sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2A-A8VL-01 10 29775061 29775061 C T SVIL Missense_Mutation p.D1578N 0.15 deleterious(0.01) benign(0.082) TCGA-2A-A8VL-01 11 105948438 105948438 A C AASDHPPT Translation_Start_Site p.M1? 0.16 tolerated_low_confidence(0.21) benign(0.267) TCGA-2A-A8VL-01 11 18460141 18460141 C T LDHC Missense_Mutation p.T220M 0.28 deleterious(0.04) possibly_damaging(0.852) TCGA-2A-A8VL-01 11 55606971 55606971 T A OR5D16 Silent p.T248T 0.15 TCGA-2A-A8VL-01 11 6541310 6541310 C T DNHD1 Missense_Mutation p.S588F 0.26 benign(0.019) TCGA-2A-A8VL-01 12 68619557 68619557 G A IL26 5'UTR 0.24 TCGA-2A-A8VL-01 14 75602590 75602590 C G TMED10 Splice_Site p.X138_splice 0.33 TCGA-2A-A8VL-01 14 96829289 96829289 T C ATG2B Missense_Mutation p.I9V 0.25 tolerated(0.42) possibly_damaging(0.456) TCGA-2A-A8VL-01 14 99876463 99876463 G A SETD3 Intron 0.35 TCGA-2A-A8VL-01 17 37074891 37074891 G A LASP1 Missense_Mutation p.A216T 0.26 deleterious(0.02) possibly_damaging(0.908) TCGA-2A-A8VL-01 17 60003895 60003895 A C INTS2 Silent p.L45L 0.29 TCGA-2A-A8VL-01 17 7012080 7012080 G A ASGR2 Silent p.H84H 0.34 TCGA-2A-A8VL-01 1 12170181 12170181 G A TNFRSF8 Missense_Mutation p.R199H 0.33 tolerated(0.2) benign(0.004) TCGA-2A-A8VL-01 1 151735452 151735452 G T OAZ3 5'UTR 0.30 TCGA-2A-A8VL-01 1 160456486 160456486 C T SLAMF6 3'UTR 0.19 TCGA-2A-A8VL-01 1 237947732 237947732 G A RYR2 Silent p.T4240T 0.22 TCGA-2A-A8VL-01 1 24397629 24397629 T C MYOM3 Missense_Mutation p.N1043S 0.08 deleterious(0) benign(0.063) TCGA-2A-A8VL-01 1 37315953 37315953 C T GRIK3 Missense_Mutation p.D429N 0.31 tolerated(0.16) benign(0.077) TCGA-2A-A8VL-01 1 99380467 99380467 C T LPPR5 Missense_Mutation p.V270M 0.16 deleterious(0) probably_damaging(0.948) TCGA-2A-A8VL-01 20 33324502 33324502 G A NCOA6 Missense_Mutation p.A1985V 0.07 benign(0.004) TCGA-2A-A8VL-01 20 33440316 33440316 C A GGT7 Missense_Mutation p.G449C 0.15 deleterious(0.01) possibly_damaging(0.905) TCGA-2A-A8VL-01 2 30480447 30480447 A G LBH Missense_Mutation p.D93G 0.34 tolerated(0.15) benign(0.003) TCGA-2A-A8VL-01 3 138739004 138739004 C T PRR23B Missense_Mutation p.R167Q 0.15 tolerated(0.27) benign(0.013) TCGA-2A-A8VL-01 3 9990882 9990882 C T PRRT3 Silent p.P306P 0.20 TCGA-2A-A8VL-01 4 6087153 6087153 G A JAKMIP1 Silent p.G276G 0.24 TCGA-2A-A8VL-01 5 41160290 41160290 G T C6 Silent p.G546G 0.25 TCGA-2A-A8VL-01 6 135515025 135515025 A T MYB Missense_Mutation p.N271I 0.27 tolerated(0.06) possibly_damaging(0.646) TCGA-2A-A8VL-01 6 26217630 26217630 G A HIST1H2AE 3'UTR 0.47 TCGA-2A-A8VL-01 6 41738928 41738928 C T FRS3 Missense_Mutation p.S303N 0.26 tolerated(0.14) possibly_damaging(0.448) TCGA-2A-A8VL-01 6 69703688 69703688 G A BAI3 Missense_Mutation p.R588Q 0.16 deleterious(0) possibly_damaging(0.752) TCGA-2A-A8VL-01 7 146829588 146829588 C T CNTNAP2 Silent p.I445I 0.23 TCGA-2A-A8VL-01 8 32621514 32621514 C T NRG1 Missense_Mutation p.A511V 0.29 tolerated(0.25) benign(0.012) TCGA-2A-A8VL-01 8 39495171 39495171 G A ADAM18 Nonsense_Mutation p.W259* 0.20 TCGA-2A-A8VL-01 8 41519413 41519413 G A ANK1 Missense_Mutation p.A1883V 0.06 deleterious_low_confidence(0.02) benign(0.085) TCGA-2A-A8VL-01 9 136310918 136310918 G A ADAMTS13 Silent p.S903S 0.12 TCGA-2A-A8VL-01 X 54783701 54783701 G T ITIH6 Missense_Mutation p.P936T 0.42 deleterious(0.01) possibly_damaging(0.755) TCGA-2A-A8VO-01 10 1044996 1044996 G A GTPBP4 Silent p.L205L 0.30 TCGA-2A-A8VO-01 10 128114440 128114440 G A C10orf90 Missense_Mutation p.A698V 0.07 deleterious(0.01) possibly_damaging(0.79) TCGA-2A-A8VO-01 10 61830119 61830119 C T ANK3 Missense_Mutation p.G3507D 0.17 probably_damaging(0.998) TCGA-2A-A8VO-01 11 113270738 113270738 G T ANKK1 Missense_Mutation p.A683S 0.14 deleterious(0) probably_damaging(0.97) TCGA-2A-A8VO-01 11 66359398 66359398 C G CCDC87 Missense_Mutation p.K363N 0.16 tolerated(1) benign(0) TCGA-2A-A8VO-01 11 6662544 6662544 C T DCHS1 Missense_Mutation p.V101I 0.15 tolerated(1) benign(0.023) TCGA-2A-A8VO-01 12 114296676 114296676 G A RBM19 Missense_Mutation p.R862C 0.19 deleterious(0) probably_damaging(1) TCGA-2A-A8VO-01 12 130830351 130830351 C T PIWIL1 Missense_Mutation p.R82C 0.22 deleterious(0.04) probably_damaging(0.97) TCGA-2A-A8VO-01 12 13717134 13717134 G A GRIN2B Missense_Mutation p.T1013I 0.30 deleterious(0.01) benign(0.238) TCGA-2A-A8VO-01 12 50357351 50357360 TCGCCTCCAC - AQP5 Frame_Shift_Del p.F147Lfs*35 0.20 TCGA-2A-A8VO-01 12 56481841 56481841 C T ERBB3 Missense_Mutation p.P257S 0.39 tolerated(0.34) benign(0.01) TCGA-2A-A8VO-01 12 56482346 56482346 A T ERBB3 Missense_Mutation p.Q298H 0.11 tolerated(1) benign(0.026) TCGA-2A-A8VO-01 15 43696671 43696671 A G TUBGCP4 Missense_Mutation p.I637V 0.05 tolerated(0.15) benign(0.113) TCGA-2A-A8VO-01 17 37186446 37186446 G T CTD-2206N4.2 5'Flank 0.04 TCGA-2A-A8VO-01 17 39724878 39724878 T C KRT9 Missense_Mutation p.Q351R 0.26 deleterious(0.01) benign(0.223) TCGA-2A-A8VO-01 19 43429943 43429943 C A PSG7 Missense_Mutation p.V409L 0.27 tolerated(0.39) benign(0.004) TCGA-2A-A8VO-01 19 44891645 44891645 G A ZNF285 Silent p.H254H 0.07 TCGA-2A-A8VO-01 1 153790536 153790536 G A GATAD2B Nonsense_Mutation p.Q237* 0.23 TCGA-2A-A8VO-01 1 156714094 156714094 T C HDGF Missense_Mutation p.E133G 0.06 tolerated(0.05) benign(0.367) TCGA-2A-A8VO-01 1 16952962 16952962 G A CROCCP2 3'Flank 0.10 TCGA-2A-A8VO-01 1 190067681 190067681 C T BRINP3 Missense_Mutation p.E590K 0.23 deleterious(0.01) benign(0.192) TCGA-2A-A8VO-01 1 43779588 43779588 C T TIE1 Silent p.I786I 0.27 TCGA-2A-A8VO-01 1 44446882 44446882 T A B4GALT2 Missense_Mutation p.L46H 0.28 deleterious(0) possibly_damaging(0.87) TCGA-2A-A8VO-01 21 32589885 32589885 C T TIAM1 Missense_Mutation p.R709Q 0.13 deleterious(0.01) possibly_damaging(0.82) TCGA-2A-A8VO-01 2 220428291 220428291 G - OBSL1 Frame_Shift_Del p.E823Sfs*96 0.09 TCGA-2A-A8VO-01 3 120998787 120998787 C A STXBP5L Missense_Mutation p.N698K 0.19 tolerated(0.4) benign(0.003) TCGA-2A-A8VO-01 3 151075043 151075043 A C MED12L Missense_Mutation p.K867Q 0.16 deleterious(0.02) probably_damaging(0.959) TCGA-2A-A8VO-01 3 189586471 189586471 G A TP63 Silent p.S365S 0.14 TCGA-2A-A8VO-01 3 49042345 49042345 G A P4HTM Silent p.P313P 0.12 TCGA-2A-A8VO-01 4 124323758 124323758 G T SPRY1 3'UTR 0.24 TCGA-2A-A8VO-01 4 17910904 17910905 TA - LCORL Frame_Shift_Del p.I165Tfs*6 0.21 TCGA-2A-A8VO-01 4 186111652 186111652 C T KIAA1430 Silent p.Q233Q 0.09 TCGA-2A-A8VO-01 4 56886920 56886920 G A CEP135 Silent p.R1098R 0.10 TCGA-2A-A8VO-01 5 26906108 26906108 C T CDH9 Silent p.T257T 0.10 TCGA-2A-A8VO-01 6 26468791 26468791 G T BTN2A1 3'UTR 0.11 TCGA-2A-A8VO-01 7 139572059 139572059 C A TBXAS1 Missense_Mutation p.L40M 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-2A-A8VO-01 7 21840819 21840819 G A DNAH11 Missense_Mutation p.R3371Q 0.27 benign(0.022) TCGA-2A-A8VO-01 7 99016989 99016989 G A PTCD1 3'Flank 0.14 TCGA-2A-A8VO-01 X 130419246 130419246 C A IGSF1 Nonsense_Mutation p.E192* 0.42 TCGA-2A-A8VO-01 X 47836948 47836948 C T ZNF182 Missense_Mutation p.E180K 0.48 tolerated(0.56) benign(0.064) TCGA-2A-A8VT-01 10 32101744 32101744 T A ARHGAP12 Missense_Mutation p.K614N 0.19 deleterious(0.03) benign(0.258) TCGA-2A-A8VT-01 10 50531758 50531758 G T C10orf71 Missense_Mutation p.G390W 0.23 deleterious(0) probably_damaging(0.995) TCGA-2A-A8VT-01 10 98386517 98386517 G A PIK3AP1 Silent p.T539T 0.09 TCGA-2A-A8VT-01 11 19252363 19252363 T C E2F8 Missense_Mutation p.H362R 0.24 tolerated(0.44) benign(0.003) TCGA-2A-A8VT-01 11 31815069 31815069 G A PAX6 Nonsense_Mutation p.R331* 0.25 TCGA-2A-A8VT-01 11 49974310 49974310 A C OR4C13 Silent p.L112L 0.06 TCGA-2A-A8VT-01 11 61110228 61110228 C A DAK Silent p.G259G 0.36 TCGA-2A-A8VT-01 11 62284330 62284330 C A AHNAK Silent p.V5853V 0.33 TCGA-2A-A8VT-01 12 133353579 133353579 C A GOLGA3 Nonsense_Mutation p.E1274* 0.52 TCGA-2A-A8VT-01 12 54675192 54675192 T C HNRNPA1 Missense_Mutation p.L13P 0.40 deleterious(0.03) probably_damaging(0.992) TCGA-2A-A8VT-01 14 23887205 23887205 G A MYH7 Intron 0.36 TCGA-2A-A8VT-01 15 60641330 60641330 T A ANXA2 Nonsense_Mutation p.K320* 0.09 TCGA-2A-A8VT-01 16 15833981 15833981 G A MYH11 Missense_Mutation p.T982M 0.34 possibly_damaging(0.694) TCGA-2A-A8VT-01 16 53190610 53190610 T A CHD9 Silent p.S203S 0.33 TCGA-2A-A8VT-01 17 7579592 7579592 T C TP53 Splice_Site p.X33_splice 0.50 TCGA-2A-A8VT-01 18 77624159 77624159 C T KCNG2 Silent p.R164R 0.56 TCGA-2A-A8VT-01 19 15839766 15839766 A G OR10H2 Missense_Mutation p.T305A 0.11 tolerated(0.39) benign(0.005) TCGA-2A-A8VT-01 19 36641901 36641901 A T COX7A1 Missense_Mutation p.S75T 0.06 deleterious(0.03) possibly_damaging(0.833) TCGA-2A-A8VT-01 19 38933032 38933032 A T RYR1 Missense_Mutation p.Q70L 0.29 benign(0.309) TCGA-2A-A8VT-01 19 47278981 47278981 T A SLC1A5 Missense_Mutation p.N471I 0.25 deleterious(0) probably_damaging(1) TCGA-2A-A8VT-01 19 49248542 49248542 T A IZUMO1 Missense_Mutation p.E80V 0.11 deleterious(0) probably_damaging(0.989) TCGA-2A-A8VT-01 1 110280790 110280790 T A GSTM3 Missense_Mutation p.I99F 0.07 deleterious(0.01) possibly_damaging(0.785) TCGA-2A-A8VT-01 1 160793350 160793350 A T LY9 Missense_Mutation p.T532S 0.12 tolerated(0.32) benign(0.021) TCGA-2A-A8VT-01 1 215963501 215963501 G T USH2A Missense_Mutation p.T3361N 0.08 possibly_damaging(0.694) TCGA-2A-A8VT-01 1 242253019 242253019 T A PLD5 3'UTR 0.42 TCGA-2A-A8VT-01 20 17581394 17581394 G T DSTN Silent p.V5V 0.11 TCGA-2A-A8VT-01 20 44756996 44756996 A T CD40 Missense_Mutation p.K225M 0.33 deleterious(0.01) possibly_damaging(0.789) TCGA-2A-A8VT-01 2 141598583 141598583 G A LRP1B Missense_Mutation p.T1673M 0.27 possibly_damaging(0.791) TCGA-2A-A8VT-01 2 176965490 176965490 C T HOXD12 3'UTR 0.19 TCGA-2A-A8VT-01 2 233244506 233244506 G A ALPP Missense_Mutation p.V173M 0.34 deleterious(0) probably_damaging(1) TCGA-2A-A8VT-01 2 67631095 67631095 G A ETAA1 Silent p.T427T 0.05 TCGA-2A-A8VT-01 2 71043280 71043280 G T CLEC4F Missense_Mutation p.D411E 0.07 tolerated(1) benign(0.001) TCGA-2A-A8VT-01 2 80530341 80530341 G A LRRTM1 Missense_Mutation p.R202C 0.16 deleterious(0) probably_damaging(0.998) TCGA-2A-A8VT-01 3 148765942 148765942 T C HLTF Missense_Mutation p.I589V 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-2A-A8VT-01 3 190986135 190986135 T A UTS2B 3'UTR 0.30 TCGA-2A-A8VT-01 3 190986146 190986146 G T UTS2B 3'UTR 0.23 TCGA-2A-A8VT-01 3 58552309 58552309 C T FAM107A 3'UTR 0.10 TCGA-2A-A8VT-01 4 126372551 126372551 A G FAT4 Silent p.G3460G 0.23 TCGA-2A-A8VT-01 4 126400959 126400959 T C FAT4 Silent p.D4179D 0.17 TCGA-2A-A8VT-01 5 102890441 102890441 C G NUDT12 Missense_Mutation p.G360R 0.09 deleterious(0) possibly_damaging(0.873) TCGA-2A-A8VT-01 5 39331784 39331784 G C C9 Missense_Mutation p.I203M 0.49 tolerated(0.24) benign(0.011) TCGA-2A-A8VT-01 6 149699821 149699821 C T TAB2 Missense_Mutation p.T257I 0.39 tolerated(0.1) benign(0.439) TCGA-2A-A8VT-01 6 99823923 99823923 T C COQ3 Missense_Mutation p.I208V 0.05 tolerated(0.06) benign(0.155) TCGA-2A-A8VT-01 7 20180754 20180754 G C MACC1 Missense_Mutation p.L792V 0.13 deleterious(0) probably_damaging(0.996) TCGA-2A-A8VT-01 8 80549132 80549132 G T STMN2 Missense_Mutation p.D39Y 0.30 deleterious(0.01) possibly_damaging(0.891) TCGA-2A-A8VT-01 8 95416434 95416434 T C RAD54B Missense_Mutation p.H272R 0.19 deleterious(0.04) possibly_damaging(0.707) TCGA-2A-A8VT-01 9 101608264 101608264 C T GALNT12 Silent p.F488F 0.48 TCGA-2A-A8VT-01 9 116136378 116136378 G A HDHD3 Missense_Mutation p.A86V 0.30 deleterious(0.01) possibly_damaging(0.782) TCGA-2A-A8VT-01 9 12695765 12695765 T G TYRP1 Missense_Mutation p.D212E 0.39 deleterious(0) probably_damaging(1) TCGA-2A-A8VT-01 9 34648844 34648844 G A GALT Missense_Mutation p.R258H 0.29 deleterious(0) probably_damaging(0.973) TCGA-2A-A8VT-01 9 43627521 43627521 G A SPATA31A6 Missense_Mutation p.S389L 0.15 tolerated(0.39) benign(0.003) TCGA-2A-A8VT-01 9 88651374 88651374 G T GOLM1 Missense_Mutation p.P216T 0.24 tolerated(0.16) probably_damaging(0.958) TCGA-2A-A8VT-01 X 131762490 131762490 G A HS6ST2 Nonsense_Mutation p.Q567* 0.28 TCGA-2A-A8VT-01 X 41604828 41604828 T C CASK Missense_Mutation p.E102G 0.36 deleterious(0) probably_damaging(1) TCGA-2A-A8VT-01 X 48970825 48970825 C T GPKOW Missense_Mutation p.R421H 0.29 tolerated(0.53) benign(0.009) TCGA-2A-A8VV-01 10 46322027 46322027 G A AGAP4 Missense_Mutation p.A443V 0.23 deleterious(0.05) probably_damaging(0.987) TCGA-2A-A8VV-01 10 73537504 73537504 A G C10orf54 5'Flank 0.10 TCGA-2A-A8VV-01 11 124135393 124135393 G C OR8G5 Missense_Mutation p.C224S 0.13 deleterious(0.02) probably_damaging(1) TCGA-2A-A8VV-01 11 22382484 22382484 G A SLC17A6 Nonsense_Mutation p.W205* 0.08 TCGA-2A-A8VV-01 11 55861503 55861503 C T OR8I2 Silent p.C240C 0.48 TCGA-2A-A8VV-01 11 5968953 5968953 G A OR56A3 Missense_Mutation p.R126H 0.05 deleterious(0.02) benign(0.082) TCGA-2A-A8VV-01 11 76873971 76873971 A T MYO7A Missense_Mutation p.N543Y 0.05 deleterious(0) possibly_damaging(0.691) TCGA-2A-A8VV-01 13 103514990 103514990 A T BIVM-ERCC5 Missense_Mutation p.R923S 0.16 tolerated_low_confidence(0.53) benign(0.003) TCGA-2A-A8VV-01 13 113223466 113223466 G A TUBGCP3 Missense_Mutation p.L62F 0.23 tolerated(0.11) benign(0.107) TCGA-2A-A8VV-01 15 23889170 23889170 G A MAGEL2 Silent p.H637H 0.11 TCGA-2A-A8VV-01 15 25479281 25479281 T C SNORD115-33 3'Flank 0.07 TCGA-2A-A8VV-01 15 49059645 49059645 A C CEP152 Nonsense_Mutation p.Y678* 0.38 TCGA-2A-A8VV-01 17 40149135 40149135 G A DNAJC7 Missense_Mutation p.R97W 0.07 deleterious(0) benign(0.368) TCGA-2A-A8VV-01 19 37440962 37440962 G C ZNF568 Missense_Mutation p.E303Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-2A-A8VV-01 1 154305093 154305093 G A ATP8B2 Splice_Site p.X203_splice 0.30 TCGA-2A-A8VV-01 1 213303168 213303168 C A RPS6KC1 Missense_Mutation p.D257E 0.06 tolerated(1) benign(0.058) TCGA-2A-A8VV-01 1 247752563 247752563 A T OR2G2 Missense_Mutation p.K301I 0.05 deleterious(0) unknown(0) TCGA-2A-A8VV-01 1 59042487 59042487 G T TACSTD2 Missense_Mutation p.F114L 0.69 deleterious(0.03) possibly_damaging(0.84) TCGA-2A-A8VV-01 1 86590761 86590761 C T COL24A1 Missense_Mutation p.E420K 0.06 tolerated(0.3) benign(0.136) TCGA-2A-A8VV-01 2 219892592 219892592 G A CCDC108 Missense_Mutation p.P664L 0.40 tolerated(0.28) benign(0.086) TCGA-2A-A8VV-01 3 119530389 119530389 T C NR1I2 Missense_Mutation p.I151T 0.31 deleterious(0.01) benign(0.293) TCGA-2A-A8VV-01 4 10445820 10445820 G A ZNF518B Silent p.N711N 0.35 TCGA-2A-A8VV-01 5 180166466 180166466 A T OR2Y1 Missense_Mutation p.M198K 0.07 deleterious(0) possibly_damaging(0.653) TCGA-2A-A8VV-01 6 152652957 152652957 C T SYNE1 Missense_Mutation p.R4288K 0.28 benign(0.004) TCGA-2A-A8VV-01 6 160482642 160482642 G A IGF2R Missense_Mutation p.V1124I 0.08 deleterious(0.03) probably_damaging(0.99) TCGA-2A-A8VV-01 7 100682353 100682353 C A MUC17 Silent p.I2552I 0.26 TCGA-2A-A8VV-01 7 126698170 126698170 G A GRM8 Intron 0.10 TCGA-2A-A8VV-01 7 92731791 92731791 G T SAMD9 Missense_Mutation p.T1207K 0.04 deleterious(0.03) benign(0.394) TCGA-2A-A8VV-01 8 110452985 110452985 A C PKHD1L1 Missense_Mutation p.M1335L 0.12 tolerated(0.36) benign(0.001) TCGA-2A-A8VV-01 9 27206740 27206740 G A TEK Missense_Mutation p.R842H 0.13 deleterious(0.02) probably_damaging(0.993) TCGA-2A-A8VV-01 9 8389278 8389278 C T PTPRD Missense_Mutation p.R1447Q 0.39 deleterious(0) benign(0.031) TCGA-2A-A8VX-01 10 92660494 92660496 ACA - RPP30 Intron 0.22 TCGA-2A-A8VX-01 12 101773277 101773277 A G UTP20 Missense_Mutation p.K2509E 0.37 tolerated(0.52) benign(0.002) TCGA-2A-A8VX-01 12 112528660 112528660 C T NAA25 Silent p.K51K 0.40 TCGA-2A-A8VX-01 12 46287432 46287435 TAAC - ARID2 Frame_Shift_Del p.T1765Nfs*5 0.46 TCGA-2A-A8VX-01 14 38061223 38061228 TCTCGA - FOXA1 In_Frame_Del p.F254_N256delinsY 0.57 TCGA-2A-A8VX-01 14 93693430 93693430 A G UBR7 3'UTR 0.57 TCGA-2A-A8VX-01 15 43622404 43622404 A C LCMT2 Missense_Mutation p.L95R 0.35 deleterious(0) probably_damaging(0.925) TCGA-2A-A8VX-01 16 2014492 2014492 G A RPS2 Silent p.G45G 0.63 TCGA-2A-A8VX-01 16 71411574 71411574 C T CALB2 Missense_Mutation p.A89V 0.13 tolerated(0.07) benign(0.057) TCGA-2A-A8VX-01 16 72831173 72831189 GGGATGTAGAAAGGGAA - ZFHX3 Frame_Shift_Del p.F1798Qfs*3 0.38 TCGA-2A-A8VX-01 17 18661648 18661648 C T FBXW10 Silent p.S421S 0.23 TCGA-2A-A8VX-01 17 40723602 40723602 T G MLX Missense_Mutation p.L293W 0.12 deleterious(0) probably_damaging(0.992) TCGA-2A-A8VX-01 18 34081915 34081915 G A FHOD3 Missense_Mutation p.G120R 0.40 deleterious(0) probably_damaging(0.999) TCGA-2A-A8VX-01 18 61585257 61585257 A G SERPINB10 Missense_Mutation p.E98G 0.33 deleterious(0.04) possibly_damaging(0.624) TCGA-2A-A8VX-01 1 110924399 110924399 A C SLC16A4 Missense_Mutation p.I80S 0.43 tolerated(0.13) benign(0.016) TCGA-2A-A8VX-01 1 157666001 157666001 A G FCRL3 Missense_Mutation p.S321P 0.36 deleterious(0) probably_damaging(1) TCGA-2A-A8VX-01 1 183486931 183486931 G C SMG7 Missense_Mutation p.E96D 0.39 tolerated(0.1) benign(0.182) TCGA-2A-A8VX-01 1 24201287 24201287 C G CNR2 Missense_Mutation p.S274T 0.44 tolerated(0.33) benign(0.044) TCGA-2A-A8VX-01 1 27087548 27087548 C T ARID1A Nonsense_Mutation p.Q708* 0.10 TCGA-2A-A8VX-01 20 1895812 1895812 G T SIRPA Missense_Mutation p.E49D 0.41 tolerated(0.14) benign(0.002) TCGA-2A-A8VX-01 20 30409489 30409489 G A MYLK2 Missense_Mutation p.G241R 0.40 deleterious(0.02) possibly_damaging(0.71) TCGA-2A-A8VX-01 2 130948170 130948170 G C MZT2B Missense_Mutation p.G150R 0.78 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-2A-A8VX-01 2 153551121 153551121 A T PRPF40A Missense_Mutation p.S78T 0.22 tolerated(0.7) possibly_damaging(0.481) TCGA-2A-A8VX-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.48 deleterious(0) probably_damaging(0.96) TCGA-2A-A8VX-01 2 208631658 208631659 CG - FZD5 3'UTR 0.38 TCGA-2A-A8VX-01 2 21234067 21234067 A G APOB Silent p.H1891H 0.05 TCGA-2A-A8VX-01 3 167170724 167170724 C A SERPINI2 Missense_Mutation p.D322Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-2A-A8VX-01 3 30885877 30885877 A G GADL1 Splice_Site p.X244_splice 0.43 TCGA-2A-A8VX-01 3 46399066 46399066 C A CCR2 Missense_Mutation p.S16R 0.41 tolerated(0.23) benign(0.118) TCGA-2A-A8VX-01 4 65175614 65175614 C A TECRL Missense_Mutation p.R196L 0.07 deleterious(0) probably_damaging(0.999) TCGA-2A-A8VX-01 5 140865402 140865402 C T PCDHGC4 Missense_Mutation p.P221L 0.35 tolerated(0.26) benign(0.183) TCGA-2A-A8VX-01 5 21752061 21752061 T C CDH12 Missense_Mutation p.N724D 0.43 tolerated(0.06) benign(0.215) TCGA-2A-A8VX-01 5 33944917 33944917 C T SLC45A2 Missense_Mutation p.A477T 0.48 deleterious(0) probably_damaging(0.999) TCGA-2A-A8VX-01 6 159457441 159457441 G A TAGAP Silent p.H538H 0.07 TCGA-2A-A8VX-01 7 107314687 107314687 G A SLC26A4 Missense_Mutation p.S165N 0.55 tolerated(0.35) benign(0.004) TCGA-2A-A8VX-01 8 104413832 104413832 T C SLC25A32 Missense_Mutation p.T242A 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-2A-A8VX-01 9 2115841 2115841 G A SMARCA2 Missense_Mutation p.R1159Q 0.41 possibly_damaging(0.553) TCGA-2A-A8W1-01 10 24880205 24880205 G T ARHGAP21 Missense_Mutation p.H1367N 0.33 deleterious(0) probably_damaging(0.994) TCGA-2A-A8W1-01 12 119968725 119968725 C T CCDC60 Missense_Mutation p.R470C 0.05 deleterious(0) probably_damaging(0.983) TCGA-2A-A8W1-01 12 122685876 122685876 G C LRRC43 Missense_Mutation p.E615Q 0.38 tolerated(0.24) benign(0.117) TCGA-2A-A8W1-01 13 42273390 42273390 A C VWA8 Silent p.T1127T 0.45 TCGA-2A-A8W1-01 16 54319405 54319405 G A IRX3 Missense_Mutation p.R130C 0.10 deleterious(0) probably_damaging(0.998) TCGA-2A-A8W1-01 16 57290877 57290877 C T PLLP Missense_Mutation p.R166Q 0.09 tolerated(0.07) benign(0.419) TCGA-2A-A8W1-01 18 2656103 2656103 G C SMCHD1 Missense_Mutation p.G10A 0.38 tolerated_low_confidence(0.32) unknown(0) TCGA-2A-A8W1-01 19 9868382 9868382 T A ZNF846 Missense_Mutation p.K457N 0.06 deleterious(0) probably_damaging(1) TCGA-2A-A8W1-01 19 9868402 9868402 C G ZNF846 Missense_Mutation p.E451Q 0.09 deleterious(0.04) benign(0.389) TCGA-2A-A8W1-01 1 144220806 144220806 G T NBPF8 Missense_Mutation p.D3576Y 0.09 possibly_damaging(0.852) TCGA-2A-A8W1-01 1 159505586 159505586 G A OR10J5 Missense_Mutation p.T71M 0.50 deleterious(0.04) possibly_damaging(0.908) TCGA-2A-A8W1-01 1 185880806 185880806 G A HMCN1 Missense_Mutation p.G265E 0.39 probably_damaging(0.994) TCGA-2A-A8W1-01 1 222833531 222833531 A G MIA3 Missense_Mutation p.Q1663R 0.53 tolerated(0.6) possibly_damaging(0.907) TCGA-2A-A8W1-01 20 61929342 61929342 G A COL20A1 Missense_Mutation p.G55S 0.45 deleterious(0.03) probably_damaging(1) TCGA-2A-A8W1-01 2 141945999 141945999 G C LRP1B Missense_Mutation p.P335R 0.25 probably_damaging(0.942) TCGA-2A-A8W1-01 2 163070543 163070543 G C FAP Missense_Mutation p.R303G 0.18 deleterious(0) probably_damaging(1) TCGA-2A-A8W1-01 2 29259409 29259409 C G FAM179A Silent p.V807V 0.37 TCGA-2A-A8W1-01 3 124854566 124854566 C T SLC12A8 Missense_Mutation p.S228N 0.12 tolerated(0.07) benign(0.062) TCGA-2A-A8W1-01 3 134670794 134670794 C T EPHB1 Silent p.P235P 0.43 TCGA-2A-A8W1-01 3 38601865 38601865 C T SCN5A Missense_Mutation p.V1340I 0.44 deleterious(0) probably_damaging(0.996) TCGA-2A-A8W1-01 3 52014456 52014456 C T ABHD14A Missense_Mutation p.R149W 0.68 deleterious(0) probably_damaging(0.998) TCGA-2A-A8W1-01 4 81967606 81967606 G A BMP3 Missense_Mutation p.R344Q 0.54 tolerated(1) benign(0) TCGA-2A-A8W1-01 5 52781604 52781604 T A FST Intron 0.06 TCGA-2A-A8W1-01 6 152754966 152754966 C T SYNE1 Silent p.S1475S 0.06 TCGA-2A-A8W1-01 7 95222106 95222106 G C PDK4 Missense_Mutation p.N165K 0.05 deleterious(0) probably_damaging(0.992) TCGA-2A-A8W1-01 8 71646088 71646088 T C XKR9 Missense_Mutation p.V184A 0.19 deleterious(0.03) benign(0.217) TCGA-2A-A8W1-01 8 9564481 9564481 C T TNKS Missense_Mutation p.T477I 0.24 deleterious(0.03) possibly_damaging(0.636) TCGA-2A-A8W1-01 9 131222909 131222909 A - ODF2 Intron 0.33 TCGA-2A-A8W1-01 9 140074781 140074781 C T ANAPC2 Missense_Mutation p.R581Q 0.09 tolerated(0.46) benign(0.096) TCGA-2A-A8W3-01 10 103588846 103588846 G A KCNIP2 Missense_Mutation p.R127W 0.32 deleterious(0) possibly_damaging(0.88) TCGA-2A-A8W3-01 10 123844843 123844843 C T TACC2 Missense_Mutation p.A943V 0.24 benign(0.003) TCGA-2A-A8W3-01 10 95399905 95399905 T C PDE6C Silent p.L521L 0.27 TCGA-2A-A8W3-01 11 18738274 18738274 C T IGSF22 Splice_Site p.X416_splice 0.25 TCGA-2A-A8W3-01 11 73022674 73022674 G A ARHGEF17 Silent p.T997T 0.18 TCGA-2A-A8W3-01 11 82560220 82560220 G A PRCP Silent p.C285C 0.08 TCGA-2A-A8W3-01 12 6575351 6575351 C T VAMP1 Intron 0.28 TCGA-2A-A8W3-01 12 93100898 93100898 G A C12orf74 Missense_Mutation p.R164Q 0.23 tolerated(0.54) benign(0.005) TCGA-2A-A8W3-01 12 994555 994555 C G WNK1 Missense_Mutation p.L1529V 0.28 tolerated_low_confidence(0.23) benign(0.258) TCGA-2A-A8W3-01 14 72137985 72137985 G A SIPA1L1 Missense_Mutation p.R802Q 0.19 deleterious(0.04) possibly_damaging(0.68) TCGA-2A-A8W3-01 15 28116315 28116315 C T OCA2 Silent p.P743P 0.26 TCGA-2A-A8W3-01 15 89449106 89449107 - T MFGE8 Frame_Shift_Ins p.N189Kfs*9 0.17 TCGA-2A-A8W3-01 16 27367221 27367221 A C IL4R Missense_Mutation p.I255L 0.14 deleterious(0.03) benign(0.016) TCGA-2A-A8W3-01 16 66947138 66947138 G A CDH16 Missense_Mutation p.A317V 0.05 deleterious(0.05) benign(0.4) TCGA-2A-A8W3-01 16 67290816 67290816 G A SLC9A5 Missense_Mutation p.V379I 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-2A-A8W3-01 16 70285043 70285043 A T EXOSC6 Missense_Mutation p.V254E 0.36 deleterious(0) possibly_damaging(0.683) TCGA-2A-A8W3-01 17 10600820 10600820 G A SCO1 Missense_Mutation p.A2V 0.15 deleterious_low_confidence(0.05) benign(0.014) TCGA-2A-A8W3-01 17 73177268 73177269 CA - SUMO2 Frame_Shift_Del p.N14Qfs*5 0.18 TCGA-2A-A8W3-01 17 74006445 74006445 G C EVPL Silent p.T947T 0.24 TCGA-2A-A8W3-01 17 80790121 80790121 T G ZNF750 Silent p.S70S 0.19 TCGA-2A-A8W3-01 18 5398057 5398057 A G EPB41L3 Missense_Mutation p.I812T 0.18 tolerated(0.16) benign(0.033) TCGA-2A-A8W3-01 19 50296324 50296324 C A AP2A1 Missense_Mutation p.S227Y 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-2A-A8W3-01 1 160093053 160093053 C T ATP1A2 Silent p.N76N 0.21 TCGA-2A-A8W3-01 1 38192843 38192843 A G EPHA10 Missense_Mutation p.V568A 0.11 tolerated(0.27) benign(0.034) TCGA-2A-A8W3-01 1 55075174 55075174 A G FAM151A Missense_Mutation p.S509P 0.17 deleterious(0) probably_damaging(0.999) TCGA-2A-A8W3-01 20 55100069 55100069 C T FAM209A Missense_Mutation p.P69S 0.17 deleterious(0) benign(0.136) TCGA-2A-A8W3-01 20 58348360 58348360 A T PHACTR3 Missense_Mutation p.S260C 0.26 tolerated(0.11) benign(0.371) TCGA-2A-A8W3-01 21 15326416 15326416 C A ANKRD20A11P RNA 0.19 TCGA-2A-A8W3-01 2 189909928 189909928 G A COL5A2 Nonsense_Mutation p.R1114* 0.18 TCGA-2A-A8W3-01 2 232577912 232577912 G A PTMA 3'UTR 0.29 TCGA-2A-A8W3-01 2 238283426 238283426 C T COL6A3 Missense_Mutation p.G1103E 0.29 probably_damaging(1) TCGA-2A-A8W3-01 2 62099698 62099698 T C CCT4 Missense_Mutation p.K384R 0.25 tolerated(0.37) benign(0.037) TCGA-2A-A8W3-01 2 73835695 73835696 - A ALMS1 Frame_Shift_Ins p.R4154Efs*40 0.19 TCGA-2A-A8W3-01 2 89544386 89544386 C G IGKV2-30 Missense_Mutation p.D80H 0.20 tolerated(0.54) benign(0.005) TCGA-2A-A8W3-01 3 132196704 132196704 T A DNAJC13 Missense_Mutation p.D839E 0.14 tolerated(0.1) benign(0.087) TCGA-2A-A8W3-01 3 1367541 1367541 C T CNTN6 Missense_Mutation p.S330F 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-2A-A8W3-01 3 9055452 9055452 C T SRGAP3 Missense_Mutation p.V630I 0.13 tolerated(0.16) probably_damaging(0.995) TCGA-2A-A8W3-01 4 104640398 104640398 G A TACR3 Silent p.Y145Y 0.17 TCGA-2A-A8W3-01 4 140297585 140297585 A G NAA15 Missense_Mutation p.I672V 0.21 tolerated(0.06) benign(0.116) TCGA-2A-A8W3-01 4 42576684 42576684 C T ATP8A1 Missense_Mutation p.C416Y 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-2A-A8W3-01 5 140168038 140168038 G T PCDHA1 Silent p.L721L 0.07 TCGA-2A-A8W3-01 5 140308947 140308947 G A PCDHAC1 Intron 0.20 TCGA-2A-A8W3-01 5 160047583 160047583 G A ATP10B Silent p.H729H 0.22 TCGA-2A-A8W3-01 6 13625976 13625976 T C RANBP9 Silent p.A656A 0.27 TCGA-2A-A8W3-01 6 152679519 152679519 G A SYNE1 Missense_Mutation p.R3533C 0.18 possibly_damaging(0.708) TCGA-2A-A8W3-01 6 26045770 26045770 G A HIST1H3C Silent p.P44P 0.08 TCGA-2A-A8W3-01 6 29408448 29408448 G A OR10C1 Missense_Mutation p.R219H 0.06 tolerated(0.33) benign(0.002) TCGA-2A-A8W3-01 6 6305671 6305671 G A F13A1 Missense_Mutation p.R78C 0.24 deleterious(0) probably_damaging(1) TCGA-2A-A8W3-01 7 136699850 136699850 T C CHRM2 Missense_Mutation p.Y80H 0.19 deleterious(0) probably_damaging(0.987) TCGA-2A-A8W3-01 7 72658359 72658359 G A GTF2IRD2P1 RNA 0.17 TCGA-2A-A8W3-01 9 131262596 131262596 A G ODF2 3'UTR 0.12 TCGA-2A-A8W3-01 9 86893131 86893131 C T SLC28A3 3'UTR 0.11 TCGA-2A-AAYF-01 10 69961683 69961683 C T MYPN Silent p.G1197G 0.43 TCGA-2A-AAYF-01 11 1159382 1159382 C T MUC5AC Silent p.H453H 0.38 TCGA-2A-AAYF-01 12 101757394 101757394 A G UTP20 Missense_Mutation p.K1944R 0.31 tolerated(0.07) possibly_damaging(0.831) TCGA-2A-AAYF-01 12 13065535 13065535 A C GPRC5A 3'UTR 0.43 TCGA-2A-AAYF-01 14 102551071 102551071 C G HSP90AA1 Missense_Mutation p.G432R 0.37 deleterious_low_confidence(0.02) unknown(0) TCGA-2A-AAYF-01 14 29237877 29237877 G A FOXG1 Silent p.T464T 0.44 TCGA-2A-AAYF-01 18 54339808 54339808 G T WDR7 Missense_Mutation p.C21F 0.31 deleterious(0) probably_damaging(0.999) TCGA-2A-AAYF-01 1 6206882 6206882 G T CHD5 Missense_Mutation p.T478K 0.82 tolerated(0.73) benign(0.002) TCGA-2A-AAYF-01 21 38593635 38593635 G C DSCR3 3'Flank 0.36 TCGA-2A-AAYF-01 2 165952053 165952053 T C SCN3A Missense_Mutation p.I1467V 0.37 deleterious(0.05) benign(0.026) TCGA-2A-AAYF-01 2 179580332 179580332 C T TTN Silent p.S8603S 0.37 TCGA-2A-AAYF-01 3 48679866 48679866 C T CELSR3 Missense_Mutation p.D2864N 0.25 tolerated(0.31) benign(0.121) TCGA-2A-AAYF-01 4 41621368 41621368 G A LIMCH1 Silent p.A282A 0.31 TCGA-2A-AAYF-01 5 176395642 176395642 T C UIMC1 Missense_Mutation p.K372E 0.39 tolerated(0.24) benign(0.012) TCGA-2A-AAYF-01 5 72469163 72469163 C T TMEM174 Silent p.S31S 0.42 TCGA-2A-AAYF-01 6 110426721 110426721 C T WASF1 Missense_Mutation p.R201Q 0.30 deleterious(0.01) unknown(0) TCGA-2A-AAYF-01 6 26027174 26027174 C A HIST1H4B Missense_Mutation p.G103C 0.35 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-2A-AAYF-01 7 126882812 126882812 G A GRM8 Silent p.G149G 0.34 TCGA-2A-AAYF-01 7 139790982 139790982 C T KDM7A Missense_Mutation p.R913H 0.41 deleterious(0) probably_damaging(0.999) TCGA-2A-AAYF-01 7 44146386 44146386 G A AEBP1 Silent p.P165P 0.50 TCGA-2A-AAYF-01 8 121823566 121823566 T C SNTB1 Missense_Mutation p.H173R 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-2A-AAYF-01 8 59508192 59508192 C T NSMAF Missense_Mutation p.E638K 0.30 tolerated(0.2) possibly_damaging(0.754) TCGA-2A-AAYF-01 8 67786786 67786786 C G MCMDC2 Missense_Mutation p.L84V 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-2A-AAYF-01 8 77767702 77767702 C T ZFHX4 Missense_Mutation p.P2849S 0.37 benign(0.008) TCGA-2A-AAYO-01 11 123624320 123624320 T C OR6X1 Missense_Mutation p.M303V 0.31 tolerated(0.76) benign(0.001) TCGA-2A-AAYO-01 11 76814332 76814351 GGAGCCCGCCAACCTCAAGG - OMP Frame_Shift_Del p.E150Lfs*5 0.24 TCGA-2A-AAYO-01 14 23354496 23354496 T C REM2 Missense_Mutation p.I156T 0.17 deleterious(0) possibly_damaging(0.656) TCGA-2A-AAYO-01 16 31434512 31434512 G A ITGAD Missense_Mutation p.R953H 0.33 tolerated(0.1) benign(0.04) TCGA-2A-AAYO-01 16 88691151 88691151 G T ZC3H18 Missense_Mutation p.R680S 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-2A-AAYO-01 17 10305040 10305040 T A MYH8 Missense_Mutation p.Q917H 0.04 deleterious(0.04) benign(0.01) TCGA-2A-AAYO-01 17 4643959 4643959 G A ZMYND15 Missense_Mutation p.R39H 0.48 tolerated_low_confidence(0.07) benign(0.031) TCGA-2A-AAYO-01 17 76094486 76094486 C G TNRC6C Missense_Mutation p.L1493V 0.28 deleterious(0) probably_damaging(0.992) TCGA-2A-AAYO-01 1 153661480 153661480 C T NPR1 Silent p.Y823Y 0.31 TCGA-2A-AAYO-01 1 156642952 156642952 C T NES Missense_Mutation p.R343H 0.39 tolerated(0.43) benign(0.011) TCGA-2A-AAYO-01 1 8404029 8404029 G C SLC45A1 Missense_Mutation p.D735H 0.19 deleterious(0.01) possibly_damaging(0.583) TCGA-2A-AAYO-01 20 10620426 10620426 A G JAG1 Missense_Mutation p.I1126T 0.37 deleterious(0) probably_damaging(0.994) TCGA-2A-AAYO-01 2 179425802 179425802 C T TTN Missense_Mutation p.E28353K 0.34 TCGA-2A-AAYO-01 2 63660945 63660945 G T WDPCP Silent p.A253A 0.32 TCGA-2A-AAYO-01 3 127500647 127500647 A G MGLL Missense_Mutation p.F83L 0.21 deleterious(0) possibly_damaging(0.765) TCGA-2A-AAYO-01 3 129279278 129279278 C T PLXND1 Splice_Site p.X1677_splice 0.21 TCGA-2A-AAYO-01 5 115814379 115814379 G A SEMA6A Missense_Mutation p.A429V 0.10 deleterious(0) possibly_damaging(0.735) TCGA-2A-AAYO-01 5 79366954 79366954 C T THBS4 Silent p.T557T 0.34 TCGA-2A-AAYO-01 6 152804276 152804276 G C SYNE1 Missense_Mutation p.Q432E 0.22 benign(0.219) TCGA-2A-AAYO-01 7 152549245 152549245 G A ACTR3B Missense_Mutation p.R329K 0.29 tolerated(1) benign(0.002) TCGA-2A-AAYO-01 8 55541954 55541954 C T RP1 Missense_Mutation p.R1838C 0.42 deleterious(0) possibly_damaging(0.707) TCGA-2A-AAYO-01 9 1055892 1055892 G A DMRT2 Intron 0.41 TCGA-2A-AAYO-01 9 35752003 35752004 GC - RGP1 Frame_Shift_Del p.R272Tfs*26 0.21 TCGA-2A-AAYO-01 X 128624063 128624064 - T SMARCA1 Frame_Shift_Ins p.R641Kfs*14 0.45 TCGA-2A-AAYU-01 10 25887455 25887455 C A GPR158 Missense_Mutation p.P967Q 0.35 tolerated(0.44) benign(0.093) TCGA-2A-AAYU-01 11 101765741 101765741 G A ANGPTL5 Missense_Mutation p.T239I 0.18 tolerated(0.11) benign(0.076) TCGA-2A-AAYU-01 11 7531065 7531065 G A OLFML1 Silent p.G285G 0.07 TCGA-2A-AAYU-01 12 16516847 16516847 C T MGST1 Missense_Mutation p.R114W 0.04 deleterious(0) probably_damaging(1) TCGA-2A-AAYU-01 12 53343136 53343136 C A KRT18 Missense_Mutation p.S60Y 0.40 tolerated(0.37) benign(0.181) TCGA-2A-AAYU-01 13 111130444 111130444 G A COL4A2 Silent p.L840L 0.14 TCGA-2A-AAYU-01 14 20444489 20444489 T A OR4K15 Missense_Mutation p.V271D 0.31 deleterious(0) probably_damaging(1) TCGA-2A-AAYU-01 14 86087985 86087985 G A FLRT2 Missense_Mutation p.D43N 0.14 deleterious(0) possibly_damaging(0.826) TCGA-2A-AAYU-01 14 99642399 99642399 C T BCL11B Silent p.S258S 0.13 TCGA-2A-AAYU-01 16 20975444 20975444 C T DNAH3 Silent p.L3254L 0.44 TCGA-2A-AAYU-01 16 47143592 47143592 C T NETO2 Missense_Mutation p.E229K 0.39 tolerated(0.05) benign(0.403) TCGA-2A-AAYU-01 17 33310098 33310098 G A LIG3 Missense_Mutation p.R25Q 0.30 tolerated_low_confidence(0.23) benign(0.004) TCGA-2A-AAYU-01 17 4805194 4805194 T C C17orf107 3'UTR 0.16 TCGA-2A-AAYU-01 19 829580 829580 C T AZU1 Silent p.T78T 0.13 TCGA-2A-AAYU-01 1 237972270 237972270 C T RYR2 Nonsense_Mutation p.R4790* 0.43 TCGA-2A-AAYU-01 1 53453802 53453802 G A SCP2 Missense_Mutation p.A359T 0.47 deleterious(0) probably_damaging(0.994) TCGA-2A-AAYU-01 1 89844044 89844044 C T GBP6 Missense_Mutation p.S166F 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-2A-AAYU-01 2 54114534 54114534 G C PSME4 Missense_Mutation p.P1531A 0.13 tolerated(0.9) benign(0) TCGA-2A-AAYU-01 3 124627149 124627149 C T MUC13 Missense_Mutation p.E461K 0.21 tolerated(0.21) benign(0.003) TCGA-2A-AAYU-01 4 102981512 102981512 A C BANK1 Missense_Mutation p.Q705P 0.39 deleterious(0) probably_damaging(0.994) TCGA-2A-AAYU-01 5 112878169 112878169 C T YTHDC2 Silent p.V488V 0.21 TCGA-2A-AAYU-01 5 140431407 140431407 C T PCDHB1 Missense_Mutation p.R118W 0.26 deleterious(0.01) possibly_damaging(0.704) TCGA-2A-AAYU-01 5 141335501 141335501 C T PCDH12 Missense_Mutation p.R639H 0.31 tolerated(0.22) possibly_damaging(0.602) TCGA-2A-AAYU-01 6 33287453 33287453 A - DAXX Frame_Shift_Del p.N548Kfs*8 0.20 TCGA-2A-AAYU-01 6 39507801 39507801 G A KIF6 Silent p.S541S 0.34 TCGA-2A-AAYU-01 7 142459851 142459851 G A PRSS1 Missense_Mutation p.G143S 0.16 deleterious(0) probably_damaging(0.999) TCGA-2A-AAYU-01 7 150773114 150773114 T C SLC4A2 Silent p.R1162R 0.39 TCGA-2A-AAYU-01 7 99217449 99217449 G A ZSCAN25 Missense_Mutation p.E74K 0.32 deleterious(0.03) possibly_damaging(0.766) TCGA-2A-AAYU-01 8 93017508 93017508 C G RUNX1T1 Silent p.L203L 0.16 TCGA-2A-AAYU-01 9 123779761 123779761 T C C5 Missense_Mutation p.Y582C 0.48 deleterious(0) benign(0.397) TCGA-4L-AA1F-01 10 101993058 101993058 T A CWF19L1 Nonsense_Mutation p.K515* 0.13 TCGA-4L-AA1F-01 10 101993060 101993060 C T CWF19L1 Missense_Mutation p.S514N 0.12 tolerated(0.16) benign(0.114) TCGA-4L-AA1F-01 10 26446395 26446395 C T MYO3A Nonsense_Mutation p.R984* 0.24 TCGA-4L-AA1F-01 10 5493864 5493864 A C NET1 Missense_Mutation p.R109S 0.13 deleterious(0) benign(0.354) TCGA-4L-AA1F-01 10 89720803 89720804 TA - PTEN Frame_Shift_Del p.T319Ffs*5 0.11 TCGA-4L-AA1F-01 12 121880305 121880305 T G KDM2B Missense_Mutation p.E980A 0.36 tolerated_low_confidence(0.06) possibly_damaging(0.611) TCGA-4L-AA1F-01 12 40761496 40761496 C A LRRK2 Missense_Mutation p.Q2505K 0.10 tolerated(0.63) benign(0.005) TCGA-4L-AA1F-01 12 85518199 85518199 G A LRRIQ1 Silent p.K1303K 0.07 TCGA-4L-AA1F-01 14 31066655 31066655 C T G2E3 Silent p.F186F 0.12 TCGA-4L-AA1F-01 14 92960022 92960022 C T SLC24A4 3'UTR 0.21 TCGA-4L-AA1F-01 18 29867774 29867774 G A GAREM Silent p.L262L 0.09 TCGA-4L-AA1F-01 19 10668457 10668457 C T KRI1 Missense_Mutation p.V498M 0.10 tolerated(0.07) benign(0.068) TCGA-4L-AA1F-01 19 14883284 14883284 C T EMR2 Silent p.S75S 0.15 TCGA-4L-AA1F-01 19 51362875 51362876 AG - KLK3 Intron 0.23 TCGA-4L-AA1F-01 1 118526457 118526457 T C SPAG17 Missense_Mutation p.Q1950R 0.09 tolerated(0.22) benign(0.168) TCGA-4L-AA1F-01 1 156821758 156821758 C G INSRR Missense_Mutation p.G288A 0.23 tolerated(0.53) benign(0.135) TCGA-4L-AA1F-01 1 176852023 176852023 G A ASTN1 Nonsense_Mutation p.R1112* 0.15 TCGA-4L-AA1F-01 22 39382336 39382336 A G APOBEC3B Missense_Mutation p.N163S 0.21 tolerated(0.19) benign(0.052) TCGA-4L-AA1F-01 2 158617585 158617585 C A ACVR1 Silent p.L357L 0.17 TCGA-4L-AA1F-01 2 165551251 165551251 G A COBLL1 Missense_Mutation p.A922V 0.07 tolerated(0.92) probably_damaging(0.993) TCGA-4L-AA1F-01 2 49190290 49190290 C T FSHR Missense_Mutation p.R557Q 0.13 tolerated(0.3) possibly_damaging(0.81) TCGA-4L-AA1F-01 3 38350513 38350513 G T SLC22A14 Missense_Mutation p.G282W 0.11 deleterious(0) probably_damaging(1) TCGA-4L-AA1F-01 3 66433531 66433531 T - LRIG1 Frame_Shift_Del p.D789Vfs*5 0.21 TCGA-4L-AA1F-01 4 4317416 4317416 A G ZBTB49 Missense_Mutation p.K477R 0.13 tolerated(0.1) probably_damaging(0.98) TCGA-4L-AA1F-01 5 133541656 133541656 C T PPP2CA Missense_Mutation p.G90E 0.21 deleterious(0) probably_damaging(1) TCGA-4L-AA1F-01 5 167545362 167545362 G A TENM2 Missense_Mutation p.G627S 0.26 deleterious(0) probably_damaging(1) TCGA-4L-AA1F-01 5 76028613 76028613 C T F2R Missense_Mutation p.A188V 0.08 deleterious(0) possibly_damaging(0.843) TCGA-4L-AA1F-01 6 112671564 112671564 C A RFPL4B Silent p.I218I 0.13 TCGA-4L-AA1F-01 6 150289967 150289967 C T ULBP1 Nonsense_Mutation p.Q104* 0.20 TCGA-4L-AA1F-01 7 76828504 76828504 G T FGL2 Missense_Mutation p.R203S 0.05 tolerated(0.91) benign(0.001) TCGA-4L-AA1F-01 7 92164118 92164118 G A RBM48 Missense_Mutation p.R284H 0.07 deleterious(0.03) benign(0.13) TCGA-4L-AA1F-01 8 82727590 82727590 C A SNX16 Silent p.P217P 0.15 TCGA-4L-AA1F-01 9 916850 916850 G A DMRT1 Missense_Mutation p.V304M 0.23 tolerated(0.2) benign(0.016) TCGA-4L-AA1F-01 X 125685748 125685748 A G DCAF12L1 Silent p.L282L 0.42 TCGA-4L-AA1F-01 X 52681974 52681974 C A SSX7 Nonsense_Mutation p.E44* 0.33 TCGA-CH-5737-01 10 63851205 63851205 C G ARID5B Missense_Mutation p.D661E 0.05 tolerated(1) probably_damaging(0.97) TCGA-CH-5737-01 10 74135571 74135571 C G MICU1 Missense_Mutation p.D414H 0.20 deleterious(0.01) benign(0.197) TCGA-CH-5737-01 10 89692871 89692871 G T PTEN Missense_Mutation p.V119F 0.40 deleterious(0) probably_damaging(0.997) TCGA-CH-5737-01 11 103090670 103090670 T G DYNC2H1 Silent p.L2953L 0.27 TCGA-CH-5737-01 11 108205768 108205768 G A ATM Missense_Mutation p.G2695S 0.13 deleterious(0) probably_damaging(1) TCGA-CH-5737-01 11 125525217 125525217 C - CHEK1 3'UTR 0.10 TCGA-CH-5737-01 11 32605404 32605404 T C EIF3M 5'UTR 0.26 TCGA-CH-5737-01 11 56043918 56043918 C T OR5T1 Silent p.L268L 0.33 TCGA-CH-5737-01 11 58207266 58207266 C T OR5B12 Missense_Mutation p.R120H 0.31 deleterious_low_confidence(0.03) benign(0.283) TCGA-CH-5737-01 11 61034970 61034970 C T VWCE Silent p.P643P 0.31 TCGA-CH-5737-01 11 71293806 71293806 A T KRTAP5-11 Silent p.S26S 0.14 TCGA-CH-5737-01 12 57962799 57962799 C T KIF5A Silent p.N256N 0.14 TCGA-CH-5737-01 12 66696411 66696411 C A HELB Missense_Mutation p.Q10K 0.05 deleterious(0.01) unknown(0) TCGA-CH-5737-01 14 24621084 24621085 GA - RNF31 Frame_Shift_Del p.N672Lfs*2 0.15 TCGA-CH-5737-01 14 25076555 25076555 T G GZMH Missense_Mutation p.K133Q 0.06 tolerated(0.47) benign(0.02) TCGA-CH-5737-01 14 38061220 38061225 CGTTCT - FOXA1 In_Frame_Del p.E255_N256del 0.34 TCGA-CH-5737-01 14 57268617 57268617 C G OTX2 Missense_Mutation p.A244P 0.33 tolerated(0.19) benign(0.005) TCGA-CH-5737-01 15 33990173 33990173 C T RYR3 Silent p.N2075N 0.17 TCGA-CH-5737-01 15 62978869 62978869 G T TLN2 Silent p.V329V 0.26 TCGA-CH-5737-01 16 12009738 12009738 G A GSPT1 5'UTR 0.35 TCGA-CH-5737-01 16 20370791 20370791 C T PDILT Silent p.S535S 0.03 TCGA-CH-5737-01 16 3406160 3406160 G A OR2C1 Missense_Mutation p.A74T 0.11 tolerated(1) benign(0) TCGA-CH-5737-01 16 3640681 3640681 G A SLX4 Silent p.L986L 0.04 TCGA-CH-5737-01 16 56362633 56362633 T C GNAO1 Missense_Mutation p.W132R 0.14 deleterious(0) probably_damaging(0.997) TCGA-CH-5737-01 17 37093416 37093416 C G FBXO47 3'UTR 0.37 TCGA-CH-5737-01 17 46262165 46262165 G A SKAP1 Missense_Mutation p.R163W 0.16 deleterious(0) probably_damaging(0.976) TCGA-CH-5737-01 17 54969322 54969322 G A TRIM25 Silent p.R544R 0.28 TCGA-CH-5737-01 17 79496338 79496338 G T FSCN2 Missense_Mutation p.V261L 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-CH-5737-01 18 14479261 14479261 C T CXADRP3 RNA 0.19 TCGA-CH-5737-01 19 22585674 22585674 G T ZNF98 Missense_Mutation p.S57Y 0.19 deleterious(0) probably_damaging(0.962) TCGA-CH-5737-01 19 22836734 22836734 C A ZNF492 Missense_Mutation p.S16Y 0.09 deleterious(0) possibly_damaging(0.831) TCGA-CH-5737-01 19 3641788 3641788 C T PIP5K1C Missense_Mutation p.A568T 0.36 tolerated_low_confidence(0.31) benign(0.029) TCGA-CH-5737-01 19 39959750 39959750 A G SUPT5H Missense_Mutation p.E392G 0.13 deleterious(0) probably_damaging(0.992) TCGA-CH-5737-01 19 43259290 43259290 G T PSG8 Missense_Mutation p.L280I 0.13 tolerated(0.14) probably_damaging(0.992) TCGA-CH-5737-01 1 158576525 158576525 C T OR10Z1 Silent p.A99A 0.22 TCGA-CH-5737-01 1 16257094 16257094 C T SPEN Silent p.S1453S 0.30 TCGA-CH-5737-01 1 35855556 35855556 A G ZMYM4 Missense_Mutation p.K815R 0.20 tolerated(0.06) benign(0.035) TCGA-CH-5737-01 1 91989955 91989955 C A CDC7 Missense_Mutation p.A563D 0.05 deleterious(0) probably_damaging(1) TCGA-CH-5737-01 20 3251194 3251194 C T C20orf194 Missense_Mutation p.V889M 0.10 deleterious(0) possibly_damaging(0.872) TCGA-CH-5737-01 20 42831694 42831697 ACAG - OSER1 Frame_Shift_Del p.S32Lfs*42 0.38 TCGA-CH-5737-01 20 47845307 47845307 C T DDX27 Silent p.R285R 0.31 TCGA-CH-5737-01 20 49620929 49620929 C T KCNG1 Missense_Mutation p.V397I 0.05 deleterious(0.02) possibly_damaging(0.535) TCGA-CH-5737-01 20 56099193 56099193 C T CTCFL Silent p.P23P 0.33 TCGA-CH-5737-01 21 38884778 38884778 G C DYRK1A Missense_Mutation p.E746Q 0.03 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-CH-5737-01 2 113089935 113089935 A G ZC3H6 Missense_Mutation p.D1147G 0.04 deleterious(0.01) possibly_damaging(0.772) TCGA-CH-5737-01 2 127453705 127453705 A T GYPC Missense_Mutation p.E125V 0.15 deleterious(0) probably_damaging(0.998) TCGA-CH-5737-01 2 177034058 177034058 C T HOXD3 Silent p.S72S 0.27 TCGA-CH-5737-01 2 241418964 241418964 G A ANKMY1 3'UTR 0.22 TCGA-CH-5737-01 2 79255008 79255008 C G REG3G Missense_Mutation p.P137A 0.26 tolerated(0.12) possibly_damaging(0.815) TCGA-CH-5737-01 3 73437147 73437148 - A PDZRN3 Frame_Shift_Ins p.S497Ffs*8 0.32 TCGA-CH-5737-01 5 121786251 121786251 G T SNCAIP Missense_Mutation p.R570I 0.03 deleterious(0.05) benign(0.197) TCGA-CH-5737-01 5 140476346 140476346 G A PCDHB2 Missense_Mutation p.A658T 0.23 deleterious_low_confidence(0.01) benign(0.015) TCGA-CH-5737-01 5 148407223 148407223 G A SH3TC2 Missense_Mutation p.A691V 0.20 deleterious(0) probably_damaging(0.999) TCGA-CH-5737-01 5 150886733 150886733 A - FAT2 Frame_Shift_Del p.W4167Gfs*32 0.27 TCGA-CH-5737-01 5 160042863 160042863 T G ATP10B Missense_Mutation p.N879H 0.41 deleterious(0) possibly_damaging(0.905) TCGA-CH-5737-01 5 31317551 31317551 G A CDH6 Missense_Mutation p.A528T 0.23 tolerated(0.17) possibly_damaging(0.723) TCGA-CH-5737-01 5 32274132 32274132 A C MTMR12 Missense_Mutation p.F80C 0.04 deleterious(0) probably_damaging(0.999) TCGA-CH-5737-01 5 54635836 54635836 A G SKIV2L2 Splice_Site p.X172_splice 0.16 TCGA-CH-5737-01 6 117663708 117663708 C A ROS1 Splice_Site p.X1509_splice 0.23 TCGA-CH-5737-01 6 26252136 26252136 G T HIST1H2BH Missense_Mutation p.K86N 0.08 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-CH-5737-01 6 42975223 42975223 C T PPP2R5D Silent p.I235I 0.07 TCGA-CH-5737-01 7 84694822 84694822 A G SEMA3D Silent p.D212D 0.06 TCGA-CH-5737-01 7 95053856 95053856 A G PON2 Missense_Mutation p.L39P 0.08 tolerated(0.18) possibly_damaging(0.68) TCGA-CH-5737-01 8 27605731 27605731 G C CCDC25 Silent p.V138V 0.18 TCGA-CH-5737-01 9 131023799 131023799 T A GOLGA2 Missense_Mutation p.K395N 0.04 deleterious(0.04) benign(0.017) TCGA-CH-5737-01 9 13224386 13224386 T G MPDZ Missense_Mutation p.K127T 0.20 tolerated(0.05) benign(0.03) TCGA-CH-5737-01 9 32632973 32632973 C T TAF1L Missense_Mutation p.A869T 0.03 deleterious(0) probably_damaging(0.995) TCGA-CH-5737-01 9 35753744 35753744 T G MSMP Missense_Mutation p.K51T 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-CH-5737-01 X 38540490 38540490 G C TSPAN7 Missense_Mutation p.E210D 0.35 tolerated(0.09) benign(0.12) TCGA-CH-5737-01 X 74318818 74318818 C A ABCB7 Missense_Mutation p.A139S 0.44 tolerated(0.48) benign(0.17) TCGA-CH-5738-01 10 35500241 35500241 G A CREM Intron 0.22 TCGA-CH-5738-01 11 47800613 47800613 C T NUP160 3'UTR 0.08 TCGA-CH-5738-01 11 66000449 66000452 CAGG AAAGA PACS1 Frame_Shift_Ins p.Q584Kfs*96 0.11 TCGA-CH-5738-01 13 25672249 25672249 C T PABPC3 3'UTR 0.07 TCGA-CH-5738-01 14 94401108 94401108 C T ASB2 Missense_Mutation p.R601Q 0.30 deleterious(0) probably_damaging(1) TCGA-CH-5738-01 15 81234649 81234649 C T KIAA1199 Missense_Mutation p.H1224Y 0.21 deleterious(0.01) possibly_damaging(0.723) TCGA-CH-5738-01 17 11790187 11790187 G A DNAH9 Missense_Mutation p.E3673K 0.04 possibly_damaging(0.607) TCGA-CH-5738-01 17 18137336 18137336 C T LLGL1 Silent p.D187D 0.12 TCGA-CH-5738-01 17 62856432 62856432 C T LRRC37A3 Missense_Mutation p.A1278T 0.05 tolerated(1) benign(0.001) TCGA-CH-5738-01 19 34818760 34818760 G A KIAA0355 Missense_Mutation p.A311T 0.13 tolerated(0.23) probably_damaging(0.981) TCGA-CH-5738-01 19 37618589 37618589 T A ZNF420 Missense_Mutation p.F232L 0.05 deleterious(0) possibly_damaging(0.453) TCGA-CH-5738-01 19 51301263 51301263 G A C19orf48 3'UTR 0.31 TCGA-CH-5738-01 1 159827904 159827904 G A VSIG8 Missense_Mutation p.R136W 0.29 deleterious(0) probably_damaging(0.997) TCGA-CH-5738-01 1 203316790 203316790 C T FMOD Silent p.T203T 0.23 TCGA-CH-5738-01 1 205884398 205884398 C T SLC26A9 Intron 0.10 TCGA-CH-5738-01 21 28211980 28211980 C T ADAMTS1 Missense_Mutation p.V652I 0.06 tolerated(0.08) benign(0.083) TCGA-CH-5738-01 22 33260926 33260926 T C SYN3 Silent p.T229T 0.04 TCGA-CH-5738-01 2 179444120 179444120 A T TTN Missense_Mutation p.V22546E 0.05 TCGA-CH-5738-01 2 201468741 201468741 C A AOX1 Missense_Mutation p.T197K 0.06 tolerated(0.54) benign(0.104) TCGA-CH-5738-01 4 113468559 113468559 T C C4orf21 Missense_Mutation p.E1827G 0.07 deleterious(0.03) benign(0.023) TCGA-CH-5738-01 4 54424152 54424152 C A LNX1 Intron 0.06 TCGA-CH-5738-01 5 145969623 145969623 C T PPP2R2B Missense_Mutation p.D410N 0.03 tolerated(0.16) possibly_damaging(0.874) TCGA-CH-5738-01 5 71493006 71493006 G A MAP1B Missense_Mutation p.R1275H 0.11 probably_damaging(0.991) TCGA-CH-5738-01 X 151869832 151869832 C T MAGEA6 Silent p.H174H 0.08 TCGA-CH-5738-01 X 84561266 84561266 G T POF1B Nonsense_Mutation p.S413* 0.24 TCGA-CH-5739-01 10 85981837 85981837 G A LRIT2 Missense_Mutation p.R498C 0.31 tolerated(0.15) benign(0.001) TCGA-CH-5739-01 11 123886542 123886542 C T OR10G4 Silent p.S87S 0.07 TCGA-CH-5739-01 11 18159642 18159642 C T MRGPRX3 Missense_Mutation p.T298M 0.14 deleterious(0.02) benign(0.1) TCGA-CH-5739-01 11 62038408 62038408 G C SCGB2A2 Silent p.V37V 0.30 TCGA-CH-5739-01 13 25416253 25416253 A G RNF17 Missense_Mutation p.I853V 0.29 tolerated(0.17) possibly_damaging(0.456) TCGA-CH-5739-01 13 47269054 47269054 G T LRCH1 Nonsense_Mutation p.E383* 0.49 TCGA-CH-5739-01 13 88328403 88328403 T C SLITRK5 Missense_Mutation p.S254P 0.23 tolerated(0.54) benign(0.004) TCGA-CH-5739-01 15 65685846 65685846 G A IGDCC4 Nonsense_Mutation p.R580* 0.29 TCGA-CH-5739-01 16 5075311 5075311 G A NAGPA 3'UTR 0.28 TCGA-CH-5739-01 17 40474448 40474448 A G STAT3 Silent p.A651A 0.30 TCGA-CH-5739-01 17 48264184 48264184 C T COL1A1 Missense_Mutation p.D1211N 0.28 unknown(0) TCGA-CH-5739-01 17 78079689 78079689 G T GAA Missense_Mutation p.V230L 0.38 deleterious(0.04) benign(0.273) TCGA-CH-5739-01 18 47906549 47906549 G A SKA1 Missense_Mutation p.V48I 0.33 tolerated(0.29) benign(0.006) TCGA-CH-5739-01 19 8959691 8959691 G A MUC16 Missense_Mutation p.R14481W 0.35 probably_damaging(0.975) TCGA-CH-5739-01 1 110925493 110925493 C G SLC16A4 Missense_Mutation p.W61C 0.28 deleterious(0) probably_damaging(0.996) TCGA-CH-5739-01 1 117529548 117529548 C T PTGFRN Missense_Mutation p.R867W 0.34 deleterious(0.01) unknown(0) TCGA-CH-5739-01 1 147230995 147230995 G A GJA5 Missense_Mutation p.R118W 0.26 deleterious(0.02) possibly_damaging(0.462) TCGA-CH-5739-01 1 152382359 152382359 G A CRNN Missense_Mutation p.P400L 0.31 tolerated(1) benign(0) TCGA-CH-5739-01 1 152777624 152777624 C T LCE1C Missense_Mutation p.G111S 0.25 tolerated_low_confidence(0.42) unknown(0) TCGA-CH-5739-01 1 152800255 152800255 G A LCE1A Missense_Mutation p.G103S 0.24 tolerated_low_confidence(0.59) unknown(0) TCGA-CH-5739-01 1 186289546 186289546 G A TPR Missense_Mutation p.P2156S 0.19 benign(0.199) TCGA-CH-5739-01 1 23650124 23650124 T C HNRNPR Silent p.P200P 0.05 TCGA-CH-5739-01 1 68906685 68906685 T C RPE65 Splice_Site p.X166_splice 0.05 TCGA-CH-5739-01 1 94514475 94514475 C T ABCA4 Missense_Mutation p.E898K 0.08 tolerated(0.62) benign(0.014) TCGA-CH-5739-01 2 128408804 128408804 G A GPR17 Silent p.P193P 0.27 TCGA-CH-5739-01 2 201846109 201846109 G A FAM126B Nonsense_Mutation p.Q493* 0.33 TCGA-CH-5739-01 2 68882252 68882252 G T PROKR1 Silent p.V242V 0.26 TCGA-CH-5739-01 2 9595849 9595849 C G CPSF3 Silent p.P522P 0.10 TCGA-CH-5739-01 3 108117984 108117984 A T MYH15 Missense_Mutation p.C1643S 0.41 tolerated(0.13) benign(0.005) TCGA-CH-5739-01 3 128996296 128996296 C T COPG1 3'UTR 0.33 TCGA-CH-5739-01 3 133525537 133525537 T G SRPRB Missense_Mutation p.L80R 0.10 deleterious(0) probably_damaging(0.999) TCGA-CH-5739-01 5 123973554 123973554 T A ZNF608 3'UTR 0.26 TCGA-CH-5739-01 7 141635653 141635653 T C CLEC5A Silent p.K102K 0.20 TCGA-CH-5739-01 7 158451099 158451099 T A NCAPG2 Missense_Mutation p.D664V 0.31 deleterious(0.01) benign(0.152) TCGA-CH-5739-01 7 3990604 3990604 G A SDK1 Silent p.P299P 0.36 TCGA-CH-5739-01 8 123964946 123964946 G T ZHX2 Missense_Mutation p.G399V 0.29 deleterious(0.01) probably_damaging(0.927) TCGA-CH-5739-01 9 101900330 101900330 G T TGFBR1 Missense_Mutation p.R255L 0.28 deleterious(0) probably_damaging(0.988) TCGA-CH-5739-01 X 34962549 34962549 C T FAM47B Missense_Mutation p.A534V 0.21 tolerated(0.13) benign(0.128) TCGA-CH-5740-01 10 89720826 89720826 A G PTEN Missense_Mutation p.D326G 0.04 deleterious(0) probably_damaging(0.995) TCGA-CH-5740-01 11 494682 494683 GG - RNH1 3'UTR 0.22 TCGA-CH-5740-01 12 50349301 50349301 G A AQP2 Silent p.P242P 0.08 TCGA-CH-5740-01 15 101938639 101938639 A C PCSK6 Silent p.A321A 0.03 TCGA-CH-5740-01 17 26680002 26680002 G A POLDIP2 Silent p.S185S 0.31 TCGA-CH-5740-01 19 45515192 45515192 A T RELB Splice_Site p.X55_splice 0.13 TCGA-CH-5740-01 19 48202015 48202015 C T GLTSCR1 Missense_Mutation p.P1125S 0.29 possibly_damaging(0.891) TCGA-CH-5740-01 1 107961230 107961230 G A NTNG1 Intron 0.37 TCGA-CH-5740-01 1 111969101 111969101 T C OVGP1 Missense_Mutation p.D73G 0.05 deleterious(0.02) probably_damaging(0.998) TCGA-CH-5740-01 1 152636733 152636733 G T LCE2D Missense_Mutation p.S51I 0.36 tolerated(0.12) unknown(0) TCGA-CH-5740-01 1 159033301 159033301 G A AIM2 Missense_Mutation p.T327I 0.21 tolerated(0.11) benign(0.123) TCGA-CH-5740-01 1 207870862 207870862 C A CR1L Missense_Mutation p.P293T 0.30 deleterious(0) probably_damaging(0.979) TCGA-CH-5740-01 1 207932991 207932991 T G CD46 Missense_Mutation p.L133V 0.33 tolerated(0.13) possibly_damaging(0.683) TCGA-CH-5740-01 1 248004290 248004290 C A OR11L1 Missense_Mutation p.K303N 0.46 deleterious(0.04) possibly_damaging(0.621) TCGA-CH-5740-01 1 75038884 75038884 C A C1orf173 Missense_Mutation p.R837M 0.08 deleterious(0.04) benign(0.332) TCGA-CH-5740-01 20 30584459 30584459 C T XKR7 Silent p.R313R 0.30 TCGA-CH-5740-01 20 30904102 30904102 C T KIF3B Nonsense_Mutation p.R496* 0.32 TCGA-CH-5740-01 21 42852443 42852443 C T TMPRSS2 Missense_Mutation p.E215K 0.36 deleterious(0) possibly_damaging(0.832) TCGA-CH-5740-01 3 111564793 111564793 T C PLCXD2 3'UTR 0.34 TCGA-CH-5740-01 3 168807995 168807995 T - MECOM Frame_Shift_Del p.K942Rfs*4 0.11 TCGA-CH-5740-01 3 195515854 195515854 G A MUC4 Missense_Mutation p.S866L 0.07 unknown(0) TCGA-CH-5740-01 4 5016888 5016888 C T CYTL1 Missense_Mutation p.R134H 0.34 tolerated_low_confidence(0.37) benign(0.004) TCGA-CH-5740-01 4 73186511 73186511 C G ADAMTS3 Missense_Mutation p.R341T 0.04 deleterious(0.04) benign(0.089) TCGA-CH-5740-01 6 109476463 109476466 AAGG - CEP57L1 Frame_Shift_Del p.E205Kfs*25 0.26 TCGA-CH-5740-01 6 123127429 123127429 G A SMPDL3A Missense_Mutation p.S324N 0.10 tolerated(0.27) benign(0.003) TCGA-CH-5740-01 6 76604978 76604978 G A MYO6 Splice_Site p.X1046_splice 0.31 TCGA-CH-5740-01 7 100028387 100028387 A C MEPCE Missense_Mutation p.H249P 0.06 tolerated(0.29) benign(0.034) TCGA-CH-5740-01 9 130504081 130504081 G C SH2D3C Missense_Mutation p.L692V 0.33 deleterious(0) probably_damaging(0.998) TCGA-CH-5741-01 11 101946634 101946634 G T C11orf70 Nonsense_Mutation p.E156* 0.08 TCGA-CH-5741-01 11 123988076 123988076 T C VWA5A Intron 0.17 TCGA-CH-5741-01 11 88781128 88781128 G A GRM5 5'UTR 0.38 TCGA-CH-5741-01 12 56848144 56848144 C T MIP Missense_Mutation p.R85H 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-CH-5741-01 12 66725033 66725033 T C HELB Missense_Mutation p.Y924H 0.29 deleterious(0) probably_damaging(0.987) TCGA-CH-5741-01 14 102474613 102474613 C A DYNC1H1 Silent p.S1972S 0.45 TCGA-CH-5741-01 14 57114085 57114085 C T TMEM260 Missense_Mutation p.S665L 0.07 tolerated(0.1) benign(0.206) TCGA-CH-5741-01 17 38911399 38911399 C A KRT25 Missense_Mutation p.G42V 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-CH-5741-01 17 900589 900589 C A TIMM22 Nonsense_Mutation p.C69* 0.06 TCGA-CH-5741-01 18 21663014 21663014 T C TTC39C Missense_Mutation p.M318T 0.61 deleterious(0) benign(0.369) TCGA-CH-5741-01 19 3600348 3600348 C T TBXA2R Nonsense_Mutation p.W95* 0.05 TCGA-CH-5741-01 19 4498827 4498827 T C HDGFRP2 Missense_Mutation p.L497P 0.11 deleterious(0) possibly_damaging(0.883) TCGA-CH-5741-01 19 54760066 54760066 G T LILRB5 Silent p.T165T 0.35 TCGA-CH-5741-01 1 155316142 155316142 T C ASH1L Intron 0.03 TCGA-CH-5741-01 1 157667368 157667368 G T FCRL3 Intron 0.42 TCGA-CH-5741-01 1 24676595 24676595 C G GRHL3 Nonsense_Mutation p.Y559* 0.05 TCGA-CH-5741-01 20 10277647 10277647 G A SNAP25 Missense_Mutation p.R119H 0.41 deleterious(0.04) benign(0.141) TCGA-CH-5741-01 2 179659235 179659235 A T TTN Missense_Mutation p.V430D 0.04 TCGA-CH-5741-01 2 42513409 42513409 C T EML4 Missense_Mutation p.P338S 0.37 deleterious(0.03) benign(0.056) TCGA-CH-5741-01 3 39230128 39230128 C T XIRP1 Missense_Mutation p.R270H 0.36 deleterious(0) probably_damaging(0.999) TCGA-CH-5741-01 4 20751288 20751288 G A KCNIP4 Silent p.F142F 0.20 TCGA-CH-5741-01 5 115177236 115177236 G A ATG12 Missense_Mutation p.P5L 0.43 deleterious_low_confidence(0.01) benign(0.016) TCGA-CH-5741-01 5 179290365 179290365 A G TBC1D9B 3'UTR 0.08 TCGA-CH-5741-01 5 1816163 1816163 C A NDUFS6 3'UTR 0.10 TCGA-CH-5741-01 5 35991394 35991394 C T UGT3A1 5'UTR 0.08 TCGA-CH-5741-01 7 888226 888226 A G SUN1 Intron 0.30 TCGA-CH-5741-01 7 96653697 96653697 A T DLX5 Missense_Mutation p.V80E 0.30 tolerated(0.2) benign(0.072) TCGA-CH-5741-01 8 54791832 54791832 A T RGS20 Silent p.A60A 0.34 TCGA-CH-5741-01 8 70498706 70498706 A G SULF1 Missense_Mutation p.N176S 0.05 deleterious(0) probably_damaging(0.995) TCGA-CH-5741-01 8 94746488 94746488 C G RBM12B Missense_Mutation p.Q717H 0.38 tolerated_low_confidence(0.2) benign(0) TCGA-CH-5741-01 9 32573158 32573158 G T NDUFB6 5'UTR 0.40 TCGA-CH-5741-01 X 19026198 19026199 - T GPR64 Frame_Shift_Ins p.I489Nfs*10 0.46 TCGA-CH-5741-01 X 70471027 70471027 C A ZMYM3 Splice_Site p.X260_splice 0.81 TCGA-CH-5741-01 X 9912815 9912815 C T SHROOM2 Silent p.P1482P 0.06 TCGA-CH-5744-01 11 113105824 113105824 C T NCAM1 Missense_Mutation p.A637V 0.32 deleterious(0) probably_damaging(0.999) TCGA-CH-5744-01 11 118343971 118343971 T C KMT2A Silent p.A699A 0.21 TCGA-CH-5744-01 11 123893785 123893785 C T OR10G9 Silent p.D22D 0.05 TCGA-CH-5744-01 11 123909643 123909643 G A OR10G7 Silent p.D22D 0.16 TCGA-CH-5744-01 11 129312807 129312807 A G BARX2 Missense_Mutation p.K189R 0.05 tolerated(0.15) probably_damaging(1) TCGA-CH-5744-01 12 101876611 101876611 A G SPIC Silent p.Q84Q 0.28 TCGA-CH-5744-01 12 57920425 57920425 G - MBD6 Frame_Shift_Del p.M501Wfs*29 0.29 TCGA-CH-5744-01 13 22275633 22275633 G A FGF9 3'UTR 0.31 TCGA-CH-5744-01 14 100405575 100405575 G A EML1 Missense_Mutation p.V764I 0.26 tolerated(0.26) benign(0.002) TCGA-CH-5744-01 15 44094002 44094002 T G HYPK Nonstop_Mutation p.*130Gext*11 0.25 TCGA-CH-5744-01 16 3440104 3440104 T A ZSCAN32 Silent p.V7V 0.23 TCGA-CH-5744-01 19 11227612 11227612 C T LDLR Missense_Mutation p.R595W 0.17 deleterious(0) probably_damaging(1) TCGA-CH-5744-01 19 17950419 17950419 T A JAK3 Silent p.G436G 0.14 TCGA-CH-5744-01 19 50248602 50248602 C T TSKS Silent p.V348V 0.20 TCGA-CH-5744-01 19 51363416 51363416 T A KLK3 3'UTR 0.27 TCGA-CH-5744-01 19 51363418 51363418 G A KLK3 3'UTR 0.26 TCGA-CH-5744-01 19 5768180 5768180 A C CATSPERD Missense_Mutation p.K521Q 0.27 tolerated(0.07) benign(0.394) TCGA-CH-5744-01 1 181725167 181725167 C T CACNA1E Silent p.Y1355Y 0.24 TCGA-CH-5744-01 2 141473639 141473639 A C LRP1B Missense_Mutation p.L1976V 0.30 possibly_damaging(0.694) TCGA-CH-5744-01 2 225379456 225379456 T C CUL3 Missense_Mutation p.N138D 0.24 tolerated(0.41) possibly_damaging(0.593) TCGA-CH-5744-01 3 111426940 111426940 C T PLCXD2 Missense_Mutation p.R111C 0.17 deleterious(0) probably_damaging(0.995) TCGA-CH-5744-01 3 51101984 51101984 G A DOCK3 Missense_Mutation p.E141K 0.22 tolerated(0.07) benign(0.427) TCGA-CH-5744-01 3 51101986 51101986 G A DOCK3 Silent p.E141E 0.23 TCGA-CH-5744-01 3 51102013 51102013 G A DOCK3 Silent p.L150L 0.22 TCGA-CH-5744-01 3 72428496 72428496 T C RYBP Missense_Mutation p.K170E 0.26 deleterious(0.04) possibly_damaging(0.801) TCGA-CH-5744-01 5 133634385 133634385 C T CDKL3 Missense_Mutation p.C579Y 0.22 tolerated_low_confidence(0.23) benign(0.021) TCGA-CH-5744-01 5 139189047 139189047 T C PSD2 Missense_Mutation p.S8P 0.12 tolerated_low_confidence(0.16) benign(0) TCGA-CH-5744-01 5 153078545 153078545 G A GRIA1 Missense_Mutation p.R465H 0.31 deleterious(0.01) possibly_damaging(0.82) TCGA-CH-5744-01 5 159992774 159992774 C G ATP10B Missense_Mutation p.V1358L 0.21 tolerated(0.65) benign(0.013) TCGA-CH-5744-01 5 82373245 82373245 G A TMEM167A 5'UTR 0.19 TCGA-CH-5744-01 7 100345786 100345786 G T ZAN Missense_Mutation p.K350N 0.16 benign(0.046) TCGA-CH-5744-01 8 25745360 25745360 C T EBF2 Missense_Mutation p.E294K 0.40 deleterious(0.04) probably_damaging(0.957) TCGA-CH-5744-01 9 111662626 111662626 C T IKBKAP Missense_Mutation p.V682M 0.16 tolerated(0.15) benign(0.039) TCGA-CH-5744-01 9 117164896 117164896 G T DFNB31 3'UTR 0.29 TCGA-CH-5744-01 9 7169914 7169914 G C KDM4C Intron 0.18 TCGA-CH-5744-01 9 77427337 77427337 C T TRPM6 Missense_Mutation p.E441K 0.35 deleterious(0) probably_damaging(0.997) TCGA-CH-5744-01 X 70280884 70280884 C A SNX12 Silent p.P157P 0.11 TCGA-CH-5745-01 10 115527188 115527188 C T PLEKHS1 Silent p.V97V 0.25 TCGA-CH-5745-01 10 15146203 15146203 G C RPP38 3'UTR 0.29 TCGA-CH-5745-01 10 91359112 91359112 A T PANK1 Missense_Mutation p.C403S 0.10 tolerated(0.75) benign(0.018) TCGA-CH-5745-01 11 5275542 5275542 C T HBG2 Missense_Mutation p.V99M 0.14 deleterious(0.01) possibly_damaging(0.673) TCGA-CH-5745-01 11 55606429 55606429 C A OR5D16 Missense_Mutation p.L68I 0.14 deleterious(0) probably_damaging(0.96) TCGA-CH-5745-01 11 88583140 88583140 G A GRM5 Missense_Mutation p.T282M 0.32 deleterious(0) probably_damaging(1) TCGA-CH-5745-01 12 15731856 15731856 C T PTPRO Missense_Mutation p.R967C 0.14 deleterious(0) probably_damaging(0.988) TCGA-CH-5745-01 13 37006834 37006834 G A CCNA1 Missense_Mutation p.E26K 0.20 tolerated_low_confidence(0.25) benign(0) TCGA-CH-5745-01 14 93264023 93264023 A C GOLGA5 Missense_Mutation p.T81P 0.05 tolerated(0.07) possibly_damaging(0.889) TCGA-CH-5745-01 15 41384239 41384239 T G INO80 Missense_Mutation p.S175R 0.23 tolerated(0.14) benign(0.001) TCGA-CH-5745-01 15 65559013 65559013 C T PARP16 Missense_Mutation p.A136T 0.04 tolerated(0.35) benign(0.008) TCGA-CH-5745-01 16 11785489 11785489 G A TXNDC11 Silent p.F519F 0.33 TCGA-CH-5745-01 16 22120821 22120821 G A VWA3A Missense_Mutation p.G168R 0.36 deleterious(0) probably_damaging(0.998) TCGA-CH-5745-01 16 27782957 27782957 G A KIAA0556 Silent p.P1394P 0.05 TCGA-CH-5745-01 17 40934857 40934857 G A WNK4 Missense_Mutation p.V234I 0.29 deleterious(0) unknown(0) TCGA-CH-5745-01 17 76497504 76497504 C A DNAH17-AS1 3'UTR 0.07 TCGA-CH-5745-01 1 152671370 152671370 G A LCE2A 5'UTR 0.28 TCGA-CH-5745-01 1 158617396 158617396 G A SPTA1 Missense_Mutation p.R1277C 0.06 tolerated(0.07) benign(0.007) TCGA-CH-5745-01 1 186094769 186094769 A G HMCN1 Missense_Mutation p.Y4178C 0.05 probably_damaging(0.999) TCGA-CH-5745-01 20 17705710 17705710 G A BANF2 Missense_Mutation p.E21K 0.23 deleterious(0.01) possibly_damaging(0.864) TCGA-CH-5745-01 20 62321336 62321336 G A RTEL1 Intron 0.29 TCGA-CH-5745-01 22 19119550 19119550 C A TSSK2 Missense_Mutation p.S213Y 0.37 tolerated(0.2) benign(0.082) TCGA-CH-5745-01 22 29628247 29628247 C A EMID1 Missense_Mutation p.P227T 0.33 tolerated(0.37) benign(0.419) TCGA-CH-5745-01 22 36906970 36906970 C T EIF3D 3'UTR 0.06 TCGA-CH-5745-01 2 133540002 133540002 G A NCKAP5 Missense_Mutation p.A1461V 0.20 tolerated(0.69) benign(0.019) TCGA-CH-5745-01 2 64114692 64114692 A T UGP2 Missense_Mutation p.S410C 0.03 deleterious(0.01) benign(0.05) TCGA-CH-5745-01 3 184104857 184104857 A G CHRD Missense_Mutation p.D770G 0.24 tolerated(0.09) benign(0.11) TCGA-CH-5745-01 3 197497068 197497068 G A FYTTD1 Silent p.Q150Q 0.15 TCGA-CH-5745-01 3 66463350 66463350 T G LRIG1 Missense_Mutation p.N246H 0.21 tolerated(0.05) benign(0.14) TCGA-CH-5745-01 4 156835562 156835562 C T TDO2 Missense_Mutation p.R272C 0.28 tolerated(0.18) probably_damaging(0.956) TCGA-CH-5745-01 7 138764546 138764546 G C ZC3HAV1 Missense_Mutation p.L381V 0.25 tolerated(0.38) possibly_damaging(0.899) TCGA-CH-5745-01 8 144995013 144995013 G T PLEC Silent p.I3129I 0.07 TCGA-CH-5745-01 8 23539135 23539135 A - NKX3-1 Frame_Shift_Del p.Y102Ifs*35 0.23 TCGA-CH-5745-01 X 129155089 129155089 C A BCORL1 Missense_Mutation p.Q1191K 0.11 benign(0.2) TCGA-CH-5746-01 12 21350054 21350054 C A SLCO1B1 Missense_Mutation p.T301K 0.19 deleterious(0.02) benign(0.248) TCGA-CH-5746-01 12 89917323 89917323 C G GALNT4 Missense_Mutation p.G335A 0.14 deleterious(0) probably_damaging(0.999) TCGA-CH-5746-01 15 69348910 69348910 C A NOX5 Missense_Mutation p.F724L 0.15 deleterious(0.03) possibly_damaging(0.766) TCGA-CH-5746-01 19 11558391 11558391 G A PRKCSH Silent p.E329E 0.20 TCGA-CH-5746-01 1 16946368 16946368 A G RP5-1182A14.5 3'Flank 0.11 TCGA-CH-5746-01 1 228612642 228612642 G A HIST3H3 Missense_Mutation p.R129C 0.06 tolerated_low_confidence(0.07) benign(0.031) TCGA-CH-5746-01 1 26691329 26691329 C A ZNF683 Silent p.L236L 0.10 TCGA-CH-5746-01 1 86048170 86048170 T C CYR61 Missense_Mutation p.W236R 0.11 deleterious(0) probably_damaging(1) TCGA-CH-5746-01 21 22849736 22849736 A G NCAM2 Missense_Mutation p.Y674C 0.12 tolerated(0.08) possibly_damaging(0.817) TCGA-CH-5746-01 2 220406592 220406592 G T CHPF Missense_Mutation p.L212I 0.09 tolerated(0.22) possibly_damaging(0.566) TCGA-CH-5746-01 5 133914476 133914476 G A JADE2 Silent p.G614G 0.08 TCGA-CH-5746-01 6 85448257 85448257 G A TBX18 Missense_Mutation p.R353W 0.18 deleterious(0) probably_damaging(0.99) TCGA-CH-5746-01 8 26484737 26484737 G A DPYSL2 Missense_Mutation p.E183K 0.18 tolerated(0.06) possibly_damaging(0.477) TCGA-CH-5748-01 10 135369308 135369308 C T SYCE1 Missense_Mutation p.R232H 0.05 tolerated(0.09) probably_damaging(1) TCGA-CH-5748-01 10 90342915 90342915 C T RNLS Missense_Mutation p.M11I 0.05 deleterious(0.05) benign(0.005) TCGA-CH-5748-01 11 19955124 19955124 C G NAV2 Missense_Mutation p.A468G 0.06 tolerated(0.37) benign(0) TCGA-CH-5748-01 11 3721914 3721914 T C NUP98 Missense_Mutation p.N1223S 0.05 tolerated(0.43) probably_damaging(0.994) TCGA-CH-5748-01 11 59282922 59282922 C T OR4D9 Silent p.C179C 0.05 TCGA-CH-5748-01 12 7177943 7177943 C T C1S Silent p.P685P 0.10 TCGA-CH-5748-01 12 76881371 76881371 G T OSBPL8 5'UTR 0.09 TCGA-CH-5748-01 13 113825982 113825982 G A PROZ Missense_Mutation p.D278N 0.06 tolerated(0.15) benign(0.018) TCGA-CH-5748-01 13 39262558 39262558 T C FREM2 Silent p.L359L 0.06 TCGA-CH-5748-01 13 99948335 99948335 T G GPR183 Missense_Mutation p.D22A 0.07 deleterious(0.03) possibly_damaging(0.629) TCGA-CH-5748-01 14 60619800 60619800 A C DHRS7 Missense_Mutation p.L164V 0.08 tolerated(0.08) possibly_damaging(0.718) TCGA-CH-5748-01 15 76584842 76584842 G A ETFA Missense_Mutation p.P94L 0.06 tolerated(0.06) probably_damaging(0.921) TCGA-CH-5748-01 16 2140788 2140788 C T PKD1 Missense_Mutation p.V4009M 0.15 probably_damaging(0.989) TCGA-CH-5748-01 16 24268023 24268023 G A CACNG3 5'UTR 0.07 TCGA-CH-5748-01 16 28157508 28157508 T C XPO6 Missense_Mutation p.Y414C 0.04 deleterious(0) probably_damaging(0.971) TCGA-CH-5748-01 16 309488 309488 A G ITFG3 Missense_Mutation p.Y92C 0.05 deleterious(0) probably_damaging(1) TCGA-CH-5748-01 16 3786756 3786756 A G CREBBP Silent p.H1485H 0.08 TCGA-CH-5748-01 17 1359240 1359240 A C CRK Missense_Mutation p.S58A 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-CH-5748-01 17 33462276 33462276 C T NLE1 Silent p.R402R 0.10 TCGA-CH-5748-01 17 7221921 7221921 A G NEURL4 Missense_Mutation p.S1253P 0.11 tolerated(0.12) benign(0.133) TCGA-CH-5748-01 19 38160949 38160949 T A ZNF781 Missense_Mutation p.E34V 0.07 deleterious(0.01) probably_damaging(0.933) TCGA-CH-5748-01 19 50455562 50455562 C T SIGLEC11 Missense_Mutation p.V581I 0.06 tolerated(0.99) benign(0.001) TCGA-CH-5748-01 1 150235768 150235768 G C CA14 Missense_Mutation p.R264P 0.09 deleterious(0) probably_damaging(1) TCGA-CH-5748-01 1 32657918 32657918 G C TXLNA Missense_Mutation p.D324H 0.08 deleterious(0) probably_damaging(0.922) TCGA-CH-5748-01 1 46493536 46493539 GTAA - MAST2 Splice_Site p.X684_splice 0.09 TCGA-CH-5748-01 1 55457539 55457539 C T TMEM61 Silent p.Y132Y 0.07 TCGA-CH-5748-01 1 65147750 65147750 C T CACHD1 Missense_Mutation p.R1132C 0.06 deleterious(0.01) possibly_damaging(0.619) TCGA-CH-5748-01 1 68948183 68948183 C G DEPDC1 Missense_Mutation p.E436D 0.04 tolerated(0.31) benign(0.002) TCGA-CH-5748-01 20 4770305 4770305 G A RASSF2 Silent p.N192N 0.09 TCGA-CH-5748-01 22 44892839 44892839 G A LDOC1L Nonsense_Mutation p.R200* 0.15 TCGA-CH-5748-01 2 193056699 193056699 T C TMEFF2 Silent p.E63E 0.10 TCGA-CH-5748-01 2 38818746 38818746 G C HNRNPLL Silent p.V73V 0.12 TCGA-CH-5748-01 3 141497117 141497117 G A GRK7 5'UTR 0.08 TCGA-CH-5748-01 3 88202584 88202584 C T C3orf38 Missense_Mutation p.P113L 0.06 tolerated(0.08) possibly_damaging(0.517) TCGA-CH-5748-01 4 178274821 178274821 C A NEIL3 Missense_Mutation p.P467T 0.08 tolerated(0.2) benign(0.001) TCGA-CH-5748-01 4 48994016 48994016 T C CWH43 Silent p.Y140Y 0.10 TCGA-CH-5748-01 4 8235132 8235132 G A SH3TC1 Silent p.G1058G 0.15 TCGA-CH-5748-01 4 8467202 8467202 G C TRMT44 Missense_Mutation p.E470Q 0.04 deleterious(0.01) benign(0.334) TCGA-CH-5748-01 5 140682861 140682861 T C SLC25A2 Missense_Mutation p.Y191C 0.09 deleterious(0) probably_damaging(0.999) TCGA-CH-5748-01 5 53814839 53814839 A T SNX18 Missense_Mutation p.R353W 0.11 deleterious(0) probably_damaging(0.99) TCGA-CH-5748-01 5 94857934 94857934 C G TTC37 Missense_Mutation p.G612A 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-CH-5748-01 6 66205253 66205253 A T EYS Silent p.S17S 0.15 TCGA-CH-5748-01 6 87725481 87725481 C A HTR1E Silent p.I143I 0.12 TCGA-CH-5748-01 8 27762295 27762295 T G SCARA5 Missense_Mutation p.S385R 0.10 tolerated(0.16) benign(0.008) TCGA-CH-5748-01 8 48811034 48811034 G A PRKDC Missense_Mutation p.P1154S 0.30 possibly_damaging(0.839) TCGA-CH-5748-01 9 121971070 121971070 G A BRINP1 Missense_Mutation p.R358C 0.07 deleterious(0) possibly_damaging(0.454) TCGA-CH-5748-01 9 138378219 138378219 C T PPP1R26 Silent p.A621A 0.07 TCGA-CH-5748-01 9 40772246 40772246 C A ZNF658 Missense_Mutation p.R1010I 0.17 tolerated(0.17) possibly_damaging(0.715) TCGA-CH-5748-01 9 94495690 94495690 C T ROR2 Silent p.T217T 0.08 TCGA-CH-5748-01 X 101395981 101395981 C T TCEAL6 Missense_Mutation p.R108Q 0.23 tolerated(0.08) possibly_damaging(0.63) TCGA-CH-5748-01 X 70349258 70349258 C T MED12 Missense_Mutation p.L1224F 0.18 probably_damaging(0.999) TCGA-CH-5750-01 10 15317865 15317865 G A FAM171A1 Missense_Mutation p.S136L 0.16 tolerated(0.94) probably_damaging(0.993) TCGA-CH-5750-01 10 51584846 51584846 G A NCOA4 Silent p.R331R 0.03 TCGA-CH-5750-01 10 62149335 62149335 C - ANK3 5'UTR 0.33 TCGA-CH-5750-01 10 64430084 64430084 G A ZNF365 3'UTR 0.36 TCGA-CH-5750-01 11 118186262 118186262 C A CD3E 3'UTR 0.18 TCGA-CH-5750-01 11 123900990 123900990 G A OR10G8 Missense_Mutation p.V221I 0.05 tolerated(0.3) benign(0.05) TCGA-CH-5750-01 12 130845793 130845793 T G PIWIL1 Missense_Mutation p.D578E 0.27 tolerated(0.16) benign(0.309) TCGA-CH-5750-01 12 8051389 8051389 G A NANOGP1 RNA 0.42 TCGA-CH-5750-01 13 21557700 21557700 G A LATS2 Silent p.A715A 0.03 TCGA-CH-5750-01 13 95862980 95862980 T C ABCC4 Missense_Mutation p.N196S 0.12 deleterious(0.01) probably_damaging(0.954) TCGA-CH-5750-01 15 28387490 28387490 C - HERC2 Frame_Shift_Del p.C3865Lfs*44 0.13 TCGA-CH-5750-01 16 31499068 31499068 G A SLC5A2 Nonsense_Mutation p.W291* 0.23 TCGA-CH-5750-01 16 7657342 7657342 T G RBFOX1 Splice_Site p.X246_splice 0.14 TCGA-CH-5750-01 17 1559946 1559946 A C PRPF8 Missense_Mutation p.L1872R 0.38 deleterious(0) probably_damaging(0.984) TCGA-CH-5750-01 17 1840948 1840948 G A RTN4RL1 Silent p.S56S 0.07 TCGA-CH-5750-01 17 61958402 61958402 G A GH2 Missense_Mutation p.T93M 0.18 tolerated(0.05) possibly_damaging(0.832) TCGA-CH-5750-01 17 6673970 6673970 T C XAF1 Silent p.C172C 0.04 TCGA-CH-5750-01 17 77073870 77073870 C T ENGASE Missense_Mutation p.R114C 0.37 deleterious(0) probably_damaging(0.997) TCGA-CH-5750-01 19 10335297 10335297 A T S1PR2 Silent p.S95S 0.17 TCGA-CH-5750-01 19 13888971 13888971 A - C19orf53 Frame_Shift_Del p.A89Qfs*94 0.28 TCGA-CH-5750-01 19 54803046 54803046 G C LILRA3 Missense_Mutation p.P211A 0.05 deleterious(0.04) probably_damaging(0.978) TCGA-CH-5750-01 19 55669029 55669029 C T TNNI3 5'UTR 0.36 TCGA-CH-5750-01 1 2411659 2411659 G T PLCH2 Missense_Mutation p.G158W 0.26 deleterious(0) probably_damaging(0.999) TCGA-CH-5750-01 1 89206847 89206848 - A PKN2 Frame_Shift_Ins p.S78Kfs*14 0.34 TCGA-CH-5750-01 22 44022442 44022442 G A EFCAB6 Missense_Mutation p.R784C 0.19 deleterious(0) probably_damaging(0.989) TCGA-CH-5750-01 2 125521571 125521571 G A CNTNAP5 Missense_Mutation p.V793I 0.35 deleterious(0) benign(0.158) TCGA-CH-5750-01 2 179472383 179472383 C T TTN Missense_Mutation p.V17678I 0.39 TCGA-CH-5750-01 2 207170939 207170939 C T ZDBF2 Missense_Mutation p.R563W 0.36 tolerated(0.34) probably_damaging(0.919) TCGA-CH-5750-01 2 228858269 228858269 G A SPHKAP Missense_Mutation p.P1568S 0.32 tolerated(0.22) benign(0.26) TCGA-CH-5750-01 2 48026269 48026269 A G MSH6 Missense_Mutation p.R383G 0.29 tolerated(0.21) probably_damaging(0.989) TCGA-CH-5750-01 2 79349167 79349167 C T REG1A Silent p.A79A 0.38 TCGA-CH-5750-01 3 164908014 164908014 T C SLITRK3 Missense_Mutation p.D202G 0.32 deleterious(0) probably_damaging(1) TCGA-CH-5750-01 3 9788936 9788936 A G BRPF1 Missense_Mutation p.N1189S 0.18 tolerated(1) benign(0.026) TCGA-CH-5750-01 4 128577790 128577791 - GT INTU Frame_Shift_Ins p.D229Vfs*7 0.32 TCGA-CH-5750-01 5 111754715 111754716 GA - EPB41L4A Frame_Shift_Del p.P8Gfs*12 0.24 TCGA-CH-5750-01 5 131531126 131531126 C A P4HA2 Silent p.G473G 0.30 TCGA-CH-5750-01 5 140719143 140719143 G A PCDHGA2 Missense_Mutation p.R202H 0.05 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-CH-5750-01 5 149755319 149755319 C T TCOF1 Silent p.P580P 0.25 TCGA-CH-5750-01 5 170395294 170395294 T G RANBP17 Missense_Mutation p.C541W 0.08 deleterious(0) benign(0) TCGA-CH-5750-01 5 41382448 41382448 G A PLCXD3 Nonsense_Mutation p.R98* 0.03 TCGA-CH-5750-01 6 100841663 100841663 C T SIM1 Missense_Mutation p.D424N 0.34 deleterious(0.03) benign(0.22) TCGA-CH-5750-01 6 160237001 160237001 T C PNLDC1 Silent p.S321S 0.03 TCGA-CH-5750-01 6 28227392 28227392 C T NKAPL Silent p.Y81Y 0.32 TCGA-CH-5750-01 6 52616466 52616466 T A GSTA2 Missense_Mutation p.K152M 0.31 deleterious(0.01) possibly_damaging(0.773) TCGA-CH-5750-01 7 102236573 102236573 G T RASA4 Silent p.G247G 0.24 TCGA-CH-5750-01 7 27565971 27565971 G A HIBADH Silent p.D291D 0.23 TCGA-CH-5750-01 7 36435954 36435954 C G ANLN Missense_Mutation p.S33C 0.35 tolerated(0.12) probably_damaging(0.995) TCGA-CH-5750-01 7 77469597 77469597 A G PHTF2 Missense_Mutation p.I9V 0.35 tolerated(0.31) benign(0.003) TCGA-CH-5750-01 8 38899534 38899534 C A ADAM9 Missense_Mutation p.N400K 0.05 tolerated(0.41) benign(0.063) TCGA-CH-5750-01 8 55371662 55371662 G A SOX17 Missense_Mutation p.V118M 0.33 deleterious(0) probably_damaging(0.995) TCGA-CH-5750-01 9 116858374 116858374 C A KIF12 Silent p.L146L 0.18 TCGA-CH-5750-01 9 127572717 127572717 G A OLFML2A 3'UTR 0.44 TCGA-CH-5750-01 X 140985038 140985038 C T MAGEC3 Silent p.F498F 0.06 TCGA-CH-5750-01 X 151336570 151336570 T C GABRA3 3'UTR 0.17 TCGA-CH-5751-01 11 101374961 101374961 G A TRPC6 Missense_Mutation p.R247W 0.31 deleterious(0) probably_damaging(0.997) TCGA-CH-5751-01 11 28058051 28058051 A G KIF18A Silent p.I703I 0.20 TCGA-CH-5751-01 11 67223061 67223061 G A CABP4 Missense_Mutation p.G56D 0.56 tolerated(0.12) benign(0.005) TCGA-CH-5751-01 11 67412278 67412278 G A ACY3 Missense_Mutation p.R233C 0.38 deleterious(0.01) benign(0.096) TCGA-CH-5751-01 13 88329453 88329453 C T SLITRK5 Missense_Mutation p.R604C 0.09 deleterious(0) probably_damaging(0.992) TCGA-CH-5751-01 14 101498368 101498368 C T MIR543 RNA 0.06 TCGA-CH-5751-01 14 31344035 31344035 G T COCH Intron 0.05 TCGA-CH-5751-01 14 66208993 66208993 G C FUT8 Silent p.V531V 0.09 TCGA-CH-5751-01 16 27455956 27455956 C T IL21R Missense_Mutation p.R201W 0.03 deleterious(0) probably_damaging(1) TCGA-CH-5751-01 17 18638817 18638817 G A TRIM16L 3'UTR 0.11 TCGA-CH-5751-01 17 78187975 78187975 A G SGSH Missense_Mutation p.V220A 0.31 deleterious(0) probably_damaging(0.977) TCGA-CH-5751-01 17 79094618 79094618 T C AATK Missense_Mutation p.R1040G 0.14 tolerated(0.39) benign(0) TCGA-CH-5751-01 18 32917272 32917272 T C ZNF24 Missense_Mutation p.Y344C 0.10 deleterious(0) probably_damaging(0.926) TCGA-CH-5751-01 19 15512380 15512380 C T AKAP8L Missense_Mutation p.V133I 0.19 tolerated(0.45) benign(0.001) TCGA-CH-5751-01 19 46543095 46543095 A G IGFL4 3'UTR 0.05 TCGA-CH-5751-01 1 115005788 115005788 G A TRIM33 Silent p.F287F 0.06 TCGA-CH-5751-01 1 145530284 145530284 G T ITGA10 Missense_Mutation p.D167Y 0.03 deleterious(0) probably_damaging(1) TCGA-CH-5751-01 1 157104016 157104017 - T ETV3 Nonsense_Mutation p.Y96* 0.39 TCGA-CH-5751-01 2 179426189 179426189 T G TTN Missense_Mutation p.M28224L 0.33 TCGA-CH-5751-01 3 111795794 111795794 C T TMPRSS7 Missense_Mutation p.P550L 0.35 tolerated(0.2) benign(0.04) TCGA-CH-5751-01 3 147128521 147128521 C A ZIC1 Missense_Mutation p.H208N 0.18 deleterious(0.03) probably_damaging(0.923) TCGA-CH-5751-01 3 152554551 152554551 C T P2RY1 Missense_Mutation p.A327V 0.04 deleterious(0.03) probably_damaging(0.986) TCGA-CH-5751-01 3 47361170 47361170 C T KLHL18 Missense_Mutation p.R53W 0.27 deleterious(0) probably_damaging(1) TCGA-CH-5751-01 3 48348452 48348452 C A SPINK8 3'UTR 0.16 TCGA-CH-5751-01 3 52366398 52366398 G A DNAH1 Missense_Mutation p.R425H 0.05 benign(0.009) TCGA-CH-5751-01 4 24801303 24801303 G A SOD3 Missense_Mutation p.D54N 0.62 tolerated(0.25) benign(0.016) TCGA-CH-5751-01 4 77818329 77818329 G A SOWAHB Missense_Mutation p.P225L 0.33 tolerated(0.08) possibly_damaging(0.726) TCGA-CH-5751-01 5 101834316 101834316 G A SLCO6A1 Missense_Mutation p.P78L 0.18 tolerated(0.55) benign(0.006) TCGA-CH-5751-01 5 140865886 140865886 C T PCDHGC4 Silent p.N382N 0.06 TCGA-CH-5751-01 5 79945228 79945232 TAAAT - DHFR Frame_Shift_Del p.N73Sfs*22 0.19 TCGA-CH-5751-01 6 142764680 142764680 C A GPR126 3'UTR 0.06 TCGA-CH-5751-01 6 24357720 24357720 C T DCDC2 Missense_Mutation p.V87M 0.27 deleterious(0) probably_damaging(0.99) TCGA-CH-5751-01 6 33377450 33377450 C T KIFC1 Nonsense_Mutation p.Q669* 0.13 TCGA-CH-5751-01 6 99323344 99323344 T G FBXL4 Missense_Mutation p.D550A 0.27 deleterious(0) possibly_damaging(0.524) TCGA-CH-5751-01 7 11150998 11150998 C G PHF14 Missense_Mutation p.C607W 0.10 tolerated(0.18) probably_damaging(0.964) TCGA-CH-5751-01 7 143400268 143400268 G A FAM115C Missense_Mutation p.V61M 0.21 deleterious(0.01) benign(0.328) TCGA-CH-5751-01 7 31377922 31377922 G A NEUROD6 Missense_Mutation p.R321C 0.05 deleterious(0) possibly_damaging(0.876) TCGA-CH-5751-01 7 33573723 33573723 T C BBS9 Missense_Mutation p.L819S 0.34 deleterious(0) probably_damaging(0.972) TCGA-CH-5751-01 7 86848787 86848787 G A TMEM243 Silent p.T11T 0.18 TCGA-CH-5751-01 8 144942667 144942667 C A EPPK1 Missense_Mutation p.M1585I 0.54 benign(0.266) TCGA-CH-5751-01 8 21768190 21768190 C T DOK2 Silent p.R204R 0.38 TCGA-CH-5751-01 X 73061256 73061256 C T XIST RNA 0.55 TCGA-CH-5752-01 10 1284215 1284215 G A ADARB2 Missense_Mutation p.T447M 0.11 deleterious(0.02) possibly_damaging(0.672) TCGA-CH-5752-01 10 17032435 17032435 C T CUBN Silent p.E1416E 0.08 TCGA-CH-5752-01 10 84745233 84745233 G A NRG3 Missense_Mutation p.V655I 0.44 tolerated_low_confidence(0.26) benign(0.03) TCGA-CH-5752-01 10 97916435 97916435 T G ZNF518A RNA 0.04 TCGA-CH-5752-01 11 118657025 118657025 T A DDX6 5'UTR 0.26 TCGA-CH-5752-01 11 124618255 124618255 C T VSIG2 Intron 0.40 TCGA-CH-5752-01 11 61111398 61111398 G A DAK Silent p.R351R 0.06 TCGA-CH-5752-01 11 92568131 92568131 G A FAT3 Missense_Mutation p.A3323T 0.50 benign(0.078) TCGA-CH-5752-01 12 113909233 113909233 G A LHX5 Missense_Mutation p.A24V 0.15 tolerated(0.09) benign(0.052) TCGA-CH-5752-01 12 125348169 125348169 G C SCARB1 Missense_Mutation p.P33R 0.15 deleterious(0) probably_damaging(0.997) TCGA-CH-5752-01 12 12870803 12870803 C - CDKN1B Frame_Shift_Del p.P11Lfs*31 0.26 TCGA-CH-5752-01 12 46246234 46246241 GTGGTACT - ARID2 Frame_Shift_Del p.S1443Rfs*4 0.25 TCGA-CH-5752-01 12 49420423 49420423 C A KMT2D Missense_Mutation p.C5109F 0.31 unknown(0) TCGA-CH-5752-01 13 20024290 20024290 A G TPTE2 Missense_Mutation p.F300S 0.05 deleterious(0) probably_damaging(0.994) TCGA-CH-5752-01 13 27649444 27649444 T A USP12 Silent p.T272T 0.39 TCGA-CH-5752-01 14 103918266 103918266 G A MARK3 Missense_Mutation p.E120K 0.07 deleterious(0) probably_damaging(1) TCGA-CH-5752-01 14 60591549 60591549 A G PCNXL4 Missense_Mutation p.D653G 0.03 deleterious(0.03) benign(0.32) TCGA-CH-5752-01 15 30025006 30025006 C A TJP1 Missense_Mutation p.A584S 0.45 tolerated(0.33) benign(0.083) TCGA-CH-5752-01 17 57679935 57679935 G A DHX40 Missense_Mutation p.R620Q 0.29 tolerated(0.16) possibly_damaging(0.522) TCGA-CH-5752-01 17 65688807 65688807 G A PITPNC1 Missense_Mutation p.V268I 0.17 tolerated(0.28) benign(0.001) TCGA-CH-5752-01 19 38976722 38976722 C A RYR1 Missense_Mutation p.D1809E 0.43 benign(0.316) TCGA-CH-5752-01 19 58863782 58863782 C T A1BG Silent p.E160E 0.06 TCGA-CH-5752-01 1 110256100 110256100 A G GSTM5 Intron 0.30 TCGA-CH-5752-01 1 145440347 145440347 G T TXNIP Missense_Mutation p.R218L 0.11 deleterious(0.02) benign(0.157) TCGA-CH-5752-01 1 168054595 168054595 T C GPR161 3'UTR 0.17 TCGA-CH-5752-01 1 172501831 172501831 C T SUCO 5'Flank 0.07 TCGA-CH-5752-01 1 235345029 235345029 T C ARID4B Missense_Mutation p.I1069V 0.36 tolerated(0.63) benign(0.004) TCGA-CH-5752-01 1 8921303 8921303 G A ENO1 3'UTR 0.19 TCGA-CH-5752-01 20 34389529 34389529 T G PHF20 Splice_Site p.X28_splice 0.05 TCGA-CH-5752-01 20 42826279 42826279 T C OSER1 Missense_Mutation p.I98V 0.11 tolerated(0.66) benign(0.084) TCGA-CH-5752-01 20 43926838 43926838 C T MATN4 Silent p.S466S 0.06 TCGA-CH-5752-01 20 62178595 62178595 G A SRMS Silent p.R74R 0.07 TCGA-CH-5752-01 22 39421246 39421246 C T APOBEC3D Silent p.L128L 0.06 TCGA-CH-5752-01 2 131096732 131096732 G C CCDC115 Silent p.L168L 0.09 TCGA-CH-5752-01 2 171862701 171862701 A G TLK1 Silent p.G620G 0.07 TCGA-CH-5752-01 2 188210853 188210853 G A CALCRL 3'UTR 0.26 TCGA-CH-5752-01 2 38976716 38976716 T A SRSF7 Missense_Mutation p.H114L 0.09 deleterious(0) probably_damaging(0.999) TCGA-CH-5752-01 2 56603059 56603059 C A CCDC85A Missense_Mutation p.H521N 0.34 tolerated_low_confidence(0.2) benign(0.001) TCGA-CH-5752-01 3 113508598 113508598 G T ATP6V1A Missense_Mutation p.G300V 0.32 deleterious(0) probably_damaging(0.992) TCGA-CH-5752-01 3 130159274 130159274 A T COL6A5 Missense_Mutation p.D2031V 0.30 tolerated(0.06) benign(0.104) TCGA-CH-5752-01 3 176755961 176755961 C G TBL1XR1 Splice_Site p.X350_splice 0.06 TCGA-CH-5752-01 3 184910384 184910384 G A EHHADH Missense_Mutation p.S601L 0.12 tolerated(0.28) benign(0.003) TCGA-CH-5752-01 3 45761023 45761023 A G SACM1L Silent p.G203G 0.07 TCGA-CH-5752-01 3 9870957 9870957 C A TTLL3 Missense_Mutation p.P621T 0.39 deleterious(0.01) possibly_damaging(0.561) TCGA-CH-5752-01 4 5837779 5837779 C T CRMP1 Missense_Mutation p.A496T 0.35 deleterious(0) probably_damaging(0.936) TCGA-CH-5752-01 5 177022271 177022271 C T TMED9 Nonsense_Mutation p.R188* 0.31 TCGA-CH-5752-01 5 79961132 79961132 G A MSH3 Missense_Mutation p.A177T 0.40 tolerated_low_confidence(0.11) benign(0.133) TCGA-CH-5752-01 5 9629679 9629679 G A TAS2R1 Silent p.L156L 0.05 TCGA-CH-5752-01 6 129601260 129601260 C T LAMA2 Silent p.C835C 0.05 TCGA-CH-5752-01 7 151814291 151814291 A G GALNT11 Missense_Mutation p.N428S 0.30 tolerated(0.06) benign(0.265) TCGA-CH-5752-01 7 151853293 151853293 C - KMT2C Frame_Shift_Del p.E3937Kfs*6 0.08 TCGA-CH-5752-01 7 151859486 151859487 - TT KMT2C Frame_Shift_Ins p.E3726Kfs*20 0.29 TCGA-CH-5752-01 7 151873437 151873437 G - KMT2C Frame_Shift_Del p.P3034Lfs*4 0.32 TCGA-CH-5752-01 7 87760838 87760838 A T ADAM22 Intron 0.28 TCGA-CH-5752-01 8 113236841 113236841 G T CSMD3 3'UTR 0.41 TCGA-CH-5752-01 8 120850633 120850638 CACCAG - DSCC1 In_Frame_Del p.L312_V313del 0.29 TCGA-CH-5752-01 8 145151373 145151373 A - CYC1 Frame_Shift_Del p.D196Afs*58 0.13 TCGA-CH-5752-01 9 114489999 114490000 - CCAAA C9orf84 Frame_Shift_Ins p.D519Vfs*5 0.10 TCGA-CH-5752-01 9 77448983 77448983 T G TRPM6 Missense_Mutation p.R200S 0.06 tolerated(0.07) benign(0.081) TCGA-CH-5752-01 X 91133056 91133056 C T PCDH11X Missense_Mutation p.T606M 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-CH-5753-01 10 37508619 37508619 C A ANKRD30A Missense_Mutation p.Q1271K 0.08 tolerated(0.78) benign(0.005) TCGA-CH-5753-01 11 105880177 105880177 G A MSANTD4 3'UTR 0.71 TCGA-CH-5753-01 11 12280080 12280080 G A MICAL2 Missense_Mutation p.A1070T 0.37 tolerated(0.09) benign(0.021) TCGA-CH-5753-01 11 30034072 30034072 C T KCNA4 Missense_Mutation p.E52K 0.42 tolerated_low_confidence(0.4) unknown(0) TCGA-CH-5753-01 11 46407006 46407006 G T CHRM4 Missense_Mutation p.R368S 0.09 tolerated(0.71) benign(0.018) TCGA-CH-5753-01 11 5172693 5172693 G A OR52A1 Missense_Mutation p.R303C 0.08 deleterious(0.02) benign(0.028) TCGA-CH-5753-01 11 55339695 55339695 G A OR4C16 Missense_Mutation p.R31H 0.38 deleterious(0.02) benign(0.008) TCGA-CH-5753-01 12 121132062 121132062 C A MLEC Missense_Mutation p.S135Y 0.29 deleterious(0) probably_damaging(0.976) TCGA-CH-5753-01 12 122396884 122396884 G C WDR66 Missense_Mutation p.V673L 0.36 deleterious(0.03) possibly_damaging(0.541) TCGA-CH-5753-01 14 24878180 24878180 C A NYNRIN Missense_Mutation p.Q394K 0.26 deleterious_low_confidence(0) benign(0.345) TCGA-CH-5753-01 14 80271470 80271470 C A NRXN3 Missense_Mutation p.L941I 0.04 tolerated(0.23) benign(0.004) TCGA-CH-5753-01 15 33835896 33835896 C T RYR3 Silent p.D240D 0.15 TCGA-CH-5753-01 15 43577105 43577105 C T TGM7 Missense_Mutation p.R304H 0.16 tolerated(0.21) benign(0.056) TCGA-CH-5753-01 15 43896963 43896963 G A STRC Nonsense_Mutation p.R1338* 0.45 TCGA-CH-5753-01 15 49036526 49036526 C T CEP152 Missense_Mutation p.G1249E 0.44 tolerated(0.1) probably_damaging(1) TCGA-CH-5753-01 15 62266506 62266506 G A VPS13C Missense_Mutation p.A840V 0.37 tolerated(0.55) benign(0.001) TCGA-CH-5753-01 15 89386657 89386657 G A ACAN Missense_Mutation p.G277S 0.24 deleterious(0) unknown(0) TCGA-CH-5753-01 16 2827129 2827129 C T TCEB2 Splice_Site p.X2_splice 0.47 TCGA-CH-5753-01 16 3190970 3190970 G A ZNF213 Silent p.R334R 0.12 TCGA-CH-5753-01 16 48121966 48121966 C T ABCC12 Missense_Mutation p.R1169H 0.45 deleterious(0.05) possibly_damaging(0.808) TCGA-CH-5753-01 16 67199716 67199716 C A HSF4 Silent p.G109G 0.22 TCGA-CH-5753-01 17 47121400 47121400 G - IGF2BP1 Frame_Shift_Del p.Q426Sfs*61 0.29 TCGA-CH-5753-01 17 60654069 60654069 G A TLK2 Splice_Site p.X374_splice 0.03 TCGA-CH-5753-01 18 2610828 2610828 G A NDC80 Missense_Mutation p.E587K 0.05 tolerated(0.09) benign(0.115) TCGA-CH-5753-01 18 57006162 57006162 C T LMAN1 Missense_Mutation p.G327R 0.19 tolerated(0.1) benign(0.347) TCGA-CH-5753-01 18 8825067 8825067 C A SOGA2 Missense_Mutation p.Q1187K 0.21 tolerated(1) benign(0.004) TCGA-CH-5753-01 19 22939861 22939861 G T ZNF99 3'Flank 0.41 TCGA-CH-5753-01 1 100327247 100327247 T C AGL Missense_Mutation p.F91L 0.25 deleterious(0.01) possibly_damaging(0.721) TCGA-CH-5753-01 1 116380707 116380707 G T NHLH2 Missense_Mutation p.A96D 0.18 deleterious(0) probably_damaging(0.99) TCGA-CH-5753-01 1 151751596 151751596 C G TDRKH Missense_Mutation p.E182Q 0.25 deleterious(0.04) probably_damaging(0.997) TCGA-CH-5753-01 1 156616762 156616762 G T BCAN Missense_Mutation p.E87D 0.07 deleterious(0.05) possibly_damaging(0.891) TCGA-CH-5753-01 1 179782917 179782917 T C FAM163A Missense_Mutation p.Y33H 0.11 deleterious(0) probably_damaging(1) TCGA-CH-5753-01 1 22207181 22207181 C A HSPG2 Missense_Mutation p.A656S 0.63 benign(0.007) TCGA-CH-5753-01 20 3557613 3557614 - CCC ATRN In_Frame_Ins p.P775dup 0.09 TCGA-CH-5753-01 20 44515342 44515342 G A SPATA25 Silent p.T166T 0.38 TCGA-CH-5753-01 22 24145587 24145587 C A SMARCB1 Missense_Mutation p.D202E 0.05 deleterious(0) probably_damaging(0.975) TCGA-CH-5753-01 2 125204422 125204422 C T CNTNAP5 Missense_Mutation p.R276W 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-CH-5753-01 2 141473656 141473656 G T LRP1B Missense_Mutation p.T1970K 0.06 possibly_damaging(0.728) TCGA-CH-5753-01 2 179498718 179498718 T - TTN Frame_Shift_Del p.M14170Cfs*3 0.35 TCGA-CH-5753-01 3 50879110 50879110 G A DOCK3 Nonsense_Mutation p.W42* 0.45 TCGA-CH-5753-01 4 122053645 122053645 C T TNIP3 3'UTR 0.41 TCGA-CH-5753-01 4 128814966 128814966 G A PLK4 Missense_Mutation p.R831K 0.03 tolerated(0.9) benign(0) TCGA-CH-5753-01 4 187197050 187197050 G T F11 Missense_Mutation p.A199S 0.28 deleterious(0.05) benign(0.267) TCGA-CH-5753-01 5 121356088 121356088 A - SRFBP1 Frame_Shift_Del p.K220Rfs*8 0.32 TCGA-CH-5753-01 5 54603876 54603876 T A SKIV2L2 Missense_Mutation p.V12E 0.16 deleterious(0.02) probably_damaging(0.963) TCGA-CH-5753-01 5 92923847 92923847 G A NR2F1 Missense_Mutation p.A230T 0.11 tolerated(0.25) probably_damaging(0.977) TCGA-CH-5753-01 6 71232237 71232237 T G FAM135A Missense_Mutation p.F351V 0.26 deleterious(0) possibly_damaging(0.902) TCGA-CH-5753-01 7 127013912 127013912 C T ZNF800 Missense_Mutation p.R493H 0.15 deleterious(0) probably_damaging(0.999) TCGA-CH-5753-01 7 97851719 97851719 C T TECPR1 Missense_Mutation p.V1015M 0.38 deleterious(0) probably_damaging(0.997) TCGA-CH-5753-01 7 98460809 98460809 G A TMEM130 Silent p.P100P 0.08 TCGA-CH-5753-01 8 113277665 113277665 C T CSMD3 Nonsense_Mutation p.W3221* 0.26 TCGA-CH-5753-01 8 11667248 11667248 G A FDFT1 Silent p.V90V 0.06 TCGA-CH-5753-01 8 22163488 22163488 G A PIWIL2 Missense_Mutation p.G502R 0.25 deleterious(0) probably_damaging(1) TCGA-CH-5753-01 8 48878815 48878815 G A MCM4 Missense_Mutation p.E301K 0.55 deleterious(0.04) possibly_damaging(0.492) TCGA-CH-5753-01 8 55372608 55372608 C G SOX17 3'UTR 0.56 TCGA-CH-5753-01 9 124751554 124751554 C A TTLL11 Missense_Mutation p.V487F 0.09 deleterious(0) benign(0.439) TCGA-CH-5753-01 9 139651558 139651558 C T LCN8 Silent p.P29P 0.07 TCGA-CH-5753-01 X 151138738 151138738 C T GABRE Missense_Mutation p.V65I 0.05 tolerated(0.19) benign(0.005) TCGA-CH-5754-01 10 22690118 22690118 A G SPAG6 Missense_Mutation p.Q409R 0.08 tolerated(0.06) benign(0.005) TCGA-CH-5754-01 10 48390797 48390797 C A RBP3 Silent p.L27L 0.26 TCGA-CH-5754-01 10 5948526 5948526 G A FBXO18 Silent p.P279P 0.23 TCGA-CH-5754-01 10 63212595 63212595 G T TMEM26 Intron 0.15 TCGA-CH-5754-01 10 97918959 97918959 G C ZNF518A RNA 0.17 TCGA-CH-5754-01 10 99655149 99655149 G A CRTAC1 Nonsense_Mutation p.R447* 0.31 TCGA-CH-5754-01 11 101832589 101832589 T C KIAA1377 Missense_Mutation p.S275P 0.32 tolerated(0.12) benign(0.081) TCGA-CH-5754-01 11 62462097 62462097 C G BSCL2 Missense_Mutation p.L191F 0.25 deleterious(0.01) possibly_damaging(0.908) TCGA-CH-5754-01 11 63656358 63656358 C G MARK2 Intron 0.12 TCGA-CH-5754-01 11 65487262 65487273 CGGGCACCTGTG - RNASEH2C In_Frame_Del p.A159_P162del 0.29 TCGA-CH-5754-01 11 67173158 67173158 G A TBC1D10C Silent p.S151S 0.31 TCGA-CH-5754-01 11 74421957 74421957 G T CHRDL2 Silent p.I123I 0.09 TCGA-CH-5754-01 11 77702308 77702308 G C INTS4 Missense_Mutation p.T31R 0.29 deleterious(0.01) benign(0.398) TCGA-CH-5754-01 11 7818051 7818051 C A OR5P2 Missense_Mutation p.A147S 0.24 tolerated(0.05) benign(0.023) TCGA-CH-5754-01 11 92570900 92570900 C T FAT3 Silent p.V3432V 0.31 TCGA-CH-5754-01 12 101473041 101473041 G C ANO4 Missense_Mutation p.W426C 0.28 deleterious(0) probably_damaging(0.952) TCGA-CH-5754-01 12 103981230 103981230 A C STAB2 5'UTR 0.11 TCGA-CH-5754-01 12 68720902 68720902 G A MDM1 Intron 0.29 TCGA-CH-5754-01 12 7053873 7053880 AGGGCGCC TT C12orf57 Intron 0.21 TCGA-CH-5754-01 12 8374854 8374854 A G FAM90A1 Missense_Mutation p.I320T 0.06 tolerated(0.49) benign(0) TCGA-CH-5754-01 13 114514745 114514745 C T TMEM255B Silent p.L284L 0.27 TCGA-CH-5754-01 13 32906912 32906912 A - BRCA2 Frame_Shift_Del p.N433Tfs*27 0.30 TCGA-CH-5754-01 14 23398392 23398392 T A PRMT5 Intron 0.30 TCGA-CH-5754-01 14 24885319 24885319 G C NYNRIN Missense_Mutation p.W1455S 0.37 tolerated_low_confidence(0.1) benign(0.007) TCGA-CH-5754-01 14 44976183 44976183 C A FSCB Missense_Mutation p.G3V 0.27 deleterious(0) possibly_damaging(0.583) TCGA-CH-5754-01 14 45639925 45639925 T G FANCM Silent p.S712S 0.33 TCGA-CH-5754-01 14 71514563 71514563 G A PCNX Silent p.L1400L 0.16 TCGA-CH-5754-01 14 74370665 74370665 G A ZNF410 Missense_Mutation p.E212K 0.27 deleterious(0.05) possibly_damaging(0.867) TCGA-CH-5754-01 14 77294750 77294750 C A C14orf166B Missense_Mutation p.L69M 0.23 deleterious(0) probably_damaging(0.996) TCGA-CH-5754-01 15 35185937 35185937 G A AQR Missense_Mutation p.A833V 0.33 deleterious(0) probably_damaging(0.98) TCGA-CH-5754-01 15 35185966 35185966 G C AQR Silent p.G823G 0.26 TCGA-CH-5754-01 15 35185970 35185970 A C AQR Missense_Mutation p.V822G 0.25 deleterious(0) probably_damaging(0.983) TCGA-CH-5754-01 15 43044437 43044437 G C TTBK2 Missense_Mutation p.L1003V 0.08 tolerated(0.13) benign(0.063) TCGA-CH-5754-01 15 54305247 54305247 G T UNC13C Missense_Mutation p.Q49H 0.35 tolerated_low_confidence(0.23) benign(0.002) TCGA-CH-5754-01 15 65623027 65623027 C G IGDCC3 Missense_Mutation p.Q538H 0.29 deleterious(0.02) possibly_damaging(0.838) TCGA-CH-5754-01 15 65890710 65890710 G C VWA9 Missense_Mutation p.P176A 0.31 tolerated(0.09) possibly_damaging(0.805) TCGA-CH-5754-01 15 75981610 75981610 G C CSPG4 Missense_Mutation p.S599C 0.12 deleterious(0.03) benign(0.289) TCGA-CH-5754-01 15 91016148 91016148 T A IQGAP1 Missense_Mutation p.L752Q 0.32 deleterious(0) probably_damaging(0.997) TCGA-CH-5754-01 16 1816093 1816093 G A MAPK8IP3 Missense_Mutation p.R859Q 0.09 tolerated(0.62) benign(0.009) TCGA-CH-5754-01 16 31498984 31498984 C G SLC5A2 Nonsense_Mutation p.Y263* 0.09 TCGA-CH-5754-01 16 31885211 31885211 G A ZNF267 5'UTR 0.20 TCGA-CH-5754-01 16 67405081 67405081 G C LRRC36 Missense_Mutation p.W477S 0.10 deleterious_low_confidence(0.02) benign(0.026) TCGA-CH-5754-01 16 70867982 70867982 C G HYDIN Missense_Mutation p.R4496P 0.44 probably_damaging(0.933) TCGA-CH-5754-01 16 84229837 84229837 G A ADAD2 Missense_Mutation p.A545T 0.42 tolerated(1) benign(0.002) TCGA-CH-5754-01 17 26851603 26851603 G A FOXN1 Missense_Mutation p.R69H 0.30 deleterious_low_confidence(0) benign(0.002) TCGA-CH-5754-01 17 26851604 26851604 C T FOXN1 Silent p.R69R 0.31 TCGA-CH-5754-01 17 38172080 38172080 A G CSF3 Silent p.A59A 0.11 TCGA-CH-5754-01 17 6930071 6930071 C G BCL6B Missense_Mutation p.P368A 0.07 deleterious(0.02) possibly_damaging(0.626) TCGA-CH-5754-01 17 79478427 79478427 C T ACTG1 Missense_Mutation p.G197S 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CH-5754-01 18 76754200 76754200 G A SALL3 Missense_Mutation p.V737M 0.56 deleterious(0.03) benign(0.411) TCGA-CH-5754-01 19 30935327 30935327 C T ZNF536 Silent p.R286R 0.31 TCGA-CH-5754-01 19 45858935 45858935 G A ERCC2 Missense_Mutation p.R511W 0.24 deleterious(0) probably_damaging(0.992) TCGA-CH-5754-01 19 50979132 50979132 G A FAM71E1 Silent p.D106D 0.22 TCGA-CH-5754-01 19 51322517 51322527 GGCTTATTGGG - KLK1 Frame_Shift_Del p.P238Ffs*? 0.12 TCGA-CH-5754-01 19 52538071 52538071 T A ZNF432 Missense_Mutation p.K287N 0.17 deleterious(0.01) possibly_damaging(0.852) TCGA-CH-5754-01 19 9071591 9071591 G T MUC16 Silent p.P5285P 0.25 TCGA-CH-5754-01 19 9071592 9071592 G T MUC16 Missense_Mutation p.P5285H 0.25 unknown(0) TCGA-CH-5754-01 1 10231330 10231330 G A UBE4B Silent p.T1156T 0.26 TCGA-CH-5754-01 1 108417620 108417620 A C VAV3 Missense_Mutation p.I75R 0.33 deleterious(0) probably_damaging(0.955) TCGA-CH-5754-01 1 12337950 12337950 T G VPS13D Missense_Mutation p.N1435K 0.33 probably_damaging(0.986) TCGA-CH-5754-01 1 174979201 174979201 G A CACYBP Missense_Mutation p.D225N 0.27 tolerated(0.05) benign(0.036) TCGA-CH-5754-01 1 179638343 179638343 T C TDRD5 Silent p.N888N 0.31 TCGA-CH-5754-01 1 197030932 197030932 T C F13B Missense_Mutation p.T145A 0.34 tolerated(0.34) benign(0.009) TCGA-CH-5754-01 1 202092294 202092294 C T GPR37L1 Missense_Mutation p.P68L 0.12 deleterious(0.03) probably_damaging(0.974) TCGA-CH-5754-01 1 23110993 23110993 C T EPHB2 Missense_Mutation p.R79W 0.38 tolerated(0.07) benign(0.005) TCGA-CH-5754-01 1 2419086 2419086 C A PLCH2 Nonsense_Mutation p.Y361* 0.07 TCGA-CH-5754-01 1 247587856 247587856 C A NLRP3 Missense_Mutation p.L371M 0.31 deleterious(0.02) probably_damaging(0.976) TCGA-CH-5754-01 1 41948239 41948239 A T EDN2 Missense_Mutation p.L81Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-CH-5754-01 1 92262994 92262994 A T TGFBR3 Silent p.P32P 0.30 TCGA-CH-5754-01 20 17716422 17716422 A C BANF2 Missense_Mutation p.H87P 0.30 tolerated(0.27) benign(0.01) TCGA-CH-5754-01 20 43374728 43374728 C T KCNK15 Silent p.Y59Y 0.18 TCGA-CH-5754-01 20 44979077 44979077 C A SLC35C2 Missense_Mutation p.D352Y 0.18 deleterious(0) benign(0.137) TCGA-CH-5754-01 21 10921956 10921956 G C TPTE Missense_Mutation p.S356C 0.14 tolerated(0.11) benign(0.033) TCGA-CH-5754-01 22 20458475 20458475 C T RIMBP3 Missense_Mutation p.G943R 0.18 tolerated(0.23) benign(0.067) TCGA-CH-5754-01 22 25246361 25246381 CCTGGACAAAATTGTGCATTA - SGSM1 In_Frame_Del p.D141_L147del 0.23 TCGA-CH-5754-01 22 46658215 46658215 G T PKDREJ Silent p.S335S 0.19 TCGA-CH-5754-01 2 108614336 108614336 C G SLC5A7 Missense_Mutation p.S164C 0.32 deleterious(0.04) possibly_damaging(0.496) TCGA-CH-5754-01 2 141259400 141259400 C T LRP1B Silent p.R2902R 0.30 TCGA-CH-5754-01 2 217279676 217279676 C G SMARCAL1 Missense_Mutation p.D83E 0.16 tolerated_low_confidence(0.31) benign(0.007) TCGA-CH-5754-01 2 219305571 219305571 C T VIL1 Missense_Mutation p.P786S 0.28 deleterious(0) probably_damaging(0.931) TCGA-CH-5754-01 2 220348803 220348803 C T SPEG Silent p.P2206P 0.41 TCGA-CH-5754-01 2 96970455 96970455 T G SNRNP200 Missense_Mutation p.E66A 0.29 tolerated(0.15) benign(0.297) TCGA-CH-5754-01 3 112642488 112642488 G A CD200R1 3'UTR 0.24 TCGA-CH-5754-01 3 132198111 132198111 T C DNAJC13 Missense_Mutation p.L917P 0.08 deleterious(0) probably_damaging(0.971) TCGA-CH-5754-01 3 134264447 134264447 A C CEP63 Missense_Mutation p.K192T 0.22 deleterious(0.03) probably_damaging(0.924) TCGA-CH-5754-01 3 151161667 151161667 C G IGSF10 Missense_Mutation p.D1690H 0.19 deleterious(0.01) possibly_damaging(0.863) TCGA-CH-5754-01 3 183894728 183894728 G A AP2M1 Intron 0.58 TCGA-CH-5754-01 3 184026525 184026525 G C PSMD2 Missense_Mutation p.K858N 0.20 deleterious(0.02) benign(0.059) TCGA-CH-5754-01 3 186971086 186971086 T G MASP1 Missense_Mutation p.K254N 0.27 tolerated(0.17) benign(0.003) TCGA-CH-5754-01 3 194126843 194126843 C T ATP13A3 Silent p.E1162E 0.09 TCGA-CH-5754-01 3 36524554 36524554 C T STAC Silent p.G153G 0.26 TCGA-CH-5754-01 3 38618225 38618225 G A SCN5A Silent p.N1146N 0.11 TCGA-CH-5754-01 3 38946767 38946767 G T SCN11A Missense_Mutation p.L507M 0.30 tolerated(0.49) benign(0.031) TCGA-CH-5754-01 3 81695585 81695585 G A GBE1 Missense_Mutation p.A247V 0.32 deleterious(0) probably_damaging(0.99) TCGA-CH-5754-01 4 162577600 162577600 A G FSTL5 Silent p.T258T 0.18 TCGA-CH-5754-01 4 77036593 77036593 C A NUP54 Missense_Mutation p.D484Y 0.32 deleterious(0) probably_damaging(0.983) TCGA-CH-5754-01 5 140166478 140166478 T A PCDHA1 Missense_Mutation p.D201E 0.08 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-CH-5754-01 5 180218578 180218578 G T MGAT1 3'UTR 0.32 TCGA-CH-5754-01 6 161969991 161969991 C A PARK2 Missense_Mutation p.Q326H 0.29 deleterious(0.04) benign(0.037) TCGA-CH-5754-01 6 28269738 28269738 G C PGBD1 Missense_Mutation p.G703R 0.09 deleterious(0.01) probably_damaging(1) TCGA-CH-5754-01 6 47976509 47976509 G C PTCHD4 Missense_Mutation p.D256E 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-CH-5754-01 6 56341001 56341001 T C DST Silent p.K4647K 0.15 TCGA-CH-5754-01 7 100775170 100775170 T C SERPINE1 Silent p.L174L 0.06 TCGA-CH-5754-01 7 100775172 100775172 G A SERPINE1 Silent p.L174L 0.06 TCGA-CH-5754-01 7 112555403 112555403 G C C7orf60 Missense_Mutation p.A87G 0.25 tolerated(0.49) benign(0.001) TCGA-CH-5754-01 7 135106938 135106938 A C CNOT4 Silent p.V113V 0.29 TCGA-CH-5754-01 7 143400452 143400452 C A FAM115C Missense_Mutation p.P122H 0.36 tolerated(0.08) possibly_damaging(0.792) TCGA-CH-5754-01 7 158557460 158557460 C G ESYT2 Missense_Mutation p.D385H 0.11 deleterious(0) probably_damaging(0.999) TCGA-CH-5754-01 7 28452471 28452471 G A CREB5 5'UTR 0.19 TCGA-CH-5754-01 7 99474214 99474214 G T OR2AE1 Nonsense_Mutation p.S148* 0.30 TCGA-CH-5754-01 8 102570788 102570788 C A GRHL2 Missense_Mutation p.S142R 0.22 tolerated(0.37) benign(0.056) TCGA-CH-5754-01 8 121554095 121554095 T A SNTB1 Silent p.G493G 0.05 TCGA-CH-5754-01 8 124219675 124219675 C T FAM83A Missense_Mutation p.A351V 0.15 tolerated(0.67) benign(0.001) TCGA-CH-5754-01 8 124350061 124350065 ACTTC - ATAD2 Splice_Site p.X952_splice 0.16 TCGA-CH-5754-01 8 144696809 144696809 A C TSTA3 Missense_Mutation p.I150S 0.18 deleterious(0.02) possibly_damaging(0.516) TCGA-CH-5754-01 8 69002823 69002823 C T PREX2 Missense_Mutation p.A708V 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-CH-5754-01 9 129595973 129595973 C T ZBTB43 Silent p.L395L 0.36 TCGA-CH-5754-01 9 32632549 32632549 G A TAF1L Missense_Mutation p.T1010I 0.32 deleterious(0) probably_damaging(0.999) TCGA-CH-5754-01 9 34257426 34257426 C T KIF24 Missense_Mutation p.A727T 0.30 tolerated(0.65) benign(0) TCGA-CH-5754-01 9 711931 711931 T C KANK1 Missense_Mutation p.S389P 0.24 tolerated(0.4) benign(0.001) TCGA-CH-5754-01 9 77562852 77562852 G C C9orf40 3'UTR 0.13 TCGA-CH-5754-01 X 47039694 47039694 C G RBM10 Silent p.A382A 0.68 TCGA-CH-5761-01 10 22022438 22022438 A - MLLT10 Frame_Shift_Del p.T805Lfs*5 0.35 TCGA-CH-5761-01 10 60148567 60148567 G A TFAM Missense_Mutation p.M143I 0.35 tolerated(0.94) benign(0) TCGA-CH-5761-01 11 125647403 125647403 C T PATE2 Missense_Mutation p.M72I 0.25 tolerated(0.11) benign(0.124) TCGA-CH-5761-01 11 46625305 46625305 A C HARBI1 Missense_Mutation p.D275E 0.31 deleterious(0.01) possibly_damaging(0.681) TCGA-CH-5761-01 11 64065643 64065643 C T KCNK4 Silent p.L241L 0.30 TCGA-CH-5761-01 11 86662613 86662613 G A FZD4 Silent p.L395L 0.04 TCGA-CH-5761-01 11 86662648 86662648 G A FZD4 Missense_Mutation p.L384F 0.06 tolerated(0.18) benign(0.392) TCGA-CH-5761-01 11 86663024 86663024 G A FZD4 Silent p.L258L 0.10 TCGA-CH-5761-01 12 101588917 101588917 C T SLC5A8 Missense_Mutation p.A165T 0.41 tolerated(0.07) benign(0.087) TCGA-CH-5761-01 14 101506035 101506035 G T MIR376C RNA 0.33 TCGA-CH-5761-01 14 63858555 63858555 T C PPP2R5E Missense_Mutation p.K312E 0.29 deleterious(0.01) possibly_damaging(0.755) TCGA-CH-5761-01 15 45695108 45695108 G A SPATA5L1 Missense_Mutation p.A161T 0.13 tolerated(0.38) benign(0.004) TCGA-CH-5761-01 15 45695158 45695158 G A SPATA5L1 Silent p.L177L 0.10 TCGA-CH-5761-01 15 45695169 45695169 G T SPATA5L1 Missense_Mutation p.R181L 0.11 deleterious(0.04) benign(0.051) TCGA-CH-5761-01 15 59564611 59564611 T G MYO1E Missense_Mutation p.H14P 0.32 deleterious(0.02) possibly_damaging(0.548) TCGA-CH-5761-01 16 11367307 11367307 G A PRM3 Missense_Mutation p.A49V 0.70 deleterious_low_confidence(0.03) benign(0.015) TCGA-CH-5761-01 16 46943652 46943652 C T GPT2 Silent p.I211I 0.60 TCGA-CH-5761-01 16 47189674 47189676 CTC TT ITFG1 Frame_Shift_Del p.R598Kfs*32 0.16 TCGA-CH-5761-01 16 47189690 47189690 C A ITFG1 Splice_Site p.X594_splice 0.33 TCGA-CH-5761-01 17 46622154 46622154 C G HOXB2 Silent p.S40S 0.08 TCGA-CH-5761-01 17 61909469 61909469 T G SMARCD2 3'UTR 0.33 TCGA-CH-5761-01 17 7131298 7131299 - G DVL2 Frame_Shift_Ins p.R367Pfs*3 0.25 TCGA-CH-5761-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.45 deleterious(0) probably_damaging(1) TCGA-CH-5761-01 18 61558743 61558743 C G SERPINB2 Missense_Mutation p.A22G 0.53 tolerated(0.14) benign(0.124) TCGA-CH-5761-01 19 41763458 41763458 G A AXL Missense_Mutation p.V753M 0.32 deleterious(0) probably_damaging(0.999) TCGA-CH-5761-01 19 46800328 46800328 C T HIF3A 5'UTR 0.44 TCGA-CH-5761-01 19 49994179 49994179 G A RPL13A Intron 0.04 TCGA-CH-5761-01 19 5787682 5787682 C T DUS3L Missense_Mutation p.C377Y 0.31 deleterious(0) probably_damaging(0.996) TCGA-CH-5761-01 1 146731533 146731533 G T CHD1L Missense_Mutation p.L179F 0.33 deleterious(0) probably_damaging(0.999) TCGA-CH-5761-01 1 196658588 196658588 C G CFH Missense_Mutation p.L335V 0.05 deleterious(0.01) probably_damaging(0.944) TCGA-CH-5761-01 1 207195634 207195634 C A C1orf116 Missense_Mutation p.S492I 0.07 deleterious(0) probably_damaging(0.99) TCGA-CH-5761-01 1 234556448 234556448 C T TARBP1 Silent p.Q1185Q 0.34 TCGA-CH-5761-01 1 63999825 63999825 A C EFCAB7 Missense_Mutation p.T248P 0.36 tolerated(0.1) benign(0.418) TCGA-CH-5761-01 1 97564128 97564128 T C DPYD Missense_Mutation p.I895V 0.34 tolerated(0.59) benign(0.001) TCGA-CH-5761-01 20 62172641 62172641 C G SRMS Missense_Mutation p.E396D 0.16 deleterious(0) probably_damaging(1) TCGA-CH-5761-01 2 10933278 10933278 G C PDIA6 Missense_Mutation p.Q133E 0.19 tolerated(0.46) benign(0.001) TCGA-CH-5761-01 2 135922225 135922225 G A RAB3GAP1 Missense_Mutation p.A890T 0.33 tolerated(0.05) benign(0.265) TCGA-CH-5761-01 2 153475624 153475624 C T FMNL2 Missense_Mutation p.P527S 0.33 benign(0.07) TCGA-CH-5761-01 2 212251657 212251657 C A ERBB4 Silent p.V1134V 0.31 TCGA-CH-5761-01 3 10268074 10268074 C T IRAK2 Missense_Mutation p.T410M 0.36 deleterious(0) probably_damaging(0.99) TCGA-CH-5761-01 3 142773862 142773862 C T U2SURP Missense_Mutation p.S951L 0.43 deleterious(0.05) unknown(0) TCGA-CH-5761-01 3 147130364 147130364 G A ZIC1 Missense_Mutation p.D348N 0.16 deleterious(0) probably_damaging(0.981) TCGA-CH-5761-01 3 147131375 147131375 G C ZIC1 3'UTR 0.19 TCGA-CH-5761-01 3 151545911 151545911 G T AADAC Missense_Mutation p.S384I 0.34 deleterious(0) benign(0.14) TCGA-CH-5761-01 3 2613235 2613235 C A CNTN4 Nonsense_Mutation p.C16* 0.37 TCGA-CH-5761-01 3 36874132 36874132 C T TRANK1 Silent p.L2270L 0.51 TCGA-CH-5761-01 3 50147121 50147121 G A RBM5 Silent p.P426P 0.28 TCGA-CH-5761-01 3 9482170 9482170 G A SETD5 Missense_Mutation p.E200K 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-CH-5761-01 3 9482199 9482199 G A SETD5 Silent p.R209R 0.25 TCGA-CH-5761-01 3 9482254 9482254 G A SETD5 Missense_Mutation p.D228N 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-CH-5761-01 3 9482262 9482262 G C SETD5 Missense_Mutation p.Q230H 0.29 deleterious(0) probably_damaging(0.995) TCGA-CH-5761-01 3 9482306 9482306 G A SETD5 Missense_Mutation p.G245D 0.25 tolerated(0.1) probably_damaging(0.958) TCGA-CH-5761-01 4 141317358 141317358 C T CLGN Missense_Mutation p.D296N 0.20 tolerated(0.08) possibly_damaging(0.766) TCGA-CH-5761-01 4 155507194 155507194 T G FGA Missense_Mutation p.K463Q 0.30 deleterious(0) probably_damaging(0.995) TCGA-CH-5761-01 4 57272694 57272694 G A PPAT Silent p.G123G 0.32 TCGA-CH-5761-01 4 62598777 62598777 C T LPHN3 Missense_Mutation p.R234W 0.27 deleterious(0) probably_damaging(1) TCGA-CH-5761-01 6 18258550 18258550 A C DEK Missense_Mutation p.F78V 0.23 tolerated(0.37) benign(0.098) TCGA-CH-5761-01 7 100350275 100350275 A G ZAN Silent p.K849K 0.35 TCGA-CH-5761-01 7 120381668 120381668 C A KCND2 Silent p.L453L 0.38 TCGA-CH-5761-01 7 141754596 141754596 C T MGAM Silent p.L1068L 0.58 TCGA-CH-5761-01 7 1538175 1538175 G A INTS1 Missense_Mutation p.A433V 0.42 tolerated(0.05) benign(0.193) TCGA-CH-5761-01 9 123805397 123805397 C T C5 Silent p.V102V 0.21 TCGA-CH-5761-01 9 128122940 128122940 C - GAPVD1 Frame_Shift_Del p.N1421Mfs*19 0.30 TCGA-CH-5761-01 9 140086590 140086590 G A TPRN Missense_Mutation p.R704C 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-CH-5761-01 X 100630266 100630266 C A BTK Missense_Mutation p.A3S 0.64 tolerated(0.93) benign(0) TCGA-CH-5761-01 X 152158951 152158951 T G PNMA5 Missense_Mutation p.S398R 0.62 tolerated(0.62) benign(0.003) TCGA-CH-5761-01 X 78426887 78426887 A G GPR174 Missense_Mutation p.D128G 0.68 tolerated(0.12) benign(0.328) TCGA-CH-5762-01 10 74034535 74034535 G A DDIT4 Silent p.L96L 0.09 TCGA-CH-5762-01 10 85933664 85933664 C G C10orf99 Missense_Mutation p.I19M 0.09 deleterious(0.01) unknown(0) TCGA-CH-5762-01 11 108170450 108170450 G C ATM Missense_Mutation p.G1672A 0.12 tolerated(0.09) benign(0.048) TCGA-CH-5762-01 11 43418961 43418961 G C TTC17 Missense_Mutation p.D280H 0.02 deleterious(0.01) probably_damaging(0.989) TCGA-CH-5762-01 11 66192368 66192368 C T NPAS4 Silent p.D669D 0.14 TCGA-CH-5762-01 11 66627358 66627358 A C LRFN4 Missense_Mutation p.T534P 0.19 deleterious(0) possibly_damaging(0.885) TCGA-CH-5762-01 11 77911274 77911274 C T USP35 Silent p.F344F 0.13 TCGA-CH-5762-01 12 11214315 11214315 T A TAS2R46 Silent p.I193I 0.13 TCGA-CH-5762-01 12 116457671 116457671 C T MED13L Silent p.P244P 0.28 TCGA-CH-5762-01 12 133428223 133428223 C T CHFR Silent p.P503P 0.16 TCGA-CH-5762-01 12 25264722 25264722 A C CASC1 Missense_Mutation p.V588G 0.03 deleterious(0) probably_damaging(0.995) TCGA-CH-5762-01 12 30818715 30818715 T A IPO8 Missense_Mutation p.K429M 0.15 tolerated(0.06) possibly_damaging(0.507) TCGA-CH-5762-01 12 30818751 30818751 T A IPO8 Missense_Mutation p.Y417F 0.18 tolerated(0.17) benign(0.125) TCGA-CH-5762-01 12 53201573 53201573 G A KRT4 Missense_Mutation p.R401C 0.18 deleterious(0) benign(0.016) TCGA-CH-5762-01 13 102250584 102250584 C T ITGBL1 Missense_Mutation p.T317M 0.18 tolerated(0.06) benign(0.001) TCGA-CH-5762-01 14 21250158 21250158 C T RNASE6 Silent p.N100N 0.03 TCGA-CH-5762-01 14 45584161 45584163 ATT - PRPF39 3'UTR 0.18 TCGA-CH-5762-01 14 45693191 45693191 G T MIS18BP1 Missense_Mutation p.P867T 0.04 tolerated(0.42) benign(0.034) TCGA-CH-5762-01 14 53513502 53513502 T C DDHD1 Missense_Mutation p.N896S 0.15 tolerated_low_confidence(0.86) benign(0.002) TCGA-CH-5762-01 14 59112942 59112942 A G DACT1 Missense_Mutation p.E534G 0.14 tolerated(0.06) possibly_damaging(0.628) TCGA-CH-5762-01 15 65502037 65502037 C A CILP Silent p.V19V 0.12 TCGA-CH-5762-01 15 66015198 66015198 G T DENND4A Missense_Mutation p.Q526K 0.08 deleterious(0.01) probably_damaging(0.967) TCGA-CH-5762-01 15 89868709 89868709 C T POLG Missense_Mutation p.E641K 0.06 tolerated(0.27) benign(0.005) TCGA-CH-5762-01 17 56603077 56603077 G C SEPT4 Missense_Mutation p.R188G 0.07 deleterious(0) probably_damaging(0.993) TCGA-CH-5762-01 17 7801306 7801307 - T CHD3 Frame_Shift_Ins p.Y706Lfs*13 0.12 TCGA-CH-5762-01 17 8013483 8013483 C A ALOXE3 Missense_Mutation p.C543F 0.06 tolerated(0.69) possibly_damaging(0.882) TCGA-CH-5762-01 18 64239269 64239269 G A CDH19 Missense_Mutation p.T58M 0.16 deleterious(0.03) possibly_damaging(0.494) TCGA-CH-5762-01 19 14015677 14015677 G A C19orf57 Missense_Mutation p.S10L 0.14 deleterious(0) benign(0.01) TCGA-CH-5762-01 19 19371864 19371864 C T HAPLN4 Missense_Mutation p.G81D 0.14 tolerated(0.51) benign(0.294) TCGA-CH-5762-01 19 38895746 38895746 A T FAM98C Missense_Mutation p.H183L 0.18 deleterious(0.01) possibly_damaging(0.87) TCGA-CH-5762-01 19 57723318 57723326 AAGCCTTAC - ZNF264 In_Frame_Del p.P286_K288del 0.23 TCGA-CH-5762-01 19 9074121 9074121 G C MUC16 Missense_Mutation p.T4442R 0.06 unknown(0) TCGA-CH-5762-01 1 10292482 10292482 C T KIF1B Silent p.G32G 0.16 TCGA-CH-5762-01 1 104202996 104202996 G T AMY1A Missense_Mutation p.G298V 0.18 deleterious(0.02) probably_damaging(0.957) TCGA-CH-5762-01 1 110217403 110217403 G T GSTM2 Missense_Mutation p.S201I 0.13 deleterious(0.02) benign(0.414) TCGA-CH-5762-01 1 110217413 110217413 C G GSTM2 Silent p.L204L 0.13 TCGA-CH-5762-01 1 11090302 11090302 A T MASP2 Missense_Mutation p.Y410N 0.13 deleterious(0) probably_damaging(0.999) TCGA-CH-5762-01 1 1148405 1148405 T G TNFRSF4 Missense_Mutation p.T113P 0.12 deleterious(0.03) probably_damaging(0.936) TCGA-CH-5762-01 1 45923458 45923458 A C TESK2 5'UTR 0.11 TCGA-CH-5762-01 20 17475376 17475376 C A BFSP1 Missense_Mutation p.K447N 0.14 deleterious(0) benign(0.081) TCGA-CH-5762-01 20 54573540 54573541 - A CBLN4 3'UTR 0.16 TCGA-CH-5762-01 20 55948566 55948566 C G RAE1 Missense_Mutation p.N226K 0.11 tolerated(0.5) benign(0.002) TCGA-CH-5762-01 20 62121900 62121900 G A EEF1A2 Missense_Mutation p.R321W 0.06 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-CH-5762-01 22 26884148 26884148 G C SRRD Missense_Mutation p.G135A 0.20 tolerated(0.13) benign(0.437) TCGA-CH-5762-01 22 31667167 31667167 C A LIMK2 Missense_Mutation p.H434N 0.15 tolerated(0.1) benign(0.196) TCGA-CH-5762-01 2 101591316 101591316 G A NPAS2 Missense_Mutation p.G398S 0.17 tolerated(0.38) benign(0.064) TCGA-CH-5762-01 2 113420507 113420507 A - SLC20A1 Frame_Shift_Del p.N649Tfs*35 0.18 TCGA-CH-5762-01 2 160710869 160710869 A T LY75-CD302 Splice_Site p.X865_splice 0.06 TCGA-CH-5762-01 2 173349859 173349859 G C ITGA6 Missense_Mutation p.R574T 0.03 deleterious(0) possibly_damaging(0.559) TCGA-CH-5762-01 2 175300751 175300754 TTGC - GPR155 3'UTR 0.14 TCGA-CH-5762-01 2 203661648 203661648 T A ICA1L Missense_Mutation p.E317V 0.11 tolerated(0.24) benign(0.241) TCGA-CH-5762-01 2 208632596 208632596 C G FZD5 Missense_Mutation p.V290L 0.17 tolerated(0.53) benign(0.03) TCGA-CH-5762-01 2 220396490 220396490 G A ASIC4 Missense_Mutation p.R325H 0.03 deleterious(0.04) benign(0.369) TCGA-CH-5762-01 2 220396491 220396491 C T ASIC4 Silent p.R325R 0.03 TCGA-CH-5762-01 2 241556456 241556456 A G GPR35 Intron 0.21 TCGA-CH-5762-01 2 26671662 26671662 T C DRC1 Silent p.C500C 0.03 TCGA-CH-5762-01 2 74666743 74666743 C T RTKN Intron 0.18 TCGA-CH-5762-01 2 88870483 88870483 T A EIF2AK3 Missense_Mutation p.D965V 0.13 deleterious(0.01) benign(0.048) TCGA-CH-5762-01 3 57488129 57488129 C T DNAH12 Silent p.V388V 0.17 TCGA-CH-5762-01 4 174309467 174309467 T A SCRG1 3'UTR 0.13 TCGA-CH-5762-01 4 187629931 187629931 T C FAT1 Missense_Mutation p.K351E 0.16 benign(0.011) TCGA-CH-5762-01 4 85569912 85569912 T A CDS1 3'UTR 0.08 TCGA-CH-5762-01 4 87671632 87671632 C T PTPN13 Missense_Mutation p.S887L 0.03 tolerated(0.13) probably_damaging(0.981) TCGA-CH-5762-01 4 90170165 90170165 C T GPRIN3 Missense_Mutation p.G366E 0.17 deleterious(0.01) possibly_damaging(0.898) TCGA-CH-5762-01 6 13364916 13364916 T G GFOD1 3'UTR 0.08 TCGA-CH-5762-01 6 47650245 47650245 G A GPR111 Silent p.K650K 0.06 TCGA-CH-5762-01 6 84649905 84649905 G C CYB5R4 Missense_Mutation p.L413F 0.16 deleterious(0) probably_damaging(0.993) TCGA-CH-5762-01 7 127235734 127235734 C G FSCN3 Missense_Mutation p.P173R 0.16 deleterious(0) probably_damaging(0.996) TCGA-CH-5762-01 7 150754948 150754948 G A CDK5 5'UTR 0.15 TCGA-CH-5762-01 7 150774309 150774309 C T FASTK Missense_Mutation p.A436T 0.13 deleterious(0.01) benign(0.183) TCGA-CH-5762-01 7 30102304 30102304 A C PLEKHA8 Missense_Mutation p.K416Q 0.11 tolerated(0.09) probably_damaging(0.965) TCGA-CH-5762-01 7 31862740 31862740 C G PDE1C Missense_Mutation p.W570S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CH-5762-01 7 80432076 80432076 C G SEMA3C Missense_Mutation p.R274P 0.04 deleterious(0.02) probably_damaging(0.996) TCGA-CH-5762-01 7 86539226 86539226 C T KIAA1324L Missense_Mutation p.G754E 0.14 tolerated(1) benign(0.003) TCGA-CH-5762-01 7 86541390 86541390 C T KIAA1324L Missense_Mutation p.E723K 0.04 tolerated(0.19) benign(0.02) TCGA-CH-5762-01 8 101589258 101589258 G A SNX31 Nonsense_Mutation p.Q406* 0.13 TCGA-CH-5762-01 8 108348408 108348408 T - ANGPT1 Frame_Shift_Del p.N182Mfs*4 0.08 TCGA-CH-5762-01 8 145541933 145541933 C T DGAT1 Missense_Mutation p.A223T 0.12 tolerated(0.39) benign(0.014) TCGA-CH-5762-01 8 29207816 29207816 G A DUSP4 5'UTR 0.11 TCGA-CH-5762-01 8 72936093 72936099 ATTTGGT - TRPA1 Frame_Shift_Del p.I1033Mfs*6 0.13 TCGA-CH-5762-01 8 76456145 76456145 C A HNF4G Missense_Mutation p.A63E 0.18 deleterious(0) probably_damaging(0.997) TCGA-CH-5762-01 8 90802606 90802606 T C RIPK2 Missense_Mutation p.S529P 0.06 tolerated_low_confidence(0.21) benign(0.001) TCGA-CH-5762-01 8 93017401 93017401 T C RUNX1T1 Missense_Mutation p.D239G 0.04 deleterious(0) possibly_damaging(0.715) TCGA-CH-5762-01 9 14823308 14823308 C A FREM1 Missense_Mutation p.M729I 0.17 deleterious(0.01) benign(0.127) TCGA-CH-5762-01 9 75357381 75357381 G A TMC1 Missense_Mutation p.D159N 0.15 tolerated(0.24) probably_damaging(0.979) TCGA-CH-5762-01 9 95784668 95784668 A C FGD3 Silent p.A518A 0.11 TCGA-CH-5762-01 X 5821237 5821237 G C NLGN4X Silent p.P494P 0.13 TCGA-CH-5763-01 10 26855933 26855933 C T APBB1IP Missense_Mutation p.P506L 0.13 deleterious(0.05) benign(0.006) TCGA-CH-5763-01 11 113295366 113295366 G A DRD2 Missense_Mutation p.P3L 0.04 tolerated_low_confidence(0.48) benign(0.001) TCGA-CH-5763-01 11 5529391 5529391 T C UBQLN3 Silent p.A466A 0.04 TCGA-CH-5763-01 11 5632424 5632424 A G TRIM6 Missense_Mutation p.E468G 0.04 deleterious(0.02) possibly_damaging(0.623) TCGA-CH-5763-01 11 58126475 58126475 A C OR5B17 Missense_Mutation p.V23G 0.06 deleterious_low_confidence(0.04) benign(0.019) TCGA-CH-5763-01 12 116446661 116446661 C A MED13L Silent p.V519V 0.07 TCGA-CH-5763-01 12 133197607 133197607 T C P2RX2 Silent p.I265I 0.05 TCGA-CH-5763-01 12 59267899 59267899 G A LRIG3 Missense_Mutation p.S1018F 0.05 deleterious_low_confidence(0.02) benign(0.129) TCGA-CH-5763-01 12 7248981 7248981 C A C1RL 3'UTR 0.04 TCGA-CH-5763-01 14 96909069 96909069 G A AK7 Missense_Mutation p.M231I 0.03 tolerated(0.29) benign(0.001) TCGA-CH-5763-01 17 42293143 42293143 G A UBTF Missense_Mutation p.P118L 0.04 deleterious(0) probably_damaging(0.997) TCGA-CH-5763-01 17 78188012 78188012 G T SGSH Missense_Mutation p.P208T 0.11 deleterious(0.03) possibly_damaging(0.718) TCGA-CH-5763-01 19 11892189 11892189 C T ZNF441 Missense_Mutation p.S517L 0.05 tolerated(0.44) benign(0.246) TCGA-CH-5763-01 22 19838698 19838698 C G C22orf29 Missense_Mutation p.G363R 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.595) TCGA-CH-5763-01 22 21322168 21322168 G A AIFM3 5'UTR 0.12 TCGA-CH-5763-01 2 183846059 183846059 A G NCKAP1 Silent p.H424H 0.06 TCGA-CH-5763-01 2 223168894 223168894 G C CCDC140 Missense_Mutation p.K91N 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-CH-5763-01 3 187447376 187447376 T C BCL6 Missense_Mutation p.M273V 0.05 tolerated(0.42) benign(0) TCGA-CH-5763-01 4 166981195 166981195 T C TLL1 Missense_Mutation p.L621P 0.04 tolerated(0.07) possibly_damaging(0.884) TCGA-CH-5763-01 5 121739540 121739540 C T SNCAIP Missense_Mutation p.T37M 0.07 deleterious(0.03) benign(0.24) TCGA-CH-5763-01 6 32037587 32037587 C T TNXB Missense_Mutation p.R1777H 0.06 probably_damaging(0.995) TCGA-CH-5763-01 6 39832798 39832798 A G DAAM2 Missense_Mutation p.R126G 0.11 deleterious(0.04) possibly_damaging(0.532) TCGA-CH-5763-01 7 32957139 32957139 T C RP9P RNA 0.06 TCGA-CH-5763-01 9 131503068 131503068 C T ZER1 Silent p.Q612Q 0.05 TCGA-CH-5764-01 11 56043514 56043514 C A OR5T1 Missense_Mutation p.R134S 0.09 deleterious(0) possibly_damaging(0.879) TCGA-CH-5764-01 11 61630459 61630459 G A FADS2 Missense_Mutation p.V300I 0.30 tolerated(1) benign(0.001) TCGA-CH-5764-01 12 54971306 54971306 C T PPP1R1A 3'Flank 0.04 TCGA-CH-5764-01 12 64173824 64173824 C T TMEM5 Silent p.F28F 0.08 TCGA-CH-5764-01 13 32912796 32912796 A C BRCA2 Missense_Mutation p.N1435T 0.10 deleterious(0) probably_damaging(0.967) TCGA-CH-5764-01 14 38724734 38724734 C A CLEC14A Missense_Mutation p.R165L 0.28 tolerated(0.05) probably_damaging(0.986) TCGA-CH-5764-01 14 68113409 68113409 G C ARG2 Missense_Mutation p.A191P 0.03 tolerated(0.4) benign(0.001) TCGA-CH-5764-01 14 93814475 93814475 T C COX8C 3'UTR 0.32 TCGA-CH-5764-01 16 30991347 30991347 G A SETD1A Missense_Mutation p.A1414T 0.33 unknown(0) TCGA-CH-5764-01 18 67614065 67614065 C G CD226 Missense_Mutation p.R96P 0.32 tolerated(0.18) possibly_damaging(0.701) TCGA-CH-5764-01 19 2210728 2210728 C T DOT1L Missense_Mutation p.R409C 0.07 deleterious(0) probably_damaging(0.995) TCGA-CH-5764-01 19 46973938 46973938 G A PNMAL1 Missense_Mutation p.R119C 0.13 deleterious(0) possibly_damaging(0.835) TCGA-CH-5764-01 19 56701513 56701513 G A ZSCAN5B Missense_Mutation p.R391C 0.07 tolerated(0.13) benign(0.059) TCGA-CH-5764-01 1 109241909 109241909 G A PRPF38B Missense_Mutation p.R303Q 0.13 deleterious(0.01) unknown(0) TCGA-CH-5764-01 1 12090150 12090150 T G MIIP Missense_Mutation p.F304C 0.25 deleterious(0) probably_damaging(0.986) TCGA-CH-5764-01 1 158590009 158590009 G T SPTA1 Missense_Mutation p.T2123K 0.11 deleterious(0) probably_damaging(0.92) TCGA-CH-5764-01 1 16257158 16257158 C T SPEN Nonsense_Mutation p.R1475* 0.06 TCGA-CH-5764-01 1 227152757 227152757 G A ADCK3 Silent p.E78E 0.09 TCGA-CH-5764-01 1 51826841 51826841 A G EPS15 Splice_Site p.X848_splice 0.23 TCGA-CH-5764-01 20 3678583 3678583 G A SIGLEC1 Missense_Mutation p.R662C 0.09 deleterious(0) probably_damaging(0.992) TCGA-CH-5764-01 22 19467485 19467485 C A CDC45 5'UTR 0.08 TCGA-CH-5764-01 22 20937203 20937203 C T MED15 Missense_Mutation p.R496W 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-CH-5764-01 2 210658516 210658516 C T UNC80 Nonsense_Mutation p.R291* 0.24 TCGA-CH-5764-01 2 97464910 97464910 C A CNNM4 Missense_Mutation p.H600N 0.07 tolerated(0.08) benign(0.022) TCGA-CH-5764-01 3 148458896 148458896 A C AGTR1 Missense_Mutation p.N25T 0.12 tolerated(0.22) benign(0.001) TCGA-CH-5764-01 3 180381743 180381743 A - CCDC39 Frame_Shift_Del p.L41Cfs*15 0.19 TCGA-CH-5764-01 3 46755773 46755773 G A PRSS50 Missense_Mutation p.T230M 0.08 tolerated(0.12) benign(0.021) TCGA-CH-5764-01 4 79458218 79458218 T A FRAS1 Missense_Mutation p.L3721Q 0.12 probably_damaging(0.999) TCGA-CH-5764-01 5 137485406 137485406 G A BRD8 Silent p.G1067G 0.09 TCGA-CH-5764-01 6 50740431 50740431 A G TFAP2D Missense_Mutation p.M405V 0.25 tolerated(0.12) benign(0.417) TCGA-CH-5764-01 6 54735045 54735045 A T FAM83B Translation_Start_Site p.M1? 0.10 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CH-5764-01 6 63990299 63990299 T C LGSN Missense_Mutation p.Y386C 0.30 tolerated(0.22) benign(0.033) TCGA-CH-5764-01 6 7845502 7845502 G A BMP6 Missense_Mutation p.G265E 0.07 tolerated(0.8) benign(0.317) TCGA-CH-5764-01 7 141727465 141727465 G A MGAM Missense_Mutation p.R384H 0.09 deleterious(0.01) probably_damaging(1) TCGA-CH-5764-01 7 99795408 99795408 A T STAG3 Missense_Mutation p.E358V 0.05 deleterious(0) possibly_damaging(0.85) TCGA-CH-5764-01 8 95140541 95140541 C T CDH17 Missense_Mutation p.R809H 0.27 tolerated(0.29) benign(0.027) TCGA-CH-5764-01 9 100995790 100995790 C T TBC1D2 Missense_Mutation p.G230E 0.09 tolerated(0.21) benign(0.382) TCGA-CH-5764-01 9 117852969 117852969 G T TNC Missense_Mutation p.A110D 0.10 deleterious(0) probably_damaging(0.98) TCGA-CH-5764-01 9 27949564 27949564 C T LINGO2 Missense_Mutation p.R369Q 0.17 deleterious(0) benign(0.312) TCGA-CH-5764-01 9 74485071 74485071 G A ABHD17B Missense_Mutation p.S192F 0.24 deleterious(0) probably_damaging(0.988) TCGA-CH-5765-01 10 97192297 97192297 G A SORBS1 Missense_Mutation p.A70V 0.33 tolerated_low_confidence(0.06) benign(0.245) TCGA-CH-5765-01 11 4825344 4825344 C A OR52R1 Missense_Mutation p.W89C 0.35 deleterious(0) probably_damaging(0.999) TCGA-CH-5765-01 11 59608634 59608634 A G GIF Silent p.S225S 0.35 TCGA-CH-5765-01 12 121437365 121437365 C T HNF1A Missense_Mutation p.P568L 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.467) TCGA-CH-5765-01 12 122825728 122825728 C A CLIP1 Nonsense_Mutation p.E675* 0.36 TCGA-CH-5765-01 12 12630584 12630584 T C DUSP16 Missense_Mutation p.N394S 0.36 tolerated(0.26) benign(0.003) TCGA-CH-5765-01 12 88442916 88442916 T C C12orf29 3'UTR 0.41 TCGA-CH-5765-01 13 115090481 115090481 G A CHAMP1 Silent p.E388E 0.05 TCGA-CH-5765-01 13 29599666 29599666 C T MTUS2 Silent p.S287S 0.33 TCGA-CH-5765-01 14 23828655 23828655 C T EFS Silent p.L344L 0.33 TCGA-CH-5765-01 14 26917261 26917261 T C NOVA1 Silent p.G476G 0.36 TCGA-CH-5765-01 14 96848763 96848763 C T GSKIP Missense_Mutation p.A60V 0.40 tolerated(0.11) benign(0.02) TCGA-CH-5765-01 16 2506607 2506607 C T CCNF Silent p.C649C 0.37 TCGA-CH-5765-01 16 70363960 70363960 A G DDX19B Missense_Mutation p.I338V 0.06 tolerated(0.13) benign(0.005) TCGA-CH-5765-01 17 73897875 73897875 C T MRPL38 Missense_Mutation p.R170Q 0.36 tolerated(0.39) benign(0.051) TCGA-CH-5765-01 18 19153404 19153406 ATC - ESCO1 In_Frame_Del p.D467del 0.36 TCGA-CH-5765-01 18 72228208 72228208 G A CNDP1 Missense_Mutation p.G141S 0.38 tolerated(0.16) benign(0.002) TCGA-CH-5765-01 19 33603475 33603475 C A GPATCH1 Missense_Mutation p.D616E 0.32 tolerated(0.2) benign(0.026) TCGA-CH-5765-01 19 44564709 44564709 G A ZNF223 Silent p.E39E 0.34 TCGA-CH-5765-01 19 49536262 49536262 C T CGB2 Silent p.R92R 0.26 TCGA-CH-5765-01 1 1341203 1341203 C A MRPL20 Missense_Mutation p.G88W 0.04 deleterious(0.02) possibly_damaging(0.836) TCGA-CH-5765-01 1 152284306 152284306 G A FLG Missense_Mutation p.A1019V 0.33 benign(0.127) TCGA-CH-5765-01 1 157504477 157504477 T C FCRL5 Silent p.S536S 0.36 TCGA-CH-5765-01 1 186295344 186295344 A T TPR Missense_Mutation p.D1971E 0.35 benign(0.002) TCGA-CH-5765-01 1 216052411 216052411 G A USH2A Silent p.N2751N 0.35 TCGA-CH-5765-01 1 43296646 43296646 C T ERMAP Missense_Mutation p.T98M 0.33 deleterious(0) probably_damaging(0.994) TCGA-CH-5765-01 20 10026343 10026343 G A ANKEF1 Missense_Mutation p.R273Q 0.28 deleterious(0) probably_damaging(0.96) TCGA-CH-5765-01 20 40162157 40162157 T C CHD6 Missense_Mutation p.N29S 0.43 tolerated_low_confidence(0.49) benign(0.001) TCGA-CH-5765-01 21 47918685 47918685 A T DIP2A Silent p.A198A 0.33 TCGA-CH-5765-01 2 191922752 191922752 G A STAT4 Nonsense_Mutation p.R400* 0.36 TCGA-CH-5765-01 2 242793207 242793207 C T PDCD1 3'UTR 0.35 TCGA-CH-5765-01 2 39088318 39088318 T C DHX57 Missense_Mutation p.I412V 0.42 tolerated(0.53) benign(0.054) TCGA-CH-5765-01 2 74666767 74666767 C G RTKN Intron 0.31 TCGA-CH-5765-01 2 97216444 97216444 G A ARID5A Missense_Mutation p.A182T 0.60 tolerated(0.37) benign(0.043) TCGA-CH-5765-01 3 169497118 169497118 A G MYNN Missense_Mutation p.I277V 0.31 tolerated(0.86) benign(0.015) TCGA-CH-5765-01 4 122063932 122063932 C A TNIP3 Splice_Site p.X323_splice 0.17 TCGA-CH-5765-01 5 127595146 127595146 G T FBN2 3'UTR 0.17 TCGA-CH-5765-01 5 140515710 140515710 G A PCDHB5 Missense_Mutation p.V232I 0.07 tolerated_low_confidence(0.15) benign(0.152) TCGA-CH-5765-01 5 76709105 76709105 G A PDE8B Missense_Mutation p.A628T 0.18 deleterious(0) probably_damaging(0.995) TCGA-CH-5765-01 5 80626095 80626096 - T ACOT12 3'UTR 0.27 TCGA-CH-5765-01 7 107834822 107834822 T A NRCAM Missense_Mutation p.H505L 0.34 deleterious(0.03) probably_damaging(0.925) TCGA-CH-5765-01 8 131792813 131792813 G A ADCY8 Silent p.A1193A 0.39 TCGA-CH-5765-01 9 93637062 93637062 C T SYK Missense_Mutation p.T371M 0.04 tolerated(0.26) possibly_damaging(0.802) TCGA-CH-5766-01 11 1904667 1904667 C T LSP1 Silent p.Y253Y 0.21 TCGA-CH-5766-01 11 88068245 88068245 G C CTSC Missense_Mutation p.Q60E 0.10 tolerated(1) benign(0) TCGA-CH-5766-01 12 3390977 3390977 C T TSPAN9 Silent p.I214I 0.40 TCGA-CH-5766-01 12 97137249 97137249 C T C12orf55 Missense_Mutation p.T2430M 0.09 tolerated(0.11) benign(0.002) TCGA-CH-5766-01 13 111294811 111294811 G A CARS2 Missense_Mutation p.R492W 0.13 deleterious(0) possibly_damaging(0.772) TCGA-CH-5766-01 14 22471681 22471681 G A TRAV18 Missense_Mutation p.R35K 0.06 tolerated(0.16) benign(0.002) TCGA-CH-5766-01 14 61115426 61115426 G C SIX1 Missense_Mutation p.T161S 0.06 deleterious(0.01) probably_damaging(0.954) TCGA-CH-5766-01 14 64580250 64580250 C T SYNE2 Silent p.D4267D 0.37 TCGA-CH-5766-01 14 79746628 79746628 G T NRXN3 Intron 0.12 TCGA-CH-5766-01 17 41956753 41956753 T C MPP2 Missense_Mutation p.T458A 0.06 deleterious(0) possibly_damaging(0.578) TCGA-CH-5766-01 18 33836994 33836994 A T MOCOS Missense_Mutation p.N743I 0.24 deleterious(0) probably_damaging(0.977) TCGA-CH-5766-01 18 9221994 9221994 A G ANKRD12 Missense_Mutation p.T314A 0.08 deleterious(0.02) benign(0.403) TCGA-CH-5766-01 19 15132676 15132676 G A CCDC105 Missense_Mutation p.R399H 0.28 deleterious(0) probably_damaging(0.984) TCGA-CH-5766-01 19 41062020 41062020 G A SPTBN4 Silent p.V1705V 0.09 TCGA-CH-5766-01 1 109637041 109637041 G T TMEM167B Missense_Mutation p.A49S 0.12 tolerated(0.25) benign(0.013) TCGA-CH-5766-01 1 24083516 24083516 G T TCEB3 Nonsense_Mutation p.E746* 0.05 TCGA-CH-5766-01 1 245849237 245849237 C A KIF26B Silent p.S984S 0.11 TCGA-CH-5766-01 1 34102104 34102104 G A CSMD2 Missense_Mutation p.R1569W 0.09 deleterious(0) probably_damaging(0.998) TCGA-CH-5766-01 1 35227163 35227163 G A GJB4 Missense_Mutation p.R103H 0.05 deleterious(0.02) possibly_damaging(0.816) TCGA-CH-5766-01 1 41218877 41218877 G A NFYC Missense_Mutation p.D116N 0.20 deleterious(0) probably_damaging(0.993) TCGA-CH-5766-01 21 37586800 37586800 G A DOPEY2 Missense_Mutation p.A359T 0.11 tolerated(0.26) benign(0.008) TCGA-CH-5766-01 2 167262940 167262940 T C SCN7A Missense_Mutation p.Y1400C 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-CH-5766-01 2 179406214 179406214 T A TTN Missense_Mutation p.Q32530H 0.27 TCGA-CH-5766-01 2 179604912 179604912 C G TTN Missense_Mutation p.V4350L 0.10 TCGA-CH-5766-01 2 207425911 207425911 G A ADAM23 Missense_Mutation p.R410H 0.27 deleterious(0.05) benign(0.004) TCGA-CH-5766-01 3 134911533 134911533 G C EPHB1 Silent p.L666L 0.07 TCGA-CH-5766-01 3 13542247 13542247 C T HDAC11 Silent p.G149G 0.31 TCGA-CH-5766-01 3 38135139 38135139 T C DLEC1 Silent p.G600G 0.22 TCGA-CH-5766-01 3 63996409 63996409 T G PSMD6 Missense_Mutation p.T369P 0.12 deleterious(0.01) benign(0.372) TCGA-CH-5766-01 4 146058804 146058804 C A OTUD4 Missense_Mutation p.Q976H 0.11 tolerated(0.05) probably_damaging(0.982) TCGA-CH-5766-01 5 139744179 139744179 C T SLC4A9 Silent p.Y564Y 0.23 TCGA-CH-5766-01 5 74016258 74016259 - AGA HEXB In_Frame_Ins p.K476dup 0.31 TCGA-CH-5766-01 6 152558076 152558076 G A SYNE1 Missense_Mutation p.S6692F 0.08 benign(0.19) TCGA-CH-5766-01 7 100348486 100348486 C A ZAN Silent p.V496V 0.12 TCGA-CH-5766-01 8 106814510 106814510 C T ZFPM2 Missense_Mutation p.R734C 0.06 deleterious(0) probably_damaging(0.998) TCGA-CH-5766-01 9 138651633 138651633 G A KCNT1 Silent p.T321T 0.27 TCGA-CH-5766-01 9 139835320 139835320 G A FBXW5 3'UTR 0.46 TCGA-CH-5766-01 9 95108042 95108042 G T CENPP Missense_Mutation p.C147F 0.21 tolerated(0.52) possibly_damaging(0.639) TCGA-CH-5766-01 X 100364926 100364926 G A CENPI Missense_Mutation p.R177H 0.55 tolerated(1) benign(0) TCGA-CH-5766-01 X 131219961 131219961 G A FRMD7 Missense_Mutation p.H162Y 0.44 deleterious(0.03) benign(0.02) TCGA-CH-5766-01 X 54359994 54359994 C T WNK3 Missense_Mutation p.R38K 0.07 tolerated(0.34) benign(0.002) TCGA-CH-5767-01 10 24884077 24884077 G C ARHGAP21 Missense_Mutation p.P1252R 0.12 deleterious(0) probably_damaging(0.951) TCGA-CH-5767-01 10 7780658 7780658 A G ITIH2 Missense_Mutation p.I678V 0.11 tolerated(0.66) benign(0) TCGA-CH-5767-01 11 18062244 18062244 A C TPH1 Missense_Mutation p.F22L 0.11 tolerated(0.11) benign(0.171) TCGA-CH-5767-01 11 20622883 20622883 A G SLC6A5 Missense_Mutation p.E71G 0.46 deleterious_low_confidence(0.01) benign(0.115) TCGA-CH-5767-01 11 20628637 20628637 C T SLC6A5 Missense_Mutation p.A255V 0.06 deleterious(0.05) benign(0.417) TCGA-CH-5767-01 11 44626916 44626916 C T CD82 Silent p.F91F 0.47 TCGA-CH-5767-01 13 40175053 40175053 G A LHFP Missense_Mutation p.L101F 0.08 tolerated(0.24) possibly_damaging(0.686) TCGA-CH-5767-01 15 73015166 73015166 T A BBS4 Missense_Mutation p.I146K 0.27 tolerated(0.12) benign(0.148) TCGA-CH-5767-01 16 29996717 29996717 G T TAOK2 Missense_Mutation p.G536W 0.39 deleterious(0.02) probably_damaging(0.934) TCGA-CH-5767-01 16 70508758 70508758 C T FUK Nonsense_Mutation p.R741* 0.22 TCGA-CH-5767-01 17 37566711 37566711 G A MED1 Missense_Mutation p.S588L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.777) TCGA-CH-5767-01 17 56385061 56385061 C A BZRAP1 Missense_Mutation p.A1632S 0.10 deleterious(0) probably_damaging(0.999) TCGA-CH-5767-01 17 61972640 61972640 C T CSH1 Intron 0.45 TCGA-CH-5767-01 19 3651957 3651957 C T PIP5K1C Missense_Mutation p.E332K 0.31 deleterious(0.04) possibly_damaging(0.866) TCGA-CH-5767-01 19 39334540 39334540 A G HNRNPL Silent p.N274N 0.32 TCGA-CH-5767-01 19 43585093 43585093 T C PSG2 Missense_Mutation p.I124V 0.09 tolerated(0.52) possibly_damaging(0.742) TCGA-CH-5767-01 19 4950688 4950688 G A UHRF1 RNA 0.39 TCGA-CH-5767-01 19 52130800 52130800 G A SIGLEC5 Silent p.H399H 0.35 TCGA-CH-5767-01 19 7975046 7975046 G A MAP2K7 Intron 0.56 TCGA-CH-5767-01 1 120539834 120539834 A T NOTCH2 Nonsense_Mutation p.C179* 0.10 TCGA-CH-5767-01 1 248551568 248551568 G T OR2T6 Missense_Mutation p.R220M 0.07 tolerated(0.22) possibly_damaging(0.897) TCGA-CH-5767-01 20 40118655 40118656 - T CHD6 Frame_Shift_Ins p.N481Kfs*6 0.33 TCGA-CH-5767-01 20 51870363 51870363 G A TSHZ2 Missense_Mutation p.M122I 0.43 deleterious(0) benign(0.076) TCGA-CH-5767-01 22 21384286 21384286 C T SLC7A4 Missense_Mutation p.G446D 0.22 tolerated(0.25) benign(0.011) TCGA-CH-5767-01 2 167992447 167992447 C T XIRP2 Missense_Mutation p.S146L 0.39 possibly_damaging(0.864) TCGA-CH-5767-01 2 179404631 179404631 C T TTN Missense_Mutation p.V32721I 0.30 TCGA-CH-5767-01 2 179585679 179585679 G A TTN Silent p.D7689D 0.32 TCGA-CH-5767-01 2 32824954 32824954 A C BIRC6 Missense_Mutation p.Y4660S 0.07 probably_damaging(0.999) TCGA-CH-5767-01 3 127779441 127779441 A G SEC61A1 Missense_Mutation p.T185A 0.38 tolerated(0.17) benign(0.06) TCGA-CH-5767-01 3 130435328 130435328 C T PIK3R4 Missense_Mutation p.R748H 0.05 deleterious(0) probably_damaging(0.999) TCGA-CH-5767-01 3 40573524 40573524 G A ZNF621 Missense_Mutation p.G88D 0.13 tolerated(0.21) benign(0.004) TCGA-CH-5767-01 4 9783992 9783992 C T DRD5 Silent p.C113C 0.45 TCGA-CH-5767-01 5 140754115 140754115 G A PCDHGA6 Missense_Mutation p.M155I 0.06 deleterious_low_confidence(0.02) benign(0.001) TCGA-CH-5767-01 5 98218811 98218811 C T CHD1 Missense_Mutation p.R900Q 0.31 deleterious(0) probably_damaging(1) TCGA-CH-5767-01 6 100009259 100009259 A C CCNC Missense_Mutation p.L93W 0.06 deleterious(0) probably_damaging(1) TCGA-CH-5767-01 6 16145318 16145318 T C MYLIP Missense_Mutation p.S340P 0.07 tolerated(0.24) benign(0.001) TCGA-CH-5767-01 6 38548004 38548004 G A BTBD9 Nonsense_Mutation p.R342* 0.10 TCGA-CH-5767-01 6 39880665 39880665 C A MOCS1 Missense_Mutation p.V281L 0.42 tolerated(1) benign(0.001) TCGA-CH-5767-01 7 73604629 73604629 C T EIF4H Silent p.F154F 0.36 TCGA-CH-5767-01 7 76610478 76610478 C T UPK3B Intron 0.07 TCGA-CH-5767-01 8 113308235 113308235 G A CSMD3 Missense_Mutation p.A2814V 0.47 deleterious(0.02) possibly_damaging(0.49) TCGA-CH-5767-01 8 23539041 23539041 T G NKX3-1 Missense_Mutation p.H133P 0.73 deleterious(0) probably_damaging(1) TCGA-CH-5767-01 8 55049839 55049839 A C MRPL15 Missense_Mutation p.Q92P 0.59 tolerated(0.07) benign(0.236) TCGA-CH-5767-01 9 127765792 127765792 C G SCAI Missense_Mutation p.E330Q 0.24 deleterious(0.05) probably_damaging(0.964) TCGA-CH-5767-01 9 71844114 71844114 G C TJP2 Missense_Mutation p.A521P 0.04 tolerated(0.75) benign(0.007) TCGA-CH-5768-01 10 105882676 105882676 T C SFR1 Intron 0.22 TCGA-CH-5768-01 10 127737879 127737879 G A ADAM12 Silent p.G623G 0.34 TCGA-CH-5768-01 10 26581402 26581402 C T GAD2 Silent p.T465T 0.29 TCGA-CH-5768-01 10 51584833 51584833 C T NCOA4 Missense_Mutation p.S327F 0.32 tolerated(0.72) benign(0.322) TCGA-CH-5768-01 10 98762741 98762741 C T SLIT1 Missense_Mutation p.V1292M 0.05 tolerated(0.11) probably_damaging(1) TCGA-CH-5768-01 11 43418199 43418199 G C TTC17 Intron 0.28 TCGA-CH-5768-01 11 58206811 58206811 C A OR5B12 Missense_Mutation p.A272S 0.05 deleterious_low_confidence(0.04) benign(0.412) TCGA-CH-5768-01 11 62389399 62389399 G T B3GAT3 Missense_Mutation p.N7K 0.35 tolerated(0.15) benign(0.091) TCGA-CH-5768-01 12 133249852 133249852 C T POLE Silent p.T457T 0.36 TCGA-CH-5768-01 12 57587385 57587385 G A LRP1 Missense_Mutation p.S2574N 0.06 benign(0.002) TCGA-CH-5768-01 13 32759237 32759237 C T FRY Missense_Mutation p.R1091W 0.06 deleterious(0) probably_damaging(0.997) TCGA-CH-5768-01 14 106321713 106321713 G A IGHM Missense_Mutation p.T174M 0.13 tolerated(0.11) possibly_damaging(0.462) TCGA-CH-5768-01 15 89074369 89074369 C G DET1 Missense_Mutation p.D201H 0.32 deleterious(0.03) possibly_damaging(0.548) TCGA-CH-5768-01 16 16243988 16243988 G A ABCC6 3'UTR 0.15 TCGA-CH-5768-01 16 21033374 21033374 G A DNAH3 Missense_Mutation p.R1899C 0.35 deleterious(0.01) benign(0.006) TCGA-CH-5768-01 16 2903247 2903247 G A PRSS22 Silent p.A267A 0.11 TCGA-CH-5768-01 16 7645571 7645571 C T RBFOX1 Silent p.F183F 0.39 TCGA-CH-5768-01 16 89804607 89804607 C T ZNF276 Missense_Mutation p.P600S 0.20 tolerated(0.11) benign(0.255) TCGA-CH-5768-01 16 9858281 9858281 C A GRIN2A Missense_Mutation p.E1040D 0.29 tolerated(0.52) possibly_damaging(0.634) TCGA-CH-5768-01 17 15976858 15976858 A C NCOR1 Silent p.T1232T 0.07 TCGA-CH-5768-01 17 18052094 18052094 C T MYO15A Missense_Mutation p.R2262C 0.60 unknown(0) TCGA-CH-5768-01 17 80273173 80273173 C T CD7 3'UTR 0.27 TCGA-CH-5768-01 18 30517984 30517984 G A CCDC178 Silent p.N865N 0.36 TCGA-CH-5768-01 19 13410024 13410024 G A CACNA1A Missense_Mutation p.T808M 0.05 benign(0.043) TCGA-CH-5768-01 19 17571713 17571713 G A NXNL1 5'UTR 0.24 TCGA-CH-5768-01 19 31769517 31769517 C T TSHZ3 Silent p.S394S 0.03 TCGA-CH-5768-01 19 51361384 51361384 T G KLK3 Missense_Mutation p.D102E 0.42 deleterious(0) benign(0.004) TCGA-CH-5768-01 19 55707952 55707952 G A PTPRH Missense_Mutation p.T732M 0.43 benign(0.284) TCGA-CH-5768-01 1 109824423 109824423 G A PSRC1 Missense_Mutation p.R113W 0.46 deleterious(0) probably_damaging(1) TCGA-CH-5768-01 1 111983947 111983947 G C WDR77 Missense_Mutation p.L312V 0.10 tolerated(0.16) possibly_damaging(0.577) TCGA-CH-5768-01 1 152636835 152636835 G A LCE2D Missense_Mutation p.R85Q 0.39 tolerated_low_confidence(0.39) unknown(0) TCGA-CH-5768-01 1 158368837 158368837 C T OR10T2 Silent p.R140R 0.03 TCGA-CH-5768-01 1 158725158 158725158 C A OR6K6 Missense_Mutation p.L185I 0.05 tolerated(0.17) possibly_damaging(0.531) TCGA-CH-5768-01 1 179452332 179452332 C T AXDND1 Silent p.N689N 0.20 TCGA-CH-5768-01 1 237969520 237969520 C A RYR2 Missense_Mutation p.D4745E 0.26 probably_damaging(0.918) TCGA-CH-5768-01 20 17462414 17462414 G A PCSK2 Missense_Mutation p.R539H 0.42 deleterious(0) probably_damaging(1) TCGA-CH-5768-01 20 34022673 34022673 G A GDF5OS Silent p.P239P 0.06 TCGA-CH-5768-01 22 36876770 36876770 G A TXN2 Missense_Mutation p.P39S 0.29 tolerated(0.29) benign(0.001) TCGA-CH-5768-01 22 46643050 46643050 C T CDPF1 Missense_Mutation p.G61D 0.09 deleterious(0) probably_damaging(0.998) TCGA-CH-5768-01 2 179486462 179486462 T G TTN Missense_Mutation p.E15030A 0.11 TCGA-CH-5768-01 2 189874962 189874962 T C COL3A1 Silent p.C1294C 0.26 TCGA-CH-5768-01 2 21229067 21229067 C T APOB Missense_Mutation p.R3558H 0.34 benign(0.066) TCGA-CH-5768-01 2 228890232 228890232 C T SPHKAP Missense_Mutation p.V107I 0.15 tolerated(0.09) benign(0.116) TCGA-CH-5768-01 2 29295481 29295481 G A C2orf71 Silent p.S549S 0.32 TCGA-CH-5768-01 4 25783976 25783976 T C SEL1L3 Missense_Mutation p.K782R 0.34 tolerated(0.18) benign(0.232) TCGA-CH-5768-01 5 128362928 128362928 T A SLC27A6 Missense_Mutation p.F453Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-CH-5768-01 5 180432367 180432367 C T BTNL3 Missense_Mutation p.P299L 0.28 deleterious(0.02) possibly_damaging(0.548) TCGA-CH-5768-01 5 32087621 32087621 G A PDZD2 Missense_Mutation p.G1356D 0.12 tolerated(0.1) benign(0.086) TCGA-CH-5768-01 6 32053832 32053832 G A TNXB Missense_Mutation p.T948M 0.44 probably_damaging(0.997) TCGA-CH-5768-01 7 137082144 137082144 A T DGKI Nonsense_Mutation p.L987* 0.04 TCGA-CH-5768-01 7 44040598 44040598 T C SPDYE1 5'UTR 0.26 TCGA-CH-5768-01 7 71130409 71130409 G A WBSCR17 Missense_Mutation p.G365E 0.07 deleterious(0) probably_damaging(0.998) TCGA-CH-5768-01 8 14095117 14095117 G A SGCZ Silent p.T136T 0.11 TCGA-CH-5768-01 8 142226017 142226017 G A SLC45A4 Silent p.Y543Y 0.16 TCGA-CH-5768-01 8 26721617 26721617 T G ADRA1A Missense_Mutation p.L290F 0.09 tolerated(0.47) probably_damaging(0.97) TCGA-CH-5768-01 8 70533358 70533358 C T SULF1 Missense_Mutation p.T489M 0.21 tolerated(0.26) possibly_damaging(0.505) TCGA-CH-5768-01 9 13190228 13190228 G A MPDZ Missense_Mutation p.A680V 0.05 tolerated(0.31) benign(0) TCGA-CH-5768-01 X 117700566 117700566 G T DOCK11 Nonsense_Mutation p.E301* 0.06 TCGA-CH-5768-01 X 128599698 128599698 G T SMARCA1 Nonsense_Mutation p.Y943* 0.77 TCGA-CH-5768-01 X 69844762 69844762 T C TEX11 Missense_Mutation p.I556V 0.09 tolerated(0.49) benign(0.008) TCGA-CH-5769-01 10 114925494 114925494 C - TCF7L2 Frame_Shift_Del p.L526Wfs*6 0.21 TCGA-CH-5769-01 10 135093375 135093375 G A TUBGCP2 Silent p.R896R 0.08 TCGA-CH-5769-01 10 25314125 25314125 G A THNSL1 Missense_Mutation p.C658Y 0.05 tolerated(0.05) probably_damaging(1) TCGA-CH-5769-01 10 88702968 88702968 G A MMRN2 Missense_Mutation p.R525W 0.12 deleterious(0.02) possibly_damaging(0.513) TCGA-CH-5769-01 11 118371737 118371737 G A KMT2A Missense_Mutation p.R2065H 0.05 probably_damaging(0.999) TCGA-CH-5769-01 11 133799647 133799647 C T IGSF9B Missense_Mutation p.R517Q 0.08 tolerated(0.21) benign(0.315) TCGA-CH-5769-01 11 18735656 18735656 G T IGSF22 Missense_Mutation p.A613D 0.04 deleterious(0.01) possibly_damaging(0.681) TCGA-CH-5769-01 11 19076976 19076976 G A MRGPRX2 Missense_Mutation p.S325L 0.09 deleterious(0.02) benign(0.189) TCGA-CH-5769-01 11 420567 420567 G A ANO9 Missense_Mutation p.A561V 0.10 deleterious(0) probably_damaging(0.982) TCGA-CH-5769-01 11 61551032 61551032 T C MYRF Missense_Mutation p.S1027P 0.03 tolerated(1) benign(0) TCGA-CH-5769-01 11 71725778 71725778 C T NUMA1 Missense_Mutation p.R924H 0.06 possibly_damaging(0.888) TCGA-CH-5769-01 12 110226321 110226321 G T TRPV4 Missense_Mutation p.L698M 0.09 deleterious(0.02) probably_damaging(1) TCGA-CH-5769-01 12 120741830 120741830 C T SIRT4 Missense_Mutation p.R156C 0.06 deleterious(0.03) benign(0.118) TCGA-CH-5769-01 12 125465071 125465071 C T DHX37 Missense_Mutation p.V235I 0.04 tolerated(0.22) benign(0) TCGA-CH-5769-01 12 49237789 49237789 C T DDX23 Missense_Mutation p.R85Q 0.05 tolerated_low_confidence(0.13) unknown(0) TCGA-CH-5769-01 12 6425065 6425065 C T PLEKHG6 Nonsense_Mutation p.R196* 0.25 TCGA-CH-5769-01 12 6669363 6669363 G A NOP2 Missense_Mutation p.R597C 0.07 deleterious(0.03) possibly_damaging(0.479) TCGA-CH-5769-01 12 8804283 8804283 G T MFAP5 Silent p.S74S 0.05 TCGA-CH-5769-01 13 108861451 108861451 C T LIG4 Silent p.K722K 0.08 TCGA-CH-5769-01 13 111138135 111138135 G A COL4A2 Silent p.V1053V 0.05 TCGA-CH-5769-01 13 111156530 111156530 G T COL4A2 Nonsense_Mutation p.G1441* 0.09 TCGA-CH-5769-01 13 39918026 39918026 G A LHFP 3'UTR 0.11 TCGA-CH-5769-01 14 63175050 63175050 G A KCNH5 Nonsense_Mutation p.Q715* 0.06 TCGA-CH-5769-01 14 90650708 90650708 C T KCNK13 Silent p.Y196Y 0.07 TCGA-CH-5769-01 14 91647609 91647609 T C C14orf159 Silent p.C270C 0.07 TCGA-CH-5769-01 14 94756667 94756667 T C SERPINA10 Silent p.R88R 0.18 TCGA-CH-5769-01 15 52970217 52970217 A G FAM214A Translation_Start_Site p.M1? 0.09 deleterious(0) benign(0.118) TCGA-CH-5769-01 15 66618502 66618502 C T DIS3L Silent p.H667H 0.08 TCGA-CH-5769-01 15 68649516 68649516 C T ITGA11 Missense_Mutation p.R241Q 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-CH-5769-01 16 17232351 17232351 C T XYLT1 Missense_Mutation p.C542Y 0.05 deleterious(0) probably_damaging(1) TCGA-CH-5769-01 16 22358681 22358681 C T CDR2 Missense_Mutation p.V324M 0.11 tolerated(0.15) possibly_damaging(0.782) TCGA-CH-5769-01 16 2239048 2239048 G A CASKIN1 Silent p.N199N 0.13 TCGA-CH-5769-01 16 3139448 3139448 C T ZSCAN10 Missense_Mutation p.A608T 0.05 tolerated(0.2) benign(0.028) TCGA-CH-5769-01 16 68405352 68405352 C T SMPD3 Missense_Mutation p.V245M 0.13 tolerated(0.12) benign(0.066) TCGA-CH-5769-01 16 70068169 70068169 C T MIR1972-2 3'Flank 0.11 TCGA-CH-5769-01 17 10212613 10212613 G A MYH13 Missense_Mutation p.R1703C 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-CH-5769-01 17 11865470 11865470 A C DNAH9 Missense_Mutation p.Q4377P 0.08 possibly_damaging(0.864) TCGA-CH-5769-01 17 17701153 17701153 G A RAI1 Missense_Mutation p.A1631T 0.06 tolerated(0.47) benign(0.002) TCGA-CH-5769-01 17 18043898 18043898 C A MYO15A Missense_Mutation p.S1760Y 0.03 unknown(0) TCGA-CH-5769-01 17 18872377 18872377 G A SLC5A10 Missense_Mutation p.A156T 0.12 deleterious(0) possibly_damaging(0.626) TCGA-CH-5769-01 17 19314701 19314701 C A RNF112 5'UTR 0.09 TCGA-CH-5769-01 17 31087406 31087406 T C MYO1D Missense_Mutation p.I400V 0.04 deleterious(0) probably_damaging(0.939) TCGA-CH-5769-01 17 40557266 40557266 G A PTRF Silent p.D204D 0.04 TCGA-CH-5769-01 17 40811928 40811928 C T TUBG2 Silent p.T42T 0.06 TCGA-CH-5769-01 17 41891642 41891642 G A MPP3 Missense_Mutation p.P366L 0.04 tolerated(0.18) benign(0.001) TCGA-CH-5769-01 17 42636103 42636103 G A FZD2 Silent p.S349S 0.07 TCGA-CH-5769-01 17 42855196 42855196 G A ADAM11 Missense_Mutation p.G679S 0.08 tolerated(0.35) benign(0.02) TCGA-CH-5769-01 17 4995356 4995356 G A ZFP3 Missense_Mutation p.R186Q 0.03 tolerated(0.71) benign(0.125) TCGA-CH-5769-01 17 5033903 5033903 C T USP6 Nonsense_Mutation p.R27* 0.11 TCGA-CH-5769-01 17 55339544 55339544 G A MSI2 Silent p.A101A 0.08 TCGA-CH-5769-01 17 6381355 6381355 C T PITPNM3 Silent p.A280A 0.13 TCGA-CH-5769-01 17 65026808 65026808 G A CACNG4 Silent p.A224A 0.18 TCGA-CH-5769-01 17 75398336 75398336 G A SEPT9 Missense_Mutation p.R91Q 0.12 deleterious_low_confidence(0.01) probably_damaging(0.99) TCGA-CH-5769-01 18 30350295 30350295 G T KLHL14 Missense_Mutation p.P87Q 0.07 tolerated(0.09) benign(0) TCGA-CH-5769-01 18 34378380 34378380 A T TPGS2 Intron 0.06 TCGA-CH-5769-01 18 7007238 7007238 G A LAMA1 Missense_Mutation p.A1387V 0.07 tolerated(0.12) benign(0.266) TCGA-CH-5769-01 18 77623902 77623902 C T KCNG2 Missense_Mutation p.R79C 0.19 tolerated(0.09) probably_damaging(0.91) TCGA-CH-5769-01 18 77896569 77896569 T C ADNP2 Silent p.F1091F 0.08 TCGA-CH-5769-01 19 10262102 10262102 C T DNMT1 Missense_Mutation p.R746H 0.08 deleterious(0.01) possibly_damaging(0.62) TCGA-CH-5769-01 19 1068742 1068742 C T HMHA1 Silent p.D156D 0.08 TCGA-CH-5769-01 19 11624790 11624790 G A ECSIT Missense_Mutation p.R115C 0.06 deleterious(0) probably_damaging(0.994) TCGA-CH-5769-01 19 12881812 12881812 C T HOOK2 Missense_Mutation p.R279Q 0.06 tolerated(0.3) benign(0.023) TCGA-CH-5769-01 19 18313413 18313413 C T RAB3A Silent p.S46S 0.13 TCGA-CH-5769-01 19 19748980 19748980 C A GMIP Missense_Mutation p.E259D 0.18 tolerated(0.1) benign(0.031) TCGA-CH-5769-01 19 36206307 36206307 C A ZBTB32 Missense_Mutation p.P260H 0.10 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-CH-5769-01 19 42584668 42584668 G A ZNF574 Missense_Mutation p.R637H 0.04 tolerated(0.27) benign(0) TCGA-CH-5769-01 19 45476426 45476426 C T CLPTM1 Missense_Mutation p.R90C 0.10 tolerated(0.05) probably_damaging(0.964) TCGA-CH-5769-01 19 57132798 57132798 C T ZNF71 Missense_Mutation p.P48L 0.15 tolerated(0.53) benign(0.029) TCGA-CH-5769-01 19 8976368 8976368 C A MUC16 Missense_Mutation p.G14154C 0.14 probably_damaging(0.996) TCGA-CH-5769-01 19 9271970 9271970 G A ZNF317 Missense_Mutation p.R550Q 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-CH-5769-01 1 109772145 109772145 G A SARS Missense_Mutation p.R133Q 0.09 tolerated(0.2) benign(0.374) TCGA-CH-5769-01 1 14105677 14105677 G A PRDM2 Missense_Mutation p.A463T 0.09 benign(0.168) TCGA-CH-5769-01 1 149885321 149885321 C T SV2A Silent p.K24K 0.21 TCGA-CH-5769-01 1 183106827 183106827 A C LAMC1 Missense_Mutation p.E1446D 0.10 tolerated(0.41) benign(0.004) TCGA-CH-5769-01 1 185269161 185269161 A G IVNS1ABP Silent p.L491L 0.14 TCGA-CH-5769-01 1 228111994 228111994 C T WNT9A Missense_Mutation p.A154T 0.14 deleterious(0.01) possibly_damaging(0.86) TCGA-CH-5769-01 1 228456388 228456388 C T OBSCN Silent p.R1857R 0.09 TCGA-CH-5769-01 1 231830155 231830155 T C DISC1 Silent p.L217L 0.09 TCGA-CH-5769-01 1 32221807 32221807 C T BAI2 Missense_Mutation p.A211T 0.09 tolerated(0.76) benign(0.025) TCGA-CH-5769-01 1 40228862 40228862 C T BMP8B Missense_Mutation p.A321T 0.05 deleterious(0) probably_damaging(0.991) TCGA-CH-5769-01 1 52403035 52403035 C T RAB3B Missense_Mutation p.R93H 0.11 deleterious(0.02) possibly_damaging(0.72) TCGA-CH-5769-01 1 62740427 62740427 G - KANK4 Frame_Shift_Del p.Q117Rfs*9 0.29 TCGA-CH-5769-01 1 7723412 7723412 G T CAMTA1 Splice_Site p.X269_splice 0.17 TCGA-CH-5769-01 1 89480252 89480252 G A GBP3 Nonsense_Mutation p.Q136* 0.13 TCGA-CH-5769-01 20 264701 264701 G A C20orf96 Missense_Mutation p.T70M 0.08 tolerated(0.19) benign(0.005) TCGA-CH-5769-01 21 31062069 31062069 C T GRIK1 Missense_Mutation p.V175M 0.08 deleterious(0) probably_damaging(0.971) TCGA-CH-5769-01 21 43412180 43412180 G A ZBTB21 Silent p.C675C 0.07 TCGA-CH-5769-01 22 30768247 30768247 G A CCDC157 Missense_Mutation p.R436H 0.22 deleterious(0) probably_damaging(0.995) TCGA-CH-5769-01 2 101656775 101656775 G A TBC1D8 Silent p.H300H 0.27 TCGA-CH-5769-01 2 144381770 144381770 T - ARHGAP15 Frame_Shift_Del p.F359Sfs*33 0.13 TCGA-CH-5769-01 2 170938348 170938348 C T UBR3 Silent p.L1888L 0.06 TCGA-CH-5769-01 2 171863509 171863509 C A TLK1 Missense_Mutation p.R494I 0.09 deleterious(0.01) possibly_damaging(0.904) TCGA-CH-5769-01 2 1926178 1926178 C T MYT1L Missense_Mutation p.E455K 0.13 deleterious(0.01) possibly_damaging(0.678) TCGA-CH-5769-01 2 231033860 231033860 C T SP110 Missense_Mutation p.G708S 0.09 tolerated_low_confidence(1) probably_damaging(0.935) TCGA-CH-5769-01 2 238274526 238274526 C T COL6A3 Missense_Mutation p.V1885M 0.11 probably_damaging(0.999) TCGA-CH-5769-01 2 239141044 239141044 G A AC016757.3 5'Flank 0.04 TCGA-CH-5769-01 2 28761155 28761155 A C PLB1 Intron 0.06 TCGA-CH-5769-01 2 43458187 43458187 A - THADA Frame_Shift_Del p.L1921Wfs*10 0.09 TCGA-CH-5769-01 2 60688396 60688396 C T BCL11A Missense_Mutation p.V551M 0.08 deleterious(0.05) possibly_damaging(0.7) TCGA-CH-5769-01 3 171427351 171427351 A G PLD1 Missense_Mutation p.W354R 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-CH-5769-01 3 186793469 186793469 G T ST6GAL1 Missense_Mutation p.G367C 0.07 probably_damaging(1) TCGA-CH-5769-01 3 44442728 44442728 G T TCAIM Silent p.G384G 0.04 TCGA-CH-5769-01 3 46724745 46724745 C A ALS2CL Silent p.L328L 0.12 TCGA-CH-5769-01 3 46945059 46945059 C T PTH1R Silent p.N565N 0.03 TCGA-CH-5769-01 3 57303570 57303570 A T APPL1 Missense_Mutation p.D662V 0.06 deleterious(0) probably_damaging(0.998) TCGA-CH-5769-01 3 69047176 69047176 C T EOGT Missense_Mutation p.V273M 0.04 tolerated(0.16) probably_damaging(0.99) TCGA-CH-5769-01 4 106158589 106158589 T - TET2 Intron 0.10 TCGA-CH-5769-01 4 110447421 110447421 G A SEC24B Missense_Mutation p.R944H 0.07 deleterious(0) probably_damaging(0.979) TCGA-CH-5769-01 4 110791704 110791704 G C LRIT3 Missense_Mutation p.C600S 0.06 tolerated(0.06) benign(0.021) TCGA-CH-5769-01 4 13604158 13604158 T C BOD1L1 Missense_Mutation p.K1456E 0.13 benign(0) TCGA-CH-5769-01 4 178352896 178352896 T - AGA Frame_Shift_Del p.N336Ifs*29 0.08 TCGA-CH-5769-01 4 46930324 46930324 A G GABRA4 Missense_Mutation p.V528A 0.04 deleterious(0) probably_damaging(0.998) TCGA-CH-5769-01 4 680048 680048 C T MFSD7 Missense_Mutation p.R113H 0.09 deleterious(0) probably_damaging(0.998) TCGA-CH-5769-01 4 71509665 71509666 - AG ENAM Frame_Shift_Ins p.H845Nfs*25 0.09 TCGA-CH-5769-01 5 140176233 140176233 G A PCDHA2 Missense_Mutation p.A562T 0.06 deleterious_low_confidence(0.01) benign(0.152) TCGA-CH-5769-01 5 140188641 140188641 C T PCDHA4 Silent p.R623R 0.05 TCGA-CH-5769-01 5 140263967 140263967 G A PCDHA13 Missense_Mutation p.C705Y 0.06 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-CH-5769-01 5 153726723 153726723 G A GALNT10 Intron 0.16 TCGA-CH-5769-01 6 107390676 107390676 G A BEND3 Silent p.F573F 0.04 TCGA-CH-5769-01 6 125550342 125550342 G A TPD52L1 Missense_Mutation p.G72S 0.04 deleterious(0) probably_damaging(1) TCGA-CH-5769-01 6 168443358 168443358 G A KIF25 Missense_Mutation p.R316Q 0.04 deleterious(0) probably_damaging(0.995) TCGA-CH-5769-01 6 43126631 43126631 C T PTK7 Missense_Mutation p.A941V 0.06 deleterious(0) probably_damaging(0.939) TCGA-CH-5769-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.12 TCGA-CH-5769-01 6 76022502 76022502 C T FILIP1 Missense_Mutation p.A1016T 0.13 tolerated(0.41) benign(0.205) TCGA-CH-5769-01 6 89891738 89891738 G A GABRR1 Missense_Mutation p.R279C 0.06 deleterious(0) probably_damaging(1) TCGA-CH-5769-01 7 130041784 130041785 TG - CEP41 Nonsense_Mutation p.Y193* 0.08 TCGA-CH-5769-01 7 143771567 143771567 G A OR2A25 Silent p.L85L 0.05 TCGA-CH-5769-01 7 151798006 151798006 C T GALNT11 Missense_Mutation p.A140V 0.03 tolerated(0.31) benign(0.001) TCGA-CH-5769-01 7 44612025 44612025 C T DDX56 Missense_Mutation p.R189Q 0.07 deleterious(0.05) benign(0.108) TCGA-CH-5769-01 7 6210514 6210514 C T CYTH3 Missense_Mutation p.A220T 0.17 tolerated(0.22) benign(0) TCGA-CH-5769-01 7 65419190 65419190 C T VKORC1L1 Missense_Mutation p.T145M 0.11 deleterious(0.03) probably_damaging(0.944) TCGA-CH-5769-01 7 73609663 73609663 C T EIF4H 3'UTR 0.22 TCGA-CH-5769-01 7 95041699 95041699 G A PON2 Missense_Mutation p.R98W 0.05 deleterious(0.05) benign(0.006) TCGA-CH-5769-01 7 95157409 95157409 A G ASB4 Missense_Mutation p.K258E 0.06 deleterious(0.02) possibly_damaging(0.783) TCGA-CH-5769-01 8 100454735 100454735 G A VPS13B Missense_Mutation p.G1106E 0.05 deleterious(0.01) probably_damaging(0.956) TCGA-CH-5769-01 8 124799551 124799551 C T FAM91A1 Missense_Mutation p.R377C 0.11 deleterious(0) probably_damaging(0.995) TCGA-CH-5769-01 8 1616604 1616604 C T DLGAP2 Silent p.D560D 0.15 TCGA-CH-5769-01 8 22415644 22415644 C T SORBS3 Silent p.S139S 0.04 TCGA-CH-5769-01 8 52321017 52321017 C T PXDNL Missense_Mutation p.G1056D 0.09 deleterious(0) probably_damaging(0.999) TCGA-CH-5769-01 8 79629650 79629650 C T ZC2HC1A Silent p.C300C 0.03 TCGA-CH-5769-01 8 8998482 8998482 C T PPP1R3B Missense_Mutation p.G227D 0.13 deleterious(0) probably_damaging(0.996) TCGA-CH-5769-01 9 101980873 101980873 G A ALG2 Silent p.V198V 0.11 TCGA-CH-5769-01 9 106889615 106889615 A T SMC2 Missense_Mutation p.I882L 0.24 tolerated(0.22) benign(0.002) TCGA-CH-5769-01 9 109689585 109689585 T C ZNF462 Missense_Mutation p.V1131A 0.06 probably_damaging(0.97) TCGA-CH-5769-01 9 130866086 130866087 - C SLC25A25 Frame_Shift_Ins p.L241Pfs*59 0.14 TCGA-CH-5769-01 9 131768055 131768055 G T NUP188 Missense_Mutation p.E1623D 0.06 deleterious(0.05) possibly_damaging(0.84) TCGA-CH-5769-01 9 139401818 139401818 G A NOTCH1 Silent p.N1194N 0.09 TCGA-CH-5769-01 9 43625067 43625067 G A SPATA31A6 Missense_Mutation p.T1207M 0.06 deleterious(0) probably_damaging(0.972) TCGA-CH-5769-01 9 99099021 99099021 A G SLC35D2 Missense_Mutation p.F244L 0.27 deleterious(0) probably_damaging(0.978) TCGA-CH-5769-01 X 153587627 153587627 G A FLNA Silent p.G1430G 0.12 TCGA-CH-5769-01 X 2184932 2184932 C T DHRSX Missense_Mutation p.G149S 0.08 deleterious(0.01) possibly_damaging(0.73) TCGA-CH-5771-01 11 10800740 10800740 A G CTR9 3'UTR 0.32 TCGA-CH-5771-01 11 119207000 119207000 G T RNF26 Missense_Mutation p.V390L 0.14 deleterious(0) probably_damaging(0.996) TCGA-CH-5771-01 12 123834911 123834911 A G SBNO1 Silent p.I26I 0.04 TCGA-CH-5771-01 12 51696475 51696475 C T BIN2 Missense_Mutation p.V103I 0.12 tolerated(0.26) benign(0.014) TCGA-CH-5771-01 14 24675030 24675030 C A TSSK4 5'UTR 0.12 TCGA-CH-5771-01 15 28929317 28929317 T G RP11-578F21.2 5'Flank 0.14 TCGA-CH-5771-01 15 43276106 43276106 C T UBR1 Missense_Mutation p.R1380H 0.09 tolerated(0.06) possibly_damaging(0.667) TCGA-CH-5771-01 16 418564 418564 C T MRPL28 Silent p.R171R 0.10 TCGA-CH-5771-01 17 37762300 37762308 GGTCTGGCC - NEUROD2 In_Frame_Del p.R182_D184del 0.10 TCGA-CH-5771-01 17 6597493 6597493 G A SLC13A5 Missense_Mutation p.A360V 0.14 tolerated(0.06) possibly_damaging(0.491) TCGA-CH-5771-01 19 45762287 45762287 C T MARK4 Missense_Mutation p.P31L 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.718) TCGA-CH-5771-01 19 51768703 51768703 C T SIGLECL1 Missense_Mutation p.P35L 0.15 deleterious(0) probably_damaging(1) TCGA-CH-5771-01 1 156131152 156131152 G A SEMA4A Missense_Mutation p.E276K 0.14 deleterious(0.04) benign(0.212) TCGA-CH-5771-01 1 175046577 175046577 G A TNN Missense_Mutation p.R8H 0.03 tolerated_low_confidence(0.19) benign(0.001) TCGA-CH-5771-01 1 182921867 182921868 AC - SHCBP1L Frame_Shift_Del p.C134* 0.15 TCGA-CH-5771-01 1 32636498 32636498 T C KPNA6 3'UTR 0.20 TCGA-CH-5771-01 1 34112373 34112373 G A CSMD2 Missense_Mutation p.P1510L 0.09 deleterious(0) probably_damaging(0.982) TCGA-CH-5771-01 1 35915489 35915489 T C KIAA0319L Missense_Mutation p.T778A 0.12 tolerated(1) benign(0.003) TCGA-CH-5771-01 1 38442585 38442585 G T SF3A3 Missense_Mutation p.Q326K 0.13 tolerated(0.79) benign(0.403) TCGA-CH-5771-01 1 52704167 52704167 G C ZFYVE9 Missense_Mutation p.D360H 0.08 deleterious_low_confidence(0.01) benign(0.299) TCGA-CH-5771-01 20 57290253 57290253 C T NPEPL1 Silent p.A481A 0.28 TCGA-CH-5771-01 2 132021050 132021050 G C POTEE Missense_Mutation p.K674N 0.12 deleterious_low_confidence(0.05) benign(0.135) TCGA-CH-5771-01 2 167262388 167262388 C A SCN7A Missense_Mutation p.R1584I 0.12 deleterious(0) probably_damaging(0.998) TCGA-CH-5771-01 2 219566800 219566800 G A STK36 3'UTR 0.10 TCGA-CH-5771-01 4 114251487 114251487 C T ANK2 Missense_Mutation p.R996W 0.12 probably_damaging(0.999) TCGA-CH-5771-01 4 55138618 55138618 C T PDGFRA Missense_Mutation p.T432M 0.12 tolerated(0.05) benign(0.032) TCGA-CH-5771-01 5 133747428 133747428 G A CDKN2AIPNL Missense_Mutation p.R40C 0.08 deleterious(0) probably_damaging(0.927) TCGA-CH-5771-01 5 75427791 75427791 C T SV2C Silent p.D72D 0.11 TCGA-CH-5771-01 7 116340051 116340051 A G MET Missense_Mutation p.K305E 0.05 deleterious(0) benign(0.068) TCGA-CH-5771-01 7 86556150 86556150 T C KIAA1324L Missense_Mutation p.E391G 0.05 tolerated(0.26) benign(0.019) TCGA-CH-5771-01 8 55540711 55540711 T A RP1 Nonsense_Mutation p.C1423* 0.12 TCGA-CH-5771-01 8 72756371 72756371 G A MSC Missense_Mutation p.R15W 0.15 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-CH-5771-01 X 139866376 139866376 C A CDR1 Missense_Mutation p.L52F 0.26 tolerated(0.29) possibly_damaging(0.765) TCGA-CH-5771-01 X 31676189 31676189 G A DMD Missense_Mutation p.R2649W 0.24 possibly_damaging(0.835) TCGA-CH-5772-01 10 105798243 105798243 G A COL17A1 Silent p.P997P 0.04 TCGA-CH-5772-01 10 115986961 115986961 A C TDRD1 Missense_Mutation p.K1102N 0.34 deleterious(0) possibly_damaging(0.895) TCGA-CH-5772-01 10 50835688 50835688 G A CHAT Missense_Mutation p.R323H 0.03 deleterious(0.04) probably_damaging(0.976) TCGA-CH-5772-01 11 104899864 104899864 G C CASP1 Missense_Mutation p.C331W 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-CH-5772-01 11 117186309 117186309 C G BACE1 Missense_Mutation p.R68T 0.27 tolerated(0.09) probably_damaging(0.96) TCGA-CH-5772-01 11 133712384 133712384 G A SPATA19 Nonsense_Mutation p.R145* 0.04 TCGA-CH-5772-01 11 65123520 65123520 G C TIGD3 Missense_Mutation p.E81Q 0.05 tolerated(0.2) possibly_damaging(0.907) TCGA-CH-5772-01 12 13717457 13717457 G T GRIN2B Silent p.A905A 0.05 TCGA-CH-5772-01 12 2910444 2910444 G T FKBP4 Missense_Mutation p.Q398H 0.16 deleterious(0.05) possibly_damaging(0.551) TCGA-CH-5772-01 12 63543828 63543828 A G AVPR1A Silent p.G263G 0.04 TCGA-CH-5772-01 13 101944634 101944634 G A NALCN Missense_Mutation p.R295C 0.11 deleterious(0.03) probably_damaging(0.953) TCGA-CH-5772-01 13 52513267 52513267 G C ATP7B Missense_Mutation p.H1207D 0.04 deleterious(0) possibly_damaging(0.826) TCGA-CH-5772-01 14 101492436 101492436 A T MIR758 RNA 0.03 TCGA-CH-5772-01 15 89736470 89736470 A G ABHD2 Missense_Mutation p.Y334C 0.21 tolerated(0.06) benign(0.386) TCGA-CH-5772-01 15 89871740 89871740 G A POLG Silent p.D399D 0.46 TCGA-CH-5772-01 16 23392149 23392149 T C SCNN1B 3'UTR 0.09 TCGA-CH-5772-01 16 56976046 56976046 A G HERPUD1 Missense_Mutation p.H303R 0.04 deleterious(0) possibly_damaging(0.493) TCGA-CH-5772-01 16 83704517 83704517 G C CDH13 Silent p.G455G 0.04 TCGA-CH-5772-01 17 10405105 10405105 G T MYH1 Missense_Mutation p.Q1079K 0.11 deleterious(0.04) possibly_damaging(0.794) TCGA-CH-5772-01 17 33588030 33588030 G C SLFN5 Missense_Mutation p.L351F 0.05 deleterious(0.01) benign(0.002) TCGA-CH-5772-01 17 40723699 40723699 G T MLX 3'UTR 0.06 TCGA-CH-5772-01 17 48557076 48557076 T C RSAD1 Silent p.C74C 0.09 TCGA-CH-5772-01 17 7460486 7460486 G C TNFSF12 Intron 0.37 TCGA-CH-5772-01 17 8792523 8792523 C T PIK3R5 Silent p.G276G 0.25 TCGA-CH-5772-01 18 43668136 43668137 - T ATP5A1 Nonsense_Mutation p.Y246* 0.17 TCGA-CH-5772-01 19 18545063 18545063 G A SSBP4 3'UTR 0.04 TCGA-CH-5772-01 19 45656261 45656261 C A NKPD1 Silent p.T478T 0.19 TCGA-CH-5772-01 19 47423299 47423299 G A ARHGAP35 Missense_Mutation p.R456H 0.05 tolerated(0.12) possibly_damaging(0.902) TCGA-CH-5772-01 19 47876082 47876082 G A DHX34 Missense_Mutation p.A622T 0.11 tolerated(0.05) benign(0.027) TCGA-CH-5772-01 19 56369349 56369349 C T NLRP4 Missense_Mutation p.P197L 0.45 tolerated(0.21) benign(0.166) TCGA-CH-5772-01 19 57175472 57175472 G A ZNF835 Silent p.H365H 0.09 TCGA-CH-5772-01 1 153391728 153391728 C T S100A7A Silent p.A83A 0.05 TCGA-CH-5772-01 1 155028577 155028577 C T ADAM15 Nonsense_Mutation p.R256* 0.12 TCGA-CH-5772-01 1 158592860 158592860 G A SPTA1 Silent p.A2011A 0.42 TCGA-CH-5772-01 1 158736387 158736387 A T OR6N1 Missense_Mutation p.L29H 0.04 tolerated(0.09) benign(0.289) TCGA-CH-5772-01 1 212274088 212274088 T C DTL Silent p.L586L 0.09 TCGA-CH-5772-01 1 248551359 248551359 C T OR2T6 Silent p.F150F 0.08 TCGA-CH-5772-01 1 25617207 25617207 G A RHD Silent p.A137A 0.05 TCGA-CH-5772-01 1 95616924 95616924 A T TMEM56 Missense_Mutation p.K116N 0.03 tolerated(0.25) benign(0.076) TCGA-CH-5772-01 20 31890815 31890815 C A BPIFB1 Missense_Mutation p.Q359K 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-CH-5772-01 20 44751805 44751805 C T CD40 Silent p.V148V 0.31 TCGA-CH-5772-01 20 44869813 44869813 G A CDH22 Silent p.D113D 0.14 TCGA-CH-5772-01 22 23241829 23241829 G A IGLL5 3'Flank 0.07 TCGA-CH-5772-01 22 50941923 50941923 C T LMF2 Missense_Mutation p.R674H 0.15 tolerated(1) benign(0) TCGA-CH-5772-01 2 17998361 17998361 C A MSGN1 Missense_Mutation p.S192R 0.08 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CH-5772-01 2 211179711 211179711 G A MYL1 Missense_Mutation p.A19V 0.05 deleterious_low_confidence(0.05) unknown(0) TCGA-CH-5772-01 2 215890474 215890474 G A ABCA12 Nonsense_Mutation p.R404* 0.09 TCGA-CH-5772-01 2 29296170 29296170 G A C2orf71 Missense_Mutation p.R320C 0.13 tolerated(0.17) benign(0.028) TCGA-CH-5772-01 2 71582900 71582900 T - ZNF638 Frame_Shift_Del p.L457Yfs*113 0.09 TCGA-CH-5772-01 4 3148562 3148562 G A HTT Missense_Mutation p.S1061N 0.02 benign(0.009) TCGA-CH-5772-01 4 39064620 39064620 T G KLHL5 Missense_Mutation p.S162R 0.03 tolerated_low_confidence(0.42) benign(0.025) TCGA-CH-5772-01 4 46099328 46099328 G A GABRG1 Missense_Mutation p.T48M 0.04 deleterious(0.01) benign(0.004) TCGA-CH-5772-01 4 69693267 69693267 G A UGT2B10 Splice_Site p.X436_splice 0.05 TCGA-CH-5772-01 5 100147519 100147519 A G ST8SIA4 3'UTR 0.06 TCGA-CH-5772-01 5 140720422 140720422 G A PCDHGA2 Silent p.T628T 0.08 TCGA-CH-5772-01 5 140794395 140794395 G A PCDHGA10 Silent p.S551S 0.03 TCGA-CH-5772-01 5 150928993 150928993 T C FAT2 Missense_Mutation p.H1551R 0.07 probably_damaging(0.912) TCGA-CH-5772-01 6 66205045 66205045 T C EYS Missense_Mutation p.I87V 0.03 tolerated_low_confidence(0.64) benign(0.047) TCGA-CH-5772-01 7 138603105 138603105 C G KIAA1549 Missense_Mutation p.A423P 0.40 tolerated(0.15) benign(0.248) TCGA-CH-5772-01 7 148979201 148979201 T A ZNF783 Missense_Mutation p.Y470N 0.15 tolerated(0.09) probably_damaging(0.959) TCGA-CH-5772-01 7 1855777 1855777 G A MAD1L1 Missense_Mutation p.R696C 0.06 deleterious(0) possibly_damaging(0.849) TCGA-CH-5772-01 7 43484982 43484982 C T HECW1 Silent p.D737D 0.39 TCGA-CH-5772-01 8 73480433 73480433 A T KCNB2 Missense_Mutation p.E155V 0.04 deleterious(0.05) possibly_damaging(0.688) TCGA-CH-5772-01 8 97156855 97156855 G A GDF6 Missense_Mutation p.A435V 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-CH-5772-01 9 130630299 130630299 G A AK1 Silent p.D191D 0.09 TCGA-CH-5772-01 9 135866396 135866396 G A GFI1B Missense_Mutation p.D318N 0.21 deleterious(0) probably_damaging(0.999) TCGA-CH-5772-01 9 15744747 15744747 A G CCDC171 Silent p.G842G 0.37 TCGA-CH-5772-01 9 34971518 34971518 G A KIAA1045 Missense_Mutation p.G75S 0.39 tolerated(0.61) benign(0) TCGA-CH-5772-01 9 90396047 90396047 C G CTSL3P Intron 0.11 TCGA-CH-5772-01 X 155003970 155003970 T A SPRY3 Missense_Mutation p.I146N 0.03 deleterious(0.03) possibly_damaging(0.536) TCGA-CH-5772-01 X 24516991 24516991 C T PDK3 Silent p.S98S 0.67 TCGA-CH-5772-01 X 70463718 70463722 TTCAT GTC ZMYM3 Nonsense_Mutation p.Y1130* 0.08 TCGA-CH-5772-01 X 77913571 77913571 G A ZCCHC5 Missense_Mutation p.A116V 0.09 deleterious_low_confidence(0.02) benign(0) TCGA-CH-5772-01 X 99662413 99662413 G A PCDH19 Nonsense_Mutation p.R395* 0.05 TCGA-CH-5788-01 11 33373268 33373268 T C HIPK3 Silent p.H974H 0.23 TCGA-CH-5788-01 11 61114098 61114098 A G DAK 3'UTR 0.50 TCGA-CH-5788-01 12 49176734 49176734 G A ADCY6 Missense_Mutation p.L162F 0.41 deleterious(0.05) possibly_damaging(0.649) TCGA-CH-5788-01 12 52908651 52908651 G T KRT5 3'UTR 0.28 TCGA-CH-5788-01 12 53804756 53804756 G A SP1 Missense_Mutation p.R697K 0.42 deleterious(0.01) possibly_damaging(0.694) TCGA-CH-5788-01 12 54903701 54903701 C T NCKAP1L Missense_Mutation p.R223C 0.04 deleterious(0) probably_damaging(1) TCGA-CH-5788-01 12 80658832 80658832 G T OTOGL Missense_Mutation p.C680F 0.39 deleterious(0) probably_damaging(0.994) TCGA-CH-5788-01 14 21498804 21498804 G A TPPP2 Missense_Mutation p.G22S 0.43 deleterious(0.03) possibly_damaging(0.851) TCGA-CH-5788-01 14 34419426 34419426 G A EGLN3 Intron 0.38 TCGA-CH-5788-01 14 34419427 34419427 C A EGLN3 Intron 0.38 TCGA-CH-5788-01 15 55964737 55964737 C T PRTG Silent p.Q649Q 0.34 TCGA-CH-5788-01 15 65780073 65780073 T C DPP8 Missense_Mutation p.M320V 0.07 tolerated(0.31) benign(0.071) TCGA-CH-5788-01 15 72193592 72193592 G T MYO9A Missense_Mutation p.F1030L 0.35 tolerated(0.09) benign(0.258) TCGA-CH-5788-01 15 91428783 91428783 C A FES Missense_Mutation p.Q119K 0.40 tolerated(0.32) benign(0.12) TCGA-CH-5788-01 15 93162648 93162648 A G FAM174B 3'UTR 0.40 TCGA-CH-5788-01 16 3778253 3778253 C T CREBBP Silent p.A2265A 0.47 TCGA-CH-5788-01 16 67305047 67305047 C T SLC9A5 Silent p.T875T 0.11 TCGA-CH-5788-01 17 27229944 27229944 C T DHRS13 Missense_Mutation p.G7S 0.23 tolerated(0.46) unknown(0) TCGA-CH-5788-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-CH-5788-01 17 56083187 56083187 T C SRSF1 Missense_Mutation p.D176G 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-CH-5788-01 19 14266983 14266983 G T LPHN1 Missense_Mutation p.H1027N 0.17 deleterious(0.03) probably_damaging(0.909) TCGA-CH-5788-01 19 15756624 15756624 C A CYP4F3 Silent p.I98I 0.38 TCGA-CH-5788-01 19 40420067 40420067 C T FCGBP Missense_Mutation p.G976D 0.38 probably_damaging(1) TCGA-CH-5788-01 19 45858059 45858059 G A ERCC2 Missense_Mutation p.P532S 0.32 deleterious(0) probably_damaging(0.982) TCGA-CH-5788-01 19 57065114 57065114 G A ZFP28 Silent p.G320G 0.04 TCGA-CH-5788-01 1 103544235 103544235 G A COL11A1 Missense_Mutation p.T156I 0.42 probably_damaging(0.978) TCGA-CH-5788-01 1 156830913 156830913 C T NTRK1 Missense_Mutation p.P63S 0.38 tolerated(0.33) benign(0.01) TCGA-CH-5788-01 1 200587742 200587742 T G KIF14 Missense_Mutation p.K37T 0.22 tolerated(0.09) benign(0.393) TCGA-CH-5788-01 1 202245638 202245638 C T LGR6 Silent p.S211S 0.33 TCGA-CH-5788-01 1 54605390 54605390 C T CDCP2 Missense_Mutation p.E385K 0.51 tolerated(0.16) benign(0.002) TCGA-CH-5788-01 22 36960764 36960764 G A CACNG2 Silent p.I202I 0.41 TCGA-CH-5788-01 2 234756069 234756069 C G HJURP Missense_Mutation p.E126Q 0.05 tolerated(0.11) possibly_damaging(0.515) TCGA-CH-5788-01 2 74072296 74072296 A G STAMBP Silent p.K94K 0.43 TCGA-CH-5788-01 3 135870947 135870947 T A MSL2 Missense_Mutation p.D259V 0.27 deleterious(0) probably_damaging(0.976) TCGA-CH-5788-01 3 195713458 195713458 T C SDHAP1 RNA 0.17 TCGA-CH-5788-01 3 38622674 38622674 G A SCN5A Silent p.P992P 0.39 TCGA-CH-5788-01 3 50655021 50655042 CAGGGGGGCCCTGTGCCCCCGC - MAPKAPK3 Frame_Shift_Del p.G10Lfs*23 0.51 TCGA-CH-5788-01 4 128843022 128843022 C G MFSD8 Missense_Mutation p.Q365H 0.33 tolerated(0.05) probably_damaging(0.992) TCGA-CH-5788-01 4 6377648 6377648 G C PPP2R2C Missense_Mutation p.I115M 0.04 deleterious(0) possibly_damaging(0.617) TCGA-CH-5788-01 5 140553130 140553130 C T PCDHB7 Silent p.N238N 0.06 TCGA-CH-5788-01 5 162868107 162868107 T A CCNG1 Nonsense_Mutation p.C96* 0.41 TCGA-CH-5788-01 5 98192174 98192174 C T CHD1 Silent p.Q1681Q 0.71 TCGA-CH-5788-01 5 98192340 98192340 C G CHD1 Missense_Mutation p.R1626T 0.80 deleterious_low_confidence(0.02) benign(0.002) TCGA-CH-5788-01 7 20778650 20778650 C T ABCB5 Missense_Mutation p.T971M 0.20 deleterious(0) possibly_damaging(0.891) TCGA-CH-5788-01 7 40039015 40039015 C G CDK13 Missense_Mutation p.R700G 0.28 deleterious(0) possibly_damaging(0.9) TCGA-CH-5788-01 7 56007656 56007656 G T ZNF713 Missense_Mutation p.C417F 0.54 deleterious(0.01) benign(0.355) TCGA-CH-5788-01 7 82996880 82996880 G C SEMA3E 3'UTR 0.08 TCGA-CH-5788-01 7 96339204 96339204 A T SHFM1 5'Flank 0.48 TCGA-CH-5788-01 8 128428780 128428780 A C POU5F1B Silent p.A223A 0.49 TCGA-CH-5788-01 8 23290499 23290499 C T ENTPD4 Silent p.S597S 0.40 TCGA-CH-5788-01 8 72963064 72963064 G A TRPA1 Silent p.G618G 0.33 TCGA-CH-5788-01 9 136573417 136573417 G T SARDH Missense_Mutation p.L488M 0.13 deleterious(0.02) possibly_damaging(0.897) TCGA-CH-5788-01 X 154490041 154490041 C G RAB39B 3'UTR 0.28 TCGA-CH-5789-01 10 56287578 56287578 G T PCDH15 Silent p.R51R 0.04 TCGA-CH-5789-01 19 9075833 9075833 C T MUC16 Silent p.E3871E 0.07 TCGA-CH-5789-01 1 237801684 237801684 C T RYR2 Silent p.L2274L 0.03 TCGA-CH-5789-01 21 46387079 46387079 C A FAM207A Missense_Mutation p.S161R 0.07 tolerated(0.33) benign(0.011) TCGA-CH-5789-01 2 33172887 33172887 T C LTBP1 Splice_Site p.X165_splice 0.17 TCGA-CH-5789-01 6 89974189 89974189 G A GABRR2 Missense_Mutation p.A343V 0.05 deleterious(0) probably_damaging(0.999) TCGA-CH-5789-01 7 148892653 148892653 C G ZNF282 5'UTR 0.12 TCGA-CH-5789-01 7 92147136 92147136 G A PEX1 Silent p.N231N 0.04 TCGA-CH-5789-01 X 73066367 73066367 T C XIST RNA 0.04 TCGA-CH-5790-01 11 104897573 104897573 C T CASP1 Missense_Mutation p.R371H 0.06 tolerated(0.05) possibly_damaging(0.845) TCGA-CH-5790-01 11 125525250 125525250 T C CHEK1 3'UTR 0.10 TCGA-CH-5790-01 11 20119232 20119232 A G NAV2 Missense_Mutation p.E2100G 0.05 deleterious(0) probably_damaging(0.995) TCGA-CH-5790-01 11 6898608 6898608 G A OR10A4 Missense_Mutation p.A244T 0.08 deleterious(0) benign(0.009) TCGA-CH-5790-01 12 46594935 46594935 C T SLC38A1 Missense_Mutation p.A317T 0.32 deleterious(0.04) possibly_damaging(0.769) TCGA-CH-5790-01 12 6950751 6950751 A G GNB3 Missense_Mutation p.D20G 0.29 tolerated(0.11) benign(0.187) TCGA-CH-5790-01 14 24572967 24572967 A G PCK2 Missense_Mutation p.I573V 0.39 tolerated(0.17) benign(0.014) TCGA-CH-5790-01 14 75515946 75515946 G C MLH3 Missense_Mutation p.T138S 0.05 tolerated(0.61) benign(0.014) TCGA-CH-5790-01 14 94420665 94420665 C T ASB2 Missense_Mutation p.R159Q 0.05 tolerated(0.38) benign(0.002) TCGA-CH-5790-01 16 4016225 4016225 G A ADCY9 Missense_Mutation p.R1205C 0.04 deleterious(0.04) possibly_damaging(0.604) TCGA-CH-5790-01 18 8113637 8113637 C A PTPRM Silent p.L670L 0.45 TCGA-CH-5790-01 19 1507384 1507384 G A ADAMTSL5 Missense_Mutation p.R237C 0.11 deleterious(0) possibly_damaging(0.901) TCGA-CH-5790-01 19 2039536 2039536 G A MKNK2 3'UTR 0.47 TCGA-CH-5790-01 19 33584366 33584366 C T GPATCH1 Silent p.A132A 0.35 TCGA-CH-5790-01 19 42259586 42259586 C A CEACAM6 Missense_Mutation p.P14T 0.05 tolerated(0.5) benign(0.125) TCGA-CH-5790-01 1 109369914 109369914 C T AKNAD1 Missense_Mutation p.V617M 0.08 tolerated(1) benign(0.004) TCGA-CH-5790-01 1 142803319 142803319 A C RP11-423O2.5 RNA 0.15 TCGA-CH-5790-01 1 2415902 2415902 G A PLCH2 Missense_Mutation p.D194N 0.36 tolerated(0.12) probably_damaging(0.913) TCGA-CH-5790-01 2 27258872 27258872 G A TMEM214 Silent p.Q224Q 0.33 TCGA-CH-5790-01 2 90229249 90229249 C A IGKV1D-42 Missense_Mutation p.D23E 0.71 tolerated(0.13) possibly_damaging(0.503) TCGA-CH-5790-01 3 48624753 48624753 C T COL7A1 Silent p.P1003P 0.09 TCGA-CH-5790-01 3 51746689 51746689 C T GRM2 Silent p.G217G 0.04 TCGA-CH-5790-01 6 146480672 146480672 C T GRM1 Nonsense_Mutation p.R297* 0.06 TCGA-CH-5790-01 6 31730338 31730338 T G MSH5 3'UTR 0.06 TCGA-CH-5790-01 7 142021350 142021350 C T TRBV5-1 Silent p.C110C 0.27 TCGA-CH-5790-01 7 22862413 22862413 G A TOMM7 5'UTR 0.05 TCGA-CH-5790-01 8 121823678 121823678 G A SNTB1 Missense_Mutation p.P136S 0.05 deleterious(0) probably_damaging(1) TCGA-CH-5790-01 8 73848458 73848458 G A KCNB2 Missense_Mutation p.V290M 0.07 deleterious(0.02) possibly_damaging(0.884) TCGA-CH-5790-01 9 114840901 114840901 C T SUSD1 Missense_Mutation p.R557H 0.09 tolerated(1) benign(0) TCGA-CH-5790-01 X 71787745 71787745 G C HDAC8 Missense_Mutation p.A144G 0.08 deleterious(0.04) benign(0.289) TCGA-CH-5791-01 10 101455823 101455823 C T ENTPD7 Silent p.N318N 0.06 TCGA-CH-5791-01 10 102896459 102896459 C G TLX1 Missense_Mutation p.A261G 0.06 deleterious(0) probably_damaging(0.989) TCGA-CH-5791-01 10 89690802 89690802 G A PTEN Splice_Site p.X70_splice 0.58 TCGA-CH-5791-01 10 99642555 99642555 C A CRTAC1 Missense_Mutation p.G555C 0.33 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-CH-5791-01 11 117052139 117052139 G C SIDT2 Missense_Mutation p.G64A 0.10 tolerated(1) probably_damaging(0.999) TCGA-CH-5791-01 11 124857794 124857794 C T CCDC15 Nonsense_Mutation p.Q558* 0.03 TCGA-CH-5791-01 11 20101630 20101630 G T NAV2 Missense_Mutation p.A1790S 0.24 tolerated(0.23) benign(0.003) TCGA-CH-5791-01 11 59633903 59633903 A G TCN1 Missense_Mutation p.L14P 0.31 deleterious(0.01) probably_damaging(0.985) TCGA-CH-5791-01 11 62378665 62378665 G A EML3 Missense_Mutation p.P116S 0.12 tolerated(0.08) benign(0.011) TCGA-CH-5791-01 11 95712225 95712225 G A MAML2 Missense_Mutation p.P1120S 0.17 unknown(0) TCGA-CH-5791-01 12 101433785 101433785 G A ANO4 Missense_Mutation p.R282Q 0.29 deleterious(0) probably_damaging(0.964) TCGA-CH-5791-01 12 109290787 109290787 C T DAO Silent p.D206D 0.37 TCGA-CH-5791-01 12 120615277 120615277 G A GCN1L1 Silent p.L271L 0.21 TCGA-CH-5791-01 12 122691206 122691220 TATCCGCAGCACGTG GCCGCACGTGCT B3GNT4 In_Frame_Del p.I137_W141delinsPHVL 0.26 TCGA-CH-5791-01 12 131593399 131593399 G A GPR133 Missense_Mutation p.R673H 0.13 tolerated(0.56) benign(0.009) TCGA-CH-5791-01 12 48737263 48737263 C A ZNF641 Silent p.G270G 0.05 TCGA-CH-5791-01 14 21971365 21971365 A C METTL3 Missense_Mutation p.I225R 0.30 deleterious(0) probably_damaging(0.979) TCGA-CH-5791-01 16 1831441 1831441 A G SPSB3 Missense_Mutation p.L15P 0.42 deleterious_low_confidence(0.03) probably_damaging(0.927) TCGA-CH-5791-01 17 3992020 3992020 C T ZZEF1 Silent p.T731T 0.12 TCGA-CH-5791-01 18 12340252 12340252 G T AFG3L2 Missense_Mutation p.T643K 0.03 deleterious(0) probably_damaging(0.996) TCGA-CH-5791-01 19 12637186 12637186 T C ZNF564 3'UTR 0.05 TCGA-CH-5791-01 19 18001748 18001748 C T SLC5A5 Missense_Mutation p.R569W 0.34 deleterious(0.02) benign(0.006) TCGA-CH-5791-01 1 152484310 152484310 C G LCE5A Missense_Mutation p.S100R 0.23 tolerated_low_confidence(0.36) unknown(0) TCGA-CH-5791-01 1 196971637 196971637 G A CFHR5 Silent p.P391P 0.08 TCGA-CH-5791-01 20 3672817 3672817 G A SIGLEC1 Missense_Mutation p.R1355W 0.28 deleterious(0.02) benign(0.021) TCGA-CH-5791-01 21 18924180 18924180 G A CXADR Silent p.T108T 0.12 TCGA-CH-5791-01 2 141460073 141460073 G T LRP1B Missense_Mutation p.R2025S 0.38 benign(0.006) TCGA-CH-5791-01 2 204304794 204304794 A G RAPH1 Missense_Mutation p.V1040A 0.34 unknown(0) TCGA-CH-5791-01 2 229890759 229890759 T A PID1 Silent p.P112P 0.11 TCGA-CH-5791-01 2 29354154 29354154 C T CLIP4 Missense_Mutation p.S55L 0.29 tolerated(0.06) benign(0.15) TCGA-CH-5791-01 2 37441066 37441066 C T CEBPZ Missense_Mutation p.R829Q 0.17 tolerated(0.1) benign(0.01) TCGA-CH-5791-01 3 187447645 187447645 C T BCL6 Missense_Mutation p.S183N 0.32 tolerated(1) benign(0.004) TCGA-CH-5791-01 3 99568295 99568295 T G FILIP1L Missense_Mutation p.D742A 0.02 deleterious(0) probably_damaging(1) TCGA-CH-5791-01 4 42895345 42895345 C T GRXCR1 Missense_Mutation p.A21V 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-CH-5791-01 4 76813087 76813087 C T PPEF2 Missense_Mutation p.V34M 0.22 tolerated(0.54) benign(0.008) TCGA-CH-5791-01 4 79343065 79343065 C T FRAS1 Missense_Mutation p.T1530M 0.28 probably_damaging(0.948) TCGA-CH-5791-01 5 140751730 140751739 AGGTGGTGGC - PCDHGB3 Frame_Shift_Del p.K590Rfs*70 0.40 TCGA-CH-5791-01 6 161139389 161139389 G A PLG Missense_Mutation p.R284H 0.18 deleterious(0.01) probably_damaging(0.909) TCGA-CH-5791-01 6 43589227 43589227 G A GTPBP2 3'UTR 0.20 TCGA-CH-5791-01 7 149526028 149526028 G A SSPO RNA 0.57 TCGA-CH-5791-01 7 29727194 29727194 A G DPY19L2P3 Intron 0.33 TCGA-CH-5791-01 7 41739653 41739653 A T INHBA Missense_Mutation p.I107N 0.02 tolerated(0.49) benign(0.303) TCGA-CH-5791-01 7 99110202 99110202 C G ZKSCAN5 Missense_Mutation p.L181V 0.36 tolerated(0.05) benign(0.002) TCGA-CH-5791-01 8 109001381 109001383 GAA - RSPO2 In_Frame_Del p.F62del 0.38 TCGA-CH-5791-01 8 133196585 133196585 G A KCNQ3 Silent p.A169A 0.37 TCGA-CH-5791-01 8 77764257 77764257 C T ZFHX4 Silent p.H1700H 0.20 TCGA-CH-5791-01 9 106889711 106889711 G A SMC2 Missense_Mutation p.D914N 0.39 tolerated(0.3) benign(0.026) TCGA-CH-5791-01 9 138837764 138837764 G C UBAC1 Missense_Mutation p.N208K 0.23 tolerated(0.32) benign(0.099) TCGA-CH-5791-01 9 35076446 35076446 C A FANCG Missense_Mutation p.R353S 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-CH-5791-01 X 18842131 18842131 A G PPEF1 Missense_Mutation p.N531S 0.64 tolerated(0.89) benign(0.002) TCGA-CH-5792-01 10 75565719 75565719 G A NDST2 Missense_Mutation p.S501F 0.20 tolerated(0.11) possibly_damaging(0.654) TCGA-CH-5792-01 12 104487302 104487302 C T HCFC2 Missense_Mutation p.H475Y 0.14 tolerated(0.15) benign(0.197) TCGA-CH-5792-01 12 7640278 7640278 A G CD163 Intron 0.21 TCGA-CH-5792-01 13 27847649 27847649 C G RASL11A 3'UTR 0.09 TCGA-CH-5792-01 14 107078542 107078542 C A IGHV1-58 Missense_Mutation p.G61V 0.12 probably_damaging(0.991) TCGA-CH-5792-01 14 24877295 24877295 G A NYNRIN Missense_Mutation p.R140Q 0.29 tolerated_low_confidence(0.05) benign(0.116) TCGA-CH-5792-01 14 81993164 81993164 C T SEL1L Missense_Mutation p.E85K 0.03 deleterious_low_confidence(0) benign(0.002) TCGA-CH-5792-01 14 81993233 81993233 C T SEL1L Missense_Mutation p.D62N 0.06 tolerated_low_confidence(0.15) benign(0.069) TCGA-CH-5792-01 15 99482581 99482581 A G IGF1R Missense_Mutation p.K1150R 0.18 deleterious(0) probably_damaging(0.996) TCGA-CH-5792-01 16 81095725 81095725 T C C16orf46 Missense_Mutation p.T77A 0.21 tolerated(0.38) benign(0.001) TCGA-CH-5792-01 17 34147368 34147368 C T TAF15 Nonsense_Mutation p.Q73* 0.18 TCGA-CH-5792-01 17 3595042 3595042 G - P2RX5 Frame_Shift_Del p.L62Cfs*46 0.16 TCGA-CH-5792-01 17 40282379 40282379 C T RAB5C Missense_Mutation p.E81K 0.14 tolerated(0.08) benign(0.371) TCGA-CH-5792-01 17 5035642 5035642 G A USP6 Intron 0.13 TCGA-CH-5792-01 17 72527561 72527561 G - CD300LB Frame_Shift_Del p.Q14Rfs*48 0.12 TCGA-CH-5792-01 17 74732291 74732291 C A SRSF2 Silent p.S206S 0.03 TCGA-CH-5792-01 18 19116092 19116092 G C ESCO1 Missense_Mutation p.L700V 0.20 deleterious(0.03) benign(0.443) TCGA-CH-5792-01 19 10602358 10602358 G A KEAP1 Missense_Mutation p.A407V 0.22 deleterious(0.01) possibly_damaging(0.472) TCGA-CH-5792-01 19 50662822 50662822 T C IZUMO2 Missense_Mutation p.E108G 0.09 deleterious(0) possibly_damaging(0.607) TCGA-CH-5792-01 19 56244522 56244522 G T NLRP9 Missense_Mutation p.F225L 0.09 tolerated(0.1) benign(0.128) TCGA-CH-5792-01 1 109648673 109648673 C T C1orf194 Missense_Mutation p.D151N 0.12 tolerated(0.09) possibly_damaging(0.778) TCGA-CH-5792-01 1 158576873 158576873 C T OR10Z1 Silent p.T215T 0.09 TCGA-CH-5792-01 1 182550489 182550489 G A RNASEL Silent p.R592R 0.20 TCGA-CH-5792-01 1 203682293 203682293 G A ATP2B4 Missense_Mutation p.V738I 0.18 tolerated(0.96) possibly_damaging(0.54) TCGA-CH-5792-01 1 248308779 248308779 C T OR2M5 Silent p.S110S 0.22 TCGA-CH-5792-01 1 64089265 64089265 A G PGM1 Missense_Mutation p.Y45C 0.20 tolerated(0.05) benign(0.003) TCGA-CH-5792-01 20 1961214 1961214 G A PDYN Missense_Mutation p.R174C 0.04 deleterious(0) probably_damaging(1) TCGA-CH-5792-01 20 31424469 31424469 A G MAPRE1 Silent p.G99G 0.16 TCGA-CH-5792-01 2 10188711 10188711 G A KLF11 Missense_Mutation p.R416H 0.25 deleterious(0) probably_damaging(0.999) TCGA-CH-5792-01 2 187693166 187693166 A T ZSWIM2 Missense_Mutation p.L483I 0.16 tolerated(0.11) possibly_damaging(0.619) TCGA-CH-5792-01 2 227661593 227661593 G - IRS1 Frame_Shift_Del p.P621Qfs*15 0.20 TCGA-CH-5792-01 2 48915655 48915655 A T LHCGR Nonsense_Mutation p.Y427* 0.10 TCGA-CH-5792-01 2 88423942 88423942 G A FABP1 Intron 0.12 TCGA-CH-5792-01 3 49928943 49928943 C T MST1R Silent p.P1141P 0.08 TCGA-CH-5792-01 3 73432865 73432865 C T PDZRN3 Missense_Mutation p.R951Q 0.11 tolerated(0.1) benign(0.207) TCGA-CH-5792-01 5 79029070 79029070 A G CMYA5 Silent p.K1494K 0.06 TCGA-CH-5792-01 5 94749818 94749818 C T FAM81B Missense_Mutation p.S154L 0.18 tolerated(0.22) benign(0.041) TCGA-CH-5792-01 7 100807837 100807837 G A VGF Silent p.P96P 0.14 TCGA-CH-5792-01 7 154667767 154667767 C T DPP6 Missense_Mutation p.R679W 0.19 deleterious(0) probably_damaging(0.922) TCGA-CH-5792-01 7 30491366 30491366 G A NOD1 Missense_Mutation p.T556M 0.22 tolerated(0.1) benign(0.046) TCGA-CH-5792-01 8 119945484 119945484 A C TNFRSF11B Missense_Mutation p.L29R 0.17 tolerated(0.75) benign(0.323) TCGA-CH-5792-01 8 3889497 3889497 G A CSMD1 Silent p.H180H 0.18 TCGA-CH-5792-01 9 74863311 74863311 C A GDA Intron 0.28 TCGA-CH-5792-01 9 94172250 94172250 G C NFIL3 Nonsense_Mutation p.S256* 0.12 TCGA-CH-5792-01 X 155252727 155252727 T C WASH6P RNA 0.08 TCGA-CH-5792-01 X 16859875 16859875 G C TXLNG Missense_Mutation p.E525Q 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.726) TCGA-CH-5792-01 X 48674947 48674947 T G HDAC6 Missense_Mutation p.F566L 0.39 deleterious(0.01) possibly_damaging(0.685) TCGA-CH-5792-01 X 48674948 48674948 G C HDAC6 Missense_Mutation p.D567H 0.41 deleterious(0.01) possibly_damaging(0.905) TCGA-CH-5794-01 10 87628819 87628819 C T GRID1 Missense_Mutation p.R300H 0.42 deleterious(0.02) possibly_damaging(0.9) TCGA-CH-5794-01 11 47198145 47198145 C T ARFGAP2 Missense_Mutation p.S38N 0.05 deleterious(0) probably_damaging(0.999) TCGA-CH-5794-01 11 68682435 68682435 C T IGHMBP2 Missense_Mutation p.R286W 0.22 deleterious(0) probably_damaging(0.978) TCGA-CH-5794-01 11 75152348 75152349 - G GDPD5 Frame_Shift_Ins p.A445Rfs*32 0.22 TCGA-CH-5794-01 12 110765384 110765384 T A ATP2A2 Silent p.A219A 0.29 TCGA-CH-5794-01 12 50041517 50041519 GGG - FMNL3 In_Frame_Del p.F915_P916delinsL 0.18 TCGA-CH-5794-01 13 32527029 32527029 C A EEF1DP3 RNA 0.30 TCGA-CH-5794-01 14 26917506 26917506 T A NOVA1 Missense_Mutation p.T395S 0.26 tolerated(0.21) benign(0.007) TCGA-CH-5794-01 14 71485847 71485847 G A PCNX Missense_Mutation p.V1040I 0.31 tolerated(0.08) possibly_damaging(0.903) TCGA-CH-5794-01 15 100341319 100341319 C T DNM1P46 RNA 0.05 TCGA-CH-5794-01 16 15131825 15131825 C T NTAN1 3'UTR 0.34 TCGA-CH-5794-01 19 39965235 39965235 G T SUPT5H Silent p.T967T 0.06 TCGA-CH-5794-01 19 52919410 52919410 G T ZNF528 Missense_Mutation p.K435N 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-CH-5794-01 19 9965490 9965490 C T OLFM2 Missense_Mutation p.R246H 0.20 deleterious(0.03) possibly_damaging(0.879) TCGA-CH-5794-01 1 158585065 158585065 G A SPTA1 Silent p.D2243D 0.28 TCGA-CH-5794-01 1 206906142 206906142 C T MAPKAPK2 3'UTR 0.23 TCGA-CH-5794-01 1 65310466 65310466 C T JAK1 Missense_Mutation p.G741D 0.35 deleterious(0) probably_damaging(0.943) TCGA-CH-5794-01 21 15352131 15352131 G C ANKRD20A11P RNA 0.38 TCGA-CH-5794-01 22 30035110 30035110 C T NF2 Missense_Mutation p.P91L 0.28 deleterious(0.02) possibly_damaging(0.735) TCGA-CH-5794-01 22 32794016 32794016 A G RTCB Silent p.A242A 0.25 TCGA-CH-5794-01 22 42059704 42059704 C T XRCC6 Missense_Mutation p.T572M 0.21 deleterious(0.03) benign(0.093) TCGA-CH-5794-01 2 182376434 182376434 T C ITGA4 Silent p.F618F 0.26 TCGA-CH-5794-01 2 228389506 228389506 A C AGFG1 Missense_Mutation p.Q190P 0.23 tolerated(0.21) benign(0) TCGA-CH-5794-01 2 27850383 27850383 T C CCDC121 Missense_Mutation p.N257S 0.32 deleterious(0.02) benign(0.039) TCGA-CH-5794-01 2 9725321 9725321 G A YWHAQ 3'UTR 0.06 TCGA-CH-5794-01 3 11744501 11744501 G A VGLL4 Missense_Mutation p.T3M 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-CH-5794-01 3 49755885 49755885 G A AMIGO3 Silent p.A338A 0.21 TCGA-CH-5794-01 4 125591185 125591185 G A ANKRD50 Missense_Mutation p.R1083C 0.04 deleterious(0) probably_damaging(0.995) TCGA-CH-5794-01 5 101813486 101813486 G A SLCO6A1 Silent p.F232F 0.26 TCGA-CH-5794-01 5 128957923 128957923 A C ADAMTS19 Missense_Mutation p.N545T 0.26 deleterious(0.01) benign(0.232) TCGA-CH-5794-01 5 34826505 34826505 C G RAI14 Nonsense_Mutation p.S910* 0.27 TCGA-CH-5794-01 5 45262494 45262494 C T HCN1 Silent p.P734P 0.28 TCGA-CH-5794-01 6 1624710 1624710 G A GMDS Silent p.F351F 0.11 TCGA-CH-5794-01 6 27799301 27799301 G C HIST1H4K Missense_Mutation p.S2C 0.18 deleterious_low_confidence(0.03) benign(0.184) TCGA-CH-5794-01 6 55147206 55147206 G A HCRTR2 Missense_Mutation p.S430N 0.29 tolerated_low_confidence(0.48) benign(0.002) TCGA-CH-5794-01 7 100172836 100172836 G A LRCH4 Missense_Mutation p.A649V 0.29 tolerated(0.07) benign(0.141) TCGA-CH-5794-01 7 99686977 99686977 C G COPS6 Silent p.V47V 0.28 TCGA-CH-5794-01 8 23538909 23538909 T C NKX3-1 Missense_Mutation p.Y177C 0.24 deleterious(0) probably_damaging(0.998) TCGA-CH-5794-01 9 104192139 104192139 G A ALDOB Silent p.I74I 0.27 TCGA-CH-5794-01 9 133799131 133799131 C A FIBCD1 Silent p.T283T 0.31 TCGA-CH-5794-01 X 47837103 47837103 G T ZNF182 Missense_Mutation p.T128K 0.09 tolerated(0.94) benign(0.033) TCGA-EJ-5494-01 10 35351967 35351967 G A CUL2 Missense_Mutation p.A67V 0.08 deleterious(0) probably_damaging(0.994) TCGA-EJ-5494-01 11 64572284 64572284 C T MEN1 Missense_Mutation p.R457Q 0.15 deleterious(0) probably_damaging(1) TCGA-EJ-5494-01 12 111652018 111652018 C T CUX2 Silent p.S26S 0.05 TCGA-EJ-5494-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.04 deleterious(0.03) probably_damaging(0.984) TCGA-EJ-5494-01 12 130935764 130935764 G A RIMBP2 Silent p.S143S 0.06 TCGA-EJ-5494-01 12 53071120 53071120 C T KRT1 Missense_Mutation p.E370K 0.07 deleterious(0) probably_damaging(0.998) TCGA-EJ-5494-01 14 38060569 38060569 G T FOXA1 3'UTR 0.05 TCGA-EJ-5494-01 14 38060572 38060572 A C FOXA1 Nonstop_Mutation p.*473Eext*34 0.04 TCGA-EJ-5494-01 14 38060721 38060721 G - FOXA1 Frame_Shift_Del p.A423Dfs*17 0.15 TCGA-EJ-5494-01 16 51173899 51173899 G A SALL1 Missense_Mutation p.T745M 0.06 deleterious(0) probably_damaging(1) TCGA-EJ-5494-01 17 1939852 1939852 C T DPH1 Missense_Mutation p.R149W 0.07 deleterious(0) possibly_damaging(0.893) TCGA-EJ-5494-01 17 40342260 40342260 G A GHDC Silent p.Y439Y 0.10 TCGA-EJ-5494-01 17 5035597 5035597 G T USP6 Intron 0.06 TCGA-EJ-5494-01 18 21426327 21426327 C T LAMA3 Silent p.G1262G 0.03 TCGA-EJ-5494-01 19 13423526 13423526 G A CACNA1A Missense_Mutation p.T542M 0.07 probably_damaging(0.968) TCGA-EJ-5494-01 1 157551405 157551405 C T FCRL4 Missense_Mutation p.A389T 0.09 tolerated(0.3) benign(0.008) TCGA-EJ-5494-01 1 222717002 222717002 C T HHIPL2 Missense_Mutation p.R284H 0.03 tolerated(0.3) benign(0.025) TCGA-EJ-5494-01 20 33875234 33875234 G A FAM83C Missense_Mutation p.R450W 0.09 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-EJ-5494-01 20 34091637 34091637 C G CEP250 Missense_Mutation p.Q1814E 0.05 benign(0.209) TCGA-EJ-5494-01 2 170930058 170930058 A G UBR3 Missense_Mutation p.I1714V 0.39 tolerated(0.88) benign(0.002) TCGA-EJ-5494-01 2 219028938 219028938 G A CXCR1 Missense_Mutation p.R333C 0.07 deleterious(0) possibly_damaging(0.836) TCGA-EJ-5494-01 3 41266098 41266098 A T CTNNB1 Missense_Mutation p.D32V 0.08 deleterious(0) probably_damaging(0.988) TCGA-EJ-5494-01 3 59999869 59999869 A G FHIT Missense_Mutation p.V38A 0.06 deleterious(0) probably_damaging(0.972) TCGA-EJ-5494-01 4 100544012 100544012 C T MTTP 3'UTR 0.30 TCGA-EJ-5494-01 4 41621299 41621299 G A LIMCH1 Silent p.E259E 0.06 TCGA-EJ-5494-01 4 52861922 52861922 G A LRRC66 Silent p.N422N 0.06 TCGA-EJ-5494-01 5 140188929 140188929 C T PCDHA4 Silent p.T719T 0.06 TCGA-EJ-5494-01 5 140554610 140554610 C T PCDHB7 Nonsense_Mutation p.R732* 0.04 TCGA-EJ-5494-01 6 110948346 110948346 T C CDK19 Missense_Mutation p.I217V 0.34 tolerated(0.12) possibly_damaging(0.679) TCGA-EJ-5494-01 6 50740477 50740477 C T TFAP2D Missense_Mutation p.A420V 0.17 tolerated(0.32) benign(0.001) TCGA-EJ-5494-01 6 85446536 85446536 G A TBX18 Missense_Mutation p.T564M 0.08 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-EJ-5494-01 7 31378446 31378446 A G NEUROD6 Missense_Mutation p.L146P 0.30 deleterious(0) probably_damaging(0.973) TCGA-EJ-5494-01 8 86249177 86249177 G A CA1 Silent p.A117A 0.07 TCGA-EJ-5494-01 9 126132707 126132707 C A CRB2 Missense_Mutation p.L459M 0.09 deleterious(0.05) possibly_damaging(0.665) TCGA-EJ-5494-01 9 126132708 126132708 T A CRB2 Missense_Mutation p.L459Q 0.08 deleterious(0.03) possibly_damaging(0.766) TCGA-EJ-5494-01 9 131772101 131772101 T C SH3GLB2 Missense_Mutation p.Y263C 0.41 deleterious(0) probably_damaging(0.991) TCGA-EJ-5494-01 X 102337712 102337712 G A NXF3 Silent p.D252D 0.12 TCGA-EJ-5494-01 X 3242966 3242966 C A MXRA5 Missense_Mutation p.A254S 0.16 tolerated(0.5) benign(0.021) TCGA-EJ-5494-01 X 51150821 51150821 C T CXorf67 Missense_Mutation p.A318V 0.67 tolerated(0.12) benign(0.085) TCGA-EJ-5495-01 10 11908743 11908743 G A PROSER2 Missense_Mutation p.G118R 0.19 tolerated(0.17) benign(0.02) TCGA-EJ-5495-01 10 48389852 48389852 C T RBP3 Silent p.T342T 0.17 TCGA-EJ-5495-01 10 71332506 71332506 G T NEUROG3 Missense_Mutation p.N98K 0.13 deleterious(0) possibly_damaging(0.57) TCGA-EJ-5495-01 11 57182087 57182087 C A SLC43A3 Splice_Site p.X354_splice 0.07 TCGA-EJ-5495-01 11 58979678 58979678 G A MPEG1 Missense_Mutation p.L221F 0.11 deleterious(0) benign(0.305) TCGA-EJ-5495-01 11 65271551 65271551 A G MALAT1 RNA 0.13 TCGA-EJ-5495-01 11 66314404 66314404 T A ZDHHC24 5'Flank 0.26 TCGA-EJ-5495-01 12 114804033 114804033 G T TBX5 Missense_Mutation p.P307T 0.17 deleterious(0.04) benign(0.01) TCGA-EJ-5495-01 12 14993378 14993378 C A ART4 Splice_Site p.X285_splice 0.13 TCGA-EJ-5495-01 12 49443872 49443872 C A KMT2D Nonsense_Mutation p.E1167* 0.16 TCGA-EJ-5495-01 12 66725338 66725338 A G HELB Silent p.V1025V 0.17 TCGA-EJ-5495-01 12 66765694 66765694 G A GRIP1 Missense_Mutation p.S879L 0.17 deleterious(0.04) benign(0.087) TCGA-EJ-5495-01 13 21417991 21417991 A C XPO4 Missense_Mutation p.L164W 0.16 deleterious(0) probably_damaging(0.982) TCGA-EJ-5495-01 13 32910661 32910662 - A BRCA2 Frame_Shift_Ins p.V726Sfs*25 0.22 TCGA-EJ-5495-01 14 102505453 102505453 G T DYNC1H1 Missense_Mutation p.K3774N 0.16 probably_damaging(1) TCGA-EJ-5495-01 14 77302633 77302633 A T C14orf166B Missense_Mutation p.Q158H 0.28 tolerated(0.59) benign(0.005) TCGA-EJ-5495-01 15 22369362 22369362 C A OR4M2 Missense_Mutation p.P263T 0.06 deleterious(0.01) probably_damaging(1) TCGA-EJ-5495-01 15 50792946 50792946 C T USP8 3'UTR 0.19 TCGA-EJ-5495-01 15 77407550 77407566 CAGCAAGGAAATGACCA - PEAK1 Nonsense_Mutation p.C1391* 0.17 TCGA-EJ-5495-01 16 20043984 20043984 G T GPR139 Silent p.I45I 0.08 TCGA-EJ-5495-01 16 27802719 27802719 T G GSG1L Missense_Mutation p.Q323P 0.12 deleterious_low_confidence(0.01) benign(0.425) TCGA-EJ-5495-01 16 27802748 27802748 G C GSG1L Silent p.S313S 0.10 TCGA-EJ-5495-01 16 46712857 46712857 G C VPS35 Missense_Mutation p.Q240E 0.17 tolerated(0.19) benign(0.001) TCGA-EJ-5495-01 17 21826233 21826233 G T FAM27L RNA 0.14 TCGA-EJ-5495-01 17 27934857 27934857 G A ANKRD13B Missense_Mutation p.G71D 0.15 tolerated(0.12) probably_damaging(1) TCGA-EJ-5495-01 17 34174030 34174030 C G TAF15 3'UTR 0.13 TCGA-EJ-5495-01 17 39565994 39565994 T G AC003958.2 RNA 0.25 TCGA-EJ-5495-01 17 60140573 60140573 G A MED13 Silent p.P52P 0.18 TCGA-EJ-5495-01 17 674590 674590 G A GLOD4 Missense_Mutation p.A173V 0.11 tolerated(0.71) benign(0.028) TCGA-EJ-5495-01 17 71165834 71165834 C G SSTR2 Missense_Mutation p.Q126E 0.20 deleterious(0) probably_damaging(0.998) TCGA-EJ-5495-01 17 75085556 75085556 G C SEC14L1 Intron 0.19 TCGA-EJ-5495-01 17 7673934 7673934 G A DNAH2 Silent p.K1386K 0.18 TCGA-EJ-5495-01 17 78449346 78449346 G T NPTX1 Missense_Mutation p.T206N 0.11 tolerated(1) benign(0.024) TCGA-EJ-5495-01 18 24436133 24436133 C G AQP4 3'UTR 0.14 TCGA-EJ-5495-01 18 42530401 42530401 G A SETBP1 Missense_Mutation p.E366K 0.18 tolerated(0.19) probably_damaging(0.994) TCGA-EJ-5495-01 18 5445182 5445182 T G EPB41L3 Missense_Mutation p.K148T 0.15 deleterious(0) probably_damaging(0.978) TCGA-EJ-5495-01 19 3643243 3643243 G A PIP5K1C Silent p.Y549Y 0.18 TCGA-EJ-5495-01 19 41903833 41903833 C A BCKDHA Missense_Mutation p.A34D 0.09 tolerated(0.14) benign(0.001) TCGA-EJ-5495-01 19 42354650 42354650 G C DMRTC2 Missense_Mutation p.Q291H 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-EJ-5495-01 19 42492276 42492276 T C ATP1A3 Missense_Mutation p.K70E 0.15 tolerated(0.54) benign(0.217) TCGA-EJ-5495-01 19 48176998 48176998 C A GLTSCR1 Missense_Mutation p.D21E 0.17 unknown(0) TCGA-EJ-5495-01 19 57931923 57931923 G A ZNF17 Missense_Mutation p.E355K 0.18 tolerated(0.05) probably_damaging(0.979) TCGA-EJ-5495-01 19 8212299 8212299 G A FBN3 Silent p.A22A 0.17 TCGA-EJ-5495-01 1 116519322 116519322 C A SLC22A15 Missense_Mutation p.A25D 0.09 tolerated(0.28) benign(0.143) TCGA-EJ-5495-01 1 155178660 155178660 G A MTX1 Missense_Mutation p.S22N 0.14 tolerated_low_confidence(0.51) benign(0.002) TCGA-EJ-5495-01 1 155448258 155448258 C A ASH1L Missense_Mutation p.S1468I 0.16 deleterious_low_confidence(0) benign(0.405) TCGA-EJ-5495-01 1 172635069 172635069 T G FASLG Missense_Mutation p.S253R 0.14 tolerated(0.66) benign(0.008) TCGA-EJ-5495-01 1 178433459 178433461 CAG - RASAL2 In_Frame_Del p.A1102del 0.20 TCGA-EJ-5495-01 1 208390820 208390820 C T PLXNA2 Missense_Mutation p.E150K 0.03 deleterious(0) probably_damaging(0.933) TCGA-EJ-5495-01 1 21103089 21103089 C G HP1BP3 Splice_Site p.X117_splice 0.16 TCGA-EJ-5495-01 1 22216543 22216543 T A HSPG2 Missense_Mutation p.I169F 0.12 benign(0.197) TCGA-EJ-5495-01 1 55186887 55186893 CCTGCCA - TTC4 Frame_Shift_Del p.C149Sfs*4 0.10 TCGA-EJ-5495-01 1 5964828 5964828 C T NPHP4 Silent p.K664K 0.12 TCGA-EJ-5495-01 20 2083973 2083973 C T STK35 Missense_Mutation p.S285L 0.08 deleterious(0) possibly_damaging(0.874) TCGA-EJ-5495-01 20 32379198 32379198 G T ZNF341 Nonsense_Mutation p.E807* 0.09 TCGA-EJ-5495-01 21 27840880 27840880 G T CYYR1 Silent p.T135T 0.17 TCGA-EJ-5495-01 21 41424003 41424003 A - DSCAM Frame_Shift_Del p.D1690Tfs*11 0.17 TCGA-EJ-5495-01 22 24621251 24621251 C T GGT5 Missense_Mutation p.G490R 0.21 deleterious(0) probably_damaging(1) TCGA-EJ-5495-01 22 36661373 36661373 G T APOL1 Missense_Mutation p.G180V 0.15 deleterious(0.04) benign(0.293) TCGA-EJ-5495-01 22 47432981 47432981 C T TBC1D22A Missense_Mutation p.H406Y 0.13 deleterious(0.03) probably_damaging(1) TCGA-EJ-5495-01 2 105706377 105706377 G C MRPS9 Splice_Site p.X192_splice 0.22 TCGA-EJ-5495-01 2 1168808 1168808 G T SNTG2 Missense_Mutation p.S177I 0.12 deleterious(0) probably_damaging(0.999) TCGA-EJ-5495-01 2 179438165 179438165 T C TTN Missense_Mutation p.T24232A 0.17 TCGA-EJ-5495-01 2 97513860 97513860 C A ANKRD39 3'UTR 0.45 TCGA-EJ-5495-01 3 139075854 139075864 TAAAAATATTT - MRPS22 Missense_Mutation 0.10 TCGA-EJ-5495-01 3 25792603 25792603 C G NGLY1 Missense_Mutation p.R215T 0.15 tolerated(0.44) benign(0.001) TCGA-EJ-5495-01 3 46063159 46063159 C G XCR1 Missense_Mutation p.G94A 0.14 deleterious(0) possibly_damaging(0.811) TCGA-EJ-5495-01 3 50340402 50340402 C G HYAL1 5'UTR 0.20 TCGA-EJ-5495-01 3 52836783 52836783 T A ITIH3 Missense_Mutation p.L557H 0.16 deleterious(0) probably_damaging(0.996) TCGA-EJ-5495-01 4 13601501 13601501 G A BOD1L1 Silent p.S2341S 0.15 TCGA-EJ-5495-01 4 175897499 175897499 G T ADAM29 Nonsense_Mutation p.E275* 0.03 TCGA-EJ-5495-01 4 178897079 178897079 T A LINC01098 Nonsense_Mutation p.Y94* 0.04 TCGA-EJ-5495-01 4 76888458 76888458 C - SDAD1 Frame_Shift_Del p.L339Ffs*12 0.24 TCGA-EJ-5495-01 5 121413182 121413182 C T LOX Missense_Mutation p.V167M 0.16 deleterious(0.04) benign(0.11) TCGA-EJ-5495-01 5 140514934 140514934 A T PCDHB5 5'UTR 0.21 TCGA-EJ-5495-01 5 175110224 175110224 G A HRH2 5'UTR 0.12 TCGA-EJ-5495-01 5 31267702 31267702 C G CDH6 Missense_Mutation p.S41C 0.12 deleterious(0.02) possibly_damaging(0.62) TCGA-EJ-5495-01 5 76259198 76259198 G T CRHBP Missense_Mutation p.D242Y 0.17 deleterious(0) probably_damaging(0.995) TCGA-EJ-5495-01 5 79041206 79041206 G A CMYA5 Missense_Mutation p.M3632I 0.15 benign(0.078) TCGA-EJ-5495-01 6 10430136 10430136 T G LINC00518 RNA 0.14 TCGA-EJ-5495-01 6 155451342 155451342 C T TIAM2 Silent p.L329L 0.14 TCGA-EJ-5495-01 6 160864677 160864677 G A SLC22A3 Silent p.S471S 0.03 TCGA-EJ-5495-01 6 167709633 167709633 A T UNC93A Missense_Mutation p.K128M 0.12 deleterious(0) possibly_damaging(0.903) TCGA-EJ-5495-01 6 32023935 32023935 G T TNXB Silent p.T2720T 0.12 TCGA-EJ-5495-01 6 37622688 37622688 C G MDGA1 Missense_Mutation p.K200N 0.15 deleterious(0) probably_damaging(0.998) TCGA-EJ-5495-01 6 46846062 46846062 A G GPR116 Silent p.L373L 0.20 TCGA-EJ-5495-01 6 54735287 54735287 T C FAM83B Silent p.D81D 0.14 TCGA-EJ-5495-01 6 96651187 96651187 C T FUT9 Silent p.N52N 0.17 TCGA-EJ-5495-01 7 117432054 117432054 G A CTTNBP2 Missense_Mutation p.P399L 0.24 tolerated(0.15) benign(0.04) TCGA-EJ-5495-01 7 117864870 117864870 G A ANKRD7 5'UTR 0.23 TCGA-EJ-5495-01 7 3681627 3681627 A T SDK1 Silent p.T201T 0.03 TCGA-EJ-5495-01 7 55273231 55273231 G T EGFR Missense_Mutation p.G1185V 0.11 deleterious(0.01) probably_damaging(1) TCGA-EJ-5495-01 8 1851472 1851472 G A ARHGEF10 Missense_Mutation p.G559D 0.16 deleterious(0) probably_damaging(0.919) TCGA-EJ-5495-01 9 115200783 115200783 T C HSDL2 Missense_Mutation p.I224T 0.14 deleterious(0.01) benign(0.383) TCGA-EJ-5495-01 9 128113082 128113086 TGCGC - GAPVD1 Frame_Shift_Del p.R1195Cfs*5 0.12 TCGA-EJ-5495-01 9 130473624 130473624 C A C9orf117 Missense_Mutation p.T235N 0.10 tolerated(0.1) possibly_damaging(0.854) TCGA-EJ-5495-01 9 130913928 130913928 G A LCN2 Missense_Mutation p.C96Y 0.15 deleterious(0) probably_damaging(1) TCGA-EJ-5495-01 9 134501446 134501446 G C RAPGEF1 Missense_Mutation p.A523G 0.14 tolerated(0.56) benign(0.106) TCGA-EJ-5495-01 X 148798036 148798036 T A MAGEA11 Missense_Mutation p.L297H 0.38 deleterious(0.02) probably_damaging(1) TCGA-EJ-5495-01 X 73046744 73046744 T C XIST RNA 0.39 TCGA-EJ-5495-01 X 73046745 73046745 C T XIST RNA 0.40 TCGA-EJ-5495-01 X 82763534 82763534 T C POU3F4 Missense_Mutation p.S68P 0.24 tolerated(0.44) benign(0.003) TCGA-EJ-5496-01 10 71007216 71007216 G A HKDC1 Missense_Mutation p.V378I 0.11 tolerated(0.08) possibly_damaging(0.867) TCGA-EJ-5496-01 11 64880871 64880871 C T TM7SF2 Missense_Mutation p.P162S 0.25 tolerated(0.24) probably_damaging(0.972) TCGA-EJ-5496-01 12 14649241 14649241 G C ATF7IP Missense_Mutation p.Q1119H 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-EJ-5496-01 12 99043447 99043447 C T APAF1 Missense_Mutation p.H171Y 0.08 tolerated(0.09) benign(0.008) TCGA-EJ-5496-01 13 107863055 107863055 A G FAM155A Missense_Mutation p.F322L 0.18 tolerated(0.66) benign(0.001) TCGA-EJ-5496-01 13 19748209 19748209 C T TUBA3C Missense_Mutation p.A383T 0.33 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-EJ-5496-01 15 35086889 35086889 G A ACTC1 Missense_Mutation p.R41W 0.15 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-EJ-5496-01 15 78403582 78403582 G A CIB2 Silent p.L41L 0.05 TCGA-EJ-5496-01 15 89811688 89811688 A G FANCI Missense_Mutation p.I272V 0.02 tolerated(0.06) benign(0.169) TCGA-EJ-5496-01 17 42293127 42293127 G A UBTF Silent p.F123F 0.26 TCGA-EJ-5496-01 19 42312921 42312921 G A CEACAM3 Silent p.A165A 0.20 TCGA-EJ-5496-01 19 51022077 51022077 G A LRRC4B Missense_Mutation p.T298M 0.21 deleterious(0.01) possibly_damaging(0.601) TCGA-EJ-5496-01 19 9047100 9047100 G A MUC16 Missense_Mutation p.H11511Y 0.27 benign(0.003) TCGA-EJ-5496-01 1 119576827 119576827 G A WARS2 Silent p.H175H 0.05 TCGA-EJ-5496-01 1 196459055 196459055 C T KCNT2 Missense_Mutation p.R63H 0.23 deleterious(0) benign(0.34) TCGA-EJ-5496-01 1 27106761 27106761 A G ARID1A Silent p.K2124K 0.22 TCGA-EJ-5496-01 1 29314300 29314300 A G EPB41 Silent p.E117E 0.03 TCGA-EJ-5496-01 1 46977762 46977762 C T DMBX1 Missense_Mutation p.L244F 0.16 tolerated_low_confidence(0.71) possibly_damaging(0.521) TCGA-EJ-5496-01 20 31023728 31023728 G A ASXL1 Silent p.A1071A 0.27 TCGA-EJ-5496-01 20 50401031 50401031 C T SALL4 Missense_Mutation p.G979S 0.12 deleterious(0) possibly_damaging(0.902) TCGA-EJ-5496-01 2 15608534 15608534 C T NBAS Missense_Mutation p.A617T 0.17 deleterious(0.03) possibly_damaging(0.827) TCGA-EJ-5496-01 2 197583282 197583282 G A CCDC150 Missense_Mutation p.R641H 0.24 tolerated(0.1) benign(0.055) TCGA-EJ-5496-01 3 160803633 160803633 G A B3GALNT1 Missense_Mutation p.R304C 0.22 tolerated(0.15) benign(0.003) TCGA-EJ-5496-01 3 31710253 31710253 C T OSBPL10 Nonsense_Mutation p.W659* 0.22 TCGA-EJ-5496-01 4 123192755 123192755 G A KIAA1109 Silent p.V2692V 0.05 TCGA-EJ-5496-01 4 177190130 177190130 C G ASB5 Missense_Mutation p.V44L 0.05 deleterious(0.03) possibly_damaging(0.822) TCGA-EJ-5496-01 4 62813888 62813888 G T LPHN3 Missense_Mutation p.W832L 0.17 deleterious(0.01) probably_damaging(1) TCGA-EJ-5496-01 4 70721017 70721017 A T SULT1E1 Splice_Site p.X91_splice 0.12 TCGA-EJ-5496-01 5 114466559 114466559 C T TRIM36 Missense_Mutation p.C521Y 0.17 tolerated(0.19) probably_damaging(0.999) TCGA-EJ-5496-01 5 130766663 130766663 G A RAPGEF6 Nonsense_Mutation p.Q1460* 0.21 TCGA-EJ-5496-01 5 176636871 176636871 G A NSD1 Missense_Mutation p.E491K 0.20 tolerated_low_confidence(0.32) possibly_damaging(0.526) TCGA-EJ-5496-01 5 3599606 3599606 C T IRX1 Missense_Mutation p.R182C 0.15 deleterious(0) probably_damaging(0.993) TCGA-EJ-5496-01 6 119510998 119510998 G A MAN1A1 Silent p.I459I 0.26 TCGA-EJ-5496-01 6 153043291 153043291 G A MYCT1 Missense_Mutation p.R204H 0.15 deleterious(0.02) probably_damaging(0.949) TCGA-EJ-5496-01 6 26017716 26017716 C T HIST1H1A Missense_Mutation p.R82H 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-EJ-5496-01 7 124537227 124537227 T C POT1 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0.01) benign(0.002) TCGA-EJ-5496-01 7 30402036 30402036 C A ZNRF2 Missense_Mutation p.H239N 0.15 deleterious(0) probably_damaging(0.999) TCGA-EJ-5496-01 8 2830734 2830734 C T CSMD1 Missense_Mutation p.R2943H 0.22 possibly_damaging(0.787) TCGA-EJ-5496-01 8 55538481 55538481 C T RP1 Missense_Mutation p.A680V 0.06 tolerated(0.68) benign(0) TCGA-EJ-5496-01 9 36923352 36923352 C A PAX5 Missense_Mutation p.G304C 0.23 deleterious(0) benign(0.429) TCGA-EJ-5496-01 9 74970894 74970894 A C ZFAND5 Missense_Mutation p.V206G 0.14 deleterious(0) probably_damaging(0.982) TCGA-EJ-5497-01 11 134054637 134054637 C T NCAPD3 Silent p.K782K 0.17 TCGA-EJ-5497-01 11 93529637 93529637 T - MED17 Frame_Shift_Del p.T359Lfs*13 0.16 TCGA-EJ-5497-01 13 100204418 100204418 C G TM9SF2 Intron 0.09 TCGA-EJ-5497-01 13 76374992 76374992 A G LMO7 5'UTR 0.04 TCGA-EJ-5497-01 14 24543288 24543288 C T CPNE6 Missense_Mutation p.P126L 0.16 deleterious(0) benign(0.321) TCGA-EJ-5497-01 14 72054698 72054698 C T SIPA1L1 Missense_Mutation p.R37W 0.03 deleterious(0) probably_damaging(0.993) TCGA-EJ-5497-01 15 101013167 101013167 C A CERS3 Missense_Mutation p.V234L 0.10 deleterious(0) probably_damaging(0.922) TCGA-EJ-5497-01 17 26901519 26901519 G T ALDOC Missense_Mutation p.T206K 0.03 deleterious(0) probably_damaging(0.997) TCGA-EJ-5497-01 17 79409621 79409621 G A RP11-1055B8.7 Missense_Mutation p.V416M 0.36 benign(0.032) TCGA-EJ-5497-01 18 55027527 55027527 G A ST8SIA3 3'UTR 0.13 TCGA-EJ-5497-01 19 36297714 36297714 C T PRODH2 Missense_Mutation p.V309M 0.18 deleterious(0) probably_damaging(0.998) TCGA-EJ-5497-01 1 152748962 152748962 C G LCE1F Missense_Mutation p.P39A 0.14 deleterious_low_confidence(0) unknown(0) TCGA-EJ-5497-01 1 152748963 152748963 C T LCE1F Missense_Mutation p.P39L 0.13 deleterious_low_confidence(0) unknown(0) TCGA-EJ-5497-01 1 90058622 90058622 T A LRRC8B 3'UTR 0.04 TCGA-EJ-5497-01 20 34458923 34458923 A G PHF20 Silent p.L323L 0.04 TCGA-EJ-5497-01 20 45797830 45797830 A C EYA2 Missense_Mutation p.N341T 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-EJ-5497-01 2 100199303 100199303 G C AFF3 Missense_Mutation p.P942R 0.05 tolerated(0.91) benign(0.002) TCGA-EJ-5497-01 2 207636634 207636634 A - FASTKD2 Frame_Shift_Del p.E336Dfs*2 0.17 TCGA-EJ-5497-01 2 211454904 211454904 G A CPS1 Silent p.A268A 0.04 TCGA-EJ-5497-01 2 74708964 74708964 A T CCDC142 Missense_Mutation p.L334Q 0.06 deleterious(0) possibly_damaging(0.839) TCGA-EJ-5497-01 5 139201586 139201586 G A PSD2 Silent p.S402S 0.09 TCGA-EJ-5497-01 5 140176553 140176553 G A PCDHA2 Silent p.S668S 0.07 TCGA-EJ-5497-01 6 152639275 152639275 T C SYNE1 Missense_Mutation p.T5505A 0.04 benign(0.002) TCGA-EJ-5497-01 7 149431015 149431015 C G KRBA1 Missense_Mutation p.A990G 0.15 deleterious(0) probably_damaging(0.971) TCGA-EJ-5497-01 8 113275870 113275870 A - CSMD3 Frame_Shift_Del p.L3287Yfs*37 0.22 TCGA-EJ-5497-01 9 113703743 113703743 C T LPAR1 Missense_Mutation p.D251N 0.20 deleterious(0.01) possibly_damaging(0.652) TCGA-EJ-5497-01 9 40702847 40702847 C A SPATA31A3 Silent p.T168T 0.04 TCGA-EJ-5498-01 10 17632152 17632152 C T PTPLA 3'UTR 0.36 TCGA-EJ-5498-01 11 87847074 87847074 C T RAB38 3'UTR 0.16 TCGA-EJ-5498-01 12 55820712 55820712 C T OR6C76 Silent p.I225I 0.14 TCGA-EJ-5498-01 12 88928477 88928477 C G KITLG Intron 0.15 TCGA-EJ-5498-01 13 113729393 113729393 C T MCF2L Missense_Mutation p.R400C 0.13 tolerated(0.2) benign(0.005) TCGA-EJ-5498-01 14 64557603 64557603 G A SYNE2 Missense_Mutation p.R3938H 0.15 benign(0.009) TCGA-EJ-5498-01 15 33954939 33954939 C T RYR3 Silent p.G1736G 0.14 TCGA-EJ-5498-01 17 62968909 62968909 T - AMZ2P1 RNA 0.14 TCGA-EJ-5498-01 18 43505804 43505804 G A EPG5 Missense_Mutation p.A873V 0.09 tolerated(0.1) probably_damaging(0.972) TCGA-EJ-5498-01 18 61170910 61170910 C A SERPINB5 Missense_Mutation p.N361K 0.03 deleterious(0) probably_damaging(1) TCGA-EJ-5498-01 19 11417404 11417404 A G TSPAN16 Missense_Mutation p.D192G 0.06 tolerated(0.07) benign(0.015) TCGA-EJ-5498-01 19 41596036 41596036 G A CYP2A13 Missense_Mutation p.R143H 0.17 deleterious(0.01) benign(0.083) TCGA-EJ-5498-01 19 44352238 44352238 C G ZNF283 Silent p.T495T 0.06 TCGA-EJ-5498-01 19 50939044 50939044 G A MYBPC2 Missense_Mutation p.E41K 0.33 tolerated(0.17) unknown(0) TCGA-EJ-5498-01 19 56090151 56090151 C T ZNF579 Silent p.L285L 0.08 TCGA-EJ-5498-01 19 57329201 57329201 G T PEG3 Missense_Mutation p.Q259K 0.10 deleterious(0.03) probably_damaging(0.958) TCGA-EJ-5498-01 1 114319949 114319949 G C RSBN1 Missense_Mutation p.S514C 0.17 deleterious(0) probably_damaging(0.997) TCGA-EJ-5498-01 1 196695918 196695918 C A CFH Missense_Mutation p.P695H 0.14 deleterious(0) probably_damaging(0.991) TCGA-EJ-5498-01 1 197104365 197104365 G C ASPM Silent p.P678P 0.10 TCGA-EJ-5498-01 1 228462137 228462137 C T OBSCN Missense_Mutation p.T2267I 0.15 possibly_damaging(0.571) TCGA-EJ-5498-01 1 231377146 231377146 A G GNPAT Missense_Mutation p.N8D 0.14 tolerated_low_confidence(0.5) unknown(0) TCGA-EJ-5498-01 1 40027846 40027846 T C PABPC4 Missense_Mutation p.M598V 0.03 tolerated(0.21) benign(0.057) TCGA-EJ-5498-01 20 35668590 35668590 C T RBL1 Silent p.K623K 0.09 TCGA-EJ-5498-01 20 4705797 4705797 C T PRND 3'UTR 0.27 TCGA-EJ-5498-01 21 27078323 27078323 G A JAM2 Missense_Mutation p.V244I 0.11 tolerated(0.07) benign(0.171) TCGA-EJ-5498-01 21 41684282 41684282 C T DSCAM Silent p.P596P 0.12 TCGA-EJ-5498-01 21 46645452 46645452 T C ADARB1 3'UTR 0.18 TCGA-EJ-5498-01 2 143790837 143790837 C T KYNU Nonsense_Mutation p.R330* 0.11 TCGA-EJ-5498-01 2 231222557 231222557 G T SP140L Missense_Mutation p.V49F 0.03 tolerated(1) benign(0.003) TCGA-EJ-5498-01 2 48059590 48059590 C T FBXO11 Silent p.A432A 0.12 TCGA-EJ-5498-01 3 108112995 108112995 G A MYH15 Silent p.S1734S 0.16 TCGA-EJ-5498-01 3 47163433 47163433 A C SETD2 Missense_Mutation p.L898W 0.03 deleterious_low_confidence(0) possibly_damaging(0.784) TCGA-EJ-5498-01 3 88199141 88199141 G T C3orf38 5'UTR 0.24 TCGA-EJ-5498-01 4 126242091 126242091 C T FAT4 Missense_Mutation p.R1509W 0.15 probably_damaging(0.985) TCGA-EJ-5498-01 4 71472377 71472377 C T AMBN Missense_Mutation p.T425I 0.18 tolerated(0.14) possibly_damaging(0.447) TCGA-EJ-5498-01 5 16475005 16475005 T C FAM134B Missense_Mutation p.T447A 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-EJ-5498-01 6 132859537 132859537 G A TAAR9 Missense_Mutation p.A37T 0.16 tolerated(0.45) benign(0.002) TCGA-EJ-5498-01 6 31850727 31850727 G T EHMT2 Missense_Mutation p.N1018K 0.06 deleterious(0) probably_damaging(0.999) TCGA-EJ-5498-01 6 42824964 42824964 C A GLTSCR1L Missense_Mutation p.D748E 0.12 tolerated(0.18) benign(0.116) TCGA-EJ-5498-01 7 106524649 106524649 T C PIK3CG Missense_Mutation p.V937A 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-EJ-5498-01 7 121943288 121943288 G A FEZF1 Silent p.C293C 0.15 TCGA-EJ-5498-01 7 48327660 48327660 G A ABCA13 Silent p.A2980A 0.20 TCGA-EJ-5498-01 7 94940824 94940824 A C PON1 Missense_Mutation p.F146V 0.16 deleterious(0) possibly_damaging(0.899) TCGA-EJ-5498-01 8 116426187 116426187 T A TRPS1 3'UTR 0.12 TCGA-EJ-5498-01 8 55537506 55537506 A T RP1 Missense_Mutation p.K355I 0.14 deleterious(0) benign(0.137) TCGA-EJ-5498-01 9 139847394 139847394 G A LCN12 Silent p.P55P 0.14 TCGA-EJ-5498-01 X 101826202 101826202 G T NXF4 Intron 0.43 TCGA-EJ-5498-01 X 11204545 11204545 T C ARHGAP6 Missense_Mutation p.M362V 0.32 tolerated(0.39) benign(0.074) TCGA-EJ-5499-01 10 49457141 49457141 G T FRMPD2 Missense_Mutation p.H78N 0.29 tolerated(0.15) possibly_damaging(0.649) TCGA-EJ-5499-01 11 102562466 102562466 A G MMP27 3'UTR 0.23 TCGA-EJ-5499-01 12 10234003 10234003 T A CLEC1A Missense_Mutation p.Y75F 0.21 tolerated(1) benign(0.001) TCGA-EJ-5499-01 12 112717041 112717041 A G HECTD4 Missense_Mutation p.S416P 0.21 probably_damaging(0.916) TCGA-EJ-5499-01 12 113321125 113321125 C T RPH3A Missense_Mutation p.R452W 0.17 deleterious(0) probably_damaging(0.999) TCGA-EJ-5499-01 12 15102816 15102816 G A ARHGDIB Missense_Mutation p.P62L 0.21 deleterious(0.03) benign(0.034) TCGA-EJ-5499-01 12 52863634 52863634 C T KRT6C Missense_Mutation p.R415H 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-EJ-5499-01 12 6495568 6495568 A G LTBR Missense_Mutation p.T209A 0.29 tolerated(0.72) benign(0.011) TCGA-EJ-5499-01 12 97093817 97093817 A - C12orf55 Frame_Shift_Del p.N2142Tfs*16 0.19 TCGA-EJ-5499-01 14 65239589 65239589 G T SPTB Silent p.I1754I 0.26 TCGA-EJ-5499-01 14 73719443 73719443 C T PAPLN Missense_Mutation p.R325W 0.24 deleterious(0.01) probably_damaging(0.924) TCGA-EJ-5499-01 15 65917480 65917480 A G SLC24A1 Silent p.V354V 0.27 TCGA-EJ-5499-01 15 67547205 67547205 C G IQCH 5'UTR 0.09 TCGA-EJ-5499-01 15 85345691 85345691 G T ZNF592 3'UTR 0.25 TCGA-EJ-5499-01 16 30495266 30495266 C T ITGAL Missense_Mutation p.R281C 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-5499-01 17 41020769 41020769 G A AOC4P RNA 0.36 TCGA-EJ-5499-01 17 57128666 57128666 A - TRIM37 Frame_Shift_Del p.F408Sfs*26 0.23 TCGA-EJ-5499-01 17 73919295 73919295 C A FBF1 Missense_Mutation p.G451W 0.19 deleterious(0) possibly_damaging(0.853) TCGA-EJ-5499-01 18 55024179 55024179 A T ST8SIA3 Missense_Mutation p.N113I 0.18 possibly_damaging(0.716) TCGA-EJ-5499-01 19 19375452 19375452 G A TM6SF2 3'UTR 0.16 TCGA-EJ-5499-01 19 22001955 22001955 T G ZNF43 Silent p.A24A 0.24 TCGA-EJ-5499-01 19 42301582 42301582 G A CEACAM3 Silent p.P42P 0.24 TCGA-EJ-5499-01 19 55106788 55106788 G A LILRA1 Silent p.S194S 0.22 TCGA-EJ-5499-01 19 56160335 56160335 G A CCDC106 5'UTR 0.05 TCGA-EJ-5499-01 19 58862934 58862934 G A A1BG Missense_Mutation p.R245C 0.16 deleterious(0) probably_damaging(0.977) TCGA-EJ-5499-01 1 152732100 152732100 G A KPRP Silent p.P12P 0.24 TCGA-EJ-5499-01 1 34015923 34015923 G A CSMD2 Missense_Mutation p.P2780L 0.20 deleterious(0.01) probably_damaging(0.951) TCGA-EJ-5499-01 1 43675874 43675874 C A WDR65 3'UTR 0.20 TCGA-EJ-5499-01 20 32441420 32441420 C A CHMP4B 3'UTR 0.08 TCGA-EJ-5499-01 22 19121828 19121828 G A DGCR14 Missense_Mutation p.P438S 0.31 deleterious(0.01) probably_damaging(0.928) TCGA-EJ-5499-01 2 1133461 1133461 G A SNTG2 Missense_Mutation p.G126D 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-5499-01 2 166165901 166165901 G A SCN2A Intron 0.06 TCGA-EJ-5499-01 2 218679689 218679689 A C TNS1 Missense_Mutation p.F1455V 0.31 deleterious(0) probably_damaging(0.997) TCGA-EJ-5499-01 3 9771302 9771302 C T CPNE9 Missense_Mutation p.R530C 0.15 deleterious(0) possibly_damaging(0.551) TCGA-EJ-5499-01 4 155254246 155254246 G A DCHS2 Silent p.N539N 0.07 TCGA-EJ-5499-01 4 175898106 175898106 A G ADAM29 Missense_Mutation p.D477G 0.20 tolerated(0.05) benign(0.062) TCGA-EJ-5499-01 5 140870417 140870417 G A PCDHGC5 Missense_Mutation p.R537Q 0.24 tolerated(0.33) benign(0.038) TCGA-EJ-5499-01 5 149460527 149460527 G A CSF1R Missense_Mutation p.T37M 0.22 tolerated(0.1) benign(0.08) TCGA-EJ-5499-01 5 153835716 153835716 A G SAP30L 3'UTR 0.29 TCGA-EJ-5499-01 6 131490307 131490307 A G AKAP7 Silent p.G161G 0.22 TCGA-EJ-5499-01 6 153292428 153292428 T C FBXO5 Missense_Mutation p.Y405C 0.11 deleterious(0) probably_damaging(0.962) TCGA-EJ-5499-01 6 35588018 35588018 G A FKBP5 Missense_Mutation p.A95V 0.24 deleterious(0.01) benign(0.246) TCGA-EJ-5499-01 6 38816530 38816530 C T DNAH8 Missense_Mutation p.L1501F 0.09 probably_damaging(0.994) TCGA-EJ-5499-01 8 106811063 106811063 C T ZFPM2 Missense_Mutation p.S284L 0.26 tolerated(0.11) benign(0.031) TCGA-EJ-5499-01 9 8485768 8485768 C G PTPRD Missense_Mutation p.D1017H 0.25 deleterious(0.04) possibly_damaging(0.523) TCGA-EJ-5499-01 X 106064139 106064139 G T TBC1D8B Missense_Mutation p.D92Y 0.46 deleterious(0) possibly_damaging(0.713) TCGA-EJ-5499-01 X 1407464 1407464 G T CSF2RA Missense_Mutation p.G91V 0.22 deleterious(0) probably_damaging(0.998) TCGA-EJ-5499-01 X 50378349 50378349 G A SHROOM4 Missense_Mutation p.R242C 0.25 tolerated(0.19) benign(0.394) TCGA-EJ-5501-01 10 72500856 72500856 G A ADAMTS14 Missense_Mutation p.R624H 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-EJ-5501-01 12 115114119 115114120 TT - TBX3 Frame_Shift_Del p.K366Rfs*8 0.14 TCGA-EJ-5501-01 12 4736294 4736294 T C AKAP3 Missense_Mutation p.S592G 0.18 deleterious(0.02) possibly_damaging(0.771) TCGA-EJ-5501-01 12 56552380 56552380 G A MYL6 Intron 0.17 TCGA-EJ-5501-01 14 61113006 61113007 - C SIX1 Frame_Shift_Ins p.S284Vfs*22 0.27 TCGA-EJ-5501-01 15 62214732 62214734 ACA - VPS13C In_Frame_Del p.V2280del 0.17 TCGA-EJ-5501-01 15 81636301 81636301 C T TMC3 Missense_Mutation p.R535Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-EJ-5501-01 16 74455141 74455141 G A CLEC18B Missense_Mutation p.R10W 0.07 tolerated_low_confidence(0.17) benign(0.001) TCGA-EJ-5501-01 17 79207799 79207799 C T ENTHD2 Silent p.K119K 0.09 TCGA-EJ-5501-01 1 21808232 21808232 G A NBPF3 Missense_Mutation p.E526K 0.26 tolerated(0.38) benign(0.067) TCGA-EJ-5501-01 20 47692015 47692015 C T CSE1L Silent p.I431I 0.04 TCGA-EJ-5501-01 22 38467745 38467745 C T PICK1 Missense_Mutation p.H184Y 0.13 tolerated(0.79) benign(0.004) TCGA-EJ-5501-01 2 121107482 121107482 C T INHBB 3'UTR 0.11 TCGA-EJ-5501-01 2 121746685 121746685 C T GLI2 Silent p.D1065D 0.07 TCGA-EJ-5501-01 2 132237011 132237011 G C TUBA3D Silent p.L119L 0.12 TCGA-EJ-5501-01 2 25467186 25467186 C T DNMT3A Silent p.V563V 0.19 TCGA-EJ-5501-01 2 87015654 87015654 G A CD8A Missense_Mutation p.R219W 0.18 deleterious(0) probably_damaging(1) TCGA-EJ-5501-01 4 8584289 8584289 C T GPR78 Missense_Mutation p.R234W 0.17 deleterious(0) probably_damaging(0.932) TCGA-EJ-5501-01 5 112478967 112478967 C T MCC Missense_Mutation p.V278I 0.23 tolerated(0.63) benign(0.001) TCGA-EJ-5501-01 5 14711313 14711313 T C ANKH Missense_Mutation p.N491S 0.22 tolerated_low_confidence(1) benign(0) TCGA-EJ-5501-01 5 177163583 177163583 C T FAM153A Missense_Mutation p.E144K 0.20 tolerated_low_confidence(0.72) benign(0.147) TCGA-EJ-5501-01 5 205601 205601 G A CCDC127 Silent p.P198P 0.15 TCGA-EJ-5501-01 5 2749500 2749500 G A IRX2 Silent p.D217D 0.07 TCGA-EJ-5501-01 5 44809374 44809374 C G MRPS30 Missense_Mutation p.R104G 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-EJ-5501-01 9 111735029 111735029 C T CTNNAL1 Missense_Mutation p.G425R 0.20 deleterious(0) probably_damaging(1) TCGA-EJ-5501-01 9 131553912 131553912 G - TBC1D13 Frame_Shift_Del p.Q80Hfs*16 0.19 TCGA-EJ-5502-01 10 15120540 15120540 A C ACBD7 Missense_Mutation p.Y86D 0.08 deleterious(0.01) benign(0.114) TCGA-EJ-5502-01 11 36597450 36597450 G A RAG1 Missense_Mutation p.V866M 0.06 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-EJ-5502-01 19 14991753 14991753 G A OR7A17 Missense_Mutation p.R139W 0.09 tolerated_low_confidence(0.43) benign(0.004) TCGA-EJ-5502-01 19 19681601 19681601 C T PBX4 Missense_Mutation p.A79T 0.06 deleterious(0.03) benign(0.177) TCGA-EJ-5502-01 2 26699845 26699845 G A OTOF Missense_Mutation p.R864C 0.09 deleterious(0) probably_damaging(0.937) TCGA-EJ-5502-01 2 74040747 74040747 C A C2orf78 Missense_Mutation p.Q81K 0.06 deleterious(0) benign(0.166) TCGA-EJ-5502-01 5 140605445 140605445 C T PCDHB14 Nonsense_Mutation p.R790* 0.09 TCGA-EJ-5502-01 8 106814115 106814115 C T ZFPM2 Missense_Mutation p.T602I 0.08 tolerated(0.1) benign(0.1) TCGA-EJ-5502-01 8 24775449 24775449 C A NEFM Missense_Mutation p.A694E 0.05 tolerated(0.48) possibly_damaging(0.787) TCGA-EJ-5502-01 8 28385111 28385111 A T FZD3 Silent p.T278T 0.04 TCGA-EJ-5502-01 8 62212651 62212651 G T CLVS1 Missense_Mutation p.D89Y 0.05 deleterious(0) possibly_damaging(0.853) TCGA-EJ-5502-01 9 99015189 99015189 C T HSD17B3 Missense_Mutation p.R94Q 0.05 tolerated(0.94) benign(0.003) TCGA-EJ-5502-01 X 70357096 70357096 C A MED12 Silent p.R1871R 0.05 TCGA-EJ-5503-01 14 89083083 89083083 C T EML5 Missense_Mutation p.C1928Y 0.08 deleterious(0) possibly_damaging(0.894) TCGA-EJ-5503-01 15 23812105 23812105 G T MKRN3 Missense_Mutation p.K392N 0.04 deleterious(0) possibly_damaging(0.905) TCGA-EJ-5503-01 19 42879947 42879947 G T MEGF8 Missense_Mutation p.G2453C 0.12 deleterious(0) probably_damaging(0.978) TCGA-EJ-5503-01 1 16274882 16274882 C A ZBTB17 Missense_Mutation p.A37S 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EJ-5503-01 22 38202050 38202050 C T H1F0 Missense_Mutation p.P167S 0.06 tolerated(1) unknown(0) TCGA-EJ-5503-01 6 31127393 31127393 G T TCF19 Missense_Mutation p.E49D 0.06 tolerated(0.48) possibly_damaging(0.874) TCGA-EJ-5503-01 7 148947631 148947631 G A ZNF212 Missense_Mutation p.A136T 0.06 tolerated(0.11) benign(0.006) TCGA-EJ-5503-01 9 130495419 130495419 C A TOR2A Intron 0.06 TCGA-EJ-5504-01 10 127525312 127525312 C A DHX32 Nonsense_Mutation p.E726* 0.11 TCGA-EJ-5504-01 11 102742648 102742648 C A MMP12 RNA 0.17 TCGA-EJ-5504-01 11 103907489 103907489 G A DDI1 5'UTR 0.15 TCGA-EJ-5504-01 11 119002676 119002676 C G HINFP Silent p.R220R 0.15 TCGA-EJ-5504-01 11 63235886 63235886 A T HRASLS5 Missense_Mutation p.Y143N 0.04 deleterious(0) probably_damaging(1) TCGA-EJ-5504-01 12 131498747 131498747 C T GPR133 Silent p.I445I 0.16 TCGA-EJ-5504-01 12 27845851 27845852 - T PPFIBP1 3'UTR 0.20 TCGA-EJ-5504-01 12 56030939 56030939 G A OR10P1 Silent p.P88P 0.17 TCGA-EJ-5504-01 13 52661539 52661539 T G NEK5 Silent p.R443R 0.24 TCGA-EJ-5504-01 13 78493499 78493499 G C EDNRB Intron 0.08 TCGA-EJ-5504-01 14 103986922 103986922 C A CKB Missense_Mutation p.D221Y 0.08 tolerated(0.1) probably_damaging(0.993) TCGA-EJ-5504-01 14 105622204 105622204 C T JAG2 Missense_Mutation p.E200K 0.19 deleterious(0) possibly_damaging(0.759) TCGA-EJ-5504-01 14 23862693 23862693 T C MYH6 Missense_Mutation p.D988G 0.19 deleterious(0.02) possibly_damaging(0.806) TCGA-EJ-5504-01 14 78227450 78227450 A G C14orf178 Missense_Mutation p.Q22R 0.16 tolerated_low_confidence(0.14) benign(0.145) TCGA-EJ-5504-01 15 40698128 40698128 C T IVD Missense_Mutation p.P37S 0.06 tolerated(0.09) benign(0.016) TCGA-EJ-5504-01 15 52058730 52058730 A G TMOD2 Missense_Mutation p.Q31R 0.18 tolerated(0.09) probably_damaging(1) TCGA-EJ-5504-01 15 53081026 53081026 C A ONECUT1 Missense_Mutation p.K352N 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-EJ-5504-01 16 27373986 27373986 G T IL4R Missense_Mutation p.S438I 0.20 deleterious(0) possibly_damaging(0.595) TCGA-EJ-5504-01 16 3063524 3063524 G C CLDN9 Missense_Mutation p.C54S 0.15 deleterious(0) probably_damaging(0.999) TCGA-EJ-5504-01 17 3195519 3195519 C T OR3A1 Missense_Mutation p.A120T 0.07 deleterious(0.03) benign(0.133) TCGA-EJ-5504-01 18 76753607 76753607 G C SALL3 Missense_Mutation p.G539A 0.37 tolerated(0.09) benign(0.265) TCGA-EJ-5504-01 19 58352939 58352939 G A ZNF587B Silent p.G299G 0.38 TCGA-EJ-5504-01 1 107867346 107867346 C T NTNG1 Missense_Mutation p.A230V 0.12 deleterious(0.02) probably_damaging(1) TCGA-EJ-5504-01 1 120928466 120928466 G A FCGR1B Intron 0.12 TCGA-EJ-5504-01 1 163122355 163122355 C T RGS5 Silent p.T123T 0.18 TCGA-EJ-5504-01 1 17295800 17295800 C G CROCC Missense_Mutation p.L1756V 0.27 possibly_damaging(0.567) TCGA-EJ-5504-01 1 248367247 248367247 G A OR2M3 Missense_Mutation p.R293H 0.12 deleterious(0.04) benign(0.013) TCGA-EJ-5504-01 1 55521763 55521763 C T PCSK9 Silent p.A299A 0.18 TCGA-EJ-5504-01 20 18474599 18474599 C T RBBP9 Intron 0.14 TCGA-EJ-5504-01 20 33575015 33575015 G A MYH7B Missense_Mutation p.A400T 0.08 possibly_damaging(0.676) TCGA-EJ-5504-01 20 47989612 47989612 C T KCNB1 Missense_Mutation p.E829K 0.04 deleterious_low_confidence(0.05) benign(0.033) TCGA-EJ-5504-01 20 9364889 9364889 G A PLCB4 Missense_Mutation p.D299N 0.05 deleterious(0) probably_damaging(0.999) TCGA-EJ-5504-01 21 45523339 45523339 A G TRAPPC10 Missense_Mutation p.N1236S 0.15 tolerated(0.12) possibly_damaging(0.629) TCGA-EJ-5504-01 2 219353102 219353102 G T USP37 Silent p.L505L 0.14 TCGA-EJ-5504-01 3 108347996 108347996 A G DZIP3 Silent p.E223E 0.08 TCGA-EJ-5504-01 3 194081448 194081448 C T LRRC15 Missense_Mutation p.A115T 0.21 tolerated(0.35) benign(0.338) TCGA-EJ-5504-01 3 45988802 45988802 G A CXCR6 Missense_Mutation p.A277T 0.10 deleterious(0) probably_damaging(0.949) TCGA-EJ-5504-01 4 151738393 151738393 C T LRBA Missense_Mutation p.A1730T 0.13 tolerated(1) benign(0) TCGA-EJ-5504-01 4 1980396 1980396 C T WHSC1 Silent p.D1286D 0.21 TCGA-EJ-5504-01 4 20714532 20714532 T A PACRGL Missense_Mutation p.L163Q 0.13 deleterious(0) probably_damaging(0.988) TCGA-EJ-5504-01 4 41621474 41621474 G A LIMCH1 Intron 0.15 TCGA-EJ-5504-01 5 112418689 112418689 G C MCC Missense_Mutation p.A551G 0.20 deleterious(0.01) probably_damaging(0.987) TCGA-EJ-5504-01 5 140262046 140262046 C T PCDHA13 Missense_Mutation p.R65W 0.03 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-EJ-5504-01 6 132203595 132203595 C T ENPP1 Silent p.Y737Y 0.15 TCGA-EJ-5504-01 6 28294582 28294582 G T ZSCAN31 Silent p.I194I 0.08 TCGA-EJ-5504-01 6 28294583 28294583 A T ZSCAN31 Missense_Mutation p.I194N 0.08 deleterious(0.01) benign(0.047) TCGA-EJ-5504-01 6 42689807 42689807 G T PRPH2 Missense_Mutation p.A89D 0.13 tolerated(0.42) benign(0.012) TCGA-EJ-5504-01 6 52897365 52897365 T G ICK Missense_Mutation p.M82L 0.20 deleterious(0.03) benign(0.195) TCGA-EJ-5504-01 7 121652283 121652283 G A PTPRZ1 Silent p.E1061E 0.14 TCGA-EJ-5504-01 7 89906575 89906575 A G C7orf63 Missense_Mutation p.Y361C 0.05 tolerated(0.06) benign(0.022) TCGA-EJ-5504-01 8 41800403 41800403 A C KAT6A Missense_Mutation p.S782A 0.06 benign(0.205) TCGA-EJ-5504-01 8 61144866 61144866 C T CA8 Missense_Mutation p.A164T 0.04 tolerated(0.07) benign(0.266) TCGA-EJ-5504-01 9 129642273 129642273 C T ZBTB34 Nonsense_Mutation p.Q195* 0.16 TCGA-EJ-5504-01 9 35674081 35674081 G A CA9 Missense_Mutation p.R42Q 0.15 tolerated_low_confidence(0.44) unknown(0) TCGA-EJ-5504-01 9 71841089 71841089 A G TJP2 Missense_Mutation p.E434G 0.18 deleterious(0) benign(0.381) TCGA-EJ-5504-01 X 107225170 107225170 A G TEX13B Missense_Mutation p.V63A 0.09 tolerated(1) benign(0.021) TCGA-EJ-5504-01 X 14748515 14748515 C T GLRA2 Nonsense_Mutation p.R423* 0.42 TCGA-EJ-5504-01 X 150348254 150348254 G A GPR50 Missense_Mutation p.V67M 0.04 deleterious(0.01) probably_damaging(0.994) TCGA-EJ-5505-01 10 16562941 16562941 T A C1QL3 Missense_Mutation p.S42C 0.43 deleterious(0.02) benign(0.192) TCGA-EJ-5505-01 10 95429434 95429434 C A FRA10AC1 3'UTR 0.20 TCGA-EJ-5505-01 11 122848489 122848489 G A BSX Silent p.R190R 0.14 TCGA-EJ-5505-01 11 123810477 123810477 G A OR4D5 Missense_Mutation p.D52N 0.25 tolerated(0.07) benign(0.009) TCGA-EJ-5505-01 11 62566115 62566115 C A NXF1 Intron 0.22 TCGA-EJ-5505-01 11 74618288 74618288 C G XRRA1 Missense_Mutation p.K221N 0.16 deleterious(0.02) possibly_damaging(0.791) TCGA-EJ-5505-01 11 93803647 93803647 T C HEPHL1 Missense_Mutation p.W391R 0.30 deleterious(0) probably_damaging(0.999) TCGA-EJ-5505-01 12 131487352 131487352 C T GPR133 Intron 0.17 TCGA-EJ-5505-01 12 54756338 54756338 A T GPR84 3'UTR 0.24 TCGA-EJ-5505-01 12 56817470 56817470 C T TIMELESS Missense_Mutation p.R663H 0.24 tolerated(0.09) benign(0.001) TCGA-EJ-5505-01 16 29755663 29755663 G A C16orf54 Missense_Mutation p.R204W 0.15 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-EJ-5505-01 16 31427932 31427932 G A ITGAD Missense_Mutation p.A822T 0.23 tolerated(0.08) benign(0.397) TCGA-EJ-5505-01 16 58621140 58621140 A C CNOT1 Missense_Mutation p.L133R 0.17 deleterious(0) possibly_damaging(0.669) TCGA-EJ-5505-01 17 47696688 47696688 T G SPOP Missense_Mutation p.Y87S 0.18 tolerated(0.06) probably_damaging(1) TCGA-EJ-5505-01 19 10265299 10265299 C T DNMT1 Missense_Mutation p.D599N 0.20 deleterious(0.04) possibly_damaging(0.462) TCGA-EJ-5505-01 19 48654539 48654539 C T LIG1 Missense_Mutation p.G175E 0.21 tolerated(0.85) benign(0) TCGA-EJ-5505-01 1 109177915 109177915 C A FAM102B 3'UTR 0.31 TCGA-EJ-5505-01 1 155451980 155451980 A T ASH1L Nonsense_Mutation p.C227* 0.27 TCGA-EJ-5505-01 1 229635527 229635527 G C NUP133 Missense_Mutation p.I184M 0.14 deleterious(0.01) benign(0.406) TCGA-EJ-5505-01 20 4202306 4202306 C T ADRA1D Missense_Mutation p.R528H 0.23 tolerated_low_confidence(0.08) benign(0.266) TCGA-EJ-5505-01 22 20230164 20230164 G T RTN4R Missense_Mutation p.N164K 0.17 deleterious(0) probably_damaging(1) TCGA-EJ-5505-01 2 10918726 10918726 A C ATP6V1C2 Missense_Mutation p.N331T 0.17 deleterious(0) possibly_damaging(0.848) TCGA-EJ-5505-01 2 209358096 209358096 G T PTH2R Silent p.V455V 0.10 TCGA-EJ-5505-01 2 220396564 220396564 G A ASIC4 Missense_Mutation p.G350S 0.24 deleterious(0.01) possibly_damaging(0.772) TCGA-EJ-5505-01 2 225717687 225717687 G T DOCK10 Missense_Mutation p.H681N 0.18 tolerated(0.1) possibly_damaging(0.861) TCGA-EJ-5505-01 3 167068219 167068219 T C ZBBX Missense_Mutation p.T173A 0.19 deleterious(0.04) possibly_damaging(0.787) TCGA-EJ-5505-01 3 169486066 169486066 A G ACTRT3 Silent p.Y91Y 0.39 TCGA-EJ-5505-01 3 52088081 52088081 T C DUSP7 Missense_Mutation p.N276S 0.21 deleterious(0.02) possibly_damaging(0.656) TCGA-EJ-5505-01 4 155256174 155256174 C G DCHS2 Silent p.G354G 0.20 TCGA-EJ-5505-01 6 31797488 31797488 C G HSPA1B Silent p.A587A 0.16 TCGA-EJ-5505-01 6 32920827 32920827 A T HLA-DMA 5'UTR 0.18 TCGA-EJ-5505-01 6 36927000 36927000 G A PI16 Missense_Mutation p.R84H 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-EJ-5505-01 6 52288788 52288803 CTATGCAATTGTTCGA - EFHC1 Frame_Shift_Del p.Y37Vfs*6 0.22 TCGA-EJ-5505-01 7 140501299 140501299 C A BRAF Missense_Mutation p.G258V 0.12 deleterious(0) probably_damaging(0.959) TCGA-EJ-5505-01 7 6431629 6431629 A G RAC1 Missense_Mutation p.Q61R 0.05 deleterious(0.02) possibly_damaging(0.702) TCGA-EJ-5505-01 9 20620724 20620724 T C MLLT3 Missense_Mutation p.H41R 0.17 tolerated(0.32) benign(0.112) TCGA-EJ-5505-01 9 79002418 79002418 T A RFK Missense_Mutation p.D122V 0.05 deleterious(0) probably_damaging(0.996) TCGA-EJ-5505-01 X 153224170 153224170 A C HCFC1 Silent p.A551A 0.46 TCGA-EJ-5505-01 X 72432915 72432915 C T NAP1L2 3'UTR 0.37 TCGA-EJ-5506-01 10 12143062 12143062 G A DHTKD1 Missense_Mutation p.G593D 0.04 deleterious(0) probably_damaging(1) TCGA-EJ-5506-01 11 43513626 43513626 C T TTC17 Silent p.D1069D 0.03 TCGA-EJ-5506-01 12 104487295 104487295 T G HCFC2 Silent p.A472A 0.04 TCGA-EJ-5506-01 15 65489559 65489559 C T CILP Missense_Mutation p.R1022H 0.06 deleterious(0) probably_damaging(0.996) TCGA-EJ-5506-01 16 31332891 31332891 G A ITGAM Missense_Mutation p.G650R 0.05 deleterious(0) probably_damaging(1) TCGA-EJ-5506-01 17 40476777 40476777 G A STAT3 Nonsense_Mutation p.R518* 0.04 TCGA-EJ-5506-01 1 153283175 153283175 C T PGLYRP3 5'UTR 0.03 TCGA-EJ-5506-01 1 228528530 228528530 G A OBSCN Missense_Mutation p.V6837M 0.29 possibly_damaging(0.849) TCGA-EJ-5506-01 3 142030258 142030258 A T XRN1 3'UTR 0.09 TCGA-EJ-5506-01 5 140235694 140235694 G A PCDHA10 Missense_Mutation p.A21T 0.10 tolerated_low_confidence(0.4) benign(0.02) TCGA-EJ-5506-01 5 140720213 140720213 G A PCDHGA2 Missense_Mutation p.A559T 0.05 tolerated_low_confidence(0.49) benign(0.005) TCGA-EJ-5506-01 6 143089660 143089660 G A HIVEP2 Missense_Mutation p.A1734V 0.05 tolerated(0.32) benign(0.003) TCGA-EJ-5506-01 8 8749969 8749969 C A MFHAS1 Silent p.L200L 0.12 TCGA-EJ-5507-01 11 55681278 55681278 G A OR5W2 Missense_Mutation p.R261W 0.35 deleterious(0.02) possibly_damaging(0.519) TCGA-EJ-5507-01 11 64802432 64802432 C T SNX15 Missense_Mutation p.R124W 0.29 deleterious(0) probably_damaging(0.946) TCGA-EJ-5507-01 11 69063421 69063425 CTTTA - MYEOV Frame_Shift_Del p.F169Sfs*4 0.29 TCGA-EJ-5507-01 12 102067275 102067275 G A MYBPC1 Missense_Mutation p.R888H 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-EJ-5507-01 12 62688039 62688039 G A USP15 Missense_Mutation p.D57N 0.31 tolerated(0.07) benign(0.007) TCGA-EJ-5507-01 13 45594565 45594565 T A GPALPP1 Splice_Site p.X268_splice 0.05 TCGA-EJ-5507-01 16 72827588 72827588 C T ZFHX3 Missense_Mutation p.R2998Q 0.18 unknown(0) TCGA-EJ-5507-01 17 61557835 61557835 C G ACE Missense_Mutation p.R265G 0.38 tolerated(0.25) possibly_damaging(0.742) TCGA-EJ-5507-01 17 65021047 65021047 G A CACNG4 Missense_Mutation p.G126S 0.46 tolerated(0.06) benign(0.34) TCGA-EJ-5507-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.50 tolerated(0.11) benign(0.308) TCGA-EJ-5507-01 18 30903561 30903561 C T CCDC178 Missense_Mutation p.E306K 0.19 tolerated(0.35) benign(0.064) TCGA-EJ-5507-01 19 57640708 57640708 T C USP29 Missense_Mutation p.L222S 0.29 tolerated(0.19) benign(0.005) TCGA-EJ-5507-01 1 149884960 149884960 G A SV2A Nonsense_Mutation p.R145* 0.38 TCGA-EJ-5507-01 1 164789324 164789324 T G PBX1 Missense_Mutation p.F338C 0.13 deleterious(0.02) possibly_damaging(0.873) TCGA-EJ-5507-01 1 26801752 26801752 T A HMGN2 3'UTR 0.30 TCGA-EJ-5507-01 1 70801756 70801756 T C ANKRD13C Missense_Mutation p.M153V 0.18 tolerated(0.06) benign(0.17) TCGA-EJ-5507-01 1 95310851 95310851 G T SLC44A3 Missense_Mutation p.L301F 0.31 deleterious(0) possibly_damaging(0.517) TCGA-EJ-5507-01 20 39990961 39990961 G A EMILIN3 Silent p.A416A 0.35 TCGA-EJ-5507-01 22 26688423 26688423 C A SEZ6L Nonsense_Mutation p.S49* 0.32 TCGA-EJ-5507-01 22 31059967 31059967 G A DUSP18 Silent p.F8F 0.30 TCGA-EJ-5507-01 2 167304172 167304172 G T SCN7A Missense_Mutation p.T446K 0.24 tolerated(0.38) benign(0.03) TCGA-EJ-5507-01 2 97369281 97369281 G A LMAN2L 3'Flank 0.11 TCGA-EJ-5507-01 3 129247552 129247552 C T RHO 5'UTR 0.26 TCGA-EJ-5507-01 3 154860109 154860109 C A MME Missense_Mutation p.A393D 0.05 tolerated(0.6) possibly_damaging(0.713) TCGA-EJ-5507-01 3 38048106 38048106 C T VILL Missense_Mutation p.T791M 0.35 tolerated(0.19) benign(0.004) TCGA-EJ-5507-01 3 47036899 47036899 A G NBEAL2 Silent p.A558A 0.33 TCGA-EJ-5507-01 3 51347719 51347719 C T DOCK3 Silent p.F993F 0.38 TCGA-EJ-5507-01 4 187455565 187455565 C T MTNR1A Missense_Mutation p.V111I 0.14 deleterious(0.04) possibly_damaging(0.603) TCGA-EJ-5507-01 4 62813870 62813870 G A LPHN3 Missense_Mutation p.R826H 0.35 tolerated(0.08) benign(0.02) TCGA-EJ-5507-01 5 908175 908175 G A TRIP13 Missense_Mutation p.V249M 0.23 deleterious(0) probably_damaging(0.982) TCGA-EJ-5507-01 6 31930258 31930258 G C SKIV2L Missense_Mutation p.K369N 0.34 deleterious(0) probably_damaging(1) TCGA-EJ-5507-01 6 51524058 51524058 G A PKHD1 Silent p.C3622C 0.28 TCGA-EJ-5507-01 7 106509965 106509965 C T PIK3CG Silent p.D653D 0.25 TCGA-EJ-5507-01 7 129096398 129096398 C T STRIP2 Missense_Mutation p.S318F 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-EJ-5507-01 7 21469876 21469876 C G SP4 Missense_Mutation p.P365A 0.05 tolerated(0.73) possibly_damaging(0.539) TCGA-EJ-5507-01 7 42262830 42262830 G C GLI3 Missense_Mutation p.S8C 0.06 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-EJ-5507-01 9 138586195 138586195 C T SOHLH1 Intron 0.19 TCGA-EJ-5507-01 9 77448965 77448965 T C TRPM6 Silent p.G206G 0.34 TCGA-EJ-5507-01 9 93606305 93606305 G A SYK Missense_Mutation p.R42H 0.33 deleterious(0) probably_damaging(1) TCGA-EJ-5508-01 11 11373509 11373509 G A CSNK2A3 Silent p.A386A 0.29 TCGA-EJ-5508-01 11 71850178 71850178 G T FOLR3 Silent p.G156G 0.11 TCGA-EJ-5508-01 12 2912357 2912357 C G FKBP4 Missense_Mutation p.T438R 0.12 tolerated(0.3) benign(0.043) TCGA-EJ-5508-01 12 32871615 32871615 A G DNM1L Missense_Mutation p.M220V 0.04 deleterious(0) probably_damaging(0.979) TCGA-EJ-5508-01 13 21987884 21987895 GTTCCTTTTCAG - ZDHHC20 In_Frame_Del p.S89_R93delinsC 0.09 TCGA-EJ-5508-01 13 96579562 96579562 A G UGGT2 Missense_Mutation p.I669T 0.04 deleterious(0) benign(0.075) TCGA-EJ-5508-01 14 36039876 36039876 T G RALGAPA1 Silent p.T1975T 0.07 TCGA-EJ-5508-01 15 41060077 41060077 A T DNAJC17 3'UTR 0.13 TCGA-EJ-5508-01 15 42133437 42133437 G A PLA2G4B Missense_Mutation p.R365H 0.11 tolerated(0.22) benign(0.28) TCGA-EJ-5508-01 15 54006701 54006701 G T WDR72 Missense_Mutation p.S174Y 0.10 deleterious(0) probably_damaging(0.954) TCGA-EJ-5508-01 15 74426317 74426317 G A ISLR2 Missense_Mutation p.V408I 0.13 tolerated(0.25) probably_damaging(0.972) TCGA-EJ-5508-01 16 10971180 10971180 C A CIITA 5'UTR 0.07 TCGA-EJ-5508-01 19 47575255 47575255 A C ZC3H4 Silent p.P642P 0.26 TCGA-EJ-5508-01 19 54754760 54754760 C T LILRB5 Missense_Mutation p.A556T 0.09 tolerated(0.1) possibly_damaging(0.837) TCGA-EJ-5508-01 19 8176568 8176568 G A FBN3 Missense_Mutation p.R1350C 0.16 deleterious(0.02) possibly_damaging(0.893) TCGA-EJ-5508-01 1 176853612 176853612 G A ASTN1 Missense_Mutation p.T1030M 0.15 tolerated(0.2) benign(0.024) TCGA-EJ-5508-01 1 186915809 186915809 A G PLA2G4A Silent p.K358K 0.16 TCGA-EJ-5508-01 1 22056252 22056252 C A USP48 Missense_Mutation p.M415I 0.03 deleterious(0) probably_damaging(0.976) TCGA-EJ-5508-01 1 45269352 45269352 G T PLK3 Missense_Mutation p.A385S 0.15 tolerated(1) benign(0.006) TCGA-EJ-5508-01 1 6659137 6659137 G A KLHL21 Missense_Mutation p.A466V 0.12 tolerated(1) benign(0) TCGA-EJ-5508-01 21 30255333 30255333 A G N6AMT1 Silent p.S65S 0.15 TCGA-EJ-5508-01 2 168105389 168105389 C T XIRP2 Missense_Mutation p.S2496F 0.05 probably_damaging(0.937) TCGA-EJ-5508-01 3 50332156 50332156 C A HYAL3 Missense_Mutation p.G293V 0.17 tolerated(0.64) possibly_damaging(0.493) TCGA-EJ-5508-01 5 148206406 148206406 C T ADRB2 Silent p.P4P 0.06 TCGA-EJ-5508-01 6 123539713 123539713 C A TRDN 3'UTR 0.12 TCGA-EJ-5508-01 6 151161999 151161999 A C PLEKHG1 Missense_Mutation p.K1375N 0.12 deleterious(0) probably_damaging(0.999) TCGA-EJ-5508-01 6 41029415 41029415 G A APOBEC2 Silent p.P160P 0.19 TCGA-EJ-5508-01 7 66296183 66296183 G A GTF2IRD1P1 Intron 0.13 TCGA-EJ-5508-01 7 87104731 87104731 C T ABCB4 Silent p.A17A 0.12 TCGA-EJ-5508-01 9 109746677 109746677 G C ZNF462 Missense_Mutation p.R2348P 0.15 probably_damaging(0.998) TCGA-EJ-5508-01 9 18928742 18928742 G A FAM154A Missense_Mutation p.R245W 0.19 deleterious(0) probably_damaging(0.967) TCGA-EJ-5508-01 X 135593930 135593930 T G HTATSF1 Missense_Mutation p.S676A 0.08 deleterious_low_confidence(0.01) benign(0.184) TCGA-EJ-5508-01 X 15342939 15342939 T C PIGA Missense_Mutation p.I346V 0.04 tolerated(1) benign(0.005) TCGA-EJ-5509-01 10 81915551 81915551 C T ANXA11 3'UTR 0.30 TCGA-EJ-5509-01 10 82185669 82185669 C T FAM213A Silent p.G106G 0.28 TCGA-EJ-5509-01 11 31312310 31312310 G C DCDC1 Missense_Mutation p.L282V 0.28 deleterious(0.03) probably_damaging(0.97) TCGA-EJ-5509-01 11 47360202 47360202 C T MYBPC3 Missense_Mutation p.R726H 0.28 tolerated(0.35) benign(0.011) TCGA-EJ-5509-01 11 64116832 64116832 G T CCDC88B Missense_Mutation p.K882N 0.13 deleterious(0.01) benign(0.035) TCGA-EJ-5509-01 11 6519277 6519277 C A DNHD1 5'UTR 0.06 TCGA-EJ-5509-01 12 58160784 58160784 C T CYP27B1 Missense_Mutation p.R14H 0.03 tolerated_low_confidence(0.12) possibly_damaging(0.563) TCGA-EJ-5509-01 12 88568465 88568465 T C TMTC3 Silent p.D427D 0.04 TCGA-EJ-5509-01 16 75669946 75669946 C A KARS Missense_Mutation p.R206L 0.04 deleterious(0.01) benign(0.146) TCGA-EJ-5509-01 17 47696425 47696425 A C SPOP Missense_Mutation p.F133C 0.27 deleterious(0.01) probably_damaging(1) TCGA-EJ-5509-01 17 73851410 73851410 A C WBP2 5'UTR 0.25 TCGA-EJ-5509-01 17 75478262 75478262 C T SEPT9 Missense_Mutation p.A253V 0.19 tolerated(0.16) benign(0.184) TCGA-EJ-5509-01 1 100152323 100152323 C T PALMD Missense_Mutation p.R115W 0.20 deleterious(0) probably_damaging(0.996) TCGA-EJ-5509-01 1 12921385 12921385 C T PRAMEF2 Silent p.D392D 0.16 TCGA-EJ-5509-01 20 57769548 57769548 G A ZNF831 Silent p.T1158T 0.28 TCGA-EJ-5509-01 21 44589279 44589279 G A CRYAA Missense_Mutation p.D24N 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EJ-5509-01 2 119915187 119915187 C G C1QL2 Missense_Mutation p.W220S 0.13 deleterious(0.04) probably_damaging(0.926) TCGA-EJ-5509-01 2 128050211 128050211 G A ERCC3 Missense_Mutation p.P149L 0.04 deleterious(0) probably_damaging(0.996) TCGA-EJ-5509-01 2 187627272 187627272 A T FAM171B Missense_Mutation p.I735F 0.28 tolerated(0.19) possibly_damaging(0.609) TCGA-EJ-5509-01 2 189875581 189875581 A T COL3A1 Nonsense_Mutation p.K1407* 0.04 TCGA-EJ-5509-01 2 99012981 99012981 A G CNGA3 Missense_Mutation p.T450A 0.30 tolerated(0.53) benign(0.019) TCGA-EJ-5509-01 4 153881743 153881743 C T FHDC1 Silent p.G230G 0.12 TCGA-EJ-5509-01 4 46067560 46067560 G T GABRG1 Missense_Mutation p.D121E 0.17 deleterious(0) probably_damaging(0.994) TCGA-EJ-5509-01 4 74005375 74005375 T G ANKRD17 Silent p.G986G 0.21 TCGA-EJ-5509-01 6 27861558 27861558 G A HIST1H2BO Silent p.E106E 0.06 TCGA-EJ-5509-01 7 100693835 100693835 T C MUC17 Silent p.L4265L 0.08 TCGA-EJ-5509-01 7 107575964 107575964 C T LAMB1 Missense_Mutation p.E1362K 0.32 tolerated(0.49) benign(0.04) TCGA-EJ-5509-01 7 132193088 132193088 T C PLXNA4 Missense_Mutation p.Y122C 0.04 deleterious(0) probably_damaging(1) TCGA-EJ-5509-01 8 37794557 37794557 C T GOT1L1 Missense_Mutation p.V180I 0.07 tolerated(1) benign(0.006) TCGA-EJ-5509-01 X 44938412 44938412 A G KDM6A Missense_Mutation p.K987R 0.08 deleterious(0.02) probably_damaging(0.987) TCGA-EJ-5510-01 10 112838922 112838922 G T ADRA2A Missense_Mutation p.V390L 0.29 deleterious(0) probably_damaging(0.989) TCGA-EJ-5510-01 10 32856778 32856778 G A CCDC7 Missense_Mutation p.G460S 0.11 tolerated(0.06) probably_damaging(0.927) TCGA-EJ-5510-01 10 32856779 32856779 G T CCDC7 Missense_Mutation p.G460V 0.11 deleterious(0) probably_damaging(0.981) TCGA-EJ-5510-01 11 104915235 104915235 T G CARD16 Missense_Mutation p.K53T 0.17 deleterious(0) probably_damaging(0.99) TCGA-EJ-5510-01 11 43345105 43345105 A C API5 Silent p.L223L 0.17 TCGA-EJ-5510-01 11 70319095 70319095 T C SHANK2 Missense_Mutation p.N1811S 0.18 deleterious(0) possibly_damaging(0.621) TCGA-EJ-5510-01 12 120635152 120635152 C T RPLP0 Silent p.T255T 0.17 TCGA-EJ-5510-01 12 43777766 43777766 A G ADAMTS20 Silent p.C1489C 0.06 TCGA-EJ-5510-01 12 53238473 53238473 G A KRT78 Missense_Mutation p.T264M 0.15 tolerated(0.19) benign(0.023) TCGA-EJ-5510-01 13 100206634 100206634 C T TM9SF2 Missense_Mutation p.P522L 0.21 tolerated(0.37) possibly_damaging(0.685) TCGA-EJ-5510-01 13 109779876 109779876 G A MYO16 Silent p.A1321A 0.11 TCGA-EJ-5510-01 13 39357242 39357242 G A FREM2 Missense_Mutation p.V1893I 0.21 tolerated(1) benign(0.002) TCGA-EJ-5510-01 14 53245162 53245163 AG - GNPNAT1 Frame_Shift_Del p.L141Yfs*15 0.17 TCGA-EJ-5510-01 17 6716186 6716186 C G TEKT1 Missense_Mutation p.K272N 0.16 tolerated(0.1) probably_damaging(0.972) TCGA-EJ-5510-01 1 198233329 198233329 A G NEK7 Silent p.E112E 0.11 TCGA-EJ-5510-01 1 82409004 82409004 A G LPHN2 Missense_Mutation p.Y250C 0.18 deleterious(0) probably_damaging(0.993) TCGA-EJ-5510-01 21 38858790 38858790 G A DYRK1A Missense_Mutation p.V180M 0.18 tolerated(0.07) benign(0.03) TCGA-EJ-5510-01 2 136610460 136610460 C T MCM6 Missense_Mutation p.R551H 0.16 tolerated(0.74) benign(0.26) TCGA-EJ-5510-01 3 63898514 63898514 G A ATXN7 Silent p.E80E 0.15 TCGA-EJ-5510-01 3 64554181 64554181 G A ADAMTS9 Nonsense_Mutation p.Q1463* 0.18 TCGA-EJ-5510-01 4 153897726 153897726 C T FHDC1 Missense_Mutation p.P1095S 0.13 tolerated(0.58) benign(0.007) TCGA-EJ-5510-01 6 26428149 26428149 A G BTN2A3P RNA 0.22 TCGA-EJ-5510-01 6 33138676 33138676 C T COL11A2 Missense_Mutation p.G1043R 0.05 probably_damaging(0.98) TCGA-EJ-5510-01 9 104239189 104239189 G T TMEM246 Missense_Mutation p.S62R 0.23 deleterious(0) possibly_damaging(0.858) TCGA-EJ-5510-01 X 117959282 117959282 G A ZCCHC12 Missense_Mutation p.M25I 0.36 tolerated(0.18) benign(0.019) TCGA-EJ-5510-01 X 37027785 37027785 C T FAM47C Silent p.R434R 0.46 TCGA-EJ-5510-01 X 70349258 70349258 C T MED12 Missense_Mutation p.L1224F 0.25 probably_damaging(0.999) TCGA-EJ-5511-01 10 55582081 55582081 G T PCDH15 Missense_Mutation p.T1804K 0.07 tolerated_low_confidence(0.08) unknown(0) TCGA-EJ-5511-01 10 98761035 98761035 G A SLIT1 Missense_Mutation p.T1480M 0.42 deleterious(0.02) benign(0.041) TCGA-EJ-5511-01 11 105804548 105804548 G A GRIA4 Missense_Mutation p.R716H 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-5511-01 11 108192065 108192065 G A ATM Missense_Mutation p.E2164K 0.34 deleterious(0) probably_damaging(1) TCGA-EJ-5511-01 11 133790584 133790584 G T IGSF9B Silent p.I1012I 0.07 TCGA-EJ-5511-01 11 1432631 1432631 C - BRSK2 5'UTR 0.39 TCGA-EJ-5511-01 12 15774164 15774164 G C EPS8 3'UTR 0.43 TCGA-EJ-5511-01 13 58207456 58207456 G T PCDH17 Missense_Mutation p.G259V 0.41 deleterious(0) probably_damaging(0.988) TCGA-EJ-5511-01 15 73616150 73616150 C A HCN4 Missense_Mutation p.A762S 0.14 tolerated(0.34) unknown(0) TCGA-EJ-5511-01 15 85326137 85326137 G A ZNF592 Silent p.E77E 0.09 TCGA-EJ-5511-01 16 67702586 67702586 C T C16orf86 3'UTR 0.39 TCGA-EJ-5511-01 17 19290477 19290477 T C MFAP4 5'UTR 0.31 TCGA-EJ-5511-01 17 27051350 27051370 AATAAAGGACAAGGACTTCAG - TLCD1 3'UTR 0.32 TCGA-EJ-5511-01 17 30986138 30986138 G A MYO1D Silent p.F780F 0.34 TCGA-EJ-5511-01 17 32597252 32597259 GAGACCAA - CCL7 5'UTR 0.18 TCGA-EJ-5511-01 17 34233761 34233761 A G AC015849.16 RNA 0.45 TCGA-EJ-5511-01 17 37898891 37898891 T G GRB7 Missense_Mutation p.S99R 0.36 tolerated(0.05) probably_damaging(0.96) TCGA-EJ-5511-01 17 41611325 41611325 G A ETV4 Silent p.I95I 0.65 TCGA-EJ-5511-01 17 42635479 42635479 C T FZD2 Silent p.F141F 0.44 TCGA-EJ-5511-01 17 42635653 42635653 C A FZD2 Missense_Mutation p.F199L 0.50 tolerated(0.14) benign(0.002) TCGA-EJ-5511-01 17 42635702 42635702 C G FZD2 Missense_Mutation p.L216V 0.50 tolerated(0.55) benign(0.147) TCGA-EJ-5511-01 17 42636061 42636061 C G FZD2 Nonsense_Mutation p.Y335* 0.33 TCGA-EJ-5511-01 17 42636173 42636173 C T FZD2 Missense_Mutation p.H373Y 0.35 deleterious(0) probably_damaging(1) TCGA-EJ-5511-01 17 42636211 42636211 C T FZD2 Silent p.I385I 0.35 TCGA-EJ-5511-01 17 42636499 42636499 C T FZD2 Silent p.F481F 0.42 TCGA-EJ-5511-01 19 34180279 34180279 G A CHST8 Missense_Mutation p.A38T 0.33 tolerated(0.69) benign(0.001) TCGA-EJ-5511-01 1 112524316 112524316 C T KCND3 Missense_Mutation p.G345S 0.45 tolerated(0.11) benign(0.001) TCGA-EJ-5511-01 1 145015938 145015938 C T RP11-326G21.1 5'Flank 0.12 TCGA-EJ-5511-01 1 210977309 210977309 C A KCNH1 Missense_Mutation p.K554N 0.38 deleterious(0.03) benign(0.094) TCGA-EJ-5511-01 1 235345290 235345317 CACTGGGTGAACAACTCTCCTCTTCAGC - ARID4B Frame_Shift_Del p.A973* 0.31 TCGA-EJ-5511-01 1 59805628 59805629 AG - FGGY Splice_Site p.X68_splice 0.17 TCGA-EJ-5511-01 1 89523762 89523762 C T GBP1 Missense_Mutation p.V263M 0.06 tolerated(0.06) possibly_damaging(0.557) TCGA-EJ-5511-01 1 91846539 91846539 G A HFM1 Missense_Mutation p.P268L 0.11 deleterious(0.04) benign(0.157) TCGA-EJ-5511-01 20 22563512 22563512 G A FOXA2 Missense_Mutation p.A123V 0.34 tolerated(0.09) benign(0.37) TCGA-EJ-5511-01 20 57564072 57564072 T A NELFCD Missense_Mutation p.V185D 0.05 deleterious(0) probably_damaging(0.948) TCGA-EJ-5511-01 2 179425049 179425050 - T TTN Frame_Shift_Ins p.P28604Tfs*4 0.12 TCGA-EJ-5511-01 2 210968826 210968826 A C KANSL1L Splice_Site p.X476_splice 0.08 TCGA-EJ-5511-01 2 234296911 234296912 - A DGKD Frame_Shift_Ins p.E57Rfs*20 0.08 TCGA-EJ-5511-01 3 121137219 121137219 C A STXBP5L Missense_Mutation p.L1112I 0.09 tolerated(0.39) benign(0.033) TCGA-EJ-5511-01 3 48896044 48896044 T G SLC25A20 Missense_Mutation p.N247H 0.39 tolerated(0.19) benign(0.018) TCGA-EJ-5511-01 4 91229663 91229663 T C CCSER1 Silent p.S76S 0.37 TCGA-EJ-5511-01 5 156184679 156184679 C T SGCD Silent p.C221C 0.37 TCGA-EJ-5511-01 5 179731798 179731798 C T GFPT2 Missense_Mutation p.A606T 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-EJ-5511-01 5 52780040 52780040 C A FST Missense_Mutation p.T213N 0.12 deleterious(0) possibly_damaging(0.882) TCGA-EJ-5511-01 6 146243842 146243842 C G SHPRH Missense_Mutation p.A1226P 0.22 deleterious(0) probably_damaging(0.988) TCGA-EJ-5511-01 6 152832185 152832185 T A SYNE1 Silent p.I121I 0.15 TCGA-EJ-5511-01 6 28403808 28403808 G A ZSCAN23 Missense_Mutation p.P79L 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-5511-01 6 36767797 36767797 G T CPNE5 Silent p.R78R 0.06 TCGA-EJ-5511-01 7 150217708 150217708 C T GIMAP7 Missense_Mutation p.R216W 0.39 tolerated(0.14) benign(0.052) TCGA-EJ-5511-01 7 91712644 91712644 T G AKAP9 Missense_Mutation p.L2774R 0.13 benign(0.17) TCGA-EJ-5511-01 8 105509611 105509611 G T LRP12 Missense_Mutation p.T390N 0.11 deleterious(0.01) benign(0.125) TCGA-EJ-5511-01 8 3265577 3265577 C T CSMD1 Missense_Mutation p.A639T 0.20 benign(0.008) TCGA-EJ-5511-01 9 112185102 112185102 C T PTPN3 Silent p.V344V 0.40 TCGA-EJ-5511-01 9 134497351 134497351 C T RAPGEF1 Silent p.S580S 0.37 TCGA-EJ-5511-01 9 94486842 94486842 T C ROR2 Missense_Mutation p.Y645C 0.40 deleterious(0) probably_damaging(1) TCGA-EJ-5511-01 X 117053579 117053579 G C KLHL13 Missense_Mutation p.L162V 0.07 deleterious(0) possibly_damaging(0.872) TCGA-EJ-5511-01 X 23934359 23934359 T C CXorf58 Missense_Mutation p.F113L 0.71 deleterious(0.05) benign(0.406) TCGA-EJ-5512-01 10 31133925 31133925 C G ZNF438 Missense_Mutation p.G818R 0.18 deleterious(0.03) benign(0.172) TCGA-EJ-5512-01 12 14628823 14628823 G T ATF7IP Splice_Site p.X955_splice 0.15 TCGA-EJ-5512-01 14 23901077 23901077 C T MYH7 Missense_Mutation p.G178R 0.19 deleterious(0) probably_damaging(0.953) TCGA-EJ-5512-01 15 45965849 45965849 G T SQRDL Silent p.S168S 0.18 TCGA-EJ-5512-01 17 62007651 62007651 G A CD79B Silent p.S72S 0.12 TCGA-EJ-5512-01 1 158669837 158669837 G T OR6K2 Silent p.V202V 0.14 TCGA-EJ-5512-01 1 186915867 186915867 G A PLA2G4A Missense_Mutation p.V378I 0.15 tolerated(0.21) benign(0.055) TCGA-EJ-5512-01 1 202119407 202119407 G A PTPN7 Intron 0.12 TCGA-EJ-5512-01 22 44527372 44527372 C G PARVB Missense_Mutation p.L161V 0.08 deleterious(0) probably_damaging(0.996) TCGA-EJ-5512-01 2 68384604 68384604 G A WDR92 5'UTR 0.06 TCGA-EJ-5512-01 5 22142968 22142968 A C CDH12 Intron 0.16 TCGA-EJ-5512-01 6 106764041 106764041 G A ATG5 Nonsense_Mutation p.R15* 0.15 TCGA-EJ-5512-01 6 88138375 88138375 C G C6ORF165 Missense_Mutation p.T331S 0.09 tolerated(0.61) benign(0.034) TCGA-EJ-5512-01 7 141315346 141315346 G T AGK Nonsense_Mutation p.E167* 0.16 TCGA-EJ-5512-01 7 141315347 141315347 A T AGK Missense_Mutation p.E167V 0.17 tolerated(0.12) benign(0.056) TCGA-EJ-5512-01 8 125597387 125597387 C T MTSS1 Missense_Mutation p.R134H 0.15 deleterious(0) benign(0.089) TCGA-EJ-5512-01 8 59515931 59515931 C T NSMAF Missense_Mutation p.E326K 0.16 tolerated(0.14) benign(0.046) TCGA-EJ-5512-01 9 18662047 18662047 G A ADAMTSL1 Missense_Mutation p.C354Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-EJ-5512-01 9 92220950 92220950 C A GADD45G Missense_Mutation p.R146S 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-5512-01 X 146341191 146341191 C T MIR509-3 RNA 0.38 TCGA-EJ-5514-01 10 118357365 118357365 C T PNLIPRP1 Silent p.F200F 0.26 TCGA-EJ-5514-01 10 18828621 18828621 G A CACNB2 Missense_Mutation p.E651K 0.06 tolerated_low_confidence(0.06) benign(0.14) TCGA-EJ-5514-01 11 108031665 108031665 C T NPAT Missense_Mutation p.R1383H 0.24 deleterious(0) probably_damaging(1) TCGA-EJ-5514-01 11 124756546 124756546 C T ROBO4 Missense_Mutation p.E870K 0.30 deleterious(0.02) benign(0.305) TCGA-EJ-5514-01 11 55433602 55433603 - A OR4C6 3'UTR 0.26 TCGA-EJ-5514-01 12 90020309 90020309 T C ATP2B1 Missense_Mutation p.K351E 0.10 tolerated(0.21) benign(0.237) TCGA-EJ-5514-01 13 33252986 33252986 A G PDS5B Missense_Mutation p.H326R 0.16 tolerated(0.17) benign(0.121) TCGA-EJ-5514-01 15 42602622 42602622 G A GANC Silent p.S288S 0.34 TCGA-EJ-5514-01 15 83240325 83240325 C T CPEB1 Intron 0.22 TCGA-EJ-5514-01 16 23080918 23080918 T - USP31 Frame_Shift_Del p.F837Lfs*2 0.22 TCGA-EJ-5514-01 16 24373178 24373178 C T CACNG3 Silent p.P314P 0.26 TCGA-EJ-5514-01 16 83998851 83998851 T C OSGIN1 Missense_Mutation p.F225L 0.25 tolerated(0.28) benign(0.166) TCGA-EJ-5514-01 17 57774721 57774722 - A PTRH2 3'UTR 0.33 TCGA-EJ-5514-01 17 73235138 73235138 C T GGA3 Missense_Mutation p.D603N 0.22 deleterious(0) probably_damaging(0.999) TCGA-EJ-5514-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.38 deleterious(0) probably_damaging(0.997) TCGA-EJ-5514-01 19 3589510 3589510 C A GIPC3 Missense_Mutation p.T221N 0.11 deleterious(0) probably_damaging(0.995) TCGA-EJ-5514-01 19 5598870 5598870 G A SAFB2 Silent p.V572V 0.29 TCGA-EJ-5514-01 1 181762828 181762828 G A CACNA1E Missense_Mutation p.V1976M 0.18 tolerated(0.33) possibly_damaging(0.713) TCGA-EJ-5514-01 1 33291705 33291705 T C S100PBP Missense_Mutation p.M2T 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-EJ-5514-01 1 44686333 44686333 C A DMAP1 3'UTR 0.08 TCGA-EJ-5514-01 1 55280637 55280637 C T C1orf177 Silent p.P325P 0.23 TCGA-EJ-5514-01 20 47864642 47864642 A G ZNFX1 Missense_Mutation p.L1640P 0.30 deleterious(0) possibly_damaging(0.905) TCGA-EJ-5514-01 22 38201489 38201489 C T H1F0 5'UTR 0.33 TCGA-EJ-5514-01 2 213886796 213886796 C G IKZF2 Silent p.L211L 0.05 TCGA-EJ-5514-01 2 29148007 29148007 T G WDR43 Silent p.T358T 0.23 TCGA-EJ-5514-01 2 61705850 61705850 G A XPO1 3'UTR 0.41 TCGA-EJ-5514-01 3 140123402 140123402 C T CLSTN2 Missense_Mutation p.A144V 0.18 deleterious(0) possibly_damaging(0.589) TCGA-EJ-5514-01 3 185542687 185542687 T C IGF2BP2 Missense_Mutation p.Q21R 0.24 tolerated(0.29) benign(0.438) TCGA-EJ-5514-01 4 185340707 185340707 G - IRF2 Frame_Shift_Del p.Q35Rfs*35 0.35 TCGA-EJ-5514-01 4 74043162 74043162 C A ANKRD17 Missense_Mutation p.G161V 0.03 possibly_damaging(0.827) TCGA-EJ-5514-01 4 90872798 90872798 G C MMRN1 Missense_Mutation p.G1054A 0.27 deleterious(0) probably_damaging(1) TCGA-EJ-5514-01 5 140237390 140237390 C T PCDHA10 Missense_Mutation p.A586V 0.33 tolerated_low_confidence(0.11) benign(0.021) TCGA-EJ-5514-01 5 156670752 156670752 C T ITK Missense_Mutation p.R394W 0.34 deleterious(0) probably_damaging(0.972) TCGA-EJ-5514-01 5 79026181 79026181 C T CMYA5 Silent p.I531I 0.35 TCGA-EJ-5514-01 5 82808055 82808055 C T VCAN Silent p.C294C 0.09 TCGA-EJ-5514-01 6 111912533 111912533 G T TRAF3IP2 Missense_Mutation p.P253T 0.40 deleterious(0.03) benign(0.367) TCGA-EJ-5514-01 6 32726626 32726626 C T HLA-DQB2 Splice_Site p.X216_splice 0.28 TCGA-EJ-5514-01 6 7405482 7405482 A G RIOK1 Missense_Mutation p.D366G 0.28 tolerated(0.09) benign(0.075) TCGA-EJ-5514-01 7 100684772 100684772 A G MUC17 Missense_Mutation p.T3359A 0.22 possibly_damaging(0.708) TCGA-EJ-5514-01 7 95750981 95750981 A G SLC25A13 Silent p.I610I 0.25 TCGA-EJ-5514-01 9 121976298 121976298 G A BRINP1 Missense_Mutation p.P274L 0.23 deleterious(0) benign(0.098) TCGA-EJ-5514-01 X 2407936 2407936 G A ZBED1 Silent p.I275I 0.27 TCGA-EJ-5514-01 X 49099406 49099406 C A CCDC22 Missense_Mutation p.A139E 0.44 tolerated(0.29) possibly_damaging(0.672) TCGA-EJ-5514-01 X 601572 601572 G A SHOX Missense_Mutation p.R168Q 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-EJ-5515-01 10 49654442 49654442 G T ARHGAP22 Missense_Mutation p.P713T 0.06 deleterious_low_confidence(0.01) benign(0.012) TCGA-EJ-5515-01 11 108002646 108002646 G T ACAT1 Missense_Mutation p.V29L 0.05 tolerated(0.82) benign(0.001) TCGA-EJ-5515-01 11 66082756 66082756 C T CD248 Silent p.Q581Q 0.05 TCGA-EJ-5515-01 15 74914890 74914890 G C CLK3 Missense_Mutation p.L322F 0.04 tolerated(0.15) benign(0.036) TCGA-EJ-5515-01 17 33690215 33690215 G T SLFN11 Silent p.I204I 0.04 TCGA-EJ-5515-01 17 57076695 57076695 C A TRIM37 3'UTR 0.04 TCGA-EJ-5515-01 19 12940772 12940772 G A RTBDN Nonsense_Mutation p.R40* 0.06 TCGA-EJ-5515-01 19 53993763 53993763 G C ZNF813 Missense_Mutation p.D93H 0.07 tolerated(0.07) benign(0.167) TCGA-EJ-5515-01 1 41483497 41483497 C T SLFNL1 Missense_Mutation p.G256D 0.05 deleterious(0) probably_damaging(0.999) TCGA-EJ-5515-01 20 49620863 49620863 C A KCNG1 Missense_Mutation p.V419F 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-EJ-5515-01 2 99985894 99985894 T C EIF5B Missense_Mutation p.M476T 0.10 benign(0) TCGA-EJ-5515-01 7 81359036 81359036 G T HGF Missense_Mutation p.Q309K 0.07 tolerated(0.68) probably_damaging(0.996) TCGA-EJ-5515-01 7 82474612 82474612 C T PCLO Missense_Mutation p.S4674N 0.09 unknown(0) TCGA-EJ-5515-01 9 104314514 104314514 A T RNF20 Missense_Mutation p.K500N 0.06 deleterious(0) benign(0.403) TCGA-EJ-5515-01 9 107367082 107367082 G A OR13C2 Missense_Mutation p.T276I 0.05 tolerated(0.43) probably_damaging(0.95) TCGA-EJ-5515-01 9 125613481 125613481 T C RC3H2 Missense_Mutation p.S1087G 0.05 tolerated_low_confidence(0.12) benign(0.006) TCGA-EJ-5516-01 10 21962615 21962615 T A MLLT10 Missense_Mutation p.V463E 0.04 deleterious(0.01) possibly_damaging(0.748) TCGA-EJ-5516-01 11 18195494 18195494 C T MRGPRX4 Missense_Mutation p.P231S 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-EJ-5516-01 11 18579845 18579845 G C UEVLD Silent p.L215L 0.06 TCGA-EJ-5516-01 12 56811998 56811998 T C TIMELESS Missense_Mutation p.H1125R 0.14 tolerated_low_confidence(0.52) benign(0.002) TCGA-EJ-5516-01 15 39874829 39874829 A G THBS1 Missense_Mutation p.Y168C 0.05 deleterious(0) probably_damaging(0.98) TCGA-EJ-5516-01 15 43827082 43827082 G A PPIP5K1 Silent p.T1364T 0.04 TCGA-EJ-5516-01 16 22278045 22278045 C T EEF2K Missense_Mutation p.R538C 0.09 deleterious(0) probably_damaging(1) TCGA-EJ-5516-01 17 10310244 10310244 A G MYH8 Missense_Mutation p.V673A 0.15 deleterious(0.01) benign(0.379) TCGA-EJ-5516-01 19 5456787 5456787 C T ZNRF4 Nonsense_Mutation p.Q429* 0.19 TCGA-EJ-5516-01 1 12336133 12336133 C T VPS13D Nonsense_Mutation p.R830* 0.06 TCGA-EJ-5516-01 1 152975765 152975765 G T SPRR3 Missense_Mutation p.C90F 0.20 tolerated(0.7) possibly_damaging(0.543) TCGA-EJ-5516-01 1 158325255 158325255 G T CD1E Missense_Mutation p.R174L 0.21 tolerated(0.29) benign(0.002) TCGA-EJ-5516-01 1 62672762 62672762 T A L1TD1 Missense_Mutation p.S154R 0.09 tolerated(0.19) unknown(0) TCGA-EJ-5516-01 20 30898587 30898587 G A KIF3B Missense_Mutation p.R336H 0.11 deleterious(0) probably_damaging(0.999) TCGA-EJ-5516-01 20 61471946 61471946 C T COL9A3 Silent p.G639G 0.07 TCGA-EJ-5516-01 21 45194208 45194208 G A CSTB Missense_Mutation p.H58Y 0.15 tolerated(0.14) benign(0.049) TCGA-EJ-5516-01 22 51008809 51008809 G A CPT1B Silent p.S685S 0.06 TCGA-EJ-5516-01 2 160688257 160688257 C T LY75-CD302 Silent p.E1294E 0.03 TCGA-EJ-5516-01 2 86705343 86705343 C T KDM3A Missense_Mutation p.H715Y 0.15 deleterious(0) probably_damaging(0.993) TCGA-EJ-5516-01 3 141161343 141161343 T C ZBTB38 Missense_Mutation p.I38T 0.02 deleterious(0) probably_damaging(0.962) TCGA-EJ-5516-01 3 183602682 183602682 G A PARL 5'UTR 0.18 TCGA-EJ-5516-01 3 403423 403423 G A CHL1 Missense_Mutation p.A450T 0.03 tolerated(0.08) benign(0.212) TCGA-EJ-5516-01 4 158257612 158257612 C T GRIA2 Silent p.L519L 0.16 TCGA-EJ-5516-01 4 9828063 9828063 G A SLC2A9 Silent p.I527I 0.04 TCGA-EJ-5516-01 6 152536125 152536125 G A SYNE1 Missense_Mutation p.P7421L 0.04 probably_damaging(0.993) TCGA-EJ-5516-01 7 127637865 127637865 C A SND1 Intron 0.16 TCGA-EJ-5516-01 7 43548483 43548483 A C HECW1 Intron 0.14 TCGA-EJ-5516-01 8 140630697 140630697 C T KCNK9 Missense_Mutation p.R310H 0.14 tolerated(0.08) benign(0.35) TCGA-EJ-5516-01 8 145135356 145135356 C A EXOSC4 Missense_Mutation p.A197E 0.15 tolerated(0.07) possibly_damaging(0.842) TCGA-EJ-5516-01 X 149671652 149671652 G A MAMLD1 Intron 0.30 TCGA-EJ-5516-01 X 65252421 65252421 T C VSIG4 Missense_Mutation p.T195A 0.08 tolerated(0.26) benign(0.064) TCGA-EJ-5517-01 10 75072385 75072385 C T TTC18 Missense_Mutation p.S380N 0.03 tolerated(0.07) probably_damaging(0.986) TCGA-EJ-5517-01 10 87406775 87406775 G T GRID1 Intron 0.23 TCGA-EJ-5517-01 11 62519844 62519844 G C ZBTB3 Missense_Mutation p.F481L 0.13 deleterious(0) possibly_damaging(0.88) TCGA-EJ-5517-01 11 93471531 93471531 G A TAF1D Missense_Mutation p.S68L 0.34 deleterious(0) probably_damaging(0.921) TCGA-EJ-5517-01 12 113733848 113733848 A T TPCN1 Silent p.P878P 0.37 TCGA-EJ-5517-01 12 26384054 26384054 T C SSPN 3'UTR 0.30 TCGA-EJ-5517-01 12 52864359 52864359 T A KRT6C Missense_Mutation p.K378M 0.08 deleterious(0) probably_damaging(1) TCGA-EJ-5517-01 14 23564591 23564591 G T C14orf119 5'UTR 0.33 TCGA-EJ-5517-01 16 67865092 67865092 G C CENPT Intron 0.10 TCGA-EJ-5517-01 19 46375689 46375689 A T FOXA3 Missense_Mutation p.E142D 0.06 deleterious(0) benign(0.085) TCGA-EJ-5517-01 19 52937267 52937267 G A ZNF534 Silent p.L25L 0.33 TCGA-EJ-5517-01 1 109823645 109823645 C T PSRC1 Missense_Mutation p.V220I 0.37 tolerated(0.21) benign(0.121) TCGA-EJ-5517-01 1 159033322 159033322 T - AIM2 Frame_Shift_Del p.N320Mfs*7 0.35 TCGA-EJ-5517-01 1 186307316 186307316 T - TPR Frame_Shift_Del p.N1404Ifs*3 0.13 TCGA-EJ-5517-01 1 209948722 209948722 T A TRAF3IP3 Missense_Mutation p.V268E 0.23 deleterious(0) benign(0.104) TCGA-EJ-5517-01 1 248367150 248367150 C T OR2M3 Missense_Mutation p.R261W 0.14 deleterious(0.04) benign(0.005) TCGA-EJ-5517-01 1 62614008 62614008 C G INADL Missense_Mutation p.S1775C 0.02 deleterious(0) probably_damaging(0.968) TCGA-EJ-5517-01 2 149526724 149526724 T G EPC2 Missense_Mutation p.L382W 0.12 tolerated(0.18) benign(0.325) TCGA-EJ-5517-01 2 20490511 20490511 T C PUM2 Missense_Mutation p.N398S 0.07 tolerated_low_confidence(0.75) benign(0.106) TCGA-EJ-5517-01 2 242079323 242079323 C G PASK Missense_Mutation p.A193P 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-EJ-5517-01 3 119631633 119631633 T - GSK3B Frame_Shift_Del p.E211Dfs*17 0.17 TCGA-EJ-5517-01 3 41949428 41949428 C A ULK4 Missense_Mutation p.R364L 0.25 tolerated(0.06) possibly_damaging(0.897) TCGA-EJ-5517-01 4 101108776 101108776 G A DDIT4L 3'UTR 0.13 TCGA-EJ-5517-01 4 155242138 155242138 C T DCHS2 Silent p.T1016T 0.08 TCGA-EJ-5517-01 5 140558062 140558062 T A PCDHB8 Silent p.P149P 0.18 TCGA-EJ-5517-01 5 140798265 140798265 C T PCDHGB7 Missense_Mutation p.S280F 0.40 tolerated(0.08) possibly_damaging(0.467) TCGA-EJ-5517-01 6 32018029 32018029 C T TNXB 5'Flank 0.31 TCGA-EJ-5517-01 6 33135619 33135619 C A COL11A2 Missense_Mutation p.G1238V 0.06 unknown(0) TCGA-EJ-5517-01 6 39828787 39828787 G A DAAM2 Silent p.K84K 0.23 TCGA-EJ-5517-01 7 154667655 154667655 C T DPP6 Silent p.F641F 0.15 TCGA-EJ-5517-01 8 139144752 139144752 A T FAM135B 3'UTR 0.07 TCGA-EJ-5517-01 9 139760715 139760715 G A EDF1 5'UTR 0.21 TCGA-EJ-5517-01 X 134166693 134166693 T A FAM127A Missense_Mutation p.Y94N 0.65 deleterious(0) probably_damaging(0.968) TCGA-EJ-5517-01 X 41000651 41000651 G A USP9X Silent p.E376E 0.24 TCGA-EJ-5518-01 10 124813364 124813364 C T ACADSB 3'UTR 0.18 TCGA-EJ-5518-01 10 70940278 70940278 C T SUPV3L1 Silent p.D77D 0.25 TCGA-EJ-5518-01 10 91162072 91162072 C A IFIT1 Missense_Mutation p.L14M 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-5518-01 11 108180931 108180931 T C ATM Missense_Mutation p.L1936S 0.28 deleterious(0) possibly_damaging(0.897) TCGA-EJ-5518-01 11 113704218 113704218 G C USP28 Nonsense_Mutation p.S228* 0.04 TCGA-EJ-5518-01 11 55135714 55135714 A T OR4A15 Missense_Mutation p.T119S 0.03 deleterious_low_confidence(0.03) possibly_damaging(0.46) TCGA-EJ-5518-01 12 108958127 108958127 C A ISCU Missense_Mutation p.L63M 0.23 tolerated_low_confidence(0.24) probably_damaging(0.982) TCGA-EJ-5518-01 12 12870993 12870994 - A CDKN1B Nonsense_Mutation p.Y74* 0.45 TCGA-EJ-5518-01 12 12938592 12938592 C A APOLD1 Intron 0.22 TCGA-EJ-5518-01 12 80750271 80750271 C G OTOGL Missense_Mutation p.P1952R 0.17 tolerated(0.29) benign(0.28) TCGA-EJ-5518-01 13 51826251 51826251 G C FAM124A Missense_Mutation p.V286L 0.26 deleterious(0.02) possibly_damaging(0.834) TCGA-EJ-5518-01 14 23885344 23885344 G A MYH7 Missense_Mutation p.R1608C 0.29 deleterious(0) probably_damaging(0.998) TCGA-EJ-5518-01 14 73743464 73743464 T G NUMB Missense_Mutation p.D593A 0.31 tolerated(0.44) benign(0.001) TCGA-EJ-5518-01 14 89168815 89168815 A G EML5 Missense_Mutation p.L738S 0.13 tolerated(0.18) benign(0.287) TCGA-EJ-5518-01 15 51750826 51750826 T C DMXL2 Splice_Site p.X2672_splice 0.28 TCGA-EJ-5518-01 15 70960502 70960502 T C UACA Missense_Mutation p.I841V 0.19 tolerated(1) benign(0.002) TCGA-EJ-5518-01 15 71305231 71305231 T C LRRC49 Missense_Mutation p.I566T 0.22 tolerated(0.08) benign(0.173) TCGA-EJ-5518-01 16 20548412 20548412 A C ACSM2B 3'UTR 0.39 TCGA-EJ-5518-01 16 83065742 83065742 C T CDH13 Silent p.F142F 0.17 TCGA-EJ-5518-01 17 46804355 46804355 T C HOXB13 Missense_Mutation p.K218E 0.23 deleterious(0) probably_damaging(0.996) TCGA-EJ-5518-01 17 75205504 75205504 C G SEC14L1 Silent p.L519L 0.23 TCGA-EJ-5518-01 19 14938449 14938449 G T OR7A5 Missense_Mutation p.T202K 0.05 deleterious_low_confidence(0) benign(0.315) TCGA-EJ-5518-01 19 22836775 22836775 C T ZNF492 Missense_Mutation p.P30S 0.28 tolerated(0.05) possibly_damaging(0.857) TCGA-EJ-5518-01 19 40383986 40383986 G A FCGBP Silent p.C3208C 0.19 TCGA-EJ-5518-01 1 152191256 152191256 C T HRNR Missense_Mutation p.G950D 0.50 unknown(0) TCGA-EJ-5518-01 1 153410763 153410763 C T S100A7L2 Missense_Mutation p.A26T 0.09 tolerated(0.33) benign(0) TCGA-EJ-5518-01 1 15546032 15546032 C T TMEM51 Silent p.N185N 0.21 TCGA-EJ-5518-01 1 158325960 158325960 G A CD1E Intron 0.26 TCGA-EJ-5518-01 1 240072560 240072560 A G CHRM3 3'UTR 0.38 TCGA-EJ-5518-01 1 243327906 243327906 G T CEP170 Missense_Mutation p.A1119D 0.23 deleterious(0) probably_damaging(0.999) TCGA-EJ-5518-01 1 70502287 70502287 T C LRRC7 Silent p.H718H 0.04 TCGA-EJ-5518-01 2 219691759 219691759 C T PRKAG3 Missense_Mutation p.G354S 0.20 deleterious(0) probably_damaging(1) TCGA-EJ-5518-01 2 241831176 241831176 C T C2orf54 Silent p.S173S 0.26 TCGA-EJ-5518-01 2 25469138 25469138 C T DNMT3A Nonsense_Mutation p.W440* 0.29 TCGA-EJ-5518-01 2 28117448 28117448 C T BRE Nonsense_Mutation p.R9* 0.22 TCGA-EJ-5518-01 2 669565 669565 A T TMEM18 3'UTR 0.30 TCGA-EJ-5518-01 3 187451335 187451335 G A BCL6 Silent p.V49V 0.05 TCGA-EJ-5518-01 3 36778888 36778888 G A DCLK3 Silent p.Y421Y 0.16 TCGA-EJ-5518-01 4 114302736 114302736 C T ANK2 3'UTR 0.20 TCGA-EJ-5518-01 4 85603587 85603587 G A WDFY3 Missense_Mutation p.P3255S 0.20 deleterious(0.04) possibly_damaging(0.724) TCGA-EJ-5518-01 4 94376877 94376877 C T GRID2 Missense_Mutation p.T537M 0.29 deleterious(0) probably_damaging(1) TCGA-EJ-5518-01 5 127855010 127855010 C T FBN2 Missense_Mutation p.R195H 0.05 tolerated(0.19) possibly_damaging(0.522) TCGA-EJ-5518-01 5 77755186 77755186 G - SCAMP1 Splice_Site p.X284_splice 0.27 TCGA-EJ-5518-01 5 80513248 80513248 A C RASGRF2 Missense_Mutation p.N1170H 0.05 deleterious(0) possibly_damaging(0.844) TCGA-EJ-5518-01 7 102574825 102574825 G C LRRC17 Missense_Mutation p.L155F 0.26 deleterious(0) probably_damaging(1) TCGA-EJ-5518-01 7 48315047 48315047 C T ABCA13 Silent p.V1928V 0.26 TCGA-EJ-5518-01 8 128748713 128748713 C T MYC 5'UTR 0.60 TCGA-EJ-5518-01 9 107361471 107361471 G T OR13C5 Missense_Mutation p.T75N 0.21 deleterious(0) benign(0.424) TCGA-EJ-5518-01 9 136324223 136324223 G A ADAMTS13 Missense_Mutation p.R1402Q 0.21 tolerated(0.14) benign(0.124) TCGA-EJ-5518-01 X 13337265 13337265 C T ATXN3L Silent p.S263S 0.51 TCGA-EJ-5519-01 10 14951253 14951253 A - DCLRE1C Frame_Shift_Del p.H412Tfs*7 0.15 TCGA-EJ-5519-01 10 3176719 3176719 C G PFKP Missense_Mutation p.I689M 0.27 tolerated(0.71) benign(0.007) TCGA-EJ-5519-01 11 119228895 119228895 G A USP2 Silent p.F435F 0.31 TCGA-EJ-5519-01 11 18955603 18955603 G T MRGPRX1 Missense_Mutation p.H243Q 0.09 tolerated(0.69) benign(0.004) TCGA-EJ-5519-01 11 46670720 46670720 G A ATG13 Missense_Mutation p.E102K 0.28 tolerated(0.19) probably_damaging(0.933) TCGA-EJ-5519-01 11 5510672 5510672 T G OR52D1 Missense_Mutation p.S246A 0.03 tolerated(0.09) possibly_damaging(0.578) TCGA-EJ-5519-01 11 5537038 5537038 A T UBQLNL Missense_Mutation p.S212T 0.03 tolerated(0.07) benign(0.044) TCGA-EJ-5519-01 11 58920573 58920574 - A FAM111A Frame_Shift_Ins p.Q481Afs*3 0.31 TCGA-EJ-5519-01 11 59856234 59856234 A - MS4A2 5'UTR p.M1? 0.15 TCGA-EJ-5519-01 11 62402415 62402416 - GGAC GANAB Frame_Shift_Ins p.Y147Sfs*14 0.30 TCGA-EJ-5519-01 11 72295684 72295684 G T PDE2A Missense_Mutation p.A483D 0.21 deleterious(0.04) benign(0.137) TCGA-EJ-5519-01 11 78516453 78516453 T A TENM4 Missense_Mutation p.N688I 0.31 tolerated(0.08) benign(0.158) TCGA-EJ-5519-01 12 109898479 109898479 C G KCTD10 Missense_Mutation p.V117L 0.17 tolerated(0.7) benign(0.06) TCGA-EJ-5519-01 12 112153696 112153696 G A ACAD10 Missense_Mutation p.D339N 0.07 tolerated(0.06) possibly_damaging(0.52) TCGA-EJ-5519-01 12 132589578 132589578 A G EP400NL Missense_Mutation p.K206R 0.17 tolerated_low_confidence(0.32) benign(0.045) TCGA-EJ-5519-01 12 32135815 32135815 C T KIAA1551 Silent p.G642G 0.39 TCGA-EJ-5519-01 12 46757763 46757763 C G SLC38A2 Silent p.L299L 0.32 TCGA-EJ-5519-01 12 69094533 69094533 C A NUP107 Silent p.R194R 0.32 TCGA-EJ-5519-01 12 97098576 97098576 T C C12orf55 Splice_Site p.X2176_splice 0.48 TCGA-EJ-5519-01 13 23909862 23909862 G C SACS Missense_Mutation p.A2718G 0.29 benign(0.04) TCGA-EJ-5519-01 13 50123715 50123715 G A RCBTB1 Silent p.Y308Y 0.32 TCGA-EJ-5519-01 13 77664342 77664342 C A MYCBP2 Missense_Mutation p.R3437I 0.35 possibly_damaging(0.831) TCGA-EJ-5519-01 14 24027979 24027979 G A THTPA Missense_Mutation p.R208H 0.19 tolerated(0.29) benign(0.001) TCGA-EJ-5519-01 14 28733803 28733803 A T BNIP3P1 RNA 0.11 TCGA-EJ-5519-01 15 45404868 45404868 T C DUOX2 Missense_Mutation p.Y70C 0.28 deleterious(0) probably_damaging(1) TCGA-EJ-5519-01 15 45404890 45404890 C G DUOX2 Missense_Mutation p.A63P 0.33 tolerated(0.11) probably_damaging(0.999) TCGA-EJ-5519-01 15 52433404 52433404 T C GNB5 Missense_Mutation p.K187R 0.38 tolerated(0.52) probably_damaging(0.998) TCGA-EJ-5519-01 15 52877000 52877000 T G FAM214A Missense_Mutation p.N1007H 0.19 deleterious(0.05) benign(0.111) TCGA-EJ-5519-01 15 65739123 65739123 T C DPP8 3'UTR 0.31 TCGA-EJ-5519-01 16 57243065 57243065 C T RSPRY1 Missense_Mutation p.T161I 0.06 tolerated(0.08) benign(0.075) TCGA-EJ-5519-01 16 66919043 66919043 G A PDP2 Missense_Mutation p.D286N 0.16 deleterious(0) probably_damaging(1) TCGA-EJ-5519-01 16 69056743 69056743 C G TANGO6 Nonsense_Mutation p.S952* 0.20 TCGA-EJ-5519-01 17 17412831 17412831 C T PEMT Silent p.A165A 0.13 TCGA-EJ-5519-01 17 19288435 19288435 G A MFAP4 Missense_Mutation p.A190V 0.45 tolerated(0.06) benign(0.143) TCGA-EJ-5519-01 17 42284563 42284563 G C UBTF 3'UTR 0.36 TCGA-EJ-5519-01 17 5264856 5264856 A G RABEP1 Silent p.Q483Q 0.54 TCGA-EJ-5519-01 17 56598642 56598642 G A SEPT4 Nonsense_Mutation p.R378* 0.12 TCGA-EJ-5519-01 17 57955539 57955539 C T TUBD1 Missense_Mutation p.A232T 0.27 tolerated(0.06) benign(0.406) TCGA-EJ-5519-01 18 12706677 12706677 G T PSMG2 Silent p.A62A 0.48 TCGA-EJ-5519-01 18 18690838 18690839 - AAA ROCK1 In_Frame_Ins p.F11dup 0.34 TCGA-EJ-5519-01 19 14865794 14865794 G A EMR2 Missense_Mutation p.A521V 0.05 deleterious(0) probably_damaging(0.999) TCGA-EJ-5519-01 19 14910838 14910838 G C OR7C1 Silent p.V37V 0.04 TCGA-EJ-5519-01 19 14938095 14938095 C A OR7A5 Nonstop_Mutation p.*320Lext*? 0.31 TCGA-EJ-5519-01 19 17922668 17922668 G C B3GNT3 Missense_Mutation p.A286P 0.22 tolerated(0.15) probably_damaging(0.987) TCGA-EJ-5519-01 19 35981320 35981320 C T KRTDAP Missense_Mutation p.V9M 0.03 deleterious_low_confidence(0) benign(0.154) TCGA-EJ-5519-01 19 38600988 38600988 G A SIPA1L3 Missense_Mutation p.R752Q 0.42 deleterious(0.02) probably_damaging(0.984) TCGA-EJ-5519-01 19 4432096 4432096 G A CHAF1A Missense_Mutation p.D699N 0.17 tolerated(0.47) benign(0.394) TCGA-EJ-5519-01 19 46417454 46417454 T C NANOS2 3'UTR 0.38 TCGA-EJ-5519-01 1 112318709 112318709 G C KCND3 Missense_Mutation p.S653C 0.24 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-EJ-5519-01 1 120479922 120479922 C T NOTCH2 Missense_Mutation p.G1169S 0.11 deleterious(0.02) probably_damaging(0.981) TCGA-EJ-5519-01 1 145441244 145441244 T G TXNIP 3'UTR 0.19 TCGA-EJ-5519-01 1 145580242 145580242 A G PIAS3 Missense_Mutation p.I242V 0.07 tolerated(0.76) possibly_damaging(0.498) TCGA-EJ-5519-01 1 152275293 152275293 A G FLG Silent p.D4023D 0.26 TCGA-EJ-5519-01 1 158057827 158057827 G A KIRREL Missense_Mutation p.A267T 0.05 deleterious(0) probably_damaging(0.997) TCGA-EJ-5519-01 1 159021757 159021757 G A IFI16 Missense_Mutation p.D596N 0.03 tolerated(0.07) benign(0.166) TCGA-EJ-5519-01 1 160783454 160783454 G C LY9 Missense_Mutation p.M161I 0.08 tolerated(0.5) benign(0.03) TCGA-EJ-5519-01 1 179989287 179989287 C G CEP350 Missense_Mutation p.T793S 0.31 benign(0.011) TCGA-EJ-5519-01 1 186055463 186055463 T G HMCN1 Silent p.G2990G 0.19 TCGA-EJ-5519-01 1 206778810 206778810 G A EIF2D Missense_Mutation p.T158M 0.07 tolerated(0.23) possibly_damaging(0.518) TCGA-EJ-5519-01 1 28208523 28208523 G T THEMIS2 Missense_Mutation p.D230Y 0.27 deleterious(0) probably_damaging(0.996) TCGA-EJ-5519-01 1 62456031 62456031 T G INADL Missense_Mutation p.L1288V 0.20 deleterious(0.01) possibly_damaging(0.483) TCGA-EJ-5519-01 1 78098722 78098723 TC - ZZZ3 Frame_Shift_Del p.R106Kfs*14 0.30 TCGA-EJ-5519-01 1 85510885 85510885 G A MCOLN3 Silent p.F53F 0.05 TCGA-EJ-5519-01 20 16360552 16360552 C A KIF16B Nonsense_Mutation p.E699* 0.29 TCGA-EJ-5519-01 20 20013297 20013297 G A NAA20 Missense_Mutation p.D151N 0.11 deleterious(0.04) possibly_damaging(0.54) TCGA-EJ-5519-01 20 43703680 43703680 G A STK4 Missense_Mutation p.D443N 0.06 deleterious(0) benign(0.143) TCGA-EJ-5519-01 20 49509965 49509965 G C ADNP Missense_Mutation p.A429G 0.28 tolerated(0.37) benign(0.001) TCGA-EJ-5519-01 21 45959620 45959620 C T KRTAP10-1 Silent p.Q138Q 0.51 TCGA-EJ-5519-01 22 30736751 30736751 T C SF3A1 Silent p.T374T 0.34 TCGA-EJ-5519-01 22 38336890 38336890 G A MICALL1 3'UTR 0.07 TCGA-EJ-5519-01 2 110301775 110301775 C A SEPT10 3'UTR 0.46 TCGA-EJ-5519-01 2 215278952 215278952 T G VWC2L Missense_Mutation p.L12R 0.07 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EJ-5519-01 2 215645851 215645851 G A BARD1 Silent p.I249I 0.31 TCGA-EJ-5519-01 2 219538385 219538385 C T STK36 Missense_Mutation p.S41L 0.33 deleterious(0.01) benign(0.033) TCGA-EJ-5519-01 2 226447105 226447105 G A NYAP2 Silent p.P324P 0.14 TCGA-EJ-5519-01 2 33745725 33745725 C T RASGRP3 Silent p.H114H 0.36 TCGA-EJ-5519-01 2 44040309 44040309 A T ABCG5 Silent p.L634L 0.29 TCGA-EJ-5519-01 3 180675619 180675620 - A FXR1 Frame_Shift_Ins p.N300Kfs*20 0.28 TCGA-EJ-5519-01 3 186302301 186302301 A G DNAJB11 Missense_Mutation p.N312S 0.37 tolerated(0.21) possibly_damaging(0.501) TCGA-EJ-5519-01 3 26751543 26751543 G C LRRC3B Missense_Mutation p.S127T 0.36 tolerated(0.33) benign(0.007) TCGA-EJ-5519-01 3 39226607 39226607 G T XIRP1 Missense_Mutation p.P1444T 0.23 tolerated_low_confidence(0.22) benign(0.005) TCGA-EJ-5519-01 3 44399287 44399287 G C TCAIM Silent p.S28S 0.33 TCGA-EJ-5519-01 4 76813115 76813115 G A PPEF2 Silent p.A24A 0.22 TCGA-EJ-5519-01 5 140255276 140255276 C A PCDHA12 Missense_Mutation p.D73E 0.31 tolerated_low_confidence(0.07) benign(0.067) TCGA-EJ-5519-01 5 42718930 42718930 C A GHR Missense_Mutation p.P441T 0.04 tolerated(0.23) possibly_damaging(0.497) TCGA-EJ-5519-01 6 110752470 110752470 C T SLC22A16 Silent p.S475S 0.50 TCGA-EJ-5519-01 6 122768119 122768122 ATTA TTT SERINC1 Frame_Shift_Del p.N342Kfs*3 0.19 TCGA-EJ-5519-01 6 132695782 132695782 G T MOXD1 Missense_Mutation p.D133E 0.29 deleterious(0) probably_damaging(0.965) TCGA-EJ-5519-01 6 150048281 150048281 G A NUP43 Missense_Mutation p.H323Y 0.10 tolerated(0.11) benign(0) TCGA-EJ-5519-01 6 152647137 152647137 T A SYNE1 Missense_Mutation p.T5132S 0.37 benign(0.031) TCGA-EJ-5519-01 6 34100899 34100899 C T GRM4 Silent p.A125A 0.44 TCGA-EJ-5519-01 7 105190573 105190573 G C RINT1 Missense_Mutation p.Q356H 0.06 deleterious(0) probably_damaging(0.999) TCGA-EJ-5519-01 7 154667617 154667617 G A DPP6 Missense_Mutation p.D629N 0.28 deleterious(0.04) benign(0.334) TCGA-EJ-5519-01 7 48318294 48318294 T C ABCA13 Silent p.T2501T 0.07 TCGA-EJ-5519-01 7 93633528 93633528 T A BET1 Translation_Start_Site p.M1? 0.32 deleterious(0) possibly_damaging(0.813) TCGA-EJ-5519-01 7 94293408 94293408 T C PEG10 Silent p.S180S 0.09 TCGA-EJ-5519-01 8 105361522 105361522 A G DCSTAMP Missense_Mutation p.T248A 0.06 deleterious(0) possibly_damaging(0.9) TCGA-EJ-5519-01 8 110293385 110293385 C G NUDCD1 Missense_Mutation p.W280C 0.06 deleterious(0) probably_damaging(1) TCGA-EJ-5519-01 8 131249205 131249205 C G ASAP1 Silent p.V74V 0.22 TCGA-EJ-5519-01 8 145746456 145746456 T G LRRC14 Missense_Mutation p.L359R 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EJ-5519-01 8 17169089 17169089 C T MTMR7 Silent p.R344R 0.14 TCGA-EJ-5519-01 8 25745379 25745379 C A EBF2 Silent p.G287G 0.34 TCGA-EJ-5519-01 8 95158181 95158181 G A CDH17 Silent p.N714N 0.25 TCGA-EJ-5519-01 8 95676990 95676990 C G ESRP1 Nonsense_Mutation p.S237* 0.25 TCGA-EJ-5519-01 9 125239347 125239347 G T OR1J1 Missense_Mutation p.P287T 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EJ-5519-01 9 35711265 35711265 C A TLN1 Missense_Mutation p.A1336S 0.08 tolerated(0.45) probably_damaging(0.992) TCGA-EJ-5519-01 9 84534462 84534462 G - SPATA31D5P RNA 0.13 TCGA-EJ-5519-01 X 108718895 108718895 G C GUCY2F Missense_Mutation p.L91V 0.69 tolerated(0.42) benign(0.055) TCGA-EJ-5521-01 10 134942117 134942117 C T GPR123 Missense_Mutation p.T262M 0.26 deleterious(0) probably_damaging(0.999) TCGA-EJ-5521-01 11 116729309 116729309 T C SIK3 Missense_Mutation p.T852A 0.26 tolerated_low_confidence(0.9) benign(0.001) TCGA-EJ-5521-01 11 116767026 116767026 T C SIK3 Missense_Mutation p.N212D 0.05 tolerated(0.06) benign(0.328) TCGA-EJ-5521-01 11 4791052 4791052 A T OR51F1 Silent p.P32P 0.20 TCGA-EJ-5521-01 12 20890188 20890188 C A SLCO1C1 Missense_Mutation p.N510K 0.11 tolerated(0.12) benign(0.002) TCGA-EJ-5521-01 12 55420976 55420976 C A NEUROD4 Silent p.G251G 0.12 TCGA-EJ-5521-01 12 7061281 7061281 C T PTPN6 Silent p.R89R 0.08 TCGA-EJ-5521-01 13 102047576 102047576 C T NALCN Silent p.T83T 0.15 TCGA-EJ-5521-01 14 105413230 105413230 T G AHNAK2 Missense_Mutation p.Q2853P 0.08 benign(0.161) TCGA-EJ-5521-01 15 42681231 42681231 T G CAPN3 Missense_Mutation p.S246R 0.08 tolerated(0.85) benign(0.001) TCGA-EJ-5521-01 15 48580269 48580269 C T SLC12A1 Missense_Mutation p.H887Y 0.23 tolerated(0.3) probably_damaging(0.913) TCGA-EJ-5521-01 15 69708370 69708370 G A KIF23 Missense_Mutation p.G17R 0.06 tolerated(0.33) benign(0.004) TCGA-EJ-5521-01 17 53007460 53007460 G T TOM1L1 Missense_Mutation p.M249I 0.20 deleterious(0.01) possibly_damaging(0.58) TCGA-EJ-5521-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.19 deleterious(0) probably_damaging(1) TCGA-EJ-5521-01 18 5397388 5397388 G A EPB41L3 Missense_Mutation p.T837M 0.07 tolerated_low_confidence(0.34) benign(0.004) TCGA-EJ-5521-01 18 65179121 65179121 A G DSEL Missense_Mutation p.S919P 0.03 tolerated(0.17) possibly_damaging(0.452) TCGA-EJ-5521-01 19 10394818 10394818 G A ICAM1 Silent p.Q249Q 0.07 TCGA-EJ-5521-01 19 10625418 10625418 G A S1PR5 Silent p.A90A 0.43 TCGA-EJ-5521-01 19 31770341 31770341 C T TSHZ3 Missense_Mutation p.A120T 0.05 deleterious(0.02) possibly_damaging(0.808) TCGA-EJ-5521-01 19 5784048 5784048 T C PRR22 Silent p.P70P 0.07 TCGA-EJ-5521-01 1 111147494 111147494 C T KCNA2 5'UTR 0.21 TCGA-EJ-5521-01 1 114483187 114483187 A G HIPK1 Missense_Mutation p.Q61R 0.06 tolerated(0.27) benign(0.247) TCGA-EJ-5521-01 1 158064571 158064571 C T KIRREL Silent p.S645S 0.12 TCGA-EJ-5521-01 1 158577155 158577155 G T OR10Z1 Missense_Mutation p.L309F 0.04 tolerated(0.34) benign(0.002) TCGA-EJ-5521-01 1 190129810 190129810 A G BRINP3 Missense_Mutation p.L391P 0.08 deleterious(0) possibly_damaging(0.819) TCGA-EJ-5521-01 1 248637353 248637353 T A OR2T3 Missense_Mutation p.N234K 0.07 tolerated(0.44) benign(0.007) TCGA-EJ-5521-01 1 25688951 25688951 T C RHCE 3'UTR 0.13 TCGA-EJ-5521-01 20 17622555 17622555 T A RRBP1 Nonsense_Mutation p.K258* 0.05 TCGA-EJ-5521-01 20 33122618 33122618 C - DYNLRB1 Intron 0.14 TCGA-EJ-5521-01 20 42161556 42161556 T C L3MBTL1 Silent p.Y454Y 0.08 TCGA-EJ-5521-01 21 22658654 22658655 - T NCAM2 Frame_Shift_Ins p.C136Lfs*4 0.21 TCGA-EJ-5521-01 21 41465774 41465774 C T DSCAM Missense_Mutation p.D1242N 0.40 deleterious(0.04) probably_damaging(0.979) TCGA-EJ-5521-01 22 31663865 31663865 G C LIMK2 Missense_Mutation p.G390A 0.05 deleterious(0) probably_damaging(0.998) TCGA-EJ-5521-01 22 32346379 32346379 C T YWHAH Intron 0.20 TCGA-EJ-5521-01 2 101607290 101607290 C T NPAS2 Silent p.D689D 0.15 TCGA-EJ-5521-01 2 114501368 114501368 C T SLC35F5 Missense_Mutation p.E162K 0.26 tolerated(0.05) benign(0.41) TCGA-EJ-5521-01 2 15378658 15378658 C T NBAS Silent p.E1959E 0.08 TCGA-EJ-5521-01 2 179580256 179580256 C T TTN Missense_Mutation p.G8629S 0.12 TCGA-EJ-5521-01 2 233394757 233394757 G A CHRND Missense_Mutation p.R243H 0.25 deleterious(0) probably_damaging(0.96) TCGA-EJ-5521-01 3 135801246 135801246 C T PPP2R3A Missense_Mutation p.S924F 0.07 tolerated(0.09) probably_damaging(0.998) TCGA-EJ-5521-01 3 148760005 148760005 A T HLTF Silent p.I715I 0.27 TCGA-EJ-5521-01 3 176768285 176768286 - A TBL1XR1 Frame_Shift_Ins p.S181* 0.24 TCGA-EJ-5521-01 3 38991766 38991766 G A SCN11A Missense_Mutation p.R30W 0.04 deleterious(0) probably_damaging(0.939) TCGA-EJ-5521-01 3 46542309 46542309 A G RTP3 Missense_Mutation p.I207V 0.17 tolerated(0.75) benign(0) TCGA-EJ-5521-01 3 58490904 58490904 A G ACOX2 3'UTR 0.05 TCGA-EJ-5521-01 4 126371768 126371768 T C FAT4 Silent p.Y3199Y 0.06 TCGA-EJ-5521-01 4 159790453 159790453 C T FNIP2 Nonsense_Mutation p.R889* 0.10 TCGA-EJ-5521-01 4 177083293 177083293 G A WDR17 Missense_Mutation p.A964T 0.22 deleterious(0) probably_damaging(0.996) TCGA-EJ-5521-01 5 156899410 156899410 C T NIPAL4 Silent p.Y281Y 0.08 TCGA-EJ-5521-01 5 173317315 173317316 - G CPEB4 Frame_Shift_Ins p.V195Gfs*7 0.11 TCGA-EJ-5521-01 5 180582179 180582179 G A OR2V2 Silent p.V79V 0.05 TCGA-EJ-5521-01 5 71516691 71516691 T C MRPS27 3'UTR 0.20 TCGA-EJ-5521-01 5 72370579 72370579 G T FCHO2 Silent p.R530R 0.07 TCGA-EJ-5521-01 5 78427020 78427020 C T BHMT 3'UTR 0.12 TCGA-EJ-5521-01 6 110547378 110547378 C T CDC40 Missense_Mutation p.P450L 0.21 deleterious(0) probably_damaging(0.972) TCGA-EJ-5521-01 6 35389697 35389697 G A PPARD Missense_Mutation p.R129H 0.15 deleterious(0) probably_damaging(0.984) TCGA-EJ-5521-01 7 140158897 140158897 G - MKRN1 Frame_Shift_Del p.C228Vfs*101 0.08 TCGA-EJ-5521-01 7 15458194 15458194 T C AGMO Missense_Mutation p.I200V 0.32 deleterious(0) possibly_damaging(0.874) TCGA-EJ-5521-01 7 65751577 65751577 G A TPST1 Missense_Mutation p.D309N 0.07 tolerated(0.06) benign(0.243) TCGA-EJ-5521-01 7 77567152 77567152 C T PHTF2 Silent p.N454N 0.10 TCGA-EJ-5521-01 9 108424812 108424812 G C TAL2 Missense_Mutation p.R12P 0.16 deleterious(0) probably_damaging(0.999) TCGA-EJ-5521-01 9 130653032 130653032 G A ST6GALNAC6 Silent p.L196L 0.09 TCGA-EJ-5521-01 9 5798848 5798848 A C ERMP1 Missense_Mutation p.L743R 0.06 tolerated(0.07) possibly_damaging(0.616) TCGA-EJ-5521-01 9 71628979 71628979 G A PRKACG Silent p.T10T 0.10 TCGA-EJ-5521-01 X 154528413 154528413 G C CLIC2 Missense_Mutation p.R35G 0.15 deleterious(0) probably_damaging(1) TCGA-EJ-5521-01 X 56591153 56591153 G A UBQLN2 Missense_Mutation p.A283T 0.07 tolerated(0.07) possibly_damaging(0.591) TCGA-EJ-5522-01 10 11330491 11330491 G A CELF2 Missense_Mutation p.A318T 0.21 tolerated(0.23) benign(0.102) TCGA-EJ-5522-01 11 56128312 56128312 C T OR8J1 Missense_Mutation p.T197I 0.26 tolerated(0.27) benign(0.098) TCGA-EJ-5522-01 11 64109490 64109490 C A CCDC88B Silent p.R234R 0.06 TCGA-EJ-5522-01 12 101764854 101764854 C T UTP20 Silent p.L2236L 0.20 TCGA-EJ-5522-01 14 103599852 103599852 C A TNFAIP2 Missense_Mutation p.H567N 0.05 tolerated(1) benign(0.002) TCGA-EJ-5522-01 15 49329843 49329843 T A SECISBP2L Missense_Mutation p.I50F 0.29 deleterious(0) possibly_damaging(0.891) TCGA-EJ-5522-01 16 76592650 76592650 C T CNTNAP4 3'Flank 0.55 TCGA-EJ-5522-01 17 18416592 18416592 G A CTD-2303H24.2 RNA 0.17 TCGA-EJ-5522-01 17 18874710 18874710 G A FAM83G Missense_Mutation p.R812W 0.19 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-EJ-5522-01 17 56345181 56345181 C T LPO Silent p.N655N 0.17 TCGA-EJ-5522-01 19 13211896 13211896 T G LYL1 Silent p.P30P 0.25 TCGA-EJ-5522-01 19 8564163 8564163 C T PRAM1 Missense_Mutation p.A177T 0.18 tolerated(0.42) benign(0.022) TCGA-EJ-5522-01 1 1333666 1333666 G A CCNL2 Silent p.R140R 0.21 TCGA-EJ-5522-01 1 16918514 16918514 C A NBPF1 Translation_Start_Site p.M1? 0.04 deleterious(0) benign(0.043) TCGA-EJ-5522-01 1 2116261 2116261 G C C1orf86 3'Flank 0.23 TCGA-EJ-5522-01 22 25144942 25144942 C A PIWIL3 Missense_Mutation p.D461Y 0.24 deleterious(0) probably_damaging(0.972) TCGA-EJ-5522-01 22 26830386 26830386 G A ASPHD2 Missense_Mutation p.A269T 0.19 deleterious(0) probably_damaging(0.999) TCGA-EJ-5522-01 2 164467945 164467945 C T FIGN Missense_Mutation p.A133T 0.26 tolerated(0.2) benign(0.064) TCGA-EJ-5522-01 2 242138766 242138766 C T ANO7 Silent p.Y169Y 0.18 TCGA-EJ-5522-01 3 142525039 142525039 C T TRPC1 Missense_Mutation p.R782W 0.13 deleterious(0) probably_damaging(0.992) TCGA-EJ-5522-01 3 77147227 77147227 G A ROBO2 Missense_Mutation p.V58I 0.24 deleterious(0) unknown(0) TCGA-EJ-5522-01 4 48851971 48851971 T C OCIAD1 Silent p.C83C 0.22 TCGA-EJ-5522-01 5 140725403 140725403 C T PCDHGA3 Silent p.N601N 0.19 TCGA-EJ-5522-01 5 140735373 140735373 C T PCDHGA4 Silent p.R202R 0.20 TCGA-EJ-5522-01 5 143586927 143586927 G A KCTD16 Missense_Mutation p.R217Q 0.05 deleterious(0) probably_damaging(0.994) TCGA-EJ-5522-01 6 101166013 101166013 C A ASCC3 Missense_Mutation p.D673Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-EJ-5522-01 6 31975532 31975532 C T AL645922.1 5'Flank 0.20 TCGA-EJ-5522-01 6 32008267 32008267 C T CYP21A2 Missense_Mutation p.R342W 0.15 deleterious(0) probably_damaging(0.993) TCGA-EJ-5522-01 8 1497834 1497834 G A DLGAP2 Silent p.P325P 0.50 TCGA-EJ-5522-01 8 2910129 2910129 T A CSMD1 Silent p.S2505S 0.19 TCGA-EJ-5522-01 8 30407063 30407063 C A RBPMS 3'Flank 0.19 TCGA-EJ-5522-01 8 41572581 41572581 G A ANK1 Silent p.T571T 0.20 TCGA-EJ-5522-01 8 68334629 68334629 A G CPA6 3'UTR 0.22 TCGA-EJ-5524-01 11 123756180 123756180 C A TMEM225 5'UTR 0.21 TCGA-EJ-5524-01 11 65339161 65339161 G A SSSCA1 Missense_Mutation p.A186T 0.06 tolerated(0.36) benign(0.15) TCGA-EJ-5524-01 11 85968564 85968564 T G EED Missense_Mutation p.V187G 0.04 tolerated(0.11) benign(0.117) TCGA-EJ-5524-01 12 124395093 124395093 G A DNAH10 Silent p.K3218K 0.05 TCGA-EJ-5524-01 12 25148935 25148935 C T C12orf77 Silent p.T71T 0.34 TCGA-EJ-5524-01 12 32975445 32975445 T C PKP2 Missense_Mutation p.K643E 0.09 tolerated(0.16) benign(0.099) TCGA-EJ-5524-01 14 104552115 104552115 G A ASPG Missense_Mutation p.R3H 0.50 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-EJ-5524-01 14 51223295 51223295 C T NIN Missense_Mutation p.G1485R 0.06 tolerated(0.1) probably_damaging(0.954) TCGA-EJ-5524-01 15 32920998 32921007 GAATTGGTAG - ARHGAP11A Splice_Site p.X311_splice 0.14 TCGA-EJ-5524-01 15 41860444 41860444 G A TYRO3 Missense_Mutation p.A331T 0.18 tolerated(0.22) benign(0.013) TCGA-EJ-5524-01 15 67477178 67477178 G T SMAD3 Missense_Mutation p.A329S 0.12 tolerated(0.21) possibly_damaging(0.884) TCGA-EJ-5524-01 15 93524064 93524064 G C CHD2 Missense_Mutation p.E966Q 0.10 tolerated(0.13) benign(0.278) TCGA-EJ-5524-01 17 38792754 38792754 T C SMARCE1 Missense_Mutation p.N88D 0.27 deleterious(0.01) possibly_damaging(0.621) TCGA-EJ-5524-01 17 42085837 42085837 C T NAGS Silent p.G491G 0.08 TCGA-EJ-5524-01 17 61864525 61864525 T C DDX42 Missense_Mutation p.F39S 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.543) TCGA-EJ-5524-01 17 73627745 73627745 G A RECQL5 Silent p.C411C 0.07 TCGA-EJ-5524-01 18 54591238 54591238 G A WDR7 Silent p.L1204L 0.08 TCGA-EJ-5524-01 19 22940066 22940066 A - ZNF99 3'Flank 0.13 TCGA-EJ-5524-01 19 52249334 52249334 C A FPR1 Missense_Mutation p.G305V 0.21 deleterious(0) probably_damaging(0.947) TCGA-EJ-5524-01 19 9056757 9056757 G T MUC16 Missense_Mutation p.P10230H 0.09 benign(0.027) TCGA-EJ-5524-01 1 120302609 120302609 C T HMGCS2 Missense_Mutation p.R188H 0.25 deleterious(0.01) benign(0.058) TCGA-EJ-5524-01 1 151105861 151105861 C T SEMA6C Missense_Mutation p.R663H 0.10 tolerated(0.55) possibly_damaging(0.715) TCGA-EJ-5524-01 1 17949669 17949669 C T ARHGEF10L Missense_Mutation p.S400L 0.32 deleterious(0) possibly_damaging(0.854) TCGA-EJ-5524-01 1 185880818 185880818 A C HMCN1 Missense_Mutation p.K269T 0.05 probably_damaging(0.932) TCGA-EJ-5524-01 1 3807511 3807511 G A C1orf174 Silent p.S80S 0.32 TCGA-EJ-5524-01 1 86916415 86916415 C T CLCA2 Silent p.N718N 0.13 TCGA-EJ-5524-01 21 42762561 42762561 G A MX2 Missense_Mutation p.V268M 0.48 deleterious(0.02) probably_damaging(1) TCGA-EJ-5524-01 2 125660643 125660643 T A CNTNAP5 Missense_Mutation p.D1206E 0.48 tolerated(0.13) benign(0.007) TCGA-EJ-5524-01 2 176981982 176981982 G A HOXD10 Missense_Mutation p.V141I 0.09 tolerated(0.3) benign(0.002) TCGA-EJ-5524-01 2 211421556 211421556 A G CPS1 Silent p.R39R 0.05 TCGA-EJ-5524-01 2 215914419 215914419 G T ABCA12 Missense_Mutation p.N208K 0.20 tolerated(0.53) benign(0.021) TCGA-EJ-5524-01 2 72359460 72359460 C T CYP26B1 Missense_Mutation p.V479I 0.10 tolerated(0.88) benign(0.023) TCGA-EJ-5524-01 3 121303769 121303769 C T ARGFX Missense_Mutation p.R76W 0.26 tolerated(0.09) benign(0.001) TCGA-EJ-5524-01 4 3138037 3138037 G A HTT Missense_Mutation p.A928T 0.04 possibly_damaging(0.76) TCGA-EJ-5524-01 4 85719250 85719250 C T WDFY3 Missense_Mutation p.R945H 0.29 deleterious(0) benign(0.222) TCGA-EJ-5524-01 5 19483619 19483619 C T CDH18 Missense_Mutation p.R558Q 0.20 tolerated(0.23) benign(0.035) TCGA-EJ-5524-01 6 31477560 31477560 G T MICB Missense_Mutation p.E342D 0.17 tolerated(0.21) probably_damaging(0.979) TCGA-EJ-5524-01 6 35444194 35444194 G A TEAD3 Missense_Mutation p.P204L 0.07 deleterious(0.02) benign(0.031) TCGA-EJ-5524-01 6 54735357 54735357 G A FAM83B Missense_Mutation p.D105N 0.34 deleterious(0) probably_damaging(0.981) TCGA-EJ-5524-01 6 56035897 56035897 C A COL21A1 Missense_Mutation p.A224S 0.25 tolerated(0.11) benign(0.096) TCGA-EJ-5524-01 7 151845693 151845693 T C KMT2C Missense_Mutation p.Y4440C 0.26 probably_damaging(1) TCGA-EJ-5524-01 7 2698620 2698620 C G TTYH3 Missense_Mutation p.L491V 0.08 deleterious(0) probably_damaging(0.913) TCGA-EJ-5524-01 8 22058722 22058722 G T BMP1 Intron 0.22 TCGA-EJ-5524-01 8 38705654 38705654 A T TACC1 3'UTR 0.15 TCGA-EJ-5524-01 9 124752018 124752018 C A TTLL11 Missense_Mutation p.W332L 0.22 tolerated(0.06) benign(0.039) TCGA-EJ-5524-01 9 35662634 35662634 G T ARHGEF39 Missense_Mutation p.P260T 0.44 deleterious(0.02) possibly_damaging(0.697) TCGA-EJ-5524-01 9 35662635 35662635 C T ARHGEF39 Silent p.K259K 0.43 TCGA-EJ-5524-01 9 94486051 94486051 C T ROR2 Missense_Mutation p.V909M 0.17 tolerated_low_confidence(0.06) possibly_damaging(0.66) TCGA-EJ-5524-01 X 135431329 135431329 C A GPR112 Missense_Mutation p.P1822T 0.09 tolerated(0.1) benign(0.009) TCGA-EJ-5525-01 10 118897601 118897601 A T VAX1 5'Flank 0.38 TCGA-EJ-5525-01 10 134942935 134942935 T C GPR123 Silent p.L535L 0.46 TCGA-EJ-5525-01 10 15254774 15254774 G A FAM171A1 3'UTR 0.07 TCGA-EJ-5525-01 10 18629833 18629833 G T CACNB2 Intron 0.38 TCGA-EJ-5525-01 10 27497258 27497258 C A ACBD5 Missense_Mutation p.A441S 0.41 deleterious(0.01) probably_damaging(1) TCGA-EJ-5525-01 10 50854677 50854677 A T CHAT Missense_Mutation p.Y413F 0.38 tolerated(0.52) benign(0) TCGA-EJ-5525-01 11 18362866 18362866 A G GTF2H1 Silent p.T222T 0.34 TCGA-EJ-5525-01 11 47738903 47738903 T A FNBP4 3'UTR 0.44 TCGA-EJ-5525-01 11 57958582 57958582 T G OR9Q2 Missense_Mutation p.M207R 0.37 tolerated(0.17) possibly_damaging(0.74) TCGA-EJ-5525-01 11 66029325 66029325 C T KLC2 Missense_Mutation p.A114V 0.05 deleterious(0) possibly_damaging(0.908) TCGA-EJ-5525-01 12 100536424 100536424 C A UHRF1BP1L 5'UTR 0.39 TCGA-EJ-5525-01 12 109849777 109849777 G A MYO1H Missense_Mutation p.A481T 0.57 deleterious(0.02) possibly_damaging(0.828) TCGA-EJ-5525-01 12 130839528 130839528 C T PIWIL1 Nonsense_Mutation p.R423* 0.39 TCGA-EJ-5525-01 12 27109591 27109591 A G FGFR1OP2 Missense_Mutation p.K84R 0.35 tolerated(0.82) benign(0.009) TCGA-EJ-5525-01 12 52310003 52310003 G A ACVRL1 Missense_Mutation p.R411Q 0.42 deleterious(0) probably_damaging(1) TCGA-EJ-5525-01 12 57864730 57864730 A T GLI1 Missense_Mutation p.E736V 0.33 tolerated(0.06) benign(0.158) TCGA-EJ-5525-01 13 113824784 113824784 A C PROZ Missense_Mutation p.N233H 0.07 deleterious(0.01) probably_damaging(0.944) TCGA-EJ-5525-01 13 26788080 26788080 G A RNF6 Nonsense_Mutation p.Q647* 0.67 TCGA-EJ-5525-01 13 77718680 77718680 C T MYCBP2 Missense_Mutation p.M2363I 0.13 possibly_damaging(0.746) TCGA-EJ-5525-01 14 94004551 94004551 G T UNC79 Nonsense_Mutation p.E270* 0.51 TCGA-EJ-5525-01 15 31294406 31294406 G A TRPM1 Silent p.I1516I 0.03 TCGA-EJ-5525-01 15 52571856 52571856 C G MYO5C Missense_Mutation p.V52L 0.48 tolerated(0.49) benign(0.003) TCGA-EJ-5525-01 15 72039268 72039268 C A THSD4 Missense_Mutation p.R710S 0.05 tolerated(0.05) possibly_damaging(0.731) TCGA-EJ-5525-01 16 15198418 15198418 A T RP11-1186N24.5 3'Flank 0.43 TCGA-EJ-5525-01 17 30349140 30349140 A C LRRC37B Silent p.T325T 0.40 TCGA-EJ-5525-01 17 38905556 38905556 G C KRT25 Nonsense_Mutation p.Y399* 0.04 TCGA-EJ-5525-01 17 62050100 62050100 C G SCN4A Missense_Mutation p.E34D 0.37 tolerated(0.05) benign(0.046) TCGA-EJ-5525-01 17 74732433 74732456 GACCGAGATCGAGAACGAGTGCGG - SRSF2 In_Frame_Del p.R152_S159del 0.10 TCGA-EJ-5525-01 17 7578242 7578242 C - TP53 Frame_Shift_Del p.V203Wfs*44 0.44 TCGA-EJ-5525-01 18 48604690 48604690 T A SMAD4 Missense_Mutation p.S504R 0.09 deleterious(0) probably_damaging(0.989) TCGA-EJ-5525-01 19 1058148 1058148 C T ABCA7 Silent p.L1677L 0.74 TCGA-EJ-5525-01 19 17836873 17836873 T A MAP1S Missense_Mutation p.L227Q 0.56 deleterious(0) probably_damaging(0.999) TCGA-EJ-5525-01 19 40788504 40788504 A C AKT2 Intron 0.36 TCGA-EJ-5525-01 19 44099377 44099377 G A IRGQ Silent p.P38P 0.30 TCGA-EJ-5525-01 19 54848198 54848198 G A LILRA4 Missense_Mutation p.A390V 0.40 deleterious(0.04) benign(0.053) TCGA-EJ-5525-01 19 58101497 58101497 C T ZIK1 Silent p.V106V 0.37 TCGA-EJ-5525-01 1 120342381 120342381 C T REG4 Silent p.Q90Q 0.05 TCGA-EJ-5525-01 1 144856960 144856961 - TTT PDE4DIP In_Frame_Ins p.K2175dup 0.15 TCGA-EJ-5525-01 1 153274900 153274900 C A PGLYRP3 Missense_Mutation p.C238F 0.17 deleterious(0) probably_damaging(1) TCGA-EJ-5525-01 1 153963249 153963249 G T RPS27 5'UTR 0.23 TCGA-EJ-5525-01 1 205817085 205817085 G T PM20D1 Missense_Mutation p.P62T 0.40 deleterious(0.01) possibly_damaging(0.889) TCGA-EJ-5525-01 1 227153070 227153070 C T ADCK3 Nonsense_Mutation p.Q183* 0.89 TCGA-EJ-5525-01 1 235490233 235490233 A C ARID4B Translation_Start_Site p.M1? 0.82 deleterious(0) benign(0.188) TCGA-EJ-5525-01 1 68947728 68947728 C A DEPDC1 Splice_Site p.X588_splice 0.44 TCGA-EJ-5525-01 1 92185486 92185486 C T TGFBR3 Silent p.E459E 0.03 TCGA-EJ-5525-01 20 33575571 33575571 G T MYH7B Missense_Mutation p.V466L 0.04 benign(0.006) TCGA-EJ-5525-01 21 35195922 35195922 T - ITSN1 Frame_Shift_Del p.F1050Sfs*6 0.32 TCGA-EJ-5525-01 21 45503102 45503102 T C TRAPPC10 Silent p.A719A 0.23 TCGA-EJ-5525-01 22 50987420 50987420 G C KLHDC7B Silent p.R275R 0.36 TCGA-EJ-5525-01 2 128262862 128262862 G A IWS1 Missense_Mutation p.P206L 0.29 tolerated_low_confidence(0.44) benign(0.133) TCGA-EJ-5525-01 2 179358603 179358618 CTGAAAACCAAAATGT - PLEKHA3 Frame_Shift_Del p.K114Nfs*9 0.47 TCGA-EJ-5525-01 2 218925510 218925510 G A CXCR2P1 RNA 0.59 TCGA-EJ-5525-01 2 237489879 237489879 C T ACKR3 Silent p.Y257Y 0.59 TCGA-EJ-5525-01 2 241658536 241658536 G A KIF1A Missense_Mutation p.R1701W 0.21 deleterious(0) probably_damaging(1) TCGA-EJ-5525-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.48 deleterious(0.04) probably_damaging(0.96) TCGA-EJ-5525-01 3 24001168 24001168 T - NR1D2 Frame_Shift_Del p.R128Gfs*14 0.33 TCGA-EJ-5525-01 3 41266097 41266097 G C CTNNB1 Missense_Mutation p.D32H 0.38 deleterious(0) probably_damaging(0.988) TCGA-EJ-5525-01 3 48677786 48677786 G A CELSR3 Missense_Mutation p.R3078W 0.38 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-EJ-5525-01 4 100534280 100534280 C A MTTP Missense_Mutation p.L734I 0.53 deleterious(0) probably_damaging(0.977) TCGA-EJ-5525-01 4 104511030 104511030 C T TACR3 Missense_Mutation p.V403M 0.41 deleterious(0.02) possibly_damaging(0.496) TCGA-EJ-5525-01 4 114186063 114186063 C T ANK2 Missense_Mutation p.T466M 0.38 probably_damaging(0.999) TCGA-EJ-5525-01 4 185012266 185012266 T G ENPP6 3'UTR 0.44 TCGA-EJ-5525-01 4 76861916 76861916 C G NAAA Missense_Mutation p.A63P 0.21 tolerated(0.06) benign(0.11) TCGA-EJ-5525-01 5 88027676 88027676 A G MEF2C Missense_Mutation p.V245A 0.38 tolerated(0.61) possibly_damaging(0.9) TCGA-EJ-5525-01 6 106969054 106969054 T A AIM1 Nonsense_Mutation p.L916* 0.06 TCGA-EJ-5525-01 6 117824981 117824981 C G DCBLD1 Missense_Mutation p.S55C 0.39 deleterious(0) possibly_damaging(0.843) TCGA-EJ-5525-01 6 132195477 132195477 A G ENPP1 Silent p.Q545Q 0.04 TCGA-EJ-5525-01 6 133849973 133849973 T A EYA4 3'UTR 0.36 TCGA-EJ-5525-01 7 24874112 24874112 T C OSBPL3 Missense_Mutation p.E580G 0.37 deleterious(0.04) possibly_damaging(0.685) TCGA-EJ-5525-01 8 10388864 10388864 T C PRSS55 Missense_Mutation p.I136T 0.72 tolerated(0.42) benign(0.125) TCGA-EJ-5525-01 8 10464916 10464916 G A RP1L1 Missense_Mutation p.P2231L 0.71 unknown(0) TCGA-EJ-5525-01 8 136554944 136554944 G T KHDRBS3 Missense_Mutation p.K85N 0.19 deleterious(0) probably_damaging(0.959) TCGA-EJ-5525-01 8 136554945 136554945 C T KHDRBS3 Missense_Mutation p.R86C 0.19 deleterious(0) probably_damaging(0.994) TCGA-EJ-5525-01 8 146033227 146033227 G A ZNF517 Missense_Mutation p.R309H 0.05 deleterious(0.01) possibly_damaging(0.833) TCGA-EJ-5525-01 8 24775968 24775968 A T NEFM Missense_Mutation p.D867V 0.80 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EJ-5525-01 8 65537016 65537016 C A CYP7B1 Missense_Mutation p.R68M 0.18 deleterious(0.04) possibly_damaging(0.643) TCGA-EJ-5525-01 8 95895044 95895044 T G CCNE2 Missense_Mutation p.H303P 0.19 deleterious(0) probably_damaging(0.994) TCGA-EJ-5525-01 8 9605603 9605603 A T TNKS Missense_Mutation p.T905S 0.62 deleterious(0.03) probably_damaging(0.989) TCGA-EJ-5525-01 9 100991289 100991289 A C TBC1D2 Missense_Mutation p.V308G 0.37 deleterious(0.02) benign(0.044) TCGA-EJ-5525-01 9 117068939 117068939 T C COL27A1 Missense_Mutation p.L1693P 0.33 unknown(0) TCGA-EJ-5525-01 9 130697931 130697931 C T DPM2 3'UTR 0.39 TCGA-EJ-5525-01 9 131396015 131396015 G A WDR34 3'UTR 0.41 TCGA-EJ-5525-01 9 132400168 132400168 C T ASB6 Silent p.P389P 0.41 TCGA-EJ-5525-01 X 20033399 20033399 C T MAP7D2 Missense_Mutation p.R564H 0.82 deleterious(0.01) unknown(0) TCGA-EJ-5525-01 X 48673411 48673411 C T HDAC6 Missense_Mutation p.H368Y 0.65 deleterious(0) probably_damaging(0.995) TCGA-EJ-5526-01 10 12940424 12940424 G A CCDC3 Missense_Mutation p.R269W 0.14 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-EJ-5526-01 11 5172911 5172911 C T OR52A1 Missense_Mutation p.R230H 0.19 tolerated(0.32) benign(0.013) TCGA-EJ-5526-01 11 57068002 57068002 C T TNKS1BP1 Intron 0.19 TCGA-EJ-5526-01 11 76730798 76730798 T G ACER3 Missense_Mutation p.L243R 0.15 tolerated(0.05) probably_damaging(0.957) TCGA-EJ-5526-01 15 65041630 65041630 G A RBPMS2 Silent p.N89N 0.20 TCGA-EJ-5526-01 16 83999180 83999180 C T OSGIN1 Silent p.Y334Y 0.25 TCGA-EJ-5526-01 16 88061088 88061088 G C BANP Splice_Site p.X291_splice 0.08 TCGA-EJ-5526-01 16 88967911 88967911 C A CBFA2T3 Splice_Site p.X102_splice 0.21 TCGA-EJ-5526-01 17 4638741 4638741 G T CXCL16 Missense_Mutation p.P141T 0.06 tolerated(0.19) probably_damaging(0.982) TCGA-EJ-5526-01 18 10671739 10671739 C T PIEZO2 Missense_Mutation p.G2682R 0.23 deleterious(0) probably_damaging(0.998) TCGA-EJ-5526-01 18 9547949 9547949 G C PPP4R1 Missense_Mutation p.D897E 0.37 tolerated(0.9) benign(0.001) TCGA-EJ-5526-01 19 18898325 18898325 C G COMP Silent p.A370A 0.21 TCGA-EJ-5526-01 19 4847750 4847750 G - PLIN3 Frame_Shift_Del p.Q263Rfs*14 0.41 TCGA-EJ-5526-01 1 11855381 11855381 C T MTHFR Missense_Mutation p.V269M 0.30 deleterious(0.03) benign(0.2) TCGA-EJ-5526-01 1 157765730 157765730 G A FCRL1 3'UTR 0.20 TCGA-EJ-5526-01 1 214171237 214171237 C T PROX1 Silent p.S453S 0.23 TCGA-EJ-5526-01 1 215848631 215848631 C T USH2A Missense_Mutation p.D4208N 0.29 benign(0.013) TCGA-EJ-5526-01 20 16347999 16347999 A C KIF16B Missense_Mutation p.V1324G 0.14 deleterious_low_confidence(0) benign(0.002) TCGA-EJ-5526-01 20 42788455 42788455 G A JPH2 Silent p.H324H 0.22 TCGA-EJ-5526-01 21 15884893 15884893 T A SAMSN1 Missense_Mutation p.D162V 0.28 tolerated(0.08) possibly_damaging(0.743) TCGA-EJ-5526-01 22 26299697 26299697 G A MYO18B Missense_Mutation p.V1683I 0.42 tolerated(0.08) benign(0.12) TCGA-EJ-5526-01 22 39917369 39917369 G A ATF4 5'UTR 0.06 TCGA-EJ-5526-01 2 76975914 76975914 G A LRRTM4 Silent p.S560S 0.24 TCGA-EJ-5526-01 2 86360495 86360495 G A PTCD3 Missense_Mutation p.M493I 0.05 tolerated(0.6) benign(0.002) TCGA-EJ-5526-01 3 156266713 156266713 G A SSR3 Missense_Mutation p.R114W 0.22 deleterious(0) probably_damaging(0.97) TCGA-EJ-5526-01 3 19924217 19924217 G C EFHB Missense_Mutation p.P718R 0.22 tolerated(0.39) benign(0.07) TCGA-EJ-5526-01 3 49698154 49698154 G A BSN Missense_Mutation p.R2959H 0.11 unknown(0) TCGA-EJ-5526-01 5 55250760 55250772 CATTCCACCCAAA - IL6ST Frame_Shift_Del p.L439Rfs*8 0.21 TCGA-EJ-5526-01 6 31590596 31590598 GGG - PRRC2A In_Frame_Del p.G11del 0.16 TCGA-EJ-5526-01 6 7230059 7230059 G A RREB1 Missense_Mutation p.R576Q 0.26 tolerated(1) benign(0.002) TCGA-EJ-5526-01 6 84333021 84333021 T C SNAP91 Missense_Mutation p.Q269R 0.12 deleterious(0.02) unknown(0) TCGA-EJ-5526-01 7 43918497 43918497 C A URGCP Missense_Mutation p.A189S 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-EJ-5526-01 8 38793568 38793569 GG - PLEKHA2 Splice_Site p.X66_splice 0.11 TCGA-EJ-5526-01 9 130914560 130914560 A G LCN2 Missense_Mutation p.I192V 0.32 tolerated(0.21) benign(0.009) TCGA-EJ-5526-01 9 77280437 77280437 G A RORB Missense_Mutation p.R309H 0.28 deleterious(0) probably_damaging(0.999) TCGA-EJ-5526-01 X 34961794 34961794 T C FAM47B Silent p.H282H 0.54 TCGA-EJ-5526-01 X 37553558 37553558 A G XK Missense_Mutation p.I89V 0.43 tolerated(0.6) benign(0.122) TCGA-EJ-5527-01 11 120833172 120833172 G A GRIK4 Missense_Mutation p.R683H 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-EJ-5527-01 12 56554394 56554394 C G MYL6 Intron 0.06 TCGA-EJ-5527-01 12 56554423 56554423 T A MYL6 Missense_Mutation p.H147Q 0.06 tolerated(0.33) benign(0) TCGA-EJ-5527-01 12 56554425 56554425 T G MYL6 Missense_Mutation p.I148S 0.06 deleterious(0) benign(0.081) TCGA-EJ-5527-01 12 63976243 63976243 T C DPY19L2 Silent p.L556L 0.21 TCGA-EJ-5527-01 13 24455845 24455845 C A MIPEP Missense_Mutation p.V149L 0.08 deleterious(0.01) possibly_damaging(0.505) TCGA-EJ-5527-01 13 36886567 36886567 G A SPG20 Missense_Mutation p.P511S 0.13 deleterious(0.01) probably_damaging(0.988) TCGA-EJ-5527-01 14 103442220 103442220 C G CDC42BPB Missense_Mutation p.E463Q 0.08 deleterious(0.02) possibly_damaging(0.616) TCGA-EJ-5527-01 14 51446111 51446111 G A TRIM9 Silent p.N688N 0.24 TCGA-EJ-5527-01 15 41523608 41523608 C T CHP1 Missense_Mutation p.R10W 0.25 deleterious(0.01) possibly_damaging(0.871) TCGA-EJ-5527-01 16 89294346 89294346 G T ZNF778 Missense_Mutation p.E522D 0.06 tolerated(0.55) benign(0.184) TCGA-EJ-5527-01 17 1633695 1633695 G T WDR81 Missense_Mutation p.R1230L 0.07 tolerated(0.08) probably_damaging(0.999) TCGA-EJ-5527-01 17 19559759 19559759 G A ALDH3A2 Silent p.T184T 0.16 TCGA-EJ-5527-01 18 74091047 74091047 T A ZNF516 Missense_Mutation p.Q1008L 0.45 tolerated(0.09) benign(0.395) TCGA-EJ-5527-01 19 36431059 36431059 G A LRFN3 Silent p.L244L 0.06 TCGA-EJ-5527-01 1 10713982 10713982 C - CASZ1 Frame_Shift_Del p.G711Afs*21 0.10 TCGA-EJ-5527-01 1 114510461 114510461 T C HIPK1 Silent p.L819L 0.03 TCGA-EJ-5527-01 1 157558993 157558993 C G FCRL4 Splice_Site p.X103_splice 0.11 TCGA-EJ-5527-01 1 200978472 200978472 C A KIF21B Missense_Mutation p.Q62H 0.10 tolerated(0.2) possibly_damaging(0.483) TCGA-EJ-5527-01 1 20304968 20304968 C G PLA2G2A Missense_Mutation p.K30N 0.15 tolerated(0.19) possibly_damaging(0.776) TCGA-EJ-5527-01 1 94508397 94508397 A G ABCA4 Missense_Mutation p.V1083A 0.05 deleterious(0) possibly_damaging(0.73) TCGA-EJ-5527-01 21 42807818 42807818 G A MX1 Missense_Mutation p.D54N 0.04 deleterious(0.01) possibly_damaging(0.838) TCGA-EJ-5527-01 22 32229973 32229973 G A DEPDC5 Intron 0.05 TCGA-EJ-5527-01 22 42610895 42610895 A G TCF20 Silent p.F139F 0.26 TCGA-EJ-5527-01 2 106710437 106710437 C G UXS1 3'UTR 0.05 TCGA-EJ-5527-01 2 168099282 168099282 T G XIRP2 Silent p.L460L 0.11 TCGA-EJ-5527-01 2 208618360 208618362 AGA - CCNYL1 In_Frame_Del p.R290del 0.18 TCGA-EJ-5527-01 2 230657838 230657838 T C TRIP12 Missense_Mutation p.Q1256R 0.11 deleterious(0.01) benign(0.344) TCGA-EJ-5527-01 2 239000066 239000066 A G SCLY Intron 0.14 TCGA-EJ-5527-01 2 95713710 95713710 G A MAL Missense_Mutation p.G34R 0.29 deleterious(0) probably_damaging(1) TCGA-EJ-5527-01 3 108724127 108724127 G A MORC1 Silent p.G601G 0.04 TCGA-EJ-5527-01 3 160037613 160037613 C T IFT80 Missense_Mutation p.V298M 0.03 deleterious(0) possibly_damaging(0.634) TCGA-EJ-5527-01 3 25833004 25833004 T C OXSM Silent p.L165L 0.10 TCGA-EJ-5527-01 3 37125219 37125219 A G LRRFIP2 Silent p.L396L 0.21 TCGA-EJ-5527-01 4 36130284 36130284 T G ARAP2 Silent p.R1171R 0.06 TCGA-EJ-5527-01 4 55956221 55956221 G A KDR Nonsense_Mutation p.R1032* 0.03 TCGA-EJ-5527-01 5 148207351 148207351 T G ADRB2 Silent p.S319S 0.09 TCGA-EJ-5527-01 5 156479438 156479438 G A HAVCR1 Missense_Mutation p.P203S 0.12 tolerated(0.23) unknown(0) TCGA-EJ-5527-01 5 171821588 171821588 T G SH3PXD2B Silent p.I96I 0.11 TCGA-EJ-5527-01 6 43270068 43270068 C T SLC22A7 Missense_Mutation p.R398C 0.28 deleterious(0.02) probably_damaging(0.971) TCGA-EJ-5527-01 7 86468360 86468360 C T GRM3 Silent p.S510S 0.20 TCGA-EJ-5527-01 9 136231748 136231748 T - SURF4 Frame_Shift_Del p.T171Pfs*21 0.18 TCGA-EJ-5527-01 X 142717743 142717745 TAC AA SLITRK4 Frame_Shift_Del p.V394Ffs*15 0.26 TCGA-EJ-5527-01 X 39914706 39914706 A G BCOR Silent p.Y1552Y 0.10 TCGA-EJ-5530-01 10 24889811 24889811 G A ARHGAP21 Missense_Mutation p.R966W 0.08 deleterious(0) probably_damaging(0.999) TCGA-EJ-5530-01 10 76854507 76854507 C T DUSP13 Missense_Mutation p.C225Y 0.27 tolerated(0.06) probably_damaging(0.934) TCGA-EJ-5530-01 10 91470871 91470871 G A KIF20B Missense_Mutation p.S215N 0.08 tolerated(0.45) benign(0.006) TCGA-EJ-5530-01 11 55798258 55798258 C T OR5AS1 Missense_Mutation p.R122C 0.09 deleterious(0.02) benign(0.091) TCGA-EJ-5530-01 11 64939787 64939787 G A SPDYC Missense_Mutation p.S110N 0.06 tolerated(1) benign(0.015) TCGA-EJ-5530-01 12 10562330 10562330 G T KLRC4 5'UTR 0.28 TCGA-EJ-5530-01 13 49776084 49776084 G T FNDC3A Missense_Mutation p.V1046F 0.04 deleterious(0.05) benign(0.007) TCGA-EJ-5530-01 13 58299273 58299273 C T PCDH17 Missense_Mutation p.R1109W 0.04 deleterious_low_confidence(0) possibly_damaging(0.505) TCGA-EJ-5530-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.21 deleterious(0) probably_damaging(0.999) TCGA-EJ-5530-01 14 21549757 21549757 G A ARHGEF40 Silent p.R910R 0.12 TCGA-EJ-5530-01 14 32295838 32295838 C T NUBPL Missense_Mutation p.A204V 0.20 deleterious(0.04) benign(0.391) TCGA-EJ-5530-01 14 59113436 59113436 C T DACT1 Missense_Mutation p.R699W 0.05 deleterious(0) probably_damaging(0.97) TCGA-EJ-5530-01 15 101425511 101425511 A G ALDH1A3 Missense_Mutation p.K47E 0.27 tolerated(0.06) benign(0.123) TCGA-EJ-5530-01 15 34649647 34649647 C T NUTM1 Silent p.D1118D 0.42 TCGA-EJ-5530-01 15 85410592 85410592 C T ALPK3 Nonsense_Mutation p.R1792* 0.05 TCGA-EJ-5530-01 16 71419500 71419500 C T CALB2 Silent p.D216D 0.24 TCGA-EJ-5530-01 16 7568237 7568237 C T RBFOX1 Missense_Mutation p.A59V 0.10 deleterious(0) probably_damaging(0.998) TCGA-EJ-5530-01 16 81078505 81078505 C G ATMIN Missense_Mutation p.T801R 0.03 deleterious(0.01) possibly_damaging(0.868) TCGA-EJ-5530-01 16 830489 830489 C T MSLNL Missense_Mutation p.R171H 0.08 benign(0.001) TCGA-EJ-5530-01 17 15441443 15441443 A G TVP23C Intron 0.06 TCGA-EJ-5530-01 17 25931720 25931720 C T KSR1 Missense_Mutation p.P412L 0.13 tolerated(0.13) benign(0.003) TCGA-EJ-5530-01 17 73663474 73663474 C T SAP30BP Silent p.L8L 0.08 TCGA-EJ-5530-01 19 15132481 15132481 G A CCDC105 Silent p.T365T 0.12 TCGA-EJ-5530-01 19 21990989 21990989 G C ZNF43 Missense_Mutation p.T617S 0.06 tolerated(0.13) benign(0.192) TCGA-EJ-5530-01 19 54646887 54646887 G A CNOT3 Missense_Mutation p.E20K 0.07 deleterious(0) probably_damaging(0.994) TCGA-EJ-5530-01 19 56572913 56572913 C T NLRP5 3'UTR 0.05 TCGA-EJ-5530-01 19 9070399 9070399 C T MUC16 Missense_Mutation p.V5683I 0.09 unknown(0) TCGA-EJ-5530-01 1 111660758 111660758 T C DRAM2 3'UTR 0.11 TCGA-EJ-5530-01 1 157104014 157104014 T C ETV3 Missense_Mutation p.Y97C 0.09 deleterious(0) probably_damaging(0.998) TCGA-EJ-5530-01 1 181727100 181727100 C T CACNA1E Silent p.F1449F 0.10 TCGA-EJ-5530-01 1 241946665 241946665 C G WDR64 Missense_Mutation p.S886C 0.04 deleterious(0) probably_damaging(0.992) TCGA-EJ-5530-01 1 24706307 24706307 G C STPG1 Missense_Mutation p.R100G 0.06 deleterious(0) probably_damaging(1) TCGA-EJ-5530-01 1 32687990 32687990 G - EIF3I 5'UTR 0.10 TCGA-EJ-5530-01 1 46034256 46034256 C G AKR1A1 Missense_Mutation p.R218G 0.07 deleterious(0) probably_damaging(0.917) TCGA-EJ-5530-01 1 7700505 7700505 G A CAMTA1 Missense_Mutation p.E186K 0.04 deleterious(0.02) probably_damaging(0.986) TCGA-EJ-5530-01 1 9171452 9171452 G A GPR157 Silent p.D160D 0.15 TCGA-EJ-5530-01 20 18505662 18505662 C T SEC23B Silent p.S229S 0.05 TCGA-EJ-5530-01 22 21330001 21330001 G T AIFM3 Missense_Mutation p.E247D 0.08 tolerated(0.28) benign(0.042) TCGA-EJ-5530-01 22 43289513 43289513 G A PACSIN2 Missense_Mutation p.A56V 0.09 deleterious(0) probably_damaging(0.972) TCGA-EJ-5530-01 2 125521376 125521376 C T CNTNAP5 Nonsense_Mutation p.R787* 0.17 TCGA-EJ-5530-01 2 179640233 179640233 G A TTN Missense_Mutation p.R2120W 0.07 TCGA-EJ-5530-01 2 204039932 204039932 C G NBEAL1 Nonsense_Mutation p.S2100* 0.04 TCGA-EJ-5530-01 2 20458017 20458017 G T PUM2 Missense_Mutation p.S824Y 0.26 deleterious(0) probably_damaging(0.959) TCGA-EJ-5530-01 2 220331970 220331970 C T SPEG Silent p.L986L 0.08 TCGA-EJ-5530-01 2 242814653 242814653 G A CXXC11 Missense_Mutation p.V316I 0.07 tolerated(0.26) benign(0.086) TCGA-EJ-5530-01 2 31637577 31637577 G C XDH 5'UTR 0.08 TCGA-EJ-5530-01 3 108818255 108818255 T C MORC1 Missense_Mutation p.T125A 0.09 deleterious(0) probably_damaging(0.917) TCGA-EJ-5530-01 3 192517393 192517393 G T MB21D2 Nonsense_Mutation p.Y86* 0.13 TCGA-EJ-5530-01 3 9969889 9969889 T A IL17RC Missense_Mutation p.C359S 0.06 deleterious(0) probably_damaging(0.986) TCGA-EJ-5530-01 4 107845202 107845202 C T DKK2 Missense_Mutation p.R230H 0.09 deleterious(0) probably_damaging(0.987) TCGA-EJ-5530-01 5 140250899 140250899 G A PCDHA11 Silent p.T737T 0.12 TCGA-EJ-5530-01 5 140476832 140476832 G A PCDHB2 3'UTR 0.07 TCGA-EJ-5530-01 5 140794640 140794640 C T PCDHGA10 Missense_Mutation p.A633V 0.31 deleterious_low_confidence(0.04) benign(0.426) TCGA-EJ-5530-01 5 19503127 19503127 G A CDH18 Missense_Mutation p.P535L 0.09 tolerated(0.12) probably_damaging(0.999) TCGA-EJ-5530-01 6 32021196 32021196 G A TNXB Silent p.R2918R 0.21 TCGA-EJ-5530-01 7 36423479 36423479 A G KIAA0895 Missense_Mutation p.F56S 0.07 deleterious_low_confidence(0.04) benign(0) TCGA-EJ-5530-01 8 146017507 146017507 C T RPL8 Missense_Mutation p.R3H 0.11 tolerated(0.08) benign(0.075) TCGA-EJ-5530-01 8 23538928 23538928 A G NKX3-1 Missense_Mutation p.W171R 0.06 deleterious(0) probably_damaging(1) TCGA-EJ-5530-01 8 28633369 28633369 G A INTS9 Silent p.I490I 0.06 TCGA-EJ-5530-01 8 88885073 88885073 C T DCAF4L2 Missense_Mutation p.R376Q 0.42 tolerated(0.6) benign(0.014) TCGA-EJ-5530-01 9 137803057 137803057 T C FCN1 Missense_Mutation p.K219E 0.02 deleterious(0.02) probably_damaging(0.942) TCGA-EJ-5530-01 9 139090531 139090531 C T LHX3 Missense_Mutation p.G253R 0.42 tolerated(0.07) possibly_damaging(0.474) TCGA-EJ-5530-01 X 148037365 148037365 G A AFF2 Missense_Mutation p.R597H 0.20 deleterious(0) probably_damaging(0.998) TCGA-EJ-5530-01 X 150911712 150911712 G A CNGA2 Missense_Mutation p.R246H 0.04 deleterious(0) probably_damaging(1) TCGA-EJ-5530-01 X 2867523 2867523 G A ARSE Missense_Mutation p.P226S 0.05 tolerated(0.42) possibly_damaging(0.832) TCGA-EJ-5530-01 X 83411185 83411185 A T RPS6KA6 Silent p.V52V 0.11 TCGA-EJ-5531-01 10 15256160 15256160 C - FAM171A1 Frame_Shift_Del p.G476Afs*65 0.09 TCGA-EJ-5531-01 10 61832387 61832388 - T ANK3 Frame_Shift_Ins p.I2751Nfs*14 0.10 TCGA-EJ-5531-01 11 1081737 1081737 C T MUC2 Silent p.N555N 0.18 TCGA-EJ-5531-01 11 128868319 128868319 T C ARHGAP32 Missense_Mutation p.M350V 0.13 deleterious(0.01) possibly_damaging(0.522) TCGA-EJ-5531-01 11 132177693 132177693 C T NTM Missense_Mutation p.R213W 0.16 deleterious(0) probably_damaging(0.969) TCGA-EJ-5531-01 11 35313864 35313864 G A SLC1A2 Missense_Mutation p.A354V 0.04 deleterious(0.01) possibly_damaging(0.85) TCGA-EJ-5531-01 11 55418689 55418689 T A OR4S2 Missense_Mutation p.F104I 0.06 deleterious(0.01) benign(0.235) TCGA-EJ-5531-01 11 63059054 63059054 C G SLC22A10 Missense_Mutation p.Q149E 0.12 deleterious(0) probably_damaging(0.909) TCGA-EJ-5531-01 11 6630105 6630105 T G ILK Intron 0.10 TCGA-EJ-5531-01 12 109181845 109181845 C G SSH1 Missense_Mutation p.R1023S 0.13 tolerated_low_confidence(0.09) benign(0.017) TCGA-EJ-5531-01 12 27081791 27081791 A C ASUN Missense_Mutation p.D116E 0.05 tolerated(0.38) benign(0.115) TCGA-EJ-5531-01 12 49430959 49430959 G A KMT2D Nonsense_Mutation p.Q3394* 0.16 TCGA-EJ-5531-01 12 53567192 53567192 G A CSAD Silent p.L48L 0.09 TCGA-EJ-5531-01 12 72026778 72026778 C T ZFC3H1 Missense_Mutation p.R902H 0.08 deleterious(0) probably_damaging(0.994) TCGA-EJ-5531-01 13 77570129 77570129 T G CLN5 Missense_Mutation p.C193W 0.04 deleterious(0) probably_damaging(0.999) TCGA-EJ-5531-01 16 20554289 20554289 G A ACSM2B Missense_Mutation p.P486S 0.09 deleterious(0.02) possibly_damaging(0.795) TCGA-EJ-5531-01 16 9858034 9858034 C A GRIN2A Nonsense_Mutation p.E1123* 0.06 TCGA-EJ-5531-01 17 28616489 28616489 T C BLMH Missense_Mutation p.I75V 0.11 tolerated(0.08) benign(0.03) TCGA-EJ-5531-01 17 32597376 32597376 G A CCL7 Missense_Mutation p.A23T 0.10 tolerated(0.07) benign(0.2) TCGA-EJ-5531-01 17 47696432 47696432 A G SPOP Missense_Mutation p.W131R 0.11 tolerated(0.1) probably_damaging(0.999) TCGA-EJ-5531-01 17 7752710 7752710 G T KDM6B Missense_Mutation p.R1035L 0.07 benign(0.034) TCGA-EJ-5531-01 18 14104994 14104994 A C ZNF519 Silent p.P515P 0.07 TCGA-EJ-5531-01 19 55341560 55341560 G A KIR3DL1 Missense_Mutation p.D389N 0.16 tolerated(0.19) benign(0.412) TCGA-EJ-5531-01 1 11733821 11733821 G - FBXO6 Frame_Shift_Del p.A266Pfs*95 0.12 TCGA-EJ-5531-01 1 157067666 157067666 C T ETV3L Missense_Mutation p.V201I 0.11 tolerated(0.66) benign(0) TCGA-EJ-5531-01 1 212118153 212118153 C T INTS7 Silent p.L858L 0.12 TCGA-EJ-5531-01 1 86590963 86590963 G T COL24A1 Silent p.T352T 0.04 TCGA-EJ-5531-01 3 121409629 121409629 C T GOLGB1 Missense_Mutation p.R2861Q 0.09 possibly_damaging(0.843) TCGA-EJ-5531-01 4 146824230 146824230 G A ZNF827 Nonsense_Mutation p.Q61* 0.15 TCGA-EJ-5531-01 4 174449842 174449842 C T HAND2 Intron 0.28 TCGA-EJ-5531-01 4 48139432 48139432 C T TEC 3'UTR 0.18 TCGA-EJ-5531-01 6 55142195 55142195 T C HCRTR2 Silent p.S260S 0.10 TCGA-EJ-5531-01 6 8097597 8097597 G A EEF1E1 Missense_Mutation p.T64I 0.10 deleterious(0.01) benign(0.35) TCGA-EJ-5531-01 8 110439239 110439239 G A PKHD1L1 Missense_Mutation p.A952T 0.07 tolerated(0.16) benign(0.155) TCGA-EJ-5531-01 8 143558817 143558817 C T BAI1 Missense_Mutation p.R432C 0.05 deleterious(0) possibly_damaging(0.898) TCGA-EJ-5531-01 8 79645969 79645969 C G IL7 Missense_Mutation p.L171F 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-EJ-5531-01 9 136597652 136597652 G A SARDH Missense_Mutation p.R135W 0.15 tolerated(0.06) possibly_damaging(0.773) TCGA-EJ-5531-01 9 3828207 3828207 T C GLIS3 3'UTR 0.07 TCGA-EJ-5531-01 X 48386620 48386620 A T EBP Splice_Site p.X157_splice 0.17 TCGA-EJ-5532-01 10 123954657 123954657 C T TACC2 Silent p.P1979P 0.32 TCGA-EJ-5532-01 10 124358388 124358388 G A DMBT1 Missense_Mutation p.D1019N 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-EJ-5532-01 10 74653450 74653450 G T OIT3 5'UTR 0.27 TCGA-EJ-5532-01 11 49974537 49974537 C T OR4C13 Missense_Mutation p.T188I 0.26 tolerated_low_confidence(0.06) benign(0.068) TCGA-EJ-5532-01 11 76868351 76868351 G A MYO7A Silent p.V254V 0.44 TCGA-EJ-5532-01 12 112516059 112516059 A G NAA25 Silent p.Y199Y 0.04 TCGA-EJ-5532-01 12 1988135 1988135 G A CACNA2D4 Missense_Mutation p.A544V 0.26 tolerated(0.61) benign(0.053) TCGA-EJ-5532-01 12 6172165 6172165 C T VWF Silent p.E496E 0.26 TCGA-EJ-5532-01 13 29600584 29600584 G A MTUS2 Silent p.T593T 0.23 TCGA-EJ-5532-01 15 48736776 48736776 C A FBN1 Missense_Mutation p.C2000F 0.32 probably_damaging(0.928) TCGA-EJ-5532-01 16 12136839 12136839 C T SNX29 Silent p.D111D 0.08 TCGA-EJ-5532-01 16 86565782 86565782 G A MTHFSD Silent p.L329L 0.29 TCGA-EJ-5532-01 17 16612678 16612678 T - CCDC144A Frame_Shift_Del p.M437Wfs*4 0.22 TCGA-EJ-5532-01 17 20910262 20910262 G A USP22 Silent p.T423T 0.13 TCGA-EJ-5532-01 17 74562331 74562331 G A ST6GALNAC2 Missense_Mutation p.T327I 0.33 probably_damaging(1) TCGA-EJ-5532-01 19 52003566 52003566 C T SIGLEC12 Intron 0.27 TCGA-EJ-5532-01 19 8604860 8604860 G A MYO1F Missense_Mutation p.R555C 0.31 deleterious(0) probably_damaging(0.993) TCGA-EJ-5532-01 1 152329411 152329415 TTGCT - FLG2 Frame_Shift_Del p.S283Ffs*18 0.28 TCGA-EJ-5532-01 1 158626393 158626393 G C SPTA1 Missense_Mutation p.D953E 0.28 tolerated(0.16) benign(0.034) TCGA-EJ-5532-01 1 177001717 177001717 G C ASTN1 Missense_Mutation p.T247S 0.14 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-EJ-5532-01 1 216371806 216371806 G A USH2A Missense_Mutation p.S1311L 0.29 benign(0.02) TCGA-EJ-5532-01 1 220142002 220142002 T G EPRS 3'UTR 0.25 TCGA-EJ-5532-01 1 31406163 31406163 A - PUM1 Frame_Shift_Del p.K1155Sfs*17 0.22 TCGA-EJ-5532-01 20 42806555 42806555 G T JPH2 Intron 0.44 TCGA-EJ-5532-01 2 27457443 27457443 G A CAD Missense_Mutation p.V1226I 0.31 tolerated(0.11) possibly_damaging(0.537) TCGA-EJ-5532-01 2 74758721 74758721 C T HTRA2 Intron 0.30 TCGA-EJ-5532-01 3 48638151 48638151 C T UQCRC1 Missense_Mutation p.M363I 0.12 tolerated(0.4) benign(0.009) TCGA-EJ-5532-01 4 154557748 154557748 C A KIAA0922 3'UTR 0.08 TCGA-EJ-5532-01 5 149212486 149212486 A T PPARGC1B Missense_Mutation p.M284L 0.26 tolerated(0.59) benign(0.002) TCGA-EJ-5532-01 5 149360521 149360521 T A SLC26A2 Silent p.L455L 0.30 TCGA-EJ-5532-01 5 54405924 54405924 G A GZMA Missense_Mutation p.G235R 0.26 deleterious(0) probably_damaging(0.999) TCGA-EJ-5532-01 6 28227527 28227527 G A NKAPL Silent p.E126E 0.32 TCGA-EJ-5532-01 7 116937778 116937778 G C WNT2 Missense_Mutation p.N247K 0.33 deleterious(0.02) probably_damaging(0.997) TCGA-EJ-5532-01 7 141955370 141955370 G A PRSS58 Missense_Mutation p.A55V 0.31 deleterious(0) probably_damaging(0.971) TCGA-EJ-5532-01 7 77423241 77423241 A C TMEM60 3'UTR 0.38 TCGA-EJ-5542-01 10 27329050 27329050 T C ANKRD26 Missense_Mutation p.E740G 0.07 deleterious(0) probably_damaging(0.974) TCGA-EJ-5542-01 10 90699527 90699527 T G ACTA2 Intron 0.25 TCGA-EJ-5542-01 11 57147239 57147239 C T PRG3 Missense_Mutation p.D35N 0.28 tolerated(0.05) benign(0.311) TCGA-EJ-5542-01 11 58979394 58979394 G T MPEG1 Missense_Mutation p.N315K 0.17 tolerated(0.37) benign(0.007) TCGA-EJ-5542-01 11 61505663 61505663 G A DAGLA Missense_Mutation p.R547Q 0.08 tolerated(0.05) benign(0.161) TCGA-EJ-5542-01 11 74053512 74053512 C T PGM2L1 Silent p.K542K 0.07 TCGA-EJ-5542-01 12 57112065 57112065 T C NACA Intron 0.31 TCGA-EJ-5542-01 13 113536465 113536465 G A ATP11A 3'UTR 0.30 TCGA-EJ-5542-01 14 24976626 24976626 T C CMA1 Missense_Mutation p.K49E 0.25 tolerated(0.58) benign(0) TCGA-EJ-5542-01 14 88983485 88983485 C T PTPN21 Missense_Mutation p.V101M 0.27 deleterious(0) probably_damaging(0.968) TCGA-EJ-5542-01 15 100332853 100332853 T G AC090825.1 3'Flank 0.05 TCGA-EJ-5542-01 15 48788323 48788323 T C FBN1 Missense_Mutation p.Y798C 0.26 probably_damaging(0.964) TCGA-EJ-5542-01 16 3613171 3613171 G A NLRC3 Silent p.S636S 0.24 TCGA-EJ-5542-01 17 2076132 2076132 C T SMG6 Silent p.S1059S 0.17 TCGA-EJ-5542-01 17 38062140 38062140 C T GSDMB Silent p.A329A 0.29 TCGA-EJ-5542-01 18 12329786 12329786 A C AFG3L2 Intron 0.05 TCGA-EJ-5542-01 18 22804629 22804629 T C ZNF521 Missense_Mutation p.I1085V 0.05 tolerated(0.85) benign(0.002) TCGA-EJ-5542-01 19 38810914 38810914 T C KCNK6 Splice_Site p.X108_splice 0.05 TCGA-EJ-5542-01 19 42569514 42569514 C T GRIK5 Silent p.V35V 0.04 TCGA-EJ-5542-01 19 6216424 6216424 C T MLLT1 Silent p.R433R 0.17 TCGA-EJ-5542-01 1 12979764 12979764 G A PRAMEF7 Missense_Mutation p.R319H 0.08 possibly_damaging(0.526) TCGA-EJ-5542-01 1 150551355 150551355 C T MCL1 Missense_Mutation p.D218N 0.26 deleterious(0.05) benign(0.128) TCGA-EJ-5542-01 1 16091554 16091554 G C FBLIM1 Missense_Mutation p.V26L 0.25 deleterious(0.04) possibly_damaging(0.831) TCGA-EJ-5542-01 1 42898890 42898890 T G ZMYND12 Missense_Mutation p.D300A 0.07 tolerated(0.43) benign(0.034) TCGA-EJ-5542-01 2 132290465 132290465 G T CCDC74A Missense_Mutation p.G302V 0.09 deleterious(0) possibly_damaging(0.724) TCGA-EJ-5542-01 2 89417050 89417050 C A IGKV1-17 Missense_Mutation p.C45F 0.20 deleterious(0.02) possibly_damaging(0.896) TCGA-EJ-5542-01 4 126337635 126337635 C G FAT4 Missense_Mutation p.N2292K 0.22 probably_damaging(0.972) TCGA-EJ-5542-01 4 155532986 155532986 T C FGG Silent p.A124A 0.28 TCGA-EJ-5542-01 5 136963996 136963996 C T KLHL3 Silent p.R527R 0.10 TCGA-EJ-5542-01 5 140168403 140168403 A T PCDHA1 Intron 0.27 TCGA-EJ-5542-01 5 169483749 169483749 G A DOCK2 Missense_Mutation p.V1453I 0.25 tolerated(0.18) benign(0) TCGA-EJ-5542-01 5 60188403 60188403 C T ERCC8 Intron 0.18 TCGA-EJ-5542-01 6 87965133 87965137 AGTAA - ZNF292 Frame_Shift_Del p.S596Rfs*23 0.20 TCGA-EJ-5542-01 8 23191091 23191091 C T LOXL2 Missense_Mutation p.M263I 0.27 tolerated(0.08) benign(0.002) TCGA-EJ-5542-01 8 28575417 28575417 T C EXTL3 Missense_Mutation p.F614S 0.09 tolerated(0.11) benign(0.019) TCGA-EJ-5542-01 8 94929378 94929378 G A PDP1 5'UTR 0.23 TCGA-EJ-5542-01 9 1053761 1053761 C T DMRT2 Missense_Mutation p.R189C 0.08 deleterious(0) probably_damaging(0.986) TCGA-EJ-5542-01 9 140243660 140243660 C G EXD3 Missense_Mutation p.D578H 0.22 deleterious(0) possibly_damaging(0.753) TCGA-EJ-7115-01 11 124751156 124751156 G T ROBO3 3'UTR 0.18 TCGA-EJ-7115-01 11 19077545 19077545 G C MRGPRX2 Missense_Mutation p.I135M 0.06 deleterious(0.02) possibly_damaging(0.907) TCGA-EJ-7115-01 11 44289106 44289106 G A ALX4 Nonsense_Mutation p.R282* 0.27 TCGA-EJ-7115-01 11 46396525 46396525 A G DGKZ Missense_Mutation p.H735R 0.20 deleterious(0.04) benign(0.12) TCGA-EJ-7115-01 11 64137784 64137784 C T RPS6KA4 Missense_Mutation p.R629C 0.11 tolerated(0.06) benign(0.081) TCGA-EJ-7115-01 11 65410052 65410052 G A SIPA1 Missense_Mutation p.R309H 0.18 deleterious(0) probably_damaging(0.999) TCGA-EJ-7115-01 11 9069059 9069059 T C SCUBE2 Missense_Mutation p.K616E 0.17 tolerated(0.16) benign(0.05) TCGA-EJ-7115-01 12 15710429 15710429 G T PTPRO Nonsense_Mutation p.E867* 0.26 TCGA-EJ-7115-01 13 32761791 32761791 C T FRY Nonsense_Mutation p.R1197* 0.43 TCGA-EJ-7115-01 13 44464253 44464253 T C LACC1 Silent p.I379I 0.08 TCGA-EJ-7115-01 13 53286893 53286893 C G LECT1 Missense_Mutation p.G194R 0.32 tolerated(0.2) probably_damaging(0.966) TCGA-EJ-7115-01 14 23866021 23866021 C T MYH6 Missense_Mutation p.R725H 0.06 tolerated(0.05) probably_damaging(0.984) TCGA-EJ-7115-01 15 75105252 75105253 CC - LMAN1L Frame_Shift_Del p.H21Qfs*3 0.20 TCGA-EJ-7115-01 16 31102453 31102453 G T VKORC1 3'UTR 0.27 TCGA-EJ-7115-01 16 3778439 3778451 TTGCTGCTGCTGC - CREBBP Frame_Shift_Del p.Q2199Hfs*99 0.33 TCGA-EJ-7115-01 17 40865284 40865284 T C EZH1 Missense_Mutation p.T383A 0.35 tolerated(0.8) benign(0.001) TCGA-EJ-7115-01 17 41063519 41063519 G A G6PC 3'UTR 0.17 TCGA-EJ-7115-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-EJ-7115-01 18 11881048 11881048 G A GNAL Missense_Mutation p.V431M 0.40 tolerated(0.09) probably_damaging(0.984) TCGA-EJ-7115-01 18 52901781 52901781 C T TCF4 Missense_Mutation p.R597K 0.23 tolerated(0.14) benign(0.032) TCGA-EJ-7115-01 19 16643484 16643484 C T CHERP Missense_Mutation p.R200H 0.05 deleterious(0) possibly_damaging(0.474) TCGA-EJ-7115-01 19 36334480 36334480 C T NPHS1 Missense_Mutation p.R743H 0.04 tolerated(0.07) possibly_damaging(0.532) TCGA-EJ-7115-01 19 44103389 44103389 G A ZNF576 Silent p.R164R 0.07 TCGA-EJ-7115-01 1 107600027 107600027 C T PRMT6 Silent p.L230L 0.29 TCGA-EJ-7115-01 1 145415767 145415767 A C HFE2 Missense_Mutation p.N196H 0.26 deleterious(0) probably_damaging(1) TCGA-EJ-7115-01 1 157105282 157105282 T A ETV3 Nonsense_Mutation p.K89* 0.35 TCGA-EJ-7115-01 1 174417218 174417218 C G GPR52 5'UTR 0.23 TCGA-EJ-7115-01 1 17594365 17594365 C T PADI3 Missense_Mutation p.T187M 0.28 deleterious(0.01) possibly_damaging(0.658) TCGA-EJ-7115-01 1 203134969 203134969 C T ADORA1 Missense_Mutation p.R308C 0.15 tolerated(0.23) benign(0.001) TCGA-EJ-7115-01 1 3328642 3328642 C T PRDM16 Silent p.S627S 0.24 TCGA-EJ-7115-01 1 46105995 46105995 A T GPBP1L1 Missense_Mutation p.S211T 0.09 tolerated(0.1) benign(0.304) TCGA-EJ-7115-01 1 92709886 92709886 G A C1orf146 Silent p.L91L 0.28 TCGA-EJ-7115-01 21 28306855 28306855 G A ADAMTS5 Missense_Mutation p.T540M 0.16 deleterious(0) possibly_damaging(0.773) TCGA-EJ-7115-01 2 158272362 158272362 G A CYTIP Missense_Mutation p.R303W 0.28 deleterious(0.01) probably_damaging(0.963) TCGA-EJ-7115-01 2 210993896 210993896 A G KANSL1L Silent p.V363V 0.24 TCGA-EJ-7115-01 2 219900337 219900337 C G CCDC108 Missense_Mutation p.R136T 0.28 deleterious(0.02) benign(0.333) TCGA-EJ-7115-01 2 75347894 75347894 C G TACR1 Missense_Mutation p.R130S 0.35 deleterious(0.02) probably_damaging(0.959) TCGA-EJ-7115-01 2 85777103 85777106 GAAT - GGCX Frame_Shift_Del p.H743Lfs*98 0.30 TCGA-EJ-7115-01 3 27459989 27459989 A C SLC4A7 Missense_Mutation p.S540R 0.21 deleterious(0.04) possibly_damaging(0.77) TCGA-EJ-7115-01 3 50127819 50127819 A G RBM5 5'UTR 0.26 TCGA-EJ-7115-01 4 138451634 138451634 C A PCDH18 Nonsense_Mutation p.E537* 0.26 TCGA-EJ-7115-01 4 166234520 166234520 T C KLHL2 Splice_Site p.X494_splice 0.24 TCGA-EJ-7115-01 4 190862186 190862186 A T FRG1 Nonsense_Mutation p.K8* 0.10 TCGA-EJ-7115-01 4 62599226 62599226 C T LPHN3 Silent p.H383H 0.23 TCGA-EJ-7115-01 5 110097209 110097209 C T SLC25A46 Silent p.D328D 0.05 TCGA-EJ-7115-01 5 148747557 148747557 G A PCYOX1L Silent p.E275E 0.23 TCGA-EJ-7115-01 6 101098516 101098516 T C ASCC3 Silent p.V1050V 0.41 TCGA-EJ-7115-01 6 76022647 76022647 A C FILIP1 Missense_Mutation p.S967R 0.29 tolerated(0.27) benign(0.177) TCGA-EJ-7115-01 6 91226267 91226269 GTT - MAP3K7 In_Frame_Del p.Q591del 0.18 TCGA-EJ-7115-01 7 133827909 133827909 C A LRGUK Missense_Mutation p.N194K 0.04 deleterious(0.02) benign(0.086) TCGA-EJ-7115-01 7 17915291 17915291 C - SNX13 Splice_Site p.X188_splice 0.33 TCGA-EJ-7115-01 7 72419933 72419933 C A POM121 3'UTR 0.08 TCGA-EJ-7115-01 8 101206436 101206436 A T SPAG1 Missense_Mutation p.N346Y 0.31 deleterious(0.01) benign(0.445) TCGA-EJ-7115-01 8 145535738 145535738 G A HSF1 Missense_Mutation p.R317H 0.28 tolerated(0.14) benign(0.001) TCGA-EJ-7115-01 X 153039436 153039436 C T PLXNB3 Silent p.A1157A 0.54 TCGA-EJ-7123-01 10 128973908 128973908 G A FAM196A Missense_Mutation p.T251M 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-EJ-7123-01 10 76855428 76855429 - AA DUSP13 Frame_Shift_Ins p.Y150Ffs*44 0.13 TCGA-EJ-7123-01 10 7797982 7797982 C A KIN 3'UTR 0.15 TCGA-EJ-7123-01 11 63398754 63398754 C T ATL3 Missense_Mutation p.G433S 0.05 tolerated(0.13) benign(0.003) TCGA-EJ-7123-01 12 112237730 112237730 G A ALDH2 Silent p.Q423Q 0.28 TCGA-EJ-7123-01 12 55945169 55945169 C G OR6C4 Silent p.L53L 0.19 TCGA-EJ-7123-01 12 66698883 66698883 A G HELB Missense_Mutation p.E187G 0.12 tolerated(0.08) benign(0.01) TCGA-EJ-7123-01 13 73347832 73347832 C T DIS3 Missense_Mutation p.R410K 0.18 tolerated(0.13) benign(0.085) TCGA-EJ-7123-01 15 73045050 73045050 G A ADPGK Missense_Mutation p.L375F 0.16 deleterious(0) probably_damaging(0.999) TCGA-EJ-7123-01 16 426140 426140 T C TMEM8A Missense_Mutation p.N407S 0.13 deleterious(0.01) possibly_damaging(0.857) TCGA-EJ-7123-01 16 57116361 57116361 C T NLRC5 Missense_Mutation p.A1841V 0.18 tolerated(0.06) benign(0.216) TCGA-EJ-7123-01 17 35736258 35736258 C G C17orf78 Missense_Mutation p.S110C 0.04 tolerated(0.13) possibly_damaging(0.847) TCGA-EJ-7123-01 17 40280784 40280784 G T RAB5C Missense_Mutation p.D100E 0.15 tolerated(0.26) benign(0.014) TCGA-EJ-7123-01 17 47696643 47696643 A C SPOP Missense_Mutation p.F102C 0.16 deleterious(0) probably_damaging(1) TCGA-EJ-7123-01 17 63739297 63739297 T - CEP112 Frame_Shift_Del p.E833Kfs*28 0.17 TCGA-EJ-7123-01 17 76168029 76168029 C T SYNGR2 3'UTR 0.12 TCGA-EJ-7123-01 18 6943285 6943285 G C LAMA1 Missense_Mutation p.H2987Q 0.04 deleterious(0.01) probably_damaging(0.984) TCGA-EJ-7123-01 19 44103213 44103213 A C ZNF576 Missense_Mutation p.T106P 0.08 tolerated(0.27) benign(0.001) TCGA-EJ-7123-01 1 147380335 147380335 G A GJA8 Missense_Mutation p.V85I 0.12 deleterious(0.04) benign(0.355) TCGA-EJ-7123-01 1 207940420 207940420 T A CD46 Missense_Mutation p.F246I 0.18 deleterious(0) probably_damaging(0.96) TCGA-EJ-7123-01 1 53692751 53692752 AG - MAGOH Frame_Shift_Del p.L136Yfs*8 0.18 TCGA-EJ-7123-01 1 91851252 91851252 T C HFM1 Missense_Mutation p.K212E 0.13 tolerated_low_confidence(0.45) benign(0.146) TCGA-EJ-7123-01 20 62737951 62737951 C T NPBWR2 Silent p.T78T 0.18 TCGA-EJ-7123-01 22 46930952 46930952 C T CELSR1 Missense_Mutation p.V706M 0.17 deleterious(0) probably_damaging(1) TCGA-EJ-7123-01 2 100916210 100916210 G C LONRF2 Missense_Mutation p.D412E 0.08 tolerated(0.3) benign(0.003) TCGA-EJ-7123-01 2 90078039 90078039 C T IGKV3D-20 Nonsense_Mutation p.Q26* 0.18 TCGA-EJ-7123-01 3 148896263 148896263 A G CP Silent p.S939S 0.06 TCGA-EJ-7123-01 3 150931786 150931786 C T P2RY14 Missense_Mutation p.V107I 0.17 tolerated(0.93) benign(0.144) TCGA-EJ-7123-01 4 169337892 169337892 A C DDX60L Missense_Mutation p.I889M 0.15 tolerated(1) benign(0.002) TCGA-EJ-7123-01 4 40119567 40119567 A G N4BP2 Missense_Mutation p.I581M 0.24 tolerated(0.21) probably_damaging(0.997) TCGA-EJ-7123-01 4 5862782 5862782 G A CRMP1 Missense_Mutation p.A209V 0.19 deleterious(0) possibly_damaging(0.882) TCGA-EJ-7123-01 4 7684513 7684513 A T SORCS2 Missense_Mutation p.D462V 0.22 deleterious(0) possibly_damaging(0.866) TCGA-EJ-7123-01 5 140795088 140795088 G A PCDHGA10 Silent p.T782T 0.13 TCGA-EJ-7123-01 5 171318481 171318481 T C FBXW11 Missense_Mutation p.N260S 0.14 deleterious(0.04) benign(0.03) TCGA-EJ-7123-01 5 178634552 178634552 C T ADAMTS2 Missense_Mutation p.E285K 0.06 deleterious(0.04) probably_damaging(0.992) TCGA-EJ-7123-01 5 26886127 26886127 T - CDH9 Frame_Shift_Del p.E526Dfs*15 0.16 TCGA-EJ-7123-01 5 5186169 5186169 G A ADAMTS16 Missense_Mutation p.M256I 0.17 tolerated(0.13) benign(0.004) TCGA-EJ-7123-01 6 170639605 170639605 G T FAM120B Missense_Mutation p.D662Y 0.10 deleterious(0) probably_damaging(0.997) TCGA-EJ-7123-01 6 170639606 170639606 A T FAM120B Missense_Mutation p.D662V 0.10 deleterious(0) probably_damaging(0.996) TCGA-EJ-7123-01 6 20486928 20486928 A G E2F3 Missense_Mutation p.Y298C 0.13 deleterious(0) probably_damaging(0.997) TCGA-EJ-7123-01 6 32037543 32037543 C T TNXB Missense_Mutation p.V1792M 0.26 probably_damaging(0.94) TCGA-EJ-7123-01 6 3850540 3850540 C G FAM50B Silent p.L165L 0.11 TCGA-EJ-7123-01 7 102087367 102087367 C T ORAI2 Silent p.F211F 0.12 TCGA-EJ-7123-01 7 148876421 148876421 C T ZNF398 Missense_Mutation p.P486L 0.16 deleterious(0.01) probably_damaging(1) TCGA-EJ-7123-01 7 150839292 150839292 G A AGAP3 Missense_Mutation p.V668I 0.17 tolerated(1) benign(0.013) TCGA-EJ-7123-01 7 151879331 151879331 G A KMT2C Nonsense_Mutation p.Q1872* 0.17 TCGA-EJ-7123-01 7 99079801 99079801 A C ZNF789 Intron 0.17 TCGA-EJ-7123-01 7 99669788 99669788 T C ZNF3 Missense_Mutation p.R107G 0.16 tolerated(0.41) benign(0) TCGA-EJ-7123-01 9 110250242 110250242 G T KLF4 Missense_Mutation p.P145T 0.21 tolerated(0.14) probably_damaging(0.991) TCGA-EJ-7125-01 10 115489132 115489132 C A CASP7 Missense_Mutation p.L282M 0.29 deleterious(0.03) probably_damaging(0.993) TCGA-EJ-7125-01 10 121595126 121595126 C T MCMBP Missense_Mutation p.V547M 0.35 tolerated(0.35) benign(0.007) TCGA-EJ-7125-01 11 1255481 1255481 G A MUC5B Silent p.A808A 0.27 TCGA-EJ-7125-01 11 65273529 65273531 TTG - MALAT1 RNA 0.26 TCGA-EJ-7125-01 13 114325879 114325879 C T GRK1 Missense_Mutation p.T298M 0.23 deleterious(0.04) benign(0.222) TCGA-EJ-7125-01 13 41635749 41635749 C T WBP4 5'UTR 0.29 TCGA-EJ-7125-01 15 80866543 80866543 A T ARNT2 Silent p.S457S 0.32 TCGA-EJ-7125-01 17 71334988 71334988 G A SDK2 Missense_Mutation p.S2086L 0.25 deleterious(0) probably_damaging(0.996) TCGA-EJ-7125-01 18 19395662 19395663 - T MIB1 Frame_Shift_Ins p.L523Ffs*18 0.22 TCGA-EJ-7125-01 18 43678107 43678107 C T ATP5A1 Intron 0.33 TCGA-EJ-7125-01 19 45029262 45029262 A G CEACAM20 RNA 0.30 TCGA-EJ-7125-01 19 7535101 7535101 G A ARHGEF18 Missense_Mutation p.G1147R 0.46 tolerated_low_confidence(0.68) benign(0.154) TCGA-EJ-7125-01 1 16641914 16641914 G A FBXO42 5'UTR 0.26 TCGA-EJ-7125-01 1 50642827 50642827 C T ELAVL4 Missense_Mutation p.T123I 0.29 deleterious(0) benign(0.387) TCGA-EJ-7125-01 1 6648255 6648255 A T ZBTB48 Missense_Mutation p.Q505H 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-EJ-7125-01 22 19198013 19198013 T C CLTCL1 Silent p.L1024L 0.08 TCGA-EJ-7125-01 22 24982284 24982284 C T FAM211B Missense_Mutation p.R173H 0.38 tolerated(0.53) benign(0.002) TCGA-EJ-7125-01 22 25331314 25331314 C A TMEM211 Nonsense_Mutation p.E126* 0.33 TCGA-EJ-7125-01 2 112620054 112620054 T C ANAPC1 Missense_Mutation p.N392D 0.19 tolerated(0.13) benign(0.075) TCGA-EJ-7125-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EJ-7125-01 2 233322371 233322371 G A ALPI Missense_Mutation p.G249R 0.25 deleterious(0.02) possibly_damaging(0.692) TCGA-EJ-7125-01 3 133342926 133342926 T C TOPBP1 Silent p.V966V 0.34 TCGA-EJ-7125-01 3 168810878 168810878 G A MECOM Missense_Mutation p.S888L 0.37 deleterious(0) probably_damaging(0.997) TCGA-EJ-7125-01 3 77614158 77614158 T A ROBO2 Missense_Mutation p.L595H 0.43 deleterious(0.03) probably_damaging(0.932) TCGA-EJ-7125-01 5 74066519 74066519 A C NSA2 Missense_Mutation p.I136L 0.27 tolerated(0.44) benign(0.001) TCGA-EJ-7125-01 7 30825445 30825445 C T FAM188B Missense_Mutation p.T167M 0.38 tolerated(0.18) benign(0.028) TCGA-EJ-7125-01 9 101785643 101785643 G T COL15A1 Missense_Mutation p.G589V 0.37 tolerated(0.15) probably_damaging(0.988) TCGA-EJ-7218-01 10 105801073 105801073 G A COL17A1 Nonsense_Mutation p.R879* 0.30 TCGA-EJ-7218-01 11 124857123 124857123 A G CCDC15 Missense_Mutation p.D334G 0.11 tolerated(0.09) probably_damaging(0.965) TCGA-EJ-7218-01 11 65314313 65314313 G T LTBP3 Missense_Mutation p.A729D 0.24 deleterious(0.01) benign(0.309) TCGA-EJ-7218-01 11 77412339 77412339 T G RSF1 Missense_Mutation p.K645N 0.09 tolerated_low_confidence(0.09) benign(0.002) TCGA-EJ-7218-01 12 132209998 132209998 G A SFSWAP Missense_Mutation p.V219M 0.15 deleterious(0) probably_damaging(0.996) TCGA-EJ-7218-01 16 20811285 20811285 G A ERI2 Missense_Mutation p.H213Y 0.08 deleterious(0) probably_damaging(0.993) TCGA-EJ-7218-01 17 46805519 46805519 A G HOXB13 Missense_Mutation p.V146A 0.18 deleterious(0) benign(0.075) TCGA-EJ-7218-01 18 67992626 67992626 G T SOCS6 Missense_Mutation p.C241F 0.08 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-EJ-7218-01 19 19313911 19313911 G A NR2C2AP 5'UTR 0.25 TCGA-EJ-7218-01 19 21607304 21607304 A G ZNF493 Missense_Mutation p.I615V 0.06 tolerated(0.6) benign(0.196) TCGA-EJ-7218-01 19 6004297 6004297 T C RFX2 Missense_Mutation p.Q472R 0.07 deleterious(0.01) possibly_damaging(0.821) TCGA-EJ-7218-01 1 115123932 115123932 A C BCAS2 Nonsense_Mutation p.Y58* 0.09 TCGA-EJ-7218-01 1 152324080 152324080 G A FLG2 Missense_Mutation p.S2061L 0.10 possibly_damaging(0.587) TCGA-EJ-7218-01 1 152777721 152777721 G A LCE1C Silent p.S78S 0.11 TCGA-EJ-7218-01 1 197169426 197169426 G A ZBTB41 Nonsense_Mutation p.Q60* 0.11 TCGA-EJ-7218-01 1 38478519 38478519 A C UTP11L Missense_Mutation p.E15D 0.22 tolerated(0.59) benign(0.012) TCGA-EJ-7218-01 20 45131186 45131186 C A ZNF334 Silent p.P264P 0.11 TCGA-EJ-7218-01 20 47863892 47863892 G C ZNFX1 Missense_Mutation p.A1890G 0.24 deleterious(0) probably_damaging(0.997) TCGA-EJ-7218-01 22 19055731 19055731 G A DGCR2 Silent p.T70T 0.29 TCGA-EJ-7218-01 22 50278227 50278227 G A ZBED4 Missense_Mutation p.C306Y 0.04 deleterious(0) probably_damaging(1) TCGA-EJ-7218-01 2 179449074 179449074 T C TTN Missense_Mutation p.Y21735C 0.05 TCGA-EJ-7218-01 2 179615125 179615125 A C TTN Intron 0.08 TCGA-EJ-7218-01 3 179754419 179754419 C T PEX5L 5'UTR 0.06 TCGA-EJ-7218-01 3 189702344 189702344 C A LEPREL1 Missense_Mutation p.E408D 0.06 tolerated(0.5) benign(0.002) TCGA-EJ-7218-01 3 50334946 50334946 A C NAT6 Silent p.T5T 0.17 TCGA-EJ-7218-01 4 110864414 110864414 T G EGF Missense_Mutation p.V111G 0.22 deleterious(0) benign(0.382) TCGA-EJ-7218-01 7 100678485 100678485 C T MUC17 Missense_Mutation p.A1263V 0.22 unknown(0) TCGA-EJ-7218-01 7 151127216 151127216 G C CRYGN Missense_Mutation p.S156C 0.14 deleterious_low_confidence(0) benign(0.162) TCGA-EJ-7218-01 7 21826345 21826345 A G DNAH11 Missense_Mutation p.K3241R 0.13 benign(0.149) TCGA-EJ-7218-01 7 36910037 36910037 G A ELMO1 Silent p.C622C 0.07 TCGA-EJ-7218-01 8 20110914 20110914 C T LZTS1 Silent p.R176R 0.14 TCGA-EJ-7218-01 9 109685642 109685642 A T ZNF462 5'UTR 0.09 TCGA-EJ-7218-01 9 27950458 27950458 C A LINGO2 Missense_Mutation p.S71I 0.10 tolerated(0.48) benign(0.003) TCGA-EJ-7218-01 X 125685212 125685212 G A DCAF12L1 Silent p.G460G 0.08 TCGA-EJ-7218-01 X 128927061 128927061 C A SASH3 Missense_Mutation p.P300T 0.08 deleterious(0.02) probably_damaging(1) TCGA-EJ-7312-01 10 121259537 121259537 C A RGS10 3'UTR 0.35 TCGA-EJ-7312-01 10 61967816 61967816 G A ANK3 Missense_Mutation p.A391V 0.06 possibly_damaging(0.731) TCGA-EJ-7312-01 10 73558150 73558150 C T CDH23 Missense_Mutation p.T50M 0.13 deleterious(0.04) probably_damaging(0.982) TCGA-EJ-7312-01 11 44076793 44076793 C A ACCSL Missense_Mutation p.S364Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-EJ-7312-01 11 6007581 6007581 G T OR52L1 Missense_Mutation p.H194N 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-EJ-7312-01 11 83195218 83195218 G A DLG2 Silent p.F749F 0.20 TCGA-EJ-7312-01 12 1988172 1988172 C T CACNA2D4 Missense_Mutation p.G532S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-EJ-7312-01 12 78362364 78362364 C T NAV3 Nonsense_Mutation p.Q185* 0.27 TCGA-EJ-7312-01 12 8289395 8289395 C T CLEC4A Silent p.F154F 0.40 TCGA-EJ-7312-01 13 24852919 24852919 A T SPATA13 Intron 0.50 TCGA-EJ-7312-01 13 47266692 47266692 A G LRCH1 Missense_Mutation p.S346G 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-EJ-7312-01 13 74269718 74269718 C A KLF12 Missense_Mutation p.G373V 0.30 deleterious(0) probably_damaging(1) TCGA-EJ-7312-01 17 67040650 67040650 A C ABCA9 Silent p.A187A 0.25 TCGA-EJ-7312-01 19 59059081 59059082 - T TRIM28 Splice_Site p.X280_splice 0.33 TCGA-EJ-7312-01 1 111494145 111494145 G T LRIF1 Missense_Mutation p.T454N 0.31 tolerated(0.15) benign(0.032) TCGA-EJ-7312-01 20 33033194 33033194 T G ITCH Nonsense_Mutation p.Y397* 0.50 TCGA-EJ-7312-01 20 33514747 33514747 C T ACSS2 Silent p.T670T 0.47 TCGA-EJ-7312-01 21 47851559 47851559 A G PCNT Silent p.S2727S 0.05 TCGA-EJ-7312-01 2 28821556 28821556 C T PLB1 Silent p.Y801Y 0.04 TCGA-EJ-7312-01 3 112255367 112255367 T C ATG3 Missense_Mutation p.H250R 0.32 deleterious(0) probably_damaging(0.994) TCGA-EJ-7312-01 3 121416568 121416568 C A GOLGB1 Missense_Mutation p.K934N 0.24 possibly_damaging(0.723) TCGA-EJ-7312-01 3 36484942 36484942 C T STAC Silent p.S66S 0.38 TCGA-EJ-7312-01 3 50251640 50251640 C T SLC38A3 RNA 0.18 TCGA-EJ-7312-01 5 140242899 140242899 T C AC005609.1 Missense_Mutation p.D26G 0.30 deleterious_low_confidence(0) possibly_damaging(0.728) TCGA-EJ-7312-01 5 140589269 140589269 G A PCDHB12 Missense_Mutation p.V264I 0.35 tolerated_low_confidence(0.05) benign(0.258) TCGA-EJ-7312-01 6 152804261 152804261 C T SYNE1 Missense_Mutation p.E437K 0.33 probably_damaging(0.971) TCGA-EJ-7312-01 6 42655951 42655951 G A UBR2 Intron 0.18 TCGA-EJ-7312-01 7 114269988 114269988 G A FOXP2 Silent p.Q200Q 0.06 TCGA-EJ-7312-01 7 142162076 142162076 A C TRBV6-6 Missense_Mutation p.Y67D 0.35 deleterious(0) probably_damaging(0.984) TCGA-EJ-7312-01 7 47384421 47384421 C T TNS3 Missense_Mutation p.R861H 0.24 tolerated(0.35) benign(0.002) TCGA-EJ-7312-01 8 139833397 139833397 G A COL22A1 Silent p.Y409Y 0.37 TCGA-EJ-7312-01 8 145058577 145058577 C A PARP10 Missense_Mutation p.C494F 0.06 deleterious(0) probably_damaging(0.979) TCGA-EJ-7312-01 8 3267090 3267090 G A CSMD1 Silent p.P533P 0.20 TCGA-EJ-7312-01 X 104464292 104464292 C T TEX13A Missense_Mutation p.E196K 0.79 tolerated(0.78) benign(0) TCGA-EJ-7314-01 10 115804993 115804993 G A ADRB1 Missense_Mutation p.A368T 0.10 deleterious(0.04) probably_damaging(0.964) TCGA-EJ-7314-01 10 118897516 118897516 C A VAX1 Missense_Mutation p.A18S 0.08 tolerated_low_confidence(0.09) unknown(0) TCGA-EJ-7314-01 10 25226288 25226288 C T PRTFDC1 Missense_Mutation p.R55Q 0.05 deleterious(0.05) benign(0.402) TCGA-EJ-7314-01 10 64967187 64967187 T G JMJD1C Silent p.S1414S 0.09 TCGA-EJ-7314-01 11 60164141 60164141 T C MS4A14 Silent p.P30P 0.09 TCGA-EJ-7314-01 12 49391533 49391533 C T DDN Missense_Mutation p.E376K 0.24 deleterious_low_confidence(0.01) benign(0.011) TCGA-EJ-7314-01 13 25672260 25672260 T C PABPC3 3'UTR 0.14 TCGA-EJ-7314-01 15 43507486 43507486 G T EPB42 Missense_Mutation p.F109L 0.10 tolerated(0.08) benign(0.159) TCGA-EJ-7314-01 16 1370473 1370473 C T UBE2I Missense_Mutation p.P123L 0.06 deleterious(0) probably_damaging(0.979) TCGA-EJ-7314-01 17 40821536 40821536 T A PLEKHH3 Missense_Mutation p.Y706F 0.09 deleterious(0.01) probably_damaging(0.956) TCGA-EJ-7314-01 17 42092331 42092331 G A TMEM101 5'UTR 0.37 TCGA-EJ-7314-01 17 74729679 74729679 G A METTL23 Missense_Mutation p.A162T 0.31 tolerated(0.08) probably_damaging(1) TCGA-EJ-7314-01 19 5455562 5455562 G A ZNRF4 Silent p.A20A 0.09 TCGA-EJ-7314-01 19 58982449 58982449 C T ZNF324 Missense_Mutation p.P197L 0.06 deleterious(0.03) benign(0.013) TCGA-EJ-7314-01 19 7682984 7682984 G A CAMSAP3 3'UTR 0.27 TCGA-EJ-7314-01 1 148004650 148004650 T C NBPF14 Silent p.E894E 0.20 TCGA-EJ-7314-01 1 159275921 159275921 C A FCER1A Missense_Mutation p.H159N 0.22 tolerated(0.23) benign(0.022) TCGA-EJ-7314-01 1 177930014 177930014 C T SEC16B Missense_Mutation p.S283N 0.11 tolerated(0.08) benign(0.062) TCGA-EJ-7314-01 1 229771856 229771856 C T URB2 Missense_Mutation p.S499F 0.25 tolerated(0.6) benign(0.121) TCGA-EJ-7314-01 1 86488275 86488275 C A COL24A1 Splice_Site p.X717_splice 0.06 TCGA-EJ-7314-01 20 42747223 42747223 C A JPH2 Missense_Mutation p.A404S 0.05 deleterious(0.04) probably_damaging(0.916) TCGA-EJ-7314-01 21 47692564 47692565 GT - MCM3AP Frame_Shift_Del p.D792Afs*40 0.26 TCGA-EJ-7314-01 22 21133990 21133990 C A SERPIND1 Missense_Mutation p.N130K 0.18 deleterious(0) probably_damaging(1) TCGA-EJ-7314-01 2 113949974 113949974 C T PSD4 Missense_Mutation p.P549L 0.10 tolerated(0.71) benign(0.002) TCGA-EJ-7314-01 2 176001149 176001149 T A ATF2 Missense_Mutation p.N8I 0.08 deleterious_low_confidence(0.01) benign(0.08) TCGA-EJ-7314-01 2 203383680 203383680 G C BMPR2 Missense_Mutation p.E253Q 0.27 tolerated(0.25) benign(0.012) TCGA-EJ-7314-01 3 10417120 10417120 C T ATP2B2 Silent p.S470S 0.12 TCGA-EJ-7314-01 3 53531240 53531240 G C CACNA1D Silent p.P43P 0.07 TCGA-EJ-7314-01 3 58156417 58156417 C T FLNB Silent p.G2610G 0.06 TCGA-EJ-7314-01 4 109784483 109784483 C T COL25A1 Missense_Mutation p.G382R 0.28 deleterious(0) probably_damaging(1) TCGA-EJ-7314-01 4 128726278 128726278 C T HSPA4L Nonsense_Mutation p.R346* 0.27 TCGA-EJ-7314-01 4 56447021 56447021 T C PDCL2 Missense_Mutation p.D62G 0.23 tolerated(0.06) possibly_damaging(0.832) TCGA-EJ-7314-01 4 76573856 76573856 G A G3BP2 Nonsense_Mutation p.R299* 0.10 TCGA-EJ-7314-01 4 95376473 95376473 G A PDLIM5 Missense_Mutation p.A12T 0.10 deleterious(0) possibly_damaging(0.9) TCGA-EJ-7314-01 5 140222810 140222810 G A PCDHA8 Missense_Mutation p.R635H 0.14 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-EJ-7314-01 5 145493811 145493811 A C LARS Missense_Mutation p.V1130G 0.27 tolerated(0.38) benign(0.001) TCGA-EJ-7314-01 5 35910128 35910128 T - CAPSL Frame_Shift_Del p.K122Sfs*2 0.28 TCGA-EJ-7314-01 6 170627925 170627925 C T FAM120B Nonsense_Mutation p.Q483* 0.04 TCGA-EJ-7314-01 6 47846330 47846330 G A PTCHD4 Silent p.S750S 0.26 TCGA-EJ-7314-01 8 100866333 100866333 C T VPS13B Silent p.V3597V 0.11 TCGA-EJ-7314-01 8 82391107 82391107 C - FABP4 Frame_Shift_Del p.R131Kfs*11 0.22 TCGA-EJ-7314-01 8 94935560 94935560 C T PDP1 Missense_Mutation p.H450Y 0.05 tolerated(0.09) probably_damaging(0.995) TCGA-EJ-7314-01 9 95228754 95228754 T - ASPN Frame_Shift_Del p.S163Vfs*11 0.17 TCGA-EJ-7314-01 X 105153579 105153579 G A NRK Missense_Mutation p.R650Q 0.27 tolerated(0.27) benign(0.016) TCGA-EJ-7314-01 X 123839059 123839059 G A TENM1 Silent p.F273F 0.63 TCGA-EJ-7314-01 X 153135593 153135593 G A L1CAM Silent p.G303G 0.26 TCGA-EJ-7314-01 X 64949442 64949442 A C MSN Missense_Mutation p.N112T 0.55 tolerated(0.26) benign(0.046) TCGA-EJ-7315-01 10 63170373 63170373 G A TMEM26 Missense_Mutation p.R272C 0.08 deleterious(0) probably_damaging(1) TCGA-EJ-7315-01 11 7981685 7981685 G A NLRP10 Missense_Mutation p.R492C 0.33 tolerated(0.33) benign(0.001) TCGA-EJ-7315-01 12 115121048 115121048 G A TBX3 5'UTR 0.07 TCGA-EJ-7315-01 12 57397205 57397205 C T ZBTB39 Silent p.T499T 0.17 TCGA-EJ-7315-01 12 57918089 57918089 G T MBD6 Translation_Start_Site p.M1? 0.04 deleterious_low_confidence(0) unknown(0) TCGA-EJ-7315-01 13 25171525 25171525 G T RP11-556N21.1 Intron 0.32 TCGA-EJ-7315-01 14 94464557 94464557 A G LINC00521 RNA 0.10 TCGA-EJ-7315-01 16 27506671 27506671 C T GTF3C1 Silent p.T831T 0.09 TCGA-EJ-7315-01 16 51175105 51175105 A G SALL1 Missense_Mutation p.I343T 0.03 tolerated(0.46) benign(0.001) TCGA-EJ-7315-01 16 67909965 67909965 G A EDC4 Missense_Mutation p.R67Q 0.22 tolerated(0.61) benign(0.005) TCGA-EJ-7315-01 17 38073351 38073351 C T GSDMB Silent p.L73L 0.07 TCGA-EJ-7315-01 17 7574018 7574018 G A TP53 Missense_Mutation p.R337C 0.17 tolerated(0.09) benign(0.344) TCGA-EJ-7315-01 18 48591894 48591894 T A SMAD4 Missense_Mutation p.Y353N 0.36 tolerated(0.13) probably_damaging(1) TCGA-EJ-7315-01 19 10203390 10203390 C T ANGPTL6 Missense_Mutation p.G430S 0.26 deleterious(0) probably_damaging(1) TCGA-EJ-7315-01 1 15987657 15987657 A G RSC1A1 Missense_Mutation p.T432A 0.32 tolerated(0.34) benign(0.019) TCGA-EJ-7315-01 1 237813234 237813234 G A RYR2 Missense_Mutation p.V2524I 0.30 benign(0.352) TCGA-EJ-7315-01 1 44680509 44680509 T G DMAP1 Missense_Mutation p.F111C 0.08 deleterious(0) probably_damaging(0.976) TCGA-EJ-7315-01 22 43578990 43578991 - G TTLL12 Frame_Shift_Ins p.N115Qfs*38 0.33 TCGA-EJ-7315-01 2 212288967 212288967 G A ERBB4 Nonsense_Mutation p.R927* 0.25 TCGA-EJ-7315-01 2 30961160 30961160 C T CAPN13 Splice_Site p.X532_splice 0.08 TCGA-EJ-7315-01 2 32429723 32429723 T C SLC30A6 Missense_Mutation p.Y284H 0.30 deleterious(0.04) benign(0.149) TCGA-EJ-7315-01 2 8874814 8874814 A C KIDINS220 Missense_Mutation p.F1263V 0.42 deleterious(0) probably_damaging(0.998) TCGA-EJ-7315-01 3 114027080 114027080 G A TIGIT 3'UTR 0.14 TCGA-EJ-7315-01 3 140277663 140277663 G A CLSTN2 Missense_Mutation p.A669T 0.25 tolerated(1) benign(0.002) TCGA-EJ-7315-01 3 142840957 142840957 C G CHST2 Silent p.V433V 0.26 TCGA-EJ-7315-01 3 9027173 9027173 G T SRGAP3 3'UTR 0.06 TCGA-EJ-7315-01 5 132426987 132426987 G A HSPA4 Missense_Mutation p.S494N 0.28 tolerated(0.08) benign(0.097) TCGA-EJ-7315-01 6 80626371 80626371 A T ELOVL4 Missense_Mutation p.I300K 0.28 tolerated(0.48) benign(0.014) TCGA-EJ-7315-01 8 110131650 110131650 G T TRHR Missense_Mutation p.C388F 0.18 deleterious_low_confidence(0) benign(0.427) TCGA-EJ-7315-01 9 129458760 129458760 A C LMX1B 3'UTR 0.22 TCGA-EJ-7315-01 X 153881613 153881613 G A CTAG2 Silent p.G59G 0.87 TCGA-EJ-7315-01 X 69479042 69479042 G A P2RY4 Missense_Mutation p.R145C 0.14 tolerated(0.07) benign(0.053) TCGA-EJ-7317-01 10 105900659 105900659 A G WDR96 Missense_Mutation p.Y1458H 0.27 deleterious(0) possibly_damaging(0.838) TCGA-EJ-7317-01 10 55587260 55587260 G C PCDH15 Silent p.P1420P 0.23 TCGA-EJ-7317-01 10 55587261 55587261 G T PCDH15 Missense_Mutation p.P1420H 0.24 deleterious(0) probably_damaging(0.986) TCGA-EJ-7317-01 11 44100335 44100335 G T ACCS Splice_Site p.X278_splice 0.28 TCGA-EJ-7317-01 12 110383093 110383093 G T GIT2 Missense_Mutation p.S568Y 0.33 tolerated(0.74) benign(0.128) TCGA-EJ-7317-01 12 53238345 53238345 T G KRT78 Missense_Mutation p.K307Q 0.24 deleterious(0.02) possibly_damaging(0.772) TCGA-EJ-7317-01 14 39517871 39517871 G T SEC23A Missense_Mutation p.F574L 0.12 tolerated(0.11) benign(0.139) TCGA-EJ-7317-01 16 30522404 30522404 C G ITGAL Missense_Mutation p.N911K 0.10 deleterious(0.01) possibly_damaging(0.908) TCGA-EJ-7317-01 16 734790 734790 G C WDR24 Missense_Mutation p.L773V 0.25 deleterious(0.03) possibly_damaging(0.58) TCGA-EJ-7317-01 16 7703830 7703830 G A RBFOX1 Silent p.P277P 0.08 TCGA-EJ-7317-01 17 43209630 43209630 C T PLCD3 Missense_Mutation p.A50T 0.20 tolerated(0.21) benign(0.024) TCGA-EJ-7317-01 19 4366548 4366548 G A SH3GL1 Missense_Mutation p.A46V 0.09 tolerated(0.15) benign(0.213) TCGA-EJ-7317-01 19 58017987 58017987 A G ZNF773 Missense_Mutation p.H175R 0.32 tolerated(0.11) benign(0.002) TCGA-EJ-7317-01 1 237796915 237796915 G A RYR2 Missense_Mutation p.R2198H 0.26 probably_damaging(1) TCGA-EJ-7317-01 1 43912679 43912679 G A SZT2 Silent p.V2985V 0.07 TCGA-EJ-7317-01 1 44415596 44415596 T G IPO13 Missense_Mutation p.C198G 0.15 tolerated(0.17) benign(0.001) TCGA-EJ-7317-01 1 44442867 44442867 G C ATP6V0B Silent p.G190G 0.22 TCGA-EJ-7317-01 20 43355879 43355879 G A WISP2 Silent p.Q228Q 0.37 TCGA-EJ-7317-01 20 52198352 52198352 C T ZNF217 Silent p.K338K 0.11 TCGA-EJ-7317-01 22 23523995 23523995 A G BCR Missense_Mutation p.Y283C 0.18 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-EJ-7317-01 2 29295352 29295352 C T C2orf71 Silent p.T592T 0.12 TCGA-EJ-7317-01 2 55582770 55582770 G C CCDC88A Missense_Mutation p.L249V 0.40 tolerated(0.05) probably_damaging(0.999) TCGA-EJ-7317-01 2 97530551 97530551 A G SEMA4C Missense_Mutation p.C285R 0.05 deleterious(0) probably_damaging(1) TCGA-EJ-7317-01 3 128696988 128696988 T - KIAA1257 Frame_Shift_Del p.E236Dfs*80 0.09 TCGA-EJ-7317-01 3 172835445 172835445 T C SPATA16 Missense_Mutation p.N26S 0.03 tolerated_low_confidence(0.06) possibly_damaging(0.486) TCGA-EJ-7317-01 3 97618049 97618049 G C CRYBG3 Missense_Mutation p.C690S 0.32 tolerated(0.43) benign(0.088) TCGA-EJ-7317-01 4 104041395 104041395 C T CENPE Silent p.V2413V 0.20 TCGA-EJ-7317-01 4 48551612 48551612 C T FRYL Nonsense_Mutation p.W1554* 0.33 TCGA-EJ-7317-01 4 69973826 69973826 C A UGT2B7 Missense_Mutation p.P366T 0.22 deleterious(0.01) possibly_damaging(0.904) TCGA-EJ-7317-01 5 13735947 13735947 T C DNAH5 Silent p.L3850L 0.04 TCGA-EJ-7317-01 5 137520549 137520549 G A KIF20A Silent p.Q579Q 0.28 TCGA-EJ-7317-01 5 140572701 140572701 A G PCDHB10 Silent p.P192P 0.31 TCGA-EJ-7317-01 5 167420177 167420177 G A TENM2 Silent p.A392A 0.07 TCGA-EJ-7317-01 5 176016426 176016426 C A CDHR2 Missense_Mutation p.T1035N 0.05 tolerated(0.26) benign(0.005) TCGA-EJ-7317-01 5 64872761 64872761 G A PPWD1 Missense_Mutation p.R342Q 0.12 deleterious(0) probably_damaging(0.996) TCGA-EJ-7317-01 5 68470883 68470883 T C CCNB1 Silent p.F295F 0.05 TCGA-EJ-7317-01 5 78293852 78293852 T G DMGDH 3'UTR 0.26 TCGA-EJ-7317-01 6 149262511 149262511 G A UST Missense_Mutation p.G130R 0.28 tolerated(0.23) benign(0.234) TCGA-EJ-7317-01 6 149773804 149773804 G T ZC3H12D Missense_Mutation p.F245L 0.24 deleterious(0) probably_damaging(0.997) TCGA-EJ-7317-01 6 27806651 27806651 T G HIST1H2BN Missense_Mutation p.F71C 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EJ-7317-01 7 142983609 142983609 C T TMEM139 Missense_Mutation p.P113L 0.33 deleterious(0) probably_damaging(0.913) TCGA-EJ-7317-01 7 150417391 150417391 A C GIMAP1 Missense_Mutation p.E100A 0.10 deleterious(0) probably_damaging(0.989) TCGA-EJ-7317-01 8 113249577 113249577 A G CSMD3 Missense_Mutation p.V3490A 0.10 deleterious(0.03) benign(0.023) TCGA-EJ-7317-01 8 17447026 17447026 G A PDGFRL Silent p.E35E 0.09 TCGA-EJ-7317-01 9 32543932 32543932 A C TOPORS Silent p.G197G 0.11 TCGA-EJ-7317-01 X 44969453 44969453 A - KDM6A Frame_Shift_Del p.M1380Wfs*4 0.44 TCGA-EJ-7318-01 10 15590512 15590512 C G ITGA8 Missense_Mutation p.G941A 0.13 deleterious(0.01) benign(0.129) TCGA-EJ-7318-01 10 17362963 17362963 G T ST8SIA6 Missense_Mutation p.Q371K 0.04 tolerated(0.17) benign(0.004) TCGA-EJ-7318-01 10 76729799 76729799 T C KAT6B Missense_Mutation p.S290P 0.13 probably_damaging(0.999) TCGA-EJ-7318-01 11 55587532 55587532 G A OR5D18 Missense_Mutation p.V143M 0.20 tolerated(0.12) benign(0.023) TCGA-EJ-7318-01 12 112605118 112605118 C T HECTD4 Intron 0.26 TCGA-EJ-7318-01 12 43819391 43819391 G T ADAMTS20 Missense_Mutation p.P1404T 0.21 deleterious(0) probably_damaging(1) TCGA-EJ-7318-01 12 70003941 70003941 G A LRRC10 Silent p.N226N 0.23 TCGA-EJ-7318-01 13 26620948 26620948 C T SHISA2 Silent p.A197A 0.07 TCGA-EJ-7318-01 13 45533530 45533530 A C NUFIP1 Missense_Mutation p.I336R 0.34 deleterious(0.02) benign(0.388) TCGA-EJ-7318-01 14 55509920 55509920 G T SOCS4 Missense_Mutation p.G54V 0.25 tolerated(0.05) benign(0) TCGA-EJ-7318-01 15 90774720 90774720 C T CIB1 Missense_Mutation p.R72Q 0.36 deleterious(0.02) possibly_damaging(0.605) TCGA-EJ-7318-01 17 79863597 79863597 C T PCYT2 Silent p.V302V 0.09 TCGA-EJ-7318-01 19 10096993 10096993 T A COL5A3 Nonsense_Mutation p.K784* 0.28 TCGA-EJ-7318-01 19 10398384 10398384 C T ICAM4 Nonsense_Mutation p.Q164* 0.07 TCGA-EJ-7318-01 19 2427323 2427323 C A TIMM13 Splice_Site p.X41_splice 0.07 TCGA-EJ-7318-01 19 39075636 39075636 C T RYR1 Silent p.D4900D 0.16 TCGA-EJ-7318-01 19 4891081 4891081 C T ARRDC5 Missense_Mutation p.V336M 0.19 tolerated_low_confidence(0.19) benign(0.004) TCGA-EJ-7318-01 19 57327049 57327049 C T PEG3 Missense_Mutation p.E921K 0.05 tolerated(0.47) benign(0.024) TCGA-EJ-7318-01 1 114450813 114450813 G A DCLRE1B Missense_Mutation p.G180R 0.23 deleterious(0) probably_damaging(0.999) TCGA-EJ-7318-01 1 158631121 158631121 C T SPTA1 Missense_Mutation p.R848H 0.28 tolerated(0.12) benign(0.016) TCGA-EJ-7318-01 1 29527049 29527049 G A MECR Missense_Mutation p.T270I 0.12 deleterious(0.04) possibly_damaging(0.687) TCGA-EJ-7318-01 1 33797885 33797885 A C PHC2 Missense_Mutation p.Y627D 0.04 tolerated(0.11) benign(0.076) TCGA-EJ-7318-01 1 74819697 74819697 G A FPGT-TNNI3K Missense_Mutation p.R468H 0.07 tolerated(0.18) probably_damaging(0.997) TCGA-EJ-7318-01 2 228883536 228883536 A G SPHKAP Silent p.H678H 0.37 TCGA-EJ-7318-01 2 40342400 40342400 C - SLC8A1 Frame_Shift_Del p.G972Afs*19 0.31 TCGA-EJ-7318-01 2 80530262 80530262 T C LRRTM1 Missense_Mutation p.H228R 0.33 deleterious(0.02) probably_damaging(0.977) TCGA-EJ-7318-01 3 135722332 135722332 C T PPP2R3A Silent p.I664I 0.21 TCGA-EJ-7318-01 3 53783437 53783437 G A CACNA1D Missense_Mutation p.V1173I 0.04 tolerated(0.22) probably_damaging(0.994) TCGA-EJ-7318-01 3 89468541 89468541 G T EPHA3 Splice_Site p.X692_splice 0.30 TCGA-EJ-7318-01 4 15964674 15964674 C T FGFBP2 Missense_Mutation p.G27R 0.24 tolerated(0.91) benign(0.033) TCGA-EJ-7318-01 4 57181022 57181022 G A KIAA1211 Missense_Mutation p.E452K 0.17 tolerated(0.34) unknown(0) TCGA-EJ-7318-01 5 140559000 140559000 G A PCDHB8 Missense_Mutation p.R462H 0.06 tolerated_low_confidence(0.08) benign(0.012) TCGA-EJ-7318-01 5 152870392 152870392 G A GRIA1 5'Flank 0.18 TCGA-EJ-7318-01 5 153174234 153174234 A T GRIA1 Missense_Mutation p.K785I 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-7318-01 7 100281226 100281226 T C GIGYF1 Missense_Mutation p.I667V 0.07 tolerated(0.23) unknown(0) TCGA-EJ-7318-01 9 104448995 104448995 A C GRIN3A Missense_Mutation p.V396G 0.05 deleterious(0.02) possibly_damaging(0.548) TCGA-EJ-7318-01 9 131765100 131765100 C T NUP188 Missense_Mutation p.P1381L 0.21 tolerated(0.76) benign(0.021) TCGA-EJ-7318-01 X 154507271 154507271 C T CLIC2 Missense_Mutation p.R222H 0.05 deleterious(0.02) benign(0.383) TCGA-EJ-7318-01 X 99662943 99662943 C T PCDH19 Missense_Mutation p.R218H 0.38 tolerated(0.05) benign(0.01) TCGA-EJ-7321-01 10 16955876 16955876 C - CUBN Frame_Shift_Del p.I2490Sfs*3 0.15 TCGA-EJ-7321-01 11 130343428 130343428 C T ADAMTS15 Silent p.C855C 0.38 TCGA-EJ-7321-01 11 55587340 55587340 G A OR5D18 Missense_Mutation p.A79T 0.07 tolerated(1) benign(0.005) TCGA-EJ-7321-01 11 6048918 6048918 G C OR56A1 Missense_Mutation p.A6G 0.32 tolerated(0.08) benign(0.027) TCGA-EJ-7321-01 11 60640728 60640728 C T ZP1 Silent p.P402P 0.15 TCGA-EJ-7321-01 11 71153385 71153385 C A DHCR7 Silent p.T112T 0.18 TCGA-EJ-7321-01 13 53624777 53624777 C G OLFM4 Missense_Mutation p.D468E 0.37 deleterious(0.02) benign(0.012) TCGA-EJ-7321-01 16 67337079 67337089 CGATGAGGGCC - KCTD19 Frame_Shift_Del p.A202Vfs*23 0.18 TCGA-EJ-7321-01 16 67685160 67685160 G A RLTPR Missense_Mutation p.G752D 0.07 tolerated(0.28) benign(0.012) TCGA-EJ-7321-01 16 68269658 68269658 G A ESRP2 Missense_Mutation p.T69M 0.11 tolerated(0.1) possibly_damaging(0.857) TCGA-EJ-7321-01 17 47394309 47394309 A G ZNF652 Missense_Mutation p.L260P 0.14 deleterious(0) probably_damaging(0.998) TCGA-EJ-7321-01 17 60758158 60758158 C T MRC2 Intron 0.10 TCGA-EJ-7321-01 19 17081776 17081776 G T CPAMD8 Missense_Mutation p.T760N 0.28 deleterious(0.03) probably_damaging(0.962) TCGA-EJ-7321-01 19 3730081 3730081 G A TJP3 Missense_Mutation p.A81T 0.04 tolerated(0.27) benign(0.002) TCGA-EJ-7321-01 19 6731293 6731293 C A GPR108 Missense_Mutation p.V451F 0.16 deleterious(0) possibly_damaging(0.497) TCGA-EJ-7321-01 19 7673045 7673045 C T CAMSAP3 Missense_Mutation p.R246C 0.08 tolerated(0.16) benign(0.013) TCGA-EJ-7321-01 1 103444627 103444627 G A COL11A1 Missense_Mutation p.R882C 0.06 unknown(0) TCGA-EJ-7321-01 1 109840068 109840068 C T MYBPHL Missense_Mutation p.A136T 0.10 deleterious(0.02) benign(0.346) TCGA-EJ-7321-01 1 110607211 110607211 G A ALX3 Nonsense_Mutation p.Q198* 0.07 TCGA-EJ-7321-01 1 66081866 66081866 T C LEPR Missense_Mutation p.V724A 0.06 tolerated(0.56) benign(0.003) TCGA-EJ-7321-01 20 7875791 7875791 C T HAO1 Missense_Mutation p.V268M 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-EJ-7321-01 22 21345971 21345971 G A LZTR1 Silent p.Q282Q 0.17 TCGA-EJ-7321-01 22 45595785 45595785 G A KIAA0930 Silent p.S333S 0.09 TCGA-EJ-7321-01 2 168105325 168105325 A T XIRP2 Missense_Mutation p.T2475S 0.09 benign(0.017) TCGA-EJ-7321-01 2 33488411 33488411 G A LTBP1 Missense_Mutation p.A857T 0.12 tolerated(0.26) benign(0.011) TCGA-EJ-7321-01 2 38546101 38546101 C T ATL2 Missense_Mutation p.G142S 0.09 deleterious(0) probably_damaging(0.983) TCGA-EJ-7321-01 2 96795627 96795627 C T ASTL Silent p.S270S 0.05 TCGA-EJ-7321-01 3 33414823 33414823 C A FBXL2 Missense_Mutation p.T144K 0.06 deleterious(0.01) possibly_damaging(0.616) TCGA-EJ-7321-01 3 44943340 44943340 C T TGM4 Silent p.H296H 0.20 TCGA-EJ-7321-01 3 52472026 52472026 C A SEMA3G Missense_Mutation p.G567C 0.19 deleterious(0) probably_damaging(0.996) TCGA-EJ-7321-01 4 144449073 144449073 C T SMARCA5 Missense_Mutation p.T285I 0.31 deleterious(0.02) probably_damaging(0.919) TCGA-EJ-7321-01 4 169227602 169227602 T C DDX60 Silent p.Q178Q 0.10 TCGA-EJ-7321-01 5 140725804 140725804 C T PCDHGA3 Missense_Mutation p.T735M 0.05 tolerated_low_confidence(0.24) benign(0.004) TCGA-EJ-7321-01 5 33630978 33630978 C T ADAMTS12 Silent p.Q643Q 0.13 TCGA-EJ-7321-01 6 29555896 29555896 T G OR2H2 Missense_Mutation p.F59V 0.12 deleterious(0) possibly_damaging(0.678) TCGA-EJ-7321-01 7 100681323 100681323 G A MUC17 Missense_Mutation p.S2209N 0.11 unknown(0) TCGA-EJ-7321-01 8 38260146 38260146 G A LETM2 Missense_Mutation p.R316Q 0.06 tolerated(0.09) benign(0.192) TCGA-EJ-7321-01 8 38880724 38880724 G A ADAM9 Nonsense_Mutation p.W265* 0.04 TCGA-EJ-7321-01 9 116968050 116968050 A G COL27A1 Silent p.G727G 0.31 TCGA-EJ-7321-01 X 101972035 101972035 T G GPRASP2 Silent p.S746S 0.08 TCGA-EJ-7321-01 X 34150170 34150170 A T FAM47A Missense_Mutation p.F76I 0.17 deleterious(0.05) possibly_damaging(0.887) TCGA-EJ-7325-01 10 27412531 27412531 G A YME1L1 Silent p.S406S 0.35 TCGA-EJ-7325-01 11 128844792 128844792 T C ARHGAP32 Missense_Mutation p.N753S 0.34 tolerated(0.16) benign(0.057) TCGA-EJ-7325-01 12 109288095 109288095 G A DAO Silent p.A188A 0.28 TCGA-EJ-7325-01 12 132329952 132329952 G A MMP17 Missense_Mutation p.V388M 0.52 deleterious(0) probably_damaging(0.999) TCGA-EJ-7325-01 13 88328681 88328681 T C SLITRK5 Silent p.S346S 0.42 TCGA-EJ-7325-01 16 2140203 2140203 C T PKD1 Intron 0.34 TCGA-EJ-7325-01 16 28734595 28734595 A G EIF3C Missense_Mutation p.N296S 0.20 tolerated(0.09) benign(0.014) TCGA-EJ-7325-01 17 10315826 10315826 G A MYH8 Missense_Mutation p.A426V 0.04 deleterious(0.02) benign(0.29) TCGA-EJ-7325-01 17 39190675 39190675 G T KRTAP1-3 Nonsense_Mutation p.C133* 0.31 TCGA-EJ-7325-01 17 42458348 42458348 C A ITGA2B Missense_Mutation p.R431M 0.51 tolerated(0.09) benign(0) TCGA-EJ-7325-01 19 53914062 53914062 A T ZNF765 3'UTR 0.56 TCGA-EJ-7325-01 1 152732860 152732860 C T KPRP Missense_Mutation p.P266S 0.36 tolerated(0.23) benign(0.09) TCGA-EJ-7325-01 1 183513586 183513589 CCCC - SMG7 Frame_Shift_Del p.P602Ffs*81 0.37 TCGA-EJ-7325-01 1 204926875 204926875 C T NFASC Silent p.T209T 0.13 TCGA-EJ-7325-01 1 213032441 213032441 T G FLVCR1 Missense_Mutation p.F216C 0.51 deleterious(0.04) possibly_damaging(0.856) TCGA-EJ-7325-01 1 235505067 235505067 C T GGPS1 Silent p.L39L 0.23 TCGA-EJ-7325-01 1 237893572 237893572 C T RYR2 Silent p.V3617V 0.38 TCGA-EJ-7325-01 20 37580707 37580707 G A FAM83D Silent p.T464T 0.42 TCGA-EJ-7325-01 3 10107082 10107082 G A FANCD2 Missense_Mutation p.V725M 0.32 tolerated(0.09) possibly_damaging(0.596) TCGA-EJ-7325-01 3 126748827 126748827 G A PLXNA1 Missense_Mutation p.D1661N 0.42 deleterious(0) probably_damaging(1) TCGA-EJ-7325-01 3 159713456 159713456 T C IL12A 3'UTR 0.12 TCGA-EJ-7325-01 5 112175907 112175907 C G APC Nonsense_Mutation p.S1539* 0.68 TCGA-EJ-7325-01 5 169188601 169188601 A - DOCK2 Frame_Shift_Del p.I842Mfs*24 0.32 TCGA-EJ-7325-01 6 155632395 155632395 C G TFB1M Missense_Mutation p.R71T 0.41 deleterious(0) probably_damaging(1) TCGA-EJ-7325-01 6 162622178 162622178 C T PARK2 Silent p.T173T 0.33 TCGA-EJ-7325-01 6 54806426 54806426 C A FAM83B Missense_Mutation p.A886D 0.46 deleterious(0.02) possibly_damaging(0.776) TCGA-EJ-7325-01 7 143029831 143029831 A C CLCN1 Missense_Mutation p.E422D 0.43 tolerated(0.21) probably_damaging(0.987) TCGA-EJ-7325-01 8 106813675 106813675 G A ZFPM2 Silent p.E455E 0.38 TCGA-EJ-7325-01 8 72967934 72967934 G T TRPA1 Missense_Mutation p.H451N 0.15 deleterious(0) probably_damaging(0.995) TCGA-EJ-7327-01 10 133949433 133949433 G T JAKMIP3 Splice_Site p.X324_splice 0.20 TCGA-EJ-7327-01 10 89717634 89717634 T - PTEN Frame_Shift_Del p.L220Qfs*3 0.16 TCGA-EJ-7327-01 11 117864087 117864087 T C IL10RA Missense_Mutation p.Y167H 0.05 deleterious(0) probably_damaging(1) TCGA-EJ-7327-01 11 7982637 7982637 C T NLRP10 Silent p.S174S 0.18 TCGA-EJ-7327-01 13 19748253 19748253 A T TUBA3C Missense_Mutation p.L368Q 0.22 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-EJ-7327-01 13 29600340 29600340 T A MTUS2 Missense_Mutation p.V512D 0.23 tolerated(0.08) benign(0.046) TCGA-EJ-7327-01 14 38277950 38277950 G A TTC6 Missense_Mutation p.A1490T 0.32 deleterious(0) probably_damaging(0.994) TCGA-EJ-7327-01 16 11363130 11363130 G A TNP2 5'UTR 0.08 TCGA-EJ-7327-01 17 33768685 33768685 T C SLFN13 Missense_Mutation p.I607V 0.18 tolerated(0.38) benign(0.217) TCGA-EJ-7327-01 17 62022975 62022975 G A SCN4A Silent p.G1155G 0.16 TCGA-EJ-7327-01 1 151377502 151377515 TAATGTTGCCATCG - POGZ Frame_Shift_Del p.D1333Lfs*7 0.18 TCGA-EJ-7327-01 1 159035790 159035790 A T AIM2 Silent p.I242I 0.14 TCGA-EJ-7327-01 1 223566906 223566906 G A C1orf65 Missense_Mutation p.R30Q 0.27 tolerated(0.18) benign(0.015) TCGA-EJ-7327-01 20 30193112 30193112 C T ID1 5'UTR 0.33 TCGA-EJ-7327-01 22 30163414 30163414 A G UQCR10 Silent p.K9K 0.16 TCGA-EJ-7327-01 2 9731521 9731522 - TT YWHAQ Frame_Shift_Ins p.Q140Nfs*4 0.24 TCGA-EJ-7327-01 3 194118889 194118889 C T GP5 Silent p.A41A 0.32 TCGA-EJ-7327-01 3 77693942 77693942 C G ROBO2 Missense_Mutation p.T1357S 0.07 deleterious_low_confidence(0.03) benign(0.292) TCGA-EJ-7327-01 4 164247226 164247226 C A NPY1R Missense_Mutation p.V161L 0.32 tolerated(0.93) benign(0.006) TCGA-EJ-7327-01 4 47809012 47809012 G A CORIN Missense_Mutation p.A39V 0.16 tolerated_low_confidence(0.18) benign(0.007) TCGA-EJ-7327-01 4 76417113 76417113 G T RCHY1 Missense_Mutation p.P146T 0.28 deleterious(0) probably_damaging(0.989) TCGA-EJ-7327-01 5 149562382 149562382 G T CDX1 Missense_Mutation p.R166L 0.31 deleterious(0) probably_damaging(0.998) TCGA-EJ-7327-01 5 31983565 31983565 G A PDZD2 Missense_Mutation p.G261S 0.05 deleterious(0.04) benign(0.052) TCGA-EJ-7327-01 6 13206177 13206177 G - PHACTR1 Frame_Shift_Del p.S266Vfs*47 0.28 TCGA-EJ-7327-01 6 27776019 27776019 C T HIST1H2AI Missense_Mutation p.A11V 0.19 tolerated_low_confidence(0.2) unknown(0) TCGA-EJ-7327-01 6 397161 397161 C - IRF4 Frame_Shift_Del p.P183Rfs*14 0.23 TCGA-EJ-7327-01 6 44371735 44371735 A T CDC5L Missense_Mutation p.R243S 0.35 tolerated(0.06) benign(0.074) TCGA-EJ-7327-01 7 2984130 2984130 C T CARD11 Missense_Mutation p.E134K 0.22 deleterious(0) probably_damaging(0.999) TCGA-EJ-7327-01 8 61178528 61178528 G A CA8 Missense_Mutation p.R125C 0.17 deleterious(0.02) benign(0.401) TCGA-EJ-7327-01 9 34997172 34997172 C T DNAJB5 Silent p.L435L 0.38 TCGA-EJ-7327-01 X 10058810 10058810 G A WWC3 Splice_Site p.X126_splice 0.38 TCGA-EJ-7327-01 X 82763400 82763400 C T POU3F4 Missense_Mutation p.A23V 0.14 tolerated_low_confidence(0.11) benign(0.001) TCGA-EJ-7328-01 10 103990274 103990274 T C PITX3 Silent p.V302V 0.10 TCGA-EJ-7328-01 10 43882502 43882502 G A HNRNPF Silent p.G277G 0.24 TCGA-EJ-7328-01 10 44112021 44112021 A G ZNF485 Missense_Mutation p.H177R 0.16 tolerated(0.09) benign(0.001) TCGA-EJ-7328-01 10 71008401 71008401 A G HKDC1 Missense_Mutation p.E496G 0.09 deleterious(0.05) benign(0.235) TCGA-EJ-7328-01 10 91177946 91177946 C T IFIT5 Silent p.A330A 0.16 TCGA-EJ-7328-01 11 4626487 4626487 C T TRIM68 Missense_Mutation p.R83H 0.16 tolerated(0.05) benign(0.028) TCGA-EJ-7328-01 11 47712125 47712125 C T AGBL2 Silent p.T378T 0.14 TCGA-EJ-7328-01 11 55761664 55761664 G A OR5F1 Silent p.A146A 0.10 TCGA-EJ-7328-01 12 2022195 2022195 C T CACNA2D4 Silent p.A140A 0.19 TCGA-EJ-7328-01 13 32972737 32972738 - T BRCA2 Frame_Shift_Ins p.S3364Ifs*4 0.14 TCGA-EJ-7328-01 13 48941653 48941653 C T RB1 Silent p.Y321Y 0.19 TCGA-EJ-7328-01 14 24040525 24040525 C T JPH4 Missense_Mutation p.R472Q 0.15 tolerated(0.09) benign(0.198) TCGA-EJ-7328-01 14 89878584 89878584 C T FOXN3 Silent p.S79S 0.17 TCGA-EJ-7328-01 15 65871953 65871953 C G VWA9 Silent p.L393L 0.10 TCGA-EJ-7328-01 19 13216326 13216326 C T TRMT1 Missense_Mutation p.G560S 0.12 deleterious(0.03) probably_damaging(1) TCGA-EJ-7328-01 19 51297838 51297838 G A ACPT Missense_Mutation p.G329E 0.09 deleterious(0.03) possibly_damaging(0.489) TCGA-EJ-7328-01 19 54756362 54756362 C T LILRB5 Missense_Mutation p.G509S 0.23 tolerated(0.09) benign(0.037) TCGA-EJ-7328-01 19 9082695 9082695 T A MUC16 Silent p.T3040T 0.09 TCGA-EJ-7328-01 1 10719882 10719882 G A CASZ1 Missense_Mutation p.A406V 0.06 deleterious_low_confidence(0.05) benign(0.016) TCGA-EJ-7328-01 1 45270100 45270100 T C PLK3 Missense_Mutation p.Y478H 0.22 deleterious(0) probably_damaging(0.999) TCGA-EJ-7328-01 1 45472380 45472380 A C HECTD3 Missense_Mutation p.V570G 0.12 deleterious(0) possibly_damaging(0.783) TCGA-EJ-7328-01 1 46086625 46086625 G A CCDC17 Missense_Mutation p.L517F 0.19 tolerated(0.15) benign(0.22) TCGA-EJ-7328-01 1 99767329 99767329 T C LPPR4 Missense_Mutation p.L281P 0.08 deleterious(0) probably_damaging(0.992) TCGA-EJ-7328-01 2 128409282 128409282 G A GPR17 Missense_Mutation p.E353K 0.16 tolerated_low_confidence(0.35) benign(0.124) TCGA-EJ-7328-01 2 170053462 170053462 T A LRP2 Missense_Mutation p.E2886V 0.10 benign(0.034) TCGA-EJ-7328-01 2 233759455 233759455 C A NGEF Intron 0.06 TCGA-EJ-7328-01 3 12977469 12977469 C T IQSEC1 Silent p.P363P 0.08 TCGA-EJ-7328-01 3 62317034 62317034 G A C3orf14 Missense_Mutation p.R71K 0.17 tolerated(0.43) benign(0.009) TCGA-EJ-7328-01 4 62679557 62679557 T A LPHN3 Missense_Mutation p.I409N 0.21 tolerated(0.3) benign(0.179) TCGA-EJ-7328-01 4 88584563 88584563 T C DMP1 3'UTR 0.30 TCGA-EJ-7328-01 5 150911164 150911164 G A FAT2 Silent p.R3265R 0.11 TCGA-EJ-7328-01 6 26156596 26156596 T G HIST1H1E 5'UTR 0.18 TCGA-EJ-7328-01 6 31828260 31828260 C T NEU1 Missense_Mutation p.G252S 0.16 tolerated(0.14) possibly_damaging(0.523) TCGA-EJ-7328-01 7 91691589 91691589 C T AKAP9 Silent p.G1922G 0.19 TCGA-EJ-7328-01 8 30210244 30210244 C T TUBBP1 RNA 0.16 TCGA-EJ-7328-01 8 75233375 75233375 C A JPH1 Nonsense_Mutation p.G50* 0.11 TCGA-EJ-7328-01 9 6540103 6540103 T G GLDC Missense_Mutation p.K871N 0.22 deleterious(0) possibly_damaging(0.907) TCGA-EJ-7328-01 X 107396937 107396937 G A ATG4A Missense_Mutation p.V398M 0.07 tolerated_low_confidence(0.14) benign(0.106) TCGA-EJ-7328-01 X 150832695 150832695 C G PASD1 Missense_Mutation p.Q316E 0.32 tolerated(0.24) benign(0.143) TCGA-EJ-7328-01 X 70828895 70828895 T A ACRC Missense_Mutation p.N513K 0.43 unknown(0) TCGA-EJ-7330-01 10 15145358 15145358 G A RPP38 Silent p.K15K 0.16 TCGA-EJ-7330-01 10 27702748 27702748 C T PTCHD3 Silent p.A144A 0.13 TCGA-EJ-7330-01 10 81058166 81058166 C T ZMIZ1 Missense_Mutation p.P499S 0.13 benign(0.001) TCGA-EJ-7330-01 10 97380889 97380889 G A ALDH18A1 Missense_Mutation p.R456C 0.16 deleterious(0) probably_damaging(0.999) TCGA-EJ-7330-01 11 120008138 120008138 G A TRIM29 Missense_Mutation p.P201L 0.16 deleterious(0) probably_damaging(0.999) TCGA-EJ-7330-01 11 1215416 1215416 G A MUC5AC RNA 0.21 TCGA-EJ-7330-01 11 48266787 48266787 C A OR4X2 Missense_Mutation p.S44R 0.10 deleterious(0) probably_damaging(0.998) TCGA-EJ-7330-01 11 67287602 67287602 C T CABP2 Missense_Mutation p.V137M 0.12 deleterious(0) benign(0.34) TCGA-EJ-7330-01 11 77728307 77728307 C G KCTD14 Missense_Mutation p.V34L 0.13 deleterious(0.04) benign(0.176) TCGA-EJ-7330-01 12 52200821 52200821 T G SCN8A Missense_Mutation p.F1851V 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-EJ-7330-01 12 65514270 65514270 T C WIF1 Missense_Mutation p.K72R 0.04 tolerated(0.13) benign(0.004) TCGA-EJ-7330-01 12 67700301 67700301 T C CAND1 Silent p.V951V 0.15 TCGA-EJ-7330-01 13 111088622 111088622 G A COL4A2 Missense_Mutation p.V245I 0.11 benign(0.081) TCGA-EJ-7330-01 13 25255780 25255780 G T ATP12A Missense_Mutation p.K30N 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.561) TCGA-EJ-7330-01 13 48934221 48934221 T C RB1 Missense_Mutation p.F226L 0.18 tolerated(0.2) benign(0.341) TCGA-EJ-7330-01 13 94482577 94482577 T C GPC6 Missense_Mutation p.F164L 0.05 deleterious(0) probably_damaging(0.98) TCGA-EJ-7330-01 14 38061231 38061231 A G FOXA1 Missense_Mutation p.M253T 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-7330-01 15 43815432 43815432 A G MAP1A Silent p.E587E 0.20 TCGA-EJ-7330-01 15 89424631 89424631 G A HAPLN3 Silent p.D150D 0.22 TCGA-EJ-7330-01 16 28597027 28597027 A - CCDC101 Frame_Shift_Del p.E71Rfs*49 0.16 TCGA-EJ-7330-01 16 65005959 65005959 G T CDH11 Missense_Mutation p.H467N 0.10 tolerated(0.34) benign(0.322) TCGA-EJ-7330-01 16 68010634 68010634 C T DPEP3 Missense_Mutation p.G380R 0.12 deleterious(0) probably_damaging(1) TCGA-EJ-7330-01 16 857600 857600 A C PRR25 Missense_Mutation p.L199F 0.09 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-EJ-7330-01 17 38233836 38233836 G A THRA Missense_Mutation p.R66H 0.12 tolerated(0.1) probably_damaging(0.998) TCGA-EJ-7330-01 17 47696424 47696424 G T SPOP Missense_Mutation p.F133L 0.10 tolerated(0.07) probably_damaging(0.992) TCGA-EJ-7330-01 19 10506785 10506785 C G CDC37 Missense_Mutation p.R66T 0.17 tolerated(0.11) benign(0.018) TCGA-EJ-7330-01 19 36333346 36333346 T G NPHS1 Missense_Mutation p.Y814S 0.15 deleterious(0) probably_damaging(0.999) TCGA-EJ-7330-01 19 54185442 54185442 G A MIR520F RNA 0.12 TCGA-EJ-7330-01 1 169953739 169953739 T C KIFAP3 Silent p.V459V 0.12 TCGA-EJ-7330-01 1 8923006 8923006 T C ENO1 Splice_Site p.X393_splice 0.08 TCGA-EJ-7330-01 20 2380266 2380266 C T TGM6 Silent p.G244G 0.07 TCGA-EJ-7330-01 20 55746142 55746142 G A BMP7 Missense_Mutation p.T390M 0.06 tolerated(0.19) probably_damaging(0.96) TCGA-EJ-7330-01 20 861826 861826 C T ANGPT4 Silent p.T313T 0.22 TCGA-EJ-7330-01 2 120932465 120932465 A G EPB41L5 Silent p.L728L 0.16 TCGA-EJ-7330-01 2 196673406 196673406 C T DNAH7 Silent p.L3361L 0.07 TCGA-EJ-7330-01 3 156192555 156192555 G T KCNAB1 Nonsense_Mutation p.E202* 0.09 TCGA-EJ-7330-01 3 51864455 51864455 A T IQCF3 Nonsense_Mutation p.K35* 0.28 TCGA-EJ-7330-01 3 72428400 72428400 A T RYBP Splice_Site p.X200_splice 0.22 TCGA-EJ-7330-01 4 178360790 178360790 T C AGA Missense_Mutation p.I112V 0.12 tolerated(0.07) benign(0.261) TCGA-EJ-7330-01 4 84370065 84370065 A T HELQ Missense_Mutation p.N354K 0.08 deleterious(0) probably_damaging(0.999) TCGA-EJ-7330-01 5 141242917 141242917 C T PCDH1 Silent p.V993V 0.11 TCGA-EJ-7330-01 5 167420049 167420049 C T TENM2 Missense_Mutation p.R350C 0.04 deleterious(0) probably_damaging(0.982) TCGA-EJ-7330-01 6 135787164 135787164 C A AHI1 Missense_Mutation p.E179D 0.13 tolerated(0.62) benign(0) TCGA-EJ-7330-01 6 49665572 49665572 C T CRISP2 Splice_Site p.X172_splice 0.13 TCGA-EJ-7330-01 7 40085626 40085626 T C CDK13 Splice_Site p.X848_splice 0.22 TCGA-EJ-7330-01 7 50607643 50607643 G A DDC Silent p.C95C 0.35 TCGA-EJ-7330-01 7 5427648 5427648 G A TNRC18 Missense_Mutation p.R603C 0.23 probably_damaging(0.948) TCGA-EJ-7330-01 7 64864202 64864202 C T ZNF92 Missense_Mutation p.T392M 0.13 deleterious(0.01) probably_damaging(0.963) TCGA-EJ-7330-01 7 99821642 99821642 C T GATS Missense_Mutation p.V92M 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-EJ-7330-01 8 87645021 87645021 A C CNGB3 Missense_Mutation p.F427V 0.14 deleterious(0) probably_damaging(0.925) TCGA-EJ-7330-01 9 99404081 99404081 T C AAED1 Missense_Mutation p.H214R 0.15 tolerated(0.41) benign(0.007) TCGA-EJ-7331-01 10 123843719 123843719 A T TACC2 Silent p.G568G 0.30 TCGA-EJ-7331-01 10 50118180 50118180 C A LRRC18 3'UTR 0.38 TCGA-EJ-7331-01 11 82877716 82877716 T A PCF11 Missense_Mutation p.S593T 0.25 tolerated(0.07) benign(0.218) TCGA-EJ-7331-01 12 12397551 12397551 G T LRP6 Silent p.R32R 0.20 TCGA-EJ-7331-01 14 24843529 24843529 C A NFATC4 Intron 0.14 TCGA-EJ-7331-01 17 40175835 40175835 A G NKIRAS2 Missense_Mutation p.K167R 0.06 tolerated(0.4) benign(0.4) TCGA-EJ-7331-01 17 65942002 65942002 C T BPTF Missense_Mutation p.S2393L 0.05 possibly_damaging(0.6) TCGA-EJ-7331-01 17 74396560 74396560 G A UBE2O Silent p.S322S 0.16 TCGA-EJ-7331-01 18 43497668 43497668 T C EPG5 Missense_Mutation p.Q1072R 0.26 tolerated(0.14) possibly_damaging(0.888) TCGA-EJ-7331-01 18 50432611 50432611 C A DCC Missense_Mutation p.P204T 0.13 tolerated(0.36) benign(0.002) TCGA-EJ-7331-01 19 18277058 18277058 G A PIK3R2 Missense_Mutation p.S502N 0.05 deleterious(0) possibly_damaging(0.728) TCGA-EJ-7331-01 19 6750305 6750305 G A TRIP10 Silent p.A410A 0.17 TCGA-EJ-7331-01 19 9868372 9868372 G A ZNF846 Missense_Mutation p.R461C 0.15 tolerated(0.19) benign(0) TCGA-EJ-7331-01 1 10523170 10523170 G A DFFA Missense_Mutation p.T243I 0.06 tolerated(0.11) benign(0.022) TCGA-EJ-7331-01 1 16265833 16265834 GA - SPEN Frame_Shift_Del p.H3638Pfs*7 0.18 TCGA-EJ-7331-01 20 39991280 39991280 C T EMILIN3 Missense_Mutation p.R310Q 0.12 tolerated(0.63) benign(0.003) TCGA-EJ-7331-01 22 44581708 44581708 C - PARVG Frame_Shift_Del p.P34Hfs*17 0.15 TCGA-EJ-7331-01 2 167089856 167089856 T A SCN9A Silent p.G1295G 0.33 TCGA-EJ-7331-01 2 26950776 26950776 C T KCNK3 Silent p.A175A 0.14 TCGA-EJ-7331-01 3 183667559 183667559 C T ABCC5 Missense_Mutation p.G1070E 0.24 tolerated(0.73) benign(0.002) TCGA-EJ-7331-01 5 180057599 180057599 C T FLT4 Missense_Mutation p.R119H 0.20 tolerated(0.14) benign(0.052) TCGA-EJ-7331-01 6 134212927 134212927 C G TCF21 Missense_Mutation p.T176S 0.09 tolerated_low_confidence(0.08) benign(0.016) TCGA-EJ-7331-01 6 28472064 28472064 C T GPX6 3'UTR 0.25 TCGA-EJ-7331-01 7 18687446 18687446 G A HDAC9 Silent p.T358T 0.26 TCGA-EJ-7331-01 7 95705500 95705500 T C DYNC1I1 Silent p.N564N 0.33 TCGA-EJ-7331-01 8 39525629 39525629 G T ADAM18 Missense_Mutation p.G480V 0.20 tolerated(0.19) probably_damaging(1) TCGA-EJ-7331-01 8 39525630 39525630 C T ADAM18 Silent p.G480G 0.21 TCGA-EJ-7331-01 8 73849007 73849007 G A KCNB2 Missense_Mutation p.G473R 0.20 tolerated(0.08) benign(0.244) TCGA-EJ-7331-01 9 140174262 140174262 G A TOR4A Missense_Mutation p.C374Y 0.14 deleterious(0) probably_damaging(1) TCGA-EJ-7331-01 9 95477650 95477650 G C BICD2 Missense_Mutation p.A785G 0.40 deleterious(0) probably_damaging(1) TCGA-EJ-7331-01 X 29972719 29972719 C T IL1RAPL1 Missense_Mutation p.R428C 0.50 deleterious(0) possibly_damaging(0.828) TCGA-EJ-7331-01 X 44969495 44969495 G A KDM6A Splice_Site p.X1392_splice 0.46 TCGA-EJ-7331-01 X 48973489 48973489 G A GPKOW Missense_Mutation p.R270W 0.27 deleterious(0) probably_damaging(0.998) TCGA-EJ-7781-01 10 134622066 134622066 C G TTC40 Silent p.L2669L 0.16 TCGA-EJ-7781-01 10 31810040 31810040 T A ZEB1 Missense_Mutation p.L594M 0.08 tolerated(0.44) probably_damaging(0.984) TCGA-EJ-7781-01 10 323440 323440 A G DIP2C Missense_Mutation p.V1499A 0.10 deleterious(0) probably_damaging(0.956) TCGA-EJ-7781-01 10 48389905 48389905 C T RBP3 Missense_Mutation p.A325T 0.10 tolerated(0.12) possibly_damaging(0.783) TCGA-EJ-7781-01 10 75673797 75673797 A G PLAU Missense_Mutation p.N247S 0.08 tolerated(0.75) benign(0) TCGA-EJ-7781-01 11 134181019 134181019 G A GLB1L3 Silent p.P414P 0.06 TCGA-EJ-7781-01 11 26743040 26743040 G T SLC5A12 Silent p.V74V 0.09 TCGA-EJ-7781-01 11 4411307 4411307 G A TRIM21 Silent p.C111C 0.07 TCGA-EJ-7781-01 11 48161138 48161138 G A PTPRJ Silent p.E751E 0.09 TCGA-EJ-7781-01 11 5289795 5289795 A T HBE1 Silent p.A116A 0.12 TCGA-EJ-7781-01 11 55798549 55798549 T A OR5AS1 Missense_Mutation p.F219I 0.07 tolerated(0.7) benign(0.011) TCGA-EJ-7781-01 11 58919681 58919681 A G FAM111A Silent p.E180E 0.14 TCGA-EJ-7781-01 12 104107521 104107521 C T STAB2 Silent p.Y1504Y 0.09 TCGA-EJ-7781-01 12 109017024 109017025 - G SELPLG Frame_Shift_Ins p.V370Rfs*3 0.12 TCGA-EJ-7781-01 13 28877423 28877423 C T FLT1 Missense_Mutation p.V1300I 0.06 tolerated(0.93) benign(0) TCGA-EJ-7781-01 14 106573439 106573439 T A IGHV3-11 Missense_Mutation p.S49C 0.13 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-EJ-7781-01 14 21624148 21624148 T C OR5AU1 Missense_Mutation p.I13V 0.07 tolerated_low_confidence(1) benign(0) TCGA-EJ-7781-01 14 24618082 24618082 C A RNF31 Missense_Mutation p.P210T 0.08 tolerated(0.24) benign(0.002) TCGA-EJ-7781-01 14 63671716 63671716 C T RHOJ Silent p.N43N 0.13 TCGA-EJ-7781-01 14 65246524 65246524 C T SPTB Silent p.L1464L 0.04 TCGA-EJ-7781-01 15 91040570 91040570 C T IQGAP1 Nonsense_Mutation p.Q1620* 0.32 TCGA-EJ-7781-01 16 2162937 2162937 C T PKD1 Missense_Mutation p.V1005I 0.07 benign(0.11) TCGA-EJ-7781-01 17 4805862 4805862 G A C17orf107 3'UTR 0.11 TCGA-EJ-7781-01 17 63553974 63553974 C G AXIN2 Silent p.L255L 0.05 TCGA-EJ-7781-01 17 74928777 74928777 G A MGAT5B Missense_Mutation p.E459K 0.06 tolerated(0.39) benign(0.008) TCGA-EJ-7781-01 17 7576890 7576890 T - TP53 Frame_Shift_Del p.K319Rfs*26 0.28 TCGA-EJ-7781-01 19 11304613 11304613 T C KANK2 Missense_Mutation p.K48R 0.23 deleterious(0) probably_damaging(0.996) TCGA-EJ-7781-01 19 12541355 12541355 T A ZNF443 Missense_Mutation p.Y544F 0.12 tolerated(0.71) benign(0) TCGA-EJ-7781-01 19 53079252 53079252 T C ZNF701 Silent p.N106N 0.21 TCGA-EJ-7781-01 19 7682254 7682254 T C CAMSAP3 Silent p.P1112P 0.05 TCGA-EJ-7781-01 1 12921405 12921405 G A PRAMEF2 Missense_Mutation p.R399H 0.12 tolerated(0.31) benign(0.001) TCGA-EJ-7781-01 1 152329230 152329230 G C FLG2 Missense_Mutation p.N344K 0.07 unknown(0) TCGA-EJ-7781-01 1 173593981 173593981 C G ANKRD45 Missense_Mutation p.Q225H 0.16 deleterious(0) probably_damaging(0.994) TCGA-EJ-7781-01 1 1957026 1957026 G A GABRD Missense_Mutation p.E107K 0.09 tolerated(0.95) benign(0.079) TCGA-EJ-7781-01 1 33354639 33354639 A G HPCA Missense_Mutation p.E47G 0.10 tolerated(0.21) possibly_damaging(0.756) TCGA-EJ-7781-01 20 17436993 17436993 G A PCSK2 Missense_Mutation p.A368T 0.07 deleterious(0.03) possibly_damaging(0.881) TCGA-EJ-7781-01 20 3214874 3214874 G A SLC4A11 Silent p.N169N 0.15 TCGA-EJ-7781-01 20 5897548 5897548 G A CHGB Missense_Mutation p.R58H 0.17 deleterious(0) probably_damaging(1) TCGA-EJ-7781-01 22 28196380 28196380 G A MN1 Missense_Mutation p.A51V 0.06 possibly_damaging(0.558) TCGA-EJ-7781-01 22 30866203 30866203 C T SEC14L3 Missense_Mutation p.R57H 0.08 deleterious(0.02) benign(0.003) TCGA-EJ-7781-01 22 41735080 41735080 T G ZC3H7B Missense_Mutation p.L234R 0.32 tolerated(0.15) benign(0.391) TCGA-EJ-7781-01 2 128703100 128703100 T C SAP130 Missense_Mutation p.N970S 0.05 tolerated_low_confidence(0.15) possibly_damaging(0.897) TCGA-EJ-7781-01 2 136536538 136536540 TAA - UBXN4 In_Frame_Del p.N359del 0.13 TCGA-EJ-7781-01 2 137814399 137814399 T G THSD7B Silent p.S183S 0.05 TCGA-EJ-7781-01 2 166859166 166859166 T C SCN1A Missense_Mutation p.N1367S 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-EJ-7781-01 2 166900370 166900370 G A SCN1A Missense_Mutation p.R618C 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-EJ-7781-01 2 179605764 179605764 C G TTN Missense_Mutation p.D4066H 0.26 TCGA-EJ-7781-01 2 86459814 86459814 G A REEP1 Missense_Mutation p.R184W 0.14 deleterious(0) possibly_damaging(0.876) TCGA-EJ-7781-01 2 86847496 86847496 T C RNF103-CHMP3 Missense_Mutation p.Y30C 0.13 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-EJ-7781-01 3 127642852 127642852 C T KBTBD12 Silent p.Y316Y 0.07 TCGA-EJ-7781-01 4 56744213 56744213 A G EXOC1 Missense_Mutation p.K402R 0.27 tolerated(0.45) benign(0.005) TCGA-EJ-7781-01 5 140202764 140202764 G A PCDHA5 Silent p.P468P 0.16 TCGA-EJ-7781-01 5 140214180 140214180 G A PCDHA7 Missense_Mutation p.R71H 0.06 tolerated_low_confidence(0.25) benign(0.022) TCGA-EJ-7781-01 5 140720528 140720528 G A PCDHGA2 Missense_Mutation p.V664M 0.09 deleterious_low_confidence(0.03) possibly_damaging(0.532) TCGA-EJ-7781-01 5 147796680 147796680 A C FBXO38 Missense_Mutation p.N511H 0.27 tolerated_low_confidence(0.25) probably_damaging(0.996) TCGA-EJ-7781-01 5 32091103 32091104 - C PDZD2 Frame_Shift_Ins p.R2519Qfs*29 0.08 TCGA-EJ-7781-01 6 24596291 24596291 G T KIAA0319 Missense_Mutation p.A204E 0.07 tolerated(0.76) benign(0.005) TCGA-EJ-7781-01 6 51612955 51612955 A C PKHD1 Missense_Mutation p.F3153L 0.07 tolerated(0.16) benign(0.232) TCGA-EJ-7781-01 6 54805411 54805411 C A FAM83B Missense_Mutation p.P548T 0.07 deleterious(0.02) possibly_damaging(0.892) TCGA-EJ-7781-01 7 23207656 23207656 C G KLHL7 Missense_Mutation p.T460R 0.10 tolerated(1) benign(0.01) TCGA-EJ-7781-01 7 55755596 55755596 G T RNU6-389P 3'Flank 0.10 TCGA-EJ-7781-01 8 131916039 131916039 A T ADCY8 Missense_Mutation p.D630E 0.11 tolerated(0.59) benign(0.017) TCGA-EJ-7781-01 8 37601885 37601885 G A ERLIN2 Missense_Mutation p.M83I 0.06 tolerated(0.08) possibly_damaging(0.785) TCGA-EJ-7781-01 8 37602094 37602094 G A ERLIN2 Missense_Mutation p.D102N 0.10 deleterious(0.05) benign(0.274) TCGA-EJ-7781-01 8 37602102 37602102 G A ERLIN2 Silent p.V104V 0.08 TCGA-EJ-7781-01 8 37611003 37611003 G C ERLIN2 Missense_Mutation p.D259H 0.05 deleterious(0) probably_damaging(0.995) TCGA-EJ-7781-01 8 67578194 67578195 - A VCPIP1 Frame_Shift_Ins p.G334Wfs*19 0.08 TCGA-EJ-7781-01 9 139401765 139401765 C T NOTCH1 Missense_Mutation p.G1212D 0.06 deleterious(0) probably_damaging(0.995) TCGA-EJ-7781-01 9 90261436 90261436 C G DAPK1 Missense_Mutation p.L398V 0.19 deleterious(0.01) possibly_damaging(0.559) TCGA-EJ-7781-01 X 151124292 151124292 C G GABRE Missense_Mutation p.R275S 0.20 deleterious(0) probably_damaging(0.987) TCGA-EJ-7781-01 X 154305487 154305487 T - BRCC3 Frame_Shift_Del p.L80Yfs*11 0.35 TCGA-EJ-7781-01 X 17750102 17750102 A G NHS Missense_Mutation p.T1471A 0.14 tolerated(0.29) benign(0.005) TCGA-EJ-7781-01 X 67937307 67937307 G A STARD8 Missense_Mutation p.R184Q 0.24 tolerated(0.81) benign(0.002) TCGA-EJ-7782-01 10 101995439 101995439 G T CWF19L1 Missense_Mutation p.P486H 0.18 deleterious(0) probably_damaging(0.992) TCGA-EJ-7782-01 10 102737391 102737391 G A SEMA4G Silent p.T113T 0.34 TCGA-EJ-7782-01 10 103867967 103867967 G A LDB1 Silent p.D373D 0.07 TCGA-EJ-7782-01 10 11505706 11505706 C T USP6NL Silent p.A424A 0.22 TCGA-EJ-7782-01 10 119303006 119303006 G A EMX2 Silent p.S76S 0.18 TCGA-EJ-7782-01 10 129899559 129899559 G A MKI67 Missense_Mutation p.T3223M 0.09 deleterious(0) benign(0.013) TCGA-EJ-7782-01 10 132891345 132891345 C T TCERG1L 3'UTR 0.33 TCGA-EJ-7782-01 10 133976844 133976844 C A JAKMIP3 Silent p.V782V 0.25 TCGA-EJ-7782-01 10 14961816 14961816 G A DCLRE1C Silent p.C359C 0.07 TCGA-EJ-7782-01 10 15254959 15254959 C T FAM171A1 Nonsense_Mutation p.W876* 0.30 TCGA-EJ-7782-01 10 38407509 38407509 G A ZNF37A Missense_Mutation p.R477H 0.33 tolerated(0.52) probably_damaging(0.997) TCGA-EJ-7782-01 10 43285947 43285947 G A BMS1 Silent p.T208T 0.32 TCGA-EJ-7782-01 10 51748529 51748529 C T AGAP6 Silent p.D18D 0.41 TCGA-EJ-7782-01 10 70451231 70451231 G A TET1 Missense_Mutation p.R2024Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-EJ-7782-01 10 70679687 70679687 G A DDX50 Missense_Mutation p.E397K 0.18 deleterious(0.05) benign(0.235) TCGA-EJ-7782-01 10 73765520 73765520 G A CHST3 5'UTR 0.09 TCGA-EJ-7782-01 10 75560464 75560464 C - ZSWIM8 Frame_Shift_Del p.Y1701Tfs*17 0.33 TCGA-EJ-7782-01 10 75563390 75563390 C T NDST2 Missense_Mutation p.R695Q 0.13 deleterious(0.02) benign(0.089) TCGA-EJ-7782-01 10 93572757 93572757 G A TNKS2 Missense_Mutation p.V73I 0.10 tolerated(0.22) probably_damaging(0.914) TCGA-EJ-7782-01 10 93768864 93768864 G A BTAF1 Silent p.P1334P 0.30 TCGA-EJ-7782-01 10 95721253 95721253 G A PIPSL RNA 0.07 TCGA-EJ-7782-01 10 96081787 96081787 G A PLCE1 Missense_Mutation p.V2158I 0.37 tolerated(0.36) benign(0.113) TCGA-EJ-7782-01 11 108068119 108068119 A G NPAT Silent p.S22S 0.16 TCGA-EJ-7782-01 11 118343381 118343381 C T KMT2A Missense_Mutation p.R503W 0.17 possibly_damaging(0.549) TCGA-EJ-7782-01 11 129800950 129800950 C T PRDM10 Silent p.T497T 0.20 TCGA-EJ-7782-01 11 14491076 14491076 T C COPB1 Missense_Mutation p.T591A 0.09 tolerated(0.08) benign(0.001) TCGA-EJ-7782-01 11 1578608 1578608 C T DUSP8 Missense_Mutation p.A340T 0.38 tolerated(0.22) benign(0.006) TCGA-EJ-7782-01 11 17428224 17428224 C T ABCC8 Missense_Mutation p.V1092M 0.25 deleterious(0) possibly_damaging(0.489) TCGA-EJ-7782-01 11 17793341 17793341 C T KCNC1 Missense_Mutation p.R234C 0.21 tolerated(0.06) possibly_damaging(0.827) TCGA-EJ-7782-01 11 2356903 2356903 C T CD81-AS1 Intron 0.22 TCGA-EJ-7782-01 11 3028112 3028112 C T CARS Missense_Mutation p.E716K 0.05 tolerated(0.07) benign(0.185) TCGA-EJ-7782-01 11 3122887 3122887 G A OSBPL5 Missense_Mutation p.R490W 0.29 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 11 55762087 55762088 - T OR5F1 Frame_Shift_Ins p.N5Kfs*7 0.21 TCGA-EJ-7782-01 11 56310191 56310191 C T OR5M11 Silent p.P181P 0.14 TCGA-EJ-7782-01 11 58979029 58979029 C T MPEG1 Missense_Mutation p.R437Q 0.06 tolerated(0.25) benign(0.002) TCGA-EJ-7782-01 11 61120574 61120574 G A CYB561A3 Missense_Mutation p.A161V 0.48 tolerated(0.06) benign(0.197) TCGA-EJ-7782-01 11 61495643 61495643 G A DAGLA Missense_Mutation p.A219T 0.06 deleterious(0) probably_damaging(0.99) TCGA-EJ-7782-01 11 62301277 62301277 G A AHNAK Silent p.T204T 0.23 TCGA-EJ-7782-01 11 64606680 64606680 G A CDC42BPG Missense_Mutation p.T234M 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 11 65307998 65307998 T C LTBP3 Missense_Mutation p.K1022R 0.20 tolerated(0.07) possibly_damaging(0.79) TCGA-EJ-7782-01 11 65365835 65365835 C - MAP3K11 Frame_Shift_Del p.G824Afs*123 0.26 TCGA-EJ-7782-01 11 65486259 65486259 G A RNASEH2C 3'UTR 0.08 TCGA-EJ-7782-01 11 65620113 65620113 C T SNX32 Missense_Mutation p.R309W 0.33 deleterious(0.03) benign(0.013) TCGA-EJ-7782-01 11 6592024 6592024 T A DNHD1 Missense_Mutation p.S4428T 0.41 benign(0.004) TCGA-EJ-7782-01 11 68506190 68506190 G A MTL5 Missense_Mutation p.P299S 0.09 tolerated(0.08) benign(0.178) TCGA-EJ-7782-01 11 70031720 70031720 G A ANO1 Silent p.P871P 0.24 TCGA-EJ-7782-01 11 70331617 70331617 G A SHANK2 Missense_Mutation p.A1595V 0.06 tolerated(0.08) possibly_damaging(0.483) TCGA-EJ-7782-01 11 9749627 9749627 C T SWAP70 Missense_Mutation p.R224W 0.08 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 12 104474531 104474531 G C HCFC2 Missense_Mutation p.M230I 0.42 deleterious(0.03) probably_damaging(0.968) TCGA-EJ-7782-01 12 109526137 109526137 G A ALKBH2 Silent p.H220H 0.28 TCGA-EJ-7782-01 12 109998845 109998845 C T MMAB Missense_Mutation p.R195H 0.22 tolerated(0.19) benign(0.331) TCGA-EJ-7782-01 12 113810526 113810526 G A PLBD2 Missense_Mutation p.E153K 0.31 tolerated(0.15) benign(0.063) TCGA-EJ-7782-01 12 120791157 120791157 G T MSI1 Silent p.T226T 0.24 TCGA-EJ-7782-01 12 121441812 121441812 C T C12orf43 3'UTR 0.33 TCGA-EJ-7782-01 12 123467254 123467254 C T ARL6IP4 3'UTR 0.11 TCGA-EJ-7782-01 12 124106408 124106408 C T EIF2B1 Silent p.P271P 0.15 TCGA-EJ-7782-01 12 132212946 132212946 C T SFSWAP Missense_Mutation p.P352S 0.45 tolerated(0.21) benign(0.018) TCGA-EJ-7782-01 12 132502815 132502815 G A EP400 Missense_Mutation p.A1391T 0.13 unknown(0) TCGA-EJ-7782-01 12 27829391 27829391 G - PPFIBP1 Frame_Shift_Del p.T499Pfs*46 0.21 TCGA-EJ-7782-01 12 27832572 27832572 A G PPFIBP1 Missense_Mutation p.K595R 0.12 tolerated(0.39) benign(0.004) TCGA-EJ-7782-01 12 346452 346452 G A SLC6A13 Missense_Mutation p.R190W 0.31 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 12 42778750 42778750 C T PPHLN1 Missense_Mutation p.R174C 0.29 tolerated(0.06) possibly_damaging(0.871) TCGA-EJ-7782-01 12 4705340 4705340 G A DYRK4 Missense_Mutation p.R103H 0.10 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 12 49169815 49169815 C T ADCY6 Silent p.G579G 0.38 TCGA-EJ-7782-01 12 49445333 49445333 C T KMT2D Silent p.P711P 0.30 TCGA-EJ-7782-01 12 50400278 50400278 C T RACGAP1 Missense_Mutation p.R76H 0.38 deleterious(0.02) benign(0.04) TCGA-EJ-7782-01 12 52156425 52156425 G A SCN8A Missense_Mutation p.V837M 0.25 tolerated(0.1) probably_damaging(0.981) TCGA-EJ-7782-01 12 56532267 56532267 G A ESYT1 Missense_Mutation p.R816Q 0.16 tolerated(0.36) possibly_damaging(0.566) TCGA-EJ-7782-01 12 56705008 56705008 G T CNPY2 Missense_Mutation p.T132N 0.36 tolerated(0.1) benign(0.007) TCGA-EJ-7782-01 12 56815747 56815747 G A TIMELESS Missense_Mutation p.R860C 0.06 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 12 57499054 57499054 C T STAT6 Missense_Mutation p.R294Q 0.23 deleterious(0) probably_damaging(0.925) TCGA-EJ-7782-01 12 60098741 60098741 T C SLC16A7 Silent p.T53T 0.36 TCGA-EJ-7782-01 12 6135163 6135163 T A VWF Missense_Mutation p.D1006V 0.24 deleterious(0) probably_damaging(0.997) TCGA-EJ-7782-01 12 64377821 64377821 A - SRGAP1 Frame_Shift_Del p.A57Lfs*11 0.18 TCGA-EJ-7782-01 12 71148354 71148355 TT - PTPRR Intron 0.11 TCGA-EJ-7782-01 12 72013161 72013161 A - ZFC3H1 Frame_Shift_Del p.L1693Cfs*26 0.29 TCGA-EJ-7782-01 13 113849441 113849441 T C PCID2 Splice_Site p.X157_splice 0.37 TCGA-EJ-7782-01 13 20235872 20235872 C T MPHOSPH8 Missense_Mutation p.A609V 0.12 tolerated(0.05) probably_damaging(1) TCGA-EJ-7782-01 13 25672097 25672097 A G PABPC3 Silent p.E587E 0.05 TCGA-EJ-7782-01 13 28014243 28014243 G A MTIF3 Nonsense_Mutation p.R115* 0.07 TCGA-EJ-7782-01 13 33684168 33684168 G - STARD13 Frame_Shift_Del p.S964Qfs*4 0.27 TCGA-EJ-7782-01 13 35770248 35770248 G A NBEA Silent p.T1725T 0.27 TCGA-EJ-7782-01 13 95034757 95034757 G A GPC6 Silent p.A414A 0.50 TCGA-EJ-7782-01 14 105409688 105409688 C T AHNAK2 Missense_Mutation p.V4034M 0.06 possibly_damaging(0.454) TCGA-EJ-7782-01 14 22133362 22133362 G A OR4E2 Silent p.V22V 0.34 TCGA-EJ-7782-01 14 23826398 23826398 G A EFS 3'UTR 0.44 TCGA-EJ-7782-01 14 23847969 23847969 C - CMTM5 Intron 0.14 TCGA-EJ-7782-01 14 24635411 24635411 G - IRF9 3'UTR 0.17 TCGA-EJ-7782-01 14 24642164 24642164 C T REC8 Missense_Mutation p.P61L 0.38 deleterious(0) probably_damaging(0.964) TCGA-EJ-7782-01 14 29237390 29237390 G A FOXG1 Missense_Mutation p.R302H 0.30 deleterious(0) benign(0.154) TCGA-EJ-7782-01 14 35255348 35255348 C T BAZ1A Nonsense_Mutation p.W530* 0.15 TCGA-EJ-7782-01 14 38061250 38061250 G A FOXA1 Missense_Mutation p.H247Y 0.38 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 14 47504410 47504410 T C MDGA2 Silent p.K541K 0.05 TCGA-EJ-7782-01 14 50176534 50176534 A G KLHDC1 Missense_Mutation p.Y92C 0.26 deleterious(0.04) probably_damaging(0.983) TCGA-EJ-7782-01 14 71197058 71197058 C T MAP3K9 3'UTR 0.47 TCGA-EJ-7782-01 14 77935578 77935578 G A AHSA1 Missense_Mutation p.A335T 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-EJ-7782-01 14 78140481 78140481 T C ALKBH1 Missense_Mutation p.S282G 0.34 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 14 93022190 93022190 C T RIN3 Missense_Mutation p.R47C 0.37 deleterious(0.04) unknown(0) TCGA-EJ-7782-01 14 94756471 94756471 G A SERPINA10 Missense_Mutation p.R154C 0.21 tolerated(0.06) possibly_damaging(0.452) TCGA-EJ-7782-01 14 95571440 95571440 G A DICER1 Silent p.G1079G 0.36 TCGA-EJ-7782-01 15 27193181 27193181 C T GABRA5 Missense_Mutation p.T397M 0.24 tolerated(0.24) benign(0.214) TCGA-EJ-7782-01 15 40544701 40544701 C T C15orf56 Missense_Mutation p.A91T 0.25 tolerated_low_confidence(0.15) possibly_damaging(0.695) TCGA-EJ-7782-01 15 42193022 42193022 C T EHD4 Missense_Mutation p.V483I 0.09 tolerated(0.13) probably_damaging(0.981) TCGA-EJ-7782-01 15 43653169 43653169 C A ZSCAN29 3'UTR 0.46 TCGA-EJ-7782-01 15 49574217 49574217 C T GALK2 Missense_Mutation p.R180C 0.28 deleterious(0) probably_damaging(0.989) TCGA-EJ-7782-01 15 56735681 56735681 G A MNS1 Nonsense_Mutation p.R320* 0.19 TCGA-EJ-7782-01 15 59179240 59179240 G A SLTM Silent p.S923S 0.11 TCGA-EJ-7782-01 15 63363387 63363387 C T TPM1 3'UTR 0.33 TCGA-EJ-7782-01 15 65622631 65622631 C A IGDCC3 Missense_Mutation p.A620S 0.10 tolerated(0.15) benign(0.011) TCGA-EJ-7782-01 15 74883589 74883589 C T ARID3B Missense_Mutation p.R327W 0.22 deleterious(0.01) probably_damaging(1) TCGA-EJ-7782-01 15 75655014 75655014 C T MAN2C1 Missense_Mutation p.R289Q 0.26 tolerated(0.48) benign(0.002) TCGA-EJ-7782-01 15 82336338 82336338 C T MEX3B Silent p.S291S 0.22 TCGA-EJ-7782-01 15 83221233 83221233 C A CPEB1 Missense_Mutation p.K399N 0.20 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 15 85659319 85659325 ATTTTTG - PDE8A Frame_Shift_Del p.I502Nfs*11 0.30 TCGA-EJ-7782-01 15 91456125 91456125 C - MAN2A2 Frame_Shift_Del p.V832Cfs*82 0.11 TCGA-EJ-7782-01 15 91832792 91832792 T - SV2B Frame_Shift_Del p.F585Lfs*8 0.25 TCGA-EJ-7782-01 16 10788424 10788424 G A TEKT5 Missense_Mutation p.R103C 0.08 tolerated(0.07) benign(0.071) TCGA-EJ-7782-01 16 21053359 21053359 T C DNAH3 Missense_Mutation p.D1543G 0.29 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 16 2143019 2143019 C T PKD1 Missense_Mutation p.A3698T 0.12 probably_damaging(0.996) TCGA-EJ-7782-01 16 2226330 2226330 C T TRAF7 Missense_Mutation p.A648V 0.33 deleterious(0.03) possibly_damaging(0.575) TCGA-EJ-7782-01 16 27372111 27372111 C T IL4R Nonsense_Mutation p.R292* 0.29 TCGA-EJ-7782-01 16 3076395 3076395 C A THOC6 Missense_Mutation p.A131D 0.47 deleterious(0.01) possibly_damaging(0.461) TCGA-EJ-7782-01 16 31485718 31485718 C T TGFB1I1 Missense_Mutation p.A154V 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-EJ-7782-01 16 66413286 66413286 G A CDH5 Missense_Mutation p.G16S 0.26 tolerated(0.26) benign(0.083) TCGA-EJ-7782-01 16 66600560 66600560 C T CMTM1 Silent p.T48T 0.08 TCGA-EJ-7782-01 16 67264379 67264379 G A FHOD1 Silent p.Y963Y 0.14 TCGA-EJ-7782-01 16 67300093 67300093 C T SLC9A5 Missense_Mutation p.A728V 0.36 tolerated(0.5) possibly_damaging(0.476) TCGA-EJ-7782-01 16 67319227 67319227 G A PLEKHG4 Missense_Mutation p.E744K 0.41 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 16 67865241 67865241 G A CENPT Missense_Mutation p.A194V 0.36 tolerated(0.13) benign(0.009) TCGA-EJ-7782-01 16 68844157 68844157 T G CDH1 Missense_Mutation p.L249V 0.31 tolerated(0.94) benign(0) TCGA-EJ-7782-01 16 69400909 69400909 A G TERF2 Missense_Mutation p.S339P 0.38 deleterious(0.02) benign(0.004) TCGA-EJ-7782-01 16 69776057 69776057 C A NOB1 3'UTR 0.25 TCGA-EJ-7782-01 16 70820236 70820236 G A VAC14 Missense_Mutation p.T46I 0.28 deleterious(0.01) benign(0.05) TCGA-EJ-7782-01 16 70934964 70934964 C T HYDIN Silent p.L2997L 0.17 TCGA-EJ-7782-01 16 71516014 71516014 C T ZNF19 Missense_Mutation p.A2T 0.45 tolerated(0.15) benign(0.272) TCGA-EJ-7782-01 16 72822112 72822113 - C ZFHX3 Frame_Shift_Ins p.L3355Afs*76 0.24 TCGA-EJ-7782-01 16 836359 836359 C A RPUSD1 Missense_Mutation p.R177L 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 16 84438757 84438757 G A ATP2C2 Silent p.S78S 0.27 TCGA-EJ-7782-01 16 84514162 84514162 C T TLDC1 Silent p.A410A 0.34 TCGA-EJ-7782-01 16 84600556 84600556 G A COTL1 Silent p.F108F 0.24 TCGA-EJ-7782-01 16 84690912 84690912 A G KLHL36 Missense_Mutation p.I167V 0.12 tolerated(0.34) benign(0.036) TCGA-EJ-7782-01 16 89295034 89295034 G A ZNF778 3'UTR 0.26 TCGA-EJ-7782-01 17 10448739 10448739 G A MYH2 Silent p.Y143Y 0.33 TCGA-EJ-7782-01 17 14248733 14248733 C A HS3ST3B1 Missense_Mutation p.L315M 0.19 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 17 1543259 1543259 G T SCARF1 Silent p.S362S 0.14 TCGA-EJ-7782-01 17 15965099 15965099 G - NCOR1 Frame_Shift_Del p.Q1833Rfs*17 0.18 TCGA-EJ-7782-01 17 18168100 18168100 C T MIEF2 3'UTR 0.09 TCGA-EJ-7782-01 17 1961548 1961548 G A HIC1 Missense_Mutation p.G541R 0.32 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 17 20160892 20160892 C T SPECC1 Missense_Mutation p.R937W 0.38 deleterious(0.01) possibly_damaging(0.462) TCGA-EJ-7782-01 17 25944348 25944348 G A KSR1 Missense_Mutation p.D726N 0.18 tolerated(0.12) benign(0.022) TCGA-EJ-7782-01 17 3195143 3195143 C T OR3A1 Missense_Mutation p.G245D 0.29 deleterious(0) possibly_damaging(0.848) TCGA-EJ-7782-01 17 33344575 33344575 G A RFFL Silent p.S214S 0.33 TCGA-EJ-7782-01 17 34893859 34893859 C T PIGW Silent p.R303R 0.23 TCGA-EJ-7782-01 17 37687472 37687472 G - CDK12 Frame_Shift_Del p.G1461Afs*38 0.28 TCGA-EJ-7782-01 17 39551745 39551745 C T KRT31 Missense_Mutation p.R240H 0.26 tolerated(0.16) benign(0.077) TCGA-EJ-7782-01 17 43515294 43515294 G A PLEKHM1 Missense_Mutation p.A1034V 0.15 deleterious(0) benign(0.224) TCGA-EJ-7782-01 17 46111238 46111238 G A COPZ2 Missense_Mutation p.R85W 0.18 deleterious(0) benign(0.104) TCGA-EJ-7782-01 17 47677762 47677762 C T SPOP Missense_Mutation p.R368H 0.06 tolerated(0.56) possibly_damaging(0.816) TCGA-EJ-7782-01 17 47696426 47696426 A C SPOP Missense_Mutation p.F133V 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-EJ-7782-01 17 48437450 48437450 G A XYLT2 Missense_Mutation p.R799Q 0.29 tolerated(0.36) benign(0.003) TCGA-EJ-7782-01 17 4850039 4850041 TTC - PFN1 In_Frame_Del p.K70del 0.28 TCGA-EJ-7782-01 17 55183676 55183676 C T AKAP1 Missense_Mutation p.A284V 0.18 tolerated(0.21) benign(0.069) TCGA-EJ-7782-01 17 56435189 56435189 G A RNF43 Nonsense_Mutation p.R650* 0.30 TCGA-EJ-7782-01 17 62492847 62492847 A G POLG2 Silent p.S80S 0.26 TCGA-EJ-7782-01 17 650298 650298 C - GEMIN4 Frame_Shift_Del p.E329Rfs*24 0.14 TCGA-EJ-7782-01 17 7224437 7224437 G A NEURL4 Silent p.G1118G 0.08 TCGA-EJ-7782-01 17 72860461 72860461 G A FDXR Missense_Mutation p.R314C 0.17 deleterious(0) probably_damaging(0.998) TCGA-EJ-7782-01 17 73035039 73035039 A G ATP5H Silent p.I158I 0.27 TCGA-EJ-7782-01 17 7360108 7360108 C A CHRNB1 3'UTR 0.19 TCGA-EJ-7782-01 17 74013981 74013981 A C EVPL Missense_Mutation p.S517A 0.35 tolerated(0.14) benign(0.026) TCGA-EJ-7782-01 17 74467835 74467835 G A RHBDF2 Silent p.A817A 0.27 TCGA-EJ-7782-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.16 tolerated(0.1) benign(0.438) TCGA-EJ-7782-01 17 77079175 77079177 AGA - ENGASE In_Frame_Del p.K373del 0.24 TCGA-EJ-7782-01 17 79225307 79225307 G A SLC38A10 Missense_Mutation p.A684V 0.20 tolerated(0.09) benign(0.315) TCGA-EJ-7782-01 17 80016030 80016030 T G DUS1L Silent p.P461P 0.23 TCGA-EJ-7782-01 17 80356123 80356123 G A OGFOD3 Missense_Mutation p.R258W 0.35 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 17 80788498 80788498 C T ZNF750 Silent p.P564P 0.15 TCGA-EJ-7782-01 18 20768869 20768869 C T CABLES1 Missense_Mutation p.R305W 0.21 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-EJ-7782-01 18 29488975 29488975 T C TRAPPC8 Splice_Site p.X289_splice 0.26 TCGA-EJ-7782-01 18 29848728 29848728 G A GAREM Silent p.S579S 0.19 TCGA-EJ-7782-01 18 30804860 30804860 C T CCDC178 Missense_Mutation p.R566Q 0.45 tolerated(0.07) possibly_damaging(0.853) TCGA-EJ-7782-01 18 30950099 30950099 A G CCDC178 Missense_Mutation p.V88A 0.26 deleterious(0.04) benign(0.067) TCGA-EJ-7782-01 18 3272921 3272921 A G MYL12B Missense_Mutation p.K9E 0.28 deleterious(0.04) benign(0.013) TCGA-EJ-7782-01 18 43248313 43248313 G A SLC14A2 Splice_Site p.X636_splice 0.35 TCGA-EJ-7782-01 18 66344197 66344197 C A TMX3 Missense_Mutation p.K446N 0.09 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-EJ-7782-01 19 10446010 10446011 - G ICAM3 Frame_Shift_Ins p.R224Afs*90 0.31 TCGA-EJ-7782-01 19 10578250 10578250 G A PDE4A Missense_Mutation p.A872T 0.08 tolerated_low_confidence(0.91) benign(0.001) TCGA-EJ-7782-01 19 1106407 1106407 C T GPX4 Silent p.I170I 0.23 TCGA-EJ-7782-01 19 11560238 11560238 G A PRKCSH 3'UTR 0.35 TCGA-EJ-7782-01 19 12383898 12383898 C T ZNF44 Missense_Mutation p.G439D 0.31 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 19 1271165 1271165 C T CIRBP Nonsense_Mutation p.Q44* 0.30 TCGA-EJ-7782-01 19 13325397 13325397 G A CACNA1A Silent p.D1919D 0.36 TCGA-EJ-7782-01 19 14020732 14020732 G A CC2D1A Missense_Mutation p.G53R 0.26 deleterious(0) possibly_damaging(0.857) TCGA-EJ-7782-01 19 14070466 14070466 G A DCAF15 Missense_Mutation p.R431Q 0.09 tolerated(0.05) benign(0.245) TCGA-EJ-7782-01 19 14517970 14517970 T C CD97 Missense_Mutation p.Y769H 0.09 deleterious(0.02) probably_damaging(1) TCGA-EJ-7782-01 19 1482438 1482438 G A PCSK4 Missense_Mutation p.T578M 0.41 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 19 16625316 16625316 G A C19orf44 Missense_Mutation p.A582T 0.24 deleterious(0) probably_damaging(0.976) TCGA-EJ-7782-01 19 16973201 16973202 - G SIN3B Frame_Shift_Ins p.V368Gfs*23 0.12 TCGA-EJ-7782-01 19 17305687 17305687 C T MYO9B Missense_Mutation p.R1151C 0.35 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 19 17688792 17688792 C T COLGALT1 Missense_Mutation p.A387V 0.38 tolerated(0.13) benign(0.26) TCGA-EJ-7782-01 19 19748735 19748735 C A GMIP Silent p.L307L 0.38 TCGA-EJ-7782-01 19 2222180 2222180 C T DOT1L Silent p.H1004H 0.45 TCGA-EJ-7782-01 19 33608948 33608948 G A GPATCH1 Splice_Site p.X805_splice 0.21 TCGA-EJ-7782-01 19 33697253 33697253 G A LRP3 Missense_Mutation p.R526H 0.32 deleterious(0) probably_damaging(0.991) TCGA-EJ-7782-01 19 36363411 36363411 G A APLP1 Missense_Mutation p.G293S 0.23 tolerated(0.34) probably_damaging(0.999) TCGA-EJ-7782-01 19 38937375 38937375 G A RYR1 Missense_Mutation p.R256H 0.30 probably_damaging(1) TCGA-EJ-7782-01 19 39879989 39879989 G A PAF1 Nonsense_Mutation p.R132* 0.29 TCGA-EJ-7782-01 19 41744449 41744449 C T AXL Missense_Mutation p.R357W 0.50 deleterious(0.02) possibly_damaging(0.846) TCGA-EJ-7782-01 19 44096034 44096034 C A IRGQ 3'UTR 0.36 TCGA-EJ-7782-01 19 44611289 44611289 C T ZNF224 Missense_Mutation p.R326C 0.11 tolerated(0.1) possibly_damaging(0.892) TCGA-EJ-7782-01 19 45805663 45805664 - C MARK4 Frame_Shift_Ins p.R654Pfs*18 0.24 TCGA-EJ-7782-01 19 47127100 47127100 G A PTGIR Missense_Mutation p.A128V 0.47 tolerated(0.07) benign(0.151) TCGA-EJ-7782-01 19 47884519 47884519 C T DHX34 Missense_Mutation p.T1079M 0.14 deleterious(0) probably_damaging(0.993) TCGA-EJ-7782-01 19 4817623 4817623 G A TICAM1 Missense_Mutation p.P256L 0.09 deleterious(0) probably_damaging(0.995) TCGA-EJ-7782-01 19 49012151 49012151 G T LMTK3 Missense_Mutation p.P201T 0.35 possibly_damaging(0.882) TCGA-EJ-7782-01 19 49132872 49132872 G A SPHK2 Missense_Mutation p.A603T 0.30 tolerated(0.27) benign(0.186) TCGA-EJ-7782-01 19 49548414 49548414 G - CGB5 Frame_Shift_Del p.G122Vfs*7 0.11 TCGA-EJ-7782-01 19 49714069 49714069 A G TRPM4 Missense_Mutation p.D1144G 0.18 deleterious(0.04) benign(0.01) TCGA-EJ-7782-01 19 50302915 50302915 G T AP2A1 Silent p.R388R 0.08 TCGA-EJ-7782-01 19 52618188 52618188 T - ZNF616 Frame_Shift_Del p.K743Nfs*23 0.12 TCGA-EJ-7782-01 19 53886767 53886767 G A ZNF525 3'UTR 0.31 TCGA-EJ-7782-01 19 57133248 57133248 G A ZNF71 Missense_Mutation p.R198H 0.30 tolerated(0.14) possibly_damaging(0.45) TCGA-EJ-7782-01 19 57985397 57985397 C T ZNF772 Missense_Mutation p.E239K 0.08 deleterious(0.05) benign(0.022) TCGA-EJ-7782-01 19 7828111 7828111 T C CLEC4M 5'UTR 0.17 TCGA-EJ-7782-01 19 7828137 7828137 G A CLEC4M 5'UTR 0.06 TCGA-EJ-7782-01 19 9058758 9058758 G C MUC16 Missense_Mutation p.T9563R 0.47 unknown(0) TCGA-EJ-7782-01 1 109838900 109838900 C T MYBPHL Missense_Mutation p.G275S 0.15 deleterious(0.01) possibly_damaging(0.849) TCGA-EJ-7782-01 1 110029640 110029640 G - ATXN7L2 Frame_Shift_Del p.L106Sfs*23 0.17 TCGA-EJ-7782-01 1 110171762 110171762 A G AMPD2 Missense_Mutation p.N589D 0.37 deleterious(0.03) possibly_damaging(0.799) TCGA-EJ-7782-01 1 110603475 110603475 G A ALX3 Silent p.P304P 0.15 TCGA-EJ-7782-01 1 113197226 113197226 G T CAPZA1 Missense_Mutation p.W120L 0.09 tolerated(0.19) benign(0.034) TCGA-EJ-7782-01 1 117516856 117516856 C A PTGFRN Missense_Mutation p.S693Y 0.35 deleterious(0) probably_damaging(0.998) TCGA-EJ-7782-01 1 12017970 12017970 C T PLOD1 Silent p.D271D 0.45 TCGA-EJ-7782-01 1 12460321 12460321 C T VPS13D Silent p.T3906T 0.24 TCGA-EJ-7782-01 1 12806325 12806325 C T C1orf158 5'UTR 0.17 TCGA-EJ-7782-01 1 147090766 147090766 G A BCL9 Missense_Mutation p.A269T 0.32 tolerated(0.31) benign(0) TCGA-EJ-7782-01 1 150469374 150469374 C T TARS2 Missense_Mutation p.A337V 0.14 deleterious(0.04) benign(0.23) TCGA-EJ-7782-01 1 153516337 153516337 G A S100A4 Silent p.N68N 0.10 TCGA-EJ-7782-01 1 154179947 154179947 T A C1orf43 Silent p.T248T 0.30 TCGA-EJ-7782-01 1 156104218 156104218 A - LMNA Frame_Shift_Del p.K180Rfs*21 0.24 TCGA-EJ-7782-01 1 156288708 156288708 C T CCT3 Missense_Mutation p.R237H 0.32 deleterious(0) possibly_damaging(0.888) TCGA-EJ-7782-01 1 159860404 159860404 G C CCDC19 Silent p.A46A 0.07 TCGA-EJ-7782-01 1 163317627 163317627 C T NUF2 Silent p.F341F 0.12 TCGA-EJ-7782-01 1 16458599 16458599 C T EPHA2 Missense_Mutation p.R762H 0.14 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 1 16534048 16534048 G A ARHGEF19 Silent p.N281N 0.25 TCGA-EJ-7782-01 1 17322515 17322515 G A ATP13A2 Missense_Mutation p.R500C 0.07 deleterious(0) probably_damaging(0.998) TCGA-EJ-7782-01 1 185259915 185259915 A G SWT1 Missense_Mutation p.M895V 0.38 tolerated_low_confidence(0.18) benign(0.004) TCGA-EJ-7782-01 1 186009011 186009011 G A HMCN1 Silent p.Q2060Q 0.23 TCGA-EJ-7782-01 1 186280171 186280171 T C PRG4 Missense_Mutation p.Y1169H 0.26 unknown(0) TCGA-EJ-7782-01 1 201358366 201358366 C T LAD1 Missense_Mutation p.R35H 0.17 deleterious(0) probably_damaging(0.997) TCGA-EJ-7782-01 1 208390533 208390533 G A PLXNA2 Silent p.Y245Y 0.23 TCGA-EJ-7782-01 1 220091981 220091981 A C SLC30A10 Intron 0.25 TCGA-EJ-7782-01 1 223946929 223946929 G A CAPN2 Intron 0.24 TCGA-EJ-7782-01 1 223971888 223971888 C T TP53BP2 Missense_Mutation p.E1098K 0.31 deleterious(0.02) possibly_damaging(0.908) TCGA-EJ-7782-01 1 226016443 226016443 A G EPHX1 Missense_Mutation p.I5V 0.16 tolerated(0.52) benign(0.009) TCGA-EJ-7782-01 1 226109030 226109030 G A RP4-559A3.7 Silent p.C151C 0.48 TCGA-EJ-7782-01 1 228475944 228475944 C T OBSCN Missense_Mutation p.R3761C 0.29 benign(0.014) TCGA-EJ-7782-01 1 231057237 231057237 T C TTC13 Missense_Mutation p.N610D 0.11 tolerated(0.16) probably_damaging(0.998) TCGA-EJ-7782-01 1 235416114 235416114 G A ARID4B Silent p.D95D 0.26 TCGA-EJ-7782-01 1 244724125 244724125 G A C1orf101 Silent p.E395E 0.32 TCGA-EJ-7782-01 1 248813806 248813806 C A OR2T27 Missense_Mutation p.C127F 0.11 deleterious(0) probably_damaging(0.932) TCGA-EJ-7782-01 1 25815687 25815687 G A TMEM57 Missense_Mutation p.R507Q 0.21 deleterious(0.01) benign(0.252) TCGA-EJ-7782-01 1 26603800 26603800 T C CEP85 3'UTR 0.19 TCGA-EJ-7782-01 1 28285052 28285052 C T SMPDL3B Silent p.L357L 0.20 TCGA-EJ-7782-01 1 33612961 33612961 C A TRIM62 Missense_Mutation p.K415N 0.19 deleterious(0.03) probably_damaging(0.995) TCGA-EJ-7782-01 1 33625513 33625513 G A TRIM62 Silent p.G179G 0.14 TCGA-EJ-7782-01 1 33820087 33820087 T C PHC2 Silent p.S490S 0.10 TCGA-EJ-7782-01 1 3427388 3427388 T C MEGF6 Missense_Mutation p.Y398C 0.12 tolerated(0.13) possibly_damaging(0.88) TCGA-EJ-7782-01 1 35222918 35222918 C T GJB5 5'UTR 0.14 TCGA-EJ-7782-01 1 46073658 46073658 G A NASP Missense_Mutation p.A359T 0.24 deleterious_low_confidence(0) benign(0.05) TCGA-EJ-7782-01 1 46746931 46746931 C T LRRC41 Missense_Mutation p.R541H 0.22 tolerated(0.47) possibly_damaging(0.715) TCGA-EJ-7782-01 1 46751327 46751327 C T LRRC41 Missense_Mutation p.R401H 0.34 tolerated(0.52) possibly_damaging(0.715) TCGA-EJ-7782-01 1 6294999 6294999 G A ICMT Silent p.F77F 0.32 TCGA-EJ-7782-01 1 6634741 6634741 C A TAS1R1 Silent p.P183P 0.40 TCGA-EJ-7782-01 1 67091534 67091535 - A SGIP1 Frame_Shift_Ins p.R8Tfs*16 0.09 TCGA-EJ-7782-01 1 78338708 78338708 C T FAM73A Missense_Mutation p.A528V 0.19 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 1 78479135 78479136 - A DNAJB4 Frame_Shift_Ins p.G207Rfs*16 0.25 TCGA-EJ-7782-01 1 78958359 78958359 G C PTGFR Intron 0.45 TCGA-EJ-7782-01 1 84880400 84880400 A - DNASE2B Frame_Shift_Del p.K313Rfs*13 0.24 TCGA-EJ-7782-01 1 86942145 86942145 C T CLCA1 Missense_Mutation p.H156Y 0.24 deleterious(0) probably_damaging(0.966) TCGA-EJ-7782-01 1 92789302 92789302 C T RPAP2 Silent p.G275G 0.24 TCGA-EJ-7782-01 1 949846 949846 C T ISG15 Silent p.G162G 0.27 TCGA-EJ-7782-01 1 9811693 9811693 C T CLSTN1 Missense_Mutation p.V163M 0.20 deleterious(0.04) benign(0.042) TCGA-EJ-7782-01 20 1445045 1445045 G A NSFL1C Silent p.D44D 0.28 TCGA-EJ-7782-01 20 16359674 16359674 C A KIF16B Missense_Mutation p.K991N 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EJ-7782-01 20 18005394 18005394 C T OVOL2 Silent p.P238P 0.31 TCGA-EJ-7782-01 20 25596622 25596622 G A NANP Missense_Mutation p.S229F 0.18 deleterious(0) probably_damaging(0.97) TCGA-EJ-7782-01 20 4202253 4202253 C T ADRA1D Missense_Mutation p.V546I 0.11 tolerated_low_confidence(0.49) benign(0.001) TCGA-EJ-7782-01 20 43945644 43945644 G A RBPJL 3'UTR 0.38 TCGA-EJ-7782-01 20 47706243 47706243 G A CSE1L Missense_Mutation p.R714H 0.27 tolerated(0.29) benign(0.005) TCGA-EJ-7782-01 20 56099037 56099037 G A CTCFL Silent p.S75S 0.37 TCGA-EJ-7782-01 20 60773005 60773005 C T MTG2 Silent p.G150G 0.26 TCGA-EJ-7782-01 20 61391477 61391477 G A NTSR1 Missense_Mutation p.R372H 0.05 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 21 34132172 34132173 - T PAXBP1 Frame_Shift_Ins p.T370Nfs*3 0.21 TCGA-EJ-7782-01 21 41033216 41033216 G A B3GALT5 Missense_Mutation p.V244M 0.29 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 22 19226837 19226837 A - CLTCL1 Frame_Shift_Del p.P253Lfs*23 0.26 TCGA-EJ-7782-01 22 20939447 20939447 C T MED15 Missense_Mutation p.P675L 0.38 deleterious(0.01) probably_damaging(0.925) TCGA-EJ-7782-01 22 22153339 22153339 G A MAPK1 Missense_Mutation p.R191C 0.24 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 22 23438097 23438099 TCA - GNAZ In_Frame_Del p.I74del 0.11 TCGA-EJ-7782-01 22 30416462 30416462 C A MTMR3 Silent p.A938A 0.30 TCGA-EJ-7782-01 22 30776081 30776081 C T RNF215 Silent p.A326A 0.06 TCGA-EJ-7782-01 22 30776149 30776149 T C RNF215 Missense_Mutation p.K304E 0.13 deleterious(0.01) probably_damaging(0.993) TCGA-EJ-7782-01 22 30951602 30951602 A G GAL3ST1 Missense_Mutation p.Y204H 0.08 deleterious(0) possibly_damaging(0.582) TCGA-EJ-7782-01 22 37524301 37524301 C T IL2RB Silent p.G497G 0.24 TCGA-EJ-7782-01 22 39814776 39814776 G T TAB1 Missense_Mutation p.G197V 0.25 deleterious(0.03) probably_damaging(1) TCGA-EJ-7782-01 22 42423017 42423017 C A WBP2NL Silent p.A254A 0.05 TCGA-EJ-7782-01 22 44063044 44063044 T - EFCAB6 Frame_Shift_Del p.K641Nfs*38 0.14 TCGA-EJ-7782-01 22 46725429 46725429 A - GTSE1 Frame_Shift_Del p.N702Mfs*13 0.26 TCGA-EJ-7782-01 2 101183001 101183001 C T PDCL3 Missense_Mutation p.R15C 0.10 deleterious(0.03) benign(0.24) TCGA-EJ-7782-01 2 10269554 10269554 T C RRM2 3'UTR 0.07 TCGA-EJ-7782-01 2 113069447 113069447 G A ZC3H6 Missense_Mutation p.R227Q 0.29 tolerated(0.1) probably_damaging(0.994) TCGA-EJ-7782-01 2 120776691 120776691 C T EPB41L5 Missense_Mutation p.R11C 0.07 deleterious(0) probably_damaging(0.985) TCGA-EJ-7782-01 2 121708835 121708835 G A GLI2 Missense_Mutation p.G91S 0.05 tolerated(0.19) benign(0.138) TCGA-EJ-7782-01 2 136605708 136605708 G T MCM6 Silent p.I656I 0.17 TCGA-EJ-7782-01 2 148602758 148602758 C G ACVR2A Missense_Mutation p.L13V 0.36 tolerated(0.21) benign(0.001) TCGA-EJ-7782-01 2 165809221 165809221 A G SLC38A11 Silent p.V19V 0.15 TCGA-EJ-7782-01 2 166621492 166621492 G A GALNT3 Missense_Mutation p.A197V 0.40 deleterious(0) probably_damaging(0.952) TCGA-EJ-7782-01 2 179440959 179440959 C T TTN Silent p.Q23300Q 0.14 TCGA-EJ-7782-01 2 196729067 196729067 G A DNAH7 Missense_Mutation p.R2438C 0.06 deleterious(0.03) probably_damaging(0.992) TCGA-EJ-7782-01 2 206480515 206480515 A G PARD3B Missense_Mutation p.N1137S 0.20 tolerated(0.09) possibly_damaging(0.624) TCGA-EJ-7782-01 2 220439863 220439863 G A INHA Nonsense_Mutation p.W239* 0.30 TCGA-EJ-7782-01 2 223158771 223158771 G A PAX3 Intron 0.39 TCGA-EJ-7782-01 2 232578128 232578129 - T PTMA 3'UTR 0.32 TCGA-EJ-7782-01 2 234237188 234237188 C T SAG Nonsense_Mutation p.R193* 0.24 TCGA-EJ-7782-01 2 234371288 234371288 G T DGKD Splice_Site p.X1032_splice 0.06 TCGA-EJ-7782-01 2 239049574 239049574 C T KLHL30 Missense_Mutation p.A60V 0.32 deleterious(0) probably_damaging(0.981) TCGA-EJ-7782-01 2 241468861 241468861 G A ANKMY1 Silent p.D93D 0.12 TCGA-EJ-7782-01 2 242755694 242755694 C T NEU4 Missense_Mutation p.R18C 0.10 tolerated(0.05) possibly_damaging(0.854) TCGA-EJ-7782-01 2 25463271 25463271 G A DNMT3A Missense_Mutation p.A741V 0.35 deleterious(0.04) benign(0.396) TCGA-EJ-7782-01 2 37035644 37035644 G A VIT Silent p.S473S 0.41 TCGA-EJ-7782-01 2 39095333 39095333 C T DHX57 Missense_Mutation p.R72H 0.11 tolerated_low_confidence(0.22) benign(0.002) TCGA-EJ-7782-01 2 47693894 47693895 - A MSH2 Frame_Shift_Ins p.N538Kfs*3 0.25 TCGA-EJ-7782-01 2 68717386 68717386 T C APLF Missense_Mutation p.I54T 0.27 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 2 6989761 6989761 C T CMPK2 3'UTR 0.37 TCGA-EJ-7782-01 2 84800604 84800604 C T DNAH6 Missense_Mutation p.A606V 0.13 tolerated(0.54) benign(0.004) TCGA-EJ-7782-01 2 96955623 96955623 G A SNRNP200 Missense_Mutation p.R952C 0.06 deleterious(0) possibly_damaging(0.886) TCGA-EJ-7782-01 2 98418415 98418415 C G TMEM131 Missense_Mutation p.L887F 0.39 tolerated(0.13) possibly_damaging(0.494) TCGA-EJ-7782-01 3 101060605 101060605 C T SENP7 Missense_Mutation p.A709T 0.15 tolerated(0.33) benign(0.009) TCGA-EJ-7782-01 3 10219597 10219597 C T IRAK2 Missense_Mutation p.T57M 0.34 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 3 10392202 10392202 G A ATP2B2 Silent p.G732G 0.30 TCGA-EJ-7782-01 3 10429962 10429962 T - ATP2B2 Frame_Shift_Del p.G303Vfs*2 0.27 TCGA-EJ-7782-01 3 105260577 105260577 G A ALCAM Missense_Mutation p.S320N 0.11 tolerated(0.57) benign(0.03) TCGA-EJ-7782-01 3 108363248 108363248 C T DZIP3 Missense_Mutation p.P460L 0.21 tolerated_low_confidence(0.4) probably_damaging(0.999) TCGA-EJ-7782-01 3 121437312 121437312 C T GOLGB1 Missense_Mutation p.E270K 0.09 probably_damaging(0.999) TCGA-EJ-7782-01 3 123699209 123699209 G A ROPN1 Intron 0.37 TCGA-EJ-7782-01 3 125170172 125170172 T C SNX4 Missense_Mutation p.M428V 0.12 deleterious(0.01) benign(0.003) TCGA-EJ-7782-01 3 128780917 128780917 G A GP9 Missense_Mutation p.R112H 0.19 tolerated(0.23) benign(0.015) TCGA-EJ-7782-01 3 130286065 130286065 A T COL6A6 Missense_Mutation p.D601V 0.25 tolerated(0.27) possibly_damaging(0.895) TCGA-EJ-7782-01 3 14746120 14746120 C T C3orf20 Silent p.F385F 0.24 TCGA-EJ-7782-01 3 148924002 148924002 G T CP Silent p.P387P 0.27 TCGA-EJ-7782-01 3 149684332 149684332 C T PFN2 Missense_Mutation p.G123R 0.07 tolerated(0.53) benign(0.02) TCGA-EJ-7782-01 3 151011924 151011924 T C GPR87 3'UTR 0.11 TCGA-EJ-7782-01 3 156411927 156411927 G A TIPARP Missense_Mutation p.V346I 0.36 tolerated(0.14) benign(0.003) TCGA-EJ-7782-01 3 159711354 159711354 G A IL12A Splice_Site p.X141_splice 0.09 TCGA-EJ-7782-01 3 175520891 175520891 A G NAALADL2 Missense_Mutation p.Q763R 0.12 deleterious(0.04) benign(0.147) TCGA-EJ-7782-01 3 178952026 178952026 C A PIK3CA Silent p.A1027A 0.15 TCGA-EJ-7782-01 3 183667646 183667646 C T ABCC5 Missense_Mutation p.R1041H 0.07 deleterious(0.02) probably_damaging(0.958) TCGA-EJ-7782-01 3 184801249 184801249 G A C3orf70 Missense_Mutation p.S100L 0.08 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-EJ-7782-01 3 186947661 186947661 C T MASP1 3'Flank 0.30 TCGA-EJ-7782-01 3 188327517 188327519 CTC - LPP In_Frame_Del p.P335del 0.20 TCGA-EJ-7782-01 3 25674067 25674067 T - TOP2B Frame_Shift_Del p.N374Tfs*24 0.38 TCGA-EJ-7782-01 3 31705656 31705656 C T OSBPL10 Missense_Mutation p.R722Q 0.08 tolerated(0.14) benign(0.149) TCGA-EJ-7782-01 3 38038579 38038579 C A VILL Silent p.S154S 0.07 TCGA-EJ-7782-01 3 38167143 38167143 C - ACAA1 Frame_Shift_Del p.G371Vfs*5 0.20 TCGA-EJ-7782-01 3 40251426 40251426 C T MYRIP Missense_Mutation p.R583W 0.06 deleterious(0.01) possibly_damaging(0.72) TCGA-EJ-7782-01 3 45559536 45559536 G T LARS2 Missense_Mutation p.W729L 0.24 tolerated(0.36) benign(0.03) TCGA-EJ-7782-01 3 4847908 4847908 G A ITPR1 Missense_Mutation p.C2395Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-EJ-7782-01 3 48626076 48626076 C T COL7A1 Silent p.T862T 0.37 TCGA-EJ-7782-01 3 49759676 49759676 G A GMPPB Silent p.G252G 0.11 TCGA-EJ-7782-01 3 50312859 50312859 G A LSMEM2 5'Flank 0.29 TCGA-EJ-7782-01 3 50334626 50334626 C T NAT6 Missense_Mutation p.R112H 0.08 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 3 52526219 52526219 C T NISCH Silent p.R1412R 0.22 TCGA-EJ-7782-01 3 54930848 54930848 C T CACNA2D3 Silent p.A773A 0.36 TCGA-EJ-7782-01 3 62499360 62499360 T C CADPS Intron 0.40 TCGA-EJ-7782-01 3 73433999 73433999 C T PDZRN3 Missense_Mutation p.R573Q 0.37 deleterious(0.01) probably_damaging(0.988) TCGA-EJ-7782-01 3 9776141 9776141 G A BRPF1 Missense_Mutation p.R106H 0.40 deleterious(0.03) possibly_damaging(0.799) TCGA-EJ-7782-01 3 9825746 9825746 C T TADA3 Missense_Mutation p.A358T 0.20 tolerated(0.99) benign(0.004) TCGA-EJ-7782-01 4 104068648 104068648 C T CENPE Silent p.L1333L 0.55 TCGA-EJ-7782-01 4 106858224 106858224 C T NPNT Silent p.Y138Y 0.53 TCGA-EJ-7782-01 4 110608693 110608693 C T CCDC109B Missense_Mutation p.A319V 0.25 tolerated(0.4) benign(0) TCGA-EJ-7782-01 4 145580838 145580838 C T HHIP Missense_Mutation p.R227W 0.08 deleterious(0.02) probably_damaging(0.991) TCGA-EJ-7782-01 4 146058591 146058591 C T OTUD4 Silent p.Q1047Q 0.09 TCGA-EJ-7782-01 4 149002640 149002640 T A NR3C2 Missense_Mutation p.D937V 0.33 deleterious(0.02) probably_damaging(0.929) TCGA-EJ-7782-01 4 152053535 152053535 C T SH3D19 Missense_Mutation p.S640N 0.11 tolerated(0.22) benign(0.003) TCGA-EJ-7782-01 4 25005192 25005192 C T LGI2 Missense_Mutation p.V507M 0.16 tolerated(0.12) probably_damaging(0.957) TCGA-EJ-7782-01 4 39301676 39301676 G A RFC1 Missense_Mutation p.R926W 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 4 4239662 4239662 G A TMEM128 Silent p.C109C 0.19 TCGA-EJ-7782-01 4 44450453 44450453 C T KCTD8 Missense_Mutation p.A30T 0.44 tolerated_low_confidence(0.52) benign(0.036) TCGA-EJ-7782-01 4 52960705 52960705 C T SPATA18 Missense_Mutation p.R526W 0.09 deleterious(0) probably_damaging(0.988) TCGA-EJ-7782-01 4 57876617 57876617 A C POLR2B Silent p.R499R 0.35 TCGA-EJ-7782-01 4 648639 648639 C T PDE6B Silent p.D318D 0.06 TCGA-EJ-7782-01 4 6610853 6610853 C T MAN2B2 Missense_Mutation p.R612C 0.30 deleterious(0.04) possibly_damaging(0.849) TCGA-EJ-7782-01 4 6695686 6695686 C T S100P Silent p.G9G 0.32 TCGA-EJ-7782-01 4 69101871 69101871 T C TMPRSS11B Missense_Mutation p.K80E 0.35 tolerated(0.19) benign(0.037) TCGA-EJ-7782-01 4 81207548 81207548 G T FGF5 Missense_Mutation p.A177S 0.06 tolerated(0.62) possibly_damaging(0.609) TCGA-EJ-7782-01 4 90169157 90169157 G C GPRIN3 Missense_Mutation p.A702G 0.12 deleterious(0.01) benign(0.333) TCGA-EJ-7782-01 4 98633951 98633951 T C STPG2 Missense_Mutation p.N407D 0.57 tolerated(0.23) benign(0.046) TCGA-EJ-7782-01 5 1083970 1083970 C T SLC12A7 Missense_Mutation p.G340D 0.33 tolerated(0.58) benign(0.001) TCGA-EJ-7782-01 5 121356129 121356130 - A SRFBP1 Frame_Shift_Ins p.N236Kfs*5 0.27 TCGA-EJ-7782-01 5 129241153 129241153 C - CHSY3 Frame_Shift_Del p.N213Tfs*29 0.39 TCGA-EJ-7782-01 5 131544898 131544898 C A P4HA2 Missense_Mutation p.R279M 0.05 tolerated(0.07) probably_damaging(0.999) TCGA-EJ-7782-01 5 140176038 140176038 C T PCDHA2 Missense_Mutation p.R497W 0.09 deleterious_low_confidence(0) possibly_damaging(0.57) TCGA-EJ-7782-01 5 140203213 140203213 G A PCDHA5 Missense_Mutation p.R618H 0.20 tolerated_low_confidence(0.12) benign(0.152) TCGA-EJ-7782-01 5 140256668 140256668 G A PCDHA12 Silent p.A537A 0.34 TCGA-EJ-7782-01 5 140431844 140431844 G A PCDHB1 Silent p.T263T 0.17 TCGA-EJ-7782-01 5 140719302 140719302 C T PCDHGA2 Missense_Mutation p.T255M 0.12 tolerated_low_confidence(0.1) benign(0.063) TCGA-EJ-7782-01 5 1409833 1409833 T C SLC6A3 Intron 0.17 TCGA-EJ-7782-01 5 1422012 1422012 C A SLC6A3 Missense_Mutation p.K257N 0.21 deleterious(0) probably_damaging(0.99) TCGA-EJ-7782-01 5 151046004 151046004 G A SPARC Missense_Mutation p.R218W 0.24 deleterious(0) possibly_damaging(0.87) TCGA-EJ-7782-01 5 159344293 159344293 G - ADRA1B Frame_Shift_Del p.C128Afs*7 0.33 TCGA-EJ-7782-01 5 172195842 172195842 C T DUSP1 Missense_Mutation p.V343I 0.10 deleterious(0.02) possibly_damaging(0.812) TCGA-EJ-7782-01 5 172590779 172590779 C T BNIP1 Missense_Mutation p.S224L 0.08 deleterious(0.01) possibly_damaging(0.755) TCGA-EJ-7782-01 5 176859091 176859091 G A GRK6 Missense_Mutation p.A82T 0.35 tolerated(0.17) benign(0.052) TCGA-EJ-7782-01 5 32090466 32090466 G A PDZD2 Silent p.T2304T 0.06 TCGA-EJ-7782-01 5 43280399 43280399 C T NIM1K Silent p.H293H 0.10 TCGA-EJ-7782-01 5 5239963 5239963 C T ADAMTS16 Silent p.F816F 0.16 TCGA-EJ-7782-01 5 55212974 55212974 G T IL31RA 3'UTR 0.37 TCGA-EJ-7782-01 5 61677057 61677057 T - KIF2A Frame_Shift_Del p.I709Kfs*4 0.27 TCGA-EJ-7782-01 5 64629882 64629882 G T ADAMTS6 Silent p.P368P 0.27 TCGA-EJ-7782-01 5 73931034 73931034 A G ENC1 Missense_Mutation p.M426T 0.29 tolerated(0.65) benign(0.168) TCGA-EJ-7782-01 5 89979676 89979677 - T GPR98 Frame_Shift_Ins p.S1982Ffs*2 0.29 TCGA-EJ-7782-01 6 112463376 112463376 C A LAMA4 Missense_Mutation p.R871L 0.29 tolerated(0.11) benign(0.019) TCGA-EJ-7782-01 6 127796901 127796901 G A SOGA3 Missense_Mutation p.A757V 0.15 deleterious(0.01) benign(0.195) TCGA-EJ-7782-01 6 13644861 13644861 C T RANBP9 Missense_Mutation p.R343Q 0.28 tolerated(0.14) probably_damaging(0.978) TCGA-EJ-7782-01 6 151673127 151673127 G A AKAP12 Missense_Mutation p.A1201T 0.06 tolerated(0.17) benign(0.046) TCGA-EJ-7782-01 6 151686671 151686671 G A ZBTB2 Silent p.T510T 0.31 TCGA-EJ-7782-01 6 154727613 154727613 C T CNKSR3 Missense_Mutation p.A515T 0.06 tolerated_low_confidence(0.09) probably_damaging(0.91) TCGA-EJ-7782-01 6 165715064 165715064 C T C6orf118 Silent p.L249L 0.08 TCGA-EJ-7782-01 6 24547355 24547355 A G KIAA0319 3'UTR 0.17 TCGA-EJ-7782-01 6 26385530 26385530 C T BTN2A2 Missense_Mutation p.R128C 0.38 tolerated(0.2) benign(0.021) TCGA-EJ-7782-01 6 26428210 26428210 A - BTN2A3P RNA 0.37 TCGA-EJ-7782-01 6 30140148 30140148 C T TRIM15 3'UTR 0.15 TCGA-EJ-7782-01 6 30630690 30630690 C T DHX16 Missense_Mutation p.E476K 0.23 deleterious(0.02) unknown(0) TCGA-EJ-7782-01 6 31997464 31997464 C A C4B Silent p.A1266A 0.12 TCGA-EJ-7782-01 6 41555240 41555240 C T FOXP4 Missense_Mutation p.R288W 0.10 deleterious(0) probably_damaging(0.987) TCGA-EJ-7782-01 6 42832714 42832714 C T GLTSCR1L Missense_Mutation p.R924W 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.799) TCGA-EJ-7782-01 6 44268380 44268380 C T AARS2 Silent p.A954A 0.28 TCGA-EJ-7782-01 6 79944217 79944217 A G HMGN3 Intron 0.46 TCGA-EJ-7782-01 6 88853864 88853864 G A CNR1 Missense_Mutation p.T377M 0.10 deleterious(0.03) probably_damaging(0.997) TCGA-EJ-7782-01 6 99885247 99885247 T C USP45 Missense_Mutation p.Y730C 0.40 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 7 100218565 100218565 C T TFR2 Missense_Mutation p.R774H 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-EJ-7782-01 7 100280926 100280926 C T GIGYF1 Splice_Site p.X731_splice 0.39 TCGA-EJ-7782-01 7 100284287 100284287 G A GIGYF1 Missense_Mutation p.R227C 0.37 tolerated(0.2) unknown(0) TCGA-EJ-7782-01 7 100607859 100607859 C T MUC3A Missense_Mutation p.A669V 0.27 tolerated(0.89) benign(0.349) TCGA-EJ-7782-01 7 100685313 100685313 C T MUC17 Missense_Mutation p.T3539I 0.05 benign(0) TCGA-EJ-7782-01 7 100732487 100732487 C T TRIM56 Missense_Mutation p.R632W 0.36 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-EJ-7782-01 7 107592541 107592541 C T LAMB1 Silent p.A1069A 0.21 TCGA-EJ-7782-01 7 110763518 110763518 C T LRRN3 Silent p.N230N 0.09 TCGA-EJ-7782-01 7 112579785 112579785 G A C7orf60 Silent p.G7G 0.38 TCGA-EJ-7782-01 7 123594472 123594472 G A SPAM1 Missense_Mutation p.R283Q 0.36 tolerated(1) benign(0.002) TCGA-EJ-7782-01 7 127223060 127223060 C T GCC1 Missense_Mutation p.A446T 0.24 deleterious(0) probably_damaging(0.998) TCGA-EJ-7782-01 7 149133690 149133690 G A ZNF777 Silent p.L439L 0.32 TCGA-EJ-7782-01 7 150174667 150174667 T G GIMAP8 Missense_Mutation p.C599W 0.33 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 7 151833869 151833869 G A KMT2C 3'UTR 0.16 TCGA-EJ-7782-01 7 154684430 154684430 C T DPP6 3'UTR 0.18 TCGA-EJ-7782-01 7 18066568 18066568 T C PRPS1L1 Missense_Mutation p.K280E 0.36 tolerated(0.24) benign(0.006) TCGA-EJ-7782-01 7 23826531 23826531 T A STK31 Silent p.P825P 0.07 TCGA-EJ-7782-01 7 2565181 2565181 C T LFNG Missense_Mutation p.R239W 0.29 deleterious(0) probably_damaging(0.99) TCGA-EJ-7782-01 7 40102431 40102431 G A CDK13 Silent p.P869P 0.10 TCGA-EJ-7782-01 7 48081003 48081003 G T C7orf57 Missense_Mutation p.G43V 0.26 deleterious(0) probably_damaging(1) TCGA-EJ-7782-01 7 65705780 65705780 G A TPST1 Missense_Mutation p.R123H 0.06 deleterious(0.03) probably_damaging(0.992) TCGA-EJ-7782-01 7 72040605 72040605 C T TYW1B Missense_Mutation p.A255T 0.31 tolerated(0.12) benign(0.035) TCGA-EJ-7782-01 7 72849235 72849235 G A FZD9 Missense_Mutation p.A300T 0.39 tolerated(0.47) possibly_damaging(0.532) TCGA-EJ-7782-01 7 7645694 7645694 T C MIOS Silent p.S841S 0.34 TCGA-EJ-7782-01 7 86817443 86817444 - A DMTF1 Frame_Shift_Ins p.N415Kfs*9 0.24 TCGA-EJ-7782-01 7 91712544 91712544 G T AKAP9 Missense_Mutation p.A2741S 0.20 benign(0.044) TCGA-EJ-7782-01 7 91726086 91726086 C T AKAP9 Silent p.N3271N 0.08 TCGA-EJ-7782-01 8 101014478 101014478 T - RGS22 Frame_Shift_Del p.K914Nfs*18 0.31 TCGA-EJ-7782-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.09 TCGA-EJ-7782-01 8 105367308 105367308 C T DCSTAMP Silent p.S411S 0.38 TCGA-EJ-7782-01 8 136594256 136594256 C - KHDRBS3 Frame_Shift_Del p.P251Qfs*101 0.10 TCGA-EJ-7782-01 8 139164500 139164500 G A FAM135B Missense_Mutation p.P740S 0.26 deleterious(0.03) probably_damaging(1) TCGA-EJ-7782-01 8 144406194 144406194 G T TOP1MT Missense_Mutation p.A312E 0.31 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 8 144940328 144940328 C T EPPK1 Missense_Mutation p.R2365H 0.04 possibly_damaging(0.888) TCGA-EJ-7782-01 8 144940628 144940628 G A EPPK1 Missense_Mutation p.A2265V 0.05 probably_damaging(0.976) TCGA-EJ-7782-01 8 144941378 144941378 C - EPPK1 Frame_Shift_Del p.G2015Vfs*36 0.24 TCGA-EJ-7782-01 8 145722826 145722826 C T PPP1R16A Silent p.D83D 0.19 TCGA-EJ-7782-01 8 145831034 145831034 C T ARHGAP39 5'UTR 0.29 TCGA-EJ-7782-01 8 17400870 17400870 C T SLC7A2 Silent p.L48L 0.50 TCGA-EJ-7782-01 8 26365435 26365435 C T PNMA2 Silent p.A279A 0.10 TCGA-EJ-7782-01 8 33357854 33357854 G A TTI2 Missense_Mutation p.R472W 0.29 deleterious(0) possibly_damaging(0.776) TCGA-EJ-7782-01 8 37697698 37697698 G A GPR124 Silent p.A857A 0.28 TCGA-EJ-7782-01 8 42046568 42046568 G A PLAT Missense_Mutation p.T46M 0.05 deleterious(0.02) possibly_damaging(0.719) TCGA-EJ-7782-01 8 43147834 43147834 C G POTEA RNA 0.29 TCGA-EJ-7782-01 8 48625401 48625401 A C SPIDR Missense_Mutation p.S719R 0.26 tolerated(0.57) benign(0.188) TCGA-EJ-7782-01 8 67577666 67577666 A G VCPIP1 Missense_Mutation p.F510L 0.30 tolerated(0.06) possibly_damaging(0.621) TCGA-EJ-7782-01 8 70744219 70744219 C T SLCO5A1 Silent p.S230S 0.38 TCGA-EJ-7782-01 9 107555161 107555167 AGAGGAG - ABCA1 Frame_Shift_Del p.S1886* 0.27 TCGA-EJ-7782-01 9 112145796 112145796 G A PTPN3 Silent p.D763D 0.18 TCGA-EJ-7782-01 9 116930357 116930357 C T COL27A1 Silent p.C174C 0.27 TCGA-EJ-7782-01 9 117072950 117072950 A G COL27A1 Missense_Mutation p.E1853G 0.27 unknown(0) TCGA-EJ-7782-01 9 117129977 117129977 C A AKNA Missense_Mutation p.G525V 0.50 deleterious(0) probably_damaging(0.921) TCGA-EJ-7782-01 9 117849133 117849133 G A TNC Nonsense_Mutation p.R293* 0.15 TCGA-EJ-7782-01 9 129931001 129931001 C T RALGPS1 Silent p.S264S 0.10 TCGA-EJ-7782-01 9 131196462 131196462 C T CERCAM Missense_Mutation p.R429W 0.14 deleterious(0.05) benign(0.052) TCGA-EJ-7782-01 9 135277260 135277260 G A TTF1 Missense_Mutation p.H317Y 0.31 deleterious_low_confidence(0.01) benign(0.018) TCGA-EJ-7782-01 9 136199101 136199101 C T SURF6 Silent p.P230P 0.21 TCGA-EJ-7782-01 9 136501639 136501639 A G DBH Missense_Mutation p.Y49C 0.12 deleterious(0) probably_damaging(0.966) TCGA-EJ-7782-01 9 138657029 138657029 C - KCNT1 Frame_Shift_Del p.R398Gfs*81 0.25 TCGA-EJ-7782-01 9 26925851 26925851 C T PLAA Missense_Mutation p.D281N 0.19 tolerated(0.36) benign(0.001) TCGA-EJ-7782-01 9 72131916 72131916 G A APBA1 Missense_Mutation p.R71C 0.27 deleterious_low_confidence(0) benign(0.265) TCGA-EJ-7782-01 9 99150564 99150564 C T ZNF367 Silent p.A336A 0.10 TCGA-EJ-7782-01 X 109698589 109698589 G A RGAG1 3'UTR 0.72 TCGA-EJ-7782-01 X 129148510 129148510 G A BCORL1 Missense_Mutation p.E588K 0.74 possibly_damaging(0.832) TCGA-EJ-7782-01 X 132160413 132160413 T - USP26 Frame_Shift_Del p.G613Afs*26 0.50 TCGA-EJ-7782-01 X 134427900 134427900 C T ZNF75D Missense_Mutation p.R56H 0.08 tolerated(0.55) benign(0.003) TCGA-EJ-7782-01 X 135429592 135429592 G A GPR112 Missense_Mutation p.V1243M 0.09 deleterious(0.04) benign(0.03) TCGA-EJ-7782-01 X 13727114 13727114 C T RAB9A Silent p.C83C 0.16 TCGA-EJ-7782-01 X 142716669 142716669 G A SLITRK4 Silent p.S752S 0.21 TCGA-EJ-7782-01 X 154490316 154490316 G A RAB39B Silent p.A138A 0.64 TCGA-EJ-7782-01 X 19037719 19037719 C T GPR64 Silent p.Q236Q 0.35 TCGA-EJ-7782-01 X 23876823 23876823 G A APOO Missense_Mutation p.P139L 0.76 deleterious(0.01) benign(0.327) TCGA-EJ-7782-01 X 3002368 3002368 G A ARSF Missense_Mutation p.G164D 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-EJ-7782-01 X 3228603 3228604 - G MXRA5 Frame_Shift_Ins p.I2548Dfs*51 0.36 TCGA-EJ-7782-01 X 38020284 38020284 G - SRPX Frame_Shift_Del p.P226Qfs*32 0.48 TCGA-EJ-7782-01 X 46887491 46887491 G A JADE3 Missense_Mutation p.V225I 0.84 tolerated(1) benign(0.007) TCGA-EJ-7782-01 X 47315344 47315344 C - ZNF41 Frame_Shift_Del p.E91Kfs*35 0.44 TCGA-EJ-7782-01 X 51639838 51639838 C T MAGED1 Missense_Mutation p.P419S 0.42 deleterious_low_confidence(0.03) unknown(0) TCGA-EJ-7782-01 X 67937675 67937675 C T STARD8 Missense_Mutation p.P307S 0.21 deleterious(0) probably_damaging(0.999) TCGA-EJ-7782-01 X 70516423 70516423 G A NONO Missense_Mutation p.R220H 0.78 tolerated(0.09) benign(0.022) TCGA-EJ-7782-01 X 70613199 70613199 T C TAF1 Missense_Mutation p.S1054P 0.81 deleterious(0) probably_damaging(0.986) TCGA-EJ-7782-01 X 70823665 70823665 G A ACRC Missense_Mutation p.D180N 0.66 unknown(0) TCGA-EJ-7783-01 10 104849590 104849590 G A NT5C2 Missense_Mutation p.R509C 0.07 deleterious(0.01) benign(0.029) TCGA-EJ-7783-01 10 105361687 105361687 C A SH3PXD2A Silent p.V1068V 0.16 TCGA-EJ-7783-01 10 12148384 12148384 T G DHTKD1 Missense_Mutation p.F679C 0.06 deleterious(0.04) possibly_damaging(0.721) TCGA-EJ-7783-01 11 108121643 108121643 G - ATM Frame_Shift_Del p.W484* 0.13 TCGA-EJ-7783-01 11 92086069 92086069 C T FAT3 Missense_Mutation p.P264L 0.14 probably_damaging(0.999) TCGA-EJ-7783-01 12 112369540 112369540 C T TMEM116 Missense_Mutation p.R300H 0.05 deleterious(0.03) benign(0.048) TCGA-EJ-7783-01 12 79611355 79611355 C T SYT1 Missense_Mutation p.A19V 0.14 tolerated(0.23) possibly_damaging(0.499) TCGA-EJ-7783-01 13 67801779 67801779 G A PCDH9 Missense_Mutation p.A265V 0.14 deleterious(0) probably_damaging(0.916) TCGA-EJ-7783-01 14 103807368 103807368 C T EIF5 Silent p.D425D 0.07 TCGA-EJ-7783-01 14 63453899 63453899 G A KCNH5 Missense_Mutation p.T147M 0.22 deleterious(0.04) possibly_damaging(0.765) TCGA-EJ-7783-01 15 74467874 74467874 G A ISLR Silent p.P225P 0.10 TCGA-EJ-7783-01 15 89383254 89383254 C T ACAN Missense_Mutation p.H156Y 0.27 deleterious(0.01) unknown(0) TCGA-EJ-7783-01 16 30456579 30456579 T A SEPHS2 Missense_Mutation p.N157I 0.14 probably_damaging(0.96) TCGA-EJ-7783-01 16 67760300 67760300 A G RANBP10 3'UTR 0.17 TCGA-EJ-7783-01 17 12032526 12032526 T A MAP2K4 Missense_Mutation p.V321E 0.17 deleterious(0) possibly_damaging(0.793) TCGA-EJ-7783-01 17 39871695 39871695 C T GAST Nonsense_Mutation p.R3* 0.11 TCGA-EJ-7783-01 17 8138502 8138502 A C CTC1 Silent p.R436R 0.12 TCGA-EJ-7783-01 17 8138518 8138518 A C CTC1 Missense_Mutation p.L431R 0.15 deleterious(0) probably_damaging(0.948) TCGA-EJ-7783-01 18 33739979 33739979 G T ELP2 Splice_Site p.X628_splice 0.10 TCGA-EJ-7783-01 18 54278306 54278306 C T TXNL1 Missense_Mutation p.G253D 0.19 tolerated(0.19) benign(0.099) TCGA-EJ-7783-01 19 35718888 35718888 G A FAM187B Silent p.L232L 0.20 TCGA-EJ-7783-01 19 41512860 41512860 A G CYP2B6 Missense_Mutation p.I179V 0.06 deleterious(0.01) possibly_damaging(0.644) TCGA-EJ-7783-01 19 49207249 49207249 T C FUT2 3'UTR 0.12 TCGA-EJ-7783-01 19 54395835 54395835 C T PRKCG Silent p.N253N 0.17 TCGA-EJ-7783-01 1 109803759 109803759 A G CELSR2 Missense_Mutation p.K1352E 0.20 deleterious(0.04) possibly_damaging(0.468) TCGA-EJ-7783-01 1 115262240 115262240 G A CSDE1 Missense_Mutation p.R772C 0.07 deleterious(0) probably_damaging(0.921) TCGA-EJ-7783-01 1 180885314 180885314 A G KIAA1614 Silent p.T25T 0.15 TCGA-EJ-7783-01 1 27874814 27874814 C T AHDC1 Silent p.P1271P 0.22 TCGA-EJ-7783-01 1 51253785 51253785 C T FAF1 Missense_Mutation p.R85Q 0.25 tolerated(0.59) benign(0.129) TCGA-EJ-7783-01 20 30617620 30617620 C T CCM2L 3'UTR 0.26 TCGA-EJ-7783-01 20 46301041 46301041 C T SULF2 Missense_Mutation p.V493M 0.26 tolerated(0.36) benign(0.017) TCGA-EJ-7783-01 20 48600754 48600754 G T SNAI1 Missense_Mutation p.C159F 0.07 deleterious(0) possibly_damaging(0.893) TCGA-EJ-7783-01 22 42609619 42609619 G T TCF20 Missense_Mutation p.Q565K 0.06 probably_damaging(0.983) TCGA-EJ-7783-01 3 187447232 187447232 C T BCL6 Missense_Mutation p.A321T 0.05 tolerated(1) benign(0.002) TCGA-EJ-7783-01 4 166009709 166009709 G A TMEM192 Missense_Mutation p.P162L 0.12 deleterious(0.01) possibly_damaging(0.498) TCGA-EJ-7783-01 5 129037257 129037257 C A ADAMTS19 Missense_Mutation p.T1038N 0.14 tolerated(0.09) possibly_damaging(0.621) TCGA-EJ-7783-01 5 131630515 131630515 T A SLC22A4 Missense_Mutation p.L69Q 0.35 deleterious(0.02) benign(0.185) TCGA-EJ-7783-01 5 140208013 140208013 C A PCDHA6 Missense_Mutation p.P113T 0.08 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EJ-7783-01 5 140501672 140501672 G A PCDHB4 Missense_Mutation p.R31H 0.06 tolerated_low_confidence(0.12) benign(0.052) TCGA-EJ-7783-01 5 149755039 149755039 G A TCOF1 Silent p.E542E 0.16 TCGA-EJ-7783-01 5 94848278 94848278 C T TTC37 Silent p.L941L 0.14 TCGA-EJ-7783-01 6 136990479 136990479 C A MAP3K5 Silent p.A436A 0.18 TCGA-EJ-7783-01 6 30071498 30071498 A C TRIM31 Missense_Mutation p.S365A 0.09 tolerated_low_confidence(0.69) benign(0.01) TCGA-EJ-7783-01 7 141952337 141952337 A T PRSS58 Missense_Mutation p.N177K 0.05 deleterious(0.01) benign(0.434) TCGA-EJ-7783-01 7 35242247 35242247 G A TBX20 Missense_Mutation p.P380L 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EJ-7783-01 7 48390275 48390275 G A ABCA13 Missense_Mutation p.A3414T 0.15 benign(0.101) TCGA-EJ-7783-01 8 72987686 72987686 G A TRPA1 5'UTR 0.17 TCGA-EJ-7784-01 10 99212187 99212187 G A ZDHHC16 Missense_Mutation p.A152T 0.16 tolerated(0.3) benign(0.005) TCGA-EJ-7784-01 11 108164131 108164131 A T ATM Missense_Mutation p.H1568L 0.06 tolerated(0.72) benign(0.001) TCGA-EJ-7784-01 11 45869058 45869058 C G CRY2 Missense_Mutation p.A27G 0.27 deleterious_low_confidence(0) unknown(0) TCGA-EJ-7784-01 11 55607137 55607137 C T OR5D16 Nonsense_Mutation p.R304* 0.16 TCGA-EJ-7784-01 12 6858044 6858044 G A MLF2 Nonsense_Mutation p.R222* 0.14 TCGA-EJ-7784-01 14 21829070 21829070 T A SUPT16H Missense_Mutation p.D664V 0.11 deleterious(0) probably_damaging(0.998) TCGA-EJ-7784-01 15 43242542 43242542 C G UBR1 Missense_Mutation p.V1676L 0.05 tolerated(1) possibly_damaging(0.672) TCGA-EJ-7784-01 16 3487540 3487540 T G ZNF597 Splice_Site p.X54_splice 0.31 TCGA-EJ-7784-01 16 67859051 67859051 G T TSNAXIP1 Silent p.L176L 0.06 TCGA-EJ-7784-01 17 11535997 11535997 C A DNAH9 Missense_Mutation p.P538T 0.37 benign(0.006) TCGA-EJ-7784-01 17 1183623 1183623 G A TUSC5 Missense_Mutation p.V110I 0.07 tolerated(0.13) benign(0.269) TCGA-EJ-7784-01 17 37687433 37687433 G A CDK12 Missense_Mutation p.G1446E 0.32 probably_damaging(0.922) TCGA-EJ-7784-01 19 16688032 16688032 G T MED26 Silent p.G203G 0.06 TCGA-EJ-7784-01 19 17305678 17305678 C T MYO9B Missense_Mutation p.R1148C 0.09 deleterious(0) probably_damaging(0.999) TCGA-EJ-7784-01 19 5788166 5788166 G A DUS3L Missense_Mutation p.R322W 0.12 deleterious(0) probably_damaging(1) TCGA-EJ-7784-01 1 152733398 152733398 G A KPRP Missense_Mutation p.R445Q 0.31 tolerated(0.2) benign(0.068) TCGA-EJ-7784-01 1 158436009 158436009 C T OR10K1 Missense_Mutation p.R220C 0.20 tolerated(0.28) benign(0.009) TCGA-EJ-7784-01 1 237754210 237754210 G T RYR2 Missense_Mutation p.D1360Y 0.28 benign(0.033) TCGA-EJ-7784-01 1 45974618 45974618 G A MMACHC Missense_Mutation p.E194K 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-EJ-7784-01 1 6585881 6585881 G C NOL9 3'UTR 0.42 TCGA-EJ-7784-01 1 84880355 84880356 - T DNASE2B Frame_Shift_Ins p.Y298Lfs*61 0.24 TCGA-EJ-7784-01 2 152521933 152521933 G - NEB Frame_Shift_Del p.Q1718Sfs*6 0.33 TCGA-EJ-7784-01 2 160824131 160824132 - T PLA2R1 Frame_Shift_Ins p.V942Gfs*25 0.40 TCGA-EJ-7784-01 2 218999837 218999837 G C CXCR2 Missense_Mutation p.A105P 0.38 deleterious(0) probably_damaging(0.974) TCGA-EJ-7784-01 2 223158566 223158566 C T PAX3 Intron 0.46 TCGA-EJ-7784-01 2 242080067 242080067 C T PASK Missense_Mutation p.E100K 0.09 tolerated(0.11) benign(0.019) TCGA-EJ-7784-01 2 5833182 5833182 T A SOX11 Missense_Mutation p.M110K 0.05 deleterious(0) probably_damaging(0.998) TCGA-EJ-7784-01 2 75879653 75879653 T C MRPL19 Silent p.S115S 0.51 TCGA-EJ-7784-01 3 151163868 151163868 T C IGSF10 Missense_Mutation p.I1301V 0.48 tolerated(0.69) benign(0) TCGA-EJ-7784-01 3 168834358 168834358 C G MECOM Silent p.A311A 0.06 TCGA-EJ-7784-01 3 186299282 186299282 C T DNAJB11 Silent p.C193C 0.08 TCGA-EJ-7784-01 3 55508372 55508372 C T WNT5A Missense_Mutation p.G226D 0.13 deleterious(0) probably_damaging(1) TCGA-EJ-7784-01 4 119631282 119631282 C T METTL14 Missense_Mutation p.S399L 0.38 deleterious(0) unknown(0) TCGA-EJ-7784-01 4 4199531 4199531 C T OTOP1 Missense_Mutation p.E344K 0.36 deleterious(0.01) probably_damaging(0.981) TCGA-EJ-7784-01 5 139887388 139887388 T A ANKHD1 Silent p.G1190G 0.05 TCGA-EJ-7784-01 5 82499425 82499425 G T XRCC4 Silent p.R179R 0.10 TCGA-EJ-7784-01 6 155054985 155054985 G A SCAF8 5'UTR 0.14 TCGA-EJ-7784-01 6 24714586 24714586 G C C6orf62 Missense_Mutation p.S130C 0.16 deleterious(0) probably_damaging(0.997) TCGA-EJ-7784-01 6 34498308 34498308 G A PACSIN1 Silent p.A327A 0.10 TCGA-EJ-7784-01 6 38875871 38875872 - A DNAH8 Frame_Shift_Ins p.H2947Tfs*11 0.19 TCGA-EJ-7784-01 6 87966666 87966666 C T ZNF292 Nonsense_Mutation p.R1107* 0.09 TCGA-EJ-7784-01 7 100246363 100246363 A T ACTL6B Missense_Mutation p.V184D 0.06 deleterious(0) probably_damaging(0.938) TCGA-EJ-7784-01 7 149489766 149489766 G A SSPO RNA 0.49 TCGA-EJ-7784-01 8 28304698 28304698 G A FBXO16 Missense_Mutation p.A278V 0.07 tolerated(0.07) benign(0.078) TCGA-EJ-7784-01 9 111617256 111617256 T C ACTL7B Missense_Mutation p.T319A 0.18 tolerated(0.16) benign(0.017) TCGA-EJ-7784-01 9 125154663 125154663 G A PTGS1 Missense_Mutation p.S547N 0.06 deleterious(0) probably_damaging(0.999) TCGA-EJ-7784-01 9 40716047 40716047 G A FAM74A3 RNA 0.37 TCGA-EJ-7784-01 X 34150304 34150304 G A FAM47A Missense_Mutation p.A31V 0.37 deleterious(0.01) benign(0.063) TCGA-EJ-7785-01 10 1151161 1151161 A G WDR37 Missense_Mutation p.R353G 0.09 deleterious(0) possibly_damaging(0.879) TCGA-EJ-7785-01 10 95405746 95405746 G C PDE6C Missense_Mutation p.G626A 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-EJ-7785-01 13 100617974 100617974 G C ZIC5 Missense_Mutation p.P550R 0.18 deleterious(0) probably_damaging(0.998) TCGA-EJ-7785-01 15 42162706 42162706 G A SPTBN5 Nonsense_Mutation p.R1834* 0.14 TCGA-EJ-7785-01 15 51507372 51507372 C T CYP19A1 Missense_Mutation p.A306T 0.29 deleterious(0) probably_damaging(0.999) TCGA-EJ-7785-01 17 32957047 32957047 G - TMEM132E Frame_Shift_Del p.A364Pfs*3 0.17 TCGA-EJ-7785-01 17 54558083 54558083 G A ANKFN1 Silent p.V668V 0.09 TCGA-EJ-7785-01 17 57733350 57733350 G A CLTC Missense_Mutation p.A311T 0.21 tolerated(0.53) benign(0.009) TCGA-EJ-7785-01 19 45593388 45593388 A G GEMIN7 Missense_Mutation p.N6D 0.20 tolerated(0.53) benign(0) TCGA-EJ-7785-01 1 21205816 21205816 C G EIF4G3 Silent p.T824T 0.17 TCGA-EJ-7785-01 1 36028872 36028872 G T NCDN Silent p.G485G 0.21 TCGA-EJ-7785-01 20 34766592 34766592 G A EPB41L1 Missense_Mutation p.R163Q 0.19 deleterious(0) possibly_damaging(0.734) TCGA-EJ-7785-01 20 48098569 48098569 C T KCNB1 Missense_Mutation p.R150H 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-EJ-7785-01 22 25599797 25599797 C T CRYBB3 Missense_Mutation p.R88C 0.15 tolerated(0.06) probably_damaging(0.927) TCGA-EJ-7785-01 2 219507559 219507559 C T ZNF142 Missense_Mutation p.R1227H 0.14 deleterious(0) possibly_damaging(0.522) TCGA-EJ-7785-01 3 56627995 56627995 T A CCDC66 Missense_Mutation p.L448H 0.17 deleterious(0) probably_damaging(1) TCGA-EJ-7785-01 4 55946268 55946268 C T KDR Missense_Mutation p.G1304D 0.05 tolerated(0.16) possibly_damaging(0.666) TCGA-EJ-7785-01 6 129824263 129824263 C T LAMA2 Silent p.T2795T 0.15 TCGA-EJ-7785-01 6 17605181 17605181 A G FAM8A1 Missense_Mutation p.D293G 0.18 deleterious(0.01) probably_damaging(0.941) TCGA-EJ-7785-01 7 100681501 100681501 C T MUC17 Silent p.S2268S 0.13 TCGA-EJ-7785-01 7 107580636 107580636 C T LAMB1 Missense_Mutation p.D1187N 0.09 deleterious(0.01) benign(0.106) TCGA-EJ-7785-01 X 135485423 135485423 G A GPR112 Missense_Mutation p.A2866T 0.10 tolerated(0.09) benign(0.3) TCGA-EJ-7785-01 X 48054234 48054234 G A SSX5 Silent p.A83A 0.33 TCGA-EJ-7786-01 11 30938460 30938461 CC - DCDC1 Frame_Shift_Del p.E1137Kfs*5 0.11 TCGA-EJ-7786-01 11 55873014 55873014 T A OR8H2 Missense_Mutation p.L166M 0.04 deleterious(0) probably_damaging(0.995) TCGA-EJ-7786-01 11 6281223 6281223 G C CCKBR Missense_Mutation p.C22S 0.20 tolerated_low_confidence(0.12) benign(0.003) TCGA-EJ-7786-01 11 6977519 6977519 C T ZNF215 Silent p.S437S 0.06 TCGA-EJ-7786-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.04 deleterious(0.03) probably_damaging(0.984) TCGA-EJ-7786-01 12 122292680 122292680 C T HPD Missense_Mutation p.A115T 0.06 deleterious(0.01) possibly_damaging(0.568) TCGA-EJ-7786-01 12 12871144 12871145 - CT CDKN1B Frame_Shift_Ins p.E126Lfs*20 0.22 TCGA-EJ-7786-01 14 47530529 47530529 G A MDGA2 Missense_Mutation p.T483M 0.03 deleterious(0.01) probably_damaging(0.999) TCGA-EJ-7786-01 14 91738936 91738936 G C CCDC88C 3'UTR 0.35 TCGA-EJ-7786-01 14 93649914 93649914 T C MOAP1 Missense_Mutation p.N225S 0.24 tolerated(0.17) benign(0.169) TCGA-EJ-7786-01 15 39874483 39874483 G A THBS1 Missense_Mutation p.D53N 0.07 tolerated_low_confidence(0.08) benign(0.094) TCGA-EJ-7786-01 15 83926322 83926322 G A BNC1 Missense_Mutation p.R953W 0.05 deleterious(0) probably_damaging(0.941) TCGA-EJ-7786-01 16 67694962 67694962 T C PARD6A Silent p.T7T 0.07 TCGA-EJ-7786-01 16 70154579 70154579 T G PDPR Missense_Mutation p.S62A 0.03 tolerated(1) benign(0.006) TCGA-EJ-7786-01 19 14877064 14877064 T A EMR2 Missense_Mutation p.N206I 0.05 tolerated(0.07) benign(0.178) TCGA-EJ-7786-01 19 3527681 3527681 C G FZR1 Missense_Mutation p.P175A 0.07 deleterious(0.03) possibly_damaging(0.858) TCGA-EJ-7786-01 1 103427811 103427811 C A COL11A1 Missense_Mutation p.G1012V 0.05 unknown(0) TCGA-EJ-7786-01 1 115223006 115223006 A G AMPD1 Missense_Mutation p.V247A 0.21 deleterious(0) benign(0.359) TCGA-EJ-7786-01 1 17599863 17599863 C T PADI3 Missense_Mutation p.A359V 0.05 deleterious(0.01) possibly_damaging(0.846) TCGA-EJ-7786-01 1 185953341 185953341 G A HMCN1 Missense_Mutation p.S944N 0.04 benign(0.243) TCGA-EJ-7786-01 1 206224447 206224447 T C AVPR1B Missense_Mutation p.S3P 0.04 tolerated(0.11) benign(0.002) TCGA-EJ-7786-01 1 21040007 21040007 C G KIF17 Silent p.L140L 0.06 TCGA-EJ-7786-01 1 54284690 54284690 T C NDC1 Silent p.E219E 0.07 TCGA-EJ-7786-01 1 78194272 78194272 G A USP33 Silent p.S312S 0.10 TCGA-EJ-7786-01 21 46320321 46320321 C A ITGB2 Missense_Mutation p.G271C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EJ-7786-01 22 39385568 39385568 G A APOBEC3B Missense_Mutation p.G226S 0.30 tolerated(0.39) possibly_damaging(0.876) TCGA-EJ-7786-01 2 128262415 128262415 A G IWS1 Missense_Mutation p.M355T 0.14 tolerated_low_confidence(0.59) benign(0) TCGA-EJ-7786-01 3 49697949 49697949 C T BSN Missense_Mutation p.R2891C 0.03 unknown(0) TCGA-EJ-7786-01 5 135392372 135392372 C A TGFBI Silent p.I522I 0.22 TCGA-EJ-7786-01 6 4125412 4125412 G A C6orf201 Intron 0.12 TCGA-EJ-7786-01 6 52137119 52137119 T G MCM3 Missense_Mutation p.M648L 0.05 tolerated(0.97) benign(0.006) TCGA-EJ-7786-01 6 70447838 70447838 T C LMBRD1 Missense_Mutation p.Y211C 0.08 deleterious(0) probably_damaging(0.989) TCGA-EJ-7786-01 7 84671533 84671533 G C SEMA3D Missense_Mutation p.C310W 0.03 deleterious(0) probably_damaging(1) TCGA-EJ-7786-01 9 130495433 130495433 C T TOR2A Intron 0.12 TCGA-EJ-7786-01 9 138588485 138588485 C A SOHLH1 Missense_Mutation p.V212L 0.24 tolerated(0.34) possibly_damaging(0.621) TCGA-EJ-7786-01 X 122616696 122616696 A C GRIA3 Missense_Mutation p.Y829S 0.14 deleterious(0) probably_damaging(1) TCGA-EJ-7786-01 X 131188793 131188793 A G MST4 Silent p.E59E 0.51 TCGA-EJ-7786-01 X 14627241 14627241 G A GLRA2 Missense_Mutation p.A282T 0.05 deleterious(0.02) probably_damaging(0.99) TCGA-EJ-7786-01 X 153046771 153046771 G T SRPK3 Nonsense_Mutation p.E54* 0.16 TCGA-EJ-7788-01 10 31610331 31610331 G T ZEB1 Intron 0.29 TCGA-EJ-7788-01 11 1643175 1643175 C T KRTAP5-4 Missense_Mutation p.C50Y 0.31 deleterious_low_confidence(0) unknown(0) TCGA-EJ-7788-01 11 68747555 68747555 G A MRGPRD Missense_Mutation p.R301C 0.28 deleterious(0) possibly_damaging(0.764) TCGA-EJ-7788-01 11 75150998 75150998 G A GDPD5 Silent p.D494D 0.33 TCGA-EJ-7788-01 11 83243769 83243769 T C DLG2 Silent p.G725G 0.43 TCGA-EJ-7788-01 11 89028439 89028439 C T TYR Silent p.L499L 0.21 TCGA-EJ-7788-01 12 121712338 121712338 C A CAMKK2 5'UTR 0.16 TCGA-EJ-7788-01 12 58158697 58158697 A G CYP27B1 Missense_Mutation p.V268A 0.32 deleterious(0) benign(0.438) TCGA-EJ-7788-01 13 38158190 38158190 G T POSTN Missense_Mutation p.L387I 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-EJ-7788-01 14 105717026 105717026 G C BTBD6 3'UTR 0.28 TCGA-EJ-7788-01 14 23587880 23587880 G A CEBPE Silent p.L141L 0.39 TCGA-EJ-7788-01 15 89391173 89391173 G A ACAN Missense_Mutation p.V546M 0.12 deleterious(0.01) unknown(0) TCGA-EJ-7788-01 16 1709961 1709961 G A CRAMP1L Silent p.G770G 0.36 TCGA-EJ-7788-01 16 1709962 1709962 A G CRAMP1L Missense_Mutation p.K771E 0.37 deleterious(0) probably_damaging(0.993) TCGA-EJ-7788-01 16 49314902 49314902 C A CBLN1 Missense_Mutation p.A106S 0.35 tolerated(0.15) benign(0.123) TCGA-EJ-7788-01 16 86601138 86601138 C T FOXC2 Missense_Mutation p.A66V 0.30 deleterious(0.04) probably_damaging(0.986) TCGA-EJ-7788-01 17 79845940 79845940 C T ALYREF 3'UTR 0.11 TCGA-EJ-7788-01 18 9522268 9522268 C T RALBP1 Nonsense_Mutation p.R272* 0.11 TCGA-EJ-7788-01 19 10670558 10670558 C T KRI1 Silent p.E291E 0.27 TCGA-EJ-7788-01 19 16631784 16631784 A T C19orf44 3'UTR 0.38 TCGA-EJ-7788-01 19 16688490 16688490 T - MED26 Frame_Shift_Del p.T51Hfs*77 0.24 TCGA-EJ-7788-01 19 52498074 52498074 A T ZNF615 Missense_Mutation p.D96E 0.12 tolerated(0.06) benign(0.38) TCGA-EJ-7788-01 1 196684882 196684882 A G CFH Missense_Mutation p.D560G 0.10 tolerated(0.15) benign(0.159) TCGA-EJ-7788-01 1 236647376 236647376 G T EDARADD 3'Flank 0.07 TCGA-EJ-7788-01 1 5964711 5964711 G A NPHP4 Silent p.L703L 0.35 TCGA-EJ-7788-01 20 2097968 2097968 C T STK35 Missense_Mutation p.R517W 0.13 deleterious(0) probably_damaging(1) TCGA-EJ-7788-01 20 50244193 50244193 C A ATP9A Silent p.R597R 0.28 TCGA-EJ-7788-01 20 52779274 52779274 C T CYP24A1 Silent p.Q324Q 0.10 TCGA-EJ-7788-01 20 52779277 52779277 G T CYP24A1 Silent p.L323L 0.11 TCGA-EJ-7788-01 20 7894923 7894923 G A HAO1 Missense_Mutation p.R145W 0.23 deleterious(0.01) possibly_damaging(0.762) TCGA-EJ-7788-01 22 18778604 18778604 G A GGT3P RNA 0.29 TCGA-EJ-7788-01 22 22324625 22324625 C T TOP3B Missense_Mutation p.A180T 0.08 deleterious(0.02) possibly_damaging(0.86) TCGA-EJ-7788-01 2 32145945 32145945 C A MEMO1 Missense_Mutation p.V83L 0.30 tolerated(0.14) benign(0.011) TCGA-EJ-7788-01 2 37280709 37280709 G A HEATR5B Missense_Mutation p.A814V 0.22 tolerated(0.13) benign(0.009) TCGA-EJ-7788-01 2 69741780 69741780 C G AAK1 Missense_Mutation p.Q533H 0.09 tolerated(0.58) benign(0.001) TCGA-EJ-7788-01 3 188327155 188327155 G T LPP Silent p.T212T 0.35 TCGA-EJ-7788-01 3 52430809 52430809 A T DNAH1 Missense_Mutation p.Y3869F 0.29 benign(0.162) TCGA-EJ-7788-01 4 175897613 175897613 T C ADAM29 Missense_Mutation p.C313R 0.30 deleterious(0) probably_damaging(0.989) TCGA-EJ-7788-01 6 122779772 122779772 C T SERINC1 Missense_Mutation p.G32R 0.32 tolerated(0.07) benign(0.048) TCGA-EJ-7788-01 6 125233565 125233565 G T RP11-510H23.1 RNA 0.12 TCGA-EJ-7788-01 6 43097526 43097526 G C PTK7 Missense_Mutation p.Q151H 0.27 tolerated(0.07) possibly_damaging(0.704) TCGA-EJ-7788-01 6 84302221 84302221 G A SNAP91 Missense_Mutation p.A628V 0.24 deleterious(0.05) probably_damaging(0.97) TCGA-EJ-7788-01 7 154379675 154379675 C T DPP6 Intron 0.37 TCGA-EJ-7788-01 7 31126590 31126590 C T ADCYAP1R1 Missense_Mutation p.T286M 0.37 deleterious(0.04) benign(0.003) TCGA-EJ-7788-01 9 90252885 90252885 C T DAPK1 Silent p.F104F 0.08 TCGA-EJ-7788-01 X 140983190 140983190 C A MAGEC3 Missense_Mutation p.Q349K 0.61 tolerated(0.05) benign(0.042) TCGA-EJ-7788-01 X 30737631 30737631 G C GK Missense_Mutation p.G378R 0.66 deleterious(0) probably_damaging(1) TCGA-EJ-7789-01 10 100150769 100150769 T C PYROXD2 Missense_Mutation p.N378S 0.05 deleterious(0) probably_damaging(0.91) TCGA-EJ-7789-01 10 93287 93287 C A TUBB8 Missense_Mutation p.V349L 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.525) TCGA-EJ-7789-01 11 19735327 19735327 C A NAV2 Missense_Mutation p.P29Q 0.31 tolerated_low_confidence(0.14) benign(0.37) TCGA-EJ-7789-01 11 67079329 67079329 C T SSH3 Missense_Mutation p.H651Y 0.43 deleterious_low_confidence(0) benign(0.049) TCGA-EJ-7789-01 14 38061229 38061229 A C FOXA1 Missense_Mutation p.F254V 0.41 deleterious(0) probably_damaging(1) TCGA-EJ-7789-01 15 41272519 41272519 G T INO80 Missense_Mutation p.P1525T 0.37 tolerated_low_confidence(0.29) benign(0.004) TCGA-EJ-7789-01 15 43620821 43620821 A G LCMT2 Silent p.L623L 0.54 TCGA-EJ-7789-01 16 58198010 58198010 C A CSNK2A2 Missense_Mutation p.A340S 0.06 tolerated_low_confidence(0.79) benign(0.002) TCGA-EJ-7789-01 16 90095609 90095609 C T C16orf3 Missense_Mutation p.V48I 0.21 tolerated_low_confidence(0.84) benign(0) TCGA-EJ-7789-01 19 11978582 11978582 A - ZNF439 Frame_Shift_Del p.R234Efs*112 0.33 TCGA-EJ-7789-01 19 15276765 15276765 G A NOTCH3 Missense_Mutation p.R1834W 0.45 deleterious(0) possibly_damaging(0.863) TCGA-EJ-7789-01 19 41858655 41858655 G T TGFB1 Missense_Mutation p.P99T 0.36 tolerated(0.94) possibly_damaging(0.497) TCGA-EJ-7789-01 19 44681615 44681616 AA - ZNF226 Frame_Shift_Del p.K734Sfs*22 0.24 TCGA-EJ-7789-01 19 45445567 45445567 G T APOC4 Silent p.L11L 0.08 TCGA-EJ-7789-01 19 9057080 9057080 G T MUC16 Silent p.I10122I 0.31 TCGA-EJ-7789-01 1 110944131 110944146 AACAGATATGAGCATC - LAMTOR5 Missense_Mutation 0.29 TCGA-EJ-7789-01 1 248201938 248201938 G T OR2L2 Silent p.V123V 0.48 TCGA-EJ-7789-01 1 62941378 62941378 C G DOCK7 Missense_Mutation p.E1956D 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-EJ-7789-01 1 89319013 89319013 A T GTF2B Silent p.A278A 0.45 TCGA-EJ-7789-01 20 1277814 1277814 C T SNPH Missense_Mutation p.R26W 0.11 deleterious(0) probably_damaging(0.992) TCGA-EJ-7789-01 20 37400382 37400382 G A ACTR5 Missense_Mutation p.A583T 0.61 tolerated(0.38) unknown(0) TCGA-EJ-7789-01 2 21231311 21231311 G T APOB Missense_Mutation p.A2810E 0.26 probably_damaging(0.996) TCGA-EJ-7789-01 2 25384212 25384212 G A POMC Missense_Mutation p.T181I 0.23 deleterious(0.02) benign(0.034) TCGA-EJ-7789-01 3 153202433 153202433 A C C3orf79 Missense_Mutation p.T30P 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.702) TCGA-EJ-7789-01 3 74474079 74474079 A T CNTN3 Missense_Mutation p.F124Y 0.42 deleterious(0.01) possibly_damaging(0.642) TCGA-EJ-7789-01 4 110972803 110972803 T C ELOVL6 Silent p.G163G 0.05 TCGA-EJ-7789-01 5 13700941 13700941 T C DNAH5 Missense_Mutation p.M4511V 0.66 benign(0.072) TCGA-EJ-7789-01 6 10928671 10928671 C T SYCP2L Silent p.F492F 0.48 TCGA-EJ-7789-01 6 32411650 32411650 G A HLA-DRA Missense_Mutation p.R243H 0.46 tolerated(0.19) benign(0.021) TCGA-EJ-7789-01 6 37426394 37426394 C T CMTR1 Silent p.L262L 0.38 TCGA-EJ-7789-01 7 141672537 141672537 C G TAS2R38 Missense_Mutation p.S318T 0.08 tolerated(0.59) benign(0.05) TCGA-EJ-7789-01 7 142000833 142000833 C A TRBV2 5'UTR 0.30 TCGA-EJ-7789-01 7 3990593 3990593 G T SDK1 Missense_Mutation p.V296L 0.35 deleterious(0.02) benign(0.084) TCGA-EJ-7789-01 7 53104151 53104151 G A POM121L12 Missense_Mutation p.A263T 0.61 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-EJ-7789-01 7 91870306 91870306 C T KRIT1 Splice_Site p.X88_splice 0.29 TCGA-EJ-7789-01 8 67922953 67922953 C G PPP1R42 Silent p.V183V 0.13 TCGA-EJ-7789-01 9 34255095 34255095 G A KIF24 Missense_Mutation p.T1314M 0.14 deleterious(0.03) possibly_damaging(0.781) TCGA-EJ-7789-01 X 38016273 38016273 A T SRPX Missense_Mutation p.V322D 0.20 deleterious(0) possibly_damaging(0.613) TCGA-EJ-7791-01 10 89720811 89720812 - A PTEN Frame_Shift_Ins p.N323Kfs*2 0.13 TCGA-EJ-7791-01 12 7640092 7640092 A C CD163 Missense_Mutation p.F638C 0.08 deleterious(0) probably_damaging(0.997) TCGA-EJ-7791-01 14 24661453 24661453 C T TM9SF1 Silent p.V359V 0.06 TCGA-EJ-7791-01 14 99642167 99642167 C A BCL11B Missense_Mutation p.G336W 0.15 deleterious(0) benign(0.321) TCGA-EJ-7791-01 15 35274087 35274087 G C ZNF770 Missense_Mutation p.H517D 0.05 deleterious(0) probably_damaging(0.998) TCGA-EJ-7791-01 15 41804906 41804906 G A LTK Silent p.L120L 0.18 TCGA-EJ-7791-01 17 79207240 79207240 C A ENTHD2 Missense_Mutation p.G173V 0.11 deleterious(0.02) benign(0.115) TCGA-EJ-7791-01 19 18778497 18778497 G A KLHL26 Missense_Mutation p.R97Q 0.04 deleterious(0.01) possibly_damaging(0.836) TCGA-EJ-7791-01 19 45899117 45899117 G C PPP1R13L Missense_Mutation p.R311G 0.14 deleterious(0) possibly_damaging(0.698) TCGA-EJ-7791-01 19 7675491 7675491 C T CAMSAP3 Missense_Mutation p.P324L 0.05 deleterious(0.04) benign(0.289) TCGA-EJ-7791-01 1 193150383 193150383 G C B3GALT2 Missense_Mutation p.L104V 0.12 tolerated(0.54) benign(0) TCGA-EJ-7791-01 2 198353198 198353198 A G HSPD1 Silent p.D411D 0.06 TCGA-EJ-7791-01 3 186276229 186276229 C T TBCCD1 Missense_Mutation p.E157K 0.09 tolerated(0.47) benign(0.032) TCGA-EJ-7791-01 3 38835295 38835295 C T SCN10A Silent p.E69E 0.10 TCGA-EJ-7791-01 4 156136067 156136067 G T NPY2R Missense_Mutation p.G326C 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-7791-01 4 57244445 57244445 T G AASDH Missense_Mutation p.K179N 0.06 tolerated(0.3) benign(0.033) TCGA-EJ-7791-01 6 55128601 55128601 G A HCRTR2 Missense_Mutation p.R248H 0.09 tolerated(0.24) benign(0.12) TCGA-EJ-7791-01 7 143013473 143013473 C A CLCN1 Silent p.V56V 0.06 TCGA-EJ-7791-01 7 28527795 28527795 T C CREB5 Silent p.I2I 0.04 TCGA-EJ-7791-01 8 103298847 103298847 T C UBR5 Splice_Site p.X1653_splice 0.11 TCGA-EJ-7791-01 9 135537842 135537842 T C DDX31 Missense_Mutation p.I211V 0.16 tolerated(0.11) benign(0.071) TCGA-EJ-7791-01 9 14819364 14819364 G A FREM1 Missense_Mutation p.A805V 0.08 tolerated(1) benign(0.001) TCGA-EJ-7791-01 X 153135088 153135088 T C L1CAM Missense_Mutation p.Q385R 0.25 tolerated(0.49) benign(0.008) TCGA-EJ-7792-01 11 118471483 118471483 C A ARCN1 3'UTR 0.08 TCGA-EJ-7792-01 11 59620777 59620777 C T TCN1 Missense_Mutation p.R380H 0.18 deleterious(0) benign(0.115) TCGA-EJ-7792-01 12 108686570 108686570 C T CMKLR1 Missense_Mutation p.G57D 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-7792-01 14 20692287 20692287 G A OR11H6 Missense_Mutation p.R140Q 0.06 deleterious(0.03) benign(0.133) TCGA-EJ-7792-01 14 93412807 93412807 G C ITPK1 Missense_Mutation p.P257R 0.17 deleterious(0) probably_damaging(0.989) TCGA-EJ-7792-01 14 93649656 93649656 A C MOAP1 Missense_Mutation p.L311R 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-EJ-7792-01 19 6743805 6743805 C T TRIP10 Silent p.D200D 0.21 TCGA-EJ-7792-01 1 6270283 6270283 C G RNF207 Missense_Mutation p.S267R 0.26 tolerated(0.32) benign(0.025) TCGA-EJ-7792-01 21 42615330 42615330 T A BACE2 Missense_Mutation p.Y259N 0.17 deleterious(0) probably_damaging(0.994) TCGA-EJ-7792-01 3 44684197 44684197 C T ZNF197 Silent p.L525L 0.15 TCGA-EJ-7792-01 3 49140801 49140801 T C QARS Missense_Mutation p.I165V 0.15 tolerated(1) benign(0.029) TCGA-EJ-7792-01 5 175815433 175815433 C G NOP16 Splice_Site p.X36_splice 0.18 TCGA-EJ-7792-01 6 75860932 75860932 C T COL12A1 Missense_Mutation p.V1358M 0.24 probably_damaging(0.999) TCGA-EJ-7792-01 6 96988523 96988523 A G UFL1 Missense_Mutation p.K424R 0.16 deleterious(0.05) possibly_damaging(0.728) TCGA-EJ-7792-01 8 55542393 55542393 C T RP1 Missense_Mutation p.A1984V 0.24 tolerated(0.76) benign(0.035) TCGA-EJ-7792-01 9 112168897 112168897 G A PTPN3 Missense_Mutation p.A546V 0.19 deleterious(0) probably_damaging(0.986) TCGA-EJ-7792-01 9 20448194 20448194 T C MLLT3 Missense_Mutation p.H116R 0.18 deleterious(0.03) probably_damaging(0.95) TCGA-EJ-7792-01 9 65506469 65506469 C T SPATA31A7 Missense_Mutation p.R364Q 0.19 tolerated(0.1) benign(0) TCGA-EJ-7792-01 X 10176202 10176202 G A CLCN4 Missense_Mutation p.V321M 0.39 deleterious(0) probably_damaging(0.996) TCGA-EJ-7792-01 Y 16941822 16941822 C T NLGN4Y Missense_Mutation p.P342S 0.07 deleterious(0) probably_damaging(0.996) TCGA-EJ-7793-01 10 94405250 94405250 C T KIF11 Missense_Mutation p.H800Y 0.07 tolerated(0.41) benign(0.002) TCGA-EJ-7793-01 11 6625544 6625544 G A ILK Missense_Mutation p.A15T 0.13 tolerated(0.47) benign(0.383) TCGA-EJ-7793-01 11 8752316 8752316 C T ST5 Missense_Mutation p.R174H 0.05 deleterious(0) probably_damaging(0.996) TCGA-EJ-7793-01 12 80650233 80650233 C A OTOGL Missense_Mutation p.N559K 0.17 tolerated(0.07) benign(0.162) TCGA-EJ-7793-01 14 20482441 20482441 G C OR4K14 Missense_Mutation p.N304K 0.03 tolerated(0.27) benign(0.006) TCGA-EJ-7793-01 14 57710898 57710898 A - EXOC5 Frame_Shift_Del p.F150Lfs*7 0.18 TCGA-EJ-7793-01 1 248366998 248366998 C T OR2M3 Missense_Mutation p.P210L 0.11 deleterious(0) probably_damaging(0.982) TCGA-EJ-7793-01 20 47273617 47273617 C T PREX1 Missense_Mutation p.R695H 0.18 tolerated(0.13) benign(0.384) TCGA-EJ-7793-01 21 34931659 34931659 A C SON Missense_Mutation p.K2149Q 0.10 unknown(0) TCGA-EJ-7793-01 5 176025594 176025594 G T GPRIN1 Silent p.G414G 0.13 TCGA-EJ-7793-01 6 75855959 75855959 C A COL12A1 Missense_Mutation p.L1473F 0.12 benign(0.181) TCGA-EJ-7793-01 7 81591292 81591292 A C CACNA2D1 Missense_Mutation p.C962G 0.13 deleterious(0) probably_damaging(0.999) TCGA-EJ-7793-01 8 89128877 89128877 C T MMP16 Silent p.P314P 0.10 TCGA-EJ-7794-01 10 134040390 134040390 T C STK32C Missense_Mutation p.N185D 0.10 tolerated(0.13) benign(0.081) TCGA-EJ-7794-01 12 101381393 101381393 G T ANO4 Missense_Mutation p.D192Y 0.13 deleterious(0.02) benign(0.162) TCGA-EJ-7794-01 12 15742395 15742395 C T PTPRO Silent p.G1139G 0.04 TCGA-EJ-7794-01 12 62777707 62777707 A C USP15 Missense_Mutation p.L392F 0.20 deleterious(0) probably_damaging(1) TCGA-EJ-7794-01 15 78317633 78317633 C T TBC1D2B Missense_Mutation p.E352K 0.11 tolerated(0.91) benign(0.034) TCGA-EJ-7794-01 17 27022376 27022376 A G SUPT6H Missense_Mutation p.M1261V 0.24 tolerated(0.29) possibly_damaging(0.739) TCGA-EJ-7794-01 19 46334800 46334800 C T SYMPK Silent p.K480K 0.16 TCGA-EJ-7794-01 1 36202094 36202094 G A CLSPN 3'UTR 0.15 TCGA-EJ-7794-01 20 3005196 3005196 G A PTPRA Missense_Mutation p.E515K 0.11 tolerated(0.08) benign(0.235) TCGA-EJ-7794-01 20 50307319 50307319 G A ATP9A Missense_Mutation p.P228S 0.04 deleterious(0) probably_damaging(0.998) TCGA-EJ-7794-01 2 166229841 166229841 G A SCN2A Missense_Mutation p.R1319Q 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-EJ-7794-01 2 179637910 179637910 A G TTN Missense_Mutation p.M2594T 0.08 TCGA-EJ-7794-01 5 109124684 109124684 T - MAN2A1 Frame_Shift_Del p.L605Ffs*4 0.20 TCGA-EJ-7794-01 6 119611907 119611907 C T MAN1A1 Missense_Mutation p.E280K 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-7794-01 6 129762070 129762072 GAA - LAMA2 In_Frame_Del p.K2067del 0.21 TCGA-EJ-7794-01 8 22880193 22880193 G T TNFRSF10B Silent p.A438A 0.07 TCGA-EJ-7794-01 9 133779562 133779562 G A FIBCD1 Silent p.R425R 0.18 TCGA-EJ-7797-01 11 57506220 57506220 A G TMX2 Missense_Mutation p.I176V 0.17 tolerated(0.58) benign(0.004) TCGA-EJ-7797-01 11 92088411 92088411 G A FAT3 Missense_Mutation p.D1045N 0.06 possibly_damaging(0.576) TCGA-EJ-7797-01 12 5155075 5155075 G A KCNA5 Missense_Mutation p.V588I 0.09 tolerated_low_confidence(0.41) benign(0) TCGA-EJ-7797-01 14 105615582 105615582 A - JAG2 Frame_Shift_Del p.C560Afs*26 0.18 TCGA-EJ-7797-01 14 77935666 77935666 A G AHSA1 3'UTR 0.14 TCGA-EJ-7797-01 15 34648411 34648411 C A NUTM1 Silent p.S706S 0.20 TCGA-EJ-7797-01 16 67988583 67988583 G C SLC12A4 Missense_Mutation p.A215G 0.05 tolerated(1) benign(0.008) TCGA-EJ-7797-01 18 21492720 21492720 C T LAMA3 Nonsense_Mutation p.R2402* 0.08 TCGA-EJ-7797-01 1 159410278 159410278 C T OR10J1 Missense_Mutation p.R244W 0.10 deleterious(0.05) benign(0.089) TCGA-EJ-7797-01 1 5934619 5934619 G A NPHP4 Missense_Mutation p.A1048V 0.17 tolerated(0.1) benign(0.06) TCGA-EJ-7797-01 1 67895763 67895763 G A SERBP1 Missense_Mutation p.S74F 0.14 deleterious(0) probably_damaging(0.997) TCGA-EJ-7797-01 1 94526101 94526101 A G ABCA4 Missense_Mutation p.F718L 0.14 tolerated(0.51) benign(0.013) TCGA-EJ-7797-01 1 9931303 9931303 G A CTNNBIP1 Silent p.T43T 0.15 TCGA-EJ-7797-01 2 179592402 179592402 A C TTN Missense_Mutation p.S6635A 0.05 TCGA-EJ-7797-01 2 198950517 198950517 C T PLCL1 Missense_Mutation p.A759V 0.15 deleterious(0.02) probably_damaging(0.954) TCGA-EJ-7797-01 2 215674188 215674188 G A BARD1 Missense_Mutation p.H36Y 0.17 deleterious(0.03) benign(0.03) TCGA-EJ-7797-01 2 219735816 219735816 C T WNT6 Missense_Mutation p.R50W 0.04 deleterious(0.03) probably_damaging(0.995) TCGA-EJ-7797-01 2 231407690 231407690 C T SP100 3'UTR 0.26 TCGA-EJ-7797-01 2 39053767 39053767 G C DHX57 Missense_Mutation p.P902A 0.05 tolerated(0.24) probably_damaging(0.986) TCGA-EJ-7797-01 3 71096126 71096126 G A FOXP1 Nonsense_Mutation p.Q213* 0.08 TCGA-EJ-7797-01 3 71096127 71096127 C A FOXP1 Silent p.G212G 0.09 TCGA-EJ-7797-01 4 126242060 126242060 C G FAT4 Silent p.A1498A 0.18 TCGA-EJ-7797-01 4 5735120 5735120 C T EVC Silent p.D220D 0.17 TCGA-EJ-7797-01 4 89183862 89183862 G A PPM1K Missense_Mutation p.T335I 0.18 deleterious(0) possibly_damaging(0.719) TCGA-EJ-7797-01 4 94750937 94750937 T A ATOH1 Missense_Mutation p.V287E 0.06 deleterious(0.02) benign(0.01) TCGA-EJ-7797-01 7 154677383 154677383 A G DPP6 Missense_Mutation p.K725R 0.18 tolerated(0.45) benign(0.003) TCGA-EJ-7797-01 7 158719704 158719704 G T WDR60 Missense_Mutation p.A819S 0.13 deleterious(0.04) possibly_damaging(0.739) TCGA-EJ-7797-01 7 72409217 72409217 T G POM121 Missense_Mutation p.I190R 0.10 tolerated(0.13) benign(0.009) TCGA-EJ-7797-01 8 88885088 88885088 C T DCAF4L2 Missense_Mutation p.R371H 0.28 tolerated(0.06) benign(0.009) TCGA-EJ-7797-01 9 125673324 125673324 C T ZBTB6 Missense_Mutation p.R343Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-EJ-7797-01 9 140007905 140007905 G A DPP7 Missense_Mutation p.H177Y 0.09 deleterious(0) possibly_damaging(0.891) TCGA-EJ-7797-01 9 84607230 84607230 T C SPATA31D1 Silent p.S615S 0.05 TCGA-EJ-8468-01 12 49432198 49432198 G C KMT2D Missense_Mutation p.L2981V 0.06 possibly_damaging(0.708) TCGA-EJ-8468-01 12 54448666 54448666 C T HOXC4 Missense_Mutation p.R158C 0.12 deleterious(0) probably_damaging(1) TCGA-EJ-8468-01 14 38061623 38061623 G A FOXA1 Silent p.A122A 0.47 TCGA-EJ-8468-01 15 43821147 43821147 C A MAP1A Nonsense_Mutation p.C2492* 0.25 TCGA-EJ-8468-01 15 65041629 65041629 C T RBPMS2 Splice_Site p.X89_splice 0.22 TCGA-EJ-8468-01 15 71535425 71535425 G T THSD4 Missense_Mutation p.C301F 0.20 deleterious(0) probably_damaging(0.999) TCGA-EJ-8468-01 15 78471897 78471897 C G ACSBG1 Silent p.L493L 0.26 TCGA-EJ-8468-01 16 88598619 88598619 G A ZFPM1 Missense_Mutation p.E308K 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-EJ-8468-01 17 47696425 47696425 A G SPOP Missense_Mutation p.F133S 0.31 deleterious(0) probably_damaging(1) TCGA-EJ-8468-01 17 58529353 58529353 A G APPBP2 Silent p.G464G 0.06 TCGA-EJ-8468-01 17 61432335 61432335 C A TANC2 Silent p.T648T 0.22 TCGA-EJ-8468-01 17 78797038 78797038 A G RPTOR Intron 0.28 TCGA-EJ-8468-01 19 12501393 12501393 T C ZNF799 Missense_Mutation p.K607E 0.25 tolerated(1) benign(0.094) TCGA-EJ-8468-01 19 14877173 14877173 C T EMR2 Missense_Mutation p.G170R 0.25 deleterious(0.03) probably_damaging(0.947) TCGA-EJ-8468-01 19 17311626 17311626 C A MYO9B Missense_Mutation p.F1517L 0.26 deleterious(0.01) benign(0.082) TCGA-EJ-8468-01 19 22155727 22155727 G C ZNF208 Missense_Mutation p.N703K 0.18 tolerated(0.82) benign(0.027) TCGA-EJ-8468-01 19 47570989 47570989 C A ZC3H4 Missense_Mutation p.D846Y 0.28 unknown(0) TCGA-EJ-8468-01 19 49055463 49055463 C T SULT2B1 5'UTR 0.33 TCGA-EJ-8468-01 19 9453237 9453237 A G ZNF559 Silent p.V370V 0.08 TCGA-EJ-8468-01 1 12887550 12887550 C T PRAMEF11 Missense_Mutation p.E103K 0.21 tolerated(0.77) benign(0.046) TCGA-EJ-8468-01 1 186136032 186136032 G A HMCN1 Missense_Mutation p.G5178R 0.24 probably_damaging(0.99) TCGA-EJ-8468-01 1 39907713 39907717 AAATG - MACF1 Frame_Shift_Del p.M4198Gfs*12 0.19 TCGA-EJ-8468-01 1 89652043 89652043 A T GBP4 Missense_Mutation p.H560Q 0.17 tolerated(1) benign(0.004) TCGA-EJ-8468-01 20 34288834 34288834 G A ROMO1 3'UTR 0.33 TCGA-EJ-8468-01 22 30416351 30416351 G A MTMR3 Silent p.R901R 0.24 TCGA-EJ-8468-01 2 216964862 216964862 C T TMEM169 Missense_Mutation p.T164M 0.07 deleterious(0) probably_damaging(0.959) TCGA-EJ-8468-01 2 233323610 233323610 G A ALPI Silent p.S447S 0.21 TCGA-EJ-8468-01 4 122824123 122824123 C A TRPC3 Missense_Mutation p.V783F 0.19 deleterious(0.04) benign(0.077) TCGA-EJ-8468-01 5 98205472 98205473 - AT CHD1 Frame_Shift_Ins p.E1365Mfs*7 0.30 TCGA-EJ-8468-01 6 30884980 30884980 A T VARS2 Missense_Mutation p.R314S 0.32 deleterious(0.04) benign(0.096) TCGA-EJ-8468-01 6 9908812 9908812 A G OFCC1 Silent p.F94F 0.23 TCGA-EJ-8468-01 8 113308118 113308118 G A CSMD3 Missense_Mutation p.S2853L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EJ-8468-01 9 27948977 27948977 C T LINGO2 Missense_Mutation p.V565M 0.08 deleterious(0.03) probably_damaging(0.956) TCGA-EJ-8469-01 10 6498712 6498712 C A PRKCQ Missense_Mutation p.G524V 0.35 deleterious(0) probably_damaging(1) TCGA-EJ-8469-01 11 92086739 92086739 G A FAT3 Silent p.V487V 0.30 TCGA-EJ-8469-01 12 121435350 121435350 C T HNF1A Silent p.P461P 0.38 TCGA-EJ-8469-01 12 22065906 22065906 C T ABCC9 Missense_Mutation p.R304H 0.33 deleterious(0) probably_damaging(0.983) TCGA-EJ-8469-01 15 48788406 48788407 - A FBN1 Frame_Shift_Ins p.L771Tfs*7 0.29 TCGA-EJ-8469-01 16 1576790 1576790 C A IFT140 Missense_Mutation p.V803F 0.07 deleterious(0) probably_damaging(0.988) TCGA-EJ-8469-01 16 67037031 67037031 C T CES4A Missense_Mutation p.A250V 0.62 tolerated(0.25) benign(0.155) TCGA-EJ-8469-01 17 42340029 42340029 G A SLC4A1 Silent p.P27P 0.28 TCGA-EJ-8469-01 17 6503779 6503779 C T KIAA0753 Splice_Site p.X670_splice 0.34 TCGA-EJ-8469-01 17 76563191 76563191 C T DNAH17 Missense_Mutation p.V448M 0.54 benign(0.089) TCGA-EJ-8469-01 17 79657219 79657219 C A HGS Silent p.V141V 0.08 TCGA-EJ-8469-01 19 38852407 38852407 T G CATSPERG Missense_Mutation p.V667G 0.17 deleterious(0) possibly_damaging(0.504) TCGA-EJ-8469-01 19 46825111 46825111 G A HIF3A Missense_Mutation p.R408H 0.12 deleterious(0.02) possibly_damaging(0.79) TCGA-EJ-8469-01 1 32573690 32573690 C T KPNA6 5'UTR 0.41 TCGA-EJ-8469-01 20 2774864 2774864 A G CPXM1 Missense_Mutation p.L726P 0.05 deleterious_low_confidence(0.02) probably_damaging(0.972) TCGA-EJ-8469-01 2 179592350 179592350 A G TTN Missense_Mutation p.V6652A 0.37 TCGA-EJ-8469-01 2 228388627 228388627 G A AGFG1 Missense_Mutation p.G176S 0.11 tolerated(1) benign(0.013) TCGA-EJ-8469-01 2 88913315 88913315 T C EIF2AK3 Missense_Mutation p.N122S 0.41 tolerated(0.09) probably_damaging(0.985) TCGA-EJ-8469-01 3 183667864 183667864 G A ABCC5 Silent p.I998I 0.30 TCGA-EJ-8469-01 3 186522503 186522503 G T RFC4 5'UTR 0.05 TCGA-EJ-8469-01 3 37512575 37512575 G A ITGA9 Missense_Mutation p.R88H 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-EJ-8469-01 3 62142813 62142813 A G PTPRG Missense_Mutation p.Y252C 0.04 deleterious(0) probably_damaging(0.997) TCGA-EJ-8469-01 5 140869501 140869501 G A PCDHGC5 Missense_Mutation p.V232M 0.39 deleterious(0) probably_damaging(0.999) TCGA-EJ-8469-01 5 75490817 75490817 A G SV2C Silent p.K218K 0.37 TCGA-EJ-8469-01 6 116757925 116757925 G A DSE Missense_Mutation p.R765Q 0.04 tolerated_low_confidence(0.37) benign(0) TCGA-EJ-8469-01 7 100678305 100678305 C T MUC17 Missense_Mutation p.T1203I 0.03 unknown(0) TCGA-EJ-8469-01 8 10584117 10584117 G A SOX7 Missense_Mutation p.R152W 0.71 deleterious(0) probably_damaging(0.999) TCGA-EJ-8469-01 8 120608106 120608106 G A ENPP2 Missense_Mutation p.A370V 0.04 tolerated_low_confidence(0.13) benign(0.208) TCGA-EJ-8469-01 8 145741718 145741718 C T RECQL4 Missense_Mutation p.R262Q 0.08 tolerated(0.45) benign(0.007) TCGA-EJ-8469-01 9 33246623 33246623 G A SPINK4 Missense_Mutation p.E38K 0.04 deleterious(0.04) probably_damaging(0.955) TCGA-EJ-8469-01 9 99013718 99013718 G A HSD17B3 Silent p.N145N 0.44 TCGA-EJ-8469-01 9 99285902 99285902 G A CDC14B Missense_Mutation p.S351L 0.08 deleterious(0.02) benign(0.385) TCGA-EJ-8469-01 X 151996338 151996338 C T CETN2 3'UTR 0.84 TCGA-EJ-8469-01 X 86887270 86887270 T C KLHL4 Missense_Mutation p.M462T 0.06 deleterious(0.03) probably_damaging(0.958) TCGA-EJ-8470-01 10 101373523 101373523 G A SLC25A28 Silent p.A150A 0.20 TCGA-EJ-8470-01 10 75139867 75139867 G A ANXA7 Silent p.T359T 0.10 TCGA-EJ-8470-01 11 13443342 13443342 T C BTBD10 Missense_Mutation p.M49V 0.15 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-EJ-8470-01 12 47472525 47472525 C T AMIGO2 Nonsense_Mutation p.W87* 0.18 TCGA-EJ-8470-01 13 28919605 28919605 G - FLT1 Frame_Shift_Del p.L778Sfs*6 0.27 TCGA-EJ-8470-01 16 20952769 20952769 C A DNAH3 Nonsense_Mutation p.E3870* 0.24 TCGA-EJ-8470-01 16 4780010 4780010 C T ANKS3 Silent p.Q47Q 0.10 TCGA-EJ-8470-01 17 19641485 19641485 G A ALDH3A1 3'UTR 0.20 TCGA-EJ-8470-01 17 46136011 46136011 G C NFE2L1 Missense_Mutation p.D443H 0.24 deleterious(0) probably_damaging(0.973) TCGA-EJ-8470-01 17 63049844 63049844 T C GNA13 Missense_Mutation p.M96V 0.19 tolerated(0.16) benign(0.001) TCGA-EJ-8470-01 18 13826202 13826202 C T MC5R Silent p.Y146Y 0.03 TCGA-EJ-8470-01 19 15073138 15073138 G A SLC1A6 Missense_Mutation p.T204M 0.21 tolerated(0.07) probably_damaging(0.998) TCGA-EJ-8470-01 19 33077770 33077770 G C PDCD5 Missense_Mutation p.E89Q 0.20 deleterious(0) probably_damaging(0.966) TCGA-EJ-8470-01 19 6822285 6822285 C T VAV1 Missense_Mutation p.A168V 0.14 tolerated(0.42) possibly_damaging(0.612) TCGA-EJ-8470-01 20 2688616 2688616 C T EBF4 Silent p.D142D 0.31 TCGA-EJ-8470-01 2 204305685 204305685 G A RAPH1 Missense_Mutation p.P743L 0.10 benign(0.354) TCGA-EJ-8470-01 2 231368925 231368925 A G SP100 Missense_Mutation p.N597S 0.04 tolerated(0.18) possibly_damaging(0.801) TCGA-EJ-8470-01 3 52420237 52420237 A G DNAH1 Missense_Mutation p.N2896S 0.14 benign(0.012) TCGA-EJ-8470-01 4 47427733 47427733 C T GABRB1 Missense_Mutation p.R375W 0.04 deleterious(0) possibly_damaging(0.791) TCGA-EJ-8470-01 5 140531282 140531282 G A PCDHB6 Missense_Mutation p.A482T 0.03 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-EJ-8470-01 5 140537079 140537079 C T PCDHB17 Silent p.L501L 0.26 TCGA-EJ-8470-01 5 140563584 140563584 G A PCDHB16 Missense_Mutation p.A484T 0.18 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-EJ-8470-01 5 304319 304319 C T PDCD6 Missense_Mutation p.T64I 0.17 deleterious(0) probably_damaging(0.996) TCGA-EJ-8470-01 6 28057219 28057219 A C ZNF165 Missense_Mutation p.I477L 0.30 deleterious(0.03) possibly_damaging(0.558) TCGA-EJ-8470-01 7 114299484 114299484 G C FOXP2 Missense_Mutation p.R539S 0.21 deleterious(0) unknown(0) TCGA-EJ-8470-01 8 117783946 117783946 T A UTP23 Silent p.L205L 0.18 TCGA-EJ-8470-01 9 115962194 115962194 G C FKBP15 Missense_Mutation p.S183C 0.27 tolerated(0.2) benign(0.008) TCGA-EJ-8470-01 9 136508616 136508616 G A DBH Missense_Mutation p.V276I 0.20 tolerated(0.65) benign(0.032) TCGA-EJ-8472-01 10 103826538 103826538 A C HPS6 Missense_Mutation p.Q436P 0.15 deleterious(0.03) possibly_damaging(0.876) TCGA-EJ-8472-01 10 96827286 96827286 C A CYP2C8 Nonsense_Mutation p.G111* 0.10 TCGA-EJ-8472-01 11 1264675 1264675 C A MUC5B Missense_Mutation p.P2189T 0.67 benign(0.043) TCGA-EJ-8472-01 11 130340830 130340830 T C ADAMTS15 Missense_Mutation p.F579S 0.29 deleterious(0) probably_damaging(0.964) TCGA-EJ-8472-01 11 64787952 64787952 C T ARL2 Missense_Mutation p.S134F 0.29 deleterious(0) possibly_damaging(0.875) TCGA-EJ-8472-01 11 66084381 66084381 G A CD248 Missense_Mutation p.R40W 0.40 deleterious(0) possibly_damaging(0.745) TCGA-EJ-8472-01 12 120602289 120602289 G A GCN1L1 Missense_Mutation p.R567W 0.38 possibly_damaging(0.819) TCGA-EJ-8472-01 13 40239254 40239254 G A COG6 Missense_Mutation p.D131N 0.48 tolerated(0.06) possibly_damaging(0.805) TCGA-EJ-8472-01 14 100613165 100613165 A G DEGS2 Missense_Mutation p.F302S 0.34 deleterious(0.04) benign(0.028) TCGA-EJ-8472-01 15 100230590 100230590 G A MEF2A Missense_Mutation p.R274Q 0.45 deleterious(0) probably_damaging(0.947) TCGA-EJ-8472-01 15 38234523 38234523 C A TMCO5A Intron 0.61 TCGA-EJ-8472-01 15 54306249 54306249 C G UNC13C Silent p.T383T 0.12 TCGA-EJ-8472-01 16 51173983 51173983 C G SALL1 Missense_Mutation p.C717S 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-EJ-8472-01 16 75513511 75513511 G A CHST6 Silent p.P72P 0.53 TCGA-EJ-8472-01 17 7578253 7578253 C A TP53 Missense_Mutation p.G199V 0.34 deleterious(0) probably_damaging(1) TCGA-EJ-8472-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.39 deleterious(0) probably_damaging(0.997) TCGA-EJ-8472-01 17 8215726 8215726 G A ARHGEF15 Silent p.P123P 0.07 TCGA-EJ-8472-01 19 41626275 41626275 C T CYP2F1 Nonsense_Mutation p.R120* 0.35 TCGA-EJ-8472-01 19 42865114 42865114 C G MEGF8 Missense_Mutation p.C1825W 0.34 deleterious(0) probably_damaging(0.997) TCGA-EJ-8472-01 19 4792977 4792977 C T FEM1A Missense_Mutation p.R371C 0.49 deleterious(0) probably_damaging(1) TCGA-EJ-8472-01 1 150789283 150789283 G A ARNT Missense_Mutation p.R595W 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-EJ-8472-01 1 156563612 156563612 A G APOA1BP Intron 0.45 TCGA-EJ-8472-01 1 161326467 161326467 G A SDHC Missense_Mutation p.G81E 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-EJ-8472-01 1 196716542 196716542 G A CFH 3'UTR 0.38 TCGA-EJ-8472-01 1 209781259 209781259 G A CAMK1G Missense_Mutation p.G206S 0.31 deleterious(0.02) probably_damaging(1) TCGA-EJ-8472-01 1 223396921 223396921 C T SUSD4 Missense_Mutation p.V372M 0.26 deleterious(0.01) probably_damaging(0.923) TCGA-EJ-8472-01 1 237947932 237947932 G A RYR2 Missense_Mutation p.R4307H 0.39 benign(0.005) TCGA-EJ-8472-01 1 247921334 247921334 C T OR1C1 Silent p.A125A 0.38 TCGA-EJ-8472-01 1 67724721 67724721 C T IL23R Silent p.I600I 0.48 TCGA-EJ-8472-01 1 91818698 91818698 C G HFM1 Missense_Mutation p.D581H 0.24 tolerated(0.5) benign(0) TCGA-EJ-8472-01 20 33805802 33805802 G A AL121753.1 3'Flank 0.06 TCGA-EJ-8472-01 20 9360791 9360791 G A PLCB4 Missense_Mutation p.E279K 0.26 tolerated(0.3) benign(0.046) TCGA-EJ-8472-01 2 179593776 179593776 T C TTN Missense_Mutation p.Q6330R 0.30 TCGA-EJ-8472-01 2 241725861 241725861 G A KIF1A Missense_Mutation p.R167C 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-EJ-8472-01 3 151012286 151012286 G A GPR87 Missense_Mutation p.H250Y 0.37 tolerated(0.47) probably_damaging(0.998) TCGA-EJ-8472-01 3 49314298 49314298 T C C3orf62 Missense_Mutation p.Y3C 0.18 deleterious_low_confidence(0.05) benign(0.195) TCGA-EJ-8472-01 4 78641727 78641727 G A CNOT6L Missense_Mutation p.P509L 0.39 tolerated(0.2) benign(0.314) TCGA-EJ-8472-01 5 121776374 121776374 G A SNCAIP Silent p.S449S 0.39 TCGA-EJ-8472-01 5 123984772 123984772 C A ZNF608 Silent p.G435G 0.31 TCGA-EJ-8472-01 5 140482022 140482022 G T PCDHB3 Missense_Mutation p.G597C 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-EJ-8472-01 5 168216592 168216592 A T SLIT3 Missense_Mutation p.F351Y 0.09 deleterious(0) probably_damaging(0.977) TCGA-EJ-8472-01 5 176306459 176306459 G A UNC5A Missense_Mutation p.R778Q 0.36 tolerated(0.34) possibly_damaging(0.673) TCGA-EJ-8472-01 6 117630054 117630054 C T ROS1 Missense_Mutation p.G2158S 0.15 deleterious(0) probably_damaging(1) TCGA-EJ-8472-01 6 170175420 170175420 G T ERMARD Nonsense_Mutation p.E458* 0.35 TCGA-EJ-8472-01 6 31778497 31778497 C T HSPA1L Missense_Mutation p.R418H 0.19 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-EJ-8472-01 7 106509435 106509435 C T PIK3CG Missense_Mutation p.R477C 0.38 deleterious(0) possibly_damaging(0.505) TCGA-EJ-8472-01 8 110420309 110420309 T A PKHD1L1 Silent p.V615V 0.45 TCGA-EJ-8472-01 8 143960861 143960861 C T CYP11B1 Intron 0.39 TCGA-EJ-8472-01 8 38834065 38834065 G A HTRA4 Missense_Mutation p.G193D 0.53 tolerated(0.18) benign(0.231) TCGA-EJ-8472-01 8 67578649 67578649 T C VCPIP1 Missense_Mutation p.K182R 0.40 tolerated(0.8) benign(0.016) TCGA-EJ-8472-01 8 68123726 68123726 G A ARFGEF1 Missense_Mutation p.S1604F 0.35 deleterious(0.03) benign(0.089) TCGA-EJ-8472-01 9 114840902 114840902 G A SUSD1 Missense_Mutation p.R557C 0.26 tolerated(0.06) benign(0.002) TCGA-EJ-8472-01 9 21216869 21216869 A G IFNA16 Missense_Mutation p.Y146H 0.41 deleterious(0.01) probably_damaging(1) TCGA-EJ-8472-01 X 113965913 113965913 G A HTR2C Silent p.K82K 0.34 TCGA-EJ-8472-01 X 144906346 144906346 C T SLITRK2 Silent p.T801T 0.04 TCGA-EJ-8472-01 X 36007559 36007559 T - CXorf22 Frame_Shift_Del p.A947Hfs*3 0.45 TCGA-EJ-8474-01 10 81917453 81917453 C A ANXA11 Missense_Mutation p.D468Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-EJ-8474-01 11 26586841 26586841 C T MUC15 Missense_Mutation p.G216R 0.06 tolerated(0.33) possibly_damaging(0.503) TCGA-EJ-8474-01 11 26702725 26702725 C A SLC5A12 Missense_Mutation p.W451L 0.08 deleterious(0) probably_damaging(0.999) TCGA-EJ-8474-01 11 33581376 33581376 G A KIAA1549L Missense_Mutation p.V1016I 0.06 tolerated(0.19) probably_damaging(0.925) TCGA-EJ-8474-01 11 5686409 5686409 C T TRIM5 Nonsense_Mutation p.W371* 0.03 TCGA-EJ-8474-01 11 6048227 6048227 T C OR56A1 Silent p.K236K 0.42 TCGA-EJ-8474-01 13 95862991 95862991 G C ABCC4 Silent p.G192G 0.13 TCGA-EJ-8474-01 14 105407424 105407424 C G AHNAK2 Missense_Mutation p.E4788D 0.32 possibly_damaging(0.699) TCGA-EJ-8474-01 14 75367846 75367846 G A DLST Silent p.S379S 0.07 TCGA-EJ-8474-01 16 1278552 1278552 A T TPSB2 3'UTR 0.38 TCGA-EJ-8474-01 16 5038194 5038194 G A SEC14L5 Silent p.L86L 0.35 TCGA-EJ-8474-01 16 57116488 57116488 G T NLRC5 3'UTR 0.31 TCGA-EJ-8474-01 16 67264087 67264087 G A FHOD1 Silent p.P1032P 0.33 TCGA-EJ-8474-01 17 10216500 10216500 G A MYH13 Missense_Mutation p.R1386C 0.03 deleterious(0.01) benign(0.003) TCGA-EJ-8474-01 17 10432357 10432357 G A MYH2 Missense_Mutation p.R1132W 0.32 deleterious(0) probably_damaging(0.995) TCGA-EJ-8474-01 17 78320714 78320714 T GCTCG RNF213 Frame_Shift_Ins p.L2860Rfs*12 0.19 TCGA-EJ-8474-01 18 47108803 47108803 G A LIPG Missense_Mutation p.V370I 0.09 tolerated(0.47) possibly_damaging(0.451) TCGA-EJ-8474-01 19 12512005 12512005 G C ZNF799 5'UTR 0.35 TCGA-EJ-8474-01 19 13423557 13423557 C T CACNA1A Missense_Mutation p.E532K 0.06 possibly_damaging(0.81) TCGA-EJ-8474-01 19 33122333 33122333 G A ANKRD27 Missense_Mutation p.S395L 0.17 deleterious(0.02) possibly_damaging(0.651) TCGA-EJ-8474-01 19 38876987 38876987 A G GGN Silent p.V305V 0.09 TCGA-EJ-8474-01 19 46457064 46457064 T A NOVA2 Missense_Mutation p.T124S 0.28 tolerated(0.09) unknown(0) TCGA-EJ-8474-01 1 110592992 110592992 C T STRIP1 Silent p.C639C 0.09 TCGA-EJ-8474-01 1 152957847 152957847 G T SPRR1A Missense_Mutation p.E47D 0.07 tolerated(0.07) probably_damaging(0.973) TCGA-EJ-8474-01 1 154941890 154941890 C T SHC1 Missense_Mutation p.R177H 0.14 deleterious(0) probably_damaging(0.986) TCGA-EJ-8474-01 1 157666077 157666077 G A FCRL3 Silent p.T295T 0.09 TCGA-EJ-8474-01 1 158746588 158746588 C T OR6N2 Missense_Mutation p.V280I 0.06 tolerated(0.14) benign(0.202) TCGA-EJ-8474-01 1 29644362 29644362 G T PTPRU Missense_Mutation p.D1216Y 0.16 deleterious(0) probably_damaging(0.99) TCGA-EJ-8474-01 1 45253307 45253307 C T BEST4 Nonsense_Mutation p.W24* 0.10 TCGA-EJ-8474-01 1 62739197 62739197 C T KANK4 Missense_Mutation p.D527N 0.27 tolerated(0.18) benign(0.006) TCGA-EJ-8474-01 1 92979385 92979385 C - EVI5 Frame_Shift_Del p.G754Vfs*69 0.23 TCGA-EJ-8474-01 20 23549154 23549154 C A CST9L 5'UTR 0.32 TCGA-EJ-8474-01 20 40192693 40192693 G A CHD6 Intron 0.24 TCGA-EJ-8474-01 21 45846600 45846600 G A TRPM2 Missense_Mutation p.A1285T 0.04 tolerated(0.54) benign(0.002) TCGA-EJ-8474-01 22 47095220 47095220 G A CERK Silent p.Y311Y 0.12 TCGA-EJ-8474-01 2 167133601 167133601 G A SCN9A Silent p.R911R 0.08 TCGA-EJ-8474-01 2 19553372 19553372 C T OSR1 Silent p.P65P 0.09 TCGA-EJ-8474-01 2 207435477 207435477 C T ADAM23 Missense_Mutation p.T503M 0.11 deleterious(0.02) probably_damaging(0.939) TCGA-EJ-8474-01 2 229890607 229890607 C T PID1 Missense_Mutation p.R163H 0.04 deleterious(0) probably_damaging(0.998) TCGA-EJ-8474-01 2 27169828 27169828 G A DPYSL5 Missense_Mutation p.A554T 0.22 tolerated(0.08) probably_damaging(0.99) TCGA-EJ-8474-01 3 123456319 123456319 G T MYLK Silent p.I220I 0.04 TCGA-EJ-8474-01 3 38962717 38962717 G A SCN11A Missense_Mutation p.R248C 0.03 deleterious(0) probably_damaging(0.91) TCGA-EJ-8474-01 3 44700525 44700525 T C ZNF35 Missense_Mutation p.C224R 0.05 deleterious(0) probably_damaging(1) TCGA-EJ-8474-01 3 89259294 89259294 T G EPHA3 Missense_Mutation p.I146M 0.05 deleterious(0) probably_damaging(0.993) TCGA-EJ-8474-01 4 1348988 1348988 A G UVSSA Silent p.K377K 0.42 TCGA-EJ-8474-01 4 673714 673714 G A MYL5 Missense_Mutation p.V67I 0.38 tolerated(0.27) benign(0) TCGA-EJ-8474-01 4 68938119 68938119 T - TMPRSS11F Frame_Shift_Del p.I146Lfs*9 0.25 TCGA-EJ-8474-01 4 79792152 79792152 C T BMP2K Nonsense_Mutation p.Q483* 0.09 TCGA-EJ-8474-01 4 83280638 83280638 C A HNRNPD Nonsense_Mutation p.E149* 0.11 TCGA-EJ-8474-01 5 41005012 41005012 T C MROH2B Missense_Mutation p.E1292G 0.10 tolerated(0.06) probably_damaging(0.982) TCGA-EJ-8474-01 6 123369870 123369870 G A CLVS2 Missense_Mutation p.R223Q 0.05 tolerated(0.19) benign(0.105) TCGA-EJ-8474-01 6 128134734 128134734 G A THEMIS Missense_Mutation p.T351M 0.10 deleterious(0.01) probably_damaging(1) TCGA-EJ-8474-01 6 31544556 31544556 G A TNF Missense_Mutation p.R82Q 0.07 tolerated(0.68) benign(0.007) TCGA-EJ-8474-01 6 47776029 47776029 C T OPN5 Missense_Mutation p.A299V 0.30 deleterious(0.01) possibly_damaging(0.856) TCGA-EJ-8474-01 6 66115187 66115187 G A EYS Silent p.S312S 0.07 TCGA-EJ-8474-01 7 143826812 143826812 G A OR2A14 Missense_Mutation p.V203M 0.11 tolerated(0.09) benign(0.24) TCGA-EJ-8474-01 7 44579425 44579425 C T NPC1L1 Missense_Mutation p.V191M 0.06 tolerated(0.07) benign(0.055) TCGA-EJ-8474-01 7 91667795 91667795 A G AKAP9 Silent p.G1467G 0.05 TCGA-EJ-8474-01 8 133925308 133925308 C T TG Silent p.G1392G 0.37 TCGA-EJ-8474-01 8 145773444 145773444 G A ARHGAP39 Silent p.A342A 0.10 TCGA-EJ-8474-01 8 87423858 87423858 T G WWP1 Missense_Mutation p.N272K 0.36 tolerated(0.85) benign(0.001) TCGA-EJ-8474-01 8 89180005 89180005 C T MMP16 Missense_Mutation p.G201E 0.31 deleterious(0) probably_damaging(1) TCGA-EJ-8474-01 X 1401455 1401455 T G CSF2RA 5'Flank 0.33 TCGA-EJ-8474-01 X 37026830 37026830 C T FAM47C Missense_Mutation p.A116V 0.23 tolerated(0.12) benign(0.065) TCGA-EJ-8474-01 Y 4925416 4925416 G A PCDH11Y Silent p.S184S 0.10 TCGA-EJ-A46B-01 16 1550606 1550606 A G TELO2 Missense_Mutation p.D396G 0.10 deleterious(0.04) benign(0.134) TCGA-EJ-A46B-01 21 34841166 34841166 A G TMEM50B Silent p.R9R 0.05 TCGA-EJ-A46D-01 11 34186310 34186310 C A ABTB2 Missense_Mutation p.M637I 0.07 deleterious(0.04) benign(0.007) TCGA-EJ-A46D-01 15 48766566 48766566 C T FBN1 Missense_Mutation p.E1366K 0.09 possibly_damaging(0.782) TCGA-EJ-A46D-01 18 2567313 2567313 C T METTL4 5'UTR 0.27 TCGA-EJ-A46D-01 19 40901385 40901385 C T PRX Silent p.K958K 0.09 TCGA-EJ-A46D-01 20 47852689 47852689 G T DDX27 Missense_Mutation p.R508L 0.07 deleterious(0.02) probably_damaging(0.916) TCGA-EJ-A46D-01 22 21141285 21141285 C G SERPIND1 Missense_Mutation p.F477L 0.12 deleterious(0.01) possibly_damaging(0.742) TCGA-EJ-A46D-01 2 234527191 234527191 G T UGT1A8 Nonsense_Mutation p.G280* 0.05 TCGA-EJ-A46D-01 2 70045734 70045734 T G ANXA4 Missense_Mutation p.F211C 0.07 deleterious(0) probably_damaging(1) TCGA-EJ-A46D-01 3 45812921 45812921 C A SLC6A20 Missense_Mutation p.W241C 0.08 deleterious(0) probably_damaging(1) TCGA-EJ-A46D-01 3 50005401 50005401 T C RBM6 Silent p.Y181Y 0.10 TCGA-EJ-A46D-01 4 85758212 85758212 A G WDFY3 Missense_Mutation p.V149A 0.11 deleterious(0) benign(0.141) TCGA-EJ-A46D-01 5 140537812 140537812 C T PCDHB17 3'UTR 0.07 TCGA-EJ-A46D-01 6 143780272 143780272 G T PEX3 Nonsense_Mutation p.E42* 0.09 TCGA-EJ-A46D-01 6 87726042 87726042 G A HTR1E Silent p.T330T 0.09 TCGA-EJ-A46D-01 6 99817564 99817564 G A COQ3 Missense_Mutation p.S341F 0.12 deleterious(0.01) possibly_damaging(0.463) TCGA-EJ-A46D-01 9 2643402 2643402 C T VLDLR Missense_Mutation p.R231C 0.12 deleterious(0.03) possibly_damaging(0.453) TCGA-EJ-A46E-01 11 45274253 45274253 C T SYT13 Missense_Mutation p.G189R 0.04 tolerated(0.07) benign(0.019) TCGA-EJ-A46E-01 2 62934326 62934326 C G EHBP1 5'UTR 0.04 TCGA-EJ-A46E-01 X 76711785 76711785 A T FGF16 Missense_Mutation p.E41D 0.06 benign(0.098) TCGA-EJ-A46E-01 X 99917332 99917332 G A SRPX2 Missense_Mutation p.S108N 0.07 tolerated(1) benign(0.01) TCGA-EJ-A46F-01 10 101989238 101989238 G A CHUK Missense_Mutation p.R18W 0.17 deleterious(0) probably_damaging(0.956) TCGA-EJ-A46F-01 10 16882353 16882353 G C CUBN Nonsense_Mutation p.Y3336* 0.06 TCGA-EJ-A46F-01 10 63810670 63810670 C T ARID5B Missense_Mutation p.R253C 0.34 deleterious(0) probably_damaging(0.988) TCGA-EJ-A46F-01 11 118868962 118868962 G C CCDC84 Missense_Mutation p.G19R 0.50 tolerated(0.34) probably_damaging(0.988) TCGA-EJ-A46F-01 11 19213897 19213897 C T CSRP3 Silent p.T33T 0.05 TCGA-EJ-A46F-01 11 55065642 55065642 C A TRIM51HP RNA 0.42 TCGA-EJ-A46F-01 11 65340909 65340909 C A FAM89B Missense_Mutation p.H123N 0.09 tolerated(0.07) probably_damaging(0.922) TCGA-EJ-A46F-01 11 77930359 77930359 C T GAB2 Missense_Mutation p.V664M 0.50 tolerated(0.23) benign(0.298) TCGA-EJ-A46F-01 12 125834175 125834175 G A TMEM132B Missense_Mutation p.R77Q 0.14 tolerated(0.38) possibly_damaging(0.745) TCGA-EJ-A46F-01 12 26580952 26580952 A - ITPR2 Frame_Shift_Del p.F2280Sfs*15 0.29 TCGA-EJ-A46F-01 13 103436773 103436774 - A KDELC1 3'UTR 0.40 TCGA-EJ-A46F-01 13 23912525 23912525 C T SACS Silent p.L1830L 0.44 TCGA-EJ-A46F-01 14 42356737 42356737 G A LRFN5 Silent p.R303R 0.47 TCGA-EJ-A46F-01 14 77908979 77908979 G A VIPAS39 Nonsense_Mutation p.R220* 0.45 TCGA-EJ-A46F-01 17 15406266 15406266 C A TVP23C Missense_Mutation p.W248L 0.71 tolerated_low_confidence(0.29) benign(0.063) TCGA-EJ-A46F-01 17 48050406 48050406 G A DLX4 Intron 0.54 TCGA-EJ-A46F-01 17 7480916 7480916 G C EIF4A1 Missense_Mutation p.L266F 0.85 deleterious(0) probably_damaging(0.939) TCGA-EJ-A46F-01 19 15574887 15574887 T C RASAL3 Missense_Mutation p.N95D 0.25 tolerated(0.24) benign(0.055) TCGA-EJ-A46F-01 19 17999206 17999206 C T SLC5A5 Silent p.Y531Y 0.40 TCGA-EJ-A46F-01 19 1986928 1986928 G A BTBD2 Silent p.G439G 0.80 TCGA-EJ-A46F-01 19 40996148 40996148 G A SPTBN4 Missense_Mutation p.R163H 0.47 deleterious(0) possibly_damaging(0.786) TCGA-EJ-A46F-01 19 9058119 9058119 G C MUC16 Nonsense_Mutation p.S9776* 0.24 TCGA-EJ-A46F-01 19 9058259 9058287 AGAAGAGGAAGATCTAGTTGTTTCCACAA - MUC16 Frame_Shift_Del p.F9720Sfs*21 0.19 TCGA-EJ-A46F-01 1 152282410 152282410 C T FLG Missense_Mutation p.R1651K 0.43 benign(0.067) TCGA-EJ-A46F-01 1 196709884 196709884 G T CFH Missense_Mutation p.C973F 0.50 deleterious(0) probably_damaging(1) TCGA-EJ-A46F-01 1 203138381 203138381 C T MYBPH Silent p.K410K 0.42 TCGA-EJ-A46F-01 1 36226432 36226432 C T CLSPN Missense_Mutation p.G364S 0.43 tolerated(0.25) benign(0.002) TCGA-EJ-A46F-01 22 22322019 22322019 C A TOP3B Missense_Mutation p.A270S 0.38 tolerated(0.08) possibly_damaging(0.665) TCGA-EJ-A46F-01 22 30409441 30409441 C T MTMR3 Missense_Mutation p.R472C 0.10 deleterious(0.02) benign(0.117) TCGA-EJ-A46F-01 2 225684223 225684223 T G DOCK10 Silent p.R1069R 0.07 TCGA-EJ-A46F-01 2 231375862 231375862 A G SP100 Missense_Mutation p.N692S 0.29 tolerated(0.09) possibly_damaging(0.486) TCGA-EJ-A46F-01 3 153943759 153943759 T - ARHGEF26 Frame_Shift_Del p.L685Sfs*24 0.25 TCGA-EJ-A46F-01 3 157154782 157154782 G A PTX3 Silent p.S20S 0.52 TCGA-EJ-A46F-01 4 189064896 189064896 G C TRIML1 Intron 0.18 TCGA-EJ-A46F-01 5 130857100 130857102 AAC - RAPGEF6 In_Frame_Del p.S203_L204delinsI 0.36 TCGA-EJ-A46F-01 5 94353187 94353187 T A MCTP1 Missense_Mutation p.K241I 0.55 tolerated(0.12) benign(0.021) TCGA-EJ-A46F-01 5 94782294 94782294 G A FAM81B Missense_Mutation p.E308K 0.30 tolerated(0.08) benign(0.185) TCGA-EJ-A46F-01 6 152728304 152728304 C T SYNE1 Missense_Mutation p.D2190N 0.60 benign(0.012) TCGA-EJ-A46F-01 7 100683805 100683805 A T MUC17 Silent p.I3036I 0.52 TCGA-EJ-A46F-01 7 111503618 111503618 A T DOCK4 Silent p.A761A 0.33 TCGA-EJ-A46F-01 8 105393494 105393494 C T DPYS Missense_Mutation p.A498T 0.31 tolerated(0.39) benign(0.001) TCGA-EJ-A46F-01 8 135612748 135612748 G A ZFAT Silent p.T802T 0.06 TCGA-EJ-A46F-01 9 99697711 99697711 G A NUTM2G Missense_Mutation p.R272Q 0.07 deleterious(0.03) benign(0.093) TCGA-EJ-A46F-01 X 154020488 154020488 C T MPP1 Missense_Mutation p.A59T 0.10 tolerated(0.16) benign(0.001) TCGA-EJ-A46F-01 X 154282921 154282921 G C FUNDC2 Missense_Mutation p.G182R 0.04 deleterious(0.03) possibly_damaging(0.71) TCGA-EJ-A46G-01 11 4566999 4566999 C T OR52M1 Silent p.G193G 0.39 TCGA-EJ-A46G-01 11 49974168 49974168 C T OR4C13 Missense_Mutation p.S65F 0.10 deleterious_low_confidence(0) probably_damaging(1) TCGA-EJ-A46G-01 11 5009509 5009509 C A MMP26 Missense_Mutation p.A23D 0.44 tolerated(0.29) benign(0.003) TCGA-EJ-A46G-01 11 5153061 5153061 A G OR52A5 Missense_Mutation p.I271T 0.20 deleterious(0) possibly_damaging(0.833) TCGA-EJ-A46G-01 11 66466498 66466498 G A SPTBN2 Missense_Mutation p.R1278W 0.44 tolerated(0.21) probably_damaging(0.994) TCGA-EJ-A46G-01 11 67074410 67074410 G T SSH3 Silent p.L147L 0.21 TCGA-EJ-A46G-01 12 10165411 10165411 G A CLEC12B Missense_Mutation p.R40H 0.30 deleterious(0.02) benign(0.077) TCGA-EJ-A46G-01 12 52629059 52629059 C T KRT7 Missense_Mutation p.R149W 0.06 deleterious(0.01) benign(0.081) TCGA-EJ-A46G-01 12 53216897 53216897 G A KRT79 Missense_Mutation p.R424W 0.16 deleterious(0) probably_damaging(0.983) TCGA-EJ-A46G-01 12 59281622 59281622 A C LRIG3 Missense_Mutation p.V347G 0.33 deleterious(0) probably_damaging(0.94) TCGA-EJ-A46G-01 13 39451252 39451252 A G FREM2 Splice_Site p.X2849_splice 0.07 TCGA-EJ-A46G-01 13 39451253 39451253 G T FREM2 Splice_Site p.X2849_splice 0.07 TCGA-EJ-A46G-01 14 60574526 60574526 T G PCNXL4 Intron 0.08 TCGA-EJ-A46G-01 14 65208858 65208858 C T PLEKHG3 Missense_Mutation p.R819C 0.43 tolerated(0.17) possibly_damaging(0.707) TCGA-EJ-A46G-01 16 31072622 31072622 G T ZNF668 Missense_Mutation p.P566T 0.51 deleterious(0.01) benign(0.346) TCGA-EJ-A46G-01 16 3142301 3142301 G A ZSCAN10 Missense_Mutation p.A83V 0.24 deleterious(0.02) benign(0.115) TCGA-EJ-A46G-01 16 56398015 56398015 G A AMFR Silent p.T534T 0.40 TCGA-EJ-A46G-01 17 37619348 37619349 - T CDK12 Frame_Shift_Ins p.S343Efs*8 0.18 TCGA-EJ-A46G-01 17 37657655 37657655 C T CDK12 Missense_Mutation p.R858W 0.50 probably_damaging(0.999) TCGA-EJ-A46G-01 17 45754426 45754426 G T KPNB1 Missense_Mutation p.R679L 0.06 deleterious(0) benign(0.217) TCGA-EJ-A46G-01 17 48356274 48356274 C T TMEM92 Missense_Mutation p.R95W 0.39 deleterious(0) benign(0.365) TCGA-EJ-A46G-01 17 74922812 74922812 C T MGAT5B Missense_Mutation p.P442S 0.57 deleterious(0) probably_damaging(0.957) TCGA-EJ-A46G-01 17 78073647 78073647 G T CCDC40 3'UTR 0.45 TCGA-EJ-A46G-01 18 29218612 29218612 C A B4GALT6 Nonsense_Mutation p.E195* 0.28 TCGA-EJ-A46G-01 19 10602517 10602517 C A KEAP1 Missense_Mutation p.R354L 0.25 deleterious(0.04) benign(0.139) TCGA-EJ-A46G-01 19 11453691 11453691 G T TMEM205 Silent p.R124R 0.41 TCGA-EJ-A46G-01 19 4267640 4267640 A G CCDC94 Missense_Mutation p.K243R 0.09 tolerated(0.13) benign(0.074) TCGA-EJ-A46G-01 19 4267641 4267641 G T CCDC94 Missense_Mutation p.K243N 0.09 deleterious(0.04) probably_damaging(0.93) TCGA-EJ-A46G-01 19 44564693 44564693 G A ZNF223 Missense_Mutation p.R34Q 0.28 tolerated(0.75) benign(0.202) TCGA-EJ-A46G-01 19 53302791 53302791 A G ZNF28 3'UTR 0.33 TCGA-EJ-A46G-01 1 142713457 142713457 C T RP11-417J8.6 RNA 0.16 TCGA-EJ-A46G-01 1 152005131 152005131 G T S100A11 3'UTR 0.36 TCGA-EJ-A46G-01 1 160389317 160389317 C T VANGL2 Missense_Mutation p.R240C 0.42 deleterious(0) probably_damaging(0.963) TCGA-EJ-A46G-01 1 160394001 160394001 G A VANGL2 Silent p.Q411Q 0.35 TCGA-EJ-A46G-01 1 20517520 20517520 A G UBXN10 Missense_Mutation p.M156V 0.43 tolerated(0.39) benign(0) TCGA-EJ-A46G-01 1 216462740 216462740 T A USH2A Missense_Mutation p.E618V 0.11 probably_damaging(0.996) TCGA-EJ-A46G-01 1 6634975 6634975 C T TAS1R1 Silent p.R261R 0.10 TCGA-EJ-A46G-01 20 61525242 61525242 G A DIDO1 Silent p.T959T 0.38 TCGA-EJ-A46G-01 2 160050845 160050845 C T TANC1 Silent p.C940C 0.29 TCGA-EJ-A46G-01 2 179399093 179399093 T C TTN Silent p.K34083K 0.55 TCGA-EJ-A46G-01 2 187542007 187542007 C T ITGAV Silent p.N1045N 0.24 TCGA-EJ-A46G-01 2 189859302 189859302 C T COL3A1 Silent p.P443P 0.18 TCGA-EJ-A46G-01 2 197645246 197645246 G C GTF3C3 Intron 0.45 TCGA-EJ-A46G-01 2 227662463 227662463 T A IRS1 Missense_Mutation p.D331V 0.15 deleterious(0) possibly_damaging(0.571) TCGA-EJ-A46G-01 2 264886 264886 G A ACP1 5'UTR 0.41 TCGA-EJ-A46G-01 2 99182212 99182212 C T INPP4A Silent p.P759P 0.25 TCGA-EJ-A46G-01 3 10191575 10191575 G T VHL Missense_Mutation p.D190Y 0.27 deleterious(0) probably_damaging(0.982) TCGA-EJ-A46G-01 3 129168739 129168739 G T IFT122 Missense_Mutation p.D23Y 0.06 deleterious(0) probably_damaging(0.998) TCGA-EJ-A46G-01 3 130284217 130284217 C T COL6A6 Silent p.N347N 0.07 TCGA-EJ-A46G-01 3 13393391 13393391 C T NUP210 Silent p.R941R 0.06 TCGA-EJ-A46G-01 3 135913890 135913890 G T MSL2 Silent p.P22P 0.33 TCGA-EJ-A46G-01 3 156746095 156746095 C G LEKR1 Missense_Mutation p.N524K 0.44 deleterious(0.03) benign(0) TCGA-EJ-A46G-01 3 194081183 194081183 C T LRRC15 Missense_Mutation p.G203D 0.38 tolerated(0.14) benign(0.139) TCGA-EJ-A46G-01 3 49881269 49881269 A T TRAIP Missense_Mutation p.L125M 0.32 deleterious(0) probably_damaging(0.985) TCGA-EJ-A46G-01 4 47527619 47527619 G T ATP10D Nonsense_Mutation p.E246* 0.15 TCGA-EJ-A46G-01 5 102888022 102888022 T - NUDT12 Frame_Shift_Del p.M392Cfs*5 0.25 TCGA-EJ-A46G-01 5 43645506 43645506 A C NNT Missense_Mutation p.Q446H 0.07 deleterious(0.03) benign(0.117) TCGA-EJ-A46G-01 5 80554973 80554973 T C CKMT2 Missense_Mutation p.F305S 0.46 deleterious(0) probably_damaging(1) TCGA-EJ-A46G-01 6 109322526 109322526 A C SESN1 Missense_Mutation p.L171V 0.26 deleterious(0) possibly_damaging(0.803) TCGA-EJ-A46G-01 6 117045527 117045527 A G KPNA5 Missense_Mutation p.I330V 0.54 tolerated(0.74) probably_damaging(0.961) TCGA-EJ-A46G-01 6 131184804 131184804 C T EPB41L2 Missense_Mutation p.G962R 0.24 deleterious(0) probably_damaging(1) TCGA-EJ-A46G-01 6 16146916 16146916 T A MYLIP Silent p.R424R 0.23 TCGA-EJ-A46G-01 6 31911054 31911054 C T CFB Silent p.N318N 0.46 TCGA-EJ-A46G-01 6 46977705 46977705 T A GPR110 Missense_Mutation p.N489I 0.40 tolerated(0.14) benign(0.006) TCGA-EJ-A46G-01 8 42611140 42611140 G T CHRNA6 Nonsense_Mutation p.S401* 0.43 TCGA-EJ-A46G-01 8 48691160 48691160 C T PRKDC Missense_Mutation p.A3904T 0.39 benign(0.263) TCGA-EJ-A46G-01 8 77617577 77617577 C A ZFHX4 Silent p.T418T 0.31 TCGA-EJ-A46G-01 9 125562551 125562551 C G OR1K1 Missense_Mutation p.I50M 0.13 deleterious(0) benign(0.403) TCGA-EJ-A46G-01 X 144337212 144337212 G T SPANXN1 Missense_Mutation p.D33Y 0.16 deleterious(0.03) possibly_damaging(0.823) TCGA-EJ-A46H-01 11 75827023 75827023 T C UVRAG Missense_Mutation p.L454P 0.10 deleterious(0) probably_damaging(0.995) TCGA-EJ-A46H-01 16 27561104 27561104 C T GTF3C1 Silent p.P36P 0.12 TCGA-EJ-A46H-01 9 79635214 79635214 G A FOXB2 Missense_Mutation p.G215D 0.13 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-EJ-A46I-01 13 21417934 21417934 T A XPO4 Missense_Mutation p.H183L 0.18 deleterious(0) probably_damaging(0.997) TCGA-EJ-A46I-01 15 33941374 33941374 C T RYR3 Silent p.D1360D 0.05 TCGA-EJ-A46I-01 18 32418795 32418795 C A DTNA Intron 0.11 TCGA-EJ-A46I-01 19 1585131 1585131 G T MBD3 Missense_Mutation p.R65S 0.11 deleterious(0.02) probably_damaging(0.986) TCGA-EJ-A46I-01 19 54080131 54080131 A T ZNF331 Missense_Mutation p.N106I 0.07 tolerated(0.13) benign(0.037) TCGA-EJ-A46I-01 1 26357710 26357710 T A EXTL1 Missense_Mutation p.F397I 0.11 deleterious(0) possibly_damaging(0.848) TCGA-EJ-A46I-01 3 10413688 10413688 C A ATP2B2 Missense_Mutation p.E488D 0.08 deleterious(0) benign(0.16) TCGA-EJ-A46I-01 5 72865483 72865483 C T UTP15 Missense_Mutation p.P177L 0.10 tolerated(0.18) benign(0.052) TCGA-EJ-A46I-01 6 158093924 158093924 G A ZDHHC14 Missense_Mutation p.A413T 0.18 tolerated_low_confidence(0.51) benign(0) TCGA-EJ-A65B-01 10 115515118 115515118 A C PLEKHS1 5'UTR 0.10 TCGA-EJ-A65B-01 10 81154106 81154106 T C ZCCHC24 Missense_Mutation p.M180V 0.05 deleterious(0.02) possibly_damaging(0.857) TCGA-EJ-A65B-01 11 46798996 46798996 T C CKAP5 Missense_Mutation p.D952G 0.10 deleterious(0.01) probably_damaging(1) TCGA-EJ-A65B-01 11 55135606 55135606 C G OR4A15 Missense_Mutation p.L83V 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.807) TCGA-EJ-A65B-01 11 70221156 70221156 G T PPFIA1 Missense_Mutation p.S1091I 0.13 deleterious(0.01) benign(0.23) TCGA-EJ-A65B-01 12 130648265 130648265 G A FZD10 Missense_Mutation p.E260K 0.06 deleterious(0) probably_damaging(0.997) TCGA-EJ-A65B-01 12 40689228 40689228 G A LRRK2 Splice_Site p.X960_splice 0.20 TCGA-EJ-A65B-01 12 82746933 82746933 A G CCDC59 Silent p.C241C 0.12 TCGA-EJ-A65B-01 14 24530760 24530760 C T LRRC16B Missense_Mutation p.R787W 0.08 deleterious(0) probably_damaging(0.922) TCGA-EJ-A65B-01 15 43817087 43817087 G C MAP1A Missense_Mutation p.R1139T 0.09 benign(0.102) TCGA-EJ-A65B-01 15 60656720 60656720 C T ANXA2 Missense_Mutation p.V69M 0.10 deleterious(0) possibly_damaging(0.777) TCGA-EJ-A65B-01 16 16256866 16256866 G A ABCC6 Nonsense_Mutation p.R1164* 0.11 TCGA-EJ-A65B-01 17 42335164 42335164 G A SLC4A1 Missense_Mutation p.R432W 0.08 deleterious(0.02) benign(0.415) TCGA-EJ-A65B-01 17 78314067 78314067 A G RNF213 Missense_Mutation p.Y1967C 0.06 possibly_damaging(0.885) TCGA-EJ-A65B-01 19 22941275 22941275 T C ZNF99 Missense_Mutation p.K479R 0.12 deleterious(0.03) possibly_damaging(0.871) TCGA-EJ-A65B-01 19 39379731 39379731 G A SIRT2 Missense_Mutation p.T166M 0.05 deleterious(0) probably_damaging(0.997) TCGA-EJ-A65B-01 19 57966837 57966837 T C VN1R1 Missense_Mutation p.R340G 0.07 tolerated(0.33) benign(0.004) TCGA-EJ-A65B-01 19 57966864 57966864 G A VN1R1 Missense_Mutation p.H331Y 0.05 tolerated(0.05) probably_damaging(0.943) TCGA-EJ-A65B-01 1 235647823 235647823 G A B3GALNT2 Nonsense_Mutation p.Q124* 0.04 TCGA-EJ-A65B-01 1 24019112 24019112 A - RPL11 Frame_Shift_Del p.K8Rfs*26 0.16 TCGA-EJ-A65B-01 1 89206770 89206770 G A PKN2 Missense_Mutation p.D50N 0.11 deleterious(0.02) possibly_damaging(0.854) TCGA-EJ-A65B-01 2 100209992 100209992 C A AFF3 Missense_Mutation p.A736S 0.09 tolerated(0.71) benign(0.009) TCGA-EJ-A65B-01 2 179428058 179428058 G T TTN Missense_Mutation p.P27601T 0.11 TCGA-EJ-A65B-01 2 70187960 70187960 A T ASPRV1 Missense_Mutation p.D287E 0.14 deleterious(0.01) probably_damaging(1) TCGA-EJ-A65B-01 3 158787141 158787141 C T IQCJ 5'UTR 0.20 TCGA-EJ-A65B-01 3 37035090 37035090 C T MLH1 Missense_Mutation p.R18C 0.11 deleterious(0) probably_damaging(0.995) TCGA-EJ-A65B-01 3 37369279 37369281 AAG - GOLGA4 In_Frame_Del p.K1991del 0.09 TCGA-EJ-A65B-01 3 45527196 45527196 C T LARS2 Missense_Mutation p.P344L 0.06 deleterious(0.01) benign(0.261) TCGA-EJ-A65B-01 3 8944154 8944154 C T RAD18 Missense_Mutation p.G360R 0.08 tolerated(1) benign(0.001) TCGA-EJ-A65B-01 4 5576482 5576482 T C EVC2 Missense_Mutation p.Q1097R 0.17 tolerated(0.47) benign(0.007) TCGA-EJ-A65B-01 5 68689274 68689274 G T RAD17 Missense_Mutation p.V468L 0.08 tolerated(0.1) benign(0.082) TCGA-EJ-A65B-01 6 146125919 146125919 A C FBXO30 Silent p.G541G 0.10 TCGA-EJ-A65B-01 6 3850337 3850337 C T FAM50B Missense_Mutation p.R98W 0.08 deleterious(0) possibly_damaging(0.849) TCGA-EJ-A65B-01 7 141672669 141672669 C T TAS2R38 Missense_Mutation p.R274H 0.06 tolerated(1) benign(0) TCGA-EJ-A65B-01 7 31126609 31126609 T G ADCYAP1R1 Missense_Mutation p.D292E 0.12 tolerated(1) benign(0.136) TCGA-EJ-A65B-01 9 113170553 113170553 G T SVEP1 Missense_Mutation p.P2443T 0.06 probably_damaging(1) TCGA-EJ-A65B-01 X 128599549 128599549 C G SMARCA1 Missense_Mutation p.R993P 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-EJ-A65B-01 X 3573441 3573441 C T PRKX Nonsense_Mutation p.W116* 0.10 TCGA-EJ-A65B-01 X 39911629 39911629 C T BCOR Silent p.S1667S 0.07 TCGA-EJ-A65D-01 10 12131124 12131124 A G DHTKD1 Missense_Mutation p.N286S 0.41 deleterious(0) probably_damaging(0.996) TCGA-EJ-A65D-01 10 52834614 52834614 C - PRKG1 Frame_Shift_Del p.Q89Rfs*6 0.32 TCGA-EJ-A65D-01 10 55996666 55996666 G A PCDH15 Missense_Mutation p.T301M 0.47 deleterious(0.03) probably_damaging(0.957) TCGA-EJ-A65D-01 10 89653846 89653846 C A PTEN Missense_Mutation p.N48K 0.05 deleterious(0) probably_damaging(0.982) TCGA-EJ-A65D-01 11 1263453 1263453 G A MUC5B Silent p.T1781T 0.07 TCGA-EJ-A65D-01 11 5444079 5444079 G T OR51Q1 Missense_Mutation p.V217L 0.04 tolerated(1) benign(0.042) TCGA-EJ-A65D-01 11 55065540 55065540 C A TRIM51HP RNA 0.41 TCGA-EJ-A65D-01 12 56092320 56092320 G A ITGA7 Missense_Mutation p.R351C 0.42 deleterious(0) probably_damaging(0.979) TCGA-EJ-A65D-01 12 56515289 56515289 A G ZC3H10 Missense_Mutation p.T315A 0.47 tolerated(0.23) benign(0.068) TCGA-EJ-A65D-01 12 7531634 7531634 G A CD163L1 Nonsense_Mutation p.R771* 0.51 TCGA-EJ-A65D-01 13 20325485 20325485 C T PSPC1 Missense_Mutation p.R298K 0.05 tolerated(1) benign(0.001) TCGA-EJ-A65D-01 15 53889439 53889439 C T WDR72 Silent p.A995A 0.40 TCGA-EJ-A65D-01 15 54804028 54804028 G A UNC13C Silent p.E1819E 0.50 TCGA-EJ-A65D-01 16 3014524 3014524 G A KREMEN2 Translation_Start_Site p.M1? 0.41 deleterious_low_confidence(0) benign(0.38) TCGA-EJ-A65D-01 16 47733409 47733409 G A PHKB 3'UTR 0.48 TCGA-EJ-A65D-01 17 16843774 16843774 G A TNFRSF13B Missense_Mutation p.T166M 0.45 deleterious(0.01) probably_damaging(0.983) TCGA-EJ-A65D-01 17 35470086 35470086 C A ACACA Missense_Mutation p.W2130L 0.37 deleterious(0) possibly_damaging(0.744) TCGA-EJ-A65D-01 18 3879237 3879237 C T DLGAP1 Missense_Mutation p.A278T 0.49 deleterious(0.04) benign(0.079) TCGA-EJ-A65D-01 19 42738561 42738561 C T GSK3A Missense_Mutation p.R283H 0.05 deleterious(0) probably_damaging(0.998) TCGA-EJ-A65D-01 19 44285085 44285085 C A KCNN4 5'UTR 0.45 TCGA-EJ-A65D-01 19 49167511 49167511 A T NTN5 Missense_Mutation p.C287S 0.13 deleterious(0.04) benign(0.21) TCGA-EJ-A65D-01 1 10713951 10713952 - CTGGACTCCT CASZ1 Frame_Shift_Ins p.S721Rfs*10 0.17 TCGA-EJ-A65D-01 1 12907828 12907828 G A HNRNPCL1 Silent p.Y105Y 0.27 TCGA-EJ-A65D-01 1 156848943 156848943 C T NTRK1 Missense_Mutation p.A612V 0.30 tolerated(0.42) benign(0.032) TCGA-EJ-A65D-01 1 237947435 237947435 C T RYR2 Silent p.S4141S 0.53 TCGA-EJ-A65D-01 1 242383349 242383349 C T PLD5 Missense_Mutation p.V226M 0.05 deleterious(0) probably_damaging(0.967) TCGA-EJ-A65D-01 1 248636882 248636882 G T OR2T3 Missense_Mutation p.M77I 0.33 tolerated(0.06) benign(0.057) TCGA-EJ-A65D-01 1 45808866 45808866 G C TOE1 Missense_Mutation p.R342T 0.50 tolerated(0.25) benign(0.375) TCGA-EJ-A65D-01 1 9011714 9011714 C T CA6 Intron 0.39 TCGA-EJ-A65D-01 22 31530082 31530082 C T INPP5J Missense_Mutation p.R532W 0.50 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-EJ-A65D-01 2 233431668 233431668 G C EIF4E2 Missense_Mutation p.A169P 0.08 deleterious(0) probably_damaging(0.988) TCGA-EJ-A65D-01 3 120969598 120969598 G A STXBP5L Missense_Mutation p.D477N 0.44 deleterious(0) possibly_damaging(0.845) TCGA-EJ-A65D-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.47 tolerated(0.06) probably_damaging(0.998) TCGA-EJ-A65D-01 3 178952152 178952162 AAAAGATAACT - PIK3CA Missense_Mutation 0.36 TCGA-EJ-A65D-01 3 180359980 180359980 T A CCDC39 Missense_Mutation p.I559L 0.33 deleterious(0.01) benign(0.155) TCGA-EJ-A65D-01 3 39227360 39227360 G A XIRP1 Missense_Mutation p.R1193W 0.09 tolerated(0.22) benign(0.001) TCGA-EJ-A65D-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.30 deleterious(0) possibly_damaging(0.844) TCGA-EJ-A65D-01 3 42230557 42230557 G A TRAK1 Missense_Mutation p.D211N 0.09 deleterious(0.02) probably_damaging(0.962) TCGA-EJ-A65D-01 3 5021583 5021583 C T BHLHE40 Intron 0.39 TCGA-EJ-A65D-01 3 93646150 93646150 C T PROS1 Missense_Mutation p.E60K 0.49 deleterious(0) probably_damaging(1) TCGA-EJ-A65D-01 4 106601200 106601200 C T ARHGEF38 3'UTR 0.38 TCGA-EJ-A65D-01 5 140531513 140531513 G A PCDHB6 Missense_Mutation p.V559M 0.55 deleterious(0) probably_damaging(0.969) TCGA-EJ-A65D-01 6 100895289 100895289 G T SIM1 Missense_Mutation p.L285M 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-EJ-A65D-01 6 72967953 72967953 C T RIMS1 Missense_Mutation p.R966C 0.08 deleterious(0) probably_damaging(0.998) TCGA-EJ-A65D-01 7 82544135 82544135 C T PCLO Silent p.R4389R 0.44 TCGA-EJ-A65D-01 7 91763691 91763691 A T CYP51A1 5'UTR 0.47 TCGA-EJ-A65D-01 8 131861907 131861907 G A ADCY8 Missense_Mutation p.R785W 0.29 deleterious(0) benign(0.016) TCGA-EJ-A65D-01 8 142490102 142490102 G A MROH5 3'UTR 0.39 TCGA-EJ-A65D-01 X 49069198 49069198 G A CACNA1F Missense_Mutation p.R1302W 0.27 deleterious(0) possibly_damaging(0.869) TCGA-EJ-A65E-01 10 121411138 121411138 C T BAG3 5'UTR 0.31 TCGA-EJ-A65E-01 10 74813264 74813264 G C P4HA1 Missense_Mutation p.T183R 0.11 deleterious(0) probably_damaging(1) TCGA-EJ-A65E-01 10 86131742 86131742 A G CCSER2 Missense_Mutation p.T312A 0.05 tolerated(0.08) benign(0.063) TCGA-EJ-A65E-01 11 111625227 111625227 A C PPP2R1B Missense_Mutation p.I342R 0.40 deleterious(0) probably_damaging(0.989) TCGA-EJ-A65E-01 11 118986790 118986790 C T C2CD2L Missense_Mutation p.R650C 0.15 deleterious(0) probably_damaging(1) TCGA-EJ-A65E-01 11 56949994 56949994 C T LRRC55 Silent p.D209D 0.31 TCGA-EJ-A65E-01 11 67167115 67167115 T A PPP1CA Missense_Mutation p.K158I 0.13 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-EJ-A65E-01 12 109523652 109523652 G T USP30 Silent p.L490L 0.12 TCGA-EJ-A65E-01 12 1943629 1943629 G A LRTM2 Silent p.P285P 0.34 TCGA-EJ-A65E-01 12 51882523 51882523 G T SLC4A8 Missense_Mutation p.G776V 0.25 deleterious(0) probably_damaging(1) TCGA-EJ-A65E-01 13 33226030 33226030 T - PDS5B Frame_Shift_Del p.L69Sfs*12 0.25 TCGA-EJ-A65E-01 13 38211582 38211582 C G TRPC4 Missense_Mutation p.D803H 0.29 deleterious_low_confidence(0.02) probably_damaging(0.944) TCGA-EJ-A65E-01 14 73581030 73581030 G A RBM25 Missense_Mutation p.D810N 0.28 possibly_damaging(0.822) TCGA-EJ-A65E-01 15 48777609 48777609 G A FBN1 Missense_Mutation p.P1225L 0.20 benign(0.031) TCGA-EJ-A65E-01 16 50136206 50136206 G T HEATR3 Missense_Mutation p.D594Y 0.29 deleterious(0) probably_damaging(0.982) TCGA-EJ-A65E-01 16 71061397 71061397 A C HYDIN Intron 0.42 TCGA-EJ-A65E-01 17 27614574 27614574 T A NUFIP2 Missense_Mutation p.K146N 0.14 tolerated(0.1) possibly_damaging(0.873) TCGA-EJ-A65E-01 17 47696644 47696644 A C SPOP Missense_Mutation p.F102V 0.34 tolerated(0.11) probably_damaging(1) TCGA-EJ-A65E-01 18 28934953 28934953 G A DSG1 Missense_Mutation p.G932S 0.28 tolerated(0.18) benign(0.309) TCGA-EJ-A65E-01 19 49653359 49653359 G C PPFIA3 Silent p.R1183R 0.17 TCGA-EJ-A65E-01 19 8032460 8032460 C A ELAVL1 Silent p.A215A 0.08 TCGA-EJ-A65E-01 1 112042634 112042634 C A ADORA3 Intron 0.39 TCGA-EJ-A65E-01 1 145441198 145441198 C T TXNIP Missense_Mutation p.L386F 0.36 tolerated_low_confidence(0.62) benign(0.008) TCGA-EJ-A65E-01 1 145441200 145441200 C T TXNIP Silent p.L386L 0.35 TCGA-EJ-A65E-01 1 159283812 159283812 C G OR10J3 Missense_Mutation p.G213A 0.34 tolerated(0.51) benign(0.029) TCGA-EJ-A65E-01 1 167024285 167024285 A G GPA33 Missense_Mutation p.I252T 0.31 deleterious(0.03) benign(0.33) TCGA-EJ-A65E-01 1 1722002 1722002 C T GNB1 Silent p.T177T 0.24 TCGA-EJ-A65E-01 1 205897957 205897957 G A SLC26A9 Silent p.R317R 0.27 TCGA-EJ-A65E-01 1 62718880 62718880 G T KANK4 Silent p.G847G 0.07 TCGA-EJ-A65E-01 20 30432215 30432215 A G FOXS1 3'UTR 0.17 TCGA-EJ-A65E-01 20 60887332 60887332 C T LAMA5 Missense_Mutation p.R3134H 0.11 benign(0) TCGA-EJ-A65E-01 21 41551004 41551004 G A DSCAM Nonsense_Mutation p.Q933* 0.26 TCGA-EJ-A65E-01 22 31043073 31043073 C T SLC35E4 3'UTR 0.39 TCGA-EJ-A65E-01 22 40805725 40805725 G C SGSM3 Missense_Mutation p.V738L 0.27 deleterious(0.04) benign(0.049) TCGA-EJ-A65E-01 2 162804174 162804174 T C SLC4A10 Silent p.F734F 0.25 TCGA-EJ-A65E-01 2 26717923 26717923 C T OTOF Missense_Mutation p.E262K 0.17 deleterious(0) probably_damaging(0.999) TCGA-EJ-A65E-01 2 43625211 43625211 T C THADA Missense_Mutation p.I1376V 0.30 tolerated(1) benign(0.001) TCGA-EJ-A65E-01 3 100287665 100287665 G C TMEM45A Splice_Site p.X197_splice 0.22 TCGA-EJ-A65E-01 3 105400303 105400310 ACTTTTTT - CBLB Intron 0.23 TCGA-EJ-A65E-01 3 122552285 122552285 A C DIRC2 Missense_Mutation p.R275S 0.35 tolerated(0.18) benign(0.017) TCGA-EJ-A65E-01 5 96098120 96098120 C A ERAP1 3'UTR 0.23 TCGA-EJ-A65E-01 6 152647580 152647580 G A SYNE1 Silent p.N5048N 0.30 TCGA-EJ-A65E-01 6 158510938 158510938 A T SYNJ2 Missense_Mutation p.E1175V 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EJ-A65E-01 6 43267187 43267187 C T SLC22A7 Silent p.A153A 0.32 TCGA-EJ-A65E-01 7 103341383 103341383 C T RELN Silent p.A292A 0.16 TCGA-EJ-A65E-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.20 deleterious(0.01) possibly_damaging(0.773) TCGA-EJ-A65E-01 8 67900709 67900709 A G PPP1R42 Missense_Mutation p.I199T 0.40 deleterious(0) benign(0.053) TCGA-EJ-A65E-01 X 37660566 37660566 T A CYBB Missense_Mutation p.F288I 0.60 tolerated(0.09) benign(0.022) TCGA-EJ-A65F-01 10 102684617 102684618 - TA FAM178A Frame_Shift_Ins p.L621Nfs*2 0.23 TCGA-EJ-A65F-01 10 123970866 123970866 A T TACC2 Missense_Mutation p.E2309V 0.34 probably_damaging(1) TCGA-EJ-A65F-01 10 127730776 127730776 G A ADAM12 Intron 0.11 TCGA-EJ-A65F-01 11 13984532 13984532 G C SPON1 RNA 0.32 TCGA-EJ-A65F-01 11 18955439 18955439 G A MRGPRX1 Missense_Mutation p.A298V 0.37 tolerated(0.06) benign(0.001) TCGA-EJ-A65F-01 11 46917845 46917845 C G LRP4 Missense_Mutation p.G322R 0.31 tolerated(0.35) possibly_damaging(0.703) TCGA-EJ-A65F-01 11 6024110 6024110 A - OR56A4 Frame_Shift_Del p.F90Sfs*12 0.19 TCGA-EJ-A65F-01 11 93464181 93464184 AGAT - KIAA1731 3'Flank 0.36 TCGA-EJ-A65F-01 12 113645503 113645503 T C IQCD Missense_Mutation p.R157G 0.08 deleterious(0) probably_damaging(0.999) TCGA-EJ-A65F-01 12 117660556 117660556 C T NOS1 Silent p.L1347L 0.04 TCGA-EJ-A65F-01 12 131490521 131490521 G C GPR133 Missense_Mutation p.W420C 0.28 deleterious(0.03) probably_damaging(0.947) TCGA-EJ-A65F-01 12 133324779 133324779 A G ANKLE2 Missense_Mutation p.I329T 0.23 deleterious(0.05) benign(0.021) TCGA-EJ-A65F-01 12 25260815 25260815 C T LRMP Missense_Mutation p.L441F 0.20 tolerated(0.07) benign(0.047) TCGA-EJ-A65F-01 12 94637768 94637768 A T PLXNC1 Missense_Mutation p.L785F 0.42 deleterious(0) probably_damaging(0.98) TCGA-EJ-A65F-01 14 21162198 21162198 G C ANG 3'UTR 0.37 TCGA-EJ-A65F-01 14 23522821 23522821 C T CDH24 Silent p.E370E 0.34 TCGA-EJ-A65F-01 14 50778931 50778931 G A L2HGDH 5'UTR 0.28 TCGA-EJ-A65F-01 14 65417587 65417587 C T RAB15 Intron 0.28 TCGA-EJ-A65F-01 14 65417588 65417588 A T RAB15 Intron 0.29 TCGA-EJ-A65F-01 14 74823853 74823853 A T VRTN Missense_Mutation p.M123L 0.09 deleterious(0.04) probably_damaging(0.944) TCGA-EJ-A65F-01 14 78202288 78202288 T C SNW1 Missense_Mutation p.S234G 0.15 deleterious(0) benign(0.232) TCGA-EJ-A65F-01 14 93709033 93709033 A T BTBD7 Silent p.G995G 0.07 TCGA-EJ-A65F-01 15 102346462 102346473 TCTTCCTCGATT AAC OR4F6 In_Frame_Del p.D180_F184delinsET 0.16 TCGA-EJ-A65F-01 15 54792334 54792334 A G UNC13C Silent p.E1706E 0.45 TCGA-EJ-A65F-01 15 66821854 66821854 G A ZWILCH Silent p.L366L 0.33 TCGA-EJ-A65F-01 16 15729800 15729800 C G KIAA0430 Missense_Mutation p.E182Q 0.21 deleterious_low_confidence(0.04) probably_damaging(0.92) TCGA-EJ-A65F-01 16 53190625 53190625 C T CHD9 Silent p.V208V 0.32 TCGA-EJ-A65F-01 16 57803814 57803814 C A KIFC3 Missense_Mutation p.E331D 0.14 deleterious(0.03) benign(0.287) TCGA-EJ-A65F-01 16 919880 919880 C A LMF1 Intron 0.18 TCGA-EJ-A65F-01 17 16455883 16455885 GAA - ZNF287 In_Frame_Del p.L524del 0.24 TCGA-EJ-A65F-01 17 18651268 18651268 A T FBXW10 Missense_Mutation p.I174F 0.32 tolerated(0.72) benign(0.001) TCGA-EJ-A65F-01 17 39967427 39967427 A C LEPREL4 Missense_Mutation p.V191G 0.31 tolerated(0.21) possibly_damaging(0.474) TCGA-EJ-A65F-01 17 5266210 5266210 C T RABEP1 Missense_Mutation p.H523Y 0.28 deleterious(0.02) benign(0.253) TCGA-EJ-A65F-01 17 67270183 67270183 T A ABCA5 Missense_Mutation p.K894I 0.23 deleterious(0) possibly_damaging(0.493) TCGA-EJ-A65F-01 17 7160288 7160288 G A ELP5 Silent p.L190L 0.09 TCGA-EJ-A65F-01 17 8076775 8076775 A C TMEM107 3'Flank 0.25 TCGA-EJ-A65F-01 18 64235814 64235814 C T CDH19 Missense_Mutation p.R110Q 0.09 tolerated(0.31) benign(0.007) TCGA-EJ-A65F-01 19 10398291 10398291 G T ICAM4 Missense_Mutation p.V133F 0.32 tolerated_low_confidence(0.65) possibly_damaging(0.762) TCGA-EJ-A65F-01 19 20044389 20044389 G A ZNF93 Missense_Mutation p.A209T 0.39 tolerated(0.1) benign(0.411) TCGA-EJ-A65F-01 19 55048334 55048334 G A KIR3DX1 Missense_Mutation p.D301N 0.37 tolerated(1) benign(0.017) TCGA-EJ-A65F-01 19 56482027 56482027 G A NLRP8 Silent p.A833A 0.35 TCGA-EJ-A65F-01 1 103480069 103480069 G A COL11A1 Missense_Mutation p.R524W 0.23 probably_damaging(0.999) TCGA-EJ-A65F-01 1 114499303 114499303 C T HIPK1 Nonsense_Mutation p.R488* 0.15 TCGA-EJ-A65F-01 1 154067630 154067630 A T NUP210L Silent p.A656A 0.36 TCGA-EJ-A65F-01 1 203690539 203690539 G A ATP2B4 Splice_Site p.X938_splice 0.12 TCGA-EJ-A65F-01 1 206318331 206318331 C T CTSE Missense_Mutation p.P30L 0.07 tolerated(0.1) benign(0.002) TCGA-EJ-A65F-01 1 206858781 206858781 C G MAPKAPK2 Silent p.V69V 0.51 TCGA-EJ-A65F-01 1 207133070 207133070 A G FCAMR Silent p.L509L 0.49 TCGA-EJ-A65F-01 1 225699534 225699534 C A ENAH Missense_Mutation p.A484S 0.23 tolerated(0.49) benign(0.082) TCGA-EJ-A65F-01 1 23637294 23637295 - CCT HNRNPR In_Frame_Ins p.R521dup 0.11 TCGA-EJ-A65F-01 20 47866085 47866085 G T ZNFX1 Missense_Mutation p.T1159N 0.08 deleterious(0) probably_damaging(1) TCGA-EJ-A65F-01 20 60737905 60737905 C A SS18L1 Silent p.A158A 0.21 TCGA-EJ-A65F-01 22 18846141 18846141 G A BCRP7 RNA 0.12 TCGA-EJ-A65F-01 22 36696287 36696287 C T MYH9 Silent p.E954E 0.08 TCGA-EJ-A65F-01 22 42377716 42377716 G A SEPT3 Silent p.A26A 0.39 TCGA-EJ-A65F-01 2 121748220 121748220 A T GLI2 Missense_Mutation p.E1577V 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-EJ-A65F-01 2 152486104 152486104 A T NEB Missense_Mutation p.S3260R 0.25 possibly_damaging(0.703) TCGA-EJ-A65F-01 2 159166039 159166039 G T CCDC148 Missense_Mutation p.T339K 0.44 deleterious(0) possibly_damaging(0.895) TCGA-EJ-A65F-01 2 160181377 160181377 C T BAZ2B Missense_Mutation p.V2100I 0.43 benign(0.265) TCGA-EJ-A65F-01 2 166621453 166621453 T G GALNT3 Missense_Mutation p.Y210S 0.32 tolerated(0.07) possibly_damaging(0.816) TCGA-EJ-A65F-01 2 179428723 179428723 A C TTN Missense_Mutation p.V27379G 0.23 TCGA-EJ-A65F-01 2 196756423 196756423 C A DNAH7 Missense_Mutation p.D1668Y 0.08 deleterious(0) probably_damaging(1) TCGA-EJ-A65F-01 2 80136846 80136846 C T CTNNA2 Missense_Mutation p.R327W 0.20 deleterious(0) probably_damaging(0.982) TCGA-EJ-A65F-01 2 99779276 99779276 C T LIPT1 Missense_Mutation p.H286Y 0.12 deleterious(0.01) benign(0.05) TCGA-EJ-A65F-01 3 183979033 183979033 C A CAMK2N2 Missense_Mutation p.R14L 0.11 tolerated_low_confidence(0.16) benign(0.019) TCGA-EJ-A65F-01 3 194117793 194117793 A C GP5 Missense_Mutation p.F407V 0.36 deleterious(0) probably_damaging(0.998) TCGA-EJ-A65F-01 3 26751671 26751671 G C LRRC3B Missense_Mutation p.V170L 0.26 deleterious(0.03) benign(0.057) TCGA-EJ-A65F-01 3 54919587 54919587 T A CACNA2D3 Missense_Mutation p.L677Q 0.41 deleterious(0.05) possibly_damaging(0.794) TCGA-EJ-A65F-01 4 104577479 104577479 G A TACR3 Silent p.L254L 0.34 TCGA-EJ-A65F-01 4 123534028 123534028 C T IL21 Missense_Mutation p.R139K 0.50 tolerated(0.14) benign(0.273) TCGA-EJ-A65F-01 4 166238998 166238998 C G KLHL2 Missense_Mutation p.L548V 0.04 deleterious(0.02) benign(0.032) TCGA-EJ-A65F-01 5 156734848 156734848 T G CYFIP2 Missense_Mutation p.L266R 0.20 deleterious(0) probably_damaging(0.933) TCGA-EJ-A65F-01 5 176799119 176799119 G A RGS14 3'UTR 0.06 TCGA-EJ-A65F-01 5 76003079 76003079 G C IQGAP2 Missense_Mutation p.V1557L 0.33 deleterious(0) benign(0.311) TCGA-EJ-A65F-01 6 4935754 4935754 T C CDYL Missense_Mutation p.S233P 0.23 tolerated(0.08) benign(0.043) TCGA-EJ-A65F-01 6 7583503 7583503 A G DSP Missense_Mutation p.E2003G 0.40 probably_damaging(0.993) TCGA-EJ-A65F-01 6 93953242 93953242 C T EPHA7 Missense_Mutation p.G967R 0.09 deleterious(0) probably_damaging(1) TCGA-EJ-A65F-01 7 22533125 22533125 C T STEAP1B Missense_Mutation p.V139I 0.07 tolerated(0.14) benign(0.136) TCGA-EJ-A65F-01 7 30821758 30821758 G C FAM188B Missense_Mutation p.V117L 0.28 tolerated(0.1) benign(0.345) TCGA-EJ-A65F-01 8 110980473 110980473 T A KCNV1 Missense_Mutation p.E449D 0.15 tolerated(0.12) benign(0.007) TCGA-EJ-A65F-01 8 124195408 124195408 C A FAM83A Silent p.T104T 0.20 TCGA-EJ-A65F-01 8 133036907 133036907 G T OC90 Missense_Mutation p.P419T 0.32 deleterious(0.01) benign(0.19) TCGA-EJ-A65F-01 8 61734470 61734470 C T CHD7 Missense_Mutation p.P940L 0.26 probably_damaging(0.992) TCGA-EJ-A65F-01 8 70585422 70585422 G A SLCO5A1 Silent p.A743A 0.28 TCGA-EJ-A65F-01 9 104432660 104432660 C T GRIN3A Nonsense_Mutation p.W678* 0.25 TCGA-EJ-A65F-01 9 116825038 116825054 TCTGCGGGGGAGAGAAA - AMBP Splice_Site p.X202_splice 0.23 TCGA-EJ-A65F-01 9 123586854 123586854 G C PSMD5 Missense_Mutation p.D308E 0.06 deleterious(0.04) probably_damaging(0.992) TCGA-EJ-A65F-01 9 125751730 125751730 C T RABGAP1 Missense_Mutation p.R249W 0.22 deleterious(0) probably_damaging(0.998) TCGA-EJ-A65F-01 9 16419581 16419581 G C BNC2 Missense_Mutation p.D902E 0.37 tolerated(0.24) probably_damaging(0.967) TCGA-EJ-A65F-01 9 34611074 34611074 C G RPP25L Missense_Mutation p.V74L 0.14 tolerated(0.79) benign(0.005) TCGA-EJ-A65F-01 9 35382355 35382355 C G UNC13B Missense_Mutation p.H804D 0.25 deleterious(0) benign(0.013) TCGA-EJ-A65F-01 9 37740677 37740677 T A FRMPD1 Missense_Mutation p.Y718N 0.46 tolerated(0.31) benign(0) TCGA-EJ-A65F-01 X 117895121 117895121 A G IL13RA1 Missense_Mutation p.I233V 0.80 tolerated(0.07) benign(0.014) TCGA-EJ-A65F-01 X 69261786 69261786 T C AWAT2 Missense_Mutation p.I292V 0.44 tolerated(0.21) benign(0.078) TCGA-EJ-A65G-01 10 101503043 101503043 T A CUTC Nonsense_Mutation p.Y109* 0.06 TCGA-EJ-A65G-01 11 14316390 14316390 T A RRAS2 Missense_Mutation p.Q72L 0.09 deleterious(0) benign(0.361) TCGA-EJ-A65G-01 11 26702711 26702711 C T SLC5A12 Missense_Mutation p.A456T 0.35 deleterious(0.01) benign(0.309) TCGA-EJ-A65G-01 11 56085932 56085932 G T OR8K3 Missense_Mutation p.K50N 0.20 tolerated_low_confidence(0.07) benign(0.025) TCGA-EJ-A65G-01 11 56344440 56380221 11:56344440-56380221 - OR5M10 large deletion 0.17 TCGA-EJ-A65G-01 12 109894046 109894046 G C KCTD10 Silent p.V200V 0.12 TCGA-EJ-A65G-01 13 28794430 28794430 C T PAN3 Silent p.N305N 0.21 TCGA-EJ-A65G-01 17 8141481 8141481 T C CTC1 Missense_Mutation p.N172S 0.23 tolerated(0.16) benign(0.015) TCGA-EJ-A65G-01 1 226924202 226924202 C T ITPKB Missense_Mutation p.D320N 0.05 deleterious_low_confidence(0.04) possibly_damaging(0.573) TCGA-EJ-A65G-01 1 38300817 38300817 A T MTF1 Missense_Mutation p.S308R 0.32 deleterious(0) benign(0.157) TCGA-EJ-A65G-01 1 38300818 38300818 C T MTF1 Missense_Mutation p.S308N 0.32 deleterious(0.01) benign(0.075) TCGA-EJ-A65G-01 1 74649343 74649343 T C LRRIQ3 Missense_Mutation p.E9G 0.27 deleterious(0) probably_damaging(1) TCGA-EJ-A65G-01 1 909227 909227 G T PLEKHN1 Missense_Mutation p.M483I 0.10 tolerated(0.06) benign(0.015) TCGA-EJ-A65G-01 1 91182527 91182527 G A BARHL2 Missense_Mutation p.H76Y 0.24 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-EJ-A65G-01 3 121208388 121208388 A G POLQ Silent p.N1130N 0.27 TCGA-EJ-A65G-01 3 9989295 9989295 A G PRRT3 Missense_Mutation p.M521T 0.19 deleterious(0) probably_damaging(0.99) TCGA-EJ-A65G-01 5 140167326 140167326 C T PCDHA1 Missense_Mutation p.A484V 0.03 tolerated_low_confidence(0.06) benign(0.223) TCGA-EJ-A65G-01 6 69653743 69653743 G T BAI3 Missense_Mutation p.W351L 0.27 deleterious(0) probably_damaging(0.996) TCGA-EJ-A65G-01 8 107752617 107752617 T G OXR1 Missense_Mutation p.L738R 0.05 deleterious(0) probably_damaging(1) TCGA-EJ-A65G-01 9 34978067 34978067 C T KIAA1045 Missense_Mutation p.R388C 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-EJ-A65G-01 X 120008936 120008936 G A CT47B1 Nonsense_Mutation p.Q197* 0.06 TCGA-EJ-A65G-01 X 27997690 27997690 C T DCAF8L1 Missense_Mutation p.E588K 0.08 deleterious(0.02) benign(0.433) TCGA-EJ-A65J-01 11 1586965 1586965 T C DUSP8 Missense_Mutation p.D31G 0.40 deleterious(0) probably_damaging(0.992) TCGA-EJ-A65J-01 11 57094190 57094190 C T SSRP1 Missense_Mutation p.R682K 0.44 tolerated(1) unknown(0) TCGA-EJ-A65J-01 11 62554330 62554330 A T TAF6L Silent p.A477A 0.44 TCGA-EJ-A65J-01 11 77934693 77934693 G C GAB2 Missense_Mutation p.D444E 0.41 tolerated(0.3) benign(0.007) TCGA-EJ-A65J-01 12 56078884 56078884 G A ITGA7 Silent p.P1128P 0.33 TCGA-EJ-A65J-01 12 5853449 5853449 T A ANO2 Missense_Mutation p.M405L 0.37 deleterious(0.02) probably_damaging(0.955) TCGA-EJ-A65J-01 15 35152284 35152284 T A AQR Missense_Mutation p.M1368L 0.34 tolerated(0.53) benign(0.005) TCGA-EJ-A65J-01 15 45968454 45968454 A G SQRDL Silent p.K270K 0.43 TCGA-EJ-A65J-01 16 1570724 1570724 G A IFT140 Missense_Mutation p.S1180F 0.25 tolerated(0.11) benign(0.022) TCGA-EJ-A65J-01 16 3273768 3273768 C T ZNF200 3'UTR 0.27 TCGA-EJ-A65J-01 16 48295427 48295427 G T LONP2 Missense_Mutation p.M272I 0.41 tolerated(0.18) benign(0) TCGA-EJ-A65J-01 16 72830880 72830881 - CT ZFHX3 Frame_Shift_Ins p.G1901Rfs*14 0.27 TCGA-EJ-A65J-01 17 57684397 57684397 G C DHX40 Missense_Mutation p.G735A 0.43 tolerated(0.39) benign(0.004) TCGA-EJ-A65J-01 17 75493430 75493430 T C SEPT9 Missense_Mutation p.L536P 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-EJ-A65J-01 17 79536065 79536065 G A NPLOC4 Missense_Mutation p.R476W 0.26 deleterious(0.01) benign(0.089) TCGA-EJ-A65J-01 19 12430640 12430640 T G ZNF563 Missense_Mutation p.M67L 0.39 tolerated(0.2) benign(0.004) TCGA-EJ-A65J-01 19 30934878 30934878 A G ZNF536 Missense_Mutation p.K137E 0.17 deleterious(0) probably_damaging(0.991) TCGA-EJ-A65J-01 19 35753475 35753475 C T LSR Silent p.L268L 0.24 TCGA-EJ-A65J-01 19 44099419 44099419 G A IRGQ Silent p.I24I 0.24 TCGA-EJ-A65J-01 19 4523867 4523867 G A PLIN5 Silent p.H355H 0.38 TCGA-EJ-A65J-01 19 49797195 49797195 G A SLC6A16 Silent p.L503L 0.37 TCGA-EJ-A65J-01 19 56733190 56733190 G A ZSCAN5A Silent p.D415D 0.19 TCGA-EJ-A65J-01 1 111216224 111216224 A C KCNA3 Missense_Mutation p.F403C 0.40 deleterious(0) probably_damaging(1) TCGA-EJ-A65J-01 1 114483922 114483922 T G HIPK1 Missense_Mutation p.L306R 0.14 deleterious(0) probably_damaging(0.989) TCGA-EJ-A65J-01 1 114483936 114483936 C G HIPK1 Missense_Mutation p.L311V 0.14 deleterious(0.05) benign(0.424) TCGA-EJ-A65J-01 1 192335057 192335057 A C RGS21 Missense_Mutation p.I88L 0.41 tolerated(0.32) benign(0.012) TCGA-EJ-A65J-01 1 207262847 207262847 C A C4BPB 5'UTR 0.15 TCGA-EJ-A65J-01 22 38340508 38340508 C T C22orf23 Silent p.Q166Q 0.08 TCGA-EJ-A65J-01 2 28004505 28004506 - T RBKS Frame_Shift_Ins p.D316Rfs*31 0.29 TCGA-EJ-A65J-01 2 45233391 45233391 G A SIX2 Missense_Mutation p.A265V 0.14 tolerated_low_confidence(0.1) benign(0.069) TCGA-EJ-A65J-01 2 60679659 60679659 C T BCL11A 3'Flank 0.09 TCGA-EJ-A65J-01 2 90260218 90260218 T A IGKV1D-8 Silent p.T107T 0.06 TCGA-EJ-A65J-01 3 128292542 128292542 G A C3orf27 Missense_Mutation p.R11C 0.36 possibly_damaging(0.835) TCGA-EJ-A65J-01 3 13659706 13659706 C T FBLN2 Silent p.C620C 0.42 TCGA-EJ-A65J-01 3 142141706 142141706 A T XRN1 Missense_Mutation p.Y257N 0.23 deleterious(0) probably_damaging(0.998) TCGA-EJ-A65J-01 3 37512505 37512505 G A ITGA9 Missense_Mutation p.V65M 0.26 deleterious(0) probably_damaging(0.999) TCGA-EJ-A65J-01 3 49947931 49947931 G A MON1A Missense_Mutation p.R431C 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-EJ-A65J-01 4 184614173 184614173 C T TRAPPC11 Nonsense_Mutation p.Q704* 0.38 TCGA-EJ-A65J-01 5 150444612 150444612 G A TNIP1 Silent p.S15S 0.05 TCGA-EJ-A65J-01 5 54326364 54326364 C G GZMK Missense_Mutation p.F105L 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-EJ-A65J-01 6 54216177 54216177 C T TINAG Nonsense_Mutation p.Q370* 0.23 TCGA-EJ-A65J-01 6 6225029 6225029 A T F13A1 Missense_Mutation p.V288D 0.44 deleterious(0) possibly_damaging(0.893) TCGA-EJ-A65J-01 7 91570228 91570228 C G AKAP9 5'UTR 0.46 TCGA-EJ-A65J-01 8 142477519 142477519 G T MROH5 3'UTR 0.25 TCGA-EJ-A65J-01 8 26628173 26628173 G A ADRA1A Silent p.F298F 0.39 TCGA-EJ-A65J-01 8 2824233 2824233 C T CSMD1 Missense_Mutation p.G2987R 0.50 probably_damaging(0.998) TCGA-EJ-A65J-01 9 73235281 73235281 C T TRPM3 Missense_Mutation p.D602N 0.39 tolerated(0.1) possibly_damaging(0.492) TCGA-EJ-A65J-01 X 19984249 19984249 G A CXorf23 Missense_Mutation p.S187L 0.76 tolerated(0.11) benign(0.149) TCGA-EJ-A65M-01 10 38406449 38406449 G T ZNF37A Missense_Mutation p.G124W 0.07 deleterious(0.03) benign(0.001) TCGA-EJ-A65M-01 10 47000209 47000209 C T GPRIN2 Silent p.S443S 0.13 TCGA-EJ-A65M-01 10 64968222 64968222 A G JMJD1C Silent p.D1069D 0.29 TCGA-EJ-A65M-01 11 5878305 5878305 A G OR52E8 Missense_Mutation p.S210P 0.04 deleterious(0.03) possibly_damaging(0.812) TCGA-EJ-A65M-01 11 6261374 6261374 T G CNGA4 Missense_Mutation p.L117W 0.29 tolerated(0.18) benign(0.012) TCGA-EJ-A65M-01 12 100166698 100166698 A G ANKS1B Splice_Site p.X376_splice 0.12 TCGA-EJ-A65M-01 16 20442593 20442593 G A ACSM5 Missense_Mutation p.A420T 0.06 deleterious(0.01) possibly_damaging(0.903) TCGA-EJ-A65M-01 16 29820948 29820948 T A MAZ Missense_Mutation p.L456Q 0.27 deleterious(0.01) probably_damaging(0.955) TCGA-EJ-A65M-01 17 47696688 47696688 T C SPOP Missense_Mutation p.Y87C 0.25 tolerated(0.11) probably_damaging(1) TCGA-EJ-A65M-01 17 77758020 77758020 A G CBX2 Missense_Mutation p.M260V 0.04 deleterious(0.02) possibly_damaging(0.719) TCGA-EJ-A65M-01 19 18864349 18864349 C - CRTC1 Frame_Shift_Del p.S209* 0.20 TCGA-EJ-A65M-01 19 21580030 21580030 C T ZNF493 5'UTR 0.07 TCGA-EJ-A65M-01 19 38960079 38960079 C T RYR1 Missense_Mutation p.R1231C 0.03 probably_damaging(0.987) TCGA-EJ-A65M-01 1 156828373 156828373 G A INSRR Missense_Mutation p.P14L 0.17 tolerated(1) benign(0) TCGA-EJ-A65M-01 1 161069967 161069967 G A KLHDC9 Missense_Mutation p.D335N 0.25 tolerated(0.1) probably_damaging(1) TCGA-EJ-A65M-01 1 161642803 161642803 G T FCGR2B Nonsense_Mutation p.E144* 0.14 TCGA-EJ-A65M-01 1 181726120 181726120 G A CACNA1E Missense_Mutation p.R1396H 0.22 deleterious(0) possibly_damaging(0.812) TCGA-EJ-A65M-01 1 183085994 183085994 C G LAMC1 Missense_Mutation p.A507G 0.12 deleterious(0) probably_damaging(0.997) TCGA-EJ-A65M-01 1 4832521 4832521 G A AJAP1 Missense_Mutation p.V367M 0.08 tolerated(0.07) possibly_damaging(0.569) TCGA-EJ-A65M-01 1 85279651 85279651 C G LPAR3 Missense_Mutation p.E314Q 0.25 tolerated(0.55) benign(0.031) TCGA-EJ-A65M-01 1 92944268 92944268 T G GFI1 Silent p.R323R 0.21 TCGA-EJ-A65M-01 20 43727084 43727084 A T KCNS1 Missense_Mutation p.F110Y 0.28 deleterious(0.02) probably_damaging(0.967) TCGA-EJ-A65M-01 20 58514330 58514330 C T PPP1R3D Silent p.A219A 0.12 TCGA-EJ-A65M-01 20 62370021 62370021 A G LIME1 Missense_Mutation p.D219G 0.18 tolerated(0.11) benign(0.168) TCGA-EJ-A65M-01 22 39917543 39917543 A G ATF4 Silent p.L31L 0.24 TCGA-EJ-A65M-01 2 89339991 89339991 G C IGKV1-12 Silent p.T27T 0.12 TCGA-EJ-A65M-01 3 11831968 11831968 A C TAMM41 3'UTR 0.21 TCGA-EJ-A65M-01 3 47889325 47889325 T C DHX30 Missense_Mutation p.V722A 0.06 tolerated(0.5) benign(0.002) TCGA-EJ-A65M-01 4 113569581 113569581 C G LARP7 Intron 0.42 TCGA-EJ-A65M-01 4 39448817 39448817 A T KLB Missense_Mutation p.N824I 0.09 deleterious(0) probably_damaging(1) TCGA-EJ-A65M-01 4 39448818 39448818 C T KLB Silent p.N824N 0.10 TCGA-EJ-A65M-01 4 84015882 84015882 G T PLAC8 Silent p.I102I 0.10 TCGA-EJ-A65M-01 5 140563340 140563340 C A PCDHB16 Silent p.T402T 0.18 TCGA-EJ-A65M-01 5 141049577 141049577 C G ARAP3 Missense_Mutation p.E721Q 0.08 deleterious(0.01) probably_damaging(0.968) TCGA-EJ-A65M-01 5 34824457 34824457 A C RAI14 Missense_Mutation p.N840T 0.24 tolerated(1) benign(0.011) TCGA-EJ-A65M-01 5 82836888 82836888 C T VCAN Missense_Mutation p.T2689M 0.17 deleterious(0.04) possibly_damaging(0.738) TCGA-EJ-A65M-01 6 152469436 152469436 C T SYNE1 Nonsense_Mutation p.W8240* 0.09 TCGA-EJ-A65M-01 6 51613289 51613289 A G PKHD1 Missense_Mutation p.I3042T 0.24 tolerated(0.08) possibly_damaging(0.672) TCGA-EJ-A65M-01 6 56373517 56373517 C T DST Nonsense_Mutation p.W3727* 0.26 TCGA-EJ-A65M-01 6 56471131 56471131 C G DST Intron 0.19 TCGA-EJ-A65M-01 7 102100103 102100103 C T ALKBH4 Missense_Mutation p.R90Q 0.20 tolerated(0.71) benign(0.001) TCGA-EJ-A65M-01 8 10474068 10474068 G T RP1L1 Missense_Mutation p.S213R 0.23 probably_damaging(0.981) TCGA-EJ-A65M-01 8 145109715 145109715 C T OPLAH Silent p.P837P 0.22 TCGA-EJ-A65M-01 8 1624784 1624784 G A DLGAP2 Missense_Mutation p.R683Q 0.10 tolerated(0.22) probably_damaging(0.975) TCGA-EJ-A6RA-01 12 39763969 39763969 T G KIF21A Missense_Mutation p.K47Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-EJ-A6RA-01 13 67801398 67801398 T C PCDH9 Missense_Mutation p.D392G 0.04 deleterious(0) probably_damaging(1) TCGA-EJ-A6RA-01 15 44150892 44150892 G A WDR76 Missense_Mutation p.R478K 0.04 deleterious(0) probably_damaging(0.999) TCGA-EJ-A6RA-01 1 171301877 171301877 G C FMO4 Missense_Mutation p.W219C 0.07 deleterious(0) probably_damaging(0.992) TCGA-EJ-A6RA-01 2 122038720 122038720 C G TFCP2L1 Missense_Mutation p.E64Q 0.06 deleterious(0) probably_damaging(0.933) TCGA-EJ-A6RA-01 2 141625171 141625171 G A LRP1B Missense_Mutation p.R1523C 0.08 benign(0.061) TCGA-EJ-A6RA-01 3 63638399 63638399 T C SNTN Silent p.S12S 0.06 TCGA-EJ-A6RA-01 4 123202796 123202796 A G KIAA1109 Silent p.P2968P 0.06 TCGA-EJ-A6RA-01 5 109200789 109200789 T G MAN2A1 Missense_Mutation p.F1075C 0.08 deleterious(0) probably_damaging(0.988) TCGA-EJ-A6RA-01 5 109200801 109200801 T C MAN2A1 Missense_Mutation p.F1079S 0.08 deleterious(0.04) probably_damaging(0.933) TCGA-EJ-A6RA-01 6 49412360 49412360 A C MUT Silent p.S556S 0.03 TCGA-EJ-A6RA-01 6 63990991 63990991 G A LGSN Silent p.T155T 0.06 TCGA-EJ-A6RA-01 7 72891702 72891702 G A BAZ1B Missense_Mutation p.R697C 0.11 deleterious(0) probably_damaging(0.999) TCGA-EJ-A6RA-01 8 56860229 56860229 C A LYN Silent p.I77I 0.05 TCGA-EJ-A6RA-01 8 95538760 95538760 T C KIAA1429 Missense_Mutation p.D571G 0.04 tolerated(0.11) benign(0.173) TCGA-EJ-A6RC-01 10 64936221 64936221 G A JMJD1C Nonsense_Mutation p.Q2413* 0.09 TCGA-EJ-A6RC-01 10 99376504 99376504 C T MORN4 Missense_Mutation p.G75R 0.10 deleterious(0) probably_damaging(0.989) TCGA-EJ-A6RC-01 11 22239825 22239825 C T ANO5 Missense_Mutation p.R58W 0.09 deleterious(0) probably_damaging(0.956) TCGA-EJ-A6RC-01 11 34162694 34162694 T C NAT10 Missense_Mutation p.I884T 0.03 deleterious(0.02) benign(0.035) TCGA-EJ-A6RC-01 11 74168562 74168562 G A KCNE3 Missense_Mutation p.A16V 0.06 tolerated_low_confidence(0.19) benign(0.022) TCGA-EJ-A6RC-01 12 14613530 14613530 C T ATF7IP Missense_Mutation p.P754S 0.13 deleterious_low_confidence(0.04) unknown(0) TCGA-EJ-A6RC-01 13 23905654 23905654 T G SACS Missense_Mutation p.I4121L 0.04 possibly_damaging(0.891) TCGA-EJ-A6RC-01 14 88945894 88945894 C T PTPN21 Silent p.A627A 0.08 TCGA-EJ-A6RC-01 16 21170750 21170750 C T DNAH3 Missense_Mutation p.G5R 0.05 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-EJ-A6RC-01 16 51173693 51173693 C T SALL1 Missense_Mutation p.D814N 0.04 tolerated(0.1) probably_damaging(0.91) TCGA-EJ-A6RC-01 17 61566347 61566347 C T ACE Missense_Mutation p.P832L 0.20 deleterious(0.02) possibly_damaging(0.793) TCGA-EJ-A6RC-01 19 19120892 19120892 G A SUGP2 Silent p.L704L 0.06 TCGA-EJ-A6RC-01 19 23542322 23542322 C G ZNF91 Missense_Mutation p.K1153N 0.05 deleterious(0.01) possibly_damaging(0.856) TCGA-EJ-A6RC-01 1 11015082 11015082 C A C1orf127 Missense_Mutation p.V314F 0.06 deleterious(0) probably_damaging(0.98) TCGA-EJ-A6RC-01 1 158450674 158450674 G T OR10R2 Nonstop_Mutation p.*336Lext*? 0.09 TCGA-EJ-A6RC-01 1 171605566 171605566 G A MYOC Silent p.G338G 0.12 TCGA-EJ-A6RC-01 1 203013195 203013195 T A PPFIA4 Missense_Mutation p.F158Y 0.12 deleterious(0) probably_damaging(1) TCGA-EJ-A6RC-01 20 60854351 60854351 C T OSBPL2 Silent p.S210S 0.06 TCGA-EJ-A6RC-01 2 168099562 168099562 C G XIRP2 Missense_Mutation p.Q554E 0.09 possibly_damaging(0.615) TCGA-EJ-A6RC-01 3 101520287 101520287 C G NXPE3 Missense_Mutation p.T101S 0.08 tolerated(1) benign(0.035) TCGA-EJ-A6RC-01 3 51708534 51708534 C T TEX264 Missense_Mutation p.P72S 0.11 tolerated(0.1) probably_damaging(0.99) TCGA-EJ-A6RC-01 3 72428576 72428576 T G RYBP Missense_Mutation p.K143T 0.14 deleterious(0) probably_damaging(0.988) TCGA-EJ-A6RC-01 4 81123237 81123237 C T PRDM8 Silent p.G207G 0.09 TCGA-EJ-A6RC-01 5 16701504 16701504 G T MYO10 Missense_Mutation p.D1000E 0.14 tolerated_low_confidence(0.45) benign(0.013) TCGA-EJ-A6RC-01 6 56918134 56918134 A G KIAA1586 Silent p.V279V 0.08 TCGA-EJ-A6RC-01 6 84896094 84896094 T C KIAA1009 Missense_Mutation p.T453A 0.06 tolerated(0.35) benign(0.001) TCGA-EJ-A6RC-01 8 3263667 3263667 C T CSMD1 Silent p.G716G 0.14 TCGA-EJ-A6RC-01 9 86293436 86293436 T G UBQLN1 Missense_Mutation p.S264R 0.03 deleterious(0.02) probably_damaging(0.974) TCGA-EJ-A7NF-01 11 113813797 113813797 C T HTR3B Missense_Mutation p.P264S 0.40 deleterious(0) probably_damaging(1) TCGA-EJ-A7NF-01 11 58893556 58893556 T C FAM111B Silent p.V662V 0.09 TCGA-EJ-A7NF-01 11 77412452 77412452 C G RSF1 Missense_Mutation p.E608Q 0.34 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EJ-A7NF-01 12 274616 274616 C T IQSEC3 Missense_Mutation p.P909L 0.32 deleterious(0.01) probably_damaging(0.982) TCGA-EJ-A7NF-01 12 53509273 53509273 G A SOAT2 Silent p.P181P 0.38 TCGA-EJ-A7NF-01 14 105818794 105818794 T C PACS2 Missense_Mutation p.F96S 0.27 deleterious(0) probably_damaging(0.998) TCGA-EJ-A7NF-01 15 44783110 44783110 A G CTDSPL2 Missense_Mutation p.N202D 0.31 tolerated(0.37) benign(0.007) TCGA-EJ-A7NF-01 15 78474320 78474320 G A ACSBG1 Silent p.D354D 0.24 TCGA-EJ-A7NF-01 16 2258909 2258909 G A MLST8 3'UTR 0.20 TCGA-EJ-A7NF-01 17 79650772 79650772 C G ARL16 Silent p.L28L 0.31 TCGA-EJ-A7NF-01 18 77659468 77659468 C T KCNG2 Silent p.R351R 0.32 TCGA-EJ-A7NF-01 19 10563993 10563993 C T PDE4A Intron 0.12 TCGA-EJ-A7NF-01 19 17330466 17330466 G A USE1 Silent p.A208A 0.27 TCGA-EJ-A7NF-01 1 175049544 175049544 C T TNN Missense_Mutation p.H344Y 0.06 tolerated(0.22) benign(0.04) TCGA-EJ-A7NF-01 1 43630134 43630136 TCT - EBNA1BP2 In_Frame_Del p.K355del 0.41 TCGA-EJ-A7NF-01 20 34143849 34143849 T A ERGIC3 Missense_Mutation p.Y260N 0.31 deleterious(0) benign(0.281) TCGA-EJ-A7NF-01 2 210588329 210588329 T A MAP2 Intron 0.27 TCGA-EJ-A7NF-01 2 240984973 240984973 C T OR6B3 Missense_Mutation p.V173I 0.16 tolerated(0.48) benign(0.08) TCGA-EJ-A7NF-01 2 84517924 84517924 G A FUNDC2P2 RNA 0.25 TCGA-EJ-A7NF-01 3 36875231 36875231 C T TRANK1 Missense_Mutation p.R1904H 0.15 tolerated(0.58) possibly_damaging(0.762) TCGA-EJ-A7NF-01 5 140209758 140209758 G T PCDHA6 Silent p.V694V 0.05 TCGA-EJ-A7NF-01 6 144768388 144768388 A C UTRN Missense_Mutation p.L552F 0.39 deleterious(0) probably_damaging(0.917) TCGA-EJ-A7NF-01 6 148865535 148865535 C T SASH1 Nonsense_Mutation p.Q977* 0.05 TCGA-EJ-A7NF-01 6 31084574 31084574 C T CDSN Missense_Mutation p.C273Y 0.26 deleterious_low_confidence(0) unknown(0) TCGA-EJ-A7NF-01 8 3611520 3611520 T A CSMD1 Missense_Mutation p.N288I 0.09 probably_damaging(0.991) TCGA-EJ-A7NF-01 X 29301248 29301248 C T IL1RAPL1 Silent p.D92D 0.73 TCGA-EJ-A7NG-01 18 47421475 47421475 G A MYO5B Missense_Mutation p.R961W 0.06 deleterious(0) possibly_damaging(0.453) TCGA-EJ-A7NG-01 2 70890788 70890788 G A ADD2 Silent p.N650N 0.07 TCGA-EJ-A7NG-01 3 41746766 41746766 G C ULK4 Missense_Mutation p.T889R 0.12 deleterious(0) possibly_damaging(0.897) TCGA-EJ-A7NG-01 4 1902918 1902918 G A WHSC1 Silent p.L179L 0.05 TCGA-EJ-A7NH-01 11 61643432 61643432 G A FADS3 Missense_Mutation p.P393S 0.04 deleterious(0) probably_damaging(1) TCGA-EJ-A7NH-01 12 48539011 48539011 C T PFKM Missense_Mutation p.T775I 0.15 tolerated(0.08) possibly_damaging(0.593) TCGA-EJ-A7NH-01 12 56749984 56749984 G T STAT2 Missense_Mutation p.R73S 0.05 tolerated(0.07) possibly_damaging(0.57) TCGA-EJ-A7NH-01 15 93524122 93524122 G C CHD2 Missense_Mutation p.G985A 0.09 deleterious(0.02) benign(0.228) TCGA-EJ-A7NH-01 16 71218839 71218839 C T HYDIN Missense_Mutation p.A64T 0.04 probably_damaging(0.981) TCGA-EJ-A7NH-01 17 7100327 7100327 G T DLG4 Missense_Mutation p.L321M 0.13 tolerated(0.23) probably_damaging(0.983) TCGA-EJ-A7NH-01 17 7578443 7578443 A G TP53 Missense_Mutation p.Y163H 0.08 deleterious(0) probably_damaging(0.999) TCGA-EJ-A7NH-01 19 4431958 4431958 G A CHAF1A Missense_Mutation p.D653N 0.14 deleterious(0.04) probably_damaging(0.995) TCGA-EJ-A7NH-01 1 234444947 234444947 T G SLC35F3 Missense_Mutation p.Y237D 0.06 deleterious(0) probably_damaging(0.999) TCGA-EJ-A7NH-01 22 38254723 38254723 C G EIF3L Nonsense_Mutation p.Y137* 0.17 TCGA-EJ-A7NH-01 2 171686099 171686099 G A GAD1 Missense_Mutation p.R87H 0.10 tolerated(0.31) benign(0.002) TCGA-EJ-A7NH-01 3 52012035 52012035 G T ABHD14A Missense_Mutation p.G73V 0.22 deleterious(0.01) possibly_damaging(0.856) TCGA-EJ-A7NH-01 4 3948505 3948505 G A FAM86EP Intron 0.11 TCGA-EJ-A7NH-01 6 31868519 31868519 T C ZBTB12 Silent p.E188E 0.08 TCGA-EJ-A7NH-01 6 69348838 69348838 G A BAI3 Missense_Mutation p.D91N 0.14 deleterious(0) probably_damaging(0.971) TCGA-EJ-A7NH-01 6 75950898 75950898 C T COX7A2 Silent p.L66L 0.10 TCGA-EJ-A7NH-01 6 85446895 85446895 C T TBX18 Silent p.Q444Q 0.17 TCGA-EJ-A7NH-01 7 115581955 115581955 G A TFEC Missense_Mutation p.R219W 0.17 deleterious(0) probably_damaging(0.959) TCGA-EJ-A7NH-01 7 137237167 137237167 C T DGKI Missense_Mutation p.A699T 0.21 deleterious(0) probably_damaging(0.998) TCGA-EJ-A7NH-01 7 151873585 151873585 G A KMT2C Nonsense_Mutation p.Q2985* 0.13 TCGA-EJ-A7NH-01 8 72936047 72936047 A G TRPA1 Splice_Site p.X1050_splice 0.18 TCGA-EJ-A7NH-01 9 131370264 131370264 G A SPTAN1 Missense_Mutation p.R1427H 0.15 deleterious(0) probably_damaging(0.999) TCGA-EJ-A7NH-01 9 72131101 72131101 C T APBA1 Silent p.K342K 0.18 TCGA-EJ-A7NH-01 X 15270503 15270503 C T ASB9 Nonsense_Mutation p.W102* 0.07 TCGA-EJ-A7NJ-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.10 tolerated(0.07) benign(0.069) TCGA-EJ-A7NJ-01 17 40734812 40734812 T C FAM134C Missense_Mutation p.T275A 0.06 tolerated(0.34) benign(0.001) TCGA-EJ-A7NJ-01 19 12977541 12977541 C T MAST1 Missense_Mutation p.R702C 0.10 deleterious(0) possibly_damaging(0.794) TCGA-EJ-A7NJ-01 19 54444804 54444804 C A CACNG7 Missense_Mutation p.Q169K 0.06 tolerated(1) benign(0.027) TCGA-EJ-A7NJ-01 21 43838616 43838616 A T UBASH3A Missense_Mutation p.E315V 0.07 deleterious(0) probably_damaging(0.949) TCGA-EJ-A7NJ-01 3 129115943 129115943 G A EFCAB12 3'Flank 0.05 TCGA-EJ-A7NJ-01 3 19492678 19492678 C G KCNH8 Missense_Mutation p.S536C 0.04 deleterious(0) probably_damaging(0.974) TCGA-EJ-A7NJ-01 5 89938713 89938713 G A GPR98 Missense_Mutation p.G803E 0.05 probably_damaging(0.972) TCGA-EJ-A7NJ-01 X 132458207 132458207 G A GPC4 Missense_Mutation p.A226V 0.08 tolerated(0.18) possibly_damaging(0.663) TCGA-EJ-A7NK-01 19 54290977 54290977 G A MIR371A RNA 0.08 TCGA-EJ-A7NK-01 22 26743709 26743709 C T SEZ6L Missense_Mutation p.S746L 0.09 deleterious(0.03) benign(0.072) TCGA-EJ-A7NK-01 3 195796323 195796323 C T TFRC Intron 0.11 TCGA-EJ-A7NK-01 3 39185627 39185627 C T CSRNP1 Splice_Site p.X260_splice 0.09 TCGA-EJ-A7NK-01 3 52696223 52696223 C A PBRM1 Missense_Mutation p.V152F 0.05 deleterious(0.02) possibly_damaging(0.556) TCGA-EJ-A7NK-01 6 26156583 26156583 C T HIST1H1E 5'UTR 0.05 TCGA-EJ-A7NM-01 10 103751749 103751749 C T C10orf76 Missense_Mutation p.R441H 0.30 deleterious(0.01) probably_damaging(0.978) TCGA-EJ-A7NM-01 11 1217180 1217180 G A MUC5AC RNA 0.33 TCGA-EJ-A7NM-01 11 76814045 76814045 C T OMP Missense_Mutation p.R54C 0.06 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-EJ-A7NM-01 11 95580967 95580967 G A MTMR2 Nonsense_Mutation p.R364* 0.35 TCGA-EJ-A7NM-01 12 48543215 48543215 G A ASB8 Silent p.L267L 0.31 TCGA-EJ-A7NM-01 12 50236869 50236869 A C BCDIN3D Translation_Start_Site p.M1? 0.31 deleterious_low_confidence(0) benign(0.042) TCGA-EJ-A7NM-01 12 54369166 54369166 T C HOXC11 Missense_Mutation p.L295P 0.24 deleterious(0) probably_damaging(0.999) TCGA-EJ-A7NM-01 13 103338687 103338687 A T METTL21C Missense_Mutation p.H163Q 0.32 deleterious(0) probably_damaging(0.951) TCGA-EJ-A7NM-01 13 21219039 21219039 A G IFT88 Missense_Mutation p.I640V 0.27 tolerated(0.22) benign(0.115) TCGA-EJ-A7NM-01 13 21401283 21401283 G A XPO4 Nonsense_Mutation p.Q255* 0.30 TCGA-EJ-A7NM-01 14 23887454 23887454 G A MYH7 Silent p.D1378D 0.05 TCGA-EJ-A7NM-01 14 73464594 73464594 C G ZFYVE1 Missense_Mutation p.D305H 0.40 deleterious(0.01) possibly_damaging(0.765) TCGA-EJ-A7NM-01 14 86089489 86089489 C T FLRT2 Missense_Mutation p.A544V 0.31 deleterious(0) probably_damaging(0.998) TCGA-EJ-A7NM-01 14 95085708 95085708 G A SERPINA3 Missense_Mutation p.A274T 0.44 deleterious(0.03) possibly_damaging(0.608) TCGA-EJ-A7NM-01 15 56390461 56390461 G A RFX7 Missense_Mutation p.R309W 0.27 deleterious(0) probably_damaging(1) TCGA-EJ-A7NM-01 15 64448106 64448106 G A PPIB 3'UTR 0.35 TCGA-EJ-A7NM-01 16 15609240 15609240 G A C16orf45 Missense_Mutation p.R62H 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-EJ-A7NM-01 16 20855295 20855295 C T AC004381.6 Nonsense_Mutation p.Q556* 0.25 TCGA-EJ-A7NM-01 16 72991718 72991718 G A ZFHX3 Missense_Mutation p.A776V 0.30 possibly_damaging(0.727) TCGA-EJ-A7NM-01 19 17412032 17412032 C T ABHD8 Missense_Mutation p.A132T 0.38 tolerated(0.79) benign(0.001) TCGA-EJ-A7NM-01 19 43433714 43433714 C G PSG7 Missense_Mutation p.E197Q 0.29 tolerated(0.39) benign(0.025) TCGA-EJ-A7NM-01 19 48801473 48801473 C T CCDC114 Silent p.L418L 0.23 TCGA-EJ-A7NM-01 1 112045902 112045902 G A ADORA3 Silent p.C25C 0.27 TCGA-EJ-A7NM-01 1 112525243 112525243 T A KCND3 Nonsense_Mutation p.K36* 0.08 TCGA-EJ-A7NM-01 1 114442433 114442433 G C AP4B1 Intron 0.27 TCGA-EJ-A7NM-01 1 118484412 118484412 A G WDR3 Missense_Mutation p.K311E 0.30 tolerated(1) benign(0) TCGA-EJ-A7NM-01 1 145414854 145414854 C A HFE2 Missense_Mutation p.L25I 0.05 tolerated(0.14) unknown(0) TCGA-EJ-A7NM-01 1 158943542 158943542 C A PYHIN1 Missense_Mutation p.P489T 0.15 possibly_damaging(0.641) TCGA-EJ-A7NM-01 1 160134025 160134025 G A ATP1A4 Silent p.A286A 0.20 TCGA-EJ-A7NM-01 1 161642793 161642793 G T FCGR2B Silent p.L140L 0.08 TCGA-EJ-A7NM-01 1 229568848 229568848 G T ACTA1 Missense_Mutation p.D5E 0.30 tolerated_low_confidence(0.52) benign(0) TCGA-EJ-A7NM-01 1 243328829 243328829 T A CEP170 Missense_Mutation p.K811N 0.23 deleterious(0) possibly_damaging(0.881) TCGA-EJ-A7NM-01 1 32259746 32259746 G A SPOCD1 Missense_Mutation p.P788S 0.31 tolerated(0.32) benign(0.018) TCGA-EJ-A7NM-01 1 46782342 46782342 T C UQCRH 3'UTR 0.42 TCGA-EJ-A7NM-01 1 55273356 55273356 G A C1orf177 Missense_Mutation p.R117Q 0.22 tolerated(0.61) benign(0.011) TCGA-EJ-A7NM-01 20 44236681 44236681 A C WFDC9 3'UTR 0.31 TCGA-EJ-A7NM-01 20 6031443 6031443 T C LRRN4 Missense_Mutation p.Q281R 0.38 tolerated(0.25) benign(0.059) TCGA-EJ-A7NM-01 21 33651206 33651206 G C MIS18A Missense_Mutation p.S40R 0.35 tolerated_low_confidence(0.14) benign(0.316) TCGA-EJ-A7NM-01 21 46308729 46308729 C T ITGB2 Silent p.S653S 0.13 TCGA-EJ-A7NM-01 22 24124530 24124530 A G MMP11 Missense_Mutation p.N398S 0.18 tolerated(0.25) benign(0.07) TCGA-EJ-A7NM-01 22 24621251 24621251 C T GGT5 Missense_Mutation p.G490R 0.27 deleterious(0) probably_damaging(1) TCGA-EJ-A7NM-01 22 29083835 29083835 G T CHEK2 3'UTR 0.33 TCGA-EJ-A7NM-01 2 158181230 158181230 C T ERMN Missense_Mutation p.D109N 0.20 tolerated(0.06) probably_damaging(1) TCGA-EJ-A7NM-01 2 179482528 179482528 G A TTN Silent p.F15850F 0.33 TCGA-EJ-A7NM-01 2 29247231 29247231 C T FAM179A Missense_Mutation p.A615V 0.22 tolerated(0.14) benign(0.024) TCGA-EJ-A7NM-01 2 37455178 37455178 T G CEBPZ Missense_Mutation p.Q386H 0.28 tolerated(0.43) benign(0.048) TCGA-EJ-A7NM-01 3 102171848 102171848 G A ZPLD1 Silent p.S80S 0.23 TCGA-EJ-A7NM-01 3 46757061 46757061 G A PRSS50 Missense_Mutation p.S145F 0.22 tolerated(0.39) possibly_damaging(0.549) TCGA-EJ-A7NM-01 4 100870896 100870896 G C H2AFZ Missense_Mutation p.A2G 0.35 deleterious_low_confidence(0) unknown(0) TCGA-EJ-A7NM-01 4 69816966 69816966 T A UGT2A3 Missense_Mutation p.R171S 0.12 deleterious(0.01) possibly_damaging(0.461) TCGA-EJ-A7NM-01 5 126791206 126791206 G A MEGF10 Missense_Mutation p.G1047S 0.33 tolerated(1) probably_damaging(0.999) TCGA-EJ-A7NM-01 5 138714919 138714919 G T SLC23A1 Silent p.P354P 0.34 TCGA-EJ-A7NM-01 5 150947571 150947571 G A FAT2 Missense_Mutation p.R308W 0.27 possibly_damaging(0.582) TCGA-EJ-A7NM-01 5 7698397 7698397 G A ADCY2 Missense_Mutation p.C340Y 0.22 deleterious(0) probably_damaging(1) TCGA-EJ-A7NM-01 5 98115452 98115452 A G RGMB Missense_Mutation p.N143S 0.18 deleterious(0) probably_damaging(0.96) TCGA-EJ-A7NM-01 6 109802616 109802616 C T ZBTB24 Missense_Mutation p.G205D 0.25 tolerated(0.44) benign(0.001) TCGA-EJ-A7NM-01 6 132271649 132271649 C G CTGF Silent p.T108T 0.33 TCGA-EJ-A7NM-01 6 26200197 26200197 G A HIST1H2BF 3'UTR 0.38 TCGA-EJ-A7NM-01 7 138968836 138968836 A G UBN2 Missense_Mutation p.K1062R 0.33 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-EJ-A7NM-01 7 149512437 149512437 G T SSPO RNA 0.44 TCGA-EJ-A7NM-01 7 44153447 44153447 C T AEBP1 Missense_Mutation p.R1022C 0.23 deleterious(0) possibly_damaging(0.689) TCGA-EJ-A7NM-01 8 145016639 145016639 C G PLEC Intron 0.28 TCGA-EJ-A7NM-01 9 109701288 109701288 C G ZNF462 Silent p.A2109A 0.31 TCGA-EJ-A7NM-01 9 27291028 27291030 ATT - EQTN In_Frame_Del p.M137del 0.41 TCGA-EJ-A7NM-01 9 32632433 32632433 G A TAF1L Missense_Mutation p.R1049C 0.24 deleterious(0) probably_damaging(1) TCGA-EJ-A7NM-01 9 34637425 34637425 A C SIGMAR1 Intron 0.33 TCGA-EJ-A7NN-01 10 106074846 106074846 C T ITPRIP Missense_Mutation p.D322N 0.29 deleterious(0.01) probably_damaging(0.984) TCGA-EJ-A7NN-01 10 133781990 133781990 T C BNIP3 3'UTR 0.38 TCGA-EJ-A7NN-01 10 43088188 43088188 G T ZNF33B Missense_Mutation p.A737D 0.28 tolerated(0.24) possibly_damaging(0.832) TCGA-EJ-A7NN-01 10 7759621 7759621 C T ITIH2 Missense_Mutation p.T167M 0.04 tolerated(0.05) possibly_damaging(0.48) TCGA-EJ-A7NN-01 11 103908337 103908337 G A DDI1 Missense_Mutation p.A263T 0.42 deleterious(0) probably_damaging(0.998) TCGA-EJ-A7NN-01 11 121028755 121028755 G A TECTA Missense_Mutation p.R1504H 0.35 tolerated(0.34) benign(0.016) TCGA-EJ-A7NN-01 11 18159128 18159128 C G MRGPRX3 Missense_Mutation p.P127A 0.04 deleterious(0) probably_damaging(0.998) TCGA-EJ-A7NN-01 11 5444143 5444143 G A OR51Q1 Missense_Mutation p.R238H 0.29 deleterious(0) possibly_damaging(0.797) TCGA-EJ-A7NN-01 11 56237552 56237552 C T OR5M3 Missense_Mutation p.R141Q 0.30 tolerated(0.62) benign(0.009) TCGA-EJ-A7NN-01 11 614247 614247 C T IRF7 Silent p.G215G 0.17 TCGA-EJ-A7NN-01 11 65810901 65810901 C T GAL3ST3 Missense_Mutation p.V125M 0.33 tolerated(0.05) benign(0.012) TCGA-EJ-A7NN-01 12 109306307 109306307 G A SVOP 3'UTR 0.41 TCGA-EJ-A7NN-01 14 24975732 24975732 T G CMA1 Missense_Mutation p.Q96H 0.28 deleterious(0.02) probably_damaging(0.993) TCGA-EJ-A7NN-01 17 16701705 16701706 GG - CCDC144A 3'UTR 0.20 TCGA-EJ-A7NN-01 17 67003937 67003937 C T ABCA9 Missense_Mutation p.R1133K 0.36 tolerated(0.25) benign(0.042) TCGA-EJ-A7NN-01 17 74272813 74272813 G C QRICH2 Missense_Mutation p.H1601Q 0.37 deleterious(0.02) possibly_damaging(0.84) TCGA-EJ-A7NN-01 17 78326555 78326555 G T RNF213 Intron 0.29 TCGA-EJ-A7NN-01 19 11917051 11917051 A G ZNF491 Missense_Mutation p.R95G 0.41 deleterious(0.01) benign(0.359) TCGA-EJ-A7NN-01 19 19756730 19756730 T C ATP13A1 Missense_Mutation p.I1105V 0.36 tolerated(0.12) benign(0.13) TCGA-EJ-A7NN-01 19 21106087 21106087 A G ZNF85 5'Flank 0.24 TCGA-EJ-A7NN-01 19 40430352 40430352 C T FCGBP Missense_Mutation p.V531I 0.47 probably_damaging(0.999) TCGA-EJ-A7NN-01 19 50212049 50212049 C A CPT1C Missense_Mutation p.P507T 0.24 tolerated(0.28) possibly_damaging(0.639) TCGA-EJ-A7NN-01 19 8553550 8553550 G A HNRNPM Intron 0.14 TCGA-EJ-A7NN-01 1 185834881 185834881 T C HMCN1 Silent p.F169F 0.41 TCGA-EJ-A7NN-01 1 186307346 186307346 T C TPR Missense_Mutation p.N1394S 0.39 benign(0.292) TCGA-EJ-A7NN-01 1 51868169 51868169 G A EPS15 Missense_Mutation p.S607L 0.07 tolerated(0.42) benign(0.038) TCGA-EJ-A7NN-01 20 17446197 17446197 G T PCSK2 Nonsense_Mutation p.E477* 0.48 TCGA-EJ-A7NN-01 2 158272280 158272280 C T CYTIP Missense_Mutation p.R330Q 0.35 deleterious(0) probably_damaging(0.997) TCGA-EJ-A7NN-01 2 179702125 179702125 T A CCDC141 Missense_Mutation p.D1274V 0.37 deleterious(0) probably_damaging(0.96) TCGA-EJ-A7NN-01 2 232602765 232602765 G A PDE6D Missense_Mutation p.R75C 0.37 deleterious(0.05) benign(0.123) TCGA-EJ-A7NN-01 2 233898824 233898824 A C NEU2 Splice_Site p.X68_splice 0.29 TCGA-EJ-A7NN-01 2 242127968 242127968 A C ANO7 5'UTR 0.32 TCGA-EJ-A7NN-01 2 25851073 25851073 A C DTNB Missense_Mutation p.L110R 0.17 deleterious(0) probably_damaging(0.994) TCGA-EJ-A7NN-01 3 138036991 138036991 G A NME9 Missense_Mutation p.A67V 0.06 tolerated(0.26) benign(0.162) TCGA-EJ-A7NN-01 3 151164521 151164521 C T IGSF10 Missense_Mutation p.S1083N 0.29 tolerated(0.31) benign(0.011) TCGA-EJ-A7NN-01 4 1821092 1821092 C T LETM1 Silent p.L572L 0.55 TCGA-EJ-A7NN-01 4 37836309 37836309 G A PGM2 Missense_Mutation p.A107T 0.05 tolerated(0.6) benign(0.384) TCGA-EJ-A7NN-01 5 140209518 140209518 G A PCDHA6 Silent p.P614P 0.25 TCGA-EJ-A7NN-01 5 140574091 140574091 G A PCDHB10 Missense_Mutation p.A656T 0.19 deleterious_low_confidence(0.01) benign(0.01) TCGA-EJ-A7NN-01 5 178634658 178634658 G A ADAMTS2 Silent p.H249H 0.06 TCGA-EJ-A7NN-01 6 40359850 40359850 C T LRFN2 Silent p.A734A 0.33 TCGA-EJ-A7NN-01 6 55939043 55939043 G A COL21A1 Missense_Mutation p.T651I 0.25 tolerated(0.28) benign(0.002) TCGA-EJ-A7NN-01 7 137237147 137237147 G T DGKI Missense_Mutation p.S705R 0.07 tolerated(0.48) probably_damaging(0.997) TCGA-EJ-A7NN-01 8 120859294 120859294 T C DSCC1 Silent p.Q171Q 0.24 TCGA-EJ-A7NN-01 9 116018436 116018436 A T SLC31A1 Missense_Mutation p.H3L 0.28 deleterious(0) benign(0.001) TCGA-EJ-A7NN-01 X 53607826 53607826 C T HUWE1 Missense_Mutation p.R1894H 0.15 probably_damaging(0.98) TCGA-EJ-A8FN-01 10 27499985 27499985 T C ACBD5 Missense_Mutation p.N321S 0.13 tolerated(0.81) benign(0.001) TCGA-EJ-A8FN-01 10 74881976 74881976 A C NUDT13 Missense_Mutation p.R89S 0.04 tolerated(0.41) benign(0.027) TCGA-EJ-A8FN-01 11 122848488 122848488 C A BSX Missense_Mutation p.G191C 0.29 deleterious(0.05) benign(0.245) TCGA-EJ-A8FN-01 11 20078087 20078087 A G NAV2 Missense_Mutation p.K1638E 0.23 tolerated(1) benign(0) TCGA-EJ-A8FN-01 11 58604621 58604621 T G GLYATL2 Silent p.R115R 0.32 TCGA-EJ-A8FN-01 12 49445273 49445274 CT - KMT2D Frame_Shift_Del p.E731Afs*17 0.30 TCGA-EJ-A8FN-01 14 64006397 64006397 A G PPP2R5E Missense_Mutation p.S3P 0.23 tolerated_low_confidence(0.08) benign(0.1) TCGA-EJ-A8FN-01 15 73007695 73007695 T A BBS4 Missense_Mutation p.V95D 0.33 deleterious(0.02) benign(0.065) TCGA-EJ-A8FN-01 15 75651127 75651127 C T MAN2C1 Missense_Mutation p.V739M 0.06 tolerated(0.21) benign(0.197) TCGA-EJ-A8FN-01 16 47493029 47493029 A G ITFG1 Missense_Mutation p.V89A 0.21 tolerated(0.19) probably_damaging(0.932) TCGA-EJ-A8FN-01 16 66770010 66770010 G A DYNC1LI2 Silent p.L223L 0.07 TCGA-EJ-A8FN-01 17 18967328 18967328 A C SNORD3B-2 RNA 0.12 TCGA-EJ-A8FN-01 17 4996346 4996346 G A ZFP3 3'UTR 0.11 TCGA-EJ-A8FN-01 17 79409111 79409111 G A RP11-1055B8.7 Missense_Mutation p.G246S 0.18 benign(0.011) TCGA-EJ-A8FN-01 19 36213342 36213342 G A KMT2B Missense_Mutation p.E847K 0.25 benign(0.074) TCGA-EJ-A8FN-01 19 41939481 41939481 C T ATP5SL Missense_Mutation p.G138S 0.28 tolerated(1) benign(0.002) TCGA-EJ-A8FN-01 19 43698504 43698504 C T PSG4 Missense_Mutation p.V411I 0.26 tolerated(0.52) benign(0.173) TCGA-EJ-A8FN-01 19 51629378 51629378 C T SIGLEC9 Silent p.D247D 0.16 TCGA-EJ-A8FN-01 19 54627954 54627954 G A PRPF31 Silent p.T258T 0.27 TCGA-EJ-A8FN-01 19 54760375 54760375 T A LILRB5 Missense_Mutation p.D111V 0.24 deleterious(0) possibly_damaging(0.893) TCGA-EJ-A8FN-01 1 100572509 100572509 T A SASS6 Missense_Mutation p.K456I 0.20 deleterious(0) probably_damaging(0.964) TCGA-EJ-A8FN-01 1 103471673 103471673 C T COL11A1 Missense_Mutation p.R581H 0.10 unknown(0) TCGA-EJ-A8FN-01 1 113235477 113235477 C T MOV10 Missense_Mutation p.R356W 0.30 deleterious(0) probably_damaging(0.949) TCGA-EJ-A8FN-01 1 231337222 231337222 A C TRIM67 Missense_Mutation p.Q498P 0.24 deleterious(0.01) possibly_damaging(0.731) TCGA-EJ-A8FN-01 1 87045673 87045673 A G CLCA4 Missense_Mutation p.D802G 0.09 deleterious(0) probably_damaging(0.928) TCGA-EJ-A8FN-01 22 43576901 43576901 C T TTLL12 Silent p.A131A 0.05 TCGA-EJ-A8FN-01 2 116066820 116066820 G T DPP10 Silent p.L26L 0.31 TCGA-EJ-A8FN-01 2 116066821 116066821 G T DPP10 Nonsense_Mutation p.G27* 0.33 TCGA-EJ-A8FN-01 2 196689149 196689149 C T DNAH7 Missense_Mutation p.E3041K 0.08 deleterious(0) probably_damaging(0.994) TCGA-EJ-A8FN-01 2 97377673 97377673 G A LMAN2L Silent p.G210G 0.18 TCGA-EJ-A8FN-01 3 45637533 45637533 C T LIMD1 Missense_Mutation p.L388F 0.42 tolerated(0.05) possibly_damaging(0.577) TCGA-EJ-A8FN-01 3 49065748 49065748 C T IMPDH2 Missense_Mutation p.G86D 0.11 deleterious(0) probably_damaging(0.999) TCGA-EJ-A8FN-01 5 110427946 110427946 C T WDR36 5'UTR 0.30 TCGA-EJ-A8FN-01 5 135382985 135382985 G A TGFBI Missense_Mutation p.R216Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-EJ-A8FN-01 6 33132638 33132638 G A COL11A2 Silent p.D1532D 0.23 TCGA-EJ-A8FN-01 6 34499460 34499460 C A PACSIN1 Missense_Mutation p.T374N 0.08 tolerated(0.1) benign(0) TCGA-EJ-A8FN-01 7 123302800 123302800 C A LMOD2 Missense_Mutation p.S387Y 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-EJ-A8FN-01 7 27204581 27204581 T A HOXA9 Nonsense_Mutation p.R166* 0.15 TCGA-EJ-A8FN-01 7 87060768 87060768 G T ABCB4 Missense_Mutation p.S615R 0.35 tolerated(0.29) benign(0.001) TCGA-EJ-A8FN-01 8 145583708 145583708 G A SLC52A2 Missense_Mutation p.D186N 0.06 tolerated(0.58) benign(0.001) TCGA-EJ-A8FN-01 9 125936108 125936108 G A STRBP Missense_Mutation p.R80W 0.30 deleterious(0.01) possibly_damaging(0.792) TCGA-EJ-A8FN-01 9 18504838 18504838 C T ADAMTSL1 Silent p.T25T 0.05 TCGA-EJ-A8FN-01 9 3293175 3293175 G A RFX3 Silent p.H211H 0.06 TCGA-EJ-A8FN-01 9 37746501 37746501 G A FRMPD1 Missense_Mutation p.R1491H 0.16 deleterious(0.04) benign(0.017) TCGA-EJ-A8FN-01 X 128631828 128631829 - T SMARCA1 Frame_Shift_Ins p.E500Rfs*29 0.40 TCGA-EJ-A8FN-01 X 153137810 153137810 C T L1CAM Splice_Site p.X66_splice 0.41 TCGA-EJ-A8FO-01 10 106019439 106019439 C G GSTO1 Missense_Mutation p.I83M 0.24 deleterious(0) probably_damaging(0.979) TCGA-EJ-A8FO-01 10 127512145 127512145 C G BCCIP Missense_Mutation p.R7G 0.17 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-EJ-A8FO-01 10 99377062 99377062 C T MORN4 Missense_Mutation p.G29S 0.13 deleterious(0) probably_damaging(0.959) TCGA-EJ-A8FO-01 11 107578540 107578540 C T SLN 3'UTR 0.18 TCGA-EJ-A8FO-01 11 132306614 132306614 G T OPCML Missense_Mutation p.L242M 0.08 deleterious(0.03) probably_damaging(0.939) TCGA-EJ-A8FO-01 13 25266991 25266991 G A ATP12A Missense_Mutation p.R451Q 0.14 deleterious(0) possibly_damaging(0.543) TCGA-EJ-A8FO-01 15 77406832 77406832 C T PEAK1 Missense_Mutation p.R1636Q 0.21 tolerated(0.6) benign(0.004) TCGA-EJ-A8FO-01 16 10729651 10729651 A C TEKT5 Missense_Mutation p.M404R 0.13 deleterious(0) possibly_damaging(0.516) TCGA-EJ-A8FO-01 16 22268604 22268604 G A EEF2K Missense_Mutation p.G267S 0.14 deleterious(0.03) probably_damaging(0.995) TCGA-EJ-A8FO-01 17 10428898 10428898 C T MYH2 Silent p.T1469T 0.18 TCGA-EJ-A8FO-01 19 19338368 19338368 C A NCAN Missense_Mutation p.P647T 0.06 deleterious(0.01) benign(0.039) TCGA-EJ-A8FO-01 1 147380281 147380281 G A GJA8 Missense_Mutation p.D67N 0.23 deleterious(0) probably_damaging(0.981) TCGA-EJ-A8FO-01 1 154841694 154841694 G A KCNN3 Silent p.T249T 0.08 TCGA-EJ-A8FO-01 1 179310184 179310184 C A SOAT1 Silent p.L173L 0.18 TCGA-EJ-A8FO-01 2 176043113 176043113 T C ATP5G3 Missense_Mutation p.Q111R 0.11 deleterious(0.01) probably_damaging(0.953) TCGA-EJ-A8FO-01 3 12845101 12845101 C T CAND2 Silent p.N61N 0.10 TCGA-EJ-A8FO-01 3 136699300 136699300 G T IL20RB Intron 0.07 TCGA-EJ-A8FO-01 6 160998309 160998309 G A LPA Missense_Mutation p.P1497L 0.15 tolerated(0.12) probably_damaging(0.998) TCGA-EJ-A8FO-01 7 111540466 111540466 C A DOCK4 Missense_Mutation p.G482C 0.21 deleterious(0) probably_damaging(1) TCGA-EJ-A8FO-01 7 48390281 48390281 C T ABCA13 Missense_Mutation p.R3416C 0.05 possibly_damaging(0.713) TCGA-EJ-A8FP-01 10 54042040 54042040 C T PRKG1 Missense_Mutation p.S558L 0.05 deleterious(0) probably_damaging(0.991) TCGA-EJ-A8FP-01 16 89383428 89383428 C T ANKRD11 5'UTR 0.09 TCGA-EJ-A8FP-01 17 30685544 30685544 C T ZNF207 Missense_Mutation p.A64V 0.05 tolerated(0.08) possibly_damaging(0.866) TCGA-EJ-A8FP-01 19 17412031 17412031 G A ABHD8 Missense_Mutation p.A132V 0.07 tolerated(0.32) benign(0) TCGA-EJ-A8FP-01 20 37536550 37536550 C T PPP1R16B Missense_Mutation p.R334W 0.08 deleterious(0) probably_damaging(0.998) TCGA-EJ-A8FP-01 20 4713138 4713138 C T PRNT Missense_Mutation p.S62N 0.19 tolerated_low_confidence(0.25) benign(0.393) TCGA-EJ-A8FP-01 4 52927028 52927028 G A SPATA18 Missense_Mutation p.G92R 0.05 deleterious(0.03) probably_damaging(0.998) TCGA-EJ-A8FP-01 6 32813387 32813387 A G TAP1 Missense_Mutation p.M799T 0.07 deleterious(0) possibly_damaging(0.494) TCGA-EJ-A8FP-01 7 150647430 150647430 G C KCNH2 Missense_Mutation p.P742A 0.04 tolerated(1) benign(0.021) TCGA-EJ-A8FS-01 10 102684014 102684014 C G FAM178A Missense_Mutation p.S419C 0.41 tolerated(0.08) probably_damaging(0.922) TCGA-EJ-A8FS-01 10 7745433 7745433 T A ITIH2 Missense_Mutation p.F12L 0.27 tolerated(0.39) benign(0.007) TCGA-EJ-A8FS-01 12 130647988 130647988 G A FZD10 Silent p.P167P 0.16 TCGA-EJ-A8FS-01 14 104212714 104212714 T C PPP1R13B Silent p.K382K 0.45 TCGA-EJ-A8FS-01 14 22933250 22933250 G C TRDC Missense_Mutation p.R134P 0.21 deleterious(0) probably_damaging(1) TCGA-EJ-A8FS-01 15 42059483 42059483 A C MGA 3'UTR 0.35 TCGA-EJ-A8FS-01 15 43500934 43500934 G A EPB42 Missense_Mutation p.T321M 0.36 deleterious(0.04) benign(0.202) TCGA-EJ-A8FS-01 16 15808890 15808890 C T MYH11 Missense_Mutation p.E1895K 0.25 probably_damaging(0.998) TCGA-EJ-A8FS-01 16 3713497 3713497 T G TRAP1 Missense_Mutation p.K546Q 0.29 tolerated(0.27) benign(0.057) TCGA-EJ-A8FS-01 17 47696643 47696643 A G SPOP Missense_Mutation p.F102S 0.42 deleterious(0) probably_damaging(1) TCGA-EJ-A8FS-01 18 5428394 5428394 C T EPB41L3 Missense_Mutation p.R328Q 0.33 deleterious(0) probably_damaging(1) TCGA-EJ-A8FS-01 18 56246451 56246451 T A ALPK2 Missense_Mutation p.R519S 0.31 tolerated(0.13) benign(0.126) TCGA-EJ-A8FS-01 19 12986907 12986907 C A DNASE2 Missense_Mutation p.C327F 0.38 deleterious(0) probably_damaging(1) TCGA-EJ-A8FS-01 19 36278974 36278974 C T ARHGAP33 Silent p.Y1008Y 0.35 TCGA-EJ-A8FS-01 19 41595990 41595990 C T CYP2A13 Missense_Mutation p.R128W 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-EJ-A8FS-01 1 155429593 155429593 G C ASH1L Nonsense_Mutation p.S1694* 0.29 TCGA-EJ-A8FS-01 1 204589109 204589109 G A LRRN2 Silent p.L4L 0.38 TCGA-EJ-A8FS-01 1 206566160 206566160 C T SRGAP2 Missense_Mutation p.R115W 0.18 deleterious(0.01) possibly_damaging(0.772) TCGA-EJ-A8FS-01 1 229580721 229580721 G A NUP133 Missense_Mutation p.P1092S 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-EJ-A8FS-01 20 58519620 58519620 C - FAM217B Frame_Shift_Del p.T210Lfs*9 0.34 TCGA-EJ-A8FS-01 21 44190855 44190855 G T PDE9A Nonsense_Mutation p.E545* 0.75 TCGA-EJ-A8FS-01 22 21363573 21363573 G A AC002472.1 5'Flank 0.17 TCGA-EJ-A8FS-01 2 119727707 119727707 C T MARCO Missense_Mutation p.R73W 0.31 tolerated(0.05) probably_damaging(0.973) TCGA-EJ-A8FS-01 2 238402143 238402143 A T MLPH Missense_Mutation p.D25V 0.24 deleterious(0) probably_damaging(1) TCGA-EJ-A8FS-01 2 63282953 63282953 G A OTX1 Silent p.A189A 0.35 TCGA-EJ-A8FS-01 3 50255182 50255182 C T SLC38A3 RNA 0.33 TCGA-EJ-A8FS-01 4 187540591 187540591 G A FAT1 Silent p.L2383L 0.29 TCGA-EJ-A8FS-01 4 40123039 40123039 C A N4BP2 Nonsense_Mutation p.S1103* 0.32 TCGA-EJ-A8FS-01 4 40351353 40351353 A G CHRNA9 Missense_Mutation p.T274A 0.35 deleterious(0) probably_damaging(1) TCGA-EJ-A8FS-01 5 112174658 112174658 C T APC Nonsense_Mutation p.Q1123* 0.39 TCGA-EJ-A8FS-01 5 137802637 137802637 C G EGR1 Missense_Mutation p.P167A 0.38 tolerated(0.15) benign(0) TCGA-EJ-A8FS-01 5 140215504 140215504 G T PCDHA7 Silent p.A512A 0.37 TCGA-EJ-A8FS-01 5 32089032 32089032 T C PDZD2 Silent p.P1826P 0.38 TCGA-EJ-A8FS-01 5 83239229 83239229 A G EDIL3 3'UTR 0.38 TCGA-EJ-A8FS-01 6 111288987 111288987 G A GTF3C6 Silent p.L212L 0.09 TCGA-EJ-A8FS-01 6 112671567 112671568 - T RFPL4B Frame_Shift_Ins p.D222* 0.31 TCGA-EJ-A8FS-01 6 155565186 155565186 G C TIAM2 Missense_Mutation p.Q1130H 0.38 deleterious(0.01) probably_damaging(0.941) TCGA-EJ-A8FS-01 7 141385300 141385300 G C KIAA1147 Missense_Mutation p.H169D 0.40 tolerated(0.29) benign(0.001) TCGA-EJ-A8FS-01 8 73849587 73849587 C T KCNB2 Missense_Mutation p.T666M 0.38 tolerated_low_confidence(0.27) benign(0.254) TCGA-EJ-A8FS-01 9 104309224 104309225 AC - RNF20 Frame_Shift_Del p.H291Lfs*14 0.36 TCGA-EJ-A8FS-01 9 106876995 106876995 G C SMC2 Missense_Mutation p.R519T 0.32 tolerated(0.21) possibly_damaging(0.457) TCGA-EJ-A8FU-01 12 117624369 117624369 C T FBXO21 Missense_Mutation p.C128Y 0.08 deleterious(0.03) possibly_damaging(0.563) TCGA-EJ-A8FU-01 13 32747510 32747510 G A FRY Missense_Mutation p.A720T 0.07 tolerated(0.57) benign(0.003) TCGA-EJ-A8FU-01 1 240492719 240492719 G T FMN2 Missense_Mutation p.S1463I 0.06 possibly_damaging(0.515) TCGA-EJ-A8FU-01 22 24530349 24530349 C G CABIN1 Silent p.L1571L 0.13 TCGA-EJ-A8FU-01 22 25753228 25753228 C G LRP5L Missense_Mutation p.K144N 0.10 deleterious(0.01) possibly_damaging(0.8) TCGA-EJ-A8FU-01 2 71654016 71654016 G T ZNF638 Missense_Mutation p.D1673Y 0.04 deleterious(0) probably_damaging(0.999) TCGA-EJ-A8FU-01 3 2944670 2944670 C T CNTN4 Silent p.N396N 0.07 TCGA-EJ-A8FU-01 4 89042815 89042815 C T ABCG2 Missense_Mutation p.A221T 0.07 tolerated(0.16) probably_damaging(0.948) TCGA-EJ-A8FU-01 7 102953049 102953049 T C DNAJC2 Silent p.E611E 0.06 TCGA-EJ-A8FU-01 8 133764058 133764058 C T TMEM71 Missense_Mutation p.S96N 0.05 deleterious(0.02) possibly_damaging(0.76) TCGA-EJ-A8FU-01 8 98289030 98289030 C T TSPYL5 Missense_Mutation p.R348H 0.04 tolerated(0.49) benign(0.028) TCGA-EJ-A8FU-01 9 130688198 130688198 G A PIP5KL1 Silent p.P237P 0.05 TCGA-EJ-AB20-01 11 60285574 60285574 C T MS4A13 Silent p.H6H 0.19 TCGA-EJ-AB20-01 11 70009403 70009403 C T ANO1 Missense_Mutation p.P636L 0.23 deleterious(0) probably_damaging(1) TCGA-EJ-AB20-01 11 71727189 71727189 G A NUMA1 Missense_Mutation p.R454W 0.09 possibly_damaging(0.828) TCGA-EJ-AB20-01 12 12814629 12814629 T C GPR19 Missense_Mutation p.R252G 0.06 deleterious(0.01) possibly_damaging(0.882) TCGA-EJ-AB20-01 13 42249395 42249395 G C VWA8 Silent p.V1455V 0.10 TCGA-EJ-AB20-01 19 9407214 9407214 C T ZNF699 Missense_Mutation p.S289N 0.14 tolerated(0.28) probably_damaging(0.929) TCGA-EJ-AB20-01 1 179380298 179380298 A G AXDND1 Missense_Mutation p.H376R 0.08 tolerated(0.61) possibly_damaging(0.803) TCGA-EJ-AB20-01 1 99772424 99772424 C T LPPR4 Missense_Mutation p.T717M 0.39 tolerated(0.1) benign(0.323) TCGA-EJ-AB20-01 3 153840317 153840317 C T ARHGEF26 Missense_Mutation p.A179V 0.07 tolerated_low_confidence(0.46) benign(0.002) TCGA-EJ-AB20-01 3 49094842 49094842 G A QRICH1 Missense_Mutation p.P264L 0.28 tolerated(0.09) benign(0.013) TCGA-EJ-AB20-01 4 186545479 186545479 G A SORBS2 Silent p.N464N 0.35 TCGA-EJ-AB20-01 5 149915370 149915370 C T NDST1 Missense_Mutation p.R454C 0.33 deleterious(0) possibly_damaging(0.766) TCGA-EJ-AB20-01 5 81548458 81548458 G A ATG10 Silent p.K177K 0.06 TCGA-EJ-AB20-01 6 111995769 111995769 C A FYN Missense_Mutation p.K446N 0.10 deleterious(0.03) probably_damaging(1) TCGA-EJ-AB20-01 7 73478019 73478019 C A ELN Missense_Mutation p.L663I 0.04 unknown(0) TCGA-EJ-AB20-01 8 11189417 11189421 ACATG - SLC35G5 Frame_Shift_Del p.T268Cfs*34 0.18 TCGA-EJ-AB27-01 10 118464682 118464682 C T HSPA12A Silent p.P78P 0.07 TCGA-EJ-AB27-01 10 16870875 16870875 C T CUBN Missense_Mutation p.V3565I 0.09 tolerated(0.32) benign(0.02) TCGA-EJ-AB27-01 10 33474632 33474632 G A NRP1 Silent p.I785I 0.06 TCGA-EJ-AB27-01 11 111709038 111709038 G A ALG9 Silent p.L249L 0.16 TCGA-EJ-AB27-01 11 17415834 17415834 C T ABCC8 Silent p.T1508T 0.06 TCGA-EJ-AB27-01 11 65482370 65482370 C T KAT5 Missense_Mutation p.R340C 0.09 deleterious(0) probably_damaging(0.999) TCGA-EJ-AB27-01 13 31035786 31035786 C A HMGB1 Intron 0.27 TCGA-EJ-AB27-01 15 45365863 45365863 T G SORD 3'UTR 0.31 TCGA-EJ-AB27-01 17 35902595 35902595 T C SYNRG Missense_Mutation p.Y894C 0.09 tolerated_low_confidence(0.13) benign(0.003) TCGA-EJ-AB27-01 17 54940143 54940143 G A DGKE Silent p.A565A 0.09 TCGA-EJ-AB27-01 18 29706716 29706716 G A RNF138 Missense_Mutation p.V208I 0.06 tolerated(0.49) benign(0.026) TCGA-EJ-AB27-01 18 70461400 70461400 G A NETO1 Silent p.S197S 0.06 TCGA-EJ-AB27-01 18 72589312 72589312 G A ZNF407 Silent p.T1679T 0.07 TCGA-EJ-AB27-01 19 19766138 19766138 G A ATP13A1 Silent p.A507A 0.10 TCGA-EJ-AB27-01 20 54573597 54573597 A G CBLN4 3'UTR 0.23 TCGA-EJ-AB27-01 21 30354640 30354640 C T LTN1 Silent p.P255P 0.09 TCGA-EJ-AB27-01 2 152474877 152474877 C T NEB Missense_Mutation p.R3663H 0.04 probably_damaging(0.994) TCGA-EJ-AB27-01 2 28752222 28752222 C A PLB1 Missense_Mutation p.P122T 0.11 tolerated(0.7) benign(0.012) TCGA-EJ-AB27-01 3 69987117 69987117 C T MITF Missense_Mutation p.H167Y 0.18 deleterious(0.01) probably_damaging(0.959) TCGA-EJ-AB27-01 3 99569630 99569630 G A FILIP1L Missense_Mutation p.T297M 0.04 tolerated(0.09) benign(0.238) TCGA-EJ-AB27-01 4 68500187 68500187 G A UBA6 Missense_Mutation p.P631L 0.10 deleterious(0) probably_damaging(1) TCGA-EJ-AB27-01 5 140531962 140531962 G A PCDHB6 Silent p.A708A 0.06 TCGA-EJ-AB27-01 6 75994253 75994253 T G TMEM30A Missense_Mutation p.K34N 0.16 deleterious(0) probably_damaging(0.95) TCGA-EJ-AB27-01 7 130038878 130038878 G A CEP41 Nonsense_Mutation p.R326* 0.06 TCGA-EJ-AB27-01 7 142569697 142569697 G A TRPV6 Silent p.Y647Y 0.05 TCGA-EJ-AB27-01 7 47920349 47920349 G A PKD1L1 Missense_Mutation p.T1166M 0.10 tolerated(0.25) possibly_damaging(0.876) TCGA-EJ-AB27-01 7 99051618 99051618 G A CPSF4 Silent p.S200S 0.04 TCGA-EJ-AB27-01 8 86389399 86389399 A T CA2 Missense_Mutation p.E186D 0.05 tolerated(0.35) benign(0.001) TCGA-EJ-AB27-01 9 137688229 137688229 G A COL5A1 Missense_Mutation p.G937R 0.05 unknown(0) TCGA-EJ-AB27-01 X 153609503 153609503 C T EMD Silent p.I237I 0.29 TCGA-FC-7708-01 10 73574941 73574941 A C CDH23 Missense_Mutation p.E1084A 0.25 deleterious_low_confidence(0.01) benign(0.034) TCGA-FC-7708-01 12 112673539 112673539 G A HECTD4 Missense_Mutation p.L1686F 0.17 probably_damaging(0.921) TCGA-FC-7708-01 12 52756045 52756045 C T KRT85 Missense_Mutation p.E430K 0.22 deleterious(0.01) benign(0.411) TCGA-FC-7708-01 12 58002362 58002362 G A DTX3 Silent p.P270P 0.04 TCGA-FC-7708-01 12 69085781 69085781 G T NUP107 Missense_Mutation p.A113S 0.12 tolerated_low_confidence(0.62) benign(0.016) TCGA-FC-7708-01 13 113854766 113854766 G - PCID2 Frame_Shift_Del p.P34Lfs*33 0.25 TCGA-FC-7708-01 13 46918950 46918950 C A KIAA0226L Missense_Mutation p.G601V 0.10 deleterious(0.01) probably_damaging(0.943) TCGA-FC-7708-01 14 24619808 24619809 - G RNF31 Frame_Shift_Ins p.D402Gfs*35 0.12 TCGA-FC-7708-01 14 52520915 52520915 G A NID2 Missense_Mutation p.R298C 0.18 tolerated(0.08) benign(0.443) TCGA-FC-7708-01 15 40915989 40915989 G A CASC5 Missense_Mutation p.C1202Y 0.18 tolerated(1) benign(0.013) TCGA-FC-7708-01 15 62320582 62320582 G A VPS13C Silent p.N141N 0.12 TCGA-FC-7708-01 16 24581275 24581275 C A RBBP6 Silent p.P1088P 0.11 TCGA-FC-7708-01 17 6941915 6941915 T A SLC16A13 Missense_Mutation p.L263H 0.09 deleterious(0) probably_damaging(0.926) TCGA-FC-7708-01 19 36728180 36728180 A T ZNF146 Nonsense_Mutation p.K280* 0.09 TCGA-FC-7708-01 1 100598706 100598706 G A TRMT13 5'Flank 0.12 TCGA-FC-7708-01 1 156565214 156565214 T C GPATCH4 Missense_Mutation p.K307E 0.13 tolerated_low_confidence(0.69) benign(0.001) TCGA-FC-7708-01 1 161479821 161479821 C A FCGR2A Silent p.G192G 0.12 TCGA-FC-7708-01 1 167973820 167973820 T C DCAF6 Silent p.S389S 0.12 TCGA-FC-7708-01 1 211534503 211534503 C T TRAF5 Missense_Mutation p.T232M 0.14 tolerated(0.09) benign(0.002) TCGA-FC-7708-01 1 22200471 22200471 G A HSPG2 Silent p.G1230G 0.14 TCGA-FC-7708-01 2 192863886 192863886 G A TMEFF2 Silent p.C195C 0.16 TCGA-FC-7708-01 2 219353074 219353074 G T USP37 Missense_Mutation p.P515T 0.08 tolerated(0.88) benign(0.026) TCGA-FC-7708-01 2 225370686 225370686 T C CUL3 Missense_Mutation p.K398R 0.04 tolerated(0.22) possibly_damaging(0.539) TCGA-FC-7708-01 2 98351131 98351131 C T ZAP70 Silent p.C346C 0.22 TCGA-FC-7708-01 3 132196839 132196839 A G DNAJC13 Missense_Mutation p.N855S 0.17 tolerated(0.07) possibly_damaging(0.677) TCGA-FC-7708-01 3 38766807 38766807 T C SCN10A Splice_Site p.X1030_splice 0.18 TCGA-FC-7708-01 4 110437762 110437762 A G SEC24B Missense_Mutation p.I698V 0.10 tolerated(1) benign(0.004) TCGA-FC-7708-01 4 47427856 47427856 C T GABRB1 Missense_Mutation p.R416C 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-FC-7708-01 4 52869403 52869403 G A LRRC66 Missense_Mutation p.L218F 0.08 deleterious(0.01) probably_damaging(0.983) TCGA-FC-7708-01 5 149754668 149754668 G A TCOF1 Missense_Mutation p.S477N 0.11 deleterious(0) possibly_damaging(0.757) TCGA-FC-7708-01 6 26216686 26216706 GATGCCCATGGCCTTGGATGA - HIST1H2BG In_Frame_Del p.S56_I62del 0.10 TCGA-FC-7708-01 6 34738121 34738121 A T SNRPC Missense_Mutation p.M102L 0.14 tolerated(0.32) unknown(0) TCGA-FC-7708-01 6 43023654 43023654 G A MRPL2 Silent p.A204A 0.09 TCGA-FC-7708-01 6 56470845 56470845 C G DST Intron 0.09 TCGA-FC-7708-01 6 94120325 94120325 C T EPHA7 Silent p.A242A 0.11 TCGA-FC-7708-01 8 61777895 61777895 G A CHD7 Missense_Mutation p.M2799I 0.17 benign(0.01) TCGA-FC-7708-01 9 71395167 71395167 C G FAM122A Silent p.G29G 0.14 TCGA-FC-7708-01 X 119005974 119007263 X:119005974-119007263 - NDUFA1 large deletion p.X35_splice 0.21 TCGA-FC-7708-01 X 131212858 131212858 G T FRMD7 Missense_Mutation p.S396Y 0.27 deleterious(0) possibly_damaging(0.864) TCGA-FC-7961-01 10 106075334 106075334 C T ITPRIP Missense_Mutation p.R159H 0.05 deleterious(0) probably_damaging(0.985) TCGA-FC-7961-01 10 89717695 89717696 - T PTEN Frame_Shift_Ins p.E242* 0.31 TCGA-FC-7961-01 11 106810483 106810483 C T GUCY1A2 Silent p.K303K 0.20 TCGA-FC-7961-01 11 118343036 118343037 - A KMT2A Frame_Shift_Ins p.E390Rfs*34 0.13 TCGA-FC-7961-01 11 64326610 64326610 G A SLC22A11 Missense_Mutation p.D133N 0.25 tolerated(0.07) possibly_damaging(0.533) TCGA-FC-7961-01 11 7437324 7437324 G T SYT9 Missense_Mutation p.A366S 0.26 deleterious(0.01) possibly_damaging(0.641) TCGA-FC-7961-01 11 75146556 75146556 C T GDPD5 Missense_Mutation p.R605H 0.16 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-FC-7961-01 12 53509947 53509947 C T SOAT2 Nonsense_Mutation p.R259* 0.09 TCGA-FC-7961-01 12 6138600 6138600 C G VWF Missense_Mutation p.G959R 0.15 deleterious(0) probably_damaging(0.999) TCGA-FC-7961-01 12 6703665 6703665 G A CHD4 Missense_Mutation p.T758I 0.29 deleterious(0) benign(0.181) TCGA-FC-7961-01 13 25744275 25744275 G T AMER2 Silent p.R495R 0.14 TCGA-FC-7961-01 14 106967145 106967145 G T IGHV1-46 Silent p.G85G 0.23 TCGA-FC-7961-01 14 62233593 62233593 G T SNAPC1 Splice_Site p.X43_splice 0.36 TCGA-FC-7961-01 15 50158587 50158587 C T ATP8B4 Missense_Mutation p.S1041N 0.25 tolerated(0.07) benign(0.017) TCGA-FC-7961-01 16 31213495 31213495 C T PYCARD Missense_Mutation p.A102T 0.28 tolerated(0.47) benign(0.032) TCGA-FC-7961-01 16 4165101 4165101 G A ADCY9 Missense_Mutation p.R115W 0.17 deleterious(0) probably_damaging(0.997) TCGA-FC-7961-01 17 32614743 32614743 G T CCL11 3'UTR 0.28 TCGA-FC-7961-01 17 47696425 47696425 A C SPOP Missense_Mutation p.F133C 0.19 deleterious(0.01) probably_damaging(1) TCGA-FC-7961-01 17 53040259 53040259 T G COX11 Missense_Mutation p.E222D 0.10 deleterious(0.03) possibly_damaging(0.856) TCGA-FC-7961-01 17 58300782 58300782 T G USP32 Missense_Mutation p.E533A 0.31 tolerated(0.37) benign(0.325) TCGA-FC-7961-01 17 6353755 6353755 A C FAM64A 3'UTR 0.20 TCGA-FC-7961-01 18 28576863 28576863 C T DSC3 Missense_Mutation p.G796E 0.22 deleterious(0) probably_damaging(0.941) TCGA-FC-7961-01 19 50028719 50028719 C G FCGRT Missense_Mutation p.P293A 0.09 tolerated(0.06) benign(0.214) TCGA-FC-7961-01 19 53993793 53993793 G C ZNF813 Missense_Mutation p.E103Q 0.25 deleterious(0.01) probably_damaging(0.931) TCGA-FC-7961-01 19 56424212 56424212 T G NLRP13 Missense_Mutation p.E324A 0.20 tolerated(0.2) benign(0.144) TCGA-FC-7961-01 19 57065054 57065054 C G ZFP28 Silent p.G300G 0.13 TCGA-FC-7961-01 1 120480514 120480514 G - NOTCH2 Frame_Shift_Del p.N1102Mfs*6 0.26 TCGA-FC-7961-01 1 152857072 152857072 C T SMCP Silent p.C58C 0.08 TCGA-FC-7961-01 1 200376763 200376763 G C ZNF281 Missense_Mutation p.Q691E 0.03 tolerated(0.16) probably_damaging(0.952) TCGA-FC-7961-01 1 200376772 200376772 G C ZNF281 Missense_Mutation p.H688D 0.04 tolerated(0.17) benign(0.031) TCGA-FC-7961-01 1 214837140 214837140 G C CENPF 3'UTR 0.27 TCGA-FC-7961-01 1 9031007 9031007 C T CA6 Missense_Mutation p.H271Y 0.15 tolerated(0.07) possibly_damaging(0.479) TCGA-FC-7961-01 22 21213381 21213381 G A SNAP29 5'UTR 0.11 TCGA-FC-7961-01 2 166246006 166246006 C T SCN2A Missense_Mutation p.T1897M 0.17 deleterious(0) probably_damaging(1) TCGA-FC-7961-01 2 215645757 215645757 G A BARD1 Missense_Mutation p.P281S 0.30 tolerated(0.14) benign(0.086) TCGA-FC-7961-01 2 242039186 242039186 C A MTERFD2 Nonsense_Mutation p.G49* 0.08 TCGA-FC-7961-01 2 54895540 54895540 A G SPTBN1 Missense_Mutation p.K2310R 0.29 tolerated(0.4) benign(0.002) TCGA-FC-7961-01 3 113172713 113172713 T C SPICE1 Missense_Mutation p.E581G 0.04 tolerated(0.06) benign(0.046) TCGA-FC-7961-01 3 119134256 119134256 G C ARHGAP31 Missense_Mutation p.Q1160H 0.39 deleterious(0.04) benign(0.017) TCGA-FC-7961-01 3 13921347 13921347 C T WNT7A 5'UTR 0.10 TCGA-FC-7961-01 3 8787407 8787407 G C CAV3 Missense_Mutation p.V104L 0.12 deleterious(0.01) benign(0.357) TCGA-FC-7961-01 3 9783062 9783063 - G BRPF1 Frame_Shift_Ins p.E599Gfs*63 0.34 TCGA-FC-7961-01 4 170625290 170625290 A T CLCN3 Missense_Mutation p.I569F 0.07 deleterious(0) benign(0.395) TCGA-FC-7961-01 4 5016839 5016839 C A CYTL1 3'UTR 0.18 TCGA-FC-7961-01 4 6594976 6594980 CCTGT - MAN2B2 Frame_Shift_Del p.P253Hfs*35 0.13 TCGA-FC-7961-01 5 140257020 140257020 G A PCDHA12 Missense_Mutation p.G655S 0.05 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-FC-7961-01 5 140531641 140531641 G A PCDHB6 Silent p.S601S 0.20 TCGA-FC-7961-01 5 140784549 140784549 G T PCDHGA9 Missense_Mutation p.S677I 0.14 deleterious_low_confidence(0) benign(0.392) TCGA-FC-7961-01 5 169015536 169015536 A T SPDL1 Missense_Mutation p.N39I 0.25 deleterious(0.02) benign(0.021) TCGA-FC-7961-01 6 161653264 161653264 T C AGPAT4 5'UTR 0.19 TCGA-FC-7961-01 6 29627139 29627139 G C MOG Silent p.L44L 0.24 TCGA-FC-7961-01 6 33656197 33656197 G A ITPR3 Missense_Mutation p.R2186H 0.08 deleterious(0) benign(0.048) TCGA-FC-7961-01 6 38545497 38545497 T A BTBD9 Splice_Site p.X345_splice 0.07 TCGA-FC-7961-01 7 48146608 48146608 T C UPP1 Missense_Mutation p.L192P 0.21 tolerated(0.21) benign(0.176) TCGA-FC-7961-01 8 126030321 126030321 G A SQLE Missense_Mutation p.A409T 0.31 deleterious(0) probably_damaging(0.999) TCGA-FC-7961-01 8 143558527 143558527 C T BAI1 Silent p.C370C 0.18 TCGA-FC-7961-01 8 25341516 25341516 A C CDCA2 Silent p.L385L 0.27 TCGA-FC-7961-01 8 25341608 25341608 A T CDCA2 Missense_Mutation p.K416I 0.24 deleterious(0) probably_damaging(0.995) TCGA-FC-7961-01 9 134889831 134889831 T C MED27 Silent p.A124A 0.15 TCGA-FC-7961-01 9 35662653 35662653 A G ARHGEF39 Silent p.D253D 0.23 TCGA-FC-7961-01 9 35725562 35725562 G A TLN1 Missense_Mutation p.P44S 0.33 tolerated(0.05) benign(0.003) TCGA-FC-7961-01 9 5185354 5185354 C T INSL6 Silent p.P83P 0.07 TCGA-FC-7961-01 X 123480444 123480444 C A SH2D1A 5'UTR 0.08 TCGA-FC-7961-01 X 134856853 134856853 A G CT45A1 3'UTR 0.03 TCGA-FC-7961-01 X 24075812 24075812 T C EIF2S3 Silent p.S108S 0.11 TCGA-FC-A4JI-01 10 128973673 128973673 C T FAM196A Silent p.P329P 0.45 TCGA-FC-A4JI-01 11 124742974 124742974 G A ROBO3 Missense_Mutation p.A509T 0.17 tolerated(1) benign(0.021) TCGA-FC-A4JI-01 11 62572888 62572888 A G NXF1 5'UTR 0.65 TCGA-FC-A4JI-01 12 1025570 1025570 G A RAD52 Missense_Mutation p.R269W 0.12 deleterious(0.02) benign(0.226) TCGA-FC-A4JI-01 12 124421493 124421493 G A CCDC92 3'UTR 0.38 TCGA-FC-A4JI-01 12 50536935 50536935 A G CERS5 Missense_Mutation p.V119A 0.38 tolerated(0.05) benign(0.008) TCGA-FC-A4JI-01 13 25480341 25480341 C T CENPJ Missense_Mutation p.R612Q 0.20 deleterious(0.04) benign(0.309) TCGA-FC-A4JI-01 13 41767137 41767137 T - KBTBD7 Frame_Shift_Del p.D420Ifs*32 0.15 TCGA-FC-A4JI-01 13 77853046 77853046 T C MYCBP2 Missense_Mutation p.I161V 0.28 possibly_damaging(0.651) TCGA-FC-A4JI-01 14 24769365 24769365 C T NOP9 Silent p.L69L 0.32 TCGA-FC-A4JI-01 14 38061215 38061235 GCAGCCGTTCTCGAACATGTT - FOXA1 In_Frame_Del p.N252_C258del 0.42 TCGA-FC-A4JI-01 15 43701249 43701249 G A TP53BP1 Nonsense_Mutation p.R1816* 0.15 TCGA-FC-A4JI-01 17 18023051 18023051 G A MYO15A Missense_Mutation p.E313K 0.33 benign(0.305) TCGA-FC-A4JI-01 17 35479506 35479506 T C ACACA Missense_Mutation p.T2029A 0.21 tolerated(0.06) benign(0.014) TCGA-FC-A4JI-01 17 66519943 66519943 T C PRKAR1A Silent p.D142D 0.37 TCGA-FC-A4JI-01 17 78320681 78320681 C T RNF213 Missense_Mutation p.A2849V 0.24 probably_damaging(0.999) TCGA-FC-A4JI-01 18 74620423 74620423 A G ZNF236 Silent p.A813A 0.49 TCGA-FC-A4JI-01 19 43439764 43439764 G A PSG7 Silent p.D74D 0.24 TCGA-FC-A4JI-01 19 54444869 54444869 G A CACNG7 Silent p.E190E 0.05 TCGA-FC-A4JI-01 1 1688005 1688005 G A NADK Missense_Mutation p.P291S 0.08 deleterious(0.03) benign(0.18) TCGA-FC-A4JI-01 1 17599873 17599873 G C PADI3 Missense_Mutation p.K362N 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-FC-A4JI-01 1 2082320 2082320 G A PRKCZ Missense_Mutation p.R260H 0.08 deleterious(0.02) probably_damaging(0.995) TCGA-FC-A4JI-01 1 241964635 241964635 A G WDR64 3'UTR 0.38 TCGA-FC-A4JI-01 1 75805314 75805314 A G SLC44A5 Silent p.G18G 0.20 TCGA-FC-A4JI-01 2 145156431 145156431 A G ZEB2 Silent p.L775L 0.22 TCGA-FC-A4JI-01 2 170068629 170068629 G A LRP2 Silent p.C2043C 0.19 TCGA-FC-A4JI-01 2 209036736 209036736 C A C2orf80 Missense_Mutation p.A144S 0.25 deleterious(0) probably_damaging(0.999) TCGA-FC-A4JI-01 2 220162005 220162005 C T PTPRN Missense_Mutation p.E680K 0.54 deleterious(0) probably_damaging(0.999) TCGA-FC-A4JI-01 2 69092997 69092997 G A BMP10 Silent p.Y347Y 0.30 TCGA-FC-A4JI-01 2 80530543 80530543 C T LRRTM1 Silent p.R134R 0.41 TCGA-FC-A4JI-01 3 40547811 40547811 C G ZNF620 5'UTR 0.41 TCGA-FC-A4JI-01 3 50289913 50289913 G C GNAI2 Missense_Mutation p.M82I 0.36 tolerated(0.5) probably_damaging(0.968) TCGA-FC-A4JI-01 4 3234976 3234976 C T HTT Silent p.H2784H 0.22 TCGA-FC-A4JI-01 5 43624173 43624173 G A NNT Missense_Mutation p.A243T 0.39 deleterious(0) probably_damaging(0.917) TCGA-FC-A4JI-01 6 135787209 135787209 G A AHI1 Silent p.G164G 0.29 TCGA-FC-A4JI-01 6 17828567 17828567 T C KIF13A Missense_Mutation p.D479G 0.56 deleterious(0) probably_damaging(1) TCGA-FC-A4JI-01 7 135282771 135282771 G A NUP205 Missense_Mutation p.R697Q 0.19 deleterious(0.01) probably_damaging(0.967) TCGA-FC-A4JI-01 7 48019119 48019119 C T HUS1 5'UTR 0.10 TCGA-FC-A4JI-01 7 4824568 4824568 C G AP5Z1 Missense_Mutation p.L274V 0.26 tolerated(0.84) benign(0.005) TCGA-FC-A4JI-01 7 57528490 57528490 A T ZNF716 Missense_Mutation p.Q108L 0.21 deleterious(0) probably_damaging(0.99) TCGA-FC-A4JI-01 8 134488066 134488066 G A ST3GAL1 Missense_Mutation p.R68C 0.17 benign(0.394) TCGA-FC-A4JI-01 8 74601015 74601015 T C STAU2 Missense_Mutation p.T50A 0.23 tolerated(0.27) benign(0.023) TCGA-FC-A4JI-01 X 54957661 54957661 C G TRO 3'UTR 0.64 TCGA-FC-A5OB-01 11 124016065 124016065 A G VWA5A Missense_Mutation p.H759R 0.49 tolerated(0.37) benign(0.001) TCGA-FC-A5OB-01 11 133814172 133814172 G A IGSF9B Silent p.L118L 0.08 TCGA-FC-A5OB-01 11 92577146 92577146 G A FAT3 Missense_Mutation p.R3538H 0.04 benign(0.005) TCGA-FC-A5OB-01 12 106500261 106500261 G C NUAK1 Missense_Mutation p.Q95E 0.07 deleterious(0.04) benign(0.378) TCGA-FC-A5OB-01 12 130919341 130919341 C A RIMBP2 Missense_Mutation p.D714Y 0.04 deleterious(0.02) benign(0.125) TCGA-FC-A5OB-01 12 64491035 64491035 G A SRGAP1 Missense_Mutation p.A565T 0.12 tolerated(0.61) benign(0.008) TCGA-FC-A5OB-01 13 103701637 103701637 A G SLC10A2 Splice_Site p.X307_splice 0.04 TCGA-FC-A5OB-01 14 93651636 93651636 C T TMEM251 5'UTR 0.28 TCGA-FC-A5OB-01 15 28359926 28359926 C T HERC2 Missense_Mutation p.G4582E 0.17 probably_damaging(0.955) TCGA-FC-A5OB-01 15 33261413 33261413 G T FMN1 Missense_Mutation p.P607H 0.42 deleterious(0) unknown(0) TCGA-FC-A5OB-01 15 40501921 40501921 G A BUB1B Silent p.L743L 0.39 TCGA-FC-A5OB-01 16 1537738 1537738 C T PTX4 Silent p.L120L 0.40 TCGA-FC-A5OB-01 17 15207265 15207265 G A TEKT3 Silent p.V487V 0.37 TCGA-FC-A5OB-01 17 39974421 39974421 G T FKBP10 Missense_Mutation p.V158L 0.49 deleterious(0.02) benign(0.014) TCGA-FC-A5OB-01 17 722762 722762 T C NXN Missense_Mutation p.Y246C 0.31 tolerated(0.07) probably_damaging(0.992) TCGA-FC-A5OB-01 17 72858969 72858969 A C FDXR Silent p.P525P 0.07 TCGA-FC-A5OB-01 18 30093139 30093139 C T WBP11P1 RNA 0.50 TCGA-FC-A5OB-01 19 18704899 18704899 A G CRLF1 Missense_Mutation p.S411P 0.36 tolerated_low_confidence(0.23) benign(0) TCGA-FC-A5OB-01 19 21299769 21299769 A T ZNF714 Missense_Mutation p.K100I 0.36 tolerated(0.06) benign(0.001) TCGA-FC-A5OB-01 19 35793406 35793406 G A MAG Silent p.T342T 0.35 TCGA-FC-A5OB-01 1 161206260 161206260 C G NR1I3 Missense_Mutation p.K32N 0.41 deleterious(0) probably_damaging(0.986) TCGA-FC-A5OB-01 20 62328731 62328731 T A TNFRSF6B Missense_Mutation p.S159T 0.32 deleterious(0) possibly_damaging(0.838) TCGA-FC-A5OB-01 22 20748820 20748820 C T ZNF74 5'UTR 0.18 TCGA-FC-A5OB-01 22 37602836 37602836 C T SSTR3 Missense_Mutation p.R336H 0.34 tolerated(0.08) benign(0.006) TCGA-FC-A5OB-01 2 220329189 220329189 C T SPEG Missense_Mutation p.R914W 0.27 probably_damaging(0.998) TCGA-FC-A5OB-01 2 70520812 70520812 T C SNRPG 5'UTR 0.12 TCGA-FC-A5OB-01 3 165491240 165491240 T - BCHE Frame_Shift_Del p.N580Ifs*3 0.61 TCGA-FC-A5OB-01 3 170624851 170624851 C T EIF5A2 Missense_Mutation p.G66D 0.09 deleterious(0) benign(0.409) TCGA-FC-A5OB-01 3 20215804 20215804 T G SGOL1 Silent p.R407R 0.08 TCGA-FC-A5OB-01 5 170640699 170640699 A G RANBP17 Missense_Mutation p.T766A 0.43 deleterious(0.05) benign(0.003) TCGA-FC-A5OB-01 6 52268717 52268717 C T PAQR8 Missense_Mutation p.H236Y 0.07 tolerated(1) possibly_damaging(0.765) TCGA-FC-A5OB-01 6 52268889 52268889 C T PAQR8 Missense_Mutation p.T293M 0.08 deleterious(0) probably_damaging(0.998) TCGA-FC-A5OB-01 6 54186159 54186159 G T TINAG Nonsense_Mutation p.E162* 0.08 TCGA-FC-A5OB-01 7 130357704 130357704 G A TSGA13 Nonsense_Mutation p.Q134* 0.10 TCGA-FC-A5OB-01 7 77221501 77221502 - A PTPN12 Frame_Shift_Ins p.C143Mfs*2 0.26 TCGA-FC-A5OB-01 7 99474462 99474462 C T OR2AE1 Silent p.Q65Q 0.41 TCGA-FC-A5OB-01 X 49072961 49072961 T G CACNA1F Silent p.G1050G 0.93 TCGA-FC-A66V-01 14 38060702 38060702 G A FOXA1 Silent p.Y429Y 0.06 TCGA-FC-A66V-01 22 29628273 29628273 C T EMID1 Silent p.G235G 0.05 TCGA-FC-A6HD-01 11 17741316 17741316 G T MYOD1 5'UTR 0.05 TCGA-FC-A6HD-01 12 11339091 11339091 A T TAS2R42 Missense_Mutation p.F151L 0.09 tolerated(0.4) benign(0.013) TCGA-FC-A6HD-01 12 113539707 113539707 G A RASAL1 Missense_Mutation p.R739W 0.10 deleterious(0) probably_damaging(0.91) TCGA-FC-A6HD-01 12 118474220 118474220 G C WSB2 Silent p.A252A 0.18 TCGA-FC-A6HD-01 12 21630844 21630844 T C RECQL Missense_Mutation p.T254A 0.36 deleterious(0) probably_damaging(0.989) TCGA-FC-A6HD-01 12 56548975 56548975 G C MYL6B Missense_Mutation p.K113N 0.04 deleterious(0.02) possibly_damaging(0.738) TCGA-FC-A6HD-01 13 77765887 77765887 C T MYCBP2 Missense_Mutation p.A1295T 0.09 probably_damaging(0.969) TCGA-FC-A6HD-01 14 52735165 52735165 C T PTGDR Silent p.V211V 0.40 TCGA-FC-A6HD-01 17 26110004 26110004 C T NOS2 Missense_Mutation p.R199H 0.06 deleterious(0) probably_damaging(0.974) TCGA-FC-A6HD-01 17 39912083 39912083 G A JUP Silent p.H717H 0.45 TCGA-FC-A6HD-01 17 60062197 60062197 T C MED13 Missense_Mutation p.T836A 0.30 deleterious(0) probably_damaging(0.993) TCGA-FC-A6HD-01 17 73518111 73518111 G T TSEN54 Missense_Mutation p.A317S 0.36 tolerated(0.48) possibly_damaging(0.613) TCGA-FC-A6HD-01 18 46447811 46447811 G A SMAD7 Silent p.G404G 0.20 TCGA-FC-A6HD-01 19 8188379 8188379 G A FBN3 Silent p.F1017F 0.21 TCGA-FC-A6HD-01 1 12979906 12979906 C T PRAMEF7 Silent p.S366S 0.31 TCGA-FC-A6HD-01 1 153066083 153066083 G T SPRR2E Missense_Mutation p.Q49K 0.23 tolerated_low_confidence(0.3) unknown(0) TCGA-FC-A6HD-01 1 197128614 197128637 TATTTGCAGGTTGAGGAGTAAGAG - ZBTB41 In_Frame_Del p.T861_N868del 0.23 TCGA-FC-A6HD-01 1 201047221 201047221 G A CACNA1S Missense_Mutation p.R469W 0.41 deleterious(0.02) possibly_damaging(0.893) TCGA-FC-A6HD-01 1 228558822 228558822 C A OBSCN Missense_Mutation p.H7738Q 0.33 probably_damaging(0.974) TCGA-FC-A6HD-01 1 241669308 241669308 A T FH Missense_Mutation p.L300H 0.43 tolerated(0.07) benign(0.042) TCGA-FC-A6HD-01 1 78959037 78959037 A C PTGFR Silent p.L203L 0.36 TCGA-FC-A6HD-01 20 13763443 13763443 T C ESF1 Missense_Mutation p.K115R 0.41 tolerated_low_confidence(0.11) benign(0.007) TCGA-FC-A6HD-01 20 61143780 61143780 C T C20orf166 5'Flank 0.08 TCGA-FC-A6HD-01 2 63283375 63283375 C G OTX1 Missense_Mutation p.A330G 0.32 deleterious(0.01) unknown(0) TCGA-FC-A6HD-01 3 11402103 11402103 C G ATG7 Missense_Mutation p.H510D 0.47 deleterious(0) probably_damaging(1) TCGA-FC-A6HD-01 3 12783981 12783981 A G TMEM40 Silent p.V109V 0.38 TCGA-FC-A6HD-01 3 196460770 196460770 A G PIGX Silent p.L276L 0.33 TCGA-FC-A6HD-01 4 120982029 120982029 A G MAD2L1 Missense_Mutation p.C149R 0.41 deleterious(0) possibly_damaging(0.617) TCGA-FC-A6HD-01 4 37591965 37591965 C T C4orf19 Silent p.C96C 0.42 TCGA-FC-A6HD-01 5 132425287 132425291 TCCTT - HSPA4 Frame_Shift_Del p.P427Lfs*2 0.28 TCGA-FC-A6HD-01 5 140563061 140563061 C T PCDHB16 Silent p.F309F 0.21 TCGA-FC-A6HD-01 5 172517939 172517939 A T CREBRF Missense_Mutation p.S253C 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.874) TCGA-FC-A6HD-01 5 38493716 38493716 A C LIFR Missense_Mutation p.I686R 0.39 deleterious(0) possibly_damaging(0.897) TCGA-FC-A6HD-01 6 100368810 100368810 A G MCHR2 3'UTR 0.06 TCGA-FC-A6HD-01 6 33385083 33385083 C T CUTA Missense_Mutation p.V107M 0.40 deleterious(0.02) benign(0.206) TCGA-FC-A6HD-01 7 143806868 143806868 C T OR2A2 Silent p.L65L 0.03 TCGA-FC-A6HD-01 7 23300355 23300355 A G GPNMB Silent p.P327P 0.29 TCGA-FC-A6HD-01 7 76029672 76029672 C T SRCRB4D Missense_Mutation p.E136K 0.09 deleterious(0.04) possibly_damaging(0.713) TCGA-FC-A6HD-01 8 22464425 22464425 T C CCAR2 Missense_Mutation p.V82A 0.47 tolerated(0.37) possibly_damaging(0.78) TCGA-FC-A6HD-01 8 88886040 88886040 T C DCAF4L2 Missense_Mutation p.M54V 0.34 deleterious(0) probably_damaging(0.94) TCGA-FC-A6HD-01 9 130167187 130167187 C T SLC2A8 Missense_Mutation p.S356L 0.39 tolerated(0.41) benign(0.001) TCGA-FC-A6HD-01 X 30237568 30237568 T - MAGEB2 Frame_Shift_Del p.L292Wfs*4 0.10 TCGA-FC-A8O0-01 10 7780626 7780626 C T ITIH2 Missense_Mutation p.P667L 0.42 tolerated(0.09) probably_damaging(0.942) TCGA-FC-A8O0-01 11 63176239 63176239 C T SLC22A9 Silent p.L497L 0.34 TCGA-FC-A8O0-01 12 3923277 3923277 T A PARP11 Missense_Mutation p.E209V 0.12 tolerated(0.09) benign(0.234) TCGA-FC-A8O0-01 12 45417627 45417627 G A DBX2 Missense_Mutation p.R184W 0.09 deleterious(0) probably_damaging(0.975) TCGA-FC-A8O0-01 17 41167999 41167999 A G VAT1 3'UTR 0.39 TCGA-FC-A8O0-01 18 46783426 46783426 C T DYM Missense_Mutation p.A472T 0.43 deleterious(0.02) possibly_damaging(0.673) TCGA-FC-A8O0-01 2 86292623 86292623 A C POLR1A Intron 0.50 TCGA-FC-A8O0-01 2 98844684 98844684 T C VWA3B Missense_Mutation p.L680S 0.37 deleterious(0) probably_damaging(0.999) TCGA-FC-A8O0-01 4 175898876 175898876 C A ADAM29 Missense_Mutation p.P734T 0.46 tolerated(0.12) benign(0.054) TCGA-FC-A8O0-01 5 118970330 118970330 C A FAM170A Missense_Mutation p.A296E 0.14 tolerated_low_confidence(0.97) benign(0) TCGA-FC-A8O0-01 5 122682431 122682431 G C CEP120 Missense_Mutation p.Q915E 0.40 tolerated(1) benign(0.001) TCGA-FC-A8O0-01 5 179043911 179043911 C T HNRNPH1 Missense_Mutation p.G389D 0.18 tolerated_low_confidence(0.1) benign(0.156) TCGA-FC-A8O0-01 6 31668722 31668722 G A ABHD16A Nonsense_Mutation p.R114* 0.38 TCGA-FC-A8O0-01 6 39869131 39869131 C T DAAM2 Silent p.D955D 0.03 TCGA-FC-A8O0-01 6 46129452 46129452 G A ENPP5 Missense_Mutation p.H349Y 0.32 deleterious(0) possibly_damaging(0.664) TCGA-FC-A8O0-01 8 116632180 116632180 C A TRPS1 Nonsense_Mutation p.E49* 0.23 TCGA-FC-A8O0-01 8 6360776 6360776 C T ANGPT2 Nonsense_Mutation p.W446* 0.09 TCGA-FC-A8O0-01 X 66905872 66905872 G A AR Missense_Mutation p.A597T 0.77 deleterious(0) probably_damaging(0.991) TCGA-G9-6329-01 10 102048747 102048747 G A PKD2L1 Nonsense_Mutation p.Q773* 0.15 TCGA-G9-6329-01 11 55406192 55406192 G A OR4P4 Missense_Mutation p.R120H 0.27 deleterious(0.05) benign(0.165) TCGA-G9-6329-01 11 60666069 60666069 C A PRPF19 Nonsense_Mutation p.G362* 0.11 TCGA-G9-6329-01 16 21109952 21109952 C T DNAH3 Silent p.A835A 0.05 TCGA-G9-6329-01 16 23716455 23716455 C T ERN2 Silent p.L249L 0.09 TCGA-G9-6329-01 16 29825561 29825561 C T PRRT2 Intron 0.07 TCGA-G9-6329-01 17 38906800 38906800 G A KRT25 Missense_Mutation p.A336V 0.14 tolerated(0.38) benign(0.013) TCGA-G9-6329-01 17 66425017 66425017 A C WIPI1 Missense_Mutation p.N342K 0.06 deleterious(0) possibly_damaging(0.488) TCGA-G9-6329-01 17 77809099 77809099 C T CBX4 Silent p.K114K 0.11 TCGA-G9-6329-01 19 11725339 11725339 C T ZNF627 Intron 0.11 TCGA-G9-6329-01 19 17411726 17411726 T C ABHD8 Missense_Mutation p.M234V 0.08 tolerated(0.48) benign(0.004) TCGA-G9-6329-01 19 23837046 23837046 C T ZNF675 Missense_Mutation p.C230Y 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-G9-6329-01 1 109803688 109803688 G T CELSR2 Missense_Mutation p.R1328L 0.06 deleterious(0.01) benign(0.347) TCGA-G9-6329-01 1 231069565 231069565 C A TTC13 Missense_Mutation p.D315Y 0.08 deleterious(0.01) possibly_damaging(0.885) TCGA-G9-6329-01 20 13763318 13763318 C T ESF1 Missense_Mutation p.D157N 0.13 tolerated_low_confidence(0.61) benign(0.002) TCGA-G9-6329-01 20 62320908 62320908 G T RTEL1 Silent p.T668T 0.06 TCGA-G9-6329-01 22 45574602 45574602 A G NUP50 Missense_Mutation p.K275R 0.12 deleterious(0.05) benign(0.167) TCGA-G9-6329-01 2 135870798 135870798 T G RAB3GAP1 Missense_Mutation p.L147R 0.12 deleterious(0) probably_damaging(0.924) TCGA-G9-6329-01 2 137814555 137814555 G T THSD7B Silent p.G235G 0.11 TCGA-G9-6329-01 2 203839140 203839140 T C CARF Missense_Mutation p.I472T 0.11 deleterious(0) possibly_damaging(0.661) TCGA-G9-6329-01 2 216177305 216177305 G A ATIC Missense_Mutation p.G35E 0.18 deleterious(0) probably_damaging(1) TCGA-G9-6329-01 3 101384241 101384241 G C ZBTB11 Nonsense_Mutation p.S397* 0.11 TCGA-G9-6329-01 4 148407185 148407185 C T EDNRA Silent p.L118L 0.15 TCGA-G9-6329-01 4 177058761 177058761 A G WDR17 Missense_Mutation p.E477G 0.09 deleterious(0) possibly_damaging(0.7) TCGA-G9-6329-01 5 14504503 14504503 G A TRIO Missense_Mutation p.G2805S 0.06 unknown(0) TCGA-G9-6329-01 5 151784352 151784352 C T NMUR2 Missense_Mutation p.R108H 0.11 tolerated(0.6) benign(0.003) TCGA-G9-6329-01 5 176830536 176830536 G A F12 Missense_Mutation p.R445C 0.15 deleterious(0) probably_damaging(0.969) TCGA-G9-6329-01 6 75892975 75892975 G A COL12A1 Missense_Mutation p.A561V 0.12 probably_damaging(0.998) TCGA-G9-6329-01 6 90426386 90426386 G A MDN1 Silent p.D2242D 0.14 TCGA-G9-6329-01 7 31617858 31617858 A G CCDC129 Missense_Mutation p.Y353C 0.11 tolerated(0.2) benign(0.004) TCGA-G9-6329-01 8 22472959 22472959 G A CCAR2 Silent p.Q409Q 0.18 TCGA-G9-6329-01 8 61736614 61736614 G C CHD7 Intron 0.07 TCGA-G9-6329-01 9 137657572 137657572 G A COL5A1 Missense_Mutation p.G694R 0.15 probably_damaging(0.997) TCGA-G9-6332-01 10 100177455 100177455 G A HPS1 Missense_Mutation p.R657C 0.42 deleterious(0.01) possibly_damaging(0.828) TCGA-G9-6332-01 10 119013862 119013862 A C SLC18A2 Intron 0.11 TCGA-G9-6332-01 10 13375855 13375855 T C SEPHS1 Silent p.G174G 0.37 TCGA-G9-6332-01 10 95718641 95718641 C T PIPSL RNA 0.14 TCGA-G9-6332-01 11 123900753 123900753 C T OR10G8 Missense_Mutation p.L142F 0.04 tolerated(0.47) benign(0.068) TCGA-G9-6332-01 11 17409274 17409274 A C KCNJ11 Missense_Mutation p.L122R 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-G9-6332-01 11 17409276 17409276 G A KCNJ11 Silent p.F121F 0.16 TCGA-G9-6332-01 11 27379087 27379087 T C CCDC34 Missense_Mutation p.T121A 0.17 tolerated(0.36) benign(0.023) TCGA-G9-6332-01 11 48347071 48347071 C A OR4C3 Missense_Mutation p.F193L 0.24 deleterious(0) probably_damaging(0.997) TCGA-G9-6332-01 11 58978336 58978336 A C MPEG1 Missense_Mutation p.L668R 0.29 deleterious(0) probably_damaging(0.955) TCGA-G9-6332-01 11 59282589 59282589 T G OR4D9 Missense_Mutation p.I68M 0.39 deleterious(0.01) benign(0.181) TCGA-G9-6332-01 11 65269936 65269936 A T MALAT1 RNA 0.27 TCGA-G9-6332-01 11 67052768 67052768 G A ADRBK1 Silent p.E639E 0.40 TCGA-G9-6332-01 11 747468 747468 C T TALDO1 5'UTR 0.44 TCGA-G9-6332-01 12 113544983 113544983 G T RASAL1 Missense_Mutation p.P527T 0.34 deleterious(0.03) possibly_damaging(0.89) TCGA-G9-6332-01 15 73615456 73615456 G T HCN4 Missense_Mutation p.T993K 0.33 tolerated_low_confidence(0.99) unknown(0) TCGA-G9-6332-01 15 86838596 86838596 G A AGBL1 Silent p.T731T 0.36 TCGA-G9-6332-01 16 66436911 66436911 G A CDH5 Missense_Mutation p.G732S 0.34 deleterious(0.01) probably_damaging(0.974) TCGA-G9-6332-01 17 34233423 34233423 G A AC015849.16 RNA 0.53 TCGA-G9-6332-01 17 8221715 8221715 G A ARHGEF15 Missense_Mutation p.R572H 0.35 tolerated(0.23) benign(0.005) TCGA-G9-6332-01 19 11552168 11552168 A G PRKCSH Missense_Mutation p.K155R 0.32 tolerated(0.12) benign(0.206) TCGA-G9-6332-01 19 48533840 48533840 C T CABP5 Splice_Site p.X166_splice 0.34 TCGA-G9-6332-01 1 111737241 111737241 G A DENND2D Silent p.A251A 0.19 TCGA-G9-6332-01 20 10273562 10273562 C G SNAP25 Intron 0.11 TCGA-G9-6332-01 2 179412752 179412752 A G TTN Missense_Mutation p.F31201L 0.38 TCGA-G9-6332-01 5 128983512 128983512 G A ADAMTS19 Missense_Mutation p.G637R 0.67 deleterious(0) probably_damaging(0.998) TCGA-G9-6332-01 6 1611154 1611154 C T FOXC1 Silent p.S158S 0.17 TCGA-G9-6332-01 6 3077128 3077128 A G RIPK1 Missense_Mutation p.D24G 0.14 deleterious(0.01) benign(0.327) TCGA-G9-6332-01 6 31752254 31752254 C T VARS Missense_Mutation p.R498H 0.33 deleterious(0.02) probably_damaging(0.994) TCGA-G9-6332-01 6 32093899 32093899 G T ATF6B Missense_Mutation p.S158Y 0.35 deleterious(0.02) benign(0.141) TCGA-G9-6332-01 7 73498339 73498339 T G LIMK1 Missense_Mutation p.C7G 0.36 deleterious_low_confidence(0.05) benign(0.01) TCGA-G9-6332-01 8 113529332 113529332 C T CSMD3 Missense_Mutation p.E1563K 0.31 tolerated(0.25) benign(0.019) TCGA-G9-6333-01 10 67680276 67680276 G A CTNNA3 Nonsense_Mutation p.R834* 0.19 TCGA-G9-6333-01 10 89505689 89505689 G A PAPSS2 Missense_Mutation p.V608I 0.07 tolerated(0.47) benign(0.029) TCGA-G9-6333-01 15 23890498 23890498 G A MAGEL2 Missense_Mutation p.P195S 0.08 tolerated(0.11) possibly_damaging(0.881) TCGA-G9-6333-01 15 52901525 52901525 T G FAM214A Missense_Mutation p.N529T 0.26 tolerated(0.31) benign(0.009) TCGA-G9-6333-01 16 242931 242931 G C LUC7L Missense_Mutation p.S257R 0.07 tolerated(0.26) unknown(0) TCGA-G9-6333-01 17 47696424 47696424 G T SPOP Missense_Mutation p.F133L 0.18 tolerated(0.07) probably_damaging(0.992) TCGA-G9-6333-01 17 5085657 5085657 G A ZNF594 Missense_Mutation p.S632F 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-G9-6333-01 17 76803039 76803039 A C USP36 Splice_Site p.X695_splice 0.08 TCGA-G9-6333-01 17 8409745 8409745 C T MYH10 Missense_Mutation p.G1093R 0.26 possibly_damaging(0.793) TCGA-G9-6333-01 18 23612376 23612376 T G SS18 Missense_Mutation p.Y406S 0.03 deleterious_low_confidence(0) unknown(0) TCGA-G9-6333-01 19 2421893 2421893 C T TMPRSS9 Silent p.G698G 0.08 TCGA-G9-6333-01 19 49164883 49164883 T C NTN5 3'UTR 0.12 TCGA-G9-6333-01 1 10342413 10342413 A G KIF1B Intron 0.27 TCGA-G9-6333-01 1 114254647 114254647 C T PHTF1 Missense_Mutation p.R291H 0.26 tolerated(0.11) benign(0.005) TCGA-G9-6333-01 1 150602012 150602012 G A ENSA 5'UTR 0.29 TCGA-G9-6333-01 1 165370515 165370515 C T RXRG Silent p.P459P 0.19 TCGA-G9-6333-01 1 200972744 200972744 C T KIF21B Silent p.R394R 0.20 TCGA-G9-6333-01 1 228433202 228433202 G C OBSCN Silent p.V1282V 0.13 TCGA-G9-6333-01 1 232002377 232002377 A G DISC1 3'UTR 0.07 TCGA-G9-6333-01 1 237711848 237711848 G A RYR2 Silent p.A1008A 0.19 TCGA-G9-6333-01 21 47423618 47423618 C T COL6A1 Silent p.F926F 0.18 TCGA-G9-6333-01 22 51178322 51178322 G A ACR Missense_Mutation p.G161D 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-G9-6333-01 2 177017450 177017450 G A HOXD4 Missense_Mutation p.R183H 0.08 deleterious(0) probably_damaging(0.998) TCGA-G9-6333-01 2 233925310 233925310 C T INPP5D Missense_Mutation p.A41V 0.18 deleterious(0) probably_damaging(1) TCGA-G9-6333-01 3 154861330 154861330 A G MME Silent p.E429E 0.18 TCGA-G9-6333-01 5 110710553 110710554 - A CAMK4 Frame_Shift_Ins p.I85Nfs*5 0.22 TCGA-G9-6333-01 5 14363859 14363859 T G TRIO Missense_Mutation p.S804A 0.06 benign(0.206) TCGA-G9-6333-01 5 33892070 33892070 C T ADAMTS12 5'UTR 0.41 TCGA-G9-6333-01 5 66458987 66458987 C T MAST4 Missense_Mutation p.S1327F 0.05 probably_damaging(0.999) TCGA-G9-6333-01 6 13228134 13228134 G A PHACTR1 Missense_Mutation p.G358D 0.10 deleterious(0.03) possibly_damaging(0.51) TCGA-G9-6333-01 7 141351367 141351367 G A AGK Silent p.T363T 0.05 TCGA-G9-6333-01 7 158534551 158534551 G C ESYT2 Missense_Mutation p.H638D 0.21 tolerated(0.62) benign(0.062) TCGA-G9-6333-01 7 20824912 20824912 T C SP8 Missense_Mutation p.H175R 0.36 tolerated(0.47) benign(0.352) TCGA-G9-6333-01 7 97823753 97823753 G T LMTK2 Missense_Mutation p.D1326Y 0.23 deleterious(0) probably_damaging(0.986) TCGA-G9-6333-01 8 139180230 139180230 G A FAM135B Missense_Mutation p.P389L 0.19 deleterious(0) probably_damaging(1) TCGA-G9-6333-01 8 139890294 139890294 G A COL22A1 Silent p.D119D 0.19 TCGA-G9-6333-01 8 68178397 68178397 G C ARFGEF1 Missense_Mutation p.P656R 0.18 tolerated(0.4) benign(0.004) TCGA-G9-6333-01 9 17273768 17273768 T C CNTLN Missense_Mutation p.V296A 0.14 deleterious(0.01) benign(0.068) TCGA-G9-6336-01 10 105798253 105798253 G A COL17A1 Missense_Mutation p.P994L 0.11 probably_damaging(0.992) TCGA-G9-6336-01 10 48371605 48371606 - G ZNF488 3'UTR 0.15 TCGA-G9-6336-01 10 94390060 94390060 A G KIF11 Missense_Mutation p.E478G 0.12 deleterious(0.02) possibly_damaging(0.778) TCGA-G9-6336-01 12 15261984 15261984 G T RERG 3'UTR 0.09 TCGA-G9-6336-01 12 46243943 46243943 A T ARID2 Missense_Mutation p.Q679H 0.12 tolerated_low_confidence(0.08) possibly_damaging(0.556) TCGA-G9-6336-01 13 49076874 49076874 C A RCBTB2 Missense_Mutation p.R368L 0.12 deleterious(0.01) benign(0.441) TCGA-G9-6336-01 15 79291122 79291122 C A RASGRF1 Missense_Mutation p.R947L 0.15 tolerated(0.1) benign(0.052) TCGA-G9-6336-01 16 74336163 74336163 G A PSMD7 Silent p.A137A 0.08 TCGA-G9-6336-01 17 48270010 48270010 G A COL1A1 Silent p.P640P 0.10 TCGA-G9-6336-01 1 152192307 152192307 G T HRNR Missense_Mutation p.H600N 0.10 unknown(0) TCGA-G9-6336-01 1 152733157 152733157 G A KPRP Missense_Mutation p.A365T 0.11 tolerated(0.48) benign(0.002) TCGA-G9-6336-01 1 176668379 176668379 G A PAPPA2 Missense_Mutation p.D964N 0.12 deleterious(0.05) probably_damaging(0.923) TCGA-G9-6336-01 20 35399437 35399437 C T DSN1 Missense_Mutation p.C65Y 0.05 tolerated_low_confidence(0.41) benign(0.004) TCGA-G9-6336-01 22 24581177 24581177 G C SUSD2 Missense_Mutation p.E300Q 0.18 deleterious(0) probably_damaging(0.99) TCGA-G9-6336-01 5 83360583 83360583 G A EDIL3 Silent p.L296L 0.16 TCGA-G9-6336-01 7 131172448 131172448 T G MKLN1 Silent p.T723T 0.17 TCGA-G9-6336-01 7 131172449 131172449 C A MKLN1 Missense_Mutation p.P724T 0.17 tolerated(0.09) benign(0.085) TCGA-G9-6336-01 8 52320734 52320734 G T PXDNL Silent p.I1150I 0.10 TCGA-G9-6336-01 9 118950296 118950296 G A PAPPA Missense_Mutation p.E427K 0.06 deleterious(0) possibly_damaging(0.635) TCGA-G9-6336-01 9 127316735 127316735 C T NR6A1 Missense_Mutation p.R86Q 0.09 deleterious(0) probably_damaging(0.98) TCGA-G9-6336-01 9 85597623 85597623 G A RASEF Missense_Mutation p.S731L 0.11 tolerated(0.12) benign(0.011) TCGA-G9-6336-01 X 109764689 109764689 G A TDGF1P3 RNA 0.32 TCGA-G9-6338-01 10 17365107 17365107 T C ST8SIA6 Missense_Mutation p.K229E 0.31 deleterious(0) probably_damaging(0.997) TCGA-G9-6338-01 10 37508447 37508447 T G ANKRD30A Nonsense_Mutation p.Y1213* 0.07 TCGA-G9-6338-01 10 71877572 71877572 C A AIFM2 Silent p.L204L 0.10 TCGA-G9-6338-01 10 7822139 7822139 T G KIN Missense_Mutation p.T86P 0.28 deleterious(0.03) probably_damaging(0.963) TCGA-G9-6338-01 11 47350634 47350634 C T MADD Missense_Mutation p.S1626L 0.39 deleterious(0) probably_damaging(0.997) TCGA-G9-6338-01 11 57971223 57971223 T C OR1S2 Missense_Mutation p.N144S 0.12 deleterious(0.01) benign(0.045) TCGA-G9-6338-01 11 61641315 61641315 T C FADS3 Missense_Mutation p.I437V 0.09 tolerated(0.08) benign(0) TCGA-G9-6338-01 12 121758199 121758199 G A ANAPC5 Nonsense_Mutation p.Q502* 0.09 TCGA-G9-6338-01 12 70723332 70723332 C T CNOT2 Missense_Mutation p.T123M 0.33 tolerated_low_confidence(0.15) possibly_damaging(0.451) TCGA-G9-6338-01 12 966384 966384 G A WNK1 Missense_Mutation p.E457K 0.45 deleterious(0.01) unknown(0) TCGA-G9-6338-01 15 43748753 43748753 T A TP53BP1 Nonsense_Mutation p.K685* 0.07 TCGA-G9-6338-01 16 1961822 1961822 G A HS3ST6 Silent p.F235F 0.08 TCGA-G9-6338-01 16 68732283 68732283 G A CDH3 Missense_Mutation p.G824S 0.42 deleterious(0) probably_damaging(1) TCGA-G9-6338-01 17 28511696 28511696 A G NSRP1 Missense_Mutation p.I227M 0.05 tolerated(0.12) benign(0.017) TCGA-G9-6338-01 17 46805442 46805442 A C HOXB13 Missense_Mutation p.W172G 0.42 deleterious(0) probably_damaging(0.995) TCGA-G9-6338-01 17 47696637 47696637 A G SPOP Missense_Mutation p.F104S 0.36 deleterious(0) probably_damaging(1) TCGA-G9-6338-01 17 56083248 56083249 - A SRSF1 Frame_Shift_Ins p.G156Wfs*22 0.26 TCGA-G9-6338-01 17 73838576 73838576 C G UNC13D Missense_Mutation p.E169D 0.14 tolerated(0.19) benign(0.099) TCGA-G9-6338-01 19 8140171 8140171 A C FBN3 Missense_Mutation p.C2526W 0.36 deleterious(0) probably_damaging(0.999) TCGA-G9-6338-01 1 152636615 152636615 C - LCE2D Frame_Shift_Del p.P13Lfs*61 0.12 TCGA-G9-6338-01 20 61907896 61907896 G T ARFGAP1 Missense_Mutation p.G79W 0.14 deleterious(0) probably_damaging(1) TCGA-G9-6338-01 2 219505430 219505430 G C ZNF142 Missense_Mutation p.C1517W 0.34 deleterious(0) possibly_damaging(0.892) TCGA-G9-6338-01 2 24261454 24261454 C G C2orf44 Missense_Mutation p.R304T 0.18 deleterious(0) possibly_damaging(0.869) TCGA-G9-6338-01 2 91843517 91843517 C T AC027612.6 RNA 0.24 TCGA-G9-6338-01 3 195959365 195959365 C T SLC51A Missense_Mutation p.P286S 0.07 deleterious(0.03) probably_damaging(0.984) TCGA-G9-6338-01 3 49314354 49314354 T C C3orf62 5'UTR 0.38 TCGA-G9-6338-01 3 62240850 62240850 T G PTPRG Missense_Mutation p.L840R 0.34 deleterious(0.01) possibly_damaging(0.572) TCGA-G9-6338-01 3 73016753 73016753 C T GXYLT2 Silent p.Y344Y 0.19 TCGA-G9-6338-01 4 146823855 146823855 T G ZNF827 Missense_Mutation p.S186R 0.07 deleterious(0) benign(0.091) TCGA-G9-6338-01 4 3176835 3176835 G C HTT Splice_Site p.X1469_splice 0.07 TCGA-G9-6338-01 6 110768172 110768172 C A SLC22A16 Missense_Mutation p.L185F 0.34 deleterious(0) probably_damaging(0.987) TCGA-G9-6338-01 6 132195457 132195457 A G ENPP1 Missense_Mutation p.N539D 0.35 deleterious(0) probably_damaging(0.995) TCGA-G9-6338-01 7 107880413 107880413 T C NRCAM Silent p.V32V 0.10 TCGA-G9-6338-01 7 158443616 158443616 G A NCAPG2 Nonsense_Mutation p.Q995* 0.11 TCGA-G9-6338-01 8 196474 196474 C T ZNF596 3'UTR 0.26 TCGA-G9-6338-01 9 35751280 35751280 T G RGP1 Missense_Mutation p.F169V 0.08 tolerated(0.37) benign(0.017) TCGA-G9-6339-01 10 21805058 21805058 T A SKIDA1 Missense_Mutation p.K565M 0.24 deleterious(0) unknown(0) TCGA-G9-6339-01 10 55591182 55591182 C A PCDH15 Missense_Mutation p.K1365N 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-G9-6339-01 11 34474685 34474685 A G CAT Missense_Mutation p.K177E 0.23 deleterious(0) possibly_damaging(0.601) TCGA-G9-6339-01 12 121766164 121766164 A G ANAPC5 Missense_Mutation p.I420T 0.22 tolerated(1) probably_damaging(0.912) TCGA-G9-6339-01 12 96641092 96641092 C T ELK3 Silent p.V194V 0.08 TCGA-G9-6339-01 14 102482730 102482730 C T DYNC1H1 Silent p.S2506S 0.06 TCGA-G9-6339-01 15 63852135 63852135 A G USP3 Missense_Mutation p.T205A 0.15 tolerated(0.51) benign(0.078) TCGA-G9-6339-01 16 2636776 2636776 G A PDPK1 Missense_Mutation p.G409S 0.23 tolerated(0.59) benign(0.008) TCGA-G9-6339-01 16 31372440 31372440 G A ITGAX Silent p.S306S 0.22 TCGA-G9-6339-01 16 52484190 52484190 C T TOX3 Missense_Mutation p.R226K 0.23 tolerated(0.54) benign(0.021) TCGA-G9-6339-01 17 18907360 18907360 C T FAM83G 5'UTR 0.16 TCGA-G9-6339-01 17 3593952 3593952 G A P2RX5 Missense_Mutation p.A128V 0.25 tolerated(0.43) benign(0.001) TCGA-G9-6339-01 18 31802972 31802972 G T NOL4 Nonsense_Mutation p.Y82* 0.18 TCGA-G9-6339-01 19 15234004 15234004 C A ILVBL Missense_Mutation p.V130L 0.19 tolerated(0.07) possibly_damaging(0.597) TCGA-G9-6339-01 19 17370705 17370705 C T USHBP1 Splice_Site p.X256_splice 0.17 TCGA-G9-6339-01 19 19790542 19790542 T C ZNF101 Silent p.T248T 0.16 TCGA-G9-6339-01 19 20828569 20828569 C A ZNF626 Missense_Mutation p.K49N 0.24 tolerated(0.1) benign(0.007) TCGA-G9-6339-01 19 40374061 40374061 T C FCGBP Missense_Mutation p.N4006S 0.22 possibly_damaging(0.621) TCGA-G9-6339-01 19 41289852 41289852 C T RAB4B Missense_Mutation p.A101V 0.27 deleterious(0.04) benign(0.045) TCGA-G9-6339-01 19 49206416 49206416 C T FUT2 Missense_Mutation p.A68V 0.15 tolerated(0.24) benign(0.12) TCGA-G9-6339-01 1 111494344 111494344 C T LRIF1 Missense_Mutation p.D388N 0.21 deleterious(0.03) possibly_damaging(0.908) TCGA-G9-6339-01 1 12836145 12836145 C G PRAMEF12 Missense_Mutation p.D249E 0.17 tolerated(1) benign(0.007) TCGA-G9-6339-01 1 154924328 154924328 G A PBXIP1 Missense_Mutation p.P41S 0.16 tolerated(0.51) benign(0.09) TCGA-G9-6339-01 1 229577702 229577702 G A NUP133 Silent p.F1140F 0.25 TCGA-G9-6339-01 1 27674032 27674032 G A SYTL1 Silent p.A104A 0.26 TCGA-G9-6339-01 1 43906957 43906957 A T SZT2 Missense_Mutation p.T2416S 0.23 tolerated(0.95) benign(0.012) TCGA-G9-6339-01 1 48764298 48764298 T A SPATA6 3'UTR 0.21 TCGA-G9-6339-01 1 90473286 90473286 A G ZNF326 Missense_Mutation p.T198A 0.11 tolerated(0.51) probably_damaging(0.931) TCGA-G9-6339-01 20 60448832 60448832 C T CDH4 Missense_Mutation p.T309M 0.26 deleterious(0.05) probably_damaging(0.914) TCGA-G9-6339-01 21 11026732 11026732 T C BAGE2 RNA 0.11 TCGA-G9-6339-01 2 108863658 108863658 A G SULT1C3 Missense_Mutation p.K3R 0.16 tolerated(0.27) benign(0.011) TCGA-G9-6339-01 2 109086210 109086210 G T GCC2 Missense_Mutation p.R142L 0.28 tolerated(0.09) benign(0) TCGA-G9-6339-01 2 139318404 139318404 T C SPOPL Silent p.P248P 0.07 TCGA-G9-6339-01 2 18745235 18745235 G A NT5C1B Missense_Mutation p.R554C 0.20 deleterious(0.01) probably_damaging(0.978) TCGA-G9-6339-01 2 197712615 197712615 T A PGAP1 Intron 0.24 TCGA-G9-6339-01 2 99725896 99725896 G A TSGA10 Nonsense_Mutation p.R3* 0.15 TCGA-G9-6339-01 3 127541184 127541184 A G MGLL 5'UTR 0.30 TCGA-G9-6339-01 5 151239422 151239422 C T GLRA1 Missense_Mutation p.A134T 0.27 deleterious(0.05) probably_damaging(0.963) TCGA-G9-6339-01 5 159476556 159476556 T C TTC1 Silent p.L193L 0.27 TCGA-G9-6339-01 5 167655091 167655091 G C TENM2 Missense_Mutation p.E1826Q 0.12 tolerated(0.05) probably_damaging(0.999) TCGA-G9-6339-01 5 40834355 40834355 G C RPL37 Missense_Mutation p.A51G 0.19 tolerated(0.17) benign(0.014) TCGA-G9-6339-01 5 45695922 45695922 C T HCN1 Missense_Mutation p.G92S 0.19 tolerated(0.5) probably_damaging(0.987) TCGA-G9-6339-01 6 43473228 43473228 G A TJAP1 Missense_Mutation p.D437N 0.24 deleterious(0.02) possibly_damaging(0.71) TCGA-G9-6339-01 6 70064192 70064192 C T BAI3 Missense_Mutation p.S1176L 0.22 deleterious(0) benign(0.041) TCGA-G9-6339-01 7 150761318 150761318 G A SLC4A2 Silent p.T27T 0.26 TCGA-G9-6339-01 7 38725370 38725370 G A FAM183B Missense_Mutation p.T79M 0.27 deleterious(0.03) benign(0.011) TCGA-G9-6339-01 8 135612780 135612780 T G ZFAT Missense_Mutation p.K792Q 0.22 deleterious(0) possibly_damaging(0.846) TCGA-G9-6339-01 8 54960567 54960567 G A LYPLA1 3'UTR 0.22 TCGA-G9-6339-01 9 116858369 116858369 A G KIF12 Missense_Mutation p.L148P 0.05 tolerated(0.2) probably_damaging(0.982) TCGA-G9-6339-01 9 131038453 131038453 G A SWI5 Nonsense_Mutation p.W10* 0.20 TCGA-G9-6339-01 9 140161398 140161398 G C NELFB Missense_Mutation p.E366D 0.17 tolerated(1) benign(0.004) TCGA-G9-6339-01 9 97843033 97843033 A G C9orf3 Missense_Mutation p.S764G 0.27 deleterious(0.01) benign(0.065) TCGA-G9-6339-01 X 104999297 104999297 G T IL1RAPL2 Missense_Mutation p.G440V 0.47 deleterious(0) probably_damaging(1) TCGA-G9-6342-01 11 65484372 65484372 A G KAT5 Missense_Mutation p.T395A 0.18 tolerated(0.46) benign(0.132) TCGA-G9-6342-01 12 51318927 51318927 T C METTL7A Missense_Mutation p.F36L 0.19 tolerated(0.09) benign(0.048) TCGA-G9-6342-01 12 70091546 70091546 A T BEST3 Missense_Mutation p.N11K 0.19 deleterious(0.02) benign(0.348) TCGA-G9-6342-01 13 41345293 41345293 C G MRPS31 5'UTR 0.17 TCGA-G9-6342-01 16 28115941 28115941 C T XPO6 Missense_Mutation p.V958M 0.10 deleterious(0) possibly_damaging(0.601) TCGA-G9-6342-01 17 7217275 7217275 G C GPS2 Missense_Mutation p.L144V 0.28 deleterious(0.02) possibly_damaging(0.801) TCGA-G9-6342-01 19 10404518 10404518 A C ICAM5 Missense_Mutation p.E537A 0.19 tolerated(0.12) benign(0.243) TCGA-G9-6342-01 19 5790299 5790299 C A DUS3L Missense_Mutation p.G49V 0.14 tolerated(0.09) benign(0.04) TCGA-G9-6342-01 1 176913135 176913135 C T ASTN1 Missense_Mutation p.G757S 0.24 tolerated(0.06) probably_damaging(0.994) TCGA-G9-6342-01 1 185931777 185931777 C T HMCN1 Silent p.I652I 0.17 TCGA-G9-6342-01 1 196254844 196254844 C T KCNT2 Silent p.L880L 0.23 TCGA-G9-6342-01 1 205132935 205132935 G A DSTYK Silent p.F491F 0.17 TCGA-G9-6342-01 2 160193505 160193505 C T BAZ2B Missense_Mutation p.C1915Y 0.09 possibly_damaging(0.827) TCGA-G9-6342-01 3 122459555 122459555 G A HSPBAP1 Silent p.G368G 0.08 TCGA-G9-6342-01 3 142680972 142680972 A C PAQR9 3'UTR 0.06 TCGA-G9-6342-01 3 196509570 196509570 T A PAK2 Missense_Mutation p.M18K 0.05 tolerated_low_confidence(0.2) benign(0.028) TCGA-G9-6342-01 4 10445720 10445720 A G ZNF518B Missense_Mutation p.Y745H 0.18 tolerated(0.41) possibly_damaging(0.467) TCGA-G9-6342-01 4 114275162 114275162 C T ANK2 Silent p.D1796D 0.14 TCGA-G9-6342-01 4 128626838 128626838 A G INTU Silent p.K553K 0.15 TCGA-G9-6342-01 4 69416515 69416515 G C UGT2B17 Missense_Mutation p.A398G 0.45 tolerated(0.6) benign(0.023) TCGA-G9-6342-01 5 39311238 39311238 C T C9 Splice_Site p.X371_splice 0.26 TCGA-G9-6342-01 6 70049277 70049277 A T BAI3 Missense_Mutation p.M1114L 0.19 deleterious(0.02) benign(0.003) TCGA-G9-6342-01 7 31862844 31862844 C T PDE1C Silent p.S535S 0.30 TCGA-G9-6342-01 8 68965472 68965472 C T PREX2 Missense_Mutation p.R362W 0.10 deleterious(0) probably_damaging(0.995) TCGA-G9-6342-01 X 135405107 135405107 G A GPR112 Missense_Mutation p.A81T 0.58 tolerated(1) benign(0.001) TCGA-G9-6342-01 X 153073955 153073955 G A PDZD4 Silent p.R52R 0.42 TCGA-G9-6343-01 10 35929635 35929635 C A FZD8 Silent p.V241V 0.11 TCGA-G9-6343-01 10 79781714 79781714 C T POLR3A Missense_Mutation p.A318T 0.10 deleterious(0) possibly_damaging(0.512) TCGA-G9-6343-01 11 128807545 128807545 C A TP53AIP1 Intron 0.13 TCGA-G9-6343-01 11 7670431 7670431 A G PPFIBP2 Missense_Mutation p.R655G 0.06 deleterious(0) probably_damaging(0.999) TCGA-G9-6343-01 12 39696874 39696874 G A KIF21A Missense_Mutation p.H1542Y 0.10 deleterious(0) probably_damaging(0.987) TCGA-G9-6343-01 12 55846662 55846662 C A OR6C2 Missense_Mutation p.T222K 0.08 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-G9-6343-01 12 70925905 70925905 G A PTPRB Silent p.I2138I 0.12 TCGA-G9-6343-01 15 28902390 28902390 G A HERC2P9 RNA 0.18 TCGA-G9-6343-01 16 67700164 67700164 T C ENKD1 Silent p.Q30Q 0.19 TCGA-G9-6343-01 17 10366430 10366430 G A MYH4 Missense_Mutation p.S294F 0.10 deleterious(0.01) probably_damaging(0.987) TCGA-G9-6343-01 17 39983679 39983679 T C NT5C3B Missense_Mutation p.K256R 0.06 tolerated(0.2) possibly_damaging(0.464) TCGA-G9-6343-01 19 22156520 22156520 T C ZNF208 Missense_Mutation p.N439S 0.09 tolerated(1) benign(0) TCGA-G9-6343-01 19 40739755 40739755 G A AKT2 3'UTR 0.09 TCGA-G9-6343-01 19 9087660 9087660 G A MUC16 Silent p.T1385T 0.11 TCGA-G9-6343-01 1 247615283 247615283 A T OR2B11 Translation_Start_Site p.M1? 0.15 deleterious(0) probably_damaging(0.921) TCGA-G9-6343-01 1 34684353 34684353 A C C1orf94 Silent p.I596I 0.10 TCGA-G9-6343-01 1 35226969 35226969 G A GJB4 Silent p.V38V 0.11 TCGA-G9-6343-01 22 37263492 37263492 C T NCF4 Silent p.N110N 0.09 TCGA-G9-6343-01 22 44127674 44127674 T C EFCAB6 Missense_Mutation p.N221S 0.09 tolerated(0.39) benign(0.028) TCGA-G9-6343-01 2 219892530 219892530 T C CCDC108 Missense_Mutation p.M685V 0.20 deleterious(0.04) benign(0.007) TCGA-G9-6343-01 2 50850692 50850692 T C NRXN1 Silent p.Q331Q 0.06 TCGA-G9-6343-01 2 89292205 89292205 C T IGKV1-8 Missense_Mutation p.R23Q 0.09 tolerated(1) benign(0) TCGA-G9-6343-01 3 178952050 178952050 T G PIK3CA Silent p.A1035A 0.09 TCGA-G9-6343-01 4 100273819 100273819 C T ADH1C Missense_Mutation p.G5E 0.12 probably_damaging(0.996) TCGA-G9-6343-01 4 159601637 159601637 C T ETFDH Missense_Mutation p.A18V 0.13 tolerated_low_confidence(0.24) benign(0.001) TCGA-G9-6343-01 4 44692859 44692859 A C GUF1 Missense_Mutation p.K487N 0.08 tolerated(0.49) possibly_damaging(0.87) TCGA-G9-6343-01 5 139940031 139940031 A C APBB3 Missense_Mutation p.F371C 0.09 deleterious(0) probably_damaging(1) TCGA-G9-6343-01 6 108985412 108985412 T C FOXO3 Missense_Mutation p.F459S 0.07 deleterious(0) probably_damaging(0.993) TCGA-G9-6343-01 6 150569956 150569956 A C PPP1R14C Nonstop_Mutation p.*166Cext*21 0.11 TCGA-G9-6343-01 7 21521732 21521732 A G SP4 Missense_Mutation p.T700A 0.08 deleterious(0) probably_damaging(0.99) TCGA-G9-6343-01 7 2748832 2748832 G A AMZ1 Missense_Mutation p.G242D 0.12 tolerated(0.22) probably_damaging(0.963) TCGA-G9-6343-01 7 99096409 99096409 G A ZNF394 Silent p.R171R 0.08 TCGA-G9-6343-01 8 130762274 130762274 G A GSDMC Missense_Mutation p.P392L 0.17 tolerated(0.32) benign(0.012) TCGA-G9-6343-01 8 55542773 55542773 G A RP1 Missense_Mutation p.V2111I 0.15 tolerated(0.11) benign(0.042) TCGA-G9-6343-01 9 32544153 32544154 AG - TOPORS Frame_Shift_Del p.F123Lfs*14 0.11 TCGA-G9-6343-01 X 149761072 149761072 C A MTM1 5'UTR 0.08 TCGA-G9-6347-01 10 75104854 75104854 A G TTC18 Missense_Mutation p.M193T 0.08 tolerated(0.12) benign(0.153) TCGA-G9-6347-01 11 56113902 56113902 G A OR8K1 Missense_Mutation p.V130I 0.05 deleterious_low_confidence(0) possibly_damaging(0.565) TCGA-G9-6347-01 11 8132160 8132160 T A RIC3 3'UTR 0.14 TCGA-G9-6347-01 11 8132161 8132161 G A RIC3 3'UTR 0.14 TCGA-G9-6347-01 12 68710032 68710032 A G MDM1 Missense_Mutation p.V336A 0.07 deleterious(0) probably_damaging(0.999) TCGA-G9-6347-01 14 30100144 30100144 G A PRKD1 Silent p.F492F 0.06 TCGA-G9-6347-01 16 2142146 2142146 C T PKD1 Silent p.S3771S 0.17 TCGA-G9-6347-01 1 150936826 150936826 G C SETDB1 Missense_Mutation p.G1288R 0.19 deleterious(0) possibly_damaging(0.892) TCGA-G9-6347-01 1 18807930 18807930 A G KLHDC7A Missense_Mutation p.N152S 0.05 deleterious(0.04) benign(0.015) TCGA-G9-6347-01 1 228466419 228466419 C T OBSCN Missense_Mutation p.R2726W 0.06 probably_damaging(1) TCGA-G9-6347-01 20 61288286 61288286 C T SLCO4A1 Silent p.V160V 0.11 TCGA-G9-6347-01 21 46078231 46078231 G A KRTAP12-3 3'UTR 0.09 TCGA-G9-6347-01 22 17690429 17690429 C A CECR1 Missense_Mutation p.G47W 0.08 deleterious(0.01) probably_damaging(1) TCGA-G9-6347-01 2 198265579 198265579 C T SF3B1 Missense_Mutation p.E860K 0.17 deleterious(0.02) benign(0.175) TCGA-G9-6347-01 3 112546303 112546303 G A CD200R1L Missense_Mutation p.P114L 0.06 deleterious(0) probably_damaging(0.935) TCGA-G9-6347-01 3 123383037 123383037 C T MYLK Silent p.A1300A 0.09 TCGA-G9-6347-01 3 38627374 38627374 G A SCN5A Silent p.Y865Y 0.07 TCGA-G9-6347-01 3 49377480 49377480 C T USP4 5'UTR 0.07 TCGA-G9-6347-01 5 140215658 140215658 G T PCDHA7 Missense_Mutation p.A564S 0.09 tolerated_low_confidence(0.09) benign(0.048) TCGA-G9-6347-01 6 143772131 143772131 G C PEX3 5'UTR 0.04 TCGA-G9-6347-01 6 155561701 155561701 A T TIAM2 Missense_Mutation p.N1069I 0.08 tolerated(0.06) benign(0.01) TCGA-G9-6347-01 6 42176031 42176031 G A MRPS10 Missense_Mutation p.S201L 0.03 deleterious_low_confidence(0) unknown(0) TCGA-G9-6347-01 6 42689590 42689590 G T PRPH2 Silent p.I161I 0.08 TCGA-G9-6347-01 7 127235472 127235472 C T FSCN3 Missense_Mutation p.R86C 0.10 tolerated(0.1) benign(0.017) TCGA-G9-6347-01 7 148979001 148979001 G A ZNF783 Missense_Mutation p.G403D 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-G9-6347-01 8 22548994 22548994 C G EGR3 Missense_Mutation p.E52D 0.04 tolerated(1) benign(0) TCGA-G9-6347-01 9 134366823 134366823 A T PRRC2B Silent p.P2079P 0.10 TCGA-G9-6348-01 10 26575384 26575384 C T GAD2 Silent p.H449H 0.12 TCGA-G9-6348-01 11 118900037 118900037 A C SLC37A4 Missense_Mutation p.S15A 0.14 tolerated(0.64) benign(0.001) TCGA-G9-6348-01 12 105571030 105571030 G A APPL2 Missense_Mutation p.P555S 0.12 deleterious(0) probably_damaging(0.925) TCGA-G9-6348-01 15 28386775 28386775 G A HERC2 Nonsense_Mutation p.R3940* 0.19 TCGA-G9-6348-01 15 63632619 63632619 G A CA12 Silent p.F205F 0.08 TCGA-G9-6348-01 16 54966502 54966502 A G IRX5 Silent p.P114P 0.17 TCGA-G9-6348-01 16 70010511 70010511 A G PDXDC2P RNA 0.13 TCGA-G9-6348-01 17 10355525 10355525 G A MYH4 Silent p.A1157A 0.20 TCGA-G9-6348-01 17 42333173 42333173 G A SLC4A1 Silent p.N556N 0.16 TCGA-G9-6348-01 17 46628435 46628435 G T HOXB3 Missense_Mutation p.A186E 0.12 tolerated(0.06) benign(0.006) TCGA-G9-6348-01 17 61949662 61949662 G C CSH2 Missense_Mutation p.R160G 0.17 deleterious(0.03) benign(0.08) TCGA-G9-6348-01 17 61949663 61949663 G A CSH2 Silent p.R159R 0.17 TCGA-G9-6348-01 17 7690227 7690227 A T DNAH2 Missense_Mutation p.D2160V 0.19 probably_damaging(0.916) TCGA-G9-6348-01 18 29099853 29099853 G A DSG2 Missense_Mutation p.A57T 0.19 tolerated(1) benign(0.017) TCGA-G9-6348-01 19 14829233 14829251 CCTATGCATGTAACAAATG - ZNF333 Frame_Shift_Del p.S365Lfs*43 0.11 TCGA-G9-6348-01 19 18391297 18391297 T C JUND Missense_Mutation p.N333S 0.36 tolerated(0.46) benign(0.035) TCGA-G9-6348-01 19 51630484 51630484 G C SIGLEC9 Missense_Mutation p.A316P 0.18 deleterious(0) benign(0.208) TCGA-G9-6348-01 19 54387493 54387493 C T PRKCG Missense_Mutation p.T94M 0.16 deleterious(0.03) benign(0.238) TCGA-G9-6348-01 19 57956721 57956721 A C ZNF749 Missense_Mutation p.K735N 0.16 tolerated(0.43) possibly_damaging(0.788) TCGA-G9-6348-01 1 103444413 103444413 T C COL11A1 Intron 0.19 TCGA-G9-6348-01 1 12058937 12058937 T A MFN2 Splice_Site p.X236_splice 0.10 TCGA-G9-6348-01 1 149885276 149885276 G A SV2A Silent p.D39D 0.16 TCGA-G9-6348-01 1 175086262 175086262 G A TNN Silent p.P769P 0.15 TCGA-G9-6348-01 1 196952162 196952162 G A CFHR5 Missense_Mutation p.R69H 0.14 tolerated(0.54) possibly_damaging(0.828) TCGA-G9-6348-01 1 37324731 37324731 C T GRIK3 Missense_Mutation p.R361H 0.17 deleterious(0.02) possibly_damaging(0.687) TCGA-G9-6348-01 1 74507397 74507397 C A LRRIQ3 Missense_Mutation p.E406D 0.15 tolerated(0.26) benign(0.014) TCGA-G9-6348-01 20 33764648 33764648 T C PROCR 3'UTR 0.20 TCGA-G9-6348-01 20 43945650 43945650 G A RBPJL 3'UTR 0.10 TCGA-G9-6348-01 20 57598857 57598857 G C TUBB1 Missense_Mutation p.E125D 0.14 deleterious_low_confidence(0.01) probably_damaging(0.922) TCGA-G9-6348-01 22 43267420 43267420 G A PACSIN2 Silent p.R468R 0.18 TCGA-G9-6348-01 2 155099377 155099377 A - GALNT13 Frame_Shift_Del p.G216Dfs*10 0.12 TCGA-G9-6348-01 2 167142945 167142945 C T SCN9A Silent p.S501S 0.03 TCGA-G9-6348-01 2 167262810 167262810 A T SCN7A Silent p.I1443I 0.18 TCGA-G9-6348-01 2 51255226 51255226 G A NRXN1 Silent p.S62S 0.27 TCGA-G9-6348-01 3 33602330 33602330 G C CLASP2 Missense_Mutation p.A975G 0.15 deleterious(0) probably_damaging(0.995) TCGA-G9-6348-01 3 89391103 89391103 C A EPHA3 Missense_Mutation p.T390N 0.05 deleterious(0.04) benign(0.056) TCGA-G9-6348-01 4 115750976 115750976 T A NDST4 Missense_Mutation p.K823N 0.15 deleterious(0) probably_damaging(0.915) TCGA-G9-6348-01 4 166935656 166935656 G A TLL1 Missense_Mutation p.R329Q 0.04 deleterious(0) probably_damaging(0.984) TCGA-G9-6348-01 4 175897858 175897858 C T ADAM29 Silent p.I394I 0.17 TCGA-G9-6348-01 4 39301877 39301889 CACCCTGCTGCTA - RFC1 Splice_Site p.X895_splice 0.09 TCGA-G9-6348-01 4 7728622 7728622 G A SORCS2 Missense_Mutation p.R954H 0.08 tolerated(0.2) benign(0.014) TCGA-G9-6348-01 5 146017843 146017843 G A PPP2R2B Missense_Mutation p.A257V 0.11 tolerated(0.21) benign(0.003) TCGA-G9-6348-01 6 130762197 130762197 C A TMEM200A Silent p.I210I 0.07 TCGA-G9-6348-01 6 132641814 132641814 A G MOXD1 Missense_Mutation p.I440T 0.18 deleterious(0.02) benign(0.369) TCGA-G9-6348-01 6 168297653 168297653 G T MLLT4 Splice_Site p.X439_splice 0.19 TCGA-G9-6348-01 7 151664546 151664546 G A GALNTL5 Missense_Mutation p.R72K 0.09 tolerated(0.99) benign(0) TCGA-G9-6348-01 7 151664547 151664547 G C GALNTL5 Missense_Mutation p.R72S 0.09 tolerated(0.49) benign(0.001) TCGA-G9-6348-01 8 25166414 25166414 G A DOCK5 Missense_Mutation p.A389T 0.07 tolerated(0.46) benign(0.003) TCGA-G9-6348-01 8 77690474 77690474 C T ZFHX4 Missense_Mutation p.P1042S 0.20 benign(0) TCGA-G9-6348-01 9 139701517 139701517 C A CCDC183 Silent p.I495I 0.06 TCGA-G9-6348-01 X 32536160 32536160 C T DMD Missense_Mutation p.E753K 0.40 possibly_damaging(0.451) TCGA-G9-6351-01 11 93796817 93796817 C A HEPHL1 Missense_Mutation p.H187N 0.14 deleterious(0) probably_damaging(1) TCGA-G9-6351-01 13 98829414 98829414 C A RNF113B Missense_Mutation p.G26V 0.09 tolerated(0.23) benign(0.033) TCGA-G9-6351-01 14 38061705 38061705 C G FOXA1 Missense_Mutation p.S95T 0.24 tolerated(0.6) benign(0.224) TCGA-G9-6351-01 17 16467045 16467045 G A ZNF287 Missense_Mutation p.T199M 0.26 tolerated(0.48) probably_damaging(0.998) TCGA-G9-6351-01 1 146765330 146765330 T C CHD1L Silent p.N810N 0.15 TCGA-G9-6351-01 1 152329418 152329418 A T FLG2 Missense_Mutation p.Y282N 0.18 unknown(0) TCGA-G9-6351-01 1 153122527 153122527 C T SPRR2G Silent p.T20T 0.09 TCGA-G9-6351-01 20 29628246 29628246 C A FRG1B Missense_Mutation p.A83D 0.05 tolerated(0.07) probably_damaging(0.997) TCGA-G9-6351-01 21 42839793 42839793 C T TMPRSS2 Silent p.L482L 0.09 TCGA-G9-6351-01 22 39910032 39910032 A T MIEF1 Missense_Mutation p.I366F 0.17 deleterious(0) benign(0.255) TCGA-G9-6351-01 2 79253898 79253898 G T REG3G Missense_Mutation p.A46S 0.18 tolerated(0.07) benign(0.102) TCGA-G9-6351-01 3 170715640 170715640 A G SLC2A2 3'UTR 0.18 TCGA-G9-6351-01 4 76924788 76924788 C T CXCL9 Missense_Mutation p.R114Q 0.07 deleterious(0.04) unknown(0) TCGA-G9-6351-01 5 107216868 107216868 A G FBXL17 Missense_Mutation p.I612T 0.18 deleterious(0) possibly_damaging(0.777) TCGA-G9-6351-01 5 140166008 140166008 G A PCDHA1 Missense_Mutation p.V45I 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G9-6351-01 5 140572969 140572969 T G PCDHB10 Missense_Mutation p.F282V 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.448) TCGA-G9-6351-01 5 31323130 31323130 C A CDH6 Silent p.A696A 0.14 TCGA-G9-6351-01 6 131939623 131939623 C A MED23 Missense_Mutation p.G235V 0.14 tolerated(0.15) probably_damaging(0.962) TCGA-G9-6351-01 6 70071267 70071267 G A BAI3 Missense_Mutation p.A1368T 0.16 tolerated(0.29) benign(0.01) TCGA-G9-6351-01 X 111698033 111698033 G A ZCCHC16 Missense_Mutation p.R26Q 0.23 tolerated(1) benign(0.001) TCGA-G9-6351-01 X 135572582 135572582 G A BRS3 Missense_Mutation p.R242K 0.40 tolerated(0.74) benign(0.009) TCGA-G9-6351-01 X 591826 591826 A T SHOX Missense_Mutation p.H65L 0.14 tolerated(0.24) benign(0.003) TCGA-G9-6351-01 X 71349790 71349790 C T RGAG4 Missense_Mutation p.R534H 0.23 tolerated_low_confidence(0.26) unknown(0) TCGA-G9-6353-01 16 67335718 67335718 C T KCTD19 Missense_Mutation p.V251I 0.05 tolerated(0.13) benign(0.003) TCGA-G9-6353-01 19 46216533 46216533 G A FBXO46 Missense_Mutation p.S74L 0.04 tolerated(0.09) probably_damaging(0.943) TCGA-G9-6353-01 1 41978662 41978662 G A HIVEP3 Missense_Mutation p.A2077V 0.06 benign(0.171) TCGA-G9-6353-01 22 37524348 37524348 G A IL2RB Silent p.L482L 0.07 TCGA-G9-6353-01 22 41616870 41616870 G T L3MBTL2 Missense_Mutation p.R284L 0.05 deleterious(0.04) benign(0.007) TCGA-G9-6353-01 5 140187629 140187629 C T PCDHA4 Missense_Mutation p.S286L 0.07 tolerated_low_confidence(0.54) benign(0.072) TCGA-G9-6354-01 10 102112212 102112212 C G SCD Missense_Mutation p.L134V 0.10 deleterious(0) possibly_damaging(0.9) TCGA-G9-6354-01 10 46238880 46238880 A G FAM21C Missense_Mutation p.K191E 0.11 deleterious(0.02) possibly_damaging(0.578) TCGA-G9-6354-01 10 50363896 50363896 C T C10orf128 3'UTR 0.16 TCGA-G9-6354-01 11 55433550 55433550 G T OR4C6 Missense_Mutation p.W303L 0.11 tolerated_low_confidence(0.65) benign(0) TCGA-G9-6354-01 11 58959580 58959580 A G DTX4 Missense_Mutation p.I411V 0.10 deleterious(0) possibly_damaging(0.863) TCGA-G9-6354-01 12 69103089 69103089 G A NUP107 Silent p.Q267Q 0.10 TCGA-G9-6354-01 13 77642776 77642776 T A MYCBP2 Missense_Mutation p.Y3994F 0.17 probably_damaging(0.968) TCGA-G9-6354-01 14 24702732 24702732 C A GMPR2 Nonsense_Mutation p.Y63* 0.21 TCGA-G9-6354-01 14 55509738 55509738 A C SOCS4 5'UTR 0.08 TCGA-G9-6354-01 15 76073188 76073188 C T RN7SL319P 5'Flank 0.06 TCGA-G9-6354-01 16 31508234 31508234 G A C16orf58 Missense_Mutation p.A213V 0.50 deleterious(0) probably_damaging(0.989) TCGA-G9-6354-01 16 3433725 3433725 A C ZSCAN32 Intron 0.25 TCGA-G9-6354-01 16 71512203 71512203 T C ZNF19 Missense_Mutation p.R68G 0.24 tolerated(0.54) benign(0) TCGA-G9-6354-01 17 7217479 7217479 C T GPS2 Splice_Site p.X106_splice 0.12 TCGA-G9-6354-01 19 19168567 19168567 T C ARMC6 3'UTR 0.08 TCGA-G9-6354-01 19 53762190 53762190 G A VN1R2 Missense_Mutation p.V188M 0.18 tolerated(0.06) possibly_damaging(0.87) TCGA-G9-6354-01 1 160654876 160654876 G A CD48 Silent p.F62F 0.09 TCGA-G9-6354-01 1 212798295 212798295 G T FAM71A Missense_Mutation p.G26W 0.14 deleterious(0) probably_damaging(1) TCGA-G9-6354-01 20 62126425 62126425 C T EEF1A2 Silent p.A118A 0.13 TCGA-G9-6354-01 2 138033555 138033555 C T THSD7B Missense_Mutation p.T820M 0.21 tolerated(0.37) possibly_damaging(0.897) TCGA-G9-6354-01 3 180359822 180359822 C T CCDC39 Silent p.A611A 0.08 TCGA-G9-6354-01 3 25502755 25502755 G A RARB Missense_Mutation p.V77M 0.09 deleterious(0) benign(0.112) TCGA-G9-6354-01 3 38592387 38592387 G A SCN5A Missense_Mutation p.R1826C 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-G9-6354-01 3 49136843 49136843 G A QARS Silent p.L516L 0.11 TCGA-G9-6354-01 4 26622268 26622268 T A TBC1D19 Silent p.P84P 0.10 TCGA-G9-6354-01 4 56768605 56768605 A G EXOC1 Silent p.K811K 0.06 TCGA-G9-6354-01 6 132891858 132891858 C T TAAR6 Missense_Mutation p.A133V 0.30 deleterious(0.02) possibly_damaging(0.573) TCGA-G9-6354-01 6 151055000 151055000 G A PLEKHG1 Silent p.P61P 0.18 TCGA-G9-6354-01 6 87725911 87725911 C T HTR1E Missense_Mutation p.R287W 0.08 deleterious(0) probably_damaging(0.999) TCGA-G9-6354-01 7 716868 716868 C G PRKAR1B Missense_Mutation p.R146S 0.11 deleterious(0.05) benign(0.151) TCGA-G9-6354-01 8 72973925 72973925 C T TRPA1 Silent p.S293S 0.13 TCGA-G9-6354-01 8 77766817 77766817 A T ZFHX4 Missense_Mutation p.S2554C 0.24 possibly_damaging(0.591) TCGA-G9-6354-01 9 74345121 74345121 C T TMEM2 Missense_Mutation p.E608K 0.09 deleterious(0.02) possibly_damaging(0.56) TCGA-G9-6354-01 X 1584460 1584460 G A P2RY8 Missense_Mutation p.T331M 0.08 tolerated(0.49) benign(0.002) TCGA-G9-6354-01 X 50376383 50376383 A G SHROOM4 Missense_Mutation p.V897A 0.56 tolerated(0.29) benign(0.004) TCGA-G9-6356-01 11 132081914 132081914 A C NTM Splice_Site p.X134_splice 0.10 TCGA-G9-6356-01 12 101488062 101488062 C T ANO4 Missense_Mutation p.T542M 0.08 deleterious(0) probably_damaging(0.988) TCGA-G9-6356-01 12 121746472 121746472 G T ANAPC5 Missense_Mutation p.N693K 0.07 tolerated(0.8) benign(0.298) TCGA-G9-6356-01 12 19511256 19511256 A G PLEKHA5 Missense_Mutation p.H1078R 0.10 deleterious(0.03) benign(0.018) TCGA-G9-6356-01 12 48533667 48533667 T C PFKM Missense_Mutation p.L459P 0.09 deleterious(0.02) probably_damaging(1) TCGA-G9-6356-01 12 59282122 59282122 C G LRIG3 Missense_Mutation p.K312N 0.09 tolerated(0.07) possibly_damaging(0.72) TCGA-G9-6356-01 12 6686950 6686950 C T CHD4 Splice_Site p.X1787_splice 0.04 TCGA-G9-6356-01 12 72036214 72036214 A C ZFC3H1 Splice_Site p.X543_splice 0.09 TCGA-G9-6356-01 14 76224211 76224211 C T TTLL5 Intron 0.05 TCGA-G9-6356-01 15 42446634 42446634 C T PLA2G4F Silent p.V69V 0.11 TCGA-G9-6356-01 16 85701839 85701840 - T GSE1 Frame_Shift_Ins p.P1076Sfs*34 0.14 TCGA-G9-6356-01 17 76459153 76459153 C T DNAH17 Missense_Mutation p.V2969I 0.10 benign(0.013) TCGA-G9-6356-01 19 54849889 54849889 C T LILRA4 Missense_Mutation p.V45M 0.06 tolerated(0.14) probably_damaging(0.93) TCGA-G9-6356-01 1 227842075 227842075 C T ZNF678 Nonsense_Mutation p.Q42* 0.08 TCGA-G9-6356-01 1 43783609 43783609 C T TIE1 Missense_Mutation p.R930W 0.09 deleterious(0) probably_damaging(1) TCGA-G9-6356-01 21 34903824 34903824 C A GART Nonsense_Mutation p.E190* 0.08 TCGA-G9-6356-01 2 106710354 106710354 C G UXS1 3'UTR 0.17 TCGA-G9-6356-01 2 11943067 11943067 C T LPIN1 Missense_Mutation p.R690C 0.10 tolerated(0.05) benign(0.135) TCGA-G9-6356-01 2 178483090 178483090 G A TTC30A Missense_Mutation p.R114W 0.11 deleterious(0) possibly_damaging(0.453) TCGA-G9-6356-01 2 70130361 70130361 C T SNRNP27 Nonsense_Mutation p.Q133* 0.08 TCGA-G9-6356-01 4 159567948 159567948 G A RXFP1 Missense_Mutation p.D451N 0.09 deleterious(0) probably_damaging(0.998) TCGA-G9-6356-01 5 648008 648008 G A CEP72 Silent p.T585T 0.11 TCGA-G9-6356-01 5 79952234 79952234 C A MSH3 Missense_Mutation p.T81K 0.07 deleterious_low_confidence(0.02) benign(0.021) TCGA-G9-6356-01 6 118790443 118790443 T G CEP85L Silent p.T685T 0.08 TCGA-G9-6356-01 6 29694720 29694720 G A HLA-F Missense_Mutation p.G366E 0.07 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-G9-6356-01 7 94293246 94293246 C T PEG10 Silent p.T126T 0.06 TCGA-G9-6356-01 8 133053386 133053386 C T OC90 Missense_Mutation p.R121H 0.05 tolerated(0.06) probably_damaging(1) TCGA-G9-6356-01 8 24199261 24199261 C T ADAM28 Silent p.G607G 0.05 TCGA-G9-6356-01 9 139091593 139091593 C A LHX3 Missense_Mutation p.D134Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-G9-6361-01 11 120008221 120008221 G A TRIM29 Silent p.C173C 0.15 TCGA-G9-6361-01 11 533476 533476 C T HRAS Missense_Mutation p.E143K 0.15 deleterious(0.02) possibly_damaging(0.706) TCGA-G9-6361-01 11 66812168 66812168 C T SYT12 Silent p.N314N 0.27 TCGA-G9-6361-01 11 803450 803450 G A PIDD Silent p.L145L 0.05 TCGA-G9-6361-01 12 52200655 52200655 C T SCN8A Silent p.F1795F 0.44 TCGA-G9-6361-01 12 53878999 53878999 C G MAP3K12 Splice_Site p.X327_splice 0.31 TCGA-G9-6361-01 12 57626237 57626237 C T SHMT2 Missense_Mutation p.P199L 0.28 tolerated(0.15) possibly_damaging(0.55) TCGA-G9-6361-01 13 100518573 100518573 C A CLYBL Silent p.L238L 0.32 TCGA-G9-6361-01 15 74219535 74219535 G C LOXL1 Silent p.T137T 0.05 TCGA-G9-6361-01 15 78217290 78217290 G A RP11-114H24.7 3'Flank 0.05 TCGA-G9-6361-01 17 46048774 46048774 G T CDK5RAP3 Splice_Site p.X18_splice 0.30 TCGA-G9-6361-01 17 72937760 72937760 G A OTOP3 Missense_Mutation p.V116I 0.12 tolerated(1) benign(0.016) TCGA-G9-6361-01 19 10812880 10812880 A G QTRT1 Missense_Mutation p.N134S 0.31 tolerated(1) benign(0) TCGA-G9-6361-01 19 38643547 38643547 G A SIPA1L3 Missense_Mutation p.G1201S 0.05 tolerated(0.13) possibly_damaging(0.877) TCGA-G9-6361-01 19 55687185 55687185 C T SYT5 Silent p.S144S 0.37 TCGA-G9-6361-01 19 6707522 6707522 G A C3 Missense_Mutation p.R668C 0.05 deleterious(0) possibly_damaging(0.776) TCGA-G9-6361-01 1 113245708 113245708 C T RHOC Missense_Mutation p.E64K 0.15 deleterious(0.03) benign(0.092) TCGA-G9-6361-01 1 155891693 155891693 G C KIAA0907 Missense_Mutation p.S324C 0.24 deleterious(0.01) probably_damaging(0.912) TCGA-G9-6361-01 1 196285089 196285089 T A KCNT2 Missense_Mutation p.T806S 0.38 tolerated(0.64) probably_damaging(0.986) TCGA-G9-6361-01 1 196398768 196398768 C A KCNT2 Missense_Mutation p.W253L 0.33 deleterious(0.02) benign(0.315) TCGA-G9-6361-01 21 32253539 32253539 C T KRTAP11-1 Missense_Mutation p.R102Q 0.41 tolerated(0.29) benign(0.11) TCGA-G9-6361-01 2 85533435 85533435 G A TCF7L1 Missense_Mutation p.A366T 0.13 deleterious(0.03) probably_damaging(1) TCGA-G9-6361-01 3 141896383 141896383 C A GK5 Missense_Mutation p.A362S 0.11 deleterious(0) probably_damaging(0.997) TCGA-G9-6361-01 3 47884611 47884611 C G DHX30 Missense_Mutation p.H269D 0.29 deleterious(0.01) benign(0.093) TCGA-G9-6361-01 4 48611011 48611011 G A FRYL Nonsense_Mutation p.Q189* 0.18 TCGA-G9-6361-01 4 6107489 6107489 C T JAKMIP1 Missense_Mutation p.R112Q 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-G9-6361-01 4 73968249 73968249 G A ANKRD17 Missense_Mutation p.R1473W 0.39 benign(0.428) TCGA-G9-6361-01 5 140070850 140070850 G A HARS Nonsense_Mutation p.Q14* 0.11 TCGA-G9-6361-01 5 33535013 33535013 G T ADAMTS12 Missense_Mutation p.Q1511K 0.36 tolerated(0.68) benign(0.048) TCGA-G9-6361-01 6 54219401 54219401 G A TINAG Missense_Mutation p.R406Q 0.09 tolerated(0.4) benign(0.011) TCGA-G9-6361-01 7 104377297 104377297 A - LHFPL3 Frame_Shift_Del p.F208Lfs*10 0.47 TCGA-G9-6361-01 7 117400554 117400554 G T CTTNBP2 Missense_Mutation p.T1036N 0.39 tolerated(0.1) benign(0.183) TCGA-G9-6361-01 7 91621525 91621525 G T AKAP9 Missense_Mutation p.R135S 0.10 possibly_damaging(0.571) TCGA-G9-6361-01 8 13162748 13162748 C T DLC1 Intron 0.49 TCGA-G9-6361-01 8 139209802 139209802 C T FAM135B Silent p.L260L 0.16 TCGA-G9-6361-01 9 140777404 140777404 G A CACNA1B Intron 0.17 TCGA-G9-6361-01 9 20978420 20978420 G C FOCAD Missense_Mutation p.L1448F 0.31 tolerated(0.34) benign(0.424) TCGA-G9-6361-01 9 33135276 33135276 G A B4GALT1 Missense_Mutation p.R187W 0.22 deleterious(0) probably_damaging(1) TCGA-G9-6361-01 X 114541233 114541233 C T LUZP4 Missense_Mutation p.T269I 0.68 tolerated(0.23) benign(0.048) TCGA-G9-6361-01 X 151514068 151514068 G A GABRA3 Nonsense_Mutation p.R83* 0.06 TCGA-G9-6361-01 X 17705984 17705984 G A NHS Missense_Mutation p.A230T 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-G9-6362-01 11 123811134 123811134 G A OR4D5 Missense_Mutation p.V271I 0.20 tolerated(0.33) benign(0.01) TCGA-G9-6362-01 11 132180059 132180059 G T NTM Missense_Mutation p.G239W 0.09 deleterious(0) probably_damaging(1) TCGA-G9-6362-01 11 55999741 55999741 C T OR5T2 Silent p.S307S 0.04 TCGA-G9-6362-01 11 65637423 65637423 G C EFEMP2 Missense_Mutation p.A211G 0.06 tolerated(0.2) possibly_damaging(0.489) TCGA-G9-6362-01 12 113748108 113748108 G T SLC8B1 Silent p.I396I 0.47 TCGA-G9-6362-01 12 32134717 32134717 A G KIAA1551 Silent p.R276R 0.05 TCGA-G9-6362-01 13 100635173 100635173 A G ZIC2 Silent p.T285T 0.44 TCGA-G9-6362-01 13 103710721 103710721 G T SLC10A2 Missense_Mutation p.T130N 0.08 deleterious(0) probably_damaging(0.995) TCGA-G9-6362-01 14 74426130 74426130 T C COQ6 Silent p.L266L 0.39 TCGA-G9-6362-01 16 48258247 48258247 C G ABCC11 Missense_Mutation p.L163F 0.24 tolerated(0.12) benign(0.018) TCGA-G9-6362-01 17 18024963 18024963 G A MYO15A Missense_Mutation p.R950H 0.24 unknown(0) TCGA-G9-6362-01 17 32483118 32483118 T G ASIC2 Missense_Mutation p.H145P 0.11 tolerated(0.27) benign(0.001) TCGA-G9-6362-01 17 34249537 34249537 T G RDM1 Intron 0.12 TCGA-G9-6362-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.37 deleterious(0.01) possibly_damaging(0.655) TCGA-G9-6362-01 17 77768836 77768836 C T CBX8 Silent p.S256S 0.39 TCGA-G9-6362-01 19 3600542 3600542 C T TBXA2R Missense_Mutation p.A31T 0.27 deleterious(0.01) possibly_damaging(0.702) TCGA-G9-6362-01 1 1271546 1271546 G A DVL1 Silent p.C663C 0.24 TCGA-G9-6362-01 1 145439910 145439910 T C TXNIP Silent p.N152N 0.20 TCGA-G9-6362-01 1 153177307 153177307 C T LELP1 Missense_Mutation p.R42C 0.07 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-G9-6362-01 1 158390384 158390384 G T OR10K2 Silent p.T91T 0.06 TCGA-G9-6362-01 1 35579021 35579021 A G ZMYM1 Silent p.Q530Q 0.08 TCGA-G9-6362-01 20 3765219 3765219 A G CENPB 3'UTR 0.47 TCGA-G9-6362-01 2 179412022 179412022 G A TTN Silent p.S31410S 0.13 TCGA-G9-6362-01 2 179435374 179435374 C G TTN Missense_Mutation p.S25162T 0.33 TCGA-G9-6362-01 3 100373726 100373726 T C GPR128 Missense_Mutation p.I476T 0.05 tolerated(0.44) benign(0.002) TCGA-G9-6362-01 3 107096617 107096617 C T CCDC54 Silent p.D61D 0.08 TCGA-G9-6362-01 3 49028271 49028271 G A P4HTM Silent p.G120G 0.09 TCGA-G9-6362-01 4 154709740 154709740 A G SFRP2 Missense_Mutation p.V83A 0.14 deleterious(0) probably_damaging(0.992) TCGA-G9-6362-01 5 140711178 140711178 C T PCDHGA1 Silent p.F309F 0.12 TCGA-G9-6362-01 5 16465318 16465318 T A ZNF622 Nonsense_Mutation p.K153* 0.11 TCGA-G9-6362-01 5 23526359 23526359 C T PRDM9 Missense_Mutation p.H388Y 0.36 tolerated(0.24) benign(0.313) TCGA-G9-6362-01 5 37038824 37038824 T A NIPBL Missense_Mutation p.L2031H 0.09 deleterious(0) probably_damaging(0.999) TCGA-G9-6362-01 5 63256567 63256567 C T HTR1A Missense_Mutation p.R327H 0.09 deleterious(0.01) possibly_damaging(0.873) TCGA-G9-6362-01 5 78415119 78415119 A T BHMT Silent p.S68S 0.46 TCGA-G9-6362-01 5 81354375 81354375 C G ATG10 Nonsense_Mutation p.S57* 0.11 TCGA-G9-6362-01 6 26033605 26033605 C T HIST1H2AB Silent p.L64L 0.15 TCGA-G9-6362-01 6 30140170 30140170 C T TRIM15 3'UTR 0.27 TCGA-G9-6362-01 6 34804091 34804091 G T UHRF1BP1 Silent p.L333L 0.28 TCGA-G9-6362-01 6 51915071 51915071 C T PKHD1 Silent p.T721T 0.07 TCGA-G9-6362-01 8 144811144 144811144 T C FAM83H Missense_Mutation p.S244G 0.06 deleterious(0.01) benign(0.345) TCGA-G9-6362-01 8 19690802 19690802 G A INTS10 Silent p.A500A 0.23 TCGA-G9-6362-01 8 22005876 22005876 C T LGI3 Missense_Mutation p.A482T 0.14 deleterious(0.02) benign(0.339) TCGA-G9-6362-01 8 67012255 67012255 A T DNAJC5B Missense_Mutation p.T197S 0.14 deleterious_low_confidence(0.01) benign(0.297) TCGA-G9-6362-01 9 123171436 123171436 C A CDK5RAP2 Nonsense_Mutation p.E1525* 0.06 TCGA-G9-6362-01 9 130854176 130854176 A G SLC25A25 Intron 0.38 TCGA-G9-6362-01 9 133780631 133780631 G A FIBCD1 Silent p.S372S 0.29 TCGA-G9-6362-01 X 3227796 3227796 G A MXRA5 Silent p.L2816L 0.88 TCGA-G9-6362-01 X 40572273 40572273 C T MED14 Missense_Mutation p.R225H 0.77 tolerated(0.43) benign(0.022) TCGA-G9-6362-01 X 70461110 70461110 G C ZMYM3 Missense_Mutation p.P1296R 0.16 deleterious(0) probably_damaging(0.999) TCGA-G9-6362-01 X 70461111 70461111 G T ZMYM3 Missense_Mutation p.P1296T 0.16 deleterious(0) probably_damaging(0.999) TCGA-G9-6363-01 10 134145147 134145147 G A LRRC27 5'Flank 0.25 TCGA-G9-6363-01 10 38345420 38345420 A T ZNF33A Missense_Mutation p.S790C 0.21 deleterious(0) possibly_damaging(0.794) TCGA-G9-6363-01 12 109639448 109639448 T A ACACB Missense_Mutation p.L952Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-G9-6363-01 12 114793645 114793645 G A TBX5 Missense_Mutation p.P417S 0.18 deleterious(0.03) benign(0.062) TCGA-G9-6363-01 12 129563125 129563125 A G TMEM132D Missense_Mutation p.I690T 0.04 deleterious(0.04) benign(0.248) TCGA-G9-6363-01 12 88514920 88514920 T C CEP290 Missense_Mutation p.T405A 0.06 benign(0.005) TCGA-G9-6363-01 13 43872565 43872565 C A ENOX1 Nonsense_Mutation p.E455* 0.26 TCGA-G9-6363-01 14 81251838 81251838 G A CEP128 Nonsense_Mutation p.Q538* 0.32 TCGA-G9-6363-01 16 24104205 24104205 G A PRKCB Missense_Mutation p.S208N 0.08 tolerated(0.07) benign(0.029) TCGA-G9-6363-01 17 16594036 16594036 G T CCDC144A Missense_Mutation p.D108Y 0.10 deleterious_low_confidence(0) benign(0.367) TCGA-G9-6363-01 17 18151872 18151872 G C FLII Missense_Mutation p.L728V 0.10 deleterious(0) benign(0.297) TCGA-G9-6363-01 17 38855747 38855747 C A KRT24 Missense_Mutation p.R437L 0.15 tolerated(0.08) probably_damaging(0.939) TCGA-G9-6363-01 17 43227525 43227526 - GGAGCT HEXIM1 In_Frame_Ins p.E328_L329dup 0.14 TCGA-G9-6363-01 17 67252297 67252297 C T ABCA5 Splice_Site p.X1286_splice 0.05 TCGA-G9-6363-01 17 7680786 7680786 C G DNAH2 Nonsense_Mutation p.S1694* 0.08 TCGA-G9-6363-01 19 43237124 43237124 G A PSG3 Missense_Mutation p.P174L 0.04 tolerated(0.07) benign(0.032) TCGA-G9-6363-01 19 45567373 45567375 GAG - CLASRP In_Frame_Del p.E338del 0.31 TCGA-G9-6363-01 19 55789207 55789207 T C HSPBP1 Missense_Mutation p.Q73R 0.23 tolerated(0.12) benign(0.197) TCGA-G9-6363-01 1 114523513 114523513 C T OLFML3 Intron 0.33 TCGA-G9-6363-01 1 155870061 155870061 T C RIT1 3'Flank 0.16 TCGA-G9-6363-01 1 166039642 166039642 G A FAM78B Missense_Mutation p.R208W 0.28 deleterious(0) probably_damaging(0.971) TCGA-G9-6363-01 1 171250000 171250000 T C FMO1 Missense_Mutation p.F235L 0.21 tolerated(0.55) benign(0.032) TCGA-G9-6363-01 1 207133044 207133044 T C FCAMR Missense_Mutation p.K518R 0.19 tolerated(0.39) benign(0.028) TCGA-G9-6363-01 1 227920349 227920349 T G JMJD4 Missense_Mutation p.N379T 0.18 deleterious(0) probably_damaging(0.944) TCGA-G9-6363-01 1 247014376 247014376 G C AHCTF1 Silent p.A1653A 0.04 TCGA-G9-6363-01 1 43200699 43200699 A T CLDN19 3'UTR 0.33 TCGA-G9-6363-01 1 46493409 46493409 A T MAST2 Silent p.L642L 0.30 TCGA-G9-6363-01 1 65301865 65301865 A C JAK1 Missense_Mutation p.F1058L 0.08 tolerated(0.07) probably_damaging(0.999) TCGA-G9-6363-01 21 45993895 45993895 C T KRTAP10-4 Missense_Mutation p.P87L 0.14 deleterious(0.01) unknown(0) TCGA-G9-6363-01 2 118715997 118715997 G C CCDC93 Missense_Mutation p.R317G 0.24 deleterious(0) benign(0.177) TCGA-G9-6363-01 2 135743788 135743788 C A MAP3K19 Missense_Mutation p.R885L 0.13 tolerated(0.07) benign(0.024) TCGA-G9-6363-01 2 179537132 179537132 A G TTN Splice_Site p.X11644_splice 0.03 TCGA-G9-6363-01 3 122418827 122418827 G A PARP14 Missense_Mutation p.G476S 0.13 deleterious(0.05) benign(0.141) TCGA-G9-6363-01 3 15727591 15727591 G C ANKRD28 Missense_Mutation p.T666R 0.15 deleterious(0.02) possibly_damaging(0.679) TCGA-G9-6363-01 4 107216263 107216263 C G TBCK Missense_Mutation p.R85T 0.20 tolerated(0.45) benign(0.063) TCGA-G9-6363-01 4 184182184 184182184 T C WWC2 Missense_Mutation p.Y470H 0.05 deleterious(0) possibly_damaging(0.876) TCGA-G9-6363-01 5 140242306 140242306 C T AC005609.1 3'UTR 0.33 TCGA-G9-6363-01 5 140476803 140476803 G A PCDHB2 3'UTR 0.26 TCGA-G9-6363-01 6 149826610 149826610 T C PPIL4 Silent p.K486K 0.12 TCGA-G9-6363-01 6 26271452 26271452 C T HIST1H3G Missense_Mutation p.R54H 0.06 tolerated_low_confidence(0.05) benign(0.18) TCGA-G9-6363-01 6 497413 497413 C T EXOC2 Missense_Mutation p.R838Q 0.20 deleterious(0) possibly_damaging(0.885) TCGA-G9-6363-01 6 69758171 69758171 C T BAI3 Silent p.N734N 0.15 TCGA-G9-6363-01 7 150554114 150554114 G A AOC1 Missense_Mutation p.D186N 0.10 tolerated(0.06) possibly_damaging(0.676) TCGA-G9-6363-01 7 87179322 87179322 G A ABCB1 Missense_Mutation p.R467W 0.07 deleterious(0) probably_damaging(1) TCGA-G9-6363-01 7 90042673 90042673 C T CLDN12 Missense_Mutation p.S228F 0.21 deleterious(0) probably_damaging(0.997) TCGA-G9-6363-01 8 144623605 144623605 G A ZC3H3 5'UTR 0.25 TCGA-G9-6363-01 9 1051731 1051731 C T DMRT2 Missense_Mutation p.P40S 0.30 tolerated_low_confidence(0.16) unknown(0) TCGA-G9-6363-01 9 110249346 110249346 C G KLF4 Missense_Mutation p.K409N 0.06 deleterious(0) benign(0.334) TCGA-G9-6363-01 9 139581703 139581703 A T AGPAT2 Missense_Mutation p.L36Q 0.12 deleterious(0.01) possibly_damaging(0.519) TCGA-G9-6363-01 X 153665594 153665594 C T GDI1 5'UTR 0.63 TCGA-G9-6364-01 10 105761232 105761232 C A SLK Missense_Mutation p.P299T 0.17 deleterious(0) probably_damaging(0.999) TCGA-G9-6364-01 11 129979414 129979414 C A APLP2 Missense_Mutation p.Q66K 0.06 deleterious(0.02) probably_damaging(0.983) TCGA-G9-6364-01 11 71259904 71259904 C T KRTAP5-9 Silent p.G67G 0.05 TCGA-G9-6364-01 12 76740951 76740951 C T BBS10 Missense_Mutation p.G272R 0.32 tolerated(0.07) benign(0.2) TCGA-G9-6364-01 13 21436893 21436893 G T XPO4 Silent p.R94R 0.03 TCGA-G9-6364-01 14 106552556 106552556 C A IGHV3-9 Missense_Mutation p.G28V 0.20 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-G9-6364-01 14 91360831 91360831 T G RPS6KA5 Missense_Mutation p.I524L 0.32 tolerated(0.21) benign(0.405) TCGA-G9-6364-01 15 83346500 83346500 C A AP3B2 Missense_Mutation p.G434V 0.22 deleterious(0) probably_damaging(0.995) TCGA-G9-6364-01 15 91027480 91027480 C G IQGAP1 Missense_Mutation p.P1273A 0.21 deleterious(0.01) benign(0.031) TCGA-G9-6364-01 17 7483262 7483263 CA - CD68 Frame_Shift_Del p.H62Qfs*35 0.37 TCGA-G9-6364-01 19 22605057 22605057 C T ZNF98 5'UTR 0.29 TCGA-G9-6364-01 19 4442949 4442949 C T CHAF1A Missense_Mutation p.S933F 0.24 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-G9-6364-01 19 55264147 55264147 G C KIR2DL3 3'UTR 0.16 TCGA-G9-6364-01 1 10502561 10502561 A T APITD1 Intron 0.17 TCGA-G9-6364-01 20 3236652 3236652 C G C20orf194 Missense_Mutation p.Q1087H 0.22 deleterious(0) probably_damaging(0.999) TCGA-G9-6364-01 20 40735499 40735499 T G PTPRT Missense_Mutation p.N1106T 0.04 tolerated(1) benign(0.014) TCGA-G9-6364-01 2 1499889 1499889 G A TPO Missense_Mutation p.G712D 0.06 deleterious(0.03) possibly_damaging(0.521) TCGA-G9-6364-01 2 196681466 196681467 - A DNAH7 Frame_Shift_Ins p.S3216Ffs*4 0.11 TCGA-G9-6364-01 2 30987143 30987143 T C CAPN13 Missense_Mutation p.Y185C 0.30 tolerated(0.11) probably_damaging(0.976) TCGA-G9-6364-01 2 54753666 54753666 G A SPTBN1 Silent p.A37A 0.23 TCGA-G9-6364-01 3 25778887 25778887 T C NGLY1 Missense_Mutation p.N314S 0.10 deleterious(0) probably_damaging(0.997) TCGA-G9-6364-01 4 148545026 148545026 T G TMEM184C Missense_Mutation p.F55L 0.26 deleterious(0) probably_damaging(0.992) TCGA-G9-6364-01 4 169300651 169300651 T C DDX60L Missense_Mutation p.Y1409C 0.42 deleterious(0) probably_damaging(0.982) TCGA-G9-6364-01 4 25678365 25678365 C T SLC34A2 Silent p.A689A 0.16 TCGA-G9-6364-01 4 88343974 88343974 C T NUDT9 5'UTR 0.06 TCGA-G9-6364-01 6 116784932 116784932 G A FAM26F 3'UTR 0.30 TCGA-G9-6364-01 6 34004179 34004179 G A GRM4 Missense_Mutation p.R570C 0.29 deleterious(0.01) possibly_damaging(0.513) TCGA-G9-6364-01 6 56882125 56882125 G A BEND6 Missense_Mutation p.A214T 0.09 tolerated(0.06) probably_damaging(0.973) TCGA-G9-6364-01 7 100349724 100349724 G - ZAN Frame_Shift_Del p.E666Rfs*335 0.33 TCGA-G9-6364-01 8 104340556 104340556 A G FZD6 Missense_Mutation p.I485V 0.23 tolerated(0.33) benign(0.07) TCGA-G9-6364-01 9 82320809 82320809 C T TLE4 Silent p.S245S 0.04 TCGA-G9-6365-01 10 24508665 24508665 C T KIAA1217 Missense_Mutation p.R61C 0.17 deleterious(0) probably_damaging(0.927) TCGA-G9-6365-01 11 55064978 55064978 T C TRIM51HP RNA 0.26 TCGA-G9-6365-01 12 10233907 10233907 T A CLEC1A Missense_Mutation p.N107I 0.05 tolerated(0.16) possibly_damaging(0.548) TCGA-G9-6365-01 12 122669084 122669084 C T LRRC43 Missense_Mutation p.P57S 0.08 tolerated(0.1) probably_damaging(0.999) TCGA-G9-6365-01 14 24682652 24682652 C G CHMP4A Missense_Mutation p.E41D 0.10 tolerated(0.11) benign(0.007) TCGA-G9-6365-01 16 3658496 3658496 G A SLX4 Missense_Mutation p.A157V 0.04 tolerated(0.27) benign(0.419) TCGA-G9-6365-01 16 68846165 68846165 C T CDH1 Missense_Mutation p.T379M 0.08 tolerated(0.25) benign(0.014) TCGA-G9-6365-01 16 70818709 70818709 G A VAC14 Silent p.S152S 0.04 TCGA-G9-6365-01 17 27844648 27844648 A C TAOK1 Missense_Mutation p.N628H 0.23 deleterious(0.05) benign(0.045) TCGA-G9-6365-01 19 43519267 43519267 C A PSG11 Splice_Site p.X322_splice 0.07 TCGA-G9-6365-01 19 51361766 51361766 A C KLK3 Missense_Mutation p.D182A 0.03 tolerated(0.09) benign(0.17) TCGA-G9-6365-01 1 110257972 110257972 C T GSTM5 Intron 0.50 TCGA-G9-6365-01 1 158637764 158637764 T C SPTA1 Missense_Mutation p.Q641R 0.09 tolerated(0.34) benign(0.155) TCGA-G9-6365-01 1 167095421 167095421 C T DUSP27 Silent p.Y351Y 0.20 TCGA-G9-6365-01 1 248343988 248343988 G A OR2M2 Missense_Mutation p.R234H 0.29 tolerated(0.09) benign(0.036) TCGA-G9-6365-01 1 3496464 3496464 C A MEGF6 Missense_Mutation p.G136C 0.22 deleterious(0) probably_damaging(0.993) TCGA-G9-6365-01 20 57415470 57415470 C T RP4-806M20.3 5'Flank 0.26 TCGA-G9-6365-01 2 179432336 179432336 G A TTN Missense_Mutation p.P26175S 0.06 TCGA-G9-6365-01 3 101450746 101450746 A T CEP97 Missense_Mutation p.R170S 0.04 tolerated(0.47) benign(0.008) TCGA-G9-6365-01 4 155506852 155506852 A G FGA Missense_Mutation p.S577P 0.23 deleterious(0.03) possibly_damaging(0.897) TCGA-G9-6365-01 5 140516811 140516811 G A PCDHB5 Missense_Mutation p.A599T 0.23 deleterious_low_confidence(0) possibly_damaging(0.854) TCGA-G9-6365-01 5 140741505 140741505 C T PCDHGB2 Silent p.N601N 0.12 TCGA-G9-6365-01 5 74056731 74056731 T C GFM2 Silent p.L48L 0.04 TCGA-G9-6365-01 5 889273 889273 G A BRD9 Missense_Mutation p.P157S 0.47 deleterious(0) benign(0.029) TCGA-G9-6365-01 6 26046086 26046086 C T HIST1H3C 3'UTR 0.16 TCGA-G9-6365-01 6 42609419 42609427 CTAGTAAAC - UBR2 In_Frame_Del p.L674_N676del 0.37 TCGA-G9-6365-01 6 47763181 47763181 C T OPN5 Missense_Mutation p.A213V 0.27 tolerated(0.98) benign(0.038) TCGA-G9-6365-01 7 44185094 44185094 A G GCK Splice_Site p.X419_splice 0.25 TCGA-G9-6365-01 8 1626466 1626466 C T DLGAP2 Missense_Mutation p.T712M 0.23 tolerated(0.48) benign(0.019) TCGA-G9-6365-01 8 68950516 68950516 A T PREX2 Missense_Mutation p.K276N 0.29 deleterious(0) probably_damaging(0.937) TCGA-G9-6365-01 9 18504896 18504896 T C ADAMTSL1 Missense_Mutation p.C45R 0.10 deleterious(0) probably_damaging(0.997) TCGA-G9-6366-01 10 89717713 89717715 GTT - PTEN In_Frame_Del p.L247del 0.25 TCGA-G9-6366-01 12 100452768 100452768 A G UHRF1BP1L Silent p.L763L 0.28 TCGA-G9-6366-01 12 102072013 102072013 T A MYBPC1 Silent p.P1074P 0.30 TCGA-G9-6366-01 12 18872504 18872504 G C PLCZ1 Missense_Mutation p.L144V 0.27 tolerated(0.28) benign(0.232) TCGA-G9-6366-01 12 54118947 54118947 T C CALCOCO1 Missense_Mutation p.N27S 0.15 tolerated(0.29) probably_damaging(0.932) TCGA-G9-6366-01 12 58159257 58159257 G A CYP27B1 Missense_Mutation p.R138C 0.33 deleterious(0) probably_damaging(1) TCGA-G9-6366-01 13 51918393 51918393 A G SERPINE3 Missense_Mutation p.R88G 0.07 tolerated(0.3) benign(0.049) TCGA-G9-6366-01 14 24026160 24026160 A G THTPA Missense_Mutation p.K65R 0.36 deleterious(0.01) probably_damaging(1) TCGA-G9-6366-01 14 64604565 64604565 A C SYNE2 Missense_Mutation p.K4903Q 0.27 possibly_damaging(0.853) TCGA-G9-6366-01 14 81610735 81610735 C A TSHR 3'UTR 0.13 TCGA-G9-6366-01 15 70959376 70959376 T C UACA Missense_Mutation p.K1216R 0.22 tolerated(0.37) benign(0.005) TCGA-G9-6366-01 17 27963805 27963805 G T SSH2 Missense_Mutation p.N454K 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-G9-6366-01 17 37881014 37881014 T C ERBB2 Silent p.Y781Y 0.29 TCGA-G9-6366-01 18 14542963 14542963 C T POTEC Missense_Mutation p.M61I 0.10 deleterious_low_confidence(0) benign(0.019) TCGA-G9-6366-01 19 10468472 10468472 C A TYK2 Nonsense_Mutation p.E812* 0.30 TCGA-G9-6366-01 19 36275140 36275140 G A ARHGAP33 Silent p.S496S 0.34 TCGA-G9-6366-01 19 36431457 36431457 C G LRFN3 Missense_Mutation p.A377G 0.21 deleterious(0.04) benign(0.306) TCGA-G9-6366-01 1 153314146 153314146 G A PGLYRP4 Silent p.G194G 0.28 TCGA-G9-6366-01 1 160011538 160011538 G A KCNJ10 Missense_Mutation p.T262I 0.04 deleterious(0.03) benign(0.197) TCGA-G9-6366-01 1 246810985 246810985 A G CNST Silent p.G494G 0.09 TCGA-G9-6366-01 1 45293750 45293750 G A PTCH2 Missense_Mutation p.A608V 0.08 tolerated(0.08) benign(0.066) TCGA-G9-6366-01 20 25439071 25439071 C T NINL Missense_Mutation p.R1264H 0.23 tolerated(0.52) benign(0) TCGA-G9-6366-01 20 62851156 62851156 A T MYT1 Missense_Mutation p.S688C 0.09 probably_damaging(0.999) TCGA-G9-6366-01 22 19119476 19119476 G C TSSK2 Missense_Mutation p.Q188H 0.26 deleterious(0) possibly_damaging(0.619) TCGA-G9-6366-01 22 41573977 41573977 C T EP300 Missense_Mutation p.R2088W 0.35 probably_damaging(0.993) TCGA-G9-6366-01 2 152732968 152732968 C A CACNB4 Nonsense_Mutation p.E165* 0.39 TCGA-G9-6366-01 2 234237163 234237163 C T SAG Silent p.A184A 0.04 TCGA-G9-6366-01 3 45745007 45745007 C A SACM1L Missense_Mutation p.S37Y 0.35 deleterious(0) probably_damaging(0.96) TCGA-G9-6366-01 3 9962224 9962224 G A IL17RC Missense_Mutation p.R243Q 0.15 tolerated(0.53) benign(0.004) TCGA-G9-6366-01 5 37017250 37017250 C G NIPBL Missense_Mutation p.R1636G 0.19 tolerated(0.07) possibly_damaging(0.875) TCGA-G9-6366-01 5 74069862 74069862 C T NSA2 Missense_Mutation p.T231I 0.06 deleterious(0) probably_damaging(0.982) TCGA-G9-6366-01 5 89705562 89705562 G A CETN3 5'UTR 0.28 TCGA-G9-6366-01 6 170667405 170667405 A T FAM120B Missense_Mutation p.Q761L 0.23 deleterious(0) possibly_damaging(0.856) TCGA-G9-6366-01 8 142178473 142178473 G A DENND3 Silent p.P628P 0.35 TCGA-G9-6366-01 8 30210383 30210383 C T TUBBP1 RNA 0.07 TCGA-G9-6366-01 8 30694423 30694423 C T TEX15 Missense_Mutation p.R2743Q 0.04 tolerated(1) benign(0) TCGA-G9-6366-01 X 153072793 153072793 C - PDZD4 Frame_Shift_Del p.A110Rfs*35 0.35 TCGA-G9-6366-01 X 153072795 153072795 G A PDZD4 Missense_Mutation p.P109L 0.40 tolerated(0.24) possibly_damaging(0.656) TCGA-G9-6367-01 1 110884731 110884731 G C RBM15 Missense_Mutation p.G902R 0.06 deleterious(0.02) probably_damaging(0.969) TCGA-G9-6367-01 2 44153050 44153050 T C LRPPRC Silent p.R929R 0.06 TCGA-G9-6367-01 5 178555106 178555106 C A ADAMTS2 Missense_Mutation p.G824V 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-G9-6369-01 10 7808017 7808017 G T KIN Missense_Mutation p.P283H 0.19 deleterious(0.04) possibly_damaging(0.808) TCGA-G9-6369-01 10 88232463 88232463 G A WAPAL Missense_Mutation p.A600V 0.58 tolerated(0.06) possibly_damaging(0.867) TCGA-G9-6369-01 11 92533470 92533470 T C FAT3 Missense_Mutation p.Y2431H 0.43 probably_damaging(1) TCGA-G9-6369-01 12 51138473 51138473 G T DIP2B Nonsense_Mutation p.E1528* 0.22 TCGA-G9-6369-01 12 57864192 57864192 C T GLI1 Missense_Mutation p.R557C 0.36 deleterious(0) probably_damaging(0.998) TCGA-G9-6369-01 12 6204511 6204511 G T VWF Intron 0.41 TCGA-G9-6369-01 13 42742922 42742922 A G DGKH Silent p.K445K 0.69 TCGA-G9-6369-01 14 103442221 103442221 T G CDC42BPB Missense_Mutation p.Q462H 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-G9-6369-01 14 55848836 55848836 G A ATG14 Missense_Mutation p.R241W 0.48 deleterious(0.02) benign(0.243) TCGA-G9-6369-01 15 89760395 89760395 C T RLBP1 Missense_Mutation p.R101H 0.37 deleterious(0) probably_damaging(1) TCGA-G9-6369-01 15 90226553 90226553 T C PEX11A 3'UTR 0.15 TCGA-G9-6369-01 16 21726417 21726417 G A OTOA Missense_Mutation p.V478I 0.07 tolerated(0.57) benign(0.008) TCGA-G9-6369-01 16 5038269 5038269 C G SEC14L5 Missense_Mutation p.H111Q 0.23 tolerated(0.22) benign(0.143) TCGA-G9-6369-01 17 37821715 37821715 G A TCAP Missense_Mutation p.E35K 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-G9-6369-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-G9-6369-01 18 12802000 12802000 T C PTPN2 Missense_Mutation p.M337V 0.52 tolerated(0.45) benign(0) TCGA-G9-6369-01 19 55046936 55046936 C A KIR3DX1 Missense_Mutation p.H161N 0.30 tolerated(0.41) benign(0.095) TCGA-G9-6369-01 1 103404601 103404601 T G COL11A1 Missense_Mutation p.K1143T 0.06 unknown(0) TCGA-G9-6369-01 1 155110477 155110477 C T SLC50A1 Missense_Mutation p.S156L 0.47 deleterious(0) probably_damaging(0.996) TCGA-G9-6369-01 21 34067407 34067407 T G SYNJ1 Missense_Mutation p.N261T 0.37 deleterious(0) possibly_damaging(0.76) TCGA-G9-6369-01 2 173330368 173330368 C A ITGA6 Missense_Mutation p.T95K 0.67 tolerated(0.55) benign(0.015) TCGA-G9-6369-01 3 113507676 113507676 G T ATP6V1A Missense_Mutation p.G278V 0.36 deleterious(0) probably_damaging(0.997) TCGA-G9-6369-01 3 196744089 196744089 C T MFI2 Missense_Mutation p.R262Q 0.40 tolerated(0.06) benign(0.439) TCGA-G9-6369-01 3 78667056 78667056 C T ROBO1 Silent p.E1337E 0.48 TCGA-G9-6369-01 4 68719844 68719844 T G TMPRSS11D Missense_Mutation p.Q64P 0.07 deleterious(0.01) possibly_damaging(0.828) TCGA-G9-6369-01 4 6995922 6995922 C T TBC1D14 Silent p.D285D 0.08 TCGA-G9-6369-01 4 94750645 94750645 A G ATOH1 Missense_Mutation p.N190D 0.44 tolerated(0.73) probably_damaging(0.988) TCGA-G9-6369-01 5 147204248 147204250 GAG - SPINK1 In_Frame_Del p.L72del 0.10 TCGA-G9-6369-01 5 88027604 88027604 C T MEF2C Missense_Mutation p.R269H 0.38 tolerated(0.06) probably_damaging(0.966) TCGA-G9-6369-01 6 107824969 107824969 G A SOBP Missense_Mutation p.E69K 0.06 deleterious(0.04) probably_damaging(0.972) TCGA-G9-6369-01 6 32053654 32053654 C A TNXB Silent p.V1007V 0.04 TCGA-G9-6369-01 6 84883896 84883896 A G KIAA1009 Silent p.F679F 0.15 TCGA-G9-6369-01 8 106813420 106813420 C T ZFPM2 Silent p.F370F 0.05 TCGA-G9-6369-01 8 1844605 1844605 A C ARHGEF10 Missense_Mutation p.E516A 0.05 deleterious(0.04) benign(0.121) TCGA-G9-6369-01 8 66753620 66753620 G A PDE7A Missense_Mutation p.R42W 0.36 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-G9-6369-01 9 100128910 100128910 G A CCDC180 Missense_Mutation p.A1417T 0.08 tolerated(0.06) possibly_damaging(0.695) TCGA-G9-6369-01 9 72131395 72131395 G A APBA1 Silent p.G244G 0.49 TCGA-G9-6369-01 X 44171919 44171919 T C EFHC2 Silent p.G42G 0.92 TCGA-G9-6370-01 3 190345113 190345113 A G IL1RAP Silent p.G259G 0.08 TCGA-G9-6371-01 10 125530493 125530493 G T CPXM2 Missense_Mutation p.S347R 0.13 deleterious(0) probably_damaging(0.999) TCGA-G9-6371-01 10 95326921 95326921 G T FFAR4 Silent p.R148R 0.20 TCGA-G9-6371-01 11 55595260 55595260 G T OR5L2 Missense_Mutation p.C189F 0.30 deleterious(0.02) probably_damaging(1) TCGA-G9-6371-01 12 104413438 104413438 C T GLT8D2 5'UTR 0.08 TCGA-G9-6371-01 12 113748079 113748079 A C SLC8B1 Missense_Mutation p.F406C 0.06 deleterious(0) probably_damaging(1) TCGA-G9-6371-01 12 133351742 133351742 G A GOLGA3 Silent p.R1376R 0.09 TCGA-G9-6371-01 12 417035 417035 C A KDM5A Missense_Mutation p.G1172V 0.07 deleterious(0) probably_damaging(0.989) TCGA-G9-6371-01 12 58004061 58004061 G A ARHGEF25 Missense_Mutation p.G21D 0.11 tolerated_low_confidence(0.64) possibly_damaging(0.508) TCGA-G9-6371-01 13 102359193 102359193 C T ITGBL1 Missense_Mutation p.T407M 0.05 deleterious(0.02) possibly_damaging(0.886) TCGA-G9-6371-01 14 21161988 21161988 C T ANG Missense_Mutation p.H89Y 0.06 tolerated(1) benign(0.004) TCGA-G9-6371-01 14 93404856 93404856 C T ITPK1 3'UTR 0.08 TCGA-G9-6371-01 15 45814243 45814246 TCTC - SLC30A4 Frame_Shift_Del p.E103Yfs*2 0.18 TCGA-G9-6371-01 17 10350461 10350461 G A MYH4 Missense_Mutation p.R1680C 0.42 deleterious(0) benign(0.146) TCGA-G9-6371-01 17 28548700 28548700 T G SLC6A4 Missense_Mutation p.I93L 0.08 deleterious(0) benign(0.253) TCGA-G9-6371-01 17 60028344 60028344 G A MED13 Missense_Mutation p.R2045W 0.12 deleterious(0) probably_damaging(0.995) TCGA-G9-6371-01 19 56041233 56041233 C T SBK2 Missense_Mutation p.R305Q 0.13 tolerated(0.59) benign(0.007) TCGA-G9-6371-01 19 57065989 57065989 C T ZFP28 Missense_Mutation p.T612I 0.06 deleterious(0) probably_damaging(0.976) TCGA-G9-6371-01 1 205238670 205238670 A - TMCC2 Frame_Shift_Del p.D447Afs*15 0.08 TCGA-G9-6371-01 1 22150070 22150070 C T LDLRAD2 3'UTR 0.09 TCGA-G9-6371-01 1 237870322 237870322 C T RYR2 Silent p.I3218I 0.06 TCGA-G9-6371-01 1 247587215 247587215 G A NLRP3 Missense_Mutation p.R157H 0.12 deleterious(0) probably_damaging(0.999) TCGA-G9-6371-01 21 30339290 30339290 T G LTN1 Missense_Mutation p.D554A 0.08 deleterious(0) benign(0.379) TCGA-G9-6371-01 22 31022486 31022486 A T TCN2 Missense_Mutation p.E421V 0.19 tolerated(1) benign(0.125) TCGA-G9-6371-01 22 42264696 42264696 A T SREBF2 Missense_Mutation p.Q207L 0.32 tolerated(0.1) benign(0.367) TCGA-G9-6371-01 2 130832500 130832500 T C POTEF Missense_Mutation p.T849A 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.805) TCGA-G9-6371-01 2 223507640 223507640 C T FARSB Missense_Mutation p.V67I 0.33 tolerated(1) benign(0.002) TCGA-G9-6371-01 2 90260172 90260172 A G IGKV1D-8 Missense_Mutation p.D92G 0.13 deleterious(0.01) benign(0.165) TCGA-G9-6371-01 3 107885800 107885800 A G IFT57 Silent p.T294T 0.24 TCGA-G9-6371-01 4 169393855 169393855 G A DDX60L 5'UTR 0.13 TCGA-G9-6371-01 4 169393856 169393856 C A DDX60L 5'UTR 0.14 TCGA-G9-6371-01 5 176396017 176396017 C A UIMC1 Missense_Mutation p.V247F 0.04 deleterious(0.02) benign(0.431) TCGA-G9-6371-01 6 122792918 122792918 G A SERINC1 5'UTR 0.05 TCGA-G9-6371-01 6 3226894 3226894 C A TUBB2B Missense_Mutation p.V23F 0.08 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-G9-6371-01 6 491185 491185 G A EXOC2 Missense_Mutation p.A854V 0.17 deleterious(0) probably_damaging(0.939) TCGA-G9-6371-01 6 83898366 83898366 T A PGM3 Missense_Mutation p.Q147L 0.06 tolerated(0.29) benign(0.008) TCGA-G9-6371-01 7 139268747 139268747 G A HIPK2 Silent p.S927S 0.04 TCGA-G9-6371-01 7 150773232 150773232 G A SLC4A2 Missense_Mutation p.V1202M 0.04 deleterious(0.02) benign(0.367) TCGA-G9-6371-01 7 81346562 81346562 C T HGF Missense_Mutation p.C464Y 0.10 deleterious(0) probably_damaging(1) TCGA-G9-6371-01 X 51638179 51638179 C T MAGED1 Missense_Mutation p.L82F 0.13 deleterious_low_confidence(0) unknown(0) TCGA-G9-6373-01 10 115612543 115612543 T C DCLRE1A Missense_Mutation p.I133M 0.09 deleterious(0) benign(0.101) TCGA-G9-6373-01 11 106558447 106558447 G A GUCY1A2 Missense_Mutation p.P707L 0.32 deleterious(0) probably_damaging(0.987) TCGA-G9-6373-01 12 109192926 109192926 G A SSH1 Missense_Mutation p.S400L 0.13 deleterious(0) probably_damaging(1) TCGA-G9-6373-01 12 113344830 113344830 C G OAS1 5'UTR 0.25 TCGA-G9-6373-01 12 116446812 116446812 G A MED13L Missense_Mutation p.T469I 0.40 tolerated(0.13) unknown(0) TCGA-G9-6373-01 12 13208628 13208628 G A KIAA1467 Missense_Mutation p.D61N 0.35 tolerated(0.17) probably_damaging(0.926) TCGA-G9-6373-01 19 14730143 14730143 G A EMR3 3'UTR 0.37 TCGA-G9-6373-01 19 51273918 51273918 C T GPR32 Missense_Mutation p.R21C 0.26 tolerated(0.19) benign(0) TCGA-G9-6373-01 1 183077436 183077436 G A LAMC1 Missense_Mutation p.R250K 0.12 tolerated(0.99) benign(0.136) TCGA-G9-6373-01 1 200878355 200878355 C T C1orf106 Silent p.S263S 0.29 TCGA-G9-6373-01 1 205126469 205126469 C T DSTYK Missense_Mutation p.V762M 0.31 deleterious(0) probably_damaging(0.991) TCGA-G9-6373-01 21 11047499 11047499 G T BAGE2 RNA 0.07 TCGA-G9-6373-01 22 24384213 24384213 G A GSTT1 Silent p.L7L 0.43 TCGA-G9-6373-01 22 50987891 50987891 G A KLHDC7B Silent p.A432A 0.31 TCGA-G9-6373-01 2 141680622 141680622 T G LRP1B Missense_Mutation p.K1077N 0.29 probably_damaging(0.954) TCGA-G9-6373-01 2 160287661 160287661 T C BAZ2B Missense_Mutation p.D636G 0.31 possibly_damaging(0.539) TCGA-G9-6373-01 2 239344476 239344476 C G ASB1 Missense_Mutation p.L106V 0.05 tolerated(0.49) probably_damaging(0.999) TCGA-G9-6373-01 2 36691752 36691752 C T CRIM1 Silent p.G315G 0.20 TCGA-G9-6373-01 2 42543187 42543187 A T EML4 Missense_Mutation p.I685L 0.31 tolerated(0.06) benign(0) TCGA-G9-6373-01 3 155206588 155206588 G A PLCH1 Silent p.N788N 0.31 TCGA-G9-6373-01 3 187447543 187447543 C T BCL6 Missense_Mutation p.R217Q 0.28 tolerated(0.3) probably_damaging(0.99) TCGA-G9-6373-01 4 175416699 175416699 C A HPGD Silent p.A166A 0.43 TCGA-G9-6373-01 5 56778328 56778328 C A ACTBL2 Missense_Mutation p.K69N 0.33 deleterious_low_confidence(0.04) benign(0.052) TCGA-G9-6373-01 5 79752812 79752812 G A ZFYVE16 Missense_Mutation p.A1282T 0.34 deleterious(0) possibly_damaging(0.886) TCGA-G9-6373-01 6 56417898 56417898 C T DST Missense_Mutation p.S2608N 0.34 benign(0.03) TCGA-G9-6373-01 7 100607821 100607821 G A MUC3A Silent p.E656E 0.12 TCGA-G9-6373-01 7 151904429 151904429 C AA KMT2C Frame_Shift_Ins p.G1266Vfs*55 0.17 TCGA-G9-6373-01 8 139662012 139662012 T C COL22A1 Missense_Mutation p.N1115D 0.47 unknown(0) TCGA-G9-6373-01 8 42852766 42852766 T C HOOK3 Missense_Mutation p.S536P 0.19 deleterious(0.03) possibly_damaging(0.503) TCGA-G9-6373-01 9 72131722 72131722 G A APBA1 Silent p.A135A 0.30 TCGA-G9-6373-01 X 118238971 118238971 C A KIAA1210 Missense_Mutation p.S351I 0.05 tolerated(1) benign(0) TCGA-G9-6377-01 10 132915191 132915191 T A TCERG1L Missense_Mutation p.E422D 0.19 tolerated(0.19) benign(0.128) TCGA-G9-6377-01 10 98138802 98138802 C T TLL2 Missense_Mutation p.V748I 0.10 tolerated(0.41) benign(0.008) TCGA-G9-6377-01 11 56185184 56185184 G C OR5R1 Missense_Mutation p.N175K 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-G9-6377-01 12 20870127 20870127 T A SLCO1C1 Nonsense_Mutation p.C246* 0.08 TCGA-G9-6377-01 12 53666575 53666575 T G ESPL1 Silent p.S480S 0.09 TCGA-G9-6377-01 12 57574174 57574174 C T LRP1 Silent p.I1766I 0.10 TCGA-G9-6377-01 13 52639439 52639439 G C NEK5 3'UTR 0.21 TCGA-G9-6377-01 16 15737174 15737174 C T NDE1 5'UTR 0.33 TCGA-G9-6377-01 16 50745558 50745558 A G NOD2 Missense_Mutation p.D579G 0.14 deleterious(0.01) possibly_damaging(0.78) TCGA-G9-6377-01 18 3135567 3135567 C A MYOM1 Silent p.V729V 0.45 TCGA-G9-6377-01 19 42410938 42410938 A T ARHGEF1 Nonstop_Mutation p.*928Cext*19 0.34 TCGA-G9-6377-01 19 42566936 42566936 C T GRIK5 Missense_Mutation p.V106M 0.32 deleterious(0) possibly_damaging(0.889) TCGA-G9-6377-01 19 53304661 53304661 G A ZNF28 Missense_Mutation p.S146L 0.05 tolerated(0.09) benign(0.006) TCGA-G9-6377-01 1 100154852 100154852 A T PALMD Missense_Mutation p.R346W 0.33 deleterious(0) possibly_damaging(0.599) TCGA-G9-6377-01 1 150297416 150297416 A G PRPF3 Missense_Mutation p.R6G 0.05 deleterious(0) probably_damaging(0.94) TCGA-G9-6377-01 1 75038906 75038906 C A C1orf173 Nonsense_Mutation p.E830* 0.08 TCGA-G9-6377-01 20 1902248 1902248 T G SIRPA Missense_Mutation p.V215G 0.06 deleterious(0) probably_damaging(0.977) TCGA-G9-6377-01 20 60448792 60448792 G A CDH4 Missense_Mutation p.V296M 0.34 deleterious(0) probably_damaging(0.977) TCGA-G9-6377-01 2 179463526 179463526 C T TTN Missense_Mutation p.V18971M 0.07 TCGA-G9-6377-01 2 86067399 86067399 G A ST3GAL5 Silent p.F375F 0.30 TCGA-G9-6377-01 3 132165395 132165395 G T DNAJC13 Splice_Site p.X48_splice 0.39 TCGA-G9-6377-01 3 186362642 186362642 C G FETUB Missense_Mutation p.A176G 0.05 deleterious(0.05) possibly_damaging(0.478) TCGA-G9-6377-01 4 119978626 119978626 A G SYNPO2 Missense_Mutation p.Y1108C 0.27 tolerated(0.11) benign(0.006) TCGA-G9-6377-01 4 20255579 20255579 C A SLIT2 Silent p.R47R 0.05 TCGA-G9-6377-01 4 47427856 47427856 C T GABRB1 Missense_Mutation p.R416C 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-G9-6377-01 5 52362978 52362978 A C ITGA2 Missense_Mutation p.E658D 0.07 tolerated(0.61) benign(0.002) TCGA-G9-6377-01 6 170114863 170114863 G C PHF10 Missense_Mutation p.L257V 0.07 tolerated(0.11) benign(0.439) TCGA-G9-6377-01 6 46793078 46793078 A C MEP1A Missense_Mutation p.E209A 0.06 tolerated(0.06) probably_damaging(0.96) TCGA-G9-6377-01 6 56468037 56468037 G A DST Intron 0.50 TCGA-G9-6377-01 7 75053866 75053867 - T POM121C Frame_Shift_Ins p.D272Rfs*20 0.28 TCGA-G9-6377-01 8 131848633 131848633 G A ADCY8 Silent p.S855S 0.40 TCGA-G9-6377-01 8 133935616 133935616 T A TG Missense_Mutation p.L1521Q 0.06 deleterious(0) probably_damaging(0.994) TCGA-G9-6377-01 9 77377204 77377204 A C TRPM6 Missense_Mutation p.D1461E 0.30 tolerated_low_confidence(0.05) benign(0.057) TCGA-G9-6377-01 Y 4967494 4967494 T A PCDH11Y Silent p.T625T 0.12 TCGA-G9-6378-01 10 104536133 104536133 C G WBP1L Intron 0.05 TCGA-G9-6378-01 11 65273415 65273415 T - MALAT1 RNA 0.13 TCGA-G9-6378-01 11 66026227 66026227 G T KLC2 Silent p.S54S 0.08 TCGA-G9-6378-01 12 26864155 26864156 - T ITPR2 Frame_Shift_Ins p.S301Kfs*6 0.10 TCGA-G9-6378-01 12 50186731 50186731 C T NCKAP5L Missense_Mutation p.G1127R 0.24 deleterious(0) probably_damaging(1) TCGA-G9-6378-01 12 72680634 72680634 C T TRHDE Missense_Mutation p.T318M 0.04 deleterious(0.04) probably_damaging(0.997) TCGA-G9-6378-01 14 68220894 68220894 G T ZFYVE26 Missense_Mutation p.T2341N 0.12 deleterious(0) probably_damaging(0.999) TCGA-G9-6378-01 14 68220896 68220896 C A ZFYVE26 Silent p.V2340V 0.11 TCGA-G9-6378-01 15 42839684 42839684 C A LRRC57 Silent p.T89T 0.12 TCGA-G9-6378-01 15 51676022 51676022 G A GLDN Silent p.L158L 0.17 TCGA-G9-6378-01 15 51795002 51795002 C T DMXL2 Splice_Site p.X998_splice 0.13 TCGA-G9-6378-01 15 75013056 75013056 G A CYP1A1 Missense_Mutation p.A438V 0.19 tolerated(0.09) benign(0.005) TCGA-G9-6378-01 15 83349301 83349301 C G AP3B2 Missense_Mutation p.Q326H 0.17 deleterious(0) probably_damaging(0.976) TCGA-G9-6378-01 16 11782231 11782236 GGCAGA - TXNDC11 In_Frame_Del p.S656_A657del 0.12 TCGA-G9-6378-01 17 39388891 39388891 C T KRTAP9-3 Silent p.C46C 0.12 TCGA-G9-6378-01 1 153085079 153085079 G A SPRR2F Missense_Mutation p.S44F 0.14 unknown(0) TCGA-G9-6378-01 1 158725008 158725008 C A OR6K6 Missense_Mutation p.L135I 0.12 deleterious(0.02) benign(0.202) TCGA-G9-6378-01 1 162824943 162824943 C T C1orf110 Missense_Mutation p.G174D 0.16 tolerated(0.45) possibly_damaging(0.483) TCGA-G9-6378-01 1 178269157 178269157 A G RASAL2 Missense_Mutation p.T121A 0.13 tolerated(0.39) benign(0) TCGA-G9-6378-01 1 197407883 197407883 C G CRB1 Intron 0.22 TCGA-G9-6378-01 1 228509861 228509861 C T OBSCN Missense_Mutation p.P6064S 0.10 benign(0.072) TCGA-G9-6378-01 1 94506837 94506837 G A ABCA4 Silent p.C1150C 0.20 TCGA-G9-6378-01 2 206562286 206562286 G A NRP2 Missense_Mutation p.R31H 0.05 tolerated(0.58) probably_damaging(0.998) TCGA-G9-6378-01 2 220081146 220081146 A G ABCB6 Missense_Mutation p.W304R 0.25 tolerated(0.11) benign(0.005) TCGA-G9-6378-01 4 152201037 152201037 G A PRSS48 Missense_Mutation p.D48N 0.12 tolerated(0.46) benign(0.002) TCGA-G9-6378-01 5 141017909 141017909 C G RELL2 Silent p.L39L 0.04 TCGA-G9-6378-01 5 90106488 90106488 C T GPR98 Silent p.F5137F 0.13 TCGA-G9-6378-01 6 31940215 31940215 C T STK19 Silent p.I119I 0.11 TCGA-G9-6378-01 6 32122416 32122416 G A PPT2 Silent p.L21L 0.16 TCGA-G9-6378-01 6 36922496 36922496 G T PI16 5'UTR 0.17 TCGA-G9-6378-01 7 41739857 41739857 G A INHBA Missense_Mutation p.A39V 0.13 tolerated(0.06) probably_damaging(0.956) TCGA-G9-6378-01 7 48443343 48443343 C A ABCA13 Silent p.G3979G 0.18 TCGA-G9-6378-01 8 8238940 8238940 G C SGK223 Silent p.A106A 0.15 TCGA-G9-6378-01 9 139617909 139617909 C T FAM69B Missense_Mutation p.R327C 0.14 deleterious(0.03) probably_damaging(0.953) TCGA-G9-6378-01 9 140140297 140140297 C T FAM166A Missense_Mutation p.G22D 0.06 deleterious(0) probably_damaging(1) TCGA-G9-6378-01 9 21367472 21367472 T C IFNA13 Missense_Mutation p.T180A 0.14 tolerated(0.51) benign(0.006) TCGA-G9-6378-01 X 151900633 151900633 G A MAGEA12 Silent p.A56A 0.27 TCGA-G9-6378-01 X 37285150 37285150 G A PRRG1 Missense_Mutation p.G23E 0.11 tolerated(1) benign(0.034) TCGA-G9-6378-01 X 38664272 38664272 G A MID1IP1 Missense_Mutation p.V25M 0.09 deleterious(0) probably_damaging(1) TCGA-G9-6379-01 10 102762582 102762582 G A LZTS2 Missense_Mutation p.R96Q 0.21 tolerated(0.7) benign(0.001) TCGA-G9-6379-01 11 118949955 118949955 C A VPS11 Silent p.R794R 0.17 TCGA-G9-6379-01 11 55419263 55419263 C A OR4S2 Missense_Mutation p.A295E 0.05 deleterious(0) benign(0.282) TCGA-G9-6379-01 11 57995386 57995386 C T OR10Q1 3'UTR 0.16 TCGA-G9-6379-01 11 58978841 58978841 C T MPEG1 Missense_Mutation p.G500S 0.09 tolerated(0.34) benign(0.015) TCGA-G9-6379-01 11 61249309 61249309 G A PPP1R32 Missense_Mutation p.V10I 0.09 tolerated(0.11) benign(0.283) TCGA-G9-6379-01 12 130830316 130830316 G A PIWIL1 Missense_Mutation p.G70E 0.18 deleterious(0.03) probably_damaging(0.991) TCGA-G9-6379-01 12 49485161 49485161 C T DHH Silent p.E105E 0.12 TCGA-G9-6379-01 12 53777378 53777378 C G SP1 Silent p.G549G 0.17 TCGA-G9-6379-01 12 54403269 54403269 C A HOXC8 Silent p.I67I 0.06 TCGA-G9-6379-01 13 37678967 37678967 G - CSNK1A1L Frame_Shift_Del p.L143* 0.07 TCGA-G9-6379-01 14 63453881 63453881 G T KCNH5 Missense_Mutation p.T153K 0.14 tolerated(0.06) possibly_damaging(0.617) TCGA-G9-6379-01 16 20808158 20808158 T C ERI2 3'UTR 0.19 TCGA-G9-6379-01 17 40475084 40475084 C G STAT3 Missense_Mutation p.R609T 0.16 deleterious(0) probably_damaging(0.966) TCGA-G9-6379-01 17 62018760 62018760 C T SCN4A Missense_Mutation p.D1628N 0.14 deleterious(0) possibly_damaging(0.865) TCGA-G9-6379-01 18 43205697 43205697 T A SLC14A2 Missense_Mutation p.L67H 0.21 tolerated(0.11) benign(0.212) TCGA-G9-6379-01 18 61160285 61160285 T C SERPINB5 Missense_Mutation p.F175S 0.22 deleterious(0) probably_damaging(1) TCGA-G9-6379-01 19 38959779 38959779 C T RYR1 Silent p.D1185D 0.08 TCGA-G9-6379-01 19 45317538 45317538 G A BCAM Missense_Mutation p.R305H 0.07 tolerated(0.09) benign(0.086) TCGA-G9-6379-01 1 173506159 173506159 C T SLC9C2 Missense_Mutation p.R526H 0.12 tolerated(0.32) benign(0.001) TCGA-G9-6379-01 1 54360027 54360027 G A DIO1 Silent p.T48T 0.17 TCGA-G9-6379-01 2 47278910 47278910 C T TTC7A Silent p.A681A 0.21 TCGA-G9-6379-01 3 142681387 142681387 G A PAQR9 Silent p.F264F 0.04 TCGA-G9-6379-01 3 38924806 38924806 C T SCN11A Missense_Mutation p.R1046Q 0.08 deleterious(0) probably_damaging(1) TCGA-G9-6379-01 4 145629382 145629382 C A HHIP Missense_Mutation p.S407Y 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-G9-6379-01 5 114611297 114611297 T A CCDC112 Missense_Mutation p.E178D 0.11 tolerated(0.06) benign(0.057) TCGA-G9-6379-01 5 160047852 160047852 T C ATP10B Missense_Mutation p.T640A 0.06 tolerated(0.38) benign(0.02) TCGA-G9-6379-01 6 111654323 111654324 - A REV3L Intron 0.14 TCGA-G9-6379-01 7 119914660 119914660 C T KCND2 5'UTR 0.03 TCGA-G9-6379-01 7 132169640 132169640 T C PLXNA4 Intron 0.17 TCGA-G9-6379-01 7 53103623 53103623 G A POM121L12 Missense_Mutation p.A87T 0.28 tolerated(0.59) benign(0.01) TCGA-G9-6379-01 7 87225083 87225083 A T ABCB1 Missense_Mutation p.M39K 0.11 deleterious(0.01) benign(0.001) TCGA-G9-6379-01 8 10480545 10480545 C T RP1L1 Missense_Mutation p.R56H 0.12 probably_damaging(1) TCGA-G9-6379-01 Y 6114373 6114373 G A TSPY2 Missense_Mutation p.V22M 0.34 deleterious(0.03) possibly_damaging(0.666) TCGA-G9-6384-01 10 115372082 115372082 C A NRAP Missense_Mutation p.D1137Y 0.14 deleterious(0) possibly_damaging(0.729) TCGA-G9-6384-01 10 135012126 135012126 G T KNDC1 Missense_Mutation p.G705V 0.16 tolerated(0.35) benign(0.42) TCGA-G9-6384-01 10 26534847 26534847 C A GAD2 Intron 0.20 TCGA-G9-6384-01 11 65268722 65268723 AT - MALAT1 RNA 0.19 TCGA-G9-6384-01 11 8729383 8729383 G C ST5 Missense_Mutation p.R791G 0.12 deleterious(0.04) benign(0.017) TCGA-G9-6384-01 15 74917313 74917313 A G CLK3 Missense_Mutation p.I350V 0.14 tolerated(0.13) possibly_damaging(0.717) TCGA-G9-6384-01 15 79382656 79382656 G A RASGRF1 Missense_Mutation p.P62L 0.25 deleterious(0) possibly_damaging(0.899) TCGA-G9-6384-01 16 27585275 27585275 G T KIAA0556 Nonsense_Mutation p.E21* 0.30 TCGA-G9-6384-01 16 30620889 30620889 A C ZNF689 Silent p.A92A 0.22 TCGA-G9-6384-01 19 375680 375680 C T THEG Silent p.E97E 0.17 TCGA-G9-6384-01 1 118554950 118554950 C G SPAG17 Missense_Mutation p.D1445H 0.21 deleterious(0) probably_damaging(0.999) TCGA-G9-6384-01 1 158299693 158299693 G A CD1B Nonsense_Mutation p.R186* 0.15 TCGA-G9-6384-01 1 170688957 170688957 G A PRRX1 Missense_Mutation p.R111H 0.25 deleterious(0) probably_damaging(0.996) TCGA-G9-6384-01 1 3697704 3697704 G C LRRC47 Missense_Mutation p.P567R 0.20 deleterious(0) probably_damaging(1) TCGA-G9-6384-01 21 30411465 30411465 A G USP16 Missense_Mutation p.Q284R 0.08 deleterious(0) probably_damaging(0.999) TCGA-G9-6384-01 22 17073169 17073169 C A CCT8L2 Missense_Mutation p.R91L 0.06 tolerated(0.31) probably_damaging(0.954) TCGA-G9-6384-01 2 131520858 131520858 C T AMER3 Missense_Mutation p.P405S 0.23 deleterious(0.03) possibly_damaging(0.589) TCGA-G9-6384-01 3 86114827 86114827 T G CADM2 Missense_Mutation p.F381C 0.08 deleterious(0) probably_damaging(1) TCGA-G9-6384-01 5 140209661 140209661 C T PCDHA6 Missense_Mutation p.T662M 0.24 deleterious_low_confidence(0.03) probably_damaging(0.972) TCGA-G9-6384-01 5 140751900 140751900 C T PCDHGB3 Missense_Mutation p.R647C 0.12 deleterious(0.03) benign(0.212) TCGA-G9-6384-01 5 160033839 160033839 C A ATP10B Silent p.T1031T 0.21 TCGA-G9-6384-01 5 99871330 99871330 C T FAM174A Silent p.V32V 0.09 TCGA-G9-6384-01 6 108042009 108042009 G A SCML4 Missense_Mutation p.R291C 0.04 deleterious(0.05) benign(0.003) TCGA-G9-6384-01 7 154862620 154862620 C T HTR5A Missense_Mutation p.P4L 0.16 deleterious_low_confidence(0) benign(0.002) TCGA-G9-6384-01 7 82763829 82763829 C G PCLO Missense_Mutation p.E1013Q 0.24 unknown(0) TCGA-G9-6384-01 8 144643541 144643541 C T GSDMD Silent p.D228D 0.17 TCGA-G9-6384-01 9 78790078 78790082 AAGAG GGATGAT PCSK5 Intron 0.12 TCGA-G9-6384-01 X 130220378 130220378 C T ARHGAP36 Missense_Mutation p.R453C 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-G9-6385-01 11 6432291 6432291 G A APBB1 Missense_Mutation p.A96V 0.03 tolerated(0.33) benign(0.017) TCGA-G9-6385-01 12 71977709 71977709 T C LGR5 Missense_Mutation p.I640T 0.26 tolerated(1) benign(0.001) TCGA-G9-6385-01 19 15131324 15131324 C A CCDC105 Missense_Mutation p.Q243K 0.09 tolerated(0.14) probably_damaging(0.989) TCGA-G9-6385-01 19 52793389 52793389 G A ZNF766 Silent p.Q115Q 0.05 TCGA-G9-6385-01 1 10363477 10363477 A T KIF1B Intron 0.07 TCGA-G9-6385-01 1 152326999 152326999 C T FLG2 Missense_Mutation p.G1088D 0.03 unknown(0) TCGA-G9-6385-01 1 202092707 202092707 G A GPR37L1 Missense_Mutation p.V206M 0.04 deleterious(0) probably_damaging(0.998) TCGA-G9-6385-01 1 228481211 228481211 C T OBSCN Silent p.D4104D 0.04 TCGA-G9-6385-01 1 248685655 248685655 G C OR2G6 Missense_Mutation p.K236N 0.20 deleterious(0) probably_damaging(0.998) TCGA-G9-6385-01 20 31873852 31873852 C A BPIFB1 5'UTR 0.09 TCGA-G9-6385-01 5 140798766 140798766 A G PCDHGB7 Missense_Mutation p.D447G 0.13 deleterious(0) possibly_damaging(0.802) TCGA-G9-6385-01 6 32163814 32163814 C T NOTCH4 Silent p.A1804A 0.21 TCGA-G9-6385-01 6 43251485 43251485 C G TTBK1 Missense_Mutation p.R1003G 0.07 benign(0) TCGA-G9-6385-01 8 56686143 56686143 G C TGS1 5'UTR 0.20 TCGA-G9-6385-01 9 33056918 33056918 C T SMU1 Silent p.R304R 0.07 TCGA-G9-6494-01 10 44104060 44104060 A T ZNF485 Splice_Site p.X9_splice 0.29 TCGA-G9-6494-01 10 50736488 50736492 ATCTA - ERCC6-PGBD3 Frame_Shift_Del p.L208Pfs*57 0.19 TCGA-G9-6494-01 11 26620449 26620449 G T ANO3 Missense_Mutation p.E525D 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-G9-6494-01 11 62384117 62384117 G A B3GAT3 Missense_Mutation p.A257V 0.05 deleterious(0) probably_damaging(0.978) TCGA-G9-6494-01 11 7021497 7021497 G C ZNF214 Missense_Mutation p.P473A 0.18 tolerated(0.25) benign(0) TCGA-G9-6494-01 12 113822716 113822716 C G PLBD2 Silent p.P393P 0.06 TCGA-G9-6494-01 14 105349541 105349541 G A CEP170B Silent p.T249T 0.16 TCGA-G9-6494-01 14 81422160 81422160 C T TSHR Missense_Mutation p.R46C 0.24 tolerated(0.11) benign(0.362) TCGA-G9-6494-01 15 65687537 65687537 G A IGDCC4 Missense_Mutation p.R491W 0.30 deleterious(0.01) possibly_damaging(0.901) TCGA-G9-6494-01 16 86612373 86612373 C T FOXL1 Missense_Mutation p.S15L 0.18 deleterious(0.01) possibly_damaging(0.643) TCGA-G9-6494-01 17 10356642 10356642 T G MYH4 Missense_Mutation p.K980Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-G9-6494-01 17 80129645 80129645 T C CCDC57 Missense_Mutation p.D605G 0.05 tolerated(0.11) benign(0.022) TCGA-G9-6494-01 17 9739734 9739734 T A GLP2R Missense_Mutation p.H108Q 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-G9-6494-01 19 12501649 12501649 T A ZNF799 Silent p.V521V 0.06 TCGA-G9-6494-01 19 51379825 51379826 AA - KLK2 Frame_Shift_Del p.N102Yfs*10 0.31 TCGA-G9-6494-01 19 9064360 9064360 C T MUC16 Missense_Mutation p.V7696M 0.22 unknown(0) TCGA-G9-6494-01 19 964329 964329 G A ARID3A Missense_Mutation p.G283D 0.22 deleterious(0) probably_damaging(1) TCGA-G9-6494-01 1 173941766 173941767 - TA RC3H1 Splice_Site p.X368_splice 0.12 TCGA-G9-6494-01 1 200960075 200960075 G T KIF21B Missense_Mutation p.A886E 0.06 tolerated(0.05) benign(0.003) TCGA-G9-6494-01 1 32150183 32150183 G A COL16A1 Missense_Mutation p.R701W 0.12 unknown(0) TCGA-G9-6494-01 1 91781959 91781959 C A HFM1 Nonsense_Mutation p.E963* 0.07 TCGA-G9-6494-01 20 30363692 30363692 G T TPX2 Nonsense_Mutation p.E211* 0.31 TCGA-G9-6494-01 20 36974956 36974956 C T LBP Silent p.L13L 0.08 TCGA-G9-6494-01 20 43257807 43257807 C A ADA Missense_Mutation p.R33S 0.16 deleterious(0) benign(0.081) TCGA-G9-6494-01 22 32007282 32007282 G - SFI1 Frame_Shift_Del p.K804Rfs*97 0.32 TCGA-G9-6494-01 2 45233549 45233549 C T SIX2 Silent p.S212S 0.26 TCGA-G9-6494-01 2 85925771 85925771 C T GNLY 3'UTR 0.25 TCGA-G9-6494-01 3 118621295 118621295 C T IGSF11 3'UTR 0.09 TCGA-G9-6494-01 3 149686232 149686232 C A PFN2 Missense_Mutation p.V80F 0.26 deleterious(0.01) benign(0.305) TCGA-G9-6494-01 4 79786791 79786791 C T BMP2K Missense_Mutation p.T383I 0.17 deleterious(0.02) benign(0.122) TCGA-G9-6494-01 4 95220625 95220625 G C HPGDS 3'UTR 0.05 TCGA-G9-6494-01 5 54642959 54642959 A C SKIV2L2 Missense_Mutation p.L409F 0.28 tolerated(0.09) benign(0.234) TCGA-G9-6494-01 6 111498553 111498553 C T SLC16A10 Silent p.G209G 0.26 TCGA-G9-6494-01 6 138197133 138197133 A G TNFAIP3 Missense_Mutation p.D212G 0.21 tolerated(0.12) probably_damaging(1) TCGA-G9-6494-01 6 163983069 163983069 A G QKI Missense_Mutation p.N201S 0.31 deleterious(0) benign(0.016) TCGA-G9-6494-01 6 83905528 83905528 A T RWDD2A Missense_Mutation p.K139M 0.38 deleterious(0.03) possibly_damaging(0.615) TCGA-G9-6494-01 7 27283058 27283058 G A EVX1 Missense_Mutation p.E137K 0.09 tolerated(0.47) benign(0.311) TCGA-G9-6494-01 7 38305254 38305254 G A TRGC1 Silent p.S9S 0.28 TCGA-G9-6494-01 Y 4966872 4966872 C T PCDH11Y Missense_Mutation p.T418M 0.38 deleterious(0.04) benign(0.094) TCGA-G9-6496-01 10 129901213 129901213 C G MKI67 Missense_Mutation p.R2964P 0.29 deleterious(0) probably_damaging(0.998) TCGA-G9-6496-01 10 70446226 70446226 G A TET1 Silent p.K1722K 0.41 TCGA-G9-6496-01 11 4661689 4661690 CT - OR51D1 Frame_Shift_Del p.F226Hfs*50 0.34 TCGA-G9-6496-01 12 44189532 44189532 C A TWF1 Missense_Mutation p.L310F 0.40 deleterious(0) probably_damaging(0.958) TCGA-G9-6496-01 13 113735569 113735569 G T MCF2L Silent p.V617V 0.27 TCGA-G9-6496-01 13 20049751 20049751 C A TPTE2 Missense_Mutation p.K64N 0.35 deleterious(0) possibly_damaging(0.843) TCGA-G9-6496-01 14 104205266 104205268 GAC - PPP1R13B In_Frame_Del p.S896del 0.42 TCGA-G9-6496-01 14 106208715 106208715 T G IGHG1 Missense_Mutation p.K101N 0.41 tolerated(0.21) benign(0.014) TCGA-G9-6496-01 16 58313805 58313805 G A CCDC113 3'UTR 0.83 TCGA-G9-6496-01 17 3980274 3980274 T G ZZEF1 Missense_Mutation p.Q1000P 0.31 deleterious(0.04) probably_damaging(0.976) TCGA-G9-6496-01 17 7250419 7250419 C T ACAP1 Missense_Mutation p.P401S 0.15 tolerated(0.73) benign(0) TCGA-G9-6496-01 19 40698519 40698519 A G MAP3K10 Missense_Mutation p.H194R 0.38 tolerated(0.1) benign(0.018) TCGA-G9-6496-01 19 40832339 40832339 C T C19orf47 Missense_Mutation p.R202Q 0.29 deleterious(0.01) possibly_damaging(0.897) TCGA-G9-6496-01 19 9061392 9061392 G C MUC16 Missense_Mutation p.T8685R 0.42 unknown(0) TCGA-G9-6496-01 1 152186569 152186569 G A HRNR Silent p.H2512H 0.29 TCGA-G9-6496-01 1 161334829 161334829 A G C1orf192 Missense_Mutation p.S154P 0.32 tolerated_low_confidence(0.06) benign(0.004) TCGA-G9-6496-01 1 161494903 161494903 T G HSPA6 Missense_Mutation p.F152C 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-G9-6496-01 1 208200500 208200500 T C PLXNA2 3'UTR 0.08 TCGA-G9-6496-01 1 236156998 236156998 C T NID1 Missense_Mutation p.R901H 0.29 deleterious(0.01) possibly_damaging(0.896) TCGA-G9-6496-01 1 47149017 47149017 C T EFCAB14 Missense_Mutation p.A423T 0.34 tolerated(0.45) benign(0.005) TCGA-G9-6496-01 1 99422183 99422183 G A LPPR5 Nonsense_Mutation p.R118* 0.48 TCGA-G9-6496-01 20 1600530 1600530 G A SIRPB1 Silent p.L21L 0.39 TCGA-G9-6496-01 22 20457784 20457784 G A RIMBP3 Missense_Mutation p.S1173F 0.29 deleterious(0) probably_damaging(1) TCGA-G9-6496-01 2 211541794 211541794 C T CPS1 Silent p.V1452V 0.35 TCGA-G9-6496-01 2 214794778 214794778 C T SPAG16 Missense_Mutation p.R437C 0.50 deleterious(0.02) possibly_damaging(0.72) TCGA-G9-6496-01 2 68408039 68408039 G C PPP3R1 3'UTR 0.29 TCGA-G9-6496-01 2 85553644 85553644 T C TGOLN2 Missense_Mutation p.H404R 0.39 deleterious(0) possibly_damaging(0.702) TCGA-G9-6496-01 2 89475970 89475970 G C IGKV2-24 Missense_Mutation p.P68A 0.02 tolerated(0.64) benign(0.001) TCGA-G9-6496-01 3 123451902 123451902 G C MYLK Missense_Mutation p.P453A 0.18 tolerated(0.12) benign(0.069) TCGA-G9-6496-01 3 129188218 129188218 C G IFT122 Missense_Mutation p.D309E 0.43 tolerated(0.1) possibly_damaging(0.873) TCGA-G9-6496-01 3 13663379 13663379 G T FBLN2 Missense_Mutation p.D754Y 0.29 deleterious(0.04) possibly_damaging(0.535) TCGA-G9-6496-01 3 195591016 195591016 T A TNK2 3'UTR 0.32 TCGA-G9-6496-01 3 46759103 46759103 G A PRSS50 Missense_Mutation p.P44L 0.41 tolerated(0.17) benign(0.044) TCGA-G9-6496-01 4 100237249 100237249 G T ADH1B Missense_Mutation p.Q125K 0.38 tolerated(0.19) benign(0.009) TCGA-G9-6496-01 4 956320 956320 T C DGKQ Missense_Mutation p.E706G 0.25 deleterious(0) probably_damaging(1) TCGA-G9-6496-01 5 126771182 126771182 G C MEGF10 Splice_Site p.X702_splice 0.44 TCGA-G9-6496-01 6 112441551 112441551 T G LAMA4 Missense_Mutation p.N1534H 0.54 deleterious(0) probably_damaging(1) TCGA-G9-6496-01 6 116599606 116599606 T A TSPYL1 3'UTR 0.86 TCGA-G9-6496-01 7 101845118 101845118 C T CUX1 Silent p.G858G 0.06 TCGA-G9-6496-01 7 117386131 117386131 A T CTTNBP2 Missense_Mutation p.I1124N 0.33 deleterious(0) possibly_damaging(0.853) TCGA-G9-6496-01 7 141952406 141952406 A C PRSS58 Silent p.T154T 0.04 TCGA-G9-6496-01 7 76029805 76029805 G A SRCRB4D Silent p.D91D 0.43 TCGA-G9-6496-01 7 87138593 87138593 T C ABCB1 Missense_Mutation p.N1163D 0.11 tolerated(0.73) benign(0.002) TCGA-G9-6496-01 8 142222492 142222492 C T SLC45A4 Missense_Mutation p.G651D 0.34 deleterious(0.02) probably_damaging(1) TCGA-G9-6496-01 8 143603449 143603449 C T BAI1 Missense_Mutation p.R1050C 0.27 deleterious(0) benign(0.001) TCGA-G9-6496-01 9 131107632 131107632 C G SLC27A4 Silent p.A120A 0.33 TCGA-G9-6496-01 9 87285613 87285613 C T NTRK2 5'UTR 0.08 TCGA-G9-6496-01 X 73066388 73066388 G T XIST RNA 0.80 TCGA-G9-6496-01 X 76891438 76891438 A G ATRX Missense_Mutation p.M1556T 0.78 possibly_damaging(0.497) TCGA-G9-6498-01 10 122646216 122646219 AGAA - WDR11 Frame_Shift_Del p.E664Vfs*34 0.11 TCGA-G9-6498-01 10 124273783 124273783 G A HTRA1 Missense_Mutation p.V451I 0.27 tolerated(0.07) benign(0.006) TCGA-G9-6498-01 10 48389894 48389894 C G RBP3 Silent p.G328G 0.17 TCGA-G9-6498-01 10 50530906 50530906 G A C10orf71 Missense_Mutation p.V106I 0.06 tolerated(0.09) probably_damaging(0.998) TCGA-G9-6498-01 11 123810394 123810394 G A OR4D5 Missense_Mutation p.R24Q 0.16 tolerated(1) benign(0.004) TCGA-G9-6498-01 11 17190738 17190738 G A PIK3C2A Missense_Mutation p.P184L 0.29 deleterious_low_confidence(0) benign(0.305) TCGA-G9-6498-01 11 4130909 4130909 C T RRM1 Silent p.F141F 0.24 TCGA-G9-6498-01 11 47198145 47198145 C T ARFGAP2 Missense_Mutation p.S38N 0.10 deleterious(0) probably_damaging(0.999) TCGA-G9-6498-01 11 51515372 51515372 G A OR4C46 Missense_Mutation p.V31I 0.16 tolerated_low_confidence(0.66) benign(0.005) TCGA-G9-6498-01 11 76247049 76247049 T G C11orf30 Missense_Mutation p.S769A 0.35 tolerated(0.06) possibly_damaging(0.661) TCGA-G9-6498-01 12 22796887 22796887 G A ETNK1 Missense_Mutation p.G205E 0.18 deleterious(0) probably_damaging(0.992) TCGA-G9-6498-01 14 29237113 29237113 T C FOXG1 Missense_Mutation p.F210L 0.23 deleterious(0.03) probably_damaging(0.992) TCGA-G9-6498-01 14 70477514 70477514 A G SMOC1 Silent p.E236E 0.25 TCGA-G9-6498-01 16 48139193 48139193 C T ABCC12 Missense_Mutation p.A844T 0.44 tolerated(0.29) benign(0.026) TCGA-G9-6498-01 17 48685232 48685232 G A CACNA1G Silent p.S1519S 0.13 TCGA-G9-6498-01 19 51227212 51227212 T G CLEC11A Silent p.P66P 0.27 TCGA-G9-6498-01 19 51451965 51451965 A G KLK5 Silent p.D219D 0.13 TCGA-G9-6498-01 1 159174691 159174691 G A DARC 5'Flank 0.18 TCGA-G9-6498-01 1 215960060 215960060 C A USH2A Missense_Mutation p.A3447S 0.06 benign(0.007) TCGA-G9-6498-01 2 211341083 211341083 T C LANCL1 Missense_Mutation p.Y13C 0.30 deleterious(0) possibly_damaging(0.669) TCGA-G9-6498-01 3 138426080 138426080 T C PIK3CB Missense_Mutation p.Y484C 0.21 tolerated(0.05) probably_damaging(0.932) TCGA-G9-6498-01 4 3319513 3319513 C T RGS12 Missense_Mutation p.P539L 0.19 deleterious(0) possibly_damaging(0.859) TCGA-G9-6498-01 5 140176001 140176001 G A PCDHA2 Silent p.A484A 0.16 TCGA-G9-6498-01 6 121768604 121768604 C T GJA1 Missense_Mutation p.T204M 0.08 deleterious(0) probably_damaging(1) TCGA-G9-6498-01 6 136913365 136913365 G T MAP3K5 Silent p.I1057I 0.30 TCGA-G9-6498-01 6 30080642 30080642 C T TRIM31 5'UTR 0.34 TCGA-G9-6498-01 6 30104886 30104886 G A TRIM40 Missense_Mutation p.V25M 0.27 deleterious(0.05) benign(0.379) TCGA-G9-6498-01 7 140481402 140481402 C G BRAF Missense_Mutation p.G469A 0.09 deleterious(0.01) possibly_damaging(0.773) TCGA-G9-6498-01 7 30961798 30961799 - C AQP1 Frame_Shift_Ins p.L170Pfs*16 0.30 TCGA-G9-6499-01 11 123813655 123813655 C A OR6T1 Silent p.V297V 0.08 TCGA-G9-6499-01 11 66083697 66083697 C G CD248 Missense_Mutation p.G268R 0.14 deleterious(0) probably_damaging(0.999) TCGA-G9-6499-01 12 124212379 124212379 A C ATP6V0A2 Missense_Mutation p.M191L 0.27 tolerated(0.77) benign(0.073) TCGA-G9-6499-01 12 46246100 46246100 T - ARID2 Frame_Shift_Del p.L1399* 0.17 TCGA-G9-6499-01 12 56119956 56119956 A - CD63 Frame_Shift_Del p.N172Kfs*28 0.11 TCGA-G9-6499-01 14 100792465 100792465 C T SLC25A47 Intron 0.14 TCGA-G9-6499-01 14 39746096 39746097 - AA CTAGE5 Intron 0.10 TCGA-G9-6499-01 15 101983834 101983834 T C PCSK6 Missense_Mutation p.Y109C 0.13 tolerated(0.08) possibly_damaging(0.749) TCGA-G9-6499-01 15 41319812 41319813 - A INO80 Frame_Shift_Ins p.L1010Ffs*19 0.18 TCGA-G9-6499-01 15 62204152 62204152 G C VPS13C Missense_Mutation p.L2868V 0.18 deleterious(0.02) possibly_damaging(0.641) TCGA-G9-6499-01 15 64737299 64737299 C G TRIP4 Missense_Mutation p.P557R 0.19 tolerated(0.47) benign(0.288) TCGA-G9-6499-01 15 67073658 67073658 G T SMAD6 Missense_Mutation p.V426F 0.18 deleterious(0.02) possibly_damaging(0.515) TCGA-G9-6499-01 16 67978717 67978717 C T SLC12A4 3'UTR 0.25 TCGA-G9-6499-01 16 85936654 85936654 A C IRF8 Silent p.R11R 0.14 TCGA-G9-6499-01 17 38638448 38638448 A T TNS4 Silent p.S535S 0.07 TCGA-G9-6499-01 17 7330826 7330826 G A C17orf74 3'UTR 0.09 TCGA-G9-6499-01 17 73725380 73725380 T G ITGB4 Missense_Mutation p.F201V 0.13 deleterious(0) possibly_damaging(0.889) TCGA-G9-6499-01 17 7578404 7578404 A G TP53 Missense_Mutation p.C176R 0.27 deleterious(0) probably_damaging(0.991) TCGA-G9-6499-01 18 12678245 12678245 T C CEP76 Missense_Mutation p.I496V 0.24 tolerated(0.32) benign(0.019) TCGA-G9-6499-01 19 16902377 16902377 T G NWD1 Missense_Mutation p.S1053A 0.08 tolerated(0.96) benign(0.013) TCGA-G9-6499-01 19 38056280 38056280 C T ZNF571 Silent p.L350L 0.16 TCGA-G9-6499-01 19 55106382 55106382 C T LILRA1 Missense_Mutation p.S108L 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-G9-6499-01 1 155240637 155240637 C T CLK2 Silent p.R44R 0.07 TCGA-G9-6499-01 1 156937915 156937915 G A ARHGEF11 Missense_Mutation p.S276L 0.23 tolerated(0.66) benign(0.009) TCGA-G9-6499-01 1 226059717 226059717 G A TMEM63A Silent p.S101S 0.15 TCGA-G9-6499-01 1 75708580 75708580 C T SLC44A5 Silent p.K154K 0.08 TCGA-G9-6499-01 20 42355354 42355354 G A GTSF1L 5'UTR 0.17 TCGA-G9-6499-01 20 44258409 44258409 G C WFDC10A 5'UTR 0.19 TCGA-G9-6499-01 21 22782676 22782676 G A NCAM2 Silent p.S426S 0.27 TCGA-G9-6499-01 22 30221628 30221628 C T ASCC2 Missense_Mutation p.D75N 0.09 tolerated(0.16) benign(0.041) TCGA-G9-6499-01 22 50658944 50658944 G C TUBGCP6 Missense_Mutation p.L1282V 0.17 tolerated(0.62) benign(0.159) TCGA-G9-6499-01 2 28550226 28550226 C G BRE Missense_Mutation p.Q392E 0.13 benign(0) TCGA-G9-6499-01 3 10145972 10145972 A G FANCD2OS Missense_Mutation p.Y163H 0.30 deleterious(0) probably_damaging(0.994) TCGA-G9-6499-01 3 14561979 14561979 C G GRIP2 RNA 0.17 TCGA-G9-6499-01 3 160219854 160219854 C A KPNA4 3'UTR 0.18 TCGA-G9-6499-01 4 158254022 158254022 C T GRIA2 Missense_Mutation p.R312C 0.21 deleterious(0.01) possibly_damaging(0.816) TCGA-G9-6499-01 5 140256229 140256229 C T PCDHA12 Missense_Mutation p.P391L 0.13 deleterious_low_confidence(0.03) benign(0.262) TCGA-G9-6499-01 5 14508079 14508079 T C TRIO Missense_Mutation p.Y2948H 0.12 unknown(0) TCGA-G9-6499-01 5 155935636 155935636 C G SGCD Missense_Mutation p.T73R 0.21 tolerated(0.11) probably_damaging(0.972) TCGA-G9-6499-01 6 89888605 89888605 T G GABRR1 Silent p.R442R 0.11 TCGA-G9-6499-01 7 21942672 21942672 C T CDCA7L Missense_Mutation p.G420S 0.09 deleterious(0) probably_damaging(1) TCGA-G9-6499-01 7 40132728 40132728 C G CDK13 Missense_Mutation p.Q1194E 0.16 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-G9-6499-01 7 66489943 66489943 G A TYW1 Silent p.Q306Q 0.05 TCGA-G9-6499-01 7 99720144 99720144 C T CNPY4 Missense_Mutation p.R96W 0.28 deleterious(0) probably_damaging(0.939) TCGA-G9-6499-01 8 144620720 144620720 G T ZC3H3 Missense_Mutation p.P273T 0.11 tolerated(0.07) benign(0.293) TCGA-G9-6499-01 9 136405789 136405789 T A ADAMTSL2 Missense_Mutation p.L161H 0.25 deleterious(0) probably_damaging(0.995) TCGA-G9-6499-01 X 149937447 149937447 G A CD99L2 3'UTR 0.15 TCGA-G9-6499-01 X 38525456 38525456 T - TSPAN7 Frame_Shift_Del p.S55Pfs*34 0.29 TCGA-G9-7509-01 10 50724106 50724106 T C ERCC6-PGBD3 Missense_Mutation p.N820S 0.22 deleterious_low_confidence(0.01) unknown(0) TCGA-G9-7509-01 11 55761635 55761635 A T OR5F1 Missense_Mutation p.F156Y 0.10 deleterious(0) benign(0.003) TCGA-G9-7509-01 11 92495335 92495335 C T FAT3 Missense_Mutation p.T1328M 0.09 probably_damaging(0.999) TCGA-G9-7509-01 12 8325217 8325217 G A ZNF705A 5'UTR 0.05 TCGA-G9-7509-01 13 46287491 46287491 G A SPERT Missense_Mutation p.D111N 0.12 deleterious(0) probably_damaging(0.987) TCGA-G9-7509-01 14 95030303 95030303 G A SERPINA4 Missense_Mutation p.V162I 0.32 tolerated(0.06) benign(0.003) TCGA-G9-7509-01 17 10352207 10352218 CGAGAGCTATGC - MYH4 In_Frame_Del p.C1443_D1447delinsY 0.17 TCGA-G9-7509-01 17 39643395 39643395 C T KRT36 Missense_Mutation p.E339K 0.09 deleterious(0) probably_damaging(0.996) TCGA-G9-7509-01 19 49261406 49261406 G A FGF21 Missense_Mutation p.D187N 0.11 tolerated(0.07) benign(0.154) TCGA-G9-7509-01 19 5770982 5770982 G A CATSPERD Silent p.G554G 0.06 TCGA-G9-7509-01 1 155896893 155896893 A C KIAA0907 Splice_Site p.X173_splice 0.05 TCGA-G9-7509-01 1 180241031 180241031 G A LHX4 Missense_Mutation p.R223H 0.05 deleterious(0.02) probably_damaging(0.98) TCGA-G9-7509-01 1 237586430 237586430 G A RYR2 Missense_Mutation p.R296Q 0.07 probably_damaging(0.978) TCGA-G9-7509-01 1 6202222 6202222 G A CHD5 Missense_Mutation p.A801V 0.07 deleterious(0.03) possibly_damaging(0.708) TCGA-G9-7509-01 22 31854494 31854494 G T EIF4ENIF1 Missense_Mutation p.F310L 0.10 deleterious(0.03) probably_damaging(0.987) TCGA-G9-7509-01 2 11736314 11736314 T C GREB1 Missense_Mutation p.S635P 0.08 tolerated(0.2) possibly_damaging(0.854) TCGA-G9-7509-01 2 61492578 61492580 TGC - USP34 In_Frame_Del p.Q1911del 0.27 TCGA-G9-7509-01 3 21478535 21478535 T G ZNF385D Silent p.A200A 0.09 TCGA-G9-7509-01 3 45943240 45943240 G C CCR9 Silent p.V320V 0.29 TCGA-G9-7509-01 4 76522237 76522237 C T CDKL2 Missense_Mutation p.V402M 0.08 tolerated(0.2) benign(0.018) TCGA-G9-7509-01 6 146625931 146625931 C T GRM1 Missense_Mutation p.R379C 0.29 deleterious(0) probably_damaging(0.973) TCGA-G9-7509-01 6 26452501 26452501 C T BTN3A3 Silent p.G539G 0.09 TCGA-G9-7509-01 6 88854286 88854286 C T CNR1 Silent p.A236A 0.07 TCGA-G9-7509-01 7 121726065 121726065 C A AASS Splice_Site p.X728_splice 0.19 TCGA-G9-7509-01 7 130356540 130356540 T C TSGA13 Missense_Mutation p.T207A 0.18 tolerated(0.17) benign(0.388) TCGA-G9-7509-01 X 109416587 109416587 G C TMEM164 Missense_Mutation p.G268R 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-G9-7510-01 10 32304509 32304509 A G KIF5B Missense_Mutation p.V947A 0.04 tolerated(0.4) benign(0.003) TCGA-G9-7510-01 10 74714239 74714239 G A PLA2G12B Nonsense_Mutation p.R69* 0.06 TCGA-G9-7510-01 11 108225561 108225561 T G ATM Missense_Mutation p.V2937G 0.15 deleterious(0) probably_damaging(0.998) TCGA-G9-7510-01 12 10163422 10163422 C T CLEC12B Nonsense_Mutation p.R22* 0.14 TCGA-G9-7510-01 12 54674550 54674550 C T HNRNPA1 5'UTR 0.05 TCGA-G9-7510-01 14 33292152 33292152 C G AKAP6 Missense_Mutation p.I1711M 0.09 tolerated(0.06) benign(0.028) TCGA-G9-7510-01 15 42278134 42278134 G A PLA2G4E Missense_Mutation p.A702V 0.17 deleterious(0) probably_damaging(0.997) TCGA-G9-7510-01 15 75931970 75931970 G T IMP3 Missense_Mutation p.F180L 0.12 deleterious(0) possibly_damaging(0.847) TCGA-G9-7510-01 16 31485969 31485969 G A TGFB1I1 Missense_Mutation p.G202D 0.19 tolerated(0.27) probably_damaging(0.98) TCGA-G9-7510-01 16 71392748 71392748 C A CALB2 Missense_Mutation p.A18E 0.22 deleterious(0) probably_damaging(0.999) TCGA-G9-7510-01 16 81390408 81390408 A T GAN Missense_Mutation p.M218L 0.10 tolerated(0.53) benign(0.004) TCGA-G9-7510-01 16 87451328 87451328 C G ZCCHC14 Missense_Mutation p.G237A 0.18 tolerated(0.07) possibly_damaging(0.906) TCGA-G9-7510-01 17 43012683 43012683 G A KIF18B Missense_Mutation p.R139C 0.11 tolerated(0.08) probably_damaging(1) TCGA-G9-7510-01 17 46670614 46670614 T G HOXB5 Missense_Mutation p.E144A 0.11 tolerated(0.15) benign(0.084) TCGA-G9-7510-01 17 47696457 47696462 TGCCCG - SPOP In_Frame_Del p.R121_A122del 0.10 TCGA-G9-7510-01 17 685825 685825 G A RNMTL1 Silent p.E69E 0.15 TCGA-G9-7510-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.25 deleterious(0) probably_damaging(1) TCGA-G9-7510-01 17 7695606 7695606 C T DNAH2 Missense_Mutation p.R2364W 0.05 possibly_damaging(0.875) TCGA-G9-7510-01 19 42794902 42794902 C T CIC Missense_Mutation p.A661V 0.20 benign(0.011) TCGA-G9-7510-01 19 50204808 50204808 G A CPT1C Missense_Mutation p.V204I 0.10 tolerated(0.19) benign(0.004) TCGA-G9-7510-01 19 56372782 56372782 C A NLRP4 Missense_Mutation p.H629Q 0.12 tolerated(1) benign(0.008) TCGA-G9-7510-01 1 159860391 159860391 C T CCDC19 Missense_Mutation p.D51N 0.11 tolerated(0.32) benign(0.003) TCGA-G9-7510-01 1 247463779 247463779 G A ZNF496 3'UTR 0.19 TCGA-G9-7510-01 22 46685404 46685404 G A TTC38 Silent p.E396E 0.13 TCGA-G9-7510-01 2 165765267 165765267 C A SLC38A11 Silent p.V270V 0.05 TCGA-G9-7510-01 2 177036309 177036309 G A HOXD3 Silent p.T202T 0.12 TCGA-G9-7510-01 2 179456528 179456528 A G TTN Silent p.G20006G 0.16 TCGA-G9-7510-01 2 207509038 207509038 C T AC010731.4 RNA 0.19 TCGA-G9-7510-01 2 242794881 242794881 C T PDCD1 Missense_Mutation p.V110M 0.11 deleterious(0) possibly_damaging(0.845) TCGA-G9-7510-01 3 136729019 136729019 C T IL20RB Missense_Mutation p.T297M 0.13 tolerated(0.19) benign(0.007) TCGA-G9-7510-01 3 38168013 38168013 A G ACAA1 Missense_Mutation p.S269P 0.12 deleterious(0) probably_damaging(0.923) TCGA-G9-7510-01 4 115858527 115858527 G C NDST4 Missense_Mutation p.P452A 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-G9-7510-01 4 115898410 115898410 A G NDST4 Silent p.N333N 0.12 TCGA-G9-7510-01 4 115898411 115898411 T C NDST4 Missense_Mutation p.N333S 0.14 tolerated(0.34) benign(0.113) TCGA-G9-7510-01 5 43174661 43174661 A G ZNF131 Missense_Mutation p.N399S 0.13 tolerated(0.7) benign(0.016) TCGA-G9-7510-01 5 70860624 70860624 C T BDP1 Missense_Mutation p.A2596V 0.10 tolerated(0.24) benign(0.002) TCGA-G9-7510-01 6 37280704 37280704 G C TBC1D22B Silent p.V331V 0.08 TCGA-G9-7510-01 6 44218061 44218061 G A HSP90AB1 Missense_Mutation p.D228N 0.11 deleterious(0.01) possibly_damaging(0.679) TCGA-G9-7510-01 7 2583249 2583249 C T BRAT1 Missense_Mutation p.V260M 0.10 tolerated(0.07) benign(0.243) TCGA-G9-7510-01 8 143995679 143995679 C T CYP11B2 Splice_Site p.X318_splice 0.07 TCGA-G9-7510-01 8 19316028 19316028 C T CSGALNACT1 Missense_Mutation p.E254K 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-G9-7510-01 8 28574584 28574584 G A EXTL3 Silent p.P336P 0.08 TCGA-G9-7510-01 8 99440615 99440615 C T KCNS2 Silent p.D136D 0.05 TCGA-G9-7510-01 9 100080777 100080777 C T CCDC180 Missense_Mutation p.P375L 0.12 deleterious(0) probably_damaging(0.962) TCGA-G9-7510-01 9 103027138 103027138 G C INVS Missense_Mutation p.G500A 0.06 deleterious(0) probably_damaging(0.98) TCGA-G9-7510-01 X 53618049 53618049 T C HUWE1 Missense_Mutation p.M1336V 0.24 benign(0.069) TCGA-G9-7519-01 10 115971690 115971690 T C TDRD1 Missense_Mutation p.Y576H 0.06 deleterious(0) probably_damaging(0.934) TCGA-G9-7519-01 11 18763990 18763990 G A PTPN5 Missense_Mutation p.R182C 0.10 deleterious(0) probably_damaging(0.998) TCGA-G9-7519-01 12 10271128 10271128 C T CLEC7A Missense_Mutation p.V225M 0.08 tolerated(0.11) benign(0.027) TCGA-G9-7519-01 12 109834250 109834250 C G MYO1H Missense_Mutation p.L102V 0.09 deleterious(0) possibly_damaging(0.618) TCGA-G9-7519-01 12 53647321 53647321 G C MFSD5 Missense_Mutation p.R341S 0.14 tolerated(0.17) benign(0.327) TCGA-G9-7519-01 12 64536384 64536384 A G SRGAP1 Missense_Mutation p.K1064E 0.04 deleterious_low_confidence(0) benign(0.271) TCGA-G9-7519-01 15 25449418 25449418 C T SNORD115-20 5'Flank 0.15 TCGA-G9-7519-01 16 67266040 67266040 C T FHOD1 Missense_Mutation p.A702T 0.08 deleterious(0.03) probably_damaging(0.993) TCGA-G9-7519-01 17 39550306 39550306 G A KRT31 Missense_Mutation p.R405C 0.07 tolerated(0.08) possibly_damaging(0.725) TCGA-G9-7519-01 19 19379456 19379456 G A TM6SF2 Missense_Mutation p.R198C 0.06 tolerated(0.24) benign(0) TCGA-G9-7519-01 19 38794898 38794898 C T C19orf33 5'UTR 0.12 TCGA-G9-7519-01 19 51582742 51582742 G A KLK14 Nonsense_Mutation p.R160* 0.08 TCGA-G9-7519-01 19 55774039 55774039 C G HSPBP1 Missense_Mutation p.E339D 0.16 tolerated(0.2) possibly_damaging(0.755) TCGA-G9-7519-01 1 156647011 156647011 T C NES Missense_Mutation p.N16D 0.14 deleterious(0) probably_damaging(1) TCGA-G9-7519-01 1 158226847 158226847 C T CD1A Silent p.L292L 0.08 TCGA-G9-7519-01 1 26349846 26349846 C A EXTL1 Missense_Mutation p.R237S 0.25 tolerated(0.13) possibly_damaging(0.581) TCGA-G9-7519-01 1 36553404 36553404 G A TEKT2 Missense_Mutation p.A359T 0.10 tolerated(0.22) benign(0.11) TCGA-G9-7519-01 21 42821112 42821112 G A MX1 Missense_Mutation p.R441H 0.14 deleterious(0.03) probably_damaging(0.993) TCGA-G9-7519-01 22 26899663 26899663 G A TFIP11 Missense_Mutation p.P206L 0.32 deleterious(0) probably_damaging(0.974) TCGA-G9-7519-01 22 42033764 42033764 G A XRCC6 Missense_Mutation p.A248T 0.10 tolerated(0.13) benign(0.035) TCGA-G9-7519-01 2 24011409 24011409 T C ATAD2B Missense_Mutation p.M917V 0.20 tolerated(0.1) benign(0.006) TCGA-G9-7519-01 3 100497211 100497211 C T ABI3BP Missense_Mutation p.R706H 0.13 tolerated(0.32) probably_damaging(0.964) TCGA-G9-7519-01 3 27472797 27472798 AA - SLC4A7 Frame_Shift_Del p.L372Nfs*18 0.15 TCGA-G9-7519-01 4 113199473 113199473 T C TIFA Missense_Mutation p.I34V 0.26 deleterious(0.01) benign(0.188) TCGA-G9-7519-01 5 1338037 1338037 G A CLPTM1L Silent p.N220N 0.10 TCGA-G9-7519-01 5 167673770 167673770 C A TENM2 Silent p.V1942V 0.22 TCGA-G9-7519-01 6 118790379 118790379 G A CEP85L Missense_Mutation p.R707W 0.06 tolerated(0.21) benign(0) TCGA-G9-7519-01 6 133844247 133844247 C T EYA4 Missense_Mutation p.A557V 0.12 deleterious(0.02) possibly_damaging(0.679) TCGA-G9-7519-01 6 35438057 35438057 C T RPL10A Missense_Mutation p.L138F 0.18 deleterious(0.02) possibly_damaging(0.671) TCGA-G9-7519-01 7 144070332 144070332 A - ARHGEF5 Frame_Shift_Del p.E1366Rfs*3 0.08 TCGA-G9-7519-01 7 50367293 50367308 CCCGAGGACCTCTCCA - IKZF1 Frame_Shift_Del p.E35Pfs*20 0.15 TCGA-G9-7519-01 7 84628811 84628811 C T SEMA3D Missense_Mutation p.R760Q 0.25 tolerated(0.05) probably_damaging(0.997) TCGA-G9-7519-01 8 103291368 103291368 G A UBR5 Nonsense_Mutation p.R2024* 0.08 TCGA-G9-7519-01 8 97269341 97269341 T C MTERFD1 Silent p.E112E 0.04 TCGA-G9-7519-01 9 21186979 21186979 T C IFNA4 Silent p.R184R 0.03 TCGA-G9-7519-01 X 117707777 117707778 - T DOCK11 Frame_Shift_Ins p.I398Yfs*7 0.15 TCGA-G9-7519-01 X 54185950 54185950 A G FAM120C Missense_Mutation p.Y267H 0.06 tolerated(0.11) possibly_damaging(0.742) TCGA-G9-7519-01 X 70349255 70349255 G C MED12 Missense_Mutation p.V1223L 0.39 possibly_damaging(0.684) TCGA-G9-7519-01 X 71802410 71802410 C A PHKA1 Missense_Mutation p.E1112D 0.12 deleterious(0.01) probably_damaging(0.987) TCGA-G9-7519-01 X 76225829 76225829 C T MIR325 RNA 0.69 TCGA-G9-7521-01 10 104165237 104165237 A G PSD Missense_Mutation p.V731A 0.42 tolerated(0.6) benign(0.062) TCGA-G9-7521-01 11 108218046 108218046 T A ATM Missense_Mutation p.N2875K 0.25 deleterious(0) probably_damaging(1) TCGA-G9-7521-01 11 111249929 111249929 T C POU2AF1 5'UTR 0.14 TCGA-G9-7521-01 11 1215782 1215782 G A MUC5AC RNA 0.20 TCGA-G9-7521-01 11 12946524 12946524 G T TEAD1 Missense_Mutation p.E313D 0.12 tolerated(0.06) possibly_damaging(0.695) TCGA-G9-7521-01 11 65271006 65271006 C G MALAT1 RNA 0.11 TCGA-G9-7521-01 11 6806516 6806516 C T OR2AG1 Missense_Mutation p.A83V 0.11 tolerated(1) benign(0) TCGA-G9-7521-01 11 95523906 95523906 C A CEP57 Nonsense_Mutation p.S15* 0.18 TCGA-G9-7521-01 12 100551034 100551034 C G AC010203.1 RNA 0.36 TCGA-G9-7521-01 12 102470594 102470594 C G NUP37 Missense_Mutation p.D252H 0.18 deleterious(0) possibly_damaging(0.738) TCGA-G9-7521-01 12 109519153 109519153 T G USP30 Missense_Mutation p.F245L 0.29 deleterious(0.02) benign(0.314) TCGA-G9-7521-01 13 37427659 37427659 T C SMAD9 Missense_Mutation p.N386S 0.13 tolerated(0.07) benign(0.048) TCGA-G9-7521-01 13 42874546 42874546 C T AKAP11 Missense_Mutation p.A555V 0.21 deleterious(0) possibly_damaging(0.69) TCGA-G9-7521-01 16 3299469 3299469 G A MEFV Missense_Mutation p.R408W 0.31 tolerated(0.16) benign(0.006) TCGA-G9-7521-01 17 38175736 38175747 GGGGCTGCGCCA - MED24 3'UTR 0.17 TCGA-G9-7521-01 17 40986805 40986805 T G PSME3 Missense_Mutation p.I52S 0.23 tolerated(0.37) benign(0.334) TCGA-G9-7521-01 17 7577085 7577085 C T TP53 Missense_Mutation p.E285K 0.41 deleterious(0) probably_damaging(0.985) TCGA-G9-7521-01 17 76128481 76128481 C G TMC8 Missense_Mutation p.R114G 0.22 deleterious(0) probably_damaging(0.999) TCGA-G9-7521-01 18 65179168 65179168 G T DSEL Missense_Mutation p.T903N 0.23 tolerated(0.06) possibly_damaging(0.687) TCGA-G9-7521-01 18 8824763 8824763 G A SOGA2 Silent p.E1085E 0.28 TCGA-G9-7521-01 19 19356217 19356217 C T NCAN Silent p.N1196N 0.31 TCGA-G9-7521-01 19 367205 367205 G T THEG Missense_Mutation p.A258E 0.13 deleterious(0) probably_damaging(0.984) TCGA-G9-7521-01 19 37880057 37880057 G A ZNF527 Missense_Mutation p.R369H 0.24 tolerated(0.59) possibly_damaging(0.881) TCGA-G9-7521-01 19 58050081 58050081 C T ZNF549 Missense_Mutation p.T570I 0.16 tolerated(0.06) benign(0.022) TCGA-G9-7521-01 1 13940850 13940850 C T PDPN Silent p.I218I 0.33 TCGA-G9-7521-01 20 21378039 21378039 G T NKX2-4 5'UTR 0.50 TCGA-G9-7521-01 3 52412685 52412685 C A DNAH1 Silent p.T2422T 0.28 TCGA-G9-7521-01 5 176720972 176720972 T A NSD1 Silent p.S2201S 0.38 TCGA-G9-7521-01 6 163991767 163991767 T G QKI 3'UTR 0.15 TCGA-G9-7521-01 7 100210601 100210601 A T MOSPD3 Missense_Mutation p.T63S 0.24 tolerated(0.17) benign(0.077) TCGA-G9-7521-01 7 102727086 102727086 C T ARMC10 Missense_Mutation p.R135C 0.07 deleterious(0.01) probably_damaging(1) TCGA-G9-7521-01 7 73112192 73112192 C G WBSCR22 Silent p.G291G 0.16 TCGA-G9-7521-01 9 125582653 125582653 G A PDCL Missense_Mutation p.A206V 0.07 deleterious(0) probably_damaging(0.999) TCGA-G9-7522-01 11 62299581 62299581 C - AHNAK Frame_Shift_Del p.D770Mfs*2 0.12 TCGA-G9-7522-01 17 62041134 62041134 G A SCN4A Missense_Mutation p.H502Y 0.24 tolerated(0.22) benign(0.007) TCGA-G9-7522-01 1 198665988 198665988 C T PTPRC Missense_Mutation p.T83I 0.10 deleterious_low_confidence(0.01) benign(0.151) TCGA-G9-7522-01 20 31961946 31961946 G A CDK5RAP1 Missense_Mutation p.R394C 0.14 deleterious(0.05) benign(0.033) TCGA-G9-7522-01 22 39134911 39134911 C T SUN2 Nonsense_Mutation p.W603* 0.15 TCGA-G9-7522-01 3 128181921 128181921 C G DNAJB8 Silent p.L56L 0.09 TCGA-G9-7522-01 6 117245849 117245849 C T RFX6 Nonsense_Mutation p.R525* 0.17 TCGA-G9-7522-01 8 36641948 36641948 G A KCNU1 Missense_Mutation p.R7Q 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-G9-7522-01 8 8998648 8998648 A C PPP1R3B Missense_Mutation p.Y172D 0.11 deleterious(0.01) benign(0.139) TCGA-G9-7522-01 9 139912649 139912649 G A ABCA2 Silent p.Y658Y 0.05 TCGA-G9-7523-01 11 63581248 63581248 G A C11orf84 Silent p.V30V 0.05 TCGA-G9-7523-01 13 39263499 39263499 G C FREM2 Missense_Mutation p.R673T 0.04 tolerated(0.23) benign(0.008) TCGA-G9-7523-01 15 91422745 91422745 C T FURIN Silent p.A375A 0.12 TCGA-G9-7523-01 17 38179499 38179499 G A MED24 Missense_Mutation p.T712M 0.25 tolerated(0.13) benign(0.035) TCGA-G9-7523-01 17 38447897 38447897 A G CDC6 Missense_Mutation p.S213G 0.08 deleterious(0.01) possibly_damaging(0.61) TCGA-G9-7523-01 1 38288086 38288086 G A MTF1 Missense_Mutation p.P492S 0.08 tolerated(0.52) benign(0.171) TCGA-G9-7523-01 20 50234090 50234090 T C ATP9A Missense_Mutation p.D785G 0.12 deleterious(0) probably_damaging(0.999) TCGA-G9-7523-01 21 28327146 28327146 G A ADAMTS5 Silent p.D383D 0.10 TCGA-G9-7523-01 2 120078761 120078761 G A C2orf76 Silent p.N51N 0.14 TCGA-G9-7523-01 2 173832057 173832057 G T RAPGEF4 Missense_Mutation p.A297S 0.27 tolerated(0.43) benign(0.035) TCGA-G9-7523-01 2 174777809 174777809 C G SP3 Missense_Mutation p.R673T 0.05 deleterious(0) probably_damaging(0.985) TCGA-G9-7523-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-G9-7523-01 2 228786221 228786221 A C DAW1 Missense_Mutation p.H386P 0.06 deleterious(0) probably_damaging(0.992) TCGA-G9-7523-01 3 142396940 142396940 G A PLS1 Silent p.T188T 0.07 TCGA-G9-7523-01 3 47455847 47455847 A C SCAP Missense_Mutation p.D1139E 0.06 deleterious(0) probably_damaging(1) TCGA-G9-7523-01 4 147561255 147561255 C T POU4F2 Silent p.H175H 0.08 TCGA-G9-7523-01 6 130467207 130467207 A G SAMD3 Silent p.N381N 0.22 TCGA-G9-7523-01 6 82924057 82924057 C A IBTK Missense_Mutation p.R697S 0.14 tolerated(0.15) benign(0.002) TCGA-G9-7523-01 7 129053510 129053510 C A AHCYL2 Missense_Mutation p.S481Y 0.15 tolerated(0.55) benign(0.257) TCGA-G9-7523-01 7 45222942 45222942 C T RAMP3 Silent p.P126P 0.18 TCGA-G9-7525-01 10 104309804 104309804 C G SUFU Missense_Mutation p.A132G 0.27 tolerated(0.18) benign(0.016) TCGA-G9-7525-01 10 23287302 23287302 G A ARMC3 Silent p.A467A 0.47 TCGA-G9-7525-01 10 63959566 63959566 C T RTKN2 Missense_Mutation p.R414Q 0.27 deleterious(0.02) possibly_damaging(0.621) TCGA-G9-7525-01 10 7751115 7751115 T A ITIH2 Missense_Mutation p.V108D 0.26 deleterious(0) probably_damaging(0.991) TCGA-G9-7525-01 11 1266624 1266624 G T MUC5B Missense_Mutation p.R2838S 0.33 unknown(0) TCGA-G9-7525-01 11 6640071 6640071 C T TPP1 Silent p.Q55Q 0.30 TCGA-G9-7525-01 11 86519574 86519574 G A PRSS23 Missense_Mutation p.V297I 0.10 tolerated(0.1) benign(0.023) TCGA-G9-7525-01 12 56647135 56647135 G A ANKRD52 Missense_Mutation p.A346V 0.39 deleterious(0) probably_damaging(0.999) TCGA-G9-7525-01 14 23844881 23844881 G A IL25 Missense_Mutation p.R109H 0.10 tolerated(0.06) probably_damaging(0.965) TCGA-G9-7525-01 14 69256720 69256720 G C ZFP36L1 Missense_Mutation p.R183G 0.49 deleterious(0) possibly_damaging(0.719) TCGA-G9-7525-01 15 53992051 53992051 C T WDR72 Missense_Mutation p.R554Q 0.27 tolerated(0.06) possibly_damaging(0.595) TCGA-G9-7525-01 16 1033810 1033810 T G SOX8 Missense_Mutation p.Y169D 0.06 deleterious(0) probably_damaging(1) TCGA-G9-7525-01 16 70287871 70287871 T - AARS Frame_Shift_Del p.K824Rfs*19 0.12 TCGA-G9-7525-01 17 18022689 18022689 G A MYO15A Missense_Mutation p.R192H 0.12 probably_damaging(0.989) TCGA-G9-7525-01 17 48070792 48070792 G T DLX3 Missense_Mutation p.A163D 0.27 deleterious(0) probably_damaging(0.995) TCGA-G9-7525-01 18 70423359 70423359 A C NETO1 Missense_Mutation p.F298V 0.40 deleterious(0.05) probably_damaging(0.998) TCGA-G9-7525-01 1 118426197 118426197 A C GDAP2 Missense_Mutation p.V387G 0.06 deleterious(0) probably_damaging(0.969) TCGA-G9-7525-01 1 185267218 185267218 A C IVNS1ABP Nonsense_Mutation p.Y626* 0.34 TCGA-G9-7525-01 1 186413081 186413081 A T PDC 3'UTR 0.06 TCGA-G9-7525-01 1 186862236 186862236 T G PLA2G4A Missense_Mutation p.V70G 0.10 deleterious(0.02) benign(0.133) TCGA-G9-7525-01 1 201031216 201031216 C A CACNA1S Missense_Mutation p.G970V 0.11 deleterious(0) probably_damaging(1) TCGA-G9-7525-01 1 8418294 8418294 G A RERE Missense_Mutation p.S1434F 0.52 unknown(0) TCGA-G9-7525-01 1 86210365 86210365 T G COL24A1 Missense_Mutation p.E1552D 0.16 deleterious(0.01) possibly_damaging(0.814) TCGA-G9-7525-01 22 38641959 38641959 C T TMEM184B Missense_Mutation p.V114I 0.41 tolerated(0.81) benign(0.021) TCGA-G9-7525-01 2 132274498 132274498 C T AC093838.4 RNA 0.06 TCGA-G9-7525-01 2 238289893 238289893 G A COL6A3 Missense_Mutation p.S521L 0.32 possibly_damaging(0.541) TCGA-G9-7525-01 2 89975706 89975706 G A IGKV2D-30 Translation_Start_Site p.M1? 0.22 deleterious(0) probably_damaging(0.945) TCGA-G9-7525-01 3 14712672 14712672 A G CCDC174 Missense_Mutation p.M459V 0.39 deleterious_low_confidence(0.01) benign(0.067) TCGA-G9-7525-01 3 183474355 183474355 G A YEATS2 Missense_Mutation p.R477Q 0.08 deleterious_low_confidence(0.02) benign(0.082) TCGA-G9-7525-01 3 46490370 46490370 C T LTF Missense_Mutation p.C399Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-G9-7525-01 3 62257083 62257083 G A PTPRG Missense_Mutation p.R1012H 0.10 deleterious(0) probably_damaging(0.977) TCGA-G9-7525-01 4 24544582 24544582 G - DHX15 Frame_Shift_Del p.P439Lfs*20 0.12 TCGA-G9-7525-01 5 150029062 150029062 A C SYNPO Silent p.R653R 0.30 TCGA-G9-7525-01 6 30882973 30882975 TAG - VARS2 In_Frame_Del p.V112del 0.24 TCGA-G9-7525-01 6 33384486 33384486 G A CUTA Silent p.L180L 0.04 TCGA-G9-7525-01 7 106513199 106513199 T C PIK3CG Silent p.S701S 0.37 TCGA-G9-7525-01 7 138851601 138851601 C T TTC26 Missense_Mutation p.A304V 0.08 deleterious(0) probably_damaging(0.984) TCGA-G9-7525-01 7 15430468 15430468 A G AGMO Missense_Mutation p.F247L 0.22 deleterious(0.02) possibly_damaging(0.831) TCGA-G9-7525-01 7 4831019 4831019 G A AP5Z1 3'UTR 0.21 TCGA-G9-7525-01 9 124532879 124532879 G A DAB2IP Missense_Mutation p.A624T 0.08 deleterious(0) benign(0.276) TCGA-G9-7525-01 9 130167787 130167787 C T SLC2A8 Silent p.C413C 0.37 TCGA-G9-7525-01 9 77599836 77599836 C T C9orf41 Missense_Mutation p.G372E 0.08 deleterious(0) probably_damaging(0.996) TCGA-G9-7525-01 9 95609134 95609134 A G ZNF484 Silent p.F647F 0.04 TCGA-G9-A9S0-01 10 85965592 85965592 G A CDHR1 Missense_Mutation p.G291E 0.18 tolerated(0.08) possibly_damaging(0.558) TCGA-G9-A9S0-01 11 11374731 11374731 A C CSNK2A3 5'UTR 0.33 TCGA-G9-A9S0-01 14 58604793 58604793 G C C14orf37 Missense_Mutation p.N428K 0.11 tolerated(0.29) possibly_damaging(0.742) TCGA-G9-A9S0-01 14 69343830 69343836 ATGACTT TC ACTN1 Frame_Shift_Del p.Q850Rfs*29 0.48 TCGA-G9-A9S0-01 16 20386194 20386194 C T PDILT Missense_Mutation p.V211I 0.37 tolerated(0.52) benign(0.079) TCGA-G9-A9S0-01 17 19584867 19584867 G T SLC47A2 Silent p.V463V 0.35 TCGA-G9-A9S0-01 17 40996957 40996957 C T AOC2 Missense_Mutation p.A105V 0.24 tolerated(0.92) benign(0.163) TCGA-G9-A9S0-01 17 48072109 48072109 T G DLX3 Missense_Mutation p.E85A 0.21 tolerated(0.11) benign(0.039) TCGA-G9-A9S0-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.27 deleterious(0) probably_damaging(0.999) TCGA-G9-A9S0-01 18 51013194 51013194 C T DCC Missense_Mutation p.T1255M 0.19 deleterious(0.01) probably_damaging(0.909) TCGA-G9-A9S0-01 18 58039629 58039629 G T MC4R 5'UTR 0.33 TCGA-G9-A9S0-01 19 11660241 11660241 C T CNN1 Missense_Mutation p.A202V 0.22 deleterious(0.04) benign(0.368) TCGA-G9-A9S0-01 19 3600433 3600433 A T TBXA2R Missense_Mutation p.L67H 0.26 deleterious(0) probably_damaging(1) TCGA-G9-A9S0-01 1 103412512 103412512 C T COL11A1 Missense_Mutation p.G1057S 0.33 unknown(0) TCGA-G9-A9S0-01 1 175362981 175362981 C T TNR Missense_Mutation p.V431M 0.42 deleterious(0) probably_damaging(0.992) TCGA-G9-A9S0-01 1 65311267 65311267 T A JAK1 Nonsense_Mutation p.K682* 0.05 TCGA-G9-A9S0-01 2 17851748 17851748 G A SMC6 Missense_Mutation p.S1002F 0.19 deleterious(0) probably_damaging(0.996) TCGA-G9-A9S0-01 3 101572595 101572595 A C NFKBIZ Missense_Mutation p.N409H 0.40 deleterious(0) possibly_damaging(0.67) TCGA-G9-A9S0-01 3 157154853 157154853 G A PTX3 Splice_Site p.X44_splice 0.37 TCGA-G9-A9S0-01 3 185997730 185997730 G A DGKG Silent p.Y234Y 0.04 TCGA-G9-A9S0-01 3 50421711 50421711 C A CACNA2D2 Missense_Mutation p.D190Y 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-G9-A9S0-01 4 111119469 111119469 A T ELOVL6 Nonsense_Mutation p.L8* 0.25 TCGA-G9-A9S0-01 4 13571593 13571593 C G BOD1L1 3'UTR 0.43 TCGA-G9-A9S0-01 5 5146494 5146494 G C ADAMTS16 Missense_Mutation p.D143H 0.24 tolerated(0.15) benign(0.022) TCGA-G9-A9S0-01 5 54281336 54281336 C T ESM1 Missense_Mutation p.V4I 0.24 tolerated(0.26) benign(0) TCGA-G9-A9S0-01 6 36995755 36995755 T G FGD2 Missense_Mutation p.L595R 0.23 deleterious(0.05) probably_damaging(0.999) TCGA-G9-A9S0-01 6 398917 398917 G A IRF4 Missense_Mutation p.E243K 0.21 deleterious(0.04) benign(0.439) TCGA-G9-A9S0-01 7 98574218 98574218 C T TRRAP Missense_Mutation p.P2684L 0.22 possibly_damaging(0.654) TCGA-G9-A9S0-01 9 140459546 140459546 G C DPH7 Missense_Mutation p.T234S 0.30 tolerated(0.08) possibly_damaging(0.734) TCGA-G9-A9S4-01 10 108427560 108427560 G A SORCS1 Silent p.C730C 0.24 TCGA-G9-A9S4-01 11 118209902 118209902 C T CD3D Missense_Mutation p.G164E 0.40 tolerated(0.22) probably_damaging(0.912) TCGA-G9-A9S4-01 11 55111560 55111560 C T OR4A16 Missense_Mutation p.A295V 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.77) TCGA-G9-A9S4-01 11 55563060 55563060 T C OR5D14 Missense_Mutation p.M10T 0.35 tolerated(0.54) benign(0) TCGA-G9-A9S4-01 11 59856226 59856226 G A MS4A2 5'UTR 0.30 TCGA-G9-A9S4-01 12 121647993 121647993 C T P2RX4 Missense_Mutation p.A9V 0.25 tolerated(0.5) benign(0.015) TCGA-G9-A9S4-01 12 52843383 52843383 G A KRT6B Missense_Mutation p.T316I 0.10 deleterious(0.01) possibly_damaging(0.733) TCGA-G9-A9S4-01 12 53499389 53499389 G A SOAT2 Missense_Mutation p.R107H 0.06 deleterious(0) probably_damaging(0.939) TCGA-G9-A9S4-01 12 96359480 96359480 G A AMDHD1 Missense_Mutation p.A319T 0.35 deleterious(0.03) probably_damaging(0.992) TCGA-G9-A9S4-01 14 38679324 38679324 G A SSTR1 Missense_Mutation p.V244M 0.19 deleterious(0) possibly_damaging(0.624) TCGA-G9-A9S4-01 14 47120583 47120583 A C RPL10L Missense_Mutation p.F119L 0.39 deleterious(0.01) benign(0.146) TCGA-G9-A9S4-01 14 71485738 71485738 C T PCNX Silent p.I1003I 0.34 TCGA-G9-A9S4-01 15 65917689 65917689 C T SLC24A1 Missense_Mutation p.P424L 0.28 possibly_damaging(0.908) TCGA-G9-A9S4-01 15 75942239 75942239 C T SNX33 Missense_Mutation p.R266C 0.29 deleterious(0) probably_damaging(0.998) TCGA-G9-A9S4-01 17 55752422 55752422 G A MSI2 Missense_Mutation p.G294R 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.6) TCGA-G9-A9S4-01 17 62133144 62133144 C T ERN1 Silent p.S521S 0.30 TCGA-G9-A9S4-01 17 7578443 7578443 A G TP53 Missense_Mutation p.Y163H 0.53 deleterious(0) probably_damaging(0.999) TCGA-G9-A9S4-01 18 22057269 22057269 G T HRH4 Missense_Mutation p.A306S 0.43 deleterious(0.01) possibly_damaging(0.887) TCGA-G9-A9S4-01 18 2892375 2892375 G A EMILIN2 Silent p.S750S 0.49 TCGA-G9-A9S4-01 18 3255826 3255826 C T MYL12A Silent p.Y142Y 0.24 TCGA-G9-A9S4-01 19 12060277 12060277 G C ZNF700 Missense_Mutation p.G480R 0.38 deleterious(0) benign(0.357) TCGA-G9-A9S4-01 19 20117285 20117293 TTTATAGGG - ZNF682 In_Frame_Del p.P340_K342del 0.21 TCGA-G9-A9S4-01 19 51871170 51871170 G - CLDND2 Frame_Shift_Del p.Q94Rfs*15 0.33 TCGA-G9-A9S4-01 19 5844008 5844008 G A FUT3 Silent p.Y281Y 0.33 TCGA-G9-A9S4-01 19 6495339 6495339 G A TUBB4A Missense_Mutation p.R391C 0.29 tolerated_low_confidence(0.06) probably_damaging(0.936) TCGA-G9-A9S4-01 1 100586957 100586957 C A SASS6 Missense_Mutation p.A154S 0.26 deleterious(0) probably_damaging(0.965) TCGA-G9-A9S4-01 1 196874338 196874338 A G CFHR4 Silent p.P118P 0.34 TCGA-G9-A9S4-01 1 237666715 237666715 G A RYR2 Silent p.K841K 0.07 TCGA-G9-A9S4-01 1 237774130 237774130 G A RYR2 Silent p.P1584P 0.35 TCGA-G9-A9S4-01 22 39112791 39112791 G A GTPBP1 Missense_Mutation p.R207H 0.22 deleterious(0.02) possibly_damaging(0.545) TCGA-G9-A9S4-01 3 139071544 139071544 G A MRPS22 Missense_Mutation p.R263H 0.08 tolerated(0.06) possibly_damaging(0.828) TCGA-G9-A9S4-01 3 31774771 31774773 TGT GG OSBPL10 Frame_Shift_Del p.E357Dfs*43 0.23 TCGA-G9-A9S4-01 3 36872645 36872645 C A TRANK1 Missense_Mutation p.C2766F 0.08 tolerated(0.7) benign(0.013) TCGA-G9-A9S4-01 3 9470602 9470602 A G SETD5 5'UTR 0.45 TCGA-G9-A9S4-01 4 108954337 108954337 G A HADH Missense_Mutation p.A256T 0.46 deleterious(0) probably_damaging(0.986) TCGA-G9-A9S4-01 5 151045995 151045995 C T SPARC Missense_Mutation p.E221K 0.09 tolerated(0.33) benign(0.013) TCGA-G9-A9S4-01 7 144062419 144062419 C T ARHGEF5 Missense_Mutation p.T886I 0.16 deleterious(0.04) benign(0.08) TCGA-G9-A9S4-01 7 18875186 18875186 C T HDAC9 Missense_Mutation p.P855S 0.41 deleterious(0) possibly_damaging(0.572) TCGA-G9-A9S4-01 8 110984838 110984838 C T KCNV1 Missense_Mutation p.V214I 0.58 tolerated(1) benign(0) TCGA-G9-A9S4-01 8 43054760 43054760 G T HGSNAT 3'UTR 0.67 TCGA-G9-A9S4-01 8 49647827 49647827 T A EFCAB1 5'Flank 0.33 TCGA-G9-A9S4-01 8 87486552 87486552 G A RMDN1 Silent p.F310F 0.67 TCGA-G9-A9S4-01 8 95844240 95844240 T - INTS8 Frame_Shift_Del p.S198Lfs*5 0.42 TCGA-G9-A9S4-01 9 131196779 131196779 G A CERCAM Silent p.T474T 0.43 TCGA-G9-A9S4-01 X 83129065 83129065 C T CYLC1 Missense_Mutation p.P450L 0.73 deleterious(0.02) benign(0.198) TCGA-G9-A9S7-01 12 113830742 113830742 G A SDS 3'UTR 0.19 TCGA-G9-A9S7-01 13 21245111 21245111 G A IFT88 Splice_Site p.X735_splice 0.17 TCGA-G9-A9S7-01 13 28844930 28844930 C G PAN3 Missense_Mutation p.R629G 0.23 deleterious(0) probably_damaging(1) TCGA-G9-A9S7-01 14 65008203 65008203 C T HSPA2 Silent p.I212I 0.06 TCGA-G9-A9S7-01 14 80271468 80271468 A C NRXN3 Missense_Mutation p.D940A 0.33 tolerated(0.16) benign(0.001) TCGA-G9-A9S7-01 15 65551824 65551824 A T PARP16 Missense_Mutation p.L298Q 0.10 deleterious(0.02) probably_damaging(0.973) TCGA-G9-A9S7-01 15 90610702 90610702 C T ZNF710 Silent p.F111F 0.18 TCGA-G9-A9S7-01 16 15705570 15705570 G A KIAA0430 Missense_Mutation p.R1166C 0.26 deleterious(0) probably_damaging(0.999) TCGA-G9-A9S7-01 1 114506077 114506077 G A HIPK1 Silent p.A724A 0.17 TCGA-G9-A9S7-01 1 19474542 19474542 G C UBR4 Missense_Mutation p.S2525C 0.22 benign(0.155) TCGA-G9-A9S7-01 1 2077532 2077532 G C PRKCZ Missense_Mutation p.E207Q 0.18 tolerated(0.45) benign(0.158) TCGA-G9-A9S7-01 1 236371482 236371482 G A GPR137B 3'UTR 0.07 TCGA-G9-A9S7-01 21 44524456 44524456 G A U2AF1 Missense_Mutation p.S34F 0.22 deleterious(0) possibly_damaging(0.835) TCGA-G9-A9S7-01 22 38468599 38468599 T A PICK1 Silent p.L224L 0.26 TCGA-G9-A9S7-01 2 129026005 129026005 G A HS6ST1 Missense_Mutation p.R323W 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-G9-A9S7-01 2 207436508 207436508 G A ADAM23 Missense_Mutation p.D542N 0.29 tolerated(0.47) benign(0.218) TCGA-G9-A9S7-01 3 122287807 122287807 C T DTX3L Missense_Mutation p.R291C 0.32 tolerated(0.15) benign(0.009) TCGA-G9-A9S7-01 3 180703757 180703757 T G DNAJC19 Missense_Mutation p.R79S 0.41 deleterious(0.01) benign(0.026) TCGA-G9-A9S7-01 3 190122701 190122701 C T CLDN16 Missense_Mutation p.T193M 0.21 tolerated(0.24) benign(0.097) TCGA-G9-A9S7-01 5 1038080 1038080 C T NKD2 Silent p.A316A 0.33 TCGA-G9-A9S7-01 5 140223018 140223018 C G PCDHA8 Missense_Mutation p.I704M 0.18 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-G9-A9S7-01 5 140764756 140764756 C T PCDHGA7 Missense_Mutation p.R764W 0.22 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-G9-A9S7-01 5 170876179 170876179 C T FGF18 Silent p.F93F 0.10 TCGA-G9-A9S7-01 6 155114092 155114092 G C SCAF8 Missense_Mutation p.A153P 0.24 tolerated(1) unknown(0) TCGA-G9-A9S7-01 6 50805733 50805733 A G TFAP2B Silent p.E289E 0.29 TCGA-G9-A9S7-01 6 89790855 89790855 G A PNRC1 Missense_Mutation p.R81H 0.45 tolerated_low_confidence(0.19) benign(0.004) TCGA-G9-A9S7-01 7 128658068 128658068 G C TNPO3 Missense_Mutation p.D88E 0.06 tolerated(0.13) benign(0.033) TCGA-G9-A9S7-01 7 63538401 63538401 C T ZNF727 Missense_Mutation p.S325L 0.48 deleterious(0.02) benign(0.163) TCGA-G9-A9S7-01 7 6797531 6797531 G C RSPH10B2 Missense_Mutation p.E75Q 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-G9-A9S7-01 9 37006485 37006485 A G PAX5 Missense_Mutation p.S154P 0.46 tolerated(0.58) benign(0.013) TCGA-G9-A9S7-01 Y 3447294 3447294 C G TGIF2LY Silent p.A3A 0.27 TCGA-H9-7775-01 10 113920464 113920464 C A GPAM Missense_Mutation p.D553Y 0.11 deleterious(0.02) possibly_damaging(0.552) TCGA-H9-7775-01 10 43696237 43696237 G A RASGEF1A Missense_Mutation p.R187W 0.22 deleterious(0.01) possibly_damaging(0.586) TCGA-H9-7775-01 11 66625511 66625511 G A LRFN4 Missense_Mutation p.R99H 0.37 tolerated(0.14) probably_damaging(0.941) TCGA-H9-7775-01 11 92568223 92568223 C T FAT3 Silent p.D3353D 0.19 TCGA-H9-7775-01 12 124171429 124171429 C A TCTN2 Missense_Mutation p.T204N 0.38 tolerated(0.25) possibly_damaging(0.493) TCGA-H9-7775-01 12 132466837 132466837 G T EP400 Silent p.P581P 0.11 TCGA-H9-7775-01 12 85260962 85260962 A G SLC6A15 Silent p.C502C 0.10 TCGA-H9-7775-01 14 70713623 70713623 T C ADAM21P1 RNA 0.48 TCGA-H9-7775-01 14 73719446 73719446 C T PAPLN Missense_Mutation p.R326C 0.35 deleterious(0) probably_damaging(0.981) TCGA-H9-7775-01 14 88658679 88658679 C T KCNK10 Missense_Mutation p.V253M 0.29 deleterious(0.03) probably_damaging(0.985) TCGA-H9-7775-01 16 66964 66964 C T WASH4P Silent p.L224L 0.16 TCGA-H9-7775-01 17 11833352 11833352 A G DNAH9 Missense_Mutation p.N4016S 0.06 possibly_damaging(0.571) TCGA-H9-7775-01 17 15532066 15532066 G A TRIM16 Missense_Mutation p.H520Y 0.38 tolerated(0.06) possibly_damaging(0.718) TCGA-H9-7775-01 17 3445844 3445844 G A TRPV3 Silent p.N205N 0.36 TCGA-H9-7775-01 17 3917452 3917452 T C ZZEF1 Missense_Mutation p.D2782G 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-H9-7775-01 19 36362608 36362608 C T APLP1 Missense_Mutation p.P211L 0.17 deleterious(0.02) probably_damaging(1) TCGA-H9-7775-01 19 4231190 4231190 C T EBI3 Missense_Mutation p.P24S 0.27 tolerated(0.31) benign(0.006) TCGA-H9-7775-01 19 4543619 4543619 C T SEMA6B Silent p.V887V 0.21 TCGA-H9-7775-01 19 53086943 53086943 C T ZNF701 3'UTR 0.17 TCGA-H9-7775-01 1 11137678 11137678 C T EXOSC10 Missense_Mutation p.G594R 0.10 tolerated(0.55) benign(0.011) TCGA-H9-7775-01 1 159683405 159683405 G A CRP Silent p.G195G 0.19 TCGA-H9-7775-01 1 32690027 32690027 C T EIF3I Silent p.V67V 0.08 TCGA-H9-7775-01 1 74929125 74929125 C T TNNI3K Missense_Mutation p.A772V 0.04 tolerated(0.21) possibly_damaging(0.508) TCGA-H9-7775-01 20 2776682 2776682 G A CPXM1 Silent p.I456I 0.45 TCGA-H9-7775-01 21 41719856 41719856 G T DSCAM Silent p.T317T 0.29 TCGA-H9-7775-01 21 45953635 45953635 T A TSPEAR Missense_Mutation p.T159S 0.33 deleterious(0.02) benign(0.358) TCGA-H9-7775-01 22 40802485 40802485 A G SGSM3 Missense_Mutation p.N335S 0.10 deleterious(0) probably_damaging(0.945) TCGA-H9-7775-01 2 179702244 179702244 C A CCDC141 Silent p.V1234V 0.06 TCGA-H9-7775-01 2 191940981 191940981 A G STAT4 Missense_Mutation p.I115T 0.13 deleterious(0) probably_damaging(0.997) TCGA-H9-7775-01 2 29237325 29237325 T C FAM179A Silent p.P314P 0.14 TCGA-H9-7775-01 2 73518565 73518565 C A EGR4 3'UTR 0.31 TCGA-H9-7775-01 3 119635000 119635000 G A GSK3B Nonsense_Mutation p.R167* 0.31 TCGA-H9-7775-01 4 1643058 1643058 G A FAM53A Missense_Mutation p.R387C 0.06 tolerated(0.07) benign(0.13) TCGA-H9-7775-01 4 78815325 78815325 C T MRPL1 Silent p.Y197Y 0.16 TCGA-H9-7775-01 6 146480672 146480672 C T GRM1 Nonsense_Mutation p.R297* 0.35 TCGA-H9-7775-01 6 159654630 159654630 C T FNDC1 Missense_Mutation p.S1029F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-H9-7775-01 6 167550766 167550766 G A CCR6 Missense_Mutation p.G350R 0.21 tolerated(0.89) benign(0) TCGA-H9-7775-01 7 4167093 4167093 G A SDK1 Missense_Mutation p.E1302K 0.06 tolerated(0.19) benign(0.253) TCGA-H9-7775-01 7 5780784 5780784 A C RNF216 Silent p.S288S 0.17 TCGA-H9-7775-01 7 86795841 86795851 ATAAAAGGCTT - DMTF1 Frame_Shift_Del p.H51Lfs*5 0.32 TCGA-H9-7775-01 8 2820915 2820915 C T CSMD1 Missense_Mutation p.V3095M 0.64 possibly_damaging(0.561) TCGA-H9-7775-01 X 40457949 40457949 T C ATP6AP2 Missense_Mutation p.L184P 0.55 deleterious(0) probably_damaging(0.926) TCGA-H9-A6BX-01 10 13642288 13642288 T C PRPF18 Silent p.N63N 0.06 TCGA-H9-A6BX-01 19 38949966 38949966 C T RYR1 Missense_Mutation p.S783L 0.07 probably_damaging(0.994) TCGA-H9-A6BX-01 1 10380118 10380118 G A KIF1B Silent p.L665L 0.28 TCGA-H9-A6BX-01 1 203140290 203140290 C T MYBPH Missense_Mutation p.V278I 0.05 tolerated(0.06) benign(0.319) TCGA-H9-A6BX-01 3 128181414 128181414 C A DNAJB8 Missense_Mutation p.Q225H 0.04 tolerated(0.2) possibly_damaging(0.506) TCGA-H9-A6BX-01 3 47103828 47103828 G A SETD2 Nonsense_Mutation p.R2040* 0.05 TCGA-H9-A6BX-01 9 131599993 131599993 G C CCBL1 Missense_Mutation p.L180V 0.05 tolerated(0.21) benign(0.063) TCGA-H9-A6BY-01 10 99502873 99502873 T G ZFYVE27 Missense_Mutation p.L74V 0.32 tolerated(0.08) possibly_damaging(0.567) TCGA-H9-A6BY-01 11 3691150 3691150 C T CHRNA10 Missense_Mutation p.R28Q 0.33 tolerated(0.08) benign(0.029) TCGA-H9-A6BY-01 11 47605984 47605984 C T NDUFS3 Missense_Mutation p.P249L 0.24 deleterious(0) benign(0.006) TCGA-H9-A6BY-01 12 49435198 49435199 - G KMT2D Frame_Shift_Ins p.A2119Rfs*36 0.15 TCGA-H9-A6BY-01 12 50344881 50344881 G A AQP2 Missense_Mutation p.V90M 0.25 tolerated(0.2) benign(0.241) TCGA-H9-A6BY-01 12 6554692 6554692 A G CD27 Missense_Mutation p.H80R 0.31 deleterious(0.03) probably_damaging(0.946) TCGA-H9-A6BY-01 13 103718522 103718522 G T SLC10A2 Missense_Mutation p.F26L 0.05 tolerated(0.24) benign(0.027) TCGA-H9-A6BY-01 14 75514337 75514338 - T MLH3 Frame_Shift_Ins p.N674Kfs*13 0.35 TCGA-H9-A6BY-01 15 73622050 73622050 G A HCN4 Missense_Mutation p.A485V 0.38 deleterious(0.01) unknown(0) TCGA-H9-A6BY-01 16 19041626 19041626 G A TMC7 Silent p.L264L 0.37 TCGA-H9-A6BY-01 17 16593777 16593777 C T CCDC144A Silent p.Y21Y 0.40 TCGA-H9-A6BY-01 17 76117241 76117241 G A TMC6 Missense_Mutation p.P463L 0.29 tolerated(0.4) benign(0.003) TCGA-H9-A6BY-01 17 76435207 76435207 C T DNAH17 Missense_Mutation p.V3910M 0.10 benign(0.025) TCGA-H9-A6BY-01 18 32843993 32843993 C T ZSCAN30 Silent p.L108L 0.05 TCGA-H9-A6BY-01 20 3017847 3017847 T A PTPRA Missense_Mutation p.L749Q 0.32 deleterious(0) probably_damaging(1) TCGA-H9-A6BY-01 22 50900484 50900484 C T SBF1 Missense_Mutation p.D821N 0.28 deleterious(0) probably_damaging(0.999) TCGA-H9-A6BY-01 2 121746844 121746844 C T GLI2 Silent p.G1118G 0.34 TCGA-H9-A6BY-01 2 182468750 182468751 AT - CERKL Frame_Shift_Del p.F99Lfs*11 0.32 TCGA-H9-A6BY-01 2 215843155 215843156 - T ABCA12 Frame_Shift_Ins p.N1671Kfs*2 0.25 TCGA-H9-A6BY-01 2 241725859 241725859 G A KIF1A Silent p.R167R 0.40 TCGA-H9-A6BY-01 2 89086005 89086005 C T ANKRD36BP2 RNA 0.33 TCGA-H9-A6BY-01 3 52383437 52383437 G A DNAH1 Splice_Site p.X842_splice 0.07 TCGA-H9-A6BY-01 4 126328050 126328050 G A FAT4 Missense_Mutation p.V1775I 0.11 probably_damaging(0.961) TCGA-H9-A6BY-01 4 89013441 89013441 A G ABCG2 Missense_Mutation p.V638A 0.32 deleterious(0.05) benign(0.005) TCGA-H9-A6BY-01 5 54410070 54410070 C T CDC20B Silent p.T512T 0.31 TCGA-H9-A6BY-01 6 127796912 127796912 G A SOGA3 Silent p.A753A 0.05 TCGA-H9-A6BY-01 6 99848369 99848372 TCAG - PNISR 3'UTR 0.67 TCGA-H9-A6BY-01 8 10464989 10464989 G T RP1L1 Missense_Mutation p.P2207T 0.06 unknown(0) TCGA-H9-A6BY-01 8 75929559 75929559 C T CRISPLD1 Missense_Mutation p.S334F 0.05 deleterious(0) probably_damaging(1) TCGA-H9-A6BY-01 8 95795914 95795914 G T DPY19L4 Missense_Mutation p.A578S 0.39 tolerated(0.46) benign(0.181) TCGA-H9-A6BY-01 9 104238562 104238562 C A TMEM246 Missense_Mutation p.L271F 0.35 tolerated(0.61) benign(0.003) TCGA-H9-A6BY-01 9 117104291 117104291 G A AKNA Missense_Mutation p.S1291F 0.31 deleterious(0) probably_damaging(0.935) TCGA-H9-A6BY-01 X 96140039 96140039 G A RPA4 Missense_Mutation p.V244I 0.07 tolerated(0.89) benign(0.001) TCGA-HC-7075-01 10 43650664 43650664 T A CSGALNACT2 Missense_Mutation p.C23S 0.05 tolerated_low_confidence(0.16) benign(0.001) TCGA-HC-7075-01 10 95089443 95089443 C T MYOF Missense_Mutation p.G1654S 0.07 deleterious(0.01) probably_damaging(1) TCGA-HC-7075-01 11 118223127 118223127 G A CD3G Silent p.K164K 0.38 TCGA-HC-7075-01 11 3022276 3022276 G A CARS 3'UTR 0.16 TCGA-HC-7075-01 11 7064143 7064143 G T NLRP14 Missense_Mutation p.V296L 0.19 deleterious(0) probably_damaging(0.989) TCGA-HC-7075-01 12 47163194 47163194 G C SLC38A4 Missense_Mutation p.I439M 0.15 tolerated(0.23) benign(0.331) TCGA-HC-7075-01 14 101349274 101349274 G A RTL1 Missense_Mutation p.P618S 0.13 tolerated(0.23) benign(0.144) TCGA-HC-7075-01 16 30410493 30410493 G C ZNF48 3'UTR 0.19 TCGA-HC-7075-01 18 19112465 19112498 TCTTCCGACGCATCATGCTGAATACCCATATTCG - ESCO1 Frame_Shift_Del p.R771Kfs*6 0.27 TCGA-HC-7075-01 19 47236332 47236332 G T STRN4 Nonsense_Mutation p.S234* 0.14 TCGA-HC-7075-01 1 101188742 101188742 C G VCAM1 Missense_Mutation p.D169E 0.21 tolerated(0.73) benign(0) TCGA-HC-7075-01 1 12884845 12884845 G A PRAMEF11 Silent p.G422G 0.03 TCGA-HC-7075-01 1 152770502 152770502 C T LCE1D Missense_Mutation p.R78C 0.08 unknown(0) TCGA-HC-7075-01 1 161561139 161561139 C T FCGR2C 5'Flank 0.11 TCGA-HC-7075-01 1 175054615 175054615 C T TNN Silent p.L437L 0.25 TCGA-HC-7075-01 22 39770548 39770548 C T SYNGR1 Silent p.I109I 0.37 TCGA-HC-7075-01 2 231033887 231033887 G A SP110 Missense_Mutation p.L699F 0.33 tolerated(1) possibly_damaging(0.765) TCGA-HC-7075-01 2 90154083 90154083 A T IGKV3D-15 Missense_Mutation p.Q57L 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-HC-7075-01 3 33552113 33552113 T C CLASP2 Missense_Mutation p.I1426M 0.14 deleterious(0.02) benign(0.14) TCGA-HC-7075-01 4 140641036 140641036 A T MAML3 Missense_Mutation p.M953K 0.41 benign(0.285) TCGA-HC-7075-01 4 155157178 155157178 A G DCHS2 Missense_Mutation p.F2421L 0.07 deleterious(0) probably_damaging(0.947) TCGA-HC-7075-01 4 162680679 162680679 A G FSTL5 Missense_Mutation p.I204T 0.16 tolerated(0.27) probably_damaging(0.921) TCGA-HC-7075-01 4 170625197 170625197 G C CLCN3 Missense_Mutation p.G538R 0.14 deleterious(0) possibly_damaging(0.894) TCGA-HC-7075-01 4 9982359 9982359 C T SLC2A9 Missense_Mutation p.V180I 0.09 tolerated(1) benign(0.005) TCGA-HC-7075-01 5 82940276 82940276 C A HAPLN1 Silent p.G227G 0.19 TCGA-HC-7075-01 6 105821366 105821366 A C PREP Missense_Mutation p.V158G 0.11 deleterious(0.01) probably_damaging(0.936) TCGA-HC-7075-01 6 33561062 33561062 C T GGNBP1 3'Flank 0.28 TCGA-HC-7075-01 7 127255106 127255106 C T PAX4 Missense_Mutation p.R55H 0.18 deleterious(0) probably_damaging(0.991) TCGA-HC-7075-01 8 120575111 120575111 C A ENPP2 Nonsense_Mutation p.E855* 0.05 TCGA-HC-7075-01 8 41557063 41557063 T G ANK1 Missense_Mutation p.E863A 0.24 tolerated(0.14) benign(0.008) TCGA-HC-7075-01 9 139360546 139360557 CGTAGGAACCGG - SEC16A In_Frame_Del p.A1387_Y1390del 0.19 TCGA-HC-7075-01 X 16720991 16720991 G T CTPS2 Nonsense_Mutation p.S12* 0.06 TCGA-HC-7075-01 X 86068206 86068206 G A DACH2 Missense_Mutation p.R488Q 0.71 deleterious(0.03) benign(0.01) TCGA-HC-7077-01 10 121616907 121616907 C T MCMBP Silent p.L124L 0.10 TCGA-HC-7077-01 10 85972941 85972941 C T CDHR1 Missense_Mutation p.T626M 0.09 deleterious(0) probably_damaging(0.996) TCGA-HC-7077-01 10 888969 888969 C A LARP4B Missense_Mutation p.M183I 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-HC-7077-01 10 93253266 93253266 G A HECTD2 Splice_Site p.X507_splice 0.35 TCGA-HC-7077-01 10 95720147 95720147 C T PIPSL RNA 0.11 TCGA-HC-7077-01 11 2549250 2549250 T C KCNQ1 Splice_Site p.X159_splice 0.29 TCGA-HC-7077-01 11 44080233 44080233 C T ACCSL Silent p.L536L 0.28 TCGA-HC-7077-01 11 551945 551945 G A LRRC56 Missense_Mutation p.R339Q 0.12 tolerated(0.29) benign(0.033) TCGA-HC-7077-01 11 64536550 64536551 TG - SF1 Frame_Shift_Del p.T402Sfs*16 0.20 TCGA-HC-7077-01 11 94910979 94910979 T C SESN3 Missense_Mutation p.N384S 0.06 tolerated(0.25) benign(0.024) TCGA-HC-7077-01 12 121880538 121880538 G A KDM2B Silent p.P902P 0.16 TCGA-HC-7077-01 12 13716716 13716716 G A GRIN2B Silent p.T1152T 0.35 TCGA-HC-7077-01 12 39727024 39727024 T C KIF21A Missense_Mutation p.K826R 0.30 tolerated(0.09) benign(0.103) TCGA-HC-7077-01 12 40677930 40677930 A G LRRK2 Missense_Mutation p.Q832R 0.17 tolerated(0.19) benign(0.06) TCGA-HC-7077-01 12 6101119 6101119 C T VWF Missense_Mutation p.G2222S 0.21 tolerated(0.42) probably_damaging(0.982) TCGA-HC-7077-01 12 70072612 70072612 A G BEST3 Silent p.Y181Y 0.10 TCGA-HC-7077-01 13 114523831 114523831 G - GAS6 3'UTR 0.52 TCGA-HC-7077-01 13 60565296 60565296 T C DIAPH3 Missense_Mutation p.I453V 0.26 tolerated(0.49) benign(0.029) TCGA-HC-7077-01 13 73293092 73293092 T G MZT1 Missense_Mutation p.K75Q 0.07 tolerated(0.11) possibly_damaging(0.82) TCGA-HC-7077-01 14 106641580 106641580 C T IGHV1-18 Missense_Mutation p.V112M 0.57 tolerated(0.24) benign(0.06) TCGA-HC-7077-01 14 70125381 70125381 C - KIAA0247 Frame_Shift_Del p.L25Ffs*3 0.14 TCGA-HC-7077-01 15 34553159 34553159 C T SLC12A6 Missense_Mutation p.E127K 0.11 tolerated(0.31) benign(0.103) TCGA-HC-7077-01 15 48707834 48707834 A G FBN1 Silent p.N2650N 0.30 TCGA-HC-7077-01 15 51507272 51507272 A G CYP19A1 Missense_Mutation p.V339A 0.30 deleterious(0.05) benign(0.425) TCGA-HC-7077-01 16 29821006 29821006 G - MAZ Frame_Shift_Del p.A478Pfs*47 0.39 TCGA-HC-7077-01 16 66431906 66431906 C - CDH5 Frame_Shift_Del p.I462Lfs*42 0.21 TCGA-HC-7077-01 16 89703634 89703634 G A DPEP1 Missense_Mutation p.R205H 0.13 deleterious(0.01) probably_damaging(1) TCGA-HC-7077-01 17 1787221 1787221 C G RPA1 Missense_Mutation p.L453V 0.33 deleterious(0) benign(0.189) TCGA-HC-7077-01 17 35945534 35945534 G A SYNRG Nonsense_Mutation p.R126* 0.13 TCGA-HC-7077-01 17 76421442 76421442 C T DNAH17 Missense_Mutation p.G4399R 0.07 probably_damaging(0.997) TCGA-HC-7077-01 19 1113561 1113561 C T SBNO2 Silent p.Q740Q 0.06 TCGA-HC-7077-01 19 47856825 47856825 G A DHX34 Missense_Mutation p.V180M 0.20 deleterious(0) probably_damaging(1) TCGA-HC-7077-01 19 9014619 9014619 G C MUC16 Missense_Mutation p.Q12786E 0.27 benign(0.334) TCGA-HC-7077-01 1 114942114 114942114 G A TRIM33 Missense_Mutation p.R1029C 0.14 deleterious(0) possibly_damaging(0.796) TCGA-HC-7077-01 1 185987441 185987441 T C HMCN1 Silent p.N1809N 0.26 TCGA-HC-7077-01 1 215368303 215368303 C T KCNK2 Silent p.S277S 0.31 TCGA-HC-7077-01 1 22159980 22159980 A G HSPG2 Missense_Mutation p.F3653S 0.07 probably_damaging(0.998) TCGA-HC-7077-01 1 28240635 28240635 C T RPA2 Missense_Mutation p.G19D 0.08 deleterious(0.02) benign(0.338) TCGA-HC-7077-01 1 34102147 34102147 C T CSMD2 Silent p.P1554P 0.32 TCGA-HC-7077-01 1 46751117 46751117 G - LRRC41 Frame_Shift_Del p.P471Hfs*8 0.14 TCGA-HC-7077-01 20 55099979 55099979 G A FAM209A Missense_Mutation p.G39R 0.07 tolerated(0.16) benign(0.007) TCGA-HC-7077-01 20 62038263 62038263 C T KCNQ2 Missense_Mutation p.D785N 0.28 deleterious(0) probably_damaging(0.998) TCGA-HC-7077-01 21 44283564 44283564 T C WDR4 Missense_Mutation p.M147V 0.28 deleterious(0.01) possibly_damaging(0.5) TCGA-HC-7077-01 22 38455291 38455291 A G PICK1 Missense_Mutation p.N31S 0.31 deleterious(0.01) possibly_damaging(0.895) TCGA-HC-7077-01 22 43088924 43088924 G A A4GALT Missense_Mutation p.T345M 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-HC-7077-01 2 21233706 21233706 G A APOB Nonsense_Mutation p.R2012* 0.24 TCGA-HC-7077-01 2 50464003 50464003 C T NRXN1 Missense_Mutation p.S1197N 0.26 tolerated(0.08) probably_damaging(0.959) TCGA-HC-7077-01 3 122259686 122259686 G C PARP9 Silent p.T501T 0.10 TCGA-HC-7077-01 3 14536380 14536380 C T GRIP2 RNA 0.22 TCGA-HC-7077-01 3 14863047 14863047 G A FGD5 Missense_Mutation p.M823I 0.11 deleterious(0.01) probably_damaging(0.985) TCGA-HC-7077-01 3 196731000 196731000 C T MFI2 Intron 0.34 TCGA-HC-7077-01 3 88205229 88205229 T C C3orf38 Missense_Mutation p.F145S 0.40 deleterious(0) probably_damaging(0.984) TCGA-HC-7077-01 5 150073641 150073641 C T RBM22 Missense_Mutation p.G303E 0.13 deleterious(0) probably_damaging(0.997) TCGA-HC-7077-01 5 160886666 160886666 C T GABRB2 Missense_Mutation p.R141H 0.17 deleterious(0) probably_damaging(0.999) TCGA-HC-7077-01 6 133138363 133138363 A C RPS12 Intron 0.29 TCGA-HC-7077-01 6 36270248 36270248 T C PNPLA1 Splice_Site p.X462_splice 0.27 TCGA-HC-7077-01 7 155599019 155599019 T C SHH Missense_Mutation p.K178R 0.14 tolerated(0.19) probably_damaging(0.938) TCGA-HC-7077-01 7 43982410 43982410 T - UBE2D4 Intron 0.26 TCGA-HC-7077-01 7 97822262 97822262 G A LMTK2 Missense_Mutation p.V829I 0.33 tolerated(0.2) benign(0.004) TCGA-HC-7077-01 8 110477192 110477192 G A PKHD1L1 Missense_Mutation p.G2711S 0.12 deleterious(0.05) possibly_damaging(0.706) TCGA-HC-7077-01 8 145003714 145003714 C A PLEC Missense_Mutation p.Q1120H 0.14 unknown(0) TCGA-HC-7077-01 8 2830636 2830636 C T CSMD1 Intron 0.61 TCGA-HC-7077-01 8 88885128 88885128 C T DCAF4L2 Missense_Mutation p.A358T 0.33 tolerated(0.63) benign(0.029) TCGA-HC-7077-01 9 101904860 101904860 A G TGFBR1 Missense_Mutation p.H283R 0.11 deleterious(0) probably_damaging(0.941) TCGA-HC-7077-01 9 73152085 73152085 C T TRPM3 Missense_Mutation p.S1303N 0.07 deleterious(0) possibly_damaging(0.763) TCGA-HC-7077-01 X 3228396 3228396 G A MXRA5 Silent p.C2616C 0.46 TCGA-HC-7078-01 10 43622206 43622206 C T RET Intron 0.16 TCGA-HC-7078-01 11 125301354 125301354 G C PKNOX2 3'UTR 0.33 TCGA-HC-7078-01 11 64622147 64622147 C T EHD1 Silent p.P421P 0.08 TCGA-HC-7078-01 11 76893185 76893185 C T MYO7A Silent p.D1031D 0.04 TCGA-HC-7078-01 12 104742131 104742131 G T TXNRD1 Missense_Mutation p.V628L 0.35 tolerated(0.29) benign(0.013) TCGA-HC-7078-01 14 24789053 24789053 G A ADCY4 Silent p.F876F 0.30 TCGA-HC-7078-01 15 22945111 22945111 G A CYFIP1 Silent p.A394A 0.38 TCGA-HC-7078-01 17 37334247 37334247 T C CACNB1 Missense_Mutation p.Q379R 0.35 deleterious(0) probably_damaging(0.986) TCGA-HC-7078-01 17 44116470 44116470 A C KANSL1 Missense_Mutation p.L772R 0.29 deleterious(0.03) benign(0.364) TCGA-HC-7078-01 17 73627271 73627271 C G RECQL5 Missense_Mutation p.E503Q 0.37 tolerated(0.08) benign(0.178) TCGA-HC-7078-01 18 45368305 45368305 T C SMAD2 Missense_Mutation p.S433G 0.63 deleterious(0.01) probably_damaging(0.985) TCGA-HC-7078-01 19 12090948 12090948 C T ZNF763 3'UTR 0.44 TCGA-HC-7078-01 19 2345262 2345262 G C SPPL2B RNA 0.39 TCGA-HC-7078-01 19 23543401 23543401 C A ZNF91 Nonsense_Mutation p.G794* 0.24 TCGA-HC-7078-01 19 40520472 40520472 G A ZNF546 Missense_Mutation p.R432H 0.58 tolerated(0.1) benign(0) TCGA-HC-7078-01 19 42820687 42820687 T C TMEM145 Missense_Mutation p.I234T 0.12 tolerated(0.11) benign(0.109) TCGA-HC-7078-01 19 4538288 4538288 C T LRG1 Silent p.P236P 0.09 TCGA-HC-7078-01 19 50864267 50864267 C T NAPSA Missense_Mutation p.R200Q 0.31 tolerated(0.62) benign(0.013) TCGA-HC-7078-01 1 155255754 155255754 G T HCN3 Silent p.G492G 0.31 TCGA-HC-7078-01 1 33149862 33149862 T C SYNC Missense_Mutation p.Y452C 0.40 deleterious(0) probably_damaging(0.991) TCGA-HC-7078-01 20 48699408 48699408 G A UBE2V1 Missense_Mutation p.S137L 0.42 deleterious(0.01) benign(0.201) TCGA-HC-7078-01 22 19209025 19209025 C T CLTCL1 Missense_Mutation p.E891K 0.21 deleterious(0.03) possibly_damaging(0.79) TCGA-HC-7078-01 22 38822859 38822859 G A KCNJ4 Missense_Mutation p.R427C 0.34 tolerated_low_confidence(0.1) possibly_damaging(0.483) TCGA-HC-7078-01 2 113332905 113332905 C G POLR1B Missense_Mutation p.R1003G 0.30 deleterious(0) probably_damaging(1) TCGA-HC-7078-01 2 130902456 130902456 G C CCDC74B Missense_Mutation p.S38R 0.41 tolerated(0.08) benign(0.339) TCGA-HC-7078-01 2 176981857 176981857 C T HOXD10 Missense_Mutation p.P99L 0.36 deleterious(0.01) probably_damaging(0.94) TCGA-HC-7078-01 2 179648886 179648886 C T TTN Missense_Mutation p.V896I 0.32 TCGA-HC-7078-01 3 121828209 121828209 A T CD86 Silent p.L267L 0.35 TCGA-HC-7078-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.09 deleterious(0.01) probably_damaging(1) TCGA-HC-7078-01 3 43618225 43618225 T C ANO10 Missense_Mutation p.N374S 0.37 deleterious(0.02) possibly_damaging(0.781) TCGA-HC-7078-01 3 46021201 46021201 G A FYCO1 Missense_Mutation p.S95L 0.28 deleterious(0.01) probably_damaging(0.925) TCGA-HC-7078-01 3 97984008 97984008 T C OR5H6 Missense_Mutation p.Y294H 0.33 deleterious(0.01) probably_damaging(1) TCGA-HC-7078-01 4 189060921 189060921 G A TRIML1 Missense_Mutation p.R70H 0.40 deleterious(0.03) benign(0.022) TCGA-HC-7078-01 4 57181439 57181439 G T KIAA1211 Missense_Mutation p.V591F 0.36 deleterious(0) possibly_damaging(0.742) TCGA-HC-7078-01 4 985025 985025 C T SLC26A1 Missense_Mutation p.G156E 0.37 tolerated(0.15) benign(0.001) TCGA-HC-7078-01 5 153144140 153144140 C A GRIA1 Missense_Mutation p.T667K 0.23 deleterious(0) probably_damaging(0.974) TCGA-HC-7078-01 6 32020750 32020750 C T TNXB Missense_Mutation p.A2936T 0.32 benign(0.001) TCGA-HC-7078-01 9 125377695 125377695 C T OR1Q1 Missense_Mutation p.R227W 0.08 deleterious(0.01) benign(0.013) TCGA-HC-7078-01 X 140785743 140785743 T A SPANXD Missense_Mutation p.N58I 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.601) TCGA-HC-7078-01 X 30714731 30714731 C T GK Intron 0.14 TCGA-HC-7080-01 10 103906651 103906651 G A PPRC1 Missense_Mutation p.R1301Q 0.53 deleterious(0.02) possibly_damaging(0.827) TCGA-HC-7080-01 10 73047379 73047379 C T UNC5B Missense_Mutation p.A253V 0.38 deleterious(0.01) benign(0.099) TCGA-HC-7080-01 11 118516357 118516357 C T PHLDB1 Silent p.D1135D 0.38 TCGA-HC-7080-01 12 675072 675072 C T NINJ2 Intron 0.25 TCGA-HC-7080-01 13 113732744 113732744 G A MCF2L Silent p.R576R 0.34 TCGA-HC-7080-01 14 105421875 105421875 G A AHNAK2 Silent p.F137F 0.25 TCGA-HC-7080-01 16 11076736 11076738 TCT - CLEC16A In_Frame_Del p.F321del 0.35 TCGA-HC-7080-01 16 55363122 55363122 G T IRX6 Missense_Mutation p.G411V 0.38 deleterious(0.03) benign(0.059) TCGA-HC-7080-01 16 88904133 88904133 C T GALNS Missense_Mutation p.G155R 0.43 deleterious(0) probably_damaging(1) TCGA-HC-7080-01 16 89805522 89805522 G T FANCA Intron 0.24 TCGA-HC-7080-01 17 47696431 47696431 C G SPOP Missense_Mutation p.W131S 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-HC-7080-01 19 36234735 36234735 G A U2AF1L4 Silent p.S126S 0.35 TCGA-HC-7080-01 19 42092919 42092919 G A CEACAM21 3'Flank 0.56 TCGA-HC-7080-01 19 49107168 49107168 G A FAM83E Silent p.S253S 0.41 TCGA-HC-7080-01 19 51412631 51412631 C T KLK4 Missense_Mutation p.G34D 0.46 deleterious(0) possibly_damaging(0.905) TCGA-HC-7080-01 19 51453323 51453323 G A KLK5 Silent p.T41T 0.45 TCGA-HC-7080-01 1 117552477 117552477 C T CD101 Missense_Mutation p.L17F 0.41 deleterious(0.03) benign(0.092) TCGA-HC-7080-01 1 152325488 152325488 G T FLG2 Missense_Mutation p.P1592T 0.17 benign(0.121) TCGA-HC-7080-01 1 152659383 152659383 C T LCE2B Missense_Mutation p.P22S 0.68 deleterious_low_confidence(0) unknown(0) TCGA-HC-7080-01 1 181767512 181767512 G A CACNA1E Missense_Mutation p.V2162I 0.71 deleterious(0.02) possibly_damaging(0.796) TCGA-HC-7080-01 1 202205107 202205107 G A LGR6 Silent p.P138P 0.06 TCGA-HC-7080-01 20 32878543 32878543 T C AHCY Missense_Mutation p.M254V 0.45 tolerated_low_confidence(0.05) possibly_damaging(0.522) TCGA-HC-7080-01 20 62664373 62664373 G T PRPF6 3'UTR 0.54 TCGA-HC-7080-01 22 42024154 42024155 - T XRCC6 Frame_Shift_Ins p.L41Ffs*3 0.44 TCGA-HC-7080-01 2 100203740 100203740 A G AFF3 Missense_Mutation p.C848R 0.40 tolerated(0.13) benign(0.15) TCGA-HC-7080-01 2 170667531 170667531 C - SSB Frame_Shift_Del p.L326* 0.43 TCGA-HC-7080-01 2 198267739 198267739 C T SF3B1 Silent p.P580P 0.43 TCGA-HC-7080-01 2 238671963 238671963 G A LRRFIP1 Missense_Mutation p.S536N 0.44 tolerated(0.18) benign(0.184) TCGA-HC-7080-01 3 107491592 107491592 A G BBX Missense_Mutation p.M342V 0.44 tolerated(0.58) benign(0) TCGA-HC-7080-01 3 13896275 13896275 G A WNT7A Silent p.Y108Y 0.46 TCGA-HC-7080-01 3 46491405 46491405 C A LTF Missense_Mutation p.R332S 0.52 tolerated(0.2) benign(0.044) TCGA-HC-7080-01 4 189061023 189061023 C T TRIML1 Missense_Mutation p.A104V 0.35 tolerated(0.58) benign(0.001) TCGA-HC-7080-01 5 140229692 140229692 C T PCDHA9 Missense_Mutation p.R538C 0.44 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-HC-7080-01 6 136599103 136599103 C T BCLAF1 Missense_Mutation p.A306T 0.15 tolerated(1) benign(0.001) TCGA-HC-7080-01 6 139695051 139695051 C A CITED2 Missense_Mutation p.G11W 0.51 deleterious(0) probably_damaging(0.996) TCGA-HC-7080-01 6 7373784 7373784 C T CAGE1 Missense_Mutation p.R423K 0.45 tolerated(0.24) possibly_damaging(0.87) TCGA-HC-7080-01 8 87549807 87549807 C A CPNE3 Nonsense_Mutation p.S159* 0.37 TCGA-HC-7080-01 9 138557738 138557738 G A LCN9 Silent p.P169P 0.43 TCGA-HC-7081-01 11 118959361 118959361 C T HMBS Missense_Mutation p.T35M 0.14 deleterious(0) probably_damaging(1) TCGA-HC-7081-01 11 62649502 62649502 G A SLC3A2 Missense_Mutation p.D290N 0.21 deleterious(0) possibly_damaging(0.899) TCGA-HC-7081-01 12 104192373 104192374 AA - NT5DC3 Frame_Shift_Del p.F202Lfs*30 0.13 TCGA-HC-7081-01 14 105354172 105354172 G A CEP170B Missense_Mutation p.S1199N 0.71 tolerated(0.12) possibly_damaging(0.535) TCGA-HC-7081-01 16 24801364 24801364 C T TNRC6A Silent p.S467S 0.09 TCGA-HC-7081-01 17 8731970 8731970 G A PIK3R6 Silent p.G409G 0.11 TCGA-HC-7081-01 19 14006305 14006305 T G C19orf57 Missense_Mutation p.Y29S 0.03 tolerated(0.16) benign(0) TCGA-HC-7081-01 19 18278049 18278049 G T PIK3R2 Missense_Mutation p.D557Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-HC-7081-01 19 37440624 37440627 ACTT - ZNF568 Frame_Shift_Del p.L192Dfs*7 0.30 TCGA-HC-7081-01 19 39995921 39995921 G A DLL3 Missense_Mutation p.R308Q 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-HC-7081-01 19 51217187 51217187 C T SHANK1 Silent p.A220A 0.24 TCGA-HC-7081-01 19 56363700 56363700 G T NLRP4 Missense_Mutation p.C85F 0.29 tolerated(0.19) benign(0.411) TCGA-HC-7081-01 1 1325908 1325908 C G CCNL2 Missense_Mutation p.L265F 0.21 deleterious(0) probably_damaging(1) TCGA-HC-7081-01 1 179437608 179437608 G A AXDND1 Missense_Mutation p.S610N 0.07 tolerated(0.39) benign(0) TCGA-HC-7081-01 1 181708361 181708361 G A CACNA1E Missense_Mutation p.V1231I 0.25 tolerated(0.34) possibly_damaging(0.699) TCGA-HC-7081-01 1 183534901 183534901 G A NCF2 Missense_Mutation p.P313L 0.17 tolerated(0.49) benign(0.003) TCGA-HC-7081-01 1 39747939 39747939 C T MACF1 Silent p.L201L 0.07 TCGA-HC-7081-01 22 38481290 38481290 C T BAIAP2L2 3'UTR 0.33 TCGA-HC-7081-01 22 50480096 50480096 C T TTLL8 Missense_Mutation p.E298K 0.14 deleterious(0.05) possibly_damaging(0.521) TCGA-HC-7081-01 2 27682634 27682634 C T IFT172 Missense_Mutation p.D862N 0.08 tolerated(0.12) possibly_damaging(0.903) TCGA-HC-7081-01 3 112198518 112198518 A G BTLA Missense_Mutation p.C63R 0.38 deleterious(0) probably_damaging(1) TCGA-HC-7081-01 3 178936083 178936083 A C PIK3CA Missense_Mutation p.E542A 0.08 deleterious(0.04) probably_damaging(0.914) TCGA-HC-7081-01 3 3189849 3189849 T C TRNT1 3'UTR 0.09 TCGA-HC-7081-01 4 100503185 100503185 A G MTTP Missense_Mutation p.N62S 0.23 tolerated(0.73) benign(0.004) TCGA-HC-7081-01 5 140503800 140503800 C A PCDHB4 Silent p.G740G 0.31 TCGA-HC-7081-01 6 47200572 47200572 C A TNFRSF21 Nonsense_Mutation p.G633* 0.27 TCGA-HC-7081-01 6 84644322 84644322 T C CYB5R4 Missense_Mutation p.Y275H 0.41 deleterious(0) possibly_damaging(0.841) TCGA-HC-7081-01 7 143793017 143793017 C T OR2A12 Missense_Mutation p.L273F 0.27 deleterious(0.03) possibly_damaging(0.466) TCGA-HC-7081-01 7 154875945 154875945 G A HTR5A Silent p.T274T 0.23 TCGA-HC-7081-01 7 18975506 18975506 G T HDAC9 Missense_Mutation p.D960Y 0.08 deleterious(0) probably_damaging(0.998) TCGA-HC-7081-01 7 91864869 91864869 G A KRIT1 Missense_Mutation p.P193S 0.07 deleterious(0.01) probably_damaging(0.962) TCGA-HC-7081-01 7 94037158 94037158 G A COL1A2 Splice_Site p.X199_splice 0.14 TCGA-HC-7081-01 9 112899835 112899835 G A PALM2-AKAP2 Missense_Mutation p.A671T 0.27 deleterious(0.01) possibly_damaging(0.508) TCGA-HC-7081-01 X 55651014 55651014 T G FOXR2 Silent p.A290A 0.49 TCGA-HC-7209-01 10 13483733 13483733 C A BEND7 Intron 0.34 TCGA-HC-7209-01 10 88447004 88447004 C T LDB3 Nonsense_Mutation p.Q290* 0.19 TCGA-HC-7209-01 12 123746202 123746202 G C CDK2AP1 3'UTR 0.24 TCGA-HC-7209-01 12 53400150 53400150 T A EIF4B 5'UTR 0.21 TCGA-HC-7209-01 14 105408253 105408253 C T AHNAK2 Missense_Mutation p.R4512H 0.29 probably_damaging(0.921) TCGA-HC-7209-01 14 23370938 23370938 T A RBM23 3'UTR 0.26 TCGA-HC-7209-01 14 91655506 91655506 T G C14orf159 Missense_Mutation p.V396G 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-HC-7209-01 14 97031433 97031433 T C PAPOLA 3'UTR 0.16 TCGA-HC-7209-01 15 73996665 73996665 C A CD276 Missense_Mutation p.N407K 0.24 tolerated(0.13) probably_damaging(0.94) TCGA-HC-7209-01 15 91450694 91450694 C T MAN2A2 Missense_Mutation p.R389W 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-HC-7209-01 18 21134925 21134925 G T NPC1 Silent p.I450I 0.23 TCGA-HC-7209-01 18 34802090 34802090 G T KIAA1328 Missense_Mutation p.R545L 0.19 deleterious(0.03) benign(0.003) TCGA-HC-7209-01 19 19645880 19645880 C T YJEFN3 Missense_Mutation p.T119M 0.31 tolerated(0.07) possibly_damaging(0.56) TCGA-HC-7209-01 1 152975781 152975781 G A SPRR3 Silent p.E95E 0.33 TCGA-HC-7209-01 20 2842496 2842496 G A VPS16 Silent p.G315G 0.25 TCGA-HC-7209-01 2 179463271 179463271 C T TTN Missense_Mutation p.V19025I 0.40 TCGA-HC-7209-01 2 219341590 219341590 G T USP37 Missense_Mutation p.N672K 0.28 tolerated(0.72) benign(0.001) TCGA-HC-7209-01 3 39450137 39450137 T G RPSA Silent p.L58L 0.25 TCGA-HC-7209-01 3 71037204 71037204 G A FOXP1 Nonsense_Mutation p.Q365* 0.29 TCGA-HC-7209-01 4 159549858 159549858 A - RXFP1 Frame_Shift_Del p.E299Dfs*4 0.28 TCGA-HC-7209-01 4 38798749 38798749 C T TLR1 Silent p.K568K 0.22 TCGA-HC-7209-01 6 564561 564561 C T EXOC2 Missense_Mutation p.A551T 0.23 tolerated(0.12) benign(0.011) TCGA-HC-7209-01 7 100084560 100084560 C T NYAP1 Missense_Mutation p.T62M 0.28 deleterious(0) probably_damaging(0.999) TCGA-HC-7209-01 7 103179597 103179597 C T RELN Missense_Mutation p.V2370I 0.14 tolerated(1) benign(0.001) TCGA-HC-7209-01 9 133753877 133753877 A G ABL1 Missense_Mutation p.Y468C 0.25 deleterious(0) probably_damaging(1) TCGA-HC-7209-01 X 134654854 134654854 G A DDX26B 5'UTR 0.09 TCGA-HC-7209-01 X 1501315 1501315 A G IL3RA Missense_Mutation p.E365G 0.15 deleterious(0) probably_damaging(0.966) TCGA-HC-7210-01 10 127441484 127441484 G C EDRF1 Splice_Site p.X1131_splice 0.38 TCGA-HC-7210-01 10 135015083 135015083 A G KNDC1 Missense_Mutation p.D1023G 0.17 deleterious(0.05) benign(0.434) TCGA-HC-7210-01 10 408505 408505 G A DIP2C Silent p.L907L 0.18 TCGA-HC-7210-01 10 52603796 52603796 T - A1CF Frame_Shift_Del p.K70Nfs*24 0.24 TCGA-HC-7210-01 12 121790158 121790173 AAGTCTCGGGCCCGCG TA ANAPC5 5'UTR 0.26 TCGA-HC-7210-01 12 46245168 46245168 A - ARID2 Frame_Shift_Del p.N1088Ifs*68 0.19 TCGA-HC-7210-01 12 52863587 52863587 C T KRT6C Missense_Mutation p.E431K 0.21 deleterious(0.02) possibly_damaging(0.773) TCGA-HC-7210-01 14 105416337 105416337 A C AHNAK2 Silent p.T1817T 0.47 TCGA-HC-7210-01 14 38061220 38061228 CGTTCTCGA - FOXA1 In_Frame_Del p.F254_G257delinsC 0.23 TCGA-HC-7210-01 15 34137219 34137219 A G RYR3 Missense_Mutation p.T4485A 0.17 benign(0.297) TCGA-HC-7210-01 15 73029880 73029880 G A BBS4 Silent p.A504A 0.27 TCGA-HC-7210-01 16 27078584 27078584 G A C16orf82 RNA 0.48 TCGA-HC-7210-01 16 314964 314964 C T ITFG3 Silent p.D534D 0.17 TCGA-HC-7210-01 17 67016632 67016632 T - ABCA9 Frame_Shift_Del p.R833Gfs*17 0.18 TCGA-HC-7210-01 18 57020490 57020490 G T LMAN1 Missense_Mutation p.R195S 0.18 deleterious(0) probably_damaging(0.999) TCGA-HC-7210-01 1 101198104 101198104 C T VCAM1 Silent p.N552N 0.19 TCGA-HC-7210-01 1 1431203 1431203 G A ATAD3B 3'UTR 0.26 TCGA-HC-7210-01 1 169489881 169489881 C T F5 Missense_Mutation p.A2024T 0.15 deleterious(0) probably_damaging(0.959) TCGA-HC-7210-01 1 200944676 200944676 C T KIF21B Missense_Mutation p.R1522Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-HC-7210-01 1 37941263 37941263 C T ZC3H12A Missense_Mutation p.R56W 0.17 deleterious(0) probably_damaging(0.996) TCGA-HC-7210-01 1 48764299 48764299 A T SPATA6 3'UTR 0.35 TCGA-HC-7210-01 1 52941095 52941095 C G ZCCHC11 Silent p.T712T 0.21 TCGA-HC-7210-01 1 8025453 8025453 C G PARK7 Missense_Mutation p.P54A 0.24 tolerated(0.12) benign(0.14) TCGA-HC-7210-01 22 50217248 50217248 C T BRD1 Missense_Mutation p.A240T 0.29 deleterious(0) probably_damaging(0.99) TCGA-HC-7210-01 2 216211488 216211488 G A ATIC Missense_Mutation p.G443S 0.20 deleterious(0) probably_damaging(0.997) TCGA-HC-7210-01 2 235405080 235405080 T A ARL4C Nonsense_Mutation p.K51* 0.20 TCGA-HC-7210-01 2 27822524 27822524 C T ZNF512 Nonsense_Mutation p.Q118* 0.17 TCGA-HC-7210-01 2 32712725 32712725 C A BIRC6 Missense_Mutation p.P2609T 0.21 benign(0.001) TCGA-HC-7210-01 3 193380716 193380716 C G OPA1 Missense_Mutation p.L858V 0.21 tolerated(0.06) benign(0.265) TCGA-HC-7210-01 3 32571120 32571120 T G DYNC1LI1 Silent p.P406P 0.21 TCGA-HC-7210-01 4 129121699 129121699 C T LARP1B Nonsense_Mutation p.Q730* 0.35 TCGA-HC-7210-01 4 144466687 144466687 A T SMARCA5 Missense_Mutation p.E783V 0.20 tolerated(0.08) benign(0.247) TCGA-HC-7210-01 4 48371866 48371866 G T SLAIN2 Missense_Mutation p.W130C 0.21 deleterious(0) probably_damaging(0.99) TCGA-HC-7210-01 4 90034422 90034422 A G TIGD2 Silent p.G99G 0.08 TCGA-HC-7210-01 5 127710364 127710364 A G FBN2 Silent p.C684C 0.24 TCGA-HC-7210-01 6 35927511 35927511 T C SLC26A8 Missense_Mutation p.K571E 0.18 deleterious(0.03) possibly_damaging(0.651) TCGA-HC-7210-01 7 103180802 103180802 A G RELN Missense_Mutation p.W2258R 0.17 deleterious(0.01) probably_damaging(1) TCGA-HC-7210-01 7 105660967 105660967 C T CDHR3 Missense_Mutation p.S601F 0.22 deleterious(0) probably_damaging(0.991) TCGA-HC-7210-01 7 120455842 120455842 G A TSPAN12 Missense_Mutation p.L101F 0.12 deleterious(0.01) probably_damaging(0.961) TCGA-HC-7210-01 7 139285234 139285234 G A HIPK2 Silent p.A788A 0.18 TCGA-HC-7210-01 7 70252229 70252229 C A AUTS2 Silent p.P781P 0.26 TCGA-HC-7210-01 9 123367897 123367897 T C MEGF9 Silent p.E460E 0.25 TCGA-HC-7210-01 9 139091725 139091725 G A LHX3 Missense_Mutation p.R90C 0.30 deleterious(0.02) possibly_damaging(0.679) TCGA-HC-7210-01 X 129518743 129518743 C G GPR119 Missense_Mutation p.V227L 0.56 deleterious(0) benign(0.296) TCGA-HC-7211-01 10 105133312 105133312 T A TAF5 Missense_Mutation p.Y253N 0.34 tolerated(0.07) probably_damaging(0.984) TCGA-HC-7211-01 12 121458254 121458254 A G OASL 3'UTR 0.12 TCGA-HC-7211-01 13 38320195 38320195 G A TRPC4 Missense_Mutation p.T259M 0.31 deleterious(0) probably_damaging(0.994) TCGA-HC-7211-01 14 105420975 105420975 C A AHNAK2 Silent p.R271R 0.29 TCGA-HC-7211-01 15 25442635 25442635 G T SNORD115-14 3'Flank 0.32 TCGA-HC-7211-01 15 48905245 48905245 C G FBN1 Missense_Mutation p.G70A 0.10 probably_damaging(0.995) TCGA-HC-7211-01 17 19648303 19648303 G C ALDH3A1 Missense_Mutation p.A47G 0.15 deleterious(0.01) possibly_damaging(0.871) TCGA-HC-7211-01 17 33903106 33903107 - C PEX12 Frame_Shift_Ins p.Q259Afs*4 0.34 TCGA-HC-7211-01 17 34072984 34072984 C T GAS2L2 Missense_Mutation p.R511H 0.25 tolerated(0.19) benign(0.002) TCGA-HC-7211-01 19 51512439 51512439 G A KLK9 Missense_Mutation p.P67L 0.12 tolerated(0.1) possibly_damaging(0.458) TCGA-HC-7211-01 19 55898050 55898050 A T RPL28 Missense_Mutation p.K65M 0.28 deleterious(0) probably_damaging(0.999) TCGA-HC-7211-01 1 203691620 203691620 G A ATP2B4 Missense_Mutation p.D943N 0.27 tolerated(0.21) benign(0.025) TCGA-HC-7211-01 1 228466409 228466409 G A OBSCN Silent p.V2722V 0.10 TCGA-HC-7211-01 1 247151356 247151356 T C ZNF695 Missense_Mutation p.K154R 0.09 deleterious(0.01) probably_damaging(0.917) TCGA-HC-7211-01 1 6166702 6166702 G A CHD5 Missense_Mutation p.R1906C 0.29 deleterious(0) benign(0.34) TCGA-HC-7211-01 1 79470893 79470893 T A ELTD1 Missense_Mutation p.T12S 0.30 tolerated_low_confidence(0.48) benign(0.004) TCGA-HC-7211-01 20 25201904 25201904 C T ENTPD6 Missense_Mutation p.S327F 0.32 deleterious(0) possibly_damaging(0.811) TCGA-HC-7211-01 22 20922879 20922879 G C MED15 Missense_Mutation p.Q371H 0.22 tolerated_low_confidence(0.19) unknown(0) TCGA-HC-7211-01 2 119915213 119915213 C T C1QL2 Missense_Mutation p.M211I 0.33 deleterious(0.04) benign(0.345) TCGA-HC-7211-01 2 152235947 152235947 T C TNFAIP6 Missense_Mutation p.V245A 0.08 tolerated(1) benign(0.001) TCGA-HC-7211-01 2 60689483 60689483 G A BCL11A Silent p.H188H 0.28 TCGA-HC-7211-01 3 12845003 12845003 G T CAND2 Missense_Mutation p.D29Y 0.04 deleterious(0) probably_damaging(1) TCGA-HC-7211-01 4 41983829 41983829 G A DCAF4L1 Missense_Mutation p.R7Q 0.05 tolerated(1) unknown(0) TCGA-HC-7211-01 5 130766933 130766933 G A RAPGEF6 Missense_Mutation p.R1370C 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HC-7211-01 6 25538149 25538149 G A LRRC16A Missense_Mutation p.A712T 0.16 tolerated(0.2) benign(0.003) TCGA-HC-7211-01 6 85457764 85457764 G A TBX18 Silent p.H271H 0.09 TCGA-HC-7211-01 8 28207657 28207657 T C ZNF395 Missense_Mutation p.Q417R 0.15 tolerated(0.16) probably_damaging(0.997) TCGA-HC-7211-01 8 62538771 62538771 C T ASPH Intron 0.27 TCGA-HC-7212-01 10 1142152 1142152 A G WDR37 Missense_Mutation p.Q231R 0.10 tolerated(0.29) possibly_damaging(0.775) TCGA-HC-7212-01 10 12595224 12595224 C T CAMK1D Silent p.T31T 0.06 TCGA-HC-7212-01 10 89720833 89720833 A - PTEN Frame_Shift_Del p.N329Ifs*15 0.18 TCGA-HC-7212-01 11 33037510 33037510 C G DEPDC7 Silent p.T3T 0.25 TCGA-HC-7212-01 11 562264 562264 G A RASSF7 Missense_Mutation p.E104K 0.08 deleterious(0) probably_damaging(0.998) TCGA-HC-7212-01 11 5632556 5632556 G A TRIM6 Missense_Mutation p.R512H 0.07 deleterious(0) possibly_damaging(0.781) TCGA-HC-7212-01 13 47469888 47469888 G A HTR2A Nonsense_Mutation p.R52* 0.08 TCGA-HC-7212-01 14 38679035 38679035 T A SSTR1 Nonsense_Mutation p.C147* 0.03 TCGA-HC-7212-01 15 90447061 90447061 G A C15orf38-AP3S2 Silent p.L152L 0.34 TCGA-HC-7212-01 16 55363026 55363026 G A IRX6 Missense_Mutation p.R379H 0.05 tolerated(0.94) benign(0) TCGA-HC-7212-01 17 15971376 15971376 G A NCOR1 Nonsense_Mutation p.Q1525* 0.21 TCGA-HC-7212-01 17 42458366 42458366 C A ITGA2B Missense_Mutation p.G425V 0.34 deleterious(0) probably_damaging(1) TCGA-HC-7212-01 17 44145009 44145009 C A KANSL1 Nonsense_Mutation p.E520* 0.09 TCGA-HC-7212-01 17 63200388 63200388 C T RGS9 Missense_Mutation p.A391V 0.09 deleterious(0) probably_damaging(1) TCGA-HC-7212-01 17 66267073 66267073 C T SLC16A6 Missense_Mutation p.D410N 0.08 deleterious(0) possibly_damaging(0.87) TCGA-HC-7212-01 17 72926528 72926528 T C OTOP2 Silent p.G266G 0.31 TCGA-HC-7212-01 17 7806622 7806622 C T CHD3 Silent p.A1235A 0.08 TCGA-HC-7212-01 19 10131942 10131942 T C RDH8 Missense_Mutation p.V203A 0.07 deleterious(0) probably_damaging(0.937) TCGA-HC-7212-01 19 14208444 14208444 A C PRKACA Missense_Mutation p.W197G 0.13 deleterious(0) probably_damaging(0.976) TCGA-HC-7212-01 19 17397230 17397230 G A ANKLE1 Missense_Mutation p.G573R 0.05 deleterious(0) probably_damaging(0.999) TCGA-HC-7212-01 1 12331156 12331156 A G VPS13D Missense_Mutation p.D693G 0.34 probably_damaging(0.99) TCGA-HC-7212-01 1 9085108 9085108 G A SLC2A7 Missense_Mutation p.A26V 0.07 tolerated(0.32) benign(0.035) TCGA-HC-7212-01 20 58470533 58470533 T C SYCP2 Missense_Mutation p.R542G 0.25 tolerated(0.38) possibly_damaging(0.625) TCGA-HC-7212-01 22 30185114 30185114 C T ASCC2 Missense_Mutation p.R721H 0.03 deleterious(0.02) possibly_damaging(0.701) TCGA-HC-7212-01 2 48809003 48809003 G A STON1-GTF2A1L Missense_Mutation p.E411K 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-HC-7212-01 2 80529775 80529775 C T LRRTM1 Silent p.S390S 0.09 TCGA-HC-7212-01 3 178546107 178546108 - G KCNMB2 Frame_Shift_Ins p.E125Gfs*23 0.10 TCGA-HC-7212-01 3 41266112 41266112 T G CTNNB1 Missense_Mutation p.S37A 0.09 deleterious(0) possibly_damaging(0.844) TCGA-HC-7212-01 3 50332378 50332378 C T HYAL3 Missense_Mutation p.R219H 0.21 tolerated(0.66) benign(0.01) TCGA-HC-7212-01 5 134785319 134785319 C T TIFAB Missense_Mutation p.R104K 0.09 tolerated(0.82) benign(0.016) TCGA-HC-7212-01 7 100031160 100031160 C T MEPCE Nonsense_Mutation p.R685* 0.06 TCGA-HC-7212-01 7 108524126 108524126 G A C7orf66 Missense_Mutation p.R96W 0.16 deleterious_low_confidence(0.02) benign(0.14) TCGA-HC-7212-01 7 16640446 16640446 G A ANKMY2 Silent p.S422S 0.07 TCGA-HC-7212-01 8 1645355 1645355 G A DLGAP2 Missense_Mutation p.G867S 0.08 deleterious(0) probably_damaging(1) TCGA-HC-7212-01 8 41529904 41529904 G A ANK1 Silent p.T1729T 0.06 TCGA-HC-7212-01 9 130191138 130191138 C T ZNF79 Missense_Mutation p.P15L 0.22 tolerated(0.78) benign(0) TCGA-HC-7212-01 X 106312568 106312568 C T RBM41 Missense_Mutation p.R331Q 0.80 deleterious(0) probably_damaging(0.999) TCGA-HC-7212-01 X 44966780 44966783 AAGT - KDM6A Splice_Site p.X1335_splice 0.35 TCGA-HC-7213-01 10 106976777 106976777 C T SORCS3 Silent p.D877D 0.10 TCGA-HC-7213-01 10 129899951 129899951 G A MKI67 Silent p.R3092R 0.08 TCGA-HC-7213-01 10 27692213 27692213 C T PTCHD3 Missense_Mutation p.G429S 0.08 tolerated(0.76) benign(0.067) TCGA-HC-7213-01 10 3182881 3182881 G A PITRM1 Silent p.Y924Y 0.27 TCGA-HC-7213-01 11 105009575 105009575 C A CARD18 Missense_Mutation p.D80Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-HC-7213-01 11 125450015 125450015 C A EI24 Silent p.I196I 0.37 TCGA-HC-7213-01 11 132177694 132177694 G A NTM Missense_Mutation p.R213Q 0.19 tolerated(0.55) benign(0.08) TCGA-HC-7213-01 11 6048456 6048456 G A OR56A1 Missense_Mutation p.A160V 0.07 tolerated(0.61) benign(0.007) TCGA-HC-7213-01 11 65652991 65652991 G A FIBP Missense_Mutation p.P219L 0.07 tolerated(0.33) benign(0.001) TCGA-HC-7213-01 12 57436930 57436930 G A MYO1A Missense_Mutation p.R342W 0.05 deleterious(0) probably_damaging(0.997) TCGA-HC-7213-01 15 48058097 48058097 G T SEMA6D Missense_Mutation p.V487F 0.35 deleterious(0) possibly_damaging(0.774) TCGA-HC-7213-01 16 61891049 61891049 G T CDH8 Missense_Mutation p.P214H 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-HC-7213-01 17 18863892 18863892 G A SLC5A10 Missense_Mutation p.R127H 0.04 deleterious(0) probably_damaging(1) TCGA-HC-7213-01 17 7096378 7096378 C T DLG4 Silent p.S627S 0.56 TCGA-HC-7213-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.63 TCGA-HC-7213-01 17 80046850 80046850 G T FASN Missense_Mutation p.L767M 0.37 deleterious(0) probably_damaging(0.99) TCGA-HC-7213-01 18 18625328 18625328 T C ROCK1 Missense_Mutation p.E172G 0.57 deleterious(0.01) possibly_damaging(0.746) TCGA-HC-7213-01 19 15163041 15163041 G T CASP14 5'UTR 0.10 TCGA-HC-7213-01 19 37677690 37677690 G A ZNF585B Missense_Mutation p.A250V 0.07 tolerated(0.11) benign(0.343) TCGA-HC-7213-01 19 43708257 43708257 G T PSG4 Missense_Mutation p.Q71K 0.31 tolerated(0.1) benign(0.034) TCGA-HC-7213-01 19 8668748 8668748 G A ADAMTS10 Silent p.D152D 0.19 TCGA-HC-7213-01 19 9005698 9005698 G A MUC16 Silent p.D13236D 0.42 TCGA-HC-7213-01 1 21564710 21564710 C A ECE1 Missense_Mutation p.V436L 0.08 tolerated(0.06) benign(0.208) TCGA-HC-7213-01 1 76397716 76397716 G A ASB17 Silent p.L87L 0.37 TCGA-HC-7213-01 1 91859724 91859724 C G HFM1 Missense_Mutation p.K140N 0.22 tolerated_low_confidence(0.32) benign(0.003) TCGA-HC-7213-01 21 47971767 47971767 C T DIP2A Missense_Mutation p.R994C 0.14 deleterious(0) benign(0.183) TCGA-HC-7213-01 2 170885949 170885949 T A UBR3 Missense_Mutation p.M1516K 0.27 tolerated(0.92) benign(0) TCGA-HC-7213-01 2 228881544 228881544 C T SPHKAP Silent p.S1342S 0.13 TCGA-HC-7213-01 2 63282957 63282957 G A OTX1 Missense_Mutation p.V191M 0.17 tolerated(0.22) unknown(0) TCGA-HC-7213-01 2 74783766 74783766 C G DOK1 Missense_Mutation p.A324G 0.19 tolerated(0.28) benign(0.05) TCGA-HC-7213-01 3 146246434 146246434 T C PLSCR1 Silent p.L93L 0.38 TCGA-HC-7213-01 3 146307581 146307581 C T PLSCR5 Silent p.K212K 0.05 TCGA-HC-7213-01 3 183778109 183778109 T A HTR3C Missense_Mutation p.I438N 0.34 deleterious(0) possibly_damaging(0.853) TCGA-HC-7213-01 3 49935036 49935036 C T MST1R Missense_Mutation p.V655I 0.05 tolerated(0.76) benign(0.123) TCGA-HC-7213-01 3 9754286 9754286 C T CPNE9 Missense_Mutation p.R147W 0.36 deleterious(0) probably_damaging(0.932) TCGA-HC-7213-01 4 115856461 115856461 G T NDST4 Missense_Mutation p.F479L 0.31 deleterious(0) probably_damaging(0.982) TCGA-HC-7213-01 4 123091780 123091780 G A KIAA1109 5'UTR 0.56 TCGA-HC-7213-01 4 2757685 2757685 G C TNIP2 Intron 0.18 TCGA-HC-7213-01 4 76532380 76532380 C T CDKL2 Missense_Mutation p.V177I 0.42 tolerated(0.28) benign(0.001) TCGA-HC-7213-01 5 114513401 114513401 C A TRIM36 Intron 0.05 TCGA-HC-7213-01 5 137892208 137892209 TT - HSPA9 Frame_Shift_Del p.N632Yfs*2 0.34 TCGA-HC-7213-01 5 140242415 140242415 C T AC005609.1 Silent p.A187A 0.20 TCGA-HC-7213-01 5 7414748 7414748 G A ADCY2 Silent p.A91A 0.04 TCGA-HC-7213-01 6 160328313 160328313 C T MAS1 Missense_Mutation p.S109L 0.27 tolerated(0.53) benign(0.055) TCGA-HC-7213-01 6 36566669 36566670 - A SRSF3 Frame_Shift_Ins p.R86Kfs*3 0.20 TCGA-HC-7213-01 6 75812377 75812377 G A COL12A1 Missense_Mutation p.P2784L 0.55 benign(0.083) TCGA-HC-7213-01 7 150174547 150174547 C T GIMAP8 Silent p.Y559Y 0.06 TCGA-HC-7213-01 8 101154018 101154018 C T FBXO43 Missense_Mutation p.R155H 0.41 deleterious(0) probably_damaging(0.971) TCGA-HC-7213-01 8 85097149 85097149 A T RALYL 5'UTR 0.37 TCGA-HC-7213-01 9 132397600 132397600 G T NTMT1 Missense_Mutation p.D177Y 0.33 deleterious(0) probably_damaging(1) TCGA-HC-7213-01 X 27766321 27766321 C A DCAF8L2 Missense_Mutation p.L437M 0.08 deleterious(0.01) possibly_damaging(0.692) TCGA-HC-7230-01 10 89692849 89692849 G A PTEN Nonsense_Mutation p.W111* 0.16 TCGA-HC-7230-01 11 123516294 123516294 C T SCN3B Splice_Site p.X73_splice 0.34 TCGA-HC-7230-01 11 36597480 36597480 G A RAG1 Missense_Mutation p.E876K 0.33 deleterious_low_confidence(0.04) benign(0.001) TCGA-HC-7230-01 11 55594795 55594795 T C OR5L2 Missense_Mutation p.I34T 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-HC-7230-01 11 65423213 65423213 G A RELA Missense_Mutation p.P327S 0.46 tolerated(0.47) benign(0.001) TCGA-HC-7230-01 12 52881722 52881722 C T KRT6A Missense_Mutation p.V493I 0.65 tolerated(0.19) benign(0.003) TCGA-HC-7230-01 13 39587196 39587196 G A PROSER1 Silent p.T731T 0.06 TCGA-HC-7230-01 14 106208446 106208446 C T IGHG1 Missense_Mutation p.E152K 0.04 deleterious(0.02) benign(0.399) TCGA-HC-7230-01 14 73459968 73459968 C T ZFYVE1 Silent p.T362T 0.41 TCGA-HC-7230-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.55 deleterious(0) probably_damaging(1) TCGA-HC-7230-01 19 20828105 20828105 G A ZNF626 Intron 0.12 TCGA-HC-7230-01 19 36636739 36636739 A C CAPNS1 Missense_Mutation p.E163A 0.35 deleterious(0) probably_damaging(1) TCGA-HC-7230-01 19 41174032 41174032 A G NUMBL Missense_Mutation p.W391R 0.12 deleterious(0.01) probably_damaging(0.969) TCGA-HC-7230-01 19 45911967 45911967 G A CD3EAP Silent p.P247P 0.40 TCGA-HC-7230-01 19 47217263 47217263 G - PRKD2 Intron 0.27 TCGA-HC-7230-01 19 52272719 52272719 G A FPR2 Missense_Mutation p.E270K 0.38 tolerated(0.09) benign(0.073) TCGA-HC-7230-01 19 53209167 53209167 G A ZNF611 Missense_Mutation p.R381W 0.06 tolerated(0.15) possibly_damaging(0.802) TCGA-HC-7230-01 1 108023234 108023234 G A NTNG1 Silent p.P464P 0.21 TCGA-HC-7230-01 1 64515405 64515405 C T ROR1 Missense_Mutation p.T69M 0.13 tolerated(0.07) probably_damaging(0.941) TCGA-HC-7230-01 21 27840931 27840931 G A CYYR1 Silent p.H118H 0.41 TCGA-HC-7230-01 21 43967227 43967227 A C SLC37A1 Silent p.R249R 0.18 TCGA-HC-7230-01 2 112786452 112786452 G C MERTK 3'UTR 0.31 TCGA-HC-7230-01 2 208988981 208988981 G A CRYGD Missense_Mutation p.A36V 0.15 tolerated(0.25) benign(0) TCGA-HC-7230-01 2 233546303 233546303 C T EFHD1 Silent p.A198A 0.38 TCGA-HC-7230-01 3 140406902 140406902 A G TRIM42 Missense_Mutation p.T460A 0.09 deleterious(0.02) possibly_damaging(0.633) TCGA-HC-7230-01 5 112343668 112343668 T C DCP2 Missense_Mutation p.Y326H 0.39 tolerated(0.57) benign(0.002) TCGA-HC-7230-01 5 179564990 179564990 G A RASGEF1C Silent p.T21T 0.09 TCGA-HC-7230-01 5 72195834 72195834 A G TNPO1 Silent p.A780A 0.35 TCGA-HC-7230-01 7 92020490 92020490 A G ANKIB1 Missense_Mutation p.E688G 0.14 deleterious(0) probably_damaging(1) TCGA-HC-7230-01 8 89058941 89058941 C T MMP16 Missense_Mutation p.G482E 0.09 deleterious(0) probably_damaging(1) TCGA-HC-7230-01 X 12904067 12904067 C T TLR7 Missense_Mutation p.P147L 0.75 deleterious(0) probably_damaging(1) TCGA-HC-7230-01 X 71840634 71840634 A T PHKA1 Missense_Mutation p.V693E 0.09 tolerated(0.28) benign(0.04) TCGA-HC-7231-01 10 121598206 121598206 G A MCMBP Missense_Mutation p.R419C 0.06 tolerated(0.18) possibly_damaging(0.849) TCGA-HC-7231-01 10 124392786 124392786 C A DMBT1 Missense_Mutation p.N2030K 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-HC-7231-01 10 76788961 76788961 T G KAT6B Nonsense_Mutation p.L1460* 0.06 TCGA-HC-7231-01 11 122928986 122928986 T C HSPA8 Missense_Mutation p.I577V 0.32 tolerated_low_confidence(0.86) benign(0.009) TCGA-HC-7231-01 11 33689641 33689641 C T KIAA1549L Missense_Mutation p.R1831W 0.09 deleterious(0) probably_damaging(0.999) TCGA-HC-7231-01 11 59559664 59559664 C A STX3 Silent p.R148R 0.05 TCGA-HC-7231-01 11 74015374 74015374 C A P4HA3 Missense_Mutation p.R95L 0.04 deleterious(0) probably_damaging(1) TCGA-HC-7231-01 11 76371902 76371902 G A LRRC32 Silent p.L245L 0.43 TCGA-HC-7231-01 11 88780467 88780467 C A GRM5 Missense_Mutation p.V192L 0.10 deleterious(0) probably_damaging(0.996) TCGA-HC-7231-01 12 49391665 49391665 G A DDN Missense_Mutation p.H332Y 0.22 tolerated_low_confidence(0.08) possibly_damaging(0.447) TCGA-HC-7231-01 12 60168467 60168467 G A SLC16A7 Missense_Mutation p.A131T 0.12 deleterious(0.03) probably_damaging(0.974) TCGA-HC-7231-01 12 77419608 77419608 C T E2F7 Silent p.P765P 0.42 TCGA-HC-7231-01 13 45563763 45563763 A G GPALPP1 5'UTR 0.08 TCGA-HC-7231-01 16 12798661 12798661 G A CPPED1 Nonsense_Mutation p.Q179* 0.25 TCGA-HC-7231-01 16 12798662 12798662 C A CPPED1 Missense_Mutation p.K178N 0.24 tolerated(0.08) possibly_damaging(0.752) TCGA-HC-7231-01 16 2126130 2126130 C T TSC2 Missense_Mutation p.R901C 0.35 deleterious(0) probably_damaging(0.999) TCGA-HC-7231-01 16 2579489 2579489 C T AMDHD2 Silent p.L415L 0.34 TCGA-HC-7231-01 17 10296220 10296220 C T MYH8 Silent p.Q1797Q 0.05 TCGA-HC-7231-01 17 10357986 10357986 T G MYH4 Missense_Mutation p.E859D 0.04 tolerated(0.14) benign(0.005) TCGA-HC-7231-01 17 33495343 33495343 C A UNC45B Missense_Mutation p.T472N 0.06 tolerated(0.16) benign(0.21) TCGA-HC-7231-01 17 53392674 53392674 G C HLF Missense_Mutation p.A180P 0.25 tolerated(0.06) probably_damaging(0.983) TCGA-HC-7231-01 17 80521333 80521333 G A FOXK2 Missense_Mutation p.V175I 0.29 tolerated(0.07) possibly_damaging(0.509) TCGA-HC-7231-01 18 44561616 44561616 G T TCEB3B Missense_Mutation p.T7K 0.06 deleterious(0.02) possibly_damaging(0.873) TCGA-HC-7231-01 19 19337625 19337625 C T NCAN Missense_Mutation p.T468M 0.24 tolerated(0.12) benign(0.006) TCGA-HC-7231-01 19 46388640 46388640 A G IRF2BP1 Silent p.T131T 0.07 TCGA-HC-7231-01 1 10706334 10706334 G - CASZ1 Frame_Shift_Del p.H1183Tfs*32 0.30 TCGA-HC-7231-01 1 150923074 150923075 - A SETDB1 Frame_Shift_Ins p.P575Tfs*18 0.21 TCGA-HC-7231-01 1 158517227 158517227 G A OR6Y1 Silent p.Y223Y 0.08 TCGA-HC-7231-01 1 171560757 171560757 C T PRRC2C Missense_Mutation p.T2742M 0.33 probably_damaging(0.976) TCGA-HC-7231-01 1 23236872 23236872 C T EPHB2 Intron 0.12 TCGA-HC-7231-01 20 60884512 60884512 G C LAMA5 Silent p.P3656P 0.23 TCGA-HC-7231-01 22 36897391 36897391 G A FOXRED2 Silent p.Y371Y 0.30 TCGA-HC-7231-01 2 158958497 158958497 G A UPP2 Intron 0.41 TCGA-HC-7231-01 2 85822908 85822908 C T RNF181 Missense_Mutation p.H8Y 0.08 tolerated(0.07) possibly_damaging(0.613) TCGA-HC-7231-01 3 100964785 100964785 C T IMPG2 Silent p.S468S 0.09 TCGA-HC-7231-01 3 101383903 101383903 G A ZBTB11 Missense_Mutation p.R510C 0.07 tolerated(0.05) benign(0.221) TCGA-HC-7231-01 3 167319938 167319938 G T WDR49 Missense_Mutation p.L77I 0.23 deleterious(0.04) possibly_damaging(0.701) TCGA-HC-7231-01 3 432831 432831 C T CHL1 Missense_Mutation p.T927I 0.10 deleterious(0) probably_damaging(0.996) TCGA-HC-7231-01 3 49313859 49313859 C A C3orf62 Splice_Site p.X149_splice 0.07 TCGA-HC-7231-01 3 87018023 87018023 G A VGLL3 Silent p.S218S 0.25 TCGA-HC-7231-01 4 77476913 77476913 G A SHROOM3 Missense_Mutation p.R107H 0.09 deleterious(0) probably_damaging(0.999) TCGA-HC-7231-01 5 140250251 140250251 G A PCDHA11 Silent p.P521P 0.09 TCGA-HC-7231-01 5 176316502 176316502 C T HK3 Missense_Mutation p.R265Q 0.07 deleterious(0.02) benign(0.06) TCGA-HC-7231-01 6 100841376 100841376 G T SIM1 Silent p.V519V 0.09 TCGA-HC-7231-01 7 25264785 25264785 G A NPVF Silent p.L183L 0.23 TCGA-HC-7231-01 7 44259781 44259781 G A CAMK2B Silent p.D627D 0.11 TCGA-HC-7231-01 7 72081822 72081822 G A TYW1B Silent p.G166G 0.30 TCGA-HC-7231-01 8 41552776 41552776 C T ANK1 Missense_Mutation p.E1053K 0.11 deleterious(0) possibly_damaging(0.465) TCGA-HC-7231-01 X 125685920 125685920 C T DCAF12L1 Silent p.P224P 0.63 TCGA-HC-7231-01 X 54029074 54029074 A C PHF8 Missense_Mutation p.F366V 0.11 deleterious(0) possibly_damaging(0.68) TCGA-HC-7232-01 10 50953438 50953438 G A OGDHL Silent p.Y527Y 0.08 TCGA-HC-7232-01 10 86132184 86132184 C G CCSER2 Missense_Mutation p.A459G 0.05 deleterious(0.03) benign(0.019) TCGA-HC-7232-01 11 44151632 44151632 G A EXT2 Missense_Mutation p.V406M 0.30 tolerated(0.26) benign(0.055) TCGA-HC-7232-01 11 55761664 55761664 G A OR5F1 Silent p.A146A 0.33 TCGA-HC-7232-01 11 77961404 77961404 G A GAB2 Missense_Mutation p.S140F 0.30 deleterious(0.01) possibly_damaging(0.764) TCGA-HC-7232-01 12 12974651 12974651 A G DDX47 Missense_Mutation p.I145V 0.21 tolerated(0.65) benign(0.005) TCGA-HC-7232-01 13 100622586 100622586 C T ZIC5 Silent p.E448E 0.29 TCGA-HC-7232-01 13 43934080 43934080 C T ENOX1 Missense_Mutation p.G166S 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-HC-7232-01 14 25101106 25101106 C T GZMB Silent p.E186E 0.16 TCGA-HC-7232-01 14 69256863 69256863 C A ZFP36L1 Missense_Mutation p.C135F 0.18 deleterious(0) probably_damaging(0.999) TCGA-HC-7232-01 15 71185232 71185232 T G LRRC49 5'UTR 0.17 TCGA-HC-7232-01 15 75798219 75798219 G A PTPN9 Silent p.N255N 0.05 TCGA-HC-7232-01 17 46863542 46863542 G A TTLL6 Missense_Mutation p.T582I 0.02 tolerated(0.09) benign(0.01) TCGA-HC-7232-01 17 51901055 51901055 C T KIF2B Missense_Mutation p.R221W 0.31 deleterious(0) probably_damaging(1) TCGA-HC-7232-01 19 4930834 4930834 C G MIR4747 5'Flank 0.26 TCGA-HC-7232-01 19 50462138 50462138 G A SIGLEC11 Silent p.N375N 0.05 TCGA-HC-7232-01 1 108507289 108507289 T C VAV3 Missense_Mutation p.Q68R 0.11 deleterious(0) probably_damaging(0.913) TCGA-HC-7232-01 1 11596429 11596429 G A PTCHD2 Missense_Mutation p.V1289M 0.33 deleterious(0) probably_damaging(0.988) TCGA-HC-7232-01 1 185959468 185959468 C T HMCN1 Silent p.S1090S 0.28 TCGA-HC-7232-01 20 2846119 2846119 A G VPS16 Missense_Mutation p.K750R 0.26 tolerated(0.05) benign(0.379) TCGA-HC-7232-01 20 42635234 42635234 G A TOX2 Silent p.P71P 0.30 TCGA-HC-7232-01 22 24581635 24581635 G A SUSD2 Silent p.R359R 0.24 TCGA-HC-7232-01 2 96789882 96789882 C T ASTL Missense_Mutation p.V335I 0.21 tolerated_low_confidence(0.65) benign(0.002) TCGA-HC-7232-01 3 125725829 125725829 T A SLC41A3 Intron 0.05 TCGA-HC-7232-01 3 125824617 125824617 C G ALDH1L1 Missense_Mutation p.A879P 0.24 deleterious(0) probably_damaging(0.999) TCGA-HC-7232-01 3 16364942 16364942 G C RFTN1 Missense_Mutation p.Q425E 0.20 deleterious(0) probably_damaging(0.997) TCGA-HC-7232-01 3 183901338 183901338 C T AP2M1 Silent p.S414S 0.24 TCGA-HC-7232-01 3 186338454 186338454 C T AHSG Missense_Mutation p.S280F 0.22 tolerated(0.11) benign(0.009) TCGA-HC-7232-01 3 48626825 48626825 G A COL7A1 Missense_Mutation p.T750M 0.27 unknown(0) TCGA-HC-7232-01 4 78082099 78082099 A G CCNG2 Missense_Mutation p.I168V 0.15 tolerated(0.26) benign(0.003) TCGA-HC-7232-01 5 135692511 135692511 G A TRPC7 Missense_Mutation p.R189C 0.20 deleterious(0.04) benign(0.032) TCGA-HC-7232-01 5 177546687 177546687 G A N4BP3 Missense_Mutation p.G35R 0.06 tolerated(0.12) benign(0.025) TCGA-HC-7232-01 6 128294293 128294293 G A PTPRK Silent p.G1387G 0.24 TCGA-HC-7232-01 6 144416263 144416263 G A SF3B5 3'UTR 0.07 TCGA-HC-7232-01 6 30121516 30121516 G A TRIM10 3'UTR 0.05 TCGA-HC-7232-01 6 32011583 32011583 C T TNXB Missense_Mutation p.V254M 0.16 deleterious(0) probably_damaging(0.938) TCGA-HC-7232-01 6 47846113 47846113 C T PTCHD4 Missense_Mutation p.A823T 0.27 tolerated(0.37) probably_damaging(0.971) TCGA-HC-7232-01 7 100014780 100014780 C G ZCWPW1 Missense_Mutation p.E130Q 0.28 tolerated(0.07) probably_damaging(0.949) TCGA-HC-7232-01 8 42045029 42045029 C A PLAT Silent p.A142A 0.33 TCGA-HC-7232-01 X 151869994 151869994 A C MAGEA6 Missense_Mutation p.L228F 0.09 deleterious(0.01) possibly_damaging(0.598) TCGA-HC-7232-01 X 154182174 154182174 G A F8 Silent p.I632I 0.06 TCGA-HC-7233-01 10 126662280 126662281 AA - ZRANB1 Frame_Shift_Del p.K409Rfs*10 0.11 TCGA-HC-7233-01 10 74128038 74128038 T C MICU1 Missense_Mutation p.K449R 0.25 tolerated(0.28) benign(0.443) TCGA-HC-7233-01 11 118498113 118498113 T C PHLDB1 Missense_Mutation p.S192P 0.24 deleterious(0) possibly_damaging(0.864) TCGA-HC-7233-01 11 33117876 33117876 T C CSTF3 Missense_Mutation p.I451V 0.31 tolerated(0.48) benign(0.03) TCGA-HC-7233-01 11 5264445 5264445 A T HBG1 3'Flank 0.29 TCGA-HC-7233-01 12 13061954 13061954 G A GPRC5A Silent p.L257L 0.27 TCGA-HC-7233-01 12 52774883 52774883 A G KRT84 Missense_Mutation p.I395T 0.04 tolerated(0.05) benign(0.012) TCGA-HC-7233-01 16 12662490 12662490 C A SNX29 3'UTR 0.28 TCGA-HC-7233-01 16 53485706 53485706 T C RBL2 Silent p.C243C 0.19 TCGA-HC-7233-01 17 27038716 27038716 G A PROCA1 5'UTR 0.40 TCGA-HC-7233-01 17 48601102 48601102 C T MYCBPAP Missense_Mutation p.S574F 0.25 deleterious(0) probably_damaging(0.994) TCGA-HC-7233-01 19 48848545 48848545 G A TMEM143 Missense_Mutation p.R146C 0.04 tolerated(0.07) possibly_damaging(0.527) TCGA-HC-7233-01 19 58565071 58565071 G T ZSCAN1 Missense_Mutation p.Q293H 0.34 tolerated(0.08) benign(0.395) TCGA-HC-7233-01 1 110171852 110171852 G C AMPD2 Missense_Mutation p.E619Q 0.04 tolerated(1) benign(0.057) TCGA-HC-7233-01 1 19557342 19557342 C T EMC1 Missense_Mutation p.R687Q 0.27 tolerated(0.14) benign(0.301) TCGA-HC-7233-01 20 306756 306756 C G SOX12 Missense_Mutation p.P63R 0.29 deleterious(0) probably_damaging(1) TCGA-HC-7233-01 20 48746131 48746131 G C TMEM189-UBE2V1 Missense_Mutation p.L144V 0.23 tolerated_low_confidence(0.25) benign(0) TCGA-HC-7233-01 22 26884138 26884138 T C SRRD Silent p.L132L 0.22 TCGA-HC-7233-01 2 101087006 101087006 T C NMS Missense_Mutation p.M19T 0.07 tolerated(0.18) benign(0.003) TCGA-HC-7233-01 2 224849663 224849663 C T SERPINE2 Silent p.S242S 0.05 TCGA-HC-7233-01 4 114290838 114290838 C T ANK2 Silent p.P3829P 0.09 TCGA-HC-7233-01 4 115997743 115997743 T G NDST4 Missense_Mutation p.L150F 0.06 deleterious(0.03) probably_damaging(0.995) TCGA-HC-7233-01 4 138449742 138449742 T A PCDH18 Missense_Mutation p.D877V 0.22 deleterious(0) probably_damaging(0.964) TCGA-HC-7233-01 4 148463815 148463816 - A EDNRA 3'UTR 0.29 TCGA-HC-7233-01 4 4281393 4281393 A T LYAR Silent p.V107V 0.18 TCGA-HC-7233-01 4 6302431 6302431 G A WFS1 Silent p.L303L 0.36 TCGA-HC-7233-01 5 114466299 114466299 C T TRIM36 Missense_Mutation p.V608I 0.22 tolerated(0.41) benign(0.004) TCGA-HC-7233-01 5 134870749 134870749 C T NEUROG1 Missense_Mutation p.R211H 0.23 tolerated(0.35) benign(0.002) TCGA-HC-7233-01 5 138700332 138700332 G T PAIP2 Missense_Mutation p.W73L 0.05 deleterious(0.02) benign(0.027) TCGA-HC-7233-01 5 140475283 140475283 G T PCDHB2 Silent p.L303L 0.31 TCGA-HC-7233-01 5 153795366 153795366 G C GALNT10 Missense_Mutation p.E509D 0.23 tolerated(0.06) probably_damaging(0.993) TCGA-HC-7233-01 5 96245318 96245318 A T ERAP2 Missense_Mutation p.D735V 0.07 deleterious(0) probably_damaging(0.992) TCGA-HC-7233-01 6 1313422 1313422 G A FOXQ1 Silent p.T161T 0.06 TCGA-HC-7233-01 6 33411229 33411229 G A SYNGAP1 Missense_Mutation p.R967Q 0.13 tolerated(0.75) benign(0.103) TCGA-HC-7233-01 7 150554545 150554545 C T AOC1 Silent p.R329R 0.30 TCGA-HC-7233-01 7 152012422 152012424 CAC - KMT2C Splice_Site p.X130_splice 0.15 TCGA-HC-7233-01 7 48018175 48018175 C A HUS1 Nonsense_Mutation p.E66* 0.31 TCGA-HC-7233-01 8 113317094 113317094 G A CSMD3 Nonsense_Mutation p.R2708* 0.17 TCGA-HC-7233-01 8 133053851 133053851 G C OC90 Missense_Mutation p.L89V 0.28 deleterious(0.02) benign(0.201) TCGA-HC-7233-01 9 138656961 138656961 G A KCNT1 Missense_Mutation p.V374M 0.05 deleterious(0) probably_damaging(0.981) TCGA-HC-7233-01 9 139793320 139793320 G T TRAF2 Missense_Mutation p.R43M 0.29 deleterious(0) probably_damaging(0.95) TCGA-HC-7233-01 9 139793321 139793321 G T TRAF2 Missense_Mutation p.R43S 0.26 deleterious(0) possibly_damaging(0.636) TCGA-HC-7233-01 X 43571169 43571169 T A MAOA Silent p.I119I 0.07 TCGA-HC-7736-01 10 25160963 25160963 T C PRTFDC1 Missense_Mutation p.I123M 0.07 tolerated(0.12) benign(0.373) TCGA-HC-7736-01 10 45644356 45644356 T G RP11-445N18.7 Intron 0.33 TCGA-HC-7736-01 10 60994191 60994191 T C PHYHIPL Silent p.D78D 0.38 TCGA-HC-7736-01 10 73491778 73491778 G A CDH23 Silent p.S1255S 0.12 TCGA-HC-7736-01 11 119548471 119548471 T C PVRL1 Missense_Mutation p.N176S 0.51 deleterious(0.01) probably_damaging(0.995) TCGA-HC-7736-01 12 123187864 123187864 C T HCAR2 5'UTR 0.34 TCGA-HC-7736-01 12 27175498 27175498 T C MED21 5'UTR 0.29 TCGA-HC-7736-01 12 53646693 53646693 G C MFSD5 Missense_Mutation p.R132P 0.16 deleterious(0.02) possibly_damaging(0.838) TCGA-HC-7736-01 16 7759095 7759095 G A RBFOX1 Missense_Mutation p.A366T 0.34 tolerated(1) benign(0.001) TCGA-HC-7736-01 17 48761112 48761112 G C ABCC3 Missense_Mutation p.E1317Q 0.27 deleterious(0.02) probably_damaging(0.995) TCGA-HC-7736-01 1 18809360 18809360 G A KLHDC7A Missense_Mutation p.A629T 0.28 deleterious(0) probably_damaging(0.995) TCGA-HC-7736-01 1 63099200 63099216 TATGGTTCTGCACACTC - DOCK7 Frame_Shift_Del p.E357Yfs*12 0.13 TCGA-HC-7736-01 22 25155922 25155922 C T PIWIL3 Missense_Mutation p.R46Q 0.32 tolerated(0.67) benign(0.005) TCGA-HC-7736-01 2 67631946 67631946 A - ETAA1 Frame_Shift_Del p.I712* 0.15 TCGA-HC-7736-01 3 133896849 133896850 AT - RYK Frame_Shift_Del p.M415Efs*6 0.17 TCGA-HC-7736-01 3 439982 439982 G T CHL1 Missense_Mutation p.G1056V 0.09 tolerated(0.09) probably_damaging(0.962) TCGA-HC-7736-01 3 98312096 98312096 A C CPOX Missense_Mutation p.L85V 0.39 tolerated(0.09) benign(0.001) TCGA-HC-7736-01 4 79334179 79334179 G A FRAS1 Silent p.A1455A 0.34 TCGA-HC-7736-01 4 8221109 8221109 G A SH3TC1 Missense_Mutation p.E322K 0.14 deleterious(0.01) possibly_damaging(0.9) TCGA-HC-7736-01 5 163530 163530 A C PLEKHG4B Missense_Mutation p.S759R 0.35 deleterious(0) possibly_damaging(0.893) TCGA-HC-7736-01 5 9066709 9066709 G A SEMA5A Missense_Mutation p.T708M 0.28 deleterious(0) probably_damaging(0.999) TCGA-HC-7736-01 6 69348840 69348840 T A BAI3 Missense_Mutation p.D91E 0.28 deleterious(0) probably_damaging(0.956) TCGA-HC-7736-01 7 42957400 42957400 G C PSMA2 Missense_Mutation p.H189D 0.24 deleterious(0.03) probably_damaging(0.975) TCGA-HC-7736-01 9 128321994 128321994 T G MAPKAP1 Missense_Mutation p.K256Q 0.23 deleterious(0.01) probably_damaging(0.958) TCGA-HC-7736-01 X 54989709 54989709 C T PFKFB1 Nonsense_Mutation p.W68* 0.54 TCGA-HC-7737-01 11 5080421 5080421 A T OR52E2 Missense_Mutation p.I146N 0.13 deleterious(0) benign(0.351) TCGA-HC-7737-01 12 14927441 14927441 G A H2AFJ Missense_Mutation p.A13T 0.05 tolerated_low_confidence(0.17) benign(0.003) TCGA-HC-7737-01 14 94395229 94395229 C G FAM181A Missense_Mutation p.P262A 0.14 deleterious(0.03) possibly_damaging(0.547) TCGA-HC-7737-01 15 86284686 86284686 A G AKAP13 Missense_Mutation p.E2677G 0.11 deleterious(0.03) benign(0.056) TCGA-HC-7737-01 16 27475706 27475706 C A GTF3C1 Missense_Mutation p.S1936I 0.15 tolerated(0.09) benign(0.118) TCGA-HC-7737-01 16 3451984 3451984 A T ZNF174 5'UTR 0.10 TCGA-HC-7737-01 19 35251088 35251088 T G ZNF599 Missense_Mutation p.K206N 0.04 deleterious(0.02) probably_damaging(1) TCGA-HC-7737-01 19 51358200 51358200 A G KLK3 5'UTR 0.04 TCGA-HC-7737-01 19 57803368 57803368 C T ZNF460 Missense_Mutation p.R487C 0.20 tolerated(0.1) benign(0.365) TCGA-HC-7737-01 1 111660745 111660745 A G DRAM2 3'UTR 0.22 TCGA-HC-7737-01 1 159889625 159889625 C T TAGLN2 Missense_Mutation p.V61M 0.20 deleterious(0) probably_damaging(0.989) TCGA-HC-7737-01 3 16261011 16261011 A G GALNT15 Silent p.P498P 0.13 TCGA-HC-7737-01 4 119216935 119216935 T A PRSS12 Missense_Mutation p.L638F 0.05 deleterious(0.03) possibly_damaging(0.461) TCGA-HC-7737-01 4 47408857 47408857 T A GABRB1 Missense_Mutation p.F332I 0.09 tolerated(0.08) probably_damaging(0.99) TCGA-HC-7737-01 4 54325595 54325596 - G FIP1L1 Frame_Shift_Ins p.E589Gfs*17 0.10 TCGA-HC-7737-01 5 140203081 140203081 G T PCDHA5 Missense_Mutation p.G574V 0.06 tolerated_low_confidence(0.09) benign(0.069) TCGA-HC-7737-01 6 41738719 41738719 G A FRS3 Missense_Mutation p.P373S 0.04 tolerated(0.7) benign(0.018) TCGA-HC-7737-01 7 102098332 102098332 C T ALKBH4 Missense_Mutation p.G140S 0.15 tolerated(0.52) benign(0.002) TCGA-HC-7737-01 7 22349655 22349655 G A RAPGEF5 5'UTR 0.06 TCGA-HC-7737-01 9 107456834 107456834 C G OR13D1 Missense_Mutation p.F44L 0.21 deleterious(0) probably_damaging(0.998) TCGA-HC-7737-01 9 134026129 134026129 T G NUP214 Missense_Mutation p.L752V 0.03 possibly_damaging(0.899) TCGA-HC-7738-01 10 15103733 15103733 A G OLAH Silent p.L111L 0.26 TCGA-HC-7738-01 10 46261197 46261197 C T FAM21C Missense_Mutation p.A603V 0.14 deleterious(0.05) benign(0.008) TCGA-HC-7738-01 10 5493806 5493806 A C NET1 Missense_Mutation p.K90T 0.04 deleterious(0) probably_damaging(0.999) TCGA-HC-7738-01 11 33564307 33564307 G A KIAA1549L Missense_Mutation p.G103R 0.25 tolerated_low_confidence(0.07) benign(0.009) TCGA-HC-7738-01 11 64900945 64900945 A C SYVN1 Missense_Mutation p.M43R 0.06 deleterious(0) probably_damaging(0.961) TCGA-HC-7738-01 11 82892950 82892950 T G PCF11 Missense_Mutation p.F1408V 0.36 deleterious(0) probably_damaging(0.996) TCGA-HC-7738-01 12 109286790 109286790 G A DAO Missense_Mutation p.R162Q 0.29 tolerated(0.08) benign(0.125) TCGA-HC-7738-01 12 25259959 25259959 C A LRMP Missense_Mutation p.P411T 0.34 tolerated(0.16) possibly_damaging(0.619) TCGA-HC-7738-01 12 49416426 49416440 TGCCAATGTACTCGA - KMT2D In_Frame_Del p.I5424_G5428del 0.21 TCGA-HC-7738-01 12 95888909 95888909 T C METAP2 Missense_Mutation p.I256T 0.27 deleterious(0) probably_damaging(0.921) TCGA-HC-7738-01 13 47351601 47351601 C T ESD Missense_Mutation p.R253Q 0.36 deleterious(0.02) possibly_damaging(0.707) TCGA-HC-7738-01 15 75134439 75134439 G A ULK3 Missense_Mutation p.A114V 0.25 tolerated(0.4) benign(0.082) TCGA-HC-7738-01 16 72991392 72991392 G A ZFHX3 Nonsense_Mutation p.Q885* 0.28 TCGA-HC-7738-01 17 38296778 38296778 C A CASC3 5'UTR 0.17 TCGA-HC-7738-01 17 72736974 72736974 T C RAB37 Missense_Mutation p.F59S 0.11 deleterious(0) probably_damaging(0.993) TCGA-HC-7738-01 19 12155153 12155153 G T ZNF878 Silent p.R355R 0.05 TCGA-HC-7738-01 19 8321856 8321856 C G CERS4 Missense_Mutation p.H212Q 0.03 deleterious(0) probably_damaging(1) TCGA-HC-7738-01 1 147380382 147380382 C T GJA8 Silent p.V100V 0.19 TCGA-HC-7738-01 1 82402445 82402445 T A LPHN2 Silent p.T107T 0.41 TCGA-HC-7738-01 20 57415297 57415297 G T RP4-806M20.3 5'Flank 0.06 TCGA-HC-7738-01 2 131487419 131487419 C T GPR148 Missense_Mutation p.T232I 0.11 tolerated(0.32) benign(0.005) TCGA-HC-7738-01 2 210654289 210654289 G A UNC80 Missense_Mutation p.R253Q 0.08 benign(0) TCGA-HC-7738-01 2 49190030 49190030 A G FSHR Missense_Mutation p.C644R 0.16 deleterious(0) benign(0.269) TCGA-HC-7738-01 2 55746969 55746969 G T CCDC104 Missense_Mutation p.W11L 0.32 deleterious(0) probably_damaging(0.999) TCGA-HC-7738-01 3 120365112 120365112 A G HGD Splice_Site p.X217_splice 0.32 TCGA-HC-7738-01 3 129389968 129389968 T C TMCC1 Missense_Mutation p.Q239R 0.15 deleterious(0.04) probably_damaging(0.998) TCGA-HC-7738-01 3 151067883 151067883 A G MED12L Missense_Mutation p.I728V 0.30 tolerated(1) benign(0.005) TCGA-HC-7738-01 3 25820147 25820147 C T NGLY1 Missense_Mutation p.R55Q 0.28 deleterious(0.01) probably_damaging(0.977) TCGA-HC-7738-01 3 41266124 41266124 A G CTNNB1 Missense_Mutation p.T41A 0.09 deleterious(0) possibly_damaging(0.844) TCGA-HC-7738-01 4 110972797 110972797 C T ELOVL6 Nonsense_Mutation p.W165* 0.27 TCGA-HC-7738-01 4 54440053 54440053 G A LNX1 Silent p.L39L 0.33 TCGA-HC-7738-01 5 140208763 140208763 G A PCDHA6 Missense_Mutation p.A363T 0.19 tolerated_low_confidence(0.07) benign(0.429) TCGA-HC-7738-01 5 147781990 147781990 G A FBXO38 Missense_Mutation p.R169H 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-HC-7738-01 5 34954743 34954743 C G DNAJC21 Missense_Mutation p.A552G 0.16 tolerated(0.07) probably_damaging(0.911) TCGA-HC-7738-01 5 45645595 45645595 C A HCN1 Missense_Mutation p.A181S 0.24 deleterious(0.02) benign(0.147) TCGA-HC-7738-01 5 45645596 45645596 C T HCN1 Silent p.V180V 0.22 TCGA-HC-7738-01 6 118790285 118790285 T C CEP85L Missense_Mutation p.Q738R 0.13 deleterious(0) possibly_damaging(0.653) TCGA-HC-7738-01 6 34839640 34839640 A C UHRF1BP1 Missense_Mutation p.K1379Q 0.10 tolerated(0.22) benign(0.04) TCGA-HC-7738-01 8 144998994 144998994 C T PLEC Silent p.A1838A 0.25 TCGA-HC-7738-01 8 146076404 146076404 T C COMMD5 Missense_Mutation p.D107G 0.10 deleterious(0) benign(0.122) TCGA-HC-7738-01 8 73480145 73480145 C T KCNB2 Missense_Mutation p.T59M 0.28 deleterious(0) probably_damaging(0.998) TCGA-HC-7738-01 X 107977190 107977191 AT - IRS4 Frame_Shift_Del p.N795Tfs*29 0.16 TCGA-HC-7740-01 11 105782664 105782664 G A GRIA4 Intron 0.10 TCGA-HC-7740-01 11 18313152 18313152 T C HPS5 Silent p.G759G 0.08 TCGA-HC-7740-01 11 293076 293076 C T ATHL1 Intron 0.10 TCGA-HC-7740-01 12 112486111 112486113 AGA - NAA25 In_Frame_Del p.L623del 0.10 TCGA-HC-7740-01 12 56558126 56558126 C G SMARCC2 Missense_Mutation p.V1177L 0.07 tolerated_low_confidence(0.12) unknown(0) TCGA-HC-7740-01 15 63449425 63449425 G C RPS27L Intron 0.16 TCGA-HC-7740-01 15 75801287 75801287 G C PTPN9 Missense_Mutation p.L204V 0.13 tolerated(0.06) benign(0.314) TCGA-HC-7740-01 16 10273944 10273944 C T GRIN2A Missense_Mutation p.V109I 0.09 tolerated(0.83) benign(0.009) TCGA-HC-7740-01 16 14304154 14304154 G A MKL2 Missense_Mutation p.G70D 0.10 deleterious(0) probably_damaging(1) TCGA-HC-7740-01 16 18809333 18809333 G T ARL6IP1 Silent p.S68S 0.15 TCGA-HC-7740-01 17 49097614 49097614 C A SPAG9 Missense_Mutation p.A333S 0.09 tolerated(0.41) benign(0.002) TCGA-HC-7740-01 18 2760731 2760731 T G SMCHD1 Missense_Mutation p.S1476R 0.06 deleterious(0.03) possibly_damaging(0.839) TCGA-HC-7740-01 19 38934381 38934381 C T RYR1 Silent p.S123S 0.08 TCGA-HC-7740-01 1 154942720 154942720 C T SHC1 Missense_Mutation p.V95I 0.07 tolerated(0.34) benign(0.019) TCGA-HC-7740-01 1 16262301 16262301 A G SPEN Missense_Mutation p.Y3189C 0.11 probably_damaging(0.994) TCGA-HC-7740-01 1 210577986 210577986 A C HHAT Missense_Mutation p.N217T 0.10 tolerated(0.12) probably_damaging(0.925) TCGA-HC-7740-01 1 24419567 24419567 C T MYOM3 Silent p.K320K 0.15 TCGA-HC-7740-01 20 39832183 39832183 G A ZHX3 Silent p.P458P 0.16 TCGA-HC-7740-01 2 70068104 70068104 G A GMCL1 Missense_Mutation p.R171Q 0.07 tolerated(0.06) benign(0.183) TCGA-HC-7740-01 3 72495650 72495650 G A RYBP Missense_Mutation p.T141I 0.11 deleterious(0) probably_damaging(0.998) TCGA-HC-7740-01 3 93646107 93646107 T A PROS1 Missense_Mutation p.N74I 0.10 deleterious(0) probably_damaging(1) TCGA-HC-7740-01 7 31862844 31862844 C T PDE1C Silent p.S535S 0.10 TCGA-HC-7740-01 7 84628962 84628962 G A SEMA3D Missense_Mutation p.R710W 0.05 deleterious(0) possibly_damaging(0.808) TCGA-HC-7740-01 8 144681434 144681434 T C TIGD5 Missense_Mutation p.L454P 0.18 deleterious(0) probably_damaging(0.999) TCGA-HC-7740-01 8 38157097 38157097 G A WHSC1L1 Nonsense_Mutation p.Q875* 0.18 TCGA-HC-7740-01 X 104728369 104728369 T A IL1RAPL2 Missense_Mutation p.D254E 0.23 tolerated(1) benign(0.04) TCGA-HC-7742-01 10 102248628 102248628 G T SEC31B Missense_Mutation p.S1092Y 0.37 deleterious(0) possibly_damaging(0.563) TCGA-HC-7742-01 11 119227592 119227592 C T USP2 Missense_Mutation p.A591T 0.44 deleterious(0) probably_damaging(0.999) TCGA-HC-7742-01 11 14665682 14665682 G A PDE3B Missense_Mutation p.G21S 0.16 tolerated_low_confidence(0.09) benign(0.005) TCGA-HC-7742-01 11 2432663 2432663 G A TRPM5 Missense_Mutation p.R901C 0.39 deleterious(0) probably_damaging(0.984) TCGA-HC-7742-01 11 36595849 36595849 G A RAG1 Missense_Mutation p.R332Q 0.38 tolerated_low_confidence(0.23) benign(0) TCGA-HC-7742-01 12 126138738 126138738 G A TMEM132B Missense_Mutation p.V907I 0.32 deleterious(0) possibly_damaging(0.659) TCGA-HC-7742-01 13 45148696 45148696 T C TSC22D1 Silent p.Q505Q 0.33 TCGA-HC-7742-01 14 38060558 38060558 C T FOXA1 3'UTR 0.22 TCGA-HC-7742-01 15 65667629 65667629 C T IGDCC3 Missense_Mutation p.R72Q 0.26 tolerated(0.48) benign(0.015) TCGA-HC-7742-01 16 15225393 15225393 C A RP11-1186N24.5 RNA 0.09 TCGA-HC-7742-01 16 70057560 70057560 A C PDXDC2P RNA 0.41 TCGA-HC-7742-01 17 40717505 40717505 G T COASY Silent p.V497V 0.25 TCGA-HC-7742-01 17 7340279 7340279 G T TMEM102 Missense_Mutation p.W327C 0.18 deleterious(0.01) possibly_damaging(0.708) TCGA-HC-7742-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.34 TCGA-HC-7742-01 17 79632168 79632168 A T OXLD1 3'UTR 0.18 TCGA-HC-7742-01 19 18092575 18092575 G A KCNN1 Missense_Mutation p.V186M 0.20 deleterious(0.02) possibly_damaging(0.475) TCGA-HC-7742-01 19 3762707 3762707 C G MRPL54 Silent p.T3T 0.26 TCGA-HC-7742-01 19 45579626 45579626 G A ZNF296 Silent p.S2S 0.06 TCGA-HC-7742-01 19 51462556 51462556 G A KLK6 Missense_Mutation p.P200L 0.33 deleterious(0) probably_damaging(1) TCGA-HC-7742-01 1 150259209 150259209 G A C1orf51 Missense_Mutation p.R334H 0.28 tolerated(0.22) benign(0.004) TCGA-HC-7742-01 1 154303605 154303605 G T ATP8B2 Missense_Mutation p.D129Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-HC-7742-01 1 168549329 168549329 G C XCL1 Missense_Mutation p.R30S 0.20 tolerated(1) benign(0.002) TCGA-HC-7742-01 1 183207488 183207488 C T LAMC2 Missense_Mutation p.A934V 0.25 deleterious(0) probably_damaging(0.999) TCGA-HC-7742-01 1 237982395 237982395 C T RYR2 Silent p.I4831I 0.38 TCGA-HC-7742-01 1 35370062 35370062 G A DLGAP3 Missense_Mutation p.S308L 0.28 deleterious(0) benign(0.036) TCGA-HC-7742-01 20 25205809 25205809 C G ENTPD6 Intron 0.36 TCGA-HC-7742-01 22 50893710 50893710 G A SBF1 Silent p.A1499A 0.10 TCGA-HC-7742-01 2 21252827 21252827 C T APOB Missense_Mutation p.M471I 0.08 benign(0.016) TCGA-HC-7742-01 3 168819875 168819875 C T MECOM Missense_Mutation p.R792Q 0.27 deleterious(0.03) probably_damaging(0.939) TCGA-HC-7742-01 3 17279892 17279892 G A TBC1D5 Missense_Mutation p.P451S 0.20 deleterious(0.03) benign(0.115) TCGA-HC-7742-01 4 110737454 110737454 G A GAR1 Missense_Mutation p.G45D 0.06 tolerated_low_confidence(0.14) unknown(0) TCGA-HC-7742-01 5 41159224 41159224 G A C6 Nonsense_Mutation p.R606* 0.29 TCGA-HC-7742-01 6 100390896 100390896 C T MCHR2 Silent p.S172S 0.25 TCGA-HC-7742-01 7 100839218 100839218 C T MOGAT3 3'UTR 0.28 TCGA-HC-7742-01 7 140453122 140453133 TCCATCGAGATT - BRAF In_Frame_Del p.K601_W604del 0.12 TCGA-HC-7742-01 7 143632698 143632698 G A OR2F2 Missense_Mutation p.A125T 0.27 deleterious(0) probably_damaging(0.989) TCGA-HC-7742-01 7 48141449 48141449 G A UPP1 Missense_Mutation p.R64Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-HC-7742-01 7 48352729 48352729 C T ABCA13 Silent p.S3194S 0.32 TCGA-HC-7742-01 9 111617150 111617150 C T ACTL7B Missense_Mutation p.R354H 0.25 deleterious(0.01) probably_damaging(0.92) TCGA-HC-7742-01 9 139740894 139740894 G T C9orf172 Missense_Mutation p.M676I 0.05 tolerated(0.05) benign(0.228) TCGA-HC-7742-01 9 23731123 23731123 C G ELAVL2 Missense_Mutation p.G77A 0.36 tolerated(0.08) benign(0.316) TCGA-HC-7742-01 X 153278063 153278063 C T IRAK1 Missense_Mutation p.R666Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-HC-7744-01 10 85961671 85961671 G A CDHR1 Missense_Mutation p.A212T 0.25 deleterious(0) probably_damaging(0.987) TCGA-HC-7744-01 11 65349635 65349635 G T EHBP1L1 Missense_Mutation p.A498S 0.23 tolerated(0.21) benign(0.022) TCGA-HC-7744-01 12 112326400 112326400 C G MAPKAPK5 Missense_Mutation p.L360V 0.41 deleterious(0) benign(0.09) TCGA-HC-7744-01 12 26277809 26277809 G A BHLHE41 5'UTR 0.16 TCGA-HC-7744-01 12 52379005 52379005 A G ACVR1B Missense_Mutation p.K378E 0.39 deleterious(0.01) possibly_damaging(0.452) TCGA-HC-7744-01 12 69986785 69986785 T C CCT2 Silent p.S260S 0.38 TCGA-HC-7744-01 15 25451275 25451275 C T SNORD115-22 5'Flank 0.50 TCGA-HC-7744-01 15 44865858 44865858 C T SPG11 Missense_Mutation p.R2031Q 0.15 deleterious(0) possibly_damaging(0.776) TCGA-HC-7744-01 17 15968316 15968317 - G NCOR1 Frame_Shift_Ins p.N1657Qfs*57 0.27 TCGA-HC-7744-01 17 56833353 56833353 G A PPM1E 5'UTR 0.10 TCGA-HC-7744-01 19 12575993 12575993 C T ZNF709 Missense_Mutation p.G248E 0.08 tolerated(0.08) probably_damaging(1) TCGA-HC-7744-01 19 9090433 9090433 A T MUC16 Missense_Mutation p.F461Y 0.03 unknown(0) TCGA-HC-7744-01 1 110301232 110301232 A G EPS8L3 Missense_Mutation p.M173T 0.33 tolerated(0.42) benign(0.03) TCGA-HC-7744-01 1 1117795 1117795 C G TTLL10 Missense_Mutation p.H295Q 0.12 deleterious(0.04) benign(0.046) TCGA-HC-7744-01 1 145281379 145281379 C G NOTCH2NL Missense_Mutation p.C103W 0.09 deleterious(0) probably_damaging(0.998) TCGA-HC-7744-01 1 158615323 158615323 C G SPTA1 Missense_Mutation p.D1320H 0.06 deleterious(0) probably_damaging(0.997) TCGA-HC-7744-01 1 160385959 160385959 G A VANGL2 Missense_Mutation p.R60Q 0.29 tolerated(0.13) possibly_damaging(0.778) TCGA-HC-7744-01 1 19499502 19499502 G A UBR4 Missense_Mutation p.A1126V 0.06 benign(0.127) TCGA-HC-7744-01 1 220091782 220091782 G A SLC30A10 Missense_Mutation p.T258M 0.37 deleterious(0) probably_damaging(0.953) TCGA-HC-7744-01 1 40318533 40318533 T A TRIT1 Missense_Mutation p.T144S 0.32 tolerated(0.43) benign(0.005) TCGA-HC-7744-01 21 31802730 31802730 C T KRTAP13-4 Missense_Mutation p.S46F 0.46 deleterious(0) benign(0.443) TCGA-HC-7744-01 21 40668227 40668227 C T BRWD1 Missense_Mutation p.E138K 0.65 deleterious(0.01) probably_damaging(0.952) TCGA-HC-7744-01 22 20457106 20457106 C T RIMBP3 Missense_Mutation p.R1399K 0.13 tolerated(0.29) benign(0.034) TCGA-HC-7744-01 22 47095356 47095356 G A CERK Missense_Mutation p.S266L 0.32 deleterious(0) probably_damaging(0.921) TCGA-HC-7744-01 2 144714783 144714783 T A GTDC1 Missense_Mutation p.H370L 0.35 deleterious(0) probably_damaging(0.999) TCGA-HC-7744-01 2 209204774 209204774 A C PIKFYVE Missense_Mutation p.Q1617P 0.49 tolerated(0.13) possibly_damaging(0.806) TCGA-HC-7744-01 3 14212034 14212034 G T XPC Missense_Mutation p.L106I 0.05 tolerated_low_confidence(0.4) benign(0.003) TCGA-HC-7744-01 4 25785893 25785893 T C SEL1L3 Missense_Mutation p.N746S 0.05 deleterious(0) probably_damaging(0.969) TCGA-HC-7744-01 5 127800512 127800512 C A FBN2 Missense_Mutation p.G244V 0.44 deleterious(0.02) probably_damaging(0.993) TCGA-HC-7744-01 5 139193322 139193322 A C PSD2 Missense_Mutation p.D267A 0.33 tolerated(0.17) benign(0.05) TCGA-HC-7744-01 5 145252483 145252483 G A GRXCR2 Missense_Mutation p.R17W 0.40 deleterious(0) probably_damaging(1) TCGA-HC-7744-01 7 102895274 102895274 T C DPY19L2P2 RNA 0.15 TCGA-HC-7744-01 7 106508395 106508395 G A PIK3CG Missense_Mutation p.R130Q 0.07 tolerated(0.58) benign(0.001) TCGA-HC-7744-01 8 67763086 67763086 T - SGK3 Frame_Shift_Del p.F419Lfs*52 0.16 TCGA-HC-7744-01 9 100388075 100388075 T C TSTD2 Missense_Mutation p.S124G 0.44 tolerated(0.24) benign(0.003) TCGA-HC-7744-01 X 91132876 91132876 G T PCDH11X Missense_Mutation p.G546V 0.82 deleterious(0) probably_damaging(1) TCGA-HC-7745-01 10 102732605 102732605 C T SEMA4G 5'UTR 0.32 TCGA-HC-7745-01 10 91505679 91505679 G T KIF20B Silent p.V1313V 0.08 TCGA-HC-7745-01 11 125472775 125472775 G A STT3A Missense_Mutation p.V117M 0.29 deleterious(0) probably_damaging(1) TCGA-HC-7745-01 11 61574167 61574167 C T FADS1 Silent p.P315P 0.14 TCGA-HC-7745-01 11 77924826 77924826 C T USP35 Silent p.G1008G 0.05 TCGA-HC-7745-01 12 10147815 10147815 G A CLEC1B Missense_Mutation p.R157C 0.15 deleterious(0) probably_damaging(0.999) TCGA-HC-7745-01 12 49725500 49725500 A G TROAP 3'UTR 0.12 TCGA-HC-7745-01 15 35085746 35085746 T G ACTC1 Missense_Mutation p.K52Q 0.14 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-HC-7745-01 15 65234714 65234714 G T ANKDD1A Missense_Mutation p.L306F 0.07 deleterious(0.04) probably_damaging(0.949) TCGA-HC-7745-01 15 90293435 90293435 A C MESP1 Silent p.A249A 0.13 TCGA-HC-7745-01 16 24105528 24105528 T C PRKCB Missense_Mutation p.I244T 0.24 deleterious(0.01) benign(0.098) TCGA-HC-7745-01 16 30594188 30594188 C A ZNF785 Missense_Mutation p.R304L 0.07 deleterious(0) benign(0.437) TCGA-HC-7745-01 17 42083486 42083486 G A NAGS Missense_Mutation p.A266T 0.12 tolerated(0.34) benign(0.013) TCGA-HC-7745-01 17 56585536 56585536 G A MTMR4 Silent p.P217P 0.28 TCGA-HC-7745-01 19 17865953 17865953 G A FCHO1 5'UTR 0.21 TCGA-HC-7745-01 19 46095073 46095073 G A GPR4 Missense_Mutation p.L18F 0.12 tolerated(0.4) benign(0.006) TCGA-HC-7745-01 1 114256026 114256026 T C PHTF1 Missense_Mutation p.T220A 0.11 deleterious(0.05) benign(0.001) TCGA-HC-7745-01 1 152282808 152282808 A G FLG Silent p.H1518H 0.14 TCGA-HC-7745-01 1 159410187 159410187 T G OR10J1 Missense_Mutation p.S213R 0.15 deleterious(0.01) possibly_damaging(0.656) TCGA-HC-7745-01 1 231471575 231471575 C T EXOC8 Silent p.L639L 0.14 TCGA-HC-7745-01 1 236749185 236749185 G T HEATR1 Missense_Mutation p.Q662K 0.06 tolerated(0.27) benign(0.003) TCGA-HC-7745-01 21 37617884 37617884 C T DOPEY2 Silent p.L1202L 0.11 TCGA-HC-7745-01 3 167277926 167277926 C T WDR49 Missense_Mutation p.A193T 0.15 deleterious(0.02) probably_damaging(0.943) TCGA-HC-7745-01 3 184936017 184936017 A C EHHADH Missense_Mutation p.L159V 0.21 tolerated(0.27) benign(0.155) TCGA-HC-7745-01 4 146032204 146032204 A C ABCE1 Missense_Mutation p.Q233P 0.07 deleterious(0) probably_damaging(0.962) TCGA-HC-7745-01 4 52883592 52883592 G A LRRC66 Missense_Mutation p.A63V 0.10 tolerated(0.45) benign(0.017) TCGA-HC-7745-01 4 82064095 82064095 G A PRKG2 Silent p.S420S 0.14 TCGA-HC-7745-01 5 43700278 43700278 T G NNT Silent p.A978A 0.22 TCGA-HC-7745-01 5 94022425 94022425 T G ANKRD32 Splice_Site p.X707_splice 0.16 TCGA-HC-7745-01 6 26027359 26027359 C T HIST1H4B Missense_Mutation p.R41H 0.06 tolerated_low_confidence(0.1) probably_damaging(0.961) TCGA-HC-7745-01 6 38810577 38810577 A T DNAH8 Missense_Mutation p.R1364S 0.18 probably_damaging(0.981) TCGA-HC-7745-01 7 1024635 1024635 G A CYP2W1 Silent p.T129T 0.12 TCGA-HC-7745-01 8 30701810 30701810 G A TEX15 Missense_Mutation p.T1575M 0.08 tolerated(0.49) benign(0.001) TCGA-HC-7745-01 9 23701423 23701423 T C ELAVL2 Missense_Mutation p.N223D 0.12 tolerated(0.34) benign(0) TCGA-HC-7745-01 X 113965800 113965800 C T HTR2C Missense_Mutation p.R45C 0.25 deleterious(0.03) possibly_damaging(0.735) TCGA-HC-7745-01 X 1755354 1755354 C T ASMT Missense_Mutation p.P271S 0.06 deleterious(0) probably_damaging(0.987) TCGA-HC-7747-01 10 26513522 26513522 G T GAD2 Missense_Mutation p.K222N 0.04 deleterious(0.04) benign(0.347) TCGA-HC-7747-01 10 53458034 53458034 C T CSTF2T Missense_Mutation p.E426K 0.08 tolerated_low_confidence(0.19) benign(0.104) TCGA-HC-7747-01 11 74904264 74904264 C A SLCO2B1 Silent p.V359V 0.04 TCGA-HC-7747-01 12 110777198 110777199 - G ATP2A2 Frame_Shift_Ins p.F512Vfs*7 0.18 TCGA-HC-7747-01 12 49398943 49398943 C A PRKAG1 Missense_Mutation p.Q114H 0.04 deleterious(0.03) benign(0.036) TCGA-HC-7747-01 12 56481660 56481660 C T ERBB3 Missense_Mutation p.A232V 0.04 deleterious(0) probably_damaging(1) TCGA-HC-7747-01 14 100613237 100613237 T G DEGS2 Missense_Mutation p.K278T 0.09 deleterious(0.03) possibly_damaging(0.456) TCGA-HC-7747-01 15 42147470 42147470 C T SPTBN5 Silent p.A3125A 0.06 TCGA-HC-7747-01 15 78790472 78790472 G A IREB2 Missense_Mutation p.R960Q 0.05 deleterious(0) possibly_damaging(0.787) TCGA-HC-7747-01 15 81427611 81427611 G T C15orf26 Nonsense_Mutation p.E24* 0.08 TCGA-HC-7747-01 15 89398620 89398620 G A ACAN Missense_Mutation p.G935D 0.16 tolerated(0.33) benign(0.103) TCGA-HC-7747-01 15 92706449 92706449 C A SLCO3A1 3'UTR 0.15 TCGA-HC-7747-01 16 58437218 58437218 T C GINS3 Missense_Mutation p.S174P 0.29 deleterious(0.01) possibly_damaging(0.88) TCGA-HC-7747-01 16 64984879 64984879 C T CDH11 Missense_Mutation p.R562Q 0.06 tolerated(0.17) benign(0.341) TCGA-HC-7747-01 17 18023207 18023207 G A MYO15A Missense_Mutation p.D365N 0.03 possibly_damaging(0.555) TCGA-HC-7747-01 17 55917219 55917219 C A MRPS23 Missense_Mutation p.E166D 0.06 tolerated(0.1) benign(0.002) TCGA-HC-7747-01 19 15739644 15739644 C T CYP4F8 RNA 0.07 TCGA-HC-7747-01 19 1615477 1615477 C T TCF3 Silent p.K543K 0.26 TCGA-HC-7747-01 19 38858384 38858384 C T CATSPERG Silent p.D966D 0.06 TCGA-HC-7747-01 19 39826693 39826693 C T GMFG 5'UTR 0.13 TCGA-HC-7747-01 1 158627418 158627418 C T SPTA1 Missense_Mutation p.R885H 0.07 tolerated(0.08) benign(0.007) TCGA-HC-7747-01 1 247712451 247712451 G T GCSAML 5'UTR 0.05 TCGA-HC-7747-01 1 46736426 46736426 C T RAD54L Missense_Mutation p.R380W 0.06 deleterious(0) probably_damaging(0.968) TCGA-HC-7747-01 1 65142590 65142590 C T CACHD1 Silent p.C945C 0.11 TCGA-HC-7747-01 20 17640835 17640835 A G RRBP1 Silent p.A106A 0.15 TCGA-HC-7747-01 2 170136033 170136033 G A LRP2 Silent p.L472L 0.19 TCGA-HC-7747-01 2 220251660 220251660 C T DNPEP Missense_Mutation p.S58N 0.16 tolerated(0.3) benign(0.063) TCGA-HC-7747-01 2 24406452 24406452 T A FAM228A Nonsense_Mutation p.C113* 0.06 TCGA-HC-7747-01 2 74750268 74750268 C T DQX1 Silent p.L374L 0.03 TCGA-HC-7747-01 3 133358890 133358890 C T TOPBP1 Missense_Mutation p.V716I 0.13 tolerated(0.06) possibly_damaging(0.668) TCGA-HC-7747-01 3 196735710 196735710 T G MFI2 Missense_Mutation p.E551A 0.07 deleterious(0) probably_damaging(0.997) TCGA-HC-7747-01 3 38743403 38743403 G A SCN10A Silent p.F1528F 0.15 TCGA-HC-7747-01 4 76507096 76507096 G A CDKL2 Missense_Mutation p.P477S 0.14 deleterious_low_confidence(0.03) benign(0.005) TCGA-HC-7747-01 5 146070770 146070770 C T PPP2R2B Missense_Mutation p.R126H 0.09 deleterious(0) probably_damaging(0.933) TCGA-HC-7747-01 5 80548571 80548571 C T CKMT2 Silent p.P70P 0.12 TCGA-HC-7747-01 6 10784683 10784683 T C MAK Missense_Mutation p.Y480C 0.06 deleterious(0) probably_damaging(0.998) TCGA-HC-7747-01 6 132645229 132645229 T G MOXD1 Silent p.I318I 0.06 TCGA-HC-7747-01 8 55540415 55540415 G A RP1 Missense_Mutation p.G1325R 0.19 tolerated(0.23) benign(0.002) TCGA-HC-7747-01 9 100132347 100132347 C T CCDC180 Missense_Mutation p.R1489W 0.11 deleterious(0) benign(0.025) TCGA-HC-7747-01 X 103432835 103432835 G A FAM199X Missense_Mutation p.A282T 0.05 tolerated_low_confidence(0.71) benign(0.086) TCGA-HC-7747-01 X 17744786 17744786 C T NHS Missense_Mutation p.R833C 0.04 deleterious(0) probably_damaging(0.999) TCGA-HC-7748-01 11 132177583 132177583 C T NTM Missense_Mutation p.A176V 0.14 tolerated(0.08) benign(0.036) TCGA-HC-7748-01 12 117969491 117969491 T G KSR2 Missense_Mutation p.K570T 0.06 deleterious(0.04) possibly_damaging(0.837) TCGA-HC-7748-01 12 123186916 123186916 G A HCAR2 Silent p.F305F 0.20 TCGA-HC-7748-01 12 8197495 8197495 G C FOXJ2 Missense_Mutation p.W253S 0.20 tolerated(0.98) probably_damaging(0.979) TCGA-HC-7748-01 12 8290795 8290795 G A CLEC4A Missense_Mutation p.R209H 0.07 tolerated(0.29) benign(0.009) TCGA-HC-7748-01 13 46357972 46357972 C T SIAH3 Missense_Mutation p.R119H 0.22 tolerated(0.48) benign(0) TCGA-HC-7748-01 18 56585911 56585911 C T ZNF532 Missense_Mutation p.P131L 0.28 deleterious(0) probably_damaging(0.999) TCGA-HC-7748-01 19 15338333 15338333 G T EPHX3 Missense_Mutation p.P333Q 0.22 deleterious(0.01) possibly_damaging(0.589) TCGA-HC-7748-01 19 35757262 35757262 T C LSR Missense_Mutation p.L308P 0.23 deleterious(0.02) possibly_damaging(0.851) TCGA-HC-7748-01 19 51466672 51466672 G A KLK6 Missense_Mutation p.R111C 0.07 deleterious(0) probably_damaging(0.93) TCGA-HC-7748-01 1 181702058 181702058 C T CACNA1E Missense_Mutation p.R946C 0.19 deleterious(0.04) possibly_damaging(0.689) TCGA-HC-7748-01 1 47717391 47717391 C A STIL Missense_Mutation p.S1095I 0.04 deleterious(0) probably_damaging(0.929) TCGA-HC-7748-01 1 92789789 92789789 G C RPAP2 Missense_Mutation p.G438R 0.22 deleterious(0) benign(0.377) TCGA-HC-7748-01 20 23860160 23860160 T C CST5 Missense_Mutation p.I52V 0.03 tolerated(0.31) benign(0.065) TCGA-HC-7748-01 20 279007 279007 C - ZCCHC3 Frame_Shift_Del p.R261Gfs*11 0.23 TCGA-HC-7748-01 2 170493058 170493058 A G PPIG Silent p.K430K 0.25 TCGA-HC-7748-01 2 206641226 206641226 G A NRP2 Intron 0.08 TCGA-HC-7748-01 3 15301184 15301184 C T SH3BP5 Intron 0.24 TCGA-HC-7748-01 3 44762640 44762640 A G ZNF502 Missense_Mutation p.T111A 0.07 tolerated(0.35) probably_damaging(0.935) TCGA-HC-7748-01 4 47938768 47938768 G C CNGA1 Silent p.L650L 0.26 TCGA-HC-7748-01 4 62903460 62903460 G A LPHN3 Silent p.E1133E 0.07 TCGA-HC-7748-01 5 14601484 14601487 TTGA - FAM105A Frame_Shift_Del p.D95Yfs*18 0.21 TCGA-HC-7748-01 5 5190127 5190127 G A ADAMTS16 Missense_Mutation p.S364N 0.18 deleterious(0.01) probably_damaging(0.914) TCGA-HC-7748-01 5 74063146 74063146 C A GFM2 5'UTR 0.21 TCGA-HC-7748-01 6 131216167 131216167 C T EPB41L2 Silent p.P443P 0.26 TCGA-HC-7748-01 6 29523919 29523919 T C UBD Missense_Mutation p.K79R 0.25 tolerated(0.88) benign(0.335) TCGA-HC-7748-01 7 99506411 99506411 T C TRIM4 Missense_Mutation p.R198G 0.26 deleterious(0.01) possibly_damaging(0.518) TCGA-HC-7748-01 8 10468680 10468680 C T RP1L1 Silent p.A976A 0.17 TCGA-HC-7748-01 8 118184959 118184959 C A SLC30A8 3'UTR 0.20 TCGA-HC-7748-01 8 56436598 56436598 C T XKR4 Missense_Mutation p.R589W 0.26 deleterious(0) probably_damaging(0.993) TCGA-HC-7748-01 8 86352079 86352079 C A CA3 Missense_Mutation p.T58N 0.06 tolerated(0.47) possibly_damaging(0.671) TCGA-HC-7748-01 9 119109476 119109476 G T PAPPA Missense_Mutation p.A1318S 0.07 deleterious(0.02) possibly_damaging(0.694) TCGA-HC-7749-01 10 102849597 102849597 G A TLX1NB Silent p.L22L 0.43 TCGA-HC-7749-01 10 13206131 13206131 A C MCM10 5'UTR 0.48 TCGA-HC-7749-01 10 59975932 59975932 T C IPMK Missense_Mutation p.I174V 0.32 deleterious(0.01) possibly_damaging(0.549) TCGA-HC-7749-01 11 124539286 124539286 T G SIAE Missense_Mutation p.T67P 0.31 tolerated(0.14) benign(0.021) TCGA-HC-7749-01 13 101833451 101833451 G A NALCN Intron 0.05 TCGA-HC-7749-01 13 84454931 84454931 G A SLITRK1 Nonsense_Mutation p.R238* 0.15 TCGA-HC-7749-01 14 21109305 21109305 G A OR6S1 Silent p.C182C 0.36 TCGA-HC-7749-01 14 75265762 75265768 GTCTCAT - YLPM1 Frame_Shift_Del p.S1255Mfs*115 0.16 TCGA-HC-7749-01 14 92548749 92548749 C A ATXN3 Nonsense_Mutation p.E224* 0.30 TCGA-HC-7749-01 15 57837818 57837818 C T CGNL1 Missense_Mutation p.R1177W 0.07 deleterious(0) probably_damaging(1) TCGA-HC-7749-01 16 17221576 17221577 - T XYLT1 Frame_Shift_Ins p.V724Sfs*10 0.12 TCGA-HC-7749-01 16 75512471 75512471 C T CHST6 3'UTR 0.31 TCGA-HC-7749-01 17 10350362 10350362 C T MYH4 Missense_Mutation p.A1713T 0.36 tolerated(0.17) benign(0.012) TCGA-HC-7749-01 17 39150283 39150283 C G KRTAP3-3 Missense_Mutation p.D23H 0.04 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-HC-7749-01 17 78857260 78857260 C T RPTOR Silent p.I542I 0.29 TCGA-HC-7749-01 18 10540386 10540386 C G NAPG Missense_Mutation p.R166G 0.26 deleterious(0) possibly_damaging(0.859) TCGA-HC-7749-01 18 22008832 22008832 G A IMPACT Splice_Site p.X56_splice 0.11 TCGA-HC-7749-01 18 47110059 47110059 C T LIPG Missense_Mutation p.R431C 0.17 deleterious(0.02) probably_damaging(0.932) TCGA-HC-7749-01 19 12978320 12978320 C T MAST1 Silent p.H724H 0.03 TCGA-HC-7749-01 19 18285887 18285887 C A IFI30 Missense_Mutation p.S57Y 0.25 tolerated(0.08) possibly_damaging(0.544) TCGA-HC-7749-01 19 22155036 22155036 T C ZNF208 Missense_Mutation p.K934E 0.12 tolerated(1) unknown(0) TCGA-HC-7749-01 19 58319337 58319337 A G ZNF552 3'UTR 0.19 TCGA-HC-7749-01 19 9271565 9271565 A G ZNF317 Missense_Mutation p.K415R 0.36 deleterious(0.04) benign(0.032) TCGA-HC-7749-01 1 176857225 176857225 G A ASTN1 Missense_Mutation p.A1019V 0.06 deleterious(0) probably_damaging(0.996) TCGA-HC-7749-01 20 31643347 31643347 G A BPIFB3 Missense_Mutation p.G40S 0.28 tolerated(0.37) benign(0.016) TCGA-HC-7749-01 21 31971188 31971188 G C KRTAP6-2 Missense_Mutation p.C2W 0.12 unknown(0) TCGA-HC-7749-01 21 32639279 32639279 C T TIAM1 Missense_Mutation p.A4T 0.28 tolerated_low_confidence(0.15) benign(0.005) TCGA-HC-7749-01 21 45679320 45679320 C T DNMT3L Missense_Mutation p.R115Q 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-HC-7749-01 22 31346413 31346413 C T MORC2 5'UTR 0.13 TCGA-HC-7749-01 22 37271705 37271705 G A NCF4 Missense_Mutation p.R213Q 0.06 tolerated(0.12) benign(0.031) TCGA-HC-7749-01 2 116520170 116520170 C T DPP10 Missense_Mutation p.T370M 0.20 tolerated(0.13) benign(0.066) TCGA-HC-7749-01 2 121726332 121726332 G A GLI2 Missense_Mutation p.R229H 0.07 deleterious(0) probably_damaging(0.996) TCGA-HC-7749-01 2 158272196 158272196 C T CYTIP Missense_Mutation p.R358H 0.15 tolerated(0.13) probably_damaging(0.999) TCGA-HC-7749-01 2 179408725 179408725 C T TTN Missense_Mutation p.S32049N 0.16 TCGA-HC-7749-01 2 190640394 190640394 G T ORMDL1 Missense_Mutation p.P75T 0.29 tolerated(0.52) probably_damaging(1) TCGA-HC-7749-01 2 37310452 37310453 - T HEATR5B Frame_Shift_Ins p.V36Sfs*19 0.26 TCGA-HC-7749-01 2 40366712 40366712 C A SLC8A1 Missense_Mutation p.V792F 0.25 deleterious(0) probably_damaging(0.936) TCGA-HC-7749-01 3 111793168 111793168 T A TMPRSS7 Missense_Mutation p.F438L 0.07 deleterious(0.01) benign(0.366) TCGA-HC-7749-01 3 124527930 124527930 C G ITGB5 Missense_Mutation p.C401S 0.14 deleterious(0.03) probably_damaging(1) TCGA-HC-7749-01 3 126207086 126207086 C T UROC1 Missense_Mutation p.R642H 0.03 deleterious(0) probably_damaging(0.998) TCGA-HC-7749-01 3 140406842 140406842 G A TRIM42 Missense_Mutation p.V440M 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-HC-7749-01 3 183273149 183273149 C G KLHL6 Missense_Mutation p.R98T 0.06 deleterious(0) probably_damaging(1) TCGA-HC-7749-01 3 9804662 9804662 A T CAMK1 Missense_Mutation p.I122N 0.30 deleterious(0) probably_damaging(0.997) TCGA-HC-7749-01 4 102001731 102001731 T A PPP3CA Missense_Mutation p.I305F 0.38 deleterious(0) benign(0.329) TCGA-HC-7749-01 5 150029504 150029504 G A SYNPO Missense_Mutation p.R800H 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-HC-7749-01 5 150891839 150891839 G A FAT2 Missense_Mutation p.T3931M 0.06 benign(0.439) TCGA-HC-7749-01 5 92956621 92956621 G A FAM172A 3'UTR 0.12 TCGA-HC-7749-01 6 151917594 151917594 C T CCDC170 Missense_Mutation p.A531V 0.35 deleterious(0.05) possibly_damaging(0.676) TCGA-HC-7749-01 6 157454170 157454170 G A ARID1B Missense_Mutation p.A794T 0.25 benign(0.03) TCGA-HC-7749-01 6 74111706 74111706 G C DDX43 Missense_Mutation p.K187N 0.39 deleterious(0) possibly_damaging(0.887) TCGA-HC-7749-01 6 87969690 87969690 C T ZNF292 Nonsense_Mutation p.R2115* 0.31 TCGA-HC-7749-01 6 88854141 88854141 C T CNR1 Missense_Mutation p.V285I 0.18 tolerated(0.61) benign(0.016) TCGA-HC-7749-01 8 2806884 2806884 C A CSMD1 Nonsense_Mutation p.G3447* 0.27 TCGA-HC-7749-01 8 82591382 82591382 C T IMPA1 Missense_Mutation p.G153E 0.25 deleterious(0) probably_damaging(0.998) TCGA-HC-7749-01 9 100447235 100447235 T A XPA Nonsense_Mutation p.K215* 0.10 TCGA-HC-7749-01 9 79792744 79792744 C G VPS13A Intron 0.40 TCGA-HC-7749-01 9 95375385 95375385 C T CENPP Missense_Mutation p.A274V 0.29 deleterious(0) possibly_damaging(0.787) TCGA-HC-7749-01 X 130678204 130678204 C T OR13H1 Missense_Mutation p.P53S 0.56 tolerated(0.54) benign(0.003) TCGA-HC-7749-01 X 142718314 142718314 C G SLITRK4 Missense_Mutation p.R204P 0.59 tolerated(0.11) probably_damaging(0.999) TCGA-HC-7750-01 10 128147783 128147783 C T C10orf90 Missense_Mutation p.A575T 0.05 deleterious(0) probably_damaging(1) TCGA-HC-7750-01 11 56020136 56020136 T C OR5T3 Missense_Mutation p.V154A 0.04 tolerated(0.15) benign(0.049) TCGA-HC-7750-01 11 63764357 63764357 G T OTUB1 Nonsense_Mutation p.E123* 0.22 TCGA-HC-7750-01 13 42404698 42404698 T G VWA8 Missense_Mutation p.E556A 0.15 tolerated(0.12) benign(0.038) TCGA-HC-7750-01 16 9858484 9858484 C A GRIN2A Missense_Mutation p.D973Y 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-HC-7750-01 18 9936196 9936196 G C VAPA Missense_Mutation p.D108H 0.03 deleterious(0) probably_damaging(0.991) TCGA-HC-7750-01 19 57301240 57301240 C T ZIM2 Silent p.Q159Q 0.14 TCGA-HC-7750-01 1 12726522 12726522 G A AADACL4 Missense_Mutation p.A334T 0.03 tolerated(0.06) possibly_damaging(0.595) TCGA-HC-7750-01 1 213009355 213009355 A G C1orf227 Missense_Mutation p.V46A 0.14 tolerated(1) benign(0) TCGA-HC-7750-01 1 40535451 40535451 T - CAP1 Frame_Shift_Del p.F300Sfs*42 0.13 TCGA-HC-7750-01 22 50862022 50862022 C T PPP6R2 Silent p.L369L 0.07 TCGA-HC-7750-01 2 29074004 29074004 C T TRMT61B Missense_Mutation p.D416N 0.08 tolerated(0.15) benign(0.032) TCGA-HC-7750-01 2 48718172 48718172 A G PPP1R21 Missense_Mutation p.S488G 0.15 tolerated(0.06) benign(0.002) TCGA-HC-7750-01 2 88887559 88887559 T C EIF2AK3 Missense_Mutation p.D457G 0.05 tolerated(0.12) possibly_damaging(0.771) TCGA-HC-7750-01 5 94956112 94956112 C G GPR150 Missense_Mutation p.R45G 0.18 deleterious(0.02) benign(0.195) TCGA-HC-7750-01 6 151152162 151152162 G A PLEKHG1 Missense_Mutation p.G639R 0.12 tolerated(0.18) benign(0.056) TCGA-HC-7750-01 7 148288133 148288133 G A C7orf33 Missense_Mutation p.R39H 0.21 tolerated_low_confidence(0.19) benign(0) TCGA-HC-7750-01 7 70256054 70256054 C T AUTS2 3'UTR 0.64 TCGA-HC-7750-01 8 59410894 59410894 A G CYP7A1 Missense_Mutation p.M72T 0.19 tolerated(0.09) benign(0.142) TCGA-HC-7750-01 9 100071830 100071830 G A CCDC180 Silent p.Q112Q 0.09 TCGA-HC-7750-01 X 102931635 102931635 G A MORF4L2 Silent p.P107P 0.04 TCGA-HC-7752-01 10 123239400 123239400 G T FGFR2 Missense_Mutation p.P814T 0.09 tolerated(0.08) benign(0.135) TCGA-HC-7752-01 10 26575312 26575312 C G GAD2 Nonsense_Mutation p.Y425* 0.44 TCGA-HC-7752-01 10 46248088 46248088 G A FAM21C Silent p.S352S 0.39 TCGA-HC-7752-01 10 49791063 49791063 G A ARHGAP22 Missense_Mutation p.R57C 0.48 deleterious(0) probably_damaging(0.99) TCGA-HC-7752-01 11 10821136 10821136 G T EIF4G2 Missense_Mutation p.H763N 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-HC-7752-01 11 62361465 62361465 C G MTA2 Missense_Mutation p.R630P 0.39 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-HC-7752-01 12 62785633 62785634 - A USP15 Frame_Shift_Ins p.R760Kfs*4 0.44 TCGA-HC-7752-01 12 64491145 64491145 T G SRGAP1 Missense_Mutation p.I601M 0.35 tolerated(0.3) benign(0.259) TCGA-HC-7752-01 13 20067611 20067611 G A TPTE2 Silent p.T14T 0.13 TCGA-HC-7752-01 15 43654116 43654116 C A ZSCAN29 Nonsense_Mutation p.E572* 0.07 TCGA-HC-7752-01 16 51172768 51172768 A G SALL1 Missense_Mutation p.L1122P 0.30 deleterious(0) benign(0.097) TCGA-HC-7752-01 16 76532484 76532484 T C CNTNAP4 Missense_Mutation p.L680P 0.48 deleterious(0) probably_damaging(0.986) TCGA-HC-7752-01 17 4692290 4692290 C T GLTPD2 5'UTR 0.15 TCGA-HC-7752-01 17 73836164 73836164 G A UNC13D Missense_Mutation p.P296S 0.15 tolerated(0.76) benign(0.241) TCGA-HC-7752-01 17 80121090 80121090 G A CCDC57 Nonsense_Mutation p.R676* 0.37 TCGA-HC-7752-01 19 7624001 7624001 C G PNPLA6 Missense_Mutation p.F1231L 0.33 deleterious(0) benign(0.219) TCGA-HC-7752-01 1 153520902 153520902 T G S100A3 Silent p.A20A 0.07 TCGA-HC-7752-01 1 220922012 220922012 C T MARC2 Missense_Mutation p.R47W 0.27 deleterious(0.01) unknown(0) TCGA-HC-7752-01 1 75072309 75072309 C T C1orf173 Missense_Mutation p.D489N 0.37 tolerated(0.19) benign(0.071) TCGA-HC-7752-01 20 44167989 44167989 G C WFDC6 Missense_Mutation p.Q20E 0.47 deleterious(0.04) possibly_damaging(0.728) TCGA-HC-7752-01 21 46900696 46900696 G A COL18A1 Missense_Mutation p.S692N 0.41 benign(0.096) TCGA-HC-7752-01 22 44585032 44585032 G A PARVG Missense_Mutation p.A96T 0.10 tolerated(0.4) possibly_damaging(0.879) TCGA-HC-7752-01 2 120223462 120223462 G A SCTR Missense_Mutation p.H136Y 0.07 tolerated(1) benign(0.007) TCGA-HC-7752-01 2 170493494 170493494 C T PPIG Nonsense_Mutation p.R576* 0.05 TCGA-HC-7752-01 2 239096826 239096826 G A ILKAP Missense_Mutation p.A124V 0.52 deleterious(0) probably_damaging(0.934) TCGA-HC-7752-01 3 119176912 119176912 T G TMEM39A Missense_Mutation p.T97P 0.04 deleterious(0) possibly_damaging(0.584) TCGA-HC-7752-01 3 179320488 179320488 C A MRPL47 Nonsense_Mutation p.E66* 0.36 TCGA-HC-7752-01 4 187093233 187093233 G A FAM149A 3'UTR 0.45 TCGA-HC-7752-01 4 69682325 69682326 - C UGT2B10 Frame_Shift_Ins p.M197Hfs*6 0.37 TCGA-HC-7752-01 4 69682326 69682326 A C UGT2B10 Missense_Mutation p.M197L 0.38 tolerated(1) benign(0.004) TCGA-HC-7752-01 4 7811388 7811388 G C AFAP1 Missense_Mutation p.S336C 0.31 tolerated(0.08) possibly_damaging(0.873) TCGA-HC-7752-01 5 153190627 153190627 C T GRIA1 Missense_Mutation p.R865W 0.37 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-HC-7752-01 5 33576475 33576475 C A ADAMTS12 Missense_Mutation p.G1219V 0.45 tolerated(0.07) possibly_damaging(0.448) TCGA-HC-7752-01 5 6738818 6738818 G A PAPD7 Missense_Mutation p.S38N 0.43 deleterious(0.04) probably_damaging(0.992) TCGA-HC-7752-01 6 43418675 43418675 G A DLK2 Missense_Mutation p.P252S 0.36 tolerated(0.22) benign(0.001) TCGA-HC-7752-01 7 107569561 107569561 G A LAMB1 Missense_Mutation p.A1612V 0.04 deleterious(0) probably_damaging(0.987) TCGA-HC-7752-01 7 99753343 99753343 G A C7orf43 Missense_Mutation p.A449V 0.04 deleterious(0.04) benign(0.202) TCGA-HC-7752-01 8 71496023 71496023 G A TRAM1 Missense_Mutation p.S251F 0.46 deleterious(0.01) possibly_damaging(0.908) TCGA-HC-7752-01 9 98220566 98220566 G T PTCH1 Missense_Mutation p.A966E 0.11 deleterious(0) probably_damaging(0.995) TCGA-HC-7752-01 X 138678882 138678882 G A MCF2 Silent p.S777S 0.10 TCGA-HC-7752-01 Y 4968733 4968733 C T PCDH11Y Silent p.S1038S 0.06 TCGA-HC-7817-01 11 113196336 113196336 A G TTC12 Missense_Mutation p.D138G 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-HC-7817-01 11 46801810 46801810 A C CKAP5 Silent p.S789S 0.18 TCGA-HC-7817-01 11 533309 533309 G A HRAS Intron 0.09 TCGA-HC-7817-01 11 59245336 59245336 C G OR4D10 Missense_Mutation p.T145R 0.13 deleterious(0.01) benign(0.251) TCGA-HC-7817-01 12 125299595 125299595 C T SCARB1 Missense_Mutation p.R117H 0.05 deleterious(0.01) probably_damaging(0.924) TCGA-HC-7817-01 12 51855065 51855065 T A SLC4A8 Missense_Mutation p.M364K 0.07 deleterious(0.02) probably_damaging(0.99) TCGA-HC-7817-01 14 22964913 22964913 C T TRAJ43 Missense_Mutation p.R7C 0.11 unknown(0) TCGA-HC-7817-01 14 24793576 24793576 C T ADCY4 Silent p.T615T 0.10 TCGA-HC-7817-01 16 77228355 77228380 CACTTACACGTGCAAGTGTCGCCCGC - MON1B Frame_Shift_Del p.T200Nfs*9 0.09 TCGA-HC-7817-01 17 45668127 45668127 G A NPEPPS Nonsense_Mutation p.W380* 0.09 TCGA-HC-7817-01 19 13616783 13616783 C T CACNA1A Missense_Mutation p.V86M 0.20 possibly_damaging(0.791) TCGA-HC-7817-01 1 110906360 110906360 C G SLC16A4 3'UTR 0.07 TCGA-HC-7817-01 1 111061227 111061227 C T KCNA10 Silent p.T61T 0.04 TCGA-HC-7817-01 1 160187426 160187426 C T DCAF8 Missense_Mutation p.D738N 0.09 tolerated(0.05) benign(0.223) TCGA-HC-7817-01 1 202861726 202861726 C T KLHL12 Missense_Mutation p.E548K 0.10 tolerated(0.8) benign(0.002) TCGA-HC-7817-01 1 202861756 202861756 C T KLHL12 Missense_Mutation p.E538K 0.10 deleterious(0) probably_damaging(1) TCGA-HC-7817-01 20 57767498 57767498 C T ZNF831 Missense_Mutation p.T475M 0.12 deleterious(0.01) possibly_damaging(0.68) TCGA-HC-7817-01 21 28327086 28327086 G A ADAMTS5 Silent p.H403H 0.14 TCGA-HC-7817-01 22 21354950 21354950 T C THAP7 Silent p.R121R 0.13 TCGA-HC-7817-01 22 41573200 41573200 C T EP300 Missense_Mutation p.R1829C 0.09 probably_damaging(0.982) TCGA-HC-7817-01 2 63101583 63101583 G A EHBP1 Silent p.P402P 0.13 TCGA-HC-7817-01 5 157158368 157158368 T C THG1L 5'UTR 0.19 TCGA-HC-7817-01 6 43623376 43623376 C T RSPH9 Silent p.G142G 0.12 TCGA-HC-7817-01 7 151878166 151878166 G C KMT2C Missense_Mutation p.A2260G 0.19 benign(0.005) TCGA-HC-7817-01 8 26366213 26366213 G T PNMA2 Nonsense_Mutation p.S20* 0.14 TCGA-HC-7817-01 9 129458133 129458133 G A LMX1B Missense_Mutation p.R312H 0.10 tolerated(0.12) possibly_damaging(0.703) TCGA-HC-7817-01 9 90321394 90321394 C G DAPK1 Missense_Mutation p.H1136Q 0.06 tolerated(0.16) benign(0.086) TCGA-HC-7818-01 10 26559616 26559616 C T GAD2 Silent p.Y341Y 0.09 TCGA-HC-7818-01 10 98806792 98806792 C T SLIT1 Silent p.L555L 0.08 TCGA-HC-7818-01 11 104915359 104915359 G T CARD16 Missense_Mutation p.L12M 0.08 tolerated(0.12) possibly_damaging(0.905) TCGA-HC-7818-01 11 20409624 20409624 G T PRMT3 Nonsense_Mutation p.E30* 0.11 TCGA-HC-7818-01 12 27934042 27934042 G A KLHL42 Missense_Mutation p.G260E 0.07 deleterious(0) probably_damaging(1) TCGA-HC-7818-01 12 53897517 53897517 C G TARBP2 Missense_Mutation p.S116C 0.03 tolerated(0.07) benign(0.174) TCGA-HC-7818-01 12 54757587 54757587 G A GPR84 Silent p.L17L 0.10 TCGA-HC-7818-01 12 86374058 86374058 C T MGAT4C Missense_Mutation p.R149H 0.08 tolerated(0.56) benign(0.125) TCGA-HC-7818-01 17 39165307 39165307 C T KRTAP3-1 Missense_Mutation p.R7H 0.09 tolerated_low_confidence(0.19) benign(0.364) TCGA-HC-7818-01 17 7366047 7366047 A C ZBTB4 Missense_Mutation p.S752A 0.04 benign(0.009) TCGA-HC-7818-01 19 12155304 12155305 TT - ZNF878 Frame_Shift_Del p.K304Tfs*8 0.09 TCGA-HC-7818-01 19 17743610 17743610 G A UNC13A Missense_Mutation p.R1137C 0.04 deleterious(0.05) possibly_damaging(0.513) TCGA-HC-7818-01 19 36582178 36582178 C T WDR62 Missense_Mutation p.S704L 0.07 deleterious(0) probably_damaging(0.98) TCGA-HC-7818-01 19 50957350 50957350 C T MYBPC2 Missense_Mutation p.A608V 0.16 tolerated(0.07) possibly_damaging(0.537) TCGA-HC-7818-01 19 58927216 58927216 G A ZNF584 Intron 0.10 TCGA-HC-7818-01 1 17548935 17548935 C A PADI1 Silent p.G81G 0.06 TCGA-HC-7818-01 1 237664181 237664181 G A RYR2 Missense_Mutation p.V792I 0.05 benign(0.334) TCGA-HC-7818-01 22 23011003 23011003 G T IGLV3-27 Missense_Mutation p.E22D 0.03 tolerated(0.42) benign(0.02) TCGA-HC-7818-01 2 180008456 180008456 C A SESTD1 Missense_Mutation p.D238Y 0.05 deleterious(0) possibly_damaging(0.656) TCGA-HC-7818-01 2 26672885 26672885 C G DRC1 Missense_Mutation p.L511V 0.09 deleterious(0.02) possibly_damaging(0.628) TCGA-HC-7818-01 2 7030377 7030377 T C RSAD2 Missense_Mutation p.V270A 0.04 tolerated(0.11) benign(0.028) TCGA-HC-7818-01 3 47163454 47163454 T A SETD2 Missense_Mutation p.K891M 0.13 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-HC-7818-01 4 120240226 120240226 T - FABP2 Frame_Shift_Del p.E124Kfs*66 0.08 TCGA-HC-7818-01 6 149903651 149903651 C G GINM1 Missense_Mutation p.Q265E 0.08 tolerated(0.67) benign(0.02) TCGA-HC-7818-01 6 33287278 33287278 T C DAXX Missense_Mutation p.M607V 0.07 tolerated_low_confidence(1) benign(0) TCGA-HC-7818-01 7 107816881 107816881 C A NRCAM Missense_Mutation p.D1049Y 0.04 deleterious(0) possibly_damaging(0.886) TCGA-HC-7818-01 7 56172077 56172077 C A CHCHD2 Missense_Mutation p.A48S 0.12 tolerated(0.06) unknown(0) TCGA-HC-7818-01 7 64453295 64453295 G A ERV3-1 Missense_Mutation p.S37L 0.04 tolerated(0.08) benign(0.247) TCGA-HC-7818-01 8 124267245 124267245 A G ZHX1 Silent p.I314I 0.03 TCGA-HC-7818-01 8 82390995 82390995 T C FABP4 3'UTR 0.91 TCGA-HC-7818-01 9 95610657 95610657 G A ZNF484 Missense_Mutation p.R140C 0.04 deleterious(0.05) benign(0.27) TCGA-HC-7819-01 11 105948408 105948408 C G AASDHPPT 5'UTR 0.17 TCGA-HC-7819-01 14 42356070 42356070 C A LRFN5 Missense_Mutation p.T81N 0.42 deleterious(0) probably_damaging(0.997) TCGA-HC-7819-01 14 94780979 94780979 G A SERPINA6 Missense_Mutation p.L3F 0.12 tolerated(0.11) possibly_damaging(0.86) TCGA-HC-7819-01 17 35297661 35297661 A T LHX1 Missense_Mutation p.K82I 0.12 deleterious(0) probably_damaging(0.943) TCGA-HC-7819-01 17 56434877 56434877 C G RNF43 Missense_Mutation p.G754R 0.13 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-HC-7819-01 17 7155834 7155834 G C ELP5 Missense_Mutation p.E5Q 0.08 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-HC-7819-01 19 31770234 31770234 G A TSHZ3 Silent p.S155S 0.15 TCGA-HC-7819-01 19 31770237 31770237 A G TSHZ3 Silent p.S154S 0.14 TCGA-HC-7819-01 19 54969308 54969308 C G LENG8 Missense_Mutation p.C643W 0.10 deleterious(0) probably_damaging(0.999) TCGA-HC-7819-01 19 6416853 6416853 G A KHSRP Missense_Mutation p.P408L 0.14 tolerated(0.58) benign(0.326) TCGA-HC-7819-01 1 17953976 17953976 G T ARHGEF10L Missense_Mutation p.S521I 0.09 deleterious(0) probably_damaging(0.973) TCGA-HC-7819-01 1 46495849 46495849 T - MAST2 Frame_Shift_Del p.V831Gfs*45 0.14 TCGA-HC-7819-01 20 2988040 2988040 G A PTPRA Missense_Mutation p.D294N 0.33 deleterious(0.01) possibly_damaging(0.844) TCGA-HC-7819-01 21 46233855 46233855 C T SUMO3 Intron 0.08 TCGA-HC-7819-01 22 26937482 26937482 G C TPST2 Missense_Mutation p.R39G 0.06 tolerated_low_confidence(0.45) benign(0.015) TCGA-HC-7819-01 22 46785281 46785281 C A CELSR1 Missense_Mutation p.R2154L 0.07 tolerated(0.24) probably_damaging(0.983) TCGA-HC-7819-01 2 190557050 190557050 T C ANKAR Missense_Mutation p.F370S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-HC-7819-01 2 190584454 190584454 G A ANKAR Missense_Mutation p.C794Y 0.33 tolerated(0.33) benign(0) TCGA-HC-7819-01 2 209163430 209163439 CATCTGTCAG - PIKFYVE Frame_Shift_Del p.T326Ifs*27 0.32 TCGA-HC-7819-01 2 21231438 21231440 GAG - APOB In_Frame_Del p.P2767del 0.08 TCGA-HC-7819-01 3 100368589 100368589 C T GPR128 Silent p.N439N 0.04 TCGA-HC-7819-01 4 114277273 114277273 C T ANK2 Missense_Mutation p.T2500M 0.12 benign(0.02) TCGA-HC-7819-01 5 112175599 112175600 - A APC Frame_Shift_Ins p.T1438Nfs*17 0.12 TCGA-HC-7819-01 5 140772901 140772901 C T PCDHGA8 Missense_Mutation p.P174L 0.16 deleterious_low_confidence(0.03) benign(0.199) TCGA-HC-7819-01 5 153760070 153760070 G A GALNT10 Missense_Mutation p.D273N 0.08 tolerated(1) benign(0.005) TCGA-HC-7819-01 7 83640389 83640389 T G SEMA3A Missense_Mutation p.N315T 0.11 tolerated(0.57) benign(0.116) TCGA-HC-7819-01 7 92883177 92883177 T G CCDC132 Missense_Mutation p.L77R 0.46 deleterious(0) probably_damaging(0.951) TCGA-HC-7819-01 8 67705990 67705990 A G SGK3 Missense_Mutation p.M7V 0.39 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-HC-7819-01 X 73066504 73066504 A T XIST RNA 0.19 TCGA-HC-7820-01 10 76735743 76735743 A T KAT6B Missense_Mutation p.I550F 0.14 possibly_damaging(0.688) TCGA-HC-7820-01 11 128680431 128680431 G A FLI1 Missense_Mutation p.E303K 0.21 deleterious(0) probably_damaging(0.997) TCGA-HC-7820-01 11 65270216 65270217 TA - MALAT1 RNA 0.12 TCGA-HC-7820-01 11 7982031 7982031 C A NLRP10 Missense_Mutation p.E376D 0.26 tolerated(0.22) benign(0.02) TCGA-HC-7820-01 12 100706228 100706228 G C SCYL2 Missense_Mutation p.E217Q 0.06 deleterious(0.01) probably_damaging(0.985) TCGA-HC-7820-01 12 113532986 113532986 A G DTX1 Missense_Mutation p.Y509C 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-HC-7820-01 12 121094004 121094004 G A CABP1 Intron 0.06 TCGA-HC-7820-01 13 98655152 98655152 A G IPO5 Missense_Mutation p.Q471R 0.23 tolerated(0.52) benign(0.085) TCGA-HC-7820-01 14 103566589 103566589 G A EXOC3L4 Silent p.P11P 0.29 TCGA-HC-7820-01 14 20856080 20856080 G A TEP1 Missense_Mutation p.P890S 0.15 tolerated(0.14) benign(0.043) TCGA-HC-7820-01 14 74825501 74825501 A T VRTN Missense_Mutation p.K672M 0.24 deleterious(0) probably_damaging(0.957) TCGA-HC-7820-01 15 93173520 93173520 C G FAM174B Missense_Mutation p.E134Q 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-HC-7820-01 16 66422312 66422312 G - CDH5 Frame_Shift_Del p.E198Sfs*14 0.11 TCGA-HC-7820-01 16 84229221 84229221 G A ADAD2 Missense_Mutation p.G406R 0.11 deleterious(0.01) possibly_damaging(0.633) TCGA-HC-7820-01 17 39296318 39296318 C T KRTAP4-6 Missense_Mutation p.R141H 0.07 tolerated(0.06) unknown(0) TCGA-HC-7820-01 19 38655514 38655514 G A SIPA1L3 Silent p.A1392A 0.24 TCGA-HC-7820-01 19 41704492 41704492 G C CYP2S1 Missense_Mutation p.G207R 0.06 tolerated(0.2) probably_damaging(0.932) TCGA-HC-7820-01 19 49364696 49364696 C A PLEKHA4 Missense_Mutation p.G110W 0.07 deleterious(0) probably_damaging(1) TCGA-HC-7820-01 19 54758846 54758846 G C LILRB5 Nonsense_Mutation p.S336* 0.10 TCGA-HC-7820-01 1 115489915 115489915 C A SYCP1 Missense_Mutation p.Q766K 0.15 deleterious(0.05) possibly_damaging(0.676) TCGA-HC-7820-01 1 16375645 16375646 CC - CLCNKB Frame_Shift_Del p.H230Lfs*51 0.18 TCGA-HC-7820-01 1 237753955 237753955 G A RYR2 Missense_Mutation p.G1275S 0.15 benign(0.001) TCGA-HC-7820-01 1 39888543 39888543 G C MACF1 Missense_Mutation p.V3312L 0.11 possibly_damaging(0.832) TCGA-HC-7820-01 22 36681972 36681972 G A MYH9 Missense_Mutation p.R1697C 0.12 probably_damaging(0.946) TCGA-HC-7820-01 2 233246234 233246234 C T ALPP Missense_Mutation p.A446V 0.31 deleterious(0.04) benign(0.29) TCGA-HC-7820-01 2 240900480 240900480 C A NDUFA10 3'UTR 0.23 TCGA-HC-7820-01 2 80529936 80529936 C T LRRTM1 Missense_Mutation p.D337N 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-HC-7820-01 2 88874185 88874185 T C EIF2AK3 Missense_Mutation p.K939R 0.19 deleterious(0) probably_damaging(1) TCGA-HC-7820-01 3 173322456 173322456 G A NLGN1 Missense_Mutation p.R23Q 0.24 tolerated_low_confidence(0.58) benign(0.007) TCGA-HC-7820-01 3 193361334 193361334 G A OPA1 Missense_Mutation p.M447I 0.18 deleterious(0) probably_damaging(0.954) TCGA-HC-7820-01 3 49004609 49004609 C T ARIH2 Nonsense_Mutation p.R147* 0.08 TCGA-HC-7820-01 4 109740459 109740459 T C COL25A1 Silent p.K624K 0.05 TCGA-HC-7820-01 4 15835906 15835906 G A CD38 Nonsense_Mutation p.W189* 0.32 TCGA-HC-7820-01 4 69198540 69198540 T C YTHDC1 Silent p.L333L 0.07 TCGA-HC-7820-01 6 32260980 32260982 CTT - C6orf10 In_Frame_Del p.K490del 0.20 TCGA-HC-7820-01 7 129989880 129989880 A G CPA5 Missense_Mutation p.E88G 0.09 deleterious(0.02) benign(0.314) TCGA-HC-7820-01 8 48739269 48739269 G T PRKDC Missense_Mutation p.R2910S 0.15 probably_damaging(0.938) TCGA-HC-7820-01 X 53105788 53105788 G T GPR173 5'UTR 0.22 TCGA-HC-7821-01 10 17142211 17142211 G A CUBN Missense_Mutation p.R520W 0.24 deleterious(0.01) possibly_damaging(0.791) TCGA-HC-7821-01 12 122613718 122613718 G T MLXIP Missense_Mutation p.R214L 0.11 deleterious(0) probably_damaging(0.99) TCGA-HC-7821-01 12 44142400 44142400 C A PUS7L Missense_Mutation p.R308L 0.08 tolerated(0.07) possibly_damaging(0.564) TCGA-HC-7821-01 13 32911291 32911291 A T BRCA2 Silent p.T933T 0.36 TCGA-HC-7821-01 14 76543017 76543017 C A IFT43 Missense_Mutation p.A98D 0.05 tolerated(0.63) probably_damaging(0.958) TCGA-HC-7821-01 15 31776773 31776773 C T OTUD7A Missense_Mutation p.R502H 0.28 tolerated(0.11) probably_damaging(0.994) TCGA-HC-7821-01 16 23555840 23555840 C G EARS2 Silent p.T160T 0.15 TCGA-HC-7821-01 16 62055221 62055221 C A CDH8 Missense_Mutation p.M29I 0.11 tolerated(0.33) benign(0.003) TCGA-HC-7821-01 17 39502452 39502452 A G KRT33A Silent p.C378C 0.38 TCGA-HC-7821-01 17 64873395 64873395 C T CACNG5 5'UTR 0.17 TCGA-HC-7821-01 18 56246187 56246187 C T ALPK2 Silent p.Q607Q 0.67 TCGA-HC-7821-01 19 54652183 54652183 G A CNOT3 Missense_Mutation p.G399R 0.38 tolerated(0.25) benign(0.043) TCGA-HC-7821-01 19 54754732 54754732 C A LILRB5 Missense_Mutation p.R565L 0.18 deleterious(0.03) possibly_damaging(0.611) TCGA-HC-7821-01 19 56466879 56466879 C T NLRP8 Silent p.T485T 0.43 TCGA-HC-7821-01 1 104113101 104113101 C A AMY2B Intron 0.09 TCGA-HC-7821-01 1 147084929 147084929 C T BCL9 Nonsense_Mutation p.R101* 0.04 TCGA-HC-7821-01 1 204228776 204228776 T C PLEKHA6 Missense_Mutation p.K206R 0.50 tolerated(0.19) benign(0.033) TCGA-HC-7821-01 1 207930436 207930436 C A CD46 Silent p.R59R 0.23 TCGA-HC-7821-01 1 237947227 237947227 C A RYR2 Missense_Mutation p.T4072K 0.28 possibly_damaging(0.483) TCGA-HC-7821-01 1 35223743 35223743 C T GJB5 Missense_Mutation p.T271I 0.47 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-HC-7821-01 1 36769470 36769470 G A THRAP3 Missense_Mutation p.G907D 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-HC-7821-01 20 16348168 16348168 C A KIF16B Missense_Mutation p.V1268F 0.37 tolerated_low_confidence(0.56) benign(0.018) TCGA-HC-7821-01 20 56726068 56726068 T G C20orf85 Silent p.L16L 0.53 TCGA-HC-7821-01 22 50716552 50716552 T C PLXNB2 Silent p.S1627S 0.08 TCGA-HC-7821-01 2 170062576 170062576 G A LRP2 Missense_Mutation p.R2505C 0.35 possibly_damaging(0.696) TCGA-HC-7821-01 2 31595150 31595150 G A XDH Silent p.Y600Y 0.40 TCGA-HC-7821-01 2 9484733 9484733 C T ASAP2 Missense_Mutation p.R308W 0.05 deleterious(0) probably_damaging(0.982) TCGA-HC-7821-01 4 107845001 107845001 G A DKK2 3'UTR 0.50 TCGA-HC-7821-01 4 145567943 145567943 G A HHIP Missense_Mutation p.C39Y 0.06 deleterious(0) probably_damaging(0.923) TCGA-HC-7821-01 5 140711225 140711225 C T PCDHGA1 Missense_Mutation p.A325V 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.523) TCGA-HC-7821-01 5 140856728 140856728 G A PCDHGC3 Missense_Mutation p.A349T 0.43 deleterious(0.05) possibly_damaging(0.781) TCGA-HC-7821-01 5 23527460 23527460 C T PRDM9 Missense_Mutation p.R755W 0.06 deleterious(0) probably_damaging(0.999) TCGA-HC-7821-01 7 98254301 98254301 C T NPTX2 Silent p.Y237Y 0.41 TCGA-HC-7821-01 8 48801155 48801155 C T PRKDC Missense_Mutation p.S1445N 0.54 benign(0.098) TCGA-HC-7821-01 X 119419025 119419025 G A TMEM255A Missense_Mutation p.R181W 0.65 deleterious(0) probably_damaging(0.976) TCGA-HC-7821-01 X 78216116 78216116 A T P2RY10 Missense_Mutation p.Q33H 0.11 tolerated(0.06) benign(0.013) TCGA-HC-8213-01 11 1027159 1027159 G A MUC6 Missense_Mutation p.R756W 0.05 unknown(0) TCGA-HC-8213-01 11 20139831 20139831 T C NAV2 3'UTR 0.44 TCGA-HC-8213-01 13 41705461 41705461 T A KBTBD6 Missense_Mutation p.Y396F 0.43 tolerated(0.13) benign(0.2) TCGA-HC-8213-01 16 3139130 3139130 G A ZSCAN10 Missense_Mutation p.R714C 0.26 deleterious(0) probably_damaging(0.999) TCGA-HC-8213-01 17 2606635 2606635 C - CLUH Frame_Shift_Del p.G113Afs*47 0.45 TCGA-HC-8213-01 17 72522000 72522000 G A CD300LB Missense_Mutation p.T123M 0.05 deleterious(0.04) benign(0.037) TCGA-HC-8213-01 17 72522097 72522097 G A CD300LB Missense_Mutation p.R91C 0.40 tolerated(0.19) possibly_damaging(0.781) TCGA-HC-8213-01 1 111216759 111216759 C T KCNA3 Missense_Mutation p.E225K 0.30 deleterious(0) probably_damaging(0.999) TCGA-HC-8213-01 1 151509267 151509267 G A CGN Missense_Mutation p.R1123Q 0.47 deleterious(0) probably_damaging(1) TCGA-HC-8213-01 1 181745355 181745355 G A CACNA1E Missense_Mutation p.R1753Q 0.42 deleterious(0.01) benign(0.238) TCGA-HC-8213-01 1 196711060 196711060 G A CFH Silent p.K1004K 0.05 TCGA-HC-8213-01 1 61921121 61921121 A G NFIA 3'UTR 0.10 TCGA-HC-8213-01 2 120438904 120438904 G A TMEM177 Missense_Mutation p.V159M 0.05 tolerated(0.19) benign(0.046) TCGA-HC-8213-01 3 62535600 62535600 C G CADPS Silent p.L648L 0.35 TCGA-HC-8213-01 3 89528621 89528621 C T EPHA3 Missense_Mutation p.T974M 0.17 tolerated(0.05) benign(0.005) TCGA-HC-8213-01 4 7725571 7725571 G A SORCS2 Missense_Mutation p.A858T 0.34 deleterious(0.03) possibly_damaging(0.713) TCGA-HC-8213-01 5 21854872 21854872 G C CDH12 Missense_Mutation p.T185R 0.44 deleterious(0) probably_damaging(0.938) TCGA-HC-8213-01 6 158514069 158514069 T A SYNJ2 Missense_Mutation p.L1226H 0.11 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-HC-8213-01 7 45750138 45750138 G T ADCY1 Missense_Mutation p.G982C 0.07 deleterious(0) probably_damaging(1) TCGA-HC-8213-01 9 134503405 134503405 A G RAPGEF1 Missense_Mutation p.S367P 0.17 deleterious(0.01) probably_damaging(0.974) TCGA-HC-8213-01 X 132351392 132351392 C T TFDP3 Missense_Mutation p.G299D 0.07 deleterious(0.02) probably_damaging(0.996) TCGA-HC-8216-01 10 102986816 102986816 G T LBX1 3'UTR 0.21 TCGA-HC-8216-01 10 11317020 11317020 C A CELF2 Missense_Mutation p.L260I 0.17 tolerated(0.06) possibly_damaging(0.463) TCGA-HC-8216-01 10 52103736 52103736 G A SGMS1 Missense_Mutation p.P47S 0.09 tolerated(0.1) benign(0.017) TCGA-HC-8216-01 10 75029381 75029381 G A TTC18 Silent p.V1076V 0.09 TCGA-HC-8216-01 10 86018433 86018433 G C RGR 3'UTR 0.08 TCGA-HC-8216-01 11 120996041 120996041 A T TECTA Missense_Mutation p.T412S 0.04 tolerated(1) benign(0.001) TCGA-HC-8216-01 11 16071443 16071443 G T SOX6 Silent p.P431P 0.05 TCGA-HC-8216-01 11 20099637 20099637 G T NAV2 Missense_Mutation p.E1778D 0.08 tolerated(1) probably_damaging(0.989) TCGA-HC-8216-01 11 20622994 20622994 C G SLC6A5 Missense_Mutation p.P108R 0.12 tolerated_low_confidence(0.47) benign(0.055) TCGA-HC-8216-01 11 33370281 33370281 C A HIPK3 Missense_Mutation p.D861E 0.06 tolerated(0.06) benign(0.011) TCGA-HC-8216-01 11 57995624 57995624 C A OR10Q1 Missense_Mutation p.A242S 0.07 deleterious(0.02) probably_damaging(1) TCGA-HC-8216-01 11 62290041 62290041 G A AHNAK Missense_Mutation p.P3950S 0.05 benign(0.272) TCGA-HC-8216-01 11 66999361 66999361 C A KDM2A Missense_Mutation p.S470Y 0.13 deleterious(0) possibly_damaging(0.526) TCGA-HC-8216-01 11 78443391 78443391 T C TENM4 Silent p.A1036A 0.28 TCGA-HC-8216-01 12 102151047 102151047 A T GNPTAB Missense_Mutation p.I1126N 0.09 deleterious(0) probably_damaging(0.971) TCGA-HC-8216-01 12 104046416 104046416 A G STAB2 Missense_Mutation p.Y447C 0.24 tolerated(0.18) benign(0.002) TCGA-HC-8216-01 12 108603945 108603945 G T WSCD2 Missense_Mutation p.G182V 0.07 deleterious(0) possibly_damaging(0.907) TCGA-HC-8216-01 12 108603946 108603946 C T WSCD2 Silent p.G182G 0.07 TCGA-HC-8216-01 12 11421037 11421037 C T PRB3 Missense_Mutation p.R49H 0.25 deleterious(0.03) unknown(0) TCGA-HC-8216-01 12 2997554 2997554 C T RHNO1 Nonsense_Mutation p.R216* 0.15 TCGA-HC-8216-01 12 49433964 49433964 G A KMT2D Missense_Mutation p.T2530I 0.10 possibly_damaging(0.614) TCGA-HC-8216-01 12 52820636 52820636 C A KRT75 Splice_Site p.X461_splice 0.10 TCGA-HC-8216-01 12 80749588 80749588 T C OTOGL Missense_Mutation p.L1880P 0.10 deleterious(0) probably_damaging(0.957) TCGA-HC-8216-01 12 96354372 96354372 G T AMDHD1 Missense_Mutation p.D262Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-HC-8216-01 13 101759839 101759839 C T NALCN Missense_Mutation p.A860T 0.11 tolerated(0.27) benign(0.024) TCGA-HC-8216-01 14 23938901 23938901 C A NGDN 5'UTR 0.16 TCGA-HC-8216-01 14 68272329 68272329 C T ZFYVE26 Missense_Mutation p.A342T 0.16 deleterious(0) probably_damaging(0.998) TCGA-HC-8216-01 15 31196925 31196925 G T FAN1 Missense_Mutation p.S20I 0.06 deleterious(0) benign(0.413) TCGA-HC-8216-01 15 33988496 33988496 C T RYR3 Nonsense_Mutation p.R1980* 0.17 TCGA-HC-8216-01 15 40313180 40313180 A G EIF2AK4 Silent p.K1418K 0.07 TCGA-HC-8216-01 15 48780649 48780649 C T FBN1 Missense_Mutation p.G1042S 0.07 probably_damaging(0.997) TCGA-HC-8216-01 15 62212501 62212501 A T VPS13C Missense_Mutation p.F2414L 0.10 tolerated(0.33) possibly_damaging(0.507) TCGA-HC-8216-01 15 73580727 73580727 G C NEO1 Missense_Mutation p.D1162H 0.12 deleterious(0) probably_damaging(1) TCGA-HC-8216-01 16 21690532 21690532 G T OTOA Missense_Mutation p.S60I 0.09 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-HC-8216-01 16 2903128 2903128 G T PRSS22 Missense_Mutation p.P307Q 0.10 deleterious(0.01) benign(0.227) TCGA-HC-8216-01 16 3334135 3334135 C A ZNF263 Missense_Mutation p.P106Q 0.06 deleterious(0.01) probably_damaging(1) TCGA-HC-8216-01 16 51173806 51173806 G A SALL1 Missense_Mutation p.T776M 0.14 deleterious(0) probably_damaging(1) TCGA-HC-8216-01 17 10248872 10248872 A T MYH13 Missense_Mutation p.V442D 0.07 deleterious(0) probably_damaging(0.999) TCGA-HC-8216-01 17 18205596 18205596 T C TOP3A Missense_Mutation p.I266V 0.19 tolerated(0.27) benign(0.002) TCGA-HC-8216-01 17 33324773 33324773 C T LIG3 Missense_Mutation p.R614W 0.09 deleterious(0) probably_damaging(1) TCGA-HC-8216-01 17 38062397 38062397 G A GSDMB Silent p.G285G 0.12 TCGA-HC-8216-01 17 39084808 39084808 C T KRT23 Missense_Mutation p.D230N 0.10 tolerated(0.23) benign(0.032) TCGA-HC-8216-01 17 56285908 56285908 A C MKS1 Missense_Mutation p.V354G 0.36 deleterious(0) possibly_damaging(0.861) TCGA-HC-8216-01 17 7578509 7578509 A C TP53 Missense_Mutation p.C141G 0.29 deleterious(0.01) probably_damaging(1) TCGA-HC-8216-01 18 39607410 39607410 T C PIK3C3 Silent p.Y496Y 0.07 TCGA-HC-8216-01 18 9547732 9547732 G T PPP4R1 3'UTR 0.28 TCGA-HC-8216-01 19 11233932 11233932 A T LDLR Silent p.T741T 0.10 TCGA-HC-8216-01 19 11687381 11687381 G A ACP5 Missense_Mutation p.R138C 0.31 deleterious(0.03) possibly_damaging(0.898) TCGA-HC-8216-01 19 17394177 17394177 A G ANKLE1 Missense_Mutation p.K202E 0.04 tolerated(0.73) benign(0.002) TCGA-HC-8216-01 19 3984203 3984203 C G EEF2 Missense_Mutation p.R50P 0.21 deleterious(0.03) benign(0.389) TCGA-HC-8216-01 19 4170156 4170156 C G CREB3L3 Missense_Mutation p.Q281E 0.05 deleterious(0.04) probably_damaging(0.992) TCGA-HC-8216-01 19 50461937 50461937 C A SIGLEC11 Silent p.L442L 0.07 TCGA-HC-8216-01 19 54778668 54778668 C A LILRB2 Missense_Mutation p.A556S 0.04 tolerated(0.33) benign(0.012) TCGA-HC-8216-01 19 55739730 55739730 C A TMEM86B Missense_Mutation p.D43Y 0.08 deleterious(0) possibly_damaging(0.885) TCGA-HC-8216-01 19 9086744 9086744 T A MUC16 Nonsense_Mutation p.R1691* 0.04 TCGA-HC-8216-01 1 151137675 151137675 C T LYSMD1 Silent p.R20R 0.31 TCGA-HC-8216-01 1 157804437 157804437 A T CD5L Missense_Mutation p.Y160N 0.14 tolerated(0.07) benign(0.002) TCGA-HC-8216-01 1 158585163 158585163 G A SPTA1 Missense_Mutation p.R2211C 0.18 deleterious(0.04) probably_damaging(0.976) TCGA-HC-8216-01 1 160850469 160850469 C T ITLN1 Silent p.K198K 0.05 TCGA-HC-8216-01 1 169582313 169582313 A G SELP Missense_Mutation p.L210P 0.19 tolerated(0.23) benign(0.012) TCGA-HC-8216-01 1 177927436 177927436 T A SEC16B Missense_Mutation p.Y399F 0.19 deleterious(0.04) benign(0.12) TCGA-HC-8216-01 1 178490298 178490298 G T TEX35 Intron 0.11 TCGA-HC-8216-01 1 209879155 209879155 G C HSD11B1 Splice_Site p.X30_splice 0.07 TCGA-HC-8216-01 1 248525215 248525215 C T OR2T4 Silent p.P111P 0.07 TCGA-HC-8216-01 1 50885066 50885066 C T DMRTA2 Silent p.A300A 0.08 TCGA-HC-8216-01 1 57480801 57480801 C T DAB1 Missense_Mutation p.S400N 0.08 tolerated(0.09) probably_damaging(0.999) TCGA-HC-8216-01 1 68944925 68944925 C A DEPDC1 Missense_Mutation p.V672F 0.11 deleterious(0) possibly_damaging(0.883) TCGA-HC-8216-01 20 30408169 30408169 C T MYLK2 Missense_Mutation p.P98L 0.15 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-HC-8216-01 20 30409476 30409476 G T MYLK2 Missense_Mutation p.E236D 0.15 deleterious(0.04) benign(0.345) TCGA-HC-8216-01 20 30897748 30897748 C G KIF3B Silent p.T56T 0.08 TCGA-HC-8216-01 20 57576623 57576623 G A CTSZ Silent p.N128N 0.05 TCGA-HC-8216-01 20 76981 76981 A T DEFB125 Missense_Mutation p.T132S 0.03 tolerated(0.41) possibly_damaging(0.636) TCGA-HC-8216-01 22 21349317 21349317 T G LZTR1 Splice_Site p.X648_splice 0.09 TCGA-HC-8216-01 2 113675255 113675255 G A IL37 Silent p.A103A 0.07 TCGA-HC-8216-01 2 128262666 128262666 G C IWS1 Silent p.P271P 0.10 TCGA-HC-8216-01 2 128477088 128477088 C A WDR33 Missense_Mutation p.Q837H 0.35 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-HC-8216-01 2 166245953 166245953 G T SCN2A Missense_Mutation p.M1879I 0.05 tolerated(0.09) probably_damaging(0.973) TCGA-HC-8216-01 2 166848422 166848422 T A SCN1A Missense_Mutation p.N1788I 0.04 deleterious(0.03) probably_damaging(1) TCGA-HC-8216-01 2 17696504 17696504 T C RAD51AP2 Missense_Mutation p.E1060G 0.16 deleterious(0.04) probably_damaging(0.999) TCGA-HC-8216-01 2 201438669 201438669 A C SGOL2 Missense_Mutation p.K1200N 0.06 deleterious(0.03) benign(0.059) TCGA-HC-8216-01 2 21258471 21258471 A G APOB Missense_Mutation p.L268P 0.06 benign(0.012) TCGA-HC-8216-01 2 220473351 220473351 G T STK11IP Missense_Mutation p.E561D 0.05 tolerated(0.38) benign(0.167) TCGA-HC-8216-01 2 228786194 228786194 G A DAW1 Missense_Mutation p.G377D 0.15 deleterious(0) probably_damaging(0.989) TCGA-HC-8216-01 2 234628298 234628309 GGCATCAACTGT - UGT1A4 In_Frame_Del p.G278_C281del 0.09 TCGA-HC-8216-01 2 242189366 242189366 A C HDLBP Missense_Mutation p.S468A 0.06 tolerated(0.23) benign(0.038) TCGA-HC-8216-01 2 242573471 242573471 C T THAP4 Missense_Mutation p.R34H 0.07 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HC-8216-01 2 242577076 242577076 T G ATG4B 5'UTR 0.06 TCGA-HC-8216-01 2 3691606 3691606 C T COLEC11 Silent p.D252D 0.06 TCGA-HC-8216-01 2 71300700 71300700 A T NAGK Missense_Mutation p.K231N 0.10 tolerated(0.36) possibly_damaging(0.821) TCGA-HC-8216-01 3 108754263 108754263 G A MORC1 Silent p.I461I 0.19 TCGA-HC-8216-01 3 126748316 126748316 A G PLXNA1 Missense_Mutation p.K1603E 0.06 deleterious(0) probably_damaging(0.994) TCGA-HC-8216-01 3 182586927 182586927 C T ATP11B Nonsense_Mutation p.Q584* 0.09 TCGA-HC-8216-01 3 182587059 182587059 C T ATP11B Silent p.L602L 0.16 TCGA-HC-8216-01 3 182587060 182587060 C T ATP11B Missense_Mutation p.P603S 0.16 deleterious(0.03) possibly_damaging(0.68) TCGA-HC-8216-01 3 183669276 183669276 G A ABCC5 Missense_Mutation p.T966I 0.05 deleterious(0) probably_damaging(0.99) TCGA-HC-8216-01 3 38592950 38592950 C A SCN5A Missense_Mutation p.R1638L 0.05 deleterious(0) probably_damaging(0.998) TCGA-HC-8216-01 3 38592951 38592951 G T SCN5A Silent p.R1638R 0.05 TCGA-HC-8216-01 3 62570916 62570916 A G CADPS Silent p.D507D 0.05 TCGA-HC-8216-01 3 89445000 89445000 C A EPHA3 Silent p.V440V 0.14 TCGA-HC-8216-01 3 9771372 9771372 C T CPNE9 Missense_Mutation p.P553L 0.09 deleterious_low_confidence(0) unknown(0) TCGA-HC-8216-01 4 188924707 188924707 T G ZFP42 Missense_Mutation p.F249C 0.17 deleterious(0) probably_damaging(0.999) TCGA-HC-8216-01 4 70074167 70074167 T A UGT2B11 Missense_Mutation p.N302Y 0.06 deleterious(0.03) benign(0.016) TCGA-HC-8216-01 5 135228145 135228145 A G IL9 Missense_Mutation p.F124L 0.12 deleterious(0) possibly_damaging(0.787) TCGA-HC-8216-01 5 137803632 137803632 G A EGR1 Silent p.T498T 0.07 TCGA-HC-8216-01 5 167642135 167642135 C G TENM2 Silent p.R1312R 0.05 TCGA-HC-8216-01 5 169507217 169507217 G A DOCK2 Silent p.A1739A 0.06 TCGA-HC-8216-01 5 427996 427996 G A AHRR Silent p.P283P 0.25 TCGA-HC-8216-01 5 89933655 89933655 T C GPR98 Silent p.F710F 0.09 TCGA-HC-8216-01 6 107827592 107827592 G A SOBP Missense_Mutation p.V128I 0.09 deleterious(0.01) probably_damaging(0.938) TCGA-HC-8216-01 6 109274248 109274248 C T ARMC2 Missense_Mutation p.R537C 0.24 deleterious(0) probably_damaging(1) TCGA-HC-8216-01 6 117662661 117662661 G A ROS1 Silent p.L1602L 0.05 TCGA-HC-8216-01 6 14131886 14131886 A C CD83 Missense_Mutation p.T97P 0.05 deleterious(0) probably_damaging(0.979) TCGA-HC-8216-01 6 142691627 142691627 G T GPR126 Missense_Mutation p.V256F 0.08 deleterious(0.01) benign(0.361) TCGA-HC-8216-01 6 151243383 151243383 C T MTHFD1L Missense_Mutation p.H343Y 0.29 tolerated(0.52) benign(0) TCGA-HC-8216-01 6 24503566 24503566 C T ALDH5A1 Missense_Mutation p.R172C 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-HC-8216-01 6 26234460 26234460 C A HIST1H1D 3'UTR 0.08 TCGA-HC-8216-01 6 33423613 33423613 C T ZBTB9 Missense_Mutation p.R246C 0.16 tolerated(0.14) benign(0.001) TCGA-HC-8216-01 6 70639416 70639416 C T COL19A1 Missense_Mutation p.R164C 0.11 tolerated(0.14) unknown(0) TCGA-HC-8216-01 6 85446703 85446703 G A TBX18 Silent p.F508F 0.08 TCGA-HC-8216-01 7 110763905 110763905 C G LRRN3 Missense_Mutation p.N359K 0.05 tolerated(0.07) possibly_damaging(0.825) TCGA-HC-8216-01 7 129853359 129853359 A T SSMEM1 Missense_Mutation p.T75S 0.08 tolerated(0.36) benign(0.005) TCGA-HC-8216-01 7 142120060 142120060 T A TRBV7-7 Missense_Mutation p.Q36L 0.08 deleterious(0) possibly_damaging(0.9) TCGA-HC-8216-01 7 8275624 8275624 T C ICA1 5'UTR 0.29 TCGA-HC-8216-01 7 83037758 83037758 T C SEMA3E Missense_Mutation p.D199G 0.35 deleterious(0) probably_damaging(1) TCGA-HC-8216-01 7 97614280 97614280 A G OCM2 Missense_Mutation p.V107A 0.42 deleterious(0.01) possibly_damaging(0.893) TCGA-HC-8216-01 7 99699309 99699309 C G AP4M1 5'UTR 0.10 TCGA-HC-8216-01 8 133740185 133740185 T C TMEM71 Missense_Mutation p.K160E 0.07 tolerated(0.34) benign(0.066) TCGA-HC-8216-01 8 143694473 143694473 G A ARC Missense_Mutation p.S387F 0.19 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-HC-8216-01 8 41529908 41529908 G A ANK1 Missense_Mutation p.P1728L 0.07 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-HC-8216-01 8 42038168 42038168 A T PLAT Missense_Mutation p.F309I 0.09 deleterious(0.01) benign(0.02) TCGA-HC-8216-01 8 61654328 61654328 G C CHD7 Missense_Mutation p.V113L 0.17 benign(0.097) TCGA-HC-8216-01 8 92999165 92999165 G C RUNX1T1 Missense_Mutation p.H354D 0.05 deleterious(0.04) benign(0.059) TCGA-HC-8216-01 9 107361057 107361057 A T OR13C5 Nonsense_Mutation p.L213* 0.04 TCGA-HC-8216-01 9 6554725 6554725 G T GLDC Missense_Mutation p.H753Q 0.10 deleterious(0) probably_damaging(0.996) TCGA-HC-8216-01 9 77390917 77390917 G T TRPM6 Nonsense_Mutation p.Y1095* 0.05 TCGA-HC-8216-01 X 132351872 132351872 G A TFDP3 Missense_Mutation p.A139V 0.08 tolerated(0.09) benign(0.002) TCGA-HC-8216-01 X 2876456 2876456 A G ARSE Missense_Mutation p.L15P 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-HC-8256-01 11 111938577 111938577 A G PIH1D2 3'UTR 0.27 TCGA-HC-8256-01 12 12980209 12980226 AACACTTAATTGGGAAGA - DDX47 In_Frame_Del p.H380_K385del 0.25 TCGA-HC-8256-01 14 50251653 50251653 C T NEMF Missense_Mutation p.R1048H 0.20 deleterious(0) probably_damaging(1) TCGA-HC-8256-01 15 85327345 85327345 G T ZNF592 Missense_Mutation p.G480V 0.08 tolerated(0.27) possibly_damaging(0.522) TCGA-HC-8256-01 16 1842475 1842475 G A IGFALS Missense_Mutation p.R20W 0.22 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-HC-8256-01 16 2770147 2770147 C T PRSS27 Silent p.A5A 0.50 TCGA-HC-8256-01 17 10404784 10404784 C T MYH1 Silent p.E1127E 0.07 TCGA-HC-8256-01 17 3379480 3379480 A G ASPA Silent p.E9E 0.20 TCGA-HC-8256-01 17 34934521 34934521 G A GGNBP2 Silent p.L250L 0.30 TCGA-HC-8256-01 17 7107378 7107378 C A DLG4 Missense_Mutation p.Q96H 0.16 tolerated(0.12) benign(0.038) TCGA-HC-8256-01 19 11560110 11560110 G A PRKCSH Missense_Mutation p.M490I 0.07 tolerated(0.23) benign(0.02) TCGA-HC-8256-01 19 15582853 15582853 C T PGLYRP2 Silent p.P397P 0.09 TCGA-HC-8256-01 19 19049576 19049576 G A HOMER3 Silent p.T44T 0.18 TCGA-HC-8256-01 19 38057181 38057181 C G ZNF571 Missense_Mutation p.S50T 0.16 tolerated(0.74) benign(0.011) TCGA-HC-8256-01 19 48306137 48306137 G A TPRX1 Missense_Mutation p.A44V 0.29 deleterious(0.02) unknown(0) TCGA-HC-8256-01 1 16890543 16890543 C G NBPF1 Missense_Mutation p.E1105D 0.06 deleterious_low_confidence(0.02) benign(0.291) TCGA-HC-8256-01 1 180793908 180793908 A T XPR1 Silent p.T261T 0.16 TCGA-HC-8256-01 20 36639973 36639973 T C TTI1 Missense_Mutation p.Y749C 0.09 deleterious(0) probably_damaging(0.952) TCGA-HC-8256-01 21 33318388 33318388 G A HUNK Silent p.S217S 0.14 TCGA-HC-8256-01 22 46835238 46835238 G A CELSR1 Silent p.C1418C 0.15 TCGA-HC-8256-01 2 132276262 132276262 G T AC093838.4 RNA 0.20 TCGA-HC-8256-01 3 193051645 193051645 G A ATP13A5 Missense_Mutation p.P389L 0.17 deleterious(0) probably_damaging(1) TCGA-HC-8256-01 4 77661470 77661470 A G SHROOM3 Missense_Mutation p.H715R 0.19 tolerated(0.13) benign(0.039) TCGA-HC-8256-01 4 88989084 88989084 G A PKD2 Missense_Mutation p.R798H 0.24 deleterious(0.01) benign(0.058) TCGA-HC-8256-01 5 112257910 112257910 G T REEP5 5'UTR 0.23 TCGA-HC-8256-01 5 89939768 89939768 T C GPR98 Missense_Mutation p.I901T 0.41 possibly_damaging(0.507) TCGA-HC-8256-01 6 128134393 128134393 C A THEMIS Missense_Mutation p.D465Y 0.12 deleterious(0) probably_damaging(1) TCGA-HC-8256-01 6 131973760 131973760 G A ENPP3 Missense_Mutation p.C119Y 0.25 deleterious(0) probably_damaging(1) TCGA-HC-8256-01 7 106508996 106508996 G T PIK3CG Silent p.T330T 0.24 TCGA-HC-8256-01 8 131859738 131859738 A T ADCY8 Missense_Mutation p.S812T 0.14 tolerated(0.48) benign(0.001) TCGA-HC-8256-01 8 24254909 24254909 G A ADAMDEC1 Silent p.V189V 0.20 TCGA-HC-8256-01 8 81897549 81897549 G C PAG1 Missense_Mutation p.S113W 0.12 deleterious(0) probably_damaging(1) TCGA-HC-8256-01 X 128638774 128638774 A - SMARCA1 Frame_Shift_Del p.F368Lfs*24 0.34 TCGA-HC-8256-01 X 144906446 144906446 G T SLITRK2 Missense_Mutation p.V835F 0.59 deleterious(0) possibly_damaging(0.887) TCGA-HC-8256-01 X 24861702 24861702 A G POLA1 Missense_Mutation p.I1313V 0.49 tolerated(0.29) benign(0.005) TCGA-HC-8256-01 X 99661653 99661653 C A PCDH19 Missense_Mutation p.G648V 0.11 deleterious(0) probably_damaging(1) TCGA-HC-8257-01 10 26506583 26506583 G A GAD2 Missense_Mutation p.G41R 0.09 deleterious_low_confidence(0) possibly_damaging(0.657) TCGA-HC-8257-01 10 73553231 73553231 C T CDH23 5'Flank 0.06 TCGA-HC-8257-01 10 99344570 99344570 G C PI4K2A Missense_Mutation p.G37A 0.08 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-HC-8257-01 11 19077806 19077806 G A MRGPRX2 Silent p.N48N 0.33 TCGA-HC-8257-01 11 46690391 46690391 C T ATG13 Silent p.S459S 0.07 TCGA-HC-8257-01 11 6592175 6592175 G A DNHD1 Missense_Mutation p.R4478Q 0.29 benign(0.019) TCGA-HC-8257-01 12 107371603 107371603 G A MTERFD3 Missense_Mutation p.P297L 0.33 deleterious(0.04) possibly_damaging(0.501) TCGA-HC-8257-01 12 130648192 130648192 G A FZD10 Silent p.A235A 0.09 TCGA-HC-8257-01 13 42259307 42259307 G A VWA8 Silent p.F1401F 0.18 TCGA-HC-8257-01 13 50594457 50594457 G T KCNRG Missense_Mutation p.R229I 0.35 deleterious(0) possibly_damaging(0.813) TCGA-HC-8257-01 14 106090832 106090832 G C IGHG4 Missense_Mutation p.S322C 0.31 deleterious(0) probably_damaging(0.944) TCGA-HC-8257-01 14 21559179 21559179 G A ZNF219 Missense_Mutation p.P562L 0.41 deleterious(0.03) probably_damaging(0.992) TCGA-HC-8257-01 14 24795366 24795366 C T ADCY4 Missense_Mutation p.R525H 0.05 tolerated(0.19) possibly_damaging(0.837) TCGA-HC-8257-01 15 25221557 25221557 C A SNRPN Silent p.P87P 0.45 TCGA-HC-8257-01 16 2506639 2506639 C T CCNF Missense_Mutation p.P660L 0.10 tolerated_low_confidence(0.3) benign(0.002) TCGA-HC-8257-01 16 67159901 67159901 G T C16orf70 Missense_Mutation p.D63Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-HC-8257-01 16 67159903 67159903 C T C16orf70 Silent p.D63D 0.27 TCGA-HC-8257-01 16 68104843 68104843 C T DUS2 Silent p.N214N 0.30 TCGA-HC-8257-01 16 88747582 88747582 G A SNAI3 Missense_Mutation p.T206M 0.08 deleterious(0) probably_damaging(0.93) TCGA-HC-8257-01 17 3649106 3649106 G A ITGAE Silent p.S757S 0.44 TCGA-HC-8257-01 17 37369333 37369333 A T STAC2 Missense_Mutation p.V349E 0.04 deleterious(0) probably_damaging(0.999) TCGA-HC-8257-01 17 56274484 56274484 C T EPX Missense_Mutation p.T329I 0.36 deleterious(0) probably_damaging(0.948) TCGA-HC-8257-01 17 7340329 7340329 C T TMEM102 Missense_Mutation p.S344L 0.47 deleterious(0.04) possibly_damaging(0.824) TCGA-HC-8257-01 18 72343683 72343683 A T ZNF407 Missense_Mutation p.Q236H 0.28 tolerated(0.23) benign(0.009) TCGA-HC-8257-01 19 15471682 15471682 C T AKAP8 Missense_Mutation p.V502M 0.28 tolerated(0.29) benign(0.149) TCGA-HC-8257-01 19 43411267 43411267 G A PSG6 Silent p.L349L 0.15 TCGA-HC-8257-01 19 49207086 49207086 C T FUT2 Silent p.F291F 0.12 TCGA-HC-8257-01 19 49713988 49713988 C - TRPM4 Frame_Shift_Del p.E1118Sfs*5 0.26 TCGA-HC-8257-01 19 54872628 54872628 G A LAIR1 Missense_Mutation p.R87C 0.34 tolerated(0.18) possibly_damaging(0.568) TCGA-HC-8257-01 1 154542011 154542011 C - CHRNB2 Frame_Shift_Del p.R47Afs*10 0.26 TCGA-HC-8257-01 1 158988436 158988436 C T IFI16 Missense_Mutation p.H323Y 0.50 deleterious(0.01) possibly_damaging(0.454) TCGA-HC-8257-01 1 198719701 198719701 C T PTPRC Silent p.F1051F 0.12 TCGA-HC-8257-01 1 228452055 228452055 C T OBSCN Silent p.A1792A 0.09 TCGA-HC-8257-01 1 249118997 249118997 G T SH3BP5L Silent p.A46A 0.32 TCGA-HC-8257-01 1 26349783 26349783 C T EXTL1 Missense_Mutation p.R216W 0.15 tolerated(0.16) benign(0.058) TCGA-HC-8257-01 20 16409611 16409611 C T KIF16B Silent p.T487T 0.07 TCGA-HC-8257-01 20 49626294 49626294 G A KCNG1 Silent p.R194R 0.07 TCGA-HC-8257-01 22 50512646 50512646 G A MLC1 Missense_Mutation p.A238V 0.39 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-HC-8257-01 2 133489328 133489328 G A NCKAP5 Missense_Mutation p.P1809S 0.08 tolerated(0.08) probably_damaging(0.999) TCGA-HC-8257-01 2 179516426 179516426 C T TTN Missense_Mutation p.V13144I 0.39 TCGA-HC-8257-01 2 206562279 206562279 G A NRP2 Missense_Mutation p.G29R 0.31 deleterious(0) probably_damaging(0.997) TCGA-HC-8257-01 2 264886 264886 G A ACP1 5'UTR 0.27 TCGA-HC-8257-01 3 21606147 21606147 G T ZNF385D Missense_Mutation p.N65K 0.29 deleterious(0.02) probably_damaging(0.932) TCGA-HC-8257-01 3 56651182 56651182 G A CCDC66 Missense_Mutation p.C629Y 0.19 tolerated(0.12) benign(0.025) TCGA-HC-8257-01 4 89671667 89671667 G C FAM13A Silent p.L616L 0.37 TCGA-HC-8257-01 4 9982304 9982304 C T SLC2A9 Missense_Mutation p.R198H 0.08 deleterious(0) probably_damaging(0.994) TCGA-HC-8257-01 5 100231395 100231395 C G ST8SIA4 Missense_Mutation p.G70R 0.27 benign(0.003) TCGA-HC-8257-01 5 79028525 79028525 C T CMYA5 Missense_Mutation p.P1313S 0.25 benign(0.006) TCGA-HC-8257-01 5 82849251 82849251 C T VCAN Missense_Mutation p.R3188C 0.14 deleterious(0) probably_damaging(0.998) TCGA-HC-8257-01 6 33177793 33177793 G A RING1 Missense_Mutation p.R114Q 0.07 tolerated(0.05) benign(0.322) TCGA-HC-8257-01 7 100609803 100609803 A T MUC3A Splice_Site p.X815_splice 0.07 TCGA-HC-8257-01 7 111398815 111398816 TG C DOCK4 Frame_Shift_Del p.P1389Rfs*22 0.29 TCGA-HC-8257-01 8 11616016 11616016 G A GATA4 3'UTR 0.16 TCGA-HC-8257-01 8 121519023 121519023 A T MTBP Missense_Mutation p.D602V 0.25 deleterious(0) probably_damaging(0.979) TCGA-HC-8257-01 8 134026000 134026000 C T TG Missense_Mutation p.R2185W 0.18 deleterious(0) probably_damaging(0.947) TCGA-HC-8257-01 9 108397472 108397472 G A FKTN Missense_Mutation p.R438H 0.35 tolerated(0.07) benign(0.001) TCGA-HC-8257-01 9 114468873 114468873 C A C9orf84 Silent p.V840V 0.35 TCGA-HC-8257-01 X 118783981 118783981 G A SEPT6 Silent p.S203S 0.11 TCGA-HC-8257-01 X 40999970 40999970 A G USP9X Missense_Mutation p.D239G 0.14 tolerated(0.13) possibly_damaging(0.842) TCGA-HC-8258-01 10 101464346 101464346 G A ENTPD7 Missense_Mutation p.R574Q 0.10 deleterious(0.04) probably_damaging(0.987) TCGA-HC-8258-01 11 115047194 115047194 C A CADM1 Nonstop_Mutation p.*443Yext*15 0.09 TCGA-HC-8258-01 11 55432916 55432916 C G OR4C6 Missense_Mutation p.L92V 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.611) TCGA-HC-8258-01 11 60620871 60620871 A G PTGDR2 Missense_Mutation p.S109P 0.14 deleterious(0) probably_damaging(0.999) TCGA-HC-8258-01 12 57109936 57109936 G T NACA Missense_Mutation p.A640E 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-HC-8258-01 16 16349631 16349631 G A NOMO3 Missense_Mutation p.E340K 0.07 tolerated(0.7) benign(0.01) TCGA-HC-8258-01 17 16335412 16335412 C A TRPV2 Missense_Mutation p.A596D 0.05 deleterious(0.01) probably_damaging(0.909) TCGA-HC-8258-01 17 47696426 47696426 A G SPOP Missense_Mutation p.F133L 0.05 tolerated(0.07) probably_damaging(0.992) TCGA-HC-8258-01 1 108023313 108023313 G C NTNG1 Missense_Mutation p.A491P 0.07 deleterious(0.02) possibly_damaging(0.749) TCGA-HC-8258-01 1 108023314 108023314 C A NTNG1 Missense_Mutation p.A491E 0.07 tolerated(0.23) benign(0.022) TCGA-HC-8258-01 1 152285852 152285852 A G FLG Missense_Mutation p.S504P 0.04 probably_damaging(0.991) TCGA-HC-8258-01 1 201926447 201926447 C T TIMM17A Missense_Mutation p.T22M 0.07 tolerated(0.1) probably_damaging(0.999) TCGA-HC-8258-01 1 40960881 40960881 A C ZFP69 Missense_Mutation p.K244T 0.15 tolerated(0.1) benign(0.25) TCGA-HC-8258-01 20 18143271 18143271 G A CSRP2BP Silent p.K451K 0.15 TCGA-HC-8258-01 22 37449206 37449206 C T KCTD17 Missense_Mutation p.R93W 0.10 deleterious(0) probably_damaging(1) TCGA-HC-8258-01 2 112873692 112873692 A G TMEM87B Missense_Mutation p.K547R 0.19 deleterious(0.04) benign(0.012) TCGA-HC-8258-01 3 113378681 113378681 A T KIAA2018 Missense_Mutation p.N616K 0.12 benign(0.05) TCGA-HC-8258-01 3 50365424 50365424 C A TUSC2 Missense_Mutation p.R36L 0.22 deleterious(0.03) possibly_damaging(0.451) TCGA-HC-8258-01 4 144469277 144469277 A G SMARCA5 Missense_Mutation p.K990R 0.15 tolerated(0.24) benign(0.195) TCGA-HC-8258-01 4 3769634 3769634 C G ADRA2C Missense_Mutation p.P434R 0.06 deleterious(0) probably_damaging(0.999) TCGA-HC-8259-01 10 128192655 128192655 C T C10orf90 Missense_Mutation p.E372K 0.37 tolerated(0.34) benign(0.311) TCGA-HC-8259-01 10 135170738 135170738 G C FUOM Missense_Mutation p.P36R 0.19 deleterious(0.03) probably_damaging(0.944) TCGA-HC-8259-01 10 18823041 18823041 T A CACNB2 Missense_Mutation p.L364H 0.08 deleterious(0) probably_damaging(1) TCGA-HC-8259-01 10 97810164 97810164 G A CCNJ Missense_Mutation p.R74H 0.05 tolerated(0.32) benign(0.201) TCGA-HC-8259-01 11 113853983 113853983 G T HTR3A Silent p.S178S 0.07 TCGA-HC-8259-01 11 1586987 1586987 G A DUSP8 Missense_Mutation p.P24S 0.13 tolerated(0.37) benign(0.433) TCGA-HC-8259-01 11 34475464 34475464 C - CAT Frame_Shift_Del p.H235Ifs*50 0.14 TCGA-HC-8259-01 11 43436141 43436141 C G TTC17 Missense_Mutation p.P689R 0.10 deleterious(0) probably_damaging(1) TCGA-HC-8259-01 11 96117582 96117582 T C CCDC82 Silent p.E110E 0.09 TCGA-HC-8259-01 12 10224015 10224015 G A CLEC1A Missense_Mutation p.R254C 0.05 tolerated(0.15) benign(0.309) TCGA-HC-8259-01 12 133353557 133353557 A T GOLGA3 Missense_Mutation p.V1281E 0.07 deleterious(0.03) benign(0.017) TCGA-HC-8259-01 12 44166061 44166061 A T IRAK4 Missense_Mutation p.D129V 0.04 tolerated(0.15) benign(0.04) TCGA-HC-8259-01 12 7647956 7647956 G A CD163 Missense_Mutation p.R381C 0.09 deleterious(0) probably_damaging(0.982) TCGA-HC-8259-01 12 83251221 83251221 C G TMTC2 Missense_Mutation p.F172L 0.51 tolerated(1) benign(0.001) TCGA-HC-8259-01 14 31348049 31348049 G A COCH Missense_Mutation p.R91Q 0.06 tolerated(0.35) benign(0.35) TCGA-HC-8259-01 14 89307828 89307828 A G TTC8 Silent p.T183T 0.10 TCGA-HC-8259-01 15 20170341 20170341 C A IGHV1OR15-9 Missense_Mutation p.W5L 0.08 deleterious(0.03) probably_damaging(0.979) TCGA-HC-8259-01 15 24923472 24923472 A T NPAP1 Missense_Mutation p.I820F 0.39 tolerated(0.79) benign(0.002) TCGA-HC-8259-01 16 17294398 17294398 G A XYLT1 Nonsense_Mutation p.Q343* 0.07 TCGA-HC-8259-01 16 76573710 76573710 C T CNTNAP4 Silent p.H1032H 0.05 TCGA-HC-8259-01 16 89352043 89352043 C G ANKRD11 Missense_Mutation p.E303Q 0.08 benign(0.188) TCGA-HC-8259-01 17 27286418 27286418 C T SEZ6 Missense_Mutation p.R615H 0.05 deleterious(0.01) probably_damaging(0.91) TCGA-HC-8259-01 17 34945807 34945807 G A GGNBP2 Missense_Mutation p.C687Y 0.45 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-HC-8259-01 18 61570299 61570299 A T SERPINB2 Silent p.G336G 0.05 TCGA-HC-8259-01 18 72223614 72223614 C T CNDP1 Silent p.R22R 0.04 TCGA-HC-8259-01 18 8824836 8824836 G A SOGA2 Missense_Mutation p.E1110K 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-HC-8259-01 19 16872810 16872810 G A NWD1 Missense_Mutation p.R665H 0.38 deleterious(0.04) benign(0.031) TCGA-HC-8259-01 19 4409410 4409410 G A CHAF1A Missense_Mutation p.R205Q 0.52 tolerated(1) unknown(0) TCGA-HC-8259-01 19 6986412 6986412 A G EMR4P RNA 0.16 TCGA-HC-8259-01 1 159163349 159163349 C T CADM3 Silent p.H207H 0.08 TCGA-HC-8259-01 1 167367303 167367303 G A POU2F1 Missense_Mutation p.R401H 0.07 deleterious(0) unknown(0) TCGA-HC-8259-01 1 172579406 172579406 T C SUCO 3'UTR 0.11 TCGA-HC-8259-01 1 204216548 204216548 G T PLEKHA6 Missense_Mutation p.S622Y 0.33 tolerated(0.63) benign(0.011) TCGA-HC-8259-01 1 38272777 38272777 G A YRDC Missense_Mutation p.T167M 0.07 deleterious(0.01) probably_damaging(0.967) TCGA-HC-8259-01 20 62120459 62120459 G A EEF1A2 Missense_Mutation p.P359L 0.04 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-HC-8259-01 2 190554476 190554476 T G ANKAR Nonsense_Mutation p.Y275* 0.06 TCGA-HC-8259-01 2 228882388 228882388 G A SPHKAP Missense_Mutation p.A1061V 0.09 deleterious(0.01) possibly_damaging(0.716) TCGA-HC-8259-01 2 242039085 242039085 C - MTERFD2 Frame_Shift_Del p.T83Lfs*10 0.24 TCGA-HC-8259-01 2 27535939 27535939 C T MPV17 Silent p.Q36Q 0.07 TCGA-HC-8259-01 2 36982191 36982191 G A VIT Missense_Mutation p.V135I 0.10 tolerated(0.19) benign(0.075) TCGA-HC-8259-01 2 46739777 46739777 T A ATP6V1E2 Missense_Mutation p.E25V 0.08 deleterious(0.03) probably_damaging(0.954) TCGA-HC-8259-01 3 134968200 134968200 C T EPHB1 Missense_Mutation p.R905C 0.04 deleterious(0.02) possibly_damaging(0.816) TCGA-HC-8259-01 3 137483867 137483867 C T SOX14 Missense_Mutation p.R81C 0.08 deleterious(0) probably_damaging(1) TCGA-HC-8259-01 3 33216454 33216454 G A SUSD5 Silent p.G174G 0.05 TCGA-HC-8259-01 4 109668005 109668005 C A ETNPPL Missense_Mutation p.G362V 0.11 deleterious(0) probably_damaging(0.994) TCGA-HC-8259-01 4 72623867 72623867 T C GC Silent p.Q260Q 0.43 TCGA-HC-8259-01 4 79832021 79832021 G A BMP2K Missense_Mutation p.D774N 0.46 deleterious_low_confidence(0.03) unknown(0) TCGA-HC-8259-01 5 177548157 177548157 G A N4BP3 Missense_Mutation p.R304Q 0.19 deleterious(0.04) benign(0.005) TCGA-HC-8259-01 5 180486695 180486695 G T BTNL9 Missense_Mutation p.A481S 0.08 tolerated(0.15) benign(0.111) TCGA-HC-8259-01 5 191695 191695 T A LRRC14B Silent p.A14A 0.12 TCGA-HC-8259-01 5 33461117 33461117 G A TARS Missense_Mutation p.R487Q 0.08 deleterious(0) probably_damaging(0.988) TCGA-HC-8259-01 5 37379473 37379473 G T WDR70 Nonsense_Mutation p.E2* 0.07 TCGA-HC-8259-01 6 157527453 157527453 C T ARID1B Silent p.D1726D 0.04 TCGA-HC-8259-01 7 131832692 131832692 A T PLXNA4 Missense_Mutation p.S1611T 0.08 tolerated(0.13) benign(0.014) TCGA-HC-8259-01 7 138764410 138764410 G T ZC3HAV1 Missense_Mutation p.P426H 0.10 deleterious(0.01) possibly_damaging(0.615) TCGA-HC-8259-01 7 142723348 142723348 T C OR9A2 Missense_Mutation p.D291G 0.08 deleterious(0) possibly_damaging(0.721) TCGA-HC-8259-01 8 38146134 38146135 - T WHSC1L1 Frame_Shift_Ins p.H1124Qfs*23 0.07 TCGA-HC-8259-01 8 69046379 69046379 G A PREX2 Silent p.A1284A 0.06 TCGA-HC-8259-01 9 103092361 103092361 C T TEX10 Silent p.A447A 0.05 TCGA-HC-8259-01 X 107977561 107977561 C G IRS4 Missense_Mutation p.E672Q 0.16 deleterious_low_confidence(0.04) unknown(0) TCGA-HC-8259-01 X 154299916 154299916 C T BRCC3 Silent p.C38C 0.17 TCGA-HC-8260-01 10 15255016 15255016 G A FAM171A1 Silent p.H857H 0.08 TCGA-HC-8260-01 10 70332588 70332588 G C TET1 Missense_Mutation p.V165L 0.09 tolerated(0.11) benign(0.02) TCGA-HC-8260-01 10 82034334 82034334 G A MAT1A Nonsense_Mutation p.R343* 0.08 TCGA-HC-8260-01 11 108205765 108205765 G A ATM Missense_Mutation p.G2694R 0.19 deleterious(0) probably_damaging(1) TCGA-HC-8260-01 16 81965227 81965227 A G PLCG2 Missense_Mutation p.I903V 0.07 deleterious(0.03) benign(0.004) TCGA-HC-8260-01 16 87445898 87445898 C A ZCCHC14 Missense_Mutation p.R673L 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-HC-8260-01 17 2236286 2236286 T C TSR1 Missense_Mutation p.E425G 0.14 tolerated(0.12) benign(0.097) TCGA-HC-8260-01 17 42390845 42390845 G A RUNDC3A Silent p.T144T 0.08 TCGA-HC-8260-01 20 44236737 44236737 G A WFDC9 3'UTR 0.07 TCGA-HC-8260-01 2 163005635 163005635 G A GCG Silent p.S18S 0.10 TCGA-HC-8260-01 5 140263757 140263757 G A PCDHA13 Missense_Mutation p.R635H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.528) TCGA-HC-8260-01 7 127222427 127222427 C T GCC1 Missense_Mutation p.A657T 0.07 tolerated(0.07) probably_damaging(0.994) TCGA-HC-8260-01 9 43627235 43627235 T A SPATA31A6 Missense_Mutation p.Q484H 0.17 deleterious(0) probably_damaging(0.994) TCGA-HC-8261-01 10 105967581 105967581 G A WDR96 Missense_Mutation p.P246L 0.29 deleterious(0) possibly_damaging(0.884) TCGA-HC-8261-01 10 12133636 12133636 C T DHTKD1 Missense_Mutation p.T371I 0.05 deleterious(0) probably_damaging(0.996) TCGA-HC-8261-01 10 126370270 126370270 C G FAM53B Missense_Mutation p.C271S 0.30 deleterious(0) possibly_damaging(0.791) TCGA-HC-8261-01 11 59225028 59225028 A G OR4D6 Missense_Mutation p.M199V 0.07 tolerated(0.15) benign(0.243) TCGA-HC-8261-01 11 6652623 6652623 G C DCHS1 Missense_Mutation p.P1231A 0.11 tolerated(0.15) benign(0.044) TCGA-HC-8261-01 12 121434123 121434123 C T HNF1A Silent p.G338G 0.10 TCGA-HC-8261-01 12 56628745 56628745 T A SLC39A5 Silent p.P203P 0.30 TCGA-HC-8261-01 14 105618060 105618060 G A JAG2 Silent p.T352T 0.08 TCGA-HC-8261-01 14 21860705 21860705 T A CHD8 Silent p.R2244R 0.06 TCGA-HC-8261-01 14 35470176 35470176 C G SRP54 Missense_Mutation p.L69V 0.19 tolerated(0.78) benign(0.006) TCGA-HC-8261-01 14 38296498 38296498 C T TTC6 Missense_Mutation p.T1742I 0.39 deleterious(0.01) possibly_damaging(0.503) TCGA-HC-8261-01 14 90442141 90442141 C T TDP1 Missense_Mutation p.A258V 0.33 tolerated(0.17) benign(0.264) TCGA-HC-8261-01 14 93399080 93399080 C T CHGA Nonsense_Mutation p.R392* 0.33 TCGA-HC-8261-01 15 50790907 50790907 T C USP8 Silent p.Y1051Y 0.22 TCGA-HC-8261-01 16 22260091 22260091 C T EEF2K Silent p.T121T 0.10 TCGA-HC-8261-01 16 53243397 53243397 C A CHD9 Missense_Mutation p.P486T 0.25 possibly_damaging(0.676) TCGA-HC-8261-01 16 68712160 68712160 T C CDH3 Missense_Mutation p.F124L 0.26 deleterious(0.02) possibly_damaging(0.618) TCGA-HC-8261-01 17 15965015 15965015 T C NCOR1 Missense_Mutation p.S1861G 0.29 probably_damaging(0.958) TCGA-HC-8261-01 17 47696424 47696424 G C SPOP Missense_Mutation p.F133L 0.37 tolerated(0.07) probably_damaging(0.992) TCGA-HC-8261-01 19 53344590 53344590 C G ZNF468 Missense_Mutation p.R319S 0.64 deleterious(0.03) benign(0) TCGA-HC-8261-01 1 120436557 120436557 T G ADAM30 3'UTR 0.31 TCGA-HC-8261-01 1 23520453 23520453 A G HTR1D Missense_Mutation p.V87A 0.23 deleterious(0) probably_damaging(0.997) TCGA-HC-8261-01 21 17443441 17443441 T C LINC00478 RNA 0.24 TCGA-HC-8261-01 2 106497794 106497794 G A NCK2 Silent p.K79K 0.26 TCGA-HC-8261-01 2 219507893 219507893 C A ZNF142 Nonsense_Mutation p.E1116* 0.07 TCGA-HC-8261-01 3 179085842 179085842 G T MFN1 Missense_Mutation p.G309V 0.06 deleterious(0) probably_damaging(0.998) TCGA-HC-8261-01 4 109088959 109088959 G A LEF1 5'UTR 0.05 TCGA-HC-8261-01 4 109675832 109675832 T A ETNPPL Missense_Mutation p.I149F 0.33 deleterious(0) probably_damaging(0.981) TCGA-HC-8261-01 4 77677870 77677870 C T SHROOM3 Nonsense_Mutation p.Q1660* 0.07 TCGA-HC-8261-01 6 29797242 29797242 G A HLA-G Missense_Mutation p.A223T 0.04 tolerated_low_confidence(0.05) benign(0.11) TCGA-HC-8261-01 7 72683335 72683335 C T GTF2IRD2P1 RNA 0.29 TCGA-HC-8261-01 8 3047474 3047474 G A CSMD1 Silent p.N1786N 0.44 TCGA-HC-8261-01 9 96320951 96320951 C T FAM120A Silent p.C919C 0.30 TCGA-HC-8261-01 X 71351091 71351091 C T RGAG4 Silent p.S100S 0.59 TCGA-HC-8262-01 10 88702336 88702336 G A MMRN2 Silent p.N735N 0.08 TCGA-HC-8262-01 11 118047178 118047178 T A SCN2B 5'UTR 0.15 TCGA-HC-8262-01 11 56258763 56258763 C T OR5M8 Silent p.T28T 0.27 TCGA-HC-8262-01 11 6650985 6650985 C T DCHS1 Silent p.Q1651Q 0.45 TCGA-HC-8262-01 11 77734212 77734212 C A KCTD14 Silent p.R28R 0.09 TCGA-HC-8262-01 12 56231626 56231629 CCCT - MMP19 Splice_Site p.X353_splice 0.19 TCGA-HC-8262-01 12 8800751 8800751 C T MFAP5 Missense_Mutation p.R153H 0.23 deleterious(0) probably_damaging(0.999) TCGA-HC-8262-01 14 51489667 51489667 A C TRIM9 Missense_Mutation p.S309R 0.20 tolerated(0.07) benign(0.027) TCGA-HC-8262-01 15 83932046 83932046 C G BNC1 Missense_Mutation p.G653R 0.27 tolerated(0.49) benign(0.282) TCGA-HC-8262-01 16 23444927 23444927 A G COG7 Missense_Mutation p.L250P 0.19 deleterious(0) probably_damaging(0.988) TCGA-HC-8262-01 17 3979978 3979978 C A ZZEF1 Nonsense_Mutation p.E1063* 0.32 TCGA-HC-8262-01 17 45286729 45286729 C T MYL4 Intron 0.19 TCGA-HC-8262-01 17 7140001 7140001 G A PHF23 Missense_Mutation p.S82L 0.18 deleterious(0) possibly_damaging(0.879) TCGA-HC-8262-01 18 12325161 12325161 G A TUBB6 Missense_Mutation p.E125K 0.23 deleterious_low_confidence(0.02) probably_damaging(0.966) TCGA-HC-8262-01 18 74592173 74592173 C A ZNF236 Silent p.L361L 0.23 TCGA-HC-8262-01 1 10709155 10709155 T G CASZ1 Missense_Mutation p.T1044P 0.14 deleterious(0) probably_damaging(0.981) TCGA-HC-8262-01 1 144930736 144930736 C T PDE4DIP Intron 0.06 TCGA-HC-8262-01 1 158063224 158063224 C T KIRREL Missense_Mutation p.R523C 0.25 tolerated(0.06) probably_damaging(0.912) TCGA-HC-8262-01 1 158390650 158390650 G A OR10K2 Missense_Mutation p.R3W 0.08 tolerated(0.21) benign(0.002) TCGA-HC-8262-01 1 160851965 160851965 C T ITLN1 Missense_Mutation p.G63S 0.31 tolerated(0.09) possibly_damaging(0.559) TCGA-HC-8262-01 1 204513776 204513776 A C MDM4 Missense_Mutation p.Q262H 0.31 tolerated(0.12) benign(0.001) TCGA-HC-8262-01 1 215963438 215963438 A T USH2A Missense_Mutation p.V3382D 0.21 probably_damaging(0.997) TCGA-HC-8262-01 1 3342257 3342257 G A PRDM16 Missense_Mutation p.G1018R 0.18 deleterious(0.04) possibly_damaging(0.573) TCGA-HC-8262-01 20 50419033 50419033 C A SALL4 5'UTR 0.22 TCGA-HC-8262-01 20 62321319 62321320 - G RTEL1 Intron 0.20 TCGA-HC-8262-01 22 25627721 25627721 C T CRYBB2 Silent p.A200A 0.27 TCGA-HC-8262-01 2 114714958 114714958 C G ACTR3 Missense_Mutation p.H395D 0.10 deleterious(0.02) probably_damaging(0.972) TCGA-HC-8262-01 2 189876547 189876547 G A COL3A1 3'UTR 0.23 TCGA-HC-8262-01 2 7160686 7160686 G A RNF144A Silent p.Q128Q 0.16 TCGA-HC-8262-01 3 122447397 122447397 T G PARP14 Missense_Mutation p.Y1787D 0.28 tolerated(0.73) probably_damaging(0.993) TCGA-HC-8262-01 3 15721039 15721039 T G ANKRD28 Missense_Mutation p.E777D 0.18 tolerated(0.16) benign(0.375) TCGA-HC-8262-01 3 194169231 194169231 G A ATP13A3 Missense_Mutation p.R369C 0.12 deleterious(0) probably_damaging(0.999) TCGA-HC-8262-01 3 41266097 41266097 G T CTNNB1 Missense_Mutation p.D32Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-HC-8262-01 3 46747349 46747349 C T TMIE Missense_Mutation p.R55C 0.25 deleterious(0) probably_damaging(0.997) TCGA-HC-8262-01 4 138442613 138442613 T A PCDH18 Missense_Mutation p.D993V 0.25 deleterious(0.02) benign(0.024) TCGA-HC-8262-01 5 14711384 14711384 C T ANKH Silent p.G467G 0.24 TCGA-HC-8262-01 6 107390917 107390917 G A BEND3 Missense_Mutation p.P493L 0.39 tolerated(0.4) benign(0.001) TCGA-HC-8262-01 7 141352779 141352779 A G AGK 3'UTR 0.11 TCGA-HC-8262-01 7 82579685 82579685 C T PCLO Missense_Mutation p.E3407K 0.15 unknown(0) TCGA-HC-8262-01 8 17611561 17611561 G A MTUS1 Nonsense_Mutation p.Q586* 0.06 TCGA-HC-8262-01 9 117071687 117071687 C T COL27A1 Missense_Mutation p.R1789W 0.18 unknown(0) TCGA-HC-8262-01 9 130438178 130438178 T C STXBP1 Silent p.Y402Y 0.09 TCGA-HC-8262-01 9 135517391 135517391 C A DDX31 Silent p.T585T 0.17 TCGA-HC-8262-01 9 140070252 140070252 A G ANAPC2 Missense_Mutation p.L643P 0.14 tolerated(0.12) possibly_damaging(0.905) TCGA-HC-8262-01 9 99581089 99581089 T A ZNF782 Nonsense_Mutation p.K406* 0.05 TCGA-HC-8264-01 10 103988611 103988611 C T ELOVL3 Missense_Mutation p.R139W 0.27 deleterious(0) benign(0.22) TCGA-HC-8264-01 10 124755532 124755532 A C IKZF5 Missense_Mutation p.I98M 0.07 tolerated(0.31) possibly_damaging(0.529) TCGA-HC-8264-01 10 135038480 135038480 G A KNDC1 3'UTR 0.36 TCGA-HC-8264-01 10 76602563 76602563 A G KAT6B 5'UTR 0.46 TCGA-HC-8264-01 11 106558307 106558307 C T GUCY1A2 Missense_Mutation p.G754S 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-HC-8264-01 11 117241960 117241960 T C CEP164 Silent p.L310L 0.35 TCGA-HC-8264-01 11 122929413 122929413 A C HSPA8 Missense_Mutation p.N483K 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HC-8264-01 11 46772926 46772926 T C CKAP5 Silent p.L1764L 0.33 TCGA-HC-8264-01 11 66326857 66326859 AGT - CTSF 3'Flank 0.27 TCGA-HC-8264-01 11 77937837 77937837 G T GAB2 Missense_Mutation p.T294N 0.09 deleterious(0.04) possibly_damaging(0.797) TCGA-HC-8264-01 12 113758894 113758894 A T SLC8B1 Missense_Mutation p.L110Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-HC-8264-01 13 84455386 84455386 C G SLITRK1 Missense_Mutation p.S86T 0.38 tolerated(1) benign(0.298) TCGA-HC-8264-01 14 39605772 39605773 AC - GEMIN2 3'UTR 0.41 TCGA-HC-8264-01 15 75816566 75816566 C T PTPN9 Missense_Mutation p.G94E 0.07 tolerated(0.14) probably_damaging(1) TCGA-HC-8264-01 16 630970 630970 C T PIGQ Missense_Mutation p.A510V 0.29 deleterious(0.01) possibly_damaging(0.797) TCGA-HC-8264-01 16 87451066 87451066 C G ZCCHC14 Missense_Mutation p.K324N 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-HC-8264-01 17 26818588 26818588 G A SLC13A2 Silent p.T285T 0.42 TCGA-HC-8264-01 17 42226166 42226166 C G C17orf53 Missense_Mutation p.S332C 0.33 tolerated(0.07) benign(0.075) TCGA-HC-8264-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.04 deleterious(0) probably_damaging(1) TCGA-HC-8264-01 18 21501019 21501019 G T LAMA3 Splice_Site p.X2681_splice 0.35 TCGA-HC-8264-01 19 42192031 42192031 C T CEACAM7 Missense_Mutation p.A22T 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-HC-8264-01 19 55995366 55995366 G A ZNF628 Missense_Mutation p.V936M 0.26 deleterious(0) unknown(0) TCGA-HC-8264-01 19 6495508 6495508 C G TUBB4A Missense_Mutation p.Q334H 0.34 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-HC-8264-01 1 120438879 120438879 G A ADAM30 Silent p.G27G 0.32 TCGA-HC-8264-01 1 154744824 154744824 T C KCNN3 Missense_Mutation p.T359A 0.27 deleterious(0.03) benign(0.024) TCGA-HC-8264-01 1 156213092 156213092 A G PMF1-BGLAP 3'Flank 0.30 TCGA-HC-8264-01 1 178514844 178514844 C T C1ORF220 Missense_Mutation p.A77V 0.08 possibly_damaging(0.682) TCGA-HC-8264-01 1 245850131 245850131 G A KIF26B Silent p.L1282L 0.27 TCGA-HC-8264-01 1 29519876 29519876 T C MECR 3'Flank 0.30 TCGA-HC-8264-01 1 45225999 45225999 C T KIF2C Missense_Mutation p.A472V 0.29 deleterious(0) probably_damaging(1) TCGA-HC-8264-01 20 31421540 31421540 T - MAPRE1 Frame_Shift_Del p.F47Lfs*12 0.26 TCGA-HC-8264-01 21 31066220 31066220 C T GRIK1 Missense_Mutation p.R94Q 0.29 tolerated(0.15) possibly_damaging(0.71) TCGA-HC-8264-01 21 35237515 35237515 C T ITSN1 Silent p.D1317D 0.19 TCGA-HC-8264-01 2 160035657 160035657 C G TANC1 Silent p.A831A 0.37 TCGA-HC-8264-01 2 175431712 175431712 C A WIPF1 Intron 0.50 TCGA-HC-8264-01 3 11744471 11744471 G T VGLL4 Missense_Mutation p.S13Y 0.14 deleterious(0.02) benign(0.351) TCGA-HC-8264-01 3 134967232 134967232 G T EPHB1 Missense_Mutation p.M857I 0.34 deleterious(0) probably_damaging(0.975) TCGA-HC-8264-01 3 1418725 1418725 G A CNTN6 Missense_Mutation p.G711E 0.27 deleterious(0) probably_damaging(1) TCGA-HC-8264-01 3 35763246 35763246 C T ARPP21 Missense_Mutation p.A348V 0.16 deleterious(0) possibly_damaging(0.776) TCGA-HC-8264-01 3 9799263 9799263 G A CAMK1 Missense_Mutation p.P358L 0.06 deleterious_low_confidence(0) benign(0.005) TCGA-HC-8264-01 4 155241971 155241971 G A DCHS2 Missense_Mutation p.T1072I 0.33 deleterious(0) probably_damaging(0.995) TCGA-HC-8264-01 4 69536088 69536088 T A UGT2B15 Missense_Mutation p.K83N 0.28 tolerated(0.05) possibly_damaging(0.566) TCGA-HC-8264-01 5 74325284 74325284 C T GCNT4 Silent p.E193E 0.25 TCGA-HC-8264-01 6 132910431 132910431 C T TAAR5 Missense_Mutation p.R132H 0.24 deleterious(0.04) benign(0.126) TCGA-HC-8264-01 6 159654482 159654482 C T FNDC1 Missense_Mutation p.R980C 0.28 deleterious_low_confidence(0) unknown(0) TCGA-HC-8264-01 6 30620732 30620732 C T C6orf136 3'UTR 0.43 TCGA-HC-8264-01 8 143614732 143614732 G A BAI1 Missense_Mutation p.D1159N 0.24 deleterious(0.01) possibly_damaging(0.831) TCGA-HC-8264-01 X 148037365 148037365 G A AFF2 Missense_Mutation p.R597H 0.71 deleterious(0) probably_damaging(0.998) TCGA-HC-8264-01 X 153222853 153222853 G A HCFC1 Silent p.S755S 0.69 TCGA-HC-8264-01 X 31986568 31986568 C G DMD Missense_Mutation p.E2168Q 0.30 possibly_damaging(0.607) TCGA-HC-8264-01 X 73740921 73740921 C T SLC16A2 Missense_Mutation p.A176V 0.61 tolerated(0.66) benign(0.089) TCGA-HC-8265-01 10 55566503 55566503 G T PCDH15 Missense_Mutation p.P1628T 0.31 tolerated_low_confidence(0.33) benign(0.012) TCGA-HC-8265-01 10 74034783 74034783 T A DDIT4 Missense_Mutation p.L179Q 0.17 deleterious(0) probably_damaging(1) TCGA-HC-8265-01 10 79571786 79571786 C T DLG5 Silent p.T1406T 0.05 TCGA-HC-8265-01 11 103907873 103907873 G A DDI1 Missense_Mutation p.R108H 0.31 tolerated(0.07) benign(0.28) TCGA-HC-8265-01 11 10647847 10647847 G A MRVI1 Missense_Mutation p.P345L 0.41 tolerated(0.12) benign(0.006) TCGA-HC-8265-01 12 2764406 2764406 T G CACNA1C Splice_Site p.X1459_splice 0.12 TCGA-HC-8265-01 12 43896163 43896163 T C ADAMTS20 Missense_Mutation p.N220S 0.08 tolerated(1) benign(0.013) TCGA-HC-8265-01 12 49729849 49729849 C T C1QL4 Missense_Mutation p.A138T 0.37 deleterious(0.01) benign(0.227) TCGA-HC-8265-01 13 49281344 49281344 G C CYSLTR2 Missense_Mutation p.V131L 0.24 tolerated(0.06) benign(0.407) TCGA-HC-8265-01 14 23887594 23887594 C T MYH7 Missense_Mutation p.A1332T 0.10 deleterious(0.01) possibly_damaging(0.666) TCGA-HC-8265-01 14 38061243 38061243 T A FOXA1 Missense_Mutation p.D249V 0.40 deleterious(0) probably_damaging(0.976) TCGA-HC-8265-01 14 52957171 52957171 T C TXNDC16 Splice_Site p.X308_splice 0.08 TCGA-HC-8265-01 14 64532245 64532245 C G SYNE2 Silent p.G3436G 0.08 TCGA-HC-8265-01 15 45003696 45003696 A T B2M 5'UTR 0.11 TCGA-HC-8265-01 16 2089886 2089886 G T NTHL1 3'UTR 0.32 TCGA-HC-8265-01 16 85111074 85111074 G A KIAA0513 Silent p.A206A 0.29 TCGA-HC-8265-01 17 37618486 37618501 GTTGGTGACCCCCGAA - CDK12 Frame_Shift_Del p.L55Qfs*32 0.16 TCGA-HC-8265-01 17 37627877 37627877 C T CDK12 Nonsense_Mutation p.Q598* 0.29 TCGA-HC-8265-01 17 39595598 39595598 G A KRT38 Missense_Mutation p.R197C 0.07 deleterious(0.02) benign(0.011) TCGA-HC-8265-01 17 40477031 40477031 T C STAT3 Missense_Mutation p.N472D 0.03 deleterious(0.01) possibly_damaging(0.739) TCGA-HC-8265-01 17 48741453 48741453 C T ABCC3 Missense_Mutation p.A440V 0.05 deleterious(0) probably_damaging(0.916) TCGA-HC-8265-01 17 7229026 7229026 C T NEURL4 Missense_Mutation p.D434N 0.19 deleterious(0.01) probably_damaging(0.972) TCGA-HC-8265-01 17 7495936 7495936 C A MPDU1 3'Flank 0.31 TCGA-HC-8265-01 18 21098913 21098913 G T C18orf8 Missense_Mutation p.G238V 0.22 deleterious(0) possibly_damaging(0.858) TCGA-HC-8265-01 19 13010567 13010567 A G GCDH 3'UTR 0.24 TCGA-HC-8265-01 19 35786682 35786682 G A MAG Silent p.P71P 0.05 TCGA-HC-8265-01 19 40411866 40411866 C T FCGBP Silent p.A1254A 0.22 TCGA-HC-8265-01 19 58213660 58213660 A G ZNF154 Silent p.C219C 0.31 TCGA-HC-8265-01 1 196274364 196274364 C A KCNT2 Missense_Mutation p.K865N 0.08 deleterious(0.01) benign(0.285) TCGA-HC-8265-01 1 228444583 228444583 G A OBSCN Missense_Mutation p.C1606Y 0.28 probably_damaging(0.997) TCGA-HC-8265-01 20 42265850 42265850 G A IFT52 Silent p.T359T 0.29 TCGA-HC-8265-01 2 131976139 131976139 A C POTEE Missense_Mutation p.K55T 0.04 deleterious_low_confidence(0) benign(0.403) TCGA-HC-8265-01 2 179397722 179397722 A T TTN Nonsense_Mutation p.Y34540* 0.20 TCGA-HC-8265-01 2 179530153 179530153 C A TTN Missense_Mutation p.M11998I 0.11 TCGA-HC-8265-01 2 191862718 191862718 T G STAT1 Missense_Mutation p.I217L 0.36 tolerated(1) benign(0.012) TCGA-HC-8265-01 2 211336687 211336687 C T LANCL1 Nonsense_Mutation p.W65* 0.21 TCGA-HC-8265-01 2 218712884 218712884 G A TNS1 Missense_Mutation p.R661C 0.33 tolerated(0.24) benign(0.002) TCGA-HC-8265-01 2 234591302 234591302 C T UGT1A7 Missense_Mutation p.T240M 0.05 deleterious(0) probably_damaging(0.958) TCGA-HC-8265-01 2 241814527 241814527 A C AGXT Missense_Mutation p.K228Q 0.29 tolerated(0.33) benign(0) TCGA-HC-8265-01 3 159710861 159710861 A G IL12A Silent p.T109T 0.05 TCGA-HC-8265-01 3 193332788 193332788 C T OPA1 Silent p.L103L 0.06 TCGA-HC-8265-01 3 25654130 25654130 C - TOP2B Frame_Shift_Del p.G1216Afs*5 0.18 TCGA-HC-8265-01 4 121958241 121958241 G T NDNF Missense_Mutation p.N295K 0.05 tolerated(0.06) benign(0.328) TCGA-HC-8265-01 4 23815648 23815648 G A PPARGC1A Silent p.D486D 0.24 TCGA-HC-8265-01 4 46043172 46043172 C A GABRG1 Missense_Mutation p.D411Y 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-HC-8265-01 5 115813744 115813744 G - SEMA6A Frame_Shift_Del p.G513Afs*24 0.19 TCGA-HC-8265-01 5 118507503 118507504 - T DMXL1 Frame_Shift_Ins p.S2175Vfs*28 0.23 TCGA-HC-8265-01 5 137519025 137519025 G T KIF20A Missense_Mutation p.D334Y 0.21 deleterious(0) probably_damaging(1) TCGA-HC-8265-01 5 179565029 179565029 G A RASGEF1C Silent p.S8S 0.04 TCGA-HC-8265-01 5 55204129 55204129 T C IL31RA Missense_Mutation p.I464T 0.09 deleterious(0.01) probably_damaging(0.964) TCGA-HC-8265-01 5 72866487 72866502 AGTGGAGAGTGTCCTA - UTP15 Frame_Shift_Del p.V209Ffs*22 0.10 TCGA-HC-8265-01 6 132909802 132909802 G C TAAR5 3'UTR 0.09 TCGA-HC-8265-01 6 13321294 13321294 T C TBC1D7 Missense_Mutation p.K76R 0.06 tolerated(0.2) benign(0) TCGA-HC-8265-01 6 155131226 155131226 C G SCAF8 Nonsense_Mutation p.S435* 0.08 TCGA-HC-8265-01 6 29142063 29142063 T A OR2J2 Silent p.T217T 0.14 TCGA-HC-8265-01 6 46660093 46660093 A T TDRD6 Missense_Mutation p.I1410L 0.31 tolerated(0.79) benign(0.001) TCGA-HC-8265-01 6 46991864 46991864 A G GPR110 Missense_Mutation p.Y123H 0.38 tolerated(0.48) benign(0.004) TCGA-HC-8265-01 6 7575021 7575021 G A DSP Missense_Mutation p.G810E 0.21 benign(0.215) TCGA-HC-8265-01 6 90363906 90363906 T C MDN1 Missense_Mutation p.K5213R 0.29 unknown(0) TCGA-HC-8265-01 7 100464198 100464198 G A SLC12A9 Missense_Mutation p.V906I 0.20 tolerated(0.28) benign(0.001) TCGA-HC-8265-01 7 148921395 148921395 C T ZNF282 Missense_Mutation p.H558Y 0.16 deleterious(0.04) benign(0.324) TCGA-HC-8265-01 7 150500789 150500789 T C TMEM176A Missense_Mutation p.Y142H 0.06 tolerated(0.39) benign(0.001) TCGA-HC-8265-01 7 17885263 17885263 G A SNX13 Silent p.L374L 0.22 TCGA-HC-8265-01 7 82545752 82545752 C T PCLO Silent p.Q3850Q 0.04 TCGA-HC-8265-01 8 141525311 141525311 G C CHRAC1 Missense_Mutation p.D121H 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-HC-8265-01 8 22105704 22105704 A G POLR3D Silent p.G133G 0.19 TCGA-HC-8265-01 8 54900745 54900745 C T TCEA1 Missense_Mutation p.R132Q 0.24 tolerated(0.48) benign(0.01) TCGA-HC-8265-01 8 75276269 75276269 C T GDAP1 Silent p.D248D 0.09 TCGA-HC-8265-01 9 120466693 120466693 C A TLR4 5'UTR 0.19 TCGA-HC-8265-01 9 127637421 127637421 G C ARPC5L Missense_Mutation p.W130C 0.12 deleterious(0) probably_damaging(1) TCGA-HC-8265-01 9 20414337 20414337 G A MLLT3 Silent p.S169S 0.07 TCGA-HC-8265-01 9 75445550 75445550 G C TMC1 Missense_Mutation p.A738P 0.24 deleterious(0.02) possibly_damaging(0.451) TCGA-HC-8265-01 9 75445552 75445552 T G TMC1 Silent p.A738A 0.28 TCGA-HC-8265-01 X 134948025 134948025 G T CT45A5 Missense_Mutation p.S100R 0.59 tolerated(0.33) benign(0.116) TCGA-HC-8265-01 X 140969484 140969484 C - MAGEC3 Frame_Shift_Del p.Q272Rfs*5 0.40 TCGA-HC-8265-01 X 54481902 54481902 C T FGD1 Missense_Mutation p.R665H 0.24 deleterious(0) possibly_damaging(0.739) TCGA-HC-8265-01 X 91132587 91132587 G A PCDH11X Missense_Mutation p.A450T 0.54 tolerated(0.56) benign(0.057) TCGA-HC-8266-01 10 25888046 25888046 C T GPR158 Missense_Mutation p.P1164L 0.10 tolerated(0.07) benign(0.013) TCGA-HC-8266-01 10 26462763 26462763 A G MYO3A Silent p.K1190K 0.17 TCGA-HC-8266-01 11 116729075 116729075 G A SIK3 Missense_Mutation p.P930S 0.07 deleterious_low_confidence(0) benign(0.035) TCGA-HC-8266-01 11 14808089 14808089 C T PDE3B Missense_Mutation p.S379F 0.17 deleterious(0) probably_damaging(0.928) TCGA-HC-8266-01 11 19914062 19914062 C T NAV2 Missense_Mutation p.R308C 0.18 deleterious(0) probably_damaging(0.996) TCGA-HC-8266-01 11 65375265 65375265 G A MAP3K11 Silent p.H364H 0.16 TCGA-HC-8266-01 11 85725995 85725995 A G PICALM Missense_Mutation p.V155A 0.18 deleterious(0) possibly_damaging(0.479) TCGA-HC-8266-01 12 13828770 13828770 T A GRIN2B Missense_Mutation p.E345V 0.10 deleterious(0) probably_damaging(0.983) TCGA-HC-8266-01 14 24839274 24839274 C A NFATC4 Missense_Mutation p.P287T 0.14 tolerated(0.33) possibly_damaging(0.848) TCGA-HC-8266-01 16 53504028 53504028 A G RBL2 Missense_Mutation p.T726A 0.20 deleterious(0.04) benign(0.17) TCGA-HC-8266-01 17 40117357 40117357 A G CNP 5'Flank 0.14 TCGA-HC-8266-01 17 73495421 73495421 T C KIAA0195 3'UTR 0.15 TCGA-HC-8266-01 1 153788813 153788813 G C GATAD2B Silent p.A384A 0.08 TCGA-HC-8266-01 1 247588840 247588840 C T NLRP3 Nonsense_Mutation p.R699* 0.10 TCGA-HC-8266-01 1 60299077 60299077 T - HOOK1 Frame_Shift_Del p.L93Wfs*13 0.09 TCGA-HC-8266-01 1 75609601 75609601 G T LHX8 Missense_Mutation p.A228S 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-HC-8266-01 1 94054855 94054855 C T BCAR3 Missense_Mutation p.R203Q 0.09 tolerated(0.05) benign(0.015) TCGA-HC-8266-01 21 31914086 31914086 A T KRTAP19-6 Missense_Mutation p.Y23N 0.06 tolerated_low_confidence(0.1) unknown(0) TCGA-HC-8266-01 3 113753974 113753974 G A KIAA1407 Missense_Mutation p.R206C 0.13 deleterious(0) probably_damaging(1) TCGA-HC-8266-01 4 42072553 42072553 G A SLC30A9 Silent p.L421L 0.17 TCGA-HC-8266-01 4 84026088 84026088 G A PLAC8 Silent p.V68V 0.07 TCGA-HC-8266-01 5 140476458 140476458 C T PCDHB2 Missense_Mutation p.A695V 0.09 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-HC-8266-01 6 125233353 125233353 T A RP11-510H23.1 RNA 0.18 TCGA-HC-8266-01 6 152522967 152522967 G A SYNE1 Missense_Mutation p.R7713C 0.06 benign(0.003) TCGA-HC-8266-01 7 156755744 156755744 T C NOM1 Missense_Mutation p.S596P 0.13 deleterious(0) benign(0.222) TCGA-HC-8266-01 7 72891714 72891714 G A BAZ1B Missense_Mutation p.R693W 0.14 deleterious(0) probably_damaging(0.999) TCGA-HC-8266-01 8 28206326 28206326 C T ZNF395 Silent p.K484K 0.14 TCGA-HC-8266-01 9 112185091 112185091 A C PTPN3 Missense_Mutation p.M348R 0.12 tolerated(0.05) possibly_damaging(0.757) TCGA-HC-8266-01 9 136260870 136260870 C G C9orf96 Silent p.P282P 0.26 TCGA-HC-8266-01 9 99296346 99296346 G C CDC14B Missense_Mutation p.A270G 0.10 tolerated(0.06) possibly_damaging(0.9) TCGA-HC-8266-01 Y 15023762 15023762 A G DDX3Y Missense_Mutation p.K55E 0.11 tolerated(0.62) benign(0.066) TCGA-HC-A48F-01 10 101473137 101473138 - A COX15 3'Flank 0.34 TCGA-HC-A48F-01 11 114113039 114113039 G A ZBTB16 Missense_Mutation p.R535H 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A48F-01 12 133226399 133226399 A G POLE Missense_Mutation p.L1220P 0.12 tolerated(0.3) benign(0) TCGA-HC-A48F-01 12 4874639 4874639 C T GALNT8 Missense_Mutation p.A563V 0.75 deleterious(0.01) possibly_damaging(0.499) TCGA-HC-A48F-01 15 85403130 85403130 T G ALPK3 Silent p.P1565P 0.44 TCGA-HC-A48F-01 17 7578509 7578509 A C TP53 Missense_Mutation p.C141G 0.54 deleterious(0.01) probably_damaging(1) TCGA-HC-A48F-01 19 16222572 16222572 C T RAB8A 5'UTR 0.46 TCGA-HC-A48F-01 19 50214114 50214114 G A CPT1C Silent p.T622T 0.40 TCGA-HC-A48F-01 1 11210249 11210249 T C MTOR Missense_Mutation p.T1502A 0.19 tolerated(0.83) benign(0) TCGA-HC-A48F-01 1 11736124 11736124 C T MAD2L2 Missense_Mutation p.V136I 0.19 tolerated(0.48) benign(0.003) TCGA-HC-A48F-01 1 119427320 119427320 G A TBX15 3'UTR 0.52 TCGA-HC-A48F-01 1 70877212 70877213 - C CTH Frame_Shift_Ins p.I41Hfs*19 0.32 TCGA-HC-A48F-01 1 82417719 82417719 G A LPHN2 Missense_Mutation p.V559I 0.42 tolerated(0.54) benign(0.026) TCGA-HC-A48F-01 1 90401265 90401265 G T LRRC8D 3'UTR 0.26 TCGA-HC-A48F-01 20 35261966 35261966 G A SLA2 Silent p.H86H 0.44 TCGA-HC-A48F-01 20 60485631 60485631 G A CDH4 Missense_Mutation p.V448I 0.35 tolerated(0.39) benign(0.001) TCGA-HC-A48F-01 22 21173958 21173958 T C PI4KA Missense_Mutation p.K254E 0.48 tolerated(0.51) benign(0.045) TCGA-HC-A48F-01 22 36123054 36123054 C T APOL5 Silent p.S313S 0.35 TCGA-HC-A48F-01 2 1926643 1926643 C T MYT1L Missense_Mutation p.V300I 0.13 tolerated_low_confidence(0.49) benign(0.08) TCGA-HC-A48F-01 3 15106611 15106611 T C MRPS25 Missense_Mutation p.T31A 0.35 tolerated(0.18) possibly_damaging(0.556) TCGA-HC-A48F-01 3 166960306 166960306 C A ZBBX Missense_Mutation p.V794F 0.39 tolerated(0.12) benign(0.103) TCGA-HC-A48F-01 3 170805169 170805169 C T TNIK Missense_Mutation p.V950I 0.42 tolerated(0.73) benign(0.024) TCGA-HC-A48F-01 4 156784879 156784879 A C ASIC5 Missense_Mutation p.L23R 0.43 deleterious(0) benign(0.17) TCGA-HC-A48F-01 5 121188192 121188192 C T FTMT Silent p.H178H 0.73 TCGA-HC-A48F-01 5 32089965 32089965 A G PDZD2 Silent p.A2137A 0.39 TCGA-HC-A48F-01 6 146264543 146264543 G A SHPRH Silent p.R658R 0.38 TCGA-HC-A48F-01 7 143095499 143095499 G C EPHA1 Missense_Mutation p.P460R 0.17 tolerated(0.72) probably_damaging(0.973) TCGA-HC-A48F-01 7 150439591 150439591 C T GIMAP5 Missense_Mutation p.R122C 0.48 deleterious(0.04) possibly_damaging(0.726) TCGA-HC-A48F-01 8 30436473 30436473 G A GTF2E2 Silent p.L281L 0.83 TCGA-HC-A48F-01 9 32632097 32632097 C T TAF1L Missense_Mutation p.G1161R 0.10 tolerated(0.16) benign(0.273) TCGA-HC-A4ZV-01 10 123842618 123842618 G A TACC2 Silent p.S201S 0.38 TCGA-HC-A4ZV-01 10 26500819 26500819 C G MYO3A Missense_Mutation p.A1593G 0.31 tolerated_low_confidence(0.42) benign(0.007) TCGA-HC-A4ZV-01 10 29710360 29710360 C T PTCHD3P1 RNA 0.26 TCGA-HC-A4ZV-01 10 70673953 70673953 C A DDX50 Missense_Mutation p.T361N 0.46 tolerated(0.06) benign(0.142) TCGA-HC-A4ZV-01 11 108214036 108214036 G A ATM Missense_Mutation p.G2786S 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-HC-A4ZV-01 11 1266912 1266912 G T MUC5B Silent p.V2934V 0.32 TCGA-HC-A4ZV-01 11 134120183 134120183 C T THYN1 Missense_Mutation p.V93I 0.22 tolerated(0.17) probably_damaging(0.964) TCGA-HC-A4ZV-01 11 26681858 26681858 T C ANO3 Missense_Mutation p.V938A 0.35 deleterious(0.03) possibly_damaging(0.507) TCGA-HC-A4ZV-01 11 46897058 46897058 T G LRP4 Missense_Mutation p.N1292H 0.31 deleterious(0.02) possibly_damaging(0.854) TCGA-HC-A4ZV-01 11 57100120 57100120 G T SSRP1 Missense_Mutation p.D249E 0.37 deleterious(0) probably_damaging(1) TCGA-HC-A4ZV-01 11 61067568 61067568 G C DDB1 3'UTR 0.38 TCGA-HC-A4ZV-01 11 62435306 62435306 T A METTL12 3'UTR 0.23 TCGA-HC-A4ZV-01 11 62760841 62760841 C A SLC22A8 Intron 0.42 TCGA-HC-A4ZV-01 11 66084351 66084351 C T CD248 Missense_Mutation p.A50T 0.62 deleterious(0.01) possibly_damaging(0.666) TCGA-HC-A4ZV-01 11 67017956 67017956 C A KDM2A Missense_Mutation p.L819M 0.19 tolerated(0.07) benign(0.184) TCGA-HC-A4ZV-01 11 86160951 86160951 A T ME3 Missense_Mutation p.S371T 0.29 tolerated(0.05) benign(0.166) TCGA-HC-A4ZV-01 11 92086237 92086237 G A FAT3 Nonsense_Mutation p.W320* 0.22 TCGA-HC-A4ZV-01 11 94039857 94039857 G A FOLR4 Nonsense_Mutation p.W106* 0.30 TCGA-HC-A4ZV-01 12 100452198 100452198 T A UHRF1BP1L Missense_Mutation p.S953C 0.53 deleterious(0) probably_damaging(0.95) TCGA-HC-A4ZV-01 12 119942914 119942914 G A CCDC60 Missense_Mutation p.R230H 0.05 tolerated(0.07) benign(0.033) TCGA-HC-A4ZV-01 12 21392117 21392117 T C SLCO1B1 Silent p.H690H 0.30 TCGA-HC-A4ZV-01 12 32886710 32886710 A T DNM1L Missense_Mutation p.D503V 0.12 deleterious(0.01) possibly_damaging(0.477) TCGA-HC-A4ZV-01 12 53342844 53342844 C T KRT18 5'UTR 0.52 TCGA-HC-A4ZV-01 12 56915827 56915827 C - RBMS2 Frame_Shift_Del p.R8Gfs*46 0.24 TCGA-HC-A4ZV-01 12 863369 863369 G A WNK1 Missense_Mutation p.G213E 0.10 deleterious(0) unknown(0) TCGA-HC-A4ZV-01 12 9317890 9317890 G T PZP Missense_Mutation p.L778M 0.22 tolerated(0.06) probably_damaging(0.998) TCGA-HC-A4ZV-01 13 32906456 32906456 G C BRCA2 Missense_Mutation p.D281H 0.46 deleterious(0) probably_damaging(0.973) TCGA-HC-A4ZV-01 13 38213401 38213401 T C TRPC4 Silent p.Q710Q 0.28 TCGA-HC-A4ZV-01 14 22471727 22471727 T G TRAV18 Silent p.T50T 0.45 TCGA-HC-A4ZV-01 14 23468239 23468239 T A C14orf93 5'UTR 0.34 TCGA-HC-A4ZV-01 14 38281605 38281605 C T TTC6 Silent p.Y1552Y 0.30 TCGA-HC-A4ZV-01 14 91338504 91338504 T A RPS6KA5 Missense_Mutation p.T775S 0.46 tolerated(0.54) benign(0.003) TCGA-HC-A4ZV-01 14 92403440 92403440 C T FBLN5 Missense_Mutation p.R77Q 0.34 tolerated(0.59) possibly_damaging(0.716) TCGA-HC-A4ZV-01 15 22929865 22929865 G T CYFIP1 Missense_Mutation p.S180I 0.27 deleterious(0) possibly_damaging(0.703) TCGA-HC-A4ZV-01 15 35275428 35275428 G C ZNF770 Missense_Mutation p.L70V 0.21 deleterious(0) probably_damaging(0.996) TCGA-HC-A4ZV-01 15 70959286 70959286 T A UACA Missense_Mutation p.K1246I 0.37 deleterious(0) possibly_damaging(0.713) TCGA-HC-A4ZV-01 16 30749840 30749840 G A SRCAP Missense_Mutation p.A2827T 0.48 unknown(0) TCGA-HC-A4ZV-01 16 9934873 9934873 A T GRIN2A Missense_Mutation p.F473I 0.29 deleterious(0) probably_damaging(0.999) TCGA-HC-A4ZV-01 17 27999097 27999097 T G SSH2 Missense_Mutation p.N195T 0.39 deleterious(0) probably_damaging(0.999) TCGA-HC-A4ZV-01 17 29761110 29761110 C T RAB11FIP4 Silent p.C102C 0.20 TCGA-HC-A4ZV-01 17 34074193 34074193 C T GAS2L2 Missense_Mutation p.M309I 0.34 deleterious(0.01) possibly_damaging(0.643) TCGA-HC-A4ZV-01 17 37903005 37903005 G A GRB7 Missense_Mutation p.S508N 0.04 tolerated(0.12) benign(0.095) TCGA-HC-A4ZV-01 17 38175635 38175635 A C MED24 3'UTR 0.25 TCGA-HC-A4ZV-01 17 44128012 44128012 C T KANSL1 Missense_Mutation p.C636Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-HC-A4ZV-01 17 48741195 48741195 G T ABCC3 Silent p.G384G 0.33 TCGA-HC-A4ZV-01 17 58525052 58525052 G A APPBP2 Nonsense_Mutation p.Q550* 0.33 TCGA-HC-A4ZV-01 17 61908885 61908885 A T PSMC5 Missense_Mutation p.K330M 0.29 deleterious(0) possibly_damaging(0.566) TCGA-HC-A4ZV-01 17 61994611 61994611 C A GH1 3'UTR 0.37 TCGA-HC-A4ZV-01 17 65940437 65940437 A G BPTF Missense_Mutation p.T2217A 0.41 benign(0.023) TCGA-HC-A4ZV-01 17 72350637 72350637 A C KIF19 Missense_Mutation p.E882A 0.29 tolerated(0.18) benign(0.033) TCGA-HC-A4ZV-01 18 12699203 12699203 C A CEP76 Splice_Site p.X99_splice 0.47 TCGA-HC-A4ZV-01 18 2892339 2892339 G C EMILIN2 Missense_Mutation p.W738C 0.41 deleterious(0) probably_damaging(0.999) TCGA-HC-A4ZV-01 19 14887554 14887554 G C EMR2 Silent p.V5V 0.22 TCGA-HC-A4ZV-01 19 16630018 16630018 C G CHERP Missense_Mutation p.K901N 0.41 deleterious(0) benign(0.184) TCGA-HC-A4ZV-01 19 17405251 17405251 T G ABHD8 Missense_Mutation p.N332T 0.32 tolerated(0.07) benign(0.18) TCGA-HC-A4ZV-01 19 18897449 18897449 G C COMP Missense_Mutation p.Q383E 0.38 tolerated(1) benign(0) TCGA-HC-A4ZV-01 19 47773663 47773663 G A CCDC9 Splice_Site p.X301_splice 0.24 TCGA-HC-A4ZV-01 19 49858558 49858558 A G TEAD2 Intron 0.24 TCGA-HC-A4ZV-01 19 50187286 50187286 C G PRMT1 Missense_Mutation p.S172C 0.05 deleterious(0) benign(0.361) TCGA-HC-A4ZV-01 19 51628471 51628471 T G SIGLEC9 Silent p.A80A 0.26 TCGA-HC-A4ZV-01 19 57065052 57065052 G C ZFP28 Splice_Site p.X300_splice 0.28 TCGA-HC-A4ZV-01 19 8670020 8670020 C A ADAMTS10 Silent p.V104V 0.15 TCGA-HC-A4ZV-01 1 101487277 101487277 T C DPH5 Silent p.E60E 0.41 TCGA-HC-A4ZV-01 1 109824258 109824258 G A PSRC1 Missense_Mutation p.P168S 0.34 deleterious(0.02) possibly_damaging(0.625) TCGA-HC-A4ZV-01 1 112524830 112524830 G T KCND3 Missense_Mutation p.F173L 0.08 tolerated(0.25) benign(0.153) TCGA-HC-A4ZV-01 1 12374350 12374350 A C VPS13D Missense_Mutation p.T2372P 0.19 benign(0) TCGA-HC-A4ZV-01 1 156877420 156877420 C T PEAR1 Silent p.S221S 0.49 TCGA-HC-A4ZV-01 1 169483632 169483632 G A F5 Silent p.S2198S 0.28 TCGA-HC-A4ZV-01 1 169483633 169483633 G A F5 Missense_Mutation p.S2198F 0.27 deleterious(0) probably_damaging(0.998) TCGA-HC-A4ZV-01 1 17570695 17570695 G A PADI1 Missense_Mutation p.R650H 0.31 deleterious(0.05) probably_damaging(0.976) TCGA-HC-A4ZV-01 1 17668541 17668541 G C PADI4 Missense_Mutation p.E252D 0.38 deleterious(0) probably_damaging(0.999) TCGA-HC-A4ZV-01 1 19584333 19584333 C G MRTO4 Missense_Mutation p.F116L 0.31 tolerated(0.05) probably_damaging(1) TCGA-HC-A4ZV-01 1 207112706 207112706 C T PIGR Missense_Mutation p.R49Q 0.55 deleterious(0.03) probably_damaging(0.975) TCGA-HC-A4ZV-01 1 236306076 236306076 T G GPR137B Missense_Mutation p.F52V 0.26 tolerated(0.07) possibly_damaging(0.804) TCGA-HC-A4ZV-01 1 27744831 27744831 C G WASF2 Missense_Mutation p.V120L 0.37 tolerated(0.14) unknown(0) TCGA-HC-A4ZV-01 1 39877441 39877441 G T KIAA0754 Nonsense_Mutation p.E366* 0.37 TCGA-HC-A4ZV-01 1 46976632 46976632 A C DMBX1 Missense_Mutation p.K120T 0.24 deleterious(0.03) probably_damaging(1) TCGA-HC-A4ZV-01 1 47904210 47904210 C G FOXD2 Missense_Mutation p.L135V 0.48 deleterious(0.01) probably_damaging(0.998) TCGA-HC-A4ZV-01 1 59147849 59147849 A T MYSM1 Silent p.L289L 0.60 TCGA-HC-A4ZV-01 20 3128064 3128064 C T FASTKD5 Silent p.K551K 0.22 TCGA-HC-A4ZV-01 20 33501245 33501263 GCTTGTGGTGGCCATGCTG - ACSS2 Frame_Shift_Del p.L173Hfs*46 0.25 TCGA-HC-A4ZV-01 20 44506572 44506572 A T ZSWIM3 Missense_Mutation p.I459F 0.39 tolerated(0.06) benign(0.046) TCGA-HC-A4ZV-01 20 60708507 60708507 G T LSM14B Missense_Mutation p.G383V 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-HC-A4ZV-01 20 61513601 61513601 T C DIDO1 Missense_Mutation p.Q1236R 0.27 possibly_damaging(0.528) TCGA-HC-A4ZV-01 20 62384051 62384051 C T ZBTB46 Silent p.K462K 0.39 TCGA-HC-A4ZV-01 21 31710000 31710000 C A KRTAP27-1 5'UTR 0.38 TCGA-HC-A4ZV-01 21 41301036 41301036 G C PCP4 Nonstop_Mutation p.*63Yext*27 0.19 TCGA-HC-A4ZV-01 21 45994012 45994012 T G KRTAP10-4 Missense_Mutation p.V126G 0.12 tolerated(0.32) unknown(0) TCGA-HC-A4ZV-01 21 47987624 47987624 G A DIP2A 3'UTR 0.23 TCGA-HC-A4ZV-01 22 19423224 19423224 G T MRPL40 Missense_Mutation p.K120N 0.34 deleterious(0.03) possibly_damaging(0.678) TCGA-HC-A4ZV-01 22 28193262 28193262 G A MN1 Silent p.G1090G 0.33 TCGA-HC-A4ZV-01 22 38121937 38121937 C T TRIOBP Missense_Mutation p.P1125L 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HC-A4ZV-01 2 101893716 101893716 C A RNF149 Missense_Mutation p.G396V 0.50 deleterious_low_confidence(0) benign(0.439) TCGA-HC-A4ZV-01 2 108627368 108627368 A T SLC5A7 3'UTR 0.20 TCGA-HC-A4ZV-01 2 149806898 149806898 G A KIF5C Missense_Mutation p.R297K 0.17 tolerated(0.05) possibly_damaging(0.527) TCGA-HC-A4ZV-01 2 152830186 152830186 C A CACNB4 Intron 0.31 TCGA-HC-A4ZV-01 2 220312893 220312893 G A SPEG Missense_Mutation p.R338H 0.21 benign(0.439) TCGA-HC-A4ZV-01 2 220333704 220333704 A G SPEG Missense_Mutation p.H1142R 0.17 probably_damaging(0.992) TCGA-HC-A4ZV-01 2 224642531 224642531 T A AP1S3 Missense_Mutation p.Y20F 0.43 tolerated(0.41) benign(0.008) TCGA-HC-A4ZV-01 2 231775091 231775091 A G GPR55 Missense_Mutation p.I196T 0.38 tolerated(0.09) benign(0.034) TCGA-HC-A4ZV-01 2 47256512 47256512 T A TTC7A Silent p.P597P 0.33 TCGA-HC-A4ZV-01 2 75081432 75081432 C A HK2 Missense_Mutation p.L26I 0.36 deleterious(0) probably_damaging(0.993) TCGA-HC-A4ZV-01 2 79365096 79365096 G A REG1P RNA 0.27 TCGA-HC-A4ZV-01 2 79365097 79365097 G T REG1P RNA 0.27 TCGA-HC-A4ZV-01 3 142204017 142204017 A T ATR Silent p.G2062G 0.08 TCGA-HC-A4ZV-01 3 154884795 154884795 G T MME Missense_Mutation p.G589C 0.19 deleterious(0) probably_damaging(1) TCGA-HC-A4ZV-01 3 167525032 167525032 G T SERPINI1 Missense_Mutation p.R294S 0.12 deleterious(0) probably_damaging(0.947) TCGA-HC-A4ZV-01 3 49053448 49053448 G T DALRD3 Missense_Mutation p.D467E 0.31 tolerated(0.68) benign(0.026) TCGA-HC-A4ZV-01 3 9855030 9855030 G A TTLL3 Splice_Site p.X248_splice 0.42 TCGA-HC-A4ZV-01 4 10445228 10445228 G A ZNF518B Missense_Mutation p.R909C 0.28 tolerated(0.09) benign(0.007) TCGA-HC-A4ZV-01 4 134071887 134071887 C T PCDH10 Missense_Mutation p.R198C 0.37 deleterious(0) possibly_damaging(0.891) TCGA-HC-A4ZV-01 4 183714866 183714866 C A TENM3 Silent p.T2347T 0.37 TCGA-HC-A4ZV-01 4 184930515 184930515 C A STOX2 Missense_Mutation p.P175H 0.31 tolerated(0.28) benign(0.176) TCGA-HC-A4ZV-01 4 436020 436020 T C ZNF721 Missense_Mutation p.I746V 0.45 tolerated(0.12) possibly_damaging(0.53) TCGA-HC-A4ZV-01 4 87968120 87968120 C A AFF1 Missense_Mutation p.P145T 0.29 tolerated(0.05) probably_damaging(0.975) TCGA-HC-A4ZV-01 5 120022392 120022392 T C PRR16 Silent p.T278T 0.47 TCGA-HC-A4ZV-01 5 140773100 140773100 G A PCDHGA8 Silent p.P240P 0.29 TCGA-HC-A4ZV-01 5 141694233 141694233 C T SPRY4 Silent p.A170A 0.06 TCGA-HC-A4ZV-01 5 159437759 159437759 G T TTC1 Missense_Mutation p.G75V 0.25 tolerated(0.25) benign(0.009) TCGA-HC-A4ZV-01 5 159626062 159626062 C A FABP6 5'UTR 0.32 TCGA-HC-A4ZV-01 5 179221199 179221199 C A LTC4S Intron 0.24 TCGA-HC-A4ZV-01 5 179264557 179264557 G A C5orf45 Missense_Mutation p.T289I 0.33 tolerated(0.07) benign(0.232) TCGA-HC-A4ZV-01 6 132910499 132910499 C T TAAR5 Silent p.L109L 0.26 TCGA-HC-A4ZV-01 6 138655654 138655654 C T KIAA1244 Missense_Mutation p.P1891S 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-HC-A4ZV-01 6 157803172 157803172 G - ZDHHC14 Frame_Shift_Del p.E41Rfs*16 0.28 TCGA-HC-A4ZV-01 6 159057917 159057917 A C DYNLT1 Missense_Mutation p.V95G 0.15 deleterious(0) probably_damaging(0.929) TCGA-HC-A4ZV-01 6 37336834 37336834 A G RNF8 Missense_Mutation p.N272S 0.23 tolerated(0.42) benign(0.242) TCGA-HC-A4ZV-01 6 76599811 76599811 A G MYO6 Missense_Mutation p.Y899C 0.05 deleterious(0.04) unknown(0) TCGA-HC-A4ZV-01 7 103124148 103124148 T A RELN Missense_Mutation p.Q3378L 0.22 tolerated(0.67) possibly_damaging(0.515) TCGA-HC-A4ZV-01 7 105739619 105739620 AA TTC SYPL1 Frame_Shift_Ins p.F78Efs*9 0.20 TCGA-HC-A4ZV-01 7 117501355 117501355 C G CTTNBP2 Missense_Mutation p.V33L 0.13 tolerated(0.29) benign(0.052) TCGA-HC-A4ZV-01 7 138833005 138833005 A G TTC26 Missense_Mutation p.Y200C 0.05 deleterious(0) probably_damaging(0.984) TCGA-HC-A4ZV-01 7 142162078 142162078 T A TRBV6-6 Missense_Mutation p.Y66F 0.45 tolerated(0.07) benign(0.073) TCGA-HC-A4ZV-01 7 151945553 151945553 C T KMT2C Missense_Mutation p.V656I 0.31 benign(0.001) TCGA-HC-A4ZV-01 7 1608783 1608783 T C PSMG3 Missense_Mutation p.K65E 0.43 deleterious(0.01) benign(0.081) TCGA-HC-A4ZV-01 7 32591878 32591878 C T AVL9 Missense_Mutation p.A167V 0.14 tolerated(0.24) benign(0.099) TCGA-HC-A4ZV-01 7 48266865 48266865 C A ABCA13 Missense_Mutation p.L159I 0.06 probably_damaging(0.972) TCGA-HC-A4ZV-01 7 97860340 97860340 C T TECPR1 Missense_Mutation p.D739N 0.14 deleterious(0) probably_damaging(0.992) TCGA-HC-A4ZV-01 8 101612611 101612611 A T SNX31 Nonsense_Mutation p.L247* 0.12 TCGA-HC-A4ZV-01 8 124664821 124664821 A G KLHL38 Missense_Mutation p.F116L 0.19 deleterious(0.01) benign(0.007) TCGA-HC-A4ZV-01 8 85686864 85686864 A G RALYL Missense_Mutation p.K116E 0.33 deleterious(0.01) possibly_damaging(0.761) TCGA-HC-A4ZV-01 8 86386011 86386011 A T CA2 Missense_Mutation p.T108S 0.36 tolerated(0.09) benign(0.298) TCGA-HC-A4ZV-01 9 125616127 125616127 T C RC3H2 Intron 0.45 TCGA-HC-A4ZV-01 9 18941638 18941638 T C FAM154A Missense_Mutation p.K140E 0.20 tolerated(0.2) possibly_damaging(0.633) TCGA-HC-A4ZV-01 9 27217729 27217729 A G TEK Missense_Mutation p.Y1012C 0.34 deleterious(0) probably_damaging(1) TCGA-HC-A4ZV-01 9 79635159 79635159 C G FOXB2 Missense_Mutation p.Q197E 0.30 tolerated_low_confidence(0.87) unknown(0) TCGA-HC-A4ZV-01 X 129146576 129146576 G C BCORL1 Missense_Mutation p.E37Q 0.54 unknown(0) TCGA-HC-A4ZV-01 X 129147472 129147472 G C BCORL1 Missense_Mutation p.A242P 0.56 unknown(0) TCGA-HC-A4ZV-01 X 134990668 134990668 A C SAGE1 Silent p.R445R 0.63 TCGA-HC-A4ZV-01 X 8553409 8553409 T C KAL1 Missense_Mutation p.D252G 0.85 deleterious(0.02) possibly_damaging(0.75) TCGA-HC-A631-01 10 73468898 73468898 C T C10orf105 3'Flank 0.10 TCGA-HC-A631-01 11 128781513 128781513 G T KCNJ5 Silent p.R115R 0.49 TCGA-HC-A631-01 11 130130970 130130970 C G ZBTB44 Missense_Mutation p.A267P 0.05 tolerated(0.36) benign(0.124) TCGA-HC-A631-01 11 1776173 1776173 C T CTSD Missense_Mutation p.V264I 0.41 tolerated(0.07) benign(0.308) TCGA-HC-A631-01 11 20648387 20648387 C T SLC6A5 Missense_Mutation p.T465M 0.45 tolerated(0.29) benign(0.028) TCGA-HC-A631-01 12 108604003 108604003 C T WSCD2 Silent p.G201G 0.09 TCGA-HC-A631-01 13 108881587 108881587 G A ABHD13 Silent p.L7L 0.13 TCGA-HC-A631-01 13 25021264 25021264 G A PARP4 Nonsense_Mutation p.Q1059* 0.09 TCGA-HC-A631-01 15 25415718 25415718 A G SNORD115-3 5'Flank 0.33 TCGA-HC-A631-01 15 88576148 88576148 G A NTRK3 Missense_Mutation p.P509S 0.41 tolerated(0.08) probably_damaging(0.98) TCGA-HC-A631-01 17 33341759 33341759 C T RFFL Missense_Mutation p.G304R 0.39 tolerated(0.06) possibly_damaging(0.48) TCGA-HC-A631-01 17 4167068 4167068 G A ANKFY1 5'UTR 0.30 TCGA-HC-A631-01 17 48151325 48151325 T A ITGA3 Missense_Mutation p.I401N 0.39 deleterious(0) probably_damaging(0.967) TCGA-HC-A631-01 17 72741283 72741283 G A RAB37 Intron 0.35 TCGA-HC-A631-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.79 deleterious(0) probably_damaging(1) TCGA-HC-A631-01 18 12463458 12463458 G T SPIRE1 Silent p.P510P 0.10 TCGA-HC-A631-01 19 46443285 46443285 G A NOVA2 Missense_Mutation p.R439C 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-HC-A631-01 19 58132424 58132424 G A ZNF134 Missense_Mutation p.E313K 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-HC-A631-01 19 815827 815828 - G LPPR3 Frame_Shift_Ins p.V34Rfs*23 0.42 TCGA-HC-A631-01 1 186647446 186647446 G A PTGS2 Missense_Mutation p.T135I 0.14 deleterious(0) possibly_damaging(0.905) TCGA-HC-A631-01 1 19632608 19632608 C T AKR7A2 Silent p.A274A 0.08 TCGA-HC-A631-01 1 210522367 210522367 C T HHAT Intron 0.35 TCGA-HC-A631-01 1 212208878 212208878 G A INTS7 5'UTR 0.33 TCGA-HC-A631-01 1 227170646 227170646 T G ADCK3 Missense_Mutation p.F331V 0.45 deleterious(0) probably_damaging(0.967) TCGA-HC-A631-01 1 24124221 24124221 G A GALE Silent p.I164I 0.05 TCGA-HC-A631-01 1 45295299 45295299 C T PTCH2 Missense_Mutation p.R357Q 0.08 deleterious(0.02) probably_damaging(0.96) TCGA-HC-A631-01 1 74575077 74575077 C A LRRIQ3 Splice_Site p.X289_splice 0.40 TCGA-HC-A631-01 21 47410706 47410706 G A COL6A1 Missense_Mutation p.G341D 0.41 deleterious(0) unknown(0) TCGA-HC-A631-01 2 166908358 166908358 G A SCN1A Nonsense_Mutation p.Q279* 0.53 TCGA-HC-A631-01 2 174777796 174777796 A G SP3 Splice_Site p.X677_splice 0.33 TCGA-HC-A631-01 2 55844316 55844316 T C SMEK2 Missense_Mutation p.K36E 0.41 tolerated(0.11) benign(0.001) TCGA-HC-A631-01 3 129251241 129251241 C T RHO Silent p.L226L 0.53 TCGA-HC-A631-01 3 168819875 168819875 C T MECOM Missense_Mutation p.R792Q 0.35 deleterious(0.03) probably_damaging(0.939) TCGA-HC-A631-01 3 183994314 183994314 G A ECE2 Intron 0.31 TCGA-HC-A631-01 3 183995186 183995186 G A ECE2 Missense_Mutation p.G255E 0.31 deleterious(0.02) probably_damaging(1) TCGA-HC-A631-01 3 49154755 49154755 G A USP19 Missense_Mutation p.R216W 0.38 deleterious_low_confidence(0.04) benign(0.001) TCGA-HC-A631-01 3 98241632 98241632 C T CLDND1 Intron 0.89 TCGA-HC-A631-01 4 111539631 111539631 C T PITX2 Missense_Mutation p.V209I 0.08 tolerated(0.09) benign(0.31) TCGA-HC-A631-01 4 138452262 138452262 T C PCDH18 Silent p.Q327Q 0.37 TCGA-HC-A631-01 5 159680553 159680553 G A CCNJL Silent p.T380T 0.36 TCGA-HC-A631-01 5 26885932 26885932 C T CDH9 Missense_Mutation p.R558H 0.40 deleterious(0.04) probably_damaging(0.93) TCGA-HC-A631-01 5 82815919 82815919 G A VCAN Silent p.E598E 0.49 TCGA-HC-A631-01 6 123600201 123600201 G A TRDN Nonsense_Mutation p.Q513* 0.30 TCGA-HC-A631-01 6 150147294 150147294 T G LRP11 Intron 0.20 TCGA-HC-A631-01 6 150147295 150147295 C A LRP11 Intron 0.21 TCGA-HC-A631-01 6 51484229 51484229 T C PKHD1 Missense_Mutation p.I3959V 0.51 tolerated_low_confidence(0.43) benign(0.001) TCGA-HC-A631-01 7 141478836 141478836 T G TAS2R4 Missense_Mutation p.L183W 0.38 deleterious(0) probably_damaging(0.956) TCGA-HC-A631-01 8 38699927 38699927 T G TACC1 Missense_Mutation p.Y695D 0.43 deleterious(0) probably_damaging(1) TCGA-HC-A631-01 9 118950481 118950481 C T PAPPA Silent p.P488P 0.41 TCGA-HC-A631-01 9 17791307 17791307 C T SH3GL2 Nonsense_Mutation p.Q235* 0.87 TCGA-HC-A631-01 9 75526938 75526938 C A ALDH1A1 Missense_Mutation p.G379V 0.37 deleterious(0) probably_damaging(1) TCGA-HC-A631-01 X 149895775 149895775 C T MTMR1 Silent p.V139V 0.97 TCGA-HC-A632-01 10 120883051 120883051 G A FAM45A Missense_Mutation p.D222N 0.17 tolerated(0.1) benign(0.02) TCGA-HC-A632-01 10 79742556 79742556 C T POLR3A Missense_Mutation p.R1150K 0.08 tolerated(0.61) benign(0.015) TCGA-HC-A632-01 11 134253732 134253732 G A B3GAT1 Missense_Mutation p.R155C 0.19 deleterious(0.02) possibly_damaging(0.546) TCGA-HC-A632-01 11 1972238 1972238 C T MRPL23 Missense_Mutation p.R43W 0.31 deleterious(0.02) benign(0.26) TCGA-HC-A632-01 11 55111605 55111605 G A OR4A16 Missense_Mutation p.R310K 0.16 tolerated_low_confidence(0.23) benign(0.013) TCGA-HC-A632-01 12 62777656 62777656 A G USP15 Silent p.G375G 0.36 TCGA-HC-A632-01 12 6494476 6494476 T G LTBR Missense_Mutation p.W135G 0.31 tolerated(0.33) benign(0.002) TCGA-HC-A632-01 13 113795319 113795319 C T F10 Missense_Mutation p.R153C 0.32 deleterious(0.04) benign(0.306) TCGA-HC-A632-01 15 72105883 72105883 G T CTD-2524L6.3 5'Flank 0.07 TCGA-HC-A632-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.45 deleterious(0) probably_damaging(1) TCGA-HC-A632-01 17 80847559 80847559 A G TBCD Missense_Mutation p.N517D 0.14 deleterious(0) possibly_damaging(0.844) TCGA-HC-A632-01 18 47753887 47753887 C T CCDC11 Missense_Mutation p.R470H 0.15 deleterious(0.02) benign(0.391) TCGA-HC-A632-01 19 17922985 17922985 C A B3GNT3 3'UTR 0.10 TCGA-HC-A632-01 1 109801499 109801499 C T CELSR2 Silent p.S1252S 0.19 TCGA-HC-A632-01 1 111783985 111783985 C T CHI3L2 Missense_Mutation p.L319F 0.33 tolerated(0.06) benign(0.236) TCGA-HC-A632-01 1 12786051 12786051 C A AADACL3 3'Flank 0.35 TCGA-HC-A632-01 1 155931554 155931554 G A ARHGEF2 Missense_Mutation p.P456S 0.20 tolerated(0.34) benign(0.218) TCGA-HC-A632-01 1 158260938 158260938 G A CD1C Missense_Mutation p.V26I 0.27 tolerated(1) benign(0.002) TCGA-HC-A632-01 1 169586560 169586560 G A SELP Missense_Mutation p.R63C 0.33 deleterious(0.01) possibly_damaging(0.739) TCGA-HC-A632-01 1 19403307 19403307 G T UBR4 Silent p.A5138A 0.31 TCGA-HC-A632-01 1 196658725 196658725 G A CFH Silent p.S380S 0.37 TCGA-HC-A632-01 1 226555255 226555255 G A PARP1 Missense_Mutation p.L778F 0.35 deleterious(0) probably_damaging(0.979) TCGA-HC-A632-01 20 62730104 62730104 C T OPRL1 Silent p.D355D 0.32 TCGA-HC-A632-01 21 34861298 34861298 G A DNAJC28 Missense_Mutation p.H135Y 0.25 deleterious(0) possibly_damaging(0.53) TCGA-HC-A632-01 22 26294373 26294373 G A MYO18B Missense_Mutation p.V1590I 0.35 deleterious(0.05) benign(0.212) TCGA-HC-A632-01 22 38028487 38028487 A G GGA1 Missense_Mutation p.I592V 0.09 tolerated(0.3) benign(0.095) TCGA-HC-A632-01 2 140990833 140990833 G T LRP1B Missense_Mutation p.N4574K 0.36 benign(0.403) TCGA-HC-A632-01 2 241827877 241827877 G A C2orf54 Silent p.R361R 0.20 TCGA-HC-A632-01 2 56419681 56419681 C T CCDC85A Missense_Mutation p.R116W 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A632-01 2 88826009 88826009 G A TEX37 Silent p.P38P 0.12 TCGA-HC-A632-01 2 96072721 96072721 G A FAHD2A Missense_Mutation p.R93Q 0.28 tolerated(0.28) benign(0.035) TCGA-HC-A632-01 3 148459144 148459144 G A AGTR1 Missense_Mutation p.V108I 0.38 tolerated(0.59) benign(0.005) TCGA-HC-A632-01 3 155198914 155198914 G A PLCH1 Missense_Mutation p.T1642M 0.12 tolerated_low_confidence(0.31) benign(0.004) TCGA-HC-A632-01 4 140393995 140393995 T C RAB33B Silent p.H135H 0.41 TCGA-HC-A632-01 4 146824152 146824152 C A ZNF827 Missense_Mutation p.D87Y 0.39 deleterious(0) possibly_damaging(0.776) TCGA-HC-A632-01 4 71640889 71640889 G T RUFY3 Missense_Mutation p.G255C 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-HC-A632-01 5 112179432 112179432 G A APC Missense_Mutation p.R2714H 0.25 benign(0.009) TCGA-HC-A632-01 5 140553173 140553173 G T PCDHB7 Nonsense_Mutation p.E253* 0.41 TCGA-HC-A632-01 5 55094308 55094308 G A DDX4 Silent p.V508V 0.21 TCGA-HC-A632-01 6 10529594 10529594 T A GCNT2 Silent p.A150A 0.41 TCGA-HC-A632-01 6 52053926 52053926 G A IL17A Missense_Mutation p.A102T 0.45 tolerated(0.06) benign(0.011) TCGA-HC-A632-01 8 144995284 144995284 C T PLEC Missense_Mutation p.R3039Q 0.59 possibly_damaging(0.787) TCGA-HC-A632-01 9 33923825 33923825 G A UBAP2 Missense_Mutation p.P922S 0.34 deleterious(0) unknown(0) TCGA-HC-A632-01 X 2726251 2726251 C T XG Silent p.G148G 0.12 TCGA-HC-A6AL-01 10 120070295 120070295 T C FAM204A 3'UTR 0.45 TCGA-HC-A6AL-01 10 89692968 89692968 C - PTEN Frame_Shift_Del p.L152* 0.13 TCGA-HC-A6AL-01 11 49598439 49598439 A G RP11-707M1.1 RNA 0.22 TCGA-HC-A6AL-01 11 55433371 55433371 G T OR4C6 Silent p.T243T 0.39 TCGA-HC-A6AL-01 11 68480780 68480780 G T MTL5 Nonsense_Mutation p.C372* 0.29 TCGA-HC-A6AL-01 12 133683237 133683237 A C ZNF140 Nonstop_Mutation p.*458Cext*39 0.30 TCGA-HC-A6AL-01 12 48741844 48741844 C T ZNF641 Silent p.G24G 0.32 TCGA-HC-A6AL-01 13 28919630 28919630 C T FLT1 Silent p.A769A 0.28 TCGA-HC-A6AL-01 14 30132963 30132963 C G PRKD1 Missense_Mutation p.S213T 0.12 tolerated(0.36) benign(0.002) TCGA-HC-A6AL-01 14 65194559 65194559 C T PLEKHG3 Silent p.N70N 0.16 TCGA-HC-A6AL-01 14 70924676 70924676 T C ADAM21 Missense_Mutation p.F154L 0.17 deleterious(0.02) possibly_damaging(0.903) TCGA-HC-A6AL-01 16 12293501 12293501 G T SNX29 Missense_Mutation p.A547S 0.07 deleterious(0) probably_damaging(0.955) TCGA-HC-A6AL-01 16 49313361 49313361 C - CBLN1 Frame_Shift_Del p.G179Afs*34 0.13 TCGA-HC-A6AL-01 16 55846952 55846952 G T CES1 Missense_Mutation p.Q317K 0.15 tolerated(0.1) benign(0) TCGA-HC-A6AL-01 16 90128666 90128666 A G PRDM7 Intron 0.19 TCGA-HC-A6AL-01 17 3324770 3324770 T C OR3A3 Silent p.N303N 0.23 TCGA-HC-A6AL-01 17 3324771 3324771 A C OR3A3 Missense_Mutation p.T304P 0.22 tolerated(0.64) benign(0.001) TCGA-HC-A6AL-01 17 72846785 72846785 G A GRIN2C Missense_Mutation p.P412L 0.08 deleterious(0) probably_damaging(0.994) TCGA-HC-A6AL-01 17 79914844 79914844 A G NOTUM Missense_Mutation p.F268L 0.24 tolerated(0.05) possibly_damaging(0.897) TCGA-HC-A6AL-01 19 11472140 11472140 C T DKFZP761J1410 Silent p.C188C 0.13 TCGA-HC-A6AL-01 19 14774336 14774336 G A EMR3 Silent p.C31C 0.30 TCGA-HC-A6AL-01 19 17487978 17487978 G C PLVAP Missense_Mutation p.I40M 0.30 deleterious(0) probably_damaging(1) TCGA-HC-A6AL-01 19 36015769 36015769 C T SBSN Missense_Mutation p.A566T 0.14 tolerated(1) possibly_damaging(0.76) TCGA-HC-A6AL-01 19 48949711 48949712 - ACTTT GRWD1 Frame_Shift_Ins p.L89Ffs*17 0.17 TCGA-HC-A6AL-01 19 54646887 54646887 G A CNOT3 Missense_Mutation p.E20K 0.31 deleterious(0) probably_damaging(0.994) TCGA-HC-A6AL-01 1 1019513 1019513 C T C1orf159 Intron 0.13 TCGA-HC-A6AL-01 1 11576180 11576180 A G PTCHD2 Missense_Mutation p.T571A 0.19 deleterious(0) probably_damaging(0.998) TCGA-HC-A6AL-01 1 1386014 1386014 G T ATAD3C 5'UTR 0.47 TCGA-HC-A6AL-01 1 236399660 236399660 G A ERO1LB Silent p.L182L 0.18 TCGA-HC-A6AL-01 1 249150721 249150721 C G ZNF692 Missense_Mutation p.R177S 0.11 tolerated(0.26) benign(0.008) TCGA-HC-A6AL-01 1 43777678 43777678 G T TIE1 Missense_Mutation p.E502D 0.15 deleterious(0.03) probably_damaging(0.996) TCGA-HC-A6AL-01 22 30976074 30976074 C T PES1 Missense_Mutation p.D379N 0.30 deleterious(0) probably_damaging(0.993) TCGA-HC-A6AL-01 22 39826029 39826029 G A TAB1 Silent p.P439P 0.06 TCGA-HC-A6AL-01 22 50943380 50943380 C T LMF2 Missense_Mutation p.G430R 0.40 tolerated(0.11) possibly_damaging(0.458) TCGA-HC-A6AL-01 2 116497321 116497321 T C DPP10 Missense_Mutation p.L239P 0.30 deleterious(0) possibly_damaging(0.57) TCGA-HC-A6AL-01 2 141215220 141215220 A G LRP1B Missense_Mutation p.V3209A 0.07 benign(0.153) TCGA-HC-A6AL-01 2 167279862 167279862 G T SCN7A Silent p.I978I 0.11 TCGA-HC-A6AL-01 3 139077851 139077851 G A COPB2 Missense_Mutation p.P825S 0.08 tolerated(0.2) benign(0.004) TCGA-HC-A6AL-01 3 186917771 186917771 C A RTP1 Missense_Mutation p.N235K 0.32 tolerated(0.14) benign(0.211) TCGA-HC-A6AL-01 3 49455030 49455030 C G AMT Missense_Mutation p.Q385H 0.18 tolerated(0.46) benign(0.007) TCGA-HC-A6AL-01 4 183676360 183676360 A T TENM3 Missense_Mutation p.S1614C 0.31 deleterious(0) possibly_damaging(0.827) TCGA-HC-A6AL-01 4 183710344 183710344 C T TENM3 Silent p.Y1801Y 0.12 TCGA-HC-A6AL-01 4 186299408 186299408 C T LRP2BP 5'UTR 0.11 TCGA-HC-A6AL-01 4 26484871 26484871 G C CCKAR Missense_Mutation p.P221A 0.14 deleterious(0) probably_damaging(0.997) TCGA-HC-A6AL-01 4 39506062 39506062 A G UGDH Missense_Mutation p.I413T 0.09 deleterious(0.01) probably_damaging(0.969) TCGA-HC-A6AL-01 5 140209185 140209185 G A PCDHA6 Silent p.A503A 0.16 TCGA-HC-A6AL-01 5 178194303 178194303 C T AACSP1 RNA 0.16 TCGA-HC-A6AL-01 5 41048475 41048475 C A MROH2B Missense_Mutation p.L545F 0.26 deleterious(0) probably_damaging(0.963) TCGA-HC-A6AL-01 5 442453 442453 G C C5orf55 3'UTR 0.48 TCGA-HC-A6AL-01 6 119234549 119234549 A C MCM9 Missense_Mutation p.V314G 0.17 deleterious(0) probably_damaging(0.987) TCGA-HC-A6AL-01 7 114268807 114268807 A T FOXP2 Intron 0.40 TCGA-HC-A6AL-01 7 149430771 149430771 C T KRBA1 Missense_Mutation p.R909W 0.30 deleterious(0.04) possibly_damaging(0.453) TCGA-HC-A6AL-01 7 151970809 151970809 A T KMT2C Silent p.I331I 0.03 TCGA-HC-A6AL-01 7 38807200 38807200 T C VPS41 Splice_Site p.X396_splice 0.13 TCGA-HC-A6AL-01 7 4824597 4824597 C T AP5Z1 Silent p.A283A 0.23 TCGA-HC-A6AL-01 7 72400574 72400574 T G POM121 Silent p.A135A 0.22 TCGA-HC-A6AL-01 7 92763568 92763568 C T SAMD9L Missense_Mutation p.G573R 0.25 deleterious(0) probably_damaging(0.996) TCGA-HC-A6AL-01 7 97784178 97784178 G A LMTK2 Missense_Mutation p.E187K 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-HC-A6AL-01 8 21960513 21960513 C T FAM160B2 3'UTR 0.70 TCGA-HC-A6AL-01 9 26905927 26905927 A G PLAA Missense_Mutation p.L657P 0.32 deleterious(0) probably_damaging(0.999) TCGA-HC-A6AL-01 9 35618302 35618302 G A CD72 5'UTR 0.12 TCGA-HC-A6AL-01 X 135428548 135428548 A G GPR112 Missense_Mutation p.T895A 0.68 tolerated(0.07) benign(0.257) TCGA-HC-A6AL-01 X 70348523 70348523 G C MED12 Missense_Mutation p.E1144Q 0.56 benign(0.341) TCGA-HC-A6AN-01 10 18134072 18134072 G A MRC1 Intron 0.30 TCGA-HC-A6AN-01 10 21158736 21158736 G A NEBL Missense_Mutation p.T172M 0.35 tolerated(0.14) benign(0.004) TCGA-HC-A6AN-01 11 124252655 124252655 G A OR8B2 Silent p.N195N 0.27 TCGA-HC-A6AN-01 11 128781968 128781968 G T KCNJ5 Missense_Mutation p.R267L 0.36 deleterious(0) probably_damaging(1) TCGA-HC-A6AN-01 11 7846675 7846675 A G OR5P3 Missense_Mutation p.I282T 0.26 deleterious(0.01) possibly_damaging(0.558) TCGA-HC-A6AN-01 12 6125273 6125273 C A VWF Missense_Mutation p.D1813Y 0.18 tolerated(0.23) possibly_damaging(0.751) TCGA-HC-A6AN-01 13 26789603 26789603 C T RNF6 Missense_Mutation p.R139Q 0.06 tolerated(0.4) probably_damaging(0.996) TCGA-HC-A6AN-01 13 30423780 30423780 T C UBL3 5'UTR 0.44 TCGA-HC-A6AN-01 15 48713823 48713823 G A FBN1 Missense_Mutation p.T2544I 0.36 probably_damaging(0.993) TCGA-HC-A6AN-01 16 2011248 2011248 C G NDUFB10 Missense_Mutation p.D75E 0.27 deleterious(0) possibly_damaging(0.569) TCGA-HC-A6AN-01 16 23578315 23578315 T C UBFD1 Silent p.T248T 0.05 TCGA-HC-A6AN-01 17 6733629 6733629 G T TEKT1 Missense_Mutation p.Q23K 0.20 tolerated(0.66) benign(0.01) TCGA-HC-A6AN-01 18 50432638 50432638 T A DCC Missense_Mutation p.S213T 0.38 tolerated(0.51) benign(0.003) TCGA-HC-A6AN-01 19 13063884 13063884 G A RAD23A 3'UTR 0.31 TCGA-HC-A6AN-01 19 18085010 18085010 C T KCNN1 Missense_Mutation p.R105C 0.43 deleterious(0) probably_damaging(0.987) TCGA-HC-A6AN-01 1 111216384 111216384 G A KCNA3 Nonsense_Mutation p.R350* 0.31 TCGA-HC-A6AN-01 1 12052706 12052706 G A MFN2 Silent p.E90E 0.24 TCGA-HC-A6AN-01 1 145561391 145561391 C T ANKRD35 Missense_Mutation p.S360F 0.36 tolerated(0.38) benign(0.005) TCGA-HC-A6AN-01 1 155734751 155734751 T - GON4L Intron 0.24 TCGA-HC-A6AN-01 1 193046080 193046080 A G TROVE2 Missense_Mutation p.E329G 0.26 tolerated(0.06) benign(0.381) TCGA-HC-A6AN-01 1 21926096 21926096 G C RAP1GAP Missense_Mutation p.A620G 0.28 tolerated(0.4) benign(0.004) TCGA-HC-A6AN-01 1 39920741 39920741 G A MACF1 Missense_Mutation p.R4957Q 0.12 benign(0.006) TCGA-HC-A6AN-01 2 218683436 218683436 G T TNS1 Missense_Mutation p.P1103T 0.06 tolerated(0.49) benign(0.003) TCGA-HC-A6AN-01 2 223499164 223499164 C T FARSB Silent p.K184K 0.24 TCGA-HC-A6AN-01 2 238275374 238275374 G A COL6A3 Missense_Mutation p.A1819V 0.32 possibly_damaging(0.478) TCGA-HC-A6AN-01 3 125850358 125850358 G T ALDH1L1 Missense_Mutation p.Q508K 0.10 tolerated(0.16) benign(0.018) TCGA-HC-A6AN-01 3 178916936 178916936 G A PIK3CA Missense_Mutation p.R108H 0.06 deleterious(0.03) probably_damaging(0.983) TCGA-HC-A6AN-01 3 42704607 42704607 G A ZBTB47 Silent p.P575P 0.05 TCGA-HC-A6AN-01 3 71050125 71050126 - TAGCTC FOXP1 In_Frame_Ins p.E354_L355dup 0.18 TCGA-HC-A6AN-01 4 619651 619651 T C PDE6B Missense_Mutation p.V79A 0.30 tolerated(0.19) benign(0.005) TCGA-HC-A6AN-01 5 137721936 137721936 G T KDM3B Missense_Mutation p.D336Y 0.20 deleterious(0) possibly_damaging(0.522) TCGA-HC-A6AN-01 5 176731691 176731691 G A PRELID1 Missense_Mutation p.R53Q 0.19 tolerated(0.12) benign(0.058) TCGA-HC-A6AN-01 5 482257 482257 G T SLC9A3 Missense_Mutation p.P458T 0.35 deleterious(0) probably_damaging(0.998) TCGA-HC-A6AN-01 5 68902990 68902990 T C RP11-848G14.2 RNA 0.15 TCGA-HC-A6AN-01 6 111685156 111685156 G - REV3L Frame_Shift_Del p.P2260Hfs*13 0.26 TCGA-HC-A6AN-01 6 2834226 2834226 C G SERPINB1 Missense_Mutation p.L252F 0.16 tolerated(0.4) benign(0.077) TCGA-HC-A6AN-01 6 90340367 90340367 G C ANKRD6 Missense_Mutation p.A610P 0.24 tolerated(0.21) benign(0.001) TCGA-HC-A6AN-01 7 149174826 149174826 C T ZNF746 Missense_Mutation p.A181T 0.24 tolerated(0.2) probably_damaging(0.988) TCGA-HC-A6AN-01 7 157931053 157931053 C T PTPRN2 Silent p.A355A 0.47 TCGA-HC-A6AN-01 7 31690866 31690866 C A CCDC129 Missense_Mutation p.D924E 0.27 deleterious(0.04) possibly_damaging(0.547) TCGA-HC-A6AN-01 7 77764435 77764435 C A MAGI2 Silent p.V978V 0.30 TCGA-HC-A6AN-01 7 939748 939748 C G ADAP1 Silent p.T262T 0.27 TCGA-HC-A6AN-01 8 140715136 140715136 C T KCNK9 Missense_Mutation p.E34K 0.17 deleterious(0) probably_damaging(0.987) TCGA-HC-A6AO-01 10 112837941 112837941 G A ADRA2A Missense_Mutation p.V63M 0.12 deleterious(0) probably_damaging(0.996) TCGA-HC-A6AO-01 10 134660767 134660767 G T TTC40 Missense_Mutation p.A2004D 0.15 tolerated(0.67) benign(0.06) TCGA-HC-A6AO-01 11 123811140 123811140 G A OR4D5 Missense_Mutation p.V273M 0.38 deleterious(0.02) possibly_damaging(0.867) TCGA-HC-A6AO-01 11 134240925 134240925 C T GLB1L2 Silent p.I413I 0.04 TCGA-HC-A6AO-01 11 64416297 64416297 G T NRXN2 Silent p.G1064G 0.07 TCGA-HC-A6AO-01 12 121471396 121471396 C T OASL Missense_Mutation p.D117N 0.05 tolerated(0.2) benign(0.232) TCGA-HC-A6AO-01 12 122441613 122441613 C T WDR66 Silent p.F1131F 0.37 TCGA-HC-A6AO-01 12 52281870 52281870 G A ANKRD33 5'UTR 0.10 TCGA-HC-A6AO-01 12 56335369 56335369 G A DGKA Splice_Site p.X417_splice 0.34 TCGA-HC-A6AO-01 12 667826 667826 G T B4GALNT3 Missense_Mutation p.E920D 0.10 tolerated(0.81) benign(0.123) TCGA-HC-A6AO-01 13 95899954 95899954 T G ABCC4 Missense_Mutation p.D43A 0.32 deleterious(0) probably_damaging(0.988) TCGA-HC-A6AO-01 14 38061192 38061192 A G FOXA1 Missense_Mutation p.F266S 0.19 deleterious(0) probably_damaging(1) TCGA-HC-A6AO-01 14 58917402 58917402 A G KIAA0586 Missense_Mutation p.E409G 0.18 tolerated(0.15) benign(0.017) TCGA-HC-A6AO-01 15 101592010 101592010 C G LRRK1 Silent p.P1178P 0.06 TCGA-HC-A6AO-01 15 60919520 60919520 C T RORA Silent p.P18P 0.38 TCGA-HC-A6AO-01 15 90320476 90320476 G A MESP2 Silent p.A296A 0.13 TCGA-HC-A6AO-01 16 46766145 46766145 G A MYLK3 Silent p.G479G 0.27 TCGA-HC-A6AO-01 17 73836863 73836863 C T UNC13D Silent p.T221T 0.24 TCGA-HC-A6AO-01 19 22939830 22939830 T C ZNF99 3'Flank 0.12 TCGA-HC-A6AO-01 19 30935519 30935519 C T ZNF536 Silent p.C350C 0.04 TCGA-HC-A6AO-01 19 46119742 46119742 C A EML2 Missense_Mutation p.V697F 0.38 tolerated(0.06) benign(0.006) TCGA-HC-A6AO-01 19 6734270 6734270 G A GPR108 Silent p.P141P 0.26 TCGA-HC-A6AO-01 1 103488378 103488378 A G COL11A1 Missense_Mutation p.Y389H 0.07 probably_damaging(0.987) TCGA-HC-A6AO-01 1 156565530 156565530 C G GPATCH4 Missense_Mutation p.Q201H 0.38 tolerated(0.08) benign(0.059) TCGA-HC-A6AO-01 1 32050623 32050623 C T TINAGL1 Silent p.F281F 0.21 TCGA-HC-A6AO-01 1 3328470 3328470 C T PRDM16 Missense_Mutation p.T570M 0.35 tolerated(0.07) benign(0.238) TCGA-HC-A6AO-01 1 3756209 3756209 G A CEP104 Missense_Mutation p.A233V 0.34 deleterious(0.02) possibly_damaging(0.767) TCGA-HC-A6AO-01 20 25666234 25666234 T G ZNF337 Missense_Mutation p.E73D 0.37 tolerated(0.37) benign(0.217) TCGA-HC-A6AO-01 20 36952275 36952275 G T BPI Nonsense_Mutation p.E258* 0.08 TCGA-HC-A6AO-01 20 52601966 52601966 G T BCAS1 Missense_Mutation p.Q334K 0.36 tolerated(0.06) benign(0.407) TCGA-HC-A6AO-01 21 10862829 10862829 A T IGHV1OR21-1 Missense_Mutation p.K42M 0.15 deleterious(0) probably_damaging(0.997) TCGA-HC-A6AO-01 22 50682160 50682160 C A TUBGCP6 Silent p.G243G 0.13 TCGA-HC-A6AO-01 2 209220075 209220075 G A PIKFYVE 3'UTR 0.42 TCGA-HC-A6AO-01 2 24247038 24247038 G A MFSD2B Missense_Mutation p.A463T 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-HC-A6AO-01 2 43937680 43937680 G A PLEKHH2 Missense_Mutation p.S756N 0.08 tolerated(0.2) benign(0.003) TCGA-HC-A6AO-01 2 62066623 62066623 G T FAM161A Missense_Mutation p.P506T 0.12 tolerated(0.09) benign(0.105) TCGA-HC-A6AO-01 3 109027103 109027103 C T DPPA2 Missense_Mutation p.R145Q 0.33 tolerated(0.35) benign(0.234) TCGA-HC-A6AO-01 3 142499733 142499733 A C TRPC1 Silent p.A274A 0.07 TCGA-HC-A6AO-01 5 140050786 140050786 G A WDR55 3'UTR 0.13 TCGA-HC-A6AO-01 5 140187069 140187069 C T PCDHA4 Silent p.S99S 0.05 TCGA-HC-A6AO-01 5 82876257 82876257 C A VCAN 3'UTR 0.21 TCGA-HC-A6AO-01 6 52148178 52148178 T C MCM3 Silent p.K80K 0.06 TCGA-HC-A6AO-01 6 79692791 79692791 T A PHIP Missense_Mutation p.I861F 0.07 deleterious(0) possibly_damaging(0.888) TCGA-HC-A6AO-01 7 48428693 48428693 C T ABCA13 Silent p.L3844L 0.42 TCGA-HC-A6AO-01 7 48428731 48428731 T A ABCA13 Silent p.A3856A 0.43 TCGA-HC-A6AO-01 8 113256714 113256714 G A CSMD3 Silent p.T3437T 0.67 TCGA-HC-A6AO-01 9 84199168 84199168 T C TLE1 Missense_Mutation p.Y753C 0.18 deleterious(0) probably_damaging(1) TCGA-HC-A6AO-01 X 151092295 151092295 A G MAGEA4 Silent p.E53E 0.43 TCGA-HC-A6AO-01 X 90691469 90691469 G A PABPC5 Missense_Mutation p.R298Q 0.11 deleterious(0.02) possibly_damaging(0.464) TCGA-HC-A6AP-01 10 108431016 108431016 C A SORCS1 Missense_Mutation p.C723F 0.12 deleterious(0) probably_damaging(1) TCGA-HC-A6AP-01 11 117374656 117374656 G A DSCAML1 Missense_Mutation p.R815C 0.05 deleterious(0.01) probably_damaging(0.961) TCGA-HC-A6AP-01 11 55111206 55111206 G A OR4A16 Missense_Mutation p.C177Y 0.05 deleterious_low_confidence(0) probably_damaging(1) TCGA-HC-A6AP-01 11 89165957 89165957 T G NOX4 Silent p.A181A 0.21 TCGA-HC-A6AP-01 12 57493835 57493835 C A STAT6 Missense_Mutation p.W517C 0.11 deleterious(0) probably_damaging(1) TCGA-HC-A6AP-01 12 85677423 85677423 C A ALX1 Missense_Mutation p.N100K 0.14 tolerated(0.83) benign(0.01) TCGA-HC-A6AP-01 14 38061192 38061192 A C FOXA1 Missense_Mutation p.F266C 0.20 deleterious(0) probably_damaging(1) TCGA-HC-A6AP-01 14 78205133 78205133 G A SNW1 Missense_Mutation p.A174V 0.12 tolerated(0.25) benign(0.177) TCGA-HC-A6AP-01 15 64047508 64047508 G C HERC1 Nonsense_Mutation p.S517* 0.19 TCGA-HC-A6AP-01 15 64047509 64047509 A G HERC1 Missense_Mutation p.S517P 0.19 probably_damaging(0.99) TCGA-HC-A6AP-01 17 1943642 1943642 C T DPH1 Missense_Mutation p.R299C 0.07 deleterious(0) probably_damaging(1) TCGA-HC-A6AP-01 17 47696424 47696424 G C SPOP Missense_Mutation p.F133L 0.16 tolerated(0.07) probably_damaging(0.992) TCGA-HC-A6AP-01 19 2226743 2226743 G A DOT1L Missense_Mutation p.G1408D 0.09 deleterious_low_confidence(0.02) benign(0.344) TCGA-HC-A6AP-01 19 38964031 38964031 C T RYR1 Silent p.D1260D 0.05 TCGA-HC-A6AP-01 19 42719342 42719342 G A DEDD2 Missense_Mutation p.R131C 0.19 tolerated(0.06) possibly_damaging(0.689) TCGA-HC-A6AP-01 19 9070676 9070676 C A MUC16 Missense_Mutation p.Q5590H 0.07 unknown(0) TCGA-HC-A6AP-01 2 179398132 179398132 A G TTN Missense_Mutation p.S34404P 0.18 TCGA-HC-A6AP-01 2 242435894 242435894 T G STK25 Missense_Mutation p.E387A 0.08 deleterious_low_confidence(0.04) benign(0.146) TCGA-HC-A6AP-01 2 87085254 87085254 T C CD8B Missense_Mutation p.D110G 0.06 deleterious(0) probably_damaging(0.998) TCGA-HC-A6AP-01 3 108572512 108572512 G A TRAT1 Missense_Mutation p.V117I 0.05 tolerated(0.53) benign(0.001) TCGA-HC-A6AP-01 3 125844491 125844491 C AT ALDH1L1 Frame_Shift_Ins p.A600Ifs*35 0.16 TCGA-HC-A6AP-01 3 189585680 189585680 G C TP63 Missense_Mutation p.G314A 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A6AP-01 3 38753746 38753746 C T SCN10A Missense_Mutation p.C1332Y 0.08 deleterious(0) probably_damaging(1) TCGA-HC-A6AP-01 4 119661874 119661874 T G SEC24D Missense_Mutation p.T728P 0.11 deleterious(0.01) probably_damaging(1) TCGA-HC-A6AP-01 4 71063769 71063769 G T ODAM Missense_Mutation p.Q90H 0.15 tolerated(0.07) possibly_damaging(0.891) TCGA-HC-A6AP-01 5 150422163 150422163 G A TNIP1 Nonsense_Mutation p.Q358* 0.06 TCGA-HC-A6AP-01 5 5462719 5462719 C G KIAA0947 Missense_Mutation p.P1091R 0.07 tolerated(0.13) benign(0.029) TCGA-HC-A6AP-01 6 123319141 123319141 G A CLVS2 Silent p.A73A 0.18 TCGA-HC-A6AP-01 6 151140892 151140892 C T PLEKHG1 Missense_Mutation p.R464W 0.04 deleterious(0) probably_damaging(0.991) TCGA-HC-A6AP-01 6 36651975 36651975 G A CDKN1A Missense_Mutation p.D33N 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A6AP-01 6 46133138 46133138 G A ENPP5 Missense_Mutation p.S331L 0.17 deleterious(0) benign(0.403) TCGA-HC-A6AP-01 6 7230611 7230611 A G RREB1 Missense_Mutation p.E760G 0.06 deleterious(0) possibly_damaging(0.786) TCGA-HC-A6AP-01 9 138379680 138379680 G A PPP1R26 Silent p.G1108G 0.17 TCGA-HC-A6AQ-01 10 25887040 25887040 G A GPR158 Missense_Mutation p.E829K 0.14 deleterious(0.02) possibly_damaging(0.461) TCGA-HC-A6AQ-01 12 101766716 101766716 T C UTP20 Silent p.L2285L 0.10 TCGA-HC-A6AQ-01 13 53419058 53419058 C T PCDH8 Silent p.A950A 0.14 TCGA-HC-A6AQ-01 14 90755415 90755415 C T NRDE2 Silent p.K768K 0.05 TCGA-HC-A6AQ-01 15 42742890 42742890 G A ZNF106 Missense_Mutation p.S504F 0.17 deleterious(0) possibly_damaging(0.613) TCGA-HC-A6AQ-01 16 67264568 67264568 A G FHOD1 Missense_Mutation p.F932L 0.15 deleterious(0) probably_damaging(0.999) TCGA-HC-A6AQ-01 17 12032509 12032509 T C MAP2K4 Silent p.D315D 0.09 TCGA-HC-A6AQ-01 18 21519263 21519263 C T LAMA3 Missense_Mutation p.T2980I 0.12 benign(0.01) TCGA-HC-A6AQ-01 19 18729079 18729079 C T TMEM59L Missense_Mutation p.S260F 0.18 deleterious(0) probably_damaging(0.975) TCGA-HC-A6AQ-01 19 49558205 49558205 G A CGB7 Missense_Mutation p.R26W 0.23 deleterious(0.01) probably_damaging(0.973) TCGA-HC-A6AQ-01 19 9087907 9087907 G T MUC16 Missense_Mutation p.S1303Y 0.06 unknown(0) TCGA-HC-A6AQ-01 1 102269968 102269968 G A OLFM3 Silent p.S401S 0.06 TCGA-HC-A6AQ-01 1 206224397 206224397 A G AVPR1B 5'UTR 0.07 TCGA-HC-A6AQ-01 20 24937950 24937950 G C CST7 Missense_Mutation p.R33P 0.05 tolerated(0.3) benign(0.132) TCGA-HC-A6AQ-01 20 42935657 42935657 C - FITM2 Frame_Shift_Del p.E133Nfs*27 0.16 TCGA-HC-A6AQ-01 20 44576000 44576000 C T PCIF1 Silent p.S602S 0.09 TCGA-HC-A6AQ-01 22 41075565 41075565 G A MCHR1 Missense_Mutation p.G39E 0.07 deleterious_low_confidence(0.03) benign(0.025) TCGA-HC-A6AQ-01 22 50615615 50615615 G T PANX2 Silent p.L158L 0.18 TCGA-HC-A6AQ-01 2 132237644 132237644 G A TUBA3D Silent p.A126A 0.06 TCGA-HC-A6AQ-01 2 8919107 8919107 T A KIDINS220 Missense_Mutation p.N845Y 0.09 deleterious(0) probably_damaging(1) TCGA-HC-A6AQ-01 3 121208992 121208992 C G POLQ Missense_Mutation p.S929T 0.09 tolerated(0.35) benign(0.048) TCGA-HC-A6AQ-01 3 127646682 127646682 T C KBTBD12 Silent p.S382S 0.09 TCGA-HC-A6AQ-01 3 36874403 36874403 G A TRANK1 Missense_Mutation p.S2180L 0.24 deleterious(0.05) benign(0.158) TCGA-HC-A6AQ-01 5 10465119 10465119 A G ROPN1L 3'UTR 0.21 TCGA-HC-A6AQ-01 5 135561808 135561808 T G TRPC7 Missense_Mutation p.K726Q 0.27 deleterious(0.04) benign(0.206) TCGA-HC-A6AQ-01 5 57913641 57913641 G A RAB3C Missense_Mutation p.D66N 0.16 deleterious(0) probably_damaging(0.986) TCGA-HC-A6AQ-01 6 83963441 83963441 G A ME1 Missense_Mutation p.L241F 0.10 deleterious(0) probably_damaging(1) TCGA-HC-A6AQ-01 8 120114623 120114623 G T COLEC10 Missense_Mutation p.G110V 0.29 deleterious(0) probably_damaging(1) TCGA-HC-A6AQ-01 8 73849324 73849324 A C KCNB2 Missense_Mutation p.E578D 0.09 tolerated_low_confidence(0.48) benign(0.403) TCGA-HC-A6AQ-01 8 99441254 99441254 C T KCNS2 Silent p.T349T 0.08 TCGA-HC-A6AQ-01 9 100459525 100459525 G T XPA Missense_Mutation p.P17H 0.10 deleterious(0.03) unknown(0) TCGA-HC-A6AQ-01 X 106358623 106358623 C A RBM41 Missense_Mutation p.G161V 0.33 deleterious(0) probably_damaging(1) TCGA-HC-A6AS-01 10 116734977 116734977 A G TRUB1 Missense_Mutation p.I297V 0.10 tolerated(0.15) benign(0.014) TCGA-HC-A6AS-01 10 31809236 31809236 C T ZEB1 Nonsense_Mutation p.R326* 0.11 TCGA-HC-A6AS-01 11 5730757 5730757 T G TRIM22 Missense_Mutation p.V459G 0.07 deleterious(0) probably_damaging(0.976) TCGA-HC-A6AS-01 11 6262661 6262661 G A CNGA4 Nonsense_Mutation p.W306* 0.15 TCGA-HC-A6AS-01 11 67375940 67375940 A G NDUFV1 Missense_Mutation p.H49R 0.07 deleterious_low_confidence(0.03) probably_damaging(0.939) TCGA-HC-A6AS-01 11 68822730 68822730 C A TPCN2 Nonsense_Mutation p.Y113* 0.13 TCGA-HC-A6AS-01 13 111996453 111996453 G A TEX29 Missense_Mutation p.E147K 0.08 deleterious(0.02) possibly_damaging(0.502) TCGA-HC-A6AS-01 14 24606557 24606557 A G PSME1 Missense_Mutation p.S55G 0.06 deleterious(0.04) benign(0.111) TCGA-HC-A6AS-01 15 30053865 30053865 C T TJP1 Silent p.T267T 0.13 TCGA-HC-A6AS-01 19 56935562 56935562 G A ZNF583 Missense_Mutation p.R512K 0.15 tolerated(0.11) probably_damaging(0.997) TCGA-HC-A6AS-01 1 26449050 26449050 T C PDIK1L Silent p.D336D 0.08 TCGA-HC-A6AS-01 21 47836289 47836289 A C PCNT Missense_Mutation p.N2153H 0.20 possibly_damaging(0.703) TCGA-HC-A6AS-01 2 55462094 55462094 A G RPS27A Missense_Mutation p.Y106C 0.16 deleterious(0.03) benign(0.076) TCGA-HC-A6AS-01 3 10452394 10452394 G A ATP2B2 Missense_Mutation p.A102V 0.06 deleterious(0) probably_damaging(0.997) TCGA-HC-A6AS-01 3 126202303 126202303 A G UROC1 Missense_Mutation p.V660A 0.16 tolerated(0.42) benign(0.388) TCGA-HC-A6AS-01 3 35778739 35778739 G A ARPP21 Missense_Mutation p.R476Q 0.09 deleterious(0.04) benign(0.135) TCGA-HC-A6AS-01 4 119461491 119461491 G C CEP170P1 RNA 0.21 TCGA-HC-A6AS-01 4 121961146 121961146 C T NDNF Silent p.A84A 0.05 TCGA-HC-A6AS-01 4 16590333 16590333 A G LDB2 Silent p.H177H 0.13 TCGA-HC-A6AS-01 5 134785286 134785286 C T TIFAB Missense_Mutation p.R115H 0.23 tolerated(0.71) benign(0.001) TCGA-HC-A6AS-01 5 179745955 179745955 C T GFPT2 Missense_Mutation p.A266T 0.20 deleterious(0) probably_damaging(0.953) TCGA-HC-A6AS-01 5 38431360 38431360 T A EGFLAM Missense_Mutation p.D712E 0.14 tolerated(0.05) benign(0.107) TCGA-HC-A6AS-01 6 159653589 159653589 G A FNDC1 Missense_Mutation p.R682H 0.11 tolerated_low_confidence(0.11) unknown(0) TCGA-HC-A6AS-01 6 24564490 24564490 G A KIAA0319 Nonsense_Mutation p.R791* 0.05 TCGA-HC-A6AS-01 6 26250482 26250482 C T HIST1H3F Missense_Mutation p.V118M 0.10 deleterious_low_confidence(0) benign(0.442) TCGA-HC-A6AS-01 6 26285590 26285590 T G HIST1H4H Silent p.R46R 0.08 TCGA-HC-A6AS-01 6 75814962 75814962 G A COL12A1 Missense_Mutation p.T2742I 0.07 benign(0.249) TCGA-HC-A6AS-01 7 137569739 137569739 A G CREB3L2 Splice_Site p.X424_splice 0.13 TCGA-HC-A6AS-01 7 53104393 53104393 G A POM121L12 3'UTR 0.31 TCGA-HC-A6AS-01 8 53569195 53569195 G A RB1CC1 Missense_Mutation p.A1065V 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HC-A6HX-01 11 49974801 49974801 T A OR4C13 Missense_Mutation p.I276K 0.10 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-HC-A6HX-01 12 109017473 109017473 G A SELPLG Missense_Mutation p.T220I 0.19 deleterious(0.03) unknown(0) TCGA-HC-A6HX-01 12 117723067 117723067 G A NOS1 Missense_Mutation p.A454V 0.08 deleterious(0.02) benign(0.186) TCGA-HC-A6HX-01 12 117977596 117977596 T G KSR2 Missense_Mutation p.S539R 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-HC-A6HX-01 12 48920026 48920026 C T OR8S1 Silent p.L204L 0.10 TCGA-HC-A6HX-01 15 43621413 43621413 G A LCMT2 Silent p.L425L 0.10 TCGA-HC-A6HX-01 15 96875647 96875647 C G NR2F2 Missense_Mutation p.R105G 0.09 deleterious(0) probably_damaging(0.966) TCGA-HC-A6HX-01 16 12875121 12875121 T C CPPED1 Silent p.Q70Q 0.09 TCGA-HC-A6HX-01 17 37618973 37618973 A T CDK12 Nonsense_Mutation p.K217* 0.10 TCGA-HC-A6HX-01 17 37667841 37667841 G A CDK12 Missense_Mutation p.G909E 0.12 probably_damaging(1) TCGA-HC-A6HX-01 17 42293035 42293035 G A UBTF Missense_Mutation p.P154L 0.09 deleterious(0) probably_damaging(0.954) TCGA-HC-A6HX-01 19 17015110 17015110 C T CPAMD8 Missense_Mutation p.V1440M 0.12 tolerated(0.06) benign(0.306) TCGA-HC-A6HX-01 19 52825756 52825756 G A ZNF480 Missense_Mutation p.R418Q 0.12 tolerated(0.86) benign(0.073) TCGA-HC-A6HX-01 1 77763264 77763264 G C AK5 Missense_Mutation p.G146R 0.14 deleterious(0) probably_damaging(1) TCGA-HC-A6HX-01 1 99772408 99772408 G A LPPR4 Missense_Mutation p.E712K 0.09 tolerated(0.36) possibly_damaging(0.84) TCGA-HC-A6HX-01 2 86276306 86276307 - T POLR1A Frame_Shift_Ins p.E818Rfs*23 0.08 TCGA-HC-A6HX-01 3 12632413 12632413 T G RAF1 Silent p.A418A 0.10 TCGA-HC-A6HX-01 3 73450103 73450103 C T PDZRN3 Silent p.Q408Q 0.12 TCGA-HC-A6HX-01 4 170482702 170482702 C A NEK1 Nonsense_Mutation p.E399* 0.12 TCGA-HC-A6HX-01 4 73205333 73205333 G A ADAMTS3 Missense_Mutation p.R247C 0.11 deleterious(0) possibly_damaging(0.462) TCGA-HC-A6HX-01 4 88403694 88403694 T C SPARCL1 Missense_Mutation p.D517G 0.14 deleterious(0) probably_damaging(0.996) TCGA-HC-A6HX-01 6 24446015 24446015 C T GPLD1 Missense_Mutation p.G622E 0.07 deleterious(0) probably_damaging(1) TCGA-HC-A6HX-01 8 131191596 131191596 C A ASAP1 Splice_Site p.X221_splice 0.16 TCGA-HC-A6HX-01 9 74300085 74300085 C T TMEM2 3'UTR 0.06 TCGA-HC-A6HX-01 X 150828276 150828276 C G PASD1 Missense_Mutation p.T270R 0.09 deleterious(0.03) possibly_damaging(0.862) TCGA-HC-A6HX-01 X 37027275 37027275 G T FAM47C Missense_Mutation p.E264D 0.13 tolerated(0.26) benign(0.015) TCGA-HC-A6HX-01 X 37027375 37027375 C T FAM47C Missense_Mutation p.P298S 0.20 deleterious(0.02) possibly_damaging(0.803) TCGA-HC-A6HY-01 10 73767311 73767311 C T CHST3 Silent p.F174F 0.25 TCGA-HC-A6HY-01 11 10800225 10800225 G C CTR9 Splice_Site p.X1032_splice 0.38 TCGA-HC-A6HY-01 11 111228347 111228347 C T POU2AF1 Silent p.P93P 0.08 TCGA-HC-A6HY-01 11 36615227 36615227 A G RAG2 Silent p.S164S 0.39 TCGA-HC-A6HY-01 11 48328501 48328501 A T OR4S1 Missense_Mutation p.I243F 0.30 deleterious(0) possibly_damaging(0.503) TCGA-HC-A6HY-01 11 5462694 5462694 T A OR51I1 Silent p.T17T 0.34 TCGA-HC-A6HY-01 11 58190360 58190360 G T OR5B2 Nonsense_Mutation p.C125* 0.35 TCGA-HC-A6HY-01 12 52797552 52797552 C T KRT82 Missense_Mutation p.G185R 0.28 deleterious(0.05) benign(0.219) TCGA-HC-A6HY-01 12 8290795 8290795 G A CLEC4A Missense_Mutation p.R209H 0.11 tolerated(0.29) benign(0.009) TCGA-HC-A6HY-01 14 105419464 105419464 C T AHNAK2 Missense_Mutation p.G775D 0.34 possibly_damaging(0.646) TCGA-HC-A6HY-01 15 89402162 89402162 G A ACAN Missense_Mutation p.A2116T 0.24 tolerated(0.78) benign(0.184) TCGA-HC-A6HY-01 16 19519049 19519049 T C GDE1 Missense_Mutation p.N199S 0.33 tolerated(1) benign(0.001) TCGA-HC-A6HY-01 19 18856727 18856727 C T CRTC1 Missense_Mutation p.S129F 0.36 deleterious(0) probably_damaging(0.976) TCGA-HC-A6HY-01 19 19309477 19309477 G A RFXANK Silent p.T192T 0.35 TCGA-HC-A6HY-01 19 9069310 9069310 A G MUC16 Missense_Mutation p.S6046P 0.32 unknown(0) TCGA-HC-A6HY-01 1 70504094 70504094 C T LRRC7 Nonsense_Mutation p.Q825* 0.38 TCGA-HC-A6HY-01 1 90048354 90048354 C T LRRC8B Nonsense_Mutation p.Q49* 0.05 TCGA-HC-A6HY-01 22 42611326 42611326 C T TCF20 5'UTR 0.28 TCGA-HC-A6HY-01 2 179584367 179584367 G T TTN Missense_Mutation p.A7951D 0.04 TCGA-HC-A6HY-01 2 179623770 179623770 G A TTN Missense_Mutation p.T3415M 0.25 TCGA-HC-A6HY-01 2 239049642 239049642 G C KLHL30 Missense_Mutation p.V83L 0.31 tolerated(0.25) benign(0.259) TCGA-HC-A6HY-01 2 27599352 27599352 C T SNX17 Missense_Mutation p.P422S 0.23 tolerated(0.19) benign(0.186) TCGA-HC-A6HY-01 4 155298502 155298502 C T DCHS2 Missense_Mutation p.R110Q 0.31 tolerated(1) benign(0.001) TCGA-HC-A6HY-01 4 46067417 46067417 C T GABRG1 Missense_Mutation p.R169Q 0.40 deleterious(0) benign(0.252) TCGA-HC-A6HY-01 5 41048479 41048479 T C MROH2B Missense_Mutation p.K544R 0.06 tolerated(0.43) benign(0.005) TCGA-HC-A6HY-01 6 43038170 43038170 C T KLC4 Missense_Mutation p.R338W 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-HC-A6HY-01 7 95217071 95217071 C T PDK4 Missense_Mutation p.V280I 0.07 tolerated(0.44) probably_damaging(0.986) TCGA-HC-A6HY-01 8 77766907 77766907 G A ZFHX4 Missense_Mutation p.D2584N 0.08 benign(0.178) TCGA-HC-A6HY-01 X 148069054 148069054 G T AFF2 Missense_Mutation p.D1261Y 0.65 deleterious(0) probably_damaging(0.998) TCGA-HC-A76W-01 10 51768942 51768942 A T AGAP6 Missense_Mutation p.T353S 0.29 tolerated(0.37) benign(0.016) TCGA-HC-A76W-01 10 54076171 54076171 T C DKK1 Missense_Mutation p.S175P 0.05 tolerated(0.37) benign(0.004) TCGA-HC-A76W-01 10 91512349 91512349 C T KIF20B Silent p.C1376C 0.35 TCGA-HC-A76W-01 11 122659912 122659912 C T UBASH3B Silent p.S292S 0.29 TCGA-HC-A76W-01 11 64694285 64694285 G T PPP2R5B Nonsense_Mutation p.E101* 0.05 TCGA-HC-A76W-01 12 27540209 27540209 C T ARNTL2 Missense_Mutation p.L205F 0.26 deleterious(0.04) possibly_damaging(0.521) TCGA-HC-A76W-01 12 4853823 4853823 G A GALNT8 Missense_Mutation p.V273M 0.31 deleterious(0.01) probably_damaging(1) TCGA-HC-A76W-01 12 49994194 49994203 GTGTCCTTGC - FAM186B Frame_Shift_Del p.S407Mfs*11 0.27 TCGA-HC-A76W-01 12 57430737 57430737 G A MYO1A Missense_Mutation p.R732W 0.31 deleterious(0) probably_damaging(0.993) TCGA-HC-A76W-01 14 54417158 54417158 G A BMP4 Silent p.V273V 0.26 TCGA-HC-A76W-01 15 102241290 102241290 C T TARSL2 Missense_Mutation p.R440Q 0.32 deleterious(0.02) possibly_damaging(0.581) TCGA-HC-A76W-01 16 23379203 23379205 ACT - SCNN1B In_Frame_Del p.Y269del 0.25 TCGA-HC-A76W-01 17 37341091 37341091 C G CACNB1 Silent p.V225V 0.08 TCGA-HC-A76W-01 18 3094169 3094169 G C MYOM1 Missense_Mutation p.P1288R 0.28 deleterious(0.01) benign(0.425) TCGA-HC-A76W-01 18 34853050 34853050 G C CELF4 Missense_Mutation p.A293G 0.29 tolerated(0.12) possibly_damaging(0.803) TCGA-HC-A76W-01 19 17000463 17000463 C T F2RL3 Silent p.L63L 0.08 TCGA-HC-A76W-01 19 3731956 3731956 C T TJP3 Nonsense_Mutation p.Q222* 0.28 TCGA-HC-A76W-01 19 41932284 41932284 C T B3GNT8 Missense_Mutation p.G134S 0.11 tolerated_low_confidence(0.18) benign(0.012) TCGA-HC-A76W-01 19 51831965 51831965 G A IGLON5 Silent p.G321G 0.33 TCGA-HC-A76W-01 1 159922246 159922246 G A SLAMF9 Missense_Mutation p.S157F 0.12 tolerated(0.08) benign(0.333) TCGA-HC-A76W-01 1 206653815 206653815 C T IKBKE Missense_Mutation p.R456W 0.30 deleterious(0) possibly_damaging(0.582) TCGA-HC-A76W-01 1 232601028 232601028 T G SIPA1L2 Missense_Mutation p.K793T 0.29 deleterious(0) probably_damaging(0.999) TCGA-HC-A76W-01 1 25233874 25233874 C T RUNX3 Silent p.P207P 0.26 TCGA-HC-A76W-01 1 84961652 84961652 T G RPF1 Missense_Mutation p.F263V 0.33 tolerated(0.06) possibly_damaging(0.803) TCGA-HC-A76W-01 20 31889127 31889127 C T BPIFB1 Missense_Mutation p.P279L 0.31 deleterious(0.01) benign(0.295) TCGA-HC-A76W-01 2 179418324 179418324 C T TTN Missense_Mutation p.G29803E 0.06 TCGA-HC-A76W-01 2 207564545 207564545 A G DYTN Missense_Mutation p.W209R 0.34 deleterious(0) probably_damaging(1) TCGA-HC-A76W-01 3 129185799 129185799 T G IFT122 Nonsense_Mutation p.Y261* 0.29 TCGA-HC-A76W-01 3 36570362 36570362 G T STAC Missense_Mutation p.G332V 0.40 deleterious(0) probably_damaging(1) TCGA-HC-A76W-01 3 51992299 51992299 G A PCBP4 Silent p.P330P 0.15 TCGA-HC-A76W-01 3 77666801 77666801 C A ROBO2 Missense_Mutation p.S1160Y 0.30 deleterious(0) possibly_damaging(0.608) TCGA-HC-A76W-01 4 89618405 89618405 G A NAP1L5 Silent p.A167A 0.28 TCGA-HC-A76W-01 5 126676272 126676272 G A MEGF10 Missense_Mutation p.R90H 0.08 deleterious(0) probably_damaging(0.982) TCGA-HC-A76W-01 5 140306725 140306725 G A PCDHAC1 Missense_Mutation p.R83H 0.39 deleterious(0) probably_damaging(1) TCGA-HC-A76W-01 5 78376593 78376593 C T BHMT2 Silent p.C114C 0.07 TCGA-HC-A76W-01 5 94027888 94027888 C T ANKRD32 Silent p.D874D 0.33 TCGA-HC-A76W-01 6 33245991 33245991 G A B3GALT4 Silent p.T265T 0.28 TCGA-HC-A76W-01 6 57512483 57512483 T C PRIM2 3'UTR 0.09 TCGA-HC-A76W-01 8 31015025 31015025 C A WRN Silent p.R1321R 0.08 TCGA-HC-A76W-01 8 36698073 36698073 G A KCNU1 Missense_Mutation p.M537I 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-HC-A76W-01 8 39624425 39624425 G A ADAM2 Silent p.I483I 0.04 TCGA-HC-A76W-01 8 39624531 39624531 G T ADAM2 Missense_Mutation p.S448Y 0.04 deleterious(0.01) probably_damaging(0.951) TCGA-HC-A76W-01 8 74922262 74922262 A T LY96 Missense_Mutation p.N77Y 0.27 tolerated(0.07) probably_damaging(0.945) TCGA-HC-A76W-01 9 108425068 108425068 G A TAL2 Silent p.Q97Q 0.27 TCGA-HC-A76W-01 9 97401598 97401598 A G FBP1 5'UTR 0.29 TCGA-HC-A76W-01 X 15605910 15605910 G C ACE2 Missense_Mutation p.I256M 0.61 deleterious(0.01) possibly_damaging(0.768) TCGA-HC-A76W-01 X 26212572 26212572 G A MAGEB6 Silent p.A203A 0.72 TCGA-HC-A76W-01 X 70462905 70462905 G C ZMYM3 Missense_Mutation p.N1154K 0.52 deleterious(0) probably_damaging(0.986) TCGA-HC-A76X-01 11 32994952 32994952 G C QSER1 Missense_Mutation p.E1610Q 0.29 tolerated(0.06) probably_damaging(1) TCGA-HC-A76X-01 11 61178492 61178492 G A CPSF7 Missense_Mutation p.R490W 0.11 deleterious(0.02) probably_damaging(0.931) TCGA-HC-A76X-01 13 115016141 115016141 G A CDC16 Silent p.L363L 0.50 TCGA-HC-A76X-01 13 77738587 77738587 A G MYCBP2 Splice_Site p.X2145_splice 0.08 TCGA-HC-A76X-01 15 33895402 33895402 C A RYR3 Missense_Mutation p.D667E 0.28 probably_damaging(0.999) TCGA-HC-A76X-01 15 65239792 65239792 G A ANKDD1A Missense_Mutation p.A444T 0.14 deleterious(0.02) probably_damaging(0.982) TCGA-HC-A76X-01 16 10274172 10274172 C T GRIN2A Missense_Mutation p.A33T 0.25 tolerated(0.26) benign(0.057) TCGA-HC-A76X-01 16 51174728 51174728 G A SALL1 Missense_Mutation p.R469C 0.25 deleterious(0) probably_damaging(1) TCGA-HC-A76X-01 17 20922442 20922442 T A USP22 Nonsense_Mutation p.K159* 0.38 TCGA-HC-A76X-01 17 76455960 76455960 C T DNAH17 Missense_Mutation p.A3173T 0.06 possibly_damaging(0.844) TCGA-HC-A76X-01 19 15072861 15072861 G A SLC1A6 Silent p.F296F 0.12 TCGA-HC-A76X-01 19 50180510 50180510 G A PRMT1 5'Flank 0.24 TCGA-HC-A76X-01 19 51200916 51200916 G A SHANK1 Missense_Mutation p.R623C 0.08 benign(0.34) TCGA-HC-A76X-01 1 110555601 110555601 C A AHCYL1 Missense_Mutation p.A187D 0.09 deleterious(0) probably_damaging(0.949) TCGA-HC-A76X-01 1 231060649 231060649 C T TTC13 Missense_Mutation p.M553I 0.40 tolerated(0.39) benign(0.002) TCGA-HC-A76X-01 1 236744591 236744591 C T HEATR1 Missense_Mutation p.V896M 0.07 tolerated(0.5) benign(0.006) TCGA-HC-A76X-01 1 28601484 28601484 G A SESN2 Missense_Mutation p.R390H 0.51 deleterious(0.01) probably_damaging(1) TCGA-HC-A76X-01 1 37282824 37282824 C A GRIK3 Missense_Mutation p.W643L 0.06 deleterious(0) probably_damaging(0.991) TCGA-HC-A76X-01 1 89618421 89618421 C A GBP7 Missense_Mutation p.V120L 0.30 tolerated(0.09) benign(0.314) TCGA-HC-A76X-01 20 42168798 42168798 G A L3MBTL1 Silent p.T705T 0.44 TCGA-HC-A76X-01 20 5967931 5967931 C T MCM8 Nonsense_Mutation p.R723* 0.07 TCGA-HC-A76X-01 2 203160435 203160435 G A NOP58 Missense_Mutation p.V316I 0.42 tolerated(0.4) possibly_damaging(0.572) TCGA-HC-A76X-01 2 207024625 207024625 T C EEF1B2 5'UTR 0.10 TCGA-HC-A76X-01 2 29240760 29240760 G A FAM179A Missense_Mutation p.R433Q 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-HC-A76X-01 3 39125653 39125653 A C WDR48 Missense_Mutation p.K394T 0.36 deleterious(0.02) possibly_damaging(0.875) TCGA-HC-A76X-01 5 140563062 140563062 G A PCDHB16 Missense_Mutation p.E310K 0.08 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-HC-A76X-01 5 153078545 153078545 G A GRIA1 Missense_Mutation p.R465H 0.23 deleterious(0.01) possibly_damaging(0.82) TCGA-HC-A76X-01 5 17275414 17275414 C T BASP1 Missense_Mutation p.A30V 0.27 tolerated(0.06) unknown(0) TCGA-HC-A76X-01 5 70856003 70856003 G T BDP1 Missense_Mutation p.A2479S 0.07 tolerated(0.13) benign(0.027) TCGA-HC-A76X-01 6 31748517 31748517 G C VARS Missense_Mutation p.A921G 0.38 deleterious(0.02) probably_damaging(1) TCGA-HC-A76X-01 6 42146547 42146547 G A GUCA1A Missense_Mutation p.R120H 0.37 tolerated(0.06) possibly_damaging(0.857) TCGA-HC-A76X-01 6 56362658 56362658 C T DST Missense_Mutation p.R4074H 0.25 benign(0.002) TCGA-HC-A76X-01 7 100205618 100205618 A - PCOLCE Frame_Shift_Del p.E415Rfs*18 0.27 TCGA-HC-A76X-01 8 100182325 100182325 C T VPS13B Missense_Mutation p.P756L 0.15 tolerated(1) probably_damaging(0.981) TCGA-HC-A76X-01 9 101611319 101611319 G A GALNT12 Missense_Mutation p.R564Q 0.48 tolerated(0.36) benign(0.142) TCGA-HC-A76X-01 X 153208481 153208481 G A RENBP Silent p.D171D 0.92 TCGA-HC-A8CY-01 10 91066938 91066938 G A IFIT2 Missense_Mutation p.E409K 0.32 tolerated(0.17) benign(0.043) TCGA-HC-A8CY-01 11 103870820 103870820 G T PDGFD Missense_Mutation p.D96E 0.38 tolerated(0.1) probably_damaging(0.946) TCGA-HC-A8CY-01 11 103907477 103907477 C T DDI1 5'UTR 0.08 TCGA-HC-A8CY-01 11 20869195 20869195 G A NELL1 Silent p.K134K 0.33 TCGA-HC-A8CY-01 11 65310638 65310638 T G LTBP3 Missense_Mutation p.N845T 0.06 tolerated(0.54) benign(0.076) TCGA-HC-A8CY-01 11 83691655 83691655 C T DLG2 Missense_Mutation p.G317E 0.40 deleterious(0) probably_damaging(0.999) TCGA-HC-A8CY-01 12 52700020 52700020 C T KRT86 Silent p.I401I 0.38 TCGA-HC-A8CY-01 12 65461530 65461530 A G WIF1 Silent p.N193N 0.38 TCGA-HC-A8CY-01 12 7653874 7653874 G A CD163 Silent p.S106S 0.47 TCGA-HC-A8CY-01 13 101944688 101944688 C T NALCN Missense_Mutation p.A277T 0.30 deleterious(0) probably_damaging(0.975) TCGA-HC-A8CY-01 13 46577302 46577302 G A ZC3H13 Nonsense_Mutation p.R306* 0.12 TCGA-HC-A8CY-01 14 23019590 23019590 C T TRAC Missense_Mutation p.R137W 0.16 deleterious(0) probably_damaging(0.998) TCGA-HC-A8CY-01 15 57731273 57731273 A C CGNL1 Missense_Mutation p.K359T 0.41 deleterious(0) probably_damaging(0.984) TCGA-HC-A8CY-01 15 65621731 65621731 G A IGDCC3 Silent p.P734P 0.05 TCGA-HC-A8CY-01 15 67073650 67073650 G A SMAD6 Missense_Mutation p.R423H 0.19 deleterious(0) possibly_damaging(0.59) TCGA-HC-A8CY-01 16 77232251 77232252 - T MON1B 3'UTR 0.23 TCGA-HC-A8CY-01 17 10222452 10222452 C T MYH13 Silent p.T1131T 0.34 TCGA-HC-A8CY-01 17 33430506 33430506 C T RAD51L3-RFFL Missense_Mutation p.V53I 0.35 tolerated_low_confidence(0.77) benign(0.047) TCGA-HC-A8CY-01 17 6513363 6513363 C T KIAA0753 Missense_Mutation p.A555T 0.09 tolerated(0.39) benign(0.031) TCGA-HC-A8CY-01 18 5410606 5410606 G A EPB41L3 Missense_Mutation p.R694C 0.56 deleterious(0) possibly_damaging(0.677) TCGA-HC-A8CY-01 19 30935474 30935474 C T ZNF536 Silent p.N335N 0.04 TCGA-HC-A8CY-01 19 3179125 3179125 G A S1PR4 Missense_Mutation p.R112H 0.47 tolerated(0.39) benign(0.01) TCGA-HC-A8CY-01 19 56206217 56206217 A G EPN1 Missense_Mutation p.T550A 0.45 tolerated(0.2) possibly_damaging(0.626) TCGA-HC-A8CY-01 19 9046680 9046680 G A MUC16 Missense_Mutation p.P11651S 0.07 benign(0) TCGA-HC-A8CY-01 1 154543704 154543704 C T CHRNB2 Silent p.A135A 0.28 TCGA-HC-A8CY-01 1 155057707 155057707 T C EFNA3 Missense_Mutation p.M90T 0.19 deleterious(0) probably_damaging(0.998) TCGA-HC-A8CY-01 2 210560413 210560413 A G MAP2 Missense_Mutation p.I1173M 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.739) TCGA-HC-A8CY-01 3 130698121 130698121 G T ATP2C1 Silent p.L567L 0.12 TCGA-HC-A8CY-01 3 14545076 14545076 C A GRIP2 Intron 0.22 TCGA-HC-A8CY-01 3 167045902 167045902 T C ZBBX Silent p.V230V 0.28 TCGA-HC-A8CY-01 3 7340480 7340480 C T GRM7 Silent p.A282A 0.44 TCGA-HC-A8CY-01 3 8579031 8579031 C T LMCD1 Missense_Mutation p.R98W 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A8CY-01 4 164394537 164394537 G A TKTL2 Missense_Mutation p.P117L 0.31 deleterious(0.01) benign(0.009) TCGA-HC-A8CY-01 4 7741958 7741958 C T SORCS2 Silent p.N1149N 0.44 TCGA-HC-A8CY-01 5 121187964 121187964 C T FTMT Silent p.S102S 0.08 TCGA-HC-A8CY-01 5 23524526 23524526 G A PRDM9 Missense_Mutation p.R345Q 0.22 tolerated(0.22) benign(0.1) TCGA-HC-A8CY-01 5 54327292 54327292 G A GZMK Missense_Mutation p.G155E 0.31 deleterious(0) probably_damaging(1) TCGA-HC-A8CY-01 7 2752291 2752291 G T AMZ1 Missense_Mutation p.D426Y 0.77 deleterious_low_confidence(0) benign(0.299) TCGA-HC-A8CY-01 7 32110078 32110078 G A PDE1C Intron 0.12 TCGA-HC-A8CY-01 8 110980218 110980218 A T KCNV1 3'UTR 0.24 TCGA-HC-A8CY-01 X 147084823 147084824 - T FMR1NB Frame_Shift_Ins p.F130Lfs*17 0.13 TCGA-HC-A8D0-01 11 8435222 8435222 C T STK33 Silent p.S388S 0.09 TCGA-HC-A8D0-01 12 123661278 123661278 G A MPHOSPH9 Missense_Mutation p.L653F 0.10 tolerated(0.08) possibly_damaging(0.844) TCGA-HC-A8D0-01 12 133252018 133252037 TGTACTCCCCCTGGCTGTCC - POLE Frame_Shift_Del p.D392Gfs*25 0.10 TCGA-HC-A8D0-01 15 42446617 42446617 G A PLA2G4F Missense_Mutation p.T75M 0.08 deleterious(0) probably_damaging(0.995) TCGA-HC-A8D0-01 16 14972641 14972641 C G NOMO1 Missense_Mutation p.R903G 0.13 deleterious(0) probably_damaging(1) TCGA-HC-A8D0-01 16 30035560 30035560 A T C16orf92 3'UTR 0.16 TCGA-HC-A8D0-01 16 89789741 89789746 CGGGGC - ZNF276 In_Frame_Del p.G211_A212del 0.17 TCGA-HC-A8D0-01 17 38252764 38252764 C T NR1D1 Missense_Mutation p.R179H 0.06 deleterious(0) probably_damaging(0.967) TCGA-HC-A8D0-01 17 7140074 7140074 G A PHF23 Missense_Mutation p.P58S 0.07 tolerated(0.8) benign(0.078) TCGA-HC-A8D0-01 18 10696535 10696535 G A PIEZO2 Missense_Mutation p.T2164M 0.08 deleterious(0) benign(0.238) TCGA-HC-A8D0-01 19 49573832 49573832 G A KCNA7 Missense_Mutation p.R287C 0.07 deleterious(0) probably_damaging(1) TCGA-HC-A8D0-01 19 8137034 8137034 C T FBN3 Silent p.P2662P 0.08 TCGA-HC-A8D0-01 1 109756574 109756574 C T SARS 5'UTR 0.27 TCGA-HC-A8D0-01 1 117150673 117150673 G A IGSF3 Silent p.S371S 0.17 TCGA-HC-A8D0-01 1 201046206 201046206 G A CACNA1S Missense_Mutation p.R557C 0.06 deleterious(0) probably_damaging(0.971) TCGA-HC-A8D0-01 1 67299306 67299306 G A WDR78 Nonsense_Mutation p.R659* 0.09 TCGA-HC-A8D0-01 21 42866285 42866285 G C TMPRSS2 Nonsense_Mutation p.S116* 0.14 TCGA-HC-A8D0-01 22 23437931 23437931 C G GNAZ Missense_Mutation p.R17G 0.15 deleterious(0.01) probably_damaging(0.913) TCGA-HC-A8D0-01 2 163291772 163291772 G A KCNH7 Silent p.F630F 0.17 TCGA-HC-A8D0-01 2 163292035 163292035 G A KCNH7 Nonsense_Mutation p.R543* 0.21 TCGA-HC-A8D0-01 3 12858463 12858463 G A CAND2 Missense_Mutation p.A678T 0.11 tolerated(0.67) benign(0.296) TCGA-HC-A8D0-01 3 179529651 179529651 C A PEX5L Missense_Mutation p.Q364H 0.13 tolerated(0.06) probably_damaging(0.996) TCGA-HC-A8D0-01 3 49698533 49698533 C A BSN Silent p.G3085G 0.11 TCGA-HC-A8D0-01 3 52857696 52857696 T C ITIH4 Missense_Mutation p.N472S 0.13 deleterious(0.02) benign(0.081) TCGA-HC-A8D0-01 4 100543849 100543849 G A MTTP Silent p.K843K 0.23 TCGA-HC-A8D0-01 5 112175949 112175949 C T APC Missense_Mutation p.A1553V 0.15 benign(0.002) TCGA-HC-A8D0-01 5 140257255 140257255 C T PCDHA12 Missense_Mutation p.A733V 0.25 tolerated_low_confidence(0.06) benign(0.004) TCGA-HC-A8D0-01 5 140590067 140590067 C T PCDHB12 Missense_Mutation p.R530C 0.27 deleterious_low_confidence(0.02) benign(0.077) TCGA-HC-A8D0-01 5 180377516 180377516 C T BTNL8 Missense_Mutation p.T492M 0.20 tolerated(0.08) benign(0.001) TCGA-HC-A8D0-01 6 167754428 167754428 G A TTLL2 Missense_Mutation p.R347H 0.08 tolerated(0.59) benign(0.001) TCGA-HC-A8D0-01 7 113519011 113519011 T C PPP1R3A Silent p.E712E 0.13 TCGA-HC-A8D0-01 7 140373323 140373323 C T ADCK2 Silent p.L65L 0.17 TCGA-HC-A8D0-01 7 146829413 146829413 C T CNTNAP2 Missense_Mutation p.P387L 0.26 deleterious(0.02) benign(0.031) TCGA-HC-A8D0-01 7 4088996 4088996 G A SDK1 Silent p.P873P 0.08 TCGA-HC-A8D0-01 7 81667507 81667507 G A CACNA2D1 Silent p.V308V 0.04 TCGA-HC-A8D0-01 X 152721738 152721738 G C HAUS7 Missense_Mutation p.H240Q 0.26 tolerated(1) benign(0) TCGA-HC-A8D0-01 X 1712837 1712837 T A AKAP17A Missense_Mutation p.L161Q 0.15 tolerated(0.71) benign(0.059) TCGA-HC-A8D1-01 10 104414440 104414440 G A TRIM8 Missense_Mutation p.E201K 0.12 tolerated(0.34) possibly_damaging(0.493) TCGA-HC-A8D1-01 10 15649742 15649742 G T ITGA8 Silent p.R566R 0.18 TCGA-HC-A8D1-01 11 25071608 25071608 A C LUZP2 Missense_Mutation p.N264H 0.09 tolerated(0.2) benign(0.264) TCGA-HC-A8D1-01 11 36594954 36594954 C T RAG1 Missense_Mutation p.R34W 0.17 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-HC-A8D1-01 11 92085432 92085432 G A FAT3 Missense_Mutation p.V52M 0.09 possibly_damaging(0.896) TCGA-HC-A8D1-01 12 40697755 40697755 G A LRRK2 Missense_Mutation p.R1199Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-HC-A8D1-01 12 56429245 56429245 C T IKZF4 3'UTR 0.21 TCGA-HC-A8D1-01 12 72278651 72278651 T C TBC1D15 Missense_Mutation p.L135P 0.08 deleterious(0) probably_damaging(1) TCGA-HC-A8D1-01 14 24884232 24884232 G A NYNRIN Missense_Mutation p.A1093T 0.17 tolerated(0.29) benign(0.359) TCGA-HC-A8D1-01 16 31213083 31213083 G A PYCARD Silent p.Y137Y 0.05 TCGA-HC-A8D1-01 16 84778363 84778363 C T USP10 Silent p.L92L 0.17 TCGA-HC-A8D1-01 19 45494556 45494556 A G CLPTM1 Missense_Mutation p.S494G 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-HC-A8D1-01 19 7970733 7970733 A G MAP2K7 Intron 0.19 TCGA-HC-A8D1-01 1 151337077 151337077 G A SELENBP1 Missense_Mutation p.A454V 0.05 tolerated(0.59) benign(0.006) TCGA-HC-A8D1-01 1 154988869 154988869 A G ZBTB7B Missense_Mutation p.D477G 0.18 deleterious(0) possibly_damaging(0.482) TCGA-HC-A8D1-01 1 205884419 205884419 G A SLC26A9 Intron 0.17 TCGA-HC-A8D1-01 20 13894588 13894588 G A SEL1L2 Missense_Mutation p.A130V 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A8D1-01 20 3673297 3673297 G A SIGLEC1 Silent p.L1301L 0.19 TCGA-HC-A8D1-01 22 30950959 30950959 C T GAL3ST1 Missense_Mutation p.R418H 0.29 deleterious(0) probably_damaging(0.978) TCGA-HC-A8D1-01 22 33700368 33700368 C T LARGE Missense_Mutation p.R526H 0.07 deleterious(0) probably_damaging(1) TCGA-HC-A8D1-01 2 176996330 176996330 T G HOXD8 Missense_Mutation p.L288R 0.21 tolerated_low_confidence(0.35) benign(0.004) TCGA-HC-A8D1-01 2 233899065 233899065 C T NEU2 Silent p.I147I 0.16 TCGA-HC-A8D1-01 3 37818970 37818970 A G ITGA9 Missense_Mutation p.I877V 0.26 tolerated(0.36) probably_damaging(0.934) TCGA-HC-A8D1-01 3 58148895 58148895 C G FLNB Missense_Mutation p.R2377G 0.16 tolerated(0.09) probably_damaging(0.986) TCGA-HC-A8D1-01 5 160114831 160114831 C T ATP10B Missense_Mutation p.R84Q 0.11 tolerated(0.33) benign(0.001) TCGA-HC-A8D1-01 5 54558526 54558526 C T DHX29 Missense_Mutation p.A1254T 0.07 tolerated(0.07) possibly_damaging(0.677) TCGA-HC-A8D1-01 6 27783060 27783060 G C HIST1H2BM Missense_Mutation p.R80P 0.18 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-HC-A8D1-01 6 30138773 30138773 G A TRIM15 Missense_Mutation p.E290K 0.21 tolerated(0.07) benign(0.052) TCGA-HC-A8D1-01 7 44575523 44575523 C A NPC1L1 Silent p.L633L 0.10 TCGA-HC-A8D1-01 X 150840968 150840968 A G PASD1 Missense_Mutation p.Q584R 0.40 deleterious(0.04) benign(0.133) TCGA-HC-A9TE-01 10 135009218 135009218 G A KNDC1 Missense_Mutation p.V543I 0.18 tolerated(0.24) benign(0.028) TCGA-HC-A9TE-01 10 5497027 5497027 C A NET1 Silent p.I381I 0.16 TCGA-HC-A9TE-01 10 70225550 70225550 C T DNA2 Missense_Mutation p.R240H 0.16 tolerated(0.2) benign(0.045) TCGA-HC-A9TE-01 11 396954 396954 C G PKP3 Silent p.A151A 0.54 TCGA-HC-A9TE-01 12 104697887 104697887 G - EID3 Frame_Shift_Del p.V59* 0.13 TCGA-HC-A9TE-01 12 56231394 56231394 G C MMP19 Missense_Mutation p.P378R 0.39 deleterious(0.02) benign(0.033) TCGA-HC-A9TE-01 13 46541978 46541978 C G ZC3H13 Missense_Mutation p.D1328H 0.09 unknown(0) TCGA-HC-A9TE-01 14 20847208 20847208 G A TEP1 Silent p.S1728S 0.27 TCGA-HC-A9TE-01 14 91592812 91592812 T G C14orf159 Intron 0.43 TCGA-HC-A9TE-01 15 22929856 22929856 T C CYFIP1 Missense_Mutation p.M177T 0.11 deleterious(0.01) benign(0.244) TCGA-HC-A9TE-01 15 45059579 45059579 G A TRIM69 Missense_Mutation p.R371K 0.15 tolerated(0.78) benign(0.001) TCGA-HC-A9TE-01 15 59406974 59406974 C T CCNB2 Missense_Mutation p.R166C 0.32 deleterious(0) probably_damaging(0.986) TCGA-HC-A9TE-01 15 83350235 83350235 G A AP3B2 Missense_Mutation p.A153V 0.07 deleterious(0.02) possibly_damaging(0.758) TCGA-HC-A9TE-01 16 2011190 2011190 A G NDUFB10 Missense_Mutation p.Y56C 0.34 tolerated(0.09) probably_damaging(0.996) TCGA-HC-A9TE-01 16 70010624 70010624 C T PDXDC2P RNA 0.08 TCGA-HC-A9TE-01 16 88901690 88901690 C T GALNS Missense_Mutation p.V277I 0.30 tolerated(1) benign(0.002) TCGA-HC-A9TE-01 17 39551746 39551746 G A KRT31 Missense_Mutation p.R240C 0.11 deleterious(0.03) probably_damaging(0.969) TCGA-HC-A9TE-01 17 68128440 68128440 G A KCNJ16 Missense_Mutation p.R71H 0.27 deleterious(0) probably_damaging(0.999) TCGA-HC-A9TE-01 17 7578485 7578485 A - TP53 Frame_Shift_Del p.S149Pfs*21 0.45 TCGA-HC-A9TE-01 17 7802839 7802839 G T CHD3 Missense_Mutation p.G900V 0.18 probably_damaging(0.988) TCGA-HC-A9TE-01 18 29446818 29446820 GAC - TRAPPC8 In_Frame_Del p.C861_H862delinsY 0.32 TCGA-HC-A9TE-01 18 61232706 61232706 C T SERPINB12 Missense_Mutation p.T225M 0.16 tolerated(0.19) benign(0.009) TCGA-HC-A9TE-01 18 7034683 7034683 C A LAMA1 Nonsense_Mutation p.G616* 0.11 TCGA-HC-A9TE-01 19 15300085 15300085 G A NOTCH3 Silent p.I397I 0.44 TCGA-HC-A9TE-01 19 17919012 17919012 C T B3GNT3 Silent p.R132R 0.16 TCGA-HC-A9TE-01 19 36134545 36134545 G A ETV2 Missense_Mutation p.G202D 0.16 deleterious(0.01) benign(0.152) TCGA-HC-A9TE-01 19 42813821 42813821 C T PRR19 Missense_Mutation p.R29C 0.33 deleterious(0) probably_damaging(0.999) TCGA-HC-A9TE-01 19 46122422 46122422 C T EML2 Missense_Mutation p.A585T 0.14 deleterious(0.02) possibly_damaging(0.474) TCGA-HC-A9TE-01 19 55918270 55918270 T C UBE2S Missense_Mutation p.T22A 0.10 tolerated(0.55) benign(0.002) TCGA-HC-A9TE-01 19 9063011 9063011 C T MUC16 Silent p.V8145V 0.13 TCGA-HC-A9TE-01 1 150941602 150941602 G T CERS2 5'UTR 0.50 TCGA-HC-A9TE-01 1 185902932 185902932 G A HMCN1 Missense_Mutation p.A602T 0.17 benign(0.372) TCGA-HC-A9TE-01 1 224318220 224318220 G A FBXO28 Missense_Mutation p.G105E 0.08 deleterious(0.02) possibly_damaging(0.873) TCGA-HC-A9TE-01 1 66384363 66384363 G C PDE4B Silent p.G42G 0.06 TCGA-HC-A9TE-01 20 47879947 47879947 C T ZNFX1 Missense_Mutation p.G742D 0.17 deleterious(0) probably_damaging(1) TCGA-HC-A9TE-01 21 40584626 40584626 C A BRWD1 Missense_Mutation p.S1289I 0.19 deleterious(0.05) benign(0.23) TCGA-HC-A9TE-01 22 30202490 30202490 A C ASCC2 Missense_Mutation p.L357V 0.54 tolerated(0.78) benign(0.001) TCGA-HC-A9TE-01 2 179414986 179414986 C T TTN Missense_Mutation p.E30527K 0.08 TCGA-HC-A9TE-01 2 27455407 27455407 C T CAD Nonsense_Mutation p.Q913* 0.44 TCGA-HC-A9TE-01 2 84517901 84517901 G A FUNDC2P2 RNA 0.53 TCGA-HC-A9TE-01 2 97527357 97527357 G C SEMA4C Missense_Mutation p.S544W 0.28 deleterious(0.01) possibly_damaging(0.838) TCGA-HC-A9TE-01 3 121350802 121350802 G A HCLS1 Missense_Mutation p.P451L 0.06 deleterious(0) probably_damaging(0.913) TCGA-HC-A9TE-01 3 148857949 148857949 T C HPS3 Missense_Mutation p.Y126H 0.14 deleterious(0.01) benign(0.136) TCGA-HC-A9TE-01 3 186954108 186954108 G A MASP1 Silent p.T517T 0.23 TCGA-HC-A9TE-01 3 19962047 19962047 T A EFHB Missense_Mutation p.I268F 0.08 tolerated(0.39) benign(0.006) TCGA-HC-A9TE-01 3 43591240 43591240 T C ANO10 Missense_Mutation p.D590G 0.09 tolerated(0.05) benign(0.009) TCGA-HC-A9TE-01 3 93605197 93605197 T A PROS1 Missense_Mutation p.S436C 0.11 deleterious(0) possibly_damaging(0.895) TCGA-HC-A9TE-01 4 69696453 69696453 C T UGT2B10 Silent p.N481N 0.26 TCGA-HC-A9TE-01 4 70080378 70080378 C T UGT2B11 Silent p.G21G 0.57 TCGA-HC-A9TE-01 5 137451449 137451449 C T NME5 Nonsense_Mutation p.W187* 0.17 TCGA-HC-A9TE-01 5 137853306 137853306 G T ETF1 Missense_Mutation p.P116T 0.08 deleterious(0) probably_damaging(0.988) TCGA-HC-A9TE-01 5 140503073 140503073 C G PCDHB4 Missense_Mutation p.P498R 0.16 deleterious_low_confidence(0.01) benign(0.309) TCGA-HC-A9TE-01 5 41160418 41160418 G A C6 Missense_Mutation p.R504W 0.19 deleterious(0) probably_damaging(1) TCGA-HC-A9TE-01 5 76251513 76251513 C T CRHBP Silent p.F123F 0.08 TCGA-HC-A9TE-01 6 39159391 39159391 G A KCNK5 Missense_Mutation p.R259W 0.17 deleterious(0) probably_damaging(0.998) TCGA-HC-A9TE-01 6 74440153 74440153 C T CD109 Silent p.R121R 0.14 TCGA-HC-A9TE-01 7 73150932 73150932 C T ABHD11 Missense_Mutation p.R302H 0.09 tolerated(0.05) benign(0.053) TCGA-HC-A9TE-01 8 57026322 57026322 C A MOS Missense_Mutation p.V74L 0.10 deleterious(0) probably_damaging(0.999) TCGA-HC-A9TE-01 9 27948936 27948936 G T LINGO2 Missense_Mutation p.D578E 0.18 tolerated(1) probably_damaging(0.991) TCGA-HC-A9TE-01 9 396793 396793 C T DOCK8 Silent p.S993S 0.12 TCGA-HC-A9TE-01 X 115304403 115304403 C T AGTR2 Silent p.C290C 0.38 TCGA-HC-A9TE-01 X 17739683 17739683 G A NHS Silent p.P325P 0.05 TCGA-HC-A9TE-01 X 23397963 23397963 G A PTCHD1 Missense_Mutation p.V203M 0.33 deleterious(0) probably_damaging(0.999) TCGA-HC-A9TE-01 X 3229596 3229596 G A MXRA5 Silent p.A2216A 0.79 TCGA-HC-A9TH-01 10 101835691 101835691 C T CPN1 Missense_Mutation p.G133S 0.19 deleterious(0) probably_damaging(1) TCGA-HC-A9TH-01 10 13275576 13275576 C T UCMA Missense_Mutation p.R61H 0.39 deleterious(0.04) benign(0.201) TCGA-HC-A9TH-01 11 1086413 1086413 C T MUC2 Missense_Mutation p.P1041L 0.36 possibly_damaging(0.629) TCGA-HC-A9TH-01 11 46333948 46333948 C A CREB3L1 Missense_Mutation p.P276T 0.14 deleterious(0.01) probably_damaging(0.972) TCGA-HC-A9TH-01 12 112518881 112518881 T A NAA25 Missense_Mutation p.M154L 0.26 deleterious(0.01) benign(0.174) TCGA-HC-A9TH-01 12 121882032 121882032 C T KDM2B Missense_Mutation p.G745D 0.07 deleterious(0) possibly_damaging(0.726) TCGA-HC-A9TH-01 12 129559588 129559588 C A TMEM132D Missense_Mutation p.C711F 0.27 deleterious(0) possibly_damaging(0.452) TCGA-HC-A9TH-01 12 132530428 132530428 C A EP400 Missense_Mutation p.P2395T 0.20 unknown(0) TCGA-HC-A9TH-01 12 13769401 13769401 C T GRIN2B Missense_Mutation p.R439H 0.31 tolerated(0.49) benign(0.143) TCGA-HC-A9TH-01 12 27542200 27542200 C A ARNTL2 Nonsense_Mutation p.S249* 0.26 TCGA-HC-A9TH-01 12 5603787 5603787 G A NTF3 Missense_Mutation p.R149Q 0.19 tolerated(0.32) possibly_damaging(0.885) TCGA-HC-A9TH-01 12 85674179 85674179 G A ALX1 Missense_Mutation p.G47D 0.06 tolerated_low_confidence(0.07) benign(0.022) TCGA-HC-A9TH-01 12 98848707 98848707 C T SLC9A7P1 RNA 0.33 TCGA-HC-A9TH-01 14 31576284 31576284 G C HECTD1 Missense_Mutation p.P2265R 0.25 deleterious(0) probably_damaging(0.998) TCGA-HC-A9TH-01 15 45457064 45457064 C T DUOX1 Missense_Mutation p.R1541W 0.37 deleterious(0.01) benign(0.01) TCGA-HC-A9TH-01 16 67963908 67963908 G A CTRL Missense_Mutation p.R242C 0.27 tolerated(0.07) benign(0.022) TCGA-HC-A9TH-01 17 48216860 48216860 C T PPP1R9B Silent p.A649A 0.31 TCGA-HC-A9TH-01 17 7578525 7578525 G C TP53 Missense_Mutation p.C135W 0.41 deleterious(0) probably_damaging(1) TCGA-HC-A9TH-01 19 11240197 11240197 G A LDLR Missense_Mutation p.V800I 0.08 tolerated(0.23) benign(0.001) TCGA-HC-A9TH-01 19 49692202 49692202 G C TRPM4 Splice_Site p.X625_splice 0.25 TCGA-HC-A9TH-01 19 51165488 51165488 G A SHANK1 Missense_Mutation p.R2074C 0.29 unknown(0) TCGA-HC-A9TH-01 19 51361552 51361552 C G KLK3 Silent p.G158G 0.40 TCGA-HC-A9TH-01 1 10720467 10720467 G - CASZ1 Frame_Shift_Del p.A211Gfs*96 0.16 TCGA-HC-A9TH-01 1 156811518 156811518 C T INSRR Missense_Mutation p.V1156M 0.33 deleterious(0) probably_damaging(0.988) TCGA-HC-A9TH-01 1 23111124 23111124 G T EPHB2 Silent p.S122S 0.38 TCGA-HC-A9TH-01 1 240370979 240370979 C T FMN2 Missense_Mutation p.P956L 0.39 unknown(0) TCGA-HC-A9TH-01 1 25254068 25254068 G T RUNX3 Silent p.R160R 0.36 TCGA-HC-A9TH-01 1 85029048 85029048 G A CTBS Silent p.D283D 0.48 TCGA-HC-A9TH-01 20 48479505 48479505 C G SLC9A8 Silent p.V267V 0.26 TCGA-HC-A9TH-01 21 45475738 45475738 G C TRAPPC10 Missense_Mutation p.E214D 0.37 tolerated(0.16) possibly_damaging(0.542) TCGA-HC-A9TH-01 21 46047205 46047205 G A KRTAP10-9 Silent p.P39P 0.21 TCGA-HC-A9TH-01 22 41911452 41911452 C T ACO2 Silent p.G199G 0.33 TCGA-HC-A9TH-01 2 136567459 136567459 C T LCT Missense_Mutation p.V820I 0.06 deleterious(0.03) benign(0.325) TCGA-HC-A9TH-01 2 168105160 168105160 C A XIRP2 Missense_Mutation p.P2420T 0.22 probably_damaging(0.987) TCGA-HC-A9TH-01 2 179640923 179640923 G A TTN Missense_Mutation p.R1890C 0.30 TCGA-HC-A9TH-01 2 212295693 212295693 C T ERBB4 Missense_Mutation p.E874K 0.37 tolerated(0.06) possibly_damaging(0.621) TCGA-HC-A9TH-01 3 151166465 151166465 G T IGSF10 Missense_Mutation p.S435Y 0.18 deleterious(0) possibly_damaging(0.464) TCGA-HC-A9TH-01 3 16358450 16358450 G A RFTN1 Missense_Mutation p.A541V 0.04 tolerated_low_confidence(0.06) benign(0.14) TCGA-HC-A9TH-01 3 169644361 169644361 C T SAMD7 Missense_Mutation p.A104V 0.08 deleterious(0) benign(0.412) TCGA-HC-A9TH-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.29 tolerated(0.11) possibly_damaging(0.529) TCGA-HC-A9TH-01 3 194080647 194080647 G A LRRC15 Missense_Mutation p.R382C 0.24 tolerated(0.16) possibly_damaging(0.828) TCGA-HC-A9TH-01 4 154709579 154709579 G A SFRP2 Missense_Mutation p.P137S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A9TH-01 4 22390728 22390728 A T GPR125 Missense_Mutation p.S902R 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A9TH-01 4 38798378 38798378 T G TLR1 Missense_Mutation p.K692T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-HC-A9TH-01 4 55141137 55141137 C T PDGFRA Missense_Mutation p.L595F 0.28 deleterious(0) probably_damaging(0.999) TCGA-HC-A9TH-01 4 55971085 55971085 C T KDR Missense_Mutation p.C571Y 0.25 deleterious(0) probably_damaging(1) TCGA-HC-A9TH-01 4 69203566 69203566 C - YTHDC1 Frame_Shift_Del p.K61Nfs*14 0.25 TCGA-HC-A9TH-01 4 7056396 7056396 G A TADA2B Missense_Mutation p.R293Q 0.25 deleterious(0.01) benign(0.154) TCGA-HC-A9TH-01 5 140188233 140188233 C T PCDHA4 Silent p.N487N 0.12 TCGA-HC-A9TH-01 5 140188443 140188443 C T PCDHA4 Silent p.D557D 0.44 TCGA-HC-A9TH-01 6 170893398 170893398 G A PDCD2 Missense_Mutation p.A91V 0.07 tolerated(0.1) benign(0.004) TCGA-HC-A9TH-01 7 30054372 30054372 T C FKBP14 Silent p.T205T 0.35 TCGA-HC-A9TH-01 9 120475154 120475154 C T TLR4 Silent p.L250L 0.26 TCGA-HC-A9TH-01 9 124094713 124094713 T A GSN Silent p.A727A 0.32 TCGA-HC-A9TH-01 9 130494342 130494342 C T TOR2A Missense_Mutation p.V313M 0.51 deleterious(0) probably_damaging(0.999) TCGA-HC-A9TH-01 9 136594963 136594963 C T SARDH Missense_Mutation p.R280Q 0.11 tolerated(0.59) benign(0.004) TCGA-HC-A9TH-01 9 136594988 136594988 C T SARDH Splice_Site p.X272_splice 0.16 TCGA-HC-A9TH-01 9 136595289 136595289 C T SARDH Silent p.V237V 0.09 TCGA-HC-A9TH-01 9 136596528 136596528 C G SARDH Missense_Mutation p.D197H 0.13 deleterious(0.01) probably_damaging(0.918) TCGA-HC-A9TH-01 9 136597691 136597691 C A SARDH Nonsense_Mutation p.E122* 0.11 TCGA-HC-A9TH-01 9 140943691 140943691 G A CACNA1B Missense_Mutation p.G1212R 0.06 deleterious(0) probably_damaging(0.996) TCGA-HC-A9TH-01 9 2718996 2718996 C T KCNV2 Silent p.A419A 0.30 TCGA-HI-7168-01 10 15255871 15255871 G A FAM171A1 Silent p.S572S 0.36 TCGA-HI-7168-01 10 38343826 38343826 T C ZNF33A Silent p.D258D 0.14 TCGA-HI-7168-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.28 tolerated(0.07) benign(0.069) TCGA-HI-7168-01 11 55579666 55579666 G T OR5L1 Missense_Mutation p.A242S 0.18 deleterious(0.02) probably_damaging(0.96) TCGA-HI-7168-01 12 64017904 64017904 C T DPY19L2 Missense_Mutation p.R290H 0.07 deleterious(0) probably_damaging(0.999) TCGA-HI-7168-01 13 102029302 102029302 C G NALCN Missense_Mutation p.E161Q 0.15 tolerated(0.58) benign(0.055) TCGA-HI-7168-01 13 39433450 39433450 C T FREM2 Silent p.Y2414Y 0.13 TCGA-HI-7168-01 14 78205374 78205374 G A SNW1 Missense_Mutation p.P121S 0.08 deleterious(0.02) benign(0.103) TCGA-HI-7168-01 15 25423748 25423748 G T SNORD115-6 5'Flank 0.49 TCGA-HI-7168-01 15 41229089 41229089 A C DLL4 Missense_Mutation p.D635A 0.71 tolerated(0.07) benign(0.119) TCGA-HI-7168-01 15 49800527 49800527 C A FAM227B Missense_Mutation p.G298V 0.39 tolerated(0.24) possibly_damaging(0.861) TCGA-HI-7168-01 16 1556317 1556317 C T TELO2 Nonsense_Mutation p.Q705* 0.11 TCGA-HI-7168-01 16 19089458 19089458 T C COQ7 Missense_Mutation p.I211T 0.14 deleterious(0) probably_damaging(0.956) TCGA-HI-7168-01 16 23080883 23080883 G A USP31 Missense_Mutation p.S848F 0.15 deleterious(0.03) possibly_damaging(0.866) TCGA-HI-7168-01 16 23364121 23364121 G T SCNN1B Splice_Site p.X104_splice 0.08 TCGA-HI-7168-01 16 2569823 2569823 C T RP11-20I23.1 3'UTR 0.33 TCGA-HI-7168-01 16 3019808 3019808 C G PAQR4 Missense_Mutation p.L45V 0.07 tolerated(0.19) benign(0.028) TCGA-HI-7168-01 16 3021853 3021853 C T PAQR4 Silent p.I242I 0.15 TCGA-HI-7168-01 16 818814 818814 C T MSLN 3'UTR 0.43 TCGA-HI-7168-01 17 42030195 42030195 G A PYY 3'UTR 0.25 TCGA-HI-7168-01 17 42455141 42455141 G T ITGA2B Silent p.I704I 0.13 TCGA-HI-7168-01 17 56291167 56291167 G C MKS1 Missense_Mutation p.I236M 0.42 tolerated(0.08) benign(0.184) TCGA-HI-7168-01 17 64683317 64683317 T A PRKCA Missense_Mutation p.N206K 0.33 tolerated(0.25) benign(0.023) TCGA-HI-7168-01 17 67300814 67300814 G A ABCA5 Missense_Mutation p.S309L 0.12 deleterious(0) possibly_damaging(0.895) TCGA-HI-7168-01 17 67300891 67300891 G C ABCA5 Silent p.V283V 0.15 TCGA-HI-7168-01 17 67309242 67309242 G C ABCA5 Missense_Mutation p.L100V 0.10 tolerated(1) benign(0.309) TCGA-HI-7168-01 17 67309305 67309305 G C ABCA5 Missense_Mutation p.L79V 0.09 tolerated(0.42) benign(0.086) TCGA-HI-7168-01 17 72741156 72741156 G A RAB37 Missense_Mutation p.V172I 0.11 tolerated(0.56) benign(0.173) TCGA-HI-7168-01 18 3102500 3102500 G A MYOM1 Nonsense_Mutation p.R1183* 0.06 TCGA-HI-7168-01 18 6896512 6896512 G T ARHGAP28 Silent p.P480P 0.12 TCGA-HI-7168-01 19 15586948 15586948 G T PGLYRP2 Missense_Mutation p.P178Q 0.05 deleterious_low_confidence(0.05) possibly_damaging(0.786) TCGA-HI-7168-01 19 18377363 18377363 T C KIAA1683 Missense_Mutation p.I329M 0.44 tolerated(0.24) benign(0.143) TCGA-HI-7168-01 19 49207194 49207194 G T FUT2 Silent p.L327L 0.15 TCGA-HI-7168-01 19 49633700 49633700 C T PPFIA3 Silent p.A241A 0.27 TCGA-HI-7168-01 1 158639553 158639553 T C SPTA1 Silent p.K541K 0.38 TCGA-HI-7168-01 20 5931051 5931051 T A TRMT6 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) benign(0.035) TCGA-HI-7168-01 2 100055181 100055181 C T REV1 Silent p.K365K 0.11 TCGA-HI-7168-01 2 10929048 10929048 A T PDIA6 Silent p.A300A 0.38 TCGA-HI-7168-01 2 238726721 238726721 G T RBM44 Missense_Mutation p.D388Y 0.23 deleterious(0) probably_damaging(0.971) TCGA-HI-7168-01 2 71058862 71058862 T C CD207 Missense_Mutation p.D269G 0.52 tolerated(1) benign(0.006) TCGA-HI-7168-01 2 74166089 74166089 G T DGUOK Missense_Mutation p.W65C 0.06 deleterious(0.02) probably_damaging(1) TCGA-HI-7168-01 3 62648047 62648047 G T CADPS Missense_Mutation p.A304E 0.12 deleterious(0) possibly_damaging(0.587) TCGA-HI-7168-01 3 89457246 89457246 C A EPHA3 Missense_Mutation p.A576E 0.13 tolerated(0.52) benign(0.015) TCGA-HI-7168-01 4 103720584 103720584 G T UBE2D3 Silent p.I128I 0.18 TCGA-HI-7168-01 4 104030222 104030222 C A CENPE Missense_Mutation p.E2583D 0.06 probably_damaging(0.957) TCGA-HI-7168-01 4 26491054 26491054 G A CCKAR Silent p.S55S 0.27 TCGA-HI-7168-01 4 81123531 81123531 C A PRDM8 Silent p.I305I 0.20 TCGA-HI-7168-01 5 172560800 172560800 C T CREBRF 3'UTR 0.25 TCGA-HI-7168-01 5 180048621 180048621 G A FLT4 Silent p.H647H 0.33 TCGA-HI-7168-01 6 132722436 132722436 G A MOXD1 Missense_Mutation p.R44W 0.16 deleterious(0.01) possibly_damaging(0.806) TCGA-HI-7168-01 6 136582162 136582162 G A BCLAF1 3'UTR 0.07 TCGA-HI-7168-01 6 157150545 157150545 C T ARID1B Missense_Mutation p.P576L 0.08 probably_damaging(0.999) TCGA-HI-7168-01 6 157150550 157150550 C T ARID1B Nonsense_Mutation p.Q578* 0.08 TCGA-HI-7168-01 6 32036414 32036414 C T TNXB Silent p.G1991G 0.08 TCGA-HI-7168-01 6 9933495 9933495 T A OFCC1 Missense_Mutation p.K20M 0.17 deleterious(0) probably_damaging(0.994) TCGA-HI-7168-01 7 137294314 137294314 G T DGKI Missense_Mutation p.S345R 0.16 tolerated(0.08) probably_damaging(0.997) TCGA-HI-7168-01 7 151684285 151684285 C T GALNTL5 Missense_Mutation p.R193W 0.23 tolerated(0.07) probably_damaging(1) TCGA-HI-7168-01 7 155301750 155301750 C A CNPY1 5'UTR 0.27 TCGA-HI-7168-01 7 22985646 22985646 A G FAM126A Silent p.S376S 0.33 TCGA-HI-7168-01 7 90014223 90014224 - A GTPBP10 Frame_Shift_Ins p.N309Kfs*37 0.25 TCGA-HI-7168-01 8 26239000 26239000 G C BNIP3L 5'Flank 0.25 TCGA-HI-7168-01 8 57080907 57080907 C T PLAG1 5'UTR 0.35 TCGA-HI-7168-01 9 111617151 111617151 G A ACTL7B Missense_Mutation p.R354C 0.30 deleterious(0.01) benign(0.044) TCGA-HI-7168-01 9 138011425 138011425 G A OLFM1 Missense_Mutation p.D269N 0.34 tolerated(0.3) probably_damaging(0.945) TCGA-HI-7168-01 9 27949700 27949700 G A LINGO2 Missense_Mutation p.R324C 0.23 deleterious(0) possibly_damaging(0.774) TCGA-HI-7169-01 10 71264232 71264232 C T TSPAN15 Silent p.I203I 0.18 TCGA-HI-7169-01 11 124623669 124623669 G A ESAM Missense_Mutation p.T349M 0.16 tolerated(0.07) benign(0.004) TCGA-HI-7169-01 11 59189732 59189732 G T OR5A2 Missense_Mutation p.A232D 0.09 deleterious(0.02) possibly_damaging(0.756) TCGA-HI-7169-01 11 92531778 92531778 G A FAT3 Missense_Mutation p.V1867I 0.15 benign(0.228) TCGA-HI-7169-01 12 56365358 56365358 T C CDK2 Silent p.A282A 0.23 TCGA-HI-7169-01 12 62902191 62902191 A G MON2 Silent p.P305P 0.29 TCGA-HI-7169-01 12 7802204 7802204 G A APOBEC1 Missense_Mutation p.T217M 0.04 tolerated_low_confidence(0.85) benign(0.001) TCGA-HI-7169-01 14 21463007 21463007 G T METTL17 Missense_Mutation p.A275S 0.10 tolerated(0.34) benign(0.053) TCGA-HI-7169-01 14 23559257 23559257 G C ACIN1 Missense_Mutation p.L182V 0.10 benign(0.079) TCGA-HI-7169-01 15 100533254 100533254 G A ADAMTS17 Missense_Mutation p.T983M 0.04 deleterious(0) possibly_damaging(0.649) TCGA-HI-7169-01 15 34129958 34129958 A G RYR3 Missense_Mutation p.D3926G 0.16 possibly_damaging(0.69) TCGA-HI-7169-01 16 70506485 70506485 A G FUK Silent p.E461E 0.19 TCGA-HI-7169-01 17 16842993 16842993 G A TNFRSF13B Silent p.T250T 0.07 TCGA-HI-7169-01 17 34247216 34247216 T C RDM1 Missense_Mutation p.E243G 0.06 deleterious(0.01) possibly_damaging(0.521) TCGA-HI-7169-01 17 39262078 39262078 G T KRTAP4-9 Missense_Mutation p.Q146H 0.09 tolerated(0.07) unknown(0) TCGA-HI-7169-01 17 695199 695199 G A RNMTL1 Missense_Mutation p.G385S 0.06 deleterious(0.03) probably_damaging(0.996) TCGA-HI-7169-01 19 6731108 6731108 G A GPR108 Silent p.G483G 0.06 TCGA-HI-7169-01 1 225591013 225591013 T C LBR Missense_Mutation p.I614V 0.07 tolerated(0.77) benign(0.024) TCGA-HI-7169-01 20 36488410 36488410 C T CTNNBL1 Missense_Mutation p.A501V 0.19 tolerated(0.69) benign(0) TCGA-HI-7169-01 20 9364983 9364983 C T PLCB4 Missense_Mutation p.T330I 0.19 deleterious(0) probably_damaging(0.999) TCGA-HI-7169-01 22 46760120 46760120 C T CELSR1 Silent p.P2936P 0.06 TCGA-HI-7169-01 2 179402560 179402560 A G TTN Missense_Mutation p.V33125A 0.23 TCGA-HI-7169-01 2 216259362 216259362 G A FN1 Nonsense_Mutation p.Q1229* 0.04 TCGA-HI-7169-01 2 217724626 217724626 G A TNP1 Silent p.G44G 0.05 TCGA-HI-7169-01 2 222301119 222301119 C T EPHA4 Silent p.R782R 0.05 TCGA-HI-7169-01 2 242142854 242142854 C T ANO7 Missense_Mutation p.P331L 0.33 deleterious(0) probably_damaging(1) TCGA-HI-7169-01 2 27599549 27599549 A G SNX17 Missense_Mutation p.N459S 0.18 deleterious(0) possibly_damaging(0.831) TCGA-HI-7169-01 2 98382597 98382597 G - TMEM131 Frame_Shift_Del p.P1568Qfs*26 0.26 TCGA-HI-7169-01 3 119133914 119133914 A C ARHGAP31 Silent p.L1046L 0.25 TCGA-HI-7169-01 3 155199080 155199080 G A PLCH1 Missense_Mutation p.R1587C 0.07 deleterious(0) probably_damaging(1) TCGA-HI-7169-01 3 23934708 23934708 C T NKIRAS1 Missense_Mutation p.D153N 0.13 tolerated(0.33) benign(0.173) TCGA-HI-7169-01 3 97194208 97194208 C G EPHA6 Missense_Mutation p.A636G 0.07 tolerated(0.17) possibly_damaging(0.844) TCGA-HI-7169-01 4 114214649 114214649 C T ANK2 Silent p.V810V 0.09 TCGA-HI-7169-01 5 140729950 140729950 C T PCDHGB1 Silent p.N41N 0.22 TCGA-HI-7169-01 5 38945049 38945049 T G RICTOR Silent p.S1585S 0.21 TCGA-HI-7169-01 6 116837218 116837218 C A FAM26E 3'UTR 0.06 TCGA-HI-7169-01 6 26045693 26045693 A C HIST1H3C Missense_Mutation p.K19Q 0.10 deleterious_low_confidence(0.01) benign(0.012) TCGA-HI-7169-01 6 43484884 43484884 C G POLR1C Missense_Mutation p.R13G 0.06 deleterious(0.01) benign(0.43) TCGA-HI-7169-01 7 105641939 105641939 C T CDHR3 Silent p.L249L 0.05 TCGA-HI-7169-01 8 76463690 76463690 C T HNF4G Silent p.S140S 0.09 TCGA-HI-7169-01 8 92090653 92090653 G A OTUD6B Missense_Mutation p.G159R 0.20 deleterious(0.01) probably_damaging(1) TCGA-HI-7169-01 9 80022520 80022520 C A VPS13A Silent p.A3157A 0.08 TCGA-HI-7169-01 X 125298898 125298898 C T DCAF12L2 Missense_Mutation p.R337H 0.74 tolerated(0.56) benign(0.001) TCGA-HI-7169-01 X 77225016 77225016 G A PGAM4 Silent p.R40R 0.08 TCGA-HI-7169-01 Y 14922614 14922614 C A USP9Y Missense_Mutation p.A1367E 0.21 deleterious(0.01) possibly_damaging(0.652) TCGA-HI-7170-01 10 128019054 128019054 C G ADAM12 Missense_Mutation p.R38T 0.18 tolerated_low_confidence(0.55) benign(0.038) TCGA-HI-7170-01 10 95849072 95849072 A T PLCE1 Intron 0.07 TCGA-HI-7170-01 11 61196740 61196740 T C CPSF7 Missense_Mutation p.I33V 0.22 tolerated_low_confidence(0.77) unknown(0) TCGA-HI-7170-01 11 93465281 93465281 C T KIAA1731 3'Flank 0.19 TCGA-HI-7170-01 12 49399105 49399105 T C PRKAG1 Missense_Mutation p.Y107C 0.24 deleterious(0) possibly_damaging(0.759) TCGA-HI-7170-01 12 49437439 49437440 - A KMT2D Frame_Shift_Ins p.E1816* 0.20 TCGA-HI-7170-01 13 29242675 29242675 G A POMP Silent p.P76P 0.21 TCGA-HI-7170-01 14 21790127 21790127 G T RPGRIP1 Nonsense_Mutation p.E576* 0.16 TCGA-HI-7170-01 14 24884617 24884617 G A NYNRIN Missense_Mutation p.R1221H 0.08 tolerated(0.14) benign(0.022) TCGA-HI-7170-01 16 89349914 89349916 CTT - ANKRD11 In_Frame_Del p.K1012del 0.23 TCGA-HI-7170-01 17 12847399 12847399 G A ARHGAP44 Silent p.E249E 0.19 TCGA-HI-7170-01 1 15892459 15892459 C G DNAJC16 Missense_Mutation p.F548L 0.22 tolerated(0.15) probably_damaging(0.998) TCGA-HI-7170-01 1 8418694 8418694 C T RERE Missense_Mutation p.E1301K 0.08 unknown(0) TCGA-HI-7170-01 20 3766889 3766889 A T CENPB Missense_Mutation p.L81H 0.31 deleterious(0) unknown(0) TCGA-HI-7170-01 2 112702569 112702569 C A MERTK Nonsense_Mutation p.S172* 0.23 TCGA-HI-7170-01 2 90193209 90193209 C T IGKV1D-13 Missense_Mutation p.R46W 0.15 deleterious(0.04) benign(0.067) TCGA-HI-7170-01 3 13438886 13438886 T C NUP210 Missense_Mutation p.E136G 0.32 deleterious(0) benign(0.424) TCGA-HI-7170-01 3 184298196 184298196 G A EPHB3 Missense_Mutation p.D727N 0.12 deleterious(0) possibly_damaging(0.831) TCGA-HI-7170-01 3 196613054 196613072 GGGCAAGGAGCTTAGTTTA - SENP5 Frame_Shift_Del p.G335Tfs*31 0.23 TCGA-HI-7170-01 3 48623134 48623134 G T COL7A1 Missense_Mutation p.P1274T 0.30 unknown(0) TCGA-HI-7170-01 4 177058695 177058695 G A WDR17 Missense_Mutation p.G455E 0.21 deleterious(0) benign(0.056) TCGA-HI-7170-01 4 183675933 183675933 C T TENM3 Silent p.L1471L 0.24 TCGA-HI-7170-01 4 52944970 52944970 T A SPATA18 Missense_Mutation p.S364T 0.05 tolerated(0.32) benign(0.002) TCGA-HI-7170-01 4 70066349 70066349 C A UGT2B11 Missense_Mutation p.V467F 0.21 deleterious(0) probably_damaging(1) TCGA-HI-7170-01 4 84368107 84368107 T C HELQ Missense_Mutation p.T425A 0.20 tolerated(0.11) benign(0.027) TCGA-HI-7170-01 5 153765900 153765900 C T GALNT10 Silent p.F322F 0.23 TCGA-HI-7170-01 6 123539730 123539730 G T TRDN 3'UTR 0.24 TCGA-HI-7170-01 7 107790341 107790342 AA - NRCAM 3'UTR 0.14 TCGA-HI-7170-01 7 141490469 141490469 A G TAS2R5 Missense_Mutation p.Y103C 0.24 deleterious(0) probably_damaging(1) TCGA-HI-7170-01 7 155255151 155255151 G A EN2 Silent p.Q257Q 0.20 TCGA-HI-7170-01 8 125527986 125527986 C A TATDN1 Splice_Site p.X130_splice 0.11 TCGA-HI-7170-01 9 104086314 104086314 C A LPPR1 Missense_Mutation p.S318Y 0.07 deleterious(0.04) probably_damaging(0.986) TCGA-HI-7170-01 X 134988581 134988581 A C SAGE1 Missense_Mutation p.T203P 0.30 deleterious(0) probably_damaging(0.961) TCGA-HI-7170-01 X 15809137 15809137 G T ZRSR2 Splice_Site p.X41_splice 0.32 TCGA-HI-7171-01 10 134599343 134599343 G A NKX6-2 Missense_Mutation p.P37L 0.10 deleterious(0) benign(0.262) TCGA-HI-7171-01 10 52595833 52595833 C A A1CF Splice_Site p.X210_splice 0.36 TCGA-HI-7171-01 11 407863 407863 G A SIGIRR Silent p.N145N 0.14 TCGA-HI-7171-01 11 4945119 4945119 C A OR51G1 Missense_Mutation p.V151L 0.49 tolerated(0.54) benign(0.012) TCGA-HI-7171-01 11 62289690 62289690 T A AHNAK Nonsense_Mutation p.K4067* 0.10 TCGA-HI-7171-01 11 94924639 94924639 G A SESN3 Missense_Mutation p.R91W 0.39 deleterious(0) benign(0.083) TCGA-HI-7171-01 12 103352358 103352358 G A ASCL1 Silent p.L112L 0.25 TCGA-HI-7171-01 12 121434123 121434123 C T HNF1A Silent p.G338G 0.20 TCGA-HI-7171-01 12 124241431 124241431 T G ATP6V0A2 Missense_Mutation p.L788W 0.07 deleterious(0) probably_damaging(0.968) TCGA-HI-7171-01 12 55820867 55820867 C G OR6C76 Missense_Mutation p.S277C 0.44 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-HI-7171-01 12 81110950 81110950 G T MYF5 Silent p.V36V 0.40 TCGA-HI-7171-01 14 24040359 24040359 G A JPH4 Silent p.D527D 0.31 TCGA-HI-7171-01 14 51132328 51132328 G A SAV1 Missense_Mutation p.P35L 0.24 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-HI-7171-01 15 64386001 64386001 A G FAM96A 5'UTR 0.41 TCGA-HI-7171-01 15 75594869 75594869 C T DNM1P34 RNA 0.10 TCGA-HI-7171-01 15 79748639 79748639 C G KIAA1024 Silent p.L50L 0.45 TCGA-HI-7171-01 16 66770148 66770148 C T DYNC1LI2 Splice_Site p.X177_splice 0.83 TCGA-HI-7171-01 17 21319343 21319343 C T KCNJ12 Missense_Mutation p.A230V 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-HI-7171-01 17 3181633 3181633 G A OR3A2 Silent p.S199S 0.24 TCGA-HI-7171-01 17 35745662 35745662 T A C17orf78 Missense_Mutation p.I189N 0.48 deleterious(0) probably_damaging(0.998) TCGA-HI-7171-01 17 7577566 7577566 T C TP53 Missense_Mutation p.N239D 0.45 deleterious(0) probably_damaging(1) TCGA-HI-7171-01 18 25572675 25572675 G A CDH2 Missense_Mutation p.R430W 0.40 deleterious(0.02) probably_damaging(0.984) TCGA-HI-7171-01 18 25583091 25583091 G T CDH2 Missense_Mutation p.P297H 0.04 deleterious(0.01) probably_damaging(0.989) TCGA-HI-7171-01 19 438989 438989 C T SHC2 Missense_Mutation p.R194Q 0.37 deleterious(0.02) probably_damaging(0.961) TCGA-HI-7171-01 19 50162974 50162974 G A IRF3 Nonsense_Mutation p.R411* 0.42 TCGA-HI-7171-01 1 120906148 120906148 G T RP11-439A17.4 5'Flank 0.45 TCGA-HI-7171-01 1 14925607 14925607 G A KAZN Silent p.A38A 0.08 TCGA-HI-7171-01 1 152538501 152538501 G A LCE3E Nonsense_Mutation p.R62* 0.08 TCGA-HI-7171-01 1 169696555 169696555 T C SELE Missense_Mutation p.N527S 0.09 tolerated(0.21) possibly_damaging(0.53) TCGA-HI-7171-01 1 228345673 228345673 G A GJC2 Missense_Mutation p.A72T 0.18 deleterious(0) probably_damaging(0.997) TCGA-HI-7171-01 22 37622732 37622732 C T RAC2 Missense_Mutation p.R187H 0.32 tolerated_low_confidence(0.06) benign(0.015) TCGA-HI-7171-01 2 218673380 218673380 C T TNS1 Missense_Mutation p.R1659H 0.16 deleterious(0) probably_damaging(0.999) TCGA-HI-7171-01 2 70408850 70408850 C T C2orf42 Missense_Mutation p.V90M 0.08 deleterious(0) probably_damaging(0.982) TCGA-HI-7171-01 3 21462847 21462847 C A ZNF385D Silent p.V349V 0.19 TCGA-HI-7171-01 5 106723460 106723460 G A EFNA5 Missense_Mutation p.P144L 0.15 tolerated(0.08) benign(0.031) TCGA-HI-7171-01 5 35871289 35871289 C A IL7R Missense_Mutation p.Q171K 0.11 tolerated(0.09) benign(0.023) TCGA-HI-7171-01 6 42713803 42713803 G A TBCC Silent p.S3S 0.32 TCGA-HI-7171-01 7 31378577 31378577 G A NEUROD6 Silent p.R102R 0.09 TCGA-HI-7171-01 7 48266917 48266917 C T ABCA13 Missense_Mutation p.P176L 0.11 possibly_damaging(0.845) TCGA-HI-7171-01 7 96303055 96303055 T A SHFM1 3'UTR 0.41 TCGA-HI-7171-01 8 139890301 139890301 G A COL22A1 Missense_Mutation p.T117M 0.56 unknown(0) TCGA-HI-7171-01 8 70981761 70981761 G A PRDM14 Missense_Mutation p.P112L 0.58 tolerated(0.15) benign(0.007) TCGA-HI-7171-01 X 114082718 114082718 C T HTR2C Missense_Mutation p.R168W 0.77 deleterious(0.02) possibly_damaging(0.586) TCGA-HI-7171-01 X 152037459 152037459 A G NSDHL Silent p.L307L 0.89 TCGA-J4-8198-01 11 102248361 102248361 C G BIRC2 Missense_Mutation p.Q501E 0.38 tolerated(0.1) possibly_damaging(0.617) TCGA-J4-8198-01 11 36597064 36597064 G A RAG1 Missense_Mutation p.R737H 0.32 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-J4-8198-01 11 74303721 74303721 T G POLD3 Nonsense_Mutation p.Y6* 0.48 TCGA-J4-8198-01 14 96730362 96730362 G C BDKRB1 Missense_Mutation p.G115R 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-J4-8198-01 15 74467265 74467265 C T ISLR Silent p.P22P 0.27 TCGA-J4-8198-01 17 18023607 18023607 C T MYO15A Missense_Mutation p.P498L 0.32 possibly_damaging(0.713) TCGA-J4-8198-01 17 38907252 38907252 C T KRT25 Missense_Mutation p.R304H 0.11 deleterious(0.02) probably_damaging(1) TCGA-J4-8198-01 17 60060259 60060259 T A MED13 Missense_Mutation p.K1035N 0.29 deleterious(0) probably_damaging(0.997) TCGA-J4-8198-01 18 43666432 43666432 T C ATP5A1 Missense_Mutation p.K402R 0.34 tolerated_low_confidence(0.17) benign(0.097) TCGA-J4-8198-01 18 5416266 5416266 G T EPB41L3 Missense_Mutation p.P540T 0.25 tolerated_low_confidence(0.56) benign(0.01) TCGA-J4-8198-01 18 8826176 8826176 T C SOGA2 Silent p.G1556G 0.16 TCGA-J4-8198-01 19 12126896 12126896 T C ZNF433 Silent p.A262A 0.29 TCGA-J4-8198-01 19 14581428 14581428 C A PKN1 Missense_Mutation p.S832R 0.14 deleterious(0.02) probably_damaging(0.979) TCGA-J4-8198-01 19 16620545 16620545 A G C19orf44 Missense_Mutation p.N462S 0.37 tolerated(1) benign(0.002) TCGA-J4-8198-01 19 46303813 46303813 G A RSPH6A Missense_Mutation p.H603Y 0.23 deleterious(0.01) benign(0.433) TCGA-J4-8198-01 19 53887191 53887191 T A ZNF525 3'UTR 0.33 TCGA-J4-8198-01 19 54314362 54314362 G A NLRP12 Missense_Mutation p.A184V 0.23 tolerated(0.05) benign(0.382) TCGA-J4-8198-01 1 156851396 156851396 G T NTRK1 Missense_Mutation p.A785S 0.13 tolerated(0.06) benign(0.248) TCGA-J4-8198-01 1 220273972 220273972 T C IARS2 Silent p.A177A 0.39 TCGA-J4-8198-01 1 240371422 240371422 G A FMN2 Missense_Mutation p.G1104R 0.20 unknown(0) TCGA-J4-8198-01 22 50354986 50354986 G T PIM3 Silent p.V72V 0.10 TCGA-J4-8198-01 2 125547651 125547651 G A CNTNAP5 Silent p.V974V 0.42 TCGA-J4-8198-01 2 152322042 152322042 A C RIF1 Missense_Mutation p.N2003T 0.28 deleterious_low_confidence(0.04) benign(0.013) TCGA-J4-8198-01 2 44547502 44547502 C G SLC3A1 Missense_Mutation p.I594M 0.22 tolerated(0.38) benign(0.012) TCGA-J4-8198-01 3 33686339 33686339 A G CLASP2 Missense_Mutation p.S258P 0.20 tolerated(0.27) possibly_damaging(0.597) TCGA-J4-8198-01 4 3949896 3949896 C T FAM86EP RNA 0.19 TCGA-J4-8198-01 4 84375053 84375060 TAAAGCTA - HELQ Frame_Shift_Del p.S113* 0.16 TCGA-J4-8198-01 5 164028104 164028104 G A CTC-340A15.2 RNA 0.20 TCGA-J4-8198-01 5 41154017 41154017 C T C6 Missense_Mutation p.E729K 0.24 tolerated(0.81) benign(0.026) TCGA-J4-8198-01 6 112480078 112480078 G A LAMA4 Missense_Mutation p.A558V 0.21 tolerated(0.96) benign(0.009) TCGA-J4-8198-01 6 40360553 40360553 G A LRFN2 Missense_Mutation p.T500M 0.30 deleterious(0) probably_damaging(0.998) TCGA-J4-8198-01 8 30437879 30437879 A C GTF2E2 Missense_Mutation p.D226E 0.31 tolerated(0.38) benign(0.054) TCGA-J4-8198-01 8 98657100 98657100 G A MTDH Silent p.L122L 0.25 TCGA-J4-8198-01 X 107840680 107840680 C A COL4A5 Missense_Mutation p.P554Q 0.11 unknown(0) TCGA-J4-8200-01 10 27381415 27381415 T A ANKRD26 Silent p.A186A 0.21 TCGA-J4-8200-01 11 113683079 113683079 T GAAA USP28 In_Frame_Ins p.E630_R631insF 0.09 TCGA-J4-8200-01 11 27077078 27077078 T A BBOX1 Nonsense_Mutation p.L34* 0.22 TCGA-J4-8200-01 12 111885274 111885274 G A SH2B3 Missense_Mutation p.V388M 0.19 deleterious(0) probably_damaging(0.956) TCGA-J4-8200-01 12 112632752 112632752 G A HECTD4 Missense_Mutation p.R2750W 0.22 probably_damaging(0.989) TCGA-J4-8200-01 14 105518068 105518068 T A GPR132 Missense_Mutation p.I136F 0.12 deleterious(0) probably_damaging(0.988) TCGA-J4-8200-01 14 52936858 52936858 C G TXNDC16 Silent p.S505S 0.11 TCGA-J4-8200-01 17 33679579 33679579 C A SLFN11 Missense_Mutation p.R834S 0.05 tolerated(0.16) benign(0.293) TCGA-J4-8200-01 17 37879658 37879658 G A ERBB2 Missense_Mutation p.R678Q 0.33 tolerated(0.19) benign(0.022) TCGA-J4-8200-01 19 44118391 44118391 G T ZNF428 Missense_Mutation p.D22E 0.16 tolerated_low_confidence(0.23) benign(0.063) TCGA-J4-8200-01 1 179526351 179526351 G A NPHS2 Silent p.D183D 0.26 TCGA-J4-8200-01 1 204170816 204170816 G A GOLT1A Missense_Mutation p.R81C 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-J4-8200-01 1 228437915 228437915 G A OBSCN Missense_Mutation p.R1520Q 0.05 possibly_damaging(0.468) TCGA-J4-8200-01 1 237608788 237608788 C T RYR2 Missense_Mutation p.R420W 0.25 possibly_damaging(0.854) TCGA-J4-8200-01 1 68512452 68512452 A C DIRAS3 Missense_Mutation p.F177V 0.11 deleterious(0) probably_damaging(0.996) TCGA-J4-8200-01 21 10862665 10862665 C T IGHV1OR21-1 Missense_Mutation p.A15V 0.07 deleterious(0.03) benign(0.045) TCGA-J4-8200-01 22 24837228 24837228 G A ADORA2A Missense_Mutation p.R337H 0.21 deleterious(0.05) possibly_damaging(0.875) TCGA-J4-8200-01 2 138413206 138413206 C A THSD7B Missense_Mutation p.Q1364K 0.16 tolerated(0.4) unknown(0) TCGA-J4-8200-01 3 1394066 1394066 G T CNTN6 Nonsense_Mutation p.G475* 0.13 TCGA-J4-8200-01 5 100222194 100222197 TTTA GTTTG ST8SIA4 Frame_Shift_Ins p.L118Pfs*6 0.14 TCGA-J4-8200-01 9 25678100 25678100 C A TUSC1 Nonsense_Mutation p.E74* 0.30 TCGA-J4-A67K-01 12 14804406 14804406 C G GUCY2C Missense_Mutation p.G549R 0.18 deleterious(0) probably_damaging(1) TCGA-J4-A67K-01 12 6657960 6657960 C T IFFO1 Missense_Mutation p.R371H 0.09 deleterious(0) probably_damaging(0.978) TCGA-J4-A67K-01 16 2161134 2161134 A C PKD1 Missense_Mutation p.V1345G 0.29 probably_damaging(0.99) TCGA-J4-A67K-01 16 68024898 68024898 C A DPEP2 Missense_Mutation p.K245N 0.29 tolerated(0.06) benign(0.208) TCGA-J4-A67K-01 17 48559551 48559551 G A RSAD1 Missense_Mutation p.V192M 0.35 tolerated(0.3) probably_damaging(0.984) TCGA-J4-A67K-01 18 28986327 28986327 C T DSG4 Silent p.L642L 0.20 TCGA-J4-A67K-01 19 14162942 14162942 C T IL27RA Missense_Mutation p.P584L 0.23 tolerated(0.12) benign(0.317) TCGA-J4-A67K-01 19 22951198 22951198 G A ZNF99 Silent p.I45I 0.34 TCGA-J4-A67K-01 19 49253917 49253917 C T FUT1 Missense_Mutation p.G208R 0.04 tolerated(0.06) benign(0.061) TCGA-J4-A67K-01 19 52520088 52520088 T C ZNF614 Missense_Mutation p.T255A 0.23 tolerated(0.13) benign(0) TCGA-J4-A67K-01 1 150938748 150938748 C T CERS2 Missense_Mutation p.R340H 0.28 deleterious(0) probably_damaging(0.997) TCGA-J4-A67K-01 1 36788016 36788016 C T EVA1B Silent p.E126E 0.21 TCGA-J4-A67K-01 20 19565661 19565661 C T SLC24A3 Missense_Mutation p.A157V 0.05 deleterious(0) probably_damaging(0.986) TCGA-J4-A67K-01 20 3785591 3785591 C T CDC25B Missense_Mutation p.R576W 0.08 deleterious(0) probably_damaging(1) TCGA-J4-A67K-01 22 38692447 38692447 T C CSNK1E Intron 0.36 TCGA-J4-A67K-01 22 46653656 46653656 C G PKDREJ Missense_Mutation p.G1855A 0.21 deleterious(0.01) probably_damaging(0.936) TCGA-J4-A67K-01 2 21232902 21232902 G A APOB Missense_Mutation p.H2280Y 0.29 benign(0.001) TCGA-J4-A67K-01 2 231988403 231988403 C G HTR2B Missense_Mutation p.V26L 0.07 tolerated_low_confidence(1) benign(0) TCGA-J4-A67K-01 2 239160327 239160327 C A PER2 Nonsense_Mutation p.E1063* 0.06 TCGA-J4-A67K-01 3 149563860 149563860 A G RNF13 Missense_Mutation p.Y16C 0.24 tolerated(0.07) benign(0.043) TCGA-J4-A67K-01 3 53852145 53852145 G - CHDH Frame_Shift_Del p.R482Efs*17 0.15 TCGA-J4-A67K-01 5 176778547 176778547 A - LMAN2 Frame_Shift_Del p.L35Ffs*8 0.16 TCGA-J4-A67K-01 5 37816139 37816139 C A GDNF Missense_Mutation p.A101S 0.11 tolerated(0.64) benign(0.027) TCGA-J4-A67K-01 6 105406094 105406094 G T LIN28B Missense_Mutation p.G44V 0.14 deleterious(0) probably_damaging(1) TCGA-J4-A67K-01 6 12124160 12124160 A G HIVEP1 Missense_Mutation p.M1378V 0.11 tolerated(0.31) benign(0.109) TCGA-J4-A67K-01 6 155572137 155572137 C A TIAM2 Missense_Mutation p.L1348I 0.24 tolerated(0.29) benign(0.002) TCGA-J4-A67K-01 6 3113516 3113516 C T RIPK1 Silent p.L653L 0.11 TCGA-J4-A67K-01 6 36887410 36887410 C T C6orf89 Silent p.L301L 0.10 TCGA-J4-A67K-01 7 100680909 100680909 C T MUC17 Missense_Mutation p.S2071F 0.28 unknown(0) TCGA-J4-A67K-01 7 54617801 54617801 G A VSTM2A Missense_Mutation p.R191Q 0.30 tolerated(0.12) benign(0.003) TCGA-J4-A67K-01 9 100675695 100675695 C T C9orf156 Missense_Mutation p.E133K 0.30 deleterious(0.01) possibly_damaging(0.836) TCGA-J4-A67K-01 9 116356367 116356367 C G RGS3 Intron 0.13 TCGA-J4-A67K-01 9 16436741 16436741 C T BNC2 Missense_Mutation p.R484Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-J4-A67K-01 9 77339421 77339421 G A TRPM6 3'UTR 0.15 TCGA-J4-A67L-01 11 72403811 72403811 C T ARAP1 Missense_Mutation p.G1325E 0.31 deleterious_low_confidence(0.05) possibly_damaging(0.78) TCGA-J4-A67L-01 12 22354692 22354692 C A ST8SIA1 Nonsense_Mutation p.E289* 0.19 TCGA-J4-A67L-01 14 106877737 106877737 T C IGHV4-39 Missense_Mutation p.Y86C 0.07 tolerated(0.12) possibly_damaging(0.556) TCGA-J4-A67L-01 14 79434627 79434627 G A NRXN3 Missense_Mutation p.R654H 0.23 deleterious(0) probably_damaging(0.91) TCGA-J4-A67L-01 15 35210531 35210531 T C AQR Missense_Mutation p.M424V 0.18 deleterious(0) benign(0.027) TCGA-J4-A67L-01 15 51028899 51028899 T C SPPL2A Missense_Mutation p.M258V 0.07 tolerated(0.33) benign(0.005) TCGA-J4-A67L-01 16 24567694 24567694 G C RBBP6 Missense_Mutation p.M200I 0.17 deleterious_low_confidence(0.03) benign(0.049) TCGA-J4-A67L-01 16 767073 767073 A G METRN Missense_Mutation p.I190V 0.37 tolerated(1) benign(0.006) TCGA-J4-A67L-01 16 88688650 88688650 G C ZC3H18 Silent p.P507P 0.12 TCGA-J4-A67L-01 16 88688651 88688651 C T ZC3H18 Nonsense_Mutation p.Q508* 0.12 TCGA-J4-A67L-01 17 65174992 65174992 G A HELZ Missense_Mutation p.R405C 0.11 deleterious(0.02) probably_damaging(0.985) TCGA-J4-A67L-01 17 7480262 7480262 T G EIF4A1 Intron 0.21 TCGA-J4-A67L-01 17 7577536 7577536 T C TP53 Missense_Mutation p.R249G 0.24 deleterious(0) probably_damaging(0.991) TCGA-J4-A67L-01 18 25565628 25565628 G A CDH2 Silent p.C613C 0.06 TCGA-J4-A67L-01 19 20002792 20002792 C T ZNF253 Missense_Mutation p.H246Y 0.10 deleterious(0.02) probably_damaging(1) TCGA-J4-A67L-01 19 52919156 52919156 A G ZNF528 Missense_Mutation p.K351E 0.19 deleterious(0) probably_damaging(0.98) TCGA-J4-A67L-01 19 56379186 56379186 C T NLRP4 Silent p.G766G 0.04 TCGA-J4-A67L-01 1 158325304 158325304 C T CD1E Silent p.C190C 0.25 TCGA-J4-A67L-01 1 167823646 167823646 A C ADCY10 Silent p.V751V 0.18 TCGA-J4-A67L-01 1 93646352 93646352 C G CCDC18 Missense_Mutation p.R25G 0.20 tolerated_low_confidence(0.06) benign(0) TCGA-J4-A67L-01 3 112538718 112538718 G A CD200R1L Missense_Mutation p.A235V 0.22 tolerated(0.57) benign(0.005) TCGA-J4-A67L-01 4 122723880 122723880 A C EXOSC9 Silent p.A71A 0.21 TCGA-J4-A67L-01 4 146823320 146823320 G C ZNF827 Nonsense_Mutation p.S364* 0.11 TCGA-J4-A67L-01 4 59355 59355 A T ZNF595 Missense_Mutation p.E12D 0.02 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-J4-A67L-01 4 62758468 62758468 G A LPHN3 Silent p.P457P 0.15 TCGA-J4-A67L-01 4 81123567 81123567 G A PRDM8 Silent p.P317P 0.21 TCGA-J4-A67L-01 5 140209377 140209377 G A PCDHA6 Silent p.A567A 0.17 TCGA-J4-A67L-01 5 176308519 176308519 C T HK3 Missense_Mutation p.R804Q 0.12 tolerated(0.59) possibly_damaging(0.737) TCGA-J4-A67L-01 6 144844318 144844318 G A UTRN Missense_Mutation p.R1967Q 0.21 tolerated(0.08) benign(0.006) TCGA-J4-A67L-01 7 126173392 126173392 T C GRM8 Missense_Mutation p.K682E 0.07 tolerated(0.16) probably_damaging(0.92) TCGA-J4-A67L-01 7 135300708 135300708 A G NUP205 Missense_Mutation p.T1119A 0.27 tolerated(0.27) benign(0.326) TCGA-J4-A67L-01 7 149509149 149509149 C T SSPO RNA 0.26 TCGA-J4-A67L-01 8 59490716 59490716 A T SDCBP Missense_Mutation p.K176M 0.24 deleterious(0) probably_damaging(0.928) TCGA-J4-A67L-01 9 114170878 114170878 G T KIAA0368 Silent p.L1053L 0.27 TCGA-J4-A67L-01 9 115805634 115805634 C T ZFP37 Missense_Mutation p.E422K 0.19 tolerated(0.34) possibly_damaging(0.646) TCGA-J4-A67L-01 9 130286023 130286023 A G FAM129B Missense_Mutation p.M175T 0.23 tolerated(0.45) benign(0.108) TCGA-J4-A67L-01 9 140468754 140468754 C G DPH7 Missense_Mutation p.R182S 0.19 tolerated(0.34) benign(0) TCGA-J4-A67M-01 10 12046639 12046639 C T UPF2 Missense_Mutation p.R465Q 0.09 tolerated(0.17) possibly_damaging(0.681) TCGA-J4-A67M-01 10 73053281 73053281 G A UNC5B Missense_Mutation p.R631H 0.09 deleterious(0) benign(0.291) TCGA-J4-A67M-01 11 18267020 18267020 C T SAA2 Silent p.A91A 0.19 TCGA-J4-A67M-01 12 10223969 10223969 A G CLEC1A Missense_Mutation p.L269P 0.14 deleterious(0) benign(0.338) TCGA-J4-A67M-01 12 124403289 124403289 C T DNAH10 Missense_Mutation p.R3649W 0.12 probably_damaging(0.962) TCGA-J4-A67M-01 12 80707349 80707349 G A OTOGL Missense_Mutation p.A1173T 0.05 deleterious(0) probably_damaging(0.988) TCGA-J4-A67M-01 14 20444014 20444014 C T OR4K15 Missense_Mutation p.R113C 0.13 tolerated(0.08) benign(0.002) TCGA-J4-A67M-01 14 94004514 94004514 G A UNC79 Silent p.T257T 0.15 TCGA-J4-A67M-01 15 31229359 31229359 A G FAN1 Missense_Mutation p.H985R 0.12 tolerated(0.11) benign(0.198) TCGA-J4-A67M-01 15 64365169 64365169 T C FAM96A Silent p.L148L 0.13 TCGA-J4-A67M-01 16 67261028 67261028 G A TMEM208 5'UTR 0.06 TCGA-J4-A67M-01 16 74955991 74955991 T C WDR59 Missense_Mutation p.N247S 0.05 tolerated(0.29) benign(0.01) TCGA-J4-A67M-01 17 43311099 43311099 G A FMNL1 Splice_Site p.X162_splice 0.08 TCGA-J4-A67M-01 18 2890715 2890715 C T EMILIN2 Missense_Mutation p.T197M 0.09 tolerated(0.09) benign(0.116) TCGA-J4-A67M-01 18 5406823 5406823 C T EPB41L3 Missense_Mutation p.A768T 0.11 tolerated(0.27) benign(0.005) TCGA-J4-A67M-01 19 53303676 53303677 TT - ZNF28 Frame_Shift_Del p.K474Sfs*9 0.10 TCGA-J4-A67M-01 1 159505651 159505651 G A OR10J5 Silent p.I49I 0.18 TCGA-J4-A67M-01 1 52847357 52847358 AG - ORC1 Frame_Shift_Del p.L697Kfs*4 0.14 TCGA-J4-A67M-01 1 67148041 67148041 G A SGIP1 Missense_Mutation p.G435E 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-J4-A67M-01 20 55914070 55914070 G A SPO11 Silent p.K290K 0.10 TCGA-J4-A67M-01 21 11038954 11038954 T C BAGE2 RNA 0.03 TCGA-J4-A67M-01 21 22804447 22804447 T A NCAM2 Nonsense_Mutation p.Y500* 0.15 TCGA-J4-A67M-01 21 34058198 34058198 A G SYNJ1 Silent p.A365A 0.22 TCGA-J4-A67M-01 22 21213458 21213458 C T SNAP29 Silent p.A20A 0.15 TCGA-J4-A67M-01 22 41573205 41573205 G T EP300 Missense_Mutation p.R1830S 0.11 probably_damaging(0.916) TCGA-J4-A67M-01 2 11053086 11053086 G A KCNF1 Silent p.S178S 0.06 TCGA-J4-A67M-01 2 145162525 145162525 T C ZEB2 Missense_Mutation p.D157G 0.18 deleterious(0.02) benign(0.154) TCGA-J4-A67M-01 2 218925389 218925389 G T CXCR2P1 RNA 0.19 TCGA-J4-A67M-01 2 233271853 233271853 G A ALPPL2 Missense_Mutation p.A52T 0.08 deleterious(0) probably_damaging(0.995) TCGA-J4-A67M-01 2 240961655 240961655 T C NDUFA10 Missense_Mutation p.I60V 0.16 tolerated(0.09) benign(0.408) TCGA-J4-A67M-01 2 26804200 26804200 G T CIB4 3'UTR 0.14 TCGA-J4-A67M-01 2 39053764 39053764 G A DHX57 Missense_Mutation p.P903S 0.25 deleterious(0.03) probably_damaging(0.986) TCGA-J4-A67M-01 3 128182004 128182004 G A DNAJB8 Missense_Mutation p.R29C 0.17 deleterious(0.02) benign(0.054) TCGA-J4-A67M-01 4 435941 435941 T A ZNF721 Missense_Mutation p.E772V 0.19 deleterious(0.01) benign(0.216) TCGA-J4-A67M-01 4 62903476 62903476 C T LPHN3 Nonsense_Mutation p.R1139* 0.07 TCGA-J4-A67M-01 5 101795412 101795412 G A SLCO6A1 Silent p.V323V 0.17 TCGA-J4-A67M-01 5 153144022 153144022 G A GRIA1 Missense_Mutation p.V628I 0.27 deleterious(0) probably_damaging(0.918) TCGA-J4-A67M-01 5 45262467 45262467 C T HCN1 Silent p.P743P 0.12 TCGA-J4-A67M-01 5 74641424 74641424 T C HMGCR Silent p.L131L 0.12 TCGA-J4-A67M-01 6 152776617 152776617 C A SYNE1 Missense_Mutation p.A946S 0.16 probably_damaging(0.997) TCGA-J4-A67M-01 7 148701024 148701024 G A PDIA4 Silent p.F600F 0.09 TCGA-J4-A67M-01 7 87165839 87165839 C T ABCB1 Missense_Mutation p.D806N 0.16 tolerated(0.14) benign(0.005) TCGA-J4-A67M-01 8 114389054 114389054 A G CSMD3 Intron 0.04 TCGA-J4-A67M-01 8 89068388 89068388 G A MMP16 Silent p.D447D 0.28 TCGA-J4-A67M-01 9 111745457 111745457 T C CTNNAL1 Missense_Mutation p.I290V 0.10 tolerated(0.83) benign(0.003) TCGA-J4-A67M-01 9 35093455 35093455 T C PIGO Missense_Mutation p.Y301C 0.21 deleterious(0) probably_damaging(0.999) TCGA-J4-A67N-01 10 103371045 103371045 C T FBXW4 3'UTR 0.06 TCGA-J4-A67N-01 10 116207677 116207677 G A ABLIM1 Missense_Mutation p.T566M 0.30 tolerated(0.1) benign(0.03) TCGA-J4-A67N-01 10 125780846 125780852 GCTGCAG - CHST15 Frame_Shift_Del p.L423Cfs*26 0.32 TCGA-J4-A67N-01 11 1157545 1157545 C T MUC5AC Silent p.D242D 0.12 TCGA-J4-A67N-01 13 22246172 22246172 G A FGF9 Missense_Mutation p.E41K 0.05 deleterious(0.03) benign(0.115) TCGA-J4-A67N-01 15 56285788 56285788 C T NEDD4 5'UTR 0.44 TCGA-J4-A67N-01 15 56657675 56657675 G C TEX9 Silent p.T9T 0.21 TCGA-J4-A67N-01 16 23391983 23391983 C T SCNN1B Missense_Mutation p.A595V 0.30 tolerated(0.29) benign(0.002) TCGA-J4-A67N-01 17 16593944 16593944 G T CCDC144A Missense_Mutation p.R77L 0.04 deleterious_low_confidence(0.05) benign(0.004) TCGA-J4-A67N-01 17 26099431 26099431 C T NOS2 Missense_Mutation p.R536Q 0.29 deleterious(0) probably_damaging(0.988) TCGA-J4-A67N-01 19 726159 726159 G A PALM Silent p.T9T 0.29 TCGA-J4-A67N-01 1 109867585 109867585 T G SORT1 Missense_Mutation p.E590D 0.50 tolerated(0.32) benign(0) TCGA-J4-A67N-01 1 21329207 21329207 G A EIF4G3 Missense_Mutation p.P10L 0.05 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-J4-A67N-01 1 35260022 35260022 T G GJA4 Missense_Mutation p.F70V 0.04 deleterious(0) probably_damaging(1) TCGA-J4-A67N-01 20 42825684 42825684 T C OSER1 3'UTR 0.10 TCGA-J4-A67N-01 22 17073401 17073401 G A CCT8L2 Missense_Mutation p.R14W 0.41 tolerated(0.1) possibly_damaging(0.791) TCGA-J4-A67N-01 2 219259418 219259418 G T SLC11A1 Silent p.V484V 0.09 TCGA-J4-A67N-01 2 238737984 238737984 T A RBM44 Missense_Mutation p.S910T 0.10 tolerated(0.07) possibly_damaging(0.786) TCGA-J4-A67N-01 2 56104979 56104979 G A EFEMP1 Missense_Mutation p.P221L 0.30 tolerated(0.39) benign(0.046) TCGA-J4-A67N-01 2 97019969 97019969 G T NCAPH Missense_Mutation p.D351Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-J4-A67N-01 3 36873598 36873598 C A TRANK1 Silent p.L2448L 0.05 TCGA-J4-A67N-01 4 23886556 23886556 T C PPARGC1A Splice_Site p.X19_splice 0.26 TCGA-J4-A67N-01 4 39522980 39522980 A G UGDH Silent p.P51P 0.14 TCGA-J4-A67N-01 5 153144159 153144159 G A GRIA1 Silent p.T673T 0.29 TCGA-J4-A67N-01 5 72419573 72419573 C G TMEM171 Missense_Mutation p.L125V 0.05 deleterious(0) possibly_damaging(0.795) TCGA-J4-A67N-01 6 31709057 31709058 - AG MSH5 Frame_Shift_Ins p.V91Efs*21 0.23 TCGA-J4-A67N-01 7 36561718 36561718 A G AOAH Missense_Mutation p.I509T 0.09 tolerated(0.52) benign(0.004) TCGA-J4-A67N-01 7 93536062 93536062 C A GNGT1 Missense_Mutation p.P2T 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.722) TCGA-J4-A67N-01 9 43627263 43627263 C T SPATA31A6 Missense_Mutation p.R475H 0.39 tolerated(0.31) benign(0.006) TCGA-J4-A67N-01 X 135290740 135290740 G A FHL1 Missense_Mutation p.V210M 0.74 deleterious(0.01) probably_damaging(0.997) TCGA-J4-A67N-01 X 62863890 62863890 T C ARHGEF9 Missense_Mutation p.M447V 0.14 tolerated(0.1) benign(0) TCGA-J4-A67N-01 X 91133813 91133813 C T PCDH11X Silent p.N858N 0.70 TCGA-J4-A67O-01 10 91371708 91371708 C G PANK1 Silent p.V267V 0.12 TCGA-J4-A67O-01 11 123814182 123814182 G A OR6T1 Missense_Mutation p.R122C 0.08 deleterious(0.01) possibly_damaging(0.637) TCGA-J4-A67O-01 11 64559403 64559403 C T MAP4K2 Silent p.T690T 0.42 TCGA-J4-A67O-01 12 369173 369173 G A SLC6A13 Missense_Mutation p.P16S 0.10 tolerated(0.19) benign(0.002) TCGA-J4-A67O-01 13 92345964 92345964 G A GPC5 Silent p.A283A 0.13 TCGA-J4-A67O-01 14 103416203 103416203 G T CDC42BPB Silent p.R1116R 0.14 TCGA-J4-A67O-01 15 42035035 42035035 C T MGA Missense_Mutation p.T1626I 0.09 tolerated(0.07) benign(0.303) TCGA-J4-A67O-01 16 87788845 87788845 G T KLHDC4 Silent p.T108T 0.16 TCGA-J4-A67O-01 17 78328255 78328255 G A RNF213 Missense_Mutation p.V3581I 0.11 benign(0.09) TCGA-J4-A67O-01 19 13346468 13346468 G T CACNA1A Missense_Mutation p.T1676N 0.09 benign(0.039) TCGA-J4-A67O-01 1 90178510 90178510 C T LRRC8C Silent p.F127F 0.08 TCGA-J4-A67O-01 1 91406702 91406702 T A ZNF644 Missense_Mutation p.N70I 0.13 deleterious(0) benign(0.302) TCGA-J4-A67O-01 20 62196338 62196338 C T HELZ2 Silent p.P1279P 0.09 TCGA-J4-A67O-01 2 201725863 201725863 C T CLK1 Intron 0.17 TCGA-J4-A67O-01 2 98349377 98349377 G A ZAP70 Missense_Mutation p.A199T 0.09 deleterious(0) probably_damaging(0.971) TCGA-J4-A67O-01 3 69097585 69097585 C T TMF1 Missense_Mutation p.D91N 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-J4-A67O-01 4 154702597 154702597 C T SFRP2 3'UTR 0.05 TCGA-J4-A67O-01 7 150699374 150699374 T C NOS3 Silent p.D578D 0.21 TCGA-J4-A67O-01 7 37903970 37903970 A C NME8 Missense_Mutation p.I159L 0.18 deleterious(0.02) possibly_damaging(0.539) TCGA-J4-A67O-01 7 76610521 76610521 C A UPK3B Intron 0.09 TCGA-J4-A67O-01 8 125535240 125535240 A G TATDN1 Missense_Mutation p.I9T 0.15 deleterious(0) probably_damaging(0.987) TCGA-J4-A67O-01 8 17088129 17088129 G C CNOT7 3'UTR 0.17 TCGA-J4-A67O-01 9 140157669 140157669 C T NELFB Missense_Mutation p.H260Y 0.14 deleterious(0.04) benign(0.34) TCGA-J4-A67O-01 9 85863145 85863145 C G FRMD3 Missense_Mutation p.L494F 0.11 tolerated(0.24) possibly_damaging(0.676) TCGA-J4-A67O-01 9 85863147 85863147 A C FRMD3 Missense_Mutation p.L494V 0.11 tolerated(0.39) benign(0.376) TCGA-J4-A67O-01 X 153136389 153136389 G A L1CAM Missense_Mutation p.R184W 0.18 deleterious(0) probably_damaging(1) TCGA-J4-A67Q-01 10 94413536 94413536 G C KIF11 Missense_Mutation p.A1052P 0.11 deleterious(0.04) benign(0.023) TCGA-J4-A67Q-01 10 98741523 98741523 G A C10orf12 Missense_Mutation p.A126T 0.05 tolerated(0.26) benign(0.031) TCGA-J4-A67Q-01 11 108143527 108143527 C G ATM Missense_Mutation p.L1078V 0.09 deleterious(0) possibly_damaging(0.572) TCGA-J4-A67Q-01 12 16704208 16704208 G A LMO3 Missense_Mutation p.T151M 0.06 tolerated(0.28) benign(0.096) TCGA-J4-A67Q-01 12 66703846 66703846 G A HELB Missense_Mutation p.V380I 0.24 deleterious(0.01) probably_damaging(0.936) TCGA-J4-A67Q-01 14 102452709 102452709 G A DYNC1H1 Missense_Mutation p.R716H 0.07 probably_damaging(0.967) TCGA-J4-A67Q-01 14 20344654 20344654 C T OR4K2 Silent p.F76F 0.13 TCGA-J4-A67Q-01 14 91791146 91791146 G A CCDC88C Missense_Mutation p.S440F 0.05 deleterious(0) probably_damaging(1) TCGA-J4-A67Q-01 16 570797 570797 G A RAB11FIP3 Silent p.V743V 0.24 TCGA-J4-A67Q-01 16 66967968 66967968 A T FAM96B Missense_Mutation p.D48E 0.21 tolerated(0.22) benign(0.252) TCGA-J4-A67Q-01 17 46805666 46805666 A G HOXB13 Missense_Mutation p.L97P 0.13 deleterious(0.01) probably_damaging(1) TCGA-J4-A67Q-01 18 56246844 56246844 C T ALPK2 Silent p.S388S 0.13 TCGA-J4-A67Q-01 1 100609646 100609646 A C TRMT13 Missense_Mutation p.E255A 0.08 tolerated(0.09) benign(0.023) TCGA-J4-A67Q-01 1 204951036 204951036 C T NFASC Silent p.Y786Y 0.19 TCGA-J4-A67Q-01 1 32120919 32120919 G A COL16A1 Missense_Mutation p.S1429F 0.15 unknown(0) TCGA-J4-A67Q-01 21 38114059 38114059 C T SIM2 Silent p.L298L 0.10 TCGA-J4-A67Q-01 3 72427735 72427735 A C RYBP Missense_Mutation p.V252G 0.09 deleterious(0) possibly_damaging(0.851) TCGA-J4-A67Q-01 5 177636394 177636394 C T HNRNPAB Missense_Mutation p.R245C 0.09 tolerated(0.18) unknown(0) TCGA-J4-A67Q-01 6 144416413 144416413 C G SF3B5 Missense_Mutation p.Q74H 0.17 tolerated(0.07) benign(0.166) TCGA-J4-A67Q-01 6 43275384 43275384 G C CRIP3 Silent p.P98P 0.15 TCGA-J4-A67Q-01 7 72988435 72988435 T A TBL2 Silent p.I93I 0.17 TCGA-J4-A67Q-01 8 2021549 2021549 C T MYOM2 Silent p.V363V 0.23 TCGA-J4-A67Q-01 9 21334407 21334408 AA - KLHL9 Frame_Shift_Del p.L151Gfs*2 0.18 TCGA-J4-A67Q-01 9 34372001 34372001 C G KIAA1161 Missense_Mutation p.R280P 0.14 deleterious(0.01) possibly_damaging(0.687) TCGA-J4-A67Q-01 9 82339965 82339965 C T TLE4 Missense_Mutation p.S743L 0.12 deleterious(0) probably_damaging(0.918) TCGA-J4-A67Q-01 9 94486363 94486363 T C ROR2 Missense_Mutation p.K805E 0.09 tolerated_low_confidence(0.15) possibly_damaging(0.65) TCGA-J4-A67R-01 10 134158049 134158049 G T LRRC27 Nonsense_Mutation p.E150* 0.06 TCGA-J4-A67R-01 11 112832282 112832282 G C NCAM1 Missense_Mutation p.G42A 0.18 tolerated_low_confidence(0.17) benign(0.021) TCGA-J4-A67R-01 11 47857211 47857211 G A NUP160 Nonsense_Mutation p.R365* 0.07 TCGA-J4-A67R-01 12 109915072 109915072 A C KCTD10 5'UTR 0.06 TCGA-J4-A67R-01 12 9243051 9243051 C T A2M Missense_Mutation p.A833T 0.08 tolerated(0.22) benign(0.002) TCGA-J4-A67R-01 13 51825914 51825914 C T FAM124A Silent p.H173H 0.20 TCGA-J4-A67R-01 14 106173748 106173748 G A IGHA1 Silent p.R273R 0.09 TCGA-J4-A67R-01 14 21623156 21623156 C T OR5AU1 Silent p.L343L 0.13 TCGA-J4-A67R-01 17 26094758 26094758 C T NOS2 Missense_Mutation p.D714N 0.12 tolerated(0.35) benign(0.012) TCGA-J4-A67R-01 17 7286330 7286330 G A TNK1 Missense_Mutation p.E29K 0.06 tolerated(0.06) benign(0.345) TCGA-J4-A67R-01 19 58423500 58423500 G C ZNF417 Missense_Mutation p.L31V 0.04 deleterious(0) possibly_damaging(0.837) TCGA-J4-A67R-01 1 158151489 158151489 C T CD1D Silent p.F102F 0.06 TCGA-J4-A67R-01 1 16577790 16577790 G A FBXO42 Missense_Mutation p.S510F 0.09 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-J4-A67R-01 1 6681772 6681772 G A PHF13 3'UTR 0.09 TCGA-J4-A67R-01 1 75107127 75107127 C A C1orf173 Missense_Mutation p.R111M 0.06 deleterious(0.05) possibly_damaging(0.893) TCGA-J4-A67R-01 22 50682700 50682700 T C TUBGCP6 Silent p.K63K 0.08 TCGA-J4-A67R-01 2 131976470 131976470 C T POTEE Silent p.D165D 0.04 TCGA-J4-A67R-01 4 96762205 96762205 C T PDHA2 Nonsense_Mutation p.R302* 0.10 TCGA-J4-A67R-01 5 180053141 180053141 G A FLT4 Missense_Mutation p.R410C 0.08 tolerated(0.07) benign(0.009) TCGA-J4-A67R-01 5 45645337 45645337 G A HCN1 Missense_Mutation p.R267C 0.11 deleterious(0) probably_damaging(0.998) TCGA-J4-A67R-01 7 99084225 99084225 A C ZNF789 Missense_Mutation p.K131T 0.12 tolerated(0.1) benign(0.153) TCGA-J4-A67S-01 10 73544680 73544680 C T CDH23 Silent p.N1850N 0.29 TCGA-J4-A67S-01 11 58126185 58126185 G A OR5B17 Missense_Mutation p.R120C 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.576) TCGA-J4-A67S-01 11 78277282 78277282 C A NARS2 Nonsense_Mutation p.E137* 0.06 TCGA-J4-A67S-01 15 90904247 90904247 G A ZNF774 Missense_Mutation p.R395Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-J4-A67S-01 16 30715429 30715429 C T SRCAP Silent p.A33A 0.23 TCGA-J4-A67S-01 16 84075582 84075582 C T SLC38A8 Missense_Mutation p.V61M 0.22 tolerated(0.13) possibly_damaging(0.512) TCGA-J4-A67S-01 17 16347342 16347342 G A FAM211A Missense_Mutation p.R199C 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-J4-A67S-01 17 38938515 38938515 G A KRT27 Silent p.H77H 0.25 TCGA-J4-A67S-01 18 5423443 5423443 G A EPB41L3 Missense_Mutation p.R425C 0.19 deleterious(0) probably_damaging(1) TCGA-J4-A67S-01 19 10561280 10561280 C T PDE4A Missense_Mutation p.R208W 0.25 deleterious(0.02) benign(0.062) TCGA-J4-A67S-01 19 41622408 41622408 C T CYP2F1 Missense_Mutation p.R74W 0.11 deleterious(0.03) probably_damaging(0.99) TCGA-J4-A67S-01 1 182571581 182571581 G C RGS16 Missense_Mutation p.S65W 0.16 deleterious(0) probably_damaging(1) TCGA-J4-A67S-01 1 43296726 43296726 C T ERMAP Nonsense_Mutation p.R125* 0.16 TCGA-J4-A67S-01 22 38165192 38165192 C T TRIOBP Nonsense_Mutation p.Q2245* 0.33 TCGA-J4-A67S-01 2 220402012 220402012 C T ASIC4 Missense_Mutation p.T565M 0.23 deleterious(0) probably_damaging(0.999) TCGA-J4-A67S-01 2 69002491 69002491 A G ARHGAP25 Missense_Mutation p.Y67C 0.03 deleterious(0) probably_damaging(0.995) TCGA-J4-A67S-01 3 167217986 167217986 C A WDR49 Nonsense_Mutation p.E644* 0.18 TCGA-J4-A67S-01 5 147718067 147718067 A C SPINK9 Missense_Mutation p.L38F 0.29 tolerated(0.06) benign(0.067) TCGA-J4-A67S-01 7 1026363 1026363 C T CYP2W1 Missense_Mutation p.A250V 0.32 tolerated(0.06) benign(0.052) TCGA-J4-A67S-01 8 109001362 109001362 G A RSPO2 Missense_Mutation p.R69C 0.19 deleterious(0) probably_damaging(0.976) TCGA-J4-A67S-01 X 107976000 107976000 G A IRS4 Missense_Mutation p.P1192L 0.04 tolerated_low_confidence(0.13) unknown(0) TCGA-J4-A67T-01 10 103906642 103906642 A G PPRC1 Missense_Mutation p.Y1298C 0.21 deleterious(0) probably_damaging(0.999) TCGA-J4-A67T-01 10 25887131 25887131 A - GPR158 Frame_Shift_Del p.K860Nfs*2 0.08 TCGA-J4-A67T-01 11 119216272 119216273 - G MFRP Frame_Shift_Ins p.N167Qfs*34 0.12 TCGA-J4-A67T-01 12 43944936 43944936 G A ADAMTS20 Nonsense_Mutation p.R77* 0.23 TCGA-J4-A67T-01 12 55252110 55252110 G C MUCL1 3'UTR 0.19 TCGA-J4-A67T-01 13 29599579 29599579 C T MTUS2 Silent p.T258T 0.17 TCGA-J4-A67T-01 13 46543691 46543691 T - ZC3H13 Frame_Shift_Del p.G997Dfs*40 0.17 TCGA-J4-A67T-01 14 74991895 74991895 C T LTBP2 Missense_Mutation p.G821E 0.13 tolerated(0.86) benign(0.004) TCGA-J4-A67T-01 14 93673430 93673430 A C C14orf142 5'UTR 0.15 TCGA-J4-A67T-01 16 70506437 70506437 C T FUK Intron 0.20 TCGA-J4-A67T-01 16 90001622 90001622 G A TUBB3 Missense_Mutation p.V255I 0.05 deleterious_low_confidence(0.02) possibly_damaging(0.768) TCGA-J4-A67T-01 18 44627398 44627398 G A KATNAL2 3'UTR 0.08 TCGA-J4-A67T-01 19 37580021 37580021 A G ZNF420 Translation_Start_Site p.M1? 0.04 deleterious(0.03) benign(0.019) TCGA-J4-A67T-01 1 152733118 152733118 C T KPRP Missense_Mutation p.R352C 0.09 tolerated(0.07) possibly_damaging(0.809) TCGA-J4-A67T-01 1 169511343 169511343 C A F5 Missense_Mutation p.Q995H 0.21 tolerated_low_confidence(0.14) benign(0.026) TCGA-J4-A67T-01 22 39428330 39428330 C T APOBEC3D 3'UTR 0.22 TCGA-J4-A67T-01 2 136558282 136558282 G A LCT Silent p.R1587R 0.19 TCGA-J4-A67T-01 2 209307106 209307106 C T PTH2R Silent p.R143R 0.13 TCGA-J4-A67T-01 3 109050826 109050826 C T DPPA4 Silent p.K77K 0.05 TCGA-J4-A67T-01 3 78666863 78666863 C - ROBO1 Frame_Shift_Del p.D1402Tfs*15 0.18 TCGA-J4-A67T-01 4 109767343 109767343 G A COL25A1 Silent p.D489D 0.24 TCGA-J4-A67T-01 5 140474539 140474539 G T PCDHB2 Silent p.G55G 0.06 TCGA-J4-A67T-01 5 32403259 32403259 T A ZFR Missense_Mutation p.T490S 0.16 tolerated(0.77) unknown(0) TCGA-J4-A67T-01 7 142176530 142176530 A T TRBV7-4 Missense_Mutation p.V49E 0.20 tolerated(1) benign(0.005) TCGA-J4-A67T-01 8 139278013 139278013 C T FAM135B Missense_Mutation p.R77Q 0.07 deleterious(0) probably_damaging(0.914) TCGA-J4-A67T-01 X 72674374 72674374 C T CDX4 Missense_Mutation p.R270C 0.21 tolerated(0.22) benign(0) TCGA-J4-A6G1-01 10 6157238 6157238 T C RBM17 Missense_Mutation p.F356L 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-J4-A6G1-01 17 41582116 41582116 G A DHX8 Missense_Mutation p.G551R 0.08 deleterious(0.01) possibly_damaging(0.858) TCGA-J4-A6G1-01 19 19576172 19576172 C T GATAD2A Silent p.C6C 0.07 TCGA-J4-A6G1-01 1 152276820 152276820 G C FLG Missense_Mutation p.D3514E 0.05 unknown(0) TCGA-J4-A6G1-01 1 155851027 155851027 C T SYT11 Missense_Mutation p.R342C 0.09 deleterious(0) probably_damaging(0.999) TCGA-J4-A6G1-01 1 161480636 161480636 G T FCGR2A Missense_Mutation p.G211V 0.06 tolerated(0.12) benign(0.026) TCGA-J4-A6G1-01 1 186106992 186106992 C T HMCN1 Silent p.R4604R 0.05 TCGA-J4-A6G1-01 1 22074643 22074643 A C USP48 Missense_Mutation p.F299C 0.08 deleterious(0) probably_damaging(0.978) TCGA-J4-A6G1-01 1 31189120 31189120 G A MATN1 Silent p.D281D 0.07 TCGA-J4-A6G1-01 1 38082185 38082185 G A RSPO1 Missense_Mutation p.A86V 0.06 tolerated(1) benign(0.002) TCGA-J4-A6G1-01 1 75038567 75038567 C T C1orf173 Missense_Mutation p.G943R 0.07 tolerated(0.21) benign(0.001) TCGA-J4-A6G1-01 20 47850144 47850144 C T DDX27 Missense_Mutation p.R422W 0.05 deleterious(0) probably_damaging(0.979) TCGA-J4-A6G1-01 22 37163883 37163883 C T IFT27 Missense_Mutation p.A20T 0.06 tolerated(0.06) benign(0.078) TCGA-J4-A6G1-01 2 233899740 233899740 C A NEU2 Silent p.A372A 0.05 TCGA-J4-A6G1-01 3 50340316 50340316 G T HYAL1 Silent p.G24G 0.06 TCGA-J4-A6G1-01 5 140626461 140626461 G A PCDHB15 Missense_Mutation p.V439M 0.05 deleterious_low_confidence(0) possibly_damaging(0.768) TCGA-J4-A6G1-01 7 100320666 100320666 T G EPO Silent p.T164T 0.04 TCGA-J4-A6G1-01 9 100970983 100970983 T G TBC1D2 Missense_Mutation p.N706T 0.07 deleterious(0) possibly_damaging(0.856) TCGA-J4-A6G1-01 9 128268595 128268595 C G MAPKAP1 Missense_Mutation p.E354Q 0.05 tolerated(0.11) possibly_damaging(0.743) TCGA-J4-A6G3-01 11 61118523 61118523 G A CYB561A3 Silent p.L232L 0.16 TCGA-J4-A6G3-01 11 65623504 65623504 A - CFL1 Frame_Shift_Del p.F71Lfs*45 0.12 TCGA-J4-A6G3-01 11 66358990 66358990 C T CCDC87 Missense_Mutation p.M499I 0.18 tolerated(0.16) benign(0.003) TCGA-J4-A6G3-01 12 66788097 66788097 C T GRIP1 Missense_Mutation p.V622M 0.11 deleterious(0) probably_damaging(0.979) TCGA-J4-A6G3-01 13 98043657 98043657 A G MBNL2 3'UTR 0.08 TCGA-J4-A6G3-01 14 37132444 37132444 A G PAX9 Missense_Mutation p.N116S 0.09 deleterious(0.05) probably_damaging(0.922) TCGA-J4-A6G3-01 14 74959974 74959974 G A NPC2 Missense_Mutation p.R2C 0.13 deleterious(0.03) possibly_damaging(0.876) TCGA-J4-A6G3-01 14 95921914 95921914 G A SYNE3 Missense_Mutation p.R313C 0.03 deleterious(0.02) possibly_damaging(0.901) TCGA-J4-A6G3-01 15 22933658 22933658 G T CYFIP1 Splice_Site p.X222_splice 0.05 TCGA-J4-A6G3-01 17 47696426 47696426 A C SPOP Missense_Mutation p.F133V 0.09 deleterious(0.03) probably_damaging(0.998) TCGA-J4-A6G3-01 17 63554729 63554729 C A AXIN2 Missense_Mutation p.A4S 0.07 tolerated(0.06) benign(0.354) TCGA-J4-A6G3-01 17 72736966 72736966 C T RAB37 Silent p.D56D 0.09 TCGA-J4-A6G3-01 1 36748270 36748273 TCTC - THRAP3 Frame_Shift_Del p.S38Vfs*7 0.16 TCGA-J4-A6G3-01 1 74507071 74507071 C T LRRIQ3 Missense_Mutation p.R515H 0.05 tolerated(0.47) benign(0.021) TCGA-J4-A6G3-01 1 85127952 85127952 T C SSX2IP Missense_Mutation p.K286E 0.04 deleterious(0.01) benign(0.26) TCGA-J4-A6G3-01 20 8639228 8639228 G A PLCB1 Missense_Mutation p.D247N 0.15 tolerated(0.11) benign(0.01) TCGA-J4-A6G3-01 2 39452993 39452993 T - CDKL4 Frame_Shift_Del p.R93Efs*10 0.17 TCGA-J4-A6G3-01 3 14861542 14861542 G A FGD5 Missense_Mutation p.E322K 0.06 deleterious(0.01) probably_damaging(0.991) TCGA-J4-A6G3-01 3 197665464 197665464 T A IQCG Missense_Mutation p.Q157L 0.08 deleterious(0) possibly_damaging(0.758) TCGA-J4-A6G3-01 3 33552238 33552238 C T CLASP2 Missense_Mutation p.E1385K 0.14 tolerated(0.11) probably_damaging(0.998) TCGA-J4-A6G3-01 3 48573871 48573871 C A PFKFB4 Missense_Mutation p.D220Y 0.16 probably_damaging(0.967) TCGA-J4-A6G3-01 4 155510000 155510000 A G FGA Silent p.H103H 0.08 TCGA-J4-A6G3-01 5 132158689 132158689 C T SHROOM1 Silent p.L786L 0.08 TCGA-J4-A6G3-01 6 32522465 32522465 A G RNU1-61P 5'Flank 0.03 TCGA-J4-A6G3-01 6 33174536 33174536 G T HSD17B8 3'UTR 0.10 TCGA-J4-A6G3-01 6 56819267 56819267 C T BEND6 5'Flank 0.08 TCGA-J4-A6G3-01 7 92734007 92734007 T C SAMD9 Silent p.V468V 0.17 TCGA-J4-A6G3-01 8 110442248 110442248 G A PKHD1L1 Missense_Mutation p.A1071T 0.12 tolerated(0.29) benign(0.009) TCGA-J4-A6G3-01 8 81897133 81897133 G C PAG1 Missense_Mutation p.P252A 0.07 tolerated(0.81) benign(0.009) TCGA-J4-A6G3-01 X 128599496 128599496 C T SMARCA1 Splice_Site p.X1010_splice 0.25 TCGA-J4-A6G3-01 X 128914084 128914084 G A SASH3 Missense_Mutation p.R4H 0.12 deleterious(0) possibly_damaging(0.877) TCGA-J4-A6M7-01 10 18429692 18429692 G T CACNB2 Silent p.S9S 0.82 TCGA-J4-A6M7-01 12 109292551 109292551 C T DAO Silent p.C264C 0.08 TCGA-J4-A6M7-01 12 114841632 114841632 G A TBX5 Silent p.C24C 0.36 TCGA-J4-A6M7-01 12 54966490 54966490 A G PDE1B Missense_Mutation p.T234A 0.10 deleterious(0) possibly_damaging(0.787) TCGA-J4-A6M7-01 15 33795933 33795933 C T RYR3 Silent p.G91G 0.27 TCGA-J4-A6M7-01 17 40843294 40843294 C T CNTNAP1 Silent p.D733D 0.37 TCGA-J4-A6M7-01 1 110604148 110604148 C T ALX3 Missense_Mutation p.R211H 0.34 deleterious(0) probably_damaging(0.998) TCGA-J4-A6M7-01 1 113658960 113658960 C T LRIG2 Missense_Mutation p.T861M 0.42 deleterious(0.03) possibly_damaging(0.781) TCGA-J4-A6M7-01 1 198721481 198721481 T C PTPRC Missense_Mutation p.F1104S 0.33 deleterious(0) probably_damaging(0.997) TCGA-J4-A6M7-01 20 54823920 54823920 G T MC3R Silent p.L7L 0.36 TCGA-J4-A6M7-01 22 17071981 17071981 T A CCT8L2 Missense_Mutation p.N487I 0.40 deleterious(0) probably_damaging(0.976) TCGA-J4-A6M7-01 22 38823055 38823055 C G KCNJ4 Silent p.L361L 0.07 TCGA-J4-A6M7-01 2 26696866 26696866 C T OTOF Missense_Mutation p.R1134Q 0.40 deleterious(0.01) possibly_damaging(0.796) TCGA-J4-A6M7-01 4 94138039 94138039 G T GRID2 Missense_Mutation p.D314Y 0.43 deleterious(0.01) possibly_damaging(0.905) TCGA-J4-A6M7-01 5 32089674 32089674 G A PDZD2 Silent p.A2040A 0.04 TCGA-J4-A6M7-01 6 136599814 136599814 G A BCLAF1 Nonsense_Mutation p.R69* 0.16 TCGA-J4-A6M7-01 6 149700269 149700269 A G TAB2 Silent p.T406T 0.35 TCGA-J4-A6M7-01 6 35754858 35754858 C T CLPSL1 Silent p.C61C 0.15 TCGA-J4-A6M7-01 7 2752278 2752278 A C AMZ1 Missense_Mutation p.E421D 0.42 tolerated_low_confidence(0.44) benign(0.01) TCGA-J4-A6M7-01 8 20004825 20004825 C T SLC18A1 Missense_Mutation p.V470I 0.18 tolerated(0.41) benign(0.001) TCGA-J4-A6M7-01 9 136857224 136857224 G T VAV2 Missense_Mutation p.D59E 0.30 tolerated(1) benign(0.009) TCGA-J4-A6M7-01 X 7880088 7880088 A G PNPLA4 Missense_Mutation p.L153P 0.88 tolerated(1) benign(0) TCGA-J4-A83I-01 11 113639666 113639666 G C ZW10 Missense_Mutation p.S43R 0.37 tolerated(0.38) benign(0.026) TCGA-J4-A83I-01 11 55038490 55038490 C G TRIM48 3'UTR 0.10 TCGA-J4-A83I-01 11 55405837 55405838 - A OR4P4 Frame_Shift_Ins p.S4Kfs*3 0.41 TCGA-J4-A83I-01 12 100042107 100042107 A G FAM71C Missense_Mutation p.Q52R 0.33 deleterious(0) probably_damaging(1) TCGA-J4-A83I-01 12 119592130 119592130 C A SRRM4 Missense_Mutation p.P492T 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-J4-A83I-01 12 119624850 119624850 C A HSPB8 Missense_Mutation p.Q130K 0.07 tolerated(0.12) benign(0.008) TCGA-J4-A83I-01 12 130184522 130184522 G A TMEM132D Silent p.I267I 0.26 TCGA-J4-A83I-01 12 132322841 132322841 G A MMP17 Silent p.Q87Q 0.35 TCGA-J4-A83I-01 12 57957899 57957899 G A KIF5A Silent p.L100L 0.38 TCGA-J4-A83I-01 12 772599 772599 C T NINJ2 Silent p.T22T 0.04 TCGA-J4-A83I-01 15 45386320 45386320 C T DUOX2 3'UTR 0.10 TCGA-J4-A83I-01 15 72638823 72638823 C T HEXA Intron 0.42 TCGA-J4-A83I-01 17 5264971 5264971 G C RABEP1 Splice_Site p.X521_splice 0.40 TCGA-J4-A83I-01 19 15763396 15763396 G A CYP4F3 Silent p.K312K 0.04 TCGA-J4-A83I-01 1 103540313 103540313 A T COL11A1 Missense_Mutation p.V171E 0.38 probably_damaging(0.999) TCGA-J4-A83I-01 1 11155880 11155881 - T EXOSC10 Frame_Shift_Ins p.V103Sfs*3 0.27 TCGA-J4-A83I-01 20 34782245 34782245 G A EPB41L1 Missense_Mutation p.G471E 0.27 tolerated(0.88) benign(0.001) TCGA-J4-A83I-01 20 44671824 44671824 G A SLC12A5 Missense_Mutation p.V390M 0.41 tolerated(0.19) benign(0.007) TCGA-J4-A83I-01 22 20457165 20457165 C G RIMBP3 Missense_Mutation p.L1379F 0.07 tolerated(0.09) benign(0.022) TCGA-J4-A83I-01 2 190636618 190636618 C T ORMDL1 Missense_Mutation p.A113T 0.07 tolerated(1) benign(0.014) TCGA-J4-A83I-01 2 242066448 242066448 G A PASK Missense_Mutation p.P628S 0.53 tolerated(0.13) benign(0.085) TCGA-J4-A83I-01 2 79255434 79255434 C T REG3G 3'UTR 0.08 TCGA-J4-A83I-01 3 196742335 196742335 C T MFI2 Silent p.K378K 0.50 TCGA-J4-A83I-01 4 155254287 155254287 C T DCHS2 Missense_Mutation p.V526I 0.37 tolerated(0.78) benign(0.007) TCGA-J4-A83I-01 4 170912697 170912697 G C MFAP3L Silent p.P354P 0.35 TCGA-J4-A83I-01 5 134152276 134152276 T C DDX46 Silent p.L865L 0.45 TCGA-J4-A83I-01 5 140531920 140531920 G A PCDHB6 Silent p.S694S 0.38 TCGA-J4-A83I-01 5 140615769 140615769 G A PCDHB18 RNA 0.08 TCGA-J4-A83I-01 6 17556729 17556730 AA T CAP2 3'UTR 0.22 TCGA-J4-A83I-01 6 29912007 29912007 G A HLA-A Missense_Mutation p.R243Q 0.11 tolerated_low_confidence(0.06) benign(0.019) TCGA-J4-A83I-01 6 76124576 76124576 T G FILIP1 Missense_Mutation p.K38T 0.44 tolerated(0.25) benign(0.113) TCGA-J4-A83I-01 8 104330852 104330852 C T FZD6 Missense_Mutation p.P71L 0.44 deleterious(0.05) benign(0.211) TCGA-J4-A83I-01 9 104314097 104314097 A G RNF20 Silent p.Q468Q 0.41 TCGA-J4-A83I-01 9 132571230 132571230 C T TOR1B Missense_Mutation p.R230W 0.05 deleterious(0) possibly_damaging(0.586) TCGA-J4-A83I-01 9 140510297 140510297 C T C9orf37 Missense_Mutation p.V119M 0.37 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-J4-A83I-01 X 14883152 14883152 C A FANCB Missense_Mutation p.V161F 0.82 deleterious(0.01) possibly_damaging(0.576) TCGA-J4-A83I-01 X 3235405 3235405 G C MXRA5 Missense_Mutation p.T2106R 0.87 deleterious(0) probably_damaging(1) TCGA-J4-A83J-01 10 116213226 116213226 G A ABLIM1 Silent p.S486S 0.17 TCGA-J4-A83J-01 10 129224169 129224169 A G DOCK1 Missense_Mutation p.H1582R 0.29 deleterious(0) probably_damaging(0.985) TCGA-J4-A83J-01 10 134165247 134165247 C T LRRC27 Nonsense_Mutation p.Q355* 0.08 TCGA-J4-A83J-01 10 134743283 134743283 G A TTC40 Missense_Mutation p.R298C 0.18 deleterious(0) probably_damaging(0.948) TCGA-J4-A83J-01 10 23482633 23482633 G T PTF1A Missense_Mutation p.R262L 0.04 deleterious(0.01) unknown(0) TCGA-J4-A83J-01 10 25887198 25887198 C T GPR158 Silent p.S881S 0.26 TCGA-J4-A83J-01 10 30739283 30739283 G A MAP3K8 Missense_Mutation p.E201K 0.28 tolerated(0.16) benign(0.082) TCGA-J4-A83J-01 10 3208477 3208477 T C PITRM1 Missense_Mutation p.D121G 0.34 deleterious(0) probably_damaging(0.981) TCGA-J4-A83J-01 11 16776791 16776791 C T C11orf58 3'UTR 0.11 TCGA-J4-A83J-01 11 18500423 18500423 C T LDHAL6A 3'UTR 0.28 TCGA-J4-A83J-01 11 55579005 55579005 T A OR5L1 Silent p.P21P 0.28 TCGA-J4-A83J-01 11 57995629 57995629 C T OR10Q1 Missense_Mutation p.R240H 0.13 tolerated(0.79) benign(0.022) TCGA-J4-A83J-01 12 66620595 66620595 T A IRAK3 Missense_Mutation p.L249H 0.32 deleterious(0) probably_damaging(0.999) TCGA-J4-A83J-01 12 6702291 6702291 T C CHD4 Missense_Mutation p.D873G 0.13 deleterious(0) probably_damaging(0.945) TCGA-J4-A83J-01 13 33629460 33629460 A G KL Intron 0.07 TCGA-J4-A83J-01 14 64891519 64891519 C T MTHFD1 Intron 0.21 TCGA-J4-A83J-01 15 77473916 77473918 TTG - PEAK1 In_Frame_Del p.N120del 0.21 TCGA-J4-A83J-01 15 81224300 81224300 G A KIAA1199 Missense_Mutation p.A905T 0.30 deleterious(0) probably_damaging(0.999) TCGA-J4-A83J-01 16 21082111 21082111 T - DNAH3 Frame_Shift_Del p.M1041Cfs*7 0.23 TCGA-J4-A83J-01 16 23436137 23436137 C A COG7 Silent p.L314L 0.28 TCGA-J4-A83J-01 16 30581273 30581273 G A ZNF688 Silent p.F265F 0.32 TCGA-J4-A83J-01 16 3658512 3658512 C G SLX4 Missense_Mutation p.V152L 0.31 tolerated(0.26) benign(0.001) TCGA-J4-A83J-01 17 38182486 38182486 A T MED24 Silent p.R636R 0.08 TCGA-J4-A83J-01 17 42152704 42152704 C A G6PC3 Missense_Mutation p.P188T 0.33 tolerated(0.18) possibly_damaging(0.816) TCGA-J4-A83J-01 17 42271458 42271458 G A ATXN7L3 3'UTR 0.31 TCGA-J4-A83J-01 17 47696425 47696425 A C SPOP Missense_Mutation p.F133C 0.27 deleterious(0.01) probably_damaging(1) TCGA-J4-A83J-01 17 62130676 62130676 T - ERN1 Frame_Shift_Del p.Q670Rfs*20 0.24 TCGA-J4-A83J-01 18 21441709 21441709 G T LAMA3 Nonsense_Mutation p.E1508* 0.12 TCGA-J4-A83J-01 18 74620343 74620343 C T ZNF236 Nonsense_Mutation p.Q787* 0.04 TCGA-J4-A83J-01 19 48845943 48845943 C T TMEM143 Silent p.T273T 0.26 TCGA-J4-A83J-01 19 54710322 54710322 C T RPS9 Silent p.R133R 0.18 TCGA-J4-A83J-01 1 197030039 197030039 T A F13B Silent p.P206P 0.29 TCGA-J4-A83J-01 1 37267464 37267464 A T GRIK3 Silent p.P916P 0.08 TCGA-J4-A83J-01 22 17621968 17621968 C T CECR5 Missense_Mutation p.A243T 0.07 deleterious(0) benign(0.313) TCGA-J4-A83J-01 2 133636429 133636429 G T NCKAP5 Missense_Mutation p.L214I 0.24 deleterious(0) possibly_damaging(0.686) TCGA-J4-A83J-01 2 190531908 190531910 TCT - ASNSD1 In_Frame_Del p.L352del 0.23 TCGA-J4-A83J-01 2 231663527 231663527 T C CAB39 Missense_Mutation p.L161S 0.29 deleterious(0) probably_damaging(0.996) TCGA-J4-A83J-01 2 241726712 241726712 G A KIF1A Missense_Mutation p.R129W 0.32 deleterious(0) probably_damaging(0.991) TCGA-J4-A83J-01 2 27147850 27147850 G A DPYSL5 Silent p.L119L 0.39 TCGA-J4-A83J-01 2 97276875 97276875 C G KANSL3 Missense_Mutation p.V363L 0.18 deleterious(0.02) probably_damaging(0.975) TCGA-J4-A83J-01 3 189612175 189612175 C T TP63 Nonsense_Mutation p.R643* 0.19 TCGA-J4-A83J-01 3 50005613 50005613 C T RBM6 Missense_Mutation p.T252M 0.29 tolerated(0.11) benign(0.021) TCGA-J4-A83J-01 3 71027139 71027139 C T FOXP1 Silent p.S398S 0.34 TCGA-J4-A83J-01 4 119059263 119059263 G A NDST3 Missense_Mutation p.V427I 0.32 deleterious(0.04) benign(0.32) TCGA-J4-A83J-01 4 166021832 166021832 G T TMEM192 Silent p.I129I 0.23 TCGA-J4-A83J-01 4 69962451 69962451 T C UGT2B7 Silent p.A71A 0.27 TCGA-J4-A83J-01 4 69962788 69962788 A G UGT2B7 Missense_Mutation p.S184G 0.25 tolerated(0.14) benign(0.011) TCGA-J4-A83J-01 5 110819729 110819729 G A CAMK4 Silent p.A329A 0.49 TCGA-J4-A83J-01 6 110081568 110081568 T G FIG4 Missense_Mutation p.M418R 0.06 deleterious(0) probably_damaging(0.926) TCGA-J4-A83J-01 6 131277399 131277399 C T EPB41L2 Missense_Mutation p.R76Q 0.09 deleterious(0) probably_damaging(0.96) TCGA-J4-A83J-01 6 144783990 144783990 C T UTRN Silent p.L1018L 0.18 TCGA-J4-A83J-01 6 39847179 39847179 G A DAAM2 Missense_Mutation p.V591I 0.20 tolerated(0.4) benign(0) TCGA-J4-A83J-01 7 104750743 104750743 G T KMT2E Missense_Mutation p.V1258L 0.11 deleterious_low_confidence(0) benign(0.097) TCGA-J4-A83J-01 7 116399499 116399499 G A MET Silent p.P791P 0.26 TCGA-J4-A83J-01 8 113812389 113812389 A G CSMD3 Splice_Site p.X658_splice 0.27 TCGA-J4-A83J-01 8 25364244 25364244 A C CDCA2 Missense_Mutation p.N688H 0.23 tolerated(0.18) benign(0.048) TCGA-J4-A83J-01 8 30694898 30694898 C T TEX15 Missense_Mutation p.D2585N 0.25 tolerated(0.08) benign(0.027) TCGA-J4-A83J-01 8 32453407 32453407 C T NRG1 Silent p.V54V 0.04 TCGA-J4-A83J-01 8 8748174 8748174 G A MFHAS1 Missense_Mutation p.P799S 0.33 tolerated(0.2) probably_damaging(0.996) TCGA-J4-A83J-01 8 96070121 96070121 C G NDUFAF6 Missense_Mutation p.L320V 0.24 deleterious(0.01) probably_damaging(0.954) TCGA-J4-A83J-01 9 107645339 107645339 C T ABCA1 Silent p.Q134Q 0.07 TCGA-J4-A83J-01 X 34962650 34962652 ATT - FAM47B In_Frame_Del p.I568del 0.59 TCGA-J4-A83J-01 X 85212902 85212902 T C CHM Missense_Mutation p.T300A 0.65 deleterious(0.02) benign(0.109) TCGA-J4-A83K-01 10 108431072 108431072 C G SORCS1 Missense_Mutation p.E704D 0.06 tolerated(0.29) benign(0.03) TCGA-J4-A83K-01 10 24832821 24832821 C T KIAA1217 Missense_Mutation p.T1541M 0.26 tolerated(0.19) benign(0.02) TCGA-J4-A83K-01 10 73521442 73521442 C T C10orf54 Missense_Mutation p.G142S 0.12 deleterious(0) probably_damaging(1) TCGA-J4-A83K-01 11 18762159 18762159 C T PTPN5 Silent p.A302A 0.40 TCGA-J4-A83K-01 12 71978097 71978097 C A LGR5 Silent p.A769A 0.21 TCGA-J4-A83K-01 12 72969157 72969157 C T TRHDE Missense_Mutation p.R707W 0.11 deleterious(0.01) probably_damaging(0.962) TCGA-J4-A83K-01 13 110436686 110436686 C T IRS2 Missense_Mutation p.R572H 0.25 deleterious(0) probably_damaging(0.999) TCGA-J4-A83K-01 13 52951824 52951824 G A THSD1 Missense_Mutation p.R761W 0.11 deleterious(0.01) benign(0.212) TCGA-J4-A83K-01 15 80806707 80806707 G C ARNT2 Missense_Mutation p.V280L 0.31 deleterious(0) benign(0.097) TCGA-J4-A83K-01 15 85403112 85403112 C T ALPK3 Silent p.T1559T 0.24 TCGA-J4-A83K-01 17 40485979 40485979 C A STAT3 Missense_Mutation p.D296Y 0.28 deleterious(0) probably_damaging(1) TCGA-J4-A83K-01 19 42597984 42597984 T G POU2F2 Missense_Mutation p.T399P 0.03 deleterious(0.03) probably_damaging(0.986) TCGA-J4-A83K-01 19 46997772 46997772 C T PNMAL2 Silent p.Q317Q 0.10 TCGA-J4-A83K-01 19 55344192 55344192 G A KIR3DL1 3'Flank 0.05 TCGA-J4-A83K-01 19 9074563 9074563 C T MUC16 Missense_Mutation p.E4295K 0.36 unknown(0) TCGA-J4-A83K-01 1 70339354 70339354 G A LRRC7 Intron 0.16 TCGA-J4-A83K-01 20 29960700 29960700 C G DEFB118 Missense_Mutation p.H33Q 0.08 tolerated(0.48) possibly_damaging(0.85) TCGA-J4-A83K-01 22 17443635 17443635 G A GAB4 Silent p.G571G 0.16 TCGA-J4-A83K-01 2 141739814 141739814 G A LRP1B Silent p.C934C 0.28 TCGA-J4-A83K-01 3 165491285 165491285 T A BCHE Missense_Mutation p.D565V 0.28 deleterious(0.01) possibly_damaging(0.543) TCGA-J4-A83K-01 3 54786663 54786663 C T CACNA2D3 Missense_Mutation p.A402V 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-J4-A83K-01 3 9754692 9754692 A C CPNE9 Missense_Mutation p.K193N 0.20 deleterious(0.04) probably_damaging(0.965) TCGA-J4-A83K-01 5 140175828 140175828 G A PCDHA2 Missense_Mutation p.A427T 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.59) TCGA-J4-A83K-01 5 148407722 148407722 A - SH3TC2 Frame_Shift_Del p.W525Gfs*13 0.26 TCGA-J4-A83K-01 5 41172406 41172406 T A C6 Silent p.T404T 0.08 TCGA-J4-A83K-01 6 28097612 28097612 C T ZSCAN16 Nonsense_Mutation p.Q311* 0.09 TCGA-J4-A83K-01 6 90660405 90660405 G A BACH2 Missense_Mutation p.L474F 0.34 tolerated(0.09) probably_damaging(0.991) TCGA-J4-A83K-01 7 150752140 150752140 G T CDK5 Silent p.V208V 0.19 TCGA-J4-A83K-01 7 73114750 73114750 C T STX1A Missense_Mutation p.G285D 0.08 deleterious(0.01) probably_damaging(1) TCGA-J4-A83K-01 7 86493648 86493648 G A GRM3 Missense_Mutation p.D873N 0.07 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-J4-A83K-01 9 123215999 123215999 G A CDK5RAP2 Missense_Mutation p.S843F 0.04 tolerated(0.07) possibly_damaging(0.831) TCGA-J4-A83K-01 9 139326360 139326360 C T INPP5E Missense_Mutation p.V489M 0.21 deleterious(0.02) possibly_damaging(0.553) TCGA-J4-A83K-01 X 120182502 120182502 C T GLUD2 Missense_Mutation p.R322C 0.13 deleterious(0) probably_damaging(0.96) TCGA-J4-A83L-01 10 13213058 13213058 C T MCM10 Silent p.A48A 0.14 TCGA-J4-A83L-01 11 10649268 10649268 C T MRVI1 Missense_Mutation p.E249K 0.24 tolerated_low_confidence(0.16) benign(0.003) TCGA-J4-A83L-01 11 7982638 7982638 G A NLRP10 Missense_Mutation p.S174L 0.09 tolerated(0.06) possibly_damaging(0.453) TCGA-J4-A83L-01 12 120990388 120990388 T G RNF10 Silent p.T147T 0.09 TCGA-J4-A83L-01 13 29599806 29599806 G A MTUS2 Missense_Mutation p.G334E 0.14 tolerated(1) benign(0.037) TCGA-J4-A83L-01 14 55903530 55903530 G A TBPL2 Silent p.H119H 0.17 TCGA-J4-A83L-01 15 25468443 25468443 A G SNORD115-29 RNA 0.05 TCGA-J4-A83L-01 15 49288768 49288768 A C SECISBP2L Missense_Mutation p.L807V 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-J4-A83L-01 17 15989710 15989710 G A NCOR1 Silent p.G1021G 0.34 TCGA-J4-A83L-01 17 76993228 76993228 C T CANT1 Silent p.A159A 0.08 TCGA-J4-A83L-01 19 46914722 46914722 G A CCDC8 Missense_Mutation p.P449L 0.21 benign(0.004) TCGA-J4-A83L-01 1 156213664 156213664 C T PAQR6 Silent p.A348A 0.05 TCGA-J4-A83L-01 21 40190389 40190389 G A ETS2 Silent p.Q210Q 0.03 TCGA-J4-A83L-01 2 125262060 125262060 G T CNTNAP5 Silent p.L417L 0.12 TCGA-J4-A83L-01 2 198267491 198267491 C G SF3B1 Missense_Mutation p.E622D 0.11 deleterious(0.05) benign(0.109) TCGA-J4-A83L-01 3 39093536 39093536 A G WDR48 Missense_Mutation p.Q7R 0.25 tolerated(0.53) benign(0.022) TCGA-J4-A83L-01 3 46723007 46723007 A C ALS2CL Missense_Mutation p.C419W 0.13 deleterious(0.02) possibly_damaging(0.838) TCGA-J4-A83L-01 5 24509761 24509761 C G CDH10 Silent p.L390L 0.20 TCGA-J4-A83L-01 6 153043043 153043043 C A MYCT1 Missense_Mutation p.N121K 0.05 deleterious(0.03) benign(0.313) TCGA-J4-A83L-01 6 33245516 33245516 C G B3GALT4 Missense_Mutation p.T107R 0.11 deleterious(0) probably_damaging(0.994) TCGA-J4-A83L-01 6 75887568 75887568 C G COL12A1 Missense_Mutation p.V750L 0.05 probably_damaging(0.997) TCGA-J4-A83L-01 7 100779051 100779051 C T SERPINE1 Silent p.N352N 0.09 TCGA-J4-A83L-01 7 151836813 151836813 T - KMT2C Frame_Shift_Del p.T4803Lfs*7 0.08 TCGA-J4-A83L-01 8 23002139 23002139 G A TNFRSF10D Missense_Mutation p.R260W 0.06 tolerated(0.19) benign(0.002) TCGA-J4-A83L-01 9 32408558 32408558 A G ACO1 Missense_Mutation p.K105E 0.10 tolerated(0.4) benign(0.002) TCGA-J4-A83M-01 10 31815612 31815612 A G ZEB1 Missense_Mutation p.H933R 0.26 deleterious(0) possibly_damaging(0.589) TCGA-J4-A83M-01 11 123900402 123900402 C T OR10G8 Missense_Mutation p.L25F 0.25 tolerated(0.17) benign(0.242) TCGA-J4-A83M-01 11 18541081 18541081 C T TSG101 Missense_Mutation p.V38I 0.33 tolerated(0.18) benign(0.001) TCGA-J4-A83M-01 11 26586956 26586956 A G MUC15 Silent p.T177T 0.20 TCGA-J4-A83M-01 11 35515649 35515649 T A PAMR1 Missense_Mutation p.H82L 0.10 deleterious(0) probably_damaging(0.999) TCGA-J4-A83M-01 11 62296740 62296740 T A AHNAK Missense_Mutation p.M1717L 0.03 benign(0.018) TCGA-J4-A83M-01 11 76257110 76257110 T C C11orf30 Silent p.T1181T 0.48 TCGA-J4-A83M-01 11 92543011 92543011 G A FAT3 Missense_Mutation p.E3084K 0.16 possibly_damaging(0.812) TCGA-J4-A83M-01 12 56679800 56679800 T C CS Missense_Mutation p.K34R 0.13 tolerated(0.14) benign(0.041) TCGA-J4-A83M-01 12 8758040 8758040 C T AICDA Silent p.S66S 0.06 TCGA-J4-A83M-01 12 94641683 94641683 C A PLXNC1 Missense_Mutation p.S798Y 0.05 tolerated(0.06) benign(0.023) TCGA-J4-A83M-01 13 113772752 113772752 C T F7 Silent p.D277D 0.23 TCGA-J4-A83M-01 14 105239420 105239420 C A AKT1 Missense_Mutation p.D323Y 0.09 deleterious(0) probably_damaging(0.965) TCGA-J4-A83M-01 16 23632759 23632759 T C PALB2 Missense_Mutation p.I1013V 0.08 tolerated(0.63) benign(0.038) TCGA-J4-A83M-01 16 30616438 30616438 C T ZNF689 Missense_Mutation p.R217H 0.25 tolerated(0.16) possibly_damaging(0.815) TCGA-J4-A83M-01 17 32614638 32614638 G A CCL11 Missense_Mutation p.D75N 0.16 tolerated(0.07) benign(0.322) TCGA-J4-A83M-01 17 35536315 35536315 A T ACACA Silent p.T1655T 0.21 TCGA-J4-A83M-01 17 76510934 76510934 C T DNAH17 Silent p.T1341T 0.23 TCGA-J4-A83M-01 18 21330980 21330980 T C LAMA3 Silent p.R261R 0.04 TCGA-J4-A83M-01 19 5790154 5790154 T C DUS3L Silent p.L97L 0.27 TCGA-J4-A83M-01 1 159002391 159002391 T A IFI16 Nonsense_Mutation p.Y413* 0.24 TCGA-J4-A83M-01 1 19480294 19480294 G A UBR4 Nonsense_Mutation p.Q2200* 0.28 TCGA-J4-A83M-01 1 206320204 206320204 C T CTSE Missense_Mutation p.T116M 0.07 tolerated(0.19) benign(0.015) TCGA-J4-A83M-01 1 3422030 3422030 C T MEGF6 Missense_Mutation p.S670N 0.14 deleterious(0.03) benign(0.339) TCGA-J4-A83M-01 1 39853894 39853894 G T MACF1 Missense_Mutation p.R3065L 0.21 possibly_damaging(0.755) TCGA-J4-A83M-01 1 44463552 44463552 C T SLC6A9 Missense_Mutation p.R634H 0.30 tolerated(0.53) benign(0.027) TCGA-J4-A83M-01 1 99772185 99772185 G A LPPR4 Silent p.P637P 0.25 TCGA-J4-A83M-01 22 20937036 20937036 T A MED15 Splice_Site p.X470_splice 0.09 TCGA-J4-A83M-01 2 84518075 84518075 G A FUNDC2P2 RNA 0.27 TCGA-J4-A83M-01 2 89265876 89265876 C T IGKV1-6 Missense_Mutation p.G86S 0.04 deleterious(0.01) possibly_damaging(0.669) TCGA-J4-A83M-01 3 58279458 58279458 T G ABHD6 Missense_Mutation p.V327G 0.21 tolerated(0.41) benign(0.004) TCGA-J4-A83M-01 5 112197007 112197007 C G SRP19 5'UTR 0.09 TCGA-J4-A83M-01 5 143853387 143853387 G T KCTD16 Missense_Mutation p.V333L 0.06 tolerated(0.36) probably_damaging(0.988) TCGA-J4-A83M-01 5 33658389 33658389 A T ADAMTS12 Missense_Mutation p.S364T 0.36 deleterious(0) probably_damaging(1) TCGA-J4-A83M-01 5 71752252 71752252 G A ZNF366 Silent p.D501D 0.28 TCGA-J4-A83M-01 7 31920468 31920468 C T PDE1C Missense_Mutation p.R105Q 0.09 deleterious(0) probably_damaging(0.97) TCGA-J4-A83M-01 7 76885704 76885704 G T CCDC146 Nonsense_Mutation p.E188* 0.18 TCGA-J4-A83M-01 7 82580216 82580216 G A PCLO Missense_Mutation p.R3230C 0.27 unknown(0) TCGA-J4-A83M-01 7 94996690 94996690 G T PON3 Missense_Mutation p.H160N 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-J4-A83M-01 8 95952206 95952206 T C TP53INP1 Missense_Mutation p.M119V 0.17 deleterious(0.01) benign(0.253) TCGA-J4-A83M-01 9 69238296 69238296 A C CBWD6 Missense_Mutation p.I199S 0.07 deleterious(0) benign(0.261) TCGA-J4-A83N-01 10 102257878 102257878 C A SEC31B Missense_Mutation p.D591Y 0.30 deleterious(0) probably_damaging(0.992) TCGA-J4-A83N-01 10 48388461 48388461 C T RBP3 Missense_Mutation p.R806H 0.21 tolerated(0.51) possibly_damaging(0.812) TCGA-J4-A83N-01 11 32697164 32697164 T - CCDC73 Frame_Shift_Del p.R198Dfs*5 0.30 TCGA-J4-A83N-01 14 106092377 106092377 G A IGHG4 Silent p.F9F 0.33 TCGA-J4-A83N-01 17 61744336 61744336 G T MAP3K3 Missense_Mutation p.V171L 0.07 tolerated(0.76) benign(0.002) TCGA-J4-A83N-01 19 54656631 54656631 G A CNOT3 Silent p.P644P 0.09 TCGA-J4-A83N-01 1 158064805 158064805 G A KIRREL Silent p.A723A 0.19 TCGA-J4-A83N-01 1 206902130 206902130 C A MAPKAPK2 Silent p.R119R 0.26 TCGA-J4-A83N-01 1 70484494 70484494 T C LRRC7 Silent p.G433G 0.22 TCGA-J4-A83N-01 20 30681780 30681780 G A HCK Missense_Mutation p.A403T 0.42 deleterious(0) probably_damaging(0.936) TCGA-J4-A83N-01 20 43560904 43560904 A G PABPC1L Intron 0.60 TCGA-J4-A83N-01 20 5556578 5556578 T C GPCPD1 Missense_Mutation p.H251R 0.29 deleterious(0.02) benign(0.018) TCGA-J4-A83N-01 2 226378223 226378223 T C NYAP2 Missense_Mutation p.S120P 0.09 deleterious(0) benign(0.382) TCGA-J4-A83N-01 2 241658545 241658545 C T KIF1A Missense_Mutation p.V1698M 0.26 deleterious(0) probably_damaging(0.961) TCGA-J4-A83N-01 2 31604515 31604515 C T XDH Silent p.L372L 0.18 TCGA-J4-A83N-01 4 155719382 155719382 T G RBM46 Missense_Mutation p.Y191D 0.31 deleterious(0) probably_damaging(0.998) TCGA-J4-A83N-01 5 138163328 138163328 A G CTNNA1 Missense_Mutation p.D328G 0.07 tolerated(0.07) benign(0.388) TCGA-J4-A83N-01 5 140255780 140255780 G A PCDHA12 Silent p.A241A 0.09 TCGA-J4-A83N-01 6 121604993 121604993 C T TBC1D32 Missense_Mutation p.C479Y 0.15 tolerated(1) benign(0.007) TCGA-J4-A83N-01 6 159046201 159046201 G A TMEM181 Silent p.V477V 0.05 TCGA-J4-A83N-01 6 165715296 165715296 C A C6orf118 Missense_Mutation p.R172L 0.26 tolerated(0.35) benign(0.042) TCGA-J4-A83N-01 7 142045528 142045528 T A TRBV4-2 Missense_Mutation p.M19K 0.19 deleterious(0.03) benign(0.201) TCGA-J4-A83N-01 8 55534032 55534032 C T RP1 Missense_Mutation p.A169V 0.30 tolerated(0.68) benign(0.004) TCGA-J4-A83N-01 8 68087551 68087551 C T CSPP1 Silent p.L992L 0.17 TCGA-J4-A83N-01 9 27202983 27202983 C T TEK Missense_Mutation p.A692V 0.06 tolerated(0.26) benign(0.005) TCGA-J4-AATV-01 10 97918507 97918507 C T ZNF518A RNA 0.10 TCGA-J4-AATV-01 16 27472773 27472773 G A GTF3C1 Silent p.D2076D 0.05 TCGA-J4-AATV-01 17 37985743 37985743 T G IKZF3 Splice_Site p.X21_splice 0.06 TCGA-J4-AATV-01 1 36181895 36181895 C A C1orf216 Nonsense_Mutation p.E10* 0.14 TCGA-J4-AATV-01 9 101014206 101014206 G A TBC1D2 Silent p.A124A 0.05 TCGA-J4-AATV-01 X 110494483 110494483 C A CAPN6 Missense_Mutation p.D309Y 0.08 deleterious(0) probably_damaging(0.988) TCGA-J4-AATZ-01 10 102732921 102732921 C G SEMA4G Missense_Mutation p.Q54E 0.47 tolerated(0.26) benign(0.046) TCGA-J4-AATZ-01 10 102732996 102732996 C T SEMA4G Missense_Mutation p.L79F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-J4-AATZ-01 10 75535527 75535527 C A FUT11 3'UTR 0.13 TCGA-J4-AATZ-01 11 3039171 3039171 T C CARS Missense_Mutation p.N548S 0.47 tolerated(0.09) benign(0.142) TCGA-J4-AATZ-01 11 92600067 92600067 G A FAT3 Missense_Mutation p.R3940Q 0.11 possibly_damaging(0.643) TCGA-J4-AATZ-01 12 110019342 110019342 G C MVK Missense_Mutation p.D172H 0.32 deleterious(0.04) benign(0.001) TCGA-J4-AATZ-01 12 117977676 117977676 G C KSR2 Missense_Mutation p.P512R 0.51 tolerated(0.35) possibly_damaging(0.837) TCGA-J4-AATZ-01 12 12629736 12629736 T A DUSP16 3'UTR 0.13 TCGA-J4-AATZ-01 14 35592592 35592592 T C KIAA0391 Silent p.S47S 0.09 TCGA-J4-AATZ-01 14 44975667 44975667 G T FSCB Missense_Mutation p.T175K 0.17 deleterious(0.02) possibly_damaging(0.736) TCGA-J4-AATZ-01 15 43621659 43621659 G C LCMT2 Silent p.A343A 0.25 TCGA-J4-AATZ-01 15 54586209 54586209 C G UNC13C Missense_Mutation p.T1312R 0.04 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-J4-AATZ-01 16 70866774 70866774 C T HYDIN Missense_Mutation p.V4626M 0.25 benign(0.003) TCGA-J4-AATZ-01 16 71482059 71482059 T A ZNF23 Missense_Mutation p.K623N 0.04 deleterious(0.02) probably_damaging(0.992) TCGA-J4-AATZ-01 16 8989539 8989539 T G USP7 Missense_Mutation p.E960A 0.09 tolerated(0.06) benign(0.036) TCGA-J4-AATZ-01 17 18025164 18025164 C A MYO15A Missense_Mutation p.T1017N 0.06 unknown(0) TCGA-J4-AATZ-01 17 42476811 42476814 TGAA AGAAT GPATCH8 Frame_Shift_Ins p.S878Ffs*2 0.29 TCGA-J4-AATZ-01 17 62818381 62818381 C T RNU7-115P 3'Flank 0.33 TCGA-J4-AATZ-01 18 33747151 33747151 G A ELP2 Missense_Mutation p.S746N 0.05 tolerated(0.2) benign(0.062) TCGA-J4-AATZ-01 18 50278598 50278598 A C DCC Missense_Mutation p.K89T 0.10 deleterious(0) possibly_damaging(0.5) TCGA-J4-AATZ-01 19 17343311 17343311 C T NR2F6 Silent p.L355L 0.44 TCGA-J4-AATZ-01 19 33140667 33140667 C G ANKRD27 Missense_Mutation p.S45T 0.09 tolerated(0.31) benign(0.002) TCGA-J4-AATZ-01 19 51021545 51021545 A G LRRC4B Silent p.G475G 0.25 TCGA-J4-AATZ-01 1 155169845 155169845 C G THBS3 Missense_Mutation p.D590H 0.40 deleterious(0) probably_damaging(0.999) TCGA-J4-AATZ-01 1 155173028 155173028 C T THBS3 Missense_Mutation p.D248N 0.50 tolerated(0.49) benign(0.405) TCGA-J4-AATZ-01 1 171251205 171251205 G A FMO1 Missense_Mutation p.V306I 0.14 deleterious(0.04) benign(0.055) TCGA-J4-AATZ-01 1 196254839 196254839 A G KCNT2 Missense_Mutation p.F882S 0.20 deleterious(0) possibly_damaging(0.719) TCGA-J4-AATZ-01 1 220091654 220091654 C T SLC30A10 Missense_Mutation p.E301K 0.05 deleterious(0) probably_damaging(0.928) TCGA-J4-AATZ-01 20 62070978 62070978 G A KCNQ2 Silent p.I300I 0.47 TCGA-J4-AATZ-01 2 164467412 164467412 G C FIGN Missense_Mutation p.N310K 0.09 tolerated(0.21) benign(0.104) TCGA-J4-AATZ-01 2 27746165 27746165 A T GCKR Silent p.L579L 0.30 TCGA-J4-AATZ-01 2 64211107 64211107 T G VPS54 Silent p.P9P 0.32 TCGA-J4-AATZ-01 2 73316401 73316401 T C RAB11FIP5 Silent p.E158E 0.14 TCGA-J4-AATZ-01 3 40529533 40529533 C G ZNF619 Missense_Mutation p.S551C 0.33 tolerated_low_confidence(0.12) benign(0) TCGA-J4-AATZ-01 3 50214257 50214257 G A SEMA3F Silent p.P202P 0.07 TCGA-J4-AATZ-01 4 155237056 155237056 G T DCHS2 Missense_Mutation p.P1247T 0.42 deleterious(0) probably_damaging(1) TCGA-J4-AATZ-01 4 158255214 158255214 C T GRIA2 Missense_Mutation p.P403L 0.08 tolerated(0.68) benign(0.002) TCGA-J4-AATZ-01 5 132537700 132537700 T C FSTL4 Missense_Mutation p.H584R 0.09 tolerated(0.19) benign(0.018) TCGA-J4-AATZ-01 5 174156222 174156222 C T MSX2 Missense_Mutation p.T147M 0.38 deleterious(0) probably_damaging(1) TCGA-J4-AATZ-01 5 21842308 21842308 A T CDH12 Missense_Mutation p.L259H 0.07 deleterious(0) probably_damaging(1) TCGA-J4-AATZ-01 5 35014092 35014092 C G AGXT2 Missense_Mutation p.E366Q 0.43 deleterious(0.03) possibly_damaging(0.512) TCGA-J4-AATZ-01 6 150141592 150141592 A - LRP11 3'UTR 0.39 TCGA-J4-AATZ-01 6 86324853 86324853 C A SYNCRIP Missense_Mutation p.R498M 0.09 tolerated(0.17) unknown(0) TCGA-J4-AATZ-01 9 111976095 111976095 A G EPB41L4B Missense_Mutation p.L546P 0.26 tolerated(0.18) possibly_damaging(0.851) TCGA-J4-AATZ-01 9 115805369 115805369 G C ZFP37 Missense_Mutation p.T510S 0.43 tolerated(0.1) probably_damaging(0.995) TCGA-J4-AATZ-01 X 117959898 117959898 C T ZCCHC12 Missense_Mutation p.R231C 0.20 deleterious(0) probably_damaging(0.941) TCGA-J4-AATZ-01 X 14861809 14861809 C A FANCB Missense_Mutation p.K820N 0.15 deleterious(0) probably_damaging(0.971) TCGA-J4-AAU2-01 10 63851948 63851949 - CCTT ARID5B Frame_Shift_Ins p.K912Sfs*56 0.09 TCGA-J4-AAU2-01 11 113711419 113711419 C T USP28 Nonsense_Mutation p.W145* 0.35 TCGA-J4-AAU2-01 11 18765570 18765570 C T PTPN5 Missense_Mutation p.A92T 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.823) TCGA-J4-AAU2-01 11 6593109 6593109 A T DNHD1 Nonsense_Mutation p.K4719* 0.36 TCGA-J4-AAU2-01 12 49447072 49447073 - A KMT2D Frame_Shift_Ins p.C291Lfs*2 0.35 TCGA-J4-AAU2-01 12 52682215 52682215 T A KRT81 Missense_Mutation p.K222M 0.08 deleterious(0) possibly_damaging(0.73) TCGA-J4-AAU2-01 13 25075938 25075938 A G PARP4 Missense_Mutation p.L56P 0.10 deleterious(0) probably_damaging(0.997) TCGA-J4-AAU2-01 14 92958551 92958551 C T SLC24A4 Silent p.S561S 0.30 TCGA-J4-AAU2-01 17 10537029 10537029 T G MYH3 Missense_Mutation p.E1509A 0.38 deleterious(0) benign(0.136) TCGA-J4-AAU2-01 19 44833292 44833292 G C ZNF112 Missense_Mutation p.L346V 0.09 deleterious(0.03) benign(0.024) TCGA-J4-AAU2-01 19 55144611 55144611 G A LILRB1 Missense_Mutation p.R368H 0.47 tolerated(0.26) benign(0.002) TCGA-J4-AAU2-01 19 58772618 58772618 C T ZNF544 Missense_Mutation p.H216Y 0.36 tolerated(0.6) benign(0.004) TCGA-J4-AAU2-01 19 6732127 6732127 C T GPR108 Missense_Mutation p.E389K 0.12 deleterious(0.02) probably_damaging(0.931) TCGA-J4-AAU2-01 1 158747186 158747186 C A OR6N2 Missense_Mutation p.K80N 0.10 tolerated(0.12) probably_damaging(0.938) TCGA-J4-AAU2-01 1 169493105 169493105 A T F5 Silent p.G1942G 0.04 TCGA-J4-AAU2-01 20 30784514 30784514 T C PLAGL2 Missense_Mutation p.N411S 0.18 tolerated(1) possibly_damaging(0.899) TCGA-J4-AAU2-01 20 44641960 44641960 C T MMP9 Missense_Mutation p.T466M 0.06 deleterious(0.03) benign(0.049) TCGA-J4-AAU2-01 2 54856829 54856829 A G SPTBN1 Missense_Mutation p.K853R 0.11 tolerated(0.43) benign(0.044) TCGA-J4-AAU2-01 4 184595881 184595881 T C TRAPPC11 Silent p.F192F 0.06 TCGA-J4-AAU2-01 4 5691059 5691059 C T EVC2 Silent p.S177S 0.08 TCGA-J4-AAU2-01 4 5721043 5721043 C A EVC Silent p.S81S 0.44 TCGA-J4-AAU2-01 5 10414606 10414606 C G MARCH6 Missense_Mutation p.T653S 0.08 deleterious(0) probably_damaging(0.947) TCGA-J4-AAU2-01 6 4031995 4031995 G C PRPF4B Missense_Mutation p.E82Q 0.07 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-J4-AAU2-01 6 97000410 97000410 G A UFL1 Missense_Mutation p.E680K 0.33 tolerated(0.29) benign(0.24) TCGA-J4-AAU2-01 7 151879016 151879016 G - KMT2C Frame_Shift_Del p.Q1977Nfs*13 0.32 TCGA-J4-AAU2-01 8 38173511 38173511 G A WHSC1L1 Silent p.R635R 0.17 TCGA-J4-AAU2-01 8 3855453 3855453 T A CSMD1 Missense_Mutation p.I264F 0.33 probably_damaging(0.998) TCGA-J4-AAU2-01 8 3855496 3855496 G A CSMD1 Silent p.V249V 0.44 TCGA-J4-AAU2-01 8 73849053 73849053 C T KCNB2 Missense_Mutation p.S488L 0.09 deleterious(0) probably_damaging(0.975) TCGA-J4-AAU2-01 9 112151535 112151535 G A PTPN3 Missense_Mutation p.T744M 0.20 deleterious(0) probably_damaging(1) TCGA-J4-AAU2-01 9 137686952 137686952 C T COL5A1 Missense_Mutation p.R909W 0.17 unknown(0) TCGA-J4-AAU2-01 X 76711832 76711832 C A FGF16 Missense_Mutation p.A57D 0.15 possibly_damaging(0.481) TCGA-J4-AAU2-01 X 76845372 76845372 A C ATRX Missense_Mutation p.I2050S 0.63 benign(0.323) TCGA-J9-A52B-01 10 37422959 37422959 G T ANKRD30A Missense_Mutation p.A189S 0.34 deleterious(0) probably_damaging(0.918) TCGA-J9-A52B-01 11 113661436 113661436 G C ATF4P4 RNA 0.12 TCGA-J9-A52B-01 11 113661439 113661439 A C ATF4P4 RNA 0.12 TCGA-J9-A52B-01 11 113661475 113661475 G A ATF4P4 RNA 0.07 TCGA-J9-A52B-01 11 92702949 92702949 C T MTNR1B Missense_Mutation p.P20S 0.13 tolerated(0.11) benign(0.003) TCGA-J9-A52B-01 13 37401782 37401782 G A RFXAP Silent p.S237S 0.19 TCGA-J9-A52B-01 13 99907262 99907262 C T GPR18 Missense_Mutation p.V289I 0.19 deleterious(0.02) probably_damaging(0.996) TCGA-J9-A52B-01 15 100269696 100269696 G A LYSMD4 Nonsense_Mutation p.Q176* 0.26 TCGA-J9-A52B-01 15 23021406 23021406 G A NIPA2 5'UTR 0.35 TCGA-J9-A52B-01 15 77908223 77908223 G A LINGO1 Missense_Mutation p.A9V 0.40 tolerated_low_confidence(0.21) benign(0.038) TCGA-J9-A52B-01 16 30744630 30744630 C T SRCAP Missense_Mutation p.R2053W 0.25 probably_damaging(0.957) TCGA-J9-A52B-01 16 84516283 84516283 G A TLDC1 Missense_Mutation p.P331L 0.06 deleterious(0) probably_damaging(0.998) TCGA-J9-A52B-01 17 16843654 16843654 G A TNFRSF13B Missense_Mutation p.A206V 0.35 deleterious(0.04) possibly_damaging(0.894) TCGA-J9-A52B-01 17 18875037 18875037 C A FAM83G Missense_Mutation p.V703F 0.34 tolerated(0.15) benign(0.086) TCGA-J9-A52B-01 17 42271596 42271596 C T ATXN7L3 3'UTR 0.53 TCGA-J9-A52B-01 17 7578548 7578569 GGGAGTACTGTAGGAAGAGGAA - TP53 Splice_Site p.X126_splice 0.28 TCGA-J9-A52B-01 17 7811746 7811746 G T CHD3 Nonsense_Mutation p.E1786* 0.37 TCGA-J9-A52B-01 17 7942382 7942382 C A ALOX15B 5'UTR 0.11 TCGA-J9-A52B-01 17 8480573 8480573 C T MYH10 Missense_Mutation p.R205K 0.54 benign(0.011) TCGA-J9-A52B-01 19 12954360 12954360 G C MAST1 Missense_Mutation p.W89S 0.40 deleterious(0.01) probably_damaging(1) TCGA-J9-A52B-01 19 39995920 39995920 C T DLL3 Missense_Mutation p.R308W 0.40 deleterious(0) probably_damaging(1) TCGA-J9-A52B-01 19 4852140 4852141 TT - PLIN3 Frame_Shift_Del p.Q174Lfs*48 0.34 TCGA-J9-A52B-01 1 228433234 228433234 A G OBSCN Missense_Mutation p.K1293R 0.26 probably_damaging(0.941) TCGA-J9-A52B-01 1 24075567 24075567 G A TCEB3 Silent p.A70A 0.22 TCGA-J9-A52B-01 1 74649266 74649266 A C LRRIQ3 Missense_Mutation p.F35V 0.29 deleterious(0.03) possibly_damaging(0.59) TCGA-J9-A52B-01 1 8390702 8390702 C T SLC45A1 Silent p.G383G 0.40 TCGA-J9-A52B-01 21 22370829 22370829 C A NCAM2 5'UTR 0.48 TCGA-J9-A52B-01 22 39917951 39917951 C - ATF4 Frame_Shift_Del p.Q136Rfs*3 0.23 TCGA-J9-A52B-01 22 42608481 42608481 T A TCF20 Missense_Mutation p.N944I 0.23 benign(0.302) TCGA-J9-A52B-01 2 90248930 90248930 G C IGKV1D-43 Missense_Mutation p.R4T 0.13 deleterious(0.02) benign(0.045) TCGA-J9-A52B-01 2 96795571 96795571 C T ASTL Missense_Mutation p.R289H 0.18 tolerated_low_confidence(0.53) benign(0) TCGA-J9-A52B-01 3 113850057 113850057 C G DRD3 Missense_Mutation p.R305T 0.09 tolerated(0.07) possibly_damaging(0.697) TCGA-J9-A52B-01 4 100543853 100543853 G A MTTP Missense_Mutation p.E845K 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-J9-A52B-01 4 104065638 104065638 C G CENPE Silent p.T1665T 0.20 TCGA-J9-A52B-01 4 186318457 186318458 - T ANKRD37 Splice_Site p.X60_splice 0.17 TCGA-J9-A52B-01 5 140481893 140481893 G A PCDHB3 Missense_Mutation p.A554T 0.15 tolerated_low_confidence(0.39) benign(0.046) TCGA-J9-A52B-01 5 54771251 54771251 G T PPAP2A Intron 0.13 TCGA-J9-A52B-01 6 152651002 152651002 T G SYNE1 Missense_Mutation p.I4940L 0.33 benign(0.327) TCGA-J9-A52B-01 6 161560578 161560578 C G AGPAT4 Missense_Mutation p.W306C 0.19 deleterious(0) probably_damaging(0.977) TCGA-J9-A52B-01 6 97681831 97681831 C T MMS22L Missense_Mutation p.R403Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-J9-A52B-01 8 67971443 67971443 T A COPS5 Intron 0.14 TCGA-J9-A52B-01 8 77895775 77895775 G A PEX2 Nonsense_Mutation p.Q214* 0.12 TCGA-J9-A52B-01 9 113312165 113312165 C A SVEP1 Nonsense_Mutation p.E251* 0.21 TCGA-J9-A52B-01 X 125685925 125685925 C G DCAF12L1 Missense_Mutation p.D223H 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-J9-A52C-01 10 103343363 103343363 G A POLL Missense_Mutation p.R323W 0.22 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 10 105215431 105215431 G A CALHM1 Missense_Mutation p.T210M 0.21 deleterious(0) probably_damaging(0.963) TCGA-J9-A52C-01 10 115610038 115610038 G A DCLRE1A Missense_Mutation p.R276C 0.18 tolerated(0.44) benign(0.247) TCGA-J9-A52C-01 10 119044583 119044583 G A PDZD8 Missense_Mutation p.P554L 0.19 tolerated_low_confidence(0.34) benign(0.002) TCGA-J9-A52C-01 10 128974336 128974336 C T FAM196A Silent p.S108S 0.13 TCGA-J9-A52C-01 10 129676322 129676322 T C CLRN3 3'UTR 0.23 TCGA-J9-A52C-01 10 129910063 129910063 A T MKI67 Silent p.V702V 0.20 TCGA-J9-A52C-01 10 134621908 134621908 T G TTC40 3'UTR 0.17 TCGA-J9-A52C-01 10 134981778 134981778 G A KNDC1 Missense_Mutation p.V108I 0.06 deleterious(0.01) possibly_damaging(0.75) TCGA-J9-A52C-01 10 1405754 1405754 C T ADARB2 Silent p.A182A 0.14 TCGA-J9-A52C-01 10 16989253 16989253 G A CUBN Missense_Mutation p.R1775W 0.16 deleterious(0.03) probably_damaging(0.927) TCGA-J9-A52C-01 10 26455002 26455002 C T MYO3A Silent p.Y1002Y 0.16 TCGA-J9-A52C-01 10 30315489 30315489 C T KIAA1462 Silent p.L1196L 0.16 TCGA-J9-A52C-01 10 3180260 3180260 G A PITRM1 Missense_Mutation p.P1027L 0.17 tolerated(0.28) benign(0.004) TCGA-J9-A52C-01 10 60994140 60994140 A G PHYHIPL Missense_Mutation p.I61M 0.14 deleterious(0) probably_damaging(0.974) TCGA-J9-A52C-01 10 61819478 61819478 G A ANK3 Intron 0.09 TCGA-J9-A52C-01 10 72541754 72541754 C T TBATA Missense_Mutation p.R27H 0.16 tolerated_low_confidence(0.87) benign(0.001) TCGA-J9-A52C-01 10 73048739 73048739 A T UNC5B Missense_Mutation p.N364I 0.28 deleterious(0.05) benign(0) TCGA-J9-A52C-01 10 75557311 75557311 C T ZSWIM8 Missense_Mutation p.R1204C 0.20 tolerated(0.06) probably_damaging(0.997) TCGA-J9-A52C-01 10 75888897 75888897 G A AP3M1 Nonsense_Mutation p.R258* 0.18 TCGA-J9-A52C-01 10 76861673 76861673 G A DUSP13 Intron 0.24 TCGA-J9-A52C-01 10 88277682 88277682 G A WAPAL Missense_Mutation p.P49S 0.15 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-J9-A52C-01 10 88702895 88702895 G A MMRN2 Missense_Mutation p.A549V 0.30 tolerated(0.32) benign(0.003) TCGA-J9-A52C-01 11 107309880 107309880 C T CWF19L2 Silent p.P200P 0.30 TCGA-J9-A52C-01 11 113281374 113281374 C T DRD2 3'UTR 0.23 TCGA-J9-A52C-01 11 116718256 116718256 C T SIK3 Silent p.S1190S 0.18 TCGA-J9-A52C-01 11 117374650 117374650 C T DSCAML1 Missense_Mutation p.V817I 0.18 tolerated(0.16) benign(0.244) TCGA-J9-A52C-01 11 118986872 118986872 G A C2CD2L Missense_Mutation p.R677Q 0.25 deleterious(0) probably_damaging(0.967) TCGA-J9-A52C-01 11 119216273 119216273 G - MFRP Frame_Shift_Del p.N167Tfs*25 0.16 TCGA-J9-A52C-01 11 120744898 120744898 G A GRIK4 Missense_Mutation p.G344S 0.30 deleterious(0) benign(0.08) TCGA-J9-A52C-01 11 1256378 1256378 C T MUC5B Silent p.Y898Y 0.15 TCGA-J9-A52C-01 11 129734598 129734598 C T NFRKB 3'UTR 0.15 TCGA-J9-A52C-01 11 130010333 130010333 C T APLP2 Silent p.A638A 0.14 TCGA-J9-A52C-01 11 130059742 130059742 G A ST14 Silent p.P183P 0.19 TCGA-J9-A52C-01 11 14491012 14491012 C T COPB1 Missense_Mutation p.R612Q 0.19 deleterious(0) possibly_damaging(0.897) TCGA-J9-A52C-01 11 17438497 17438497 G A ABCC8 Silent p.S745S 0.10 TCGA-J9-A52C-01 11 33596305 33596305 A G KIAA1549L Missense_Mutation p.T1133A 0.13 tolerated(0.13) possibly_damaging(0.557) TCGA-J9-A52C-01 11 46917787 46917787 C A LRP4 Missense_Mutation p.S341I 0.19 deleterious(0.01) possibly_damaging(0.616) TCGA-J9-A52C-01 11 56143702 56143702 C A OR8U1 Silent p.A201A 0.12 TCGA-J9-A52C-01 11 56468308 56468308 T C OR9G1 Missense_Mutation p.C149R 0.07 deleterious(0.04) benign(0.021) TCGA-J9-A52C-01 11 57243663 57243663 T C RTN4RL2 Missense_Mutation p.L181P 0.20 deleterious(0) probably_damaging(0.997) TCGA-J9-A52C-01 11 58391921 58391921 C T CNTF Missense_Mutation p.R177C 0.15 deleterious(0) probably_damaging(0.998) TCGA-J9-A52C-01 11 58722740 58722740 G A GLYATL1 Silent p.T166T 0.10 TCGA-J9-A52C-01 11 64112271 64112271 G A CCDC88B Missense_Mutation p.R753H 0.18 deleterious(0.01) possibly_damaging(0.495) TCGA-J9-A52C-01 11 64877312 64877312 G A VPS51 Missense_Mutation p.D599N 0.18 tolerated(0.06) probably_damaging(1) TCGA-J9-A52C-01 11 65107961 65107961 C T DPF2 Silent p.T46T 0.16 TCGA-J9-A52C-01 11 65366866 65366866 G A MAP3K11 Silent p.R735R 0.23 TCGA-J9-A52C-01 11 65547172 65547172 C T AP5B1 Silent p.A264A 0.17 TCGA-J9-A52C-01 11 65635813 65635813 G A EFEMP2 Silent p.C309C 0.18 TCGA-J9-A52C-01 11 66260244 66260244 G A DPP3 Missense_Mutation p.S349N 0.16 tolerated(0.55) benign(0.002) TCGA-J9-A52C-01 11 66288860 66288860 G A BBS1 Intron 0.13 TCGA-J9-A52C-01 11 66468529 66468529 C T SPTBN2 Missense_Mutation p.R1014Q 0.15 deleterious(0) benign(0.353) TCGA-J9-A52C-01 11 68675744 68675744 C T IGHMBP2 Nonsense_Mutation p.R130* 0.14 TCGA-J9-A52C-01 11 77924841 77924841 C G USP35 Missense_Mutation p.F1013L 0.11 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-J9-A52C-01 11 7818171 7818171 C T OR5P2 Missense_Mutation p.E107K 0.08 deleterious(0) probably_damaging(0.953) TCGA-J9-A52C-01 11 792315 792315 T C SLC25A22 Missense_Mutation p.N244S 0.07 tolerated(0.09) benign(0.086) TCGA-J9-A52C-01 11 86106421 86106421 A C CCDC81 Silent p.R201R 0.17 TCGA-J9-A52C-01 11 865826 865829 GTGA - TSPAN4 Splice_Site p.X188_splice 0.15 TCGA-J9-A52C-01 11 9171679 9171679 T - DENND5A Frame_Shift_Del p.K895Sfs*7 0.10 TCGA-J9-A52C-01 11 9746375 9746375 T G SWAP70 Silent p.T195T 0.24 TCGA-J9-A52C-01 12 104142908 104142908 C T STAB2 Missense_Mutation p.H2138Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-J9-A52C-01 12 106632780 106632780 G A CKAP4 3'UTR 0.18 TCGA-J9-A52C-01 12 10750711 10750711 A C KLRAP1 RNA 0.14 TCGA-J9-A52C-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.17 TCGA-J9-A52C-01 12 109693958 109693958 G A ACACB Silent p.T2060T 0.10 TCGA-J9-A52C-01 12 112650410 112650411 GT - HECTD4 Frame_Shift_Del p.P2358Sfs*24 0.13 TCGA-J9-A52C-01 12 113645980 113645980 C T IQCD 5'UTR 0.11 TCGA-J9-A52C-01 12 118198839 118198839 G A KSR2 Silent p.R321R 0.18 TCGA-J9-A52C-01 12 120587427 120587427 G A GCN1L1 Missense_Mutation p.S1510L 0.20 probably_damaging(0.997) TCGA-J9-A52C-01 12 121747516 121747516 T G ANAPC5 Missense_Mutation p.K682Q 0.25 tolerated(0.8) benign(0.002) TCGA-J9-A52C-01 12 124422214 124422216 CTT - CCDC92 In_Frame_Del p.K129del 0.21 TCGA-J9-A52C-01 12 124422261 124422261 C T CCDC92 Missense_Mutation p.A114T 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-J9-A52C-01 12 124798868 124798868 C A FAM101A Missense_Mutation p.R69S 0.12 deleterious(0) possibly_damaging(0.644) TCGA-J9-A52C-01 12 18889199 18889199 A T PLCZ1 Missense_Mutation p.L31I 0.17 tolerated(0.27) possibly_damaging(0.637) TCGA-J9-A52C-01 12 31944698 31944699 CT - H3F3C Frame_Shift_Del p.R134Sfs*12 0.16 TCGA-J9-A52C-01 12 32458878 32458878 G T BICD1 Missense_Mutation p.G276V 0.20 tolerated(0.12) benign(0.099) TCGA-J9-A52C-01 12 40223918 40223918 C T SLC2A13 Missense_Mutation p.A478T 0.18 deleterious(0.02) benign(0.074) TCGA-J9-A52C-01 12 40653340 40653340 C T LRRK2 Missense_Mutation p.R493C 0.09 deleterious(0.05) benign(0.163) TCGA-J9-A52C-01 12 4479895 4479895 A G FGF23 Missense_Mutation p.Y124H 0.15 tolerated(0.07) possibly_damaging(0.893) TCGA-J9-A52C-01 12 49391305 49391305 C T DDN Missense_Mutation p.V452I 0.13 tolerated_low_confidence(0.34) benign(0.012) TCGA-J9-A52C-01 12 49434174 49434174 C A KMT2D Missense_Mutation p.R2460L 0.18 probably_damaging(0.994) TCGA-J9-A52C-01 12 49442461 49442462 TC - KMT2D Frame_Shift_Del p.D1371Qfs*60 0.15 TCGA-J9-A52C-01 12 49579134 49579134 G A TUBA1A Missense_Mutation p.R339C 0.12 deleterious_low_confidence(0.03) probably_damaging(0.933) TCGA-J9-A52C-01 12 51064979 51064979 G A DIP2B Silent p.S146S 0.09 TCGA-J9-A52C-01 12 52567427 52567427 G A KRT80 Missense_Mutation p.A263V 0.18 deleterious(0.04) benign(0.181) TCGA-J9-A52C-01 12 52574746 52574746 A G KRT80 Missense_Mutation p.Y171H 0.20 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 12 53086233 53086233 G A KRT77 Missense_Mutation p.R467C 0.17 deleterious(0.04) benign(0.02) TCGA-J9-A52C-01 12 53663786 53663786 C T ESPL1 Missense_Mutation p.R354C 0.15 tolerated(0.24) benign(0.001) TCGA-J9-A52C-01 12 56297223 56297223 G A WIBG Missense_Mutation p.R27C 0.14 deleterious(0) probably_damaging(0.997) TCGA-J9-A52C-01 12 56487295 56487295 C T ERBB3 Nonsense_Mutation p.R481* 0.14 TCGA-J9-A52C-01 12 56575853 56575853 A G SMARCC2 Missense_Mutation p.W215R 0.18 deleterious(0) possibly_damaging(0.608) TCGA-J9-A52C-01 12 56575860 56575860 G A SMARCC2 Silent p.Y212Y 0.14 TCGA-J9-A52C-01 12 57588369 57588369 G A LRP1 Missense_Mutation p.R2693H 0.14 benign(0.346) TCGA-J9-A52C-01 12 58022502 58022502 G A B4GALNT1 Silent p.F332F 0.13 TCGA-J9-A52C-01 12 58022927 58022927 G A B4GALNT1 Missense_Mutation p.R239W 0.21 deleterious(0.03) possibly_damaging(0.517) TCGA-J9-A52C-01 12 6125268 6125268 G A VWF Silent p.A1814A 0.26 TCGA-J9-A52C-01 12 6438670 6438670 G A TNFRSF1A Silent p.N392N 0.21 TCGA-J9-A52C-01 12 6579696 6579697 - T VAMP1 Frame_Shift_Ins p.M1? 0.13 TCGA-J9-A52C-01 12 70004150 70004150 G A LRRC10 Missense_Mutation p.R157C 0.15 tolerated(0.07) benign(0.035) TCGA-J9-A52C-01 12 70070800 70070800 G A BEST3 Missense_Mutation p.R255C 0.14 deleterious(0) probably_damaging(0.97) TCGA-J9-A52C-01 12 97078469 97078469 G A C12orf55 Silent p.A1920A 0.18 TCGA-J9-A52C-01 13 103504506 103504506 C T BIVM-ERCC5 Missense_Mutation p.R469W 0.28 deleterious(0) benign(0.005) TCGA-J9-A52C-01 13 114504726 114504726 G A TMEM255B Missense_Mutation p.V204I 0.25 tolerated(1) benign(0.036) TCGA-J9-A52C-01 13 115004789 115004789 C T CDC16 Intron 0.10 TCGA-J9-A52C-01 13 23908934 23908934 A - SACS Frame_Shift_Del p.F3027Lfs*25 0.12 TCGA-J9-A52C-01 13 23909565 23909565 G A SACS Missense_Mutation p.T2817M 0.11 possibly_damaging(0.816) TCGA-J9-A52C-01 13 23913031 23913033 TAC - SACS In_Frame_Del p.S1661del 0.18 TCGA-J9-A52C-01 13 39264245 39264247 CAT - FREM2 In_Frame_Del p.H923del 0.13 TCGA-J9-A52C-01 13 67801068 67801068 G A PCDH9 Missense_Mutation p.A502V 0.13 deleterious(0) possibly_damaging(0.845) TCGA-J9-A52C-01 13 73636372 73636372 T C KLF5 Missense_Mutation p.L212P 0.15 deleterious(0.01) benign(0.271) TCGA-J9-A52C-01 13 86370664 86370664 G A SLITRK6 5'UTR 0.21 TCGA-J9-A52C-01 13 95121166 95121166 G A DCT Silent p.G143G 0.19 TCGA-J9-A52C-01 13 96543151 96543151 T C UGGT2 Missense_Mutation p.T975A 0.13 deleterious(0) possibly_damaging(0.812) TCGA-J9-A52C-01 14 100123403 100123403 C T HHIPL1 Silent p.D323D 0.15 TCGA-J9-A52C-01 14 101447365 101447365 C T SNORD114-20 RNA 0.14 TCGA-J9-A52C-01 14 102808016 102808016 G - ZNF839 Frame_Shift_Del p.P764Lfs*17 0.15 TCGA-J9-A52C-01 14 104571684 104571684 G - ASPG Frame_Shift_Del p.E359Rfs*2 0.20 TCGA-J9-A52C-01 14 105639420 105639420 C T NUDT14 Missense_Mutation p.G203S 0.08 tolerated(0.12) benign(0.411) TCGA-J9-A52C-01 14 20295816 20295816 A G OR4N2 Missense_Mutation p.D70G 0.16 deleterious(0.02) possibly_damaging(0.834) TCGA-J9-A52C-01 14 22694893 22694893 C T TRAV36DV7 Silent p.S28S 0.12 TCGA-J9-A52C-01 14 23868103 23868103 T G MYH6 Missense_Mutation p.E575D 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-J9-A52C-01 14 24031220 24031220 G A AP1G2 Nonsense_Mutation p.Q562* 0.24 TCGA-J9-A52C-01 14 24545427 24545427 C T CPNE6 Nonsense_Mutation p.R332* 0.23 TCGA-J9-A52C-01 14 24877090 24877090 C A NYNRIN Missense_Mutation p.L72M 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-J9-A52C-01 14 39623467 39623467 C T TRAPPC6B Missense_Mutation p.R100H 0.25 tolerated(0.07) possibly_damaging(0.51) TCGA-J9-A52C-01 14 52481974 52481974 C T NID2 Silent p.P1016P 0.15 TCGA-J9-A52C-01 14 55818654 55818654 G - FBXO34 Frame_Shift_Del p.G517Vfs*68 0.16 TCGA-J9-A52C-01 14 61924008 61924008 C T PRKCH Nonsense_Mutation p.R359* 0.14 TCGA-J9-A52C-01 14 62200950 62200950 T C HIF1A Silent p.Y349Y 0.19 TCGA-J9-A52C-01 14 65237622 65237622 C T SPTB Missense_Mutation p.E1927K 0.14 tolerated(0.55) possibly_damaging(0.518) TCGA-J9-A52C-01 14 65260131 65260131 G A SPTB Silent p.G750G 0.15 TCGA-J9-A52C-01 14 68232984 68232984 C T ZFYVE26 Missense_Mutation p.V1991I 0.23 deleterious(0.01) possibly_damaging(0.512) TCGA-J9-A52C-01 14 70420167 70420167 G A SMOC1 Missense_Mutation p.R99Q 0.22 tolerated(0.06) probably_damaging(0.996) TCGA-J9-A52C-01 14 70634985 70634985 G A SLC8A3 Missense_Mutation p.S52L 0.14 tolerated(0.31) benign(0.003) TCGA-J9-A52C-01 14 74824199 74824199 C - VRTN Frame_Shift_Del p.P239Lfs*136 0.09 TCGA-J9-A52C-01 14 76241900 76241900 G A TTLL5 Missense_Mutation p.R737Q 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-J9-A52C-01 14 77808302 77808303 CT - TMED8 Frame_Shift_Del p.G264Lfs*30 0.26 TCGA-J9-A52C-01 14 86089434 86089434 G A FLRT2 Missense_Mutation p.A526T 0.13 tolerated(0.66) benign(0.003) TCGA-J9-A52C-01 14 90754822 90754822 G A NRDE2 Missense_Mutation p.T966M 0.13 deleterious(0.02) possibly_damaging(0.557) TCGA-J9-A52C-01 14 93708993 93708993 A G BTBD7 Missense_Mutation p.Y1009H 0.17 tolerated_low_confidence(0.09) benign(0.123) TCGA-J9-A52C-01 14 95034589 95034589 C T SERPINA4 Silent p.S349S 0.11 TCGA-J9-A52C-01 15 101528929 101528929 C T LRRK1 Missense_Mutation p.T175M 0.17 deleterious(0.04) benign(0.149) TCGA-J9-A52C-01 15 22382965 22382965 C T OR4N4 Missense_Mutation p.R165C 0.18 tolerated(0.07) benign(0.032) TCGA-J9-A52C-01 15 34150103 34150103 C T RYR3 Silent p.D4710D 0.15 TCGA-J9-A52C-01 15 34396266 34396266 G A PGBD4 Missense_Mutation p.D512N 0.12 tolerated(0.16) benign(0.03) TCGA-J9-A52C-01 15 41813295 41813295 G A RPAP1 Missense_Mutation p.S1030L 0.14 tolerated(0.21) benign(0.295) TCGA-J9-A52C-01 15 42132808 42132808 A G PLA2G4B Missense_Mutation p.S288G 0.25 deleterious(0) benign(0.037) TCGA-J9-A52C-01 15 43708462 43708462 C T TP53BP1 Missense_Mutation p.A1612T 0.15 deleterious(0.03) benign(0.287) TCGA-J9-A52C-01 15 52664400 52664400 C T MYO5A Missense_Mutation p.R913H 0.25 deleterious(0) possibly_damaging(0.548) TCGA-J9-A52C-01 15 55621921 55621922 - T PIGB Frame_Shift_Ins p.C177Lfs*79 0.15 TCGA-J9-A52C-01 15 64418402 64418402 C T SNX1 Missense_Mutation p.P212L 0.19 deleterious(0) probably_damaging(0.983) TCGA-J9-A52C-01 15 72455746 72455746 C T GRAMD2 Missense_Mutation p.A273T 0.06 tolerated(0.37) benign(0.005) TCGA-J9-A52C-01 15 74948199 74948199 C T EDC3 Missense_Mutation p.R232H 0.18 tolerated(0.19) possibly_damaging(0.899) TCGA-J9-A52C-01 15 75047381 75047381 C T CYP1A2 Silent p.H501H 0.24 TCGA-J9-A52C-01 15 88423505 88423505 G A NTRK3 Missense_Mutation p.T777M 0.15 deleterious(0) benign(0.046) TCGA-J9-A52C-01 15 89453092 89453092 G A MFGE8 Nonsense_Mutation p.R46* 0.12 TCGA-J9-A52C-01 15 89760443 89760443 G A RLBP1 Missense_Mutation p.A85V 0.14 tolerated(0.25) benign(0.195) TCGA-J9-A52C-01 15 91433508 91433508 G A FES Silent p.S412S 0.14 TCGA-J9-A52C-01 15 91769602 91769602 G A SV2B Missense_Mutation p.E37K 0.17 deleterious(0) probably_damaging(0.95) TCGA-J9-A52C-01 15 93595350 93595350 G A RGMA Missense_Mutation p.T181I 0.14 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 16 108437 108437 C T RHBDF1 Missense_Mutation p.V824I 0.12 tolerated(0.54) benign(0.004) TCGA-J9-A52C-01 16 11369998 11369998 C T PRM2 Missense_Mutation p.R77H 0.20 deleterious_low_confidence(0) unknown(0) TCGA-J9-A52C-01 16 136847 136847 G A NPRL3 Missense_Mutation p.R522C 0.26 tolerated(0.07) possibly_damaging(0.721) TCGA-J9-A52C-01 16 1536525 1536525 G A PTX4 Silent p.V279V 0.19 TCGA-J9-A52C-01 16 1716527 1716527 G A CRAMP1L Missense_Mutation p.E988K 0.12 tolerated(0.62) benign(0.005) TCGA-J9-A52C-01 16 17221564 17221564 C T XYLT1 Missense_Mutation p.A728T 0.16 tolerated(0.52) benign(0.28) TCGA-J9-A52C-01 16 1826215 1826215 T A EME2 Missense_Mutation p.D372E 0.14 tolerated(0.27) benign(0.125) TCGA-J9-A52C-01 16 19126687 19126687 C T ITPRIPL2 Missense_Mutation p.R302C 0.12 deleterious(0.01) probably_damaging(0.973) TCGA-J9-A52C-01 16 2030958 2030958 G A NOXO1 Silent p.D43D 0.27 TCGA-J9-A52C-01 16 23712400 23712400 G A ERN2 Silent p.S461S 0.18 TCGA-J9-A52C-01 16 27689214 27689214 C T KIAA0556 Silent p.G235G 0.17 TCGA-J9-A52C-01 16 28620207 28620207 G A SULT1A1 Intron 0.11 TCGA-J9-A52C-01 16 29884628 29884628 G A SEZ6L2 Silent p.G807G 0.19 TCGA-J9-A52C-01 16 3727584 3727594 AGTAGAAACCC - TRAP1 Frame_Shift_Del p.G204Sfs*6 0.11 TCGA-J9-A52C-01 16 3781218 3781218 G A CREBBP Missense_Mutation p.T1716M 0.16 unknown(0) TCGA-J9-A52C-01 16 46638334 46638334 A G SHCBP1 Silent p.L243L 0.20 TCGA-J9-A52C-01 16 47630341 47630341 A T PHKB Missense_Mutation p.K421I 0.07 deleterious(0) possibly_damaging(0.71) TCGA-J9-A52C-01 16 4910928 4910928 C T UBN1 Missense_Mutation p.T312M 0.17 tolerated(0.09) possibly_damaging(0.808) TCGA-J9-A52C-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.18 TCGA-J9-A52C-01 16 57447847 57447847 G A CCL17 Translation_Start_Site p.M1? 0.31 deleterious(0) unknown(0) TCGA-J9-A52C-01 16 58615359 58615359 G A CNOT1 Missense_Mutation p.R369C 0.14 deleterious(0) possibly_damaging(0.517) TCGA-J9-A52C-01 16 602413 602413 C T CAPN15 Missense_Mutation p.R874C 0.11 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 16 630925 630925 C T PIGQ Missense_Mutation p.P495L 0.15 deleterious(0) probably_damaging(0.982) TCGA-J9-A52C-01 16 66852502 66852502 G A NAE1 Nonsense_Mutation p.R184* 0.12 TCGA-J9-A52C-01 16 66946460 66946460 C T CDH16 Missense_Mutation p.E436K 0.24 tolerated(0.14) benign(0.166) TCGA-J9-A52C-01 16 67241597 67241597 C T LRRC29 Missense_Mutation p.A195T 0.13 tolerated(0.21) possibly_damaging(0.716) TCGA-J9-A52C-01 16 67709621 67709621 C T GFOD2 Missense_Mutation p.G199R 0.15 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 16 67981973 67981973 T C SLC12A4 Missense_Mutation p.Y615C 0.14 deleterious(0.04) probably_damaging(0.987) TCGA-J9-A52C-01 16 67984313 67984315 AAG - SLC12A4 In_Frame_Del p.F515del 0.34 TCGA-J9-A52C-01 16 72142749 72142749 C - DHX38 Frame_Shift_Del p.T1104Pfs*14 0.13 TCGA-J9-A52C-01 16 72157464 72157464 G A PMFBP1 Nonsense_Mutation p.Q892* 0.12 TCGA-J9-A52C-01 16 72829811 72829811 A G ZFHX3 Missense_Mutation p.L2257S 0.13 probably_damaging(0.996) TCGA-J9-A52C-01 16 72991758 72991758 C - ZFHX3 Frame_Shift_Del p.E763Sfs*61 0.25 TCGA-J9-A52C-01 16 75512471 75512471 C T CHST6 3'UTR 0.23 TCGA-J9-A52C-01 16 75563937 75563937 C T CHST5 Missense_Mutation p.D116N 0.17 deleterious(0.04) probably_damaging(1) TCGA-J9-A52C-01 16 77401347 77401347 G A ADAMTS18 Missense_Mutation p.R257C 0.13 deleterious(0.03) probably_damaging(0.985) TCGA-J9-A52C-01 16 775122 775122 C T CCDC78 Silent p.A172A 0.15 TCGA-J9-A52C-01 16 84104352 84104352 G A MBTPS1 Silent p.N541N 0.20 TCGA-J9-A52C-01 16 84215231 84215231 G A TAF1C Missense_Mutation p.S358L 0.23 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 16 86613413 86613413 G A FOXL1 3'UTR 0.23 TCGA-J9-A52C-01 16 89337296 89337296 G A ANKRD11 Missense_Mutation p.R2579C 0.22 probably_damaging(0.999) TCGA-J9-A52C-01 16 89349355 89349356 - T ANKRD11 Frame_Shift_Ins p.E1199Rfs*5 0.13 TCGA-J9-A52C-01 16 89350061 89350061 G A ANKRD11 Silent p.D963D 0.19 TCGA-J9-A52C-01 17 10360835 10360835 T - MYH4 Frame_Shift_Del p.N600Tfs*5 0.10 TCGA-J9-A52C-01 17 15641312 15641313 AA - TBC1D26 Frame_Shift_Del p.R68Tfs*5 0.11 TCGA-J9-A52C-01 17 15973813 15973815 GTT - NCOR1 In_Frame_Del p.N1393del 0.22 TCGA-J9-A52C-01 17 18232643 18232643 G A SHMT1 Missense_Mutation p.R411C 0.14 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 17 18638608 18638608 C T TRIM16L Silent p.G294G 0.21 TCGA-J9-A52C-01 17 18855642 18855642 G A SLC5A10 Intron 0.27 TCGA-J9-A52C-01 17 27999103 27999103 G A SSH2 Missense_Mutation p.A193V 0.22 tolerated(0.3) benign(0) TCGA-J9-A52C-01 17 30625115 30625115 G T RHBDL3 Nonsense_Mutation p.E225* 0.12 TCGA-J9-A52C-01 17 32964315 32964315 G A TMEM132E Silent p.V673V 0.14 TCGA-J9-A52C-01 17 35345870 35345870 C T AATF Nonsense_Mutation p.R334* 0.09 TCGA-J9-A52C-01 17 36880921 36880921 C T MLLT6 Missense_Mutation p.R978W 0.09 deleterious(0) probably_damaging(0.945) TCGA-J9-A52C-01 17 36895857 36895857 C T PCGF2 Missense_Mutation p.R64Q 0.12 deleterious(0.03) benign(0.336) TCGA-J9-A52C-01 17 37564024 37564024 C T MED1 Missense_Mutation p.D1484N 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-J9-A52C-01 17 38249345 38249345 G A THRA Missense_Mutation p.V395I 0.08 tolerated_low_confidence(0.43) benign(0) TCGA-J9-A52C-01 17 38557133 38557133 C T TOP2A Missense_Mutation p.R878H 0.18 deleterious(0.04) benign(0.154) TCGA-J9-A52C-01 17 38711044 38711044 G A CCR7 Missense_Mutation p.R363C 0.17 deleterious(0) possibly_damaging(0.832) TCGA-J9-A52C-01 17 40474485 40474485 G A STAT3 Missense_Mutation p.P639L 0.17 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 17 4805274 4805274 C A CHRNE Missense_Mutation p.E151D 0.19 tolerated(0.22) probably_damaging(0.999) TCGA-J9-A52C-01 17 5041502 5041502 G A USP6 Missense_Mutation p.V338M 0.18 deleterious_low_confidence(0) possibly_damaging(0.623) TCGA-J9-A52C-01 17 54428180 54428181 - A ANKFN1 Frame_Shift_Ins p.H87Tfs*2 0.16 TCGA-J9-A52C-01 17 56688555 56688555 G A TEX14 Missense_Mutation p.A390V 0.17 deleterious(0.02) possibly_damaging(0.775) TCGA-J9-A52C-01 17 58120898 58120898 G A HEATR6 3'UTR 0.13 TCGA-J9-A52C-01 17 58700883 58700883 G A PPM1D Silent p.A158A 0.15 TCGA-J9-A52C-01 17 59560564 59560565 - C TBX4 Frame_Shift_Ins p.T444Hfs*29 0.10 TCGA-J9-A52C-01 17 63206629 63206629 G A RGS9 Missense_Mutation p.R438H 0.11 deleterious(0) probably_damaging(0.985) TCGA-J9-A52C-01 17 64637512 64637512 G A PRKCA Missense_Mutation p.G110R 0.14 tolerated(0.13) possibly_damaging(0.631) TCGA-J9-A52C-01 17 66526538 66526538 T G PRKAR1A Missense_Mutation p.I365S 0.19 deleterious(0) probably_damaging(0.995) TCGA-J9-A52C-01 17 7221199 7221199 G A NEURL4 Silent p.C1371C 0.13 TCGA-J9-A52C-01 17 72691174 72691174 C T CD300LF 3'UTR 0.20 TCGA-J9-A52C-01 17 7329864 7329864 T C C17orf74 Missense_Mutation p.L185P 0.14 tolerated(0.1) probably_damaging(0.955) TCGA-J9-A52C-01 17 73559543 73559543 C T LLGL2 Silent p.Y275Y 0.18 TCGA-J9-A52C-01 17 7405400 7405400 G A POLR2A Missense_Mutation p.R844H 0.14 probably_damaging(1) TCGA-J9-A52C-01 17 74392306 74392306 G A UBE2O Silent p.S904S 0.15 TCGA-J9-A52C-01 17 75199713 75199713 G A SEC14L1 Silent p.A357A 0.15 TCGA-J9-A52C-01 17 76045218 76045218 C T TNRC6C Silent p.G25G 0.21 TCGA-J9-A52C-01 17 7612511 7612511 C T EFNB3 Missense_Mutation p.R214W 0.20 deleterious(0.03) possibly_damaging(0.82) TCGA-J9-A52C-01 17 7612702 7612702 G - EFNB3 Frame_Shift_Del p.G279Vfs*15 0.16 TCGA-J9-A52C-01 17 76510888 76510888 G A DNAH17 Missense_Mutation p.R1357C 0.22 probably_damaging(1) TCGA-J9-A52C-01 17 76794479 76794479 G A USP36 Intron 0.12 TCGA-J9-A52C-01 17 78320969 78320969 G A RNF213 Missense_Mutation p.R2945H 0.18 benign(0.136) TCGA-J9-A52C-01 17 78357529 78357529 G A RNF213 Missense_Mutation p.R4708H 0.16 possibly_damaging(0.557) TCGA-J9-A52C-01 17 78363706 78363706 C T RNF213 Missense_Mutation p.R5092W 0.11 probably_damaging(0.993) TCGA-J9-A52C-01 17 79207242 79207242 G A ENTHD2 Silent p.H172H 0.14 TCGA-J9-A52C-01 17 80121119 80121119 C T CCDC57 Missense_Mutation p.R666K 0.18 deleterious(0.02) possibly_damaging(0.844) TCGA-J9-A52C-01 17 8108653 8108653 G A AURKB Missense_Mutation p.R248C 0.19 deleterious(0.02) benign(0.017) TCGA-J9-A52C-01 17 8138396 8138396 T C CTC1 Missense_Mutation p.K472E 0.07 tolerated(0.07) benign(0.033) TCGA-J9-A52C-01 17 915194 915194 G A ABR Missense_Mutation p.R665W 0.12 deleterious(0) probably_damaging(0.952) TCGA-J9-A52C-01 18 22806101 22806101 T A ZNF521 Missense_Mutation p.Y594F 0.19 tolerated_low_confidence(0.31) possibly_damaging(0.718) TCGA-J9-A52C-01 18 24442304 24442304 T C AQP4 Missense_Mutation p.N97D 0.19 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 18 3215102 3215102 G A MYOM1 Silent p.T40T 0.27 TCGA-J9-A52C-01 18 34340709 34340709 G A FHOD3 Missense_Mutation p.A1347T 0.17 tolerated(0.69) benign(0.01) TCGA-J9-A52C-01 18 3879678 3879678 G A DLGAP1 Missense_Mutation p.R131C 0.10 deleterious(0) probably_damaging(0.911) TCGA-J9-A52C-01 18 43481010 43481010 C T EPG5 Missense_Mutation p.A1533T 0.10 tolerated(0.47) benign(0) TCGA-J9-A52C-01 18 44549172 44549172 T C TCEB3CL Missense_Mutation p.Y376C 0.05 deleterious(0.01) probably_damaging(0.98) TCGA-J9-A52C-01 18 47769458 47769458 T C CCDC11 Missense_Mutation p.Y342C 0.15 deleterious(0) probably_damaging(0.983) TCGA-J9-A52C-01 18 47799780 47799780 G A MBD1 Missense_Mutation p.A503V 0.16 tolerated_low_confidence(0.34) benign(0.032) TCGA-J9-A52C-01 18 47808995 47808995 T C CXXC1 Missense_Mutation p.T651A 0.12 deleterious(0.02) probably_damaging(0.971) TCGA-J9-A52C-01 18 50994313 50994313 G A DCC Silent p.S1223S 0.21 TCGA-J9-A52C-01 18 51013172 51013172 G A DCC Missense_Mutation p.V1248M 0.20 deleterious(0.02) probably_damaging(0.981) TCGA-J9-A52C-01 18 55315748 55315748 G A ATP8B1 Missense_Mutation p.A1243V 0.20 deleterious(0.02) benign(0.175) TCGA-J9-A52C-01 18 56246941 56246941 A - ALPK2 Frame_Shift_Del p.L356Yfs*2 0.22 TCGA-J9-A52C-01 18 60021663 60021663 C - TNFRSF11A Frame_Shift_Del p.R110Gfs*73 0.27 TCGA-J9-A52C-01 18 61305232 61305232 C T SERPINB4 Silent p.T298T 0.10 TCGA-J9-A52C-01 18 6959468 6959468 G A LAMA1 Silent p.I2550I 0.17 TCGA-J9-A52C-01 18 74091250 74091250 G A ZNF516 Silent p.G940G 0.17 TCGA-J9-A52C-01 18 76755234 76755234 C T SALL3 Silent p.P1081P 0.22 TCGA-J9-A52C-01 18 8783876 8783876 G A SOGA2 Missense_Mutation p.A256T 0.11 tolerated(0.4) benign(0.003) TCGA-J9-A52C-01 19 1005552 1005552 G A GRIN3B Silent p.K684K 0.23 TCGA-J9-A52C-01 19 10799996 10799996 C T ILF3 3'UTR 0.14 TCGA-J9-A52C-01 19 10823682 10823682 T C QTRT1 Missense_Mutation p.L342P 0.21 tolerated(0.12) possibly_damaging(0.808) TCGA-J9-A52C-01 19 11224018 11224018 C T LDLR Silent p.S417S 0.15 TCGA-J9-A52C-01 19 12058329 12058329 G A ZNF700 Missense_Mutation p.G64E 0.12 deleterious(0.01) probably_damaging(0.975) TCGA-J9-A52C-01 19 1234615 1234615 C T C19orf26 Silent p.T194T 0.27 TCGA-J9-A52C-01 19 12540985 12540985 A G ZNF443 Silent p.H667H 0.19 TCGA-J9-A52C-01 19 12989582 12989582 G A DNASE2 Missense_Mutation p.P138L 0.17 tolerated(0.14) benign(0.015) TCGA-J9-A52C-01 19 13423524 13423524 G A CACNA1A Missense_Mutation p.R543W 0.15 probably_damaging(0.942) TCGA-J9-A52C-01 19 14157260 14157260 G A IL27RA Missense_Mutation p.R324H 0.05 tolerated(1) benign(0.002) TCGA-J9-A52C-01 19 14499287 14499287 G A CD97 Silent p.P16P 0.09 TCGA-J9-A52C-01 19 15535752 15535752 G A WIZ Silent p.G567G 0.27 TCGA-J9-A52C-01 19 15580623 15580623 G A PGLYRP2 Silent p.T487T 0.38 TCGA-J9-A52C-01 19 17322736 17322736 G A MYO9B 3'UTR 0.18 TCGA-J9-A52C-01 19 17943479 17943479 C T JAK3 Silent p.P843P 0.16 TCGA-J9-A52C-01 19 1880951 1880951 G A ABHD17A Silent p.G143G 0.10 TCGA-J9-A52C-01 19 18976421 18976421 G A UPF1 Missense_Mutation p.R1024H 0.14 tolerated(0.2) benign(0.189) TCGA-J9-A52C-01 19 19243195 19243195 C G TMEM161A Missense_Mutation p.V137L 0.10 tolerated(0.25) possibly_damaging(0.596) TCGA-J9-A52C-01 19 19312306 19312306 G T NR2C2AP 3'UTR 0.27 TCGA-J9-A52C-01 19 19414533 19414533 G A SUGP1 Missense_Mutation p.A221V 0.19 tolerated(0.54) benign(0.129) TCGA-J9-A52C-01 19 19616307 19616307 C T GATAD2A 3'UTR 0.17 TCGA-J9-A52C-01 19 2226857 2226857 C T DOT1L Missense_Mutation p.P1446L 0.15 tolerated_low_confidence(0.06) benign(0.242) TCGA-J9-A52C-01 19 23543822 23543822 A G ZNF91 Silent p.T653T 0.13 TCGA-J9-A52C-01 19 2732746 2732746 C T SLC39A3 3'UTR 0.15 TCGA-J9-A52C-01 19 35435346 35435347 TT - ZNF30 Frame_Shift_Del p.F494* 0.17 TCGA-J9-A52C-01 19 3728407 3728407 G A TJP3 Intron 0.27 TCGA-J9-A52C-01 19 40199855 40199855 C T LGALS14 Missense_Mutation p.R137C 0.19 tolerated(0.2) benign(0.022) TCGA-J9-A52C-01 19 41497314 41497314 G A CYP2B6 Missense_Mutation p.R35H 0.16 tolerated(0.14) possibly_damaging(0.765) TCGA-J9-A52C-01 19 41700463 41700463 C T CYP2S1 Silent p.Y64Y 0.12 TCGA-J9-A52C-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.15 TCGA-J9-A52C-01 19 44981521 44981521 T C ZNF180 Missense_Mutation p.S393G 0.09 deleterious(0.03) possibly_damaging(0.712) TCGA-J9-A52C-01 19 45888875 45888875 G A PPP1R13L Silent p.F731F 0.16 TCGA-J9-A52C-01 19 45895240 45895240 C A PPP1R13L Missense_Mutation p.E571D 0.16 tolerated(0.15) benign(0.217) TCGA-J9-A52C-01 19 47424502 47424502 T - ARHGAP35 Frame_Shift_Del p.Y859Ifs*28 0.17 TCGA-J9-A52C-01 19 47998881 47998881 C T NAPA Intron 0.20 TCGA-J9-A52C-01 19 48801323 48801323 A G CCDC114 Missense_Mutation p.L442P 0.19 deleterious(0.02) probably_damaging(0.989) TCGA-J9-A52C-01 19 48977182 48977182 G A CYTH2 Missense_Mutation p.R152H 0.20 deleterious(0.03) probably_damaging(0.964) TCGA-J9-A52C-01 19 50208490 50208490 G A CPT1C Missense_Mutation p.R300H 0.17 tolerated(0.07) probably_damaging(0.956) TCGA-J9-A52C-01 19 51329944 51329944 T C KLK15 Missense_Mutation p.Y184C 0.19 deleterious(0) probably_damaging(0.995) TCGA-J9-A52C-01 19 51628275 51628275 C T SIGLEC9 Missense_Mutation p.A15V 0.16 tolerated(0.19) benign(0) TCGA-J9-A52C-01 19 51890427 51890427 G A LIM2 Missense_Mutation p.R91W 0.20 tolerated_low_confidence(0.2) benign(0) TCGA-J9-A52C-01 19 52034107 52034107 G - SIGLEC6 Frame_Shift_Del p.I179Sfs*39 0.14 TCGA-J9-A52C-01 19 52091407 52091408 CT - ZNF175 Frame_Shift_Del p.T610* 0.12 TCGA-J9-A52C-01 19 5274309 5274309 C T PTPRS Silent p.S46S 0.23 TCGA-J9-A52C-01 19 52887682 52887682 T A ZNF880 Silent p.L283L 0.21 TCGA-J9-A52C-01 19 54466610 54466610 G A CACNG8 Missense_Mutation p.G72S 0.15 tolerated_low_confidence(0.28) probably_damaging(0.935) TCGA-J9-A52C-01 19 55086796 55086796 G A LILRA2 Silent p.Q243Q 0.13 TCGA-J9-A52C-01 19 55341682 55341682 G A KIR3DL1 Silent p.T429T 0.27 TCGA-J9-A52C-01 19 56459552 56459552 G A NLRP8 Missense_Mutation p.R95Q 0.13 tolerated(0.22) benign(0.234) TCGA-J9-A52C-01 19 57175886 57175886 G A ZNF835 Silent p.C227C 0.36 TCGA-J9-A52C-01 19 58005261 58005261 C T ZNF419 Nonsense_Mutation p.R447* 0.14 TCGA-J9-A52C-01 19 6190722 6190722 G A ACSBG2 Intron 0.33 TCGA-J9-A52C-01 19 6496044 6496044 G A TUBB4A Missense_Mutation p.R156C 0.20 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-J9-A52C-01 19 8612974 8612974 G A MYO1F Silent p.F405F 0.13 TCGA-J9-A52C-01 1 100346968 100346970 CTT - AGL In_Frame_Del p.L708del 0.14 TCGA-J9-A52C-01 1 108247644 108247644 G A VAV3 Silent p.H514H 0.19 TCGA-J9-A52C-01 1 109823608 109823608 C T PSRC1 Missense_Mutation p.R232H 0.25 deleterious_low_confidence(0.02) probably_damaging(0.93) TCGA-J9-A52C-01 1 110738255 110738255 C T SLC6A17 Missense_Mutation p.R514C 0.12 deleterious(0.03) probably_damaging(0.956) TCGA-J9-A52C-01 1 113246352 113246352 C T RHOC Missense_Mutation p.V24I 0.17 deleterious(0.03) benign(0.179) TCGA-J9-A52C-01 1 113666692 113666692 G A LRIG2 Missense_Mutation p.R1056Q 0.21 tolerated_low_confidence(0.53) benign(0.002) TCGA-J9-A52C-01 1 115110718 115110718 C A BCAS2 3'UTR 0.09 TCGA-J9-A52C-01 1 119427785 119427785 C T TBX15 Missense_Mutation p.S354N 0.09 tolerated(0.48) benign(0) TCGA-J9-A52C-01 1 120336715 120336715 T C REG4 3'UTR 0.15 TCGA-J9-A52C-01 1 12704657 12704657 C T AADACL4 Missense_Mutation p.T31M 0.14 deleterious(0.04) possibly_damaging(0.701) TCGA-J9-A52C-01 1 150297487 150297487 G A PRPF3 Silent p.T29T 0.19 TCGA-J9-A52C-01 1 151109506 151109506 G A SEMA6C Silent p.G267G 0.14 TCGA-J9-A52C-01 1 151234660 151234660 G A PSMD4 Missense_Mutation p.R17Q 0.15 deleterious(0.02) possibly_damaging(0.684) TCGA-J9-A52C-01 1 153920995 153920995 G T CRTC2 Missense_Mutation p.F600L 0.11 tolerated(1) benign(0) TCGA-J9-A52C-01 1 154557716 154557716 G A ADAR Silent p.D1140D 0.11 TCGA-J9-A52C-01 1 156105740 156105740 C T LMNA Missense_Mutation p.R329C 0.20 deleterious(0.02) probably_damaging(0.935) TCGA-J9-A52C-01 1 156937788 156937788 G A ARHGEF11 Silent p.T318T 0.14 TCGA-J9-A52C-01 1 161039354 161039354 C T ARHGAP30 Missense_Mutation p.D21N 0.20 deleterious(0.01) possibly_damaging(0.889) TCGA-J9-A52C-01 1 16270144 16270144 C T ZBTB17 Missense_Mutation p.R509Q 0.18 deleterious(0.01) benign(0.255) TCGA-J9-A52C-01 1 162729671 162729671 G A DDR2 Missense_Mutation p.G253S 0.24 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 1 16378897 16378897 G A CLCNKB Missense_Mutation p.R538H 0.13 tolerated(0.17) possibly_damaging(0.858) TCGA-J9-A52C-01 1 16534702 16534702 T C ARHGEF19 Missense_Mutation p.Y144C 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-J9-A52C-01 1 169798604 169798604 T G C1orf112 Intron 0.21 TCGA-J9-A52C-01 1 17418973 17418973 G A PADI2 Silent p.P195P 0.16 TCGA-J9-A52C-01 1 175372583 175372583 G A TNR Silent p.S223S 0.18 TCGA-J9-A52C-01 1 176526076 176526076 G A PAPPA2 Silent p.A206A 0.17 TCGA-J9-A52C-01 1 178490340 178490340 G A TEX35 Intron 0.15 TCGA-J9-A52C-01 1 180235547 180235547 C T LHX4 Missense_Mutation p.T90M 0.10 deleterious(0) possibly_damaging(0.891) TCGA-J9-A52C-01 1 182569617 182569617 G A RGS16 Missense_Mutation p.T140M 0.16 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 1 18809307 18809307 G T KLHDC7A Missense_Mutation p.R611L 0.09 deleterious(0) possibly_damaging(0.858) TCGA-J9-A52C-01 1 192779369 192779369 A - RGS2 Frame_Shift_Del p.S64Afs*25 0.13 TCGA-J9-A52C-01 1 196709822 196709824 AGA - CFH In_Frame_Del p.E954del 0.19 TCGA-J9-A52C-01 1 20005830 20005830 G A HTR6 Missense_Mutation p.R431Q 0.18 tolerated_low_confidence(0.72) benign(0.002) TCGA-J9-A52C-01 1 200143341 200143341 T C NR5A2 3'UTR 0.23 TCGA-J9-A52C-01 1 20021006 20021006 G A TMCO4 Missense_Mutation p.S474L 0.20 deleterious(0.01) possibly_damaging(0.632) TCGA-J9-A52C-01 1 200968581 200968581 C T KIF21B Missense_Mutation p.R594Q 0.17 tolerated(0.62) benign(0.002) TCGA-J9-A52C-01 1 201867493 201867493 C A LMOD1 3'UTR 0.22 TCGA-J9-A52C-01 1 202932250 202932250 T G CYB5R1 Missense_Mutation p.Q230P 0.15 deleterious(0.05) possibly_damaging(0.876) TCGA-J9-A52C-01 1 204409441 204409441 G A PIK3C2B Silent p.D1086D 0.14 TCGA-J9-A52C-01 1 204921196 204921196 G A NFASC Missense_Mutation p.R56H 0.16 deleterious(0) benign(0.425) TCGA-J9-A52C-01 1 205779319 205779319 C T SLC41A1 Missense_Mutation p.G84D 0.11 tolerated(0.61) benign(0.276) TCGA-J9-A52C-01 1 2105390 2105390 G T PRKCZ Missense_Mutation p.G447V 0.19 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 1 210796908 210796908 C T HHAT Silent p.H429H 0.15 TCGA-J9-A52C-01 1 211462719 211462719 T C RCOR3 Missense_Mutation p.L307S 0.18 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 1 214556764 214556764 C T PTPN14 Missense_Mutation p.D812N 0.11 tolerated(0.06) probably_damaging(0.998) TCGA-J9-A52C-01 1 21903985 21903985 C T ALPL Silent p.G473G 0.13 TCGA-J9-A52C-01 1 220253160 220253160 C T BPNT1 Missense_Mutation p.R10Q 0.10 deleterious(0.02) benign(0.385) TCGA-J9-A52C-01 1 22172692 22172692 G A HSPG2 Silent p.Y2791Y 0.16 TCGA-J9-A52C-01 1 225598067 225598067 C T LBR Missense_Mutation p.A414T 0.15 tolerated(0.55) benign(0.017) TCGA-J9-A52C-01 1 226551700 226551700 C T PARP1 Silent p.T910T 0.22 TCGA-J9-A52C-01 1 228487117 228487117 C T OBSCN Silent p.D4456D 0.17 TCGA-J9-A52C-01 1 231299693 231299693 C T TRIM67 Silent p.C326C 0.19 TCGA-J9-A52C-01 1 23219480 23219480 G A EPHB2 Missense_Mutation p.R511H 0.10 deleterious(0.04) probably_damaging(0.981) TCGA-J9-A52C-01 1 233190173 233190173 G A PCNXL2 Nonsense_Mutation p.Q1398* 0.11 TCGA-J9-A52C-01 1 23720487 23720487 C T TCEA3 Missense_Mutation p.R235Q 0.12 deleterious(0) benign(0.133) TCGA-J9-A52C-01 1 240370883 240370883 C T FMN2 Missense_Mutation p.P924L 0.25 unknown(0) TCGA-J9-A52C-01 1 24080607 24080609 GAA - TCEB3 In_Frame_Del p.E548del 0.15 TCGA-J9-A52C-01 1 26359747 26359747 A G EXTL1 Missense_Mutation p.T487A 0.10 tolerated(1) benign(0.005) TCGA-J9-A52C-01 1 27216198 27216198 T C GPN2 Silent p.Q130Q 0.17 TCGA-J9-A52C-01 1 29585178 29585178 G A PTPRU Missense_Mutation p.V123I 0.12 deleterious(0.02) possibly_damaging(0.88) TCGA-J9-A52C-01 1 33992853 33992853 G A CSMD2 Missense_Mutation p.R3249W 0.18 deleterious(0.02) possibly_damaging(0.462) TCGA-J9-A52C-01 1 36439077 36439077 G A AGO3 Missense_Mutation p.R208Q 0.15 deleterious(0.01) possibly_damaging(0.595) TCGA-J9-A52C-01 1 36824360 36824360 G A STK40 Missense_Mutation p.T59M 0.17 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 1 3750452 3750452 G A CEP104 Missense_Mutation p.R545C 0.08 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 1 3806546 3806546 T C C1orf174 Missense_Mutation p.D237G 0.19 deleterious(0.01) benign(0.124) TCGA-J9-A52C-01 1 38305823 38305823 C T MTF1 Missense_Mutation p.R139Q 0.25 deleterious(0.02) probably_damaging(0.973) TCGA-J9-A52C-01 1 40319624 40319624 C T TRIT1 Intron 0.23 TCGA-J9-A52C-01 1 40433346 40433346 G A MFSD2A Missense_Mutation p.R366Q 0.18 deleterious(0) benign(0.145) TCGA-J9-A52C-01 1 40705391 40705391 A - RLF Frame_Shift_Del p.K1673Nfs*11 0.14 TCGA-J9-A52C-01 1 42045766 42045766 G A HIVEP3 Missense_Mutation p.P1568L 0.18 benign(0.017) TCGA-J9-A52C-01 1 42915659 42915659 C T ZMYND12 Missense_Mutation p.R61H 0.16 tolerated(0.05) probably_damaging(0.997) TCGA-J9-A52C-01 1 44450661 44450661 G A B4GALT2 Missense_Mutation p.R254H 0.17 tolerated(0.26) probably_damaging(0.999) TCGA-J9-A52C-01 1 45796900 45796900 G A MUTYH Missense_Mutation p.T474M 0.15 deleterious(0) probably_damaging(0.992) TCGA-J9-A52C-01 1 46073732 46073732 G A NASP Silent p.P383P 0.12 TCGA-J9-A52C-01 1 46745250 46745250 C T LRRC41 Missense_Mutation p.R686H 0.12 tolerated(0.24) possibly_damaging(0.715) TCGA-J9-A52C-01 1 46751151 46751151 G A LRRC41 Missense_Mutation p.R460C 0.14 deleterious(0) possibly_damaging(0.835) TCGA-J9-A52C-01 1 47505158 47505158 C T CYP4X1 Missense_Mutation p.R343W 0.12 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 1 47904283 47904283 G A FOXD2 Missense_Mutation p.G159D 0.21 tolerated(0.25) benign(0.127) TCGA-J9-A52C-01 1 49224879 49224879 G A BEND5 Silent p.N146N 0.33 TCGA-J9-A52C-01 1 53728214 53728214 C A LRP8 Missense_Mutation p.G560W 0.17 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 1 57422471 57422471 C T C8B Missense_Mutation p.R121Q 0.16 tolerated(0.13) benign(0.022) TCGA-J9-A52C-01 1 60073488 60073488 C T FGGY Missense_Mutation p.P306L 0.19 deleterious(0) benign(0.127) TCGA-J9-A52C-01 1 65143972 65143972 G A CACHD1 Missense_Mutation p.V1024I 0.16 tolerated(0.37) benign(0.001) TCGA-J9-A52C-01 1 65147754 65147754 G A CACHD1 Missense_Mutation p.R1133H 0.10 tolerated(0.15) possibly_damaging(0.799) TCGA-J9-A52C-01 1 65303716 65303716 A G JAK1 Silent p.S1013S 0.14 TCGA-J9-A52C-01 1 6688564 6688564 C T THAP3 Missense_Mutation p.P27L 0.14 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 1 71536662 71536662 G A ZRANB2 Silent p.D177D 0.23 TCGA-J9-A52C-01 1 76397716 76397716 G A ASB17 Silent p.L87L 0.26 TCGA-J9-A52C-01 1 878744 878745 GA - SAMD11 Frame_Shift_Del p.E560Vfs*180 0.14 TCGA-J9-A52C-01 1 90400389 90400389 C T LRRC8D Missense_Mutation p.R588W 0.10 deleterious(0) probably_damaging(0.957) TCGA-J9-A52C-01 1 9662288 9662288 C T TMEM201 Missense_Mutation p.A373V 0.12 deleterious(0) possibly_damaging(0.751) TCGA-J9-A52C-01 1 986959 986959 G A AGRN Missense_Mutation p.V1833I 0.23 tolerated(0.33) benign(0.002) TCGA-J9-A52C-01 20 13098266 13098266 G A SPTLC3 Missense_Mutation p.R349Q 0.08 deleterious(0.03) benign(0.272) TCGA-J9-A52C-01 20 13714387 13714388 - T ESF1 Frame_Shift_Ins p.R644Kfs*11 0.31 TCGA-J9-A52C-01 20 18005361 18005361 T - OVOL2 Frame_Shift_Del p.K249Nfs*10 0.10 TCGA-J9-A52C-01 20 2442476 2442476 G A SNRPB Intron 0.17 TCGA-J9-A52C-01 20 24994194 24994194 G A ACSS1 Silent p.D519D 0.12 TCGA-J9-A52C-01 20 33589834 33589834 G A MYH7B Silent p.A1962A 0.39 TCGA-J9-A52C-01 20 36149621 36149621 G A NNAT 5'UTR 0.11 TCGA-J9-A52C-01 20 36634623 36634623 C T TTI1 Missense_Mutation p.V827I 0.11 tolerated(0.76) benign(0.012) TCGA-J9-A52C-01 20 42275596 42275596 T C IFT52 Silent p.S429S 0.15 TCGA-J9-A52C-01 20 49236609 49236609 G A FAM65C Silent p.Y57Y 0.12 TCGA-J9-A52C-01 20 5550838 5550838 C T GPCPD1 Silent p.V368V 0.07 TCGA-J9-A52C-01 20 55840761 55840761 C T BMP7 Missense_Mutation p.V140M 0.44 deleterious(0) possibly_damaging(0.462) TCGA-J9-A52C-01 20 61288118 61288118 C T SLCO4A1 Silent p.G104G 0.13 TCGA-J9-A52C-01 20 61513671 61513671 C T DIDO1 Missense_Mutation p.E1213K 0.22 probably_damaging(0.994) TCGA-J9-A52C-01 20 61834854 61834854 C T YTHDF1 Silent p.A146A 0.10 TCGA-J9-A52C-01 20 61981807 61981808 - G CHRNA4 Frame_Shift_Ins p.L319Pfs*59 0.11 TCGA-J9-A52C-01 20 62078121 62078121 C T KCNQ2 Silent p.S122S 0.13 TCGA-J9-A52C-01 21 37741614 37741614 A - MORC3 Frame_Shift_Del p.E652Kfs*8 0.17 TCGA-J9-A52C-01 21 38302558 38302558 G A HLCS Missense_Mutation p.A391V 0.15 tolerated(0.18) benign(0.008) TCGA-J9-A52C-01 21 38862610 38862610 G A DYRK1A Silent p.A266A 0.23 TCGA-J9-A52C-01 21 46363698 46363698 G A FAM207A Missense_Mutation p.V77I 0.16 tolerated(0.47) benign(0.031) TCGA-J9-A52C-01 21 47407560 47407560 G A COL6A1 Missense_Mutation p.G266S 0.15 deleterious(0.02) unknown(0) TCGA-J9-A52C-01 22 20073512 20073512 C T DGCR8 Missense_Mutation p.P9L 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-J9-A52C-01 22 20796344 20796344 G A KLHL22 3'UTR 0.19 TCGA-J9-A52C-01 22 21330519 21330519 G A AIFM3 Missense_Mutation p.V275M 0.14 tolerated(0.08) possibly_damaging(0.643) TCGA-J9-A52C-01 22 24376536 24376536 C - GSTT1 Frame_Shift_Del p.E204Rfs*12 0.19 TCGA-J9-A52C-01 22 29695246 29695246 G A EWSR1 Missense_Mutation p.A540T 0.17 deleterious(0.03) unknown(0) TCGA-J9-A52C-01 22 29754917 29754917 C A AP1B1 Missense_Mutation p.R108L 0.14 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 22 30125184 30125184 C A CABP7 Silent p.P169P 0.18 TCGA-J9-A52C-01 22 31723224 31723224 C T PATZ1 Missense_Mutation p.D573N 0.18 tolerated(0.18) benign(0.013) TCGA-J9-A52C-01 22 36907719 36907719 C A EIF3D Missense_Mutation p.W488C 0.13 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 22 37387299 37387299 T - TEX33 Frame_Shift_Del p.N255Mfs*3 0.10 TCGA-J9-A52C-01 22 37455445 37455445 C T KCTD17 Silent p.N200N 0.16 TCGA-J9-A52C-01 22 37962558 37962558 G A CDC42EP1 Missense_Mutation p.G68S 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-J9-A52C-01 22 38028044 38028044 C T GGA1 Missense_Mutation p.R524C 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-J9-A52C-01 22 39382073 39382073 G A APOBEC3B Missense_Mutation p.R144H 0.21 tolerated(0.26) benign(0.005) TCGA-J9-A52C-01 22 39712828 39712830 CTT - RPL3 In_Frame_Del p.K128del 0.12 TCGA-J9-A52C-01 22 40815315 40815315 C T MKL1 Missense_Mutation p.R376H 0.11 deleterious(0) possibly_damaging(0.595) TCGA-J9-A52C-01 22 46631153 46631153 A - PPARA Frame_Shift_Del p.M430Wfs*8 0.12 TCGA-J9-A52C-01 22 50438904 50438904 T C IL17REL Intron 0.18 TCGA-J9-A52C-01 22 50892978 50892978 G A SBF1 Missense_Mutation p.P1669L 0.16 tolerated(0.13) benign(0.114) TCGA-J9-A52C-01 2 100170918 100170918 G A AFF3 Silent p.N1163N 0.12 TCGA-J9-A52C-01 2 103040431 103040431 C T IL18RAP Silent p.N77N 0.19 TCGA-J9-A52C-01 2 103335662 103335662 G A MFSD9 Silent p.L214L 0.14 TCGA-J9-A52C-01 2 112604725 112604725 G A ANAPC1 Silent p.T614T 0.32 TCGA-J9-A52C-01 2 127956952 127956952 C T CYP27C1 Silent p.T184T 0.09 TCGA-J9-A52C-01 2 129026305 129026305 G A HS6ST1 Missense_Mutation p.P223S 0.16 tolerated(1) benign(0.01) TCGA-J9-A52C-01 2 130911013 130911013 G A SMPD4 Missense_Mutation p.A674V 0.20 tolerated(0.14) benign(0.091) TCGA-J9-A52C-01 2 133540274 133540274 C T NCKAP5 Silent p.L1370L 0.18 TCGA-J9-A52C-01 2 136574943 136574943 C T LCT Missense_Mutation p.G559S 0.12 deleterious(0.03) possibly_damaging(0.647) TCGA-J9-A52C-01 2 160080827 160080827 C T TANC1 Missense_Mutation p.R1255W 0.07 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 2 162875737 162875737 A G DPP4 Missense_Mutation p.Y432H 0.20 deleterious(0) probably_damaging(0.998) TCGA-J9-A52C-01 2 170048428 170048428 G A LRP2 Silent p.Y2982Y 0.06 TCGA-J9-A52C-01 2 176981919 176981919 C T HOXD10 Missense_Mutation p.R120C 0.20 tolerated(0.25) probably_damaging(0.997) TCGA-J9-A52C-01 2 177036519 177036519 G A HOXD3 Silent p.P272P 0.12 TCGA-J9-A52C-01 2 179213981 179213981 C T OSBPL6 Missense_Mutation p.R365C 0.17 deleterious(0) probably_damaging(0.979) TCGA-J9-A52C-01 2 179588313 179588313 T G TTN Silent p.R7172R 0.13 TCGA-J9-A52C-01 2 179610612 179610612 A - TTN Intron 0.11 TCGA-J9-A52C-01 2 201800586 201800586 C T ORC2 Missense_Mutation p.E182K 0.12 deleterious(0.01) possibly_damaging(0.604) TCGA-J9-A52C-01 2 217297570 217297570 C T SMARCAL1 Silent p.S488S 0.20 TCGA-J9-A52C-01 2 219232426 219232426 G A C2orf62 Intron 0.25 TCGA-J9-A52C-01 2 222347370 222347370 G A EPHA4 Silent p.N340N 0.10 TCGA-J9-A52C-01 2 230725184 230725184 A G TRIP12 Intron 0.11 TCGA-J9-A52C-01 2 232196543 232196543 C T ARMC9 Silent p.D604D 0.13 TCGA-J9-A52C-01 2 232262921 232262921 C T B3GNT7 Missense_Mutation p.A164V 0.19 tolerated(0.29) benign(0.005) TCGA-J9-A52C-01 2 233710483 233710483 A T GIGYF2 Missense_Mutation p.E1137V 0.08 unknown(0) TCGA-J9-A52C-01 2 234668931 234668931 G A UGT1A1 5'UTR 0.09 TCGA-J9-A52C-01 2 234775651 234775651 C T MSL3P1 RNA 0.16 TCGA-J9-A52C-01 2 234846109 234846109 G A TRPM8 Missense_Mutation p.A102T 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-J9-A52C-01 2 235951365 235951365 G A SH3BP4 Missense_Mutation p.R651H 0.13 tolerated(0.08) benign(0.298) TCGA-J9-A52C-01 2 237489181 237489181 G A ACKR3 Missense_Mutation p.D25N 0.20 tolerated(0.44) benign(0.006) TCGA-J9-A52C-01 2 238494711 238494711 G A RAB17 Silent p.S29S 0.22 TCGA-J9-A52C-01 2 241622317 241622317 C T AQP12B 5'UTR 0.11 TCGA-J9-A52C-01 2 242707232 242707232 G A D2HGDH Missense_Mutation p.V472I 0.14 tolerated(1) benign(0.02) TCGA-J9-A52C-01 2 26505777 26505777 C T HADHB Missense_Mutation p.P333L 0.19 deleterious(0) probably_damaging(0.979) TCGA-J9-A52C-01 2 29297043 29297043 G A C2orf71 Missense_Mutation p.R29W 0.23 deleterious(0) possibly_damaging(0.784) TCGA-J9-A52C-01 2 32667453 32667453 C T BIRC6 Missense_Mutation p.R1390C 0.27 probably_damaging(0.993) TCGA-J9-A52C-01 2 54886368 54886368 G A SPTBN1 Silent p.T2107T 0.14 TCGA-J9-A52C-01 2 69049673 69049673 A G ARHGAP25 Missense_Mutation p.N468D 0.18 tolerated(0.23) benign(0.287) TCGA-J9-A52C-01 2 69177376 69177376 G A GKN2 Missense_Mutation p.P29L 0.23 deleterious(0.02) benign(0.215) TCGA-J9-A52C-01 2 74328942 74328942 C T TET3 Missense_Mutation p.T1541M 0.18 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 2 74655813 74655813 G A RTKN Missense_Mutation p.A301V 0.10 tolerated(1) benign(0.002) TCGA-J9-A52C-01 2 74906752 74906752 G A SEMA4F Missense_Mutation p.V577M 0.14 tolerated(0.08) benign(0.149) TCGA-J9-A52C-01 2 96963422 96963422 G A SNRNP200 Nonsense_Mutation p.R386* 0.10 TCGA-J9-A52C-01 3 10255194 10255194 C T IRAK2 Silent p.I250I 0.12 TCGA-J9-A52C-01 3 119536021 119536021 C - NR1I2 Frame_Shift_Del p.L463Sfs*59 0.17 TCGA-J9-A52C-01 3 12187198 12187198 G A SYN2 RNA 0.19 TCGA-J9-A52C-01 3 122160929 122160929 G A KPNA1 Nonsense_Mutation p.R318* 0.11 TCGA-J9-A52C-01 3 122340432 122340432 C T PARP15 Missense_Mutation p.S402L 0.12 deleterious(0) possibly_damaging(0.859) TCGA-J9-A52C-01 3 122646834 122646834 C T SEMA5B Missense_Mutation p.R272Q 0.12 tolerated(0.51) benign(0.008) TCGA-J9-A52C-01 3 123426765 123426765 G A MYLK Silent p.C742C 0.24 TCGA-J9-A52C-01 3 124132334 124132334 C T KALRN Silent p.D786D 0.12 TCGA-J9-A52C-01 3 132403474 132403474 C T NPHP3 Missense_Mutation p.R1165Q 0.09 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 3 140866040 140866040 C T SPSB4 Missense_Mutation p.R251C 0.19 tolerated(0.06) possibly_damaging(0.773) TCGA-J9-A52C-01 3 141011689 141011689 G A ACPL2 Missense_Mutation p.R362H 0.17 tolerated(0.18) benign(0.009) TCGA-J9-A52C-01 3 154147110 154147110 C T GPR149 Missense_Mutation p.G99S 0.22 tolerated(0.23) benign(0.085) TCGA-J9-A52C-01 3 165548603 165548604 - T BCHE Frame_Shift_Ins p.P74Afs*9 0.10 TCGA-J9-A52C-01 3 171320774 171320774 G A PLD1 3'UTR 0.55 TCGA-J9-A52C-01 3 180324131 180324131 C T TTC14 Silent p.N340N 0.08 TCGA-J9-A52C-01 3 182662847 182662847 A G DCUN1D1 3'UTR 0.13 TCGA-J9-A52C-01 3 185184670 185184670 G A MAP3K13 Missense_Mutation p.R521H 0.12 deleterious(0) benign(0.206) TCGA-J9-A52C-01 3 190322109 190322109 G A IL1RAP Missense_Mutation p.R86H 0.23 deleterious(0.03) benign(0.403) TCGA-J9-A52C-01 3 21792397 21792398 TA - ZNF385D Frame_Shift_Del p.I4Nfs*30 0.11 TCGA-J9-A52C-01 3 27759145 27759145 C T EOMES Missense_Mutation p.E493K 0.09 deleterious(0.01) probably_damaging(0.994) TCGA-J9-A52C-01 3 33114046 33114046 C T GLB1 Missense_Mutation p.A79T 0.13 tolerated(0.17) benign(0.12) TCGA-J9-A52C-01 3 38039124 38039124 A G VILL Missense_Mutation p.T238A 0.12 tolerated(0.4) benign(0.001) TCGA-J9-A52C-01 3 39229797 39229797 G A XIRP1 Silent p.S380S 0.14 TCGA-J9-A52C-01 3 44636041 44636041 C T ZNF660 Missense_Mutation p.S119L 0.19 deleterious(0.01) benign(0.374) TCGA-J9-A52C-01 3 46721968 46721968 G A ALS2CL Silent p.T500T 0.14 TCGA-J9-A52C-01 3 48200920 48200920 G A CDC25A Missense_Mutation p.R450C 0.15 deleterious(0.01) probably_damaging(1) TCGA-J9-A52C-01 3 49049664 49049664 G A WDR6 Missense_Mutation p.V263I 0.18 tolerated(0.27) benign(0.369) TCGA-J9-A52C-01 3 49161296 49161296 G A LAMB2 Missense_Mutation p.T1221M 0.14 deleterious(0.04) benign(0.094) TCGA-J9-A52C-01 3 49168460 49168460 G A LAMB2 Missense_Mutation p.R280C 0.21 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 3 50224121 50224121 C T SEMA3F Missense_Mutation p.S630L 0.14 deleterious(0) possibly_damaging(0.848) TCGA-J9-A52C-01 3 51897158 51897158 G A IQCF2 Silent p.R89R 0.16 TCGA-J9-A52C-01 3 56658551 56658551 T C FAM208A Missense_Mutation p.N1480S 0.12 tolerated(0.41) benign(0.012) TCGA-J9-A52C-01 3 57545300 57545300 C T PDE12 Missense_Mutation p.R467C 0.30 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 3 73432601 73432601 G A PDZRN3 Missense_Mutation p.T1039M 0.16 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 3 73433350 73433350 C T PDZRN3 Silent p.P789P 0.17 TCGA-J9-A52C-01 3 93624977 93624977 G A PROS1 Silent p.D119D 0.14 TCGA-J9-A52C-01 4 1164338 1164338 C T SPON2 Silent p.P221P 0.13 TCGA-J9-A52C-01 4 126411235 126411235 T C FAT4 Missense_Mutation p.Y4420H 0.14 benign(0.006) TCGA-J9-A52C-01 4 13603650 13603650 T A BOD1L1 Missense_Mutation p.D1625V 0.12 possibly_damaging(0.475) TCGA-J9-A52C-01 4 148886179 148886179 C T ARHGAP10 Silent p.S485S 0.22 TCGA-J9-A52C-01 4 156825203 156825203 C T TDO2 Silent p.S23S 0.11 TCGA-J9-A52C-01 4 1656711 1656711 C T FAM53A Missense_Mutation p.M292I 0.10 deleterious(0) probably_damaging(0.916) TCGA-J9-A52C-01 4 170987609 170987609 T C AADAT Missense_Mutation p.N328S 0.24 tolerated(0.69) benign(0) TCGA-J9-A52C-01 4 174253206 174253206 A G HMGB2 3'UTR 0.21 TCGA-J9-A52C-01 4 1805423 1805423 C T FGFR3 Intron 0.17 TCGA-J9-A52C-01 4 185593424 185593424 T - PRIMPOL Frame_Shift_Del p.S220Qfs*47 0.09 TCGA-J9-A52C-01 4 22389827 22389827 G A GPR125 Missense_Mutation p.A1156V 0.09 tolerated(0.13) possibly_damaging(0.575) TCGA-J9-A52C-01 4 22390048 22390048 C T GPR125 Silent p.T1082T 0.14 TCGA-J9-A52C-01 4 2273484 2273484 C T ZFYVE28 Silent p.A782A 0.16 TCGA-J9-A52C-01 4 26483360 26483360 G A CCKAR Missense_Mutation p.A396V 0.17 tolerated(0.45) benign(0) TCGA-J9-A52C-01 4 2698177 2698177 A - FAM193A Frame_Shift_Del p.M833Wfs*23 0.17 TCGA-J9-A52C-01 4 3235012 3235012 C T HTT Silent p.D2796D 0.12 TCGA-J9-A52C-01 4 3318863 3318863 C T RGS12 Silent p.D322D 0.14 TCGA-J9-A52C-01 4 39230192 39230193 AC - WDR19 Frame_Shift_Del p.Q623Efs*10 0.13 TCGA-J9-A52C-01 4 56840987 56840987 G A CEP135 Missense_Mutation p.R442H 0.09 tolerated(0.06) probably_damaging(0.987) TCGA-J9-A52C-01 4 5755633 5755633 G A EVC Silent p.P479P 0.15 TCGA-J9-A52C-01 4 6292992 6292992 C T WFS1 Missense_Mutation p.R177C 0.17 deleterious(0) probably_damaging(0.994) TCGA-J9-A52C-01 4 68691458 68691458 C T TMPRSS11D Missense_Mutation p.A363T 0.15 deleterious(0) probably_damaging(0.977) TCGA-J9-A52C-01 4 6925365 6925365 G A TBC1D14 Silent p.A83A 0.18 TCGA-J9-A52C-01 4 871404 871404 G A GAK Missense_Mutation p.R619W 0.11 deleterious(0) probably_damaging(0.984) TCGA-J9-A52C-01 5 101576467 101576467 G A SLCO4C1 Missense_Mutation p.R611W 0.22 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 5 114466495 114466495 T A TRIM36 Silent p.G542G 0.16 TCGA-J9-A52C-01 5 118487710 118487710 C T DMXL1 Nonsense_Mutation p.R1561* 0.09 TCGA-J9-A52C-01 5 133896555 133896555 G A JADE2 Missense_Mutation p.E198K 0.16 deleterious(0) probably_damaging(0.994) TCGA-J9-A52C-01 5 136969760 136969760 G A KLHL3 Silent p.Y472Y 0.13 TCGA-J9-A52C-01 5 137727927 137727927 G A KDM3B Missense_Mutation p.R869Q 0.12 tolerated(0.09) probably_damaging(0.996) TCGA-J9-A52C-01 5 13839629 13839629 C T DNAH5 Missense_Mutation p.M1906I 0.17 benign(0.019) TCGA-J9-A52C-01 5 140203082 140203082 C T PCDHA5 Silent p.G574G 0.08 TCGA-J9-A52C-01 5 140222184 140222184 C T PCDHA8 Silent p.T426T 0.13 TCGA-J9-A52C-01 5 140348548 140348548 C T PCDHAC2 Missense_Mutation p.R733C 0.22 deleterious(0) benign(0.164) TCGA-J9-A52C-01 5 140552513 140552513 T C PCDHB7 Missense_Mutation p.Y33H 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-J9-A52C-01 5 140741805 140741805 G A PCDHGB2 Silent p.V701V 0.23 TCGA-J9-A52C-01 5 140744399 140744399 C T PCDHGA5 Missense_Mutation p.R168W 0.09 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-J9-A52C-01 5 140764615 140764615 C T PCDHGA7 Missense_Mutation p.R717W 0.13 tolerated_low_confidence(0.11) benign(0.057) TCGA-J9-A52C-01 5 140789375 140789375 G A PCDHGB6 Missense_Mutation p.D536N 0.12 deleterious(0.01) possibly_damaging(0.84) TCGA-J9-A52C-01 5 14504649 14504649 C T TRIO Silent p.V2853V 0.17 TCGA-J9-A52C-01 5 148586656 148586656 C T ABLIM3 Silent p.C178C 0.19 TCGA-J9-A52C-01 5 149460505 149460505 G A CSF1R Silent p.G44G 0.14 TCGA-J9-A52C-01 5 149514471 149514471 A G PDGFRB Missense_Mutation p.V158A 0.16 deleterious(0.03) probably_damaging(1) TCGA-J9-A52C-01 5 149915319 149915319 T C NDST1 Missense_Mutation p.Y437H 0.22 tolerated(0.05) benign(0.232) TCGA-J9-A52C-01 5 156746769 156746769 G T CYFIP2 Splice_Site p.X427_splice 0.17 TCGA-J9-A52C-01 5 167868736 167868736 C T WWC1 Missense_Mutation p.S777L 0.12 tolerated(0.66) benign(0.035) TCGA-J9-A52C-01 5 179025750 179025750 C T RUFY1 Silent p.R563R 0.13 TCGA-J9-A52C-01 5 179264647 179264647 G A C5orf45 Missense_Mutation p.P259L 0.12 tolerated(0.09) benign(0.063) TCGA-J9-A52C-01 5 38403957 38403957 C T EGFLAM Intron 0.10 TCGA-J9-A52C-01 5 428070 428070 C T AHRR Missense_Mutation p.A308V 0.13 tolerated(1) benign(0.014) TCGA-J9-A52C-01 5 59064275 59064275 G A PDE4D Intron 0.10 TCGA-J9-A52C-01 5 64748629 64748629 G A ADAMTS6 Missense_Mutation p.R250W 0.20 deleterious(0) probably_damaging(0.995) TCGA-J9-A52C-01 5 67588988 67588988 C T PIK3R1 Missense_Mutation p.A360V 0.10 deleterious(0) probably_damaging(0.981) TCGA-J9-A52C-01 5 76028839 76028839 C T F2R Silent p.L263L 0.06 TCGA-J9-A52C-01 6 100390836 100390836 G A MCHR2 Silent p.D192D 0.09 TCGA-J9-A52C-01 6 102483425 102483425 C T GRIK2 Silent p.G765G 0.18 TCGA-J9-A52C-01 6 111214835 111214835 A - AMD1 3'UTR 0.16 TCGA-J9-A52C-01 6 117047719 117047719 G A KPNA5 Missense_Mutation p.R396H 0.11 deleterious(0.01) possibly_damaging(0.737) TCGA-J9-A52C-01 6 13365808 13365808 G A GFOD1 Missense_Mutation p.L114F 0.13 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 6 136589310 136589310 C T BCLAF1 Missense_Mutation p.R796Q 0.06 deleterious(0.03) benign(0.417) TCGA-J9-A52C-01 6 137191048 137191048 G A PEX7 Silent p.A218A 0.14 TCGA-J9-A52C-01 6 139487597 139487597 C T HECA Missense_Mutation p.R150C 0.25 deleterious(0) probably_damaging(0.989) TCGA-J9-A52C-01 6 143828534 143828534 C T FUCA2 Silent p.P84P 0.16 TCGA-J9-A52C-01 6 148865589 148865589 C T SASH1 Missense_Mutation p.R995C 0.15 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-J9-A52C-01 6 151670568 151670568 G A AKAP12 Missense_Mutation p.E348K 0.09 deleterious(0.02) probably_damaging(0.928) TCGA-J9-A52C-01 6 152674405 152674405 G A SYNE1 Missense_Mutation p.T3749M 0.16 benign(0.003) TCGA-J9-A52C-01 6 152718084 152718084 C T SYNE1 Missense_Mutation p.S2461N 0.08 benign(0.002) TCGA-J9-A52C-01 6 158483059 158483059 G A SYNJ2 Silent p.T330T 0.13 TCGA-J9-A52C-01 6 160468851 160468851 C T IGF2R Missense_Mutation p.R753W 0.20 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 6 160494345 160494345 T C IGF2R Silent p.P1597P 0.23 TCGA-J9-A52C-01 6 16254791 16254791 A G GMPR Splice_Site p.X98_splice 0.10 TCGA-J9-A52C-01 6 16279025 16279025 C T GMPR Silent p.C186C 0.09 TCGA-J9-A52C-01 6 169629715 169629715 G A THBS2 Silent p.G737G 0.18 TCGA-J9-A52C-01 6 170159960 170159960 C T ERMARD Missense_Mutation p.T211M 0.14 deleterious(0.02) possibly_damaging(0.56) TCGA-J9-A52C-01 6 17800327 17800327 G A KIF13A Silent p.H824H 0.19 TCGA-J9-A52C-01 6 24357937 24357937 G A KAAG1 Missense_Mutation p.G24R 0.13 tolerated_low_confidence(0.85) benign(0.001) TCGA-J9-A52C-01 6 26031878 26031878 T C HIST1H3B Silent p.%3D 0.20 TCGA-J9-A52C-01 6 27115008 27115008 T C HIST1H2AH Missense_Mutation p.L34P 0.16 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-J9-A52C-01 6 27778286 27778286 T C HIST1H3H 3'UTR 0.25 TCGA-J9-A52C-01 6 30550275 30550276 - A ABCF1 Frame_Shift_Ins p.Q264Tfs*5 0.19 TCGA-J9-A52C-01 6 30627570 30627570 C T DHX16 Silent p.V599V 0.20 TCGA-J9-A52C-01 6 32814903 32814903 G A TAP1 Missense_Mutation p.P721L 0.17 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 6 33171401 33171401 C T SLC39A7 Silent p.G407G 0.06 TCGA-J9-A52C-01 6 33236870 33236870 G A VPS52 Nonsense_Mutation p.R157* 0.18 TCGA-J9-A52C-01 6 33236966 33236966 G A VPS52 Nonsense_Mutation p.R125* 0.23 TCGA-J9-A52C-01 6 33383810 33383810 C T PHF1 Missense_Mutation p.R547W 0.14 deleterious(0) probably_damaging(0.965) TCGA-J9-A52C-01 6 35471598 35471598 C T TULP1 Silent p.T380T 0.23 TCGA-J9-A52C-01 6 36181863 36181863 C T BRPF3 Missense_Mutation p.R897C 0.14 tolerated(0.07) benign(0) TCGA-J9-A52C-01 6 36298375 36298375 C T C6orf222 Silent p.S31S 0.05 TCGA-J9-A52C-01 6 4032804 4032806 AAG - PRPF4B In_Frame_Del p.R353del 0.16 TCGA-J9-A52C-01 6 41774068 41774068 G A USP49 Silent p.D218D 0.13 TCGA-J9-A52C-01 6 43221327 43221327 C T TTBK1 Missense_Mutation p.R118C 0.24 probably_damaging(0.998) TCGA-J9-A52C-01 6 43748503 43748503 C T VEGFA Nonsense_Mutation p.R333* 0.13 TCGA-J9-A52C-01 6 44320499 44320500 - T SPATS1 Frame_Shift_Ins p.A61Cfs*24 0.13 TCGA-J9-A52C-01 6 47682266 47682266 C T GPR115 Missense_Mutation p.R429W 0.19 deleterious(0.01) probably_damaging(0.976) TCGA-J9-A52C-01 6 55684477 55684477 T C BMP5 Missense_Mutation p.Q220R 0.26 deleterious(0) probably_damaging(0.983) TCGA-J9-A52C-01 6 56485250 56485250 C T DST Intron 0.19 TCGA-J9-A52C-01 7 100202790 100202790 C - PCOLCE Frame_Shift_Del p.P182Rfs*19 0.13 TCGA-J9-A52C-01 7 100880655 100880655 C T CLDN15 Missense_Mutation p.A70T 0.16 deleterious(0) probably_damaging(0.94) TCGA-J9-A52C-01 7 101758534 101758534 G A CUX1 Missense_Mutation p.D230N 0.08 tolerated(0.17) unknown(0) TCGA-J9-A52C-01 7 101840561 101840561 C T CUX1 Missense_Mutation p.R635C 0.16 deleterious(0) unknown(0) TCGA-J9-A52C-01 7 113558764 113558764 C T PPP1R3A Silent p.T96T 0.16 TCGA-J9-A52C-01 7 11630114 11630114 G A THSD7A Nonsense_Mutation p.Q476* 0.15 TCGA-J9-A52C-01 7 122261737 122261737 A G CADPS2 Missense_Mutation p.M301T 0.19 deleterious(0) probably_damaging(0.998) TCGA-J9-A52C-01 7 122342454 122342454 G A RNF148 Silent p.N117N 0.18 TCGA-J9-A52C-01 7 128034367 128034367 C T IMPDH1 Silent p.S581S 0.22 TCGA-J9-A52C-01 7 128488072 128488072 C T FLNC Silent p.D1510D 0.40 TCGA-J9-A52C-01 7 129094302 129094302 C T STRIP2 Missense_Mutation p.R214C 0.11 deleterious(0) probably_damaging(0.982) TCGA-J9-A52C-01 7 130021608 130021608 G A CPA1 Silent p.S95S 0.14 TCGA-J9-A52C-01 7 148875783 148875783 G A ZNF398 Silent p.S273S 0.13 TCGA-J9-A52C-01 7 150034682 150034682 G A LRRC61 Silent p.A244A 0.11 TCGA-J9-A52C-01 7 150417944 150417944 C T GIMAP1 Silent p.G284G 0.18 TCGA-J9-A52C-01 7 1527550 1527550 G A INTS1 Missense_Mutation p.R788W 0.18 deleterious(0.04) possibly_damaging(0.821) TCGA-J9-A52C-01 7 20418789 20418789 C T ITGB8 Silent p.S168S 0.23 TCGA-J9-A52C-01 7 20668422 20668422 G A ABCB5 Missense_Mutation p.D74N 0.18 tolerated(0.19) possibly_damaging(0.574) TCGA-J9-A52C-01 7 23207467 23207468 TG - KLHL7 Frame_Shift_Del p.Y398Ffs*3 0.15 TCGA-J9-A52C-01 7 30538451 30538451 C T GGCT Missense_Mutation p.E131K 0.17 tolerated(0.89) benign(0.002) TCGA-J9-A52C-01 7 36927225 36927225 G A ELMO1 Missense_Mutation p.R552C 0.12 deleterious(0) probably_damaging(0.945) TCGA-J9-A52C-01 7 47933631 47933631 T C PKD1L1 Missense_Mutation p.Y766C 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-J9-A52C-01 7 47955075 47955075 T C PKD1L1 Silent p.S394S 0.18 TCGA-J9-A52C-01 7 48506591 48506591 T G ABCA13 Missense_Mutation p.L4285R 0.17 probably_damaging(1) TCGA-J9-A52C-01 7 51095820 51095820 C A COBL Missense_Mutation p.Q991H 0.17 tolerated(0.06) possibly_damaging(0.847) TCGA-J9-A52C-01 7 65553837 65553837 C T ASL Silent p.S254S 0.26 TCGA-J9-A52C-01 7 72744195 72744195 G A FKBP6 Missense_Mutation p.R103Q 0.21 deleterious(0.05) benign(0.021) TCGA-J9-A52C-01 7 75053837 75053837 C T POM121C Nonsense_Mutation p.W281* 0.10 TCGA-J9-A52C-01 7 76140012 76140014 CTC - UPK3B In_Frame_Del p.L17del 0.31 TCGA-J9-A52C-01 7 90894692 90894692 A G FZD1 Missense_Mutation p.K166R 0.13 tolerated(0.77) benign(0.007) TCGA-J9-A52C-01 7 92146659 92146659 T C PEX1 Silent p.G390G 0.20 TCGA-J9-A52C-01 7 98445737 98445737 C T TMEM130 Missense_Mutation p.R417H 0.18 deleterious(0) probably_damaging(0.993) TCGA-J9-A52C-01 7 98608824 98608824 G A TRRAP Silent p.A3682A 0.14 TCGA-J9-A52C-01 8 101586126 101586126 G A SNX31 Silent p.C430C 0.10 TCGA-J9-A52C-01 8 101661556 101661556 G A SNX31 Silent p.D29D 0.11 TCGA-J9-A52C-01 8 10467947 10467947 C T RP1L1 Missense_Mutation p.G1221S 0.12 benign(0.007) TCGA-J9-A52C-01 8 110587185 110587185 C T SYBU Missense_Mutation p.V648M 0.20 tolerated(0.08) benign(0.039) TCGA-J9-A52C-01 8 11189592 11189592 G A SLC35G5 Missense_Mutation p.R326Q 0.07 tolerated(0.48) benign(0.001) TCGA-J9-A52C-01 8 119936817 119936817 T C TNFRSF11B Missense_Mutation p.I334M 0.14 tolerated(0.29) benign(0.069) TCGA-J9-A52C-01 8 124988246 124988246 G A FER1L6 Silent p.A264A 0.17 TCGA-J9-A52C-01 8 131073267 131073267 G A ASAP1 Missense_Mutation p.P917L 0.10 tolerated(0.11) benign(0.109) TCGA-J9-A52C-01 8 133909950 133909950 G A TG Missense_Mutation p.A1020T 0.21 tolerated(0.82) benign(0.028) TCGA-J9-A52C-01 8 141727771 141727771 G A PTK2 Missense_Mutation p.R690C 0.19 tolerated(0.09) probably_damaging(0.993) TCGA-J9-A52C-01 8 144944144 144944144 G A EPPK1 Missense_Mutation p.T1093M 0.21 possibly_damaging(0.877) TCGA-J9-A52C-01 8 145006673 145006673 G A PLEC Silent p.A761A 0.17 TCGA-J9-A52C-01 8 145051834 145051834 G A PARP10 Missense_Mutation p.R966W 0.19 deleterious(0) probably_damaging(0.999) TCGA-J9-A52C-01 8 145095639 145095639 G A SPATC1 Missense_Mutation p.A313T 0.13 tolerated(0.15) benign(0) TCGA-J9-A52C-01 8 145535421 145535421 C T HSF1 Silent p.Y253Y 0.11 TCGA-J9-A52C-01 8 22006441 22006441 G A LGI3 Silent p.Y293Y 0.09 TCGA-J9-A52C-01 8 22862016 22862016 C T RHOBTB2 Silent p.N45N 0.20 TCGA-J9-A52C-01 8 27145327 27145327 C - TRIM35 Frame_Shift_Del p.D408Tfs*4 0.24 TCGA-J9-A52C-01 8 27310662 27310662 G A PTK2B Silent p.P860P 0.13 TCGA-J9-A52C-01 8 38835668 38835668 T C HTRA4 Splice_Site p.X322_splice 0.26 TCGA-J9-A52C-01 8 41525928 41525928 C T ANK1 Missense_Mutation p.E1792K 0.15 tolerated_low_confidence(0.05) benign(0.008) TCGA-J9-A52C-01 8 66753717 66753717 T C PDE7A Silent p.V9V 0.14 TCGA-J9-A52C-01 8 95502188 95502188 A G KIAA1429 Silent p.L1755L 0.26 TCGA-J9-A52C-01 9 101258793 101258793 G A GABBR2 Missense_Mutation p.R212W 0.15 deleterious(0) probably_damaging(0.979) TCGA-J9-A52C-01 9 112898442 112898442 A - PALM2-AKAP2 Frame_Shift_Del p.S208Afs*80 0.12 TCGA-J9-A52C-01 9 116812459 116812459 G - ZNF618 3'UTR 0.14 TCGA-J9-A52C-01 9 116984538 116984538 C T COL27A1 Silent p.P819P 0.25 TCGA-J9-A52C-01 9 124975893 124975893 T C LHX6 Missense_Mutation p.Y349C 0.17 deleterious(0) probably_damaging(1) TCGA-J9-A52C-01 9 126794853 126794853 C T LHX2 Missense_Mutation p.T363M 0.15 deleterious(0.01) possibly_damaging(0.828) TCGA-J9-A52C-01 9 127549357 127549357 G A OLFML2A Missense_Mutation p.R65H 0.12 tolerated(0.18) probably_damaging(0.948) TCGA-J9-A52C-01 9 129974998 129974998 C T RALGPS1 Silent p.H482H 0.11 TCGA-J9-A52C-01 9 130169542 130169542 G A SLC2A8 3'UTR 0.10 TCGA-J9-A52C-01 9 130489367 130489367 C T TTC16 Missense_Mutation p.A515V 0.16 tolerated(0.23) benign(0.025) TCGA-J9-A52C-01 9 130495628 130495628 C - TOR2A Intron 0.15 TCGA-J9-A52C-01 9 131115025 131115025 C T SLC27A4 Missense_Mutation p.T329M 0.09 deleterious(0) probably_damaging(0.955) TCGA-J9-A52C-01 9 131381261 131381261 C T SPTAN1 Silent p.G1904G 0.24 TCGA-J9-A52C-01 9 134371300 134371300 C T PRRC2B 3'UTR 0.24 TCGA-J9-A52C-01 9 134518638 134518638 C T RAPGEF1 Missense_Mutation p.R162Q 0.14 tolerated(0.21) benign(0.015) TCGA-J9-A52C-01 9 136509362 136509362 C T DBH Missense_Mutation p.A315V 0.10 deleterious(0.05) benign(0.424) TCGA-J9-A52C-01 9 136568130 136568130 C T SARDH Missense_Mutation p.G526R 0.17 deleterious(0) benign(0.433) TCGA-J9-A52C-01 9 137321060 137321060 C T RXRA Silent p.S339S 0.21 TCGA-J9-A52C-01 9 138707776 138707776 C T CAMSAP1 Silent p.A1449A 0.08 TCGA-J9-A52C-01 9 138714575 138714575 G A CAMSAP1 Silent p.R644R 0.20 TCGA-J9-A52C-01 9 139289316 139289316 G A SNAPC4 Silent p.N162N 0.10 TCGA-J9-A52C-01 9 139369757 139369757 G A SEC16A Missense_Mutation p.R771W 0.09 tolerated(0.14) benign(0.007) TCGA-J9-A52C-01 9 15175097 15175097 C T TTC39B Silent p.P626P 0.18 TCGA-J9-A52C-01 9 18657652 18657652 T C ADAMTSL1 Missense_Mutation p.S284P 0.26 tolerated(0.4) benign(0) TCGA-J9-A52C-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.39 TCGA-J9-A52C-01 9 22006196 22006196 G A CDKN2B Silent p.G69G 0.17 TCGA-J9-A52C-01 9 33135375 33135375 C T B4GALT1 Missense_Mutation p.V154M 0.13 deleterious(0) possibly_damaging(0.87) TCGA-J9-A52C-01 9 3856144 3856144 G A GLIS3 Missense_Mutation p.R780W 0.17 deleterious(0.02) possibly_damaging(0.702) TCGA-J9-A52C-01 9 5743014 5743014 G A KIAA1432 Splice_Site p.X349_splice 0.19 TCGA-J9-A52C-01 9 67951950 67951950 G A ANKRD20A1 Missense_Mutation p.V305M 0.10 tolerated(0.15) possibly_damaging(0.861) TCGA-J9-A52C-01 9 71628907 71628907 G A PRKACG Silent p.P34P 0.20 TCGA-J9-A52C-01 9 79634892 79634892 C T FOXB2 Missense_Mutation p.R108C 0.19 deleterious(0) unknown(0) TCGA-J9-A52C-01 9 79898329 79898329 G A VPS13A Silent p.S1059S 0.25 TCGA-J9-A52C-01 9 90502868 90502868 G A SPATA31E1 Missense_Mutation p.V1156M 0.23 deleterious(0.02) benign(0.061) TCGA-J9-A52C-01 9 95869990 95869990 G A C9orf89 Silent p.T14T 0.15 TCGA-J9-A52C-01 X 101910582 101910582 G A GPRASP1 Missense_Mutation p.G581R 0.34 tolerated(0.12) possibly_damaging(0.558) TCGA-J9-A52C-01 X 103349894 103349894 G A SLC25A53 Missense_Mutation p.T16M 0.26 tolerated(0.06) benign(0.072) TCGA-J9-A52C-01 X 130408141 130408141 C T IGSF1 Missense_Mutation p.R1269Q 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-J9-A52C-01 X 135790919 135790919 C T ARHGEF6 Missense_Mutation p.V280M 0.30 tolerated(0.1) benign(0.216) TCGA-J9-A52C-01 X 151869697 151869697 G A MAGEA6 Silent p.P129P 0.13 TCGA-J9-A52C-01 X 152807165 152807165 G A ATP2B3 Missense_Mutation p.E149K 0.34 deleterious(0) benign(0.356) TCGA-J9-A52C-01 X 152821637 152821637 G A ATP2B3 Missense_Mutation p.C730Y 0.35 deleterious(0) probably_damaging(0.981) TCGA-J9-A52C-01 X 153033811 153033811 C T PLXNB3 Silent p.S421S 0.21 TCGA-J9-A52C-01 X 153716036 153716036 C T SLC10A3 Missense_Mutation p.R415Q 0.14 deleterious(0.01) benign(0.046) TCGA-J9-A52C-01 X 1561136 1561136 C T ASMTL Silent p.G56G 0.14 TCGA-J9-A52C-01 X 1743283 1743283 C T ASMT Silent p.D122D 0.15 TCGA-J9-A52C-01 X 30237395 30237395 A G MAGEB2 Missense_Mutation p.Y233C 0.25 deleterious(0.01) possibly_damaging(0.762) TCGA-J9-A52C-01 X 3592735 3592735 A G PRKX Missense_Mutation p.M80T 0.32 deleterious(0) probably_damaging(0.959) TCGA-J9-A52C-01 X 47428238 47428238 C T ARAF Missense_Mutation p.R400C 0.45 deleterious(0) possibly_damaging(0.802) TCGA-J9-A52C-01 X 5821330 5821330 G A NLGN4X Silent p.Y463Y 0.25 TCGA-J9-A52C-01 X 69370144 69370144 G A IGBP1 Silent p.P281P 0.70 TCGA-J9-A52D-01 10 28970265 28970265 T A BAMBI Missense_Mutation p.F52Y 0.45 tolerated(0.31) possibly_damaging(0.793) TCGA-J9-A52D-01 10 50953976 50953976 C T OGDHL Silent p.P448P 0.31 TCGA-J9-A52D-01 11 111845678 111845678 A T DIXDC1 Missense_Mutation p.Q209H 0.21 tolerated(0.11) benign(0.03) TCGA-J9-A52D-01 11 31436377 31436377 G T DNAJC24 Missense_Mutation p.S44I 0.11 deleterious(0.01) possibly_damaging(0.828) TCGA-J9-A52D-01 11 63679992 63679992 C T RCOR2 Missense_Mutation p.G348S 0.47 deleterious(0) probably_damaging(0.999) TCGA-J9-A52D-01 12 101794883 101794883 T C ARL1 Missense_Mutation p.D98G 0.37 deleterious(0.02) benign(0.113) TCGA-J9-A52D-01 12 1219473 1219473 T G ERC1 Missense_Mutation p.M426R 0.48 deleterious(0) probably_damaging(0.968) TCGA-J9-A52D-01 12 63954301 63954301 C A DPY19L2 Missense_Mutation p.K756N 0.10 deleterious(0) benign(0.363) TCGA-J9-A52D-01 13 36402390 36402390 G T DCLK1 Silent p.G428G 0.36 TCGA-J9-A52D-01 14 24632648 24632648 G A IRF9 Silent p.R142R 0.42 TCGA-J9-A52D-01 15 42731450 42731450 C T ZNF106 Missense_Mutation p.S1419N 0.34 deleterious(0.02) probably_damaging(0.993) TCGA-J9-A52D-01 16 2293366 2293366 G A ECI1 Silent p.Y172Y 0.52 TCGA-J9-A52D-01 16 71570800 71570800 C T CHST4 Missense_Mutation p.P74S 0.05 deleterious(0) probably_damaging(1) TCGA-J9-A52D-01 17 40837976 40837976 C - CNTNAP1 Frame_Shift_Del p.S240Afs*13 0.32 TCGA-J9-A52D-01 17 42328795 42328795 C T SLC4A1 Missense_Mutation p.V825I 0.35 tolerated(0.06) possibly_damaging(0.87) TCGA-J9-A52D-01 17 47696426 47696426 A T SPOP Missense_Mutation p.F133I 0.45 deleterious(0.05) probably_damaging(0.998) TCGA-J9-A52D-01 17 76472714 76472714 G A DNAH17 Silent p.D2684D 0.48 TCGA-J9-A52D-01 17 76566365 76566365 G T DNAH17 Silent p.V336V 0.47 TCGA-J9-A52D-01 18 14850347 14850347 T C ANKRD30B Missense_Mutation p.I1058T 0.27 tolerated(0.07) benign(0.122) TCGA-J9-A52D-01 18 67844063 67844063 C T RTTN Missense_Mutation p.V442M 0.08 deleterious(0.03) possibly_damaging(0.865) TCGA-J9-A52D-01 19 41350562 41350562 C - CYP2A6 Frame_Shift_Del p.S426Mfs*64 0.35 TCGA-J9-A52D-01 19 44778000 44778000 G C ZNF233 Missense_Mutation p.R396T 0.63 deleterious(0.01) benign(0.031) TCGA-J9-A52D-01 19 51330399 51330399 C G KLK15 Silent p.L72L 0.49 TCGA-J9-A52D-01 19 5789637 5789637 G A DUS3L Missense_Mutation p.R161C 0.50 tolerated(0.08) benign(0.006) TCGA-J9-A52D-01 1 196645165 196645165 G A CFH Missense_Mutation p.G133R 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-J9-A52D-01 1 41475253 41475253 C G CTPS1 Silent p.L561L 0.43 TCGA-J9-A52D-01 1 44163650 44163650 C T KDM4A Missense_Mutation p.S936F 0.58 deleterious(0) probably_damaging(0.962) TCGA-J9-A52D-01 20 257752 257752 T - C20orf96 Frame_Shift_Del p.K253Rfs*18 0.35 TCGA-J9-A52D-01 20 36500445 36500445 C G CTNNBL1 3'UTR 0.40 TCGA-J9-A52D-01 20 49446884 49446884 G A BCAS4 Missense_Mutation p.M107I 0.45 deleterious(0.04) benign(0.023) TCGA-J9-A52D-01 20 62572025 62572025 G A UCKL1 Silent p.P408P 0.41 TCGA-J9-A52D-01 2 15432834 15432834 G A NBAS Silent p.H1618H 0.41 TCGA-J9-A52D-01 2 219269079 219269081 CTT - CTDSP1 In_Frame_Del p.F241del 0.44 TCGA-J9-A52D-01 2 219269332 219269332 C G CTDSP1 3'UTR 0.50 TCGA-J9-A52D-01 2 54882330 54882330 C G SPTBN1 Missense_Mutation p.H1982Q 0.38 deleterious(0) possibly_damaging(0.751) TCGA-J9-A52D-01 5 137219176 137219176 C T MYOT Missense_Mutation p.S307L 0.36 deleterious(0) probably_damaging(1) TCGA-J9-A52D-01 5 21975394 21975394 A G CDH12 Missense_Mutation p.I111T 0.09 deleterious(0) probably_damaging(1) TCGA-J9-A52D-01 5 33937288 33937288 G A RXFP3 Nonsense_Mutation p.W148* 0.50 TCGA-J9-A52D-01 5 54442517 54442518 - TC CDC20B Nonsense_Mutation p.Y98* 0.35 TCGA-J9-A52D-01 5 98229277 98229277 C G CHD1 Missense_Mutation p.G612R 0.90 deleterious(0.03) probably_damaging(0.991) TCGA-J9-A52D-01 7 110764027 110764027 C T LRRN3 Missense_Mutation p.P400L 0.10 deleterious(0.01) probably_damaging(0.989) TCGA-J9-A52D-01 7 73475451 73475451 G A ELN Missense_Mutation p.A590T 0.51 unknown(0) TCGA-J9-A52D-01 9 116811992 116811992 G T ZNF618 Missense_Mutation p.V711L 0.07 deleterious(0.01) probably_damaging(0.997) TCGA-J9-A52D-01 9 128230300 128230300 G A MAPKAP1 Silent p.I432I 0.07 TCGA-J9-A52D-01 9 21141119 21141119 G T IFNW1 Missense_Mutation p.R151S 0.54 tolerated(0.5) benign(0.344) TCGA-J9-A52D-01 X 154294021 154294021 G C MTCP1 Missense_Mutation p.P50R 0.89 deleterious(0.01) probably_damaging(0.999) TCGA-J9-A52D-01 X 49955714 49955714 T A AKAP4 Silent p.V818V 0.85 TCGA-J9-A52D-01 X 49955731 49955733 CTG - AKAP4 In_Frame_Del p.A812del 0.83 TCGA-J9-A52D-01 X 96140003 96140003 G A RPA4 Missense_Mutation p.V232I 0.90 tolerated(0.66) benign(0) TCGA-J9-A52E-01 10 125426388 125426388 G A GPR26 Silent p.S155S 0.26 TCGA-J9-A52E-01 10 63525768 63525768 C G C10orf107 Silent p.A208A 0.39 TCGA-J9-A52E-01 11 118529706 118529706 G A TREH Missense_Mutation p.R485C 0.10 deleterious(0.02) benign(0.309) TCGA-J9-A52E-01 11 76062399 76062399 G A PRKRIR Missense_Mutation p.L599F 0.35 deleterious(0) benign(0.369) TCGA-J9-A52E-01 14 39623491 39623491 T C TRAPPC6B Missense_Mutation p.Y92C 0.29 deleterious(0) probably_damaging(0.999) TCGA-J9-A52E-01 16 88780127 88780127 G A CTU2 Missense_Mutation p.A316T 0.33 tolerated(0.12) possibly_damaging(0.788) TCGA-J9-A52E-01 17 34199342 34199342 G A CCL5 3'UTR 0.12 TCGA-J9-A52E-01 17 3977524 3977524 C A ZZEF1 Missense_Mutation p.W1202L 0.12 deleterious(0) probably_damaging(0.999) TCGA-J9-A52E-01 18 9595085 9595085 G A PPP4R1 Missense_Mutation p.S40L 0.35 deleterious(0) probably_damaging(0.997) TCGA-J9-A52E-01 19 45211203 45211203 C T CEACAM16 Silent p.T337T 0.33 TCGA-J9-A52E-01 19 56372898 56372898 G A NLRP4 Missense_Mutation p.R668H 0.34 tolerated(0.35) benign(0.002) TCGA-J9-A52E-01 19 9080484 9080484 C A MUC16 Missense_Mutation p.A3183S 0.09 unknown(0) TCGA-J9-A52E-01 1 1309669 1309669 G C AURKAIP1 Missense_Mutation p.S70C 0.24 deleterious(0.01) benign(0.004) TCGA-J9-A52E-01 1 154315375 154315375 C T ATP8B2 Missense_Mutation p.T497M 0.20 deleterious(0.02) benign(0.306) TCGA-J9-A52E-01 1 159166233 159166233 C T CADM3 Silent p.R291R 0.28 TCGA-J9-A52E-01 1 175046867 175046867 G T TNN Missense_Mutation p.V105F 0.11 tolerated(0.31) benign(0.013) TCGA-J9-A52E-01 20 54823997 54823997 C A MC3R Missense_Mutation p.A33D 0.21 tolerated(0.38) benign(0.001) TCGA-J9-A52E-01 20 58443955 58443955 G T SYCP2 Missense_Mutation p.S1256Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-J9-A52E-01 22 37770517 37770517 G A ELFN2 Missense_Mutation p.A353V 0.26 deleterious(0.02) benign(0.009) TCGA-J9-A52E-01 22 38609879 38609879 T C MAFF Missense_Mutation p.S7P 0.17 tolerated(0.25) benign(0.36) TCGA-J9-A52E-01 2 128262756 128262756 C T IWS1 Silent p.E241E 0.23 TCGA-J9-A52E-01 3 111719774 111719774 G A TAGLN3 Silent p.Q112Q 0.12 TCGA-J9-A52E-01 3 164735586 164735586 C A SI Missense_Mutation p.G1199V 0.10 deleterious(0) probably_damaging(0.932) TCGA-J9-A52E-01 4 183713808 183713808 C A TENM3 Missense_Mutation p.Q1995K 0.17 tolerated(0.33) benign(0.292) TCGA-J9-A52E-01 5 58270393 58270393 A G PDE4D 3'UTR 0.59 TCGA-J9-A52E-01 6 27777905 27777905 C A HIST1H3H Silent p.R18R 0.11 TCGA-J9-A52E-01 7 134849232 134849232 G A TMEM140 Silent p.L13L 0.11 TCGA-J9-A52E-01 7 95750489 95750489 C G SLC25A13 3'UTR 0.58 TCGA-J9-A52E-01 7 98608832 98608832 T G TRRAP Missense_Mutation p.V3685G 0.15 possibly_damaging(0.677) TCGA-J9-A52E-01 9 100975410 100975410 C G TBC1D2 Missense_Mutation p.E489Q 0.31 deleterious(0.04) possibly_damaging(0.559) TCGA-J9-A52E-01 9 90296532 90296532 A T DAPK1 Nonsense_Mutation p.K739* 0.21 TCGA-J9-A52E-01 X 15574250 15574250 C T BMX Missense_Mutation p.R670W 0.54 deleterious(0.02) possibly_damaging(0.684) TCGA-J9-A52E-01 X 99925824 99925824 G A SRPX2 Missense_Mutation p.R413H 0.61 tolerated(0.31) probably_damaging(0.999) TCGA-J9-A8CK-01 10 5009378 5009378 C G AKR1C1 Intron 0.29 TCGA-J9-A8CK-01 10 61848065 61848065 G A ANK3 Missense_Mutation p.T1127M 0.42 probably_damaging(1) TCGA-J9-A8CK-01 10 96731943 96731943 C T CYP2C9 Missense_Mutation p.T301M 0.25 deleterious(0) probably_damaging(0.969) TCGA-J9-A8CK-01 11 122023002 122023002 G A MIR100 RNA 0.19 TCGA-J9-A8CK-01 11 55038484 55038484 C A TRIM48 3'UTR 0.25 TCGA-J9-A8CK-01 12 118533490 118533490 T C VSIG10 Missense_Mutation p.N70S 0.29 tolerated(0.56) benign(0.05) TCGA-J9-A8CK-01 12 12038866 12038866 A G ETV6 Missense_Mutation p.T387A 0.08 tolerated(0.24) benign(0.012) TCGA-J9-A8CK-01 12 64174844 64174844 A G TMEM5 Missense_Mutation p.D72G 0.25 deleterious(0) probably_damaging(0.995) TCGA-J9-A8CK-01 14 105818770 105818770 T C PACS2 Missense_Mutation p.V88A 0.20 tolerated(0.07) possibly_damaging(0.539) TCGA-J9-A8CK-01 15 58925526 58925526 G A ADAM10 Missense_Mutation p.L349F 0.26 tolerated(0.07) benign(0.038) TCGA-J9-A8CK-01 17 7577102 7577102 C T TP53 Missense_Mutation p.G279E 0.50 deleterious(0) probably_damaging(0.999) TCGA-J9-A8CK-01 19 9049442 9049442 G A MUC16 Missense_Mutation p.S10730L 0.27 benign(0.402) TCGA-J9-A8CK-01 1 159162404 159162404 C T CADM3 Missense_Mutation p.T123M 0.27 deleterious(0) possibly_damaging(0.849) TCGA-J9-A8CK-01 20 54573593 54573593 C A CBLN4 3'UTR 0.23 TCGA-J9-A8CK-01 2 175618303 175618303 C T CHRNA1 Missense_Mutation p.V261I 0.19 tolerated(1) benign(0.035) TCGA-J9-A8CK-01 3 129182397 129182397 T C IFT122 Intron 0.29 TCGA-J9-A8CK-01 3 137802957 137802957 T A DZIP1L Missense_Mutation p.M401L 0.25 tolerated(0.13) benign(0.008) TCGA-J9-A8CK-01 3 52786023 52786023 G C NEK4 Missense_Mutation p.D431E 0.29 tolerated(1) benign(0.011) TCGA-J9-A8CK-01 3 71745611 71745611 C T EIF4E3 Silent p.T135T 0.23 TCGA-J9-A8CK-01 4 95204449 95204449 G T SMARCAD1 Missense_Mutation p.Q970H 0.09 deleterious(0) probably_damaging(1) TCGA-J9-A8CK-01 6 131191226 131191226 C T EPB41L2 Missense_Mutation p.R695Q 0.15 tolerated(1) benign(0.001) TCGA-J9-A8CK-01 6 152420002 152420002 G A ESR1 Silent p.T563T 0.07 TCGA-J9-A8CK-01 6 47846814 47846814 C T PTCHD4 Missense_Mutation p.R589Q 0.21 tolerated(0.52) benign(0.097) TCGA-J9-A8CK-01 7 137569752 137569752 G - CREB3L2 Frame_Shift_Del p.T420Kfs*5 0.15 TCGA-J9-A8CK-01 9 114820961 114820961 T C SUSD1 Missense_Mutation p.Y619C 0.14 deleterious(0) probably_damaging(0.999) TCGA-J9-A8CK-01 9 137642401 137642401 G A COL5A1 Missense_Mutation p.R503H 0.24 probably_damaging(0.998) TCGA-J9-A8CK-01 X 144337277 144337277 T C SPANXN1 Silent p.F54F 0.05 TCGA-J9-A8CK-01 X 49689925 49689925 G T CLCN5 Splice_Site p.X6_splice 0.43 TCGA-J9-A8CL-01 11 125255503 125255503 A T PKNOX2 Missense_Mutation p.Q95L 0.29 tolerated(0.2) benign(0.062) TCGA-J9-A8CL-01 11 59611368 59611368 C T GIF Missense_Mutation p.M80I 0.18 tolerated(0.57) benign(0.004) TCGA-J9-A8CL-01 11 66985327 66985327 G A KDM2A Silent p.K271K 0.09 TCGA-J9-A8CL-01 12 48439086 48439086 C A SENP1 3'UTR 0.32 TCGA-J9-A8CL-01 12 56397664 56397664 A T SUOX Missense_Mutation p.D164V 0.11 deleterious(0.01) benign(0.004) TCGA-J9-A8CL-01 14 23851721 23851721 C G MYH6 Missense_Mutation p.E1904D 0.28 deleterious(0.02) possibly_damaging(0.896) TCGA-J9-A8CL-01 14 70989610 70989610 C T ADAM20 Missense_Mutation p.R672H 0.32 tolerated(1) benign(0.003) TCGA-J9-A8CL-01 14 74537998 74537998 T C ALDH6A1 Silent p.P210P 0.36 TCGA-J9-A8CL-01 15 26866590 26866590 C T GABRB3 Missense_Mutation p.R111Q 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-J9-A8CL-01 16 21854800 21854800 G C NPIPB4 Missense_Mutation p.T151R 0.16 benign(0.28) TCGA-J9-A8CL-01 16 2284613 2284613 C T E4F1 Silent p.H541H 0.27 TCGA-J9-A8CL-01 16 31409184 31409184 G T ITGAD Silent p.L127L 0.21 TCGA-J9-A8CL-01 17 37607333 37607333 G C MED1 5'UTR 0.40 TCGA-J9-A8CL-01 17 37607379 37607379 G A MED1 5'UTR 0.36 TCGA-J9-A8CL-01 17 37607479 37607479 G A MED1 5'UTR 0.70 TCGA-J9-A8CL-01 17 71189377 71189377 C T COG1 Missense_Mutation p.R57C 0.17 deleterious(0) probably_damaging(1) TCGA-J9-A8CL-01 18 34740282 34740282 C T KIAA1328 Missense_Mutation p.S451L 0.29 tolerated(0.05) benign(0.01) TCGA-J9-A8CL-01 18 70526274 70526274 C A NETO1 Nonsense_Mutation p.E86* 0.38 TCGA-J9-A8CL-01 19 22941153 22941153 G T ZNF99 Missense_Mutation p.H520N 0.35 tolerated(0.38) possibly_damaging(0.467) TCGA-J9-A8CL-01 19 8651510 8651510 G A ADAMTS10 Nonsense_Mutation p.R779* 0.25 TCGA-J9-A8CL-01 1 108231002 108231002 C T VAV3 Splice_Site p.X577_splice 0.33 TCGA-J9-A8CL-01 1 110210694 110210694 C T GSTM2 5'UTR 0.10 TCGA-J9-A8CL-01 1 13330550 13330550 G A PRAMEF3 Missense_Mutation p.R246C 0.45 tolerated(0.13) benign(0.001) TCGA-J9-A8CL-01 1 150234607 150234607 T A CA14 Missense_Mutation p.Y103N 0.05 deleterious(0) probably_damaging(1) TCGA-J9-A8CL-01 1 158262542 158262542 C T CD1C Missense_Mutation p.P256L 0.30 deleterious(0) probably_damaging(0.988) TCGA-J9-A8CL-01 1 158988127 158988127 A G IFI16 Missense_Mutation p.T220A 0.47 tolerated(0.61) benign(0.009) TCGA-J9-A8CL-01 1 159284004 159284004 G A OR10J3 Missense_Mutation p.S149L 0.12 deleterious(0.03) possibly_damaging(0.542) TCGA-J9-A8CL-01 1 160012031 160012031 C G KCNJ10 Missense_Mutation p.E98Q 0.33 tolerated(0.41) benign(0.105) TCGA-J9-A8CL-01 1 160321118 160321118 G C NCSTN Missense_Mutation p.C230S 0.14 deleterious(0) probably_damaging(1) TCGA-J9-A8CL-01 1 161179951 161179951 C G NDUFS2 Missense_Mutation p.F251L 0.58 deleterious(0.03) possibly_damaging(0.521) TCGA-J9-A8CL-01 1 171753168 171753168 C T METTL13 Missense_Mutation p.R148C 0.72 deleterious(0) probably_damaging(1) TCGA-J9-A8CL-01 20 17479638 17479638 G A BFSP1 Silent p.D261D 0.10 TCGA-J9-A8CL-01 20 24993264 24993264 C T ACSS1 Missense_Mutation p.G582S 0.33 deleterious(0.02) benign(0.356) TCGA-J9-A8CL-01 20 48166725 48166725 G A PTGIS Nonsense_Mutation p.R26* 0.20 TCGA-J9-A8CL-01 22 50217771 50217771 G A BRD1 Silent p.L65L 0.41 TCGA-J9-A8CL-01 2 103353178 103353178 T A MFSD9 Missense_Mutation p.E31V 0.16 tolerated_low_confidence(0.25) benign(0) TCGA-J9-A8CL-01 2 128335737 128335737 C T MYO7B Silent p.N293N 0.35 TCGA-J9-A8CL-01 2 171884862 171884862 C G TLK1 Missense_Mutation p.G408A 0.18 tolerated(0.64) benign(0.117) TCGA-J9-A8CL-01 2 179485645 179485645 A G TTN Missense_Mutation p.V15231A 0.15 TCGA-J9-A8CL-01 2 185802145 185802145 T A ZNF804A Nonsense_Mutation p.C674* 0.06 TCGA-J9-A8CL-01 2 220046151 220046151 A T FAM134A Missense_Mutation p.E282V 0.25 deleterious(0) possibly_damaging(0.711) TCGA-J9-A8CL-01 2 225662683 225662683 G A DOCK10 Nonsense_Mutation p.Q1504* 0.08 TCGA-J9-A8CL-01 2 228890233 228890233 G A SPHKAP Silent p.N106N 0.17 TCGA-J9-A8CL-01 3 12187209 12187209 G A SYN2 RNA 0.07 TCGA-J9-A8CL-01 3 122645513 122645513 C T SEMA5B Missense_Mutation p.V342M 0.14 deleterious(0.01) benign(0.394) TCGA-J9-A8CL-01 3 124374511 124374511 G T KALRN Silent p.V44V 0.12 TCGA-J9-A8CL-01 3 124951540 124951540 C A ZNF148 Missense_Mutation p.G677V 0.37 deleterious(0) possibly_damaging(0.834) TCGA-J9-A8CL-01 3 130743334 130743334 G A ASTE1 Silent p.L273L 0.28 TCGA-J9-A8CL-01 3 178928235 178928235 A C PIK3CA Missense_Mutation p.E474A 0.42 deleterious(0.03) possibly_damaging(0.844) TCGA-J9-A8CL-01 3 40231654 40231654 G A MYRIP Silent p.S455S 0.42 TCGA-J9-A8CL-01 4 165962535 165962535 C G TRIM60 Silent p.L437L 0.29 TCGA-J9-A8CL-01 4 39290294 39290294 C A RFC1 3'UTR 0.18 TCGA-J9-A8CL-01 5 140783471 140783471 G C PCDHGA9 Missense_Mutation p.E318Q 0.54 deleterious_low_confidence(0) possibly_damaging(0.758) TCGA-J9-A8CL-01 5 149212575 149212575 C G PPARGC1B Silent p.P313P 0.10 TCGA-J9-A8CL-01 5 83476237 83476237 C A EDIL3 Missense_Mutation p.G110V 0.11 deleterious(0) probably_damaging(1) TCGA-J9-A8CL-01 6 128134112 128134112 C T THEMIS Silent p.P558P 0.33 TCGA-J9-A8CL-01 6 152576788 152576788 G A SYNE1 Missense_Mutation p.R6400C 0.11 benign(0.005) TCGA-J9-A8CL-01 6 74063588 74063588 G A DPPA5 Missense_Mutation p.R94C 0.19 deleterious(0.03) possibly_damaging(0.897) TCGA-J9-A8CL-01 7 126086370 126086370 A T GRM8 Silent p.S829S 0.36 TCGA-J9-A8CL-01 7 151855999 151855999 C T KMT2C Silent p.E3873E 0.19 TCGA-J9-A8CL-01 7 81714091 81714091 A C CACNA2D1 Missense_Mutation p.Y218D 0.34 deleterious(0) probably_damaging(0.977) TCGA-J9-A8CL-01 8 110412425 110412425 C A PKHD1L1 Missense_Mutation p.S378Y 0.05 tolerated(0.16) probably_damaging(0.973) TCGA-J9-A8CL-01 8 125464558 125464558 C T TRMT12 3'UTR 0.07 TCGA-J9-A8CL-01 9 128724390 128724390 G A PBX3 Missense_Mutation p.G340D 0.22 deleterious(0.02) possibly_damaging(0.461) TCGA-J9-A8CL-01 9 139265071 139265071 G C CARD9 Missense_Mutation p.A237G 0.15 tolerated(0.14) possibly_damaging(0.67) TCGA-J9-A8CL-01 9 140051399 140051399 A T GRIN1 Missense_Mutation p.H314L 0.38 tolerated(0.33) benign(0.065) TCGA-J9-A8CL-01 X 100511155 100511155 G A DRP2 Silent p.R765R 0.64 TCGA-J9-A8CL-01 X 117742298 117742298 A G DOCK11 Silent p.L952L 0.23 TCGA-J9-A8CL-01 X 20190906 20190906 C T RPS6KA3 Silent p.K437K 0.27 TCGA-J9-A8CM-01 10 108434806 108434806 C T SORCS1 Splice_Site p.X647_splice 0.33 TCGA-J9-A8CM-01 10 16919012 16919020 GTAGCAAAT - CUBN In_Frame_Del p.F2995_T2997del 0.17 TCGA-J9-A8CM-01 10 27323868 27323868 A C ANKRD26 Missense_Mutation p.F1171V 0.30 tolerated(0.07) possibly_damaging(0.684) TCGA-J9-A8CM-01 10 99426205 99426205 C G PI4K2A Nonsense_Mutation p.Y335* 0.30 TCGA-J9-A8CM-01 11 10580630 10580630 C A LYVE1 3'UTR 0.21 TCGA-J9-A8CM-01 11 116701559 116701559 C A APOC3 Silent p.T42T 0.27 TCGA-J9-A8CM-01 11 55541529 55541529 A G OR5D13 Missense_Mutation p.I206V 0.26 tolerated(0.09) benign(0.013) TCGA-J9-A8CM-01 11 59189575 59189575 G A OR5A2 Silent p.P284P 0.15 TCGA-J9-A8CM-01 11 65421838 65421838 G A RELA 3'UTR 0.24 TCGA-J9-A8CM-01 11 68359047 68359047 A G PPP6R3 Missense_Mutation p.N597D 0.11 deleterious(0.01) probably_damaging(0.979) TCGA-J9-A8CM-01 11 86131085 86131085 G A CCDC81 Missense_Mutation p.A603T 0.29 tolerated(0.33) benign(0.373) TCGA-J9-A8CM-01 12 119583327 119583327 C T SRRM4 Missense_Mutation p.R305W 0.24 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-J9-A8CM-01 12 56296006 56296006 G A WIBG Missense_Mutation p.R89C 0.37 deleterious(0.03) benign(0.051) TCGA-J9-A8CM-01 13 111973280 111973280 C T TEX29 Silent p.L15L 0.12 TCGA-J9-A8CM-01 13 32911237 32911237 T - BRCA2 Frame_Shift_Del p.C916Vfs*2 0.23 TCGA-J9-A8CM-01 14 104251154 104251154 G A PPP1R13B Silent p.S85S 0.09 TCGA-J9-A8CM-01 14 106174901 106174901 C G IGHA1 Missense_Mutation p.Q34H 0.31 deleterious(0.02) possibly_damaging(0.887) TCGA-J9-A8CM-01 14 57268368 57268368 C A OTX2 3'UTR 0.14 TCGA-J9-A8CM-01 14 57960372 57960372 T C C14orf105 Missense_Mutation p.K21R 0.19 tolerated(0.28) possibly_damaging(0.713) TCGA-J9-A8CM-01 14 60749576 60749576 C A PPM1A Nonsense_Mutation p.S125* 0.05 TCGA-J9-A8CM-01 14 70480116 70480116 G A SMOC1 Silent p.G318G 0.36 TCGA-J9-A8CM-01 15 40675138 40675138 T C KNSTRN Silent p.F34F 0.21 TCGA-J9-A8CM-01 15 72636337 72636337 C A HEXA 3'UTR 0.29 TCGA-J9-A8CM-01 15 72636338 72636338 C A HEXA 3'UTR 0.29 TCGA-J9-A8CM-01 15 74467974 74467974 G A ISLR Missense_Mutation p.V259M 0.21 deleterious(0.03) possibly_damaging(0.883) TCGA-J9-A8CM-01 15 77907021 77907021 A T LINGO1 Missense_Mutation p.F410I 0.31 deleterious(0.04) possibly_damaging(0.836) TCGA-J9-A8CM-01 15 85626866 85626866 T A PDE8A Missense_Mutation p.L209Q 0.17 deleterious(0.03) possibly_damaging(0.896) TCGA-J9-A8CM-01 16 14540829 14540829 T A PARN Missense_Mutation p.T594S 0.28 tolerated_low_confidence(0.35) benign(0.001) TCGA-J9-A8CM-01 16 30795098 30795098 C T ZNF629 Missense_Mutation p.G184D 0.14 deleterious(0) probably_damaging(0.999) TCGA-J9-A8CM-01 16 3100525 3100525 G T MMP25 Missense_Mutation p.E213D 0.25 deleterious(0) probably_damaging(0.987) TCGA-J9-A8CM-01 16 57718006 57718006 C T GPR97 Silent p.F348F 0.25 TCGA-J9-A8CM-01 16 67688783 67688799 GCCGAAGGCAAGAGGAA - RLTPR Frame_Shift_Del p.E1230Kfs*14 0.20 TCGA-J9-A8CM-01 16 77396062 77396062 C A ADAMTS18 Missense_Mutation p.A386S 0.09 tolerated(0.07) probably_damaging(0.979) TCGA-J9-A8CM-01 16 87960438 87960438 A G CA5A Missense_Mutation p.S86P 0.39 deleterious(0.01) possibly_damaging(0.788) TCGA-J9-A8CM-01 17 10432520 10432520 C A MYH2 Missense_Mutation p.A1105S 0.15 tolerated(0.32) benign(0.053) TCGA-J9-A8CM-01 17 41004623 41004623 C G AOC3 Silent p.A421A 0.18 TCGA-J9-A8CM-01 17 48182745 48182745 A C PDK2 Missense_Mutation p.S91R 0.31 deleterious(0) probably_damaging(1) TCGA-J9-A8CM-01 17 60765674 60765674 C T MRC2 Missense_Mutation p.P991S 0.26 tolerated(0.14) benign(0.011) TCGA-J9-A8CM-01 17 8350176 8350176 G T NDEL1 Silent p.V115V 0.26 TCGA-J9-A8CM-01 19 13919900 13919900 G A ZSWIM4 Missense_Mutation p.R293Q 0.33 deleterious(0.02) benign(0.417) TCGA-J9-A8CM-01 19 15465675 15465675 G C AKAP8 3'UTR 0.11 TCGA-J9-A8CM-01 19 41897754 41897754 C T EXOSC5 Missense_Mutation p.A126T 0.32 tolerated(0.35) benign(0.02) TCGA-J9-A8CM-01 19 51958791 51958791 C T SIGLEC8 Missense_Mutation p.G311E 0.29 tolerated(0.05) benign(0.329) TCGA-J9-A8CM-01 19 55255451 55255451 A C KIR2DL3 Silent p.G193G 0.35 TCGA-J9-A8CM-01 1 114308829 114308829 G T RSBN1 Silent p.R728R 0.27 TCGA-J9-A8CM-01 1 12907854 12907854 C T HNRNPCL1 Missense_Mutation p.V97M 0.09 tolerated(0.06) benign(0.103) TCGA-J9-A8CM-01 1 161326632 161326632 T C SDHC Splice_Site p.X135_splice 0.25 TCGA-J9-A8CM-01 1 180235656 180235656 G C LHX4 Silent p.T126T 0.57 TCGA-J9-A8CM-01 1 198711451 198711451 T C PTPRC Silent p.Y884Y 0.15 TCGA-J9-A8CM-01 1 203787773 203787773 C G ZC3H11A Missense_Mutation p.R44G 0.21 deleterious(0) probably_damaging(0.979) TCGA-J9-A8CM-01 1 216256915 216256915 A T USH2A Silent p.L1727L 0.16 TCGA-J9-A8CM-01 1 229568583 229568583 G A ACTA1 Silent p.D58D 0.15 TCGA-J9-A8CM-01 1 25549661 25549661 A G SYF2 3'UTR 0.26 TCGA-J9-A8CM-01 20 30418922 30418922 A G MYLK2 Missense_Mutation p.M468V 0.35 tolerated(1) benign(0.063) TCGA-J9-A8CM-01 20 33875275 33875275 G T FAM83C Missense_Mutation p.P436H 0.29 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-J9-A8CM-01 20 36686047 36686047 G T RPRD1B Splice_Site p.X176_splice 0.37 TCGA-J9-A8CM-01 22 16287429 16287429 T G POTEH Missense_Mutation p.K153Q 0.25 deleterious(0.03) benign(0.254) TCGA-J9-A8CM-01 22 38494424 38494424 G A BAIAP2L2 Silent p.F114F 0.16 TCGA-J9-A8CM-01 2 116534830 116534830 G T DPP10 Missense_Mutation p.W427L 0.14 deleterious(0) probably_damaging(0.994) TCGA-J9-A8CM-01 2 24239744 24239744 T C MFSD2B Missense_Mutation p.L126P 0.28 deleterious(0.04) possibly_damaging(0.811) TCGA-J9-A8CM-01 3 134920475 134920475 G T EPHB1 Missense_Mutation p.G764C 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-J9-A8CM-01 3 184800664 184800664 A T C3orf70 3'UTR 0.29 TCGA-J9-A8CM-01 3 193082032 193082032 G A ATP13A5 Missense_Mutation p.A34V 0.36 tolerated(0.24) benign(0.057) TCGA-J9-A8CM-01 3 27760935 27760935 A T EOMES Silent p.T358T 0.22 TCGA-J9-A8CM-01 3 36872850 36872850 T A TRANK1 Missense_Mutation p.T2698S 0.21 tolerated(0.77) benign(0.001) TCGA-J9-A8CM-01 3 44612891 44612891 G T ZKSCAN7 3'UTR 0.26 TCGA-J9-A8CM-01 3 52858573 52858573 T G ITIH4 Missense_Mutation p.E295D 0.22 tolerated(0.42) probably_damaging(0.996) TCGA-J9-A8CM-01 4 120214179 120214179 G T USP53 Missense_Mutation p.G1012V 0.32 deleterious_low_confidence(0.03) benign(0.157) TCGA-J9-A8CM-01 4 47538814 47538814 C A ATP10D Missense_Mutation p.Q419K 0.20 deleterious(0.02) benign(0.082) TCGA-J9-A8CM-01 5 1065496 1065496 G A SLC12A7 Missense_Mutation p.S780L 0.31 deleterious(0) benign(0.386) TCGA-J9-A8CM-01 5 121786541 121786541 C A SNCAIP Missense_Mutation p.L667M 0.28 deleterious(0) probably_damaging(0.999) TCGA-J9-A8CM-01 5 140167838 140167838 G A PCDHA1 Missense_Mutation p.G655S 0.20 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-J9-A8CM-01 5 140788913 140788913 G A PCDHGB6 Missense_Mutation p.V382I 0.32 tolerated(0.17) possibly_damaging(0.498) TCGA-J9-A8CM-01 5 156915452 156915452 G A ADAM19 Missense_Mutation p.P791S 0.27 tolerated(0.14) possibly_damaging(0.548) TCGA-J9-A8CM-01 5 43280301 43280301 T C NIM1K Silent p.L261L 0.06 TCGA-J9-A8CM-01 5 79965959 79965959 C T MSH3 Missense_Mutation p.T208I 0.07 tolerated(0.19) benign(0.008) TCGA-J9-A8CM-01 6 25551235 25551235 A G LRRC16A Missense_Mutation p.E809G 0.14 tolerated(0.25) benign(0.008) TCGA-J9-A8CM-01 6 27791912 27791912 C T HIST1H4J Missense_Mutation p.R4C 0.23 tolerated_low_confidence(0.06) benign(0.012) TCGA-J9-A8CM-01 6 31499163 31499163 G C DDX39B Missense_Mutation p.S296C 0.19 deleterious(0.02) benign(0.074) TCGA-J9-A8CM-01 6 33245707 33245707 G A B3GALT4 Missense_Mutation p.V171I 0.05 tolerated(0.85) benign(0.034) TCGA-J9-A8CM-01 6 33255194 33255194 G A WDR46 Missense_Mutation p.R273C 0.25 deleterious(0) probably_damaging(0.991) TCGA-J9-A8CM-01 6 42936629 42936629 C T PEX6 Missense_Mutation p.G488R 0.17 deleterious(0.01) possibly_damaging(0.566) TCGA-J9-A8CM-01 6 56035506 56035506 T A COL21A1 Missense_Mutation p.T323S 0.18 tolerated(0.1) benign(0.091) TCGA-J9-A8CM-01 6 84269827 84269827 G A SNAP91 Missense_Mutation p.T876M 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-J9-A8CM-01 7 123296111 123296111 G C LMOD2 Missense_Mutation p.E32Q 0.60 tolerated(0.08) probably_damaging(0.999) TCGA-J9-A8CM-01 7 150754243 150754243 G C CDK5 Silent p.T14T 0.31 TCGA-J9-A8CM-01 7 30491972 30491972 G A NOD1 Missense_Mutation p.P354L 0.21 deleterious(0.02) possibly_damaging(0.828) TCGA-J9-A8CM-01 7 39500237 39500237 T A POU6F2 Silent p.L498L 0.40 TCGA-J9-A8CM-01 7 98256572 98256572 C T NPTX2 Silent p.D328D 0.12 TCGA-J9-A8CM-01 7 99704994 99704994 G T TAF6 Missense_Mutation p.P674T 0.31 tolerated_low_confidence(0.27) benign(0.001) TCGA-J9-A8CM-01 8 57079728 57079728 G A PLAG1 Missense_Mutation p.R193W 0.08 deleterious(0.04) probably_damaging(0.993) TCGA-J9-A8CM-01 9 108536384 108536384 G A TMEM38B 3'UTR 0.25 TCGA-J9-A8CM-01 9 117168903 117168904 - G DFNB31 Frame_Shift_Ins p.A657Cfs*81 0.17 TCGA-J9-A8CM-01 9 135073943 135073943 G T NTNG2 Silent p.R268R 0.36 TCGA-J9-A8CM-01 9 14846021 14846021 C T FREM1 Missense_Mutation p.D444N 0.44 tolerated(1) benign(0.002) TCGA-J9-A8CM-01 X 85769329 85769329 A G DACH2 Missense_Mutation p.E192G 0.75 tolerated(0.13) benign(0.065) TCGA-J9-A8CM-01 X 94318184 94318184 T A MIR548M RNA 0.33 TCGA-J9-A8CN-01 14 23885342 23885342 G T MYH7 Silent p.R1608R 0.10 TCGA-J9-A8CN-01 15 101595338 101595338 G A LRRK1 Silent p.R1414R 0.37 TCGA-J9-A8CN-01 15 59910661 59910661 G A GCNT3 Missense_Mutation p.R75Q 0.40 tolerated(0.83) benign(0.005) TCGA-J9-A8CN-01 16 2158549 2158549 G A PKD1 Missense_Mutation p.P2207S 0.13 benign(0.369) TCGA-J9-A8CN-01 16 84121008 84121008 A C MBTPS1 Missense_Mutation p.F363L 0.15 deleterious(0.03) possibly_damaging(0.876) TCGA-J9-A8CN-01 17 10318896 10318896 C T MYH8 Missense_Mutation p.G181R 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-J9-A8CN-01 19 16611793 16611793 C A C19orf44 Missense_Mutation p.L64M 0.39 tolerated(0.21) possibly_damaging(0.878) TCGA-J9-A8CN-01 19 23544860 23544860 T A ZNF91 Silent p.S307S 0.38 TCGA-J9-A8CN-01 19 51330248 51330248 G A KLK15 Missense_Mutation p.R123C 0.21 deleterious(0.04) benign(0.094) TCGA-J9-A8CN-01 19 52115643 52115643 G A SIGLEC5 Silent p.P499P 0.48 TCGA-J9-A8CN-01 1 197887072 197887072 G T LHX9 Missense_Mutation p.R40I 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-J9-A8CN-01 1 39908220 39908220 T C MACF1 Missense_Mutation p.V4303A 0.09 possibly_damaging(0.9) TCGA-J9-A8CN-01 20 60485514 60485514 G A CDH4 Missense_Mutation p.V409M 0.38 deleterious(0.04) possibly_damaging(0.87) TCGA-J9-A8CN-01 21 45745845 45745845 G A PFKL Missense_Mutation p.G664D 0.47 deleterious(0) probably_damaging(0.999) TCGA-J9-A8CN-01 2 1480927 1480927 G A TPO Missense_Mutation p.G297S 0.27 tolerated(0.11) possibly_damaging(0.6) TCGA-J9-A8CN-01 2 217724631 217724631 G A TNP1 Missense_Mutation p.R43W 0.32 tolerated_low_confidence(0.05) probably_damaging(0.998) TCGA-J9-A8CN-01 3 142145597 142145597 C T XRN1 Missense_Mutation p.C132Y 0.44 deleterious(0) probably_damaging(0.971) TCGA-J9-A8CN-01 3 8578934 8578934 C T LMCD1 Silent p.D65D 0.37 TCGA-J9-A8CN-01 5 114598551 114598551 T C PGGT1B 5'UTR 0.38 TCGA-J9-A8CN-01 5 140603045 140603045 C A PCDHB14 5'Flank 0.44 TCGA-J9-A8CN-01 6 30859877 30859877 A G DDR1 Missense_Mutation p.Y255C 0.06 deleterious(0) benign(0.29) TCGA-J9-A8CN-01 8 125555467 125555467 A G NDUFB9 Missense_Mutation p.I81V 0.08 tolerated(0.49) benign(0.007) TCGA-J9-A8CN-01 9 126146148 126146148 C T DENND1A Missense_Mutation p.G541D 0.05 deleterious(0.04) benign(0.157) TCGA-J9-A8CN-01 9 135979208 135979208 C T RALGDS Missense_Mutation p.G562S 0.32 deleterious(0) unknown(0) TCGA-J9-A8CN-01 9 139802603 139802603 C T TRAF2 Missense_Mutation p.R150C 0.09 deleterious(0.01) benign(0.339) TCGA-J9-A8CN-01 X 14748663 14748663 C A GLRA2 3'UTR 0.20 TCGA-J9-A8CP-01 10 118969534 118969534 C A KCNK18 Nonsense_Mutation p.Y293* 0.05 TCGA-J9-A8CP-01 10 119078421 119078421 T C PDZD8 Missense_Mutation p.S354G 0.37 tolerated(0.76) benign(0) TCGA-J9-A8CP-01 10 70940179 70940179 C T SUPV3L1 Silent p.V44V 0.25 TCGA-J9-A8CP-01 11 57069307 57069307 G A TNKS1BP1 Missense_Mutation p.P1649S 0.29 deleterious(0) probably_damaging(0.987) TCGA-J9-A8CP-01 12 43821152 43821152 G T ADAMTS20 Missense_Mutation p.P1356T 0.21 tolerated(0.18) benign(0.006) TCGA-J9-A8CP-01 12 56720445 56720445 T C PAN2 Silent p.T406T 0.31 TCGA-J9-A8CP-01 12 6711128 6711128 T C CHD4 Missense_Mutation p.K146E 0.22 tolerated_low_confidence(0.21) possibly_damaging(0.636) TCGA-J9-A8CP-01 12 68642636 68642636 G C IL22 Missense_Mutation p.I161M 0.03 tolerated(0.06) probably_damaging(0.983) TCGA-J9-A8CP-01 14 38061198 38061208 TTCTGGCGGCG CTCT FOXA1 Frame_Shift_Del p.R262Gfs*57 0.26 TCGA-J9-A8CP-01 15 50782019 50782019 A G USP8 Missense_Mutation p.R638G 0.29 deleterious(0) probably_damaging(0.942) TCGA-J9-A8CP-01 17 60061727 60061727 T C MED13 Missense_Mutation p.D898G 0.32 deleterious(0) probably_damaging(0.998) TCGA-J9-A8CP-01 17 73487841 73487841 C T KIAA0195 Missense_Mutation p.R486C 0.27 tolerated(0.14) benign(0.001) TCGA-J9-A8CP-01 17 8380302 8380302 G A MYH10 Missense_Mutation p.A1924V 0.28 possibly_damaging(0.821) TCGA-J9-A8CP-01 19 14268133 14268133 T C LPHN1 Missense_Mutation p.K897R 0.25 deleterious(0.04) probably_damaging(0.995) TCGA-J9-A8CP-01 19 40370528 40370528 C T FCGBP Silent p.P4046P 0.36 TCGA-J9-A8CP-01 19 49979782 49979782 G A FLT3LG Missense_Mutation p.V101M 0.06 tolerated(0.07) probably_damaging(0.93) TCGA-J9-A8CP-01 1 159043307 159043307 A G AIM2 Intron 0.04 TCGA-J9-A8CP-01 1 161140216 161140216 G A PPOX Silent p.V335V 0.36 TCGA-J9-A8CP-01 20 33068460 33068460 T A ITCH Silent p.R666R 0.29 TCGA-J9-A8CP-01 22 29924168 29924168 T C THOC5 Splice_Site p.X323_splice 0.34 TCGA-J9-A8CP-01 22 50720454 50720454 C G PLXNB2 Silent p.P1058P 0.33 TCGA-J9-A8CP-01 2 15415631 15415631 A C NBAS Missense_Mutation p.F1901V 0.24 deleterious(0) probably_damaging(0.993) TCGA-J9-A8CP-01 2 196737041 196737041 C A DNAH7 Missense_Mutation p.G2189V 0.07 deleterious(0) probably_damaging(1) TCGA-J9-A8CP-01 2 86305380 86305380 G C POLR1A Missense_Mutation p.R372G 0.09 deleterious(0.01) possibly_damaging(0.734) TCGA-J9-A8CP-01 3 150404109 150404109 C G FAM194A Missense_Mutation p.E196Q 0.19 tolerated(0.16) benign(0.106) TCGA-J9-A8CP-01 3 47270110 47270110 G C KIF9 3'UTR 0.32 TCGA-J9-A8CP-01 4 155219735 155219735 G T DCHS2 Missense_Mutation p.P1456T 0.32 tolerated(0.09) probably_damaging(0.942) TCGA-J9-A8CP-01 4 56304467 56304467 T G CLOCK Silent p.P781P 0.36 TCGA-J9-A8CP-01 5 138941917 138941917 G A UBE2D2 Intron 0.15 TCGA-J9-A8CP-01 5 140188986 140188986 G A PCDHA4 Silent p.T738T 0.25 TCGA-J9-A8CP-01 5 24488218 24488219 - T CDH10 Frame_Shift_Ins p.E641Rfs*18 0.13 TCGA-J9-A8CP-01 5 24535310 24535310 A G CDH10 Missense_Mutation p.M242T 0.30 deleterious(0) possibly_damaging(0.874) TCGA-J9-A8CP-01 5 36976330 36976330 A C NIPBL Missense_Mutation p.T441P 0.30 tolerated_low_confidence(0.05) benign(0.001) TCGA-J9-A8CP-01 5 55407577 55407577 C T ANKRD55 Missense_Mutation p.S333N 0.05 tolerated_low_confidence(1) benign(0) TCGA-J9-A8CP-01 5 93077212 93077212 C T POU5F2 Missense_Mutation p.G20S 0.61 tolerated(0.36) possibly_damaging(0.862) TCGA-J9-A8CP-01 6 30314252 30314252 C T RPP21 Silent p.C103C 0.05 TCGA-J9-A8CP-01 7 113519322 113519322 C T PPP1R3A Missense_Mutation p.A609T 0.10 tolerated(1) benign(0.001) TCGA-J9-A8CP-01 9 34517406 34517406 G A DNAI1 Missense_Mutation p.D648N 0.34 deleterious(0) possibly_damaging(0.889) TCGA-KC-A4BL-01 11 60668386 60668386 T C PRPF19 Missense_Mutation p.S220G 0.09 tolerated(0.13) benign(0.013) TCGA-KC-A4BL-01 11 65426194 65426194 T C RELA Missense_Mutation p.Q220R 0.10 deleterious(0) probably_damaging(0.987) TCGA-KC-A4BL-01 12 1192464 1192464 G T ERC1 Missense_Mutation p.Q268H 0.12 tolerated(0.58) possibly_damaging(0.617) TCGA-KC-A4BL-01 13 114290866 114290866 A G TFDP1 Missense_Mutation p.N286S 0.05 deleterious(0.04) benign(0.308) TCGA-KC-A4BL-01 15 42041985 42041986 AG - MGA Frame_Shift_Del p.D2061Lfs*2 0.11 TCGA-KC-A4BL-01 17 39383026 39383026 C T KRTAP9-2 Silent p.P40P 0.05 TCGA-KC-A4BL-01 17 77807801 77807801 G A CBX4 Missense_Mutation p.A547V 0.05 deleterious(0.01) probably_damaging(0.939) TCGA-KC-A4BL-01 18 12986964 12986964 G A SEH1L Missense_Mutation p.D392N 0.06 deleterious_low_confidence(0) benign(0.174) TCGA-KC-A4BL-01 19 52496292 52496292 C T ZNF615 Silent p.P690P 0.05 TCGA-KC-A4BL-01 19 54822827 54822827 G A LILRA5 Missense_Mutation p.T190I 0.05 tolerated(0.46) benign(0.005) TCGA-KC-A4BL-01 1 12726318 12726318 G A AADACL4 Missense_Mutation p.A266T 0.04 tolerated(0.23) possibly_damaging(0.595) TCGA-KC-A4BL-01 1 156845394 156845394 C T NTRK1 Silent p.T479T 0.06 TCGA-KC-A4BL-01 1 220213574 220213574 G A EPRS Silent p.V28V 0.05 TCGA-KC-A4BL-01 1 22828886 22828886 G T ZBTB40 Missense_Mutation p.E373D 0.04 deleterious(0.01) benign(0.217) TCGA-KC-A4BL-01 1 27105656 27105656 C G ARID1A Missense_Mutation p.P1756R 0.07 benign(0.001) TCGA-KC-A4BL-01 20 45927599 45927599 G C ZMYND8 Missense_Mutation p.F109L 0.04 deleterious(0.04) possibly_damaging(0.908) TCGA-KC-A4BL-01 2 179584977 179584977 C T TTN Missense_Mutation p.V7798M 0.05 TCGA-KC-A4BL-01 2 185803872 185803872 G A ZNF804A 3'UTR 0.08 TCGA-KC-A4BL-01 2 232320221 232320221 A G NCL Silent p.G649G 0.08 TCGA-KC-A4BL-01 3 51752144 51752144 G A GRM2 3'UTR 0.05 TCGA-KC-A4BL-01 4 154709577 154709577 G A SFRP2 Silent p.P137P 0.04 TCGA-KC-A4BL-01 5 118837734 118837734 A G HSD17B4 Splice_Site p.X429_splice 0.05 TCGA-KC-A4BL-01 5 149602668 149602668 G A CAMK2A Silent p.D450D 0.05 TCGA-KC-A4BL-01 6 143828561 143828561 C T FUCA2 Nonsense_Mutation p.W75* 0.06 TCGA-KC-A4BL-01 8 37603047 37603047 A G ERLIN2 Intron 0.12 TCGA-KC-A4BN-01 10 26465766 26465766 G T MYO3A Missense_Mutation p.C1477F 0.06 tolerated_low_confidence(0.27) benign(0.002) TCGA-KC-A4BN-01 11 34991708 34991708 C T PDHX Missense_Mutation p.A280V 0.21 tolerated(0.39) possibly_damaging(0.472) TCGA-KC-A4BN-01 12 32481467 32481467 C T BICD1 Missense_Mutation p.A693V 0.15 deleterious(0.05) possibly_damaging(0.658) TCGA-KC-A4BN-01 14 20216043 20216043 G A OR4Q3 Missense_Mutation p.G153S 0.20 deleterious(0.02) probably_damaging(0.921) TCGA-KC-A4BN-01 15 40750961 40750961 C T BAHD1 Missense_Mutation p.P100S 0.10 tolerated(0.4) probably_damaging(0.993) TCGA-KC-A4BN-01 15 42503790 42503790 G A TMEM87A 3'UTR 0.23 TCGA-KC-A4BN-01 15 45777429 45777429 T C SLC30A4 Missense_Mutation p.I408V 0.08 tolerated(0.55) benign(0.005) TCGA-KC-A4BN-01 16 30002225 30002225 G A TAOK2 3'Flank 0.07 TCGA-KC-A4BN-01 16 84695401 84695401 A G KLHL36 Missense_Mutation p.I505V 0.07 tolerated(0.84) benign(0.001) TCGA-KC-A4BN-01 19 18119525 18119525 G A ARRDC2 Missense_Mutation p.G94R 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-KC-A4BN-01 19 21239844 21239844 T C ZNF430 Missense_Mutation p.W244R 0.20 tolerated(0.34) benign(0.012) TCGA-KC-A4BN-01 1 110146052 110146052 T A GNAT2 Missense_Mutation p.Q330L 0.06 tolerated(0.07) benign(0.239) TCGA-KC-A4BN-01 1 158984677 158984677 C T IFI16 Silent p.F69F 0.20 TCGA-KC-A4BN-01 1 185259961 185259961 T C SWT1 3'UTR 0.23 TCGA-KC-A4BN-01 1 72241872 72241872 C T NEGR1 Missense_Mutation p.R173Q 0.07 deleterious(0) probably_damaging(0.978) TCGA-KC-A4BN-01 20 13695683 13695683 T C ESF1 Silent p.E798E 0.21 TCGA-KC-A4BN-01 20 23614520 23614520 G A CST3 Intron 0.16 TCGA-KC-A4BN-01 2 27804618 27804618 C A C2orf16 Missense_Mutation p.R1727S 0.03 tolerated(0.53) benign(0.277) TCGA-KC-A4BN-01 5 82833276 82833276 C T VCAN Missense_Mutation p.T1485I 0.05 tolerated(0.36) benign(0.012) TCGA-KC-A4BN-01 6 161027631 161027631 G A LPA Missense_Mutation p.T888M 0.20 deleterious(0) probably_damaging(0.998) TCGA-KC-A4BN-01 6 24848254 24848254 A C FAM65B Missense_Mutation p.F359C 0.29 deleterious(0) probably_damaging(0.967) TCGA-KC-A4BN-01 8 104934014 104934014 T A RIMS2 Splice_Site p.X732_splice 0.12 TCGA-KC-A4BN-01 X 128599589 128599589 C G SMARCA1 Missense_Mutation p.D980H 0.41 deleterious(0.04) probably_damaging(0.953) TCGA-KC-A4BN-01 X 69478626 69478626 A C P2RY4 Missense_Mutation p.I283M 0.15 deleterious(0.04) benign(0.071) TCGA-KC-A4BO-01 17 73559193 73559193 C A LLGL2 Missense_Mutation p.S209R 0.08 deleterious(0) possibly_damaging(0.774) TCGA-KC-A4BO-01 22 50898528 50898528 C T SBF1 Missense_Mutation p.R1115H 0.08 deleterious(0.01) possibly_damaging(0.817) TCGA-KC-A4BR-01 11 100933406 100933406 C T PGR Missense_Mutation p.V662I 0.07 tolerated(0.84) benign(0.001) TCGA-KC-A4BR-01 11 123886818 123886818 C T OR10G4 Silent p.D179D 0.06 TCGA-KC-A4BR-01 18 61328408 61328408 G T SERPINB3 Missense_Mutation p.L15M 0.05 tolerated(0.07) possibly_damaging(0.722) TCGA-KC-A4BR-01 1 16727315 16727315 C A SPATA21 Silent p.R358R 0.04 TCGA-KC-A4BR-01 1 19166742 19166742 G A TAS1R2 Missense_Mutation p.P624L 0.08 tolerated(0.3) benign(0.009) TCGA-KC-A4BR-01 20 2820542 2820542 G A PCED1A Missense_Mutation p.S6L 0.10 deleterious_low_confidence(0.02) benign(0.019) TCGA-KC-A4BR-01 2 141092024 141092024 G T LRP1B Missense_Mutation p.T4074K 0.07 possibly_damaging(0.728) TCGA-KC-A4BR-01 6 26216864 26216864 T A HIST1H2BG Missense_Mutation p.E3V 0.09 deleterious_low_confidence(0) unknown(0) TCGA-KC-A4BR-01 7 50514797 50514797 T - FIGNL1 Frame_Shift_Del p.E64Rfs*16 0.10 TCGA-KC-A4BV-01 10 115917401 115917401 A G C10orf118 Missense_Mutation p.V224A 0.33 deleterious(0.01) benign(0.037) TCGA-KC-A4BV-01 10 58118485 58118485 C A ZWINT Missense_Mutation p.R208S 0.33 deleterious(0.02) benign(0.025) TCGA-KC-A4BV-01 10 89711886 89711887 - C PTEN Frame_Shift_Ins p.S170Qfs*10 0.29 TCGA-KC-A4BV-01 10 91066539 91066539 T A IFIT2 Missense_Mutation p.Y276N 0.18 tolerated(0.3) benign(0.173) TCGA-KC-A4BV-01 11 111948994 111948994 A G C11orf57 Missense_Mutation p.D42G 0.28 deleterious(0.02) probably_damaging(0.987) TCGA-KC-A4BV-01 11 57003544 57003544 A - APLNR Frame_Shift_Del p.F312Sfs*129 0.13 TCGA-KC-A4BV-01 12 121476763 121476764 - A OASL Frame_Shift_Ins p.M4Ifs*6 0.20 TCGA-KC-A4BV-01 12 41463923 41463923 G A CNTN1 3'UTR 0.56 TCGA-KC-A4BV-01 13 111293881 111293887 TCCTCAG - CARS2 Missense_Mutation 0.21 TCGA-KC-A4BV-01 14 53173992 53173992 C T PSMC6 Missense_Mutation p.H33Y 0.35 tolerated(0.17) benign(0.02) TCGA-KC-A4BV-01 15 42439840 42439840 C T PLA2G4F Missense_Mutation p.V394I 0.04 tolerated(0.38) benign(0.371) TCGA-KC-A4BV-01 15 45433155 45433155 G A DUOX1 Silent p.G484G 0.40 TCGA-KC-A4BV-01 15 72244228 72244228 T C MYO9A Missense_Mutation p.D731G 0.34 tolerated(0.15) possibly_damaging(0.81) TCGA-KC-A4BV-01 16 30389808 30389808 G A SEPT1 Nonsense_Mutation p.Q356* 0.09 TCGA-KC-A4BV-01 16 3778981 3778981 G C CREBBP Missense_Mutation p.Q2023E 0.50 unknown(0) TCGA-KC-A4BV-01 16 49670078 49670078 C A ZNF423 Missense_Mutation p.M995I 0.17 tolerated(0.08) benign(0.008) TCGA-KC-A4BV-01 16 70162938 70162938 C A PDPR Missense_Mutation p.L174M 0.13 deleterious(0) probably_damaging(0.983) TCGA-KC-A4BV-01 17 73836336 73836336 G A UNC13D Silent p.C276C 0.23 TCGA-KC-A4BV-01 18 14478680 14478680 C G CXADRP3 RNA 0.47 TCGA-KC-A4BV-01 19 43372351 43372351 C T PSG1 Missense_Mutation p.R382H 0.38 tolerated(0.58) benign(0.006) TCGA-KC-A4BV-01 1 109377557 109377557 G A AKNAD1 Missense_Mutation p.P553L 0.21 tolerated(0.18) benign(0) TCGA-KC-A4BV-01 1 156011291 156011292 - A UBQLN4 Frame_Shift_Ins p.S547Kfs*29 0.22 TCGA-KC-A4BV-01 1 180885841 180885841 C T KIAA1614 Missense_Mutation p.P201L 0.05 tolerated(1) benign(0.004) TCGA-KC-A4BV-01 1 212985626 212985626 A G TATDN3 Missense_Mutation p.I220V 0.33 tolerated(0.13) benign(0.01) TCGA-KC-A4BV-01 1 60456420 60456420 G C C1orf87 Missense_Mutation p.D522E 0.24 tolerated(0.07) possibly_damaging(0.84) TCGA-KC-A4BV-01 20 4155731 4155731 G T SMOX Missense_Mutation p.S10I 0.21 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-KC-A4BV-01 20 62904819 62904819 C T PCMTD2 Missense_Mutation p.R318W 0.37 deleterious(0.01) benign(0.394) TCGA-KC-A4BV-01 22 16449624 16449624 C T OR11H1 Missense_Mutation p.A61T 0.16 deleterious(0.01) benign(0.007) TCGA-KC-A4BV-01 2 67632038 67632038 A C ETAA1 Missense_Mutation p.I742L 0.11 tolerated(0.34) benign(0.007) TCGA-KC-A4BV-01 3 136221497 136221497 C G STAG1 Missense_Mutation p.L267F 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-KC-A4BV-01 3 38647629 38647629 G T SCN5A Missense_Mutation p.S384Y 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-KC-A4BV-01 5 140432441 140432441 A C PCDHB1 Silent p.R462R 0.34 TCGA-KC-A4BV-01 5 90052835 90052835 C T GPR98 Missense_Mutation p.P3933S 0.14 probably_damaging(0.992) TCGA-KC-A4BV-01 6 79713461 79713461 T C PHIP Missense_Mutation p.S547G 0.35 tolerated(0.07) possibly_damaging(0.878) TCGA-KC-A4BV-01 7 123594258 123594258 C A SPAM1 Missense_Mutation p.P212T 0.13 deleterious(0) probably_damaging(0.997) TCGA-KC-A4BV-01 7 83016314 83016314 C G SEMA3E Missense_Mutation p.G574R 0.44 deleterious(0.02) probably_damaging(1) TCGA-KC-A4BV-01 8 55542611 55542611 C G RP1 Missense_Mutation p.Q2057E 0.22 tolerated(0.29) benign(0.114) TCGA-KC-A4BV-01 X 16142274 16142274 T C GRPR Silent p.C66C 0.16 TCGA-KC-A4BV-01 X 70462164 70462164 A C ZMYM3 Missense_Mutation p.F1220V 0.65 deleterious(0) probably_damaging(0.992) TCGA-KC-A4BV-01 X 86919798 86919798 G C KLHL4 Missense_Mutation p.A654P 0.58 deleterious(0.01) possibly_damaging(0.907) TCGA-KC-A7F3-01 10 14563937 14563938 - G FAM107B Frame_Shift_Ins p.E245Dfs*10 0.20 TCGA-KC-A7F3-01 11 69588217 69588217 G T FGF4 Missense_Mutation p.L161I 0.05 tolerated(0.08) possibly_damaging(0.45) TCGA-KC-A7F3-01 11 7060028 7060028 G A NLRP14 Missense_Mutation p.A71T 0.14 deleterious(0.04) possibly_damaging(0.453) TCGA-KC-A7F3-01 11 94113908 94113908 C A GPR83 Missense_Mutation p.D227Y 0.25 tolerated(0.06) benign(0.285) TCGA-KC-A7F3-01 14 35564292 35564292 G C PPP2R3C Missense_Mutation p.R313G 0.15 deleterious(0) probably_damaging(0.995) TCGA-KC-A7F3-01 14 61503802 61503802 C T SLC38A6 Silent p.L170L 0.08 TCGA-KC-A7F3-01 14 76349085 76349085 G A TTLL5 Missense_Mutation p.A1194T 0.22 tolerated_low_confidence(0.1) benign(0.003) TCGA-KC-A7F3-01 14 90770672 90770672 T C NRDE2 Missense_Mutation p.I204M 0.18 deleterious(0) possibly_damaging(0.614) TCGA-KC-A7F3-01 15 75970221 75970221 C T CSPG4 Missense_Mutation p.A1653T 0.20 deleterious(0.03) benign(0.165) TCGA-KC-A7F3-01 17 46620347 46620347 C T HOXB2 3'UTR 0.07 TCGA-KC-A7F3-01 17 66440641 66440641 G A WIPI1 Silent p.N141N 0.26 TCGA-KC-A7F3-01 17 67210954 67210959 AAAAAT - ABCA10 In_Frame_Del p.I298_F299del 0.20 TCGA-KC-A7F3-01 17 71232290 71232290 G T C17orf80 Silent p.V223V 0.15 TCGA-KC-A7F3-01 17 71232291 71232291 C T C17orf80 Missense_Mutation p.P224S 0.15 tolerated(0.07) probably_damaging(0.991) TCGA-KC-A7F3-01 19 43234084 43234084 C A PSG3 Missense_Mutation p.Q278H 0.13 tolerated(0.07) benign(0.031) TCGA-KC-A7F3-01 19 56515211 56515211 G C NLRP5 Silent p.G64G 0.18 TCGA-KC-A7F3-01 19 5711843 5711843 A C LONP1 Missense_Mutation p.V270G 0.09 deleterious(0) possibly_damaging(0.908) TCGA-KC-A7F3-01 19 9325026 9325026 A C OR7D4 Missense_Mutation p.M163R 0.27 deleterious(0) possibly_damaging(0.756) TCGA-KC-A7F3-01 1 23637361 23637361 G C HNRNPR Silent p.G499G 0.29 TCGA-KC-A7F3-01 2 145157536 145157536 T C ZEB2 Silent p.T406T 0.05 TCGA-KC-A7F3-01 2 164466569 164466569 G C FIGN Silent p.L591L 0.10 TCGA-KC-A7F3-01 2 183847593 183847593 A G NCKAP1 Silent p.H394H 0.18 TCGA-KC-A7F3-01 3 23960791 23960791 C T RPL15 Silent p.F138F 0.17 TCGA-KC-A7F3-01 3 38163242 38163242 G A DLEC1 Missense_Mutation p.G1664R 0.13 tolerated(0.1) benign(0.073) TCGA-KC-A7F3-01 3 9780727 9780727 A G BRPF1 Missense_Mutation p.Y215C 0.15 deleterious(0) probably_damaging(0.998) TCGA-KC-A7F3-01 4 151773137 151773137 G A LRBA Missense_Mutation p.A1242V 0.07 tolerated_low_confidence(0.09) benign(0.007) TCGA-KC-A7F3-01 4 175225405 175225405 C T CEP44 Missense_Mutation p.S131L 0.14 tolerated(0.2) benign(0.027) TCGA-KC-A7F3-01 5 33951536 33951536 G A SLC45A2 Intron 0.33 TCGA-KC-A7F3-01 6 132891765 132891765 G A TAAR6 Missense_Mutation p.R102K 0.20 tolerated(0.05) benign(0.005) TCGA-KC-A7F3-01 6 139487664 139487664 C T HECA Missense_Mutation p.A172V 0.23 tolerated(0.11) probably_damaging(0.994) TCGA-KC-A7F3-01 6 168352505 168352505 C T MLLT4 Nonsense_Mutation p.Q1484* 0.14 TCGA-KC-A7F3-01 7 127253123 127253123 G C PAX4 Missense_Mutation p.A215G 0.27 deleterious(0) possibly_damaging(0.742) TCGA-KC-A7F3-01 7 30818114 30818114 A G FAM188B Missense_Mutation p.R44G 0.21 deleterious(0) probably_damaging(0.996) TCGA-KC-A7F3-01 7 4874799 4874799 G A RADIL Silent p.S285S 0.20 TCGA-KC-A7F3-01 8 145649503 145649503 G A VPS28 Silent p.L157L 0.05 TCGA-KC-A7F3-01 9 84606322 84606322 C G SPATA31D1 Missense_Mutation p.Q313E 0.32 deleterious(0.04) benign(0.331) TCGA-KC-A7F3-01 X 100881223 100881223 T C ARMCX3 3'UTR 0.40 TCGA-KC-A7F5-01 10 26822387 26822387 G T APBB1IP Missense_Mutation p.R278I 0.42 deleterious(0) benign(0.115) TCGA-KC-A7F5-01 11 5010966 5010966 G A MMP26 Missense_Mutation p.R63Q 0.54 tolerated(0.07) benign(0) TCGA-KC-A7F5-01 11 55587793 55587793 C T OR5D18 Missense_Mutation p.R230C 0.46 deleterious(0.04) benign(0.032) TCGA-KC-A7F5-01 11 72293527 72293527 G A PDE2A Silent p.T604T 0.41 TCGA-KC-A7F5-01 11 94277395 94277395 G T FUT4 Silent p.S32S 0.44 TCGA-KC-A7F5-01 12 20864418 20864418 A G SLCO1C1 Missense_Mutation p.E168G 0.55 tolerated(0.11) benign(0.013) TCGA-KC-A7F5-01 12 46230731 46230731 T C ARID2 Missense_Mutation p.L327S 0.34 deleterious(0) probably_damaging(0.998) TCGA-KC-A7F5-01 12 57590912 57590912 C T LRP1 Missense_Mutation p.R3014C 0.48 possibly_damaging(0.614) TCGA-KC-A7F5-01 12 66597520 66597520 G C IRAK3 Missense_Mutation p.V55L 0.40 tolerated(0.37) probably_damaging(0.942) TCGA-KC-A7F5-01 14 38061223 38061228 TCTCGA - FOXA1 In_Frame_Del p.F254_N256delinsY 0.50 TCGA-KC-A7F5-01 15 49048337 49048337 T G CEP152 Missense_Mutation p.Q1036H 0.45 deleterious(0.02) probably_damaging(0.957) TCGA-KC-A7F5-01 17 16042456 16042456 C - NCOR1 Frame_Shift_Del p.M406Ifs*15 0.23 TCGA-KC-A7F5-01 17 47696644 47696644 A C SPOP Missense_Mutation p.F102V 0.38 tolerated(0.11) probably_damaging(1) TCGA-KC-A7F5-01 17 76499101 76499101 C T DNAH17 Intron 0.48 TCGA-KC-A7F5-01 18 31323309 31323309 G A ASXL3 Missense_Mutation p.R1166K 0.41 benign(0.115) TCGA-KC-A7F5-01 19 1089510 1089510 T C POLR2E Missense_Mutation p.Y203C 0.36 deleterious(0) probably_damaging(1) TCGA-KC-A7F5-01 19 42753613 42753614 - T ERF Frame_Shift_Ins p.F217Lfs*12 0.40 TCGA-KC-A7F5-01 1 144881611 144881611 C T PDE4DIP Silent p.Q1195Q 0.18 TCGA-KC-A7F5-01 1 150974945 150974945 C T FAM63A Missense_Mutation p.R98Q 0.48 tolerated_low_confidence(0.92) benign(0.001) TCGA-KC-A7F5-01 1 155448900 155448900 C A ASH1L Missense_Mutation p.R1254L 0.39 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-KC-A7F5-01 1 176564577 176564577 C T PAPPA2 Missense_Mutation p.R613C 0.47 deleterious(0) probably_damaging(0.998) TCGA-KC-A7F5-01 21 10951330 10951330 A C TPTE Missense_Mutation p.S128A 0.24 tolerated(0.63) benign(0.034) TCGA-KC-A7F5-01 21 46000248 46000248 T A KRTAP10-5 Missense_Mutation p.T70S 0.53 tolerated(0.09) unknown(0) TCGA-KC-A7F5-01 22 39627771 39627771 G A PDGFB Silent p.F104F 0.60 TCGA-KC-A7F5-01 2 168099892 168099892 G A XIRP2 Missense_Mutation p.D664N 0.42 probably_damaging(0.988) TCGA-KC-A7F5-01 2 207988820 207988820 C T KLF7 Silent p.T137T 0.35 TCGA-KC-A7F5-01 2 219232553 219232553 G C C2orf62 Missense_Mutation p.V344L 0.23 tolerated(0.16) benign(0.319) TCGA-KC-A7F5-01 2 65561891 65561891 T C SPRED2 Missense_Mutation p.Y74C 0.54 tolerated(0.09) possibly_damaging(0.883) TCGA-KC-A7F5-01 3 111564682 111564682 C A PLCXD2 3'UTR 0.41 TCGA-KC-A7F5-01 4 159592815 159592815 C A C4orf46 Missense_Mutation p.G47C 0.11 tolerated_low_confidence(0.08) possibly_damaging(0.586) TCGA-KC-A7F5-01 4 186380216 186380216 T A CCDC110 Nonsense_Mutation p.K509* 0.39 TCGA-KC-A7F5-01 5 71752404 71752404 A T ZNF366 Missense_Mutation p.C451S 0.31 deleterious(0.01) benign(0.026) TCGA-KC-A7F5-01 6 155761204 155761204 A - NOX3 Frame_Shift_Del p.V185Afs*2 0.26 TCGA-KC-A7F5-01 8 100026096 100026096 A G VPS13B Missense_Mutation p.Q27R 0.57 deleterious(0) benign(0.227) TCGA-KC-A7F5-01 8 70981644 70981644 G A PRDM14 Missense_Mutation p.P151L 0.58 tolerated(0.43) benign(0.006) TCGA-KC-A7F5-01 X 120007806 120007806 C A CT47B1 Nonsense_Mutation p.E282* 0.90 TCGA-KC-A7F6-01 10 87362425 87362425 G T GRID1 Missense_Mutation p.R879S 0.12 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-KC-A7F6-01 11 123886347 123886347 C T OR10G4 Silent p.D22D 0.37 TCGA-KC-A7F6-01 11 125647896 125647896 C T PATE2 Silent p.A26A 0.35 TCGA-KC-A7F6-01 11 233049 233049 G A SIRT3 Missense_Mutation p.R214W 0.25 deleterious(0) probably_damaging(0.992) TCGA-KC-A7F6-01 11 88911368 88911368 G A TYR Missense_Mutation p.V83I 0.08 tolerated(0.41) benign(0.022) TCGA-KC-A7F6-01 12 4735742 4735742 C T AKAP3 Missense_Mutation p.V776I 0.29 tolerated(0.09) probably_damaging(0.999) TCGA-KC-A7F6-01 17 18025424 18025424 G T MYO15A Missense_Mutation p.G1104C 0.16 unknown(0) TCGA-KC-A7F6-01 17 18082059 18082059 G A MYO15A Intron 0.25 TCGA-KC-A7F6-01 17 40849769 40849769 C T CNTNAP1 Missense_Mutation p.L1256F 0.04 tolerated(0.09) benign(0.189) TCGA-KC-A7F6-01 17 41924577 41924577 C T CD300LG 5'UTR 0.08 TCGA-KC-A7F6-01 17 7579402 7579418 AGATGACAGGGGCCAGG - TP53 Frame_Shift_Del p.S90Ffs*53 0.57 TCGA-KC-A7F6-01 19 44933129 44933129 G A ZNF229 Silent p.F609F 0.16 TCGA-KC-A7F6-01 19 9085096 9085096 G T MUC16 Missense_Mutation p.P2240H 0.35 unknown(0) TCGA-KC-A7F6-01 19 9086805 9086805 A G MUC16 Silent p.S1670S 0.06 TCGA-KC-A7F6-01 1 151111116 151111116 C T SEMA6C Missense_Mutation p.R149H 0.09 deleterious(0) possibly_damaging(0.743) TCGA-KC-A7F6-01 1 152552009 152552009 C T LCE3D 3'UTR 0.37 TCGA-KC-A7F6-01 1 20517106 20517106 G A UBXN10 Missense_Mutation p.V18I 0.18 tolerated(0.27) benign(0.002) TCGA-KC-A7F6-01 1 36563588 36563588 C T COL8A2 Missense_Mutation p.G565E 0.30 tolerated(0.24) probably_damaging(0.994) TCGA-KC-A7F6-01 20 14306920 14306920 A G FLRT3 Silent p.I411I 0.26 TCGA-KC-A7F6-01 3 122283293 122283293 C T DTX3L Missense_Mutation p.P7L 0.20 deleterious(0) possibly_damaging(0.9) TCGA-KC-A7F6-01 5 118867003 118867003 C T HSD17B4 Missense_Mutation p.R658C 0.32 deleterious(0.01) probably_damaging(0.921) TCGA-KC-A7F6-01 5 122718571 122718571 C G CEP120 Missense_Mutation p.V625L 0.39 tolerated(0.32) benign(0.001) TCGA-KC-A7F6-01 5 178585819 178585819 G A ADAMTS2 Missense_Mutation p.A346V 0.10 deleterious(0) probably_damaging(0.995) TCGA-KC-A7F6-01 5 31526773 31526773 C T DROSHA Silent p.A89A 0.09 TCGA-KC-A7F6-01 5 86707138 86707138 A G CCNH Missense_Mutation p.L48P 0.12 deleterious(0) possibly_damaging(0.772) TCGA-KC-A7F6-01 6 30308085 30308085 G A TRIM39 Silent p.T280T 0.24 TCGA-KC-A7F6-01 6 76576719 76576719 A T MYO6 Missense_Mutation p.D614V 0.29 tolerated(0.11) unknown(0) TCGA-KC-A7F6-01 8 113267504 113267504 C A CSMD3 Missense_Mutation p.G3339C 0.27 deleterious(0) benign(0.179) TCGA-KC-A7F6-01 Y 4968185 4968185 G T PCDH11Y Missense_Mutation p.V856F 0.74 deleterious(0) probably_damaging(0.989) TCGA-KC-A7FA-01 10 134016313 134016313 T G DPYSL4 Missense_Mutation p.I482S 0.33 deleterious(0) probably_damaging(0.991) TCGA-KC-A7FA-01 10 13489309 13489309 C T BEND7 Silent p.A346A 0.32 TCGA-KC-A7FA-01 10 22657474 22657474 T G SPAG6 Missense_Mutation p.H113Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-KC-A7FA-01 10 64968481 64968481 C G JMJD1C Missense_Mutation p.R983T 0.41 deleterious(0) possibly_damaging(0.821) TCGA-KC-A7FA-01 10 74916082 74916082 T G ECD Missense_Mutation p.I181L 0.12 tolerated(0.2) benign(0.099) TCGA-KC-A7FA-01 11 118037790 118037790 G A SCN2B Missense_Mutation p.R154W 0.28 deleterious(0.01) possibly_damaging(0.891) TCGA-KC-A7FA-01 12 49431090 49431105 ACCATAGCCATGGATG - KMT2D Frame_Shift_Del p.P3345Rfs*8 0.38 TCGA-KC-A7FA-01 13 39264479 39264479 C T FREM2 Missense_Mutation p.P1000S 0.04 tolerated(0.17) benign(0.01) TCGA-KC-A7FA-01 14 22592021 22592021 A G TRAV26-1 Missense_Mutation p.N36D 0.18 deleterious(0.01) possibly_damaging(0.617) TCGA-KC-A7FA-01 14 51383369 51383369 G C PYGL Silent p.P361P 0.26 TCGA-KC-A7FA-01 15 100331760 100331760 G A AC090825.1 5'Flank 0.38 TCGA-KC-A7FA-01 15 37388558 37388558 C G MEIS2 Missense_Mutation p.G107R 0.19 deleterious(0.05) possibly_damaging(0.515) TCGA-KC-A7FA-01 17 7576851 7576851 A C TP53 Splice_Site p.X331_splice 0.48 TCGA-KC-A7FA-01 19 16962337 16962337 C T SIN3B Missense_Mutation p.P281S 0.28 tolerated(0.1) benign(0.022) TCGA-KC-A7FA-01 19 4433394 4433394 C T CHAF1A Missense_Mutation p.S844L 0.38 tolerated(0.31) benign(0.09) TCGA-KC-A7FA-01 1 1021259 1021259 T G C1orf159 Missense_Mutation p.K148N 0.15 deleterious(0.04) benign(0.328) TCGA-KC-A7FA-01 1 158669502 158669503 - A OR6K2 Frame_Shift_Ins p.S314Ffs*9 0.25 TCGA-KC-A7FA-01 1 160771695 160771695 G A LY9 Intron 0.10 TCGA-KC-A7FA-01 1 206610382 206610382 C G SRGAP2 Silent p.A455A 0.06 TCGA-KC-A7FA-01 1 207758094 207758094 C A CR1 Missense_Mutation p.D1801E 0.40 tolerated(0.18) possibly_damaging(0.46) TCGA-KC-A7FA-01 1 237787069 237787069 A G RYR2 Missense_Mutation p.N1974S 0.46 benign(0.207) TCGA-KC-A7FA-01 1 27675577 27675577 G C SYTL1 Missense_Mutation p.D156H 0.37 deleterious(0.01) possibly_damaging(0.472) TCGA-KC-A7FA-01 1 53072580 53072580 C T GPX7 Silent p.T121T 0.07 TCGA-KC-A7FA-01 20 23016216 23016216 G A SSTR4 Silent p.A32A 0.11 TCGA-KC-A7FA-01 22 45133146 45133146 G A PRR5 3'UTR 0.42 TCGA-KC-A7FA-01 2 130738003 130738003 A G RAB6C Silent p.T105T 0.04 TCGA-KC-A7FA-01 2 161030498 161030498 G A ITGB6 Missense_Mutation p.A249V 0.12 tolerated(0.12) probably_damaging(0.999) TCGA-KC-A7FA-01 2 211476889 211476889 C T CPS1 Missense_Mutation p.R820W 0.08 deleterious(0) probably_damaging(1) TCGA-KC-A7FA-01 2 26609300 26609300 G A EPT1 Missense_Mutation p.V331I 0.33 tolerated(0.18) benign(0.014) TCGA-KC-A7FA-01 2 99766976 99766977 - A C2ORF15 Frame_Shift_Ins p.V22Gfs*19 0.08 TCGA-KC-A7FA-01 3 185146622 185146622 C T MAP3K13 Missense_Mutation p.L85F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-KC-A7FA-01 3 64526848 64526848 C A ADAMTS9 Missense_Mutation p.C1815F 0.42 tolerated(0.05) probably_damaging(1) TCGA-KC-A7FA-01 3 66502033 66502033 T C LRIG1 Silent p.T105T 0.45 TCGA-KC-A7FA-01 4 154709764 154709764 T C SFRP2 Missense_Mutation p.Q75R 0.20 deleterious(0.02) possibly_damaging(0.596) TCGA-KC-A7FA-01 4 164272621 164272621 C T NPY5R Missense_Mutation p.S399L 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-KC-A7FA-01 5 140431178 140431178 C T PCDHB1 Silent p.S41S 0.23 TCGA-KC-A7FA-01 5 156381616 156381616 G A TIMD4 Silent p.R70R 0.29 TCGA-KC-A7FA-01 5 54786858 54786858 T C PPAP2A Missense_Mutation p.Y48C 0.07 deleterious(0) probably_damaging(0.975) TCGA-KC-A7FA-01 6 159420666 159420667 - T RSPH3 Frame_Shift_Ins p.H115Tfs*35 0.27 TCGA-KC-A7FA-01 6 30951918 30951918 G A MUC21 Intron 0.44 TCGA-KC-A7FA-01 6 36261976 36261976 G A PNPLA1 Missense_Mutation p.D172N 0.40 deleterious(0) probably_damaging(0.998) TCGA-KC-A7FA-01 6 76022274 76022274 C A FILIP1 Missense_Mutation p.V1092F 0.27 tolerated(0.13) possibly_damaging(0.87) TCGA-KC-A7FA-01 7 70228266 70228266 C T AUTS2 Nonsense_Mutation p.Q385* 0.34 TCGA-KC-A7FA-01 8 105509980 105509980 T G LRP12 Missense_Mutation p.Y267S 0.33 tolerated(0.05) probably_damaging(0.989) TCGA-KC-A7FA-01 8 139151265 139151265 G A FAM135B Missense_Mutation p.R1289C 0.35 deleterious(0) probably_damaging(0.999) TCGA-KC-A7FA-01 8 23301996 23301996 G T ENTPD4 Missense_Mutation p.T179K 0.51 deleterious(0) probably_damaging(1) TCGA-KC-A7FA-01 9 106882359 106882359 A G SMC2 Missense_Mutation p.D683G 0.06 tolerated(0.11) benign(0) TCGA-KC-A7FA-01 9 72131766 72131766 G A APBA1 Nonsense_Mutation p.Q121* 0.48 TCGA-KC-A7FA-01 9 96860386 96860386 C G PTPDC1 Nonsense_Mutation p.S511* 0.18 TCGA-KC-A7FA-01 X 47099251 47099251 G A USP11 Silent p.R203R 0.06 TCGA-KC-A7FD-01 10 135215702 135215702 C T MTG1 Missense_Mutation p.A208V 0.39 tolerated(0.13) possibly_damaging(0.672) TCGA-KC-A7FD-01 10 26880327 26880327 T G LINC00264 RNA 0.35 TCGA-KC-A7FD-01 10 48370748 48370748 G A ZNF488 Silent p.A72A 0.10 TCGA-KC-A7FD-01 11 22380963 22380963 T A SLC17A6 Missense_Mutation p.F155I 0.32 deleterious(0) possibly_damaging(0.657) TCGA-KC-A7FD-01 11 7111257 7111257 C T RBMXL2 Silent p.Y302Y 0.16 TCGA-KC-A7FD-01 11 88911837 88911837 G A TYR Missense_Mutation p.R239Q 0.31 deleterious(0.04) probably_damaging(0.999) TCGA-KC-A7FD-01 12 53927005 53927005 G C ATF7 Missense_Mutation p.A200G 0.38 tolerated(0.21) benign(0.001) TCGA-KC-A7FD-01 12 92537884 92537884 T - BTG1 Frame_Shift_Del p.N163Tfs*4 0.28 TCGA-KC-A7FD-01 13 58299039 58299039 G A PCDH17 Missense_Mutation p.E1031K 0.04 tolerated_low_confidence(0.16) benign(0.028) TCGA-KC-A7FD-01 14 69341705 69341705 G A ACTN1 Silent p.R872R 0.07 TCGA-KC-A7FD-01 14 94097201 94097201 C - UNC79 Frame_Shift_Del p.P1712Lfs*3 0.21 TCGA-KC-A7FD-01 15 25465676 25465676 A G SNORD115-27 RNA 0.31 TCGA-KC-A7FD-01 15 82336870 82336870 G A MEX3B Missense_Mutation p.T114M 0.06 deleterious(0) probably_damaging(1) TCGA-KC-A7FD-01 16 67917283 67917283 T A EDC4 Intron 0.32 TCGA-KC-A7FD-01 16 72845538 72845538 G A ZFHX3 Nonsense_Mutation p.Q1268* 0.38 TCGA-KC-A7FD-01 17 10435046 10435046 G A MYH2 Silent p.D867D 0.36 TCGA-KC-A7FD-01 17 38020380 38020380 G T IKZF3 5'UTR 0.36 TCGA-KC-A7FD-01 17 63204085 63204085 C T RGS9 Silent p.L417L 0.05 TCGA-KC-A7FD-01 17 649822 649822 G A GEMIN4 Silent p.Y487Y 0.30 TCGA-KC-A7FD-01 19 16860227 16860227 C T NWD1 Silent p.H258H 0.15 TCGA-KC-A7FD-01 19 22156491 22156491 C A ZNF208 Nonsense_Mutation p.G449* 0.07 TCGA-KC-A7FD-01 19 9270907 9270907 C T ZNF317 Missense_Mutation p.R196C 0.41 tolerated(0.57) benign(0.003) TCGA-KC-A7FD-01 1 15386729 15386729 C T KAZN Silent p.A326A 0.07 TCGA-KC-A7FD-01 1 155931510 155931510 C G ARHGEF2 Missense_Mutation p.R470S 0.41 deleterious(0.03) probably_damaging(0.996) TCGA-KC-A7FD-01 1 158390007 158390007 G T OR10K2 Missense_Mutation p.S217Y 0.38 deleterious(0) probably_damaging(1) TCGA-KC-A7FD-01 1 158639228 158639228 C G SPTA1 Missense_Mutation p.K601N 0.36 deleterious(0) probably_damaging(1) TCGA-KC-A7FD-01 1 181680167 181680167 G A CACNA1E Missense_Mutation p.R378H 0.07 deleterious(0.03) possibly_damaging(0.522) TCGA-KC-A7FD-01 1 248756250 248756250 A G OR2T10 Missense_Mutation p.S274P 0.31 deleterious(0) benign(0.007) TCGA-KC-A7FD-01 1 29587401 29587401 G A PTPRU Missense_Mutation p.R377H 0.47 deleterious(0.01) benign(0.007) TCGA-KC-A7FD-01 1 89518908 89518908 C T GBP1 3'UTR 0.33 TCGA-KC-A7FD-01 1 89518909 89518909 A G GBP1 3'UTR 0.33 TCGA-KC-A7FD-01 20 62551466 62551466 C T DNAJC5 Intron 0.33 TCGA-KC-A7FD-01 2 179418502 179418502 C T TTN Missense_Mutation p.A29744T 0.32 TCGA-KC-A7FD-01 3 130452642 130452642 T C PIK3R4 Silent p.E400E 0.08 TCGA-KC-A7FD-01 3 17051267 17051267 G C PLCL2 Missense_Mutation p.M17I 0.40 deleterious(0) probably_damaging(0.979) TCGA-KC-A7FD-01 3 196089432 196089432 C A UBXN7 Nonsense_Mutation p.E321* 0.38 TCGA-KC-A7FD-01 3 44763241 44763241 C T ZNF502 Missense_Mutation p.T311M 0.08 tolerated(0.11) benign(0.066) TCGA-KC-A7FD-01 3 47364056 47364056 A G KLHL18 Splice_Site p.X87_splice 0.47 TCGA-KC-A7FD-01 3 4776852 4776852 A G ITPR1 Silent p.G1771G 0.07 TCGA-KC-A7FD-01 3 48623584 48623584 C T COL7A1 Missense_Mutation p.V1216M 0.30 unknown(0) TCGA-KC-A7FD-01 4 146601567 146601567 A T C4orf51 Missense_Mutation p.Q71L 0.15 tolerated(0.13) benign(0.122) TCGA-KC-A7FD-01 4 177032828 177032828 G A WDR17 Missense_Mutation p.A57T 0.35 deleterious(0) probably_damaging(0.996) TCGA-KC-A7FD-01 4 178352895 178352895 A T AGA Missense_Mutation p.N336K 0.05 tolerated(0.42) benign(0.012) TCGA-KC-A7FD-01 4 94344041 94344041 C T GRID2 Silent p.Y489Y 0.35 TCGA-KC-A7FD-01 5 90078963 90078963 C G GPR98 Missense_Mutation p.I4418M 0.35 benign(0.074) TCGA-KC-A7FD-01 6 116442816 116442816 G A COL10A1 Missense_Mutation p.P155S 0.50 tolerated(0.82) unknown(0) TCGA-KC-A7FD-01 7 151921662 151921662 C G KMT2C Missense_Mutation p.E1006Q 0.30 probably_damaging(0.995) TCGA-KC-A7FD-01 8 125498222 125498222 C A RNF139 Missense_Mutation p.T111K 0.06 tolerated(0.89) benign(0.03) TCGA-KC-A7FD-01 8 21842352 21842352 T A XPO7 Splice_Site p.X491_splice 0.44 TCGA-KC-A7FD-01 9 111617958 111617958 C T ACTL7B Missense_Mutation p.E85K 0.40 tolerated(0.35) benign(0.137) TCGA-KC-A7FD-01 9 124921988 124921988 C A NDUFA8 5'UTR 0.30 TCGA-KC-A7FD-01 9 33313652 33313652 G T NFX1 Missense_Mutation p.R483S 0.36 tolerated(1) benign(0.001) TCGA-KC-A7FD-01 9 33313653 33313653 C T NFX1 Missense_Mutation p.H484Y 0.36 deleterious(0.05) benign(0.141) TCGA-KC-A7FD-01 9 35062992 35062992 A G VCP Missense_Mutation p.F265S 0.33 deleterious(0.04) probably_damaging(0.928) TCGA-KC-A7FD-01 9 35062993 35062993 A C VCP Missense_Mutation p.F265V 0.33 deleterious(0.01) probably_damaging(0.928) TCGA-KC-A7FD-01 9 69238279 69238279 T - CBWD6 Frame_Shift_Del p.T205Qfs*9 0.28 TCGA-KC-A7FE-01 12 57843452 57843452 C T INHBC Nonsense_Mutation p.R236* 0.08 TCGA-KC-A7FE-01 17 663480 663480 T G GLOD4 Splice_Site p.X278_splice 0.06 TCGA-KC-A7FE-01 18 2539121 2539121 G C METTL4 Missense_Mutation p.P433A 0.08 tolerated(0.18) benign(0.049) TCGA-KC-A7FE-01 1 160651208 160651208 C T CD48 Missense_Mutation p.D146N 0.17 tolerated(1) benign(0.003) TCGA-KC-A7FE-01 1 179833893 179833893 G A TOR1AIP2 Intron 0.10 TCGA-KC-A7FE-01 2 1426846 1426846 G A TPO Missense_Mutation p.V42I 0.07 tolerated(0.55) benign(0.001) TCGA-KC-A7FE-01 4 162697126 162697126 G A FSTL5 Silent p.G170G 0.12 TCGA-KC-A7FE-01 5 38438486 38438486 G A EGFLAM Missense_Mutation p.S798N 0.12 tolerated(0.1) benign(0.049) TCGA-KC-A7FE-01 6 99852521 99852521 T G PNISR Missense_Mutation p.I354L 0.14 tolerated(0.11) benign(0.242) TCGA-KK-A59V-01 10 101486760 101486760 G A COX15 Missense_Mutation p.R183C 0.17 deleterious(0.02) benign(0.22) TCGA-KK-A59V-01 10 101825108 101825108 G A CPN1 Missense_Mutation p.A199V 0.19 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 10 102089873 102089873 G - PKD2L1 5'UTR 0.30 TCGA-KK-A59V-01 10 103588510 103588510 C - KCNIP2 Intron 0.33 TCGA-KK-A59V-01 10 104176689 104176689 G - PSD Frame_Shift_Del p.P36Qfs*28 0.13 TCGA-KK-A59V-01 10 105362575 105362575 C T SH3PXD2A Silent p.S772S 0.30 TCGA-KK-A59V-01 10 12131158 12131158 C T DHTKD1 Silent p.A297A 0.05 TCGA-KK-A59V-01 10 121596512 121596512 G A MCMBP Missense_Mutation p.L482F 0.24 deleterious(0.01) probably_damaging(0.944) TCGA-KK-A59V-01 10 124273920 124273920 C T HTRA1 3'UTR 0.23 TCGA-KK-A59V-01 10 124810572 124810572 A G ACADSB Missense_Mutation p.Q333R 0.17 tolerated(0.06) probably_damaging(0.991) TCGA-KK-A59V-01 10 126714845 126714845 C T CTBP2 Missense_Mutation p.R495H 0.04 deleterious_low_confidence(0.05) probably_damaging(0.991) TCGA-KK-A59V-01 10 127462562 127462562 G A MMP21 Missense_Mutation p.R179W 0.33 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 10 128973691 128973691 C T FAM196A Silent p.S323S 0.30 TCGA-KK-A59V-01 10 131977798 131977798 G A GLRX3 Intron 0.25 TCGA-KK-A59V-01 10 13264116 13264116 C T UCMA Missense_Mutation p.R135H 0.22 deleterious(0.04) benign(0.201) TCGA-KK-A59V-01 10 133949508 133949508 C T JAKMIP3 Silent p.N348N 0.37 TCGA-KK-A59V-01 10 13639494 13639494 A - PRPF18 Frame_Shift_Del p.E37Kfs*23 0.17 TCGA-KK-A59V-01 10 15145385 15145385 G A RPP38 Silent p.S24S 0.28 TCGA-KK-A59V-01 10 26463097 26463097 G T MYO3A Nonsense_Mutation p.E1302* 0.19 TCGA-KK-A59V-01 10 28272875 28272875 G A ARMC4 Missense_Mutation p.P239L 0.12 tolerated(0.08) possibly_damaging(0.857) TCGA-KK-A59V-01 10 3189816 3189816 C T PITRM1 Missense_Mutation p.R729Q 0.22 tolerated(0.22) benign(0.055) TCGA-KK-A59V-01 10 44874076 44874076 T C CXCL12 Intron 0.24 TCGA-KK-A59V-01 10 46272820 46272820 A G FAM21C Missense_Mutation p.S748G 0.04 tolerated(0.24) benign(0.009) TCGA-KK-A59V-01 10 48428868 48428868 G A GDF10 Missense_Mutation p.R340C 0.38 deleterious(0) probably_damaging(0.994) TCGA-KK-A59V-01 10 5691016 5691016 G A ASB13 Missense_Mutation p.A145V 0.30 deleterious(0.05) probably_damaging(0.998) TCGA-KK-A59V-01 10 69648852 69648852 A - SIRT1 Frame_Shift_Del p.I256Lfs*2 0.18 TCGA-KK-A59V-01 10 71883673 71883673 G A AIFM2 Silent p.S56S 0.26 TCGA-KK-A59V-01 10 73575024 73575024 A T CDH23 Missense_Mutation p.T1112S 0.42 deleterious_low_confidence(0) benign(0.005) TCGA-KK-A59V-01 10 78647236 78647236 C T KCNMA1 Missense_Mutation p.V1150M 0.30 tolerated(0.05) benign(0.064) TCGA-KK-A59V-01 10 81072446 81072446 C - ZMIZ1 Frame_Shift_Del p.D1051Tfs*73 0.24 TCGA-KK-A59V-01 10 83635352 83635352 C T NRG3 Missense_Mutation p.L86F 0.28 deleterious(0) probably_damaging(0.986) TCGA-KK-A59V-01 10 86007450 86007450 G A RGR Silent p.A61A 0.22 TCGA-KK-A59V-01 10 89550131 89550132 TG - ATAD1 Frame_Shift_Del p.T106Sfs*12 0.27 TCGA-KK-A59V-01 10 90341967 90341967 T - RNLS Frame_Shift_Del p.K72Nfs*10 0.24 TCGA-KK-A59V-01 10 96495025 96495025 C T CYP2C18 Missense_Mutation p.R433W 0.20 deleterious(0.01) possibly_damaging(0.817) TCGA-KK-A59V-01 10 99132912 99132912 G A RRP12 Missense_Mutation p.P691L 0.22 deleterious(0) possibly_damaging(0.675) TCGA-KK-A59V-01 11 10503681 10503681 G A AMPD3 Silent p.A175A 0.29 TCGA-KK-A59V-01 11 10503688 10503688 G A AMPD3 Missense_Mutation p.A178T 0.28 deleterious(0.02) possibly_damaging(0.651) TCGA-KK-A59V-01 11 10786119 10786119 C T CTR9 Missense_Mutation p.R480C 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-KK-A59V-01 11 114183174 114183174 C T NNMT Missense_Mutation p.A257V 0.11 deleterious(0) probably_damaging(0.947) TCGA-KK-A59V-01 11 117310075 117310075 G A DSCAML1 Missense_Mutation p.R1411C 0.27 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 11 118984807 118984807 C T C2CD2L Silent p.D548D 0.22 TCGA-KK-A59V-01 11 11977723 11977724 CT - USP47 3'UTR 0.22 TCGA-KK-A59V-01 11 121476199 121476199 T C SORL1 Missense_Mutation p.Y1623H 0.26 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 11 124761327 124761327 G A ROBO4 Missense_Mutation p.R606C 0.21 tolerated(0.19) benign(0.003) TCGA-KK-A59V-01 11 1262500 1262500 G A MUC5B Missense_Mutation p.E1464K 0.36 unknown(0) TCGA-KK-A59V-01 11 1267116 1267116 G A MUC5B Silent p.T3002T 0.26 TCGA-KK-A59V-01 11 128781963 128781963 C T KCNJ5 Silent p.D265D 0.27 TCGA-KK-A59V-01 11 12901217 12901217 G A TEAD1 Intron 0.32 TCGA-KK-A59V-01 11 130289058 130289058 C T ADAMTS8 Missense_Mutation p.D284N 0.27 tolerated(0.21) probably_damaging(0.909) TCGA-KK-A59V-01 11 130784835 130784835 C T SNX19 Missense_Mutation p.E334K 0.28 tolerated(0.07) benign(0.041) TCGA-KK-A59V-01 11 134095073 134095074 AG - VPS26B Frame_Shift_Del p.S21* 0.29 TCGA-KK-A59V-01 11 16340073 16340073 G A SOX6 Missense_Mutation p.R122C 0.31 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 11 1780295 1780295 G A CTSD Silent p.S125S 0.31 TCGA-KK-A59V-01 11 18332308 18332308 T A HPS5 Missense_Mutation p.N153Y 0.29 tolerated(0.05) possibly_damaging(0.819) TCGA-KK-A59V-01 11 18956195 18956195 G A MRGPRX1 Missense_Mutation p.A46V 0.17 tolerated(0.08) benign(0.38) TCGA-KK-A59V-01 11 2416745 2416745 G A CD81 Missense_Mutation p.E152K 0.28 tolerated(0.83) benign(0.184) TCGA-KK-A59V-01 11 380294 380294 C T B4GALNT4 Silent p.D906D 0.23 TCGA-KK-A59V-01 11 43465702 43465702 C T TTC17 Missense_Mutation p.R870C 0.30 tolerated(0.08) possibly_damaging(0.54) TCGA-KK-A59V-01 11 44098898 44098898 G A ACCS Missense_Mutation p.R209Q 0.25 tolerated(0.34) benign(0.106) TCGA-KK-A59V-01 11 45893726 45893726 A G CRY2 Missense_Mutation p.K597E 0.26 deleterious_low_confidence(0.03) benign(0.202) TCGA-KK-A59V-01 11 46921856 46921856 G A LRP4 Silent p.D91D 0.24 TCGA-KK-A59V-01 11 47360137 47360137 C T MYBPC3 Missense_Mutation p.V748I 0.21 tolerated(0.26) benign(0.006) TCGA-KK-A59V-01 11 51515877 51515877 C T OR4C46 Missense_Mutation p.A199V 0.07 tolerated_low_confidence(0.05) possibly_damaging(0.562) TCGA-KK-A59V-01 11 55036727 55036727 C T TRIM48 Silent p.S196S 0.26 TCGA-KK-A59V-01 11 5510727 5510727 C T OR52D1 Missense_Mutation p.T264I 0.33 deleterious(0) probably_damaging(0.975) TCGA-KK-A59V-01 11 56467959 56467959 C T OR9G1 Silent p.G32G 0.18 TCGA-KK-A59V-01 11 59415348 59415348 C T PATL1 Missense_Mutation p.R591Q 0.19 tolerated(0.06) benign(0.051) TCGA-KK-A59V-01 11 60615458 60615458 C T CCDC86 Nonsense_Mutation p.R274* 0.30 TCGA-KK-A59V-01 11 62455621 62455621 G A LRRN4CL Silent p.D120D 0.26 TCGA-KK-A59V-01 11 63672512 63672512 G A MARK2 Missense_Mutation p.R644H 0.30 deleterious(0) probably_damaging(0.935) TCGA-KK-A59V-01 11 64129351 64129351 C - RPS6KA4 Frame_Shift_Del p.P263Lfs*112 0.27 TCGA-KK-A59V-01 11 64627665 64627665 C T EHD1 Missense_Mutation p.V216M 0.20 deleterious(0) possibly_damaging(0.705) TCGA-KK-A59V-01 11 65124395 65124395 G A TIGD3 Silent p.P372P 0.28 TCGA-KK-A59V-01 11 6519838 6519838 C A DNHD1 Silent p.V131V 0.03 TCGA-KK-A59V-01 11 65303495 65303495 G A SCYL1 Silent p.A486A 0.29 TCGA-KK-A59V-01 11 6592533 6592534 - G DNHD1 Frame_Shift_Ins p.E4599Gfs*16 0.19 TCGA-KK-A59V-01 11 66050214 66050215 - A CNIH2 Frame_Shift_Ins p.N56Kfs*59 0.29 TCGA-KK-A59V-01 11 66063149 66063149 C - TMEM151A 3'UTR 0.35 TCGA-KK-A59V-01 11 66834316 66834316 C T RHOD Missense_Mutation p.R110W 0.29 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 11 68664011 68664011 G A MRPL21 Missense_Mutation p.A123V 0.24 tolerated(0.14) benign(0.028) TCGA-KK-A59V-01 11 68822732 68822732 G A TPCN2 Missense_Mutation p.R114H 0.29 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 11 6913367 6913367 C T OR2D2 Missense_Mutation p.R122H 0.29 deleterious(0.02) benign(0.273) TCGA-KK-A59V-01 11 70507841 70507841 G A SHANK2 Intron 0.04 TCGA-KK-A59V-01 11 72004321 72004321 C T CLPB 3'UTR 0.23 TCGA-KK-A59V-01 11 720196 720196 G A EPS8L2 Silent p.S100S 0.07 TCGA-KK-A59V-01 11 72141383 72141383 C T CLPB Missense_Mutation p.R143H 0.19 deleterious(0.01) benign(0.035) TCGA-KK-A59V-01 11 72420933 72420933 G A ARAP1 Missense_Mutation p.T502M 0.25 deleterious(0) possibly_damaging(0.547) TCGA-KK-A59V-01 11 73714927 73714927 G - UCP3 Frame_Shift_Del p.L257Sfs*4 0.19 TCGA-KK-A59V-01 11 771082 771082 G A PDDC1 Silent p.H189H 0.31 TCGA-KK-A59V-01 11 792012 792012 G A SLC25A22 Missense_Mutation p.A292V 0.18 tolerated(0.46) possibly_damaging(0.894) TCGA-KK-A59V-01 11 8060333 8060333 G A TUB 5'UTR 0.11 TCGA-KK-A59V-01 11 95519329 95519329 C T FAM76B Missense_Mutation p.C106Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-KK-A59V-01 12 1017928 1017928 C - WNK1 Frame_Shift_Del p.P2375Qfs*15 0.30 TCGA-KK-A59V-01 12 102125434 102125434 C T SYCP3 Missense_Mutation p.R155Q 0.14 tolerated(0.26) benign(0.153) TCGA-KK-A59V-01 12 107937778 107937778 C - BTBD11 Frame_Shift_Del p.L453Cfs*53 0.11 TCGA-KK-A59V-01 12 109522826 109522826 C T USP30 Missense_Mutation p.P413S 0.04 tolerated(0.28) benign(0.016) TCGA-KK-A59V-01 12 113534571 113534571 G A DTX1 Missense_Mutation p.G564S 0.24 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 12 118199031 118199031 C T KSR2 Silent p.A257A 0.29 TCGA-KK-A59V-01 12 122213655 122213655 G A TMEM120B 3'UTR 0.33 TCGA-KK-A59V-01 12 122359385 122359385 C T WDR66 Silent p.G58G 0.32 TCGA-KK-A59V-01 12 124317860 124317860 A - DNAH10 Frame_Shift_Del p.T1466Rfs*4 0.24 TCGA-KK-A59V-01 12 124416490 124416490 C A DNAH10 Silent p.A4259A 0.07 TCGA-KK-A59V-01 12 124824936 124824936 G A NCOR2 Nonsense_Mutation p.R1798* 0.25 TCGA-KK-A59V-01 12 12788823 12788823 G A CREBL2 Missense_Mutation p.R43Q 0.27 deleterious(0) probably_damaging(0.959) TCGA-KK-A59V-01 12 12870961 12870962 - T CDKN1B Frame_Shift_Ins p.Q65Sfs*60 0.23 TCGA-KK-A59V-01 12 130184705 130184705 G - TMEM132D Frame_Shift_Del p.T207Rfs*75 0.19 TCGA-KK-A59V-01 12 130648819 130648819 C T FZD10 Silent p.I444I 0.20 TCGA-KK-A59V-01 12 132402066 132402066 C - ULK1 Frame_Shift_Del p.Q767Rfs*57 0.26 TCGA-KK-A59V-01 12 133254166 133254166 C T POLE Missense_Mutation p.V240M 0.33 deleterious(0) probably_damaging(0.973) TCGA-KK-A59V-01 12 14781608 14781608 T - GUCY2C Frame_Shift_Del p.I741Lfs*24 0.27 TCGA-KK-A59V-01 12 15035143 15035143 C T MGP Missense_Mutation p.R106H 0.06 tolerated(0.55) benign(0.171) TCGA-KK-A59V-01 12 19653128 19653128 G T AEBP2 Missense_Mutation p.K424N 0.38 tolerated_low_confidence(0.51) benign(0.004) TCGA-KK-A59V-01 12 29630469 29630469 C T OVCH1 Missense_Mutation p.R371H 0.26 deleterious(0.02) benign(0.08) TCGA-KK-A59V-01 12 31135554 31135554 G A TSPAN11 Missense_Mutation p.D182N 0.21 tolerated(0.06) probably_damaging(1) TCGA-KK-A59V-01 12 32135664 32135664 G A KIAA1551 Missense_Mutation p.R592H 0.24 deleterious(0.02) benign(0) TCGA-KK-A59V-01 12 32902905 32902905 G A YARS2 Missense_Mutation p.R414C 0.28 tolerated(0.21) benign(0.002) TCGA-KK-A59V-01 12 49170939 49170939 C T ADCY6 Missense_Mutation p.D442N 0.28 deleterious(0) probably_damaging(0.988) TCGA-KK-A59V-01 12 49998227 49998227 G A FAM186B Missense_Mutation p.A64V 0.10 tolerated(0.28) benign(0.093) TCGA-KK-A59V-01 12 49999241 49999241 G - FAM186B Frame_Shift_Del p.P7Hfs*4 0.22 TCGA-KK-A59V-01 12 50472316 50472316 G A ASIC1 Missense_Mutation p.R317H 0.21 deleterious(0) probably_damaging(0.961) TCGA-KK-A59V-01 12 5154041 5154041 C T KCNA5 Missense_Mutation p.P243L 0.27 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 12 52184185 52184185 G A SCN8A Missense_Mutation p.G1475R 0.26 tolerated(0.11) benign(0.236) TCGA-KK-A59V-01 12 52681014 52681014 G A KRT81 Silent p.G373G 0.18 TCGA-KK-A59V-01 12 52882150 52882150 G A KRT6A Silent p.I462I 0.20 TCGA-KK-A59V-01 12 53242577 53242577 C - KRT78 Frame_Shift_Del p.C47Afs*40 0.16 TCGA-KK-A59V-01 12 54379096 54379096 C T HOXC10 Missense_Mutation p.A18V 0.25 tolerated(0.18) benign(0.001) TCGA-KK-A59V-01 12 55795222 55795222 A - OR6C65 Frame_Shift_Del p.I306Yfs*4 0.16 TCGA-KK-A59V-01 12 56721408 56721408 A G PAN2 Missense_Mutation p.L220P 0.26 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 12 6161936 6161936 C T VWF Silent p.P653P 0.33 TCGA-KK-A59V-01 12 63543657 63543657 G A AVPR1A Silent p.S320S 0.28 TCGA-KK-A59V-01 12 6701672 6701672 T - CHD4 Frame_Shift_Del p.K945Nfs*28 0.21 TCGA-KK-A59V-01 12 69651670 69651670 C - CPSF6 Frame_Shift_Del p.P228Hfs*14 0.24 TCGA-KK-A59V-01 12 73056913 73056913 C T TRHDE Missense_Mutation p.R1005C 0.28 deleterious(0) possibly_damaging(0.483) TCGA-KK-A59V-01 12 8212678 8212678 A - C3AR1 Frame_Shift_Del p.L35Yfs*16 0.23 TCGA-KK-A59V-01 12 8375299 8375299 C T FAM90A1 Missense_Mutation p.E172K 0.26 tolerated(1) benign(0.001) TCGA-KK-A59V-01 12 89744489 89744489 G A DUSP6 Silent p.N238N 0.03 TCGA-KK-A59V-01 12 91348186 91348186 A G CCER1 Missense_Mutation p.Y112H 0.26 deleterious(0.05) probably_damaging(0.934) TCGA-KK-A59V-01 12 9227323 9227323 A - A2M Frame_Shift_Del p.Y1197Tfs*12 0.14 TCGA-KK-A59V-01 12 99020465 99020465 T C IKBIP Missense_Mutation p.N126S 0.30 tolerated(1) benign(0.001) TCGA-KK-A59V-01 13 101755543 101755543 C T NALCN Missense_Mutation p.G1013S 0.05 tolerated(0.06) probably_damaging(0.98) TCGA-KK-A59V-01 13 108863523 108863523 G A LIG4 Missense_Mutation p.R32C 0.25 deleterious(0) probably_damaging(0.964) TCGA-KK-A59V-01 13 113053404 113053404 A G SPACA7 Missense_Mutation p.Q89R 0.12 tolerated(0.07) benign(0.206) TCGA-KK-A59V-01 13 113212589 113212589 C T TUBGCP3 Missense_Mutation p.V157M 0.30 tolerated(0.35) benign(0.001) TCGA-KK-A59V-01 13 113772753 113772753 G A F7 Missense_Mutation p.G278R 0.28 deleterious(0) probably_damaging(0.978) TCGA-KK-A59V-01 13 114083366 114083366 C T ADPRHL1 Missense_Mutation p.A183T 0.09 deleterious(0) probably_damaging(0.981) TCGA-KK-A59V-01 13 22246272 22246272 T C FGF9 Missense_Mutation p.L74S 0.42 deleterious(0) probably_damaging(0.981) TCGA-KK-A59V-01 13 22255282 22255282 T A FGF9 Missense_Mutation p.S127T 0.22 tolerated(0.06) benign(0.316) TCGA-KK-A59V-01 13 23911843 23911843 A - SACS Frame_Shift_Del p.S2058Lfs*19 0.34 TCGA-KK-A59V-01 13 25029157 25029157 G A PARP4 Missense_Mutation p.T919I 0.31 deleterious(0) probably_damaging(0.974) TCGA-KK-A59V-01 13 31227350 31227350 C T USPL1 Missense_Mutation p.A435V 0.23 tolerated(0.13) benign(0.016) TCGA-KK-A59V-01 13 41767598 41767598 G A KBTBD7 Missense_Mutation p.R266C 0.09 deleterious(0.01) probably_damaging(1) TCGA-KK-A59V-01 13 43180811 43180811 A T TNFSF11 Missense_Mutation p.Q237H 0.31 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 13 46629960 46629960 G A CPB2 Missense_Mutation p.R342C 0.23 deleterious(0.02) possibly_damaging(0.798) TCGA-KK-A59V-01 13 48947629 48947629 G A RB1 Splice_Site p.X405_splice 0.06 TCGA-KK-A59V-01 13 49030367 49030368 - A RB1 Frame_Shift_Ins p.G617Rfs*36 0.20 TCGA-KK-A59V-01 13 75915275 75915275 C T TBC1D4 Missense_Mutation p.G533R 0.28 deleterious(0.01) probably_damaging(1) TCGA-KK-A59V-01 14 100615918 100615918 A G DEGS2 Missense_Mutation p.F71S 0.23 deleterious(0.02) probably_damaging(1) TCGA-KK-A59V-01 14 102482350 102482350 G A DYNC1H1 Missense_Mutation p.R2467H 0.33 possibly_damaging(0.616) TCGA-KK-A59V-01 14 102816276 102816276 G A CINP Missense_Mutation p.T154M 0.25 deleterious(0.04) probably_damaging(1) TCGA-KK-A59V-01 14 105054176 105054176 C T C14orf180 Missense_Mutation p.R68C 0.28 deleterious(0) benign(0.341) TCGA-KK-A59V-01 14 20779552 20779552 T - CCNB1IP1 3'UTR 0.44 TCGA-KK-A59V-01 14 21876686 21876686 C T CHD8 Missense_Mutation p.G839R 0.19 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 14 22192114 22192114 C T TRAV3 5'UTR 0.32 TCGA-KK-A59V-01 14 23444255 23444255 T C AJUBA Missense_Mutation p.N433S 0.19 tolerated(0.41) possibly_damaging(0.874) TCGA-KK-A59V-01 14 23884341 23884341 C T MYH7 Missense_Mutation p.G1808S 0.29 tolerated(0.11) probably_damaging(0.999) TCGA-KK-A59V-01 14 24542775 24542776 - T CPNE6 Frame_Shift_Ins p.E82* 0.29 TCGA-KK-A59V-01 14 24566322 24566322 G A PCK2 Missense_Mutation p.R84Q 0.30 tolerated(0.41) benign(0.041) TCGA-KK-A59V-01 14 24619809 24619809 G - RNF31 Frame_Shift_Del p.D402Mfs*90 0.28 TCGA-KK-A59V-01 14 24718466 24718467 - G TGM1 3'UTR 0.22 TCGA-KK-A59V-01 14 24760345 24760345 C T DHRS1 Missense_Mutation p.G269S 0.22 deleterious(0) probably_damaging(0.972) TCGA-KK-A59V-01 14 32142777 32142777 G A NUBPL Silent p.R170R 0.07 TCGA-KK-A59V-01 14 44974420 44974420 C T FSCB Missense_Mutation p.A591T 0.31 tolerated(0.19) probably_damaging(0.95) TCGA-KK-A59V-01 14 45513865 45513865 C T FAM179B Missense_Mutation p.R1316C 0.21 deleterious(0.01) possibly_damaging(0.653) TCGA-KK-A59V-01 14 53518597 53518597 G A DDHD1 Missense_Mutation p.P829L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.657) TCGA-KK-A59V-01 14 55433311 55433311 C T WDHD1 Missense_Mutation p.R731H 0.27 deleterious(0.03) benign(0.081) TCGA-KK-A59V-01 14 56763645 56763645 G T PELI2 Missense_Mutation p.G342C 0.31 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 14 59965595 59965595 C T JKAMP Silent p.T203T 0.33 TCGA-KK-A59V-01 14 64496688 64496688 A G SYNE2 Missense_Mutation p.T2264A 0.41 benign(0.006) TCGA-KK-A59V-01 14 68191299 68191299 G A RDH12 Missense_Mutation p.A60T 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-KK-A59V-01 14 69256455 69256455 C - ZFP36L1 Frame_Shift_Del p.G271Vfs*36 0.11 TCGA-KK-A59V-01 14 75143386 75143386 G A AREL1 Missense_Mutation p.P184L 0.18 tolerated(0.64) benign(0.006) TCGA-KK-A59V-01 14 75474467 75474469 GAA - EIF2B2 In_Frame_Del p.E293del 0.29 TCGA-KK-A59V-01 14 75558141 75558141 G A NEK9 Silent p.G758G 0.31 TCGA-KK-A59V-01 14 80668610 80668610 C T DIO2 3'Flank 0.08 TCGA-KK-A59V-01 14 80677671 80677671 C T DIO2 Missense_Mutation p.G49R 0.19 tolerated(0.05) benign(0.048) TCGA-KK-A59V-01 14 86088044 86088044 G A FLRT2 Silent p.P62P 0.31 TCGA-KK-A59V-01 14 91444844 91444844 C T RPS6KA5 Missense_Mutation p.R67H 0.33 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 14 91700524 91700524 C T GPR68 Missense_Mutation p.E291K 0.27 deleterious(0) possibly_damaging(0.532) TCGA-KK-A59V-01 14 95662949 95662949 T - CLMN Frame_Shift_Del p.K865Rfs*10 0.37 TCGA-KK-A59V-01 14 95903246 95903246 A G SYNE3 Silent p.L817L 0.04 TCGA-KK-A59V-01 14 99641823 99641823 C T BCL11B Silent p.T450T 0.28 TCGA-KK-A59V-01 15 25953223 25953223 G A ATP10A Silent p.C825C 0.12 TCGA-KK-A59V-01 15 28386876 28386876 C A HERC2 Splice_Site p.X3939_splice 0.27 TCGA-KK-A59V-01 15 34649163 34649163 C T NUTM1 Missense_Mutation p.T957I 0.27 tolerated(0.1) benign(0.211) TCGA-KK-A59V-01 15 34657848 34657848 C T LPCAT4 Missense_Mutation p.V57I 0.35 tolerated(0.68) benign(0.006) TCGA-KK-A59V-01 15 39544513 39544513 G A C15orf54 Silent p.T59T 0.28 TCGA-KK-A59V-01 15 40294929 40294929 C T EIF2AK4 Missense_Mutation p.R1059C 0.31 tolerated(0.11) possibly_damaging(0.67) TCGA-KK-A59V-01 15 40330494 40330496 TCT - SRP14 In_Frame_Del p.K66del 0.19 TCGA-KK-A59V-01 15 40993313 40993313 C A RAD51 Missense_Mutation p.H47N 0.31 tolerated(0.41) benign(0.008) TCGA-KK-A59V-01 15 41145959 41145959 C T SPINT1 Missense_Mutation p.R265C 0.06 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 15 42363730 42363730 G A PLA2G4D Silent p.F531F 0.31 TCGA-KK-A59V-01 15 43443992 43443992 C T TMEM62 Missense_Mutation p.R291W 0.07 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 15 43733757 43733757 T - TP53BP1 Frame_Shift_Del p.N1022Mfs*20 0.20 TCGA-KK-A59V-01 15 44858060 44858060 A G SPG11 Missense_Mutation p.F2331L 0.16 deleterious(0.04) possibly_damaging(0.682) TCGA-KK-A59V-01 15 48733951 48733951 A C FBN1 Missense_Mutation p.F2044V 0.05 possibly_damaging(0.622) TCGA-KK-A59V-01 15 49036443 49036443 T - CEP152 Frame_Shift_Del p.I1277Lfs*20 0.20 TCGA-KK-A59V-01 15 52667640 52667640 C T MYO5A Missense_Mutation p.R813H 0.33 deleterious(0) possibly_damaging(0.879) TCGA-KK-A59V-01 15 52903829 52903829 G A FAM214A Missense_Mutation p.A116V 0.29 tolerated(0.36) benign(0.048) TCGA-KK-A59V-01 15 56388644 56388644 G A RFX7 Missense_Mutation p.R428C 0.22 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 15 58306166 58306166 G A ALDH1A2 Missense_Mutation p.R85C 0.27 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 15 62985084 62985084 G A TLN2 Missense_Mutation p.E387K 0.28 deleterious(0) possibly_damaging(0.788) TCGA-KK-A59V-01 15 64506280 64506280 C T CSNK1G1 Missense_Mutation p.R163Q 0.30 deleterious(0) probably_damaging(0.938) TCGA-KK-A59V-01 15 64966285 64966285 G - ZNF609 Frame_Shift_Del p.G412Afs*39 0.18 TCGA-KK-A59V-01 15 72197283 72197283 C T MYO9A Missense_Mutation p.R917H 0.25 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 15 74327550 74327550 C T PML Intron 0.28 TCGA-KK-A59V-01 15 74335504 74335504 C T PML Intron 0.31 TCGA-KK-A59V-01 15 80263148 80263148 C T BCL2A1 Missense_Mutation p.R105Q 0.36 tolerated(0.36) benign(0.003) TCGA-KK-A59V-01 15 81517754 81517754 G T IL16 Missense_Mutation p.S5I 0.17 deleterious(0) possibly_damaging(0.794) TCGA-KK-A59V-01 15 82523237 82523238 - C EFTUD1 Frame_Shift_Ins p.D270Rfs*9 0.25 TCGA-KK-A59V-01 15 84581902 84581902 C T ADAMTSL3 Missense_Mutation p.R587C 0.29 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 15 90172797 90172797 G A KIF7 Missense_Mutation p.T1109M 0.30 deleterious(0.01) probably_damaging(0.932) TCGA-KK-A59V-01 15 90451588 90451588 G A C15orf38-AP3S2 Silent p.D75D 0.34 TCGA-KK-A59V-01 15 91769874 91769874 C T SV2B Silent p.F127F 0.16 TCGA-KK-A59V-01 15 99500717 99500717 C T IGF1R 3'UTR 0.30 TCGA-KK-A59V-01 16 15222208 15222208 C T RP11-1186N24.5 RNA 0.13 TCGA-KK-A59V-01 16 17252746 17252746 G A XYLT1 Missense_Mutation p.A437V 0.41 deleterious(0.01) probably_damaging(0.969) TCGA-KK-A59V-01 16 1817703 1817703 G - MAPK8IP3 Frame_Shift_Del p.V1125Wfs*11 0.22 TCGA-KK-A59V-01 16 19488820 19488820 G A TMC5 Missense_Mutation p.V717M 0.31 deleterious(0.02) possibly_damaging(0.773) TCGA-KK-A59V-01 16 2025082 2025082 C T TBL3 Silent p.D206D 0.13 TCGA-KK-A59V-01 16 20429586 20429586 G A ACSM5 Missense_Mutation p.R137Q 0.39 deleterious(0.02) probably_damaging(0.994) TCGA-KK-A59V-01 16 2086422 2086422 G A SLC9A3R2 Missense_Mutation p.R171Q 0.31 deleterious(0) probably_damaging(0.982) TCGA-KK-A59V-01 16 2160097 2160097 C T PKD1 Missense_Mutation p.G1691S 0.38 possibly_damaging(0.453) TCGA-KK-A59V-01 16 2259563 2259563 G A BRICD5 Nonsense_Mutation p.R195* 0.14 TCGA-KK-A59V-01 16 2290114 2290114 G A ECI1 Nonsense_Mutation p.R259* 0.34 TCGA-KK-A59V-01 16 23080212 23080212 G A USP31 Missense_Mutation p.R1072C 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-KK-A59V-01 16 23707241 23707241 G A ERN2 Silent p.R576R 0.23 TCGA-KK-A59V-01 16 24574974 24574974 A G RBBP6 Silent p.P503P 0.22 TCGA-KK-A59V-01 16 25268328 25268328 A G ZKSCAN2 Missense_Mutation p.S41P 0.38 tolerated(0.46) possibly_damaging(0.681) TCGA-KK-A59V-01 16 2819185 2819187 TCC - SRRM2 In_Frame_Del p.S2648del 0.23 TCGA-KK-A59V-01 16 28843606 28843606 G A ATXN2L Missense_Mutation p.G468S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-KK-A59V-01 16 29708606 29708606 C T QPRT Silent p.L256L 0.20 TCGA-KK-A59V-01 16 29996668 29996668 G A TAOK2 Silent p.E519E 0.31 TCGA-KK-A59V-01 16 30002649 30002649 G A TAOK2 3'Flank 0.08 TCGA-KK-A59V-01 16 30409310 30409310 C - ZNF48 Frame_Shift_Del p.R249Dfs*43 0.26 TCGA-KK-A59V-01 16 30518157 30518157 C T ITGAL Missense_Mutation p.R830C 0.25 deleterious(0) probably_damaging(0.992) TCGA-KK-A59V-01 16 3063895 3063895 G - CLDN9 Frame_Shift_Del p.L180Sfs*196 0.25 TCGA-KK-A59V-01 16 31473606 31473606 G T ARMC5 Silent p.L246L 0.32 TCGA-KK-A59V-01 16 321398 321398 G A RGS11 Missense_Mutation p.A250V 0.36 tolerated(0.07) benign(0.196) TCGA-KK-A59V-01 16 3339479 3339479 C T ZNF263 Nonsense_Mutation p.R325* 0.24 TCGA-KK-A59V-01 16 4312619 4312619 C T TFAP4 Missense_Mutation p.R58Q 0.21 deleterious(0.02) probably_damaging(0.996) TCGA-KK-A59V-01 16 4312644 4312644 G A TFAP4 Missense_Mutation p.R50W 0.24 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 16 4516290 4516290 G A NMRAL1 Silent p.D131D 0.25 TCGA-KK-A59V-01 16 46836915 46836915 G A C16orf87 Silent p.V138V 0.19 TCGA-KK-A59V-01 16 4816064 4816064 T - ZNF500 5'UTR 0.46 TCGA-KK-A59V-01 16 4828125 4828125 C T SEPT12 Silent p.A279A 0.31 TCGA-KK-A59V-01 16 4847425 4847425 G T ROGDI 3'UTR 0.14 TCGA-KK-A59V-01 16 4934404 4934404 G A PPL Missense_Mutation p.R1418C 0.23 deleterious(0.05) benign(0.39) TCGA-KK-A59V-01 16 5041923 5041923 C T SEC14L5 Missense_Mutation p.R187C 0.44 tolerated(0.07) benign(0.001) TCGA-KK-A59V-01 16 55362955 55362955 G A IRX6 Silent p.A355A 0.47 TCGA-KK-A59V-01 16 61935343 61935344 - T CDH8 Frame_Shift_Ins p.I96Nfs*8 0.21 TCGA-KK-A59V-01 16 67006865 67006865 G T CES3 Missense_Mutation p.W543C 0.38 deleterious(0) possibly_damaging(0.643) TCGA-KK-A59V-01 16 71748731 71748731 G A PHLPP2 Intron 0.53 TCGA-KK-A59V-01 16 733031 733031 C T JMJD8 Silent p.T233T 0.41 TCGA-KK-A59V-01 16 84514303 84514303 C - TLDC1 Frame_Shift_Del p.Q364Sfs*110 0.40 TCGA-KK-A59V-01 16 84693388 84693388 G A KLHL36 Missense_Mutation p.R387H 0.26 deleterious(0.01) benign(0.411) TCGA-KK-A59V-01 16 85101007 85101007 G T KIAA0513 Splice_Site p.X110_splice 0.25 TCGA-KK-A59V-01 16 88689746 88689746 G A ZC3H18 Missense_Mutation p.R596Q 0.47 tolerated_low_confidence(0.1) unknown(0) TCGA-KK-A59V-01 16 88898438 88898438 C T GALNS Missense_Mutation p.A324T 0.22 tolerated(0.11) probably_damaging(0.97) TCGA-KK-A59V-01 16 89245892 89245892 G A CDH15 Silent p.A37A 0.28 TCGA-KK-A59V-01 16 89799939 89799939 G A ZNF276 Missense_Mutation p.V444M 0.36 deleterious(0) probably_damaging(0.997) TCGA-KK-A59V-01 17 12888013 12888013 C T ARHGAP44 Missense_Mutation p.S702L 0.24 deleterious_low_confidence(0.01) benign(0.089) TCGA-KK-A59V-01 17 1637102 1637102 G - WDR81 Frame_Shift_Del p.G1592Afs*11 0.26 TCGA-KK-A59V-01 17 1673175 1673175 G A SERPINF1 Silent p.A38A 0.26 TCGA-KK-A59V-01 17 17698444 17698444 T C RAI1 Missense_Mutation p.C728R 0.26 deleterious(0) probably_damaging(0.986) TCGA-KK-A59V-01 17 18022394 18022396 AAG - MYO15A In_Frame_Del p.K96del 0.27 TCGA-KK-A59V-01 17 18088302 18088302 C T ALKBH5 Missense_Mutation p.R249C 0.30 tolerated(0.06) possibly_damaging(0.799) TCGA-KK-A59V-01 17 18150040 18150042 CTC - FLII In_Frame_Del p.E973del 0.33 TCGA-KK-A59V-01 17 18167396 18167396 C T MIEF2 Missense_Mutation p.T239M 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-KK-A59V-01 17 18226388 18226388 C T SMCR8 3'UTR 0.27 TCGA-KK-A59V-01 17 18874469 18874469 C T SLC5A10 Missense_Mutation p.P262S 0.27 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 17 18916805 18916805 G A SLC5A10 Silent p.K371K 0.25 TCGA-KK-A59V-01 17 1961767 1961767 G A HIC1 Missense_Mutation p.A614T 0.22 tolerated(1) benign(0.021) TCGA-KK-A59V-01 17 2196168 2196168 C T SMG6 Missense_Mutation p.R752H 0.21 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 17 2280072 2280072 C T SGSM2 Silent p.C885C 0.28 TCGA-KK-A59V-01 17 26945913 26945913 G A KIAA0100 Missense_Mutation p.R1907C 0.16 deleterious(0) possibly_damaging(0.883) TCGA-KK-A59V-01 17 27285095 27285095 C T SEZ6 Silent p.S724S 0.18 TCGA-KK-A59V-01 17 27437499 27437499 C T MYO18A Silent p.A1014A 0.21 TCGA-KK-A59V-01 17 29204438 29204438 A - ATAD5 Frame_Shift_Del p.N1265Ifs*45 0.23 TCGA-KK-A59V-01 17 30666926 30666926 C T C17orf75 Missense_Mutation p.E85K 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-KK-A59V-01 17 34077124 34077124 G T GAS2L2 Missense_Mutation p.P200H 0.25 deleterious(0.02) possibly_damaging(0.557) TCGA-KK-A59V-01 17 34945826 34945826 G A GGNBP2 Silent p.T693T 0.30 TCGA-KK-A59V-01 17 3567066 3567066 G A TAX1BP3 Silent p.A117A 0.32 TCGA-KK-A59V-01 17 36734841 36734841 C T SRCIN1 Missense_Mutation p.A76T 0.42 deleterious(0) benign(0.002) TCGA-KK-A59V-01 17 37234284 37234284 G A PLXDC1 Silent p.C356C 0.28 TCGA-KK-A59V-01 17 37822127 37822127 C T TCAP Missense_Mutation p.P90L 0.23 deleterious(0) possibly_damaging(0.768) TCGA-KK-A59V-01 17 38319961 38319961 G A CASC3 Missense_Mutation p.R338Q 0.04 tolerated_low_confidence(0.12) benign(0.131) TCGA-KK-A59V-01 17 39521647 39521647 C T KRT33B Silent p.T249T 0.21 TCGA-KK-A59V-01 17 40330128 40330128 T C KCNH4 Missense_Mutation p.K192R 0.26 deleterious(0.03) benign(0.097) TCGA-KK-A59V-01 17 40342329 40342329 G T GHDC Intron 0.37 TCGA-KK-A59V-01 17 40812192 40812192 G A TUBG2 Missense_Mutation p.R63Q 0.19 deleterious(0) probably_damaging(0.993) TCGA-KK-A59V-01 17 40914372 40914372 G - RAMP2 Splice_Site p.X56_splice 0.19 TCGA-KK-A59V-01 17 42170121 42170121 G - HDAC5 Frame_Shift_Del p.P233Lfs*32 0.25 TCGA-KK-A59V-01 17 42457470 42457470 C T ITGA2B Missense_Mutation p.R551Q 0.30 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 17 43907568 43907568 C T CRHR1 Silent p.H210H 0.10 TCGA-KK-A59V-01 17 4575245 4575245 G A PELP1 Missense_Mutation p.T1014M 0.12 unknown(0) TCGA-KK-A59V-01 17 47904070 47904070 C T KAT7 Missense_Mutation p.T548M 0.05 tolerated(0.17) probably_damaging(1) TCGA-KK-A59V-01 17 48668820 48668820 G - CACNA1G Frame_Shift_Del p.G828Afs*11 0.38 TCGA-KK-A59V-01 17 5365760 5365760 C T DHX33 Missense_Mutation p.R186Q 0.27 tolerated(0.31) benign(0.08) TCGA-KK-A59V-01 17 53798255 53798255 G - TMEM100 Frame_Shift_Del p.F60Lfs*41 0.19 TCGA-KK-A59V-01 17 5405118 5405118 C T NLRP1 3'UTR 0.32 TCGA-KK-A59V-01 17 54526456 54526456 C T ANKFN1 Silent p.D375D 0.24 TCGA-KK-A59V-01 17 55193500 55193500 G A AKAP1 Silent p.A770A 0.45 TCGA-KK-A59V-01 17 56385933 56385933 G A BZRAP1 Missense_Mutation p.A1567V 0.43 tolerated(0.2) benign(0.008) TCGA-KK-A59V-01 17 56386548 56386548 G - BZRAP1 Frame_Shift_Del p.P1362Lfs*38 0.27 TCGA-KK-A59V-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.37 TCGA-KK-A59V-01 17 56572381 56572381 C T MTMR4 Missense_Mutation p.R1041Q 0.35 tolerated(0.25) benign(0.108) TCGA-KK-A59V-01 17 57335125 57335125 T C GDPD1 Missense_Mutation p.V167A 0.17 deleterious(0.02) possibly_damaging(0.852) TCGA-KK-A59V-01 17 60754670 60754670 C T MRC2 Silent p.S625S 0.21 TCGA-KK-A59V-01 17 61492927 61492927 C T TANC2 Silent p.Y1269Y 0.26 TCGA-KK-A59V-01 17 61557710 61557710 C T ACE Missense_Mutation p.T223M 0.29 tolerated(0.4) probably_damaging(0.997) TCGA-KK-A59V-01 17 61613357 61613357 G A KCNH6 Missense_Mutation p.V477M 0.31 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 17 61911540 61911540 C T SMARCD2 Missense_Mutation p.R357H 0.36 deleterious(0.02) possibly_damaging(0.679) TCGA-KK-A59V-01 17 65688788 65688788 C - PITPNC1 Frame_Shift_Del p.L263Cfs*53 0.21 TCGA-KK-A59V-01 17 68171232 68171232 G A KCNJ2 Missense_Mutation p.G18S 0.28 tolerated(0.06) benign(0.013) TCGA-KK-A59V-01 17 6941923 6941923 C T SLC16A13 Missense_Mutation p.R266C 0.05 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 17 7005025 7005025 C T ASGR2 Missense_Mutation p.G269R 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-KK-A59V-01 17 72767902 72767903 TT - NAT9 Frame_Shift_Del p.E195Gfs*94 0.30 TCGA-KK-A59V-01 17 73482398 73482398 G A KIAA0195 Silent p.S100S 0.19 TCGA-KK-A59V-01 17 73498257 73498257 G A CASKIN2 Silent p.P966P 0.33 TCGA-KK-A59V-01 17 73759207 73759207 C T GALK1 Missense_Mutation p.A167T 0.25 deleterious(0) possibly_damaging(0.725) TCGA-KK-A59V-01 17 7682662 7682662 C T DNAH2 Silent p.A1881A 0.26 TCGA-KK-A59V-01 17 76831511 76831511 C T USP36 Missense_Mutation p.R109Q 0.23 deleterious(0.05) benign(0.103) TCGA-KK-A59V-01 17 7748709 7748709 G A KDM6B 5'UTR 0.20 TCGA-KK-A59V-01 17 7753465 7753465 A T KDM6B Missense_Mutation p.I1215F 0.18 probably_damaging(0.937) TCGA-KK-A59V-01 17 7756414 7756414 C T KDM6B Silent p.D1569D 0.16 TCGA-KK-A59V-01 17 77808481 77808483 CTT - CBX4 In_Frame_Del p.K320del 0.17 TCGA-KK-A59V-01 17 77808751 77808751 G - CBX4 Frame_Shift_Del p.N231Tfs*3 0.29 TCGA-KK-A59V-01 17 78319445 78319445 G A RNF213 Missense_Mutation p.R2437Q 0.05 benign(0.243) TCGA-KK-A59V-01 17 78320755 78320756 - C RNF213 Frame_Shift_Ins p.H2876Pfs*15 0.26 TCGA-KK-A59V-01 17 7837803 7837803 G A CNTROB Missense_Mutation p.A126T 0.32 tolerated(0.55) benign(0.003) TCGA-KK-A59V-01 17 78831654 78831654 G A RPTOR Missense_Mutation p.R488Q 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-KK-A59V-01 17 79412649 79412649 C T RP11-1055B8.7 Silent p.A1035A 0.38 TCGA-KK-A59V-01 17 79426159 79426159 C T RP11-1055B8.7 Silent p.Y1895Y 0.32 TCGA-KK-A59V-01 17 79954527 79954527 G A ASPSCR1 Silent p.S246S 0.28 TCGA-KK-A59V-01 17 80285100 80285101 - G SECTM1 Frame_Shift_Ins p.L6Pfs*26 0.26 TCGA-KK-A59V-01 17 8132064 8132064 C A CTC1 Missense_Mutation p.G1123V 0.40 deleterious(0.01) possibly_damaging(0.613) TCGA-KK-A59V-01 17 8215392 8215392 C T ARHGEF15 Missense_Mutation p.P12L 0.09 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-KK-A59V-01 17 9066240 9066240 G A NTN1 Missense_Mutation p.G377S 0.28 deleterious(0) probably_damaging(0.989) TCGA-KK-A59V-01 18 12449631 12449631 C T SPIRE1 3'UTR 0.23 TCGA-KK-A59V-01 18 18546946 18546946 A G ROCK1 Missense_Mutation p.L1095S 0.08 tolerated(0.41) benign(0.004) TCGA-KK-A59V-01 18 21451595 21451595 C - LAMA3 Frame_Shift_Del p.P1658Lfs*91 0.14 TCGA-KK-A59V-01 18 2573008 2573008 C T NDC80 Silent p.S8S 0.07 TCGA-KK-A59V-01 18 28654830 28654830 G A DSC2 Silent p.D569D 0.36 TCGA-KK-A59V-01 18 2891121 2891121 C T EMILIN2 Silent p.G332G 0.21 TCGA-KK-A59V-01 18 30554609 30554609 G A CCDC178 Nonsense_Mutation p.Q809* 0.24 TCGA-KK-A59V-01 18 3215169 3215169 C T MYOM1 Missense_Mutation p.R18H 0.10 deleterious_low_confidence(0) benign(0.002) TCGA-KK-A59V-01 18 3879897 3879897 C T DLGAP1 Missense_Mutation p.V58M 0.04 tolerated(1) benign(0.002) TCGA-KK-A59V-01 18 40850401 40850401 C T SYT4 Missense_Mutation p.A395T 0.05 tolerated(0.44) benign(0.001) TCGA-KK-A59V-01 18 42281464 42281464 C T SETBP1 Silent p.G51G 0.11 TCGA-KK-A59V-01 18 44259932 44259932 G A ST8SIA5 3'UTR 0.10 TCGA-KK-A59V-01 18 47113130 47113130 C - LIPG Frame_Shift_Del p.T464Kfs*26 0.26 TCGA-KK-A59V-01 18 61390555 61390555 G A SERPINB11 Silent p.A367A 0.25 TCGA-KK-A59V-01 18 72228166 72228166 G A CNDP1 Missense_Mutation p.V127M 0.06 deleterious(0) probably_damaging(0.987) TCGA-KK-A59V-01 18 72345748 72345748 G - ZNF407 Frame_Shift_Del p.G926Vfs*14 0.08 TCGA-KK-A59V-01 18 72776115 72776115 C T ZNF407 Silent p.I2146I 0.53 TCGA-KK-A59V-01 18 76756938 76756938 C T SALL3 Silent p.G1173G 0.22 TCGA-KK-A59V-01 19 10570423 10570423 G A PDE4A Silent p.T451T 0.26 TCGA-KK-A59V-01 19 10597450 10597450 C T KEAP1 Missense_Mutation p.D585N 0.27 tolerated(0.3) benign(0.01) TCGA-KK-A59V-01 19 10690405 10690405 C T AP1M2 Missense_Mutation p.R268H 0.26 deleterious(0) probably_damaging(0.977) TCGA-KK-A59V-01 19 12767772 12767772 C T MAN2B1 Silent p.T506T 0.35 TCGA-KK-A59V-01 19 12800212 12800212 G A FBXW9 Nonsense_Mutation p.R426* 0.25 TCGA-KK-A59V-01 19 13249043 13249043 C T NACC1 Silent p.R469R 0.29 TCGA-KK-A59V-01 19 13409842 13409842 G A CACNA1A Missense_Mutation p.R869W 0.09 possibly_damaging(0.794) TCGA-KK-A59V-01 19 13868281 13868281 G A CCDC130 Missense_Mutation p.G64S 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-KK-A59V-01 19 14024105 14024105 G A CC2D1A Missense_Mutation p.R168Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 19 14029735 14029736 - C CC2D1A Frame_Shift_Ins p.R346Efs*57 0.24 TCGA-KK-A59V-01 19 14267939 14267939 C T LPHN1 Missense_Mutation p.A927T 0.28 deleterious(0.01) probably_damaging(0.919) TCGA-KK-A59V-01 19 14562728 14562728 C - PKN1 Frame_Shift_Del p.P360Qfs*8 0.26 TCGA-KK-A59V-01 19 14677003 14677003 G A NDUFB7 Missense_Mutation p.A119V 0.26 tolerated(0.16) benign(0.106) TCGA-KK-A59V-01 19 15366930 15366930 T C BRD4 Missense_Mutation p.K566E 0.20 benign(0.292) TCGA-KK-A59V-01 19 17270255 17270255 C T MYO9B Silent p.T460T 0.16 TCGA-KK-A59V-01 19 17488124 17488124 C T PLVAP 5'UTR 0.05 TCGA-KK-A59V-01 19 17608233 17608233 C T SLC27A1 Missense_Mutation p.A389V 0.45 deleterious(0) probably_damaging(0.955) TCGA-KK-A59V-01 19 17688252 17688252 G A COLGALT1 Missense_Mutation p.R370Q 0.30 tolerated(0.07) benign(0.004) TCGA-KK-A59V-01 19 17766855 17766855 G A UNC13A Missense_Mutation p.R374C 0.30 deleterious_low_confidence(0.03) benign(0.019) TCGA-KK-A59V-01 19 18507627 18507627 G A LRRC25 Silent p.S49S 0.25 TCGA-KK-A59V-01 19 18648497 18648497 C T FKBP8 Missense_Mutation p.D287N 0.21 deleterious(0.05) benign(0.023) TCGA-KK-A59V-01 19 19387409 19387409 C T SUGP1 3'UTR 0.29 TCGA-KK-A59V-01 19 20806994 20806995 - T ZNF626 3'UTR 0.20 TCGA-KK-A59V-01 19 2116221 2116221 C T AP3D1 Silent p.S686S 0.33 TCGA-KK-A59V-01 19 21476363 21476363 T - ZNF708 Frame_Shift_Del p.I469Ffs*28 0.21 TCGA-KK-A59V-01 19 2408385 2408385 G A TMPRSS9 Missense_Mutation p.V258M 0.22 tolerated(0.13) benign(0.105) TCGA-KK-A59V-01 19 2806990 2806990 G A THOP1 Missense_Mutation p.A276T 0.11 deleterious(0) benign(0.415) TCGA-KK-A59V-01 19 35250723 35250723 T C ZNF599 Missense_Mutation p.Q328R 0.29 tolerated(1) benign(0.063) TCGA-KK-A59V-01 19 3525878 3525878 C T FZR1 Missense_Mutation p.R28W 0.34 deleterious(0.02) benign(0.339) TCGA-KK-A59V-01 19 3532474 3532474 G A FZR1 Silent p.A356A 0.32 TCGA-KK-A59V-01 19 35556186 35556186 G A HPN Missense_Mutation p.G282S 0.21 deleterious(0.04) benign(0.134) TCGA-KK-A59V-01 19 3589527 3589527 G - GIPC3 Frame_Shift_Del p.A229Lfs*55 0.23 TCGA-KK-A59V-01 19 36229230 36229230 C T KMT2B Silent p.D2640D 0.29 TCGA-KK-A59V-01 19 37210375 37210375 A - ZNF567 Frame_Shift_Del p.K221Nfs*17 0.26 TCGA-KK-A59V-01 19 38597179 38597179 G A SIPA1L3 Missense_Mutation p.D678N 0.22 deleterious(0) benign(0.399) TCGA-KK-A59V-01 19 38798088 38798088 C T YIF1B Missense_Mutation p.V257I 0.20 tolerated(0.93) benign(0.005) TCGA-KK-A59V-01 19 38976306 38976306 G A RYR1 Missense_Mutation p.A1671T 0.28 benign(0.242) TCGA-KK-A59V-01 19 39406188 39406188 G A SARS2 3'Flank 0.33 TCGA-KK-A59V-01 19 39759380 39759380 C T IFNL2 Missense_Mutation p.A25V 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-KK-A59V-01 19 39879956 39879956 G A PAF1 Missense_Mutation p.R143C 0.10 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 19 39994903 39994903 C T DLL3 Missense_Mutation p.P282L 0.14 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 19 40316563 40316563 G - DYRK1B Frame_Shift_Del p.P561Rfs*3 0.09 TCGA-KK-A59V-01 19 40711065 40711065 C T MAP3K10 Silent p.F350F 0.08 TCGA-KK-A59V-01 19 40719433 40719433 C T MAP3K10 Missense_Mutation p.A616V 0.29 tolerated(0.32) benign(0.001) TCGA-KK-A59V-01 19 40720904 40720904 G A MAP3K10 Missense_Mutation p.R857H 0.27 tolerated(0.07) benign(0.006) TCGA-KK-A59V-01 19 40964125 40964125 C T BLVRB Missense_Mutation p.A91T 0.15 tolerated(1) benign(0.004) TCGA-KK-A59V-01 19 41938113 41938113 G A ATP5SL 3'UTR 0.25 TCGA-KK-A59V-01 19 42752695 42752695 C - ERF Frame_Shift_Del p.L525Sfs*6 0.35 TCGA-KK-A59V-01 19 4310270 4310270 G A FSD1 Missense_Mutation p.A116T 0.08 tolerated(0.4) benign(0.154) TCGA-KK-A59V-01 19 43690566 43690566 C T PSG5 5'UTR 0.23 TCGA-KK-A59V-01 19 43698501 43698501 T C PSG4 Missense_Mutation p.K412E 0.26 tolerated(0.18) benign(0.029) TCGA-KK-A59V-01 19 43698508 43698508 G C PSG4 Missense_Mutation p.I409M 0.28 tolerated(0.35) benign(0.06) TCGA-KK-A59V-01 19 44015716 44015716 C T ETHE1 Silent p.A126A 0.25 TCGA-KK-A59V-01 19 44278577 44278577 C T KCNN4 Silent p.A150A 0.25 TCGA-KK-A59V-01 19 4496343 4496343 C T HDGFRP2 Silent p.P423P 0.25 TCGA-KK-A59V-01 19 45211162 45211162 G A CEACAM16 Missense_Mutation p.V324M 0.23 tolerated(0.11) benign(0.146) TCGA-KK-A59V-01 19 45211237 45211237 G A CEACAM16 Missense_Mutation p.A349T 0.32 tolerated(0.4) benign(0.313) TCGA-KK-A59V-01 19 45260309 45260309 G A BCL3 Silent p.P185P 0.19 TCGA-KK-A59V-01 19 46056805 46056805 G A OPA3 Intron 0.05 TCGA-KK-A59V-01 19 46215483 46215483 G - FBXO46 Frame_Shift_Del p.P424Rfs*34 0.28 TCGA-KK-A59V-01 19 46269107 46269107 G - SIX5 Frame_Shift_Del p.A625Pfs*31 0.23 TCGA-KK-A59V-01 19 46289388 46289388 G - DMWD Frame_Shift_Del p.L456Wfs*203 0.26 TCGA-KK-A59V-01 19 48620981 48620981 C T LIG1 Missense_Mutation p.D833N 0.24 tolerated(0.06) possibly_damaging(0.454) TCGA-KK-A59V-01 19 48626217 48626217 C T LIG1 Missense_Mutation p.A736T 0.23 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 19 49000732 49000732 G - LMTK3 Frame_Shift_Del p.K1228Sfs*117 0.25 TCGA-KK-A59V-01 19 4929359 4929359 C T MIR4747 5'Flank 0.28 TCGA-KK-A59V-01 19 49363681 49363681 G A PLEKHA4 Silent p.A134A 0.28 TCGA-KK-A59V-01 19 49878142 49878142 C T DKKL1 Missense_Mutation p.R196C 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KK-A59V-01 19 5039851 5039852 - C KDM4B Frame_Shift_Ins p.K52Efs*10 0.25 TCGA-KK-A59V-01 19 50905529 50905529 C T POLD1 Silent p.L219L 0.10 TCGA-KK-A59V-01 19 50944328 50944328 G A MYBPC2 Missense_Mutation p.S255N 0.45 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 19 50984001 50984001 C T EMC10 Missense_Mutation p.P189L 0.19 tolerated(0.62) benign(0.059) TCGA-KK-A59V-01 19 51501092 51501093 - G KLK8 Frame_Shift_Ins p.Q226Pfs*5 0.23 TCGA-KK-A59V-01 19 52147073 52147073 G A SIGLEC14 Missense_Mutation p.P324L 0.31 tolerated(0.24) benign(0.127) TCGA-KK-A59V-01 19 5245857 5245857 C T PTPRS Silent p.S306S 0.20 TCGA-KK-A59V-01 19 53085961 53085961 C T ZNF701 Missense_Mutation p.R283C 0.32 tolerated(1) benign(0.001) TCGA-KK-A59V-01 19 53911653 53911653 A G ZNF765 Missense_Mutation p.Q282R 0.28 tolerated(0.33) benign(0.083) TCGA-KK-A59V-01 19 54646863 54646863 G A CNOT3 Missense_Mutation p.D12N 0.27 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 19 54663422 54663422 C T LENG1 Silent p.L4L 0.25 TCGA-KK-A59V-01 19 55738740 55738740 G A TMEM86B Missense_Mutation p.R164C 0.26 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 19 55853590 55853590 C - SUV420H2 Frame_Shift_Del p.L42Cfs*15 0.24 TCGA-KK-A59V-01 19 56206666 56206666 C - EPN1 Frame_Shift_Del p.M647* 0.47 TCGA-KK-A59V-01 19 56466960 56466961 - T NLRP8 Frame_Shift_Ins p.A515Cfs*69 0.21 TCGA-KK-A59V-01 19 58048626 58048626 C T ZNF549 Missense_Mutation p.A85V 0.21 tolerated(1) benign(0) TCGA-KK-A59V-01 19 58117717 58117717 C T ZNF530 Missense_Mutation p.S275L 0.30 tolerated(0.14) benign(0.328) TCGA-KK-A59V-01 19 58198231 58198231 C T ZNF551 Silent p.H196H 0.16 TCGA-KK-A59V-01 19 6467555 6467555 C T DENND1C Missense_Mutation p.R789Q 0.27 tolerated_low_confidence(0.69) benign(0.002) TCGA-KK-A59V-01 19 7509124 7509124 G A ARHGEF18 Silent p.T277T 0.39 TCGA-KK-A59V-01 19 7677626 7677626 G A CAMSAP3 Silent p.T776T 0.50 TCGA-KK-A59V-01 19 7928473 7928473 C T EVI5L Missense_Mutation p.P768L 0.75 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-KK-A59V-01 19 7976149 7976149 C - MAP2K7 Frame_Shift_Del p.P292Qfs*119 0.13 TCGA-KK-A59V-01 19 803588 803588 T C PTBP1 Missense_Mutation p.C23R 0.14 tolerated(0.17) possibly_damaging(0.635) TCGA-KK-A59V-01 19 9964954 9964954 G - OLFM2 Frame_Shift_Del p.R425Gfs*59 0.28 TCGA-KK-A59V-01 1 101456141 101456141 G A DPH5 Silent p.A227A 0.29 TCGA-KK-A59V-01 1 109103056 109103058 GAA - FAM102B In_Frame_Del p.K6del 0.26 TCGA-KK-A59V-01 1 109177768 109177768 G A FAM102B Missense_Mutation p.R360H 0.27 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-KK-A59V-01 1 109336253 109336253 G A STXBP3 Missense_Mutation p.R338Q 0.29 tolerated(1) probably_damaging(1) TCGA-KK-A59V-01 1 110038893 110038893 C T CYB561D1 3'UTR 0.23 TCGA-KK-A59V-01 1 11158106 11158106 G A EXOSC10 Silent p.C73C 0.10 TCGA-KK-A59V-01 1 112318870 112318870 G A KCND3 Silent p.D599D 0.25 TCGA-KK-A59V-01 1 113057604 113057604 C T WNT2B Silent p.G97G 0.26 TCGA-KK-A59V-01 1 1140762 1140762 C - TNFRSF18 Frame_Shift_Del p.V100Yfs*? 0.19 TCGA-KK-A59V-01 1 114226149 114226149 C T MAGI3 Missense_Mutation p.T1320M 0.27 tolerated_low_confidence(0.08) benign(0.209) TCGA-KK-A59V-01 1 1147441 1147441 G - TNFRSF4 Frame_Shift_Del p.P172Qfs*? 0.20 TCGA-KK-A59V-01 1 1290110 1290111 GG - MXRA8 Frame_Shift_Del p.R301Gfs*85 0.09 TCGA-KK-A59V-01 1 145699022 145699022 T C CD160 Missense_Mutation p.T157A 0.06 tolerated_low_confidence(0.64) benign(0.002) TCGA-KK-A59V-01 1 147380399 147380399 G A GJA8 Missense_Mutation p.R106H 0.31 deleterious(0.02) benign(0.157) TCGA-KK-A59V-01 1 149857821 149857821 T C HIST2H2BE Missense_Mutation p.S124G 0.20 deleterious_low_confidence(0.01) benign(0.097) TCGA-KK-A59V-01 1 150444464 150444464 A T RPRD2 Nonsense_Mutation p.K1014* 0.04 TCGA-KK-A59V-01 1 150636167 150636167 G A GOLPH3L Missense_Mutation p.R86W 0.06 deleterious(0) probably_damaging(0.995) TCGA-KK-A59V-01 1 150689638 150689638 C T HORMAD1 Missense_Mutation p.A52T 0.05 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 1 150790487 150790487 G A ARNT Missense_Mutation p.R472W 0.28 tolerated(0.18) possibly_damaging(0.884) TCGA-KK-A59V-01 1 151105902 151105902 G A SEMA6C Silent p.G649G 0.46 TCGA-KK-A59V-01 1 151340694 151340694 G A SELENBP1 Silent p.D154D 0.28 TCGA-KK-A59V-01 1 151400737 151400737 C T POGZ Missense_Mutation p.V241I 0.06 tolerated(0.11) benign(0.352) TCGA-KK-A59V-01 1 151553473 151553473 G A TUFT1 Missense_Mutation p.G355D 0.33 deleterious(0) possibly_damaging(0.856) TCGA-KK-A59V-01 1 152278093 152278093 C T FLG Missense_Mutation p.R3090H 0.29 unknown(0) TCGA-KK-A59V-01 1 153913419 153913419 C T DENND4B Silent p.R429R 0.29 TCGA-KK-A59V-01 1 154030638 154030638 G A NUP210L Missense_Mutation p.R1012C 0.30 deleterious(0.02) possibly_damaging(0.816) TCGA-KK-A59V-01 1 154321480 154321480 G A ATP8B2 Silent p.A1186A 0.28 TCGA-KK-A59V-01 1 155874275 155874275 G A RIT1 Missense_Mutation p.R103W 0.09 deleterious(0.02) probably_damaging(1) TCGA-KK-A59V-01 1 155920810 155920810 C T ARHGEF2 Missense_Mutation p.R838Q 0.37 tolerated(0.26) benign(0.004) TCGA-KK-A59V-01 1 156702121 156702121 G A RRNAD1 Silent p.A95A 0.25 TCGA-KK-A59V-01 1 156917732 156917733 - G ARHGEF11 Frame_Shift_Ins p.S724Qfs*17 0.28 TCGA-KK-A59V-01 1 159170689 159170689 G A CADM3 Missense_Mutation p.D426N 0.19 deleterious(0.01) possibly_damaging(0.744) TCGA-KK-A59V-01 1 159799839 159799839 G A SLAMF8 Missense_Mutation p.R75H 0.06 deleterious(0.01) possibly_damaging(0.874) TCGA-KK-A59V-01 1 16259480 16259480 C - SPEN Frame_Shift_Del p.A2251Qfs*102 0.23 TCGA-KK-A59V-01 1 168282117 168282117 G - TBX19 Frame_Shift_Del p.E410Sfs*4 0.22 TCGA-KK-A59V-01 1 1720558 1720558 G T GNB1 Missense_Mutation p.L284I 0.22 tolerated(0.14) possibly_damaging(0.798) TCGA-KK-A59V-01 1 17279878 17279878 C T CROCC Missense_Mutation p.R1030W 0.34 probably_damaging(0.997) TCGA-KK-A59V-01 1 173822937 173822937 G A DARS2 Missense_Mutation p.R523H 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-KK-A59V-01 1 17735625 17735625 C A RCC2 Missense_Mutation p.K510N 0.04 deleterious(0.02) benign(0.198) TCGA-KK-A59V-01 1 180914516 180914516 G A KIAA1614 Missense_Mutation p.R1122H 0.26 tolerated(0.06) possibly_damaging(0.471) TCGA-KK-A59V-01 1 183511408 183511408 A G SMG7 Missense_Mutation p.D538G 0.31 deleterious_low_confidence(0) possibly_damaging(0.772) TCGA-KK-A59V-01 1 183602245 183602245 G - ARPC5 Frame_Shift_Del p.P66Lfs*9 0.22 TCGA-KK-A59V-01 1 19666098 19666098 A G CAPZB 3'UTR 0.03 TCGA-KK-A59V-01 1 197398616 197398616 G A CRB1 Missense_Mutation p.R905Q 0.30 tolerated(0.09) benign(0.151) TCGA-KK-A59V-01 1 20005666 20005666 G A HTR6 Silent p.P376P 0.27 TCGA-KK-A59V-01 1 20009647 20009650 AGGA - TMCO4 Frame_Shift_Del p.P597Lfs*83 0.19 TCGA-KK-A59V-01 1 201618018 201618018 C T NAV1 Silent p.S74S 0.24 TCGA-KK-A59V-01 1 202698198 202698198 C T KDM5B Missense_Mutation p.R1534H 0.28 tolerated(0.09) benign(0.015) TCGA-KK-A59V-01 1 204588019 204588019 C T LRRN2 Missense_Mutation p.G368S 0.29 tolerated(1) benign(0.195) TCGA-KK-A59V-01 1 205210851 205210851 C T TMCC2 Silent p.P142P 0.20 TCGA-KK-A59V-01 1 205498652 205498652 G A CDK18 Silent p.L424L 0.06 TCGA-KK-A59V-01 1 206757996 206757996 G A RASSF5 Missense_Mutation p.R323Q 0.22 tolerated(0.33) benign(0.017) TCGA-KK-A59V-01 1 21014273 21014273 G - KIF17 Frame_Shift_Del p.Q516Rfs*95 0.09 TCGA-KK-A59V-01 1 214170044 214170044 T C PROX1 Missense_Mutation p.Y56H 0.07 tolerated(0.42) possibly_damaging(0.756) TCGA-KK-A59V-01 1 214556938 214556938 C T PTPN14 Missense_Mutation p.G754S 0.05 tolerated(0.36) probably_damaging(0.999) TCGA-KK-A59V-01 1 215793922 215793922 A - KCTD3 Frame_Shift_Del p.S806Vfs*16 0.22 TCGA-KK-A59V-01 1 220340962 220340962 T G RAB3GAP2 Missense_Mutation p.E954D 0.28 tolerated(0.33) benign(0.002) TCGA-KK-A59V-01 1 221057685 221057685 G A HLX Missense_Mutation p.R369H 0.31 tolerated(0.05) possibly_damaging(0.781) TCGA-KK-A59V-01 1 22161191 22161191 G A HSPG2 Silent p.H3567H 0.36 TCGA-KK-A59V-01 1 223178967 223178967 G A DISP1 Missense_Mutation p.E1410K 0.33 tolerated_low_confidence(0.38) benign(0.003) TCGA-KK-A59V-01 1 226027660 226027660 G A EPHX1 Missense_Mutation p.V285I 0.33 deleterious(0.05) benign(0.067) TCGA-KK-A59V-01 1 228210434 228210434 G A WNT3A Silent p.P46P 0.32 TCGA-KK-A59V-01 1 228557668 228557668 G A OBSCN Missense_Mutation p.G7622S 0.23 probably_damaging(0.997) TCGA-KK-A59V-01 1 23234628 23234628 C T EPHB2 Silent p.D774D 0.26 TCGA-KK-A59V-01 1 233190117 233190117 G A PCNXL2 Silent p.G1416G 0.24 TCGA-KK-A59V-01 1 238090718 238090718 G A RP11-193H5.1 RNA 0.29 TCGA-KK-A59V-01 1 245861488 245861488 G A KIF26B Missense_Mutation p.V1969I 0.28 tolerated(0.35) unknown(0) TCGA-KK-A59V-01 1 247201212 247201212 A - ZNF670 Frame_Shift_Del p.S237Pfs*48 0.23 TCGA-KK-A59V-01 1 248366442 248366442 A G OR2M3 Missense_Mutation p.T25A 0.29 tolerated(0.48) benign(0.103) TCGA-KK-A59V-01 1 249211136 249211136 G A PGBD2 Missense_Mutation p.R118H 0.21 tolerated(0.24) benign(0.004) TCGA-KK-A59V-01 1 249211881 249211881 G - PGBD2 Frame_Shift_Del p.V368* 0.25 TCGA-KK-A59V-01 1 26012962 26012962 G A MAN1C1 Missense_Mutation p.R191H 0.25 tolerated(0.15) benign(0.003) TCGA-KK-A59V-01 1 26189723 26189723 C T PAQR7 Missense_Mutation p.R203H 0.31 deleterious(0) probably_damaging(0.915) TCGA-KK-A59V-01 1 27101370 27101370 G A ARID1A Missense_Mutation p.R1551H 0.24 unknown(0) TCGA-KK-A59V-01 1 27630137 27630137 C T WDTC1 Silent p.G497G 0.27 TCGA-KK-A59V-01 1 27680355 27680356 CT - SYTL1 3'UTR 0.24 TCGA-KK-A59V-01 1 27873946 27873946 C T AHDC1 Missense_Mutation p.D1561N 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-KK-A59V-01 1 28290024 28290024 C T XKR8 Missense_Mutation p.R104W 0.18 tolerated(0.13) benign(0.082) TCGA-KK-A59V-01 1 29069851 29069851 C T YTHDF2 Missense_Mutation p.R357C 0.04 deleterious(0) probably_damaging(0.993) TCGA-KK-A59V-01 1 31347383 31347383 G A SDC3 Missense_Mutation p.P308L 0.28 deleterious(0.01) unknown(0) TCGA-KK-A59V-01 1 32050601 32050601 G A TINAGL1 Missense_Mutation p.R274H 0.24 tolerated(0.38) benign(0.027) TCGA-KK-A59V-01 1 32130816 32130816 C A COL16A1 Missense_Mutation p.G1171V 0.07 unknown(0) TCGA-KK-A59V-01 1 33799804 33799804 C T PHC2 Missense_Mutation p.G549S 0.32 deleterious(0.05) probably_damaging(0.995) TCGA-KK-A59V-01 1 35916052 35916052 C T KIAA0319L Silent p.T707T 0.30 TCGA-KK-A59V-01 1 36939479 36939479 G A CSF3R Missense_Mutation p.A124V 0.32 tolerated(0.09) benign(0.209) TCGA-KK-A59V-01 1 37316002 37316002 G A GRIK3 Silent p.D412D 0.40 TCGA-KK-A59V-01 1 39788607 39788607 C T MACF1 Missense_Mutation p.T1393M 0.04 probably_damaging(0.991) TCGA-KK-A59V-01 1 39906934 39906935 AG - MACF1 Frame_Shift_Del p.R4146Afs*5 0.20 TCGA-KK-A59V-01 1 42880409 42880409 C A RIMKLA Missense_Mutation p.L314I 0.20 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-KK-A59V-01 1 43772910 43772910 C - TIE1 Frame_Shift_Del p.P248Lfs*117 0.23 TCGA-KK-A59V-01 1 44156708 44156708 C T KDM4A Missense_Mutation p.R744W 0.28 deleterious(0.03) possibly_damaging(0.684) TCGA-KK-A59V-01 1 45270998 45270998 T C PLK3 Missense_Mutation p.W566R 0.24 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 1 45295123 45295123 G A PTCH2 Missense_Mutation p.A389V 0.31 deleterious(0.02) benign(0.018) TCGA-KK-A59V-01 1 46972679 46972679 C T DMBX1 5'UTR 0.20 TCGA-KK-A59V-01 1 4772604 4772604 C T AJAP1 Missense_Mutation p.T225M 0.32 deleterious(0.01) benign(0.341) TCGA-KK-A59V-01 1 53681698 53681698 C T C1orf123 Missense_Mutation p.G124R 0.27 tolerated(0.09) benign(0.042) TCGA-KK-A59V-01 1 56977736 56977736 G A PPAP2B Missense_Mutation p.T241M 0.27 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 1 57173319 57173319 G A PRKAA2 Missense_Mutation p.R531H 0.22 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-KK-A59V-01 1 6181216 6181216 G A CHD5 Missense_Mutation p.R1621W 0.22 deleterious_low_confidence(0.01) benign(0.409) TCGA-KK-A59V-01 1 6285255 6285255 C T ICMT Missense_Mutation p.R247Q 0.20 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 1 6314755 6314755 G A GPR153 Missense_Mutation p.R71W 0.32 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 1 64698334 64698334 T C UBE2U Splice_Site p.X199_splice 0.21 TCGA-KK-A59V-01 1 75038828 75038829 - C C1orf173 Frame_Shift_Ins p.S856Vfs*17 0.10 TCGA-KK-A59V-01 1 82408815 82408817 CTT - LPHN2 In_Frame_Del p.S188del 0.33 TCGA-KK-A59V-01 1 85431281 85431281 G A MCOLN2 Missense_Mutation p.P63L 0.35 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 1 87041173 87041173 C T CLCA4 Silent p.Y614Y 0.25 TCGA-KK-A59V-01 1 90180448 90180448 C T LRRC8C Silent p.D773D 0.21 TCGA-KK-A59V-01 1 90400076 90400076 C T LRRC8D Silent p.P483P 0.27 TCGA-KK-A59V-01 1 9324290 9324290 C T H6PD Missense_Mutation p.R580W 0.31 deleterious(0) possibly_damaging(0.846) TCGA-KK-A59V-01 1 989313 989313 C A AGRN Silent p.T1944T 0.47 TCGA-KK-A59V-01 20 1106142 1106142 C T PSMF1 Missense_Mutation p.P44L 0.27 deleterious(0.02) benign(0.014) TCGA-KK-A59V-01 20 16359636 16359636 G A KIF16B Missense_Mutation p.A1004V 0.31 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-KK-A59V-01 20 16360535 16360535 G A KIF16B Silent p.R704R 0.09 TCGA-KK-A59V-01 20 20232315 20232315 G A C20orf26 Missense_Mutation p.G746S 0.29 tolerated(0.2) benign(0.061) TCGA-KK-A59V-01 20 23966372 23966372 C T GGTLC1 Missense_Mutation p.V155M 0.09 deleterious(0) possibly_damaging(0.7) TCGA-KK-A59V-01 20 25472047 25472047 G A NINL Silent p.D475D 0.33 TCGA-KK-A59V-01 20 2796319 2796319 C T C20orf141 Silent p.D132D 0.28 TCGA-KK-A59V-01 20 31369195 31369195 T C DNMT3B Missense_Mutation p.V60A 0.06 tolerated_low_confidence(0.1) probably_damaging(0.974) TCGA-KK-A59V-01 20 31619501 31619501 G A BPIFB6 Silent p.T16T 0.37 TCGA-KK-A59V-01 20 33451235 33451235 C T GGT7 Missense_Mutation p.A96T 0.33 deleterious(0.03) benign(0.084) TCGA-KK-A59V-01 20 33577720 33577720 G A MYH7B Missense_Mutation p.V631M 0.31 probably_damaging(0.959) TCGA-KK-A59V-01 20 34262435 34262435 G A NFS1 Silent p.P351P 0.23 TCGA-KK-A59V-01 20 35176565 35176565 C T MYL9 Silent p.N105N 0.22 TCGA-KK-A59V-01 20 3677446 3677446 G - SIGLEC1 Frame_Shift_Del p.L824Wfs*36 0.28 TCGA-KK-A59V-01 20 36841555 36841555 G - KIAA1755 Frame_Shift_Del p.R1165Gfs*38 0.26 TCGA-KK-A59V-01 20 3686643 3686643 C T SIGLEC1 Missense_Mutation p.E152K 0.31 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 20 39796522 39796522 C T PLCG1 Missense_Mutation p.R778C 0.21 deleterious(0.02) probably_damaging(0.972) TCGA-KK-A59V-01 20 4163076 4163076 G A SMOX Missense_Mutation p.C317Y 0.23 deleterious(0) probably_damaging(0.994) TCGA-KK-A59V-01 20 42788369 42788369 C T JPH2 Missense_Mutation p.R353H 0.08 tolerated(0.08) possibly_damaging(0.893) TCGA-KK-A59V-01 20 43623811 43623811 C A STK4 Missense_Mutation p.N202K 0.31 deleterious(0.03) possibly_damaging(0.826) TCGA-KK-A59V-01 20 45633591 45633591 C T EYA2 Missense_Mutation p.R56C 0.17 deleterious(0.02) benign(0.008) TCGA-KK-A59V-01 20 49195732 49195732 G A PTPN1 Missense_Mutation p.V244I 0.21 tolerated(0.27) benign(0.084) TCGA-KK-A59V-01 20 50235572 50235572 C T ATP9A Missense_Mutation p.R709H 0.31 deleterious(0.02) probably_damaging(0.973) TCGA-KK-A59V-01 20 50408260 50408260 G A SALL4 Silent p.A254A 0.30 TCGA-KK-A59V-01 20 55758849 55758849 C T BMP7 Missense_Mutation p.S296N 0.20 tolerated(0.48) benign(0) TCGA-KK-A59V-01 20 57768008 57768008 C T ZNF831 Missense_Mutation p.A645V 0.29 tolerated(0.15) benign(0.013) TCGA-KK-A59V-01 20 61039787 61039787 G - GATA5 3'UTR 0.17 TCGA-KK-A59V-01 20 61510982 61510982 G A DIDO1 Missense_Mutation p.A2109V 0.28 benign(0.003) TCGA-KK-A59V-01 20 62607080 62607080 C T SAMD10 Missense_Mutation p.R184H 0.34 deleterious(0.04) possibly_damaging(0.868) TCGA-KK-A59V-01 20 8678365 8678365 C T PLCB1 Missense_Mutation p.R368W 0.32 deleterious(0) probably_damaging(0.964) TCGA-KK-A59V-01 21 31692135 31692135 G A KRTAP26-1 Silent p.T73T 0.30 TCGA-KK-A59V-01 21 35743007 35743007 G A KCNE2 Missense_Mutation p.R77Q 0.26 tolerated(0.37) benign(0.043) TCGA-KK-A59V-01 21 38460555 38460555 G A TTC3 Missense_Mutation p.D83N 0.35 tolerated(0.45) benign(0.194) TCGA-KK-A59V-01 21 40193595 40193595 C T ETS2 Silent p.D387D 0.31 TCGA-KK-A59V-01 21 40571323 40571324 - T BRWD1 Frame_Shift_Ins p.L1674Vfs*4 0.10 TCGA-KK-A59V-01 21 43504322 43504322 G - UMODL1 Frame_Shift_Del p.R152Afs*26 0.21 TCGA-KK-A59V-01 21 43693446 43693446 C T ABCG1 Silent p.N146N 0.04 TCGA-KK-A59V-01 21 45802622 45802622 C T TRPM2 Missense_Mutation p.R413W 0.36 deleterious(0.01) benign(0.046) TCGA-KK-A59V-01 21 46233779 46233779 C T SUMO3 Intron 0.22 TCGA-KK-A59V-01 21 46323417 46323417 C T ITGB2 Missense_Mutation p.R121Q 0.23 deleterious(0) probably_damaging(0.971) TCGA-KK-A59V-01 21 47860054 47860054 G A PCNT Missense_Mutation p.R3111H 0.29 benign(0.074) TCGA-KK-A59V-01 22 17590304 17590304 C - IL17RA Frame_Shift_Del p.M734Wfs*11 0.17 TCGA-KK-A59V-01 22 19197976 19197976 G T CLTCL1 Missense_Mutation p.R1037S 0.20 tolerated(0.2) benign(0.016) TCGA-KK-A59V-01 22 20936976 20936976 C - MED15 Frame_Shift_Del p.Q453Sfs*41 0.25 TCGA-KK-A59V-01 22 21330573 21330573 C T AIFM3 Silent p.L293L 0.22 TCGA-KK-A59V-01 22 24459593 24459593 G A CABIN1 Missense_Mutation p.R623H 0.31 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 22 24807598 24807598 C T SPECC1L Silent p.L1044L 0.10 TCGA-KK-A59V-01 22 24891333 24891333 C T UPB1 5'UTR 0.09 TCGA-KK-A59V-01 22 30977346 30977346 G A PES1 Missense_Mutation p.A266V 0.32 tolerated(0.31) probably_damaging(0.989) TCGA-KK-A59V-01 22 31059579 31059579 G A DUSP18 Missense_Mutation p.R138W 0.26 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 22 32200866 32200866 C T DEPDC5 Silent p.G394G 0.09 TCGA-KK-A59V-01 22 32234677 32234677 C T DEPDC5 Silent p.D778D 0.30 TCGA-KK-A59V-01 22 32500781 32500781 T C SLC5A1 Silent p.R558R 0.23 TCGA-KK-A59V-01 22 37211239 37211239 G A PVALB Silent p.V34V 0.26 TCGA-KK-A59V-01 22 37962592 37962592 G A CDC42EP1 Missense_Mutation p.R79H 0.35 deleterious(0.03) possibly_damaging(0.698) TCGA-KK-A59V-01 22 38046479 38046479 C T SH3BP1 Intron 0.19 TCGA-KK-A59V-01 22 38211829 38211829 C T GCAT Missense_Mutation p.A351V 0.21 tolerated(0.18) benign(0.081) TCGA-KK-A59V-01 22 39883622 39883622 C A MGAT3 Silent p.A90A 0.04 TCGA-KK-A59V-01 22 39909961 39909961 G A MIEF1 Missense_Mutation p.R342H 0.31 deleterious(0.04) benign(0.391) TCGA-KK-A59V-01 22 41573944 41573944 A G EP300 Missense_Mutation p.N2077D 0.08 probably_damaging(0.973) TCGA-KK-A59V-01 22 41863582 41863582 C T PHF5A Missense_Mutation p.R38H 0.28 tolerated(0.06) benign(0.022) TCGA-KK-A59V-01 22 43089741 43089741 C T A4GALT Missense_Mutation p.G73S 0.24 tolerated(0.43) benign(0.001) TCGA-KK-A59V-01 22 43568521 43568521 G A TTLL12 Nonsense_Mutation p.R461* 0.16 TCGA-KK-A59V-01 22 43687179 43687179 G A SCUBE1 Silent p.D119D 0.10 TCGA-KK-A59V-01 22 45740517 45740517 G A SMC1B Nonsense_Mutation p.R1210* 0.32 TCGA-KK-A59V-01 22 46614283 46614283 G A PPARA Missense_Mutation p.G165R 0.26 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 22 50502485 50502485 G A MLC1 Missense_Mutation p.P346L 0.14 tolerated_low_confidence(0.08) benign(0.004) TCGA-KK-A59V-01 22 50873400 50873400 C T PPP6R2 Missense_Mutation p.A470V 0.22 tolerated(0.09) possibly_damaging(0.723) TCGA-KK-A59V-01 2 105859517 105859517 T C GPR45 3'UTR 0.17 TCGA-KK-A59V-01 2 108626820 108626820 G A SLC5A7 Missense_Mutation p.V416I 0.24 tolerated(1) benign(0.004) TCGA-KK-A59V-01 2 109388168 109388168 A - RANBP2 Frame_Shift_Del p.K2622Nfs*17 0.23 TCGA-KK-A59V-01 2 130949671 130949671 C T TUBA3E Silent p.V362V 0.29 TCGA-KK-A59V-01 2 130951457 130951457 T - TUBA3E Frame_Shift_Del p.R320Gfs*59 0.26 TCGA-KK-A59V-01 2 131520231 131520231 C T AMER3 Missense_Mutation p.R196W 0.29 deleterious(0) probably_damaging(0.91) TCGA-KK-A59V-01 2 141115624 141115624 T - LRP1B Frame_Shift_Del p.K3773Nfs*26 0.10 TCGA-KK-A59V-01 2 141356218 141356218 G A LRP1B Silent p.Y2392Y 0.13 TCGA-KK-A59V-01 2 149853788 149853788 C T KIF5C Silent p.H678H 0.27 TCGA-KK-A59V-01 2 152387573 152387573 A C NEB Missense_Mutation p.Y7189D 0.29 probably_damaging(0.995) TCGA-KK-A59V-01 2 152484040 152484040 G A NEB Silent p.S3380S 0.04 TCGA-KK-A59V-01 2 15372633 15372633 C A NBAS Missense_Mutation p.G2050V 0.23 deleterious(0.01) probably_damaging(0.983) TCGA-KK-A59V-01 2 155711423 155711423 G A KCNJ3 Silent p.S368S 0.25 TCGA-KK-A59V-01 2 157186312 157186312 C T NR4A2 Silent p.T129T 0.27 TCGA-KK-A59V-01 2 160994350 160994350 C T ITGB6 Missense_Mutation p.V419M 0.27 deleterious(0.04) benign(0.265) TCGA-KK-A59V-01 2 1652754 1652754 C T PXDN Missense_Mutation p.R933H 0.24 tolerated(0.08) benign(0.168) TCGA-KK-A59V-01 2 165476321 165476321 T - GRB14 Frame_Shift_Del p.K67Rfs*43 0.18 TCGA-KK-A59V-01 2 166894441 166894441 G A SCN1A Missense_Mutation p.R931C 0.28 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 2 168067347 168067347 G A XIRP2 Missense_Mutation p.R222Q 0.27 probably_damaging(1) TCGA-KK-A59V-01 2 170099968 170099968 C T LRP2 Silent p.S1165S 0.20 TCGA-KK-A59V-01 2 170938436 170938436 A G UBR3 3'UTR 0.48 TCGA-KK-A59V-01 2 176983939 176983939 G A HOXD10 Missense_Mutation p.A335T 0.28 tolerated(0.15) possibly_damaging(0.845) TCGA-KK-A59V-01 2 177037092 177037092 C - HOXD3 3'UTR 0.35 TCGA-KK-A59V-01 2 179399405 179399406 - G TTN Frame_Shift_Ins p.E33980Rfs*6 0.09 TCGA-KK-A59V-01 2 179401235 179401235 C A TTN Missense_Mutation p.W33413C 0.07 TCGA-KK-A59V-01 2 179447832 179447833 - T TTN Frame_Shift_Ins p.D21900Rfs*40 0.22 TCGA-KK-A59V-01 2 179501179 179501179 C T TTN Missense_Mutation p.V13759I 0.10 TCGA-KK-A59V-01 2 179638572 179638573 AG - TTN Frame_Shift_Del p.S2441Cfs*3 0.20 TCGA-KK-A59V-01 2 183582840 183582840 C A DNAJC10 Missense_Mutation p.D9E 0.27 deleterious_low_confidence(0.04) benign(0.002) TCGA-KK-A59V-01 2 187521085 187521085 G - ITGAV Frame_Shift_Del p.G561Dfs*2 0.25 TCGA-KK-A59V-01 2 1926367 1926367 G - MYT1L Frame_Shift_Del p.R392Gfs*24 0.20 TCGA-KK-A59V-01 2 201324531 201324531 T C SPATS2L Silent p.D276D 0.17 TCGA-KK-A59V-01 2 201337651 201337651 A G SPATS2L Missense_Mutation p.N386S 0.20 tolerated(0.67) benign(0.001) TCGA-KK-A59V-01 2 202245769 202245769 G A TRAK2 Nonsense_Mutation p.R748* 0.24 TCGA-KK-A59V-01 2 204801510 204801510 C T ICOS 5'UTR 0.25 TCGA-KK-A59V-01 2 20511377 20511377 T - PUM2 Frame_Shift_Del p.G133Afs*24 0.27 TCGA-KK-A59V-01 2 207025333 207025333 T C EEF1B2 Silent p.D34D 0.23 TCGA-KK-A59V-01 2 219494309 219494309 G A PLCD4 Missense_Mutation p.V348I 0.23 tolerated(0.99) probably_damaging(0.986) TCGA-KK-A59V-01 2 219525928 219525928 G A BCS1L Missense_Mutation p.R73H 0.03 tolerated(0.16) benign(0.003) TCGA-KK-A59V-01 2 219736335 219736335 C T WNT6 Missense_Mutation p.R144W 0.22 deleterious(0.01) possibly_damaging(0.733) TCGA-KK-A59V-01 2 219868892 219868893 CT - CCDC108 Frame_Shift_Del p.E1779Gfs*25 0.20 TCGA-KK-A59V-01 2 220399917 220399917 G A ASIC4 Missense_Mutation p.G475D 0.27 tolerated(1) benign(0.014) TCGA-KK-A59V-01 2 223489482 223489482 G A FARSB Nonsense_Mutation p.R305* 0.42 TCGA-KK-A59V-01 2 224849604 224849604 C T SERPINE2 Missense_Mutation p.S262N 0.22 tolerated(0.08) benign(0.06) TCGA-KK-A59V-01 2 231742222 231742222 C T ITM2C Silent p.N223N 0.25 TCGA-KK-A59V-01 2 231927025 231927025 G A PSMD1 Missense_Mutation p.V42I 0.35 tolerated(0.95) benign(0.005) TCGA-KK-A59V-01 2 232389804 232389804 G - NMUR1 Frame_Shift_Del p.L411Wfs*55 0.12 TCGA-KK-A59V-01 2 233621023 233621023 C T GIGYF2 Nonsense_Mutation p.R120* 0.22 TCGA-KK-A59V-01 2 233990478 233990478 G A INPP5D Missense_Mutation p.E125K 0.18 tolerated(0.45) possibly_damaging(0.652) TCGA-KK-A59V-01 2 241401916 241401916 C T GPC1 Missense_Mutation p.R212W 0.32 deleterious(0) probably_damaging(0.967) TCGA-KK-A59V-01 2 241402907 241402907 C T GPC1 Silent p.D287D 0.28 TCGA-KK-A59V-01 2 241569781 241569781 G A GPR35 Missense_Mutation p.A169T 0.06 tolerated(0.1) benign(0.052) TCGA-KK-A59V-01 2 241737144 241737144 G A KIF1A Missense_Mutation p.A9V 0.19 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 2 24262246 24262246 C T C2orf44 Missense_Mutation p.R40Q 0.20 tolerated(0.83) benign(0.001) TCGA-KK-A59V-01 2 26689975 26689975 G A OTOF Missense_Mutation p.R1452C 0.27 deleterious(0.02) probably_damaging(0.915) TCGA-KK-A59V-01 2 26741909 26741909 G A OTOF Missense_Mutation p.T99M 0.40 deleterious(0.03) benign(0.045) TCGA-KK-A59V-01 2 27658073 27658073 G A NRBP1 Missense_Mutation p.G214R 0.08 deleterious(0) probably_damaging(0.987) TCGA-KK-A59V-01 2 27688651 27688651 G A IFT172 Silent p.I597I 0.32 TCGA-KK-A59V-01 2 44100941 44100941 C T ABCG8 Silent p.N409N 0.35 TCGA-KK-A59V-01 2 54876764 54876764 C T SPTBN1 Nonsense_Mutation p.R1739* 0.17 TCGA-KK-A59V-01 2 61175177 61175177 C T PUS10 Splice_Site p.X484_splice 0.21 TCGA-KK-A59V-01 2 71187196 71187196 C - ATP6V1B1 Frame_Shift_Del p.H193Tfs*15 0.26 TCGA-KK-A59V-01 2 73316367 73316367 G A RAB11FIP5 Missense_Mutation p.R170C 0.04 deleterious(0.02) probably_damaging(0.964) TCGA-KK-A59V-01 2 73677817 73677817 C T ALMS1 Missense_Mutation p.P1387L 0.28 probably_damaging(0.959) TCGA-KK-A59V-01 2 74605228 74605228 C T DCTN1 Missense_Mutation p.V60M 0.22 deleterious(0) probably_damaging(0.976) TCGA-KK-A59V-01 2 75745250 75745250 C T EVA1A Missense_Mutation p.S6N 0.16 tolerated(0.59) benign(0.001) TCGA-KK-A59V-01 2 79384321 79384321 C T REG3A 3'UTR 0.25 TCGA-KK-A59V-01 2 87240173 87240173 C T RGPD1 3'UTR 0.28 TCGA-KK-A59V-01 2 90044403 90044403 C T IGKV2D-24 Silent p.V108V 0.06 TCGA-KK-A59V-01 2 90139530 90139530 C T IGKV1D-16 Nonsense_Mutation p.Q101* 0.32 TCGA-KK-A59V-01 2 9528611 9528611 C T ASAP2 Silent p.P773P 0.23 TCGA-KK-A59V-01 2 96957583 96957583 C T SNRNP200 Missense_Mutation p.R739Q 0.20 deleterious(0.01) probably_damaging(0.953) TCGA-KK-A59V-01 2 97464908 97464908 G A CNNM4 Missense_Mutation p.R599H 0.38 tolerated(0.44) benign(0.001) TCGA-KK-A59V-01 2 97527616 97527616 C T SEMA4C Missense_Mutation p.G487S 0.16 tolerated(0.11) probably_damaging(1) TCGA-KK-A59V-01 3 101284918 101284918 G A TRMT10C 3'UTR 0.25 TCGA-KK-A59V-01 3 101484459 101484459 T - CEP97 3'UTR 0.32 TCGA-KK-A59V-01 3 108391473 108391473 C T DZIP3 Silent p.N853N 0.34 TCGA-KK-A59V-01 3 11067934 11067934 G A SLC6A1 Missense_Mutation p.V323I 0.28 tolerated(0.14) benign(0.355) TCGA-KK-A59V-01 3 111426772 111426772 G T PLCXD2 Splice_Site p.X55_splice 0.16 TCGA-KK-A59V-01 3 111927206 111927206 C T SLC9C1 Missense_Mutation p.R602H 0.07 tolerated(0.49) benign(0.002) TCGA-KK-A59V-01 3 113184565 113184565 G A SPICE1 Nonsense_Mutation p.R408* 0.25 TCGA-KK-A59V-01 3 114070734 114070734 T C ZBTB20 Intron 0.31 TCGA-KK-A59V-01 3 119900063 119900063 A G GPR156 Missense_Mutation p.L281S 0.08 deleterious(0.05) probably_damaging(1) TCGA-KK-A59V-01 3 122002728 122002728 G A CASR Missense_Mutation p.V653I 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-KK-A59V-01 3 122811251 122811251 G A PDIA5 Silent p.A73A 0.34 TCGA-KK-A59V-01 3 123419105 123419105 G A MYLK Silent p.D1070D 0.27 TCGA-KK-A59V-01 3 124739857 124739857 C T HEG1 Missense_Mutation p.R344Q 0.14 tolerated(1) benign(0.004) TCGA-KK-A59V-01 3 126723743 126723743 C T PLXNA1 Silent p.D545D 0.16 TCGA-KK-A59V-01 3 127336184 127336184 G A MCM2 Silent p.S612S 0.18 TCGA-KK-A59V-01 3 127396381 127396381 C T ABTB1 Missense_Mutation p.A279V 0.22 tolerated(0.14) benign(0.102) TCGA-KK-A59V-01 3 127399182 127399182 C T ABTB1 Missense_Mutation p.T434M 0.11 tolerated(0.06) possibly_damaging(0.581) TCGA-KK-A59V-01 3 128182162 128182162 C T DNAJB8 5'UTR 0.29 TCGA-KK-A59V-01 3 12856694 12856694 C T CAND2 Missense_Mutation p.A354V 0.26 deleterious(0) possibly_damaging(0.818) TCGA-KK-A59V-01 3 129275464 129275464 G A PLXND1 Missense_Mutation p.P1886L 0.23 tolerated(0.07) benign(0.067) TCGA-KK-A59V-01 3 12977620 12977620 G A IQSEC1 Missense_Mutation p.S313L 0.32 deleterious_low_confidence(0) benign(0.368) TCGA-KK-A59V-01 3 131208896 131208896 C T MRPL3 Missense_Mutation p.R166Q 0.30 tolerated(0.32) benign(0.029) TCGA-KK-A59V-01 3 149678734 149678734 G A RNF13 Missense_Mutation p.R330H 0.32 tolerated(0.77) benign(0) TCGA-KK-A59V-01 3 154032977 154032978 - T DHX36 Frame_Shift_Ins p.M154Nfs*3 0.28 TCGA-KK-A59V-01 3 15493126 15493126 G A COLQ 3'UTR 0.31 TCGA-KK-A59V-01 3 155649577 155649577 C T GMPS Silent p.Y528Y 0.24 TCGA-KK-A59V-01 3 171431771 171431771 C T PLD1 Missense_Mutation p.V275I 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-KK-A59V-01 3 17448086 17448086 C T TBC1D5 Intron 0.24 TCGA-KK-A59V-01 3 179131318 179131318 G T GNB4 Missense_Mutation p.P194H 0.29 deleterious(0) probably_damaging(0.924) TCGA-KK-A59V-01 3 184099097 184099097 G A CHRD Silent p.P109P 0.12 TCGA-KK-A59V-01 3 184294936 184294936 G A EPHB3 Missense_Mutation p.R440H 0.33 tolerated(0.09) benign(0.002) TCGA-KK-A59V-01 3 187416696 187416696 G A RTP2 Missense_Mutation p.R90C 0.08 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 3 192973512 192973512 C T HRASLS Missense_Mutation p.R130C 0.30 deleterious(0.01) probably_damaging(1) TCGA-KK-A59V-01 3 193377284 193377284 T C OPA1 Silent p.I800I 0.31 TCGA-KK-A59V-01 3 195516082 195516082 G A MUC4 Missense_Mutation p.P790L 0.24 unknown(0) TCGA-KK-A59V-01 3 38755531 38755531 G T SCN10A Missense_Mutation p.S1241Y 0.05 deleterious(0) probably_damaging(0.964) TCGA-KK-A59V-01 3 39139663 39139663 G A GORASP1 3'UTR 0.24 TCGA-KK-A59V-01 3 39373861 39373861 C T CCR8 Silent p.T13T 0.27 TCGA-KK-A59V-01 3 42572369 42572369 C T VIPR1 Silent p.A245A 0.08 TCGA-KK-A59V-01 3 47385480 47385480 G A KLHL18 3'UTR 0.33 TCGA-KK-A59V-01 3 47882577 47882577 G A DHX30 Missense_Mutation p.E193K 0.20 tolerated(0.87) benign(0.365) TCGA-KK-A59V-01 3 48559455 48559455 G A PFKFB4 Silent p.N438N 0.21 TCGA-KK-A59V-01 3 48612871 48612871 G - COL7A1 Frame_Shift_Del p.P2029Lfs*177 0.29 TCGA-KK-A59V-01 3 48612934 48612935 - C COL7A1 Frame_Shift_Ins p.D2007Rfs*92 0.19 TCGA-KK-A59V-01 3 48670955 48670955 C T SLC26A6 Missense_Mutation p.R46H 0.30 tolerated(0.63) benign(0.001) TCGA-KK-A59V-01 3 48719968 48719968 C T NCKIPSD Missense_Mutation p.R100Q 0.28 deleterious(0) probably_damaging(0.984) TCGA-KK-A59V-01 3 49712736 49712736 G - APEH Frame_Shift_Del p.E91Nfs*3 0.22 TCGA-KK-A59V-01 3 49756813 49756814 - G AMIGO3 Frame_Shift_Ins p.R29Pfs*91 0.19 TCGA-KK-A59V-01 3 50367973 50367973 G A RASSF1 3'UTR 0.29 TCGA-KK-A59V-01 3 51378749 51378749 C T DOCK3 Missense_Mutation p.S1283L 0.32 tolerated(0.27) benign(0.085) TCGA-KK-A59V-01 3 51993254 51993254 C T PCBP4 Missense_Mutation p.V231M 0.24 tolerated(0.34) benign(0.014) TCGA-KK-A59V-01 3 53785896 53785896 G A CACNA1D Missense_Mutation p.V1233I 0.07 tolerated(0.19) benign(0.084) TCGA-KK-A59V-01 3 53834368 53834370 AGA - CACNA1D In_Frame_Del p.E1695del 0.22 TCGA-KK-A59V-01 3 58108882 58108882 C T FLNB Silent p.I1063I 0.26 TCGA-KK-A59V-01 3 62385086 62385086 C T CADPS Missense_Mutation p.D1353N 0.30 deleterious_low_confidence(0) unknown(0) TCGA-KK-A59V-01 3 62451122 62451122 C T CADPS Missense_Mutation p.V1186I 0.30 tolerated(0.29) benign(0.004) TCGA-KK-A59V-01 3 75476776 75476776 G - FAM86DP RNA 0.38 TCGA-KK-A59V-01 3 8543572 8543572 C T LMCD1 5'UTR 0.21 TCGA-KK-A59V-01 3 99514755 99514755 G - COL8A1 Frame_Shift_Del p.G672Afs*14 0.14 TCGA-KK-A59V-01 3 99569644 99569644 C A FILIP1L Missense_Mutation p.E292D 0.26 deleterious(0.01) possibly_damaging(0.491) TCGA-KK-A59V-01 4 100134802 100134802 C T ADH6 Missense_Mutation p.V75I 0.25 deleterious(0.03) benign(0.304) TCGA-KK-A59V-01 4 102946626 102946626 T C BANK1 Silent p.A518A 0.18 TCGA-KK-A59V-01 4 10445201 10445202 - A ZNF518B Frame_Shift_Ins p.Q918Sfs*12 0.09 TCGA-KK-A59V-01 4 1067393 1067393 G A RNF212 Nonsense_Mutation p.R190* 0.27 TCGA-KK-A59V-01 4 119979079 119979079 G A SYNPO2 Missense_Mutation p.R1259H 0.23 tolerated(0.14) benign(0.087) TCGA-KK-A59V-01 4 123260496 123260497 TT - KIAA1109 Frame_Shift_Del p.L4096Ifs*5 0.20 TCGA-KK-A59V-01 4 126373019 126373019 G A FAT4 Silent p.T3616T 0.06 TCGA-KK-A59V-01 4 1347003 1347003 C T UVSSA Missense_Mutation p.R246W 0.36 deleterious(0.04) benign(0) TCGA-KK-A59V-01 4 145038028 145038028 G A GYPA Silent p.Y112Y 0.29 TCGA-KK-A59V-01 4 151000106 151000106 A G DCLK2 5'Flank 0.38 TCGA-KK-A59V-01 4 162680660 162680660 G A FSTL5 Silent p.G210G 0.27 TCGA-KK-A59V-01 4 165962457 165962457 A G TRIM60 Silent p.K411K 0.25 TCGA-KK-A59V-01 4 185697797 185697797 A - ACSL1 Frame_Shift_Del p.F199Lfs*12 0.28 TCGA-KK-A59V-01 4 186423412 186423412 G T PDLIM3 3'UTR 0.21 TCGA-KK-A59V-01 4 187130278 187130278 C T CYP4V2 Silent p.A419A 0.05 TCGA-KK-A59V-01 4 1991465 1991465 C T NELFA Missense_Mutation p.A183T 0.24 deleterious(0) possibly_damaging(0.63) TCGA-KK-A59V-01 4 2129906 2129906 G A POLN Missense_Mutation p.P639L 0.19 deleterious(0) probably_damaging(0.971) TCGA-KK-A59V-01 4 30723339 30723339 T A PCDH7 Missense_Mutation p.C99S 0.37 deleterious(0) possibly_damaging(0.908) TCGA-KK-A59V-01 4 3449905 3449905 G A HGFAC Missense_Mutation p.A563T 0.50 deleterious(0.03) benign(0.251) TCGA-KK-A59V-01 4 37831682 37831682 G A PGM2 Missense_Mutation p.A60T 0.31 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 4 39878622 39878623 - G PDS5A Frame_Shift_Ins p.Q715Pfs*36 0.22 TCGA-KK-A59V-01 4 40946968 40946968 G A APBB2 Missense_Mutation p.R320W 0.21 deleterious(0.02) probably_damaging(0.975) TCGA-KK-A59V-01 4 41608016 41608016 C T LIMCH1 Nonsense_Mutation p.R161* 0.32 TCGA-KK-A59V-01 4 55140716 55140716 C T PDGFRA Missense_Mutation p.T526M 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-KK-A59V-01 4 55984794 55984794 G A KDR Missense_Mutation p.S112L 0.11 deleterious(0.01) benign(0.047) TCGA-KK-A59V-01 4 57777468 57777468 G A REST Missense_Mutation p.G222S 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-KK-A59V-01 4 68610374 68610374 G T GNRHR Nonsense_Mutation p.C218* 0.30 TCGA-KK-A59V-01 4 68610375 68610375 C T GNRHR Missense_Mutation p.C218Y 0.30 deleterious(0) possibly_damaging(0.609) TCGA-KK-A59V-01 4 69093621 69093622 - T TMPRSS11B 3'UTR 0.29 TCGA-KK-A59V-01 4 6925751 6925751 G A TBC1D14 Missense_Mutation p.R212H 0.34 tolerated(0.13) benign(0.001) TCGA-KK-A59V-01 4 69795695 69795695 G T UGT2A3 Missense_Mutation p.L474M 0.32 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 4 70146235 70146235 C T UGT2B28 Missense_Mutation p.T6I 0.26 tolerated(1) benign(0.005) TCGA-KK-A59V-01 4 70713451 70713451 G A SULT1E1 Missense_Mutation p.R186C 0.22 tolerated(0.06) possibly_damaging(0.576) TCGA-KK-A59V-01 4 74846961 74846961 G A PF4 Missense_Mutation p.P89L 0.26 deleterious(0.03) benign(0.011) TCGA-KK-A59V-01 4 76521466 76521466 G T CDKL2 Missense_Mutation p.P461T 0.17 tolerated_low_confidence(0.05) benign(0.082) TCGA-KK-A59V-01 4 79396694 79396694 C T FRAS1 Silent p.T2595T 0.24 TCGA-KK-A59V-01 4 876523 876523 G A GAK Missense_Mutation p.R497W 0.08 deleterious(0) possibly_damaging(0.884) TCGA-KK-A59V-01 4 87967875 87967875 G A AFF1 Missense_Mutation p.R63Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 4 89577167 89577167 C T HERC3 Silent p.G350G 0.11 TCGA-KK-A59V-01 5 10227710 10227710 C T FAM173B Missense_Mutation p.R182Q 0.27 tolerated(0.14) possibly_damaging(0.846) TCGA-KK-A59V-01 5 10290659 10290659 C T CMBL Splice_Site p.X72_splice 0.32 TCGA-KK-A59V-01 5 11082852 11082852 G A CTNND2 Missense_Mutation p.A915V 0.22 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 5 112327915 112327915 T C DCP2 Silent p.G101G 0.22 TCGA-KK-A59V-01 5 114610974 114610974 T C CCDC112 Missense_Mutation p.E286G 0.14 deleterious(0.01) possibly_damaging(0.69) TCGA-KK-A59V-01 5 118969736 118969736 G A FAM170A Missense_Mutation p.R98H 0.24 tolerated(0.49) benign(0.002) TCGA-KK-A59V-01 5 121188336 121188336 G A FTMT Silent p.A226A 0.25 TCGA-KK-A59V-01 5 131325195 131325195 C T ACSL6 Missense_Mutation p.D153N 0.06 tolerated(0.12) benign(0.005) TCGA-KK-A59V-01 5 134118636 134118636 G T DDX46 Missense_Mutation p.E349D 0.12 tolerated(0.09) benign(0.02) TCGA-KK-A59V-01 5 135382150 135382150 C - TGFBI Frame_Shift_Del p.P143Lfs*39 0.39 TCGA-KK-A59V-01 5 137206474 137206474 G A MYOT Missense_Mutation p.R45H 0.34 tolerated(0.16) benign(0.006) TCGA-KK-A59V-01 5 137777145 137777147 CTC - REEP2 In_Frame_Del p.S60del 0.23 TCGA-KK-A59V-01 5 137802682 137802682 G A EGR1 Missense_Mutation p.A182T 0.13 tolerated(0.25) benign(0.078) TCGA-KK-A59V-01 5 139260510 139260510 C - NRG2 Frame_Shift_Del p.E308Sfs*24 0.10 TCGA-KK-A59V-01 5 140182290 140182290 C T PCDHA3 Missense_Mutation p.A503V 0.28 deleterious_low_confidence(0.02) benign(0.152) TCGA-KK-A59V-01 5 140182315 140182315 C T PCDHA3 Silent p.H511H 0.25 TCGA-KK-A59V-01 5 140229397 140229397 C A PCDHA9 Silent p.A439A 0.28 TCGA-KK-A59V-01 5 140249999 140249999 G A PCDHA11 Silent p.T437T 0.21 TCGA-KK-A59V-01 5 140431763 140431763 C T PCDHB1 Silent p.N236N 0.27 TCGA-KK-A59V-01 5 140503992 140503992 C T PCDHB4 3'UTR 0.13 TCGA-KK-A59V-01 5 140516576 140516576 C T PCDHB5 Silent p.Y520Y 0.05 TCGA-KK-A59V-01 5 140589863 140589863 G A PCDHB12 Missense_Mutation p.E462K 0.05 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-KK-A59V-01 5 140625331 140625331 G A PCDHB15 Missense_Mutation p.R62Q 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.821) TCGA-KK-A59V-01 5 140626377 140626378 AG - PCDHB15 Frame_Shift_Del p.E412Dfs*34 0.31 TCGA-KK-A59V-01 5 140712516 140712516 C T PCDHGA1 Silent p.H755H 0.29 TCGA-KK-A59V-01 5 140750489 140750489 G A PCDHGB3 Silent p.P176P 0.06 TCGA-KK-A59V-01 5 140755586 140755586 G - PCDHGA6 Frame_Shift_Del p.V646Sfs*87 0.33 TCGA-KK-A59V-01 5 140792918 140792918 C T PCDHGA10 Missense_Mutation p.A59V 0.04 deleterious_low_confidence(0) benign(0.194) TCGA-KK-A59V-01 5 140871074 140871074 C T PCDHGC5 Missense_Mutation p.T756M 0.06 deleterious(0.05) probably_damaging(0.997) TCGA-KK-A59V-01 5 14366990 14366990 G A TRIO Missense_Mutation p.G926R 0.19 probably_damaging(1) TCGA-KK-A59V-01 5 1470989 1470989 G A LPCAT1 Silent p.V410V 0.29 TCGA-KK-A59V-01 5 147889133 147889133 C T HTR4 Missense_Mutation p.R321H 0.26 deleterious(0.05) benign(0.035) TCGA-KK-A59V-01 5 148756445 148756445 C T IL17B Silent p.P55P 0.28 TCGA-KK-A59V-01 5 150411861 150411861 C - TNIP1 Frame_Shift_Del p.R621Sfs*33 0.15 TCGA-KK-A59V-01 5 153830731 153830731 C T SAP30L Silent p.D94D 0.24 TCGA-KK-A59V-01 5 156741353 156741353 T C CYFIP2 Missense_Mutation p.V345A 0.10 tolerated(0.28) benign(0.022) TCGA-KK-A59V-01 5 15928442 15928442 G A FBXL7 Missense_Mutation p.V191I 0.24 tolerated(0.43) benign(0.018) TCGA-KK-A59V-01 5 163612 163612 C - PLEKHG4B Frame_Shift_Del p.S788Rfs*19 0.15 TCGA-KK-A59V-01 5 170669733 170669733 C T RANBP17 Silent p.L895L 0.27 TCGA-KK-A59V-01 5 170725811 170725811 G A RANBP17 Silent p.A1072A 0.20 TCGA-KK-A59V-01 5 176011599 176011599 G A CDHR2 Missense_Mutation p.V773I 0.30 tolerated(0.21) benign(0.109) TCGA-KK-A59V-01 5 176638166 176638166 G A NSD1 Silent p.T922T 0.14 TCGA-KK-A59V-01 5 177651532 177651532 G A PHYKPL Missense_Mutation p.R179W 0.28 deleterious(0) probably_damaging(0.978) TCGA-KK-A59V-01 5 178392010 178392010 A - ZNF454 Frame_Shift_Del p.N204Mfs*52 0.16 TCGA-KK-A59V-01 5 2755291 2755291 C T C5orf38 3'UTR 0.37 TCGA-KK-A59V-01 5 31538687 31538687 C T C5orf22 Missense_Mutation p.A233V 0.24 tolerated(0.64) benign(0.005) TCGA-KK-A59V-01 5 32059348 32059348 C T PDZD2 Missense_Mutation p.P735L 0.16 deleterious(0.03) probably_damaging(1) TCGA-KK-A59V-01 5 32263257 32263257 T G MTMR12 Missense_Mutation p.K225N 0.30 deleterious(0) possibly_damaging(0.69) TCGA-KK-A59V-01 5 33459802 33459802 C T TARS Silent p.S395S 0.32 TCGA-KK-A59V-01 5 37064774 37064774 G A NIPBL Missense_Mutation p.S2732N 0.32 tolerated_low_confidence(0.13) benign(0.351) TCGA-KK-A59V-01 5 41313799 41313799 C A PLCXD3 Missense_Mutation p.D296Y 0.29 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 5 5462084 5462084 G A KIAA0947 Silent p.R879R 0.23 TCGA-KK-A59V-01 5 64100133 64100134 - A CWC27 Frame_Shift_Ins p.L289Ifs*10 0.22 TCGA-KK-A59V-01 5 666151 666151 G T TPPP Missense_Mutation p.S133R 0.04 tolerated(0.09) benign(0.122) TCGA-KK-A59V-01 5 71524028 71524028 T C MRPS27 Intron 0.33 TCGA-KK-A59V-01 5 71756273 71756273 C T ZNF366 Missense_Mutation p.E351K 0.20 deleterious(0.04) probably_damaging(0.996) TCGA-KK-A59V-01 5 80548556 80548556 C T CKMT2 Silent p.A65A 0.24 TCGA-KK-A59V-01 5 88119739 88119739 T C MEF2C 5'UTR 0.35 TCGA-KK-A59V-01 5 89689800 89689800 T - CETN3 3'UTR 0.27 TCGA-KK-A59V-01 5 90368409 90368409 A G GPR98 Missense_Mutation p.T6100A 0.23 possibly_damaging(0.874) TCGA-KK-A59V-01 6 102503424 102503424 A G GRIK2 Missense_Mutation p.Y844C 0.06 deleterious(0) probably_damaging(0.95) TCGA-KK-A59V-01 6 108492739 108492739 G A NR2E1 Missense_Mutation p.G35S 0.26 deleterious(0.01) probably_damaging(1) TCGA-KK-A59V-01 6 110636575 110636575 C T METTL24 Missense_Mutation p.R176H 0.04 tolerated(0.14) benign(0.007) TCGA-KK-A59V-01 6 11185821 11185821 T C NEDD9 Silent p.L693L 0.05 TCGA-KK-A59V-01 6 112493823 112493823 C T LAMA4 Missense_Mutation p.R514Q 0.28 tolerated(1) benign(0.015) TCGA-KK-A59V-01 6 123319048 123319048 G A CLVS2 Silent p.P42P 0.27 TCGA-KK-A59V-01 6 126080681 126080681 C T HEY2 Silent p.C249C 0.27 TCGA-KK-A59V-01 6 127775146 127775146 G A SOGA3 3'UTR 0.07 TCGA-KK-A59V-01 6 128388750 128388750 G A PTPRK Missense_Mutation p.R691W 0.25 deleterious(0) possibly_damaging(0.859) TCGA-KK-A59V-01 6 133849985 133849985 A G EYA4 3'UTR 0.20 TCGA-KK-A59V-01 6 136913360 136913360 G A MAP3K5 Missense_Mutation p.T1059M 0.31 tolerated(0.1) possibly_damaging(0.727) TCGA-KK-A59V-01 6 142399950 142399950 G A NMBR Silent p.S171S 0.29 TCGA-KK-A59V-01 6 151671792 151671792 G A AKAP12 Missense_Mutation p.V756I 0.25 tolerated(0.17) probably_damaging(0.999) TCGA-KK-A59V-01 6 154412196 154412196 C T OPRM1 Silent p.T344T 0.20 TCGA-KK-A59V-01 6 160103610 160103610 T - SOD2 Frame_Shift_Del p.N195Mfs*7 0.24 TCGA-KK-A59V-01 6 16143929 16143929 G T MYLIP Splice_Site p.X221_splice 0.07 TCGA-KK-A59V-01 6 167787857 167787858 - G TCP10 Frame_Shift_Ins p.D258Rfs*25 0.11 TCGA-KK-A59V-01 6 17507412 17507412 G A CAP2 Missense_Mutation p.A105T 0.25 tolerated(0.67) benign(0.009) TCGA-KK-A59V-01 6 17507500 17507500 C T CAP2 Missense_Mutation p.S134L 0.18 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 6 20490692 20490692 C T E2F3 3'UTR 0.20 TCGA-KK-A59V-01 6 2124953 2124953 G C GMDS Missense_Mutation p.L39V 0.35 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-KK-A59V-01 6 24357600 24357601 - G KAAG1 5'UTR 0.21 TCGA-KK-A59V-01 6 24473884 24473884 G A GPLD1 Silent p.H151H 0.18 TCGA-KK-A59V-01 6 2685806 2685806 G A MYLK4 Missense_Mutation p.R116C 0.29 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 6 27420591 27420591 G T ZNF184 Silent p.P249P 0.28 TCGA-KK-A59V-01 6 29364665 29364665 C A OR12D2 Missense_Mutation p.N63K 0.27 deleterious(0) benign(0.112) TCGA-KK-A59V-01 6 30670918 30670918 C T MDC1 Missense_Mutation p.R1943Q 0.07 deleterious(0.03) probably_damaging(0.962) TCGA-KK-A59V-01 6 30673764 30673764 G - MDC1 Frame_Shift_Del p.L1066Ffs*50 0.20 TCGA-KK-A59V-01 6 31867788 31867788 C T ZBTB12 Missense_Mutation p.R432Q 0.35 deleterious(0.02) benign(0.238) TCGA-KK-A59V-01 6 31896622 31896622 C T CFB Intron 0.26 TCGA-KK-A59V-01 6 31915745 31915745 G A CFB Missense_Mutation p.V764I 0.29 tolerated(0.09) benign(0.001) TCGA-KK-A59V-01 6 32805336 32805336 T C TAP2 Missense_Mutation p.M196V 0.43 tolerated(0.06) benign(0.241) TCGA-KK-A59V-01 6 33137176 33137176 C T COL11A2 Missense_Mutation p.G1175D 0.17 unknown(0) TCGA-KK-A59V-01 6 33157148 33157148 G A COL11A2 Nonsense_Mutation p.R61* 0.06 TCGA-KK-A59V-01 6 33177832 33177832 G A RING1 Missense_Mutation p.R127H 0.19 deleterious(0.01) benign(0.202) TCGA-KK-A59V-01 6 33235903 33235903 G A VPS52 Missense_Mutation p.T261M 0.30 deleterious(0) benign(0.029) TCGA-KK-A59V-01 6 34824040 34824040 G A UHRF1BP1 Missense_Mutation p.R382H 0.23 tolerated(0.11) benign(0.15) TCGA-KK-A59V-01 6 35200688 35200688 G - SCUBE3 Frame_Shift_Del p.G179Vfs*21 0.20 TCGA-KK-A59V-01 6 36651973 36651973 G A CDKN1A Missense_Mutation p.R32H 0.29 tolerated(0.13) possibly_damaging(0.782) TCGA-KK-A59V-01 6 38652182 38652182 C T GLO1 Silent p.A92A 0.29 TCGA-KK-A59V-01 6 41900303 41900303 C T BYSL Silent p.A391A 0.29 TCGA-KK-A59V-01 6 43024050 43024050 G T MRPL2 Silent p.P133P 0.22 TCGA-KK-A59V-01 6 43099822 43099822 G A PTK7 Missense_Mutation p.R302H 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-KK-A59V-01 6 44141052 44141052 C - CAPN11 Frame_Shift_Del p.P255Lfs*33 0.10 TCGA-KK-A59V-01 6 44199798 44199798 G A SLC29A1 Missense_Mutation p.V310M 0.32 deleterious(0) probably_damaging(0.984) TCGA-KK-A59V-01 6 47649198 47649198 C T GPR111 Silent p.N301N 0.28 TCGA-KK-A59V-01 6 49425735 49425735 G A MUT Missense_Mutation p.A141V 0.34 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-KK-A59V-01 6 55443862 55443862 C A HMGCLL1 5'UTR 0.28 TCGA-KK-A59V-01 6 55638931 55638931 C T BMP5 Missense_Mutation p.V315M 0.22 deleterious(0.04) possibly_damaging(0.683) TCGA-KK-A59V-01 6 70991121 70991121 G - COL9A1 Frame_Shift_Del p.P283Lfs*45 0.19 TCGA-KK-A59V-01 6 80223398 80223398 C T LCA5 Missense_Mutation p.R84H 0.26 deleterious(0.03) benign(0.371) TCGA-KK-A59V-01 6 80720539 80720539 A - TTK Frame_Shift_Del p.S162Vfs*9 0.23 TCGA-KK-A59V-01 6 83810593 83810593 T - DOPEY1 Frame_Shift_Del p.L105Yfs*17 0.24 TCGA-KK-A59V-01 6 84884584 84884584 C T KIAA1009 Silent p.A629A 0.22 TCGA-KK-A59V-01 6 87966812 87966812 T - ZNF292 Frame_Shift_Del p.L1157Cfs*5 0.17 TCGA-KK-A59V-01 6 91261842 91261842 G A MAP3K7 Missense_Mutation p.R265C 0.25 deleterious(0) probably_damaging(0.994) TCGA-KK-A59V-01 6 97058503 97058503 T C FHL5 Missense_Mutation p.F187S 0.29 deleterious(0) probably_damaging(0.94) TCGA-KK-A59V-01 7 100172672 100172672 C T LRCH4 3'UTR 0.21 TCGA-KK-A59V-01 7 100210470 100210470 G - MOSPD3 Frame_Shift_Del p.S21Pfs*21 0.20 TCGA-KK-A59V-01 7 100243916 100243916 G A ACTL6B Missense_Mutation p.R386C 0.16 deleterious(0.01) possibly_damaging(0.874) TCGA-KK-A59V-01 7 100357394 100357394 G A ZAN Missense_Mutation p.V1208M 0.38 unknown(0) TCGA-KK-A59V-01 7 100479773 100479773 G A SRRT Silent p.T166T 0.31 TCGA-KK-A59V-01 7 100490935 100490935 G A ACHE Nonsense_Mutation p.R307* 0.36 TCGA-KK-A59V-01 7 107323940 107323940 A - SLC26A4 Frame_Shift_Del p.N322Ifs*22 0.22 TCGA-KK-A59V-01 7 114284876 114284876 G A FOXP2 Intron 0.21 TCGA-KK-A59V-01 7 1192812 1192812 G A ZFAND2A Silent p.L111L 0.07 TCGA-KK-A59V-01 7 122078450 122078450 G A CADPS2 Silent p.L807L 0.34 TCGA-KK-A59V-01 7 123256478 123256478 A - ASB15 Frame_Shift_Del p.G76Dfs*40 0.39 TCGA-KK-A59V-01 7 128807691 128807691 G A TSPAN33 Silent p.Q276Q 0.33 TCGA-KK-A59V-01 7 129064719 129064719 G A AHCYL2 Missense_Mutation p.R522H 0.17 deleterious(0.03) benign(0.157) TCGA-KK-A59V-01 7 129756485 129756485 C T KLHDC10 Missense_Mutation p.R152W 0.29 deleterious(0.03) probably_damaging(0.932) TCGA-KK-A59V-01 7 13949263 13949263 A T ETV1 Missense_Mutation p.F312I 0.04 deleterious(0.04) benign(0.209) TCGA-KK-A59V-01 7 140482934 140482934 T C BRAF Missense_Mutation p.T401A 0.37 tolerated(0.44) benign(0.012) TCGA-KK-A59V-01 7 142045655 142045655 A G TRBV4-2 Silent p.P61P 0.17 TCGA-KK-A59V-01 7 143088514 143088514 C A EPHA1 3'UTR 0.19 TCGA-KK-A59V-01 7 14647099 14647099 G A DGKB Missense_Mutation p.R466C 0.36 deleterious(0) probably_damaging(0.982) TCGA-KK-A59V-01 7 148701135 148701135 G A PDIA4 Silent p.P563P 0.26 TCGA-KK-A59V-01 7 149474811 149474811 C T ZNF467 5'Flank 0.21 TCGA-KK-A59V-01 7 149485020 149485020 C T SSPO RNA 0.36 TCGA-KK-A59V-01 7 149493460 149493460 T - SSPO Intron 0.11 TCGA-KK-A59V-01 7 150839547 150839547 G A AGAP3 Missense_Mutation p.C700Y 0.32 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 7 150839616 150839616 C T AGAP3 Missense_Mutation p.P723L 0.24 deleterious(0.01) probably_damaging(1) TCGA-KK-A59V-01 7 155595716 155595716 C T SHH Missense_Mutation p.A423T 0.30 tolerated(0.66) benign(0.178) TCGA-KK-A59V-01 7 157049709 157049709 T C UBE3C Missense_Mutation p.C1018R 0.28 deleterious(0) probably_damaging(0.997) TCGA-KK-A59V-01 7 158695164 158695164 A - WDR60 Frame_Shift_Del p.K414Rfs*22 0.11 TCGA-KK-A59V-01 7 16913405 16913405 T - AGR3 Frame_Shift_Del p.S58Vfs*5 0.31 TCGA-KK-A59V-01 7 22767150 22767150 C T IL6 Missense_Mutation p.S36F 0.29 tolerated(0.21) benign(0.025) TCGA-KK-A59V-01 7 2404100 2404100 T A EIF3B Missense_Mutation p.F365I 0.04 deleterious(0.03) benign(0.018) TCGA-KK-A59V-01 7 2691855 2691855 C T TTYH3 Silent p.R302R 0.13 TCGA-KK-A59V-01 7 27285737 27285737 C T EVX1 Missense_Mutation p.P306L 0.23 deleterious(0) possibly_damaging(0.826) TCGA-KK-A59V-01 7 2751998 2751998 C T AMZ1 Missense_Mutation p.T328M 0.37 deleterious(0.04) benign(0.014) TCGA-KK-A59V-01 7 30094419 30094419 G A PLEKHA8 Silent p.P297P 0.21 TCGA-KK-A59V-01 7 38829422 38829422 G A VPS41 Missense_Mutation p.P255S 0.26 tolerated(0.06) probably_damaging(1) TCGA-KK-A59V-01 7 3998621 3998622 TG - SDK1 Frame_Shift_Del p.V404Gfs*59 0.19 TCGA-KK-A59V-01 7 4185504 4185504 G - SDK1 Frame_Shift_Del p.E1462Sfs*29 0.34 TCGA-KK-A59V-01 7 43916458 43916458 G A URGCP Silent p.C868C 0.38 TCGA-KK-A59V-01 7 43917567 43917567 C - URGCP Frame_Shift_Del p.D499Tfs*30 0.25 TCGA-KK-A59V-01 7 44431997 44431997 G A NUDCD3 Missense_Mutation p.R292C 0.29 deleterious(0) possibly_damaging(0.798) TCGA-KK-A59V-01 7 50467961 50467961 A G IKZF1 Missense_Mutation p.D357G 0.27 deleterious(0) probably_damaging(0.983) TCGA-KK-A59V-01 7 53104142 53104142 G A POM121L12 Missense_Mutation p.A260T 0.06 tolerated_low_confidence(0.53) probably_damaging(0.913) TCGA-KK-A59V-01 7 5662502 5662502 G A RNF216 Missense_Mutation p.H921Y 0.04 tolerated_low_confidence(0.16) possibly_damaging(0.594) TCGA-KK-A59V-01 7 6193761 6193761 C T USP42 Missense_Mutation p.P859L 0.26 tolerated(0.06) possibly_damaging(0.772) TCGA-KK-A59V-01 7 64526690 64526690 T - SNORA22 3'Flank 0.30 TCGA-KK-A59V-01 7 6639708 6639708 G A C7orf26 Missense_Mutation p.V277M 0.19 tolerated(0.11) benign(0.043) TCGA-KK-A59V-01 7 74202414 74202414 G - NCF1 Frame_Shift_Del p.A298Rfs*78 0.18 TCGA-KK-A59V-01 7 75140296 75140296 G A Y_RNA 3'Flank 0.05 TCGA-KK-A59V-01 7 76111999 76112000 - G DTX2 Frame_Shift_Ins p.Y150Vfs*204 0.12 TCGA-KK-A59V-01 7 77423724 77423724 A - TMEM60 5'UTR 0.26 TCGA-KK-A59V-01 7 8126004 8126004 G A GLCCI1 Missense_Mutation p.V494I 0.08 tolerated(0.13) benign(0.008) TCGA-KK-A59V-01 7 82580189 82580189 G A PCLO Missense_Mutation p.R3239C 0.30 unknown(0) TCGA-KK-A59V-01 7 82583452 82583452 T C PCLO Missense_Mutation p.I2273V 0.05 unknown(0) TCGA-KK-A59V-01 7 87006704 87006704 T G CROT Missense_Mutation p.W334G 0.25 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 7 87838684 87838684 C T SRI Missense_Mutation p.A161T 0.20 tolerated(0.05) benign(0.333) TCGA-KK-A59V-01 7 94898626 94898626 G A PPP1R9A Silent p.P977P 0.20 TCGA-KK-A59V-01 7 95705442 95705442 C A DYNC1I1 Missense_Mutation p.P545H 0.34 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 7 99305556 99305556 T C CYP3A7 Missense_Mutation p.Y432C 0.04 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 7 99690698 99690698 G A MCM7 Nonsense_Mutation p.R673* 0.22 TCGA-KK-A59V-01 8 100887781 100887781 C - VPS13B Frame_Shift_Del p.S3988Pfs*25 0.26 TCGA-KK-A59V-01 8 106814359 106814359 C T ZFPM2 Silent p.D683D 0.07 TCGA-KK-A59V-01 8 110576705 110576705 G A EBAG9 Missense_Mutation p.E187K 0.27 deleterious(0) possibly_damaging(0.866) TCGA-KK-A59V-01 8 116426269 116426270 - T TRPS1 Frame_Shift_Ins p.N1289Kfs*5 0.25 TCGA-KK-A59V-01 8 121216025 121216025 G A COL14A1 Missense_Mutation p.E319K 0.27 deleterious(0.01) possibly_damaging(0.86) TCGA-KK-A59V-01 8 133196530 133196530 G A KCNQ3 Missense_Mutation p.R188W 0.25 deleterious(0.02) probably_damaging(0.986) TCGA-KK-A59V-01 8 139890023 139890023 G A COL22A1 Missense_Mutation p.R210W 0.25 unknown(0) TCGA-KK-A59V-01 8 141321377 141321377 G A TRAPPC9 Missense_Mutation p.P629L 0.31 deleterious(0) probably_damaging(0.996) TCGA-KK-A59V-01 8 141745435 141745435 G A PTK2 Missense_Mutation p.P649S 0.27 deleterious(0) benign(0.074) TCGA-KK-A59V-01 8 142222365 142222365 G A SLC45A4 Silent p.S693S 0.29 TCGA-KK-A59V-01 8 144812678 144812679 TT - FAM83H Frame_Shift_Del p.K25Rfs*34 0.27 TCGA-KK-A59V-01 8 144993838 144993838 G A PLEC Missense_Mutation p.T3521M 0.26 probably_damaging(1) TCGA-KK-A59V-01 8 145001706 145001706 G A PLEC Missense_Mutation p.R1347C 0.26 unknown(0) TCGA-KK-A59V-01 8 145742551 145742551 C - RECQL4 Frame_Shift_Del p.H81Ifs*2 0.21 TCGA-KK-A59V-01 8 146107479 146107479 C T ZNF250 Silent p.T368T 0.25 TCGA-KK-A59V-01 8 17102627 17102627 A C CNOT7 Missense_Mutation p.I12S 0.31 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 8 20107641 20107641 C T LZTS1 Silent p.A461A 0.29 TCGA-KK-A59V-01 8 22140592 22140592 A G PIWIL2 Silent p.G157G 0.30 TCGA-KK-A59V-01 8 22415670 22415670 G A SORBS3 Missense_Mutation p.R148Q 0.23 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 8 22472378 22472378 G A CCAR2 Missense_Mutation p.A357T 0.08 tolerated(0.28) benign(0.012) TCGA-KK-A59V-01 8 22884792 22884792 G A TNFRSF10B Nonsense_Mutation p.R264* 0.09 TCGA-KK-A59V-01 8 25701972 25701972 G T EBF2 3'UTR 0.31 TCGA-KK-A59V-01 8 26627511 26627511 C T ADRA1A Intron 0.38 TCGA-KK-A59V-01 8 29921408 29921408 C T TMEM66 Missense_Mutation p.R339Q 0.31 deleterious(0) probably_damaging(0.998) TCGA-KK-A59V-01 8 36780109 36780110 - T KCNU1 Frame_Shift_Ins p.S902Ffs*40 0.11 TCGA-KK-A59V-01 8 37730604 37730604 G A RAB11FIP1 Silent p.G572G 0.25 TCGA-KK-A59V-01 8 41456800 41456800 A - AGPAT6 Frame_Shift_Del p.S49Vfs*3 0.25 TCGA-KK-A59V-01 8 42611381 42611381 T C CHRNA6 Missense_Mutation p.T321A 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-KK-A59V-01 8 53073993 53073993 G A ST18 Silent p.F512F 0.06 TCGA-KK-A59V-01 8 67342657 67342657 G T RRS1 3'UTR 0.23 TCGA-KK-A59V-01 8 69002947 69002947 G A PREX2 Silent p.T749T 0.31 TCGA-KK-A59V-01 8 72211430 72211430 G A EYA1 Silent p.Y226Y 0.28 TCGA-KK-A59V-01 8 77766738 77766738 G A ZFHX4 Silent p.P2527P 0.03 TCGA-KK-A59V-01 8 8176649 8176649 G - SGK223 Frame_Shift_Del p.P1079Lfs*56 0.16 TCGA-KK-A59V-01 8 87486446 87486446 C T RMDN1 3'UTR 0.42 TCGA-KK-A59V-01 8 88365930 88365930 G A CNBD1 Missense_Mutation p.V407I 0.26 tolerated(0.44) benign(0.04) TCGA-KK-A59V-01 8 95188892 95188892 C T CDH17 Missense_Mutation p.A101T 0.32 tolerated(0.25) benign(0.285) TCGA-KK-A59V-01 8 98943456 98943456 A G MATN2 Missense_Mutation p.I140V 0.39 deleterious(0) possibly_damaging(0.812) TCGA-KK-A59V-01 9 100082480 100082480 G A CCDC180 Silent p.K428K 0.28 TCGA-KK-A59V-01 9 100137845 100137845 G A CCDC180 Missense_Mutation p.V1650M 0.25 deleterious(0) possibly_damaging(0.791) TCGA-KK-A59V-01 9 107602600 107602600 G A ABCA1 Silent p.G338G 0.08 TCGA-KK-A59V-01 9 108382270 108382270 T - FKTN Frame_Shift_Del p.F369Sfs*37 0.30 TCGA-KK-A59V-01 9 109687842 109687842 C T ZNF462 Missense_Mutation p.P550L 0.29 possibly_damaging(0.726) TCGA-KK-A59V-01 9 111741628 111741628 C T CTNNAL1 Missense_Mutation p.R345H 0.32 tolerated(0.16) benign(0.022) TCGA-KK-A59V-01 9 112963213 112963213 G A C9orf152 3'UTR 0.08 TCGA-KK-A59V-01 9 113547964 113547964 G A MUSK Missense_Mutation p.G582R 0.08 deleterious(0) probably_damaging(1) TCGA-KK-A59V-01 9 115806153 115806154 - T ZFP37 Frame_Shift_Ins p.H249Tfs*2 0.10 TCGA-KK-A59V-01 9 117103926 117103926 C T AKNA Silent p.S1318S 0.23 TCGA-KK-A59V-01 9 117106079 117106079 G A AKNA Silent p.H1222H 0.25 TCGA-KK-A59V-01 9 117666341 117666341 T C TNFSF8 Missense_Mutation p.Q192R 0.25 tolerated(0.09) possibly_damaging(0.898) TCGA-KK-A59V-01 9 119249669 119249669 A T ASTN2 Missense_Mutation p.F1105I 0.29 tolerated(0.97) unknown(0) TCGA-KK-A59V-01 9 124535156 124535156 C T DAB2IP Silent p.A755A 0.31 TCGA-KK-A59V-01 9 126143682 126143682 C T DENND1A 3'UTR 0.28 TCGA-KK-A59V-01 9 127570100 127570100 C - OLFML2A Frame_Shift_Del p.P405Lfs*2 0.11 TCGA-KK-A59V-01 9 130198257 130198257 C T ZNF79 Silent p.G101G 0.06 TCGA-KK-A59V-01 9 130293932 130293932 G A FAM129B Missense_Mutation p.R61C 0.33 deleterious(0.02) probably_damaging(0.934) TCGA-KK-A59V-01 9 131671592 131671592 G A LRRC8A Missense_Mutation p.A717T 0.24 tolerated(0.41) possibly_damaging(0.828) TCGA-KK-A59V-01 9 131832160 131832160 C T FAM73B Silent p.S497S 0.32 TCGA-KK-A59V-01 9 133512422 133512422 G A FUBP3 3'UTR 0.30 TCGA-KK-A59V-01 9 133738400 133738400 C T ABL1 Missense_Mutation p.T286M 0.27 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 9 133759623 133759623 C - ABL1 Frame_Shift_Del p.L670Wfs*43 0.25 TCGA-KK-A59V-01 9 134346320 134346320 C T PRRC2B Missense_Mutation p.T686M 0.10 tolerated(0.62) possibly_damaging(0.677) TCGA-KK-A59V-01 9 135073796 135073796 C T NTNG2 Silent p.F219F 0.27 TCGA-KK-A59V-01 9 136083533 136083533 G A OBP2B Silent p.G88G 0.23 TCGA-KK-A59V-01 9 136230378 136230380 CTT - SURF4 In_Frame_Del p.K267del 0.19 TCGA-KK-A59V-01 9 140361795 140361795 G A PNPLA7 Missense_Mutation p.R1005W 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-KK-A59V-01 9 18504839 18504839 G A ADAMTSL1 Missense_Mutation p.A26T 0.25 tolerated(0.72) probably_damaging(0.985) TCGA-KK-A59V-01 9 18622252 18622252 C T ADAMTSL1 Silent p.C162C 0.08 TCGA-KK-A59V-01 9 2119528 2119528 T - SMARCA2 Frame_Shift_Del p.F1253Lfs*22 0.23 TCGA-KK-A59V-01 9 2643685 2643685 G A VLDLR Missense_Mutation p.G293D 0.10 deleterious(0) benign(0.418) TCGA-KK-A59V-01 9 34381368 34381368 G A C9orf24 Silent p.Y157Y 0.29 TCGA-KK-A59V-01 9 34517405 34517405 C T DNAI1 Silent p.G647G 0.23 TCGA-KK-A59V-01 9 35809979 35809979 C T SPAG8 Intron 0.26 TCGA-KK-A59V-01 9 36211633 36211633 C T CLTA Silent p.D203D 0.24 TCGA-KK-A59V-01 9 5763494 5763494 A G KIAA1432 Missense_Mutation p.T823A 0.05 deleterious(0.01) benign(0.038) TCGA-KK-A59V-01 9 6328900 6328900 G A TPD52L3 Missense_Mutation p.G102D 0.15 deleterious(0.04) benign(0.286) TCGA-KK-A59V-01 9 71861684 71861684 C T TJP2 Missense_Mutation p.A913V 0.19 tolerated(0.1) possibly_damaging(0.863) TCGA-KK-A59V-01 9 73152135 73152135 C T TRPM3 Silent p.S1286S 0.31 TCGA-KK-A59V-01 9 77442715 77442715 A G TRPM6 Missense_Mutation p.S274P 0.23 deleterious(0.01) possibly_damaging(0.905) TCGA-KK-A59V-01 9 8449746 8449746 G A PTPRD Missense_Mutation p.R1323C 0.17 deleterious(0) possibly_damaging(0.462) TCGA-KK-A59V-01 9 8524957 8524957 C T PTPRD Missense_Mutation p.R216H 0.04 deleterious(0) probably_damaging(0.999) TCGA-KK-A59V-01 9 86465140 86465140 G A KIF27 Missense_Mutation p.R1144W 0.31 deleterious(0) possibly_damaging(0.582) TCGA-KK-A59V-01 9 95078067 95078067 A T NOL8 Missense_Mutation p.N280K 0.24 tolerated(0.07) benign(0.039) TCGA-KK-A59V-01 9 95766401 95766401 C T FGD3 Missense_Mutation p.T221M 0.21 deleterious(0.04) benign(0.243) TCGA-KK-A59V-01 9 97088128 97088128 G A NUTM2F Silent p.P35P 0.31 TCGA-KK-A59V-01 X 103349173 103349173 C A SLC25A53 Missense_Mutation p.Q256H 0.50 tolerated(0.37) benign(0.007) TCGA-KK-A59V-01 X 104464233 104464233 C A TEX13A Nonsense_Mutation p.E215* 0.61 TCGA-KK-A59V-01 X 128723862 128723862 G A OCRL Missense_Mutation p.R837H 0.46 tolerated(0.27) benign(0.089) TCGA-KK-A59V-01 X 129370543 129370543 T - ZNF280C Frame_Shift_Del p.K188Nfs*11 0.14 TCGA-KK-A59V-01 X 13778282 13778282 G A OFD1 Missense_Mutation p.R568H 0.55 tolerated(0.26) benign(0.014) TCGA-KK-A59V-01 X 149831996 149831996 C T MTM1 Nonsense_Mutation p.R520* 0.19 TCGA-KK-A59V-01 X 152772502 152772502 C T BGN Intron 0.73 TCGA-KK-A59V-01 X 152937471 152937471 A G PNCK Missense_Mutation p.V176A 0.10 tolerated(0.09) possibly_damaging(0.764) TCGA-KK-A59V-01 X 153132319 153132319 C T L1CAM Missense_Mutation p.R739Q 0.71 tolerated(0.49) benign(0.006) TCGA-KK-A59V-01 X 153587696 153587696 G A FLNA Silent p.D1407D 0.04 TCGA-KK-A59V-01 X 19389112 19389112 C T MAP3K15 Missense_Mutation p.R1122Q 0.09 tolerated(0.44) benign(0.025) TCGA-KK-A59V-01 X 37028757 37028757 C T FAM47C Silent p.R758R 0.16 TCGA-KK-A59V-01 X 47069466 47069466 C T UBA1 Missense_Mutation p.H715Y 0.11 deleterious(0) benign(0.256) TCGA-KK-A59V-01 X 65413405 65413405 C T HEPH Nonsense_Mutation p.R486* 0.17 TCGA-KK-A59V-01 X 68381892 68381892 G A PJA1 Missense_Mutation p.P397L 0.41 deleterious(0.04) benign(0.165) TCGA-KK-A59V-01 X 70472963 70472963 G - ZMYM3 Frame_Shift_Del p.P48Lfs*65 0.42 TCGA-KK-A59V-01 X 70613207 70613207 A G TAF1 Silent p.E1056E 0.07 TCGA-KK-A59V-01 X 77150899 77150899 C T MAGT1 Silent p.A35A 0.73 TCGA-KK-A59V-01 X 9841702 9841702 G A SHROOM2 Missense_Mutation p.G59D 0.09 deleterious(0) probably_damaging(0.997) TCGA-KK-A59V-01 X 99662413 99662413 G A PCDH19 Nonsense_Mutation p.R395* 0.45 TCGA-KK-A59X-01 10 13371763 13371763 C T SEPHS1 Missense_Mutation p.V196M 0.33 deleterious(0.01) possibly_damaging(0.897) TCGA-KK-A59X-01 11 76370599 76370599 T C LRRC32 3'UTR 0.38 TCGA-KK-A59X-01 11 803339 803339 G A PIDD Missense_Mutation p.R182C 0.38 tolerated(0.34) benign(0.01) TCGA-KK-A59X-01 12 108985717 108985717 C T TMEM119 Missense_Mutation p.R148Q 0.41 tolerated(0.1) benign(0.024) TCGA-KK-A59X-01 12 118472080 118472080 C G WSB2 Missense_Mutation p.S379T 0.35 tolerated(0.42) benign(0.018) TCGA-KK-A59X-01 12 7172584 7172584 A G C1S Missense_Mutation p.N233S 0.33 tolerated(0.91) benign(0.038) TCGA-KK-A59X-01 13 101797243 101797243 T G NALCN Missense_Mutation p.K615T 0.03 deleterious(0) probably_damaging(0.992) TCGA-KK-A59X-01 14 21215868 21215868 A G EDDM3A Silent p.R43R 0.33 TCGA-KK-A59X-01 15 55651764 55651764 T C CCPG1 Missense_Mutation p.H736R 0.88 tolerated(0.15) benign(0.36) TCGA-KK-A59X-01 15 74425259 74425259 C T ISLR2 Missense_Mutation p.T55M 0.46 deleterious(0) probably_damaging(0.999) TCGA-KK-A59X-01 15 75580623 75580623 G A GOLGA6D Missense_Mutation p.R161H 0.68 tolerated(0.09) benign(0) TCGA-KK-A59X-01 15 78921727 78921727 G A CHRNB4 Missense_Mutation p.T307I 0.41 deleterious(0.01) probably_damaging(1) TCGA-KK-A59X-01 16 57738847 57738847 C T CCDC135 Silent p.D253D 0.31 TCGA-KK-A59X-01 16 84065527 84065527 C T SLC38A8 Missense_Mutation p.V193M 0.69 deleterious(0.02) possibly_damaging(0.847) TCGA-KK-A59X-01 17 37681027 37681027 T C CDK12 Missense_Mutation p.S1066P 0.34 benign(0.006) TCGA-KK-A59X-01 17 3959636 3959636 T C ZZEF1 Silent p.Q1723Q 0.39 TCGA-KK-A59X-01 17 42390823 42390823 G A RUNDC3A Missense_Mutation p.R137H 0.27 tolerated(0.24) probably_damaging(1) TCGA-KK-A59X-01 17 47696643 47696643 A C SPOP Missense_Mutation p.F102C 0.47 deleterious(0) probably_damaging(1) TCGA-KK-A59X-01 18 14184231 14184231 A G ANKRD20A5P Intron 0.12 TCGA-KK-A59X-01 18 43685267 43685267 C T HAUS1 Silent p.V46V 0.61 TCGA-KK-A59X-01 18 48591888 48591888 G T SMAD4 Missense_Mutation p.D351Y 0.07 deleterious(0) probably_damaging(1) TCGA-KK-A59X-01 18 48591901 48591901 A T SMAD4 Missense_Mutation p.D355V 0.57 deleterious(0) probably_damaging(1) TCGA-KK-A59X-01 19 11649778 11649778 C T CNN1 Silent p.Y12Y 0.38 TCGA-KK-A59X-01 19 45207372 45207372 C G CEACAM16 Missense_Mutation p.P156R 0.30 tolerated(0.09) probably_damaging(0.993) TCGA-KK-A59X-01 19 46032604 46032604 C A OPA3 Missense_Mutation p.G85C 0.47 deleterious(0.04) probably_damaging(1) TCGA-KK-A59X-01 19 49517861 49517861 G T RUVBL2 Splice_Site p.X374_splice 0.35 TCGA-KK-A59X-01 19 50958485 50958485 G A MYBPC2 Missense_Mutation p.R712H 0.37 deleterious(0) probably_damaging(0.992) TCGA-KK-A59X-01 19 51359573 51359573 G C KLK3 Missense_Mutation p.V42L 0.03 tolerated(0.86) benign(0.189) TCGA-KK-A59X-01 19 6822295 6822295 C G VAV1 Missense_Mutation p.D171E 0.40 tolerated(0.12) possibly_damaging(0.7) TCGA-KK-A59X-01 1 92195471 92195471 C T TGFBR3 Missense_Mutation p.A210T 0.34 deleterious(0) probably_damaging(0.96) TCGA-KK-A59X-01 20 3686562 3686562 C T SIGLEC1 Missense_Mutation p.D179N 0.40 tolerated(0.37) benign(0.168) TCGA-KK-A59X-01 20 44639788 44639788 C A MMP9 Missense_Mutation p.P219Q 0.36 tolerated(0.18) benign(0.021) TCGA-KK-A59X-01 21 46086322 46086322 G C KRTAP12-2 3'UTR 0.38 TCGA-KK-A59X-01 22 38883946 38883946 T C DDX17 Missense_Mutation p.N541S 0.43 deleterious(0.04) benign(0.142) TCGA-KK-A59X-01 2 27305786 27305786 G - EMILIN1 Frame_Shift_Del p.L452Cfs*5 0.09 TCGA-KK-A59X-01 3 25215907 25215907 G A AC133680.1 3'Flank 0.40 TCGA-KK-A59X-01 3 46713451 46713451 C T ALS2CL Silent p.S869S 0.05 TCGA-KK-A59X-01 3 78987846 78987846 C T ROBO1 Missense_Mutation p.G135E 0.44 deleterious(0) probably_damaging(0.998) TCGA-KK-A59X-01 4 108999454 108999454 C T LEF1 Missense_Mutation p.M310I 0.42 deleterious(0) probably_damaging(0.992) TCGA-KK-A59X-01 4 114469847 114469847 C A CAMK2D Missense_Mutation p.C127F 0.40 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-KK-A59X-01 5 112889507 112889507 C T YTHDC2 Nonsense_Mutation p.Q670* 0.40 TCGA-KK-A59X-01 5 139743379 139743379 C T SLC4A9 Silent p.D406D 0.37 TCGA-KK-A59X-01 5 39377007 39377007 G A DAB2 Missense_Mutation p.P628S 0.04 tolerated(0.05) benign(0.015) TCGA-KK-A59X-01 5 55259975 55259975 T - IL6ST Frame_Shift_Del p.V220* 0.27 TCGA-KK-A59X-01 6 138611047 138611047 C G KIAA1244 Missense_Mutation p.L997V 0.40 deleterious(0) probably_damaging(0.997) TCGA-KK-A59X-01 6 144837472 144837472 T C UTRN Silent p.N1784N 0.41 TCGA-KK-A59X-01 6 152265313 152265313 C T ESR1 Nonsense_Mutation p.R256* 0.35 TCGA-KK-A59X-01 6 17777528 17777528 T C KIF13A Missense_Mutation p.S1384G 0.31 deleterious(0.02) probably_damaging(0.989) TCGA-KK-A59X-01 6 35285708 35285708 T G DEF6 Missense_Mutation p.V283G 0.43 deleterious(0) probably_damaging(0.994) TCGA-KK-A59X-01 6 38906615 38906615 T C DNAH8 Missense_Mutation p.I3736T 0.38 probably_damaging(0.964) TCGA-KK-A59X-01 6 397192 397193 - AA IRF4 Frame_Shift_Ins p.C194Nfs*4 0.36 TCGA-KK-A59X-01 7 151935890 151935890 T C KMT2C Missense_Mutation p.T852A 0.40 possibly_damaging(0.812) TCGA-KK-A59X-01 7 91674411 91674411 G T AKAP9 Missense_Mutation p.R1751L 0.34 benign(0.176) TCGA-KK-A59X-01 8 39624518 39624518 G A ADAM2 Silent p.C452C 0.43 TCGA-KK-A59X-01 8 93004008 93004008 A G RUNX1T1 Missense_Mutation p.Y295H 0.33 tolerated(0.59) benign(0.002) TCGA-KK-A59X-01 8 96167051 96167051 G A PLEKHF2 3'UTR 0.45 TCGA-KK-A59X-01 9 138392971 138392971 T A MRPS2 Splice_Site p.X57_splice 0.33 TCGA-KK-A59X-01 9 2643660 2643661 TG - VLDLR Frame_Shift_Del p.C285* 0.35 TCGA-KK-A59X-01 X 102864068 102864068 G A TCEAL3 Missense_Mutation p.D26N 0.84 tolerated(0.21) benign(0.094) TCGA-KK-A59X-01 X 2408792 2408792 G C ZBED1 5'UTR 0.41 TCGA-KK-A59X-01 X 39933375 39933375 C T BCOR Silent p.G408G 0.09 TCGA-KK-A59Y-01 10 115980545 115980545 C T TDRD1 Missense_Mutation p.P905S 0.16 tolerated(0.47) benign(0.057) TCGA-KK-A59Y-01 10 12111037 12111037 C T DHTKD1 Missense_Mutation p.A2V 0.48 deleterious_low_confidence(0) unknown(0) TCGA-KK-A59Y-01 10 95159250 95159250 C T MYOF Missense_Mutation p.D374N 0.33 deleterious(0) probably_damaging(1) TCGA-KK-A59Y-01 11 1025072 1025072 G T MUC6 Nonsense_Mutation p.C999* 0.36 TCGA-KK-A59Y-01 11 21135236 21135236 C T NELL1 Missense_Mutation p.R468C 0.24 tolerated(0.08) benign(0.178) TCGA-KK-A59Y-01 11 608013 608013 G A PHRF1 Missense_Mutation p.G852S 0.44 tolerated(0.12) benign(0.259) TCGA-KK-A59Y-01 11 71671926 71671926 C T RNF121 Missense_Mutation p.R78C 0.36 deleterious(0) possibly_damaging(0.556) TCGA-KK-A59Y-01 12 13716879 13716879 G A GRIN2B Missense_Mutation p.S1098F 0.26 tolerated(0.58) possibly_damaging(0.837) TCGA-KK-A59Y-01 13 95858797 95858797 G A ABCC4 Nonsense_Mutation p.R384* 0.22 TCGA-KK-A59Y-01 14 78174327 78174327 G A ALKBH1 Silent p.A7A 0.46 TCGA-KK-A59Y-01 15 31197979 31197979 T C FAN1 Silent p.G371G 0.09 TCGA-KK-A59Y-01 15 32460275 32460275 G A CHRNA7 Silent p.A404A 0.26 TCGA-KK-A59Y-01 16 425421 425421 G C TMEM8A Missense_Mutation p.N413K 0.29 tolerated(0.17) benign(0.009) TCGA-KK-A59Y-01 16 67270959 67270959 C T FHOD1 Missense_Mutation p.R351Q 0.43 deleterious(0.04) benign(0.285) TCGA-KK-A59Y-01 17 37009215 37009215 A T RPL23 Intron 0.29 TCGA-KK-A59Y-01 17 66266980 66266980 C T SLC16A6 Missense_Mutation p.G441S 0.32 deleterious(0) probably_damaging(1) TCGA-KK-A59Y-01 17 7412414 7412414 G A POLR2A Missense_Mutation p.R1206Q 0.10 benign(0.427) TCGA-KK-A59Y-01 18 47792817 47792817 C T CCDC11 5'UTR 0.31 TCGA-KK-A59Y-01 18 5891983 5891983 C T TMEM200C Missense_Mutation p.R27H 0.47 deleterious(0.02) probably_damaging(0.991) TCGA-KK-A59Y-01 19 16664638 16664638 C T SLC35E1 Missense_Mutation p.R362Q 0.34 tolerated(0.5) benign(0.004) TCGA-KK-A59Y-01 19 22157142 22157142 T G ZNF208 Missense_Mutation p.K232Q 0.38 tolerated(0.24) benign(0.045) TCGA-KK-A59Y-01 19 3180027 3180027 C T S1PR4 3'UTR 0.15 TCGA-KK-A59Y-01 19 49167879 49167879 C A NTN5 Missense_Mutation p.W259C 0.09 deleterious(0.01) probably_damaging(0.943) TCGA-KK-A59Y-01 19 55994210 55994210 G A ZNF628 Silent p.T550T 0.36 TCGA-KK-A59Y-01 1 16376374 16376374 A T CLCNKB Missense_Mutation p.R311W 0.33 deleterious(0) possibly_damaging(0.823) TCGA-KK-A59Y-01 1 216420426 216420426 T - USH2A Frame_Shift_Del p.E771Kfs*17 0.21 TCGA-KK-A59Y-01 20 40141606 40141607 - GCTTTA CHD6 In_Frame_Ins p.K243_R244insLK 0.30 TCGA-KK-A59Y-01 3 16216929 16216929 C T GALNT15 Missense_Mutation p.R91W 0.35 deleterious(0.04) possibly_damaging(0.704) TCGA-KK-A59Y-01 5 126784895 126784895 C T MEGF10 Silent p.G987G 0.11 TCGA-KK-A59Y-01 6 39869739 39869739 C T DAAM2 Missense_Mutation p.R1045C 0.45 deleterious(0) probably_damaging(0.997) TCGA-KK-A59Y-01 7 55223567 55223567 G T EGFR Missense_Mutation p.G312W 0.50 deleterious(0) possibly_damaging(0.86) TCGA-KK-A59Z-01 10 35318439 35318439 T G CUL2 Missense_Mutation p.S525R 0.35 deleterious(0.02) benign(0.361) TCGA-KK-A59Z-01 10 96827440 96827440 T G CYP2C8 Missense_Mutation p.K59N 0.41 deleterious(0.01) possibly_damaging(0.587) TCGA-KK-A59Z-01 11 109294354 109294354 G A C11orf87 5'UTR 1.00 TCGA-KK-A59Z-01 11 55135991 55135991 C A OR4A15 Missense_Mutation p.P211H 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-KK-A59Z-01 11 55541087 55541087 T C OR5D13 Silent p.H58H 0.05 TCGA-KK-A59Z-01 11 61323611 61323611 G C SYT7 Missense_Mutation p.L34V 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.567) TCGA-KK-A59Z-01 11 66061863 66061863 C A TMEM151A Missense_Mutation p.T49K 0.43 deleterious(0) probably_damaging(0.998) TCGA-KK-A59Z-01 12 104134472 104134472 G A STAB2 Missense_Mutation p.R1940Q 0.20 tolerated(0.63) benign(0) TCGA-KK-A59Z-01 12 110924408 110924408 C T FAM216A Missense_Mutation p.T169I 0.40 deleterious_low_confidence(0.03) benign(0.176) TCGA-KK-A59Z-01 12 117685282 117685282 G A NOS1 Silent p.C932C 0.15 TCGA-KK-A59Z-01 12 27835611 27835611 G T PPFIBP1 Missense_Mutation p.G747V 0.31 deleterious(0) probably_damaging(1) TCGA-KK-A59Z-01 12 33579131 33579131 G A SYT10 Missense_Mutation p.H151Y 0.48 deleterious(0.01) benign(0.412) TCGA-KK-A59Z-01 12 6204490 6204490 C T VWF Intron 0.42 TCGA-KK-A59Z-01 12 65461496 65461496 G T WIF1 Missense_Mutation p.H205N 0.17 deleterious(0.04) benign(0.001) TCGA-KK-A59Z-01 12 66357159 66357159 C G HMGA2 3'UTR 0.36 TCGA-KK-A59Z-01 13 19748102 19748102 G T TUBA3C Missense_Mutation p.F418L 0.07 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-KK-A59Z-01 13 23912565 23912565 G A SACS Missense_Mutation p.T1817M 0.22 possibly_damaging(0.647) TCGA-KK-A59Z-01 13 23914964 23914967 AAGG - SACS Frame_Shift_Del p.L1017Rfs*17 0.39 TCGA-KK-A59Z-01 13 32371547 32371547 G A RXFP2 Missense_Mutation p.E666K 0.41 deleterious(0) benign(0.314) TCGA-KK-A59Z-01 13 73396007 73396007 A G PIBF1 Silent p.K231K 0.59 TCGA-KK-A59Z-01 14 105936451 105936451 C T MTA1 Missense_Mutation p.R683W 0.04 deleterious(0) probably_damaging(0.99) TCGA-KK-A59Z-01 14 59112126 59112126 A T DACT1 Missense_Mutation p.N262I 0.11 deleterious(0) probably_damaging(0.999) TCGA-KK-A59Z-01 15 42456581 42456581 C T VPS39 Silent p.R667R 0.13 TCGA-KK-A59Z-01 15 48431347 48431347 C A SLC24A5 Silent p.I351I 0.58 TCGA-KK-A59Z-01 16 23640966 23640966 C T PALB2 Missense_Mutation p.E837K 0.14 tolerated(0.09) benign(0.156) TCGA-KK-A59Z-01 16 31277424 31277424 C T ITGAM Missense_Mutation p.S128F 0.28 deleterious(0.02) probably_damaging(0.924) TCGA-KK-A59Z-01 16 66946577 66946577 G A CDH16 Silent p.G424G 0.33 TCGA-KK-A59Z-01 16 87872329 87872329 G A SLC7A5 Missense_Mutation p.T345I 0.21 deleterious(0) probably_damaging(0.998) TCGA-KK-A59Z-01 17 39767667 39767667 C G KRT16 Missense_Mutation p.R234T 0.40 deleterious(0.02) possibly_damaging(0.775) TCGA-KK-A59Z-01 17 4496308 4496308 G A SMTNL2 Missense_Mutation p.R191Q 0.23 tolerated(0.62) benign(0.004) TCGA-KK-A59Z-01 17 47696425 47696425 A C SPOP Missense_Mutation p.F133C 0.35 deleterious(0.01) probably_damaging(1) TCGA-KK-A59Z-01 17 61914805 61914805 G A SMARCD2 Missense_Mutation p.R133W 0.46 deleterious(0.02) possibly_damaging(0.642) TCGA-KK-A59Z-01 17 72340364 72340364 C A KIF19 Silent p.I153I 0.46 TCGA-KK-A59Z-01 18 21663037 21663037 C T TTC39C Nonsense_Mutation p.R326* 0.13 TCGA-KK-A59Z-01 18 61030014 61030014 C T KDSR Missense_Mutation p.E66K 0.41 tolerated(0.35) benign(0.199) TCGA-KK-A59Z-01 19 10464234 10464234 C T TYK2 Silent p.Q999Q 0.50 TCGA-KK-A59Z-01 19 39233710 39233710 T A CAPN12 Missense_Mutation p.E90D 0.11 tolerated(0.39) probably_damaging(0.977) TCGA-KK-A59Z-01 19 40421659 40421659 G A FCGBP Silent p.C754C 0.31 TCGA-KK-A59Z-01 19 47151969 47151969 C T DACT3 Missense_Mutation p.E554K 0.11 deleterious(0.01) possibly_damaging(0.502) TCGA-KK-A59Z-01 1 204236639 204236639 A G PLEKHA6 Missense_Mutation p.F82L 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-KK-A59Z-01 1 64608211 64608211 G A ROR1 Missense_Mutation p.R351H 0.10 tolerated(0.13) probably_damaging(0.931) TCGA-KK-A59Z-01 20 47588909 47588909 G T ARFGEF2 Missense_Mutation p.S491I 0.35 deleterious(0) probably_damaging(0.992) TCGA-KK-A59Z-01 22 23401783 23401783 C A RTDR1 Missense_Mutation p.A302S 0.19 tolerated(0.08) possibly_damaging(0.874) TCGA-KK-A59Z-01 22 24629908 24629908 C T GGT5 Missense_Mutation p.V80I 0.58 tolerated(0.11) possibly_damaging(0.451) TCGA-KK-A59Z-01 2 238668784 238668784 A G LRRFIP1 Silent p.Q275Q 0.29 TCGA-KK-A59Z-01 2 27356412 27356412 C A PREB Missense_Mutation p.A105S 0.39 tolerated(0.19) benign(0.007) TCGA-KK-A59Z-01 3 112732806 112732806 G A C3orf17 Missense_Mutation p.S112F 0.37 tolerated(0.2) benign(0.033) TCGA-KK-A59Z-01 3 133465321 133465321 G A TF Missense_Mutation p.V13I 0.10 tolerated(0.5) benign(0.062) TCGA-KK-A59Z-01 3 141671514 141671514 A T TFDP2 Missense_Mutation p.D394E 0.07 tolerated_low_confidence(0.05) benign(0.026) TCGA-KK-A59Z-01 3 15467811 15467811 G C METTL6 Missense_Mutation p.L70V 0.14 deleterious(0) possibly_damaging(0.814) TCGA-KK-A59Z-01 3 38755487 38755487 G A SCN10A Missense_Mutation p.R1256W 0.41 deleterious(0) probably_damaging(0.991) TCGA-KK-A59Z-01 4 144481199 144481199 C T SMARCA5 3'Flank 0.35 TCGA-KK-A59Z-01 4 147561671 147561671 C G POU4F2 Missense_Mutation p.A314G 0.19 deleterious(0) probably_damaging(0.991) TCGA-KK-A59Z-01 5 140783165 140783165 G T PCDHGA9 Missense_Mutation p.D216Y 0.16 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-KK-A59Z-01 5 149602570 149602570 G A CAMK2A Missense_Mutation p.A483V 0.31 tolerated_low_confidence(0.06) benign(0.445) TCGA-KK-A59Z-01 6 152646275 152646275 C G SYNE1 Missense_Mutation p.D5201H 0.49 possibly_damaging(0.907) TCGA-KK-A59Z-01 7 128450335 128450335 G A CCDC136 Missense_Mutation p.R648H 0.16 tolerated(0.55) benign(0.002) TCGA-KK-A59Z-01 7 149426308 149426308 G CA KRBA1 Frame_Shift_Ins p.R552Pfs*6 0.20 TCGA-KK-A59Z-01 7 37960746 37960746 T A EPDR1 Missense_Mutation p.Y69N 0.25 deleterious(0) probably_damaging(0.996) TCGA-KK-A59Z-01 7 43917137 43917137 C AG URGCP Frame_Shift_Ins p.R642Pfs*96 0.14 TCGA-KK-A59Z-01 8 17418005 17418005 G A SLC7A2 Silent p.Q529Q 0.60 TCGA-KK-A59Z-01 8 21829421 21829421 T G XPO7 Missense_Mutation p.I154S 0.56 deleterious(0) possibly_damaging(0.732) TCGA-KK-A59Z-01 8 24157535 24157558 ATCCTATAAGACTTCATCCACTGC - ADAM28 In_Frame_Del p.P33_H40del 0.33 TCGA-KK-A59Z-01 X 20060693 20060693 A G MAP7D2 Missense_Mutation p.F312L 0.04 tolerated(1) benign(0.007) TCGA-KK-A5A1-01 10 104173704 104173704 C T PSD Missense_Mutation p.A459T 0.08 deleterious(0.04) possibly_damaging(0.449) TCGA-KK-A5A1-01 10 113920534 113920535 TG AAA GPAM Frame_Shift_Ins p.S529Ffs*2 0.29 TCGA-KK-A5A1-01 10 72358721 72358721 G A PRF1 Silent p.N252N 0.13 TCGA-KK-A5A1-01 10 74804782 74804782 T C P4HA1 Missense_Mutation p.I369V 0.15 tolerated(0.24) benign(0.001) TCGA-KK-A5A1-01 10 99371483 99371483 G A HOGA1 3'UTR 0.59 TCGA-KK-A5A1-01 11 205220 205220 G A BET1L 3'UTR 0.36 TCGA-KK-A5A1-01 11 5906107 5906107 G T OR52E4 Missense_Mutation p.K195N 0.07 deleterious(0.04) benign(0.297) TCGA-KK-A5A1-01 11 64897328 64897328 G C SYVN1 Missense_Mutation p.R490G 0.29 deleterious(0.01) unknown(0) TCGA-KK-A5A1-01 11 66307206 66307206 G - ZDHHC24 Frame_Shift_Del p.H217Mfs*82 0.35 TCGA-KK-A5A1-01 11 8120328 8120328 T C TUB Missense_Mutation p.F396S 0.15 deleterious(0) probably_damaging(1) TCGA-KK-A5A1-01 11 94113782 94113782 A T GPR83 Missense_Mutation p.C269S 0.51 tolerated(0.07) benign(0.193) TCGA-KK-A5A1-01 12 101505340 101505340 G A ANO4 Splice_Site p.X733_splice 0.32 TCGA-KK-A5A1-01 12 105150791 105150791 G A CHST11 Missense_Mutation p.R90Q 0.15 tolerated(0.41) benign(0.098) TCGA-KK-A5A1-01 12 130921640 130921640 G T RIMBP2 Missense_Mutation p.P601Q 0.22 deleterious(0.02) possibly_damaging(0.866) TCGA-KK-A5A1-01 12 50369276 50369276 C G AQP6 Missense_Mutation p.A224G 0.03 tolerated(0.48) benign(0.215) TCGA-KK-A5A1-01 12 56232402 56232402 C T MMP19 Missense_Mutation p.A295T 0.53 tolerated(0.05) probably_damaging(0.998) TCGA-KK-A5A1-01 12 69250161 69250161 G A CPM 3'UTR 0.17 TCGA-KK-A5A1-01 13 103701641 103701641 C A SLC10A2 Missense_Mutation p.G306V 0.18 tolerated(0.13) benign(0.01) TCGA-KK-A5A1-01 13 33700314 33700314 G A STARD13 Silent p.G662G 0.13 TCGA-KK-A5A1-01 13 39585447 39585447 G A PROSER1 3'UTR 0.06 TCGA-KK-A5A1-01 13 60435606 60435606 T G DIAPH3 Missense_Mutation p.E891A 0.12 deleterious(0) probably_damaging(0.999) TCGA-KK-A5A1-01 14 105405095 105405095 C A AHNAK2 Missense_Mutation p.D5565Y 0.14 possibly_damaging(0.529) TCGA-KK-A5A1-01 14 105409473 105409473 G T AHNAK2 Silent p.A4105A 0.38 TCGA-KK-A5A1-01 14 105418650 105418650 G A AHNAK2 Silent p.L1046L 0.16 TCGA-KK-A5A1-01 14 105954583 105954583 G - CRIP1 Frame_Shift_Del p.G42Afs*? 0.08 TCGA-KK-A5A1-01 14 21852155 21852155 G A SUPT16H 5'UTR 0.12 TCGA-KK-A5A1-01 14 24617597 24617597 G A RNF31 Missense_Mutation p.R157Q 0.23 deleterious(0) probably_damaging(0.964) TCGA-KK-A5A1-01 14 47426763 47426763 C G MDGA2 Missense_Mutation p.A635P 0.21 deleterious(0.01) benign(0.17) TCGA-KK-A5A1-01 14 94395392 94395392 A G FAM181A Missense_Mutation p.H316R 0.21 tolerated(0.08) benign(0.334) TCGA-KK-A5A1-01 15 20874794 20874794 T C NBEAP1 Intron 0.16 TCGA-KK-A5A1-01 15 41192240 41192240 C T VPS18 Silent p.F408F 0.06 TCGA-KK-A5A1-01 15 99901591 99901591 C T LRRC28 Missense_Mutation p.S249L 0.63 tolerated(0.44) benign(0.004) TCGA-KK-A5A1-01 16 20975100 20975100 T C DNAH3 Missense_Mutation p.D3369G 0.04 deleterious(0) probably_damaging(0.996) TCGA-KK-A5A1-01 16 32077613 32077613 G A IGHV3OR16-9 Silent p.K76K 0.08 TCGA-KK-A5A1-01 16 57550233 57550233 T C CCDC102A Missense_Mutation p.K464R 0.10 deleterious(0.05) probably_damaging(0.999) TCGA-KK-A5A1-01 16 75690150 75690150 G A TERF2IP Missense_Mutation p.D281N 0.38 tolerated(0.36) possibly_damaging(0.905) TCGA-KK-A5A1-01 17 37357515 37357517 AAG - RPL19 In_Frame_Del p.K21del 0.16 TCGA-KK-A5A1-01 17 37619371 37619371 G A CDK12 Splice_Site p.X349_splice 0.31 TCGA-KK-A5A1-01 17 37627847 37627860 ACTCACTCAAAGAC - CDK12 Frame_Shift_Del p.T588Ifs*48 0.46 TCGA-KK-A5A1-01 17 39092708 39092708 G A KRT23 Missense_Mutation p.R50W 0.04 tolerated(0.11) possibly_damaging(0.517) TCGA-KK-A5A1-01 17 42333044 42333044 G T SLC4A1 Silent p.G599G 0.11 TCGA-KK-A5A1-01 17 46692051 46692051 C T HOXB8 Missense_Mutation p.V6I 0.21 deleterious(0.03) probably_damaging(0.979) TCGA-KK-A5A1-01 17 48263140 48263140 G A COL1A1 Missense_Mutation p.T1416M 0.15 unknown(0) TCGA-KK-A5A1-01 17 48264042 48264042 G T COL1A1 Missense_Mutation p.T1258N 0.09 unknown(0) TCGA-KK-A5A1-01 17 70119775 70119776 - C SOX9 Frame_Shift_Ins p.E261Rfs*35 0.18 TCGA-KK-A5A1-01 17 7137547 7137547 C T DVL2 Missense_Mutation p.G12E 0.07 deleterious(0.02) unknown(0) TCGA-KK-A5A1-01 17 7842864 7842864 G T CNTROB Nonsense_Mutation p.E321* 0.18 TCGA-KK-A5A1-01 18 12673405 12673405 C A CEP76 Missense_Mutation p.V647F 0.17 deleterious(0) probably_damaging(0.95) TCGA-KK-A5A1-01 18 21110078 21110078 C T C18orf8 Silent p.L527L 0.13 TCGA-KK-A5A1-01 18 56202227 56202227 A T ALPK2 Missense_Mutation p.I1731N 0.15 deleterious(0) probably_damaging(0.976) TCGA-KK-A5A1-01 18 66678240 66678240 A G CCDC102B Missense_Mutation p.T445A 0.17 tolerated(0.19) benign(0.032) TCGA-KK-A5A1-01 18 70209171 70209171 G A CBLN2 Silent p.D75D 0.52 TCGA-KK-A5A1-01 19 10080271 10080271 G A COL5A3 Nonsense_Mutation p.R1360* 0.26 TCGA-KK-A5A1-01 19 14150414 14150414 G C IL27RA Missense_Mutation p.V105L 0.23 deleterious(0.01) possibly_damaging(0.64) TCGA-KK-A5A1-01 19 17835965 17835965 T G MAP1S Silent p.P137P 0.04 TCGA-KK-A5A1-01 19 18709695 18709695 G A CRLF1 Silent p.P138P 0.15 TCGA-KK-A5A1-01 19 38160483 38160483 G A ZNF781 Silent p.L189L 0.15 TCGA-KK-A5A1-01 19 44636284 44636284 A G ZNF225 Missense_Mutation p.H506R 0.11 deleterious(0) probably_damaging(0.958) TCGA-KK-A5A1-01 19 54417821 54417821 A C CACNG7 Missense_Mutation p.E88D 0.12 tolerated(1) benign(0.021) TCGA-KK-A5A1-01 19 58370783 58370783 C T ZNF587 Nonsense_Mutation p.Q335* 0.29 TCGA-KK-A5A1-01 1 110292979 110292979 G A EPS8L3 3'UTR 0.47 TCGA-KK-A5A1-01 1 11907408 11907408 C T NPPA Missense_Mutation p.G71E 0.08 tolerated(0.07) benign(0.124) TCGA-KK-A5A1-01 1 12855601 12855601 C A PRAMEF1 Missense_Mutation p.P294H 0.06 deleterious(0) possibly_damaging(0.81) TCGA-KK-A5A1-01 1 147380242 147380242 T C GJA8 Missense_Mutation p.C54R 0.07 deleterious(0) probably_damaging(0.999) TCGA-KK-A5A1-01 1 151748667 151748667 C T TDRKH Silent p.R374R 0.08 TCGA-KK-A5A1-01 1 152800112 152800112 G T LCE1A Missense_Mutation p.S55I 0.14 deleterious_low_confidence(0) unknown(0) TCGA-KK-A5A1-01 1 158576638 158576638 A G OR10Z1 Missense_Mutation p.N137S 0.29 tolerated(0.83) benign(0.001) TCGA-KK-A5A1-01 1 160784292 160784292 C G LY9 Silent p.L271L 0.27 TCGA-KK-A5A1-01 1 167095768 167095768 G A DUSP27 Missense_Mutation p.R467H 0.08 deleterious(0.02) benign(0.035) TCGA-KK-A5A1-01 1 177909845 177909845 G A SEC16B Missense_Mutation p.A676V 0.18 deleterious(0) probably_damaging(0.951) TCGA-KK-A5A1-01 1 186648456 186648456 G T PTGS2 Missense_Mutation p.T56K 0.06 tolerated(0.43) benign(0) TCGA-KK-A5A1-01 1 190129985 190129985 T A BRINP3 Missense_Mutation p.N333Y 0.30 tolerated(0.07) benign(0.08) TCGA-KK-A5A1-01 1 197032024 197032024 A G F13B Silent p.C76C 0.15 TCGA-KK-A5A1-01 1 206760350 206760350 T C RASSF5 3'UTR 0.18 TCGA-KK-A5A1-01 1 209785550 209785550 C A CAMK1G Silent p.A443A 0.12 TCGA-KK-A5A1-01 1 241713007 241713007 G T KMO Missense_Mutation p.R52I 0.21 deleterious(0) probably_damaging(0.934) TCGA-KK-A5A1-01 1 245852063 245852063 C A KIF26B Silent p.G1926G 0.28 TCGA-KK-A5A1-01 1 27238323 27238323 G T NR0B2 3'UTR 0.10 TCGA-KK-A5A1-01 1 35884163 35884163 C T ZMYM4 Silent p.L1477L 0.07 TCGA-KK-A5A1-01 1 46656007 46656007 C T POMGNT1 Intron 0.10 TCGA-KK-A5A1-01 20 25481559 25481559 C T NINL Missense_Mutation p.D317N 0.08 tolerated(0.07) possibly_damaging(0.578) TCGA-KK-A5A1-01 20 2775056 2775056 C T CPXM1 Missense_Mutation p.R662H 0.18 deleterious(0) probably_damaging(1) TCGA-KK-A5A1-01 20 33337674 33337674 T C NCOA6 Missense_Mutation p.N775S 0.15 benign(0.001) TCGA-KK-A5A1-01 20 33875239 33875239 C T FAM83C Missense_Mutation p.R448H 0.22 tolerated_low_confidence(0.26) benign(0.004) TCGA-KK-A5A1-01 21 31863904 31863904 G A KRTAP19-3 3'UTR 0.21 TCGA-KK-A5A1-01 21 34038327 34038327 C A SYNJ1 Missense_Mutation p.A730S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-KK-A5A1-01 21 34922689 34922689 G - SON Frame_Shift_Del p.P386Hfs*14 0.15 TCGA-KK-A5A1-01 22 22724333 22724333 T C IGLV7-46 Missense_Mutation p.S77P 0.15 TCGA-KK-A5A1-01 22 23742494 23742495 - G ZDHHC8P1 RNA 0.21 TCGA-KK-A5A1-01 22 41282353 41282353 C T XPNPEP3 Missense_Mutation p.P209L 0.40 deleterious(0.03) benign(0.105) TCGA-KK-A5A1-01 22 44681558 44681558 G C KIAA1644 Missense_Mutation p.L117V 0.16 deleterious(0.02) probably_damaging(0.978) TCGA-KK-A5A1-01 2 169417809 169417809 G A CERS6 Silent p.T128T 0.59 TCGA-KK-A5A1-01 2 21228379 21228379 G A APOB Silent p.P3787P 0.47 TCGA-KK-A5A1-01 2 73145426 73145426 G A EMX1 Missense_Mutation p.G149S 0.10 tolerated(0.71) possibly_damaging(0.665) TCGA-KK-A5A1-01 3 119962486 119962486 C T GPR156 Splice_Site p.X78_splice 0.41 TCGA-KK-A5A1-01 3 1363509 1363510 - T CNTN6 Frame_Shift_Ins p.Y315Lfs*19 0.23 TCGA-KK-A5A1-01 3 141011306 141011306 C T ACPL2 Silent p.H234H 0.08 TCGA-KK-A5A1-01 3 167747660 167747660 C G GOLIM4 Missense_Mutation p.Q447H 0.16 deleterious(0.03) benign(0.037) TCGA-KK-A5A1-01 3 170843819 170843819 C T TNIK Missense_Mutation p.R632H 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-KK-A5A1-01 3 4808388 4808388 A - ITPR1 Frame_Shift_Del p.A1894Lfs*8 0.16 TCGA-KK-A5A1-01 4 148786095 148786095 G T ARHGAP10 Missense_Mutation p.E195D 0.24 tolerated(0.26) benign(0.444) TCGA-KK-A5A1-01 4 158257856 158257856 T A GRIA2 Missense_Mutation p.S601T 0.13 deleterious(0) probably_damaging(0.98) TCGA-KK-A5A1-01 4 175898787 175898788 - A ADAM29 Frame_Shift_Ins p.Q707Afs*21 0.11 TCGA-KK-A5A1-01 4 187157946 187157946 G T KLKB1 Missense_Mutation p.D114Y 0.43 deleterious(0) possibly_damaging(0.807) TCGA-KK-A5A1-01 4 23816063 23816063 C T PPARGC1A Missense_Mutation p.G348E 0.35 tolerated(0.12) possibly_damaging(0.902) TCGA-KK-A5A1-01 4 70823024 70823024 G A CSN2 Nonsense_Mutation p.Q215* 0.08 TCGA-KK-A5A1-01 5 102484976 102484976 C T PPIP5K2 Nonsense_Mutation p.R289* 0.16 TCGA-KK-A5A1-01 5 110814199 110814199 G T CAMK4 Missense_Mutation p.K274N 0.20 deleterious(0) probably_damaging(0.982) TCGA-KK-A5A1-01 5 122700259 122700259 T C CEP120 Silent p.A837A 0.18 TCGA-KK-A5A1-01 5 133326754 133326754 G A VDAC1 Missense_Mutation p.T70M 0.13 deleterious(0.05) benign(0.201) TCGA-KK-A5A1-01 5 167995897 167995897 T A PANK3 Missense_Mutation p.L45F 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-KK-A5A1-01 5 179564645 179564645 C T RASGEF1C Missense_Mutation p.R82Q 0.12 tolerated(0.31) benign(0.094) TCGA-KK-A5A1-01 6 143074327 143074327 A G HIVEP2 Silent p.L2420L 0.04 TCGA-KK-A5A1-01 6 163899929 163899929 G T QKI Splice_Site p.X134_splice 0.19 TCGA-KK-A5A1-01 6 33283001 33283001 G A ZBTB22 Missense_Mutation p.R565C 0.11 deleterious(0) probably_damaging(0.996) TCGA-KK-A5A1-01 7 117432774 117432774 C T CTTNBP2 Missense_Mutation p.R159H 0.07 tolerated(0.1) benign(0.033) TCGA-KK-A5A1-01 7 140267046 140267046 T G DENND2A Missense_Mutation p.K540T 0.12 deleterious(0.01) possibly_damaging(0.821) TCGA-KK-A5A1-01 8 104442877 104442877 T C DCAF13 Missense_Mutation p.I373T 0.36 deleterious(0) probably_damaging(0.978) TCGA-KK-A5A1-01 8 52359718 52359718 C A PXDNL Silent p.G457G 0.05 TCGA-KK-A5A1-01 8 62489335 62489335 G A ASPH Missense_Mutation p.A382V 0.38 deleterious(0) probably_damaging(1) TCGA-KK-A5A1-01 8 85799876 85799876 G T RALYL Silent p.L254L 0.12 TCGA-KK-A5A1-01 9 100389704 100389705 - T TSTD2 Frame_Shift_Ins p.K48Efs*26 0.23 TCGA-KK-A5A1-01 9 126783459 126783459 G A LHX2 Missense_Mutation p.R270H 0.08 deleterious(0) probably_damaging(0.998) TCGA-KK-A5A1-01 9 131600404 131600404 C A CCBL1 Nonsense_Mutation p.E122* 0.05 TCGA-KK-A5A1-01 9 139391807 139391807 C T NOTCH1 Silent p.P2128P 0.06 TCGA-KK-A5A1-01 9 21367783 21367783 G T IFNA13 Missense_Mutation p.P76Q 0.12 tolerated(1) benign(0.001) TCGA-KK-A5A1-01 9 311964 311964 G A DOCK8 Missense_Mutation p.R180H 0.54 tolerated(0.09) benign(0.001) TCGA-KK-A5A1-01 X 155119202 155119202 T C VAMP7 Missense_Mutation p.F25L 0.18 deleterious(0.01) probably_damaging(0.927) TCGA-KK-A6DY-01 11 8737335 8737335 G A ST5 Missense_Mutation p.R554C 0.07 deleterious(0.05) probably_damaging(0.964) TCGA-KK-A6DY-01 12 19436440 19436440 C T PLEKHA5 Nonsense_Mutation p.Q514* 0.23 TCGA-KK-A6DY-01 12 49391578 49391578 C T DDN Missense_Mutation p.A361T 0.20 tolerated_low_confidence(0.21) benign(0.012) TCGA-KK-A6DY-01 12 54903702 54903702 G A NCKAP1L Missense_Mutation p.R223H 0.04 deleterious(0) probably_damaging(0.999) TCGA-KK-A6DY-01 13 28608023 28608023 C G FLT3 Splice_Site p.X648_splice 0.22 TCGA-KK-A6DY-01 14 30068924 30068924 T C PRKD1 Missense_Mutation p.M669V 0.06 deleterious(0.02) possibly_damaging(0.61) TCGA-KK-A6DY-01 14 70177825 70177825 T G KIAA0247 3'UTR 0.29 TCGA-KK-A6DY-01 15 45399594 45399594 T C DUOX2 Missense_Mutation p.I548V 0.25 deleterious(0.01) benign(0.034) TCGA-KK-A6DY-01 15 64706363 64706363 C T TRIP4 Missense_Mutation p.P375S 0.10 tolerated(0.67) benign(0.002) TCGA-KK-A6DY-01 15 74336765 74336765 C T PML Missense_Mutation p.R689W 0.06 tolerated(0.07) benign(0.006) TCGA-KK-A6DY-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.31 tolerated(0.11) benign(0.308) TCGA-KK-A6DY-01 19 42187829 42187829 T C CEACAM7 Missense_Mutation p.N198S 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-KK-A6DY-01 19 54137875 54137875 A G DPRX Missense_Mutation p.Y40C 0.14 deleterious(0) probably_damaging(0.999) TCGA-KK-A6DY-01 1 157559034 157559034 G A FCRL4 Silent p.G89G 0.06 TCGA-KK-A6DY-01 1 220253161 220253161 G A BPNT1 Missense_Mutation p.R10W 0.09 deleterious(0) probably_damaging(0.998) TCGA-KK-A6DY-01 1 40776809 40776809 C A COL9A2 Missense_Mutation p.G196C 0.18 deleterious(0) probably_damaging(0.991) TCGA-KK-A6DY-01 1 46527681 46527681 C T PIK3R3 Silent p.E228E 0.12 TCGA-KK-A6DY-01 1 47755173 47755173 A T STIL Nonsense_Mutation p.C319* 0.21 TCGA-KK-A6DY-01 20 24523910 24523910 G A SYNDIG1 Silent p.P59P 0.06 TCGA-KK-A6DY-01 22 26304380 26304380 G A MYO18B Missense_Mutation p.R1747H 0.23 tolerated(0.08) possibly_damaging(0.66) TCGA-KK-A6DY-01 2 50765580 50765580 G - NRXN1 Frame_Shift_Del p.Q692Kfs*17 0.11 TCGA-KK-A6DY-01 3 151012973 151012973 G T GPR87 Missense_Mutation p.H21N 0.17 tolerated(0.49) benign(0) TCGA-KK-A6DY-01 3 41268787 41268787 G A CTNNB1 Missense_Mutation p.R342K 0.10 deleterious(0) possibly_damaging(0.718) TCGA-KK-A6DY-01 3 52939178 52939178 C T SFMBT1 Missense_Mutation p.A859T 0.17 deleterious(0) possibly_damaging(0.859) TCGA-KK-A6DY-01 4 1016153 1016153 C T FGFRL1 Missense_Mutation p.P81L 0.23 tolerated(0.09) benign(0.009) TCGA-KK-A6DY-01 4 152048836 152048836 C T SH3D19 Silent p.P730P 0.12 TCGA-KK-A6DY-01 5 140589806 140589806 G A PCDHB12 Missense_Mutation p.D443N 0.12 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-KK-A6DY-01 6 35773472 35773472 G A LHFPL5 Missense_Mutation p.E9K 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-KK-A6DY-01 6 39877613 39877613 C A MOCS1 Silent p.G356G 0.22 TCGA-KK-A6DY-01 8 131861901 131861901 C T ADCY8 Missense_Mutation p.V787I 0.12 tolerated(0.33) benign(0.003) TCGA-KK-A6DY-01 8 144732272 144732272 G T ZNF623 Missense_Mutation p.G77V 0.30 deleterious(0.03) possibly_damaging(0.465) TCGA-KK-A6DY-01 8 2832109 2832109 G A CSMD1 Silent p.A2868A 0.17 TCGA-KK-A6DY-01 8 68255601 68255601 G A ARFGEF1 5'UTR 0.34 TCGA-KK-A6DY-01 9 137642640 137642640 G A COL5A1 Missense_Mutation p.R525Q 0.15 probably_damaging(0.984) TCGA-KK-A6DY-01 X 132159947 132159947 G T USP26 Missense_Mutation p.H768N 0.10 tolerated(0.11) possibly_damaging(0.776) TCGA-KK-A6E0-01 10 102732631 102732631 C T SEMA4G 5'UTR 0.29 TCGA-KK-A6E0-01 11 26725366 26725366 T C SLC5A12 Silent p.T218T 0.35 TCGA-KK-A6E0-01 11 60702907 60702907 C T TMEM132A Missense_Mutation p.P675S 0.30 deleterious(0.04) benign(0.253) TCGA-KK-A6E0-01 12 110630424 110630424 G - IFT81 Frame_Shift_Del p.K492Nfs*17 0.26 TCGA-KK-A6E0-01 12 32369197 32369197 T C BICD1 Missense_Mutation p.F77S 0.07 tolerated(0.08) benign(0.405) TCGA-KK-A6E0-01 13 34392356 34392356 G A RFC3 Missense_Mutation p.G14E 0.20 tolerated(0.21) benign(0.002) TCGA-KK-A6E0-01 16 624161 624161 C A PIGQ Missense_Mutation p.S29R 0.09 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-KK-A6E0-01 17 39672161 39672161 G A KRT15 Silent p.I334I 0.35 TCGA-KK-A6E0-01 17 47696426 47696426 A T SPOP Missense_Mutation p.F133I 0.27 deleterious(0.05) probably_damaging(0.998) TCGA-KK-A6E0-01 17 5392653 5392653 T - MIS12 Frame_Shift_Del p.F158Sfs*21 0.24 TCGA-KK-A6E0-01 19 4054988 4054988 G A ZBTB7A Silent p.S81S 0.48 TCGA-KK-A6E0-01 19 51217085 51217085 G A SHANK1 Silent p.A254A 0.11 TCGA-KK-A6E0-01 19 52580282 52580282 C T ZNF841 Missense_Mutation p.C24Y 0.28 deleterious(0.03) possibly_damaging(0.874) TCGA-KK-A6E0-01 1 183617689 183617689 A T APOBEC4 Silent p.G76G 0.11 TCGA-KK-A6E0-01 1 186064439 186064439 C T HMCN1 Silent p.T3453T 0.18 TCGA-KK-A6E0-01 1 216260090 216260090 C T USH2A Missense_Mutation p.R1653Q 0.38 benign(0.001) TCGA-KK-A6E0-01 21 34861715 34861715 T C DNAJC28 5'UTR 0.32 TCGA-KK-A6E0-01 22 18178954 18178954 T - BCL2L13 Frame_Shift_Del p.H146Mfs*22 0.14 TCGA-KK-A6E0-01 22 40816928 40816928 G C MKL1 Silent p.L268L 0.31 TCGA-KK-A6E0-01 22 44386201 44386201 G - SAMM50 Frame_Shift_Del p.A428Pfs*39 0.22 TCGA-KK-A6E0-01 2 112813329 112813329 A G TMEM87B Missense_Mutation p.N54S 0.30 tolerated(0.79) benign(0.003) TCGA-KK-A6E0-01 2 136569967 136569967 C T LCT Missense_Mutation p.G756D 0.07 deleterious(0) probably_damaging(0.994) TCGA-KK-A6E0-01 2 141609267 141609267 C T LRP1B Silent p.A1555A 0.40 TCGA-KK-A6E0-01 2 20463106 20463106 A C PUM2 Silent p.P691P 0.31 TCGA-KK-A6E0-01 2 239353281 239353281 C T ASB1 Silent p.L265L 0.31 TCGA-KK-A6E0-01 3 138669318 138669323 TGAGCG - C3orf72 In_Frame_Del p.E147_R148del 0.33 TCGA-KK-A6E0-01 3 193002807 193002807 C A ATP13A5 Missense_Mutation p.S1041I 0.28 deleterious(0) probably_damaging(0.99) TCGA-KK-A6E0-01 4 74351740 74351740 C T AFM Silent p.P144P 0.31 TCGA-KK-A6E0-01 5 142264887 142264887 G C ARHGAP26 Missense_Mutation p.E137Q 0.23 tolerated(0.09) possibly_damaging(0.728) TCGA-KK-A6E0-01 5 156590271 156590271 G T FAM71B Missense_Mutation p.N335K 0.28 tolerated(0.31) benign(0.298) TCGA-KK-A6E0-01 5 43039709 43039709 C T ANXA2R Missense_Mutation p.R147H 0.25 tolerated(0.13) benign(0.272) TCGA-KK-A6E0-01 6 151687732 151687732 G A ZBTB2 Nonsense_Mutation p.R157* 0.30 TCGA-KK-A6E0-01 7 120768459 120768459 A C CPED1 Silent p.L442L 0.30 TCGA-KK-A6E0-01 8 117878928 117878939 AGAGGCCCTCTT - RAD21 In_Frame_Del p.R11_L14del 0.28 TCGA-KK-A6E0-01 8 67579179 67579179 C A VCPIP1 Silent p.P5P 0.24 TCGA-KK-A6E0-01 9 135926319 135926319 T C GTF3C5 Missense_Mutation p.V241A 0.21 tolerated(0.28) benign(0.003) TCGA-KK-A6E1-01 10 26377234 26377234 G T MYO3A Nonsense_Mutation p.G488* 0.35 TCGA-KK-A6E1-01 10 52596043 52596043 C T A1CF Missense_Mutation p.S140N 0.45 deleterious(0) probably_damaging(0.972) TCGA-KK-A6E1-01 10 89692959 89692960 - A PTEN Frame_Shift_Ins p.Q149Tfs*31 0.35 TCGA-KK-A6E1-01 12 51737623 51737623 G A CELA1 Silent p.Y38Y 0.33 TCGA-KK-A6E1-01 13 47409098 47409099 - T HTR2A Frame_Shift_Ins p.N431Efs*11 0.51 TCGA-KK-A6E1-01 13 52439722 52439722 T C CCDC70 Missense_Mutation p.W70R 0.38 tolerated(0.66) benign(0.044) TCGA-KK-A6E1-01 13 99127163 99127163 G T STK24 Missense_Mutation p.T182K 0.29 deleterious(0) possibly_damaging(0.856) TCGA-KK-A6E1-01 14 25043658 25043658 C A CTSG Silent p.L129L 0.16 TCGA-KK-A6E1-01 15 51975311 51975311 A G SCG3 Silent p.T57T 0.46 TCGA-KK-A6E1-01 17 48678110 48678110 G A CACNA1G Silent p.A1238A 0.40 TCGA-KK-A6E1-01 1 158655065 158655065 T A SPTA1 Missense_Mutation p.T33S 0.34 tolerated(0.84) benign(0.001) TCGA-KK-A6E1-01 1 247695157 247695157 G A OR2C3 Silent p.Y219Y 0.06 TCGA-KK-A6E1-01 1 47533298 47533298 T C CYP4Z1 Missense_Mutation p.F46L 0.42 deleterious(0) possibly_damaging(0.483) TCGA-KK-A6E1-01 20 33567504 33567504 C T MYH7B Missense_Mutation p.P122L 0.38 probably_damaging(1) TCGA-KK-A6E1-01 22 44234801 44234801 T A SULT4A1 Missense_Mutation p.M152L 0.33 tolerated(0.07) benign(0.023) TCGA-KK-A6E1-01 2 109106455 109106455 C T GCC2 Missense_Mutation p.A1405V 0.34 deleterious(0) benign(0.296) TCGA-KK-A6E1-01 2 125521715 125521715 G A CNTNAP5 Missense_Mutation p.E841K 0.34 deleterious(0) probably_damaging(0.999) TCGA-KK-A6E1-01 2 152410424 152410424 C T NEB Missense_Mutation p.R6515H 0.42 probably_damaging(0.989) TCGA-KK-A6E1-01 2 219127538 219127538 G A GPBAR1 Missense_Mutation p.A31T 0.32 tolerated(0.18) probably_damaging(0.999) TCGA-KK-A6E1-01 2 230271991 230271991 G T DNER Missense_Mutation p.S560R 0.06 tolerated(0.08) possibly_damaging(0.551) TCGA-KK-A6E1-01 2 80874771 80874771 C T CTNNA2 Missense_Mutation p.T831M 0.39 deleterious(0) probably_damaging(1) TCGA-KK-A6E1-01 3 122274491 122274491 C T PARP9 Missense_Mutation p.G211E 0.16 tolerated(1) benign(0.002) TCGA-KK-A6E1-01 3 123049810 123049810 C T ADCY5 Silent p.S524S 0.18 TCGA-KK-A6E1-01 3 47038461 47038461 C A NBEAL2 Silent p.I858I 0.20 TCGA-KK-A6E1-01 5 141336228 141336228 G C PCDH12 Missense_Mutation p.L397V 0.05 tolerated(0.49) possibly_damaging(0.499) TCGA-KK-A6E1-01 5 98115306 98115306 A C RGMB Missense_Mutation p.Q94H 0.44 tolerated(0.08) possibly_damaging(0.839) TCGA-KK-A6E1-01 7 5363890 5363890 C T TNRC18 Missense_Mutation p.E2133K 0.17 benign(0.305) TCGA-KK-A6E1-01 8 30701886 30701886 C T TEX15 Missense_Mutation p.D1550N 0.34 tolerated(0.29) benign(0.006) TCGA-KK-A6E1-01 9 34657044 34657044 G A IL11RA Missense_Mutation p.R115H 0.29 tolerated(0.56) possibly_damaging(0.886) TCGA-KK-A6E1-01 X 117775256 117775256 T C DOCK11 Silent p.T1416T 0.46 TCGA-KK-A6E2-01 10 118307881 118307881 G A PNLIP Missense_Mutation p.A71T 0.34 tolerated(0.15) benign(0.006) TCGA-KK-A6E2-01 10 12129647 12129647 C T DHTKD1 Silent p.S212S 0.34 TCGA-KK-A6E2-01 10 125506294 125506294 G A CPXM2 Nonsense_Mutation p.R753* 0.08 TCGA-KK-A6E2-01 10 48389662 48389662 C T RBP3 Missense_Mutation p.E406K 0.08 tolerated(0.13) benign(0.008) TCGA-KK-A6E2-01 11 111957585 111957585 C A SDHD 5'UTR 0.12 TCGA-KK-A6E2-01 11 6649894 6649894 G C DCHS1 Missense_Mutation p.P1777A 0.34 deleterious(0.02) possibly_damaging(0.688) TCGA-KK-A6E2-01 11 70319509 70319509 C T SHANK2 Missense_Mutation p.R1673Q 0.16 tolerated(0.1) benign(0.238) TCGA-KK-A6E2-01 11 78381219 78381219 G A TENM4 Silent p.Y2057Y 0.08 TCGA-KK-A6E2-01 11 94759491 94759491 C T KDM4E Missense_Mutation p.P257L 0.25 deleterious(0) probably_damaging(1) TCGA-KK-A6E2-01 12 106838328 106838328 G A POLR3B Silent p.P681P 0.31 TCGA-KK-A6E2-01 12 123380621 123380621 G C VPS37B 5'UTR 0.44 TCGA-KK-A6E2-01 12 15742420 15742420 G A PTPRO Missense_Mutation p.A1148T 0.30 deleterious(0) possibly_damaging(0.887) TCGA-KK-A6E2-01 14 21511516 21511516 A G RNASE7 Missense_Mutation p.K122R 0.10 tolerated(0.27) benign(0.005) TCGA-KK-A6E2-01 14 77718143 77718143 G A TMEM63C Missense_Mutation p.A684T 0.25 tolerated(0.07) benign(0.002) TCGA-KK-A6E2-01 15 57565238 57565238 G A TCF12 Missense_Mutation p.E586K 0.32 deleterious(0.01) probably_damaging(0.993) TCGA-KK-A6E2-01 16 22132353 22132353 C A VWA3A Missense_Mutation p.A394D 0.07 tolerated(0.28) benign(0.001) TCGA-KK-A6E2-01 16 57468061 57468061 T A CIAPIN1 Missense_Mutation p.S151C 0.13 tolerated(0.08) benign(0.01) TCGA-KK-A6E2-01 16 58149203 58149203 G C C16orf80 Silent p.G145G 0.36 TCGA-KK-A6E2-01 16 67199716 67199716 C G HSF4 Silent p.G109G 0.10 TCGA-KK-A6E2-01 17 25950427 25950427 A G KSR1 3'UTR 0.24 TCGA-KK-A6E2-01 17 73780852 73780852 G - UNK 5'UTR 0.19 TCGA-KK-A6E2-01 17 76496390 76496390 G T DNAH17 Nonsense_Mutation p.Y1865* 0.16 TCGA-KK-A6E2-01 17 8526221 8526221 T G MYH10 Missense_Mutation p.Y115S 0.35 probably_damaging(0.997) TCGA-KK-A6E2-01 18 47311571 47311571 A C ACAA2 Missense_Mutation p.L369V 0.05 deleterious(0) possibly_damaging(0.872) TCGA-KK-A6E2-01 19 15662136 15662136 G T CYP4F22 Nonsense_Mutation p.E484* 0.47 TCGA-KK-A6E2-01 19 15794476 15794476 G A CYP4F12 Missense_Mutation p.R274Q 0.26 deleterious(0.01) probably_damaging(0.942) TCGA-KK-A6E2-01 19 19431287 19431287 T A SUGP1 Missense_Mutation p.N7Y 0.24 deleterious_low_confidence(0.02) benign(0.425) TCGA-KK-A6E2-01 19 42392871 42392871 C T ARHGEF1 Missense_Mutation p.R69W 0.42 deleterious(0.01) possibly_damaging(0.701) TCGA-KK-A6E2-01 19 49299745 49299745 G A BCAT2 Silent p.P360P 0.29 TCGA-KK-A6E2-01 19 49387100 49387100 C T TULP2 Missense_Mutation p.V396I 0.16 tolerated(0.2) benign(0.001) TCGA-KK-A6E2-01 19 51563757 51563757 G A KLK13 Missense_Mutation p.R58W 0.23 deleterious(0) benign(0.006) TCGA-KK-A6E2-01 19 5785194 5785194 G A DUS3L 3'UTR 0.60 TCGA-KK-A6E2-01 19 9064272 9064272 G A MUC16 Missense_Mutation p.P7725L 0.06 unknown(0) TCGA-KK-A6E2-01 1 117484587 117484587 C T PTGFRN Silent p.D100D 0.18 TCGA-KK-A6E2-01 1 156704062 156704062 C T RRNAD1 Nonsense_Mutation p.Q300* 0.15 TCGA-KK-A6E2-01 1 220170573 220170573 G A EPRS Missense_Mutation p.R765C 0.36 deleterious(0.01) possibly_damaging(0.545) TCGA-KK-A6E2-01 22 30735202 30735202 G A SF3A1 Missense_Mutation p.R472W 0.43 deleterious(0) probably_damaging(0.995) TCGA-KK-A6E2-01 2 68765198 68765198 C T APLF Silent p.G333G 0.10 TCGA-KK-A6E2-01 3 130289977 130289977 G A COL6A6 Missense_Mutation p.R906H 0.20 deleterious(0) probably_damaging(1) TCGA-KK-A6E2-01 3 44700678 44700678 C A ZNF35 Missense_Mutation p.Q275K 0.06 deleterious(0) possibly_damaging(0.872) TCGA-KK-A6E2-01 5 145664215 145664215 C T RBM27 Missense_Mutation p.R1007C 0.41 deleterious(0) probably_damaging(0.997) TCGA-KK-A6E2-01 7 110764636 110764637 - A LRRN3 Frame_Shift_Ins p.C606Mfs*12 0.22 TCGA-KK-A6E2-01 7 7613322 7613322 A G MIOS Missense_Mutation p.T406A 0.06 tolerated(0.75) benign(0.122) TCGA-KK-A6E2-01 8 3141832 3141832 G A CSMD1 Silent p.H1329H 0.08 TCGA-KK-A6E2-01 8 53079446 53079446 C G ST18 Silent p.S390S 0.11 TCGA-KK-A6E2-01 8 55538088 55538088 T C RP1 Missense_Mutation p.V549A 0.34 tolerated(0.19) benign(0.021) TCGA-KK-A6E2-01 8 77616490 77616490 G A ZFHX4 Missense_Mutation p.R56H 0.10 possibly_damaging(0.715) TCGA-KK-A6E2-01 8 85441793 85441793 C G RALYL Silent p.V92V 0.07 TCGA-KK-A6E2-01 9 4834198 4834198 G A RCL1 Missense_Mutation p.V173M 0.50 deleterious(0.01) possibly_damaging(0.694) TCGA-KK-A6E2-01 X 70465273 70465273 G A ZMYM3 Nonsense_Mutation p.R975* 0.48 TCGA-KK-A6E3-01 10 26505785 26505785 G A GAD2 Missense_Mutation p.G16D 0.06 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-KK-A6E3-01 11 111745901 111745901 A G FDXACB1 Silent p.V540V 0.06 TCGA-KK-A6E3-01 11 33308014 33308014 T C HIPK3 Silent p.S18S 0.07 TCGA-KK-A6E3-01 11 58979777 58979777 T G MPEG1 Silent p.R188R 0.07 TCGA-KK-A6E3-01 12 13724865 13724865 G A GRIN2B Missense_Mutation p.R682C 0.10 deleterious(0) probably_damaging(0.999) TCGA-KK-A6E3-01 12 1889767 1889767 A G ADIPOR2 Missense_Mutation p.Y205C 0.09 tolerated(0.12) benign(0.289) TCGA-KK-A6E3-01 12 49416433 49416433 G C KMT2D Nonsense_Mutation p.Y5426* 0.18 TCGA-KK-A6E3-01 12 50041125 50041125 G T FMNL3 Silent p.R935R 0.06 TCGA-KK-A6E3-01 12 56549344 56549344 G C MYL6B Missense_Mutation p.G163A 0.05 tolerated(0.06) probably_damaging(0.995) TCGA-KK-A6E3-01 12 56711419 56711419 C T PAN2 Missense_Mutation p.V1195I 0.09 deleterious_low_confidence(0.04) benign(0.076) TCGA-KK-A6E3-01 12 57112089 57112089 G A NACA Intron 0.05 TCGA-KK-A6E3-01 13 39586310 39586310 C T PROSER1 Silent p.P874P 0.06 TCGA-KK-A6E3-01 14 23524544 23524544 G A CDH24 Missense_Mutation p.R74W 0.06 deleterious(0) probably_damaging(1) TCGA-KK-A6E3-01 14 51372228 51372228 G A PYGL Missense_Mutation p.S809L 0.10 tolerated(0.08) possibly_damaging(0.903) TCGA-KK-A6E3-01 15 69222988 69222988 C T SPESP1 5'UTR 0.07 TCGA-KK-A6E3-01 15 75985564 75985564 G A CSPG4 Silent p.F33F 0.22 TCGA-KK-A6E3-01 16 48218517 48218517 G A ABCC11 Missense_Mutation p.A1031V 0.05 tolerated(0.28) benign(0.004) TCGA-KK-A6E3-01 16 74490581 74490581 T C GLG1 Missense_Mutation p.N1113S 0.17 tolerated(1) benign(0.007) TCGA-KK-A6E3-01 18 14105529 14105529 T C ZNF519 Missense_Mutation p.Q337R 0.07 tolerated(0.77) benign(0.044) TCGA-KK-A6E3-01 19 46281067 46281067 C T DMPK Missense_Mutation p.G257D 0.04 tolerated(0.44) possibly_damaging(0.751) TCGA-KK-A6E3-01 1 153958656 153958656 C T RAB13 Silent p.V19V 0.22 TCGA-KK-A6E3-01 1 185939492 185939492 A T HMCN1 Silent p.T746T 0.04 TCGA-KK-A6E3-01 1 207818584 207818584 G T CR1L Silent p.A2A 0.05 TCGA-KK-A6E3-01 20 48525010 48525010 T G SPATA2 Silent p.S6S 0.09 TCGA-KK-A6E3-01 21 38511002 38511002 A C TTC3 Silent p.I549I 0.04 TCGA-KK-A6E3-01 21 42843790 42843791 - G TMPRSS2 Frame_Shift_Ins p.K377Qfs*6 0.09 TCGA-KK-A6E3-01 22 17589607 17589607 G A IL17RA Missense_Mutation p.V500I 0.12 tolerated(1) benign(0.038) TCGA-KK-A6E3-01 2 141607757 141607757 T A LRP1B Missense_Mutation p.E1618V 0.09 possibly_damaging(0.728) TCGA-KK-A6E3-01 2 238274427 238274427 G A COL6A3 Missense_Mutation p.R1918C 0.05 probably_damaging(0.943) TCGA-KK-A6E3-01 3 121192246 121192246 A T POLQ Missense_Mutation p.I2165N 0.08 tolerated(0.9) benign(0) TCGA-KK-A6E3-01 3 121206355 121206355 A G POLQ Missense_Mutation p.L1808S 0.07 deleterious(0.02) benign(0.1) TCGA-KK-A6E3-01 3 146311885 146311885 T C PLSCR5 Missense_Mutation p.N92S 0.17 tolerated(0.13) probably_damaging(0.969) TCGA-KK-A6E3-01 4 148555575 148555575 T - TMEM184C Frame_Shift_Del p.V436Gfs*32 0.08 TCGA-KK-A6E3-01 4 159092350 159092350 G A FAM198B Missense_Mutation p.L60F 0.05 tolerated(0.62) possibly_damaging(0.765) TCGA-KK-A6E3-01 4 68619905 68619905 G A GNRHR Missense_Mutation p.A50V 0.20 deleterious(0.04) benign(0.005) TCGA-KK-A6E3-01 5 1065403 1065403 A G SLC12A7 Missense_Mutation p.F811S 0.05 deleterious(0.02) probably_damaging(0.974) TCGA-KK-A6E3-01 5 131544974 131544974 A G P4HA2 Silent p.L254L 0.03 TCGA-KK-A6E3-01 5 54420671 54420671 C T CDC20B Missense_Mutation p.G392D 0.04 tolerated(0.15) benign(0.011) TCGA-KK-A6E3-01 6 100390958 100390958 G A MCHR2 Missense_Mutation p.R152W 0.06 tolerated(0.18) possibly_damaging(0.803) TCGA-KK-A6E3-01 6 26271485 26271485 C A HIST1H3G Missense_Mutation p.R43L 0.05 deleterious_low_confidence(0) benign(0.223) TCGA-KK-A6E3-01 7 100363150 100363150 C T ZAN Silent p.C1481C 0.18 TCGA-KK-A6E3-01 7 100677621 100677621 C A MUC17 Missense_Mutation p.T975N 0.03 possibly_damaging(0.892) TCGA-KK-A6E3-01 7 130143791 130143791 C - MEST Frame_Shift_Del p.P282Hfs*5 0.12 TCGA-KK-A6E3-01 7 20444317 20444317 G A ITGB8 Missense_Mutation p.C585Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-KK-A6E3-01 7 88956732 88956732 A C ZNF804B Missense_Mutation p.Q108H 0.05 deleterious(0) probably_damaging(0.998) TCGA-KK-A6E3-01 8 14412372 14412372 G T SGCZ Missense_Mutation p.Q35K 0.04 tolerated(0.39) benign(0.152) TCGA-KK-A6E3-01 8 6312713 6312713 C G MCPH1 Missense_Mutation p.D625E 0.08 tolerated(1) benign(0) TCGA-KK-A6E3-01 9 115759947 115759947 C T ZNF883 RNA 0.27 TCGA-KK-A6E4-01 10 122662580 122662580 G T WDR11 Nonsense_Mutation p.E923* 0.15 TCGA-KK-A6E4-01 10 75557796 75557796 G A ZSWIM8 Missense_Mutation p.R1307H 0.18 deleterious(0) probably_damaging(0.997) TCGA-KK-A6E4-01 10 85962835 85962835 G A CDHR1 Missense_Mutation p.V247M 0.10 deleterious(0.03) possibly_damaging(0.49) TCGA-KK-A6E4-01 11 55798207 55798207 G A OR5AS1 Missense_Mutation p.A105T 0.31 tolerated(0.09) benign(0.295) TCGA-KK-A6E4-01 12 76740974 76740974 A C BBS10 Missense_Mutation p.I264S 0.12 deleterious(0) possibly_damaging(0.832) TCGA-KK-A6E4-01 13 32818263 32818263 G A FRY Missense_Mutation p.V2258I 0.21 tolerated(0.44) benign(0.002) TCGA-KK-A6E4-01 14 20389698 20389698 T A OR4K5 Silent p.I311I 0.45 TCGA-KK-A6E4-01 14 95909521 95909521 C T SYNE3 Missense_Mutation p.D628N 0.36 deleterious(0.02) possibly_damaging(0.631) TCGA-KK-A6E4-01 15 80873662 80873662 C - ARNT2 Frame_Shift_Del p.Y613Tfs*214 0.13 TCGA-KK-A6E4-01 17 18023246 18023246 G A MYO15A Missense_Mutation p.V378I 0.33 benign(0.021) TCGA-KK-A6E4-01 19 41386471 41386471 T G CYP2A7 Silent p.R136R 0.11 TCGA-KK-A6E4-01 19 50926944 50926944 T G SPIB Missense_Mutation p.L141R 0.36 deleterious(0) probably_damaging(0.998) TCGA-KK-A6E4-01 1 12726653 12726653 C T AADACL4 Silent p.H377H 0.31 TCGA-KK-A6E4-01 1 158618311 158618311 G T SPTA1 Silent p.P1234P 0.35 TCGA-KK-A6E4-01 1 160099088 160099088 T C ATP1A2 Silent p.A453A 0.11 TCGA-KK-A6E4-01 1 231155559 231155559 C T FAM89A 3'UTR 0.33 TCGA-KK-A6E4-01 1 45307636 45307636 C T PTCH2 Missense_Mutation p.G50R 0.49 tolerated(0.3) benign(0.001) TCGA-KK-A6E4-01 1 47364570 47364570 C T CYP4Z2P RNA 0.19 TCGA-KK-A6E4-01 1 94054885 94054885 T G BCAR3 Missense_Mutation p.K193T 0.07 deleterious(0.02) probably_damaging(0.989) TCGA-KK-A6E4-01 22 19789726 19789726 G T GNB1L Missense_Mutation p.S177Y 0.16 tolerated(0.23) benign(0.322) TCGA-KK-A6E4-01 22 21083999 21083999 C A PI4KA Missense_Mutation p.G1470V 0.42 tolerated(0.05) benign(0.14) TCGA-KK-A6E4-01 22 24717686 24717686 G A SPECC1L Silent p.L246L 0.21 TCGA-KK-A6E4-01 22 39709836 39709836 A C RPL3 Intron 0.18 TCGA-KK-A6E4-01 2 176965063 176965063 G A HOXD12 Silent p.A178A 0.29 TCGA-KK-A6E4-01 2 179393601 179393601 A C TTN Nonsense_Mutation p.L35626* 0.31 TCGA-KK-A6E4-01 2 39250208 39250208 C T SOS1 Missense_Mutation p.G454E 0.46 deleterious(0.02) probably_damaging(0.947) TCGA-KK-A6E4-01 3 127399141 127399141 G A ABTB1 Silent p.A420A 0.24 TCGA-KK-A6E4-01 3 53815611 53815611 A G CACNA1D Missense_Mutation p.N1590S 0.16 deleterious(0.04) probably_damaging(0.991) TCGA-KK-A6E4-01 4 85699758 85699758 G A WDFY3 Silent p.I1472I 0.41 TCGA-KK-A6E4-01 5 140229523 140229523 C T PCDHA9 Silent p.D481D 0.29 TCGA-KK-A6E4-01 5 154270986 154270986 G C GEMIN5 Silent p.L1359L 0.05 TCGA-KK-A6E4-01 5 60240872 60240872 C T ERCC8 5'UTR 0.28 TCGA-KK-A6E4-01 6 41908118 41908118 C A CCND3 Missense_Mutation p.R135L 0.39 tolerated(0.23) benign(0.002) TCGA-KK-A6E4-01 6 66205285 66205285 C T EYS Missense_Mutation p.V7I 0.25 tolerated_low_confidence(0.92) benign(0) TCGA-KK-A6E4-01 6 86329033 86329033 T A SYNCRIP Nonsense_Mutation p.K371* 0.05 TCGA-KK-A6E4-01 6 88173768 88173768 G A C6ORF165 Missense_Mutation p.V557I 0.38 tolerated(0.14) benign(0.15) TCGA-KK-A6E4-01 7 1484421 1484421 C T MICALL2 Missense_Mutation p.G429S 0.08 tolerated(1) benign(0.002) TCGA-KK-A6E4-01 7 40900013 40900013 T C SUGCT Missense_Mutation p.Y451H 0.03 deleterious(0.02) probably_damaging(0.983) TCGA-KK-A6E4-01 7 6803699 6803699 C T RSPH10B2 Silent p.I180I 0.14 TCGA-KK-A6E4-01 7 79842101 79842101 A G GNAI1 Missense_Mutation p.I264V 0.47 tolerated(0.12) benign(0.031) TCGA-KK-A6E4-01 7 88964976 88964976 G A ZNF804B Missense_Mutation p.G894R 0.35 tolerated(0.52) benign(0.139) TCGA-KK-A6E4-01 8 117868410 117868410 A T RAD21 Missense_Mutation p.I311K 0.37 tolerated(0.06) benign(0.316) TCGA-KK-A6E4-01 8 28573785 28573785 G A EXTL3 Missense_Mutation p.G70E 0.56 tolerated(0.89) benign(0.003) TCGA-KK-A6E4-01 8 28573786 28573786 G A EXTL3 Silent p.G70G 0.57 TCGA-KK-A6E4-01 8 68105709 68105709 G A CSPP1 Missense_Mutation p.R1109H 0.14 tolerated(0.58) benign(0.001) TCGA-KK-A6E4-01 9 26926460 26926460 C T PLAA Missense_Mutation p.E222K 0.43 tolerated(0.18) benign(0.017) TCGA-KK-A6E4-01 X 37948747 37948747 G A SYTL5 Silent p.R246R 0.12 TCGA-KK-A6E5-01 12 101720875 101720875 A G UTP20 Missense_Mutation p.M1020V 0.36 deleterious(0) probably_damaging(0.92) TCGA-KK-A6E5-01 12 49434307 49434307 G A KMT2D Nonsense_Mutation p.Q2416* 0.11 TCGA-KK-A6E5-01 12 69968695 69968695 C G FRS2 Missense_Mutation p.S496C 0.17 deleterious(0) possibly_damaging(0.733) TCGA-KK-A6E5-01 12 77202835 77202835 G A ZDHHC17 Silent p.S111S 0.08 TCGA-KK-A6E5-01 12 91449954 91449954 C A KERA Missense_Mutation p.W35C 0.16 deleterious(0.03) possibly_damaging(0.497) TCGA-KK-A6E5-01 14 45693538 45693538 A - MIS18BP1 Frame_Shift_Del p.L751* 0.22 TCGA-KK-A6E5-01 17 18874966 18874966 G A FAM83G Silent p.S726S 0.08 TCGA-KK-A6E5-01 1 169839411 169839411 T G SCYL3 Missense_Mutation p.I204L 0.12 tolerated(0.79) benign(0.006) TCGA-KK-A6E5-01 1 28598206 28598206 A C SESN2 Missense_Mutation p.S60R 0.07 tolerated(0.21) benign(0.024) TCGA-KK-A6E5-01 1 43830879 43830879 A T ELOVL1 Missense_Mutation p.L72H 0.32 deleterious(0) probably_damaging(0.939) TCGA-KK-A6E5-01 1 79107509 79107509 A G IFI44L 3'UTR 0.06 TCGA-KK-A6E5-01 21 39755838 39755838 G A ERG Silent p.G316G 0.08 TCGA-KK-A6E5-01 2 233655777 233655777 A T GIGYF2 Missense_Mutation p.E352D 0.06 probably_damaging(0.989) TCGA-KK-A6E5-01 2 29268261 29268261 A T FAM179A Missense_Mutation p.T903S 0.12 deleterious(0) probably_damaging(0.91) TCGA-KK-A6E5-01 3 99569210 99569210 C G FILIP1L Missense_Mutation p.S437T 0.09 deleterious(0.05) possibly_damaging(0.818) TCGA-KK-A6E5-01 3 99649664 99649664 G C FILIP1L Silent p.L67L 0.13 TCGA-KK-A6E5-01 4 76571629 76571629 C T G3BP2 Missense_Mutation p.V357I 0.03 tolerated(0.11) probably_damaging(0.997) TCGA-KK-A6E5-01 6 142490757 142490757 A T VTA1 Missense_Mutation p.Y93F 0.09 deleterious(0.04) probably_damaging(0.997) TCGA-KK-A6E5-01 6 26199817 26199817 C T HIST1H2BF Missense_Mutation p.P11S 0.09 tolerated_low_confidence(0.2) unknown(0) TCGA-KK-A6E5-01 6 34824168 34824168 C T UHRF1BP1 Missense_Mutation p.L425F 0.15 deleterious(0.01) benign(0) TCGA-KK-A6E5-01 6 49754653 49754653 A G PGK2 Missense_Mutation p.V83A 0.14 tolerated(0.83) benign(0.001) TCGA-KK-A6E5-01 6 73830210 73830210 T - KCNQ5 Frame_Shift_Del p.W378Gfs*20 0.24 TCGA-KK-A6E5-01 7 102856991 102856991 C A DPY19L2P2 Splice_Site 0.24 TCGA-KK-A6E5-01 8 142188277 142188281 GATAA - DENND3 Frame_Shift_Del p.K861Efs*2 0.13 TCGA-KK-A6E5-01 9 138657479 138657479 G A KCNT1 Missense_Mutation p.V404M 0.23 deleterious(0) possibly_damaging(0.887) TCGA-KK-A6E6-01 10 50901903 50901903 G A C10orf53 Missense_Mutation p.V61I 0.30 tolerated_low_confidence(0.64) benign(0.13) TCGA-KK-A6E6-01 11 57367489 57367489 C A SERPING1 Silent p.S63S 0.16 TCGA-KK-A6E6-01 11 93466745 93466745 C G KIAA1731 3'Flank 0.32 TCGA-KK-A6E6-01 12 11091630 11091630 A C TAS2R14 Silent p.V59V 0.16 TCGA-KK-A6E6-01 12 124289442 124289442 C T DNAH10 Missense_Mutation p.R830W 0.05 possibly_damaging(0.772) TCGA-KK-A6E6-01 12 49374247 49374247 C T WNT1 Silent p.A133A 0.22 TCGA-KK-A6E6-01 14 25042795 25042795 T C CTSG 3'UTR 0.32 TCGA-KK-A6E6-01 14 60591204 60591204 G T PCNXL4 Missense_Mutation p.C538F 0.12 deleterious(0.01) probably_damaging(0.938) TCGA-KK-A6E6-01 16 23417460 23417460 A G COG7 Silent p.N533N 0.19 TCGA-KK-A6E6-01 16 5110422 5110422 A G C16orf89 Missense_Mutation p.L125P 0.06 deleterious(0) probably_damaging(0.962) TCGA-KK-A6E6-01 16 51175110 51175110 C A SALL1 Missense_Mutation p.M341I 0.09 tolerated(0.27) benign(0) TCGA-KK-A6E6-01 16 7568246 7568246 C T RBFOX1 Missense_Mutation p.T62M 0.04 deleterious(0) probably_damaging(0.919) TCGA-KK-A6E6-01 16 87760499 87760499 A G KLHDC4 Missense_Mutation p.F211L 0.23 deleterious(0) probably_damaging(0.991) TCGA-KK-A6E6-01 17 27069047 27069047 C G NEK8 3'UTR 0.07 TCGA-KK-A6E6-01 17 37826226 37826226 C T PNMT Missense_Mutation p.R145C 0.10 tolerated(0.08) benign(0.012) TCGA-KK-A6E6-01 17 7222513 7222513 G A NEURL4 Silent p.F1180F 0.18 TCGA-KK-A6E6-01 18 21120489 21120489 C T NPC1 Missense_Mutation p.V843M 0.19 deleterious(0.04) benign(0.141) TCGA-KK-A6E6-01 18 9888099 9888099 T G TXNDC2 Silent p.L541L 0.35 TCGA-KK-A6E6-01 19 3976609 3976609 C A EEF2 Missense_Mutation p.K840N 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-KK-A6E6-01 19 39964093 39964093 G A SUPT5H Silent p.L808L 0.22 TCGA-KK-A6E6-01 1 10186877 10186877 T C UBE4B Missense_Mutation p.L527P 0.11 deleterious(0) probably_damaging(0.984) TCGA-KK-A6E6-01 1 158450409 158450409 A C OR10R2 Missense_Mutation p.I248L 0.12 deleterious(0.02) possibly_damaging(0.856) TCGA-KK-A6E6-01 1 173556842 173556842 A G SLC9C2 Missense_Mutation p.I162T 0.08 tolerated(1) benign(0.004) TCGA-KK-A6E6-01 1 198703477 198703477 G C PTPRC Missense_Mutation p.D734H 0.03 deleterious(0.01) probably_damaging(0.981) TCGA-KK-A6E6-01 1 205068139 205068144 ATCTTC - RBBP5 In_Frame_Del p.E357_D358del 0.17 TCGA-KK-A6E6-01 1 209804013 209804013 T G LAMB3 Missense_Mutation p.Y297S 0.11 deleterious(0) probably_damaging(0.956) TCGA-KK-A6E6-01 1 35921839 35921839 C G KIAA0319L Missense_Mutation p.L477F 0.33 deleterious(0) probably_damaging(1) TCGA-KK-A6E6-01 1 43779603 43779603 G T TIE1 Silent p.L791L 0.13 TCGA-KK-A6E6-01 1 55077406 55077406 C T FAM151A Silent p.T271T 0.12 TCGA-KK-A6E6-01 1 7848219 7848219 G C PER3 Missense_Mutation p.D169H 0.20 deleterious(0) probably_damaging(0.953) TCGA-KK-A6E6-01 1 7848237 7848237 G C PER3 Missense_Mutation p.D175H 0.13 deleterious(0) probably_damaging(0.953) TCGA-KK-A6E6-01 1 7848268 7848268 G C PER3 Missense_Mutation p.R185T 0.09 deleterious(0.04) possibly_damaging(0.587) TCGA-KK-A6E6-01 20 16360454 16360454 G A KIF16B Silent p.D731D 0.18 TCGA-KK-A6E6-01 20 58564004 58564004 G A CDH26 Missense_Mutation p.V357M 0.12 deleterious(0.03) possibly_damaging(0.813) TCGA-KK-A6E6-01 2 11053815 11053815 C T KCNF1 Silent p.T421T 0.20 TCGA-KK-A6E6-01 2 202496776 202496777 - T TMEM237 Frame_Shift_Ins p.S184Kfs*8 0.14 TCGA-KK-A6E6-01 2 239090711 239090711 G A ILKAP Silent p.N277N 0.06 TCGA-KK-A6E6-01 2 27277614 27277614 G A AGBL5 Missense_Mutation p.R223H 0.29 deleterious(0) probably_damaging(0.99) TCGA-KK-A6E6-01 2 90458660 90458660 C A CH17-132F21.1 Missense_Mutation p.D112E 0.04 TCGA-KK-A6E6-01 3 38793972 38793972 C T SCN10A Missense_Mutation p.R498Q 0.20 tolerated(0.07) benign(0.048) TCGA-KK-A6E6-01 4 10447770 10447770 T A ZNF518B Silent p.A61A 0.10 TCGA-KK-A6E6-01 4 26622238 26622238 T C TBC1D19 Silent p.F74F 0.21 TCGA-KK-A6E6-01 5 70307189 70307189 G A NAIP Missense_Mutation p.T194M 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-KK-A6E6-01 6 100838230 100838230 C A SIM1 3'UTR 0.27 TCGA-KK-A6E6-01 6 43519114 43519114 G A XPO5 Missense_Mutation p.S550F 0.30 deleterious(0) probably_damaging(0.99) TCGA-KK-A6E6-01 6 50791238 50791238 C T TFAP2B Missense_Mutation p.P67L 0.22 deleterious(0.02) probably_damaging(0.963) TCGA-KK-A6E6-01 6 80383442 80383442 G A SH3BGRL2 Missense_Mutation p.V53I 0.22 tolerated(0.69) benign(0.003) TCGA-KK-A6E6-01 7 129818271 129818271 T C TMEM209 Missense_Mutation p.N406S 0.19 tolerated(0.05) probably_damaging(0.993) TCGA-KK-A6E6-01 7 142997525 142997525 T A CASP2 Intron 0.08 TCGA-KK-A6E6-01 7 43546798 43546798 C T HECW1 Missense_Mutation p.R1232C 0.15 deleterious(0) probably_damaging(0.995) TCGA-KK-A6E6-01 8 144776071 144776071 C T ZNF707 Missense_Mutation p.R163C 0.16 tolerated(0.09) benign(0) TCGA-KK-A6E6-01 8 52321583 52321583 G A PXDNL Silent p.P867P 0.35 TCGA-KK-A6E6-01 9 112003903 112003903 A C EPB41L4B Intron 0.12 TCGA-KK-A6E6-01 X 108641817 108641817 G A GUCY2F Missense_Mutation p.R746W 0.17 deleterious(0.04) benign(0.142) TCGA-KK-A6E6-01 X 69843845 69843845 C T TEX11 Missense_Mutation p.R584H 0.43 tolerated(0.09) benign(0.019) TCGA-KK-A6E6-01 X 78010846 78010846 T C LPAR4 Silent p.A160A 0.25 TCGA-KK-A6E7-01 10 89717715 89717716 - A PTEN Frame_Shift_Ins p.P248Tfs*5 0.34 TCGA-KK-A6E7-01 10 93999747 93999747 C G CPEB3 Missense_Mutation p.D121H 0.36 deleterious(0) possibly_damaging(0.908) TCGA-KK-A6E7-01 11 113933973 113933973 G A ZBTB16 5'UTR 0.10 TCGA-KK-A6E7-01 11 64669827 64669827 C T ATG2A Missense_Mutation p.C1270Y 0.47 tolerated(0.5) possibly_damaging(0.714) TCGA-KK-A6E7-01 12 85450803 85450803 C T LRRIQ1 Silent p.A744A 0.30 TCGA-KK-A6E7-01 14 90738628 90738628 A G PSMC1 Silent p.T400T 0.10 TCGA-KK-A6E7-01 16 1129911 1129911 C T SSTR5 Missense_Mutation p.P348L 0.20 tolerated(0.5) benign(0) TCGA-KK-A6E7-01 16 58036476 58036476 C T USB1 Silent p.S64S 0.53 TCGA-KK-A6E7-01 17 26666643 26666643 C A TNFAIP1 Silent p.L32L 0.26 TCGA-KK-A6E7-01 17 49710999 49710999 G A CA10 Missense_Mutation p.R268C 0.12 deleterious(0) probably_damaging(0.999) TCGA-KK-A6E7-01 17 76563157 76563157 C T DNAH17 Missense_Mutation p.R459H 0.09 benign(0.002) TCGA-KK-A6E7-01 17 80013939 80013939 G A GPS1 Silent p.R339R 0.11 TCGA-KK-A6E7-01 17 80900326 80900327 - T TBCD Frame_Shift_Ins p.G1190Wfs*23 0.40 TCGA-KK-A6E7-01 18 44560758 44560758 C T TCEB3B Missense_Mutation p.R293H 0.34 tolerated(0.53) benign(0) TCGA-KK-A6E7-01 19 36018836 36018836 G A SBSN Silent p.G116G 0.06 TCGA-KK-A6E7-01 19 40828229 40828229 C A C19orf47 Missense_Mutation p.A277S 0.30 tolerated(0.28) benign(0.127) TCGA-KK-A6E7-01 19 54822890 54822890 T G LILRA5 Missense_Mutation p.D169A 0.37 deleterious(0.05) benign(0.08) TCGA-KK-A6E7-01 19 9057963 9057963 G A MUC16 Missense_Mutation p.S9828F 0.35 unknown(0) TCGA-KK-A6E7-01 19 9091118 9091118 G T MUC16 Missense_Mutation p.L233I 0.07 unknown(0) TCGA-KK-A6E7-01 1 111217282 111217282 C T KCNA3 Silent p.P50P 0.23 TCGA-KK-A6E7-01 1 151288289 151288289 C T PI4KB Missense_Mutation p.M235I 0.37 tolerated(0.33) benign(0.219) TCGA-KK-A6E7-01 1 201328346 201328346 A G TNNT2 Missense_Mutation p.W287R 0.24 deleterious(0.01) benign(0.037) TCGA-KK-A6E7-01 1 26883148 26883148 C T RPS6KA1 Missense_Mutation p.S316F 0.26 deleterious(0.01) possibly_damaging(0.622) TCGA-KK-A6E7-01 2 179554578 179554578 A G TTN Missense_Mutation p.V10603A 0.07 TCGA-KK-A6E7-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-KK-A6E7-01 2 241689870 241689870 G A KIF1A Missense_Mutation p.R985C 0.17 deleterious(0) probably_damaging(0.928) TCGA-KK-A6E7-01 3 183703263 183703263 G A ABCC5 Intron 0.39 TCGA-KK-A6E7-01 5 150923936 150923936 C G FAT2 Missense_Mutation p.G2251A 0.21 probably_damaging(1) TCGA-KK-A6E7-01 5 37038775 37038775 A G NIPBL Missense_Mutation p.I2015V 0.31 tolerated(0.2) probably_damaging(0.951) TCGA-KK-A6E7-01 6 2770371 2770371 C T WRNIP1 Silent p.H344H 0.30 TCGA-KK-A6E7-01 7 137790074 137790074 G C AKR1D1 Missense_Mutation p.A160P 0.35 deleterious(0) probably_damaging(0.967) TCGA-KK-A6E7-01 7 38725115 38725116 - G FAM183B 3'UTR 0.31 TCGA-KK-A6E7-01 7 99909507 99909507 C T SPDYE3 Silent p.L227L 0.33 TCGA-KK-A6E7-01 8 142505558 142505558 G T MROH5 Missense_Mutation p.D61E 0.34 tolerated(0.19) benign(0.192) TCGA-KK-A6E7-01 X 125299264 125299264 C T DCAF12L2 Missense_Mutation p.G215D 0.27 deleterious(0) probably_damaging(1) TCGA-KK-A6E7-01 X 128901598 128901598 C G XPNPEP2 Missense_Mutation p.T587S 0.76 deleterious(0.01) benign(0.13) TCGA-KK-A6E8-01 11 101347235 101347235 C A TRPC6 Missense_Mutation p.W514L 0.06 deleterious(0) probably_damaging(0.998) TCGA-KK-A6E8-01 11 40137425 40137425 G A LRRC4C Missense_Mutation p.P140S 0.21 deleterious(0) probably_damaging(0.997) TCGA-KK-A6E8-01 11 40137468 40137468 G A LRRC4C Silent p.N125N 0.17 TCGA-KK-A6E8-01 11 58170679 58170679 G T OR5B3 Missense_Mutation p.D68E 0.36 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-KK-A6E8-01 12 109526259 109526259 G A ALKBH2 Missense_Mutation p.P180S 0.38 deleterious(0.02) benign(0.198) TCGA-KK-A6E8-01 12 86373484 86373484 G A MGAT4C Silent p.N340N 0.09 TCGA-KK-A6E8-01 13 110833688 110833688 C T COL4A1 Missense_Mutation p.R715H 0.53 possibly_damaging(0.45) TCGA-KK-A6E8-01 14 38061209 38061235 CAAGTAGCAGCCGTTCTCGAACATGTT - FOXA1 In_Frame_Del p.N252_L260del 0.30 TCGA-KK-A6E8-01 14 95999973 95999973 C T GLRX5 5'Flank 0.54 TCGA-KK-A6E8-01 15 54860001 54860001 T C UNC13C Missense_Mutation p.Y1988H 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KK-A6E8-01 16 4559437 4559437 G A HMOX2 Missense_Mutation p.G241S 0.06 tolerated(0.07) benign(0.044) TCGA-KK-A6E8-01 17 79826902 79826904 CTC - ARHGDIA In_Frame_Del p.E155del 0.16 TCGA-KK-A6E8-01 18 21364040 21364040 C T LAMA3 Missense_Mutation p.R508W 0.10 probably_damaging(0.998) TCGA-KK-A6E8-01 19 2769012 2769012 G A SGTA Missense_Mutation p.L19F 0.41 deleterious(0.04) benign(0.132) TCGA-KK-A6E8-01 19 44097045 44097045 G A L34079.2 Missense_Mutation p.A49V 0.08 deleterious(0.05) benign(0.043) TCGA-KK-A6E8-01 19 46191769 46191769 C G SNRPD2 Missense_Mutation p.E20Q 0.37 deleterious(0.03) possibly_damaging(0.581) TCGA-KK-A6E8-01 19 49217169 49217169 G A MAMSTR Missense_Mutation p.S286L 0.12 tolerated(0.06) benign(0.307) TCGA-KK-A6E8-01 19 51172430 51172430 C A SHANK1 Silent p.P929P 0.39 TCGA-KK-A6E8-01 19 9058771 9058771 T C MUC16 Missense_Mutation p.M9559V 0.41 unknown(0) TCGA-KK-A6E8-01 1 118479418 118479418 G T WDR3 Silent p.V136V 0.46 TCGA-KK-A6E8-01 1 186056762 186056762 C T HMCN1 Silent p.H3116H 0.50 TCGA-KK-A6E8-01 1 20073664 20073664 G A TMCO4 Missense_Mutation p.T202M 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-KK-A6E8-01 1 202936394 202936394 G T CYB5R1 5'UTR 0.48 TCGA-KK-A6E8-01 1 208062820 208062820 G A CD34 Silent p.A248A 0.50 TCGA-KK-A6E8-01 1 222805661 222805661 G C MIA3 Silent p.L1108L 0.09 TCGA-KK-A6E8-01 1 63999809 63999809 A T EFCAB7 Missense_Mutation p.K242N 0.24 deleterious(0.01) benign(0.129) TCGA-KK-A6E8-01 1 89479884 89479885 AA - GBP3 Frame_Shift_Del p.F169Cfs*29 0.28 TCGA-KK-A6E8-01 1 90482961 90482961 G C ZNF326 Missense_Mutation p.E338Q 0.42 deleterious(0) possibly_damaging(0.478) TCGA-KK-A6E8-01 20 58467116 58467116 G A SYCP2 Nonsense_Mutation p.Q765* 0.45 TCGA-KK-A6E8-01 22 43203169 43203169 A G ARFGAP3 Missense_Mutation p.Y441H 0.50 deleterious(0.02) possibly_damaging(0.677) TCGA-KK-A6E8-01 22 45946380 45946380 G A FBLN1 Missense_Mutation p.E528K 0.20 deleterious(0) probably_damaging(0.973) TCGA-KK-A6E8-01 2 152698423 152698423 C T CACNB4 Silent p.G432G 0.35 TCGA-KK-A6E8-01 2 17699517 17699517 G A RAD51AP2 Missense_Mutation p.R56C 0.07 deleterious(0.04) benign(0.158) TCGA-KK-A6E8-01 2 190531324 190531324 C G ASNSD1 Missense_Mutation p.L156V 0.38 tolerated(0.05) possibly_damaging(0.777) TCGA-KK-A6E8-01 2 20647434 20647434 C T RHOB Missense_Mutation p.R70W 0.09 deleterious(0) probably_damaging(1) TCGA-KK-A6E8-01 2 220285375 220285375 G T DES Silent p.S298S 0.43 TCGA-KK-A6E8-01 2 71046973 71046973 C T CLEC4F Missense_Mutation p.V38I 0.40 tolerated(0.39) benign(0.004) TCGA-KK-A6E8-01 4 37640115 37640115 C A RELL1 Missense_Mutation p.V133F 0.36 deleterious(0.01) benign(0.426) TCGA-KK-A6E8-01 5 121356219 121356219 T A SRFBP1 Missense_Mutation p.D263E 0.36 deleterious(0) probably_damaging(0.999) TCGA-KK-A6E8-01 5 140530499 140530499 C T PCDHB6 Missense_Mutation p.R221W 0.08 deleterious(0) probably_damaging(0.98) TCGA-KK-A6E8-01 5 151208547 151208547 C G GLRA1 Missense_Mutation p.V332L 0.37 deleterious(0) probably_damaging(0.988) TCGA-KK-A6E8-01 6 129637064 129637064 A G LAMA2 Missense_Mutation p.Q1298R 0.42 tolerated(0.17) probably_damaging(0.999) TCGA-KK-A6E8-01 6 17507505 17507505 G A CAP2 Missense_Mutation p.V136I 0.06 tolerated(0.55) benign(0.322) TCGA-KK-A6E8-01 6 48036204 48036204 C T PTCHD4 Missense_Mutation p.R63H 0.39 tolerated(0.31) probably_damaging(0.984) TCGA-KK-A6E8-01 6 90660518 90660518 C A BACH2 Missense_Mutation p.S436I 0.07 tolerated(0.06) possibly_damaging(0.451) TCGA-KK-A6E8-01 8 134472099 134472099 G A ST3GAL1 Missense_Mutation p.R311C 0.03 probably_damaging(0.99) TCGA-KK-A6E8-01 8 42693430 42693430 G A THAP1 Missense_Mutation p.P106L 0.05 deleterious(0.05) benign(0) TCGA-KK-A6E8-01 9 97522701 97522701 T A C9orf3 Silent p.A212A 0.46 TCGA-KK-A6E8-01 X 107938642 107938642 C G COL4A5 Missense_Mutation p.A1656G 0.90 benign(0.428) TCGA-KK-A6E8-01 X 44942769 44942769 A T KDM6A Missense_Mutation p.N1117Y 0.90 deleterious(0) probably_damaging(0.933) TCGA-KK-A7AP-01 10 127431798 127431798 G T EDRF1 Missense_Mutation p.G848V 0.26 deleterious(0) probably_damaging(1) TCGA-KK-A7AP-01 11 104034574 104034574 C T PDGFD Missense_Mutation p.A28T 0.05 deleterious(0.02) benign(0.079) TCGA-KK-A7AP-01 11 18026082 18026082 T C SERGEF Missense_Mutation p.E118G 0.44 tolerated(0.35) benign(0.02) TCGA-KK-A7AP-01 11 33589732 33589732 C T KIAA1549L Missense_Mutation p.R1100W 0.46 deleterious(0) probably_damaging(1) TCGA-KK-A7AP-01 11 40136892 40136892 T A LRRC4C Missense_Mutation p.K317N 0.48 deleterious(0.01) benign(0.287) TCGA-KK-A7AP-01 12 109703025 109703025 T C ACACB Silent p.S2351S 0.11 TCGA-KK-A7AP-01 12 117904900 117904900 C A KSR2 3'UTR 0.30 TCGA-KK-A7AP-01 12 124383256 124383256 C G DNAH10 Missense_Mutation p.L3061V 0.67 benign(0.231) TCGA-KK-A7AP-01 12 2676868 2676868 G A CACNA1C Silent p.L601L 0.42 TCGA-KK-A7AP-01 12 46211601 46211601 C T ARID2 Silent p.H189H 0.41 TCGA-KK-A7AP-01 12 49427537 49427537 G T KMT2D Missense_Mutation p.Q3651K 0.11 possibly_damaging(0.824) TCGA-KK-A7AP-01 13 113143999 113143999 C T TUBGCP3 Missense_Mutation p.V821M 0.79 tolerated(0.14) benign(0.04) TCGA-KK-A7AP-01 14 105461072 105461072 A - C14orf79 Frame_Shift_Del p.L319Sfs*84 0.28 TCGA-KK-A7AP-01 15 29093747 29093747 G A GOLGA6L7P 5'Flank 0.33 TCGA-KK-A7AP-01 15 49716687 49716687 A T FGF7 Nonsense_Mutation p.R65* 0.06 TCGA-KK-A7AP-01 16 46772020 46772020 C - MYLK3 Frame_Shift_Del p.E202Rfs*97 0.29 TCGA-KK-A7AP-01 17 18052096 18052096 C T MYO15A Silent p.R2262R 0.48 TCGA-KK-A7AP-01 17 18220605 18220605 T G SMCR8 Missense_Mutation p.V501G 0.52 deleterious(0) benign(0.295) TCGA-KK-A7AP-01 17 26874688 26874688 C A UNC119 Intron 0.82 TCGA-KK-A7AP-01 18 30913136 30913136 A T CCDC178 Splice_Site p.X293_splice 0.21 TCGA-KK-A7AP-01 18 8143703 8143703 A C PTPRM Missense_Mutation p.K742N 0.47 tolerated(0.1) probably_damaging(0.948) TCGA-KK-A7AP-01 19 40095282 40095282 G - LGALS13 Frame_Shift_Del p.C19Sfs*2 0.23 TCGA-KK-A7AP-01 19 42599443 42599443 G T POU2F2 Missense_Mutation p.H376N 0.39 deleterious(0.03) possibly_damaging(0.675) TCGA-KK-A7AP-01 19 49376722 49376722 C T PPP1R15A Missense_Mutation p.R78C 0.36 tolerated(0.17) benign(0) TCGA-KK-A7AP-01 19 6850726 6850726 A C VAV1 Silent p.G725G 0.44 TCGA-KK-A7AP-01 1 158606500 158606500 C A SPTA1 Silent p.G1747G 0.15 TCGA-KK-A7AP-01 1 176927554 176927554 C G ASTN1 Missense_Mutation p.A555P 0.44 deleterious(0.03) benign(0.01) TCGA-KK-A7AP-01 1 43162406 43162406 C T YBX1 Missense_Mutation p.R150C 0.48 tolerated(0.31) benign(0.001) TCGA-KK-A7AP-01 1 9777159 9777159 C T PIK3CD Missense_Mutation p.A308V 0.08 tolerated(0.66) benign(0) TCGA-KK-A7AP-01 20 44674562 44674562 C T SLC12A5 Missense_Mutation p.L562F 0.06 deleterious(0.04) probably_damaging(0.965) TCGA-KK-A7AP-01 2 210561313 210561313 G C MAP2 Missense_Mutation p.E1410Q 0.32 tolerated(0.08) probably_damaging(0.999) TCGA-KK-A7AP-01 2 97757244 97757244 G A FAHD2B Missense_Mutation p.T67M 0.37 tolerated(0.11) benign(0.001) TCGA-KK-A7AP-01 4 126319977 126319977 A T FAT4 Silent p.P1738P 0.38 TCGA-KK-A7AP-01 4 155254133 155254133 C T DCHS2 Missense_Mutation p.R577H 0.38 deleterious(0.04) benign(0.411) TCGA-KK-A7AP-01 4 167656222 167656222 G A SPOCK3 Silent p.S387S 0.47 TCGA-KK-A7AP-01 4 85562063 85562063 G A CDS1 Missense_Mutation p.V318M 0.43 tolerated(0.11) benign(0.066) TCGA-KK-A7AP-01 5 176814873 176814873 C T SLC34A1 Missense_Mutation p.R215W 0.39 deleterious(0) probably_damaging(0.999) TCGA-KK-A7AP-01 6 142630689 142630689 G A GPR126 Missense_Mutation p.R4H 0.33 tolerated_low_confidence(0.97) benign(0.001) TCGA-KK-A7AP-01 7 100334606 100334606 G A ZAN Missense_Mutation p.R143H 0.18 benign(0.031) TCGA-KK-A7AP-01 7 100682272 100682272 G A MUC17 Silent p.T2525T 0.45 TCGA-KK-A7AP-01 7 72040606 72040606 G T TYW1B Missense_Mutation p.S254R 0.40 tolerated(0.23) benign(0.064) TCGA-KK-A7AP-01 8 144940884 144940884 G C EPPK1 Missense_Mutation p.Q2180E 0.26 benign(0.057) TCGA-KK-A7AP-01 9 139656738 139656738 C T LCN15 Missense_Mutation p.R141Q 0.57 deleterious(0) probably_damaging(0.942) TCGA-KK-A7AQ-01 10 129913572 129913572 T C MKI67 Missense_Mutation p.Y367C 0.36 tolerated(0.18) possibly_damaging(0.693) TCGA-KK-A7AQ-01 12 57957910 57957910 A T KIF5A Missense_Mutation p.Q104L 0.26 tolerated(0.06) benign(0.252) TCGA-KK-A7AQ-01 15 72338097 72338097 G C MYO9A Missense_Mutation p.Q270E 0.35 deleterious(0) possibly_damaging(0.607) TCGA-KK-A7AQ-01 15 73528785 73528785 A C NEO1 Silent p.A463A 0.35 TCGA-KK-A7AQ-01 17 29196386 29196386 G A ATAD5 Missense_Mutation p.C1145Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-KK-A7AQ-01 17 47696426 47696426 A C SPOP Missense_Mutation p.F133V 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-KK-A7AQ-01 17 79995534 79995534 G A DCXR Missense_Mutation p.R9W 0.29 deleterious(0.03) benign(0.155) TCGA-KK-A7AQ-01 17 900393 900393 C G TIMM22 Missense_Mutation p.A4G 0.42 tolerated_low_confidence(0.07) unknown(0) TCGA-KK-A7AQ-01 18 61654457 61654457 T G SERPINB8 Missense_Mutation p.I357S 0.47 deleterious(0) probably_damaging(0.998) TCGA-KK-A7AQ-01 18 908301 908301 G A ADCYAP1 Missense_Mutation p.R93H 0.10 deleterious(0.01) benign(0.391) TCGA-KK-A7AQ-01 19 52249535 52249535 C T FPR1 Missense_Mutation p.R238H 0.24 tolerated(0.1) possibly_damaging(0.597) TCGA-KK-A7AQ-01 1 158064789 158064789 G A KIRREL Missense_Mutation p.R718Q 0.24 tolerated(0.57) benign(0.268) TCGA-KK-A7AQ-01 1 218607454 218607454 A G TGFB2 Missense_Mutation p.T209A 0.04 tolerated(0.36) benign(0.005) TCGA-KK-A7AQ-01 1 94946040 94946040 C A ABCD3 Silent p.A235A 0.37 TCGA-KK-A7AQ-01 21 36043027 36043027 T C CLIC6 Missense_Mutation p.L447P 0.47 tolerated(1) benign(0.003) TCGA-KK-A7AQ-01 22 46685360 46685360 G A TTC38 Missense_Mutation p.A382T 0.08 deleterious(0) probably_damaging(0.997) TCGA-KK-A7AQ-01 2 179489271 179489271 A T TTN Missense_Mutation p.H14912Q 0.32 TCGA-KK-A7AQ-01 2 186678578 186678578 T A FSIP2 Missense_Mutation p.F6801I 0.44 benign(0.135) TCGA-KK-A7AQ-01 2 192863838 192863838 T C TMEFF2 Silent p.A211A 0.36 TCGA-KK-A7AQ-01 2 207175936 207175936 G A ZDBF2 Silent p.S2228S 0.28 TCGA-KK-A7AQ-01 2 9475308 9475308 G C ASAP2 Missense_Mutation p.E283D 0.10 deleterious(0.01) possibly_damaging(0.9) TCGA-KK-A7AQ-01 3 108211370 108211370 A G MYH15 Missense_Mutation p.L303P 0.62 deleterious(0) probably_damaging(0.968) TCGA-KK-A7AQ-01 3 35763243 35763243 C T ARPP21 Missense_Mutation p.T347M 0.35 deleterious(0) probably_damaging(0.981) TCGA-KK-A7AQ-01 3 52027888 52027888 G A RPL29 Silent p.C119C 0.07 TCGA-KK-A7AQ-01 3 64085137 64085137 A C PRICKLE2 Missense_Mutation p.S709A 0.30 tolerated(0.54) benign(0) TCGA-KK-A7AQ-01 4 134073250 134073250 G A PCDH10 Missense_Mutation p.R652Q 0.35 tolerated(0.39) benign(0.012) TCGA-KK-A7AQ-01 5 107356650 107356650 C T FBXL17 Missense_Mutation p.V600M 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-KK-A7AQ-01 6 117241512 117241512 T C RFX6 Missense_Mutation p.S408P 0.09 deleterious(0.04) benign(0.24) TCGA-KK-A7AQ-01 6 30708568 30708568 T C FLOT1 Missense_Mutation p.Y121C 0.08 deleterious(0.03) possibly_damaging(0.657) TCGA-KK-A7AQ-01 7 93090147 93090147 C T CALCR Missense_Mutation p.V246M 0.35 deleterious(0) probably_damaging(1) TCGA-KK-A7AQ-01 7 99661891 99661891 C T ZSCAN21 Missense_Mutation p.A358V 0.47 deleterious(0.01) probably_damaging(0.942) TCGA-KK-A7AQ-01 8 101960982 101960982 C A YWHAZ Missense_Mutation p.V46F 0.04 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-KK-A7AQ-01 9 107288538 107288538 T A OR13C4 Missense_Mutation p.Q318L 0.32 deleterious(0) benign(0.01) TCGA-KK-A7AQ-01 9 120474795 120474795 A C TLR4 Missense_Mutation p.K130T 0.25 tolerated(0.15) benign(0.196) TCGA-KK-A7AQ-01 9 135866331 135866331 G A GFI1B Missense_Mutation p.R296H 0.22 deleterious(0) probably_damaging(0.999) TCGA-KK-A7AQ-01 9 139726231 139726231 G A RABL6 Missense_Mutation p.V173M 0.38 deleterious(0) probably_damaging(0.991) TCGA-KK-A7AQ-01 9 139751182 139751182 C T MAMDC4 Missense_Mutation p.R581W 0.13 deleterious(0.04) probably_damaging(0.95) TCGA-KK-A7AQ-01 9 32633777 32633777 C T TAF1L Missense_Mutation p.G601S 0.04 tolerated(0.68) possibly_damaging(0.771) TCGA-KK-A7AU-01 12 21626537 21626537 T C RECQL Silent p.V465V 0.07 TCGA-KK-A7AU-01 13 29012395 29012395 C T FLT1 Missense_Mutation p.R159Q 0.36 tolerated(0.19) probably_damaging(1) TCGA-KK-A7AU-01 15 22848235 22848235 C A TUBGCP5 Intron 0.36 TCGA-KK-A7AU-01 15 40855084 40855084 A C C15orf57 Missense_Mutation p.V53G 0.09 tolerated(0.25) benign(0.168) TCGA-KK-A7AU-01 15 42681285 42681285 C T CAPN3 Silent p.C264C 0.26 TCGA-KK-A7AU-01 17 7576927 7576927 C A TP53 Splice_Site p.X307_splice 0.70 TCGA-KK-A7AU-01 18 13056131 13056131 C G CEP192 Nonsense_Mutation p.S1181* 0.36 TCGA-KK-A7AU-01 19 36211883 36211883 G A KMT2B Missense_Mutation p.R545Q 0.43 possibly_damaging(0.885) TCGA-KK-A7AU-01 1 149884966 149884966 T C SV2A Missense_Mutation p.K143E 0.34 tolerated(0.97) benign(0.007) TCGA-KK-A7AU-01 1 157771741 157771741 C A FCRL1 Missense_Mutation p.A284S 0.45 tolerated(0.09) benign(0.411) TCGA-KK-A7AU-01 1 182025561 182025561 C A ZNF648 Nonsense_Mutation p.E529* 0.09 TCGA-KK-A7AU-01 1 2939177 2939177 C T ACTRT2 Silent p.H309H 0.38 TCGA-KK-A7AU-01 20 33999833 33999833 T G UQCC1 5'UTR 0.40 TCGA-KK-A7AU-01 20 42331293 42331293 G A MYBL2 Missense_Mutation p.R372H 0.39 tolerated(0.06) possibly_damaging(0.893) TCGA-KK-A7AU-01 22 37266570 37266570 G A NCF4 Silent p.P152P 0.39 TCGA-KK-A7AU-01 2 136570301 136570301 G A LCT Silent p.L645L 0.06 TCGA-KK-A7AU-01 4 126372407 126372407 G C FAT4 Missense_Mutation p.Q3412H 0.48 benign(0.189) TCGA-KK-A7AU-01 4 57860925 57860925 C T POLR2B Missense_Mutation p.R157W 0.50 deleterious(0) probably_damaging(1) TCGA-KK-A7AU-01 5 140731932 140731932 C T PCDHGB1 Missense_Mutation p.A702V 0.04 tolerated(0.23) possibly_damaging(0.67) TCGA-KK-A7AU-01 5 89992872 89992872 C T GPR98 Silent p.S2688S 0.31 TCGA-KK-A7AU-01 7 107600202 107600202 C T LAMB1 Missense_Mutation p.V798M 0.10 deleterious(0) probably_damaging(0.995) TCGA-KK-A7AU-01 8 94934399 94934399 T C PDP1 Missense_Mutation p.Y63H 0.26 tolerated_low_confidence(0.71) benign(0) TCGA-KK-A7AU-01 8 95538772 95538772 T G KIAA1429 Missense_Mutation p.K567T 0.61 deleterious(0.05) possibly_damaging(0.81) TCGA-KK-A7AU-01 9 136513016 136513016 G A DBH Missense_Mutation p.R358Q 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-KK-A7AU-01 X 152815041 152815041 G A ATP2B3 Silent p.T475T 0.92 TCGA-KK-A7AV-01 11 87847227 87847227 C T RAB38 Missense_Mutation p.E189K 0.10 tolerated(0.31) benign(0.276) TCGA-KK-A7AV-01 12 25261076 25261076 A G LRMP 3'UTR 0.16 TCGA-KK-A7AV-01 14 107178937 107178937 G T IGHV2-70 Nonsense_Mutation p.Y80* 0.09 TCGA-KK-A7AV-01 15 66795208 66795208 C A RPL4 Intron 0.08 TCGA-KK-A7AV-01 15 73590704 73590704 C A NEO1 Missense_Mutation p.T1306N 0.07 tolerated(0.17) possibly_damaging(0.906) TCGA-KK-A7AV-01 19 41078060 41078060 T C SPTBN4 Silent p.A2485A 0.05 TCGA-KK-A7AV-01 19 9061807 9061807 C G MUC16 Missense_Mutation p.V8547L 0.19 unknown(0) TCGA-KK-A7AV-01 1 103400616 103400616 A T COL11A1 Silent p.A1164A 0.08 TCGA-KK-A7AV-01 1 144821954 144821954 C G NBPF9 Silent p.P298P 0.12 TCGA-KK-A7AV-01 1 22927492 22927492 G T EPHA8 Silent p.A880A 0.06 TCGA-KK-A7AV-01 1 235973754 235973754 A T LYST Missense_Mutation p.L122I 0.32 tolerated_low_confidence(0.33) probably_damaging(0.914) TCGA-KK-A7AV-01 1 36026232 36026232 G T NCDN Silent p.T160T 0.04 TCGA-KK-A7AV-01 21 38098585 38098585 A G SIM2 Missense_Mutation p.S237G 0.13 deleterious(0.01) possibly_damaging(0.566) TCGA-KK-A7AV-01 3 142681313 142681313 A C PAQR9 Missense_Mutation p.F289C 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-KK-A7AV-01 3 47891066 47891066 T A DHX30 Intron 0.08 TCGA-KK-A7AV-01 3 48463187 48463187 C A PLXNB1 Missense_Mutation p.G517C 0.09 deleterious(0.01) possibly_damaging(0.894) TCGA-KK-A7AV-01 3 81539549 81539549 C G GBE1 3'UTR 0.26 TCGA-KK-A7AV-01 4 22415404 22415404 G C GPR125 Missense_Mutation p.P615A 0.19 tolerated(0.23) benign(0.002) TCGA-KK-A7AV-01 5 140432292 140432292 G T PCDHB1 Nonsense_Mutation p.E413* 0.22 TCGA-KK-A7AV-01 6 158927714 158927720 GCGCCTC A TULP4 In_Frame_Del p.R1541_L1542del 0.10 TCGA-KK-A7AV-01 7 127343360 127343360 G T SND1 Missense_Mutation p.G275C 0.17 deleterious(0) probably_damaging(1) TCGA-KK-A7AV-01 8 139144959 139144959 C A FAM135B Silent p.V1366V 0.04 TCGA-KK-A7AV-01 8 143694682 143694682 G A ARC Silent p.D317D 0.11 TCGA-KK-A7AV-01 X 153216820 153216820 T C HCFC1 Missense_Mutation p.D1833G 0.04 deleterious(0.03) benign(0.125) TCGA-KK-A7AV-01 X 48054447 48054447 G A SSX5 Missense_Mutation p.A63V 0.27 deleterious(0.01) possibly_damaging(0.709) TCGA-KK-A7AW-01 10 27324252 27324252 G C ANKRD26 Missense_Mutation p.R1043G 0.33 deleterious(0.04) possibly_damaging(0.772) TCGA-KK-A7AW-01 10 50740946 50740946 G C ERCC6-PGBD3 Missense_Mutation p.P22R 0.06 tolerated_low_confidence(0.23) benign(0.024) TCGA-KK-A7AW-01 10 85936271 85936271 A G C10orf99 Missense_Mutation p.R36G 0.35 deleterious(0.02) benign(0.151) TCGA-KK-A7AW-01 11 105845210 105845210 G A GRIA4 Intron 0.15 TCGA-KK-A7AW-01 12 96350665 96350665 G A AMDHD1 Missense_Mutation p.R171H 0.19 tolerated(0.05) benign(0.052) TCGA-KK-A7AW-01 15 25232089 25232089 A G SNORD108 RNA 0.19 TCGA-KK-A7AW-01 16 22260137 22260137 G T EEF2K Splice_Site p.X136_splice 0.17 TCGA-KK-A7AW-01 16 70164411 70164411 G A PDPR Silent p.Q231Q 0.12 TCGA-KK-A7AW-01 16 84089609 84089609 C A MBTPS1 Splice_Site p.X988_splice 0.22 TCGA-KK-A7AW-01 17 48650041 48650041 C T CACNA1G Silent p.D291D 0.55 TCGA-KK-A7AW-01 19 43372028 43372028 G T PSG1 3'UTR 0.21 TCGA-KK-A7AW-01 19 45411082 45411082 G T APOE Nonsense_Mutation p.E37* 0.10 TCGA-KK-A7AW-01 19 52671337 52671337 T G ZNF836 5'UTR 0.19 TCGA-KK-A7AW-01 1 205569620 205569621 - A MFSD4 3'UTR 0.11 TCGA-KK-A7AW-01 1 216219901 216219901 G A USH2A Missense_Mutation p.S2066F 0.35 possibly_damaging(0.786) TCGA-KK-A7AW-01 1 55569614 55569614 T G USP24 Missense_Mutation p.I1654L 0.62 tolerated(0.38) benign(0) TCGA-KK-A7AW-01 22 17444669 17444669 C T GAB4 Silent p.P509P 0.10 TCGA-KK-A7AW-01 22 21800526 21800526 G A HIC2 Missense_Mutation p.A448T 0.15 deleterious(0) benign(0.305) TCGA-KK-A7AW-01 2 1271265 1271265 C T SNTG2 Silent p.N402N 0.17 TCGA-KK-A7AW-01 2 203420161 203420161 A T BMPR2 Silent p.R591R 0.15 TCGA-KK-A7AW-01 2 228118887 228118887 C G COL4A3 Silent p.P275P 0.07 TCGA-KK-A7AW-01 2 26151923 26151923 C T KIF3C Missense_Mutation p.R769Q 0.06 benign(0.002) TCGA-KK-A7AW-01 2 97166221 97166221 C T NEURL3 RNA 0.35 TCGA-KK-A7AW-01 3 164739052 164739052 G A SI Silent p.G1073G 0.33 TCGA-KK-A7AW-01 4 123192375 123192375 C T KIAA1109 Missense_Mutation p.H2566Y 0.30 benign(0.438) TCGA-KK-A7AW-01 4 5500777 5500777 C T STK32B Silent p.L404L 0.23 TCGA-KK-A7AW-01 5 140229963 140229963 C T PCDHA9 Missense_Mutation p.T628M 0.18 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-KK-A7AW-01 5 151784130 151784130 G T NMUR2 Missense_Mutation p.T182N 0.10 deleterious(0) probably_damaging(0.991) TCGA-KK-A7AW-01 6 152671420 152671420 G A SYNE1 Silent p.N3928N 0.13 TCGA-KK-A7AW-01 6 155500554 155500554 G A TIAM2 Missense_Mutation p.V891M 0.20 deleterious(0.01) possibly_damaging(0.662) TCGA-KK-A7AW-01 6 51524479 51524479 C T PKHD1 Missense_Mutation p.R3482H 0.24 tolerated(0.06) benign(0.04) TCGA-KK-A7AW-01 7 129841775 129841775 C A TMEM209 Missense_Mutation p.S163I 0.18 deleterious(0) possibly_damaging(0.893) TCGA-KK-A7AW-01 7 37780567 37780567 C T GPR141 Missense_Mutation p.A191V 0.05 tolerated(0.77) benign(0.005) TCGA-KK-A7AW-01 7 92901950 92901950 C T CCDC132 Nonsense_Mutation p.Q236* 0.10 TCGA-KK-A7AW-01 8 72970018 72970018 G A TRPA1 Missense_Mutation p.R343C 0.25 deleterious(0.04) probably_damaging(0.976) TCGA-KK-A7AW-01 9 1053824 1053824 G C DMRT2 Missense_Mutation p.G210R 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-KK-A7AW-01 9 135983422 135983422 C A RALGDS Missense_Mutation p.V384L 0.23 tolerated(0.32) unknown(0) TCGA-KK-A7AW-01 X 1407766 1407766 A C CSF2RA Missense_Mutation p.Y153S 0.08 tolerated(0.05) possibly_damaging(0.796) TCGA-KK-A7AW-01 X 73811348 73811348 A G RLIM Missense_Mutation p.L601S 0.89 deleterious(0) probably_damaging(1) TCGA-KK-A7AY-01 10 5139704 5139704 G A AKR1C3 Missense_Mutation p.V111I 0.41 tolerated(0.14) benign(0.07) TCGA-KK-A7AY-01 10 91474844 91474844 A G KIF20B Missense_Mutation p.Y282C 0.06 tolerated(1) benign(0) TCGA-KK-A7AY-01 10 93220201 93220201 A G HECTD2 Missense_Mutation p.I96V 0.60 tolerated_low_confidence(0.24) benign(0.002) TCGA-KK-A7AY-01 11 20005785 20005785 C T NAV2 Silent p.D943D 0.34 TCGA-KK-A7AY-01 11 89070612 89070612 T A NOX4 Intron 0.38 TCGA-KK-A7AY-01 12 10777358 10777358 G A STYK1 Missense_Mutation p.A273V 0.35 tolerated(0.17) probably_damaging(1) TCGA-KK-A7AY-01 12 53185077 53185077 C T KRT3 Missense_Mutation p.R483H 0.38 deleterious(0.02) benign(0.315) TCGA-KK-A7AY-01 12 72425419 72425419 G A TPH2 Missense_Mutation p.D473N 0.28 deleterious(0.02) possibly_damaging(0.627) TCGA-KK-A7AY-01 12 9913370 9913370 G C CD69 Missense_Mutation p.P16R 0.33 tolerated(0.12) benign(0.352) TCGA-KK-A7AY-01 13 36050006 36050006 G A MAB21L1 Silent p.D90D 0.34 TCGA-KK-A7AY-01 13 52951500 52951500 G A THSD1 3'UTR 0.27 TCGA-KK-A7AY-01 14 23000897 23000897 A G TRAJ12 Missense_Mutation p.S4G 0.39 unknown(0) TCGA-KK-A7AY-01 15 43109261 43109261 C A TTBK2 Missense_Mutation p.R191L 0.48 deleterious(0.01) probably_damaging(1) TCGA-KK-A7AY-01 16 55907858 55907858 G A CES5A Silent p.N84N 0.38 TCGA-KK-A7AY-01 17 1563231 1563231 C T PRPF8 Missense_Mutation p.R1617Q 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-KK-A7AY-01 17 49057179 49057179 G C SPAG9 Missense_Mutation p.R1113G 0.34 deleterious(0) probably_damaging(0.931) TCGA-KK-A7AY-01 18 45368212 45368215 AGCA - SMAD2 Frame_Shift_Del p.C463Qfs*16 0.24 TCGA-KK-A7AY-01 19 17688065 17688065 G C COLGALT1 Missense_Mutation p.K337N 0.28 deleterious(0.02) benign(0.265) TCGA-KK-A7AY-01 19 2278617 2278617 G A C19orf35 Missense_Mutation p.A193V 0.24 tolerated(1) benign(0) TCGA-KK-A7AY-01 19 22939396 22939396 A G ZNF99 3'Flank 0.28 TCGA-KK-A7AY-01 19 4792690 4792690 C A FEM1A Missense_Mutation p.S275Y 0.37 tolerated(0.05) benign(0.084) TCGA-KK-A7AY-01 19 52376325 52376325 G C ZNF577 Silent p.T306T 0.25 TCGA-KK-A7AY-01 19 55148290 55148290 A T LILRB1 Silent p.P640P 0.35 TCGA-KK-A7AY-01 1 145752523 145752523 G C PDZK1 Missense_Mutation p.E186Q 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-KK-A7AY-01 1 152648603 152648603 G T LCE2C Missense_Mutation p.A38S 0.41 deleterious_low_confidence(0.04) unknown(0) TCGA-KK-A7AY-01 1 198719693 198719693 A G PTPRC Missense_Mutation p.M1049V 0.39 deleterious(0.01) probably_damaging(1) TCGA-KK-A7AY-01 1 219347260 219347260 C T LYPLAL1 Nonsense_Mutation p.Q10* 0.37 TCGA-KK-A7AY-01 1 236143233 236143233 G A NID1 Missense_Mutation p.A1133V 0.48 tolerated(0.6) benign(0.002) TCGA-KK-A7AY-01 1 47583591 47583591 A - CYP4Z1 Frame_Shift_Del p.V504Ffs*36 0.20 TCGA-KK-A7AY-01 1 70728395 70728395 G A ANKRD13C 3'UTR 0.31 TCGA-KK-A7AY-01 20 20269374 20269374 C G C20orf26 Missense_Mutation p.A973G 0.38 deleterious(0.01) benign(0.311) TCGA-KK-A7AY-01 22 42042990 42042990 C T XRCC6 Silent p.L288L 0.36 TCGA-KK-A7AY-01 2 118577297 118577297 A C DDX18 Missense_Mutation p.E148A 0.51 tolerated(0.11) benign(0.003) TCGA-KK-A7AY-01 2 152420177 152420177 C G NEB Silent p.V6212V 0.07 TCGA-KK-A7AY-01 2 237405943 237405943 G A IQCA1 Nonsense_Mutation p.Q67* 0.28 TCGA-KK-A7AY-01 2 238786003 238786003 A G RAMP1 Missense_Mutation p.R64G 0.45 tolerated(0.71) benign(0) TCGA-KK-A7AY-01 2 56599551 56599551 C T CCDC85A Missense_Mutation p.R464W 0.17 tolerated_low_confidence(0.15) benign(0.378) TCGA-KK-A7AY-01 2 70520767 70520767 G C SNRPG Missense_Mutation p.H5Q 0.23 tolerated(0.25) benign(0.009) TCGA-KK-A7AY-01 3 107497259 107497259 G A BBX Missense_Mutation p.S699N 0.37 deleterious(0) benign(0.004) TCGA-KK-A7AY-01 3 126135240 126135240 C T CCDC37 Missense_Mutation p.R103W 0.07 deleterious(0.03) benign(0.051) TCGA-KK-A7AY-01 3 148793758 148793758 T C HLTF Missense_Mutation p.N102S 0.07 deleterious(0) probably_damaging(0.999) TCGA-KK-A7AY-01 3 46944116 46944116 C T PTH1R Nonsense_Mutation p.Q438* 0.07 TCGA-KK-A7AY-01 4 47788901 47788901 G A CORIN Missense_Mutation p.P84S 0.44 tolerated_low_confidence(0.1) benign(0.097) TCGA-KK-A7AY-01 5 139745496 139745496 C T SLC4A9 Silent p.G620G 0.35 TCGA-KK-A7AY-01 5 153190627 153190627 C T GRIA1 Missense_Mutation p.R865W 0.43 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-KK-A7AY-01 5 45303942 45303942 C T HCN1 Splice_Site p.X460_splice 0.37 TCGA-KK-A7AY-01 6 125550359 125550359 T - TPD52L1 Frame_Shift_Del p.N77Kfs*3 0.25 TCGA-KK-A7AY-01 6 31832450 31832450 C T SLC44A4 Missense_Mutation p.D664N 0.26 deleterious(0) probably_damaging(1) TCGA-KK-A7AY-01 7 2962846 2962846 G A CARD11 Nonsense_Mutation p.R688* 0.72 TCGA-KK-A7AY-01 7 96639271 96639271 G - DLX6 Frame_Shift_Del p.S265Ifs*28 0.38 TCGA-KK-A7AY-01 7 99123549 99123550 TT - ZKSCAN5 Frame_Shift_Del p.F296Cfs*5 0.17 TCGA-KK-A7AY-01 8 24261576 24261576 G A ADAMDEC1 Missense_Mutation p.G461R 0.38 tolerated(0.24) benign(0.007) TCGA-KK-A7AY-01 X 103498923 103498923 G A ESX1 Missense_Mutation p.R140C 0.07 deleterious(0) probably_damaging(0.965) TCGA-KK-A7AZ-01 10 118320020 118320020 C T PNLIP Nonsense_Mutation p.Q385* 0.43 TCGA-KK-A7AZ-01 11 46515257 46515257 G A AMBRA1 Missense_Mutation p.R718C 0.53 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-KK-A7AZ-01 11 46564154 46564155 - C AMBRA1 Frame_Shift_Ins p.P383Sfs*8 0.36 TCGA-KK-A7AZ-01 11 73834139 73834139 G C C2CD3 Missense_Mutation p.S420C 0.33 deleterious(0) probably_damaging(1) TCGA-KK-A7AZ-01 12 67700007 67700007 A T CAND1 Silent p.G853G 0.21 TCGA-KK-A7AZ-01 13 27664046 27664046 A C USP12 Missense_Mutation p.C236W 0.31 deleterious(0) probably_damaging(1) TCGA-KK-A7AZ-01 14 105344279 105344279 G A CEP170B Missense_Mutation p.D85N 0.53 deleterious(0) probably_damaging(0.997) TCGA-KK-A7AZ-01 15 77473215 77473215 A T PEAK1 Missense_Mutation p.S352T 0.51 tolerated(0.1) probably_damaging(0.993) TCGA-KK-A7AZ-01 16 29816582 29816582 A T KIF22 Splice_Site p.X651_splice 0.03 TCGA-KK-A7AZ-01 16 58559097 58559097 T A CNOT1 Missense_Mutation p.D2257V 0.39 deleterious(0) possibly_damaging(0.806) TCGA-KK-A7AZ-01 16 81971363 81971363 A G PLCG2 Missense_Mutation p.D1018G 0.30 tolerated(0.05) benign(0.034) TCGA-KK-A7AZ-01 17 57842439 57842439 T G VMP1 Silent p.T174T 0.08 TCGA-KK-A7AZ-01 17 60483903 60483903 G T EFCAB3 Missense_Mutation p.G236V 0.39 tolerated(0.38) possibly_damaging(0.687) TCGA-KK-A7AZ-01 19 3984159 3984159 C A EEF2 Nonsense_Mutation p.E65* 0.33 TCGA-KK-A7AZ-01 19 51920435 51920435 C T SIGLEC10 Missense_Mutation p.A108T 0.33 deleterious(0.01) possibly_damaging(0.867) TCGA-KK-A7AZ-01 19 8174609 8174609 G T FBN3 Missense_Mutation p.N1454K 0.42 tolerated(0.06) possibly_damaging(0.654) TCGA-KK-A7AZ-01 1 158627401 158627401 G A SPTA1 Nonsense_Mutation p.R891* 0.41 TCGA-KK-A7AZ-01 1 55130850 55130850 T G MROH7 Missense_Mutation p.D414E 0.24 tolerated_low_confidence(0.51) benign(0.005) TCGA-KK-A7AZ-01 1 57219509 57219509 T C C1orf168 Intron 0.38 TCGA-KK-A7AZ-01 20 61834477 61834477 C T YTHDF1 Missense_Mutation p.G272D 0.36 tolerated(0.12) benign(0.101) TCGA-KK-A7AZ-01 21 41143130 41143130 C T IGSF5 Missense_Mutation p.R236W 0.05 deleterious(0.01) benign(0.28) TCGA-KK-A7AZ-01 2 148683678 148683678 T G ACVR2A Missense_Mutation p.V432G 0.07 deleterious(0) probably_damaging(0.995) TCGA-KK-A7AZ-01 2 148683679 148683679 T A ACVR2A Silent p.V432V 0.06 TCGA-KK-A7AZ-01 2 188216844 188216844 G T CALCRL Missense_Mutation p.F375L 0.55 deleterious(0.03) benign(0.025) TCGA-KK-A7AZ-01 2 43452511 43452512 - CC ZFP36L2 Frame_Shift_Ins p.G145Afs*43 0.62 TCGA-KK-A7AZ-01 3 124802839 124802839 G A SLC12A8 Silent p.D680D 0.47 TCGA-KK-A7AZ-01 3 179051242 179051242 C A ZNF639 Missense_Mutation p.Q164K 0.05 tolerated(0.31) benign(0.006) TCGA-KK-A7AZ-01 4 169060678 169060678 T G ANXA10 Missense_Mutation p.C48G 0.50 tolerated(0.06) benign(0.243) TCGA-KK-A7AZ-01 4 57522053 57522053 G C HOPX Silent p.A56A 0.23 TCGA-KK-A7AZ-01 4 77084530 77084530 G C SCARB2 Missense_Mutation p.H416D 0.31 deleterious(0.01) benign(0.004) TCGA-KK-A7AZ-01 5 133536761 133536761 A - PPP2CA Frame_Shift_Del p.F164Sfs*11 0.34 TCGA-KK-A7AZ-01 5 482774 482774 G A SLC9A3 Silent p.R415R 0.36 TCGA-KK-A7AZ-01 5 66480267 66480267 G A CD180 Missense_Mutation p.T135M 0.40 deleterious(0.04) probably_damaging(0.947) TCGA-KK-A7AZ-01 5 92956791 92956791 T G FAM172A Missense_Mutation p.I385L 0.38 deleterious(0.04) benign(0.012) TCGA-KK-A7AZ-01 6 26189197 26189197 G A HIST1H4D Silent p.R36R 0.46 TCGA-KK-A7AZ-01 6 7578701 7578701 C T DSP Missense_Mutation p.A997V 0.09 possibly_damaging(0.529) TCGA-KK-A7AZ-01 8 133980108 133980108 G A TG Missense_Mutation p.C1919Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-KK-A7AZ-01 9 35697765 35697765 T C TLN1 3'UTR 0.33 TCGA-KK-A7AZ-01 9 73477945 73477945 C T TRPM3 Missense_Mutation p.R114H 0.40 deleterious(0.02) benign(0.009) TCGA-KK-A7AZ-01 X 128724236 128724236 G A OCRL Missense_Mutation p.E899K 0.08 deleterious(0.03) benign(0.033) TCGA-KK-A7AZ-01 X 150770053 150770053 G A PASD1 Missense_Mutation p.D10N 0.05 tolerated(0.81) benign(0.351) TCGA-KK-A7B0-01 10 131761766 131761766 C T EBF3 Silent p.A52A 0.11 TCGA-KK-A7B0-01 11 1083190 1083190 G T MUC2 Missense_Mutation p.G697V 0.19 probably_damaging(1) TCGA-KK-A7B0-01 11 123677008 123677008 G C OR6M1 Missense_Mutation p.A17G 0.23 tolerated(0.49) benign(0.001) TCGA-KK-A7B0-01 11 55927409 55927409 G T OR8K5 Missense_Mutation p.P129T 0.07 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-KK-A7B0-01 12 104046463 104046463 G A STAB2 Missense_Mutation p.E463K 0.25 tolerated(0.07) probably_damaging(0.983) TCGA-KK-A7B0-01 12 15067692 15067692 T G ERP27 Missense_Mutation p.K267Q 0.22 deleterious(0.04) possibly_damaging(0.466) TCGA-KK-A7B0-01 12 56705040 56705040 T C CNPY2 Silent p.Q121Q 0.16 TCGA-KK-A7B0-01 12 57606350 57606350 G A LRP1 3'UTR 0.21 TCGA-KK-A7B0-01 12 8203211 8203211 G A FOXJ2 Missense_Mutation p.R544H 0.12 deleterious(0.03) probably_damaging(0.988) TCGA-KK-A7B0-01 15 35087001 35087001 G A ACTC1 Silent p.D3D 0.21 TCGA-KK-A7B0-01 15 50545830 50545830 C A HDC Missense_Mutation p.A252S 0.14 tolerated(0.41) possibly_damaging(0.836) TCGA-KK-A7B0-01 16 57685484 57685484 C T GPR56 Missense_Mutation p.P146L 0.16 tolerated(0.09) benign(0.022) TCGA-KK-A7B0-01 16 69727847 69727847 T C NFAT5 Silent p.S1373S 0.11 TCGA-KK-A7B0-01 17 39183291 39183291 G C KRTAP1-5 Missense_Mutation p.S39R 0.17 deleterious(0.01) unknown(0) TCGA-KK-A7B0-01 17 47696643 47696643 A G SPOP Missense_Mutation p.F102S 0.13 deleterious(0) probably_damaging(1) TCGA-KK-A7B0-01 17 78022497 78022497 C A CCDC40 Silent p.S264S 0.18 TCGA-KK-A7B0-01 19 42383300 42383300 G A CD79A Missense_Mutation p.R107Q 0.15 tolerated(0.72) benign(0.012) TCGA-KK-A7B0-01 19 7684907 7684907 T G XAB2 Missense_Mutation p.Q774P 0.10 tolerated(0.07) benign(0.065) TCGA-KK-A7B0-01 1 117619327 117619327 C T TTF2 Silent p.G485G 0.16 TCGA-KK-A7B0-01 1 118486064 118486064 C T WDR3 Silent p.V381V 0.13 TCGA-KK-A7B0-01 1 157805811 157805811 C A CD5L Nonsense_Mutation p.E64* 0.12 TCGA-KK-A7B0-01 1 86340995 86340995 C T COL24A1 Missense_Mutation p.G1017R 0.07 deleterious(0) probably_damaging(1) TCGA-KK-A7B0-01 2 141665495 141665495 G A LRP1B Silent p.C1157C 0.10 TCGA-KK-A7B0-01 2 185802525 185802525 C A ZNF804A Missense_Mutation p.T801N 0.13 tolerated(0.23) benign(0.029) TCGA-KK-A7B0-01 2 216262472 216262472 C A FN1 Missense_Mutation p.V1150F 0.11 deleterious(0.01) possibly_damaging(0.555) TCGA-KK-A7B0-01 2 31165137 31165137 G A GALNT14 Silent p.I292I 0.05 TCGA-KK-A7B0-01 2 45780823 45780823 A G SRBD1 Missense_Mutation p.Y486H 0.08 tolerated(0.81) benign(0) TCGA-KK-A7B0-01 2 89103878 89103878 T A ANKRD36BP2 RNA 0.21 TCGA-KK-A7B0-01 3 164748597 164748597 T C SI Missense_Mutation p.N932S 0.22 tolerated(0.53) benign(0.009) TCGA-KK-A7B0-01 3 30880548 30880563 CAAAAGCTCCCAACAC - GADL1 Frame_Shift_Del p.V277Tfs*6 0.08 TCGA-KK-A7B0-01 4 83378116 83378116 G T ENOPH1 Nonsense_Mutation p.E191* 0.10 TCGA-KK-A7B0-01 5 101593758 101593758 C A SLCO4C1 Missense_Mutation p.V388F 0.23 deleterious(0) possibly_damaging(0.835) TCGA-KK-A7B0-01 5 140517015 140517015 C T PCDHB5 Nonsense_Mutation p.Q667* 0.18 TCGA-KK-A7B0-01 5 140773889 140773889 G A PCDHGA8 Silent p.S503S 0.07 TCGA-KK-A7B0-01 5 98215342 98215342 G A CHD1 Nonsense_Mutation p.Q1051* 0.29 TCGA-KK-A7B0-01 6 42620325 42620325 T G UBR2 Missense_Mutation p.I904S 0.22 deleterious(0) benign(0.097) TCGA-KK-A7B0-01 7 10979720 10979720 A G NDUFA4 5'UTR 0.10 TCGA-KK-A7B0-01 7 110764938 110764938 C G LRRN3 Missense_Mutation p.P704A 0.16 tolerated_low_confidence(0.09) benign(0.028) TCGA-KK-A7B0-01 7 110764942 110764942 C A LRRN3 Missense_Mutation p.T705K 0.19 tolerated_low_confidence(0.45) benign(0.087) TCGA-KK-A7B0-01 9 91727511 91727511 T C SHC3 Missense_Mutation p.M169V 0.12 deleterious(0) possibly_damaging(0.504) TCGA-KK-A7B1-01 10 73544680 73544680 C T CDH23 Silent p.N1850N 0.29 TCGA-KK-A7B1-01 13 25848214 25848214 T C MTMR6 Missense_Mutation p.T46A 0.26 tolerated(0.09) benign(0.008) TCGA-KK-A7B1-01 14 31097463 31097463 G A SCFD1 Missense_Mutation p.S37N 0.17 tolerated(0.43) benign(0.001) TCGA-KK-A7B1-01 15 41769659 41769659 C T RTF1 Silent p.Y562Y 0.24 TCGA-KK-A7B1-01 15 48527104 48527104 G A SLC12A1 Missense_Mutation p.R373H 0.09 deleterious(0.01) benign(0.002) TCGA-KK-A7B1-01 17 33592770 33592770 C T SLFN5 Nonsense_Mutation p.R847* 0.10 TCGA-KK-A7B1-01 17 39021060 39021060 C A KRT12 Missense_Mutation p.D269Y 0.14 deleterious(0) probably_damaging(0.949) TCGA-KK-A7B1-01 17 39915087 39915087 G A JUP Silent p.C511C 0.20 TCGA-KK-A7B1-01 17 56620062 56620062 G A C17orf47 Missense_Mutation p.P496S 0.05 tolerated(0.05) benign(0) TCGA-KK-A7B1-01 17 58143748 58143748 C T HEATR6 Splice_Site p.X413_splice 0.18 TCGA-KK-A7B1-01 17 61995130 61995130 G A GH1 Missense_Mutation p.T149M 0.06 deleterious(0.04) probably_damaging(0.987) TCGA-KK-A7B1-01 1 20220960 20220960 C T OTUD3 Missense_Mutation p.A157V 0.06 tolerated(0.07) probably_damaging(0.93) TCGA-KK-A7B1-01 1 39750842 39750842 A T MACF1 Missense_Mutation p.M412L 0.24 benign(0.294) TCGA-KK-A7B1-01 1 78187835 78187835 G T USP33 Missense_Mutation p.P510H 0.06 deleterious(0.01) probably_damaging(1) TCGA-KK-A7B1-01 2 152222683 152222683 C T TNFAIP6 Missense_Mutation p.R116C 0.21 deleterious(0) probably_damaging(1) TCGA-KK-A7B1-01 2 29498076 29498076 T C ALK Missense_Mutation p.I644V 0.16 tolerated(0.59) benign(0) TCGA-KK-A7B1-01 4 170988533 170988533 T C AADAT Missense_Mutation p.I303V 0.27 tolerated(1) benign(0.007) TCGA-KK-A7B1-01 4 62800613 62800613 G A LPHN3 Missense_Mutation p.R655K 0.12 tolerated(0.86) benign(0.03) TCGA-KK-A7B1-01 5 145641086 145641086 G T RBM27 Missense_Mutation p.G636V 0.05 deleterious(0) probably_damaging(0.97) TCGA-KK-A7B1-01 6 35437258 35437258 G T RPL10A Nonsense_Mutation p.E88* 0.28 TCGA-KK-A7B1-01 7 11075358 11075358 C T PHF14 Missense_Mutation p.S516F 0.22 tolerated(0.07) probably_damaging(0.996) TCGA-KK-A7B1-01 X 77912605 77912605 C T ZCCHC5 Missense_Mutation p.R438H 0.26 tolerated(0.34) benign(0.001) TCGA-KK-A7B2-01 11 36680674 36680674 G C C11orf74 Missense_Mutation p.E202Q 0.05 deleterious(0.05) possibly_damaging(0.604) TCGA-KK-A7B2-01 11 45827881 45827881 A G SLC35C1 Missense_Mutation p.I177V 0.13 tolerated(0.05) benign(0.028) TCGA-KK-A7B2-01 11 56058345 56058345 T G OR8H1 Missense_Mutation p.H65P 0.06 deleterious(0) probably_damaging(0.912) TCGA-KK-A7B2-01 11 66321555 66321555 T A CTD-3074O7.2 3'Flank 0.09 TCGA-KK-A7B2-01 12 120897761 120897761 G C GATC Nonstop_Mutation p.*137Sext*16 0.08 TCGA-KK-A7B2-01 15 100537662 100537662 G A ADAMTS17 Silent p.P908P 0.10 TCGA-KK-A7B2-01 16 10532037 10532037 G A ATF7IP2 Missense_Mutation p.R347H 0.09 deleterious(0.02) probably_damaging(0.945) TCGA-KK-A7B2-01 16 28997053 28997053 C G LAT Silent p.S76S 0.05 TCGA-KK-A7B2-01 16 29913067 29913067 C T ASPHD1 Missense_Mutation p.R259W 0.17 deleterious(0.02) possibly_damaging(0.773) TCGA-KK-A7B2-01 16 4933905 4933905 G A PPL Missense_Mutation p.S1584L 0.09 deleterious(0.04) benign(0.386) TCGA-KK-A7B2-01 17 76394348 76394348 A G PGS1 Missense_Mutation p.S143G 0.06 tolerated(0.18) benign(0.014) TCGA-KK-A7B2-01 19 45974106 45974106 G A FOSB Missense_Mutation p.G116R 0.08 tolerated(0.11) probably_damaging(0.956) TCGA-KK-A7B2-01 1 11254545 11254545 G A ANGPTL7 Missense_Mutation p.E234K 0.04 tolerated(0.27) possibly_damaging(0.771) TCGA-KK-A7B2-01 1 247614554 247614554 G A OR2B11 Missense_Mutation p.T244M 0.08 deleterious(0) probably_damaging(0.999) TCGA-KK-A7B2-01 2 98736173 98736173 A G VWA3B Silent p.L163L 0.06 TCGA-KK-A7B2-01 3 164724640 164724640 T C SI Missense_Mutation p.N1457S 0.05 tolerated(1) benign(0.199) TCGA-KK-A7B2-01 5 140222517 140222517 G A PCDHA8 Silent p.A537A 0.09 TCGA-KK-A7B2-01 5 149502718 149502718 C T PDGFRB Silent p.V690V 0.06 TCGA-KK-A7B2-01 5 80638492 80638492 T C ACOT12 Missense_Mutation p.K376R 0.08 tolerated(0.11) benign(0.055) TCGA-KK-A7B2-01 6 74115421 74115421 A T DDX43 Missense_Mutation p.T224S 0.08 tolerated(0.44) benign(0.009) TCGA-KK-A7B2-01 9 5968436 5968436 T A KIAA2026 Missense_Mutation p.T599S 0.05 tolerated(0.2) benign(0.011) TCGA-KK-A7B2-01 X 70465642 70465642 A - ZMYM3 Frame_Shift_Del p.I912Mfs*2 0.18 TCGA-KK-A7B3-01 10 103789374 103789374 C G C10orf76 Intron 0.31 TCGA-KK-A7B3-01 10 12149963 12149963 C T DHTKD1 Silent p.Y701Y 0.24 TCGA-KK-A7B3-01 10 54074801 54074801 G A DKK1 Missense_Mutation p.C121Y 0.13 deleterious(0) probably_damaging(1) TCGA-KK-A7B3-01 10 75006960 75006960 T G DNAJC9 5'UTR 0.38 TCGA-KK-A7B3-01 11 55927529 55927529 G A OR8K5 Nonsense_Mutation p.R89* 0.26 TCGA-KK-A7B3-01 11 62767263 62767263 G A SLC22A8 Silent p.S163S 0.17 TCGA-KK-A7B3-01 12 11035261 11035261 C T PRH1 Missense_Mutation p.R46H 0.34 tolerated_low_confidence(0.17) benign(0.365) TCGA-KK-A7B3-01 13 115089515 115089515 A T CHAMP1 Missense_Mutation p.K66N 0.34 deleterious(0) possibly_damaging(0.678) TCGA-KK-A7B3-01 13 33635172 33635172 C A KL Silent p.A652A 0.15 TCGA-KK-A7B3-01 14 44976212 44976212 C A FSCB 5'UTR 0.31 TCGA-KK-A7B3-01 14 64676752 64676752 G A SYNE2 Silent p.T6211T 0.14 TCGA-KK-A7B3-01 15 43738617 43738617 G A TP53BP1 Missense_Mutation p.A1003V 0.50 tolerated(0.17) benign(0.207) TCGA-KK-A7B3-01 16 21995951 21995951 A T PDZD9 Missense_Mutation p.D84E 0.18 tolerated(0.33) benign(0.02) TCGA-KK-A7B3-01 16 71149609 71149609 G A HYDIN Silent p.C439C 0.27 TCGA-KK-A7B3-01 16 90027430 90027430 G C DEF8 Silent p.L263L 0.29 TCGA-KK-A7B3-01 17 32961959 32961959 C G TMEM132E Missense_Mutation p.D520E 0.22 deleterious(0.01) benign(0.009) TCGA-KK-A7B3-01 17 56348167 56348167 C A MPO Missense_Mutation p.Q696H 0.25 deleterious(0.01) benign(0.001) TCGA-KK-A7B3-01 17 56582844 56582844 C T MTMR4 Silent p.P364P 0.38 TCGA-KK-A7B3-01 18 47806261 47806262 AT - MBD1 Frame_Shift_Del p.Y34Lfs*14 0.32 TCGA-KK-A7B3-01 19 4852306 4852306 G A PLIN3 Missense_Mutation p.A119V 0.06 deleterious(0.01) benign(0.047) TCGA-KK-A7B3-01 1 156849931 156849936 CCAGCT - NTRK1 In_Frame_Del p.Q730_L731del 0.17 TCGA-KK-A7B3-01 1 180904874 180904874 C G KIAA1614 Missense_Mutation p.S610C 0.33 deleterious(0.03) benign(0.14) TCGA-KK-A7B3-01 1 180905490 180905490 A C KIAA1614 Missense_Mutation p.K815N 0.33 deleterious(0) probably_damaging(0.941) TCGA-KK-A7B3-01 1 185962357 185962357 C T HMCN1 Missense_Mutation p.R1141C 0.40 probably_damaging(0.998) TCGA-KK-A7B3-01 1 223980187 223980187 G A TP53BP2 Missense_Mutation p.T967M 0.29 deleterious(0) probably_damaging(1) TCGA-KK-A7B3-01 21 40596364 40596364 G A BRWD1 Missense_Mutation p.P1118S 0.38 deleterious(0) probably_damaging(0.996) TCGA-KK-A7B3-01 2 108869816 108869816 T C SULT1C3 Missense_Mutation p.L106P 0.19 tolerated(0.14) possibly_damaging(0.544) TCGA-KK-A7B3-01 2 129075918 129075918 C T HS6ST1 Missense_Mutation p.E74K 0.18 deleterious(0.03) benign(0.026) TCGA-KK-A7B3-01 2 209030381 209030381 A G C2orf80 3'UTR 0.80 TCGA-KK-A7B3-01 2 209190015 209190015 T G PIKFYVE Missense_Mutation p.F827C 0.27 deleterious(0) probably_damaging(1) TCGA-KK-A7B3-01 2 228388506 228388506 C T AGFG1 Silent p.V135V 0.07 TCGA-KK-A7B3-01 2 31215825 31215825 G A GALNT14 Intron 0.38 TCGA-KK-A7B3-01 3 49069649 49069649 G C QRICH1 Missense_Mutation p.P702R 0.11 deleterious(0) probably_damaging(0.993) TCGA-KK-A7B3-01 3 49897143 49897143 G A CAMKV Missense_Mutation p.R372C 0.32 tolerated(0.08) benign(0) TCGA-KK-A7B3-01 5 168176626 168176626 T C SLIT3 Missense_Mutation p.N663S 0.32 deleterious(0) probably_damaging(0.998) TCGA-KK-A7B3-01 5 35968133 35968133 G T UGT3A1 Missense_Mutation p.A100E 0.28 tolerated(0.27) possibly_damaging(0.694) TCGA-KK-A7B3-01 7 44058720 44058720 C A POLR2J4 RNA 0.38 TCGA-KK-A7B3-01 7 44184841 44184841 G A GCK Missense_Mutation p.T432M 0.17 deleterious(0) probably_damaging(0.977) TCGA-KK-A7B3-01 9 113431241 113431241 C A MUSK Missense_Mutation p.S19R 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.863) TCGA-KK-A7B3-01 9 130213646 130213646 A G RPL12 5'UTR 0.26 TCGA-KK-A7B3-01 9 18474243 18474243 C G ADAMTSL1 Missense_Mutation p.R5G 0.44 tolerated_low_confidence(0.38) benign(0.084) TCGA-KK-A7B3-01 X 131516262 131516262 C A MBNL3 Missense_Mutation p.A333S 0.59 tolerated(0.09) benign(0.442) TCGA-KK-A7B4-01 10 18250534 18250534 C A SLC39A12 Missense_Mutation p.L96I 0.36 tolerated(0.17) benign(0.202) TCGA-KK-A7B4-01 10 43622119 43622119 G T RET Missense_Mutation p.A1046S 0.39 deleterious_low_confidence(0.01) benign(0.021) TCGA-KK-A7B4-01 11 14276232 14276232 T C SPON1 RNA 0.07 TCGA-KK-A7B4-01 11 18231939 18231939 G A RP11-113D6.10 3'UTR 0.29 TCGA-KK-A7B4-01 11 63065162 63065162 G A SLC22A10 Missense_Mutation p.A265T 0.34 deleterious(0) benign(0.012) TCGA-KK-A7B4-01 12 14798210 14798210 A C GUCY2C Missense_Mutation p.F584V 0.27 deleterious(0.01) possibly_damaging(0.576) TCGA-KK-A7B4-01 12 27234319 27234319 C T C12orf71 Missense_Mutation p.D200N 0.13 tolerated(0.06) possibly_damaging(0.857) TCGA-KK-A7B4-01 12 56638934 56638934 C T ANKRD52 Silent p.P815P 0.04 TCGA-KK-A7B4-01 12 56667436 56667436 A C CS Missense_Mutation p.L389V 0.05 tolerated(0.22) benign(0.024) TCGA-KK-A7B4-01 14 102442099 102442099 A G DYNC1H1 Missense_Mutation p.I103V 0.40 benign(0.002) TCGA-KK-A7B4-01 15 32449809 32449809 G A CHRNA7 Missense_Mutation p.G173D 0.31 deleterious(0) probably_damaging(0.999) TCGA-KK-A7B4-01 16 1271955 1271955 G A TPSG1 Missense_Mutation p.R267C 0.32 deleterious(0.04) possibly_damaging(0.869) TCGA-KK-A7B4-01 16 20563466 20563466 C T ACSM2B Silent p.K298K 0.08 TCGA-KK-A7B4-01 17 12655803 12655803 C T MYOCD Missense_Mutation p.R400W 0.13 deleterious(0) probably_damaging(1) TCGA-KK-A7B4-01 17 43482399 43482399 G T ARHGAP27 Missense_Mutation p.S39Y 0.09 deleterious(0) probably_damaging(0.984) TCGA-KK-A7B4-01 17 71193480 71193480 G T COG1 Silent p.L286L 0.18 TCGA-KK-A7B4-01 17 7579315 7579316 - C TP53 Frame_Shift_Ins p.C124Wfs*25 0.44 TCGA-KK-A7B4-01 18 33289771 33289771 G T GALNT1 3'UTR 0.39 TCGA-KK-A7B4-01 19 38229219 38229219 A C ZNF573 3'UTR 0.35 TCGA-KK-A7B4-01 1 109170825 109170825 T G FAM102B Missense_Mutation p.L198R 0.41 tolerated(0.13) possibly_damaging(0.879) TCGA-KK-A7B4-01 1 12726259 12726259 G A AADACL4 Missense_Mutation p.R246Q 0.36 tolerated(0.42) benign(0.025) TCGA-KK-A7B4-01 1 153947268 153947268 C T JTB Missense_Mutation p.E110K 0.29 deleterious(0.01) probably_damaging(0.991) TCGA-KK-A7B4-01 1 181058365 181058365 C G IER5 Missense_Mutation p.D109E 0.22 tolerated(0.88) benign(0.002) TCGA-KK-A7B4-01 1 183933081 183933081 C T COLGALT2 Silent p.L302L 0.06 TCGA-KK-A7B4-01 1 18809852 18809852 G A KLHDC7A 3'UTR 0.07 TCGA-KK-A7B4-01 1 200880923 200880923 G A C1orf106 Silent p.A434A 0.17 TCGA-KK-A7B4-01 1 228459795 228459795 G A OBSCN Silent p.S1953S 0.22 TCGA-KK-A7B4-01 1 231359886 231359886 T G C1orf131 3'UTR 0.55 TCGA-KK-A7B4-01 1 36055549 36055549 G A TFAP2E Silent p.G268G 0.11 TCGA-KK-A7B4-01 1 90058579 90058579 C A LRRC8B Missense_Mutation p.Q797K 0.36 tolerated(1) benign(0.007) TCGA-KK-A7B4-01 2 203379699 203379699 G T BMPR2 Missense_Mutation p.L206F 0.07 deleterious(0.02) probably_damaging(0.953) TCGA-KK-A7B4-01 2 203379700 203379700 G T BMPR2 Nonsense_Mutation p.E207* 0.07 TCGA-KK-A7B4-01 2 220038176 220038176 G A CNPPD1 Nonsense_Mutation p.Q196* 0.32 TCGA-KK-A7B4-01 4 173873358 173873358 C T GALNTL6 Silent p.D440D 0.56 TCGA-KK-A7B4-01 6 17648120 17648120 G A NUP153 Missense_Mutation p.P517L 0.05 tolerated(0.11) benign(0.009) TCGA-KK-A7B4-01 7 48046774 48046774 C T SUN3 Silent p.P160P 0.41 TCGA-KK-A7B4-01 7 97788717 97788721 GTGTT C LMTK2 Frame_Shift_Del p.V213Lfs*9 0.24 TCGA-KK-A7B4-01 8 124693363 124693363 G C ANXA13 3'UTR 0.42 TCGA-KK-A7B4-01 8 139190874 139190874 C T FAM135B Silent p.T311T 0.26 TCGA-KK-A7B4-01 8 17089971 17089971 A G CNOT7 Silent p.L232L 0.46 TCGA-KK-A7B4-01 8 27151801 27151801 C A TRIM35 Silent p.R186R 0.12 TCGA-KK-A7B4-01 8 56436082 56436082 G A XKR4 Missense_Mutation p.V417I 0.32 tolerated(1) probably_damaging(0.989) TCGA-KK-A7B4-01 9 107298274 107298274 T A OR13C3 Missense_Mutation p.H274L 0.32 deleterious(0) probably_damaging(1) TCGA-KK-A7B4-01 9 40772885 40772885 G A ZNF658 Missense_Mutation p.P797L 0.43 deleterious(0.02) probably_damaging(0.998) TCGA-KK-A7B4-01 9 85862749 85862749 C T FRMD3 3'UTR 0.39 TCGA-KK-A7B4-01 X 113965814 113965814 A C HTR2C Silent p.P49P 0.09 TCGA-KK-A8I4-01 11 114450926 114450926 C T NXPE4 Missense_Mutation p.G343R 0.18 tolerated(0.44) possibly_damaging(0.856) TCGA-KK-A8I4-01 11 129775615 129775615 G A PRDM10 Missense_Mutation p.T1066M 0.22 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-KK-A8I4-01 11 65413798 65413798 T C SIPA1 Missense_Mutation p.V457A 0.15 deleterious(0) benign(0.43) TCGA-KK-A8I4-01 11 76823690 76823690 C T CAPN5 Missense_Mutation p.A118V 0.13 deleterious(0.05) benign(0.03) TCGA-KK-A8I4-01 12 104056648 104056648 G A STAB2 Missense_Mutation p.A632T 0.12 tolerated(0.22) benign(0.094) TCGA-KK-A8I4-01 12 62996666 62996666 G A C12orf61 3'UTR 0.15 TCGA-KK-A8I4-01 12 63544328 63544328 C A AVPR1A Missense_Mutation p.D97Y 0.28 deleterious(0) probably_damaging(1) TCGA-KK-A8I4-01 12 86198925 86198925 T C RASSF9 Missense_Mutation p.E288G 0.17 deleterious(0) benign(0.301) TCGA-KK-A8I4-01 13 110960470 110960470 G C COL4A2 Silent p.A33A 0.24 TCGA-KK-A8I4-01 14 106330052 106330052 G A IGHJ5 Silent p.G7G 0.27 TCGA-KK-A8I4-01 14 54416914 54416914 C T BMP4 Missense_Mutation p.A355T 0.41 deleterious(0) probably_damaging(1) TCGA-KK-A8I4-01 17 21825493 21825493 C T FAM27L RNA 0.05 TCGA-KK-A8I4-01 17 38936677 38936677 C T KRT27 Missense_Mutation p.V187M 0.23 deleterious(0.03) probably_damaging(1) TCGA-KK-A8I4-01 17 73914270 73914270 G A FBF1 Missense_Mutation p.A725V 0.10 deleterious(0) probably_damaging(0.996) TCGA-KK-A8I4-01 18 74702002 74702002 C T MBP Silent p.P64P 0.12 TCGA-KK-A8I4-01 19 41758339 41758339 A G AXL Missense_Mutation p.R599G 0.12 deleterious(0.04) possibly_damaging(0.572) TCGA-KK-A8I4-01 19 51534119 51534119 G T KLK12 Nonsense_Mutation p.C172* 0.06 TCGA-KK-A8I4-01 1 119964584 119964584 T C HSD3B2 Missense_Mutation p.Y154H 0.35 deleterious(0) probably_damaging(0.999) TCGA-KK-A8I4-01 1 2537012 2537012 G A MMEL1 Silent p.G267G 0.08 TCGA-KK-A8I4-01 20 20232251 20232251 T C C20orf26 Silent p.N724N 0.09 TCGA-KK-A8I4-01 20 44669099 44669099 G A SLC12A5 Missense_Mutation p.G257S 0.22 deleterious(0) probably_damaging(1) TCGA-KK-A8I4-01 20 57876663 57876663 C T EDN3 Missense_Mutation p.A84V 0.29 tolerated(0.31) benign(0.001) TCGA-KK-A8I4-01 2 109347896 109347897 TT - RANBP2 Frame_Shift_Del p.F125Pfs*8 0.09 TCGA-KK-A8I4-01 2 113260504 113260504 G A TTL Silent p.V207V 0.26 TCGA-KK-A8I4-01 4 114275609 114275609 G A ANK2 Silent p.T1945T 0.31 TCGA-KK-A8I4-01 5 150322149 150322149 A G ZNF300P1 RNA 0.17 TCGA-KK-A8I4-01 5 179296821 179296821 G A TBC1D9B Silent p.H913H 0.34 TCGA-KK-A8I4-01 5 43296014 43296014 T A HMGCS1 Missense_Mutation p.N249Y 0.06 deleterious(0.04) benign(0.008) TCGA-KK-A8I4-01 6 57372333 57372333 C A PRIM2 Missense_Mutation p.Q247K 0.08 tolerated(0.2) possibly_damaging(0.511) TCGA-KK-A8I4-01 7 121942294 121942294 G A FEZF1 Silent p.N395N 0.04 TCGA-KK-A8I4-01 7 5036621 5036621 G A RNF216P1 RNA 0.57 TCGA-KK-A8I4-01 9 128003114 128003115 AT - HSPA5 Frame_Shift_Del p.Y65Cfs*6 0.23 TCGA-KK-A8I4-01 X 16859944 16859946 TAG - TXLNG 3'UTR 0.38 TCGA-KK-A8I5-01 10 95072931 95072931 G - MYOF Frame_Shift_Del p.P1912Lfs*12 0.38 TCGA-KK-A8I5-01 11 47360181 47360181 C T MYBPC3 Missense_Mutation p.R733H 0.14 tolerated(0.99) benign(0.007) TCGA-KK-A8I5-01 11 57413471 57413471 C T YPEL4 Missense_Mutation p.D123N 0.40 deleterious(0.02) benign(0.25) TCGA-KK-A8I5-01 11 59807922 59807922 C T OOSP2 5'UTR 0.21 TCGA-KK-A8I5-01 11 65124205 65124205 G A TIGD3 Missense_Mutation p.R309Q 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-KK-A8I5-01 11 73020726 73020726 C T ARHGEF17 Missense_Mutation p.S348F 0.35 deleterious_low_confidence(0.01) benign(0.054) TCGA-KK-A8I5-01 12 110475354 110475354 A - ANKRD13A Frame_Shift_Del p.K590Nfs*7 0.33 TCGA-KK-A8I5-01 12 27143491 27143491 A G TM7SF3 Missense_Mutation p.Y254H 0.10 deleterious(0.02) probably_damaging(0.945) TCGA-KK-A8I5-01 12 60173227 60173227 G A SLC16A7 Missense_Mutation p.E402K 0.29 tolerated(0.15) benign(0.003) TCGA-KK-A8I5-01 13 112722311 112722311 G A SOX1 Silent p.K113K 0.16 TCGA-KK-A8I5-01 14 107169934 107169934 C T IGHV1-69 Silent p.A116A 0.13 TCGA-KK-A8I5-01 15 42279575 42279575 T G PLA2G4E Splice_Site p.X611_splice 0.25 TCGA-KK-A8I5-01 16 11000408 11000408 C T CIITA Silent p.P353P 0.45 TCGA-KK-A8I5-01 16 21063004 21063004 C T DNAH3 Missense_Mutation p.D1409N 0.33 deleterious(0) probably_damaging(0.999) TCGA-KK-A8I5-01 17 42882370 42882370 C G GJC1 Silent p.P272P 0.22 TCGA-KK-A8I5-01 17 62081238 62081238 C T ICAM2 Missense_Mutation p.V139M 0.44 deleterious(0) probably_damaging(0.99) TCGA-KK-A8I5-01 19 33167292 33167292 A G RGS9BP Silent p.Q41Q 0.33 TCGA-KK-A8I5-01 19 40354448 40354448 G A FCGBP Missense_Mutation p.R5341C 0.52 probably_damaging(0.964) TCGA-KK-A8I5-01 19 41510021 41510021 C A CYP2B6 Missense_Mutation p.S96Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-KK-A8I5-01 19 49949662 49949662 G A PIH1D1 Missense_Mutation p.P284S 0.08 deleterious(0) probably_damaging(1) TCGA-KK-A8I5-01 19 51219610 51219610 G A SHANK1 Silent p.R127R 0.25 TCGA-KK-A8I5-01 19 55967760 55967760 C T ISOC2 Missense_Mutation p.A32T 0.14 tolerated(0.51) benign(0.027) TCGA-KK-A8I5-01 1 158227536 158227536 C T CD1A 3'UTR 0.21 TCGA-KK-A8I5-01 1 228346783 228346783 C T GJC2 3'UTR 0.10 TCGA-KK-A8I5-01 1 37346388 37346388 T G GRIK3 Missense_Mutation p.I133L 0.33 tolerated(0.4) benign(0.063) TCGA-KK-A8I5-01 1 52280418 52280418 C T NRD1 Missense_Mutation p.V571M 0.40 deleterious(0.02) possibly_damaging(0.889) TCGA-KK-A8I5-01 20 17207956 17207956 G C PCSK2 Missense_Mutation p.K2N 0.15 deleterious_low_confidence(0.03) benign(0.015) TCGA-KK-A8I5-01 20 31680313 31680313 G T BPIFB4 Missense_Mutation p.W398L 0.33 tolerated(0.17) benign(0) TCGA-KK-A8I5-01 2 125281979 125281979 C T CNTNAP5 Missense_Mutation p.P475L 0.18 tolerated(0.72) benign(0.003) TCGA-KK-A8I5-01 2 136527363 136527363 G A UBXN4 Silent p.R209R 0.15 TCGA-KK-A8I5-01 2 233677165 233677165 A G GIGYF2 Missense_Mutation p.I712V 0.15 benign(0.424) TCGA-KK-A8I5-01 2 40657386 40657386 G C SLC8A1 Missense_Mutation p.T12S 0.23 tolerated_low_confidence(0.42) benign(0.027) TCGA-KK-A8I5-01 3 39186547 39186547 G A CSRNP1 Missense_Mutation p.R136W 0.39 deleterious(0) probably_damaging(0.993) TCGA-KK-A8I5-01 3 39225934 39225934 G A XIRP1 Missense_Mutation p.S1668F 0.17 deleterious(0) possibly_damaging(0.548) TCGA-KK-A8I5-01 4 151505286 151505286 G A MAB21L2 3'UTR 0.23 TCGA-KK-A8I5-01 4 152212552 152212552 T G PRSS48 Missense_Mutation p.C312G 0.36 tolerated_low_confidence(0.26) benign(0.003) TCGA-KK-A8I5-01 4 155490677 155490677 C A FGB Missense_Mutation p.L324I 0.14 deleterious(0) probably_damaging(0.996) TCGA-KK-A8I5-01 4 158224787 158224787 G A GRIA2 Missense_Mutation p.G105R 0.15 deleterious(0.05) probably_damaging(0.985) TCGA-KK-A8I5-01 4 6066624 6066624 C T JAKMIP1 Missense_Mutation p.E472K 0.14 deleterious(0.01) probably_damaging(0.943) TCGA-KK-A8I5-01 5 140712441 140712441 C T PCDHGA1 Silent p.G730G 0.15 TCGA-KK-A8I5-01 5 145890149 145890149 C G TCERG1 Missense_Mutation p.R1081G 0.14 deleterious(0) unknown(0) TCGA-KK-A8I5-01 5 83356254 83356254 C T EDIL3 Silent p.Q334Q 0.17 TCGA-KK-A8I5-01 7 100371059 100371059 C A ZAN Silent p.T1859T 0.46 TCGA-KK-A8I5-01 7 126746596 126746596 A T GRM8 Nonsense_Mutation p.Y227* 0.31 TCGA-KK-A8I5-01 7 6187373 6187373 C T USP42 Silent p.S412S 0.19 TCGA-KK-A8I5-01 8 22137065 22137065 G A PIWIL2 Missense_Mutation p.E56K 0.34 tolerated_low_confidence(0.43) benign(0.034) TCGA-KK-A8I5-01 9 134077101 134077101 C T NUP214 Silent p.G1863G 0.06 TCGA-KK-A8I5-01 X 102968708 102968708 T A TMEM31 Missense_Mutation p.F97I 0.33 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-KK-A8I6-01 10 123970988 123970988 T G TACC2 Missense_Mutation p.F2350V 0.12 probably_damaging(0.996) TCGA-KK-A8I6-01 10 129907280 129907280 C A MKI67 Missense_Mutation p.D942Y 0.27 deleterious(0.01) benign(0.15) TCGA-KK-A8I6-01 10 25464746 25464746 A C GPR158 Missense_Mutation p.T133P 0.06 deleterious(0) possibly_damaging(0.866) TCGA-KK-A8I6-01 10 89692911 89692911 G T PTEN Missense_Mutation p.G132V 0.21 deleterious(0) probably_damaging(0.998) TCGA-KK-A8I6-01 11 120198157 120198157 T C TMEM136 Silent p.L25L 0.11 TCGA-KK-A8I6-01 11 36597054 36597054 G C RAG1 Missense_Mutation p.D734H 0.11 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-KK-A8I6-01 11 45937359 45937359 C T PEX16 Nonsense_Mutation p.W85* 0.07 TCGA-KK-A8I6-01 11 51412102 51412102 C A OR4A5 Missense_Mutation p.Q98H 0.37 deleterious_low_confidence(0.01) benign(0.167) TCGA-KK-A8I6-01 11 5537357 5537357 G A UBQLNL Silent p.G105G 0.07 TCGA-KK-A8I6-01 11 65793293 65793293 G A CATSPER1 Silent p.P186P 0.08 TCGA-KK-A8I6-01 12 46244876 46244876 G A ARID2 Silent p.S990S 0.09 TCGA-KK-A8I6-01 12 6711235 6711235 T C CHD4 Missense_Mutation p.Y110C 0.19 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-KK-A8I6-01 12 82796857 82796857 T C METTL25 Silent p.S409S 0.13 TCGA-KK-A8I6-01 14 47600938 47600938 A C MDGA2 Missense_Mutation p.F302V 0.24 tolerated(0.05) probably_damaging(0.996) TCGA-KK-A8I6-01 16 3304558 3304558 G A MEFV Silent p.D170D 0.33 TCGA-KK-A8I6-01 16 57608859 57608859 A T GPR114 Silent p.A447A 0.12 TCGA-KK-A8I6-01 19 15852463 15852463 C T OR10H3 Silent p.L87L 0.03 TCGA-KK-A8I6-01 19 19627082 19627082 C T NDUFA13 Missense_Mutation p.P12L 0.31 deleterious(0) probably_damaging(0.999) TCGA-KK-A8I6-01 19 40316880 40316880 G C DYRK1B Missense_Mutation p.S486R 0.35 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-KK-A8I6-01 19 54667527 54667527 C T TMC4 Silent p.P408P 0.40 TCGA-KK-A8I6-01 1 86898058 86898058 A G CLCA2 Silent p.S197S 0.07 TCGA-KK-A8I6-01 20 4837449 4837449 G A SLC23A2 3'UTR 0.15 TCGA-KK-A8I6-01 2 102486832 102486832 G A MAP4K4 Silent p.E824E 0.19 TCGA-KK-A8I6-01 2 141232707 141232707 C T LRP1B Missense_Mutation p.V3209I 0.13 benign(0.097) TCGA-KK-A8I6-01 2 169826554 169826554 C A ABCB11 Splice_Site p.X603_splice 0.04 TCGA-KK-A8I6-01 2 201515849 201515849 T G AOX1 Missense_Mutation p.N1000K 0.08 deleterious(0) probably_damaging(0.96) TCGA-KK-A8I6-01 2 73115592 73115592 G A SPR Missense_Mutation p.V152M 0.05 deleterious(0.01) probably_damaging(0.959) TCGA-KK-A8I6-01 3 49760869 49760869 T G GMPPB Missense_Mutation p.M56L 0.13 tolerated(0.07) benign(0.007) TCGA-KK-A8I6-01 4 79254489 79254489 C T FRAS1 Missense_Mutation p.P734L 0.39 benign(0.097) TCGA-KK-A8I6-01 6 152420001 152420001 C T ESR1 Missense_Mutation p.T563M 0.10 tolerated(0.12) benign(0.009) TCGA-KK-A8I6-01 6 75827179 75827179 C T COL12A1 Missense_Mutation p.V2480M 0.06 probably_damaging(1) TCGA-KK-A8I6-01 7 12666373 12666373 G A SCIN Silent p.P382P 0.18 TCGA-KK-A8I6-01 8 113237027 113237027 G T CSMD3 Missense_Mutation p.N3699K 0.31 deleterious(0.01) possibly_damaging(0.65) TCGA-KK-A8I6-01 8 95416419 95416419 T C RAD54B Missense_Mutation p.N277S 0.32 deleterious(0.04) benign(0.252) TCGA-KK-A8I6-01 9 125154632 125154632 C T PTGS1 Missense_Mutation p.P537S 0.06 deleterious(0.01) probably_damaging(0.967) TCGA-KK-A8I6-01 9 138591340 138591340 C T SOHLH1 5'UTR 0.56 TCGA-KK-A8I6-01 X 153588855 153588855 G A FLNA Missense_Mutation p.T1103M 0.80 deleterious(0) probably_damaging(0.999) TCGA-KK-A8I7-01 10 127693527 127693527 C T FANK1 Missense_Mutation p.A205V 0.08 tolerated(0.34) benign(0.16) TCGA-KK-A8I7-01 11 134029950 134029950 C T NCAPD3 Missense_Mutation p.R1235Q 0.12 deleterious(0.03) benign(0.135) TCGA-KK-A8I7-01 12 49110487 49110487 G C CCNT1 5'UTR 0.06 TCGA-KK-A8I7-01 12 49170258 49170258 G A ADCY6 Silent p.S496S 0.11 TCGA-KK-A8I7-01 14 90429610 90429610 C A TDP1 Missense_Mutation p.A51D 0.06 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-KK-A8I7-01 15 43816202 43816202 C T MAP1A Missense_Mutation p.S844L 0.12 probably_damaging(0.998) TCGA-KK-A8I7-01 15 56680674 56680674 C G TEX9 Missense_Mutation p.L90V 0.12 tolerated(0.19) benign(0.009) TCGA-KK-A8I7-01 17 39767650 39767650 G A KRT16 Nonsense_Mutation p.Q240* 0.12 TCGA-KK-A8I7-01 19 46393884 46393884 C T MYPOP Silent p.P399P 0.06 TCGA-KK-A8I7-01 1 100111798 100111798 C T PALMD 5'UTR 0.08 TCGA-KK-A8I7-01 1 161967655 161967655 C T OLFML2B Silent p.T478T 0.06 TCGA-KK-A8I7-01 1 76384632 76384632 G A ASB17 3'UTR 0.06 TCGA-KK-A8I7-01 1 84948626 84948626 T C RPF1 Missense_Mutation p.I105T 0.07 deleterious(0) probably_damaging(0.924) TCGA-KK-A8I7-01 21 19666747 19666747 G C TMPRSS15 Missense_Mutation p.L776V 0.07 tolerated(0.1) possibly_damaging(0.515) TCGA-KK-A8I7-01 3 136062803 136062803 A C STAG1 Missense_Mutation p.I1106S 0.11 tolerated(0.57) benign(0.012) TCGA-KK-A8I7-01 4 72313391 72313391 G A SLC4A4 Missense_Mutation p.G332R 0.09 deleterious(0) probably_damaging(0.936) TCGA-KK-A8I7-01 5 135508269 135508269 A T SMAD5 Nonsense_Mutation p.R308* 0.10 TCGA-KK-A8I7-01 6 112430676 112430676 G A LAMA4 Silent p.S1812S 0.05 TCGA-KK-A8I7-01 7 134252993 134252993 G A AKR1B15 Silent p.E78E 0.11 TCGA-KK-A8I7-01 7 65154327 65154327 T C INTS4L2 RNA 0.08 TCGA-KK-A8I7-01 8 139263143 139263143 C A FAM135B Silent p.L161L 0.18 TCGA-KK-A8I7-01 9 84202651 84202651 C T TLE1 Missense_Mutation p.R641K 0.07 deleterious(0.04) probably_damaging(1) TCGA-KK-A8I7-01 X 117532360 117532360 G A WDR44 Missense_Mutation p.A401T 0.06 tolerated(0.19) benign(0.003) TCGA-KK-A8I7-01 X 3239659 3239659 C T MXRA5 Missense_Mutation p.R1356H 0.18 tolerated(0.24) benign(0) TCGA-KK-A8I8-01 10 73437354 73437354 G T CDH23 Missense_Mutation p.L144F 0.56 deleterious(0) probably_damaging(0.951) TCGA-KK-A8I8-01 11 48510647 48510647 C T OR4A47 Silent p.I101I 0.42 TCGA-KK-A8I8-01 11 65123573 65123573 G A TIGD3 Silent p.T98T 0.37 TCGA-KK-A8I8-01 12 52761081 52761081 C T KRT85 Missense_Mutation p.A37T 0.11 tolerated(0.06) probably_damaging(0.99) TCGA-KK-A8I8-01 12 56646642 56646642 T C ANKRD52 Missense_Mutation p.H408R 0.38 tolerated(0.15) benign(0.001) TCGA-KK-A8I8-01 13 20763342 20763342 G A GJB2 Missense_Mutation p.R127C 0.34 deleterious(0) benign(0.423) TCGA-KK-A8I8-01 14 102548543 102548543 A T HSP90AA1 Nonsense_Mutation p.L787* 0.27 TCGA-KK-A8I8-01 14 52508861 52508861 A T NID2 Nonsense_Mutation p.L596* 0.35 TCGA-KK-A8I8-01 15 74468241 74468241 G A ISLR Missense_Mutation p.G348S 0.35 tolerated(0.19) possibly_damaging(0.882) TCGA-KK-A8I8-01 19 49636536 49636536 G A PPFIA3 Missense_Mutation p.A357T 0.09 deleterious(0.02) benign(0.098) TCGA-KK-A8I8-01 19 49994200 49994200 T - RPL13A Intron 0.34 TCGA-KK-A8I8-01 1 43788415 43788415 G A TIE1 3'UTR 0.33 TCGA-KK-A8I8-01 20 43929859 43929859 C A MATN4 Missense_Mutation p.D258Y 0.04 possibly_damaging(0.813) TCGA-KK-A8I8-01 21 38536463 38536463 G A TTC3 Missense_Mutation p.R1094H 0.31 tolerated(0.12) benign(0.016) TCGA-KK-A8I8-01 22 21327704 21327704 G A AIFM3 Missense_Mutation p.R47H 0.41 tolerated_low_confidence(0.07) possibly_damaging(0.855) TCGA-KK-A8I8-01 2 178386036 178386036 C T AGPS Silent p.F579F 0.30 TCGA-KK-A8I8-01 2 28004467 28004467 T A RBKS 3'UTR 0.23 TCGA-KK-A8I8-01 2 38893251 38893251 C G GALM 5'UTR 0.40 TCGA-KK-A8I8-01 2 86258685 86258685 C T POLR1A Missense_Mutation p.R1449Q 0.41 tolerated(0.52) benign(0.003) TCGA-KK-A8I8-01 3 108572734 108572734 G T TRAT1 3'UTR 0.37 TCGA-KK-A8I8-01 4 109000748 109000748 C T LEF1 Missense_Mutation p.G249S 0.06 tolerated(0.45) probably_damaging(0.999) TCGA-KK-A8I8-01 4 153897503 153897503 G A FHDC1 Silent p.P1020P 0.08 TCGA-KK-A8I8-01 4 57777036 57777036 C T REST Missense_Mutation p.P78S 0.06 deleterious(0.03) possibly_damaging(0.901) TCGA-KK-A8I8-01 4 89363614 89363614 C T HERC6 3'UTR 0.44 TCGA-KK-A8I8-01 4 91229784 91229784 G T CCSER1 Missense_Mutation p.V117F 0.06 tolerated(0.57) possibly_damaging(0.73) TCGA-KK-A8I8-01 5 140257309 140257309 C T PCDHA12 Missense_Mutation p.S751L 0.41 deleterious_low_confidence(0.02) benign(0.15) TCGA-KK-A8I8-01 7 100320815 100320815 A C EPO 3'UTR 0.55 TCGA-KK-A8I8-01 7 92735120 92735120 T C SAMD9 Silent p.K97K 0.30 TCGA-KK-A8I8-01 9 140392628 140392628 G A PNPLA7 Silent p.F609F 0.23 TCGA-KK-A8I9-01 10 102050257 102050257 A G PKD2L1 Missense_Mutation p.I676T 0.12 tolerated(0.19) benign(0.018) TCGA-KK-A8I9-01 10 105953648 105953648 G A WDR96 Missense_Mutation p.S473L 0.11 deleterious(0.02) benign(0.3) TCGA-KK-A8I9-01 10 35305223 35305223 C G CUL2 Missense_Mutation p.S614T 0.31 tolerated(1) benign(0.003) TCGA-KK-A8I9-01 10 871034 871034 G - LARP4B Frame_Shift_Del p.E486Nfs*6 0.17 TCGA-KK-A8I9-01 10 98715014 98715014 G A LCOR Missense_Mutation p.G213S 0.07 tolerated(0.46) probably_damaging(0.934) TCGA-KK-A8I9-01 11 108357013 108357013 C A KDELC2 Missense_Mutation p.R185S 0.07 deleterious(0.02) possibly_damaging(0.876) TCGA-KK-A8I9-01 11 134073069 134073072 CTCT - NCAPD3 Frame_Shift_Del p.E497Vfs*7 0.12 TCGA-KK-A8I9-01 11 62414787 62414787 G A INTS5 Missense_Mutation p.P922L 0.03 deleterious(0) possibly_damaging(0.846) TCGA-KK-A8I9-01 11 71260209 71260209 T G KRTAP5-9 Missense_Mutation p.I169S 0.27 deleterious_low_confidence(0) unknown(0) TCGA-KK-A8I9-01 11 7662824 7662824 C G PPFIBP2 Missense_Mutation p.P497R 0.09 tolerated(0.12) probably_damaging(0.999) TCGA-KK-A8I9-01 11 95595463 95595463 A G MTMR2 Silent p.Y110Y 0.17 TCGA-KK-A8I9-01 12 110618302 110618302 A G IFT81 Missense_Mutation p.K422E 0.23 tolerated(0.13) benign(0.086) TCGA-KK-A8I9-01 12 117465245 117465245 G A FBXW8 Missense_Mutation p.A530T 0.13 deleterious(0) possibly_damaging(0.893) TCGA-KK-A8I9-01 12 121164962 121164962 G A ACADS Silent p.V60V 0.14 TCGA-KK-A8I9-01 12 53776771 53776771 C A SP1 Nonsense_Mutation p.S347* 0.08 TCGA-KK-A8I9-01 12 72372850 72372850 C T TPH2 Silent p.P308P 0.08 TCGA-KK-A8I9-01 14 36982437 36982437 C T SFTA3 5'UTR 0.20 TCGA-KK-A8I9-01 15 25462407 25462407 G C SNORD115-27 5'Flank 0.30 TCGA-KK-A8I9-01 15 52902265 52902265 A C FAM214A Missense_Mutation p.H282Q 0.21 tolerated(0.05) possibly_damaging(0.461) TCGA-KK-A8I9-01 15 92977487 92977487 G T ST8SIA2 Missense_Mutation p.V58L 0.21 benign(0.001) TCGA-KK-A8I9-01 16 30750172 30750172 A G SRCAP Silent p.R2937R 0.16 TCGA-KK-A8I9-01 16 30750173 30750173 A C SRCAP Silent p.R2938R 0.16 TCGA-KK-A8I9-01 17 47696431 47696431 C A SPOP Missense_Mutation p.W131L 0.24 deleterious(0.05) possibly_damaging(0.831) TCGA-KK-A8I9-01 17 56084419 56084419 A T SRSF1 Missense_Mutation p.I27N 0.08 deleterious(0) probably_damaging(0.979) TCGA-KK-A8I9-01 18 21083629 21083629 A C C18orf8 Missense_Mutation p.Q16P 0.08 deleterious(0.01) benign(0.012) TCGA-KK-A8I9-01 19 14772884 14772884 G A EMR3 Silent p.N82N 0.23 TCGA-KK-A8I9-01 19 58499976 58499976 G A ZNF606 Silent p.H97H 0.22 TCGA-KK-A8I9-01 1 112042982 112042982 G A ADORA3 Intron 0.28 TCGA-KK-A8I9-01 1 145532146 145532146 C T ITGA10 Nonsense_Mutation p.R264* 0.13 TCGA-KK-A8I9-01 1 182355539 182355539 T C GLUL Splice_Site p.X110_splice 0.19 TCGA-KK-A8I9-01 1 186648244 186648244 C T PTGS2 Missense_Mutation p.V87I 0.16 tolerated(1) benign(0.001) TCGA-KK-A8I9-01 1 208218421 208218421 G C PLXNA2 Missense_Mutation p.H1210Q 0.28 tolerated(0.37) probably_damaging(0.978) TCGA-KK-A8I9-01 1 36054078 36054078 C T TFAP2E Missense_Mutation p.T237M 0.09 deleterious(0) probably_damaging(0.997) TCGA-KK-A8I9-01 20 50769705 50769705 A T ZFP64 Silent p.P342P 0.20 TCGA-KK-A8I9-01 21 44180975 44180975 C T PDE9A Missense_Mutation p.A348V 0.19 deleterious(0) probably_damaging(0.961) TCGA-KK-A8I9-01 22 40366977 40366977 C T GRAP2 Silent p.S294S 0.07 TCGA-KK-A8I9-01 2 61128140 61128140 G C REL Missense_Mutation p.G106R 0.10 deleterious(0) probably_damaging(1) TCGA-KK-A8I9-01 2 61128141 61128141 G T REL Missense_Mutation p.G106V 0.10 deleterious(0) probably_damaging(1) TCGA-KK-A8I9-01 3 121417402 121417402 T G GOLGB1 Missense_Mutation p.E656D 0.22 benign(0.012) TCGA-KK-A8I9-01 3 179754428 179754428 G A PEX5L 5'UTR 0.06 TCGA-KK-A8I9-01 3 48436179 48436179 T C FBXW12 3'UTR 0.10 TCGA-KK-A8I9-01 4 2822436 2822436 G C SH3BP2 Missense_Mutation p.G88A 0.10 deleterious(0.01) probably_damaging(1) TCGA-KK-A8I9-01 4 48027157 48027157 T A NIPAL1 Missense_Mutation p.L40Q 0.10 tolerated(0.6) benign(0.002) TCGA-KK-A8I9-01 5 41909968 41909968 G C C5orf51 Missense_Mutation p.V110L 0.05 tolerated(0.08) benign(0.04) TCGA-KK-A8I9-01 6 64422100 64422100 A G PHF3 Missense_Mutation p.E1539G 0.19 tolerated(0.41) benign(0) TCGA-KK-A8I9-01 6 83900533 83900533 G A PGM3 Missense_Mutation p.P95S 0.12 deleterious(0) probably_damaging(0.98) TCGA-KK-A8I9-01 7 151836271 151836271 C G KMT2C Missense_Mutation p.R4845T 0.18 probably_damaging(0.999) TCGA-KK-A8I9-01 8 123965724 123965724 C T ZHX2 Silent p.Y658Y 0.13 TCGA-KK-A8I9-01 9 19050073 19050073 T A RRAGA Missense_Mutation p.L139Q 0.18 tolerated(0.56) benign(0.026) TCGA-KK-A8I9-01 9 21227906 21227906 A T IFNA17 Missense_Mutation p.N89K 0.10 tolerated(0.07) benign(0.2) TCGA-KK-A8I9-01 9 79117309 79117309 G A GCNT1 Silent p.T4T 0.04 TCGA-KK-A8IA-01 10 49430493 49430493 G T FRMPD2 Missense_Mutation p.H440N 0.05 deleterious(0.02) benign(0.026) TCGA-KK-A8IA-01 10 76784946 76784949 ACAA - KAT6B Frame_Shift_Del p.T1203Rfs*21 0.40 TCGA-KK-A8IA-01 11 59860884 59860884 C G MS4A2 Missense_Mutation p.S130R 0.24 tolerated(0.39) benign(0.078) TCGA-KK-A8IA-01 11 7846597 7846597 T C OR5P3 Missense_Mutation p.K308R 0.06 tolerated_low_confidence(0.19) benign(0.01) TCGA-KK-A8IA-01 12 119583287 119583287 G A SRRM4 Silent p.T291T 0.31 TCGA-KK-A8IA-01 12 69250317 69250317 G A CPM Missense_Mutation p.P411L 0.43 deleterious(0) possibly_damaging(0.681) TCGA-KK-A8IA-01 14 74995318 74995318 C T LTBP2 Missense_Mutation p.E746K 0.58 tolerated(0.18) possibly_damaging(0.524) TCGA-KK-A8IA-01 16 2331461 2331461 G A ABCA3 Missense_Mutation p.A1362V 0.32 tolerated(0.23) benign(0.005) TCGA-KK-A8IA-01 16 57099144 57099144 A G NLRC5 Missense_Mutation p.D1392G 0.33 tolerated(0.59) benign(0.001) TCGA-KK-A8IA-01 16 81078137 81078137 C T ATMIN Silent p.L678L 0.67 TCGA-KK-A8IA-01 17 79990859 79990859 G A RAC3 Missense_Mutation p.A88T 0.40 tolerated_low_confidence(0.21) benign(0.014) TCGA-KK-A8IA-01 18 12337420 12337420 C T AFG3L2 Missense_Mutation p.D699N 0.14 tolerated(0.29) benign(0.014) TCGA-KK-A8IA-01 19 49183691 49183691 G A RN7SL345P 5'Flank 0.41 TCGA-KK-A8IA-01 19 50365803 50365803 C G PNKP Missense_Mutation p.D310H 0.44 deleterious(0) probably_damaging(1) TCGA-KK-A8IA-01 19 51165266 51165266 G A SHANK1 Missense_Mutation p.R2148C 0.28 unknown(0) TCGA-KK-A8IA-01 19 9083587 9083587 G A MUC16 Missense_Mutation p.S2743L 0.07 unknown(0) TCGA-KK-A8IA-01 1 158669500 158669500 C T OR6K2 Missense_Mutation p.V315I 0.36 tolerated(0.2) benign(0.003) TCGA-KK-A8IA-01 1 159778953 159778953 C A FCRL6 Missense_Mutation p.D174E 0.44 deleterious(0.01) probably_damaging(0.931) TCGA-KK-A8IA-01 1 186088390 186088390 G A HMCN1 Silent p.A3972A 0.40 TCGA-KK-A8IA-01 20 2843245 2843245 C T VPS16 Silent p.D364D 0.53 TCGA-KK-A8IA-01 20 57767047 57767047 A G ZNF831 Missense_Mutation p.K325E 0.32 deleterious(0) probably_damaging(0.994) TCGA-KK-A8IA-01 2 271876 271876 T G ACP1 Missense_Mutation p.C18W 0.49 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IA-01 2 71361867 71361867 T C MPHOSPH10 Silent p.V346V 0.06 TCGA-KK-A8IA-01 2 89442098 89442098 C A IGKV3-20 Missense_Mutation p.D103Y 0.26 deleterious(0) probably_damaging(1) TCGA-KK-A8IA-01 3 147108912 147108913 - C ZIC4 Frame_Shift_Ins p.C321Lfs*13 0.35 TCGA-KK-A8IA-01 3 147128235 147128235 G A ZIC1 Silent p.A112A 0.37 TCGA-KK-A8IA-01 3 184046495 184046496 - T EIF4G1 Frame_Shift_Ins p.T1352Nfs*46 0.30 TCGA-KK-A8IA-01 3 39174617 39174617 A G TTC21A Silent p.Q886Q 0.28 TCGA-KK-A8IA-01 3 53809970 53809970 C T CACNA1D Silent p.L1440L 0.40 TCGA-KK-A8IA-01 4 140265373 140265373 G A NAA15 Missense_Mutation p.E191K 0.19 deleterious(0) possibly_damaging(0.734) TCGA-KK-A8IA-01 4 155253944 155253944 G A DCHS2 Missense_Mutation p.T640M 0.42 deleterious(0) possibly_damaging(0.646) TCGA-KK-A8IA-01 4 96762571 96762571 A G PDHA2 3'UTR 0.42 TCGA-KK-A8IA-01 5 11023079 11023079 A C CTNND2 Missense_Mutation p.M934R 0.35 deleterious(0) possibly_damaging(0.745) TCGA-KK-A8IA-01 6 152711423 152711423 G A SYNE1 Silent p.H2723H 0.41 TCGA-KK-A8IA-01 6 159653528 159653528 G A FNDC1 Missense_Mutation p.A662T 0.43 tolerated_low_confidence(0.36) unknown(0) TCGA-KK-A8IA-01 6 160174524 160174524 G C WTAP Missense_Mutation p.R162P 0.39 deleterious(0) probably_damaging(1) TCGA-KK-A8IA-01 6 4130794 4130794 C A ECI2 Nonsense_Mutation p.E105* 0.37 TCGA-KK-A8IA-01 6 76023240 76023240 G A FILIP1 Missense_Mutation p.L770F 0.36 tolerated(0.22) benign(0.003) TCGA-KK-A8IA-01 7 53103840 53103840 G A POM121L12 Missense_Mutation p.R159H 0.58 tolerated(0.15) probably_damaging(0.923) TCGA-KK-A8IA-01 7 73520433 73520433 C G LIMK1 Missense_Mutation p.S247R 0.39 deleterious(0.02) possibly_damaging(0.833) TCGA-KK-A8IA-01 8 12600768 12600768 T G LONRF1 Missense_Mutation p.I249L 0.77 tolerated(0.54) benign(0.001) TCGA-KK-A8IA-01 X 151093031 151093031 C T MAGEA4 Missense_Mutation p.R299C 0.08 deleterious(0.02) benign(0.004) TCGA-KK-A8IB-01 10 126672053 126672053 A G ZRANB1 Silent p.E568E 0.16 TCGA-KK-A8IB-01 11 126432745 126432745 G A KIRREL3 Missense_Mutation p.R40W 0.21 deleterious_low_confidence(0.02) probably_damaging(0.973) TCGA-KK-A8IB-01 11 1605854 1605854 C T KRTAP5-1 Missense_Mutation p.G209D 0.12 unknown(0) TCGA-KK-A8IB-01 11 66082816 66082816 G A CD248 Silent p.L561L 0.09 TCGA-KK-A8IB-01 11 71850740 71850740 C G FOLR3 Missense_Mutation p.N243K 0.08 tolerated(0.07) benign(0.201) TCGA-KK-A8IB-01 11 86055702 86055702 C T C11orf73 Nonsense_Mutation p.Q160* 0.08 TCGA-KK-A8IB-01 12 122107369 122107369 T C MORN3 Silent p.P7P 0.07 TCGA-KK-A8IB-01 12 27152541 27152541 C T TM7SF3 Silent p.Q105Q 0.27 TCGA-KK-A8IB-01 12 49420696 49420696 G A KMT2D Missense_Mutation p.T5018I 0.10 unknown(0) TCGA-KK-A8IB-01 12 49420990 49420990 G C KMT2D Missense_Mutation p.P4920R 0.15 unknown(0) TCGA-KK-A8IB-01 13 33703513 33703513 C T STARD13 Missense_Mutation p.G434D 0.09 tolerated(0.33) benign(0.003) TCGA-KK-A8IB-01 13 35619496 35619496 C T NBEA Silent p.H227H 0.13 TCGA-KK-A8IB-01 13 46542010 46542010 T A ZC3H13 Missense_Mutation p.D1317V 0.22 unknown(0) TCGA-KK-A8IB-01 14 102482692 102482692 C G DYNC1H1 Missense_Mutation p.L2494V 0.11 benign(0.176) TCGA-KK-A8IB-01 14 38061231 38061231 A T FOXA1 Missense_Mutation p.M253K 0.10 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IB-01 14 75022226 75022226 T C LTBP2 Missense_Mutation p.E334G 0.13 tolerated(0.23) benign(0.001) TCGA-KK-A8IB-01 14 96730362 96730362 G C BDKRB1 Missense_Mutation p.G115R 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-KK-A8IB-01 15 75114226 75114226 C T LMAN1L Silent p.S372S 0.16 TCGA-KK-A8IB-01 15 90348339 90348339 G A ANPEP Silent p.Y289Y 0.15 TCGA-KK-A8IB-01 16 46694501 46694501 T G VPS35 Missense_Mutation p.E758D 0.18 tolerated(0.29) benign(0) TCGA-KK-A8IB-01 17 76462786 76462786 G A DNAH17 Missense_Mutation p.A2950V 0.16 probably_damaging(0.967) TCGA-KK-A8IB-01 18 22805204 22805204 G A ZNF521 Missense_Mutation p.A893V 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-KK-A8IB-01 19 38976759 38976759 G A RYR1 Missense_Mutation p.G1822S 0.16 probably_damaging(0.937) TCGA-KK-A8IB-01 1 152281367 152281367 A G FLG Missense_Mutation p.S1999P 0.15 possibly_damaging(0.637) TCGA-KK-A8IB-01 1 158369196 158369196 G A OR10T2 Silent p.L21L 0.12 TCGA-KK-A8IB-01 1 161069373 161069373 T A KLHDC9 Intron 0.05 TCGA-KK-A8IB-01 1 17355219 17355219 G A SDHB Missense_Mutation p.S100F 0.08 deleterious(0) probably_damaging(1) TCGA-KK-A8IB-01 1 19489045 19489045 C T UBR4 Missense_Mutation p.A1609T 0.06 probably_damaging(0.998) TCGA-KK-A8IB-01 1 28212408 28212408 T G THEMIS2 Missense_Mutation p.L636R 0.19 tolerated(0.53) benign(0.118) TCGA-KK-A8IB-01 1 57161715 57161715 A G PRKAA2 Missense_Mutation p.K224R 0.04 tolerated(0.54) benign(0.124) TCGA-KK-A8IB-01 20 9370528 9370528 T G PLCB4 Missense_Mutation p.D387E 0.14 tolerated(0.14) benign(0.06) TCGA-KK-A8IB-01 2 113260632 113260632 C A TTL Nonsense_Mutation p.S250* 0.06 TCGA-KK-A8IB-01 2 185801658 185801658 A C ZNF804A Missense_Mutation p.E512A 0.15 deleterious(0.01) benign(0.076) TCGA-KK-A8IB-01 2 201846387 201846387 C T FAM126B Missense_Mutation p.R400Q 0.35 tolerated(0.1) benign(0.026) TCGA-KK-A8IB-01 2 20402409 20402409 G A SDC1 3'UTR 0.14 TCGA-KK-A8IB-01 2 230656648 230656649 TC - TRIP12 Frame_Shift_Del p.E1375Ifs*4 0.12 TCGA-KK-A8IB-01 2 7179870 7179870 C T RNF144A Silent p.D286D 0.10 TCGA-KK-A8IB-01 3 151165279 151165279 A G IGSF10 Silent p.D830D 0.05 TCGA-KK-A8IB-01 3 16252698 16252698 G A GALNT15 Missense_Mutation p.D383N 0.23 deleterious(0) possibly_damaging(0.906) TCGA-KK-A8IB-01 3 436435 436435 C A CHL1 Missense_Mutation p.P992T 0.22 tolerated(1) benign(0.096) TCGA-KK-A8IB-01 5 140783254 140783254 G T PCDHGA9 Silent p.R245R 0.15 TCGA-KK-A8IB-01 5 45695903 45695903 A C HCN1 Missense_Mutation p.F98C 0.19 deleterious(0) probably_damaging(0.993) TCGA-KK-A8IB-01 5 98216807 98216807 T G CHD1 Silent p.V1011V 0.24 TCGA-KK-A8IB-01 6 118786408 118786408 C T CEP85L 3'UTR 0.25 TCGA-KK-A8IB-01 6 121624880 121624882 AGT - TBC1D32 In_Frame_Del p.T321del 0.13 TCGA-KK-A8IB-01 6 152676065 152676065 A T SYNE1 Missense_Mutation p.V3552E 0.07 benign(0.064) TCGA-KK-A8IB-01 6 154412384 154412384 C T OPRM1 Missense_Mutation p.T407M 0.19 tolerated(0.07) probably_damaging(0.909) TCGA-KK-A8IB-01 6 39272357 39272357 G A KCNK17 Missense_Mutation p.L143F 0.12 deleterious(0.01) probably_damaging(1) TCGA-KK-A8IB-01 7 123269122 123269122 T C ASB15 Silent p.V358V 0.40 TCGA-KK-A8IB-01 7 66563653 66563653 T C TYW1 Missense_Mutation p.C504R 0.05 tolerated(1) benign(0.001) TCGA-KK-A8IB-01 8 59343160 59343160 G T UBXN2B Nonsense_Mutation p.E91* 0.27 TCGA-KK-A8IB-01 9 100962536 100962536 G A TBC1D2 Missense_Mutation p.R849W 0.32 deleterious(0) probably_damaging(0.992) TCGA-KK-A8IB-01 9 129641861 129641861 C G ZBTB34 Missense_Mutation p.F57L 0.06 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IB-01 X 132437323 132437323 T A GPC4 Missense_Mutation p.N447Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IB-01 X 73963818 73963818 T A KIAA2022 Missense_Mutation p.N192Y 0.10 deleterious(0.02) possibly_damaging(0.506) TCGA-KK-A8IB-01 X 92964856 92964856 G A FAM133A Silent p.T146T 0.36 TCGA-KK-A8IC-01 10 124050622 124050622 A G BTBD16 Missense_Mutation p.Y168C 0.22 deleterious(0.02) probably_damaging(1) TCGA-KK-A8IC-01 10 134909215 134909215 G A GPR123 Intron 0.12 TCGA-KK-A8IC-01 11 55371196 55371196 G A OR4C11 Silent p.V218V 0.25 TCGA-KK-A8IC-01 12 1553813 1553813 G A ERC1 Missense_Mutation p.R1037Q 0.18 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-KK-A8IC-01 15 31334212 31334212 C T TRPM1 Missense_Mutation p.E694K 0.15 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IC-01 18 22806306 22806306 A G ZNF521 Missense_Mutation p.S526P 0.25 deleterious(0.02) possibly_damaging(0.676) TCGA-KK-A8IC-01 19 4664930 4664930 C A C19orf10 Missense_Mutation p.G82V 0.14 tolerated(0.06) possibly_damaging(0.583) TCGA-KK-A8IC-01 19 59060418 59060418 A T TRIM28 Missense_Mutation p.E491D 0.21 deleterious(0.01) possibly_damaging(0.681) TCGA-KK-A8IC-01 19 9045763 9045763 G A MUC16 Silent p.T11956T 0.17 TCGA-KK-A8IC-01 1 157773734 157773734 C T FCRL1 Missense_Mutation p.A74T 0.11 tolerated(0.11) benign(0.018) TCGA-KK-A8IC-01 1 158747100 158747100 G A OR6N2 Missense_Mutation p.A109V 0.23 tolerated(0.5) benign(0.302) TCGA-KK-A8IC-01 1 201195063 201195063 C T IGFN1 Missense_Mutation p.A3533V 0.24 benign(0.119) TCGA-KK-A8IC-01 1 248487019 248487019 C T OR2M7 Missense_Mutation p.M284I 0.11 tolerated(0.06) benign(0.014) TCGA-KK-A8IC-01 3 158428676 158428676 C G RARRES1 Missense_Mutation p.R129P 0.23 tolerated(0.08) possibly_damaging(0.786) TCGA-KK-A8IC-01 4 85569757 85569757 C T CDS1 Missense_Mutation p.P435L 0.20 tolerated(0.1) benign(0.167) TCGA-KK-A8IC-01 6 79672824 79672824 C T PHIP Silent p.L1175L 0.04 TCGA-KK-A8IC-01 8 106814523 106814523 G A ZFPM2 Missense_Mutation p.R738H 0.19 deleterious(0) probably_damaging(0.998) TCGA-KK-A8IC-01 8 68084687 68084687 G A CSPP1 Missense_Mutation p.M950I 0.13 deleterious(0.01) benign(0.208) TCGA-KK-A8IC-01 8 74205006 74205006 A C RPL7 Missense_Mutation p.V14G 0.13 deleterious(0) unknown(0) TCGA-KK-A8ID-01 10 26581461 26581462 - A GAD2 Frame_Shift_Ins p.N487Kfs*6 0.12 TCGA-KK-A8ID-01 11 113265773 113265773 G T ANKK1 Missense_Mutation p.K201N 0.25 deleterious(0.01) possibly_damaging(0.776) TCGA-KK-A8ID-01 11 124755084 124755084 G T ROBO4 Missense_Mutation p.P952T 0.34 deleterious(0.04) possibly_damaging(0.641) TCGA-KK-A8ID-01 11 62569242 62569242 T A NXF1 Missense_Mutation p.E203V 0.38 deleterious(0.01) benign(0.036) TCGA-KK-A8ID-01 12 132611200 132611200 G A RP13-977J11.5 RNA 0.38 TCGA-KK-A8ID-01 12 64502788 64502788 G A SRGAP1 Silent p.V630V 0.41 TCGA-KK-A8ID-01 12 83424606 83424606 C T TMTC2 Silent p.F700F 0.34 TCGA-KK-A8ID-01 13 21006359 21006359 G T CRYL1 Missense_Mutation p.T172N 0.17 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-KK-A8ID-01 13 27256890 27256890 C T WASF3 Missense_Mutation p.S377F 0.36 tolerated(0.19) benign(0.166) TCGA-KK-A8ID-01 14 101528409 101528409 G A MIR377 RNA 0.27 TCGA-KK-A8ID-01 14 99642454 99642454 G T BCL11B Missense_Mutation p.A240E 0.18 deleterious(0) probably_damaging(1) TCGA-KK-A8ID-01 15 25605555 25605555 C T UBE3A Silent p.V579V 0.51 TCGA-KK-A8ID-01 16 17292238 17292238 C T XYLT1 Missense_Mutation p.V374I 0.08 tolerated(0.13) benign(0.156) TCGA-KK-A8ID-01 16 30036752 30036752 C T FAM57B Missense_Mutation p.G193R 0.08 deleterious(0.02) probably_damaging(1) TCGA-KK-A8ID-01 16 58301442 58301468 AAAAGAGCTACTTGAAAAAATTGAAAA - CCDC113 In_Frame_Del p.K282_K290del 0.31 TCGA-KK-A8ID-01 16 81685832 81685832 G C CMIP Missense_Mutation p.V168L 0.29 tolerated(0.68) benign(0.057) TCGA-KK-A8ID-01 16 81685842 81685842 A C CMIP Missense_Mutation p.N171T 0.30 tolerated(0.29) possibly_damaging(0.575) TCGA-KK-A8ID-01 17 37650848 37650848 G A CDK12 Missense_Mutation p.E774K 0.34 probably_damaging(0.998) TCGA-KK-A8ID-01 17 37676253 37676254 TA - CDK12 Frame_Shift_Del p.L1003Rfs*3 0.31 TCGA-KK-A8ID-01 17 45234690 45234706 CAGTTGCTAAAGTTCTG - CDC27 Frame_Shift_Del p.Q174Sfs*11 0.16 TCGA-KK-A8ID-01 18 42532187 42532187 T G SETBP1 Missense_Mutation p.I961S 0.42 deleterious(0) possibly_damaging(0.48) TCGA-KK-A8ID-01 19 12790632 12790632 C A DHPS Silent p.R159R 0.24 TCGA-KK-A8ID-01 19 2410386 2410386 C A TMPRSS9 Silent p.S382S 0.50 TCGA-KK-A8ID-01 19 42381341 42381354 CTGCAACTCAAACT - CD79A 5'UTR 0.30 TCGA-KK-A8ID-01 19 42738720 42738720 G A GSK3A Silent p.L259L 0.36 TCGA-KK-A8ID-01 19 6458224 6458224 C G SLC25A23 Missense_Mutation p.D90H 0.17 deleterious(0) probably_damaging(1) TCGA-KK-A8ID-01 19 804112 804112 G T PTBP1 Silent p.R64R 0.14 TCGA-KK-A8ID-01 1 100598732 100598732 C A TRMT13 Missense_Mutation p.T3N 0.07 deleterious_low_confidence(0.02) benign(0.006) TCGA-KK-A8ID-01 1 10364567 10364567 G AC KIF1B Intron 0.30 TCGA-KK-A8ID-01 1 152648490 152648490 G A LCE2C 5'UTR 0.39 TCGA-KK-A8ID-01 1 155887434 155887434 A T KIAA0907 Silent p.A432A 0.58 TCGA-KK-A8ID-01 1 21548284 21548284 G C ECE1 Missense_Mutation p.L698V 0.04 tolerated(0.69) probably_damaging(0.997) TCGA-KK-A8ID-01 1 223285928 223285928 C T TLR5 Missense_Mutation p.R149H 0.31 tolerated(0.61) benign(0.005) TCGA-KK-A8ID-01 1 240256589 240256591 GCC - FMN2 In_Frame_Del p.A395del 0.46 TCGA-KK-A8ID-01 1 24417440 24417440 C T MYOM3 Missense_Mutation p.G427R 0.42 tolerated(0.46) benign(0.013) TCGA-KK-A8ID-01 1 27226496 27226496 A T GPATCH3 Silent p.P146P 0.38 TCGA-KK-A8ID-01 1 32669948 32669948 G A CCDC28B Missense_Mutation p.A165T 0.18 tolerated(0.08) benign(0.285) TCGA-KK-A8ID-01 1 46120919 46120919 G A GPBP1L1 Missense_Mutation p.R45C 0.45 deleterious(0) possibly_damaging(0.785) TCGA-KK-A8ID-01 1 7724777 7724777 A T CAMTA1 Missense_Mutation p.N724Y 0.21 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-KK-A8ID-01 20 47990861 47990861 G A KCNB1 Silent p.I412I 0.60 TCGA-KK-A8ID-01 22 39477231 39477231 C T APOBEC3G Silent p.D155D 0.06 TCGA-KK-A8ID-01 22 50875995 50875995 A G PPP6R2 Missense_Mutation p.N556D 0.36 deleterious(0) probably_damaging(0.925) TCGA-KK-A8ID-01 2 160964242 160964242 C T ITGB6 Missense_Mutation p.R739H 0.07 deleterious(0) probably_damaging(0.99) TCGA-KK-A8ID-01 2 179455521 179455521 G A TTN Nonsense_Mutation p.R20311* 0.54 TCGA-KK-A8ID-01 2 211504743 211504743 C G CPS1 Missense_Mutation p.D979E 0.37 tolerated(0.41) benign(0.013) TCGA-KK-A8ID-01 2 223085952 223085952 G T PAX3 Missense_Mutation p.S316Y 0.29 deleterious(0.01) benign(0.413) TCGA-KK-A8ID-01 2 231973478 231973478 C T HTR2B Missense_Mutation p.R400Q 0.33 tolerated(0.62) benign(0.001) TCGA-KK-A8ID-01 2 241689898 241689898 G A KIF1A Silent p.S975S 0.22 TCGA-KK-A8ID-01 3 10264445 10264445 C T IRAK2 Missense_Mutation p.A380V 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-KK-A8ID-01 3 195595228 195595229 - G TNK2 Frame_Shift_Ins p.P711Afs*4 0.44 TCGA-KK-A8ID-01 3 195925262 195925262 C T ZDHHC19 Silent p.P278P 0.19 TCGA-KK-A8ID-01 3 38924808 38924808 C A SCN11A Silent p.L1045L 0.36 TCGA-KK-A8ID-01 4 156863585 156863585 A C CTSO Missense_Mutation p.S90A 0.36 tolerated(0.25) benign(0.003) TCGA-KK-A8ID-01 4 174253253 174253253 T C HMGB2 Missense_Mutation p.E203G 0.05 deleterious_low_confidence(0.03) unknown(0) TCGA-KK-A8ID-01 4 46067500 46067500 T C GABRG1 Silent p.G141G 0.34 TCGA-KK-A8ID-01 4 47405709 47405709 T G GABRB1 Silent p.S272S 0.34 TCGA-KK-A8ID-01 5 80809507 80809507 T G SSBP2 Silent p.L104L 0.48 TCGA-KK-A8ID-01 5 89986832 89986832 G A GPR98 Missense_Mutation p.A2309T 0.16 possibly_damaging(0.811) TCGA-KK-A8ID-01 5 94046594 94046594 G T MCTP1 Missense_Mutation p.A920D 0.34 deleterious(0) probably_damaging(1) TCGA-KK-A8ID-01 6 30124743 30124743 G A TRIM10 Silent p.L290L 0.50 TCGA-KK-A8ID-01 6 32188854 32188854 G A NOTCH4 Missense_Mutation p.R234W 0.07 tolerated(0.06) benign(0.015) TCGA-KK-A8ID-01 6 35438405 35438405 G A RPL10A Missense_Mutation p.E178K 0.41 tolerated(0.06) benign(0.107) TCGA-KK-A8ID-01 6 39581087 39581087 T C KIF6 Missense_Mutation p.T173A 0.30 tolerated(0.27) benign(0.034) TCGA-KK-A8ID-01 6 79577197 79577197 G A IRAK1BP1 5'UTR 0.06 TCGA-KK-A8ID-01 6 88375537 88375537 G A ORC3 Missense_Mutation p.M673I 0.06 tolerated(0.37) benign(0.001) TCGA-KK-A8ID-01 7 139416759 139416759 G A HIPK2 Silent p.F25F 0.33 TCGA-KK-A8ID-01 8 118847769 118847781 GCATCACAGGGAC - EXT1 Frame_Shift_Del p.V356Sfs*12 0.31 TCGA-KK-A8ID-01 8 21832266 21832266 C A XPO7 Missense_Mutation p.S193Y 0.38 deleterious(0) probably_damaging(0.91) TCGA-KK-A8ID-01 8 51314884 51314884 G A SNTG1 Missense_Mutation p.G48S 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-KK-A8ID-01 8 68255450 68255453 CTTC - ARFGEF1 Frame_Shift_Del p.E24* 0.49 TCGA-KK-A8ID-01 9 134165681 134165681 C T PPAPDC3 Silent p.C99C 0.43 TCGA-KK-A8ID-01 9 71395528 71395528 C G FAM122A Missense_Mutation p.R150G 0.54 deleterious(0) probably_damaging(0.995) TCGA-KK-A8ID-01 X 109963154 109963154 C T CHRDL1 Silent p.E150E 0.78 TCGA-KK-A8ID-01 X 34148192 34148192 C A FAM47A Missense_Mutation p.G735V 0.12 deleterious(0) probably_damaging(0.998) TCGA-KK-A8IF-01 10 125805805 125805805 G A CHST15 5'UTR 0.46 TCGA-KK-A8IF-01 10 72511348 72511348 A T ADAMTS14 Missense_Mutation p.T851S 0.39 tolerated(0.53) benign(0.019) TCGA-KK-A8IF-01 11 103124075 103124075 C G DYNC2H1 Silent p.L3375L 0.88 TCGA-KK-A8IF-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.60 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IF-01 11 124189196 124189196 C T OR8D2 Missense_Mutation p.A300T 0.43 deleterious(0.03) benign(0.019) TCGA-KK-A8IF-01 11 124489288 124489288 G A PANX3 Silent p.R212R 0.51 TCGA-KK-A8IF-01 11 124489568 124489568 G A PANX3 Missense_Mutation p.E306K 0.40 deleterious(0) probably_damaging(0.986) TCGA-KK-A8IF-01 11 124489570 124489570 G A PANX3 Silent p.E306E 0.40 TCGA-KK-A8IF-01 11 124489586 124489586 G C PANX3 Missense_Mutation p.D312H 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-KK-A8IF-01 11 124489636 124489636 G C PANX3 Silent p.V328V 0.45 TCGA-KK-A8IF-01 11 59620781 59620781 C T TCN1 Missense_Mutation p.E379K 0.39 tolerated(0.08) benign(0.063) TCGA-KK-A8IF-01 11 6643327 6643327 G A DCHS1 Missense_Mutation p.P3194S 0.10 deleterious(0.03) benign(0.029) TCGA-KK-A8IF-01 12 53917100 53917100 G A ATF7 Silent p.C398C 0.07 TCGA-KK-A8IF-01 13 33628320 33628320 T A KL Silent p.I412I 0.09 TCGA-KK-A8IF-01 13 46701744 46701744 T C LCP1 Silent p.K622K 0.08 TCGA-KK-A8IF-01 14 104573164 104573164 T C ASPG Missense_Mutation p.V401A 0.56 tolerated(0.4) benign(0.001) TCGA-KK-A8IF-01 14 38061312 38061312 T C FOXA1 Missense_Mutation p.D226G 0.46 deleterious(0) probably_damaging(0.998) TCGA-KK-A8IF-01 14 65209152 65209152 G A PLEKHG3 Missense_Mutation p.G917R 0.38 tolerated(0.35) benign(0.02) TCGA-KK-A8IF-01 15 66629250 66629250 C T TIPIN 3'UTR 0.57 TCGA-KK-A8IF-01 16 81735396 81735396 G A CMIP Silent p.L629L 0.06 TCGA-KK-A8IF-01 17 35605581 35605581 G A ACACA Missense_Mutation p.A700V 0.33 deleterious(0.05) possibly_damaging(0.525) TCGA-KK-A8IF-01 17 47696433 47696433 G C SPOP Missense_Mutation p.D130E 0.39 tolerated(0.15) probably_damaging(1) TCGA-KK-A8IF-01 18 2770030 2770030 G T SMCHD1 Missense_Mutation p.K1630N 0.32 deleterious(0) benign(0.432) TCGA-KK-A8IF-01 19 8203374 8203374 G A FBN3 Missense_Mutation p.R314C 0.39 deleterious(0) possibly_damaging(0.846) TCGA-KK-A8IF-01 1 1139318 1139318 G A TNFRSF18 Nonsense_Mutation p.R141* 0.46 TCGA-KK-A8IF-01 1 185959539 185959539 C A HMCN1 Missense_Mutation p.A1114D 0.39 probably_damaging(0.999) TCGA-KK-A8IF-01 1 75038381 75038381 G T C1orf173 Silent p.R1005R 0.38 TCGA-KK-A8IF-01 1 75229587 75229589 CTG - TYW3 In_Frame_Del p.C191del 0.38 TCGA-KK-A8IF-01 20 55208584 55208594 TGAATGCTTAA - TFAP2C Frame_Shift_Del p.E255Cfs*51 0.22 TCGA-KK-A8IF-01 20 61870925 61870925 G A BIRC7 Missense_Mutation p.V289I 0.66 tolerated(1) benign(0.01) TCGA-KK-A8IF-01 22 19754359 19754359 C G TBX1 Missense_Mutation p.P486R 0.29 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-KK-A8IF-01 22 43625113 43625113 C T SCUBE1 Missense_Mutation p.R350H 0.26 tolerated(0.06) benign(0.001) TCGA-KK-A8IF-01 3 193032862 193032862 G A ATP13A5 Missense_Mutation p.T686I 0.04 tolerated(0.4) benign(0.02) TCGA-KK-A8IF-01 6 13365848 13365848 G A GFOD1 Silent p.D100D 0.40 TCGA-KK-A8IF-01 7 128481581 128481581 C G FLNC Missense_Mutation p.A694G 0.61 deleterious(0.01) possibly_damaging(0.491) TCGA-KK-A8IF-01 7 151878020 151878020 G A KMT2C Nonsense_Mutation p.Q2309* 0.74 TCGA-KK-A8IF-01 9 101608342 101608342 T C GALNT12 Silent p.D514D 0.35 TCGA-KK-A8IF-01 X 54259322 54259322 C T WNK3 Missense_Mutation p.R1587H 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-KK-A8IG-01 10 123844789 123844789 G T TACC2 Missense_Mutation p.S925I 0.34 possibly_damaging(0.804) TCGA-KK-A8IG-01 10 97917472 97917472 C G ZNF518A RNA 0.33 TCGA-KK-A8IG-01 11 105929646 105929646 T C KBTBD3 Missense_Mutation p.D60G 0.30 tolerated(1) benign(0.004) TCGA-KK-A8IG-01 11 108124735 108124736 CA - ATM Frame_Shift_Del p.S698* 0.13 TCGA-KK-A8IG-01 11 119291595 119291595 G A THY1 Silent p.I7I 0.10 TCGA-KK-A8IG-01 11 128993409 128993409 C T ARHGAP32 Missense_Mutation p.G112S 0.32 tolerated(0.05) probably_damaging(0.992) TCGA-KK-A8IG-01 12 85677394 85677394 G A ALX1 Missense_Mutation p.E91K 0.40 tolerated(0.12) benign(0.164) TCGA-KK-A8IG-01 14 104573550 104573550 G A ASPG Missense_Mutation p.G434D 0.06 deleterious(0.01) probably_damaging(0.99) TCGA-KK-A8IG-01 14 20296284 20296284 G T OR4N2 Missense_Mutation p.R226L 0.06 deleterious(0) benign(0.255) TCGA-KK-A8IG-01 14 32562152 32562152 C A ARHGAP5 Missense_Mutation p.H759Q 0.19 tolerated(0.58) benign(0.034) TCGA-KK-A8IG-01 14 38679570 38679570 C T SSTR1 Missense_Mutation p.L326F 0.34 deleterious(0.01) probably_damaging(0.969) TCGA-KK-A8IG-01 15 83350314 83350314 G T AP3B2 Missense_Mutation p.R127S 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-KK-A8IG-01 15 85189499 85189499 A G WDR73 Silent p.L145L 0.15 TCGA-KK-A8IG-01 15 89392695 89392695 G C ACAN Missense_Mutation p.E587Q 0.22 deleterious(0.01) unknown(0) TCGA-KK-A8IG-01 17 72926516 72926516 G A OTOP2 Nonsense_Mutation p.W262* 0.49 TCGA-KK-A8IG-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.43 deleterious(0) probably_damaging(1) TCGA-KK-A8IG-01 19 38023375 38023375 G A ZNF793 Missense_Mutation p.V45I 0.34 tolerated(0.48) benign(0.07) TCGA-KK-A8IG-01 19 39691043 39691043 G A NCCRP1 Silent p.A202A 0.06 TCGA-KK-A8IG-01 19 9089955 9089955 G A MUC16 Silent p.S620S 0.07 TCGA-KK-A8IG-01 1 114438385 114438385 C T AP4B1 Missense_Mutation p.A596T 0.05 tolerated(0.62) benign(0) TCGA-KK-A8IG-01 1 16071021 16071021 C T TMEM82 Missense_Mutation p.R235W 0.19 deleterious(0) probably_damaging(0.988) TCGA-KK-A8IG-01 1 201356120 201356120 G A LAD1 Silent p.S123S 0.06 TCGA-KK-A8IG-01 1 23219448 23219448 C T EPHB2 Silent p.A500A 0.35 TCGA-KK-A8IG-01 1 86487932 86487932 T G COL24A1 Silent p.S749S 0.19 TCGA-KK-A8IG-01 20 16030579 16030579 C T MACROD2 3'UTR 0.27 TCGA-KK-A8IG-01 20 39725936 39725936 T C TOP1 Silent p.T269T 0.32 TCGA-KK-A8IG-01 2 25013322 25013322 T G PTRHD1 Missense_Mutation p.E127D 0.33 tolerated(0.56) benign(0.037) TCGA-KK-A8IG-01 2 27907927 27907927 A G SLC4A1AP Silent p.E633E 0.05 TCGA-KK-A8IG-01 3 122545901 122545901 T C DIRC2 Missense_Mutation p.V231A 0.25 deleterious(0.02) possibly_damaging(0.467) TCGA-KK-A8IG-01 3 122545904 122545904 T C DIRC2 Missense_Mutation p.L232S 0.24 deleterious(0) probably_damaging(0.913) TCGA-KK-A8IG-01 3 195391031 195391031 C T SDHAP2 RNA 0.05 TCGA-KK-A8IG-01 3 39436020 39436020 C T SLC25A38 Missense_Mutation p.P249S 0.33 deleterious(0.05) benign(0.262) TCGA-KK-A8IG-01 4 119609163 119609163 G T METTL14 Missense_Mutation p.C51F 0.41 tolerated_low_confidence(0.71) benign(0.276) TCGA-KK-A8IG-01 4 129782991 129782991 A T JADE1 Missense_Mutation p.R372W 0.05 deleterious(0.03) benign(0.015) TCGA-KK-A8IG-01 4 52860765 52860765 G C LRRC66 Nonsense_Mutation p.S808* 0.11 TCGA-KK-A8IG-01 5 66479763 66479763 A G CD180 Missense_Mutation p.L303S 0.31 deleterious(0) probably_damaging(1) TCGA-KK-A8IG-01 6 83850061 83850061 C A DOPEY1 Nonsense_Mutation p.S1785* 0.07 TCGA-KK-A8IG-01 6 9908826 9908826 C T OFCC1 Missense_Mutation p.G90S 0.05 tolerated(1) benign(0.009) TCGA-KK-A8IG-01 7 15651949 15651949 T C MEOX2 3'UTR 0.11 TCGA-KK-A8IG-01 7 45726267 45726267 G A ADCY1 Missense_Mutation p.A817T 0.09 tolerated(0.41) benign(0.002) TCGA-KK-A8IG-01 7 66413640 66413640 C T TMEM248 Silent p.C185C 0.07 TCGA-KK-A8IG-01 8 113240989 113240989 G T CSMD3 Missense_Mutation p.Q3654K 0.06 deleterious(0.01) benign(0.366) TCGA-KK-A8IG-01 8 145773234 145773234 G A ARHGAP39 Silent p.A412A 0.25 TCGA-KK-A8IG-01 9 140444626 140444626 G C PNPLA7 Missense_Mutation p.S8R 0.34 tolerated_low_confidence(0.64) benign(0.176) TCGA-KK-A8IG-01 X 2407293 2407293 G A ZBED1 Missense_Mutation p.R490W 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-KK-A8IH-01 10 75029417 75029417 G C TTC18 Missense_Mutation p.N1064K 0.11 deleterious(0) benign(0.359) TCGA-KK-A8IH-01 11 130775905 130775905 C T SNX19 Missense_Mutation p.D796N 0.16 tolerated(0.22) benign(0.187) TCGA-KK-A8IH-01 12 120214536 120214536 A C CIT Silent p.S592S 0.08 TCGA-KK-A8IH-01 12 14766078 14766078 G A GUCY2C Silent p.T1065T 0.39 TCGA-KK-A8IH-01 15 28202759 28202759 C T OCA2 Missense_Mutation p.A587T 0.52 tolerated(0.5) possibly_damaging(0.679) TCGA-KK-A8IH-01 16 55866955 55866955 C A CES1 Missense_Mutation p.A5S 0.31 tolerated(0.25) benign(0.019) TCGA-KK-A8IH-01 16 58752108 58752108 C T GOT2 Missense_Mutation p.V232M 0.14 deleterious(0.01) benign(0.104) TCGA-KK-A8IH-01 16 84256130 84256130 G A KCNG4 Missense_Mutation p.T418M 0.09 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IH-01 16 87451282 87451282 C T ZCCHC14 Silent p.P252P 0.15 TCGA-KK-A8IH-01 17 34136533 34136533 T G TAF15 5'UTR 0.53 TCGA-KK-A8IH-01 17 57140009 57140009 G C TRIM37 Missense_Mutation p.S287R 0.13 deleterious(0.02) possibly_damaging(0.771) TCGA-KK-A8IH-01 17 76212836 76212836 G T BIRC5 Missense_Mutation p.D128Y 0.31 deleterious(0) possibly_damaging(0.859) TCGA-KK-A8IH-01 18 9954142 9954143 TC - VAPA Frame_Shift_Del p.P274Ffs*23 0.09 TCGA-KK-A8IH-01 1 100380996 100380997 - A AGL Frame_Shift_Ins p.L1408Ifs*14 0.16 TCGA-KK-A8IH-01 1 215408426 215408426 C A KCNK2 Missense_Mutation p.L407M 0.13 tolerated_low_confidence(0.39) benign(0.017) TCGA-KK-A8IH-01 1 24130988 24130988 C T HMGCL Missense_Mutation p.V260M 0.24 deleterious(0.03) benign(0.425) TCGA-KK-A8IH-01 20 5965634 5965639 AGAAAG - MCM8 In_Frame_Del p.E648_R649del 0.24 TCGA-KK-A8IH-01 2 158395160 158395160 C A ACVR1C Silent p.S427S 0.13 TCGA-KK-A8IH-01 2 160285752 160285754 TCT - BAZ2B In_Frame_Del p.R738del 0.17 TCGA-KK-A8IH-01 2 44599960 44599960 G - CAMKMT Frame_Shift_Del p.E82Kfs*22 0.39 TCGA-KK-A8IH-01 3 138376590 138376590 A T PIK3CB Missense_Mutation p.Y962N 0.10 tolerated(0.48) possibly_damaging(0.833) TCGA-KK-A8IH-01 4 164534558 164534558 G C MARCH1 Intron 0.32 TCGA-KK-A8IH-01 4 89668954 89668954 T C FAM13A Missense_Mutation p.Q737R 0.19 tolerated(0.1) probably_damaging(0.999) TCGA-KK-A8IH-01 6 39159466 39159466 C T KCNK5 Missense_Mutation p.G234R 0.21 deleterious(0) probably_damaging(1) TCGA-KK-A8IH-01 7 82545907 82545907 G A PCLO Nonsense_Mutation p.R3799* 0.42 TCGA-KK-A8IH-01 8 17188685 17188685 C T MTMR7 Missense_Mutation p.R280K 0.13 deleterious(0) probably_damaging(0.958) TCGA-KK-A8IH-01 X 1499970 1499970 C T IL3RA Silent p.I345I 0.36 TCGA-KK-A8IH-01 X 151092403 151092403 C T MAGEA4 Silent p.S89S 0.11 TCGA-KK-A8IH-01 X 24007025 24007025 A G KLHL15 Silent p.R276R 0.06 TCGA-KK-A8IH-01 Y 2655665 2655665 C T SRY 5'UTR 0.30 TCGA-KK-A8II-01 10 127677139 127677139 G C FANK1 Missense_Mutation p.V71L 0.05 tolerated(0.31) benign(0.008) TCGA-KK-A8II-01 11 48347461 48347461 G A OR4C3 Missense_Mutation p.M323I 0.37 tolerated(0.45) benign(0.002) TCGA-KK-A8II-01 11 58920573 58920574 - A FAM111A Frame_Shift_Ins p.Q481Afs*3 0.31 TCGA-KK-A8II-01 11 9500066 9500066 G A ZNF143 Missense_Mutation p.G168D 0.44 tolerated(1) benign(0.005) TCGA-KK-A8II-01 12 111085698 111085698 C T TCTN1 Intron 0.43 TCGA-KK-A8II-01 12 32903729 32903729 G A YARS2 Missense_Mutation p.R343W 0.48 tolerated(0.14) benign(0.079) TCGA-KK-A8II-01 13 31531142 31531142 A T TEX26 Nonsense_Mutation p.R149* 0.25 TCGA-KK-A8II-01 14 77948909 77948909 G A ISM2 Silent p.P243P 0.42 TCGA-KK-A8II-01 15 53081526 53081526 C T ONECUT1 Missense_Mutation p.G186S 0.45 tolerated(0.07) probably_damaging(0.969) TCGA-KK-A8II-01 15 54307601 54307601 G A UNC13C Missense_Mutation p.R834Q 0.50 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-KK-A8II-01 15 78526789 78526789 G A ACSBG1 Silent p.L19L 0.43 TCGA-KK-A8II-01 16 1997042 1997042 C T RPL3L Missense_Mutation p.R249H 0.43 deleterious(0.04) benign(0.103) TCGA-KK-A8II-01 17 7559196 7559196 C T ATP1B2 Missense_Mutation p.R286C 0.75 deleterious(0.01) probably_damaging(0.912) TCGA-KK-A8II-01 18 12955541 12955541 G A SEH1L Missense_Mutation p.R81Q 0.05 deleterious(0.01) possibly_damaging(0.761) TCGA-KK-A8II-01 1 173721044 173721044 C A KLHL20 Missense_Mutation p.R247S 0.33 tolerated(0.07) probably_damaging(1) TCGA-KK-A8II-01 1 208062058 208062058 C T CD34 Missense_Mutation p.R314H 0.45 deleterious(0) probably_damaging(0.997) TCGA-KK-A8II-01 1 229431652 229431652 C T RAB4A Silent p.I95I 0.42 TCGA-KK-A8II-01 1 47279929 47279929 G A CYP4B1 Missense_Mutation p.R275Q 0.38 tolerated(0.47) benign(0.005) TCGA-KK-A8II-01 1 9784114 9784114 G A PIK3CD Silent p.R894R 0.05 TCGA-KK-A8II-01 20 39990606 39990606 C T EMILIN3 Missense_Mutation p.A535T 0.10 tolerated(1) benign(0.003) TCGA-KK-A8II-01 20 42907943 42907943 C G GDAP1L1 3'UTR 0.37 TCGA-KK-A8II-01 21 35190641 35190641 A C ITSN1 Missense_Mutation p.N933T 0.09 tolerated(0.14) possibly_damaging(0.842) TCGA-KK-A8II-01 2 10140838 10140838 G T GRHL1 3'UTR 0.35 TCGA-KK-A8II-01 2 39893142 39893142 C T TMEM178A Missense_Mutation p.L10F 0.50 tolerated(0.05) benign(0.052) TCGA-KK-A8II-01 2 46607543 46607543 G - EPAS1 Frame_Shift_Del p.A578Pfs*118 0.19 TCGA-KK-A8II-01 3 100447586 100447586 G C TFG Missense_Mutation p.S100T 0.54 tolerated(0.27) benign(0.018) TCGA-KK-A8II-01 3 119134361 119134361 C T ARHGAP31 Silent p.C1195C 0.07 TCGA-KK-A8II-01 3 182756832 182756832 G T MCCC1 Nonsense_Mutation p.Y453* 0.47 TCGA-KK-A8II-01 3 37367122 37367122 A G GOLGA4 Missense_Mutation p.R1271G 0.37 possibly_damaging(0.894) TCGA-KK-A8II-01 4 68692994 68692994 C T TMPRSS11D Missense_Mutation p.A313T 0.35 deleterious(0) benign(0.225) TCGA-KK-A8II-01 5 140175878 140175878 C T PCDHA2 Silent p.I443I 0.49 TCGA-KK-A8II-01 5 26902661 26902661 C A CDH9 Missense_Mutation p.D393Y 0.06 tolerated(0.72) possibly_damaging(0.771) TCGA-KK-A8II-01 5 31318075 31318075 C T CDH6 Intron 0.49 TCGA-KK-A8II-01 6 111888871 111888871 G A TRAF3IP2 Nonsense_Mutation p.R439* 0.52 TCGA-KK-A8II-01 6 66115238 66115238 T G EYS Silent p.A295A 0.46 TCGA-KK-A8II-01 7 151877201 151877201 A C KMT2C Nonsense_Mutation p.L2387* 0.44 TCGA-KK-A8II-01 7 43484655 43484655 G A HECW1 Silent p.A628A 0.57 TCGA-KK-A8II-01 7 44611159 44611159 T C DDX56 Silent p.L274L 0.32 TCGA-KK-A8II-01 7 72410437 72410437 C T POM121 Missense_Mutation p.P233L 0.30 deleterious(0.04) benign(0.056) TCGA-KK-A8II-01 8 143784453 143784453 G A LY6K Intron 0.21 TCGA-KK-A8II-01 9 111617719 111617719 C T ACTL7B Silent p.A164A 0.37 TCGA-KK-A8II-01 9 119903633 119903633 C G ASTN2 Intron 0.50 TCGA-KK-A8II-01 9 15185290 15185290 G C TTC39B Missense_Mutation p.I534M 0.05 tolerated(0.05) possibly_damaging(0.824) TCGA-KK-A8II-01 X 104464700 104464700 G T TEX13A Silent p.R128R 0.12 TCGA-KK-A8II-01 X 120182329 120182329 G A GLUD2 Missense_Mutation p.G264E 0.89 deleterious(0) probably_damaging(0.995) TCGA-KK-A8II-01 X 84526039 84526039 C T ZNF711 Silent p.A497A 0.07 TCGA-KK-A8IJ-01 11 71719830 71719830 A - NUMA1 Frame_Shift_Del p.L1707* 0.15 TCGA-KK-A8IJ-01 11 96117466 96117466 T G CCDC82 Missense_Mutation p.Q149P 0.10 tolerated(0.25) benign(0.212) TCGA-KK-A8IJ-01 12 25274826 25274826 T C CASC1 Missense_Mutation p.N367S 0.14 tolerated(0.31) benign(0.32) TCGA-KK-A8IJ-01 13 25743973 25743973 T C AMER2 Silent p.P595P 0.05 TCGA-KK-A8IJ-01 14 23467792 23467792 G A C14orf93 Silent p.S147S 0.10 TCGA-KK-A8IJ-01 14 89148373 89148373 T C EML5 Silent p.G995G 0.11 TCGA-KK-A8IJ-01 15 33954430 33954430 G A RYR3 Missense_Mutation p.A1567T 0.20 benign(0.386) TCGA-KK-A8IJ-01 15 60741602 60741602 T - NARG2 Frame_Shift_Del p.I522Lfs*9 0.10 TCGA-KK-A8IJ-01 17 62589625 62589625 T G SMURF2 Missense_Mutation p.Q89H 0.16 deleterious(0.05) benign(0.025) TCGA-KK-A8IJ-01 19 11832823 11832823 C A ZNF823 Missense_Mutation p.S509I 0.11 tolerated(0.49) possibly_damaging(0.876) TCGA-KK-A8IJ-01 19 19115404 19115404 C T SUGP2 Silent p.V834V 0.29 TCGA-KK-A8IJ-01 19 52496378 52496378 A - ZNF615 Frame_Shift_Del p.S662Pfs*92 0.09 TCGA-KK-A8IJ-01 19 53302074 53302074 C A ZNF28 3'UTR 0.28 TCGA-KK-A8IJ-01 19 56369968 56369968 T A NLRP4 Silent p.A403A 0.07 TCGA-KK-A8IJ-01 1 145699056 145699056 T G CD160 Missense_Mutation p.Q145H 0.18 tolerated(0.13) benign(0.004) TCGA-KK-A8IJ-01 1 186056778 186056778 G A HMCN1 Splice_Site p.X3121_splice 0.26 TCGA-KK-A8IJ-01 1 229773318 229773318 T A URB2 Silent p.L986L 0.10 TCGA-KK-A8IJ-01 1 34006159 34006159 A C CSMD2 Missense_Mutation p.N3055K 0.21 deleterious(0.01) possibly_damaging(0.61) TCGA-KK-A8IJ-01 1 45295346 45295346 A T PTCH2 Silent p.I341I 0.09 TCGA-KK-A8IJ-01 1 65278473 65278473 G A RAVER2 Missense_Mutation p.R565Q 0.27 deleterious(0) probably_damaging(0.969) TCGA-KK-A8IJ-01 20 3145297 3145297 T G LZTS3 Missense_Mutation p.K609Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IJ-01 22 37485725 37485725 G A TMPRSS6 Silent p.P252P 0.23 TCGA-KK-A8IJ-01 2 196852857 196852857 T A DNAH7 Missense_Mutation p.S484C 0.05 tolerated(0.18) benign(0.013) TCGA-KK-A8IJ-01 3 164907134 164907134 G A SLITRK3 Silent p.I495I 0.12 TCGA-KK-A8IJ-01 4 100544108 100544108 C T MTTP 3'UTR 0.29 TCGA-KK-A8IJ-01 4 102981540 102981540 T G BANK1 Missense_Mutation p.I714M 0.18 tolerated(0.07) benign(0.256) TCGA-KK-A8IJ-01 4 123249427 123249427 T G KIAA1109 Missense_Mutation p.L3722V 0.05 benign(0.046) TCGA-KK-A8IJ-01 4 62813885 62813885 A T LPHN3 Missense_Mutation p.Y831F 0.07 tolerated(0.2) benign(0.02) TCGA-KK-A8IJ-01 5 130980422 130980422 C T FNIP1 Missense_Mutation p.V1153I 0.17 tolerated(0.86) probably_damaging(0.994) TCGA-KK-A8IJ-01 5 140167805 140167805 C T PCDHA1 Missense_Mutation p.R644C 0.18 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-KK-A8IJ-01 5 74647339 74647339 C T HMGCR Missense_Mutation p.S427L 0.10 tolerated(0.32) benign(0) TCGA-KK-A8IJ-01 6 41889339 41889339 G A BYSL Silent p.Q13Q 0.20 TCGA-KK-A8IJ-01 6 43466774 43466774 G C TJAP1 Missense_Mutation p.R12P 0.14 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IJ-01 7 103004675 103004675 C T PSMC2 Missense_Mutation p.A226V 0.14 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IJ-01 7 123152133 123152133 C A IQUB Missense_Mutation p.V88F 0.06 tolerated_low_confidence(0.43) benign(0.002) TCGA-KK-A8IJ-01 9 74319545 74319545 G A TMEM2 Missense_Mutation p.R1054W 0.37 deleterious(0) benign(0.339) TCGA-KK-A8IK-01 10 37447322 37447324 TCT - ANKRD30A In_Frame_Del p.S545del 0.28 TCGA-KK-A8IK-01 10 88988143 88988143 G A NUTM2A Missense_Mutation p.G169E 0.22 tolerated(0.37) possibly_damaging(0.576) TCGA-KK-A8IK-01 11 111404529 111404529 C A C11orf88 Nonsense_Mutation p.S160* 0.92 TCGA-KK-A8IK-01 11 119169173 119169173 C G CBL Missense_Mutation p.A786G 0.08 deleterious_low_confidence(0.02) benign(0.352) TCGA-KK-A8IK-01 11 44146380 44146380 A C EXT2 Missense_Mutation p.H295P 0.88 tolerated(0.15) benign(0.29) TCGA-KK-A8IK-01 11 69625454 69625454 G A FGF3 Silent p.A113A 0.11 TCGA-KK-A8IK-01 12 124163788 124163788 T G TCTN2 Silent p.P172P 0.92 TCGA-KK-A8IK-01 12 53693739 53693739 T C C12orf10 Splice_Site p.X72_splice 0.42 TCGA-KK-A8IK-01 12 6440068 6440068 C T TNFRSF1A Silent p.T192T 0.24 TCGA-KK-A8IK-01 14 20019962 20019962 C T POTEM Missense_Mutation p.D87N 0.28 deleterious_low_confidence(0.04) benign(0.028) TCGA-KK-A8IK-01 14 38061200 38061202 CTG - FOXA1 In_Frame_Del p.Q263del 0.62 TCGA-KK-A8IK-01 14 77950790 77950790 G A ISM2 Missense_Mutation p.A168V 0.43 tolerated(0.1) unknown(0) TCGA-KK-A8IK-01 15 91346839 91346839 G A BLM Silent p.L1149L 0.22 TCGA-KK-A8IK-01 17 47696426 47696426 A C SPOP Missense_Mutation p.F133V 0.37 deleterious(0.03) probably_damaging(0.998) TCGA-KK-A8IK-01 19 10226166 10226166 G A EIF3G Silent p.V312V 0.32 TCGA-KK-A8IK-01 19 13323529 13323529 C T CACNA1A Missense_Mutation p.R1989H 0.67 possibly_damaging(0.715) TCGA-KK-A8IK-01 19 40433869 40433869 G A FCGBP Missense_Mutation p.R134W 0.06 benign(0.006) TCGA-KK-A8IK-01 19 44515050 44515050 A G ZNF230 Missense_Mutation p.K287E 0.46 deleterious(0.03) benign(0.044) TCGA-KK-A8IK-01 1 150444279 150444279 C G RPRD2 Missense_Mutation p.T952S 0.48 tolerated_low_confidence(0.1) benign(0.001) TCGA-KK-A8IK-01 1 203839002 203839002 C G SNRPE Intron 0.32 TCGA-KK-A8IK-01 1 23111211 23111211 C T EPHB2 Silent p.D151D 0.54 TCGA-KK-A8IK-01 1 245862232 245862232 G A KIF26B Missense_Mutation p.R2024H 0.58 deleterious(0) unknown(0) TCGA-KK-A8IK-01 20 44869670 44869670 A C CDH22 Missense_Mutation p.I161S 0.16 deleterious(0) probably_damaging(0.992) TCGA-KK-A8IK-01 20 60775813 60775813 G A MTG2 Missense_Mutation p.E301K 0.38 deleterious(0) probably_damaging(0.974) TCGA-KK-A8IK-01 2 103431323 103431323 C T TMEM182 Silent p.L196L 0.55 TCGA-KK-A8IK-01 3 147128057 147128057 C A ZIC1 Nonsense_Mutation p.S53* 0.25 TCGA-KK-A8IK-01 4 22389479 22389479 A G GPR125 Missense_Mutation p.V1272A 0.38 tolerated(0.63) benign(0.001) TCGA-KK-A8IK-01 4 7802211 7802211 C T AFAP1 Silent p.T408T 0.22 TCGA-KK-A8IK-01 4 786237 786237 T G CPLX1 Missense_Mutation p.Q64P 0.36 deleterious(0) probably_damaging(0.995) TCGA-KK-A8IK-01 5 140562053 140562053 G A PCDHB16 5'UTR 0.32 TCGA-KK-A8IK-01 5 162060 162060 G A PLEKHG4B Splice_Site p.X527_splice 0.07 TCGA-KK-A8IK-01 6 165829699 165829699 A T PDE10A Missense_Mutation p.Y357N 0.41 deleterious(0) probably_damaging(1) TCGA-KK-A8IK-01 6 97616033 97616033 G A MMS22L Silent p.L975L 0.07 TCGA-KK-A8IK-01 7 100488845 100488845 G A ACHE Silent p.R556R 0.08 TCGA-KK-A8IK-01 7 148851149 148851149 T C ZNF398 Missense_Mutation p.V46A 0.62 deleterious(0.03) probably_damaging(0.994) TCGA-KK-A8IK-01 8 128752816 128752816 C G MYC Missense_Mutation p.A326G 0.56 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IK-01 9 96420442 96420442 G C PHF2 Missense_Mutation p.G388A 0.53 tolerated(0.05) unknown(0) TCGA-KK-A8IK-01 X 12939904 12939904 T G TLR8 Silent p.L915L 0.95 TCGA-KK-A8IK-01 X 150791530 150791530 C T PASD1 Silent p.L180L 0.09 TCGA-KK-A8IK-01 X 43591988 43591988 T - MAOA Frame_Shift_Del p.S334Qfs*2 0.50 TCGA-KK-A8IK-01 X 88009169 88009169 G T CPXCR1 Missense_Mutation p.G252C 1.00 tolerated(0.07) probably_damaging(0.991) TCGA-KK-A8IL-01 10 13240783 13240783 A G MCM10 Silent p.S739S 0.29 TCGA-KK-A8IL-01 10 16946102 16946102 C T CUBN Missense_Mutation p.G2642E 0.28 deleterious(0) probably_damaging(1) TCGA-KK-A8IL-01 10 87966202 87966202 C T GRID1 Missense_Mutation p.V147I 0.21 tolerated(0.29) probably_damaging(0.993) TCGA-KK-A8IL-01 10 88702686 88702686 G C MMRN2 Missense_Mutation p.L619V 0.22 tolerated(0.05) benign(0.015) TCGA-KK-A8IL-01 11 130109742 130109742 C T ZBTB44 Silent p.T356T 0.16 TCGA-KK-A8IL-01 11 44092838 44092838 A G ACCS Silent p.K107K 0.04 TCGA-KK-A8IL-01 12 130897244 130897244 A G RIMBP2 Missense_Mutation p.I914T 0.09 deleterious(0) probably_damaging(0.982) TCGA-KK-A8IL-01 12 53242526 53242526 C A KRT78 Silent p.G63G 0.35 TCGA-KK-A8IL-01 13 101944385 101944385 T A NALCN Missense_Mutation p.M335L 0.17 tolerated(0.11) benign(0.147) TCGA-KK-A8IL-01 14 20781932 20781932 T C CCNB1IP1 Missense_Mutation p.Y109C 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-KK-A8IL-01 14 31354882 31354882 C T COCH Intron 0.13 TCGA-KK-A8IL-01 14 70490004 70490004 C T SMOC1 Silent p.N377N 0.16 TCGA-KK-A8IL-01 15 101832175 101832175 C T SNRPA1 Missense_Mutation p.V101M 0.27 tolerated(0.11) benign(0.012) TCGA-KK-A8IL-01 16 15045869 15045869 T C NPIPA1 Missense_Mutation p.I347T 0.09 tolerated_low_confidence(0.73) benign(0) TCGA-KK-A8IL-01 17 1840687 1840687 G A RTN4RL1 Silent p.G143G 0.24 TCGA-KK-A8IL-01 19 49949879 49949879 G A PIH1D1 Missense_Mutation p.H254Y 0.29 tolerated(0.29) benign(0.002) TCGA-KK-A8IL-01 19 55340907 55340907 C T KIR3DL1 Silent p.C364C 0.11 TCGA-KK-A8IL-01 1 158913599 158913599 C T PYHIN1 Missense_Mutation p.T341M 0.21 deleterious(0.02) possibly_damaging(0.743) TCGA-KK-A8IL-01 1 186063456 186063456 C A HMCN1 Silent p.A3415A 0.21 TCGA-KK-A8IL-01 20 16485058 16485058 C T KIF16B Missense_Mutation p.E379K 0.34 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IL-01 20 16485059 16485059 A G KIF16B Silent p.A378A 0.35 TCGA-KK-A8IL-01 20 9365016 9365016 C A PLCB4 Missense_Mutation p.S341Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IL-01 21 47961679 47961679 C T DIP2A Silent p.L683L 0.12 TCGA-KK-A8IL-01 2 110889309 110889309 C T NPHP1 Missense_Mutation p.R586Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IL-01 2 133538654 133538654 C A NCKAP5 Missense_Mutation p.A1674S 0.20 deleterious(0.02) possibly_damaging(0.544) TCGA-KK-A8IL-01 2 133538754 133538754 A G NCKAP5 Silent p.A1640A 0.16 TCGA-KK-A8IL-01 2 219540121 219540121 G A STK36 Missense_Mutation p.R120H 0.06 deleterious(0) probably_damaging(0.998) TCGA-KK-A8IL-01 2 234296823 234296823 G A DGKD Intron 0.10 TCGA-KK-A8IL-01 2 234356982 234356982 G T DGKD Silent p.T525T 0.12 TCGA-KK-A8IL-01 2 242289493 242289493 C T SEPT2 Silent p.R330R 0.17 TCGA-KK-A8IL-01 2 74154094 74154094 C T DGUOK Silent p.A19A 0.06 TCGA-KK-A8IL-01 3 122254932 122254932 A C PARP9 Intron 0.13 TCGA-KK-A8IL-01 3 164907874 164907874 G A SLITRK3 Missense_Mutation p.R249C 0.15 deleterious(0.02) possibly_damaging(0.794) TCGA-KK-A8IL-01 3 19498330 19498330 G T KCNH8 Missense_Mutation p.K632N 0.35 deleterious(0) probably_damaging(1) TCGA-KK-A8IL-01 4 8228813 8228813 G A SH3TC1 Silent p.A464A 0.36 TCGA-KK-A8IL-01 5 148929812 148929812 G A CSNK1A1 Intron 0.14 TCGA-KK-A8IL-01 5 56778416 56778416 C T ACTBL2 Missense_Mutation p.R40Q 0.26 tolerated_low_confidence(0.06) benign(0.408) TCGA-KK-A8IL-01 6 100957213 100957213 A G ASCC3 3'UTR 0.35 TCGA-KK-A8IL-01 6 89793533 89793533 A G PNRC1 Missense_Mutation p.H201R 0.29 tolerated(0.21) possibly_damaging(0.732) TCGA-KK-A8IL-01 7 103234230 103234230 C A RELN Missense_Mutation p.A1271S 0.07 tolerated(0.96) benign(0.003) TCGA-KK-A8IL-01 7 113519341 113519341 A G PPP1R3A Silent p.H602H 0.05 TCGA-KK-A8IL-01 7 150752434 150752434 C T CDK5 Silent p.P170P 0.35 TCGA-KK-A8IL-01 7 151845543 151845555 TTAATGGCGCAAG - KMT2C Frame_Shift_Del p.T4486Kfs*27 0.27 TCGA-KK-A8IL-01 7 53103986 53103986 C T POM121L12 Missense_Mutation p.R208W 0.31 tolerated(0.13) benign(0) TCGA-KK-A8IL-01 7 88963984 88963984 A C ZNF804B Missense_Mutation p.K563T 0.24 tolerated(0.56) benign(0.003) TCGA-KK-A8IL-01 8 10468857 10468857 C T RP1L1 Silent p.A917A 0.14 TCGA-KK-A8IL-01 8 19810847 19810847 T A LPL Missense_Mutation p.N152K 0.32 tolerated(0.27) benign(0.026) TCGA-KK-A8IL-01 8 86386565 86386565 C T CA2 Missense_Mutation p.H122Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-KK-A8IL-01 X 3229355 3229355 G A MXRA5 Missense_Mutation p.R2297C 0.15 deleterious(0) probably_damaging(1) TCGA-KK-A8IM-01 10 106937890 106937890 C T SORCS3 Silent p.D656D 0.20 TCGA-KK-A8IM-01 10 26506848 26506848 G A GAD2 Missense_Mutation p.A72T 0.19 tolerated_low_confidence(0.53) benign(0.001) TCGA-KK-A8IM-01 11 57428325 57428325 G A CLP1 Missense_Mutation p.G232D 0.15 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IM-01 12 6344725 6344725 C G CD9 Silent p.T177T 0.19 TCGA-KK-A8IM-01 13 103468831 103468831 T G BIVM-ERCC5 Missense_Mutation p.Y150D 0.15 tolerated_low_confidence(0.13) benign(0.016) TCGA-KK-A8IM-01 14 68353829 68353829 G A RAD51B Missense_Mutation p.A222T 0.13 tolerated(1) benign(0.004) TCGA-KK-A8IM-01 15 34102839 34102839 C T RYR3 Nonsense_Mutation p.R3396* 0.15 TCGA-KK-A8IM-01 16 1498382 1498382 C T CLCN7 Missense_Mutation p.V663M 0.15 deleterious(0) probably_damaging(0.999) TCGA-KK-A8IM-01 17 56700278 56700278 C T TEX14 Missense_Mutation p.R116Q 0.23 deleterious(0) probably_damaging(1) TCGA-KK-A8IM-01 19 15224479 15224479 G A SYDE1 Missense_Mutation p.R638H 0.20 deleterious(0.04) possibly_damaging(0.548) TCGA-KK-A8IM-01 19 39108574 39108574 C T MAP4K1 5'Flank 0.16 TCGA-KK-A8IM-01 1 158656416 158656416 C T SPTA1 5'UTR 0.30 TCGA-KK-A8IM-01 1 176927523 176927523 C A ASTN1 Missense_Mutation p.C565F 0.17 deleterious(0) probably_damaging(0.998) TCGA-KK-A8IM-01 1 200613480 200613480 C - DDX59 Frame_Shift_Del p.E588Nfs*46 0.13 TCGA-KK-A8IM-01 1 26646849 26646849 C T CD52 3'UTR 0.14 TCGA-KK-A8IM-01 20 47855502 47855502 C A DDX27 Missense_Mutation p.F599L 0.06 deleterious(0.01) possibly_damaging(0.826) TCGA-KK-A8IM-01 21 38997475 38997475 C A KCNJ6 Nonsense_Mutation p.E420* 0.12 TCGA-KK-A8IM-01 2 178080605 178080605 A C HNRNPA3 Missense_Mutation p.K108T 0.12 deleterious(0) probably_damaging(0.978) TCGA-KK-A8IM-01 2 27799861 27799861 A T C2orf16 Missense_Mutation p.Y141F 0.18 tolerated(0.55) benign(0.054) TCGA-KK-A8IM-01 2 54570968 54570968 C T C2orf73 Missense_Mutation p.P116S 0.06 tolerated(0.07) possibly_damaging(0.894) TCGA-KK-A8IM-01 3 186572353 186572353 G A ADIPOQ Missense_Mutation p.G199S 0.35 deleterious(0.02) probably_damaging(1) TCGA-KK-A8IM-01 4 156860533 156860533 C T CTSO Nonsense_Mutation p.W181* 0.10 TCGA-KK-A8IM-01 5 150095125 150095125 A G DCTN4 Splice_Site p.X397_splice 0.14 TCGA-KK-A8IM-01 5 158753717 158753717 T A IL12B Missense_Mutation p.E25V 0.15 deleterious(0.01) benign(0.31) TCGA-KK-A8IM-01 5 94288922 94288922 C - MCTP1 Splice_Site p.X327_splice 0.14 TCGA-KK-A8IM-01 6 69349259 69349259 C - BAI3 Frame_Shift_Del p.Q232Rfs*25 0.12 TCGA-KK-A8IM-01 6 96990865 96990865 G A UFL1 Missense_Mutation p.D459N 0.27 deleterious(0.01) possibly_damaging(0.887) TCGA-KK-A8IM-01 7 19765279 19765279 G A TMEM196 Missense_Mutation p.A106V 0.05 tolerated(0.18) possibly_damaging(0.682) TCGA-KK-A8IM-01 8 56436082 56436082 G A XKR4 Missense_Mutation p.V417I 0.23 tolerated(1) probably_damaging(0.989) TCGA-KK-A8IM-01 9 8317916 8317916 G A PTPRD Silent p.A1899A 0.11 TCGA-KK-A8IM-01 X 129155027 129155027 G C BCORL1 Missense_Mutation p.G1170A 0.20 benign(0.184) TCGA-M7-A71Y-01 12 55820588 55820588 T C OR6C76 Missense_Mutation p.I184T 0.07 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-M7-A71Y-01 12 62979092 62979092 G A MON2 Missense_Mutation p.R1573H 0.11 deleterious(0.04) probably_damaging(0.921) TCGA-M7-A71Y-01 12 66742748 66742748 T G GRIP1 3'UTR 0.11 TCGA-M7-A71Y-01 14 105716611 105716611 C T BTBD6 Missense_Mutation p.R354C 0.21 tolerated(0.1) possibly_damaging(0.584) TCGA-M7-A71Y-01 14 25043007 25043007 C T CTSG Missense_Mutation p.G202R 0.04 deleterious(0.02) probably_damaging(1) TCGA-M7-A71Y-01 14 90459746 90459746 G A TDP1 Missense_Mutation p.R487H 0.07 deleterious(0) probably_damaging(0.994) TCGA-M7-A71Y-01 16 11941663 11941663 C A RSL1D1 Missense_Mutation p.L82F 0.09 deleterious(0.01) probably_damaging(0.972) TCGA-M7-A71Y-01 17 45455257 45455257 A G EFCAB13 Missense_Mutation p.T500A 0.06 tolerated(0.06) benign(0.331) TCGA-M7-A71Y-01 18 29205500 29205500 C A B4GALT6 3'UTR 0.11 TCGA-M7-A71Y-01 19 16614049 16614049 G A C19orf44 Silent p.T311T 0.09 TCGA-M7-A71Y-01 1 103428308 103428308 G A COL11A1 Silent p.T975T 0.14 TCGA-M7-A71Y-01 2 230272041 230272041 T G DNER Missense_Mutation p.K544Q 0.05 tolerated(0.1) possibly_damaging(0.884) TCGA-M7-A71Y-01 2 3744989 3744989 C T ALLC Nonsense_Mutation p.R265* 0.06 TCGA-M7-A71Y-01 3 186954037 186954037 A G MASP1 Missense_Mutation p.L541P 0.07 deleterious(0.01) benign(0.099) TCGA-M7-A71Y-01 3 44762573 44762573 C A ZNF502 Missense_Mutation p.F88L 0.05 tolerated(0.36) benign(0.002) TCGA-M7-A71Y-01 5 13700934 13700934 A C DNAH5 Missense_Mutation p.L4513R 0.13 probably_damaging(0.928) TCGA-M7-A71Y-01 6 86333756 86333756 C A SYNCRIP Silent p.V247V 0.06 TCGA-M7-A71Y-01 7 107790554 107790554 C - NRCAM Frame_Shift_Del p.R1239Qfs*8 0.13 TCGA-M7-A71Y-01 7 44553094 44553094 A C NPC1L1 Silent p.G1344G 0.18 TCGA-M7-A71Y-01 7 82430883 82430883 T C PCLO Silent p.Q4986Q 0.05 TCGA-M7-A71Y-01 8 55533943 55533943 C G RP1 Silent p.P139P 0.07 TCGA-M7-A71Y-01 9 136642579 136642579 G C VAV2 Missense_Mutation p.L633V 0.14 tolerated(0.51) probably_damaging(0.916) TCGA-M7-A71Y-01 9 34993218 34993218 T C DNAJB5 Silent p.G110G 0.16 TCGA-M7-A71Z-01 11 56431734 56431734 C T OR5AR1 Silent p.D191D 0.10 TCGA-M7-A71Z-01 12 125509710 125509710 G A BRI3BP Missense_Mutation p.V164I 0.10 tolerated(0.93) benign(0.003) TCGA-M7-A71Z-01 12 5154617 5154617 G A KCNA5 Missense_Mutation p.G435E 0.29 deleterious(0) probably_damaging(1) TCGA-M7-A71Z-01 12 51868974 51868974 G A SLC4A8 Missense_Mutation p.R719H 0.06 deleterious(0.03) benign(0.018) TCGA-M7-A71Z-01 12 85466829 85466830 - A LRRIQ1 Frame_Shift_Ins p.N949Kfs*5 0.35 TCGA-M7-A71Z-01 13 113798308 113798308 G A F10 Missense_Mutation p.D216N 0.19 tolerated(0.7) benign(0.003) TCGA-M7-A71Z-01 15 54306846 54306846 G A UNC13C Silent p.S582S 0.35 TCGA-M7-A71Z-01 15 63055788 63055788 G T TLN2 Missense_Mutation p.C1663F 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-M7-A71Z-01 15 74703021 74703021 C T SEMA7A Missense_Mutation p.A649T 0.50 tolerated(0.46) benign(0.002) TCGA-M7-A71Z-01 17 36499576 36499576 G A GPR179 Missense_Mutation p.R33C 0.33 deleterious(0) possibly_damaging(0.891) TCGA-M7-A71Z-01 18 2694691 2694691 C T SMCHD1 Missense_Mutation p.A347V 0.56 deleterious(0) benign(0.247) TCGA-M7-A71Z-01 19 50453299 50453299 T C SIGLEC11 Silent p.T675T 0.13 TCGA-M7-A71Z-01 19 7806377 7806377 T A CD209 3'UTR 0.17 TCGA-M7-A71Z-01 1 169439315 169439315 G A SLC19A2 Missense_Mutation p.T306I 0.46 deleterious(0) probably_damaging(0.99) TCGA-M7-A71Z-01 1 197390342 197390342 G T CRB1 Missense_Mutation p.D462Y 0.42 deleterious(0) probably_damaging(0.936) TCGA-M7-A71Z-01 1 237957207 237957207 G A RYR2 Missense_Mutation p.R4608Q 0.47 possibly_damaging(0.836) TCGA-M7-A71Z-01 1 248636905 248636905 A T OR2T3 Missense_Mutation p.K85M 0.17 deleterious(0) probably_damaging(0.95) TCGA-M7-A71Z-01 1 39782157 39782157 C G MACF1 Missense_Mutation p.L1187V 0.20 benign(0.003) TCGA-M7-A71Z-01 1 53990499 53990499 C T GLIS1 Missense_Mutation p.R340H 0.17 deleterious(0) probably_damaging(0.996) TCGA-M7-A71Z-01 20 23016627 23016627 C T SSTR4 Silent p.G169G 0.41 TCGA-M7-A71Z-01 2 113942610 113942610 G T PSD4 Missense_Mutation p.G378V 0.47 tolerated_low_confidence(0.08) benign(0.163) TCGA-M7-A71Z-01 2 122144788 122144788 G A CLASP1 Missense_Mutation p.T1095M 0.69 deleterious(0.03) possibly_damaging(0.816) TCGA-M7-A71Z-01 2 136537785 136537785 T - UBXN4 Frame_Shift_Del p.S407Pfs*22 0.20 TCGA-M7-A71Z-01 2 97779509 97779509 C A ANKRD36 Silent p.T11T 0.05 TCGA-M7-A71Z-01 3 134967255 134967255 G A EPHB1 Missense_Mutation p.R865Q 0.36 deleterious(0) probably_damaging(1) TCGA-M7-A71Z-01 5 140347665 140347665 G A PCDHAC2 Silent p.T438T 0.07 TCGA-M7-A71Z-01 5 145547808 145547808 T G LARS Missense_Mutation p.K105N 0.24 tolerated(0.08) benign(0.37) TCGA-M7-A71Z-01 6 143081568 143081568 C A HIVEP2 Missense_Mutation p.V1953L 0.35 tolerated(0.17) benign(0.029) TCGA-M7-A71Z-01 6 146480607 146480607 G A GRM1 Missense_Mutation p.R275H 0.46 deleterious(0.02) possibly_damaging(0.553) TCGA-M7-A71Z-01 7 24742404 24742404 T C DFNA5 Missense_Mutation p.Q411R 0.12 tolerated(0.07) benign(0.376) TCGA-M7-A71Z-01 7 32109962 32109962 G A PDE1C Intron 0.39 TCGA-M7-A71Z-01 7 43906439 43906439 G A MRPS24 Silent p.A121A 0.05 TCGA-M7-A71Z-01 8 71126310 71126310 G A NCOA2 Silent p.S29S 0.13 TCGA-M7-A71Z-01 X 129149433 129149433 C T BCORL1 Silent p.F895F 0.19 TCGA-M7-A720-01 10 99376044 99376044 C T MORN4 Silent p.K139K 0.11 TCGA-M7-A720-01 11 117090340 117090340 G A PCSK7 Silent p.D430D 0.07 TCGA-M7-A720-01 11 61563274 61563274 C T FEN1 Silent p.L147L 0.07 TCGA-M7-A720-01 11 61563280 61563280 C A FEN1 Silent p.G149G 0.08 TCGA-M7-A720-01 15 43891436 43891436 C T CKMT1B Missense_Mutation p.R407C 0.04 deleterious(0.01) possibly_damaging(0.448) TCGA-M7-A720-01 17 8110638 8110638 T G AURKB Missense_Mutation p.K85T 0.08 deleterious(0.02) probably_damaging(0.988) TCGA-M7-A720-01 19 6743220 6743221 - G TRIP10 Frame_Shift_Ins p.R122Afs*11 0.10 TCGA-M7-A720-01 22 36055369 36055369 C T APOL6 Missense_Mutation p.S253L 0.06 tolerated(1) benign(0.048) TCGA-M7-A720-01 3 111918172 111918172 T C SLC9C1 Missense_Mutation p.N840S 0.08 tolerated(0.23) benign(0.004) TCGA-M7-A720-01 6 110422901 110422901 G A WASF1 Missense_Mutation p.P471L 0.05 tolerated(0.14) possibly_damaging(0.806) TCGA-M7-A721-01 11 118636057 118636057 A C DDX6 Missense_Mutation p.V169G 0.16 deleterious(0) benign(0.029) TCGA-M7-A721-01 11 56468369 56468369 G A OR9G1 Missense_Mutation p.R169H 0.08 tolerated(0.05) benign(0.003) TCGA-M7-A721-01 13 39265100 39265100 G C FREM2 Missense_Mutation p.V1207L 0.13 tolerated(0.11) benign(0.002) TCGA-M7-A721-01 13 48986625 48986625 A G LPAR6 5'UTR 0.12 TCGA-M7-A721-01 14 23858667 23858667 G A MYH6 Missense_Mutation p.R1305W 0.26 deleterious(0) probably_damaging(0.982) TCGA-M7-A721-01 14 32560879 32560879 G A ARHGAP5 Missense_Mutation p.R335K 0.10 tolerated(0.29) benign(0.012) TCGA-M7-A721-01 14 65270402 65270402 T A SPTB Missense_Mutation p.M133L 0.11 tolerated(0.16) possibly_damaging(0.838) TCGA-M7-A721-01 14 72936775 72936775 G A RGS6 Missense_Mutation p.A174T 0.15 deleterious(0) probably_damaging(0.983) TCGA-M7-A721-01 15 101606262 101606262 G A LRRK1 Missense_Mutation p.D1874N 0.08 tolerated_low_confidence(0.11) benign(0.012) TCGA-M7-A721-01 15 102291938 102291938 G A DNM1P47 RNA 0.15 TCGA-M7-A721-01 15 25321077 25321077 G C SNORD116-11 RNA 0.10 TCGA-M7-A721-01 15 35207358 35207358 C T AQR Silent p.L455L 0.07 TCGA-M7-A721-01 15 64445496 64445496 G T SNX22 Missense_Mutation p.R106I 0.06 deleterious(0.03) probably_damaging(0.972) TCGA-M7-A721-01 16 397085 397085 C A AXIN1 5'UTR 0.12 TCGA-M7-A721-01 17 32964623 32964623 C A TMEM132E Missense_Mutation p.P776H 0.12 deleterious(0.02) probably_damaging(0.912) TCGA-M7-A721-01 19 10747165 10747165 C T SLC44A2 Missense_Mutation p.T467M 0.10 deleterious(0) probably_damaging(0.99) TCGA-M7-A721-01 19 44832431 44832431 C G ZNF112 Missense_Mutation p.G633R 0.04 deleterious(0.01) probably_damaging(1) TCGA-M7-A721-01 19 58420529 58420529 C A ZNF417 Missense_Mutation p.V373F 0.04 deleterious(0.02) benign(0.25) TCGA-M7-A721-01 19 8130923 8130923 A C FBN3 Silent p.P2770P 0.21 TCGA-M7-A721-01 1 152636831 152636831 C T LCE2D Missense_Mutation p.R84C 0.09 tolerated_low_confidence(0.18) unknown(0) TCGA-M7-A721-01 1 204985658 204985658 T C NFASC Silent p.S1238S 0.21 TCGA-M7-A721-01 22 36708179 36708179 T A MYH9 Missense_Mutation p.Q548L 0.11 benign(0.046) TCGA-M7-A721-01 22 44342711 44342711 G A PNPLA3 3'UTR 0.55 TCGA-M7-A721-01 22 46319177 46319177 G A WNT7B Silent p.H203H 0.11 TCGA-M7-A721-01 2 160737746 160737746 T C LY75-CD302 Missense_Mutation p.K418E 0.07 tolerated(0.4) probably_damaging(0.953) TCGA-M7-A721-01 2 187495563 187495563 G A ITGAV Missense_Mutation p.G188E 0.09 deleterious(0) probably_damaging(1) TCGA-M7-A721-01 3 50615277 50615277 T G HEMK1 Missense_Mutation p.I212S 0.06 deleterious(0) probably_damaging(0.937) TCGA-M7-A721-01 4 175896818 175896818 C A ADAM29 Missense_Mutation p.P48T 0.07 tolerated(0.43) benign(0.038) TCGA-M7-A721-01 4 23815982 23815982 C T PPARGC1A Missense_Mutation p.R375Q 0.15 deleterious(0) possibly_damaging(0.578) TCGA-M7-A721-01 5 171299876 171299876 C A FBXW11 Missense_Mutation p.R426M 0.11 deleterious(0) probably_damaging(0.993) TCGA-M7-A721-01 5 74014787 74014787 G A HEXB Missense_Mutation p.D470N 0.06 tolerated(1) benign(0.004) TCGA-M7-A721-01 6 41773969 41773969 G A USP49 Silent p.G251G 0.16 TCGA-M7-A721-01 7 142448468 142448468 A C TRBV29-1 Missense_Mutation p.Q21P 0.12 deleterious(0) probably_damaging(1) TCGA-M7-A721-01 7 44801486 44801486 C G ZMIZ2 Silent p.T526T 0.10 TCGA-M7-A721-01 7 99578417 99578417 C G AZGP1 5'Flank 0.09 TCGA-M7-A721-01 8 37632949 37632949 A G PROSC Missense_Mutation p.I183V 0.07 deleterious(0) possibly_damaging(0.785) TCGA-M7-A721-01 8 49641689 49641689 C G EFCAB1 Missense_Mutation p.G163A 0.05 deleterious(0.01) possibly_damaging(0.856) TCGA-M7-A721-01 9 119202943 119202943 G T ASTN2 Missense_Mutation p.H1192N 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-M7-A721-01 9 131860406 131860406 G A CRAT Silent p.A450A 0.04 TCGA-M7-A721-01 9 16419335 16419335 G A BNC2 Silent p.S984S 0.17 TCGA-M7-A721-01 9 5919991 5919991 G C KIAA2026 Nonsense_Mutation p.S2002* 0.06 TCGA-M7-A721-01 X 12938245 12938245 C T TLR8 Silent p.N362N 0.09 TCGA-M7-A721-01 X 23018291 23018291 G T DDX53 Missense_Mutation p.Q39H 0.17 tolerated(0.13) benign(0.416) TCGA-M7-A721-01 X 71425375 71425375 C G ERCC6L Missense_Mutation p.S1081T 0.12 tolerated(0.24) benign(0.013) TCGA-M7-A722-01 10 106927107 106927107 G T SORCS3 Missense_Mutation p.W634L 0.42 tolerated(0.11) possibly_damaging(0.829) TCGA-M7-A722-01 10 124350193 124350193 G A DMBT1 Missense_Mutation p.R707Q 0.39 tolerated(0.72) unknown(0) TCGA-M7-A722-01 11 119535462 119535462 C A PVRL1 Missense_Mutation p.V517L 0.09 deleterious(0) probably_damaging(0.993) TCGA-M7-A722-01 11 18497099 18497099 C T LDHAL6A Missense_Mutation p.R169C 0.46 deleterious(0.03) possibly_damaging(0.658) TCGA-M7-A722-01 11 40136858 40136858 G A LRRC4C Missense_Mutation p.R329W 0.49 deleterious(0) probably_damaging(0.988) TCGA-M7-A722-01 11 6007227 6007227 C T OR52L1 Missense_Mutation p.V312M 0.31 tolerated(0.1) benign(0.061) TCGA-M7-A722-01 12 130648895 130648895 G A FZD10 Missense_Mutation p.D470N 0.16 tolerated(0.1) benign(0.226) TCGA-M7-A722-01 12 26750054 26750054 C A ITPR2 Missense_Mutation p.G1339V 0.28 deleterious(0) probably_damaging(0.997) TCGA-M7-A722-01 14 38061233 38061244 GTTGCCGGAGTC - FOXA1 In_Frame_Del p.D249_N252del 0.56 TCGA-M7-A722-01 16 56531771 56531773 TAT GC BBS2 Frame_Shift_Del p.D560Gfs*23 0.28 TCGA-M7-A722-01 17 48819020 48819020 C A LUC7L3 Silent p.A118A 0.39 TCGA-M7-A722-01 17 7559285 7559285 C T ATP1B2 3'UTR 0.47 TCGA-M7-A722-01 19 19356150 19356150 C T NCAN Missense_Mutation p.P1174L 0.17 deleterious(0) probably_damaging(1) TCGA-M7-A722-01 19 53762473 53762473 G T VN1R2 Missense_Mutation p.S282I 0.41 deleterious(0.03) possibly_damaging(0.613) TCGA-M7-A722-01 1 232596796 232596796 C T SIPA1L2 Missense_Mutation p.G978S 0.06 deleterious(0) probably_damaging(1) TCGA-M7-A722-01 1 24021277 24021277 A G RPL11 Missense_Mutation p.Y131C 0.04 tolerated(0.24) benign(0.33) TCGA-M7-A722-01 1 26139203 26139203 C T SEPN1 Missense_Mutation p.A436V 0.31 deleterious(0.04) possibly_damaging(0.848) TCGA-M7-A722-01 1 9714344 9714344 G A C1orf200 Missense_Mutation p.R51C 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-M7-A722-01 22 29687577 29687577 A G EWSR1 Missense_Mutation p.N339S 0.41 tolerated(0.38) unknown(0) TCGA-M7-A722-01 22 39122093 39122093 C T GTPBP1 Missense_Mutation p.R386C 0.39 deleterious(0) possibly_damaging(0.88) TCGA-M7-A722-01 22 42071072 42071072 G A NHP2L1 Silent p.R84R 0.33 TCGA-M7-A722-01 2 122176233 122176233 C T CLASP1 Missense_Mutation p.R762Q 0.33 deleterious(0.01) benign(0.436) TCGA-M7-A722-01 2 179417860 179417860 A G TTN Missense_Mutation p.S29923P 0.47 TCGA-M7-A722-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.37 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-M7-A722-01 3 108698424 108698424 C A MORC1 Silent p.S805S 0.36 TCGA-M7-A722-01 3 112358730 112358730 C T CCDC80 Missense_Mutation p.R8H 0.35 tolerated_low_confidence(0.36) benign(0) TCGA-M7-A722-01 3 169539973 169539973 G A LRRIQ4 Silent p.P88P 0.40 TCGA-M7-A722-01 3 183210395 183210395 T G KLHL6 Missense_Mutation p.D484A 0.35 deleterious(0) possibly_damaging(0.727) TCGA-M7-A722-01 3 41266101 41266101 C G CTNNB1 Missense_Mutation p.S33C 0.31 deleterious(0) probably_damaging(0.987) TCGA-M7-A722-01 3 49700629 49700629 C T BSN Missense_Mutation p.R3680W 0.42 unknown(0) TCGA-M7-A722-01 3 53157857 53157857 C G RFT1 Splice_Site p.X50_splice 0.33 TCGA-M7-A722-01 4 158257586 158257586 G A GRIA2 Missense_Mutation p.D511N 0.44 deleterious(0) probably_damaging(0.999) TCGA-M7-A722-01 4 164394648 164394648 G A TKTL2 Missense_Mutation p.A80V 0.40 deleterious(0.02) benign(0.039) TCGA-M7-A722-01 6 110300979 110300979 C G GPR6 Missense_Mutation p.L222V 0.73 tolerated(0.2) possibly_damaging(0.573) TCGA-M7-A722-01 6 46111175 46111175 G T ENPP4 Missense_Mutation p.G387V 0.06 deleterious(0) probably_damaging(0.998) TCGA-M7-A723-01 10 104678762 104678762 C T CNNM2 Silent p.I175I 0.03 TCGA-M7-A723-01 15 59506877 59506877 T A MYO1E Missense_Mutation p.I384F 0.04 deleterious(0.01) possibly_damaging(0.903) TCGA-M7-A723-01 15 65686765 65686765 G A IGDCC4 Silent p.Y566Y 0.05 TCGA-M7-A723-01 19 57641660 57641660 T G USP29 Silent p.S539S 0.03 TCGA-M7-A723-01 1 22913059 22913059 G A EPHA8 Missense_Mutation p.A304T 0.07 tolerated(0.09) benign(0.009) TCGA-M7-A723-01 9 139397709 139397709 C T NOTCH1 Missense_Mutation p.D1698N 0.09 tolerated(0.12) probably_damaging(0.928) TCGA-M7-A724-01 10 115372139 115372165 ACGGCAGATGGAACTGCGCCTTTGAGT - NRAP In_Frame_Del p.H1109_P1117del 0.39 TCGA-M7-A724-01 10 37430947 37430947 G A ANKRD30A Nonsense_Mutation p.W318* 0.21 TCGA-M7-A724-01 11 55607153 55607153 C A OR5D16 Missense_Mutation p.T309K 0.53 deleterious(0.04) benign(0.007) TCGA-M7-A724-01 13 96212468 96212468 G T CLDN10 Missense_Mutation p.M101I 0.48 deleterious(0.03) probably_damaging(0.99) TCGA-M7-A724-01 14 53331155 53331155 C T FERMT2 Silent p.V522V 0.48 TCGA-M7-A724-01 17 2868872 2868872 G T RAP1GAP2 Silent p.G177G 0.20 TCGA-M7-A724-01 17 704350 704350 G A NXN Nonsense_Mutation p.R383* 0.47 TCGA-M7-A724-01 17 7080598 7080598 G A ASGR1 Missense_Mutation p.R40C 0.49 tolerated(0.28) benign(0.011) TCGA-M7-A724-01 19 44793323 44793323 T C ZNF235 Missense_Mutation p.T89A 0.48 tolerated(0.15) benign(0.05) TCGA-M7-A724-01 1 157491070 157491070 C T FCRL5 Missense_Mutation p.R751H 0.24 tolerated(0.21) benign(0.262) TCGA-M7-A724-01 1 207867727 207867727 G C CR1L Missense_Mutation p.A165P 0.44 tolerated(0.24) benign(0.101) TCGA-M7-A724-01 1 223986326 223986326 T - TP53BP2 Frame_Shift_Del p.K513Nfs*125 0.50 TCGA-M7-A724-01 1 67424570 67424570 G A MIER1 Missense_Mutation p.E180K 0.43 deleterious(0) possibly_damaging(0.766) TCGA-M7-A724-01 20 31385104 31385104 C T DNMT3B Missense_Mutation p.R497W 0.46 deleterious(0) probably_damaging(0.997) TCGA-M7-A724-01 2 107459777 107459777 C T ST6GAL2 Silent p.P219P 0.53 TCGA-M7-A724-01 2 205989150 205989150 T A PARD3B Missense_Mutation p.I422K 0.11 deleterious(0) benign(0.218) TCGA-M7-A724-01 2 39517448 39517448 A G MAP4K3 Silent p.P433P 0.45 TCGA-M7-A724-01 2 71376384 71376384 C T MPHOSPH10 Missense_Mutation p.A566V 0.40 tolerated(0.11) benign(0.315) TCGA-M7-A724-01 2 95539305 95539305 G A TEKT4 Missense_Mutation p.R180K 0.39 tolerated(0.1) benign(0.192) TCGA-M7-A724-01 3 52551013 52551013 C T STAB1 Silent p.C1459C 0.51 TCGA-M7-A724-01 3 78685178 78685178 C G ROBO1 Missense_Mutation p.D1040H 0.38 deleterious(0.01) possibly_damaging(0.778) TCGA-M7-A724-01 5 149497216 149497216 G A PDGFRB Silent p.D1034D 0.49 TCGA-M7-A724-01 5 153144045 153144045 C A GRIA1 Silent p.I635I 0.35 TCGA-M7-A724-01 5 79741159 79741159 A G ZFYVE16 Missense_Mutation p.K887E 0.38 deleterious(0) probably_damaging(0.997) TCGA-M7-A724-01 6 131915293 131915293 G A MED23 Missense_Mutation p.P1060S 0.46 tolerated(0.79) benign(0.004) TCGA-M7-A724-01 6 17826029 17826029 C A KIF13A Nonsense_Mutation p.E586* 0.47 TCGA-M7-A724-01 6 31599394 31599394 G T PRRC2A Missense_Mutation p.D982Y 0.50 unknown(0) TCGA-M7-A724-01 7 44806203 44806203 G A ZMIZ2 Missense_Mutation p.G866S 0.49 tolerated(0.36) benign(0.005) TCGA-M7-A724-01 8 105160995 105160995 C T RIMS2 Intron 0.19 TCGA-M7-A724-01 8 146108153 146108153 C A ZNF250 Missense_Mutation p.V144L 0.24 tolerated(0.41) benign(0.004) TCGA-M7-A724-01 9 35660414 35660414 C T CCDC107 Missense_Mutation p.A92V 0.37 deleterious(0.02) benign(0.122) TCGA-M7-A724-01 9 35813705 35813705 G - HINT2 Frame_Shift_Del p.P53Qfs*59 0.38 TCGA-M7-A724-01 9 82187726 82187727 - ATGT TLE4 Frame_Shift_Ins p.P10Vfs*17 0.34 TCGA-M7-A724-01 X 128624100 128624100 C T SMARCA1 Missense_Mutation p.E629K 0.83 deleterious(0) probably_damaging(0.947) TCGA-M7-A724-01 X 70375183 70375183 A T NLGN3 Missense_Mutation p.I233F 0.08 deleterious(0) possibly_damaging(0.821) TCGA-M7-A725-01 10 115922869 115922869 T A C10orf118 Missense_Mutation p.L53F 0.39 tolerated_low_confidence(0.08) benign(0.28) TCGA-M7-A725-01 11 108175442 108175442 T A ATM Missense_Mutation p.I1846N 0.40 deleterious(0) possibly_damaging(0.738) TCGA-M7-A725-01 11 118899962 118899962 C T SLC37A4 Missense_Mutation p.E40K 0.35 tolerated(0.22) benign(0.014) TCGA-M7-A725-01 11 46898339 46898339 C T LRP4 Missense_Mutation p.R1107H 0.07 deleterious(0.01) possibly_damaging(0.867) TCGA-M7-A725-01 12 126138738 126138738 G A TMEM132B Missense_Mutation p.V907I 0.32 deleterious(0) possibly_damaging(0.659) TCGA-M7-A725-01 12 129360456 129360456 A G GLT1D1 Intron 0.36 TCGA-M7-A725-01 13 101257321 101257321 G A TMTC4 Missense_Mutation p.T737M 0.04 tolerated(0.12) benign(0.015) TCGA-M7-A725-01 14 71267477 71267477 C T MAP3K9 Missense_Mutation p.V243M 0.47 deleterious(0) possibly_damaging(0.691) TCGA-M7-A725-01 15 25310192 25310193 - A SNORD116-6 RNA 0.35 TCGA-M7-A725-01 17 51900318 51900318 C T KIF2B 5'UTR 0.38 TCGA-M7-A725-01 17 7139382 7139382 C T PHF23 Silent p.V288V 0.21 TCGA-M7-A725-01 18 48604655 48604655 G A SMAD4 Missense_Mutation p.D493N 0.68 deleterious(0) probably_damaging(0.978) TCGA-M7-A725-01 19 11489422 11489422 G A EPOR Missense_Mutation p.P287L 0.40 deleterious(0) probably_damaging(1) TCGA-M7-A725-01 19 17405642 17405642 G A ABHD8 Silent p.C258C 0.12 TCGA-M7-A725-01 19 57908537 57908537 C T ZNF548 Missense_Mutation p.S58L 0.37 deleterious(0) benign(0.128) TCGA-M7-A725-01 1 12333082 12333082 T A VPS13D Missense_Mutation p.V709E 0.21 benign(0.178) TCGA-M7-A725-01 1 17752171 17752171 C T RCC2 Missense_Mutation p.R130H 0.14 deleterious(0.03) probably_damaging(0.959) TCGA-M7-A725-01 1 179079827 179079827 G A ABL2 Intron 0.16 TCGA-M7-A725-01 1 202288000 202288000 G A LGR6 Missense_Mutation p.G857R 0.35 tolerated(0.23) benign(0.001) TCGA-M7-A725-01 1 22204695 22204695 T C HSPG2 Missense_Mutation p.E890G 0.25 benign(0.217) TCGA-M7-A725-01 21 28338099 28338099 C T ADAMTS5 Silent p.P204P 0.45 TCGA-M7-A725-01 21 33887452 33887452 C T EVA1C Silent p.N426N 0.06 TCGA-M7-A725-01 22 21172825 21172825 G A PI4KA Missense_Mutation p.R268C 0.80 deleterious(0.01) benign(0.004) TCGA-M7-A725-01 2 135965229 135965229 C T ZRANB3 Silent p.A928A 0.05 TCGA-M7-A725-01 2 179594623 179594623 A T TTN Missense_Mutation p.N6119K 0.53 TCGA-M7-A725-01 2 200233398 200233398 A T SATB2 Nonsense_Mutation p.Y210* 0.42 TCGA-M7-A725-01 3 142231277 142231277 G C ATR Missense_Mutation p.D1559E 0.33 tolerated(0.33) benign(0.016) TCGA-M7-A725-01 3 167249006 167249006 G C WDR49 Missense_Mutation p.D353E 0.06 tolerated(0.36) benign(0.003) TCGA-M7-A725-01 4 16019994 16019994 G A PROM1 Silent p.S318S 0.35 TCGA-M7-A725-01 6 27218485 27218485 G A PRSS16 Missense_Mutation p.R164H 0.06 tolerated(0.78) benign(0.014) TCGA-M7-A725-01 6 397164 397164 G A IRF4 Silent p.P183P 0.44 TCGA-M7-A725-01 8 110393743 110393743 G A PKHD1L1 Missense_Mutation p.R103K 0.92 deleterious(0.04) possibly_damaging(0.869) TCGA-M7-A725-01 8 113358324 113358324 A G CSMD3 Splice_Site p.X2148_splice 0.21 TCGA-M7-A725-01 8 125989773 125989773 C T ZNF572 Silent p.F421F 0.25 TCGA-M7-A725-01 9 135102298 135102298 G T NTNG2 Missense_Mutation p.C307F 0.31 deleterious(0) probably_damaging(0.956) TCGA-M7-A725-01 9 136323143 136323143 C T ADAMTS13 Missense_Mutation p.A1335V 0.30 tolerated(0.3) benign(0.025) TCGA-M7-A725-01 X 135730414 135730414 G A CD40LG Missense_Mutation p.E3K 0.81 deleterious(0) possibly_damaging(0.54) TCGA-M7-A725-01 X 21875524 21875524 G A YY2 Missense_Mutation p.E308K 0.86 deleterious(0) probably_damaging(0.999) TCGA-MG-AAMC-01 11 118947656 118947656 G T VPS11 Missense_Mutation p.A429S 0.14 tolerated(0.3) probably_damaging(1) TCGA-MG-AAMC-01 11 21555934 21555934 T C NELL1 Missense_Mutation p.S554P 0.45 tolerated(0.06) benign(0.221) TCGA-MG-AAMC-01 15 45453998 45453998 C A DUOX1 Silent p.R1307R 0.36 TCGA-MG-AAMC-01 17 1795214 1795214 C A RPA1 Missense_Mutation p.L547I 0.39 tolerated(0.24) benign(0.298) TCGA-MG-AAMC-01 17 32959839 32959839 G A TMEM132E Nonsense_Mutation p.W443* 0.28 TCGA-MG-AAMC-01 17 33738370 33738370 C T SLFN12 Missense_Mutation p.R575Q 0.05 tolerated_low_confidence(0.42) benign(0.238) TCGA-MG-AAMC-01 19 33149850 33149850 C T ANKRD27 Silent p.L24L 0.44 TCGA-MG-AAMC-01 19 38858384 38858384 C T CATSPERG Silent p.D966D 0.37 TCGA-MG-AAMC-01 19 42738596 42738596 G A GSK3A Silent p.V271V 0.27 TCGA-MG-AAMC-01 19 52955106 52955106 C T ZNF578 5'Flank 0.36 TCGA-MG-AAMC-01 20 13756820 13756829 CTTTCTGAAT - ESF1 Frame_Shift_Del p.D242Afs*5 0.29 TCGA-MG-AAMC-01 20 33665958 33665958 G A TRPC4AP Missense_Mutation p.T63M 0.50 deleterious(0.03) benign(0.003) TCGA-MG-AAMC-01 22 30691024 30691024 A G TBC1D10A Missense_Mutation p.V189A 0.40 deleterious(0) probably_damaging(0.973) TCGA-MG-AAMC-01 22 38122318 38122318 C T TRIOBP Missense_Mutation p.S1252F 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-MG-AAMC-01 2 220166408 220166408 G A PTPRN Missense_Mutation p.A343V 0.30 tolerated(0.11) possibly_damaging(0.471) TCGA-MG-AAMC-01 3 112644012 112644012 T A CD200R1 Missense_Mutation p.L266F 0.31 tolerated(0.18) possibly_damaging(0.571) TCGA-MG-AAMC-01 3 133664084 133664084 G T SLCO2A1 Missense_Mutation p.P439Q 0.11 tolerated(0.85) possibly_damaging(0.859) TCGA-MG-AAMC-01 3 47125274 47125274 G C SETD2 Missense_Mutation p.P1999R 0.38 tolerated(0.29) possibly_damaging(0.534) TCGA-MG-AAMC-01 5 138857857 138857857 G A TMEM173 Missense_Mutation p.R253W 0.43 deleterious(0.01) possibly_damaging(0.799) TCGA-MG-AAMC-01 5 160063209 160063209 T A ATP10B Missense_Mutation p.T370S 0.40 deleterious(0) probably_damaging(1) TCGA-MG-AAMC-01 5 79028017 79028017 T A CMYA5 Missense_Mutation p.S1143R 0.09 benign(0.1) TCGA-MG-AAMC-01 7 149191569 149191569 G A ZNF746 Missense_Mutation p.T17M 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-MG-AAMC-01 7 69364311 69364311 C T AUTS2 Missense_Mutation p.R117C 0.38 tolerated(0.16) benign(0.231) TCGA-MG-AAMC-01 7 91699396 91699396 T G AKAP9 Missense_Mutation p.L2128R 0.48 probably_damaging(1) TCGA-MG-AAMC-01 7 99725140 99725140 A C MBLAC1 Missense_Mutation p.D41A 0.44 deleterious(0) probably_damaging(0.919) TCGA-MG-AAMC-01 8 142202641 142202641 C T DENND3 Missense_Mutation p.A1092V 0.40 tolerated(0.15) benign(0.014) TCGA-MG-AAMC-01 8 145749890 145749890 G A LRRC24 Missense_Mutation p.R125C 0.50 deleterious(0) probably_damaging(0.998) TCGA-QU-A6IL-01 11 1215749 1215749 C T MUC5AC RNA 0.19 TCGA-QU-A6IL-01 11 128844290 128844290 T C ARHGAP32 Silent p.S920S 0.15 TCGA-QU-A6IL-01 11 5510455 5510455 T C OR52D1 Silent p.G173G 0.04 TCGA-QU-A6IL-01 11 56380363 56380363 T G OR5M1 Missense_Mutation p.N206H 0.33 deleterious(0) benign(0.052) TCGA-QU-A6IL-01 12 118471917 118471917 C T WSB2 3'UTR 0.37 TCGA-QU-A6IL-01 14 38061223 38061228 TCTCGA - FOXA1 In_Frame_Del p.F254_N256delinsY 0.46 TCGA-QU-A6IL-01 16 47694671 47694671 G A PHKB Missense_Mutation p.D713N 0.46 tolerated(0.06) benign(0.201) TCGA-QU-A6IL-01 16 89760586 89760586 G A CDK10 Missense_Mutation p.R205Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-QU-A6IL-01 17 40323995 40323995 G A KCNH4 Silent p.L336L 0.16 TCGA-QU-A6IL-01 17 42989096 42989096 C A GFAP Missense_Mutation p.D284Y 0.41 deleterious(0) probably_damaging(0.973) TCGA-QU-A6IL-01 19 15278212 15278212 G A NOTCH3 Missense_Mutation p.P1737L 0.36 tolerated(0.08) benign(0.003) TCGA-QU-A6IL-01 19 19312449 19312449 C T NR2C2AP 3'UTR 0.06 TCGA-QU-A6IL-01 19 21558687 21558687 G A ZNF738 Silent p.K80K 0.27 TCGA-QU-A6IL-01 19 38230198 38230198 C A ZNF573 Missense_Mutation p.G398V 0.15 tolerated(0.26) benign(0.279) TCGA-QU-A6IL-01 19 38633280 38633280 C A SIPA1L3 Silent p.R1155R 0.37 TCGA-QU-A6IL-01 19 40540948 40540948 A G ZNF780B Silent p.F606F 0.06 TCGA-QU-A6IL-01 19 58490217 58490217 G C ZNF606 Missense_Mutation p.L611V 0.51 deleterious(0) probably_damaging(0.991) TCGA-QU-A6IL-01 1 155147951 155147951 C T TRIM46 Silent p.N51N 0.07 TCGA-QU-A6IL-01 1 231931019 231931019 T C DISC1 Missense_Mutation p.S556P 0.11 deleterious(0.02) benign(0.274) TCGA-QU-A6IL-01 20 46294679 46294679 G A SULF2 Silent p.N608N 0.09 TCGA-QU-A6IL-01 20 5904578 5904578 C T CHGB Silent p.D596D 0.09 TCGA-QU-A6IL-01 2 225362501 225362501 A C CUL3 Missense_Mutation p.L559R 0.31 deleterious(0) probably_damaging(0.973) TCGA-QU-A6IL-01 2 228846444 228846444 C A SPHKAP Nonsense_Mutation p.E1698* 0.08 TCGA-QU-A6IL-01 2 69173530 69173530 C G GKN2 Silent p.L126L 0.44 TCGA-QU-A6IL-01 3 101535763 101535763 G A NXPE3 Silent p.E349E 0.06 TCGA-QU-A6IL-01 3 148885755 148885755 C A HPS3 Missense_Mutation p.L958M 0.42 deleterious(0) probably_damaging(0.986) TCGA-QU-A6IL-01 3 38651315 38651315 G A SCN5A Missense_Mutation p.R282C 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-QU-A6IL-01 3 52304795 52304795 A G WDR82 Silent p.Y64Y 0.09 TCGA-QU-A6IL-01 4 146650335 146650335 G T C4orf51 Missense_Mutation p.W127C 0.42 tolerated(0.07) benign(0.373) TCGA-QU-A6IL-01 4 169173727 169173727 C T DDX60 Missense_Mutation p.C1213Y 0.38 tolerated(1) benign(0) TCGA-QU-A6IL-01 4 52960700 52960700 G A SPATA18 Missense_Mutation p.R524Q 0.08 tolerated(0.06) probably_damaging(0.947) TCGA-QU-A6IL-01 5 140237684 140237684 G A PCDHA10 Missense_Mutation p.G684D 0.32 tolerated_low_confidence(0.08) benign(0.043) TCGA-QU-A6IL-01 7 122303546 122303546 A - CADPS2 Frame_Shift_Del p.F177Lfs*5 0.42 TCGA-QU-A6IL-01 8 1900969 1900969 C T ARHGEF10 Silent p.L1166L 0.74 TCGA-QU-A6IL-01 9 111761374 111761374 T C CTNNAL1 Missense_Mutation p.I102V 0.44 tolerated(0.65) benign(0.009) TCGA-QU-A6IL-01 9 114345847 114345848 GT - PTGR1 Frame_Shift_Del p.L134* 0.14 TCGA-QU-A6IL-01 9 137600400 137600400 G A COL5A1 Intron 0.06 TCGA-QU-A6IL-01 9 140809212 140809212 G A CACNA1B Silent p.E243E 0.19 TCGA-QU-A6IL-01 9 21854677 21854677 G A MTAP Silent p.K166K 0.39 TCGA-QU-A6IL-01 9 37740871 37740871 C G FRMPD1 Silent p.G782G 0.33 TCGA-QU-A6IM-01 10 123256220 123256220 T C FGFR2 Missense_Mutation p.I564M 0.26 deleterious(0) possibly_damaging(0.449) TCGA-QU-A6IM-01 10 31809478 31809478 A G ZEB1 Missense_Mutation p.I406M 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-QU-A6IM-01 10 52595854 52595854 G A A1CF Missense_Mutation p.A203V 0.23 deleterious(0) possibly_damaging(0.887) TCGA-QU-A6IM-01 10 64403689 64403689 T A ZNF365 Intron 0.15 TCGA-QU-A6IM-01 10 6470061 6470061 T C PRKCQ 3'UTR 0.31 TCGA-QU-A6IM-01 10 87484336 87484336 A T GRID1 Missense_Mutation p.L544Q 0.41 deleterious(0) probably_damaging(1) TCGA-QU-A6IM-01 10 95070306 95070306 T A MYOF Missense_Mutation p.K1995M 0.23 deleterious(0) probably_damaging(0.977) TCGA-QU-A6IM-01 10 96802756 96802756 T C CYP2C8 Missense_Mutation p.Y347C 0.28 deleterious(0) probably_damaging(1) TCGA-QU-A6IM-01 11 114401240 114401240 A T NXPE1 Missense_Mutation p.Y22N 0.29 deleterious(0) probably_damaging(0.999) TCGA-QU-A6IM-01 12 111954061 111954061 C A ATXN2 Silent p.P584P 0.22 TCGA-QU-A6IM-01 12 4479847 4479847 G A FGF23 Missense_Mutation p.R140W 0.25 deleterious(0) possibly_damaging(0.901) TCGA-QU-A6IM-01 12 69985925 69985925 A T CCT2 Missense_Mutation p.T246S 0.35 tolerated(0.12) benign(0.019) TCGA-QU-A6IM-01 12 9013852 9013852 A C A2ML1 Missense_Mutation p.N1154T 0.21 deleterious(0.02) benign(0.158) TCGA-QU-A6IM-01 14 52520476 52520476 T C NID2 Missense_Mutation p.N417S 0.25 tolerated(0.55) benign(0.003) TCGA-QU-A6IM-01 15 43896262 43896262 G - STRC Frame_Shift_Del p.P1436Hfs*11 0.10 TCGA-QU-A6IM-01 16 33647512 33647512 A G RP11-812E19.9 Silent p.L30L 0.04 TCGA-QU-A6IM-01 17 15234581 15234581 G C TEKT3 Missense_Mutation p.Q108E 0.09 tolerated(0.09) benign(0.005) TCGA-QU-A6IM-01 17 17250218 17250218 C T NT5M Missense_Mutation p.A215V 0.27 deleterious(0.04) benign(0.012) TCGA-QU-A6IM-01 17 3030696 3030696 A T OR1G1 Silent p.I50I 0.27 TCGA-QU-A6IM-01 17 47696644 47696644 A C SPOP Missense_Mutation p.F102V 0.42 tolerated(0.11) probably_damaging(1) TCGA-QU-A6IM-01 17 5383387 5383387 T - DERL2 Frame_Shift_Del p.T201Hfs*5 0.21 TCGA-QU-A6IM-01 18 56985676 56985676 T - CPLX4 Frame_Shift_Del p.S7Vfs*2 0.29 TCGA-QU-A6IM-01 18 77208864 77208864 C G NFATC1 Missense_Mutation p.A477G 0.32 deleterious(0) probably_damaging(0.911) TCGA-QU-A6IM-01 19 15791307 15791307 A C CYP4F12 Missense_Mutation p.N168T 0.23 tolerated(0.12) benign(0.363) TCGA-QU-A6IM-01 19 22575729 22575729 T A ZNF98 Missense_Mutation p.Y103F 0.23 tolerated(0.05) benign(0.029) TCGA-QU-A6IM-01 19 38684211 38684211 C T SIPA1L3 Missense_Mutation p.S1544L 0.24 deleterious(0) probably_damaging(0.978) TCGA-QU-A6IM-01 19 50000530 50000530 A C RPS11 Missense_Mutation p.K32T 0.22 deleterious(0.02) benign(0.082) TCGA-QU-A6IM-01 19 57089490 57089490 T G ZNF470 Missense_Mutation p.Y565D 0.24 deleterious(0) probably_damaging(1) TCGA-QU-A6IM-01 1 143767776 143767776 A C PPIAL4G Missense_Mutation p.F25V 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.688) TCGA-QU-A6IM-01 1 147230980 147230980 A T GJA5 Missense_Mutation p.Y123N 0.22 tolerated(0.55) benign(0.372) TCGA-QU-A6IM-01 1 160466070 160466070 A T SLAMF6 Missense_Mutation p.W55R 0.26 deleterious(0.01) probably_damaging(1) TCGA-QU-A6IM-01 1 17914091 17914091 G C ARHGEF10L Missense_Mutation p.E58D 0.27 tolerated_low_confidence(0.13) benign(0.001) TCGA-QU-A6IM-01 1 183539961 183539961 A T NCF2 Missense_Mutation p.V208E 0.36 deleterious(0) probably_damaging(0.99) TCGA-QU-A6IM-01 1 186099650 186099650 T C HMCN1 Missense_Mutation p.F4351L 0.25 probably_damaging(0.958) TCGA-QU-A6IM-01 1 205768182 205768182 G T SLC41A1 Silent p.V200V 0.24 TCGA-QU-A6IM-01 1 216246269 216246269 A G USH2A Missense_Mutation p.V1940A 0.29 benign(0.003) TCGA-QU-A6IM-01 1 23419974 23419974 G T LUZP1 Missense_Mutation p.L261M 0.35 tolerated(0.06) probably_damaging(0.99) TCGA-QU-A6IM-01 1 38338661 38338661 T C INPP5B Missense_Mutation p.T710A 0.19 tolerated(0.54) benign(0.019) TCGA-QU-A6IM-01 20 44167963 44167963 G A WFDC6 Silent p.I28I 0.08 TCGA-QU-A6IM-01 21 18924261 18924261 G T CXADR Silent p.L135L 0.07 TCGA-QU-A6IM-01 21 35757886 35757886 A G SMIM11 Silent p.K41K 0.19 TCGA-QU-A6IM-01 22 17288741 17288741 T C XKR3 Missense_Mutation p.I75V 0.36 deleterious(0.02) benign(0.394) TCGA-QU-A6IM-01 22 26286730 26286730 A T MYO18B Missense_Mutation p.D1441V 0.25 deleterious(0.01) possibly_damaging(0.786) TCGA-QU-A6IM-01 22 41169988 41169988 T C SLC25A17 Silent p.T243T 0.18 TCGA-QU-A6IM-01 22 46508689 46508691 CTA - FLJ27365 3'UTR 0.23 TCGA-QU-A6IM-01 2 167289254 167289254 G T SCN7A Nonsense_Mutation p.Y722* 0.25 TCGA-QU-A6IM-01 2 219888790 219888790 A T CCDC108 Missense_Mutation p.W848R 0.24 tolerated(0.29) possibly_damaging(0.831) TCGA-QU-A6IM-01 2 225652092 225652092 T A DOCK10 Missense_Mutation p.Y1814F 0.29 deleterious(0) benign(0.122) TCGA-QU-A6IM-01 2 60687905 60687905 G A BCL11A Silent p.S714S 0.06 TCGA-QU-A6IM-01 3 111795980 111795980 G A TMPRSS7 Missense_Mutation p.R612K 0.19 tolerated(0.6) benign(0.007) TCGA-QU-A6IM-01 3 155200544 155200544 T C PLCH1 Missense_Mutation p.T1099A 0.25 tolerated_low_confidence(0.34) benign(0.002) TCGA-QU-A6IM-01 3 157081347 157081347 A G VEPH1 Missense_Mutation p.I514T 0.28 tolerated(0.62) benign(0.002) TCGA-QU-A6IM-01 3 62751641 62751641 G T CADPS Missense_Mutation p.Q154K 0.35 tolerated(0.18) benign(0.042) TCGA-QU-A6IM-01 4 13606062 13606062 C T BOD1L1 Missense_Mutation p.R821H 0.14 probably_damaging(0.999) TCGA-QU-A6IM-01 4 89702352 89702352 T C FAM13A Silent p.K474K 0.30 TCGA-QU-A6IM-01 5 112227407 112227407 A G ZRSR1 Missense_Mutation p.Y24C 0.16 deleterious(0.02) benign(0.129) TCGA-QU-A6IM-01 5 167489162 167489162 A G TENM2 Silent p.S469S 0.29 TCGA-QU-A6IM-01 5 169508849 169508849 T A DOCK2 Missense_Mutation p.L1764Q 0.27 tolerated_low_confidence(0.05) benign(0.235) TCGA-QU-A6IM-01 5 170149724 170149724 T A KCNIP1 Missense_Mutation p.V123E 0.16 deleterious(0) probably_damaging(1) TCGA-QU-A6IM-01 5 40853136 40853136 C T CARD6 Silent p.L568L 0.05 TCGA-QU-A6IM-01 5 79933789 79933789 T C DHFR Silent p.L94L 0.27 TCGA-QU-A6IM-01 6 132860433 132860433 G A TAAR9 Silent p.S335S 0.26 TCGA-QU-A6IM-01 6 31747573 31747573 G C VARS Missense_Mutation p.L1034V 0.11 tolerated(0.27) benign(0.088) TCGA-QU-A6IM-01 6 39163706 39163706 T A KCNK5 Missense_Mutation p.N82Y 0.47 deleterious(0.03) possibly_damaging(0.501) TCGA-QU-A6IM-01 6 42657359 42657359 T G UBR2 Missense_Mutation p.Y1693D 0.29 deleterious(0) possibly_damaging(0.837) TCGA-QU-A6IM-01 6 47847438 47847438 T A PTCHD4 Missense_Mutation p.Y381F 0.33 tolerated(0.29) probably_damaging(0.982) TCGA-QU-A6IM-01 6 79770385 79770385 T A PHIP Missense_Mutation p.S114C 0.11 deleterious(0.01) probably_damaging(0.971) TCGA-QU-A6IM-01 6 84140595 84140595 C T ME1 Splice_Site p.X26_splice 0.25 TCGA-QU-A6IM-01 6 94066494 94066494 G C EPHA7 Missense_Mutation p.S422C 0.19 deleterious(0) probably_damaging(0.949) TCGA-QU-A6IM-01 7 100681549 100681549 A G MUC17 Missense_Mutation p.I2284M 0.28 unknown(0) TCGA-QU-A6IM-01 7 23556149 23556149 T A TRA2A Splice_Site p.X57_splice 0.51 TCGA-QU-A6IM-01 7 63721228 63721228 G C ZNF679 Missense_Mutation p.K61N 0.06 tolerated(0.1) possibly_damaging(0.617) TCGA-QU-A6IM-01 8 32599590 32599590 G T NRG1 Intron 0.36 TCGA-QU-A6IM-01 9 109691723 109691723 C G ZNF462 Missense_Mutation p.L1844V 0.34 probably_damaging(0.985) TCGA-QU-A6IM-01 9 131071863 131071863 G C TRUB2 Missense_Mutation p.S321C 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.606) TCGA-QU-A6IM-01 9 132854651 132854651 G A GPR107 Missense_Mutation p.R285Q 0.05 tolerated(0.34) possibly_damaging(0.72) TCGA-QU-A6IM-01 9 95043126 95043126 T C IARS Missense_Mutation p.E216G 0.30 deleterious(0.04) benign(0.143) TCGA-QU-A6IM-01 X 28807502 28807502 T A IL1RAPL1 Silent p.T14T 0.08 TCGA-QU-A6IM-01 X 34149502 34149502 A T FAM47A Nonsense_Mutation p.C298* 0.75 TCGA-QU-A6IM-01 X 53578098 53578098 G A HUWE1 Missense_Mutation p.A3050V 0.06 benign(0.079) TCGA-QU-A6IN-01 10 27688043 27688043 A G PTCHD3 Missense_Mutation p.I495T 0.41 tolerated(0.12) benign(0.198) TCGA-QU-A6IN-01 11 46726592 46726592 C T ZNF408 Missense_Mutation p.R448C 0.10 deleterious(0) probably_damaging(0.999) TCGA-QU-A6IN-01 11 60658695 60658695 G A PRPF19 Silent p.H486H 0.36 TCGA-QU-A6IN-01 12 42860182 42860182 T C PRICKLE1 Missense_Mutation p.I197V 0.45 deleterious(0.05) benign(0.381) TCGA-QU-A6IN-01 14 38061208 38061208 G A FOXA1 Missense_Mutation p.R261C 0.35 deleterious(0) probably_damaging(1) TCGA-QU-A6IN-01 15 50788105 50788105 G T USP8 Missense_Mutation p.A907S 0.47 deleterious(0.05) probably_damaging(0.943) TCGA-QU-A6IN-01 15 71952952 71952952 G T THSD4 Missense_Mutation p.Q412H 0.30 tolerated(0.17) benign(0.038) TCGA-QU-A6IN-01 17 18923109 18923109 C T SLC5A10 Silent p.C514C 0.53 TCGA-QU-A6IN-01 17 38182576 38182576 A C MED24 Silent p.T606T 0.38 TCGA-QU-A6IN-01 17 39316279 39316279 C T KRTAP4-4 3'UTR 0.27 TCGA-QU-A6IN-01 17 42169758 42169758 C A HDAC5 Missense_Mutation p.G305W 0.06 deleterious(0.01) probably_damaging(0.976) TCGA-QU-A6IN-01 17 65907564 65907564 C T BPTF Silent p.D1188D 0.57 TCGA-QU-A6IN-01 18 48333127 48333127 G A MRO Missense_Mutation p.R79C 0.09 deleterious(0) probably_damaging(1) TCGA-QU-A6IN-01 18 5419740 5419740 C T EPB41L3 Silent p.T492T 0.17 TCGA-QU-A6IN-01 1 103468003 103468003 T A COL11A1 Missense_Mutation p.Q693L 0.38 unknown(0) TCGA-QU-A6IN-01 1 1684290 1684290 C A NADK 3'UTR 0.09 TCGA-QU-A6IN-01 1 43913222 43913222 T A SZT2 Nonsense_Mutation p.L3041* 0.36 TCGA-QU-A6IN-01 1 68614298 68614298 C T WLS Missense_Mutation p.G338R 0.15 tolerated(0.09) probably_damaging(0.949) TCGA-QU-A6IN-01 21 38311178 38311178 T C HLCS Silent p.E2E 0.40 TCGA-QU-A6IN-01 22 37263465 37263465 C T NCF4 Silent p.I101I 0.28 TCGA-QU-A6IN-01 2 120567473 120567473 T A PTPN4 Missense_Mutation p.V15E 0.05 deleterious(0) probably_damaging(0.991) TCGA-QU-A6IN-01 2 131521766 131521766 G A AMER3 Silent p.G707G 0.17 TCGA-QU-A6IN-01 2 73828485 73828485 C T ALMS1 Silent p.D4011D 0.40 TCGA-QU-A6IN-01 3 128758620 128758620 T C EFCC1 Silent p.L576L 0.06 TCGA-QU-A6IN-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.33 tolerated(0.11) possibly_damaging(0.529) TCGA-QU-A6IN-01 4 38776169 38776169 G A TLR10 Missense_Mutation p.T348M 0.45 deleterious(0.03) benign(0.037) TCGA-QU-A6IN-01 4 62813870 62813870 G A LPHN3 Missense_Mutation p.R826H 0.46 tolerated(0.08) benign(0.02) TCGA-QU-A6IN-01 4 87928428 87928428 C T AFF1 Intron 0.13 TCGA-QU-A6IN-01 4 94750559 94750559 G A ATOH1 Missense_Mutation p.R161Q 0.53 deleterious(0) probably_damaging(0.992) TCGA-QU-A6IN-01 5 112228018 112228018 G A ZRSR1 Missense_Mutation p.A228T 0.09 deleterious(0.02) benign(0.266) TCGA-QU-A6IN-01 6 87726074 87726074 C T HTR1E Missense_Mutation p.P341L 0.40 deleterious(0) probably_damaging(1) TCGA-QU-A6IN-01 9 6504676 6504676 C T UHRF2 Silent p.F749F 0.43 TCGA-QU-A6IN-01 9 98222052 98222052 C T PTCH1 Missense_Mutation p.R906H 0.11 deleterious(0) probably_damaging(0.997) TCGA-QU-A6IN-01 X 26212779 26212779 T A MAGEB6 Missense_Mutation p.S272R 0.83 tolerated(0.31) possibly_damaging(0.726) TCGA-QU-A6IO-01 11 118037554 118037554 G A SCN2B 3'UTR 0.28 TCGA-QU-A6IO-01 11 1901362 1901362 C A LSP1 Missense_Mutation p.H161Q 0.16 tolerated_low_confidence(0.06) benign(0.25) TCGA-QU-A6IO-01 11 194572 194572 C A SCGB1C1 3'UTR 0.15 TCGA-QU-A6IO-01 11 55370956 55370956 C - OR4C11 Frame_Shift_Del p.K298Nfs*18 0.14 TCGA-QU-A6IO-01 11 55406191 55406191 C T OR4P4 Missense_Mutation p.R120C 0.26 deleterious(0.04) benign(0.232) TCGA-QU-A6IO-01 11 72418283 72418283 C T ARAP1 Missense_Mutation p.G554R 0.40 tolerated(0.27) possibly_damaging(0.787) TCGA-QU-A6IO-01 12 113321171 113321171 G A RPH3A Missense_Mutation p.G467D 0.12 deleterious(0) probably_damaging(1) TCGA-QU-A6IO-01 12 56295538 56295538 G A WIBG 3'UTR 0.24 TCGA-QU-A6IO-01 13 108862482 108862482 G A LIG4 Missense_Mutation p.H379Y 0.11 deleterious(0.01) benign(0.002) TCGA-QU-A6IO-01 13 31506874 31506874 G T TEX26 Missense_Mutation p.A8S 0.16 deleterious(0.02) benign(0.178) TCGA-QU-A6IO-01 15 50168708 50168708 G T ATP8B4 Missense_Mutation p.Q932K 0.23 tolerated(1) benign(0.006) TCGA-QU-A6IO-01 16 56899123 56899123 C T SLC12A3 5'UTR 0.11 TCGA-QU-A6IO-01 17 38933946 38933946 A G KRT27 Silent p.S337S 0.18 TCGA-QU-A6IO-01 17 80739569 80739569 T C TBCD Missense_Mutation p.I248T 0.22 tolerated(0.35) benign(0.142) TCGA-QU-A6IO-01 19 11470257 11470257 C T DKFZP761J1410 Intron 0.20 TCGA-QU-A6IO-01 19 55496573 55496573 T G NLRP2 Missense_Mutation p.L730R 0.07 deleterious(0) possibly_damaging(0.866) TCGA-QU-A6IO-01 1 11345718 11345718 G A UBIAD1 Missense_Mutation p.V183M 0.07 deleterious(0.01) benign(0.067) TCGA-QU-A6IO-01 1 155646464 155646464 T C YY1AP1 Missense_Mutation p.M205V 0.16 tolerated(0.06) benign(0.044) TCGA-QU-A6IO-01 1 157737056 157737056 G A FCRL2 Missense_Mutation p.A376V 0.25 tolerated(0.16) benign(0.086) TCGA-QU-A6IO-01 1 158449735 158449735 C A OR10R2 Missense_Mutation p.A23E 0.09 tolerated(0.9) benign(0.002) TCGA-QU-A6IO-01 1 228238397 228238397 C T WNT3A Silent p.A118A 0.55 TCGA-QU-A6IO-01 1 231299652 231299652 A C TRIM67 Missense_Mutation p.M313L 0.33 tolerated(0.3) benign(0.092) TCGA-QU-A6IO-01 1 248569715 248569715 G A OR2T1 Silent p.R140R 0.09 TCGA-QU-A6IO-01 1 32622470 32622470 A T KPNA6 Missense_Mutation p.N52I 0.14 deleterious(0.01) probably_damaging(0.967) TCGA-QU-A6IO-01 20 21689987 21689987 C T PAX1 Missense_Mutation p.A396V 0.26 deleterious_low_confidence(0.01) benign(0.242) TCGA-QU-A6IO-01 20 34312500 34312500 C T RBM39 Missense_Mutation p.A227T 0.24 tolerated(0.35) benign(0.015) TCGA-QU-A6IO-01 20 35383221 35383221 C T DSN1 Silent p.L302L 0.19 TCGA-QU-A6IO-01 20 43056985 43056985 C T HNF4A Silent p.S380S 0.24 TCGA-QU-A6IO-01 20 5931077 5931077 A T TRMT6 5'UTR 0.15 TCGA-QU-A6IO-01 22 23980782 23980782 G A GUSBP11 RNA 0.39 TCGA-QU-A6IO-01 2 157182242 157182244 CTT - NR4A2 3'UTR 0.08 TCGA-QU-A6IO-01 2 177016758 177016758 G A HOXD4 Missense_Mutation p.V133I 0.12 deleterious(0.01) benign(0.223) TCGA-QU-A6IO-01 2 211438054 211438054 A T CPS1 Silent p.G59G 0.35 TCGA-QU-A6IO-01 2 48573435 48573435 T C FOXN2 Missense_Mutation p.Y28H 0.30 tolerated(0.43) benign(0.004) TCGA-QU-A6IO-01 3 27761814 27761814 C A EOMES Missense_Mutation p.R295L 0.08 deleterious(0) probably_damaging(0.964) TCGA-QU-A6IO-01 4 53229 53229 C T ZNF595 5'UTR 0.08 TCGA-QU-A6IO-01 5 150415234 150415234 C T TNIP1 Missense_Mutation p.R477H 0.04 deleterious(0) probably_damaging(0.97) TCGA-QU-A6IO-01 6 13592062 13592062 C A SIRT5 Silent p.V137V 0.24 TCGA-QU-A6IO-01 6 49986788 49986788 T G DEFB110 Silent p.R36R 0.26 TCGA-QU-A6IO-01 6 76373050 76373050 A G SENP6 Silent p.L270L 0.17 TCGA-QU-A6IO-01 7 150773092 150773092 C A SLC4A2 Intron 0.30 TCGA-QU-A6IO-01 7 86394349 86394349 G T GRM3 5'UTR 0.31 TCGA-QU-A6IO-01 8 41836190 41836190 G A KAT6A Missense_Mutation p.P338L 0.26 probably_damaging(0.986) TCGA-QU-A6IO-01 9 130477855 130477855 A G PTRH1 Silent p.L22L 0.34 TCGA-QU-A6IO-01 9 133928258 133928258 C T LAMC3 Silent p.D615D 0.11 TCGA-QU-A6IO-01 9 136256483 136256483 T G C9orf96 Missense_Mutation p.L165R 0.05 deleterious(0) probably_damaging(0.995) TCGA-QU-A6IO-01 9 3225020 3225021 - A RFX3 3'UTR 0.25 TCGA-QU-A6IP-01 10 123659394 123659395 - GC ATE1 Intron 0.12 TCGA-QU-A6IP-01 11 123886915 123886915 C T OR10G4 Silent p.L212L 0.19 TCGA-QU-A6IP-01 12 11461248 11461248 C T PRB4 Silent p.K223K 0.24 TCGA-QU-A6IP-01 12 26564280 26564280 A - ITPR2 Frame_Shift_Del p.S2458Hfs*33 0.18 TCGA-QU-A6IP-01 14 74346776 74346776 A G PTGR2 Missense_Mutation p.I250V 0.29 tolerated(0.42) benign(0.034) TCGA-QU-A6IP-01 15 34015067 34015067 C T RYR3 Silent p.D2257D 0.28 TCGA-QU-A6IP-01 16 31473879 31473881 TAA - ARMC5 In_Frame_Del p.N338del 0.13 TCGA-QU-A6IP-01 19 14083867 14083867 G A RFX1 Silent p.A334A 0.23 TCGA-QU-A6IP-01 1 214171320 214171320 G A PROX1 Missense_Mutation p.R481H 0.14 tolerated(0.05) probably_damaging(0.998) TCGA-QU-A6IP-01 1 51049325 51049325 T C FAF1 Missense_Mutation p.R344G 0.24 deleterious(0) probably_damaging(0.999) TCGA-QU-A6IP-01 2 27608655 27608655 T C PPM1G Missense_Mutation p.E123G 0.07 tolerated(0.06) benign(0.403) TCGA-QU-A6IP-01 3 39180260 39180260 G A TTC21A Missense_Mutation p.R1315Q 0.16 tolerated(0.49) benign(0.001) TCGA-QU-A6IP-01 4 44682800 44682800 G A GUF1 Missense_Mutation p.A123T 0.24 deleterious(0.02) probably_damaging(1) TCGA-QU-A6IP-01 5 140616414 140616414 A G PCDHB18 RNA 0.18 TCGA-QU-A6IP-01 5 40854090 40854090 A G CARD6 Missense_Mutation p.I886V 0.26 tolerated(0.23) benign(0.001) TCGA-QU-A6IP-01 6 32036898 32036898 G A TNXB Missense_Mutation p.T1868M 0.22 benign(0.014) TCGA-QU-A6IP-01 8 144995923 144995923 C T PLEC Missense_Mutation p.R2826H 0.15 benign(0.315) TCGA-QU-A6IP-01 9 23692530 23692530 T G ELAVL2 3'UTR 0.20 TCGA-QU-A6IP-01 X 102337986 102337986 G A NXF3 Nonsense_Mutation p.Q213* 0.50 TCGA-QU-A6IP-01 X 127185962 127185962 T G ACTRT1 Missense_Mutation p.E75A 0.04 deleterious(0.01) benign(0.029) TCGA-SU-A7E7-01 10 104414839 104414839 G A TRIM8 Silent p.E223E 0.12 TCGA-SU-A7E7-01 11 2436267 2436267 G A TRPM5 Missense_Mutation p.P497L 0.12 tolerated(0.36) benign(0.016) TCGA-SU-A7E7-01 11 74800536 74800536 C T OR2AT4 Missense_Mutation p.D75N 0.12 deleterious(0) probably_damaging(0.996) TCGA-SU-A7E7-01 14 99961911 99961911 C T CCNK Missense_Mutation p.T119I 0.12 tolerated(0.1) possibly_damaging(0.883) TCGA-SU-A7E7-01 16 67654616 67654616 G A CTCF Missense_Mutation p.R368H 0.05 deleterious(0) probably_damaging(0.999) TCGA-SU-A7E7-01 17 19215386 19215386 G A EPN2 Missense_Mutation p.D301N 0.07 deleterious(0) probably_damaging(0.991) TCGA-SU-A7E7-01 17 20109180 20109180 A G SPECC1 Silent p.L606L 0.11 TCGA-SU-A7E7-01 17 7405016 7405016 G A POLR2A Missense_Mutation p.G773R 0.05 probably_damaging(1) TCGA-SU-A7E7-01 17 74625601 74625601 C T ST6GALNAC1 Silent p.P108P 0.09 TCGA-SU-A7E7-01 17 7852810 7852810 G T CNTROB Silent p.R920R 0.14 TCGA-SU-A7E7-01 19 11832577 11832577 G T ZNF823 Missense_Mutation p.A591E 0.05 deleterious(0) possibly_damaging(0.902) TCGA-SU-A7E7-01 19 42351581 42351581 G C DMRTC2 Missense_Mutation p.E29Q 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-SU-A7E7-01 1 223116655 223116655 C A DISP1 Missense_Mutation p.Q164K 0.10 tolerated(0.34) benign(0.002) TCGA-SU-A7E7-01 1 228491377 228491377 C G OBSCN Silent p.A4580A 0.09 TCGA-SU-A7E7-01 1 6680134 6680134 G C PHF13 Missense_Mutation p.G138A 0.08 tolerated(0.5) benign(0.004) TCGA-SU-A7E7-01 2 179480436 179480436 G T TTN Missense_Mutation p.A16131D 0.13 TCGA-SU-A7E7-01 3 49756929 49756929 G A AMIGO3 5'UTR 0.11 TCGA-SU-A7E7-01 4 187201675 187201675 T C F11 Missense_Mutation p.I359T 0.17 deleterious(0) probably_damaging(0.999) TCGA-SU-A7E7-01 5 124036776 124036776 A T ZNF608 Missense_Mutation p.C365S 0.10 deleterious(0.03) probably_damaging(0.916) TCGA-SU-A7E7-01 5 150908750 150908750 C T FAT2 Missense_Mutation p.V3339I 0.20 benign(0.004) TCGA-SU-A7E7-01 5 171510074 171510074 C T STK10 Missense_Mutation p.R567Q 0.09 tolerated(0.12) benign(0.325) TCGA-SU-A7E7-01 5 24487729 24487729 G A CDH10 3'UTR 0.14 TCGA-SU-A7E7-01 5 31534435 31534435 A T C5orf22 Silent p.V46V 0.18 TCGA-SU-A7E7-01 6 44216408 44216409 TT - HSP90AB1 Frame_Shift_Del p.F15Cfs*31 0.09 TCGA-SU-A7E7-01 8 61137094 61137094 A C CA8 Splice_Site p.X209_splice 0.10 TCGA-SU-A7E7-01 9 4604231 4604231 T G SPATA6L Missense_Mutation p.R318S 0.10 deleterious(0.03) benign(0) TCGA-SU-A7E7-01 X 140995225 140995225 C A MAGEC1 Missense_Mutation p.P679T 0.33 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-SU-A7E7-01 X 34960974 34960974 G A FAM47B Missense_Mutation p.R9Q 0.28 tolerated_low_confidence(0.33) benign(0.028) TCGA-SU-A7E7-01 X 91090445 91090445 T A PCDH11X 5'UTR 0.16 TCGA-TK-A8OK-01 10 1229245 1229245 G A ADARB2 Missense_Mutation p.A703V 0.32 tolerated(0.27) probably_damaging(0.961) TCGA-TK-A8OK-01 10 129350860 129350860 G A NPS Missense_Mutation p.G76D 0.26 deleterious(0) probably_damaging(1) TCGA-TK-A8OK-01 10 95557115 95557115 T C LGI1 Missense_Mutation p.I410T 0.25 deleterious(0) probably_damaging(0.93) TCGA-TK-A8OK-01 11 128680406 128680406 C T FLI1 Silent p.S294S 0.18 TCGA-TK-A8OK-01 11 132016375 132016375 C T NTM Missense_Mutation p.P123S 0.21 deleterious(0.03) probably_damaging(1) TCGA-TK-A8OK-01 11 57154994 57154994 C T PRG2 Missense_Mutation p.R208H 0.27 tolerated(0.05) benign(0.042) TCGA-TK-A8OK-01 11 68029279 68029279 G A C11orf24 Missense_Mutation p.A395V 0.28 deleterious(0.01) possibly_damaging(0.866) TCGA-TK-A8OK-01 11 92624013 92624013 G A FAT3 Missense_Mutation p.E4502K 0.27 benign(0.014) TCGA-TK-A8OK-01 12 104136330 104136330 T G STAB2 Missense_Mutation p.L2010R 0.26 tolerated(0.89) benign(0.002) TCGA-TK-A8OK-01 12 40697958 40697958 A T LRRK2 Intron 0.26 TCGA-TK-A8OK-01 12 40697959 40697959 A T LRRK2 Intron 0.28 TCGA-TK-A8OK-01 12 46245717 46245717 T G ARID2 Missense_Mutation p.C1271G 0.39 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-TK-A8OK-01 12 51442945 51442945 T C LETMD1 Missense_Mutation p.V84A 0.18 tolerated(0.25) benign(0.008) TCGA-TK-A8OK-01 14 38061334 38061334 G A FOXA1 Missense_Mutation p.R219C 0.19 deleterious(0) probably_damaging(1) TCGA-TK-A8OK-01 14 91639708 91639708 A C C14orf159 Missense_Mutation p.K178Q 0.06 tolerated(0.1) benign(0.382) TCGA-TK-A8OK-01 14 91787515 91787515 G A CCDC88C Silent p.S492S 0.23 TCGA-TK-A8OK-01 17 73728052 73728052 C T ITGB4 Silent p.L459L 0.10 TCGA-TK-A8OK-01 19 46444191 46444191 C T NOVA2 Missense_Mutation p.V137I 0.19 tolerated(0.08) unknown(0) TCGA-TK-A8OK-01 19 58437682 58437682 C T ZNF418 Missense_Mutation p.E623K 0.23 tolerated(0.13) probably_damaging(0.937) TCGA-TK-A8OK-01 19 5923895 5923895 C G RANBP3 Missense_Mutation p.D343H 0.10 deleterious(0.04) possibly_damaging(0.841) TCGA-TK-A8OK-01 1 114309020 114309020 C T RSBN1 Missense_Mutation p.R664H 0.26 deleterious(0) probably_damaging(0.996) TCGA-TK-A8OK-01 1 186024595 186024595 C T HMCN1 Silent p.S2311S 0.20 TCGA-TK-A8OK-01 1 196794779 196794779 G T CFHR1 Missense_Mutation p.W77C 0.21 deleterious(0) probably_damaging(0.999) TCGA-TK-A8OK-01 1 228444396 228444396 G T OBSCN Missense_Mutation p.V1544L 0.25 benign(0.031) TCGA-TK-A8OK-01 1 4832547 4832547 G A AJAP1 Silent p.S375S 0.38 TCGA-TK-A8OK-01 1 62257043 62257043 T C INADL Silent p.Y364Y 0.34 TCGA-TK-A8OK-01 20 33329897 33329897 C T NCOA6 Missense_Mutation p.G1388E 0.25 probably_damaging(0.925) TCGA-TK-A8OK-01 20 40127969 40127969 A G CHD6 Missense_Mutation p.I294T 0.43 deleterious(0.01) probably_damaging(0.981) TCGA-TK-A8OK-01 21 27101953 27101953 T G ATP5J Missense_Mutation p.K59N 0.27 tolerated(0.27) possibly_damaging(0.705) TCGA-TK-A8OK-01 22 23438412 23438412 G A GNAZ Missense_Mutation p.R177H 0.29 tolerated(0.1) probably_damaging(0.996) TCGA-TK-A8OK-01 22 29195090 29195090 A C XBP1 Silent p.A93A 0.22 TCGA-TK-A8OK-01 2 113958986 113958986 G A PSD4 Silent p.Q1055Q 0.29 TCGA-TK-A8OK-01 2 18112559 18112559 G A KCNS3 Missense_Mutation p.C95Y 0.26 deleterious(0.04) benign(0.376) TCGA-TK-A8OK-01 2 237172857 237172857 G A ASB18 Silent p.D44D 0.17 TCGA-TK-A8OK-01 4 109088978 109088978 A G LEF1 5'UTR 0.24 TCGA-TK-A8OK-01 4 40892409 40892409 C T APBB2 Missense_Mutation p.V501M 0.27 deleterious(0) probably_damaging(0.978) TCGA-TK-A8OK-01 5 118485601 118485602 TG - DMXL1 Frame_Shift_Del p.L1360Qfs*2 0.13 TCGA-TK-A8OK-01 5 140012472 140012472 G A CD14 Missense_Mutation p.R33C 0.14 deleterious(0.02) probably_damaging(0.939) TCGA-TK-A8OK-01 5 140187407 140187407 T C PCDHA4 Missense_Mutation p.L212P 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-TK-A8OK-01 5 140811043 140811043 A G PCDHGA12 Silent p.A239A 0.24 TCGA-TK-A8OK-01 6 131908778 131908778 A G MED23 3'UTR 0.23 TCGA-TK-A8OK-01 6 150211114 150211114 T A RAET1E Missense_Mutation p.S85C 0.11 deleterious(0) probably_damaging(0.932) TCGA-TK-A8OK-01 6 27782270 27782270 G A HIST1H2AJ Silent p.H83H 0.20 TCGA-TK-A8OK-01 6 43403887 43403887 G C ABCC10 Missense_Mutation p.E593Q 0.27 tolerated(0.23) benign(0.147) TCGA-TK-A8OK-01 6 51935833 51935833 A G PKHD1 Missense_Mutation p.L213P 0.21 deleterious(0) possibly_damaging(0.682) TCGA-TK-A8OK-01 6 64422424 64422424 A G PHF3 Missense_Mutation p.N1647S 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-TK-A8OK-01 6 74351528 74351537 CATTTTCCCC - SLC17A5 Frame_Shift_Del p.G135Cfs*2 0.18 TCGA-TK-A8OK-01 7 48550725 48550725 G A ABCA13 Missense_Mutation p.A4524T 0.21 possibly_damaging(0.821) TCGA-TK-A8OK-01 7 5348869 5348869 C T TNRC18 Missense_Mutation p.R2840H 0.09 unknown(0) TCGA-TK-A8OK-01 8 144810218 144810218 G A FAM83H Silent p.G471G 0.38 TCGA-TK-A8OK-01 8 145049507 145049507 C T PARP10 3'Flank 0.08 TCGA-TK-A8OK-01 9 97062646 97062646 G A ZNF169 Missense_Mutation p.R269H 0.21 tolerated(0.16) possibly_damaging(0.519) TCGA-TP-A8TT-01 10 13336427 13336427 C T PHYH Splice_Site p.X138_splice 0.25 TCGA-TP-A8TT-01 11 119290858 119290858 G A THY1 Silent p.S92S 0.24 TCGA-TP-A8TT-01 11 18195549 18195549 T C MRGPRX4 Missense_Mutation p.L249S 0.32 tolerated(0.33) benign(0.056) TCGA-TP-A8TT-01 12 53512168 53512168 C T SOAT2 Silent p.Y271Y 0.21 TCGA-TP-A8TT-01 12 75875623 75875623 C G GLIPR1 Missense_Mutation p.P62A 0.18 tolerated(0.26) benign(0.012) TCGA-TP-A8TT-01 14 22564709 22564710 - T TRDV1 Frame_Shift_Ins p.W56Lfs*19 0.19 TCGA-TP-A8TT-01 14 23235889 23235889 A T OXA1L Missense_Mutation p.K53N 0.28 tolerated_low_confidence(0.63) benign(0) TCGA-TP-A8TT-01 14 74825278 74825278 G T VRTN Missense_Mutation p.D598Y 0.27 tolerated(0.11) benign(0.029) TCGA-TP-A8TT-01 15 34355863 34355863 C T CHRM5 Silent p.P315P 0.20 TCGA-TP-A8TT-01 15 63569916 63569916 A T APH1B Missense_Mutation p.I32F 0.36 deleterious(0.02) possibly_damaging(0.673) TCGA-TP-A8TT-01 16 8949166 8949169 ACAT - CARHSP1 Frame_Shift_Del p.Y99Sfs*127 0.21 TCGA-TP-A8TT-01 17 11827215 11827215 C T DNAH9 Missense_Mutation p.A3945V 0.23 benign(0.066) TCGA-TP-A8TT-01 17 1486509 1486509 G C SLC43A2 Missense_Mutation p.L447V 0.27 deleterious(0) possibly_damaging(0.881) TCGA-TP-A8TT-01 17 34072229 34072229 G A GAS2L2 Missense_Mutation p.R763W 0.28 deleterious(0) probably_damaging(0.998) TCGA-TP-A8TT-01 17 38645123 38645123 G A TNS4 Missense_Mutation p.R180C 0.22 deleterious(0.03) benign(0.01) TCGA-TP-A8TT-01 17 7984326 7984326 C T AC129492.6 3'UTR 0.11 TCGA-TP-A8TT-01 18 29046692 29046692 C T DSG3 Silent p.A537A 0.21 TCGA-TP-A8TT-01 18 43438030 43438030 G A EPG5 Silent p.S2410S 0.12 TCGA-TP-A8TT-01 19 11512789 11512789 C T RGL3 Missense_Mutation p.R461H 0.38 tolerated(0.12) benign(0.018) TCGA-TP-A8TT-01 19 16973254 16973254 G A SIN3B Missense_Mutation p.G384R 0.29 deleterious(0.02) possibly_damaging(0.455) TCGA-TP-A8TT-01 19 52568806 52568806 G A ZNF841 Missense_Mutation p.R777C 0.09 tolerated(0.08) possibly_damaging(0.77) TCGA-TP-A8TT-01 1 155837993 155837993 G A SYT11 Missense_Mutation p.R91H 0.10 tolerated(0.09) benign(0.004) TCGA-TP-A8TT-01 22 29704083 29704083 G A GAS2L1 5'UTR 0.36 TCGA-TP-A8TT-01 22 42605932 42605932 C T TCF20 Missense_Mutation p.D1794N 0.32 possibly_damaging(0.792) TCGA-TP-A8TT-01 2 185803618 185803618 T G ZNF804A Silent p.A1165A 0.27 TCGA-TP-A8TT-01 2 196581641 196581641 C T SLC39A10 Silent p.S659S 0.19 TCGA-TP-A8TT-01 3 183521772 183521772 A C YEATS2 Intron 0.26 TCGA-TP-A8TT-01 4 134084436 134084436 G T PCDH10 Missense_Mutation p.L1034F 0.33 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-TP-A8TT-01 7 12270040 12270040 T C TMEM106B Missense_Mutation p.I203T 0.20 deleterious(0.01) possibly_damaging(0.583) TCGA-TP-A8TT-01 7 148873589 148873589 T C ZNF398 Missense_Mutation p.S231P 0.07 tolerated(0.13) probably_damaging(0.997) TCGA-TP-A8TT-01 8 30210703 30210703 T G TUBBP1 RNA 0.14 TCGA-TP-A8TT-01 9 37304308 37304308 C T ZCCHC7 Nonsense_Mutation p.R260* 0.20 TCGA-TP-A8TT-01 X 73745591 73745591 T C SLC16A2 Missense_Mutation p.Y345H 0.45 tolerated(1) benign(0.074) TCGA-TP-A8TT-01 X 85213927 85213927 C A CHM Missense_Mutation p.R253L 0.64 deleterious(0) benign(0.34) TCGA-TP-A8TV-01 10 5966434 5966434 G T FBXO18 Missense_Mutation p.R904S 0.39 deleterious(0) possibly_damaging(0.852) TCGA-TP-A8TV-01 10 90672938 90672938 G A STAMBPL1 Missense_Mutation p.M167I 0.14 tolerated(0.15) benign(0.002) TCGA-TP-A8TV-01 10 90672939 90672939 C G STAMBPL1 Missense_Mutation p.R168G 0.14 deleterious(0) probably_damaging(0.998) TCGA-TP-A8TV-01 11 107535808 107535808 T A ELMOD1 Missense_Mutation p.M297K 0.15 deleterious(0) probably_damaging(0.993) TCGA-TP-A8TV-01 11 33129494 33129494 T A CSTF3 Missense_Mutation p.Y104F 0.37 deleterious(0) probably_damaging(0.981) TCGA-TP-A8TV-01 11 55652923 55652923 C A TRIM51 Missense_Mutation p.Q7K 0.32 tolerated(0.13) benign(0.026) TCGA-TP-A8TV-01 11 57076312 57076312 G A TNKS1BP1 Silent p.A1291A 0.32 TCGA-TP-A8TV-01 11 7674452 7674452 C T PPFIBP2 3'UTR 0.17 TCGA-TP-A8TV-01 12 52981595 52981595 C T KRT72 Missense_Mutation p.R377Q 0.09 tolerated(0.07) benign(0.161) TCGA-TP-A8TV-01 13 20398825 20398825 T C ZMYM5 Missense_Mutation p.N601S 0.19 tolerated_low_confidence(0.28) probably_damaging(0.994) TCGA-TP-A8TV-01 14 45639819 45639819 A T FANCM Missense_Mutation p.D677V 0.10 deleterious(0) possibly_damaging(0.477) TCGA-TP-A8TV-01 14 70420250 70420250 G A SMOC1 Splice_Site p.X126_splice 0.46 TCGA-TP-A8TV-01 15 20170312 20170312 C A IGHV1OR15-9 Missense_Mutation p.A15S 0.46 tolerated(0.1) benign(0.009) TCGA-TP-A8TV-01 15 40259951 40259951 C T EIF2AK4 Missense_Mutation p.T475M 0.32 tolerated(0.24) benign(0.164) TCGA-TP-A8TV-01 16 2049812 2049812 C A ZNF598 Missense_Mutation p.A580S 0.35 benign(0.055) TCGA-TP-A8TV-01 16 72134479 72134479 A C DHX38 Missense_Mutation p.I421L 0.28 tolerated(0.1) benign(0.023) TCGA-TP-A8TV-01 16 81740629 81740630 TC - CMIP Frame_Shift_Del p.C738Qfs*12 0.15 TCGA-TP-A8TV-01 16 89294750 89294750 C T ZNF778 Missense_Mutation p.S657F 0.30 tolerated(0.29) probably_damaging(0.979) TCGA-TP-A8TV-01 17 38859719 38859719 C A KRT24 Missense_Mutation p.G76V 0.07 deleterious(0.05) unknown(0) TCGA-TP-A8TV-01 17 38907296 38907296 G A KRT25 Silent p.V289V 0.06 TCGA-TP-A8TV-01 17 42941093 42941093 T C EFTUD2 Missense_Mutation p.K448R 0.10 tolerated(0.09) benign(0.049) TCGA-TP-A8TV-01 17 47696688 47696688 T C SPOP Missense_Mutation p.Y87C 0.49 tolerated(0.11) probably_damaging(1) TCGA-TP-A8TV-01 19 10090686 10090686 C T COL5A3 Missense_Mutation p.G881E 0.09 unknown(0) TCGA-TP-A8TV-01 19 1235783 1235783 G A C19orf26 Silent p.L80L 0.15 TCGA-TP-A8TV-01 19 17608156 17608156 G A SLC27A1 Silent p.G363G 0.50 TCGA-TP-A8TV-01 19 33623274 33623274 C T WDR88 Missense_Mutation p.P67S 0.10 tolerated(0.84) benign(0) TCGA-TP-A8TV-01 19 52663765 52663765 A C ZNF836 Missense_Mutation p.L32W 0.11 deleterious(0) probably_damaging(0.996) TCGA-TP-A8TV-01 19 6697481 6697481 G A C3 Silent p.P890P 0.17 TCGA-TP-A8TV-01 1 110883036 110883036 G - RBM15 Frame_Shift_Del p.E337Rfs*45 0.13 TCGA-TP-A8TV-01 1 201185718 201185718 C T IGFN1 Silent p.G3144G 0.21 TCGA-TP-A8TV-01 1 85648608 85648608 C T SYDE2 Missense_Mutation p.D573N 0.35 tolerated(0.23) benign(0.002) TCGA-TP-A8TV-01 20 37581078 37581078 A G FAM83D Missense_Mutation p.N588S 0.42 tolerated(0.35) benign(0.019) TCGA-TP-A8TV-01 2 122520661 122520661 G C TSN Splice_Site p.X151_splice 0.20 TCGA-TP-A8TV-01 2 158397662 158397662 C T ACVR1C Missense_Mutation p.A389T 0.16 tolerated(0.23) possibly_damaging(0.638) TCGA-TP-A8TV-01 2 170349443 170349443 A G BBS5 Missense_Mutation p.N149S 0.14 tolerated(0.18) probably_damaging(0.973) TCGA-TP-A8TV-01 2 47606938 47606938 A C EPCAM Missense_Mutation p.K230Q 0.43 tolerated(0.4) benign(0.005) TCGA-TP-A8TV-01 3 168802820 168802820 C T MECOM Missense_Mutation p.M1076I 0.34 deleterious(0) benign(0.376) TCGA-TP-A8TV-01 3 48452351 48452351 T G PLXNB1 Missense_Mutation p.K1781T 0.56 deleterious(0) probably_damaging(1) TCGA-TP-A8TV-01 3 52840313 52840313 C T ITIH3 Silent p.D649D 0.14 TCGA-TP-A8TV-01 4 122250475 122250475 C T QRFPR Silent p.G430G 0.25 TCGA-TP-A8TV-01 5 130766835 130766835 G T RAPGEF6 Silent p.T1402T 0.10 TCGA-TP-A8TV-01 5 140054664 140054664 G C HARS Missense_Mutation p.Q417E 0.45 tolerated(0.12) probably_damaging(0.928) TCGA-TP-A8TV-01 5 57913607 57913607 C T RAB3C Silent p.S54S 0.22 TCGA-TP-A8TV-01 6 139262626 139262626 C A REPS1 Missense_Mutation p.W327C 0.32 deleterious(0) probably_damaging(1) TCGA-TP-A8TV-01 6 147885728 147885728 C A SAMD5 3'UTR 0.64 TCGA-TP-A8TV-01 7 42958761 42958761 G A PSMA2 Intron 0.16 TCGA-TP-A8TV-01 7 79818543 79818543 G A GNAI1 Missense_Mutation p.R100Q 0.11 tolerated(0.06) possibly_damaging(0.602) TCGA-TP-A8TV-01 8 110495238 110495238 T C PKHD1L1 Silent p.L3160L 0.27 TCGA-TP-A8TV-01 8 128428375 128428375 C T POU5F1B Silent p.G88G 0.24 TCGA-TP-A8TV-01 9 136198945 136198945 G A SURF6 Silent p.I282I 0.11 TCGA-V1-A8MF-01 10 108367021 108367021 G A SORCS1 Missense_Mutation p.A1023V 0.28 tolerated(0.91) benign(0.33) TCGA-V1-A8MF-01 10 70231685 70231685 G A DNA2 Silent p.S65S 0.20 TCGA-V1-A8MF-01 11 114450889 114450889 C A NXPE4 Missense_Mutation p.R355L 0.26 deleterious(0.05) possibly_damaging(0.81) TCGA-V1-A8MF-01 11 119031791 119031791 G A ABCG4 Missense_Mutation p.R639H 0.26 deleterious(0) probably_damaging(0.953) TCGA-V1-A8MF-01 11 4870309 4870309 G A OR51S1 Missense_Mutation p.L44F 0.15 tolerated(0.08) benign(0.027) TCGA-V1-A8MF-01 11 4928816 4928816 C T OR51A7 Silent p.L73L 0.34 TCGA-V1-A8MF-01 11 5566336 5566336 A T OR52H1 Missense_Mutation p.Y140N 0.35 deleterious(0) probably_damaging(0.999) TCGA-V1-A8MF-01 11 63999914 63999914 C T DNAJC4 Missense_Mutation p.R65W 0.12 deleterious(0) probably_damaging(0.999) TCGA-V1-A8MF-01 11 92087934 92087934 G A FAT3 Missense_Mutation p.V886I 0.24 benign(0.03) TCGA-V1-A8MF-01 14 74989505 74989505 C T LTBP2 Missense_Mutation p.A883T 0.24 tolerated(0.78) benign(0.403) TCGA-V1-A8MF-01 17 41369926 41369926 C T TMEM106A 3'UTR 0.21 TCGA-V1-A8MF-01 19 51919938 51919938 C T SIGLEC10 Missense_Mutation p.V230I 0.17 tolerated(0.23) benign(0.036) TCGA-V1-A8MF-01 1 157805768 157805768 A T CD5L Nonsense_Mutation p.L78* 0.11 TCGA-V1-A8MF-01 1 162381782 162381782 G A SH2D1B Missense_Mutation p.R9C 0.26 tolerated(0.21) benign(0.004) TCGA-V1-A8MF-01 1 25679432 25679432 A G TMEM50A Missense_Mutation p.M112V 0.35 tolerated(0.33) benign(0.007) TCGA-V1-A8MF-01 1 43392795 43392795 C T SLC2A1 Missense_Mutation p.G466S 0.33 tolerated(0.7) benign(0.026) TCGA-V1-A8MF-01 22 32753956 32753956 A G RFPL3 5'UTR 0.22 TCGA-V1-A8MF-01 22 50684778 50684779 - C HDAC10 Frame_Shift_Ins p.K534Qfs*40 0.24 TCGA-V1-A8MF-01 2 141458086 141458086 C A LRP1B Missense_Mutation p.D2178Y 0.25 possibly_damaging(0.861) TCGA-V1-A8MF-01 2 169758016 169758016 T C G6PC2 Missense_Mutation p.W59R 0.39 deleterious(0.01) benign(0.247) TCGA-V1-A8MF-01 2 227973563 227973563 G A COL4A4 Missense_Mutation p.R227C 0.27 probably_damaging(0.938) TCGA-V1-A8MF-01 2 238683013 238683013 G C LRRFIP1 Missense_Mutation p.E574Q 0.17 deleterious(0.02) probably_damaging(0.917) TCGA-V1-A8MF-01 2 60688671 60688671 G A BCL11A Missense_Mutation p.A459V 0.42 deleterious(0.01) possibly_damaging(0.483) TCGA-V1-A8MF-01 2 89100664 89100664 C G ANKRD36BP2 RNA 0.21 TCGA-V1-A8MF-01 3 38155877 38155877 G A DLEC1 Silent p.A1237A 0.31 TCGA-V1-A8MF-01 4 25393993 25393993 G T ANAPC4 Nonsense_Mutation p.E247* 0.19 TCGA-V1-A8MF-01 5 140242936 140242936 C T AC005609.1 Missense_Mutation p.V14I 0.23 tolerated_low_confidence(0.15) benign(0.208) TCGA-V1-A8MF-01 5 140308857 140308857 T A PCDHAC1 Missense_Mutation p.S794T 0.27 tolerated(0.22) benign(0.044) TCGA-V1-A8MF-01 5 63890653 63890653 C T RGS7BP Nonsense_Mutation p.Q194* 0.28 TCGA-V1-A8MF-01 5 68902931 68902931 C T RP11-848G14.2 RNA 0.09 TCGA-V1-A8MF-01 6 152751250 152751250 A T SYNE1 Missense_Mutation p.H1595Q 0.35 possibly_damaging(0.642) TCGA-V1-A8MF-01 6 31937454 31937454 C T SKIV2L Missense_Mutation p.R1235W 0.06 deleterious(0) probably_damaging(1) TCGA-V1-A8MF-01 7 143807097 143807097 C T OR2A2 Missense_Mutation p.T141M 0.19 tolerated(0.08) benign(0.134) TCGA-V1-A8MF-01 9 113208175 113208175 T C SVEP1 Missense_Mutation p.I1469V 0.26 benign(0.173) TCGA-V1-A8MF-01 9 27948877 27948877 G T LINGO2 Missense_Mutation p.P598H 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-V1-A8MG-01 10 71139678 71139678 C T HK1 Silent p.S368S 0.14 TCGA-V1-A8MG-01 11 17793787 17793787 G A KCNC1 Silent p.T382T 0.07 TCGA-V1-A8MG-01 11 60704344 60704344 C T TMEM132A Missense_Mutation p.R1014C 0.10 deleterious(0.03) possibly_damaging(0.907) TCGA-V1-A8MG-01 11 95571268 95571268 C G MTMR2 Missense_Mutation p.R528T 0.10 deleterious(0) probably_damaging(0.939) TCGA-V1-A8MG-01 13 108518235 108518235 C T FAM155A Missense_Mutation p.G237E 0.06 deleterious(0.04) probably_damaging(1) TCGA-V1-A8MG-01 14 73441529 73441529 G A ZFYVE1 Missense_Mutation p.R649W 0.06 deleterious(0) probably_damaging(0.999) TCGA-V1-A8MG-01 16 74385943 74385943 T A RP11-252A24.2 RNA 0.14 TCGA-V1-A8MG-01 17 18053797 18053797 G A MYO15A Missense_Mutation p.G2423S 0.10 unknown(0) TCGA-V1-A8MG-01 19 3964647 3964647 G T DAPK3 Silent p.I135I 0.14 TCGA-V1-A8MG-01 19 8931882 8931882 T C ZNF558 Missense_Mutation p.E74G 0.12 deleterious(0) probably_damaging(0.998) TCGA-V1-A8MG-01 1 109793213 109793213 G A CELSR2 Missense_Mutation p.R171Q 0.15 tolerated(0.3) benign(0.047) TCGA-V1-A8MG-01 1 109801533 109801533 C T CELSR2 Missense_Mutation p.R1264W 0.15 deleterious(0) probably_damaging(0.987) TCGA-V1-A8MG-01 1 23376958 23376958 T C KDM1A Missense_Mutation p.I219T 0.09 deleterious(0) probably_damaging(0.994) TCGA-V1-A8MG-01 1 41976593 41976593 C T HIVEP3 Silent p.S2250S 0.14 TCGA-V1-A8MG-01 1 91977213 91977213 T C CDC7 Missense_Mutation p.I132T 0.05 deleterious(0) probably_damaging(1) TCGA-V1-A8MG-01 2 131103658 131103658 C T IMP4 Missense_Mutation p.A221V 0.23 tolerated(0.24) benign(0.034) TCGA-V1-A8MG-01 2 21249774 21249774 A G APOB Silent p.F710F 0.17 TCGA-V1-A8MG-01 3 151164494 151164494 G A IGSF10 Missense_Mutation p.A1092V 0.11 tolerated(0.11) benign(0.01) TCGA-V1-A8MG-01 4 121702371 121702371 C T PRDM5 Missense_Mutation p.R457K 0.20 tolerated(0.15) benign(0.217) TCGA-V1-A8MG-01 5 156590508 156590508 C G FAM71B Silent p.G256G 0.14 TCGA-V1-A8MG-01 5 41201771 41201771 C G C6 Missense_Mutation p.Q63H 0.05 deleterious(0.02) benign(0.06) TCGA-V1-A8MG-01 5 89981695 89981695 C T GPR98 Missense_Mutation p.P2125S 0.16 probably_damaging(0.992) TCGA-V1-A8MG-01 6 127471649 127471649 G A RSPO3 Missense_Mutation p.G123E 0.07 deleterious(0) probably_damaging(1) TCGA-V1-A8MG-01 8 122626638 122626638 G A HAS2 Missense_Mutation p.T457I 0.04 deleterious(0) probably_damaging(1) TCGA-V1-A8MG-01 8 87126109 87126109 C T ATP6V0D2 Missense_Mutation p.T101M 0.08 deleterious(0.01) probably_damaging(0.909) TCGA-V1-A8MG-01 9 107547843 107547843 C T ABCA1 Missense_Mutation p.G2160E 0.04 tolerated(1) benign(0.001) TCGA-V1-A8MG-01 9 107547844 107547844 C T ABCA1 Missense_Mutation p.G2160R 0.04 tolerated(0.39) benign(0.042) TCGA-V1-A8MG-01 9 32541842 32541842 T C TOPORS Missense_Mutation p.K894R 0.16 tolerated(0.9) unknown(0) TCGA-V1-A8MG-01 X 12937492 12937492 A - TLR8 Frame_Shift_Del p.N112Mfs*3 0.23 TCGA-V1-A8MG-01 X 215818 215818 C T PLCXD1 Missense_Mutation p.A263V 0.19 tolerated(0.59) benign(0.004) TCGA-V1-A8MJ-01 11 55872975 55872975 T C OR8H2 Missense_Mutation p.F153L 0.12 tolerated(0.24) benign(0.168) TCGA-V1-A8MJ-01 11 56380683 56380683 G A OR5M1 Missense_Mutation p.T99I 0.08 tolerated(0.53) benign(0.005) TCGA-V1-A8MJ-01 12 113307699 113307699 C A RPH3A Silent p.G217G 0.15 TCGA-V1-A8MJ-01 16 20974749 20974749 G A DNAH3 Missense_Mutation p.P3486L 0.08 deleterious(0.01) benign(0.169) TCGA-V1-A8MJ-01 16 31393167 31393167 C A ITGAX Missense_Mutation p.A1144E 0.06 tolerated(0.07) possibly_damaging(0.709) TCGA-V1-A8MJ-01 17 19451300 19451300 G A SLC47A1 Silent p.T103T 0.15 TCGA-V1-A8MJ-01 17 7578389 7578389 G A TP53 Missense_Mutation p.R181C 0.14 tolerated(0.14) benign(0.381) TCGA-V1-A8MJ-01 19 39522548 39522548 C T FBXO27 Missense_Mutation p.R107H 0.10 deleterious(0.04) possibly_damaging(0.778) TCGA-V1-A8MJ-01 19 54314477 54314477 G A NLRP12 Missense_Mutation p.R146C 0.15 tolerated(0.06) probably_damaging(1) TCGA-V1-A8MJ-01 19 9059816 9059816 T C MUC16 Missense_Mutation p.I9210M 0.06 unknown(0) TCGA-V1-A8MJ-01 1 179064325 179064325 C T TOR3A Missense_Mutation p.S389F 0.06 tolerated(0.1) probably_damaging(0.971) TCGA-V1-A8MJ-01 1 22170669 22170669 C T HSPG2 Missense_Mutation p.R2863H 0.14 benign(0.178) TCGA-V1-A8MJ-01 22 18020457 18020457 A G CECR2 Missense_Mutation p.T597A 0.09 tolerated(0.29) benign(0.001) TCGA-V1-A8MJ-01 2 174820690 174820690 C A SP3 Missense_Mutation p.V184F 0.15 deleterious(0.02) probably_damaging(0.969) TCGA-V1-A8MJ-01 2 179403722 179403722 C T TTN Silent p.L32980L 0.18 TCGA-V1-A8MJ-01 4 101344519 101344519 G C EMCN Missense_Mutation p.T153R 0.10 tolerated(0.08) probably_damaging(0.992) TCGA-V1-A8MJ-01 4 126411435 126411435 G C FAT4 Silent p.G4486G 0.12 TCGA-V1-A8MJ-01 4 37591911 37591911 G C C4orf19 Missense_Mutation p.W78C 0.19 tolerated(0.07) possibly_damaging(0.871) TCGA-V1-A8MJ-01 6 41710082 41710082 C T PGC Missense_Mutation p.G198D 0.05 deleterious(0.05) benign(0.431) TCGA-V1-A8MJ-01 8 118169934 118169934 C T SLC30A8 Silent p.I141I 0.11 TCGA-V1-A8MK-01 17 21731451 21731451 G A UBBP4 Missense_Mutation p.E176K 0.06 tolerated(0.18) benign(0.064) TCGA-V1-A8MK-01 17 37343159 37343159 G C CACNB1 Missense_Mutation p.I146M 0.06 deleterious(0) probably_damaging(0.998) TCGA-V1-A8MK-01 17 76212096 76212096 C T BIRC5 Nonsense_Mutation p.R91* 0.10 TCGA-V1-A8MK-01 19 13059566 13059566 T C RAD23A Missense_Mutation p.V180A 0.03 deleterious(0) probably_damaging(0.987) TCGA-V1-A8MK-01 1 157509002 157509002 C T FCRL5 Missense_Mutation p.A426T 0.11 tolerated(0.49) benign(0.07) TCGA-V1-A8MK-01 3 147113841 147113841 G C ZIC4 Missense_Mutation p.H212Q 0.05 deleterious(0) probably_damaging(0.989) TCGA-V1-A8MK-01 6 10894418 10894418 G A SYCP2L Missense_Mutation p.R106Q 0.05 tolerated(1) benign(0.001) TCGA-V1-A8MK-01 6 7578728 7578728 T C DSP Missense_Mutation p.L1006P 0.06 probably_damaging(0.999) TCGA-V1-A8MK-01 X 34149302 34149302 G A FAM47A Missense_Mutation p.A365V 0.10 deleterious(0.03) benign(0.001) TCGA-V1-A8MK-01 X 70330027 70330027 A G IL2RG Silent p.T191T 0.09 TCGA-V1-A8ML-01 10 51584630 51584630 C G NCOA4 Silent p.A259A 0.08 TCGA-V1-A8ML-01 10 51584701 51584701 C G NCOA4 Nonsense_Mutation p.S283* 0.09 TCGA-V1-A8ML-01 10 61011334 61011334 C T FAM13C Splice_Site p.X545_splice 0.04 TCGA-V1-A8ML-01 11 8159870 8159870 C T RIC3 Missense_Mutation p.E126K 0.18 tolerated(0.69) benign(0.287) TCGA-V1-A8ML-01 12 101436230 101436230 G T ANO4 Missense_Mutation p.D345Y 0.13 deleterious(0.01) possibly_damaging(0.546) TCGA-V1-A8ML-01 12 54914981 54914981 G A NCKAP1L Missense_Mutation p.V613I 0.06 tolerated(1) benign(0.005) TCGA-V1-A8ML-01 14 59730213 59730213 A C DAAM1 Missense_Mutation p.R6S 0.20 deleterious(0) unknown(0) TCGA-V1-A8ML-01 17 16722880 16722881 AG - AC022596.6 RNA 0.24 TCGA-V1-A8ML-01 1 155349888 155349889 - T ASH1L Frame_Shift_Ins p.R2042Efs*3 0.11 TCGA-V1-A8ML-01 1 38261411 38261411 G A MANEAL Missense_Mutation p.V185I 0.20 deleterious(0.01) benign(0.332) TCGA-V1-A8ML-01 2 27445189 27445189 A G CAD Silent p.P160P 0.17 TCGA-V1-A8ML-01 4 48567706 48567706 G A FRYL Missense_Mutation p.H1058Y 0.10 tolerated(0.05) benign(0.222) TCGA-V1-A8ML-01 6 151671704 151671704 C T AKAP12 Silent p.D726D 0.16 TCGA-V1-A8ML-01 X 44938585 44938585 G T KDM6A Nonsense_Mutation p.E1045* 0.34 TCGA-V1-A8ML-01 X 64722774 64722774 G A ZC3H12B Silent p.P732P 0.15 TCGA-V1-A8MM-01 11 114316698 114316698 T C REXO2 Intron 0.34 TCGA-V1-A8MM-01 11 123625199 123625199 A C OR6X1 Missense_Mutation p.F10V 0.47 deleterious(0) probably_damaging(1) TCGA-V1-A8MM-01 11 128786546 128786546 C T KCNJ5 Silent p.L394L 0.17 TCGA-V1-A8MM-01 12 49447049 49447050 GG - KMT2D Nonsense_Mutation p.Y298* 0.27 TCGA-V1-A8MM-01 14 38061233 38061241 GTTGCCGGA - FOXA1 In_Frame_Del p.S250_N252del 0.38 TCGA-V1-A8MM-01 15 102303137 102303137 C G DNM1P47 RNA 0.15 TCGA-V1-A8MM-01 17 10397685 10397685 G C MYH1 Missense_Mutation p.Q1885E 0.36 deleterious(0.02) possibly_damaging(0.484) TCGA-V1-A8MM-01 19 10906045 10906045 C T DNM2 Intron 0.42 TCGA-V1-A8MM-01 19 13873213 13873213 G A CCDC130 Missense_Mutation p.R225H 0.07 deleterious(0.01) possibly_damaging(0.896) TCGA-V1-A8MM-01 19 3551171 3551171 G A MFSD12 Missense_Mutation p.S107F 0.43 probably_damaging(0.997) TCGA-V1-A8MM-01 19 3905474 3905474 G A ATCAY Missense_Mutation p.R60K 0.22 tolerated(0.41) possibly_damaging(0.881) TCGA-V1-A8MM-01 1 144815950 144815950 G C NBPF9 Missense_Mutation p.D182H 0.12 deleterious(0.02) possibly_damaging(0.642) TCGA-V1-A8MM-01 1 158651379 158651379 C A SPTA1 Missense_Mutation p.A157S 0.44 tolerated(0.07) benign(0.003) TCGA-V1-A8MM-01 20 30064255 30064255 C T REM1 Missense_Mutation p.L3F 0.06 deleterious(0) probably_damaging(0.994) TCGA-V1-A8MM-01 2 107460368 107460368 G A ST6GAL2 Silent p.L22L 0.30 TCGA-V1-A8MM-01 3 126260911 126260911 C T CHST13 Silent p.F172F 0.31 TCGA-V1-A8MM-01 4 120527915 120527915 C T PDE5A Silent p.V230V 0.09 TCGA-V1-A8MM-01 4 47938975 47938975 G A CNGA1 Silent p.I581I 0.36 TCGA-V1-A8MM-01 5 112175761 112175762 TT - APC Frame_Shift_Del p.F1491Cfs*22 0.10 TCGA-V1-A8MM-01 5 140209185 140209185 G T PCDHA6 Silent p.A503A 0.42 TCGA-V1-A8MM-01 6 30080303 30080303 T C TRIM31 Missense_Mutation p.T94A 0.44 tolerated(0.17) benign(0.003) TCGA-V1-A8MM-01 7 31378732 31378732 C - NEUROD6 Frame_Shift_Del p.A51Pfs*67 0.24 TCGA-V1-A8MM-01 8 129162395 129162395 C T MIR1208 RNA 0.51 TCGA-V1-A8MM-01 8 82355665 82355665 C T PMP2 Missense_Mutation p.V123M 0.65 deleterious(0) possibly_damaging(0.861) TCGA-V1-A8MM-01 9 121441 121441 C A CBWD1 3'UTR 0.29 TCGA-V1-A8MM-01 9 90219898 90219898 G A DAPK1 Missense_Mutation p.R31H 0.46 tolerated(0.13) possibly_damaging(0.585) TCGA-V1-A8MM-01 X 151303817 151303817 G A MAGEA10 Silent p.S92S 0.11 TCGA-V1-A8MU-01 10 123658410 123658410 G C ATE1 Silent p.V296V 0.22 TCGA-V1-A8MU-01 10 18292034 18292034 C T SLC39A12 Intron 0.21 TCGA-V1-A8MU-01 10 27702370 27702370 G A PTCHD3 Silent p.Y270Y 0.24 TCGA-V1-A8MU-01 11 1075772 1075772 C G MUC2 Missense_Mutation p.D66E 0.41 probably_damaging(1) TCGA-V1-A8MU-01 11 111784196 111784196 A G HSPB2 Silent p.T42T 0.21 TCGA-V1-A8MU-01 11 118344075 118344076 - A KMT2A Frame_Shift_Ins p.R736Kfs*7 0.18 TCGA-V1-A8MU-01 11 1273662 1273662 G A MUC5B Missense_Mutation p.A4985T 0.19 unknown(0) TCGA-V1-A8MU-01 11 2170598 2170598 T C INS-IGF2 Intron 0.15 TCGA-V1-A8MU-01 11 75442268 75442268 C A MOGAT2 Missense_Mutation p.N314K 0.27 tolerated(1) benign(0.008) TCGA-V1-A8MU-01 12 78400952 78400952 G A NAV3 Missense_Mutation p.S545N 0.08 tolerated(0.55) benign(0.002) TCGA-V1-A8MU-01 12 99007629 99007635 AGCTTAG - IKBIP Frame_Shift_Del p.L261* 0.28 TCGA-V1-A8MU-01 14 20344905 20344905 T G OR4K2 Missense_Mutation p.V160G 0.17 deleterious(0) probably_damaging(0.935) TCGA-V1-A8MU-01 16 28549338 28549339 TC - NUPR1 3'UTR 0.16 TCGA-V1-A8MU-01 16 31382413 31382413 G A ITGAX Silent p.A573A 0.21 TCGA-V1-A8MU-01 16 67645414 67645414 G C CTCF Missense_Mutation p.D227H 0.24 tolerated(0.06) benign(0.272) TCGA-V1-A8MU-01 17 18138412 18138413 - C LLGL1 Frame_Shift_Ins p.Q359Pfs*95 0.30 TCGA-V1-A8MU-01 17 76482396 76482396 G A DNAH17 Silent p.T2323T 0.12 TCGA-V1-A8MU-01 18 77733621 77733621 T A TXNL4A 3'UTR 0.21 TCGA-V1-A8MU-01 19 31038939 31038939 C T ZNF536 Missense_Mutation p.R805W 0.19 deleterious(0) possibly_damaging(0.855) TCGA-V1-A8MU-01 1 151011474 151011474 G A BNIPL Silent p.L135L 0.14 TCGA-V1-A8MU-01 1 161203129 161203129 C A NR1I3 Splice_Site p.X80_splice 0.27 TCGA-V1-A8MU-01 1 204937483 204937483 C T NFASC Silent p.S271S 0.24 TCGA-V1-A8MU-01 1 227935845 227935845 G A SNAP47 Silent p.T181T 0.19 TCGA-V1-A8MU-01 20 18496338 18496338 C T SEC23B Silent p.A108A 0.18 TCGA-V1-A8MU-01 20 48098528 48098528 C T KCNB1 Missense_Mutation p.D164N 0.18 tolerated(0.11) possibly_damaging(0.866) TCGA-V1-A8MU-01 22 42905063 42905063 G A RRP7A 3'Flank 0.19 TCGA-V1-A8MU-01 2 47278891 47278891 G A TTC7A Missense_Mutation p.R675Q 0.14 tolerated(0.39) benign(0.001) TCGA-V1-A8MU-01 3 140397286 140397286 A G TRIM42 Missense_Mutation p.N72S 0.24 tolerated(0.11) possibly_damaging(0.622) TCGA-V1-A8MU-01 3 184922509 184922509 G - EHHADH Frame_Shift_Del p.P202Qfs*17 0.16 TCGA-V1-A8MU-01 3 93769715 93769715 C G ARL13B Missense_Mutation p.L397V 0.20 deleterious(0.01) benign(0.2) TCGA-V1-A8MU-01 4 44449755 44449755 C T KCTD8 Silent p.P262P 0.17 TCGA-V1-A8MU-01 5 128994429 128994429 A G ADAMTS19 Silent p.A802A 0.24 TCGA-V1-A8MU-01 5 140215501 140215501 C T PCDHA7 Silent p.H511H 0.26 TCGA-V1-A8MU-01 5 140222414 140222414 C A PCDHA8 Nonsense_Mutation p.S503* 0.23 TCGA-V1-A8MU-01 5 140554104 140554104 A G PCDHB7 Missense_Mutation p.Y563C 0.28 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-V1-A8MU-01 6 29342301 29342301 C A OR12D3 Missense_Mutation p.G255V 0.07 tolerated(0.38) benign(0.01) TCGA-V1-A8MU-01 6 42832986 42832986 C G GLTSCR1L Missense_Mutation p.I1014M 0.27 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-V1-A8MU-01 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.21 deleterious(0) benign(0.411) TCGA-V1-A8WL-01 10 79781636 79781636 G A POLR3A Missense_Mutation p.R344C 0.36 deleterious(0) probably_damaging(0.999) TCGA-V1-A8WL-01 10 88260094 88260094 C T WAPAL Silent p.T302T 0.35 TCGA-V1-A8WL-01 11 106810250 106810250 C T GUCY1A2 Missense_Mutation p.R381Q 0.39 tolerated(0.07) probably_damaging(0.95) TCGA-V1-A8WL-01 11 108199783 108199783 T C ATM Silent p.S2375S 0.39 TCGA-V1-A8WL-01 13 113887612 113887612 A C CUL4A Missense_Mutation p.S212R 0.24 tolerated(0.06) benign(0.345) TCGA-V1-A8WL-01 15 70352868 70352868 C T TLE3 Splice_Site p.X238_splice 0.39 TCGA-V1-A8WL-01 18 67727116 67727116 C T RTTN Missense_Mutation p.R1637Q 0.50 tolerated(0.72) benign(0.001) TCGA-V1-A8WL-01 19 41117233 41117233 G T LTBP4 Silent p.T729T 0.23 TCGA-V1-A8WL-01 19 46891954 46891954 C T PPP5C Missense_Mutation p.R441C 0.36 deleterious(0) possibly_damaging(0.62) TCGA-V1-A8WL-01 19 54872560 54872560 C T LAIR1 Nonsense_Mutation p.W109* 0.24 TCGA-V1-A8WL-01 19 56223890 56223890 C A NLRP9 Silent p.G856G 0.26 TCGA-V1-A8WL-01 19 6670139 6670139 G A TNFSF14 5'UTR 0.43 TCGA-V1-A8WL-01 1 185159704 185159704 G T SWT1 Missense_Mutation p.D485Y 0.26 deleterious(0) probably_damaging(0.993) TCGA-V1-A8WL-01 20 61541166 61541166 T C DIDO1 Missense_Mutation p.D349G 0.30 benign(0.437) TCGA-V1-A8WL-01 2 128186098 128186098 C T PROC Missense_Mutation p.P321L 0.28 deleterious(0) probably_damaging(1) TCGA-V1-A8WL-01 2 201721519 201721519 T C CLK1 Missense_Mutation p.T357A 0.12 tolerated(0.14) benign(0.024) TCGA-V1-A8WL-01 3 142281238 142281238 G A ATR Missense_Mutation p.R336W 0.05 tolerated_low_confidence(0.19) benign(0) TCGA-V1-A8WL-01 3 98487336 98487336 G T ST3GAL6 Missense_Mutation p.V18L 0.31 tolerated(0.06) benign(0.015) TCGA-V1-A8WL-01 4 123848881 123848881 G C SPATA5 Missense_Mutation p.V86L 0.37 deleterious(0.01) possibly_damaging(0.624) TCGA-V1-A8WL-01 4 56755065 56755065 C G EXOC1 Missense_Mutation p.R448G 0.25 tolerated(0.27) possibly_damaging(0.719) TCGA-V1-A8WL-01 5 111540132 111540132 G A EPB41L4A Missense_Mutation p.T439M 0.29 deleterious(0.04) benign(0.14) TCGA-V1-A8WL-01 5 137213210 137213210 G A MYOT Missense_Mutation p.R178H 0.09 deleterious(0.01) probably_damaging(0.985) TCGA-V1-A8WL-01 6 10556756 10556756 C T GCNT2 Intron 0.35 TCGA-V1-A8WL-01 6 28473512 28473512 C T GPX6 Missense_Mutation p.E143K 0.33 tolerated(0.45) benign(0.034) TCGA-V1-A8WL-01 6 52550962 52550962 A - TMEM14A 3'UTR 0.41 TCGA-V1-A8WL-01 6 87725912 87725912 G A HTR1E Missense_Mutation p.R287Q 0.26 deleterious(0) probably_damaging(0.984) TCGA-V1-A8WL-01 6 88853757 88853757 G A CNR1 Missense_Mutation p.P413S 0.30 tolerated(0.86) benign(0.079) TCGA-V1-A8WL-01 8 48776073 48776073 C A PRKDC Silent p.V1878V 0.34 TCGA-V1-A8WL-01 9 132401543 132401543 C T ASB6 Missense_Mutation p.R150H 0.25 tolerated(0.13) benign(0.041) TCGA-V1-A8WL-01 9 138590921 138590921 C T SOHLH1 Silent p.S39S 0.20 TCGA-V1-A8WL-01 9 140347026 140347026 C T NSMF Missense_Mutation p.A382T 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-V1-A8WL-01 X 55039950 55039950 G T ALAS2 Missense_Mutation p.H523Q 0.60 tolerated(0.11) probably_damaging(0.962) TCGA-V1-A8WN-01 10 96701990 96701990 C T CYP2C9 Missense_Mutation p.R125C 0.15 deleterious(0.01) possibly_damaging(0.672) TCGA-V1-A8WN-01 11 993832 993832 C A AP2A2 Silent p.T543T 0.18 TCGA-V1-A8WN-01 13 38164595 38164595 C T POSTN Missense_Mutation p.A119T 0.23 tolerated(0.41) benign(0.067) TCGA-V1-A8WN-01 14 36064859 36064859 T C RALGAPA1 Missense_Mutation p.D1891G 0.15 deleterious(0) probably_damaging(0.998) TCGA-V1-A8WN-01 15 50920444 50920444 T C TRPM7 Missense_Mutation p.T403A 0.13 tolerated(0.1) benign(0.314) TCGA-V1-A8WN-01 19 6496041 6496041 C T TUBB4A Missense_Mutation p.E157K 0.17 deleterious_low_confidence(0.03) benign(0.219) TCGA-V1-A8WN-01 1 110768696 110768696 G A KCNC4 Missense_Mutation p.R572Q 0.10 tolerated(0.33) possibly_damaging(0.47) TCGA-V1-A8WN-01 1 152081869 152081869 T G TCHH Missense_Mutation p.Q1275P 0.05 unknown(0) TCGA-V1-A8WN-01 1 167871270 167871270 G A ADCY10 Silent p.D92D 0.16 TCGA-V1-A8WN-01 1 85331834 85331834 T G LPAR3 5'UTR 0.22 TCGA-V1-A8WN-01 22 30951159 30951159 G A GAL3ST1 Silent p.A351A 0.15 TCGA-V1-A8WN-01 3 47889987 47889987 A T DHX30 Missense_Mutation p.D841V 0.16 tolerated(0.07) benign(0.126) TCGA-V1-A8WN-01 5 140207846 140207846 C T PCDHA6 Missense_Mutation p.A57V 0.05 deleterious_low_confidence(0.04) benign(0.321) TCGA-V1-A8WN-01 5 76171233 76171233 C T S100Z Missense_Mutation p.H17Y 0.09 tolerated(0.1) benign(0.181) TCGA-V1-A8WN-01 6 26509415 26509415 C T BTN1A1 3'UTR 0.08 TCGA-V1-A8WN-01 6 56917924 56917924 A G KIAA1586 Silent p.E209E 0.27 TCGA-V1-A8WN-01 7 142423623 142423623 C T TRBV27 Silent p.F93F 0.17 TCGA-V1-A8WN-01 8 2820067 2820067 A T CSMD1 Silent p.S3183S 0.31 TCGA-V1-A8WN-01 9 37888547 37888547 T C SLC25A51 Translation_Start_Site p.M1? 0.23 tolerated_low_confidence(0.07) benign(0.004) TCGA-V1-A8WN-01 X 149642057 149642057 G A MAMLD1 Intron 0.32 TCGA-V1-A8WS-01 11 105623908 105623908 A G GRIA4 Missense_Mutation p.E150G 0.10 tolerated(0.68) benign(0) TCGA-V1-A8WS-01 11 3687407 3687407 C T CHRNA10 Missense_Mutation p.R428H 0.14 deleterious(0) probably_damaging(0.999) TCGA-V1-A8WS-01 15 23443503 23443503 C T AC100757.1 5'Flank 0.78 TCGA-V1-A8WS-01 16 10575982 10575982 C T ATF7IP2 Missense_Mutation p.T642I 0.38 deleterious(0) probably_damaging(0.98) TCGA-V1-A8WS-01 16 58713793 58713793 C T SLC38A7 Missense_Mutation p.G80R 0.43 deleterious(0.02) possibly_damaging(0.452) TCGA-V1-A8WS-01 17 43345071 43345071 C T MAP3K14-AS1 RNA 0.06 TCGA-V1-A8WS-01 17 65916199 65916199 C T BPTF Nonsense_Mutation p.R1833* 0.05 TCGA-V1-A8WS-01 19 4292688 4292688 C T TMIGD2 Missense_Mutation p.G253S 0.19 tolerated(0.9) benign(0.015) TCGA-V1-A8WS-01 19 53343985 53343985 T G ZNF468 Missense_Mutation p.K521T 0.27 deleterious(0.01) possibly_damaging(0.758) TCGA-V1-A8WS-01 1 158648191 158648191 C A SPTA1 Missense_Mutation p.R271M 0.05 deleterious(0) probably_damaging(1) TCGA-V1-A8WS-01 1 24020353 24020353 T C RPL11 Missense_Mutation p.C72R 0.44 deleterious(0.04) probably_damaging(0.933) TCGA-V1-A8WS-01 1 41990537 41990537 C T HIVEP3 Missense_Mutation p.R1751Q 0.38 probably_damaging(0.996) TCGA-V1-A8WS-01 20 37580234 37580234 G T FAM83D Missense_Mutation p.G307C 0.49 deleterious(0) probably_damaging(1) TCGA-V1-A8WS-01 20 44670163 44670163 C A SLC12A5 Silent p.A373A 0.31 TCGA-V1-A8WS-01 20 47887616 47887616 T G ZNFX1 Missense_Mutation p.S245R 0.07 tolerated(0.18) benign(0.009) TCGA-V1-A8WS-01 20 62730046 62730046 C T OPRL1 Missense_Mutation p.A336V 0.31 tolerated(0.14) benign(0.031) TCGA-V1-A8WS-01 2 128480231 128480231 C A WDR33 Missense_Mutation p.K484N 0.06 deleterious(0.02) unknown(0) TCGA-V1-A8WS-01 2 25861942 25861942 A G DTNB Missense_Mutation p.I30T 0.29 deleterious(0) probably_damaging(0.998) TCGA-V1-A8WS-01 4 100434271 100434271 G A C4orf17 Silent p.Q11Q 0.14 TCGA-V1-A8WS-01 5 140573971 140573971 G T PCDHB10 Missense_Mutation p.G616C 0.26 deleterious_low_confidence(0.01) benign(0.288) TCGA-V1-A8WS-01 5 140798188 140798188 C T PCDHGB7 Silent p.D254D 0.09 TCGA-V1-A8WS-01 5 152873564 152873564 G A GRIA1 Silent p.P63P 0.09 TCGA-V1-A8WS-01 5 177419968 177419968 G A PROP1 Silent p.A141A 0.18 TCGA-V1-A8WS-01 6 88120351 88120351 A G C6ORF165 Missense_Mutation p.T53A 0.07 tolerated(0.18) benign(0.003) TCGA-V1-A8WS-01 7 88964899 88964899 G A ZNF804B Missense_Mutation p.S868N 0.28 tolerated(0.46) benign(0.003) TCGA-V1-A8WS-01 7 95039375 95039375 T C PON2 Missense_Mutation p.Y178C 0.47 deleterious(0.02) probably_damaging(0.976) TCGA-V1-A8WS-01 9 129977092 129977092 G T RALGPS1 Missense_Mutation p.D539Y 0.30 deleterious(0.03) possibly_damaging(0.643) TCGA-V1-A8WS-01 9 15678826 15678826 A G CCDC171 Missense_Mutation p.I383V 0.14 tolerated(0.28) benign(0.029) TCGA-V1-A8WS-01 9 85615158 85615158 G A RASEF Missense_Mutation p.A550V 0.12 deleterious(0.05) probably_damaging(0.999) TCGA-V1-A8WS-01 X 34961838 34961838 C T FAM47B Missense_Mutation p.P297L 0.18 tolerated(0.7) benign(0.002) TCGA-V1-A8WS-01 X 40506743 40506743 G A CXorf38 Silent p.L10L 0.65 TCGA-V1-A8WV-01 10 21169734 21169734 G A NEBL Missense_Mutation p.H157Y 0.11 tolerated(0.31) benign(0.003) TCGA-V1-A8WV-01 10 77806998 77806998 A C C10orf11 Missense_Mutation p.N84T 0.14 deleterious(0) probably_damaging(0.996) TCGA-V1-A8WV-01 11 118514553 118514553 C T PHLDB1 Silent p.S971S 0.35 TCGA-V1-A8WV-01 11 20424497 20424497 C T PRMT3 Silent p.F246F 0.31 TCGA-V1-A8WV-01 11 5013446 5013446 G C MMP26 Missense_Mutation p.E254Q 0.19 tolerated(0.17) benign(0.081) TCGA-V1-A8WV-01 11 65271416 65271416 T G MALAT1 RNA 0.25 TCGA-V1-A8WV-01 11 67818000 67818000 C T TCIRG1 Silent p.G761G 0.12 TCGA-V1-A8WV-01 12 100617651 100617657 AGAAAAT - ACTR6 Frame_Shift_Del p.E384Dfs*16 0.14 TCGA-V1-A8WV-01 12 124812062 124812062 G A NCOR2 Missense_Mutation p.P2359L 0.07 probably_damaging(0.997) TCGA-V1-A8WV-01 12 88560143 88560143 A G TMTC3 Silent p.T278T 0.06 TCGA-V1-A8WV-01 13 73637976 73637992 TATACCAAGTCTTCTCA - KLF5 Frame_Shift_Del p.Y384Ffs*11 0.17 TCGA-V1-A8WV-01 15 87572053 87572053 C A AGBL1 Intron 0.27 TCGA-V1-A8WV-01 16 51174514 51174514 C T SALL1 Missense_Mutation p.S540N 0.28 tolerated(0.09) benign(0.019) TCGA-V1-A8WV-01 17 79479005 79479005 A T ACTG1 Missense_Mutation p.V96E 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-V1-A8WV-01 18 47806259 47806260 - A MBD1 Frame_Shift_Ins p.Y35Lfs*14 0.41 TCGA-V1-A8WV-01 18 65180992 65180992 T G DSEL Missense_Mutation p.K295T 0.05 deleterious(0) probably_damaging(0.973) TCGA-V1-A8WV-01 19 40392712 40392712 G C FCGBP Missense_Mutation p.P2598A 0.30 benign(0.002) TCGA-V1-A8WV-01 19 53453374 53453374 G A ZNF816 Missense_Mutation p.L552F 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-V1-A8WV-01 1 151107658 151107658 G A SEMA6C Missense_Mutation p.R521W 0.21 deleterious(0) possibly_damaging(0.646) TCGA-V1-A8WV-01 1 154965559 154965559 C G FLAD1 3'UTR 0.33 TCGA-V1-A8WV-01 1 157803022 157803022 G A CD5L Silent p.H333H 0.43 TCGA-V1-A8WV-01 1 16918743 16918743 G A NBPF1 5'UTR 0.29 TCGA-V1-A8WV-01 1 181701857 181701857 C T CACNA1E Missense_Mutation p.R879W 0.38 deleterious(0) possibly_damaging(0.689) TCGA-V1-A8WV-01 1 39853372 39853372 A G MACF1 Missense_Mutation p.E2891G 0.22 probably_damaging(0.939) TCGA-V1-A8WV-01 1 52947299 52947319 GCCTTCAATCTATATAAAAAG - ZCCHC11 Splice_Site p.X546_splice 0.20 TCGA-V1-A8WV-01 1 63027353 63027353 A T DOCK7 Missense_Mutation p.W712R 0.16 deleterious(0) probably_damaging(1) TCGA-V1-A8WV-01 20 44644994 44644994 G T MMP9 Missense_Mutation p.C704F 0.19 deleterious(0) probably_damaging(0.999) TCGA-V1-A8WV-01 20 44693760 44693760 C T NCOA5 Missense_Mutation p.S246N 0.20 tolerated(0.1) benign(0.004) TCGA-V1-A8WV-01 20 58567470 58567470 G A CDH26 Missense_Mutation p.V441I 0.22 tolerated(0.12) benign(0.13) TCGA-V1-A8WV-01 21 34951736 34951736 A G DONSON Missense_Mutation p.S495P 0.33 deleterious(0.01) possibly_damaging(0.733) TCGA-V1-A8WV-01 22 22712528 22712528 G C IGLV1-47 Missense_Mutation p.A91P 0.37 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-V1-A8WV-01 22 50437763 50437763 C T IL17REL Silent p.A186A 0.15 TCGA-V1-A8WV-01 2 110303495 110303495 C T SEPT10 Intron 0.42 TCGA-V1-A8WV-01 2 220412497 220412497 G A TMEM198 Missense_Mutation p.V146M 0.21 deleterious(0.01) possibly_damaging(0.867) TCGA-V1-A8WV-01 2 25170415 25170415 G A DNAJC27 3'UTR 0.16 TCGA-V1-A8WV-01 3 87018025 87018025 A G VGLL3 Missense_Mutation p.S218P 0.15 tolerated(0.23) benign(0.001) TCGA-V1-A8WV-01 4 104044027 104044027 C T CENPE Splice_Site p.X2381_splice 0.11 TCGA-V1-A8WV-01 5 140723618 140723618 T A PCDHGA3 Missense_Mutation p.S6R 0.26 tolerated_low_confidence(1) benign(0) TCGA-V1-A8WV-01 5 149357907 149357907 T - SLC26A2 Frame_Shift_Del p.Y232Ifs*3 0.19 TCGA-V1-A8WV-01 5 65322164 65322164 T C ERBB2IP Missense_Mutation p.L352P 0.18 deleterious(0) probably_damaging(1) TCGA-V1-A8WV-01 6 111210071 111210071 T G AMD1 Missense_Mutation p.M70R 0.25 deleterious(0) probably_damaging(0.965) TCGA-V1-A8WV-01 6 146242326 146242326 C T SHPRH Missense_Mutation p.E1329K 0.18 deleterious(0.01) probably_damaging(0.928) TCGA-V1-A8WV-01 6 55120018 55120018 A G HCRTR2 Missense_Mutation p.K163E 0.14 deleterious(0) probably_damaging(0.911) TCGA-V1-A8WV-01 7 53103908 53103908 C A POM121L12 Missense_Mutation p.L182I 0.29 deleterious(0.02) possibly_damaging(0.494) TCGA-V1-A8WV-01 7 79082369 79082369 T C MAGI2 Missense_Mutation p.K90E 0.13 deleterious(0.02) benign(0.028) TCGA-V1-A8WV-01 8 113267582 113267582 C A CSMD3 Missense_Mutation p.V3313F 0.46 deleterious(0) possibly_damaging(0.616) TCGA-V1-A8WV-01 8 120865380 120865380 T C DSCC1 Silent p.A86A 0.12 TCGA-V1-A8WV-01 8 17817936 17817936 G A PCM1 Missense_Mutation p.A769T 0.10 deleterious(0.05) probably_damaging(0.988) TCGA-V1-A8WV-01 9 132853235 132853235 A C GPR107 Silent p.P234P 0.17 TCGA-V1-A8WV-01 9 139929144 139929144 C A C9orf139 Missense_Mutation p.R71S 0.26 tolerated_low_confidence(0.42) benign(0) TCGA-V1-A8WV-01 X 151900289 151900289 C T MAGEA12 Missense_Mutation p.R171H 0.64 deleterious(0) benign(0.001) TCGA-V1-A8WV-01 X 153696269 153696269 G A PLXNA3 Missense_Mutation p.A1249T 0.48 tolerated(0.11) probably_damaging(0.998) TCGA-V1-A8WW-01 10 69666644 69666644 T A SIRT1 Missense_Mutation p.I347K 0.36 deleterious(0) probably_damaging(1) TCGA-V1-A8WW-01 11 111558815 111558815 G A SIK2 Missense_Mutation p.R136Q 0.36 tolerated(0.07) probably_damaging(0.912) TCGA-V1-A8WW-01 11 33689492 33689492 G A KIAA1549L Missense_Mutation p.R1781H 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-V1-A8WW-01 11 55371422 55371422 A T OR4C11 Missense_Mutation p.I143N 0.07 deleterious(0) possibly_damaging(0.908) TCGA-V1-A8WW-01 12 14589075 14589075 G A ATF7IP Missense_Mutation p.D561N 0.70 deleterious_low_confidence(0.03) possibly_damaging(0.728) TCGA-V1-A8WW-01 12 14589162 14589162 G C ATF7IP Missense_Mutation p.D590H 0.63 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-V1-A8WW-01 12 53217008 53217008 G A KRT79 Nonsense_Mutation p.Q387* 0.33 TCGA-V1-A8WW-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.61 deleterious(0) probably_damaging(0.999) TCGA-V1-A8WW-01 14 53324977 53324977 G T FERMT2 3'UTR 0.43 TCGA-V1-A8WW-01 15 43038000 43038000 C T TTBK2 Missense_Mutation p.S1243N 0.33 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-V1-A8WW-01 15 85461836 85461836 G T SLC28A1 Splice_Site p.X292_splice 0.44 TCGA-V1-A8WW-01 16 30500700 30500700 C A ITGAL Silent p.G402G 0.18 TCGA-V1-A8WW-01 16 321439 321439 C A RGS11 Silent p.A236A 0.42 TCGA-V1-A8WW-01 17 15619875 15619875 T G ZNF286A Silent p.S279S 0.37 TCGA-V1-A8WW-01 17 38033094 38033094 T A ZPBP2 3'UTR 0.42 TCGA-V1-A8WW-01 18 670815 670815 T A TYMS Missense_Mutation p.I227N 0.55 deleterious(0) probably_damaging(0.999) TCGA-V1-A8WW-01 18 73122856 73122856 C T SMIM21 Missense_Mutation p.R90H 0.12 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-V1-A8WW-01 19 12769127 12769127 C T MAN2B1 Missense_Mutation p.A381T 0.28 deleterious(0) probably_damaging(0.971) TCGA-V1-A8WW-01 19 56421986 56421986 G A NLRP13 Missense_Mutation p.S742F 0.06 deleterious(0.03) possibly_damaging(0.825) TCGA-V1-A8WW-01 19 56422072 56422072 G A NLRP13 Silent p.H713H 0.27 TCGA-V1-A8WW-01 1 11189830 11189830 G C MTOR Silent p.S1893S 0.24 TCGA-V1-A8WW-01 1 228481946 228481946 C T OBSCN Missense_Mutation p.P4171L 0.44 probably_damaging(0.999) TCGA-V1-A8WW-01 1 235944227 235944227 G A LYST Nonsense_Mutation p.R1718* 0.05 TCGA-V1-A8WW-01 20 4880337 4880337 C T SLC23A2 Missense_Mutation p.G116S 0.46 tolerated(0.17) probably_damaging(1) TCGA-V1-A8WW-01 2 233655742 233655742 G T GIGYF2 Nonsense_Mutation p.E341* 0.32 TCGA-V1-A8WW-01 2 234368918 234368918 C T DGKD Missense_Mutation p.P970S 0.33 tolerated(0.68) benign(0.002) TCGA-V1-A8WW-01 2 239307604 239307604 G - TRAF3IP1 3'UTR 0.34 TCGA-V1-A8WW-01 2 25383999 25383999 G A POMC Missense_Mutation p.T252M 0.18 deleterious(0) probably_damaging(0.919) TCGA-V1-A8WW-01 2 90193331 90193331 C T IGKV1D-13 Silent p.G86G 0.35 TCGA-V1-A8WW-01 3 33038803 33038803 G A GLB1 Missense_Mutation p.R590C 0.41 deleterious(0) probably_damaging(1) TCGA-V1-A8WW-01 4 114280141 114280141 G A ANK2 Missense_Mutation p.G3456D 0.25 benign(0.005) TCGA-V1-A8WW-01 5 52211329 52211329 A T ITGA1 Missense_Mutation p.K631N 0.09 deleterious(0.02) probably_damaging(0.928) TCGA-V1-A8WW-01 6 14131839 14131839 C A CD83 Missense_Mutation p.S81Y 0.33 deleterious(0) probably_damaging(0.989) TCGA-V1-A8WW-01 6 34835110 34835110 C T UHRF1BP1 Missense_Mutation p.A1174V 0.11 tolerated(1) benign(0.002) TCGA-V1-A8WW-01 6 3727804 3727804 C T PXDC1 Missense_Mutation p.V187M 0.22 tolerated_low_confidence(0.07) benign(0.004) TCGA-V1-A8WW-01 7 100678493 100678493 A T MUC17 Missense_Mutation p.T1266S 0.26 unknown(0) TCGA-V1-A8WW-01 7 142111577 142111577 C T TRBV5-7 Silent p.S53S 0.11 TCGA-V1-A8WW-01 7 151135077 151135077 C T CRYGN Intron 0.60 TCGA-V1-A8WW-01 8 93088331 93088331 G A RUNX1T1 Intron 0.53 TCGA-V1-A8WW-01 8 95423537 95423537 G A RAD54B Missense_Mutation p.S104L 0.08 tolerated(0.36) benign(0.003) TCGA-V1-A8WW-01 9 131112789 131112789 A G SLC27A4 Missense_Mutation p.Y271C 0.43 deleterious(0.02) probably_damaging(0.987) TCGA-V1-A8WW-01 9 33221060 33221060 G C SPINK4 Silent p.S28S 0.17 TCGA-V1-A8WW-01 X 14863074 14863074 T C FANCB Missense_Mutation p.K611E 0.86 tolerated(1) benign(0.001) TCGA-V1-A8X3-01 10 48388029 48388029 T C RBP3 Missense_Mutation p.D950G 0.34 deleterious(0.01) possibly_damaging(0.539) TCGA-V1-A8X3-01 10 73326638 73326638 T A CDH23 Missense_Mutation p.I190N 0.09 tolerated(0.14) benign(0.034) TCGA-V1-A8X3-01 11 1217631 1217631 G A MUC5AC RNA 0.19 TCGA-V1-A8X3-01 11 2427341 2427341 T G TRPM5 Intron 0.17 TCGA-V1-A8X3-01 11 65266350 65266350 C T MALAT1 RNA 0.10 TCGA-V1-A8X3-01 11 89070616 89070616 T A NOX4 Missense_Mutation p.Q505L 0.04 deleterious(0.01) probably_damaging(0.986) TCGA-V1-A8X3-01 12 52306277 52306277 A G ACVRL1 Missense_Mutation p.R7G 0.18 deleterious_low_confidence(0.02) benign(0.014) TCGA-V1-A8X3-01 13 113909105 113909105 G A CUL4A Silent p.T617T 0.32 TCGA-V1-A8X3-01 14 24791404 24791404 G A ADCY4 Silent p.F818F 0.05 TCGA-V1-A8X3-01 14 35592719 35592719 G A KIAA0391 Missense_Mutation p.A90T 0.07 deleterious(0.03) probably_damaging(0.981) TCGA-V1-A8X3-01 15 34157424 34157424 A C RYR3 Silent p.G4870G 0.15 TCGA-V1-A8X3-01 17 79892863 79892863 G A PYCR1 Missense_Mutation p.T160M 0.26 tolerated(0.22) possibly_damaging(0.655) TCGA-V1-A8X3-01 19 4793551 4793551 A G FEM1A Missense_Mutation p.H562R 0.17 tolerated(0.51) benign(0.003) TCGA-V1-A8X3-01 1 155449429 155449429 G A ASH1L Nonsense_Mutation p.Q1078* 0.10 TCGA-V1-A8X3-01 1 231362810 231362810 C T C1orf131 Missense_Mutation p.R172H 0.11 deleterious(0) probably_damaging(1) TCGA-V1-A8X3-01 1 27720644 27720644 C T GPR3 Silent p.G114G 0.19 TCGA-V1-A8X3-01 20 31673924 31673924 C T BPIFB4 Nonsense_Mutation p.R294* 0.29 TCGA-V1-A8X3-01 2 125262091 125262091 G A CNTNAP5 Missense_Mutation p.V428M 0.12 tolerated(0.11) possibly_damaging(0.482) TCGA-V1-A8X3-01 2 169038559 169038559 G T STK39 Missense_Mutation p.P84T 0.15 deleterious(0.03) benign(0.359) TCGA-V1-A8X3-01 2 229890709 229890709 G A PID1 Missense_Mutation p.P129L 0.06 deleterious(0.01) benign(0.356) TCGA-V1-A8X3-01 3 164716358 164716358 G A SI Nonsense_Mutation p.R1504* 0.20 TCGA-V1-A8X3-01 4 3205828 3205828 A G HTT Missense_Mutation p.R1891G 0.38 possibly_damaging(0.458) TCGA-V1-A8X3-01 5 147781593 147781593 T C FBXO38 Missense_Mutation p.V104A 0.20 deleterious(0) probably_damaging(0.954) TCGA-V1-A8X3-01 6 155750120 155750120 G A NOX3 Missense_Mutation p.A318V 0.08 tolerated(0.06) benign(0.046) TCGA-V1-A8X3-01 6 161529848 161529848 A G MAP3K4 Missense_Mutation p.K1398R 0.04 tolerated(0.1) possibly_damaging(0.799) TCGA-V1-A8X3-01 7 128484281 128484281 G A FLNC Silent p.P1051P 0.13 TCGA-V1-A8X3-01 7 92763220 92763220 G A SAMD9L Nonsense_Mutation p.R689* 0.13 TCGA-V1-A8X3-01 8 35406946 35406946 C T UNC5D Silent p.A80A 0.19 TCGA-V1-A8X3-01 8 66701169 66701169 A C PDE7A Intron 0.30 TCGA-V1-A8X3-01 9 139975261 139975261 G A UAP1L1 Silent p.R433R 0.22 TCGA-V1-A8X3-01 X 12736537 12736537 C A FRMPD4 Silent p.R1198R 0.07 TCGA-V1-A8X3-01 X 3240659 3240659 T C MXRA5 Missense_Mutation p.I1023V 0.64 tolerated(0.31) benign(0) TCGA-V1-A8X3-01 X 43590980 43590980 G A MAOA Missense_Mutation p.A279T 0.35 tolerated(0.71) benign(0.002) TCGA-V1-A9O5-01 10 93902802 93902802 A T CPEB3 Silent p.S479S 0.07 TCGA-V1-A9O5-01 11 68540743 68540743 G A CPT1A Missense_Mutation p.A577V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-V1-A9O5-01 12 121880545 121880545 G A KDM2B Missense_Mutation p.A900V 0.38 tolerated_low_confidence(0.12) benign(0.306) TCGA-V1-A9O5-01 12 44180481 44180481 A G IRAK4 Splice_Site p.X450_splice 0.05 TCGA-V1-A9O5-01 12 66597578 66597578 G T IRAK3 Missense_Mutation p.W74L 0.19 deleterious(0) probably_damaging(1) TCGA-V1-A9O5-01 12 9086525 9086525 C G PHC1 Missense_Mutation p.S653C 0.23 deleterious(0.02) unknown(0) TCGA-V1-A9O5-01 14 24651222 24651222 G A IPO4 Nonsense_Mutation p.R916* 0.24 TCGA-V1-A9O5-01 14 31364637 31364637 G T STRN3 Missense_Mutation p.L792I 0.39 deleterious(0) probably_damaging(0.984) TCGA-V1-A9O5-01 14 74825597 74825597 A G VRTN 3'UTR 0.30 TCGA-V1-A9O5-01 14 91252588 91252588 C T TTC7B Missense_Mutation p.R69Q 0.24 tolerated(0.49) benign(0.001) TCGA-V1-A9O5-01 17 29490363 29490363 T - NF1 Frame_Shift_Del p.F150Sfs*15 0.20 TCGA-V1-A9O5-01 17 37792097 37792097 C A PPP1R1B Silent p.S198S 0.18 TCGA-V1-A9O5-01 17 48703707 48703709 GAA - CACNA1G In_Frame_Del p.K2245del 0.25 TCGA-V1-A9O5-01 17 7577566 7577566 T C TP53 Missense_Mutation p.N239D 0.46 deleterious(0) probably_damaging(1) TCGA-V1-A9O5-01 17 76989914 76989914 G T CANT1 Missense_Mutation p.S308R 0.17 deleterious(0.05) benign(0.038) TCGA-V1-A9O5-01 18 29497560 29497560 A - TRAPPC8 Frame_Shift_Del p.L142* 0.18 TCGA-V1-A9O5-01 18 76754090 76754090 C T SALL3 Missense_Mutation p.T700M 0.20 deleterious(0) probably_damaging(0.998) TCGA-V1-A9O5-01 19 10385561 10385561 C T ICAM1 Missense_Mutation p.P63L 0.17 tolerated(0.47) benign(0.03) TCGA-V1-A9O5-01 19 13189499 13189499 G A NFIX Missense_Mutation p.R343H 0.36 deleterious(0.02) benign(0.021) TCGA-V1-A9O5-01 19 14523412 14523412 G A DDX39A Missense_Mutation p.A96V 0.07 deleterious(0.01) possibly_damaging(0.821) TCGA-V1-A9O5-01 19 1481849 1481849 C T PCSK4 Missense_Mutation p.G726D 0.12 tolerated(0.58) benign(0.018) TCGA-V1-A9O5-01 19 3600596 3600596 G A TBXA2R Missense_Mutation p.R13W 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-V1-A9O5-01 19 4511994 4511994 C T PLIN4 Missense_Mutation p.A646T 0.24 tolerated(0.12) benign(0.197) TCGA-V1-A9O5-01 19 54600377 54600377 C T OSCAR Missense_Mutation p.V53M 0.26 deleterious(0) probably_damaging(0.989) TCGA-V1-A9O5-01 19 6496111 6496111 G A TUBB4A Silent p.F133F 0.04 TCGA-V1-A9O5-01 1 152279252 152279252 T C FLG Missense_Mutation p.T2704A 0.25 benign(0.048) TCGA-V1-A9O5-01 1 156213537 156213537 C A PAQR6 3'UTR 0.18 TCGA-V1-A9O5-01 1 158943506 158943506 C A PYHIN1 Missense_Mutation p.P477T 0.15 tolerated_low_confidence(0.4) benign(0.021) TCGA-V1-A9O5-01 1 16532162 16532162 G A ARHGEF19 Silent p.L484L 0.23 TCGA-V1-A9O5-01 1 169952443 169952443 G A KIFAP3 Nonsense_Mutation p.Q492* 0.16 TCGA-V1-A9O5-01 1 176640135 176640135 A G PAPPA2 Missense_Mutation p.E674G 0.14 deleterious(0.01) probably_damaging(0.914) TCGA-V1-A9O5-01 1 8482823 8482825 GAA - RERE In_Frame_Del p.F416del 0.20 TCGA-V1-A9O5-01 21 47831939 47831939 C A PCNT Silent p.A1984A 0.19 TCGA-V1-A9O5-01 22 37603776 37603776 G A SSTR3 Missense_Mutation p.P23S 0.06 tolerated(0.3) benign(0.003) TCGA-V1-A9O5-01 22 41605628 41605628 C G L3MBTL2 Intron 0.35 TCGA-V1-A9O5-01 2 171693379 171693379 G A GAD1 Silent p.T208T 0.05 TCGA-V1-A9O5-01 3 127981001 127981001 G A EEFSEC Silent p.A185A 0.31 TCGA-V1-A9O5-01 5 35039555 35039555 G A AGXT2 Missense_Mutation p.T79M 0.19 tolerated(0.24) benign(0.018) TCGA-V1-A9O5-01 7 104753181 104753181 C A KMT2E Missense_Mutation p.H1660N 0.06 deleterious_low_confidence(0.01) benign(0.107) TCGA-V1-A9O5-01 7 48353865 48353865 G - ABCA13 Frame_Shift_Del p.G3240Vfs*6 0.14 TCGA-V1-A9O5-01 8 10557913 10557913 G A C8orf74 Missense_Mutation p.A273T 0.15 tolerated(0.58) benign(0.002) TCGA-V1-A9O5-01 8 144893085 144893085 G A SCRIB Missense_Mutation p.P422S 0.20 benign(0.094) TCGA-V1-A9O5-01 8 144941923 144941923 C T EPPK1 Silent p.T1833T 0.68 TCGA-V1-A9O5-01 8 18257669 18257669 A T NAT2 Missense_Mutation p.L52F 0.42 deleterious(0.02) possibly_damaging(0.494) TCGA-V1-A9O5-01 9 65506469 65506469 C T SPATA31A7 Missense_Mutation p.R364Q 0.04 tolerated(0.1) benign(0) TCGA-V1-A9O5-01 X 27997700 27997700 T C DCAF8L1 Silent p.S584S 0.60 TCGA-V1-A9O5-01 X 54276007 54276007 T C WNK3 Missense_Mutation p.N925S 0.77 tolerated(0.24) benign(0.016) TCGA-V1-A9O7-01 10 51892717 51892717 T A FAM21A 3'UTR 0.15 TCGA-V1-A9O7-01 11 108159780 108159784 TGTCA - ATM Frame_Shift_Del p.C1396* 0.21 TCGA-V1-A9O7-01 12 104513470 104513470 C G NFYB 3'UTR 0.09 TCGA-V1-A9O7-01 12 130926705 130926705 G A RIMBP2 Nonsense_Mutation p.Q381* 0.20 TCGA-V1-A9O7-01 14 79746701 79746701 T A NRXN3 Intron 0.05 TCGA-V1-A9O7-01 15 28463646 28463646 G A HERC2 Missense_Mutation p.T2006M 0.04 benign(0.001) TCGA-V1-A9O7-01 16 23080594 23080594 G A USP31 Silent p.V944V 0.09 TCGA-V1-A9O7-01 16 67919731 67919731 C T NRN1L Silent p.R62R 0.06 TCGA-V1-A9O7-01 17 16722536 16722536 T C AC022596.6 RNA 0.15 TCGA-V1-A9O7-01 17 41143701 41143701 C T RUNDC1 Missense_Mutation p.R604C 0.08 deleterious(0) probably_damaging(0.991) TCGA-V1-A9O7-01 17 42293033 42293033 C T UBTF Missense_Mutation p.E155K 0.13 deleterious(0.01) probably_damaging(0.928) TCGA-V1-A9O7-01 17 46608026 46608026 G T HOXB1 Missense_Mutation p.P81T 0.13 tolerated(0.85) benign(0.003) TCGA-V1-A9O7-01 17 80400435 80400435 A T HEXDC Silent p.T575T 0.09 TCGA-V1-A9O7-01 18 34839138 34839138 C G CELF4 Intron 0.06 TCGA-V1-A9O7-01 19 54802057 54802057 C T LILRA3 Silent p.K377K 0.08 TCGA-V1-A9O7-01 19 7693125 7693125 G C XAB2 Missense_Mutation p.C37W 0.10 tolerated(0.18) possibly_damaging(0.662) TCGA-V1-A9O7-01 1 151345144 151345144 G T SELENBP1 5'UTR 0.30 TCGA-V1-A9O7-01 1 154113942 154113942 G A NUP210L Silent p.N177N 0.07 TCGA-V1-A9O7-01 1 159505743 159505743 T C OR10J5 Missense_Mutation p.S19G 0.06 tolerated(0.08) benign(0.005) TCGA-V1-A9O7-01 2 18768342 18768342 G A NT5C1B Missense_Mutation p.A73V 0.16 tolerated_low_confidence(1) benign(0.009) TCGA-V1-A9O7-01 2 198949686 198949686 C T PLCL1 Missense_Mutation p.A482V 0.11 tolerated(0.16) benign(0.304) TCGA-V1-A9O7-01 2 73680580 73680580 C T ALMS1 Missense_Mutation p.T2308M 0.07 probably_damaging(0.941) TCGA-V1-A9O7-01 5 153190676 153190676 G T GRIA1 Missense_Mutation p.G881V 0.19 tolerated_low_confidence(0.18) possibly_damaging(0.694) TCGA-V1-A9O7-01 6 132939003 132939003 T C TAAR2 Silent p.T114T 0.17 TCGA-V1-A9O7-01 6 143784112 143784112 C G PEX3 Missense_Mutation p.L89V 0.11 deleterious(0.01) probably_damaging(0.982) TCGA-V1-A9O7-01 6 161016418 161016418 G T LPA Missense_Mutation p.P1146Q 0.15 tolerated(0.11) probably_damaging(0.997) TCGA-V1-A9O7-01 6 31852259 31852259 C T EHMT2 Missense_Mutation p.R894H 0.14 tolerated(0.23) benign(0.004) TCGA-V1-A9O7-01 7 102944392 102944392 C T PMPCB Silent p.T187T 0.12 TCGA-V1-A9O7-01 7 152373125 152373125 C T XRCC2 Splice_Site p.X13_splice 0.14 TCGA-V1-A9O7-01 8 143558561 143558561 G A BAI1 Missense_Mutation p.V382M 0.15 deleterious(0.03) possibly_damaging(0.867) TCGA-V1-A9O7-01 8 55542654 55542654 T C RP1 Missense_Mutation p.L2071S 0.09 deleterious(0) probably_damaging(0.92) TCGA-V1-A9O7-01 8 56866508 56866508 G A LYN Missense_Mutation p.R252K 0.09 tolerated(1) benign(0) TCGA-V1-A9O7-01 8 61761625 61761625 G T CHD7 Missense_Mutation p.W1772C 0.06 probably_damaging(0.997) TCGA-V1-A9O7-01 8 73479906 73479906 G A KCNB2 5'UTR 0.11 TCGA-V1-A9O7-01 9 135553528 135553528 C T GTF3C4 Silent p.C174C 0.09 TCGA-V1-A9O7-01 9 84562813 84562813 G A RP11-383M4.6 Intron 0.33 TCGA-V1-A9O7-01 X 147024667 147024667 G A FMR1 Missense_Mutation p.R431H 0.22 tolerated(0.08) benign(0.379) TCGA-V1-A9O7-01 X 1497571 1497571 C A IL3RA Silent p.G298G 0.12 TCGA-V1-A9O9-01 10 134017271 134017271 G A DPYSL4 Silent p.A489A 0.08 TCGA-V1-A9O9-01 10 871233 871233 C A LARP4B Missense_Mutation p.R419L 0.12 deleterious(0) probably_damaging(0.999) TCGA-V1-A9O9-01 10 92655210 92655210 G C RPP30 Splice_Site p.X184_splice 0.05 TCGA-V1-A9O9-01 11 55681766 55681766 G T OR5W2 Missense_Mutation p.A98D 0.16 deleterious(0) possibly_damaging(0.893) TCGA-V1-A9O9-01 11 56000622 56000622 A T OR5T2 Missense_Mutation p.L14M 0.20 deleterious_low_confidence(0.02) benign(0.189) TCGA-V1-A9O9-01 13 39435627 39435627 C A FREM2 Missense_Mutation p.R2527S 0.25 tolerated(0.11) possibly_damaging(0.571) TCGA-V1-A9O9-01 14 93684909 93684909 G A UBR7 Missense_Mutation p.R213Q 0.05 tolerated(0.58) benign(0.001) TCGA-V1-A9O9-01 15 48773910 48773910 T C FBN1 Silent p.S1302S 0.23 TCGA-V1-A9O9-01 15 91449677 91449677 C T MAN2A2 Missense_Mutation p.A262V 0.15 deleterious(0) probably_damaging(1) TCGA-V1-A9O9-01 15 93545418 93545418 G A CHD2 Silent p.L1383L 0.04 TCGA-V1-A9O9-01 16 3140425 3140425 C - ZSCAN10 Frame_Shift_Del p.G282Afs*18 0.09 TCGA-V1-A9O9-01 16 49670758 49670758 C T ZNF423 Missense_Mutation p.V769I 0.09 tolerated(0.09) possibly_damaging(0.825) TCGA-V1-A9O9-01 16 67183794 67183794 C T B3GNT9 Missense_Mutation p.D199N 0.15 deleterious(0) probably_damaging(1) TCGA-V1-A9O9-01 17 7760441 7760441 T C LSMD1 Missense_Mutation p.M101V 0.06 tolerated(0.14) benign(0.171) TCGA-V1-A9O9-01 17 78286955 78286955 C T RNF213 Silent p.V933V 0.11 TCGA-V1-A9O9-01 19 50752255 50752255 G A MYH14 Silent p.A447A 0.14 TCGA-V1-A9O9-01 1 111494472 111494472 G A LRIF1 Missense_Mutation p.T345M 0.25 deleterious(0) benign(0.154) TCGA-V1-A9O9-01 1 200587123 200587123 C T KIF14 Silent p.K243K 0.04 TCGA-V1-A9O9-01 1 207297289 207297289 A G C4BPA Missense_Mutation p.T151A 0.10 deleterious(0) possibly_damaging(0.518) TCGA-V1-A9O9-01 1 23637069 23637069 A - HNRNPR Frame_Shift_Del p.W597Gfs*46 0.14 TCGA-V1-A9O9-01 1 28167550 28167550 T G PPP1R8 Missense_Mutation p.I99M 0.11 tolerated(0.13) benign(0.268) TCGA-V1-A9O9-01 1 9019055 9019055 C T CA6 Silent p.F165F 0.08 TCGA-V1-A9O9-01 21 16339835 16339835 T - NRIP1 Frame_Shift_Del p.T227Qfs*4 0.22 TCGA-V1-A9O9-01 22 17525813 17525813 C T CECR7 RNA 0.07 TCGA-V1-A9O9-01 2 238940869 238940869 G A UBE2F Missense_Mutation p.V140I 0.31 tolerated(0.32) benign(0.016) TCGA-V1-A9O9-01 2 8910799 8910810 CCTTTCGTAGAT - KIDINS220 Splice_Site p.X1001_splice 0.17 TCGA-V1-A9O9-01 3 125286305 125286305 G C OSBPL11 Missense_Mutation p.C267W 0.08 deleterious(0) probably_damaging(0.99) TCGA-V1-A9O9-01 3 35785414 35785414 C T ARPP21 Silent p.N664N 0.15 TCGA-V1-A9O9-01 3 38595989 38595989 C T SCN5A Missense_Mutation p.V1532I 0.10 tolerated(1) probably_damaging(0.996) TCGA-V1-A9O9-01 3 48685794 48685794 C A CELSR3 Missense_Mutation p.G2293V 0.37 tolerated(0.47) possibly_damaging(0.598) TCGA-V1-A9O9-01 4 71508119 71508119 A C ENAM Silent p.R326R 0.16 TCGA-V1-A9O9-01 5 54993715 54993715 A T SLC38A9 Silent p.P24P 0.19 TCGA-V1-A9O9-01 7 106515220 106515220 A G PIK3CG Missense_Mutation p.D788G 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-V1-A9O9-01 7 128493622 128493622 C A FLNC Missense_Mutation p.T2103N 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-V1-A9O9-01 7 30118250 30118250 G A PLEKHA8 Silent p.A469A 0.10 TCGA-V1-A9O9-01 8 109489050 109489050 T G EMC2 Missense_Mutation p.S211A 0.27 tolerated(1) benign(0.001) TCGA-V1-A9O9-01 9 140481540 140481540 C T ZMYND19 Missense_Mutation p.V80M 0.11 deleterious(0.03) benign(0.239) TCGA-V1-A9O9-01 9 21239506 21239506 C T IFNA14 Silent p.V143V 0.24 TCGA-V1-A9O9-01 X 125685734 125685734 G T DCAF12L1 Missense_Mutation p.F286L 0.30 tolerated(0.08) probably_damaging(0.998) TCGA-V1-A9OA-01 11 128642835 128642835 T C FLI1 Missense_Mutation p.Y182H 0.09 tolerated(0.12) probably_damaging(0.945) TCGA-V1-A9OA-01 12 52312898 52312898 C T ACVRL1 Missense_Mutation p.P459L 0.24 tolerated(0.05) benign(0.045) TCGA-V1-A9OA-01 16 814693 814693 A G MSLN Missense_Mutation p.D116G 0.23 deleterious(0.01) possibly_damaging(0.836) TCGA-V1-A9OA-01 17 20910248 20910248 A G USP22 Missense_Mutation p.F428S 0.14 deleterious(0) probably_damaging(0.997) TCGA-V1-A9OA-01 17 38935957 38935957 C T KRT27 Missense_Mutation p.E281K 0.23 tolerated(0.22) probably_damaging(0.999) TCGA-V1-A9OA-01 17 67246065 67246065 A G ABCA5 Silent p.S1582S 0.20 TCGA-V1-A9OA-01 19 18870928 18870928 C T CRTC1 Missense_Mutation p.P275L 0.26 deleterious(0) probably_damaging(1) TCGA-V1-A9OA-01 19 55748179 55748179 T C PPP6R1 Missense_Mutation p.N607S 0.30 tolerated(0.4) benign(0.018) TCGA-V1-A9OA-01 1 159174748 159174748 C G DARC 5'Flank 0.14 TCGA-V1-A9OA-01 21 46888241 46888241 C T COL18A1 Silent p.V244V 0.28 TCGA-V1-A9OA-01 2 10136062 10136062 T G GRHL1 Missense_Mutation p.S519A 0.23 tolerated(0.47) benign(0.013) TCGA-V1-A9OA-01 2 162865117 162865118 - G DPP4 Frame_Shift_Ins p.K648Qfs*16 0.28 TCGA-V1-A9OA-01 3 37032769 37032769 T - EPM2AIP1 Frame_Shift_Del p.E601Kfs*11 0.21 TCGA-V1-A9OA-01 3 38891950 38891950 T - SCN11A Intron 0.26 TCGA-V1-A9OA-01 3 47889821 47889821 G A DHX30 Missense_Mutation p.R813H 0.35 deleterious(0) possibly_damaging(0.881) TCGA-V1-A9OA-01 4 88583764 88583764 C G DMP1 Missense_Mutation p.D278E 0.36 tolerated(0.06) probably_damaging(0.949) TCGA-V1-A9OA-01 7 129962465 129962465 G A CPA4 Silent p.T405T 0.33 TCGA-V1-A9OA-01 7 135418752 135418752 G A FAM180A Missense_Mutation p.R165C 0.24 deleterious(0.02) possibly_damaging(0.799) TCGA-V1-A9OA-01 7 75070281 75070281 C A POM121C Missense_Mutation p.V60L 0.18 tolerated(0.09) benign(0.067) TCGA-V1-A9OA-01 8 145616370 145616370 C A ADCK5 Missense_Mutation p.P194T 0.11 deleterious(0.01) probably_damaging(0.939) TCGA-V1-A9OA-01 9 130868474 130868474 G A SLC25A25 Missense_Mutation p.E316K 0.09 deleterious(0.02) possibly_damaging(0.861) TCGA-V1-A9OA-01 X 152826170 152826170 C T ATP2B3 Missense_Mutation p.A959V 0.08 deleterious(0.05) probably_damaging(0.966) TCGA-V1-A9OF-01 10 70101423 70101423 G A HNRNPH3 Missense_Mutation p.G286E 0.25 deleterious(0.01) unknown(0) TCGA-V1-A9OF-01 14 78184773 78184773 G C SNW1 Missense_Mutation p.P450R 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-V1-A9OF-01 15 42035324 42035325 TA - MGA Frame_Shift_Del p.I1723Tfs*5 0.36 TCGA-V1-A9OF-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-V1-A9OF-01 17 60112846 60112846 T C MED13 Silent p.Q198Q 0.12 TCGA-V1-A9OF-01 1 11888182 11888182 C T CLCN6 Missense_Mutation p.A287V 0.04 deleterious(0) possibly_damaging(0.903) TCGA-V1-A9OF-01 1 226789755 226789755 G A C1orf95 3'UTR 0.13 TCGA-V1-A9OF-01 1 233482217 233482219 GAC - MLK4 In_Frame_Del p.D279del 0.33 TCGA-V1-A9OF-01 20 62364966 62364966 A G ZGPAT Missense_Mutation p.K249R 0.40 tolerated(0.08) benign(0.224) TCGA-V1-A9OF-01 2 54587362 54587362 G C C2orf73 Missense_Mutation p.R176T 0.27 tolerated(1) benign(0.005) TCGA-V1-A9OF-01 3 40465423 40465423 A C ENTPD3 Missense_Mutation p.E441A 0.29 tolerated(0.08) benign(0.046) TCGA-V1-A9OF-01 3 49693080 49693080 C T BSN Missense_Mutation p.R2031C 0.24 unknown(0) TCGA-V1-A9OF-01 3 9958950 9958950 G A IL17RC 5'UTR 0.33 TCGA-V1-A9OF-01 4 154544236 154544236 G A KIAA0922 Splice_Site p.X1349_splice 0.26 TCGA-V1-A9OF-01 5 176943192 176943192 G A DDX41 Missense_Mutation p.R101C 0.11 deleterious(0.05) possibly_damaging(0.548) TCGA-V1-A9OF-01 5 38942371 38942371 T A RICTOR 3'UTR 0.33 TCGA-V1-A9OF-01 X 50119074 50119074 G A DGKK RNA 0.09 TCGA-V1-A9OH-01 10 124920076 124920076 A G BUB3 Missense_Mutation p.K191E 0.30 tolerated(0.16) benign(0.006) TCGA-V1-A9OH-01 10 75530047 75530047 C T SEC24C Missense_Mutation p.P958S 0.19 tolerated(0.1) benign(0.001) TCGA-V1-A9OH-01 10 8051082 8051082 C T TAF3 Missense_Mutation p.A786V 0.09 tolerated_low_confidence(0.09) possibly_damaging(0.499) TCGA-V1-A9OH-01 10 95993938 95993938 C G PLCE1 Missense_Mutation p.L695V 0.05 deleterious(0) probably_damaging(0.987) TCGA-V1-A9OH-01 11 107200696 107200696 C T CWF19L2 Missense_Mutation p.G830E 0.33 deleterious(0) probably_damaging(1) TCGA-V1-A9OH-01 11 62414553 62414553 C G INTS5 Missense_Mutation p.G1000A 0.15 deleterious(0) probably_damaging(0.999) TCGA-V1-A9OH-01 11 70333013 70333013 C G SHANK2 Missense_Mutation p.E1130Q 0.07 deleterious(0.02) benign(0.083) TCGA-V1-A9OH-01 12 40012694 40012694 G T ABCD2 Missense_Mutation p.L242I 0.21 deleterious(0) probably_damaging(0.997) TCGA-V1-A9OH-01 12 52827742 52827742 C A KRT75 Missense_Mutation p.C116F 0.14 deleterious(0.04) possibly_damaging(0.716) TCGA-V1-A9OH-01 12 53608330 53608330 C T RARG Missense_Mutation p.S179N 0.07 tolerated(0.18) benign(0.012) TCGA-V1-A9OH-01 12 58020596 58020596 G A B4GALNT1 Silent p.D511D 0.22 TCGA-V1-A9OH-01 12 7805211 7805211 A G APOBEC1 Missense_Mutation p.S89P 0.14 deleterious(0.01) probably_damaging(1) TCGA-V1-A9OH-01 13 32903584 32903584 A - BRCA2 Frame_Shift_Del p.N213Mfs*17 0.28 TCGA-V1-A9OH-01 14 102675209 102675209 C T WDR20 Silent p.F265F 0.20 TCGA-V1-A9OH-01 14 22471453 22471453 C T TRAV18 Silent p.L2L 0.36 TCGA-V1-A9OH-01 14 25043530 25043530 C T CTSG Missense_Mutation p.C172Y 0.28 deleterious(0) probably_damaging(1) TCGA-V1-A9OH-01 14 66190944 66190944 G C FUT8 Missense_Mutation p.E388Q 0.22 tolerated(0.3) benign(0.298) TCGA-V1-A9OH-01 15 60806943 60806943 C T RORA Missense_Mutation p.R132K 0.21 deleterious(0) probably_damaging(0.999) TCGA-V1-A9OH-01 16 30516582 30516582 G A ITGAL Silent p.P751P 0.21 TCGA-V1-A9OH-01 17 38179489 38179489 A G MED24 Silent p.F715F 0.14 TCGA-V1-A9OH-01 17 7504806 7504806 A T FXR2 Missense_Mutation p.L194Q 0.06 deleterious(0) probably_damaging(0.995) TCGA-V1-A9OH-01 17 8218480 8218480 C T ARHGEF15 Missense_Mutation p.A382V 0.35 tolerated(0.1) benign(0.052) TCGA-V1-A9OH-01 18 5397070 5397070 T A EPB41L3 Missense_Mutation p.K943I 0.18 deleterious(0.01) possibly_damaging(0.594) TCGA-V1-A9OH-01 19 12244346 12244346 G A ZNF20 Nonsense_Mutation p.R219* 0.06 TCGA-V1-A9OH-01 1 186017954 186017954 A G HMCN1 Missense_Mutation p.Y2187C 0.11 probably_damaging(0.998) TCGA-V1-A9OH-01 1 196670523 196670523 G A CFH Intron 0.31 TCGA-V1-A9OH-01 1 248343434 248343434 C T OR2M2 Silent p.I49I 0.04 TCGA-V1-A9OH-01 1 32138057 32138057 A T COL16A1 Missense_Mutation p.L1022Q 0.05 unknown(0) TCGA-V1-A9OH-01 1 41466743 41466743 G C CTPS1 Missense_Mutation p.E350Q 0.29 tolerated(0.07) benign(0.021) TCGA-V1-A9OH-01 1 57406545 57406548 TGTA - C8B Frame_Shift_Del p.Y458Tfs*15 0.24 TCGA-V1-A9OH-01 20 33337295 33337304 CCCAAAATGG - NCOA6 Frame_Shift_Del p.H899* 0.13 TCGA-V1-A9OH-01 20 47605037 47605037 A G ARFGEF2 Missense_Mutation p.K791E 0.07 deleterious(0) possibly_damaging(0.868) TCGA-V1-A9OH-01 20 56735827 56735827 C T C20orf85 Silent p.C121C 0.39 TCGA-V1-A9OH-01 21 15882767 15882767 C A SAMSN1 Missense_Mutation p.C210F 0.09 tolerated(0.41) probably_damaging(0.996) TCGA-V1-A9OH-01 21 42613819 42613819 A G BACE2 Missense_Mutation p.Q231R 0.21 deleterious(0) probably_damaging(1) TCGA-V1-A9OH-01 2 120236398 120236398 G T SCTR Missense_Mutation p.T97N 0.30 tolerated(0.29) possibly_damaging(0.886) TCGA-V1-A9OH-01 2 89156907 89156907 G A IGKC Silent p.P97P 0.24 TCGA-V1-A9OH-01 3 108287155 108287155 T C KIAA1524 Missense_Mutation p.I374V 0.32 tolerated(0.13) benign(0.007) TCGA-V1-A9OH-01 3 112357581 112357581 G T CCDC80 Nonsense_Mutation p.S391* 0.10 TCGA-V1-A9OH-01 3 133099630 133099630 C - TMEM108 Frame_Shift_Del p.T360Pfs*51 0.10 TCGA-V1-A9OH-01 3 46244884 46244884 C A CCR1 Missense_Mutation p.R307S 0.19 deleterious(0) possibly_damaging(0.642) TCGA-V1-A9OH-01 3 64138975 64138975 C T PRICKLE2 Missense_Mutation p.E224K 0.17 deleterious(0) probably_damaging(0.952) TCGA-V1-A9OH-01 4 155487688 155487688 A G FGB Silent p.Q118Q 0.10 TCGA-V1-A9OH-01 5 140214233 140214233 C T PCDHA7 Missense_Mutation p.R89W 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.711) TCGA-V1-A9OH-01 5 140476345 140476345 C T PCDHB2 Silent p.T657T 0.04 TCGA-V1-A9OH-01 5 160047362 160047362 G - ATP10B Frame_Shift_Del p.P803Qfs*13 0.15 TCGA-V1-A9OH-01 5 45267208 45267208 T C HCN1 Missense_Mutation p.D589G 0.07 deleterious(0) probably_damaging(0.991) TCGA-V1-A9OH-01 6 116833239 116833239 G C FAM26E Missense_Mutation p.C127S 0.06 deleterious(0) probably_damaging(1) TCGA-V1-A9OH-01 6 160198397 160198397 T G ACAT2 Missense_Mutation p.L274R 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-V1-A9OH-01 6 29342088 29342088 T A OR12D3 3'UTR 0.30 TCGA-V1-A9OH-01 6 30865883 30865883 C T DDR1 Silent p.I756I 0.12 TCGA-V1-A9OH-01 6 32159588 32159588 C A GPSM3 Missense_Mutation p.R81S 0.11 deleterious(0) probably_damaging(0.966) TCGA-V1-A9OH-01 6 43271915 43271915 G A SLC22A7 Missense_Mutation p.A509T 0.26 tolerated(0.09) benign(0.052) TCGA-V1-A9OH-01 6 7583265 7583266 AC - DSP Frame_Shift_Del p.Q1925Vfs*15 0.13 TCGA-V1-A9OH-01 7 2297433 2297433 C A SNX8 Missense_Mutation p.K307N 0.20 tolerated(0.24) benign(0.347) TCGA-V1-A9OH-01 7 99998887 99998887 C T ZCWPW1 Missense_Mutation p.R566K 0.20 tolerated(0.42) benign(0.01) TCGA-V1-A9OH-01 8 141570542 141570542 G A AGO2 Nonsense_Mutation p.R196* 0.12 TCGA-V1-A9OH-01 8 98736848 98736848 G C MTDH Missense_Mutation p.E567Q 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-V1-A9OH-01 9 32457378 32457378 T C DDX58 Silent p.E840E 0.08 TCGA-V1-A9OH-01 9 90535736 90535736 T A SPATA31C1 RNA 0.27 TCGA-V1-A9OH-01 X 112024248 112024248 G A AMOT Missense_Mutation p.S780L 0.05 unknown(0) TCGA-V1-A9OH-01 X 14599376 14599383 TGACTCCC - GLRA2 Frame_Shift_Del p.D115Gfs*20 0.45 TCGA-V1-A9OH-01 X 147733566 147733566 C A AFF2 Silent p.R32R 0.51 TCGA-V1-A9OH-01 X 1508388 1508388 C A SLC25A6 Missense_Mutation p.G115V 0.23 tolerated(0.06) probably_damaging(0.986) TCGA-V1-A9OH-01 X 1508390 1508390 C G SLC25A6 Silent p.A114A 0.23 TCGA-V1-A9OH-01 X 18912456 18912456 C T PHKA2 Missense_Mutation p.E1135K 0.08 deleterious(0) probably_damaging(0.999) TCGA-V1-A9OH-01 X 37641374 37641374 G C CYBB Missense_Mutation p.V27L 0.09 tolerated(0.15) benign(0.003) TCGA-V1-A9OH-01 X 69458062 69458062 G T AWAT1 Missense_Mutation p.G154V 0.17 deleterious(0) probably_damaging(0.975) TCGA-V1-A9OL-01 10 52619638 52619638 G A A1CF 5'UTR 0.49 TCGA-V1-A9OL-01 11 60971014 60971014 C A PGA3 5'UTR 0.17 TCGA-V1-A9OL-01 11 65267849 65267852 ATTA - MALAT1 RNA 0.25 TCGA-V1-A9OL-01 11 72006547 72006547 G A CLPB Missense_Mutation p.A522V 0.06 tolerated(0.09) benign(0.261) TCGA-V1-A9OL-01 12 124856836 124856836 C T NCOR2 Missense_Mutation p.A847T 0.24 possibly_damaging(0.709) TCGA-V1-A9OL-01 12 2909556 2909556 A G FKBP4 Splice_Site p.X283_splice 0.47 TCGA-V1-A9OL-01 12 41323722 41323722 C A CNTN1 Silent p.G207G 0.24 TCGA-V1-A9OL-01 12 52448435 52448435 T G NR4A1 Missense_Mutation p.V121G 0.22 tolerated(0.06) benign(0.406) TCGA-V1-A9OL-01 12 52884407 52884407 A G KRT6A Silent p.Y341Y 0.09 TCGA-V1-A9OL-01 13 92380805 92380805 G A GPC5 Missense_Mutation p.R347H 0.40 tolerated(0.76) benign(0.002) TCGA-V1-A9OL-01 15 91513730 91513730 G T PRC1 Silent p.T492T 0.05 TCGA-V1-A9OL-01 16 72984599 72984599 G C ZFHX3 Silent p.L995L 0.50 TCGA-V1-A9OL-01 16 77859293 77859293 C T VAT1L Silent p.L172L 0.56 TCGA-V1-A9OL-01 17 35538216 35538216 G C ACACA Missense_Mutation p.L1620V 0.36 deleterious(0) probably_damaging(0.961) TCGA-V1-A9OL-01 17 80019841 80019841 G A DUS1L Missense_Mutation p.R177C 0.40 deleterious(0.01) probably_damaging(0.978) TCGA-V1-A9OL-01 19 15904883 15904883 G A OR10H5 Missense_Mutation p.V9M 0.43 tolerated(0.06) benign(0.016) TCGA-V1-A9OL-01 19 23328789 23328789 G A ZNF730 Missense_Mutation p.E315K 0.27 tolerated(0.12) benign(0.312) TCGA-V1-A9OL-01 19 35512475 35512475 G A GRAMD1A Silent p.S515S 0.37 TCGA-V1-A9OL-01 19 4168365 4168365 G T CREB3L3 Silent p.L244L 0.12 TCGA-V1-A9OL-01 19 49910161 49910161 G A CCDC155 Missense_Mutation p.E273K 0.27 deleterious(0) benign(0.249) TCGA-V1-A9OL-01 19 8196684 8196684 A T FBN3 Missense_Mutation p.C582S 0.43 deleterious(0) benign(0.422) TCGA-V1-A9OL-01 1 158632635 158632635 C T SPTA1 Missense_Mutation p.R774Q 0.42 tolerated(0.06) benign(0.036) TCGA-V1-A9OL-01 1 175334155 175334155 T C TNR Missense_Mutation p.I860V 0.45 tolerated(0.84) benign(0.006) TCGA-V1-A9OL-01 1 220300180 220300180 T G IARS2 Missense_Mutation p.L611R 0.56 deleterious(0) probably_damaging(0.978) TCGA-V1-A9OL-01 1 26371585 26371585 A G SLC30A2 Silent p.G58G 0.32 TCGA-V1-A9OL-01 20 18794834 18794834 G A SCP2D1 Silent p.P125P 0.06 TCGA-V1-A9OL-01 20 39991122 39991122 G A EMILIN3 Missense_Mutation p.R363C 0.17 deleterious(0) probably_damaging(0.98) TCGA-V1-A9OL-01 20 42354963 42354963 C A GTSF1L Missense_Mutation p.K124N 0.41 tolerated(0.21) possibly_damaging(0.776) TCGA-V1-A9OL-01 22 29750667 29750667 G A AP1B1 Missense_Mutation p.R304C 0.59 deleterious(0) probably_damaging(0.999) TCGA-V1-A9OL-01 2 128335755 128335755 C T MYO7B Silent p.A299A 0.25 TCGA-V1-A9OL-01 2 211179863 211179863 C A MYL1 5'UTR 0.34 TCGA-V1-A9OL-01 2 242757477 242757477 T A NEU4 Nonsense_Mutation p.C199* 0.36 TCGA-V1-A9OL-01 3 37792013 37792013 C G ITGA9 Missense_Mutation p.R832G 0.29 tolerated(0.17) probably_damaging(0.996) TCGA-V1-A9OL-01 4 114251469 114251469 C T ANK2 Nonsense_Mutation p.R990* 0.26 TCGA-V1-A9OL-01 5 115298662 115298662 G T AQPEP Missense_Mutation p.R116S 0.39 tolerated(0.16) benign(0.077) TCGA-V1-A9OL-01 5 131722816 131722816 G T SLC22A5 Silent p.V308V 0.04 TCGA-V1-A9OL-01 5 156592716 156592716 C A FAM71B Missense_Mutation p.C155F 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-V1-A9OL-01 6 29556680 29556680 C T OR2H2 3'UTR 0.14 TCGA-V1-A9OL-01 6 55932100 55932100 C A COL21A1 Missense_Mutation p.G707V 0.37 deleterious(0) probably_damaging(1) TCGA-V1-A9OL-01 7 90356069 90356069 G T CDK14 Missense_Mutation p.K86N 0.34 deleterious(0.01) benign(0.197) TCGA-V1-A9OL-01 8 128428597 128428597 T G POU5F1B Nonsense_Mutation p.Y162* 0.16 TCGA-V1-A9OL-01 9 19063090 19063090 A T HAUS6 Missense_Mutation p.N515K 0.40 tolerated(0.23) benign(0.318) TCGA-V1-A9OL-01 9 5021963 5021963 G A JAK2 Intron 0.62 TCGA-V1-A9OL-01 X 111156017 111156017 C A TRPC5 Silent p.T134T 0.15 TCGA-V1-A9OL-01 X 8536357 8536357 G A KAL1 Nonsense_Mutation p.Q375* 0.41 TCGA-V1-A9OQ-01 10 75561146 75561146 C T ZSWIM8 Missense_Mutation p.R1800C 0.06 deleterious(0) probably_damaging(0.942) TCGA-V1-A9OQ-01 10 92660334 92660334 A G RPP30 Silent p.R235R 0.31 TCGA-V1-A9OQ-01 10 98711871 98711871 G C LCOR Missense_Mutation p.D84H 0.27 deleterious(0) possibly_damaging(0.907) TCGA-V1-A9OQ-01 11 106810741 106810741 C G GUCY1A2 Missense_Mutation p.Q217H 0.23 tolerated(0.06) possibly_damaging(0.689) TCGA-V1-A9OQ-01 11 55735784 55735784 A C OR10AG1 Missense_Mutation p.F52L 0.34 deleterious(0.01) benign(0.184) TCGA-V1-A9OQ-01 12 104186976 104186976 C T NT5DC3 Missense_Mutation p.A329T 0.32 deleterious(0) probably_damaging(0.995) TCGA-V1-A9OQ-01 12 12870888 12870888 G T CDKN1B Nonsense_Mutation p.E39* 0.06 TCGA-V1-A9OQ-01 12 32886660 32886660 A T DNM1L Missense_Mutation p.L486F 0.09 deleterious(0) possibly_damaging(0.839) TCGA-V1-A9OQ-01 13 41654831 41654831 A - WBP4 Frame_Shift_Del p.S271Vfs*8 0.32 TCGA-V1-A9OQ-01 14 38061191 38061191 G T FOXA1 Missense_Mutation p.F266L 0.25 deleterious(0) probably_damaging(0.983) TCGA-V1-A9OQ-01 14 94674828 94674828 T G PPP4R4 Missense_Mutation p.S73R 0.19 deleterious(0) probably_damaging(0.996) TCGA-V1-A9OQ-01 16 30410427 30410427 G T ZNF48 Nonstop_Mutation p.*619Lext*19 0.12 TCGA-V1-A9OQ-01 17 37006327 37006327 C T RPL23 3'UTR 0.10 TCGA-V1-A9OQ-01 17 42828594 42828594 C T DBF4B Silent p.C607C 0.10 TCGA-V1-A9OQ-01 19 11596494 11596494 C T ZNF653 Missense_Mutation p.R516Q 0.08 deleterious(0.02) probably_damaging(0.978) TCGA-V1-A9OQ-01 19 50862276 50862276 C T NAPSA Missense_Mutation p.V343I 0.07 tolerated(0.39) probably_damaging(0.999) TCGA-V1-A9OQ-01 19 9296635 9296635 T A OR7D2 Missense_Mutation p.Y60N 0.38 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-V1-A9OQ-01 1 11190607 11190607 C T MTOR Silent p.P1864P 0.08 TCGA-V1-A9OQ-01 1 111996955 111996955 T - ATP5F1 Frame_Shift_Del p.Y68Ifs*6 0.30 TCGA-V1-A9OQ-01 1 12943195 12943195 A G PRAMEF4 Silent p.T7T 0.10 TCGA-V1-A9OQ-01 1 149858550 149858550 G T HIST2H2AC Missense_Mutation p.G9V 0.05 tolerated_low_confidence(0.07) unknown(0) TCGA-V1-A9OQ-01 1 155735616 155735617 - G GON4L Frame_Shift_Ins p.I1217Yfs*6 0.21 TCGA-V1-A9OQ-01 1 160395042 160395042 A G VANGL2 Silent p.L480L 0.24 TCGA-V1-A9OQ-01 1 205197784 205197784 C T TMCC2 Missense_Mutation p.A31V 0.13 tolerated_low_confidence(0.56) benign(0.005) TCGA-V1-A9OQ-01 1 34038130 34038130 G A CSMD2 Missense_Mutation p.R2582C 0.14 tolerated(0.06) possibly_damaging(0.505) TCGA-V1-A9OQ-01 1 43913641 43913641 C T SZT2 Missense_Mutation p.R3131W 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-V1-A9OQ-01 20 2381056 2381056 C T TGM6 Missense_Mutation p.R319W 0.10 tolerated(0.06) benign(0.168) TCGA-V1-A9OQ-01 20 25456887 25456887 C A NINL Missense_Mutation p.V1014L 0.06 tolerated(0.47) benign(0) TCGA-V1-A9OQ-01 20 35833198 35833198 G A RPN2 Missense_Mutation p.G195E 0.05 deleterious(0.02) probably_damaging(1) TCGA-V1-A9OQ-01 21 47641788 47641788 C T LSS Missense_Mutation p.R177Q 0.32 deleterious(0) probably_damaging(0.985) TCGA-V1-A9OQ-01 2 166626873 166626873 C T GALNT3 Missense_Mutation p.R113H 0.09 deleterious(0) probably_damaging(0.998) TCGA-V1-A9OQ-01 2 40656809 40656809 G T SLC8A1 Missense_Mutation p.F204L 0.36 deleterious(0) probably_damaging(1) TCGA-V1-A9OQ-01 2 40656834 40656834 C G SLC8A1 Missense_Mutation p.R196T 0.33 deleterious(0) probably_damaging(1) TCGA-V1-A9OQ-01 2 64323320 64323320 G A PELI1 Missense_Mutation p.S210L 0.25 deleterious(0) probably_damaging(0.97) TCGA-V1-A9OQ-01 2 74274785 74274785 A C TET3 Missense_Mutation p.K446Q 0.31 tolerated(0.1) probably_damaging(0.919) TCGA-V1-A9OQ-01 3 110845029 110845029 A G PVRL3 Splice_Site p.X306_splice 0.09 TCGA-V1-A9OQ-01 3 14163560 14163560 T G CHCHD4 5'UTR 0.39 TCGA-V1-A9OQ-01 3 151165044 151165044 T C IGSF10 Missense_Mutation p.M909V 0.05 tolerated(0.55) benign(0.001) TCGA-V1-A9OQ-01 3 47161880 47161880 C A SETD2 Nonsense_Mutation p.E1416* 0.30 TCGA-V1-A9OQ-01 3 72873608 72873608 T C SHQ1 Missense_Mutation p.K232E 0.42 tolerated(0.66) benign(0.006) TCGA-V1-A9OQ-01 4 169204662 169204662 T C DDX60 Missense_Mutation p.I553V 0.12 tolerated(1) benign(0) TCGA-V1-A9OQ-01 5 5239847 5239847 G C ADAMTS16 Missense_Mutation p.E778Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-V1-A9OQ-01 6 125584048 125584048 C G TPD52L1 Silent p.A185A 0.31 TCGA-V1-A9OQ-01 6 128306873 128306873 G C PTPRK Missense_Mutation p.H1088D 0.33 deleterious(0) probably_damaging(0.993) TCGA-V1-A9OQ-01 6 137476210 137476210 G T IL22RA2 Missense_Mutation p.Q114K 0.25 tolerated(0.2) possibly_damaging(0.507) TCGA-V1-A9OQ-01 6 152461140 152461140 C T SYNE1 Missense_Mutation p.R8468H 0.17 benign(0.009) TCGA-V1-A9OQ-01 6 31630284 31630284 C T GPANK1 Missense_Mutation p.R277Q 0.36 tolerated(0.4) benign(0.033) TCGA-V1-A9OQ-01 6 35437188 35437188 T A RPL10A Silent p.S64S 0.29 TCGA-V1-A9OQ-01 7 7635987 7635987 T A MIOS Missense_Mutation p.S766T 0.26 tolerated(0.76) benign(0.084) TCGA-V1-A9OQ-01 7 86415592 86415592 C T GRM3 Missense_Mutation p.R162W 0.11 deleterious(0) probably_damaging(1) TCGA-V1-A9OQ-01 8 143781999 143781999 C T LY6K Silent p.D18D 0.31 TCGA-V1-A9OQ-01 8 145726659 145726659 C T PPP1R16A Silent p.L395L 0.29 TCGA-V1-A9OQ-01 9 120474878 120474878 G T TLR4 Missense_Mutation p.A158S 0.21 tolerated(0.14) probably_damaging(0.994) TCGA-V1-A9OQ-01 9 21026653 21026653 T C PTPLAD2 Missense_Mutation p.E71G 0.06 deleterious(0) probably_damaging(1) TCGA-V1-A9OQ-01 9 35800721 35800721 T G NPR2 Missense_Mutation p.S412A 0.22 tolerated(0.42) benign(0.017) TCGA-V1-A9OQ-01 9 91657077 91657077 C T SHC3 Silent p.T408T 0.20 TCGA-V1-A9OQ-01 X 8555966 8555966 G A KAL1 Nonsense_Mutation p.Q199* 0.71 TCGA-V1-A9OQ-01 X 91133932 91133932 G A PCDH11X Missense_Mutation p.S898N 0.51 tolerated(1) benign(0.001) TCGA-V1-A9OT-01 10 105191973 105191974 - A PDCD11 Frame_Shift_Ins p.T1153Nfs*15 0.28 TCGA-V1-A9OT-01 12 113448256 113448256 A T OAS2 Missense_Mutation p.R709S 0.33 tolerated_low_confidence(0.07) benign(0.026) TCGA-V1-A9OT-01 12 4919742 4919742 G A KCNA6 Missense_Mutation p.V179I 0.43 tolerated(0.3) probably_damaging(0.987) TCGA-V1-A9OT-01 12 57435234 57435234 G A MYO1A Silent p.Y382Y 0.40 TCGA-V1-A9OT-01 13 101707583 101707583 A T NALCN 3'UTR 0.22 TCGA-V1-A9OT-01 13 113719371 113719371 C T MCF2L Missense_Mutation p.A243V 0.07 tolerated(0.41) benign(0.008) TCGA-V1-A9OT-01 13 29598982 29598982 C T MTUS2 Silent p.D59D 0.24 TCGA-V1-A9OT-01 14 93708856 93708856 G A BTBD7 Silent p.V1054V 0.34 TCGA-V1-A9OT-01 15 34628938 34628938 C T SLC12A6 5'UTR 0.10 TCGA-V1-A9OT-01 15 49288743 49288743 C T SECISBP2L Missense_Mutation p.R815K 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-V1-A9OT-01 15 63446088 63446088 C A RPS27L 3'UTR 0.24 TCGA-V1-A9OT-01 16 71961724 71961724 A C IST1 3'UTR 0.39 TCGA-V1-A9OT-01 17 12656007 12656007 G A MYOCD Missense_Mutation p.A468T 0.32 tolerated(0.27) benign(0.016) TCGA-V1-A9OT-01 17 21094518 21094518 T C DHRS7B 3'UTR 0.38 TCGA-V1-A9OT-01 17 56349039 56349039 G A MPO Silent p.F669F 0.29 TCGA-V1-A9OT-01 18 77895268 77895268 G A ADNP2 Missense_Mutation p.G658S 0.06 tolerated(1) benign(0.004) TCGA-V1-A9OT-01 19 52383622 52383622 G A ZNF577 Missense_Mutation p.T5M 0.42 tolerated_low_confidence(0.06) benign(0.023) TCGA-V1-A9OT-01 1 15894757 15894757 A G DNAJC16 3'UTR 0.29 TCGA-V1-A9OT-01 1 18153059 18153059 C T ACTL8 3'UTR 0.55 TCGA-V1-A9OT-01 1 28365380 28365380 T C EYA3 Missense_Mutation p.N65S 0.37 tolerated(1) benign(0.014) TCGA-V1-A9OT-01 1 53679183 53679183 C A CPT2 Silent p.R631R 0.55 TCGA-V1-A9OT-01 20 60419780 60419780 C T CDH4 Silent p.G211G 0.26 TCGA-V1-A9OT-01 2 163241399 163241399 G T KCNH7 Missense_Mutation p.Q921K 0.36 tolerated(0.78) benign(0.002) TCGA-V1-A9OT-01 2 25982350 25982350 C T ASXL2 Splice_Site p.X313_splice 0.32 TCGA-V1-A9OT-01 4 154624745 154624745 T C TLR2 Missense_Mutation p.L229P 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-V1-A9OT-01 4 187540699 187540699 G A FAT1 Silent p.T2347T 0.39 TCGA-V1-A9OT-01 5 125887739 125887739 G C ALDH7A1 Missense_Mutation p.P431A 0.15 deleterious(0) probably_damaging(1) TCGA-V1-A9OT-01 5 150029733 150029733 G T SYNPO Silent p.L876L 0.35 TCGA-V1-A9OT-01 5 9066665 9066665 C T SEMA5A Missense_Mutation p.G723S 0.12 tolerated(0.12) probably_damaging(0.999) TCGA-V1-A9OT-01 7 151945083 151945083 C T KMT2C Missense_Mutation p.M812I 0.10 benign(0.027) TCGA-V1-A9OT-01 7 96653671 96653671 C T DLX5 Missense_Mutation p.A89T 0.39 tolerated(0.35) possibly_damaging(0.892) TCGA-V1-A9OT-01 8 17573324 17573324 G C MTUS1 Missense_Mutation p.P846A 0.41 tolerated(0.23) benign(0.2) TCGA-V1-A9OT-01 8 18432657 18432665 CCCTCCAGT - PSD3 In_Frame_Del p.D871_R873del 0.13 TCGA-V1-A9OT-01 8 21767171 21767171 C T DOK2 Missense_Mutation p.G297E 0.31 deleterious(0.02) probably_damaging(0.961) TCGA-V1-A9OT-01 8 95680237 95680237 G A ESRP1 Missense_Mutation p.R331Q 0.26 deleterious(0) probably_damaging(1) TCGA-V1-A9OT-01 8 98817641 98817641 A G LAPTM4B Missense_Mutation p.N145D 0.35 tolerated(0.1) benign(0.005) TCGA-V1-A9OT-01 9 26905499 26905499 T C PLAA 3'UTR 0.40 TCGA-V1-A9OX-01 10 64136655 64136655 C T ZNF365 Missense_Mutation p.R235C 0.20 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-V1-A9OX-01 11 111368082 111368082 C G BTG4 Missense_Mutation p.E122Q 0.15 deleterious(0.04) possibly_damaging(0.544) TCGA-V1-A9OX-01 11 55371016 55371016 G T OR4C11 Silent p.P278P 0.23 TCGA-V1-A9OX-01 11 5686494 5686494 T A TRIM5 Missense_Mutation p.N343Y 0.19 tolerated(0.07) benign(0.001) TCGA-V1-A9OX-01 12 109874335 109874335 G C MYO1H Missense_Mutation p.R712T 0.31 tolerated(0.31) probably_damaging(0.917) TCGA-V1-A9OX-01 12 69981294 69981294 C A CCT2 Missense_Mutation p.L52I 0.13 deleterious(0.01) probably_damaging(0.916) TCGA-V1-A9OX-01 12 9230011 9230011 T G A2M Silent p.G1094G 0.25 TCGA-V1-A9OX-01 13 37453545 37453545 G A SMAD9 Silent p.R94R 0.24 TCGA-V1-A9OX-01 14 94089082 94089082 C G UNC79 Missense_Mutation p.P1658A 0.14 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-V1-A9OX-01 16 30094161 30094161 C T PPP4C Missense_Mutation p.A99V 0.07 deleterious(0.04) possibly_damaging(0.907) TCGA-V1-A9OX-01 16 30937167 30937167 G A FBXL19 Missense_Mutation p.G51E 0.31 deleterious(0) probably_damaging(0.996) TCGA-V1-A9OX-01 17 10295860 10295860 T C MYH8 Missense_Mutation p.Q1856R 0.06 deleterious(0) possibly_damaging(0.794) TCGA-V1-A9OX-01 17 42428524 42428524 G A GRN Silent p.A276A 0.19 TCGA-V1-A9OX-01 17 47696438 47696438 T C SPOP Missense_Mutation p.K129E 0.04 tolerated(0.12) probably_damaging(0.997) TCGA-V1-A9OX-01 19 10692007 10692007 A C AP1M2 Missense_Mutation p.F203C 0.23 tolerated(0.06) possibly_damaging(0.895) TCGA-V1-A9OX-01 19 31768395 31768395 G A TSHZ3 Silent p.P768P 0.22 TCGA-V1-A9OX-01 1 109742748 109742748 T G KIAA1324 Missense_Mutation p.V899G 0.09 deleterious(0.02) possibly_damaging(0.9) TCGA-V1-A9OX-01 1 1250305 1250305 T A CPSF3L Missense_Mutation p.I207F 0.16 deleterious(0) probably_damaging(0.997) TCGA-V1-A9OX-01 1 149885042 149885042 C T SV2A Silent p.A117A 0.15 TCGA-V1-A9OX-01 21 42843897 42843899 TTG - TMPRSS2 In_Frame_Del p.N341del 0.26 TCGA-V1-A9OX-01 2 211518758 211518758 G A CPS1 Missense_Mutation p.V1170M 0.16 deleterious(0) probably_damaging(1) TCGA-V1-A9OX-01 3 121994724 121994724 G A CASR Silent p.E481E 0.24 TCGA-V1-A9OX-01 3 134977925 134977925 G C EPHB1 Missense_Mutation p.R973T 0.20 deleterious(0.04) probably_damaging(0.939) TCGA-V1-A9OX-01 4 870995 870995 C T GAK Silent p.R619R 0.24 TCGA-V1-A9OX-01 5 140530897 140530897 C T PCDHB6 Silent p.L353L 0.20 TCGA-V1-A9OX-01 6 33411088 33411088 A C SYNGAP1 Missense_Mutation p.Q920P 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-V1-A9OX-01 6 85472370 85472370 C G TBX18 Missense_Mutation p.G130A 0.24 tolerated(0.71) benign(0.005) TCGA-V1-A9OX-01 7 151874265 151874265 G A KMT2C Missense_Mutation p.A2758V 0.07 probably_damaging(0.999) TCGA-V1-A9OX-01 8 55537426 55537426 C T RP1 Silent p.D328D 0.07 TCGA-V1-A9OX-01 X 153216312 153216312 C T HCFC1 Silent p.T1885T 0.43 TCGA-V1-A9OX-01 Y 24457097 24457097 G A RBMY2FP RNA 0.10 TCGA-V1-A9OY-01 10 121591577 121591577 G A MCMBP Silent p.N583N 0.17 TCGA-V1-A9OY-01 10 13325695 13325695 G A PHYH Missense_Mutation p.R275W 0.14 deleterious(0) probably_damaging(0.999) TCGA-V1-A9OY-01 11 85374816 85374816 G A CREBZF 3'UTR 0.14 TCGA-V1-A9OY-01 14 67555762 67555762 G A GPHN Missense_Mutation p.A403T 0.29 deleterious(0) possibly_damaging(0.832) TCGA-V1-A9OY-01 14 69521532 69521532 T C DCAF5 Missense_Mutation p.D624G 0.11 deleterious_low_confidence(0) possibly_damaging(0.842) TCGA-V1-A9OY-01 15 31283716 31283716 G A MTMR10 5'UTR 0.28 TCGA-V1-A9OY-01 17 26106045 26106045 C T NOS2 Missense_Mutation p.A348T 0.28 deleterious(0.03) possibly_damaging(0.478) TCGA-V1-A9OY-01 17 64880940 64880940 C A CACNG5 Intron 0.28 TCGA-V1-A9OY-01 17 80195392 80195392 T C SLC16A3 Missense_Mutation p.V249A 0.17 deleterious(0) probably_damaging(0.927) TCGA-V1-A9OY-01 19 14043545 14043545 G A PODNL1 Silent p.H504H 0.05 TCGA-V1-A9OY-01 19 14866467 14866467 C T EMR2 Missense_Mutation p.R472H 0.15 tolerated(0.61) benign(0.001) TCGA-V1-A9OY-01 1 16257885 16257885 C T SPEN Missense_Mutation p.A1717V 0.18 benign(0.001) TCGA-V1-A9OY-01 1 36641841 36641841 G A MAP7D1 Missense_Mutation p.D298N 0.36 probably_damaging(0.994) TCGA-V1-A9OY-01 2 239181795 239181795 C G PER2 Missense_Mutation p.E162D 0.08 tolerated(1) benign(0.012) TCGA-V1-A9OY-01 3 33557515 33557515 C T CLASP2 Silent p.E1378E 0.21 TCGA-V1-A9OY-01 3 49759417 49759417 C T GMPPB Missense_Mutation p.R311H 0.19 tolerated(0.34) benign(0.049) TCGA-V1-A9OY-01 3 52720844 52720844 G T GNL3 Splice_Site p.X24_splice 0.19 TCGA-V1-A9OY-01 3 52720845 52720845 T C GNL3 Splice_Site p.X24_splice 0.19 TCGA-V1-A9OY-01 5 58147180 58147180 G T RAB3C 3'UTR 0.12 TCGA-V1-A9OY-01 6 130387569 130387569 C T L3MBTL3 Silent p.D312D 0.18 TCGA-V1-A9OY-01 6 87725081 87725081 C T HTR1E Missense_Mutation p.A10V 0.25 tolerated(0.28) benign(0.01) TCGA-V1-A9OY-01 8 94934324 94934324 C G PDP1 Missense_Mutation p.R38G 0.15 deleterious_low_confidence(0.02) benign(0.129) TCGA-V1-A9OY-01 9 20414352 20414352 G A MLLT3 Silent p.S164S 0.09 TCGA-V1-A9OY-01 X 76938946 76938956 TTAATTGGGGA - ATRX Frame_Shift_Del p.S598Rfs*3 0.40 TCGA-V1-A9Z7-01 10 95518093 95518093 C G LGI1 Silent p.T64T 0.08 TCGA-V1-A9Z7-01 11 105880318 105880318 G A MSANTD4 Missense_Mutation p.R328C 0.19 deleterious(0) probably_damaging(0.996) TCGA-V1-A9Z7-01 11 66190206 66190206 C A NPAS4 Missense_Mutation p.N164K 0.31 deleterious(0.01) probably_damaging(0.982) TCGA-V1-A9Z7-01 12 69666935 69666935 G A CPSF6 3'UTR 0.12 TCGA-V1-A9Z7-01 14 21109704 21109704 C G OR6S1 Silent p.G49G 0.27 TCGA-V1-A9Z7-01 14 74186068 74186069 - T ELMSAN1 Frame_Shift_Ins p.T1025Nfs*6 0.24 TCGA-V1-A9Z7-01 15 74703250 74703250 G A SEMA7A Silent p.H572H 0.20 TCGA-V1-A9Z7-01 15 78786337 78786337 T - IREB2 Frame_Shift_Del p.F805Lfs*21 0.26 TCGA-V1-A9Z7-01 15 90258216 90258216 G A WDR93 Missense_Mutation p.G216R 0.21 deleterious(0.03) probably_damaging(0.989) TCGA-V1-A9Z7-01 16 31143854 31143854 A T PRSS8 Missense_Mutation p.C201S 0.27 deleterious(0) probably_damaging(1) TCGA-V1-A9Z7-01 17 40818390 40818390 T G TUBG2 Missense_Mutation p.I349S 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-V1-A9Z7-01 17 7577498 7577508 CCTGGAGTCTT - TP53 Splice_Site p.X258_splice 0.39 TCGA-V1-A9Z7-01 19 15276799 15276799 G A NOTCH3 Silent p.S1822S 0.31 TCGA-V1-A9Z7-01 19 23544340 23544340 T C ZNF91 Missense_Mutation p.K481E 0.30 tolerated(0.07) probably_damaging(0.95) TCGA-V1-A9Z7-01 19 4694806 4694806 T C DPP9 Silent p.Q461Q 0.42 TCGA-V1-A9Z7-01 1 14108529 14108529 G C PRDM2 Silent p.S1413S 0.35 TCGA-V1-A9Z7-01 1 241671932 241671932 G T FH Missense_Mutation p.Q237K 0.07 deleterious(0) probably_damaging(0.983) TCGA-V1-A9Z7-01 1 36307352 36307352 G A AGO4 Splice_Site p.X725_splice 0.19 TCGA-V1-A9Z7-01 20 207948 207948 A G DEFB129 Missense_Mutation p.I7V 0.12 tolerated(0.18) benign(0.1) TCGA-V1-A9Z7-01 20 49557452 49557452 T A DPM1 Missense_Mutation p.L171F 0.29 tolerated(0.1) possibly_damaging(0.588) TCGA-V1-A9Z7-01 2 136567051 136567051 A C LCT Missense_Mutation p.Y956D 0.31 deleterious(0) probably_damaging(1) TCGA-V1-A9Z7-01 2 212293169 212293169 T C ERBB4 Missense_Mutation p.R895G 0.22 tolerated(0.06) benign(0.179) TCGA-V1-A9Z7-01 2 220098130 220098130 G A ANKZF1 Missense_Mutation p.R265H 0.31 deleterious(0.01) possibly_damaging(0.516) TCGA-V1-A9Z7-01 2 225371708 225371708 A C CUL3 Missense_Mutation p.M299R 0.26 deleterious(0) probably_damaging(0.936) TCGA-V1-A9Z7-01 3 188242556 188242556 A G LPP Missense_Mutation p.Y137C 0.21 deleterious(0) probably_damaging(0.999) TCGA-V1-A9Z7-01 3 42751216 42751216 C G CCDC13 Missense_Mutation p.D650H 0.06 deleterious(0.04) benign(0.012) TCGA-V1-A9Z7-01 3 46415244 46415244 C G CCR5 Missense_Mutation p.T284S 0.09 tolerated(0.1) benign(0.078) TCGA-V1-A9Z7-01 5 161324535 161324535 A T GABRA1 3'UTR 0.23 TCGA-V1-A9Z7-01 5 175843373 175843373 C G CLTB 5'UTR 0.23 TCGA-V1-A9Z7-01 6 116263608 116263608 G A FRK Missense_Mutation p.S496L 0.24 tolerated(0.05) benign(0.005) TCGA-V1-A9Z7-01 6 30593484 30593484 C T MRPS18B Silent p.G229G 0.16 TCGA-V1-A9Z7-01 6 5369234 5369234 A G FARS2 Missense_Mutation p.Y144C 0.30 deleterious(0) probably_damaging(1) TCGA-V1-A9Z7-01 7 48411971 48411972 - T ABCA13 Frame_Shift_Ins p.S3673Qfs*4 0.10 TCGA-V1-A9Z7-01 8 41615618 41615618 G A ANK1 Missense_Mutation p.S55L 0.03 deleterious(0) possibly_damaging(0.767) TCGA-V1-A9Z7-01 9 116931620 116931620 G A COL27A1 Silent p.A595A 0.29 TCGA-V1-A9Z7-01 9 135730299 135730299 G A AK8 Missense_Mutation p.A116V 0.31 tolerated(0.22) benign(0.021) TCGA-V1-A9Z7-01 9 139925558 139925558 G A FUT7 Silent p.C211C 0.09 TCGA-V1-A9Z8-01 10 106075183 106075183 G T ITPRIP Missense_Mutation p.H209Q 0.07 deleterious(0.03) benign(0.002) TCGA-V1-A9Z8-01 10 115391714 115391714 T C NRAP Missense_Mutation p.K548E 0.20 deleterious(0) possibly_damaging(0.626) TCGA-V1-A9Z8-01 10 135180423 135180423 G A ECHS1 Missense_Mutation p.R197W 0.09 tolerated(0.11) benign(0.115) TCGA-V1-A9Z8-01 11 22294405 22294405 T C ANO5 Missense_Mutation p.I702T 0.22 deleterious(0) possibly_damaging(0.486) TCGA-V1-A9Z8-01 12 115118827 115118827 C A TBX3 Missense_Mutation p.V172L 0.18 deleterious(0) probably_damaging(0.993) TCGA-V1-A9Z8-01 12 120166306 120166306 C T CIT Splice_Site p.X1197_splice 0.03 TCGA-V1-A9Z8-01 13 48941695 48941696 - T RB1 Frame_Shift_Ins p.L337Ffs*4 0.21 TCGA-V1-A9Z8-01 14 72055491 72055491 A G SIPA1L1 Missense_Mutation p.N301S 0.24 tolerated(0.96) possibly_damaging(0.901) TCGA-V1-A9Z8-01 16 4408455 4408455 G A CORO7 Silent p.C790C 0.10 TCGA-V1-A9Z8-01 17 53345066 53345066 T G HLF Intron 0.19 TCGA-V1-A9Z8-01 17 80395185 80395185 C T HEXDC Missense_Mutation p.A282V 0.05 tolerated(0.11) benign(0.074) TCGA-V1-A9Z8-01 19 18255926 18255926 C T MAST3 Silent p.L947L 0.09 TCGA-V1-A9Z8-01 1 1330837 1330837 T C CCNL2 Missense_Mutation p.I177M 0.10 deleterious(0) probably_damaging(0.999) TCGA-V1-A9Z8-01 1 1334009 1334017 AAAAGAACC - CCNL2 In_Frame_Del p.R108_Y111delinsH 0.25 TCGA-V1-A9Z8-01 1 152282031 152282031 G - FLG Frame_Shift_Del p.A1778Pfs*56 0.11 TCGA-V1-A9Z8-01 1 3342784 3342784 G - PRDM16 Frame_Shift_Del p.K1094Nfs*17 0.13 TCGA-V1-A9Z8-01 1 3745933 3745933 C T CEP104 Missense_Mutation p.R683Q 0.22 tolerated(1) benign(0) TCGA-V1-A9Z8-01 1 95712099 95712099 A G RWDD3 Missense_Mutation p.E192G 0.21 deleterious(0) probably_damaging(0.931) TCGA-V1-A9Z8-01 22 50580553 50580553 A - MOV10L1 Frame_Shift_Del p.E705Gfs*19 0.11 TCGA-V1-A9Z8-01 2 103318897 103318897 C A SLC9A2 Missense_Mutation p.T594K 0.05 tolerated(0.15) possibly_damaging(0.574) TCGA-V1-A9Z8-01 2 107460268 107460268 C T ST6GAL2 Missense_Mutation p.G56R 0.16 probably_damaging(0.994) TCGA-V1-A9Z8-01 2 130738444 130738444 G C RAB6C Silent p.S252S 0.06 TCGA-V1-A9Z8-01 2 168104430 168104430 C T XIRP2 Silent p.Y2176Y 0.20 TCGA-V1-A9Z8-01 2 190922014 190922014 C T MSTN Silent p.A366A 0.08 TCGA-V1-A9Z8-01 2 63666959 63666959 G A WDPCP Missense_Mutation p.P144L 0.19 deleterious(0.01) probably_damaging(0.97) TCGA-V1-A9Z8-01 3 119536068 119536068 C T NR1I2 3'UTR 0.17 TCGA-V1-A9Z8-01 3 151095894 151095894 G C MED12L Missense_Mutation p.E1436Q 0.13 deleterious(0.05) possibly_damaging(0.838) TCGA-V1-A9Z8-01 5 156734872 156734872 A T CYFIP2 Missense_Mutation p.K274M 0.50 deleterious(0) probably_damaging(0.97) TCGA-V1-A9Z8-01 6 100841761 100841761 G A SIM1 Missense_Mutation p.S391L 0.08 deleterious(0.01) benign(0.37) TCGA-V1-A9Z8-01 6 42600572 42600572 G A UBR2 Nonsense_Mutation p.W492* 0.27 TCGA-V1-A9Z8-01 7 132192946 132192946 G C PLXNA4 Silent p.V169V 0.20 TCGA-V1-A9Z8-01 8 133152366 133152366 C T KCNQ3 Missense_Mutation p.E509K 0.55 deleterious(0) probably_damaging(0.999) TCGA-V1-A9Z8-01 9 131370160 131370160 T G SPTAN1 Silent p.A1392A 0.10 TCGA-V1-A9Z8-01 9 137622098 137622098 C A COL5A1 Missense_Mutation p.P314H 0.10 probably_damaging(0.922) TCGA-V1-A9Z8-01 9 3330293 3330293 G A RFX3 Missense_Mutation p.S147L 0.09 tolerated(0.06) benign(0.015) TCGA-V1-A9Z8-01 X 55103899 55103899 T A PAGE2B Silent p.G87G 0.10 TCGA-V1-A9Z9-01 10 89711899 89711899 C T PTEN Missense_Mutation p.R173C 0.37 deleterious(0.02) probably_damaging(0.913) TCGA-V1-A9Z9-01 11 124179754 124179754 C T OR8D1 Silent p.K303K 0.24 TCGA-V1-A9Z9-01 11 6500446 6500447 GG - ARFIP2 Frame_Shift_Del p.P80Wfs*3 0.20 TCGA-V1-A9Z9-01 12 102053480 102053480 A G MYBPC1 Missense_Mutation p.T575A 0.38 tolerated(0.35) benign(0.001) TCGA-V1-A9Z9-01 12 103246691 103246691 C A PAH Silent p.L248L 0.33 TCGA-V1-A9Z9-01 14 103871417 103871417 C G MARK3 Missense_Mutation p.T19R 0.33 tolerated(0.28) benign(0.446) TCGA-V1-A9Z9-01 14 20942985 20942985 C T PNP Silent p.V113V 0.32 TCGA-V1-A9Z9-01 16 30529130 30529130 G A ITGAL Missense_Mutation p.G1016R 0.29 tolerated(0.38) benign(0.021) TCGA-V1-A9Z9-01 17 26697015 26697015 C G VTN Missense_Mutation p.Q39H 0.35 deleterious(0) probably_damaging(1) TCGA-V1-A9Z9-01 17 35900638 35900638 G T SYNRG Missense_Mutation p.H1070Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-V1-A9Z9-01 17 46620856 46620856 C T HOXB2 Silent p.P215P 0.11 TCGA-V1-A9Z9-01 18 3094299 3094299 G C MYOM1 Missense_Mutation p.P1245A 0.36 deleterious(0.02) benign(0.05) TCGA-V1-A9Z9-01 18 61156685 61156685 G T SERPINB5 Missense_Mutation p.D138Y 0.08 deleterious(0.04) possibly_damaging(0.908) TCGA-V1-A9Z9-01 19 3760228 3760228 C T APBA3 Missense_Mutation p.G12E 0.17 tolerated_low_confidence(0.1) benign(0.118) TCGA-V1-A9Z9-01 19 40366423 40366423 G A FCGBP Missense_Mutation p.A4604V 0.23 probably_damaging(0.968) TCGA-V1-A9Z9-01 19 55019333 55019333 C T LAIR2 Missense_Mutation p.R100C 0.33 tolerated(0.06) benign(0.132) TCGA-V1-A9Z9-01 19 55175919 55175919 T A LILRB4 Missense_Mutation p.L213Q 0.32 deleterious(0.05) probably_damaging(0.982) TCGA-V1-A9Z9-01 1 157105317 157105317 C T ETV3 Missense_Mutation p.G77D 0.13 deleterious(0) probably_damaging(1) TCGA-V1-A9Z9-01 1 86306932 86306932 T C COL24A1 Silent p.L1200L 0.32 TCGA-V1-A9Z9-01 20 39831315 39831315 C A ZHX3 Missense_Mutation p.A748S 0.06 tolerated(0.62) benign(0.023) TCGA-V1-A9Z9-01 22 29682971 29682971 A T EWSR1 Missense_Mutation p.Y220F 0.24 deleterious(0) unknown(0) TCGA-V1-A9Z9-01 2 207169847 207169847 C T ZDBF2 Missense_Mutation p.P199S 0.43 tolerated(0.05) possibly_damaging(0.641) TCGA-V1-A9Z9-01 2 208993062 208993062 G A CRYGC Silent p.C130C 0.32 TCGA-V1-A9Z9-01 2 33820568 33820568 G A FAM98A Nonsense_Mutation p.Q64* 0.24 TCGA-V1-A9Z9-01 3 118931341 118931341 A - B4GALT4 3'UTR 0.12 TCGA-V1-A9Z9-01 3 47127717 47127721 CGTCA - SETD2 Frame_Shift_Del p.D1788Pfs*4 0.27 TCGA-V1-A9Z9-01 4 53494320 53494320 G C USP46 Missense_Mutation p.T43R 0.15 deleterious(0) probably_damaging(0.993) TCGA-V1-A9Z9-01 5 169677740 169677741 CC - LCP2 Frame_Shift_Del p.G491Efs*12 0.22 TCGA-V1-A9Z9-01 5 54557260 54557260 C A DHX29 Missense_Mutation p.G1299V 0.05 deleterious(0) probably_damaging(0.998) TCGA-V1-A9Z9-01 6 148854057 148854057 C T SASH1 Silent p.T563T 0.27 TCGA-V1-A9Z9-01 7 100179757 100179757 G A LRCH4 Silent p.I133I 0.19 TCGA-V1-A9Z9-01 7 103844611 103844611 T C ORC5 Silent p.Q48Q 0.36 TCGA-V1-A9Z9-01 7 91700316 91700316 A - AKAP9 Frame_Shift_Del p.E2204Rfs*5 0.18 TCGA-V1-A9Z9-01 7 99757657 99757658 - C GAL3ST4 Frame_Shift_Ins p.E452Gfs*7 0.21 TCGA-V1-A9Z9-01 8 77765581 77765581 A T ZFHX4 Nonsense_Mutation p.K2142* 0.19 TCGA-V1-A9Z9-01 X 24690706 24690706 G A PCYT1B Missense_Mutation p.A15V 0.17 tolerated_low_confidence(0.46) benign(0.013) TCGA-V1-A9Z9-01 X 31838132 31838132 C G DMD Missense_Mutation p.K2423N 0.60 benign(0.007) TCGA-V1-A9ZG-01 10 124358571 124358571 C T DMBT1 Missense_Mutation p.H1080Y 0.19 deleterious(0) unknown(0) TCGA-V1-A9ZG-01 11 12257790 12257790 G A MICAL2 Missense_Mutation p.E688K 0.16 deleterious(0) benign(0.31) TCGA-V1-A9ZG-01 11 129807533 129807533 C A PRDM10 Silent p.V333V 0.17 TCGA-V1-A9ZG-01 11 59210668 59210668 C T OR5A1 Silent p.S9S 0.18 TCGA-V1-A9ZG-01 12 113384760 113384760 C T OAS3 Silent p.F283F 0.15 TCGA-V1-A9ZG-01 12 124139496 124139496 C T GTF2H3 Missense_Mutation p.A171V 0.23 deleterious(0.03) possibly_damaging(0.783) TCGA-V1-A9ZG-01 12 56527593 56527593 C T ESYT1 Missense_Mutation p.S470F 0.07 deleterious(0) benign(0.444) TCGA-V1-A9ZG-01 14 75179886 75179886 G T FCF1 5'UTR 0.15 TCGA-V1-A9ZG-01 15 42598785 42598785 A G GANC Silent p.G200G 0.16 TCGA-V1-A9ZG-01 16 5140517 5140517 T C FAM86A Missense_Mutation p.Y131C 0.13 deleterious(0.04) possibly_damaging(0.518) TCGA-V1-A9ZG-01 16 67384185 67384185 T C LRRC36 Missense_Mutation p.I190T 0.16 tolerated(0.24) benign(0.007) TCGA-V1-A9ZG-01 16 72832434 72832434 C A ZFHX3 Nonsense_Mutation p.E1383* 0.35 TCGA-V1-A9ZG-01 17 4996197 4996197 A G ZFP3 Missense_Mutation p.I466M 0.15 tolerated(0.13) benign(0.446) TCGA-V1-A9ZG-01 17 7214340 7214340 C T EIF5A Missense_Mutation p.H87Y 0.10 deleterious(0.03) benign(0.027) TCGA-V1-A9ZG-01 18 70526134 70526134 A T NETO1 Missense_Mutation p.F132L 0.22 deleterious(0) benign(0.248) TCGA-V1-A9ZG-01 19 1611797 1611797 T - TCF3 Frame_Shift_Del p.K625Rfs*20 0.27 TCGA-V1-A9ZG-01 1 17314696 17314696 G A ATP13A2 Silent p.S932S 0.22 TCGA-V1-A9ZG-01 1 181721292 181721292 C T CACNA1E Missense_Mutation p.R1249W 0.14 deleterious(0) probably_damaging(0.978) TCGA-V1-A9ZG-01 1 235887435 235887435 C T LYST Missense_Mutation p.E3070K 0.17 deleterious(0) probably_damaging(0.986) TCGA-V1-A9ZG-01 1 24483789 24483789 G A IFNLR1 Missense_Mutation p.P465L 0.14 tolerated(0.1) benign(0.194) TCGA-V1-A9ZG-01 1 38079477 38079477 C T RSPO1 Missense_Mutation p.R175Q 0.15 deleterious(0.01) probably_damaging(1) TCGA-V1-A9ZG-01 21 10933879 10933879 C T TPTE Missense_Mutation p.V334I 0.06 tolerated(1) benign(0.02) TCGA-V1-A9ZG-01 22 51009808 51009808 A C CPT1B Missense_Mutation p.F579C 0.21 deleterious(0) probably_damaging(0.971) TCGA-V1-A9ZG-01 2 217347605 217347605 G A SMARCAL1 Missense_Mutation p.D924N 0.22 deleterious(0.05) benign(0.205) TCGA-V1-A9ZG-01 2 228172604 228172604 A G COL4A3 Silent p.Q1477Q 0.21 TCGA-V1-A9ZG-01 2 71891500 71891500 C T DYSF Silent p.V1702V 0.20 TCGA-V1-A9ZG-01 3 157081476 157081476 C T VEPH1 Missense_Mutation p.G471E 0.14 tolerated(0.16) benign(0.001) TCGA-V1-A9ZG-01 4 169837159 169837159 T G PALLD Missense_Mutation p.L944R 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-V1-A9ZG-01 4 186085310 186085310 G A KIAA1430 Silent p.A448A 0.20 TCGA-V1-A9ZG-01 4 2306299 2306299 C T ZFYVE28 Missense_Mutation p.V590I 0.17 tolerated_low_confidence(0.18) benign(0.012) TCGA-V1-A9ZG-01 7 76828505 76828505 T A FGL2 Silent p.S202S 0.11 TCGA-V1-A9ZG-01 X 153036078 153036078 C G PLXNB3 Missense_Mutation p.T687S 0.47 tolerated(0.25) benign(0.167) TCGA-V1-A9ZG-01 X 43652801 43652801 G C MAOB Missense_Mutation p.P265A 0.41 tolerated(0.16) possibly_damaging(0.612) TCGA-V1-A9ZI-01 11 19077106 19077106 C T MRGPRX2 Missense_Mutation p.V282M 0.34 tolerated(0.05) possibly_damaging(0.811) TCGA-V1-A9ZI-01 11 40136649 40136649 C T LRRC4C Silent p.A398A 0.39 TCGA-V1-A9ZI-01 11 43918832 43918832 C G ALKBH3 Intron 0.31 TCGA-V1-A9ZI-01 11 58602146 58602146 C G GLYATL2 Missense_Mutation p.W214S 0.41 deleterious(0) probably_damaging(0.999) TCGA-V1-A9ZI-01 11 62296914 62296914 C T AHNAK Missense_Mutation p.D1659N 0.44 possibly_damaging(0.728) TCGA-V1-A9ZI-01 12 49428624 49428633 GCCCTGAGCC - KMT2D Frame_Shift_Del p.M3439Ifs*9 0.24 TCGA-V1-A9ZI-01 12 85255473 85255473 G A SLC6A15 Missense_Mutation p.R711W 0.35 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-V1-A9ZI-01 14 32586457 32586457 T G ARHGAP5 Missense_Mutation p.F1277V 0.33 deleterious(0) probably_damaging(0.999) TCGA-V1-A9ZI-01 15 101821982 101821982 T G SNRPA1 Missense_Mutation p.T239P 0.26 tolerated(0.22) benign(0.134) TCGA-V1-A9ZI-01 16 2334347 2334347 G A ABCA3 Silent p.Y1265Y 0.46 TCGA-V1-A9ZI-01 16 57718380 57718380 G A GPR97 Missense_Mutation p.R414H 0.58 tolerated(0.07) benign(0.149) TCGA-V1-A9ZI-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.45 TCGA-V1-A9ZI-01 18 2892200 2892200 C T EMILIN2 Missense_Mutation p.T692M 0.06 tolerated(0.07) benign(0.033) TCGA-V1-A9ZI-01 19 55603825 55603825 G A PPP1R12C Silent p.D680D 0.62 TCGA-V1-A9ZI-01 1 179873145 179873145 C T TOR1AIP1 Nonsense_Mutation p.Q262* 0.07 TCGA-V1-A9ZI-01 1 34666535 34666537 AGA - C1orf94 In_Frame_Del p.K392del 0.56 TCGA-V1-A9ZI-01 20 3781733 3781735 ACC - CDC25B In_Frame_Del p.D233_L234delinsV 0.26 TCGA-V1-A9ZI-01 22 17280821 17280821 C T XKR3 Silent p.T143T 0.38 TCGA-V1-A9ZI-01 22 26222374 26222374 A - MYO18B Splice_Site p.X899_splice 0.39 TCGA-V1-A9ZI-01 2 220115819 220115819 G C TUBA4A Missense_Mutation p.A201G 0.16 deleterious_low_confidence(0.02) benign(0.003) TCGA-V1-A9ZI-01 2 233271622 233271622 G T ALPPL2 Silent p.V6V 0.44 TCGA-V1-A9ZI-01 2 32476323 32476323 G A NLRC4 Missense_Mutation p.R204C 0.06 tolerated(0.16) benign(0.027) TCGA-V1-A9ZI-01 3 112647723 112647723 C T CD200R1 Missense_Mutation p.V237M 0.22 deleterious(0.03) benign(0.382) TCGA-V1-A9ZI-01 3 3097911 3097911 T G CNTN4 3'UTR 0.35 TCGA-V1-A9ZI-01 3 48697516 48697526 GCATCTGTGAT - CELSR3 Frame_Shift_Del p.I848Qfs*18 0.38 TCGA-V1-A9ZI-01 3 51897229 51897229 G A IQCF2 Nonsense_Mutation p.W113* 0.41 TCGA-V1-A9ZI-01 3 52022810 52022810 C T ACY1 Missense_Mutation p.P344S 0.37 deleterious(0.04) possibly_damaging(0.562) TCGA-V1-A9ZI-01 5 140720504 140720504 G A PCDHGA2 Missense_Mutation p.A656T 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.577) TCGA-V1-A9ZI-01 5 145442111 145442111 G A SH3RF2 Silent p.A679A 0.41 TCGA-V1-A9ZI-01 5 149441301 149441301 T G CSF1R Missense_Mutation p.N580H 0.11 deleterious(0) probably_damaging(0.998) TCGA-V1-A9ZI-01 5 55264119 55264119 G C IL6ST Missense_Mutation p.T159S 0.48 tolerated(0.12) benign(0.265) TCGA-V1-A9ZI-01 6 32150159 32150159 G A AGER Missense_Mutation p.P277S 0.38 deleterious(0.04) benign(0.113) TCGA-V1-A9ZI-01 6 34003558 34003558 C T GRM4 Missense_Mutation p.V777M 0.28 deleterious(0.04) probably_damaging(0.999) TCGA-V1-A9ZI-01 8 2857534 2857534 C T CSMD1 Missense_Mutation p.V2717M 0.63 probably_damaging(1) TCGA-V1-A9ZI-01 8 53044633 53044633 G T ST18 Missense_Mutation p.P851T 0.08 tolerated(0.31) benign(0.211) TCGA-V1-A9ZI-01 8 55538977 55538977 G A RP1 Silent p.G845G 0.18 TCGA-V1-A9ZI-01 9 100431229 100431229 A G NCBP1 Silent p.Q706Q 0.36 TCGA-V1-A9ZI-01 9 21206426 21206426 C T IFNA10 3'UTR 0.13 TCGA-V1-A9ZK-01 10 129209120 129209120 G A DOCK1 Missense_Mutation p.E1433K 0.09 deleterious(0.04) possibly_damaging(0.474) TCGA-V1-A9ZK-01 11 124440636 124440636 A - OR8A1 Frame_Shift_Del p.I224Mfs*5 0.17 TCGA-V1-A9ZK-01 11 71238651 71238651 G A KRTAP5-7 Missense_Mutation p.C102Y 0.07 deleterious_low_confidence(0.04) unknown(0) TCGA-V1-A9ZK-01 11 71946489 71946489 C T INPPL1 Missense_Mutation p.L885F 0.14 deleterious(0.02) possibly_damaging(0.893) TCGA-V1-A9ZK-01 12 49420108 49420108 C A KMT2D Missense_Mutation p.R5214L 0.21 unknown(0) TCGA-V1-A9ZK-01 12 49420109 49420109 G A KMT2D Missense_Mutation p.R5214C 0.19 unknown(0) TCGA-V1-A9ZK-01 12 7177603 7177603 G A C1S Missense_Mutation p.R572Q 0.12 tolerated(0.36) benign(0.013) TCGA-V1-A9ZK-01 14 24734832 24734832 C T RABGGTA Missense_Mutation p.V565I 0.14 tolerated(1) benign(0) TCGA-V1-A9ZK-01 15 22851079 22851079 T G TUBGCP5 Nonsense_Mutation p.Y447* 0.12 TCGA-V1-A9ZK-01 15 69553493 69553493 A T GLCE Silent p.G218G 0.17 TCGA-V1-A9ZK-01 15 72119078 72119078 T G MYO9A Missense_Mutation p.K2497T 0.11 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-V1-A9ZK-01 17 18967238 18967238 T C SNORD3B-2 RNA 0.07 TCGA-V1-A9ZK-01 17 47696424 47696424 G C SPOP Missense_Mutation p.F133L 0.13 tolerated(0.07) probably_damaging(0.992) TCGA-V1-A9ZK-01 17 78831653 78831653 C G RPTOR Missense_Mutation p.R488G 0.15 deleterious(0) probably_damaging(0.999) TCGA-V1-A9ZK-01 1 110768691 110768691 G A KCNC4 Silent p.E570E 0.15 TCGA-V1-A9ZK-01 1 118426184 118426193 AAAATACACT - GDAP2 Frame_Shift_Del p.L388Ffs*4 0.14 TCGA-V1-A9ZK-01 1 19653727 19653727 C T PQLC2 Missense_Mutation p.R209W 0.12 deleterious(0) probably_damaging(0.995) TCGA-V1-A9ZK-01 1 39781228 39781228 C T MACF1 Missense_Mutation p.A1110V 0.17 benign(0.029) TCGA-V1-A9ZK-01 22 20929420 20929420 C G MED15 Silent p.A391A 0.04 TCGA-V1-A9ZK-01 3 184033173 184033173 C G EIF4G1 5'Flank 0.18 TCGA-V1-A9ZK-01 5 102887965 102887965 C A NUDT12 Missense_Mutation p.V411F 0.08 deleterious(0) probably_damaging(0.999) TCGA-V1-A9ZK-01 5 167553796 167553796 C A TENM2 Nonsense_Mutation p.C749* 0.13 TCGA-V1-A9ZK-01 5 176952083 176952083 C A FAM193B Missense_Mutation p.V467F 0.16 deleterious(0) probably_damaging(0.999) TCGA-V1-A9ZK-01 6 170159076 170159076 A C ERMARD Missense_Mutation p.K174Q 0.13 tolerated(0.28) possibly_damaging(0.791) TCGA-V1-A9ZK-01 7 17838696 17838696 G A SNX13 Nonsense_Mutation p.R794* 0.10 TCGA-V1-A9ZK-01 8 48690415 48690415 C A PRKDC Missense_Mutation p.L3957F 0.32 probably_damaging(1) TCGA-V1-A9ZK-01 9 34249846 34249846 C A UBAP1 Missense_Mutation p.L449M 0.20 deleterious(0.01) probably_damaging(0.975) TCGA-V1-A9ZR-01 10 125528231 125528231 G A CPXM2 Silent p.P370P 0.23 TCGA-V1-A9ZR-01 11 117711023 117711023 C T FXYD6 Intron 0.25 TCGA-V1-A9ZR-01 11 65270191 65270191 A C MALAT1 RNA 0.20 TCGA-V1-A9ZR-01 12 49721016 49721016 G A TROAP Missense_Mutation p.R265H 0.32 tolerated(1) benign(0) TCGA-V1-A9ZR-01 14 22951915 22951915 G A TRAJ57 3'Flank 0.18 TCGA-V1-A9ZR-01 14 64520265 64520265 A G SYNE2 Missense_Mutation p.I3212V 0.25 benign(0.02) TCGA-V1-A9ZR-01 14 77493958 77493958 C A IRF2BPL Missense_Mutation p.A60S 0.21 tolerated(0.17) probably_damaging(0.938) TCGA-V1-A9ZR-01 15 20643874 20643874 G T HERC2P3 RNA 0.13 TCGA-V1-A9ZR-01 15 48791237 48791237 T A FBN1 Splice_Site p.X705_splice 0.21 TCGA-V1-A9ZR-01 15 58465296 58465296 G A AQP9 Missense_Mutation p.A90T 0.24 tolerated(0.08) possibly_damaging(0.85) TCGA-V1-A9ZR-01 15 92459376 92459376 G A SLCO3A1 Missense_Mutation p.G112S 0.09 deleterious(0) probably_damaging(1) TCGA-V1-A9ZR-01 16 21737849 21737849 G A OTOA Missense_Mutation p.R629H 0.23 tolerated(0.18) benign(0.021) TCGA-V1-A9ZR-01 16 3170290 3170290 G A ZNF205 Silent p.A543A 0.29 TCGA-V1-A9ZR-01 17 61417574 61417574 G A TANC2 Missense_Mutation p.R489Q 0.30 tolerated(0.05) benign(0.324) TCGA-V1-A9ZR-01 17 78178942 78178942 C T CARD14 Missense_Mutation p.A836V 0.21 tolerated(1) benign(0) TCGA-V1-A9ZR-01 18 44579365 44579365 T C KATNAL2 Silent p.Y7Y 0.23 TCGA-V1-A9ZR-01 19 38956916 38956916 G A RYR1 Missense_Mutation p.R1019Q 0.17 possibly_damaging(0.701) TCGA-V1-A9ZR-01 19 42754061 42754061 G - ERF Frame_Shift_Del p.K98Rfs*173 0.21 TCGA-V1-A9ZR-01 1 152760036 152760036 T C LCE1E Silent p.R87R 0.25 TCGA-V1-A9ZR-01 1 157068525 157068525 C T ETV3L Silent p.A153A 0.16 TCGA-V1-A9ZR-01 1 165370458 165370458 C T RXRG 3'UTR 0.28 TCGA-V1-A9ZR-01 1 178514690 178514690 G A C1ORF220 Missense_Mutation p.G26S 0.27 probably_damaging(0.931) TCGA-V1-A9ZR-01 1 31423093 31423093 G C PUM1 Missense_Mutation p.Q913E 0.18 deleterious(0) probably_damaging(0.988) TCGA-V1-A9ZR-01 20 31607482 31607482 C T BPIFB2 Missense_Mutation p.R336W 0.43 tolerated(0.09) benign(0.064) TCGA-V1-A9ZR-01 21 31654433 31654433 G A KRTAP24-1 3'UTR 0.38 TCGA-V1-A9ZR-01 22 43204771 43204771 A T ARFGAP3 Splice_Site p.X440_splice 0.24 TCGA-V1-A9ZR-01 2 232104723 232104723 C T ARMC9 Missense_Mutation p.A283V 0.40 tolerated(0.23) benign(0.024) TCGA-V1-A9ZR-01 2 242793153 242793153 C T PDCD1 3'UTR 0.18 TCGA-V1-A9ZR-01 2 44599893 44599893 T A CAMKMT Missense_Mutation p.H59Q 0.24 tolerated(0.76) benign(0.005) TCGA-V1-A9ZR-01 2 90139301 90139301 C G IGKV1D-16 Missense_Mutation p.I24M 0.16 deleterious(0) probably_damaging(0.937) TCGA-V1-A9ZR-01 4 100756895 100756895 T A DAPP1 Missense_Mutation p.S73T 0.09 deleterious(0) probably_damaging(0.994) TCGA-V1-A9ZR-01 4 153243957 153243958 - T FBXW7 3'UTR 0.28 TCGA-V1-A9ZR-01 4 44691372 44691372 A C GUF1 Missense_Mutation p.D383A 0.19 deleterious(0) probably_damaging(0.998) TCGA-V1-A9ZR-01 4 69798438 69798438 T A UGT2A3 Missense_Mutation p.I302F 0.26 deleterious(0.01) probably_damaging(0.936) TCGA-V1-A9ZR-01 5 129520132 129520132 A C CHSY3 Missense_Mutation p.K433Q 0.11 tolerated(0.17) benign(0.155) TCGA-V1-A9ZR-01 5 149602639 149602639 G A CAMK2A Missense_Mutation p.S460L 0.17 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-V1-A9ZR-01 6 155451501 155451501 C T TIAM2 Missense_Mutation p.R382W 0.10 deleterious(0) probably_damaging(0.973) TCGA-V1-A9ZR-01 6 36887390 36887390 G A C6orf89 Missense_Mutation p.G295S 0.34 deleterious(0.03) benign(0.374) TCGA-V1-A9ZR-01 6 83838979 83838979 C T DOPEY1 Missense_Mutation p.S698F 0.33 deleterious(0.01) benign(0.013) TCGA-V1-A9ZR-01 6 83855351 83855351 C T DOPEY1 Nonsense_Mutation p.Q1884* 0.22 TCGA-V1-A9ZR-01 7 151046260 151046260 A T NUB1 Silent p.G97G 0.30 TCGA-V1-A9ZR-01 7 50444412 50444412 C T IKZF1 Silent p.N114N 0.22 TCGA-V1-A9ZR-01 7 80303296 80303296 C T CD36 Intron 0.35 TCGA-V1-A9ZR-01 8 145830944 145830944 G A ARHGAP39 Missense_Mutation p.S19L 0.30 deleterious_low_confidence(0.01) benign(0.115) TCGA-V1-A9ZR-01 8 42828436 42828436 T C HOOK3 Missense_Mutation p.V376A 0.27 tolerated(0.09) benign(0.298) TCGA-V1-A9ZR-01 9 101235478 101235478 C T GABBR2 Missense_Mutation p.V317M 0.17 deleterious(0.01) benign(0.127) TCGA-V1-A9ZR-01 9 124072998 124072998 C T GSN Missense_Mutation p.P181S 0.33 deleterious(0.04) benign(0.004) TCGA-V1-A9ZR-01 9 140036477 140036477 C A GRIN1 Missense_Mutation p.L91I 0.22 tolerated(0.78) benign(0.122) TCGA-V1-A9ZR-01 9 70177121 70177121 G A FOXD4L5 Missense_Mutation p.A288V 0.14 deleterious(0.03) benign(0.17) TCGA-V1-A9ZR-01 X 53455599 53455599 T G RIBC1 Intron 0.25 TCGA-VN-A88I-01 10 99132862 99132862 C T RRP12 Missense_Mutation p.A708T 0.09 tolerated(0.4) benign(0.002) TCGA-VN-A88I-01 12 57864213 57864213 C T GLI1 Missense_Mutation p.P564S 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-VN-A88I-01 13 46554093 46554093 A C ZC3H13 Missense_Mutation p.N589K 0.06 possibly_damaging(0.822) TCGA-VN-A88I-01 15 42003250 42003250 C G MGA Nonsense_Mutation p.Y929* 0.10 TCGA-VN-A88I-01 16 24801953 24801953 G A TNRC6A Missense_Mutation p.A664T 0.08 deleterious(0.04) benign(0.043) TCGA-VN-A88I-01 18 44549171 44549171 G A TCEB3CL Silent p.Y376Y 0.03 TCGA-VN-A88I-01 18 44549172 44549172 T C TCEB3CL Missense_Mutation p.Y376C 0.03 deleterious(0.01) probably_damaging(0.98) TCGA-VN-A88I-01 19 37677872 37677873 - T ZNF585B Frame_Shift_Ins p.N189Kfs*2 0.08 TCGA-VN-A88I-01 1 207850913 207850913 C T CR1L Missense_Mutation p.R93C 0.12 deleterious(0) probably_damaging(0.979) TCGA-VN-A88I-01 1 91859787 91859787 G A HFM1 Silent p.G119G 0.11 TCGA-VN-A88I-01 2 143713791 143713791 C T KYNU Missense_Mutation p.T152M 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-VN-A88I-01 4 126367460 126367460 C T FAT4 Silent p.I2402I 0.05 TCGA-VN-A88I-01 4 39978175 39978175 T C PDS5A Missense_Mutation p.K8R 0.08 tolerated_low_confidence(0.25) possibly_damaging(0.558) TCGA-VN-A88I-01 5 141005259 141005259 G A HDAC3 Missense_Mutation p.S351L 0.13 deleterious(0) possibly_damaging(0.589) TCGA-VN-A88I-01 6 30515194 30515194 G A GNL1 Missense_Mutation p.P405S 0.10 deleterious(0.05) possibly_damaging(0.449) TCGA-VN-A88I-01 8 32621634 32621634 G A NRG1 Missense_Mutation p.R551Q 0.11 deleterious(0.01) probably_damaging(0.942) TCGA-VN-A88I-01 9 135765348 135765348 C T C9orf9 Missense_Mutation p.T167M 0.06 deleterious_low_confidence(0.02) benign(0.009) TCGA-VN-A88K-01 11 108200991 108200991 G C ATM Missense_Mutation p.R2453P 0.78 tolerated(0.11) possibly_damaging(0.546) TCGA-VN-A88K-01 11 5173454 5173454 C T OR52A1 Missense_Mutation p.S49N 0.39 deleterious(0.04) benign(0.028) TCGA-VN-A88K-01 11 5529067 5529067 A C UBQLN3 Missense_Mutation p.N574K 0.46 tolerated(0.22) benign(0.048) TCGA-VN-A88K-01 12 104048409 104048409 A G STAB2 Missense_Mutation p.N495S 0.44 deleterious(0) probably_damaging(0.999) TCGA-VN-A88K-01 12 104387275 104387275 G T GLT8D2 Missense_Mutation p.L259I 0.14 tolerated(0.18) benign(0.21) TCGA-VN-A88K-01 13 111368196 111368196 G T ING1 Missense_Mutation p.G136W 0.47 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-VN-A88K-01 16 20410495 20410495 C T PDILT Missense_Mutation p.R43H 0.43 tolerated(0.45) benign(0) TCGA-VN-A88K-01 16 47697603 47697603 A G PHKB Missense_Mutation p.H765R 0.42 tolerated(1) benign(0.005) TCGA-VN-A88K-01 16 84124506 84124506 A T MBTPS1 Silent p.A335A 0.12 TCGA-VN-A88K-01 17 59858254 59858254 G A BRIP1 Nonsense_Mutation p.R581* 0.32 TCGA-VN-A88K-01 19 13366064 13366064 T C CACNA1A Missense_Mutation p.I1534V 0.41 benign(0.002) TCGA-VN-A88K-01 19 18100609 18100609 C T KCNN1 Missense_Mutation p.R419W 0.46 deleterious(0) possibly_damaging(0.766) TCGA-VN-A88K-01 19 44096613 44096613 G A IRGQ Silent p.A479A 0.29 TCGA-VN-A88K-01 1 10032159 10032159 G C NMNAT1 Missense_Mutation p.V10L 0.36 deleterious(0.05) probably_damaging(0.996) TCGA-VN-A88K-01 1 40780025 40780025 G A COL9A2 Missense_Mutation p.P62L 0.05 deleterious(0.05) unknown(0) TCGA-VN-A88K-01 22 45312456 45312456 G A PHF21B Missense_Mutation p.R90W 0.33 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-VN-A88K-01 2 172669948 172669948 G A SLC25A12 Missense_Mutation p.R358C 0.40 deleterious(0) probably_damaging(0.988) TCGA-VN-A88K-01 5 43175082 43175082 C T ZNF131 Silent p.N539N 0.42 TCGA-VN-A88K-01 6 146755288 146755288 C T GRM1 Missense_Mutation p.R981C 0.37 deleterious_low_confidence(0.01) possibly_damaging(0.586) TCGA-VN-A88K-01 7 100190516 100190516 T C FBXO24 Silent p.C261C 0.47 TCGA-VN-A88K-01 7 92027931 92027931 A G ANKIB1 Missense_Mutation p.M980V 0.39 tolerated_low_confidence(0.09) benign(0.002) TCGA-VN-A88K-01 8 133141466 133141466 A T KCNQ3 3'UTR 0.37 TCGA-VN-A88K-01 8 68139818 68139818 T C ARFGEF1 Missense_Mutation p.N1203D 0.47 tolerated(0.18) benign(0.071) TCGA-VN-A88K-01 9 130507029 130507029 C T SH2D3C Nonsense_Mutation p.W538* 0.34 TCGA-VN-A88K-01 9 139329254 139329254 G A INPP5E Missense_Mutation p.R292C 0.41 deleterious(0) possibly_damaging(0.814) TCGA-VN-A88K-01 X 119005303 119005303 C T RNF113A Missense_Mutation p.E92K 0.82 tolerated(0.33) benign(0.002) TCGA-VN-A88K-01 X 150345372 150345372 G A GPR50 Missense_Mutation p.R60Q 0.84 tolerated(0.08) benign(0.148) TCGA-VN-A88L-01 11 57310507 57310507 C T SMTNL1 Missense_Mutation p.T149M 0.38 tolerated(0.14) benign(0.003) TCGA-VN-A88L-01 11 65789325 65789325 G A CATSPER1 Silent p.S485S 0.31 TCGA-VN-A88L-01 11 67938486 67938486 C A SUV420H1 Nonsense_Mutation p.E325* 0.24 TCGA-VN-A88L-01 11 6913340 6913340 C T OR2D2 Missense_Mutation p.R131H 0.11 tolerated(1) benign(0.001) TCGA-VN-A88L-01 12 57868688 57868688 G A ARHGAP9 Missense_Mutation p.R541W 0.06 deleterious(0) probably_damaging(0.941) TCGA-VN-A88L-01 14 24035556 24035556 C T AP1G2 Silent p.E134E 0.30 TCGA-VN-A88L-01 14 94776285 94776285 G A SERPINA6 Silent p.D224D 0.25 TCGA-VN-A88L-01 16 70902478 70902478 G A HYDIN Nonsense_Mutation p.R3769* 0.24 TCGA-VN-A88L-01 16 71779049 71779049 G A AP1G1 Missense_Mutation p.T669I 0.08 tolerated(0.36) benign(0.005) TCGA-VN-A88L-01 17 16344431 16344431 C G TRPV2 3'Flank 0.27 TCGA-VN-A88L-01 17 17398953 17398953 A G RASD1 Missense_Mutation p.F111S 0.10 deleterious(0) probably_damaging(0.97) TCGA-VN-A88L-01 17 46627825 46627825 C T HOXB3 Silent p.A389A 0.28 TCGA-VN-A88L-01 19 9069614 9069614 G A MUC16 Silent p.S5944S 0.09 TCGA-VN-A88L-01 1 210637880 210637880 C T HHAT Silent p.F297F 0.19 TCGA-VN-A88L-01 1 210637915 210637915 C T HHAT Missense_Mutation p.A309V 0.16 deleterious(0.03) possibly_damaging(0.596) TCGA-VN-A88L-01 1 237923150 237923150 T C RYR2 Silent p.C3800C 0.31 TCGA-VN-A88L-01 1 75037029 75037029 C T C1orf173 Silent p.Q1455Q 0.10 TCGA-VN-A88L-01 20 60887497 60887497 T G LAMA5 Missense_Mutation p.N3107H 0.31 benign(0.115) TCGA-VN-A88L-01 21 11049505 11049505 G T BAGE2 RNA 0.04 TCGA-VN-A88L-01 22 40708548 40708548 T G TNRC6B Missense_Mutation p.I1492S 0.05 deleterious(0) possibly_damaging(0.881) TCGA-VN-A88L-01 2 10922433 10922433 C T ATP6V1C2 Missense_Mutation p.R376C 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-VN-A88L-01 4 114274943 114274943 A G ANK2 Silent p.A1723A 0.06 TCGA-VN-A88L-01 4 145580946 145580946 G A HHIP Missense_Mutation p.E263K 0.05 tolerated(0.39) possibly_damaging(0.8) TCGA-VN-A88L-01 6 146350830 146350830 C T GRM1 Silent p.A59A 0.07 TCGA-VN-A88L-01 7 151962178 151962178 G T KMT2C Missense_Mutation p.P377T 0.05 possibly_damaging(0.844) TCGA-VN-A88L-01 7 87369182 87369182 T C RUNDC3B Silent p.N195N 0.09 TCGA-VN-A88L-01 8 106456601 106456601 A C ZFPM2 Missense_Mutation p.D98A 0.19 tolerated(0.14) probably_damaging(0.998) TCGA-VN-A88L-01 9 37801316 37801316 C G DCAF10 Silent p.L151L 0.29 TCGA-VN-A88L-01 X 150349723 150349723 C T GPR50 Silent p.D556D 0.56 TCGA-VN-A88M-01 10 104678735 104678735 C A CNNM2 Missense_Mutation p.N166K 0.04 tolerated(0.05) benign(0.045) TCGA-VN-A88M-01 10 135024980 135024980 C T KNDC1 Silent p.C1321C 0.37 TCGA-VN-A88M-01 10 75289357 75289357 C G USP54 Intron 0.09 TCGA-VN-A88M-01 12 105150943 105150943 C T CHST11 Missense_Mutation p.R141W 0.10 deleterious(0) possibly_damaging(0.849) TCGA-VN-A88M-01 12 49934916 49934916 G T KCNH3 Splice_Site p.X104_splice 0.42 TCGA-VN-A88M-01 12 54108441 54108441 G T CALCOCO1 Missense_Mutation p.L475M 0.11 tolerated(0.11) probably_damaging(0.951) TCGA-VN-A88M-01 17 1183349 1183349 C T TUSC5 Silent p.A18A 0.12 TCGA-VN-A88M-01 17 60033834 60033834 C T MED13 Missense_Mutation p.R1830Q 0.26 deleterious(0) benign(0.286) TCGA-VN-A88M-01 17 78337016 78337016 C T RNF213 Missense_Mutation p.R3824C 0.34 probably_damaging(1) TCGA-VN-A88M-01 18 21484015 21484015 C T LAMA3 Missense_Mutation p.A2146V 0.08 possibly_damaging(0.901) TCGA-VN-A88M-01 19 12060807 12060807 A G ZNF700 Silent p.A656A 0.09 TCGA-VN-A88M-01 19 12089838 12089838 C T ZNF763 Missense_Mutation p.P370S 0.41 deleterious(0.03) possibly_damaging(0.878) TCGA-VN-A88M-01 19 17993012 17993012 G A SLC5A5 Missense_Mutation p.G409E 0.30 deleterious(0.02) probably_damaging(0.994) TCGA-VN-A88M-01 1 111060344 111060344 G A KCNA10 Missense_Mutation p.R356C 0.08 deleterious(0) probably_damaging(1) TCGA-VN-A88M-01 1 156883723 156883723 G T PEAR1 Silent p.L931L 0.12 TCGA-VN-A88M-01 1 158517850 158517850 G A OR6Y1 Missense_Mutation p.R16C 0.32 deleterious(0) benign(0.017) TCGA-VN-A88M-01 20 1903277 1903277 C T SIRPA Missense_Mutation p.S358L 0.24 tolerated(0.29) benign(0.367) TCGA-VN-A88M-01 21 28210279 28210279 G A ADAMTS1 Silent p.F841F 0.06 TCGA-VN-A88M-01 2 141253252 141253252 G A LRP1B Silent p.C2972C 0.16 TCGA-VN-A88M-01 2 15534433 15534433 T C NBAS Missense_Mutation p.I1059V 0.05 tolerated(0.71) benign(0.006) TCGA-VN-A88M-01 4 57261635 57261635 T A PPAT Missense_Mutation p.K479N 0.08 tolerated(0.3) benign(0.002) TCGA-VN-A88M-01 5 130799664 130799664 T C RAPGEF6 Intron 0.14 TCGA-VN-A88M-01 7 98513418 98513418 T C TRRAP Silent p.L758L 0.04 TCGA-VN-A88M-01 8 89180192 89180192 C T MMP16 Missense_Mutation p.V139I 0.31 tolerated(0.14) benign(0.07) TCGA-VN-A88M-01 X 132351178 132351178 G A TFDP3 Silent p.S370S 0.05 TCGA-VN-A88M-01 X 153628938 153628938 G A RPL10 Missense_Mutation p.A155T 0.06 deleterious(0.05) benign(0.425) TCGA-VN-A88N-01 10 25887029 25887029 G A GPR158 Missense_Mutation p.R825K 0.20 tolerated(0.08) possibly_damaging(0.653) TCGA-VN-A88N-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.32 tolerated(0.07) benign(0.069) TCGA-VN-A88N-01 11 55658642 55658642 G C TRIM51 Missense_Mutation p.S298T 0.38 tolerated(0.44) benign(0.032) TCGA-VN-A88N-01 11 9864259 9864259 G A SBF2 Missense_Mutation p.R1057W 0.05 deleterious(0) possibly_damaging(0.836) TCGA-VN-A88N-01 12 2566835 2566835 C T CACNA1C Silent p.R240R 0.08 TCGA-VN-A88N-01 15 33855189 33855189 G A RYR3 Missense_Mutation p.R375H 0.38 probably_damaging(0.991) TCGA-VN-A88N-01 16 85946826 85946826 G A IRF8 Silent p.A179A 0.06 TCGA-VN-A88N-01 17 11532900 11532900 C T DNAH9 Missense_Mutation p.T506M 0.08 benign(0.042) TCGA-VN-A88N-01 17 26902441 26902441 A G ALDOC Missense_Mutation p.V37A 0.14 deleterious(0.02) benign(0.001) TCGA-VN-A88N-01 17 78061450 78061450 C G CCDC40 Missense_Mutation p.H832D 0.23 deleterious(0.01) possibly_damaging(0.735) TCGA-VN-A88N-01 18 57133976 57133976 T C CCBE1 Missense_Mutation p.D183G 0.20 tolerated(0.34) benign(0.006) TCGA-VN-A88N-01 19 37488331 37488331 C T ZNF568 Nonsense_Mutation p.R516* 0.27 TCGA-VN-A88N-01 19 45377223 45377223 C T PVRL2 Missense_Mutation p.R276C 0.36 deleterious(0) probably_damaging(0.955) TCGA-VN-A88N-01 19 47124854 47124854 C T PTGIR Missense_Mutation p.A282T 0.44 deleterious(0) probably_damaging(0.948) TCGA-VN-A88N-01 19 56220147 56220147 C T NLRP9 3'UTR 0.37 TCGA-VN-A88N-01 1 159021837 159021837 T G IFI16 Silent p.L622L 0.37 TCGA-VN-A88N-01 1 159021848 159021848 C A IFI16 Missense_Mutation p.T626N 0.38 tolerated(0.17) benign(0.018) TCGA-VN-A88N-01 1 183093828 183093828 G A LAMC1 Missense_Mutation p.V822M 0.36 tolerated(0.12) benign(0.092) TCGA-VN-A88N-01 1 197297963 197297963 C T CRB1 Missense_Mutation p.A161V 0.21 deleterious(0) probably_damaging(0.998) TCGA-VN-A88N-01 21 34924043 34924043 T G SON Missense_Mutation p.L836V 0.33 benign(0.364) TCGA-VN-A88N-01 2 237285745 237285745 C A IQCA1 Splice_Site p.X521_splice 0.44 TCGA-VN-A88N-01 2 77745759 77745759 G A LRRTM4 Silent p.G412G 0.07 TCGA-VN-A88N-01 3 128200724 128200724 G A GATA2 Missense_Mutation p.R361C 0.05 deleterious(0) probably_damaging(0.997) TCGA-VN-A88N-01 8 38272123 38272123 C T FGFR1 Missense_Mutation p.A699T 0.10 deleterious(0) probably_damaging(1) TCGA-VN-A88N-01 8 55540777 55540777 T A RP1 Silent p.S1445S 0.32 TCGA-VN-A88N-01 X 104984612 104984612 C A IL1RAPL2 Missense_Mutation p.L326M 0.71 deleterious(0.03) probably_damaging(0.913) TCGA-VN-A88N-01 X 39932270 39932279 GATGTAACTT - BCOR Frame_Shift_Del p.K774Qfs*9 0.61 TCGA-VN-A88O-01 10 45473237 45473237 G T C10orf10 Missense_Mutation p.S81Y 0.12 deleterious(0) probably_damaging(0.919) TCGA-VN-A88O-01 10 84118519 84118519 G A NRG3 Missense_Mutation p.R283Q 0.13 tolerated(0.16) benign(0.043) TCGA-VN-A88O-01 11 107968473 107968473 C T CUL5 Silent p.F672F 0.14 TCGA-VN-A88O-01 11 116692051 116692051 C T APOA4 Silent p.L241L 0.14 TCGA-VN-A88O-01 11 5080816 5080816 G A OR52E2 Silent p.F14F 0.08 TCGA-VN-A88O-01 11 64081763 64081763 G A ESRRA Silent p.P165P 0.23 TCGA-VN-A88O-01 11 93471313 93471313 C A TAF1D Nonsense_Mutation p.E141* 0.18 TCGA-VN-A88O-01 12 99007742 99007742 G A IKBIP Missense_Mutation p.T225I 0.29 tolerated(0.4) probably_damaging(0.998) TCGA-VN-A88O-01 14 24791911 24791911 G A ADCY4 Silent p.P782P 0.39 TCGA-VN-A88O-01 15 78466000 78466000 C A ACSBG1 Missense_Mutation p.R675L 0.19 deleterious(0.02) benign(0.297) TCGA-VN-A88O-01 17 33289179 33289179 G T ZNF830 Silent p.R198R 0.07 TCGA-VN-A88O-01 17 47696450 47696450 A T SPOP Missense_Mutation p.F125I 0.33 deleterious(0.03) probably_damaging(0.975) TCGA-VN-A88O-01 19 15587012 15587012 C A PGLYRP2 Missense_Mutation p.D157Y 0.15 deleterious(0.04) benign(0.014) TCGA-VN-A88O-01 19 33183247 33183247 C T NUDT19 Silent p.C127C 0.13 TCGA-VN-A88O-01 1 10364265 10364265 G A KIF1B Intron 0.04 TCGA-VN-A88O-01 1 155147723 155147723 A C TRIM46 Intron 0.15 TCGA-VN-A88O-01 1 16641764 16641764 C A FBXO42 Silent p.L50L 0.11 TCGA-VN-A88O-01 1 18152553 18152553 G A ACTL8 Missense_Mutation p.V214M 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-VN-A88O-01 1 42915623 42915623 C T ZMYND12 Missense_Mutation p.R73Q 0.13 deleterious(0) possibly_damaging(0.883) TCGA-VN-A88O-01 1 59004846 59004846 C G OMA1 Missense_Mutation p.V41L 0.08 tolerated_low_confidence(0.34) benign(0.049) TCGA-VN-A88O-01 1 90475763 90475764 - T ZNF326 Frame_Shift_Ins p.N246* 0.26 TCGA-VN-A88O-01 20 1281299 1281299 G T SNPH Silent p.V84V 0.16 TCGA-VN-A88O-01 20 5283271 5283271 G T PROKR2 Nonsense_Mutation p.Y190* 0.05 TCGA-VN-A88O-01 21 44433202 44433202 C T PKNOX1 Missense_Mutation p.R126C 0.06 deleterious(0) probably_damaging(0.996) TCGA-VN-A88O-01 2 112605385 112605385 G A ANAPC1 Missense_Mutation p.L570F 0.04 tolerated(0.3) benign(0.248) TCGA-VN-A88O-01 2 120567452 120567452 C G PTPN4 Missense_Mutation p.P8R 0.41 tolerated(0.22) probably_damaging(0.997) TCGA-VN-A88O-01 2 139429025 139429027 TGA - NXPH2 In_Frame_Del p.I87del 0.30 TCGA-VN-A88O-01 2 160665083 160665083 C A LY75-CD302 Splice_Site p.X1567_splice 0.21 TCGA-VN-A88O-01 2 165755002 165755002 G C SLC38A11 Missense_Mutation p.S389C 0.05 deleterious(0.01) possibly_damaging(0.67) TCGA-VN-A88O-01 2 196545261 196545261 A G SLC39A10 Silent p.K165K 0.12 TCGA-VN-A88O-01 2 201724917 201724917 T C CLK1 Missense_Mutation p.T180A 0.07 tolerated(0.36) benign(0.027) TCGA-VN-A88O-01 2 220334050 220334050 T C SPEG Missense_Mutation p.F1222L 0.12 probably_damaging(0.959) TCGA-VN-A88O-01 2 68882445 68882445 C T PROKR1 Missense_Mutation p.R307C 0.15 deleterious(0) probably_damaging(0.997) TCGA-VN-A88O-01 3 101395779 101395779 G T ZBTB11 5'UTR 0.09 TCGA-VN-A88O-01 4 38097623 38097623 A G TBC1D1 Silent p.V770V 0.05 TCGA-VN-A88O-01 5 56160643 56160643 G A MAP3K1 Missense_Mutation p.R306H 0.10 deleterious(0) probably_damaging(0.979) TCGA-VN-A88O-01 6 114262876 114262876 T C HDAC2 Missense_Mutation p.K478E 0.18 tolerated_low_confidence(0.67) possibly_damaging(0.899) TCGA-VN-A88O-01 6 159654416 159654416 G A FNDC1 Missense_Mutation p.A958T 0.13 tolerated_low_confidence(0.31) unknown(0) TCGA-VN-A88O-01 6 26468970 26468970 A C BTN2A1 3'UTR 0.29 TCGA-VN-A88O-01 6 76022612 76022612 G A FILIP1 Missense_Mutation p.S979F 0.05 deleterious(0) probably_damaging(0.999) TCGA-VN-A88O-01 8 121426335 121426335 A C MRPL13 Missense_Mutation p.I137S 0.26 deleterious(0) probably_damaging(0.953) TCGA-VN-A88O-01 8 72754734 72754734 G A MSC 3'UTR 0.08 TCGA-VN-A88O-01 9 107528754 107528754 T C NIPSNAP3B Missense_Mutation p.V70A 0.08 deleterious(0) possibly_damaging(0.595) TCGA-VN-A88O-01 X 53563401 53563401 C T HUWE1 Missense_Mutation p.R4122H 0.21 unknown(0) TCGA-VN-A88P-01 10 103922033 103922033 G A NOLC1 3'UTR 0.16 TCGA-VN-A88P-01 10 30306821 30306821 C G KIAA1462 Missense_Mutation p.E1357D 0.24 deleterious(0) probably_damaging(0.998) TCGA-VN-A88P-01 10 97074853 97074853 G C SORBS1 Missense_Mutation p.T1281S 0.35 deleterious(0) probably_damaging(0.996) TCGA-VN-A88P-01 11 117152031 117152031 T C RNF214 Missense_Mutation p.S383P 0.15 tolerated(0.08) probably_damaging(0.953) TCGA-VN-A88P-01 12 124297927 124297927 G A DNAH10 Missense_Mutation p.D1003N 0.13 benign(0.071) TCGA-VN-A88P-01 12 130840152 130840152 C A PIWIL1 Missense_Mutation p.N448K 0.32 tolerated(0.32) benign(0) TCGA-VN-A88P-01 12 26640135 26640135 A T ITPR2 Missense_Mutation p.F1807Y 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-VN-A88P-01 12 49440431 49440431 G - KMT2D Frame_Shift_Del p.P1460Hfs*46 0.27 TCGA-VN-A88P-01 13 111117853 111117853 C T COL4A2 Silent p.P626P 0.10 TCGA-VN-A88P-01 14 101194764 101194764 A T DLK1 Missense_Mutation p.Q33H 0.21 tolerated(0.1) benign(0.001) TCGA-VN-A88P-01 14 93994973 93994973 T A UNC79 Missense_Mutation p.C168S 0.42 deleterious(0) probably_damaging(0.995) TCGA-VN-A88P-01 15 54847665 54847665 G A UNC13C Silent p.T1971T 0.70 TCGA-VN-A88P-01 16 1827069 1827069 C A SPSB3 3'UTR 0.12 TCGA-VN-A88P-01 16 49670145 49670145 G A ZNF423 Missense_Mutation p.T973M 0.10 deleterious(0.02) probably_damaging(0.981) TCGA-VN-A88P-01 17 5353605 5353605 C T DHX33 Missense_Mutation p.R549H 0.12 tolerated(0.35) probably_damaging(0.997) TCGA-VN-A88P-01 17 78222020 78222020 C T SLC26A11 Silent p.L462L 0.37 TCGA-VN-A88P-01 18 13759951 13759951 G C RNMT Missense_Mutation p.L468F 0.50 deleterious(0.02) possibly_damaging(0.649) TCGA-VN-A88P-01 18 61652428 61652428 G C SERPINB8 Missense_Mutation p.E223D 0.29 tolerated(0.14) benign(0.002) TCGA-VN-A88P-01 19 21950314 21950314 C T ZNF100 5'UTR 0.10 TCGA-VN-A88P-01 19 4054211 4054211 C A ZBTB7A Missense_Mutation p.E340D 0.31 tolerated(0.4) benign(0.001) TCGA-VN-A88P-01 19 49842112 49842114 CAG - CD37 In_Frame_Del p.S202del 0.29 TCGA-VN-A88P-01 1 108417551 108417551 T A VAV3 Missense_Mutation p.D98V 0.40 deleterious(0) possibly_damaging(0.65) TCGA-VN-A88P-01 1 152282534 152282534 G A FLG Missense_Mutation p.R1610W 0.03 possibly_damaging(0.689) TCGA-VN-A88P-01 1 170699464 170699464 G A PRRX1 Intron 0.14 TCGA-VN-A88P-01 1 206944256 206944256 C T IL10 Missense_Mutation p.R125H 0.39 deleterious(0.01) benign(0.057) TCGA-VN-A88P-01 2 125192103 125192103 A G CNTNAP5 Missense_Mutation p.Y191C 0.17 deleterious(0) possibly_damaging(0.873) TCGA-VN-A88P-01 2 131520257 131520257 G T AMER3 Silent p.P204P 0.31 TCGA-VN-A88P-01 2 173832003 173832003 C T RAPGEF4 Missense_Mutation p.H279Y 0.29 tolerated(1) benign(0.004) TCGA-VN-A88P-01 2 231090508 231090508 G T SP140 5'UTR 0.10 TCGA-VN-A88P-01 2 43926933 43926933 C T PLEKHH2 Missense_Mutation p.S279F 0.19 deleterious(0.05) benign(0.379) TCGA-VN-A88P-01 3 114069639 114069639 C A ZBTB20 Missense_Mutation p.G429V 0.35 deleterious(0) benign(0.048) TCGA-VN-A88P-01 3 13381788 13381788 G A NUP210 Missense_Mutation p.P1080L 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-VN-A88P-01 3 69087802 69087802 A C TMF1 Silent p.R688R 0.45 TCGA-VN-A88P-01 3 73657756 73657756 G A PDZRN3 Missense_Mutation p.P268L 0.33 deleterious(0) benign(0.053) TCGA-VN-A88P-01 4 10447287 10447287 G C ZNF518B Silent p.V222V 0.04 TCGA-VN-A88P-01 5 140188584 140188584 C T PCDHA4 Silent p.N604N 0.27 TCGA-VN-A88P-01 5 146080619 146080619 G A PPP2R2B Nonsense_Mutation p.R56* 0.23 TCGA-VN-A88P-01 5 156590429 156590429 C T FAM71B Missense_Mutation p.A283T 0.20 tolerated(0.2) benign(0.031) TCGA-VN-A88P-01 6 43112201 43112201 A G PTK7 Missense_Mutation p.Q763R 0.14 deleterious(0.05) probably_damaging(0.948) TCGA-VN-A88P-01 6 86195049 86195049 T G NT5E Missense_Mutation p.F283C 0.49 deleterious(0) possibly_damaging(0.806) TCGA-VN-A88P-01 7 150776063 150776063 C T FASTK Missense_Mutation p.R184Q 0.50 tolerated(0.26) benign(0.012) TCGA-VN-A88P-01 7 4119141 4119141 T G SDK1 Silent p.P1083P 0.18 TCGA-VN-A88P-01 8 22079251 22079251 C T PHYHIP Missense_Mutation p.R203H 0.36 tolerated(0.17) possibly_damaging(0.855) TCGA-VN-A88P-01 8 26237669 26237669 A G BNIP3L 5'Flank 0.15 TCGA-VN-A88P-01 8 75761482 75761485 TAAA - PI15 Frame_Shift_Del p.*259F 0.56 TCGA-VN-A88P-01 8 97621862 97621862 T C SDC2 3'UTR 0.22 TCGA-VN-A88P-01 9 121930373 121930373 G A BRINP1 Silent p.P425P 0.35 TCGA-VN-A88P-01 9 129870588 129870588 G T ANGPTL2 Silent p.L141L 0.51 TCGA-VN-A88P-01 9 6013360 6013360 G A RANBP6 Missense_Mutation p.L750F 0.11 deleterious(0.02) possibly_damaging(0.726) TCGA-VN-A88P-01 9 6013361 6013361 A T RANBP6 Nonsense_Mutation p.Y749* 0.12 TCGA-VN-A88P-01 9 95378253 95378253 T C IPPK Missense_Mutation p.E446G 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-VN-A88P-01 X 120009180 120009180 G A CT47B1 Silent p.Y115Y 0.62 TCGA-VN-A88Q-01 10 64136573 64136573 A G ZNF365 Silent p.K207K 0.26 TCGA-VN-A88Q-01 10 75051125 75051125 G A TTC18 Missense_Mutation p.R770W 0.31 deleterious(0.02) benign(0) TCGA-VN-A88Q-01 11 1248357 1248357 C T MUC5B Silent p.N186N 0.23 TCGA-VN-A88Q-01 11 47861461 47861461 G - NUP160 Frame_Shift_Del p.L228Cfs*30 0.22 TCGA-VN-A88Q-01 11 60215245 60215245 G T MS4A5 3'UTR 0.32 TCGA-VN-A88Q-01 11 64064397 64064397 G A KCNK4 Silent p.S79S 0.24 TCGA-VN-A88Q-01 11 6913396 6913396 G A OR2D2 Silent p.C112C 0.24 TCGA-VN-A88Q-01 11 94800909 94800909 C A SRSF8 Silent p.L173L 0.12 TCGA-VN-A88Q-01 12 115121112 115121112 G A TBX3 5'UTR 0.27 TCGA-VN-A88Q-01 12 129559089 129559089 G C TMEM132D Missense_Mutation p.H877Q 0.20 tolerated(0.53) benign(0.004) TCGA-VN-A88Q-01 13 20039450 20039450 T G TPTE2 Missense_Mutation p.E207D 0.29 tolerated(0.24) possibly_damaging(0.665) TCGA-VN-A88Q-01 14 21945674 21945674 A G TOX4 Missense_Mutation p.N9S 0.25 tolerated(0.33) benign(0.076) TCGA-VN-A88Q-01 17 37762553 37762553 C A NEUROD2 Silent p.R100R 0.55 TCGA-VN-A88Q-01 17 40001966 40001966 G A KLHL10 Missense_Mutation p.D425N 0.47 deleterious(0) probably_damaging(0.997) TCGA-VN-A88Q-01 17 76870100 76870100 G A TIMP2 Intron 0.27 TCGA-VN-A88Q-01 18 54547218 54547218 T C WDR7 Silent p.S1116S 0.33 TCGA-VN-A88Q-01 19 35790572 35790572 C T MAG Silent p.H177H 0.31 TCGA-VN-A88Q-01 19 58187585 58187585 G A ZSCAN4 Silent p.A24A 0.40 TCGA-VN-A88Q-01 1 16918694 16918694 T A NBPF1 5'UTR 0.15 TCGA-VN-A88Q-01 1 171086252 171086252 C T FMO3 Silent p.S423S 0.08 TCGA-VN-A88Q-01 1 193045706 193045706 G A TROVE2 Missense_Mutation p.V293I 0.25 tolerated(0.17) benign(0.446) TCGA-VN-A88Q-01 1 205767940 205767940 A G SLC41A1 Missense_Mutation p.M234T 0.49 tolerated(0.07) benign(0.015) TCGA-VN-A88Q-01 1 207075401 207075401 G A IL24 Missense_Mutation p.R175Q 0.07 tolerated(0.56) benign(0) TCGA-VN-A88Q-01 1 226570790 226570790 G A PARP1 Missense_Mutation p.P369L 0.25 tolerated(0.09) benign(0.001) TCGA-VN-A88Q-01 1 237619981 237619981 C T RYR2 Nonsense_Mutation p.R520* 0.34 TCGA-VN-A88Q-01 1 237947221 237947221 C T RYR2 Missense_Mutation p.A4070V 0.28 benign(0.126) TCGA-VN-A88Q-01 22 37707052 37707052 C T CYTH4 Missense_Mutation p.R278W 0.20 deleterious(0) probably_damaging(0.972) TCGA-VN-A88Q-01 2 102968056 102968056 C T IL1RL1 Missense_Mutation p.T449I 0.35 deleterious(0) probably_damaging(0.954) TCGA-VN-A88Q-01 2 131116856 131116856 G A PTPN18 Missense_Mutation p.D85N 0.14 deleterious(0.01) probably_damaging(0.982) TCGA-VN-A88Q-01 2 141108609 141108609 T A LRP1B Splice_Site p.X3884_splice 0.21 TCGA-VN-A88Q-01 2 26696092 26696092 C T OTOF Missense_Mutation p.R1214H 0.32 deleterious(0) probably_damaging(1) TCGA-VN-A88Q-01 2 31562436 31562436 C T XDH Silent p.P1231P 0.26 TCGA-VN-A88Q-01 2 43969914 43969914 C T PLEKHH2 Missense_Mutation p.R1086C 0.31 deleterious(0) probably_damaging(0.998) TCGA-VN-A88Q-01 3 180378437 180378437 C A CCDC39 Missense_Mutation p.W146L 0.60 deleterious(0.01) possibly_damaging(0.828) TCGA-VN-A88Q-01 3 46721979 46721979 C T ALS2CL Missense_Mutation p.V497I 0.17 tolerated(0.62) benign(0.024) TCGA-VN-A88Q-01 3 50603088 50603088 G A C3orf18 Missense_Mutation p.R15C 0.15 tolerated_low_confidence(0.06) benign(0.004) TCGA-VN-A88Q-01 4 170043369 170043369 G A SH3RF1 Missense_Mutation p.L410F 0.38 tolerated(0.46) benign(0.001) TCGA-VN-A88Q-01 4 46976285 46976285 G T GABRA4 Missense_Mutation p.Q229K 0.09 deleterious(0.02) possibly_damaging(0.723) TCGA-VN-A88Q-01 5 90670917 90670917 G A ARRDC3 Missense_Mutation p.T231I 0.42 deleterious(0.04) possibly_damaging(0.633) TCGA-VN-A88Q-01 7 104747653 104747653 G A KMT2E Missense_Mutation p.R963H 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-VN-A88Q-01 7 44807185 44807185 A G ZMIZ2 Missense_Mutation p.N909S 0.28 tolerated(1) benign(0) TCGA-VN-A88Q-01 8 143995766 143995766 C T CYP11B2 Missense_Mutation p.V290M 0.31 tolerated(0.56) possibly_damaging(0.507) TCGA-VN-A88Q-01 8 17396401 17396401 C T SLC7A2 Missense_Mutation p.A23V 0.24 deleterious_low_confidence(0) benign(0.005) TCGA-VN-A88Q-01 9 115760059 115760059 T G ZNF883 RNA 0.10 TCGA-VN-A88Q-01 9 32631824 32631824 G A TAF1L Missense_Mutation p.R1252W 0.34 deleterious(0) probably_damaging(1) TCGA-VN-A88Q-01 9 90262289 90262289 A G DAPK1 Missense_Mutation p.N434D 0.28 tolerated(0.36) benign(0.008) TCGA-VN-A88Q-01 Y 21871503 21871503 C T KDM5D Missense_Mutation p.A926T 0.47 tolerated(0.34) benign(0.038) TCGA-VN-A88R-01 10 105832989 105832989 T A COL17A1 Nonsense_Mutation p.R132* 0.05 TCGA-VN-A88R-01 10 73558936 73558936 T C CDH23 Missense_Mutation p.S135P 0.45 tolerated(0.06) possibly_damaging(0.653) TCGA-VN-A88R-01 10 73558937 73558937 C A CDH23 Nonsense_Mutation p.S135* 0.45 TCGA-VN-A88R-01 10 88676986 88676986 A T BMPR1A Missense_Mutation p.K257N 0.26 tolerated(0.41) benign(0.078) TCGA-VN-A88R-01 11 130278687 130278687 G T ADAMTS8 Missense_Mutation p.S633R 0.29 tolerated(0.05) benign(0.188) TCGA-VN-A88R-01 11 61730330 61730330 A C BEST1 Missense_Mutation p.K508N 0.29 deleterious_low_confidence(0) possibly_damaging(0.471) TCGA-VN-A88R-01 12 117696254 117696254 C T NOS1 Missense_Mutation p.G827S 0.38 tolerated(0.15) possibly_damaging(0.902) TCGA-VN-A88R-01 13 25671849 25671849 C T PABPC3 Missense_Mutation p.R505W 0.42 tolerated(0.06) benign(0.339) TCGA-VN-A88R-01 13 27745742 27745742 G A USP12 Missense_Mutation p.S12F 0.59 tolerated_low_confidence(0.39) benign(0.001) TCGA-VN-A88R-01 14 59797408 59797408 T C DAAM1 Splice_Site p.X520_splice 0.42 TCGA-VN-A88R-01 14 59942682 59942682 C T L3HYPDH Missense_Mutation p.A282T 0.43 deleterious(0) probably_damaging(0.994) TCGA-VN-A88R-01 16 15771720 15771720 C G NDE1 Silent p.L100L 0.53 TCGA-VN-A88R-01 16 70187414 70187414 G C PDPR Missense_Mutation p.D725H 0.36 deleterious(0) probably_damaging(1) TCGA-VN-A88R-01 17 47696450 47696450 A G SPOP Missense_Mutation p.F125L 0.43 deleterious(0.04) possibly_damaging(0.553) TCGA-VN-A88R-01 19 1279101 1279101 C T C19orf24 3'UTR 0.31 TCGA-VN-A88R-01 19 40890039 40890039 T G HIPK4 Missense_Mutation p.D158A 0.34 deleterious(0) probably_damaging(1) TCGA-VN-A88R-01 1 202092723 202092723 T C GPR37L1 Splice_Site p.X210_splice 0.35 TCGA-VN-A88R-01 2 109399222 109399250 GACTGCTGAGAACTTCAGAGCACTATGCA - RANBP2 Frame_Shift_Del p.T3092Wfs*30 0.23 TCGA-VN-A88R-01 2 113783764 113783764 G T IL36B Missense_Mutation p.L103I 0.38 deleterious_low_confidence(0.04) benign(0.261) TCGA-VN-A88R-01 2 96689180 96689180 G A GPAT2 Silent p.G635G 0.12 TCGA-VN-A88R-01 3 14200281 14200281 G T XPC Missense_Mutation p.Q368K 0.32 tolerated(0.42) benign(0.003) TCGA-VN-A88R-01 3 160232794 160232794 T C KPNA4 Intron 0.05 TCGA-VN-A88R-01 3 44611916 44611916 C G ZKSCAN7 Silent p.P438P 0.35 TCGA-VN-A88R-01 7 56007346 56007346 T G ZNF713 Missense_Mutation p.S314A 0.39 tolerated(0.64) probably_damaging(0.978) TCGA-VN-A88R-01 8 55537905 55537905 A C RP1 Missense_Mutation p.E488A 0.37 deleterious(0.02) benign(0.086) TCGA-VN-A88R-01 9 135906362 135906362 G - GTF3C5 5'Flank 0.39 TCGA-VN-A88R-01 9 8460280 8460280 T C PTPRD Intron 0.47 TCGA-VN-A88R-01 X 118222786 118222786 G A KIAA1210 Nonsense_Mutation p.Q803* 0.17 TCGA-VN-A88R-01 X 129208569 129208569 A C ELF4 Missense_Mutation p.S78R 0.83 tolerated(0.41) benign(0.023) TCGA-VN-A943-01 11 118427747 118427747 G C IFT46 Missense_Mutation p.T71S 0.52 tolerated_low_confidence(0.23) benign(0.017) TCGA-VN-A943-01 11 125647233 125647233 C T PATE2 3'UTR 0.38 TCGA-VN-A943-01 11 67165098 67165098 G C RAD9A 3'UTR 0.73 TCGA-VN-A943-01 12 124824556 124824556 G A NCOR2 Silent p.L1895L 0.29 TCGA-VN-A943-01 12 95914854 95914854 C A USP44 Missense_Mutation p.D620Y 0.28 deleterious(0) probably_damaging(0.964) TCGA-VN-A943-01 14 70633727 70633727 G A SLC8A3 Silent p.D471D 0.44 TCGA-VN-A943-01 16 67233242 67233242 C T ELMO3 Missense_Mutation p.R58W 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-VN-A943-01 17 40734779 40734779 C G FAM134C Missense_Mutation p.E286Q 0.04 deleterious(0) probably_damaging(0.999) TCGA-VN-A943-01 19 3551146 3551146 G A MFSD12 Silent p.C115C 0.50 TCGA-VN-A943-01 19 7965073 7965073 G A LRRC8E Missense_Mutation p.V556I 0.09 tolerated(0.21) probably_damaging(0.923) TCGA-VN-A943-01 1 222713413 222713413 G T HHIPL2 Silent p.G463G 0.04 TCGA-VN-A943-01 1 237947547 237947547 G A RYR2 Missense_Mutation p.E4179K 0.12 possibly_damaging(0.89) TCGA-VN-A943-01 1 36474313 36474313 T C AGO3 Silent p.H272H 0.06 TCGA-VN-A943-01 20 30584394 30584394 C T XKR7 Missense_Mutation p.R292W 0.09 deleterious(0.02) possibly_damaging(0.849) TCGA-VN-A943-01 20 36641587 36641587 G C TTI1 Missense_Mutation p.P211R 0.07 deleterious(0) probably_damaging(1) TCGA-VN-A943-01 20 62200342 62200342 G A HELZ2 Missense_Mutation p.R367W 0.09 deleterious(0.02) benign(0.01) TCGA-VN-A943-01 22 25627656 25627656 G T CRYBB2 Missense_Mutation p.A179S 0.44 tolerated(0.07) possibly_damaging(0.868) TCGA-VN-A943-01 2 100020239 100020239 G T REV1 Missense_Mutation p.Q1029K 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-VN-A943-01 2 166848827 166848827 G A SCN1A Missense_Mutation p.A1653V 0.36 deleterious(0) probably_damaging(0.994) TCGA-VN-A943-01 3 115805294 115805294 G A LSAMP Missense_Mutation p.R89C 0.53 deleterious(0.02) possibly_damaging(0.86) TCGA-VN-A943-01 3 156009785 156009785 C G KCNAB1 Intron 0.08 TCGA-VN-A943-01 3 179287979 179287979 G A ACTL6A Missense_Mutation p.R76H 0.08 tolerated(1) benign(0.002) TCGA-VN-A943-01 3 58097609 58097609 G C FLNB Splice_Site p.X859_splice 0.33 TCGA-VN-A943-01 4 167713337 167713337 C T SPOCK3 Silent p.L234L 0.38 TCGA-VN-A943-01 4 7774516 7774516 A - AFAP1 Intron 0.50 TCGA-VN-A943-01 5 74017114 74017114 C A GFM2 3'UTR 0.55 TCGA-VN-A943-01 6 32185012 32185012 G A NOTCH4 Silent p.I552I 0.38 TCGA-VN-A943-01 6 35392557 35392557 G T PPARD Splice_Site p.X360_splice 0.33 TCGA-VN-A943-01 6 47976814 47976814 C T PTCHD4 Missense_Mutation p.G155R 0.11 deleterious(0) probably_damaging(1) TCGA-VN-A943-01 9 32973551 32973551 A C APTX Missense_Mutation p.L325R 0.16 tolerated(0.12) benign(0.042) TCGA-VN-A943-01 X 107037634 107037634 T C NCBP2L Missense_Mutation p.S62P 0.89 deleterious(0) possibly_damaging(0.699) TCGA-VN-A943-01 X 153420113 153420113 G A OPN1LW Missense_Mutation p.G215R 0.44 tolerated(0.21) probably_damaging(1) TCGA-VN-A943-01 X 50377643 50377643 G T SHROOM4 Missense_Mutation p.T477N 0.92 tolerated(0.28) benign(0.003) TCGA-VP-A872-01 10 48739392 48739392 G A PTPN20B Missense_Mutation p.T398M 0.17 deleterious(0) probably_damaging(1) TCGA-VP-A872-01 10 92677496 92677496 C A ANKRD1 Missense_Mutation p.R182L 0.30 deleterious(0.01) possibly_damaging(0.689) TCGA-VP-A872-01 11 103907539 103907539 C T DDI1 5'UTR 0.32 TCGA-VP-A872-01 11 122930969 122930969 G T HSPA8 Missense_Mutation p.T140N 0.09 tolerated_low_confidence(0.45) benign(0.005) TCGA-VP-A872-01 11 75438518 75438518 C A MOGAT2 Nonsense_Mutation p.Y103* 0.08 TCGA-VP-A872-01 12 50025308 50025308 C T PRPF40B Missense_Mutation p.A70V 0.21 tolerated(0.11) unknown(0) TCGA-VP-A872-01 12 7302119 7302120 - G CLSTN3 Frame_Shift_Ins p.T693Dfs*8 0.14 TCGA-VP-A872-01 14 107078510 107078510 C T IGHV1-58 Missense_Mutation p.V72I 0.21 benign(0.102) TCGA-VP-A872-01 15 40707600 40707600 G A IVD Silent p.G296G 0.09 TCGA-VP-A872-01 17 62045515 62045515 C T SCN4A Missense_Mutation p.G302S 0.04 tolerated_low_confidence(0.47) benign(0.003) TCGA-VP-A872-01 17 66980239 66980239 G A ABCA9 Missense_Mutation p.A1486V 0.18 deleterious(0.01) possibly_damaging(0.762) TCGA-VP-A872-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.27 deleterious(0) probably_damaging(0.997) TCGA-VP-A872-01 19 1043361 1043361 C T ABCA7 Silent p.A273A 0.24 TCGA-VP-A872-01 19 38968362 38968362 G A RYR1 Missense_Mutation p.V1436M 0.30 probably_damaging(0.999) TCGA-VP-A872-01 19 56369854 56369854 C - NLRP4 Frame_Shift_Del p.Q366Rfs*31 0.12 TCGA-VP-A872-01 1 186304579 186304579 G A TPR Missense_Mutation p.A1601V 0.06 possibly_damaging(0.499) TCGA-VP-A872-01 1 248458642 248458642 G A OR2T12 Missense_Mutation p.A80V 0.19 tolerated(0.19) benign(0.124) TCGA-VP-A872-01 1 46769398 46769398 C T UQCRH 5'UTR 0.21 TCGA-VP-A872-01 20 58519366 58519366 A G FAM217B Missense_Mutation p.D123G 0.37 deleterious(0.01) possibly_damaging(0.865) TCGA-VP-A872-01 22 50555697 50555697 C T MOV10L1 Silent p.R457R 0.21 TCGA-VP-A872-01 2 113300244 113300244 T A POLR1B Missense_Mutation p.V58E 0.31 deleterious(0.03) possibly_damaging(0.76) TCGA-VP-A872-01 2 242373718 242373718 G A FARP2 Missense_Mutation p.G338D 0.09 deleterious(0) probably_damaging(1) TCGA-VP-A872-01 2 73161021 73161021 C T EMX1 Missense_Mutation p.R271W 0.31 deleterious(0) probably_damaging(0.999) TCGA-VP-A872-01 3 121207488 121207489 - A POLQ Frame_Shift_Ins p.L1430Ffs*5 0.17 TCGA-VP-A872-01 4 155157233 155157233 T A DCHS2 Missense_Mutation p.K2402N 0.06 deleterious(0) probably_damaging(0.978) TCGA-VP-A872-01 5 140712483 140712483 C T PCDHGA1 Silent p.D744D 0.20 TCGA-VP-A872-01 5 14359623 14359623 G A TRIO Missense_Mutation p.E792K 0.15 probably_damaging(0.988) TCGA-VP-A872-01 5 145849150 145849151 - CC TCERG1 Frame_Shift_Ins p.Q416Pfs*12 0.26 TCGA-VP-A872-01 6 32063700 32063700 C T TNXB Missense_Mutation p.G644S 0.44 probably_damaging(0.994) TCGA-VP-A872-01 7 14647098 14647098 C T DGKB Missense_Mutation p.R466H 0.14 deleterious(0) possibly_damaging(0.658) TCGA-VP-A872-01 9 117849182 117849182 G A TNC Silent p.G276G 0.10 TCGA-VP-A872-01 9 131455036 131455036 A G SET Missense_Mutation p.I137V 0.24 tolerated(0.06) possibly_damaging(0.58) TCGA-VP-A875-01 10 101802208 101802208 C T CPN1 Silent p.R451R 0.14 TCGA-VP-A875-01 10 27436406 27436406 T C YME1L1 Intron 0.17 TCGA-VP-A875-01 11 20949942 20949942 G A NELL1 Missense_Mutation p.R305Q 0.17 tolerated(0.09) possibly_damaging(0.77) TCGA-VP-A875-01 12 120621408 120621408 C T GCN1L1 Silent p.S130S 0.06 TCGA-VP-A875-01 12 54756711 54756711 C A GPR84 Missense_Mutation p.D309Y 0.15 deleterious(0.01) possibly_damaging(0.612) TCGA-VP-A875-01 12 57674138 57674138 C A R3HDM2 Intron 0.12 TCGA-VP-A875-01 13 46050413 46050413 A G COG3 Silent p.T84T 0.08 TCGA-VP-A875-01 14 88707090 88707090 G A KCNK10 Silent p.L159L 0.05 TCGA-VP-A875-01 15 83710528 83710528 G A BTBD1 Missense_Mutation p.L272F 0.19 tolerated(0.08) benign(0.25) TCGA-VP-A875-01 16 2512433 2512433 C T C16orf59 Silent p.P256P 0.12 TCGA-VP-A875-01 16 5058605 5058605 C T SEC14L5 Missense_Mutation p.R586C 0.17 tolerated(0.2) benign(0.009) TCGA-VP-A875-01 16 7647415 7647415 G A RBFOX1 Missense_Mutation p.V222I 0.07 deleterious(0.03) benign(0.103) TCGA-VP-A875-01 17 55197639 55197639 A G AKAP1 Missense_Mutation p.E889G 0.54 deleterious(0.02) benign(0.049) TCGA-VP-A875-01 17 8045265 8045265 G A PER1 Missense_Mutation p.T1153I 0.11 deleterious(0) benign(0.112) TCGA-VP-A875-01 18 12360038 12360038 A G AFG3L2 Missense_Mutation p.F214L 0.18 deleterious(0) probably_damaging(0.914) TCGA-VP-A875-01 19 501772 501772 C T MADCAM1 Silent p.P257P 0.38 TCGA-VP-A875-01 1 114301350 114301350 A C PHTF1 5'UTR 0.06 TCGA-VP-A875-01 1 158735834 158735834 C A OR6N1 Silent p.L213L 0.06 TCGA-VP-A875-01 1 201044699 201044699 G C CACNA1S Missense_Mutation p.I624M 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-VP-A875-01 1 201046060 201046060 G A CACNA1S Silent p.I605I 0.43 TCGA-VP-A875-01 1 201046222 201046222 G A CACNA1S Silent p.S551S 0.27 TCGA-VP-A875-01 1 67558662 67558662 T C C1orf141 3'UTR 0.08 TCGA-VP-A875-01 20 19701791 19701791 G A SLC24A3 3'UTR 0.18 TCGA-VP-A875-01 21 43988479 43988479 A - SLC37A1 Frame_Shift_Del p.S453Vfs*2 0.29 TCGA-VP-A875-01 22 42461779 42461779 G A NAGA Missense_Mutation p.P241L 0.09 deleterious(0.01) benign(0.027) TCGA-VP-A875-01 2 166848111 166848111 G A SCN1A Nonsense_Mutation p.R1892* 0.15 TCGA-VP-A875-01 2 226447087 226447087 G T NYAP2 Silent p.L318L 0.23 TCGA-VP-A875-01 2 27351917 27351917 T G ABHD1 Missense_Mutation p.L127R 0.28 deleterious(0) probably_damaging(0.999) TCGA-VP-A875-01 3 101023020 101023020 T C IMPG2 Silent p.E157E 0.16 TCGA-VP-A875-01 3 172096070 172096070 A G FNDC3B Missense_Mutation p.I1007V 0.45 tolerated(0.36) benign(0.124) TCGA-VP-A875-01 3 179605498 179605498 C T PEX5L Silent p.S91S 0.21 TCGA-VP-A875-01 3 52559262 52559262 A T NT5DC2 Missense_Mutation p.V390E 0.12 deleterious(0) probably_damaging(1) TCGA-VP-A875-01 3 8787573 8787573 G A CAV3 3'UTR 0.67 TCGA-VP-A875-01 4 187201491 187201491 G A F11 Missense_Mutation p.C327Y 0.10 deleterious(0.01) probably_damaging(1) TCGA-VP-A875-01 5 110097084 110097084 C T SLC25A46 Silent p.L287L 0.14 TCGA-VP-A875-01 5 139060727 139060727 G T CXXC5 Missense_Mutation p.D207Y 0.21 deleterious(0) probably_damaging(0.985) TCGA-VP-A875-01 5 140475876 140475876 C T PCDHB2 Missense_Mutation p.P501L 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.703) TCGA-VP-A875-01 5 153065834 153065834 G A GRIA1 Missense_Mutation p.R370H 0.15 tolerated(0.35) benign(0.102) TCGA-VP-A875-01 6 32148171 32148171 C T RNF5 3'UTR 0.16 TCGA-VP-A875-01 7 107703416 107703416 C T LAMB4 Missense_Mutation p.V1029M 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-VP-A875-01 7 11676141 11676141 C T THSD7A Missense_Mutation p.G213E 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-VP-A875-01 7 151884803 151884803 G A KMT2C Missense_Mutation p.A1597V 0.05 benign(0.003) TCGA-VP-A875-01 7 155301776 155301776 G A CNPY1 5'UTR 0.13 TCGA-VP-A875-01 7 5568828 5568828 G A ACTB Silent p.P109P 0.20 TCGA-VP-A875-01 8 100789020 100789020 G C VPS13B Missense_Mutation p.G2447A 0.46 deleterious(0.04) probably_damaging(0.91) TCGA-VP-A875-01 8 12952652 12952652 C T DLC1 Silent p.P1090P 0.12 TCGA-VP-A875-01 8 37732086 37732086 C T RAB11FIP1 Silent p.P523P 0.14 TCGA-VP-A875-01 8 53079457 53079457 G A ST18 Missense_Mutation p.R387C 0.11 deleterious(0) probably_damaging(0.98) TCGA-VP-A875-01 9 38396827 38396827 A G ALDH1B1 Missense_Mutation p.Q361R 0.07 deleterious(0.01) probably_damaging(0.987) TCGA-VP-A875-01 X 66905906 66905906 G A AR Missense_Mutation p.R608Q 0.26 deleterious(0) possibly_damaging(0.802) TCGA-VP-A876-01 10 104232673 104232673 C T TMEM180 Silent p.D297D 0.06 TCGA-VP-A876-01 10 22615874 22615874 T A BMI1 Nonsense_Mutation p.C56* 0.36 TCGA-VP-A876-01 11 30601959 30601964 AGAGCA - MPPED2 5'UTR 0.32 TCGA-VP-A876-01 11 59211176 59211176 C T OR5A1 Missense_Mutation p.H179Y 0.36 deleterious(0) probably_damaging(1) TCGA-VP-A876-01 12 120568995 120568995 C T GCN1L1 Silent p.A2519A 0.10 TCGA-VP-A876-01 15 79749547 79749547 G A KIAA1024 Missense_Mutation p.R353H 0.07 tolerated(0.06) benign(0.022) TCGA-VP-A876-01 16 31485243 31485243 C T TGFB1I1 Silent p.L90L 0.07 TCGA-VP-A876-01 16 71718413 71718413 G A PHLPP2 Missense_Mutation p.A234V 0.05 deleterious(0.03) possibly_damaging(0.656) TCGA-VP-A876-01 17 39680513 39680513 T A KRT19 Missense_Mutation p.E277V 0.08 deleterious(0.02) benign(0.109) TCGA-VP-A876-01 17 42852594 42852594 G C ADAM11 Missense_Mutation p.R412P 0.37 deleterious(0.02) possibly_damaging(0.886) TCGA-VP-A876-01 17 7577126 7577126 T A TP53 Missense_Mutation p.E271V 0.80 deleterious(0) probably_damaging(0.999) TCGA-VP-A876-01 19 37310530 37310530 G A ZNF790 Missense_Mutation p.S239L 0.40 deleterious(0.01) possibly_damaging(0.715) TCGA-VP-A876-01 1 12446347 12446347 A G VPS13D Missense_Mutation p.Q3863R 0.35 benign(0.08) TCGA-VP-A876-01 1 159846529 159846529 C T CCDC19 Missense_Mutation p.R390Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-VP-A876-01 20 1559027 1559027 G A RP4-576H24.4 Silent p.D129D 0.06 TCGA-VP-A876-01 20 9402051 9402051 G C PLCB4 Missense_Mutation p.M742I 0.06 tolerated(0.56) benign(0.11) TCGA-VP-A876-01 22 24761555 24761555 C T SPECC1L Missense_Mutation p.S980F 0.11 deleterious(0.04) probably_damaging(0.909) TCGA-VP-A876-01 22 34046652 34046652 C T LARGE Missense_Mutation p.G37R 0.14 tolerated_low_confidence(0.08) possibly_damaging(0.526) TCGA-VP-A876-01 3 38591846 38591846 G T SCN5A Missense_Mutation p.P2006H 0.10 tolerated_low_confidence(0.33) possibly_damaging(0.729) TCGA-VP-A876-01 5 1322992 1322992 C T CLPTM1L Missense_Mutation p.G439R 0.30 deleterious(0) possibly_damaging(0.809) TCGA-VP-A876-01 7 39606042 39606042 T C YAE1D1 Silent p.L9L 0.17 TCGA-VP-A876-01 8 121237425 121237425 A T COL14A1 Silent p.S612S 0.48 TCGA-VP-A876-01 9 101133846 101133846 G A GABBR2 Missense_Mutation p.T557I 0.38 tolerated(0.26) benign(0.134) TCGA-VP-A876-01 9 1057164 1057164 T C DMRT2 Missense_Mutation p.F526S 0.46 deleterious_low_confidence(0.03) benign(0.062) TCGA-VP-A876-01 9 130982360 130982360 G A DNM1 Missense_Mutation p.R228H 0.35 deleterious(0) probably_damaging(0.998) TCGA-VP-A876-01 X 15373392 15373392 G A FIGF Missense_Mutation p.S174L 0.09 deleterious(0.02) benign(0.095) TCGA-VP-A876-01 X 2936617 2936617 C T ARSH Silent p.H269H 0.55 TCGA-VP-A876-01 X 47835730 47835730 T C ZNF182 Missense_Mutation p.T586A 0.20 tolerated(0.06) possibly_damaging(0.831) TCGA-VP-A878-01 10 288038 288041 CAAT - ZMYND11 Frame_Shift_Del p.N304Kfs*33 0.20 TCGA-VP-A878-01 10 55591154 55591154 C G PCDH15 Missense_Mutation p.G1375R 0.06 deleterious(0) probably_damaging(1) TCGA-VP-A878-01 10 98078274 98078274 C A DNTT Missense_Mutation p.H123Q 0.15 deleterious(0) probably_damaging(0.985) TCGA-VP-A878-01 11 46694238 46694238 A G ATG13 3'UTR 0.24 TCGA-VP-A878-01 11 55541365 55541365 A T OR5D13 Missense_Mutation p.Y151F 0.18 deleterious(0.01) possibly_damaging(0.739) TCGA-VP-A878-01 11 884111 884111 C A CHID1 Missense_Mutation p.D279Y 0.17 deleterious(0) possibly_damaging(0.838) TCGA-VP-A878-01 12 55863538 55863538 G A OR6C70 Missense_Mutation p.R129C 0.17 deleterious_low_confidence(0) benign(0.387) TCGA-VP-A878-01 16 2161025 2161025 G A PKD1 Silent p.G1381G 0.16 TCGA-VP-A878-01 16 4513683 4513683 C T NMRAL1 Missense_Mutation p.R233H 0.17 deleterious(0.01) benign(0.154) TCGA-VP-A878-01 17 10302114 10302114 G C MYH8 Missense_Mutation p.L1318V 0.20 deleterious(0.03) benign(0.414) TCGA-VP-A878-01 17 11522871 11522871 A G DNAH9 Missense_Mutation p.N375D 0.17 benign(0.005) TCGA-VP-A878-01 17 17921927 17921927 C T ATPAF2 Missense_Mutation p.G269D 0.20 deleterious(0) possibly_damaging(0.836) TCGA-VP-A878-01 17 47699392 47699392 T - SPOP Frame_Shift_Del p.N39Ifs*27 0.20 TCGA-VP-A878-01 1 158606472 158606472 G A SPTA1 Missense_Mutation p.R1757C 0.20 deleterious(0) probably_damaging(0.982) TCGA-VP-A878-01 1 162748420 162748420 G A DDR2 Nonsense_Mutation p.W778* 0.21 TCGA-VP-A878-01 1 186097410 186097410 C A HMCN1 Missense_Mutation p.N4297K 0.20 probably_damaging(0.996) TCGA-VP-A878-01 1 2411397 2411397 C T PLCH2 Missense_Mutation p.R139C 0.18 deleterious(0) probably_damaging(0.988) TCGA-VP-A878-01 1 43828701 43828701 G A CDC20 Silent p.L467L 0.28 TCGA-VP-A878-01 1 5940290 5940290 C T NPHP4 Missense_Mutation p.C832Y 0.17 deleterious(0.02) possibly_damaging(0.861) TCGA-VP-A878-01 1 97700433 97700433 A G DPYD Missense_Mutation p.L806P 0.29 deleterious(0) probably_damaging(0.994) TCGA-VP-A878-01 22 24086389 24086389 G A ZNF70 Silent p.C313C 0.19 TCGA-VP-A878-01 2 178402827 178402827 A G AGPS Silent p.L627L 0.20 TCGA-VP-A878-01 2 179629396 179629396 G A TTN Silent p.G3282G 0.18 TCGA-VP-A878-01 2 232601992 232601992 G A PDE6D Silent p.F92F 0.28 TCGA-VP-A878-01 4 147628687 147628687 G A TTC29 Silent p.S449S 0.09 TCGA-VP-A878-01 4 36130197 36130197 G A ARAP2 Silent p.L1200L 0.23 TCGA-VP-A878-01 5 31317987 31317987 C T CDH6 Missense_Mutation p.T613M 0.22 tolerated(0.09) probably_damaging(0.994) TCGA-VP-A878-01 5 55248076 55248076 A C IL6ST Splice_Site p.X518_splice 0.23 TCGA-VP-A878-01 6 3127486 3127486 G T BPHL Missense_Mutation p.E74D 0.19 tolerated(0.62) benign(0.003) TCGA-VP-A878-01 6 35277530 35277530 C T DEF6 Silent p.D60D 0.27 TCGA-VP-A878-01 7 104747889 104747890 AA - KMT2E Frame_Shift_Del p.K996Dfs*8 0.17 TCGA-VP-A878-01 7 107431510 107431510 G A SLC26A3 Missense_Mutation p.L185F 0.17 deleterious(0.01) benign(0.102) TCGA-VP-A878-01 7 75633123 75633123 G A STYXL1 Missense_Mutation p.P217L 0.27 tolerated(0.8) benign(0.021) TCGA-VP-A878-01 7 94052353 94052353 C T COL1A2 Nonsense_Mutation p.R830* 0.17 TCGA-VP-A878-01 7 98515241 98515241 A G TRRAP Missense_Mutation p.D854G 0.20 probably_damaging(1) TCGA-VP-A878-01 X 3002434 3002434 A G ARSF Missense_Mutation p.E186G 0.15 tolerated(0.14) benign(0.02) TCGA-VP-A878-01 X 76855227 76855227 C A ATRX Missense_Mutation p.M1920I 0.42 benign(0.05) TCGA-VP-A879-01 10 129207655 129207655 G A DOCK1 Missense_Mutation p.S1427N 0.10 tolerated(1) benign(0) TCGA-VP-A879-01 10 92631676 92631676 A G RPP30 5'Flank 0.07 TCGA-VP-A879-01 11 59210893 59210893 G T OR5A1 Missense_Mutation p.M84I 0.05 deleterious(0.01) benign(0.031) TCGA-VP-A879-01 11 62484485 62484488 TCTG A HNRNPUL2 In_Frame_Del p.Q652_N653delinsY 0.25 TCGA-VP-A879-01 11 6913226 6913226 C T OR2D2 Missense_Mutation p.R169Q 0.16 tolerated(0.59) benign(0.007) TCGA-VP-A879-01 13 113738343 113738343 G T MCF2L Missense_Mutation p.D675Y 0.05 deleterious(0.01) possibly_damaging(0.86) TCGA-VP-A879-01 13 115027372 115027372 A G CDC16 Missense_Mutation p.D442G 0.06 deleterious(0.02) benign(0.23) TCGA-VP-A879-01 13 21373356 21373356 A G XPO4 Missense_Mutation p.L757S 0.04 deleterious(0.02) possibly_damaging(0.852) TCGA-VP-A879-01 13 88329858 88329858 C T SLITRK5 Missense_Mutation p.P739S 0.16 tolerated(0.12) benign(0.082) TCGA-VP-A879-01 15 34129867 34129867 G T RYR3 Missense_Mutation p.V3896F 0.38 probably_damaging(0.999) TCGA-VP-A879-01 15 72037466 72037466 G A THSD4 Missense_Mutation p.R643H 0.22 tolerated(0.38) benign(0.005) TCGA-VP-A879-01 15 77425652 77425652 G A PEAK1 Missense_Mutation p.R1258C 0.10 tolerated(0.21) benign(0.006) TCGA-VP-A879-01 16 30198525 30198525 G A CORO1A Missense_Mutation p.R206H 0.06 tolerated(0.05) possibly_damaging(0.891) TCGA-VP-A879-01 17 60685506 60685506 A G TLK2 Silent p.A692A 0.15 TCGA-VP-A879-01 17 73827403 73827403 G A UNC13D Missense_Mutation p.T825I 0.35 tolerated(0.59) benign(0.247) TCGA-VP-A879-01 17 8448867 8448867 G A MYH10 Missense_Mutation p.R444C 0.28 probably_damaging(0.949) TCGA-VP-A879-01 19 15582860 15582860 C T PGLYRP2 Missense_Mutation p.G395D 0.13 deleterious(0.03) probably_damaging(0.959) TCGA-VP-A879-01 19 55711746 55711746 G A PTPRH Silent p.D426D 0.17 TCGA-VP-A879-01 1 160460930 160460930 G T SLAMF6 Missense_Mutation p.Q211K 0.20 tolerated(0.26) benign(0.146) TCGA-VP-A879-01 1 181725150 181725150 C T CACNA1E Missense_Mutation p.R1350C 0.09 deleterious(0) probably_damaging(0.978) TCGA-VP-A879-01 1 22973820 22973820 G A C1QC Silent p.G94G 0.21 TCGA-VP-A879-01 1 234536985 234536985 C T TARBP1 Missense_Mutation p.R1338H 0.19 deleterious(0) probably_damaging(0.999) TCGA-VP-A879-01 1 23782631 23782631 G A ASAP3 Silent p.I62I 0.22 TCGA-VP-A879-01 22 17586829 17586829 A G IL17RA Missense_Mutation p.T344A 0.06 tolerated(0.15) benign(0.036) TCGA-VP-A879-01 22 25147435 25147435 A G PIWIL3 Silent p.D336D 0.26 TCGA-VP-A879-01 22 37602985 37602985 G A SSTR3 Silent p.P286P 0.16 TCGA-VP-A879-01 2 11955246 11955246 G A LPIN1 Missense_Mutation p.R810H 0.12 deleterious(0) probably_damaging(1) TCGA-VP-A879-01 2 141072599 141072599 C A LRP1B Missense_Mutation p.C4237F 0.05 benign(0.308) TCGA-VP-A879-01 2 25966130 25966130 T G ASXL2 Missense_Mutation p.S1026R 0.15 deleterious(0.01) possibly_damaging(0.691) TCGA-VP-A879-01 2 70439876 70439876 C T TIA1 Missense_Mutation p.R379Q 0.21 tolerated(0.47) benign(0.193) TCGA-VP-A879-01 2 89326755 89326755 C T IGKV3-11 Silent p.G86G 0.25 TCGA-VP-A879-01 3 180328481 180328481 A G TTC14 3'UTR 0.31 TCGA-VP-A879-01 3 183490196 183490196 C T YEATS2 Missense_Mutation p.S684F 0.22 deleterious_low_confidence(0) benign(0.068) TCGA-VP-A879-01 4 42024869 42024869 T - SLC30A9 Frame_Shift_Del p.R151Efs*19 0.25 TCGA-VP-A879-01 4 78641641 78641641 G C CNOT6L Missense_Mutation p.L538V 0.04 tolerated(1) benign(0.314) TCGA-VP-A879-01 5 101735275 101735275 C T SLCO6A1 Missense_Mutation p.V600I 0.24 tolerated(0.85) benign(0) TCGA-VP-A879-01 6 118790275 118790275 C T CEP85L Silent p.Q741Q 0.13 TCGA-VP-A879-01 6 26031999 26031999 C T HIST1H3B Missense_Mutation p.C97Y 0.07 tolerated_low_confidence(0.06) benign(0.042) TCGA-VP-A879-01 6 52761716 52761716 G C GSTA3 Missense_Mutation p.T186S 0.11 tolerated(0.17) benign(0.007) TCGA-VP-A879-01 6 84290295 84290295 A G SNAP91 Silent p.L725L 0.14 TCGA-VP-A879-01 7 44080665 44080665 C G DBNL 5'Flank 0.22 TCGA-VP-A879-01 7 47944821 47944821 A C PKD1L1 Missense_Mutation p.F542V 0.18 deleterious(0) possibly_damaging(0.729) TCGA-VP-A879-01 7 48315425 48315425 C A ABCA13 Missense_Mutation p.N2054K 0.11 benign(0.079) TCGA-VP-A879-01 7 51096535 51096535 G C COBL Missense_Mutation p.S753C 0.30 deleterious(0.02) possibly_damaging(0.847) TCGA-VP-A879-01 8 134030207 134030207 G C TG Missense_Mutation p.L2249F 0.35 tolerated(0.92) benign(0.033) TCGA-VP-A879-01 8 82626245 82626245 G A ZFAND1 Nonsense_Mutation p.R130* 0.05 TCGA-VP-A879-01 9 105767017 105767017 C A CYLC2 Missense_Mutation p.P74Q 0.24 deleterious(0) probably_damaging(1) TCGA-VP-A879-01 9 139760662 139760662 G T EDF1 Missense_Mutation p.P17T 0.13 deleterious(0.01) benign(0.062) TCGA-VP-A879-01 9 33986782 33986782 G A UBAP2 Missense_Mutation p.R166C 0.04 deleterious(0) probably_damaging(0.98) TCGA-VP-A879-01 9 8317860 8317860 T A PTPRD 3'UTR 0.04 TCGA-VP-A879-01 9 8636728 8636728 C A PTPRD Nonsense_Mutation p.G61* 0.10 TCGA-VP-A879-01 X 100912590 100912590 A C ARMCX2 5'UTR 0.11 TCGA-VP-A879-01 X 151303840 151303840 G T MAGEA10 Missense_Mutation p.Q85K 0.04 tolerated(0.06) possibly_damaging(0.516) TCGA-VP-A879-01 X 55650284 55650284 C T FOXR2 Missense_Mutation p.A47V 0.08 tolerated(0.13) benign(0.046) TCGA-VP-A87B-01 11 72290360 72290360 C T PDE2A Missense_Mutation p.R775H 0.15 deleterious(0) probably_damaging(0.987) TCGA-VP-A87B-01 11 94231465 94231465 C A ANKRD49 Missense_Mutation p.H163N 0.27 tolerated(0.28) benign(0.06) TCGA-VP-A87B-01 12 14940329 14940329 C A WBP11 Silent p.G532G 0.45 TCGA-VP-A87B-01 12 14993733 14993733 T C ART4 Missense_Mutation p.I167V 0.34 tolerated(0.16) benign(0.027) TCGA-VP-A87B-01 12 56031259 56031259 G A OR10P1 Missense_Mutation p.R195K 0.33 tolerated(1) benign(0.004) TCGA-VP-A87B-01 13 76055681 76055681 C T TBC1D4 Missense_Mutation p.G75R 1.00 tolerated(0.55) benign(0.148) TCGA-VP-A87B-01 14 106330423 106330423 A G IGHD7-27 3'Flank 0.64 TCGA-VP-A87B-01 14 23417142 23417142 C A HAUS4 Missense_Mutation p.D215Y 0.42 deleterious(0.01) possibly_damaging(0.83) TCGA-VP-A87B-01 14 37149709 37149709 C G SLC25A21 3'UTR 0.36 TCGA-VP-A87B-01 15 45555257 45555257 A T SLC28A2 Splice_Site p.X88_splice 0.18 TCGA-VP-A87B-01 16 58633154 58633154 G A CNOT1 Nonsense_Mutation p.Q30* 0.06 TCGA-VP-A87B-01 16 67220718 67220718 G A EXOC3L1 Missense_Mutation p.P410S 0.41 deleterious(0) probably_damaging(1) TCGA-VP-A87B-01 16 72108237 72108237 T C HPR Missense_Mutation p.F49S 0.49 deleterious(0) benign(0.01) TCGA-VP-A87B-01 17 18638255 18638255 C T TRIM16L Missense_Mutation p.R177C 0.12 deleterious(0) probably_damaging(0.967) TCGA-VP-A87B-01 17 37883719 37883719 C T ERBB2 Missense_Mutation p.R1111W 0.44 deleterious(0) probably_damaging(0.998) TCGA-VP-A87B-01 17 47696426 47696426 A C SPOP Missense_Mutation p.F133V 0.41 deleterious(0.03) probably_damaging(0.998) TCGA-VP-A87B-01 19 54760504 54760504 G A LILRB5 Missense_Mutation p.A68V 0.20 tolerated(0.51) benign(0.117) TCGA-VP-A87B-01 1 114442579 114442579 C T AP4B1 Missense_Mutation p.G354E 0.40 tolerated(0.61) benign(0.091) TCGA-VP-A87B-01 1 166890544 166890544 G C ILDR2 Missense_Mutation p.D428E 0.33 deleterious(0) possibly_damaging(0.559) TCGA-VP-A87B-01 1 169541549 169541549 C G F5 Missense_Mutation p.G95R 0.08 deleterious(0.03) probably_damaging(1) TCGA-VP-A87B-01 1 170959063 170959063 T C MROH9 Missense_Mutation p.L316S 0.44 deleterious(0) probably_damaging(0.993) TCGA-VP-A87B-01 1 21009257 21009257 G A KIF17 Silent p.A784A 0.23 TCGA-VP-A87B-01 1 216166392 216166392 C T USH2A Missense_Mutation p.V2259I 0.36 benign(0.003) TCGA-VP-A87B-01 1 22168751 22168751 G T HSPG2 Silent p.P3011P 0.06 TCGA-VP-A87B-01 20 24565546 24565546 C T SYNDIG1 Missense_Mutation p.R179W 0.16 deleterious(0) probably_damaging(1) TCGA-VP-A87B-01 3 184910382 184910382 G A EHHADH Missense_Mutation p.R602W 0.37 deleterious(0) benign(0.058) TCGA-VP-A87B-01 3 38158019 38158019 G C DLEC1 Missense_Mutation p.G1311A 0.53 deleterious(0) probably_damaging(0.998) TCGA-VP-A87B-01 5 140772579 140772579 G T PCDHGA8 Missense_Mutation p.V67F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-VP-A87B-01 5 176696757 176696757 G A NSD1 Missense_Mutation p.V1820M 0.38 deleterious(0) probably_damaging(0.968) TCGA-VP-A87B-01 6 110726001 110726001 G A DDO Missense_Mutation p.A173V 0.85 tolerated(0.24) benign(0.005) TCGA-VP-A87B-01 6 66204918 66204918 C T EYS Missense_Mutation p.R129K 0.41 tolerated_low_confidence(1) benign(0.001) TCGA-VP-A87B-01 6 87968799 87968799 G T ZNF292 Missense_Mutation p.V1818F 0.28 tolerated_low_confidence(0.4) benign(0.127) TCGA-VP-A87B-01 7 111629104 111629104 G A DOCK4 Missense_Mutation p.R144C 0.44 deleterious(0) possibly_damaging(0.776) TCGA-VP-A87B-01 7 1937885 1937885 C T MAD1L1 Missense_Mutation p.R650Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-VP-A87B-01 7 24892244 24892244 G A OSBPL3 Missense_Mutation p.T346I 0.13 tolerated(0.06) benign(0.128) TCGA-VP-A87B-01 7 31016135 31016135 A G GHRHR Missense_Mutation p.I356V 0.34 tolerated(1) benign(0.012) TCGA-VP-A87B-01 7 33296923 33296923 G T BBS9 Missense_Mutation p.R173I 0.35 deleterious(0) probably_damaging(0.988) TCGA-VP-A87B-01 7 82545841 82545841 G A PCLO Nonsense_Mutation p.R3821* 0.58 TCGA-VP-A87B-01 7 87536921 87536921 G C DBF4 Missense_Mutation p.V490L 0.05 tolerated(0.47) benign(0.002) TCGA-VP-A87B-01 8 32611943 32611943 G T NRG1 Missense_Mutation p.A257S 0.50 deleterious(0) possibly_damaging(0.609) TCGA-VP-A87B-01 X 128944944 128944944 C T ZDHHC9 Silent p.E305E 0.73 TCGA-VP-A87B-01 X 37028251 37028251 C T FAM47C Missense_Mutation p.R590W 0.06 deleterious(0.01) possibly_damaging(0.835) TCGA-VP-A87C-01 10 26790053 26790053 G C APBB1IP Intron 0.20 TCGA-VP-A87C-01 11 5969418 5969418 A G OR56A3 Missense_Mutation p.N281S 0.24 tolerated(0.12) probably_damaging(1) TCGA-VP-A87C-01 11 66291318 66291318 C T BBS1 Missense_Mutation p.R359C 0.23 deleterious(0) benign(0.079) TCGA-VP-A87C-01 11 71939260 71939260 G C INPPL1 Missense_Mutation p.R70P 0.16 deleterious(0) probably_damaging(1) TCGA-VP-A87C-01 11 89088163 89088164 - T NOX4 Frame_Shift_Ins p.I395Nfs*8 0.09 TCGA-VP-A87C-01 12 27553667 27553667 C G ARNTL2 Missense_Mutation p.R374G 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-VP-A87C-01 12 80647295 80647295 C T OTOGL Silent p.C436C 0.22 TCGA-VP-A87C-01 14 56079014 56079014 A G KTN1 Missense_Mutation p.D83G 0.19 deleterious(0) possibly_damaging(0.753) TCGA-VP-A87C-01 16 1556991 1556991 T C TELO2 Missense_Mutation p.L722P 0.29 deleterious(0) probably_damaging(0.99) TCGA-VP-A87C-01 17 72363725 72363725 T C GPR142 Silent p.G27G 0.21 TCGA-VP-A87C-01 19 10781285 10781286 - T ILF3 Splice_Site p.X1_splice 0.11 TCGA-VP-A87C-01 19 12875684 12875684 C T HOOK2 Missense_Mutation p.A591T 0.06 deleterious(0.01) benign(0.009) TCGA-VP-A87C-01 19 17329134 17329134 C G USE1 Intron 0.26 TCGA-VP-A87C-01 1 157804497 157804497 G T CD5L Missense_Mutation p.L140M 0.19 deleterious(0) probably_damaging(1) TCGA-VP-A87C-01 20 34240746 34240746 G A RBM12 Silent p.P833P 0.06 TCGA-VP-A87C-01 2 163279881 163279881 C T KCNH7 Missense_Mutation p.A707T 0.20 deleterious(0.03) possibly_damaging(0.67) TCGA-VP-A87C-01 2 198266711 198266711 T C SF3B1 Missense_Mutation p.K741E 0.30 deleterious(0) probably_damaging(0.987) TCGA-VP-A87C-01 2 27802537 27802537 C T C2orf16 Missense_Mutation p.S1033F 0.19 tolerated(0.06) possibly_damaging(0.568) TCGA-VP-A87C-01 3 108572602 108572602 G A TRAT1 Missense_Mutation p.V147I 0.13 tolerated(0.53) benign(0.001) TCGA-VP-A87C-01 3 51673507 51673507 G A RAD54L2 Missense_Mutation p.V645M 0.22 deleterious(0.01) possibly_damaging(0.588) TCGA-VP-A87C-01 4 73186558 73186558 T A ADAMTS3 Silent p.P325P 0.21 TCGA-VP-A87C-01 4 77969728 77969728 A - CCNI Frame_Shift_Del p.Y260Mfs*11 0.10 TCGA-VP-A87C-01 5 79027136 79027136 G T CMYA5 Missense_Mutation p.V850F 0.09 benign(0.04) TCGA-VP-A87C-01 6 52619834 52619834 A G GSTA2 Missense_Mutation p.I60T 0.05 deleterious(0.04) probably_damaging(0.938) TCGA-VP-A87C-01 6 87725488 87725488 G A HTR1E Missense_Mutation p.V146I 0.30 deleterious(0.03) probably_damaging(0.958) TCGA-VP-A87C-01 7 100859736 100859736 T C PLOD3 Missense_Mutation p.E98G 0.21 deleterious(0.02) benign(0.001) TCGA-VP-A87C-01 9 42368368 42368368 C T ANKRD20A2 5'UTR 0.13 TCGA-VP-A87D-01 11 117310071 117310071 G C DSCAML1 Missense_Mutation p.A1412G 0.44 tolerated(0.17) benign(0.096) TCGA-VP-A87D-01 11 56257968 56257968 A C OR5M8 Missense_Mutation p.N293K 0.36 deleterious(0) benign(0.323) TCGA-VP-A87D-01 11 56258436 56258436 C A OR5M8 Missense_Mutation p.K137N 0.39 deleterious(0.02) benign(0.005) TCGA-VP-A87D-01 13 109793599 109793599 C T MYO16 Missense_Mutation p.A1658V 0.36 tolerated_low_confidence(0.39) benign(0.001) TCGA-VP-A87D-01 13 46549634 46549634 C T ZC3H13 Missense_Mutation p.R751Q 0.27 unknown(0) TCGA-VP-A87D-01 14 68066841 68066841 C G PIGH Missense_Mutation p.R27P 0.36 deleterious(0.01) possibly_damaging(0.83) TCGA-VP-A87D-01 14 88729884 88729884 C T KCNK10 Missense_Mutation p.A22T 0.11 tolerated_low_confidence(0.48) benign(0.008) TCGA-VP-A87D-01 15 34528968 34528968 C A SLC12A6 Nonsense_Mutation p.E995* 0.16 TCGA-VP-A87D-01 15 65868658 65868658 C T PTPLAD1 Missense_Mutation p.R344C 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-VP-A87D-01 15 78212576 78212576 C T RP11-114H24.7 Intron 0.11 TCGA-VP-A87D-01 15 83935780 83935780 C T BNC1 Silent p.Q81Q 0.09 TCGA-VP-A87D-01 16 28549403 28549403 G A NUPR1 Silent p.H80H 0.40 TCGA-VP-A87D-01 16 84229837 84229837 G A ADAD2 Missense_Mutation p.A545T 0.14 tolerated(1) benign(0.002) TCGA-VP-A87D-01 17 26687568 26687568 G A TMEM199 Missense_Mutation p.G131E 0.17 tolerated(0.1) benign(0.26) TCGA-VP-A87D-01 17 28748781 28748781 A C CPD Missense_Mutation p.T413P 0.40 deleterious(0) probably_damaging(0.974) TCGA-VP-A87D-01 17 7579408 7579430 CAGGGGCCAGGAGGGGGCTGGTG - TP53 Frame_Shift_Del p.A86Vfs*55 0.22 TCGA-VP-A87D-01 18 8793060 8793060 T A SOGA2 Missense_Mutation p.V651E 0.33 tolerated(0.62) benign(0) TCGA-VP-A87D-01 19 43430713 43430713 G A PSG7 Missense_Mutation p.R289C 0.32 deleterious(0.01) possibly_damaging(0.594) TCGA-VP-A87D-01 19 4491627 4491627 C T HDGFRP2 Missense_Mutation p.S185F 0.14 deleterious(0.01) possibly_damaging(0.683) TCGA-VP-A87D-01 19 45381839 45381839 G A PVRL2 Intron 0.08 TCGA-VP-A87D-01 19 58453386 58453386 C T ZNF256 Missense_Mutation p.E264K 0.16 tolerated(0.28) probably_damaging(0.999) TCGA-VP-A87D-01 19 6707507 6707507 C T C3 Missense_Mutation p.V673M 0.08 deleterious(0.01) benign(0.304) TCGA-VP-A87D-01 19 7976415 7976415 C T MAP2K7 Missense_Mutation p.P344L 0.19 deleterious(0) probably_damaging(0.965) TCGA-VP-A87D-01 19 8654353 8654353 C T ADAMTS10 Missense_Mutation p.V673I 0.07 tolerated(1) possibly_damaging(0.705) TCGA-VP-A87D-01 1 103488491 103488491 T C COL11A1 Missense_Mutation p.Q351R 0.16 possibly_damaging(0.833) TCGA-VP-A87D-01 1 153945522 153945524 GAA - CREB3L4 In_Frame_Del p.K239del 0.15 TCGA-VP-A87D-01 1 156618650 156618650 C T BCAN Nonsense_Mutation p.R354* 0.10 TCGA-VP-A87D-01 1 173495815 173495815 A G SLC9C2 Silent p.A784A 0.12 TCGA-VP-A87D-01 1 181702649 181702649 C T CACNA1E Missense_Mutation p.P1009S 0.31 tolerated(0.25) benign(0.003) TCGA-VP-A87D-01 1 207317225 207317225 G A C4BPA Missense_Mutation p.E503K 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-VP-A87D-01 1 229462538 229462538 C T CCSAP Missense_Mutation p.D195N 0.37 deleterious(0.01) possibly_damaging(0.496) TCGA-VP-A87D-01 1 44435899 44435899 G C DPH2 Missense_Mutation p.G18R 0.09 tolerated(0.3) benign(0.137) TCGA-VP-A87D-01 1 99387499 99387499 C G LPPR5 Missense_Mutation p.R246P 0.16 deleterious(0) probably_damaging(1) TCGA-VP-A87D-01 20 35425294 35425294 C G SOGA1 Missense_Mutation p.G1158A 0.19 tolerated(0.31) benign(0.004) TCGA-VP-A87D-01 20 50803477 50803477 G A ZFP64 Silent p.S60S 0.08 TCGA-VP-A87D-01 21 15592040 15592040 C T RBM11 Nonsense_Mutation p.R85* 0.19 TCGA-VP-A87D-01 22 23029467 23029467 G A IGLV3-25 Silent p.L23L 0.09 TCGA-VP-A87D-01 22 44532375 44532375 G A PARVB Silent p.S256S 0.15 TCGA-VP-A87D-01 2 178481831 178481831 A G TTC30A Silent p.Y533Y 0.36 TCGA-VP-A87D-01 2 179188942 179188942 C T OSBPL6 Silent p.T47T 0.30 TCGA-VP-A87D-01 2 71058207 71058207 G A CD207 Nonsense_Mutation p.R321* 0.17 TCGA-VP-A87D-01 2 85578964 85578964 G A RETSAT Missense_Mutation p.P65L 0.48 deleterious(0) probably_damaging(0.996) TCGA-VP-A87D-01 3 101086791 101086800 TTTAACATCC - SENP7 Frame_Shift_Del p.K284Nfs*11 0.12 TCGA-VP-A87D-01 3 123452701 123452701 G A MYLK Missense_Mutation p.T381I 0.06 tolerated(0.06) benign(0.044) TCGA-VP-A87D-01 3 134885817 134885817 C T EPHB1 Silent p.S576S 0.04 TCGA-VP-A87D-01 3 185769859 185769859 C T ETV5 Missense_Mutation p.R424H 0.11 deleterious(0) probably_damaging(0.999) TCGA-VP-A87D-01 3 48282628 48282628 A G ZNF589 5'UTR 0.19 TCGA-VP-A87D-01 3 49200341 49200341 C T CCDC71 Missense_Mutation p.R434Q 0.12 tolerated(0.62) unknown(0) TCGA-VP-A87D-01 4 126412664 126412664 G A FAT4 Missense_Mutation p.R4896H 0.10 possibly_damaging(0.77) TCGA-VP-A87D-01 4 76811139 76811139 C A PPEF2 Missense_Mutation p.A130S 0.05 tolerated(0.06) probably_damaging(0.999) TCGA-VP-A87D-01 5 140256502 140256502 C T PCDHA12 Missense_Mutation p.A482V 0.05 deleterious_low_confidence(0.04) benign(0.274) TCGA-VP-A87D-01 5 141005788 141005788 T G HDAC3 Missense_Mutation p.Y298S 0.38 deleterious(0) probably_damaging(1) TCGA-VP-A87D-01 6 129371234 129371234 G A LAMA2 Splice_Site p.X95_splice 0.37 TCGA-VP-A87D-01 6 133850043 133850043 A G EYA4 3'UTR 0.38 TCGA-VP-A87D-01 6 145157535 145157535 C T UTRN Missense_Mutation p.T3308M 0.08 deleterious(0.04) benign(0.068) TCGA-VP-A87D-01 6 155500568 155500568 G A TIAM2 Silent p.K895K 0.30 TCGA-VP-A87D-01 6 17779890 17779890 C T KIF13A Missense_Mutation p.R1291K 0.30 tolerated(0.5) probably_damaging(0.989) TCGA-VP-A87D-01 6 26022184 26022184 G T HIST1H4A Missense_Mutation p.R93L 0.06 deleterious(0.04) possibly_damaging(0.722) TCGA-VP-A87D-01 6 27420425 27420425 G T ZNF184 Missense_Mutation p.P305T 0.08 deleterious(0) probably_damaging(1) TCGA-VP-A87D-01 6 27861251 27861251 C A HIST1H2BO Missense_Mutation p.P4Q 0.06 tolerated_low_confidence(0.05) unknown(0) TCGA-VP-A87D-01 7 100679543 100679543 G A MUC17 Missense_Mutation p.A1616T 0.37 unknown(0) TCGA-VP-A87D-01 7 73456962 73456962 C A ELN Missense_Mutation p.A84E 0.16 unknown(0) TCGA-VP-A87D-01 7 92761817 92761817 C T SAMD9L Silent p.A1156A 0.35 TCGA-VP-A87D-01 9 125551593 125551593 G A OR5C1 Missense_Mutation p.V128M 0.07 tolerated(0.1) benign(0.013) TCGA-VP-A87D-01 9 96418836 96418836 C T PHF2 Missense_Mutation p.A369V 0.57 tolerated(0.4) unknown(0) TCGA-VP-A87D-01 X 37028160 37028160 C T FAM47C Silent p.R559R 0.73 TCGA-VP-A87D-01 Y 4925456 4925456 C T PCDH11Y Missense_Mutation p.P198S 0.73 tolerated(0.05) probably_damaging(0.944) TCGA-VP-A87E-01 10 61083780 61083780 G T FAM13C Missense_Mutation p.F137L 0.03 tolerated_low_confidence(0.25) benign(0.011) TCGA-VP-A87E-01 10 70645938 70645938 A G STOX1 Missense_Mutation p.R796G 0.05 tolerated(0.48) benign(0.001) TCGA-VP-A87E-01 11 102733793 102733793 C G MMP12 RNA 0.07 TCGA-VP-A87E-01 13 42875269 42875269 C A AKAP11 Missense_Mutation p.S796Y 0.07 deleterious(0.02) probably_damaging(0.921) TCGA-VP-A87E-01 14 75514215 75514215 G A MLH3 Missense_Mutation p.P715L 0.08 tolerated(0.38) benign(0.001) TCGA-VP-A87E-01 16 72845836 72845836 G T ZFHX3 Missense_Mutation p.P1211T 0.05 benign(0.015) TCGA-VP-A87E-01 17 11881383 11881383 T C ZNF18 Missense_Mutation p.H514R 0.07 deleterious(0) probably_damaging(0.999) TCGA-VP-A87E-01 17 33977804 33977804 G A AP2B1 Missense_Mutation p.G598R 0.05 tolerated(0.2) benign(0.03) TCGA-VP-A87E-01 17 33977805 33977805 G A AP2B1 Missense_Mutation p.G598E 0.04 tolerated(0.32) benign(0.001) TCGA-VP-A87E-01 19 15757912 15757912 C A CYP4F3 Missense_Mutation p.L132M 0.04 deleterious(0.01) possibly_damaging(0.901) TCGA-VP-A87E-01 19 5210793 5210793 G C PTPRS Missense_Mutation p.T1753R 0.08 deleterious(0.02) possibly_damaging(0.808) TCGA-VP-A87E-01 1 158300734 158300734 G A CD1B Silent p.S60S 0.03 TCGA-VP-A87E-01 1 16935241 16935241 G T NBPF1 5'UTR 0.12 TCGA-VP-A87E-01 1 210577932 210577932 C T HHAT Missense_Mutation p.S199F 0.14 tolerated(0.17) benign(0.005) TCGA-VP-A87E-01 21 37537017 37537017 C A DOPEY2 5'UTR 0.06 TCGA-VP-A87E-01 22 21947210 21947210 G C UBE2L3 Missense_Mutation p.A88P 0.06 deleterious(0.03) benign(0.021) TCGA-VP-A87E-01 2 152359340 152359340 C T NEB Silent p.E7965E 0.08 TCGA-VP-A87E-01 5 159665722 159665722 C A FABP6 3'UTR 0.07 TCGA-VP-A87E-01 6 146720225 146720225 C T GRM1 Missense_Mutation p.R684C 0.11 deleterious(0) probably_damaging(1) TCGA-VP-A87E-01 6 63990019 63990019 G A LGSN Silent p.T479T 0.05 TCGA-VP-A87E-01 7 23286530 23286530 A C GPNMB Silent p.P18P 0.04 TCGA-VP-A87E-01 7 94898588 94898588 T C PPP1R9A Missense_Mutation p.S965P 0.15 tolerated(0.08) possibly_damaging(0.876) TCGA-VP-A87E-01 8 133053842 133053842 G A OC90 Nonsense_Mutation p.R92* 0.06 TCGA-VP-A87E-01 8 99030231 99030231 T G MATN2 Missense_Mutation p.V569G 0.04 tolerated(0.17) benign(0.066) TCGA-VP-A87E-01 X 123179076 123179076 T C STAG2 Silent p.F175F 0.10 TCGA-VP-A87E-01 X 149639452 149639452 C G MAMLD1 Missense_Mutation p.P511R 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-VP-A87E-01 X 2838677 2838677 A C ARSD Missense_Mutation p.I135S 0.14 deleterious(0.02) possibly_damaging(0.616) TCGA-VP-A87E-01 X 53436013 53436013 G C SMC1A Missense_Mutation p.R509G 0.14 deleterious(0) probably_damaging(0.932) TCGA-VP-A87E-01 X 7023871 7023871 G A HDHD1 Missense_Mutation p.R47W 0.23 deleterious(0) benign(0.037) TCGA-VP-A87H-01 10 105218101 105218101 G A CALHM1 Silent p.S136S 0.24 TCGA-VP-A87H-01 10 106802875 106802875 C A SORCS3 Missense_Mutation p.N339K 0.13 deleterious(0.01) benign(0.279) TCGA-VP-A87H-01 10 106802876 106802876 A G SORCS3 Missense_Mutation p.R340G 0.15 deleterious(0) probably_damaging(0.964) TCGA-VP-A87H-01 10 106802882 106802882 T A SORCS3 Missense_Mutation p.Y342N 0.15 deleterious(0) probably_damaging(0.996) TCGA-VP-A87H-01 11 1023628 1023628 G A MUC6 Missense_Mutation p.T1136M 0.13 unknown(0) TCGA-VP-A87H-01 11 108056136 108056136 A G NPAT Missense_Mutation p.L271S 0.27 deleterious(0) probably_damaging(0.984) TCGA-VP-A87H-01 12 11175140 11175140 T C TAS2R19 Missense_Mutation p.I11V 0.13 tolerated(0.16) benign(0.26) TCGA-VP-A87H-01 12 121416600 121416600 C T HNF1A Missense_Mutation p.T10M 0.17 deleterious(0.05) unknown(0) TCGA-VP-A87H-01 12 132445686 132445686 C T EP400 Silent p.S174S 0.21 TCGA-VP-A87H-01 15 34102840 34102840 G A RYR3 Missense_Mutation p.R3396Q 0.38 possibly_damaging(0.684) TCGA-VP-A87H-01 15 72300187 72300187 T C MYO9A Missense_Mutation p.I454V 0.33 tolerated(0.67) benign(0.001) TCGA-VP-A87H-01 16 19047013 19047013 C T TMC7 Silent p.F291F 0.57 TCGA-VP-A87H-01 16 29891286 29891286 C T SEZ6L2 Missense_Mutation p.C491Y 0.14 deleterious(0) probably_damaging(0.973) TCGA-VP-A87H-01 17 47696426 47696426 A C SPOP Missense_Mutation p.F133V 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-VP-A87H-01 17 7127384 7127385 - T ACADVL Frame_Shift_Ins p.M501Yfs*84 0.21 TCGA-VP-A87H-01 17 74266281 74266281 A G UBALD2 Missense_Mutation p.T64A 0.16 tolerated(0.15) benign(0.332) TCGA-VP-A87H-01 19 34685513 34685514 - T LSM14A Frame_Shift_Ins p.C85Lfs*76 0.10 TCGA-VP-A87H-01 19 49935776 49935776 C T SLC17A7 Missense_Mutation p.G384S 0.27 deleterious(0) probably_damaging(0.971) TCGA-VP-A87H-01 1 15894677 15894677 A T DNAJC16 3'UTR 0.21 TCGA-VP-A87H-01 1 39798764 39798764 T C MACF1 Intron 0.28 TCGA-VP-A87H-01 21 37605187 37605187 G C DOPEY2 Silent p.V812V 0.12 TCGA-VP-A87H-01 2 165551962 165551962 G A COBLL1 Missense_Mutation p.S685L 0.28 tolerated(0.49) benign(0.001) TCGA-VP-A87H-01 2 219677083 219677083 G A CYP27A1 Silent p.E195E 0.18 TCGA-VP-A87H-01 3 124997998 124997998 G T ZNF148 Missense_Mutation p.H185N 0.40 deleterious(0) probably_damaging(0.997) TCGA-VP-A87H-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.18 deleterious(0.04) probably_damaging(0.96) TCGA-VP-A87H-01 3 41266101 41266101 C A CTNNB1 Missense_Mutation p.S33Y 0.19 deleterious(0) possibly_damaging(0.64) TCGA-VP-A87H-01 4 169196591 169196591 G A DDX60 Missense_Mutation p.R737W 0.26 deleterious(0) probably_damaging(1) TCGA-VP-A87H-01 4 187525553 187525554 TC - FAT1 Frame_Shift_Del p.D3509Sfs*11 0.17 TCGA-VP-A87H-01 4 20525792 20525792 G A SLIT2 Missense_Mutation p.R477H 0.06 deleterious(0) probably_damaging(0.997) TCGA-VP-A87H-01 5 180582423 180582423 A - OR2V2 Frame_Shift_Del p.M161Wfs*3 0.20 TCGA-VP-A87H-01 6 49703225 49703225 C A CRISP3 Missense_Mutation p.R113L 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-VP-A87H-01 7 97488604 97488604 G A ASNS Silent p.S198S 0.27 TCGA-VP-A87H-01 8 12586450 12586450 C A LONRF1 Missense_Mutation p.G657V 0.33 deleterious(0) probably_damaging(1) TCGA-VP-A87H-01 8 87487083 87487083 T C RMDN1 Missense_Mutation p.K287R 0.33 tolerated(0.44) benign(0.003) TCGA-VP-A87H-01 9 35906559 35906559 A C HRCT1 Missense_Mutation p.H92P 0.50 tolerated_low_confidence(0.3) unknown(0) TCGA-VP-A87H-01 9 94877660 94877660 C T SPTLC1 5'Flank 0.12 TCGA-VP-A87J-01 10 127782593 127782593 G A ADAM12 Missense_Mutation p.A372V 0.38 deleterious(0.02) benign(0.311) TCGA-VP-A87J-01 11 100998642 100998642 A G PGR Missense_Mutation p.I387T 0.45 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-VP-A87J-01 12 12871204 12871204 T G CDKN1B Nonsense_Mutation p.L144* 0.19 TCGA-VP-A87J-01 12 54902249 54902249 G A NCKAP1L Missense_Mutation p.R147Q 0.40 deleterious(0.05) probably_damaging(0.982) TCGA-VP-A87J-01 12 57872994 57872994 G A ARHGAP9 Missense_Mutation p.R66C 0.39 deleterious(0.01) benign(0.024) TCGA-VP-A87J-01 13 52603570 52603570 T C UTP14C Silent p.S210S 0.09 TCGA-VP-A87J-01 13 52603571 52603571 C T UTP14C Missense_Mutation p.L211F 0.09 tolerated(0.08) benign(0.35) TCGA-VP-A87J-01 14 92336560 92336560 C G FBLN5 3'UTR 0.39 TCGA-VP-A87J-01 15 70960750 70960750 T C UACA Missense_Mutation p.D758G 0.09 tolerated(0.23) benign(0) TCGA-VP-A87J-01 16 61760857 61760857 C G CDH8 Intron 0.45 TCGA-VP-A87J-01 16 84793526 84793526 T C USP10 Missense_Mutation p.M475T 0.60 deleterious(0) probably_damaging(0.994) TCGA-VP-A87J-01 17 15406355 15406355 C A TVP23C Silent p.A218A 0.36 TCGA-VP-A87J-01 17 29576014 29576014 A G NF1 Silent p.S1329S 0.06 TCGA-VP-A87J-01 17 47121347 47121347 A G IGF2BP1 Missense_Mutation p.M407V 0.48 tolerated(0.19) benign(0.001) TCGA-VP-A87J-01 17 7836490 7836490 G T CNTROB Silent p.S31S 0.35 TCGA-VP-A87J-01 18 23713978 23713978 C A PSMA8 Missense_Mutation p.H17N 0.06 deleterious(0.04) probably_damaging(0.997) TCGA-VP-A87J-01 18 347050 347050 T C COLEC12 Missense_Mutation p.N191S 0.10 tolerated(0.76) benign(0.026) TCGA-VP-A87J-01 19 10197574 10197574 C A C19orf66 Intron 0.26 TCGA-VP-A87J-01 19 43372287 43372287 C A PSG1 Missense_Mutation p.K403N 0.35 tolerated(0.36) benign(0.124) TCGA-VP-A87J-01 19 44418401 44418401 C G ZNF45 Missense_Mutation p.G396A 0.33 deleterious(0.01) probably_damaging(1) TCGA-VP-A87J-01 19 55451127 55451127 C T NLRP7 Missense_Mutation p.A354T 0.33 tolerated(0.17) benign(0.312) TCGA-VP-A87J-01 1 104203055 104203055 C T AMY1A Nonsense_Mutation p.R318* 0.18 TCGA-VP-A87J-01 1 158819052 158819052 A T MNDA 3'UTR 0.10 TCGA-VP-A87J-01 1 197898209 197898209 C T LHX9 Silent p.D338D 0.38 TCGA-VP-A87J-01 1 205238117 205238117 G A TMCC2 Missense_Mutation p.G263S 0.10 tolerated(0.97) benign(0.006) TCGA-VP-A87J-01 1 207072689 207072689 G A IL24 Silent p.A24A 0.42 TCGA-VP-A87J-01 1 27100117 27100117 C T ARID1A Missense_Mutation p.P1305S 0.14 unknown(0) TCGA-VP-A87J-01 1 70482159 70482159 T C LRRC7 Missense_Mutation p.L383S 0.07 deleterious(0) probably_damaging(0.999) TCGA-VP-A87J-01 20 2637136 2637136 G A NOP56 Missense_Mutation p.R367H 0.07 deleterious(0) probably_damaging(0.994) TCGA-VP-A87J-01 21 35743211 35743211 G A KCNE2 3'UTR 0.33 TCGA-VP-A87J-01 22 39439011 39439011 T G APOBEC3F Silent p.R29R 0.08 TCGA-VP-A87J-01 2 14774315 14774315 A G FAM84A Missense_Mutation p.H71R 0.21 tolerated(0.21) benign(0.346) TCGA-VP-A87J-01 2 179476287 179476287 T G TTN Missense_Mutation p.E16890A 0.40 TCGA-VP-A87J-01 4 99823091 99823091 T G EIF4E Missense_Mutation p.K21Q 0.37 tolerated(0.32) benign(0.085) TCGA-VP-A87J-01 5 53751722 53751722 T C HSPB3 Missense_Mutation p.Y35H 0.29 deleterious(0) probably_damaging(0.982) TCGA-VP-A87J-01 7 141364006 141364006 C T KIAA1147 Missense_Mutation p.D380N 0.20 tolerated(0.18) possibly_damaging(0.86) TCGA-VP-A87J-01 7 92020477 92020477 T C ANKIB1 Intron 0.15 TCGA-VP-A87J-01 8 135614923 135614923 G A ZFAT Nonsense_Mutation p.R347* 0.42 TCGA-VP-A87J-01 9 114412196 114412196 A G DNAJC25 Missense_Mutation p.N318S 0.52 deleterious(0.01) possibly_damaging(0.532) TCGA-VP-A87J-01 9 33943522 33943522 C A UBAP2 Silent p.G537G 0.34 TCGA-VP-A87J-01 X 1761932 1761932 C T ASMT 3'UTR 0.34 TCGA-VP-A87J-01 X 70349255 70349255 G C MED12 Missense_Mutation p.V1223L 0.86 possibly_damaging(0.684) TCGA-VP-A87K-01 10 51754188 51754188 A G AGAP6 Missense_Mutation p.H132R 0.05 deleterious_low_confidence(0.03) benign(0.012) TCGA-VP-A87K-01 10 72291081 72291081 G A PALD1 Silent p.V168V 0.31 TCGA-VP-A87K-01 11 64678137 64678137 C T ATG2A Missense_Mutation p.R553Q 0.33 tolerated(0.54) benign(0.004) TCGA-VP-A87K-01 11 7960191 7960191 G A OR10A3 Nonsense_Mutation p.R293* 0.04 TCGA-VP-A87K-01 12 109948242 109948242 C G UBE3B Missense_Mutation p.P612R 0.39 deleterious(0) benign(0.318) TCGA-VP-A87K-01 14 47600972 47600972 C T MDGA2 Silent p.R290R 0.45 TCGA-VP-A87K-01 15 48779510 48779510 G A FBN1 Silent p.I1154I 0.09 TCGA-VP-A87K-01 15 51696652 51696652 G C GLDN Missense_Mutation p.D453H 0.26 deleterious(0) probably_damaging(0.958) TCGA-VP-A87K-01 16 14355248 14355248 A G MKL2 Missense_Mutation p.M1033V 0.29 tolerated(0.55) benign(0.003) TCGA-VP-A87K-01 16 67699024 67699024 C A ENKD1 Nonsense_Mutation p.E110* 0.07 TCGA-VP-A87K-01 17 58233957 58233957 G A CA4 Missense_Mutation p.R50H 0.51 tolerated(0.49) benign(0.016) TCGA-VP-A87K-01 18 2945776 2945776 G A LPIN2 Intron 0.07 TCGA-VP-A87K-01 19 49399726 49399726 G A TULP2 Missense_Mutation p.R58C 0.09 deleterious(0) probably_damaging(0.964) TCGA-VP-A87K-01 1 247921334 247921334 C T OR1C1 Silent p.A125A 0.45 TCGA-VP-A87K-01 1 63991268 63991268 G A EFCAB7 Missense_Mutation p.A9T 0.05 tolerated(0.41) benign(0.004) TCGA-VP-A87K-01 1 9775907 9775907 G A PIK3CD Missense_Mutation p.G124D 0.11 deleterious(0.04) probably_damaging(1) TCGA-VP-A87K-01 20 31825867 31825867 G A BPIFA1 Missense_Mutation p.S56N 0.42 tolerated(0.08) benign(0.177) TCGA-VP-A87K-01 20 5965438 5965438 C A MCM8 Missense_Mutation p.A582E 0.06 deleterious(0) possibly_damaging(0.898) TCGA-VP-A87K-01 20 62421621 62421621 C T ZBTB46 Missense_Mutation p.G164R 0.33 deleterious(0.01) probably_damaging(0.988) TCGA-VP-A87K-01 21 47847672 47847672 C T PCNT Missense_Mutation p.S2486F 0.22 benign(0) TCGA-VP-A87K-01 2 168067309 168067309 T A XIRP2 Silent p.G209G 0.48 TCGA-VP-A87K-01 2 191897829 191897829 C A STAT4 Missense_Mutation p.L633F 0.49 deleterious(0) probably_damaging(1) TCGA-VP-A87K-01 2 220357387 220357387 G A SPEG Missense_Mutation p.R3228H 0.09 probably_damaging(0.996) TCGA-VP-A87K-01 2 98355918 98355918 G A ZAP70 Missense_Mutation p.G606E 0.49 tolerated_low_confidence(0.37) benign(0.001) TCGA-VP-A87K-01 3 36872688 36872688 C T TRANK1 Missense_Mutation p.E2752K 0.39 deleterious(0.02) possibly_damaging(0.667) TCGA-VP-A87K-01 4 120982089 120982089 G A MAD2L1 Missense_Mutation p.R129C 0.50 deleterious(0.02) benign(0.077) TCGA-VP-A87K-01 4 148453712 148453712 A G EDNRA Silent p.V201V 0.36 TCGA-VP-A87K-01 4 25785888 25785888 G C SEL1L3 Missense_Mutation p.R748G 0.40 deleterious(0.03) benign(0.335) TCGA-VP-A87K-01 5 140221009 140221009 G A PCDHA8 Missense_Mutation p.V35I 0.06 tolerated_low_confidence(0.14) benign(0.147) TCGA-VP-A87K-01 6 108214759 108214759 T G SEC63 Missense_Mutation p.K534T 0.45 tolerated(0.39) probably_damaging(0.91) TCGA-VP-A87K-01 6 49754849 49754849 G A PGK2 Nonsense_Mutation p.R18* 0.14 TCGA-VP-A87K-01 7 120385852 120385852 G A KCND2 Missense_Mutation p.E496K 0.21 tolerated_low_confidence(0.08) benign(0.322) TCGA-VP-A87K-01 7 48314144 48314144 T C ABCA13 Silent p.A1627A 0.44 TCGA-VP-A87K-01 8 113599319 113599319 A C CSMD3 Missense_Mutation p.H1287Q 0.50 tolerated(1) benign(0.223) TCGA-VP-A87K-01 9 6007388 6007388 C A KIAA2026 Nonsense_Mutation p.G134* 0.40 TCGA-VP-A87K-01 9 90585482 90585482 C G CDK20 Splice_Site p.X188_splice 0.24 TCGA-VP-A87K-01 X 105881006 105881006 G A CXorf57 Silent p.P475P 0.08 TCGA-VP-AA1N-01 10 37451578 37451578 G C ANKRD30A Missense_Mutation p.E578D 0.05 tolerated(0.5) benign(0.032) TCGA-VP-AA1N-01 10 5765643 5765643 G T FAM208B Silent p.P50P 0.21 TCGA-VP-AA1N-01 10 72358340 72358340 C T PRF1 Silent p.R379R 0.20 TCGA-VP-AA1N-01 11 1078359 1078359 G A MUC2 Missense_Mutation p.A216T 0.09 benign(0.012) TCGA-VP-AA1N-01 11 121031011 121031011 C T TECTA Silent p.C1619C 0.53 TCGA-VP-AA1N-01 11 25004673 25004673 A T LUZP2 Missense_Mutation p.E200V 0.30 deleterious(0) possibly_damaging(0.649) TCGA-VP-AA1N-01 11 62557409 62557411 GTC - TMEM179B In_Frame_Del p.V185del 0.45 TCGA-VP-AA1N-01 12 122656935 122656935 C T IL31 3'UTR 0.09 TCGA-VP-AA1N-01 12 48741884 48741884 G C ZNF641 Missense_Mutation p.S11C 0.23 tolerated_low_confidence(0.1) benign(0.001) TCGA-VP-AA1N-01 12 54106519 54106519 G A CALCOCO1 Intron 0.54 TCGA-VP-AA1N-01 12 7177521 7177521 G A C1S Missense_Mutation p.V545I 0.32 tolerated(0.38) benign(0.021) TCGA-VP-AA1N-01 14 38061229 38061237 ACATGTTGC - FOXA1 In_Frame_Del p.G251_F254delinsV 0.38 TCGA-VP-AA1N-01 14 94849095 94849095 C A SERPINA1 Missense_Mutation p.K160N 0.07 tolerated(0.93) benign(0.002) TCGA-VP-AA1N-01 15 34295292 34295292 T C AVEN Missense_Mutation p.N129S 0.31 tolerated(0.77) benign(0.05) TCGA-VP-AA1N-01 15 40750818 40750818 G A BAHD1 Missense_Mutation p.R52H 0.29 deleterious(0) probably_damaging(0.968) TCGA-VP-AA1N-01 15 90432278 90432278 T C C15orf38-AP3S2 Intron 0.32 TCGA-VP-AA1N-01 16 3021258 3021258 C T PAQR4 Silent p.C89C 0.11 TCGA-VP-AA1N-01 17 10212891 10212891 C T MYH13 Missense_Mutation p.R1638H 0.24 deleterious(0.01) possibly_damaging(0.817) TCGA-VP-AA1N-01 17 40557272 40557272 C T PTRF Silent p.S202S 0.07 TCGA-VP-AA1N-01 17 5984071 5984071 C - WSCD1 Frame_Shift_Del p.L32Cfs*61 0.28 TCGA-VP-AA1N-01 17 79847127 79847127 C T ALYREF Missense_Mutation p.D157N 0.44 deleterious(0.01) possibly_damaging(0.57) TCGA-VP-AA1N-01 19 8665932 8665932 G A ADAMTS10 Silent p.G230G 0.42 TCGA-VP-AA1N-01 1 12091320 12091320 C G MIIP Intron 0.46 TCGA-VP-AA1N-01 1 228494135 228494135 A C OBSCN Missense_Mutation p.T4865P 0.28 possibly_damaging(0.793) TCGA-VP-AA1N-01 1 55075645 55075645 A T ACOT11 Intron 0.32 TCGA-VP-AA1N-01 20 13251264 13251264 G A ISM1 Silent p.P84P 0.20 TCGA-VP-AA1N-01 20 5283201 5283201 C T PROKR2 Missense_Mutation p.V214M 0.33 deleterious(0.01) probably_damaging(0.961) TCGA-VP-AA1N-01 22 18027870 18027870 C A CECR2 Missense_Mutation p.P944T 0.38 tolerated_low_confidence(0.15) benign(0.108) TCGA-VP-AA1N-01 22 20800756 20800756 C T KLHL22 Missense_Mutation p.A505T 0.44 tolerated(0.55) benign(0.016) TCGA-VP-AA1N-01 22 21998284 21998284 C G SDF2L1 Missense_Mutation p.F162L 0.12 tolerated(0.77) probably_damaging(0.996) TCGA-VP-AA1N-01 2 215617196 215617196 G A BARD1 Missense_Mutation p.S551L 0.39 deleterious(0.04) benign(0.013) TCGA-VP-AA1N-01 2 232263298 232263298 G A B3GNT7 Missense_Mutation p.G290S 0.17 tolerated(0.71) benign(0.004) TCGA-VP-AA1N-01 2 37255199 37255199 A G HEATR5B Silent p.F1240F 0.31 TCGA-VP-AA1N-01 5 52096235 52096235 C T PELO Missense_Mutation p.L3F 0.18 deleterious(0) probably_damaging(0.99) TCGA-VP-AA1N-01 6 53660191 53660191 A G LRRC1 Missense_Mutation p.N46S 0.46 deleterious(0) possibly_damaging(0.458) TCGA-VP-AA1N-01 7 100490251 100490251 G A ACHE Silent p.P419P 0.33 TCGA-VP-AA1N-01 7 151846165 151846165 T G KMT2C Missense_Mutation p.N4283H 0.26 probably_damaging(0.999) TCGA-VP-AA1N-01 7 76134727 76134727 C T DTX2 Missense_Mutation p.L560F 0.50 deleterious(0) probably_damaging(1) TCGA-VP-AA1N-01 7 99754500 99754500 C G C7orf43 Missense_Mutation p.G321R 0.49 deleterious(0.03) benign(0.441) TCGA-VP-AA1N-01 8 113697664 113697664 G T CSMD3 Nonsense_Mutation p.S818* 0.27 TCGA-VP-AA1N-01 9 135277515 135277515 C T TTF1 Missense_Mutation p.E232K 0.34 deleterious_low_confidence(0.03) benign(0.089) TCGA-VP-AA1N-01 9 95178945 95178945 G - OMD Frame_Shift_Del p.P299Qfs*14 0.16 TCGA-WW-A8ZI-01 10 73437370 73437370 G A CDH23 Missense_Mutation p.V150M 0.56 tolerated(0.27) benign(0.03) TCGA-WW-A8ZI-01 11 61183967 61183967 C T CPSF7 Missense_Mutation p.R235Q 0.48 tolerated(0.15) probably_damaging(0.964) TCGA-WW-A8ZI-01 11 66620019 66620019 G A PC Silent p.D572D 0.08 TCGA-WW-A8ZI-01 11 71718448 71718448 G A NUMA1 Silent p.S1750S 0.09 TCGA-WW-A8ZI-01 11 88068157 88068157 T A CTSC Missense_Mutation p.N89I 0.48 deleterious(0) probably_damaging(0.999) TCGA-WW-A8ZI-01 12 13716213 13716213 C T GRIN2B Missense_Mutation p.R1320H 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-WW-A8ZI-01 12 44190803 44190803 T A TWF1 Missense_Mutation p.Q293H 0.45 tolerated(0.11) benign(0.005) TCGA-WW-A8ZI-01 12 78415542 78415542 T A NAV3 Missense_Mutation p.N641K 0.04 tolerated(0.14) possibly_damaging(0.894) TCGA-WW-A8ZI-01 14 23511486 23511486 T A PSMB11 Missense_Mutation p.S18T 0.42 tolerated(0.22) benign(0.003) TCGA-WW-A8ZI-01 14 71555961 71555961 C T PCNX Missense_Mutation p.R1831C 0.47 deleterious(0) probably_damaging(1) TCGA-WW-A8ZI-01 17 17075149 17075149 C G MPRIP Missense_Mutation p.L761V 0.42 deleterious(0.04) probably_damaging(0.994) TCGA-WW-A8ZI-01 17 38936652 38936652 C T KRT27 Missense_Mutation p.R195Q 0.26 deleterious(0.02) probably_damaging(0.942) TCGA-WW-A8ZI-01 17 46054119 46054119 G A CDK5RAP3 Silent p.G280G 0.80 TCGA-WW-A8ZI-01 18 10691245 10691245 C T PIEZO2 Missense_Mutation p.V2330I 0.65 tolerated(0.22) benign(0.034) TCGA-WW-A8ZI-01 18 6311576 6311576 G A L3MBTL4 Missense_Mutation p.R17C 0.09 deleterious(0.03) benign(0.116) TCGA-WW-A8ZI-01 19 2213832 2213832 C T DOT1L Intron 0.35 TCGA-WW-A8ZI-01 1 171761209 171761209 C T METTL13 Silent p.L509L 0.39 TCGA-WW-A8ZI-01 1 19166493 19166493 C T TAS1R2 Missense_Mutation p.R707H 0.18 tolerated(0.45) benign(0.11) TCGA-WW-A8ZI-01 1 204501935 204501935 G C MDM4 Intron 0.40 TCGA-WW-A8ZI-01 1 4772618 4772618 A G AJAP1 Missense_Mutation p.T230A 0.59 tolerated(0.12) benign(0.002) TCGA-WW-A8ZI-01 20 17462324 17462324 C T PCSK2 Missense_Mutation p.A509V 0.34 tolerated(0.32) benign(0.125) TCGA-WW-A8ZI-01 2 113593795 113593795 T C IL1B Silent p.V4V 0.43 TCGA-WW-A8ZI-01 2 138413129 138413129 G A THSD7B Missense_Mutation p.G1338D 0.38 deleterious(0) unknown(0) TCGA-WW-A8ZI-01 2 74683262 74683262 C T INO80B Missense_Mutation p.R135W 0.44 deleterious(0.02) benign(0.348) TCGA-WW-A8ZI-01 3 194146084 194146084 A G ATP13A3 Silent p.P1100P 0.31 TCGA-WW-A8ZI-01 3 38763822 38763822 C A SCN10A Missense_Mutation p.C1145F 0.42 deleterious(0) probably_damaging(1) TCGA-WW-A8ZI-01 4 110864507 110864507 T G EGF Missense_Mutation p.V142G 0.45 tolerated(0.18) benign(0.266) TCGA-WW-A8ZI-01 4 94316827 94316827 C T GRID2 Missense_Mutation p.R439C 0.45 deleterious(0) possibly_damaging(0.872) TCGA-WW-A8ZI-01 5 176728925 176728925 C G RAB24 Splice_Site p.X183_splice 0.42 TCGA-WW-A8ZI-01 5 21802288 21802288 C T CDH12 Missense_Mutation p.S415N 0.55 tolerated(1) benign(0.012) TCGA-WW-A8ZI-01 5 63256592 63256592 C T HTR1A Missense_Mutation p.A319T 0.07 tolerated(0.45) benign(0.001) TCGA-WW-A8ZI-01 5 840577 840577 G - ZDHHC11 Intron 0.10 TCGA-WW-A8ZI-01 6 150569907 150569907 G A PPP1R14C Missense_Mutation p.R150Q 0.52 deleterious(0.02) probably_damaging(0.979) TCGA-WW-A8ZI-01 6 159653389 159653389 G A FNDC1 Silent p.S615S 0.34 TCGA-WW-A8ZI-01 6 30164320 30164320 C T TRIM26 Silent p.A246A 0.45 TCGA-WW-A8ZI-01 7 142479980 142479980 C A PRSS3P2 RNA 0.29 TCGA-WW-A8ZI-01 9 731264 731264 A C KANK1 Silent p.G1001G 0.31 TCGA-WW-A8ZI-01 X 12939510 12939510 G A TLR8 Missense_Mutation p.R784Q 0.14 tolerated(0.11) benign(0.154) TCGA-X4-A8KQ-01 10 95720561 95720561 G A PIPSL RNA 0.30 TCGA-X4-A8KQ-01 11 124765421 124765421 A G ROBO4 Missense_Mutation p.V323A 0.22 deleterious(0) probably_damaging(0.932) TCGA-X4-A8KQ-01 11 55653269 55653269 G A TRIM51 Missense_Mutation p.R122Q 0.24 tolerated(0.45) possibly_damaging(0.477) TCGA-X4-A8KQ-01 11 57886182 57886182 G C OR9I1 Missense_Mutation p.I245M 0.08 tolerated(0.14) benign(0.392) TCGA-X4-A8KQ-01 11 57995989 57995989 G A OR10Q1 Missense_Mutation p.A120V 0.26 deleterious(0.04) possibly_damaging(0.848) TCGA-X4-A8KQ-01 12 124957641 124957642 - A NCOR2 Frame_Shift_Ins p.P150Sfs*8 0.25 TCGA-X4-A8KQ-01 12 49444975 49444976 AT - KMT2D Frame_Shift_Del p.E830Dfs*8 0.18 TCGA-X4-A8KQ-01 12 49888746 49888746 G T SPATS2 Missense_Mutation p.D163Y 0.15 deleterious(0) probably_damaging(0.984) TCGA-X4-A8KQ-01 12 51754523 51754523 G A GALNT6 Silent p.N383N 0.34 TCGA-X4-A8KQ-01 12 7947285 7947285 C A NANOG Missense_Mutation p.A171E 0.43 tolerated(0.09) benign(0.421) TCGA-X4-A8KQ-01 13 38164612 38164612 G A POSTN Missense_Mutation p.T113M 0.21 tolerated(0.06) probably_damaging(1) TCGA-X4-A8KQ-01 14 22409639 22409639 G A TRAV9-2 Silent p.T43T 0.12 TCGA-X4-A8KQ-01 14 65009231 65009231 C T HSPA2 Missense_Mutation p.T555M 0.25 deleterious_low_confidence(0) benign(0.088) TCGA-X4-A8KQ-01 16 10274038 10274038 G A GRIN2A Silent p.T77T 0.29 TCGA-X4-A8KQ-01 17 34192290 34192290 C T C17orf66 Nonsense_Mutation p.W83* 0.19 TCGA-X4-A8KQ-01 17 56439945 56439945 G T RNF43 Nonsense_Mutation p.S216* 0.17 TCGA-X4-A8KQ-01 17 80041237 80041237 C T FASN Silent p.E1802E 0.38 TCGA-X4-A8KQ-01 19 16003207 16003207 C T CYP4F2 Missense_Mutation p.R146H 0.21 tolerated(0.25) benign(0.104) TCGA-X4-A8KQ-01 19 17283599 17283599 G A MYO9B Missense_Mutation p.R656Q 0.32 deleterious(0) probably_damaging(1) TCGA-X4-A8KQ-01 1 113212672 113212672 G A CAPZA1 Missense_Mutation p.R260Q 0.26 deleterious(0.02) benign(0.418) TCGA-X4-A8KQ-01 1 113638882 113638882 C T LRIG2 Missense_Mutation p.S329F 0.17 tolerated(0.24) benign(0.053) TCGA-X4-A8KQ-01 1 12198401 12198401 C T TNFRSF8 Missense_Mutation p.P484L 0.20 tolerated(0.19) benign(0.036) TCGA-X4-A8KQ-01 1 150529231 150529231 T C ADAMTSL4 Missense_Mutation p.S571P 0.17 tolerated(0.05) possibly_damaging(0.811) TCGA-X4-A8KQ-01 1 153614944 153614944 C G CHTOP Intron 0.41 TCGA-X4-A8KQ-01 1 17668843 17668843 C T PADI4 Missense_Mutation p.A294V 0.20 deleterious(0) probably_damaging(0.943) TCGA-X4-A8KQ-01 1 185951499 185951499 G A HMCN1 Missense_Mutation p.R923Q 0.32 benign(0.302) TCGA-X4-A8KQ-01 1 197061108 197061108 G A ASPM Nonsense_Mutation p.Q3125* 0.27 TCGA-X4-A8KQ-01 1 203677049 203677049 C T ATP2B4 Silent p.N458N 0.35 TCGA-X4-A8KQ-01 1 33998700 33998700 C T CSMD2 Missense_Mutation p.R3230H 0.26 deleterious(0) probably_damaging(1) TCGA-X4-A8KQ-01 1 7804931 7804931 G A CAMTA1 Missense_Mutation p.A1407T 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-X4-A8KQ-01 22 50900074 50900074 G A SBF1 Missense_Mutation p.P906L 0.14 deleterious(0) possibly_damaging(0.529) TCGA-X4-A8KQ-01 2 152529086 152529086 A G NEB Missense_Mutation p.S1366P 0.30 probably_damaging(1) TCGA-X4-A8KQ-01 2 15770187 15770187 A G DDX1 Missense_Mutation p.D682G 0.23 tolerated(0.05) benign(0.14) TCGA-X4-A8KQ-01 2 182395293 182395293 T C ITGA4 Missense_Mutation p.C861R 0.31 deleterious(0) probably_damaging(1) TCGA-X4-A8KQ-01 2 226447623 226447623 C A NYAP2 Missense_Mutation p.A497E 0.14 tolerated(0.24) benign(0.127) TCGA-X4-A8KQ-01 3 14518782 14518782 C T SLC6A6 Missense_Mutation p.R427C 0.37 deleterious(0.01) benign(0.032) TCGA-X4-A8KQ-01 3 47450483 47450483 C T PTPN23 Silent p.H516H 0.10 TCGA-X4-A8KQ-01 5 125936738 125936738 G A PHAX Silent p.P28P 0.40 TCGA-X4-A8KQ-01 5 140516147 140516147 C T PCDHB5 Silent p.N377N 0.25 TCGA-X4-A8KQ-01 5 3599422 3599422 C T IRX1 Silent p.Y120Y 0.10 TCGA-X4-A8KQ-01 5 9122875 9122875 G A SEMA5A Silent p.S558S 0.08 TCGA-X4-A8KQ-01 6 131908954 131908954 A T MED23 Silent p.A1324A 0.31 TCGA-X4-A8KQ-01 6 70034878 70034878 C T BAI3 Missense_Mutation p.R977W 0.29 deleterious(0) probably_damaging(0.938) TCGA-X4-A8KQ-01 7 100730969 100730969 G C TRIM56 Missense_Mutation p.D126H 0.24 tolerated(0.22) possibly_damaging(0.875) TCGA-X4-A8KQ-01 7 116198999 116198999 G T CAV1 Splice_Site p.X66_splice 0.29 TCGA-X4-A8KQ-01 7 5568185 5568185 G A ACTB Missense_Mutation p.R177C 0.08 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-X4-A8KQ-01 7 5944785 5944785 T G CCZ1 Missense_Mutation p.F195V 0.14 deleterious(0) possibly_damaging(0.823) TCGA-X4-A8KQ-01 7 92732960 92732960 A - SAMD9 Frame_Shift_Del p.I818* 0.17 TCGA-X4-A8KQ-01 7 92760501 92760501 C T SAMD9L 3'UTR 0.11 TCGA-X4-A8KQ-01 9 115759948 115759948 G A ZNF883 RNA 0.08 TCGA-X4-A8KQ-01 9 136507474 136507474 C T DBH Missense_Mutation p.A211V 0.23 tolerated(1) benign(0.001) TCGA-X4-A8KQ-01 9 21228048 21228048 G C IFNA17 Missense_Mutation p.A42G 0.15 tolerated(1) benign(0.003) TCGA-X4-A8KQ-01 9 84562526 84562526 G A RP11-383M4.6 Intron 0.12 TCGA-X4-A8KQ-01 X 101768975 101768975 A C TMSB15A 3'UTR 0.53 TCGA-X4-A8KS-01 12 104063362 104063362 A G STAB2 Missense_Mutation p.Q739R 0.10 deleterious(0.01) benign(0.35) TCGA-X4-A8KS-01 12 2968836 2968836 G T FOXM1 Intron 0.15 TCGA-X4-A8KS-01 12 85521642 85521642 G A LRRIQ1 Missense_Mutation p.R1347H 0.06 deleterious(0) probably_damaging(1) TCGA-X4-A8KS-01 13 61986869 61986869 T C PCDH20 Missense_Mutation p.T455A 0.09 deleterious(0) possibly_damaging(0.9) TCGA-X4-A8KS-01 15 25200192 25200192 C T SNURF 5'UTR 0.14 TCGA-X4-A8KS-01 15 35189761 35189761 G A AQR Missense_Mutation p.R797C 0.09 deleterious(0) possibly_damaging(0.786) TCGA-X4-A8KS-01 17 47696431 47696431 C A SPOP Missense_Mutation p.W131L 0.05 deleterious(0.05) possibly_damaging(0.831) TCGA-X4-A8KS-01 17 8702014 8702014 G C MFSD6L Missense_Mutation p.A142G 0.07 tolerated(0.3) benign(0.055) TCGA-X4-A8KS-01 18 45566931 45566931 A C ZBTB7C Missense_Mutation p.I183S 0.08 tolerated(0.94) benign(0.036) TCGA-X4-A8KS-01 19 16860790 16860790 G C NWD1 Missense_Mutation p.R446P 0.12 tolerated(0.38) possibly_damaging(0.549) TCGA-X4-A8KS-01 19 54947584 54947584 C G TTYH1 3'UTR 0.23 TCGA-X4-A8KS-01 1 112240073 112240073 T C RAP1A Missense_Mutation p.V46A 0.06 deleterious(0) benign(0.076) TCGA-X4-A8KS-01 1 152681746 152681746 C A LCE4A Missense_Mutation p.H65Q 0.10 tolerated_low_confidence(0.34) unknown(0) TCGA-X4-A8KS-01 1 173542454 173542454 T A SLC9C2 Missense_Mutation p.I305F 0.11 deleterious(0.02) benign(0.424) TCGA-X4-A8KS-01 1 47746429 47746429 C T STIL Silent p.P567P 0.05 TCGA-X4-A8KS-01 20 5099414 5099414 C T PCNA Splice_Site p.X107_splice 0.07 TCGA-X4-A8KS-01 2 187626300 187626300 C A FAM171B Missense_Mutation p.H411N 0.11 tolerated(0.19) probably_damaging(0.999) TCGA-X4-A8KS-01 2 47637343 47637343 A G MSH2 Silent p.R159R 0.09 TCGA-X4-A8KS-01 2 63175612 63175612 T C EHBP1 Missense_Mutation p.V579A 0.08 deleterious(0.02) benign(0.201) TCGA-X4-A8KS-01 3 27453211 27453211 T C SLC4A7 Missense_Mutation p.N554S 0.23 tolerated(0.07) probably_damaging(0.995) TCGA-X4-A8KS-01 3 7782053 7782054 - A GRM7 Frame_Shift_Ins p.K906Efs*6 0.10 TCGA-X4-A8KS-01 5 140554081 140554081 C A PCDHB7 Missense_Mutation p.N555K 0.15 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-X4-A8KS-01 5 2755214 2755214 G A C5orf38 3'UTR 0.14 TCGA-X4-A8KS-01 5 52360743 52360743 G A ITGA2 Missense_Mutation p.G535D 0.09 tolerated(0.11) probably_damaging(0.909) TCGA-X4-A8KS-01 6 70639450 70639450 G C COL19A1 Missense_Mutation p.G175A 0.11 tolerated(0.6) unknown(0) TCGA-X4-A8KS-01 7 80418784 80418784 C G SEMA3C Missense_Mutation p.V398L 0.09 tolerated(0.19) probably_damaging(0.995) TCGA-X4-A8KS-01 8 118175681 118175681 C T SLC30A8 Silent p.A247A 0.10 TCGA-X4-A8KS-01 9 139929238 139929238 G A C9orf139 Missense_Mutation p.R102H 0.10 tolerated_low_confidence(0.47) possibly_damaging(0.715) TCGA-X4-A8KS-01 X 100667605 100667605 A G HNRNPH2 Missense_Mutation p.Y210C 0.14 tolerated(0.06) benign(0.285) TCGA-XA-A8JR-01 10 125434376 125434376 G A GPR26 Silent p.Q237Q 0.15 TCGA-XA-A8JR-01 11 1860932 1860932 A G TNNI2 Silent p.G2G 0.12 TCGA-XA-A8JR-01 12 108917163 108917163 G A SART3 3'UTR 0.11 TCGA-XA-A8JR-01 12 56120995 56120995 G A CD63 Silent p.F65F 0.12 TCGA-XA-A8JR-01 13 77672530 77672530 G C MYCBP2 Missense_Mutation p.S2882C 0.10 probably_damaging(0.994) TCGA-XA-A8JR-01 16 69194305 69194305 T C CIRH1A Silent p.N497N 0.14 TCGA-XA-A8JR-01 17 49239114 49239114 G A NME1 Missense_Mutation p.V148M 0.22 deleterious(0) benign(0.116) TCGA-XA-A8JR-01 19 8156424 8156424 T C FBN3 Missense_Mutation p.T1986A 0.06 tolerated(0.07) benign(0.032) TCGA-XA-A8JR-01 1 223178296 223178296 A T DISP1 Missense_Mutation p.E1186V 0.07 tolerated(0.1) benign(0.094) TCGA-XA-A8JR-01 1 228486309 228486309 G A OBSCN Silent p.Q4367Q 0.08 TCGA-XA-A8JR-01 1 42046696 42046696 A - HIVEP3 Frame_Shift_Del p.L1258Rfs*126 0.12 TCGA-XA-A8JR-01 1 59126842 59126842 T G MYSM1 Missense_Mutation p.K776N 0.14 deleterious(0) probably_damaging(0.999) TCGA-XA-A8JR-01 20 23347711 23347711 T A GZF1 Missense_Mutation p.I479N 0.10 tolerated(0.19) possibly_damaging(0.811) TCGA-XA-A8JR-01 20 34242229 34242229 A G RBM12 Missense_Mutation p.V339A 0.04 tolerated(0.54) possibly_damaging(0.711) TCGA-XA-A8JR-01 20 37400246 37400246 T - ACTR5 Frame_Shift_Del p.R538Vfs*5 0.09 TCGA-XA-A8JR-01 2 37873410 37873410 G C CDC42EP3 Missense_Mutation p.I107M 0.10 deleterious(0) probably_damaging(0.999) TCGA-XA-A8JR-01 2 99681428 99681428 C A TSGA10 Missense_Mutation p.D460Y 0.12 deleterious(0) probably_damaging(0.922) TCGA-XA-A8JR-01 3 142151666 142151666 C T XRN1 Missense_Mutation p.D49N 0.07 tolerated(0.14) benign(0.065) TCGA-XA-A8JR-01 4 186392098 186392098 C G CCDC110 Splice_Site p.X39_splice 0.23 TCGA-XA-A8JR-01 4 77941726 77941726 C T SEPT11 Nonsense_Mutation p.R286* 0.19 TCGA-XA-A8JR-01 5 140215957 140215957 C T PCDHA7 Silent p.A663A 0.15 TCGA-XA-A8JR-01 6 7240690 7240690 T A RREB1 Nonsense_Mutation p.C1276* 0.17 TCGA-XA-A8JR-01 6 75884866 75884866 G A COL12A1 Silent p.T866T 0.13 TCGA-XA-A8JR-01 7 136700393 136700393 C G CHRM2 Missense_Mutation p.Q261E 0.12 tolerated(0.65) benign(0.229) TCGA-XA-A8JR-01 7 1477839 1477839 G A MICALL2 Silent p.L735L 0.33 TCGA-XA-A8JR-01 8 42932435 42932435 G A FNTA Nonsense_Mutation p.W237* 0.05 TCGA-XA-A8JR-01 X 128599818 128599818 T G SMARCA1 Intron 0.09 TCGA-XA-A8JR-01 X 44918544 44918545 - G KDM6A Frame_Shift_Ins p.C343Wfs*21 0.27 TCGA-XJ-A83F-01 11 123777934 123777934 A T OR8D4 Missense_Mutation p.S266C 0.14 deleterious(0.03) possibly_damaging(0.8) TCGA-XJ-A83F-01 11 64601218 64601218 G A CDC42BPG Missense_Mutation p.R853C 0.27 deleterious(0.04) probably_damaging(0.939) TCGA-XJ-A83F-01 11 92534829 92534829 G A FAT3 Missense_Mutation p.E2884K 0.13 probably_damaging(1) TCGA-XJ-A83F-01 12 123419855 123419855 C T ABCB9 Missense_Mutation p.G623S 0.37 tolerated(0.72) benign(0.001) TCGA-XJ-A83F-01 12 27842018 27842018 T A PPFIBP1 Missense_Mutation p.L862Q 0.40 deleterious(0) probably_damaging(1) TCGA-XJ-A83F-01 12 40716261 40716261 G A LRRK2 Missense_Mutation p.E1820K 0.40 tolerated(0.17) benign(0.012) TCGA-XJ-A83F-01 12 52284523 52284523 G C ANKRD33 Missense_Mutation p.A265P 0.33 tolerated(0.26) benign(0.334) TCGA-XJ-A83F-01 13 88329124 88329124 G A SLITRK5 Missense_Mutation p.R494H 0.07 tolerated(0.12) benign(0.176) TCGA-XJ-A83F-01 15 74703250 74703250 G A SEMA7A Silent p.H572H 0.37 TCGA-XJ-A83F-01 16 28898525 28898525 T C ATP2A1 Missense_Mutation p.V187A 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-XJ-A83F-01 17 1649162 1649162 C T SERPINF2 Missense_Mutation p.S109L 0.32 deleterious(0) probably_damaging(1) TCGA-XJ-A83F-01 18 58039090 58039090 G A MC4R Missense_Mutation p.R165W 0.72 deleterious(0) probably_damaging(0.957) TCGA-XJ-A83F-01 19 17452312 17452312 C G GTPBP3 Missense_Mutation p.P459A 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-XJ-A83F-01 19 57175802 57175802 G A ZNF835 Silent p.C255C 0.50 TCGA-XJ-A83F-01 1 1309670 1309670 A C AURKAIP1 Missense_Mutation p.S70A 0.17 tolerated(0.22) benign(0.001) TCGA-XJ-A83F-01 1 157668405 157668405 C G FCRL3 Missense_Mutation p.A23P 0.17 tolerated(0.3) probably_damaging(0.956) TCGA-XJ-A83F-01 1 171756946 171756946 C T METTL13 Silent p.S395S 0.43 TCGA-XJ-A83F-01 21 28306854 28306854 C T ADAMTS5 Silent p.T540T 0.22 TCGA-XJ-A83F-01 21 33318387 33318387 C T HUNK Missense_Mutation p.S217L 0.34 deleterious(0.01) probably_damaging(0.946) TCGA-XJ-A83F-01 22 19365430 19365430 G - HIRA Frame_Shift_Del p.S526Vfs*14 0.26 TCGA-XJ-A83F-01 2 179592369 179592369 A G TTN Missense_Mutation p.C6646R 0.34 TCGA-XJ-A83F-01 2 73678510 73678510 C T ALMS1 Missense_Mutation p.A1618V 0.13 possibly_damaging(0.467) TCGA-XJ-A83F-01 3 108175727 108175727 A G MYH15 Missense_Mutation p.I695T 0.43 tolerated(0.06) benign(0.077) TCGA-XJ-A83F-01 3 44488987 44488987 C A ZNF445 Missense_Mutation p.V726F 0.29 tolerated(0.16) unknown(0) TCGA-XJ-A83F-01 3 48611982 48611982 C T COL7A1 Missense_Mutation p.G2132D 0.24 unknown(0) TCGA-XJ-A83F-01 4 184930356 184930356 C T STOX2 Missense_Mutation p.T122M 0.12 tolerated(1) benign(0.009) TCGA-XJ-A83F-01 4 57216169 57216171 AAG - AASDH In_Frame_Del p.F582del 0.35 TCGA-XJ-A83F-01 5 127516605 127516605 C T SLC12A2 Missense_Mutation p.T1044M 0.36 deleterious(0) probably_damaging(0.953) TCGA-XJ-A83F-01 5 154173201 154173201 A C LARP1 Missense_Mutation p.E185D 0.40 tolerated(0.49) benign(0.022) TCGA-XJ-A83F-01 5 180030327 180030327 C T FLT4 Silent p.R1319R 0.53 TCGA-XJ-A83F-01 6 152725360 152725360 C T SYNE1 Silent p.P2271P 0.10 TCGA-XJ-A83F-01 6 152751620 152751620 T C SYNE1 Silent p.R1562R 0.42 TCGA-XJ-A83F-01 6 27775389 27775389 A T HIST1H2BL Missense_Mutation p.V99E 0.34 deleterious_low_confidence(0) benign(0.05) TCGA-XJ-A83F-01 6 39278711 39278711 C T KCNK17 Missense_Mutation p.V104M 0.31 tolerated(0.25) benign(0.073) TCGA-XJ-A83F-01 7 17379808 17379808 C G AHR Missense_Mutation p.Q787E 0.40 tolerated_low_confidence(0.06) benign(0.013) TCGA-XJ-A83F-01 7 4007037 4007037 C T SDK1 Missense_Mutation p.A506V 0.14 deleterious(0.03) probably_damaging(0.98) TCGA-XJ-A83F-01 X 144909435 144909435 G A TMEM257 Silent p.T80T 0.08 TCGA-XJ-A83G-01 10 104140091 104140091 A G GBF1 Missense_Mutation p.Y1654C 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-XJ-A83G-01 10 127429204 127429204 A C EDRF1 Missense_Mutation p.L718F 0.23 tolerated(0.14) benign(0.191) TCGA-XJ-A83G-01 10 70411669 70411669 C A TET1 Missense_Mutation p.A1448D 0.08 deleterious(0) probably_damaging(0.999) TCGA-XJ-A83G-01 12 112186219 112186219 G T ACAD10 Missense_Mutation p.D893Y 0.25 deleterious(0) possibly_damaging(0.899) TCGA-XJ-A83G-01 12 26714879 26714879 T - ITPR2 Frame_Shift_Del p.N1546Ifs*19 0.20 TCGA-XJ-A83G-01 12 49233652 49233652 T C DDX23 Missense_Mutation p.K152R 0.07 tolerated(0.24) benign(0.242) TCGA-XJ-A83G-01 14 33292870 33292870 G A AKAP6 Missense_Mutation p.E1951K 0.18 tolerated(0.17) benign(0.242) TCGA-XJ-A83G-01 14 73719406 73719406 C T PAPLN Silent p.P312P 0.18 TCGA-XJ-A83G-01 15 65627682 65627682 G A IGDCC3 Missense_Mutation p.A211V 0.14 deleterious(0) possibly_damaging(0.812) TCGA-XJ-A83G-01 15 74472523 74472523 G A STRA6 Silent p.R673R 0.19 TCGA-XJ-A83G-01 15 78473256 78473256 C T ACSBG1 Missense_Mutation p.R365Q 0.29 tolerated(0.49) benign(0.2) TCGA-XJ-A83G-01 17 10353814 10353814 G A MYH4 Silent p.Y1379Y 0.04 TCGA-XJ-A83G-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.06 deleterious(0.03) probably_damaging(0.998) TCGA-XJ-A83G-01 17 4927021 4927021 C T KIF1C Missense_Mutation p.R963C 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.876) TCGA-XJ-A83G-01 1 110230477 110230477 A T GSTM1 5'UTR 0.37 TCGA-XJ-A83G-01 1 152487856 152487856 C T CRCT1 5'UTR 0.16 TCGA-XJ-A83G-01 1 172278018 172278018 G C DNM3 Intron 0.27 TCGA-XJ-A83G-01 1 198711392 198711392 G A PTPRC Missense_Mutation p.G865R 0.18 deleterious(0) probably_damaging(1) TCGA-XJ-A83G-01 1 22974075 22974075 C T C1QC Silent p.C179C 0.13 TCGA-XJ-A83G-01 1 28764899 28764899 G T PHACTR4 Nonsense_Mutation p.G2* 0.21 TCGA-XJ-A83G-01 1 3662338 3662338 C T TP73-AS1 RNA 0.12 TCGA-XJ-A83G-01 1 92595245 92595245 G A BTBD8 Missense_Mutation p.A222T 0.09 deleterious(0) probably_damaging(0.993) TCGA-XJ-A83G-01 22 39141779 39141779 G A SUN2 Silent p.F262F 0.27 TCGA-XJ-A83G-01 2 188343393 188343393 A G TFPI Intron 0.18 TCGA-XJ-A83G-01 3 36587795 36587795 C T STAC 3'UTR 0.08 TCGA-XJ-A83G-01 3 97668717 97668717 G A MINA Missense_Mutation p.A344V 0.16 tolerated(0.37) benign(0.001) TCGA-XJ-A83G-01 4 70361505 70361505 C T UGT2B4 Silent p.K25K 0.03 TCGA-XJ-A83G-01 6 51882246 51882256 TGCCCAATGAT ATGAG PKHD1 In_Frame_Del p.D1851_A1854delinsAH 0.23 TCGA-XJ-A83G-01 6 51882256 51882256 T G PKHD1 Missense_Mutation p.D1851A 0.21 tolerated(0.29) benign(0.006) TCGA-XJ-A83G-01 9 137802991 137802991 C T FCN1 Missense_Mutation p.G241R 0.23 deleterious(0.01) benign(0.109) TCGA-XJ-A83G-01 X 151869898 151869898 G T MAGEA6 Missense_Mutation p.M196I 0.47 tolerated(0.12) benign(0.062) TCGA-XJ-A83G-01 X 91090586 91090586 A T PCDH11X Missense_Mutation p.Y28F 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-XJ-A83H-01 10 128118366 128118366 G A C10orf90 Nonsense_Mutation p.R651* 0.05 TCGA-XJ-A83H-01 10 73544687 73544687 G A CDH23 Missense_Mutation p.D1853N 0.25 tolerated(0.09) benign(0.202) TCGA-XJ-A83H-01 11 118255419 118255419 G T UBE4A Missense_Mutation p.W763L 0.44 deleterious(0) probably_damaging(0.995) TCGA-XJ-A83H-01 11 123597404 123597404 C A ZNF202 Silent p.L416L 0.10 TCGA-XJ-A83H-01 11 56043659 56043659 G A OR5T1 Missense_Mutation p.G182E 0.15 deleterious(0.02) benign(0.32) TCGA-XJ-A83H-01 12 117486955 117486955 C T TESC Missense_Mutation p.R73H 0.07 tolerated(0.35) benign(0.004) TCGA-XJ-A83H-01 12 124496834 124496834 T G ZNF664 Missense_Mutation p.I48S 0.11 tolerated(0.62) benign(0.073) TCGA-XJ-A83H-01 14 23586839 23586839 T C CEBPE Missense_Mutation p.K235E 0.11 deleterious(0.01) probably_damaging(0.989) TCGA-XJ-A83H-01 14 52478320 52478320 G A NID2 Missense_Mutation p.R1168C 0.22 deleterious(0) probably_damaging(0.998) TCGA-XJ-A83H-01 15 66795596 66795596 G T RPL4 Intron 0.09 TCGA-XJ-A83H-01 16 1570707 1570707 C G IFT140 Missense_Mutation p.E1186Q 0.37 deleterious(0.03) possibly_damaging(0.623) TCGA-XJ-A83H-01 17 45016153 45016153 C T GOSR2 Intron 0.12 TCGA-XJ-A83H-01 17 56699054 56699054 G A TEX14 Missense_Mutation p.R171W 0.09 deleterious(0.03) benign(0.1) TCGA-XJ-A83H-01 17 61996190 61996190 T C GH1 5'Flank 0.13 TCGA-XJ-A83H-01 17 62500099 62500102 ACAG - DDX5 Splice_Site p.X147_splice 0.27 TCGA-XJ-A83H-01 17 74527562 74527562 C T CYGB Missense_Mutation p.V119M 0.29 deleterious(0) probably_damaging(1) TCGA-XJ-A83H-01 18 54398817 54398817 G A WDR7 Missense_Mutation p.A660T 0.05 tolerated(0.56) benign(0.046) TCGA-XJ-A83H-01 19 11303962 11303962 C T KANK2 Missense_Mutation p.R265Q 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-XJ-A83H-01 1 17266574 17266574 C A CROCC Missense_Mutation p.N598K 0.23 benign(0.242) TCGA-XJ-A83H-01 1 93301888 93301890 GGC - RPL5 In_Frame_Del p.G156del 0.11 TCGA-XJ-A83H-01 21 11020856 11020856 G A BAGE2 RNA 0.03 TCGA-XJ-A83H-01 22 39908032 39908032 G C MIEF1 Splice_Site p.X108_splice 0.09 TCGA-XJ-A83H-01 2 107459775 107459775 C T ST6GAL2 Missense_Mutation p.R220H 0.30 probably_damaging(0.975) TCGA-XJ-A83H-01 2 172666119 172666119 G A SLC25A12 Silent p.G434G 0.04 TCGA-XJ-A83H-01 2 191362263 191362263 C T MFSD6 Missense_Mutation p.R664C 0.06 deleterious(0) possibly_damaging(0.893) TCGA-XJ-A83H-01 2 223065931 223065931 C T PAX3 Missense_Mutation p.D494N 0.08 tolerated_low_confidence(0.36) benign(0) TCGA-XJ-A83H-01 3 112324432 112324432 C T CCDC80 Silent p.S895S 0.16 TCGA-XJ-A83H-01 3 138024911 138024911 T G NME9 Missense_Mutation p.T130P 0.05 deleterious(0.01) possibly_damaging(0.733) TCGA-XJ-A83H-01 3 148614585 148614585 C G CPA3 3'UTR 0.29 TCGA-XJ-A83H-01 3 47037252 47037252 C T NBEAL2 Silent p.A649A 0.08 TCGA-XJ-A83H-01 3 53892809 53892809 T G IL17RB Missense_Mutation p.C271G 0.06 deleterious(0.04) probably_damaging(0.968) TCGA-XJ-A83H-01 3 64085458 64085458 C T PRICKLE2 Missense_Mutation p.A602T 0.07 tolerated(0.68) benign(0.002) TCGA-XJ-A83H-01 4 154510059 154510059 G A KIAA0922 Missense_Mutation p.G524R 0.05 tolerated(0.85) benign(0.007) TCGA-XJ-A83H-01 4 174253268 174253273 TCTTCT - HMGB2 In_Frame_Del p.E196_E197del 0.18 TCGA-XJ-A83H-01 4 187455416 187455416 C T MTNR1A Silent p.L160L 0.19 TCGA-XJ-A83H-01 5 127653927 127653927 T C FBN2 Missense_Mutation p.N1544S 0.05 tolerated(0.23) possibly_damaging(0.823) TCGA-XJ-A83H-01 5 130799890 130799890 T C RAPGEF6 Missense_Mutation p.E775G 0.26 deleterious(0) possibly_damaging(0.852) TCGA-XJ-A83H-01 5 43293008 43293008 A T HMGCS1 Silent p.G417G 0.09 TCGA-XJ-A83H-01 5 49706712 49706712 T A EMB Missense_Mutation p.K157N 0.09 deleterious(0.03) possibly_damaging(0.67) TCGA-XJ-A83H-01 5 98234109 98234113 AACCA T CHD1 Frame_Shift_Del p.G405Ifs*52 0.25 TCGA-XJ-A83H-01 6 32180342 32180342 C A NOTCH4 Silent p.G863G 0.09 TCGA-XJ-A83H-01 6 43182853 43182853 G C CUL9 Missense_Mutation p.G1909R 0.35 tolerated(0.55) possibly_damaging(0.742) TCGA-XJ-A83H-01 7 107340565 107340565 C A SLC26A4 Missense_Mutation p.S551Y 0.07 tolerated(0.08) benign(0.073) TCGA-XJ-A83H-01 7 2415103 2415103 G A EIF3B Missense_Mutation p.V657I 0.08 tolerated(0.41) possibly_damaging(0.639) TCGA-XJ-A83H-01 8 70515888 70515888 G C SULF1 Missense_Mutation p.R415T 0.06 deleterious(0) probably_damaging(0.939) TCGA-XJ-A9DI-01 10 101371082 101371082 G A SLC25A28 Missense_Mutation p.R207W 0.04 deleterious(0) probably_damaging(0.948) TCGA-XJ-A9DI-01 10 99968462 99968462 A G R3HCC1L Silent p.A197A 0.09 TCGA-XJ-A9DI-01 12 124118414 124118414 C T GTF2H3 Missense_Mutation p.S3L 0.08 deleterious(0.01) benign(0.003) TCGA-XJ-A9DI-01 17 40937388 40937388 T C WNK4 Missense_Mutation p.L455P 0.29 deleterious(0) unknown(0) TCGA-XJ-A9DI-01 18 14183714 14183714 A G ANKRD20A5P RNA 0.04 TCGA-XJ-A9DI-01 19 35761491 35761491 C T USF2 Nonsense_Mutation p.Q191* 0.15 TCGA-XJ-A9DI-01 1 109608797 109608797 T C TAF13 Missense_Mutation p.D55G 0.07 tolerated(0.05) possibly_damaging(0.507) TCGA-XJ-A9DI-01 1 172555033 172555033 G A SUCO Missense_Mutation p.A535T 0.03 tolerated(0.68) benign(0.001) TCGA-XJ-A9DI-01 1 179347852 179347852 G A AXDND1 Missense_Mutation p.R152H 0.08 tolerated(0.37) benign(0) TCGA-XJ-A9DI-01 1 197056095 197056095 C T ASPM Missense_Mutation p.R3390Q 0.04 tolerated(0.15) benign(0.053) TCGA-XJ-A9DI-01 1 223465960 223465960 C T SUSD4 Missense_Mutation p.G61D 0.06 deleterious(0.01) probably_damaging(1) TCGA-XJ-A9DI-01 1 62582993 62582993 G A INADL Intron 0.12 TCGA-XJ-A9DI-01 22 30398881 30398881 C G MTMR3 Missense_Mutation p.S190R 0.06 deleterious(0) probably_damaging(0.976) TCGA-XJ-A9DI-01 22 43529100 43529100 C T MCAT Silent p.V374V 0.07 TCGA-XJ-A9DI-01 2 118865919 118865919 T C INSIG2 3'UTR 0.09 TCGA-XJ-A9DI-01 2 217341863 217341863 G A SMARCAL1 Missense_Mutation p.R820H 0.24 deleterious(0) probably_damaging(1) TCGA-XJ-A9DI-01 2 74757848 74757848 G A HTRA2 Missense_Mutation p.R204H 0.06 tolerated(0.21) probably_damaging(1) TCGA-XJ-A9DI-01 2 89247114 89247114 C A IGKV1-5 Missense_Mutation p.G19V 0.06 deleterious(0.02) benign(0.231) TCGA-XJ-A9DI-01 5 169504824 169504824 C A DOCK2 Missense_Mutation p.S1659R 0.09 deleterious(0.03) benign(0) TCGA-XJ-A9DI-01 7 106509421 106509421 G A PIK3CG Missense_Mutation p.R472H 0.06 deleterious(0) probably_damaging(0.998) TCGA-XJ-A9DI-01 7 47408548 47408548 G A TNS3 Silent p.P565P 0.06 TCGA-XJ-A9DI-01 8 59412637 59412637 A T CYP7A1 Silent p.I7I 0.06 TCGA-XJ-A9DI-01 8 61655594 61655594 C T CHD7 Nonsense_Mutation p.Q535* 0.24 TCGA-XJ-A9DI-01 8 8748158 8748158 C T MFHAS1 Missense_Mutation p.R804Q 0.09 tolerated(0.07) probably_damaging(0.992) TCGA-XJ-A9DK-01 12 33529773 33529773 T A SYT10 Missense_Mutation p.T522S 0.06 tolerated_low_confidence(0.84) benign(0.018) TCGA-XJ-A9DK-01 5 161580306 161580306 C T GABRG2 Missense_Mutation p.R494W 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-XJ-A9DK-01 6 157502129 157502129 G A ARID1B Silent p.G1054G 0.06 TCGA-XJ-A9DK-01 9 104239325 104239325 C T TMEM246 Missense_Mutation p.R17Q 0.09 tolerated(0.33) benign(0) TCGA-XJ-A9DK-01 9 90343270 90343270 G T CTSL Missense_Mutation p.D119Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-XJ-A9DQ-01 10 18903472 18903472 T G NSUN6 Missense_Mutation p.E164D 0.12 tolerated(0.06) benign(0.032) TCGA-XJ-A9DQ-01 10 96802770 96802770 C A CYP2C8 Missense_Mutation p.R342S 0.05 deleterious(0) probably_damaging(0.985) TCGA-XJ-A9DQ-01 15 45387752 45387752 C T DUOX2 Nonsense_Mutation p.W1374* 0.06 TCGA-XJ-A9DQ-01 16 30724602 30724602 T C SRCAP Missense_Mutation p.F735S 0.13 unknown(0) TCGA-XJ-A9DQ-01 17 48616673 48616673 C T EPN3 Silent p.S296S 0.08 TCGA-XJ-A9DQ-01 17 80011240 80011240 C A GPS1 Missense_Mutation p.L82M 0.29 tolerated(0.12) possibly_damaging(0.477) TCGA-XJ-A9DQ-01 18 13742584 13742584 T C RNMT Missense_Mutation p.Y358H 0.07 deleterious(0) probably_damaging(1) TCGA-XJ-A9DQ-01 19 44500900 44500900 C G ZNF155 Missense_Mutation p.F308L 0.05 deleterious(0) probably_damaging(0.996) TCGA-XJ-A9DQ-01 19 51051832 51051832 C T LRRC4B Silent p.T88T 0.27 TCGA-XJ-A9DQ-01 3 129284742 129284742 G A PLXND1 Missense_Mutation p.A1437V 0.14 deleterious(0.04) benign(0.258) TCGA-XJ-A9DQ-01 9 82337508 82337508 C T TLE4 Missense_Mutation p.A710V 0.05 deleterious(0) probably_damaging(0.999) TCGA-XJ-A9DX-01 10 106974307 106974307 C T SORCS3 Missense_Mutation p.T828M 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-XJ-A9DX-01 10 13658529 13658529 C T RP11-295P9.3 Silent p.D185D 0.30 TCGA-XJ-A9DX-01 10 26993670 26993670 G A PDSS1 Missense_Mutation p.R76Q 0.36 tolerated(0.26) benign(0.007) TCGA-XJ-A9DX-01 10 5789870 5789870 C T FAM208B Missense_Mutation p.P1496S 0.24 deleterious(0.04) benign(0.4) TCGA-XJ-A9DX-01 10 94353078 94353078 C A KIF11 5'UTR 0.44 TCGA-XJ-A9DX-01 10 96331150 96331150 T G HELLS Missense_Mutation p.I147M 0.17 tolerated(0.07) possibly_damaging(0.54) TCGA-XJ-A9DX-01 11 2154249 2154249 C T IGF2 Missense_Mutation p.A227T 0.35 tolerated(0.1) benign(0.025) TCGA-XJ-A9DX-01 11 57144356 57144356 G A PRG3 Silent p.C215C 0.25 TCGA-XJ-A9DX-01 12 100795591 100795591 C A SLC17A8 Missense_Mutation p.A238D 0.23 deleterious(0) probably_damaging(0.98) TCGA-XJ-A9DX-01 12 108931976 108931976 G C SART3 Missense_Mutation p.R356G 0.24 tolerated(0.1) probably_damaging(0.944) TCGA-XJ-A9DX-01 12 11244069 11244069 T G TAS2R43 Missense_Mutation p.S254R 0.10 tolerated(1) benign(0) TCGA-XJ-A9DX-01 12 56532056 56532056 G A ESYT1 Silent p.E789E 0.31 TCGA-XJ-A9DX-01 12 5687128 5687129 - T ANO2 Frame_Shift_Ins p.I811Nfs*57 0.25 TCGA-XJ-A9DX-01 12 89918908 89918908 C T POC1B-GALNT4 Missense_Mutation p.G30D 0.05 tolerated(0.09) benign(0.032) TCGA-XJ-A9DX-01 12 91552274 91552274 C A DCN Missense_Mutation p.V113F 0.27 tolerated(0.7) possibly_damaging(0.733) TCGA-XJ-A9DX-01 13 23909827 23909827 G T SACS Missense_Mutation p.L2730M 0.29 probably_damaging(0.998) TCGA-XJ-A9DX-01 13 37607706 37607706 T C SUPT20H Missense_Mutation p.E196G 0.24 deleterious(0) probably_damaging(0.951) TCGA-XJ-A9DX-01 14 22038145 22038146 - CTCC OR10G3 Frame_Shift_Ins p.A244Gfs*22 0.35 TCGA-XJ-A9DX-01 14 31765178 31765178 G A RP11-596D21.1 Intron 0.19 TCGA-XJ-A9DX-01 14 96707048 96707048 C T BDKRB2 Missense_Mutation p.T128M 0.08 tolerated(0.09) benign(0.383) TCGA-XJ-A9DX-01 15 102303100 102303100 C T DNM1P47 RNA 0.17 TCGA-XJ-A9DX-01 16 31122508 31122508 C T BCKDK Silent p.Y271Y 0.22 TCGA-XJ-A9DX-01 16 31539920 31539920 G T AHSP Nonsense_Mutation p.E73* 0.19 TCGA-XJ-A9DX-01 17 18181585 18181585 A G TOP3A Missense_Mutation p.L744P 0.43 deleterious(0) probably_damaging(0.971) TCGA-XJ-A9DX-01 17 40836068 40836068 T A CNTNAP1 Missense_Mutation p.S62T 0.51 deleterious(0.01) probably_damaging(0.929) TCGA-XJ-A9DX-01 17 60345580 60345580 C T TBC1D3P2 RNA 0.32 TCGA-XJ-A9DX-01 18 28719853 28719853 C A DSC1 Missense_Mutation p.R507S 0.38 tolerated(0.12) possibly_damaging(0.811) TCGA-XJ-A9DX-01 19 10434100 10434100 C G RAVER1 Missense_Mutation p.G317A 0.43 deleterious(0) benign(0.374) TCGA-XJ-A9DX-01 19 37369039 37369039 A T ZNF345 Missense_Mutation p.Y436F 0.19 tolerated(0.07) benign(0.007) TCGA-XJ-A9DX-01 19 38643562 38643562 G A SIPA1L3 Missense_Mutation p.G1206S 0.31 tolerated(0.8) benign(0.006) TCGA-XJ-A9DX-01 19 58983378 58983378 A - ZNF324 Frame_Shift_Del p.K507Rfs*58 0.16 TCGA-XJ-A9DX-01 1 104112761 104112761 G A AMY2B Intron 0.35 TCGA-XJ-A9DX-01 1 113238156 113238156 C T MOV10 Missense_Mutation p.A580V 0.31 deleterious(0) probably_damaging(0.998) TCGA-XJ-A9DX-01 1 117699591 117699599 TCTACAACC - VTCN1 Intron 0.18 TCGA-XJ-A9DX-01 1 12438521 12438521 A G VPS13D Missense_Mutation p.T3653A 0.11 benign(0.011) TCGA-XJ-A9DX-01 1 150679186 150679187 GA - HORMAD1 Frame_Shift_Del p.S216Nfs*13 0.39 TCGA-XJ-A9DX-01 1 152059578 152059578 G T TCHHL1 Missense_Mutation p.Q194K 0.05 tolerated(0.08) benign(0.376) TCGA-XJ-A9DX-01 1 18152662 18152662 C T ACTL8 Missense_Mutation p.P250L 0.12 tolerated(0.08) possibly_damaging(0.71) TCGA-XJ-A9DX-01 1 193150245 193150245 T C B3GALT2 Missense_Mutation p.S150G 0.26 deleterious(0.02) benign(0.009) TCGA-XJ-A9DX-01 1 27939804 27939804 G T FGR Missense_Mutation p.T436N 0.49 deleterious(0) possibly_damaging(0.605) TCGA-XJ-A9DX-01 1 32745333 32745333 G A LCK Silent p.L342L 0.31 TCGA-XJ-A9DX-01 1 75609544 75609544 G A LHX8 Missense_Mutation p.V209M 0.62 tolerated(0.22) benign(0.037) TCGA-XJ-A9DX-01 1 9782083 9782084 CT - PIK3CD Frame_Shift_Del p.Q704Efs*39 0.26 TCGA-XJ-A9DX-01 20 16712917 16712917 A G SNRPB2 Missense_Mutation p.E58G 0.30 deleterious(0.01) probably_damaging(0.955) TCGA-XJ-A9DX-01 20 32255490 32255490 G C ACTL10 Missense_Mutation p.A63P 0.29 deleterious(0.02) possibly_damaging(0.602) TCGA-XJ-A9DX-01 21 10907022 10907023 - T TPTE Frame_Shift_Ins p.N513Kfs*2 0.11 TCGA-XJ-A9DX-01 2 14774426 14774426 T C FAM84A Missense_Mutation p.L108P 0.58 deleterious(0.03) probably_damaging(0.993) TCGA-XJ-A9DX-01 2 71190765 71190765 G A ATP6V1B1 Missense_Mutation p.R375K 0.17 deleterious(0.02) benign(0.121) TCGA-XJ-A9DX-01 2 72958290 72958290 G A EXOC6B Missense_Mutation p.L138F 0.28 deleterious(0) probably_damaging(0.997) TCGA-XJ-A9DX-01 2 85573211 85573211 C A RETSAT Missense_Mutation p.S335I 0.09 deleterious(0.01) benign(0.027) TCGA-XJ-A9DX-01 3 111312954 111312954 C T ZBED2 Missense_Mutation p.G32E 0.48 tolerated_low_confidence(0.2) possibly_damaging(0.684) TCGA-XJ-A9DX-01 3 124953120 124953120 G T ZNF148 Missense_Mutation p.H241N 0.17 deleterious(0.01) benign(0.401) TCGA-XJ-A9DX-01 3 49700781 49700781 C T BSN Silent p.S3730S 0.10 TCGA-XJ-A9DX-01 4 164506901 164506901 C A MARCH1 Missense_Mutation p.K141N 0.21 deleterious(0.02) benign(0.188) TCGA-XJ-A9DX-01 4 70823037 70823037 G T CSN2 Silent p.I210I 0.35 TCGA-XJ-A9DX-01 4 80329310 80329310 C T GK2 Silent p.A15A 0.06 TCGA-XJ-A9DX-01 4 90857770 90857770 C T MMRN1 Missense_Mutation p.S980F 0.18 deleterious(0) probably_damaging(0.999) TCGA-XJ-A9DX-01 5 132160411 132160411 A G SHROOM1 Silent p.P379P 0.36 TCGA-XJ-A9DX-01 5 137727794 137727794 G T KDM3B Nonsense_Mutation p.E825* 0.07 TCGA-XJ-A9DX-01 5 140536940 140536940 C T PCDHB17 Missense_Mutation p.T455I 0.17 deleterious_low_confidence(0.01) benign(0.142) TCGA-XJ-A9DX-01 5 168112857 168112857 G A SLIT3 Silent p.N1130N 0.32 TCGA-XJ-A9DX-01 5 432967 432967 T C AHRR Silent p.T361T 0.47 TCGA-XJ-A9DX-01 5 55238515 55238515 G A IL6ST Missense_Mutation p.P668S 0.16 deleterious(0) probably_damaging(1) TCGA-XJ-A9DX-01 5 55251876 55251876 G A IL6ST Missense_Mutation p.T415I 0.19 tolerated(0.22) benign(0.007) TCGA-XJ-A9DX-01 5 7826908 7826908 G A ADCY2 Missense_Mutation p.G1067E 0.19 deleterious(0) probably_damaging(0.997) TCGA-XJ-A9DX-01 5 96362364 96362364 A T LNPEP Nonsense_Mutation p.K923* 0.34 TCGA-XJ-A9DX-01 6 26156570 26156570 G C HIST1H1E 5'UTR 0.16 TCGA-XJ-A9DX-01 6 34499497 34499497 G C PACSIN1 Missense_Mutation p.K386N 0.31 tolerated(0.25) benign(0.209) TCGA-XJ-A9DX-01 6 47200616 47200616 A G TNFRSF21 Missense_Mutation p.I618T 0.06 deleterious(0.03) benign(0.025) TCGA-XJ-A9DX-01 7 100395372 100395372 T G ZAN 3'UTR 0.12 TCGA-XJ-A9DX-01 7 140159705 140159705 C G MKRN1 Missense_Mutation p.E116Q 0.33 tolerated(0.15) possibly_damaging(0.623) TCGA-XJ-A9DX-01 7 44012856 44012856 G T POLR2J4 RNA 0.66 TCGA-XJ-A9DX-01 8 104337700 104337700 C T FZD6 Nonsense_Mutation p.Q456* 0.21 TCGA-XJ-A9DX-01 8 38271265 38271265 G A FGFR1 Missense_Mutation p.R815W 0.24 deleterious(0) probably_damaging(1) TCGA-XJ-A9DX-01 8 8560290 8560290 G A CLDN23 Missense_Mutation p.G128S 0.39 tolerated(1) benign(0.005) TCGA-XJ-A9DX-01 9 114206739 114206739 T C KIAA0368 Missense_Mutation p.I241M 0.34 deleterious(0) probably_damaging(0.986) TCGA-XJ-A9DX-01 9 125865401 125865402 - T RABGAP1 Frame_Shift_Ins p.E1041* 0.35 TCGA-XJ-A9DX-01 9 126134526 126134526 A C CRB2 Missense_Mutation p.N836T 0.19 deleterious(0) possibly_damaging(0.728) TCGA-XJ-A9DX-01 X 144904390 144904390 C T SLITRK2 Silent p.I149I 0.63 TCGA-XJ-A9DX-01 X 150349743 150349743 C A GPR50 Nonsense_Mutation p.S563* 0.86 TCGA-XK-AAIR-01 10 107022173 107022173 C T SORCS3 Silent p.N1176N 0.12 TCGA-XK-AAIR-01 11 122930500 122930500 A C HSPA8 Missense_Mutation p.C267W 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-XK-AAIR-01 11 56000287 56000287 C T OR5T2 Silent p.T125T 0.07 TCGA-XK-AAIR-01 14 52179204 52179204 T G FRMD6 Missense_Mutation p.L262V 0.18 tolerated(1) benign(0.003) TCGA-XK-AAIR-01 15 24921147 24921147 C T NPAP1 Missense_Mutation p.R45C 0.17 tolerated(0.1) possibly_damaging(0.835) TCGA-XK-AAIR-01 16 31004421 31004421 G A STX1B Intron 0.17 TCGA-XK-AAIR-01 17 18047889 18047889 G A MYO15A Missense_Mutation p.V2086M 0.14 unknown(0) TCGA-XK-AAIR-01 17 5048842 5048842 C A USP6 Missense_Mutation p.P712Q 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XK-AAIR-01 17 66251917 66251917 A G AMZ2 Missense_Mutation p.N276S 0.14 tolerated(0.05) probably_damaging(0.936) TCGA-XK-AAIR-01 17 66890448 66890448 A C ABCA8 Missense_Mutation p.Y928D 0.14 deleterious(0) possibly_damaging(0.836) TCGA-XK-AAIR-01 17 7849197 7849197 T G CNTROB Missense_Mutation p.V629G 0.06 tolerated(0.43) benign(0.156) TCGA-XK-AAIR-01 18 13884623 13884624 - CTA MC2R 3'UTR 0.12 TCGA-XK-AAIR-01 1 153012837 153012837 A G SPRR2D 5'UTR 0.07 TCGA-XK-AAIR-01 1 153941929 153941929 C G CREB3L4 Missense_Mutation p.L181V 0.11 tolerated(0.09) benign(0.297) TCGA-XK-AAIR-01 1 158592846 158592846 C T SPTA1 Missense_Mutation p.R2016H 0.10 tolerated(0.05) benign(0.069) TCGA-XK-AAIR-01 1 197896792 197896792 C A LHX9 Missense_Mutation p.R269S 0.11 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIR-01 1 245851624 245851624 C T KIF26B Missense_Mutation p.T1780M 0.15 tolerated(0.26) unknown(0) TCGA-XK-AAIR-01 20 1459194 1459194 C A SIRPB2 Silent p.G170G 0.10 TCGA-XK-AAIR-01 20 1961195 1961195 C T PDYN Missense_Mutation p.R180H 0.17 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIR-01 20 49196444 49196444 G A PTPN1 Missense_Mutation p.A357T 0.08 tolerated(0.54) benign(0) TCGA-XK-AAIR-01 20 62073806 62073806 C - KCNQ2 Frame_Shift_Del p.E257Rfs*16 0.21 TCGA-XK-AAIR-01 2 178981032 178981032 T C RBM45 Missense_Mutation p.V115A 0.16 tolerated(0.17) benign(0.015) TCGA-XK-AAIR-01 2 230662405 230662405 C - TRIP12 Splice_Site p.X1133_splice 0.15 TCGA-XK-AAIR-01 2 74785922 74785922 T G M1AP Missense_Mutation p.K505T 0.23 tolerated(0.06) possibly_damaging(0.474) TCGA-XK-AAIR-01 3 164739070 164739070 G T SI Silent p.I1067I 0.05 TCGA-XK-AAIR-01 4 1165174 1165174 C T SPON2 Missense_Mutation p.M107I 0.09 tolerated(0.09) benign(0.07) TCGA-XK-AAIR-01 4 1808052 1808052 C T FGFR3 Silent p.D678D 0.08 TCGA-XK-AAIR-01 6 151239756 151239756 C T MTHFD1L Silent p.L312L 0.11 TCGA-XK-AAIR-01 6 152708427 152708428 - T SYNE1 Frame_Shift_Ins p.I2756Nfs*19 0.16 TCGA-XK-AAIR-01 7 107703339 107703339 C T LAMB4 Silent p.P1054P 0.10 TCGA-XK-AAIR-01 7 148876613 148876613 G A ZNF398 Missense_Mutation p.R550H 0.05 tolerated(0.09) probably_damaging(1) TCGA-XK-AAIR-01 7 43687157 43687157 G A COA1 Missense_Mutation p.A31V 0.14 tolerated(0.21) benign(0.018) TCGA-XK-AAIR-01 7 6628405 6628405 G A ZDHHC4 Missense_Mutation p.R300H 0.08 tolerated(1) benign(0) TCGA-XK-AAIR-01 7 77973249 77973249 G T MAGI2 Silent p.S418S 0.12 TCGA-XK-AAIR-01 8 55533894 55533894 G A RP1 Missense_Mutation p.R123H 0.06 deleterious(0.01) probably_damaging(0.915) TCGA-XK-AAIV-01 10 108412204 108412204 G A SORCS1 Missense_Mutation p.T804M 0.10 deleterious(0.01) probably_damaging(0.981) TCGA-XK-AAIV-01 10 132891372 132891372 G A TCERG1L 3'UTR 0.08 TCGA-XK-AAIV-01 10 34739266 34739266 C A PARD3 Missense_Mutation p.K231N 0.12 deleterious(0.01) benign(0.06) TCGA-XK-AAIV-01 10 5803309 5803309 A G FAM208B Missense_Mutation p.N2350S 0.16 tolerated(0.09) benign(0.11) TCGA-XK-AAIV-01 11 118133772 118133772 C A MPZL2 Silent p.R33R 0.06 TCGA-XK-AAIV-01 11 123909325 123909325 C T OR10G7 Silent p.P128P 0.09 TCGA-XK-AAIV-01 11 18955602 18955602 C T MRGPRX1 Missense_Mutation p.V244M 0.21 tolerated(0.28) benign(0.075) TCGA-XK-AAIV-01 11 47814391 47814391 G A NUP160 Nonsense_Mutation p.R1133* 0.09 TCGA-XK-AAIV-01 11 55594849 55594849 G A OR5L2 Missense_Mutation p.S52N 0.03 tolerated(0.75) benign(0.066) TCGA-XK-AAIV-01 12 56121076 56121076 G A CD63 Silent p.V38V 0.15 TCGA-XK-AAIV-01 13 102029174 102029174 G A NALCN Missense_Mutation p.S174L 0.25 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIV-01 13 28609787 28609787 C G FLT3 Missense_Mutation p.G481A 0.10 deleterious(0.02) possibly_damaging(0.624) TCGA-XK-AAIV-01 15 25310201 25310201 C - SNORD116-6 RNA 0.14 TCGA-XK-AAIV-01 15 41313214 41313214 C A INO80 Missense_Mutation p.G1053V 0.06 tolerated(0.1) possibly_damaging(0.881) TCGA-XK-AAIV-01 15 41766891 41766891 T A RTF1 Missense_Mutation p.L426Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIV-01 15 42363734 42363734 A G PLA2G4D Missense_Mutation p.I530T 0.10 deleterious(0) possibly_damaging(0.638) TCGA-XK-AAIV-01 16 77769767 77769767 C T NUDT7 Missense_Mutation p.R78C 0.10 tolerated(0.34) benign(0.015) TCGA-XK-AAIV-01 17 11572755 11572755 G A DNAH9 Missense_Mutation p.M999I 0.20 benign(0.001) TCGA-XK-AAIV-01 17 28886632 28886632 G A TBC1D29 5'UTR 0.26 TCGA-XK-AAIV-01 17 38911108 38911108 T C KRT25 Missense_Mutation p.D139G 0.20 deleterious(0.02) probably_damaging(0.964) TCGA-XK-AAIV-01 17 43006319 43006319 C T KIF18B Missense_Mutation p.D531N 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIV-01 19 12155835 12155835 G A ZNF878 Silent p.S127S 0.12 TCGA-XK-AAIV-01 19 41112152 41112152 A C LTBP4 Missense_Mutation p.R336S 0.27 tolerated(0.32) benign(0.011) TCGA-XK-AAIV-01 19 56166456 56166456 C T U2AF2 5'UTR 0.15 TCGA-XK-AAIV-01 1 149900706 149900706 G T MTMR11 3'UTR 0.23 TCGA-XK-AAIV-01 1 153391744 153391744 C A S100A7A Missense_Mutation p.Q89K 0.16 tolerated(0.06) benign(0.136) TCGA-XK-AAIV-01 1 159409753 159409753 C A OR10J1 Missense_Mutation p.P69T 0.21 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIV-01 1 173776622 173776622 A G CENPL Missense_Mutation p.L68P 0.27 deleterious(0) probably_damaging(1) TCGA-XK-AAIV-01 1 197073353 197073353 C A ASPM Missense_Mutation p.L1676F 0.09 tolerated(0.08) possibly_damaging(0.786) TCGA-XK-AAIV-01 20 57415578 57415578 C T RP4-806M20.3 5'Flank 0.10 TCGA-XK-AAIV-01 21 37408549 37408549 C G SETD4 Missense_Mutation p.V397L 0.11 tolerated(0.09) benign(0.086) TCGA-XK-AAIV-01 21 37584273 37584273 A T DOPEY2 Missense_Mutation p.D261V 0.22 tolerated(0.26) possibly_damaging(0.461) TCGA-XK-AAIV-01 22 21989079 21989079 T G CCDC116 Missense_Mutation p.S243A 0.27 tolerated(0.09) possibly_damaging(0.517) TCGA-XK-AAIV-01 2 128528552 128528552 C G WDR33 Missense_Mutation p.A2P 0.26 deleterious_low_confidence(0) benign(0.184) TCGA-XK-AAIV-01 2 226446863 226446863 G A NYAP2 Missense_Mutation p.V244M 0.17 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIV-01 3 57545515 57545515 C A PDE12 Missense_Mutation p.F538L 0.38 tolerated(0.46) benign(0.011) TCGA-XK-AAIV-01 4 79369379 79369379 C A FRAS1 Missense_Mutation p.H2061Q 0.28 benign(0.045) TCGA-XK-AAIV-01 4 79747251 79747251 G A BMP2K Missense_Mutation p.R80Q 0.07 deleterious(0) probably_damaging(1) TCGA-XK-AAIV-01 5 137235222 137235222 C T PKD2L2 Missense_Mutation p.S181F 0.06 deleterious(0.02) possibly_damaging(0.622) TCGA-XK-AAIV-01 5 140801597 140801597 C T PCDHGA11 Missense_Mutation p.T268M 0.08 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-XK-AAIV-01 5 140807473 140807473 G A PCDHGB6 Intron 0.18 TCGA-XK-AAIV-01 5 140954691 140954691 C T DIAPH1 Missense_Mutation p.R495Q 0.08 unknown(0) TCGA-XK-AAIV-01 5 176003117 176003117 C T CDHR2 Silent p.Y375Y 0.26 TCGA-XK-AAIV-01 6 26423271 26423271 C T BTN2A3P RNA 0.13 TCGA-XK-AAIV-01 6 397234 397234 G A IRF4 Missense_Mutation p.G207S 0.14 tolerated(0.3) benign(0.007) TCGA-XK-AAIV-01 6 52996911 52996911 C A GCM1 Missense_Mutation p.R112L 0.12 tolerated(0.5) benign(0.019) TCGA-XK-AAIV-01 6 90718518 90718518 A T BACH2 Missense_Mutation p.S16T 0.15 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIV-01 7 149422555 149422555 C T KRBA1 Nonsense_Mutation p.Q426* 0.15 TCGA-XK-AAIV-01 7 27148061 27148061 C T HOXA3 Missense_Mutation p.V269M 0.10 tolerated(0.12) benign(0.2) TCGA-XK-AAIV-01 7 62752564 62752564 C G ZNF733P RNA 0.10 TCGA-XK-AAIV-01 7 89982131 89982131 A G GTPBP10 Missense_Mutation p.Y12C 0.14 deleterious(0) possibly_damaging(0.832) TCGA-XK-AAIV-01 7 99022540 99022540 C T ATP5J2-PTCD1 Missense_Mutation p.A588T 0.07 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIV-01 8 110563058 110563058 C T EBAG9 Missense_Mutation p.A2V 0.06 deleterious(0.02) probably_damaging(0.934) TCGA-XK-AAIV-01 8 63659613 63659613 C T NKAIN3 Silent p.Y132Y 0.13 TCGA-XK-AAIV-01 8 67925324 67925324 C T PPP1R42 Missense_Mutation p.G102R 0.22 deleterious(0) probably_damaging(0.913) TCGA-XK-AAIV-01 8 95403998 95403998 G A RAD54B Nonsense_Mutation p.R550* 0.40 TCGA-XK-AAIV-01 9 84608365 84608365 G A SPATA31D1 Missense_Mutation p.V994I 0.10 tolerated(0.1) benign(0) TCGA-XK-AAIW-01 10 100144810 100144810 G A PYROXD2 Silent p.C523C 0.30 TCGA-XK-AAIW-01 10 101162417 101162417 C T GOT1 Missense_Mutation p.R341Q 0.44 tolerated(0.14) benign(0.011) TCGA-XK-AAIW-01 10 101486888 101486888 G A COX15 Missense_Mutation p.T140I 0.21 tolerated(0.1) benign(0.021) TCGA-XK-AAIW-01 10 101499521 101499521 G A CUTC Missense_Mutation p.S63N 0.44 deleterious(0) possibly_damaging(0.706) TCGA-XK-AAIW-01 10 101507076 101507076 C T CUTC Missense_Mutation p.R168C 0.29 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 10 101636947 101636947 G A DNMBP Silent p.Y1565Y 0.36 TCGA-XK-AAIW-01 10 101636968 101636968 C T DNMBP Silent p.E1558E 0.39 TCGA-XK-AAIW-01 10 101639889 101639889 C T DNMBP Silent p.P1409P 0.15 TCGA-XK-AAIW-01 10 101731785 101731785 C T DNMBP Missense_Mutation p.A33T 0.36 tolerated(0.1) benign(0.074) TCGA-XK-AAIW-01 10 102056787 102056787 G A PKD2L1 Missense_Mutation p.L379F 0.46 tolerated(0.16) benign(0.032) TCGA-XK-AAIW-01 10 102116398 102116398 C T SCD Nonsense_Mutation p.R253* 0.37 TCGA-XK-AAIW-01 10 102283738 102283738 C T NDUFB8 Intron 0.40 TCGA-XK-AAIW-01 10 102683848 102683848 C T FAM178A Missense_Mutation p.R364C 0.42 deleterious(0) probably_damaging(0.927) TCGA-XK-AAIW-01 10 102709874 102709874 T C FAM178A Silent p.S1054S 0.46 TCGA-XK-AAIW-01 10 102732608 102732608 C T SEMA4G 5'UTR 0.42 TCGA-XK-AAIW-01 10 102738178 102738178 G A MRPL43 3'Flank 0.19 TCGA-XK-AAIW-01 10 102738801 102738801 G A MRPL43 3'Flank 0.30 TCGA-XK-AAIW-01 10 102740674 102740674 A G SEMA4G Silent p.R521R 0.35 TCGA-XK-AAIW-01 10 102894092 102894092 G A TLX1 Silent p.A243A 0.50 TCGA-XK-AAIW-01 10 103221813 103221813 C T BTRC Nonsense_Mutation p.Q78* 0.41 TCGA-XK-AAIW-01 10 103292116 103292116 C T BTRC Missense_Mutation p.T302I 0.46 deleterious(0.03) benign(0.099) TCGA-XK-AAIW-01 10 103541551 103541551 T C NPM3 Missense_Mutation p.E160G 0.12 deleterious(0.03) benign(0.007) TCGA-XK-AAIW-01 10 103900822 103900822 C T PPRC1 Missense_Mutation p.P853S 0.45 tolerated_low_confidence(0.06) benign(0.006) TCGA-XK-AAIW-01 10 103908197 103908197 C T PPRC1 Missense_Mutation p.S1490L 0.41 deleterious_low_confidence(0) benign(0.32) TCGA-XK-AAIW-01 10 104128502 104128502 C T GBF1 Silent p.C961C 0.32 TCGA-XK-AAIW-01 10 104140354 104140354 C T GBF1 Missense_Mutation p.P1694L 0.38 tolerated(0.33) benign(0.001) TCGA-XK-AAIW-01 10 104235671 104235671 G A TMEM180 Missense_Mutation p.R495H 0.44 deleterious(0.03) benign(0.008) TCGA-XK-AAIW-01 10 104242791 104242791 G T ACTR1A Missense_Mutation p.L243M 0.37 deleterious(0.05) probably_damaging(0.997) TCGA-XK-AAIW-01 10 104416970 104416970 G A TRIM8 Silent p.P505P 0.37 TCGA-XK-AAIW-01 10 104595136 104595136 A C CYP17A1 Missense_Mutation p.I104S 0.43 deleterious(0) possibly_damaging(0.902) TCGA-XK-AAIW-01 10 104678884 104678884 G A CNNM2 Missense_Mutation p.G216D 0.43 tolerated(0.52) benign(0.034) TCGA-XK-AAIW-01 10 104836887 104836887 G C CNNM2 Missense_Mutation p.V860L 0.38 tolerated(0.72) benign(0.005) TCGA-XK-AAIW-01 10 104850752 104850752 G A NT5C2 Missense_Mutation p.H405Y 0.13 tolerated(0.09) possibly_damaging(0.757) TCGA-XK-AAIW-01 10 105006016 105006016 C T RPEL1 Missense_Mutation p.A88V 0.46 tolerated(0.21) probably_damaging(1) TCGA-XK-AAIW-01 10 105185201 105185201 G A PDCD11 Missense_Mutation p.G1075D 0.49 deleterious(0.02) probably_damaging(0.914) TCGA-XK-AAIW-01 10 105201637 105201637 G A PDCD11 Missense_Mutation p.A1538T 0.19 tolerated(0.58) benign(0.001) TCGA-XK-AAIW-01 10 105203743 105203743 C T PDCD11 Silent p.G1732G 0.09 TCGA-XK-AAIW-01 10 105209329 105209329 G A CALHM2 Missense_Mutation p.R124C 0.38 tolerated(0.09) benign(0.287) TCGA-XK-AAIW-01 10 105331341 105331341 G A NEURL1 Silent p.S137S 0.47 TCGA-XK-AAIW-01 10 105830199 105830199 C T COL17A1 Missense_Mutation p.A198T 0.50 unknown(0) TCGA-XK-AAIW-01 10 105889893 105889893 G A WDR96 3'UTR 0.35 TCGA-XK-AAIW-01 10 105923981 105923981 T C WDR96 Silent p.A1039A 0.15 TCGA-XK-AAIW-01 10 105945830 105945830 G A WDR96 Nonsense_Mutation p.Q638* 0.15 TCGA-XK-AAIW-01 10 106075068 106075068 C T ITPRIP Missense_Mutation p.A248T 0.45 tolerated(0.29) benign(0.047) TCGA-XK-AAIW-01 10 1065405 1065405 C T IDI2 3'UTR 0.38 TCGA-XK-AAIW-01 10 1065665 1065665 A G IDI2 Missense_Mutation p.V159A 0.14 deleterious(0) benign(0.37) TCGA-XK-AAIW-01 10 1068717 1068717 T C IDI2 Splice_Site p.X48_splice 0.24 TCGA-XK-AAIW-01 10 106976777 106976777 C T SORCS3 Silent p.D877D 0.41 TCGA-XK-AAIW-01 10 108389096 108389096 C T SORCS1 Silent p.A842A 0.10 TCGA-XK-AAIW-01 10 108432670 108432670 G A SORCS1 Missense_Mutation p.R672W 0.20 deleterious(0.01) benign(0.071) TCGA-XK-AAIW-01 10 112038952 112038952 G A MXI1 Missense_Mutation p.R151H 0.42 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 10 11207596 11207596 C T CELF2 Silent p.Y74Y 0.37 TCGA-XK-AAIW-01 10 114136074 114136074 G A ACSL5 Missense_Mutation p.A3T 0.37 tolerated_low_confidence(1) possibly_damaging(0.695) TCGA-XK-AAIW-01 10 114182104 114182104 G A ACSL5 Missense_Mutation p.V556M 0.47 deleterious(0.01) probably_damaging(0.961) TCGA-XK-AAIW-01 10 114903764 114903764 G A TCF7L2 Silent p.P256P 0.38 TCGA-XK-AAIW-01 10 115366002 115366002 A G NRAP Missense_Mutation p.Y1248H 0.36 deleterious(0) possibly_damaging(0.905) TCGA-XK-AAIW-01 10 115391684 115391684 C T NRAP Missense_Mutation p.G558R 0.40 deleterious(0.03) probably_damaging(1) TCGA-XK-AAIW-01 10 115982440 115982440 C T TDRD1 Silent p.D995D 0.38 TCGA-XK-AAIW-01 10 115987859 115987859 T C TDRD1 Silent p.F1171F 0.33 TCGA-XK-AAIW-01 10 116046009 116046009 G A VWA2 Missense_Mutation p.A437T 0.47 tolerated(0.37) benign(0.02) TCGA-XK-AAIW-01 10 116049332 116049332 G A VWA2 3'UTR 0.45 TCGA-XK-AAIW-01 10 116207736 116207736 C T ABLIM1 Silent p.K546K 0.24 TCGA-XK-AAIW-01 10 116307451 116307451 C T ABLIM1 Missense_Mutation p.C253Y 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 116621019 116621019 G T FAM160B1 Missense_Mutation p.Q706H 0.28 tolerated(0.13) benign(0.092) TCGA-XK-AAIW-01 10 117061448 117061448 G A ATRNL1 Missense_Mutation p.E905K 0.37 deleterious(0.01) possibly_damaging(0.876) TCGA-XK-AAIW-01 10 1175351 1175351 C T WDR37 3'UTR 0.32 TCGA-XK-AAIW-01 10 118030617 118030617 C T GFRA1 Silent p.L17L 0.44 TCGA-XK-AAIW-01 10 118100254 118100255 - T CCDC172 Frame_Shift_Ins p.E61* 0.30 TCGA-XK-AAIW-01 10 118228729 118228729 C T PNLIPRP3 Silent p.C320C 0.12 TCGA-XK-AAIW-01 10 118231318 118231318 G A PNLIPRP3 Missense_Mutation p.E367K 0.08 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 10 118313343 118313343 C T PNLIP Silent p.R188R 0.42 TCGA-XK-AAIW-01 10 118423536 118423536 G A C10orf82 3'UTR 0.44 TCGA-XK-AAIW-01 10 118440697 118440697 C T HSPA12A Silent p.P331P 0.43 TCGA-XK-AAIW-01 10 118440767 118440767 C T HSPA12A Missense_Mutation p.G308D 0.41 deleterious(0) possibly_damaging(0.883) TCGA-XK-AAIW-01 10 118466749 118466749 C T HSPA12A Missense_Mutation p.D30N 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.757) TCGA-XK-AAIW-01 10 118738784 118738784 G A KIAA1598 Nonsense_Mutation p.Q32* 0.36 TCGA-XK-AAIW-01 10 118891815 118891815 T C VAX1 3'Flank 0.50 TCGA-XK-AAIW-01 10 119013558 119013558 G T SLC18A2 Splice_Site p.X175_splice 0.45 TCGA-XK-AAIW-01 10 119029690 119029690 G A SLC18A2 Missense_Mutation p.G432E 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 10 119305160 119305160 G A EMX2 Missense_Mutation p.E142K 0.26 tolerated(0.09) benign(0.29) TCGA-XK-AAIW-01 10 119305250 119305250 G A EMX2 Missense_Mutation p.A172T 0.43 deleterious(0.01) probably_damaging(0.937) TCGA-XK-AAIW-01 10 119800026 119800026 T A RAB11FIP2 Missense_Mutation p.E135V 0.27 deleterious(0) possibly_damaging(0.479) TCGA-XK-AAIW-01 10 12001315 12001315 G A UPF2 Missense_Mutation p.A742V 0.35 deleterious(0.05) benign(0.19) TCGA-XK-AAIW-01 10 12077380 12077381 - T UPF2 Frame_Shift_Ins p.D15Rfs*13 0.26 TCGA-XK-AAIW-01 10 12139743 12139743 G A DHTKD1 Silent p.T473T 0.38 TCGA-XK-AAIW-01 10 121580392 121580392 C A INPP5F Missense_Mutation p.L641M 0.44 deleterious(0.01) probably_damaging(0.934) TCGA-XK-AAIW-01 10 121586586 121586586 C T INPP5F Missense_Mutation p.A898V 0.29 tolerated(0.14) benign(0.004) TCGA-XK-AAIW-01 10 122280506 122280506 G A PPAPDC1A Missense_Mutation p.R115H 0.12 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 122280551 122280551 G A PPAPDC1A Missense_Mutation p.G130D 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 123310804 123310804 C A FGFR2 Missense_Mutation p.K208N 0.33 deleterious(0.03) benign(0.341) TCGA-XK-AAIW-01 10 123600629 123600629 C T ATE1 Silent p.S375S 0.41 TCGA-XK-AAIW-01 10 123844901 123844901 G A TACC2 Silent p.S962S 0.14 TCGA-XK-AAIW-01 10 124008246 124008246 C T TACC2 Silent p.S2827S 0.33 TCGA-XK-AAIW-01 10 124157456 124157456 G A PLEKHA1 Missense_Mutation p.R55H 0.10 tolerated(0.33) possibly_damaging(0.756) TCGA-XK-AAIW-01 10 124380768 124380768 G A DMBT1 Missense_Mutation p.G1698D 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 124390529 124390529 G A DMBT1 Silent p.G1897G 0.11 TCGA-XK-AAIW-01 10 124402700 124402700 G A DMBT1 Missense_Mutation p.R2343Q 0.09 tolerated(0.06) benign(0.051) TCGA-XK-AAIW-01 10 124457684 124457684 G A C10orf120 Silent p.R191R 0.25 TCGA-XK-AAIW-01 10 124813214 124813214 C T ACADSB Missense_Mutation p.T411M 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-XK-AAIW-01 10 125426420 125426420 G A GPR26 Missense_Mutation p.R166H 0.41 tolerated(0.34) benign(0.132) TCGA-XK-AAIW-01 10 125506535 125506535 T C CPXM2 Splice_Site p.X673_splice 0.09 TCGA-XK-AAIW-01 10 125526622 125526622 C T CPXM2 Missense_Mutation p.G449E 0.40 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 10 125528099 125528099 C T CPXM2 Silent p.T414T 0.38 TCGA-XK-AAIW-01 10 125528119 125528119 C T CPXM2 Missense_Mutation p.V408I 0.38 tolerated(0.39) benign(0.016) TCGA-XK-AAIW-01 10 125801957 125801957 A G CHST15 Missense_Mutation p.V298A 0.53 deleterious(0.04) benign(0.013) TCGA-XK-AAIW-01 10 126355965 126355965 C T FAM53B Intron 0.19 TCGA-XK-AAIW-01 10 126463302 126463302 G A METTL10 Missense_Mutation p.A114V 0.45 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 10 127542804 127542804 A G DHX32 Intron 0.53 TCGA-XK-AAIW-01 10 127730740 127730740 C T ADAM12 Intron 0.31 TCGA-XK-AAIW-01 10 1279710 1279710 A G ADARB2 Missense_Mutation p.L480P 0.40 tolerated(0.2) benign(0.075) TCGA-XK-AAIW-01 10 129160405 129160405 C T DOCK1 Missense_Mutation p.R1100C 0.41 deleterious(0) benign(0.041) TCGA-XK-AAIW-01 10 129202690 129202690 G A DOCK1 Silent p.L1352L 0.31 TCGA-XK-AAIW-01 10 129231687 129231687 C T DOCK1 Silent p.S1664S 0.30 TCGA-XK-AAIW-01 10 12940631 12940631 C T CCDC3 Missense_Mutation p.V200I 0.29 deleterious_low_confidence(0.01) benign(0.017) TCGA-XK-AAIW-01 10 129864363 129864363 G A PTPRE Missense_Mutation p.D250N 0.47 tolerated(0.17) possibly_damaging(0.858) TCGA-XK-AAIW-01 10 129874955 129874955 C T PTPRE Missense_Mutation p.A563V 0.35 tolerated(0.15) possibly_damaging(0.513) TCGA-XK-AAIW-01 10 129877927 129877927 C T PTPRE Nonsense_Mutation p.R666* 0.35 TCGA-XK-AAIW-01 10 129899719 129899719 C T MKI67 Missense_Mutation p.A3170T 0.44 deleterious(0) benign(0.401) TCGA-XK-AAIW-01 10 133769188 133769188 C T PPP2R2D Silent p.S330S 0.44 TCGA-XK-AAIW-01 10 133930934 133930934 C T JAKMIP3 Silent p.G163G 0.30 TCGA-XK-AAIW-01 10 134218982 134218982 G A PWWP2B Silent p.A326A 0.59 TCGA-XK-AAIW-01 10 134591246 134591246 G A INPP5A Missense_Mutation p.R350H 0.50 deleterious(0) probably_damaging(0.954) TCGA-XK-AAIW-01 10 134598388 134598388 C T NKX6-2 3'UTR 0.27 TCGA-XK-AAIW-01 10 134896280 134896280 C T GPR123-AS1 3'Flank 0.27 TCGA-XK-AAIW-01 10 135098974 135098974 C T TUBGCP2 Silent p.S655S 0.55 TCGA-XK-AAIW-01 10 135116328 135116328 C T TUBGCP2 Missense_Mutation p.V40I 0.27 tolerated(0.33) benign(0.138) TCGA-XK-AAIW-01 10 135204901 135204901 C T PAOX Missense_Mutation p.A493V 0.28 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 13523090 13523090 A C BEND7 Missense_Mutation p.F239C 0.21 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-XK-AAIW-01 10 135352437 135352437 G A CYP2E1 Missense_Mutation p.R484H 0.37 tolerated(0.8) benign(0.001) TCGA-XK-AAIW-01 10 13743457 13743457 C T FRMD4A Silent p.T286T 0.31 TCGA-XK-AAIW-01 10 13838573 13838573 C A FRMD4A Missense_Mutation p.W74C 0.15 deleterious(0) probably_damaging(0.961) TCGA-XK-AAIW-01 10 14563135 14563135 G A FAM107B 3'UTR 0.22 TCGA-XK-AAIW-01 10 14950313 14950313 A G DCLRE1C 3'UTR 0.33 TCGA-XK-AAIW-01 10 14950321 14950321 G A DCLRE1C 3'UTR 0.44 TCGA-XK-AAIW-01 10 15255001 15255001 G A FAM171A1 Silent p.D862D 0.25 TCGA-XK-AAIW-01 10 15256021 15256021 C T FAM171A1 Silent p.A522A 0.31 TCGA-XK-AAIW-01 10 15256156 15256156 G A FAM171A1 Silent p.Y477Y 0.16 TCGA-XK-AAIW-01 10 15714696 15714696 C A ITGA8 Missense_Mutation p.K243N 0.44 tolerated(0.29) probably_damaging(0.963) TCGA-XK-AAIW-01 10 16635377 16635377 G A RSU1 3'UTR 0.47 TCGA-XK-AAIW-01 10 16932470 16932470 G A CUBN Silent p.N2885N 0.46 TCGA-XK-AAIW-01 10 16975190 16975190 G A CUBN Missense_Mutation p.T2007M 0.30 tolerated(0.24) benign(0.105) TCGA-XK-AAIW-01 10 16979632 16979632 G A CUBN Missense_Mutation p.A1962V 0.40 deleterious(0.04) probably_damaging(0.967) TCGA-XK-AAIW-01 10 17210864 17210864 C T TRDMT1 Missense_Mutation p.S76N 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 17216557 17216557 G A TRDMT1 Missense_Mutation p.T56M 0.37 deleterious(0.01) possibly_damaging(0.892) TCGA-XK-AAIW-01 10 17271519 17271519 C T VIM Missense_Mutation p.T33M 0.36 tolerated(0.23) benign(0.239) TCGA-XK-AAIW-01 10 17363216 17363216 C T ST8SIA6 Silent p.T286T 0.40 TCGA-XK-AAIW-01 10 18254429 18254429 G A SLC39A12 Silent p.T187T 0.33 TCGA-XK-AAIW-01 10 18439868 18439868 G A CACNB2 Silent p.T59T 0.27 TCGA-XK-AAIW-01 10 18962969 18962969 T C ARL5B Silent p.C132C 0.32 TCGA-XK-AAIW-01 10 21120417 21120417 G A NEBL Silent p.S515S 0.25 TCGA-XK-AAIW-01 10 21139370 21139370 G A NEBL Missense_Mutation p.T357I 0.25 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 10 21250654 21250654 T C NEBL Missense_Mutation p.T68A 0.41 tolerated(0.67) benign(0.005) TCGA-XK-AAIW-01 10 21804455 21804455 G A SKIDA1 Missense_Mutation p.P766L 0.41 tolerated(0.11) unknown(0) TCGA-XK-AAIW-01 10 21804814 21804814 C T SKIDA1 Silent p.T646T 0.40 TCGA-XK-AAIW-01 10 21959520 21959520 C T MLLT10 Missense_Mutation p.S313L 0.35 deleterious(0.04) benign(0.046) TCGA-XK-AAIW-01 10 23292175 23292175 G A ARMC3 Silent p.G521G 0.34 TCGA-XK-AAIW-01 10 23482762 23482762 A G PTF1A Missense_Mutation p.D305G 0.25 deleterious(0) unknown(0) TCGA-XK-AAIW-01 10 24669871 24669871 C T KIAA1217 Missense_Mutation p.T143M 0.42 deleterious(0) possibly_damaging(0.832) TCGA-XK-AAIW-01 10 24889778 24889778 T - ARHGAP21 Frame_Shift_Del p.R977Efs*19 0.10 TCGA-XK-AAIW-01 10 25312242 25312242 G A THNSL1 Silent p.Q30Q 0.48 TCGA-XK-AAIW-01 10 25886785 25886785 C T GPR158 Missense_Mutation p.R744W 0.40 deleterious(0) possibly_damaging(0.896) TCGA-XK-AAIW-01 10 26463214 26463214 C T MYO3A Nonsense_Mutation p.Q1341* 0.49 TCGA-XK-AAIW-01 10 26562621 26562621 C T GAD2 Silent p.G383G 0.35 TCGA-XK-AAIW-01 10 26589804 26589804 C T GAD2 Missense_Mutation p.R558C 0.21 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 26856412 26856412 T A APBB1IP Missense_Mutation p.S666T 0.60 deleterious_low_confidence(0) benign(0.153) TCGA-XK-AAIW-01 10 27048050 27048050 G A ABI1 Missense_Mutation p.T340I 0.48 deleterious(0.04) benign(0.424) TCGA-XK-AAIW-01 10 27326939 27326939 G A ANKRD26 Missense_Mutation p.T807M 0.46 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 10 27329038 27329038 T - ANKRD26 Frame_Shift_Del p.N744Ifs*8 0.49 TCGA-XK-AAIW-01 10 27349345 27349345 G T ANKRD26 Missense_Mutation p.P498H 0.31 deleterious(0) possibly_damaging(0.855) TCGA-XK-AAIW-01 10 27368073 27368073 C T ANKRD26 Missense_Mutation p.G253D 0.36 tolerated(0.37) benign(0.023) TCGA-XK-AAIW-01 10 27411890 27411890 G A YME1L1 Missense_Mutation p.A429V 0.41 tolerated(0.1) possibly_damaging(0.882) TCGA-XK-AAIW-01 10 27423040 27423040 G A YME1L1 Nonsense_Mutation p.R292* 0.50 TCGA-XK-AAIW-01 10 27538280 27538280 A G RP11-85G18.6 Intron 0.40 TCGA-XK-AAIW-01 10 27964290 27964290 G A MKX Silent p.N309N 0.37 TCGA-XK-AAIW-01 10 28023550 28023550 G A MKX Missense_Mutation p.R225C 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 10 28229592 28229592 C T ARMC4 Missense_Mutation p.R629H 0.37 deleterious(0.02) possibly_damaging(0.484) TCGA-XK-AAIW-01 10 28358764 28358764 G A MPP7 Silent p.L381L 0.24 TCGA-XK-AAIW-01 10 29600104 29600104 G T LYZL1 3'UTR 0.50 TCGA-XK-AAIW-01 10 29769363 29769363 G A SVIL Intron 0.23 TCGA-XK-AAIW-01 10 29775373 29775373 G T SVIL Missense_Mutation p.F1533L 0.44 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 10 29819560 29819560 G A SVIL Silent p.V694V 0.09 TCGA-XK-AAIW-01 10 30316868 30316868 G A KIAA1462 Missense_Mutation p.P737S 0.30 tolerated(0.19) benign(0.017) TCGA-XK-AAIW-01 10 30317153 30317153 C T KIAA1462 Missense_Mutation p.G642S 0.31 tolerated(0.07) benign(0.047) TCGA-XK-AAIW-01 10 30915180 30915180 G A LYZL2 Missense_Mutation p.A97V 0.24 tolerated(0.08) benign(0.099) TCGA-XK-AAIW-01 10 31139109 31139109 C T ZNF438 Missense_Mutation p.M75I 0.08 tolerated(0.11) benign(0.006) TCGA-XK-AAIW-01 10 3124650 3124650 C T PFKP Silent p.Y61Y 0.28 TCGA-XK-AAIW-01 10 3146002 3146002 C T PFKP Silent p.Y162Y 0.30 TCGA-XK-AAIW-01 10 3150938 3150938 G A PFKP Missense_Mutation p.G306R 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 31810746 31810746 C T ZEB1 Missense_Mutation p.A829V 0.47 deleterious(0.03) probably_damaging(0.995) TCGA-XK-AAIW-01 10 31815671 31815671 C T ZEB1 Nonsense_Mutation p.R953* 0.50 TCGA-XK-AAIW-01 10 3208440 3208440 C T PITRM1 Silent p.T133T 0.28 TCGA-XK-AAIW-01 10 32096640 32096640 C A ARHGAP12 Missense_Mutation p.Q829H 0.50 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 10 32576142 32576142 G A EPC1 Missense_Mutation p.P346S 0.51 deleterious(0.03) benign(0.301) TCGA-XK-AAIW-01 10 33018260 33018260 C T C10ORF68 Missense_Mutation p.T234M 0.33 deleterious(0.02) benign(0.004) TCGA-XK-AAIW-01 10 33491899 33491899 G T NRP1 Missense_Mutation p.P595H 0.31 deleterious(0) possibly_damaging(0.823) TCGA-XK-AAIW-01 10 34671822 34671822 G A PARD3 Missense_Mutation p.R349C 0.45 deleterious(0.01) benign(0.008) TCGA-XK-AAIW-01 10 35495960 35495960 C T CREM Silent p.L246L 0.38 TCGA-XK-AAIW-01 10 37430806 37430806 G A ANKRD30A Silent p.E271E 0.56 TCGA-XK-AAIW-01 10 38406981 38406981 G A ZNF37A Missense_Mutation p.C301Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 10 43078550 43078550 A G ZNF33B RNA 0.39 TCGA-XK-AAIW-01 10 43088557 43088557 C T ZNF33B Missense_Mutation p.C614Y 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 43319071 43319071 C T BMS1 Nonsense_Mutation p.R1099* 0.29 TCGA-XK-AAIW-01 10 43325850 43325850 C T BMS1 Missense_Mutation p.R1200C 0.40 deleterious(0) probably_damaging(0.943) TCGA-XK-AAIW-01 10 43597841 43597841 C T RET Missense_Mutation p.T130I 0.45 tolerated_low_confidence(0.18) benign(0.014) TCGA-XK-AAIW-01 10 43597968 43597968 C A RET Silent p.P172P 0.32 TCGA-XK-AAIW-01 10 43622199 43622199 C T RET Intron 0.40 TCGA-XK-AAIW-01 10 43971194 43971194 C A ZNF487 5'UTR 0.12 TCGA-XK-AAIW-01 10 44104711 44104711 T C ZNF485 Missense_Mutation p.S54P 0.44 tolerated(0.31) benign(0.03) TCGA-XK-AAIW-01 10 44112834 44112834 G A ZNF485 3'UTR 0.33 TCGA-XK-AAIW-01 10 45799447 45799447 C T OR13A1 Missense_Mutation p.A142T 0.36 deleterious(0.03) benign(0.006) TCGA-XK-AAIW-01 10 45935962 45935962 C T ALOX5 Missense_Mutation p.R356C 0.43 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 10 45939258 45939258 C T ALOX5 Silent p.A552A 0.27 TCGA-XK-AAIW-01 10 46159192 46159192 T C ZFAND4 5'UTR 0.61 TCGA-XK-AAIW-01 10 46233431 46233431 C T FAM21C Missense_Mutation p.R98C 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 46321476 46321476 C T AGAP4 Missense_Mutation p.V627I 0.34 tolerated(0.14) benign(0.013) TCGA-XK-AAIW-01 10 46967493 46967493 C T SYT15 Missense_Mutation p.R195H 0.13 tolerated(0.1) benign(0.075) TCGA-XK-AAIW-01 10 46969394 46969394 C T SYT15 Missense_Mutation p.G23R 0.18 tolerated(0.06) probably_damaging(0.956) TCGA-XK-AAIW-01 10 47086845 47086845 G A NPY4R Missense_Mutation p.S21N 0.23 deleterious(0.04) possibly_damaging(0.575) TCGA-XK-AAIW-01 10 47087266 47087266 G A NPY4R Silent p.V161V 0.17 TCGA-XK-AAIW-01 10 4875568 4875568 C A AKR1E2 Silent p.S78S 0.40 TCGA-XK-AAIW-01 10 5008275 5008275 T G AKR1C1 Splice_Site p.X84_splice 0.43 TCGA-XK-AAIW-01 10 50532618 50532618 G A C10orf71 Silent p.V676V 0.37 TCGA-XK-AAIW-01 10 50740993 50740993 G A ERCC6-PGBD3 Silent p.I6I 0.34 TCGA-XK-AAIW-01 10 50820020 50820020 C T SLC18A3 Missense_Mutation p.R412C 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 50857557 50857557 G A CHAT Silent p.T462T 0.29 TCGA-XK-AAIW-01 10 50872967 50872967 G A CHAT Missense_Mutation p.A708T 0.45 tolerated(0.06) possibly_damaging(0.705) TCGA-XK-AAIW-01 10 50955174 50955174 C T OGDHL Silent p.S356S 0.30 TCGA-XK-AAIW-01 10 51748470 51748470 C T AGAP6 5'UTR 0.38 TCGA-XK-AAIW-01 10 5204939 5204939 G A AKR1CL1 Silent p.D46D 0.42 TCGA-XK-AAIW-01 10 52573657 52573657 G T A1CF Missense_Mutation p.P436H 0.14 tolerated(0.11) benign(0.018) TCGA-XK-AAIW-01 10 52587968 52587968 T C A1CF Missense_Mutation p.K239R 0.07 tolerated(0.17) probably_damaging(0.998) TCGA-XK-AAIW-01 10 52595924 52595924 C T A1CF Missense_Mutation p.A180T 0.37 deleterious(0.04) probably_damaging(0.996) TCGA-XK-AAIW-01 10 53457601 53457601 G T CSTF2T Missense_Mutation p.T570N 0.35 deleterious(0) unknown(0) TCGA-XK-AAIW-01 10 53457635 53457635 G A CSTF2T Missense_Mutation p.P559S 0.24 deleterious_low_confidence(0.04) unknown(0) TCGA-XK-AAIW-01 10 53457674 53457674 C A CSTF2T Nonsense_Mutation p.G546* 0.36 TCGA-XK-AAIW-01 10 53459282 53459282 C T CSTF2T Missense_Mutation p.A10T 0.35 deleterious(0.01) possibly_damaging(0.896) TCGA-XK-AAIW-01 10 54074735 54074735 G A DKK1 Missense_Mutation p.S99N 0.28 tolerated(0.56) benign(0.059) TCGA-XK-AAIW-01 10 5436177 5436177 G A TUBAL3 Missense_Mutation p.A215V 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XK-AAIW-01 10 55566511 55566511 G A PCDH15 Missense_Mutation p.A1625V 0.40 tolerated_low_confidence(0.2) benign(0.041) TCGA-XK-AAIW-01 10 55569172 55569172 G A PCDH15 Silent p.F480F 0.41 TCGA-XK-AAIW-01 10 55591228 55591228 C T PCDH15 Missense_Mutation p.R1350H 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 10 5567358 5567358 G A CALML3 Missense_Mutation p.A104T 0.29 deleterious_low_confidence(0.04) benign(0.051) TCGA-XK-AAIW-01 10 55892669 55892669 G A PCDH15 Missense_Mutation p.A628V 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 10 55955612 55955612 G T PCDH15 Missense_Mutation p.A379D 0.34 deleterious(0) probably_damaging(0.973) TCGA-XK-AAIW-01 10 58118111 58118111 G A ZWINT Intron 0.63 TCGA-XK-AAIW-01 10 58119553 58119553 G A ZWINT Silent p.H106H 0.38 TCGA-XK-AAIW-01 10 58119813 58119813 C A ZWINT Missense_Mutation p.K74N 0.34 deleterious(0.03) benign(0.056) TCGA-XK-AAIW-01 10 5955734 5955734 C T FBXO18 Silent p.C463C 0.46 TCGA-XK-AAIW-01 10 5960417 5960417 C T FBXO18 Silent p.H743H 0.47 TCGA-XK-AAIW-01 10 61844449 61844449 G A ANK3 Nonsense_Mutation p.R1329* 0.45 TCGA-XK-AAIW-01 10 61868695 61868695 G A ANK3 Silent p.C1022C 0.36 TCGA-XK-AAIW-01 10 62544621 62544621 T C CDK1 Splice_Site p.X65_splice 0.38 TCGA-XK-AAIW-01 10 62648833 62648833 T C RHOBTB1 Missense_Mutation p.D198G 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 63170404 63170404 G T TMEM26 Silent p.V261V 0.48 TCGA-XK-AAIW-01 10 63661997 63661997 G A ARID5B Missense_Mutation p.R34K 0.30 tolerated(0.1) possibly_damaging(0.773) TCGA-XK-AAIW-01 10 64239758 64239758 C T ZNF365 Intron 0.50 TCGA-XK-AAIW-01 10 64415277 64415277 T C ZNF365 Intron 0.49 TCGA-XK-AAIW-01 10 64952885 64952885 A G JMJD1C Silent p.S1963S 0.36 TCGA-XK-AAIW-01 10 64973446 64973446 C T JMJD1C Silent p.A827A 0.33 TCGA-XK-AAIW-01 10 6527171 6527171 G A PRKCQ Missense_Mutation p.P321S 0.39 tolerated(0.43) benign(0.04) TCGA-XK-AAIW-01 10 65379471 65379471 C T REEP3 Missense_Mutation p.P208S 0.33 tolerated(0.76) benign(0.001) TCGA-XK-AAIW-01 10 65380639 65380639 C T REEP3 3'UTR 0.20 TCGA-XK-AAIW-01 10 6540483 6540483 G T PRKCQ Missense_Mutation p.F139L 0.30 tolerated(0.73) benign(0) TCGA-XK-AAIW-01 10 68687414 68687414 C T LRRTM3 Missense_Mutation p.T247I 0.53 deleterious(0) possibly_damaging(0.803) TCGA-XK-AAIW-01 10 68687898 68687898 C T LRRTM3 Silent p.T408T 0.27 TCGA-XK-AAIW-01 10 68940084 68940084 G A CTNNA3 Silent p.Y346Y 0.41 TCGA-XK-AAIW-01 10 68940102 68940102 C T CTNNA3 Silent p.Q340Q 0.42 TCGA-XK-AAIW-01 10 69676052 69676052 G A SIRT1 Missense_Mutation p.R649H 0.41 tolerated(0.1) benign(0.041) TCGA-XK-AAIW-01 10 69957223 69957223 G A MYPN Silent p.R1091R 0.38 TCGA-XK-AAIW-01 10 70056760 70056760 G A PBLD Intron 0.48 TCGA-XK-AAIW-01 10 70097777 70097777 G A HNRNPH3 Intron 0.44 TCGA-XK-AAIW-01 10 70101422 70101422 G A HNRNPH3 Missense_Mutation p.G286R 0.47 deleterious(0.01) unknown(0) TCGA-XK-AAIW-01 10 70182590 70182590 A G DNA2 Missense_Mutation p.F842L 0.17 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 10 70229775 70229775 G C DNA2 Missense_Mutation p.L160V 0.38 tolerated(0.3) benign(0.239) TCGA-XK-AAIW-01 10 70276515 70276515 C T SLC25A16 Silent p.K72K 0.36 TCGA-XK-AAIW-01 10 70332152 70332153 - A TET1 Frame_Shift_Ins p.K23Efs*37 0.40 TCGA-XK-AAIW-01 10 70545919 70545919 C T CCAR1 Nonsense_Mutation p.R893* 0.30 TCGA-XK-AAIW-01 10 70917884 70917884 C A VPS26A Silent p.T156T 0.37 TCGA-XK-AAIW-01 10 71002999 71002999 C T HKDC1 Silent p.D251D 0.44 TCGA-XK-AAIW-01 10 71055391 71055391 T C HK1 Silent p.A10A 0.09 TCGA-XK-AAIW-01 10 71151991 71151991 G A HK1 Missense_Mutation p.G720R 0.44 deleterious(0.01) benign(0.374) TCGA-XK-AAIW-01 10 71158559 71158559 G A HK1 Missense_Mutation p.G866R 0.39 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 10 71174882 71174882 C T TACR2 Missense_Mutation p.V136I 0.29 tolerated(1) benign(0.025) TCGA-XK-AAIW-01 10 71332424 71332424 G A NEUROG3 Missense_Mutation p.R126C 0.19 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 71874699 71874699 C T AIFM2 Missense_Mutation p.R316Q 0.27 tolerated(0.07) benign(0.007) TCGA-XK-AAIW-01 10 72136351 72136351 G A LRRC20 Intron 0.31 TCGA-XK-AAIW-01 10 72179743 72179743 C T EIF4EBP2 Silent p.C73C 0.46 TCGA-XK-AAIW-01 10 72192802 72192802 A G NODAL Missense_Mutation p.C312R 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 10 72358201 72358201 C A PRF1 Missense_Mutation p.G426C 0.55 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 10 7239528 7239528 G A SFMBT2 Silent p.C560C 0.08 TCGA-XK-AAIW-01 10 72489064 72489064 C T ADAMTS14 Silent p.Y295Y 0.31 TCGA-XK-AAIW-01 10 72531147 72531147 C T TBATA Silent p.P347P 0.39 TCGA-XK-AAIW-01 10 72636336 72636336 G A SGPL1 Missense_Mutation p.R495Q 0.39 deleterious(0.02) benign(0.001) TCGA-XK-AAIW-01 10 73055655 73055655 C T UNC5B Missense_Mutation p.R755C 0.11 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 10 73055702 73055702 G A UNC5B Silent p.L770L 0.39 TCGA-XK-AAIW-01 10 73491778 73491778 G A CDH23 Silent p.S1255S 0.39 TCGA-XK-AAIW-01 10 73574912 73574912 G A CDH23 Silent p.T1074T 0.58 TCGA-XK-AAIW-01 10 73767211 73767211 C T CHST3 Missense_Mutation p.T141M 0.43 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 10 73767213 73767213 C T CHST3 Missense_Mutation p.R142C 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 73767545 73767545 C T CHST3 Silent p.C252C 0.28 TCGA-XK-AAIW-01 10 74034170 74034170 C T DDIT4 Missense_Mutation p.P66S 0.33 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 10 74673183 74673183 T C OIT3 Missense_Mutation p.V303A 0.40 deleterious(0.01) benign(0.305) TCGA-XK-AAIW-01 10 74692156 74692156 C T OIT3 Silent p.D504D 0.32 TCGA-XK-AAIW-01 10 74806744 74806744 C T P4HA1 Missense_Mutation p.R339H 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 10 74914063 74914063 G A ECD Missense_Mutation p.A245V 0.10 tolerated(0.1) possibly_damaging(0.861) TCGA-XK-AAIW-01 10 75234727 75234727 C T PPP3CB Missense_Mutation p.G158D 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 75277322 75277322 C T USP54 Silent p.K954K 0.34 TCGA-XK-AAIW-01 10 75519998 75519998 G T SEC24C Missense_Mutation p.S235I 0.44 tolerated(0.12) benign(0.042) TCGA-XK-AAIW-01 10 75557812 75557812 C T ZSWIM8 Silent p.H1312H 0.42 TCGA-XK-AAIW-01 10 75565362 75565362 G A NDST2 Nonsense_Mutation p.R577* 0.48 TCGA-XK-AAIW-01 10 75672731 75672731 G T PLAU Missense_Mutation p.K81N 0.35 deleterious(0.02) possibly_damaging(0.756) TCGA-XK-AAIW-01 10 7608139 7608139 G A ITIH5 Missense_Mutation p.A794V 0.47 deleterious(0.01) possibly_damaging(0.575) TCGA-XK-AAIW-01 10 7618675 7618675 G A ITIH5 Silent p.I573I 0.17 TCGA-XK-AAIW-01 10 76732345 76732345 C T KAT6B Nonsense_Mutation p.R337* 0.44 TCGA-XK-AAIW-01 10 7679251 7679251 C T ITIH5 Missense_Mutation p.A198T 0.33 tolerated(0.94) benign(0.004) TCGA-XK-AAIW-01 10 76868940 76868940 C A DUSP13 5'UTR 0.25 TCGA-XK-AAIW-01 10 77542742 77542742 G T C10orf11 Missense_Mutation p.K3N 0.29 deleterious(0.01) benign(0.271) TCGA-XK-AAIW-01 10 77795870 77795870 C A C10orf11 Missense_Mutation p.T51N 0.33 deleterious(0) possibly_damaging(0.607) TCGA-XK-AAIW-01 10 7820854 7820854 T - KIN Frame_Shift_Del p.T169Lfs*9 0.36 TCGA-XK-AAIW-01 10 7841803 7841803 C T ATP5C1 Missense_Mutation p.A166V 0.32 tolerated(0.1) benign(0.243) TCGA-XK-AAIW-01 10 7844330 7844330 C A ATP5C1 Silent p.S245S 0.26 TCGA-XK-AAIW-01 10 79581055 79581055 C T DLG5 Missense_Mutation p.A1063T 0.37 tolerated_low_confidence(0.27) benign(0.001) TCGA-XK-AAIW-01 10 79581713 79581713 C A DLG5 Missense_Mutation p.Q843H 0.30 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 10 79589981 79589981 C T DLG5 Missense_Mutation p.R668H 0.35 deleterious(0) possibly_damaging(0.747) TCGA-XK-AAIW-01 10 79737125 79737125 G A POLR3A 3'UTR 0.38 TCGA-XK-AAIW-01 10 79739952 79739952 G A POLR3A Missense_Mutation p.T1324M 0.44 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 10 8006411 8006411 G A TAF3 Missense_Mutation p.G313E 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 10 81050916 81050916 C T ZMIZ1 Silent p.S247S 0.34 TCGA-XK-AAIW-01 10 81056320 81056320 C A ZMIZ1 Silent p.T441T 0.27 TCGA-XK-AAIW-01 10 81060603 81060603 C T ZMIZ1 Silent p.R641R 0.44 TCGA-XK-AAIW-01 10 81072584 81072584 C A ZMIZ1 3'UTR 0.36 TCGA-XK-AAIW-01 10 81319187 81319187 G A SFTPA2 Missense_Mutation p.A18V 0.22 tolerated(0.58) benign(0) TCGA-XK-AAIW-01 10 82036245 82036245 G A MAT1A Missense_Mutation p.R219C 0.17 deleterious(0) probably_damaging(0.963) TCGA-XK-AAIW-01 10 82264514 82264514 C T TSPAN14 Silent p.L38L 0.27 TCGA-XK-AAIW-01 10 85984361 85984361 C T LRIT2 Missense_Mutation p.R207H 0.34 tolerated(0.09) possibly_damaging(0.74) TCGA-XK-AAIW-01 10 86017727 86017727 G A RGR Missense_Mutation p.A241T 0.22 tolerated(0.34) benign(0.022) TCGA-XK-AAIW-01 10 86131100 86131100 C T CCSER2 Missense_Mutation p.R98C 0.51 tolerated(0.29) benign(0.02) TCGA-XK-AAIW-01 10 88441268 88441268 C A LDB3 Missense_Mutation p.P133T 0.24 tolerated(0.25) benign(0.053) TCGA-XK-AAIW-01 10 88476313 88476313 T C LDB3 Silent p.R492R 0.44 TCGA-XK-AAIW-01 10 88677048 88677048 A G BMPR1A Missense_Mutation p.Y278C 0.23 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 10 88761405 88761405 C T RP11-96C23.14 RNA 0.30 TCGA-XK-AAIW-01 10 88820713 88820713 G T GLUD1 Missense_Mutation p.P340T 0.34 deleterious(0.02) benign(0.199) TCGA-XK-AAIW-01 10 88946859 88946859 C T FAM35A Missense_Mutation p.A737V 0.28 tolerated(1) benign(0) TCGA-XK-AAIW-01 10 90342955 90342955 G T RNLS 5'UTR 0.32 TCGA-XK-AAIW-01 10 90673111 90673111 T C STAMBPL1 Missense_Mutation p.V225A 0.42 tolerated(0.6) benign(0.002) TCGA-XK-AAIW-01 10 91066443 91066443 C T IFIT2 Missense_Mutation p.P244S 0.38 tolerated(0.22) benign(0.382) TCGA-XK-AAIW-01 10 91066770 91066770 G A IFIT2 Missense_Mutation p.A353T 0.09 tolerated(0.08) probably_damaging(0.971) TCGA-XK-AAIW-01 10 91099418 91099418 G A IFIT3 Missense_Mutation p.A336T 0.39 tolerated(0.32) benign(0) TCGA-XK-AAIW-01 10 91162577 91162577 C T IFIT1 Missense_Mutation p.A182V 0.46 deleterious(0) probably_damaging(0.909) TCGA-XK-AAIW-01 10 91198529 91198529 G A SLC16A12 Missense_Mutation p.A287V 0.48 deleterious(0.01) probably_damaging(0.928) TCGA-XK-AAIW-01 10 91371602 91371602 G A PANK1 Missense_Mutation p.R303C 0.14 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 10 92509039 92509039 G A HTR7 Silent p.D284D 0.58 TCGA-XK-AAIW-01 10 93244322 93244322 C T HECTD2 Missense_Mutation p.R294C 0.43 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 10 93722417 93722417 C T BTAF1 Silent p.V462V 0.37 TCGA-XK-AAIW-01 10 93753481 93753481 G T BTAF1 Nonsense_Mutation p.G1026* 0.42 TCGA-XK-AAIW-01 10 94109442 94109442 G A MARCH5 Missense_Mutation p.V190I 0.41 tolerated(0.25) benign(0.002) TCGA-XK-AAIW-01 10 94228698 94228698 G T IDE Missense_Mutation p.A753D 0.44 tolerated(0.34) benign(0.14) TCGA-XK-AAIW-01 10 94368802 94368802 G A KIF11 Missense_Mutation p.R138H 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 94613 94613 C T TUBB8 Missense_Mutation p.M73I 0.28 tolerated_low_confidence(0.09) benign(0.047) TCGA-XK-AAIW-01 10 94679782 94679782 G A EXOC6 Missense_Mutation p.R288Q 0.32 deleterious(0) benign(0.217) TCGA-XK-AAIW-01 10 94834933 94834933 G A CYP26A1 Missense_Mutation p.A245T 0.55 tolerated(0.32) possibly_damaging(0.636) TCGA-XK-AAIW-01 10 95103666 95103666 A G MYOF Missense_Mutation p.C1425R 0.50 tolerated(0.44) benign(0) TCGA-XK-AAIW-01 10 95132766 95132766 G A MYOF Missense_Mutation p.A793V 0.44 deleterious(0.01) possibly_damaging(0.562) TCGA-XK-AAIW-01 10 95660860 95660860 G A SLC35G1 Silent p.S237S 0.46 TCGA-XK-AAIW-01 10 96058386 96058386 C T PLCE1 Silent p.L1806L 0.46 TCGA-XK-AAIW-01 10 96162451 96162451 C T TBC1D12 Silent p.G27G 0.65 TCGA-XK-AAIW-01 10 96612526 96612526 T A CYP2C19 Missense_Mutation p.M443K 0.34 deleterious(0) probably_damaging(0.958) TCGA-XK-AAIW-01 10 96701627 96701627 T C CYP2C9 Missense_Mutation p.Y61H 0.33 deleterious(0.02) possibly_damaging(0.869) TCGA-XK-AAIW-01 10 96971776 96971776 T C C10orf129 Silent p.P299P 0.30 TCGA-XK-AAIW-01 10 97607363 97607363 G A ENTPD1 Missense_Mutation p.C337Y 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 97625945 97625945 C T ENTPD1 Silent p.S458S 0.50 TCGA-XK-AAIW-01 10 97916526 97916526 A G ZNF518A RNA 0.38 TCGA-XK-AAIW-01 10 98173004 98173004 G A TLL2 Silent p.R331R 0.10 TCGA-XK-AAIW-01 10 98362088 98362088 G A PIK3AP1 Missense_Mutation p.T770I 0.12 tolerated(0.18) benign(0.002) TCGA-XK-AAIW-01 10 98744275 98744275 C A C10orf12 Missense_Mutation p.P1043H 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 98761034 98761034 C T SLIT1 Silent p.T1480T 0.38 TCGA-XK-AAIW-01 10 99019159 99019160 - T ARHGAP19 Frame_Shift_Ins p.N280Kfs*6 0.35 TCGA-XK-AAIW-01 10 99025877 99025877 G A ARHGAP19 Missense_Mutation p.A21V 0.40 tolerated_low_confidence(0.31) benign(0.051) TCGA-XK-AAIW-01 10 99133475 99133475 C T RRP12 Missense_Mutation p.G628E 0.35 deleterious(0) probably_damaging(0.93) TCGA-XK-AAIW-01 10 99141223 99141223 G A RRP12 Silent p.C446C 0.26 TCGA-XK-AAIW-01 10 99211512 99211512 G A ZDHHC16 Missense_Mutation p.R27H 0.48 tolerated(0.07) probably_damaging(0.992) TCGA-XK-AAIW-01 10 99350168 99350168 G A C10orf62 Missense_Mutation p.E172K 0.20 deleterious(0) possibly_damaging(0.802) TCGA-XK-AAIW-01 10 99359467 99359467 C A HOGA1 Missense_Mutation p.L167M 0.07 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 10 99426869 99426869 C T PI4K2A Missense_Mutation p.R394W 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 10 99527606 99527606 G A SFRP5 Missense_Mutation p.R207C 0.32 deleterious(0) probably_damaging(0.973) TCGA-XK-AAIW-01 10 99640010 99640010 G A CRTAC1 Silent p.C605C 0.48 TCGA-XK-AAIW-01 10 99696033 99696033 G A CRTAC1 Silent p.Y105Y 0.28 TCGA-XK-AAIW-01 10 99969296 99969296 A - R3HCC1L Frame_Shift_Del p.K477Rfs*18 0.25 TCGA-XK-AAIW-01 11 100064390 100064390 A G CNTN5 Missense_Mutation p.R627G 0.13 tolerated(1) benign(0.232) TCGA-XK-AAIW-01 11 100221465 100221465 C T CNTN5 Silent p.S1021S 0.21 TCGA-XK-AAIW-01 11 101828970 101828970 A G KIAA1377 Missense_Mutation p.K193R 0.38 tolerated(0.28) benign(0.016) TCGA-XK-AAIW-01 11 101946621 101946621 C T C11orf70 Silent p.D151D 0.59 TCGA-XK-AAIW-01 11 102195288 102195288 C T BIRC3 Silent p.S16S 0.30 TCGA-XK-AAIW-01 11 102706791 102706791 G T MMP3 3'UTR 0.11 TCGA-XK-AAIW-01 11 102742417 102742417 C A MMP12 RNA 0.31 TCGA-XK-AAIW-01 11 102742654 102742654 G A MMP12 RNA 0.31 TCGA-XK-AAIW-01 11 103908404 103908404 G A DDI1 Missense_Mutation p.R285Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 104034652 104034652 G A PDGFD Missense_Mutation p.H2Y 0.33 tolerated_low_confidence(0.18) benign(0.001) TCGA-XK-AAIW-01 11 104916042 104916042 C A CARD16 5'UTR 0.40 TCGA-XK-AAIW-01 11 105483076 105483076 C T GRIA4 Silent p.S54S 0.19 TCGA-XK-AAIW-01 11 10580686 10580686 G A LYVE1 Missense_Mutation p.T314I 0.49 deleterious(0.01) benign(0.209) TCGA-XK-AAIW-01 11 105925166 105925166 T C KBTBD3 Missense_Mutation p.N84D 0.43 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 11 10622544 10622544 C T MRVI1 Silent p.T646T 0.40 TCGA-XK-AAIW-01 11 10631334 10631334 C T MRVI1 Missense_Mutation p.M504I 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-XK-AAIW-01 11 107260807 107260807 G A CWF19L2 Missense_Mutation p.A622V 0.20 deleterious(0.03) benign(0.128) TCGA-XK-AAIW-01 11 107677515 107677515 C T SLC35F2 Missense_Mutation p.V168M 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 11 107832960 107832960 G A RAB39A Silent p.T172T 0.42 TCGA-XK-AAIW-01 11 107920642 107920642 C T CUL5 Missense_Mutation p.T87M 0.20 tolerated(0.11) benign(0.289) TCGA-XK-AAIW-01 11 10794725 10794725 C T CTR9 Missense_Mutation p.R878W 0.43 deleterious(0) probably_damaging(0.973) TCGA-XK-AAIW-01 11 10800531 10800531 C T CTR9 Missense_Mutation p.S1134L 0.36 deleterious_low_confidence(0) benign(0.32) TCGA-XK-AAIW-01 11 108014721 108014721 G A ACAT1 Missense_Mutation p.A318T 0.37 deleterious(0) possibly_damaging(0.908) TCGA-XK-AAIW-01 11 108382110 108382110 G T EXPH5 Missense_Mutation p.P1375H 0.38 tolerated(0.06) probably_damaging(0.955) TCGA-XK-AAIW-01 11 108384689 108384689 A G EXPH5 Silent p.N515N 0.41 TCGA-XK-AAIW-01 11 108788748 108788748 A T DDX10 Intron 0.42 TCGA-XK-AAIW-01 11 110035942 110035942 C T ZC3H12C Missense_Mutation p.P711L 0.35 deleterious(0) benign(0.029) TCGA-XK-AAIW-01 11 110124753 110124753 G A RDX Nonsense_Mutation p.R293* 0.08 TCGA-XK-AAIW-01 11 1104340 1104340 C T MUC2 3'UTR 0.30 TCGA-XK-AAIW-01 11 111156466 111156466 C T C11orf53 Missense_Mutation p.T133M 0.29 tolerated(0.1) benign(0.245) TCGA-XK-AAIW-01 11 111571640 111571640 G A SIK2 Missense_Mutation p.G170D 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-XK-AAIW-01 11 111625257 111625257 G A PPP2R1B Missense_Mutation p.T332I 0.33 deleterious(0.02) benign(0.314) TCGA-XK-AAIW-01 11 111657126 111657126 C A ALG9 Missense_Mutation p.G447C 0.29 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-XK-AAIW-01 11 111747585 111747585 G A FDXACB1 Silent p.D160D 0.50 TCGA-XK-AAIW-01 11 111904215 111904215 G T DLAT Missense_Mutation p.D250Y 0.60 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 11 111955947 111955947 G A TIMM8B 3'UTR 0.45 TCGA-XK-AAIW-01 11 112014307 112014307 A G IL18 3'UTR 0.50 TCGA-XK-AAIW-01 11 11292756 11292756 C T GALNT18 Missense_Mutation p.V587M 0.35 deleterious(0) possibly_damaging(0.9) TCGA-XK-AAIW-01 11 113222015 113222015 C T TTC12 Silent p.G434G 0.18 TCGA-XK-AAIW-01 11 113270280 113270280 C A ANKK1 Missense_Mutation p.P530Q 0.56 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 11 113675464 113675464 G A USP28 Silent p.S863S 0.33 TCGA-XK-AAIW-01 11 113675698 113675698 C T USP28 Missense_Mutation p.R824Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 113683227 113683227 C T USP28 Splice_Site p.X582_splice 0.27 TCGA-XK-AAIW-01 11 113704168 113704168 C T USP28 Missense_Mutation p.A245T 0.37 deleterious(0) possibly_damaging(0.855) TCGA-XK-AAIW-01 11 114168749 114168749 C A NNMT Silent p.S77S 0.41 TCGA-XK-AAIW-01 11 114393111 114393111 A G NXPE1 Missense_Mutation p.F266S 0.10 tolerated(0.49) benign(0.003) TCGA-XK-AAIW-01 11 114401164 114401164 G A NXPE1 Missense_Mutation p.A47V 0.44 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 11 114452476 114452476 A G NXPE4 Missense_Mutation p.F288S 0.40 tolerated(0.15) benign(0.003) TCGA-XK-AAIW-01 11 115099882 115099882 G A CADM1 Silent p.H224H 0.40 TCGA-XK-AAIW-01 11 115109305 115109305 G A CADM1 Silent p.N113N 0.38 TCGA-XK-AAIW-01 11 116619253 116619253 G A BUD13 Missense_Mutation p.A602V 0.37 deleterious(0) probably_damaging(0.954) TCGA-XK-AAIW-01 11 116657731 116657731 C T ZNF259 Silent p.R126R 0.44 TCGA-XK-AAIW-01 11 116661762 116661762 C A APOA5 Missense_Mutation p.E61D 0.47 deleterious(0.01) possibly_damaging(0.82) TCGA-XK-AAIW-01 11 116692112 116692112 C T APOA4 Missense_Mutation p.R221H 0.39 tolerated(0.07) benign(0.105) TCGA-XK-AAIW-01 11 117030703 117030703 G T PAFAH1B2 Silent p.V45V 0.23 TCGA-XK-AAIW-01 11 117052666 117052666 G A SIDT2 Missense_Mutation p.R150H 0.56 tolerated(0.06) benign(0.022) TCGA-XK-AAIW-01 11 117062993 117062993 G A SIDT2 Silent p.A632A 0.43 TCGA-XK-AAIW-01 11 117152859 117152859 G A RNF214 Missense_Mutation p.A529T 0.44 tolerated(0.09) possibly_damaging(0.726) TCGA-XK-AAIW-01 11 117282877 117282877 G A CEP164 Missense_Mutation p.R1459H 0.12 tolerated(1) benign(0.014) TCGA-XK-AAIW-01 11 117374666 117374666 C T DSCAML1 Silent p.S811S 0.49 TCGA-XK-AAIW-01 11 118366536 118366536 G T KMT2A Missense_Mutation p.A1829S 0.45 probably_damaging(0.993) TCGA-XK-AAIW-01 11 118368689 118368689 G A KMT2A Nonsense_Mutation p.W1901* 0.12 TCGA-XK-AAIW-01 11 118376991 118376991 C T KMT2A Missense_Mutation p.L3462F 0.47 probably_damaging(0.997) TCGA-XK-AAIW-01 11 118390416 118390416 C T KMT2A Nonsense_Mutation p.R3744* 0.09 TCGA-XK-AAIW-01 11 118403905 118403905 C T TMEM25 Missense_Mutation p.A219V 0.20 deleterious(0) benign(0.273) TCGA-XK-AAIW-01 11 118531315 118531315 C T TREH Silent p.V345V 0.38 TCGA-XK-AAIW-01 11 118765271 118765271 C T CXCR5 Silent p.L340L 0.29 TCGA-XK-AAIW-01 11 118770809 118770809 G A BCL9L Missense_Mutation p.P1075S 0.36 probably_damaging(0.96) TCGA-XK-AAIW-01 11 118771450 118771450 G A BCL9L Missense_Mutation p.A1001V 0.42 possibly_damaging(0.736) TCGA-XK-AAIW-01 11 118772814 118772814 C T BCL9L Silent p.L546L 0.23 TCGA-XK-AAIW-01 11 118773618 118773618 C A BCL9L Splice_Site p.X279_splice 0.67 TCGA-XK-AAIW-01 11 118849494 118849494 G A FOXR1 Missense_Mutation p.A22T 0.44 tolerated(0.08) possibly_damaging(0.838) TCGA-XK-AAIW-01 11 118898389 118898389 C T SLC37A4 Missense_Mutation p.A192T 0.45 tolerated(0.87) benign(0.007) TCGA-XK-AAIW-01 11 118921764 118921764 C T HYOU1 Missense_Mutation p.V550M 0.48 deleterious(0.03) possibly_damaging(0.771) TCGA-XK-AAIW-01 11 118965989 118965989 T C H2AFX Missense_Mutation p.H39R 0.42 tolerated_low_confidence(0.15) benign(0.216) TCGA-XK-AAIW-01 11 118978777 118978777 C T C2CD2L Missense_Mutation p.A109V 0.27 deleterious(0.04) probably_damaging(1) TCGA-XK-AAIW-01 11 118986911 118986911 G A C2CD2L Missense_Mutation p.R690H 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 119027082 119027082 A G ABCG4 Missense_Mutation p.K244E 0.39 deleterious(0) benign(0.13) TCGA-XK-AAIW-01 11 119031662 119031662 G A ABCG4 Missense_Mutation p.R596H 0.49 tolerated(0.35) benign(0) TCGA-XK-AAIW-01 11 119044644 119044644 T C NLRX1 Missense_Mutation p.L229P 0.16 deleterious(0.02) probably_damaging(0.932) TCGA-XK-AAIW-01 11 119052898 119052898 C T NLRX1 Missense_Mutation p.T817M 0.39 deleterious(0) probably_damaging(0.961) TCGA-XK-AAIW-01 11 11913565 11913565 G A USP47 Silent p.P68P 0.46 TCGA-XK-AAIW-01 11 119170497 119170497 C A CBL 3'UTR 0.39 TCGA-XK-AAIW-01 11 120008357 120008357 C T TRIM29 Missense_Mutation p.R128H 0.25 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 11 12029974 12029974 G A DKK3 Silent p.R52R 0.36 TCGA-XK-AAIW-01 11 120348948 120348948 C T ARHGEF12 Missense_Mutation p.R1206C 0.39 deleterious_low_confidence(0) benign(0.205) TCGA-XK-AAIW-01 11 120744809 120744809 C A GRIK4 Missense_Mutation p.A314D 0.50 deleterious(0.01) benign(0.193) TCGA-XK-AAIW-01 11 120980048 120980048 C T TECTA Silent p.G109G 0.33 TCGA-XK-AAIW-01 11 120983805 120983805 G A TECTA Missense_Mutation p.V171M 0.32 deleterious(0) possibly_damaging(0.561) TCGA-XK-AAIW-01 11 120996289 120996289 C T TECTA Silent p.H494H 0.43 TCGA-XK-AAIW-01 11 120996472 120996472 C T TECTA Silent p.C555C 0.41 TCGA-XK-AAIW-01 11 121000865 121000865 C T TECTA Silent p.S962S 0.31 TCGA-XK-AAIW-01 11 121028673 121028673 C T TECTA Missense_Mutation p.R1477C 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-XK-AAIW-01 11 121177112 121177112 G A SC5D Missense_Mutation p.V121I 0.28 tolerated(0.23) benign(0.001) TCGA-XK-AAIW-01 11 121454219 121454219 C T SORL1 Silent p.C1211C 0.32 TCGA-XK-AAIW-01 11 121458730 121458730 G A SORL1 Silent p.E1272E 0.29 TCGA-XK-AAIW-01 11 121475005 121475005 G A SORL1 Silent p.S1541S 0.30 TCGA-XK-AAIW-01 11 122680579 122680579 C A UBASH3B Silent p.T645T 0.32 TCGA-XK-AAIW-01 11 122944221 122944221 G A CLMP Silent p.S361S 0.33 TCGA-XK-AAIW-01 11 123601449 123601449 G A ZNF202 Nonsense_Mutation p.R50* 0.17 TCGA-XK-AAIW-01 11 123753985 123753985 C T TMEM225 Missense_Mutation p.E180K 0.38 tolerated(0.38) benign(0.012) TCGA-XK-AAIW-01 11 123900355 123900355 C T OR10G8 Missense_Mutation p.A9V 0.35 tolerated(0.06) benign(0.001) TCGA-XK-AAIW-01 11 123900990 123900990 G A OR10G8 Missense_Mutation p.V221I 0.32 tolerated(0.3) benign(0.05) TCGA-XK-AAIW-01 11 123995096 123995096 C T VWA5A Intron 0.42 TCGA-XK-AAIW-01 11 124121244 124121244 C A OR8G1 Intron 0.25 TCGA-XK-AAIW-01 11 124530523 124530523 C T SIAE Splice_Site p.X135_splice 0.35 TCGA-XK-AAIW-01 11 124743643 124743643 G A ROBO3 Missense_Mutation p.G557R 0.43 deleterious(0.01) benign(0.367) TCGA-XK-AAIW-01 11 124766120 124766120 C A ROBO4 Missense_Mutation p.S218I 0.37 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 11 124789867 124789867 T C HEPN1 Missense_Mutation p.V74A 0.42 tolerated_low_confidence(0.31) benign(0.001) TCGA-XK-AAIW-01 11 1247968 1247968 G A MUC5B Missense_Mutation p.R108H 0.33 unknown(0) TCGA-XK-AAIW-01 11 1250942 1250942 G A MUC5B Silent p.T375T 0.27 TCGA-XK-AAIW-01 11 125221244 125221244 G A PKNOX2 Missense_Mutation p.A15T 0.33 deleterious_low_confidence(0) probably_damaging(0.926) TCGA-XK-AAIW-01 11 1256370 1256370 G A MUC5B Missense_Mutation p.V896M 0.44 unknown(0) TCGA-XK-AAIW-01 11 125769528 125769528 C T HYLS1 Missense_Mutation p.L89F 0.48 tolerated(0.7) benign(0.014) TCGA-XK-AAIW-01 11 125864270 125864270 A G CDON Silent p.S853S 0.32 TCGA-XK-AAIW-01 11 126126678 126126678 G T FAM118B Missense_Mutation p.D305Y 0.35 deleterious(0) possibly_damaging(0.502) TCGA-XK-AAIW-01 11 126126745 126126745 C T FAM118B Missense_Mutation p.S327L 0.34 tolerated(0.28) benign(0) TCGA-XK-AAIW-01 11 126145710 126145710 G A FOXRED1 Missense_Mutation p.R252H 0.31 tolerated(0.21) benign(0.003) TCGA-XK-AAIW-01 11 126162649 126162649 C T TIRAP Silent p.R115R 0.36 TCGA-XK-AAIW-01 11 126162816 126162816 C T TIRAP Missense_Mutation p.A171V 0.20 deleterious(0) probably_damaging(0.957) TCGA-XK-AAIW-01 11 126162971 126162971 G A TIRAP Missense_Mutation p.E223K 0.46 tolerated(0.89) benign(0.001) TCGA-XK-AAIW-01 11 126215288 126215288 T C DCPS Missense_Mutation p.V265A 0.22 tolerated(0.07) benign(0.154) TCGA-XK-AAIW-01 11 1268453 1268453 C T MUC5B Missense_Mutation p.P3448L 0.21 unknown(0) TCGA-XK-AAIW-01 11 1271758 1271758 G A MUC5B Missense_Mutation p.A4550T 0.37 unknown(0) TCGA-XK-AAIW-01 11 128781383 128781383 G A KCNJ5 Missense_Mutation p.R72Q 0.40 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 11 128839028 128839028 C T ARHGAP32 Missense_Mutation p.R2013H 0.48 deleterious_low_confidence(0.02) benign(0.015) TCGA-XK-AAIW-01 11 128868309 128868309 C T ARHGAP32 Missense_Mutation p.R353H 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 11 129724588 129724588 C T TMEM45B Nonsense_Mutation p.Q88* 0.52 TCGA-XK-AAIW-01 11 129734510 129734510 C T NFRKB 3'UTR 0.38 TCGA-XK-AAIW-01 11 129744711 129744711 C T NFRKB Missense_Mutation p.R677H 0.34 deleterious(0) unknown(0) TCGA-XK-AAIW-01 11 129993594 129993594 G A APLP2 Missense_Mutation p.R337H 0.42 tolerated(0.15) probably_damaging(0.995) TCGA-XK-AAIW-01 11 130060404 130060404 G A ST14 Silent p.T230T 0.31 TCGA-XK-AAIW-01 11 130106968 130106968 C T ZBTB44 Missense_Mutation p.D430N 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 11 130275344 130275344 C T ADAMTS8 3'UTR 0.47 TCGA-XK-AAIW-01 11 130332480 130332480 G A ADAMTS15 Silent p.E449E 0.31 TCGA-XK-AAIW-01 11 130775960 130775960 C T SNX19 Missense_Mutation p.M777I 0.37 tolerated(0.22) benign(0.001) TCGA-XK-AAIW-01 11 130784663 130784663 C T SNX19 Missense_Mutation p.G391D 0.15 tolerated(0.29) benign(0.178) TCGA-XK-AAIW-01 11 132177679 132177679 C T NTM Missense_Mutation p.A208V 0.41 deleterious(0.01) possibly_damaging(0.627) TCGA-XK-AAIW-01 11 132306038 132306038 G A OPCML Silent p.N293N 0.38 TCGA-XK-AAIW-01 11 132398972 132398972 C A OPCML Missense_Mutation p.R170I 0.22 deleterious(0) possibly_damaging(0.797) TCGA-XK-AAIW-01 11 134163074 134163074 G A GLB1L3 Missense_Mutation p.D283N 0.31 tolerated(0.49) benign(0.003) TCGA-XK-AAIW-01 11 14303157 14303157 C T RRAS2 Missense_Mutation p.R173Q 0.36 deleterious(0.02) probably_damaging(0.969) TCGA-XK-AAIW-01 11 14496079 14496079 G A COPB1 Missense_Mutation p.R567C 0.41 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 11 14539500 14539500 T C PSMA1 Missense_Mutation p.M32V 0.21 tolerated(0.1) benign(0.1) TCGA-XK-AAIW-01 11 14665692 14665692 C T PDE3B Missense_Mutation p.P24L 0.55 tolerated(0.15) benign(0.001) TCGA-XK-AAIW-01 11 14990333 14990333 A T CALCA 3'UTR 0.34 TCGA-XK-AAIW-01 11 1579038 1579038 G A DUSP8 Silent p.S269S 0.18 TCGA-XK-AAIW-01 11 1579048 1579048 C T DUSP8 Missense_Mutation p.G266D 0.25 tolerated(0.78) probably_damaging(1) TCGA-XK-AAIW-01 11 16010577 16010577 G A SOX6 Silent p.P624P 0.42 TCGA-XK-AAIW-01 11 1606354 1606354 G A KRTAP5-1 Silent p.C42C 0.40 TCGA-XK-AAIW-01 11 16760273 16760273 G A C11orf58 5'UTR 0.32 TCGA-XK-AAIW-01 11 17112906 17112906 G A PIK3C2A Missense_Mutation p.T1618M 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 17351800 17351800 C T NUCB2 Missense_Mutation p.R377C 0.39 deleterious(0) possibly_damaging(0.776) TCGA-XK-AAIW-01 11 17418790 17418790 C T ABCC8 Missense_Mutation p.R1313H 0.32 deleterious(0) possibly_damaging(0.902) TCGA-XK-AAIW-01 11 17450217 17450217 G A ABCC8 Silent p.S606S 0.63 TCGA-XK-AAIW-01 11 17491740 17491740 T C ABCC8 Missense_Mutation p.Y107C 0.13 deleterious(0) possibly_damaging(0.903) TCGA-XK-AAIW-01 11 17523051 17523051 A G USH1C Missense_Mutation p.V753A 0.53 deleterious_low_confidence(0) possibly_damaging(0.461) TCGA-XK-AAIW-01 11 17531357 17531357 G T USH1C Missense_Mutation p.P520H 0.41 deleterious_low_confidence(0) possibly_damaging(0.711) TCGA-XK-AAIW-01 11 17544427 17544427 C T USH1C Missense_Mutation p.R308Q 0.25 tolerated(0.11) benign(0.096) TCGA-XK-AAIW-01 11 17552956 17552956 G - USH1C Frame_Shift_Del p.R80Gfs*6 0.25 TCGA-XK-AAIW-01 11 17757921 17757921 C T KCNC1 Silent p.G124G 0.61 TCGA-XK-AAIW-01 11 17757938 17757938 G T KCNC1 Missense_Mutation p.S130I 0.30 tolerated(0.19) benign(0.008) TCGA-XK-AAIW-01 11 18194972 18194972 C T MRGPRX4 Missense_Mutation p.R57C 0.48 deleterious(0.04) benign(0.12) TCGA-XK-AAIW-01 11 18231401 18231401 C A RP11-113D6.10 Missense_Mutation p.L63I 0.26 tolerated(0.62) possibly_damaging(0.666) TCGA-XK-AAIW-01 11 18318477 18318477 C A HPS5 Missense_Mutation p.G460C 0.33 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 11 18502173 18502173 G T TSG101 Missense_Mutation p.L365I 0.19 tolerated(0.19) benign(0.224) TCGA-XK-AAIW-01 11 18503234 18503234 G T TSG101 Silent p.I342I 0.41 TCGA-XK-AAIW-01 11 18636790 18636790 G T SPTY2D1 Missense_Mutation p.S344Y 0.38 deleterious(0.05) benign(0.193) TCGA-XK-AAIW-01 11 18637464 18637464 G A SPTY2D1 Silent p.T119T 0.27 TCGA-XK-AAIW-01 11 18722575 18722575 C T TMEM86A Silent p.S39S 0.43 TCGA-XK-AAIW-01 11 18739554 18739554 G A IGSF22 Silent p.N299N 0.46 TCGA-XK-AAIW-01 11 18743465 18743465 G A IGSF22 Missense_Mutation p.A78V 0.46 tolerated(0.55) benign(0.017) TCGA-XK-AAIW-01 11 19077910 19077910 T C MRGPRX2 Missense_Mutation p.T14A 0.36 tolerated(0.67) benign(0.003) TCGA-XK-AAIW-01 11 19213898 19213898 G A CSRP3 Missense_Mutation p.T33M 0.27 tolerated(0.39) possibly_damaging(0.727) TCGA-XK-AAIW-01 11 19251025 19251025 T C E2F8 Silent p.L623L 0.40 TCGA-XK-AAIW-01 11 1973409 1973409 G A MRPL23 Missense_Mutation p.V65M 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 19901631 19901631 C T NAV2 Missense_Mutation p.A243V 0.53 tolerated_low_confidence(0.11) benign(0.003) TCGA-XK-AAIW-01 11 20648287 20648287 G A SLC6A5 Missense_Mutation p.V432I 0.42 deleterious(0.05) possibly_damaging(0.799) TCGA-XK-AAIW-01 11 20652239 20652239 A G SLC6A5 Missense_Mutation p.D501G 0.19 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 214299 214299 C T RIC8A Silent p.C521C 0.30 TCGA-XK-AAIW-01 11 21592318 21592318 G T NELL1 Missense_Mutation p.K663N 0.46 tolerated(0.3) benign(0.067) TCGA-XK-AAIW-01 11 2161923 2161923 C T IGF2 Intron 0.36 TCGA-XK-AAIW-01 11 216658 216658 C T SIRT3 3'UTR 0.36 TCGA-XK-AAIW-01 11 2182031 2182031 C T INS-IGF2 Silent p.E57E 0.44 TCGA-XK-AAIW-01 11 22849398 22849398 G A SVIP Missense_Mutation p.A26V 0.31 deleterious(0.03) probably_damaging(0.99) TCGA-XK-AAIW-01 11 2324133 2324133 T C TSPAN32 Silent p.A42A 0.38 TCGA-XK-AAIW-01 11 2428502 2428502 C T TRPM5 Missense_Mutation p.A989T 0.52 tolerated(0.16) benign(0.031) TCGA-XK-AAIW-01 11 2443516 2443516 C T TRPM5 Silent p.V51V 0.36 TCGA-XK-AAIW-01 11 2594154 2594154 G A KCNQ1 Missense_Mutation p.A287T 0.44 tolerated(0.08) probably_damaging(0.913) TCGA-XK-AAIW-01 11 26681999 26681999 C T ANO3 3'UTR 0.46 TCGA-XK-AAIW-01 11 2683386 2683386 A G KCNQ1 Intron 0.59 TCGA-XK-AAIW-01 11 27076939 27076939 G A BBOX1 Splice_Site 0.38 TCGA-XK-AAIW-01 11 27390171 27390171 T C LGR4 Missense_Mutation p.E700G 0.42 tolerated(0.08) benign(0.142) TCGA-XK-AAIW-01 11 27395187 27395187 C T LGR4 Silent p.T430T 0.41 TCGA-XK-AAIW-01 11 27722532 27722532 C A BDNF 5'UTR 0.43 TCGA-XK-AAIW-01 11 28318407 28318407 C A METTL15 Missense_Mutation p.A236D 0.23 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 11 294384 294384 C T ATHL1 Silent p.S642S 0.09 TCGA-XK-AAIW-01 11 30032763 30032763 C T KCNA4 Missense_Mutation p.G488E 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 3062163 3062163 G A CARS Missense_Mutation p.P140S 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 11 30922042 30922042 T C DCDC1 Missense_Mutation p.N1502S 0.33 tolerated(0.2) possibly_damaging(0.486) TCGA-XK-AAIW-01 11 30930565 30930565 C A DCDC1 Missense_Mutation p.K1282N 0.42 deleterious(0) possibly_damaging(0.607) TCGA-XK-AAIW-01 11 3128661 3128661 G A OSBPL5 Silent p.N297N 0.40 TCGA-XK-AAIW-01 11 3140843 3140843 C T OSBPL5 Missense_Mutation p.V209M 0.35 tolerated(0.1) possibly_damaging(0.66) TCGA-XK-AAIW-01 11 31484797 31484797 G T IMMP1L Silent p.T9T 0.44 TCGA-XK-AAIW-01 11 31653919 31653919 C A ELP4 Silent p.A298A 0.39 TCGA-XK-AAIW-01 11 32410718 32410718 C A WT1 Missense_Mutation p.K480N 0.36 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-XK-AAIW-01 11 32413578 32413578 G A WT1 Nonsense_Mutation p.R458* 0.49 TCGA-XK-AAIW-01 11 32417839 32417839 G A WT1 Silent p.L405L 0.40 TCGA-XK-AAIW-01 11 3249706 3249706 G A MRGPRE Silent p.I107I 0.28 TCGA-XK-AAIW-01 11 3249775 3249775 C T MRGPRE Silent p.L84L 0.44 TCGA-XK-AAIW-01 11 32610621 32610621 C T EIF3M Silent p.S126S 0.41 TCGA-XK-AAIW-01 11 33080601 33080601 C T TCP11L1 Silent p.Y245Y 0.39 TCGA-XK-AAIW-01 11 33118431 33118431 G A CSTF3 Missense_Mutation p.R408C 0.47 deleterious(0.02) benign(0.263) TCGA-XK-AAIW-01 11 33596410 33596410 C T KIAA1549L Nonsense_Mutation p.Q1168* 0.40 TCGA-XK-AAIW-01 11 34107948 34107948 G A CAPRIN1 Missense_Mutation p.V407I 0.42 tolerated(0.35) benign(0.338) TCGA-XK-AAIW-01 11 34680239 34680239 G T EHF Missense_Mutation p.S278I 0.30 deleterious(0.02) possibly_damaging(0.887) TCGA-XK-AAIW-01 11 35463154 35463154 C T PAMR1 Missense_Mutation p.R320H 0.32 tolerated(0.57) benign(0.003) TCGA-XK-AAIW-01 11 36467868 36467868 C T PRR5L Missense_Mutation p.R155C 0.28 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 36472798 36472798 C T PRR5L Nonsense_Mutation p.Q209* 0.45 TCGA-XK-AAIW-01 11 36511471 36511471 G A TRAF6 Missense_Mutation p.R496C 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 36511685 36511685 C T TRAF6 Nonsense_Mutation p.W424* 0.62 TCGA-XK-AAIW-01 11 36516553 36516553 G A TRAF6 Silent p.Y217Y 0.50 TCGA-XK-AAIW-01 11 36595189 36595189 G A RAG1 Missense_Mutation p.R112H 0.41 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-XK-AAIW-01 11 36595998 36595998 T C RAG1 Missense_Mutation p.S382P 0.19 tolerated_low_confidence(0.18) benign(0.047) TCGA-XK-AAIW-01 11 3660067 3660067 C T ART5 Intron 0.51 TCGA-XK-AAIW-01 11 3685475 3685475 G A ART1 3'UTR 0.10 TCGA-XK-AAIW-01 11 3687407 3687407 C T CHRNA10 Missense_Mutation p.R428H 0.19 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 3687551 3687551 G A CHRNA10 Missense_Mutation p.A380V 0.31 tolerated(0.14) benign(0.22) TCGA-XK-AAIW-01 11 3688730 3688730 C T CHRNA10 Silent p.A209A 0.19 TCGA-XK-AAIW-01 11 3704646 3704646 G A NUP98 Silent p.L1568L 0.27 TCGA-XK-AAIW-01 11 3707219 3707219 G A NUP98 Missense_Mutation p.H1554Y 0.39 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 11 376473 376473 C T B4GALNT4 Silent p.T450T 0.44 TCGA-XK-AAIW-01 11 380447 380447 T C B4GALNT4 Splice_Site p.X957_splice 0.45 TCGA-XK-AAIW-01 11 3849003 3849003 C T RHOG Silent p.Q122Q 0.38 TCGA-XK-AAIW-01 11 404596 404596 C T PKP3 3'UTR 0.38 TCGA-XK-AAIW-01 11 406440 406440 G A SIGIRR Silent p.D326D 0.33 TCGA-XK-AAIW-01 11 420840 420840 C T ANO9 Missense_Mutation p.R504H 0.44 deleterious(0.03) benign(0.284) TCGA-XK-AAIW-01 11 43357418 43357418 G T API5 Missense_Mutation p.A456S 0.49 tolerated(0.79) benign(0.021) TCGA-XK-AAIW-01 11 43513610 43513610 C T TTC17 Missense_Mutation p.A1064V 0.43 tolerated(0.13) benign(0.031) TCGA-XK-AAIW-01 11 43918781 43918781 C A ALKBH3 Intron 0.44 TCGA-XK-AAIW-01 11 44097102 44097102 G A ACCS Silent p.S172S 0.52 TCGA-XK-AAIW-01 11 44099415 44099415 C T ACCS Silent p.R225R 0.16 TCGA-XK-AAIW-01 11 44286443 44286443 C A ALX4 Missense_Mutation p.K399N 0.21 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 11 45265561 45265561 C T SYT13 3'UTR 0.37 TCGA-XK-AAIW-01 11 4566922 4566922 C T OR52M1 Missense_Mutation p.R168W 0.39 deleterious(0.01) benign(0.021) TCGA-XK-AAIW-01 11 45671748 45671748 C T CHST1 Silent p.S242S 0.31 TCGA-XK-AAIW-01 11 45832372 45832372 T C SLC35C1 Missense_Mutation p.L194P 0.35 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 11 45883694 45883694 C T CRY2 Missense_Mutation p.R267W 0.26 deleterious(0.01) benign(0.19) TCGA-XK-AAIW-01 11 45891993 45891993 C T CRY2 Missense_Mutation p.R508W 0.21 deleterious(0.01) possibly_damaging(0.849) TCGA-XK-AAIW-01 11 45927426 45927426 G A MAPK8IP1 3'UTR 0.60 TCGA-XK-AAIW-01 11 4622021 4622021 G A TRIM68 Missense_Mutation p.R315C 0.49 tolerated(0.12) probably_damaging(0.932) TCGA-XK-AAIW-01 11 46389291 46389291 G T DGKZ Missense_Mutation p.R309S 0.52 deleterious(0.03) benign(0.04) TCGA-XK-AAIW-01 11 46401088 46401088 C T DGKZ Silent p.A1069A 0.67 TCGA-XK-AAIW-01 11 46407071 46407071 G A CHRM4 Missense_Mutation p.T346M 0.06 deleterious(0.04) probably_damaging(0.998) TCGA-XK-AAIW-01 11 46564389 46564389 C T AMBRA1 Missense_Mutation p.R303H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.882) TCGA-XK-AAIW-01 11 4661076 4661076 T C OR51D1 Missense_Mutation p.V19A 0.10 tolerated(0.51) benign(0.001) TCGA-XK-AAIW-01 11 46637658 46637658 G A HARBI1 Nonsense_Mutation p.Q44* 0.42 TCGA-XK-AAIW-01 11 46703689 46703689 T C ARHGAP1 Missense_Mutation p.T121A 0.41 deleterious(0.01) possibly_damaging(0.731) TCGA-XK-AAIW-01 11 46724280 46724280 C T ZNF408 Silent p.D119D 0.35 TCGA-XK-AAIW-01 11 46727177 46727177 G T ZNF408 Missense_Mutation p.A643S 0.28 tolerated(0.18) benign(0.138) TCGA-XK-AAIW-01 11 46744817 46744817 G A F2 Missense_Mutation p.R135H 0.48 deleterious(0.03) benign(0.052) TCGA-XK-AAIW-01 11 46786747 46786747 G A CKAP5 Silent p.S1157S 0.34 TCGA-XK-AAIW-01 11 46818416 46818416 G A CKAP5 Silent p.G471G 0.44 TCGA-XK-AAIW-01 11 46893139 46893139 G T LRP4 Missense_Mutation p.D1543E 0.73 deleterious(0.04) possibly_damaging(0.591) TCGA-XK-AAIW-01 11 47283152 47283152 G A NR1H3 Missense_Mutation p.A255T 0.42 tolerated(0.14) probably_damaging(0.984) TCGA-XK-AAIW-01 11 47308006 47308006 T C MADD Silent p.S858S 0.43 TCGA-XK-AAIW-01 11 47353711 47353711 C T MYBPC3 Silent p.K1242K 0.41 TCGA-XK-AAIW-01 11 47599542 47599542 G A KBTBD4 Missense_Mutation p.P20S 0.44 tolerated(0.35) benign(0.001) TCGA-XK-AAIW-01 11 47603682 47603682 C T NDUFS3 Missense_Mutation p.R142C 0.40 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 11 47606018 47606018 G A NDUFS3 Silent p.K260K 0.10 TCGA-XK-AAIW-01 11 48145237 48145237 G A PTPRJ Missense_Mutation p.G230D 0.34 tolerated(0.95) benign(0.002) TCGA-XK-AAIW-01 11 489597 489597 G A PTDSS2 Missense_Mutation p.A327T 0.62 deleterious(0.04) possibly_damaging(0.627) TCGA-XK-AAIW-01 11 4903923 4903923 G A OR51T1 Missense_Mutation p.R292H 0.52 deleterious(0.02) benign(0.07) TCGA-XK-AAIW-01 11 4935968 4935968 G A OR51G2 Missense_Mutation p.T309M 0.28 tolerated(0.1) benign(0.026) TCGA-XK-AAIW-01 11 4967865 4967865 G T OR51A4 Missense_Mutation p.L156I 0.48 tolerated(0.24) benign(0.192) TCGA-XK-AAIW-01 11 4968093 4968093 G T OR51A4 Missense_Mutation p.L80M 0.43 tolerated(0.26) possibly_damaging(0.85) TCGA-XK-AAIW-01 11 50003697 50003697 G A OR4C12 Missense_Mutation p.T114I 0.36 tolerated_low_confidence(0.23) benign(0.01) TCGA-XK-AAIW-01 11 5011027 5011027 G A MMP26 Silent p.G83G 0.24 TCGA-XK-AAIW-01 11 51515399 51515399 T A OR4C46 Missense_Mutation p.Y40N 0.09 tolerated_low_confidence(1) benign(0) TCGA-XK-AAIW-01 11 51515403 51515403 T C OR4C46 Missense_Mutation p.V41A 0.09 deleterious_low_confidence(0) benign(0.066) TCGA-XK-AAIW-01 11 5221608 5221608 G A OR51V1 Missense_Mutation p.A108V 0.44 tolerated(0.3) benign(0.098) TCGA-XK-AAIW-01 11 5248219 5248219 G A HBB Silent p.A11A 0.46 TCGA-XK-AAIW-01 11 5322273 5322273 G A OR51B4 Missense_Mutation p.R302C 0.43 deleterious(0.03) benign(0.022) TCGA-XK-AAIW-01 11 5322930 5322930 G T OR51B4 Missense_Mutation p.L83M 0.30 deleterious(0.05) possibly_damaging(0.578) TCGA-XK-AAIW-01 11 534269 534269 C T HRAS Silent p.A18A 0.09 TCGA-XK-AAIW-01 11 5345138 5345138 A G OR51B2 Silent p.Y130Y 0.38 TCGA-XK-AAIW-01 11 5410880 5410880 G A OR51M1 Silent p.G84G 0.48 TCGA-XK-AAIW-01 11 55033097 55033097 C T TRIM48 Nonsense_Mutation p.Q161* 0.10 TCGA-XK-AAIW-01 11 5536527 5536527 G A UBQLNL Missense_Mutation p.A382V 0.42 tolerated(0.11) benign(0.052) TCGA-XK-AAIW-01 11 55433499 55433499 C T OR4C6 Missense_Mutation p.T286I 0.48 deleterious_low_confidence(0.02) benign(0.085) TCGA-XK-AAIW-01 11 555841 555841 C T C11orf35 Silent p.P489P 0.31 TCGA-XK-AAIW-01 11 55587828 55587828 C A OR5D18 Silent p.T241T 0.24 TCGA-XK-AAIW-01 11 55588008 55588008 A G OR5D18 Silent p.T301T 0.30 TCGA-XK-AAIW-01 11 55681353 55681353 T C OR5W2 Missense_Mutation p.K236E 0.20 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 11 55798489 55798489 C T OR5AS1 Missense_Mutation p.L199F 0.40 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 11 55890222 55890222 C T OR8H3 Missense_Mutation p.A125V 0.11 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 55904632 55904632 G T OR8J3 Missense_Mutation p.S188Y 0.32 deleterious(0.03) probably_damaging(1) TCGA-XK-AAIW-01 11 55904809 55904809 G A OR8J3 Missense_Mutation p.P129L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 11 55944981 55944981 C T OR5J2 Silent p.D296D 0.24 TCGA-XK-AAIW-01 11 55999633 55999633 C T OR5T2 Missense_Mutation p.M343I 0.35 tolerated(0.34) benign(0) TCGA-XK-AAIW-01 11 56000473 56000473 C A OR5T2 Missense_Mutation p.Q63H 0.37 deleterious(0) benign(0.112) TCGA-XK-AAIW-01 11 56128085 56128085 C T OR8J1 Silent p.D121D 0.06 TCGA-XK-AAIW-01 11 56431825 56431825 C A OR5AR1 Missense_Mutation p.L222I 0.40 tolerated(0.79) possibly_damaging(0.591) TCGA-XK-AAIW-01 11 56468348 56468348 C T OR9G1 Missense_Mutation p.T162M 0.20 tolerated(0.05) probably_damaging(0.977) TCGA-XK-AAIW-01 11 5686330 5686330 G A TRIM5 Silent p.Y397Y 0.36 TCGA-XK-AAIW-01 11 57003519 57003519 G C APLNR Missense_Mutation p.C320W 0.33 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 57003781 57003781 C T APLNR Missense_Mutation p.R233H 0.47 tolerated(0.2) benign(0.035) TCGA-XK-AAIW-01 11 5701287 5701287 C T TRIM5 Missense_Mutation p.A41T 0.41 tolerated(0.17) possibly_damaging(0.6) TCGA-XK-AAIW-01 11 57077271 57077271 C T TNKS1BP1 Missense_Mutation p.A972T 0.18 tolerated(0.45) benign(0.001) TCGA-XK-AAIW-01 11 57087833 57087833 G A TNKS1BP1 Missense_Mutation p.R150C 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 57095226 57095226 G A SSRP1 Missense_Mutation p.A581V 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 57099223 57099223 C T SSRP1 Missense_Mutation p.R381H 0.48 deleterious(0.02) possibly_damaging(0.638) TCGA-XK-AAIW-01 11 57137383 57137383 G A P2RX3 Silent p.A369A 0.31 TCGA-XK-AAIW-01 11 57147265 57147266 - G PRG3 Frame_Shift_Ins p.H26Pfs*17 0.20 TCGA-XK-AAIW-01 11 57268766 57268766 C T SLC43A1 Missense_Mutation p.R64H 0.15 tolerated(0.24) benign(0) TCGA-XK-AAIW-01 11 57367677 57367677 C A SERPING1 Missense_Mutation p.P126H 0.36 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 11 57466485 57466485 G A ZDHHC5 Missense_Mutation p.R526Q 0.35 deleterious(0.03) benign(0.257) TCGA-XK-AAIW-01 11 57505473 57505473 C T TMX2 Silent p.G113G 0.47 TCGA-XK-AAIW-01 11 57509713 57509713 T G C11orf31 3'UTR 0.67 TCGA-XK-AAIW-01 11 57798998 57798998 T C OR6Q1 Missense_Mutation p.S192P 0.09 deleterious(0) possibly_damaging(0.697) TCGA-XK-AAIW-01 11 581559 581559 C T PHRF1 Missense_Mutation p.P16L 0.35 tolerated(0.15) benign(0.025) TCGA-XK-AAIW-01 11 58206930 58206930 C T OR5B12 Missense_Mutation p.R232H 0.47 tolerated_low_confidence(0.58) benign(0.003) TCGA-XK-AAIW-01 11 5842294 5842294 C T OR52N2 Silent p.C243C 0.38 TCGA-XK-AAIW-01 11 58602079 58602079 G A GLYATL2 Silent p.G236G 0.22 TCGA-XK-AAIW-01 11 5862274 5862274 G T OR52E6 Missense_Mutation p.P285H 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 5862948 5862948 G T OR52E6 Silent p.P60P 0.36 TCGA-XK-AAIW-01 11 58921007 58921007 G A FAM111A 3'UTR 0.46 TCGA-XK-AAIW-01 11 59211466 59211466 G T OR5A1 Missense_Mutation p.K275N 0.45 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 11 59245449 59245449 C T OR4D10 Missense_Mutation p.R183W 0.14 deleterious(0) possibly_damaging(0.601) TCGA-XK-AAIW-01 11 59271436 59271436 C A OR4D11 Missense_Mutation p.L130M 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 59609965 59609965 G A GIF Silent p.A154A 0.38 TCGA-XK-AAIW-01 11 597506 597506 G A PHRF1 Missense_Mutation p.R277Q 0.47 deleterious(0.01) benign(0.119) TCGA-XK-AAIW-01 11 59940468 59940468 G T MS4A6A 3'UTR 0.39 TCGA-XK-AAIW-01 11 60215171 60215171 C A MS4A5 Missense_Mutation p.S181Y 0.37 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 11 60482851 60482851 A G MS4A8 Silent p.P239P 0.45 TCGA-XK-AAIW-01 11 60643128 60643128 G A ZP1 Silent p.%3D 0.30 TCGA-XK-AAIW-01 11 61079290 61079290 C T DDB1 Missense_Mutation p.G748D 0.31 tolerated(0.45) benign(0.027) TCGA-XK-AAIW-01 11 61131887 61131887 C A TMEM138 Missense_Mutation p.L9M 0.13 tolerated(0.14) probably_damaging(0.98) TCGA-XK-AAIW-01 11 61405066 61405066 G A RPLP0P2 RNA 0.45 TCGA-XK-AAIW-01 11 61496403 61496403 G A DAGLA Missense_Mutation p.A258T 0.32 tolerated(0.21) possibly_damaging(0.76) TCGA-XK-AAIW-01 11 61537762 61537762 G A MYRF Missense_Mutation p.V169M 0.43 tolerated(0.96) benign(0.043) TCGA-XK-AAIW-01 11 61544762 61544762 C T MYRF Silent p.S539S 0.36 TCGA-XK-AAIW-01 11 61570338 61570338 C T FADS1 Silent p.L463L 0.22 TCGA-XK-AAIW-01 11 61583828 61583828 C A FADS1 Intron 0.38 TCGA-XK-AAIW-01 11 617465 617465 C T CDHR5 Silent p.A808A 0.32 TCGA-XK-AAIW-01 11 61908487 61908487 C T INCENP Missense_Mutation p.R522C 0.30 deleterious(0) unknown(0) TCGA-XK-AAIW-01 11 61912668 61912668 G A INCENP Silent p.V581V 0.42 TCGA-XK-AAIW-01 11 6191393 6191393 C T OR52B2 Missense_Mutation p.R55H 0.38 tolerated(0.19) benign(0.003) TCGA-XK-AAIW-01 11 61981255 61981255 C T SCGB2A1 3'UTR 0.30 TCGA-XK-AAIW-01 11 62156640 62156640 G A ASRGL1 Missense_Mutation p.C176Y 0.44 tolerated(0.48) benign(0.1) TCGA-XK-AAIW-01 11 62189771 62189771 C T SCGB1A1 Missense_Mutation p.A45V 0.32 deleterious(0.01) probably_damaging(0.918) TCGA-XK-AAIW-01 11 62284495 62284495 C T AHNAK Silent p.T5798T 0.38 TCGA-XK-AAIW-01 11 62289163 62289163 G A AHNAK Silent p.G4242G 0.41 TCGA-XK-AAIW-01 11 62290971 62290971 C T AHNAK Missense_Mutation p.V3640I 0.40 benign(0.208) TCGA-XK-AAIW-01 11 62291032 62291032 G A AHNAK Silent p.G3619G 0.16 TCGA-XK-AAIW-01 11 62294559 62294559 G A AHNAK Missense_Mutation p.P2444S 0.41 benign(0.396) TCGA-XK-AAIW-01 11 62298776 62298776 G A AHNAK Missense_Mutation p.A1038V 0.36 benign(0.044) TCGA-XK-AAIW-01 11 62327564 62327564 G A EEF1G Nonsense_Mutation p.R378* 0.35 TCGA-XK-AAIW-01 11 62370296 62370296 C T EML3 Missense_Mutation p.V808M 0.20 tolerated(0.09) benign(0.295) TCGA-XK-AAIW-01 11 62381330 62381330 C T ROM1 Missense_Mutation p.R193W 0.23 deleterious(0) possibly_damaging(0.733) TCGA-XK-AAIW-01 11 62396361 62396361 C T GANAB Nonsense_Mutation p.W709* 0.28 TCGA-XK-AAIW-01 11 62397734 62397734 G A GANAB Missense_Mutation p.P532S 0.41 deleterious(0.02) possibly_damaging(0.461) TCGA-XK-AAIW-01 11 62397885 62397885 C A GANAB Silent p.R515R 0.47 TCGA-XK-AAIW-01 11 62415513 62415513 G A INTS5 Missense_Mutation p.T680I 0.25 tolerated(0.38) benign(0.001) TCGA-XK-AAIW-01 11 62415761 62415761 C T INTS5 Silent p.A597A 0.24 TCGA-XK-AAIW-01 11 62417078 62417078 C T INTS5 Silent p.T158T 0.46 TCGA-XK-AAIW-01 11 62417235 62417235 G T INTS5 Missense_Mutation p.P106H 0.38 deleterious_low_confidence(0.02) benign(0.039) TCGA-XK-AAIW-01 11 62445452 62445452 C T UBXN1 Missense_Mutation p.M143I 0.34 tolerated(0.07) benign(0.012) TCGA-XK-AAIW-01 11 6245335 6245335 C T FAM160A2 Silent p.G94G 0.38 TCGA-XK-AAIW-01 11 62458343 62458343 C T BSCL2 Intron 0.43 TCGA-XK-AAIW-01 11 62458558 62458558 G A BSCL2 Missense_Mutation p.A354V 0.40 tolerated(0.21) benign(0.034) TCGA-XK-AAIW-01 11 62505762 62505762 G A TTC9C Missense_Mutation p.A142T 0.30 tolerated(1) benign(0.009) TCGA-XK-AAIW-01 11 62519768 62519768 G A ZBTB3 Missense_Mutation p.R507W 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 6261461 6261461 G A CNGA4 Missense_Mutation p.R146H 0.16 tolerated(0.07) probably_damaging(0.991) TCGA-XK-AAIW-01 11 62768217 62768217 G T SLC22A8 Missense_Mutation p.L138I 0.44 tolerated(0.96) benign(0.01) TCGA-XK-AAIW-01 11 62910984 62910984 G A SLC22A24 Missense_Mutation p.R90C 0.36 deleterious(0.02) possibly_damaging(0.497) TCGA-XK-AAIW-01 11 63764623 63764623 G A OTUB1 Silent p.L175L 0.19 TCGA-XK-AAIW-01 11 63885605 63885605 G A FLRT1 Silent p.L622L 0.35 TCGA-XK-AAIW-01 11 63974967 63974967 G A FERMT3 Missense_Mutation p.G44E 0.33 deleterious(0) possibly_damaging(0.873) TCGA-XK-AAIW-01 11 63990633 63990633 A G FERMT3 Missense_Mutation p.Q599R 0.42 tolerated(0.1) possibly_damaging(0.798) TCGA-XK-AAIW-01 11 640482 640482 G A DRD4 Missense_Mutation p.R380Q 0.40 tolerated(0.72) benign(0.147) TCGA-XK-AAIW-01 11 64074903 64074903 C T ESRRA Silent p.D84D 0.33 TCGA-XK-AAIW-01 11 64120867 64120867 G T CCDC88B Missense_Mutation p.Q1244H 0.30 tolerated(1) benign(0.109) TCGA-XK-AAIW-01 11 64121263 64121263 C T CCDC88B Missense_Mutation p.P1304S 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 64132774 64132774 G A RPS6KA4 Missense_Mutation p.G303D 0.50 tolerated(0.33) benign(0.022) TCGA-XK-AAIW-01 11 6415469 6415469 T C SMPD1 Missense_Mutation p.S510P 0.39 deleterious(0.04) probably_damaging(0.96) TCGA-XK-AAIW-01 11 6432426 6432426 C T APBB1 Missense_Mutation p.R51H 0.40 tolerated(0.15) probably_damaging(0.923) TCGA-XK-AAIW-01 11 64359171 64359171 G A SLC22A12 Missense_Mutation p.R48H 0.34 tolerated(0.26) possibly_damaging(0.715) TCGA-XK-AAIW-01 11 64368360 64368360 C T SLC22A12 Silent p.P516P 0.30 TCGA-XK-AAIW-01 11 64410041 64410041 G A NRXN2 Intron 0.40 TCGA-XK-AAIW-01 11 64504445 64504445 C T RASGRP2 Missense_Mutation p.R292Q 0.42 tolerated(0.22) benign(0.389) TCGA-XK-AAIW-01 11 64519438 64519438 G A PYGM Nonsense_Mutation p.R576* 0.30 TCGA-XK-AAIW-01 11 6452617 6452617 C T HPX Missense_Mutation p.G405R 0.38 deleterious(0) possibly_damaging(0.898) TCGA-XK-AAIW-01 11 64569094 64569094 C A MAP4K2 Splice_Site p.X139_splice 0.43 TCGA-XK-AAIW-01 11 64572519 64572519 C T MEN1 Missense_Mutation p.R451H 0.23 deleterious(0) probably_damaging(0.974) TCGA-XK-AAIW-01 11 64575422 64575422 G A MEN1 Missense_Mutation p.H204Y 0.40 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 11 64594813 64594813 C T CDC42BPG Missense_Mutation p.R1403H 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 11 64606548 64606548 G T CDC42BPG Missense_Mutation p.A278D 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 64627628 64627628 T C EHD1 Missense_Mutation p.Q228R 0.53 deleterious(0.05) benign(0.011) TCGA-XK-AAIW-01 11 64665161 64665161 G A ATG2A Silent p.H1683H 0.48 TCGA-XK-AAIW-01 11 64678411 64678411 G A ATG2A Silent p.A494A 0.53 TCGA-XK-AAIW-01 11 64678561 64678561 A G ATG2A Missense_Mutation p.F472S 0.23 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 11 64678617 64678617 C T ATG2A Silent p.T453T 0.45 TCGA-XK-AAIW-01 11 6478687 6478687 C T TRIM3 Missense_Mutation p.A179T 0.29 deleterious(0) possibly_damaging(0.637) TCGA-XK-AAIW-01 11 64847156 64847156 G T CDCA5 Missense_Mutation p.P116H 0.47 deleterious(0.03) probably_damaging(1) TCGA-XK-AAIW-01 11 64974115 64974115 G A CAPN1 Missense_Mutation p.R512H 0.35 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 11 65004274 65004274 G A SLC22A20 RNA 0.25 TCGA-XK-AAIW-01 11 65047044 65047044 C T POLA2 Missense_Mutation p.L231F 0.46 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 11 65088567 65088567 G A CDC42EP2 Silent p.P66P 0.31 TCGA-XK-AAIW-01 11 65123835 65123835 C T TIGD3 Missense_Mutation p.P186S 0.42 tolerated(0.09) probably_damaging(0.983) TCGA-XK-AAIW-01 11 65144483 65144483 G A SLC25A45 Missense_Mutation p.A135V 0.14 tolerated(0.16) benign(0.008) TCGA-XK-AAIW-01 11 65269670 65269670 G A MALAT1 RNA 0.32 TCGA-XK-AAIW-01 11 65298235 65298235 G A SCYL1 Missense_Mutation p.V329I 0.36 tolerated(0.22) benign(0.025) TCGA-XK-AAIW-01 11 65302765 65302765 C T SCYL1 Missense_Mutation p.A433V 0.11 deleterious(0.04) possibly_damaging(0.677) TCGA-XK-AAIW-01 11 65303494 65303494 C T SCYL1 Missense_Mutation p.A486V 0.22 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 11 65315230 65315230 C T LTBP3 Missense_Mutation p.G637S 0.64 deleterious(0.04) benign(0.104) TCGA-XK-AAIW-01 11 65341082 65341082 G A FAM89B Nonsense_Mutation p.W180* 0.31 TCGA-XK-AAIW-01 11 65386062 65386062 G A PCNXL3 Missense_Mutation p.R410Q 0.53 tolerated(0.1) benign(0.186) TCGA-XK-AAIW-01 11 65392916 65392916 C T PCNXL3 Missense_Mutation p.R1024C 0.37 deleterious(0.04) possibly_damaging(0.786) TCGA-XK-AAIW-01 11 65393124 65393124 G A PCNXL3 Missense_Mutation p.R1046H 0.22 deleterious(0.01) benign(0.09) TCGA-XK-AAIW-01 11 65401666 65401666 G A PCNXL3 Missense_Mutation p.A1514T 0.42 tolerated(0.1) benign(0.165) TCGA-XK-AAIW-01 11 65408562 65408562 C T SIPA1 Missense_Mutation p.A57V 0.44 tolerated(0.13) benign(0.038) TCGA-XK-AAIW-01 11 65409031 65409031 C T SIPA1 Silent p.D213D 0.32 TCGA-XK-AAIW-01 11 65412536 65412536 C A SIPA1 Silent p.T365T 0.30 TCGA-XK-AAIW-01 11 65413816 65413816 C T SIPA1 Missense_Mutation p.A463V 0.48 tolerated(1) benign(0.024) TCGA-XK-AAIW-01 11 65426220 65426220 C A RELA Missense_Mutation p.E211D 0.09 deleterious(0) probably_damaging(0.921) TCGA-XK-AAIW-01 11 65562113 65562113 C T OVOL1 Silent p.N141N 0.34 TCGA-XK-AAIW-01 11 65633303 65633303 C A MUS81 Silent p.A509A 0.32 TCGA-XK-AAIW-01 11 65634517 65634517 C T EFEMP2 Missense_Mutation p.A402T 0.28 tolerated(0.97) benign(0.011) TCGA-XK-AAIW-01 11 65649991 65649991 G A CTSW Missense_Mutation p.V178M 0.38 deleterious(0.01) probably_damaging(0.975) TCGA-XK-AAIW-01 11 65650136 65650136 G A CTSW Missense_Mutation p.A199T 0.20 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 65688934 65688934 C A DRAP1 3'UTR 0.22 TCGA-XK-AAIW-01 11 6588935 6588935 C T DNHD1 Missense_Mutation p.R4066W 0.18 possibly_damaging(0.478) TCGA-XK-AAIW-01 11 65960985 65960985 G A PACS1 Missense_Mutation p.V129I 0.34 tolerated(0.2) benign(0.002) TCGA-XK-AAIW-01 11 66031140 66031140 C T KLC2 Silent p.N254N 0.44 TCGA-XK-AAIW-01 11 66102431 66102431 C T RIN1 Missense_Mutation p.R280Q 0.36 tolerated(0.07) benign(0.165) TCGA-XK-AAIW-01 11 66108293 66108293 G A BRMS1 Missense_Mutation p.R163W 0.44 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 11 66114449 66114449 C T B3GNT1 Missense_Mutation p.A190T 0.21 tolerated(0.46) benign(0.082) TCGA-XK-AAIW-01 11 66190620 66190620 G A NPAS4 Missense_Mutation p.R242H 0.47 tolerated(0.17) benign(0.005) TCGA-XK-AAIW-01 11 66191876 66191876 C A NPAS4 Silent p.T505T 0.40 TCGA-XK-AAIW-01 11 66203543 66203543 C T MRPL11 Missense_Mutation p.A172T 0.44 tolerated(0.07) benign(0.099) TCGA-XK-AAIW-01 11 66259054 66259054 C T DPP3 Silent p.G296G 0.41 TCGA-XK-AAIW-01 11 66259059 66259059 G A DPP3 Missense_Mutation p.R298H 0.52 deleterious(0.02) benign(0.085) TCGA-XK-AAIW-01 11 6631830 6631830 G A ILK Missense_Mutation p.M449I 0.40 deleterious(0) probably_damaging(0.944) TCGA-XK-AAIW-01 11 66329000 66329000 G T CTSF 3'Flank 0.40 TCGA-XK-AAIW-01 11 66333587 66333587 C T CTSF Missense_Mutation p.G258D 0.34 tolerated(0.62) benign(0.01) TCGA-XK-AAIW-01 11 66358114 66358114 C A CCDC87 Missense_Mutation p.E791D 0.33 deleterious(0.02) probably_damaging(0.949) TCGA-XK-AAIW-01 11 66358932 66358932 C A CCDC87 Missense_Mutation p.A519S 0.43 tolerated(0.16) benign(0.012) TCGA-XK-AAIW-01 11 66359023 66359023 G A CCDC87 Silent p.G488G 0.36 TCGA-XK-AAIW-01 11 6638248 6638248 G A TPP1 Silent p.D215D 0.53 TCGA-XK-AAIW-01 11 66392897 66392897 G A RBM14 Missense_Mutation p.R517H 0.28 deleterious(0.02) unknown(0) TCGA-XK-AAIW-01 11 66393086 66393086 G A RBM14 Missense_Mutation p.R580H 0.42 deleterious(0) unknown(0) TCGA-XK-AAIW-01 11 6640086 6640086 G T TPP1 Silent p.T50T 0.46 TCGA-XK-AAIW-01 11 6640450 6640450 G A TPP1 Silent p.S22S 0.35 TCGA-XK-AAIW-01 11 66436508 66436508 G A RBM4B Nonsense_Mutation p.R223* 0.42 TCGA-XK-AAIW-01 11 66453704 66453704 G A SPTBN2 Intron 0.31 TCGA-XK-AAIW-01 11 66458794 66458794 G A SPTBN2 Silent p.H1842H 0.37 TCGA-XK-AAIW-01 11 66461832 66461832 C T SPTBN2 Missense_Mutation p.M1427I 0.35 tolerated(0.27) probably_damaging(0.968) TCGA-XK-AAIW-01 11 6646561 6646561 G A DCHS1 Silent p.D2338D 0.52 TCGA-XK-AAIW-01 11 66475239 66475239 G A SPTBN2 Silent p.H467H 0.11 TCGA-XK-AAIW-01 11 66620277 66620277 G A PC Missense_Mutation p.P515L 0.18 tolerated(0.15) benign(0.023) TCGA-XK-AAIW-01 11 66834253 66834253 G A RHOD Missense_Mutation p.A89T 0.37 tolerated(0.85) probably_damaging(1) TCGA-XK-AAIW-01 11 67018239 67018239 G A KDM2A Missense_Mutation p.C913Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 67072293 67072293 G A SSH3 Missense_Mutation p.G52R 0.18 tolerated(0.05) benign(0.007) TCGA-XK-AAIW-01 11 67072437 67072437 C A SSH3 Missense_Mutation p.L100I 0.24 tolerated(0.21) possibly_damaging(0.672) TCGA-XK-AAIW-01 11 67163738 67163738 G A RAD9A Missense_Mutation p.A247T 0.39 tolerated(0.08) probably_damaging(0.943) TCGA-XK-AAIW-01 11 67201898 67201898 G A RPS6KB2 Silent p.T366T 0.32 TCGA-XK-AAIW-01 11 67203470 67203470 C T PTPRCAP Missense_Mutation p.A119T 0.36 tolerated(0.57) benign(0.002) TCGA-XK-AAIW-01 11 67206326 67206326 G A CORO1B Missense_Mutation p.P387L 0.25 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 67223812 67223812 G A CABP4 Missense_Mutation p.G147D 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 67235040 67235040 G A TMEM134 Silent p.I87I 0.29 TCGA-XK-AAIW-01 11 67260513 67260513 G A PITPNM1 Silent p.A1121A 0.34 TCGA-XK-AAIW-01 11 67265031 67265031 G A PITPNM1 Silent p.S634S 0.38 TCGA-XK-AAIW-01 11 67267630 67267630 G A PITPNM1 Silent p.P301P 0.45 TCGA-XK-AAIW-01 11 67269354 67269354 C T PITPNM1 Missense_Mutation p.E207K 0.40 deleterious(0) possibly_damaging(0.662) TCGA-XK-AAIW-01 11 67270021 67270021 G A PITPNM1 Nonsense_Mutation p.Q83* 0.44 TCGA-XK-AAIW-01 11 67352222 67352222 C T GSTP1 Missense_Mutation p.R71C 0.19 deleterious(0.04) probably_damaging(0.942) TCGA-XK-AAIW-01 11 67400480 67400480 A G TBX10 Missense_Mutation p.F215S 0.39 deleterious(0) possibly_damaging(0.705) TCGA-XK-AAIW-01 11 67431903 67431903 C T ALDH3B2 Silent p.K279K 0.40 TCGA-XK-AAIW-01 11 67770520 67770520 C T UNC93B1 Missense_Mutation p.A122T 0.23 deleterious(0.01) possibly_damaging(0.545) TCGA-XK-AAIW-01 11 67815372 67815372 C T TCIRG1 Missense_Mutation p.T496M 0.35 tolerated(0.06) benign(0.01) TCGA-XK-AAIW-01 11 67925797 67925797 G A SUV420H1 Silent p.P672P 0.43 TCGA-XK-AAIW-01 11 68029279 68029279 G A C11orf24 Missense_Mutation p.A395V 0.36 deleterious(0.01) possibly_damaging(0.866) TCGA-XK-AAIW-01 11 68154117 68154117 G A LRP5 Missense_Mutation p.R450H 0.39 deleterious(0) probably_damaging(0.969) TCGA-XK-AAIW-01 11 68205926 68205926 C T LRP5 Missense_Mutation p.P1375L 0.28 tolerated(0.2) benign(0.002) TCGA-XK-AAIW-01 11 68456356 68456356 G A GAL Missense_Mutation p.R88H 0.43 tolerated(0.39) benign(0.086) TCGA-XK-AAIW-01 11 68678939 68678939 C T IGHMBP2 Silent p.D193D 0.40 TCGA-XK-AAIW-01 11 686974 686974 G A DEAF1 Nonsense_Mutation p.Q230* 0.44 TCGA-XK-AAIW-01 11 70007391 70007391 C T ANO1 Missense_Mutation p.A568V 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 70009407 70009407 C T ANO1 Silent p.G637G 0.32 TCGA-XK-AAIW-01 11 70031740 70031740 A G ANO1 Missense_Mutation p.D878G 0.19 tolerated(0.11) probably_damaging(0.96) TCGA-XK-AAIW-01 11 7021457 7021457 T C ZNF214 Missense_Mutation p.H486R 0.51 tolerated(0.09) benign(0.018) TCGA-XK-AAIW-01 11 7022150 7022150 C T ZNF214 Missense_Mutation p.C255Y 0.32 tolerated(1) benign(0.025) TCGA-XK-AAIW-01 11 70265948 70265948 A G CTTN Missense_Mutation p.H222R 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-XK-AAIW-01 11 70331557 70331557 G A SHANK2 Missense_Mutation p.P1615L 0.39 deleterious(0.04) possibly_damaging(0.726) TCGA-XK-AAIW-01 11 70332444 70332444 G A SHANK2 Silent p.T1319T 0.40 TCGA-XK-AAIW-01 11 70333321 70333321 G A SHANK2 Missense_Mutation p.T1027M 0.41 deleterious(0) benign(0.134) TCGA-XK-AAIW-01 11 70333465 70333465 C T SHANK2 Missense_Mutation p.R979H 0.44 tolerated(0.09) possibly_damaging(0.658) TCGA-XK-AAIW-01 11 70338440 70338440 G A SHANK2 Silent p.N814N 0.37 TCGA-XK-AAIW-01 11 7059988 7059988 C T NLRP14 Silent p.D57D 0.29 TCGA-XK-AAIW-01 11 7060964 7060964 A G NLRP14 Silent p.G103G 0.29 TCGA-XK-AAIW-01 11 7064751 7064751 G A NLRP14 Nonsense_Mutation p.W498* 0.32 TCGA-XK-AAIW-01 11 7067910 7067910 G A NLRP14 Missense_Mutation p.R657H 0.40 tolerated(0.8) benign(0.001) TCGA-XK-AAIW-01 11 7111074 7111074 C T RBMXL2 Silent p.R241R 0.32 TCGA-XK-AAIW-01 11 71146658 71146658 C T DHCR7 Silent p.S397S 0.39 TCGA-XK-AAIW-01 11 71155238 71155238 G A DHCR7 Missense_Mutation p.A41V 0.56 tolerated(0.73) benign(0.013) TCGA-XK-AAIW-01 11 71169582 71169582 C T NADSYN1 Silent p.D85D 0.42 TCGA-XK-AAIW-01 11 71193052 71193052 C T NADSYN1 Silent p.C377C 0.38 TCGA-XK-AAIW-01 11 71725245 71725245 C T NUMA1 Missense_Mutation p.A1102T 0.41 benign(0.003) TCGA-XK-AAIW-01 11 71725527 71725527 G A NUMA1 Missense_Mutation p.R1008W 0.31 probably_damaging(1) TCGA-XK-AAIW-01 11 71725990 71725990 C A NUMA1 Missense_Mutation p.K853N 0.14 possibly_damaging(0.798) TCGA-XK-AAIW-01 11 71850454 71850454 C T FOLR3 Missense_Mutation p.R183C 0.58 deleterious(0.02) benign(0.112) TCGA-XK-AAIW-01 11 71903288 71903288 C T FOLR1 Missense_Mutation p.T24I 0.43 tolerated(0.34) benign(0.005) TCGA-XK-AAIW-01 11 72004335 72004335 G T CLPB 3'UTR 0.36 TCGA-XK-AAIW-01 11 72406494 72406494 C T ARAP1 Missense_Mutation p.G1172S 0.39 deleterious(0) possibly_damaging(0.539) TCGA-XK-AAIW-01 11 72470359 72470359 C T STARD10 Missense_Mutation p.R92H 0.33 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 11 72554562 72554562 C T FCHSD2 Missense_Mutation p.E487K 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 72945705 72945705 C T P2RY2 Silent p.P167P 0.46 TCGA-XK-AAIW-01 11 72945789 72945789 C T P2RY2 Silent p.F195F 0.38 TCGA-XK-AAIW-01 11 72945874 72945874 C T P2RY2 Nonsense_Mutation p.R224* 0.32 TCGA-XK-AAIW-01 11 72946149 72946149 C A P2RY2 Silent p.R315R 0.44 TCGA-XK-AAIW-01 11 72946266 72946266 C T P2RY2 Silent p.G354G 0.30 TCGA-XK-AAIW-01 11 73008421 73008421 G A P2RY6 Silent p.T286T 0.41 TCGA-XK-AAIW-01 11 73020418 73020418 T C ARHGEF17 Silent p.S245S 0.40 TCGA-XK-AAIW-01 11 73021272 73021272 C T ARHGEF17 Missense_Mutation p.T530M 0.29 tolerated_low_confidence(0.1) benign(0.115) TCGA-XK-AAIW-01 11 73071497 73071497 G A ARHGEF17 Missense_Mutation p.D1447N 0.42 deleterious(0.02) possibly_damaging(0.669) TCGA-XK-AAIW-01 11 73075239 73075239 G A ARHGEF17 Missense_Mutation p.V1786M 0.45 deleterious(0) possibly_damaging(0.511) TCGA-XK-AAIW-01 11 73076578 73076578 C T ARHGEF17 Silent p.D1898D 0.42 TCGA-XK-AAIW-01 11 73078897 73078897 G A ARHGEF17 3'UTR 0.33 TCGA-XK-AAIW-01 11 73103308 73103308 C T RELT Silent p.S140S 0.39 TCGA-XK-AAIW-01 11 73105729 73105729 C T RELT Silent p.A332A 0.23 TCGA-XK-AAIW-01 11 73106541 73106541 C T RELT 3'UTR 0.32 TCGA-XK-AAIW-01 11 7334785 7334785 G A SYT9 Silent p.K219K 0.39 TCGA-XK-AAIW-01 11 73662152 73662152 G A DNAJB13 Missense_Mutation p.R13H 0.25 tolerated(0.06) benign(0.24) TCGA-XK-AAIW-01 11 73834034 73834034 G A C2CD3 Missense_Mutation p.P455L 0.35 tolerated(0.08) benign(0.093) TCGA-XK-AAIW-01 11 74009328 74009328 C T P4HA3 Missense_Mutation p.G216R 0.32 tolerated(0.08) possibly_damaging(0.873) TCGA-XK-AAIW-01 11 74407619 74407619 C T CHRDL2 Missense_Mutation p.R427H 0.41 tolerated_low_confidence(0.36) benign(0) TCGA-XK-AAIW-01 11 74415650 74415650 G A CHRDL2 Missense_Mutation p.P211L 0.46 tolerated(0.86) benign(0.009) TCGA-XK-AAIW-01 11 74554403 74554403 G A XRRA1 Missense_Mutation p.R741W 0.54 deleterious(0) possibly_damaging(0.901) TCGA-XK-AAIW-01 11 74987953 74987953 G A ARRB1 Missense_Mutation p.R236C 0.43 deleterious(0.01) probably_damaging(0.969) TCGA-XK-AAIW-01 11 75155510 75155510 G A GDPD5 Missense_Mutation p.R249W 0.35 deleterious(0) possibly_damaging(0.67) TCGA-XK-AAIW-01 11 75277586 75277586 G T SERPINH1 Silent p.V64V 0.69 TCGA-XK-AAIW-01 11 75507443 75507443 G A DGAT2 Missense_Mutation p.G167D 0.37 deleterious(0.02) possibly_damaging(0.864) TCGA-XK-AAIW-01 11 764952 764952 G T TALDO1 3'UTR 0.31 TCGA-XK-AAIW-01 11 7672925 7672925 G A PPFIBP2 Missense_Mutation p.M762I 0.42 deleterious(0.02) benign(0.141) TCGA-XK-AAIW-01 11 7673019 7673019 C T PPFIBP2 Nonsense_Mutation p.R794* 0.53 TCGA-XK-AAIW-01 11 7674414 7674414 C A PPFIBP2 Missense_Mutation p.L866M 0.35 deleterious(0.01) possibly_damaging(0.474) TCGA-XK-AAIW-01 11 76905558 76905558 G A MYO7A Missense_Mutation p.A1438T 0.33 tolerated(0.07) benign(0.044) TCGA-XK-AAIW-01 11 771069 771069 G A PDDC1 Missense_Mutation p.R194C 0.67 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 771350 771350 G A PDDC1 Missense_Mutation p.S176L 0.45 tolerated(0.14) benign(0.017) TCGA-XK-AAIW-01 11 77336825 77336825 C T CLNS1A Missense_Mutation p.D101N 0.31 tolerated(0.18) benign(0.061) TCGA-XK-AAIW-01 11 77918623 77918623 T G USP35 Missense_Mutation p.L480R 0.45 deleterious(0) unknown(0) TCGA-XK-AAIW-01 11 77961318 77961318 G A GAB2 Silent p.L169L 0.35 TCGA-XK-AAIW-01 11 78468006 78468006 G A TENM4 Missense_Mutation p.P867L 0.20 tolerated(0.28) benign(0) TCGA-XK-AAIW-01 11 800378 800378 G A PIDD Silent p.Y705Y 0.37 TCGA-XK-AAIW-01 11 8013378 8013378 C T EIF3F Missense_Mutation p.H139Y 0.27 tolerated(0.05) benign(0.4) TCGA-XK-AAIW-01 11 8017564 8017564 C A EIF3F Missense_Mutation p.L357M 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-XK-AAIW-01 11 8115637 8115637 C T TUB Missense_Mutation p.R155C 0.23 deleterious(0.04) benign(0.401) TCGA-XK-AAIW-01 11 8159977 8159977 G A RIC3 Intron 0.23 TCGA-XK-AAIW-01 11 82698794 82698794 C T RAB30 Missense_Mutation p.A66T 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 82879713 82879713 G A PCF11 Missense_Mutation p.R779Q 0.33 tolerated(0.06) probably_damaging(0.961) TCGA-XK-AAIW-01 11 82880022 82880022 G A PCF11 Missense_Mutation p.R882H 0.43 tolerated(0.17) benign(0.006) TCGA-XK-AAIW-01 11 82972834 82972834 T C CCDC90B 3'UTR 0.23 TCGA-XK-AAIW-01 11 840265 840265 C T POLR2L 3'UTR 0.26 TCGA-XK-AAIW-01 11 8414021 8414021 G A STK33 3'UTR 0.37 TCGA-XK-AAIW-01 11 85988974 85988974 C T EED Silent p.G380G 0.35 TCGA-XK-AAIW-01 11 86519563 86519563 G A PRSS23 Missense_Mutation p.R293H 0.17 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 86662967 86662967 C T FZD4 Silent p.R277R 0.52 TCGA-XK-AAIW-01 11 870159 870159 G A CHID1 Missense_Mutation p.R374C 0.29 deleterious(0.01) possibly_damaging(0.729) TCGA-XK-AAIW-01 11 88027111 88027111 G A CTSC 3'UTR 0.38 TCGA-XK-AAIW-01 11 88300321 88300321 G A GRM5 Missense_Mutation p.R844C 0.38 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 11 88300528 88300528 C T GRM5 Missense_Mutation p.A775T 0.35 deleterious(0) probably_damaging(0.96) TCGA-XK-AAIW-01 11 883189 883189 G A CHID1 Silent p.Y331Y 0.32 TCGA-XK-AAIW-01 11 88386359 88386359 C T GRM5 Missense_Mutation p.S375N 0.32 tolerated(0.56) benign(0.006) TCGA-XK-AAIW-01 11 8942944 8942944 C T C11orf16 Silent p.P441P 0.35 TCGA-XK-AAIW-01 11 8948699 8948699 A G C11orf16 Missense_Mutation p.L116P 0.39 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 11 8953852 8953852 C T C11orf16 Missense_Mutation p.E2K 0.43 tolerated(0.09) benign(0.12) TCGA-XK-AAIW-01 11 89774359 89774359 C T TRIM49C Nonsense_Mutation p.Q334* 0.30 TCGA-XK-AAIW-01 11 89935530 89935530 A - CHORDC1 3'UTR 0.19 TCGA-XK-AAIW-01 11 9049017 9049017 C T SCUBE2 Silent p.T808T 0.38 TCGA-XK-AAIW-01 11 9173944 9173944 G A DENND5A Missense_Mutation p.R828W 0.41 deleterious(0.01) possibly_damaging(0.67) TCGA-XK-AAIW-01 11 92533703 92533703 C T FAT3 Silent p.N2508N 0.35 TCGA-XK-AAIW-01 11 92534270 92534270 C T FAT3 Silent p.H2697H 0.32 TCGA-XK-AAIW-01 11 92534794 92534794 C T FAT3 Missense_Mutation p.T2872M 0.52 probably_damaging(0.956) TCGA-XK-AAIW-01 11 92568221 92568221 G A FAT3 Missense_Mutation p.D3353N 0.37 possibly_damaging(0.84) TCGA-XK-AAIW-01 11 92616214 92616214 G A FAT3 Missense_Mutation p.A4198T 0.32 benign(0.31) TCGA-XK-AAIW-01 11 92714727 92714727 G A MTNR1B Missense_Mutation p.C113Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 11 92714946 92714946 G A MTNR1B Missense_Mutation p.R186H 0.38 tolerated(0.09) benign(0.373) TCGA-XK-AAIW-01 11 93127645 93127645 G A CCDC67 Silent p.Q354Q 0.30 TCGA-XK-AAIW-01 11 93463761 93463761 G A KIAA1731 3'Flank 0.37 TCGA-XK-AAIW-01 11 93466694 93466694 G A KIAA1731 3'Flank 0.45 TCGA-XK-AAIW-01 11 93800805 93800805 C T HEPHL1 Missense_Mutation p.H318Y 0.31 tolerated(0.21) probably_damaging(0.993) TCGA-XK-AAIW-01 11 94231249 94231249 C T ANKRD49 Missense_Mutation p.R91W 0.41 deleterious(0.01) possibly_damaging(0.67) TCGA-XK-AAIW-01 11 94278738 94278738 C T FUT4 Missense_Mutation p.A480V 0.40 tolerated(0.1) benign(0.096) TCGA-XK-AAIW-01 11 9430101 9430101 T C IPO7 Missense_Mutation p.S79P 0.40 tolerated(0.43) benign(0) TCGA-XK-AAIW-01 11 94862713 94862713 G T ENDOD1 Missense_Mutation p.K491N 0.18 deleterious(0) benign(0.305) TCGA-XK-AAIW-01 11 94918625 94918625 G T SESN3 Missense_Mutation p.S186Y 0.30 deleterious(0) benign(0.059) TCGA-XK-AAIW-01 11 9492877 9492877 C T ZNF143 Nonsense_Mutation p.R8* 0.30 TCGA-XK-AAIW-01 11 95532505 95532505 G A CEP57 Missense_Mutation p.R52H 0.06 tolerated(0.36) probably_damaging(0.994) TCGA-XK-AAIW-01 11 95598776 95598776 A G MTMR2 Missense_Mutation p.I84T 0.45 deleterious(0.03) benign(0.358) TCGA-XK-AAIW-01 11 95712519 95712519 G A MAML2 Missense_Mutation p.P1022S 0.37 unknown(0) TCGA-XK-AAIW-01 11 9608137 9608137 C T WEE1 Missense_Mutation p.L538F 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 11 96117750 96117750 C T CCDC82 Silent p.E54E 0.22 TCGA-XK-AAIW-01 11 9864204 9864204 C T SBF2 Missense_Mutation p.R1075H 0.20 tolerated(0.13) benign(0.025) TCGA-XK-AAIW-01 11 9878212 9878212 T C SBF2 Missense_Mutation p.E719G 0.38 deleterious(0) benign(0.032) TCGA-XK-AAIW-01 12 100219106 100219106 C T ANKS1B Missense_Mutation p.A66T 0.37 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 100433475 100433475 G A UHRF1BP1L Nonsense_Mutation p.Q1392* 0.34 TCGA-XK-AAIW-01 12 100452721 100452721 C T UHRF1BP1L Silent p.E778E 0.24 TCGA-XK-AAIW-01 12 100478400 100478400 G A UHRF1BP1L Missense_Mutation p.A381V 0.17 deleterious(0.05) possibly_damaging(0.677) TCGA-XK-AAIW-01 12 100613796 100613796 G A ACTR6 Silent p.P311P 0.11 TCGA-XK-AAIW-01 12 100732507 100732507 G T SCYL2 Nonsense_Mutation p.G783* 0.39 TCGA-XK-AAIW-01 12 101368636 101368636 T C ANO4 Missense_Mutation p.Y156H 0.42 tolerated(0.48) possibly_damaging(0.876) TCGA-XK-AAIW-01 12 10137627 10137627 G A CLEC12A 3'UTR 0.50 TCGA-XK-AAIW-01 12 10149866 10149866 C T CLEC1B Missense_Mutation p.R59H 0.21 tolerated(0.09) benign(0.001) TCGA-XK-AAIW-01 12 101702086 101702086 G A UTP20 Missense_Mutation p.V707I 0.32 tolerated(0.13) benign(0.057) TCGA-XK-AAIW-01 12 101727206 101727206 G A UTP20 Missense_Mutation p.G1182D 0.44 deleterious(0) benign(0.323) TCGA-XK-AAIW-01 12 101763627 101763627 C T UTP20 Silent p.A2171A 0.29 TCGA-XK-AAIW-01 12 10205327 10205327 G A CLEC9A Missense_Mutation p.S14N 0.45 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 12 102057262 102057262 G A MYBPC1 Silent p.T735T 0.11 TCGA-XK-AAIW-01 12 102122649 102122649 C T SYCP3 3'UTR 0.46 TCGA-XK-AAIW-01 12 102153878 102153879 - T GNPTAB Frame_Shift_Ins p.M1060Nfs*5 0.20 TCGA-XK-AAIW-01 12 102158675 102158675 G A GNPTAB Missense_Mutation p.R674C 0.20 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 12 102492967 102492967 G A NUP37 Silent p.G122G 0.36 TCGA-XK-AAIW-01 12 102572527 102572527 C T PARPBP Missense_Mutation p.T388M 0.34 tolerated(0.09) benign(0.02) TCGA-XK-AAIW-01 12 103696167 103696167 C T C12orf42 Missense_Mutation p.A268T 0.40 tolerated(0.26) benign(0.011) TCGA-XK-AAIW-01 12 104069709 104069709 T C STAB2 Silent p.C852C 0.40 TCGA-XK-AAIW-01 12 104089546 104089546 C T STAB2 Missense_Mutation p.A1169V 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 104121053 104121053 C T STAB2 Silent p.F1620F 0.08 TCGA-XK-AAIW-01 12 104140469 104140469 A G STAB2 Silent p.G2077G 0.27 TCGA-XK-AAIW-01 12 104336443 104336443 C T HSP90B1 Missense_Mutation p.R505C 0.13 deleterious(0) possibly_damaging(0.676) TCGA-XK-AAIW-01 12 104340404 104340404 C T HSP90B1 Missense_Mutation p.A679V 0.33 tolerated(0.14) benign(0.112) TCGA-XK-AAIW-01 12 104377098 104377098 A C TDG Missense_Mutation p.E241D 0.42 deleterious(0.03) benign(0.256) TCGA-XK-AAIW-01 12 104390558 104390558 G A GLT8D2 Silent p.C185C 0.55 TCGA-XK-AAIW-01 12 104476381 104476381 C T HCFC2 Silent p.L291L 0.40 TCGA-XK-AAIW-01 12 104517076 104517076 G A NFYB Silent p.L119L 0.41 TCGA-XK-AAIW-01 12 104709674 104709674 G C TXNRD1 Missense_Mutation p.V244L 0.46 tolerated(0.06) benign(0.327) TCGA-XK-AAIW-01 12 104721433 104721433 C T TXNRD1 Missense_Mutation p.A509V 0.43 deleterious(0) benign(0.135) TCGA-XK-AAIW-01 12 105462663 105462663 C A ALDH1L2 Splice_Site p.X143_splice 0.34 TCGA-XK-AAIW-01 12 10603748 10603748 T C KLRC1 Missense_Mutation p.N3S 0.37 deleterious(0.02) benign(0.057) TCGA-XK-AAIW-01 12 106633671 106633671 G T CKAP4 Missense_Mutation p.L314I 0.36 tolerated(0.74) benign(0.287) TCGA-XK-AAIW-01 12 106729832 106729832 G A TCP11L2 Missense_Mutation p.R328H 0.12 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 12 106770185 106770185 G A POLR3B Silent p.T151T 0.38 TCGA-XK-AAIW-01 12 106827517 106827517 C T POLR3B Nonsense_Mutation p.R550* 0.20 TCGA-XK-AAIW-01 12 106857351 106857351 G A POLR3B Missense_Mutation p.R889K 0.28 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 106995083 106995083 C T RFX4 Missense_Mutation p.A10V 0.22 tolerated_low_confidence(0.17) benign(0.001) TCGA-XK-AAIW-01 12 107075841 107075841 C T RFX4 Intron 0.17 TCGA-XK-AAIW-01 12 107078653 107078653 C T RFX4 Intron 0.39 TCGA-XK-AAIW-01 12 107080708 107080708 G A RFX4 Missense_Mutation p.D151N 0.38 tolerated(0.16) possibly_damaging(0.718) TCGA-XK-AAIW-01 12 10746521 10746521 T C KLRAP1 RNA 0.46 TCGA-XK-AAIW-01 12 108004005 108004005 C T BTBD11 Missense_Mutation p.A561V 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 12 108169399 108169399 T C ASCL4 Missense_Mutation p.L136P 0.30 tolerated(0.31) benign(0.001) TCGA-XK-AAIW-01 12 108169471 108169471 C T ASCL4 Missense_Mutation p.S160L 0.31 tolerated(0.3) unknown(0) TCGA-XK-AAIW-01 12 108685777 108685777 C A CMKLR1 Missense_Mutation p.Q321H 0.47 tolerated(0.08) benign(0.031) TCGA-XK-AAIW-01 12 108912734 108912734 A G FICD Missense_Mutation p.I287V 0.24 tolerated(0.88) benign(0.004) TCGA-XK-AAIW-01 12 109182100 109182100 G A SSH1 Silent p.S938S 0.46 TCGA-XK-AAIW-01 12 109182308 109182308 C T SSH1 Missense_Mutation p.G869D 0.40 tolerated_low_confidence(0.62) benign(0.005) TCGA-XK-AAIW-01 12 109625870 109625870 T C ACACB Missense_Mutation p.Y683H 0.35 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 12 109723126 109723126 C T FOXN4 Missense_Mutation p.R295Q 0.21 deleterious(0.01) probably_damaging(0.98) TCGA-XK-AAIW-01 12 109876340 109876340 G A MYO1H Splice_Site p.X721_splice 0.27 TCGA-XK-AAIW-01 12 110034289 110034289 C T MVK Silent p.D366D 0.18 TCGA-XK-AAIW-01 12 110429499 110429499 C T GIT2 Missense_Mutation p.S40N 0.37 tolerated(0.05) benign(0.43) TCGA-XK-AAIW-01 12 11061452 11061452 T C TAS2R13 Missense_Mutation p.N149S 0.35 tolerated(0.97) benign(0.07) TCGA-XK-AAIW-01 12 110815420 110815420 G A ANAPC7 Missense_Mutation p.L413F 0.47 deleterious(0.01) probably_damaging(0.995) TCGA-XK-AAIW-01 12 11083323 11083323 C T PRH2 Nonsense_Mutation p.Q55* 0.18 TCGA-XK-AAIW-01 12 110960163 110960163 G T RAD9B Nonsense_Mutation p.E358* 0.53 TCGA-XK-AAIW-01 12 111348851 111348851 C T MYL2 3'UTR 0.43 TCGA-XK-AAIW-01 12 11149790 11149790 G A TAS2R20 Nonsense_Mutation p.Q229* 0.38 TCGA-XK-AAIW-01 12 111786040 111786040 C T CUX2 Missense_Mutation p.R1458W 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 111801181 111801181 C T FAM109A Silent p.P30P 0.50 TCGA-XK-AAIW-01 12 111885287 111885287 G A SH2B3 Missense_Mutation p.R392Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 111923111 111923111 G A ATXN2 Missense_Mutation p.P988S 0.10 benign(0.23) TCGA-XK-AAIW-01 12 112182470 112182470 G A ACAD10 Missense_Mutation p.E611K 0.35 tolerated(0.45) benign(0.013) TCGA-XK-AAIW-01 12 112191640 112191640 C T ACAD10 Missense_Mutation p.A992V 0.39 deleterious(0) benign(0) TCGA-XK-AAIW-01 12 112616740 112616740 G A HECTD4 Silent p.S3640S 0.50 TCGA-XK-AAIW-01 12 112622030 112622030 G T HECTD4 Silent p.P3434P 0.11 TCGA-XK-AAIW-01 12 112622183 112622183 C T HECTD4 Silent p.A3383A 0.42 TCGA-XK-AAIW-01 12 112622525 112622525 G A HECTD4 Silent p.G3269G 0.48 TCGA-XK-AAIW-01 12 112666494 112666494 G A HECTD4 Missense_Mutation p.T2068I 0.18 benign(0.001) TCGA-XK-AAIW-01 12 112667566 112667566 G A HECTD4 Missense_Mutation p.A2006V 0.47 possibly_damaging(0.84) TCGA-XK-AAIW-01 12 112672997 112672997 G A HECTD4 Silent p.S1787S 0.31 TCGA-XK-AAIW-01 12 112711577 112711577 G A HECTD4 Silent p.N464N 0.43 TCGA-XK-AAIW-01 12 112844588 112844588 G T RPL6 Missense_Mutation p.T148N 0.45 deleterious(0.02) possibly_damaging(0.847) TCGA-XK-AAIW-01 12 112846078 112846078 T C RPL6 Missense_Mutation p.N101S 0.06 deleterious(0.02) possibly_damaging(0.885) TCGA-XK-AAIW-01 12 112924336 112924336 G A PTPN11 Missense_Mutation p.V428M 0.46 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 113379554 113379554 G A OAS3 Silent p.T119T 0.50 TCGA-XK-AAIW-01 12 113388746 113388746 G A OAS3 Silent p.T541T 0.37 TCGA-XK-AAIW-01 12 113407445 113407445 G A OAS3 Missense_Mutation p.G1046D 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 113496245 113496245 G A DTX1 Missense_Mutation p.R83H 0.35 deleterious(0) benign(0.049) TCGA-XK-AAIW-01 12 113496256 113496256 G T DTX1 Missense_Mutation p.G87C 0.29 deleterious(0) benign(0.284) TCGA-XK-AAIW-01 12 113565671 113565671 C T RASAL1 Missense_Mutation p.D82N 0.43 deleterious(0) possibly_damaging(0.891) TCGA-XK-AAIW-01 12 113629387 113629387 G A RITA1 Missense_Mutation p.R192H 0.52 tolerated(0.36) benign(0.001) TCGA-XK-AAIW-01 12 113664740 113664740 G A TPCN1 Missense_Mutation p.G100D 0.38 tolerated(0.15) benign(0.002) TCGA-XK-AAIW-01 12 113830893 113830893 G A SDS Silent p.H280H 0.44 TCGA-XK-AAIW-01 12 113836583 113836583 G A SDS Missense_Mutation p.P88S 0.54 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 113866982 113866982 G A SDSL Missense_Mutation p.A78T 0.11 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 12 114397934 114397934 C T RBM19 Missense_Mutation p.S90N 0.45 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 116404036 116404036 G A MED13L Missense_Mutation p.R2080C 0.41 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 12 116429262 116429262 G A MED13L Missense_Mutation p.A1166V 0.43 deleterious(0) unknown(0) TCGA-XK-AAIW-01 12 116446684 116446684 C A MED13L Missense_Mutation p.G512W 0.50 deleterious(0.01) unknown(0) TCGA-XK-AAIW-01 12 117465865 117465865 C T FBXW8 Missense_Mutation p.A562V 0.43 deleterious(0.02) benign(0.266) TCGA-XK-AAIW-01 12 118454653 118454653 G A RFC5 Silent p.K7K 0.43 TCGA-XK-AAIW-01 12 118639201 118639201 G T TAOK3 Missense_Mutation p.A296E 0.54 deleterious(0) possibly_damaging(0.819) TCGA-XK-AAIW-01 12 119617249 119617249 G A HSPB8 Silent p.L44L 0.35 TCGA-XK-AAIW-01 12 119942901 119942901 C T CCDC60 Nonsense_Mutation p.R226* 0.32 TCGA-XK-AAIW-01 12 120189920 120189920 G A CIT Missense_Mutation p.R947C 0.31 deleterious(0.02) possibly_damaging(0.517) TCGA-XK-AAIW-01 12 120534940 120534940 G A RAB35 3'UTR 0.36 TCGA-XK-AAIW-01 12 120569761 120569761 C T GCN1L1 Silent p.E2461E 0.27 TCGA-XK-AAIW-01 12 120574343 120574343 G A GCN1L1 Missense_Mutation p.A2324V 0.19 benign(0.001) TCGA-XK-AAIW-01 12 120575043 120575043 G A GCN1L1 Silent p.G2248G 0.45 TCGA-XK-AAIW-01 12 120594309 120594309 C T GCN1L1 Missense_Mutation p.A1090T 0.42 possibly_damaging(0.798) TCGA-XK-AAIW-01 12 120613962 120613962 G A GCN1L1 Silent p.I299I 0.37 TCGA-XK-AAIW-01 12 120637005 120637005 C T RPLP0 Silent p.L78L 0.38 TCGA-XK-AAIW-01 12 120960094 120960094 C T COQ5 Missense_Mutation p.R92H 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 121098077 121098077 G A CABP1 Missense_Mutation p.R255H 0.13 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 121151157 121151157 G A UNC119B Missense_Mutation p.V109I 0.28 tolerated(0.06) benign(0.021) TCGA-XK-AAIW-01 12 121157888 121157888 C G UNC119B 3'UTR 0.33 TCGA-XK-AAIW-01 12 121712246 121712246 G A CAMKK2 Silent p.S28S 0.56 TCGA-XK-AAIW-01 12 121947469 121947469 G A KDM2B Silent p.G516G 0.41 TCGA-XK-AAIW-01 12 122394993 122394993 G T WDR66 Missense_Mutation p.G517C 0.32 tolerated(0.11) possibly_damaging(0.85) TCGA-XK-AAIW-01 12 12274268 12274268 C T LRP6 Missense_Mutation p.R1545Q 0.31 deleterious(0.01) possibly_damaging(0.854) TCGA-XK-AAIW-01 12 122803805 122803805 G A CLIP1 Nonsense_Mutation p.Q1114* 0.36 TCGA-XK-AAIW-01 12 12303922 12303922 C T LRP6 Missense_Mutation p.V948M 0.34 tolerated(0.06) possibly_damaging(0.798) TCGA-XK-AAIW-01 12 123058925 123058925 G A KNTC1 Missense_Mutation p.D794N 0.26 tolerated(0.07) probably_damaging(0.984) TCGA-XK-AAIW-01 12 123060443 123060443 A G KNTC1 Missense_Mutation p.I861M 0.40 tolerated(0.06) benign(0.311) TCGA-XK-AAIW-01 12 123200021 123200021 A G HCAR3 3'UTR 0.28 TCGA-XK-AAIW-01 12 123214176 123214176 C T HCAR1 Silent p.V237V 0.15 TCGA-XK-AAIW-01 12 123472782 123472782 C T PITPNM2 Missense_Mutation p.R999Q 0.36 deleterious(0.04) probably_damaging(0.99) TCGA-XK-AAIW-01 12 123481945 123481945 C T PITPNM2 Missense_Mutation p.A467T 0.39 deleterious(0.03) benign(0.01) TCGA-XK-AAIW-01 12 123706393 123706393 G A MPHOSPH9 5'UTR 0.39 TCGA-XK-AAIW-01 12 123782717 123782717 G A SBNO1 Missense_Mutation p.R1283C 0.21 deleterious(0) benign(0.017) TCGA-XK-AAIW-01 12 123830009 123830009 G A SBNO1 Nonsense_Mutation p.Q116* 0.33 TCGA-XK-AAIW-01 12 12397436 12397436 A G LRP6 Missense_Mutation p.V70A 0.47 tolerated(0.2) probably_damaging(0.985) TCGA-XK-AAIW-01 12 124106308 124106308 G T EIF2B1 Missense_Mutation p.L305M 0.45 tolerated(0.18) benign(0.395) TCGA-XK-AAIW-01 12 124191586 124191586 G A TCTN2 Silent p.P650P 0.43 TCGA-XK-AAIW-01 12 124241427 124241427 G A ATP6V0A2 Missense_Mutation p.V787I 0.46 tolerated(0.5) benign(0.088) TCGA-XK-AAIW-01 12 124268552 124268552 C T DNAH10 Missense_Mutation p.A292V 0.40 possibly_damaging(0.523) TCGA-XK-AAIW-01 12 124827614 124827614 G A NCOR2 Missense_Mutation p.R1625C 0.33 probably_damaging(0.999) TCGA-XK-AAIW-01 12 124831384 124831384 G A NCOR2 Missense_Mutation p.S1362F 0.67 probably_damaging(0.999) TCGA-XK-AAIW-01 12 12483540 12483540 C T MANSC1 Silent p.S239S 0.22 TCGA-XK-AAIW-01 12 124857101 124857101 G A NCOR2 Silent p.A758A 0.42 TCGA-XK-AAIW-01 12 125267257 125267257 C T SCARB1 Missense_Mutation p.G501D 0.38 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-XK-AAIW-01 12 125396977 125396977 C T UBC Silent p.L447L 0.27 TCGA-XK-AAIW-01 12 125449032 125449032 G A DHX37 Silent p.G651G 0.12 TCGA-XK-AAIW-01 12 125449047 125449047 G A DHX37 Silent p.Y646Y 0.40 TCGA-XK-AAIW-01 12 125465071 125465071 C T DHX37 Missense_Mutation p.V235I 0.32 tolerated(0.22) benign(0) TCGA-XK-AAIW-01 12 126138923 126138923 C T TMEM132B Silent p.C968C 0.37 TCGA-XK-AAIW-01 12 12630760 12630760 C T DUSP16 Silent p.T335T 0.42 TCGA-XK-AAIW-01 12 129293375 129293375 C T SLC15A4 Missense_Mutation p.A406T 0.44 tolerated(0.06) benign(0.235) TCGA-XK-AAIW-01 12 130647904 130647904 C T FZD10 Silent p.N139N 0.35 TCGA-XK-AAIW-01 12 13065542 13065542 C T GPRC5A 3'UTR 0.46 TCGA-XK-AAIW-01 12 130827193 130827193 G A PIWIL1 Silent p.A19A 0.45 TCGA-XK-AAIW-01 12 13240093 13240093 C T GSG1 Missense_Mutation p.A224T 0.40 tolerated(0.12) benign(0.251) TCGA-XK-AAIW-01 12 132403156 132403156 C T ULK1 Missense_Mutation p.P814L 0.40 deleterious(0.01) benign(0.146) TCGA-XK-AAIW-01 12 132446496 132446496 C T EP400 Silent p.D444D 0.33 TCGA-XK-AAIW-01 12 132474615 132474615 G A EP400 Missense_Mutation p.R839Q 0.10 unknown(0) TCGA-XK-AAIW-01 12 132502188 132502188 C T EP400 Silent p.G1344G 0.44 TCGA-XK-AAIW-01 12 132611078 132611078 G A RP13-977J11.5 RNA 0.33 TCGA-XK-AAIW-01 12 133209374 133209374 G A POLE Silent p.I2004I 0.44 TCGA-XK-AAIW-01 12 133219878 133219878 C T POLE Missense_Mutation p.A1495T 0.31 tolerated(0.05) benign(0.017) TCGA-XK-AAIW-01 12 133244173 133244173 G T POLE Silent p.T745T 0.35 TCGA-XK-AAIW-01 12 133249829 133249829 G A POLE Missense_Mutation p.A465V 0.40 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 12 133306443 133306443 C T ANKLE2 Missense_Mutation p.A769T 0.14 tolerated(0.46) benign(0.01) TCGA-XK-AAIW-01 12 133319805 133319805 C T ANKLE2 Missense_Mutation p.V430M 0.39 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 12 133324465 133324465 G A ANKLE2 Missense_Mutation p.R395C 0.23 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 133331649 133331649 G A ANKLE2 Silent p.I84I 0.37 TCGA-XK-AAIW-01 12 133384773 133384773 G A GOLGA3 Silent p.D294D 0.43 TCGA-XK-AAIW-01 12 13768515 13768515 G T GRIN2B Missense_Mutation p.S471Y 0.20 tolerated(0.15) benign(0.221) TCGA-XK-AAIW-01 12 14578311 14578311 C T ATF7IP Missense_Mutation p.P488S 0.33 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-XK-AAIW-01 12 14619487 14619487 C A ATF7IP Missense_Mutation p.A942D 0.33 tolerated_low_confidence(0.05) unknown(0) TCGA-XK-AAIW-01 12 14778724 14778724 C A GUCY2C Missense_Mutation p.R792M 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 14804929 14804929 A G GUCY2C Silent p.G523G 0.34 TCGA-XK-AAIW-01 12 15067602 15067602 G A ERP27 3'UTR 0.37 TCGA-XK-AAIW-01 12 15669723 15669723 C A PTPRO Missense_Mutation p.L538I 0.43 tolerated(0.14) benign(0.346) TCGA-XK-AAIW-01 12 15733025 15733025 C A PTPRO Missense_Mutation p.D991E 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 12 15748007 15748007 C T PTPRO Intron 0.30 TCGA-XK-AAIW-01 12 16053889 16053889 A G STRAP Missense_Mutation p.S312G 0.40 tolerated(0.19) benign(0) TCGA-XK-AAIW-01 12 16055902 16055902 T C STRAP Missense_Mutation p.V348A 0.36 tolerated_low_confidence(0.1) benign(0.004) TCGA-XK-AAIW-01 12 16109906 16109906 C T DERA Missense_Mutation p.P23L 0.19 tolerated(0.12) benign(0.2) TCGA-XK-AAIW-01 12 1755276 1755276 G A WNT5B Missense_Mutation p.G313D 0.46 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 18552761 18552761 T C PIK3C2G Silent p.A724A 0.48 TCGA-XK-AAIW-01 12 18858171 18858171 G A PLCZ1 Nonsense_Mutation p.Q265* 0.09 TCGA-XK-AAIW-01 12 18891971 18891971 C T CAPZA3 Nonsense_Mutation p.R257* 0.33 TCGA-XK-AAIW-01 12 19653146 19653146 T C AEBP2 Silent p.F430F 0.33 TCGA-XK-AAIW-01 12 1993988 1993988 G A CACNA2D4 Silent p.G406G 0.41 TCGA-XK-AAIW-01 12 1995182 1995182 G A CACNA2D4 Silent p.I339I 0.28 TCGA-XK-AAIW-01 12 20799802 20799802 C T PDE3A Missense_Mutation p.A828V 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 12 20807127 20807127 A G PDE3A Missense_Mutation p.N1058D 0.12 tolerated(0.73) benign(0.002) TCGA-XK-AAIW-01 12 21030809 21030809 C T SLCO1B3 Silent p.Y358Y 0.40 TCGA-XK-AAIW-01 12 21445155 21445155 G A SLCO1A2 Missense_Mutation p.A518V 0.47 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 12 21790097 21790097 T C LDHB Missense_Mutation p.T249A 0.31 deleterious(0.02) possibly_damaging(0.741) TCGA-XK-AAIW-01 12 21953942 21953942 T C ABCC9 3'UTR 0.37 TCGA-XK-AAIW-01 12 22208195 22208195 G A CMAS Missense_Mutation p.A125T 0.41 tolerated(1) benign(0.051) TCGA-XK-AAIW-01 12 23687439 23687439 G A SOX5 Missense_Mutation p.P669L 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 24048792 24048792 G A SOX5 Missense_Mutation p.P69S 0.44 tolerated_low_confidence(0.27) benign(0.001) TCGA-XK-AAIW-01 12 24737079 24737079 C T LINC00477 RNA 0.42 TCGA-XK-AAIW-01 12 24989498 24989498 T C BCAT1 Missense_Mutation p.I296V 0.14 tolerated(0.31) benign(0.044) TCGA-XK-AAIW-01 12 25357256 25357256 C T LYRM5 3'UTR 0.14 TCGA-XK-AAIW-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.32 deleterious(0.03) benign(0.376) TCGA-XK-AAIW-01 12 26217739 26217739 G T RASSF8 Nonsense_Mutation p.G138* 0.35 TCGA-XK-AAIW-01 12 26551961 26551961 G T ITPR2 Missense_Mutation p.A2515D 0.45 tolerated(0.15) possibly_damaging(0.797) TCGA-XK-AAIW-01 12 26572045 26572045 G A ITPR2 Silent p.H2349H 0.23 TCGA-XK-AAIW-01 12 2659184 2659184 G A CACNA1C Missense_Mutation p.C489Y 0.50 deleterious(0.03) benign(0.273) TCGA-XK-AAIW-01 12 27081709 27081709 G A ASUN Missense_Mutation p.R144C 0.36 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 12 27109595 27109595 T C FGFR1OP2 Splice_Site p.X85_splice 0.31 TCGA-XK-AAIW-01 12 27127112 27127112 G A TM7SF3 Missense_Mutation p.T500M 0.25 deleterious(0.03) probably_damaging(0.986) TCGA-XK-AAIW-01 12 27450705 27450705 C T STK38L Missense_Mutation p.R18W 0.43 deleterious(0.03) possibly_damaging(0.462) TCGA-XK-AAIW-01 12 27533279 27533279 T C ARNTL2 Silent p.R142R 0.47 TCGA-XK-AAIW-01 12 27835613 27835613 C T PPFIBP1 Nonsense_Mutation p.R748* 0.46 TCGA-XK-AAIW-01 12 27867739 27867739 C T MRPS35 Missense_Mutation p.P47S 0.19 tolerated(0.74) benign(0.002) TCGA-XK-AAIW-01 12 28116656 28116656 G A PTHLH Missense_Mutation p.S50F 0.41 deleterious(0.01) probably_damaging(0.954) TCGA-XK-AAIW-01 12 28458701 28458701 G T CCDC91 Missense_Mutation p.A77S 0.40 tolerated(0.71) benign(0.001) TCGA-XK-AAIW-01 12 2936421 2936421 C T NRIP2 Silent p.P266P 0.37 TCGA-XK-AAIW-01 12 2936801 2936801 A T NRIP2 Missense_Mutation p.L248H 0.09 tolerated(0.1) probably_damaging(0.99) TCGA-XK-AAIW-01 12 29494701 29494701 C T ERGIC2 Missense_Mutation p.R346H 0.37 deleterious(0) probably_damaging(0.915) TCGA-XK-AAIW-01 12 29630489 29630489 G A OVCH1 Silent p.D364D 0.28 TCGA-XK-AAIW-01 12 29659748 29659748 T A TMTC1 3'UTR 0.48 TCGA-XK-AAIW-01 12 2983405 2983405 G A FOXM1 Silent p.N80N 0.38 TCGA-XK-AAIW-01 12 304491 304491 G A SLC6A12 Silent p.G443G 0.46 TCGA-XK-AAIW-01 12 30887978 30887978 A G CAPRIN2 Missense_Mutation p.Y245H 0.07 tolerated(0.18) benign(0.029) TCGA-XK-AAIW-01 12 31236825 31236825 C T DDX11 Nonsense_Mutation p.R75* 0.34 TCGA-XK-AAIW-01 12 31545313 31545313 G A DENND5B Silent p.T1118T 0.39 TCGA-XK-AAIW-01 12 31600654 31600654 C T DENND5B Missense_Mutation p.R560H 0.33 tolerated(0.14) benign(0.022) TCGA-XK-AAIW-01 12 31944876 31944876 C T H3F3C Silent p.A75A 0.33 TCGA-XK-AAIW-01 12 32136765 32136765 C A KIAA1551 Missense_Mutation p.P959H 0.52 tolerated(0.52) benign(0.276) TCGA-XK-AAIW-01 12 32138032 32138032 C T KIAA1551 Silent p.N1381N 0.10 TCGA-XK-AAIW-01 12 32138302 32138302 C T KIAA1551 Silent p.N1471N 0.38 TCGA-XK-AAIW-01 12 32886741 32886741 G A DNM1L Silent p.E513E 0.45 TCGA-XK-AAIW-01 12 32903660 32903660 C T YARS2 Missense_Mutation p.A366T 0.25 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 12 333659 333659 C T SLC6A13 Missense_Mutation p.A361T 0.13 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 12 33529798 33529798 G A SYT10 Silent p.S513S 0.18 TCGA-XK-AAIW-01 12 33592426 33592426 C T SYT10 Missense_Mutation p.S11N 0.32 tolerated(0.25) benign(0.165) TCGA-XK-AAIW-01 12 3387724 3387724 G A TSPAN9 Silent p.T67T 0.35 TCGA-XK-AAIW-01 12 3763443 3763443 C A EFCAB4B Missense_Mutation p.Q327H 0.13 tolerated(0.11) benign(0.024) TCGA-XK-AAIW-01 12 38710823 38710823 C A ALG10B Missense_Mutation p.P43H 0.45 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 12 38714692 38714692 G A ALG10B Missense_Mutation p.A367T 0.37 tolerated(0.16) benign(0.01) TCGA-XK-AAIW-01 12 38714770 38714771 - T ALG10B Frame_Shift_Ins p.W395Lfs*32 0.34 TCGA-XK-AAIW-01 12 39047823 39047823 C T CPNE8 Missense_Mutation p.S519N 0.32 deleterious(0.03) probably_damaging(0.993) TCGA-XK-AAIW-01 12 39155959 39155959 G A CPNE8 Missense_Mutation p.A212V 0.46 deleterious(0.01) possibly_damaging(0.527) TCGA-XK-AAIW-01 12 39711940 39711940 A G KIF21A Silent p.R1281R 0.41 TCGA-XK-AAIW-01 12 39760173 39760173 G A KIF21A Silent p.G294G 0.28 TCGA-XK-AAIW-01 12 40085893 40085893 C T C12orf40 Nonsense_Mutation p.R464* 0.20 TCGA-XK-AAIW-01 12 404916 404916 C T KDM5A Silent p.V1426V 0.43 TCGA-XK-AAIW-01 12 41410696 41410696 A G CNTN1 Silent p.A799A 0.23 TCGA-XK-AAIW-01 12 41585332 41585332 G T PDZRN4 Missense_Mutation p.G241C 0.34 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-XK-AAIW-01 12 42854165 42854165 G A PRICKLE1 Missense_Mutation p.R648W 0.32 deleterious(0.01) probably_damaging(0.924) TCGA-XK-AAIW-01 12 43822102 43822102 T A ADAMTS20 Missense_Mutation p.N1296I 0.36 tolerated(0.1) possibly_damaging(0.847) TCGA-XK-AAIW-01 12 43826457 43826457 G A ADAMTS20 Silent p.L960L 0.39 TCGA-XK-AAIW-01 12 43944804 43944804 C T ADAMTS20 Missense_Mutation p.A121T 0.44 tolerated(0.51) benign(0.021) TCGA-XK-AAIW-01 12 44124291 44124291 G A PUS7L Missense_Mutation p.T665M 0.38 tolerated(0.3) benign(0.009) TCGA-XK-AAIW-01 12 44148474 44148474 T - PUS7L Frame_Shift_Del p.N192Tfs*6 0.27 TCGA-XK-AAIW-01 12 44338119 44338119 G A TMEM117 Silent p.T128T 0.29 TCGA-XK-AAIW-01 12 443455 443456 - A KDM5A Frame_Shift_Ins p.C481Lfs*5 0.31 TCGA-XK-AAIW-01 12 4459010 4459010 G T C12orf5 Missense_Mutation p.S73I 0.18 deleterious(0.03) benign(0.152) TCGA-XK-AAIW-01 12 4479656 4479656 C T FGF23 Silent p.P203P 0.38 TCGA-XK-AAIW-01 12 4479680 4479680 G A FGF23 Silent p.P195P 0.31 TCGA-XK-AAIW-01 12 45000983 45000983 T C NELL2 Silent p.P594P 0.40 TCGA-XK-AAIW-01 12 45169828 45169828 C T NELL2 Missense_Mutation p.G340S 0.29 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 12 45751119 45751119 T C ANO6 Missense_Mutation p.Y325H 0.34 deleterious(0) possibly_damaging(0.905) TCGA-XK-AAIW-01 12 46245688 46245688 G A ARID2 Missense_Mutation p.R1261H 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XK-AAIW-01 12 46320481 46320482 - T SCAF11 Frame_Shift_Ins p.N1001Kfs*2 0.34 TCGA-XK-AAIW-01 12 464374 464374 C T KDM5A Missense_Mutation p.A274T 0.36 tolerated(0.36) benign(0.018) TCGA-XK-AAIW-01 12 4668203 4668203 A G RAD51AP1 3'UTR 0.49 TCGA-XK-AAIW-01 12 46756336 46756336 G A SLC38A2 Missense_Mutation p.A422V 0.35 tolerated(1) benign(0.008) TCGA-XK-AAIW-01 12 46757607 46757607 C T SLC38A2 Missense_Mutation p.R319H 0.34 deleterious(0.03) probably_damaging(0.978) TCGA-XK-AAIW-01 12 4700381 4700381 C A DYRK4 Missense_Mutation p.P12H 0.33 deleterious(0.01) possibly_damaging(0.625) TCGA-XK-AAIW-01 12 47472244 47472244 G A AMIGO2 Missense_Mutation p.P181L 0.08 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 47629002 47629002 G A PCED1B Silent p.G52G 0.40 TCGA-XK-AAIW-01 12 47629421 47629421 A G PCED1B Missense_Mutation p.E192G 0.43 deleterious(0.04) benign(0) TCGA-XK-AAIW-01 12 48185677 48185677 G A HDAC7 Missense_Mutation p.R597W 0.38 deleterious(0) possibly_damaging(0.686) TCGA-XK-AAIW-01 12 48190906 48190906 C T HDAC7 Silent p.K199K 0.43 TCGA-XK-AAIW-01 12 48251320 48251320 G A VDR Silent p.Y193Y 0.47 TCGA-XK-AAIW-01 12 48251385 48251385 G A VDR Missense_Mutation p.P172S 0.38 deleterious(0.02) possibly_damaging(0.639) TCGA-XK-AAIW-01 12 48258928 48258928 C T VDR Missense_Mutation p.C110Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 12 48389522 48389522 G A COL2A1 Missense_Mutation p.P227S 0.48 unknown(0) TCGA-XK-AAIW-01 12 48477397 48477397 G A SENP1 Nonsense_Mutation p.R177* 0.38 TCGA-XK-AAIW-01 12 48482988 48482988 C T SENP1 Intron 0.29 TCGA-XK-AAIW-01 12 48536609 48536609 G A PFKM Silent p.R637R 0.10 TCGA-XK-AAIW-01 12 48537872 48537872 A G PFKM Missense_Mutation p.N713D 0.38 tolerated(0.37) possibly_damaging(0.597) TCGA-XK-AAIW-01 12 48543494 48543494 G A ASB8 Silent p.G174G 0.33 TCGA-XK-AAIW-01 12 48866542 48866542 G A ANP32D Missense_Mutation p.G32D 0.36 deleterious(0) possibly_damaging(0.8) TCGA-XK-AAIW-01 12 49165679 49165679 G A ADCY6 Silent p.D955D 0.36 TCGA-XK-AAIW-01 12 49172005 49172005 G A ADCY6 Silent p.N300N 0.34 TCGA-XK-AAIW-01 12 49226221 49226221 A G DDX23 Missense_Mutation p.S647P 0.35 deleterious(0.04) benign(0.022) TCGA-XK-AAIW-01 12 49237828 49237828 C T DDX23 Missense_Mutation p.R72Q 0.41 deleterious_low_confidence(0.05) unknown(0) TCGA-XK-AAIW-01 12 49314997 49314997 A G CCDC65 Missense_Mutation p.N409S 0.13 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 12 49375049 49375049 C T WNT1 Missense_Mutation p.R247C 0.50 deleterious(0) possibly_damaging(0.733) TCGA-XK-AAIW-01 12 49391285 49391285 C T DDN Silent p.T458T 0.45 TCGA-XK-AAIW-01 12 49397614 49397614 G A PRKAG1 Missense_Mutation p.T219I 0.37 deleterious(0.01) benign(0.239) TCGA-XK-AAIW-01 12 49420343 49420343 G A KMT2D Missense_Mutation p.H5136Y 0.41 unknown(0) TCGA-XK-AAIW-01 12 49420496 49420496 G A KMT2D Missense_Mutation p.H5085Y 0.57 unknown(0) TCGA-XK-AAIW-01 12 49435269 49435269 C T KMT2D Missense_Mutation p.R2095H 0.36 probably_damaging(0.996) TCGA-XK-AAIW-01 12 49445673 49445673 C T KMT2D Missense_Mutation p.R598H 0.44 unknown(0) TCGA-XK-AAIW-01 12 49658916 49658916 G A TUBA1C 5'UTR 0.38 TCGA-XK-AAIW-01 12 49721017 49721017 C T TROAP Silent p.R265R 0.39 TCGA-XK-AAIW-01 12 49724806 49724806 C T TROAP Intron 0.45 TCGA-XK-AAIW-01 12 49993361 49993361 G T FAM186B Missense_Mutation p.L688M 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-XK-AAIW-01 12 50037897 50037897 G A PRPF40B Silent p.T867T 0.32 TCGA-XK-AAIW-01 12 50045745 50045745 G A FMNL3 Missense_Mutation p.P525L 0.21 tolerated(0.1) probably_damaging(0.996) TCGA-XK-AAIW-01 12 50190190 50190190 G A NCKAP5L Nonsense_Mutation p.R485* 0.42 TCGA-XK-AAIW-01 12 50190921 50190921 G A NCKAP5L Missense_Mutation p.A241V 0.29 tolerated_low_confidence(0.1) benign(0.231) TCGA-XK-AAIW-01 12 50196894 50196894 G A NCKAP5L Missense_Mutation p.R60C 0.13 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 5021063 5021063 C T KCNA1 Silent p.S173S 0.08 TCGA-XK-AAIW-01 12 50483696 50483696 C T SMARCD1 Silent p.T267T 0.30 TCGA-XK-AAIW-01 12 50824352 50824352 C T LARP4 Nonsense_Mutation p.R133* 0.41 TCGA-XK-AAIW-01 12 51138419 51138419 G A DIP2B Missense_Mutation p.G1510S 0.12 deleterious(0.04) probably_damaging(0.959) TCGA-XK-AAIW-01 12 51495718 51495718 C T TFCP2 Missense_Mutation p.R384Q 0.40 deleterious(0.01) possibly_damaging(0.859) TCGA-XK-AAIW-01 12 51512418 51512418 G A TFCP2 Missense_Mutation p.T87M 0.39 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 12 51584091 51584091 A T POU6F1 Missense_Mutation p.F282Y 0.36 deleterious(0) possibly_damaging(0.656) TCGA-XK-AAIW-01 12 51735033 51735033 G A CELA1 Missense_Mutation p.T153I 0.50 tolerated(0.08) benign(0.406) TCGA-XK-AAIW-01 12 52056609 52056609 C T SCN8A Missense_Mutation p.A3V 0.19 deleterious_low_confidence(0.03) benign(0.217) TCGA-XK-AAIW-01 12 52385742 52385742 C T ACVR1B Missense_Mutation p.R494C 0.45 deleterious(0) probably_damaging(0.924) TCGA-XK-AAIW-01 12 52567466 52567466 C T KRT80 Missense_Mutation p.G250D 0.32 tolerated(0.29) benign(0.167) TCGA-XK-AAIW-01 12 52629021 52629021 G A KRT7 Missense_Mutation p.R136H 0.30 tolerated(0.2) benign(0.011) TCGA-XK-AAIW-01 12 52699573 52699573 G A KRT86 Splice_Site p.X342_splice 0.34 TCGA-XK-AAIW-01 12 52844401 52844401 G A KRT6B Missense_Mutation p.R182W 0.13 deleterious(0.01) benign(0.381) TCGA-XK-AAIW-01 12 52912786 52912786 G A KRT5 Silent p.G238G 0.16 TCGA-XK-AAIW-01 12 53012272 53012272 C T KRT73 Missense_Mutation p.A13T 0.40 tolerated(0.89) benign(0.002) TCGA-XK-AAIW-01 12 53042001 53042001 C T KRT2 Missense_Mutation p.A360T 0.33 tolerated(0.05) possibly_damaging(0.733) TCGA-XK-AAIW-01 12 53165939 53165939 G A KRT76 Missense_Mutation p.A359V 0.48 deleterious(0.03) possibly_damaging(0.759) TCGA-XK-AAIW-01 12 53170909 53170909 C T KRT76 Missense_Mutation p.R56H 0.38 tolerated(0.05) unknown(0) TCGA-XK-AAIW-01 12 53185103 53185103 C T KRT3 Silent p.A474A 0.34 TCGA-XK-AAIW-01 12 53187986 53187986 G A KRT3 Missense_Mutation p.R259W 0.21 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 12 53346422 53346422 C T KRT18 Intron 0.42 TCGA-XK-AAIW-01 12 53421650 53421650 G A EIF4B Missense_Mutation p.R251Q 0.43 deleterious(0.04) benign(0.238) TCGA-XK-AAIW-01 12 53445691 53445691 C A TENC1 Missense_Mutation p.P53H 0.44 tolerated(0.07) possibly_damaging(0.671) TCGA-XK-AAIW-01 12 53445735 53445735 G A TENC1 Missense_Mutation p.V68I 0.32 tolerated(0.31) benign(0.012) TCGA-XK-AAIW-01 12 53452870 53452870 C A TENC1 Missense_Mutation p.P492H 0.53 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 12 53514641 53514641 C T SOAT2 Nonsense_Mutation p.R371* 0.42 TCGA-XK-AAIW-01 12 53553931 53553931 C T CSAD Missense_Mutation p.R407H 0.43 tolerated(0.95) probably_damaging(0.999) TCGA-XK-AAIW-01 12 53586194 53586194 G A ITGB7 Missense_Mutation p.T692I 0.33 deleterious(0.01) possibly_damaging(0.794) TCGA-XK-AAIW-01 12 53680240 53680240 C T ESPL1 Silent p.N1240N 0.38 TCGA-XK-AAIW-01 12 53683373 53683373 C T ESPL1 Missense_Mutation p.P1703L 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 53700495 53700495 C T C12orf10 Missense_Mutation p.A266V 0.36 tolerated(0.27) benign(0.009) TCGA-XK-AAIW-01 12 53818596 53818596 C T AMHR2 Silent p.G112G 0.19 TCGA-XK-AAIW-01 12 53861054 53861054 C T PCBP2 Missense_Mutation p.T259M 0.32 tolerated(0.44) benign(0.011) TCGA-XK-AAIW-01 12 53865443 53865443 C T PCBP2 Missense_Mutation p.R306C 0.46 tolerated(0.08) benign(0.02) TCGA-XK-AAIW-01 12 53876414 53876414 G A MAP3K12 Missense_Mutation p.R725W 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.582) TCGA-XK-AAIW-01 12 53880325 53880325 C T MAP3K12 Missense_Mutation p.R176H 0.33 deleterious(0.02) benign(0.154) TCGA-XK-AAIW-01 12 53900561 53900561 C T NPFF Silent p.%3D 0.18 TCGA-XK-AAIW-01 12 539871 539871 T C CCDC77 Silent p.C184C 0.16 TCGA-XK-AAIW-01 12 54350229 54350229 G A HOXC12 Missense_Mutation p.R243H 0.46 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 12 54448817 54448817 G A HOXC4 Missense_Mutation p.R208H 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 54756323 54756323 G A GPR84 3'UTR 0.57 TCGA-XK-AAIW-01 12 54764451 54764451 G A ZNF385A Silent p.L297L 0.56 TCGA-XK-AAIW-01 12 54803281 54803281 G T ITGA5 Silent p.G150G 0.31 TCGA-XK-AAIW-01 12 55038967 55038967 G A DCD Silent p.S93S 0.40 TCGA-XK-AAIW-01 12 55248906 55248906 C T MUCL1 Missense_Mutation p.P22L 0.29 deleterious_low_confidence(0.01) unknown(0) TCGA-XK-AAIW-01 12 55726304 55726304 C T OR6C3 Missense_Mutation p.L274F 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-XK-AAIW-01 12 55795143 55795143 C A OR6C65 Silent p.T277T 0.28 TCGA-XK-AAIW-01 12 56031342 56031342 C A OR10P1 Missense_Mutation p.L223M 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 12 56088268 56088268 G A ITGA7 Silent p.S776S 0.46 TCGA-XK-AAIW-01 12 56092305 56092305 C A ITGA7 Missense_Mutation p.G356W 0.10 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 12 56143335 56143335 G A GDF11 Missense_Mutation p.R298Q 0.52 deleterious(0) probably_damaging(0.969) TCGA-XK-AAIW-01 12 56143436 56143436 G A GDF11 Missense_Mutation p.A332T 0.40 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 12 56349134 56349134 C A PMEL Missense_Mutation p.G599C 0.20 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 12 56420735 56420735 C T IKZF4 Missense_Mutation p.R153W 0.37 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 56493687 56493687 G T ERBB3 Missense_Mutation p.E1001D 0.22 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 12 56514903 56514903 G A ZC3H10 Missense_Mutation p.R186H 0.33 tolerated(0.19) possibly_damaging(0.764) TCGA-XK-AAIW-01 12 56619180 56619180 G A NABP2 Missense_Mutation p.G35R 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 56630996 56630996 G A SLC39A5 Missense_Mutation p.V451M 0.41 tolerated(0.13) possibly_damaging(0.601) TCGA-XK-AAIW-01 12 56641862 56641862 G A ANKRD52 Silent p.G641G 0.38 TCGA-XK-AAIW-01 12 56641924 56641924 C T ANKRD52 Missense_Mutation p.A621T 0.36 tolerated(0.07) possibly_damaging(0.753) TCGA-XK-AAIW-01 12 56648679 56648679 G A ANKRD52 Missense_Mutation p.R174W 0.45 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 56667535 56667535 G A CS Nonsense_Mutation p.R356* 0.23 TCGA-XK-AAIW-01 12 56716848 56716848 G A PAN2 Nonsense_Mutation p.Q835* 0.25 TCGA-XK-AAIW-01 12 56745142 56745142 G A STAT2 Missense_Mutation p.P292L 0.41 tolerated(0.07) benign(0.068) TCGA-XK-AAIW-01 12 57003985 57003985 G A BAZ2A Silent p.N600N 0.40 TCGA-XK-AAIW-01 12 57110170 57110170 G T NACA Intron 0.36 TCGA-XK-AAIW-01 12 57113481 57113481 A G NACA Intron 0.44 TCGA-XK-AAIW-01 12 57324035 57324035 C T SDR9C7 Missense_Mutation p.V179I 0.40 tolerated(0.06) benign(0.151) TCGA-XK-AAIW-01 12 57430850 57430850 C T MYO1A Missense_Mutation p.R694H 0.34 deleterious(0.03) benign(0.377) TCGA-XK-AAIW-01 12 57454725 57454725 C A TMEM194A Missense_Mutation p.K328N 0.43 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 12 57485260 57485260 G T NAB2 Missense_Mutation p.G146C 0.42 deleterious(0.01) probably_damaging(0.912) TCGA-XK-AAIW-01 12 57496631 57496631 T C STAT6 Missense_Mutation p.D429G 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 57539195 57539195 C T LRP1 Nonsense_Mutation p.Q255* 0.43 TCGA-XK-AAIW-01 12 57559687 57559687 A G LRP1 Missense_Mutation p.N877S 0.49 possibly_damaging(0.45) TCGA-XK-AAIW-01 12 57579327 57579327 C T LRP1 Silent p.C2159C 0.29 TCGA-XK-AAIW-01 12 57588291 57588291 G A LRP1 Intron 0.39 TCGA-XK-AAIW-01 12 57588293 57588293 G A LRP1 Intron 0.36 TCGA-XK-AAIW-01 12 57596234 57596234 G A LRP1 Missense_Mutation p.R3542H 0.24 probably_damaging(0.997) TCGA-XK-AAIW-01 12 57598454 57598454 G A LRP1 Missense_Mutation p.D3706N 0.50 benign(0.036) TCGA-XK-AAIW-01 12 57599196 57599196 C T LRP1 Missense_Mutation p.R3800C 0.27 benign(0.326) TCGA-XK-AAIW-01 12 57601916 57601916 G A LRP1 Silent p.A3985A 0.08 TCGA-XK-AAIW-01 12 57603498 57603498 G A LRP1 Missense_Mutation p.D4096N 0.45 probably_damaging(0.959) TCGA-XK-AAIW-01 12 57604585 57604585 G A LRP1 Missense_Mutation p.S4280N 0.49 benign(0.047) TCGA-XK-AAIW-01 12 57630932 57630932 G A NDUFA4L2 5'UTR 0.39 TCGA-XK-AAIW-01 12 57850689 57850689 G A INHBE 3'UTR 0.48 TCGA-XK-AAIW-01 12 57863392 57863392 G A GLI1 Missense_Mutation p.R496H 0.53 tolerated(0.66) benign(0.012) TCGA-XK-AAIW-01 12 58009785 58009785 C T ARHGEF25 Missense_Mutation p.R508W 0.48 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 12 58121147 58121147 A T AGAP2 Missense_Mutation p.S1026T 0.33 tolerated(0.49) probably_damaging(0.979) TCGA-XK-AAIW-01 12 58123441 58123441 G A AGAP2 Silent p.G846G 0.33 TCGA-XK-AAIW-01 12 58158892 58158892 G A CYP27B1 Missense_Mutation p.S231F 0.44 tolerated(0.7) possibly_damaging(0.903) TCGA-XK-AAIW-01 12 58190056 58190056 G A TSFM Missense_Mutation p.S244N 0.27 tolerated(0.26) benign(0.03) TCGA-XK-AAIW-01 12 59282165 59282165 G A LRIG3 Missense_Mutation p.A298V 0.44 deleterious(0.03) benign(0.169) TCGA-XK-AAIW-01 12 6167158 6167158 C T VWF Missense_Mutation p.G529D 0.40 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 12 62749197 62749197 C T USP15 Missense_Mutation p.P286S 0.18 deleterious(0.04) benign(0.034) TCGA-XK-AAIW-01 12 62887726 62887726 G T MON2 Missense_Mutation p.Q69H 0.50 tolerated(0.07) probably_damaging(0.929) TCGA-XK-AAIW-01 12 62960181 62960181 C T MON2 Missense_Mutation p.A1425V 0.23 deleterious(0.04) possibly_damaging(0.777) TCGA-XK-AAIW-01 12 6342621 6342621 C T CD9 Missense_Mutation p.A106V 0.41 deleterious(0.01) possibly_damaging(0.665) TCGA-XK-AAIW-01 12 63544055 63544055 C T AVPR1A Missense_Mutation p.V188I 0.09 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 12 63964619 63964619 G A DPY19L2 Missense_Mutation p.A640V 0.36 deleterious(0) possibly_damaging(0.467) TCGA-XK-AAIW-01 12 64061935 64061935 C T DPY19L2 Missense_Mutation p.G80D 0.31 tolerated_low_confidence(0.08) benign(0.004) TCGA-XK-AAIW-01 12 6438599 6438599 G A TNFRSF1A Missense_Mutation p.A416V 0.45 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 12 6451023 6451023 G A TNFRSF1A 5'UTR 0.29 TCGA-XK-AAIW-01 12 6573937 6573937 G A VAMP1 Intron 0.17 TCGA-XK-AAIW-01 12 66151935 66151935 G A RPSAP52 RNA 0.50 TCGA-XK-AAIW-01 12 6619646 6619646 G A NCAPD2 Intron 0.20 TCGA-XK-AAIW-01 12 6626006 6626006 C T NCAPD2 Missense_Mutation p.R334C 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 6626528 6626528 C T NCAPD2 Intron 0.39 TCGA-XK-AAIW-01 12 662797 662797 G A B4GALNT3 Missense_Mutation p.A570T 0.46 deleterious(0.04) possibly_damaging(0.747) TCGA-XK-AAIW-01 12 662809 662809 C T B4GALNT3 Missense_Mutation p.R574W 0.33 tolerated(0.07) benign(0.01) TCGA-XK-AAIW-01 12 6645760 6645760 G A GAPDH Splice_Site p.X43_splice 0.38 TCGA-XK-AAIW-01 12 66531699 66531699 A T TMBIM4 3'UTR 0.31 TCGA-XK-AAIW-01 12 6657293 6657293 C T IFFO1 Missense_Mutation p.D465N 0.36 deleterious(0.02) possibly_damaging(0.864) TCGA-XK-AAIW-01 12 66620608 66620608 G A IRAK3 Silent p.L253L 0.30 TCGA-XK-AAIW-01 12 66638758 66638758 G A IRAK3 Missense_Mutation p.V373I 0.43 deleterious(0.03) probably_damaging(0.983) TCGA-XK-AAIW-01 12 6666792 6666792 G T NOP2 Silent p.A635A 0.47 TCGA-XK-AAIW-01 12 66717800 66717800 A G HELB Missense_Mutation p.K779E 0.30 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 66849299 66849299 T C GRIP1 Missense_Mutation p.Y363C 0.39 tolerated(0.1) possibly_damaging(0.818) TCGA-XK-AAIW-01 12 6710187 6710187 G T CHD4 Missense_Mutation p.P278T 0.38 deleterious_low_confidence(0.02) benign(0.036) TCGA-XK-AAIW-01 12 6729279 6729279 C T LPAR5 3'UTR 0.35 TCGA-XK-AAIW-01 12 6730347 6730347 C T LPAR5 Missense_Mutation p.R23H 0.40 tolerated(0.82) benign(0.007) TCGA-XK-AAIW-01 12 6782571 6782571 G A ZNF384 Missense_Mutation p.S241L 0.51 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 12 6886538 6886538 C T LAG3 Missense_Mutation p.S389F 0.19 deleterious(0) probably_damaging(0.921) TCGA-XK-AAIW-01 12 6886984 6886984 G A LAG3 Missense_Mutation p.G443D 0.34 tolerated(0.08) benign(0.041) TCGA-XK-AAIW-01 12 69044218 69044218 C T RAP1B Silent p.Y32Y 0.37 TCGA-XK-AAIW-01 12 6909344 6909344 C A CD4 Missense_Mutation p.L14M 0.23 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 69094603 69094603 T C NUP107 Missense_Mutation p.V217A 0.42 tolerated(0.51) benign(0.37) TCGA-XK-AAIW-01 12 69107518 69107518 C A NUP107 Missense_Mutation p.T300N 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 6935455 6935455 G T GPR162 Missense_Mutation p.Q384H 0.40 tolerated(0.13) benign(0.399) TCGA-XK-AAIW-01 12 6948188 6948188 C T LEPREL2 Missense_Mutation p.R643C 0.18 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 12 6954960 6954960 C T GNB3 Missense_Mutation p.R304C 0.35 deleterious(0) benign(0.256) TCGA-XK-AAIW-01 12 6958354 6958354 C T CDCA3 Silent p.R220R 0.30 TCGA-XK-AAIW-01 12 6958585 6958585 G A CDCA3 Missense_Mutation p.R185C 0.49 tolerated(0.12) benign(0.002) TCGA-XK-AAIW-01 12 69653276 69653276 C A CPSF6 Missense_Mutation p.A423E 0.31 deleterious(0.01) possibly_damaging(0.897) TCGA-XK-AAIW-01 12 6967709 6967709 G A USP5 Missense_Mutation p.R329Q 0.32 tolerated(0.32) benign(0.009) TCGA-XK-AAIW-01 12 7028840 7028840 G A ENO2 Missense_Mutation p.D260N 0.48 tolerated_low_confidence(0.13) possibly_damaging(0.784) TCGA-XK-AAIW-01 12 70724123 70724123 G A CNOT2 Missense_Mutation p.G148D 0.47 deleterious(0.02) benign(0.274) TCGA-XK-AAIW-01 12 7079807 7079807 G A PHB2 5'UTR 0.30 TCGA-XK-AAIW-01 12 70954643 70954643 G A PTPRB Missense_Mutation p.P1414S 0.40 tolerated(0.13) benign(0.343) TCGA-XK-AAIW-01 12 70963632 70963632 C T PTPRB Missense_Mutation p.V1153I 0.49 deleterious(0.01) benign(0.11) TCGA-XK-AAIW-01 12 71003069 71003069 C A PTPRB Missense_Mutation p.K253N 0.44 tolerated_low_confidence(0.17) benign(0.003) TCGA-XK-AAIW-01 12 71965341 71965341 G A LGR5 Missense_Mutation p.C373Y 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 71977912 71977912 G A LGR5 Missense_Mutation p.A708T 0.46 tolerated(0.23) benign(0.021) TCGA-XK-AAIW-01 12 72056884 72056884 C T ZFC3H1 Silent p.K169K 0.35 TCGA-XK-AAIW-01 12 72278612 72278612 G A TBC1D15 Missense_Mutation p.G122E 0.29 tolerated(0.77) benign(0.032) TCGA-XK-AAIW-01 12 7254672 7254672 G A C1RL Silent p.V104V 0.33 TCGA-XK-AAIW-01 12 7303555 7303555 C T CLSTN3 Missense_Mutation p.A808V 0.42 tolerated(0.16) benign(0.029) TCGA-XK-AAIW-01 12 7526122 7526122 G A CD163L1 Missense_Mutation p.A1175V 0.41 tolerated(1) benign(0.023) TCGA-XK-AAIW-01 12 75678791 75678791 G A CAPS2 Missense_Mutation p.R508C 0.40 deleterious(0.01) probably_damaging(0.977) TCGA-XK-AAIW-01 12 75728642 75728642 G A GLIPR1L1 Missense_Mutation p.R45H 0.21 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 7635315 7635315 A G CD163 Silent p.L1057L 0.42 TCGA-XK-AAIW-01 12 7639505 7639505 C T CD163 Missense_Mutation p.A710T 0.32 tolerated(0.27) benign(0.033) TCGA-XK-AAIW-01 12 77244672 77244672 C T ZDHHC17 Silent p.C602C 0.32 TCGA-XK-AAIW-01 12 7805382 7805382 G T APOBEC1 Missense_Mutation p.L32I 0.33 deleterious(0.04) probably_damaging(0.92) TCGA-XK-AAIW-01 12 78362427 78362427 G A NAV3 Missense_Mutation p.A206T 0.50 tolerated(0.76) benign(0.001) TCGA-XK-AAIW-01 12 7842906 7842906 G T GDF3 Silent p.T221T 0.24 TCGA-XK-AAIW-01 12 78579429 78579429 G A NAV3 Missense_Mutation p.R1892H 0.35 tolerated(0.2) benign(0.013) TCGA-XK-AAIW-01 12 7894041 7894041 C T CLEC4C Missense_Mutation p.V71I 0.31 tolerated(0.09) benign(0.029) TCGA-XK-AAIW-01 12 80699368 80699368 G A OTOGL Missense_Mutation p.G1067R 0.40 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 80762088 80762088 C T OTOGL Missense_Mutation p.A2196V 0.38 tolerated(0.1) benign(0.012) TCGA-XK-AAIW-01 12 81110770 81110770 C T MYF5 5'UTR 0.40 TCGA-XK-AAIW-01 12 81111197 81111197 C T MYF5 Missense_Mutation p.P119S 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 12 8211772 8211772 G A C3AR1 Missense_Mutation p.T337M 0.36 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 12 8327021 8327021 G A ZNF705A Missense_Mutation p.E38K 0.37 deleterious(0) possibly_damaging(0.874) TCGA-XK-AAIW-01 12 85547499 85547499 C T LRRIQ1 Silent p.L1534L 0.31 TCGA-XK-AAIW-01 12 8608704 8608704 C T CLEC6A 5'UTR 0.28 TCGA-XK-AAIW-01 12 86198984 86198984 C T RASSF9 Silent p.Q268Q 0.16 TCGA-XK-AAIW-01 12 86199651 86199651 C T RASSF9 Missense_Mutation p.R46H 0.37 tolerated(0.51) benign(0.03) TCGA-XK-AAIW-01 12 8757907 8757907 C T AICDA Missense_Mutation p.A111T 0.42 deleterious(0.01) possibly_damaging(0.766) TCGA-XK-AAIW-01 12 88479887 88479887 C T CEP290 Missense_Mutation p.A1456T 0.33 probably_damaging(0.999) TCGA-XK-AAIW-01 12 8906616 8906616 C T RIMKLB Silent p.V208V 0.39 TCGA-XK-AAIW-01 12 90036015 90036015 A G ATP2B1 Missense_Mutation p.V109A 0.24 deleterious(0.03) possibly_damaging(0.616) TCGA-XK-AAIW-01 12 90049658 90049658 G A ATP2B1 Silent p.G2G 0.44 TCGA-XK-AAIW-01 12 9095068 9095068 C A M6PR Nonsense_Mutation p.G219* 0.33 TCGA-XK-AAIW-01 12 91502031 91502031 A G LUM Silent p.A242A 0.13 TCGA-XK-AAIW-01 12 9229987 9229987 G A A2M Silent p.S1102S 0.50 TCGA-XK-AAIW-01 12 9246171 9246171 T C A2M Silent p.S710S 0.40 TCGA-XK-AAIW-01 12 9268505 9268505 C T A2M 5'UTR 0.24 TCGA-XK-AAIW-01 12 93195471 93195471 T - EEA1 Frame_Shift_Del p.T893Lfs*5 0.19 TCGA-XK-AAIW-01 12 93221731 93221731 T C EEA1 Missense_Mutation p.Q454R 0.44 tolerated(0.06) possibly_damaging(0.603) TCGA-XK-AAIW-01 12 939316 939316 G A WNK1 Missense_Mutation p.R434H 0.19 deleterious(0) unknown(0) TCGA-XK-AAIW-01 12 94975842 94975842 C T TMCC3 Missense_Mutation p.S184N 0.13 deleterious(0.04) benign(0.007) TCGA-XK-AAIW-01 12 94976111 94976111 C T TMCC3 Silent p.A94A 0.34 TCGA-XK-AAIW-01 12 95456330 95456330 T C NR2C1 Missense_Mutation p.N80S 0.39 tolerated_low_confidence(0.11) benign(0.257) TCGA-XK-AAIW-01 12 97078927 97078927 G A C12orf55 Silent p.P1975P 0.40 TCGA-XK-AAIW-01 12 97158977 97158977 G A C12orf55 Silent p.S2754S 0.37 TCGA-XK-AAIW-01 12 97306446 97306446 G A NEDD1 Intron 0.52 TCGA-XK-AAIW-01 12 98850033 98850033 G A SLC9A7P1 RNA 0.29 TCGA-XK-AAIW-01 12 99020056 99020056 G A IKBIP Silent p.Y262Y 0.38 TCGA-XK-AAIW-01 12 99056478 99056478 G T APAF1 Missense_Mutation p.E283D 0.35 tolerated(0.06) benign(0.001) TCGA-XK-AAIW-01 12 99837486 99837486 C T ANKS1B Missense_Mutation p.A514T 0.12 deleterious(0.01) possibly_damaging(0.77) TCGA-XK-AAIW-01 13 100206622 100206622 C T TM9SF2 Missense_Mutation p.T518M 0.39 tolerated(0.9) probably_damaging(0.975) TCGA-XK-AAIW-01 13 101077940 101077940 G A PCCA Silent p.S600S 0.17 TCGA-XK-AAIW-01 13 101742291 101742291 T C NALCN Missense_Mutation p.D1099G 0.42 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 13 102368078 102368078 T C ITGBL1 3'UTR 0.39 TCGA-XK-AAIW-01 13 103443702 103443702 G T KDELC1 Missense_Mutation p.H251N 0.11 tolerated(0.29) benign(0.112) TCGA-XK-AAIW-01 13 107145456 107145456 C T EFNB2 Missense_Mutation p.G312R 0.45 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 13 108518288 108518288 C T FAM155A Silent p.S219S 0.40 TCGA-XK-AAIW-01 13 108861786 108861786 C T LIG4 Missense_Mutation p.A611T 0.40 tolerated(0.19) benign(0.079) TCGA-XK-AAIW-01 13 108862959 108862959 C T LIG4 Missense_Mutation p.D220N 0.31 tolerated(0.44) benign(0.147) TCGA-XK-AAIW-01 13 109779684 109779684 C T MYO16 Silent p.C1257C 0.45 TCGA-XK-AAIW-01 13 111080821 111080821 C T COL4A2 Missense_Mutation p.P123L 0.27 probably_damaging(0.955) TCGA-XK-AAIW-01 13 111279791 111279791 G A CARKD Missense_Mutation p.S131N 0.36 deleterious(0.04) benign(0.083) TCGA-XK-AAIW-01 13 111357885 111357885 C T CARS2 Silent p.A86A 0.34 TCGA-XK-AAIW-01 13 111371749 111371749 C T ING1 Missense_Mutation p.R247W 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 13 113208477 113208477 A G TUBGCP3 Missense_Mutation p.L287S 0.50 tolerated(0.44) benign(0.356) TCGA-XK-AAIW-01 13 113478730 113478730 C T ATP11A Missense_Mutation p.A288V 0.48 deleterious(0.04) benign(0.046) TCGA-XK-AAIW-01 13 113479755 113479755 C T ATP11A Missense_Mutation p.A295V 0.34 tolerated(0.34) benign(0.005) TCGA-XK-AAIW-01 13 113487330 113487330 G A ATP11A Missense_Mutation p.V518I 0.39 tolerated(0.17) benign(0.001) TCGA-XK-AAIW-01 13 113512221 113512221 G A ATP11A Silent p.A836A 0.18 TCGA-XK-AAIW-01 13 113741739 113741739 C A MCF2L Missense_Mutation p.A855D 0.50 deleterious(0.04) possibly_damaging(0.906) TCGA-XK-AAIW-01 13 113748834 113748834 G A MCF2L Missense_Mutation p.S987N 0.40 tolerated(0.36) benign(0.018) TCGA-XK-AAIW-01 13 113803437 113803437 C T F10 Missense_Mutation p.T358M 0.30 tolerated(0.15) probably_damaging(0.932) TCGA-XK-AAIW-01 13 113976601 113976601 G T LAMP1 Missense_Mutation p.E373D 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 13 114009752 114009752 G A GRTP1 Missense_Mutation p.R76C 0.36 deleterious(0.04) benign(0.035) TCGA-XK-AAIW-01 13 114112358 114112358 G A DCUN1D2 Missense_Mutation p.R256C 0.12 deleterious(0.02) benign(0.339) TCGA-XK-AAIW-01 13 114164673 114164673 C A TMCO3 Missense_Mutation p.L387M 0.46 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 13 114201677 114201677 T C TMCO3 Missense_Mutation p.S585P 0.43 tolerated(0.11) benign(0.319) TCGA-XK-AAIW-01 13 114288234 114288234 C T TFDP1 Silent p.R168R 0.19 TCGA-XK-AAIW-01 13 114469150 114469150 G A TMEM255B Missense_Mutation p.V37I 0.13 tolerated(0.36) benign(0.006) TCGA-XK-AAIW-01 13 114757965 114757965 C T RASA3 Missense_Mutation p.M747I 0.43 tolerated(0.09) probably_damaging(0.943) TCGA-XK-AAIW-01 13 115037980 115037980 C T CDC16 Intron 0.29 TCGA-XK-AAIW-01 13 19751146 19751146 T A TUBA3C Missense_Mutation p.K326I 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-XK-AAIW-01 13 20006632 20006632 G A TPTE2 Silent p.F401F 0.22 TCGA-XK-AAIW-01 13 20398614 20398614 A G ZMYM5 3'UTR 0.42 TCGA-XK-AAIW-01 13 20399047 20399047 C T ZMYM5 Missense_Mutation p.R527Q 0.35 deleterious(0.03) probably_damaging(0.994) TCGA-XK-AAIW-01 13 20797027 20797027 G A GJB6 Missense_Mutation p.A198V 0.40 tolerated(0.28) benign(0.014) TCGA-XK-AAIW-01 13 20797512 20797512 G A GJB6 Silent p.L36L 0.41 TCGA-XK-AAIW-01 13 20987517 20987517 C T CRYL1 Missense_Mutation p.V215M 0.24 deleterious_low_confidence(0) possibly_damaging(0.48) TCGA-XK-AAIW-01 13 21199953 21199953 G A IFT88 Missense_Mutation p.A431T 0.45 deleterious(0) probably_damaging(0.979) TCGA-XK-AAIW-01 13 21396280 21396280 G T XPO4 Missense_Mutation p.T330N 0.47 deleterious(0.01) benign(0.005) TCGA-XK-AAIW-01 13 21746495 21746495 C T SKA3 Missense_Mutation p.R105H 0.35 tolerated(0.14) probably_damaging(0.972) TCGA-XK-AAIW-01 13 22069324 22069324 T C MICU2 Silent p.K392K 0.47 TCGA-XK-AAIW-01 13 22275705 22275705 T C FGF9 3'UTR 0.47 TCGA-XK-AAIW-01 13 23929388 23929388 C T SACS Missense_Mutation p.E455K 0.40 probably_damaging(0.989) TCGA-XK-AAIW-01 13 24242129 24242129 C T TNFRSF19 Silent p.R249R 0.30 TCGA-XK-AAIW-01 13 24465850 24465850 C T C1QTNF9B Missense_Mutation p.G194S 0.08 deleterious(0.03) possibly_damaging(0.762) TCGA-XK-AAIW-01 13 24860352 24860352 C T SPATA13 Silent p.L768L 0.27 TCGA-XK-AAIW-01 13 24890279 24890279 C T C1QTNF9 Silent p.D46D 0.51 TCGA-XK-AAIW-01 13 25026729 25026729 A T PARP4 Silent p.S943S 0.22 TCGA-XK-AAIW-01 13 25051910 25051910 T A PARP4 Missense_Mutation p.D573V 0.42 deleterious(0.02) benign(0.194) TCGA-XK-AAIW-01 13 25480619 25480619 C T CENPJ Silent p.K519K 0.31 TCGA-XK-AAIW-01 13 25486986 25486986 G A CENPJ Missense_Mutation p.H60Y 0.32 deleterious(0.04) benign(0.01) TCGA-XK-AAIW-01 13 25881944 25881944 C A NUPL1 Missense_Mutation p.S36R 0.43 deleterious(0.01) unknown(0) TCGA-XK-AAIW-01 13 25887831 25887831 G A NUPL1 Silent p.G172G 0.25 TCGA-XK-AAIW-01 13 26620664 26620664 G A SHISA2 Missense_Mutation p.A292V 0.47 deleterious(0.05) possibly_damaging(0.85) TCGA-XK-AAIW-01 13 26621051 26621051 G A SHISA2 Missense_Mutation p.T163I 0.34 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 13 26793670 26793670 G T RNF6 Silent p.A39A 0.37 TCGA-XK-AAIW-01 13 27333935 27333935 G A GPR12 Silent p.S10S 0.44 TCGA-XK-AAIW-01 13 27669938 27669938 C T USP12 Missense_Mutation p.A125T 0.26 deleterious(0.01) probably_damaging(0.979) TCGA-XK-AAIW-01 13 28367779 28367779 G A GSX1 Silent p.E163E 0.33 TCGA-XK-AAIW-01 13 28601284 28601284 C T FLT3 Silent p.E716E 0.48 TCGA-XK-AAIW-01 13 29001909 29001909 G T FLT1 Missense_Mutation p.T419N 0.42 tolerated(0.13) probably_damaging(0.992) TCGA-XK-AAIW-01 13 29001983 29001983 G A FLT1 Silent p.D394D 0.36 TCGA-XK-AAIW-01 13 29287060 29287061 - A SLC46A3 Frame_Shift_Ins p.V273Cfs*13 0.41 TCGA-XK-AAIW-01 13 29292061 29292061 C T SLC46A3 Silent p.T25T 0.37 TCGA-XK-AAIW-01 13 29598970 29598970 C T MTUS2 Silent p.S55S 0.30 TCGA-XK-AAIW-01 13 29599505 29599505 G A MTUS2 Missense_Mutation p.A234T 0.58 tolerated(0.55) benign(0.005) TCGA-XK-AAIW-01 13 29600325 29600325 G A MTUS2 Missense_Mutation p.R507Q 0.30 tolerated(0.44) benign(0.091) TCGA-XK-AAIW-01 13 30091325 30091325 C T SLC7A1 Missense_Mutation p.V545I 0.48 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 13 31035356 31035356 A - HMGB1 3'UTR 0.26 TCGA-XK-AAIW-01 13 31035706 31035707 - A HMGB1 Intron 0.38 TCGA-XK-AAIW-01 13 31205109 31205110 - A USPL1 Frame_Shift_Ins p.T125Dfs*2 0.30 TCGA-XK-AAIW-01 13 31480611 31480611 C T MEDAG 5'UTR 0.44 TCGA-XK-AAIW-01 13 31724105 31724105 C A HSPH1 Nonsense_Mutation p.G375* 0.35 TCGA-XK-AAIW-01 13 31724164 31724164 G A HSPH1 Missense_Mutation p.A355V 0.47 tolerated(0.09) probably_damaging(0.92) TCGA-XK-AAIW-01 13 32527390 32527390 G T EEF1DP3 RNA 0.14 TCGA-XK-AAIW-01 13 32836467 32836467 C T FRY Missense_Mutation p.P2545L 0.44 deleterious(0) benign(0.005) TCGA-XK-AAIW-01 13 32915317 32915317 G T BRCA2 Missense_Mutation p.E2275D 0.40 tolerated(0.89) benign(0.002) TCGA-XK-AAIW-01 13 33002284 33002284 C T N4BP2L1 5'UTR 0.30 TCGA-XK-AAIW-01 13 33261280 33261280 C T PDS5B Missense_Mutation p.R405C 0.22 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 13 33679626 33679626 G A STARD13 3'UTR 0.33 TCGA-XK-AAIW-01 13 34404122 34404122 G A RFC3 Missense_Mutation p.A181T 0.34 tolerated(0.64) benign(0.008) TCGA-XK-AAIW-01 13 36049680 36049680 C T MAB21L1 Missense_Mutation p.R199Q 0.32 tolerated(0.32) benign(0.301) TCGA-XK-AAIW-01 13 36049744 36049744 C T MAB21L1 Missense_Mutation p.G178R 0.18 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 13 36700137 36700137 C T DCLK1 Silent p.T46T 0.40 TCGA-XK-AAIW-01 13 38154121 38154121 G T POSTN Missense_Mutation p.L513I 0.42 deleterious(0.02) possibly_damaging(0.626) TCGA-XK-AAIW-01 13 38211514 38211514 G A TRPC4 Silent p.G825G 0.33 TCGA-XK-AAIW-01 13 39263301 39263301 C T FREM2 Missense_Mutation p.T607M 0.44 tolerated(0.12) benign(0.009) TCGA-XK-AAIW-01 13 39263574 39263574 G A FREM2 Missense_Mutation p.R698H 0.49 tolerated(0.2) benign(0.002) TCGA-XK-AAIW-01 13 39265208 39265208 A G FREM2 Missense_Mutation p.I1243V 0.49 tolerated(0.47) benign(0.001) TCGA-XK-AAIW-01 13 39433688 39433688 G A FREM2 Missense_Mutation p.E2494K 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 13 39586877 39586877 C T PROSER1 Missense_Mutation p.A838T 0.26 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 13 40263922 40263922 T C COG6 Silent p.V345V 0.42 TCGA-XK-AAIW-01 13 41134687 41134687 C T FOXO1 Missense_Mutation p.R314H 0.48 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 13 41705280 41705280 G A KBTBD6 Silent p.C456C 0.10 TCGA-XK-AAIW-01 13 41766371 41766371 G A KBTBD7 Nonsense_Mutation p.R675* 0.46 TCGA-XK-AAIW-01 13 41766626 41766626 T C KBTBD7 Missense_Mutation p.T590A 0.45 tolerated(0.73) benign(0.001) TCGA-XK-AAIW-01 13 41768203 41768203 T A KBTBD7 Missense_Mutation p.D64V 0.27 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 13 41947883 41947883 C T NAA16 Missense_Mutation p.R756C 0.36 deleterious(0.01) benign(0.339) TCGA-XK-AAIW-01 13 41949820 41949820 G A NAA16 3'UTR 0.40 TCGA-XK-AAIW-01 13 42185773 42185773 C T VWA8 Missense_Mutation p.A1606T 0.42 deleterious(0.04) possibly_damaging(0.806) TCGA-XK-AAIW-01 13 42273290 42273290 C T VWA8 Missense_Mutation p.A1161T 0.42 tolerated(0.7) benign(0.001) TCGA-XK-AAIW-01 13 42460072 42460072 G A VWA8 Missense_Mutation p.A320V 0.38 tolerated(0.19) benign(0.011) TCGA-XK-AAIW-01 13 42761257 42761257 C T DGKH Silent p.A537A 0.38 TCGA-XK-AAIW-01 13 42793372 42793372 G A DGKH Missense_Mutation p.E1074K 0.36 tolerated(0.08) benign(0.437) TCGA-XK-AAIW-01 13 43986126 43986126 G T ENOX1 Missense_Mutation p.P45H 0.55 tolerated(0.36) benign(0.002) TCGA-XK-AAIW-01 13 45148315 45148315 C A TSC22D1 Missense_Mutation p.Q632H 0.38 tolerated(0.08) benign(0.002) TCGA-XK-AAIW-01 13 45913709 45913709 G A TPT1 Missense_Mutation p.P108S 0.20 tolerated(0.06) possibly_damaging(0.465) TCGA-XK-AAIW-01 13 46357673 46357673 G A SIAH3 Missense_Mutation p.R219W 0.36 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 13 46935656 46935656 A G KIAA0226L Missense_Mutation p.Y347H 0.46 deleterious(0.01) probably_damaging(0.95) TCGA-XK-AAIW-01 13 46937275 46937275 G A KIAA0226L Silent p.C300C 0.43 TCGA-XK-AAIW-01 13 46942206 46942206 G T KIAA0226L Missense_Mutation p.S266Y 0.37 deleterious(0) probably_damaging(0.95) TCGA-XK-AAIW-01 13 47286659 47286659 G A LRCH1 Splice_Site p.X528_splice 0.42 TCGA-XK-AAIW-01 13 47315857 47315857 C T LRCH1 Silent p.L722L 0.41 TCGA-XK-AAIW-01 13 47470078 47470078 G T HTR2A 5'UTR 0.32 TCGA-XK-AAIW-01 13 48523739 48523739 C T SUCLA2 Splice_Site p.X370_splice 0.18 TCGA-XK-AAIW-01 13 49772313 49772313 A G FNDC3A Missense_Mutation p.S896G 0.45 deleterious(0.05) benign(0.025) TCGA-XK-AAIW-01 13 49795147 49795147 C T MLNR Missense_Mutation p.A225V 0.48 tolerated(0.17) benign(0.013) TCGA-XK-AAIW-01 13 49795157 49795157 G A MLNR Silent p.A228A 0.17 TCGA-XK-AAIW-01 13 49956951 49956951 G A CAB39L Silent p.D32D 0.32 TCGA-XK-AAIW-01 13 50204664 50204664 G A ARL11 Silent p.T27T 0.47 TCGA-XK-AAIW-01 13 51855375 51855375 G A FAM124A Missense_Mutation p.E578K 0.42 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XK-AAIW-01 13 52539084 52539084 G A ATP7B Missense_Mutation p.A598V 0.37 deleterious(0.02) benign(0.306) TCGA-XK-AAIW-01 13 52548294 52548294 G A ATP7B Silent p.V354V 0.12 TCGA-XK-AAIW-01 13 52971414 52971414 C T THSD1 Missense_Mutation p.S325N 0.18 tolerated(0.05) possibly_damaging(0.756) TCGA-XK-AAIW-01 13 53420780 53420780 G A PCDH8 Missense_Mutation p.R598C 0.50 deleterious(0) benign(0.16) TCGA-XK-AAIW-01 13 67800963 67800963 C T PCDH9 Missense_Mutation p.R537Q 0.77 deleterious(0.05) probably_damaging(0.936) TCGA-XK-AAIW-01 13 67801545 67801545 G A PCDH9 Missense_Mutation p.T343M 0.68 tolerated(0.35) possibly_damaging(0.494) TCGA-XK-AAIW-01 13 67802360 67802360 C T PCDH9 Silent p.G71G 0.71 TCGA-XK-AAIW-01 13 73346001 73346001 T C DIS3 Missense_Mutation p.I513V 0.06 tolerated(1) benign(0.268) TCGA-XK-AAIW-01 13 73572995 73572995 G A PIBF1 Missense_Mutation p.M695I 0.67 deleterious(0.03) probably_damaging(0.946) TCGA-XK-AAIW-01 13 77629784 77629784 G A MYCBP2 Missense_Mutation p.A4481V 0.63 probably_damaging(0.978) TCGA-XK-AAIW-01 13 77671856 77671856 A G MYCBP2 Missense_Mutation p.S3107P 0.69 benign(0.029) TCGA-XK-AAIW-01 13 77713379 77713379 G A MYCBP2 Silent p.C2499C 0.71 TCGA-XK-AAIW-01 13 77835490 77835490 G A MYCBP2 Silent p.Y518Y 0.72 TCGA-XK-AAIW-01 13 78216886 78216886 A G SCEL Missense_Mutation p.S665G 0.61 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 13 79176630 79176630 C T POU4F1 Silent p.A60A 0.67 TCGA-XK-AAIW-01 13 84453636 84453636 G C SLITRK1 Missense_Mutation p.D669E 0.27 tolerated(0.26) benign(0.039) TCGA-XK-AAIW-01 13 86367995 86367995 C T SLITRK6 3'UTR 0.78 TCGA-XK-AAIW-01 13 95092100 95092100 C T DCT 3'UTR 0.59 TCGA-XK-AAIW-01 13 96443194 96443194 C T DNAJC3 Silent p.G475G 0.68 TCGA-XK-AAIW-01 13 98645159 98645159 C T IPO5 Missense_Mutation p.S246L 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 13 98660391 98660391 C T IPO5 Missense_Mutation p.P617S 0.36 deleterious(0) benign(0.212) TCGA-XK-AAIW-01 13 98829521 98829521 C T FARP1 Intron 0.29 TCGA-XK-AAIW-01 13 99091369 99091369 C T FARP1 Silent p.D784D 0.36 TCGA-XK-AAIW-01 13 99481631 99481631 G A DOCK9 Missense_Mutation p.T1609M 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 13 99481710 99481710 C T DOCK9 Missense_Mutation p.A1583T 0.45 deleterious(0.03) possibly_damaging(0.871) TCGA-XK-AAIW-01 13 99549847 99549847 G A DOCK9 Missense_Mutation p.A535V 0.33 tolerated(0.52) benign(0.279) TCGA-XK-AAIW-01 13 99907245 99907245 C A GPR18 Missense_Mutation p.Q294H 0.37 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 14 100615732 100615732 C T DEGS2 Missense_Mutation p.R133H 0.56 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 100705584 100705584 G A YY1 Translation_Start_Site p.M1? 0.33 deleterious(0) unknown(0) TCGA-XK-AAIW-01 14 100950458 100950458 C T WDR25 Silent p.G366G 0.36 TCGA-XK-AAIW-01 14 100992319 100992319 G A WDR25 Missense_Mutation p.R405H 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-XK-AAIW-01 14 101435337 101435337 G A SNORD114-12 RNA 0.13 TCGA-XK-AAIW-01 14 101450261 101450261 C T SNORD114-23 RNA 0.39 TCGA-XK-AAIW-01 14 101492098 101492098 G A MIR323A RNA 0.20 TCGA-XK-AAIW-01 14 102476656 102476656 G A DYNC1H1 Missense_Mutation p.G2089S 0.31 probably_damaging(0.999) TCGA-XK-AAIW-01 14 102484834 102484834 G A DYNC1H1 Missense_Mutation p.A2742T 0.37 benign(0.01) TCGA-XK-AAIW-01 14 102494416 102494416 C T DYNC1H1 Missense_Mutation p.P3136S 0.47 benign(0.178) TCGA-XK-AAIW-01 14 102516426 102516426 C T DYNC1H1 Missense_Mutation p.A4568V 0.44 possibly_damaging(0.855) TCGA-XK-AAIW-01 14 102695636 102695636 C T MOK Missense_Mutation p.G417D 0.40 deleterious(0.05) benign(0.033) TCGA-XK-AAIW-01 14 102792380 102792380 C T ZNF839 Missense_Mutation p.P116L 0.33 deleterious(0.04) benign(0.134) TCGA-XK-AAIW-01 14 102792778 102792778 C T ZNF839 Missense_Mutation p.R249C 0.59 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 102798054 102798054 C T ZNF839 Silent p.R429R 0.33 TCGA-XK-AAIW-01 14 102843240 102843240 G A TECPR2 Missense_Mutation p.C61Y 0.50 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 14 103406213 103406213 G A CDC42BPB Missense_Mutation p.R1555W 0.42 deleterious(0.03) benign(0.004) TCGA-XK-AAIW-01 14 103410511 103410511 G A CDC42BPB Silent p.S1375S 0.33 TCGA-XK-AAIW-01 14 103803076 103803076 C T EIF5 Missense_Mutation p.R73C 0.37 deleterious(0.02) probably_damaging(0.961) TCGA-XK-AAIW-01 14 104139525 104139525 G A KLC1 Splice_Site p.X387_splice 0.44 TCGA-XK-AAIW-01 14 104209063 104209063 C A PPP1R13B Missense_Mutation p.E416D 0.42 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 14 104219354 104219354 G A PPP1R13B Silent p.L271L 0.34 TCGA-XK-AAIW-01 14 104224075 104224075 C T PPP1R13B Missense_Mutation p.R123H 0.41 deleterious(0) benign(0.008) TCGA-XK-AAIW-01 14 104474749 104474749 G T TDRD9 Splice_Site p.X685_splice 0.12 TCGA-XK-AAIW-01 14 104618479 104618479 C T KIF26A Missense_Mutation p.A139V 0.45 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 14 105179320 105179320 C T INF2 Silent p.R922R 0.35 TCGA-XK-AAIW-01 14 105208270 105208270 C T ADSSL1 Silent p.D336D 0.12 TCGA-XK-AAIW-01 14 105353125 105353125 C T CEP170B Missense_Mutation p.P850L 0.13 deleterious(0.04) benign(0.098) TCGA-XK-AAIW-01 14 105410919 105410919 G A AHNAK2 Silent p.D3623D 0.36 TCGA-XK-AAIW-01 14 105411028 105411028 C T AHNAK2 Missense_Mutation p.G3587D 0.45 probably_damaging(0.969) TCGA-XK-AAIW-01 14 105411328 105411328 G A AHNAK2 Missense_Mutation p.A3487V 0.37 benign(0.009) TCGA-XK-AAIW-01 14 105412499 105412499 C T AHNAK2 Missense_Mutation p.V3097M 0.49 probably_damaging(0.995) TCGA-XK-AAIW-01 14 105413601 105413601 C T AHNAK2 Silent p.G2729G 0.45 TCGA-XK-AAIW-01 14 105418103 105418103 C T AHNAK2 Missense_Mutation p.V1229M 0.82 possibly_damaging(0.746) TCGA-XK-AAIW-01 14 105420184 105420184 G A AHNAK2 Missense_Mutation p.A535V 0.46 benign(0.234) TCGA-XK-AAIW-01 14 105615403 105615403 C T JAG2 Missense_Mutation p.A593T 0.33 tolerated(0.77) benign(0.003) TCGA-XK-AAIW-01 14 105643040 105643040 G A NUDT14 Missense_Mutation p.R87W 0.36 tolerated(0.26) possibly_damaging(0.616) TCGA-XK-AAIW-01 14 105849203 105849203 G A PACS2 Silent p.A526A 0.37 TCGA-XK-AAIW-01 14 105960184 105960184 A G C14orf80 Missense_Mutation p.T200A 0.19 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 14 106090913 106090913 C T IGHG4 Missense_Mutation p.S295N 0.41 tolerated(0.33) benign(0.004) TCGA-XK-AAIW-01 14 106330039 106330039 C T IGHJ5 Missense_Mutation p.V12I 0.41 possibly_damaging(0.884) TCGA-XK-AAIW-01 14 106494574 106494574 C T IGHV2-5 Missense_Mutation p.D2N 0.43 tolerated(0.71) benign(0.382) TCGA-XK-AAIW-01 14 106967495 106967495 T G IGHV1-46 5'UTR 0.39 TCGA-XK-AAIW-01 14 20248781 20248781 G A OR4M1 Silent p.Q100Q 0.35 TCGA-XK-AAIW-01 14 20444037 20444037 C A OR4K15 Silent p.A120A 0.23 TCGA-XK-AAIW-01 14 20444660 20444660 G A OR4K15 Missense_Mutation p.R328Q 0.39 tolerated(0.81) benign(0.001) TCGA-XK-AAIW-01 14 20482668 20482668 G A OR4K14 Missense_Mutation p.R229C 0.23 deleterious(0.02) possibly_damaging(0.849) TCGA-XK-AAIW-01 14 20528812 20528812 C T OR4L1 Silent p.S203S 0.38 TCGA-XK-AAIW-01 14 20586419 20586419 G A OR4K17 Missense_Mutation p.C285Y 0.37 deleterious(0) possibly_damaging(0.871) TCGA-XK-AAIW-01 14 20779703 20779703 C T CCNB1IP1 3'UTR 0.14 TCGA-XK-AAIW-01 14 20871916 20871916 G A TEP1 Missense_Mutation p.A387V 0.36 tolerated(0.08) probably_damaging(0.981) TCGA-XK-AAIW-01 14 20871919 20871919 C T TEP1 Missense_Mutation p.R386Q 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 21541329 21541329 C T ARHGEF40 Silent p.D43D 0.32 TCGA-XK-AAIW-01 14 21543039 21543039 C T ARHGEF40 Nonsense_Mutation p.R384* 0.33 TCGA-XK-AAIW-01 14 21561142 21561142 C T ZNF219 Missense_Mutation p.R105H 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 14 21779073 21779073 G A RPGRIP1 Intron 0.36 TCGA-XK-AAIW-01 14 21829364 21829364 C T SUPT16H Missense_Mutation p.R601Q 0.35 deleterious(0) probably_damaging(0.967) TCGA-XK-AAIW-01 14 21860888 21860888 C A CHD8 Missense_Mutation p.Q2183H 0.14 tolerated(0.34) benign(0.216) TCGA-XK-AAIW-01 14 21861824 21861824 G A CHD8 Nonsense_Mutation p.R2044* 0.29 TCGA-XK-AAIW-01 14 21993240 21993240 G T SALL2 Missense_Mutation p.L208M 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 14 21993740 21993740 G A SALL2 Missense_Mutation p.A41V 0.37 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 14 22038126 22038126 G A OR10G3 Silent p.T250T 0.32 TCGA-XK-AAIW-01 14 22102883 22102883 T C OR10G2 Missense_Mutation p.Y39C 0.46 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 14 22466279 22466279 G A TRAV17 Missense_Mutation p.R70H 0.32 tolerated(0.13) benign(0.023) TCGA-XK-AAIW-01 14 22580421 22580421 C T TRAV25 Nonsense_Mutation p.Q16* 0.45 TCGA-XK-AAIW-01 14 22592198 22592198 G A TRAV26-1 Missense_Mutation p.A95T 0.44 deleterious(0.01) benign(0.294) TCGA-XK-AAIW-01 14 22631699 22631699 G T TRAV29DV5 Missense_Mutation p.K97N 0.50 deleterious(0.01) benign(0.35) TCGA-XK-AAIW-01 14 22676003 22676003 C T TRAV34 Silent p.G105G 0.55 TCGA-XK-AAIW-01 14 22695104 22695104 G T TRAV36DV7 Missense_Mutation p.A99S 0.43 tolerated(0.38) benign(0.2) TCGA-XK-AAIW-01 14 22740374 22740374 A G TRAV38-1 Missense_Mutation p.K93R 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-XK-AAIW-01 14 22788991 22788991 G A TRAV41 Silent p.L68L 0.27 TCGA-XK-AAIW-01 14 22962402 22962402 C T TRAJ46 Silent p.S5S 0.62 TCGA-XK-AAIW-01 14 23020994 23020994 C T AE000662.92 5'Flank 0.42 TCGA-XK-AAIW-01 14 23282294 23282294 G A SLC7A7 Missense_Mutation p.A105V 0.36 deleterious(0) possibly_damaging(0.859) TCGA-XK-AAIW-01 14 23396015 23396015 C T PRMT5 Missense_Mutation p.M153I 0.48 tolerated(0.66) benign(0) TCGA-XK-AAIW-01 14 23444069 23444069 G A AJUBA Silent p.G467G 0.46 TCGA-XK-AAIW-01 14 23465326 23465326 C T C14orf93 Missense_Mutation p.R250H 0.39 tolerated_low_confidence(0.19) benign(0.001) TCGA-XK-AAIW-01 14 23503907 23503907 T C PSMB5 Missense_Mutation p.T62A 0.23 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 14 23512147 23512147 G A PSMB11 Missense_Mutation p.R238H 0.58 tolerated(0.11) benign(0.064) TCGA-XK-AAIW-01 14 23528662 23528662 G A ACIN1 Missense_Mutation p.R1241W 0.43 unknown(0) TCGA-XK-AAIW-01 14 23528663 23528663 C T ACIN1 Silent p.E1240E 0.40 TCGA-XK-AAIW-01 14 23530582 23530582 G A ACIN1 Missense_Mutation p.R1175C 0.34 probably_damaging(0.993) TCGA-XK-AAIW-01 14 23530642 23530642 G A ACIN1 Missense_Mutation p.R1155W 0.12 probably_damaging(0.993) TCGA-XK-AAIW-01 14 23586748 23586748 C T CEBPE Missense_Mutation p.R265H 0.41 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 14 23745118 23745118 G T HOMEZ Missense_Mutation p.P440Q 0.38 tolerated(0.12) possibly_damaging(0.649) TCGA-XK-AAIW-01 14 23816920 23816920 C T SLC22A17 Missense_Mutation p.R322H 0.48 tolerated(0.17) benign(0.003) TCGA-XK-AAIW-01 14 23853677 23853677 G A MYH6 Missense_Mutation p.R1847W 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 23853760 23853760 G A MYH6 Missense_Mutation p.A1819V 0.21 tolerated(0.06) benign(0.045) TCGA-XK-AAIW-01 14 23858175 23858175 C T MYH6 Silent p.K1356K 0.25 TCGA-XK-AAIW-01 14 23888705 23888705 C T MYH7 Silent p.L1280L 0.27 TCGA-XK-AAIW-01 14 23894603 23894603 C A MYH7 Missense_Mutation p.G771W 0.25 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 24033829 24033829 G A AP1G2 Missense_Mutation p.A288V 0.46 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 14 24459436 24459436 C T DHRS4L2 Silent p.H58H 0.34 TCGA-XK-AAIW-01 14 24470245 24470245 C T DHRS4L2 Silent p.G161G 0.25 TCGA-XK-AAIW-01 14 24524777 24524777 C T LRRC16B Silent p.L211L 0.46 TCGA-XK-AAIW-01 14 24532006 24532006 G A LRRC16B Missense_Mutation p.R886Q 0.45 tolerated(0.21) benign(0.007) TCGA-XK-AAIW-01 14 24588974 24588974 C T DCAF11 Nonsense_Mutation p.Q321* 0.44 TCGA-XK-AAIW-01 14 24589002 24589002 C T DCAF11 Missense_Mutation p.A330V 0.34 tolerated(0.1) benign(0.348) TCGA-XK-AAIW-01 14 24626800 24626800 C T RNF31 Missense_Mutation p.R894C 0.43 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 14 24633987 24633987 C T IRF9 Silent p.L272L 0.45 TCGA-XK-AAIW-01 14 24658773 24658773 G A TM9SF1 Missense_Mutation p.R557C 0.28 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 14 24791325 24791325 C T ADCY4 Missense_Mutation p.V845M 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-XK-AAIW-01 14 24897110 24897110 G T CBLN3 Missense_Mutation p.S168Y 0.38 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 14 24900107 24900107 G T KHNYN Missense_Mutation p.E57D 0.50 deleterious(0) benign(0.017) TCGA-XK-AAIW-01 14 24909614 24909614 C T SDR39U1 Missense_Mutation p.G186D 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 25288249 25288249 C T STXBP6 Silent p.A201A 0.33 TCGA-XK-AAIW-01 14 26917902 26917902 C T NOVA1 Missense_Mutation p.A263T 0.36 deleterious(0) unknown(0) TCGA-XK-AAIW-01 14 26949206 26949206 C T NOVA1 Missense_Mutation p.V142I 0.30 tolerated(0.52) unknown(0) TCGA-XK-AAIW-01 14 29237798 29237798 C T FOXG1 Missense_Mutation p.A438V 0.41 deleterious_low_confidence(0.03) benign(0.066) TCGA-XK-AAIW-01 14 31188567 31188567 C T SCFD1 Silent p.L574L 0.36 TCGA-XK-AAIW-01 14 31355287 31355287 C T COCH Missense_Mutation p.R416C 0.38 deleterious(0) possibly_damaging(0.837) TCGA-XK-AAIW-01 14 31578798 31578798 T C HECTD1 Missense_Mutation p.I2095M 0.48 deleterious(0) probably_damaging(0.948) TCGA-XK-AAIW-01 14 31613366 31613366 T C HECTD1 Missense_Mutation p.E910G 0.45 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 14 31614086 31614086 C T HECTD1 Missense_Mutation p.R853H 0.41 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 14 31763122 31763122 C A RP11-596D21.1 Intron 0.24 TCGA-XK-AAIW-01 14 31813196 31813196 C T HEATR5A Missense_Mutation p.C752Y 0.39 tolerated(0.26) benign(0.044) TCGA-XK-AAIW-01 14 31855778 31855778 G T HEATR5A Missense_Mutation p.A105D 0.34 tolerated(0.13) possibly_damaging(0.791) TCGA-XK-AAIW-01 14 32561826 32561826 G A ARHGAP5 Missense_Mutation p.A651T 0.25 tolerated(0.1) benign(0.002) TCGA-XK-AAIW-01 14 32902725 32902725 C - AKAP6 Frame_Shift_Del p.L11* 0.36 TCGA-XK-AAIW-01 14 33015926 33015926 G A AKAP6 Silent p.K689K 0.31 TCGA-XK-AAIW-01 14 33201840 33201840 G A AKAP6 Intron 0.34 TCGA-XK-AAIW-01 14 34269142 34269142 C T NPAS3 Silent p.G543G 0.30 TCGA-XK-AAIW-01 14 34419698 34419698 G A EGLN3 Silent p.G87G 0.24 TCGA-XK-AAIW-01 14 36103833 36103833 G T RALGAPA1 Missense_Mutation p.P1475H 0.42 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 14 36104725 36104725 G T RALGAPA1 Missense_Mutation p.A1413D 0.11 tolerated(0.05) benign(0.029) TCGA-XK-AAIW-01 14 36988568 36988568 G A NKX2-1 Nonsense_Mutation p.R29* 0.25 TCGA-XK-AAIW-01 14 37145538 37145538 C T PAX9 Nonsense_Mutation p.Q303* 0.41 TCGA-XK-AAIW-01 14 38061877 38061877 G A FOXA1 Silent p.L38L 0.36 TCGA-XK-AAIW-01 14 38273919 38273919 C T TTC6 Missense_Mutation p.A1355V 0.46 tolerated(0.37) benign(0.039) TCGA-XK-AAIW-01 14 38679094 38679094 G A SSTR1 Missense_Mutation p.R167H 0.39 deleterious(0.01) possibly_damaging(0.703) TCGA-XK-AAIW-01 14 38679546 38679546 G A SSTR1 Missense_Mutation p.A318T 0.44 deleterious(0.04) probably_damaging(0.989) TCGA-XK-AAIW-01 14 38724474 38724474 G A CLEC14A Missense_Mutation p.R252C 0.37 deleterious(0.02) probably_damaging(0.931) TCGA-XK-AAIW-01 14 39536389 39536389 C T SEC23A Silent p.T405T 0.33 TCGA-XK-AAIW-01 14 39647050 39647050 G A PNN Missense_Mutation p.R143Q 0.38 deleterious(0) benign(0.282) TCGA-XK-AAIW-01 14 39871008 39871008 G A FBXO33 Silent p.S256S 0.21 TCGA-XK-AAIW-01 14 45403751 45403751 A G KLHL28 Missense_Mutation p.Y304H 0.26 deleterious(0) possibly_damaging(0.874) TCGA-XK-AAIW-01 14 45523680 45523680 G A FAM179B Missense_Mutation p.R1443Q 0.41 deleterious(0.04) possibly_damaging(0.784) TCGA-XK-AAIW-01 14 45675289 45675289 T - MIS18BP1 Frame_Shift_Del p.K1079Nfs*2 0.36 TCGA-XK-AAIW-01 14 45687566 45687566 T C MIS18BP1 Missense_Mutation p.K921E 0.46 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 14 47120929 47120929 C T RPL10L Missense_Mutation p.R4H 0.29 tolerated(0.07) benign(0.017) TCGA-XK-AAIW-01 14 47343281 47343281 C T MDGA2 Missense_Mutation p.G854R 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 50085776 50085776 C T RPL36AL Missense_Mutation p.G16D 0.35 tolerated(0.05) benign(0.002) TCGA-XK-AAIW-01 14 50088160 50088160 C A MGAT2 Silent p.P58P 0.32 TCGA-XK-AAIW-01 14 50301159 50301159 G A NEMF Missense_Mutation p.P195S 0.21 tolerated(0.34) benign(0.007) TCGA-XK-AAIW-01 14 50585340 50585340 G A SOS2 Missense_Mutation p.H1241Y 0.45 deleterious_low_confidence(0.03) benign(0.091) TCGA-XK-AAIW-01 14 50734519 50734519 C A L2HGDH Missense_Mutation p.R339I 0.36 deleterious(0.02) possibly_damaging(0.555) TCGA-XK-AAIW-01 14 50750647 50750647 G A L2HGDH Silent p.T215T 0.36 TCGA-XK-AAIW-01 14 50796808 50796808 C T CDKL1 Missense_Mutation p.R354H 0.29 tolerated_low_confidence(1) benign(0.002) TCGA-XK-AAIW-01 14 50904244 50904244 G A MAP4K5 Missense_Mutation p.A611V 0.40 tolerated(0.09) benign(0.359) TCGA-XK-AAIW-01 14 51192762 51192762 G A NIN Missense_Mutation p.T2034I 0.49 deleterious(0.04) possibly_damaging(0.75) TCGA-XK-AAIW-01 14 51227074 51227074 G A NIN Missense_Mutation p.R634C 0.43 tolerated(0.23) possibly_damaging(0.761) TCGA-XK-AAIW-01 14 51239164 51239164 C T NIN Missense_Mutation p.R279H 0.55 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 14 51372228 51372228 G A PYGL Missense_Mutation p.S809L 0.39 tolerated(0.08) possibly_damaging(0.903) TCGA-XK-AAIW-01 14 51492006 51492006 G A TRIM9 Missense_Mutation p.R299C 0.36 deleterious(0.01) possibly_damaging(0.676) TCGA-XK-AAIW-01 14 52186847 52186847 C T FRMD6 Missense_Mutation p.R367W 0.44 tolerated(0.06) possibly_damaging(0.708) TCGA-XK-AAIW-01 14 52433395 52433395 C T GNG2 Missense_Mutation p.A69V 0.33 tolerated(0.53) benign(0.006) TCGA-XK-AAIW-01 14 52509599 52509599 G A NID2 Nonsense_Mutation p.Q494* 0.27 TCGA-XK-AAIW-01 14 52781866 52781866 C T PTGER2 Silent p.Y200Y 0.44 TCGA-XK-AAIW-01 14 52936757 52936757 G A TXNDC16 Missense_Mutation p.T539I 0.24 tolerated(0.1) benign(0.013) TCGA-XK-AAIW-01 14 53100612 53100612 C T GPR137C Nonsense_Mutation p.R354* 0.33 TCGA-XK-AAIW-01 14 53185071 53185071 G A PSMC6 Splice_Site p.X253_splice 0.38 TCGA-XK-AAIW-01 14 53539389 53539389 G A DDHD1 Nonsense_Mutation p.R477* 0.39 TCGA-XK-AAIW-01 14 53560099 53560099 A C DDHD1 Missense_Mutation p.L359R 0.43 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 14 55169324 55169324 G A SAMD4A Intron 0.37 TCGA-XK-AAIW-01 14 55474015 55474015 G A WDHD1 Nonsense_Mutation p.Q195* 0.27 TCGA-XK-AAIW-01 14 55493428 55493428 C T WDHD1 Splice_Site p.X26_splice 0.18 TCGA-XK-AAIW-01 14 55510444 55510444 G A SOCS4 Missense_Mutation p.D229N 0.39 deleterious(0.01) benign(0.201) TCGA-XK-AAIW-01 14 55529374 55529374 C A MAPK1IP1L Silent p.T19T 0.48 TCGA-XK-AAIW-01 14 55817903 55817903 A G FBXO34 Silent p.G265G 0.35 TCGA-XK-AAIW-01 14 55818976 55818976 G A FBXO34 Missense_Mutation p.R623Q 0.25 tolerated(0.1) probably_damaging(0.998) TCGA-XK-AAIW-01 14 56746451 56746451 G A PELI2 Missense_Mutation p.V89M 0.41 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 14 57103318 57103318 T C TMEM260 Splice_Site p.X623_splice 0.42 TCGA-XK-AAIW-01 14 58060841 58060841 A G SLC35F4 Silent p.G71G 0.25 TCGA-XK-AAIW-01 14 58785293 58785293 G A ARID4A Missense_Mutation p.R103H 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 14 58790255 58790255 C T ARID4A Missense_Mutation p.R168C 0.53 deleterious(0) possibly_damaging(0.796) TCGA-XK-AAIW-01 14 58831137 58831137 A - ARID4A Frame_Shift_Del p.T779Qfs*26 0.39 TCGA-XK-AAIW-01 14 58894966 58894966 G A KIAA0586 Missense_Mutation p.C7Y 0.25 tolerated_low_confidence(0.37) benign(0.137) TCGA-XK-AAIW-01 14 58965579 58965579 G A KIAA0586 Missense_Mutation p.G1410R 0.42 deleterious(0.03) benign(0.258) TCGA-XK-AAIW-01 14 59112707 59112707 G A DACT1 Missense_Mutation p.A456T 0.49 tolerated(0.26) benign(0.006) TCGA-XK-AAIW-01 14 59789729 59789729 C T DAAM1 Missense_Mutation p.A187V 0.39 deleterious(0) unknown(0) TCGA-XK-AAIW-01 14 59821889 59821889 G A DAAM1 Missense_Mutation p.R798H 0.49 tolerated(0.47) benign(0.036) TCGA-XK-AAIW-01 14 60069953 60069953 G A RTN1 Missense_Mutation p.P736S 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 60194301 60194301 C T RTN1 Silent p.S367S 0.69 TCGA-XK-AAIW-01 14 60600823 60600823 C T PCNXL4 Missense_Mutation p.R901C 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 60750032 60750032 G C PPM1A Missense_Mutation p.C277S 0.49 tolerated(0.72) benign(0.019) TCGA-XK-AAIW-01 14 60976281 60976281 C T SIX6 Silent p.R55R 0.21 TCGA-XK-AAIW-01 14 62193429 62193429 G A HIF1A Missense_Mutation p.V179M 0.40 tolerated(0.07) benign(0.065) TCGA-XK-AAIW-01 14 62207832 62207832 A G HIF1A Silent p.G697G 0.37 TCGA-XK-AAIW-01 14 63174354 63174354 C T KCNH5 Missense_Mutation p.V947I 0.32 tolerated_low_confidence(0.19) benign(0) TCGA-XK-AAIW-01 14 63747840 63747840 T C RHOJ Missense_Mutation p.L130P 0.17 deleterious(0) probably_damaging(0.979) TCGA-XK-AAIW-01 14 63784459 63784459 G A GPHB5 RNA 0.23 TCGA-XK-AAIW-01 14 64496757 64496758 - A SYNE2 Frame_Shift_Ins p.L2289Ifs*10 0.15 TCGA-XK-AAIW-01 14 64497799 64497799 C T SYNE2 Silent p.S2315S 0.33 TCGA-XK-AAIW-01 14 64637027 64637027 C T SYNE2 Silent p.D5694D 0.33 TCGA-XK-AAIW-01 14 64676265 64676265 C T SYNE2 Missense_Mutation p.T6170M 0.47 probably_damaging(0.95) TCGA-XK-AAIW-01 14 64936178 64936178 A - AKAP5 Frame_Shift_Del p.N357Mfs*7 0.32 TCGA-XK-AAIW-01 14 65008446 65008446 C T HSPA2 Silent p.G293G 0.38 TCGA-XK-AAIW-01 14 65031490 65031490 C T PPP1R36 Silent p.V68V 0.36 TCGA-XK-AAIW-01 14 65197639 65197639 G A PLEKHG3 Missense_Mutation p.R174H 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 65205538 65205538 C T PLEKHG3 Missense_Mutation p.R439C 0.50 tolerated(0.31) benign(0) TCGA-XK-AAIW-01 14 65208801 65208801 G A PLEKHG3 Missense_Mutation p.A800T 0.31 tolerated(0.33) probably_damaging(0.918) TCGA-XK-AAIW-01 14 65406370 65406370 G A GPX2 Missense_Mutation p.P137S 0.44 tolerated(0.12) benign(0.183) TCGA-XK-AAIW-01 14 65417801 65417801 G A RAB15 Silent p.D105D 0.43 TCGA-XK-AAIW-01 14 65550920 65550920 T C MAX Intron 0.33 TCGA-XK-AAIW-01 14 67578599 67578599 C T GPHN Nonsense_Mutation p.R479* 0.40 TCGA-XK-AAIW-01 14 67854066 67854066 C T PLEK2 Missense_Mutation p.A348T 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 14 68054053 68054053 G A PLEKHH1 3'UTR 0.60 TCGA-XK-AAIW-01 14 68234491 68234491 T G ZFYVE26 Missense_Mutation p.E1907A 0.41 deleterious(0.02) benign(0.009) TCGA-XK-AAIW-01 14 68301821 68301821 T C RAD51B Missense_Mutation p.S75P 0.40 tolerated(0.06) benign(0.063) TCGA-XK-AAIW-01 14 68331726 68331726 G A RAD51B Missense_Mutation p.G108S 0.33 tolerated(0.09) probably_damaging(0.943) TCGA-XK-AAIW-01 14 69341600 69341600 C T ACTN1 Silent p.A907A 0.34 TCGA-XK-AAIW-01 14 69345205 69345205 G A ACTN1 Silent p.R799R 0.19 TCGA-XK-AAIW-01 14 69558433 69558433 T C DCAF5 Silent p.S279S 0.37 TCGA-XK-AAIW-01 14 69704572 69704572 C T EXD2 Nonsense_Mutation p.Q525* 0.57 TCGA-XK-AAIW-01 14 69800217 69800217 G A GALNT16 Silent p.T289T 0.33 TCGA-XK-AAIW-01 14 69818927 69818927 G A GALNT16 Intron 0.40 TCGA-XK-AAIW-01 14 70477533 70477533 C T SMOC1 Missense_Mutation p.R243C 0.45 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 14 70990158 70990158 A G ADAM20 Silent p.C489C 0.38 TCGA-XK-AAIW-01 14 70991600 70991600 C A ADAM20 Missense_Mutation p.D9Y 0.48 tolerated_low_confidence(0.19) benign(0.403) TCGA-XK-AAIW-01 14 71197290 71197290 C T MAP3K9 Missense_Mutation p.S1055N 0.31 tolerated(0.21) probably_damaging(0.993) TCGA-XK-AAIW-01 14 71267462 71267462 G A MAP3K9 Nonsense_Mutation p.Q248* 0.46 TCGA-XK-AAIW-01 14 72055848 72055848 A G SIPA1L1 Missense_Mutation p.E420G 0.37 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 14 72138254 72138254 A G SIPA1L1 Missense_Mutation p.T892A 0.39 tolerated(0.66) probably_damaging(0.97) TCGA-XK-AAIW-01 14 72139213 72139213 G A SIPA1L1 Missense_Mutation p.R993H 0.41 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 14 72152319 72152319 C A SIPA1L1 Silent p.I1115I 0.39 TCGA-XK-AAIW-01 14 72171492 72171492 A T SIPA1L1 Missense_Mutation p.E1234V 0.21 tolerated(0.19) benign(0.001) TCGA-XK-AAIW-01 14 73029207 73029207 C T RGS6 3'Flank 0.44 TCGA-XK-AAIW-01 14 73572703 73572703 C T RBM25 Missense_Mutation p.R431W 0.45 unknown(0) TCGA-XK-AAIW-01 14 73726174 73726174 G A PAPLN Missense_Mutation p.G609R 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 73959409 73959409 G A HEATR4 Intron 0.43 TCGA-XK-AAIW-01 14 73985771 73985771 G T HEATR4 Missense_Mutation p.P389H 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 73989701 73989701 G A HEATR4 Silent p.S52S 0.14 TCGA-XK-AAIW-01 14 74179676 74179676 C T PNMA1 Missense_Mutation p.A223T 0.38 tolerated(0.3) benign(0.031) TCGA-XK-AAIW-01 14 74371737 74371737 G T ZNF410 Missense_Mutation p.K305N 0.25 deleterious(0) probably_damaging(0.944) TCGA-XK-AAIW-01 14 74425020 74425020 C A ENTPD5 3'Flank 0.47 TCGA-XK-AAIW-01 14 74534170 74534170 C T ALDH6A1 Missense_Mutation p.A319T 0.37 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 14 74535652 74535652 T C ALDH6A1 Missense_Mutation p.K255E 0.14 deleterious(0) possibly_damaging(0.458) TCGA-XK-AAIW-01 14 74825075 74825075 G A VRTN Missense_Mutation p.R530H 0.43 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 14 74876313 74876313 G A SYNDIG1L Silent p.G45G 0.48 TCGA-XK-AAIW-01 14 75140771 75140771 C T AREL1 Missense_Mutation p.R375H 0.37 deleterious(0) possibly_damaging(0.791) TCGA-XK-AAIW-01 14 75151249 75151249 G A AREL1 Missense_Mutation p.R51W 0.31 deleterious(0.05) probably_damaging(0.993) TCGA-XK-AAIW-01 14 75368922 75368922 C T DLST Silent p.Y417Y 0.41 TCGA-XK-AAIW-01 14 75515153 75515153 C A MLH3 Missense_Mutation p.E402D 0.28 deleterious(0.02) possibly_damaging(0.813) TCGA-XK-AAIW-01 14 75538516 75538516 C T ZC2HC1C Missense_Mutation p.R414W 0.38 deleterious(0.02) benign(0.28) TCGA-XK-AAIW-01 14 75563873 75563873 C T NEK9 Silent p.R701R 0.27 TCGA-XK-AAIW-01 14 76107352 76107352 G A FLVCR2 Silent p.T430T 0.10 TCGA-XK-AAIW-01 14 76200338 76200338 G A TTLL5 Silent p.A377A 0.38 TCGA-XK-AAIW-01 14 76353112 76353112 C T TTLL5 Intron 0.47 TCGA-XK-AAIW-01 14 76425475 76425475 C T TGFB3 3'UTR 0.39 TCGA-XK-AAIW-01 14 76647149 76647149 G A GPATCH2L Missense_Mutation p.D384N 0.39 deleterious(0) possibly_damaging(0.899) TCGA-XK-AAIW-01 14 76928912 76928912 C T ESRRB Missense_Mutation p.A141V 0.40 tolerated(0.17) benign(0.136) TCGA-XK-AAIW-01 14 76948992 76948992 C T ESRRB Missense_Mutation p.A226V 0.21 tolerated(0.08) probably_damaging(0.993) TCGA-XK-AAIW-01 14 77242591 77242591 G A VASH1 Missense_Mutation p.R296H 0.40 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 14 77256966 77256966 C T ANGEL1 Missense_Mutation p.G614R 0.43 tolerated(0.26) benign(0.028) TCGA-XK-AAIW-01 14 77272943 77272943 C T ANGEL1 Missense_Mutation p.R399Q 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 77297581 77297581 C T C14orf166B Silent p.L85L 0.36 TCGA-XK-AAIW-01 14 77572180 77572180 C A CIPC Silent p.G43G 0.31 TCGA-XK-AAIW-01 14 77576214 77576214 G A CIPC Missense_Mutation p.A66T 0.48 tolerated(0.35) benign(0.004) TCGA-XK-AAIW-01 14 77861007 77861007 C A NOXRED1 Missense_Mutation p.Q349H 0.38 tolerated(0.17) possibly_damaging(0.459) TCGA-XK-AAIW-01 14 77889171 77889171 C T NOXRED1 Missense_Mutation p.R21H 0.47 tolerated(0.31) benign(0.023) TCGA-XK-AAIW-01 14 78023436 78023436 G A SPTLC2 Missense_Mutation p.R302W 0.38 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 14 78161199 78161199 G A ALKBH1 Missense_Mutation p.H113Y 0.44 tolerated(0.65) possibly_damaging(0.555) TCGA-XK-AAIW-01 14 79746594 79746594 G A NRXN3 Intron 0.32 TCGA-XK-AAIW-01 14 79933569 79933569 G A NRXN3 Missense_Mutation p.A717T 0.36 tolerated(1) benign(0.024) TCGA-XK-AAIW-01 14 80164184 80164184 C T NRXN3 Silent p.T903T 0.37 TCGA-XK-AAIW-01 14 80677658 80677658 C T DIO2 Missense_Mutation p.R53H 0.50 tolerated(0.07) probably_damaging(0.978) TCGA-XK-AAIW-01 14 81372379 81372379 C T CEP128 Missense_Mutation p.R94H 0.26 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 81744924 81744924 A G STON2 Missense_Mutation p.L244S 0.33 tolerated_low_confidence(0.66) benign(0.004) TCGA-XK-AAIW-01 14 81745071 81745071 G A STON2 Missense_Mutation p.S195L 0.10 tolerated_low_confidence(1) benign(0.012) TCGA-XK-AAIW-01 14 81864721 81864721 C T STON2 Silent p.T2T 0.42 TCGA-XK-AAIW-01 14 88414105 88414105 A G GALC Missense_Mutation p.F486L 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-XK-AAIW-01 14 88895732 88895732 C A SPATA7 Missense_Mutation p.A318D 0.37 deleterious(0.02) benign(0.139) TCGA-XK-AAIW-01 14 88938739 88938739 C T PTPN21 Missense_Mutation p.R907Q 0.28 deleterious(0) possibly_damaging(0.887) TCGA-XK-AAIW-01 14 88945580 88945580 G A PTPN21 Missense_Mutation p.A732V 0.54 tolerated_low_confidence(0.47) benign(0) TCGA-XK-AAIW-01 14 88946188 88946188 C T PTPN21 Silent p.E529E 0.17 TCGA-XK-AAIW-01 14 90767697 90767697 G A NRDE2 Silent p.C477C 0.71 TCGA-XK-AAIW-01 14 90870762 90870762 G A CALM1 Missense_Mutation p.V109I 0.39 tolerated_low_confidence(0.08) benign(0.148) TCGA-XK-AAIW-01 14 91044611 91044611 C T TTC7B Missense_Mutation p.A717T 0.22 tolerated(0.39) possibly_damaging(0.761) TCGA-XK-AAIW-01 14 91700554 91700554 C T GPR68 Missense_Mutation p.A281T 0.56 deleterious(0.02) probably_damaging(0.99) TCGA-XK-AAIW-01 14 91738883 91738883 G A CCDC88C 3'UTR 0.34 TCGA-XK-AAIW-01 14 91770187 91770187 C T CCDC88C Missense_Mutation p.E1165K 0.41 deleterious(0.02) benign(0.31) TCGA-XK-AAIW-01 14 91779572 91779572 G A CCDC88C Missense_Mutation p.S863F 0.40 deleterious(0) possibly_damaging(0.541) TCGA-XK-AAIW-01 14 92470564 92470564 C A TRIP11 Missense_Mutation p.Q1252H 0.50 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 14 92472075 92472075 C T TRIP11 Missense_Mutation p.A749T 0.37 tolerated(0.11) benign(0.126) TCGA-XK-AAIW-01 14 92472518 92472518 C T TRIP11 Missense_Mutation p.S601N 0.34 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 14 92477386 92477386 G A TRIP11 Missense_Mutation p.L420F 0.35 tolerated(0.09) probably_damaging(0.999) TCGA-XK-AAIW-01 14 93182559 93182559 G A LGMN Missense_Mutation p.T109I 0.36 deleterious(0) probably_damaging(0.972) TCGA-XK-AAIW-01 14 93303736 93303736 G A GOLGA5 Missense_Mutation p.R686H 0.39 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 14 93653013 93653013 G A TMEM251 Silent p.T169T 0.39 TCGA-XK-AAIW-01 14 93669993 93669993 G A C14orf142 3'UTR 0.40 TCGA-XK-AAIW-01 14 94088324 94088324 G T UNC79 Missense_Mutation p.R1405M 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XK-AAIW-01 14 94528809 94528809 C T DDX24 Missense_Mutation p.A293T 0.35 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 14 94935863 94935863 T C SERPINA9 Silent p.T123T 0.41 TCGA-XK-AAIW-01 14 95571527 95571527 T C DICER1 Silent p.K1050K 0.38 TCGA-XK-AAIW-01 14 96706996 96706996 C T BDKRB2 Missense_Mutation p.P111S 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 14 96768374 96768374 C T ATG2B Silent p.S1703S 0.26 TCGA-XK-AAIW-01 14 96829259 96829259 G A ATG2B Nonsense_Mutation p.Q19* 0.31 TCGA-XK-AAIW-01 14 96875259 96875259 G A AK7 Missense_Mutation p.R160H 0.59 tolerated(0.07) possibly_damaging(0.507) TCGA-XK-AAIW-01 14 97322895 97322895 C T VRK1 Silent p.D287D 0.29 TCGA-XK-AAIW-01 14 99640796 99640796 G A BCL11B Missense_Mutation p.R793C 0.62 deleterious(0) benign(0.009) TCGA-XK-AAIW-01 14 99641123 99641123 C T BCL11B Missense_Mutation p.A684T 0.28 tolerated(0.57) benign(0.011) TCGA-XK-AAIW-01 14 99865060 99865060 C T SETD3 Missense_Mutation p.A581T 0.35 tolerated_low_confidence(0.27) benign(0) TCGA-XK-AAIW-01 15 100269761 100269761 T G LYSMD4 Missense_Mutation p.D154A 0.47 deleterious(0.03) possibly_damaging(0.815) TCGA-XK-AAIW-01 15 100340319 100340319 G A DNM1P46 RNA 0.37 TCGA-XK-AAIW-01 15 100537606 100537606 G A ADAMTS17 Missense_Mutation p.A927V 0.39 tolerated(0.08) probably_damaging(0.998) TCGA-XK-AAIW-01 15 100589123 100589123 G A ADAMTS17 Missense_Mutation p.P844S 0.25 tolerated(0.29) benign(0.002) TCGA-XK-AAIW-01 15 100802623 100802623 C T ADAMTS17 Silent p.Q269Q 0.38 TCGA-XK-AAIW-01 15 101718648 101718648 G A CHSY1 Silent p.L452L 0.19 TCGA-XK-AAIW-01 15 101906538 101906538 C A PCSK6 Splice_Site p.X573_splice 0.37 TCGA-XK-AAIW-01 15 20662967 20662967 A G HERC2P3 RNA 0.18 TCGA-XK-AAIW-01 15 20666473 20666473 C T HERC2P3 RNA 0.22 TCGA-XK-AAIW-01 15 22382718 22382718 G T OR4N4 Missense_Mutation p.L82F 0.20 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 22935875 22935875 C A CYFIP1 Missense_Mutation p.L271M 0.08 deleterious(0.03) benign(0.405) TCGA-XK-AAIW-01 15 22990104 22990104 C T CYFIP1 Silent p.F908F 0.44 TCGA-XK-AAIW-01 15 22990197 22990197 C T CYFIP1 Silent p.S939S 0.14 TCGA-XK-AAIW-01 15 23330118 23330118 G T HERC2P2 RNA 0.78 TCGA-XK-AAIW-01 15 23889638 23889638 G A MAGEL2 Silent p.N481N 0.40 TCGA-XK-AAIW-01 15 23931681 23931681 G A NDN Silent p.F228F 0.34 TCGA-XK-AAIW-01 15 25326459 25326459 C T SNORD116-15 RNA 0.16 TCGA-XK-AAIW-01 15 25339071 25339071 G T SNORD116-25 5'Flank 0.28 TCGA-XK-AAIW-01 15 25351683 25351684 - A SNORD116-29 RNA 0.22 TCGA-XK-AAIW-01 15 25415789 25415789 C T SNORD115-3 5'Flank 0.37 TCGA-XK-AAIW-01 15 25436481 25436481 T C SNORD115-11 3'Flank 0.43 TCGA-XK-AAIW-01 15 25932910 25932910 G A ATP10A Silent p.H1077H 0.45 TCGA-XK-AAIW-01 15 25959378 25959378 C A ATP10A Missense_Mutation p.R596M 0.38 tolerated(0.12) benign(0.216) TCGA-XK-AAIW-01 15 25981214 25981214 A G ATP10A Silent p.F243F 0.43 TCGA-XK-AAIW-01 15 27188527 27188527 G A GABRA5 Missense_Mutation p.G348D 0.54 tolerated(0.07) benign(0.403) TCGA-XK-AAIW-01 15 28259961 28259961 C T OCA2 Silent p.T335T 0.47 TCGA-XK-AAIW-01 15 28369237 28369237 G A HERC2 Silent p.L4378L 0.42 TCGA-XK-AAIW-01 15 28414705 28414705 A G HERC2 Missense_Mutation p.L3385S 0.41 probably_damaging(0.913) TCGA-XK-AAIW-01 15 28473394 28473394 C T HERC2 Missense_Mutation p.A1812T 0.38 benign(0.386) TCGA-XK-AAIW-01 15 28483299 28483299 C T HERC2 Silent p.R1271R 0.36 TCGA-XK-AAIW-01 15 28501363 28501363 G A HERC2 Missense_Mutation p.A873V 0.39 probably_damaging(0.94) TCGA-XK-AAIW-01 15 28502369 28502369 G A HERC2 Silent p.G785G 0.43 TCGA-XK-AAIW-01 15 28510859 28510859 G A HERC2 Missense_Mutation p.A592V 0.49 benign(0.016) TCGA-XK-AAIW-01 15 28538078 28538078 C A HERC2 Missense_Mutation p.R93M 0.45 benign(0.174) TCGA-XK-AAIW-01 15 29346241 29346241 C T APBA2 Missense_Mutation p.R52W 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.656) TCGA-XK-AAIW-01 15 31294080 31294080 G A TRPM1 Missense_Mutation p.T1625I 0.30 deleterious_low_confidence(0.04) unknown(0) TCGA-XK-AAIW-01 15 31327752 31327752 T C TRPM1 Silent p.R916R 0.32 TCGA-XK-AAIW-01 15 31352794 31352794 C T TRPM1 Missense_Mutation p.V423M 0.29 tolerated(0.08) probably_damaging(0.986) TCGA-XK-AAIW-01 15 31664246 31664246 G A KLF13 Missense_Mutation p.C204Y 0.40 deleterious(0) possibly_damaging(0.712) TCGA-XK-AAIW-01 15 31851385 31851385 G A OTUD7A Missense_Mutation p.R113W 0.27 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 15 33023238 33023238 G A GREM1 Missense_Mutation p.R116H 0.28 deleterious(0.03) possibly_damaging(0.679) TCGA-XK-AAIW-01 15 33359690 33359690 G A FMN1 Silent p.D132D 0.46 TCGA-XK-AAIW-01 15 33927871 33927871 C T RYR3 Nonsense_Mutation p.R1078* 0.27 TCGA-XK-AAIW-01 15 34014941 34014941 C T RYR3 Silent p.S2215S 0.41 TCGA-XK-AAIW-01 15 34023829 34023829 C T RYR3 Missense_Mutation p.S2453F 0.12 benign(0.34) TCGA-XK-AAIW-01 15 34072456 34072456 C T RYR3 Missense_Mutation p.A3061V 0.33 probably_damaging(0.96) TCGA-XK-AAIW-01 15 34078152 34078152 C T RYR3 Silent p.I3186I 0.44 TCGA-XK-AAIW-01 15 34127177 34127177 C T RYR3 Silent p.C3824C 0.38 TCGA-XK-AAIW-01 15 34130097 34130097 C T RYR3 Silent p.D3972D 0.39 TCGA-XK-AAIW-01 15 34130191 34130191 C T RYR3 Missense_Mutation p.H4004Y 0.35 probably_damaging(0.999) TCGA-XK-AAIW-01 15 34147037 34147037 C A RYR3 Missense_Mutation p.A4644D 0.36 probably_damaging(0.99) TCGA-XK-AAIW-01 15 34646000 34646000 G T NUTM1 Missense_Mutation p.Q306H 0.42 deleterious(0.04) benign(0.297) TCGA-XK-AAIW-01 15 34678866 34678866 G A GOLGA8A Missense_Mutation p.S82F 0.36 tolerated(0.05) benign(0.085) TCGA-XK-AAIW-01 15 37188835 37188835 G A MEIS2 Nonsense_Mutation p.R344* 0.47 TCGA-XK-AAIW-01 15 37391664 37391664 C T MEIS2 Missense_Mutation p.A2T 0.40 deleterious_low_confidence(0.02) benign(0.265) TCGA-XK-AAIW-01 15 39883713 39883713 C T THBS1 Silent p.L807L 0.41 TCGA-XK-AAIW-01 15 40290965 40290965 G A EIF2AK4 Missense_Mutation p.D968N 0.16 tolerated(0.12) benign(0.022) TCGA-XK-AAIW-01 15 40328545 40328545 C T SRP14 Missense_Mutation p.A134T 0.43 unknown(0) TCGA-XK-AAIW-01 15 40462754 40462754 G T BUB1B Nonsense_Mutation p.E86* 0.33 TCGA-XK-AAIW-01 15 40468811 40468811 C T BUB1B Missense_Mutation p.A173V 0.34 tolerated(0.54) benign(0.001) TCGA-XK-AAIW-01 15 40512938 40512938 C A BUB1B Missense_Mutation p.P1044H 0.20 deleterious(0) possibly_damaging(0.868) TCGA-XK-AAIW-01 15 40558599 40558599 G T PAK6 Missense_Mutation p.S254I 0.25 deleterious(0.02) benign(0.1) TCGA-XK-AAIW-01 15 40558610 40558610 C T PAK6 Missense_Mutation p.R258C 0.33 tolerated(0.16) possibly_damaging(0.487) TCGA-XK-AAIW-01 15 40590845 40590845 C A PLCB2 Missense_Mutation p.Q305H 0.28 tolerated(0.27) benign(0.007) TCGA-XK-AAIW-01 15 40633154 40633154 T G C15orf52 5'UTR 0.38 TCGA-XK-AAIW-01 15 40685710 40685710 G A KNSTRN Missense_Mutation p.R288Q 0.53 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 15 40750862 40750862 C T BAHD1 Missense_Mutation p.P67S 0.39 tolerated(0.26) probably_damaging(0.993) TCGA-XK-AAIW-01 15 40756193 40756193 C A BAHD1 Missense_Mutation p.S650Y 0.50 deleterious(0.01) benign(0.417) TCGA-XK-AAIW-01 15 41020960 41020960 G A RAD51 Silent p.A195A 0.39 TCGA-XK-AAIW-01 15 41247791 41247791 C T CHAC1 Missense_Mutation p.T205M 0.12 tolerated(0.13) benign(0.017) TCGA-XK-AAIW-01 15 41687179 41687179 G A NDUFAF1 Missense_Mutation p.R213C 0.38 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 15 41819399 41819399 C T RPAP1 Missense_Mutation p.R571H 0.34 tolerated(0.18) probably_damaging(0.996) TCGA-XK-AAIW-01 15 42003160 42003160 G A MGA Silent p.K899K 0.40 TCGA-XK-AAIW-01 15 42041326 42041326 C T MGA Missense_Mutation p.R1841W 0.27 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 42111443 42111443 G T MAPKBP1 Splice_Site p.X770_splice 0.59 TCGA-XK-AAIW-01 15 42134140 42134140 G A PLA2G4B Missense_Mutation p.R436H 0.37 tolerated(0.56) benign(0) TCGA-XK-AAIW-01 15 42138157 42138157 G A PLA2G4B Silent p.L735L 0.44 TCGA-XK-AAIW-01 15 42144411 42144411 C T SPTBN5 Missense_Mutation p.G3518E 0.46 benign(0.013) TCGA-XK-AAIW-01 15 42154447 42154447 C T SPTBN5 Missense_Mutation p.A2477T 0.35 benign(0.046) TCGA-XK-AAIW-01 15 42162698 42162698 G A SPTBN5 Silent p.T1836T 0.38 TCGA-XK-AAIW-01 15 42193242 42193242 C T EHD4 Silent p.T409T 0.42 TCGA-XK-AAIW-01 15 42523405 42523405 A G TMEM87A Silent p.T372T 0.15 TCGA-XK-AAIW-01 15 42632023 42632023 G A GANC Missense_Mutation p.R667Q 0.44 benign(0.377) TCGA-XK-AAIW-01 15 42681141 42681141 C T CAPN3 Silent p.Y216Y 0.14 TCGA-XK-AAIW-01 15 42740533 42740533 G A ZNF106 Nonsense_Mutation p.R935* 0.48 TCGA-XK-AAIW-01 15 42740885 42740885 T C ZNF106 Silent p.V817V 0.36 TCGA-XK-AAIW-01 15 43017403 43017403 A G CDAN1 Missense_Mutation p.L1166P 0.25 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 15 43122251 43122251 C T TTBK2 Missense_Mutation p.R106H 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 43444000 43444000 T C TMEM62 Silent p.F293F 0.42 TCGA-XK-AAIW-01 15 43498760 43498760 G A EPB42 Silent p.N492N 0.32 TCGA-XK-AAIW-01 15 43544999 43544999 G A TGM5 Missense_Mutation p.R274C 0.47 tolerated(0.07) benign(0.027) TCGA-XK-AAIW-01 15 43692277 43692277 G A TUBGCP4 Missense_Mutation p.R485H 0.16 deleterious(0.01) possibly_damaging(0.676) TCGA-XK-AAIW-01 15 43693986 43693986 C T TUBGCP4 Nonsense_Mutation p.R557* 0.43 TCGA-XK-AAIW-01 15 43720314 43720314 C T TP53BP1 Missense_Mutation p.R1243H 0.45 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 43749072 43749072 C A TP53BP1 Missense_Mutation p.Q578H 0.39 tolerated(0.05) possibly_damaging(0.712) TCGA-XK-AAIW-01 15 43766908 43766908 G A TP53BP1 Silent p.I381I 0.39 TCGA-XK-AAIW-01 15 43814556 43814556 G A MAP1A Silent p.T295T 0.43 TCGA-XK-AAIW-01 15 43817299 43817299 C T MAP1A Silent p.L1210L 0.42 TCGA-XK-AAIW-01 15 43818078 43818078 G A MAP1A Silent p.K1469K 0.44 TCGA-XK-AAIW-01 15 43873571 43873571 G A PPIP5K1 Missense_Mutation p.P265S 0.28 tolerated(0.07) possibly_damaging(0.536) TCGA-XK-AAIW-01 15 44063404 44063404 G T PDIA3 Missense_Mutation p.Q502H 0.42 deleterious(0.01) possibly_damaging(0.549) TCGA-XK-AAIW-01 15 44093895 44093895 A G HYPK Intron 0.36 TCGA-XK-AAIW-01 15 44101970 44101970 G A MFAP1 Missense_Mutation p.R344W 0.37 deleterious(0) probably_damaging(0.95) TCGA-XK-AAIW-01 15 44106859 44106859 G A MFAP1 Missense_Mutation p.R153C 0.10 deleterious(0) possibly_damaging(0.689) TCGA-XK-AAIW-01 15 44107161 44107161 C A MFAP1 Missense_Mutation p.E137D 0.30 tolerated(0.46) benign(0.217) TCGA-XK-AAIW-01 15 44149354 44149354 G A WDR76 Missense_Mutation p.G468R 0.33 deleterious(0) probably_damaging(0.963) TCGA-XK-AAIW-01 15 45391660 45391660 C T DUOX2 Missense_Mutation p.A1146T 0.46 tolerated(0.12) benign(0.118) TCGA-XK-AAIW-01 15 45400384 45400384 G T DUOX2 Missense_Mutation p.L479I 0.26 tolerated(0.52) benign(0.442) TCGA-XK-AAIW-01 15 45404113 45404113 G A DUOX2 Silent p.P122P 0.35 TCGA-XK-AAIW-01 15 45427302 45427302 G A DUOX1 Missense_Mutation p.G103D 0.46 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 45427310 45427310 G A DUOX1 Missense_Mutation p.V106M 0.31 deleterious(0) possibly_damaging(0.798) TCGA-XK-AAIW-01 15 45455823 45455823 G A DUOX1 Missense_Mutation p.V1448M 0.45 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 15 45706807 45706807 T C SPATA5L1 Silent p.V491V 0.41 TCGA-XK-AAIW-01 15 48435011 48435011 G A MYEF2 3'UTR 0.31 TCGA-XK-AAIW-01 15 48829912 48829912 G A FBN1 Missense_Mutation p.A211V 0.36 probably_damaging(0.998) TCGA-XK-AAIW-01 15 50546791 50546791 G A HDC Missense_Mutation p.T171M 0.29 tolerated(0.09) benign(0.025) TCGA-XK-AAIW-01 15 50902042 50902042 G A TRPM7 Silent p.S799S 0.33 TCGA-XK-AAIW-01 15 51039785 51039785 G A SPPL2A Missense_Mutation p.S164L 0.44 tolerated(0.31) benign(0.005) TCGA-XK-AAIW-01 15 51289742 51289742 G A AP4E1 Missense_Mutation p.E856K 0.47 deleterious_low_confidence(0.03) benign(0.066) TCGA-XK-AAIW-01 15 51696718 51696718 G A GLDN Missense_Mutation p.A475T 0.36 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 15 51795013 51795013 C T DMXL2 Silent p.T994T 0.27 TCGA-XK-AAIW-01 15 52186107 52186107 G A TMOD3 Missense_Mutation p.A198T 0.37 deleterious(0.03) benign(0.001) TCGA-XK-AAIW-01 15 52632448 52632448 G A MYO5A Missense_Mutation p.A1395V 0.12 tolerated(0.06) probably_damaging(0.989) TCGA-XK-AAIW-01 15 52664539 52664539 C T MYO5A Missense_Mutation p.V867I 0.17 tolerated(0.35) benign(0.004) TCGA-XK-AAIW-01 15 53081569 53081569 G A ONECUT1 Silent p.D171D 0.09 TCGA-XK-AAIW-01 15 53908404 53908404 C A WDR72 Missense_Mutation p.V667F 0.42 deleterious(0) possibly_damaging(0.846) TCGA-XK-AAIW-01 15 53998136 53998136 C T WDR72 Missense_Mutation p.G364S 0.38 deleterious(0.04) probably_damaging(1) TCGA-XK-AAIW-01 15 53998224 53998224 C T WDR72 Silent p.E334E 0.19 TCGA-XK-AAIW-01 15 54305717 54305717 C T UNC13C Missense_Mutation p.S206F 0.37 deleterious_low_confidence(0) benign(0.165) TCGA-XK-AAIW-01 15 54542540 54542540 G T UNC13C Missense_Mutation p.G1116W 0.30 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-XK-AAIW-01 15 54786925 54786925 T C UNC13C Missense_Mutation p.Y1685H 0.43 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XK-AAIW-01 15 55669190 55669190 G A CCPG1 Silent p.G137G 0.44 TCGA-XK-AAIW-01 15 55727180 55727180 G A DYX1C1 Missense_Mutation p.P324S 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 55838292 55838292 C T PYGO1 Missense_Mutation p.A397T 0.19 tolerated(0.09) possibly_damaging(0.757) TCGA-XK-AAIW-01 15 55930778 55930778 G A PRTG Silent p.S807S 0.40 TCGA-XK-AAIW-01 15 55930826 55930826 G A PRTG Silent p.Y791Y 0.27 TCGA-XK-AAIW-01 15 55970053 55970053 C T PRTG Silent p.R441R 0.44 TCGA-XK-AAIW-01 15 56388088 56388088 G A RFX7 Missense_Mutation p.T613M 0.33 deleterious_low_confidence(0) benign(0.012) TCGA-XK-AAIW-01 15 57730747 57730747 A G CGNL1 Missense_Mutation p.N184D 0.49 tolerated(0.5) benign(0.001) TCGA-XK-AAIW-01 15 57730821 57730821 G A CGNL1 Silent p.P208P 0.32 TCGA-XK-AAIW-01 15 57809088 57809088 C T CGNL1 Silent p.S838S 0.45 TCGA-XK-AAIW-01 15 58287286 58287286 T C ALDH1A2 Missense_Mutation p.Q182R 0.40 deleterious(0.01) possibly_damaging(0.773) TCGA-XK-AAIW-01 15 58430862 58430862 C T AQP9 Missense_Mutation p.T33M 0.34 deleterious(0.01) probably_damaging(0.961) TCGA-XK-AAIW-01 15 58830636 58830636 C T LIPC Nonsense_Mutation p.R65* 0.41 TCGA-XK-AAIW-01 15 58830668 58830668 C T LIPC Silent p.C75C 0.10 TCGA-XK-AAIW-01 15 58834094 58834094 C T LIPC Silent p.D128D 0.27 TCGA-XK-AAIW-01 15 59146739 59146739 G A FAM63B Missense_Mutation p.R599H 0.39 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 15 59191688 59191688 C T SLTM Silent p.G346G 0.35 TCGA-XK-AAIW-01 15 59209144 59209144 G A SLTM Missense_Mutation p.A102V 0.28 tolerated(0.18) unknown(0) TCGA-XK-AAIW-01 15 59808970 59808970 G T FAM81A Missense_Mutation p.G305W 0.36 deleterious(0) possibly_damaging(0.907) TCGA-XK-AAIW-01 15 59910606 59910606 T C GCNT3 Missense_Mutation p.Y57H 0.16 deleterious(0.04) probably_damaging(0.994) TCGA-XK-AAIW-01 15 60297912 60297912 C T FOXB1 Silent p.H250H 0.14 TCGA-XK-AAIW-01 15 60740235 60740235 G A NARG2 Silent p.L743L 0.28 TCGA-XK-AAIW-01 15 60789592 60789592 T - RORA 3'UTR 0.35 TCGA-XK-AAIW-01 15 60789757 60789757 G A RORA Missense_Mutation p.A523V 0.17 tolerated(0.55) benign(0.01) TCGA-XK-AAIW-01 15 62994217 62994217 G A TLN2 Missense_Mutation p.A575T 0.19 deleterious(0.04) possibly_damaging(0.816) TCGA-XK-AAIW-01 15 63125774 63125774 C T TLN2 Silent p.S2358S 0.43 TCGA-XK-AAIW-01 15 63363436 63363436 C T TPM1 3'UTR 0.16 TCGA-XK-AAIW-01 15 63421885 63421885 G A LACTB Intron 0.40 TCGA-XK-AAIW-01 15 63904748 63904748 G A HERC1 Missense_Mutation p.A4701V 0.33 probably_damaging(0.998) TCGA-XK-AAIW-01 15 63970404 63970405 - T HERC1 Frame_Shift_Ins p.M2237Nfs*9 0.33 TCGA-XK-AAIW-01 15 63984647 63984647 T C HERC1 Silent p.E1931E 0.32 TCGA-XK-AAIW-01 15 64005614 64005614 T C HERC1 Silent p.R1467R 0.34 TCGA-XK-AAIW-01 15 64962553 64962553 G A ZNF609 Missense_Mutation p.V328M 0.53 deleterious(0) possibly_damaging(0.823) TCGA-XK-AAIW-01 15 64970399 64970399 C T ZNF609 Missense_Mutation p.R1163W 0.26 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 15 65041343 65041343 G A RBPMS2 Missense_Mutation p.R92C 0.15 deleterious(0.02) benign(0.117) TCGA-XK-AAIW-01 15 65242086 65242086 G A ANKDD1A Missense_Mutation p.G459D 0.42 deleterious(0) probably_damaging(0.955) TCGA-XK-AAIW-01 15 65261632 65261632 T C SPG21 Missense_Mutation p.E210G 0.21 tolerated(0.68) possibly_damaging(0.831) TCGA-XK-AAIW-01 15 65370349 65370349 G A KBTBD13 Missense_Mutation p.R399H 0.24 tolerated(0.11) probably_damaging(0.973) TCGA-XK-AAIW-01 15 65489526 65489526 C T CILP Missense_Mutation p.C1033Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 15 65621391 65621391 C T IGDCC3 Silent p.A767A 0.47 TCGA-XK-AAIW-01 15 65623855 65623855 G A IGDCC3 Missense_Mutation p.R431W 0.14 deleterious(0) possibly_damaging(0.846) TCGA-XK-AAIW-01 15 65759487 65759487 G A DPP8 Silent p.Y553Y 0.12 TCGA-XK-AAIW-01 15 65793039 65793039 C T DPP8 Missense_Mutation p.A167T 0.39 tolerated(1) benign(0.113) TCGA-XK-AAIW-01 15 65957793 65957793 C T DENND4A Missense_Mutation p.R1749H 0.38 tolerated(0.56) benign(0.023) TCGA-XK-AAIW-01 15 66030196 66030196 C T DENND4A Missense_Mutation p.A297T 0.50 tolerated(0.59) benign(0.001) TCGA-XK-AAIW-01 15 66206195 66206195 C T MEGF11 Missense_Mutation p.V864M 0.39 tolerated(0.2) benign(0.041) TCGA-XK-AAIW-01 15 66813467 66813467 C T ZWILCH Missense_Mutation p.A224V 0.37 tolerated(0.16) benign(0.004) TCGA-XK-AAIW-01 15 67692587 67692587 G A IQCH Missense_Mutation p.V681M 0.19 tolerated(0.13) possibly_damaging(0.6) TCGA-XK-AAIW-01 15 67768131 67768131 C T IQCH Missense_Mutation p.A925V 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 68118589 68118589 C T SKOR1 Silent p.A327A 0.40 TCGA-XK-AAIW-01 15 68486293 68486294 - A CALML4 3'UTR 0.44 TCGA-XK-AAIW-01 15 68510983 68510983 C A CLN6 Missense_Mutation p.G30V 0.31 tolerated_low_confidence(0.21) benign(0.099) TCGA-XK-AAIW-01 15 68583314 68583314 G A FEM1B Missense_Mutation p.V540I 0.46 tolerated(0.08) probably_damaging(0.979) TCGA-XK-AAIW-01 15 68628055 68628055 G A ITGA11 Nonsense_Mutation p.Q469* 0.55 TCGA-XK-AAIW-01 15 69223001 69223001 C A SPESP1 Silent p.P3P 0.37 TCGA-XK-AAIW-01 15 69728547 69728547 G A KIF23 Missense_Mutation p.G448D 0.40 deleterious(0) benign(0.314) TCGA-XK-AAIW-01 15 69747510 69747510 C T RPLP1 Missense_Mutation p.A50V 0.30 tolerated(0.06) benign(0.108) TCGA-XK-AAIW-01 15 69747804 69747804 C T RPLP1 Silent p.S101S 0.18 TCGA-XK-AAIW-01 15 70979979 70979979 G A UACA Missense_Mutation p.R168W 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 15 72300229 72300229 G A MYO9A Missense_Mutation p.R440W 0.29 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 15 72338298 72338298 A G MYO9A Missense_Mutation p.Y203H 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 72338876 72338876 C T MYO9A Missense_Mutation p.R10H 0.38 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 15 72454678 72454678 G A GRAMD2 Missense_Mutation p.R333C 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 72455632 72455632 G A GRAMD2 Missense_Mutation p.R311W 0.22 tolerated(0.05) possibly_damaging(0.485) TCGA-XK-AAIW-01 15 72533877 72533877 G A PARP6 Silent p.G604G 0.35 TCGA-XK-AAIW-01 15 72855772 72855772 G A ARIH1 Missense_Mutation p.C281Y 0.46 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 72968598 72968598 G T HIGD2B Missense_Mutation p.L40I 0.44 tolerated(0.59) benign(0.002) TCGA-XK-AAIW-01 15 73415076 73415076 G A NEO1 Missense_Mutation p.R220H 0.12 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 15 73541550 73541550 G A NEO1 Splice_Site p.X585_splice 0.51 TCGA-XK-AAIW-01 15 73585754 73585754 C T NEO1 Missense_Mutation p.H1256Y 0.21 tolerated(0.19) probably_damaging(0.999) TCGA-XK-AAIW-01 15 73617515 73617515 G A HCN4 Missense_Mutation p.R587W 0.38 deleterious(0) unknown(0) TCGA-XK-AAIW-01 15 74241882 74241882 G A LOXL1 Missense_Mutation p.R562H 0.13 tolerated(0.3) possibly_damaging(0.604) TCGA-XK-AAIW-01 15 74281124 74281124 G A STOML1 Missense_Mutation p.A137V 0.27 deleterious(0.04) benign(0.03) TCGA-XK-AAIW-01 15 74425163 74425163 C T ISLR2 Missense_Mutation p.P23L 0.41 tolerated(1) benign(0.267) TCGA-XK-AAIW-01 15 74427292 74427292 G A ISLR2 Missense_Mutation p.A733T 0.41 tolerated(0.23) benign(0.002) TCGA-XK-AAIW-01 15 74467314 74467314 C T ISLR Missense_Mutation p.R39C 0.38 deleterious(0) possibly_damaging(0.732) TCGA-XK-AAIW-01 15 74631983 74631983 C T CYP11A1 Missense_Mutation p.A368T 0.41 tolerated(0.62) benign(0.001) TCGA-XK-AAIW-01 15 74703066 74703066 C T SEMA7A Missense_Mutation p.G634S 0.48 tolerated(0.8) benign(0.057) TCGA-XK-AAIW-01 15 74883635 74883635 C T ARID3B Missense_Mutation p.A342V 0.45 tolerated(0.43) benign(0.007) TCGA-XK-AAIW-01 15 74914554 74914554 C T CLK3 Nonsense_Mutation p.R303* 0.45 TCGA-XK-AAIW-01 15 75091727 75091727 C T CSK Silent p.C119C 0.15 TCGA-XK-AAIW-01 15 75117858 75117858 G A LMAN1L Missense_Mutation p.G498D 0.28 tolerated(0.09) benign(0.086) TCGA-XK-AAIW-01 15 75134652 75134652 T C ULK3 Missense_Mutation p.H71R 0.49 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 15 75146410 75146410 C T SCAMP2 Silent p.Q59Q 0.43 TCGA-XK-AAIW-01 15 75557535 75557535 G A GOLGA6C Missense_Mutation p.A213T 0.52 tolerated(0.19) probably_damaging(0.982) TCGA-XK-AAIW-01 15 75632054 75632054 G A COMMD4 Missense_Mutation p.A132T 0.41 tolerated(0.54) benign(0.003) TCGA-XK-AAIW-01 15 75646188 75646188 G A NEIL1 Missense_Mutation p.G276D 0.35 deleterious(0.01) probably_damaging(0.975) TCGA-XK-AAIW-01 15 75648457 75648457 G A MAN2C1 Missense_Mutation p.A1014V 0.65 tolerated(0.61) benign(0.048) TCGA-XK-AAIW-01 15 75648507 75648507 G A MAN2C1 Silent p.H997H 0.25 TCGA-XK-AAIW-01 15 75722710 75722710 G A SIN3A Missense_Mutation p.R3W 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 75761284 75761284 C A PTPN9 Missense_Mutation p.E536D 0.22 tolerated(0.06) benign(0.002) TCGA-XK-AAIW-01 15 75949561 75949561 G A SNX33 3'UTR 0.41 TCGA-XK-AAIW-01 15 75975362 75975362 C T CSPG4 Silent p.A1490A 0.33 TCGA-XK-AAIW-01 15 75980589 75980589 C T CSPG4 Silent p.R939R 0.14 TCGA-XK-AAIW-01 15 75981312 75981312 G A CSPG4 Silent p.S698S 0.42 TCGA-XK-AAIW-01 15 75981969 75981969 G A CSPG4 Silent p.G479G 0.45 TCGA-XK-AAIW-01 15 75982327 75982327 A G CSPG4 Missense_Mutation p.V360A 0.42 deleterious(0) possibly_damaging(0.626) TCGA-XK-AAIW-01 15 76430183 76430183 C A C15orf27 Silent p.S58S 0.33 TCGA-XK-AAIW-01 15 77425417 77425417 C T PEAK1 Missense_Mutation p.C1336Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 77450876 77450876 C T PEAK1 Silent p.P1100P 0.48 TCGA-XK-AAIW-01 15 77770726 77770726 C T HMG20A Missense_Mutation p.R261C 0.27 deleterious(0.03) possibly_damaging(0.872) TCGA-XK-AAIW-01 15 77906488 77906488 G A LINGO1 Silent p.G587G 0.49 TCGA-XK-AAIW-01 15 77906603 77906603 G T LINGO1 Missense_Mutation p.P549H 0.37 tolerated(0.07) possibly_damaging(0.497) TCGA-XK-AAIW-01 15 77907625 77907625 G A LINGO1 Silent p.T208T 0.51 TCGA-XK-AAIW-01 15 77907837 77907837 C T LINGO1 Missense_Mutation p.V138I 0.38 tolerated(0.09) probably_damaging(0.988) TCGA-XK-AAIW-01 15 78211298 78211298 G A RP11-114H24.7 Intron 0.32 TCGA-XK-AAIW-01 15 78777262 78777262 G T IREB2 Missense_Mutation p.G525C 0.07 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 78838015 78838015 G A PSMA4 Nonsense_Mutation p.W139* 0.38 TCGA-XK-AAIW-01 15 78888837 78888837 C T CHRNA3 3'UTR 0.46 TCGA-XK-AAIW-01 15 79229690 79229690 C T CTSH Missense_Mutation p.A67T 0.40 tolerated(0.29) benign(0.015) TCGA-XK-AAIW-01 15 79356790 79356790 C T RASGRF1 Missense_Mutation p.E119K 0.35 tolerated(0.08) possibly_damaging(0.856) TCGA-XK-AAIW-01 15 79749053 79749053 C T KIAA1024 Silent p.R188R 0.40 TCGA-XK-AAIW-01 15 79749720 79749720 C T KIAA1024 Missense_Mutation p.R411C 0.36 tolerated(0.1) benign(0) TCGA-XK-AAIW-01 15 79750157 79750157 C T KIAA1024 Silent p.C556C 0.42 TCGA-XK-AAIW-01 15 80889442 80889442 C T ARNT2 3'UTR 0.52 TCGA-XK-AAIW-01 15 81046578 81046578 C T ABHD17C Missense_Mutation p.A286V 0.54 tolerated(0.14) benign(0.255) TCGA-XK-AAIW-01 15 81271611 81271611 A G MESDC2 Silent p.S218S 0.35 TCGA-XK-AAIW-01 15 81295207 81295207 G A MESDC1 Missense_Mutation p.A199T 0.67 tolerated(0.59) benign(0.062) TCGA-XK-AAIW-01 15 81552188 81552188 G A IL16 Missense_Mutation p.A130T 0.35 tolerated(0.11) benign(0.006) TCGA-XK-AAIW-01 15 81585159 81585159 G A IL16 Silent p.R561R 0.50 TCGA-XK-AAIW-01 15 81592597 81592597 C T IL16 Missense_Mutation p.T977M 0.36 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 15 81625594 81625594 G A TMC3 Silent p.H823H 0.43 TCGA-XK-AAIW-01 15 82336500 82336500 G A MEX3B Silent p.D237D 0.13 TCGA-XK-AAIW-01 15 82574587 82574587 G T FAM154B Missense_Mutation p.K127N 0.39 tolerated(0.55) possibly_damaging(0.477) TCGA-XK-AAIW-01 15 82575034 82575034 T - FAM154B Frame_Shift_Del p.P278Lfs*8 0.31 TCGA-XK-AAIW-01 15 83456155 83456155 A T FSD2 5'UTR 0.37 TCGA-XK-AAIW-01 15 84685161 84685161 G A ADAMTSL3 Missense_Mutation p.V1395I 0.36 tolerated(0.24) benign(0.001) TCGA-XK-AAIW-01 15 85164690 85164690 G A ZSCAN2 Missense_Mutation p.E422K 0.15 deleterious(0.05) probably_damaging(0.988) TCGA-XK-AAIW-01 15 85326360 85326360 C T ZNF592 Missense_Mutation p.P152S 0.32 tolerated(0.77) benign(0.004) TCGA-XK-AAIW-01 15 85327309 85327309 G C ZNF592 Missense_Mutation p.R468P 0.43 tolerated(0.29) possibly_damaging(0.601) TCGA-XK-AAIW-01 15 85343171 85343171 C T ZNF592 Missense_Mutation p.T1079M 0.40 tolerated(0.92) possibly_damaging(0.906) TCGA-XK-AAIW-01 15 85345395 85345395 C T ZNF592 Missense_Mutation p.A1192V 0.53 tolerated(0.32) benign(0) TCGA-XK-AAIW-01 15 85345627 85345627 G A ZNF592 3'UTR 0.38 TCGA-XK-AAIW-01 15 85384034 85384034 C T ALPK3 Silent p.C710C 0.41 TCGA-XK-AAIW-01 15 85652350 85652350 G A PDE8A Missense_Mutation p.R368H 0.16 deleterious(0.02) possibly_damaging(0.902) TCGA-XK-AAIW-01 15 85681108 85681108 C T PDE8A Missense_Mutation p.R822W 0.38 deleterious(0) possibly_damaging(0.656) TCGA-XK-AAIW-01 15 86207816 86207816 G A AKAP13 Missense_Mutation p.G1612R 0.21 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 15 86266404 86266404 C T AKAP13 Missense_Mutation p.R2204C 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 86284577 86284577 C T AKAP13 Missense_Mutation p.R2641W 0.33 deleterious(0.05) benign(0.023) TCGA-XK-AAIW-01 15 86284631 86284631 C T AKAP13 Missense_Mutation p.R2659C 0.36 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 15 86312337 86312337 G A KLHL25 Silent p.S235S 0.25 TCGA-XK-AAIW-01 15 86697775 86697775 G A AGBL1 Missense_Mutation p.R80H 0.50 deleterious(0) probably_damaging(0.912) TCGA-XK-AAIW-01 15 89056185 89056185 C T DET1 Silent p.T561T 0.51 TCGA-XK-AAIW-01 15 89155150 89155150 G A MIR7-2 RNA 0.33 TCGA-XK-AAIW-01 15 89172628 89172628 G A AEN Missense_Mutation p.A238T 0.12 tolerated(0.36) probably_damaging(0.996) TCGA-XK-AAIW-01 15 89382166 89382166 G A ACAN Missense_Mutation p.D115N 0.44 deleterious(0) unknown(0) TCGA-XK-AAIW-01 15 89698746 89698746 G A ABHD2 Silent p.S173S 0.51 TCGA-XK-AAIW-01 15 89734361 89734361 G A ABHD2 Missense_Mutation p.C326Y 0.42 deleterious(0) probably_damaging(0.926) TCGA-XK-AAIW-01 15 89744308 89744308 C T ABHD2 3'UTR 0.46 TCGA-XK-AAIW-01 15 89744788 89744788 G T ABHD2 3'UTR 0.37 TCGA-XK-AAIW-01 15 89745045 89745045 C T ABHD2 3'UTR 0.29 TCGA-XK-AAIW-01 15 89801939 89801939 C T FANCI Missense_Mutation p.T30I 0.31 tolerated(0.23) benign(0.014) TCGA-XK-AAIW-01 15 89866119 89866119 A G POLG Silent p.C760C 0.37 TCGA-XK-AAIW-01 15 90019995 90019995 G A RHCG Silent p.V434V 0.11 TCGA-XK-AAIW-01 15 90030153 90030153 C T RHCG Missense_Mutation p.R83H 0.48 deleterious(0) probably_damaging(0.977) TCGA-XK-AAIW-01 15 90137697 90137697 C T TICRR Silent p.G531G 0.52 TCGA-XK-AAIW-01 15 90145182 90145182 C T TICRR Missense_Mutation p.R848C 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 90177027 90177027 C T KIF7 Missense_Mutation p.V828M 0.41 deleterious(0) probably_damaging(0.965) TCGA-XK-AAIW-01 15 90226550 90226550 C A PEX11A 3'UTR 0.44 TCGA-XK-AAIW-01 15 90348601 90348601 C T ANPEP Silent p.T236T 0.36 TCGA-XK-AAIW-01 15 90451581 90451581 C T C15orf38-AP3S2 Missense_Mutation p.G78R 0.41 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-XK-AAIW-01 15 90802028 90802028 G T TTLL13 Missense_Mutation p.K407N 0.28 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 15 91009601 91009601 C T IQGAP1 Silent p.V656V 0.52 TCGA-XK-AAIW-01 15 91025225 91025225 G A IQGAP1 Silent p.A1121A 0.35 TCGA-XK-AAIW-01 15 91424578 91424578 G A FURIN Missense_Mutation p.A619T 0.38 tolerated(0.4) benign(0) TCGA-XK-AAIW-01 15 91455466 91455466 G A MAN2A2 Missense_Mutation p.R768H 0.41 tolerated(0.13) benign(0.015) TCGA-XK-AAIW-01 15 91488122 91488122 G A UNC45A Missense_Mutation p.G343D 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 91505006 91505006 T C RCCD1 3'UTR 0.39 TCGA-XK-AAIW-01 15 91557641 91557641 G A VPS33B Missense_Mutation p.R88C 0.37 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 15 92459273 92459273 C T SLCO3A1 Silent p.D77D 0.34 TCGA-XK-AAIW-01 15 92663751 92663751 C A SLCO3A1 Missense_Mutation p.L356M 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 15 92671655 92671655 C T SLCO3A1 Missense_Mutation p.T483I 0.36 tolerated(0.08) possibly_damaging(0.588) TCGA-XK-AAIW-01 15 93489284 93489284 G A CHD2 Silent p.P405P 0.44 TCGA-XK-AAIW-01 15 93552392 93552392 G A CHD2 Silent p.R1477R 0.29 TCGA-XK-AAIW-01 15 93567736 93567736 G A CHD2 Missense_Mutation p.R1763H 0.26 deleterious_low_confidence(0) possibly_damaging(0.517) TCGA-XK-AAIW-01 15 98511267 98511267 G T ARRDC4 Missense_Mutation p.E182D 0.40 tolerated(0.16) probably_damaging(0.957) TCGA-XK-AAIW-01 15 98512457 98512457 A G ARRDC4 Missense_Mutation p.T244A 0.39 tolerated(0.28) possibly_damaging(0.737) TCGA-XK-AAIW-01 15 98513233 98513233 G A ARRDC4 Missense_Mutation p.D335N 0.36 tolerated(0.74) probably_damaging(0.977) TCGA-XK-AAIW-01 15 98995239 98995239 C T FAM169B Missense_Mutation p.G62D 0.36 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 15 99467887 99467887 C A IGF1R Missense_Mutation p.P919H 0.45 tolerated(0.29) possibly_damaging(0.76) TCGA-XK-AAIW-01 15 99715278 99715278 G A TTC23 Missense_Mutation p.A281V 0.34 deleterious(0.02) benign(0.209) TCGA-XK-AAIW-01 16 10524604 10524604 G A ATF7IP2 Missense_Mutation p.G43R 0.41 tolerated(0.16) possibly_damaging(0.527) TCGA-XK-AAIW-01 16 10769939 10769939 C A TEKT5 Missense_Mutation p.E321D 0.15 tolerated(0.08) benign(0.012) TCGA-XK-AAIW-01 16 10841067 10841067 C T NUBP1 Silent p.G64G 0.38 TCGA-XK-AAIW-01 16 10989172 10989172 C A CIITA Missense_Mutation p.P29H 0.32 deleterious(0.01) probably_damaging(0.927) TCGA-XK-AAIW-01 16 11000826 11000826 C T CIITA Missense_Mutation p.R493C 0.40 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 16 11063092 11063092 G A CLEC16A Missense_Mutation p.A140T 0.38 deleterious(0) possibly_damaging(0.854) TCGA-XK-AAIW-01 16 11118704 11118704 C T CLEC16A Missense_Mutation p.A488V 0.23 deleterious(0) benign(0.386) TCGA-XK-AAIW-01 16 11217764 11217764 C T CLEC16A Missense_Mutation p.R812C 0.61 deleterious(0.04) probably_damaging(0.996) TCGA-XK-AAIW-01 16 1129348 1129348 C T SSTR5 Silent p.S160S 0.57 TCGA-XK-AAIW-01 16 1129430 1129430 G A SSTR5 Missense_Mutation p.A188T 0.44 deleterious(0) benign(0.004) TCGA-XK-AAIW-01 16 11374865 11374865 C T PRM1 Missense_Mutation p.R47Q 0.36 unknown(0) TCGA-XK-AAIW-01 16 113790 113790 G A RHBDF1 Missense_Mutation p.A86V 0.37 deleterious(0) possibly_damaging(0.533) TCGA-XK-AAIW-01 16 1265558 1265558 G A CACNA1H Missense_Mutation p.A1737T 0.22 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 1365672 1365672 C T UBE2I Silent p.G56G 0.34 TCGA-XK-AAIW-01 16 1391167 1391167 C T BAIAP3 Missense_Mutation p.A204V 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 14397837 14397837 C T MIR193B RNA 0.36 TCGA-XK-AAIW-01 16 1478455 1478455 T C C16orf91 Missense_Mutation p.S66G 0.45 deleterious_low_confidence(0) benign(0.294) TCGA-XK-AAIW-01 16 1498404 1498404 C T CLCN7 Silent p.A655A 0.53 TCGA-XK-AAIW-01 16 15690732 15690732 G T KIAA0430 Missense_Mutation p.L1683M 0.15 tolerated(0.22) possibly_damaging(0.495) TCGA-XK-AAIW-01 16 1573865 1573865 G A IFT140 Silent p.G1078G 0.22 TCGA-XK-AAIW-01 16 15771786 15771786 C T NDE1 Silent p.D122D 0.32 TCGA-XK-AAIW-01 16 15820787 15820787 G A MYH11 Missense_Mutation p.A1266V 0.41 benign(0.003) TCGA-XK-AAIW-01 16 15865458 15865458 G A MYH11 Missense_Mutation p.A341V 0.37 benign(0.026) TCGA-XK-AAIW-01 16 1614036 1614036 C T IFT140 Missense_Mutation p.A677T 0.48 tolerated(0.55) benign(0.002) TCGA-XK-AAIW-01 16 16215871 16215871 G A ABCC1 Missense_Mutation p.E1144K 0.24 deleterious(0) possibly_damaging(0.895) TCGA-XK-AAIW-01 16 16259662 16259662 C T ABCC6 Missense_Mutation p.G1042S 0.18 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 16 1630763 1630763 C T IFT140 Nonsense_Mutation p.W507* 0.47 TCGA-XK-AAIW-01 16 1634265 1634265 G A IFT140 Missense_Mutation p.H438Y 0.55 tolerated(0.56) benign(0.009) TCGA-XK-AAIW-01 16 16364042 16364042 G A NOMO3 Splice_Site p.X653_splice 0.21 TCGA-XK-AAIW-01 16 1706079 1706079 G A CRAMP1L Missense_Mutation p.V441M 0.40 tolerated_low_confidence(0.07) benign(0.157) TCGA-XK-AAIW-01 16 1793343 1793343 C T MAPK8IP3 Missense_Mutation p.R204C 0.49 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 16 1825080 1825080 C T EME2 Silent p.P172P 0.23 TCGA-XK-AAIW-01 16 1841078 1841078 C T IGFALS Silent p.T485T 0.25 TCGA-XK-AAIW-01 16 1842413 1842413 A G IGFALS Silent p.S40S 0.54 TCGA-XK-AAIW-01 16 1873023 1873023 C T HAGH Missense_Mutation p.G31E 0.47 deleterious_low_confidence(0.01) benign(0.001) TCGA-XK-AAIW-01 16 19509365 19509365 T C TMC5 3'UTR 0.37 TCGA-XK-AAIW-01 16 19693654 19693654 C T C16orf62 Silent p.C912C 0.42 TCGA-XK-AAIW-01 16 20370619 20370619 T - PDILT 3'UTR 0.35 TCGA-XK-AAIW-01 16 2042693 2042693 C T SYNGR3 Missense_Mutation p.R132C 0.33 tolerated(0.19) possibly_damaging(0.892) TCGA-XK-AAIW-01 16 20471430 20471430 C T ACSM2A Intron 0.19 TCGA-XK-AAIW-01 16 20476858 20476858 G A ACSM2A Missense_Mutation p.S66N 0.17 tolerated(1) benign(0.024) TCGA-XK-AAIW-01 16 2048469 2048469 G A ZNF598 Missense_Mutation p.L827F 0.41 probably_damaging(1) TCGA-XK-AAIW-01 16 2049773 2049773 C T ZNF598 Missense_Mutation p.V593M 0.31 benign(0.055) TCGA-XK-AAIW-01 16 2050146 2050146 C T ZNF598 Silent p.A468A 0.37 TCGA-XK-AAIW-01 16 20787371 20787371 G T ACSM3 Missense_Mutation p.G144W 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 20797543 20797543 C T ACSM3 Intron 0.44 TCGA-XK-AAIW-01 16 20833204 20833204 C T AC004381.6 Missense_Mutation p.T199M 0.40 tolerated(0.05) benign(0.068) TCGA-XK-AAIW-01 16 20835781 20835781 T A AC004381.6 Missense_Mutation p.F213I 0.39 deleterious(0.01) benign(0.157) TCGA-XK-AAIW-01 16 2096314 2096314 G A NTHL1 Missense_Mutation p.R65C 0.35 tolerated(0.14) benign(0.001) TCGA-XK-AAIW-01 16 20975040 20975040 G A DNAH3 Missense_Mutation p.T3389M 0.16 deleterious(0) benign(0.223) TCGA-XK-AAIW-01 16 21008665 21008665 C T DNAH3 Missense_Mutation p.V2181M 0.44 deleterious(0.03) benign(0.289) TCGA-XK-AAIW-01 16 2110816 2110816 T C TSC2 Splice_Site p.X373_splice 0.36 TCGA-XK-AAIW-01 16 21110052 21110052 C A DNAH3 Missense_Mutation p.R802I 0.35 deleterious(0.02) benign(0.013) TCGA-XK-AAIW-01 16 2120463 2120463 C A TSC2 Missense_Mutation p.L575M 0.34 deleterious(0.04) probably_damaging(0.962) TCGA-XK-AAIW-01 16 21210894 21210894 G A ZP2 Nonsense_Mutation p.R642* 0.27 TCGA-XK-AAIW-01 16 21222940 21222940 G A ZP2 5'UTR 0.64 TCGA-XK-AAIW-01 16 21261858 21261858 G A ANKS4B Missense_Mutation p.G324D 0.33 tolerated(0.69) benign(0.001) TCGA-XK-AAIW-01 16 21328282 21328282 G A CRYM-AS1 RNA 0.38 TCGA-XK-AAIW-01 16 2133780 2133780 C T TSC2 Missense_Mutation p.A1323V 0.27 tolerated_low_confidence(0.35) benign(0.001) TCGA-XK-AAIW-01 16 2160656 2160656 G A PKD1 Silent p.D1504D 0.50 TCGA-XK-AAIW-01 16 21666715 21666715 G A METTL9 Missense_Mutation p.V307I 0.39 tolerated(0.15) possibly_damaging(0.468) TCGA-XK-AAIW-01 16 21995749 21995749 C T PDZD9 Missense_Mutation p.D152N 0.44 tolerated(0.33) benign(0.002) TCGA-XK-AAIW-01 16 2223318 2223318 G T TRAF7 Missense_Mutation p.Q310H 0.32 deleterious(0) possibly_damaging(0.825) TCGA-XK-AAIW-01 16 2225572 2225572 C T TRAF7 Silent p.A525A 0.33 TCGA-XK-AAIW-01 16 22268671 22268671 C T EEF2K Missense_Mutation p.T289M 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 2228970 2228970 C T CASKIN1 Missense_Mutation p.A1378T 0.36 unknown(0) TCGA-XK-AAIW-01 16 2257059 2257059 G A MLST8 Missense_Mutation p.R123Q 0.16 deleterious(0) possibly_damaging(0.856) TCGA-XK-AAIW-01 16 2284279 2284279 G A E4F1 Missense_Mutation p.D495N 0.34 deleterious(0) possibly_damaging(0.702) TCGA-XK-AAIW-01 16 2285489 2285489 G T E4F1 Missense_Mutation p.E757D 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 16 2329104 2329104 G A ABCA3 Nonsense_Mutation p.Q1463* 0.33 TCGA-XK-AAIW-01 16 2336723 2336723 G T ABCA3 Missense_Mutation p.L1084M 0.48 tolerated(0.29) benign(0.14) TCGA-XK-AAIW-01 16 23400346 23400346 G A COG7 Silent p.I736I 0.36 TCGA-XK-AAIW-01 16 23491977 23491977 G T GGA2 Missense_Mutation p.P332H 0.53 deleterious(0.02) possibly_damaging(0.717) TCGA-XK-AAIW-01 16 23497419 23497419 G A GGA2 Nonsense_Mutation p.R239* 0.53 TCGA-XK-AAIW-01 16 23641340 23641340 G A PALB2 Missense_Mutation p.A712V 0.36 tolerated(0.25) benign(0.009) TCGA-XK-AAIW-01 16 23700655 23700655 G A PLK1 Missense_Mutation p.R456H 0.54 tolerated(0.05) benign(0.029) TCGA-XK-AAIW-01 16 23700886 23700886 G A PLK1 Silent p.P499P 0.40 TCGA-XK-AAIW-01 16 23702664 23702664 C A ERN2 Missense_Mutation p.R868L 0.60 deleterious(0) possibly_damaging(0.545) TCGA-XK-AAIW-01 16 23707250 23707250 C T ERN2 Silent p.V573V 0.19 TCGA-XK-AAIW-01 16 24808870 24808870 G A TNRC6A Silent p.Q1207Q 0.33 TCGA-XK-AAIW-01 16 24835166 24835166 G A TNRC6A 3'UTR 0.36 TCGA-XK-AAIW-01 16 24953340 24953340 C T ARHGAP17 Silent p.A486A 0.37 TCGA-XK-AAIW-01 16 2498959 2498959 G A CCNF Missense_Mutation p.A400T 0.32 tolerated(0.39) benign(0.027) TCGA-XK-AAIW-01 16 2510927 2510927 G A C16orf59 Missense_Mutation p.A103T 0.29 tolerated(0.45) possibly_damaging(0.461) TCGA-XK-AAIW-01 16 25139801 25139801 C T LCMT1 Missense_Mutation p.A40V 0.46 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 16 2550834 2550834 G A TBC1D24 Missense_Mutation p.D519N 0.43 deleterious(0.01) possibly_damaging(0.625) TCGA-XK-AAIW-01 16 2581028 2581028 C T CEMP1 Missense_Mutation p.C16Y 0.28 deleterious_low_confidence(0) possibly_damaging(0.588) TCGA-XK-AAIW-01 16 27460093 27460093 G A IL21R Missense_Mutation p.R369Q 0.10 tolerated(0.21) benign(0.176) TCGA-XK-AAIW-01 16 27503740 27503740 G A GTF3C1 Missense_Mutation p.R1024C 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 2752452 2752452 G A KCTD5 Silent p.T216T 0.18 TCGA-XK-AAIW-01 16 27539921 27539921 T C GTF3C1 Missense_Mutation p.K324R 0.38 tolerated(0.1) possibly_damaging(0.669) TCGA-XK-AAIW-01 16 2764112 2764112 C T PRSS27 Silent p.T154T 0.36 TCGA-XK-AAIW-01 16 27761416 27761416 G A KIAA0556 Missense_Mutation p.M1045I 0.33 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 16 27761475 27761475 C T KIAA0556 Missense_Mutation p.T1065M 0.47 tolerated(0.19) benign(0.016) TCGA-XK-AAIW-01 16 27784466 27784466 C T KIAA0556 Silent p.Y1415Y 0.15 TCGA-XK-AAIW-01 16 27788316 27788316 C T KIAA0556 Missense_Mutation p.A1506V 0.07 deleterious(0) possibly_damaging(0.796) TCGA-XK-AAIW-01 16 28115914 28115914 C T XPO6 Missense_Mutation p.A967T 0.47 tolerated(0.31) benign(0.058) TCGA-XK-AAIW-01 16 28117489 28117489 G A XPO6 Missense_Mutation p.R887W 0.35 deleterious(0) possibly_damaging(0.708) TCGA-XK-AAIW-01 16 28498783 28498783 G T CLN3 Missense_Mutation p.L152M 0.45 deleterious(0.04) probably_damaging(0.996) TCGA-XK-AAIW-01 16 2870994 2870994 G A PRSS21 Missense_Mutation p.A197T 0.36 tolerated(0.78) benign(0.153) TCGA-XK-AAIW-01 16 28854382 28854382 G A TUFM Nonsense_Mutation p.R428* 0.45 TCGA-XK-AAIW-01 16 28913388 28913388 G A ATP2A1 Missense_Mutation p.V769M 0.31 deleterious(0.01) possibly_damaging(0.664) TCGA-XK-AAIW-01 16 28975111 28975111 C T NFATC2IP Missense_Mutation p.T396I 0.29 deleterious(0.02) probably_damaging(0.989) TCGA-XK-AAIW-01 16 29113395 29113395 C A RRN3P2 RNA 0.47 TCGA-XK-AAIW-01 16 29376039 29376039 G A SNX29P2 RNA 0.21 TCGA-XK-AAIW-01 16 29675489 29675489 G A SPN Missense_Mutation p.S147N 0.50 tolerated(0.3) benign(0.023) TCGA-XK-AAIW-01 16 29841818 29841818 G A MVP Intron 0.07 TCGA-XK-AAIW-01 16 29842219 29842219 G A MVP Missense_Mutation p.R49H 0.34 tolerated(0.12) benign(0.003) TCGA-XK-AAIW-01 16 29848061 29848061 G A MVP Missense_Mutation p.A231T 0.29 deleterious(0) benign(0.346) TCGA-XK-AAIW-01 16 29853338 29853338 G A MVP Silent p.A513A 0.47 TCGA-XK-AAIW-01 16 29996844 29996844 C T TAOK2 Missense_Mutation p.A578V 0.40 tolerated(0.06) benign(0.113) TCGA-XK-AAIW-01 16 30037072 30037072 A G FAM57B Missense_Mutation p.V172A 0.45 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 30116256 30116256 C T GDPD3 Silent p.T298T 0.33 TCGA-XK-AAIW-01 16 3021331 3021331 C T PAQR4 Missense_Mutation p.R114W 0.36 tolerated(0.06) probably_damaging(0.935) TCGA-XK-AAIW-01 16 30387747 30387747 G A MYLPF Missense_Mutation p.R59H 0.18 deleterious(0.01) possibly_damaging(0.664) TCGA-XK-AAIW-01 16 30409209 30409209 C T ZNF48 Missense_Mutation p.T213I 0.42 tolerated(0.36) probably_damaging(0.946) TCGA-XK-AAIW-01 16 30506132 30506132 G A ITGAL Silent p.E488E 0.36 TCGA-XK-AAIW-01 16 30536159 30536159 G A ZNF768 Silent p.C434C 0.47 TCGA-XK-AAIW-01 16 30537189 30537189 G T ZNF768 Missense_Mutation p.P91H 0.38 deleterious_low_confidence(0) benign(0.417) TCGA-XK-AAIW-01 16 30581460 30581460 C T ZNF688 Missense_Mutation p.R203H 0.53 deleterious(0.04) probably_damaging(0.975) TCGA-XK-AAIW-01 16 30583425 30583425 G A ZNF688 5'UTR 0.49 TCGA-XK-AAIW-01 16 30594700 30594700 C T ZNF785 Silent p.A133A 0.39 TCGA-XK-AAIW-01 16 30724641 30724641 C T SRCAP Missense_Mutation p.A748V 0.36 unknown(0) TCGA-XK-AAIW-01 16 30747622 30747622 T C SRCAP Silent p.F2277F 0.40 TCGA-XK-AAIW-01 16 30748453 30748453 G A SRCAP Silent p.P2364P 0.39 TCGA-XK-AAIW-01 16 30768239 30768239 C T PHKG2 Missense_Mutation p.H348Y 0.36 deleterious(0) benign(0) TCGA-XK-AAIW-01 16 30794560 30794560 C T ZNF629 Silent p.K363K 0.30 TCGA-XK-AAIW-01 16 30958065 30958065 C T FBXL19 Missense_Mutation p.R568C 0.25 deleterious(0.01) possibly_damaging(0.585) TCGA-XK-AAIW-01 16 30964860 30964860 G A ORAI3 Missense_Mutation p.G195R 0.41 tolerated_low_confidence(0.13) benign(0.09) TCGA-XK-AAIW-01 16 30992103 30992103 G T SETD1A Missense_Mutation p.R1542L 0.41 unknown(0) TCGA-XK-AAIW-01 16 3100101 3100101 C T MMP25 Silent p.Y108Y 0.31 TCGA-XK-AAIW-01 16 31072558 31072558 C T ZNF668 Missense_Mutation p.R587H 0.17 deleterious(0.01) possibly_damaging(0.742) TCGA-XK-AAIW-01 16 31075680 31075680 G A ZNF668 Missense_Mutation p.A57V 0.17 tolerated(0.56) benign(0.014) TCGA-XK-AAIW-01 16 31087602 31087602 G A ZNF646 5'UTR 0.35 TCGA-XK-AAIW-01 16 31092695 31092695 C T ZNF646 Missense_Mutation p.R1684C 0.47 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 16 31122645 31122645 C T BCKDK Silent p.D290D 0.44 TCGA-XK-AAIW-01 16 31123313 31123313 C T BCKDK Silent p.D353D 0.12 TCGA-XK-AAIW-01 16 31157220 31157220 C T PRSS36 Missense_Mutation p.A204T 0.33 tolerated(0.4) benign(0.012) TCGA-XK-AAIW-01 16 31228335 31228335 G A PYDC1 Silent p.R5R 0.35 TCGA-XK-AAIW-01 16 31372436 31372436 C T ITGAX Missense_Mutation p.A305V 0.33 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 16 3140145 3140145 G A ZSCAN10 Silent p.P375P 0.38 TCGA-XK-AAIW-01 16 31422650 31422650 G A ITGAD Missense_Mutation p.A507T 0.41 tolerated(0.18) benign(0.004) TCGA-XK-AAIW-01 16 31434701 31434701 C T ITGAD Missense_Mutation p.A963V 0.35 deleterious(0.01) benign(0.312) TCGA-XK-AAIW-01 16 31475817 31475817 C T ARMC5 Silent p.P491P 0.36 TCGA-XK-AAIW-01 16 31497156 31497156 G A SLC5A2 Missense_Mutation p.R137H 0.40 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 31500022 31500022 G A SLC5A2 Silent p.T403T 0.62 TCGA-XK-AAIW-01 16 3165366 3165366 G A ZNF205 Missense_Mutation p.R23H 0.40 tolerated_low_confidence(1) benign(0) TCGA-XK-AAIW-01 16 3165484 3165484 G A ZNF205 Silent p.S62S 0.22 TCGA-XK-AAIW-01 16 32063561 32063561 G T AC142381.1 Missense_Mutation p.S84I 0.24 benign(0.157) TCGA-XK-AAIW-01 16 32890652 32890652 G A SLC6A10P RNA 0.45 TCGA-XK-AAIW-01 16 3306561 3306561 C T MEFV Silent p.L9L 0.60 TCGA-XK-AAIW-01 16 354308 354308 C T AXIN1 Missense_Mutation p.R417H 0.58 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 16 3611718 3611718 C T NLRC3 Missense_Mutation p.R714H 0.25 tolerated(0.72) benign(0.009) TCGA-XK-AAIW-01 16 3613607 3613607 G A NLRC3 Missense_Mutation p.T491M 0.33 deleterious(0.03) benign(0.029) TCGA-XK-AAIW-01 16 3614738 3614738 C T NLRC3 Missense_Mutation p.R114H 0.45 tolerated(0.55) benign(0.002) TCGA-XK-AAIW-01 16 364544 364544 C T AXIN1 Missense_Mutation p.V340M 0.44 deleterious(0.01) possibly_damaging(0.848) TCGA-XK-AAIW-01 16 3656526 3656526 G A SLX4 Missense_Mutation p.R237W 0.13 deleterious(0.03) benign(0.015) TCGA-XK-AAIW-01 16 3707287 3707287 C T DNASE1 Silent p.L217L 0.56 TCGA-XK-AAIW-01 16 3707982 3707982 G A DNASE1 3'UTR 0.23 TCGA-XK-AAIW-01 16 3712941 3712941 G A TRAP1 Missense_Mutation p.T579M 0.52 tolerated(0.16) benign(0.104) TCGA-XK-AAIW-01 16 3729744 3729744 C T TRAP1 Silent p.G173G 0.37 TCGA-XK-AAIW-01 16 3736032 3736032 G A TRAP1 Nonsense_Mutation p.Q146* 0.38 TCGA-XK-AAIW-01 16 3779041 3779041 G A CREBBP Missense_Mutation p.P2003S 0.50 unknown(0) TCGA-XK-AAIW-01 16 3779687 3779687 G A CREBBP Silent p.N1787N 0.41 TCGA-XK-AAIW-01 16 3807828 3807828 T C CREBBP Silent p.G1197G 0.41 TCGA-XK-AAIW-01 16 3832871 3832871 C A CREBBP Missense_Mutation p.G463W 0.32 probably_damaging(0.999) TCGA-XK-AAIW-01 16 4016805 4016805 G A ADCY9 Silent p.D1011D 0.37 TCGA-XK-AAIW-01 16 4027606 4027606 G A ADCY9 Missense_Mutation p.A902V 0.25 tolerated(1) benign(0) TCGA-XK-AAIW-01 16 422141 422141 G A TMEM8A Missense_Mutation p.T721I 0.46 tolerated(0.18) probably_damaging(0.969) TCGA-XK-AAIW-01 16 422215 422215 C T TMEM8A Silent p.L696L 0.15 TCGA-XK-AAIW-01 16 425225 425225 G A TMEM8A Silent p.S449S 0.48 TCGA-XK-AAIW-01 16 4407211 4407211 C T CORO7 Silent p.A881A 0.28 TCGA-XK-AAIW-01 16 4410482 4410482 C T CORO7 Missense_Mutation p.R662Q 0.36 deleterious(0) benign(0.119) TCGA-XK-AAIW-01 16 4411454 4411454 C T CORO7 Missense_Mutation p.R532H 0.48 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 4414863 4414863 C T CORO7 Silent p.A319A 0.29 TCGA-XK-AAIW-01 16 450367 450367 A G NME4 3'UTR 0.19 TCGA-XK-AAIW-01 16 457453 457453 G A DECR2 Missense_Mutation p.G77D 0.32 deleterious(0) probably_damaging(0.956) TCGA-XK-AAIW-01 16 4659782 4659782 G A UBALD1 Missense_Mutation p.S129L 0.45 tolerated_low_confidence(0.07) unknown(0) TCGA-XK-AAIW-01 16 46771921 46771921 C T MYLK3 Missense_Mutation p.A235T 0.42 tolerated(0.6) benign(0.079) TCGA-XK-AAIW-01 16 46990864 46990864 A G DNAJA2 3'UTR 0.21 TCGA-XK-AAIW-01 16 4743810 4743810 G A NUDT16L1 Missense_Mutation p.C28Y 0.62 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 16 48121986 48121986 C T ABCC12 Silent p.S1162S 0.34 TCGA-XK-AAIW-01 16 48149394 48149394 C T ABCC12 Missense_Mutation p.V641I 0.49 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 16 48173142 48173142 C T ABCC12 Missense_Mutation p.A255T 0.45 tolerated(0.31) benign(0.041) TCGA-XK-AAIW-01 16 48247384 48247384 C T ABCC11 Silent p.T442T 0.30 TCGA-XK-AAIW-01 16 48250197 48250197 G A ABCC11 Missense_Mutation p.A260V 0.50 tolerated(1) benign(0.009) TCGA-XK-AAIW-01 16 48264351 48264351 G A ABCC11 Missense_Mutation p.P78L 0.45 deleterious(0) benign(0.029) TCGA-XK-AAIW-01 16 4873895 4873895 G A GLYR1 Missense_Mutation p.P184L 0.23 deleterious(0.02) probably_damaging(0.965) TCGA-XK-AAIW-01 16 4882006 4882006 G A GLYR1 Missense_Mutation p.R171W 0.37 deleterious(0.02) benign(0.003) TCGA-XK-AAIW-01 16 50245299 50245299 G A PAPD5 Missense_Mutation p.R220Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 50261831 50261831 G A PAPD5 Missense_Mutation p.V613I 0.37 tolerated_low_confidence(0.2) benign(0.005) TCGA-XK-AAIW-01 16 50707300 50707300 C T SNX20 3'UTR 0.39 TCGA-XK-AAIW-01 16 50707468 50707468 G A SNX20 Missense_Mutation p.A267V 0.42 tolerated(0.92) benign(0.004) TCGA-XK-AAIW-01 16 50733610 50733610 G T NOD2 Missense_Mutation p.K95N 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 50750840 50750840 C T NOD2 Missense_Mutation p.S862F 0.44 tolerated(0.49) benign(0.211) TCGA-XK-AAIW-01 16 5075449 5075449 G A NAGPA 3'UTR 0.42 TCGA-XK-AAIW-01 16 50765772 50765772 G A NOD2 3'UTR 0.42 TCGA-XK-AAIW-01 16 50828294 50828294 G A CYLD Missense_Mutation p.D881N 0.15 tolerated(0.46) possibly_damaging(0.505) TCGA-XK-AAIW-01 16 50830336 50830336 A G CYLD Missense_Mutation p.R930G 0.31 tolerated(0.1) benign(0.013) TCGA-XK-AAIW-01 16 5097896 5097896 C T C16orf89 Missense_Mutation p.R313Q 0.32 tolerated(0.06) benign(0.243) TCGA-XK-AAIW-01 16 51174623 51174623 G A SALL1 Missense_Mutation p.P504S 0.43 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 16 51174772 51174772 C T SALL1 Missense_Mutation p.C454Y 0.21 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 521378 521378 G A RAB11FIP3 Missense_Mutation p.V298I 0.60 tolerated(0.09) benign(0.061) TCGA-XK-AAIW-01 16 52484395 52484395 C T TOX3 Missense_Mutation p.V158I 0.20 tolerated(0.17) probably_damaging(0.934) TCGA-XK-AAIW-01 16 52498096 52498096 G A TOX3 Missense_Mutation p.T53I 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-XK-AAIW-01 16 53337810 53337810 C T CHD9 Silent p.G1964G 0.39 TCGA-XK-AAIW-01 16 53358594 53358594 A G CHD9 Silent p.V2811V 0.42 TCGA-XK-AAIW-01 16 53672318 53672318 A C RPGRIP1L Silent p.T988T 0.42 TCGA-XK-AAIW-01 16 53913791 53913791 C T FTO Silent p.R337R 0.37 TCGA-XK-AAIW-01 16 54319369 54319369 G C IRX3 Missense_Mutation p.L142V 0.44 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 16 55559532 55559532 T C LPCAT2 Missense_Mutation p.L95P 0.16 tolerated(0.27) benign(0) TCGA-XK-AAIW-01 16 55705966 55705966 G A SLC6A2 Missense_Mutation p.D175N 0.41 tolerated(0.59) benign(0.001) TCGA-XK-AAIW-01 16 55727937 55727937 G A SLC6A2 Missense_Mutation p.A312T 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-XK-AAIW-01 16 55729233 55729233 G A SLC6A2 Missense_Mutation p.V356I 0.51 tolerated(0.43) benign(0.001) TCGA-XK-AAIW-01 16 55735848 55735848 T C SLC6A2 Splice_Site p.X610_splice 0.61 TCGA-XK-AAIW-01 16 55862745 55862745 C A CES1 Missense_Mutation p.R65M 0.21 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 55880483 55880483 C A CES5A Silent p.V565V 0.33 TCGA-XK-AAIW-01 16 55903572 55903572 C T CES5A Missense_Mutation p.V197M 0.14 deleterious(0) possibly_damaging(0.791) TCGA-XK-AAIW-01 16 56396190 56396190 T C AMFR 3'UTR 0.33 TCGA-XK-AAIW-01 16 56536302 56536302 T A BBS2 Missense_Mutation p.D336V 0.44 deleterious(0) probably_damaging(0.913) TCGA-XK-AAIW-01 16 56643277 56643277 G A MT2A 3'UTR 0.28 TCGA-XK-AAIW-01 16 56672671 56672671 C T MT1A Silent p.C7C 0.41 TCGA-XK-AAIW-01 16 56996954 56996954 G A CETP Missense_Mutation p.A51T 0.46 deleterious(0) possibly_damaging(0.504) TCGA-XK-AAIW-01 16 57003379 57003379 C T CETP Silent p.N105N 0.38 TCGA-XK-AAIW-01 16 57092918 57092918 C A NLRC5 Missense_Mutation p.L1289M 0.36 tolerated(0.12) possibly_damaging(0.483) TCGA-XK-AAIW-01 16 57265194 57265194 G A RSPRY1 Missense_Mutation p.A498T 0.31 deleterious(0) probably_damaging(0.949) TCGA-XK-AAIW-01 16 57413554 57413554 C A CX3CL1 Missense_Mutation p.H27N 0.34 tolerated(0.32) benign(0.201) TCGA-XK-AAIW-01 16 57719789 57719789 G A GPR97 Silent p.P497P 0.34 TCGA-XK-AAIW-01 16 57741447 57741447 C T CCDC135 Missense_Mutation p.R312C 0.40 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 57760065 57760065 G A CCDC135 Missense_Mutation p.R615H 0.33 tolerated(0.05) benign(0.063) TCGA-XK-AAIW-01 16 57760785 57760785 C T CCDC135 Silent p.Y672Y 0.35 TCGA-XK-AAIW-01 16 57794985 57794985 G A KIFC3 Silent p.G657G 0.42 TCGA-XK-AAIW-01 16 57798061 57798061 C T KIFC3 Silent p.T537T 0.28 TCGA-XK-AAIW-01 16 58030521 58030521 C T ZNF319 Missense_Mutation p.R550H 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-XK-AAIW-01 16 58032066 58032066 G A ZNF319 Missense_Mutation p.T35M 0.49 deleterious(0.03) benign(0.019) TCGA-XK-AAIW-01 16 58149205 58149205 C T C16orf80 Missense_Mutation p.G145S 0.44 tolerated(0.05) possibly_damaging(0.604) TCGA-XK-AAIW-01 16 58197963 58197963 G A CSNK2A2 3'UTR 0.33 TCGA-XK-AAIW-01 16 58218161 58218161 C T CSNK2A2 Intron 0.28 TCGA-XK-AAIW-01 16 613342 613342 G A C16orf11 Silent p.A16A 0.35 TCGA-XK-AAIW-01 16 61687978 61687978 C T CDH8 Missense_Mutation p.R645Q 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-XK-AAIW-01 16 61851610 61851610 G T CDH8 Silent p.S350S 0.40 TCGA-XK-AAIW-01 16 624509 624509 C T PIGQ Silent p.T145T 0.36 TCGA-XK-AAIW-01 16 65032614 65032614 G A CDH11 Missense_Mutation p.T125M 0.44 deleterious(0.01) possibly_damaging(0.801) TCGA-XK-AAIW-01 16 66431994 66431994 C T CDH5 Silent p.N490N 0.31 TCGA-XK-AAIW-01 16 66584027 66584027 C T TK2 5'UTR 0.33 TCGA-XK-AAIW-01 16 66612973 66612973 C T CMTM1 3'UTR 0.50 TCGA-XK-AAIW-01 16 66770078 66770078 G T DYNC1LI2 Missense_Mutation p.P200H 0.43 deleterious(0) possibly_damaging(0.779) TCGA-XK-AAIW-01 16 66956145 66956145 C T RRAD Missense_Mutation p.R254H 0.32 tolerated(0.07) probably_damaging(0.99) TCGA-XK-AAIW-01 16 66974233 66974233 C T CES2 Missense_Mutation p.R242C 0.11 deleterious(0) possibly_damaging(0.642) TCGA-XK-AAIW-01 16 66976084 66976084 C T CES2 Missense_Mutation p.A469V 0.40 tolerated(0.38) benign(0.031) TCGA-XK-AAIW-01 16 67038065 67038065 G A CES4A Missense_Mutation p.V340I 0.42 tolerated(0.31) benign(0.011) TCGA-XK-AAIW-01 16 67183701 67183701 C T B3GNT9 Missense_Mutation p.A230T 0.29 tolerated(1) benign(0.142) TCGA-XK-AAIW-01 16 67195834 67195834 A G FBXL8 Missense_Mutation p.K49R 0.27 tolerated(0.06) benign(0.02) TCGA-XK-AAIW-01 16 67199676 67199676 G A HSF4 Missense_Mutation p.R96H 0.20 deleterious(0.02) benign(0.005) TCGA-XK-AAIW-01 16 67203697 67203697 G A HSF4 3'UTR 0.43 TCGA-XK-AAIW-01 16 67210861 67210861 C T KIAA0895L Silent p.V423V 0.38 TCGA-XK-AAIW-01 16 67221640 67221640 C T EXOC3L1 Silent p.T176T 0.39 TCGA-XK-AAIW-01 16 67261112 67261112 G A TMEM208 5'UTR 0.38 TCGA-XK-AAIW-01 16 67263726 67263726 G A FHOD1 Missense_Mutation p.R1128C 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 67290915 67290915 G A SLC9A5 Missense_Mutation p.A412T 0.37 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 16 67293842 67293842 G A SLC9A5 Missense_Mutation p.R612H 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 67314108 67314108 G A PLEKHG4 Missense_Mutation p.G54E 0.50 tolerated_low_confidence(0.12) benign(0.038) TCGA-XK-AAIW-01 16 67325217 67325217 G A KCTD19 Silent p.L854L 0.39 TCGA-XK-AAIW-01 16 67327470 67327470 C A KCTD19 Missense_Mutation p.S732I 0.26 deleterious_low_confidence(0.03) benign(0.019) TCGA-XK-AAIW-01 16 67429019 67429019 C T ZDHHC1 Silent p.S372S 0.40 TCGA-XK-AAIW-01 16 67472892 67472892 G A ATP6V0D1 Silent p.N266N 0.42 TCGA-XK-AAIW-01 16 67576292 67576292 G T FAM65A Missense_Mutation p.D555Y 0.06 deleterious(0) benign(0.439) TCGA-XK-AAIW-01 16 67577103 67577103 G A FAM65A Missense_Mutation p.R825H 0.45 deleterious(0) possibly_damaging(0.522) TCGA-XK-AAIW-01 16 67579416 67579416 G A FAM65A Missense_Mutation p.V1077M 0.30 tolerated(0.2) possibly_damaging(0.623) TCGA-XK-AAIW-01 16 676092 676092 G A RAB40C Missense_Mutation p.G179D 0.46 deleterious(0.01) possibly_damaging(0.767) TCGA-XK-AAIW-01 16 67681780 67681780 C A RLTPR Silent p.T330T 0.38 TCGA-XK-AAIW-01 16 67683981 67683981 C T RLTPR Silent p.R704R 0.19 TCGA-XK-AAIW-01 16 67688513 67688513 G A RLTPR Missense_Mutation p.R1167H 0.50 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 16 67697373 67697373 G A ENKD1 Missense_Mutation p.T277M 0.35 deleterious(0.03) possibly_damaging(0.808) TCGA-XK-AAIW-01 16 67719373 67719373 G A GFOD2 Silent p.S82S 0.53 TCGA-XK-AAIW-01 16 67864944 67864944 G A CENPT Intron 0.36 TCGA-XK-AAIW-01 16 67899124 67899124 G A NUTF2 Missense_Mutation p.A31T 0.41 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 16 67913871 67913871 C T EDC4 Missense_Mutation p.T647I 0.50 tolerated(0.33) benign(0.004) TCGA-XK-AAIW-01 16 67914539 67914539 G A EDC4 Missense_Mutation p.R726H 0.35 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 16 67942830 67942830 C T PSKH1 Missense_Mutation p.H60Y 0.55 deleterious_low_confidence(0.05) benign(0) TCGA-XK-AAIW-01 16 67943086 67943086 G A PSKH1 Missense_Mutation p.R145H 0.36 tolerated(0.13) benign(0.224) TCGA-XK-AAIW-01 16 67976325 67976325 A G LCAT Missense_Mutation p.F230S 0.37 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 16 67980408 67980408 G A SLC12A4 Silent p.S792S 0.16 TCGA-XK-AAIW-01 16 67986250 67986250 G A SLC12A4 Missense_Mutation p.R254C 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 68024872 68024872 C T DPEP2 Missense_Mutation p.G254D 0.18 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 68112953 68112953 G T DUS2 3'UTR 0.30 TCGA-XK-AAIW-01 16 68200917 68200917 C A NFATC3 Nonsense_Mutation p.C591* 0.36 TCGA-XK-AAIW-01 16 68293284 68293284 G A PLA2G15 Silent p.T321T 0.25 TCGA-XK-AAIW-01 16 68591960 68591960 C T ZFP90 Silent p.V31V 0.38 TCGA-XK-AAIW-01 16 68597347 68597347 C A ZFP90 Silent p.A219A 0.21 TCGA-XK-AAIW-01 16 68597461 68597461 C T ZFP90 Silent p.T257T 0.39 TCGA-XK-AAIW-01 16 68598186 68598186 G A ZFP90 Missense_Mutation p.C499Y 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 68847380 68847380 C T CDH1 Silent p.G434G 0.30 TCGA-XK-AAIW-01 16 69148911 69148911 C A HAS3 Silent p.T468T 0.13 TCGA-XK-AAIW-01 16 69154482 69154482 G A CHTF8 Missense_Mutation p.A71V 0.42 tolerated(0.15) benign(0.29) TCGA-XK-AAIW-01 16 69170682 69170682 C T CIRH1A Silent p.G81G 0.40 TCGA-XK-AAIW-01 16 69369129 69369129 G A COG8 Silent p.D236D 0.21 TCGA-XK-AAIW-01 16 69375508 69375508 C T NIP7 Nonsense_Mutation p.Q166* 0.45 TCGA-XK-AAIW-01 16 69377529 69377529 C A TMED6 Missense_Mutation p.K168N 0.37 deleterious(0.01) benign(0.301) TCGA-XK-AAIW-01 16 69726202 69726202 A G NFAT5 Missense_Mutation p.Q825R 0.17 probably_damaging(0.978) TCGA-XK-AAIW-01 16 69776230 69776230 G A NOB1 3'UTR 0.31 TCGA-XK-AAIW-01 16 69965459 69965459 G A WWP2 Silent p.T523T 0.53 TCGA-XK-AAIW-01 16 69973026 69973026 G A WWP2 Missense_Mutation p.G814S 0.62 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 70029987 70029987 G A PDXDC2P RNA 0.31 TCGA-XK-AAIW-01 16 70162750 70162750 G A PDPR Missense_Mutation p.R142H 0.13 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 16 70190674 70190674 C T PDPR Silent p.I844I 0.17 TCGA-XK-AAIW-01 16 703426 703426 G A WDR90 Missense_Mutation p.R403H 0.34 tolerated(0.13) probably_damaging(0.993) TCGA-XK-AAIW-01 16 70363937 70363937 C T DDX19B Missense_Mutation p.A330V 0.43 tolerated(0.32) benign(0) TCGA-XK-AAIW-01 16 70422350 70422350 G A ST3GAL2 Silent p.N211N 0.43 TCGA-XK-AAIW-01 16 70514974 70514974 C T COG4 Missense_Mutation p.R770H 0.31 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 70796857 70796857 G A VAC14 Missense_Mutation p.T411M 0.41 tolerated(0.17) benign(0.002) TCGA-XK-AAIW-01 16 70815807 70815807 A G VAC14 Missense_Mutation p.V304A 0.31 deleterious(0.05) benign(0.18) TCGA-XK-AAIW-01 16 708965 708965 G A WDR90 Missense_Mutation p.A989T 0.37 deleterious(0.01) benign(0.338) TCGA-XK-AAIW-01 16 70954766 70954766 G A HYDIN Missense_Mutation p.R2505C 0.25 probably_damaging(0.942) TCGA-XK-AAIW-01 16 70989393 70989393 G A HYDIN Silent p.I2067I 0.31 TCGA-XK-AAIW-01 16 71423690 71423690 C T CALB2 Silent p.S246S 0.42 TCGA-XK-AAIW-01 16 71483185 71483185 C T ZNF23 Missense_Mutation p.G248E 0.45 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 71571390 71571390 C A CHST4 Silent p.R270R 0.08 TCGA-XK-AAIW-01 16 71674559 71674559 G T MARVELD3 Nonsense_Mutation p.G288* 0.29 TCGA-XK-AAIW-01 16 71683234 71683234 C T PHLPP2 Silent p.R1177R 0.43 TCGA-XK-AAIW-01 16 71683419 71683419 G A PHLPP2 Missense_Mutation p.R1116W 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 71724517 71724517 G A PHLPP2 Missense_Mutation p.R172C 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 16 72139176 72139176 G A DHX38 Missense_Mutation p.A770T 0.13 tolerated(0.08) benign(0.269) TCGA-XK-AAIW-01 16 72142736 72142736 C A DHX38 Missense_Mutation p.P1098H 0.46 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 16 722291 722291 G T RHOT2 Missense_Mutation p.Q411H 0.40 deleterious(0.02) probably_damaging(0.992) TCGA-XK-AAIW-01 16 723548 723548 C T RHOT2 Missense_Mutation p.A600V 0.37 tolerated(0.12) benign(0.049) TCGA-XK-AAIW-01 16 72828024 72828024 C T ZFHX3 Missense_Mutation p.A2853T 0.45 unknown(0) TCGA-XK-AAIW-01 16 72923683 72923683 T C ZFHX3 Missense_Mutation p.D1132G 0.36 benign(0.22) TCGA-XK-AAIW-01 16 72993051 72993051 C A ZFHX3 Missense_Mutation p.D332Y 0.21 probably_damaging(0.99) TCGA-XK-AAIW-01 16 735360 735360 T C WDR24 Missense_Mutation p.D639G 0.40 deleterious(0.01) possibly_damaging(0.566) TCGA-XK-AAIW-01 16 736980 736980 G A WDR24 Missense_Mutation p.R366C 0.54 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 16 737159 737159 C T WDR24 Missense_Mutation p.R306H 0.26 deleterious(0) probably_damaging(0.977) TCGA-XK-AAIW-01 16 74334038 74334038 C T PSMD7 Missense_Mutation p.R34C 0.39 tolerated(0.07) probably_damaging(0.981) TCGA-XK-AAIW-01 16 74372693 74372693 C A RP11-252A24.2 RNA 0.28 TCGA-XK-AAIW-01 16 74411875 74411875 C T NPIPB15 Missense_Mutation p.R2W 0.27 deleterious_low_confidence(0) unknown(0) TCGA-XK-AAIW-01 16 74443485 74443485 C A CLEC18B Missense_Mutation p.Q431H 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-XK-AAIW-01 16 74444924 74444924 G A CLEC18B Silent p.G331G 0.11 TCGA-XK-AAIW-01 16 74708871 74708871 C T MLKL Silent p.R456R 0.29 TCGA-XK-AAIW-01 16 74708915 74708915 G A MLKL Missense_Mutation p.R442W 0.28 deleterious(0) possibly_damaging(0.892) TCGA-XK-AAIW-01 16 747093 747093 G A FBXL16 Missense_Mutation p.L105F 0.29 tolerated(0.6) benign(0.071) TCGA-XK-AAIW-01 16 74950052 74950052 G A WDR59 Missense_Mutation p.H358Y 0.44 tolerated(1) benign(0.013) TCGA-XK-AAIW-01 16 75263755 75263755 G A BCAR1 Missense_Mutation p.T802I 0.44 tolerated(0.44) probably_damaging(0.998) TCGA-XK-AAIW-01 16 75268802 75268802 G T BCAR1 Missense_Mutation p.D711E 0.38 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 16 75269269 75269269 C T BCAR1 Missense_Mutation p.A556T 0.31 tolerated(0.1) benign(0.08) TCGA-XK-AAIW-01 16 75564025 75564025 G A CHST5 Silent p.P86P 0.30 TCGA-XK-AAIW-01 16 78143685 78143685 C T WWOX Silent p.Y61Y 0.45 TCGA-XK-AAIW-01 16 784318 784318 C T NARFL Missense_Mutation p.G202S 0.43 deleterious(0.01) possibly_damaging(0.586) TCGA-XK-AAIW-01 16 78466627 78466627 C T WWOX Missense_Mutation p.A345V 0.35 tolerated(0.7) benign(0.014) TCGA-XK-AAIW-01 16 784719 784719 C T NARFL Intron 0.37 TCGA-XK-AAIW-01 16 81078146 81078146 C T ATMIN Silent p.T681T 0.32 TCGA-XK-AAIW-01 16 81236213 81236213 C T PKD1L2 Silent p.T345T 0.44 TCGA-XK-AAIW-01 16 81298346 81298346 G A BCMO1 Silent p.K191K 0.11 TCGA-XK-AAIW-01 16 81934265 81934265 G T PLCG2 Missense_Mutation p.Q414H 0.48 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 81960741 81960741 C T PLCG2 Silent p.V824V 0.41 TCGA-XK-AAIW-01 16 82033231 82033231 C T SDR42E1 Missense_Mutation p.V223I 0.24 tolerated(0.08) probably_damaging(0.94) TCGA-XK-AAIW-01 16 836869 836869 C T RPUSD1 Missense_Mutation p.A157T 0.35 tolerated(0.25) benign(0.129) TCGA-XK-AAIW-01 16 84129223 84129223 C T MBTPS1 Nonsense_Mutation p.W203* 0.33 TCGA-XK-AAIW-01 16 84188289 84188289 C T DNAAF1 Missense_Mutation p.R154C 0.40 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 16 84203510 84203510 C T DNAAF1 Missense_Mutation p.A359V 0.29 tolerated(0.39) benign(0.002) TCGA-XK-AAIW-01 16 84203534 84203534 G T DNAAF1 Missense_Mutation p.G367V 0.54 tolerated(0.3) benign(0.003) TCGA-XK-AAIW-01 16 84211392 84211392 G A DNAAF1 Missense_Mutation p.S708N 0.11 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-XK-AAIW-01 16 84270469 84270469 C T KCNG4 Missense_Mutation p.R208H 0.38 tolerated(0.08) possibly_damaging(0.636) TCGA-XK-AAIW-01 16 84270517 84270517 C T KCNG4 Missense_Mutation p.R192H 0.47 tolerated(0.12) benign(0.001) TCGA-XK-AAIW-01 16 84456040 84456040 C T ATP2C2 Silent p.A223A 0.39 TCGA-XK-AAIW-01 16 84492742 84492742 G T ATP2C2 Missense_Mutation p.G722C 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 84940274 84940274 C T CRISPLD2 3'UTR 0.30 TCGA-XK-AAIW-01 16 85015549 85015549 G A ZDHHC7 Silent p.L160L 0.39 TCGA-XK-AAIW-01 16 85135865 85135865 G A FAM92B Silent p.S202S 0.25 TCGA-XK-AAIW-01 16 85712249 85712249 G A GINS2 Missense_Mutation p.A110V 0.40 deleterious(0.05) probably_damaging(1) TCGA-XK-AAIW-01 16 85946826 85946826 G A IRF8 Silent p.A179A 0.19 TCGA-XK-AAIW-01 16 85954892 85954892 C T IRF8 3'UTR 0.39 TCGA-XK-AAIW-01 16 86582121 86582121 T C MTHFSD Silent p.T100T 0.45 TCGA-XK-AAIW-01 16 86585801 86585801 C T MTHFSD Intron 0.38 TCGA-XK-AAIW-01 16 86602198 86602198 G A FOXC2 Silent p.A419A 0.26 TCGA-XK-AAIW-01 16 86612535 86612535 G T FOXL1 Missense_Mutation p.R69M 0.38 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 16 8722915 8722915 C T METTL22 Silent p.D154D 0.32 TCGA-XK-AAIW-01 16 87367550 87367550 C T FBXO31 Missense_Mutation p.V447M 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 16 87446014 87446014 A G ZCCHC14 Silent p.R634R 0.37 TCGA-XK-AAIW-01 16 87451092 87451092 C T ZCCHC14 Missense_Mutation p.V316I 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 16 87677910 87677910 C T JPH3 Silent p.G143G 0.12 TCGA-XK-AAIW-01 16 87677941 87677941 G A JPH3 Missense_Mutation p.A154T 0.45 tolerated(0.27) benign(0.104) TCGA-XK-AAIW-01 16 87743136 87743136 G A KLHDC4 Silent p.T394T 0.15 TCGA-XK-AAIW-01 16 87874675 87874675 G T SLC7A5 Missense_Mutation p.L251I 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 16 8851662 8851662 C T ABAT Missense_Mutation p.A122V 0.45 tolerated(0.45) benign(0.001) TCGA-XK-AAIW-01 16 88666280 88666280 G A ZC3H18 Missense_Mutation p.E338K 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-XK-AAIW-01 16 88747799 88747799 C T SNAI3 Missense_Mutation p.G134R 0.46 tolerated(0.27) benign(0) TCGA-XK-AAIW-01 16 88873803 88873803 G A CDT1 Missense_Mutation p.V464I 0.17 tolerated(0.31) benign(0.001) TCGA-XK-AAIW-01 16 8889655 8889655 C T TMEM186 3'UTR 0.38 TCGA-XK-AAIW-01 16 88902227 88902227 G A GALNS Missense_Mutation p.R222W 0.24 deleterious(0) possibly_damaging(0.773) TCGA-XK-AAIW-01 16 8898637 8898637 C T PMM2 Silent p.Y64Y 0.31 TCGA-XK-AAIW-01 16 89251613 89251613 G A CDH15 Missense_Mutation p.A179T 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-XK-AAIW-01 16 89294899 89294899 G T ZNF778 Nonsense_Mutation p.G707* 0.28 TCGA-XK-AAIW-01 16 89347321 89347321 G A ANKRD11 Missense_Mutation p.P1877S 0.41 benign(0.297) TCGA-XK-AAIW-01 16 89348870 89348870 G A ANKRD11 Silent p.S1360S 0.26 TCGA-XK-AAIW-01 16 89350369 89350369 G A ANKRD11 Missense_Mutation p.P861S 0.40 probably_damaging(0.998) TCGA-XK-AAIW-01 16 89350883 89350883 G A ANKRD11 Silent p.H689H 0.36 TCGA-XK-AAIW-01 16 8941711 8941711 C T PMM2 3'UTR 0.25 TCGA-XK-AAIW-01 16 8953188 8953188 C T CARHSP1 5'UTR 0.58 TCGA-XK-AAIW-01 16 89804415 89804415 C T ZNF276 Missense_Mutation p.R536W 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 16 8988926 8988926 C T USP7 Missense_Mutation p.G1001R 0.39 tolerated(0.46) benign(0.026) TCGA-XK-AAIW-01 16 90072796 90072796 G A DBNDD1 Nonsense_Mutation p.Q162* 0.36 TCGA-XK-AAIW-01 16 9017178 9017178 G A USP7 Nonsense_Mutation p.R93* 0.29 TCGA-XK-AAIW-01 16 9017192 9017192 G T USP7 Missense_Mutation p.P88H 0.27 deleterious(0.01) possibly_damaging(0.906) TCGA-XK-AAIW-01 16 9210616 9210616 G A C16orf72 Silent p.R225R 0.37 TCGA-XK-AAIW-01 16 9858384 9858384 G A GRIN2A Missense_Mutation p.A1006V 0.41 tolerated(0.47) benign(0.001) TCGA-XK-AAIW-01 17 10231371 10231371 T A MYH13 Missense_Mutation p.N835Y 0.40 deleterious(0) benign(0.215) TCGA-XK-AAIW-01 17 10235523 10235523 C T MYH13 Missense_Mutation p.A731T 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 17 1028642 1028642 G - ABR Frame_Shift_Del p.P41Rfs*51 0.32 TCGA-XK-AAIW-01 17 10307651 10307651 T C MYH8 Missense_Mutation p.Q895R 0.14 deleterious(0.02) possibly_damaging(0.756) TCGA-XK-AAIW-01 17 10426684 10426684 C T MYH2 Missense_Mutation p.A1840T 0.37 tolerated(0.19) benign(0.004) TCGA-XK-AAIW-01 17 10426938 10426938 C T MYH2 Missense_Mutation p.A1783T 0.19 deleterious(0.03) benign(0.172) TCGA-XK-AAIW-01 17 10432233 10432233 C T MYH2 Missense_Mutation p.R1173Q 0.32 tolerated(0.13) probably_damaging(1) TCGA-XK-AAIW-01 17 10438444 10438444 C T MYH2 Missense_Mutation p.R709H 0.25 deleterious(0) possibly_damaging(0.862) TCGA-XK-AAIW-01 17 10539137 10539137 C T MYH3 Missense_Mutation p.S1297N 0.37 deleterious(0.01) benign(0.053) TCGA-XK-AAIW-01 17 11554426 11554426 G A DNAH9 Missense_Mutation p.R713K 0.45 benign(0.005) TCGA-XK-AAIW-01 17 11593032 11593032 A T DNAH9 Missense_Mutation p.E1298V 0.36 probably_damaging(0.961) TCGA-XK-AAIW-01 17 11650904 11650904 G A DNAH9 Missense_Mutation p.R2144Q 0.38 probably_damaging(0.994) TCGA-XK-AAIW-01 17 11656223 11656223 C T DNAH9 Silent p.G2228G 0.41 TCGA-XK-AAIW-01 17 11700997 11700997 G C DNAH9 Missense_Mutation p.M2769I 0.31 benign(0.017) TCGA-XK-AAIW-01 17 11886664 11886664 G A ZNF18 Missense_Mutation p.A271V 0.35 tolerated(0.39) benign(0.004) TCGA-XK-AAIW-01 17 11896029 11896029 C T ZNF18 Missense_Mutation p.A40T 0.42 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 17 12013734 12013734 A T MAP2K4 Missense_Mutation p.I226F 0.17 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 12847434 12847434 T G ARHGAP44 Missense_Mutation p.L261R 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 1339932 1339932 C T CRK Silent p.K253K 0.19 TCGA-XK-AAIW-01 17 1340400 1340400 C T CRK Silent p.L97L 0.24 TCGA-XK-AAIW-01 17 1401384 1401384 C T INPP5K Missense_Mutation p.R270H 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 14140020 14140020 C T CDRT15 Missense_Mutation p.R44H 0.30 tolerated_low_confidence(0.17) benign(0.003) TCGA-XK-AAIW-01 17 15234866 15234866 C T TEKT3 Missense_Mutation p.A13T 0.27 tolerated(0.45) benign(0.02) TCGA-XK-AAIW-01 17 15457128 15457128 C T TVP23C-CDRT4 Silent p.S37S 0.36 TCGA-XK-AAIW-01 17 15502026 15502026 C T CDRT1 Intron 0.49 TCGA-XK-AAIW-01 17 1577960 1577960 C T PRPF8 Silent p.T1025T 0.17 TCGA-XK-AAIW-01 17 1584933 1584933 C T PRPF8 Missense_Mutation p.M235I 0.28 deleterious(0.04) benign(0.015) TCGA-XK-AAIW-01 17 1585167 1585167 G A PRPF8 Silent p.D200D 0.32 TCGA-XK-AAIW-01 17 15905279 15905279 C T TTC19 Silent p.D121D 0.36 TCGA-XK-AAIW-01 17 15971251 15971251 C T NCOR1 Silent p.T1566T 0.50 TCGA-XK-AAIW-01 17 1635978 1635978 G A WDR81 Missense_Mutation p.A1448T 0.35 tolerated(0.56) benign(0.002) TCGA-XK-AAIW-01 17 1637344 1637344 C T WDR81 Silent p.T1671T 0.48 TCGA-XK-AAIW-01 17 16455754 16455754 C T ZNF287 Missense_Mutation p.E568K 0.34 tolerated(0.05) benign(0.239) TCGA-XK-AAIW-01 17 16593939 16593939 C T CCDC144A Silent p.D75D 0.37 TCGA-XK-AAIW-01 17 1680697 1680697 C T SERPINF1 Missense_Mutation p.A405V 0.35 deleterious(0) probably_damaging(0.927) TCGA-XK-AAIW-01 17 16842830 16842830 C A TNFRSF13B 3'UTR 0.50 TCGA-XK-AAIW-01 17 16855889 16855889 C A TNFRSF13B Missense_Mutation p.G24C 0.32 deleterious(0) probably_damaging(0.974) TCGA-XK-AAIW-01 17 17076038 17076038 C T MPRIP Missense_Mutation p.R780W 0.24 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 17 17398529 17398529 C T RASD1 Silent p.R252R 0.33 TCGA-XK-AAIW-01 17 17696281 17696281 A G RAI1 Missense_Mutation p.R7G 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 17716711 17716711 C A SREBF1 Missense_Mutation p.R1092M 0.45 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 17 17721180 17721180 C T SREBF1 Missense_Mutation p.V442M 0.45 tolerated(0.16) benign(0.202) TCGA-XK-AAIW-01 17 17927995 17927995 G A ATPAF2 Missense_Mutation p.T149I 0.46 tolerated(0.08) possibly_damaging(0.449) TCGA-XK-AAIW-01 17 18001642 18001642 C T DRG2 Missense_Mutation p.T95I 0.13 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 18059601 18059601 C T MYO15A Missense_Mutation p.A2851V 0.29 unknown(0) TCGA-XK-AAIW-01 17 18137432 18137432 G A LLGL1 Silent p.L219L 0.19 TCGA-XK-AAIW-01 17 18139975 18139975 G A LLGL1 Silent p.P469P 0.52 TCGA-XK-AAIW-01 17 18141473 18141473 G A LLGL1 Missense_Mutation p.R666H 0.24 deleterious(0) possibly_damaging(0.871) TCGA-XK-AAIW-01 17 18141892 18141892 C T LLGL1 Silent p.C725C 0.09 TCGA-XK-AAIW-01 17 18144821 18144821 G T LLGL1 Missense_Mutation p.E853D 0.32 tolerated(0.24) probably_damaging(0.997) TCGA-XK-AAIW-01 17 18148550 18148550 G A FLII Missense_Mutation p.R1238W 0.53 deleterious(0) possibly_damaging(0.713) TCGA-XK-AAIW-01 17 18167674 18167674 C T MIEF2 Missense_Mutation p.P332S 0.15 tolerated(0.05) probably_damaging(0.999) TCGA-XK-AAIW-01 17 18178095 18178095 G A TOP3A 3'UTR 0.09 TCGA-XK-AAIW-01 17 18181522 18181522 C T TOP3A Missense_Mutation p.R765H 0.17 tolerated(0.67) benign(0.001) TCGA-XK-AAIW-01 17 18566140 18566140 G A ZNF286B Nonsense_Mutation p.Q227* 0.55 TCGA-XK-AAIW-01 17 18566500 18566500 G A ZNF286B Missense_Mutation p.H107Y 0.33 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 17 18872438 18872438 C T SLC5A10 Missense_Mutation p.T176M 0.30 tolerated(0.26) benign(0.007) TCGA-XK-AAIW-01 17 18874781 18874781 G A FAM83G Missense_Mutation p.S788F 0.10 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 18882884 18882884 G A FAM83G Missense_Mutation p.R265W 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 18918411 18918411 G A SLC5A10 Silent p.S396S 0.39 TCGA-XK-AAIW-01 17 19186472 19186472 G A EPN2 Missense_Mutation p.V14M 0.47 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 17 19232167 19232167 G A EPN2 Missense_Mutation p.A431T 0.46 tolerated(0.31) benign(0.001) TCGA-XK-AAIW-01 17 19318461 19318461 G A RNF112 Missense_Mutation p.A413T 0.20 tolerated_low_confidence(0.21) benign(0.005) TCGA-XK-AAIW-01 17 19699557 19699557 A T ULK2 Silent p.S616S 0.36 TCGA-XK-AAIW-01 17 19705103 19705103 T C ULK2 Silent p.S476S 0.39 TCGA-XK-AAIW-01 17 19750061 19750061 C T ULK2 Missense_Mutation p.R153H 0.39 tolerated(0.18) benign(0.007) TCGA-XK-AAIW-01 17 19827781 19827781 G A AKAP10 Missense_Mutation p.A564V 0.53 deleterious(0.03) benign(0.359) TCGA-XK-AAIW-01 17 20108894 20108894 G A SPECC1 Missense_Mutation p.R511H 0.40 tolerated(0.49) benign(0.001) TCGA-XK-AAIW-01 17 20407308 20407308 C T RP11-434D2.7 3'Flank 0.31 TCGA-XK-AAIW-01 17 20906275 20906275 C G USP22 3'UTR 0.32 TCGA-XK-AAIW-01 17 20924447 20924447 G A USP22 Nonsense_Mutation p.R133* 0.35 TCGA-XK-AAIW-01 17 21101727 21101727 G A TMEM11 Silent p.D163D 0.53 TCGA-XK-AAIW-01 17 21319298 21319298 T C KCNJ12 Missense_Mutation p.V215A 0.15 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 17 2279998 2279998 G A SGSM2 Intron 0.39 TCGA-XK-AAIW-01 17 2282453 2282453 G A SGSM2 Missense_Mutation p.R1008H 0.40 deleterious(0) possibly_damaging(0.886) TCGA-XK-AAIW-01 17 25932771 25932771 G A KSR1 Silent p.T527T 0.52 TCGA-XK-AAIW-01 17 263856 263856 C T C17orf97 Missense_Mutation p.L408F 0.29 tolerated_low_confidence(0.05) probably_damaging(0.934) TCGA-XK-AAIW-01 17 26687580 26687580 A G TMEM199 Missense_Mutation p.D135G 0.50 deleterious(0.04) benign(0.012) TCGA-XK-AAIW-01 17 26687828 26687828 C T TMEM199 Silent p.C163C 0.35 TCGA-XK-AAIW-01 17 26691899 26691899 G A VTN 3'Flank 0.39 TCGA-XK-AAIW-01 17 26722947 26722947 C T SARM1 Silent p.C615C 0.39 TCGA-XK-AAIW-01 17 26731754 26731754 C T SLC46A1 Missense_Mutation p.A321T 0.19 deleterious(0) benign(0.077) TCGA-XK-AAIW-01 17 26901208 26901208 C T ALDOC Missense_Mutation p.G226R 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 26904749 26904749 C A SPAG5 Nonsense_Mutation p.E1184* 0.43 TCGA-XK-AAIW-01 17 26911191 26911191 G A RP11-192H23.4 Missense_Mutation p.R202W 0.39 tolerated_low_confidence(0.13) unknown(0) TCGA-XK-AAIW-01 17 26912639 26912639 G A SPAG5 Silent p.H591H 0.36 TCGA-XK-AAIW-01 17 26943566 26943566 G A KIAA0100 Intron 0.39 TCGA-XK-AAIW-01 17 26948163 26948163 C A KIAA0100 Missense_Mutation p.Q1695H 0.34 tolerated(0.16) possibly_damaging(0.497) TCGA-XK-AAIW-01 17 26964904 26964904 A G KIAA0100 Missense_Mutation p.V574A 0.32 deleterious(0) possibly_damaging(0.875) TCGA-XK-AAIW-01 17 26970297 26970297 C T KIAA0100 Missense_Mutation p.R94H 0.20 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 27018008 27018008 C T SUPT6H Missense_Mutation p.A1187V 0.43 deleterious(0) possibly_damaging(0.578) TCGA-XK-AAIW-01 17 27086248 27086248 G A FAM222B Silent p.T243T 0.25 TCGA-XK-AAIW-01 17 27185652 27185652 G A ERAL1 Missense_Mutation p.G257D 0.07 deleterious(0.02) benign(0.134) TCGA-XK-AAIW-01 17 27187545 27187545 C T ERAL1 Missense_Mutation p.R430C 0.38 deleterious(0.04) benign(0.003) TCGA-XK-AAIW-01 17 27287826 27287826 T C SEZ6 Missense_Mutation p.D469G 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 27371958 27371958 C T PIPOX Missense_Mutation p.R66W 0.37 deleterious(0.01) possibly_damaging(0.871) TCGA-XK-AAIW-01 17 27380057 27380057 G A PIPOX Missense_Mutation p.R128H 0.46 tolerated(0.45) benign(0.187) TCGA-XK-AAIW-01 17 27400976 27400976 G A TIAF1 Missense_Mutation p.P81L 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-XK-AAIW-01 17 27420010 27420010 G A MYO18A Missense_Mutation p.R1646W 0.49 deleterious(0) probably_damaging(0.978) TCGA-XK-AAIW-01 17 27437606 27437606 C A MYO18A Missense_Mutation p.G979C 0.44 deleterious(0) possibly_damaging(0.869) TCGA-XK-AAIW-01 17 27448161 27448161 G A MYO18A Silent p.T480T 0.36 TCGA-XK-AAIW-01 17 27493529 27493529 G A MYO18A Missense_Mutation p.R144C 0.41 deleterious_low_confidence(0) possibly_damaging(0.696) TCGA-XK-AAIW-01 17 27818816 27818816 G A TAOK1 Missense_Mutation p.R255H 0.31 tolerated(0.25) possibly_damaging(0.517) TCGA-XK-AAIW-01 17 27849383 27849383 G A TAOK1 Missense_Mutation p.R665H 0.39 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 17 27903137 27903137 C T GIT1 Missense_Mutation p.D551N 0.41 tolerated(0.16) benign(0.012) TCGA-XK-AAIW-01 17 27943827 27943827 C T CORO6 Silent p.E299E 0.37 TCGA-XK-AAIW-01 17 27945843 27945843 G A CORO6 Missense_Mutation p.R200C 0.39 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 27958229 27958229 G A SSH2 Missense_Mutation p.A1301V 0.37 tolerated_low_confidence(0.07) benign(0.102) TCGA-XK-AAIW-01 17 27963449 27963449 G A SSH2 Missense_Mutation p.S573F 0.38 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-XK-AAIW-01 17 27963743 27963743 G T SSH2 Missense_Mutation p.P475H 0.36 deleterious(0.01) possibly_damaging(0.572) TCGA-XK-AAIW-01 17 28530244 28530244 G A SLC6A4 Silent p.C588C 0.22 TCGA-XK-AAIW-01 17 28548969 28548969 G A SLC6A4 Missense_Mutation p.T3M 0.22 deleterious_low_confidence(0.01) benign(0.363) TCGA-XK-AAIW-01 17 28849325 28849325 C T GOSR1 Missense_Mutation p.R228W 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 29131012 29131012 C T CRLF3 Missense_Mutation p.D82N 0.36 deleterious(0.01) possibly_damaging(0.536) TCGA-XK-AAIW-01 17 29231393 29231393 G A TEFM Silent p.D62D 0.19 TCGA-XK-AAIW-01 17 293240 293240 G A FAM101B Silent p.D50D 0.28 TCGA-XK-AAIW-01 17 29645977 29645977 T C EVI2A Missense_Mutation p.T42A 0.31 tolerated(0.28) benign(0.414) TCGA-XK-AAIW-01 17 29663474 29663474 A G NF1 Missense_Mutation p.K2044E 0.10 tolerated(0.25) probably_damaging(0.952) TCGA-XK-AAIW-01 17 30800864 30800864 C T PSMD11 Missense_Mutation p.S230L 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 3101147 3101147 G A OR1A2 Missense_Mutation p.S112N 0.20 tolerated(0.73) benign(0.144) TCGA-XK-AAIW-01 17 31323938 31323938 G A SPACA3 Missense_Mutation p.G141R 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 3144160 3144160 C T OR1D4 RNA 0.58 TCGA-XK-AAIW-01 17 32483083 32483083 G A ASIC2 Silent p.L157L 0.47 TCGA-XK-AAIW-01 17 32647883 32647883 C T CCL8 Missense_Mutation p.S86F 0.36 tolerated(0.57) benign(0.012) TCGA-XK-AAIW-01 17 32964564 32964564 C T TMEM132E Silent p.G756G 0.28 TCGA-XK-AAIW-01 17 3324785 3324785 C T OR3A3 Silent p.G308G 0.53 TCGA-XK-AAIW-01 17 33289429 33289429 A T ZNF830 Missense_Mutation p.R282W 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 33339066 33339066 G A RFFL Missense_Mutation p.T338I 0.45 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 17 33768113 33768113 C T SLFN13 Missense_Mutation p.R732H 0.32 deleterious(0.02) probably_damaging(0.989) TCGA-XK-AAIW-01 17 33769058 33769058 C A SLFN13 Missense_Mutation p.E482D 0.30 tolerated(0.63) benign(0.004) TCGA-XK-AAIW-01 17 33900674 33900674 C T PEX12 3'Flank 0.30 TCGA-XK-AAIW-01 17 33966626 33966626 C A AP2B1 Silent p.I428I 0.34 TCGA-XK-AAIW-01 17 34072633 34072633 C T GAS2L2 Missense_Mutation p.G628E 0.38 tolerated(0.66) benign(0.122) TCGA-XK-AAIW-01 17 34235617 34235617 G A AC015849.16 RNA 0.27 TCGA-XK-AAIW-01 17 34266305 34266305 G A LYZL6 Missense_Mutation p.A19V 0.41 deleterious(0) possibly_damaging(0.782) TCGA-XK-AAIW-01 17 3427532 3427532 C T TRPV3 Missense_Mutation p.G568D 0.28 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 3435992 3435992 G T TRPV3 Missense_Mutation p.L342I 0.36 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 34590412 34590412 G A TBC1D3C Nonsense_Mutation p.R15* 0.11 TCGA-XK-AAIW-01 17 34856988 34856988 G A MYO19 Missense_Mutation p.A723V 0.47 tolerated(0.2) benign(0.014) TCGA-XK-AAIW-01 17 34863649 34863649 G A MYO19 Missense_Mutation p.A449V 0.60 tolerated(0.2) benign(0.172) TCGA-XK-AAIW-01 17 34913159 34913159 A G GGNBP2 Silent p.T137T 0.22 TCGA-XK-AAIW-01 17 34943623 34943623 C T GGNBP2 Missense_Mutation p.T613M 0.42 tolerated_low_confidence(0.17) benign(0) TCGA-XK-AAIW-01 17 35563696 35563696 C T ACACA Splice_Site p.X1316_splice 0.46 TCGA-XK-AAIW-01 17 35591985 35591985 G A ACACA Nonsense_Mutation p.R1051* 0.33 TCGA-XK-AAIW-01 17 35632932 35632932 G A ACACA Silent p.S271S 0.38 TCGA-XK-AAIW-01 17 35798001 35798001 G T TADA2A Intron 0.14 TCGA-XK-AAIW-01 17 35836996 35836996 C T TADA2A Missense_Mutation p.A414V 0.30 deleterious(0.01) probably_damaging(0.985) TCGA-XK-AAIW-01 17 35872544 35872544 T C DUSP14 Missense_Mutation p.V57A 0.44 deleterious(0) possibly_damaging(0.737) TCGA-XK-AAIW-01 17 36091778 36091778 C T HNF1B Missense_Mutation p.G285S 0.28 deleterious(0.03) probably_damaging(0.993) TCGA-XK-AAIW-01 17 36093663 36093663 G C HNF1B Silent p.R232R 0.37 TCGA-XK-AAIW-01 17 36233925 36233925 G A YWHAEP7 RNA 0.22 TCGA-XK-AAIW-01 17 3628288 3628288 C T GSG2 Silent p.S353S 0.33 TCGA-XK-AAIW-01 17 3628712 3628712 T C GSG2 Missense_Mutation p.F495L 0.42 deleterious(0) probably_damaging(0.963) TCGA-XK-AAIW-01 17 3629159 3629159 C T GSG2 Missense_Mutation p.R644C 0.45 deleterious(0.05) benign(0.003) TCGA-XK-AAIW-01 17 36483525 36483525 C T GPR179 Missense_Mutation p.R1976H 0.25 tolerated(0.61) benign(0) TCGA-XK-AAIW-01 17 36486906 36486906 T C GPR179 Missense_Mutation p.K849R 0.52 tolerated(0.06) benign(0.048) TCGA-XK-AAIW-01 17 36489878 36489878 G A GPR179 Missense_Mutation p.L610F 0.32 deleterious(0.02) possibly_damaging(0.521) TCGA-XK-AAIW-01 17 3661129 3661129 G A ITGAE Silent p.H297H 0.41 TCGA-XK-AAIW-01 17 36872797 36872797 C T MLLT6 Missense_Mutation p.P405L 0.34 deleterious(0) unknown(0) TCGA-XK-AAIW-01 17 36879020 36879020 C T MLLT6 Missense_Mutation p.P961L 0.25 deleterious(0.01) probably_damaging(0.982) TCGA-XK-AAIW-01 17 36918698 36918698 C T PSMB3 Missense_Mutation p.A170V 0.38 deleterious(0.03) benign(0.108) TCGA-XK-AAIW-01 17 36936738 36936738 C T PIP4K2B Silent p.A158A 0.37 TCGA-XK-AAIW-01 17 36997589 36997589 G A C17orf98 Silent p.D18D 0.48 TCGA-XK-AAIW-01 17 37074902 37074902 C T LASP1 Silent p.D219D 0.17 TCGA-XK-AAIW-01 17 37791876 37791876 C A PPP1R1B Silent p.T154T 0.48 TCGA-XK-AAIW-01 17 3783724 3783724 C T CAMKK1 Missense_Mutation p.V276I 0.44 tolerated(0.14) possibly_damaging(0.469) TCGA-XK-AAIW-01 17 37866372 37866372 G A ERBB2 Missense_Mutation p.R226H 0.44 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 37881050 37881050 G A ERBB2 Silent p.T793T 0.40 TCGA-XK-AAIW-01 17 37884170 37884170 G A ERBB2 Missense_Mutation p.S1214N 0.47 tolerated(0.2) benign(0.421) TCGA-XK-AAIW-01 17 38080399 38080399 G A ORMDL3 Missense_Mutation p.R20C 0.44 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 17 38133270 38133270 G A GSDMA Missense_Mutation p.A433T 0.40 deleterious(0.01) possibly_damaging(0.8) TCGA-XK-AAIW-01 17 38241019 38241019 G A THRA Missense_Mutation p.R176H 0.30 tolerated(0.09) possibly_damaging(0.882) TCGA-XK-AAIW-01 17 38244645 38244645 C A THRA Missense_Mutation p.L292M 0.50 tolerated(0.25) probably_damaging(0.959) TCGA-XK-AAIW-01 17 38244663 38244663 G A THRA Missense_Mutation p.A298T 0.48 tolerated(0.3) possibly_damaging(0.901) TCGA-XK-AAIW-01 17 38289322 38289322 C T MSL1 Missense_Mutation p.R243W 0.67 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 38350064 38350064 G A RAPGEFL1 3'UTR 0.41 TCGA-XK-AAIW-01 17 38508633 38508633 G T RARA Missense_Mutation p.K227N 0.36 deleterious(0.02) probably_damaging(0.941) TCGA-XK-AAIW-01 17 3850872 3850872 G A ATP2A3 Missense_Mutation p.A303V 0.51 deleterious(0) possibly_damaging(0.772) TCGA-XK-AAIW-01 17 38564352 38564352 G A TOP2A Missense_Mutation p.T456M 0.61 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 17 38711171 38711171 G A CCR7 Silent p.C320C 0.47 TCGA-XK-AAIW-01 17 38711730 38711730 G A CCR7 Missense_Mutation p.A134V 0.29 tolerated(0.23) benign(0.063) TCGA-XK-AAIW-01 17 38950185 38950185 G A KRT28 Silent p.T364T 0.06 TCGA-XK-AAIW-01 17 38975947 38975947 G A KRT10 Missense_Mutation p.R399C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 17 38978721 38978721 G A KRT10 Silent p.S39S 0.35 TCGA-XK-AAIW-01 17 38991082 38991082 C T TMEM99 Missense_Mutation p.S105L 0.42 tolerated_low_confidence(0.42) benign(0) TCGA-XK-AAIW-01 17 39034435 39034435 A G KRT20 Silent p.I367I 0.09 TCGA-XK-AAIW-01 17 39116560 39116560 C T KRT39 Missense_Mutation p.R397H 0.12 deleterious(0.02) benign(0.293) TCGA-XK-AAIW-01 17 39135121 39135121 G A KRT40 Silent p.D377D 0.41 TCGA-XK-AAIW-01 17 39137273 39137273 C T KRT40 Missense_Mutation p.R273H 0.22 tolerated(0.15) benign(0.02) TCGA-XK-AAIW-01 17 39139338 39139338 G A KRT40 Missense_Mutation p.L164F 0.36 deleterious(0) possibly_damaging(0.826) TCGA-XK-AAIW-01 17 3919745 3919745 G T ZZEF1 Missense_Mutation p.L2673I 0.50 tolerated(0.12) probably_damaging(0.998) TCGA-XK-AAIW-01 17 39261978 39261978 C T KRTAP4-9 Missense_Mutation p.T113I 0.22 tolerated(0.06) unknown(0) TCGA-XK-AAIW-01 17 39406184 39406184 G A KRTAP9-4 Missense_Mutation p.C71Y 0.39 deleterious(0.02) unknown(0) TCGA-XK-AAIW-01 17 39411907 39411907 C T KRTAP9-9 Silent p.C90C 0.50 TCGA-XK-AAIW-01 17 39552805 39552805 C T KRT31 Missense_Mutation p.R152Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 17 39578560 39578560 T C KRT37 Missense_Mutation p.N287D 0.13 deleterious(0.01) possibly_damaging(0.859) TCGA-XK-AAIW-01 17 39579955 39579955 C T KRT37 Intron 0.19 TCGA-XK-AAIW-01 17 39635746 39635746 C T KRT35 Silent p.T188T 0.32 TCGA-XK-AAIW-01 17 39644629 39644629 G A KRT36 Missense_Mutation p.R189W 0.43 deleterious(0.02) probably_damaging(0.984) TCGA-XK-AAIW-01 17 39661783 39661783 C T KRT13 Missense_Mutation p.S7N 0.32 tolerated_low_confidence(0.1) unknown(0) TCGA-XK-AAIW-01 17 39723557 39723557 C T KRT9 Missense_Mutation p.G614R 0.48 unknown(0) TCGA-XK-AAIW-01 17 39739362 39739362 C T KRT14 Silent p.S435S 0.33 TCGA-XK-AAIW-01 17 39768447 39768447 C A KRT16 Missense_Mutation p.S165I 0.28 deleterious(0) probably_damaging(0.93) TCGA-XK-AAIW-01 17 39911898 39911898 G A JUP 3'UTR 0.75 TCGA-XK-AAIW-01 17 39927978 39927978 C A JUP Missense_Mutation p.M43I 0.27 tolerated(0.39) benign(0) TCGA-XK-AAIW-01 17 39974444 39974444 C T FKBP10 Silent p.P165P 0.44 TCGA-XK-AAIW-01 17 39994252 39994252 C T KLHL10 Missense_Mutation p.A23V 0.41 tolerated(0.34) benign(0.008) TCGA-XK-AAIW-01 17 39998228 39998228 A G KLHL10 Silent p.A116A 0.20 TCGA-XK-AAIW-01 17 40001400 40001400 C T KLHL10 Missense_Mutation p.A236V 0.45 tolerated(1) benign(0.021) TCGA-XK-AAIW-01 17 40001505 40001505 T C KLHL10 Missense_Mutation p.M271T 0.46 tolerated(0.35) benign(0.004) TCGA-XK-AAIW-01 17 40010842 40010842 T C KLHL11 Missense_Mutation p.Y426C 0.43 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 17 40054090 40054090 C T ACLY Silent p.T447T 0.33 TCGA-XK-AAIW-01 17 40062868 40062868 C T ACLY Missense_Mutation p.S260N 0.41 deleterious(0) benign(0.002) TCGA-XK-AAIW-01 17 4007994 4007994 C T ZZEF1 Silent p.T502T 0.45 TCGA-XK-AAIW-01 17 4008056 4008056 C T ZZEF1 Missense_Mutation p.A482T 0.46 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 40095414 40095414 C T TTC25 RNA 0.67 TCGA-XK-AAIW-01 17 4020385 4020385 C T ZZEF1 Missense_Mutation p.R192H 0.19 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 4020446 4020446 A T ZZEF1 Missense_Mutation p.F172I 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 40265744 40265744 C T KAT2A Missense_Mutation p.E813K 0.49 deleterious(0.01) possibly_damaging(0.791) TCGA-XK-AAIW-01 17 40272789 40272789 C T KAT2A Missense_Mutation p.R133H 0.32 tolerated(0.17) probably_damaging(0.932) TCGA-XK-AAIW-01 17 40321646 40321646 C T KCNH4 Missense_Mutation p.R480H 0.46 deleterious(0.01) possibly_damaging(0.84) TCGA-XK-AAIW-01 17 40362188 40362188 C T STAT5B Splice_Site p.X636_splice 0.38 TCGA-XK-AAIW-01 17 40557039 40557039 C T PTRF Missense_Mutation p.R280H 0.42 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 17 40629708 40629708 T C ATP6V0A1 Missense_Mutation p.S159P 0.30 tolerated(0.19) possibly_damaging(0.901) TCGA-XK-AAIW-01 17 40652751 40652751 A G ATP6V0A1 Missense_Mutation p.Y576C 0.43 deleterious(0.01) probably_damaging(0.969) TCGA-XK-AAIW-01 17 40652859 40652859 C T ATP6V0A1 Missense_Mutation p.A612V 0.36 deleterious(0) possibly_damaging(0.882) TCGA-XK-AAIW-01 17 40705752 40705752 G A HSD17B1 Intron 0.31 TCGA-XK-AAIW-01 17 40767068 40767068 G T TUBG1 3'UTR 0.43 TCGA-XK-AAIW-01 17 40825731 40825731 C T PLEKHH3 Silent p.R140R 0.29 TCGA-XK-AAIW-01 17 40845554 40845554 G A CNTNAP1 Missense_Mutation p.D998N 0.13 tolerated(0.05) benign(0.266) TCGA-XK-AAIW-01 17 4085622 4085622 G T ANKFY1 Missense_Mutation p.L701I 0.34 deleterious(0.01) benign(0.422) TCGA-XK-AAIW-01 17 40870502 40870502 G A EZH1 Missense_Mutation p.R301C 0.16 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 17 40933278 40933278 G A WNK4 Missense_Mutation p.V188M 0.12 deleterious(0) unknown(0) TCGA-XK-AAIW-01 17 40962900 40962900 C T BECN1 Missense_Mutation p.G411S 0.44 tolerated(0.23) possibly_damaging(0.754) TCGA-XK-AAIW-01 17 41003967 41003967 C T AOC3 Missense_Mutation p.H203Y 0.19 tolerated(1) benign(0.006) TCGA-XK-AAIW-01 17 41019975 41019975 G A AOC4P RNA 0.39 TCGA-XK-AAIW-01 17 41056010 41056010 C T G6PC Missense_Mutation p.S98F 0.16 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 17 41166147 41166147 G A IFI35 Missense_Mutation p.R233H 0.33 tolerated(0.2) benign(0.099) TCGA-XK-AAIW-01 17 41168121 41168121 A G VAT1 Missense_Mutation p.V380A 0.34 deleterious(0) benign(0.297) TCGA-XK-AAIW-01 17 41226394 41226394 C T BRCA1 Silent p.G1564G 0.47 TCGA-XK-AAIW-01 17 41244008 41244008 G A BRCA1 Silent p.S1180S 0.16 TCGA-XK-AAIW-01 17 41341626 41341626 G A NBR1 Missense_Mutation p.E168K 0.39 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 17 41345493 41345493 G A NBR1 Silent p.T454T 0.43 TCGA-XK-AAIW-01 17 4145692 4145692 A G ANKFY1 Missense_Mutation p.V63A 0.42 tolerated(0.05) probably_damaging(0.998) TCGA-XK-AAIW-01 17 41598905 41598905 C T DHX8 Missense_Mutation p.R1079C 0.34 deleterious(0) possibly_damaging(0.896) TCGA-XK-AAIW-01 17 41610182 41610182 C T ETV4 Missense_Mutation p.S224N 0.33 deleterious(0.05) benign(0.006) TCGA-XK-AAIW-01 17 41835926 41835926 C T SOST Missense_Mutation p.G62R 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 41908673 41908673 C T MPP3 Missense_Mutation p.R54H 0.15 tolerated(0.32) benign(0.168) TCGA-XK-AAIW-01 17 42030704 42030704 C T PYY Missense_Mutation p.A50T 0.30 tolerated(0.73) benign(0.062) TCGA-XK-AAIW-01 17 42170972 42170972 G A HDAC5 Missense_Mutation p.H110Y 0.26 deleterious(0) probably_damaging(0.922) TCGA-XK-AAIW-01 17 42226031 42226031 C T C17orf53 Missense_Mutation p.T287I 0.43 deleterious(0.03) benign(0.125) TCGA-XK-AAIW-01 17 42248207 42248207 G A ASB16 Missense_Mutation p.R17H 0.42 deleterious(0.04) benign(0.099) TCGA-XK-AAIW-01 17 42335881 42335881 C T SLC4A1 Silent p.E329E 0.31 TCGA-XK-AAIW-01 17 42461310 42461310 G A ITGA2B Missense_Mutation p.A317V 0.80 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 42512492 42512492 G A GPATCH8 Missense_Mutation p.R97W 0.46 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-XK-AAIW-01 17 42744798 42744798 G T C17orf104 Missense_Mutation p.A507S 0.44 tolerated(0.15) benign(0.228) TCGA-XK-AAIW-01 17 42929864 42929864 C T EFTUD2 Silent p.P876P 0.50 TCGA-XK-AAIW-01 17 42979959 42979959 G A CCDC103 Missense_Mutation p.C168Y 0.33 deleterious(0.02) benign(0.014) TCGA-XK-AAIW-01 17 43006261 43006261 G T KIF18B Missense_Mutation p.P550H 0.18 tolerated(0.05) benign(0.045) TCGA-XK-AAIW-01 17 43180471 43180471 C T NMT1 Silent p.I382I 0.24 TCGA-XK-AAIW-01 17 43333080 43333080 G T SPATA32 Missense_Mutation p.L157I 0.09 deleterious(0.01) possibly_damaging(0.899) TCGA-XK-AAIW-01 17 43531226 43531226 G A PLEKHM1 Silent p.P664P 0.16 TCGA-XK-AAIW-01 17 43585431 43585431 C A LRRC37A4P 3'Flank 0.27 TCGA-XK-AAIW-01 17 43907851 43907851 C T CRHR1 Silent p.G237G 0.38 TCGA-XK-AAIW-01 17 43922915 43922915 C T SPPL2C Missense_Mutation p.R215W 0.35 deleterious(0.05) probably_damaging(0.976) TCGA-XK-AAIW-01 17 44109032 44109032 G A KANSL1 Missense_Mutation p.A1043V 0.25 tolerated(0.14) benign(0.231) TCGA-XK-AAIW-01 17 44171967 44171967 G A KANSL1 Missense_Mutation p.R464C 0.26 deleterious(0) possibly_damaging(0.54) TCGA-XK-AAIW-01 17 44249479 44249479 C T KANSL1 Missense_Mutation p.A11T 0.30 deleterious(0) unknown(0) TCGA-XK-AAIW-01 17 4451488 4451488 G A MYBBP1A Silent p.N558N 0.45 TCGA-XK-AAIW-01 17 4455264 4455264 C T MYBBP1A Missense_Mutation p.A312T 0.42 deleterious(0.01) benign(0.38) TCGA-XK-AAIW-01 17 44594546 44594546 C T LRRC37A2 Intron 0.34 TCGA-XK-AAIW-01 17 4461665 4461665 G A GGT6 Missense_Mutation p.A376V 0.34 deleterious(0.01) benign(0.396) TCGA-XK-AAIW-01 17 44626527 44626527 G T LRRC37A2 Missense_Mutation p.R1341M 0.19 deleterious(0.01) probably_damaging(0.974) TCGA-XK-AAIW-01 17 4498568 4498568 C T SMTNL2 Missense_Mutation p.A312V 0.38 deleterious(0.01) possibly_damaging(0.621) TCGA-XK-AAIW-01 17 45012589 45012589 A G GOSR2 Intron 0.29 TCGA-XK-AAIW-01 17 45235647 45235647 C A CDC27 Nonsense_Mutation p.G134* 0.31 TCGA-XK-AAIW-01 17 4535496 4535496 C T ALOX15 Missense_Mutation p.A541T 0.38 deleterious(0.02) possibly_damaging(0.487) TCGA-XK-AAIW-01 17 45421567 45421567 A G EFCAB13 Missense_Mutation p.T115A 0.41 tolerated(0.13) benign(0.122) TCGA-XK-AAIW-01 17 45456578 45456578 T C EFCAB13 Missense_Mutation p.V514A 0.22 tolerated(0.23) benign(0.007) TCGA-XK-AAIW-01 17 45901638 45901638 T A MRPL10 Missense_Mutation p.Q250L 0.35 tolerated(0.09) possibly_damaging(0.848) TCGA-XK-AAIW-01 17 45994483 45994483 C T SP2 Missense_Mutation p.P349L 0.33 deleterious(0.02) benign(0.053) TCGA-XK-AAIW-01 17 4645350 4645350 C T ZMYND15 Missense_Mutation p.A323V 0.31 tolerated(0.92) benign(0.003) TCGA-XK-AAIW-01 17 46628442 46628442 C A HOXB3 Missense_Mutation p.G184W 0.16 deleterious(0) possibly_damaging(0.901) TCGA-XK-AAIW-01 17 46628468 46628468 C T HOXB3 Missense_Mutation p.G175D 0.46 tolerated(0.6) benign(0.01) TCGA-XK-AAIW-01 17 46628488 46628488 G A HOXB3 Silent p.S168S 0.56 TCGA-XK-AAIW-01 17 46655264 46655264 C T HOXB4 Missense_Mutation p.V140I 0.37 tolerated(0.37) benign(0.029) TCGA-XK-AAIW-01 17 46700277 46700277 C T HOXB9 Silent p.E246E 0.44 TCGA-XK-AAIW-01 17 46862492 46862493 - T TTLL6 Frame_Shift_Ins p.N611Kfs*2 0.37 TCGA-XK-AAIW-01 17 46871632 46871632 C T TTLL6 Intron 0.21 TCGA-XK-AAIW-01 17 46925456 46925456 A G CALCOCO2 Missense_Mutation p.T95A 0.33 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 17 46972665 46972665 G A ATP5G1 Missense_Mutation p.V89M 0.33 deleterious(0.03) possibly_damaging(0.73) TCGA-XK-AAIW-01 17 47004470 47004470 G T UBE2Z Missense_Mutation p.D347Y 0.53 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-XK-AAIW-01 17 47018301 47018301 C T SNF8 Missense_Mutation p.V77M 0.40 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 17 47115612 47115612 G A IGF2BP1 Missense_Mutation p.G162R 0.12 tolerated(0.3) benign(0.374) TCGA-XK-AAIW-01 17 4714135 4714135 G A PLD2 Missense_Mutation p.R300Q 0.21 tolerated(0.24) benign(0.006) TCGA-XK-AAIW-01 17 47247084 47247084 C T B4GALNT2 Silent p.A565A 0.24 TCGA-XK-AAIW-01 17 4725959 4725959 G A PLD2 Missense_Mutation p.A868T 0.59 tolerated(0.49) benign(0.029) TCGA-XK-AAIW-01 17 47376203 47376203 C A ZNF652 Missense_Mutation p.G465C 0.53 deleterious(0) possibly_damaging(0.893) TCGA-XK-AAIW-01 17 47583668 47583668 G A NGFR Silent p.T72T 0.39 TCGA-XK-AAIW-01 17 47899039 47899039 G A KAT7 Missense_Mutation p.A425T 0.32 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 47925338 47925338 G A TAC4 Silent p.S14S 0.32 TCGA-XK-AAIW-01 17 4798728 4798728 C T MINK1 Missense_Mutation p.R1057W 0.29 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 17 48051424 48051424 G T DLX4 3'UTR 0.23 TCGA-XK-AAIW-01 17 4806213 4806213 C A C17orf107 3'UTR 0.53 TCGA-XK-AAIW-01 17 48069204 48069204 G T DLX3 Missense_Mutation p.R181S 0.38 deleterious(0) probably_damaging(0.913) TCGA-XK-AAIW-01 17 48154745 48154745 C T ITGA3 Silent p.P691P 0.39 TCGA-XK-AAIW-01 17 48166588 48166588 C T ITGA3 Missense_Mutation p.H1054Y 0.45 tolerated(0.27) probably_damaging(0.998) TCGA-XK-AAIW-01 17 4836171 4836171 C T GP1BA Missense_Mutation p.T91M 0.60 tolerated(0.21) benign(0.113) TCGA-XK-AAIW-01 17 4837102 4837102 C T GP1BA Silent p.T401T 0.50 TCGA-XK-AAIW-01 17 4841189 4841189 G A SLC25A11 Silent p.D264D 0.40 TCGA-XK-AAIW-01 17 48431803 48431803 C T XYLT2 Silent p.S221S 0.27 TCGA-XK-AAIW-01 17 48456920 48456920 G A EME1 Silent p.A459A 0.33 TCGA-XK-AAIW-01 17 48542708 48542708 C T CHAD Missense_Mutation p.R344H 0.40 deleterious(0.02) possibly_damaging(0.607) TCGA-XK-AAIW-01 17 48628950 48628950 C T SPATA20 Missense_Mutation p.A552V 0.45 tolerated(0.11) possibly_damaging(0.514) TCGA-XK-AAIW-01 17 48646294 48646294 G A CACNA1G Silent p.R102R 0.40 TCGA-XK-AAIW-01 17 48680423 48680423 C T CACNA1G Silent p.S1344S 0.29 TCGA-XK-AAIW-01 17 48693726 48693726 C T CACNA1G Missense_Mutation p.R1668C 0.42 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 17 48694872 48694872 G A CACNA1G Missense_Mutation p.A1699T 0.23 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 48738336 48738336 C T ABCC3 Silent p.L287L 0.35 TCGA-XK-AAIW-01 17 48753279 48753279 C T ABCC3 Silent p.A965A 0.56 TCGA-XK-AAIW-01 17 48940438 48940438 C T TOB1 Missense_Mutation p.G314E 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 17 49237346 49237346 C T NME1 Silent p.S69S 0.16 TCGA-XK-AAIW-01 17 4927006 4927006 C T KIF1C Missense_Mutation p.R958W 0.61 deleterious_low_confidence(0.02) possibly_damaging(0.689) TCGA-XK-AAIW-01 17 5037204 5037204 G T USP6 Missense_Mutation p.R136M 0.28 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-XK-AAIW-01 17 5042866 5042866 C T USP6 Silent p.G465G 0.22 TCGA-XK-AAIW-01 17 5085329 5085329 G T ZNF594 Silent p.T741T 0.30 TCGA-XK-AAIW-01 17 51900983 51900983 C T KIF2B Missense_Mutation p.H197Y 0.32 tolerated(0.4) benign(0.418) TCGA-XK-AAIW-01 17 51901669 51901669 C T KIF2B Silent p.S425S 0.35 TCGA-XK-AAIW-01 17 51901789 51901789 G A KIF2B Silent p.Q465Q 0.43 TCGA-XK-AAIW-01 17 5241315 5241315 C G RABEP1 Missense_Mutation p.A177G 0.41 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 526807 526807 C T VPS53 Missense_Mutation p.R361H 0.22 deleterious(0) benign(0.3) TCGA-XK-AAIW-01 17 526886 526886 T C VPS53 Missense_Mutation p.R335G 0.17 deleterious(0) probably_damaging(0.962) TCGA-XK-AAIW-01 17 53014655 53014655 C T TOM1L1 Intron 0.27 TCGA-XK-AAIW-01 17 53046066 53046066 C T COX11 5'UTR 0.21 TCGA-XK-AAIW-01 17 53155477 53155477 C T STXBP4 Silent p.L409L 0.44 TCGA-XK-AAIW-01 17 5322726 5322726 C T NUP88 Missense_Mutation p.R82H 0.20 tolerated(0.06) possibly_damaging(0.88) TCGA-XK-AAIW-01 17 5372013 5372013 G A DHX33 Missense_Mutation p.A56V 0.48 tolerated(0.59) benign(0.024) TCGA-XK-AAIW-01 17 54554980 54554980 C A ANKFN1 Nonsense_Mutation p.C638* 0.10 TCGA-XK-AAIW-01 17 54926166 54926166 C T DGKE Missense_Mutation p.A333V 0.33 tolerated(0.24) benign(0.269) TCGA-XK-AAIW-01 17 54969233 54969233 G A TRIM25 Missense_Mutation p.A574V 0.39 deleterious(0.03) possibly_damaging(0.633) TCGA-XK-AAIW-01 17 54969543 54969543 C T TRIM25 Missense_Mutation p.A471T 0.38 tolerated(0.23) benign(0.386) TCGA-XK-AAIW-01 17 55027366 55027366 G A COIL Missense_Mutation p.R413W 0.48 deleterious(0.04) benign(0.271) TCGA-XK-AAIW-01 17 55191836 55191836 G A AKAP1 Missense_Mutation p.G707D 0.38 deleterious(0) probably_damaging(0.928) TCGA-XK-AAIW-01 17 56060232 56060232 C T VEZF1 Missense_Mutation p.V186M 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 17 56232829 56232829 C T OR4D1 Silent p.H105H 0.42 TCGA-XK-AAIW-01 17 56277092 56277092 G A EPX Missense_Mutation p.A492T 0.47 tolerated(0.12) benign(0.028) TCGA-XK-AAIW-01 17 56349138 56349138 C T MPO Silent p.T636T 0.44 TCGA-XK-AAIW-01 17 56350205 56350205 C A MPO Missense_Mutation p.D566Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 56356548 56356548 G A MPO Missense_Mutation p.R236C 0.53 tolerated(0.06) probably_damaging(0.977) TCGA-XK-AAIW-01 17 56381740 56381740 G A BZRAP1 Silent p.V1855V 0.12 TCGA-XK-AAIW-01 17 56387880 56387880 C A BZRAP1 Missense_Mutation p.R1231M 0.29 deleterious(0) possibly_damaging(0.519) TCGA-XK-AAIW-01 17 56393793 56393793 G A BZRAP1 Missense_Mutation p.R661C 0.36 deleterious(0) probably_damaging(0.942) TCGA-XK-AAIW-01 17 56400901 56400901 C T BZRAP1 Silent p.T316T 0.39 TCGA-XK-AAIW-01 17 56435456 56435456 G A RNF43 Missense_Mutation p.R561W 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.667) TCGA-XK-AAIW-01 17 56582922 56582922 G A MTMR4 Silent p.V338V 0.29 TCGA-XK-AAIW-01 17 56679761 56679761 C A TEX14 Missense_Mutation p.K515N 0.42 deleterious(0) probably_damaging(0.95) TCGA-XK-AAIW-01 17 57043078 57043078 C T PPM1E Missense_Mutation p.R203C 0.34 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 17 57126630 57126630 A G TRIM37 Missense_Mutation p.M480T 0.22 tolerated_low_confidence(0.55) benign(0) TCGA-XK-AAIW-01 17 57247185 57247185 C A PRR11 Silent p.A24A 0.36 TCGA-XK-AAIW-01 17 57651160 57651160 G A DHX40 Silent p.E202E 0.12 TCGA-XK-AAIW-01 17 57721655 57721655 A G CLTC Missense_Mutation p.N21D 0.90 tolerated(0.16) possibly_damaging(0.782) TCGA-XK-AAIW-01 17 57724940 57724940 C T CLTC Silent p.R144R 0.28 TCGA-XK-AAIW-01 17 57751078 57751078 T C CLTC Missense_Mutation p.V788A 0.44 deleterious(0.02) probably_damaging(0.924) TCGA-XK-AAIW-01 17 57774844 57774844 C T PTRH2 Missense_Mutation p.A166T 0.25 tolerated(0.08) benign(0.009) TCGA-XK-AAIW-01 17 57952052 57952052 T C TUBD1 Missense_Mutation p.E261G 0.37 deleterious(0.04) benign(0.382) TCGA-XK-AAIW-01 17 58150574 58150574 G A HEATR6 Missense_Mutation p.P179S 0.35 tolerated(0.54) benign(0.19) TCGA-XK-AAIW-01 17 58235717 58235717 C A CA4 Missense_Mutation p.F218L 0.52 deleterious(0.01) possibly_damaging(0.788) TCGA-XK-AAIW-01 17 58275733 58275733 G A USP32 Missense_Mutation p.P1108S 0.42 deleterious(0.05) probably_damaging(0.996) TCGA-XK-AAIW-01 17 58286900 58286900 G A USP32 Missense_Mutation p.T810I 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-XK-AAIW-01 17 59147276 59147276 C T BCAS3 Intron 0.25 TCGA-XK-AAIW-01 17 59560514 59560514 G A TBX4 Silent p.P425P 0.40 TCGA-XK-AAIW-01 17 59878708 59878708 G A BRIP1 Missense_Mutation p.A349V 0.45 deleterious(0.03) benign(0.065) TCGA-XK-AAIW-01 17 5993711 5993711 G A WSCD1 Missense_Mutation p.V205M 0.10 deleterious(0.04) benign(0.04) TCGA-XK-AAIW-01 17 60003749 60003749 G A INTS2 Missense_Mutation p.A94V 0.39 tolerated(0.09) probably_damaging(0.96) TCGA-XK-AAIW-01 17 60028341 60028341 G A MED13 Silent p.L2046L 0.42 TCGA-XK-AAIW-01 17 60062070 60062070 G A MED13 Missense_Mutation p.A878V 0.27 tolerated(0.12) benign(0.002) TCGA-XK-AAIW-01 17 60685410 60685410 C T TLK2 Silent p.G660G 0.36 TCGA-XK-AAIW-01 17 60749095 60749095 C T MRC2 Silent p.R401R 0.22 TCGA-XK-AAIW-01 17 60757603 60757603 G A MRC2 Missense_Mutation p.A791T 0.28 tolerated(0.15) possibly_damaging(0.595) TCGA-XK-AAIW-01 17 60767659 60767659 C T MRC2 Silent p.C1295C 0.24 TCGA-XK-AAIW-01 17 61466675 61466675 C T TANC2 Nonsense_Mutation p.R867* 0.24 TCGA-XK-AAIW-01 17 61498026 61498026 C T TANC2 Silent p.P1561P 0.59 TCGA-XK-AAIW-01 17 61556409 61556409 C T ACE Silent p.T153T 0.37 TCGA-XK-AAIW-01 17 61557711 61557711 G T ACE Silent p.T223T 0.32 TCGA-XK-AAIW-01 17 61574235 61574235 G A ACE Missense_Mutation p.A1194T 0.11 tolerated(0.17) possibly_damaging(0.61) TCGA-XK-AAIW-01 17 61601658 61601658 G A KCNH6 Missense_Mutation p.V79M 0.42 tolerated(0.41) benign(0.067) TCGA-XK-AAIW-01 17 61619769 61619769 C T KCNH6 Silent p.L708L 0.38 TCGA-XK-AAIW-01 17 61769176 61769176 C T MAP3K3 Silent p.G507G 0.41 TCGA-XK-AAIW-01 17 61775913 61775913 C T LIMD2 Silent p.%3D 0.29 TCGA-XK-AAIW-01 17 61781360 61781360 G A STRADA Intron 0.47 TCGA-XK-AAIW-01 17 61864408 61864408 C T DDX42 5'UTR 0.43 TCGA-XK-AAIW-01 17 61892959 61892959 A - DDX42 Frame_Shift_Del p.G648Efs*4 0.11 TCGA-XK-AAIW-01 17 61987062 61987062 C T CSHL1 3'Flank 0.46 TCGA-XK-AAIW-01 17 61995794 61995794 G A GH1 Missense_Mutation p.P28L 0.18 deleterious(0) possibly_damaging(0.857) TCGA-XK-AAIW-01 17 62007561 62007561 G A CD79B Silent p.N102N 0.43 TCGA-XK-AAIW-01 17 62019306 62019306 G A SCN4A Silent p.L1446L 0.42 TCGA-XK-AAIW-01 17 62026114 62026114 G A SCN4A Missense_Mutation p.R1001C 0.41 tolerated(0.3) probably_damaging(0.993) TCGA-XK-AAIW-01 17 62049810 62049810 C A SCN4A Missense_Mutation p.K98N 0.22 deleterious(0.01) possibly_damaging(0.619) TCGA-XK-AAIW-01 17 62081096 62081096 C T ICAM2 Missense_Mutation p.R186H 0.50 tolerated(0.67) benign(0) TCGA-XK-AAIW-01 17 62125289 62125289 G A ERN1 Missense_Mutation p.R820C 0.27 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 62130708 62130708 C T ERN1 Silent p.A659A 0.27 TCGA-XK-AAIW-01 17 62141351 62141351 A G ERN1 Missense_Mutation p.L361P 0.36 deleterious(0) probably_damaging(0.935) TCGA-XK-AAIW-01 17 62493082 62493082 C T POLG2 Missense_Mutation p.R2H 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-XK-AAIW-01 17 62496410 62496410 G A DDX5 Silent p.D492D 0.40 TCGA-XK-AAIW-01 17 62582227 62582227 T C SMURF2 Silent p.L154L 0.35 TCGA-XK-AAIW-01 17 62893421 62893421 G A LRRC37A3 5'UTR 0.20 TCGA-XK-AAIW-01 17 63010442 63010442 C T GNA13 Missense_Mutation p.R356H 0.51 deleterious(0.05) probably_damaging(0.998) TCGA-XK-AAIW-01 17 63534419 63534419 C T AXIN2 Missense_Mutation p.A368T 0.49 tolerated(0.18) benign(0.168) TCGA-XK-AAIW-01 17 63554079 63554079 G A AXIN2 Silent p.V220V 0.44 TCGA-XK-AAIW-01 17 63554635 63554635 G A AXIN2 Missense_Mutation p.P35L 0.40 deleterious(0.03) possibly_damaging(0.747) TCGA-XK-AAIW-01 17 63898327 63898327 G A CEP112 Silent p.R702R 0.43 TCGA-XK-AAIW-01 17 641189 641189 C T FAM57A Missense_Mutation p.R104C 0.07 deleterious(0.02) benign(0.007) TCGA-XK-AAIW-01 17 641198 641198 T C FAM57A Missense_Mutation p.S107P 0.35 tolerated(0.24) benign(0.026) TCGA-XK-AAIW-01 17 644829 644829 C T FAM57A 3'UTR 0.54 TCGA-XK-AAIW-01 17 64641529 64641529 C T PRKCA Silent p.C143C 0.40 TCGA-XK-AAIW-01 17 64728820 64728820 C T PRKCA Silent p.G311G 0.19 TCGA-XK-AAIW-01 17 65021029 65021029 C T CACNG4 Silent p.L120L 0.48 TCGA-XK-AAIW-01 17 65052280 65052280 G A CACNG1 Missense_Mutation p.A188T 0.36 deleterious(0) possibly_damaging(0.793) TCGA-XK-AAIW-01 17 651194 651194 G A GEMIN4 Missense_Mutation p.A30V 0.29 tolerated(0.18) benign(0.023) TCGA-XK-AAIW-01 17 65124824 65124824 C T HELZ Silent p.R1110R 0.17 TCGA-XK-AAIW-01 17 65162627 65162627 C T HELZ Missense_Mutation p.S621N 0.40 tolerated(0.16) benign(0.109) TCGA-XK-AAIW-01 17 6526296 6526296 C T KIAA0753 Missense_Mutation p.G337D 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 6528142 6528142 C T KIAA0753 Missense_Mutation p.R253Q 0.40 tolerated(0.16) possibly_damaging(0.515) TCGA-XK-AAIW-01 17 6531530 6531530 T G KIAA0753 Missense_Mutation p.N209H 0.28 deleterious(0.02) benign(0.264) TCGA-XK-AAIW-01 17 65343566 65343566 T C PSMD12 Silent p.R182R 0.26 TCGA-XK-AAIW-01 17 65942213 65942213 G A BPTF Silent p.V2463V 0.47 TCGA-XK-AAIW-01 17 65987971 65987971 C T C17orf58 3'UTR 0.23 TCGA-XK-AAIW-01 17 6610467 6610467 C T SLC13A5 Silent p.R37R 0.41 TCGA-XK-AAIW-01 17 66267677 66267677 T G SLC16A6 Silent p.P208P 0.31 TCGA-XK-AAIW-01 17 66364738 66364738 G A ARSG Missense_Mutation p.V252M 0.46 deleterious(0.01) probably_damaging(0.979) TCGA-XK-AAIW-01 17 66524014 66524014 G A PRKAR1A Missense_Mutation p.E248K 0.40 tolerated(0.15) benign(0.004) TCGA-XK-AAIW-01 17 66538252 66538252 G A FAM20A Missense_Mutation p.A328V 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 6684071 6684071 A G FBXO39 Missense_Mutation p.Y295C 0.44 tolerated(0.08) possibly_damaging(0.711) TCGA-XK-AAIW-01 17 66873752 66873752 C T ABCA8 Silent p.A1329A 0.26 TCGA-XK-AAIW-01 17 67108324 67108324 C T ABCA6 Missense_Mutation p.S711N 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 17 67501929 67501929 C T MAP2K6 Nonsense_Mutation p.R9* 0.34 TCGA-XK-AAIW-01 17 68129554 68129554 C T KCNJ16 3'UTR 0.38 TCGA-XK-AAIW-01 17 68171424 68171424 C T KCNJ2 Missense_Mutation p.R82W 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 6902685 6902685 C T ALOX12 Missense_Mutation p.A236V 0.11 tolerated(0.17) benign(0.025) TCGA-XK-AAIW-01 17 6945091 6945091 C T SLC16A11 Silent p.T441T 0.22 TCGA-XK-AAIW-01 17 6978336 6978336 G A CLEC10A 3'UTR 0.41 TCGA-XK-AAIW-01 17 704209 704209 G A NXN Missense_Mutation p.L430F 0.31 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 17 704251 704251 C T NXN Missense_Mutation p.A416T 0.37 tolerated(0.06) benign(0.013) TCGA-XK-AAIW-01 17 7097030 7097030 C T DLG4 Missense_Mutation p.R559Q 0.31 tolerated(1) benign(0.155) TCGA-XK-AAIW-01 17 71193077 71193077 G A COG1 Missense_Mutation p.C200Y 0.27 tolerated(0.11) possibly_damaging(0.498) TCGA-XK-AAIW-01 17 71228390 71228390 C T FAM104A Missense_Mutation p.G19E 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-XK-AAIW-01 17 7132764 7132764 C T DVL2 Silent p.T250T 0.27 TCGA-XK-AAIW-01 17 7133391 7133391 C T DVL2 Missense_Mutation p.R165H 0.45 tolerated(0.1) probably_damaging(0.99) TCGA-XK-AAIW-01 17 71384050 71384050 C T SDK2 Missense_Mutation p.R1440H 0.45 deleterious(0.01) possibly_damaging(0.803) TCGA-XK-AAIW-01 17 71394314 71394314 G A SDK2 Missense_Mutation p.R1072C 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 17 71431641 71431641 G A SDK2 Silent p.F381F 0.46 TCGA-XK-AAIW-01 17 7214356 7214356 A T EIF5A Missense_Mutation p.D92V 0.41 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 17 7216091 7216091 C T GPS2 Missense_Mutation p.R323Q 0.15 deleterious_low_confidence(0.04) benign(0.001) TCGA-XK-AAIW-01 17 7216788 7216788 G A GPS2 Missense_Mutation p.A212V 0.42 deleterious(0.02) benign(0.168) TCGA-XK-AAIW-01 17 7217629 7217629 G A GPS2 Missense_Mutation p.R100W 0.47 deleterious(0.01) benign(0.006) TCGA-XK-AAIW-01 17 72306164 72306164 C T DNAI2 Silent p.D452D 0.36 TCGA-XK-AAIW-01 17 72347026 72347026 G A AC103809.2 Silent p.C95C 0.35 TCGA-XK-AAIW-01 17 72443003 72443003 G A GPRC5C Missense_Mutation p.D433N 0.36 deleterious(0.03) benign(0.275) TCGA-XK-AAIW-01 17 7256426 7256426 G A KCTD11 Silent p.A55A 0.46 TCGA-XK-AAIW-01 17 72736966 72736966 C T RAB37 Silent p.D56D 0.42 TCGA-XK-AAIW-01 17 72769791 72769791 C A NAT9 Missense_Mutation p.Q38H 0.32 deleterious(0) probably_damaging(0.971) TCGA-XK-AAIW-01 17 72843504 72843504 G A GRIN2C Silent p.A648A 0.35 TCGA-XK-AAIW-01 17 72846864 72846864 C T GRIN2C Missense_Mutation p.V386M 0.30 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 17 72859228 72859228 C T FDXR Missense_Mutation p.A482T 0.53 tolerated(0.61) benign(0.003) TCGA-XK-AAIW-01 17 7287852 7287852 G A TNK1 Missense_Mutation p.V306M 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 72916331 72916331 C T USH1G Silent p.P200P 0.56 TCGA-XK-AAIW-01 17 72943091 72943091 G A OTOP3 Missense_Mutation p.A381T 0.43 tolerated(0.07) benign(0.124) TCGA-XK-AAIW-01 17 72954478 72954478 G A HID1 Missense_Mutation p.R446C 0.42 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 17 7317668 7317668 C T NLGN2 Missense_Mutation p.R172C 0.50 tolerated(0.07) probably_damaging(0.994) TCGA-XK-AAIW-01 17 7317763 7317763 C A NLGN2 Silent p.A203A 0.38 TCGA-XK-AAIW-01 17 73208112 73208112 C T NUP85 Nonsense_Mutation p.R106* 0.24 TCGA-XK-AAIW-01 17 7324875 7324875 C T SPEM1 Missense_Mutation p.A294V 0.45 tolerated(0.11) benign(0.007) TCGA-XK-AAIW-01 17 7329619 7329619 G T C17orf74 Missense_Mutation p.Q103H 0.22 tolerated(0.54) benign(0.019) TCGA-XK-AAIW-01 17 7330138 7330138 G T C17orf74 Missense_Mutation p.W276C 0.31 tolerated(0.34) probably_damaging(0.95) TCGA-XK-AAIW-01 17 7330459 7330459 T G C17orf74 Silent p.R383R 0.60 TCGA-XK-AAIW-01 17 7346082 7346082 C A FGF11 Missense_Mutation p.A193D 0.39 tolerated(0.06) possibly_damaging(0.898) TCGA-XK-AAIW-01 17 73493881 73493881 C - KIAA0195 Frame_Shift_Del p.H1145Ifs*95 0.22 TCGA-XK-AAIW-01 17 7351905 7351905 C T CHRNB1 Silent p.G206G 0.44 TCGA-XK-AAIW-01 17 73569164 73569164 C T LLGL2 Missense_Mutation p.R844W 0.24 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 17 7359976 7359976 C T CHRNB1 Silent p.S480S 0.45 TCGA-XK-AAIW-01 17 7367125 7367125 C T ZBTB4 Silent p.P392P 0.45 TCGA-XK-AAIW-01 17 73695894 73695894 G A SAP30BP Silent p.S113S 0.34 TCGA-XK-AAIW-01 17 73729577 73729577 C T ITGB4 Silent p.G487G 0.33 TCGA-XK-AAIW-01 17 73729624 73729624 G A ITGB4 Missense_Mutation p.C503Y 0.29 deleterious(0) possibly_damaging(0.883) TCGA-XK-AAIW-01 17 73738694 73738694 C T ITGB4 Silent p.G938G 0.39 TCGA-XK-AAIW-01 17 73746878 73746878 G A ITGB4 Missense_Mutation p.A1198T 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 17 73815809 73815809 G A UNK Missense_Mutation p.A531T 0.47 deleterious(0.04) benign(0.012) TCGA-XK-AAIW-01 17 73895695 73895695 G - MRPL38 Frame_Shift_Del p.F258Sfs*54 0.22 TCGA-XK-AAIW-01 17 73897876 73897876 G A MRPL38 Nonsense_Mutation p.R170* 0.17 TCGA-XK-AAIW-01 17 73969706 73969706 C T ACOX1 Intron 0.19 TCGA-XK-AAIW-01 17 74011183 74011183 C T EVPL Missense_Mutation p.R679Q 0.50 tolerated(0.28) probably_damaging(0.997) TCGA-XK-AAIW-01 17 74018511 74018511 G A EVPL Missense_Mutation p.R197W 0.42 deleterious(0.02) benign(0.01) TCGA-XK-AAIW-01 17 74019483 74019483 C T EVPL Missense_Mutation p.E124K 0.52 deleterious(0.03) benign(0.31) TCGA-XK-AAIW-01 17 74019736 74019736 C A EVPL Splice_Site p.X67_splice 0.62 TCGA-XK-AAIW-01 17 7404358 7404358 G A POLR2A Missense_Mutation p.G661S 0.43 probably_damaging(0.913) TCGA-XK-AAIW-01 17 74077421 74077421 G A ZACN Missense_Mutation p.V203I 0.36 tolerated(0.44) possibly_damaging(0.686) TCGA-XK-AAIW-01 17 74077646 74077646 G A ZACN Silent p.A230A 0.39 TCGA-XK-AAIW-01 17 74087307 74087307 C T EXOC7 Missense_Mutation p.R273H 0.36 deleterious(0.02) probably_damaging(0.985) TCGA-XK-AAIW-01 17 7415850 7415850 C T POLR2A Missense_Mutation p.A1516V 0.43 benign(0.065) TCGA-XK-AAIW-01 17 7415883 7415883 C T POLR2A Missense_Mutation p.A1527V 0.35 benign(0.015) TCGA-XK-AAIW-01 17 74286133 74286133 C T QRICH2 Silent p.L1080L 0.35 TCGA-XK-AAIW-01 17 74288562 74288562 C T QRICH2 Missense_Mutation p.R583H 0.17 tolerated(0.56) benign(0.002) TCGA-XK-AAIW-01 17 74288956 74288956 G A QRICH2 Missense_Mutation p.R452C 0.38 tolerated(0.06) possibly_damaging(0.599) TCGA-XK-AAIW-01 17 74289739 74289739 C T QRICH2 Missense_Mutation p.A191T 0.39 tolerated(0.14) benign(0.203) TCGA-XK-AAIW-01 17 74382513 74382513 G A SPHK1 Missense_Mutation p.A186T 0.44 deleterious(0.01) possibly_damaging(0.676) TCGA-XK-AAIW-01 17 74387399 74387399 C T UBE2O Silent p.S1168S 0.42 TCGA-XK-AAIW-01 17 74469941 74469941 C T RHBDF2 Missense_Mutation p.D569N 0.45 deleterious(0) benign(0.02) TCGA-XK-AAIW-01 17 74474946 74474946 C T RHBDF2 Missense_Mutation p.R234H 0.17 deleterious(0.01) benign(0.103) TCGA-XK-AAIW-01 17 74570475 74570475 C T ST6GALNAC2 Silent p.P111P 0.33 TCGA-XK-AAIW-01 17 74625190 74625190 C T ST6GALNAC1 Silent p.T245T 0.36 TCGA-XK-AAIW-01 17 74729657 74729657 C T METTL23 Silent p.H154H 0.30 TCGA-XK-AAIW-01 17 7481551 7481551 C T EIF4A1 Silent p.N355N 0.24 TCGA-XK-AAIW-01 17 7496151 7496151 C T FXR2 Silent p.P530P 0.31 TCGA-XK-AAIW-01 17 7499262 7499262 C A FXR2 Missense_Mutation p.E237D 0.43 tolerated(0.12) benign(0.091) TCGA-XK-AAIW-01 17 75208225 75208225 G C SEC14L1 Missense_Mutation p.G602A 0.21 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 17 7535020 7535020 C A SHBG Silent p.P223P 0.39 TCGA-XK-AAIW-01 17 7536652 7536652 C T SHBG Silent p.G397G 0.30 TCGA-XK-AAIW-01 17 7559184 7559184 G A ATP1B2 Missense_Mutation p.A282T 0.29 tolerated(1) benign(0.114) TCGA-XK-AAIW-01 17 7579442 7579442 G A TP53 Missense_Mutation p.P82L 0.40 tolerated(0.16) benign(0.003) TCGA-XK-AAIW-01 17 7579467 7579467 C T TP53 Missense_Mutation p.A74T 0.38 tolerated(0.56) benign(0.003) TCGA-XK-AAIW-01 17 7608903 7608903 G A EFNB3 5'UTR 0.40 TCGA-XK-AAIW-01 17 76113374 76113374 G A TMC6 Silent p.C751C 0.44 TCGA-XK-AAIW-01 17 7611488 7611488 G A EFNB3 Missense_Mutation p.R112H 0.33 deleterious(0) probably_damaging(0.933) TCGA-XK-AAIW-01 17 76120763 76120763 C T TMC6 Missense_Mutation p.V245M 0.31 deleterious(0) probably_damaging(0.957) TCGA-XK-AAIW-01 17 76422601 76422601 G A AC061992.1 Missense_Mutation p.G65S 0.28 unknown(0) TCGA-XK-AAIW-01 17 7644157 7644157 G A DNAH2 Silent p.A512A 0.44 TCGA-XK-AAIW-01 17 76464776 76464776 C T DNAH17 Missense_Mutation p.V2887I 0.34 benign(0.337) TCGA-XK-AAIW-01 17 76471508 76471508 C A DNAH17 Missense_Mutation p.R2774L 0.49 probably_damaging(1) TCGA-XK-AAIW-01 17 76488767 76488767 G T DNAH17 Silent p.T2149T 0.41 TCGA-XK-AAIW-01 17 76497380 76497380 C T DNAH17 Missense_Mutation p.R1776H 0.51 benign(0.194) TCGA-XK-AAIW-01 17 76498050 76498050 A G DNAH17-AS1 3'UTR 0.16 TCGA-XK-AAIW-01 17 7657810 7657810 G A DNAH2 Intron 0.24 TCGA-XK-AAIW-01 17 7691263 7691263 C T DNAH2 Missense_Mutation p.A2230V 0.49 benign(0) TCGA-XK-AAIW-01 17 7691458 7691458 G A DNAH2 Missense_Mutation p.A2266T 0.25 benign(0.001) TCGA-XK-AAIW-01 17 7695266 7695266 C T DNAH2 Missense_Mutation p.T2311I 0.34 benign(0.001) TCGA-XK-AAIW-01 17 77040182 77040182 G A C1QTNF1 Silent p.P44P 0.50 TCGA-XK-AAIW-01 17 7721112 7721112 G A DNAH2 Missense_Mutation p.A3392T 0.12 possibly_damaging(0.665) TCGA-XK-AAIW-01 17 7734419 7734419 G A DNAH2 Silent p.E4082E 0.45 TCGA-XK-AAIW-01 17 7736702 7736702 T C DNAH2 Missense_Mutation p.Y4379H 0.45 probably_damaging(0.982) TCGA-XK-AAIW-01 17 7748892 7748892 C T KDM6B Missense_Mutation p.P7L 0.30 unknown(0) TCGA-XK-AAIW-01 17 77709121 77709121 C T ENPP7 Missense_Mutation p.R227W 0.39 tolerated(0.08) probably_damaging(0.999) TCGA-XK-AAIW-01 17 77709383 77709383 C T ENPP7 Missense_Mutation p.A314V 0.19 deleterious(0.01) benign(0.109) TCGA-XK-AAIW-01 17 77758430 77758430 C T CBX2 Silent p.L396L 0.55 TCGA-XK-AAIW-01 17 77768741 77768741 C T CBX8 Missense_Mutation p.R288K 0.56 tolerated(0.43) benign(0.067) TCGA-XK-AAIW-01 17 77809045 77809045 C T CBX4 Silent p.P132P 0.37 TCGA-XK-AAIW-01 17 77914707 77914707 C T TBC1D16 Missense_Mutation p.G752D 0.27 deleterious_low_confidence(0.04) benign(0.012) TCGA-XK-AAIW-01 17 77926467 77926467 G A TBC1D16 Silent p.R310R 0.15 TCGA-XK-AAIW-01 17 78011943 78011943 G A CCDC40 Silent p.S17S 0.44 TCGA-XK-AAIW-01 17 78156559 78156559 C T CARD14 Nonsense_Mutation p.Q107* 0.35 TCGA-XK-AAIW-01 17 78169064 78169064 G A CARD14 Silent p.A477A 0.96 TCGA-XK-AAIW-01 17 78197133 78197133 C T SLC26A11 Silent p.I170I 0.36 TCGA-XK-AAIW-01 17 78265574 78265574 C T RNF213 Silent p.G473G 0.42 TCGA-XK-AAIW-01 17 78293254 78293254 G A RNF213 Intron 0.39 TCGA-XK-AAIW-01 17 78320610 78320610 C T RNF213 Silent p.C2825C 0.43 TCGA-XK-AAIW-01 17 78341603 78341603 G A RNF213 Missense_Mutation p.R3976H 0.10 benign(0.001) TCGA-XK-AAIW-01 17 78349610 78349610 G A RNF213 Silent p.L4375L 0.16 TCGA-XK-AAIW-01 17 78360611 78360611 G A RNF213 Missense_Mutation p.V4948M 0.36 benign(0.047) TCGA-XK-AAIW-01 17 78409945 78409945 C T ENDOV 3'UTR 0.39 TCGA-XK-AAIW-01 17 7842903 7842903 C T CNTROB Missense_Mutation p.R334W 0.36 tolerated(0.36) possibly_damaging(0.885) TCGA-XK-AAIW-01 17 7842986 7842986 C A CNTROB Silent p.T361T 0.49 TCGA-XK-AAIW-01 17 7846781 7846781 C T CNTROB Missense_Mutation p.R462W 0.59 deleterious(0) probably_damaging(0.935) TCGA-XK-AAIW-01 17 78857702 78857702 C T RPTOR Missense_Mutation p.A591V 0.19 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 17 7907408 7907408 C T GUCY2D Silent p.S320S 0.50 TCGA-XK-AAIW-01 17 79077815 79077815 T C BAIAP2 Missense_Mutation p.S325P 0.41 tolerated(0.06) benign(0.009) TCGA-XK-AAIW-01 17 7919139 7919139 G A GUCY2D Missense_Mutation p.R1008H 0.52 tolerated(0.06) probably_damaging(0.961) TCGA-XK-AAIW-01 17 79202784 79202784 C T ENTHD2 Missense_Mutation p.A508T 0.52 tolerated(0.31) benign(0.092) TCGA-XK-AAIW-01 17 79204366 79204366 G T ENTHD2 Missense_Mutation p.P336H 0.52 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 17 79226449 79226449 G A SLC38A10 Silent p.H497H 0.49 TCGA-XK-AAIW-01 17 79278503 79278503 C T LINC00482 RNA 0.36 TCGA-XK-AAIW-01 17 79405428 79405428 G A RP11-1055B8.7 Missense_Mutation p.A131T 0.50 probably_damaging(0.995) TCGA-XK-AAIW-01 17 79409833 79409833 C T RP11-1055B8.7 Silent p.S486S 0.23 TCGA-XK-AAIW-01 17 79496288 79496288 C T FSCN2 Missense_Mutation p.T244M 0.47 deleterious(0.01) possibly_damaging(0.841) TCGA-XK-AAIW-01 17 79514341 79514341 G A C17orf70 Silent p.N589N 0.42 TCGA-XK-AAIW-01 17 79536061 79536061 T C NPLOC4 Missense_Mutation p.D477G 0.36 tolerated(0.32) benign(0.257) TCGA-XK-AAIW-01 17 79657240 79657240 C T HGS Silent p.S148S 0.48 TCGA-XK-AAIW-01 17 79663968 79663968 T C HGS Missense_Mutation p.Y608H 0.33 tolerated(0.26) benign(0.125) TCGA-XK-AAIW-01 17 79667775 79667775 G A HGS Silent p.P689P 0.34 TCGA-XK-AAIW-01 17 79674394 79674394 C T MRPL12 3'UTR 0.67 TCGA-XK-AAIW-01 17 79682084 79682084 C T SLC25A10 Silent p.S65S 0.18 TCGA-XK-AAIW-01 17 79792477 79792477 C T PPP1R27 Silent p.K81K 0.39 TCGA-XK-AAIW-01 17 79803786 79803786 C T P4HB Missense_Mutation p.V380M 0.46 deleterious(0) possibly_damaging(0.886) TCGA-XK-AAIW-01 17 79826709 79826709 C T ARHGDIA 3'UTR 0.53 TCGA-XK-AAIW-01 17 7984217 7984217 T C ALOX12B Missense_Mutation p.N171S 0.37 tolerated(0.19) benign(0.017) TCGA-XK-AAIW-01 17 79892848 79892848 T A PYCR1 Missense_Mutation p.D165V 0.22 tolerated(0.18) possibly_damaging(0.572) TCGA-XK-AAIW-01 17 79941442 79941442 C T ASPSCR1 Silent p.S57S 0.30 TCGA-XK-AAIW-01 17 79991650 79991650 C T RAC3 Missense_Mutation p.A175V 0.58 tolerated_low_confidence(0.07) benign(0.055) TCGA-XK-AAIW-01 17 79993888 79993888 C T DCXR Missense_Mutation p.G228D 0.49 tolerated(0.09) benign(0.016) TCGA-XK-AAIW-01 17 80016226 80016226 C A DUS1L Missense_Mutation p.D425Y 0.14 deleterious(0) probably_damaging(0.962) TCGA-XK-AAIW-01 17 80044224 80044224 G T FASN Missense_Mutation p.P1213H 0.41 tolerated(0.05) benign(0.004) TCGA-XK-AAIW-01 17 80046084 80046084 G A FASN Missense_Mutation p.T898M 0.44 tolerated(0.06) possibly_damaging(0.765) TCGA-XK-AAIW-01 17 80364301 80364301 G T OGFOD3 Missense_Mutation p.L161M 0.31 tolerated(0.09) possibly_damaging(0.793) TCGA-XK-AAIW-01 17 80417915 80417915 C T NARF Silent p.A25A 0.42 TCGA-XK-AAIW-01 17 80417933 80417933 C T NARF Silent p.A31A 0.48 TCGA-XK-AAIW-01 17 80439021 80439021 G A NARF Missense_Mutation p.A235T 0.36 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 17 8049394 8049394 T C PER1 Silent p.G700G 0.38 TCGA-XK-AAIW-01 17 8050579 8050579 G A PER1 Missense_Mutation p.P540S 0.38 tolerated(0.6) benign(0.053) TCGA-XK-AAIW-01 17 8052891 8052891 C T PER1 Missense_Mutation p.V248M 0.39 deleterious(0.04) probably_damaging(0.948) TCGA-XK-AAIW-01 17 80615693 80615693 G A RAB40B 3'UTR 0.42 TCGA-XK-AAIW-01 17 80678199 80678199 G A FN3KRP Silent p.K115K 0.38 TCGA-XK-AAIW-01 17 80696418 80696418 G A FN3K Silent p.T65T 0.40 TCGA-XK-AAIW-01 17 80885101 80885101 C T TBCD Silent p.D837D 0.50 TCGA-XK-AAIW-01 17 80895147 80895147 C T TBCD Silent p.D1064D 0.34 TCGA-XK-AAIW-01 17 81006748 81006748 C T B3GNTL1 Intron 0.32 TCGA-XK-AAIW-01 17 8158851 8158851 C T PFAS Missense_Mutation p.A139V 0.26 tolerated(0.27) benign(0.004) TCGA-XK-AAIW-01 17 8167112 8167112 A T PFAS Missense_Mutation p.N550I 0.33 deleterious(0) possibly_damaging(0.756) TCGA-XK-AAIW-01 17 8193159 8193159 G A RANGRF Missense_Mutation p.E156K 0.36 tolerated(0.83) benign(0.154) TCGA-XK-AAIW-01 17 8195891 8195891 G A SLC25A35 Nonsense_Mutation p.Q131* 0.17 TCGA-XK-AAIW-01 17 8273378 8273378 G A KRBA2 Missense_Mutation p.R185W 0.40 tolerated(0.11) benign(0.01) TCGA-XK-AAIW-01 17 8370449 8370449 G A NDEL1 3'UTR 0.27 TCGA-XK-AAIW-01 17 8448825 8448825 T C MYH10 Missense_Mutation p.K458E 0.38 probably_damaging(0.996) TCGA-XK-AAIW-01 17 8647479 8647479 G A CCDC42 Missense_Mutation p.A36V 0.30 tolerated(0.06) benign(0.02) TCGA-XK-AAIW-01 17 8732104 8732104 C T PIK3R6 Missense_Mutation p.G365R 0.56 tolerated(1) benign(0.06) TCGA-XK-AAIW-01 17 8791557 8791557 G A PIK3R5 Missense_Mutation p.T516M 0.46 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 17 8792166 8792166 T C PIK3R5 Missense_Mutation p.Q313R 0.33 tolerated(0.06) benign(0.063) TCGA-XK-AAIW-01 17 902045 902045 G A TIMM22 Missense_Mutation p.V89M 0.35 deleterious(0.01) possibly_damaging(0.622) TCGA-XK-AAIW-01 17 916348 916348 G A ABR Silent p.N616N 0.38 TCGA-XK-AAIW-01 17 9395227 9395227 C T STX8 Missense_Mutation p.G154S 0.21 deleterious(0.02) probably_damaging(0.949) TCGA-XK-AAIW-01 17 9471774 9471774 C T STX8 Missense_Mutation p.D11N 0.29 tolerated(0.06) probably_damaging(0.959) TCGA-XK-AAIW-01 17 9489197 9489197 C T WDR16 Silent p.L60L 0.37 TCGA-XK-AAIW-01 17 9820569 9820569 G A GAS7 Silent p.I469I 0.21 TCGA-XK-AAIW-01 17 9830018 9830018 G A GAS7 Silent p.C318C 0.42 TCGA-XK-AAIW-01 17 994938 994938 G A ABR Silent p.S166S 0.46 TCGA-XK-AAIW-01 18 10546334 10546334 C T NAPG Missense_Mutation p.A173V 0.27 deleterious(0) possibly_damaging(0.774) TCGA-XK-AAIW-01 18 12351331 12351331 C A AFG3L2 Missense_Mutation p.G467V 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 18 12351345 12351345 C T AFG3L2 Silent p.A462A 0.29 TCGA-XK-AAIW-01 18 13087063 13087063 C T CEP192 Silent p.G1888G 0.31 TCGA-XK-AAIW-01 18 13645549 13645549 C T LDLRAD4 Missense_Mutation p.R272C 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.453) TCGA-XK-AAIW-01 18 13645640 13645640 C A LDLRAD4 Missense_Mutation p.P302H 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.886) TCGA-XK-AAIW-01 18 13666632 13666632 C T FAM210A Missense_Mutation p.M222I 0.23 tolerated(0.69) benign(0.012) TCGA-XK-AAIW-01 18 13731575 13731575 C T RNMT Missense_Mutation p.A20V 0.42 tolerated_low_confidence(0.26) benign(0.003) TCGA-XK-AAIW-01 18 13737029 13737029 C T RNMT Nonsense_Mutation p.R192* 0.34 TCGA-XK-AAIW-01 18 13826321 13826321 T C MC5R Missense_Mutation p.V186A 0.05 deleterious(0.03) possibly_damaging(0.569) TCGA-XK-AAIW-01 18 14787086 14787086 C T ANKRD30B Missense_Mutation p.S574F 0.18 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 18 163395 163395 C T USP14 Missense_Mutation p.A35V 0.57 deleterious(0) possibly_damaging(0.877) TCGA-XK-AAIW-01 18 179030 179030 C T USP14 Missense_Mutation p.A98V 0.46 tolerated(0.08) possibly_damaging(0.53) TCGA-XK-AAIW-01 18 18533607 18533607 C T ROCK1 Silent p.T1331T 0.42 TCGA-XK-AAIW-01 18 18562759 18562759 G A ROCK1 Silent p.L842L 0.51 TCGA-XK-AAIW-01 18 19110307 19110307 C T ESCO1 Silent p.T840T 0.34 TCGA-XK-AAIW-01 18 19140885 19140885 T C ESCO1 Missense_Mutation p.N630D 0.12 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 18 192883 192883 C T USP14 Missense_Mutation p.A149V 0.36 deleterious(0.04) possibly_damaging(0.836) TCGA-XK-AAIW-01 18 19345871 19345871 G A MIB1 Missense_Mutation p.R123H 0.13 deleterious(0.03) probably_damaging(0.962) TCGA-XK-AAIW-01 18 19348668 19348668 C T MIB1 Silent p.D162D 0.27 TCGA-XK-AAIW-01 18 198100 198100 C T USP14 Silent p.I243I 0.34 TCGA-XK-AAIW-01 18 19996934 19996934 C A CTAGE1 Nonsense_Mutation p.G281* 0.17 TCGA-XK-AAIW-01 18 19997347 19997347 A G CTAGE1 Missense_Mutation p.I143T 0.40 tolerated(0.06) possibly_damaging(0.844) TCGA-XK-AAIW-01 18 20562268 20562268 C T RBBP8 Silent p.G172G 0.23 TCGA-XK-AAIW-01 18 21107861 21107861 C T C18orf8 Missense_Mutation p.A431V 0.38 tolerated(0.77) benign(0) TCGA-XK-AAIW-01 18 21114442 21114442 C T NPC1 Missense_Mutation p.A1187T 0.45 tolerated(0.07) probably_damaging(0.924) TCGA-XK-AAIW-01 18 21124372 21124372 A G NPC1 Missense_Mutation p.V689A 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 18 21128018 21128018 T C NPC1 Missense_Mutation p.Y570C 0.18 deleterious(0.02) benign(0.019) TCGA-XK-AAIW-01 18 21396450 21396450 C T LAMA3 Missense_Mutation p.R716W 0.53 benign(0.004) TCGA-XK-AAIW-01 18 21402284 21402284 C T LAMA3 Silent p.Y791Y 0.35 TCGA-XK-AAIW-01 18 21501508 21501508 C T LAMA3 Silent p.S2712S 0.29 TCGA-XK-AAIW-01 18 21946890 21946890 G A OSBPL1A Missense_Mutation p.T83M 0.43 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 18 22028078 22028078 G T IMPACT Missense_Mutation p.Q230H 0.45 tolerated(0.26) benign(0.008) TCGA-XK-AAIW-01 18 22040736 22040736 G A HRH4 Missense_Mutation p.R15H 0.36 tolerated(0.22) benign(0.001) TCGA-XK-AAIW-01 18 22804681 22804681 G A ZNF521 Silent p.C1067C 0.38 TCGA-XK-AAIW-01 18 23970027 23970027 C T TAF4B 3'UTR 0.23 TCGA-XK-AAIW-01 18 24035721 24035721 C T KCTD1 Missense_Mutation p.E254K 0.35 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-XK-AAIW-01 18 2544202 2544202 G A METTL4 Missense_Mutation p.P422L 0.49 deleterious(0.02) possibly_damaging(0.655) TCGA-XK-AAIW-01 18 28602420 28602420 G A DSC3 Missense_Mutation p.T275I 0.43 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 18 28714037 28714037 G A DSC1 Missense_Mutation p.P645S 0.43 deleterious(0.02) possibly_damaging(0.886) TCGA-XK-AAIW-01 18 2892105 2892105 G T EMILIN2 Missense_Mutation p.Q660H 0.41 tolerated(0.23) possibly_damaging(0.45) TCGA-XK-AAIW-01 18 28986322 28986322 T A DSG4 Missense_Mutation p.I640N 0.40 deleterious(0.01) benign(0.15) TCGA-XK-AAIW-01 18 28993158 28993158 C T DSG4 Missense_Mutation p.T927I 0.39 deleterious(0) probably_damaging(0.956) TCGA-XK-AAIW-01 18 29126255 29126255 C A DSG2 Missense_Mutation p.A969D 0.42 deleterious(0) probably_damaging(0.92) TCGA-XK-AAIW-01 18 29206246 29206246 C T B4GALT6 Missense_Mutation p.R334Q 0.29 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 18 29488331 29488331 T - TRAPPC8 Frame_Shift_Del p.K391Nfs*16 0.23 TCGA-XK-AAIW-01 18 29850314 29850314 T C GAREM Silent p.P533P 0.32 TCGA-XK-AAIW-01 18 29867951 29867951 G A GAREM Silent p.H203H 0.30 TCGA-XK-AAIW-01 18 30093505 30093505 G A WBP11P1 RNA 0.32 TCGA-XK-AAIW-01 18 31537346 31537346 G A NOL4 Missense_Mutation p.R458C 0.36 deleterious(0) possibly_damaging(0.781) TCGA-XK-AAIW-01 18 32400839 32400839 C T DTNA Missense_Mutation p.P321S 0.41 deleterious(0.02) possibly_damaging(0.779) TCGA-XK-AAIW-01 18 32844160 32844160 G A ZSCAN30 Nonsense_Mutation p.Q53* 0.18 TCGA-XK-AAIW-01 18 33607203 33607203 C A RPRD1A Missense_Mutation p.R186M 0.19 deleterious(0) probably_damaging(0.91) TCGA-XK-AAIW-01 18 33779931 33779931 G A MOCOS Silent p.P195P 0.26 TCGA-XK-AAIW-01 18 34320769 34320769 G A FHOD3 Missense_Mutation p.A1068T 0.08 deleterious(0) possibly_damaging(0.671) TCGA-XK-AAIW-01 18 34752975 34752975 C A KIAA1328 Missense_Mutation p.P485H 0.49 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 18 3879237 3879237 C T DLGAP1 Missense_Mutation p.A278T 0.29 deleterious(0.04) benign(0.079) TCGA-XK-AAIW-01 18 42531860 42531860 C T SETBP1 Missense_Mutation p.T852M 0.57 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 18 42643076 42643076 C T SETBP1 Missense_Mutation p.R1402W 0.12 deleterious(0) possibly_damaging(0.606) TCGA-XK-AAIW-01 18 43221187 43221187 C A SLC14A2 Silent p.A335A 0.40 TCGA-XK-AAIW-01 18 43253660 43253660 C T SLC14A2 Missense_Mutation p.A797V 0.32 deleterious(0.01) benign(0.063) TCGA-XK-AAIW-01 18 43319589 43319589 C T SLC14A1 Missense_Mutation p.A359V 0.33 tolerated(0.38) benign(0.107) TCGA-XK-AAIW-01 18 43422222 43422222 C T SIGLEC15 3'UTR 0.58 TCGA-XK-AAIW-01 18 43479517 43479517 C T EPG5 Missense_Mutation p.R1554Q 0.33 tolerated(0.13) probably_damaging(0.947) TCGA-XK-AAIW-01 18 43484051 43484051 C T EPG5 Missense_Mutation p.R1454H 0.36 tolerated(0.07) probably_damaging(0.984) TCGA-XK-AAIW-01 18 43685173 43685174 - A HAUS1 Frame_Shift_Ins p.I18Nfs*11 0.34 TCGA-XK-AAIW-01 18 43698194 43698194 G A HAUS1 Missense_Mutation p.A85T 0.42 tolerated(0.44) benign(0.016) TCGA-XK-AAIW-01 18 43796461 43796461 T C C18orf25 Silent p.S205S 0.43 TCGA-XK-AAIW-01 18 43843064 43843064 C T C18orf25 Missense_Mutation p.R399C 0.44 possibly_damaging(0.885) TCGA-XK-AAIW-01 18 44013447 44013447 G A RNF165 Missense_Mutation p.R119H 0.35 tolerated(0.07) possibly_damaging(0.791) TCGA-XK-AAIW-01 18 44260279 44260279 G A ST8SIA5 Missense_Mutation p.S286L 0.52 possibly_damaging(0.625) TCGA-XK-AAIW-01 18 44260380 44260380 C T ST8SIA5 Silent p.T252T 0.19 TCGA-XK-AAIW-01 18 44559587 44559587 G A TCEB3B Silent p.H683H 0.50 TCGA-XK-AAIW-01 18 45567115 45567115 C T ZBTB7C Missense_Mutation p.V122M 0.17 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 18 46447865 46447865 C T SMAD7 Missense_Mutation p.M386I 0.30 tolerated(0.19) benign(0.055) TCGA-XK-AAIW-01 18 46784852 46784853 - T DYM Frame_Shift_Ins p.N421Kfs*12 0.26 TCGA-XK-AAIW-01 18 47093932 47093932 G A LIPG Missense_Mutation p.A134T 0.41 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 18 47107896 47107896 G A LIPG Missense_Mutation p.R302H 0.34 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 18 47363955 47363955 G A MYO5B Silent p.N1690N 0.26 TCGA-XK-AAIW-01 18 47404230 47404230 T C MYO5B Missense_Mutation p.N1100S 0.36 tolerated(0.25) possibly_damaging(0.624) TCGA-XK-AAIW-01 18 47431149 47431149 G A MYO5B Missense_Mutation p.H822Y 0.39 tolerated(1) benign(0) TCGA-XK-AAIW-01 18 47753783 47753783 G A CCDC11 Missense_Mutation p.R505C 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 18 47812603 47812603 C T CXXC1 Missense_Mutation p.R83H 0.38 deleterious(0.01) possibly_damaging(0.487) TCGA-XK-AAIW-01 18 48335698 48335698 T C MRO Intron 0.17 TCGA-XK-AAIW-01 18 48439250 48439250 A G ME2 Missense_Mutation p.M108V 0.37 deleterious(0) benign(0.339) TCGA-XK-AAIW-01 18 48513361 48513361 C T ELAC1 Missense_Mutation p.A333V 0.39 tolerated(0.33) benign(0) TCGA-XK-AAIW-01 18 48591850 48591850 C T SMAD4 Missense_Mutation p.T338I 0.19 tolerated(0.23) benign(0.076) TCGA-XK-AAIW-01 18 48603092 48603092 G A SMAD4 Missense_Mutation p.V465M 0.48 deleterious(0.01) probably_damaging(0.935) TCGA-XK-AAIW-01 18 50832039 50832039 G A DCC Missense_Mutation p.R668K 0.19 tolerated(0.44) benign(0.143) TCGA-XK-AAIW-01 18 52899844 52899844 G A TCF4 Silent p.S617S 0.33 TCGA-XK-AAIW-01 18 5397140 5397140 C T EPB41L3 Missense_Mutation p.A920T 0.41 tolerated(0.06) benign(0.008) TCGA-XK-AAIW-01 18 5428401 5428401 G A EPB41L3 Missense_Mutation p.R326W 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 18 54398626 54398626 G A WDR7 Missense_Mutation p.R596H 0.22 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 18 5489101 5489101 G A EPB41L3 Missense_Mutation p.R28C 0.48 deleterious(0.05) benign(0.208) TCGA-XK-AAIW-01 18 55020209 55020209 C T ST8SIA3 Silent p.Y44Y 0.43 TCGA-XK-AAIW-01 18 55329795 55329795 C T ATP8B1 Missense_Mutation p.A780T 0.10 tolerated(0.59) benign(0.002) TCGA-XK-AAIW-01 18 56247545 56247545 G A ALPK2 Missense_Mutation p.P155S 0.41 tolerated(0.87) benign(0.001) TCGA-XK-AAIW-01 18 56274580 56274580 C A ALPK2 Missense_Mutation p.Q67H 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 18 56648724 56648724 A G ZNF532 Missense_Mutation p.T1096A 0.06 tolerated(0.24) benign(0.146) TCGA-XK-AAIW-01 18 57105347 57105347 G T CCBE1 Missense_Mutation p.S328Y 0.32 deleterious(0.01) possibly_damaging(0.87) TCGA-XK-AAIW-01 18 57570089 57570089 T C PMAIP1 3'UTR 0.30 TCGA-XK-AAIW-01 18 59212279 59212279 C T CDH20 Missense_Mutation p.A517V 0.51 tolerated(0.17) probably_damaging(0.999) TCGA-XK-AAIW-01 18 5956310 5956310 G A L3MBTL4 Missense_Mutation p.A594V 0.13 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 18 59713067 59713067 G A PIGN 3'UTR 0.56 TCGA-XK-AAIW-01 18 59898499 59898499 C T KIAA1468 Silent p.Y507Y 0.09 TCGA-XK-AAIW-01 18 60021739 60021739 C T TNFRSF11A Silent p.C133C 0.43 TCGA-XK-AAIW-01 18 60241838 60241838 G A ZCCHC2 Missense_Mutation p.A842T 0.69 deleterious(0.04) benign(0.013) TCGA-XK-AAIW-01 18 60242433 60242433 G A ZCCHC2 Missense_Mutation p.G1040E 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 18 60646384 60646384 G A PHLPP1 Missense_Mutation p.G1625D 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 18 61170612 61170612 G A SERPINB5 Missense_Mutation p.S262N 0.29 tolerated(0.1) probably_damaging(0.928) TCGA-XK-AAIW-01 18 61255918 61255918 C T SERPINB13 Missense_Mutation p.A6V 0.37 tolerated(0.24) benign(0.025) TCGA-XK-AAIW-01 18 64212131 64212131 C T CDH19 Missense_Mutation p.R262H 0.23 tolerated(0.41) benign(0.391) TCGA-XK-AAIW-01 18 65178558 65178558 C G DSEL Silent p.V1106V 0.09 TCGA-XK-AAIW-01 18 65181514 65181514 G A DSEL Missense_Mutation p.A121V 0.48 tolerated(0.24) benign(0.009) TCGA-XK-AAIW-01 18 673110 673110 C T TYMS 3'UTR 0.21 TCGA-XK-AAIW-01 18 67531530 67531530 C T CD226 3'UTR 0.25 TCGA-XK-AAIW-01 18 67562982 67562982 C T CD226 Missense_Mutation p.A228T 0.38 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 18 683281 683281 G A ENOSF1 Missense_Mutation p.P302S 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 18 6896557 6896557 C A ARHGAP28 Silent p.S495S 0.42 TCGA-XK-AAIW-01 18 6985305 6985305 G A LAMA1 Missense_Mutation p.A1864V 0.17 tolerated(0.31) benign(0.033) TCGA-XK-AAIW-01 18 7023302 7023302 G A LAMA1 Silent p.N854N 0.42 TCGA-XK-AAIW-01 18 70450987 70450987 C T NETO1 Missense_Mutation p.G265E 0.30 tolerated(0.11) probably_damaging(0.967) TCGA-XK-AAIW-01 18 72178055 72178055 C A CNDP2 Missense_Mutation p.P155H 0.24 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 18 72179721 72179721 C T CNDP2 Silent p.Y232Y 0.41 TCGA-XK-AAIW-01 18 7231883 7231883 C T LRRC30 Silent p.S249S 0.51 TCGA-XK-AAIW-01 18 72344288 72344288 G A ZNF407 Missense_Mutation p.G438D 0.22 tolerated(0.07) benign(0.346) TCGA-XK-AAIW-01 18 72345307 72345307 G A ZNF407 Missense_Mutation p.V778I 0.38 tolerated(0.06) benign(0.123) TCGA-XK-AAIW-01 18 72346077 72346077 G A ZNF407 Silent p.L1034L 0.25 TCGA-XK-AAIW-01 18 72775125 72775125 C T ZNF407 Silent p.Y1816Y 0.35 TCGA-XK-AAIW-01 18 72776060 72776060 C T ZNF407 Missense_Mutation p.A2128V 0.38 tolerated(0.12) benign(0.413) TCGA-XK-AAIW-01 18 72998132 72998132 C T TSHZ1 Missense_Mutation p.T212M 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 18 72998426 72998426 C T TSHZ1 Missense_Mutation p.A310V 0.32 tolerated(0.45) benign(0.211) TCGA-XK-AAIW-01 18 74091238 74091238 C T ZNF516 Silent p.S944S 0.30 TCGA-XK-AAIW-01 18 74091286 74091286 G A ZNF516 Silent p.S928S 0.56 TCGA-XK-AAIW-01 18 74153283 74153283 G A ZNF516 Silent p.A576A 0.34 TCGA-XK-AAIW-01 18 74640018 74640018 C T ZNF236 Missense_Mutation p.T1515M 0.42 deleterious(0.03) benign(0.232) TCGA-XK-AAIW-01 18 74672658 74672658 C T ZNF236 Missense_Mutation p.L1754F 0.39 tolerated(0.35) probably_damaging(0.945) TCGA-XK-AAIW-01 18 756827 756827 T C YES1 Translation_Start_Site p.M1? 0.32 deleterious(0) probably_damaging(0.937) TCGA-XK-AAIW-01 18 76753098 76753098 C T SALL3 Silent p.S369S 0.38 TCGA-XK-AAIW-01 18 76754985 76754985 C T SALL3 Silent p.S998S 0.47 TCGA-XK-AAIW-01 18 77193714 77193714 G A NFATC1 Silent p.S441S 0.12 TCGA-XK-AAIW-01 18 77513794 77513794 C T CTDP1 3'UTR 0.31 TCGA-XK-AAIW-01 18 77659290 77659290 C T KCNG2 Missense_Mutation p.A292V 0.23 tolerated(0.06) probably_damaging(0.933) TCGA-XK-AAIW-01 18 8387204 8387204 C T PTPRM Silent p.G1393G 0.55 TCGA-XK-AAIW-01 18 8718444 8718444 C T SOGA2 5'UTR 0.39 TCGA-XK-AAIW-01 18 8784384 8784384 C T SOGA2 Missense_Mutation p.T425M 0.41 deleterious(0.04) probably_damaging(0.986) TCGA-XK-AAIW-01 18 8825585 8825585 G A SOGA2 Silent p.S1359S 0.45 TCGA-XK-AAIW-01 18 9255853 9255853 G A ANKRD12 Missense_Mutation p.C863Y 0.38 deleterious_low_confidence(0.03) benign(0.304) TCGA-XK-AAIW-01 18 9281097 9281097 C T ANKRD12 Silent p.N2054N 0.40 TCGA-XK-AAIW-01 18 9559585 9559585 C T PPP4R1 Silent p.A620A 0.45 TCGA-XK-AAIW-01 18 9583125 9583125 G T PPP4R1 Missense_Mutation p.P303H 0.30 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 18 9588808 9588808 G A PPP4R1 Silent p.I113I 0.48 TCGA-XK-AAIW-01 18 9887552 9887552 T C TXNDC2 Missense_Mutation p.I359T 0.35 tolerated(1) benign(0.041) TCGA-XK-AAIW-01 19 10091514 10091515 - C COL5A3 Frame_Shift_Ins p.Q843Afs*49 0.30 TCGA-XK-AAIW-01 19 10097008 10097008 C A COL5A3 Missense_Mutation p.G779C 0.42 unknown(0) TCGA-XK-AAIW-01 19 10200616 10200616 C T C19orf66 Missense_Mutation p.R93C 0.33 deleterious(0) possibly_damaging(0.561) TCGA-XK-AAIW-01 19 10220804 10220804 C T PPAN Missense_Mutation p.A235V 0.34 tolerated(0.05) possibly_damaging(0.614) TCGA-XK-AAIW-01 19 10221710 10221710 C A PPAN Intron 0.19 TCGA-XK-AAIW-01 19 10291513 10291513 C A DNMT1 Nonsense_Mutation p.E56* 0.13 TCGA-XK-AAIW-01 19 10334659 10334659 G A S1PR2 Missense_Mutation p.P308L 0.47 tolerated(0.29) benign(0.005) TCGA-XK-AAIW-01 19 10334881 10334881 G A S1PR2 Missense_Mutation p.T234M 0.17 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 19 10369391 10369391 C T MRPL4 Intron 0.27 TCGA-XK-AAIW-01 19 1042344 1042344 T C ABCA7 Missense_Mutation p.L149P 0.14 tolerated(0.27) benign(0.087) TCGA-XK-AAIW-01 19 1046292 1046292 C T ABCA7 Silent p.F503F 0.40 TCGA-XK-AAIW-01 19 10468707 10468707 G A TYK2 Silent p.G761G 0.35 TCGA-XK-AAIW-01 19 10478977 10478977 C T TYK2 Missense_Mutation p.R104H 0.46 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 19 10505948 10505948 C A CDC37 Missense_Mutation p.A187S 0.06 deleterious(0) probably_damaging(0.971) TCGA-XK-AAIW-01 19 10506866 10506866 C T CDC37 Missense_Mutation p.R39H 0.35 deleterious(0) probably_damaging(0.944) TCGA-XK-AAIW-01 19 1057328 1057328 C T ABCA7 Missense_Mutation p.P1594S 0.36 tolerated(0.65) benign(0.04) TCGA-XK-AAIW-01 19 10578164 10578164 C T PDE4A Missense_Mutation p.A843V 0.53 deleterious_low_confidence(0.03) benign(0.081) TCGA-XK-AAIW-01 19 10610427 10610427 C T KEAP1 Missense_Mutation p.A95T 0.38 tolerated(0.05) probably_damaging(0.951) TCGA-XK-AAIW-01 19 10668529 10668529 G A KRI1 Missense_Mutation p.R474C 0.42 tolerated(0.2) benign(0.003) TCGA-XK-AAIW-01 19 10670333 10670333 G A KRI1 Missense_Mutation p.R333C 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-XK-AAIW-01 19 1074184 1074184 A G HMHA1 Missense_Mutation p.N307S 0.59 tolerated(0.5) benign(0.012) TCGA-XK-AAIW-01 19 10742304 10742304 G A SLC44A2 Missense_Mutation p.A169T 0.40 tolerated(0.12) benign(0.004) TCGA-XK-AAIW-01 19 10789860 10789860 C T ILF3 Nonsense_Mutation p.R247* 0.45 TCGA-XK-AAIW-01 19 10791067 10791067 C T ILF3 Missense_Mutation p.A302V 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-XK-AAIW-01 19 10823503 10823503 G A QTRT1 Missense_Mutation p.G311S 0.42 tolerated(0.5) benign(0.001) TCGA-XK-AAIW-01 19 10916630 10916630 C T DNM2 Missense_Mutation p.A511V 0.43 tolerated(0.15) benign(0.005) TCGA-XK-AAIW-01 19 11024683 11024683 G A CARM1 Missense_Mutation p.R267H 0.50 deleterious(0) probably_damaging(0.945) TCGA-XK-AAIW-01 19 11031734 11031734 A G CARM1 Missense_Mutation p.T516A 0.28 tolerated_low_confidence(0.37) benign(0.001) TCGA-XK-AAIW-01 19 11118668 11118668 G A SMARCA4 Missense_Mutation p.V698I 0.35 benign(0.21) TCGA-XK-AAIW-01 19 11123674 11123674 G A SMARCA4 Missense_Mutation p.G775D 0.31 probably_damaging(1) TCGA-XK-AAIW-01 19 11304609 11304609 G A KANK2 Silent p.Y49Y 0.46 TCGA-XK-AAIW-01 19 11325274 11325274 G A DOCK6 Silent p.T1386T 0.20 TCGA-XK-AAIW-01 19 11361693 11361693 C T DOCK6 Missense_Mutation p.D193N 0.16 tolerated(0.1) benign(0.094) TCGA-XK-AAIW-01 19 11470258 11470258 G A DKFZP761J1410 Intron 0.46 TCGA-XK-AAIW-01 19 11471980 11471980 C T DKFZP761J1410 Missense_Mutation p.S135F 0.33 deleterious(0) probably_damaging(0.947) TCGA-XK-AAIW-01 19 11472018 11472018 C T DKFZP761J1410 Missense_Mutation p.P148S 0.23 tolerated(0.23) benign(0.032) TCGA-XK-AAIW-01 19 11474850 11474850 G A DKFZP761J1410 Missense_Mutation p.C301Y 0.32 tolerated(1) benign(0.093) TCGA-XK-AAIW-01 19 11527598 11527598 C T RGL3 Missense_Mutation p.A95T 0.20 tolerated(0.17) benign(0.403) TCGA-XK-AAIW-01 19 11527672 11527672 C A RGL3 Missense_Mutation p.R70M 0.27 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 11560163 11560163 C T PRKCSH Missense_Mutation p.T508M 0.35 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 19 11565665 11565665 C T ELAVL3 Silent p.S260S 0.34 TCGA-XK-AAIW-01 19 11649687 11649687 G A CNN1 5'UTR 0.33 TCGA-XK-AAIW-01 19 11664579 11664579 G A ELOF1 Silent p.C78C 0.33 TCGA-XK-AAIW-01 19 11762620 11762620 C T ZNF833P RNA 0.19 TCGA-XK-AAIW-01 19 11793385 11793385 G A ZNF833P RNA 0.38 TCGA-XK-AAIW-01 19 11796424 11796424 G T ZNF833P RNA 0.38 TCGA-XK-AAIW-01 19 11942387 11942387 G T ZNF440 Missense_Mutation p.K132N 0.40 deleterious(0.01) probably_damaging(0.919) TCGA-XK-AAIW-01 19 12061114 12061114 C T ZNF700 3'UTR 0.47 TCGA-XK-AAIW-01 19 12089533 12089533 T C ZNF763 Missense_Mutation p.F268S 0.40 deleterious(0) probably_damaging(0.922) TCGA-XK-AAIW-01 19 12089672 12089672 C A ZNF763 Silent p.P314P 0.31 TCGA-XK-AAIW-01 19 12222245 12222245 C T ZNF788 5'UTR 0.39 TCGA-XK-AAIW-01 19 1226491 1226491 C T STK11 Missense_Mutation p.R383C 0.24 deleterious_low_confidence(0.03) benign(0.163) TCGA-XK-AAIW-01 19 12384448 12384448 A - ZNF44 Frame_Shift_Del p.W256Gfs*34 0.37 TCGA-XK-AAIW-01 19 12738675 12738675 G A ZNF791 Missense_Mutation p.R111H 0.34 tolerated(0.9) benign(0.333) TCGA-XK-AAIW-01 19 12772078 12772078 G A MAN2B1 Missense_Mutation p.A341V 0.45 deleterious(0.02) benign(0.184) TCGA-XK-AAIW-01 19 12786735 12786735 C T DHPS Missense_Mutation p.A343T 0.26 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 19 12856477 12856477 C T ASNA1 Silent p.G171G 0.67 TCGA-XK-AAIW-01 19 12875650 12875650 C T HOOK2 Missense_Mutation p.R602H 0.31 deleterious(0.04) benign(0.013) TCGA-XK-AAIW-01 19 12924293 12924293 C T RNASEH2A 3'UTR 0.24 TCGA-XK-AAIW-01 19 1295701 1295701 G A EFNA2 Missense_Mutation p.A100T 0.35 tolerated(0.39) benign(0.051) TCGA-XK-AAIW-01 19 12969611 12969611 C T MAST1 Intron 0.47 TCGA-XK-AAIW-01 19 12975905 12975905 C T MAST1 Silent p.G517G 0.36 TCGA-XK-AAIW-01 19 12979924 12979924 C T MAST1 Nonsense_Mutation p.R940* 0.29 TCGA-XK-AAIW-01 19 12985242 12985242 G A MAST1 Missense_Mutation p.S1424N 0.46 deleterious_low_confidence(0.03) benign(0.029) TCGA-XK-AAIW-01 19 12996949 12996949 C T KLF1 Missense_Mutation p.R32H 0.52 tolerated(0.07) benign(0.003) TCGA-XK-AAIW-01 19 13007110 13007110 C T GCDH Missense_Mutation p.R243W 0.26 deleterious_low_confidence(0) benign(0.001) TCGA-XK-AAIW-01 19 13008631 13008631 C T GCDH Silent p.H399H 0.38 TCGA-XK-AAIW-01 19 13065212 13065212 G A GADD45GIP1 Missense_Mutation p.A160V 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-XK-AAIW-01 19 13080429 13080429 C T DAND5 5'UTR 0.40 TCGA-XK-AAIW-01 19 13211556 13211556 G A LYL1 Silent p.Y114Y 0.52 TCGA-XK-AAIW-01 19 13246945 13246945 C T NACC1 Silent p.S308S 0.38 TCGA-XK-AAIW-01 19 13249036 13249036 C T NACC1 Missense_Mutation p.A467V 0.36 tolerated(0.06) benign(0.302) TCGA-XK-AAIW-01 19 13256153 13256153 G A STX10 Silent p.S140S 0.41 TCGA-XK-AAIW-01 19 13346502 13346502 C T CACNA1A Missense_Mutation p.A1665T 0.28 benign(0.002) TCGA-XK-AAIW-01 19 13372388 13372388 C T CACNA1A Missense_Mutation p.V1376I 0.23 possibly_damaging(0.636) TCGA-XK-AAIW-01 19 13869945 13869945 C T CCDC130 Silent p.D144D 0.20 TCGA-XK-AAIW-01 19 13873818 13873818 C T CCDC130 Missense_Mutation p.T376M 0.52 tolerated(0.14) benign(0.035) TCGA-XK-AAIW-01 19 13910576 13910576 C T ZSWIM4 Missense_Mutation p.R66C 0.35 deleterious(0) probably_damaging(0.942) TCGA-XK-AAIW-01 19 13923941 13923941 C T ZSWIM4 Silent p.D381D 0.24 TCGA-XK-AAIW-01 19 13936507 13936507 G A ZSWIM4 Missense_Mutation p.A670T 0.38 deleterious(0.02) unknown(0) TCGA-XK-AAIW-01 19 13941491 13941491 T C ZSWIM4 Missense_Mutation p.V866A 0.39 deleterious(0) unknown(0) TCGA-XK-AAIW-01 19 14030737 14030737 G T CC2D1A Missense_Mutation p.E443D 0.45 tolerated(0.28) benign(0.005) TCGA-XK-AAIW-01 19 14031458 14031458 C T CC2D1A Missense_Mutation p.P482L 0.44 tolerated(0.14) benign(0.01) TCGA-XK-AAIW-01 19 14037354 14037354 C T CC2D1A Silent p.N655N 0.26 TCGA-XK-AAIW-01 19 14070278 14070278 G A DCAF15 Silent p.T402T 0.31 TCGA-XK-AAIW-01 19 14070696 14070696 G A DCAF15 Missense_Mutation p.V477I 0.25 deleterious(0.02) possibly_damaging(0.583) TCGA-XK-AAIW-01 19 14071845 14071845 C T DCAF15 3'UTR 0.38 TCGA-XK-AAIW-01 19 14199227 14199227 G A SAMD1 3'UTR 0.46 TCGA-XK-AAIW-01 19 14208433 14208433 G A PRKACA Silent p.C200C 0.32 TCGA-XK-AAIW-01 19 14267883 14267883 G A LPHN1 Silent p.G945G 0.33 TCGA-XK-AAIW-01 19 14270291 14270291 C T LPHN1 Missense_Mutation p.V654I 0.33 tolerated(0.13) benign(0.009) TCGA-XK-AAIW-01 19 14574936 14574936 C T PKN1 Missense_Mutation p.R574W 0.32 deleterious(0.02) benign(0.02) TCGA-XK-AAIW-01 19 1461079 1461079 T C APC2 Missense_Mutation p.I522T 0.35 possibly_damaging(0.576) TCGA-XK-AAIW-01 19 1462106 1462106 G A APC2 Missense_Mutation p.A595T 0.49 probably_damaging(0.935) TCGA-XK-AAIW-01 19 14876577 14876577 C T EMR2 Missense_Mutation p.S225N 0.23 tolerated(1) benign(0) TCGA-XK-AAIW-01 19 15222568 15222568 C T SYDE1 Nonsense_Mutation p.R515* 0.35 TCGA-XK-AAIW-01 19 15234345 15234345 C T ILVBL Missense_Mutation p.A60T 0.17 tolerated(0.52) benign(0.147) TCGA-XK-AAIW-01 19 15342604 15342604 G A EPHX3 Silent p.H104H 0.31 TCGA-XK-AAIW-01 19 15512317 15512317 C T AKAP8L Missense_Mutation p.E154K 0.37 tolerated(0.15) benign(0.108) TCGA-XK-AAIW-01 19 15640580 15640580 G A CYP4F22 Missense_Mutation p.V95I 0.38 tolerated(0.52) benign(0.01) TCGA-XK-AAIW-01 19 15662225 15662225 A T CYP4F22 Silent p.I513I 0.36 TCGA-XK-AAIW-01 19 15739226 15739226 C T CYP4F8 RNA 0.19 TCGA-XK-AAIW-01 19 15760047 15760047 C T CYP4F3 Silent p.D201D 0.41 TCGA-XK-AAIW-01 19 1584643 1584643 G A MBD3 Missense_Mutation p.R102C 0.34 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 19 16024574 16024574 G A CYP4F11 Missense_Mutation p.R515W 0.20 tolerated(0.06) benign(0.149) TCGA-XK-AAIW-01 19 1612209 1612209 G A TCF3 Intron 0.44 TCGA-XK-AAIW-01 19 1615322 1615322 G A TCF3 Missense_Mutation p.A595V 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 16338437 16338437 G A AP1M1 Missense_Mutation p.R263H 0.47 deleterious(0.01) benign(0.344) TCGA-XK-AAIW-01 19 16345076 16345076 C T AP1M1 Nonsense_Mutation p.Q426* 0.63 TCGA-XK-AAIW-01 19 16514562 16514562 C T EPS15L1 Silent p.T536T 0.36 TCGA-XK-AAIW-01 19 16630047 16630047 C T CHERP Missense_Mutation p.D892N 0.47 deleterious(0) unknown(0) TCGA-XK-AAIW-01 19 16677423 16677423 G A SLC35E1 Silent p.L226L 0.32 TCGA-XK-AAIW-01 19 16687031 16687031 G A MED26 Missense_Mutation p.P537L 0.52 tolerated(0.22) benign(0.282) TCGA-XK-AAIW-01 19 16687136 16687136 G A MED26 Missense_Mutation p.A502V 0.50 tolerated(0.92) benign(0.007) TCGA-XK-AAIW-01 19 16687166 16687166 C T MED26 Missense_Mutation p.R492Q 0.36 tolerated(0.37) benign(0.014) TCGA-XK-AAIW-01 19 16908688 16908688 G A NWD1 Silent p.A1150A 0.37 TCGA-XK-AAIW-01 19 16918719 16918719 C T NWD1 Silent p.S1353S 0.35 TCGA-XK-AAIW-01 19 16918888 16918888 G A NWD1 Missense_Mutation p.A1410T 0.36 tolerated(0.1) benign(0.012) TCGA-XK-AAIW-01 19 17007014 17007014 G T CPAMD8 Missense_Mutation p.P1847H 0.33 tolerated_low_confidence(0.17) benign(0.267) TCGA-XK-AAIW-01 19 17104395 17104395 A G CPAMD8 Missense_Mutation p.V413A 0.15 deleterious(0) possibly_damaging(0.534) TCGA-XK-AAIW-01 19 17212765 17212765 G A MYO9B Missense_Mutation p.A80T 0.21 tolerated(0.06) benign(0.06) TCGA-XK-AAIW-01 19 17329200 17329200 C T USE1 Missense_Mutation p.T141I 0.46 tolerated(0.3) benign(0.003) TCGA-XK-AAIW-01 19 17329244 17329244 G A USE1 Intron 0.25 TCGA-XK-AAIW-01 19 17343236 17343236 C T NR2F6 Silent p.T380T 0.13 TCGA-XK-AAIW-01 19 17533145 17533145 C A MVB12A Silent p.A97A 0.46 TCGA-XK-AAIW-01 19 17599665 17599665 G A SLC27A1 Missense_Mutation p.R268H 0.29 tolerated(0.53) possibly_damaging(0.671) TCGA-XK-AAIW-01 19 17611139 17611139 G A SLC27A1 Missense_Mutation p.R420Q 0.42 tolerated(0.14) benign(0.016) TCGA-XK-AAIW-01 19 17671207 17671207 A G COLGALT1 Missense_Mutation p.E141G 0.45 tolerated(0.08) benign(0.02) TCGA-XK-AAIW-01 19 17838376 17838376 G A MAP1S Missense_Mutation p.R728H 0.25 tolerated(0.05) probably_damaging(0.966) TCGA-XK-AAIW-01 19 17877525 17877525 T C FCHO1 Missense_Mutation p.L81P 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 17893965 17893965 G A FCHO1 Missense_Mutation p.A693T 0.32 tolerated(0.19) benign(0.007) TCGA-XK-AAIW-01 19 17918795 17918795 C T B3GNT3 Missense_Mutation p.P60L 0.67 tolerated(0.06) benign(0.267) TCGA-XK-AAIW-01 19 17918927 17918927 C T B3GNT3 Missense_Mutation p.A104V 0.30 tolerated(0.17) benign(0.026) TCGA-XK-AAIW-01 19 17946739 17946739 G A JAK3 Silent p.N636N 0.32 TCGA-XK-AAIW-01 19 1797000 1797000 C T ATP8B3 Silent p.P519P 0.43 TCGA-XK-AAIW-01 19 17973016 17973016 C T RPL18A Silent p.G104G 0.13 TCGA-XK-AAIW-01 19 17988624 17988624 C T SLC5A5 Missense_Mutation p.A264V 0.29 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 19 18092574 18092574 C T KCNN1 Silent p.R185R 0.30 TCGA-XK-AAIW-01 19 1816553 1816553 C T REXO1 Silent p.T1111T 0.32 TCGA-XK-AAIW-01 19 18193064 18193064 C T IL12RB1 Silent p.S45S 0.25 TCGA-XK-AAIW-01 19 18254660 18254660 C T MAST3 Silent p.T780T 0.44 TCGA-XK-AAIW-01 19 18260483 18260483 G A MAST3 Missense_Mutation p.V1293M 0.33 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-XK-AAIW-01 19 18313528 18313528 C T RAB3A Missense_Mutation p.R8H 0.18 deleterious_low_confidence(0.04) benign(0.003) TCGA-XK-AAIW-01 19 18367961 18367961 C T KIAA1683 3'UTR 0.31 TCGA-XK-AAIW-01 19 18375974 18375974 G A KIAA1683 Silent p.S792S 0.38 TCGA-XK-AAIW-01 19 18538785 18538785 A G SSBP4 Missense_Mutation p.Q91R 0.48 deleterious(0.01) possibly_damaging(0.89) TCGA-XK-AAIW-01 19 18545641 18545641 C T ISYNA1 3'UTR 0.27 TCGA-XK-AAIW-01 19 18709605 18709605 G A CRLF1 Silent p.N168N 0.31 TCGA-XK-AAIW-01 19 18778931 18778931 C T KLHL26 Missense_Mutation p.P242S 0.38 tolerated(0.74) benign(0.05) TCGA-XK-AAIW-01 19 18779107 18779107 G A KLHL26 Silent p.P300P 0.50 TCGA-XK-AAIW-01 19 18896317 18896317 G T COMP Missense_Mutation p.L570M 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 19 18964097 18964097 G A UPF1 Missense_Mutation p.R365Q 0.28 deleterious(0.02) benign(0.03) TCGA-XK-AAIW-01 19 18971713 18971713 C T UPF1 Silent p.I793I 0.35 TCGA-XK-AAIW-01 19 18976954 18976954 G A UPF1 Silent p.T1113T 0.20 TCGA-XK-AAIW-01 19 18980810 18980810 G A GDF1 Missense_Mutation p.R103C 0.45 deleterious(0) probably_damaging(0.965) TCGA-XK-AAIW-01 19 1913103 1913103 C T ADAT3 Missense_Mutation p.R353C 0.30 tolerated(0.09) benign(0.046) TCGA-XK-AAIW-01 19 19136509 19136509 T C SUGP2 Silent p.L216L 0.33 TCGA-XK-AAIW-01 19 19154809 19154809 C T ARMC6 Silent p.L69L 0.32 TCGA-XK-AAIW-01 19 19162543 19162543 C T ARMC6 Missense_Mutation p.A131V 0.38 deleterious(0) probably_damaging(0.969) TCGA-XK-AAIW-01 19 19162890 19162890 C T ARMC6 Missense_Mutation p.R247C 0.34 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 19221543 19221543 G A SLC25A42 Missense_Mutation p.R272H 0.47 tolerated(0.55) benign(0.003) TCGA-XK-AAIW-01 19 19231627 19231627 T C TMEM161A Missense_Mutation p.Y378C 0.27 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 19 19313664 19313664 G A NR2C2AP Missense_Mutation p.T22I 0.40 tolerated(0.17) benign(0.01) TCGA-XK-AAIW-01 19 19329842 19329842 G A NCAN Silent p.Q64Q 0.48 TCGA-XK-AAIW-01 19 19339180 19339180 G A NCAN Silent p.P917P 0.29 TCGA-XK-AAIW-01 19 19349134 19349134 C T NCAN Missense_Mutation p.A1108V 0.48 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 19 19371687 19371687 C T HAPLN4 Missense_Mutation p.R140H 0.11 deleterious(0.02) benign(0.156) TCGA-XK-AAIW-01 19 19371692 19371692 G A HAPLN4 Silent p.Y138Y 0.31 TCGA-XK-AAIW-01 19 19451659 19451659 C T MAU2 Silent p.L186L 0.33 TCGA-XK-AAIW-01 19 19454733 19454733 C T MAU2 Missense_Mutation p.A354V 0.21 tolerated(0.39) benign(0.268) TCGA-XK-AAIW-01 19 19609379 19609379 C T GATAD2A Missense_Mutation p.A351V 0.19 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 19 19625556 19625556 G A TSSK6 Silent p.G227G 0.14 TCGA-XK-AAIW-01 19 19625628 19625628 G A TSSK6 Silent p.Y203Y 0.46 TCGA-XK-AAIW-01 19 19626320 19626320 G A TSSK6 5'UTR 0.29 TCGA-XK-AAIW-01 19 19638886 19638886 C T NDUFA13 Missense_Mutation p.T129I 0.36 deleterious_low_confidence(0.01) benign(0.219) TCGA-XK-AAIW-01 19 19645851 19645851 G A YJEFN3 Silent p.P109P 0.12 TCGA-XK-AAIW-01 19 19648259 19648259 C T YJEFN3 Missense_Mutation p.P276S 0.56 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 19656215 19656215 G A CILP2 Missense_Mutation p.R954H 0.28 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 19744908 19744908 G A GMIP Missense_Mutation p.R726W 0.35 tolerated(0.1) benign(0.007) TCGA-XK-AAIW-01 19 19746242 19746242 G A GMIP Silent p.S514S 0.41 TCGA-XK-AAIW-01 19 19746265 19746265 C T GMIP Missense_Mutation p.E507K 0.33 deleterious(0) possibly_damaging(0.684) TCGA-XK-AAIW-01 19 19748817 19748817 G A GMIP Missense_Mutation p.A280V 0.58 tolerated(0.52) benign(0.001) TCGA-XK-AAIW-01 19 19762591 19762591 C A ATP13A1 Nonsense_Mutation p.G748* 0.32 TCGA-XK-AAIW-01 19 19790271 19790271 G A ZNF101 Missense_Mutation p.R158Q 0.49 tolerated(0.43) benign(0.004) TCGA-XK-AAIW-01 19 19790274 19790274 G A ZNF101 Missense_Mutation p.R159H 0.47 tolerated(1) benign(0) TCGA-XK-AAIW-01 19 1987589 1987589 C T BTBD2 Missense_Mutation p.R364H 0.20 deleterious(0.03) benign(0.363) TCGA-XK-AAIW-01 19 1990006 1990006 C T BTBD2 Missense_Mutation p.A329T 0.45 tolerated(0.69) benign(0.223) TCGA-XK-AAIW-01 19 19905509 19905509 G A ZNF506 Missense_Mutation p.P396L 0.39 deleterious(0.02) probably_damaging(0.985) TCGA-XK-AAIW-01 19 20308730 20308730 A G ZNF486 Missense_Mutation p.K404R 0.42 deleterious(0.04) probably_damaging(0.986) TCGA-XK-AAIW-01 19 2043567 2043567 C T MKNK2 Silent p.Q118Q 0.32 TCGA-XK-AAIW-01 19 20728021 20728021 T C ZNF737 Missense_Mutation p.T330A 0.11 tolerated(0.26) benign(0.003) TCGA-XK-AAIW-01 19 20728103 20728103 C T ZNF737 Silent p.A302A 0.33 TCGA-XK-AAIW-01 19 2073388 2073388 G A MOB3A 3'UTR 0.50 TCGA-XK-AAIW-01 19 2078368 2078368 G A MOB3A Silent p.H64H 0.37 TCGA-XK-AAIW-01 19 20829186 20829186 G A ZNF626 Missense_Mutation p.A10V 0.34 tolerated(0.07) probably_damaging(0.996) TCGA-XK-AAIW-01 19 21365724 21365725 - A ZNF431 Frame_Shift_Ins p.C209Mfs*15 0.25 TCGA-XK-AAIW-01 19 21719314 21719314 C A ZNF429 Silent p.V153V 0.45 TCGA-XK-AAIW-01 19 21720843 21720843 G A ZNF429 Missense_Mutation p.R663Q 0.27 tolerated_low_confidence(0.38) benign(0.012) TCGA-XK-AAIW-01 19 21990620 21990620 C T ZNF43 Missense_Mutation p.G740D 0.35 deleterious(0.04) benign(0.126) TCGA-XK-AAIW-01 19 2214517 2214517 G A DOT1L Silent p.S615S 0.57 TCGA-XK-AAIW-01 19 22154228 22154228 C T ZNF208 Missense_Mutation p.G1203D 0.31 deleterious(0.04) possibly_damaging(0.677) TCGA-XK-AAIW-01 19 22272129 22272129 G A ZNF257 Missense_Mutation p.R526H 0.39 tolerated(0.66) benign(0.008) TCGA-XK-AAIW-01 19 22780125 22780125 A G RN7SL860P 5'Flank 0.37 TCGA-XK-AAIW-01 19 2278607 2278607 G A C19orf35 Silent p.D196D 0.53 TCGA-XK-AAIW-01 19 22939742 22939742 A G ZNF99 3'Flank 0.37 TCGA-XK-AAIW-01 19 22940490 22940490 C A ZNF99 Missense_Mutation p.A741S 0.31 tolerated(0.15) probably_damaging(0.928) TCGA-XK-AAIW-01 19 2352991 2352991 G A LLfos-48D6.1 Intron 0.38 TCGA-XK-AAIW-01 19 23542635 23542635 G T ZNF91 Missense_Mutation p.P1049H 0.35 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 19 23836705 23836705 C T ZNF675 Missense_Mutation p.E344K 0.25 deleterious(0.05) probably_damaging(0.994) TCGA-XK-AAIW-01 19 2408424 2408424 G A TMPRSS9 Missense_Mutation p.V271M 0.36 deleterious(0.02) possibly_damaging(0.541) TCGA-XK-AAIW-01 19 2408468 2408468 C T TMPRSS9 Silent p.N285N 0.35 TCGA-XK-AAIW-01 19 2434012 2434012 C T LMNB2 Missense_Mutation p.G432S 0.46 tolerated(1) benign(0.025) TCGA-XK-AAIW-01 19 2434506 2434506 G A LMNB2 Missense_Mutation p.A330V 0.37 deleterious(0.03) benign(0.169) TCGA-XK-AAIW-01 19 2762503 2762503 C T SGTA Splice_Site p.X212_splice 0.38 TCGA-XK-AAIW-01 19 2762618 2762618 C T SGTA Silent p.K174K 0.41 TCGA-XK-AAIW-01 19 2767626 2767626 C T SGTA Silent p.A53A 0.29 TCGA-XK-AAIW-01 19 2768990 2768990 G A SGTA Missense_Mutation p.S26F 0.28 deleterious(0.01) possibly_damaging(0.681) TCGA-XK-AAIW-01 19 2807564 2807564 G A THOP1 Missense_Mutation p.M337I 0.38 tolerated(0.07) benign(0.199) TCGA-XK-AAIW-01 19 2853573 2853573 G A ZNF555 Missense_Mutation p.A504T 0.25 deleterious(0.04) benign(0.018) TCGA-XK-AAIW-01 19 2917987 2917987 C A ZNF57 Silent p.A456A 0.35 TCGA-XK-AAIW-01 19 2933602 2933602 C T ZNF77 Missense_Mutation p.R508H 0.39 tolerated(0.19) probably_damaging(0.928) TCGA-XK-AAIW-01 19 2933820 2933820 G T ZNF77 Silent p.P435P 0.23 TCGA-XK-AAIW-01 19 3006490 3006490 G A TLE2 Silent p.G476G 0.29 TCGA-XK-AAIW-01 19 30934839 30934839 G A ZNF536 Missense_Mutation p.A124T 0.33 tolerated(0.07) probably_damaging(0.995) TCGA-XK-AAIW-01 19 30935423 30935423 C T ZNF536 Silent p.H318H 0.28 TCGA-XK-AAIW-01 19 30935424 30935424 G A ZNF536 Missense_Mutation p.V319M 0.27 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 30936384 30936384 G A ZNF536 Missense_Mutation p.V639M 0.47 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 31039262 31039262 G A ZNF536 Silent p.V912V 0.47 TCGA-XK-AAIW-01 19 3119007 3119007 G A GNA11 Missense_Mutation p.A231T 0.38 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 19 31769229 31769229 C T TSHZ3 Silent p.K490K 0.33 TCGA-XK-AAIW-01 19 3192474 3192474 G A NCLN Missense_Mutation p.R64Q 0.30 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 19 32845370 32845370 C T ZNF507 Missense_Mutation p.S545L 0.30 tolerated(0.14) possibly_damaging(0.885) TCGA-XK-AAIW-01 19 32873927 32873927 G A ZNF507 Missense_Mutation p.E934K 0.09 deleterious(0) possibly_damaging(0.905) TCGA-XK-AAIW-01 19 32874049 32874049 C T ZNF507 3'UTR 0.38 TCGA-XK-AAIW-01 19 33089255 33089255 C A ANKRD27 Missense_Mutation p.Q983H 0.35 tolerated_low_confidence(0.07) benign(0.216) TCGA-XK-AAIW-01 19 33134217 33134217 G A ANKRD27 Silent p.Y227Y 0.39 TCGA-XK-AAIW-01 19 33135305 33135305 G A ANKRD27 Nonsense_Mutation p.R151* 0.20 TCGA-XK-AAIW-01 19 33137498 33137498 C T ANKRD27 Silent p.R79R 0.30 TCGA-XK-AAIW-01 19 33464132 33464132 C A C19orf40 Silent p.G10G 0.40 TCGA-XK-AAIW-01 19 33465049 33465049 G A C19orf40 Silent p.V109V 0.40 TCGA-XK-AAIW-01 19 33697049 33697049 G A LRP3 Missense_Mutation p.G458D 0.70 deleterious(0.04) probably_damaging(1) TCGA-XK-AAIW-01 19 33702165 33702165 C T SLC7A10 Missense_Mutation p.G328R 0.53 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 19 33870419 33870419 C T CEBPG Nonsense_Mutation p.Q92* 0.39 TCGA-XK-AAIW-01 19 34263822 34263822 C T CHST8 Missense_Mutation p.H377Y 0.30 deleterious(0) possibly_damaging(0.705) TCGA-XK-AAIW-01 19 34791425 34791425 G A KIAA0355 Missense_Mutation p.R16H 0.43 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-XK-AAIW-01 19 34818459 34818459 C T KIAA0355 Missense_Mutation p.A280V 0.30 deleterious(0.03) probably_damaging(0.971) TCGA-XK-AAIW-01 19 34818985 34818985 C T KIAA0355 Nonsense_Mutation p.Q345* 0.45 TCGA-XK-AAIW-01 19 3494035 3494035 G A DOHH Silent p.P114P 0.38 TCGA-XK-AAIW-01 19 34942995 34942995 G A UBA2 Silent p.E327E 0.35 TCGA-XK-AAIW-01 19 34984203 34984203 C T WTIP Silent p.S291S 0.19 TCGA-XK-AAIW-01 19 35175305 35175305 C T ZNF302 Silent p.C121C 0.45 TCGA-XK-AAIW-01 19 3526341 3526341 G A FZR1 Missense_Mutation p.R115H 0.30 deleterious(0.04) possibly_damaging(0.608) TCGA-XK-AAIW-01 19 3527745 3527745 C T FZR1 Missense_Mutation p.S196L 0.44 deleterious(0) possibly_damaging(0.907) TCGA-XK-AAIW-01 19 3542791 3542791 C A MFSD12 Missense_Mutation p.W535C 0.72 unknown(0) TCGA-XK-AAIW-01 19 35434553 35434553 G A ZNF30 Missense_Mutation p.G229E 0.23 deleterious(0) benign(0.237) TCGA-XK-AAIW-01 19 35435319 35435319 C T ZNF30 Silent p.P484P 0.29 TCGA-XK-AAIW-01 19 35435549 35435549 G A ZNF30 Missense_Mutation p.S561N 0.46 deleterious(0.03) possibly_damaging(0.482) TCGA-XK-AAIW-01 19 35449064 35449064 G A ZNF792 Silent p.S565S 0.12 TCGA-XK-AAIW-01 19 35449581 35449581 G A ZNF792 Missense_Mutation p.A393V 0.12 deleterious(0) benign(0.336) TCGA-XK-AAIW-01 19 35510307 35510307 C T GRAMD1A Missense_Mutation p.R449C 0.37 deleterious(0.03) benign(0.004) TCGA-XK-AAIW-01 19 35510429 35510429 G A GRAMD1A Silent p.A489A 0.44 TCGA-XK-AAIW-01 19 35523489 35523489 G A SCN1B Missense_Mutation p.G33E 0.15 deleterious(0) possibly_damaging(0.728) TCGA-XK-AAIW-01 19 35524561 35524561 C T SCN1B Silent p.H122H 0.30 TCGA-XK-AAIW-01 19 35530127 35530127 C T SCN1B 3'Flank 0.44 TCGA-XK-AAIW-01 19 35551573 35551573 C T HPN Silent p.A221A 0.11 TCGA-XK-AAIW-01 19 35657345 35657345 G A FXYD5 Intron 0.30 TCGA-XK-AAIW-01 19 35741376 35741376 G A LSR Missense_Mutation p.D138N 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-XK-AAIW-01 19 35800807 35800807 G A MAG Missense_Mutation p.C421Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 35850518 35850518 C T FFAR3 Silent p.N242N 0.19 TCGA-XK-AAIW-01 19 3586531 3586531 G T GIPC3 Missense_Mutation p.M88I 0.12 deleterious(0.02) benign(0.017) TCGA-XK-AAIW-01 19 3600076 3600076 G A TBXA2R Missense_Mutation p.T186M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 19 3600087 3600087 C T TBXA2R Nonsense_Mutation p.W182* 0.26 TCGA-XK-AAIW-01 19 3600381 3600381 G A TBXA2R Silent p.I84I 0.27 TCGA-XK-AAIW-01 19 36017621 36017621 G A SBSN Silent p.G521G 0.34 TCGA-XK-AAIW-01 19 36038088 36038088 G A TMEM147 Missense_Mutation p.R166Q 0.36 tolerated(0.38) benign(0.002) TCGA-XK-AAIW-01 19 36038288 36038288 C T TMEM147 Missense_Mutation p.T205M 0.46 deleterious(0) probably_damaging(0.926) TCGA-XK-AAIW-01 19 36051292 36051292 C T ATP4A Missense_Mutation p.A254T 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-XK-AAIW-01 19 36122298 36122298 C T RBM42 Missense_Mutation p.R145W 0.48 deleterious(0.02) probably_damaging(0.984) TCGA-XK-AAIW-01 19 36215970 36215970 C T KMT2B Silent p.R1170R 0.34 TCGA-XK-AAIW-01 19 36216181 36216181 C T KMT2B Missense_Mutation p.P1197S 0.59 probably_damaging(0.968) TCGA-XK-AAIW-01 19 36219726 36219726 G A KMT2B Silent p.A1541A 0.35 TCGA-XK-AAIW-01 19 36223002 36223002 G - KMT2B Frame_Shift_Del p.G1879Vfs*16 0.37 TCGA-XK-AAIW-01 19 3623889 3623889 G A CACTIN Missense_Mutation p.R147W 0.44 deleterious(0) unknown(0) TCGA-XK-AAIW-01 19 36271177 36271177 C T ARHGAP33 Missense_Mutation p.A189V 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.695) TCGA-XK-AAIW-01 19 36340544 36340544 C T NPHS1 Missense_Mutation p.R207Q 0.36 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 19 36348250 36348250 C T KIRREL2 Missense_Mutation p.P22L 0.42 tolerated(0.72) benign(0.001) TCGA-XK-AAIW-01 19 36365707 36365707 C T APLP1 Missense_Mutation p.T427M 0.48 deleterious(0) probably_damaging(0.948) TCGA-XK-AAIW-01 19 36365764 36365764 G A APLP1 Missense_Mutation p.R446H 0.21 deleterious(0.02) benign(0.119) TCGA-XK-AAIW-01 19 36395135 36395135 G A HCST 3'UTR 0.44 TCGA-XK-AAIW-01 19 36430574 36430574 A G LRFN3 Missense_Mutation p.T83A 0.14 deleterious(0) possibly_damaging(0.844) TCGA-XK-AAIW-01 19 36431691 36431691 G A LRFN3 Missense_Mutation p.R455H 0.64 deleterious(0.01) probably_damaging(0.986) TCGA-XK-AAIW-01 19 36594100 36594100 C T WDR62 Missense_Mutation p.R1169C 0.21 tolerated(0.23) benign(0.002) TCGA-XK-AAIW-01 19 36594432 36594432 C T WDR62 Silent p.L1234L 0.31 TCGA-XK-AAIW-01 19 36633826 36633826 G A CAPNS1 Missense_Mutation p.A117T 0.45 deleterious(0.03) possibly_damaging(0.896) TCGA-XK-AAIW-01 19 37118007 37118007 C T ZNF382 Missense_Mutation p.T403I 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 372675 372675 C T THEG Silent p.L197L 0.11 TCGA-XK-AAIW-01 19 37367688 37367688 C T ZNF345 Intron 0.29 TCGA-XK-AAIW-01 19 37643374 37643374 G A ZNF585A Missense_Mutation p.T421I 0.14 tolerated(0.21) possibly_damaging(0.9) TCGA-XK-AAIW-01 19 37644232 37644232 T C ZNF585A Missense_Mutation p.E135G 0.18 tolerated(0.06) benign(0.067) TCGA-XK-AAIW-01 19 3778309 3778309 C T MATK Missense_Mutation p.A467T 0.37 tolerated(0.55) benign(0.003) TCGA-XK-AAIW-01 19 3784338 3784338 C T MATK Missense_Mutation p.E83K 0.55 tolerated(0.67) benign(0.188) TCGA-XK-AAIW-01 19 37854238 37854238 C T HKR1 Missense_Mutation p.T514M 0.28 tolerated(0.14) possibly_damaging(0.905) TCGA-XK-AAIW-01 19 37905219 37905219 T A ZNF569 Missense_Mutation p.E114V 0.36 deleterious(0.02) benign(0.283) TCGA-XK-AAIW-01 19 38028242 38028242 G A ZNF793 Missense_Mutation p.V228I 0.48 tolerated(0.2) benign(0.002) TCGA-XK-AAIW-01 19 38028574 38028574 G A ZNF793 Silent p.P338P 0.42 TCGA-XK-AAIW-01 19 38028666 38028666 G A ZNF793 Missense_Mutation p.C369Y 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 38160644 38160644 C T ZNF781 Missense_Mutation p.G136R 0.42 tolerated(0.78) benign(0.326) TCGA-XK-AAIW-01 19 38190090 38190090 G A ZNF607 Silent p.C314C 0.30 TCGA-XK-AAIW-01 19 38229572 38229572 C T ZNF573 Missense_Mutation p.G607R 0.48 deleterious(0.03) benign(0.003) TCGA-XK-AAIW-01 19 3833723 3833723 C T ZFR2 Silent p.P106P 0.31 TCGA-XK-AAIW-01 19 38713072 38713072 C T DPF1 Missense_Mutation p.A102T 0.36 deleterious(0) possibly_damaging(0.622) TCGA-XK-AAIW-01 19 38860668 38860668 C T CATSPERG Missense_Mutation p.A1026V 0.33 deleterious(0) possibly_damaging(0.682) TCGA-XK-AAIW-01 19 38861468 38861468 G A CATSPERG 3'UTR 0.30 TCGA-XK-AAIW-01 19 38912645 38912645 C T RASGRP4 Missense_Mutation p.E58K 0.42 deleterious(0.03) possibly_damaging(0.57) TCGA-XK-AAIW-01 19 38945986 38945986 G A RYR1 Missense_Mutation p.V518M 0.39 possibly_damaging(0.864) TCGA-XK-AAIW-01 19 38956955 38956955 G A RYR1 Missense_Mutation p.R1032H 0.55 possibly_damaging(0.9) TCGA-XK-AAIW-01 19 38976522 38976522 G A RYR1 Missense_Mutation p.A1743T 0.38 benign(0.067) TCGA-XK-AAIW-01 19 39052042 39052042 G A RYR1 Missense_Mutation p.R4191H 0.43 benign(0.003) TCGA-XK-AAIW-01 19 39096286 39096286 C T MAP4K1 Missense_Mutation p.A429T 0.68 tolerated(0.26) benign(0.166) TCGA-XK-AAIW-01 19 39127593 39127593 G A EIF3K 3'UTR 0.15 TCGA-XK-AAIW-01 19 39191247 39191247 C T ACTN4 Missense_Mutation p.T57M 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 39207768 39207768 C T ACTN4 Missense_Mutation p.R319C 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 39218657 39218657 C T ACTN4 Silent p.N803N 0.40 TCGA-XK-AAIW-01 19 39220008 39220008 C T ACTN4 Missense_Mutation p.A891V 0.37 deleterious(0.01) benign(0.056) TCGA-XK-AAIW-01 19 39281406 39281406 C T LGALS7B Missense_Mutation p.S58L 0.18 deleterious(0.01) possibly_damaging(0.875) TCGA-XK-AAIW-01 19 39299546 39299546 G A LGALS4 Silent p.D59D 0.43 TCGA-XK-AAIW-01 19 39303130 39303130 G A LGALS4 Silent p.G25G 0.30 TCGA-XK-AAIW-01 19 39308102 39308102 C T ECH1 Missense_Mutation p.V155I 0.22 tolerated(0.13) benign(0.179) TCGA-XK-AAIW-01 19 39390163 39390163 G A SIRT2 5'UTR 0.13 TCGA-XK-AAIW-01 19 39398152 39398152 C T NFKBIB Silent p.G274G 0.37 TCGA-XK-AAIW-01 19 39399312 39399312 G T NFKBIB Intron 0.32 TCGA-XK-AAIW-01 19 39399383 39399383 G A NFKBIB Missense_Mutation p.D328N 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-XK-AAIW-01 19 39521716 39521716 C T FBXO27 Nonsense_Mutation p.W175* 0.15 TCGA-XK-AAIW-01 19 3964791 3964791 C T DAPK3 Silent p.T87T 0.14 TCGA-XK-AAIW-01 19 39759403 39759403 G A IFNL2 Missense_Mutation p.G33R 0.47 tolerated(0.61) benign(0.001) TCGA-XK-AAIW-01 19 3978015 3978015 G A EEF2 Silent p.S623S 0.50 TCGA-XK-AAIW-01 19 39823717 39823717 C A GMFG Missense_Mutation p.R67M 0.37 deleterious(0) probably_damaging(0.962) TCGA-XK-AAIW-01 19 39879256 39879256 C T PAF1 Silent p.T267T 0.17 TCGA-XK-AAIW-01 19 39962264 39962264 G A SUPT5H Missense_Mutation p.R615H 0.56 deleterious(0.01) possibly_damaging(0.856) TCGA-XK-AAIW-01 19 39963546 39963546 G A SUPT5H Missense_Mutation p.R711H 0.46 deleterious(0) probably_damaging(0.977) TCGA-XK-AAIW-01 19 39977113 39977113 A G TIMM50 Missense_Mutation p.Y328C 0.41 deleterious(0) probably_damaging(0.926) TCGA-XK-AAIW-01 19 39979204 39979204 C T TIMM50 Silent p.D396D 0.17 TCGA-XK-AAIW-01 19 4013216 4013216 A G PIAS4 Missense_Mutation p.Y108C 0.35 tolerated(0.12) possibly_damaging(0.491) TCGA-XK-AAIW-01 19 40199920 40199920 T C LGALS14 Silent p.D158D 0.39 TCGA-XK-AAIW-01 19 40316606 40316606 G A DYRK1B Nonsense_Mutation p.R547* 0.40 TCGA-XK-AAIW-01 19 40364195 40364195 C T FCGBP Missense_Mutation p.R4816H 0.18 benign(0.108) TCGA-XK-AAIW-01 19 4037780 4037780 G T PIAS4 Missense_Mutation p.E480D 0.27 tolerated(0.39) benign(0.002) TCGA-XK-AAIW-01 19 40398445 40398445 G A FCGBP Silent p.G2174G 0.39 TCGA-XK-AAIW-01 19 4048173 4048173 G A ZBTB7A Silent p.G444G 0.51 TCGA-XK-AAIW-01 19 40739504 40739504 A G AKT2 3'UTR 0.20 TCGA-XK-AAIW-01 19 40762906 40762906 G T AKT2 Silent p.S34S 0.40 TCGA-XK-AAIW-01 19 40834430 40834430 A C C19orf47 Missense_Mutation p.L147R 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 40899994 40899994 C T PRX Missense_Mutation p.R1422Q 0.11 tolerated(0.31) benign(0.417) TCGA-XK-AAIW-01 19 41025863 41025863 C T SPTBN4 Silent p.S1153S 0.38 TCGA-XK-AAIW-01 19 41063166 41063166 G A SPTBN4 Missense_Mutation p.A1843T 0.36 deleterious(0.03) possibly_damaging(0.845) TCGA-XK-AAIW-01 19 4110567 4110567 G A MAP2K2 Silent p.I130I 0.26 TCGA-XK-AAIW-01 19 41125316 41125316 C T LTBP4 Silent p.G1111G 0.35 TCGA-XK-AAIW-01 19 41129556 41129556 G A LTBP4 Missense_Mutation p.V1268M 0.35 deleterious(0.02) benign(0.245) TCGA-XK-AAIW-01 19 41209498 41209498 G A ADCK4 Silent p.S249S 0.43 TCGA-XK-AAIW-01 19 41292636 41292636 C T RAB4B Missense_Mutation p.A166V 0.33 deleterious(0.03) benign(0.037) TCGA-XK-AAIW-01 19 41292855 41292855 C T RAB4B Missense_Mutation p.P210L 0.33 tolerated(0.08) benign(0.018) TCGA-XK-AAIW-01 19 41307260 41307260 C T EGLN2 Silent p.D261D 0.35 TCGA-XK-AAIW-01 19 41386435 41386435 G A CYP2A7 Missense_Mutation p.R148C 0.25 deleterious(0.01) possibly_damaging(0.796) TCGA-XK-AAIW-01 19 41450288 41450288 G A AC092071.1 5'Flank 0.17 TCGA-XK-AAIW-01 19 41601670 41601670 C T CYP2A13 Missense_Mutation p.R437W 0.52 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 19 41737137 41737137 G A AXL Silent p.T239T 0.35 TCGA-XK-AAIW-01 19 4174911 4174911 G A SIRT6 Silent p.Y257Y 0.19 TCGA-XK-AAIW-01 19 41808629 41808629 C T HNRNPUL1 Nonsense_Mutation p.Q583* 0.40 TCGA-XK-AAIW-01 19 41822696 41822696 A G CCDC97 Missense_Mutation p.T152A 0.34 tolerated(0.06) probably_damaging(0.957) TCGA-XK-AAIW-01 19 41828534 41828534 G A CCDC97 Missense_Mutation p.D316N 0.17 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 41903140 41903140 C T EXOSC5 Missense_Mutation p.A32T 0.41 tolerated(0.42) benign(0.015) TCGA-XK-AAIW-01 19 41931655 41931655 G A B3GNT8 Silent p.A343A 0.39 TCGA-XK-AAIW-01 19 42342249 42342249 C T LYPD4 Missense_Mutation p.G100R 0.29 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 4234688 4234688 T G EBI3 Missense_Mutation p.V135G 0.37 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 19 42409371 42409371 C T ARHGEF1 Missense_Mutation p.P780L 0.44 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 42583593 42583593 C T ZNF574 Missense_Mutation p.R279C 0.32 tolerated(0.07) possibly_damaging(0.876) TCGA-XK-AAIW-01 19 42585299 42585299 G A ZNF574 Silent p.Q847Q 0.12 TCGA-XK-AAIW-01 19 42713926 42713926 C T DEDD2 Missense_Mutation p.R172Q 0.38 tolerated(0.23) possibly_damaging(0.602) TCGA-XK-AAIW-01 19 42729173 42729173 C T ZNF526 Silent p.C206C 0.39 TCGA-XK-AAIW-01 19 42736822 42736822 G A GSK3A Nonsense_Mutation p.R371* 0.32 TCGA-XK-AAIW-01 19 42753014 42753014 G A ERF Missense_Mutation p.A417V 0.45 tolerated_low_confidence(0.14) benign(0.036) TCGA-XK-AAIW-01 19 42795296 42795296 G A CIC Silent p.A792A 0.31 TCGA-XK-AAIW-01 19 42848911 42848911 G A MEGF8 Missense_Mutation p.V675I 0.37 tolerated(0.4) benign(0.001) TCGA-XK-AAIW-01 19 4288303 4288303 C T SHD Silent p.G260G 0.26 TCGA-XK-AAIW-01 19 4288329 4288329 C T SHD Missense_Mutation p.T269I 0.18 deleterious(0) possibly_damaging(0.833) TCGA-XK-AAIW-01 19 42910406 42910406 G A LIPE Silent p.L758L 0.32 TCGA-XK-AAIW-01 19 4292565 4292565 G A TMIGD2 3'UTR 0.10 TCGA-XK-AAIW-01 19 4292775 4292775 T A TMIGD2 Missense_Mutation p.T224S 0.22 tolerated(0.06) benign(0.072) TCGA-XK-AAIW-01 19 43233462 43233462 C T PSG3 Silent p.L352L 0.34 TCGA-XK-AAIW-01 19 4323367 4323367 C T FSD1 Silent p.A438A 0.39 TCGA-XK-AAIW-01 19 4327199 4327199 C T STAP2 Missense_Mutation p.V229M 0.41 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 19 43349446 43349446 G A PSG10P Intron 0.20 TCGA-XK-AAIW-01 19 43439705 43439705 G A PSG7 Missense_Mutation p.A94V 0.16 tolerated(0.06) benign(0.127) TCGA-XK-AAIW-01 19 43965686 43965686 G A LYPD3 Silent p.H286H 0.40 TCGA-XK-AAIW-01 19 43979558 43979558 C T PHLDB3 3'UTR 0.57 TCGA-XK-AAIW-01 19 44096121 44096121 G T IRGQ 3'UTR 0.34 TCGA-XK-AAIW-01 19 44096981 44096981 C T IRGQ Missense_Mutation p.A357T 0.26 tolerated(0.3) benign(0.013) TCGA-XK-AAIW-01 19 44223605 44223605 C T IRGC Missense_Mutation p.R299C 0.35 deleterious(0.03) probably_damaging(0.973) TCGA-XK-AAIW-01 19 44241781 44241781 G A SMG9 Silent p.V321V 0.28 TCGA-XK-AAIW-01 19 44301832 44301832 T C LYPD5 Missense_Mutation p.T223A 0.37 tolerated(0.65) benign(0.008) TCGA-XK-AAIW-01 19 4433428 4433428 C T CHAF1A Silent p.S855S 0.40 TCGA-XK-AAIW-01 19 44418988 44418988 G T ZNF45 Silent p.A200A 0.33 TCGA-XK-AAIW-01 19 44470941 44470941 G T ZNF221 Missense_Mutation p.K429N 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 44514886 44514886 G A ZNF230 Missense_Mutation p.G232D 0.37 deleterious(0.03) probably_damaging(0.93) TCGA-XK-AAIW-01 19 4454004 4454004 G A UBXN6 Missense_Mutation p.A57V 0.37 deleterious(0.01) possibly_damaging(0.899) TCGA-XK-AAIW-01 19 44610888 44610888 G A ZNF224 Missense_Mutation p.R192H 0.43 tolerated(0.82) benign(0.007) TCGA-XK-AAIW-01 19 44635250 44635250 C T ZNF225 Silent p.S161S 0.45 TCGA-XK-AAIW-01 19 44661065 44661065 G A ZNF234 Missense_Mutation p.R299H 0.34 tolerated(0.37) probably_damaging(0.938) TCGA-XK-AAIW-01 19 44680182 44680182 A G ZNF226 Missense_Mutation p.E256G 0.32 tolerated(0.08) benign(0.006) TCGA-XK-AAIW-01 19 44740962 44740962 C T ZNF227 Silent p.V793V 0.35 TCGA-XK-AAIW-01 19 44777926 44777926 A G ZNF233 Silent p.T371T 0.46 TCGA-XK-AAIW-01 19 44831640 44831640 C T ZNF112 Silent p.K896K 0.35 TCGA-XK-AAIW-01 19 44833243 44833243 T C ZNF112 Missense_Mutation p.N362S 0.21 tolerated(0.56) benign(0.003) TCGA-XK-AAIW-01 19 44980970 44980970 C T ZNF180 Silent p.P576P 0.41 TCGA-XK-AAIW-01 19 44981523 44981523 C T ZNF180 Missense_Mutation p.R392Q 0.28 tolerated(0.8) possibly_damaging(0.82) TCGA-XK-AAIW-01 19 45001411 45001411 G A ZNF180 Silent p.S19S 0.30 TCGA-XK-AAIW-01 19 45026872 45026872 T C CEACAM20 RNA 0.64 TCGA-XK-AAIW-01 19 45284308 45284308 G A CBLC Missense_Mutation p.R167Q 0.24 deleterious(0.05) probably_damaging(0.983) TCGA-XK-AAIW-01 19 4529278 4529279 - C PLIN5 Intron 0.38 TCGA-XK-AAIW-01 19 4529714 4529714 G T PLIN5 Intron 0.43 TCGA-XK-AAIW-01 19 45368708 45368708 G A PVRL2 Missense_Mutation p.G90D 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 19 4538169 4538169 G A LRG1 Missense_Mutation p.P276L 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 45411122 45411122 G A APOE Missense_Mutation p.R50H 0.59 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 19 45411823 45411823 G T APOE Missense_Mutation p.K90N 0.22 tolerated(0.39) benign(0.27) TCGA-XK-AAIW-01 19 45419502 45419502 G T APOC1 Missense_Mutation p.K38N 0.38 deleterious(0.01) benign(0.131) TCGA-XK-AAIW-01 19 45490618 45490618 G A CLPTM1 Silent p.S325S 0.57 TCGA-XK-AAIW-01 19 45515271 45515271 C T RELB Missense_Mutation p.R81C 0.29 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-XK-AAIW-01 19 45515383 45515383 C T RELB Missense_Mutation p.A118V 0.21 tolerated(0.09) benign(0.017) TCGA-XK-AAIW-01 19 45593396 45593396 C T GEMIN7 Silent p.P8P 0.38 TCGA-XK-AAIW-01 19 45888900 45888900 G A PPP1R13L Missense_Mutation p.T723M 0.25 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 19 45923631 45923631 C T ERCC1 Missense_Mutation p.V126I 0.35 tolerated(1) benign(0.007) TCGA-XK-AAIW-01 19 46003248 46003248 T C PPM1N Silent p.P327P 0.38 TCGA-XK-AAIW-01 19 46205061 46205061 C T QPCTL Missense_Mutation p.R298C 0.30 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 46216179 46216179 C T FBXO46 Missense_Mutation p.R192Q 0.50 tolerated(0.24) benign(0.228) TCGA-XK-AAIW-01 19 46289586 46289586 C T DMWD Missense_Mutation p.A390T 0.15 tolerated(0.13) benign(0.038) TCGA-XK-AAIW-01 19 46319153 46319153 C T SYMPK Missense_Mutation p.E1215K 0.41 deleterious_low_confidence(0.02) benign(0.039) TCGA-XK-AAIW-01 19 46331150 46331150 G A SYMPK Missense_Mutation p.A671V 0.37 tolerated(0.06) benign(0.073) TCGA-XK-AAIW-01 19 46332278 46332278 G A SYMPK Silent p.C645C 0.37 TCGA-XK-AAIW-01 19 46375966 46375966 G A FOXA3 Missense_Mutation p.G235R 0.50 tolerated(0.1) benign(0.008) TCGA-XK-AAIW-01 19 46857144 46857144 G A PPP5C Silent p.R87R 0.50 TCGA-XK-AAIW-01 19 46915402 46915402 G A CCDC8 Silent p.G222G 0.67 TCGA-XK-AAIW-01 19 46973978 46973978 C A PNMAL1 Missense_Mutation p.E105D 0.14 tolerated(0.08) benign(0.388) TCGA-XK-AAIW-01 19 46997592 46997592 G A PNMAL2 Silent p.S377S 0.36 TCGA-XK-AAIW-01 19 46998410 46998410 G A PNMAL2 Nonsense_Mutation p.Q105* 0.08 TCGA-XK-AAIW-01 19 4704219 4704219 C T DPP9 Missense_Mutation p.S175N 0.43 tolerated(0.46) benign(0.263) TCGA-XK-AAIW-01 19 47195019 47195019 A G PRKD2 Missense_Mutation p.S559P 0.40 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 19 47228829 47228829 C T STRN4 Missense_Mutation p.R449H 0.26 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 19 47231891 47231891 C T STRN4 Silent p.G341G 0.31 TCGA-XK-AAIW-01 19 47278811 47278811 C T SLC1A5 Missense_Mutation p.A528T 0.37 tolerated(0.13) benign(0.003) TCGA-XK-AAIW-01 19 47423942 47423942 G A ARHGAP35 Silent p.S670S 0.35 TCGA-XK-AAIW-01 19 47424426 47424426 C T ARHGAP35 Missense_Mutation p.R832W 0.33 deleterious(0) possibly_damaging(0.893) TCGA-XK-AAIW-01 19 47570545 47570545 C T ZC3H4 Missense_Mutation p.A994T 0.52 unknown(0) TCGA-XK-AAIW-01 19 47585445 47585445 C T ZC3H4 Missense_Mutation p.M442I 0.45 unknown(0) TCGA-XK-AAIW-01 19 47587613 47587613 G A ZC3H4 Missense_Mutation p.R403C 0.36 unknown(0) TCGA-XK-AAIW-01 19 47844630 47844630 G A C5AR2 Missense_Mutation p.G192S 0.37 tolerated(0.13) possibly_damaging(0.566) TCGA-XK-AAIW-01 19 47876928 47876928 G A DHX34 Missense_Mutation p.E679K 0.29 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 47884452 47884452 G A DHX34 Missense_Mutation p.D1057N 0.33 tolerated(0.11) benign(0.244) TCGA-XK-AAIW-01 19 47941165 47941165 G A SLC8A2 Missense_Mutation p.P651S 0.32 deleterious(0) possibly_damaging(0.768) TCGA-XK-AAIW-01 19 47951338 47951338 G A SLC8A2 Silent p.D497D 0.55 TCGA-XK-AAIW-01 19 48183474 48183474 G A GLTSCR1 Silent p.T349T 0.64 TCGA-XK-AAIW-01 19 48259855 48259855 G T GLTSCR2 Missense_Mutation p.R456I 0.29 deleterious(0) possibly_damaging(0.825) TCGA-XK-AAIW-01 19 48260286 48260286 G A GLTSCR2 3'UTR 0.32 TCGA-XK-AAIW-01 19 48887660 48887660 G A KDELR1 Missense_Mutation p.A144V 0.48 tolerated(0.14) probably_damaging(0.992) TCGA-XK-AAIW-01 19 48965165 48965165 C T KCNJ14 Missense_Mutation p.R62C 0.45 tolerated(0.12) probably_damaging(0.915) TCGA-XK-AAIW-01 19 48965166 48965166 G A KCNJ14 Missense_Mutation p.R62H 0.36 tolerated(0.52) benign(0.039) TCGA-XK-AAIW-01 19 49113195 49113195 G A FAM83E Silent p.S232S 0.52 TCGA-XK-AAIW-01 19 49164917 49164917 G A NTN5 3'UTR 0.46 TCGA-XK-AAIW-01 19 49206450 49206450 C T FUT2 Silent p.Y79Y 0.36 TCGA-XK-AAIW-01 19 49244260 49244260 C T IZUMO1 Missense_Mutation p.D320N 0.48 tolerated(0.33) benign(0.009) TCGA-XK-AAIW-01 19 49303237 49303237 C T BCAT2 Splice_Site p.X177_splice 0.25 TCGA-XK-AAIW-01 19 49309972 49309972 A G BCAT2 Silent p.A34A 0.50 TCGA-XK-AAIW-01 19 49362848 49362848 G A PLEKHA4 Silent p.R190R 0.37 TCGA-XK-AAIW-01 19 49363659 49363659 G A PLEKHA4 Missense_Mutation p.R142W 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 49363689 49363689 C T PLEKHA4 Missense_Mutation p.V132I 0.46 tolerated(0.16) probably_damaging(0.997) TCGA-XK-AAIW-01 19 49409102 49409102 G A NUCB1 Silent p.R112R 0.40 TCGA-XK-AAIW-01 19 49416276 49416276 G A NUCB1 Silent p.R163R 0.26 TCGA-XK-AAIW-01 19 49490492 49490492 C T GYS1 Missense_Mutation p.A151T 0.32 tolerated(0.27) possibly_damaging(0.504) TCGA-XK-AAIW-01 19 49494707 49494707 G A GYS1 Missense_Mutation p.A51V 0.38 tolerated(0.27) possibly_damaging(0.794) TCGA-XK-AAIW-01 19 49507653 49507653 G A RUVBL2 Silent p.T81T 0.10 TCGA-XK-AAIW-01 19 49510398 49510398 G A RUVBL2 Missense_Mutation p.R130H 0.46 deleterious(0.01) probably_damaging(0.926) TCGA-XK-AAIW-01 19 49573733 49573733 A G KCNA7 Missense_Mutation p.F320L 0.31 tolerated(0.27) probably_damaging(0.99) TCGA-XK-AAIW-01 19 49643082 49643082 G A PPFIA3 Missense_Mutation p.R745Q 0.46 tolerated(0.22) possibly_damaging(0.883) TCGA-XK-AAIW-01 19 49656894 49656894 T C HRC Missense_Mutation p.E534G 0.30 deleterious(0.03) probably_damaging(0.932) TCGA-XK-AAIW-01 19 49657622 49657622 G A HRC Silent p.R291R 0.34 TCGA-XK-AAIW-01 19 49713566 49713566 C T TRPM4 Missense_Mutation p.P1078S 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 49793460 49793460 G A SLC6A16 Missense_Mutation p.P711S 0.38 tolerated(0.28) benign(0.003) TCGA-XK-AAIW-01 19 49814513 49814513 G A SLC6A16 Missense_Mutation p.T31M 0.59 deleterious(0.04) benign(0.287) TCGA-XK-AAIW-01 19 49897812 49897812 C T CCDC155 Silent p.F41F 0.32 TCGA-XK-AAIW-01 19 49950633 49950633 C A PIH1D1 Silent p.G191G 0.12 TCGA-XK-AAIW-01 19 49954061 49954061 C T PIH1D1 Silent p.S45S 0.32 TCGA-XK-AAIW-01 19 50031839 50031839 C T RCN3 Missense_Mutation p.A37V 0.35 tolerated(0.28) benign(0.024) TCGA-XK-AAIW-01 19 50059642 50059642 G A NOSIP Missense_Mutation p.R256W 0.45 deleterious(0.04) benign(0.098) TCGA-XK-AAIW-01 19 50062167 50062167 G A NOSIP Missense_Mutation p.A82V 0.36 tolerated(0.08) benign(0.16) TCGA-XK-AAIW-01 19 50097976 50097976 G T PRR12 Silent p.T128T 0.40 TCGA-XK-AAIW-01 19 50154650 50154650 C T SCAF1 Missense_Mutation p.T335M 0.25 benign(0.356) TCGA-XK-AAIW-01 19 50154651 50154651 G A SCAF1 Silent p.T335T 0.23 TCGA-XK-AAIW-01 19 50191419 50191419 C T PRMT1 Missense_Mutation p.R345W 0.33 deleterious(0.02) probably_damaging(0.975) TCGA-XK-AAIW-01 19 50285952 50285952 C T AP2A1 Silent p.A148A 0.38 TCGA-XK-AAIW-01 19 50302734 50302734 C T AP2A1 Silent p.T372T 0.33 TCGA-XK-AAIW-01 19 50304787 50304787 C T AP2A1 Missense_Mutation p.A565V 0.30 tolerated(0.4) benign(0.195) TCGA-XK-AAIW-01 19 50338353 50338353 C T MED25 Silent p.S531S 0.06 TCGA-XK-AAIW-01 19 50374839 50374839 T C AKT1S1 Missense_Mutation p.T218A 0.38 tolerated(0.72) benign(0.009) TCGA-XK-AAIW-01 19 50397557 50397557 G T IL4I1 Missense_Mutation p.P201T 0.36 deleterious(0.01) probably_damaging(0.983) TCGA-XK-AAIW-01 19 5039901 5039901 G A KDM4B Missense_Mutation p.V66M 0.38 benign(0.011) TCGA-XK-AAIW-01 19 50412681 50412681 G A NUP62 Silent p.T128T 0.36 TCGA-XK-AAIW-01 19 50434121 50434121 C T ATF5 Missense_Mutation p.A5V 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-XK-AAIW-01 19 50436130 50436130 C T ATF5 Silent p.R210R 0.27 TCGA-XK-AAIW-01 19 5047489 5047489 C T KDM4B Silent p.D145D 0.54 TCGA-XK-AAIW-01 19 50519379 50519379 G A VRK3 Missense_Mutation p.A14V 0.08 tolerated(0.12) benign(0.098) TCGA-XK-AAIW-01 19 50657963 50657963 C T IZUMO2 Missense_Mutation p.A173T 0.14 tolerated(1) possibly_damaging(0.682) TCGA-XK-AAIW-01 19 50730173 50730173 G A MYH14 Missense_Mutation p.R275H 0.28 deleterious(0) probably_damaging(0.954) TCGA-XK-AAIW-01 19 50783375 50783375 G T MYH14 Nonsense_Mutation p.E1372* 0.60 TCGA-XK-AAIW-01 19 50792779 50792779 G A MYH14 Silent p.L1613L 0.31 TCGA-XK-AAIW-01 19 50912858 50912858 G A POLD1 Missense_Mutation p.A697T 0.41 deleterious(0) probably_damaging(0.928) TCGA-XK-AAIW-01 19 50918754 50918754 G A POLD1 Missense_Mutation p.R875H 0.57 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 19 50962223 50962223 G A MYBPC2 Missense_Mutation p.R852H 0.47 deleterious(0.01) possibly_damaging(0.813) TCGA-XK-AAIW-01 19 50979390 50979390 C T FAM71E1 Missense_Mutation p.A86T 0.32 deleterious(0.02) benign(0.039) TCGA-XK-AAIW-01 19 5111404 5111404 G A KDM4B Intron 0.11 TCGA-XK-AAIW-01 19 51135606 51135606 C A SYT3 Missense_Mutation p.S204I 0.61 deleterious(0.02) benign(0.007) TCGA-XK-AAIW-01 19 51329883 51329883 G T KLK15 Silent p.S204S 0.30 TCGA-XK-AAIW-01 19 5135490 5135490 G A KDM4B Silent p.P742P 0.46 TCGA-XK-AAIW-01 19 51451971 51451971 G A KLK5 Silent p.C217C 0.42 TCGA-XK-AAIW-01 19 51462348 51462348 G T KLK6 3'UTR 0.38 TCGA-XK-AAIW-01 19 51466703 51466703 G A KLK6 Silent p.A100A 0.43 TCGA-XK-AAIW-01 19 51507095 51507095 C T KLK9 Silent p.A156A 0.36 TCGA-XK-AAIW-01 19 51509868 51509868 G A KLK9 Silent p.S104S 0.36 TCGA-XK-AAIW-01 19 51535246 51535246 G A KLK12 Missense_Mutation p.R115C 0.52 deleterious(0.05) possibly_damaging(0.526) TCGA-XK-AAIW-01 19 51875455 51875455 G A NKG7 Silent p.G88G 0.45 TCGA-XK-AAIW-01 19 518948 518948 G T TPGS1 Missense_Mutation p.R133M 0.43 deleterious(0.04) possibly_damaging(0.688) TCGA-XK-AAIW-01 19 51981850 51981850 C T CEACAM18 Missense_Mutation p.A46V 0.45 tolerated_low_confidence(0.17) benign(0.246) TCGA-XK-AAIW-01 19 52002816 52002816 G T SIGLEC12 Silent p.I321I 0.29 TCGA-XK-AAIW-01 19 5208351 5208351 G A PTPRS Nonsense_Mutation p.Q1847* 0.17 TCGA-XK-AAIW-01 19 5214594 5214594 G A PTPRS Missense_Mutation p.T1491M 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 52219536 52219536 C T HAS1 Missense_Mutation p.R345H 0.46 deleterious(0) probably_damaging(0.957) TCGA-XK-AAIW-01 19 52394712 52394712 C A ZNF649 Missense_Mutation p.R226I 0.10 deleterious(0.01) possibly_damaging(0.65) TCGA-XK-AAIW-01 19 52497638 52497638 G A ZNF615 Missense_Mutation p.P242S 0.40 tolerated(0.12) benign(0.004) TCGA-XK-AAIW-01 19 52521726 52521726 C T ZNF614 Missense_Mutation p.V13M 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 19 52529040 52529040 C T ZNF614 5'UTR 0.36 TCGA-XK-AAIW-01 19 52550227 52550227 G A ZNF432 5'UTR 0.41 TCGA-XK-AAIW-01 19 52619034 52619034 G A ZNF616 Silent p.G461G 0.35 TCGA-XK-AAIW-01 19 52619169 52619169 C T ZNF616 Silent p.K416K 0.11 TCGA-XK-AAIW-01 19 53208330 53208330 C T ZNF611 Missense_Mutation p.V660M 0.39 tolerated(0.07) possibly_damaging(0.826) TCGA-XK-AAIW-01 19 53453281 53453281 G A ZNF816 Missense_Mutation p.H583Y 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 53572740 53572740 G T ZNF160 Silent p.A349A 0.36 TCGA-XK-AAIW-01 19 53611696 53611696 A G ZNF415 Silent p.S534S 0.31 TCGA-XK-AAIW-01 19 53612554 53612554 C T ZNF415 Silent p.L248L 0.17 TCGA-XK-AAIW-01 19 53668564 53668564 C T ZNF665 Silent p.Q393Q 0.19 TCGA-XK-AAIW-01 19 537014 537014 A G CDC34 Missense_Mutation p.T122A 0.10 deleterious(0) possibly_damaging(0.829) TCGA-XK-AAIW-01 19 53854688 53854688 C T ZNF845 Nonsense_Mutation p.Q254* 0.44 TCGA-XK-AAIW-01 19 53855127 53855127 G A ZNF845 Missense_Mutation p.R400H 0.40 tolerated(0.16) possibly_damaging(0.829) TCGA-XK-AAIW-01 19 53884645 53884645 C T ZNF525 Silent p.Y271Y 0.42 TCGA-XK-AAIW-01 19 53884662 53884662 G A ZNF525 Missense_Mutation p.G277D 0.36 tolerated(0.08) probably_damaging(0.999) TCGA-XK-AAIW-01 19 53987091 53987091 G T ZNF813 Missense_Mutation p.Q5H 0.29 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 54072570 54072570 G A ZNF331 5'UTR 0.38 TCGA-XK-AAIW-01 19 54191763 54191763 G A MIR1283-1 RNA 0.43 TCGA-XK-AAIW-01 19 54214334 54214334 G A MIR524 RNA 0.11 TCGA-XK-AAIW-01 19 54291980 54291980 C T NLRP12 3'Flank 0.31 TCGA-XK-AAIW-01 19 54483212 54483212 G A CACNG8 Silent p.K153K 0.40 TCGA-XK-AAIW-01 19 54545614 54545614 G A VSTM1 Missense_Mutation p.T135I 0.21 tolerated(0.65) benign(0.001) TCGA-XK-AAIW-01 19 54647752 54647752 G A CNOT3 Missense_Mutation p.R90Q 0.41 tolerated(0.07) probably_damaging(0.993) TCGA-XK-AAIW-01 19 54692156 54692156 G A MBOAT7 Missense_Mutation p.L41F 0.52 tolerated(0.13) benign(0.007) TCGA-XK-AAIW-01 19 54760570 54760570 G A LILRB5 Missense_Mutation p.T46I 0.10 deleterious(0.04) probably_damaging(0.973) TCGA-XK-AAIW-01 19 54778648 54778648 G A LILRB2 Silent p.Y562Y 0.32 TCGA-XK-AAIW-01 19 54848844 54848844 G A LILRA4 Missense_Mutation p.A260V 0.38 tolerated(0.06) benign(0.102) TCGA-XK-AAIW-01 19 54965781 54965781 C T LENG8 Missense_Mutation p.T200M 0.33 tolerated(0.06) benign(0.343) TCGA-XK-AAIW-01 19 54967330 54967330 C T LENG8 Missense_Mutation p.R404C 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 54969333 54969333 G A LENG8 Missense_Mutation p.A652T 0.17 tolerated(0.31) benign(0.012) TCGA-XK-AAIW-01 19 54969700 54969700 C T LENG8 Missense_Mutation p.T747I 0.44 deleterious(0) probably_damaging(0.978) TCGA-XK-AAIW-01 19 55085828 55085828 C T LILRA2 Missense_Mutation p.P44L 0.45 deleterious(0) probably_damaging(0.975) TCGA-XK-AAIW-01 19 55222078 55222078 C T AC098784.2 3'Flank 0.38 TCGA-XK-AAIW-01 19 55447772 55447772 C T NLRP7 Silent p.A719A 0.20 TCGA-XK-AAIW-01 19 55556432 55556432 G A RDH13 3'UTR 0.23 TCGA-XK-AAIW-01 19 55591780 55591780 A G EPS8L1 Intron 0.75 TCGA-XK-AAIW-01 19 55603041 55603041 C T PPP1R12C Missense_Mutation p.A747T 0.23 deleterious(0.03) probably_damaging(0.99) TCGA-XK-AAIW-01 19 55624037 55624037 C T PPP1R12C Missense_Mutation p.A150T 0.41 tolerated(0.21) benign(0.054) TCGA-XK-AAIW-01 19 55698949 55698949 C A PTPRH Missense_Mutation p.S833I 0.42 benign(0.206) TCGA-XK-AAIW-01 19 55743183 55743183 C T PPP6R1 Missense_Mutation p.A765T 0.62 tolerated(0.24) benign(0.002) TCGA-XK-AAIW-01 19 55758474 55758474 C T PPP6R1 5'UTR 0.47 TCGA-XK-AAIW-01 19 55814126 55814126 C T BRSK1 Missense_Mutation p.R307W 0.11 deleterious(0) possibly_damaging(0.689) TCGA-XK-AAIW-01 19 55814226 55814226 G A BRSK1 Missense_Mutation p.R340H 0.24 deleterious(0.01) possibly_damaging(0.522) TCGA-XK-AAIW-01 19 55889218 55889218 G A TMEM190 Missense_Mutation p.G90D 0.37 deleterious(0.01) benign(0.322) TCGA-XK-AAIW-01 19 55899546 55899546 C T RPL28 Intron 0.62 TCGA-XK-AAIW-01 19 56109064 56109064 G A FIZ1 Silent p.C56C 0.44 TCGA-XK-AAIW-01 19 56170636 56170636 G A U2AF2 Missense_Mutation p.R37H 0.31 tolerated_low_confidence(0.08) possibly_damaging(0.572) TCGA-XK-AAIW-01 19 56223303 56223303 G A NLRP9 Silent p.C902C 0.46 TCGA-XK-AAIW-01 19 56228221 56228221 C T NLRP9 Missense_Mutation p.A735T 0.34 deleterious(0.03) possibly_damaging(0.509) TCGA-XK-AAIW-01 19 56307518 56307518 G A NLRP11 Missense_Mutation p.P757L 0.40 tolerated(0.1) probably_damaging(0.949) TCGA-XK-AAIW-01 19 56424065 56424065 G A NLRP13 Missense_Mutation p.A373V 0.28 tolerated(0.24) benign(0.072) TCGA-XK-AAIW-01 19 56424125 56424125 A G NLRP13 Missense_Mutation p.L353S 0.33 deleterious(0) probably_damaging(0.979) TCGA-XK-AAIW-01 19 56465875 56465875 C T NLRP8 Missense_Mutation p.R151W 0.53 deleterious(0.01) possibly_damaging(0.53) TCGA-XK-AAIW-01 19 56466968 56466968 C T NLRP8 Missense_Mutation p.A515V 0.39 deleterious(0) probably_damaging(0.926) TCGA-XK-AAIW-01 19 56600280 56600280 C T ZNF787 Silent p.T87T 0.33 TCGA-XK-AAIW-01 19 5661677 5661677 C T SAFB Missense_Mutation p.R671C 0.45 deleterious(0) unknown(0) TCGA-XK-AAIW-01 19 56701610 56701610 G A ZSCAN5B Silent p.D358D 0.39 TCGA-XK-AAIW-01 19 56935181 56935181 G A ZNF583 Missense_Mutation p.C385Y 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 5707726 5707726 G A LONP1 Silent p.D348D 0.42 TCGA-XK-AAIW-01 19 57175979 57175979 G A ZNF835 Silent p.C196C 0.58 TCGA-XK-AAIW-01 19 57176450 57176450 G A ZNF835 Silent p.A39A 0.25 TCGA-XK-AAIW-01 19 57286765 57286765 G T ZIM2 Missense_Mutation p.S292Y 0.31 tolerated(0.19) possibly_damaging(0.809) TCGA-XK-AAIW-01 19 57325822 57325822 G A PEG3 Missense_Mutation p.P1330S 0.29 tolerated(0.07) possibly_damaging(0.486) TCGA-XK-AAIW-01 19 5744496 5744496 C T CATSPERD Missense_Mutation p.A211V 0.38 deleterious(0) benign(0.346) TCGA-XK-AAIW-01 19 57640482 57640482 C T USP29 Missense_Mutation p.P147S 0.38 tolerated(0.25) benign(0.042) TCGA-XK-AAIW-01 19 57746297 57746297 G A AURKC Missense_Mutation p.M210I 0.21 deleterious(0.04) benign(0.218) TCGA-XK-AAIW-01 19 57746642 57746642 C T AURKC Missense_Mutation p.P263S 0.19 tolerated(1) benign(0.086) TCGA-XK-AAIW-01 19 5784044 5784044 C T PRR22 Missense_Mutation p.G72R 0.44 deleterious(0.04) probably_damaging(1) TCGA-XK-AAIW-01 19 57883175 57883175 C T ZNF547 Missense_Mutation p.A17V 0.39 deleterious(0.04) possibly_damaging(0.885) TCGA-XK-AAIW-01 19 57910579 57910579 G A ZNF548 Silent p.P320P 0.37 TCGA-XK-AAIW-01 19 58084040 58084040 T G ZNF416 Missense_Mutation p.E411A 0.36 deleterious(0.01) possibly_damaging(0.871) TCGA-XK-AAIW-01 19 58117342 58117342 G A ZNF530 Missense_Mutation p.G150E 0.10 tolerated(1) benign(0.006) TCGA-XK-AAIW-01 19 58131867 58131867 C T ZNF134 Missense_Mutation p.P127L 0.50 tolerated(0.44) benign(0) TCGA-XK-AAIW-01 19 58132278 58132278 A G ZNF134 Missense_Mutation p.E264G 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-XK-AAIW-01 19 58232531 58232531 G A ZNF671 Missense_Mutation p.T308I 0.40 deleterious(0.04) probably_damaging(0.995) TCGA-XK-AAIW-01 19 58301720 58301720 C A ZNF586 Missense_Mutation p.L39M 0.43 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 19 58371214 58371214 C T ZNF587 Silent p.S478S 0.37 TCGA-XK-AAIW-01 19 58384980 58384980 C T ZNF814 Missense_Mutation p.S593N 0.48 tolerated(0.5) possibly_damaging(0.517) TCGA-XK-AAIW-01 19 58437963 58437963 C T ZNF418 Missense_Mutation p.R529Q 0.23 tolerated(1) probably_damaging(0.968) TCGA-XK-AAIW-01 19 58438297 58438297 G A ZNF418 Nonsense_Mutation p.R418* 0.33 TCGA-XK-AAIW-01 19 58454003 58454003 G A ZNF256 Missense_Mutation p.A58V 0.42 tolerated(0.44) benign(0.006) TCGA-XK-AAIW-01 19 58846467 58846467 C T ZSCAN22 Missense_Mutation p.A100V 0.46 tolerated(0.32) benign(0.001) TCGA-XK-AAIW-01 19 58867511 58867511 C T ZNF497 Silent p.A497A 0.37 TCGA-XK-AAIW-01 19 58904796 58904796 G A RPS5 Missense_Mutation p.R130H 0.27 tolerated(0.21) benign(0.125) TCGA-XK-AAIW-01 19 58982235 58982235 C T ZNF324 Missense_Mutation p.R126W 0.09 tolerated(0.07) possibly_damaging(0.551) TCGA-XK-AAIW-01 19 58983156 58983156 G A ZNF324 Missense_Mutation p.A433T 0.40 tolerated(0.06) possibly_damaging(0.508) TCGA-XK-AAIW-01 19 59012676 59012676 G A SLC27A5 Missense_Mutation p.R387W 0.31 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 5914990 5914990 G A CAPS Missense_Mutation p.A101T 0.50 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 19 5925679 5925679 C T RANBP3 Missense_Mutation p.A295T 0.18 deleterious(0.04) possibly_damaging(0.727) TCGA-XK-AAIW-01 19 5933453 5933453 C T RANBP3 Silent p.T148T 0.26 TCGA-XK-AAIW-01 19 5997117 5997117 C T RFX2 Missense_Mutation p.R656H 0.50 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 19 6002838 6002838 G A RFX2 Missense_Mutation p.T515M 0.29 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 19 603876 603876 C T HCN2 Missense_Mutation p.A322V 0.14 deleterious(0.03) benign(0.196) TCGA-XK-AAIW-01 19 621235 621235 C T POLRMT Silent p.A821A 0.32 TCGA-XK-AAIW-01 19 6222297 6222297 C T MLLT1 Silent p.S315S 0.33 TCGA-XK-AAIW-01 19 623584 623584 G A POLRMT Missense_Mutation p.P387L 0.40 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 19 6270767 6270767 T C MLLT1 Missense_Mutation p.T6A 0.22 tolerated(1) benign(0.014) TCGA-XK-AAIW-01 19 6362454 6362454 C T CLPP Intron 0.36 TCGA-XK-AAIW-01 19 6389529 6389529 G A GTF2F1 Silent p.Y84Y 0.40 TCGA-XK-AAIW-01 19 6415312 6415312 G A KHSRP Missense_Mutation p.A656V 0.26 deleterious(0.03) benign(0.032) TCGA-XK-AAIW-01 19 6427257 6427257 A G SLC25A41 Missense_Mutation p.L266P 0.27 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 19 6454479 6454479 G T SLC25A23 Missense_Mutation p.A217D 0.49 deleterious(0.01) possibly_damaging(0.673) TCGA-XK-AAIW-01 19 6495417 6495417 C T TUBB4A Missense_Mutation p.A365T 0.36 deleterious_low_confidence(0.03) benign(0.429) TCGA-XK-AAIW-01 19 6664968 6664968 G A TNFSF14 Missense_Mutation p.T231I 0.46 deleterious(0) possibly_damaging(0.905) TCGA-XK-AAIW-01 19 6707910 6707910 C T C3 Missense_Mutation p.G626S 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-XK-AAIW-01 19 6732129 6732129 C T GPR108 Missense_Mutation p.R388H 0.27 deleterious(0.01) possibly_damaging(0.738) TCGA-XK-AAIW-01 19 6743769 6743769 C T TRIP10 Silent p.N188N 0.40 TCGA-XK-AAIW-01 19 6760819 6760819 C T SH2D3A Silent p.E83E 0.44 TCGA-XK-AAIW-01 19 6760867 6760867 C T SH2D3A Silent p.L67L 0.13 TCGA-XK-AAIW-01 19 681555 681555 G A FSTL3 Missense_Mutation p.C243Y 0.23 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 7125510 7125510 G A INSR Silent p.D1014D 0.50 TCGA-XK-AAIW-01 19 7267687 7267687 C T INSR Silent p.T107T 0.33 TCGA-XK-AAIW-01 19 7595240 7595240 G A MCOLN1 Silent p.T476T 0.37 TCGA-XK-AAIW-01 19 7606907 7606907 G A PNPLA6 Silent p.S411S 0.39 TCGA-XK-AAIW-01 19 7607506 7607506 G A PNPLA6 Missense_Mutation p.V447M 0.44 tolerated(0.12) benign(0.025) TCGA-XK-AAIW-01 19 7687308 7687308 C T XAB2 Missense_Mutation p.R509H 0.41 deleterious(0.03) benign(0.088) TCGA-XK-AAIW-01 19 7687517 7687517 C T XAB2 Missense_Mutation p.E468K 0.35 tolerated(0.56) benign(0.006) TCGA-XK-AAIW-01 19 7697340 7697340 C T PCP2 Missense_Mutation p.R77H 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 7709605 7709605 C T STXBP2 Missense_Mutation p.R405W 0.46 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 7925513 7925513 C T EVI5L Missense_Mutation p.R481W 0.62 deleterious(0) possibly_damaging(0.794) TCGA-XK-AAIW-01 19 7965683 7965683 C T LRRC8E Missense_Mutation p.A759V 0.40 tolerated(0.61) benign(0) TCGA-XK-AAIW-01 19 7975010 7975010 G A MAP2K7 Missense_Mutation p.G110D 0.17 tolerated(0.09) benign(0.26) TCGA-XK-AAIW-01 19 7987037 7987037 G A SNAPC2 Missense_Mutation p.A164T 0.48 tolerated(0.71) benign(0.027) TCGA-XK-AAIW-01 19 7992563 7992563 G A TIMM44 Silent p.G406G 0.46 TCGA-XK-AAIW-01 19 804602 804602 C T PTBP1 Missense_Mutation p.A169V 0.42 tolerated(0.12) benign(0.066) TCGA-XK-AAIW-01 19 804675 804675 C T PTBP1 Silent p.Y193Y 0.09 TCGA-XK-AAIW-01 19 805040 805040 G A PTBP1 Missense_Mutation p.A249T 0.46 tolerated(0.07) benign(0.027) TCGA-XK-AAIW-01 19 814746 814746 C A LPPR3 Missense_Mutation p.K201N 0.24 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 19 8152025 8152025 A G FBN3 Silent p.G2230G 0.26 TCGA-XK-AAIW-01 19 8175995 8175995 C T FBN3 Missense_Mutation p.R1386H 0.43 deleterious(0.03) benign(0.104) TCGA-XK-AAIW-01 19 8182106 8182106 C T FBN3 Missense_Mutation p.R1178Q 0.38 tolerated(0.45) benign(0.004) TCGA-XK-AAIW-01 19 828253 828253 G A AZU1 Missense_Mutation p.V28I 0.36 tolerated(0.06) probably_damaging(0.983) TCGA-XK-AAIW-01 19 8381425 8381425 A G NDUFA7 Missense_Mutation p.I69T 0.50 deleterious(0) benign(0.36) TCGA-XK-AAIW-01 19 8464808 8464808 C T RAB11B Silent p.N34N 0.18 TCGA-XK-AAIW-01 19 8612935 8612935 G A MYO1F Silent p.T418T 0.41 TCGA-XK-AAIW-01 19 8613157 8613157 G A MYO1F Silent p.I382I 0.49 TCGA-XK-AAIW-01 19 8660982 8660982 G A ADAMTS10 Missense_Mutation p.R438C 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 19 8668659 8668659 C T ADAMTS10 Missense_Mutation p.R182H 0.38 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 19 8670528 8670528 G A ADAMTS10 Missense_Mutation p.T23M 0.17 tolerated(0.11) benign(0.052) TCGA-XK-AAIW-01 19 8993026 8993026 G T MUC16 Missense_Mutation p.S13911R 0.32 possibly_damaging(0.833) TCGA-XK-AAIW-01 19 8997151 8997151 G T MUC16 Missense_Mutation p.P13682H 0.38 probably_damaging(0.997) TCGA-XK-AAIW-01 19 9025600 9025600 G A MUC16 Missense_Mutation p.T12285I 0.37 possibly_damaging(0.491) TCGA-XK-AAIW-01 19 9033726 9033726 G A MUC16 Missense_Mutation p.P12071S 0.23 benign(0.104) TCGA-XK-AAIW-01 19 9059156 9059157 - T MUC16 Frame_Shift_Ins p.N9430Kfs*27 0.47 TCGA-XK-AAIW-01 19 9061060 9061060 C T MUC16 Missense_Mutation p.A8796T 0.18 unknown(0) TCGA-XK-AAIW-01 19 9064349 9064349 A G MUC16 Silent p.P7699P 0.13 TCGA-XK-AAIW-01 19 9066185 9066185 A G MUC16 Silent p.S7087S 0.21 TCGA-XK-AAIW-01 19 9066188 9066188 G A MUC16 Silent p.S7086S 0.47 TCGA-XK-AAIW-01 19 9075008 9075008 T C MUC16 Silent p.S4146S 0.41 TCGA-XK-AAIW-01 19 9226080 9226080 G A OR7G1 Silent p.Y120Y 0.45 TCGA-XK-AAIW-01 19 9577923 9577923 G A ZNF560 Missense_Mutation p.A567V 0.15 deleterious(0) benign(0.005) TCGA-XK-AAIW-01 19 9583864 9583864 C A ZNF560 Missense_Mutation p.V77F 0.37 tolerated(0.72) benign(0.003) TCGA-XK-AAIW-01 19 9721558 9721558 T A ZNF561 Missense_Mutation p.K260I 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 19 9872823 9872823 C T ZNF846 Missense_Mutation p.R55H 0.31 tolerated(0.06) benign(0.082) TCGA-XK-AAIW-01 19 989795 989795 C T WDR18 Nonsense_Mutation p.R119* 0.43 TCGA-XK-AAIW-01 19 990902 990902 G A WDR18 Silent p.V216V 0.25 TCGA-XK-AAIW-01 19 9965200 9965200 C T OLFM2 Missense_Mutation p.G343S 0.36 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 19 9967951 9967951 C T OLFM2 Missense_Mutation p.A190T 0.45 tolerated(0.49) benign(0.012) TCGA-XK-AAIW-01 1 100346235 100346235 C T AGL Nonsense_Mutation p.R595* 0.36 TCGA-XK-AAIW-01 1 100346680 100346680 G A AGL Missense_Mutation p.A650T 0.39 deleterious(0.03) possibly_damaging(0.882) TCGA-XK-AAIW-01 1 100621788 100621788 G A LRRC39 Missense_Mutation p.A200V 0.31 tolerated(0.11) possibly_damaging(0.69) TCGA-XK-AAIW-01 1 100964937 100964937 C T CDC14A 3'UTR 0.19 TCGA-XK-AAIW-01 1 101198116 101198116 G A VCAM1 Silent p.Q556Q 0.19 TCGA-XK-AAIW-01 1 101203801 101203801 T C VCAM1 Missense_Mutation p.S728P 0.37 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 101377677 101377677 G T SLC30A7 Missense_Mutation p.A132S 0.37 deleterious(0.01) benign(0.156) TCGA-XK-AAIW-01 1 101705100 101705100 C T S1PR1 Missense_Mutation p.A187V 0.37 tolerated(0.1) benign(0.002) TCGA-XK-AAIW-01 1 102290602 102290602 C T OLFM3 Missense_Mutation p.R191H 0.09 tolerated(0.64) benign(0.003) TCGA-XK-AAIW-01 1 10231366 10231366 G A UBE4B Silent p.A1168A 0.32 TCGA-XK-AAIW-01 1 103364241 103364241 C T COL11A1 Missense_Mutation p.R1410Q 0.32 unknown(0) TCGA-XK-AAIW-01 1 103364546 103364546 G T COL11A1 Missense_Mutation p.P1364H 0.45 unknown(0) TCGA-XK-AAIW-01 1 103428213 103428213 G A COL11A1 Missense_Mutation p.A1007V 0.42 unknown(0) TCGA-XK-AAIW-01 1 103491098 103491098 C T COL11A1 Silent p.R323R 0.26 TCGA-XK-AAIW-01 1 10523527 10523527 C T DFFA Missense_Mutation p.A198T 0.43 deleterious(0.05) probably_damaging(0.979) TCGA-XK-AAIW-01 1 10523635 10523635 G A DFFA Missense_Mutation p.R162C 0.39 tolerated(0.47) benign(0.001) TCGA-XK-AAIW-01 1 10699862 10699862 G A CASZ1 Missense_Mutation p.H1473Y 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-XK-AAIW-01 1 10714603 10714603 G A CASZ1 Missense_Mutation p.H571Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 108185257 108185257 T C VAV3 Missense_Mutation p.H633R 0.45 deleterious(0.01) possibly_damaging(0.673) TCGA-XK-AAIW-01 1 109241902 109241902 C T PRPF38B Missense_Mutation p.R301C 0.32 deleterious(0) unknown(0) TCGA-XK-AAIW-01 1 109271293 109271293 C T FNDC7 Missense_Mutation p.A470V 0.24 tolerated(0.23) benign(0.005) TCGA-XK-AAIW-01 1 109369845 109369845 G A AKNAD1 Missense_Mutation p.H640Y 0.35 tolerated(0.38) benign(0.019) TCGA-XK-AAIW-01 1 109465125 109465125 T C GPSM2 Silent p.C509C 0.35 TCGA-XK-AAIW-01 1 109650563 109650563 C T C1orf194 Missense_Mutation p.A48T 0.46 tolerated(0.1) benign(0.026) TCGA-XK-AAIW-01 1 109714585 109714585 G A KIAA1324 Missense_Mutation p.V189I 0.40 tolerated(0.1) possibly_damaging(0.592) TCGA-XK-AAIW-01 1 109716141 109716141 G A KIAA1324 Missense_Mutation p.A248T 0.36 deleterious(0.03) possibly_damaging(0.646) TCGA-XK-AAIW-01 1 109780463 109780463 G A SARS Missense_Mutation p.V500I 0.54 tolerated(0.19) benign(0.004) TCGA-XK-AAIW-01 1 109793291 109793291 G A CELSR2 Missense_Mutation p.G197D 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 1 109793871 109793871 G T CELSR2 Missense_Mutation p.E390D 0.47 tolerated(0.52) probably_damaging(0.945) TCGA-XK-AAIW-01 1 109794459 109794459 C G CELSR2 Silent p.G586G 0.38 TCGA-XK-AAIW-01 1 109795355 109795355 C T CELSR2 Missense_Mutation p.A885V 0.33 tolerated(0.09) benign(0.271) TCGA-XK-AAIW-01 1 109804178 109804178 C T CELSR2 Missense_Mutation p.R1409C 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 109805882 109805882 C T CELSR2 Silent p.C1609C 0.52 TCGA-XK-AAIW-01 1 110031508 110031508 G A ATXN7L2 Missense_Mutation p.A275T 0.12 tolerated(0.38) benign(0.042) TCGA-XK-AAIW-01 1 110141517 110141517 C A GNAI3 3'Flank 0.31 TCGA-XK-AAIW-01 1 110169887 110169887 G A AMPD2 Missense_Mutation p.R324H 0.31 deleterious(0.03) benign(0.35) TCGA-XK-AAIW-01 1 110170723 110170723 G A AMPD2 Missense_Mutation p.A421T 0.53 deleterious(0.04) probably_damaging(0.999) TCGA-XK-AAIW-01 1 110212156 110212156 G A GSTM2 Missense_Mutation p.R108H 0.26 tolerated(0.08) benign(0.369) TCGA-XK-AAIW-01 1 110255354 110255354 C T GSTM5 Intron 0.20 TCGA-XK-AAIW-01 1 110255982 110255982 C T GSTM5 Intron 0.39 TCGA-XK-AAIW-01 1 110299664 110299664 A G EPS8L3 Silent p.L366L 0.31 TCGA-XK-AAIW-01 1 110466717 110466717 C T CSF1 Nonsense_Mutation p.Q492* 0.34 TCGA-XK-AAIW-01 1 110559021 110559021 G A AHCYL1 Missense_Mutation p.D280N 0.39 deleterious(0.02) probably_damaging(0.924) TCGA-XK-AAIW-01 1 110561184 110561184 G A AHCYL1 Missense_Mutation p.R410H 0.42 tolerated(0.16) benign(0.009) TCGA-XK-AAIW-01 1 110584162 110584162 C A STRIP1 Missense_Mutation p.L219M 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-XK-AAIW-01 1 110716609 110716609 G T SLC6A17 Silent p.V153V 0.40 TCGA-XK-AAIW-01 1 110737405 110737405 C A SLC6A17 Intron 0.32 TCGA-XK-AAIW-01 1 11090891 11090891 T C MASP2 Missense_Mutation p.Y379C 0.47 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 1 110998981 110998981 C T PROK1 3'UTR 0.41 TCGA-XK-AAIW-01 1 111147039 111147039 C T KCNA2 Silent p.A122A 0.34 TCGA-XK-AAIW-01 1 11115092 11115092 G A SRM Missense_Mutation p.A272V 0.24 tolerated(0.16) benign(0.001) TCGA-XK-AAIW-01 1 11119363 11119363 G A SRM Silent p.I69I 0.47 TCGA-XK-AAIW-01 1 111216429 111216429 C T KCNA3 Missense_Mutation p.A335T 0.39 deleterious(0) probably_damaging(0.979) TCGA-XK-AAIW-01 1 111216459 111216459 G A KCNA3 Nonsense_Mutation p.R325* 0.18 TCGA-XK-AAIW-01 1 111492507 111492507 G C LRIF1 Missense_Mutation p.T612R 0.39 tolerated(0.39) probably_damaging(0.934) TCGA-XK-AAIW-01 1 111494603 111494603 C T LRIF1 Silent p.T301T 0.41 TCGA-XK-AAIW-01 1 111660776 111660776 C A DRAM2 3'UTR 0.41 TCGA-XK-AAIW-01 1 111824404 111824404 C A CHIAP2 RNA 0.58 TCGA-XK-AAIW-01 1 1118412 1118412 C T TTLL10 Missense_Mutation p.A358V 0.48 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 1 111889622 111889622 T C PIFO Missense_Mutation p.V37A 0.35 tolerated(0.28) benign(0.137) TCGA-XK-AAIW-01 1 11190690 11190690 T C MTOR Missense_Mutation p.T1837A 0.35 tolerated(0.8) possibly_damaging(0.523) TCGA-XK-AAIW-01 1 111965561 111965561 C T OVGP1 Missense_Mutation p.R199H 0.29 tolerated(0.22) benign(0.027) TCGA-XK-AAIW-01 1 111983960 111983960 C T WDR77 Silent p.P307P 0.40 TCGA-XK-AAIW-01 1 112045933 112045933 T C ADORA3 Missense_Mutation p.Y15C 0.39 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-XK-AAIW-01 1 11259693 11259693 T G MTOR Missense_Mutation p.I1338L 0.48 deleterious(0.02) benign(0.003) TCGA-XK-AAIW-01 1 11269467 11269467 G A MTOR Missense_Mutation p.R1235W 0.43 deleterious(0.01) possibly_damaging(0.774) TCGA-XK-AAIW-01 1 113058958 113058958 G T WNT2B Missense_Mutation p.K200N 0.08 deleterious(0) possibly_damaging(0.698) TCGA-XK-AAIW-01 1 113084467 113084467 A G ST7L Intron 0.29 TCGA-XK-AAIW-01 1 113239370 113239370 C A MOV10 Nonsense_Mutation p.Y700* 0.38 TCGA-XK-AAIW-01 1 113255619 113255619 C T PPM1J Missense_Mutation p.G159E 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 11345737 11345737 T C UBIAD1 Missense_Mutation p.I189T 0.34 deleterious(0.03) benign(0.007) TCGA-XK-AAIW-01 1 11346194 11346194 C T UBIAD1 3'UTR 0.44 TCGA-XK-AAIW-01 1 114165511 114165511 G A MAGI3 Missense_Mutation p.G419R 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 114310903 114310903 C A RSBN1 Silent p.G589G 0.49 TCGA-XK-AAIW-01 1 114401162 114401162 G A PTPN22 Nonsense_Mutation p.Q103* 0.33 TCGA-XK-AAIW-01 1 114512767 114512767 G A HIPK1 Silent p.V987V 0.21 TCGA-XK-AAIW-01 1 114680411 114680411 C A SYT6 Missense_Mutation p.K174N 0.30 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 114945490 114945490 G A TRIM33 Silent p.C928C 0.38 TCGA-XK-AAIW-01 1 114948128 114948128 G A TRIM33 Missense_Mutation p.A891V 0.45 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 114968110 114968110 C T TRIM33 Silent p.Q552Q 0.11 TCGA-XK-AAIW-01 1 115128180 115128180 C T DENND2C 3'UTR 0.25 TCGA-XK-AAIW-01 1 115217476 115217476 G A AMPD1 Missense_Mutation p.T599M 0.32 deleterious(0.01) probably_damaging(0.975) TCGA-XK-AAIW-01 1 115231344 115231344 C T AMPD1 Missense_Mutation p.R51H 0.29 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 1 115263337 115263337 G A CSDE1 Silent p.G671G 0.30 TCGA-XK-AAIW-01 1 116380583 116380583 G A NHLH2 3'UTR 0.57 TCGA-XK-AAIW-01 1 116569517 116569517 C T SLC22A15 Missense_Mutation p.S201L 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 117156481 117156481 G A IGSF3 Silent p.C246C 0.40 TCGA-XK-AAIW-01 1 11721246 11721246 C T FBXO44 Silent p.G228G 0.39 TCGA-XK-AAIW-01 1 11733379 11733379 G C FBXO6 Silent p.V185V 0.19 TCGA-XK-AAIW-01 1 11733705 11733705 G A FBXO6 Missense_Mutation p.V227I 0.09 deleterious(0) probably_damaging(0.946) TCGA-XK-AAIW-01 1 1179365 1179365 C T FAM132A Missense_Mutation p.R167Q 0.33 deleterious(0.01) benign(0.187) TCGA-XK-AAIW-01 1 118441732 118441732 G T GDAP2 Missense_Mutation p.P248H 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 118635826 118635826 G A SPAG17 Nonsense_Mutation p.Q376* 0.42 TCGA-XK-AAIW-01 1 11898394 11898394 C T CLCN6 Silent p.S766S 0.32 TCGA-XK-AAIW-01 1 119427790 119427790 G A TBX15 Silent p.G352G 0.12 TCGA-XK-AAIW-01 1 119584902 119584902 T C WARS2 Missense_Mutation p.D167G 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 119962120 119962120 C T HSD3B2 Silent p.D74D 0.44 TCGA-XK-AAIW-01 1 119964454 119964454 C A HSD3B2 Silent p.A110A 0.43 TCGA-XK-AAIW-01 1 119964755 119964755 C A HSD3B2 Missense_Mutation p.L211M 0.26 deleterious(0) probably_damaging(0.976) TCGA-XK-AAIW-01 1 120056532 120056532 C T HSD3B1 Missense_Mutation p.A129V 0.42 tolerated(0.28) benign(0.129) TCGA-XK-AAIW-01 1 12017931 12017931 G A PLOD1 Silent p.P258P 0.37 TCGA-XK-AAIW-01 1 12020809 12020809 C G PLOD1 Missense_Mutation p.A361G 0.32 tolerated(0.06) possibly_damaging(0.613) TCGA-XK-AAIW-01 1 120269491 120269491 C T PHGDH Missense_Mutation p.T125M 0.22 tolerated(0.22) possibly_damaging(0.475) TCGA-XK-AAIW-01 1 120342445 120342445 G A REG4 Missense_Mutation p.S69F 0.42 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 120437245 120437245 G A ADAM30 Missense_Mutation p.T572M 0.35 deleterious(0.04) probably_damaging(0.952) TCGA-XK-AAIW-01 1 120464896 120464896 G A NOTCH2 Missense_Mutation p.R1726C 0.12 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 120484202 120484202 C A NOTCH2 Missense_Mutation p.Q976H 0.33 deleterious(0.01) possibly_damaging(0.724) TCGA-XK-AAIW-01 1 12049245 12049245 G A MFN2 Missense_Mutation p.R7Q 0.54 tolerated(0.08) benign(0.067) TCGA-XK-AAIW-01 1 12175745 12175745 C A TNFRSF8 Missense_Mutation p.P302H 0.25 tolerated(0.06) benign(0.138) TCGA-XK-AAIW-01 1 12337557 12337557 G A VPS13D Silent p.T1304T 0.44 TCGA-XK-AAIW-01 1 12371652 12371652 G A VPS13D Silent p.R2264R 0.37 TCGA-XK-AAIW-01 1 12382686 12382686 G A VPS13D Missense_Mutation p.A2600T 0.36 benign(0.015) TCGA-XK-AAIW-01 1 12383814 12383814 G A VPS13D Missense_Mutation p.R2656H 0.35 possibly_damaging(0.904) TCGA-XK-AAIW-01 1 12387744 12387744 C T VPS13D Missense_Mutation p.A2677V 0.33 probably_damaging(0.987) TCGA-XK-AAIW-01 1 12389963 12389963 C T VPS13D Missense_Mutation p.R2759C 0.27 probably_damaging(0.994) TCGA-XK-AAIW-01 1 12416057 12416057 C T VPS13D Nonsense_Mutation p.Q3261* 0.33 TCGA-XK-AAIW-01 1 12443156 12443156 C A VPS13D Missense_Mutation p.P3771H 0.41 probably_damaging(0.998) TCGA-XK-AAIW-01 1 1267214 1267214 A G TAS1R3 Missense_Mutation p.N130D 0.41 tolerated(0.52) benign(0.015) TCGA-XK-AAIW-01 1 12721814 12721814 G A AADACL4 Missense_Mutation p.G133D 0.33 tolerated(0.18) benign(0.216) TCGA-XK-AAIW-01 1 12785858 12785858 G T AADACL3 Missense_Mutation p.E316D 0.34 deleterious(0.02) benign(0.057) TCGA-XK-AAIW-01 1 12837744 12837744 G A PRAMEF12 3'UTR 0.39 TCGA-XK-AAIW-01 1 13001190 13001190 T C PRAMEF6 Missense_Mutation p.T165A 0.12 tolerated(0.19) benign(0.297) TCGA-XK-AAIW-01 1 14057532 14057532 C T PRDM2 Missense_Mutation p.A16V 0.13 benign(0.349) TCGA-XK-AAIW-01 1 14105419 14105419 C T PRDM2 Missense_Mutation p.R377C 0.35 probably_damaging(1) TCGA-XK-AAIW-01 1 1421968 1421968 C T ATAD3B Silent p.G378G 0.23 TCGA-XK-AAIW-01 1 142713334 142713334 C A RP11-417J8.6 RNA 0.43 TCGA-XK-AAIW-01 1 144852427 144852427 C T PDE4DIP Missense_Mutation p.R2339H 0.15 tolerated(0.3) benign(0.396) TCGA-XK-AAIW-01 1 144857655 144857655 G T PDE4DIP Silent p.S2133S 0.12 TCGA-XK-AAIW-01 1 144879390 144879390 G T PDE4DIP Missense_Mutation p.L1354I 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 144911932 144911932 C A PDE4DIP Missense_Mutation p.S726I 0.16 deleterious(0.03) benign(0.361) TCGA-XK-AAIW-01 1 144994999 144994999 C T PDE4DIP 5'UTR 0.10 TCGA-XK-AAIW-01 1 145293404 145293404 G T NBPF10 5'UTR 0.09 TCGA-XK-AAIW-01 1 145293504 145293504 G T NBPF10 Missense_Mutation p.Q33H 0.12 possibly_damaging(0.782) TCGA-XK-AAIW-01 1 145299937 145299937 A G NBPF10 Missense_Mutation p.Y329C 0.31 probably_damaging(0.971) TCGA-XK-AAIW-01 1 145311109 145311109 G A NBPF10 Missense_Mutation p.R603Q 0.07 possibly_damaging(0.776) TCGA-XK-AAIW-01 1 145416688 145416688 C T HFE2 Missense_Mutation p.R345W 0.32 deleterious(0) possibly_damaging(0.809) TCGA-XK-AAIW-01 1 145438944 145438944 G T TXNIP Missense_Mutation p.A48S 0.52 deleterious(0.01) possibly_damaging(0.818) TCGA-XK-AAIW-01 1 145522818 145522818 C T PEX11B Missense_Mutation p.L227F 0.14 deleterious(0) possibly_damaging(0.824) TCGA-XK-AAIW-01 1 145528630 145528630 G A ITGA10 Missense_Mutation p.A143T 0.23 tolerated(0.19) benign(0.083) TCGA-XK-AAIW-01 1 145533448 145533448 G A ITGA10 Missense_Mutation p.R444H 0.34 tolerated(0.11) benign(0.028) TCGA-XK-AAIW-01 1 145533526 145533526 C A ITGA10 Missense_Mutation p.A470D 0.14 tolerated(0.37) benign(0.001) TCGA-XK-AAIW-01 1 145578061 145578061 G A PIAS3 Splice_Site p.X9_splice 0.31 TCGA-XK-AAIW-01 1 145578384 145578385 - C PIAS3 Frame_Shift_Ins p.L119Sfs*8 0.24 TCGA-XK-AAIW-01 1 1459697 1459697 C T ATAD3A Silent p.G426G 0.10 TCGA-XK-AAIW-01 1 146057376 146057376 C T NBPF11 Missense_Mutation p.R79H 0.30 tolerated(0.17) benign(0.002) TCGA-XK-AAIW-01 1 146684990 146684990 G A FMO5 Silent p.G124G 0.39 TCGA-XK-AAIW-01 1 1469346 1469346 C T ATAD3A Missense_Mutation p.A600V 0.41 tolerated(0.11) benign(0.147) TCGA-XK-AAIW-01 1 147096365 147096365 C T BCL9 Missense_Mutation p.P1296S 0.21 tolerated(0.5) probably_damaging(0.979) TCGA-XK-AAIW-01 1 147096381 147096381 A G BCL9 Missense_Mutation p.D1301G 0.52 tolerated(0.19) benign(0.221) TCGA-XK-AAIW-01 1 1479341 1479341 A G SSU72 Missense_Mutation p.C131R 0.16 tolerated(0.35) possibly_damaging(0.458) TCGA-XK-AAIW-01 1 148251961 148251961 C T NBPF20 Missense_Mutation p.A4594T 0.11 benign(0.062) TCGA-XK-AAIW-01 1 149879689 149879689 G A SV2A Silent p.R483R 0.14 TCGA-XK-AAIW-01 1 149883426 149883426 G A SV2A Silent p.S243S 0.39 TCGA-XK-AAIW-01 1 149898267 149898267 C T SF3B4 Splice_Site p.X236_splice 0.54 TCGA-XK-AAIW-01 1 149902422 149902422 T C MTMR11 Silent p.Q494Q 0.39 TCGA-XK-AAIW-01 1 149916659 149916659 G A OTUD7B Silent p.S543S 0.44 TCGA-XK-AAIW-01 1 150131408 150131408 G A PLEKHO1 Missense_Mutation p.R307Q 0.27 tolerated(0.5) benign(0.019) TCGA-XK-AAIW-01 1 150280702 150280702 G A MRPS21 3'UTR 0.22 TCGA-XK-AAIW-01 1 150444609 150444609 G A RPRD2 Missense_Mutation p.R1062H 0.36 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 150464910 150464910 G A TARS2 Missense_Mutation p.C240Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 150621038 150621038 C T GOLPH3L Missense_Mutation p.S206N 0.25 tolerated(0.31) benign(0.071) TCGA-XK-AAIW-01 1 150730372 150730372 G A CTSS Missense_Mutation p.H71Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 150772104 150772104 C T CTSK Missense_Mutation p.A234T 0.39 deleterious(0.02) probably_damaging(0.954) TCGA-XK-AAIW-01 1 150936118 150936118 C T SETDB1 Silent p.S1190S 0.35 TCGA-XK-AAIW-01 1 150940568 150940568 C T CERS2 Missense_Mutation p.R134Q 0.38 tolerated(0.54) benign(0.121) TCGA-XK-AAIW-01 1 150960778 150960778 A G ANXA9 Silent p.T271T 0.10 TCGA-XK-AAIW-01 1 151016175 151016175 C T BNIPL Missense_Mutation p.R275C 0.36 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 151263598 151263598 C T ZNF687 Silent p.C1209C 0.19 TCGA-XK-AAIW-01 1 151278675 151278675 C T PI4KB Silent p.V461V 0.46 TCGA-XK-AAIW-01 1 151316215 151316215 C T RFX5 Silent p.Q233Q 0.52 TCGA-XK-AAIW-01 1 151316303 151316303 G A RFX5 Missense_Mutation p.A204V 0.31 deleterious(0.02) probably_damaging(0.991) TCGA-XK-AAIW-01 1 151380973 151380973 C T POGZ Missense_Mutation p.A716T 0.09 tolerated(0.49) benign(0.002) TCGA-XK-AAIW-01 1 151396574 151396574 G A POGZ Silent p.G458G 0.34 TCGA-XK-AAIW-01 1 151396613 151396613 T C POGZ Silent p.S445S 0.35 TCGA-XK-AAIW-01 1 151491123 151491123 C T CGN Missense_Mutation p.A43V 0.40 tolerated(0.29) benign(0.156) TCGA-XK-AAIW-01 1 151503053 151503053 G A CGN Missense_Mutation p.R801H 0.50 tolerated(0.07) probably_damaging(0.928) TCGA-XK-AAIW-01 1 151680022 151680022 C T CELF3 Missense_Mutation p.A245T 0.36 tolerated(0.5) benign(0.004) TCGA-XK-AAIW-01 1 151752566 151752566 G A TDRKH Silent p.G94G 0.27 TCGA-XK-AAIW-01 1 151823652 151823652 C T THEM5 Missense_Mutation p.R114H 0.09 deleterious(0.04) benign(0.035) TCGA-XK-AAIW-01 1 152079962 152079962 G A TCHH Missense_Mutation p.R1911W 0.40 possibly_damaging(0.689) TCGA-XK-AAIW-01 1 152082617 152082617 G A TCHH Silent p.L1026L 0.31 TCGA-XK-AAIW-01 1 152187858 152187858 G A HRNR Nonsense_Mutation p.R2083* 0.31 TCGA-XK-AAIW-01 1 152192191 152192191 C G HRNR Missense_Mutation p.Q638H 0.18 unknown(0) TCGA-XK-AAIW-01 1 152192932 152192932 G T HRNR Silent p.G391G 0.31 TCGA-XK-AAIW-01 1 152275878 152275878 C T FLG Silent p.S3828S 0.40 TCGA-XK-AAIW-01 1 152276273 152276273 G A FLG Missense_Mutation p.R3697C 0.35 unknown(0) TCGA-XK-AAIW-01 1 152326915 152326915 C T FLG2 Missense_Mutation p.G1116D 0.34 unknown(0) TCGA-XK-AAIW-01 1 152327725 152327725 C T FLG2 Missense_Mutation p.G846D 0.40 unknown(0) TCGA-XK-AAIW-01 1 152733421 152733421 G T KPRP Missense_Mutation p.G453W 0.39 deleterious_low_confidence(0.04) benign(0.025) TCGA-XK-AAIW-01 1 153012804 153012804 G A SPRR2D Nonsense_Mutation p.Q7* 0.15 TCGA-XK-AAIW-01 1 153520234 153520234 C T S100A3 Missense_Mutation p.R77H 0.31 tolerated(0.6) benign(0.002) TCGA-XK-AAIW-01 1 153580145 153580145 C T S100A16 Silent p.A59A 0.51 TCGA-XK-AAIW-01 1 153588383 153588383 C A S100A14 5'UTR 0.69 TCGA-XK-AAIW-01 1 153635494 153635494 C T ILF2 Splice_Site p.X307_splice 0.37 TCGA-XK-AAIW-01 1 153719758 153719758 G A INTS3 Missense_Mutation p.V146M 0.60 tolerated(0.08) benign(0.216) TCGA-XK-AAIW-01 1 153914384 153914384 C T DENND4B Missense_Mutation p.R339H 0.34 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 153955843 153955843 G A RAB13 Intron 0.17 TCGA-XK-AAIW-01 1 154042824 154042824 G A NUP210L Silent p.L827L 0.42 TCGA-XK-AAIW-01 1 154072581 154072581 G A NUP210L Missense_Mutation p.H620Y 0.40 tolerated(0.09) benign(0.003) TCGA-XK-AAIW-01 1 154099885 154099885 C T NUP210L Missense_Mutation p.V363I 0.32 tolerated(0.42) benign(0.033) TCGA-XK-AAIW-01 1 154166159 154166159 G A TPM3 5'Flank 0.43 TCGA-XK-AAIW-01 1 154245979 154245979 G A HAX1 Missense_Mutation p.R74H 0.39 tolerated(0.18) benign(0.071) TCGA-XK-AAIW-01 1 154297008 154297008 G A AQP10 3'UTR 0.40 TCGA-XK-AAIW-01 1 154303924 154303924 G A ATP8B2 Missense_Mutation p.R136H 0.34 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 154317603 154317603 G A ATP8B2 Missense_Mutation p.G848R 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 154492814 154492814 C A TDRD10 Missense_Mutation p.P59H 0.14 deleterious(0) possibly_damaging(0.889) TCGA-XK-AAIW-01 1 154544124 154544124 G A CHRNB2 Silent p.A275A 0.42 TCGA-XK-AAIW-01 1 154548481 154548481 C T CHRNB2 3'UTR 0.32 TCGA-XK-AAIW-01 1 154557442 154557442 C T ADAR Missense_Mutation p.R1174H 0.33 deleterious(0.03) possibly_damaging(0.846) TCGA-XK-AAIW-01 1 154987273 154987273 G A ZBTB7B Missense_Mutation p.R80H 0.36 tolerated(0.14) benign(0.001) TCGA-XK-AAIW-01 1 154991112 154991112 C T DCST2 Missense_Mutation p.A744T 0.37 tolerated_low_confidence(0.31) benign(0.006) TCGA-XK-AAIW-01 1 155005967 155005967 C T DCST2 Missense_Mutation p.G71R 0.31 deleterious(0) probably_damaging(0.947) TCGA-XK-AAIW-01 1 155014322 155014322 G A DCST1 Missense_Mutation p.G294D 0.47 tolerated(0.85) benign(0.003) TCGA-XK-AAIW-01 1 155026631 155026631 C A ADAM15 Missense_Mutation p.N116K 0.32 deleterious(0.01) benign(0.05) TCGA-XK-AAIW-01 1 155026819 155026819 G A ADAM15 Missense_Mutation p.S150N 0.25 deleterious(0) possibly_damaging(0.906) TCGA-XK-AAIW-01 1 155156326 155156326 C T TRIM46 Missense_Mutation p.A647V 0.33 tolerated(0.57) possibly_damaging(0.523) TCGA-XK-AAIW-01 1 155156356 155156356 G A TRIM46 Missense_Mutation p.G657D 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 155206159 155206159 G A GBA Silent p.H367H 0.16 TCGA-XK-AAIW-01 1 155254437 155254437 G A HCN3 Nonsense_Mutation p.W326* 0.53 TCGA-XK-AAIW-01 1 155261708 155261708 C T PKLR Missense_Mutation p.R486Q 0.38 tolerated(0.05) benign(0.195) TCGA-XK-AAIW-01 1 155313529 155313529 G A ASH1L Silent p.D2662D 0.40 TCGA-XK-AAIW-01 1 155582956 155582956 G A MSTO1 Silent p.E405E 0.39 TCGA-XK-AAIW-01 1 155630479 155630479 G A YY1AP1 Missense_Mutation p.R546C 0.39 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-XK-AAIW-01 1 155721807 155721807 C T GON4L Silent p.V2138V 0.45 TCGA-XK-AAIW-01 1 155734786 155734786 C T GON4L Intron 0.34 TCGA-XK-AAIW-01 1 155744931 155744931 C T GON4L Missense_Mutation p.A738T 0.27 tolerated(0.27) probably_damaging(0.992) TCGA-XK-AAIW-01 1 155889699 155889699 A G KIAA0907 Intron 0.26 TCGA-XK-AAIW-01 1 155931685 155931685 C T ARHGEF2 Missense_Mutation p.R412H 0.29 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 1 155935172 155935172 G A ARHGEF2 Missense_Mutation p.R168C 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 1 156038134 156038134 C T RAB25 Nonsense_Mutation p.R105* 0.38 TCGA-XK-AAIW-01 1 156046389 156046389 C T MEX3A Silent p.T513T 0.32 TCGA-XK-AAIW-01 1 156100518 156100518 G A LMNA Missense_Mutation p.R156H 0.50 tolerated(0.08) possibly_damaging(0.46) TCGA-XK-AAIW-01 1 156106169 156106169 C T LMNA Missense_Mutation p.A441V 0.45 tolerated(0.07) benign(0.01) TCGA-XK-AAIW-01 1 156108906 156108906 C T LMNA 3'UTR 0.35 TCGA-XK-AAIW-01 1 156180190 156180190 C T SLC25A44 Nonsense_Mutation p.R305* 0.26 TCGA-XK-AAIW-01 1 156206122 156206122 G T PMF1 Intron 0.08 TCGA-XK-AAIW-01 1 156247016 156247016 C A SMG5 Missense_Mutation p.S105I 0.38 deleterious(0.01) probably_damaging(0.968) TCGA-XK-AAIW-01 1 156279038 156279038 G A CCT3 Silent p.G530G 0.34 TCGA-XK-AAIW-01 1 1562801 1562801 G A MIB2 Silent p.T615T 0.41 TCGA-XK-AAIW-01 1 156316633 156316633 G A TSACC Missense_Mutation p.A80T 0.45 tolerated(0.08) benign(0.003) TCGA-XK-AAIW-01 1 156348053 156348053 C T RHBG Missense_Mutation p.A179V 0.33 tolerated(0.49) possibly_damaging(0.664) TCGA-XK-AAIW-01 1 1563681 1563681 C T MIB2 Missense_Mutation p.R739W 0.23 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 1 156376942 156376942 A G C1orf61 Missense_Mutation p.M118T 0.27 deleterious_low_confidence(0) benign(0.402) TCGA-XK-AAIW-01 1 156437436 156437436 G A MEF2D 3'UTR 0.33 TCGA-XK-AAIW-01 1 156438739 156438739 A G MEF2D Silent p.N360N 0.54 TCGA-XK-AAIW-01 1 156444988 156444988 C T MEF2D Silent p.S306S 0.33 TCGA-XK-AAIW-01 1 156498308 156498308 C T IQGAP3 Missense_Mutation p.A1556T 0.33 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 1 156506973 156506973 G A IQGAP3 Missense_Mutation p.P1141L 0.42 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 1 156521862 156521862 G A IQGAP3 Nonsense_Mutation p.R492* 0.33 TCGA-XK-AAIW-01 1 156555582 156555582 T C TTC24 Missense_Mutation p.C512R 0.41 tolerated_low_confidence(0.12) benign(0.143) TCGA-XK-AAIW-01 1 156617818 156617818 G A BCAN Missense_Mutation p.D229N 0.34 tolerated(0.19) possibly_damaging(0.852) TCGA-XK-AAIW-01 1 156618630 156618630 G A BCAN Missense_Mutation p.R347H 0.90 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 156626136 156626136 C T BCAN Missense_Mutation p.R669C 0.42 deleterious(0.01) probably_damaging(0.965) TCGA-XK-AAIW-01 1 156693974 156693974 T C ISG20L2 Missense_Mutation p.H305R 0.17 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 1 156737869 156737869 G A PRCC Silent p.A102A 0.30 TCGA-XK-AAIW-01 1 156764468 156764468 G A PRCC Silent p.L397L 0.38 TCGA-XK-AAIW-01 1 156843599 156843599 G A NTRK1 Missense_Mutation p.R342Q 0.30 tolerated(0.6) benign(0.097) TCGA-XK-AAIW-01 1 156845889 156845889 C T NTRK1 Missense_Mutation p.R507C 0.30 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 156846280 156846280 G A NTRK1 Missense_Mutation p.R574H 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 1 156846355 156846355 G A NTRK1 Missense_Mutation p.R599H 0.39 deleterious(0) probably_damaging(0.976) TCGA-XK-AAIW-01 1 156878721 156878721 C G PEAR1 Missense_Mutation p.A435G 0.46 tolerated(0.09) benign(0.033) TCGA-XK-AAIW-01 1 156905766 156905766 C T ARHGEF11 3'UTR 0.33 TCGA-XK-AAIW-01 1 156918209 156918209 G A ARHGEF11 Silent p.N669N 0.47 TCGA-XK-AAIW-01 1 15736730 15736730 A G EFHD2 Missense_Mutation p.E88G 0.44 deleterious(0.01) benign(0.13) TCGA-XK-AAIW-01 1 157504575 157504575 G T FCRL5 Missense_Mutation p.L504I 0.47 tolerated(0.16) possibly_damaging(0.793) TCGA-XK-AAIW-01 1 157509011 157509011 G A FCRL5 Missense_Mutation p.R423C 0.71 deleterious(0.01) possibly_damaging(0.67) TCGA-XK-AAIW-01 1 157771295 157771295 G A FCRL1 Missense_Mutation p.A320V 0.36 tolerated(0.79) benign(0.001) TCGA-XK-AAIW-01 1 15783259 15783259 C T CELA2A Missense_Mutation p.T4M 0.46 tolerated(0.07) benign(0.245) TCGA-XK-AAIW-01 1 15813853 15813853 C T CELA2B Missense_Mutation p.T238M 0.56 tolerated(0.09) possibly_damaging(0.717) TCGA-XK-AAIW-01 1 15813898 15813898 C T CELA2B Missense_Mutation p.T253M 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 158151319 158151319 G A CD1D Missense_Mutation p.G46S 0.32 tolerated(0.13) possibly_damaging(0.471) TCGA-XK-AAIW-01 1 158301201 158301201 G A CD1B Missense_Mutation p.P5S 0.28 tolerated(0.35) unknown(0) TCGA-XK-AAIW-01 1 158390557 158390557 G T OR10K2 Missense_Mutation p.L34I 0.22 tolerated(0.35) benign(0.007) TCGA-XK-AAIW-01 1 158435852 158435852 C A OR10K1 Silent p.P167P 0.12 TCGA-XK-AAIW-01 1 15844776 15844776 C A CASP9 Missense_Mutation p.D83Y 0.37 tolerated(0.24) benign(0.053) TCGA-XK-AAIW-01 1 158548712 158548712 T - OR10X1 Frame_Shift_Del p.K326Nfs*? 0.37 TCGA-XK-AAIW-01 1 158576625 158576625 G A OR10Z1 Missense_Mutation p.A133T 0.41 tolerated(0.99) benign(0.002) TCGA-XK-AAIW-01 1 158617376 158617376 C A SPTA1 Missense_Mutation p.E1283D 0.32 tolerated(0.2) benign(0.039) TCGA-XK-AAIW-01 1 158618332 158618332 G A SPTA1 Silent p.G1227G 0.40 TCGA-XK-AAIW-01 1 158639538 158639538 G A SPTA1 Silent p.D546D 0.41 TCGA-XK-AAIW-01 1 158655080 158655080 G A SPTA1 Missense_Mutation p.R28C 0.44 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 158669921 158669921 T C OR6K2 Silent p.E174E 0.37 TCGA-XK-AAIW-01 1 158670285 158670285 G A OR6K2 Missense_Mutation p.T53I 0.38 tolerated(0.45) benign(0.003) TCGA-XK-AAIW-01 1 158686968 158686968 G T OR6K3 Missense_Mutation p.P313H 0.40 tolerated(0.11) benign(0.139) TCGA-XK-AAIW-01 1 158725070 158725070 C T OR6K6 Silent p.C155C 0.33 TCGA-XK-AAIW-01 1 158725149 158725149 C A OR6K6 Missense_Mutation p.L182I 0.32 tolerated(0.13) benign(0.07) TCGA-XK-AAIW-01 1 158813813 158813813 G A MNDA Silent p.K157K 0.34 TCGA-XK-AAIW-01 1 158984686 158984686 A G IFI16 Missense_Mutation p.I72M 0.34 tolerated(0.34) benign(0.316) TCGA-XK-AAIW-01 1 159162426 159162426 C T CADM3 Silent p.S130S 0.42 TCGA-XK-AAIW-01 1 159175630 159175630 G A DARC Missense_Mutation p.C136Y 0.35 tolerated(0.82) benign(0.002) TCGA-XK-AAIW-01 1 159856423 159856423 C T CCDC19 Silent p.Q215Q 0.39 TCGA-XK-AAIW-01 1 15987989 15987989 C A RSC1A1 Silent p.V542V 0.43 TCGA-XK-AAIW-01 1 159906633 159906633 G T IGSF9 Missense_Mutation p.L156M 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-XK-AAIW-01 1 160098444 160098444 G A ATP1A2 Silent p.V340V 0.16 TCGA-XK-AAIW-01 1 160134088 160134088 C T ATP1A4 Silent p.A307A 0.48 TCGA-XK-AAIW-01 1 160151799 160151799 G A ATP1A4 Missense_Mutation p.A983T 0.47 tolerated(0.05) benign(0.283) TCGA-XK-AAIW-01 1 160309737 160309737 G A COPA Missense_Mutation p.P64S 0.38 deleterious(0) possibly_damaging(0.835) TCGA-XK-AAIW-01 1 160385872 160385872 G A VANGL2 Missense_Mutation p.R31H 0.30 tolerated(0.14) unknown(0) TCGA-XK-AAIW-01 1 160389121 160389121 G A VANGL2 Silent p.S174S 0.44 TCGA-XK-AAIW-01 1 160390904 160390904 C T VANGL2 Missense_Mutation p.R334W 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 160395031 160395031 G A VANGL2 Missense_Mutation p.V477I 0.42 tolerated(0.18) probably_damaging(0.995) TCGA-XK-AAIW-01 1 16046306 16046306 C T PLEKHM2 Silent p.R181R 0.36 TCGA-XK-AAIW-01 1 16053821 16053821 C T PLEKHM2 Silent p.N418N 0.62 TCGA-XK-AAIW-01 1 160681528 160681528 C T CD48 Missense_Mutation p.C9Y 0.41 tolerated(0.36) benign(0.311) TCGA-XK-AAIW-01 1 160769675 160769675 C A LY9 Missense_Mutation p.A86D 0.47 deleterious(0.01) probably_damaging(0.959) TCGA-XK-AAIW-01 1 160801063 160801063 C T CD244 3'UTR 0.37 TCGA-XK-AAIW-01 1 160851031 160851031 C A ITLN1 Missense_Mutation p.Q159H 0.17 tolerated(0.11) possibly_damaging(0.789) TCGA-XK-AAIW-01 1 16101296 16101296 G A FBLIM1 Missense_Mutation p.E299K 0.37 deleterious(0) benign(0.073) TCGA-XK-AAIW-01 1 161017764 161017764 C T ARHGAP30 Missense_Mutation p.R1016Q 0.44 tolerated_low_confidence(0.05) benign(0.011) TCGA-XK-AAIW-01 1 161044461 161044461 C T PVRL4 Missense_Mutation p.V314I 0.39 tolerated(0.43) benign(0.008) TCGA-XK-AAIW-01 1 161133342 161133342 T C USP21 Intron 0.35 TCGA-XK-AAIW-01 1 161137271 161137271 C T PPOX Silent p.G111G 0.27 TCGA-XK-AAIW-01 1 161141751 161141751 G T B4GALT3 Missense_Mutation p.P346H 0.44 deleterious(0) probably_damaging(0.962) TCGA-XK-AAIW-01 1 161165296 161165296 C T ADAMTS4 Missense_Mutation p.C407Y 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 161167892 161167892 G A ADAMTS4 Missense_Mutation p.P176S 0.48 tolerated(0.32) benign(0.197) TCGA-XK-AAIW-01 1 161167913 161167913 T C ADAMTS4 Missense_Mutation p.T169A 0.44 tolerated(0.94) benign(0.001) TCGA-XK-AAIW-01 1 161176272 161176272 G A NDUFS2 Missense_Mutation p.G93D 0.27 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 161183492 161183492 C T NDUFS2 Silent p.C422C 0.14 TCGA-XK-AAIW-01 1 161334734 161334734 C T C1orf192 3'UTR 0.09 TCGA-XK-AAIW-01 1 161789584 161789584 G A ATF6 Silent p.R357R 0.17 TCGA-XK-AAIW-01 1 161954013 161954013 C T OLFML2B Missense_Mutation p.V569M 0.37 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 1 162351690 162351690 G T RP11-565P22.6 Missense_Mutation p.G109V 0.27 tolerated(0.06) possibly_damaging(0.714) TCGA-XK-AAIW-01 1 162381923 162381923 C A SH2D1B 5'Flank 0.33 TCGA-XK-AAIW-01 1 162469789 162469789 C T UHMK1 Missense_Mutation p.P105S 0.22 tolerated(0.57) benign(0.018) TCGA-XK-AAIW-01 1 162469884 162469884 G A UHMK1 Silent p.Q136Q 0.52 TCGA-XK-AAIW-01 1 16255500 16255500 C T SPEN Missense_Mutation p.T922M 0.38 benign(0.006) TCGA-XK-AAIW-01 1 162560256 162560256 G A UAP1 Missense_Mutation p.G438D 0.46 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 16262309 16262309 C T SPEN Missense_Mutation p.P3192S 0.16 probably_damaging(0.995) TCGA-XK-AAIW-01 1 16264445 16264445 G A SPEN Missense_Mutation p.A3550T 0.39 possibly_damaging(0.634) TCGA-XK-AAIW-01 1 16265255 16265255 C T SPEN Missense_Mutation p.R3583C 0.31 probably_damaging(0.995) TCGA-XK-AAIW-01 1 16269097 16269097 G A ZBTB17 Silent p.S655S 0.17 TCGA-XK-AAIW-01 1 16272237 16272237 C T ZBTB17 Missense_Mutation p.A212T 0.37 tolerated_low_confidence(0.25) probably_damaging(0.956) TCGA-XK-AAIW-01 1 162725543 162725543 G A DDR2 Missense_Mutation p.G219R 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 162749928 162749928 T C DDR2 Silent p.C820C 0.42 TCGA-XK-AAIW-01 1 163117105 163117105 G T RGS5 3'UTR 0.29 TCGA-XK-AAIW-01 1 16353830 16353830 G A CLCNKA Missense_Mutation p.M227I 0.19 deleterious(0.04) possibly_damaging(0.465) TCGA-XK-AAIW-01 1 16376334 16376334 C T CLCNKB Silent p.S297S 0.36 TCGA-XK-AAIW-01 1 16377010 16377010 G A CLCNKB Splice_Site p.X323_splice 0.24 TCGA-XK-AAIW-01 1 16461587 16461587 G A EPHA2 Missense_Mutation p.A509V 0.42 tolerated(0.08) benign(0.254) TCGA-XK-AAIW-01 1 164761813 164761813 C T PBX1 Silent p.G116G 0.18 TCGA-XK-AAIW-01 1 164761860 164761860 C T PBX1 Missense_Mutation p.A132V 0.43 tolerated(0.06) probably_damaging(0.929) TCGA-XK-AAIW-01 1 16534187 16534187 G A ARHGEF19 Silent p.G260G 0.42 TCGA-XK-AAIW-01 1 165386316 165386316 C T RXRG Missense_Mutation p.R195H 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 16559499 16559499 G A RSG1 Silent p.T93T 0.34 TCGA-XK-AAIW-01 1 16577179 16577179 G A FBXO42 Nonsense_Mutation p.R714* 0.39 TCGA-XK-AAIW-01 1 16577707 16577707 G A FBXO42 Missense_Mutation p.H538Y 0.31 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-XK-AAIW-01 1 165865434 165865434 G A UCK2 Missense_Mutation p.E122K 0.05 tolerated(0.11) probably_damaging(0.995) TCGA-XK-AAIW-01 1 167097501 167097501 A G DUSP27 Missense_Mutation p.T1045A 0.27 deleterious(0) possibly_damaging(0.459) TCGA-XK-AAIW-01 1 167367303 167367303 G A POU2F1 Missense_Mutation p.R401H 0.14 deleterious(0) unknown(0) TCGA-XK-AAIW-01 1 167410003 167410003 C A CD247 Missense_Mutation p.E20D 0.67 tolerated(0.68) benign(0.004) TCGA-XK-AAIW-01 1 167793914 167793914 T C ADCY10 Silent p.G1310G 0.39 TCGA-XK-AAIW-01 1 16803488 16803488 G A CROCCP3 RNA 0.44 TCGA-XK-AAIW-01 1 168683472 168683472 G A DPT Missense_Mutation p.P140S 0.54 tolerated(0.15) probably_damaging(0.932) TCGA-XK-AAIW-01 1 16895569 16895569 G A NBPF1 Silent p.G871G 0.10 TCGA-XK-AAIW-01 1 16895689 16895689 G A NBPF1 Silent p.S831S 0.11 TCGA-XK-AAIW-01 1 16902810 16902810 C T NBPF1 Missense_Mutation p.A691T 0.05 tolerated(0.19) probably_damaging(0.995) TCGA-XK-AAIW-01 1 169206902 169206902 C T NME7 Missense_Mutation p.A260T 0.22 tolerated(0.49) benign(0.02) TCGA-XK-AAIW-01 1 1693454 1693454 C T NADK Missense_Mutation p.G67E 0.31 deleterious_low_confidence(0.04) probably_damaging(0.972) TCGA-XK-AAIW-01 1 16945454 16945454 G A RP5-1182A14.5 3'Flank 0.12 TCGA-XK-AAIW-01 1 16945623 16945623 G A RP5-1182A14.5 3'Flank 0.07 TCGA-XK-AAIW-01 1 169492481 169492481 T G F5 Missense_Mutation p.Q2001P 0.48 deleterious(0.02) benign(0.395) TCGA-XK-AAIW-01 1 169578832 169578832 G A SELP Missense_Mutation p.R415C 0.30 tolerated(0.11) possibly_damaging(0.764) TCGA-XK-AAIW-01 1 169677595 169677595 G A SELL Silent p.D158D 0.45 TCGA-XK-AAIW-01 1 171085413 171085413 C T FMO3 Missense_Mutation p.R417C 0.27 tolerated(0.05) possibly_damaging(0.601) TCGA-XK-AAIW-01 1 171174642 171174642 C T FMO2 Missense_Mutation p.S351L 0.36 tolerated(0.08) benign(0.038) TCGA-XK-AAIW-01 1 171251207 171251207 A G FMO1 Silent p.V306V 0.46 TCGA-XK-AAIW-01 1 171556249 171556249 C T PRRC2C Silent p.T2617T 0.38 TCGA-XK-AAIW-01 1 171605301 171605301 C T MYOC Missense_Mutation p.A427T 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 171956817 171956817 G A DNM3 Missense_Mutation p.C86Y 0.23 tolerated(0.12) probably_damaging(0.978) TCGA-XK-AAIW-01 1 172411474 172411474 A G PIGC Missense_Mutation p.Y97H 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 17322461 17322461 G A ATP13A2 Intron 0.46 TCGA-XK-AAIW-01 1 17322788 17322788 G A ATP13A2 Silent p.L438L 0.38 TCGA-XK-AAIW-01 1 17349119 17349119 G A SDHB Missense_Mutation p.T250I 0.46 deleterious(0.01) possibly_damaging(0.9) TCGA-XK-AAIW-01 1 173876636 173876636 G A SERPINC1 Silent p.G390G 0.08 TCGA-XK-AAIW-01 1 173878765 173878765 C T SERPINC1 Missense_Mutation p.G360S 0.30 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 1 173879931 173879931 C A SERPINC1 Missense_Mutation p.E241D 0.48 tolerated(0.74) benign(0) TCGA-XK-AAIW-01 1 173910517 173910517 T C RC3H1 Missense_Mutation p.E1046G 0.12 deleterious_low_confidence(0.01) benign(0.113) TCGA-XK-AAIW-01 1 17410236 17410236 G A PADI2 Silent p.G345G 0.46 TCGA-XK-AAIW-01 1 174190300 174190300 C T RABGAP1L Missense_Mutation p.T110I 0.31 tolerated(0.29) benign(0.09) TCGA-XK-AAIW-01 1 175105005 175105005 C T TNN Nonsense_Mutation p.Q1119* 0.48 TCGA-XK-AAIW-01 1 176054920 176054920 C T RFWD2 Missense_Mutation p.R378H 0.29 tolerated(0.14) benign(0.003) TCGA-XK-AAIW-01 1 17701957 17701957 C T PADI6 RNA 0.33 TCGA-XK-AAIW-01 1 177250177 177250177 C T BRINP2 Missense_Mutation p.A622V 0.34 tolerated(0.5) benign(0.079) TCGA-XK-AAIW-01 1 177250404 177250404 C T BRINP2 Missense_Mutation p.R698W 0.33 deleterious(0) probably_damaging(0.936) TCGA-XK-AAIW-01 1 177250451 177250451 G A BRINP2 Silent p.Q713Q 0.24 TCGA-XK-AAIW-01 1 17727705 17727705 G A PADI6 RNA 0.52 TCGA-XK-AAIW-01 1 177902750 177902750 G T SEC16B Silent p.R865R 0.30 TCGA-XK-AAIW-01 1 178420766 178420766 G A RASAL2 Missense_Mutation p.C563Y 0.48 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 17949514 17949514 G T ARHGEF10L Missense_Mutation p.E348D 0.40 tolerated(0.12) benign(0.101) TCGA-XK-AAIW-01 1 17952504 17952504 G A ARHGEF10L Silent p.K457K 0.30 TCGA-XK-AAIW-01 1 179820144 179820144 G A TOR1AIP2 Missense_Mutation p.A130V 0.37 tolerated_low_confidence(0.12) benign(0.031) TCGA-XK-AAIW-01 1 179985037 179985037 G C CEP350 Missense_Mutation p.Q702H 0.29 probably_damaging(0.999) TCGA-XK-AAIW-01 1 179989380 179989380 G A CEP350 Missense_Mutation p.R824H 0.34 benign(0.176) TCGA-XK-AAIW-01 1 179990054 179990054 C T CEP350 Nonsense_Mutation p.Q1049* 0.38 TCGA-XK-AAIW-01 1 179991872 179991872 G T CEP350 Missense_Mutation p.R1092L 0.13 benign(0.217) TCGA-XK-AAIW-01 1 180003188 180003188 C T CEP350 Missense_Mutation p.T1306I 0.25 benign(0.001) TCGA-XK-AAIW-01 1 180044193 180044193 G T CEP350 Silent p.R1868R 0.50 TCGA-XK-AAIW-01 1 180061797 180061797 C T CEP350 Missense_Mutation p.S2186F 0.36 benign(0.033) TCGA-XK-AAIW-01 1 180235529 180235529 G A LHX4 Missense_Mutation p.R84H 0.43 deleterious(0) benign(0.187) TCGA-XK-AAIW-01 1 180905307 180905307 G A KIAA1614 Silent p.T754T 0.15 TCGA-XK-AAIW-01 1 181684513 181684513 C T CACNA1E Missense_Mutation p.T404I 0.50 tolerated(0.08) possibly_damaging(0.507) TCGA-XK-AAIW-01 1 181686338 181686338 C T CACNA1E Silent p.S475S 0.44 TCGA-XK-AAIW-01 1 181706764 181706764 G A CACNA1E Missense_Mutation p.V1176I 0.44 tolerated(0.07) benign(0.369) TCGA-XK-AAIW-01 1 182027061 182027061 G A ZNF648 Silent p.L29L 0.38 TCGA-XK-AAIW-01 1 182555276 182555276 C T RNASEL Silent p.T222T 0.39 TCGA-XK-AAIW-01 1 182555596 182555596 C T RNASEL Missense_Mutation p.A116T 0.39 tolerated(0.14) possibly_damaging(0.496) TCGA-XK-AAIW-01 1 183510217 183510217 G T SMG7 Missense_Mutation p.W465L 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-XK-AAIW-01 1 183853014 183853014 C T RGL1 Silent p.L270L 0.12 TCGA-XK-AAIW-01 1 183861295 183861295 G T RGL1 Missense_Mutation p.K415N 0.16 deleterious(0) probably_damaging(0.96) TCGA-XK-AAIW-01 1 183938608 183938608 C A COLGALT2 Splice_Site p.X210_splice 0.33 TCGA-XK-AAIW-01 1 184675822 184675822 C T EDEM3 Missense_Mutation p.A720T 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 1 184692925 184692925 G A EDEM3 Silent p.G271G 0.42 TCGA-XK-AAIW-01 1 184695464 184695464 G T EDEM3 Silent p.T224T 0.40 TCGA-XK-AAIW-01 1 184772813 184772813 T C FAM129A Missense_Mutation p.D487G 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 184775093 184775093 A G FAM129A Missense_Mutation p.L478P 0.14 tolerated(0.11) benign(0.26) TCGA-XK-AAIW-01 1 185259918 185259918 C T SWT1 Missense_Mutation p.L896F 0.34 tolerated_low_confidence(0.23) benign(0.024) TCGA-XK-AAIW-01 1 185269591 185269591 C T IVNS1ABP Missense_Mutation p.R407Q 0.32 tolerated(0.1) probably_damaging(0.999) TCGA-XK-AAIW-01 1 185703900 185703900 A - HMCN1 5'UTR 0.39 TCGA-XK-AAIW-01 1 185894194 185894194 C T HMCN1 Missense_Mutation p.T434M 0.59 benign(0.299) TCGA-XK-AAIW-01 1 186143767 186143767 C A HMCN1 Silent p.P5312P 0.50 TCGA-XK-AAIW-01 1 186276233 186276233 C T PRG4 Missense_Mutation p.P461L 0.38 unknown(0) TCGA-XK-AAIW-01 1 186304524 186304524 C T TPR Silent p.E1619E 0.12 TCGA-XK-AAIW-01 1 186326648 186326648 C A TPR Missense_Mutation p.Q535H 0.44 benign(0.216) TCGA-XK-AAIW-01 1 186332113 186332113 C T TPR Silent p.E184E 0.39 TCGA-XK-AAIW-01 1 186646006 186646006 G A PTGS2 Missense_Mutation p.R228C 0.36 deleterious(0.01) possibly_damaging(0.717) TCGA-XK-AAIW-01 1 186648454 186648454 G A PTGS2 Missense_Mutation p.P57S 0.43 tolerated(0.06) benign(0.395) TCGA-XK-AAIW-01 1 18692021 18692021 A G IGSF21 Missense_Mutation p.E282G 0.41 deleterious(0.02) benign(0.314) TCGA-XK-AAIW-01 1 186934587 186934588 - A PLA2G4A Frame_Shift_Ins p.I545Dfs*11 0.32 TCGA-XK-AAIW-01 1 18807720 18807720 G A KLHDC7A Missense_Mutation p.R82H 0.38 tolerated(0.08) benign(0.021) TCGA-XK-AAIW-01 1 190068210 190068210 G A BRINP3 Silent p.N413N 0.27 TCGA-XK-AAIW-01 1 19181437 19181437 C T TAS1R2 Missense_Mutation p.R176H 0.23 tolerated(0.23) benign(0.077) TCGA-XK-AAIW-01 1 19204062 19204062 C T ALDH4A1 Missense_Mutation p.V329M 0.27 deleterious(0.01) probably_damaging(0.939) TCGA-XK-AAIW-01 1 192628557 192628557 C T RGS13 Silent p.V128V 0.62 TCGA-XK-AAIW-01 1 193045659 193045659 C T TROVE2 Missense_Mutation p.P277L 0.32 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 1 193094340 193094340 G A CDC73 Missense_Mutation p.R77H 0.35 tolerated(0.11) benign(0.023) TCGA-XK-AAIW-01 1 19559589 19559589 C T EMC1 Silent p.Q491Q 0.33 TCGA-XK-AAIW-01 1 196285152 196285152 C A KCNT2 Missense_Mutation p.D785Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 19632609 19632609 G A AKR7A2 Missense_Mutation p.A274V 0.16 tolerated(0.08) benign(0.119) TCGA-XK-AAIW-01 1 196659286 196659286 C T CFH Missense_Mutation p.P418L 0.33 deleterious(0.04) benign(0.209) TCGA-XK-AAIW-01 1 196682946 196682946 C T CFH Missense_Mutation p.A473V 0.29 tolerated(0.15) benign(0.006) TCGA-XK-AAIW-01 1 196759314 196759314 A G CFHR3 Silent p.V251V 0.79 TCGA-XK-AAIW-01 1 196963273 196963273 A G CFHR5 Missense_Mutation p.Y165C 0.38 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 1 196977815 196977815 G A CFHR5 3'UTR 0.30 TCGA-XK-AAIW-01 1 197009752 197009752 C A F13B Nonsense_Mutation p.G618* 0.38 TCGA-XK-AAIW-01 1 197030913 197030913 C T F13B Splice_Site p.X151_splice 0.43 TCGA-XK-AAIW-01 1 197091131 197091131 C T ASPM Missense_Mutation p.D1262N 0.45 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 1 197611872 197611872 C T DENND1B Missense_Mutation p.R214H 0.38 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 1 19775361 19775361 G A CAPZB Intron 0.39 TCGA-XK-AAIW-01 1 19775442 19775442 G A CAPZB Intron 0.27 TCGA-XK-AAIW-01 1 200377419 200377419 C T ZNF281 Missense_Mutation p.R472K 0.41 tolerated(0.13) probably_damaging(0.97) TCGA-XK-AAIW-01 1 200377605 200377605 C T ZNF281 Missense_Mutation p.S410N 0.35 tolerated(0.42) benign(0.001) TCGA-XK-AAIW-01 1 200880619 200880619 G A C1orf106 Missense_Mutation p.R333H 0.44 deleterious(0.05) benign(0.024) TCGA-XK-AAIW-01 1 200953989 200953989 G C KIF21B Missense_Mutation p.D1267E 0.47 tolerated(0.17) probably_damaging(0.978) TCGA-XK-AAIW-01 1 200961481 200961481 G A KIF21B Missense_Mutation p.R772W 0.42 deleterious(0) probably_damaging(0.974) TCGA-XK-AAIW-01 1 201291157 201291157 G A PKP1 Missense_Mutation p.A488T 0.17 tolerated(0.3) benign(0.005) TCGA-XK-AAIW-01 1 201292200 201292200 G A PKP1 Nonsense_Mutation p.W542* 0.46 TCGA-XK-AAIW-01 1 201342457 201342457 C A TNNT2 5'UTR 0.22 TCGA-XK-AAIW-01 1 201356061 201356061 C T LAD1 Missense_Mutation p.R143H 0.27 tolerated(0.09) benign(0.187) TCGA-XK-AAIW-01 1 20141347 20141347 G A RNF186 Missense_Mutation p.P83L 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 201835898 201835898 G A IPO9 Missense_Mutation p.V556M 0.40 tolerated(0.24) benign(0.075) TCGA-XK-AAIW-01 1 201972553 201972553 C T RNPEP Silent p.L539L 0.42 TCGA-XK-AAIW-01 1 202124675 202124675 C T PTPN7 Missense_Mutation p.A257T 0.30 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 202127379 202127379 A G PTPN7 Missense_Mutation p.V163A 0.12 tolerated(0.06) probably_damaging(0.978) TCGA-XK-AAIW-01 1 202128422 202128422 G A PTPN7 Nonsense_Mutation p.R142* 0.47 TCGA-XK-AAIW-01 1 202128602 202128602 G A PTPN7 Intron 0.32 TCGA-XK-AAIW-01 1 20220882 20220882 G A OTUD3 Missense_Mutation p.G131D 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 202287631 202287631 G A LGR6 Missense_Mutation p.V734M 0.38 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 1 202710525 202710525 T C KDM5B Missense_Mutation p.D972G 0.33 deleterious(0) possibly_damaging(0.673) TCGA-XK-AAIW-01 1 202880299 202880299 G A KLHL12 Silent p.V200V 0.35 TCGA-XK-AAIW-01 1 202910745 202910745 G A ADIPOR1 Missense_Mutation p.R362C 0.14 deleterious(0.04) possibly_damaging(0.507) TCGA-XK-AAIW-01 1 202984027 202984027 C T TMEM183A Silent p.D126D 0.37 TCGA-XK-AAIW-01 1 203020974 203020974 G A PPFIA4 Missense_Mutation p.R24H 0.25 deleterious(0.05) benign(0.017) TCGA-XK-AAIW-01 1 203025990 203025990 G T PPFIA4 Missense_Mutation p.K267N 0.44 deleterious(0) possibly_damaging(0.824) TCGA-XK-AAIW-01 1 203098231 203098231 C A ADORA1 Missense_Mutation p.L88I 0.42 tolerated(0.06) probably_damaging(0.921) TCGA-XK-AAIW-01 1 203186921 203186921 A T CHIT1 Missense_Mutation p.F368I 0.43 deleterious(0.04) benign(0.008) TCGA-XK-AAIW-01 1 203311434 203311434 C T FMOD 3'UTR 0.26 TCGA-XK-AAIW-01 1 203311497 203311497 G A FMOD Missense_Mutation p.R369C 0.25 deleterious(0.02) benign(0.038) TCGA-XK-AAIW-01 1 203680202 203680202 C T ATP2B4 Missense_Mutation p.A666V 0.44 deleterious(0.02) benign(0.043) TCGA-XK-AAIW-01 1 203743159 203743159 G A LAX1 Missense_Mutation p.A183T 0.46 tolerated(0.69) benign(0) TCGA-XK-AAIW-01 1 20412585 20412585 C T PLA2G5 Missense_Mutation p.A17V 0.38 tolerated(0.19) benign(0.011) TCGA-XK-AAIW-01 1 204161932 204161932 C T KISS1 Missense_Mutation p.V25M 0.47 tolerated(0.37) benign(0.024) TCGA-XK-AAIW-01 1 204397287 204397287 C T PIK3C2B Missense_Mutation p.S1487N 0.50 tolerated(0.63) benign(0.001) TCGA-XK-AAIW-01 1 204403686 204403686 G A PIK3C2B Silent p.Y1189Y 0.15 TCGA-XK-AAIW-01 1 204434354 204434354 G C PIK3C2B Missense_Mutation p.L343V 0.44 tolerated(0.45) probably_damaging(0.942) TCGA-XK-AAIW-01 1 204434416 204434416 C T PIK3C2B Missense_Mutation p.G322D 0.30 deleterious(0.04) probably_damaging(0.937) TCGA-XK-AAIW-01 1 204586851 204586851 G A LRRN2 3'UTR 0.33 TCGA-XK-AAIW-01 1 204966414 204966414 G A NFASC Missense_Mutation p.A967T 0.73 tolerated(0.63) unknown(0) TCGA-XK-AAIW-01 1 205116859 205116859 G A DSTYK Missense_Mutation p.R873C 0.45 deleterious(0) possibly_damaging(0.884) TCGA-XK-AAIW-01 1 205156702 205156702 C T DSTYK Silent p.A166A 0.35 TCGA-XK-AAIW-01 1 205388421 205388421 C T LEMD1 Missense_Mutation p.A48T 0.56 tolerated(0.22) possibly_damaging(0.483) TCGA-XK-AAIW-01 1 205495959 205495959 C T CDK18 Silent p.N271N 0.33 TCGA-XK-AAIW-01 1 205569640 205569640 C T MFSD4 3'UTR 0.44 TCGA-XK-AAIW-01 1 205899137 205899137 G A SLC26A9 Silent p.S200S 0.54 TCGA-XK-AAIW-01 1 206225087 206225087 C T AVPR1B Missense_Mutation p.T216M 0.53 tolerated(0.13) possibly_damaging(0.835) TCGA-XK-AAIW-01 1 206782805 206782805 C T EIF2D Silent p.T85T 0.14 TCGA-XK-AAIW-01 1 206821277 206821277 G A DYRK3 Missense_Mutation p.R245H 0.39 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 1 206821761 206821761 G T DYRK3 Missense_Mutation p.Q406H 0.34 tolerated(0.06) probably_damaging(0.996) TCGA-XK-AAIW-01 1 206906129 206906129 C T MAPKAPK2 3'UTR 0.33 TCGA-XK-AAIW-01 1 206944258 206944258 C T IL10 Silent p.R124R 0.40 TCGA-XK-AAIW-01 1 206944740 206944740 G A IL10 Silent p.D62D 0.70 TCGA-XK-AAIW-01 1 206972299 206972299 G A IL19 Silent p.V20V 0.35 TCGA-XK-AAIW-01 1 207073659 207073659 C T IL24 Missense_Mutation p.T88M 0.40 tolerated(0.09) benign(0.108) TCGA-XK-AAIW-01 1 207103654 207103654 C T PIGR 3'UTR 0.36 TCGA-XK-AAIW-01 1 207106341 207106341 C T PIGR Missense_Mutation p.D626N 0.18 tolerated(0.13) benign(0.037) TCGA-XK-AAIW-01 1 207135710 207135710 C T FCAMR Missense_Mutation p.R167H 0.19 tolerated(0.39) benign(0.013) TCGA-XK-AAIW-01 1 207640140 207640140 C T CR2 Missense_Mutation p.H110Y 0.21 tolerated(0.05) benign(0.294) TCGA-XK-AAIW-01 1 207925431 207925431 A G CD46 5'UTR 0.19 TCGA-XK-AAIW-01 1 208215586 208215586 G A PLXNA2 Silent p.R1381R 0.55 TCGA-XK-AAIW-01 1 208216471 208216471 G A PLXNA2 Missense_Mutation p.R1318C 0.43 tolerated(0.05) probably_damaging(0.995) TCGA-XK-AAIW-01 1 20827309 20827309 G T MUL1 Silent p.S311S 0.41 TCGA-XK-AAIW-01 1 20828657 20828657 C T MUL1 Silent p.T78T 0.07 TCGA-XK-AAIW-01 1 209785232 209785232 G A CAMK1G Silent p.P337P 0.37 TCGA-XK-AAIW-01 1 209791800 209791800 G A LAMB3 Missense_Mutation p.A969V 0.12 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 20982022 20982022 C T DDOST Silent p.T171T 0.21 TCGA-XK-AAIW-01 1 210024741 210024741 G T DIEXF Missense_Mutation p.Q740H 0.40 tolerated(0.1) benign(0.161) TCGA-XK-AAIW-01 1 210267703 210267703 T C SYT14 Missense_Mutation p.L205P 0.47 deleterious(0.05) benign(0.099) TCGA-XK-AAIW-01 1 210415061 210415061 C T SERTAD4 Silent p.C150C 0.41 TCGA-XK-AAIW-01 1 210591653 210591653 C T HHAT Silent p.V281V 0.09 TCGA-XK-AAIW-01 1 210847634 210847634 G A HHAT Nonsense_Mutation p.W466* 0.51 TCGA-XK-AAIW-01 1 210857205 210857205 C T KCNH1 Silent p.T796T 0.40 TCGA-XK-AAIW-01 1 210971047 210971047 C T KCNH1 Missense_Mutation p.R573H 0.10 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 1 21143947 21143947 G A EIF4G3 Nonsense_Mutation p.R1435* 0.42 TCGA-XK-AAIW-01 1 2116391 2116391 G A PRKCZ Silent p.E574E 0.73 TCGA-XK-AAIW-01 1 21181537 21181537 C T EIF4G3 Missense_Mutation p.V1073I 0.14 tolerated(0.27) benign(0.024) TCGA-XK-AAIW-01 1 212115317 212115317 G A INTS7 Missense_Mutation p.A913V 0.33 tolerated(0.17) benign(0.02) TCGA-XK-AAIW-01 1 212520718 212520718 G A PPP2R5A Missense_Mutation p.G245D 0.24 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 1 212788505 212788505 G A ATF3 Missense_Mutation p.A48T 0.41 tolerated(0.22) benign(0.039) TCGA-XK-AAIW-01 1 212799339 212799339 G T FAM71A Nonsense_Mutation p.G374* 0.26 TCGA-XK-AAIW-01 1 213178540 213178540 C T ANGEL2 Silent p.T323T 0.24 TCGA-XK-AAIW-01 1 214170503 214170503 C T PROX1 Missense_Mutation p.R209C 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 214171121 214171121 G A PROX1 Missense_Mutation p.V415I 0.27 tolerated(0.06) probably_damaging(0.964) TCGA-XK-AAIW-01 1 214504374 214504374 A G SMYD2 Missense_Mutation p.N300D 0.42 tolerated(0.27) benign(0) TCGA-XK-AAIW-01 1 214638210 214638210 C T PTPN14 5'UTR 0.38 TCGA-XK-AAIW-01 1 214819539 214819539 G T CENPF Missense_Mutation p.R2209M 0.34 possibly_damaging(0.799) TCGA-XK-AAIW-01 1 214826195 214826195 C T CENPF Nonsense_Mutation p.R2729* 0.13 TCGA-XK-AAIW-01 1 21571562 21571562 G A ECE1 Missense_Mutation p.R400W 0.32 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 215802302 215802302 G A USH2A Missense_Mutation p.R5125C 0.39 benign(0.033) TCGA-XK-AAIW-01 1 215813957 215813957 G A USH2A Nonsense_Mutation p.R4971* 0.14 TCGA-XK-AAIW-01 1 215848230 215848230 G A USH2A Silent p.C4341C 0.08 TCGA-XK-AAIW-01 1 215987212 215987212 G T USH2A Missense_Mutation p.P3202H 0.23 probably_damaging(0.927) TCGA-XK-AAIW-01 1 216062234 216062234 G A USH2A Missense_Mutation p.T2586I 0.45 benign(0.261) TCGA-XK-AAIW-01 1 216074111 216074111 G A USH2A Silent p.T2479T 0.38 TCGA-XK-AAIW-01 1 216371664 216371664 T C USH2A Silent p.G1358G 0.38 TCGA-XK-AAIW-01 1 216850735 216850735 C T ESRRG Missense_Mutation p.S57N 0.29 tolerated(0.14) benign(0.121) TCGA-XK-AAIW-01 1 21795389 21795389 C T NBPF3 Silent p.Y114Y 0.35 TCGA-XK-AAIW-01 1 21924989 21924989 C T RAP1GAP Missense_Mutation p.V659M 0.16 tolerated(0.23) benign(0.018) TCGA-XK-AAIW-01 1 21935361 21935361 C T RAP1GAP Silent p.E444E 0.35 TCGA-XK-AAIW-01 1 220142071 220142071 G A EPRS 3'UTR 0.45 TCGA-XK-AAIW-01 1 220156131 220156131 C T EPRS Missense_Mutation p.R1119H 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 220363470 220363470 T C RAB3GAP2 Silent p.R550R 0.48 TCGA-XK-AAIW-01 1 221057870 221057870 G A HLX Missense_Mutation p.G431S 0.47 tolerated_low_confidence(0.41) benign(0) TCGA-XK-AAIW-01 1 221057957 221057957 G A HLX Missense_Mutation p.A460T 0.50 tolerated_low_confidence(0.76) benign(0.001) TCGA-XK-AAIW-01 1 22140900 22140900 C T LDLRAD2 Missense_Mutation p.A32V 0.52 tolerated(1) unknown(0) TCGA-XK-AAIW-01 1 22161368 22161368 G A HSPG2 Silent p.F3508F 0.16 TCGA-XK-AAIW-01 1 22167685 22167685 C T HSPG2 Missense_Mutation p.R3141H 0.35 benign(0.178) TCGA-XK-AAIW-01 1 22174233 22174233 C A HSPG2 Missense_Mutation p.Q2658H 0.50 possibly_damaging(0.874) TCGA-XK-AAIW-01 1 22179484 22179484 G A HSPG2 Silent p.C2173C 0.45 TCGA-XK-AAIW-01 1 22192252 22192252 G A HSPG2 Silent p.G1424G 0.25 TCGA-XK-AAIW-01 1 223566990 223566990 G A C1orf65 Missense_Mutation p.C58Y 0.47 deleterious(0) benign(0.032) TCGA-XK-AAIW-01 1 223943318 223943318 G T CAPN2 Missense_Mutation p.E424D 0.17 tolerated(0.13) benign(0.002) TCGA-XK-AAIW-01 1 223962541 223962541 C A CAPN2 Silent p.L695L 0.36 TCGA-XK-AAIW-01 1 223991909 223991909 C T TP53BP2 Missense_Mutation p.V206M 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 224377662 224377662 G A DEGS1 Missense_Mutation p.A156T 0.42 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 1 22446662 22446662 G A WNT4 Missense_Mutation p.R313C 0.52 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 224482013 224482013 G A NVL Silent p.D427D 0.37 TCGA-XK-AAIW-01 1 226075694 226075694 G A LEFTY1 Missense_Mutation p.H97Y 0.36 tolerated(0.13) possibly_damaging(0.624) TCGA-XK-AAIW-01 1 226109966 226109966 C T RP4-559A3.7 Missense_Mutation p.V86M 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.701) TCGA-XK-AAIW-01 1 227083146 227083146 C T PSEN2 Silent p.L405L 0.44 TCGA-XK-AAIW-01 1 227149094 227149094 C T ADCK3 Missense_Mutation p.A3V 0.14 tolerated_low_confidence(0.09) benign(0.004) TCGA-XK-AAIW-01 1 227920225 227920225 G A JMJD4 Silent p.R420R 0.47 TCGA-XK-AAIW-01 1 228003511 228003511 G A PRSS38 Missense_Mutation p.A32T 0.63 deleterious(0.02) unknown(0) TCGA-XK-AAIW-01 1 228109686 228109686 C T WNT9A Missense_Mutation p.V211M 0.49 tolerated(0.15) probably_damaging(0.976) TCGA-XK-AAIW-01 1 228285129 228285129 C T ARF1 Missense_Mutation p.R79C 0.44 deleterious_low_confidence(0.01) benign(0.006) TCGA-XK-AAIW-01 1 228345726 228345726 G A GJC2 Silent p.T89T 0.28 TCGA-XK-AAIW-01 1 228345790 228345790 C T GJC2 Missense_Mutation p.R111C 0.81 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 1 228404812 228404812 G A OBSCN Missense_Mutation p.V826I 0.43 benign(0.053) TCGA-XK-AAIW-01 1 228412316 228412316 G A OBSCN Missense_Mutation p.C1029Y 0.39 benign(0.126) TCGA-XK-AAIW-01 1 228444550 228444550 A G OBSCN Missense_Mutation p.Q1595R 0.37 probably_damaging(0.94) TCGA-XK-AAIW-01 1 228462350 228462350 G A OBSCN Missense_Mutation p.V2296M 0.32 probably_damaging(0.988) TCGA-XK-AAIW-01 1 228466411 228466411 G A OBSCN Missense_Mutation p.R2723H 0.22 probably_damaging(0.968) TCGA-XK-AAIW-01 1 228547486 228547486 C T OBSCN Intron 0.29 TCGA-XK-AAIW-01 1 2288909 2288909 G A MORN1 Missense_Mutation p.A333V 0.11 tolerated(0.17) benign(0.017) TCGA-XK-AAIW-01 1 22902839 22902839 G A EPHA8 Missense_Mutation p.V97I 0.28 tolerated(1) benign(0.106) TCGA-XK-AAIW-01 1 229667480 229667480 T C ABCB10 Splice_Site p.X447_splice 0.46 TCGA-XK-AAIW-01 1 229730363 229730363 G A TAF5L Missense_Mutation p.A484V 0.36 tolerated(0.08) possibly_damaging(0.694) TCGA-XK-AAIW-01 1 229730823 229730823 C T TAF5L Missense_Mutation p.A331T 0.29 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 1 229737873 229737873 G A TAF5L Intron 0.42 TCGA-XK-AAIW-01 1 229771763 229771763 G A URB2 Missense_Mutation p.R468Q 0.05 deleterious(0.05) benign(0.032) TCGA-XK-AAIW-01 1 22987584 22987584 G A C1QB Missense_Mutation p.R156H 0.21 deleterious(0.01) probably_damaging(0.939) TCGA-XK-AAIW-01 1 22987926 22987926 C T C1QB 3'UTR 0.29 TCGA-XK-AAIW-01 1 230372099 230372099 C T GALNT2 Silent p.S158S 0.19 TCGA-XK-AAIW-01 1 230461129 230461129 G A PGBD5 Missense_Mutation p.P367S 0.39 tolerated(0.05) benign(0.093) TCGA-XK-AAIW-01 1 230805102 230805102 C T COG2 Missense_Mutation p.R199C 0.17 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 230845754 230845754 G A AGT Silent p.Y281Y 0.38 TCGA-XK-AAIW-01 1 231067184 231067184 C T TTC13 Missense_Mutation p.C387Y 0.41 deleterious(0) benign(0.013) TCGA-XK-AAIW-01 1 231132996 231132996 C T ARV1 Missense_Mutation p.S268F 0.38 tolerated_low_confidence(0.06) benign(0.429) TCGA-XK-AAIW-01 1 231339665 231339665 C T TRIM67 Silent p.S529S 0.44 TCGA-XK-AAIW-01 1 231396268 231396268 C A GNPAT Missense_Mutation p.L93I 0.36 tolerated(0.16) benign(0.003) TCGA-XK-AAIW-01 1 231471746 231471746 C T EXOC8 Silent p.T582T 0.15 TCGA-XK-AAIW-01 1 231858398 231858398 G A DISC1 Intron 0.39 TCGA-XK-AAIW-01 1 232564227 232564227 A G SIPA1L2 Missense_Mutation p.V1447A 0.41 tolerated(0.63) benign(0.314) TCGA-XK-AAIW-01 1 233353643 233353643 A G PCNXL2 Splice_Site p.X897_splice 0.36 TCGA-XK-AAIW-01 1 233482357 233482357 C T MLK4 Silent p.S325S 0.41 TCGA-XK-AAIW-01 1 233802347 233802347 G A KCNK1 Missense_Mutation p.G121D 0.58 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 23397787 23397787 C T KDM1A Missense_Mutation p.P495S 0.47 tolerated(0.18) benign(0.027) TCGA-XK-AAIW-01 1 2340272 2340272 G A PEX10 Silent p.Y73Y 0.29 TCGA-XK-AAIW-01 1 23417825 23417825 C A LUZP1 Missense_Mutation p.R977M 0.41 deleterious(0) possibly_damaging(0.878) TCGA-XK-AAIW-01 1 23417973 23417973 G A LUZP1 Nonsense_Mutation p.R928* 0.38 TCGA-XK-AAIW-01 1 234367480 234367480 C T SLC35F3 Nonsense_Mutation p.R201* 0.42 TCGA-XK-AAIW-01 1 234534276 234534276 G A TARBP1 Silent p.R1365R 0.62 TCGA-XK-AAIW-01 1 234536927 234536927 C A TARBP1 Missense_Mutation p.E1357D 0.39 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 1 234556542 234556542 T G TARBP1 Missense_Mutation p.K1154T 0.33 deleterious(0) benign(0.367) TCGA-XK-AAIW-01 1 234561461 234561461 G A TARBP1 Silent p.H1134H 0.50 TCGA-XK-AAIW-01 1 23520001 23520001 G A HTR1D Missense_Mutation p.R238C 0.18 deleterious(0) probably_damaging(0.976) TCGA-XK-AAIW-01 1 235301420 235301420 C T RBM34 Silent p.T257T 0.39 TCGA-XK-AAIW-01 1 235345271 235345271 G T ARID4B Missense_Mutation p.P988H 0.13 deleterious_low_confidence(0.03) benign(0.305) TCGA-XK-AAIW-01 1 235622019 235622019 T C B3GALNT2 Missense_Mutation p.E306G 0.12 deleterious(0.05) probably_damaging(0.986) TCGA-XK-AAIW-01 1 235944227 235944227 G A LYST Nonsense_Mutation p.R1718* 0.10 TCGA-XK-AAIW-01 1 235964219 235964220 - A LYST Frame_Shift_Ins p.L1297Ffs*5 0.37 TCGA-XK-AAIW-01 1 236195715 236195715 C A NID1 Missense_Mutation p.G508V 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 236399568 236399568 C A ERO1LB Intron 0.29 TCGA-XK-AAIW-01 1 236746392 236746392 G A HEATR1 Silent p.A782A 0.39 TCGA-XK-AAIW-01 1 23688553 23688553 G A ZNF436 Missense_Mutation p.T441M 0.47 tolerated(0.06) probably_damaging(0.954) TCGA-XK-AAIW-01 1 23689057 23689057 G A ZNF436 Missense_Mutation p.T273M 0.40 deleterious(0) probably_damaging(0.955) TCGA-XK-AAIW-01 1 236900481 236900481 G A ACTN2 Silent p.R281R 0.37 TCGA-XK-AAIW-01 1 236902770 236902770 C T ACTN2 Nonsense_Mutation p.Q349* 0.50 TCGA-XK-AAIW-01 1 23735189 23735189 G T TCEA3 Silent p.A137A 0.31 TCGA-XK-AAIW-01 1 238048881 238048881 C T ZP4 Splice_Site p.X324_splice 0.44 TCGA-XK-AAIW-01 1 238053225 238053225 C T ZP4 Silent p.A114A 0.35 TCGA-XK-AAIW-01 1 240070781 240070781 G A CHRM3 Silent p.S10S 0.31 TCGA-XK-AAIW-01 1 240072217 240072217 C T CHRM3 Missense_Mutation p.A489V 0.41 deleterious(0) possibly_damaging(0.692) TCGA-XK-AAIW-01 1 240371408 240371408 C T FMN2 Missense_Mutation p.P1099L 0.27 unknown(0) TCGA-XK-AAIW-01 1 240371758 240371758 G A FMN2 Missense_Mutation p.G1216R 0.33 unknown(0) TCGA-XK-AAIW-01 1 240372032 240372032 G T FMN2 Missense_Mutation p.R1307I 0.33 benign(0.387) TCGA-XK-AAIW-01 1 240656719 240656719 C T GREM2 Silent p.A19A 0.38 TCGA-XK-AAIW-01 1 241033418 241033418 G A RGS7 Silent p.A129A 0.41 TCGA-XK-AAIW-01 1 24120858 24120858 C A LYPLA2 Intron 0.40 TCGA-XK-AAIW-01 1 24122731 24122731 G A GALE Missense_Mutation p.R300W 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 24147063 24147063 G C HMGCL Silent p.G27G 0.29 TCGA-XK-AAIW-01 1 241665775 241665775 G A FH Missense_Mutation p.H402Y 0.28 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 1 241767567 241767567 G A OPN3 Nonsense_Mutation p.R230* 0.41 TCGA-XK-AAIW-01 1 241767744 241767744 C A OPN3 Missense_Mutation p.A171S 0.41 tolerated(0.24) benign(0.3) TCGA-XK-AAIW-01 1 241767867 241767867 C T OPN3 Missense_Mutation p.A130T 0.43 tolerated(0.78) benign(0.002) TCGA-XK-AAIW-01 1 24180991 24180991 G T FUCA1 Nonsense_Mutation p.Y276* 0.44 TCGA-XK-AAIW-01 1 2419141 2419141 G A PLCH2 Missense_Mutation p.A380T 0.47 deleterious(0.01) possibly_damaging(0.462) TCGA-XK-AAIW-01 1 242159540 242159540 C A MAP1LC3C Missense_Mutation p.E123D 0.38 deleterious(0.04) benign(0.362) TCGA-XK-AAIW-01 1 242159571 242159571 C A MAP1LC3C Missense_Mutation p.G113V 0.32 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 1 243303262 243303262 G A CEP170 Missense_Mutation p.R1403W 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 243328145 243328145 A G CEP170 Silent p.I1039I 0.28 TCGA-XK-AAIW-01 1 243328363 243328363 A G CEP170 Missense_Mutation p.C967R 0.26 deleterious(0.01) possibly_damaging(0.866) TCGA-XK-AAIW-01 1 243329090 243329090 G T CEP170 Missense_Mutation p.S724R 0.38 deleterious(0) benign(0.056) TCGA-XK-AAIW-01 1 243354606 243354606 A G CEP170 Silent p.G274G 0.31 TCGA-XK-AAIW-01 1 2436272 2436272 G A PLCH2 3'UTR 0.33 TCGA-XK-AAIW-01 1 24397623 24397623 T C MYOM3 Missense_Mutation p.E1045G 0.29 deleterious(0) probably_damaging(0.952) TCGA-XK-AAIW-01 1 24408513 24408513 G T MYOM3 Missense_Mutation p.P753H 0.54 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 1 24419488 24419488 C T MYOM3 Missense_Mutation p.V347M 0.50 tolerated(0.14) probably_damaging(0.932) TCGA-XK-AAIW-01 1 244572920 244572920 T C ADSS Missense_Mutation p.K447E 0.36 deleterious(0.04) probably_damaging(0.949) TCGA-XK-AAIW-01 1 2452330 2452330 G A PANK4 Silent p.D146D 0.64 TCGA-XK-AAIW-01 1 24673992 24673992 G A GRHL3 Silent p.V526V 0.11 TCGA-XK-AAIW-01 1 24681039 24681039 G A GRHL3 Intron 0.45 TCGA-XK-AAIW-01 1 24684951 24684951 G A STPG1 3'UTR 0.33 TCGA-XK-AAIW-01 1 247267486 247267486 G A ZNF669 Missense_Mutation p.R6C 0.25 tolerated_low_confidence(0.05) possibly_damaging(0.876) TCGA-XK-AAIW-01 1 247320395 247320395 G A ZNF124 Missense_Mutation p.R115C 0.27 deleterious(0.01) benign(0.409) TCGA-XK-AAIW-01 1 24746044 24746044 G A NIPAL3 Missense_Mutation p.G3R 0.17 tolerated(0.15) benign(0.002) TCGA-XK-AAIW-01 1 247464531 247464531 T C ZNF496 Missense_Mutation p.T352A 0.36 tolerated(0.12) benign(0.358) TCGA-XK-AAIW-01 1 247492667 247492667 G A ZNF496 Missense_Mutation p.R72W 0.48 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 1 247582322 247582322 G A NLRP3 Missense_Mutation p.A76T 0.30 tolerated(0.56) benign(0.081) TCGA-XK-AAIW-01 1 247587175 247587175 G A NLRP3 Missense_Mutation p.V144M 0.15 deleterious(0) possibly_damaging(0.835) TCGA-XK-AAIW-01 1 247587868 247587868 G A NLRP3 Missense_Mutation p.E375K 0.28 deleterious(0.02) benign(0.243) TCGA-XK-AAIW-01 1 247614342 247614342 G A OR2B11 Missense_Mutation p.L315F 0.41 tolerated(0.31) benign(0.095) TCGA-XK-AAIW-01 1 247654839 247654839 G A OR2W5 RNA 0.54 TCGA-XK-AAIW-01 1 24768584 24768584 C T NIPAL3 Missense_Mutation p.R68W 0.51 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 247694914 247694914 G A OR2C3 Silent p.S300S 0.33 TCGA-XK-AAIW-01 1 247769303 247769303 G A OR2G3 Missense_Mutation p.R139Q 0.40 tolerated(0.38) benign(0.015) TCGA-XK-AAIW-01 1 248039230 248039230 G A TRIM58 Silent p.A300A 0.36 TCGA-XK-AAIW-01 1 248129537 248129537 C T OR2AK2 Missense_Mutation p.P302S 0.09 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 248262906 248262906 G A OR2L13 Missense_Mutation p.V77I 0.35 deleterious(0.04) benign(0.02) TCGA-XK-AAIW-01 1 248263256 248263256 C T OR2L13 Silent p.V193V 0.46 TCGA-XK-AAIW-01 1 248458151 248458151 C G OR2T12 Missense_Mutation p.A244P 0.16 deleterious(0.04) probably_damaging(0.936) TCGA-XK-AAIW-01 1 248458392 248458392 G A OR2T12 Silent p.S163S 0.45 TCGA-XK-AAIW-01 1 248525007 248525007 C T OR2T4 Missense_Mutation p.S42L 0.66 tolerated(0.06) benign(0.004) TCGA-XK-AAIW-01 1 24861637 24861637 A G RCAN3 Missense_Mutation p.H199R 0.09 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 248813835 248813835 G A OR2T27 Silent p.L117L 0.57 TCGA-XK-AAIW-01 1 249144569 249144569 C T ZNF692 Missense_Mutation p.R472H 0.08 tolerated(0.1) possibly_damaging(0.487) TCGA-XK-AAIW-01 1 249150039 249150039 G A ZNF692 Missense_Mutation p.P261S 0.46 tolerated(0.14) possibly_damaging(0.765) TCGA-XK-AAIW-01 1 249211828 249211828 T - PGBD2 Frame_Shift_Del p.F350Lfs*10 0.35 TCGA-XK-AAIW-01 1 2535386 2535386 G A MMEL1 Silent p.H326H 0.35 TCGA-XK-AAIW-01 1 26135154 26135154 G A SEPN1 Silent p.Q207Q 0.37 TCGA-XK-AAIW-01 1 26135571 26135571 C T SEPN1 Missense_Mutation p.R268C 0.34 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 1 26361404 26361404 A G EXTL1 Missense_Mutation p.D586G 0.39 deleterious(0) probably_damaging(0.94) TCGA-XK-AAIW-01 1 26448718 26448718 G A PDIK1L Missense_Mutation p.A226T 0.46 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 26510233 26510233 G A CNKSR1 Missense_Mutation p.R256H 0.45 tolerated(0.84) benign(0.001) TCGA-XK-AAIW-01 1 26524256 26524256 C A CATSPER4 Missense_Mutation p.S180Y 0.41 tolerated(0.58) possibly_damaging(0.73) TCGA-XK-AAIW-01 1 26582334 26582334 G A CEP85 Missense_Mutation p.R294H 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 26603704 26603704 C T CEP85 Missense_Mutation p.R737C 0.39 deleterious(0) possibly_damaging(0.828) TCGA-XK-AAIW-01 1 26658018 26658018 C T AIM1L Missense_Mutation p.A552T 0.19 tolerated(0.25) benign(0.035) TCGA-XK-AAIW-01 1 26688416 26688416 C T ZNF683 Missense_Mutation p.R414H 0.38 tolerated(0.14) benign(0.009) TCGA-XK-AAIW-01 1 26691066 26691066 C T ZNF683 Missense_Mutation p.C324Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 26872461 26872461 C T RPS6KA1 Missense_Mutation p.R24W 0.27 deleterious_low_confidence(0.01) benign(0) TCGA-XK-AAIW-01 1 26898078 26898078 A G RPS6KA1 Missense_Mutation p.T586A 0.29 deleterious(0) possibly_damaging(0.902) TCGA-XK-AAIW-01 1 27101587 27101587 G A ARID1A Silent p.S1623S 0.43 TCGA-XK-AAIW-01 1 27276630 27276630 C G C1orf172 Missense_Mutation p.S376T 0.45 tolerated(0.13) possibly_damaging(0.789) TCGA-XK-AAIW-01 1 27426937 27426937 G A SLC9A1 Missense_Mutation p.S770L 0.37 tolerated(0.19) benign(0.038) TCGA-XK-AAIW-01 1 27440744 27440744 A T SLC9A1 Missense_Mutation p.V129D 0.32 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 1 27687252 27687252 G A MAP3K6 Silent p.R666R 0.32 TCGA-XK-AAIW-01 1 27873799 27873799 G A AHDC1 3'UTR 0.42 TCGA-XK-AAIW-01 1 27874390 27874390 G A AHDC1 Missense_Mutation p.R1413W 0.39 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-XK-AAIW-01 1 27877906 27877906 C T AHDC1 Missense_Mutation p.D241N 0.29 tolerated_low_confidence(0.16) benign(0.329) TCGA-XK-AAIW-01 1 28275623 28275623 T C SMPDL3B Missense_Mutation p.V108A 0.27 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 28285226 28285226 T C SMPDL3B Silent p.C415C 0.42 TCGA-XK-AAIW-01 1 28527627 28527627 G A DNAJC8 3'UTR 0.36 TCGA-XK-AAIW-01 1 28595713 28595713 C T SESN2 Missense_Mutation p.A37V 0.37 tolerated_low_confidence(0.18) benign(0.001) TCGA-XK-AAIW-01 1 28793151 28793151 G T PHACTR4 Missense_Mutation p.R242M 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 28858370 28858370 C T RCC1 Silent p.G74G 0.32 TCGA-XK-AAIW-01 1 28891266 28891266 C T TRNAU1AP Silent p.G110G 0.41 TCGA-XK-AAIW-01 1 29069960 29069960 G A YTHDF2 Missense_Mutation p.R393Q 0.47 deleterious(0.04) benign(0.045) TCGA-XK-AAIW-01 1 29189256 29189256 G A OPRD1 Missense_Mutation p.G194R 0.35 deleterious(0.01) probably_damaging(0.936) TCGA-XK-AAIW-01 1 29362427 29362427 G A EPB41 Silent p.T485T 0.39 TCGA-XK-AAIW-01 1 29475269 29475269 G A SRSF4 Nonsense_Mutation p.R380* 0.35 TCGA-XK-AAIW-01 1 29618458 29618458 G A PTPRU Missense_Mutation p.S809N 0.43 deleterious(0.02) benign(0.121) TCGA-XK-AAIW-01 1 31426567 31426567 C T PUM1 Missense_Mutation p.G862E 0.14 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 31734425 31734425 G A SNRNP40 Silent p.G325G 0.08 TCGA-XK-AAIW-01 1 31744302 31744302 G A SNRNP40 Silent p.G233G 0.32 TCGA-XK-AAIW-01 1 32098074 32098074 G A PEF1 Intron 0.41 TCGA-XK-AAIW-01 1 32151335 32151335 G T COL16A1 Missense_Mutation p.L641I 0.30 unknown(0) TCGA-XK-AAIW-01 1 32157644 32157644 C T COL16A1 Missense_Mutation p.G407R 0.31 unknown(0) TCGA-XK-AAIW-01 1 32196527 32196527 G T BAI2 Silent p.P1418P 0.26 TCGA-XK-AAIW-01 1 32204494 32204494 C T BAI2 Missense_Mutation p.R847H 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-XK-AAIW-01 1 32207730 32207730 G A BAI2 Silent p.S447S 0.25 TCGA-XK-AAIW-01 1 32221864 32221864 T C BAI2 Missense_Mutation p.N192D 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-XK-AAIW-01 1 32557293 32557293 C T TMEM39B Missense_Mutation p.P203L 0.40 tolerated(0.18) probably_damaging(0.938) TCGA-XK-AAIW-01 1 32568174 32568174 A G TMEM39B Missense_Mutation p.Y460C 0.34 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 32653640 32653640 G A TXLNA Missense_Mutation p.R228H 0.45 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 1 32660568 32660568 C T TXLNA Silent p.C471C 0.09 TCGA-XK-AAIW-01 1 32713183 32713183 C T FAM167B Missense_Mutation p.A54V 0.29 tolerated(0.09) benign(0.172) TCGA-XK-AAIW-01 1 32793220 32793220 T C HDAC1 Missense_Mutation p.V193A 0.22 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 1 33058588 33058588 G T ZBTB8A Missense_Mutation p.R19M 0.40 probably_damaging(0.954) TCGA-XK-AAIW-01 1 33058779 33058779 G A ZBTB8A Missense_Mutation p.V83I 0.48 probably_damaging(0.999) TCGA-XK-AAIW-01 1 33123147 33123147 C T RBBP4 Missense_Mutation p.A95V 0.37 tolerated(0.15) benign(0.005) TCGA-XK-AAIW-01 1 33235718 33235718 G A KIAA1522 Missense_Mutation p.R313Q 0.46 tolerated(0.21) unknown(0) TCGA-XK-AAIW-01 1 33237579 33237579 G A KIAA1522 Silent p.A933A 0.50 TCGA-XK-AAIW-01 1 33246678 33246678 G A YARS Missense_Mutation p.R371C 0.38 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 1 33272105 33272105 C T YARS Missense_Mutation p.G163D 0.41 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 1 3328517 3328517 T C PRDM16 Missense_Mutation p.S586P 0.45 deleterious(0.02) benign(0.019) TCGA-XK-AAIW-01 1 33292352 33292352 A G S100PBP Missense_Mutation p.N218D 0.41 tolerated(0.11) benign(0.027) TCGA-XK-AAIW-01 1 33402616 33402616 G A RNF19B Missense_Mutation p.R664C 0.45 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-XK-AAIW-01 1 33486968 33486968 C A AK2 Missense_Mutation p.R142M 0.51 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 1 33560279 33560279 C T ADC Missense_Mutation p.P240S 0.34 tolerated(0.08) probably_damaging(1) TCGA-XK-AAIW-01 1 33612987 33612987 G T TRIM62 Missense_Mutation p.L407I 0.44 deleterious(0) probably_damaging(0.93) TCGA-XK-AAIW-01 1 33747315 33747315 G A ZNF362 Missense_Mutation p.A271T 0.45 deleterious(0.04) possibly_damaging(0.779) TCGA-XK-AAIW-01 1 33985438 33985438 G A CSMD2 Silent p.G3426G 0.12 TCGA-XK-AAIW-01 1 34006739 34006739 C T CSMD2 Missense_Mutation p.V3006I 0.32 tolerated(0.23) benign(0.013) TCGA-XK-AAIW-01 1 34037247 34037247 G A CSMD2 Silent p.F2616F 0.44 TCGA-XK-AAIW-01 1 34123626 34123626 G A CSMD2 Missense_Mutation p.A1416V 0.18 tolerated(0.21) benign(0.003) TCGA-XK-AAIW-01 1 3413851 3413851 C T MEGF6 Missense_Mutation p.V1143I 0.21 tolerated(0.26) benign(0.08) TCGA-XK-AAIW-01 1 3417578 3417578 C T MEGF6 Missense_Mutation p.G843R 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 34190279 34190279 G T CSMD2 Missense_Mutation p.L868M 0.32 tolerated(0.08) probably_damaging(0.988) TCGA-XK-AAIW-01 1 34209135 34209135 T C CSMD2 Missense_Mutation p.N600S 0.38 tolerated(0.27) benign(0.277) TCGA-XK-AAIW-01 1 3511909 3511909 G A MEGF6 Silent p.C123C 0.29 TCGA-XK-AAIW-01 1 35227553 35227553 C T GJB4 Missense_Mutation p.T233M 0.38 deleterious(0.04) benign(0.326) TCGA-XK-AAIW-01 1 35370527 35370527 G A DLGAP3 Missense_Mutation p.A153V 0.44 tolerated_low_confidence(0.26) benign(0.009) TCGA-XK-AAIW-01 1 3545124 3545124 C T TPRG1L Missense_Mutation p.A259V 0.27 tolerated(0.1) benign(0.194) TCGA-XK-AAIW-01 1 35452688 35452688 A T ZMYM6 3'UTR 0.15 TCGA-XK-AAIW-01 1 35484911 35484912 - A ZMYM6 Intron 0.45 TCGA-XK-AAIW-01 1 3551600 3551600 C A WRAP73 Silent p.T259T 0.43 TCGA-XK-AAIW-01 1 35563119 35563119 C A ZMYM1 Missense_Mutation p.S124Y 0.40 deleterious_low_confidence(0.05) probably_damaging(0.987) TCGA-XK-AAIW-01 1 35569964 35569964 G A ZMYM1 Missense_Mutation p.C163Y 0.55 deleterious_low_confidence(0) probably_damaging(1) TCGA-XK-AAIW-01 1 35580705 35580705 C T ZMYM1 Missense_Mutation p.R1092C 0.42 deleterious(0) probably_damaging(0.965) TCGA-XK-AAIW-01 1 35851753 35851753 G A ZMYM4 Missense_Mutation p.R600H 0.39 deleterious(0) benign(0.079) TCGA-XK-AAIW-01 1 35900535 35900535 G A KIAA0319L Missense_Mutation p.T1037I 0.28 tolerated(0.06) benign(0.049) TCGA-XK-AAIW-01 1 36029409 36029409 C T NCDN Missense_Mutation p.T551M 0.13 deleterious(0.01) benign(0.213) TCGA-XK-AAIW-01 1 36101917 36101917 G A PSMB2 Nonsense_Mutation p.R70* 0.34 TCGA-XK-AAIW-01 1 36358239 36358239 C T AGO1 Silent p.N97N 0.31 TCGA-XK-AAIW-01 1 36367818 36367818 C T AGO1 Missense_Mutation p.A426V 0.36 tolerated(0.17) benign(0.317) TCGA-XK-AAIW-01 1 3643784 3643784 C T TP73 Missense_Mutation p.R280W 0.38 deleterious(0) probably_damaging(0.943) TCGA-XK-AAIW-01 1 36474545 36474545 C T AGO3 Missense_Mutation p.A310V 0.33 tolerated(0.83) benign(0.429) TCGA-XK-AAIW-01 1 3648065 3648065 A G TP73 Missense_Mutation p.Y508C 0.44 tolerated(0.1) benign(0.042) TCGA-XK-AAIW-01 1 36552435 36552435 C T TEKT2 Missense_Mutation p.R207C 0.35 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 1 36639029 36639029 G A MAP7D1 Missense_Mutation p.R230H 0.39 probably_damaging(0.995) TCGA-XK-AAIW-01 1 36643582 36643582 C T MAP7D1 Silent p.S496S 0.41 TCGA-XK-AAIW-01 1 36809556 36809556 G A STK40 Silent p.T303T 0.38 TCGA-XK-AAIW-01 1 3755674 3755674 G A CEP104 Missense_Mutation p.R249C 0.37 deleterious(0.03) probably_damaging(0.969) TCGA-XK-AAIW-01 1 3768889 3768889 G A CEP104 Missense_Mutation p.A28V 0.18 deleterious(0.01) probably_damaging(0.981) TCGA-XK-AAIW-01 1 38048477 38048477 G A GNL2 Missense_Mutation p.R233C 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 38188716 38188716 C A EPHA10 Nonsense_Mutation p.G653* 0.32 TCGA-XK-AAIW-01 1 38227057 38227057 G A EPHA10 Intron 0.46 TCGA-XK-AAIW-01 1 38227558 38227558 C A EPHA10 Missense_Mutation p.K123N 0.44 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 38289411 38289411 G A MTF1 Missense_Mutation p.T381M 0.35 tolerated(0.07) benign(0.02) TCGA-XK-AAIW-01 1 39801166 39801166 C T MACF1 Intron 0.47 TCGA-XK-AAIW-01 1 39827169 39827169 C T MACF1 Silent p.F2135F 0.40 TCGA-XK-AAIW-01 1 39847733 39847733 C T MACF1 Missense_Mutation p.P2524L 0.44 probably_damaging(0.999) TCGA-XK-AAIW-01 1 39853218 39853218 A G MACF1 Missense_Mutation p.M2840V 0.40 benign(0.001) TCGA-XK-AAIW-01 1 39927670 39927670 G A MACF1 Silent p.A5154A 0.47 TCGA-XK-AAIW-01 1 40149676 40149676 G T HPCAL4 Missense_Mutation p.A104D 0.27 deleterious(0) possibly_damaging(0.761) TCGA-XK-AAIW-01 1 40209539 40209539 G A PPIE Silent p.T109T 0.53 TCGA-XK-AAIW-01 1 40704481 40704481 T A RLF Nonsense_Mutation p.C1369* 0.41 TCGA-XK-AAIW-01 1 40961711 40961711 G A ZFP69 Missense_Mutation p.A521T 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-XK-AAIW-01 1 41223865 41223865 G A NFYC Missense_Mutation p.A154T 0.41 tolerated(0.07) probably_damaging(0.993) TCGA-XK-AAIW-01 1 41466749 41466749 G A CTPS1 Missense_Mutation p.V352M 0.38 tolerated(0.09) benign(0.039) TCGA-XK-AAIW-01 1 41503052 41503052 G A SCMH1 Missense_Mutation p.R544C 0.32 deleterious(0.02) possibly_damaging(0.453) TCGA-XK-AAIW-01 1 42046505 42046505 G A HIVEP3 Missense_Mutation p.R1322C 0.33 probably_damaging(0.998) TCGA-XK-AAIW-01 1 42880423 42880423 G A RIMKLA Silent p.S318S 0.41 TCGA-XK-AAIW-01 1 42915624 42915624 G A ZMYND12 Missense_Mutation p.R73W 0.42 deleterious(0) benign(0.062) TCGA-XK-AAIW-01 1 42922450 42922450 G A PPCS Missense_Mutation p.A72T 0.41 deleterious(0.04) benign(0.079) TCGA-XK-AAIW-01 1 43047172 43047172 G T CCDC30 Nonsense_Mutation p.E403* 0.37 TCGA-XK-AAIW-01 1 43076730 43076730 C T CCDC30 Nonsense_Mutation p.R489* 0.39 TCGA-XK-AAIW-01 1 43119098 43119098 C T CCDC30 Missense_Mutation p.P709S 0.39 tolerated(0.16) possibly_damaging(0.888) TCGA-XK-AAIW-01 1 43296085 43296085 G A ERMAP Intron 0.39 TCGA-XK-AAIW-01 1 43630067 43630067 C T EBNA1BP2 3'UTR 0.43 TCGA-XK-AAIW-01 1 43672498 43672498 C T WDR65 Silent p.C550C 0.19 TCGA-XK-AAIW-01 1 43778104 43778104 G A TIE1 Missense_Mutation p.G587R 0.23 tolerated(0.39) possibly_damaging(0.882) TCGA-XK-AAIW-01 1 43812590 43812590 C T MPL Silent p.G431G 0.47 TCGA-XK-AAIW-01 1 43870163 43870163 C A SZT2 Missense_Mutation p.P147H 0.10 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 43896378 43896378 G A SZT2 Silent p.P1507P 0.35 TCGA-XK-AAIW-01 1 43896661 43896661 C T SZT2 Nonsense_Mutation p.R1549* 0.40 TCGA-XK-AAIW-01 1 43903311 43903311 G A SZT2 Silent p.A2055A 0.41 TCGA-XK-AAIW-01 1 43906208 43906208 C A SZT2 Missense_Mutation p.P2375H 0.43 deleterious(0.02) benign(0.344) TCGA-XK-AAIW-01 1 43906960 43906960 C T SZT2 Missense_Mutation p.R2417W 0.11 deleterious(0) probably_damaging(0.965) TCGA-XK-AAIW-01 1 43908202 43908202 A G SZT2 Silent p.R2631R 0.42 TCGA-XK-AAIW-01 1 43908866 43908866 G A SZT2 Silent p.E2752E 0.53 TCGA-XK-AAIW-01 1 44019259 44019259 G A PTPRF Missense_Mutation p.R63H 0.33 deleterious(0.01) possibly_damaging(0.834) TCGA-XK-AAIW-01 1 44054509 44054509 G A PTPRF Missense_Mutation p.V263M 0.38 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 1 44086637 44086637 G T PTPRF Missense_Mutation p.Q1831H 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 44201956 44201956 G A ST3GAL3 Missense_Mutation p.R8H 0.06 tolerated_low_confidence(0.52) unknown(0) TCGA-XK-AAIW-01 1 44442475 44442475 G A ATP6V0B Missense_Mutation p.G127S 0.46 tolerated(0.99) benign(0.007) TCGA-XK-AAIW-01 1 44457979 44457979 G A CCDC24 Silent p.P74P 0.38 TCGA-XK-AAIW-01 1 44463274 44463274 C T SLC6A9 Silent p.A688A 0.16 TCGA-XK-AAIW-01 1 45091982 45091982 C A RNF220 Missense_Mutation p.S273Y 0.23 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 1 45232618 45232618 C T KIF2C Nonsense_Mutation p.R698* 0.37 TCGA-XK-AAIW-01 1 45288094 45288094 G A PTCH2 Missense_Mutation p.T1202I 0.57 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-XK-AAIW-01 1 45469960 45469960 A G HECTD3 Silent p.C744C 0.37 TCGA-XK-AAIW-01 1 45475738 45475738 A G HECTD3 Missense_Mutation p.Y227H 0.47 tolerated(0.18) benign(0.006) TCGA-XK-AAIW-01 1 45484894 45484894 G A ZSWIM5 Silent p.H930H 0.50 TCGA-XK-AAIW-01 1 45485814 45485814 C T ZSWIM5 Missense_Mutation p.M873I 0.31 deleterious(0.02) unknown(0) TCGA-XK-AAIW-01 1 45806886 45806886 C T TOE1 Missense_Mutation p.T65M 0.38 deleterious(0.03) possibly_damaging(0.708) TCGA-XK-AAIW-01 1 45808472 45808472 A G TOE1 Intron 0.40 TCGA-XK-AAIW-01 1 45974469 45974469 G A MMACHC Missense_Mutation p.R144H 0.18 tolerated(0.46) benign(0) TCGA-XK-AAIW-01 1 46093857 46093857 C T GPBP1L1 3'UTR 0.39 TCGA-XK-AAIW-01 1 46494520 46494520 G A MAST2 Missense_Mutation p.M711I 0.35 deleterious_low_confidence(0) possibly_damaging(0.586) TCGA-XK-AAIW-01 1 46651256 46651256 G A TSPAN1 3'UTR 0.42 TCGA-XK-AAIW-01 1 46661564 46661564 C T POMGNT1 Silent p.T151T 0.15 TCGA-XK-AAIW-01 1 46726956 46726956 G A RAD54L Missense_Mutation p.A264T 0.48 tolerated(0.07) benign(0.003) TCGA-XK-AAIW-01 1 46745051 46745051 C A LRRC41 Intron 0.48 TCGA-XK-AAIW-01 1 46874155 46874155 C T FAAH Missense_Mutation p.R326C 0.39 deleterious(0) benign(0.161) TCGA-XK-AAIW-01 1 47014926 47014926 G A KNCN Silent p.I55I 0.16 TCGA-XK-AAIW-01 1 47016750 47016750 G A KNCN Silent p.G46G 0.41 TCGA-XK-AAIW-01 1 47075832 47075832 G T MOB3C Missense_Mutation p.L207M 0.41 tolerated(0.1) benign(0.395) TCGA-XK-AAIW-01 1 47144280 47144280 G A EFCAB14 Silent p.G447G 0.36 TCGA-XK-AAIW-01 1 47395847 47395848 - T CYP4A11 Frame_Shift_Ins p.N500Kfs*12 0.26 TCGA-XK-AAIW-01 1 47560306 47560306 C T CYP4Z1 Missense_Mutation p.R281C 0.47 deleterious(0.02) benign(0.095) TCGA-XK-AAIW-01 1 47571860 47571860 C T CYP4Z1 Silent p.Y376Y 0.31 TCGA-XK-AAIW-01 1 47610124 47610124 C T CYP4A22 Missense_Mutation p.L296F 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 47610366 47610366 C T CYP4A22 Missense_Mutation p.R348W 0.31 deleterious(0) possibly_damaging(0.643) TCGA-XK-AAIW-01 1 47735351 47735351 G A STIL Silent p.N857N 0.47 TCGA-XK-AAIW-01 1 47904507 47904507 C T FOXD2 Missense_Mutation p.H234Y 0.48 deleterious_low_confidence(0.04) unknown(0) TCGA-XK-AAIW-01 1 52825142 52825142 G A CC2D1B Missense_Mutation p.P336L 0.14 deleterious(0) possibly_damaging(0.863) TCGA-XK-AAIW-01 1 52940596 52940596 T C ZCCHC11 Missense_Mutation p.T879A 0.29 tolerated(0.54) benign(0.253) TCGA-XK-AAIW-01 1 53074102 53074102 C T GPX7 3'UTR 0.47 TCGA-XK-AAIW-01 1 53153624 53153624 G A COA7 Missense_Mutation p.A155V 0.28 tolerated(0.49) benign(0.042) TCGA-XK-AAIW-01 1 53261994 53261994 G A ZYG11B Nonsense_Mutation p.W455* 0.39 TCGA-XK-AAIW-01 1 53444040 53444040 G A SCP2 Splice_Site p.X275_splice 0.42 TCGA-XK-AAIW-01 1 53459082 53459082 T C SCP2 Intron 0.39 TCGA-XK-AAIW-01 1 53516312 53516312 G A SCP2 Missense_Mutation p.G527D 0.20 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 53547765 53547765 C T PODN Missense_Mutation p.R640C 0.41 deleterious_low_confidence(0) possibly_damaging(0.799) TCGA-XK-AAIW-01 1 53679043 53679043 A G CPT2 Missense_Mutation p.N585D 0.29 tolerated(0.09) probably_damaging(0.933) TCGA-XK-AAIW-01 1 53736988 53736988 C T LRP8 Missense_Mutation p.G346D 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 1 54060291 54060291 C T GLIS1 Silent p.T95T 0.29 TCGA-XK-AAIW-01 1 54683984 54683984 G C MRPL37 3'UTR 0.42 TCGA-XK-AAIW-01 1 55118841 55118841 C T MROH7 Missense_Mutation p.P81L 0.37 deleterious_low_confidence(0.04) benign(0.056) TCGA-XK-AAIW-01 1 55168415 55168415 C T MROH7 Silent p.C1187C 0.39 TCGA-XK-AAIW-01 1 55207181 55207181 C T TTC4 Nonsense_Mutation p.R387* 0.32 TCGA-XK-AAIW-01 1 55224552 55224552 C T PARS2 Missense_Mutation p.V95I 0.37 tolerated(0.12) benign(0.111) TCGA-XK-AAIW-01 1 55224719 55224719 C T PARS2 Missense_Mutation p.R39H 0.37 tolerated(0.07) benign(0.04) TCGA-XK-AAIW-01 1 55277779 55277779 C T C1orf177 Nonsense_Mutation p.R227* 0.24 TCGA-XK-AAIW-01 1 55277797 55277797 G A C1orf177 Missense_Mutation p.G233S 0.21 deleterious(0.03) possibly_damaging(0.83) TCGA-XK-AAIW-01 1 55340837 55340837 C T DHCR24 Missense_Mutation p.G181S 0.29 deleterious(0) probably_damaging(0.971) TCGA-XK-AAIW-01 1 55451849 55451849 C T TMEM61 Missense_Mutation p.T32M 0.38 deleterious(0.03) probably_damaging(0.968) TCGA-XK-AAIW-01 1 55521752 55521752 G A PCSK9 Missense_Mutation p.V296I 0.36 tolerated(0.4) benign(0.005) TCGA-XK-AAIW-01 1 55537593 55537593 G A USP24 Missense_Mutation p.T2565M 0.54 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 55604636 55604636 C T USP24 Missense_Mutation p.R933H 0.56 tolerated(0.07) possibly_damaging(0.512) TCGA-XK-AAIW-01 1 57161695 57161695 G A PRKAA2 Silent p.E217E 0.38 TCGA-XK-AAIW-01 1 57169922 57169922 C T PRKAA2 Missense_Mutation p.A356V 0.48 tolerated(0.63) benign(0.028) TCGA-XK-AAIW-01 1 57347138 57347138 A T C8A Missense_Mutation p.E162V 0.38 deleterious(0) possibly_damaging(0.781) TCGA-XK-AAIW-01 1 57372341 57372341 T C C8A Silent p.G366G 0.39 TCGA-XK-AAIW-01 1 5924497 5924497 G A NPHP4 Silent p.G1299G 0.30 TCGA-XK-AAIW-01 1 59247825 59247825 T C JUN Silent p.A306A 0.12 TCGA-XK-AAIW-01 1 5927957 5927957 C A NPHP4 Splice_Site p.X1106_splice 0.22 TCGA-XK-AAIW-01 1 60073567 60073567 C T FGGY Silent p.S332S 0.29 TCGA-XK-AAIW-01 1 60463394 60463394 G A C1orf87 Missense_Mutation p.S456F 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 1 6100625 6100625 C T AL035406.1 3'Flank 0.27 TCGA-XK-AAIW-01 1 6158638 6158638 G A KCNAB2 3'UTR 0.27 TCGA-XK-AAIW-01 1 6166714 6166714 G A CHD5 Missense_Mutation p.R1902C 0.67 deleterious(0) possibly_damaging(0.806) TCGA-XK-AAIW-01 1 6194781 6194781 G A CHD5 Silent p.A1003A 0.38 TCGA-XK-AAIW-01 1 6202613 6202613 G A CHD5 Missense_Mutation p.T699I 0.31 deleterious(0.02) possibly_damaging(0.459) TCGA-XK-AAIW-01 1 62455951 62455951 G A INADL Missense_Mutation p.R1261H 0.36 deleterious(0.01) benign(0.07) TCGA-XK-AAIW-01 1 62550224 62550224 G A INADL Silent p.T1427T 0.45 TCGA-XK-AAIW-01 1 62672630 62672630 A G L1TD1 Silent p.L110L 0.30 TCGA-XK-AAIW-01 1 6314106 6314106 C A GPR153 Missense_Mutation p.S153I 0.30 tolerated(0.29) possibly_damaging(0.859) TCGA-XK-AAIW-01 1 63912520 63912520 A G ITGB3BP Silent p.R203R 0.36 TCGA-XK-AAIW-01 1 63999837 63999837 G A EFCAB7 Missense_Mutation p.G252R 0.19 tolerated(0.07) benign(0.022) TCGA-XK-AAIW-01 1 6488405 6488405 C T ESPN Silent p.G138G 0.35 TCGA-XK-AAIW-01 1 65095157 65095157 C T CACHD1 Missense_Mutation p.R162C 0.40 deleterious(0) probably_damaging(0.972) TCGA-XK-AAIW-01 1 65303726 65303726 A G JAK1 Missense_Mutation p.L1010P 0.44 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 1 65309756 65309756 C T JAK1 Silent p.T798T 0.26 TCGA-XK-AAIW-01 1 6589156 6589156 C T NOL9 Missense_Mutation p.A575T 0.29 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 1 65895626 65895626 C T LEPROT Silent p.D58D 0.41 TCGA-XK-AAIW-01 1 6640742 6640742 T C ZBTB48 Missense_Mutation p.Y25H 0.43 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 1 67142747 67142747 C T SGIP1 Missense_Mutation p.S236L 0.39 deleterious_low_confidence(0.02) probably_damaging(0.945) TCGA-XK-AAIW-01 1 67411867 67411867 T A MIER1 Missense_Mutation p.D76E 0.38 tolerated(0.1) benign(0.047) TCGA-XK-AAIW-01 1 67447511 67447511 C T MIER1 Nonsense_Mutation p.R427* 0.38 TCGA-XK-AAIW-01 1 67507943 67507943 C T SLC35D1 Silent p.A235A 0.37 TCGA-XK-AAIW-01 1 68512685 68512685 C T DIRAS3 Missense_Mutation p.R99H 0.39 deleterious(0) possibly_damaging(0.86) TCGA-XK-AAIW-01 1 68954165 68954165 G A DEPDC1 Missense_Mutation p.P205S 0.37 tolerated(0.36) benign(0.02) TCGA-XK-AAIW-01 1 70257825 70257825 C T LRRC7 Missense_Mutation p.L97F 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-XK-AAIW-01 1 70504190 70504190 G A LRRC7 Missense_Mutation p.A857T 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-XK-AAIW-01 1 70771970 70771970 G T ANKRD13C Missense_Mutation p.P238H 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 70904388 70904388 C T CTH Missense_Mutation p.A357V 0.31 deleterious(0.01) benign(0.067) TCGA-XK-AAIW-01 1 72400777 72400777 G A NEGR1 Missense_Mutation p.H132Y 0.36 tolerated(0.41) benign(0.017) TCGA-XK-AAIW-01 1 72748149 72748149 G A NEGR1 Missense_Mutation p.A10V 0.33 tolerated(0.09) probably_damaging(0.985) TCGA-XK-AAIW-01 1 74648336 74648336 C T LRRIQ3 Silent p.A153A 0.36 TCGA-XK-AAIW-01 1 74648511 74648511 C T LRRIQ3 Missense_Mutation p.G95E 0.14 deleterious(0.03) benign(0.208) TCGA-XK-AAIW-01 1 74670868 74670868 C T FPGT Silent p.L379L 0.40 TCGA-XK-AAIW-01 1 74819813 74819813 G T FPGT-TNNI3K Missense_Mutation p.G507W 0.16 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 75037218 75037218 C T C1orf173 Silent p.E1392E 0.34 TCGA-XK-AAIW-01 1 75102123 75102123 C T C1orf173 Splice_Site p.X149_splice 0.36 TCGA-XK-AAIW-01 1 75683619 75683619 C T SLC44A5 Missense_Mutation p.G519E 0.41 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 1 76288159 76288159 G A MSH4 Missense_Mutation p.R352H 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 76397784 76397784 C T ASB17 Missense_Mutation p.A65T 0.43 tolerated_low_confidence(0.3) benign(0.004) TCGA-XK-AAIW-01 1 77528904 77528904 C T ST6GALNAC5 3'UTR 0.28 TCGA-XK-AAIW-01 1 77620137 77620137 C T PIGK Missense_Mutation p.S328N 0.17 tolerated(0.36) benign(0.002) TCGA-XK-AAIW-01 1 78098877 78098877 C A ZZZ3 Nonsense_Mutation p.E55* 0.38 TCGA-XK-AAIW-01 1 78184290 78184291 - T USP33 Frame_Shift_Ins p.N607Kfs*4 0.12 TCGA-XK-AAIW-01 1 78426039 78426039 G A FUBP1 Missense_Mutation p.P496S 0.31 tolerated(0.22) unknown(0) TCGA-XK-AAIW-01 1 8074217 8074217 G A ERRFI1 Missense_Mutation p.R148W 0.32 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 1 82450947 82450947 G A LPHN2 Missense_Mutation p.R1122H 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 1 82456574 82456574 G A LPHN2 Missense_Mutation p.M1319I 0.33 tolerated_low_confidence(0.1) probably_damaging(0.986) TCGA-XK-AAIW-01 1 8386059 8386059 C T SLC45A1 Silent p.P224P 0.25 TCGA-XK-AAIW-01 1 8390709 8390709 G A SLC45A1 Missense_Mutation p.D386N 0.35 tolerated(0.26) benign(0.005) TCGA-XK-AAIW-01 1 8424212 8424212 G A RERE Silent p.P548P 0.50 TCGA-XK-AAIW-01 1 84408190 84408190 G A TTLL7 Nonsense_Mutation p.R227* 0.47 TCGA-XK-AAIW-01 1 85031599 85031599 A T CTBS Missense_Mutation p.S208T 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-XK-AAIW-01 1 85279775 85279775 C A LPAR3 Missense_Mutation p.Q272H 0.48 tolerated(0.07) probably_damaging(0.925) TCGA-XK-AAIW-01 1 85331401 85331401 G A LPAR3 Missense_Mutation p.R135W 0.41 deleterious(0) probably_damaging(0.972) TCGA-XK-AAIW-01 1 85331569 85331569 C T LPAR3 Missense_Mutation p.A79T 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 85551600 85551600 C A WDR63 Silent p.A209A 0.42 TCGA-XK-AAIW-01 1 86203178 86203178 C T COL24A1 Nonsense_Mutation p.W1561* 0.36 TCGA-XK-AAIW-01 1 86210460 86210460 G T COL24A1 Missense_Mutation p.L1521M 0.30 deleterious(0) probably_damaging(0.916) TCGA-XK-AAIW-01 1 86512508 86512508 C A COL24A1 Missense_Mutation p.Q650H 0.11 tolerated(0.09) benign(0.238) TCGA-XK-AAIW-01 1 86590931 86590931 G A COL24A1 Missense_Mutation p.T363I 0.37 tolerated(0.06) benign(0.101) TCGA-XK-AAIW-01 1 87043586 87043586 C T CLCA4 Silent p.G651G 0.38 TCGA-XK-AAIW-01 1 87045161 87045161 G A CLCA4 Silent p.L749L 0.35 TCGA-XK-AAIW-01 1 87369093 87369093 G A SEP15 Silent p.C38C 0.23 TCGA-XK-AAIW-01 1 87379755 87379755 G A SEP15 Missense_Mutation p.P11S 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-XK-AAIW-01 1 87538637 87538637 G A HS2ST1 Missense_Mutation p.E49K 0.22 tolerated(0.23) benign(0.062) TCGA-XK-AAIW-01 1 89236101 89236101 C T PKN2 Nonsense_Mutation p.R191* 0.44 TCGA-XK-AAIW-01 1 89250335 89250335 T C PKN2 Silent p.V333V 0.42 TCGA-XK-AAIW-01 1 89250336 89250336 C T PKN2 Missense_Mutation p.R334C 0.43 tolerated(0.12) benign(0.134) TCGA-XK-AAIW-01 1 8930530 8930530 G A ENO1 Missense_Mutation p.A74V 0.24 deleterious_low_confidence(0.05) benign(0.025) TCGA-XK-AAIW-01 1 89449362 89449362 C T RBMXL1 Missense_Mutation p.G50R 0.24 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 89518971 89518971 G A GBP1 3'UTR 0.40 TCGA-XK-AAIW-01 1 89522750 89522750 G A GBP1 Silent p.N314N 0.37 TCGA-XK-AAIW-01 1 89597831 89597831 C A GBP7 3'UTR 0.33 TCGA-XK-AAIW-01 1 89597932 89597932 G A GBP7 Missense_Mutation p.A606V 0.33 tolerated(0.37) benign(0.005) TCGA-XK-AAIW-01 1 89654413 89654413 C T GBP4 Missense_Mutation p.C421Y 0.42 deleterious(0) possibly_damaging(0.818) TCGA-XK-AAIW-01 1 89730602 89730602 C T GBP5 Missense_Mutation p.D306N 0.27 tolerated(0.19) benign(0.019) TCGA-XK-AAIW-01 1 89847452 89847452 G A GBP6 Silent p.A357A 0.19 TCGA-XK-AAIW-01 1 898630 898630 G A KLHL17 Missense_Mutation p.G395D 0.53 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 1 90049500 90049500 G A LRRC8B Missense_Mutation p.G431S 0.32 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 1 90179785 90179785 C T LRRC8C Silent p.N552N 0.31 TCGA-XK-AAIW-01 1 90399036 90399036 C T LRRC8D Nonsense_Mutation p.R137* 0.54 TCGA-XK-AAIW-01 1 9067389 9067389 G A SLC2A7 Missense_Mutation p.A391V 0.37 tolerated(0.15) benign(0.006) TCGA-XK-AAIW-01 1 9118306 9118306 G T SLC2A5 Missense_Mutation p.L13M 0.41 tolerated(0.07) benign(0.156) TCGA-XK-AAIW-01 1 9129621 9129621 G A SLC2A5 5'UTR 0.47 TCGA-XK-AAIW-01 1 9171537 9171537 G A GPR157 Missense_Mutation p.P132L 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 1 91978651 91978651 C T CDC7 Silent p.T203T 0.44 TCGA-XK-AAIW-01 1 92193276 92193276 G A TGFBR3 Silent p.C275C 0.47 TCGA-XK-AAIW-01 1 92707800 92707800 G A C1orf146 Missense_Mutation p.R33Q 0.47 tolerated(1) benign(0.011) TCGA-XK-AAIW-01 1 934406 934406 C T HES4 3'UTR 0.36 TCGA-XK-AAIW-01 1 93672762 93672762 G A CCDC18 Missense_Mutation p.S393N 0.44 tolerated(0.16) benign(0.005) TCGA-XK-AAIW-01 1 93812296 93812296 G A DR1 Missense_Mutation p.A32T 0.43 deleterious(0.04) possibly_damaging(0.501) TCGA-XK-AAIW-01 1 93812396 93812396 C T DR1 Missense_Mutation p.T65I 0.39 deleterious(0) possibly_damaging(0.852) TCGA-XK-AAIW-01 1 94018099 94018099 C T FNBP1L 3'UTR 0.27 TCGA-XK-AAIW-01 1 94049651 94049651 G A BCAR3 Silent p.P319P 0.54 TCGA-XK-AAIW-01 1 94586597 94586597 C T ABCA4 Missense_Mutation p.G2D 0.40 deleterious(0.01) benign(0.367) TCGA-XK-AAIW-01 1 95530491 95530491 A G ALG14 Silent p.T73T 0.27 TCGA-XK-AAIW-01 1 9775719 9775719 C T PIK3CD Missense_Mutation p.R88C 0.24 deleterious(0.03) probably_damaging(0.952) TCGA-XK-AAIW-01 1 9775775 9775775 C T PIK3CD Silent p.G106G 0.17 TCGA-XK-AAIW-01 1 9781512 9781512 C T PIK3CD Silent p.L608L 0.41 TCGA-XK-AAIW-01 1 9795233 9795233 C G CLSTN1 Splice_Site p.X628_splice 0.13 TCGA-XK-AAIW-01 1 9811643 9811643 G A CLSTN1 Silent p.Y179Y 0.31 TCGA-XK-AAIW-01 1 981376 981376 C T AGRN Missense_Mutation p.R905C 0.18 tolerated(0.05) benign(0.041) TCGA-XK-AAIW-01 1 985923 985923 G A AGRN Missense_Mutation p.R1698H 0.44 deleterious(0.02) benign(0.057) TCGA-XK-AAIW-01 1 99422227 99422228 - T LPPR5 Frame_Shift_Ins p.T103Nfs*54 0.37 TCGA-XK-AAIW-01 1 99470129 99470129 C T LPPR5 Silent p.T33T 0.39 TCGA-XK-AAIW-01 20 10628675 10628675 G A JAG1 Silent p.C551C 0.37 TCGA-XK-AAIW-01 20 13604122 13604122 C T TASP1 Missense_Mutation p.A85T 0.40 deleterious(0.04) probably_damaging(0.964) TCGA-XK-AAIW-01 20 1426346 1426346 G A NSFL1C Silent p.G307G 0.72 TCGA-XK-AAIW-01 20 14665495 14665495 G A MACROD2 Missense_Mutation p.G103D 0.30 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 16359569 16359569 G A KIF16B Silent p.G1026G 0.17 TCGA-XK-AAIW-01 20 16387065 16387065 C T KIF16B Missense_Mutation p.R550H 0.25 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 20 16488647 16488647 C T KIF16B Missense_Mutation p.V219I 0.43 deleterious(0.02) possibly_damaging(0.622) TCGA-XK-AAIW-01 20 16553918 16553918 C T KIF16B Translation_Start_Site p.M1? 0.25 deleterious(0) benign(0.21) TCGA-XK-AAIW-01 20 16729588 16729588 G A OTOR Silent p.Q64Q 0.15 TCGA-XK-AAIW-01 20 17943404 17943404 G A SNX5 Intron 0.43 TCGA-XK-AAIW-01 20 18464142 18464142 C T POLR3F Silent p.H297H 0.35 TCGA-XK-AAIW-01 20 18470588 18470588 G A RBBP9 Silent p.C127C 0.38 TCGA-XK-AAIW-01 20 18724893 18724893 G A DTD1 Silent p.P209P 0.54 TCGA-XK-AAIW-01 20 20007509 20007509 G A NAA20 Missense_Mutation p.R84Q 0.50 deleterious(0.04) probably_damaging(0.923) TCGA-XK-AAIW-01 20 20071554 20071554 C T C20orf26 Silent p.Y211Y 0.39 TCGA-XK-AAIW-01 20 20349842 20349842 G A INSM1 Missense_Mutation p.A311T 0.38 deleterious(0) possibly_damaging(0.787) TCGA-XK-AAIW-01 20 20484085 20484085 C T RALGAPA2 Silent p.T1706T 0.32 TCGA-XK-AAIW-01 20 20517421 20517421 C T RALGAPA2 Missense_Mutation p.R1098H 0.20 deleterious(0.02) benign(0.158) TCGA-XK-AAIW-01 20 20618022 20618022 A G RALGAPA2 Missense_Mutation p.Y264H 0.29 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 20 21687107 21687107 C T PAX1 Silent p.G106G 0.40 TCGA-XK-AAIW-01 20 22563481 22563481 G A FOXA2 Silent p.Y133Y 0.45 TCGA-XK-AAIW-01 20 23016836 23016836 G A SSTR4 Missense_Mutation p.R239H 0.31 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 20 23065690 23065690 C A CD93 Missense_Mutation p.E380D 0.43 tolerated(0.42) benign(0.009) TCGA-XK-AAIW-01 20 23351111 23351111 C T GZF1 3'UTR 0.46 TCGA-XK-AAIW-01 20 2397994 2397994 G T TGM6 Missense_Mutation p.D485Y 0.27 deleterious(0) possibly_damaging(0.875) TCGA-XK-AAIW-01 20 2442537 2442537 G A SNRPB Intron 0.41 TCGA-XK-AAIW-01 20 2443219 2443219 C T SNRPB Intron 0.10 TCGA-XK-AAIW-01 20 24944422 24944422 C T APMAP 3'UTR 0.25 TCGA-XK-AAIW-01 20 24959425 24959425 C T APMAP Silent p.P102P 0.33 TCGA-XK-AAIW-01 20 25257937 25257937 C T PYGB Missense_Mutation p.S277F 0.19 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 20 25259028 25259028 G A PYGB Missense_Mutation p.R310H 0.28 deleterious(0.04) possibly_damaging(0.661) TCGA-XK-AAIW-01 20 25263878 25263878 G A PYGB Missense_Mutation p.E529K 0.38 tolerated(0.65) benign(0.019) TCGA-XK-AAIW-01 20 25276269 25276269 A G PYGB Missense_Mutation p.Y781C 0.42 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 20 2552882 2552882 G T TMC2 Missense_Mutation p.K204N 0.39 deleterious(0.03) probably_damaging(0.947) TCGA-XK-AAIW-01 20 25596943 25596943 C T NANP Missense_Mutation p.R122Q 0.41 tolerated(0.11) possibly_damaging(0.714) TCGA-XK-AAIW-01 20 25656373 25656374 - A ZNF337 Frame_Shift_Ins p.C518Lfs*33 0.33 TCGA-XK-AAIW-01 20 25657081 25657081 C T ZNF337 Silent p.V281V 0.33 TCGA-XK-AAIW-01 20 2641313 2641313 C A IDH3B Intron 0.37 TCGA-XK-AAIW-01 20 2774860 2774860 C T CPXM1 Silent p.E727E 0.41 TCGA-XK-AAIW-01 20 2819013 2819013 G A PCED1A Missense_Mutation p.R236W 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 2845812 2845812 C T VPS16 Missense_Mutation p.R675W 0.31 deleterious(0) probably_damaging(0.916) TCGA-XK-AAIW-01 20 2967425 2967425 A G PTPRA Missense_Mutation p.I153V 0.35 tolerated(0.22) benign(0.238) TCGA-XK-AAIW-01 20 3007406 3007406 G A PTPRA Missense_Mutation p.R563H 0.53 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 30227798 30227798 C T COX4I2 Missense_Mutation p.P49S 0.26 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 20 30507689 30507689 G A TTLL9 Missense_Mutation p.G176D 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 30659548 30659548 C A HCK Missense_Mutation p.P49H 0.25 tolerated(0.1) possibly_damaging(0.669) TCGA-XK-AAIW-01 20 30659555 30659555 C T HCK Silent p.Y51Y 0.56 TCGA-XK-AAIW-01 20 30784255 30784255 C T PLAGL2 Silent p.%3D 0.42 TCGA-XK-AAIW-01 20 30785232 30785232 G A PLAGL2 Silent p.L172L 0.69 TCGA-XK-AAIW-01 20 30803241 30803241 C T POFUT1 Missense_Mutation p.T139M 0.20 deleterious(0.04) probably_damaging(0.977) TCGA-XK-AAIW-01 20 30897908 30897908 C T KIF3B Missense_Mutation p.R110C 0.49 tolerated(0.17) possibly_damaging(0.672) TCGA-XK-AAIW-01 20 30915393 30915393 G A KIF3B Missense_Mutation p.V633M 0.17 tolerated(0.13) benign(0.206) TCGA-XK-AAIW-01 20 31021232 31021232 C T ASXL1 Missense_Mutation p.R411C 0.48 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 20 31022609 31022609 G A ASXL1 Silent p.P698P 0.52 TCGA-XK-AAIW-01 20 31025073 31025073 G A ASXL1 Missense_Mutation p.G1520S 0.43 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 20 31294522 31294522 C T COMMD7 Silent p.A94A 0.40 TCGA-XK-AAIW-01 20 31374388 31374388 C T DNMT3B Silent p.G129G 0.47 TCGA-XK-AAIW-01 20 31386391 31386391 G A DNMT3B Missense_Mutation p.R539Q 0.18 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 20 31571729 31571729 C T SUN5 Silent p.A337A 0.35 TCGA-XK-AAIW-01 20 31575487 31575487 C T SUN5 Silent p.Q236Q 0.53 TCGA-XK-AAIW-01 20 31643282 31643282 C T BPIFB3 Missense_Mutation p.A18V 0.16 tolerated(0.4) benign(0) TCGA-XK-AAIW-01 20 31652621 31652621 C T BPIFB3 Silent p.G298G 0.14 TCGA-XK-AAIW-01 20 31805296 31805296 G A BPIFA3 5'UTR 0.10 TCGA-XK-AAIW-01 20 31889214 31889214 C T BPIFB1 Missense_Mutation p.S308F 0.40 tolerated(0.47) benign(0.004) TCGA-XK-AAIW-01 20 31998065 31998065 G A SNTA1 Silent p.G371G 0.53 TCGA-XK-AAIW-01 20 32211077 32211077 A G CBFA2T2 Missense_Mutation p.N232D 0.38 deleterious(0.02) benign(0.42) TCGA-XK-AAIW-01 20 32267636 32267636 C T E2F1 Missense_Mutation p.R166H 0.87 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 32660076 32660076 C T RALY Missense_Mutation p.R66C 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 20 32873427 32873427 C T AHCY Missense_Mutation p.R329Q 0.29 tolerated_low_confidence(0.37) benign(0.002) TCGA-XK-AAIW-01 20 32981637 32981637 A G ITCH Missense_Mutation p.Q7R 0.34 tolerated_low_confidence(1) benign(0.001) TCGA-XK-AAIW-01 20 33440320 33440320 G A GGT7 Silent p.L447L 0.15 TCGA-XK-AAIW-01 20 33447281 33447281 C T GGT7 Missense_Mutation p.A327T 0.58 tolerated(0.26) benign(0.008) TCGA-XK-AAIW-01 20 33590080 33590080 G A MYH7B 3'UTR 0.32 TCGA-XK-AAIW-01 20 33722573 33722573 G A EDEM2 Missense_Mutation p.R224C 0.28 deleterious(0) possibly_damaging(0.652) TCGA-XK-AAIW-01 20 33762558 33762558 G A PROCR Missense_Mutation p.V42M 0.40 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 20 33764034 33764034 T C PROCR Missense_Mutation p.V129A 0.42 tolerated(0.39) benign(0.158) TCGA-XK-AAIW-01 20 33874706 33874706 G A FAM83C Missense_Mutation p.R626W 0.45 tolerated_low_confidence(0.12) benign(0.01) TCGA-XK-AAIW-01 20 33875362 33875362 G T FAM83C Missense_Mutation p.P407H 0.55 tolerated_low_confidence(0.11) benign(0.004) TCGA-XK-AAIW-01 20 34060621 34060621 C T CEP250 Missense_Mutation p.R392C 0.33 benign(0.028) TCGA-XK-AAIW-01 20 34067059 34067059 C T CEP250 Missense_Mutation p.R700C 0.30 benign(0.002) TCGA-XK-AAIW-01 20 34091237 34091237 C T CEP250 Silent p.I1680I 0.33 TCGA-XK-AAIW-01 20 34099321 34099321 G A CEP250 Missense_Mutation p.A2399T 0.15 probably_damaging(0.999) TCGA-XK-AAIW-01 20 34135185 34135185 G A ERGIC3 Silent p.T130T 0.16 TCGA-XK-AAIW-01 20 34243008 34243008 C T RBM12 Missense_Mutation p.M79I 0.38 deleterious(0) unknown(0) TCGA-XK-AAIW-01 20 34309768 34309768 T C RBM39 Missense_Mutation p.N240S 0.33 tolerated(0.32) benign(0.004) TCGA-XK-AAIW-01 20 34843606 34843606 C T AAR2 Missense_Mutation p.A365V 0.16 tolerated(0.26) benign(0.079) TCGA-XK-AAIW-01 20 35060648 35060648 C T DLGAP4 Silent p.D176D 0.39 TCGA-XK-AAIW-01 20 3520965 3520965 G A ATRN Silent p.P197P 0.37 TCGA-XK-AAIW-01 20 35399356 35399356 C A DSN1 Missense_Mutation p.R92M 0.50 deleterious(0) probably_damaging(0.975) TCGA-XK-AAIW-01 20 35443659 35443659 C T SOGA1 Missense_Mutation p.R729Q 0.45 tolerated(0.13) benign(0.163) TCGA-XK-AAIW-01 20 35539724 35539724 A T SAMHD1 Silent p.A389A 0.44 TCGA-XK-AAIW-01 20 35545171 35545171 C T SAMHD1 Missense_Mutation p.R339H 0.37 deleterious(0) possibly_damaging(0.859) TCGA-XK-AAIW-01 20 35690594 35690594 C T RBL1 Missense_Mutation p.A326T 0.10 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 20 35833290 35833290 C T RPN2 Missense_Mutation p.P226S 0.09 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 20 36641108 36641108 C T TTI1 Missense_Mutation p.A371T 0.42 tolerated(0.6) benign(0.001) TCGA-XK-AAIW-01 20 3673761 3673761 G A SIGLEC1 Missense_Mutation p.R1176C 0.32 deleterious(0.01) possibly_damaging(0.841) TCGA-XK-AAIW-01 20 36767992 36767992 G A TGM2 Silent p.Y388Y 0.35 TCGA-XK-AAIW-01 20 36770599 36770599 G A TGM2 Silent p.L288L 0.26 TCGA-XK-AAIW-01 20 36789870 36789870 G A TGM2 Missense_Mutation p.R48C 0.32 tolerated(0.08) probably_damaging(0.979) TCGA-XK-AAIW-01 20 3682283 3682283 G A SIGLEC1 Missense_Mutation p.P412S 0.38 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 20 36846737 36846737 C T KIAA1755 Missense_Mutation p.R863Q 0.14 tolerated(0.58) benign(0.011) TCGA-XK-AAIW-01 20 36937458 36937458 C A BPI Missense_Mutation p.F128L 0.23 tolerated(0.07) possibly_damaging(0.56) TCGA-XK-AAIW-01 20 37168467 37168467 G A RALGAPB Missense_Mutation p.V810M 0.20 tolerated(0.08) possibly_damaging(0.783) TCGA-XK-AAIW-01 20 37194073 37194073 G A RALGAPB Missense_Mutation p.A1257T 0.37 tolerated(0.05) possibly_damaging(0.891) TCGA-XK-AAIW-01 20 37659397 37659397 A C DHX35 Missense_Mutation p.Y645S 0.14 deleterious(0.04) benign(0.084) TCGA-XK-AAIW-01 20 37662960 37662960 G A DHX35 Silent p.T689T 0.14 TCGA-XK-AAIW-01 20 3784075 3784075 C T CDC25B Missense_Mutation p.R461C 0.51 deleterious(0) possibly_damaging(0.907) TCGA-XK-AAIW-01 20 3888801 3888801 G A PANK2 Missense_Mutation p.R286H 0.50 deleterious(0.04) benign(0.195) TCGA-XK-AAIW-01 20 3915668 3915668 C T RNF24 Missense_Mutation p.C115Y 0.25 deleterious(0.01) benign(0.264) TCGA-XK-AAIW-01 20 39986551 39986551 C T LPIN3 Missense_Mutation p.A690V 0.48 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 20 40033327 40033327 C T CHD6 Missense_Mutation p.C2685Y 0.31 deleterious_low_confidence(0) benign(0.025) TCGA-XK-AAIW-01 20 40076586 40076586 A G CHD6 Missense_Mutation p.Y1237H 0.16 tolerated(0.06) probably_damaging(0.915) TCGA-XK-AAIW-01 20 40102132 40102132 G A CHD6 Nonsense_Mutation p.R832* 0.48 TCGA-XK-AAIW-01 20 40126825 40126825 G A CHD6 Silent p.Y319Y 0.40 TCGA-XK-AAIW-01 20 409724 409724 C T RBCK1 Missense_Mutation p.R480C 0.53 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 4163429 4163429 G A SMOX Missense_Mutation p.V435I 0.19 tolerated(0.24) benign(0.001) TCGA-XK-AAIW-01 20 4167394 4167394 G A SMOX Intron 0.15 TCGA-XK-AAIW-01 20 42169534 42169534 C T L3MBTL1 Intron 0.31 TCGA-XK-AAIW-01 20 42315709 42315709 G T MYBL2 Missense_Mutation p.G166V 0.55 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 20 42320929 42320929 C T MYBL2 Silent p.G211G 0.44 TCGA-XK-AAIW-01 20 42331427 42331427 C T MYBL2 Missense_Mutation p.R417C 0.43 deleterious(0.04) probably_damaging(0.915) TCGA-XK-AAIW-01 20 42635356 42635356 C T TOX2 Missense_Mutation p.A112V 0.42 tolerated(0.16) probably_damaging(0.99) TCGA-XK-AAIW-01 20 42694485 42694485 G A TOX2 Missense_Mutation p.R365H 0.48 tolerated(0.15) possibly_damaging(0.742) TCGA-XK-AAIW-01 20 43135507 43135507 G A SERINC3 Silent p.C248C 0.40 TCGA-XK-AAIW-01 20 43386308 43386308 G A RIMS4 Intron 0.37 TCGA-XK-AAIW-01 20 43530232 43530232 C T YWHAB Nonsense_Mutation p.R20* 0.43 TCGA-XK-AAIW-01 20 43703711 43703711 C T STK4 Missense_Mutation p.P453L 0.31 tolerated(0.28) benign(0.056) TCGA-XK-AAIW-01 20 43851292 43851292 G A SEMG2 Missense_Mutation p.G340D 0.31 deleterious(0.04) possibly_damaging(0.871) TCGA-XK-AAIW-01 20 43932934 43932934 C T MATN4 Missense_Mutation p.V193I 0.37 probably_damaging(0.959) TCGA-XK-AAIW-01 20 43940962 43940962 T C RBPJL Silent p.G182G 0.44 TCGA-XK-AAIW-01 20 43955854 43955854 C A SDC4 3'UTR 0.43 TCGA-XK-AAIW-01 20 43956030 43956030 G A SDC4 Silent p.G157G 0.44 TCGA-XK-AAIW-01 20 43961680 43961680 C A SDC4 Nonsense_Mutation p.E77* 0.17 TCGA-XK-AAIW-01 20 44003714 44003714 C T TP53TG5 Missense_Mutation p.A245T 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-XK-AAIW-01 20 44049219 44049219 G A PIGT Missense_Mutation p.V307I 0.12 tolerated(0.45) benign(0.022) TCGA-XK-AAIW-01 20 44184457 44184457 G A WFDC8 Missense_Mutation p.R110C 0.36 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 20 44433838 44433838 C T DNTTIP1 Silent p.A219A 0.16 TCGA-XK-AAIW-01 20 44469548 44469548 G A SNX21 Missense_Mutation p.V240M 0.41 deleterious(0.01) possibly_damaging(0.661) TCGA-XK-AAIW-01 20 44505430 44505430 C T ZSWIM3 Missense_Mutation p.A78V 0.46 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 20 44505965 44505965 G A ZSWIM3 Silent p.A256A 0.55 TCGA-XK-AAIW-01 20 44512697 44512697 C T ZSWIM1 3'UTR 0.29 TCGA-XK-AAIW-01 20 44540198 44540198 C T PLTP 5'UTR 0.50 TCGA-XK-AAIW-01 20 44576010 44576010 C T PCIF1 Missense_Mutation p.R606C 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 44869715 44869715 C T CDH22 Missense_Mutation p.R146H 0.29 deleterious(0.05) possibly_damaging(0.741) TCGA-XK-AAIW-01 20 45188748 45188748 G A SLC13A3 Silent p.G574G 0.43 TCGA-XK-AAIW-01 20 45355587 45355587 C A SLC2A10 Missense_Mutation p.A458D 0.44 deleterious(0.02) possibly_damaging(0.529) TCGA-XK-AAIW-01 20 45362480 45362480 C T SLC2A10 3'UTR 0.35 TCGA-XK-AAIW-01 20 45797813 45797813 C T EYA2 Silent p.D335D 0.34 TCGA-XK-AAIW-01 20 45801489 45801489 A G EYA2 Missense_Mutation p.Y391C 0.40 deleterious(0) probably_damaging(0.976) TCGA-XK-AAIW-01 20 45867591 45867591 C T ZMYND8 Intron 0.33 TCGA-XK-AAIW-01 20 45867671 45867671 C T ZMYND8 Silent p.P832P 0.39 TCGA-XK-AAIW-01 20 45867699 45867699 C A ZMYND8 Missense_Mutation p.R823M 0.15 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 20 45905186 45905186 C T ZMYND8 Missense_Mutation p.R451H 0.53 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-XK-AAIW-01 20 45905189 45905189 G A ZMYND8 Missense_Mutation p.P450L 0.36 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-XK-AAIW-01 20 4680520 4680520 C T PRNP Silent p.Y218Y 0.44 TCGA-XK-AAIW-01 20 47270020 47270020 G A PREX1 Missense_Mutation p.A742V 0.38 tolerated(0.14) possibly_damaging(0.881) TCGA-XK-AAIW-01 20 47706244 47706244 C T CSE1L Silent p.R714R 0.19 TCGA-XK-AAIW-01 20 47864034 47864034 G A ZNFX1 Missense_Mutation p.R1843C 0.45 deleterious(0) possibly_damaging(0.77) TCGA-XK-AAIW-01 20 47864562 47864562 G A ZNFX1 Silent p.L1667L 0.38 TCGA-XK-AAIW-01 20 47865182 47865182 C T ZNFX1 Missense_Mutation p.R1460H 0.42 tolerated(0.16) benign(0.003) TCGA-XK-AAIW-01 20 47872451 47872451 T - ZNFX1 Frame_Shift_Del p.R900Efs*2 0.28 TCGA-XK-AAIW-01 20 47881294 47881294 G A ZNFX1 Missense_Mutation p.R704C 0.38 deleterious(0) probably_damaging(0.967) TCGA-XK-AAIW-01 20 47991512 47991512 G T KCNB1 Silent p.S195S 0.48 TCGA-XK-AAIW-01 20 48129687 48129687 C T PTGIS Missense_Mutation p.R379H 0.34 tolerated(0.05) benign(0.04) TCGA-XK-AAIW-01 20 48472001 48472001 C T SLC9A8 Missense_Mutation p.A215V 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 20 49191125 49191125 A G PTPN1 Silent p.L142L 0.33 TCGA-XK-AAIW-01 20 49225025 49225025 G A FAM65C Missense_Mutation p.T282M 0.45 deleterious(0.04) possibly_damaging(0.515) TCGA-XK-AAIW-01 20 49552742 49552742 G A DPM1 Silent p.Y207Y 0.32 TCGA-XK-AAIW-01 20 50217686 50217686 G A ATP9A 3'UTR 0.36 TCGA-XK-AAIW-01 20 50226672 50226672 G A ATP9A Silent p.S868S 0.41 TCGA-XK-AAIW-01 20 50230313 50230313 C T ATP9A Missense_Mutation p.G825D 0.38 tolerated(0.19) benign(0.359) TCGA-XK-AAIW-01 20 50241791 50241791 C A ATP9A Missense_Mutation p.E652D 0.55 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 20 50401076 50401076 C T SALL4 Missense_Mutation p.V964M 0.43 tolerated(0.07) benign(0.035) TCGA-XK-AAIW-01 20 50407775 50407775 C T SALL4 Missense_Mutation p.G416D 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 5159511 5159511 G A CDS2 Silent p.T146T 0.42 TCGA-XK-AAIW-01 20 5169772 5169772 G A CDS2 Silent p.S347S 0.14 TCGA-XK-AAIW-01 20 5170424 5170424 G A CDS2 Missense_Mutation p.R382H 0.36 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 20 51870105 51870105 C T TSHZ2 Silent p.S36S 0.44 TCGA-XK-AAIW-01 20 51872367 51872367 C T TSHZ2 Silent p.H790H 0.43 TCGA-XK-AAIW-01 20 51872622 51872622 T C TSHZ2 Silent p.S875S 0.16 TCGA-XK-AAIW-01 20 51872787 51872787 C A TSHZ2 Missense_Mutation p.D930E 0.39 tolerated(0.08) probably_damaging(0.999) TCGA-XK-AAIW-01 20 52188260 52188261 - T ZNF217 Intron 0.28 TCGA-XK-AAIW-01 20 5283038 5283038 C T PROKR2 Missense_Mutation p.R268H 0.21 tolerated(0.08) benign(0.192) TCGA-XK-AAIW-01 20 55211734 55211734 G A TFAP2C Missense_Mutation p.A331T 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 20 55746114 55746114 C T BMP7 Silent p.T399T 0.26 TCGA-XK-AAIW-01 20 56090704 56090704 A T CTCFL Intron 0.42 TCGA-XK-AAIW-01 20 56185392 56185392 C T ZBP1 Silent p.S302S 0.06 TCGA-XK-AAIW-01 20 56227286 56227286 C T PMEPA1 Silent p.P229P 0.50 TCGA-XK-AAIW-01 20 56735727 56735727 C - C20orf85 Frame_Shift_Del p.P90Qfs*19 0.31 TCGA-XK-AAIW-01 20 57243055 57243055 G A STX16 Missense_Mutation p.V89I 0.21 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 20 57243061 57243061 C T STX16 Missense_Mutation p.R91W 0.33 deleterious(0) probably_damaging(0.978) TCGA-XK-AAIW-01 20 57246283 57246283 G A STX16 Missense_Mutation p.R241H 0.38 tolerated(0.06) benign(0.01) TCGA-XK-AAIW-01 20 57269496 57269496 G A NPEPL1 Missense_Mutation p.E119K 0.31 deleterious(0.04) benign(0.017) TCGA-XK-AAIW-01 20 57564939 57564939 G A NELFCD Silent p.T246T 0.41 TCGA-XK-AAIW-01 20 57597952 57597952 G A TUBB1 Missense_Mutation p.R37H 0.31 tolerated_low_confidence(1) benign(0.001) TCGA-XK-AAIW-01 20 57829414 57829414 A T ZNF831 Silent p.G1550G 0.41 TCGA-XK-AAIW-01 20 57899383 57899383 C T EDN3 Intron 0.08 TCGA-XK-AAIW-01 20 58476773 58476773 C T SYCP2 Missense_Mutation p.A376T 0.26 tolerated(0.28) benign(0.061) TCGA-XK-AAIW-01 20 58562607 58562607 T C CDH26 Missense_Mutation p.F313L 0.43 deleterious(0.05) possibly_damaging(0.846) TCGA-XK-AAIW-01 20 58562618 58562618 G A CDH26 Silent p.L316L 0.42 TCGA-XK-AAIW-01 20 58564159 58564159 C T CDH26 Silent p.G408G 0.32 TCGA-XK-AAIW-01 20 58571005 58571005 G A CDH26 Missense_Mutation p.C595Y 0.45 deleterious(0.03) benign(0.356) TCGA-XK-AAIW-01 20 5924590 5924590 G A TRMT6 Intron 0.22 TCGA-XK-AAIW-01 20 60551219 60551219 C T TAF4 3'UTR 0.09 TCGA-XK-AAIW-01 20 60581673 60581673 C T TAF4 Missense_Mutation p.A706T 0.36 possibly_damaging(0.604) TCGA-XK-AAIW-01 20 60701437 60701437 C T LSM14B Silent p.Y123Y 0.30 TCGA-XK-AAIW-01 20 60733759 60733759 G A SS18L1 Missense_Mutation p.C34Y 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 20 60773769 60773769 C T MTG2 Missense_Mutation p.A183V 0.43 tolerated(0.08) possibly_damaging(0.612) TCGA-XK-AAIW-01 20 60859167 60859167 C T OSBPL2 Missense_Mutation p.S313L 0.50 tolerated(0.38) benign(0.149) TCGA-XK-AAIW-01 20 60889421 60889421 G A LAMA5 Missense_Mutation p.P2815S 0.30 benign(0.001) TCGA-XK-AAIW-01 20 60892518 60892518 C T LAMA5 Missense_Mutation p.R2465Q 0.32 benign(0.087) TCGA-XK-AAIW-01 20 60895811 60895811 G A LAMA5 Missense_Mutation p.S2211F 0.22 benign(0.123) TCGA-XK-AAIW-01 20 60904261 60904261 G A LAMA5 Missense_Mutation p.R1390W 0.38 probably_damaging(0.937) TCGA-XK-AAIW-01 20 60904282 60904282 C T LAMA5 Missense_Mutation p.V1383I 0.45 benign(0.09) TCGA-XK-AAIW-01 20 60911481 60911481 G A LAMA5 Silent p.C746C 0.39 TCGA-XK-AAIW-01 20 61340858 61340858 C T NTSR1 Missense_Mutation p.T100M 0.29 deleterious(0.02) probably_damaging(0.947) TCGA-XK-AAIW-01 20 61340973 61340973 C T NTSR1 Silent p.D138D 0.44 TCGA-XK-AAIW-01 20 61389666 61389666 G A NTSR1 Missense_Mutation p.R322Q 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 20 61467852 61467852 G A COL9A3 Missense_Mutation p.R524H 0.44 tolerated(1) benign(0.015) TCGA-XK-AAIW-01 20 61511164 61511164 G A DIDO1 Silent p.S2048S 0.39 TCGA-XK-AAIW-01 20 61527732 61527732 G A DIDO1 Silent p.S689S 0.48 TCGA-XK-AAIW-01 20 61538606 61538606 C T DIDO1 Missense_Mutation p.A423T 0.38 benign(0.191) TCGA-XK-AAIW-01 20 61982381 61982381 T C CHRNA4 Splice_Site p.X128_splice 0.24 TCGA-XK-AAIW-01 20 62163964 62163964 C T PTK6 Silent p.A249A 0.43 TCGA-XK-AAIW-01 20 62172602 62172602 G T SRMS Silent p.V409V 0.37 TCGA-XK-AAIW-01 20 62173545 62173545 C T SRMS Missense_Mutation p.R306H 0.20 tolerated(0.1) benign(0.064) TCGA-XK-AAIW-01 20 62195572 62195572 G T HELZ2 Missense_Mutation p.L1535I 0.30 tolerated(0.37) benign(0.438) TCGA-XK-AAIW-01 20 62324233 62324233 G T RTEL1 Missense_Mutation p.A934S 0.35 tolerated(0.32) benign(0.09) TCGA-XK-AAIW-01 20 62421673 62421673 G A ZBTB46 Silent p.I146I 0.50 TCGA-XK-AAIW-01 20 62551083 62551083 G A DNAJC5 Intron 0.47 TCGA-XK-AAIW-01 20 62730088 62730088 G A OPRL1 Missense_Mutation p.R350H 0.28 deleterious(0.01) possibly_damaging(0.794) TCGA-XK-AAIW-01 20 62737666 62737666 G A NPBWR2 Silent p.G173G 0.38 TCGA-XK-AAIW-01 20 62848581 62848581 G A MYT1 Missense_Mutation p.R598H 0.42 probably_damaging(1) TCGA-XK-AAIW-01 20 6750939 6750939 C T BMP2 Missense_Mutation p.R56W 0.32 deleterious(0.02) probably_damaging(0.993) TCGA-XK-AAIW-01 20 6751119 6751119 G T BMP2 Nonsense_Mutation p.E116* 0.43 TCGA-XK-AAIW-01 20 896759 896759 G A ANGPT4 Silent p.C33C 0.42 TCGA-XK-AAIW-01 20 9543668 9543668 C T PAK7 Missense_Mutation p.V496M 0.28 deleterious(0) possibly_damaging(0.751) TCGA-XK-AAIW-01 21 10862625 10862625 G A IGHV1OR21-1 Missense_Mutation p.D2N 0.17 deleterious(0.02) possibly_damaging(0.827) TCGA-XK-AAIW-01 21 10933852 10933852 C A TPTE Missense_Mutation p.D343Y 0.17 deleterious(0) possibly_damaging(0.612) TCGA-XK-AAIW-01 21 10934954 10934954 C T TPTE Missense_Mutation p.R280Q 0.12 tolerated(0.84) benign(0.069) TCGA-XK-AAIW-01 21 10944758 10944758 T C TPTE Missense_Mutation p.N159S 0.13 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 21 11058218 11058218 C A BAGE2 RNA 0.23 TCGA-XK-AAIW-01 21 11058296 11058296 C T BAGE2 RNA 0.05 TCGA-XK-AAIW-01 21 15516970 15516970 C T LIPI Missense_Mutation p.M444I 0.63 deleterious(0.01) benign(0.149) TCGA-XK-AAIW-01 21 15746111 15746111 G A HSPA13 Missense_Mutation p.R415C 0.63 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 21 16339101 16339101 C T NRIP1 Nonsense_Mutation p.W471* 0.34 TCGA-XK-AAIW-01 21 16339794 16339794 T C NRIP1 Silent p.L240L 0.75 TCGA-XK-AAIW-01 21 18966550 18966550 G T BTG3 Missense_Mutation p.P251H 0.33 tolerated(0.15) probably_damaging(1) TCGA-XK-AAIW-01 21 26961154 26961154 C T MRPL39 Missense_Mutation p.R321Q 0.67 tolerated(0.31) benign(0.022) TCGA-XK-AAIW-01 21 28209961 28209961 G A ADAMTS1 Silent p.S947S 0.82 TCGA-XK-AAIW-01 21 28214308 28214308 T C ADAMTS1 Missense_Mutation p.D360G 0.74 deleterious(0) possibly_damaging(0.878) TCGA-XK-AAIW-01 21 28296614 28296615 - A ADAMTS5 Frame_Shift_Ins p.V851Cfs*14 0.11 TCGA-XK-AAIW-01 21 30308907 30308907 T C LTN1 Missense_Mutation p.E1578G 0.66 deleterious(0) benign(0.041) TCGA-XK-AAIW-01 21 30415788 30415788 G T USP16 Silent p.V408V 0.57 TCGA-XK-AAIW-01 21 30927538 30927538 C T GRIK1 Nonsense_Mutation p.W814* 0.59 TCGA-XK-AAIW-01 21 30959709 30959709 G T GRIK1 Missense_Mutation p.S590R 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 21 31744251 31744251 G A KRTAP13-2 Missense_Mutation p.T94M 0.20 tolerated(0.06) benign(0.223) TCGA-XK-AAIW-01 21 31864120 31864120 G A KRTAP19-3 Silent p.G52G 0.68 TCGA-XK-AAIW-01 21 31933435 31933435 C T KRTAP19-7 Nonsense_Mutation p.W58* 0.65 TCGA-XK-AAIW-01 21 32410757 32410757 G A KRTAP19-8 Silent p.S2S 0.67 TCGA-XK-AAIW-01 21 32554924 32554924 G A TIAM1 Missense_Mutation p.R901C 0.52 deleterious(0.05) benign(0.011) TCGA-XK-AAIW-01 21 34894556 34894556 G A GART Silent p.I444I 0.65 TCGA-XK-AAIW-01 21 34924073 34924073 T C SON Silent p.L846L 0.71 TCGA-XK-AAIW-01 21 34958331 34958331 C T DONSON Missense_Mutation p.V187I 0.52 tolerated(0.49) benign(0.008) TCGA-XK-AAIW-01 21 35257765 35257765 C T ITSN1 Silent p.G1594G 0.71 TCGA-XK-AAIW-01 21 37781094 37781094 A G CHAF1B Missense_Mutation p.T265A 0.23 tolerated(0.14) possibly_damaging(0.893) TCGA-XK-AAIW-01 21 38072205 38072205 C T SIM2 Silent p.R53R 0.89 TCGA-XK-AAIW-01 21 38311188 38311188 G A HLCS 5'UTR 0.11 TCGA-XK-AAIW-01 21 39580630 39580630 G T DSCR10 RNA 0.72 TCGA-XK-AAIW-01 21 40568702 40568702 C T BRWD1 Missense_Mutation p.G2098D 0.62 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-XK-AAIW-01 21 40582837 40582837 T - BRWD1 Frame_Shift_Del p.S1307Afs*19 0.31 TCGA-XK-AAIW-01 21 40781905 40781905 C T LCA5L Missense_Mutation p.D428N 0.52 tolerated(0.06) possibly_damaging(0.629) TCGA-XK-AAIW-01 21 41033253 41033253 G T B3GALT5 Missense_Mutation p.R256I 0.41 tolerated(0.14) benign(0.199) TCGA-XK-AAIW-01 21 41424022 41424022 G A DSCAM Missense_Mutation p.T1683M 0.28 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 21 41710040 41710040 C T DSCAM Missense_Mutation p.V591M 0.70 deleterious(0) possibly_damaging(0.682) TCGA-XK-AAIW-01 21 42622768 42622768 C T BACE2 Silent p.I358I 0.65 TCGA-XK-AAIW-01 21 42823102 42823102 C T MX1 Missense_Mutation p.R481W 0.59 tolerated(0.12) benign(0.081) TCGA-XK-AAIW-01 21 43161904 43161904 C T RIPK4 Silent p.V483V 0.69 TCGA-XK-AAIW-01 21 43282055 43282055 G A PRDM15 Silent p.H227H 0.70 TCGA-XK-AAIW-01 21 43327200 43327200 C T C2CD2 Missense_Mutation p.D407N 0.72 deleterious(0.04) probably_damaging(0.965) TCGA-XK-AAIW-01 21 44189204 44189204 C T PDE9A Missense_Mutation p.A510V 0.63 deleterious(0) possibly_damaging(0.571) TCGA-XK-AAIW-01 21 44323568 44323568 C T NDUFV3 Missense_Mutation p.T149M 0.69 tolerated(0.06) possibly_damaging(0.882) TCGA-XK-AAIW-01 21 44949656 44949656 C T HSF2BP Missense_Mutation p.R328H 0.59 tolerated(0.14) probably_damaging(0.984) TCGA-XK-AAIW-01 21 45172433 45172433 C T PDXK Missense_Mutation p.T182I 0.71 tolerated(0.08) possibly_damaging(0.692) TCGA-XK-AAIW-01 21 45547935 45547935 C T PWP2 Missense_Mutation p.R755C 0.21 deleterious(0.02) benign(0.009) TCGA-XK-AAIW-01 21 45773734 45773734 G A TRPM2 Missense_Mutation p.G51S 0.55 tolerated_low_confidence(0.39) benign(0.009) TCGA-XK-AAIW-01 21 45784133 45784133 G A TRPM2 Missense_Mutation p.V131I 0.57 tolerated(0.18) benign(0.009) TCGA-XK-AAIW-01 21 45960029 45960029 G A KRTAP10-1 Missense_Mutation p.A2V 0.75 deleterious(0.03) possibly_damaging(0.483) TCGA-XK-AAIW-01 21 46624623 46624623 C A ADARB1 Silent p.L613L 0.68 TCGA-XK-AAIW-01 21 46888394 46888394 G A COL18A1 Silent p.A295A 0.75 TCGA-XK-AAIW-01 21 46907409 46907409 G A COL18A1 Missense_Mutation p.A808T 0.69 possibly_damaging(0.685) TCGA-XK-AAIW-01 21 47556899 47556899 C T FTCD Intron 0.90 TCGA-XK-AAIW-01 21 47674369 47674369 A G MCM3AP Missense_Mutation p.V1358A 0.76 deleterious(0.02) benign(0.002) TCGA-XK-AAIW-01 21 47697477 47697477 G A MCM3AP Missense_Mutation p.R608C 0.77 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 21 47704923 47704923 A G MCM3AP Missense_Mutation p.F93S 0.76 tolerated(0.15) probably_damaging(0.996) TCGA-XK-AAIW-01 21 47821621 47821621 C T PCNT Missense_Mutation p.R1650W 0.62 benign(0.137) TCGA-XK-AAIW-01 21 47851715 47851715 C T PCNT Silent p.C2779C 0.40 TCGA-XK-AAIW-01 21 47855835 47855835 C T PCNT Missense_Mutation p.R2924C 0.63 possibly_damaging(0.876) TCGA-XK-AAIW-01 21 47959821 47959821 C T DIP2A Silent p.N651N 0.56 TCGA-XK-AAIW-01 22 16287735 16287735 C T POTEH Missense_Mutation p.D51N 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-XK-AAIW-01 22 17288731 17288731 G A XKR3 Missense_Mutation p.A78V 0.44 tolerated(0.34) benign(0.002) TCGA-XK-AAIW-01 22 17583129 17583129 G A IL17RA Silent p.L233L 0.45 TCGA-XK-AAIW-01 22 17584433 17584433 G A IL17RA Missense_Mutation p.R271H 0.69 tolerated(0.18) benign(0) TCGA-XK-AAIW-01 22 17600946 17600946 G A CECR6 Silent p.L358L 0.25 TCGA-XK-AAIW-01 22 17618851 17618851 C T CECR5 3'UTR 0.50 TCGA-XK-AAIW-01 22 17619480 17619480 G A CECR5 Missense_Mutation p.R299W 0.36 tolerated(0.05) benign(0.045) TCGA-XK-AAIW-01 22 18022110 18022110 T C CECR2 Missense_Mutation p.Y739H 0.36 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 18072396 18072396 C T SLC25A18 Silent p.G257G 0.39 TCGA-XK-AAIW-01 22 18300494 18300494 G A MICAL3 Missense_Mutation p.R1645C 0.35 benign(0.132) TCGA-XK-AAIW-01 22 18378157 18378157 G T MICAL3 Missense_Mutation p.L448M 0.47 possibly_damaging(0.888) TCGA-XK-AAIW-01 22 18613794 18613794 A G TUBA8 Missense_Mutation p.E414G 0.42 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-XK-AAIW-01 22 19119414 19119414 C T TSSK2 Missense_Mutation p.R168C 0.36 deleterious(0) possibly_damaging(0.738) TCGA-XK-AAIW-01 22 19119445 19119445 C T TSSK2 Missense_Mutation p.S178L 0.28 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 22 19124849 19124849 C A DGCR14 Missense_Mutation p.G341V 0.51 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 22 19126686 19126686 C T DGCR14 Missense_Mutation p.A270T 0.64 tolerated(0.08) possibly_damaging(0.84) TCGA-XK-AAIW-01 22 19178854 19178854 G A CLTCL1 Missense_Mutation p.R1429W 0.45 deleterious(0.01) benign(0.236) TCGA-XK-AAIW-01 22 19210286 19210286 C T CLTCL1 Missense_Mutation p.R780H 0.36 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 22 19211575 19211575 G T CLTCL1 Missense_Mutation p.L711I 0.48 tolerated(0.05) possibly_damaging(0.773) TCGA-XK-AAIW-01 22 19230441 19230441 C T CLTCL1 Missense_Mutation p.A180T 0.38 tolerated(0.4) probably_damaging(0.974) TCGA-XK-AAIW-01 22 19455394 19455394 A G UFD1L Splice_Site p.X141_splice 0.16 TCGA-XK-AAIW-01 22 19502541 19502541 C T CDC45 Silent p.S502S 0.33 TCGA-XK-AAIW-01 22 19504132 19504132 G A CDC45 Missense_Mutation p.G540D 0.44 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 19838799 19838799 T C C22orf29 Missense_Mutation p.E329G 0.14 tolerated_low_confidence(0.08) benign(0.277) TCGA-XK-AAIW-01 22 19864626 19864626 G A TXNRD2 3'UTR 0.56 TCGA-XK-AAIW-01 22 19959484 19959484 G T ARVCF Silent p.S902S 0.33 TCGA-XK-AAIW-01 22 19966463 19966463 C T ARVCF Missense_Mutation p.A513T 0.27 tolerated(0.3) benign(0.067) TCGA-XK-AAIW-01 22 19969197 19969197 C A ARVCF Nonsense_Mutation p.G145* 0.34 TCGA-XK-AAIW-01 22 19969540 19969540 C T ARVCF Silent p.T95T 0.45 TCGA-XK-AAIW-01 22 20078990 20078990 C T DGCR8 Missense_Mutation p.R447C 0.40 tolerated(0.14) benign(0.009) TCGA-XK-AAIW-01 22 20079068 20079068 C T DGCR8 Missense_Mutation p.R473W 0.19 deleterious(0) possibly_damaging(0.895) TCGA-XK-AAIW-01 22 20114579 20114579 G A RANBP1 3'UTR 0.52 TCGA-XK-AAIW-01 22 20132768 20132768 A G ZDHHC8 Intron 0.39 TCGA-XK-AAIW-01 22 20759925 20759925 G A ZNF74 Missense_Mutation p.R201H 0.50 tolerated(0.21) benign(0) TCGA-XK-AAIW-01 22 20761115 20761115 G A ZNF74 Missense_Mutation p.V598M 0.24 tolerated_low_confidence(0.38) benign(0.016) TCGA-XK-AAIW-01 22 20800831 20800831 G A KLHL22 Missense_Mutation p.P480S 0.44 tolerated(0.07) probably_damaging(0.997) TCGA-XK-AAIW-01 22 20940935 20940935 G A MED15 Missense_Mutation p.A771T 0.45 tolerated(0.15) benign(0.391) TCGA-XK-AAIW-01 22 21062257 21062257 G A PI4KA 3'UTR 0.52 TCGA-XK-AAIW-01 22 21351670 21351670 G A LZTR1 3'UTR 0.26 TCGA-XK-AAIW-01 22 21354074 21354074 C T THAP7 3'UTR 0.55 TCGA-XK-AAIW-01 22 21363307 21363307 C T AC002472.1 5'Flank 0.19 TCGA-XK-AAIW-01 22 21800813 21800813 G A HIC2 Silent p.T543T 0.45 TCGA-XK-AAIW-01 22 22039094 22039094 C T PPIL2 Silent p.A202A 0.40 TCGA-XK-AAIW-01 22 22556253 22556253 C T IGLV11-55 Silent p.L23L 0.27 TCGA-XK-AAIW-01 22 22599404 22599404 G A VPREB1 Silent p.S31S 0.33 TCGA-XK-AAIW-01 22 22677099 22677099 G A IGLV1-51 Missense_Mutation p.G43R 0.50 tolerated(0.1) probably_damaging(0.984) TCGA-XK-AAIW-01 22 22724400 22724400 C T IGLV7-46 Missense_Mutation p.A99V 0.37 TCGA-XK-AAIW-01 22 22842626 22842626 G A ZNF280B Silent p.H366H 0.34 TCGA-XK-AAIW-01 22 22899260 22899260 C T PRAME 5'UTR 0.35 TCGA-XK-AAIW-01 22 23465564 23465564 C T GNAZ Silent p.D338D 0.44 TCGA-XK-AAIW-01 22 23476327 23476327 C T RTDR1 Missense_Mutation p.A103T 0.35 deleterious(0.02) possibly_damaging(0.453) TCGA-XK-AAIW-01 22 23596133 23596133 C T BCR Missense_Mutation p.A476V 0.41 tolerated(0.14) benign(0.008) TCGA-XK-AAIW-01 22 23915577 23915577 T C IGLL1 Missense_Mutation p.Y173C 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-XK-AAIW-01 22 24086194 24086194 C T ZNF70 Silent p.A378A 0.41 TCGA-XK-AAIW-01 22 24562792 24562792 G A CABIN1 Silent p.R1731R 0.44 TCGA-XK-AAIW-01 22 24580221 24580221 C T SUSD2 Missense_Mutation p.S186L 0.19 tolerated(0.4) benign(0) TCGA-XK-AAIW-01 22 24582104 24582104 C T SUSD2 Missense_Mutation p.A487V 0.40 deleterious(0.03) possibly_damaging(0.61) TCGA-XK-AAIW-01 22 24718719 24718719 G A SPECC1L Missense_Mutation p.A591T 0.38 tolerated(0.1) benign(0.015) TCGA-XK-AAIW-01 22 24726235 24726235 G A SPECC1L Silent p.A744A 0.37 TCGA-XK-AAIW-01 22 24982100 24982100 G A FAM211B Silent p.D234D 0.12 TCGA-XK-AAIW-01 22 25315923 25315923 C T SGSM1 Silent p.N1107N 0.22 TCGA-XK-AAIW-01 22 26173714 26173714 G A MYO18B Silent p.V678V 0.20 TCGA-XK-AAIW-01 22 26291196 26291196 C T MYO18B Silent p.C1539C 0.55 TCGA-XK-AAIW-01 22 26860178 26860178 C T HPS4 Missense_Mutation p.R473H 0.38 tolerated(0.24) benign(0.001) TCGA-XK-AAIW-01 22 26888203 26888203 C T TFIP11 Missense_Mutation p.V764M 0.42 tolerated(0.23) benign(0.001) TCGA-XK-AAIW-01 22 26890809 26890809 C T TFIP11 Missense_Mutation p.S649N 0.30 tolerated(0.35) benign(0.077) TCGA-XK-AAIW-01 22 26951249 26951249 C T TPST2 Intron 0.35 TCGA-XK-AAIW-01 22 28146975 28146975 G A MN1 Silent p.S1297S 0.39 TCGA-XK-AAIW-01 22 28293810 28293810 C T PITPNB Missense_Mutation p.A90T 0.42 deleterious(0) possibly_damaging(0.545) TCGA-XK-AAIW-01 22 29444421 29444421 C T ZNRF3 Silent p.C319C 0.36 TCGA-XK-AAIW-01 22 29454920 29454920 G A C22orf31 Missense_Mutation p.P228L 0.33 deleterious(0.01) possibly_damaging(0.882) TCGA-XK-AAIW-01 22 29611568 29611568 G A EMID1 Missense_Mutation p.A90T 0.33 tolerated(0.23) benign(0.007) TCGA-XK-AAIW-01 22 29693897 29693897 C T EWSR1 Missense_Mutation p.P464S 0.37 tolerated(0.1) unknown(0) TCGA-XK-AAIW-01 22 29708154 29708154 G A GAS2L1 3'Flank 0.44 TCGA-XK-AAIW-01 22 29735056 29735056 C T AP1B1 Missense_Mutation p.G696S 0.48 tolerated(0.64) benign(0.001) TCGA-XK-AAIW-01 22 29737722 29737722 G A AP1B1 Missense_Mutation p.R522C 0.31 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 29837923 29837923 G A RFPL1 Missense_Mutation p.V256I 0.26 tolerated(1) benign(0.042) TCGA-XK-AAIW-01 22 30035131 30035131 C T NF2 Missense_Mutation p.A98V 0.14 tolerated(0.15) probably_damaging(1) TCGA-XK-AAIW-01 22 30125589 30125589 C T CABP7 3'UTR 0.43 TCGA-XK-AAIW-01 22 30218380 30218380 A G ASCC2 Missense_Mutation p.L162P 0.42 deleterious(0) possibly_damaging(0.806) TCGA-XK-AAIW-01 22 30418109 30418109 T C MTMR3 Missense_Mutation p.V1106A 0.51 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 22 30691820 30691820 A G TBC1D10A Missense_Mutation p.S151P 0.42 tolerated(0.27) benign(0.251) TCGA-XK-AAIW-01 22 30824721 30824721 C A MTFP1 3'UTR 0.43 TCGA-XK-AAIW-01 22 30888485 30888485 G A SEC14L4 Missense_Mutation p.R214C 0.47 deleterious(0.04) benign(0.065) TCGA-XK-AAIW-01 22 31033021 31033021 C T SLC35E4 Missense_Mutation p.A195V 0.31 deleterious(0) possibly_damaging(0.574) TCGA-XK-AAIW-01 22 31266435 31266435 C T OSBP2 Silent p.D291D 0.28 TCGA-XK-AAIW-01 22 31289530 31289530 G A OSBP2 Missense_Mutation p.V691M 0.40 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 22 31302310 31302310 G A OSBP2 Missense_Mutation p.C912Y 0.39 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 22 31489822 31489822 G A SMTN Intron 0.20 TCGA-XK-AAIW-01 22 31501210 31501210 C T SELM Missense_Mutation p.R88H 0.27 tolerated(0.53) benign(0.042) TCGA-XK-AAIW-01 22 31520898 31520898 C T INPP5J Intron 0.54 TCGA-XK-AAIW-01 22 31534279 31534279 C T PLA2G3 Silent p.A255A 0.30 TCGA-XK-AAIW-01 22 31658176 31658176 G A LIMK2 Missense_Mutation p.R182H 0.08 deleterious(0.03) benign(0.216) TCGA-XK-AAIW-01 22 31672776 31672777 - C LIMK2 Frame_Shift_Ins p.G574Rfs*12 0.65 TCGA-XK-AAIW-01 22 31731813 31731813 G A PATZ1 Missense_Mutation p.R458C 0.38 deleterious(0.02) benign(0.107) TCGA-XK-AAIW-01 22 32009508 32009508 C T SFI1 Nonsense_Mutation p.Q912* 0.44 TCGA-XK-AAIW-01 22 32239701 32239701 G A DEPDC5 Missense_Mutation p.V893I 0.36 tolerated(0.1) benign(0.043) TCGA-XK-AAIW-01 22 32272191 32272191 C T DEPDC5 Missense_Mutation p.R1240W 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 22 32330033 32330033 C T C22orf24 3'UTR 0.56 TCGA-XK-AAIW-01 22 32546394 32546394 C G C22orf42 Missense_Mutation p.S189T 0.15 tolerated_low_confidence(0.11) benign(0.294) TCGA-XK-AAIW-01 22 32756205 32756205 C T RFPL3S 3'UTR 0.38 TCGA-XK-AAIW-01 22 32783919 32783919 T C RTCB 3'UTR 0.39 TCGA-XK-AAIW-01 22 33402644 33402644 T C SYN3 Missense_Mutation p.N2D 0.41 deleterious(0) unknown(0) TCGA-XK-AAIW-01 22 35660803 35660803 C T HMGXB4 Missense_Mutation p.S141L 0.42 tolerated_low_confidence(0.16) benign(0.015) TCGA-XK-AAIW-01 22 35782786 35782786 C T HMOX1 Missense_Mutation p.R85C 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 22 35782930 35782930 G A HMOX1 Missense_Mutation p.A133T 0.37 tolerated(0.07) possibly_damaging(0.515) TCGA-XK-AAIW-01 22 35948081 35948081 C T RASD2 3'UTR 0.27 TCGA-XK-AAIW-01 22 36142522 36142522 G A RBFOX2 Silent p.D412D 0.43 TCGA-XK-AAIW-01 22 36146495 36146495 C T RBFOX2 Intron 0.14 TCGA-XK-AAIW-01 22 36587468 36587468 G A APOL4 Silent p.D236D 0.27 TCGA-XK-AAIW-01 22 36682850 36682850 C T MYH9 Missense_Mutation p.A1659T 0.33 benign(0.008) TCGA-XK-AAIW-01 22 36684456 36684456 G A MYH9 Missense_Mutation p.R1592W 0.42 probably_damaging(0.927) TCGA-XK-AAIW-01 22 36700195 36700195 C A MYH9 Missense_Mutation p.A746S 0.37 benign(0.031) TCGA-XK-AAIW-01 22 36710262 36710262 G A MYH9 Silent p.R494R 0.46 TCGA-XK-AAIW-01 22 36889728 36889728 G A FOXRED2 Missense_Mutation p.R583C 0.32 deleterious(0) probably_damaging(0.973) TCGA-XK-AAIW-01 22 36900731 36900731 C T FOXRED2 Missense_Mutation p.V204M 0.32 tolerated(0.38) possibly_damaging(0.466) TCGA-XK-AAIW-01 22 36902184 36902184 G A FOXRED2 Missense_Mutation p.R96C 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 22 37098697 37098698 - A CACNG2 5'UTR 0.33 TCGA-XK-AAIW-01 22 37261022 37261022 G A NCF4 Missense_Mutation p.R60H 0.42 deleterious(0.01) probably_damaging(0.982) TCGA-XK-AAIW-01 22 37407119 37407119 G T TST Silent p.R281R 0.38 TCGA-XK-AAIW-01 22 37420591 37420591 G A MPST Missense_Mutation p.R132H 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 22 37462223 37462223 G A TMPRSS6 Missense_Mutation p.A778V 0.48 deleterious(0.01) probably_damaging(0.995) TCGA-XK-AAIW-01 22 37524280 37524280 G A IL2RB Silent p.G504G 0.49 TCGA-XK-AAIW-01 22 37539572 37539572 C T IL2RB Nonsense_Mutation p.W64* 0.38 TCGA-XK-AAIW-01 22 37578308 37578308 G A C1QTNF6 Missense_Mutation p.R253C 0.29 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 37692065 37692065 C A CYTH4 Missense_Mutation p.L65M 0.22 tolerated(0.51) benign(0.05) TCGA-XK-AAIW-01 22 37692101 37692101 G A CYTH4 Missense_Mutation p.A77T 0.22 tolerated(0.1) benign(0.007) TCGA-XK-AAIW-01 22 37771287 37771287 G A ELFN2 Silent p.D96D 0.33 TCGA-XK-AAIW-01 22 37876261 37876261 G A MFNG Silent p.F127F 0.30 TCGA-XK-AAIW-01 22 38084897 38084897 G A NOL12 Silent p.T93T 0.41 TCGA-XK-AAIW-01 22 38119611 38119611 C T TRIOBP Nonsense_Mutation p.Q350* 0.21 TCGA-XK-AAIW-01 22 38119905 38119905 C T TRIOBP Nonsense_Mutation p.R448* 0.35 TCGA-XK-AAIW-01 22 38131003 38131003 C T TRIOBP Nonsense_Mutation p.R1554* 0.20 TCGA-XK-AAIW-01 22 38165309 38165309 G A TRIOBP Missense_Mutation p.R2259H 0.53 deleterious(0.01) probably_damaging(0.996) TCGA-XK-AAIW-01 22 38318135 38318135 G A MICALL1 Silent p.Q242Q 0.35 TCGA-XK-AAIW-01 22 38328608 38328608 G A MICALL1 Missense_Mutation p.D689N 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 22 38352843 38352843 C T POLR2F Silent p.A28A 0.56 TCGA-XK-AAIW-01 22 38522377 38522377 C T PLA2G6 Splice_Site p.X476_splice 0.37 TCGA-XK-AAIW-01 22 38698877 38698877 C T CSNK1E Missense_Mutation p.A109T 0.46 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-XK-AAIW-01 22 38823608 38823608 C T KCNJ4 Missense_Mutation p.R177Q 0.37 tolerated(0.54) possibly_damaging(0.714) TCGA-XK-AAIW-01 22 39084972 39084972 C T JOSD1 Missense_Mutation p.M159I 0.41 tolerated(0.08) benign(0.001) TCGA-XK-AAIW-01 22 39085305 39085305 G A JOSD1 Missense_Mutation p.R104C 0.13 deleterious(0.02) benign(0.092) TCGA-XK-AAIW-01 22 39144768 39144768 G A SUN2 Missense_Mutation p.T233M 0.31 deleterious(0.04) benign(0.029) TCGA-XK-AAIW-01 22 39218726 39218726 C T NPTXR Missense_Mutation p.C464Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 39218732 39218732 G A NPTXR Missense_Mutation p.A462V 0.21 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 39222688 39222688 C T NPTXR Missense_Mutation p.M305I 0.28 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 22 39387383 39387383 G A APOBEC3B Missense_Mutation p.R257H 0.07 deleterious(0.01) benign(0.247) TCGA-XK-AAIW-01 22 39387493 39387493 C T APOBEC3B Missense_Mutation p.R294C 0.31 deleterious(0.01) benign(0) TCGA-XK-AAIW-01 22 39448858 39448858 C A APOBEC3F 3'UTR 0.62 TCGA-XK-AAIW-01 22 39629517 39629517 G A PDGFB Missense_Mutation p.A58V 0.36 tolerated(0.15) benign(0.02) TCGA-XK-AAIW-01 22 39822718 39822718 C T TAB1 Missense_Mutation p.A311V 0.48 tolerated(0.31) probably_damaging(0.998) TCGA-XK-AAIW-01 22 39884916 39884916 C T MGAT3 Missense_Mutation p.P522S 0.62 tolerated_low_confidence(0.31) benign(0) TCGA-XK-AAIW-01 22 39910048 39910048 G A MIEF1 Missense_Mutation p.C371Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 40037071 40037071 G T CACNA1I Missense_Mutation p.G314C 0.34 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 40257913 40257913 C T ENTHD1 Missense_Mutation p.R150H 0.37 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 40365471 40365471 C T GRAP2 Silent p.G249G 0.42 TCGA-XK-AAIW-01 22 40661215 40661215 A G TNRC6B Silent p.T327T 0.45 TCGA-XK-AAIW-01 22 40711437 40711437 C A TNRC6B Missense_Mutation p.P1610Q 0.29 deleterious(0) benign(0.091) TCGA-XK-AAIW-01 22 40757540 40757540 G A ADSL Missense_Mutation p.C304Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 22 40820291 40820291 C T MKL1 Silent p.E132E 0.22 TCGA-XK-AAIW-01 22 40827479 40827479 C A MKL1 Missense_Mutation p.E23D 0.41 deleterious(0) benign(0.138) TCGA-XK-AAIW-01 22 41525896 41525896 G A EP300 Missense_Mutation p.A391T 0.19 unknown(0) TCGA-XK-AAIW-01 22 41536147 41536147 C T EP300 Silent p.V588V 0.35 TCGA-XK-AAIW-01 22 41554480 41554480 C T EP300 Missense_Mutation p.A1189V 0.23 probably_damaging(0.965) TCGA-XK-AAIW-01 22 41626154 41626154 C T L3MBTL2 Missense_Mutation p.R673C 0.16 tolerated_low_confidence(0.17) benign(0) TCGA-XK-AAIW-01 22 41923256 41923256 C A POLR3H 3'UTR 0.43 TCGA-XK-AAIW-01 22 41969707 41969707 G T CSDC2 Missense_Mutation p.Q75H 0.15 tolerated(0.53) possibly_damaging(0.596) TCGA-XK-AAIW-01 22 42032741 42032741 G A XRCC6 Missense_Mutation p.A186T 0.08 deleterious(0) probably_damaging(0.959) TCGA-XK-AAIW-01 22 42071032 42071032 G A NHP2L1 Missense_Mutation p.P98S 0.42 tolerated(0.19) benign(0.157) TCGA-XK-AAIW-01 22 42263147 42263147 G A SREBF2 Missense_Mutation p.R134H 0.39 tolerated(0.18) probably_damaging(0.991) TCGA-XK-AAIW-01 22 42423111 42423111 G A WBP2NL Missense_Mutation p.E286K 0.37 tolerated_low_confidence(1) benign(0.292) TCGA-XK-AAIW-01 22 42606103 42606103 G A TCF20 Missense_Mutation p.P1737S 0.36 benign(0.206) TCGA-XK-AAIW-01 22 42908986 42908986 C T RRP7A Missense_Mutation p.R258H 0.43 deleterious(0.01) possibly_damaging(0.827) TCGA-XK-AAIW-01 22 42970768 42970768 G A SERHL2 3'Flank 0.50 TCGA-XK-AAIW-01 22 43089480 43089480 C T A4GALT Missense_Mutation p.A160T 0.27 tolerated(0.77) benign(0.01) TCGA-XK-AAIW-01 22 43089595 43089595 G A A4GALT Silent p.N121N 0.45 TCGA-XK-AAIW-01 22 43442572 43442572 G A TTLL1 Missense_Mutation p.A329V 0.37 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 22 43599980 43599980 C A SCUBE1 3'UTR 0.23 TCGA-XK-AAIW-01 22 43654236 43654236 C T SCUBE1 Missense_Mutation p.R239H 0.34 tolerated(0.13) benign(0.013) TCGA-XK-AAIW-01 22 43716064 43716064 G A SCUBE1 Silent p.D76D 0.36 TCGA-XK-AAIW-01 22 43821208 43821208 G A MPPED1 Missense_Mutation p.V73M 0.11 tolerated(0.07) probably_damaging(0.981) TCGA-XK-AAIW-01 22 43930616 43930617 - T EFCAB6 Frame_Shift_Ins p.E1396Gfs*52 0.25 TCGA-XK-AAIW-01 22 43930688 43930688 G A EFCAB6 Silent p.Y1371Y 0.34 TCGA-XK-AAIW-01 22 43936214 43936214 C T EFCAB6 Missense_Mutation p.M1224I 0.38 deleterious(0.02) possibly_damaging(0.588) TCGA-XK-AAIW-01 22 44067925 44067925 C T EFCAB6 Missense_Mutation p.R523H 0.48 tolerated(0.18) benign(0.004) TCGA-XK-AAIW-01 22 44373826 44373826 C T SAMM50 Silent p.L308L 0.29 TCGA-XK-AAIW-01 22 44377306 44377306 A G SAMM50 Silent p.V324V 0.09 TCGA-XK-AAIW-01 22 44585032 44585032 G A PARVG Missense_Mutation p.A96T 0.36 tolerated(0.4) possibly_damaging(0.879) TCGA-XK-AAIW-01 22 44681532 44681532 G A KIAA1644 Silent p.Y125Y 0.17 TCGA-XK-AAIW-01 22 44692748 44692748 G A KIAA1644 Missense_Mutation p.R29W 0.38 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 22 44892880 44892880 C T LDOC1L Missense_Mutation p.R186H 0.50 deleterious(0.01) probably_damaging(0.923) TCGA-XK-AAIW-01 22 44892885 44892885 C T LDOC1L Silent p.A184A 0.36 TCGA-XK-AAIW-01 22 45244820 45244820 G A ARHGAP8 Missense_Mutation p.V375M 0.38 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 22 45312240 45312240 C T PHF21B Missense_Mutation p.A162T 0.29 tolerated(0.25) benign(0.006) TCGA-XK-AAIW-01 22 45601700 45601700 C T KIAA0930 Missense_Mutation p.V109I 0.20 deleterious(0) benign(0.343) TCGA-XK-AAIW-01 22 45726576 45726576 G A FAM118A Silent p.S205S 0.29 TCGA-XK-AAIW-01 22 45789573 45789573 G A SMC1B Missense_Mutation p.R496C 0.12 deleterious(0.02) benign(0.168) TCGA-XK-AAIW-01 22 45944611 45944611 C T FBLN1 Silent p.G520G 0.28 TCGA-XK-AAIW-01 22 45958962 45958962 G A FBLN1 Intron 0.39 TCGA-XK-AAIW-01 22 46657945 46657945 G A PKDREJ Silent p.G425G 0.19 TCGA-XK-AAIW-01 22 46658026 46658026 G T PKDREJ Silent p.V398V 0.30 TCGA-XK-AAIW-01 22 46752742 46752742 G A TRMU Missense_Mutation p.A369T 0.33 deleterious(0) probably_damaging(0.933) TCGA-XK-AAIW-01 22 46929866 46929866 G A CELSR1 Missense_Mutation p.R1068W 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-XK-AAIW-01 22 50187716 50187716 G A BRD1 Silent p.D775D 0.43 TCGA-XK-AAIW-01 22 50217104 50217104 G A BRD1 Missense_Mutation p.R288C 0.40 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 22 50279587 50279587 G A ZBED4 Silent p.P759P 0.20 TCGA-XK-AAIW-01 22 50437876 50437876 G A IL17REL Missense_Mutation p.P177L 0.46 deleterious(0) probably_damaging(0.936) TCGA-XK-AAIW-01 22 50547193 50547193 C T MOV10L1 Silent p.D221D 0.31 TCGA-XK-AAIW-01 22 50552164 50552164 G A MOV10L1 Silent p.T277T 0.30 TCGA-XK-AAIW-01 22 50552182 50552182 G T MOV10L1 Missense_Mutation p.K283N 0.28 tolerated(0.11) benign(0.013) TCGA-XK-AAIW-01 22 50584141 50584141 G A MOV10L1 Silent p.P843P 0.38 TCGA-XK-AAIW-01 22 50617461 50617461 G A PANX2 Missense_Mutation p.A597T 0.44 tolerated_low_confidence(0.3) benign(0.002) TCGA-XK-AAIW-01 22 50635672 50635672 C T TRABD Silent p.N141N 0.48 TCGA-XK-AAIW-01 22 50636541 50636541 C T TRABD Silent p.G294G 0.48 TCGA-XK-AAIW-01 22 50649339 50649339 C T SELO Silent p.T450T 0.40 TCGA-XK-AAIW-01 22 50716563 50716563 G A PLXNB2 Missense_Mutation p.R1624W 0.15 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 22 50720614 50720614 G A PLXNB2 Missense_Mutation p.T1039M 0.50 tolerated(0.19) benign(0.032) TCGA-XK-AAIW-01 22 50728217 50728217 C T PLXNB2 Missense_Mutation p.C266Y 0.24 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 22 50752652 50752652 G A DENND6B Silent p.T374T 0.53 TCGA-XK-AAIW-01 22 50832367 50832367 G A PPP6R2 Silent p.T10T 0.30 TCGA-XK-AAIW-01 22 50895021 50895021 G A SBF1 Missense_Mutation p.A1329V 0.62 tolerated(0.46) benign(0) TCGA-XK-AAIW-01 22 50901310 50901310 C T SBF1 Missense_Mutation p.A653T 0.35 tolerated(0.07) benign(0.445) TCGA-XK-AAIW-01 22 50901733 50901733 A G SBF1 Silent p.R626R 0.41 TCGA-XK-AAIW-01 22 50987555 50987555 G A KLHDC7B Silent p.A320A 0.38 TCGA-XK-AAIW-01 2 100181979 100181979 G A AFF3 Missense_Mutation p.T1055M 0.41 deleterious(0.03) benign(0.396) TCGA-XK-AAIW-01 2 100210199 100210199 G A AFF3 Missense_Mutation p.R667C 0.29 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 2 10022928 10022928 T C TAF1B Silent p.G267G 0.42 TCGA-XK-AAIW-01 2 100623347 100623347 C T AFF3 Missense_Mutation p.S232N 0.40 tolerated(0.08) benign(0.109) TCGA-XK-AAIW-01 2 101591981 101591981 G A NPAS2 Silent p.L448L 0.10 TCGA-XK-AAIW-01 2 101644513 101644513 G A TBC1D8 Silent p.N801N 0.45 TCGA-XK-AAIW-01 2 101911428 101911428 G A RNF149 Missense_Mutation p.R226C 0.21 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 2 10199026 10199026 G A CYS1 Missense_Mutation p.S144L 0.47 tolerated(0.05) benign(0.003) TCGA-XK-AAIW-01 2 102505311 102505311 C T MAP4K4 Nonsense_Mutation p.R1184* 0.17 TCGA-XK-AAIW-01 2 102641024 102641024 T G IL1R2 Missense_Mutation p.F261V 0.37 deleterious(0) probably_damaging(0.94) TCGA-XK-AAIW-01 2 10267220 10267220 G A RRM2 Missense_Mutation p.R284H 0.35 deleterious_low_confidence(0.02) possibly_damaging(0.601) TCGA-XK-AAIW-01 2 102792115 102792115 T C IL1R1 Intron 0.19 TCGA-XK-AAIW-01 2 102849474 102849474 G A IL1RL2 Missense_Mutation p.S396N 0.45 tolerated(0.17) benign(0.037) TCGA-XK-AAIW-01 2 103053706 103053706 G A IL18RAP Missense_Mutation p.R205Q 0.26 tolerated(0.35) benign(0.015) TCGA-XK-AAIW-01 2 103061730 103061730 G A IL18RAP Silent p.K334K 0.26 TCGA-XK-AAIW-01 2 105713699 105713699 C T MRPS9 Missense_Mutation p.A339V 0.43 tolerated(0.06) possibly_damaging(0.836) TCGA-XK-AAIW-01 2 10584237 10584237 C T ODC1 Missense_Mutation p.A145T 0.43 tolerated(0.25) benign(0.277) TCGA-XK-AAIW-01 2 105858660 105858660 G T GPR45 Missense_Mutation p.W115C 0.17 deleterious(0.03) probably_damaging(0.95) TCGA-XK-AAIW-01 2 105858688 105858688 C A GPR45 Missense_Mutation p.L125M 0.47 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 2 105858891 105858891 C T GPR45 Silent p.D192D 0.36 TCGA-XK-AAIW-01 2 105924480 105924480 C T TGFBRAP1 Silent p.V93V 0.13 TCGA-XK-AAIW-01 2 105959571 105959571 C T C2orf49 Missense_Mutation p.T178M 0.32 tolerated(0.27) benign(0.003) TCGA-XK-AAIW-01 2 106471637 106471637 C T NCK2 Missense_Mutation p.R40W 0.86 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 2 106497796 106497796 C T NCK2 Missense_Mutation p.T80M 0.33 tolerated(0.11) possibly_damaging(0.891) TCGA-XK-AAIW-01 2 10729320 10729320 G A NOL10 Missense_Mutation p.R565C 0.29 tolerated(0.1) possibly_damaging(0.462) TCGA-XK-AAIW-01 2 108489163 108489163 C T RGPD4 Missense_Mutation p.S1568F 0.34 deleterious(0) probably_damaging(0.979) TCGA-XK-AAIW-01 2 108624992 108624992 G A SLC5A7 Missense_Mutation p.V323I 0.47 tolerated(0.07) possibly_damaging(0.838) TCGA-XK-AAIW-01 2 109292448 109292448 C T LIMS1 Silent p.R265R 0.40 TCGA-XK-AAIW-01 2 109357021 109357021 G A RANBP2 Missense_Mutation p.G287R 0.40 deleterious(0) benign(0) TCGA-XK-AAIW-01 2 109371409 109371409 C T RANBP2 Nonsense_Mutation p.Q751* 0.36 TCGA-XK-AAIW-01 2 109492742 109492742 G A CCDC138 3'UTR 0.38 TCGA-XK-AAIW-01 2 110373357 110373357 G A SOWAHC Missense_Mutation p.A431T 0.43 tolerated(0.49) benign(0.005) TCGA-XK-AAIW-01 2 11052805 11052805 G A KCNF1 Missense_Mutation p.A85T 0.43 tolerated(0.1) probably_damaging(0.915) TCGA-XK-AAIW-01 2 11052975 11052975 C T KCNF1 Silent p.I141I 0.47 TCGA-XK-AAIW-01 2 110936000 110936000 T C NPHP1 Missense_Mutation p.E110G 0.24 tolerated(0.08) benign(0.041) TCGA-XK-AAIW-01 2 111398967 111398967 T C BUB1 Silent p.R900R 0.42 TCGA-XK-AAIW-01 2 111419366 111419366 G A BUB1 Missense_Mutation p.A337V 0.38 tolerated(0.15) benign(0.004) TCGA-XK-AAIW-01 2 112545823 112545823 C A ANAPC1 Missense_Mutation p.S1596I 0.19 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 2 112630929 112630929 G A ANAPC1 Missense_Mutation p.H162Y 0.28 deleterious(0.03) probably_damaging(0.998) TCGA-XK-AAIW-01 2 112740448 112740448 G A MERTK Missense_Mutation p.V392M 0.13 tolerated(0.07) benign(0.077) TCGA-XK-AAIW-01 2 112779082 112779082 G A MERTK Missense_Mutation p.R758H 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 113333173 113333173 G A POLR1B Missense_Mutation p.R1092H 0.22 deleterious(0.04) benign(0.037) TCGA-XK-AAIW-01 2 113343953 113343953 C A CHCHD5 Intron 0.50 TCGA-XK-AAIW-01 2 11376008 11376008 C T ROCK2 Missense_Mutation p.M181I 0.38 deleterious(0.03) possibly_damaging(0.868) TCGA-XK-AAIW-01 2 113763657 113763657 G A IL36A Missense_Mutation p.M39I 0.35 tolerated(0.07) benign(0.001) TCGA-XK-AAIW-01 2 113941078 113941078 G A PSD4 Missense_Mutation p.G349R 0.32 tolerated_low_confidence(0.25) benign(0.007) TCGA-XK-AAIW-01 2 114195456 114195456 C G CBWD2 Missense_Mutation p.A4G 0.39 tolerated_low_confidence(0.08) benign(0.005) TCGA-XK-AAIW-01 2 11721028 11721028 G A GREB1 Intron 0.33 TCGA-XK-AAIW-01 2 11772057 11772057 C T GREB1 Missense_Mutation p.P1545L 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 11802117 11802117 G T NTSR2 Missense_Mutation p.L292I 0.25 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 2 11809657 11809657 C T NTSR2 Missense_Mutation p.R200H 0.31 tolerated(0.17) benign(0.027) TCGA-XK-AAIW-01 2 118582239 118582239 C T DDX18 Silent p.G387G 0.39 TCGA-XK-AAIW-01 2 118701610 118701610 C T CCDC93 Missense_Mutation p.R468H 0.34 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 2 11905843 11905843 G A LPIN1 Missense_Mutation p.R108H 0.54 deleterious(0.04) probably_damaging(0.973) TCGA-XK-AAIW-01 2 11919742 11919742 C T LPIN1 Silent p.L359L 0.27 TCGA-XK-AAIW-01 2 120210887 120210887 G A SCTR Missense_Mutation p.A276V 0.33 tolerated(0.41) benign(0.016) TCGA-XK-AAIW-01 2 120714453 120714453 T G PTPN4 Missense_Mutation p.S672A 0.26 tolerated(0.19) benign(0.013) TCGA-XK-AAIW-01 2 121746949 121746949 C T GLI2 Silent p.T1153T 0.39 TCGA-XK-AAIW-01 2 122215273 122215273 C T CLASP1 Missense_Mutation p.A459T 0.35 deleterious(0.05) probably_damaging(0.969) TCGA-XK-AAIW-01 2 122513333 122513333 C T TSN 5'UTR 0.48 TCGA-XK-AAIW-01 2 125521312 125521312 T C CNTNAP5 Silent p.T765T 0.21 TCGA-XK-AAIW-01 2 125521700 125521700 G A CNTNAP5 Missense_Mutation p.D836N 0.40 deleterious(0.01) benign(0.12) TCGA-XK-AAIW-01 2 125660566 125660566 C T CNTNAP5 Missense_Mutation p.R1181C 0.26 tolerated(0.1) probably_damaging(0.957) TCGA-XK-AAIW-01 2 128065338 128065338 C T MAP3K2 Silent p.P559P 0.44 TCGA-XK-AAIW-01 2 128186326 128186326 C T PROC Missense_Mutation p.A397V 0.45 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 128262295 128262295 G T IWS1 Missense_Mutation p.A395D 0.31 deleterious(0.03) possibly_damaging(0.701) TCGA-XK-AAIW-01 2 128322879 128322879 C T MYO7B Silent p.D68D 0.20 TCGA-XK-AAIW-01 2 128331595 128331595 C T MYO7B Silent p.R231R 0.16 TCGA-XK-AAIW-01 2 128390869 128390869 G T MYO7B Missense_Mutation p.E1788D 0.24 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 2 128412098 128412098 C T LIMS2 Missense_Mutation p.V111I 0.49 deleterious(0.03) possibly_damaging(0.602) TCGA-XK-AAIW-01 2 128631466 128631466 C T AMMECR1L Missense_Mutation p.V115I 0.39 deleterious(0.02) possibly_damaging(0.746) TCGA-XK-AAIW-01 2 128896335 128896335 G T UGGT1 Missense_Mutation p.G543V 0.37 deleterious(0.02) possibly_damaging(0.45) TCGA-XK-AAIW-01 2 128944261 128944261 T C UGGT1 Missense_Mutation p.L1455P 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 129026327 129026327 C T HS6ST1 Silent p.T215T 0.42 TCGA-XK-AAIW-01 2 130725847 130725847 C T RAB6C-AS1 RNA 0.50 TCGA-XK-AAIW-01 2 130877827 130877827 C T POTEF Missense_Mutation p.D88N 0.29 tolerated_low_confidence(0.21) benign(0.073) TCGA-XK-AAIW-01 2 130897505 130897505 C T CCDC74B Silent p.T322T 0.37 TCGA-XK-AAIW-01 2 130930032 130930032 G T SMPD4 Silent p.A222A 0.46 TCGA-XK-AAIW-01 2 131116855 131116855 C T PTPN18 Silent p.S84S 0.39 TCGA-XK-AAIW-01 2 131487316 131487316 G T GPR148 Nonsense_Mutation p.G198* 0.35 TCGA-XK-AAIW-01 2 131520426 131520426 C T AMER3 Missense_Mutation p.P261S 0.18 tolerated(0.05) probably_damaging(1) TCGA-XK-AAIW-01 2 131522167 131522167 G A AMER3 Missense_Mutation p.G841D 0.36 tolerated(0.24) benign(0.011) TCGA-XK-AAIW-01 2 131799001 131799001 G A ARHGEF4 Missense_Mutation p.A435T 0.28 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 131976050 131976050 C T POTEE Silent p.G25G 0.39 TCGA-XK-AAIW-01 2 133174883 133174883 G A GPR39 Missense_Mutation p.E90K 0.43 deleterious(0) benign(0.396) TCGA-XK-AAIW-01 2 133402941 133402941 G A GPR39 Missense_Mutation p.R375H 0.29 deleterious(0.02) probably_damaging(0.925) TCGA-XK-AAIW-01 2 133403069 133403069 G A GPR39 Missense_Mutation p.E418K 0.42 tolerated(1) benign(0) TCGA-XK-AAIW-01 2 133489410 133489410 G T NCKAP5 Silent p.R1781R 0.12 TCGA-XK-AAIW-01 2 135744355 135744355 C T MAP3K19 Missense_Mutation p.R696H 0.35 deleterious(0.04) benign(0.04) TCGA-XK-AAIW-01 2 135893244 135893244 G A RAB3GAP1 Silent p.Q555Q 0.36 TCGA-XK-AAIW-01 2 135908034 135908034 C T RAB3GAP1 Silent p.R673R 0.42 TCGA-XK-AAIW-01 2 135988257 135988257 G A ZRANB3 Missense_Mutation p.P594S 0.38 tolerated(0.21) benign(0.006) TCGA-XK-AAIW-01 2 136418857 136418857 C T R3HDM1 Silent p.C647C 0.26 TCGA-XK-AAIW-01 2 136547323 136547323 G A LCT Missense_Mutation p.A1794V 0.34 tolerated(0.13) benign(0.001) TCGA-XK-AAIW-01 2 136570440 136570440 G A LCT Silent p.G598G 0.53 TCGA-XK-AAIW-01 2 137852464 137852464 C T THSD7B Silent p.F324F 0.36 TCGA-XK-AAIW-01 2 137917826 137917826 G A THSD7B Silent p.P471P 0.49 TCGA-XK-AAIW-01 2 138330060 138330060 C T THSD7B Silent p.S1122S 0.39 TCGA-XK-AAIW-01 2 138400111 138400111 C T THSD7B Missense_Mutation p.P1288S 0.41 deleterious(0.05) unknown(0) TCGA-XK-AAIW-01 2 138759638 138759638 T C HNMT Silent p.L101L 0.43 TCGA-XK-AAIW-01 2 141135848 141135848 C A LRP1B Missense_Mutation p.Q3513H 0.39 possibly_damaging(0.522) TCGA-XK-AAIW-01 2 141459810 141459810 C T LRP1B Missense_Mutation p.D2068N 0.40 possibly_damaging(0.555) TCGA-XK-AAIW-01 2 141665541 141665541 G T LRP1B Missense_Mutation p.P1142H 0.47 probably_damaging(0.977) TCGA-XK-AAIW-01 2 144765062 144765062 G T GTDC1 Missense_Mutation p.L188I 0.42 tolerated_low_confidence(0.47) benign(0.003) TCGA-XK-AAIW-01 2 144903304 144903304 G A GTDC1 Missense_Mutation p.T61I 0.43 tolerated(0.85) benign(0.002) TCGA-XK-AAIW-01 2 145146885 145146885 G A ZEB2 3'UTR 0.75 TCGA-XK-AAIW-01 2 145147501 145147501 G T ZEB2 Silent p.P1054P 0.40 TCGA-XK-AAIW-01 2 145274891 145274891 G A ZEB2 Silent p.G9G 0.33 TCGA-XK-AAIW-01 2 1488475 1488475 C T TPO Silent p.S482S 0.32 TCGA-XK-AAIW-01 2 149247602 149247602 C A MBD5 Silent p.V1234V 0.52 TCGA-XK-AAIW-01 2 1499804 1499804 C T TPO Missense_Mutation p.R684C 0.20 tolerated(0.05) benign(0.013) TCGA-XK-AAIW-01 2 150325226 150325226 C A LYPD6 Silent p.R95R 0.31 TCGA-XK-AAIW-01 2 152132079 152132079 G A NMI Nonsense_Mutation p.R185* 0.50 TCGA-XK-AAIW-01 2 152220548 152220548 C T TNFAIP6 Silent p.G62G 0.31 TCGA-XK-AAIW-01 2 152364588 152364588 C T NEB Silent p.S7794S 0.45 TCGA-XK-AAIW-01 2 152490260 152490260 C T NEB Missense_Mutation p.V3108M 0.39 possibly_damaging(0.674) TCGA-XK-AAIW-01 2 152515628 152515628 T C NEB Missense_Mutation p.D2009G 0.38 probably_damaging(1) TCGA-XK-AAIW-01 2 153003752 153003752 G T STAM2 Missense_Mutation p.P124H 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 153475606 153475606 G A FMNL2 Missense_Mutation p.A521T 0.56 benign(0.074) TCGA-XK-AAIW-01 2 15372584 15372584 T A NBAS Missense_Mutation p.E2066D 0.43 tolerated(0.05) benign(0.008) TCGA-XK-AAIW-01 2 15468417 15468417 G A NBAS Missense_Mutation p.A1456V 0.46 tolerated(0.46) benign(0.002) TCGA-XK-AAIW-01 2 155098657 155098657 C T GALNT13 Silent p.S142S 0.26 TCGA-XK-AAIW-01 2 15693592 15693592 C T NBAS Missense_Mutation p.G98E 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 157186101 157186101 C T NR4A2 Missense_Mutation p.V200I 0.39 tolerated(0.38) benign(0.004) TCGA-XK-AAIW-01 2 157425436 157425436 T G GPD2 Missense_Mutation p.V422G 0.35 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 2 15747405 15747405 G A DDX1 Silent p.Q308Q 0.43 TCGA-XK-AAIW-01 2 15770167 15770167 G A DDX1 Silent p.P675P 0.15 TCGA-XK-AAIW-01 2 158283926 158283926 C T CYTIP Silent p.E161E 0.35 TCGA-XK-AAIW-01 2 158290895 158290895 C T CYTIP Missense_Mutation p.G89E 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 158991382 158991382 C T UPP2 Missense_Mutation p.R369W 0.32 tolerated(0.15) benign(0.005) TCGA-XK-AAIW-01 2 159077216 159077217 - T CCDC148 Frame_Shift_Ins p.Y421Ifs*29 0.35 TCGA-XK-AAIW-01 2 160035216 160035216 C T TANC1 Silent p.A684A 0.19 TCGA-XK-AAIW-01 2 160050801 160050801 G A TANC1 Missense_Mutation p.V926M 0.12 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 2 160182235 160182235 C T BAZ2B Silent p.L2046L 0.23 TCGA-XK-AAIW-01 2 160755563 160755563 G T LY75-CD302 Missense_Mutation p.D34E 0.21 tolerated(0.13) probably_damaging(0.971) TCGA-XK-AAIW-01 2 16085913 16085913 C - MYCN Frame_Shift_Del p.P365Qfs*6 0.32 TCGA-XK-AAIW-01 2 16086001 16086001 C T MYCN Missense_Mutation p.R393C 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 160982962 160982962 C T ITGB6 Missense_Mutation p.C604Y 0.14 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 161056553 161056553 G T ITGB6 Missense_Mutation p.L8M 0.26 deleterious(0.04) possibly_damaging(0.633) TCGA-XK-AAIW-01 2 161137851 161137851 G A RBMS1 Missense_Mutation p.P309S 0.40 tolerated(0.49) benign(0.016) TCGA-XK-AAIW-01 2 162224311 162224311 G A PSMD14 Missense_Mutation p.R46H 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 163044731 163044731 C T FAP Missense_Mutation p.V588M 0.32 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 2 163280016 163280016 C T KCNH7 Missense_Mutation p.V662I 0.36 deleterious(0) probably_damaging(0.971) TCGA-XK-AAIW-01 2 163292018 163292018 G A KCNH7 Silent p.G548G 0.27 TCGA-XK-AAIW-01 2 164467699 164467699 G A FIGN Missense_Mutation p.H215Y 0.45 deleterious(0) benign(0.008) TCGA-XK-AAIW-01 2 165404231 165404231 C A GRB14 Missense_Mutation p.K140N 0.22 deleterious(0) possibly_damaging(0.812) TCGA-XK-AAIW-01 2 165550911 165550911 C A COBLL1 Missense_Mutation p.Q1035H 0.44 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 2 165755097 165755097 G A SLC38A11 Silent p.F357F 0.33 TCGA-XK-AAIW-01 2 165771691 165771691 C T SLC38A11 Missense_Mutation p.V205M 0.23 tolerated(0.26) benign(0.025) TCGA-XK-AAIW-01 2 165947857 165947857 T C SCN3A Splice_Site p.X1603_splice 0.39 TCGA-XK-AAIW-01 2 165984285 165984285 G A SCN3A Silent p.Y1083Y 0.47 TCGA-XK-AAIW-01 2 166020902 166020902 G A SCN3A Missense_Mutation p.A201V 0.16 deleterious(0) benign(0.314) TCGA-XK-AAIW-01 2 166166848 166166848 T C SCN2A Missense_Mutation p.V238A 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 2 166231267 166231267 C T SCN2A Silent p.L1349L 0.49 TCGA-XK-AAIW-01 2 166245293 166245293 G A SCN2A Silent p.A1659A 0.44 TCGA-XK-AAIW-01 2 166611442 166611442 G A GALNT3 Silent p.Y508Y 0.57 TCGA-XK-AAIW-01 2 166611458 166611458 G T GALNT3 Missense_Mutation p.P503H 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 2 166613680 166613680 A G GALNT3 Silent p.H423H 0.46 TCGA-XK-AAIW-01 2 166785667 166785667 T C TTC21B Missense_Mutation p.Y455C 0.46 deleterious(0) probably_damaging(0.971) TCGA-XK-AAIW-01 2 166786784 166786784 C T TTC21B Missense_Mutation p.E329K 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 2 166797631 166797631 C T TTC21B Missense_Mutation p.V206M 0.35 deleterious(0.05) benign(0.216) TCGA-XK-AAIW-01 2 166848823 166848823 C A SCN1A Missense_Mutation p.K1654N 0.38 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 1670057 1670057 C A PXDN Missense_Mutation p.S407I 0.17 tolerated(0.17) possibly_damaging(0.477) TCGA-XK-AAIW-01 2 167129367 167129367 C T SCN9A Missense_Mutation p.A954T 0.39 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 2 167151238 167151238 G A SCN9A Intron 0.60 TCGA-XK-AAIW-01 2 167262766 167262766 G T SCN7A Missense_Mutation p.P1458H 0.36 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 2 16769392 16769392 G A FAM49A 5'UTR 0.18 TCGA-XK-AAIW-01 2 168074807 168074807 G A XIRP2 Silent p.E285E 0.11 TCGA-XK-AAIW-01 2 168099595 168099595 G A XIRP2 Missense_Mutation p.E565K 0.42 probably_damaging(0.923) TCGA-XK-AAIW-01 2 168103287 168103287 G A XIRP2 Silent p.R1795R 0.37 TCGA-XK-AAIW-01 2 168106837 168106837 C T XIRP2 Silent p.L2979L 0.45 TCGA-XK-AAIW-01 2 168110575 168110575 C T XIRP2 Missense_Mutation p.T3530I 0.49 possibly_damaging(0.894) TCGA-XK-AAIW-01 2 169404103 169404103 T C CERS6 Intron 0.33 TCGA-XK-AAIW-01 2 169791908 169791908 G A ABCB11 Missense_Mutation p.R948C 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 2 170025112 170025112 A G LRP2 Missense_Mutation p.Y3858H 0.65 benign(0.008) TCGA-XK-AAIW-01 2 170062058 170062058 C T LRP2 Missense_Mutation p.S2549N 0.54 benign(0.097) TCGA-XK-AAIW-01 2 170417105 170417105 C T FASTKD1 Missense_Mutation p.V255I 0.43 tolerated(0.73) benign(0.01) TCGA-XK-AAIW-01 2 170428528 170428528 T C FASTKD1 Silent p.T4T 0.49 TCGA-XK-AAIW-01 2 170493989 170493989 G A PPIG Missense_Mutation p.D741N 0.14 tolerated_low_confidence(0.26) unknown(0) TCGA-XK-AAIW-01 2 170502639 170502639 G A CCDC173 Silent p.C457C 0.33 TCGA-XK-AAIW-01 2 170592130 170592130 G A KLHL23 Silent p.E202E 0.45 TCGA-XK-AAIW-01 2 170929970 170929970 C T UBR3 Silent p.C1684C 0.29 TCGA-XK-AAIW-01 2 171863309 171863309 C T TLK1 Splice_Site p.X533_splice 0.10 TCGA-XK-AAIW-01 2 172671677 172671677 C A SLC25A12 Missense_Mutation p.Q322H 0.38 tolerated(0.05) benign(0.013) TCGA-XK-AAIW-01 2 172822331 172822331 T C HAT1 Silent p.F171F 0.10 TCGA-XK-AAIW-01 2 173852994 173852994 C T RAPGEF4 Silent p.Y407Y 0.27 TCGA-XK-AAIW-01 2 174945974 174945974 G T OLA1 Missense_Mutation p.A291D 0.41 deleterious(0.03) possibly_damaging(0.482) TCGA-XK-AAIW-01 2 175094087 175094087 G T OLA1 Missense_Mutation p.P65H 0.34 tolerated(0.09) benign(0.274) TCGA-XK-AAIW-01 2 175265862 175265862 T C SCRN3 Silent p.N162N 0.35 TCGA-XK-AAIW-01 2 175939443 175939443 G A ATF2 Missense_Mutation p.A471V 0.36 tolerated(0.05) probably_damaging(0.991) TCGA-XK-AAIW-01 2 177036436 177036436 C T HOXD3 Missense_Mutation p.R245W 0.28 deleterious(0) benign(0.006) TCGA-XK-AAIW-01 2 177036685 177036685 C T HOXD3 Missense_Mutation p.R328C 0.60 deleterious(0) possibly_damaging(0.876) TCGA-XK-AAIW-01 2 177036997 177036997 C A HOXD3 Missense_Mutation p.L432M 0.27 deleterious(0) possibly_damaging(0.86) TCGA-XK-AAIW-01 2 178096565 178096565 T C NFE2L2 Missense_Mutation p.S256G 0.39 tolerated(0.07) benign(0.007) TCGA-XK-AAIW-01 2 178357886 178357886 C T AGPS Missense_Mutation p.P415L 0.38 deleterious(0.02) possibly_damaging(0.665) TCGA-XK-AAIW-01 2 178415725 178415725 G T TTC30B Nonsense_Mutation p.C589* 0.16 TCGA-XK-AAIW-01 2 178416380 178416380 G A TTC30B Missense_Mutation p.A371V 0.43 deleterious(0) possibly_damaging(0.489) TCGA-XK-AAIW-01 2 17902486 17902486 G A SMC6 Missense_Mutation p.R257C 0.14 tolerated(0.12) benign(0.189) TCGA-XK-AAIW-01 2 179251853 179251853 G A OSBPL6 Missense_Mutation p.V740I 0.38 deleterious(0.01) benign(0.168) TCGA-XK-AAIW-01 2 179400468 179400468 G T TTN Missense_Mutation p.P33625H 0.38 TCGA-XK-AAIW-01 2 179401677 179401677 T C TTN Missense_Mutation p.K33387E 0.47 TCGA-XK-AAIW-01 2 179407817 179407817 C T TTN Missense_Mutation p.V32295M 0.44 TCGA-XK-AAIW-01 2 179408999 179408999 G A TTN Missense_Mutation p.A31986V 0.42 TCGA-XK-AAIW-01 2 179413764 179413764 G A TTN Silent p.A30863A 0.45 TCGA-XK-AAIW-01 2 179422223 179422223 C T TTN Missense_Mutation p.V29256M 0.47 TCGA-XK-AAIW-01 2 179424206 179424206 G A TTN Missense_Mutation p.R28885C 0.39 TCGA-XK-AAIW-01 2 179435501 179435501 T C TTN Missense_Mutation p.T25120A 0.36 TCGA-XK-AAIW-01 2 179438251 179438251 T C TTN Missense_Mutation p.Y24203C 0.43 TCGA-XK-AAIW-01 2 179444834 179444834 G A TTN Missense_Mutation p.R22394C 0.31 TCGA-XK-AAIW-01 2 179446516 179446516 G A TTN Missense_Mutation p.P22160L 0.27 TCGA-XK-AAIW-01 2 179447397 179447397 A G TTN Intron 0.63 TCGA-XK-AAIW-01 2 179449464 179449464 C T TTN Missense_Mutation p.R21635H 0.44 TCGA-XK-AAIW-01 2 179452941 179452941 G A TTN Missense_Mutation p.P21065S 0.27 TCGA-XK-AAIW-01 2 179478930 179478930 C T TTN Nonsense_Mutation p.W16398* 0.18 TCGA-XK-AAIW-01 2 179486290 179486290 C T TTN Silent p.L15087L 0.25 TCGA-XK-AAIW-01 2 179486415 179486415 C A TTN Missense_Mutation p.D15046Y 0.32 TCGA-XK-AAIW-01 2 179534361 179534361 G A TTN Missense_Mutation p.R11810C 0.33 TCGA-XK-AAIW-01 2 179542933 179542933 G A TTN Missense_Mutation p.P11305S 0.34 TCGA-XK-AAIW-01 2 179549439 179549440 - T TTN Frame_Shift_Ins p.V10865Gfs*7 0.46 TCGA-XK-AAIW-01 2 179577222 179577222 C T TTN Missense_Mutation p.V9143I 0.42 TCGA-XK-AAIW-01 2 179579944 179579944 C A TTN Nonsense_Mutation p.G8657* 0.36 TCGA-XK-AAIW-01 2 179591839 179591839 G A TTN Silent p.C6751C 0.38 TCGA-XK-AAIW-01 2 179593390 179593390 G A TTN Silent p.D6421D 0.46 TCGA-XK-AAIW-01 2 179594052 179594052 G A TTN Silent p.G6277G 0.33 TCGA-XK-AAIW-01 2 179598396 179598396 G A TTN Silent p.C5240C 0.45 TCGA-XK-AAIW-01 2 179613263 179613263 A G TTN Intron 0.36 TCGA-XK-AAIW-01 2 179623769 179623769 C T TTN Silent p.T3415T 0.44 TCGA-XK-AAIW-01 2 179633626 179633626 G A TTN Silent p.N2979N 0.35 TCGA-XK-AAIW-01 2 179639725 179639725 G A TTN Missense_Mutation p.T2238M 0.22 TCGA-XK-AAIW-01 2 179640133 179640133 G A TTN Missense_Mutation p.A2153V 0.17 TCGA-XK-AAIW-01 2 179641415 179641415 G A TTN Silent p.L1726L 0.13 TCGA-XK-AAIW-01 2 179641420 179641420 C T TTN Missense_Mutation p.C1724Y 0.42 TCGA-XK-AAIW-01 2 182347362 182347362 A G ITGA4 Missense_Mutation p.Y342C 0.16 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 2 182542533 182542533 G A NEUROD1 Missense_Mutation p.A352V 0.36 deleterious(0.01) possibly_damaging(0.78) TCGA-XK-AAIW-01 2 182542961 182542961 C T NEUROD1 Silent p.T209T 0.32 TCGA-XK-AAIW-01 2 182766536 182766536 G A SSFA2 Silent p.A252A 0.36 TCGA-XK-AAIW-01 2 183011765 183011765 C T PDE1A Intron 0.43 TCGA-XK-AAIW-01 2 183641895 183641895 T C DNAJC10 3'UTR 0.29 TCGA-XK-AAIW-01 2 183821199 183821199 C T NCKAP1 Missense_Mutation p.R721H 0.31 deleterious(0.01) probably_damaging(0.975) TCGA-XK-AAIW-01 2 183951789 183951789 G A DUSP19 Missense_Mutation p.A99T 0.48 deleterious(0) possibly_damaging(0.876) TCGA-XK-AAIW-01 2 185803052 185803052 G A ZNF804A Missense_Mutation p.E977K 0.38 deleterious(0.01) probably_damaging(0.956) TCGA-XK-AAIW-01 2 185803109 185803109 T C ZNF804A Missense_Mutation p.S996P 0.43 tolerated(0.57) probably_damaging(0.969) TCGA-XK-AAIW-01 2 18757550 18757550 G A NT5C1B Missense_Mutation p.A470V 0.09 deleterious(0) probably_damaging(0.971) TCGA-XK-AAIW-01 2 18765459 18765459 G A NT5C1B Silent p.D322D 0.40 TCGA-XK-AAIW-01 2 189448999 189448999 G A GULP1 Missense_Mutation p.S206N 0.36 tolerated(0.34) benign(0.001) TCGA-XK-AAIW-01 2 189906341 189906341 G A COL5A2 Nonsense_Mutation p.R1202* 0.16 TCGA-XK-AAIW-01 2 189940164 189940164 C A COL5A2 Splice_Site p.X354_splice 0.20 TCGA-XK-AAIW-01 2 190428718 190428718 C T SLC40A1 Missense_Mutation p.A332T 0.36 deleterious(0.04) possibly_damaging(0.603) TCGA-XK-AAIW-01 2 190428735 190428735 C T SLC40A1 Missense_Mutation p.C326Y 0.19 deleterious(0.04) benign(0.038) TCGA-XK-AAIW-01 2 190445173 190445173 C T SLC40A1 Missense_Mutation p.G5E 0.32 tolerated_low_confidence(0.46) benign(0.001) TCGA-XK-AAIW-01 2 190531702 190531702 G A ASNSD1 Missense_Mutation p.V282I 0.38 tolerated(0.36) benign(0.001) TCGA-XK-AAIW-01 2 190532519 190532519 G A ASNSD1 Silent p.E498E 0.38 TCGA-XK-AAIW-01 2 190561072 190561072 G T ANKAR Missense_Mutation p.R562M 0.34 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 2 190569831 190569831 G A ANKAR Silent p.T597T 0.33 TCGA-XK-AAIW-01 2 190603353 190603353 T C ANKAR Silent p.V1215V 0.09 TCGA-XK-AAIW-01 2 190606144 190606144 G A ANKAR Silent p.R1259R 0.28 TCGA-XK-AAIW-01 2 190611229 190611229 A C ANKAR Missense_Mutation p.N1394T 0.43 tolerated_low_confidence(0.11) benign(0.11) TCGA-XK-AAIW-01 2 190728676 190728678 AAG - PMS1 In_Frame_Del p.R690del 0.35 TCGA-XK-AAIW-01 2 190922151 190922152 - T MSTN Frame_Shift_Ins p.Y321Ifs*29 0.30 TCGA-XK-AAIW-01 2 191161561 191161561 C T HIBCH Missense_Mutation p.R66Q 0.10 tolerated(0.24) benign(0.007) TCGA-XK-AAIW-01 2 191302025 191302025 C T MFSD6 Missense_Mutation p.P424S 0.47 tolerated(0.18) benign(0.006) TCGA-XK-AAIW-01 2 191302098 191302098 G A MFSD6 Missense_Mutation p.G448D 0.35 deleterious(0.01) possibly_damaging(0.851) TCGA-XK-AAIW-01 2 192011454 192011454 G A STAT4 Missense_Mutation p.A53V 0.50 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 2 192225388 192225388 G A MYO1B Silent p.Q198Q 0.35 TCGA-XK-AAIW-01 2 192261212 192261212 C T MYO1B Missense_Mutation p.R762W 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 192267355 192267355 T C MYO1B Intron 0.23 TCGA-XK-AAIW-01 2 192711277 192711277 C T SDPR Silent p.T125T 0.44 TCGA-XK-AAIW-01 2 192711441 192711441 C T SDPR Missense_Mutation p.A71T 0.45 tolerated(0.84) benign(0.012) TCGA-XK-AAIW-01 2 196636445 196636445 C A DNAH7 Missense_Mutation p.R3791L 0.24 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 196729521 196729521 G A DNAH7 Silent p.I2286I 0.41 TCGA-XK-AAIW-01 2 196765102 196765102 C T DNAH7 Silent p.T1484T 0.37 TCGA-XK-AAIW-01 2 196799426 196799426 G A DNAH7 Silent p.S1120S 0.38 TCGA-XK-AAIW-01 2 197004383 197004383 G A STK17B Missense_Mutation p.A266V 0.28 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 197540891 197540891 A G CCDC150 Missense_Mutation p.T388A 0.34 tolerated(0.07) benign(0.01) TCGA-XK-AAIW-01 2 197870470 197870470 A G ANKRD44 Silent p.C740C 0.41 TCGA-XK-AAIW-01 2 197878290 197878290 G A HNRNPA3P15 5'Flank 0.46 TCGA-XK-AAIW-01 2 197990131 197990131 C T ANKRD44 Missense_Mutation p.R175H 0.46 deleterious(0.03) possibly_damaging(0.542) TCGA-XK-AAIW-01 2 198353833 198353833 G A HSPD1 Missense_Mutation p.R370C 0.45 tolerated(0.07) benign(0.025) TCGA-XK-AAIW-01 2 198511274 198511274 C T RFTN2 Missense_Mutation p.V86M 0.34 deleterious(0.04) benign(0.087) TCGA-XK-AAIW-01 2 198640396 198640396 C T BOLL Silent p.G127G 0.24 TCGA-XK-AAIW-01 2 198950184 198950184 G A PLCL1 Missense_Mutation p.R648K 0.49 deleterious(0.03) probably_damaging(0.951) TCGA-XK-AAIW-01 2 200828502 200828502 G A C2orf47 Missense_Mutation p.A282T 0.35 tolerated(1) benign(0.091) TCGA-XK-AAIW-01 2 201305436 201305436 C T SPATS2L Silent p.R239R 0.39 TCGA-XK-AAIW-01 2 20135319 20135319 G A WDR35 Silent p.R831R 0.41 TCGA-XK-AAIW-01 2 201354980 201354980 C T KCTD18 Missense_Mutation p.R375Q 0.42 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-XK-AAIW-01 2 201369584 201369584 C T KCTD18 Missense_Mutation p.A87T 0.47 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 2 201683504 201683505 - A BZW1 Frame_Shift_Ins p.N317Kfs*54 0.34 TCGA-XK-AAIW-01 2 202025497 202025497 C T CFLAR Missense_Mutation p.A379V 0.45 tolerated(0.23) benign(0.117) TCGA-XK-AAIW-01 2 202074091 202074091 G T CASP10 Missense_Mutation p.Q407H 0.38 tolerated(0.06) possibly_damaging(0.447) TCGA-XK-AAIW-01 2 202141679 202141679 C T CASP8 Missense_Mutation p.H323Y 0.36 tolerated(1) benign(0.439) TCGA-XK-AAIW-01 2 202259538 202259538 G A TRAK2 Missense_Mutation p.R320W 0.10 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 2 202488929 202488929 A - TMEM237 3'UTR 0.27 TCGA-XK-AAIW-01 2 202574743 202574743 G A ALS2 Missense_Mutation p.H1381Y 0.26 deleterious(0) possibly_damaging(0.898) TCGA-XK-AAIW-01 2 202625667 202625667 C T ALS2 Silent p.R350R 0.35 TCGA-XK-AAIW-01 2 202626434 202626434 T C ALS2 Missense_Mutation p.T95A 0.37 tolerated(0.62) benign(0.001) TCGA-XK-AAIW-01 2 202900064 202900064 G A FZD7 Missense_Mutation p.A232T 0.41 tolerated(0.07) benign(0.217) TCGA-XK-AAIW-01 2 202900778 202900778 C T FZD7 Missense_Mutation p.R470C 0.53 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 203624073 203624073 G A FAM117B Missense_Mutation p.C483Y 0.30 tolerated(0.45) possibly_damaging(0.454) TCGA-XK-AAIW-01 2 203760881 203760881 C T WDR12 Nonsense_Mutation p.W172* 0.44 TCGA-XK-AAIW-01 2 203839141 203839141 A - CARF Frame_Shift_Del p.N474Ifs*10 0.20 TCGA-XK-AAIW-01 2 204001353 204001353 C G NBEAL1 Missense_Mutation p.T1445R 0.40 deleterious(0) possibly_damaging(0.836) TCGA-XK-AAIW-01 2 204009786 204009786 A G NBEAL1 Missense_Mutation p.E1707G 0.53 deleterious(0.02) benign(0.003) TCGA-XK-AAIW-01 2 204304354 204304354 G A RAPH1 Missense_Mutation p.R1187C 0.44 unknown(0) TCGA-XK-AAIW-01 2 204305754 204305754 G A RAPH1 Missense_Mutation p.T720I 0.32 possibly_damaging(0.72) TCGA-XK-AAIW-01 2 204591557 204591557 A G CD28 Missense_Mutation p.N85S 0.40 tolerated(0.07) benign(0.035) TCGA-XK-AAIW-01 2 204591691 204591691 G T CD28 Nonsense_Mutation p.G130* 0.39 TCGA-XK-AAIW-01 2 205990365 205990365 G T PARD3B Missense_Mutation p.Q446H 0.38 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 2 206305231 206305231 G A PARD3B Missense_Mutation p.R898Q 0.21 tolerated(0.06) possibly_damaging(0.542) TCGA-XK-AAIW-01 2 206590772 206590772 C T NRP2 Missense_Mutation p.T319I 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 2 207173107 207173107 A G ZDBF2 Missense_Mutation p.I1285M 0.08 tolerated(0.08) benign(0.308) TCGA-XK-AAIW-01 2 207175942 207175942 C T ZDBF2 Silent p.Y2230Y 0.56 TCGA-XK-AAIW-01 2 207508964 207508964 G A AC010731.4 RNA 0.35 TCGA-XK-AAIW-01 2 207527852 207527852 G A DYTN Nonsense_Mutation p.Q470* 0.47 TCGA-XK-AAIW-01 2 207631944 207631944 C T FASTKD2 Missense_Mutation p.A176V 0.34 tolerated(0.12) possibly_damaging(0.787) TCGA-XK-AAIW-01 2 208442363 208442363 C T CREB1 Missense_Mutation p.R289C 0.18 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 208478148 208478148 C T METTL21A Silent p.T93T 0.31 TCGA-XK-AAIW-01 2 208631738 208631738 A G FZD5 Missense_Mutation p.Y576H 0.13 tolerated_low_confidence(0.3) benign(0) TCGA-XK-AAIW-01 2 208631911 208631911 C T FZD5 Missense_Mutation p.G518D 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 208986380 208986380 A G CRYGD 3'UTR 0.37 TCGA-XK-AAIW-01 2 208986563 208986563 T C CRYGD Missense_Mutation p.E120G 0.33 deleterious(0) probably_damaging(0.923) TCGA-XK-AAIW-01 2 209010717 209010717 G T CRYGB Silent p.A11A 0.47 TCGA-XK-AAIW-01 2 209104660 209104660 C A IDH1 Missense_Mutation p.E306D 0.42 deleterious_low_confidence(0) probably_damaging(1) TCGA-XK-AAIW-01 2 209167059 209167059 G A PIKFYVE Silent p.A434A 0.10 TCGA-XK-AAIW-01 2 209217388 209217388 C T PIKFYVE Missense_Mutation p.A1909V 0.34 tolerated(0.8) benign(0.211) TCGA-XK-AAIW-01 2 210560392 210560392 C T MAP2 Silent p.A1166A 0.39 TCGA-XK-AAIW-01 2 210642204 210642204 G A UNC80 Missense_Mutation p.R174Q 0.35 possibly_damaging(0.655) TCGA-XK-AAIW-01 2 210896182 210896182 C A KANSL1L Missense_Mutation p.Q706H 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-XK-AAIW-01 2 211179889 211179889 C A MYL1 5'UTR 0.34 TCGA-XK-AAIW-01 2 211319934 211319934 G A LANCL1 Missense_Mutation p.R102C 0.40 deleterious(0) possibly_damaging(0.74) TCGA-XK-AAIW-01 2 21226053 21226053 G T APOB Missense_Mutation p.L4081I 0.47 benign(0.007) TCGA-XK-AAIW-01 2 21231977 21231977 G T APOB Missense_Mutation p.P2588H 0.44 probably_damaging(0.998) TCGA-XK-AAIW-01 2 213921699 213921699 G A IKZF2 Silent p.S88S 0.43 TCGA-XK-AAIW-01 2 215013934 215013934 T G SPAG16 Missense_Mutation p.I555S 0.36 deleterious(0.01) benign(0.04) TCGA-XK-AAIW-01 2 215275056 215275056 C T SPAG16 3'UTR 0.33 TCGA-XK-AAIW-01 2 215645655 215645655 G A BARD1 Missense_Mutation p.P315S 0.29 tolerated(0.58) benign(0.014) TCGA-XK-AAIW-01 2 216211645 216211645 T C ATIC Missense_Mutation p.V495A 0.40 deleterious(0) probably_damaging(0.923) TCGA-XK-AAIW-01 2 216214268 216214268 G A ATIC Missense_Mutation p.A557T 0.12 tolerated(0.13) benign(0.003) TCGA-XK-AAIW-01 2 216923661 216923661 C T PECR Missense_Mutation p.V155I 0.29 deleterious(0.01) probably_damaging(0.931) TCGA-XK-AAIW-01 2 216965056 216965056 G A TMEM169 Missense_Mutation p.A229T 0.41 tolerated(0.21) benign(0.061) TCGA-XK-AAIW-01 2 217124369 217124369 C T MARCH4 Missense_Mutation p.R300H 0.47 deleterious(0) benign(0.043) TCGA-XK-AAIW-01 2 217234544 217234544 C T MARCH4 Missense_Mutation p.R147H 0.39 tolerated(0.14) benign(0.093) TCGA-XK-AAIW-01 2 218940239 218940239 G A RUFY4 Missense_Mutation p.V362I 0.50 tolerated(0.24) benign(0.003) TCGA-XK-AAIW-01 2 218953985 218953985 C T RUFY4 Missense_Mutation p.R525C 0.36 tolerated(0.07) possibly_damaging(0.563) TCGA-XK-AAIW-01 2 218999889 218999889 T G CXCR2 Missense_Mutation p.V122G 0.34 deleterious(0) benign(0.272) TCGA-XK-AAIW-01 2 219000152 219000152 C A CXCR2 Missense_Mutation p.L210M 0.49 tolerated(0.08) benign(0.31) TCGA-XK-AAIW-01 2 219127556 219127556 C T GPBAR1 Silent p.L37L 0.32 TCGA-XK-AAIW-01 2 219292746 219292746 G A VIL1 Missense_Mutation p.V136I 0.36 tolerated(0.73) benign(0.002) TCGA-XK-AAIW-01 2 219503083 219503083 G A ZNF142 Silent p.P1681P 0.37 TCGA-XK-AAIW-01 2 219508081 219508081 C T ZNF142 Missense_Mutation p.R1053H 0.19 tolerated(0.09) possibly_damaging(0.522) TCGA-XK-AAIW-01 2 219526232 219526232 A G BCS1L Missense_Mutation p.T142A 0.51 tolerated(0.15) benign(0.216) TCGA-XK-AAIW-01 2 219609893 219609893 C A TTLL4 Missense_Mutation p.L575I 0.38 deleterious(0) possibly_damaging(0.899) TCGA-XK-AAIW-01 2 219618908 219618908 G A TTLL4 Silent p.T1132T 0.35 TCGA-XK-AAIW-01 2 219736503 219736503 G A WNT6 Missense_Mutation p.A200T 0.37 tolerated(1) benign(0.008) TCGA-XK-AAIW-01 2 219738492 219738492 G A WNT6 Silent p.L341L 0.69 TCGA-XK-AAIW-01 2 219746967 219746967 C T WNT10A Silent p.G66G 0.40 TCGA-XK-AAIW-01 2 219892686 219892687 - G CCDC108 Frame_Shift_Ins p.M633Hfs*35 0.39 TCGA-XK-AAIW-01 2 219925158 219925158 T C IHH Missense_Mutation p.H11R 0.50 tolerated(0.35) benign(0) TCGA-XK-AAIW-01 2 220089410 220089410 A G ATG9A Missense_Mutation p.L228P 0.42 deleterious(0) probably_damaging(0.974) TCGA-XK-AAIW-01 2 220091656 220091656 G A ATG9A Splice_Site p.X50_splice 0.27 TCGA-XK-AAIW-01 2 220112402 220112402 T C STK16 Missense_Mutation p.C194R 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 220114967 220114967 G A TUBA4A 3'UTR 0.37 TCGA-XK-AAIW-01 2 220150644 220150644 G A DNAJB2 3'UTR 0.27 TCGA-XK-AAIW-01 2 220150767 220150767 G A DNAJB2 3'UTR 0.34 TCGA-XK-AAIW-01 2 220161053 220161053 G A PTPRN Silent p.S801S 0.44 TCGA-XK-AAIW-01 2 220164504 220164504 G T PTPRN Missense_Mutation p.L481M 0.40 deleterious(0.01) probably_damaging(0.951) TCGA-XK-AAIW-01 2 220500496 220500496 C T SLC4A3 Missense_Mutation p.R719W 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 220505562 220505562 G A SLC4A3 Missense_Mutation p.A1194T 0.35 deleterious(0.04) benign(0.011) TCGA-XK-AAIW-01 2 222290747 222290747 C T EPHA4 3'UTR 0.30 TCGA-XK-AAIW-01 2 222291329 222291329 C T EPHA4 Missense_Mutation p.A901T 0.41 tolerated(0.22) benign(0.001) TCGA-XK-AAIW-01 2 222294822 222294822 C T EPHA4 Missense_Mutation p.C849Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 222307708 222307708 G A EPHA4 Missense_Mutation p.R639C 0.08 tolerated(0.14) probably_damaging(0.988) TCGA-XK-AAIW-01 2 223159003 223159003 T C PAX3 Missense_Mutation p.I157V 0.13 tolerated(0.91) benign(0.017) TCGA-XK-AAIW-01 2 223168793 223168793 C T CCDC140 Missense_Mutation p.R58C 0.47 deleterious_low_confidence(0.04) possibly_damaging(0.835) TCGA-XK-AAIW-01 2 224746674 224746674 G A WDFY1 Missense_Mutation p.S350F 0.18 deleterious(0.02) possibly_damaging(0.579) TCGA-XK-AAIW-01 2 224828620 224828620 G T MRPL44 Missense_Mutation p.A266S 0.35 deleterious(0) benign(0.239) TCGA-XK-AAIW-01 2 224866369 224866369 G A SERPINE2 Silent p.Y95Y 0.38 TCGA-XK-AAIW-01 2 225266032 225266032 C T FAM124B Missense_Mutation p.A152T 0.26 tolerated(0.08) probably_damaging(0.999) TCGA-XK-AAIW-01 2 225796266 225796266 T C DOCK10 Silent p.S81S 0.43 TCGA-XK-AAIW-01 2 225796306 225796306 G T DOCK10 Missense_Mutation p.P68H 0.20 deleterious(0.02) possibly_damaging(0.828) TCGA-XK-AAIW-01 2 226446657 226446657 C T NYAP2 Missense_Mutation p.A175V 0.37 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 2 227662817 227662817 C T IRS1 Missense_Mutation p.R213H 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 228134636 228134636 C T COL4A3 Silent p.G505G 0.40 TCGA-XK-AAIW-01 2 228135612 228135612 G A COL4A3 Missense_Mutation p.D568N 0.42 probably_damaging(0.972) TCGA-XK-AAIW-01 2 228195470 228195470 C T MFF Missense_Mutation p.A56V 0.40 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 2 228205038 228205038 C T MFF Missense_Mutation p.R154W 0.40 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 2 228399714 228399714 C T AGFG1 Missense_Mutation p.A417V 0.41 tolerated(0.66) benign(0.002) TCGA-XK-AAIW-01 2 228563579 228563579 C T SLC19A3 Nonsense_Mutation p.W284* 0.38 TCGA-XK-AAIW-01 2 228883382 228883382 G T SPHKAP Missense_Mutation p.L730I 0.44 tolerated(0.18) benign(0.133) TCGA-XK-AAIW-01 2 229890602 229890602 C T PID1 Missense_Mutation p.A165T 0.19 tolerated(0.66) probably_damaging(0.998) TCGA-XK-AAIW-01 2 229890683 229890683 G A PID1 Missense_Mutation p.P138S 0.08 deleterious(0.05) probably_damaging(0.998) TCGA-XK-AAIW-01 2 229890687 229890687 G A PID1 Silent p.I136I 0.37 TCGA-XK-AAIW-01 2 230020593 230020593 C T PID1 Missense_Mutation p.A71T 0.19 deleterious(0.04) benign(0.366) TCGA-XK-AAIW-01 2 230456385 230456385 G T DNER Missense_Mutation p.L166M 0.34 deleterious(0.02) possibly_damaging(0.577) TCGA-XK-AAIW-01 2 230705619 230705619 C T TRIP12 Missense_Mutation p.R309H 0.43 deleterious(0) possibly_damaging(0.572) TCGA-XK-AAIW-01 2 230861622 230861622 T G FBXO36 Missense_Mutation p.S121A 0.13 deleterious(0.01) probably_damaging(0.914) TCGA-XK-AAIW-01 2 230910581 230910581 A G SLC16A14 Missense_Mutation p.Y421H 0.42 tolerated(0.12) probably_damaging(1) TCGA-XK-AAIW-01 2 230911012 230911012 A G SLC16A14 Missense_Mutation p.M277T 0.23 tolerated(0.64) benign(0.004) TCGA-XK-AAIW-01 2 231050721 231050721 G A SP110 Missense_Mutation p.S423F 0.39 deleterious(0.04) possibly_damaging(0.683) TCGA-XK-AAIW-01 2 231076266 231076266 C T SP110 Missense_Mutation p.A224T 0.38 tolerated(0.5) benign(0.001) TCGA-XK-AAIW-01 2 231264929 231264929 T C SP140L Missense_Mutation p.C429R 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 231775353 231775353 C T GPR55 Missense_Mutation p.V109I 0.47 tolerated(1) benign(0.008) TCGA-XK-AAIW-01 2 231943409 231943409 G A PSMD1 Missense_Mutation p.V370I 0.34 tolerated(0.65) benign(0.041) TCGA-XK-AAIW-01 2 232079556 232079556 G A ARMC9 Missense_Mutation p.A64T 0.24 tolerated(0.73) benign(0.004) TCGA-XK-AAIW-01 2 232209767 232209767 C T ARMC9 Silent p.P653P 0.34 TCGA-XK-AAIW-01 2 232321455 232321455 G A NCL Missense_Mutation p.A531V 0.35 probably_damaging(0.933) TCGA-XK-AAIW-01 2 232374032 232374032 C T LINC00471 RNA 0.21 TCGA-XK-AAIW-01 2 233001355 233001355 G A DIS3L2 Silent p.R292R 0.40 TCGA-XK-AAIW-01 2 233127987 233127987 G A DIS3L2 Missense_Mutation p.S499N 0.38 tolerated(0.17) benign(0.169) TCGA-XK-AAIW-01 2 233271616 233271616 C A ALPPL2 Silent p.P4P 0.35 TCGA-XK-AAIW-01 2 233323451 233323451 C T ALPI Silent p.S431S 0.23 TCGA-XK-AAIW-01 2 233406157 233406157 C T CHRNG Missense_Mutation p.P142S 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 233407646 233407646 C T CHRNG Missense_Mutation p.A220V 0.48 tolerated(0.3) benign(0.003) TCGA-XK-AAIW-01 2 233498631 233498631 C T EFHD1 Missense_Mutation p.R73W 0.31 deleterious(0.02) possibly_damaging(0.798) TCGA-XK-AAIW-01 2 233744303 233744303 G A NGEF Missense_Mutation p.R677W 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 233756165 233756165 G A NGEF Missense_Mutation p.A392V 0.20 tolerated(0.06) benign(0.076) TCGA-XK-AAIW-01 2 233759451 233759451 C - NGEF Intron 0.50 TCGA-XK-AAIW-01 2 233759598 233759598 G A NGEF Missense_Mutation p.A286V 0.40 deleterious(0) probably_damaging(0.971) TCGA-XK-AAIW-01 2 233990468 233990468 G A INPP5D Silent p.V121V 0.27 TCGA-XK-AAIW-01 2 234173549 234173549 G A ATG16L1 Missense_Mutation p.C134Y 0.44 tolerated(1) benign(0.02) TCGA-XK-AAIW-01 2 234350570 234350570 C A DGKD Missense_Mutation p.L375M 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 234774971 234774971 G A MSL3P1 RNA 0.21 TCGA-XK-AAIW-01 2 235943706 235943706 G T SH3BP4 Missense_Mutation p.E20D 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-XK-AAIW-01 2 235951390 235951390 T C SH3BP4 Silent p.G659G 0.22 TCGA-XK-AAIW-01 2 237074856 237074856 G A GBX2 Missense_Mutation p.R250W 0.38 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 237489379 237489379 C T ACKR3 Silent p.L91L 0.40 TCGA-XK-AAIW-01 2 238002748 238002748 G A COPS8 Missense_Mutation p.R116H 0.48 deleterious(0) possibly_damaging(0.841) TCGA-XK-AAIW-01 2 238002835 238002835 T C COPS8 Missense_Mutation p.V145A 0.34 tolerated(0.26) benign(0.026) TCGA-XK-AAIW-01 2 238256467 238256467 C A COL6A3 Missense_Mutation p.G2338C 0.14 unknown(0) TCGA-XK-AAIW-01 2 238275437 238275437 C T COL6A3 Missense_Mutation p.R1798H 0.12 probably_damaging(0.993) TCGA-XK-AAIW-01 2 238419298 238419298 C T MLPH Silent p.C64C 0.18 TCGA-XK-AAIW-01 2 238434378 238434378 C T MLPH Silent p.H270H 0.28 TCGA-XK-AAIW-01 2 238732966 238732966 T C RBM44 Missense_Mutation p.W786R 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 239082199 239082199 C T ILKAP Missense_Mutation p.R311H 0.39 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 239141089 239141089 G A AC016757.3 5'Flank 0.24 TCGA-XK-AAIW-01 2 239167146 239167146 G A PER2 Silent p.S589S 0.41 TCGA-XK-AAIW-01 2 239176769 239176769 G A PER2 Missense_Mutation p.R299W 0.38 deleterious(0.01) benign(0.001) TCGA-XK-AAIW-01 2 239261531 239261531 G T TRAF3IP1 Missense_Mutation p.E505D 0.45 tolerated(0.59) benign(0.139) TCGA-XK-AAIW-01 2 239344527 239344527 C T ASB1 Missense_Mutation p.H123Y 0.20 tolerated(0.11) probably_damaging(0.999) TCGA-XK-AAIW-01 2 239344584 239344584 C T ASB1 Missense_Mutation p.H142Y 0.38 tolerated(0.73) probably_damaging(0.999) TCGA-XK-AAIW-01 2 239344591 239344591 G A ASB1 Missense_Mutation p.R144H 0.33 tolerated(0.08) probably_damaging(0.976) TCGA-XK-AAIW-01 2 240003880 240003880 T C HDAC4 Missense_Mutation p.Y852C 0.45 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 2 240009300 240009300 G T HDAC4 Missense_Mutation p.A795D 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 240029808 240029808 C T HDAC4 Missense_Mutation p.A679T 0.32 deleterious(0) possibly_damaging(0.896) TCGA-XK-AAIW-01 2 240111765 240111765 C T HDAC4 Missense_Mutation p.A35T 0.48 tolerated(0.37) benign(0.002) TCGA-XK-AAIW-01 2 241069404 241069404 A G MYEOV2 Missense_Mutation p.V102A 0.35 tolerated_low_confidence(0.91) unknown(0) TCGA-XK-AAIW-01 2 241078658 241078658 C T OTOS Missense_Mutation p.A67T 0.33 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 241401798 241401798 G A GPC1 Silent p.E172E 0.40 TCGA-XK-AAIW-01 2 241465186 241465186 C T ANKMY1 Silent p.T328T 0.24 TCGA-XK-AAIW-01 2 241535745 241535745 C T CAPN10 Missense_Mutation p.R430W 0.45 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 2 241555812 241555812 G A GPR35 5'UTR 0.39 TCGA-XK-AAIW-01 2 241631739 241631739 G A AQP12A Silent p.E124E 0.56 TCGA-XK-AAIW-01 2 241683366 241683366 C T KIF1A Missense_Mutation p.V1193M 0.39 tolerated(0.23) possibly_damaging(0.475) TCGA-XK-AAIW-01 2 241713664 241713664 T C KIF1A Missense_Mutation p.T325A 0.50 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 242035248 242035248 T C MTERFD2 3'UTR 0.46 TCGA-XK-AAIW-01 2 242169568 242169568 G A HDLBP Silent p.Y1197Y 0.45 TCGA-XK-AAIW-01 2 242179042 242179042 C T HDLBP Missense_Mutation p.R862H 0.39 deleterious(0.04) possibly_damaging(0.451) TCGA-XK-AAIW-01 2 242202169 242202169 A T HDLBP Missense_Mutation p.V136D 0.14 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 2 242401943 242401943 G A FARP2 Silent p.V531V 0.33 TCGA-XK-AAIW-01 2 242403384 242403384 C T FARP2 Missense_Mutation p.R628C 0.33 tolerated(0.17) benign(0.014) TCGA-XK-AAIW-01 2 242441080 242441080 C T STK25 Missense_Mutation p.R25H 0.35 deleterious(0.04) benign(0.096) TCGA-XK-AAIW-01 2 24246538 24246538 G A MFSD2B Missense_Mutation p.V419I 0.37 deleterious(0.04) probably_damaging(0.993) TCGA-XK-AAIW-01 2 24261860 24261860 G T C2orf44 Missense_Mutation p.L169M 0.44 deleterious(0.02) possibly_damaging(0.648) TCGA-XK-AAIW-01 2 242625237 242625237 G A DTYMK Silent p.D62D 0.36 TCGA-XK-AAIW-01 2 242756135 242756135 G A NEU4 Missense_Mutation p.R96Q 0.19 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 2 242814203 242814203 G A CXXC11 Missense_Mutation p.A166T 0.25 tolerated(0.79) benign(0) TCGA-XK-AAIW-01 2 24406394 24406394 A G FAM228A Missense_Mutation p.E94G 0.26 tolerated(0.08) benign(0.242) TCGA-XK-AAIW-01 2 24427160 24427160 G A ITSN2 Silent p.D1630D 0.40 TCGA-XK-AAIW-01 2 24433672 24433672 C T ITSN2 Missense_Mutation p.V1412M 0.31 deleterious(0.01) unknown(0) TCGA-XK-AAIW-01 2 25468929 25468929 C T DNMT3A Silent p.R478R 0.11 TCGA-XK-AAIW-01 2 25966166 25966166 G A ASXL2 Missense_Mutation p.P1014S 0.43 tolerated(0.49) benign(0.022) TCGA-XK-AAIW-01 2 26534169 26534169 G A GPR113 Silent p.H809H 0.31 TCGA-XK-AAIW-01 2 26539917 26539917 G A GPR113 Missense_Mutation p.A122V 0.53 tolerated_low_confidence(1) benign(0.002) TCGA-XK-AAIW-01 2 26696054 26696054 G A OTOF Nonsense_Mutation p.R1227* 0.43 TCGA-XK-AAIW-01 2 26798783 26798783 G A C2orf70 Missense_Mutation p.V30I 0.29 tolerated(0.22) benign(0.135) TCGA-XK-AAIW-01 2 27001128 27001128 G A SLC35F6 Missense_Mutation p.A289T 0.36 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 272206 272206 C T ACP1 Silent p.S44S 0.55 TCGA-XK-AAIW-01 2 27276350 27276350 G A AGBL5 Missense_Mutation p.S99N 0.38 tolerated(0.12) benign(0.007) TCGA-XK-AAIW-01 2 27282314 27282314 C A AGBL5 Intron 0.29 TCGA-XK-AAIW-01 2 27303628 27303628 C T EMILIN1 Missense_Mutation p.R107C 0.42 probably_damaging(0.987) TCGA-XK-AAIW-01 2 27315233 27315233 C T KHK Silent p.N42N 0.42 TCGA-XK-AAIW-01 2 27320416 27320416 G A KHK Missense_Mutation p.A155T 0.48 tolerated(0.17) benign(0.001) TCGA-XK-AAIW-01 2 27353417 27353417 C T ABHD1 Silent p.A341A 0.25 TCGA-XK-AAIW-01 2 27360614 27360614 C T C2orf53 Missense_Mutation p.C195Y 0.34 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 2 27360640 27360640 G A C2orf53 Silent p.S186S 0.50 TCGA-XK-AAIW-01 2 27372993 27372993 C T TCF23 Silent p.S75S 0.48 TCGA-XK-AAIW-01 2 27447233 27447233 C T CAD Missense_Mutation p.R377C 0.19 tolerated(0.12) benign(0.001) TCGA-XK-AAIW-01 2 27447925 27447925 C T CAD Silent p.G478G 0.48 TCGA-XK-AAIW-01 2 27447963 27447963 C T CAD Missense_Mutation p.A491V 0.38 deleterious(0.04) benign(0.015) TCGA-XK-AAIW-01 2 27454973 27454973 T C CAD Silent p.R842R 0.16 TCGA-XK-AAIW-01 2 27456982 27456982 C - CAD Frame_Shift_Del p.P1171Hfs*40 0.41 TCGA-XK-AAIW-01 2 27460381 27460381 A G CAD Missense_Mutation p.I1511V 0.39 tolerated(0.65) benign(0.001) TCGA-XK-AAIW-01 2 27460732 27460732 C T CAD Silent p.S1570S 0.39 TCGA-XK-AAIW-01 2 27461327 27461327 G A CAD Missense_Mutation p.R1630Q 0.36 tolerated(0.11) benign(0.004) TCGA-XK-AAIW-01 2 27465566 27465566 C A CAD Missense_Mutation p.L2101M 0.38 deleterious(0.02) probably_damaging(0.979) TCGA-XK-AAIW-01 2 27481120 27481120 C T SLC30A3 Silent p.A111A 0.42 TCGA-XK-AAIW-01 2 27559300 27559300 A G GTF3C2 Intron 0.48 TCGA-XK-AAIW-01 2 27590464 27590464 C A EIF2B4 Intron 0.29 TCGA-XK-AAIW-01 2 27595977 27595977 T C SNX17 Intron 0.45 TCGA-XK-AAIW-01 2 27597929 27597929 C T SNX17 Missense_Mutation p.T228M 0.27 deleterious(0) possibly_damaging(0.832) TCGA-XK-AAIW-01 2 27664668 27664668 G A NRBP1 Missense_Mutation p.V533I 0.46 tolerated_low_confidence(0.08) possibly_damaging(0.897) TCGA-XK-AAIW-01 2 27670411 27670411 G A IFT172 Missense_Mutation p.R1544C 0.45 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 2 27800163 27800163 C T C2orf16 Missense_Mutation p.R242W 0.42 tolerated(0.1) benign(0.014) TCGA-XK-AAIW-01 2 29404659 29404659 G A CLIP4 Missense_Mutation p.R673H 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 29416720 29416720 C T ALK Silent p.V1411V 0.19 TCGA-XK-AAIW-01 2 31168721 31168721 C T GALNT14 Missense_Mutation p.V229M 0.10 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 2 31484534 31484534 G A EHD3 Silent p.E345E 0.43 TCGA-XK-AAIW-01 2 31567584 31567584 C T XDH Missense_Mutation p.D1124N 0.21 tolerated(0.24) benign(0.042) TCGA-XK-AAIW-01 2 31611156 31611156 A G XDH Silent p.G167G 0.22 TCGA-XK-AAIW-01 2 31754466 31754466 G T AL133247.2 Intron 0.34 TCGA-XK-AAIW-01 2 3200658 3200658 C A TSSC1 Missense_Mutation p.S216I 0.29 deleterious(0.01) probably_damaging(0.944) TCGA-XK-AAIW-01 2 32728305 32728305 T C BIRC6 Splice_Site p.X3167_splice 0.43 TCGA-XK-AAIW-01 2 32756565 32756565 C T BIRC6 Silent p.L4080L 0.69 TCGA-XK-AAIW-01 2 33588460 33588460 C T LTBP1 Missense_Mutation p.A1425V 0.15 tolerated(0.1) possibly_damaging(0.829) TCGA-XK-AAIW-01 2 33745674 33745674 T C RASGRP3 Silent p.R97R 0.16 TCGA-XK-AAIW-01 2 33809738 33809738 C A FAM98A 3'UTR 0.43 TCGA-XK-AAIW-01 2 3447573 3447573 C T TRAPPC12 Missense_Mutation p.R481C 0.20 deleterious(0.01) benign(0.363) TCGA-XK-AAIW-01 2 3461427 3461427 C T TRAPPC12 Silent p.D522D 0.44 TCGA-XK-AAIW-01 2 3504604 3504604 C T ADI1 Missense_Mutation p.R134H 0.27 deleterious(0.03) possibly_damaging(0.494) TCGA-XK-AAIW-01 2 36704095 36704095 A G CRIM1 Missense_Mutation p.D352G 0.47 tolerated(0.1) probably_damaging(0.995) TCGA-XK-AAIW-01 2 37076751 37076751 G A STRN Missense_Mutation p.R731C 0.17 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 37078199 37078199 G A STRN Missense_Mutation p.P677L 0.32 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 2 37454884 37454884 G A CEBPZ Silent p.S484S 0.35 TCGA-XK-AAIW-01 2 37599550 37599550 G A QPCT Missense_Mutation p.R292Q 0.40 tolerated(1) benign(0) TCGA-XK-AAIW-01 2 38525431 38525431 C T ATL2 Missense_Mutation p.G496D 0.41 deleterious(0) probably_damaging(0.974) TCGA-XK-AAIW-01 2 38978460 38978460 A G SRSF7 5'UTR 0.50 TCGA-XK-AAIW-01 2 39050311 39050311 G A DHX57 Nonsense_Mutation p.R1039* 0.34 TCGA-XK-AAIW-01 2 39237759 39237759 G A SOS1 Nonsense_Mutation p.R826* 0.38 TCGA-XK-AAIW-01 2 39250102 39250102 A G SOS1 Silent p.R489R 0.20 TCGA-XK-AAIW-01 2 39250215 39250215 G A SOS1 Missense_Mutation p.R452C 0.44 deleterious(0) probably_damaging(0.978) TCGA-XK-AAIW-01 2 39964026 39964026 G A THUMPD2 Missense_Mutation p.A454V 0.10 tolerated(1) benign(0) TCGA-XK-AAIW-01 2 40342635 40342635 C T SLC8A1 Missense_Mutation p.A894T 0.36 tolerated(0.47) benign(0.407) TCGA-XK-AAIW-01 2 40657409 40657409 C A SLC8A1 Missense_Mutation p.M4I 0.31 tolerated_low_confidence(0.15) possibly_damaging(0.795) TCGA-XK-AAIW-01 2 42472683 42472683 G T EML4 Missense_Mutation p.D22Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 2 43452136 43452136 C T ZFP36L2 Silent p.Q269Q 0.33 TCGA-XK-AAIW-01 2 43452332 43452332 C T ZFP36L2 Missense_Mutation p.G204D 0.36 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 43801572 43801572 G A THADA Silent p.Y544Y 0.38 TCGA-XK-AAIW-01 2 43937194 43937194 G T PLEKHH2 Missense_Mutation p.D678Y 0.39 deleterious(0) possibly_damaging(0.459) TCGA-XK-AAIW-01 2 43992576 43992576 G A PLEKHH2 Missense_Mutation p.A1441T 0.10 deleterious(0) possibly_damaging(0.815) TCGA-XK-AAIW-01 2 44028050 44028050 A G DYNC2LI1 Missense_Mutation p.D242G 0.09 tolerated(0.08) benign(0) TCGA-XK-AAIW-01 2 44502871 44502871 C T SLC3A1 Missense_Mutation p.A66V 0.57 deleterious(0.05) probably_damaging(0.998) TCGA-XK-AAIW-01 2 44503055 44503055 C A SLC3A1 Nonsense_Mutation p.Y127* 0.38 TCGA-XK-AAIW-01 2 44541027 44541027 T C SLC3A1 Silent p.G518G 0.39 TCGA-XK-AAIW-01 2 44541157 44541157 C T SLC3A1 Intron 0.33 TCGA-XK-AAIW-01 2 45235795 45235795 C T SIX2 Missense_Mutation p.R152H 0.18 tolerated(0.13) possibly_damaging(0.581) TCGA-XK-AAIW-01 2 45236004 45236004 C T SIX2 Silent p.K82K 0.43 TCGA-XK-AAIW-01 2 46203588 46203588 C T PRKCE Missense_Mutation p.R145C 0.47 deleterious(0) possibly_damaging(0.607) TCGA-XK-AAIW-01 2 46237637 46237637 A G PRKCE Missense_Mutation p.Y473C 0.53 deleterious(0.01) benign(0.078) TCGA-XK-AAIW-01 2 47221572 47221572 C A TTC7A Missense_Mutation p.P307H 0.25 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 2 48010321 48010321 T C MSH6 5'UTR 0.52 TCGA-XK-AAIW-01 2 48026079 48026079 G A MSH6 Silent p.T319T 0.40 TCGA-XK-AAIW-01 2 48026577 48026577 G A MSH6 Silent p.Q485Q 0.51 TCGA-XK-AAIW-01 2 48026866 48026866 T - MSH6 Frame_Shift_Del p.F582Lfs*4 0.33 TCGA-XK-AAIW-01 2 54080776 54080776 G T GPR75 Missense_Mutation p.P373H 0.21 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 54483161 54483161 C T TSPYL6 Missense_Mutation p.R43H 0.31 tolerated(0.05) benign(0.401) TCGA-XK-AAIW-01 2 54570911 54570911 G A C2orf73 Missense_Mutation p.D97N 0.33 deleterious(0.01) possibly_damaging(0.465) TCGA-XK-AAIW-01 2 54570996 54570996 C A C2orf73 Missense_Mutation p.P125H 0.41 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 2 54848567 54848567 C T SPTBN1 Missense_Mutation p.S265F 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 54856594 54856594 G A SPTBN1 Missense_Mutation p.D775N 0.57 deleterious(0) possibly_damaging(0.537) TCGA-XK-AAIW-01 2 54858170 54858170 C T SPTBN1 Missense_Mutation p.R996C 0.36 deleterious(0) probably_damaging(0.965) TCGA-XK-AAIW-01 2 55254135 55254135 T A RTN4 Missense_Mutation p.D367V 0.41 deleterious(0) possibly_damaging(0.536) TCGA-XK-AAIW-01 2 58386446 58386446 G A FANCL 3'UTR 0.30 TCGA-XK-AAIW-01 2 60688246 60688246 T C BCL11A Missense_Mutation p.T601A 0.47 tolerated(0.53) benign(0) TCGA-XK-AAIW-01 2 60689317 60689317 G A BCL11A Missense_Mutation p.P244S 0.30 tolerated(0.09) benign(0.374) TCGA-XK-AAIW-01 2 60695920 60695920 C T BCL11A Missense_Mutation p.G145E 0.30 tolerated(0.21) benign(0.023) TCGA-XK-AAIW-01 2 61006774 61006774 C T PAPOLG Missense_Mutation p.R233C 0.44 deleterious(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 2 61175289 61175289 C T PUS10 Missense_Mutation p.R447H 0.25 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 61463362 61463362 C T USP34 Nonsense_Mutation p.W2284* 0.32 TCGA-XK-AAIW-01 2 61575066 61575066 G A USP34 Nonsense_Mutation p.R742* 0.46 TCGA-XK-AAIW-01 2 62363165 62363165 G A COMMD1 3'UTR 0.45 TCGA-XK-AAIW-01 2 63058166 63058166 G A EHBP1 Missense_Mutation p.M169I 0.49 deleterious(0) benign(0.418) TCGA-XK-AAIW-01 2 63175805 63175805 C A EHBP1 Nonsense_Mutation p.Y643* 0.42 TCGA-XK-AAIW-01 2 63833095 63833095 T C MDH1 Missense_Mutation p.V289A 0.36 deleterious(0) possibly_damaging(0.751) TCGA-XK-AAIW-01 2 64120618 64120618 T - VPS54 Frame_Shift_Del p.G961Afs*7 0.26 TCGA-XK-AAIW-01 2 65243578 65243578 G A SLC1A4 Missense_Mutation p.V269I 0.22 tolerated(0.24) benign(0.144) TCGA-XK-AAIW-01 2 65243582 65243582 C A SLC1A4 Missense_Mutation p.P270H 0.23 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 65561755 65561755 G A SPRED2 Silent p.I119I 0.10 TCGA-XK-AAIW-01 2 66670093 66670093 G A MEIS1 Missense_Mutation p.M181I 0.39 deleterious(0.01) probably_damaging(0.98) TCGA-XK-AAIW-01 2 68521098 68521098 G A CNRIP1 Missense_Mutation p.R131W 0.36 deleterious(0) probably_damaging(0.95) TCGA-XK-AAIW-01 2 68740263 68740263 C T APLF Silent p.S131S 0.30 TCGA-XK-AAIW-01 2 68794512 68794512 G A APLF Silent p.T442T 0.40 TCGA-XK-AAIW-01 2 68882132 68882132 C T PROKR1 Silent p.T202T 0.36 TCGA-XK-AAIW-01 2 68882258 68882258 C T PROKR1 Silent p.P244P 0.42 TCGA-XK-AAIW-01 2 69409770 69409770 G A ANTXR1 Missense_Mutation p.R444Q 0.38 tolerated(0.39) benign(0.269) TCGA-XK-AAIW-01 2 69757829 69757829 C T AAK1 Silent p.T222T 0.29 TCGA-XK-AAIW-01 2 7003601 7003601 C T CMPK2 Missense_Mutation p.A262T 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 2 70047882 70047882 G T ANXA4 Nonsense_Mutation p.E279* 0.47 TCGA-XK-AAIW-01 2 7018222 7018222 C A RSAD2 Silent p.S97S 0.32 TCGA-XK-AAIW-01 2 70187991 70187991 G A ASPRV1 Missense_Mutation p.A277V 0.34 tolerated(0.15) possibly_damaging(0.883) TCGA-XK-AAIW-01 2 70188206 70188206 C T ASPRV1 Silent p.V205V 0.32 TCGA-XK-AAIW-01 2 70463280 70463280 C T TIA1 Silent p.V18V 0.32 TCGA-XK-AAIW-01 2 70502099 70502099 G A PCYOX1 Missense_Mutation p.R168H 0.46 deleterious(0.03) probably_damaging(0.973) TCGA-XK-AAIW-01 2 70903983 70903983 G A ADD2 Missense_Mutation p.A513V 0.38 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 71012724 71012724 T C FIGLA Silent p.S144S 0.15 TCGA-XK-AAIW-01 2 71047617 71047617 C T CLEC4F Silent p.Q13Q 0.46 TCGA-XK-AAIW-01 2 71577014 71577014 C T ZNF638 Silent p.S310S 0.36 TCGA-XK-AAIW-01 2 71650194 71650194 G A ZNF638 Missense_Mutation p.A1184T 0.49 tolerated(1) benign(0) TCGA-XK-AAIW-01 2 71788950 71788950 G A DYSF Missense_Mutation p.R762H 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 71816734 71816734 G T DYSF Missense_Mutation p.M1138I 0.50 tolerated(0.19) benign(0.001) TCGA-XK-AAIW-01 2 71909728 71909728 G A DYSF Missense_Mutation p.R2081H 0.42 deleterious(0.02) probably_damaging(0.967) TCGA-XK-AAIW-01 2 72359683 72359683 G A CYP26B1 Silent p.P404P 0.19 TCGA-XK-AAIW-01 2 72562096 72562096 C T EXOC6B Missense_Mutation p.A726T 0.10 tolerated(0.43) possibly_damaging(0.672) TCGA-XK-AAIW-01 2 73677127 73677127 C T ALMS1 Missense_Mutation p.A1157V 0.34 benign(0.061) TCGA-XK-AAIW-01 2 74086401 74086401 G A STAMBP Silent p.A342A 0.44 TCGA-XK-AAIW-01 2 74300738 74300738 G A TET3 Missense_Mutation p.A718T 0.31 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 2 74327724 74327724 C T TET3 Missense_Mutation p.T1135I 0.23 deleterious(0.01) benign(0.063) TCGA-XK-AAIW-01 2 74327797 74327797 C T TET3 Silent p.P1159P 0.30 TCGA-XK-AAIW-01 2 74328451 74328451 G A TET3 Silent p.P1377P 0.40 TCGA-XK-AAIW-01 2 74441226 74441226 T C MTHFD2 Missense_Mutation p.Y304H 0.36 tolerated(0.25) benign(0.098) TCGA-XK-AAIW-01 2 74454146 74454146 G T SLC4A5 Missense_Mutation p.L1026I 0.38 tolerated(0.29) benign(0.002) TCGA-XK-AAIW-01 2 74492275 74492275 G A SLC4A5 Missense_Mutation p.T173M 0.16 deleterious(0.02) possibly_damaging(0.882) TCGA-XK-AAIW-01 2 74492358 74492358 G A SLC4A5 Silent p.G145G 0.25 TCGA-XK-AAIW-01 2 74593948 74593948 C T DCTN1 Missense_Mutation p.A810T 0.14 tolerated(0.1) possibly_damaging(0.493) TCGA-XK-AAIW-01 2 74605347 74605347 G A DCTN1 Missense_Mutation p.A20V 0.34 tolerated_low_confidence(0.44) benign(0.001) TCGA-XK-AAIW-01 2 74653319 74653319 G A RTKN 3'UTR 0.37 TCGA-XK-AAIW-01 2 74653438 74653438 G A RTKN Nonsense_Mutation p.R542* 0.36 TCGA-XK-AAIW-01 2 74688821 74688821 G A MOGS Silent p.L699L 0.44 TCGA-XK-AAIW-01 2 74742790 74742790 G A TLX2 Missense_Mutation p.R144H 0.10 deleterious(0.01) possibly_damaging(0.532) TCGA-XK-AAIW-01 2 74742863 74742863 G A TLX2 Silent p.Q168Q 0.38 TCGA-XK-AAIW-01 2 75107402 75107402 C T HK2 Missense_Mutation p.R426C 0.35 tolerated(0.13) benign(0.046) TCGA-XK-AAIW-01 2 75107502 75107502 T C HK2 Missense_Mutation p.V459A 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-XK-AAIW-01 2 75115100 75115100 C T HK2 Missense_Mutation p.R764C 0.31 deleterious(0.05) probably_damaging(0.93) TCGA-XK-AAIW-01 2 75425955 75425955 C T TACR1 Missense_Mutation p.A36T 0.43 tolerated(0.11) benign(0.295) TCGA-XK-AAIW-01 2 79348783 79348783 C T REG1A Missense_Mutation p.R54C 0.19 deleterious(0.04) possibly_damaging(0.834) TCGA-XK-AAIW-01 2 80808885 80808885 C T CTNNA2 Missense_Mutation p.R650C 0.52 deleterious(0.01) possibly_damaging(0.84) TCGA-XK-AAIW-01 2 84660507 84660507 C T SUCLG1 Silent p.T214T 0.48 TCGA-XK-AAIW-01 2 84811192 84811192 C T DNAH6 Missense_Mutation p.P767S 0.39 deleterious(0.02) benign(0.066) TCGA-XK-AAIW-01 2 85273242 85273242 G A KCMF1 Missense_Mutation p.V148I 0.26 tolerated(0.54) benign(0.028) TCGA-XK-AAIW-01 2 85510659 85510659 C T TCF7L1 Silent p.S161S 0.36 TCGA-XK-AAIW-01 2 85777082 85777082 G A GGCX Missense_Mutation p.P751L 0.18 tolerated_low_confidence(0.17) benign(0.021) TCGA-XK-AAIW-01 2 85778163 85778163 C T GGCX Silent p.T591T 0.38 TCGA-XK-AAIW-01 2 85818895 85818895 G A VAMP5 Silent p.T17T 0.29 TCGA-XK-AAIW-01 2 85890791 85890791 G A SFTPB Silent p.G296G 0.64 TCGA-XK-AAIW-01 2 85922499 85922499 C T GNLY Missense_Mutation p.R37C 0.26 tolerated(1) benign(0) TCGA-XK-AAIW-01 2 86304988 86304988 A G POLR1A Silent p.I458I 0.13 TCGA-XK-AAIW-01 2 86406606 86406606 C T IMMT Missense_Mutation p.E87K 0.22 tolerated(0.15) possibly_damaging(0.487) TCGA-XK-AAIW-01 2 86439675 86439675 G A MRPL35 3'UTR 0.35 TCGA-XK-AAIW-01 2 86509339 86509339 G A REEP1 Missense_Mutation p.A27V 0.37 deleterious(0) probably_damaging(0.979) TCGA-XK-AAIW-01 2 86701961 86701961 A G KDM3A Missense_Mutation p.D596G 0.13 tolerated(0.05) probably_damaging(0.998) TCGA-XK-AAIW-01 2 86707425 86707425 A G KDM3A Missense_Mutation p.T818A 0.11 tolerated(0.47) benign(0.001) TCGA-XK-AAIW-01 2 86716755 86716755 G A KDM3A Silent p.T1182T 0.22 TCGA-XK-AAIW-01 2 86832362 86832362 T C RNF103 Missense_Mutation p.E221G 0.40 tolerated(0.32) benign(0.002) TCGA-XK-AAIW-01 2 86839316 86839316 G A RNF103 Missense_Mutation p.R150C 0.41 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 2 88484886 88484886 G A THNSL2 Missense_Mutation p.A373T 0.42 tolerated(0.45) benign(0.008) TCGA-XK-AAIW-01 2 89197299 89197299 C T IGKV5-2 Missense_Mutation p.P115L 0.52 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 2 89247280 89247280 G A IGKV1-5 Silent p.V5V 0.36 TCGA-XK-AAIW-01 2 89265836 89265836 C T IGKV1-6 Missense_Mutation p.S99N 0.40 tolerated(0.19) benign(0.07) TCGA-XK-AAIW-01 2 89309530 89309530 C T IGKV1-9 Silent p.L100L 0.38 TCGA-XK-AAIW-01 2 89986855 89986855 A T IGKV2D-29 Missense_Mutation p.S46C 0.57 deleterious(0) benign(0.375) TCGA-XK-AAIW-01 2 95818980 95818980 C T ZNF514 Missense_Mutation p.A7T 0.36 deleterious(0.04) benign(0.255) TCGA-XK-AAIW-01 2 9637268 9637268 C T ADAM17 Silent p.Q586Q 0.41 TCGA-XK-AAIW-01 2 96686970 96686970 C A GPAT2 3'Flank 0.45 TCGA-XK-AAIW-01 2 96690302 96690302 C T GPAT2 Silent p.A514A 0.17 TCGA-XK-AAIW-01 2 96781468 96781468 C T ADRA2B Missense_Mutation p.A141T 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 2 96789953 96789953 C T ASTL Missense_Mutation p.R311Q 0.25 tolerated_low_confidence(0.36) benign(0.004) TCGA-XK-AAIW-01 2 96964107 96964107 C A SNRNP200 Missense_Mutation p.R345M 0.18 tolerated(0.11) benign(0.289) TCGA-XK-AAIW-01 2 96993213 96993213 G A ITPRIPL1 Missense_Mutation p.V290M 0.35 tolerated(0.24) probably_damaging(0.999) TCGA-XK-AAIW-01 2 97216922 97216922 G T ARID5A Missense_Mutation p.Q219H 0.41 tolerated(0.12) benign(0.336) TCGA-XK-AAIW-01 2 97216925 97216925 C T ARID5A Silent p.G220G 0.31 TCGA-XK-AAIW-01 2 9731520 9731520 C T YWHAQ Splice_Site p.X140_splice 0.31 TCGA-XK-AAIW-01 2 97427091 97427091 C T CNNM4 Nonsense_Mutation p.Q119* 0.37 TCGA-XK-AAIW-01 2 97463370 97463370 G A CNNM4 Missense_Mutation p.R556H 0.33 deleterious(0) possibly_damaging(0.879) TCGA-XK-AAIW-01 2 97506646 97506646 G A ANKRD23 Nonsense_Mutation p.Q102* 0.34 TCGA-XK-AAIW-01 2 97877447 97877447 G A ANKRD36 Silent p.T1146T 0.40 TCGA-XK-AAIW-01 2 98264505 98264505 C T COX5B Silent p.G108G 0.22 TCGA-XK-AAIW-01 2 98340697 98340697 C T ZAP70 Silent p.N66N 0.50 TCGA-XK-AAIW-01 2 98351166 98351166 G A ZAP70 Missense_Mutation p.R358H 0.44 deleterious(0.01) possibly_damaging(0.783) TCGA-XK-AAIW-01 2 98351716 98351716 G T ZAP70 Missense_Mutation p.K362N 0.20 tolerated(0.16) possibly_damaging(0.575) TCGA-XK-AAIW-01 2 98354040 98354040 G A ZAP70 Missense_Mutation p.R465H 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 2 98373685 98373685 G T TMEM131 Silent p.P1843P 0.32 TCGA-XK-AAIW-01 2 99155420 99155420 C T INPP4A Nonsense_Mutation p.R216* 0.17 TCGA-XK-AAIW-01 2 99193459 99193459 G A INPP4A Missense_Mutation p.R885H 0.37 tolerated(0.06) probably_damaging(1) TCGA-XK-AAIW-01 2 99279509 99279509 C A MGAT4A Missense_Mutation p.E179D 0.46 deleterious(0) possibly_damaging(0.474) TCGA-XK-AAIW-01 2 99454682 99454682 A G KIAA1211L Missense_Mutation p.S47P 0.15 tolerated(0.08) possibly_damaging(0.504) TCGA-XK-AAIW-01 3 100002532 100002532 G A TBC1D23 Missense_Mutation p.R118H 0.37 deleterious(0.03) possibly_damaging(0.718) TCGA-XK-AAIW-01 3 100471765 100471765 C A ABI3BP Missense_Mutation p.R952I 0.22 tolerated(1) probably_damaging(0.944) TCGA-XK-AAIW-01 3 10050219 10050219 C T AC022007.5 RNA 0.58 TCGA-XK-AAIW-01 3 101085438 101085438 G T SENP7 Missense_Mutation p.A385D 0.39 tolerated(0.2) benign(0.197) TCGA-XK-AAIW-01 3 10146209 10146209 T C FANCD2OS Missense_Mutation p.N84D 0.57 tolerated(0.55) benign(0) TCGA-XK-AAIW-01 3 101572708 101572708 G A NFKBIZ Splice_Site p.X446_splice 0.35 TCGA-XK-AAIW-01 3 10191469 10191469 A G VHL Splice_Site p.X155_splice 0.37 TCGA-XK-AAIW-01 3 10219598 10219598 G A IRAK2 Silent p.T57T 0.31 TCGA-XK-AAIW-01 3 10219625 10219625 G C IRAK2 Missense_Mutation p.M66I 0.31 tolerated(0.07) possibly_damaging(0.779) TCGA-XK-AAIW-01 3 10276298 10276298 G A IRAK2 Silent p.T476T 0.26 TCGA-XK-AAIW-01 3 105377969 105377969 C T CBLB Missense_Mutation p.V932I 0.43 tolerated_low_confidence(0.24) possibly_damaging(0.607) TCGA-XK-AAIW-01 3 105400474 105400474 C T CBLB Intron 0.32 TCGA-XK-AAIW-01 3 105422838 105422838 T C CBLB Silent p.S529S 0.14 TCGA-XK-AAIW-01 3 105438945 105438945 G A CBLB Silent p.D451D 0.42 TCGA-XK-AAIW-01 3 107778299 107778299 C A CD47 Missense_Mutation p.A231S 0.41 tolerated(0.28) probably_damaging(0.996) TCGA-XK-AAIW-01 3 108072521 108072521 G A HHLA2 Silent p.A104A 0.34 TCGA-XK-AAIW-01 3 108117552 108117552 G A MYH15 Missense_Mutation p.R1709C 0.39 tolerated(0.08) benign(0.005) TCGA-XK-AAIW-01 3 108163617 108163617 G A MYH15 Missense_Mutation p.A862V 0.38 deleterious(0.02) benign(0.014) TCGA-XK-AAIW-01 3 108175705 108175705 T C MYH15 Silent p.L702L 0.37 TCGA-XK-AAIW-01 3 108363630 108363630 T C DZIP3 Splice_Site p.X587_splice 0.48 TCGA-XK-AAIW-01 3 108677852 108677852 C A MORC1 Missense_Mutation p.R972I 0.47 tolerated_low_confidence(0.19) benign(0.001) TCGA-XK-AAIW-01 3 10976794 10976794 G A SLC6A11 Missense_Mutation p.G552D 0.38 deleterious(0.01) possibly_damaging(0.635) TCGA-XK-AAIW-01 3 10979978 10979978 C T SLC6A11 Missense_Mutation p.R597W 0.28 deleterious(0) possibly_damaging(0.506) TCGA-XK-AAIW-01 3 11061942 11061942 G A SLC6A1 Missense_Mutation p.R172H 0.38 tolerated(0.45) benign(0.021) TCGA-XK-AAIW-01 3 110852711 110852711 G A PVRL3 Silent p.T433T 0.09 TCGA-XK-AAIW-01 3 111564770 111564770 G A PLCXD2 3'UTR 0.10 TCGA-XK-AAIW-01 3 111996574 111996574 G A SLC9C1 Missense_Mutation p.P151L 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 112337901 112337901 G A CCDC80 Missense_Mutation p.R696C 0.18 deleterious(0.04) possibly_damaging(0.86) TCGA-XK-AAIW-01 3 112357079 112357079 G A CCDC80 Silent p.N558N 0.44 TCGA-XK-AAIW-01 3 112358653 112358653 C T CCDC80 Missense_Mutation p.G34R 0.42 tolerated_low_confidence(0.15) benign(0.336) TCGA-XK-AAIW-01 3 112724716 112724716 T C C3orf17 Silent p.P457P 0.33 TCGA-XK-AAIW-01 3 112969475 112969475 C T BOC Silent p.C57C 0.44 TCGA-XK-AAIW-01 3 11301661 11301661 C T HRH1 Missense_Mutation p.A313V 0.32 tolerated(0.37) benign(0.002) TCGA-XK-AAIW-01 3 113172662 113172662 C T SPICE1 Missense_Mutation p.R598H 0.13 tolerated(0.57) benign(0.009) TCGA-XK-AAIW-01 3 113342297 113342297 G A SIDT1 Missense_Mutation p.R705H 0.39 tolerated(0.2) benign(0.184) TCGA-XK-AAIW-01 3 113375667 113375667 A G KIAA2018 Missense_Mutation p.V1621A 0.44 benign(0.174) TCGA-XK-AAIW-01 3 113442298 113442298 C T NAA50 Missense_Mutation p.C79Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 113514787 113514787 G A ATP6V1A Splice_Site p.X430_splice 0.27 TCGA-XK-AAIW-01 3 113684058 113684058 G A ZDHHC23 3'Flank 0.22 TCGA-XK-AAIW-01 3 114058118 114058118 G A ZBTB20 Missense_Mutation p.R654C 0.40 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 3 114069597 114069597 C A ZBTB20 Missense_Mutation p.S443I 0.33 deleterious(0.01) benign(0.146) TCGA-XK-AAIW-01 3 118931506 118931506 A G B4GALT4 Missense_Mutation p.S309P 0.37 tolerated(0.25) benign(0.023) TCGA-XK-AAIW-01 3 119133271 119133271 G A ARHGAP31 Missense_Mutation p.S832N 0.49 tolerated(0.27) benign(0.002) TCGA-XK-AAIW-01 3 120424911 120424911 G A RABL3 Missense_Mutation p.R107C 0.14 tolerated(0.19) benign(0) TCGA-XK-AAIW-01 3 120469788 120469788 C A GTF2E1 Missense_Mutation p.P130H 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 120871393 120871393 G T STXBP5L Missense_Mutation p.V247F 0.29 tolerated(0.31) benign(0.003) TCGA-XK-AAIW-01 3 121208979 121208979 T - POLQ Frame_Shift_Del p.K933Nfs*2 0.35 TCGA-XK-AAIW-01 3 121345607 121345607 G A FBXO40 Missense_Mutation p.M660I 0.40 tolerated(0.19) possibly_damaging(0.664) TCGA-XK-AAIW-01 3 121409891 121409891 C A GOLGB1 Missense_Mutation p.A2774S 0.40 possibly_damaging(0.615) TCGA-XK-AAIW-01 3 121415986 121415986 C A GOLGB1 Missense_Mutation p.Q1128H 0.13 benign(0.043) TCGA-XK-AAIW-01 3 121630452 121630452 C T SLC15A2 Missense_Mutation p.L123F 0.16 tolerated(0.07) benign(0.223) TCGA-XK-AAIW-01 3 121822507 121822507 C T CD86 Silent p.G71G 0.35 TCGA-XK-AAIW-01 3 121828160 121828160 C T CD86 Missense_Mutation p.A251V 0.20 tolerated(0.17) benign(0.326) TCGA-XK-AAIW-01 3 122003464 122003464 C T CASR Missense_Mutation p.T898M 0.38 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-XK-AAIW-01 3 12203621 12203621 T C TIMP4 5'Flank 0.31 TCGA-XK-AAIW-01 3 122126189 122126189 G A FAM162A Missense_Mutation p.A109T 0.57 deleterious(0) possibly_damaging(0.828) TCGA-XK-AAIW-01 3 122133439 122133439 C T WDR5B Missense_Mutation p.A313T 0.40 deleterious(0.03) possibly_damaging(0.731) TCGA-XK-AAIW-01 3 122433212 122433212 C A PARP14 Silent p.S1312S 0.40 TCGA-XK-AAIW-01 3 122552256 122552256 C T DIRC2 Missense_Mutation p.R266W 0.39 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 3 123009994 123009994 C T ADCY5 Missense_Mutation p.R1098Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 123010043 123010043 C T ADCY5 Missense_Mutation p.E1082K 0.17 deleterious(0) possibly_damaging(0.89) TCGA-XK-AAIW-01 3 123426765 123426765 G A MYLK Silent p.C742C 0.43 TCGA-XK-AAIW-01 3 124017682 124017682 C T KALRN Silent p.S336S 0.39 TCGA-XK-AAIW-01 3 124385389 124385389 C T KALRN Missense_Mutation p.R238C 0.36 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 3 124456423 124456423 C T UMPS Missense_Mutation p.R107C 0.38 deleterious(0) benign(0.104) TCGA-XK-AAIW-01 3 124456654 124456654 G A UMPS Missense_Mutation p.E184K 0.61 tolerated(0.75) benign(0.002) TCGA-XK-AAIW-01 3 124731627 124731627 G A HEG1 Silent p.G932G 0.19 TCGA-XK-AAIW-01 3 124906083 124906083 G A SLC12A8 Nonsense_Mutation p.Q130* 0.50 TCGA-XK-AAIW-01 3 125216976 125216976 T C SNX4 Missense_Mutation p.E109G 0.24 deleterious(0) probably_damaging(0.967) TCGA-XK-AAIW-01 3 125271044 125271044 G A OSBPL11 Silent p.G545G 0.33 TCGA-XK-AAIW-01 3 125271087 125271087 G A OSBPL11 Missense_Mutation p.A531V 0.36 tolerated(0.1) possibly_damaging(0.766) TCGA-XK-AAIW-01 3 125694467 125694467 G A ROPN1B Missense_Mutation p.A60T 0.36 tolerated(0.48) benign(0.004) TCGA-XK-AAIW-01 3 126071361 126071361 C T KLF15 Silent p.R135R 0.15 TCGA-XK-AAIW-01 3 126707689 126707689 G A PLXNA1 Missense_Mutation p.V85I 0.41 tolerated(0.2) benign(0.077) TCGA-XK-AAIW-01 3 126708434 126708434 A G PLXNA1 Missense_Mutation p.D333G 0.46 tolerated(0.39) benign(0.029) TCGA-XK-AAIW-01 3 126734114 126734114 G T PLXNA1 Missense_Mutation p.G989C 0.53 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 126737303 126737303 G A PLXNA1 Missense_Mutation p.R1276H 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 3 126740951 126740951 G A PLXNA1 Silent p.S1354S 0.35 TCGA-XK-AAIW-01 3 126749233 126749233 C T PLXNA1 Missense_Mutation p.R1737C 0.10 deleterious(0.04) probably_damaging(0.91) TCGA-XK-AAIW-01 3 126751581 126751581 G A PLXNA1 Missense_Mutation p.A1833T 0.18 deleterious(0.03) possibly_damaging(0.63) TCGA-XK-AAIW-01 3 127298945 127298945 C T TPRA1 Silent p.A15A 0.26 TCGA-XK-AAIW-01 3 127337956 127337956 C T MCM2 Silent p.S700S 0.25 TCGA-XK-AAIW-01 3 127388016 127388016 C T PODXL2 Silent p.L466L 0.27 TCGA-XK-AAIW-01 3 127395843 127395843 A G ABTB1 Missense_Mutation p.D187G 0.50 deleterious(0) probably_damaging(0.969) TCGA-XK-AAIW-01 3 127682079 127682079 C A KBTBD12 Missense_Mutation p.L514I 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 127872522 127872522 G A EEFSEC Missense_Mutation p.V58M 0.23 deleterious(0) possibly_damaging(0.61) TCGA-XK-AAIW-01 3 12791290 12791290 A G TMEM40 Silent p.S14S 0.45 TCGA-XK-AAIW-01 3 128127153 128127153 C A EEFSEC 3'UTR 0.50 TCGA-XK-AAIW-01 3 128181497 128181497 G A DNAJB8 Missense_Mutation p.R198C 0.42 deleterious(0) possibly_damaging(0.87) TCGA-XK-AAIW-01 3 12859357 12859357 C T CAND2 Missense_Mutation p.R976W 0.44 deleterious(0) possibly_damaging(0.453) TCGA-XK-AAIW-01 3 12869094 12869094 C T CAND2 Silent p.Y1122Y 0.23 TCGA-XK-AAIW-01 3 128712142 128712142 C T KIAA1257 Silent p.S2S 0.25 TCGA-XK-AAIW-01 3 128890476 128890476 C A CNBP Splice_Site p.X42_splice 0.12 TCGA-XK-AAIW-01 3 128971754 128971754 G T COPG1 Missense_Mutation p.K93N 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 128979598 128979598 G A COPG1 Missense_Mutation p.R359H 0.29 deleterious(0) possibly_damaging(0.881) TCGA-XK-AAIW-01 3 129188250 129188250 G A IFT122 Missense_Mutation p.S320N 0.40 tolerated(0.29) benign(0.209) TCGA-XK-AAIW-01 3 129214427 129214427 C T IFT122 Missense_Mutation p.L780F 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 129218783 129218783 G A IFT122 Missense_Mutation p.M800I 0.49 tolerated(0.26) benign(0.001) TCGA-XK-AAIW-01 3 129251457 129251457 G A RHO Missense_Mutation p.A260T 0.41 deleterious(0) benign(0.16) TCGA-XK-AAIW-01 3 129275039 129275039 G A PLXND1 3'UTR 0.35 TCGA-XK-AAIW-01 3 129280710 129280710 C T PLXND1 Missense_Mutation p.R1621Q 0.38 tolerated(0.34) benign(0.319) TCGA-XK-AAIW-01 3 129817216 129817216 C T AC083906.2 3'Flank 0.53 TCGA-XK-AAIW-01 3 129824431 129824431 G A FAM86HP RNA 0.36 TCGA-XK-AAIW-01 3 130424583 130424583 T G PIK3R4 Missense_Mutation p.K918N 0.54 tolerated(0.39) benign(0.138) TCGA-XK-AAIW-01 3 130463754 130463754 C T PIK3R4 Silent p.R103R 0.37 TCGA-XK-AAIW-01 3 130737469 130737469 G T ASTE1 Missense_Mutation p.P465H 0.23 deleterious(0) probably_damaging(0.929) TCGA-XK-AAIW-01 3 131186992 131186992 C T MRPL3 Silent p.K279K 0.27 TCGA-XK-AAIW-01 3 131220553 131220553 G A MRPL3 Silent p.H33H 0.40 TCGA-XK-AAIW-01 3 132050506 132050506 C T ACPP Missense_Mutation p.H78Y 0.27 deleterious(0) probably_damaging(0.931) TCGA-XK-AAIW-01 3 132175576 132175576 G A DNAJC13 Missense_Mutation p.D417N 0.42 tolerated(0.11) benign(0.007) TCGA-XK-AAIW-01 3 132207163 132207163 A G DNAJC13 Missense_Mutation p.I1097V 0.30 tolerated(0.67) benign(0.015) TCGA-XK-AAIW-01 3 133119015 133119015 C T BFSP2 Missense_Mutation p.P30S 0.36 tolerated(0.76) benign(0.001) TCGA-XK-AAIW-01 3 133356748 133356748 T C TOPBP1 Missense_Mutation p.K831R 0.38 tolerated(0.05) possibly_damaging(0.542) TCGA-XK-AAIW-01 3 13361408 13361408 T C NUP210 Silent p.T1746T 0.35 TCGA-XK-AAIW-01 3 133647492 133647492 C T C3orf36 Silent p.T52T 0.56 TCGA-XK-AAIW-01 3 13381471 13381471 G A NUP210 Silent p.S1118S 0.43 TCGA-XK-AAIW-01 3 133878153 133878153 T C RYK Missense_Mutation p.D548G 0.35 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 3 133941272 133941272 G A RYK Missense_Mutation p.A113V 0.39 deleterious(0.01) benign(0.029) TCGA-XK-AAIW-01 3 13418955 13418955 C T NUP210 Splice_Site p.X384_splice 0.37 TCGA-XK-AAIW-01 3 134670843 134670843 C T EPHB1 Nonsense_Mutation p.R252* 0.15 TCGA-XK-AAIW-01 3 136078015 136078015 G A STAG1 Nonsense_Mutation p.R971* 0.48 TCGA-XK-AAIW-01 3 13611972 13611972 G A FBLN2 Silent p.P39P 0.45 TCGA-XK-AAIW-01 3 13612935 13612935 G A FBLN2 Silent p.P360P 0.29 TCGA-XK-AAIW-01 3 136699336 136699336 G T IL20RB Missense_Mutation p.Q39H 0.43 deleterious(0) probably_damaging(0.951) TCGA-XK-AAIW-01 3 136714374 136714374 C T IL20RB Silent p.P267P 0.40 TCGA-XK-AAIW-01 3 1371501 1371501 A - CNTN6 Frame_Shift_Del p.K418Sfs*63 0.30 TCGA-XK-AAIW-01 3 137483730 137483730 A G SOX14 Missense_Mutation p.N35S 0.50 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 3 137483986 137483986 C T SOX14 Silent p.S120S 0.43 TCGA-XK-AAIW-01 3 137717905 137717905 C T CLDN18 Silent p.G65G 0.44 TCGA-XK-AAIW-01 3 138121062 138121062 G A MRAS Missense_Mutation p.R193Q 0.18 tolerated(0.3) benign(0.033) TCGA-XK-AAIW-01 3 138189867 138189867 G A ESYT3 Missense_Mutation p.R580Q 0.42 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 3 138191607 138191607 G A ESYT3 Missense_Mutation p.A715T 0.41 tolerated(0.44) benign(0.004) TCGA-XK-AAIW-01 3 13860467 13860467 G A WNT7A Missense_Mutation p.R342C 0.33 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 3 138763018 138763018 C T PRR23C Missense_Mutation p.A149T 0.33 tolerated(0.11) probably_damaging(0.999) TCGA-XK-AAIW-01 3 139085507 139085507 G A COPB2 Missense_Mutation p.T596I 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 139088199 139088199 G A COPB2 Silent p.G435G 0.15 TCGA-XK-AAIW-01 3 13916637 13916637 G A WNT7A Silent p.S35S 0.35 TCGA-XK-AAIW-01 3 140265510 140265510 G A CLSTN2 Missense_Mutation p.G554D 0.38 tolerated(0.16) benign(0.067) TCGA-XK-AAIW-01 3 140409974 140409974 C T TRIM42 Silent p.Y675Y 0.37 TCGA-XK-AAIW-01 3 141011925 141011925 C T ACPL2 Missense_Mutation p.R441C 0.36 deleterious(0.05) possibly_damaging(0.462) TCGA-XK-AAIW-01 3 141290329 141290329 C T RASA2 Silent p.L368L 0.34 TCGA-XK-AAIW-01 3 142137378 142137378 G A XRN1 Silent p.Y438Y 0.09 TCGA-XK-AAIW-01 3 14214486 14214486 G A XPC Silent p.C60C 0.32 TCGA-XK-AAIW-01 3 142180885 142180885 T C ATR Silent p.R2363R 0.31 TCGA-XK-AAIW-01 3 14225447 14225447 A G LSM3 Missense_Mutation p.Q48R 0.12 tolerated(0.06) possibly_damaging(0.457) TCGA-XK-AAIW-01 3 142402951 142402951 G A PLS1 Missense_Mutation p.G228E 0.33 deleterious(0) benign(0.184) TCGA-XK-AAIW-01 3 142681178 142681178 C T PAQR9 Missense_Mutation p.R334H 0.36 deleterious(0.03) benign(0.211) TCGA-XK-AAIW-01 3 142840257 142840257 T C CHST2 Missense_Mutation p.V200A 0.21 deleterious(0) possibly_damaging(0.608) TCGA-XK-AAIW-01 3 142841089 142841089 G A CHST2 Silent p.T477T 0.12 TCGA-XK-AAIW-01 3 1445156 1445156 T A CNTN6 3'UTR 0.30 TCGA-XK-AAIW-01 3 14489255 14489255 G A SLC6A6 Missense_Mutation p.R177H 0.38 tolerated(0.17) possibly_damaging(0.864) TCGA-XK-AAIW-01 3 146167020 146167020 G A PLSCR2 Silent p.A279A 0.44 TCGA-XK-AAIW-01 3 14695972 14695972 G A CCDC174 Missense_Mutation p.E28K 0.25 deleterious(0.01) benign(0.004) TCGA-XK-AAIW-01 3 147114235 147114235 C T ZIC4 Missense_Mutation p.G81D 0.27 tolerated(0.09) probably_damaging(0.994) TCGA-XK-AAIW-01 3 147131197 147131197 C T ZIC1 Silent p.Y401Y 0.46 TCGA-XK-AAIW-01 3 14756916 14756916 G T C3orf20 Missense_Mutation p.K478N 0.34 deleterious(0) probably_damaging(0.923) TCGA-XK-AAIW-01 3 14768435 14768435 G A C3orf20 Missense_Mutation p.D532N 0.41 deleterious(0.02) probably_damaging(0.949) TCGA-XK-AAIW-01 3 148459669 148459669 G A AGTR1 Missense_Mutation p.A283T 0.12 tolerated(0.06) probably_damaging(0.926) TCGA-XK-AAIW-01 3 148601523 148601523 T C CPA3 Missense_Mutation p.I301T 0.34 deleterious(0) possibly_damaging(0.872) TCGA-XK-AAIW-01 3 148777552 148777552 G C HLTF Missense_Mutation p.A443G 0.34 tolerated(0.06) benign(0.003) TCGA-XK-AAIW-01 3 14939561 14939561 C T FGD5 Missense_Mutation p.L1009F 0.37 tolerated(0.17) possibly_damaging(0.861) TCGA-XK-AAIW-01 3 149470004 149470004 G A COMMD2 Silent p.G46G 0.40 TCGA-XK-AAIW-01 3 149686268 149686268 C T PFN2 Missense_Mutation p.A68T 0.41 deleterious(0.03) benign(0.007) TCGA-XK-AAIW-01 3 150289880 150289880 C T EIF2A Missense_Mutation p.P316L 0.41 deleterious(0.01) probably_damaging(0.991) TCGA-XK-AAIW-01 3 150644648 150644648 G A CLRN1 3'Flank 0.39 TCGA-XK-AAIW-01 3 151017967 151017967 G T GPR87 5'UTR 0.46 TCGA-XK-AAIW-01 3 151107924 151107924 G A MED12L Splice_Site p.X1835_splice 0.32 TCGA-XK-AAIW-01 3 151150562 151150562 G A MED12L Silent p.V2136V 0.16 TCGA-XK-AAIW-01 3 151155715 151155715 C T IGSF10 Missense_Mutation p.V2212I 0.26 tolerated(0.16) possibly_damaging(0.635) TCGA-XK-AAIW-01 3 15127455 15127455 G A ZFYVE20 Silent p.S101S 0.21 TCGA-XK-AAIW-01 3 15311358 15311358 C T SH3BP5 Silent p.T119T 0.43 TCGA-XK-AAIW-01 3 15311378 15311378 G A SH3BP5 Silent p.L113L 0.33 TCGA-XK-AAIW-01 3 153840055 153840055 G A ARHGEF26 Missense_Mutation p.A92T 0.44 tolerated_low_confidence(1) benign(0.001) TCGA-XK-AAIW-01 3 154002379 154002379 G A DHX36 Missense_Mutation p.A762V 0.38 tolerated(0.11) possibly_damaging(0.652) TCGA-XK-AAIW-01 3 154010465 154010465 G A DHX36 Silent p.V563V 0.26 TCGA-XK-AAIW-01 3 15492902 15492902 A T COLQ 3'UTR 0.21 TCGA-XK-AAIW-01 3 155199255 155199255 G A PLCH1 Silent p.G1528G 0.20 TCGA-XK-AAIW-01 3 155232512 155232512 C A PLCH1 Missense_Mutation p.Q532H 0.32 deleterious(0) possibly_damaging(0.897) TCGA-XK-AAIW-01 3 155232632 155232632 C T PLCH1 Silent p.R492R 0.47 TCGA-XK-AAIW-01 3 155861202 155861202 G A KCNAB1 Intron 0.12 TCGA-XK-AAIW-01 3 156009631 156009631 C T KCNAB1 Intron 0.47 TCGA-XK-AAIW-01 3 156009906 156009906 C T KCNAB1 Intron 0.33 TCGA-XK-AAIW-01 3 156411910 156411910 A G TIPARP Missense_Mutation p.N340S 0.37 tolerated(0.52) benign(0.003) TCGA-XK-AAIW-01 3 15686298 15686298 G A BTD Missense_Mutation p.G312D 0.08 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 156983435 156983435 G A VEPH1 Silent p.G715G 0.31 TCGA-XK-AAIW-01 3 158015856 158015856 G T RSRC1 Nonsense_Mutation p.E175* 0.25 TCGA-XK-AAIW-01 3 158390150 158390150 C T LXN Missense_Mutation p.A40T 0.16 deleterious(0.01) possibly_damaging(0.518) TCGA-XK-AAIW-01 3 158408054 158408054 G A GFM1 Missense_Mutation p.R671H 0.34 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 3 158409297 158409297 G A GFM1 3'UTR 0.37 TCGA-XK-AAIW-01 3 158787202 158787202 G T IQCJ 5'UTR 0.44 TCGA-XK-AAIW-01 3 158991628 158991628 C T IQCJ-SCHIP1 Intron 0.44 TCGA-XK-AAIW-01 3 159713351 159713351 C T IL12A 3'UTR 0.29 TCGA-XK-AAIW-01 3 160783259 160783259 G A PPM1L Missense_Mutation p.G215R 0.42 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 3 164709962 164709962 T C SI Intron 0.48 TCGA-XK-AAIW-01 3 164777791 164777791 C A SI Missense_Mutation p.A349S 0.39 tolerated(0.79) benign(0.167) TCGA-XK-AAIW-01 3 164906130 164906130 A G SLITRK3 Missense_Mutation p.I830T 0.30 deleterious(0.01) possibly_damaging(0.508) TCGA-XK-AAIW-01 3 164906504 164906504 G A SLITRK3 Silent p.C705C 0.32 TCGA-XK-AAIW-01 3 165548402 165548402 C T BCHE Nonsense_Mutation p.W140* 0.34 TCGA-XK-AAIW-01 3 16646771 16646771 G A DAZL 5'Flank 0.37 TCGA-XK-AAIW-01 3 167293928 167293928 G T WDR49 Silent p.L88L 0.36 TCGA-XK-AAIW-01 3 167508391 167508391 G A SERPINI1 Splice_Site p.X161_splice 0.46 TCGA-XK-AAIW-01 3 168802695 168802695 C T MECOM 3'UTR 0.33 TCGA-XK-AAIW-01 3 168819908 168819908 G A MECOM Missense_Mutation p.A781V 0.40 deleterious(0.04) benign(0.089) TCGA-XK-AAIW-01 3 169656274 169656274 C T SAMD7 Nonsense_Mutation p.R441* 0.41 TCGA-XK-AAIW-01 3 169889192 169889192 A G PHC3 Missense_Mutation p.V128A 0.25 tolerated(0.22) probably_damaging(0.968) TCGA-XK-AAIW-01 3 169953062 169953062 G A PRKCI Missense_Mutation p.G49D 0.41 tolerated(0.69) possibly_damaging(0.447) TCGA-XK-AAIW-01 3 170198432 170198432 G A SLC7A14 Missense_Mutation p.R547W 0.35 deleterious(0.01) possibly_damaging(0.582) TCGA-XK-AAIW-01 3 17052134 17052134 G A PLCL2 Silent p.L306L 0.46 TCGA-XK-AAIW-01 3 172013301 172013301 A G FNDC3B Missense_Mutation p.Y333C 0.08 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 3 172046812 172046812 G A FNDC3B Missense_Mutation p.C442Y 0.41 tolerated(0.98) benign(0.001) TCGA-XK-AAIW-01 3 172166029 172166029 C T GHSR Missense_Mutation p.A59T 0.35 tolerated(0.64) benign(0.001) TCGA-XK-AAIW-01 3 172480331 172480331 T C ECT2 Missense_Mutation p.M295T 0.51 tolerated(0.56) benign(0.099) TCGA-XK-AAIW-01 3 17447938 17447938 C T TBC1D5 Missense_Mutation p.S83N 0.11 tolerated(0.08) probably_damaging(0.99) TCGA-XK-AAIW-01 3 174974281 174974281 G A NAALADL2 Missense_Mutation p.A301T 0.48 deleterious(0) possibly_damaging(0.844) TCGA-XK-AAIW-01 3 178560711 178560711 C T KCNMB2 Missense_Mutation p.R232W 0.48 deleterious(0) probably_damaging(0.913) TCGA-XK-AAIW-01 3 178916935 178916935 C T PIK3CA Missense_Mutation p.R108C 0.34 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 3 178937024 178937024 C A PIK3CA Missense_Mutation p.L569I 0.34 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 3 179069813 179069813 T - MFN1 Frame_Shift_Del p.F81Lfs*28 0.32 TCGA-XK-AAIW-01 3 179085366 179085366 G A MFN1 Missense_Mutation p.G298E 0.44 deleterious(0) possibly_damaging(0.532) TCGA-XK-AAIW-01 3 179287663 179287663 G A ACTL6A Missense_Mutation p.G26D 0.11 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 179320470 179320470 T C MRPL47 Missense_Mutation p.K72E 0.43 tolerated(0.38) benign(0.113) TCGA-XK-AAIW-01 3 180322340 180322340 C A TTC14 Missense_Mutation p.L216I 0.18 deleterious(0.03) benign(0.391) TCGA-XK-AAIW-01 3 180323592 180323593 - A TTC14 Frame_Shift_Ins p.Q302Tfs*15 0.29 TCGA-XK-AAIW-01 3 180704808 180704808 G T DNAJC19 Silent p.A44A 0.35 TCGA-XK-AAIW-01 3 182870252 182870252 C T LAMP3 Missense_Mutation p.A267T 0.40 tolerated(0.4) benign(0.004) TCGA-XK-AAIW-01 3 182941898 182941898 G A MCF2L2 Silent p.C732C 0.37 TCGA-XK-AAIW-01 3 182988041 182988041 G T B3GNT5 Missense_Mutation p.R152M 0.43 tolerated(0.12) benign(0.001) TCGA-XK-AAIW-01 3 183056679 183056679 A G MCF2L2 Missense_Mutation p.I132T 0.42 deleterious(0) possibly_damaging(0.61) TCGA-XK-AAIW-01 3 183508767 183508767 C T YEATS2 Silent p.S1032S 0.10 TCGA-XK-AAIW-01 3 183689508 183689508 C T ABCC5 Missense_Mutation p.R535H 0.15 tolerated(0.27) benign(0) TCGA-XK-AAIW-01 3 183696309 183696309 G A ABCC5 Silent p.F426F 0.20 TCGA-XK-AAIW-01 3 183703152 183703152 G A ABCC5 Intron 0.34 TCGA-XK-AAIW-01 3 183772516 183772516 C T HTR3C Silent p.G25G 0.38 TCGA-XK-AAIW-01 3 183976188 183976188 C T ECE2 Intron 0.33 TCGA-XK-AAIW-01 3 184045675 184045675 C T EIF4G1 Missense_Mutation p.R1287W 0.36 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 3 184075770 184075770 C T CLCN2 Missense_Mutation p.G199R 0.28 deleterious(0.02) possibly_damaging(0.479) TCGA-XK-AAIW-01 3 184090552 184090552 C T THPO Missense_Mutation p.A271T 0.33 tolerated_low_confidence(0.1) benign(0.01) TCGA-XK-AAIW-01 3 184295154 184295154 C T EPHB3 Missense_Mutation p.R460C 0.33 deleterious(0) possibly_damaging(0.773) TCGA-XK-AAIW-01 3 184297350 184297350 C T EPHB3 Silent p.D629D 0.49 TCGA-XK-AAIW-01 3 184567775 184567775 G A VPS8 Missense_Mutation p.A240T 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 3 18462459 18462459 T C SATB1 Translation_Start_Site p.M1? 0.26 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-XK-AAIW-01 3 184769729 184769729 G A VPS8 Silent p.S1401S 0.34 TCGA-XK-AAIW-01 3 185169094 185169094 C T MAP3K13 Nonsense_Mutation p.R397* 0.36 TCGA-XK-AAIW-01 3 186256470 186256470 G A CRYGS 3'UTR 0.38 TCGA-XK-AAIW-01 3 186272347 186272347 C T TBCCD1 Missense_Mutation p.V414I 0.37 tolerated(0.7) benign(0.005) TCGA-XK-AAIW-01 3 186793684 186793684 C T ST6GAL1 3'UTR 0.30 TCGA-XK-AAIW-01 3 189526227 189526227 C T TP63 Missense_Mutation p.A164V 0.29 tolerated(0.96) probably_damaging(0.992) TCGA-XK-AAIW-01 3 190126206 190126206 T C CLDN16 Silent p.F232F 0.36 TCGA-XK-AAIW-01 3 193052824 193052824 A G ATP13A5 Silent p.C336C 0.34 TCGA-XK-AAIW-01 3 193209164 193209164 G A ATP13A4 Missense_Mutation p.T186I 0.46 tolerated(0.29) benign(0.04) TCGA-XK-AAIW-01 3 194117532 194117532 G A GP5 Missense_Mutation p.P494S 0.47 tolerated(0.11) benign(0.002) TCGA-XK-AAIW-01 3 194309172 194309172 G A TMEM44 3'UTR 0.33 TCGA-XK-AAIW-01 3 194392894 194392894 C T LSG1 5'UTR 0.35 TCGA-XK-AAIW-01 3 195016454 195016454 G A ACAP2 Missense_Mutation p.A552V 0.42 tolerated(0.37) benign(0.001) TCGA-XK-AAIW-01 3 195028045 195028045 G A ACAP2 Missense_Mutation p.P306L 0.40 tolerated(0.35) benign(0.025) TCGA-XK-AAIW-01 3 195452857 195452857 G A MUC20 Silent p.L461L 0.26 TCGA-XK-AAIW-01 3 195475931 195475931 G A MUC4 Silent p.N5292N 0.13 TCGA-XK-AAIW-01 3 195505287 195505287 C T MUC4 Missense_Mutation p.R4277H 0.43 possibly_damaging(0.775) TCGA-XK-AAIW-01 3 195594514 195594514 C A TNK2 Missense_Mutation p.E948D 0.23 tolerated_low_confidence(0.84) possibly_damaging(0.721) TCGA-XK-AAIW-01 3 195599151 195599151 C T TNK2 Missense_Mutation p.D546N 0.54 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 3 195611759 195611759 C T TNK2 Missense_Mutation p.R190H 0.25 tolerated(0.63) benign(0) TCGA-XK-AAIW-01 3 195701286 195701286 C T SDHAP1 RNA 0.27 TCGA-XK-AAIW-01 3 19575323 19575323 C T KCNH8 Missense_Mutation p.T1019M 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.594) TCGA-XK-AAIW-01 3 195782158 195782158 A C TFRC Silent p.P564P 0.14 TCGA-XK-AAIW-01 3 195796403 195796403 C A TFRC Missense_Mutation p.D242Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 195968904 195968904 C T PCYT1A Missense_Mutation p.R208Q 0.42 deleterious(0) probably_damaging(0.978) TCGA-XK-AAIW-01 3 195975094 195975094 C T PCYT1A Silent p.T106T 0.40 TCGA-XK-AAIW-01 3 196236507 196236507 C T SMCO1 Silent p.Q28Q 0.43 TCGA-XK-AAIW-01 3 196386840 196386840 G T NRROS Missense_Mutation p.S109I 0.39 tolerated(0.18) possibly_damaging(0.649) TCGA-XK-AAIW-01 3 196547287 196547287 G A PAK2 Missense_Mutation p.R400H 0.18 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 196921376 196921376 C T DLG1 Missense_Mutation p.V135I 0.40 tolerated_low_confidence(0.07) possibly_damaging(0.508) TCGA-XK-AAIW-01 3 197619592 197619592 G A IQCG Silent p.Y334Y 0.38 TCGA-XK-AAIW-01 3 197678115 197678115 G A RPL35A Missense_Mutation p.V33I 0.35 deleterious(0.02) benign(0.118) TCGA-XK-AAIW-01 3 197707373 197707373 C T LMLN Silent p.D242D 0.42 TCGA-XK-AAIW-01 3 197762892 197762892 C T LMLN Silent p.N652N 0.32 TCGA-XK-AAIW-01 3 19921210 19921210 G A EFHB Silent p.H805H 0.33 TCGA-XK-AAIW-01 3 20142838 20142838 A G KAT2B Silent p.T243T 0.35 TCGA-XK-AAIW-01 3 20167421 20167421 G A KAT2B Missense_Mutation p.A480T 0.37 tolerated(0.06) benign(0.443) TCGA-XK-AAIW-01 3 20216081 20216081 G A SGOL1 Silent p.S314S 0.38 TCGA-XK-AAIW-01 3 21467132 21467132 C T ZNF385D Missense_Mutation p.R235Q 0.33 tolerated(0.19) possibly_damaging(0.885) TCGA-XK-AAIW-01 3 25470290 25470290 C T RARB Missense_Mutation p.P23L 0.38 deleterious_low_confidence(0.03) benign(0.238) TCGA-XK-AAIW-01 3 25761538 25761538 G A NGLY1 Nonsense_Mutation p.R586* 0.40 TCGA-XK-AAIW-01 3 25820135 25820135 G A NGLY1 Missense_Mutation p.T59I 0.46 deleterious(0.01) possibly_damaging(0.549) TCGA-XK-AAIW-01 3 26751371 26751371 T C LRRC3B Missense_Mutation p.Y70H 0.17 tolerated(0.48) possibly_damaging(0.876) TCGA-XK-AAIW-01 3 28304845 28304845 A C CMC1 Missense_Mutation p.K28T 0.34 deleterious(0) possibly_damaging(0.622) TCGA-XK-AAIW-01 3 28562551 28562551 G A ZCWPW2 Missense_Mutation p.A285T 0.36 tolerated(0.23) benign(0.002) TCGA-XK-AAIW-01 3 2944670 2944670 C T CNTN4 Silent p.N396N 0.26 TCGA-XK-AAIW-01 3 3030068 3030068 C T CNTN4 Silent p.N466N 0.06 TCGA-XK-AAIW-01 3 3084089 3084089 C T CNTN4 Nonsense_Mutation p.R832* 0.43 TCGA-XK-AAIW-01 3 3085292 3085292 C T CNTN4 Silent p.P905P 0.40 TCGA-XK-AAIW-01 3 30880563 30880563 C T GADL1 Missense_Mutation p.V277M 0.32 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 3 3178985 3178985 G T TRNT1 Nonsense_Mutation p.G64* 0.32 TCGA-XK-AAIW-01 3 31921246 31921246 C A OSBPL10 Nonsense_Mutation p.G120* 0.12 TCGA-XK-AAIW-01 3 3215789 3215789 G A CRBN Missense_Mutation p.R111W 0.27 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 3 32180128 32180128 T C GPD1L Missense_Mutation p.V92A 0.44 deleterious(0) possibly_damaging(0.837) TCGA-XK-AAIW-01 3 32811431 32811431 C T CNOT10 Missense_Mutation p.A746V 0.43 deleterious(0.02) possibly_damaging(0.781) TCGA-XK-AAIW-01 3 32932570 32932570 G A TRIM71 Missense_Mutation p.R625H 0.50 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 3 32933082 32933082 C T TRIM71 Missense_Mutation p.R796C 0.36 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 3 33099744 33099744 G A GLB1 Silent p.G190G 0.32 TCGA-XK-AAIW-01 3 33109737 33109737 G A GLB1 Missense_Mutation p.R148C 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 33174149 33174149 G T CRTAP Missense_Mutation p.R342M 0.37 deleterious(0) benign(0.185) TCGA-XK-AAIW-01 3 33194726 33194726 C T SUSD5 Silent p.T466T 0.33 TCGA-XK-AAIW-01 3 33415377 33415377 C T FBXL2 Silent p.C207C 0.30 TCGA-XK-AAIW-01 3 33450268 33450268 C T UBP1 Missense_Mutation p.E281K 0.32 tolerated(0.35) benign(0.218) TCGA-XK-AAIW-01 3 33877564 33877564 C G PDCD6IP Missense_Mutation p.A293G 0.36 tolerated(0.09) benign(0.009) TCGA-XK-AAIW-01 3 35770907 35770907 G C ARPP21 Silent p.V412V 0.24 TCGA-XK-AAIW-01 3 35778841 35778841 C A ARPP21 Missense_Mutation p.P510H 0.38 tolerated(0.65) benign(0.003) TCGA-XK-AAIW-01 3 36485034 36485034 C T STAC Missense_Mutation p.A97V 0.43 tolerated(0.46) benign(0.018) TCGA-XK-AAIW-01 3 36780206 36780206 C T DCLK3 5'UTR 0.39 TCGA-XK-AAIW-01 3 36898725 36898725 C T TRANK1 Missense_Mutation p.D786N 0.42 deleterious(0.05) benign(0.228) TCGA-XK-AAIW-01 3 37033940 37033940 G A EPM2AIP1 Missense_Mutation p.T210I 0.44 tolerated(0.06) probably_damaging(0.983) TCGA-XK-AAIW-01 3 37090489 37090489 C T MLH1 Missense_Mutation p.S695L 0.41 tolerated(0.33) benign(0.003) TCGA-XK-AAIW-01 3 37095269 37095269 G A LRRFIP2 3'UTR 0.57 TCGA-XK-AAIW-01 3 37367742 37367742 G T GOLGA4 Missense_Mutation p.Q1477H 0.29 probably_damaging(0.935) TCGA-XK-AAIW-01 3 38012927 38012927 C T CTDSPL Silent p.D152D 0.50 TCGA-XK-AAIW-01 3 38022319 38022319 C T CTDSPL Silent p.D264D 0.34 TCGA-XK-AAIW-01 3 38048184 38048184 G A VILL Missense_Mutation p.R817H 0.29 tolerated(0.29) benign(0.009) TCGA-XK-AAIW-01 3 38050790 38050790 G A PLCD1 Missense_Mutation p.R548C 0.46 deleterious(0) probably_damaging(0.918) TCGA-XK-AAIW-01 3 38104200 38104200 T C DLEC1 Silent p.P334P 0.28 TCGA-XK-AAIW-01 3 38167088 38167088 C T ACAA1 Silent p.T389T 0.30 TCGA-XK-AAIW-01 3 38182003 38182003 C T MYD88 Silent p.R209R 0.44 TCGA-XK-AAIW-01 3 38354889 38354889 C T SLC22A14 Missense_Mutation p.P359L 0.37 tolerated(0.07) benign(0.176) TCGA-XK-AAIW-01 3 38357177 38357177 G A SLC22A14 Missense_Mutation p.A503T 0.42 deleterious(0.04) benign(0.408) TCGA-XK-AAIW-01 3 38408366 38408366 T C XYLB Splice_Site p.X191_splice 0.33 TCGA-XK-AAIW-01 3 38545115 38545115 G A EXOG Missense_Mutation p.A155T 0.35 tolerated(0.18) possibly_damaging(0.574) TCGA-XK-AAIW-01 3 38783942 38783942 G T SCN10A Missense_Mutation p.P649H 0.33 deleterious(0) possibly_damaging(0.895) TCGA-XK-AAIW-01 3 3886434 3886434 G A LRRN1 Missense_Mutation p.V37I 0.29 tolerated(0.08) benign(0.259) TCGA-XK-AAIW-01 3 3886567 3886567 G A LRRN1 Missense_Mutation p.S81N 0.29 deleterious(0) possibly_damaging(0.54) TCGA-XK-AAIW-01 3 38936264 38936264 C A SCN11A Missense_Mutation p.Q865H 0.30 tolerated(0.06) benign(0.226) TCGA-XK-AAIW-01 3 39139612 39139612 G A GORASP1 3'UTR 0.23 TCGA-XK-AAIW-01 3 39159586 39159586 T C TTC21A Missense_Mutation p.I248T 0.41 deleterious(0.03) possibly_damaging(0.756) TCGA-XK-AAIW-01 3 39225883 39225883 G A XIRP1 Missense_Mutation p.T1685I 0.35 deleterious(0.03) benign(0.018) TCGA-XK-AAIW-01 3 39227003 39227003 G A XIRP1 Missense_Mutation p.P1312S 0.41 tolerated(0.43) benign(0.003) TCGA-XK-AAIW-01 3 39227656 39227656 C T XIRP1 Missense_Mutation p.R1094Q 0.47 tolerated(0.48) benign(0.001) TCGA-XK-AAIW-01 3 39230145 39230145 G A XIRP1 Silent p.N264N 0.33 TCGA-XK-AAIW-01 3 40275408 40275408 C T MYRIP Missense_Mutation p.A655V 0.32 deleterious(0) probably_damaging(0.954) TCGA-XK-AAIW-01 3 403458 403458 C T CHL1 Silent p.C461C 0.29 TCGA-XK-AAIW-01 3 40453444 40453444 G A ENTPD3 Missense_Mutation p.R143H 0.43 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 40457492 40457492 G A ENTPD3 Silent p.T253T 0.55 TCGA-XK-AAIW-01 3 41267003 41267003 G A CTNNB1 Missense_Mutation p.R225H 0.35 deleterious(0) benign(0.207) TCGA-XK-AAIW-01 3 42264875 42264875 G A TRAK1 Silent p.V836V 0.21 TCGA-XK-AAIW-01 3 42679568 42679568 G T NKTR Missense_Mutation p.R791M 0.38 tolerated_low_confidence(0.08) possibly_damaging(0.549) TCGA-XK-AAIW-01 3 42680699 42680699 C T NKTR Missense_Mutation p.T1168M 0.50 tolerated_low_confidence(0.35) possibly_damaging(0.662) TCGA-XK-AAIW-01 3 42827562 42827562 G A HIGD1A Missense_Mutation p.R78C 0.40 tolerated(0.09) benign(0.157) TCGA-XK-AAIW-01 3 42906501 42906501 G A ACKR2 Nonsense_Mutation p.W169* 0.08 TCGA-XK-AAIW-01 3 42906816 42906816 G A ACKR2 Silent p.T274T 0.43 TCGA-XK-AAIW-01 3 43121556 43121556 G T POMGNT2 Silent p.S456S 0.69 TCGA-XK-AAIW-01 3 43121705 43121705 G A POMGNT2 Missense_Mutation p.R407W 0.16 tolerated(0.11) probably_damaging(0.999) TCGA-XK-AAIW-01 3 43122910 43122910 G A POMGNT2 Missense_Mutation p.A5V 0.46 tolerated_low_confidence(0.07) unknown(0) TCGA-XK-AAIW-01 3 4354786 4354786 C A SETMAR Missense_Mutation p.L121M 0.35 tolerated_low_confidence(0.26) benign(0.14) TCGA-XK-AAIW-01 3 44448965 44448965 G A TCAIM Missense_Mutation p.A428T 0.42 tolerated(0.49) benign(0.017) TCGA-XK-AAIW-01 3 4452611 4452611 C T SUMF1 Missense_Mutation p.A298T 0.36 deleterious(0.01) possibly_damaging(0.663) TCGA-XK-AAIW-01 3 44636460 44636460 C T ZNF660 Nonsense_Mutation p.R259* 0.40 TCGA-XK-AAIW-01 3 44893290 44893290 T C KIF15 Missense_Mutation p.V1273A 0.44 tolerated(0.29) benign(0.174) TCGA-XK-AAIW-01 3 45636598 45636598 G A LIMD1 Missense_Mutation p.G76D 0.43 deleterious(0) possibly_damaging(0.741) TCGA-XK-AAIW-01 3 45715854 45715854 G A LIMD1 Missense_Mutation p.R615H 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 3 45746682 45746682 C T SACM1L Silent p.G62G 0.32 TCGA-XK-AAIW-01 3 45837913 45837913 G A SLC6A20 5'UTR 0.47 TCGA-XK-AAIW-01 3 46244868 46244868 G A CCR1 Missense_Mutation p.R313W 0.59 tolerated(0.21) benign(0.007) TCGA-XK-AAIW-01 3 46414416 46414416 C T CCR5 Missense_Mutation p.P8L 0.30 tolerated(0.06) benign(0.002) TCGA-XK-AAIW-01 3 46592981 46592981 C A LRRC2 Missense_Mutation p.R34M 0.34 deleterious(0) probably_damaging(0.959) TCGA-XK-AAIW-01 3 46753878 46753878 G A PRSS50 Missense_Mutation p.A339V 0.40 deleterious(0.03) probably_damaging(0.966) TCGA-XK-AAIW-01 3 47041142 47041142 G A NBEAL2 Silent p.L1242L 0.44 TCGA-XK-AAIW-01 3 47042568 47042568 C T NBEAL2 Silent p.S1461S 0.35 TCGA-XK-AAIW-01 3 47043455 47043455 G A NBEAL2 Missense_Mutation p.A1610T 0.42 tolerated(0.26) benign(0.002) TCGA-XK-AAIW-01 3 47047523 47047523 C T NBEAL2 Missense_Mutation p.L2297F 0.32 deleterious(0.05) possibly_damaging(0.838) TCGA-XK-AAIW-01 3 47049635 47049635 G A NBEAL2 Missense_Mutation p.A2560T 0.45 deleterious(0.05) possibly_damaging(0.688) TCGA-XK-AAIW-01 3 47049880 47049880 C T NBEAL2 Silent p.S2609S 0.46 TCGA-XK-AAIW-01 3 4709136 4709136 G A ITPR1 Missense_Mutation p.A582T 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 3 47125634 47125634 C T SETD2 Missense_Mutation p.R1879H 0.41 deleterious(0) possibly_damaging(0.863) TCGA-XK-AAIW-01 3 47364158 47364158 C T KLHL18 Nonsense_Mutation p.Q121* 0.10 TCGA-XK-AAIW-01 3 47455371 47455371 C T SCAP Silent p.V1271V 0.40 TCGA-XK-AAIW-01 3 47458688 47458688 C T SCAP Missense_Mutation p.A994T 0.31 deleterious(0.01) possibly_damaging(0.83) TCGA-XK-AAIW-01 3 47618849 47618849 C T CSPG5 Missense_Mutation p.A223T 0.30 tolerated_low_confidence(0.09) benign(0.069) TCGA-XK-AAIW-01 3 47882389 47882389 G A DHX30 Missense_Mutation p.R130Q 0.15 tolerated(0.61) benign(0.243) TCGA-XK-AAIW-01 3 47888469 47888469 T G DHX30 Missense_Mutation p.L636R 0.33 tolerated(0.55) benign(0.002) TCGA-XK-AAIW-01 3 47891423 47891423 G A DHX30 Missense_Mutation p.R1133H 0.21 tolerated(0.18) benign(0.296) TCGA-XK-AAIW-01 3 47912426 47912426 T C MAP4 Silent p.K912K 0.20 TCGA-XK-AAIW-01 3 48200534 48200534 C T CDC25A Silent p.E492E 0.39 TCGA-XK-AAIW-01 3 48200940 48200940 C T CDC25A Missense_Mutation p.R443Q 0.40 deleterious(0.02) probably_damaging(0.983) TCGA-XK-AAIW-01 3 4824396 4824396 G A ITPR1 Missense_Mutation p.G2146R 0.29 deleterious(0) probably_damaging(0.918) TCGA-XK-AAIW-01 3 48414814 48414814 C T FBXW12 Missense_Mutation p.A36V 0.36 deleterious(0) probably_damaging(0.925) TCGA-XK-AAIW-01 3 48457572 48457572 G A PLXNB1 Missense_Mutation p.P1162L 0.33 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 48461154 48461154 G A PLXNB1 Silent p.G847G 0.25 TCGA-XK-AAIW-01 3 48473935 48473935 G A CCDC51 Silent p.D373D 0.42 TCGA-XK-AAIW-01 3 48613965 48613965 G A COL7A1 Missense_Mutation p.T1909M 0.70 unknown(0) TCGA-XK-AAIW-01 3 48615753 48615753 C T COL7A1 Splice_Site p.X1844_splice 0.48 TCGA-XK-AAIW-01 3 48617238 48617238 C A COL7A1 Nonsense_Mutation p.G1712* 0.45 TCGA-XK-AAIW-01 3 48629119 48629119 G A COL7A1 Silent p.T498T 0.46 TCGA-XK-AAIW-01 3 48683650 48683650 C T CELSR3 Missense_Mutation p.V2446M 0.38 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 3 48686637 48686637 G A CELSR3 Missense_Mutation p.R2162W 0.40 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 48694698 48694698 G A CELSR3 Missense_Mutation p.R1278C 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 48697959 48697959 G A CELSR3 Silent p.S703S 0.12 TCGA-XK-AAIW-01 3 48699531 48699531 G A CELSR3 Silent p.H179H 0.39 TCGA-XK-AAIW-01 3 48820520 48820520 C A PRKAR2A Missense_Mutation p.Q147H 0.45 deleterious(0) possibly_damaging(0.838) TCGA-XK-AAIW-01 3 49027944 49027944 C T P4HTM Silent p.S85S 0.21 TCGA-XK-AAIW-01 3 49038923 49038923 G A P4HTM Silent p.A163A 0.52 TCGA-XK-AAIW-01 3 49050727 49050727 G A WDR6 Missense_Mutation p.R617H 0.44 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 3 49050849 49050849 G A WDR6 Missense_Mutation p.V658I 0.47 tolerated(0.06) possibly_damaging(0.474) TCGA-XK-AAIW-01 3 49053301 49053301 C T DALRD3 Missense_Mutation p.C483Y 0.38 deleterious(0.04) possibly_damaging(0.887) TCGA-XK-AAIW-01 3 49057649 49057649 G A DALRD3 5'Flank 0.44 TCGA-XK-AAIW-01 3 49094396 49094396 C T QRICH1 Missense_Mutation p.V413I 0.20 deleterious(0.04) benign(0.041) TCGA-XK-AAIW-01 3 49148431 49148431 C T USP19 Missense_Mutation p.C1164Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 49153358 49153358 C A USP19 Missense_Mutation p.K495N 0.36 tolerated(0.05) probably_damaging(0.954) TCGA-XK-AAIW-01 3 49158715 49158715 G A LAMB2 Missense_Mutation p.R1781C 0.32 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 3 49159636 49159636 G A LAMB2 Missense_Mutation p.R1581C 0.36 deleterious(0.01) possibly_damaging(0.847) TCGA-XK-AAIW-01 3 49159665 49159665 G A LAMB2 Missense_Mutation p.A1571V 0.47 tolerated(0.44) benign(0.046) TCGA-XK-AAIW-01 3 49161443 49161443 C T LAMB2 Missense_Mutation p.R1172H 0.46 deleterious(0.04) probably_damaging(1) TCGA-XK-AAIW-01 3 49169075 49169075 C T LAMB2 Missense_Mutation p.D181N 0.31 tolerated(0.56) benign(0.239) TCGA-XK-AAIW-01 3 49568797 49568797 G A DAG1 Missense_Mutation p.A285T 0.42 tolerated(1) benign(0) TCGA-XK-AAIW-01 3 49690940 49690940 C T BSN Silent p.L1317L 0.30 TCGA-XK-AAIW-01 3 49691866 49691866 C T BSN Missense_Mutation p.P1626L 0.48 unknown(0) TCGA-XK-AAIW-01 3 49693650 49693650 C T BSN Missense_Mutation p.R2221C 0.50 unknown(0) TCGA-XK-AAIW-01 3 49720516 49720516 G A APEH Missense_Mutation p.R677H 0.24 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 49735362 49735362 C T RNF123 Silent p.C129C 0.38 TCGA-XK-AAIW-01 3 49753836 49753836 C T RNF123 Silent p.S1142S 0.44 TCGA-XK-AAIW-01 3 49755426 49755426 C T AMIGO3 Silent p.E491E 0.52 TCGA-XK-AAIW-01 3 49755492 49755492 C A AMIGO3 Missense_Mutation p.Q469H 0.35 deleterious(0.02) possibly_damaging(0.669) TCGA-XK-AAIW-01 3 49758036 49758036 C A RNF123 Missense_Mutation p.P1198H 0.18 tolerated(0.13) benign(0.005) TCGA-XK-AAIW-01 3 49759462 49759462 C T GMPPB Missense_Mutation p.R296Q 0.35 tolerated(0.38) benign(0.083) TCGA-XK-AAIW-01 3 49760429 49760429 G A GMPPB Silent p.H126H 0.13 TCGA-XK-AAIW-01 3 49842153 49842153 C T FAM212A Silent p.N199N 0.38 TCGA-XK-AAIW-01 3 49847305 49847305 C T UBA7 Missense_Mutation p.R616Q 0.29 tolerated(0.05) benign(0.382) TCGA-XK-AAIW-01 3 49928014 49928014 G A MST1R Silent p.Y1238Y 0.23 TCGA-XK-AAIW-01 3 49940296 49940296 G A MST1R Silent p.Y249Y 0.30 TCGA-XK-AAIW-01 3 50151655 50151655 C T RBM5 Nonsense_Mutation p.R604* 0.41 TCGA-XK-AAIW-01 3 50211246 50211246 G A SEMA3F Missense_Mutation p.A45T 0.28 tolerated(0.26) probably_damaging(0.963) TCGA-XK-AAIW-01 3 50222881 50222881 G A SEMA3F Missense_Mutation p.G488R 0.29 deleterious(0) benign(0.344) TCGA-XK-AAIW-01 3 5025136 5025136 C A BHLHE40 Missense_Mutation p.T333N 0.31 deleterious(0.04) possibly_damaging(0.881) TCGA-XK-AAIW-01 3 50324108 50324108 G A LSMEM2 Missense_Mutation p.G59D 0.25 tolerated(0.08) probably_damaging(1) TCGA-XK-AAIW-01 3 50337909 50337909 G A HYAL1 3'UTR 0.53 TCGA-XK-AAIW-01 3 50356445 50356445 G A HYAL2 Missense_Mutation p.A318V 0.30 tolerated(0.57) possibly_damaging(0.835) TCGA-XK-AAIW-01 3 50357818 50357818 G A HYAL2 Missense_Mutation p.P35S 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 50395884 50395884 T C TMEM115 Missense_Mutation p.Y204C 0.30 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 3 50402359 50402359 T C CACNA2D2 Missense_Mutation p.Y1091C 0.30 deleterious(0) possibly_damaging(0.878) TCGA-XK-AAIW-01 3 50404460 50404460 G A CACNA2D2 Missense_Mutation p.R835C 0.32 deleterious(0.01) possibly_damaging(0.857) TCGA-XK-AAIW-01 3 50598395 50598395 C T C3orf18 Missense_Mutation p.A121T 0.47 tolerated(0.27) benign(0.037) TCGA-XK-AAIW-01 3 50609161 50609161 A G HEMK1 Silent p.A83A 0.38 TCGA-XK-AAIW-01 3 51431205 51431205 C T RBM15B Missense_Mutation p.A792V 0.36 tolerated(0.06) possibly_damaging(0.642) TCGA-XK-AAIW-01 3 51456180 51456180 G A VPRBP Silent p.A700A 0.40 TCGA-XK-AAIW-01 3 51747269 51747269 C T GRM2 Missense_Mutation p.R411W 0.28 deleterious(0.01) probably_damaging(0.948) TCGA-XK-AAIW-01 3 51749519 51749519 T C GRM2 Missense_Mutation p.L577P 0.44 deleterious(0) probably_damaging(0.974) TCGA-XK-AAIW-01 3 52011973 52011973 G A ABHD14A-ACY1 Silent p.L52L 0.47 TCGA-XK-AAIW-01 3 52028115 52028115 G A RPL29 Missense_Mutation p.R44C 0.16 tolerated(0.27) benign(0.005) TCGA-XK-AAIW-01 3 52239947 52239947 C T ALAS1 Missense_Mutation p.A298V 0.39 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 3 52239990 52239990 C A ALAS1 Nonsense_Mutation p.C312* 0.42 TCGA-XK-AAIW-01 3 52293788 52293788 C T WDR82 Missense_Mutation p.G215D 0.39 deleterious(0.01) benign(0.291) TCGA-XK-AAIW-01 3 52325023 52325023 C T GLYCTK Missense_Mutation p.A142V 0.38 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 3 52380666 52380666 G A DNAH1 Missense_Mutation p.R612H 0.41 possibly_damaging(0.849) TCGA-XK-AAIW-01 3 52391665 52391665 C T DNAH1 Silent p.D1298D 0.33 TCGA-XK-AAIW-01 3 52422840 52422840 G A DNAH1 Missense_Mutation p.D3128N 0.42 probably_damaging(0.955) TCGA-XK-AAIW-01 3 52426962 52426962 C T DNAH1 Silent p.N3465N 0.11 TCGA-XK-AAIW-01 3 52428607 52428607 T C DNAH1 Missense_Mutation p.S3585P 0.14 benign(0.167) TCGA-XK-AAIW-01 3 52429427 52429427 C T DNAH1 Missense_Mutation p.A3691V 0.21 probably_damaging(0.999) TCGA-XK-AAIW-01 3 52429586 52429586 G A DNAH1 Missense_Mutation p.M3717I 0.24 benign(0.028) TCGA-XK-AAIW-01 3 52437772 52437772 C T BAP1 Silent p.L463L 0.20 TCGA-XK-AAIW-01 3 52455688 52455688 C T PHF7 Missense_Mutation p.H200Y 0.17 tolerated(0.5) probably_damaging(0.993) TCGA-XK-AAIW-01 3 52475658 52475658 G T SEMA3G Missense_Mutation p.A200D 0.56 tolerated(0.2) possibly_damaging(0.799) TCGA-XK-AAIW-01 3 52521840 52521840 C T NISCH Silent p.L778L 0.43 TCGA-XK-AAIW-01 3 52522464 52522464 G A NISCH Missense_Mutation p.V986M 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-XK-AAIW-01 3 52539715 52539715 C A STAB1 Missense_Mutation p.P538H 0.41 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 52540756 52540756 G A STAB1 Missense_Mutation p.V627M 0.35 deleterious(0.02) benign(0.149) TCGA-XK-AAIW-01 3 52544490 52544490 C T STAB1 Silent p.T918T 0.44 TCGA-XK-AAIW-01 3 52552767 52552767 G A STAB1 Missense_Mutation p.R1639H 0.38 tolerated(0.15) benign(0.024) TCGA-XK-AAIW-01 3 52556356 52556356 G A STAB1 Missense_Mutation p.R2159H 0.08 deleterious(0.05) benign(0.057) TCGA-XK-AAIW-01 3 52557342 52557342 C A STAB1 Silent p.G2375G 0.33 TCGA-XK-AAIW-01 3 52557678 52557678 C T STAB1 Missense_Mutation p.T2434I 0.30 deleterious(0.04) benign(0.01) TCGA-XK-AAIW-01 3 52568700 52568700 G A NT5DC2 5'Flank 0.48 TCGA-XK-AAIW-01 3 52668639 52668639 G A PBRM1 Missense_Mutation p.P427L 0.37 deleterious(0) benign(0.013) TCGA-XK-AAIW-01 3 52713679 52713679 C T PBRM1 Missense_Mutation p.G17R 0.19 tolerated(0.12) probably_damaging(0.98) TCGA-XK-AAIW-01 3 52771727 52771727 G T NEK4 Missense_Mutation p.P770T 0.33 tolerated(0.18) benign(0.08) TCGA-XK-AAIW-01 3 52785948 52785948 C A NEK4 Missense_Mutation p.Q456H 0.29 tolerated(0.12) benign(0.013) TCGA-XK-AAIW-01 3 52840398 52840398 C T ITIH3 Missense_Mutation p.R678C 0.49 deleterious(0) benign(0.018) TCGA-XK-AAIW-01 3 52842779 52842779 A G ITIH3 3'UTR 0.58 TCGA-XK-AAIW-01 3 52850920 52850920 C T ITIH4 Silent p.T817T 0.40 TCGA-XK-AAIW-01 3 52883814 52883814 C T TMEM110 Missense_Mutation p.E141K 0.29 deleterious(0.01) possibly_damaging(0.586) TCGA-XK-AAIW-01 3 52954553 52954553 C T SFMBT1 Missense_Mutation p.V458I 0.33 tolerated(0.28) benign(0.356) TCGA-XK-AAIW-01 3 52960107 52960107 G A SFMBT1 Silent p.D357D 0.29 TCGA-XK-AAIW-01 3 53274270 53274270 G A TKT Missense_Mutation p.A145V 0.08 deleterious(0.05) possibly_damaging(0.793) TCGA-XK-AAIW-01 3 53338246 53338246 G A DCP1A Silent p.T195T 0.36 TCGA-XK-AAIW-01 3 53853045 53853045 C T CHDH Missense_Mutation p.G429D 0.31 deleterious(0) benign(0.232) TCGA-XK-AAIW-01 3 53856558 53856558 G A CHDH Missense_Mutation p.A272V 0.41 deleterious(0.05) benign(0.424) TCGA-XK-AAIW-01 3 55038847 55038847 C T CACNA2D3 Silent p.G916G 0.54 TCGA-XK-AAIW-01 3 55504240 55504240 G A WNT5A Silent p.G341G 0.37 TCGA-XK-AAIW-01 3 55922477 55922477 G A ERC2 Missense_Mutation p.A835V 0.50 tolerated(0.16) benign(0.223) TCGA-XK-AAIW-01 3 56647708 56647708 G A CCDC66 Missense_Mutation p.R499H 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 3 56650074 56650074 G A CCDC66 Silent p.V612V 0.39 TCGA-XK-AAIW-01 3 57131715 57131715 G A IL17RD Silent p.S672S 0.53 TCGA-XK-AAIW-01 3 57131981 57131981 A G IL17RD Missense_Mutation p.S584P 0.33 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-XK-AAIW-01 3 57132270 57132270 G A IL17RD Silent p.D487D 0.44 TCGA-XK-AAIW-01 3 57302547 57302547 G T ASB14 3'UTR 0.43 TCGA-XK-AAIW-01 3 58064443 58064443 G A FLNB Splice_Site p.X181_splice 0.43 TCGA-XK-AAIW-01 3 58080667 58080667 G A FLNB Missense_Mutation p.G298R 0.31 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 3 58081884 58081884 A G FLNB Missense_Mutation p.D308G 0.52 deleterious(0) benign(0.054) TCGA-XK-AAIW-01 3 58107209 58107209 G A FLNB Silent p.S1035S 0.35 TCGA-XK-AAIW-01 3 58109158 58109158 C T FLNB Silent p.S1155S 0.35 TCGA-XK-AAIW-01 3 58121794 58121794 G A FLNB Missense_Mutation p.R1618H 0.60 deleterious(0) probably_damaging(0.952) TCGA-XK-AAIW-01 3 58351637 58351637 G A PXK Missense_Mutation p.E47K 0.38 deleterious(0.03) benign(0.196) TCGA-XK-AAIW-01 3 58381463 58381463 A T PXK Missense_Mutation p.T267S 0.44 tolerated(0.42) benign(0.021) TCGA-XK-AAIW-01 3 58508282 58508282 C T ACOX2 Missense_Mutation p.G525R 0.37 tolerated(0.35) probably_damaging(1) TCGA-XK-AAIW-01 3 58510256 58510256 C T ACOX2 Missense_Mutation p.A475T 0.20 tolerated(0.25) benign(0.033) TCGA-XK-AAIW-01 3 58849269 58849269 T C C3orf67 Intron 0.32 TCGA-XK-AAIW-01 3 62253392 62253392 C T PTPRG Silent p.T924T 0.43 TCGA-XK-AAIW-01 3 62385046 62385046 G T CADPS 3'UTR 0.17 TCGA-XK-AAIW-01 3 62385158 62385158 C T CADPS Missense_Mutation p.A1329T 0.29 tolerated(0.1) possibly_damaging(0.483) TCGA-XK-AAIW-01 3 62518602 62518602 G A CADPS Silent p.D745D 0.12 TCGA-XK-AAIW-01 3 63820887 63820887 G A THOC7 Missense_Mutation p.R164W 0.25 deleterious(0) possibly_damaging(0.621) TCGA-XK-AAIW-01 3 63823673 63823673 G A THOC7 Nonsense_Mutation p.R111* 0.39 TCGA-XK-AAIW-01 3 64085073 64085073 C T PRICKLE2 Missense_Mutation p.R730Q 0.21 tolerated(0.21) benign(0.033) TCGA-XK-AAIW-01 3 64085459 64085459 G A PRICKLE2 Silent p.S601S 0.31 TCGA-XK-AAIW-01 3 64133336 64133336 T C PRICKLE2 Missense_Mutation p.H277R 0.41 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 64527080 64527080 G A ADAMTS9 Missense_Mutation p.A1768V 0.42 tolerated(0.06) possibly_damaging(0.819) TCGA-XK-AAIW-01 3 64532491 64532491 G A ADAMTS9 Silent p.P1669P 0.43 TCGA-XK-AAIW-01 3 64617536 64617536 G A ADAMTS9 Silent p.G747G 0.37 TCGA-XK-AAIW-01 3 65342334 65342334 G A MAGI1 Missense_Mutation p.R1370W 0.20 deleterious(0) unknown(0) TCGA-XK-AAIW-01 3 65607655 65607655 G A MAGI1 Missense_Mutation p.A141V 0.41 deleterious(0.01) benign(0.135) TCGA-XK-AAIW-01 3 66431254 66431254 G A LRIG1 Silent p.C934C 0.38 TCGA-XK-AAIW-01 3 66467646 66467646 G A LRIG1 Missense_Mutation p.A137V 0.36 tolerated(0.3) benign(0.002) TCGA-XK-AAIW-01 3 69047213 69047213 C T EOGT Silent p.Q260Q 0.38 TCGA-XK-AAIW-01 3 69056865 69056865 G A EOGT Missense_Mutation p.T140M 0.36 tolerated(0.15) benign(0.006) TCGA-XK-AAIW-01 3 71830692 71830692 T C PROK2 Missense_Mutation p.I50V 0.33 deleterious(0.03) benign(0.423) TCGA-XK-AAIW-01 3 73096418 73096418 G A PPP4R2 Silent p.E66E 0.57 TCGA-XK-AAIW-01 3 73433545 73433545 G A PDZRN3 Silent p.S724S 0.33 TCGA-XK-AAIW-01 3 73433743 73433743 G A PDZRN3 Silent p.S658S 0.34 TCGA-XK-AAIW-01 3 73657797 73657797 C T PDZRN3 Silent p.R254R 0.29 TCGA-XK-AAIW-01 3 74414810 74414810 G A CNTN3 Silent p.A330A 0.33 TCGA-XK-AAIW-01 3 75471166 75471166 C T FAM86DP RNA 0.44 TCGA-XK-AAIW-01 3 75476814 75476814 C T FAM86DP RNA 0.39 TCGA-XK-AAIW-01 3 75481979 75481979 G T RP11-803B1.8 5'Flank 0.34 TCGA-XK-AAIW-01 3 77147399 77147399 G A ROBO2 Missense_Mutation p.R115H 0.42 deleterious(0) unknown(0) TCGA-XK-AAIW-01 3 77526597 77526597 G T ROBO2 Missense_Mutation p.D157Y 0.38 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 3 77614127 77614127 C T ROBO2 Nonsense_Mutation p.Q585* 0.21 TCGA-XK-AAIW-01 3 77617512 77617512 A T ROBO2 Missense_Mutation p.E649V 0.38 deleterious(0) possibly_damaging(0.578) TCGA-XK-AAIW-01 3 77671486 77671486 C T ROBO2 Silent p.A1237A 0.43 TCGA-XK-AAIW-01 3 78987844 78987844 G A ROBO1 Missense_Mutation p.R136W 0.54 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 3 85851323 85851323 C T CADM2 Missense_Mutation p.T65I 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 86996074 86996074 G C VGLL3 3'UTR 0.42 TCGA-XK-AAIW-01 3 87325526 87325526 G A POU1F1 Silent p.H29H 0.30 TCGA-XK-AAIW-01 3 88104943 88104943 G A CGGBP1 Missense_Mutation p.L62F 0.34 deleterious(0.01) benign(0.383) TCGA-XK-AAIW-01 3 88189696 88189696 G T ZNF654 Missense_Mutation p.K412N 0.38 deleterious(0.01) probably_damaging(0.913) TCGA-XK-AAIW-01 3 8981263 8981263 C T RAD18 Missense_Mutation p.E227K 0.13 tolerated(0.05) possibly_damaging(0.509) TCGA-XK-AAIW-01 3 8988943 8988943 C T RAD18 Missense_Mutation p.R76H 0.36 deleterious(0) possibly_damaging(0.604) TCGA-XK-AAIW-01 3 9406772 9406772 C T THUMPD3 Missense_Mutation p.A7V 0.27 tolerated_low_confidence(0.06) benign(0.149) TCGA-XK-AAIW-01 3 9413002 9413002 G A THUMPD3 Missense_Mutation p.V197I 0.37 tolerated(0.35) benign(0.008) TCGA-XK-AAIW-01 3 9476069 9476069 C T SETD5 Missense_Mutation p.R77C 0.28 deleterious(0.05) possibly_damaging(0.517) TCGA-XK-AAIW-01 3 9515129 9515129 C A SETD5 Silent p.S1135S 0.29 TCGA-XK-AAIW-01 3 9543839 9543839 G A LHFPL4 3'UTR 0.33 TCGA-XK-AAIW-01 3 97167521 97167521 C T EPHA6 Missense_Mutation p.A614V 0.33 tolerated(0.53) benign(0.239) TCGA-XK-AAIW-01 3 9739506 9739506 C A MTMR14 Silent p.S575S 0.42 TCGA-XK-AAIW-01 3 97503809 97503809 G T ARL6 Missense_Mutation p.A89S 0.29 deleterious(0.02) probably_damaging(0.939) TCGA-XK-AAIW-01 3 97596502 97596502 C T CRYBG3 Missense_Mutation p.A207V 0.39 tolerated(0.09) benign(0.064) TCGA-XK-AAIW-01 3 9760187 9760187 C T CPNE9 Missense_Mutation p.A381V 0.41 tolerated(0.29) benign(0.004) TCGA-XK-AAIW-01 3 97664085 97664085 C A MINA Missense_Mutation p.E447D 0.30 tolerated(0.11) benign(0.072) TCGA-XK-AAIW-01 3 97677986 97677986 C T MINA Missense_Mutation p.R197H 0.42 deleterious(0.04) benign(0.2) TCGA-XK-AAIW-01 3 9776113 9776113 C T BRPF1 Missense_Mutation p.R97C 0.33 deleterious(0) possibly_damaging(0.897) TCGA-XK-AAIW-01 3 97868711 97868711 G A OR5H14 Missense_Mutation p.G161E 0.29 deleterious(0.01) possibly_damaging(0.595) TCGA-XK-AAIW-01 3 97887994 97887994 G A OR5H15 Missense_Mutation p.A151T 0.28 tolerated(0.13) benign(0.005) TCGA-XK-AAIW-01 3 9796443 9796443 C T OGG1 Silent p.Y207Y 0.33 TCGA-XK-AAIW-01 3 9804696 9804696 C A CAMK1 Missense_Mutation p.G111C 0.48 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 3 98216966 98216966 G A OR5K2 Missense_Mutation p.A148T 0.09 tolerated(0.17) benign(0.074) TCGA-XK-AAIW-01 3 98251277 98251277 G A GPR15 Missense_Mutation p.A134T 0.30 deleterious(0.04) probably_damaging(1) TCGA-XK-AAIW-01 3 9868895 9868895 G A TTLL3 Silent p.T506T 0.15 TCGA-XK-AAIW-01 3 9879810 9879810 G A RPUSD3 Missense_Mutation p.R316W 0.46 tolerated(0.06) benign(0.009) TCGA-XK-AAIW-01 3 99513079 99513079 C T COL8A1 Missense_Mutation p.P112S 0.30 tolerated(0.07) unknown(0) TCGA-XK-AAIW-01 3 99649852 99649852 C A FILIP1L Missense_Mutation p.G5C 0.30 deleterious(0.04) benign(0) TCGA-XK-AAIW-01 4 100128604 100128604 T C ADH6 Silent p.G321G 0.45 TCGA-XK-AAIW-01 4 100208060 100208060 T A ADH1A Missense_Mutation p.E69V 0.42 deleterious(0) probably_damaging(0.941) TCGA-XK-AAIW-01 4 100334311 100334311 C T ADH7 Silent p.T393T 0.24 TCGA-XK-AAIW-01 4 100851701 100851701 C T DNAJB14 Missense_Mutation p.D71N 0.31 tolerated(0.4) benign(0.08) TCGA-XK-AAIW-01 4 101386659 101386659 G T EMCN Missense_Mutation p.D99E 0.45 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 4 1018179 1018179 C A FGFRL1 Missense_Mutation p.Q267K 0.34 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 102001725 102001725 A - PPP3CA Frame_Shift_Del p.S307Qfs*6 0.33 TCGA-XK-AAIW-01 4 103188797 103188797 G A SLC39A8 Silent p.S361S 0.13 TCGA-XK-AAIW-01 4 103498131 103498131 G A NFKB1 Missense_Mutation p.G169E 0.42 deleterious(0.02) benign(0.085) TCGA-XK-AAIW-01 4 103500131 103500131 C T NFKB1 Missense_Mutation p.P222L 0.41 tolerated(0.05) benign(0.133) TCGA-XK-AAIW-01 4 103947622 103947622 G A SLC9B2 Silent p.L507L 0.36 TCGA-XK-AAIW-01 4 103970157 103970157 G A SLC9B2 Silent p.G202G 0.55 TCGA-XK-AAIW-01 4 104030070 104030070 G T CENPE Missense_Mutation p.P2634H 0.37 probably_damaging(0.943) TCGA-XK-AAIW-01 4 10445344 10445344 C T ZNF518B Missense_Mutation p.S870N 0.42 tolerated(0.17) benign(0.007) TCGA-XK-AAIW-01 4 10492053 10492053 G A CLNK 3'UTR 0.27 TCGA-XK-AAIW-01 4 10515166 10515166 G A CLNK Silent p.S276S 0.55 TCGA-XK-AAIW-01 4 106156139 106156139 C T TET2 Missense_Mutation p.A347V 0.36 tolerated(1) benign(0) TCGA-XK-AAIW-01 4 106601044 106601044 G A ARHGEF38 3'UTR 0.47 TCGA-XK-AAIW-01 4 106859520 106859520 C T NPNT Missense_Mutation p.R180W 0.31 deleterious(0) possibly_damaging(0.816) TCGA-XK-AAIW-01 4 106888398 106888398 C T NPNT Missense_Mutation p.R497C 0.20 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 107157635 107157635 G T TBCK Missense_Mutation p.S421Y 0.31 tolerated(0.06) benign(0.179) TCGA-XK-AAIW-01 4 108866737 108866737 A G CYP2U1 Missense_Mutation p.M368V 0.18 deleterious(0) possibly_damaging(0.803) TCGA-XK-AAIW-01 4 108954379 108954379 G A HADH Missense_Mutation p.G270S 0.45 deleterious(0.04) possibly_damaging(0.839) TCGA-XK-AAIW-01 4 109543161 109543161 G A RPL34 Missense_Mutation p.A16T 0.18 tolerated(0.36) benign(0.103) TCGA-XK-AAIW-01 4 110223177 110223177 G A COL25A1 5'UTR 0.50 TCGA-XK-AAIW-01 4 110394176 110394176 C A SEC24B Silent p.S298S 0.43 TCGA-XK-AAIW-01 4 110448484 110448484 G A SEC24B Missense_Mutation p.R991Q 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 110610371 110610371 A G CASP6 3'UTR 0.19 TCGA-XK-AAIW-01 4 1107206 1107206 C A RNF212 Missense_Mutation p.R16M 0.58 tolerated(0.05) probably_damaging(0.93) TCGA-XK-AAIW-01 4 110758737 110758737 G A RRH Nonsense_Mutation p.W232* 0.25 TCGA-XK-AAIW-01 4 110789072 110789072 A G LRIT3 Missense_Mutation p.R289G 0.40 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 4 110897213 110897213 T A EGF Missense_Mutation p.S625R 0.53 tolerated(0.06) possibly_damaging(0.903) TCGA-XK-AAIW-01 4 110902097 110902097 G A EGF Silent p.T779T 0.43 TCGA-XK-AAIW-01 4 110972738 110972738 G A ELOVL6 Missense_Mutation p.A185V 0.45 deleterious(0) probably_damaging(0.958) TCGA-XK-AAIW-01 4 111441445 111441445 C T ENPEP Silent p.N550N 0.41 TCGA-XK-AAIW-01 4 111539338 111539338 C T PITX2 Silent p.V306V 0.37 TCGA-XK-AAIW-01 4 111542460 111542460 G A PITX2 Missense_Mutation p.R91W 0.43 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 4 111553615 111553615 T C PITX2 Missense_Mutation p.E23G 0.34 tolerated_low_confidence(0.26) benign(0.002) TCGA-XK-AAIW-01 4 113184195 113184195 G A AP1AR Missense_Mutation p.A112T 0.40 deleterious(0.02) benign(0.012) TCGA-XK-AAIW-01 4 113189305 113189305 A C AP1AR Missense_Mutation p.N217H 0.38 deleterious(0.02) benign(0.011) TCGA-XK-AAIW-01 4 113350345 113350345 C T ALPK1 Missense_Mutation p.A279V 0.38 deleterious(0.02) probably_damaging(0.963) TCGA-XK-AAIW-01 4 11401264 11401264 C T HS3ST1 Silent p.A122A 0.41 TCGA-XK-AAIW-01 4 114177015 114177015 C T ANK2 Missense_Mutation p.A372V 0.38 probably_damaging(0.99) TCGA-XK-AAIW-01 4 114177072 114177072 C T ANK2 Missense_Mutation p.P391L 0.30 possibly_damaging(0.825) TCGA-XK-AAIW-01 4 114238872 114238872 C A ANK2 Silent p.S901S 0.38 TCGA-XK-AAIW-01 4 114275899 114275899 C T ANK2 Missense_Mutation p.A2042V 0.31 benign(0.001) TCGA-XK-AAIW-01 4 114276470 114276470 G A ANK2 Silent p.K2232K 0.11 TCGA-XK-AAIW-01 4 114277565 114277565 G A ANK2 Missense_Mutation p.M2597I 0.50 benign(0.087) TCGA-XK-AAIW-01 4 114278013 114278013 C A ANK2 Missense_Mutation p.R2747S 0.27 benign(0.001) TCGA-XK-AAIW-01 4 114278439 114278439 G A ANK2 Missense_Mutation p.D2889N 0.42 benign(0.041) TCGA-XK-AAIW-01 4 114424106 114424106 G A CAMK2D Intron 0.30 TCGA-XK-AAIW-01 4 114530360 114530360 G A CAMK2D Nonsense_Mutation p.R75* 0.30 TCGA-XK-AAIW-01 4 115997287 115997287 C T NDST4 Silent p.R302R 0.33 TCGA-XK-AAIW-01 4 115997414 115997414 A G NDST4 Missense_Mutation p.L260P 0.34 tolerated(0.16) probably_damaging(0.996) TCGA-XK-AAIW-01 4 119204124 119204124 C A PRSS12 Missense_Mutation p.A728S 0.40 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 4 119234369 119234369 G A PRSS12 Silent p.H492H 0.48 TCGA-XK-AAIW-01 4 120442131 120442131 C T PDE5A Missense_Mutation p.A622T 0.08 tolerated(0.15) possibly_damaging(0.772) TCGA-XK-AAIW-01 4 121774625 121774625 C T PRDM5 Missense_Mutation p.R83H 0.40 deleterious(0.05) probably_damaging(0.912) TCGA-XK-AAIW-01 4 121958203 121958203 G A NDNF Missense_Mutation p.T308M 0.16 deleterious(0.04) possibly_damaging(0.527) TCGA-XK-AAIW-01 4 122599624 122599624 G A ANXA5 Silent p.D140D 0.16 TCGA-XK-AAIW-01 4 122722479 122722479 T C EXOSC9 5'UTR 0.33 TCGA-XK-AAIW-01 4 122723045 122723045 G A EXOSC9 Missense_Mutation p.G44R 0.41 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 4 122825550 122825550 T C TRPC3 Missense_Mutation p.Y727C 0.22 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 122854099 122854099 C T TRPC3 Missense_Mutation p.R105H 0.35 tolerated_low_confidence(0.18) benign(0.005) TCGA-XK-AAIW-01 4 123122202 123122202 G A KIAA1109 Missense_Mutation p.M473I 0.46 probably_damaging(0.956) TCGA-XK-AAIW-01 4 123227142 123227142 T C KIAA1109 Silent p.A3261A 0.18 TCGA-XK-AAIW-01 4 123246434 123246434 G A KIAA1109 Missense_Mutation p.A3652T 0.16 possibly_damaging(0.624) TCGA-XK-AAIW-01 4 123534004 123534004 A G IL21 Splice_Site p.X146_splice 0.24 TCGA-XK-AAIW-01 4 123664110 123664110 C T BBS12 Nonsense_Mutation p.R355* 0.45 TCGA-XK-AAIW-01 4 123664604 123664604 C T BBS12 Silent p.F519F 0.25 TCGA-XK-AAIW-01 4 123665162 123665162 G A BBS12 Silent p.T705T 0.41 TCGA-XK-AAIW-01 4 123818906 123818906 C T FGF2 3'UTR 0.60 TCGA-XK-AAIW-01 4 123850197 123850197 G A SPATA5 Silent p.V97V 0.45 TCGA-XK-AAIW-01 4 126241422 126241422 C T FAT4 Nonsense_Mutation p.Q1286* 0.32 TCGA-XK-AAIW-01 4 126241756 126241756 G A FAT4 Missense_Mutation p.R1397K 0.35 possibly_damaging(0.507) TCGA-XK-AAIW-01 4 126337678 126337678 G A FAT4 Missense_Mutation p.A2307T 0.11 possibly_damaging(0.7) TCGA-XK-AAIW-01 4 126355544 126355544 C T FAT4 Missense_Mutation p.A2388V 0.45 possibly_damaging(0.595) TCGA-XK-AAIW-01 4 126367515 126367515 G A FAT4 Missense_Mutation p.A2421T 0.41 possibly_damaging(0.698) TCGA-XK-AAIW-01 4 126369942 126369942 G T FAT4 Nonsense_Mutation p.G2591* 0.12 TCGA-XK-AAIW-01 4 126371285 126371285 G A FAT4 Silent p.T3038T 0.44 TCGA-XK-AAIW-01 4 126371551 126371551 G A FAT4 Missense_Mutation p.S3127N 0.39 benign(0.006) TCGA-XK-AAIW-01 4 126372317 126372317 A G FAT4 Silent p.R3382R 0.40 TCGA-XK-AAIW-01 4 128627966 128627966 C T INTU Missense_Mutation p.R705C 0.41 deleterious(0.04) benign(0.16) TCGA-XK-AAIW-01 4 128732695 128732695 C T HSPA4L Silent p.S494S 0.35 TCGA-XK-AAIW-01 4 128748471 128748471 G A HSPA4L Silent p.Q686Q 0.34 TCGA-XK-AAIW-01 4 128807514 128807514 G A PLK4 Missense_Mutation p.S330N 0.38 tolerated(1) benign(0) TCGA-XK-AAIW-01 4 128812837 128812837 G A PLK4 Splice_Site p.X680_splice 0.35 TCGA-XK-AAIW-01 4 129783027 129783027 C G JADE1 Missense_Mutation p.Q384E 0.08 tolerated(0.81) benign(0.009) TCGA-XK-AAIW-01 4 129793452 129793452 G A JADE1 3'UTR 0.29 TCGA-XK-AAIW-01 4 129965200 129965200 C T SCLT1 Missense_Mutation p.V37I 0.34 tolerated(0.32) benign(0.006) TCGA-XK-AAIW-01 4 1332975 1332975 G A MAEA 3'UTR 0.31 TCGA-XK-AAIW-01 4 134073055 134073055 G A PCDH10 Missense_Mutation p.R587H 0.42 tolerated(0.13) possibly_damaging(0.639) TCGA-XK-AAIW-01 4 1348948 1348948 C T UVSSA Missense_Mutation p.A364V 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 4 13615222 13615222 G A BOD1L1 Missense_Mutation p.T413I 0.46 probably_damaging(0.999) TCGA-XK-AAIW-01 4 138442183 138442183 C T PCDH18 Silent p.%3D 0.34 TCGA-XK-AAIW-01 4 1389230 1389230 G A CRIPAK Missense_Mutation p.A311T 0.43 tolerated(0.5) probably_damaging(0.982) TCGA-XK-AAIW-01 4 1389587 1389587 C T CRIPAK Missense_Mutation p.R430C 0.34 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-XK-AAIW-01 4 139093059 139093059 C T SLC7A11 3'UTR 0.36 TCGA-XK-AAIW-01 4 139106350 139106350 G A SLC7A11 Silent p.G280G 0.33 TCGA-XK-AAIW-01 4 140264115 140264115 G A NAA15 Splice_Site p.X179_splice 0.42 TCGA-XK-AAIW-01 4 140306049 140306049 G A NAA15 Missense_Mutation p.R740H 0.47 tolerated(0.06) possibly_damaging(0.701) TCGA-XK-AAIW-01 4 140439119 140439119 G T SETD7 Silent p.P280P 0.16 TCGA-XK-AAIW-01 4 141471406 141471406 C T ELMOD2 Silent p.D253D 0.30 TCGA-XK-AAIW-01 4 141580778 141580778 G A TBC1D9 Missense_Mutation p.R629C 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 142950019 142950019 C A INPP4B Missense_Mutation p.K897N 0.16 deleterious(0) possibly_damaging(0.794) TCGA-XK-AAIW-01 4 142950057 142950057 G A INPP4B Missense_Mutation p.R885C 0.31 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 143003203 143003203 C T INPP4B Missense_Mutation p.A875T 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 4 144136036 144136036 C T USP38 Silent p.D969D 0.47 TCGA-XK-AAIW-01 4 144359424 144359424 C A GAB1 Missense_Mutation p.T289N 0.35 deleterious(0) possibly_damaging(0.84) TCGA-XK-AAIW-01 4 145659160 145659160 C A HHIP 3'UTR 0.39 TCGA-XK-AAIW-01 4 147824693 147824693 C T TTC29 Intron 0.24 TCGA-XK-AAIW-01 4 148453683 148453683 C T EDNRA Missense_Mutation p.R192C 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 148555573 148555573 C T TMEM184C Silent p.S435S 0.43 TCGA-XK-AAIW-01 4 148876466 148876466 G T ARHGAP10 Splice_Site p.X464_splice 0.30 TCGA-XK-AAIW-01 4 149356756 149356756 C T NR3C2 Silent p.S419S 0.30 TCGA-XK-AAIW-01 4 149356823 149356823 T C NR3C2 Missense_Mutation p.Y397C 0.36 deleterious_low_confidence(0) benign(0.326) TCGA-XK-AAIW-01 4 151682934 151682934 C A LRBA Splice_Site p.X1882_splice 0.40 TCGA-XK-AAIW-01 4 151749738 151749738 C T LRBA Missense_Mutation p.A1589T 0.12 tolerated(0.77) benign(0.021) TCGA-XK-AAIW-01 4 151829826 151829826 C T LRBA Missense_Mutation p.A449T 0.39 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 4 152058907 152058907 G A SH3D19 Missense_Mutation p.P545S 0.26 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 4 152203391 152203391 G A PRSS48 Missense_Mutation p.V103I 0.37 tolerated(1) benign(0.006) TCGA-XK-AAIW-01 4 153691371 153691371 G A TIGD4 Silent p.S262S 0.36 TCGA-XK-AAIW-01 4 153864466 153864466 A G FHDC1 Missense_Mutation p.N86S 0.34 deleterious(0.01) possibly_damaging(0.469) TCGA-XK-AAIW-01 4 153875374 153875374 C A FHDC1 Missense_Mutation p.P189H 0.53 deleterious(0.02) probably_damaging(0.99) TCGA-XK-AAIW-01 4 154215596 154215596 C T TRIM2 Silent p.L249L 0.31 TCGA-XK-AAIW-01 4 154216729 154216729 G A TRIM2 Missense_Mutation p.V351I 0.52 tolerated(0.24) benign(0.106) TCGA-XK-AAIW-01 4 154216756 154216756 G A TRIM2 Missense_Mutation p.E360K 0.46 deleterious(0.02) possibly_damaging(0.871) TCGA-XK-AAIW-01 4 154517484 154517484 C T KIAA0922 Silent p.G690G 0.41 TCGA-XK-AAIW-01 4 155157215 155157215 G T DCHS2 Silent p.S2408S 0.41 TCGA-XK-AAIW-01 4 155254288 155254288 G A DCHS2 Silent p.G525G 0.37 TCGA-XK-AAIW-01 4 155278424 155278424 G C DCHS2 Missense_Mutation p.D249E 0.35 tolerated(0.58) benign(0.001) TCGA-XK-AAIW-01 4 155665867 155665867 C T LRAT Missense_Mutation p.S130F 0.19 tolerated(0.7) benign(0.385) TCGA-XK-AAIW-01 4 15602983 15602983 C T CC2D2A Missense_Mutation p.H1600Y 0.13 deleterious(0) possibly_damaging(0.537) TCGA-XK-AAIW-01 4 157771538 157771538 A G PDGFC Missense_Mutation p.I50T 0.33 tolerated(0.09) possibly_damaging(0.608) TCGA-XK-AAIW-01 4 159154132 159154132 C A TMEM144 Missense_Mutation p.H165N 0.40 tolerated(0.5) benign(0.005) TCGA-XK-AAIW-01 4 159782886 159782886 C T FNIP2 Silent p.L475L 0.33 TCGA-XK-AAIW-01 4 159790204 159790204 G A FNIP2 Missense_Mutation p.A806T 0.45 tolerated(0.71) benign(0.003) TCGA-XK-AAIW-01 4 160277143 160277143 G A RAPGEF2 Missense_Mutation p.R1436Q 0.38 deleterious_low_confidence(0.02) benign(0.281) TCGA-XK-AAIW-01 4 164247095 164247095 C T NPY1R Silent p.S204S 0.18 TCGA-XK-AAIW-01 4 164247165 164247165 T C NPY1R Missense_Mutation p.D181G 0.30 tolerated(0.09) possibly_damaging(0.462) TCGA-XK-AAIW-01 4 164393426 164393426 T C TKTL2 Silent p.P487P 0.40 TCGA-XK-AAIW-01 4 164393760 164393760 A G TKTL2 Missense_Mutation p.V376A 0.39 tolerated(0.46) probably_damaging(0.998) TCGA-XK-AAIW-01 4 164394675 164394675 C T TKTL2 Missense_Mutation p.R71Q 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 4 166935682 166935682 G A TLL1 Missense_Mutation p.A338T 0.38 tolerated(0.05) benign(0.032) TCGA-XK-AAIW-01 4 166996046 166996046 T C TLL1 Silent p.S735S 0.20 TCGA-XK-AAIW-01 4 167833895 167833895 C A SPOCK3 Splice_Site p.X120_splice 0.34 TCGA-XK-AAIW-01 4 169209425 169209425 A T DDX60 Silent p.T361T 0.16 TCGA-XK-AAIW-01 4 169229212 169229212 C T DDX60 Missense_Mutation p.R70H 0.38 tolerated(0.24) benign(0.022) TCGA-XK-AAIW-01 4 169433371 169433371 C T PALLD Missense_Mutation p.A239V 0.33 tolerated(0.12) benign(0.005) TCGA-XK-AAIW-01 4 169611766 169611766 A G PALLD Missense_Mutation p.T450A 0.38 tolerated(0.45) benign(0.014) TCGA-XK-AAIW-01 4 1696566 1696566 G A SLBP Missense_Mutation p.H211Y 0.35 tolerated(0.68) benign(0.003) TCGA-XK-AAIW-01 4 170321765 170321765 G A NEK1 Silent p.C1207C 0.39 TCGA-XK-AAIW-01 4 170459007 170459007 G A NEK1 Nonsense_Mutation p.R540* 0.41 TCGA-XK-AAIW-01 4 1730475 1730475 C T TACC3 Missense_Mutation p.A449V 0.46 tolerated(0.26) benign(0.024) TCGA-XK-AAIW-01 4 173873302 173873302 C T GALNTL6 Missense_Mutation p.R422C 0.40 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 4 1739054 1739054 C A TACC3 Missense_Mutation p.P612H 0.50 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 4 173961285 173961285 G T GALNTL6 3'UTR 0.20 TCGA-XK-AAIW-01 4 17516912 17516912 C T CLRN2 Missense_Mutation p.A8V 0.35 tolerated(0.92) benign(0) TCGA-XK-AAIW-01 4 175896956 175896956 C T ADAM29 Missense_Mutation p.P94S 0.47 deleterious(0.02) probably_damaging(0.994) TCGA-XK-AAIW-01 4 175897510 175897510 G A ADAM29 Silent p.T278T 0.14 TCGA-XK-AAIW-01 4 177069450 177069450 G A WDR17 Missense_Mutation p.V645M 0.38 deleterious(0.01) benign(0.261) TCGA-XK-AAIW-01 4 177136781 177136781 C T ASB5 Silent p.T320T 0.32 TCGA-XK-AAIW-01 4 17838849 17838849 G T NCAPG Missense_Mutation p.S726I 0.10 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 1807829 1807829 G A FGFR3 Missense_Mutation p.V632M 0.41 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 4 1818468 1818468 G A LETM1 Silent p.N639N 0.10 TCGA-XK-AAIW-01 4 1834632 1834632 G A LETM1 Missense_Mutation p.R307C 0.35 deleterious(0) benign(0.427) TCGA-XK-AAIW-01 4 183676028 183676028 C A TENM3 Missense_Mutation p.P1503H 0.48 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 4 183714557 183714557 G A TENM3 Silent p.Q2244Q 0.46 TCGA-XK-AAIW-01 4 184931470 184931470 G A STOX2 Silent p.S493S 0.80 TCGA-XK-AAIW-01 4 185684393 185684393 C T ACSL1 Silent p.P483P 0.33 TCGA-XK-AAIW-01 4 185687880 185687880 G A ACSL1 Nonsense_Mutation p.R387* 0.23 TCGA-XK-AAIW-01 4 186097206 186097206 C T KIAA1430 Splice_Site p.X352_splice 0.53 TCGA-XK-AAIW-01 4 186188122 186188122 G A SNX25 Splice_Site p.X138_splice 0.25 TCGA-XK-AAIW-01 4 186329445 186329445 T C UFSP2 Missense_Mutation p.T326A 0.17 deleterious(0.02) possibly_damaging(0.877) TCGA-XK-AAIW-01 4 186536198 186536198 C T SORBS2 Splice_Site p.X1018_splice 0.22 TCGA-XK-AAIW-01 4 187130097 187130097 G A CYP4V2 Missense_Mutation p.R390H 0.13 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 187173195 187173195 G A KLKB1 Missense_Mutation p.R390H 0.10 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 187521066 187521066 G A FAT1 Missense_Mutation p.P4030L 0.52 benign(0.008) TCGA-XK-AAIW-01 4 187522466 187522466 G A FAT1 Missense_Mutation p.A3866V 0.28 probably_damaging(0.997) TCGA-XK-AAIW-01 4 187531072 187531072 G A FAT1 Silent p.D3317D 0.52 TCGA-XK-AAIW-01 4 187629095 187629095 C T FAT1 Silent p.S629S 0.52 TCGA-XK-AAIW-01 4 188924725 188924725 G A ZFP42 Missense_Mutation p.R255H 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 4 189020257 189020257 G A TRIML2 Missense_Mutation p.R135C 0.44 tolerated(0.18) benign(0) TCGA-XK-AAIW-01 4 189060814 189060814 C A TRIML1 Missense_Mutation p.S34R 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 1957028 1957028 G A WHSC1 Missense_Mutation p.A827T 0.38 tolerated(0.21) benign(0.003) TCGA-XK-AAIW-01 4 1957835 1957835 C T WHSC1 Missense_Mutation p.A934V 0.45 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 4 1961236 1961236 G A WHSC1 Silent p.A1008A 0.46 TCGA-XK-AAIW-01 4 1976605 1976605 G A WHSC1 Missense_Mutation p.A1130T 0.07 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 1976680 1976680 G A WHSC1 Missense_Mutation p.V1155M 0.16 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 1985711 1985711 G A NELFA Missense_Mutation p.A400V 0.53 tolerated(0.32) benign(0.008) TCGA-XK-AAIW-01 4 20255349 20255349 G A SLIT2 5'UTR 0.31 TCGA-XK-AAIW-01 4 20555519 20555519 C T SLIT2 Missense_Mutation p.R885C 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 20598243 20598243 G A SLIT2 Missense_Mutation p.A1176T 0.49 tolerated(0.43) benign(0.002) TCGA-XK-AAIW-01 4 2065672 2065672 G A NAT8L Missense_Mutation p.A243T 0.39 deleterious(0) benign(0.083) TCGA-XK-AAIW-01 4 20715073 20715073 G A PACRGL Missense_Mutation p.V174M 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-XK-AAIW-01 4 2240481 2240481 T A HAUS3 Missense_Mutation p.D400V 0.48 deleterious(0.02) benign(0.36) TCGA-XK-AAIW-01 4 2242668 2242668 A G HAUS3 Silent p.S2S 0.45 TCGA-XK-AAIW-01 4 22737812 22737812 A G GBA3 Silent p.T89T 0.52 TCGA-XK-AAIW-01 4 2306040 2306040 G A ZFYVE28 Missense_Mutation p.A676V 0.41 tolerated(0.28) benign(0.001) TCGA-XK-AAIW-01 4 2306602 2306602 C A ZFYVE28 Missense_Mutation p.D489Y 0.48 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-XK-AAIW-01 4 2307027 2307027 C T ZFYVE28 Missense_Mutation p.R347H 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.775) TCGA-XK-AAIW-01 4 23803961 23803961 C T PPARGC1A Missense_Mutation p.R676H 0.38 tolerated(0.17) unknown(0) TCGA-XK-AAIW-01 4 23830129 23830129 G A PPARGC1A Silent p.N217N 0.16 TCGA-XK-AAIW-01 4 24544563 24544563 C T DHX15 Silent p.K445K 0.33 TCGA-XK-AAIW-01 4 24578054 24578054 C A DHX15 Missense_Mutation p.G107C 0.37 tolerated(0.07) benign(0.088) TCGA-XK-AAIW-01 4 247864 247864 G A ZNF876P RNA 0.44 TCGA-XK-AAIW-01 4 248113 248113 G A ZNF876P RNA 0.27 TCGA-XK-AAIW-01 4 25363868 25363868 G A ZCCHC4 Missense_Mutation p.R385Q 0.35 deleterious(0.02) possibly_damaging(0.602) TCGA-XK-AAIW-01 4 25382011 25382011 C T ANAPC4 Silent p.L49L 0.33 TCGA-XK-AAIW-01 4 25665888 25665888 C T SLC34A2 Silent p.L105L 0.41 TCGA-XK-AAIW-01 4 25823678 25823678 G A SEL1L3 Silent p.G410G 0.49 TCGA-XK-AAIW-01 4 26407825 26407825 C T RBPJ Nonsense_Mutation p.R43* 0.35 TCGA-XK-AAIW-01 4 26638843 26638843 A - TBC1D19 Frame_Shift_Del p.R104Efs*3 0.26 TCGA-XK-AAIW-01 4 2691278 2691278 G A FAM193A Missense_Mutation p.V502I 0.43 deleterious(0.01) benign(0.145) TCGA-XK-AAIW-01 4 27019579 27019579 C T STIM2 Missense_Mutation p.A587V 0.41 tolerated_low_confidence(0.42) probably_damaging(0.993) TCGA-XK-AAIW-01 4 2749522 2749522 G T TNIP2 Missense_Mutation p.L143M 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 2826453 2826453 G A SH3BP2 Missense_Mutation p.R175H 0.44 deleterious(0) possibly_damaging(0.863) TCGA-XK-AAIW-01 4 2831831 2831831 G A SH3BP2 Missense_Mutation p.A457T 0.25 tolerated_low_confidence(0.38) benign(0.003) TCGA-XK-AAIW-01 4 2940534 2940534 C T NOP14 3'UTR 0.33 TCGA-XK-AAIW-01 4 30724564 30724564 C T PCDH7 Missense_Mutation p.A507V 0.41 deleterious(0) probably_damaging(0.981) TCGA-XK-AAIW-01 4 30725231 30725231 G A PCDH7 Silent p.S729S 0.43 TCGA-XK-AAIW-01 4 3134559 3134559 C T HTT Missense_Mutation p.A805V 0.34 benign(0.001) TCGA-XK-AAIW-01 4 3210609 3210609 G A HTT Missense_Mutation p.V2088M 0.17 benign(0.004) TCGA-XK-AAIW-01 4 3430395 3430395 T C RGS12 Silent p.I1174I 0.41 TCGA-XK-AAIW-01 4 367133 367133 C T ZNF141 Nonsense_Mutation p.R303* 0.32 TCGA-XK-AAIW-01 4 37592465 37592465 C T C4orf19 Missense_Mutation p.A263V 0.38 tolerated(0.21) benign(0.006) TCGA-XK-AAIW-01 4 3768676 3768676 G A ADRA2C Missense_Mutation p.A115T 0.15 deleterious(0) possibly_damaging(0.565) TCGA-XK-AAIW-01 4 3769056 3769056 G A ADRA2C Silent p.T241T 0.33 TCGA-XK-AAIW-01 4 38022223 38022223 C T TBC1D1 Silent p.H328H 0.43 TCGA-XK-AAIW-01 4 38798902 38798902 C T TLR1 Silent p.R517R 0.39 TCGA-XK-AAIW-01 4 38830345 38830345 G T TLR6 Silent p.T250T 0.44 TCGA-XK-AAIW-01 4 39304196 39304196 G A RFC1 Missense_Mutation p.A788V 0.46 deleterious(0.01) probably_damaging(0.973) TCGA-XK-AAIW-01 4 39318570 39318570 C T RFC1 Missense_Mutation p.G390S 0.41 tolerated(0.09) probably_damaging(0.909) TCGA-XK-AAIW-01 4 39344069 39344069 G A RFC1 Missense_Mutation p.T76M 0.37 tolerated_low_confidence(0.25) benign(0.067) TCGA-XK-AAIW-01 4 39436200 39436200 C T KLB Missense_Mutation p.A399V 0.36 tolerated(0.8) benign(0.006) TCGA-XK-AAIW-01 4 40108585 40108585 G A N4BP2 Missense_Mutation p.G480E 0.30 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 40123912 40123912 C A N4BP2 Missense_Mutation p.P1394H 0.36 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 4 40339294 40339294 C T CHRNA9 Missense_Mutation p.T93M 0.42 deleterious(0.03) possibly_damaging(0.667) TCGA-XK-AAIW-01 4 41016017 41016017 G A APBB2 Missense_Mutation p.P140S 0.45 tolerated(0.73) benign(0.027) TCGA-XK-AAIW-01 4 41748140 41748140 G A PHOX2B Missense_Mutation p.A210V 0.37 deleterious_low_confidence(0.03) unknown(0) TCGA-XK-AAIW-01 4 41984291 41984291 C T DCAF4L1 Missense_Mutation p.A161V 0.36 deleterious(0.01) possibly_damaging(0.848) TCGA-XK-AAIW-01 4 42119708 42119708 G A BEND4 Missense_Mutation p.P478S 0.30 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-XK-AAIW-01 4 4228245 4228245 G A OTOP1 Missense_Mutation p.A116V 0.52 tolerated(0.17) benign(0.015) TCGA-XK-AAIW-01 4 42403327 42403327 G A SHISA3 Silent p.P192P 0.43 TCGA-XK-AAIW-01 4 42596331 42596331 C T ATP8A1 Intron 0.30 TCGA-XK-AAIW-01 4 4285407 4285407 A G LYAR Silent p.H21H 0.43 TCGA-XK-AAIW-01 4 4411342 4411342 G A NSG1 Missense_Mutation p.V97I 0.23 tolerated(0.33) benign(0.009) TCGA-XK-AAIW-01 4 46067556 46067556 G A GABRG1 Missense_Mutation p.R123C 0.34 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 4 47428008 47428008 C T GABRB1 Silent p.V466V 0.38 TCGA-XK-AAIW-01 4 47428113 47428113 C A GABRB1 3'UTR 0.29 TCGA-XK-AAIW-01 4 47455227 47455227 G A COMMD8 Missense_Mutation p.A127V 0.46 tolerated(0.15) benign(0.309) TCGA-XK-AAIW-01 4 48037777 48037777 C T NIPAL1 Missense_Mutation p.P274L 0.37 deleterious(0.03) probably_damaging(1) TCGA-XK-AAIW-01 4 48147115 48147115 C T TEC Missense_Mutation p.S484N 0.42 tolerated(0.29) benign(0.003) TCGA-XK-AAIW-01 4 48422198 48422198 C T SLAIN2 Nonsense_Mutation p.Q473* 0.41 TCGA-XK-AAIW-01 4 48514664 48514664 G A FRYL Missense_Mutation p.T2660M 0.37 tolerated_low_confidence(0.19) possibly_damaging(0.587) TCGA-XK-AAIW-01 4 48567655 48567655 T C FRYL Missense_Mutation p.M1075V 0.19 tolerated(0.5) possibly_damaging(0.62) TCGA-XK-AAIW-01 4 48583507 48583507 G A FRYL Missense_Mutation p.A701V 0.39 tolerated(0.42) benign(0.339) TCGA-XK-AAIW-01 4 48862881 48862881 C G OCIAD1 3'UTR 0.52 TCGA-XK-AAIW-01 4 49063956 49063956 T C CWH43 3'UTR 0.32 TCGA-XK-AAIW-01 4 5016936 5016936 C T CYTL1 Missense_Mutation p.C118Y 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 5018575 5018575 C T CYTL1 Silent p.S105S 0.28 TCGA-XK-AAIW-01 4 524247 524247 G A PIGG Missense_Mutation p.V762I 0.41 deleterious(0.01) probably_damaging(0.929) TCGA-XK-AAIW-01 4 527766 527766 C T PIGG Missense_Mutation p.R911C 0.38 deleterious(0.01) benign(0.205) TCGA-XK-AAIW-01 4 52861265 52861265 G A LRRC66 Silent p.S641S 0.43 TCGA-XK-AAIW-01 4 52861456 52861456 G A LRRC66 Missense_Mutation p.P578S 0.31 tolerated(0.38) benign(0.245) TCGA-XK-AAIW-01 4 52926984 52926984 G A SPATA18 Missense_Mutation p.R77H 0.46 deleterious(0.01) probably_damaging(0.984) TCGA-XK-AAIW-01 4 54256787 54256787 G A FIP1L1 Missense_Mutation p.R166H 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 5448495 5448495 C T STK32B Missense_Mutation p.R220W 0.33 deleterious(0) probably_damaging(0.956) TCGA-XK-AAIW-01 4 54915146 54915146 C T CHIC2 Nonsense_Mutation p.W102* 0.50 TCGA-XK-AAIW-01 4 55602953 55602953 G A KIT Missense_Mutation p.R888Q 0.25 tolerated(0.11) probably_damaging(1) TCGA-XK-AAIW-01 4 55604673 55604673 G A KIT Missense_Mutation p.G961S 0.41 tolerated(0.27) probably_damaging(1) TCGA-XK-AAIW-01 4 5564752 5564752 G A EVC2 Silent p.G1250G 0.21 TCGA-XK-AAIW-01 4 55955037 55955037 G A KDR Nonsense_Mutation p.Q1170* 0.22 TCGA-XK-AAIW-01 4 55964923 55964923 C T KDR Missense_Mutation p.A772T 0.36 tolerated(0.09) possibly_damaging(0.65) TCGA-XK-AAIW-01 4 55979611 55979612 - T KDR Frame_Shift_Ins p.T279Nfs*6 0.29 TCGA-XK-AAIW-01 4 55987346 55987346 C T KDR Missense_Mutation p.V27I 0.25 tolerated(0.6) benign(0.003) TCGA-XK-AAIW-01 4 56230449 56230449 C T SRD5A3 Intron 0.27 TCGA-XK-AAIW-01 4 56284135 56284135 G A TMEM165 Missense_Mutation p.V259I 0.43 tolerated(1) benign(0.023) TCGA-XK-AAIW-01 4 56336952 56336952 C T CLOCK Missense_Mutation p.A124T 0.28 deleterious(0.04) possibly_damaging(0.861) TCGA-XK-AAIW-01 4 56724596 56724597 - T EXOC1 Frame_Shift_Ins p.L38Ffs*8 0.29 TCGA-XK-AAIW-01 4 56890766 56890766 G A CEP135 Silent p.V1140V 0.41 TCGA-XK-AAIW-01 4 57796717 57796717 G T REST Missense_Mutation p.V565L 0.50 tolerated(0.25) benign(0.139) TCGA-XK-AAIW-01 4 57832797 57832797 T C NOA1 Missense_Mutation p.T585A 0.46 tolerated(0.43) benign(0.005) TCGA-XK-AAIW-01 4 57843409 57843409 G A NOA1 Nonsense_Mutation p.Q115* 0.64 TCGA-XK-AAIW-01 4 57860573 57860573 C T POLR2B Nonsense_Mutation p.R83* 0.42 TCGA-XK-AAIW-01 4 5862915 5862915 C T CRMP1 Missense_Mutation p.V165I 0.39 tolerated(0.41) benign(0.01) TCGA-XK-AAIW-01 4 6114627 6114627 C T JAKMIP1 5'UTR 0.41 TCGA-XK-AAIW-01 4 619375 619375 C T PDE6B 5'Flank 0.41 TCGA-XK-AAIW-01 4 628555 628555 C T PDE6B Silent p.V186V 0.38 TCGA-XK-AAIW-01 4 6302972 6302972 C T WFS1 Missense_Mutation p.L484F 0.50 tolerated(0.26) benign(0.066) TCGA-XK-AAIW-01 4 6303575 6303575 C T WFS1 Missense_Mutation p.R685C 0.28 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 4 6304076 6304076 G A WFS1 Missense_Mutation p.A852T 0.41 tolerated(0.18) benign(0.023) TCGA-XK-AAIW-01 4 650773 650773 C T PDE6B Silent p.D406D 0.26 TCGA-XK-AAIW-01 4 656356 656356 G A PDE6B Missense_Mutation p.G594D 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-XK-AAIW-01 4 66242775 66242775 G A EPHA5 Silent p.C599C 0.38 TCGA-XK-AAIW-01 4 66356360 66356360 C T EPHA5 Silent p.P379P 0.32 TCGA-XK-AAIW-01 4 68374560 68374560 C T CENPC Missense_Mutation p.A626T 0.40 tolerated(0.36) benign(0.229) TCGA-XK-AAIW-01 4 68543398 68543398 G A UBA6 Silent p.Y132Y 0.37 TCGA-XK-AAIW-01 4 68928888 68928888 C T TMPRSS11F Intron 0.24 TCGA-XK-AAIW-01 4 68995533 68995533 C T TMPRSS11F Missense_Mutation p.M2I 0.23 tolerated_low_confidence(0.07) benign(0.002) TCGA-XK-AAIW-01 4 69519894 69519894 C T UGT2B15 Missense_Mutation p.V392M 0.39 deleterious(0.03) possibly_damaging(0.804) TCGA-XK-AAIW-01 4 69696393 69696393 C A UGT2B10 Missense_Mutation p.F461L 0.40 deleterious(0.02) benign(0.443) TCGA-XK-AAIW-01 4 69978269 69978269 C T UGT2B7 Missense_Mutation p.R469C 0.42 deleterious(0.04) benign(0.092) TCGA-XK-AAIW-01 4 70152508 70152508 T C UGT2B28 Silent p.G303G 0.29 TCGA-XK-AAIW-01 4 7026873 7026873 G A TBC1D14 Missense_Mutation p.D634N 0.45 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 4 70361411 70361411 C T UGT2B4 Missense_Mutation p.A57T 0.35 tolerated(0.93) benign(0.01) TCGA-XK-AAIW-01 4 7056103 7056103 C T TADA2B Silent p.D195D 0.38 TCGA-XK-AAIW-01 4 70592725 70592725 G A SULT1B1 3'UTR 0.60 TCGA-XK-AAIW-01 4 71339748 71339748 C T MUC7 Silent p.L4L 0.18 TCGA-XK-AAIW-01 4 71588264 71588264 G A RUFY3 5'UTR 0.39 TCGA-XK-AAIW-01 4 72352686 72352686 A G SLC4A4 Missense_Mutation p.D642G 0.31 tolerated(0.45) benign(0) TCGA-XK-AAIW-01 4 73169736 73169736 C T ADAMTS3 Silent p.S774S 0.40 TCGA-XK-AAIW-01 4 74019646 74019646 C T ANKRD17 Silent p.T395T 0.47 TCGA-XK-AAIW-01 4 74364910 74364910 G T AFM Missense_Mutation p.A457S 0.37 tolerated(0.13) benign(0.249) TCGA-XK-AAIW-01 4 75937973 75937973 G A PARM1 Missense_Mutation p.G128S 0.37 tolerated(0.44) benign(0.072) TCGA-XK-AAIW-01 4 75938008 75938008 G A PARM1 Silent p.S139S 0.34 TCGA-XK-AAIW-01 4 76407699 76407699 C A RCHY1 3'UTR 0.18 TCGA-XK-AAIW-01 4 76434475 76434475 C T RCHY1 Missense_Mutation p.R41H 0.35 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 4 76523296 76523296 A G CDKL2 Missense_Mutation p.S329P 0.25 tolerated(0.22) benign(0.323) TCGA-XK-AAIW-01 4 76570792 76570792 C T G3BP2 Missense_Mutation p.R424H 0.60 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 4 76805865 76805865 C T PPEF2 Missense_Mutation p.V210M 0.16 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 76871895 76871895 C T AC110615.1 Missense_Mutation p.P5S 0.22 benign(0) TCGA-XK-AAIW-01 4 76924672 76924672 C T CXCL9 3'UTR 0.76 TCGA-XK-AAIW-01 4 76943936 76943936 G A CXCL10 Silent p.C32C 0.45 TCGA-XK-AAIW-01 4 77091034 77091034 C T SCARB2 Missense_Mutation p.V367M 0.32 tolerated(0.05) benign(0.089) TCGA-XK-AAIW-01 4 77290768 77290768 T C CCDC158 Silent p.L386L 0.19 TCGA-XK-AAIW-01 4 77292662 77292662 G A CCDC158 Missense_Mutation p.L353F 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-XK-AAIW-01 4 77324400 77324400 G A CCDC158 5'UTR 0.32 TCGA-XK-AAIW-01 4 7774729 7774729 G A AFAP1 Missense_Mutation p.P691S 0.67 tolerated(0.89) benign(0.001) TCGA-XK-AAIW-01 4 7780603 7780603 G A AFAP1 Missense_Mutation p.L595F 0.18 tolerated(0.42) benign(0.003) TCGA-XK-AAIW-01 4 77969538 77969538 C T CCNI Missense_Mutation p.R323H 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-XK-AAIW-01 4 78647372 78647372 G A CNOT6L Silent p.S468S 0.16 TCGA-XK-AAIW-01 4 79240097 79240097 G A FRAS1 Silent p.Q698Q 0.45 TCGA-XK-AAIW-01 4 79434602 79434602 C A FRAS1 Missense_Mutation p.T3357N 0.08 probably_damaging(1) TCGA-XK-AAIW-01 4 8230217 8230217 G C SH3TC1 Silent p.L932L 0.37 TCGA-XK-AAIW-01 4 84230632 84230632 G A HPSE Missense_Mutation p.R303W 0.30 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 4 84240569 84240569 C T HPSE Missense_Mutation p.E143K 0.35 tolerated(0.12) benign(0.036) TCGA-XK-AAIW-01 4 84342850 84342850 A G HELQ Missense_Mutation p.F939L 0.34 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 4 84358177 84358177 G T HELQ Missense_Mutation p.L628M 0.11 tolerated(0.1) benign(0.064) TCGA-XK-AAIW-01 4 844870 844870 G A GAK Nonsense_Mutation p.Q1171* 0.40 TCGA-XK-AAIW-01 4 853455 853455 C T GAK Nonsense_Mutation p.W1074* 0.35 TCGA-XK-AAIW-01 4 85564217 85564217 C T CDS1 Missense_Mutation p.A358V 0.36 tolerated(0.29) benign(0.14) TCGA-XK-AAIW-01 4 85609385 85609385 C T WDFY3 Missense_Mutation p.A3133T 0.22 deleterious(0.02) benign(0.042) TCGA-XK-AAIW-01 4 85611673 85611673 C T WDFY3 Missense_Mutation p.V3117I 0.31 tolerated(0.1) benign(0.001) TCGA-XK-AAIW-01 4 85626574 85626574 G A WDFY3 Missense_Mutation p.R2770W 0.09 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 4 85731295 85731295 C T WDFY3 Missense_Mutation p.R697H 0.26 deleterious(0) benign(0.334) TCGA-XK-AAIW-01 4 8605825 8605825 G A CPZ Missense_Mutation p.V207M 0.36 deleterious(0) probably_damaging(0.913) TCGA-XK-AAIW-01 4 86916274 86916274 C T ARHGAP24 Silent p.S489S 0.29 TCGA-XK-AAIW-01 4 88085050 88085050 C T KLHL8 Silent p.A573A 0.38 TCGA-XK-AAIW-01 4 88085121 88085121 C T KLHL8 Missense_Mutation p.A550T 0.49 deleterious(0.03) possibly_damaging(0.547) TCGA-XK-AAIW-01 4 88584147 88584147 G T DMP1 Missense_Mutation p.S406I 0.49 deleterious(0) unknown(0) TCGA-XK-AAIW-01 4 88766450 88766450 G A MEPE Missense_Mutation p.A144T 0.36 tolerated(0.35) benign(0.101) TCGA-XK-AAIW-01 4 89052995 89052995 C T ABCG2 Missense_Mutation p.R113Q 0.40 tolerated(1) benign(0.007) TCGA-XK-AAIW-01 4 89199518 89199518 T C PPM1K Missense_Mutation p.E73G 0.31 tolerated(0.31) possibly_damaging(0.854) TCGA-XK-AAIW-01 4 89363501 89363501 T C HERC6 Silent p.H986H 0.47 TCGA-XK-AAIW-01 4 89574198 89574198 G A HERC3 Nonsense_Mutation p.W214* 0.33 TCGA-XK-AAIW-01 4 90034372 90034372 A G TIGD2 Missense_Mutation p.M83V 0.41 tolerated(0.12) possibly_damaging(0.678) TCGA-XK-AAIW-01 4 90856978 90856978 G A MMRN1 Missense_Mutation p.R716H 0.45 tolerated(0.15) benign(0.064) TCGA-XK-AAIW-01 4 94344062 94344062 C T GRID2 Silent p.Y496Y 0.35 TCGA-XK-AAIW-01 4 95186038 95186038 C T SMARCAD1 Missense_Mutation p.P488S 0.09 deleterious(0.01) probably_damaging(0.99) TCGA-XK-AAIW-01 4 95575717 95575717 G A PDLIM5 Missense_Mutation p.A493T 0.28 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 4 96106267 96106267 G A UNC5C Silent p.H739H 0.41 TCGA-XK-AAIW-01 4 9836542 9836542 G A SLC2A9 Missense_Mutation p.S461F 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 4 98762082 98762082 A G STPG2 Missense_Mutation p.V349A 0.38 tolerated(0.77) benign(0.003) TCGA-XK-AAIW-01 4 99342450 99342450 C T RAP1GDS1 Missense_Mutation p.R450C 0.35 deleterious(0) benign(0.22) TCGA-XK-AAIW-01 4 99403179 99403179 G A TSPAN5 Missense_Mutation p.L143F 0.36 deleterious(0.02) probably_damaging(0.993) TCGA-XK-AAIW-01 5 101834537 101834537 G A SLCO6A1 Silent p.G4G 0.38 TCGA-XK-AAIW-01 5 102472454 102472454 C T PPIP5K2 Missense_Mutation p.A110V 0.38 deleterious(0.02) probably_damaging(0.963) TCGA-XK-AAIW-01 5 102487001 102487001 C A PPIP5K2 Silent p.S317S 0.37 TCGA-XK-AAIW-01 5 102490635 102490635 C T PPIP5K2 Missense_Mutation p.T464I 0.38 deleterious(0.01) benign(0.355) TCGA-XK-AAIW-01 5 102509648 102509648 C A PPIP5K2 Missense_Mutation p.S834Y 0.45 deleterious(0) probably_damaging(0.959) TCGA-XK-AAIW-01 5 102522033 102522033 C T PPIP5K2 Missense_Mutation p.A1061V 0.54 tolerated_low_confidence(0.07) benign(0.294) TCGA-XK-AAIW-01 5 102611808 102611808 G A C5orf30 Missense_Mutation p.G63D 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 1053571 1053571 T C SLC12A7 Missense_Mutation p.H1018R 0.50 deleterious(0) possibly_damaging(0.852) TCGA-XK-AAIW-01 5 1083909 1083909 G A SLC12A7 Silent p.N360N 0.26 TCGA-XK-AAIW-01 5 109117131 109117131 C T MAN2A1 Missense_Mutation p.A470V 0.40 deleterious(0.02) probably_damaging(0.966) TCGA-XK-AAIW-01 5 11022936 11022936 G A CTNND2 Missense_Mutation p.R982W 0.38 deleterious(0.02) possibly_damaging(0.806) TCGA-XK-AAIW-01 5 110434431 110434431 C A WDR36 Silent p.T157T 0.27 TCGA-XK-AAIW-01 5 110439987 110439987 C T WDR36 Missense_Mutation p.A337V 0.19 tolerated(0.12) possibly_damaging(0.493) TCGA-XK-AAIW-01 5 110446962 110446962 C T WDR36 Silent p.G623G 0.37 TCGA-XK-AAIW-01 5 110782460 110782460 C T CAMK4 Missense_Mutation p.A179V 0.35 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 5 110819782 110819782 G T CAMK4 Missense_Mutation p.G347V 0.37 deleterious(0.04) benign(0.021) TCGA-XK-AAIW-01 5 111091512 111091512 G A NREP Intron 0.48 TCGA-XK-AAIW-01 5 112384868 112384868 G A MCC Silent p.S859S 0.43 TCGA-XK-AAIW-01 5 112769553 112769553 G A TSSK1B Silent p.P328P 0.31 TCGA-XK-AAIW-01 5 112770389 112770389 C T TSSK1B Missense_Mutation p.A50T 0.29 tolerated(0.72) benign(0.004) TCGA-XK-AAIW-01 5 112915367 112915367 G T YTHDC2 Missense_Mutation p.W1110L 0.32 deleterious(0) possibly_damaging(0.873) TCGA-XK-AAIW-01 5 11364876 11364876 C T CTNND2 Missense_Mutation p.R435K 0.21 deleterious(0.02) possibly_damaging(0.546) TCGA-XK-AAIW-01 5 113740489 113740489 G A KCNN2 Missense_Mutation p.V313I 0.42 deleterious(0.03) possibly_damaging(0.729) TCGA-XK-AAIW-01 5 114861010 114861010 A G FEM1C Silent p.I283I 0.45 TCGA-XK-AAIW-01 5 114879005 114879005 C T FEM1C Silent p.E62E 0.18 TCGA-XK-AAIW-01 5 114916571 114916571 G T TMED7-TICAM2 Missense_Mutation p.A297D 0.08 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-XK-AAIW-01 5 114916761 114916761 C T TMED7-TICAM2 Missense_Mutation p.V234M 0.33 tolerated_low_confidence(0.15) benign(0.014) TCGA-XK-AAIW-01 5 115327976 115327976 C T AQPEP Splice_Site p.X420_splice 0.39 TCGA-XK-AAIW-01 5 115815886 115815886 C T SEMA6A Silent p.T394T 0.40 TCGA-XK-AAIW-01 5 115822496 115822496 C T SEMA6A Missense_Mutation p.R304H 0.42 tolerated(0.5) benign(0.001) TCGA-XK-AAIW-01 5 115827438 115827438 G A SEMA6A Missense_Mutation p.A178V 0.40 deleterious(0.02) probably_damaging(1) TCGA-XK-AAIW-01 5 118533507 118533507 A G DMXL1 Missense_Mutation p.E2534G 0.19 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 118728702 118728702 C A TNFAIP8 Missense_Mutation p.L75I 0.43 tolerated(0.26) probably_damaging(0.989) TCGA-XK-AAIW-01 5 118970010 118970010 G A FAM170A Silent p.G189G 0.48 TCGA-XK-AAIW-01 5 1201802 1201802 G A SLC6A19 Missense_Mutation p.A13T 0.42 tolerated(0.55) benign(0.001) TCGA-XK-AAIW-01 5 121187725 121187725 C T FTMT Missense_Mutation p.R23C 0.38 tolerated_low_confidence(0.09) benign(0.007) TCGA-XK-AAIW-01 5 1213643 1213643 G A SLC6A19 Silent p.T243T 0.41 TCGA-XK-AAIW-01 5 1216688 1216688 G T SLC6A19 Missense_Mutation p.K301N 0.15 deleterious(0.03) benign(0.284) TCGA-XK-AAIW-01 5 1217047 1217047 C T SLC6A19 Missense_Mutation p.A387V 0.31 tolerated(0.06) benign(0.063) TCGA-XK-AAIW-01 5 122165359 122165359 C T SNX2 3'UTR 0.19 TCGA-XK-AAIW-01 5 122272467 122272467 T C SNX24 Silent p.H33H 0.31 TCGA-XK-AAIW-01 5 123983470 123983470 C T ZNF608 Silent p.S869S 0.44 TCGA-XK-AAIW-01 5 1244331 1244331 C T SLC6A18 Silent p.L447L 0.17 TCGA-XK-AAIW-01 5 1264629 1264629 G A TERT Silent p.D911D 0.51 TCGA-XK-AAIW-01 5 126781226 126781226 G A MEGF10 Missense_Mutation p.G857R 0.38 deleterious(0) possibly_damaging(0.882) TCGA-XK-AAIW-01 5 126883555 126883555 G A PRRC1 Missense_Mutation p.G357D 0.25 tolerated(0.06) probably_damaging(0.981) TCGA-XK-AAIW-01 5 127614381 127614381 C T FBN2 Missense_Mutation p.A2431T 0.10 tolerated(0.57) benign(0.013) TCGA-XK-AAIW-01 5 127641254 127641254 G A FBN2 Missense_Mutation p.R1875C 0.49 deleterious(0) possibly_damaging(0.534) TCGA-XK-AAIW-01 5 127681174 127681174 G A FBN2 Missense_Mutation p.A1031V 0.24 tolerated(0.08) possibly_damaging(0.477) TCGA-XK-AAIW-01 5 128302176 128302176 C T SLC27A6 Missense_Mutation p.P116S 0.50 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 5 128844825 128844825 C T ADAMTS19 Missense_Mutation p.T262I 0.11 tolerated(0.11) probably_damaging(0.968) TCGA-XK-AAIW-01 5 131052273 131052273 G A FNIP1 Silent p.L203L 0.15 TCGA-XK-AAIW-01 5 131312359 131312359 G A ACSL6 Silent p.G324G 0.62 TCGA-XK-AAIW-01 5 131323905 131323905 C T ACSL6 Missense_Mutation p.V223M 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 131530664 131530664 G A P4HA2 Nonsense_Mutation p.R498* 0.40 TCGA-XK-AAIW-01 5 131543528 131543528 C A P4HA2 Missense_Mutation p.R318M 0.31 deleterious(0) possibly_damaging(0.548) TCGA-XK-AAIW-01 5 131647851 131647851 C T SLC22A4 Intron 0.33 TCGA-XK-AAIW-01 5 131714145 131714145 T C SLC22A5 Missense_Mutation p.S157P 0.38 deleterious(0) possibly_damaging(0.892) TCGA-XK-AAIW-01 5 131724688 131724688 G A SLC22A5 Missense_Mutation p.V343I 0.32 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 5 131729951 131729951 G A SLC22A5 Missense_Mutation p.S554N 0.51 tolerated(0.15) benign(0.003) TCGA-XK-AAIW-01 5 131877442 131877442 C A IL5 3'UTR 0.50 TCGA-XK-AAIW-01 5 131927067 131927067 G A RAD50 Missense_Mutation p.R535H 0.13 tolerated(0.08) possibly_damaging(0.667) TCGA-XK-AAIW-01 5 132056317 132056317 C T KIF3A Silent p.T200T 0.32 TCGA-XK-AAIW-01 5 132094204 132094204 C T SEPT8 Intron 0.23 TCGA-XK-AAIW-01 5 132099517 132099517 G A SEPT8 Missense_Mutation p.R139C 0.40 deleterious(0.03) benign(0.009) TCGA-XK-AAIW-01 5 132150756 132150756 C T SOWAHA Silent p.G481G 0.58 TCGA-XK-AAIW-01 5 1321902 1321902 G A CLPTM1L Missense_Mutation p.P450S 0.44 deleterious(0) probably_damaging(0.947) TCGA-XK-AAIW-01 5 132408971 132408971 C T HSPA4 Missense_Mutation p.T160I 0.49 deleterious(0) possibly_damaging(0.491) TCGA-XK-AAIW-01 5 132437570 132437570 G T HSPA4 Missense_Mutation p.K719N 0.19 tolerated(0.09) benign(0.033) TCGA-XK-AAIW-01 5 132535161 132535161 G A FSTL4 Missense_Mutation p.R719W 0.46 deleterious(0.05) benign(0.006) TCGA-XK-AAIW-01 5 1334415 1334415 C T CLPTM1L Missense_Mutation p.A294T 0.40 deleterious(0) benign(0.2) TCGA-XK-AAIW-01 5 133451600 133451600 G A TCF7 Missense_Mutation p.G106D 0.39 deleterious(0.03) probably_damaging(0.969) TCGA-XK-AAIW-01 5 133493366 133493366 G T SKP1 3'UTR 0.32 TCGA-XK-AAIW-01 5 133914504 133914504 G A JADE2 Missense_Mutation p.A624T 0.39 tolerated(0.59) benign(0.002) TCGA-XK-AAIW-01 5 134056760 134056760 G A SEC24A Missense_Mutation p.A1015T 0.15 tolerated(0.12) benign(0.014) TCGA-XK-AAIW-01 5 134099638 134099638 G A DDX46 Missense_Mutation p.R21Q 0.42 tolerated_low_confidence(0.1) unknown(0) TCGA-XK-AAIW-01 5 134223831 134223831 G T TXNDC15 Nonsense_Mutation p.G184* 0.30 TCGA-XK-AAIW-01 5 134332150 134332150 G A CATSPER3 Missense_Mutation p.G147D 0.34 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 5 134367190 134367190 G A PITX1 Missense_Mutation p.R60C 0.52 tolerated(0.18) benign(0.337) TCGA-XK-AAIW-01 5 135692605 135692605 G A TRPC7 Silent p.D157D 0.22 TCGA-XK-AAIW-01 5 136324289 136324289 G A SPOCK1 Silent p.G250G 0.18 TCGA-XK-AAIW-01 5 137013258 137013258 C A KLHL3 Missense_Mutation p.K204N 0.45 tolerated(0.07) benign(0.06) TCGA-XK-AAIW-01 5 137217729 137217729 C T MYOT Missense_Mutation p.R251C 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 137284782 137284782 G A FAM13B Silent p.D652D 0.40 TCGA-XK-AAIW-01 5 137288395 137288395 A T FAM13B Missense_Mutation p.S596T 0.44 deleterious(0.04) probably_damaging(0.993) TCGA-XK-AAIW-01 5 137520619 137520619 C T KIF20A Missense_Mutation p.R603W 0.44 deleterious(0.02) probably_damaging(0.918) TCGA-XK-AAIW-01 5 137533941 137533941 G A CDC23 Missense_Mutation p.A320V 0.33 deleterious(0) probably_damaging(0.977) TCGA-XK-AAIW-01 5 137542112 137542112 C T CDC23 Intron 0.44 TCGA-XK-AAIW-01 5 137548685 137548685 T C CDC23 Missense_Mutation p.T77A 0.24 tolerated(0.43) benign(0.115) TCGA-XK-AAIW-01 5 137717276 137717276 C T KDM3B Silent p.S259S 0.47 TCGA-XK-AAIW-01 5 137780150 137780150 C A REEP2 Missense_Mutation p.L77M 0.38 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 5 137781460 137781460 C G REEP2 3'UTR 0.30 TCGA-XK-AAIW-01 5 137803153 137803153 G A EGR1 Missense_Mutation p.A339T 0.37 deleterious(0.03) unknown(0) TCGA-XK-AAIW-01 5 137803314 137803314 C T EGR1 Silent p.G392G 0.33 TCGA-XK-AAIW-01 5 137848593 137848593 G A ETF1 Nonsense_Mutation p.R198* 0.53 TCGA-XK-AAIW-01 5 138118999 138118999 C T CTNNA1 Missense_Mutation p.A80V 0.32 tolerated(0.09) probably_damaging(0.956) TCGA-XK-AAIW-01 5 138209844 138209844 G A LRRTM2 Nonsense_Mutation p.Q136* 0.25 TCGA-XK-AAIW-01 5 13824306 13824306 A G DNAH5 Splice_Site p.X2193_splice 0.21 TCGA-XK-AAIW-01 5 138269727 138269727 C T CTNNA1 Silent p.H890H 0.19 TCGA-XK-AAIW-01 5 13841205 13841205 C T DNAH5 Missense_Mutation p.R1840Q 0.35 benign(0.238) TCGA-XK-AAIW-01 5 13841860 13841860 C T DNAH5 Missense_Mutation p.A1809T 0.48 benign(0.008) TCGA-XK-AAIW-01 5 138761897 138761897 G T DNAJC18 Missense_Mutation p.L175M 0.33 deleterious(0) possibly_damaging(0.802) TCGA-XK-AAIW-01 5 139060706 139060706 G A CXXC5 Missense_Mutation p.E200K 0.53 deleterious(0.01) possibly_damaging(0.771) TCGA-XK-AAIW-01 5 139216755 139216755 C A PSD2 Missense_Mutation p.P533T 0.32 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 139818200 139818200 C T ANKHD1 Silent p.D205D 0.40 TCGA-XK-AAIW-01 5 139865209 139865209 T C ANKHD1 Silent p.G678G 0.35 TCGA-XK-AAIW-01 5 139908134 139908134 G A ANKHD1 Missense_Mutation p.R1868Q 0.52 probably_damaging(0.984) TCGA-XK-AAIW-01 5 139942036 139942036 G T APBB3 Missense_Mutation p.L134M 0.32 tolerated(0.07) probably_damaging(1) TCGA-XK-AAIW-01 5 139947311 139947311 C T SLC35A4 Missense_Mutation p.P186L 0.40 tolerated(1) possibly_damaging(0.494) TCGA-XK-AAIW-01 5 140011446 140011446 C T CD14 Missense_Mutation p.A375T 0.10 deleterious(0) probably_damaging(0.928) TCGA-XK-AAIW-01 5 140012544 140012544 G A CD14 Silent p.L9L 0.27 TCGA-XK-AAIW-01 5 140032579 140032579 G A IK Missense_Mutation p.R85H 0.56 deleterious(0) possibly_damaging(0.903) TCGA-XK-AAIW-01 5 140041994 140041994 T C IK 3'UTR 0.48 TCGA-XK-AAIW-01 5 140166017 140166017 G A PCDHA1 Missense_Mutation p.V48I 0.38 tolerated_low_confidence(1) benign(0.003) TCGA-XK-AAIW-01 5 140167325 140167325 G A PCDHA1 Missense_Mutation p.A484T 0.37 tolerated_low_confidence(0.05) benign(0.3) TCGA-XK-AAIW-01 5 140176054 140176054 G A PCDHA2 Missense_Mutation p.R502H 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.489) TCGA-XK-AAIW-01 5 140176990 140176990 T C PCDHA2 Intron 0.34 TCGA-XK-AAIW-01 5 140181323 140181323 G A PCDHA3 Missense_Mutation p.D181N 0.25 deleterious_low_confidence(0.03) benign(0.396) TCGA-XK-AAIW-01 5 140182316 140182316 G A PCDHA3 Missense_Mutation p.A512T 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.645) TCGA-XK-AAIW-01 5 140187880 140187880 G A PCDHA4 Missense_Mutation p.A370T 0.33 tolerated_low_confidence(0.08) benign(0.08) TCGA-XK-AAIW-01 5 140188302 140188302 G A PCDHA4 Silent p.V510V 0.54 TCGA-XK-AAIW-01 5 140188964 140188964 C T PCDHA4 Missense_Mutation p.A731V 0.37 tolerated_low_confidence(0.33) benign(0.003) TCGA-XK-AAIW-01 5 140201505 140201505 C G PCDHA5 Missense_Mutation p.Q49E 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.576) TCGA-XK-AAIW-01 5 140202728 140202728 G T PCDHA5 Missense_Mutation p.Q456H 0.45 deleterious_low_confidence(0.03) benign(0.345) TCGA-XK-AAIW-01 5 140203117 140203117 C T PCDHA5 Missense_Mutation p.A586V 0.40 tolerated_low_confidence(0.11) benign(0.068) TCGA-XK-AAIW-01 5 140209590 140209590 C T PCDHA6 Silent p.D638D 0.32 TCGA-XK-AAIW-01 5 140222014 140222014 G A PCDHA8 Missense_Mutation p.A370T 0.39 tolerated_low_confidence(0.08) benign(0.339) TCGA-XK-AAIW-01 5 140222774 140222774 G A PCDHA8 Missense_Mutation p.R623H 0.38 deleterious_low_confidence(0.01) benign(0.152) TCGA-XK-AAIW-01 5 140237600 140237600 C T PCDHA10 Missense_Mutation p.P656L 0.33 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-XK-AAIW-01 5 140242711 140242711 A G AC005609.1 Missense_Mutation p.W89R 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.781) TCGA-XK-AAIW-01 5 140249998 140249998 C T PCDHA11 Missense_Mutation p.T437M 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.754) TCGA-XK-AAIW-01 5 140250190 140250190 G A PCDHA11 Missense_Mutation p.R501H 0.31 deleterious_low_confidence(0) benign(0.271) TCGA-XK-AAIW-01 5 140250616 140250616 G A PCDHA11 Missense_Mutation p.R643H 0.40 deleterious_low_confidence(0.02) benign(0.24) TCGA-XK-AAIW-01 5 140250647 140250647 C T PCDHA11 Silent p.H653H 0.44 TCGA-XK-AAIW-01 5 140256125 140256125 G A PCDHA12 Silent p.S356S 0.36 TCGA-XK-AAIW-01 5 140263357 140263357 C T PCDHA13 Missense_Mutation p.R502C 0.43 deleterious_low_confidence(0) benign(0.249) TCGA-XK-AAIW-01 5 140263536 140263536 C T PCDHA13 Silent p.N561N 0.34 TCGA-XK-AAIW-01 5 140307447 140307447 G A PCDHAC1 Missense_Mutation p.A324T 0.42 tolerated(0.11) benign(0.026) TCGA-XK-AAIW-01 5 140347577 140347577 C A PCDHAC2 Missense_Mutation p.P409H 0.28 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 140348229 140348229 G T PCDHAC2 Missense_Mutation p.Q626H 0.45 tolerated(0.12) benign(0.005) TCGA-XK-AAIW-01 5 140348837 140348837 G T PCDHAC2 Missense_Mutation p.S829I 0.35 tolerated(0.19) benign(0.025) TCGA-XK-AAIW-01 5 140475094 140475094 C T PCDHB2 Silent p.N240N 0.33 TCGA-XK-AAIW-01 5 140475758 140475758 G A PCDHB2 Missense_Mutation p.V462I 0.09 tolerated_low_confidence(0.15) benign(0.081) TCGA-XK-AAIW-01 5 140476040 140476040 G A PCDHB2 Missense_Mutation p.A556T 0.32 tolerated_low_confidence(0.2) benign(0.057) TCGA-XK-AAIW-01 5 140476903 140476903 G A PCDHB2 3'UTR 0.37 TCGA-XK-AAIW-01 5 140503186 140503186 G A PCDHB4 Missense_Mutation p.G536S 0.48 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 140516633 140516633 G A PCDHB5 Silent p.A539A 0.38 TCGA-XK-AAIW-01 5 140552434 140552434 G A PCDHB7 Silent p.E6E 0.15 TCGA-XK-AAIW-01 5 140554290 140554290 G A PCDHB7 Missense_Mutation p.R625H 0.51 deleterious_low_confidence(0.05) possibly_damaging(0.511) TCGA-XK-AAIW-01 5 140573503 140573503 G A PCDHB10 Missense_Mutation p.V460I 0.24 tolerated_low_confidence(0.16) benign(0.095) TCGA-XK-AAIW-01 5 140594169 140594169 C T PCDHB13 Silent p.A158A 0.32 TCGA-XK-AAIW-01 5 140604449 140604449 C A PCDHB14 Missense_Mutation p.L458M 0.17 tolerated_low_confidence(0.11) possibly_damaging(0.633) TCGA-XK-AAIW-01 5 140616030 140616030 C T PCDHB18 RNA 0.25 TCGA-XK-AAIW-01 5 140626753 140626753 G A PCDHB15 Missense_Mutation p.R536H 0.40 tolerated_low_confidence(0.06) benign(0.061) TCGA-XK-AAIW-01 5 140627138 140627138 C T PCDHB15 Silent p.D664D 0.39 TCGA-XK-AAIW-01 5 140627234 140627234 G A PCDHB15 Silent p.S696S 0.45 TCGA-XK-AAIW-01 5 140683225 140683225 C T SLC25A2 Missense_Mutation p.A70T 0.53 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 5 140710637 140710637 A G PCDHGA1 Missense_Mutation p.N129S 0.30 deleterious_low_confidence(0.02) benign(0.323) TCGA-XK-AAIW-01 5 140711852 140711852 C T PCDHGA1 Missense_Mutation p.A534V 0.34 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-XK-AAIW-01 5 140712130 140712130 C T PCDHGA1 Missense_Mutation p.R627C 0.26 deleterious_low_confidence(0.02) benign(0.344) TCGA-XK-AAIW-01 5 140712162 140712162 G A PCDHGA1 Silent p.A637A 0.60 TCGA-XK-AAIW-01 5 140712458 140712458 C T PCDHGA1 Missense_Mutation p.P736L 0.41 deleterious_low_confidence(0) possibly_damaging(0.703) TCGA-XK-AAIW-01 5 140720865 140720865 C T PCDHGA2 Missense_Mutation p.A776V 0.34 tolerated_low_confidence(0.06) benign(0.086) TCGA-XK-AAIW-01 5 140731333 140731333 C T PCDHGB1 Silent p.S502S 0.29 TCGA-XK-AAIW-01 5 140731491 140731491 C T PCDHGB1 Missense_Mutation p.A555V 0.41 tolerated(0.07) benign(0.285) TCGA-XK-AAIW-01 5 140731726 140731726 G A PCDHGB1 Silent p.A633A 0.39 TCGA-XK-AAIW-01 5 140743899 140743899 T C PCDHGA5 Translation_Start_Site p.M1? 0.52 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-XK-AAIW-01 5 140744944 140744944 C T PCDHGA5 Silent p.L349L 0.40 TCGA-XK-AAIW-01 5 140753679 140753679 G A PCDHGA6 Missense_Mutation p.R10H 0.25 tolerated_low_confidence(0.54) benign(0.009) TCGA-XK-AAIW-01 5 140755558 140755558 C T PCDHGA6 Silent p.D636D 0.54 TCGA-XK-AAIW-01 5 140768945 140768945 G A PCDHGB4 Silent p.E498E 0.36 TCGA-XK-AAIW-01 5 140769586 140769586 G A PCDHGB4 Missense_Mutation p.R712H 0.35 tolerated(0.12) benign(0.012) TCGA-XK-AAIW-01 5 140773156 140773156 C T PCDHGA8 Missense_Mutation p.T259M 0.28 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-XK-AAIW-01 5 140782757 140782757 C T PCDHGA9 Missense_Mutation p.R80C 0.42 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-XK-AAIW-01 5 140788076 140788076 G A PCDHGB6 Missense_Mutation p.E103K 0.27 tolerated(0.18) benign(0.051) TCGA-XK-AAIW-01 5 140795118 140795118 C T PCDHGA10 Silent p.N792N 0.39 TCGA-XK-AAIW-01 5 140856593 140856593 C T PCDHGC3 Silent p.L304L 0.45 TCGA-XK-AAIW-01 5 140857013 140857013 C T PCDHGC3 Missense_Mutation p.R444C 0.47 tolerated(0.17) possibly_damaging(0.606) TCGA-XK-AAIW-01 5 140857027 140857027 C T PCDHGC3 Silent p.S448S 0.39 TCGA-XK-AAIW-01 5 140865341 140865341 G A PCDHGC4 Missense_Mutation p.D201N 0.54 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 140866578 140866578 C T PCDHGC4 Missense_Mutation p.A613V 0.50 tolerated(0.06) possibly_damaging(0.781) TCGA-XK-AAIW-01 5 141029928 141029928 G A FCHSD1 Nonsense_Mutation p.Q55* 0.11 TCGA-XK-AAIW-01 5 141036142 141036142 G A ARAP3 Silent p.L1240L 0.44 TCGA-XK-AAIW-01 5 141041527 141041527 C T ARAP3 Intron 0.31 TCGA-XK-AAIW-01 5 141052155 141052155 C T ARAP3 Missense_Mutation p.R450Q 0.41 tolerated(0.28) probably_damaging(0.941) TCGA-XK-AAIW-01 5 141248331 141248331 C T PCDH1 Missense_Mutation p.G236S 0.57 tolerated(0.05) probably_damaging(0.911) TCGA-XK-AAIW-01 5 141316895 141316895 C T KIAA0141 Nonsense_Mutation p.R428* 0.40 TCGA-XK-AAIW-01 5 141359810 141359810 G A RNF14 Missense_Mutation p.M319I 0.37 tolerated(0.09) benign(0.017) TCGA-XK-AAIW-01 5 141364434 141364434 G A RNF14 Missense_Mutation p.G435S 0.31 tolerated(0.54) benign(0.004) TCGA-XK-AAIW-01 5 141384537 141384537 G A GNPDA1 Missense_Mutation p.A185V 0.70 deleterious(0) probably_damaging(0.939) TCGA-XK-AAIW-01 5 141694197 141694197 G A SPRY4 Silent p.C182C 0.20 TCGA-XK-AAIW-01 5 142311642 142311642 G A ARHGAP26 Silent p.S353S 0.32 TCGA-XK-AAIW-01 5 14286996 14286996 C T TRIO Missense_Mutation p.R122C 0.30 probably_damaging(0.971) TCGA-XK-AAIW-01 5 14287024 14287024 G A TRIO Missense_Mutation p.R131H 0.45 probably_damaging(0.996) TCGA-XK-AAIW-01 5 14482807 14482807 C T TRIO Silent p.I2194I 0.39 TCGA-XK-AAIW-01 5 14492825 14492825 C T TRIO Silent p.A2594A 0.46 TCGA-XK-AAIW-01 5 145533300 145533300 C A LARS Missense_Mutation p.K409N 0.31 deleterious(0) possibly_damaging(0.727) TCGA-XK-AAIW-01 5 145834753 145834753 C T TCERG1 Missense_Mutation p.P65L 0.48 tolerated_low_confidence(0.63) possibly_damaging(0.726) TCGA-XK-AAIW-01 5 147553880 147553880 C T SPINK14 Silent p.C65C 0.09 TCGA-XK-AAIW-01 5 14769120 14769120 C T ANKH Missense_Mutation p.A93T 0.36 tolerated(0.37) benign(0.306) TCGA-XK-AAIW-01 5 147813012 147813012 C T FBXO38 Silent p.H818H 0.34 TCGA-XK-AAIW-01 5 148421181 148421181 C A SH3TC2 Splice_Site p.X177_splice 0.39 TCGA-XK-AAIW-01 5 148699201 148699201 C A AFAP1L1 Silent p.G512G 0.24 TCGA-XK-AAIW-01 5 149003654 149003654 G A ARHGEF37 Missense_Mutation p.R472H 0.21 tolerated(0.36) benign(0.001) TCGA-XK-AAIW-01 5 149212311 149212311 C T PPARGC1B Silent p.C225C 0.42 TCGA-XK-AAIW-01 5 149212721 149212721 C T PPARGC1B Missense_Mutation p.A362V 0.45 deleterious(0.03) probably_damaging(0.981) TCGA-XK-AAIW-01 5 149216065 149216065 C T PPARGC1B Missense_Mutation p.R683C 0.39 deleterious(0) probably_damaging(0.944) TCGA-XK-AAIW-01 5 149216274 149216274 C T PPARGC1B Silent p.S752S 0.40 TCGA-XK-AAIW-01 5 149225563 149225563 C T PPARGC1B Intron 0.60 TCGA-XK-AAIW-01 5 149264056 149264056 G A PDE6A Silent p.L671L 0.47 TCGA-XK-AAIW-01 5 149360642 149360642 C T SLC26A2 Missense_Mutation p.R496C 0.41 tolerated(0.07) benign(0.159) TCGA-XK-AAIW-01 5 149460389 149460389 C T CSF1R Missense_Mutation p.R83H 0.47 tolerated(0.29) benign(0.003) TCGA-XK-AAIW-01 5 149460482 149460482 C T CSF1R Missense_Mutation p.G52D 0.48 tolerated(0.27) benign(0.278) TCGA-XK-AAIW-01 5 149576691 149576691 G A SLC6A7 Missense_Mutation p.A146T 0.43 deleterious(0.05) probably_damaging(0.993) TCGA-XK-AAIW-01 5 149677669 149677669 G A ARSI Missense_Mutation p.A273V 0.25 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 5 149907854 149907854 C T NDST1 Silent p.D334D 0.40 TCGA-XK-AAIW-01 5 150028074 150028074 G A SYNPO Silent p.T323T 0.08 TCGA-XK-AAIW-01 5 150029259 150029259 C T SYNPO Silent p.S718S 0.24 TCGA-XK-AAIW-01 5 150436423 150436423 G A TNIP1 Silent p.H177H 0.53 TCGA-XK-AAIW-01 5 150439883 150439883 G A TNIP1 Missense_Mutation p.A144V 0.31 tolerated(0.34) benign(0.031) TCGA-XK-AAIW-01 5 150718707 150718707 T C SLC36A2 Splice_Site p.X147_splice 0.43 TCGA-XK-AAIW-01 5 150723083 150723083 C T SLC36A2 Missense_Mutation p.R111H 0.28 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 5 150847345 150847345 G A SLC36A1 Silent p.S194S 0.56 TCGA-XK-AAIW-01 5 150867696 150867696 G A SLC36A1 Missense_Mutation p.A438T 0.32 tolerated(0.07) benign(0.037) TCGA-XK-AAIW-01 5 150887067 150887067 G A FAT2 Silent p.A4055A 0.45 TCGA-XK-AAIW-01 5 150901351 150901351 G A FAT2 Silent p.N3601N 0.28 TCGA-XK-AAIW-01 5 150945295 150945295 C T FAT2 Silent p.E1066E 0.35 TCGA-XK-AAIW-01 5 150947924 150947924 C A FAT2 Missense_Mutation p.R190M 0.36 probably_damaging(0.988) TCGA-XK-AAIW-01 5 153149800 153149800 A T GRIA1 Missense_Mutation p.T709S 0.46 tolerated(0.18) benign(0.411) TCGA-XK-AAIW-01 5 153433126 153433126 T C MFAP3 Silent p.V314V 0.13 TCGA-XK-AAIW-01 5 153709146 153709146 G A GALNT10 Missense_Mutation p.R139H 0.12 tolerated(0.14) benign(0.11) TCGA-XK-AAIW-01 5 153760106 153760106 C T GALNT10 Missense_Mutation p.R285W 0.33 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 154174848 154174848 C T LARP1 Missense_Mutation p.A372V 0.42 deleterious(0) probably_damaging(0.921) TCGA-XK-AAIW-01 5 154190896 154190896 C T LARP1 Missense_Mutation p.T901M 0.42 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 156482274 156482274 C T HAVCR1 Missense_Mutation p.R106H 0.30 deleterious(0.02) benign(0.001) TCGA-XK-AAIW-01 5 156514161 156514161 G A HAVCR2 Silent p.S286S 0.46 TCGA-XK-AAIW-01 5 156566357 156566357 C T MED7 Missense_Mutation p.G29D 0.40 tolerated(0.06) possibly_damaging(0.483) TCGA-XK-AAIW-01 5 156589546 156589546 G A FAM71B Missense_Mutation p.A577V 0.37 deleterious(0.03) benign(0.213) TCGA-XK-AAIW-01 5 156649954 156649954 C T ITK Missense_Mutation p.R193W 0.32 tolerated(0.19) possibly_damaging(0.67) TCGA-XK-AAIW-01 5 156816239 156816239 C T CYFIP2 Missense_Mutation p.R1058W 0.50 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 156816382 156816382 C T CYFIP2 Silent p.S1105S 0.31 TCGA-XK-AAIW-01 5 156899810 156899810 G A NIPAL4 Missense_Mutation p.A415T 0.45 tolerated(0.47) benign(0.001) TCGA-XK-AAIW-01 5 156918644 156918644 T C ADAM19 Missense_Mutation p.S692G 0.50 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 157078120 157078120 C A SOX30 Missense_Mutation p.G323C 0.40 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 5 157078230 157078230 A G SOX30 Missense_Mutation p.L286S 0.39 deleterious(0) possibly_damaging(0.893) TCGA-XK-AAIW-01 5 157166533 157166533 C A THG1L 3'UTR 0.53 TCGA-XK-AAIW-01 5 157214774 157214774 G A CLINT1 Silent p.S604S 0.29 TCGA-XK-AAIW-01 5 15936658 15936658 C T FBXL7 Missense_Mutation p.T280M 0.63 deleterious(0) possibly_damaging(0.569) TCGA-XK-AAIW-01 5 15936755 15936755 C T FBXL7 Silent p.T312T 0.27 TCGA-XK-AAIW-01 5 15936788 15936788 C T FBXL7 Silent p.C323C 0.29 TCGA-XK-AAIW-01 5 159665625 159665625 G A FABP6 Missense_Mutation p.G165R 0.27 deleterious(0.01) benign(0.32) TCGA-XK-AAIW-01 5 159665722 159665722 C T FABP6 3'UTR 0.14 TCGA-XK-AAIW-01 5 159680778 159680778 G A CCNJL Silent p.A305A 0.33 TCGA-XK-AAIW-01 5 159849845 159849845 C A PTTG1 Missense_Mutation p.S74Y 0.45 deleterious(0.01) possibly_damaging(0.89) TCGA-XK-AAIW-01 5 159854762 159854762 G A PTTG1 Silent p.A137A 0.44 TCGA-XK-AAIW-01 5 162910328 162910328 G A HMMR Nonsense_Mutation p.W580* 0.13 TCGA-XK-AAIW-01 5 16675191 16675191 G A MYO10 Silent p.L1579L 0.38 TCGA-XK-AAIW-01 5 16694490 16694490 G A MYO10 Nonsense_Mutation p.R1264* 0.35 TCGA-XK-AAIW-01 5 167379716 167379716 G A TENM2 Missense_Mutation p.R279Q 0.27 tolerated_low_confidence(0.31) probably_damaging(0.998) TCGA-XK-AAIW-01 5 167642259 167642259 A G TENM2 Missense_Mutation p.T1354A 0.36 tolerated(0.2) benign(0.103) TCGA-XK-AAIW-01 5 167643796 167643796 C T TENM2 Missense_Mutation p.L1368F 0.28 tolerated(0.2) benign(0.26) TCGA-XK-AAIW-01 5 167645468 167645468 C T TENM2 Silent p.N1524N 0.33 TCGA-XK-AAIW-01 5 167674683 167674683 C T TENM2 Missense_Mutation p.R2247C 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 167798441 167798441 G A WWC1 Silent p.P44P 0.32 TCGA-XK-AAIW-01 5 167957368 167957368 G A FBLL1 Missense_Mutation p.A287T 0.52 deleterious(0.02) possibly_damaging(0.637) TCGA-XK-AAIW-01 5 168114118 168114118 G A SLIT3 Silent p.C1060C 0.32 TCGA-XK-AAIW-01 5 16818191 16818191 G A MYO10 Missense_Mutation p.A69V 0.33 deleterious(0.04) probably_damaging(0.996) TCGA-XK-AAIW-01 5 169031117 169031117 C T SPDL1 Missense_Mutation p.S575L 0.41 tolerated(0.27) benign(0.018) TCGA-XK-AAIW-01 5 169122822 169122822 G T DOCK2 Missense_Mutation p.D287Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 5 169129425 169129425 G A DOCK2 Silent p.T459T 0.29 TCGA-XK-AAIW-01 5 169474577 169474577 G A DOCK2 Missense_Mutation p.A1344T 0.37 tolerated(0.11) probably_damaging(0.942) TCGA-XK-AAIW-01 5 169533417 169533417 C T FOXI1 Silent p.Y152Y 0.30 TCGA-XK-AAIW-01 5 170235671 170235671 C A GABRP Silent p.T249T 0.42 TCGA-XK-AAIW-01 5 170640638 170640638 C T RANBP17 Silent p.Y745Y 0.34 TCGA-XK-AAIW-01 5 171482621 171482621 C T STK10 Missense_Mutation p.A833T 0.58 tolerated(0.22) benign(0.378) TCGA-XK-AAIW-01 5 17275931 17275931 C T BASP1 Silent p.P202P 0.41 TCGA-XK-AAIW-01 5 17354235 17354235 G A CTD-2139B15.2 Intron 0.42 TCGA-XK-AAIW-01 5 174156454 174156454 C T MSX2 Silent p.F224F 0.36 TCGA-XK-AAIW-01 5 174919176 174919176 C T SFXN1 Nonsense_Mutation p.R24* 0.33 TCGA-XK-AAIW-01 5 175111083 175111083 C A HRH2 Missense_Mutation p.L283M 0.33 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 175306900 175306900 T A CPLX2 Missense_Mutation p.L86Q 0.30 tolerated(0.08) benign(0.213) TCGA-XK-AAIW-01 5 175391978 175391978 C T THOC3 Missense_Mutation p.G202D 0.24 deleterious(0.01) possibly_damaging(0.901) TCGA-XK-AAIW-01 5 175716874 175716874 G A SIMC1 Intron 0.43 TCGA-XK-AAIW-01 5 175722173 175722173 C T SIMC1 Silent p.I90I 0.38 TCGA-XK-AAIW-01 5 175763860 175763860 C T SIMC1 Missense_Mutation p.T336M 0.36 deleterious(0) possibly_damaging(0.862) TCGA-XK-AAIW-01 5 175824951 175824951 C A CLTB Missense_Mutation p.R111M 0.37 deleterious(0.05) possibly_damaging(0.827) TCGA-XK-AAIW-01 5 176008535 176008535 C T CDHR2 Silent p.C670C 0.28 TCGA-XK-AAIW-01 5 176019772 176019772 G T CDHR2 Missense_Mutation p.Q1261H 0.33 tolerated(0.1) benign(0.26) TCGA-XK-AAIW-01 5 176083709 176083709 G A TSPAN17 Silent p.E216E 0.38 TCGA-XK-AAIW-01 5 176310871 176310871 C A HK3 Splice_Site p.X652_splice 0.32 TCGA-XK-AAIW-01 5 176317707 176317707 C A HK3 Missense_Mutation p.G187C 0.27 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 176707813 176707813 G A NSD1 Missense_Mutation p.R1957Q 0.45 tolerated(0.5) benign(0.111) TCGA-XK-AAIW-01 5 176719086 176719086 C T NSD1 Silent p.L2130L 0.37 TCGA-XK-AAIW-01 5 176720970 176720970 T C NSD1 Missense_Mutation p.S2201P 0.13 deleterious(0.02) possibly_damaging(0.837) TCGA-XK-AAIW-01 5 176729462 176729462 G A RAB24 Silent p.D123D 0.33 TCGA-XK-AAIW-01 5 176734595 176734595 C T MXD3 Nonsense_Mutation p.W205* 0.27 TCGA-XK-AAIW-01 5 176734710 176734710 C T MXD3 Intron 0.50 TCGA-XK-AAIW-01 5 176825064 176825064 C T SLC34A1 Missense_Mutation p.P566L 0.20 deleterious(0.02) probably_damaging(0.963) TCGA-XK-AAIW-01 5 176857946 176857946 C T GRK6 Silent p.C42C 0.27 TCGA-XK-AAIW-01 5 176860173 176860173 G A GRK6 Missense_Mutation p.A156T 0.39 tolerated(0.31) possibly_damaging(0.898) TCGA-XK-AAIW-01 5 176860983 176860983 C T GRK6 Silent p.G269G 0.40 TCGA-XK-AAIW-01 5 176911074 176911074 G A PDLIM7 Nonsense_Mutation p.R390* 0.34 TCGA-XK-AAIW-01 5 176939519 176939519 C T DDX41 Missense_Mutation p.M509I 0.33 deleterious(0.02) benign(0.054) TCGA-XK-AAIW-01 5 176943194 176943194 G A DDX41 Missense_Mutation p.A100V 0.42 tolerated(0.28) benign(0.007) TCGA-XK-AAIW-01 5 177059340 177059340 C A RP11-1277A3.2 Intron 0.41 TCGA-XK-AAIW-01 5 177546594 177546594 G T N4BP3 Missense_Mutation p.A4S 0.44 tolerated_low_confidence(0.23) benign(0.067) TCGA-XK-AAIW-01 5 177565184 177565184 G A RMND5B Missense_Mutation p.G22R 0.25 tolerated(0.72) benign(0.009) TCGA-XK-AAIW-01 5 178391870 178391870 C T ZNF454 Silent p.S155S 0.40 TCGA-XK-AAIW-01 5 178392866 178392866 G A ZNF454 Silent p.Q487Q 0.44 TCGA-XK-AAIW-01 5 178410056 178410056 G A GRM6 Missense_Mutation p.T764M 0.43 tolerated(0.21) possibly_damaging(0.595) TCGA-XK-AAIW-01 5 178413417 178413417 G A GRM6 Missense_Mutation p.T613M 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 179034611 179034611 C T RUFY1 Missense_Mutation p.A645V 0.09 tolerated(0.18) probably_damaging(0.999) TCGA-XK-AAIW-01 5 179297286 179297286 C T TBC1D9B Silent p.L898L 0.46 TCGA-XK-AAIW-01 5 179297355 179297355 G T TBC1D9B Silent p.A875A 0.28 TCGA-XK-AAIW-01 5 179740882 179740882 G A GFPT2 Silent p.G452G 0.47 TCGA-XK-AAIW-01 5 180001094 180001094 C T CNOT6 Missense_Mutation p.P523L 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 180036931 180036931 T C FLT4 Missense_Mutation p.T1261A 0.45 tolerated(0.38) benign(0.005) TCGA-XK-AAIW-01 5 180057555 180057555 C A FLT4 Missense_Mutation p.D134Y 0.65 deleterious(0) probably_damaging(0.926) TCGA-XK-AAIW-01 5 180220006 180220006 G A MGAT1 5'UTR 0.50 TCGA-XK-AAIW-01 5 180622224 180622224 C T TRIM7 Missense_Mutation p.R493H 0.25 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 5 1879621 1879621 C T IRX4 Missense_Mutation p.A245T 0.42 tolerated(0.46) benign(0.001) TCGA-XK-AAIW-01 5 21802475 21802475 G T CDH12 Missense_Mutation p.L353I 0.30 tolerated(0.27) benign(0.01) TCGA-XK-AAIW-01 5 228319 228319 G A SDHA Missense_Mutation p.S214N 0.38 tolerated_low_confidence(1) benign(0.001) TCGA-XK-AAIW-01 5 233681 233681 C T SDHA Nonsense_Mutation p.R329* 0.42 TCGA-XK-AAIW-01 5 23522811 23522811 G A PRDM9 Silent p.G233G 0.39 TCGA-XK-AAIW-01 5 23527292 23527292 C T PRDM9 Missense_Mutation p.R699W 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-XK-AAIW-01 5 23527522 23527522 C A PRDM9 Silent p.P775P 0.46 TCGA-XK-AAIW-01 5 26881626 26881626 G A CDH9 Silent p.G663G 0.45 TCGA-XK-AAIW-01 5 26881665 26881665 G A CDH9 Silent p.D650D 0.47 TCGA-XK-AAIW-01 5 31267787 31267787 C T CDH6 Silent p.S69S 0.30 TCGA-XK-AAIW-01 5 31305303 31305303 A C CDH6 Missense_Mutation p.K341T 0.58 tolerated(0.2) benign(0.072) TCGA-XK-AAIW-01 5 31435893 31435893 C T DROSHA Silent p.Q1007Q 0.32 TCGA-XK-AAIW-01 5 31464381 31464381 C T DROSHA Missense_Mutation p.G846R 0.43 deleterious(0) probably_damaging(0.954) TCGA-XK-AAIW-01 5 31551423 31551423 C T C5orf22 Silent p.C361C 0.38 TCGA-XK-AAIW-01 5 32061205 32061205 G A PDZD2 Missense_Mutation p.V806I 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 32126482 32126482 C T GOLPH3 Missense_Mutation p.A245T 0.26 deleterious(0) possibly_damaging(0.764) TCGA-XK-AAIW-01 5 32135758 32135758 A G GOLPH3 Missense_Mutation p.V131A 0.30 tolerated(0.09) benign(0.294) TCGA-XK-AAIW-01 5 32230195 32230195 G A MTMR12 Missense_Mutation p.R645C 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 32390446 32390446 G A ZFR Missense_Mutation p.P693S 0.41 deleterious(0) unknown(0) TCGA-XK-AAIW-01 5 32397417 32397417 G A ZFR Missense_Mutation p.R581W 0.37 deleterious(0) unknown(0) TCGA-XK-AAIW-01 5 33467737 33467737 G A TARS Missense_Mutation p.R732H 0.39 tolerated(0.57) benign(0.009) TCGA-XK-AAIW-01 5 33951686 33951686 T C SLC45A2 Missense_Mutation p.N377D 0.46 tolerated(0.1) probably_damaging(0.99) TCGA-XK-AAIW-01 5 34005919 34005919 G A AMACR Silent p.G111G 0.08 TCGA-XK-AAIW-01 5 34811225 34811225 T C RAI14 Splice_Site p.X189_splice 0.10 TCGA-XK-AAIW-01 5 34814747 34814747 G A RAI14 Silent p.S307S 0.38 TCGA-XK-AAIW-01 5 35876342 35876342 C T IL7R Silent p.D378D 0.44 TCGA-XK-AAIW-01 5 36039601 36039601 C T UGT3A2 Nonsense_Mutation p.W351* 0.33 TCGA-XK-AAIW-01 5 36039662 36039662 C T UGT3A2 Missense_Mutation p.C331Y 0.43 tolerated(0.95) benign(0.044) TCGA-XK-AAIW-01 5 36976503 36976503 A C NIPBL Missense_Mutation p.K498N 0.47 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-XK-AAIW-01 5 37059130 37059130 A T NIPBL Missense_Mutation p.E2516D 0.42 tolerated(0.37) benign(0.015) TCGA-XK-AAIW-01 5 37167160 37167160 G A C5orf42 Silent p.D2463D 0.22 TCGA-XK-AAIW-01 5 37170174 37170174 G A C5orf42 Missense_Mutation p.P2144L 0.44 tolerated(0.3) benign(0.001) TCGA-XK-AAIW-01 5 37176039 37176039 G A C5orf42 Nonsense_Mutation p.Q1984* 0.30 TCGA-XK-AAIW-01 5 37183047 37183047 G A C5orf42 Silent p.L1746L 0.18 TCGA-XK-AAIW-01 5 37185146 37185146 G A C5orf42 Missense_Mutation p.H1409Y 0.38 deleterious(0) probably_damaging(0.953) TCGA-XK-AAIW-01 5 37701190 37701190 G A WDR70 Missense_Mutation p.R408Q 0.41 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 5 37815942 37815942 G A GDNF Silent p.C166C 0.42 TCGA-XK-AAIW-01 5 38407051 38407051 C A EGFLAM Missense_Mutation p.P317H 0.29 deleterious_low_confidence(0.03) benign(0.013) TCGA-XK-AAIW-01 5 38407136 38407136 G A EGFLAM Missense_Mutation p.M345I 0.41 tolerated(0.11) benign(0.004) TCGA-XK-AAIW-01 5 38523624 38523624 A G LIFR Missense_Mutation p.L153S 0.38 deleterious(0.03) probably_damaging(0.998) TCGA-XK-AAIW-01 5 38527391 38527391 C T LIFR Missense_Mutation p.R88H 0.39 tolerated(0.61) benign(0) TCGA-XK-AAIW-01 5 38933358 38933358 G A OSMR Missense_Mutation p.V918M 0.10 deleterious(0.02) possibly_damaging(0.635) TCGA-XK-AAIW-01 5 39202090 39202091 - C FYB Frame_Shift_Ins p.P335Afs*43 0.30 TCGA-XK-AAIW-01 5 39341247 39341247 C T C9 Splice_Site p.X159_splice 0.29 TCGA-XK-AAIW-01 5 40681751 40681751 G A PTGER4 Missense_Mutation p.R219H 0.75 deleterious(0.01) possibly_damaging(0.581) TCGA-XK-AAIW-01 5 40681890 40681890 C T PTGER4 Silent p.G265G 0.14 TCGA-XK-AAIW-01 5 40843385 40843385 C T CARD6 Missense_Mutation p.H139Y 0.15 tolerated(0.78) benign(0.007) TCGA-XK-AAIW-01 5 41203322 41203322 C T C6 Missense_Mutation p.R4H 0.38 tolerated(1) benign(0) TCGA-XK-AAIW-01 5 41794151 41794151 G A OXCT1 Missense_Mutation p.A401V 0.33 deleterious(0) possibly_damaging(0.593) TCGA-XK-AAIW-01 5 41805725 41805725 T C OXCT1 Missense_Mutation p.D300G 0.29 tolerated(0.26) benign(0) TCGA-XK-AAIW-01 5 41917210 41917210 A C C5orf51 Missense_Mutation p.N232H 0.34 tolerated(0.1) benign(0.011) TCGA-XK-AAIW-01 5 424017 424017 C T AHRR Silent p.T215T 0.44 TCGA-XK-AAIW-01 5 44388600 44388600 C T FGF10 Missense_Mutation p.S62N 0.41 tolerated(0.08) benign(0.374) TCGA-XK-AAIW-01 5 447679 447679 G A EXOC3 Missense_Mutation p.R59H 0.50 deleterious(0.02) probably_damaging(0.964) TCGA-XK-AAIW-01 5 45262080 45262080 G T HCN1 Silent p.S872S 0.33 TCGA-XK-AAIW-01 5 457049 457049 C T EXOC3 Silent p.V364V 0.35 TCGA-XK-AAIW-01 5 458033 458033 C A EXOC3 Missense_Mutation p.L395M 0.62 tolerated(0.29) probably_damaging(0.961) TCGA-XK-AAIW-01 5 464517 464517 C T EXOC3 Missense_Mutation p.P589L 0.24 tolerated(0.11) benign(0.003) TCGA-XK-AAIW-01 5 466873 466873 C T EXOC3 Missense_Mutation p.R700C 0.33 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 5 49724057 49724057 C T EMB Silent p.S39S 0.38 TCGA-XK-AAIW-01 5 50137867 50137867 C A PARP8 Missense_Mutation p.L844I 0.33 deleterious(0.02) possibly_damaging(0.54) TCGA-XK-AAIW-01 5 52096504 52096504 G T PELO Missense_Mutation p.E92D 0.50 tolerated(0.33) benign(0.02) TCGA-XK-AAIW-01 5 52096778 52096778 C T PELO Missense_Mutation p.R184W 0.30 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 5 52201708 52201708 C T ITGA1 Silent p.I475I 0.37 TCGA-XK-AAIW-01 5 52206155 52206155 A G ITGA1 Missense_Mutation p.D588G 0.38 deleterious(0) probably_damaging(0.936) TCGA-XK-AAIW-01 5 52344197 52344197 G A ITGA2 Missense_Mutation p.C131Y 0.51 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 5235199 5235199 C T ADAMTS16 Silent p.P641P 0.44 TCGA-XK-AAIW-01 5 5237184 5237184 G A ADAMTS16 Missense_Mutation p.R709H 0.30 tolerated(0.35) benign(0.006) TCGA-XK-AAIW-01 5 5303789 5303789 C T ADAMTS16 Silent p.S1032S 0.16 TCGA-XK-AAIW-01 5 5319178 5319178 C G ADAMTS16 Missense_Mutation p.P1201R 0.40 deleterious(0) probably_damaging(0.965) TCGA-XK-AAIW-01 5 54275236 54275236 T A ESM1 Missense_Mutation p.N160I 0.41 deleterious(0) possibly_damaging(0.714) TCGA-XK-AAIW-01 5 54439343 54439343 G A CDC20B Nonsense_Mutation p.Q162* 0.17 TCGA-XK-AAIW-01 5 54570759 54570759 G A DHX29 Missense_Mutation p.A836V 0.44 tolerated(0.78) benign(0.023) TCGA-XK-AAIW-01 5 5461107 5461107 A - KIAA0947 Frame_Shift_Del p.M555* 0.34 TCGA-XK-AAIW-01 5 54706457 54706457 T A SKIV2L2 Missense_Mutation p.N917K 0.07 tolerated(1) benign(0.004) TCGA-XK-AAIW-01 5 5473844 5473844 G A KIAA0947 Silent p.T2132T 0.38 TCGA-XK-AAIW-01 5 55195937 55195937 G T IL31RA Missense_Mutation p.R349M 0.37 deleterious(0) probably_damaging(0.96) TCGA-XK-AAIW-01 5 55204233 55204233 G T IL31RA Nonsense_Mutation p.G499* 0.38 TCGA-XK-AAIW-01 5 56171129 56171129 G A MAP3K1 Missense_Mutation p.A653T 0.19 tolerated(0.21) possibly_damaging(0.493) TCGA-XK-AAIW-01 5 56176631 56176631 T C MAP3K1 Splice_Site p.X727_splice 0.15 TCGA-XK-AAIW-01 5 56177976 56177976 G A MAP3K1 Silent p.L983L 0.50 TCGA-XK-AAIW-01 5 56183331 56183331 C T MAP3K1 Missense_Mutation p.A1414V 0.11 deleterious(0.02) probably_damaging(0.988) TCGA-XK-AAIW-01 5 56777308 56777308 G A ACTBL2 3'UTR 0.73 TCGA-XK-AAIW-01 5 56777946 56777946 G A ACTBL2 Nonsense_Mutation p.R197* 0.52 TCGA-XK-AAIW-01 5 57751419 57751419 G A PLK2 Silent p.T524T 0.19 TCGA-XK-AAIW-01 5 57753106 57753106 G A PLK2 Silent p.L304L 0.58 TCGA-XK-AAIW-01 5 59941425 59941425 G A DEPDC1B Missense_Mutation p.R158C 0.18 deleterious(0.02) probably_damaging(0.932) TCGA-XK-AAIW-01 5 61802186 61802186 T C IPO11 Splice_Site p.X634_splice 0.60 TCGA-XK-AAIW-01 5 620335 620335 G A CEP72 Missense_Mutation p.R121H 0.47 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 63871674 63871674 A G RGS7BP Missense_Mutation p.T136A 0.37 tolerated(0.45) unknown(0) TCGA-XK-AAIW-01 5 65344584 65344584 C T ERBB2IP Silent p.V626V 0.41 TCGA-XK-AAIW-01 5 65372215 65372215 C T ERBB2IP Silent p.N1352N 0.36 TCGA-XK-AAIW-01 5 65470839 65470839 G A SREK1 Missense_Mutation p.R517K 0.35 tolerated_low_confidence(0.2) unknown(0) TCGA-XK-AAIW-01 5 65474638 65474638 A G SREK1 Missense_Mutation p.H606R 0.50 deleterious_low_confidence(0.01) unknown(0) TCGA-XK-AAIW-01 5 6605395 6605395 C T NSUN2 Silent p.E576E 0.36 TCGA-XK-AAIW-01 5 66460263 66460263 C T MAST4 Silent p.A1752A 0.19 TCGA-XK-AAIW-01 5 66461160 66461160 G A MAST4 Silent p.A2051A 0.36 TCGA-XK-AAIW-01 5 6754936 6754936 G A PAPD7 Missense_Mutation p.G503S 0.43 tolerated_low_confidence(0.56) benign(0.009) TCGA-XK-AAIW-01 5 68410309 68410309 G A SLC30A5 Missense_Mutation p.V200M 0.42 tolerated(0.17) possibly_damaging(0.753) TCGA-XK-AAIW-01 5 68670493 68670493 C T RAD17 Silent p.V113V 0.40 TCGA-XK-AAIW-01 5 68692341 68692341 C T RAD17 Missense_Mutation p.H525Y 0.31 deleterious(0.02) possibly_damaging(0.517) TCGA-XK-AAIW-01 5 68862428 68862428 C T GTF2H2C Silent p.H49H 0.14 TCGA-XK-AAIW-01 5 68902961 68902961 G T RP11-848G14.2 RNA 0.10 TCGA-XK-AAIW-01 5 70791091 70791091 C T BDP1 Missense_Mutation p.A552V 0.30 tolerated(0.23) benign(0.037) TCGA-XK-AAIW-01 5 71492735 71492735 G A MAP1B Missense_Mutation p.G1185R 0.57 probably_damaging(1) TCGA-XK-AAIW-01 5 71495575 71495575 G A MAP1B Silent p.P2131P 0.39 TCGA-XK-AAIW-01 5 71752270 71752270 G A ZNF366 Silent p.H495H 0.44 TCGA-XK-AAIW-01 5 71756333 71756333 G A ZNF366 Missense_Mutation p.H331Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 72183988 72183988 C T TNPO1 Missense_Mutation p.R463C 0.27 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 74324764 74324764 G A GCNT4 Missense_Mutation p.R367C 0.10 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 74676896 74676896 C T COL4A3BP Splice_Site p.X711_splice 0.34 TCGA-XK-AAIW-01 5 74981187 74981187 G A POC5 Missense_Mutation p.P418S 0.33 tolerated(0.28) probably_damaging(0.986) TCGA-XK-AAIW-01 5 75989260 75989260 C T IQGAP2 Missense_Mutation p.A1329V 0.10 tolerated(0.23) benign(0.004) TCGA-XK-AAIW-01 5 76129237 76129237 C A F2RL1 Missense_Mutation p.L269M 0.36 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 76129692 76129692 G A F2RL1 3'UTR 0.32 TCGA-XK-AAIW-01 5 76259283 76259283 C T CRHBP Missense_Mutation p.P270L 0.39 tolerated(0.34) benign(0.254) TCGA-XK-AAIW-01 5 7706925 7706925 G A ADCY2 Missense_Mutation p.C393Y 0.30 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 7826973 7826973 G A ADCY2 Missense_Mutation p.V1089M 0.37 tolerated_low_confidence(0.33) benign(0.018) TCGA-XK-AAIW-01 5 78329225 78329225 G A DMGDH Silent p.G400G 0.48 TCGA-XK-AAIW-01 5 78417174 78417174 G A BHMT Missense_Mutation p.R204H 0.40 deleterious(0) benign(0.408) TCGA-XK-AAIW-01 5 78421875 78421875 C T BHMT Missense_Mutation p.S211F 0.39 deleterious(0) benign(0.042) TCGA-XK-AAIW-01 5 7869309 7869309 G A MTRR Intron 0.09 TCGA-XK-AAIW-01 5 78746842 78746842 C T HOMER1 Missense_Mutation p.G89R 0.40 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 5 78808616 78808616 G A HOMER1 5'UTR 0.37 TCGA-XK-AAIW-01 5 79028741 79028741 C T CMYA5 Missense_Mutation p.R1385C 0.33 benign(0.348) TCGA-XK-AAIW-01 5 79031252 79031252 A G CMYA5 Missense_Mutation p.T2222A 0.48 benign(0.001) TCGA-XK-AAIW-01 5 79378293 79378293 C T THBS4 Missense_Mutation p.R917C 0.19 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 5 79733372 79733372 G A ZFYVE16 Missense_Mutation p.A290T 0.51 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 5 79924946 79924946 C T DHFR Missense_Mutation p.G175D 0.39 tolerated(0.07) benign(0.185) TCGA-XK-AAIW-01 5 79952260 79952260 C T MSH3 Missense_Mutation p.P90S 0.39 tolerated_low_confidence(0.46) benign(0.007) TCGA-XK-AAIW-01 5 80160761 80160761 G T MSH3 Missense_Mutation p.G1044C 0.41 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 5 80366295 80366295 C T RASGRF2 Intron 0.22 TCGA-XK-AAIW-01 5 80369158 80369158 C T RASGRF2 Silent p.Y258Y 0.16 TCGA-XK-AAIW-01 5 80504231 80504231 A G RASGRF2 Missense_Mutation p.M1044V 0.21 tolerated(0.06) benign(0.011) TCGA-XK-AAIW-01 5 82789511 82789511 G A VCAN Missense_Mutation p.A198T 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 5 83259056 83259056 C T EDIL3 Missense_Mutation p.V421I 0.11 tolerated(0.44) benign(0.006) TCGA-XK-AAIW-01 5 85578743 85578743 A G NBPF22P RNA 0.29 TCGA-XK-AAIW-01 5 86672218 86672218 C T RASA1 Missense_Mutation p.R674C 0.34 tolerated(0.18) benign(0.003) TCGA-XK-AAIW-01 5 88119602 88119602 C T MEF2C Missense_Mutation p.G2R 0.29 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 5 89814725 89814725 G A LYSMD3 Missense_Mutation p.P278S 0.44 tolerated(0.08) possibly_damaging(0.529) TCGA-XK-AAIW-01 5 89938497 89938497 G A GPR98 Missense_Mutation p.R762H 0.33 possibly_damaging(0.457) TCGA-XK-AAIW-01 5 90144541 90144541 C T GPR98 Missense_Mutation p.R5703C 0.50 possibly_damaging(0.876) TCGA-XK-AAIW-01 5 90159576 90159576 C A GPR98 Missense_Mutation p.L5920I 0.36 possibly_damaging(0.874) TCGA-XK-AAIW-01 5 9052014 9052014 G A SEMA5A Missense_Mutation p.P939L 0.45 tolerated(0.1) benign(0.375) TCGA-XK-AAIW-01 5 9224815 9224815 G A SEMA5A Missense_Mutation p.T206M 0.44 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 5 93077201 93077201 C T POU5F2 Silent p.G23G 0.42 TCGA-XK-AAIW-01 5 93217230 93217230 A G FAM172A Silent p.Y244Y 0.33 TCGA-XK-AAIW-01 5 94903715 94903715 T C ARSK Silent p.F126F 0.28 TCGA-XK-AAIW-01 5 95091127 95091127 C T RHOBTB3 Missense_Mutation p.A237V 0.37 tolerated(0.11) possibly_damaging(0.878) TCGA-XK-AAIW-01 5 95091344 95091344 C G RHOBTB3 Missense_Mutation p.N309K 0.39 tolerated(0.79) benign(0.004) TCGA-XK-AAIW-01 5 95158367 95158367 G A GLRX 5'UTR 0.24 TCGA-XK-AAIW-01 5 95730639 95730639 G A PCSK1 Missense_Mutation p.R605C 0.40 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 5 96119711 96119711 C T ERAP1 Missense_Mutation p.V673M 0.36 deleterious(0) probably_damaging(0.911) TCGA-XK-AAIW-01 5 96315335 96315335 C T LNPEP Silent p.A171A 0.42 TCGA-XK-AAIW-01 5 98128863 98128863 G A RGMB Silent p.P281P 0.53 TCGA-XK-AAIW-01 5 98192225 98192225 C T CHD1 Nonsense_Mutation p.W1664* 0.09 TCGA-XK-AAIW-01 5 98192375 98192375 A G CHD1 Silent p.D1614D 0.33 TCGA-XK-AAIW-01 5 98195690 98195690 G A CHD1 Missense_Mutation p.R1504W 0.33 deleterious(0) possibly_damaging(0.898) TCGA-XK-AAIW-01 6 100895199 100895199 G A SIM1 Missense_Mutation p.H315Y 0.16 tolerated(0.26) probably_damaging(0.999) TCGA-XK-AAIW-01 6 10398603 10398603 C T TFAP2A 3'UTR 0.37 TCGA-XK-AAIW-01 6 10430531 10430531 C T LINC00518 RNA 0.31 TCGA-XK-AAIW-01 6 105231961 105231961 C A HACE1 Missense_Mutation p.Q522H 0.26 deleterious(0) possibly_damaging(0.707) TCGA-XK-AAIW-01 6 106727655 106727655 G A ATG5 Missense_Mutation p.A120V 0.21 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 6 107854672 107854672 T G SOBP Missense_Mutation p.V144G 0.36 tolerated(0.08) possibly_damaging(0.578) TCGA-XK-AAIW-01 6 107955408 107955408 C T SOBP Missense_Mutation p.P454S 0.32 tolerated(0.07) possibly_damaging(0.728) TCGA-XK-AAIW-01 6 108243079 108243079 C T SEC63 Missense_Mutation p.R125H 0.38 tolerated(0.12) benign(0.344) TCGA-XK-AAIW-01 6 108798484 108798484 C T LACE1 Silent p.L351L 0.32 TCGA-XK-AAIW-01 6 108984784 108984784 C T FOXO3 Missense_Mutation p.R250W 0.16 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 109321872 109321872 G A SESN1 Missense_Mutation p.A184V 0.37 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 109699120 109699120 G A CD164 Missense_Mutation p.T105M 0.45 tolerated(0.12) benign(0.016) TCGA-XK-AAIW-01 6 109775015 109775015 G A MICAL1 Missense_Mutation p.R98W 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 110146479 110146479 G T FIG4 3'UTR 0.39 TCGA-XK-AAIW-01 6 111288819 111288819 C T GTF3C6 Silent p.A156A 0.42 TCGA-XK-AAIW-01 6 111685066 111685066 G A REV3L Missense_Mutation p.A2290V 0.27 tolerated(0.06) probably_damaging(0.947) TCGA-XK-AAIW-01 6 111694060 111694060 G A REV3L Missense_Mutation p.A1833V 0.39 tolerated_low_confidence(0.16) benign(0.16) TCGA-XK-AAIW-01 6 111695045 111695045 C A REV3L Missense_Mutation p.A1505S 0.35 tolerated_low_confidence(0.21) benign(0.006) TCGA-XK-AAIW-01 6 111726774 111726774 G A REV3L Missense_Mutation p.A155V 0.41 deleterious(0) probably_damaging(0.949) TCGA-XK-AAIW-01 6 111880685 111880685 G A TRAF3IP2 Silent p.L541L 0.48 TCGA-XK-AAIW-01 6 111896846 111896846 G A TRAF3IP2 Missense_Mutation p.R401W 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 112386138 112386138 A G WISP3 Missense_Mutation p.Q194R 0.44 tolerated(0.12) benign(0.009) TCGA-XK-AAIW-01 6 112440445 112440445 G A LAMA4 Missense_Mutation p.L1579F 0.46 tolerated(0.53) benign(0.03) TCGA-XK-AAIW-01 6 112443257 112443257 G A LAMA4 Missense_Mutation p.R1479C 0.33 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 6 114267235 114267235 G T HDAC2 Missense_Mutation p.R307S 0.39 deleterious(0) probably_damaging(0.933) TCGA-XK-AAIW-01 6 116432053 116432053 G A NT5DC1 Missense_Mutation p.A100T 0.16 tolerated(0.71) benign(0.005) TCGA-XK-AAIW-01 6 116442996 116442996 C A COL10A1 Missense_Mutation p.G95W 0.46 deleterious(0) unknown(0) TCGA-XK-AAIW-01 6 116836953 116836954 - T FAM26E Frame_Shift_Ins p.E247* 0.16 TCGA-XK-AAIW-01 6 117043316 117043316 C T KPNA5 Nonsense_Mutation p.R262* 0.30 TCGA-XK-AAIW-01 6 11714746 11714746 C A ADTRP Splice_Site p.X238_splice 0.55 TCGA-XK-AAIW-01 6 117642475 117642475 C T ROS1 Silent p.E1908E 0.40 TCGA-XK-AAIW-01 6 11768593 11768593 C T ADTRP Silent p.G77G 0.33 TCGA-XK-AAIW-01 6 118832471 118832471 G A CEP85L Missense_Mutation p.A419V 0.10 tolerated(0.35) benign(0.005) TCGA-XK-AAIW-01 6 118880187 118880187 T G PLN Missense_Mutation p.F35V 0.43 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-XK-AAIW-01 6 119295631 119295631 G A FAM184A Silent p.N959N 0.37 TCGA-XK-AAIW-01 6 119324195 119324195 G A FAM184A Missense_Mutation p.R653C 0.35 deleterious(0) probably_damaging(0.969) TCGA-XK-AAIW-01 6 119327242 119327242 G T FAM184A Intron 0.44 TCGA-XK-AAIW-01 6 12125469 12125469 A - HIVEP1 Frame_Shift_Del p.K1815Rfs*16 0.15 TCGA-XK-AAIW-01 6 123600201 123600201 G A TRDN Nonsense_Mutation p.Q513* 0.35 TCGA-XK-AAIW-01 6 127796803 127796803 G A SOGA3 Missense_Mutation p.R790C 0.35 deleterious(0.01) benign(0.031) TCGA-XK-AAIW-01 6 127797040 127797040 G A SOGA3 Nonsense_Mutation p.Q711* 0.46 TCGA-XK-AAIW-01 6 127797548 127797548 C A SOGA3 Missense_Mutation p.K541N 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 6 128134372 128134372 C T THEMIS Missense_Mutation p.V472M 0.34 deleterious(0.04) possibly_damaging(0.686) TCGA-XK-AAIW-01 6 128294914 128294914 C T PTPRK Missense_Mutation p.R1349Q 0.47 tolerated(0.17) probably_damaging(0.975) TCGA-XK-AAIW-01 6 128304058 128304058 A G PTPRK Missense_Mutation p.V1158A 0.33 tolerated(0.9) benign(0.034) TCGA-XK-AAIW-01 6 129837346 129837346 C T LAMA2 Nonsense_Mutation p.Q3075* 0.33 TCGA-XK-AAIW-01 6 129899715 129899715 C A ARHGAP18 Missense_Mutation p.K645N 0.42 tolerated(0.06) benign(0.197) TCGA-XK-AAIW-01 6 130376384 130376384 G A L3MBTL3 Silent p.S217S 0.60 TCGA-XK-AAIW-01 6 130387534 130387534 T C L3MBTL3 Missense_Mutation p.Y301H 0.40 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 130761877 130761877 G A TMEM200A Missense_Mutation p.V104I 0.31 tolerated(0.35) benign(0.018) TCGA-XK-AAIW-01 6 131222276 131222276 C T EPB41L2 Missense_Mutation p.R325H 0.37 deleterious(0.02) benign(0.003) TCGA-XK-AAIW-01 6 131904532 131904532 G A ARG1 Missense_Mutation p.G243R 0.37 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 6 131921245 131921245 G A MED23 Missense_Mutation p.T718I 0.44 tolerated(0.05) possibly_damaging(0.721) TCGA-XK-AAIW-01 6 132030107 132030107 G A CTAGE9 Missense_Mutation p.A684V 0.15 deleterious(0.03) possibly_damaging(0.482) TCGA-XK-AAIW-01 6 133078827 133078827 T C VNN2 Missense_Mutation p.K66E 0.41 tolerated(0.15) benign(0.094) TCGA-XK-AAIW-01 6 133783834 133783834 G A EYA4 Missense_Mutation p.C219Y 0.38 tolerated(0.35) probably_damaging(0.974) TCGA-XK-AAIW-01 6 134491490 134491490 G A SGK1 Silent p.S499S 0.27 TCGA-XK-AAIW-01 6 134492174 134492174 G A SGK1 Missense_Mutation p.A437V 0.45 tolerated(0.11) benign(0.09) TCGA-XK-AAIW-01 6 135263570 135263570 G A ALDH8A1 Missense_Mutation p.T140M 0.08 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 6 135265038 135265038 G A ALDH8A1 Missense_Mutation p.R69C 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 135639719 135639719 G A AHI1 Nonsense_Mutation p.R1122* 0.47 TCGA-XK-AAIW-01 6 135769461 135769461 G A AHI1 Silent p.Y531Y 0.33 TCGA-XK-AAIW-01 6 13644886 13644886 C T RANBP9 Missense_Mutation p.V335M 0.39 tolerated(0.13) probably_damaging(0.994) TCGA-XK-AAIW-01 6 136590580 136590580 A G BCLAF1 Silent p.D738D 0.29 TCGA-XK-AAIW-01 6 136599627 136599627 C A BCLAF1 Missense_Mutation p.R131L 0.21 tolerated_low_confidence(0.06) unknown(0) TCGA-XK-AAIW-01 6 136683812 136683812 G T MAP7 Silent p.A456A 0.35 TCGA-XK-AAIW-01 6 136972228 136972228 A G MAP3K5 Missense_Mutation p.V561A 0.38 deleterious(0.01) probably_damaging(0.985) TCGA-XK-AAIW-01 6 137245294 137245294 C T SLC35D3 Silent p.C237C 0.47 TCGA-XK-AAIW-01 6 137323047 137323047 G A IL20RA Missense_Mutation p.A437V 0.16 deleterious(0.04) benign(0.436) TCGA-XK-AAIW-01 6 138413380 138413380 T C PERP Silent p.V127V 0.15 TCGA-XK-AAIW-01 6 138539134 138539134 C T PBOV1 Silent p.Q133Q 0.44 TCGA-XK-AAIW-01 6 138584445 138584445 G A KIAA1244 Missense_Mutation p.D609N 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-XK-AAIW-01 6 138607990 138607990 C T KIAA1244 Missense_Mutation p.R908W 0.41 deleterious(0) probably_damaging(0.924) TCGA-XK-AAIW-01 6 138655389 138655389 C T KIAA1244 Silent p.G1802G 0.36 TCGA-XK-AAIW-01 6 139183810 139183810 G A ECT2L Silent p.T415T 0.47 TCGA-XK-AAIW-01 6 139266738 139266738 G A REPS1 Missense_Mutation p.S125L 0.45 tolerated(0.48) benign(0.005) TCGA-XK-AAIW-01 6 139488332 139488332 G A HECA Missense_Mutation p.V395M 0.37 tolerated(0.19) benign(0.268) TCGA-XK-AAIW-01 6 142396969 142396969 C T NMBR Missense_Mutation p.S330N 0.34 deleterious(0.02) possibly_damaging(0.791) TCGA-XK-AAIW-01 6 143081568 143081568 C T HIVEP2 Missense_Mutation p.V1953I 0.24 tolerated(0.23) benign(0.004) TCGA-XK-AAIW-01 6 143092710 143092710 G A HIVEP2 Silent p.L1056L 0.56 TCGA-XK-AAIW-01 6 143092937 143092937 G A HIVEP2 Missense_Mutation p.S980F 0.34 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 6 143094585 143094585 G A HIVEP2 Missense_Mutation p.R431W 0.35 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 144508076 144508076 G A STX11 Silent p.L104L 0.41 TCGA-XK-AAIW-01 6 144508226 144508226 C T STX11 Silent p.R154R 0.33 TCGA-XK-AAIW-01 6 144508686 144508686 G A STX11 3'UTR 0.53 TCGA-XK-AAIW-01 6 144809945 144809945 C A UTRN Missense_Mutation p.A1370D 0.48 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 144838070 144838070 T C UTRN Missense_Mutation p.Y1843H 0.50 tolerated(0.37) benign(0.011) TCGA-XK-AAIW-01 6 144999598 144999598 C T UTRN Silent p.N2512N 0.30 TCGA-XK-AAIW-01 6 145069579 145069579 G A UTRN Missense_Mutation p.V2713M 0.39 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 6 146126587 146126587 C T FBXO30 Missense_Mutation p.A319T 0.51 tolerated(0.36) benign(0.046) TCGA-XK-AAIW-01 6 146266673 146266673 G A SHPRH Silent p.Y474Y 0.09 TCGA-XK-AAIW-01 6 146350586 146350586 G A GRM1 5'UTR 0.28 TCGA-XK-AAIW-01 6 146755582 146755582 C T GRM1 Missense_Mutation p.P1079S 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.792) TCGA-XK-AAIW-01 6 146865059 146865059 G A RAB32 Missense_Mutation p.A18T 0.32 tolerated(0.25) unknown(0) TCGA-XK-AAIW-01 6 147637445 147637445 C A STXBP5 Silent p.P568P 0.42 TCGA-XK-AAIW-01 6 147648402 147648402 G T STXBP5 Missense_Mutation p.Q690H 0.36 deleterious(0.01) benign(0.269) TCGA-XK-AAIW-01 6 148865629 148865629 G A SASH1 Missense_Mutation p.S1008N 0.27 tolerated_low_confidence(0.26) benign(0.051) TCGA-XK-AAIW-01 6 149826637 149826637 G A PPIL4 Silent p.S477S 0.34 TCGA-XK-AAIW-01 6 150239453 150239453 G A RAET1G Silent p.C233C 0.29 TCGA-XK-AAIW-01 6 150267638 150267638 G A ULBP2 Silent p.T160T 0.35 TCGA-XK-AAIW-01 6 150719366 150719366 C T IYD 3'UTR 0.28 TCGA-XK-AAIW-01 6 151130361 151130361 G A PLEKHG1 Missense_Mutation p.D345N 0.36 deleterious(0) possibly_damaging(0.614) TCGA-XK-AAIW-01 6 151247370 151247370 C T MTHFD1L Missense_Mutation p.R399C 0.46 tolerated(0.08) benign(0.013) TCGA-XK-AAIW-01 6 151355736 151355736 G T MTHFD1L Missense_Mutation p.Q898H 0.46 deleterious(0.01) possibly_damaging(0.837) TCGA-XK-AAIW-01 6 151671538 151671538 G A AKAP12 Missense_Mutation p.R671H 0.14 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 151686671 151686671 G A ZBTB2 Silent p.T510T 0.39 TCGA-XK-AAIW-01 6 151744681 151744681 A G RMND1 Missense_Mutation p.S306P 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 151766709 151766709 G A RMND1 Silent p.L80L 0.09 TCGA-XK-AAIW-01 6 151869452 151869452 G A CCDC170 Missense_Mutation p.R201H 0.31 tolerated(0.33) benign(0.001) TCGA-XK-AAIW-01 6 152469194 152469194 G A SYNE1 Missense_Mutation p.A8321V 0.45 possibly_damaging(0.766) TCGA-XK-AAIW-01 6 152473249 152473249 G T SYNE1 Missense_Mutation p.L8053M 0.34 probably_damaging(0.996) TCGA-XK-AAIW-01 6 152477120 152477120 G T SYNE1 Missense_Mutation p.S7968Y 0.14 probably_damaging(0.998) TCGA-XK-AAIW-01 6 152637993 152637993 A G SYNE1 Silent p.I5567I 0.43 TCGA-XK-AAIW-01 6 152674874 152674874 C T SYNE1 Nonsense_Mutation p.W3644* 0.34 TCGA-XK-AAIW-01 6 152676013 152676013 G A SYNE1 Silent p.D3569D 0.45 TCGA-XK-AAIW-01 6 152686088 152686088 C T SYNE1 Missense_Mutation p.V3347I 0.34 benign(0.009) TCGA-XK-AAIW-01 6 152718015 152718015 C T SYNE1 Missense_Mutation p.S2484N 0.14 benign(0.001) TCGA-XK-AAIW-01 6 152730298 152730298 C T SYNE1 Missense_Mutation p.G2149R 0.38 possibly_damaging(0.851) TCGA-XK-AAIW-01 6 152749493 152749493 G A SYNE1 Missense_Mutation p.A1608V 0.34 benign(0.001) TCGA-XK-AAIW-01 6 152771925 152771925 C A SYNE1 Missense_Mutation p.R1077M 0.23 probably_damaging(0.998) TCGA-XK-AAIW-01 6 152774700 152774700 C A SYNE1 Intron 0.10 TCGA-XK-AAIW-01 6 153042909 153042909 G A MYCT1 Missense_Mutation p.A77T 0.40 tolerated(0.09) benign(0.088) TCGA-XK-AAIW-01 6 153296250 153296250 T C FBXO5 Missense_Mutation p.T204A 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 6 15496663 15496663 G A JARID2 Missense_Mutation p.A403T 0.43 deleterious_low_confidence(0.03) benign(0.002) TCGA-XK-AAIW-01 6 15497052 15497052 C T JARID2 Silent p.S532S 0.29 TCGA-XK-AAIW-01 6 15512454 15512454 C T JARID2 Silent p.L990L 0.38 TCGA-XK-AAIW-01 6 155451307 155451307 G A TIAM2 Missense_Mutation p.R317H 0.21 tolerated(0.12) benign(0.39) TCGA-XK-AAIW-01 6 155581523 155581523 G A TFB1M Silent p.G226G 0.41 TCGA-XK-AAIW-01 6 155776897 155776897 G A NOX3 Missense_Mutation p.T13I 0.39 tolerated(1) benign(0) TCGA-XK-AAIW-01 6 15638018 15638018 G A DTNBP1 Missense_Mutation p.A60V 0.37 tolerated(1) possibly_damaging(0.713) TCGA-XK-AAIW-01 6 157469870 157469870 C T ARID1B Silent p.S888S 0.51 TCGA-XK-AAIW-01 6 157502140 157502140 C T ARID1B Missense_Mutation p.T1058M 0.25 probably_damaging(0.961) TCGA-XK-AAIW-01 6 157522284 157522284 G A ARID1B Missense_Mutation p.R1519H 0.48 probably_damaging(0.997) TCGA-XK-AAIW-01 6 157527546 157527546 C T ARID1B Silent p.S1757S 0.34 TCGA-XK-AAIW-01 6 158093781 158093781 G A ZDHHC14 Missense_Mutation p.S365N 0.38 tolerated(0.16) benign(0.276) TCGA-XK-AAIW-01 6 158571515 158571515 T G SERAC1 Missense_Mutation p.T79P 0.33 tolerated(0.19) benign(0.004) TCGA-XK-AAIW-01 6 158870174 158870174 C T TULP4 Silent p.S230S 0.39 TCGA-XK-AAIW-01 6 158902117 158902117 G T TULP4 Missense_Mutation p.D428Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 159029451 159029451 C A TMEM181 Missense_Mutation p.L391M 0.30 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 6 159129420 159129420 C T SYTL3 Silent p.G171G 0.17 TCGA-XK-AAIW-01 6 159403613 159403613 C T RSPH3 Silent p.L342L 0.36 TCGA-XK-AAIW-01 6 159457259 159457259 G A TAGAP Missense_Mutation p.A599V 0.47 deleterious(0) probably_damaging(0.979) TCGA-XK-AAIW-01 6 159653200 159653200 G A FNDC1 Silent p.S552S 0.33 TCGA-XK-AAIW-01 6 160221714 160221714 C T PNLDC1 5'UTR 0.44 TCGA-XK-AAIW-01 6 160482960 160482960 G A IGF2R Silent p.S1194S 0.32 TCGA-XK-AAIW-01 6 160662547 160662547 C T SLC22A2 Missense_Mutation p.R487Q 0.45 deleterious(0) probably_damaging(0.957) TCGA-XK-AAIW-01 6 160908419 160908419 G A LPAL2 RNA 0.37 TCGA-XK-AAIW-01 6 160969576 160969576 C A LPA Nonsense_Mutation p.E1697* 0.38 TCGA-XK-AAIW-01 6 161134081 161134081 C T PLG Silent p.N157N 0.36 TCGA-XK-AAIW-01 6 161160103 161160103 C T PLG Silent p.S627S 0.08 TCGA-XK-AAIW-01 6 1612302 1612302 G A FOXC1 Missense_Mutation p.R541H 0.33 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 6 161505568 161505568 G A MAP3K4 Missense_Mutation p.S764N 0.33 tolerated(0.33) benign(0.039) TCGA-XK-AAIW-01 6 161519348 161519348 G A MAP3K4 Missense_Mutation p.S1188N 0.34 tolerated(0.11) benign(0.002) TCGA-XK-AAIW-01 6 161575257 161575257 G A AGPAT4 Missense_Mutation p.S145L 0.47 deleterious(0.01) benign(0.105) TCGA-XK-AAIW-01 6 16254845 16254845 G A GMPR Missense_Mutation p.S115N 0.16 tolerated(0.52) benign(0.007) TCGA-XK-AAIW-01 6 162622177 162622177 G A PARK2 Missense_Mutation p.L174F 0.44 tolerated(0.37) probably_damaging(0.983) TCGA-XK-AAIW-01 6 162622263 162622263 C A PARK2 Missense_Mutation p.S145I 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-XK-AAIW-01 6 162864373 162864373 C T PARK2 Missense_Mutation p.G47E 0.16 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 163235234 163235234 C T PACRG Missense_Mutation p.A71V 0.15 tolerated(0.19) benign(0.063) TCGA-XK-AAIW-01 6 16328510 16328510 C T ATXN1 Missense_Mutation p.C11Y 0.42 deleterious(0) possibly_damaging(0.804) TCGA-XK-AAIW-01 6 165711580 165711580 G A C6orf118 Missense_Mutation p.A316V 0.31 tolerated(0.09) possibly_damaging(0.804) TCGA-XK-AAIW-01 6 165749679 165749679 C T PDE10A Missense_Mutation p.A734T 0.24 deleterious(0.01) possibly_damaging(0.857) TCGA-XK-AAIW-01 6 165756961 165756961 G T PDE10A Silent p.A672A 0.42 TCGA-XK-AAIW-01 6 165801936 165801936 C A PDE10A Nonsense_Mutation p.G555* 0.35 TCGA-XK-AAIW-01 6 166578323 166578323 A G T Silent p.N211N 0.34 TCGA-XK-AAIW-01 6 166780295 166780295 G A MPC1 Missense_Mutation p.R54W 0.34 deleterious(0) benign(0.245) TCGA-XK-AAIW-01 6 166827379 166827379 C T RPS6KA2 Missense_Mutation p.R668H 0.46 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 166831754 166831754 G T RPS6KA2 Missense_Mutation p.L641I 0.42 deleterious(0.04) benign(0.095) TCGA-XK-AAIW-01 6 166844001 166844001 G A RPS6KA2 Silent p.R515R 0.09 TCGA-XK-AAIW-01 6 167416734 167416734 C T FGFR1OP Silent p.D70D 0.23 TCGA-XK-AAIW-01 6 168281192 168281192 G A MLLT4 Missense_Mutation p.A298T 0.35 tolerated(0.13) possibly_damaging(0.617) TCGA-XK-AAIW-01 6 168316027 168316027 C T MLLT4 Missense_Mutation p.R820C 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 168461456 168461456 G A FRMD1 Missense_Mutation p.R443C 0.32 tolerated(0.25) benign(0) TCGA-XK-AAIW-01 6 169626362 169626362 G A THBS2 Silent p.Y817Y 0.36 TCGA-XK-AAIW-01 6 169642042 169642042 C T THBS2 Missense_Mutation p.A236T 0.42 tolerated_low_confidence(0.67) benign(0.003) TCGA-XK-AAIW-01 6 170105319 170105319 G A PHF10 Nonsense_Mutation p.Q441* 0.45 TCGA-XK-AAIW-01 6 170169676 170169676 G A ERMARD Missense_Mutation p.R367H 0.09 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 170181436 170181436 T C ERMARD Missense_Mutation p.S622P 0.26 deleterious(0.04) possibly_damaging(0.649) TCGA-XK-AAIW-01 6 170592397 170592397 G A DLL1 Missense_Mutation p.A657V 0.39 tolerated(0.25) benign(0.018) TCGA-XK-AAIW-01 6 170594658 170594658 C A DLL1 Missense_Mutation p.Q287H 0.38 deleterious(0.02) probably_damaging(0.99) TCGA-XK-AAIW-01 6 170594702 170594702 G A DLL1 Nonsense_Mutation p.Q273* 0.45 TCGA-XK-AAIW-01 6 170626692 170626692 C T FAM120B Nonsense_Mutation p.R72* 0.38 TCGA-XK-AAIW-01 6 17662249 17662249 C A NUP153 Missense_Mutation p.S423I 0.39 deleterious(0.03) possibly_damaging(0.898) TCGA-XK-AAIW-01 6 17761052 17761052 G A KIF13A 3'Flank 0.21 TCGA-XK-AAIW-01 6 17837806 17837806 G A KIF13A Missense_Mutation p.T280I 0.44 deleterious(0) possibly_damaging(0.858) TCGA-XK-AAIW-01 6 17856307 17856307 T - KIF13A Frame_Shift_Del p.A90Pfs*23 0.11 TCGA-XK-AAIW-01 6 18212817 18212817 C T KDM1B Silent p.G423G 0.18 TCGA-XK-AAIW-01 6 20102425 20102425 C T MBOAT1 3'UTR 0.44 TCGA-XK-AAIW-01 6 20124743 20124743 A G MBOAT1 Missense_Mutation p.V268A 0.31 tolerated(0.27) benign(0.019) TCGA-XK-AAIW-01 6 22290546 22290546 G A PRL Nonsense_Mutation p.R117* 0.38 TCGA-XK-AAIW-01 6 24178685 24178685 C T DCDC2 Missense_Mutation p.R400H 0.17 tolerated_low_confidence(0.11) benign(0.073) TCGA-XK-AAIW-01 6 24450058 24450058 C T GPLD1 Missense_Mutation p.V469M 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 24547556 24547556 C T KIAA0319 Missense_Mutation p.S1019N 0.30 deleterious(0.01) possibly_damaging(0.873) TCGA-XK-AAIW-01 6 25600698 25600698 C T LRRC16A Silent p.P1092P 0.16 TCGA-XK-AAIW-01 6 25661856 25661856 G A SCGN Missense_Mutation p.R77H 0.25 tolerated(0.1) benign(0.007) TCGA-XK-AAIW-01 6 26021992 26021992 G A HIST1H4A Missense_Mutation p.G29D 0.45 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 6 26107855 26107855 G A HIST1H1T Missense_Mutation p.P156L 0.42 deleterious(0) possibly_damaging(0.685) TCGA-XK-AAIW-01 6 26124904 26124904 T C HIST1H2AC Intron 0.38 TCGA-XK-AAIW-01 6 26225632 26225632 C T HIST1H3E Missense_Mutation p.R84C 0.36 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-XK-AAIW-01 6 26271587 26271587 C T HIST1H3G Missense_Mutation p.R9H 0.12 deleterious_low_confidence(0.03) benign(0.009) TCGA-XK-AAIW-01 6 26392674 26392674 C T BTN2A2 Missense_Mutation p.R351W 0.22 tolerated(0.13) probably_damaging(0.977) TCGA-XK-AAIW-01 6 26423271 26423271 C T BTN2A3P RNA 0.35 TCGA-XK-AAIW-01 6 26431655 26431655 C T BTN2A3P RNA 0.10 TCGA-XK-AAIW-01 6 26598942 26598942 G A ABT1 3'UTR 0.24 TCGA-XK-AAIW-01 6 27420267 27420267 C T ZNF184 Silent p.T357T 0.39 TCGA-XK-AAIW-01 6 27421019 27421019 T C ZNF184 Missense_Mutation p.N107D 0.11 tolerated(0.2) benign(0.001) TCGA-XK-AAIW-01 6 27858182 27858182 C T HIST1H3J Missense_Mutation p.R130H 0.15 tolerated_low_confidence(0.07) benign(0.346) TCGA-XK-AAIW-01 6 27879581 27879581 C A OR2B2 Nonsense_Mutation p.E173* 0.55 TCGA-XK-AAIW-01 6 27925427 27925427 C T OR2B6 Missense_Mutation p.H137Y 0.34 deleterious(0.01) possibly_damaging(0.616) TCGA-XK-AAIW-01 6 27925441 27925441 C T OR2B6 Silent p.C141C 0.36 TCGA-XK-AAIW-01 6 28116402 28116402 C T ZKSCAN8 Missense_Mutation p.R73W 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 28227632 28227632 G A NKAPL Silent p.T161T 0.13 TCGA-XK-AAIW-01 6 28891196 28891196 C T TRIM27 Missense_Mutation p.A72T 0.33 deleterious(0.01) benign(0.004) TCGA-XK-AAIW-01 6 292493 292493 C T DUSP22 5'UTR 0.33 TCGA-XK-AAIW-01 6 29323599 29323599 G A OR5V1 Missense_Mutation p.A125V 0.16 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 6 29599295 29599295 A T GABBR1 Missense_Mutation p.F56Y 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.494) TCGA-XK-AAIW-01 6 29599357 29599357 C T GABBR1 Silent p.P35P 0.30 TCGA-XK-AAIW-01 6 29641216 29641216 C T ZFP57 Missense_Mutation p.M224I 0.37 tolerated(0.14) benign(0.03) TCGA-XK-AAIW-01 6 29692036 29692036 G A HLA-F Missense_Mutation p.G141S 0.25 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-XK-AAIW-01 6 29797302 29797302 C T HLA-G Missense_Mutation p.R243W 0.42 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 6 29976906 29976906 C T ZNRD1-AS1 RNA 0.42 TCGA-XK-AAIW-01 6 30036976 30036976 C T PPP1R11 Missense_Mutation p.R92C 0.33 deleterious(0.02) possibly_damaging(0.642) TCGA-XK-AAIW-01 6 30036998 30036998 G A PPP1R11 Missense_Mutation p.R99H 0.46 tolerated(0.17) benign(0.415) TCGA-XK-AAIW-01 6 30128254 30128254 C T TRIM10 Missense_Mutation p.A128T 0.49 deleterious(0.01) benign(0.084) TCGA-XK-AAIW-01 6 30131521 30131521 G A TRIM15 Silent p.A20A 0.60 TCGA-XK-AAIW-01 6 30228211 30228211 G A HCG17 Intron 0.47 TCGA-XK-AAIW-01 6 30314256 30314256 C T RPP21 Missense_Mutation p.R105C 0.50 tolerated(0.1) probably_damaging(0.985) TCGA-XK-AAIW-01 6 30551625 30551625 C A ABCF1 Missense_Mutation p.L354M 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-XK-AAIW-01 6 30551997 30551997 C T ABCF1 Silent p.V377V 0.11 TCGA-XK-AAIW-01 6 30572474 30572474 G C PPP1R10 Missense_Mutation p.S331R 0.43 deleterious(0.05) benign(0.009) TCGA-XK-AAIW-01 6 30680284 30680284 C T MDC1 Missense_Mutation p.A479T 0.38 tolerated(0.15) possibly_damaging(0.483) TCGA-XK-AAIW-01 6 30680817 30680817 G A MDC1 Missense_Mutation p.T301I 0.34 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 6 3077075 3077075 C A RIPK1 Silent p.S6S 0.08 TCGA-XK-AAIW-01 6 3085632 3085632 G A RIPK1 Silent p.P276P 0.42 TCGA-XK-AAIW-01 6 30856711 30856711 C T DDR1 Nonsense_Mutation p.Q38* 0.54 TCGA-XK-AAIW-01 6 30866025 30866025 C T DDR1 Missense_Mutation p.R804C 0.48 deleterious(0) possibly_damaging(0.704) TCGA-XK-AAIW-01 6 30879819 30879819 G A GTF2H4 Missense_Mutation p.R285H 0.24 deleterious(0.04) possibly_damaging(0.721) TCGA-XK-AAIW-01 6 30882570 30882570 C A VARS2 Intron 0.41 TCGA-XK-AAIW-01 6 30882962 30882962 G A VARS2 Silent p.R107R 0.37 TCGA-XK-AAIW-01 6 30887557 30887557 G A VARS2 Missense_Mutation p.R396H 0.44 tolerated(0.37) benign(0.019) TCGA-XK-AAIW-01 6 31079568 31079568 T - C6orf15 Frame_Shift_Del p.I190Sfs*23 0.31 TCGA-XK-AAIW-01 6 31112527 31112527 G A CCHCR1 Missense_Mutation p.R702W 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-XK-AAIW-01 6 31112985 31112985 C T CCHCR1 Missense_Mutation p.A612T 0.39 tolerated(0.1) probably_damaging(0.969) TCGA-XK-AAIW-01 6 31129716 31129716 C T TCF19 Missense_Mutation p.P244L 0.45 tolerated(0.38) benign(0.15) TCGA-XK-AAIW-01 6 31324466 31324466 G A HLA-B Silent p.A114A 0.48 TCGA-XK-AAIW-01 6 31477696 31477696 C T MICB 3'UTR 0.15 TCGA-XK-AAIW-01 6 31508224 31508224 G C DDX39B Missense_Mutation p.A29G 0.27 tolerated(0.26) benign(0.001) TCGA-XK-AAIW-01 6 31583099 31583099 G A AIF1 5'UTR 0.27 TCGA-XK-AAIW-01 6 31590959 31590959 C T PRRC2A Intron 0.39 TCGA-XK-AAIW-01 6 31608180 31608180 C T BAG6 Nonsense_Mutation p.W1010* 0.40 TCGA-XK-AAIW-01 6 31608917 31608917 C A BAG6 Missense_Mutation p.Q887H 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-XK-AAIW-01 6 31614220 31614220 C T BAG6 Missense_Mutation p.R296H 0.39 deleterious(0) possibly_damaging(0.768) TCGA-XK-AAIW-01 6 31614295 31614295 G T BAG6 Missense_Mutation p.P271H 0.29 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 6 31637620 31637620 G A CSNK2B Missense_Mutation p.G189S 0.39 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 31659444 31659444 C T ABHD16A Missense_Mutation p.R252Q 0.42 deleterious(0) possibly_damaging(0.86) TCGA-XK-AAIW-01 6 31759732 31759732 C T VARS Missense_Mutation p.M296I 0.36 tolerated(0.06) benign(0.024) TCGA-XK-AAIW-01 6 31831332 31831332 C A SLC44A4 3'UTR 0.50 TCGA-XK-AAIW-01 6 31838427 31838427 C T SLC44A4 Silent p.L330L 0.73 TCGA-XK-AAIW-01 6 31850722 31850722 G A EHMT2 Missense_Mutation p.A1020V 0.25 deleterious(0.01) possibly_damaging(0.862) TCGA-XK-AAIW-01 6 31910873 31910873 C T CFB Silent p.L300L 0.16 TCGA-XK-AAIW-01 6 31917883 31917883 G A CFB Missense_Mutation p.D991N 0.37 tolerated(0.12) benign(0.431) TCGA-XK-AAIW-01 6 31917903 31917903 G A CFB Nonsense_Mutation p.W997* 0.43 TCGA-XK-AAIW-01 6 31926208 31926208 G A NELFE Missense_Mutation p.P6S 0.21 tolerated(1) benign(0.042) TCGA-XK-AAIW-01 6 31928035 31928035 C T SKIV2L Missense_Mutation p.A92V 0.47 tolerated(0.24) benign(0.001) TCGA-XK-AAIW-01 6 32011641 32011641 G A TNXB Silent p.G234G 0.36 TCGA-XK-AAIW-01 6 32015602 32015602 C A TNXB 5'Flank 0.42 TCGA-XK-AAIW-01 6 32029310 32029310 G A TNXB Silent p.P2452P 0.47 TCGA-XK-AAIW-01 6 32029957 32029957 G A TNXB Missense_Mutation p.P2382L 0.45 probably_damaging(0.996) TCGA-XK-AAIW-01 6 32056719 32056719 G A TNXB Silent p.Y874Y 0.50 TCGA-XK-AAIW-01 6 32087657 32087657 T G ATF6B Silent p.R304R 0.31 TCGA-XK-AAIW-01 6 32096014 32096014 G A ATF6B 5'UTR 0.40 TCGA-XK-AAIW-01 6 32169087 32169087 C T NOTCH4 Missense_Mutation p.A1316T 0.54 deleterious(0.04) possibly_damaging(0.697) TCGA-XK-AAIW-01 6 32188977 32188977 G A NOTCH4 Missense_Mutation p.R193C 0.32 deleterious(0.01) possibly_damaging(0.677) TCGA-XK-AAIW-01 6 32363886 32363886 G A BTNL2 Silent p.D336D 0.33 TCGA-XK-AAIW-01 6 32363946 32363946 A G BTNL2 Silent p.S316S 0.36 TCGA-XK-AAIW-01 6 32372925 32372925 G T BTNL2 Missense_Mutation p.P73H 0.42 tolerated(0.07) benign(0.208) TCGA-XK-AAIW-01 6 32489898 32489898 G A HLA-DRB5 Missense_Mutation p.R52W 0.36 deleterious(0.01) probably_damaging(0.982) TCGA-XK-AAIW-01 6 3273279 3273279 G A SLC22A23 3'UTR 0.37 TCGA-XK-AAIW-01 6 32805627 32805627 C T TAP2 Silent p.E128E 0.10 TCGA-XK-AAIW-01 6 32826307 32826307 C T PSMB9 Intron 0.33 TCGA-XK-AAIW-01 6 32906527 32906527 G A HLA-DMB Missense_Mutation p.R91C 0.39 deleterious(0.03) benign(0.433) TCGA-XK-AAIW-01 6 32946063 32946063 G A BRD2 Missense_Mutation p.R580H 0.38 tolerated(0.14) possibly_damaging(0.522) TCGA-XK-AAIW-01 6 33236315 33236315 G A VPS52 Silent p.C220C 0.42 TCGA-XK-AAIW-01 6 33236399 33236399 C A VPS52 Missense_Mutation p.E192D 0.49 tolerated(0.33) benign(0.107) TCGA-XK-AAIW-01 6 33246264 33246264 C A B3GALT4 Silent p.P356P 0.36 TCGA-XK-AAIW-01 6 33248658 33248658 C T WDR46 Missense_Mutation p.A408T 0.25 tolerated(0.47) benign(0.008) TCGA-XK-AAIW-01 6 33269491 33269491 T C TAPBP 3'Flank 0.42 TCGA-XK-AAIW-01 6 33381025 33381025 G T PHF1 Missense_Mutation p.E130D 0.23 tolerated(0.62) benign(0.005) TCGA-XK-AAIW-01 6 33405973 33405973 C A SYNGAP1 Missense_Mutation p.L431M 0.44 tolerated(0.13) possibly_damaging(0.634) TCGA-XK-AAIW-01 6 33411028 33411028 C T SYNGAP1 Missense_Mutation p.T900M 0.34 tolerated(0.26) benign(0.018) TCGA-XK-AAIW-01 6 33423633 33423633 A G ZBTB9 Silent p.P252P 0.36 TCGA-XK-AAIW-01 6 33424404 33424404 C T ZBTB9 3'UTR 0.45 TCGA-XK-AAIW-01 6 33543083 33543083 A G BAK1 Silent p.I114I 0.39 TCGA-XK-AAIW-01 6 33639817 33639817 C T ITPR3 Missense_Mutation p.R914W 0.28 tolerated(0.19) possibly_damaging(0.772) TCGA-XK-AAIW-01 6 33653961 33653961 C T ITPR3 Silent p.N1933N 0.24 TCGA-XK-AAIW-01 6 33656035 33656035 G T ITPR3 Missense_Mutation p.S2132I 0.41 deleterious(0.01) benign(0.011) TCGA-XK-AAIW-01 6 33663472 33663472 C T SBP1 Translation_Start_Site p.M1? 0.32 unknown(0) TCGA-XK-AAIW-01 6 33694579 33694579 G A IP6K3 Missense_Mutation p.P173L 0.36 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 6 33744944 33744944 G A LEMD2 Missense_Mutation p.A410V 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-XK-AAIW-01 6 34392485 34392485 G A RPS10 Missense_Mutation p.R95C 0.55 tolerated(0.16) benign(0.072) TCGA-XK-AAIW-01 6 34824188 34824188 T C UHRF1BP1 Splice_Site p.X431_splice 0.39 TCGA-XK-AAIW-01 6 35051201 35051201 C T ANKS1A Missense_Mutation p.T972M 0.20 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 35205730 35205730 C T SCUBE3 Missense_Mutation p.A255V 0.34 tolerated(0.22) benign(0.059) TCGA-XK-AAIW-01 6 35212573 35212573 G A SCUBE3 Missense_Mutation p.V796M 0.41 deleterious(0.01) probably_damaging(0.99) TCGA-XK-AAIW-01 6 35261620 35261620 T C ZNF76 Silent p.P474P 0.38 TCGA-XK-AAIW-01 6 35389649 35389649 G A PPARD Missense_Mutation p.R113H 0.47 tolerated(0.05) benign(0.115) TCGA-XK-AAIW-01 6 35392446 35392446 C T PPARD Missense_Mutation p.P323L 0.52 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 35466056 35466056 C A TULP1 3'UTR 0.50 TCGA-XK-AAIW-01 6 35840373 35840373 G A SRPK1 Nonsense_Mutation p.R240* 0.24 TCGA-XK-AAIW-01 6 35923139 35923139 C T SLC26A8 Silent p.G674G 0.38 TCGA-XK-AAIW-01 6 35980127 35980127 G A SLC26A8 Nonsense_Mutation p.R71* 0.26 TCGA-XK-AAIW-01 6 35987305 35987305 G A SLC26A8 Silent p.V60V 0.25 TCGA-XK-AAIW-01 6 36106713 36106713 C T MAPK13 Missense_Mutation p.A300V 0.20 tolerated(0.1) benign(0.041) TCGA-XK-AAIW-01 6 36168828 36168828 C T BRPF3 Silent p.C243C 0.36 TCGA-XK-AAIW-01 6 36269821 36269821 G T PNPLA1 Missense_Mutation p.G320V 0.28 tolerated(0.12) benign(0.056) TCGA-XK-AAIW-01 6 36275449 36275449 C T PNPLA1 Missense_Mutation p.P519S 0.32 tolerated_low_confidence(0.5) benign(0.01) TCGA-XK-AAIW-01 6 36298070 36298070 G A C6orf222 Missense_Mutation p.P133L 0.47 tolerated(0.11) benign(0) TCGA-XK-AAIW-01 6 37421017 37421017 G A CMTR1 Missense_Mutation p.A236T 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 38142662 38142662 G A BTBD9 3'UTR 0.36 TCGA-XK-AAIW-01 6 38790793 38790793 C T DNAH8 Missense_Mutation p.R1018C 0.58 possibly_damaging(0.676) TCGA-XK-AAIW-01 6 38791409 38791409 G T DNAH8 Missense_Mutation p.Q1047H 0.38 possibly_damaging(0.497) TCGA-XK-AAIW-01 6 39864692 39864692 G A DAAM2 Missense_Mutation p.G816S 0.46 tolerated(0.06) benign(0.012) TCGA-XK-AAIW-01 6 39874303 39874303 A G MOCS1 3'UTR 0.36 TCGA-XK-AAIW-01 6 4070021 4070021 G A FAM217A Missense_Mutation p.P146S 0.33 tolerated(0.05) benign(0.37) TCGA-XK-AAIW-01 6 4130661 4130661 C T ECI2 Missense_Mutation p.G149D 0.32 tolerated(0.12) benign(0.081) TCGA-XK-AAIW-01 6 41545742 41545742 C T FOXP4 Nonsense_Mutation p.Q75* 0.29 TCGA-XK-AAIW-01 6 41617506 41617506 G A MDFI Missense_Mutation p.A137T 0.39 tolerated(0.68) benign(0.016) TCGA-XK-AAIW-01 6 41704632 41704632 G A PGC Silent p.Y375Y 0.25 TCGA-XK-AAIW-01 6 41738655 41738655 C T FRS3 Missense_Mutation p.R394H 0.17 deleterious(0.05) benign(0.163) TCGA-XK-AAIW-01 6 41738969 41738969 G A FRS3 Silent p.N289N 0.34 TCGA-XK-AAIW-01 6 42713704 42713704 C T TBCC Silent p.R36R 0.42 TCGA-XK-AAIW-01 6 42832599 42832599 C T GLTSCR1L Silent p.I885I 0.23 TCGA-XK-AAIW-01 6 42903398 42903398 G A CNPY3 Missense_Mutation p.R121Q 0.55 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 42905909 42905909 C A CNPY3 Missense_Mutation p.L193I 0.45 deleterious(0) probably_damaging(0.974) TCGA-XK-AAIW-01 6 43010619 43010619 G A CUL7 Missense_Mutation p.P1273L 0.14 deleterious(0.01) probably_damaging(0.962) TCGA-XK-AAIW-01 6 43012606 43012606 C T CUL7 Missense_Mutation p.R1103H 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-XK-AAIW-01 6 43017806 43017806 G A CUL7 Silent p.H572H 0.16 TCGA-XK-AAIW-01 6 43018788 43018788 C T CUL7 Missense_Mutation p.R468Q 0.40 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 6 43109739 43109739 C T PTK7 Silent p.C621C 0.49 TCGA-XK-AAIW-01 6 43160785 43160785 G A CUL9 Missense_Mutation p.G743R 0.24 tolerated(0.51) probably_damaging(0.996) TCGA-XK-AAIW-01 6 43172186 43172186 G A CUL9 Silent p.A1416A 0.39 TCGA-XK-AAIW-01 6 43270090 43270090 C T SLC22A7 Missense_Mutation p.T405M 0.50 deleterious(0.02) probably_damaging(0.984) TCGA-XK-AAIW-01 6 43395642 43395642 C T ABCC10 Intron 0.41 TCGA-XK-AAIW-01 6 43403513 43403513 C T ABCC10 Nonsense_Mutation p.R545* 0.44 TCGA-XK-AAIW-01 6 43418543 43418543 G A DLK2 Missense_Mutation p.R296W 0.39 deleterious(0.03) probably_damaging(0.913) TCGA-XK-AAIW-01 6 43418773 43418773 C T DLK2 Missense_Mutation p.R219H 0.28 tolerated(0.35) benign(0.006) TCGA-XK-AAIW-01 6 43469376 43469376 C T TJAP1 Silent p.L81L 0.31 TCGA-XK-AAIW-01 6 43487456 43487456 G A POLR1C Missense_Mutation p.A88T 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 43540301 43540301 C A XPO5 Missense_Mutation p.G81V 0.46 tolerated(0.23) benign(0.001) TCGA-XK-AAIW-01 6 43623320 43623320 C T RSPH9 Intron 0.36 TCGA-XK-AAIW-01 6 44116566 44116566 C T TMEM63B Missense_Mutation p.R433C 0.24 deleterious(0) probably_damaging(0.976) TCGA-XK-AAIW-01 6 44137677 44137677 G A CAPN11 Missense_Mutation p.G125E 0.16 deleterious(0) benign(0.339) TCGA-XK-AAIW-01 6 44148387 44148387 A G CAPN11 Missense_Mutation p.I578M 0.42 deleterious(0.03) benign(0.009) TCGA-XK-AAIW-01 6 44250230 44250230 C T TCTE1 Missense_Mutation p.D305N 0.11 tolerated(0.13) benign(0.32) TCGA-XK-AAIW-01 6 44272399 44272399 C T AARS2 Missense_Mutation p.V579M 0.23 tolerated(0.08) possibly_damaging(0.882) TCGA-XK-AAIW-01 6 44279880 44279880 C A AARS2 Missense_Mutation p.G122C 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 44921078 44921078 G A SUPT3H Missense_Mutation p.A268V 0.33 tolerated(0.32) possibly_damaging(0.839) TCGA-XK-AAIW-01 6 45459744 45459744 G A RUNX2 Missense_Mutation p.R251H 0.34 tolerated(0.05) probably_damaging(0.996) TCGA-XK-AAIW-01 6 46135419 46135419 C T ENPP5 Missense_Mutation p.G194D 0.37 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 6 46656678 46656678 C T TDRD6 Silent p.S271S 0.40 TCGA-XK-AAIW-01 6 46660982 46660982 C A TDRD6 Missense_Mutation p.A1706D 0.24 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 6 46661673 46661673 T C TDRD6 Silent p.C1936C 0.23 TCGA-XK-AAIW-01 6 46821804 46821804 C T GPR116 Silent p.T1322T 0.42 TCGA-XK-AAIW-01 6 46830832 46830832 C T GPR116 Silent p.G664G 0.40 TCGA-XK-AAIW-01 6 46851338 46851338 G T GPR116 Silent p.S190S 0.26 TCGA-XK-AAIW-01 6 47200701 47200701 G A TNFRSF21 Missense_Mutation p.R590C 0.37 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 6 47253964 47253964 C A TNFRSF21 Missense_Mutation p.G155V 0.38 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 6 47512358 47512358 G T CD2AP Missense_Mutation p.Q112H 0.31 tolerated(0.06) possibly_damaging(0.903) TCGA-XK-AAIW-01 6 47563637 47563637 A G CD2AP Silent p.A383A 0.38 TCGA-XK-AAIW-01 6 4937830 4937830 C T CDYL Missense_Mutation p.T327M 0.39 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 6 49582447 49582447 C A RHAG Missense_Mutation p.A254S 0.13 tolerated(0.25) benign(0.192) TCGA-XK-AAIW-01 6 49754959 49754959 C G PGK2 5'UTR 0.33 TCGA-XK-AAIW-01 6 5004148 5004148 C T RPP40 Missense_Mutation p.R30Q 0.30 tolerated(0.31) benign(0.018) TCGA-XK-AAIW-01 6 51720866 51720866 G A PKHD1 Missense_Mutation p.A2579V 0.35 tolerated(0.33) benign(0.005) TCGA-XK-AAIW-01 6 51918880 51918880 C A PKHD1 Missense_Mutation p.K640N 0.48 deleterious(0) benign(0.285) TCGA-XK-AAIW-01 6 52141268 52141268 C T MCM3 Missense_Mutation p.R436H 0.36 deleterious(0) possibly_damaging(0.483) TCGA-XK-AAIW-01 6 52141945 52141945 G A MCM3 Missense_Mutation p.A407V 0.46 deleterious(0.01) possibly_damaging(0.903) TCGA-XK-AAIW-01 6 52148119 52148119 C T MCM3 Missense_Mutation p.R100H 0.43 tolerated(0.06) possibly_damaging(0.877) TCGA-XK-AAIW-01 6 52357121 52357121 T C EFHC1 Silent p.V635V 0.16 TCGA-XK-AAIW-01 6 52380805 52380805 G A TRAM2 Missense_Mutation p.T137M 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-XK-AAIW-01 6 52622763 52622763 G T GSTA2 5'UTR 0.34 TCGA-XK-AAIW-01 6 53520007 53520007 C T KLHL31 Missense_Mutation p.V22I 0.50 tolerated_low_confidence(0.07) probably_damaging(0.972) TCGA-XK-AAIW-01 6 54025229 54025229 A G MLIP Missense_Mutation p.E250G 0.49 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 6 55381397 55381397 G A HMGCLL1 Missense_Mutation p.A131V 0.30 deleterious(0) possibly_damaging(0.672) TCGA-XK-AAIW-01 6 55620455 55620455 A G BMP5 Missense_Mutation p.V414A 0.43 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 6 56417270 56417270 G A DST Silent p.D2817D 0.35 TCGA-XK-AAIW-01 6 56417320 56417320 T C DST Missense_Mutation p.T2801A 0.24 benign(0) TCGA-XK-AAIW-01 6 56481480 56481480 C T DST Intron 0.41 TCGA-XK-AAIW-01 6 56481858 56481858 G C DST Intron 0.36 TCGA-XK-AAIW-01 6 56716397 56716397 G A RP11-472M19.2 Intron 0.43 TCGA-XK-AAIW-01 6 56915637 56915637 C T KIAA1586 Silent p.S57S 0.34 TCGA-XK-AAIW-01 6 57048805 57048805 T C BAG2 Silent p.V151V 0.39 TCGA-XK-AAIW-01 6 57246843 57246843 T C PRIM2 Silent p.D190D 0.16 TCGA-XK-AAIW-01 6 57246965 57246965 C T PRIM2 Missense_Mutation p.A231V 0.12 deleterious(0.02) possibly_damaging(0.868) TCGA-XK-AAIW-01 6 62390848 62390848 G A KHDRBS2 3'UTR 0.29 TCGA-XK-AAIW-01 6 6266854 6266854 C T F13A1 Missense_Mutation p.V170I 0.13 tolerated(0.95) benign(0.003) TCGA-XK-AAIW-01 6 6305756 6305756 C T F13A1 Silent p.T49T 0.35 TCGA-XK-AAIW-01 6 64029819 64029819 C A LGSN Missense_Mutation p.E10D 0.36 tolerated_low_confidence(0.3) benign(0.001) TCGA-XK-AAIW-01 6 64395427 64395427 G A PHF3 Missense_Mutation p.A602T 0.36 tolerated(0.71) benign(0.001) TCGA-XK-AAIW-01 6 70909410 70909410 C T COL19A1 Missense_Mutation p.P1065S 0.25 deleterious(0) possibly_damaging(0.71) TCGA-XK-AAIW-01 6 70948980 70948980 C A COL9A1 Nonsense_Mutation p.G697* 0.07 TCGA-XK-AAIW-01 6 71571481 71571481 C T SMAP1 3'UTR 0.48 TCGA-XK-AAIW-01 6 7229303 7229303 C T RREB1 Missense_Mutation p.A324V 0.44 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 7230078 7230078 G A RREB1 Silent p.P582P 0.38 TCGA-XK-AAIW-01 6 72967959 72967959 C T RIMS1 Missense_Mutation p.R968C 0.40 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 6 7373783 7373783 C T CAGE1 Silent p.R423R 0.20 TCGA-XK-AAIW-01 6 73951161 73951161 C T KHDC1 3'UTR 0.46 TCGA-XK-AAIW-01 6 74063025 74063025 C T DPPA5 3'UTR 0.45 TCGA-XK-AAIW-01 6 74227545 74227545 C A EEF1A1 Missense_Mutation p.Q459H 0.30 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 6 74331564 74331564 G T SLC17A5 Missense_Mutation p.T314N 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-XK-AAIW-01 6 74516566 74516566 G T CD109 Splice_Site p.X987_splice 0.32 TCGA-XK-AAIW-01 6 74519715 74519715 C G CD109 Missense_Mutation p.Q1122E 0.08 tolerated(0.18) benign(0.044) TCGA-XK-AAIW-01 6 75822986 75822986 G A COL12A1 Silent p.G2628G 0.16 TCGA-XK-AAIW-01 6 75866131 75866131 C T COL12A1 Missense_Mutation p.R1031H 0.21 probably_damaging(0.919) TCGA-XK-AAIW-01 6 75892921 75892921 G A COL12A1 Missense_Mutation p.A579V 0.48 probably_damaging(0.998) TCGA-XK-AAIW-01 6 75893364 75893364 G A COL12A1 Silent p.C431C 0.34 TCGA-XK-AAIW-01 6 76344440 76344440 C T SENP6 Missense_Mutation p.T124M 0.27 tolerated(0.2) benign(0.157) TCGA-XK-AAIW-01 6 76388358 76388358 A T SENP6 Missense_Mutation p.E636D 0.53 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 6 76412444 76412444 C A SENP6 Missense_Mutation p.A791D 0.33 tolerated(0.09) benign(0.388) TCGA-XK-AAIW-01 6 76538323 76538323 G T MYO6 Missense_Mutation p.R85I 0.35 deleterious(0.04) unknown(0) TCGA-XK-AAIW-01 6 76568665 76568665 C T MYO6 Silent p.C476C 0.12 TCGA-XK-AAIW-01 6 79607593 79607593 C A IRAK1BP1 Missense_Mutation p.N143K 0.30 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 80751910 80751910 A - TTK Frame_Shift_Del p.K857Nfs*36 0.25 TCGA-XK-AAIW-01 6 82922423 82922423 C T IBTK Splice_Site p.X764_splice 0.13 TCGA-XK-AAIW-01 6 83829480 83829480 C T DOPEY1 Silent p.N298N 0.43 TCGA-XK-AAIW-01 6 83830445 83830445 A G DOPEY1 Missense_Mutation p.N345S 0.26 tolerated(0.92) benign(0) TCGA-XK-AAIW-01 6 83838913 83838913 G A DOPEY1 Missense_Mutation p.C676Y 0.47 tolerated(0.11) benign(0.005) TCGA-XK-AAIW-01 6 83841913 83841913 T C DOPEY1 Missense_Mutation p.W879R 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 6 83848608 83848608 A G DOPEY1 Missense_Mutation p.H1616R 0.26 tolerated(0.42) benign(0.007) TCGA-XK-AAIW-01 6 83949258 83949258 C A ME1 Missense_Mutation p.E304D 0.39 deleterious(0) probably_damaging(0.916) TCGA-XK-AAIW-01 6 84634191 84634191 C T CYB5R4 Missense_Mutation p.R232W 0.40 deleterious(0.01) possibly_damaging(0.846) TCGA-XK-AAIW-01 6 87971050 87971050 C T ZNF292 Missense_Mutation p.A2568V 0.41 tolerated(0.19) possibly_damaging(0.638) TCGA-XK-AAIW-01 6 88374517 88374517 C T ORC3 Silent p.C631C 0.29 TCGA-XK-AAIW-01 6 88385621 88385621 C T AKIRIN2 Silent p.T186T 0.17 TCGA-XK-AAIW-01 6 88853613 88853613 T C CNR1 Missense_Mutation p.M461V 0.39 tolerated(0.69) benign(0.003) TCGA-XK-AAIW-01 6 88853988 88853988 G A CNR1 Missense_Mutation p.R336C 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 6 89814883 89814883 C T SRSF12 Missense_Mutation p.S124N 0.64 deleterious(0.01) possibly_damaging(0.483) TCGA-XK-AAIW-01 6 89907817 89907817 C T GABRR1 Missense_Mutation p.R165H 0.43 deleterious(0.04) benign(0.029) TCGA-XK-AAIW-01 6 90337305 90337305 C T ANKRD6 Missense_Mutation p.R459C 0.45 tolerated(0.06) benign(0.014) TCGA-XK-AAIW-01 6 90422347 90422347 C T MDN1 Silent p.Q2459Q 0.39 TCGA-XK-AAIW-01 6 90425472 90425472 G A MDN1 Missense_Mutation p.R2254C 0.41 probably_damaging(1) TCGA-XK-AAIW-01 6 90426431 90426431 G A MDN1 Silent p.S2227S 0.08 TCGA-XK-AAIW-01 6 90428725 90428725 C T MDN1 Missense_Mutation p.G2028R 0.29 benign(0.008) TCGA-XK-AAIW-01 6 90484448 90484448 T C MDN1 Missense_Mutation p.E609G 0.40 possibly_damaging(0.641) TCGA-XK-AAIW-01 6 90575884 90575884 G T CASP8AP2 RNA 0.13 TCGA-XK-AAIW-01 6 90577857 90577857 C T CASP8AP2 RNA 0.34 TCGA-XK-AAIW-01 6 94066493 94066493 A G EPHA7 Silent p.S422S 0.22 TCGA-XK-AAIW-01 6 96988479 96988479 C T UFL1 Silent p.S409S 0.35 TCGA-XK-AAIW-01 6 97051568 97051568 C T FHL5 Missense_Mutation p.P27S 0.40 deleterious(0.03) benign(0.019) TCGA-XK-AAIW-01 6 97051589 97051589 G A FHL5 Missense_Mutation p.D34N 0.43 tolerated(0.07) benign(0.099) TCGA-XK-AAIW-01 6 97246676 97246676 C T GPR63 Missense_Mutation p.R311H 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 6 97246940 97246940 G A GPR63 Missense_Mutation p.P223L 0.19 tolerated(0.07) possibly_damaging(0.733) TCGA-XK-AAIW-01 6 97587107 97587107 C T KLHL32 Silent p.C604C 0.40 TCGA-XK-AAIW-01 6 97613176 97613176 G A MMS22L Missense_Mutation p.T1056I 0.46 deleterious(0.01) benign(0.099) TCGA-XK-AAIW-01 6 99849499 99849499 C T PNISR Silent p.K445K 0.24 TCGA-XK-AAIW-01 7 100086757 100086757 G A NYAP1 Silent p.T471T 0.40 TCGA-XK-AAIW-01 7 100087214 100087214 G A NYAP1 Missense_Mutation p.A624T 0.31 tolerated(1) benign(0.005) TCGA-XK-AAIW-01 7 100212493 100212493 C T MOSPD3 Missense_Mutation p.P172L 0.33 tolerated(0.11) benign(0.046) TCGA-XK-AAIW-01 7 100228523 100228523 C T TFR2 Missense_Mutation p.R420H 0.48 tolerated(0.25) benign(0.036) TCGA-XK-AAIW-01 7 100274182 100274182 T C GNB2 Missense_Mutation p.S28P 0.43 deleterious(0.04) benign(0.001) TCGA-XK-AAIW-01 7 100279357 100279357 G A GIGYF1 Silent p.S1031S 0.40 TCGA-XK-AAIW-01 7 100281031 100281031 G A GIGYF1 Missense_Mutation p.R697W 0.46 deleterious(0) unknown(0) TCGA-XK-AAIW-01 7 100282479 100282479 G A GIGYF1 Silent p.S443S 0.58 TCGA-XK-AAIW-01 7 100334249 100334249 G A ZAN Missense_Mutation p.G84R 0.40 probably_damaging(0.999) TCGA-XK-AAIW-01 7 100373052 100373052 G A ZAN Missense_Mutation p.C1960Y 0.48 unknown(0) TCGA-XK-AAIW-01 7 100373386 100373386 C T ZAN Silent p.I2040I 0.44 TCGA-XK-AAIW-01 7 100392853 100392853 G A ZAN Missense_Mutation p.G2629R 0.32 unknown(0) TCGA-XK-AAIW-01 7 100463550 100463550 G A SLC12A9 Missense_Mutation p.A690T 0.52 tolerated(0.14) benign(0.312) TCGA-XK-AAIW-01 7 100483353 100483353 T C SRRT Missense_Mutation p.V450A 0.38 tolerated(0.05) benign(0.048) TCGA-XK-AAIW-01 7 100678675 100678675 C T MUC17 Silent p.S1326S 0.37 TCGA-XK-AAIW-01 7 100679721 100679721 C T MUC17 Missense_Mutation p.A1675V 0.38 probably_damaging(0.929) TCGA-XK-AAIW-01 7 100683688 100683688 G A MUC17 Missense_Mutation p.M2997I 0.45 benign(0.227) TCGA-XK-AAIW-01 7 100685810 100685810 C T MUC17 Missense_Mutation p.R3705C 0.19 benign(0.009) TCGA-XK-AAIW-01 7 100732275 100732275 C T TRIM56 Missense_Mutation p.A561V 0.39 tolerated(0.24) benign(0.003) TCGA-XK-AAIW-01 7 100779042 100779042 C T SERPINE1 Silent p.I349I 0.29 TCGA-XK-AAIW-01 7 100839365 100839365 G A MOGAT3 Silent p.P296P 0.53 TCGA-XK-AAIW-01 7 100859203 100859203 C T PLOD3 Missense_Mutation p.D201N 0.35 tolerated(0.17) benign(0.085) TCGA-XK-AAIW-01 7 101063367 101063367 G A COL26A1 Missense_Mutation p.A90T 0.40 tolerated(0.4) benign(0.044) TCGA-XK-AAIW-01 7 101926360 101926360 C T SH2B2 5'Flank 0.31 TCGA-XK-AAIW-01 7 101960818 101960818 C T SH2B2 Silent p.N511N 0.35 TCGA-XK-AAIW-01 7 102087259 102087259 C T ORAI2 Silent p.P175P 0.15 TCGA-XK-AAIW-01 7 102098266 102098266 G A ALKBH4 Missense_Mutation p.R162W 0.40 deleterious(0.04) possibly_damaging(0.812) TCGA-XK-AAIW-01 7 102100195 102100195 C T ALKBH4 Silent p.E59E 0.29 TCGA-XK-AAIW-01 7 102453883 102453883 G T FBXL13 Missense_Mutation p.P705H 0.39 tolerated(0.2) benign(0.376) TCGA-XK-AAIW-01 7 102614185 102614185 G A FBXL13 Intron 0.47 TCGA-XK-AAIW-01 7 102837736 102837736 C T DPY19L2P2 RNA 0.29 TCGA-XK-AAIW-01 7 103126834 103126834 G T RELN Missense_Mutation p.L3265I 0.31 deleterious(0.02) benign(0.103) TCGA-XK-AAIW-01 7 103131217 103131217 C T RELN Missense_Mutation p.G3168D 0.48 tolerated(0.45) possibly_damaging(0.493) TCGA-XK-AAIW-01 7 103143553 103143553 C T RELN Missense_Mutation p.C2800Y 0.10 deleterious(0) possibly_damaging(0.61) TCGA-XK-AAIW-01 7 103191624 103191624 G A RELN Silent p.H2064H 0.40 TCGA-XK-AAIW-01 7 103191670 103191670 G A RELN Missense_Mutation p.A2049V 0.37 tolerated(0.1) probably_damaging(0.98) TCGA-XK-AAIW-01 7 103244918 103244918 G A RELN Silent p.T1007T 0.44 TCGA-XK-AAIW-01 7 103322655 103322655 G A RELN Silent p.S399S 0.36 TCGA-XK-AAIW-01 7 103338506 103338506 G T RELN Missense_Mutation p.L313I 0.37 tolerated(0.42) benign(0.004) TCGA-XK-AAIW-01 7 104742610 104742610 A C KMT2E Missense_Mutation p.K722T 0.30 deleterious_low_confidence(0.04) benign(0.403) TCGA-XK-AAIW-01 7 104751018 104751018 C T KMT2E Silent p.G1313G 0.42 TCGA-XK-AAIW-01 7 1049777 1049777 G A C7orf50 Silent p.G44G 0.17 TCGA-XK-AAIW-01 7 105146679 105146679 C T PUS7 Missense_Mutation p.R147Q 0.35 tolerated(0.57) benign(0.001) TCGA-XK-AAIW-01 7 105148785 105148785 G A PUS7 Missense_Mutation p.P59S 0.37 deleterious_low_confidence(0.04) benign(0.11) TCGA-XK-AAIW-01 7 107234540 107234540 T - BCAP29 Frame_Shift_Del p.W114Gfs*2 0.30 TCGA-XK-AAIW-01 7 107423293 107423293 G A SLC26A3 Silent p.I420I 0.34 TCGA-XK-AAIW-01 7 107545875 107545875 G A DLD Missense_Mutation p.G170S 0.41 tolerated(0.75) benign(0.001) TCGA-XK-AAIW-01 7 107546746 107546746 C T DLD Missense_Mutation p.A206V 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-XK-AAIW-01 7 107602081 107602081 C T LAMB1 Missense_Mutation p.R633Q 0.36 deleterious(0) probably_damaging(0.96) TCGA-XK-AAIW-01 7 107605029 107605029 G A LAMB1 Missense_Mutation p.L556F 0.32 tolerated(0.27) benign(0.025) TCGA-XK-AAIW-01 7 107671300 107671300 G A LAMB4 Missense_Mutation p.A1648V 0.43 tolerated(0.23) benign(0.006) TCGA-XK-AAIW-01 7 107718703 107718703 C T LAMB4 Missense_Mutation p.C649Y 0.20 deleterious(0.01) benign(0.033) TCGA-XK-AAIW-01 7 107756561 107756561 G A LAMB4 Missense_Mutation p.A27V 0.41 tolerated(0.09) benign(0.004) TCGA-XK-AAIW-01 7 107834557 107834557 C T NRCAM Silent p.V563V 0.35 TCGA-XK-AAIW-01 7 108155563 108155563 G A PNPLA8 Missense_Mutation p.R125C 0.38 deleterious_low_confidence(0.02) benign(0.021) TCGA-XK-AAIW-01 7 11030335 11030335 G A PHF14 Silent p.S302S 0.50 TCGA-XK-AAIW-01 7 111386472 111386472 G A DOCK4 Missense_Mutation p.A1523V 0.29 deleterious(0) probably_damaging(0.951) TCGA-XK-AAIW-01 7 111387340 111387340 C T DOCK4 Missense_Mutation p.V1517I 0.29 tolerated(1) benign(0.017) TCGA-XK-AAIW-01 7 111503422 111503422 C T DOCK4 Intron 0.54 TCGA-XK-AAIW-01 7 111617288 111617288 G A DOCK4 Silent p.H200H 0.44 TCGA-XK-AAIW-01 7 112098937 112098937 C T IFRD1 Missense_Mutation p.A144V 0.13 tolerated(0.38) possibly_damaging(0.606) TCGA-XK-AAIW-01 7 112412892 112412892 G A TMEM168 Missense_Mutation p.T497M 0.47 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 7 112423833 112423833 G A TMEM168 Missense_Mutation p.R350C 0.40 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 7 112424649 112424649 C T TMEM168 Missense_Mutation p.A78T 0.35 deleterious(0.04) possibly_damaging(0.794) TCGA-XK-AAIW-01 7 112462157 112462157 G A C7orf60 Missense_Mutation p.A287V 0.13 deleterious(0.04) possibly_damaging(0.745) TCGA-XK-AAIW-01 7 1131389 1131389 G A GPER1 Missense_Mutation p.G9S 0.28 tolerated_low_confidence(0.83) benign(0.001) TCGA-XK-AAIW-01 7 113519717 113519717 A G PPP1R3A Missense_Mutation p.I477T 0.43 tolerated(0.27) benign(0.004) TCGA-XK-AAIW-01 7 113519788 113519788 T C PPP1R3A Missense_Mutation p.I453M 0.37 tolerated(0.77) benign(0.03) TCGA-XK-AAIW-01 7 11415435 11415435 C A THSD7A Missense_Mutation p.D1654Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 7 11422233 11422233 G T THSD7A Nonsense_Mutation p.C1474* 0.27 TCGA-XK-AAIW-01 7 11447030 11447030 C T THSD7A Nonsense_Mutation p.W1273* 0.38 TCGA-XK-AAIW-01 7 114655765 114655765 G T MDFIC Missense_Mutation p.A282S 0.38 tolerated(0.23) probably_damaging(0.998) TCGA-XK-AAIW-01 7 116395427 116395427 C T MET Missense_Mutation p.P574S 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 7 116955208 116955208 G A WNT2 Missense_Mutation p.R169C 0.40 deleterious(0) possibly_damaging(0.87) TCGA-XK-AAIW-01 7 117182148 117182148 G A CFTR Missense_Mutation p.A399T 0.41 deleterious(0.04) benign(0.073) TCGA-XK-AAIW-01 7 117232500 117232500 C T CFTR Missense_Mutation p.T760M 0.53 tolerated(0.29) benign(0.009) TCGA-XK-AAIW-01 7 117368258 117368258 C T CTTNBP2 Missense_Mutation p.V1314I 0.18 tolerated(0.07) benign(0.348) TCGA-XK-AAIW-01 7 119914650 119914650 C T KCND2 5'UTR 0.33 TCGA-XK-AAIW-01 7 121652880 121652880 G A PTPRZ1 Silent p.L1260L 0.34 TCGA-XK-AAIW-01 7 121701298 121701298 A G PTPRZ1 3'UTR 0.33 TCGA-XK-AAIW-01 7 121773658 121773658 C T AASS Silent p.P41P 0.47 TCGA-XK-AAIW-01 7 121943235 121943235 G A FEZF1 Missense_Mutation p.T311M 0.43 deleterious(0) probably_damaging(0.966) TCGA-XK-AAIW-01 7 122338099 122338099 T C RNF133 Missense_Mutation p.T292A 0.42 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 7 122755608 122755608 C T SLC13A1 Silent p.S584S 0.41 TCGA-XK-AAIW-01 7 123594143 123594143 G A SPAM1 Silent p.Q173Q 0.40 TCGA-XK-AAIW-01 7 123595095 123595095 T C SPAM1 Silent p.A333A 0.34 TCGA-XK-AAIW-01 7 124404888 124404888 A G GPR37 Missense_Mutation p.V48A 0.23 deleterious_low_confidence(0.01) benign(0.004) TCGA-XK-AAIW-01 7 126746587 126746587 G A GRM8 Silent p.S230S 0.32 TCGA-XK-AAIW-01 7 12679999 12679999 G A SCIN Missense_Mutation p.V480I 0.31 tolerated(0.14) benign(0.002) TCGA-XK-AAIW-01 7 126882824 126882824 G A GRM8 Silent p.D145D 0.39 TCGA-XK-AAIW-01 7 127235682 127235682 T C FSCN3 Missense_Mutation p.Y156H 0.38 deleterious(0) probably_damaging(0.956) TCGA-XK-AAIW-01 7 127236393 127236393 C T FSCN3 Missense_Mutation p.R285C 0.38 tolerated(0.21) benign(0) TCGA-XK-AAIW-01 7 127894591 127894591 C T LEP Silent p.N93N 0.18 TCGA-XK-AAIW-01 7 127979741 127979741 C T RBM28 Missense_Mutation p.V75M 0.32 deleterious(0) benign(0.313) TCGA-XK-AAIW-01 7 128407537 128407537 C T CALU Missense_Mutation p.T232I 0.41 tolerated(0.09) benign(0.017) TCGA-XK-AAIW-01 7 128412651 128412651 G C OPN1SW Missense_Mutation p.C330W 0.09 deleterious(0.01) benign(0.003) TCGA-XK-AAIW-01 7 128451905 128451905 G A CCDC136 Missense_Mutation p.A694T 0.36 tolerated(0.42) benign(0.031) TCGA-XK-AAIW-01 7 128470942 128470942 G A FLNC Missense_Mutation p.R84H 0.52 deleterious(0) possibly_damaging(0.513) TCGA-XK-AAIW-01 7 128478072 128478072 G A FLNC Missense_Mutation p.R334H 0.37 deleterious(0.01) probably_damaging(0.958) TCGA-XK-AAIW-01 7 128480708 128480708 C T FLNC Silent p.G552G 0.41 TCGA-XK-AAIW-01 7 128485188 128485188 C A FLNC Silent p.T1223T 0.27 TCGA-XK-AAIW-01 7 128491585 128491585 C T FLNC Silent p.T1915T 0.41 TCGA-XK-AAIW-01 7 128495288 128495288 C T FLNC Missense_Mutation p.H2391Y 0.43 deleterious(0) possibly_damaging(0.544) TCGA-XK-AAIW-01 7 128587975 128587975 G A IRF5 Missense_Mutation p.R327H 0.34 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 7 129066990 129066990 G A AHCYL2 3'UTR 0.20 TCGA-XK-AAIW-01 7 129357154 129357154 G T NRF1 Missense_Mutation p.E387D 0.25 tolerated(0.33) benign(0.004) TCGA-XK-AAIW-01 7 129769308 129769308 G T KLHDC10 Missense_Mutation p.E337D 0.37 tolerated(0.43) benign(0.359) TCGA-XK-AAIW-01 7 129919385 129919385 G T CPA2 Silent p.V290V 0.36 TCGA-XK-AAIW-01 7 130297071 130297071 C T COPG2 Nonsense_Mutation p.W177* 0.19 TCGA-XK-AAIW-01 7 131815121 131815121 C T PLXNA4 3'UTR 0.30 TCGA-XK-AAIW-01 7 131866933 131866933 C T PLXNA4 Missense_Mutation p.A1059T 0.33 tolerated(1) benign(0.002) TCGA-XK-AAIW-01 7 133580444 133580444 C T EXOC4 Silent p.C609C 0.14 TCGA-XK-AAIW-01 7 133749294 133749294 C T EXOC4 3'UTR 0.32 TCGA-XK-AAIW-01 7 133932327 133932327 G T LRGUK Missense_Mutation p.R668I 0.33 deleterious(0) probably_damaging(0.94) TCGA-XK-AAIW-01 7 134130039 134130039 T C AKR1B1 Missense_Mutation p.T287A 0.22 tolerated(0.98) benign(0.001) TCGA-XK-AAIW-01 7 134889022 134889022 G A WDR91 Nonsense_Mutation p.Q297* 0.33 TCGA-XK-AAIW-01 7 135282805 135282805 C T NUP205 Silent p.C708C 0.45 TCGA-XK-AAIW-01 7 135312833 135312833 G A NUP205 Missense_Mutation p.A1636T 0.44 tolerated(0.67) benign(0.01) TCGA-XK-AAIW-01 7 135392945 135392945 G A SLC13A4 Silent p.C94C 0.41 TCGA-XK-AAIW-01 7 136587921 136587921 C A CHRM2 Intron 0.36 TCGA-XK-AAIW-01 7 136939648 136939648 C T PTN Missense_Mutation p.A25T 0.31 tolerated(0.38) unknown(0) TCGA-XK-AAIW-01 7 137363356 137363356 C T DGKI Missense_Mutation p.V185I 0.41 deleterious(0.05) benign(0.012) TCGA-XK-AAIW-01 7 138305867 138305867 G A SVOPL Missense_Mutation p.T426M 0.19 tolerated(0.06) benign(0.054) TCGA-XK-AAIW-01 7 138312093 138312093 A G SVOPL Splice_Site p.X394_splice 0.40 TCGA-XK-AAIW-01 7 138314816 138314816 T C SVOPL Missense_Mutation p.T281A 0.46 deleterious(0.01) possibly_damaging(0.497) TCGA-XK-AAIW-01 7 138455972 138455972 G A ATP6V0A4 Silent p.S7S 0.39 TCGA-XK-AAIW-01 7 138732578 138732578 G A ZC3HAV1 Missense_Mutation p.A824V 0.36 deleterious(0) probably_damaging(0.973) TCGA-XK-AAIW-01 7 138749722 138749722 G A ZC3HAV1 Silent p.N632N 0.55 TCGA-XK-AAIW-01 7 138936733 138936733 G T UBN2 Missense_Mutation p.R198L 0.51 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 7 139257921 139257921 C T HIPK2 Missense_Mutation p.V1117M 0.56 tolerated(0.12) benign(0.273) TCGA-XK-AAIW-01 7 139257950 139257950 G A HIPK2 Missense_Mutation p.A1107V 0.55 deleterious(0.02) benign(0.169) TCGA-XK-AAIW-01 7 139258061 139258061 G A HIPK2 Missense_Mutation p.P1070L 0.28 deleterious(0.01) possibly_damaging(0.564) TCGA-XK-AAIW-01 7 13949324 13949324 G T ETV1 Silent p.G291G 0.21 TCGA-XK-AAIW-01 7 139529239 139529239 C T TBXAS1 Missense_Mutation p.T18M 0.52 deleterious(0.03) benign(0.028) TCGA-XK-AAIW-01 7 139724415 139724415 G A PARP12 Missense_Mutation p.S684L 0.14 tolerated_low_confidence(0.33) benign(0) TCGA-XK-AAIW-01 7 139724618 139724618 C T PARP12 Silent p.T616T 0.39 TCGA-XK-AAIW-01 7 139838977 139838977 C - KDM7A Frame_Shift_Del p.E70Kfs*24 0.24 TCGA-XK-AAIW-01 7 140111851 140111851 C A RAB19 Missense_Mutation p.L127M 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 7 140301970 140301970 C T DENND2A Silent p.P76P 0.17 TCGA-XK-AAIW-01 7 140373595 140373595 G A ADCK2 Silent p.R155R 0.31 TCGA-XK-AAIW-01 7 140394680 140394680 G A ADCK2 3'UTR 0.32 TCGA-XK-AAIW-01 7 141427171 141427171 G A WEE2 Missense_Mutation p.R487Q 0.43 tolerated(0.3) probably_damaging(0.938) TCGA-XK-AAIW-01 7 141490986 141490986 G A TAS2R5 Silent p.G275G 0.28 TCGA-XK-AAIW-01 7 141619474 141619474 G A OR9A4 Missense_Mutation p.A267T 0.39 tolerated(0.06) probably_damaging(0.979) TCGA-XK-AAIW-01 7 141750044 141750044 C T MGAM Missense_Mutation p.A866V 0.23 tolerated(0.06) benign(0.001) TCGA-XK-AAIW-01 7 14188753 14188753 G T DGKB 3'UTR 0.39 TCGA-XK-AAIW-01 7 141954939 141954939 G A PRSS58 Silent p.Y124Y 0.22 TCGA-XK-AAIW-01 7 142459692 142459692 G A PRSS1 Missense_Mutation p.A90T 0.46 tolerated(0.22) benign(0.222) TCGA-XK-AAIW-01 7 142560969 142560969 C T EPHB6 5'UTR 0.43 TCGA-XK-AAIW-01 7 142562205 142562205 C T EPHB6 Missense_Mutation p.T216M 0.53 deleterious(0.04) probably_damaging(0.982) TCGA-XK-AAIW-01 7 142562420 142562420 G A EPHB6 Missense_Mutation p.G288R 0.46 deleterious(0) possibly_damaging(0.784) TCGA-XK-AAIW-01 7 142562446 142562446 C T EPHB6 Silent p.V296V 0.31 TCGA-XK-AAIW-01 7 142564789 142564789 C T EPHB6 Silent p.Y571Y 0.40 TCGA-XK-AAIW-01 7 142568000 142568000 C T EPHB6 Missense_Mutation p.P881S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 7 142605796 142605796 C T TRPV5 Missense_Mutation p.A692T 0.48 tolerated(1) benign(0) TCGA-XK-AAIW-01 7 142606707 142606707 C T TRPV5 Missense_Mutation p.R615H 0.39 deleterious(0.02) benign(0.082) TCGA-XK-AAIW-01 7 142643378 142643378 G A KEL Silent p.C410C 0.38 TCGA-XK-AAIW-01 7 142836256 142836256 C T PIP Missense_Mutation p.T97I 0.19 deleterious(0.01) possibly_damaging(0.553) TCGA-XK-AAIW-01 7 142961231 142961231 G A GSTK1 Missense_Mutation p.S42N 0.53 deleterious(0.02) possibly_damaging(0.811) TCGA-XK-AAIW-01 7 143018815 143018815 A G CLCN1 Silent p.G190G 0.14 TCGA-XK-AAIW-01 7 143085619 143085619 G A ZYX Silent p.A394A 0.49 TCGA-XK-AAIW-01 7 143091383 143091383 G T EPHA1 Silent p.I802I 0.39 TCGA-XK-AAIW-01 7 143095461 143095461 G A EPHA1 Nonsense_Mutation p.R473* 0.44 TCGA-XK-AAIW-01 7 143096356 143096356 C T EPHA1 Missense_Mutation p.C329Y 0.36 deleterious(0) probably_damaging(0.943) TCGA-XK-AAIW-01 7 143096397 143096397 G A EPHA1 Silent p.S315S 0.32 TCGA-XK-AAIW-01 7 143096842 143096842 C T EPHA1 Missense_Mutation p.R246H 0.31 deleterious(0.03) possibly_damaging(0.822) TCGA-XK-AAIW-01 7 143097138 143097138 C T EPHA1 Silent p.T147T 0.45 TCGA-XK-AAIW-01 7 143633212 143633212 A G OR2F2 Missense_Mutation p.E296G 0.37 deleterious(0) possibly_damaging(0.721) TCGA-XK-AAIW-01 7 143793006 143793006 G A OR2A12 Missense_Mutation p.R269Q 0.38 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 7 144060434 144060434 C A ARHGEF5 Silent p.P224P 0.20 TCGA-XK-AAIW-01 7 144070324 144070324 C T ARHGEF5 Nonsense_Mutation p.R1363* 0.33 TCGA-XK-AAIW-01 7 147092700 147092700 G T CNTNAP2 Splice_Site p.X500_splice 0.14 TCGA-XK-AAIW-01 7 1481957 1481957 C T MICALL2 Missense_Mutation p.A528T 0.43 tolerated(0.17) benign(0.025) TCGA-XK-AAIW-01 7 148427245 148427245 G A CUL1 Missense_Mutation p.G11S 0.44 tolerated(0.26) benign(0.037) TCGA-XK-AAIW-01 7 148457470 148457470 C T CUL1 Missense_Mutation p.T224M 0.34 deleterious(0.04) benign(0.028) TCGA-XK-AAIW-01 7 149129128 149129128 C T ZNF777 Silent p.S745S 0.40 TCGA-XK-AAIW-01 7 149174839 149174839 C T ZNF746 Silent p.G176G 0.48 TCGA-XK-AAIW-01 7 149416750 149416750 G A KRBA1 Silent p.T7T 0.50 TCGA-XK-AAIW-01 7 149430775 149430775 C T KRBA1 Missense_Mutation p.A910V 0.50 tolerated(1) probably_damaging(0.971) TCGA-XK-AAIW-01 7 149461873 149461873 G A ZNF467 Missense_Mutation p.P573L 0.43 tolerated(0.12) benign(0.08) TCGA-XK-AAIW-01 7 149462733 149462733 G A ZNF467 Silent p.H286H 0.45 TCGA-XK-AAIW-01 7 149477549 149477549 C T SSPO RNA 0.39 TCGA-XK-AAIW-01 7 149482663 149482663 G A SSPO RNA 0.36 TCGA-XK-AAIW-01 7 149485513 149485513 G A SSPO RNA 0.38 TCGA-XK-AAIW-01 7 149486411 149486411 C T SSPO RNA 0.28 TCGA-XK-AAIW-01 7 149500345 149500345 C T SSPO RNA 0.40 TCGA-XK-AAIW-01 7 149515194 149515194 C T SSPO Intron 0.50 TCGA-XK-AAIW-01 7 149558272 149558272 G A ZNF862 Missense_Mutation p.V675I 0.33 tolerated(0.92) benign(0.003) TCGA-XK-AAIW-01 7 149558856 149558856 C T ZNF862 Silent p.N869N 0.62 TCGA-XK-AAIW-01 7 150034640 150034640 C A LRRC61 Nonsense_Mutation p.C230* 0.45 TCGA-XK-AAIW-01 7 150036112 150036112 C T RARRES2 Missense_Mutation p.R113Q 0.32 tolerated(0.1) possibly_damaging(0.463) TCGA-XK-AAIW-01 7 150069766 150069766 G A REPIN1 Missense_Mutation p.R536H 0.42 deleterious(0) probably_damaging(0.993) TCGA-XK-AAIW-01 7 150069895 150069895 G A REPIN1 Missense_Mutation p.R579H 0.39 deleterious(0.01) probably_damaging(0.993) TCGA-XK-AAIW-01 7 150093913 150093913 G A ZNF775 Missense_Mutation p.R115K 0.64 tolerated(0.06) probably_damaging(0.99) TCGA-XK-AAIW-01 7 150094021 150094021 C T ZNF775 Missense_Mutation p.A151V 0.41 tolerated(0.39) benign(0.061) TCGA-XK-AAIW-01 7 150095097 150095097 G A ZNF775 Missense_Mutation p.G510S 0.44 tolerated(0.55) possibly_damaging(0.548) TCGA-XK-AAIW-01 7 150324914 150324914 C A GIMAP6 Missense_Mutation p.G258C 0.36 deleterious(0.01) probably_damaging(0.947) TCGA-XK-AAIW-01 7 150643989 150643989 G A KCNH2 Silent p.T1102T 0.41 TCGA-XK-AAIW-01 7 150654454 150654454 C T KCNH2 Silent p.S351S 0.38 TCGA-XK-AAIW-01 7 150704235 150704235 C T NOS3 Silent p.C661C 0.36 TCGA-XK-AAIW-01 7 150742338 150742338 G A ABCB8 Missense_Mutation p.A687T 0.37 tolerated(0.4) benign(0.052) TCGA-XK-AAIW-01 7 150767909 150767909 C T SLC4A2 Missense_Mutation p.R554C 0.45 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 7 150845879 150845879 C T GBX1 Missense_Mutation p.A297T 0.27 deleterious(0.03) possibly_damaging(0.459) TCGA-XK-AAIW-01 7 150935155 150935155 G T CHPF2 Missense_Mutation p.E569D 0.13 tolerated(0.49) benign(0.028) TCGA-XK-AAIW-01 7 151135186 151135186 C T CRYGN Missense_Mutation p.D56N 0.58 tolerated(0.64) benign(0.047) TCGA-XK-AAIW-01 7 151836804 151836804 G A KMT2C Nonsense_Mutation p.R4806* 0.35 TCGA-XK-AAIW-01 7 151860707 151860707 C A KMT2C Missense_Mutation p.V3319F 0.44 possibly_damaging(0.655) TCGA-XK-AAIW-01 7 151874059 151874059 G A KMT2C Silent p.L2827L 0.33 TCGA-XK-AAIW-01 7 151879308 151879308 C T KMT2C Silent p.P1879P 0.47 TCGA-XK-AAIW-01 7 151917819 151917819 G A KMT2C Silent p.D1167D 0.45 TCGA-XK-AAIW-01 7 151921189 151921189 G A KMT2C Silent p.C1078C 0.21 TCGA-XK-AAIW-01 7 1522221 1522221 G A INTS1 Missense_Mutation p.R1222C 0.48 deleterious(0) possibly_damaging(0.832) TCGA-XK-AAIW-01 7 152522194 152522194 G A ACTR3B Missense_Mutation p.R313H 0.23 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 7 15405839 15405839 C T AGMO Silent p.S361S 0.38 TCGA-XK-AAIW-01 7 154143322 154143322 G A DPP6 Silent p.P89P 0.42 TCGA-XK-AAIW-01 7 154379709 154379709 G A DPP6 Intron 0.34 TCGA-XK-AAIW-01 7 154767949 154767949 G A PAXIP1 Silent p.D177D 0.49 TCGA-XK-AAIW-01 7 154863323 154863323 C T HTR5A Silent p.S238S 0.29 TCGA-XK-AAIW-01 7 155255122 155255122 C T EN2 Missense_Mutation p.R248C 0.14 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 7 155534615 155534615 G A RBM33 Missense_Mutation p.V718M 0.43 deleterious(0.04) unknown(0) TCGA-XK-AAIW-01 7 155537713 155537713 G A RBM33 Missense_Mutation p.R799H 0.30 deleterious(0) unknown(0) TCGA-XK-AAIW-01 7 156437440 156437440 C T RNF32 Missense_Mutation p.P88L 0.32 tolerated(0.05) possibly_damaging(0.596) TCGA-XK-AAIW-01 7 156549095 156549095 C T LMBR1 Missense_Mutation p.R250Q 0.33 deleterious(0.01) benign(0.221) TCGA-XK-AAIW-01 7 156752697 156752698 - A NOM1 Frame_Shift_Ins p.L490Tfs*11 0.30 TCGA-XK-AAIW-01 7 156754894 156754894 G A NOM1 Missense_Mutation p.R561H 0.35 deleterious(0) probably_damaging(0.985) TCGA-XK-AAIW-01 7 156798500 156798500 G A MNX1 Missense_Mutation p.A307V 0.31 tolerated(0.06) probably_damaging(0.939) TCGA-XK-AAIW-01 7 157000543 157000543 G T UBE3C Missense_Mutation p.A575S 0.40 tolerated(0.05) probably_damaging(0.926) TCGA-XK-AAIW-01 7 157041158 157041158 G A UBE3C Missense_Mutation p.A860T 0.07 deleterious(0.01) probably_damaging(0.929) TCGA-XK-AAIW-01 7 157178351 157178351 G A DNAJB6 Intron 0.39 TCGA-XK-AAIW-01 7 1586670 1586670 G A TMEM184A Missense_Mutation p.T387I 0.54 tolerated(0.18) benign(0.006) TCGA-XK-AAIW-01 7 1587403 1587403 G A TMEM184A Silent p.Y329Y 0.30 TCGA-XK-AAIW-01 7 1608765 1608765 C T PSMG3 Missense_Mutation p.D71N 0.38 deleterious(0.03) possibly_damaging(0.635) TCGA-XK-AAIW-01 7 16255713 16255713 C T ISPD Missense_Mutation p.G410E 0.19 deleterious(0) probably_damaging(0.98) TCGA-XK-AAIW-01 7 16839397 16839397 C T AGR2 Missense_Mutation p.A101T 0.30 deleterious(0.01) possibly_damaging(0.831) TCGA-XK-AAIW-01 7 17861183 17861183 G T SNX13 Silent p.T598T 0.31 TCGA-XK-AAIW-01 7 18067046 18067046 A G PRPS1L1 Silent p.G120G 0.20 TCGA-XK-AAIW-01 7 18067098 18067098 C T PRPS1L1 Missense_Mutation p.S103N 0.15 deleterious(0.03) benign(0.002) TCGA-XK-AAIW-01 7 1937867 1937867 G A MAD1L1 Missense_Mutation p.A656V 0.40 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 7 2020131 2020131 C T MAD1L1 Missense_Mutation p.E488K 0.41 tolerated(0.13) benign(0.214) TCGA-XK-AAIW-01 7 20449610 20449610 G A ITGB8 Missense_Mutation p.C767Y 0.12 deleterious(0) probably_damaging(0.931) TCGA-XK-AAIW-01 7 20721257 20721257 C T ABCB5 Nonsense_Mutation p.R613* 0.45 TCGA-XK-AAIW-01 7 20766690 20766690 C T ABCB5 Missense_Mutation p.R885C 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-XK-AAIW-01 7 21469341 21469341 T C SP4 Silent p.S186S 0.45 TCGA-XK-AAIW-01 7 21469853 21469853 G A SP4 Missense_Mutation p.R357H 0.33 tolerated(0.26) benign(0) TCGA-XK-AAIW-01 7 21550751 21550751 C T SP4 Missense_Mutation p.A740V 0.52 tolerated(0.1) possibly_damaging(0.543) TCGA-XK-AAIW-01 7 21628905 21628905 C T DNAH11 Missense_Mutation p.R685C 0.46 benign(0.002) TCGA-XK-AAIW-01 7 21827038 21827038 C T DNAH11 Missense_Mutation p.A3261V 0.30 possibly_damaging(0.905) TCGA-XK-AAIW-01 7 2259032 2259032 C T MAD1L1 Silent p.E177E 0.50 TCGA-XK-AAIW-01 7 22862308 22862308 C T TOMM7 Missense_Mutation p.V31M 0.50 deleterious(0.04) benign(0.258) TCGA-XK-AAIW-01 7 23205409 23205409 C T KLHL7 Silent p.G343G 0.20 TCGA-XK-AAIW-01 7 23235498 23235498 C T NUPL2 Silent p.Y162Y 0.36 TCGA-XK-AAIW-01 7 23351910 23351910 G A IGF2BP3 3'UTR 0.35 TCGA-XK-AAIW-01 7 24705640 24705640 G A MPP6 Missense_Mutation p.G295E 0.44 tolerated(0.21) benign(0.087) TCGA-XK-AAIW-01 7 2473641 2473641 G A CHST12 3'UTR 0.24 TCGA-XK-AAIW-01 7 24742390 24742390 G A DFNA5 Silent p.L416L 0.31 TCGA-XK-AAIW-01 7 24849506 24849506 G A OSBPL3 Missense_Mutation p.A746V 0.43 tolerated(1) benign(0.001) TCGA-XK-AAIW-01 7 25175697 25175697 C T C7orf31 Missense_Mutation p.R556H 0.09 tolerated(0.3) benign(0.011) TCGA-XK-AAIW-01 7 2564899 2564899 G A LFNG Silent p.A176A 0.71 TCGA-XK-AAIW-01 7 2578022 2578022 G A BRAT1 Missense_Mutation p.A716V 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 7 27142053 27142053 T A HOXA2 Missense_Mutation p.T23S 0.34 deleterious(0.01) benign(0.172) TCGA-XK-AAIW-01 7 27147884 27147884 G A HOXA3 Missense_Mutation p.R328C 0.50 deleterious(0) benign(0.337) TCGA-XK-AAIW-01 7 27148262 27148262 G A HOXA3 Nonsense_Mutation p.Q202* 0.35 TCGA-XK-AAIW-01 7 27169057 27169057 G A HOXA4 Silent p.H250H 0.31 TCGA-XK-AAIW-01 7 27169077 27169077 G A HOXA4 Missense_Mutation p.R244C 0.38 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 7 2740187 2740187 C T AMZ1 Silent p.S34S 0.36 TCGA-XK-AAIW-01 7 2752068 2752068 C T AMZ1 Silent p.G351G 0.45 TCGA-XK-AAIW-01 7 2752321 2752321 G A AMZ1 Missense_Mutation p.A436T 0.32 deleterious_low_confidence(0.02) benign(0.427) TCGA-XK-AAIW-01 7 27797681 27797681 C T TAX1BP1 Missense_Mutation p.T65M 0.26 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 7 27827122 27827122 G T TAX1BP1 Missense_Mutation p.S313I 0.48 tolerated(0.09) benign(0.143) TCGA-XK-AAIW-01 7 27872571 27872571 C T JAZF1 Missense_Mutation p.A194T 0.36 deleterious(0.01) possibly_damaging(0.744) TCGA-XK-AAIW-01 7 2946240 2946240 G A CARD11 3'UTR 0.29 TCGA-XK-AAIW-01 7 2959037 2959037 G T CARD11 Missense_Mutation p.L827M 0.43 deleterious(0.02) benign(0.266) TCGA-XK-AAIW-01 7 2962899 2962899 G A CARD11 Missense_Mutation p.T670M 0.28 tolerated(0.06) benign(0.026) TCGA-XK-AAIW-01 7 2978406 2978406 G A CARD11 Silent p.D308D 0.18 TCGA-XK-AAIW-01 7 2987233 2987233 G T CARD11 Missense_Mutation p.L66M 0.37 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 7 30094928 30094928 G A PLEKHA8 Missense_Mutation p.A337T 0.25 tolerated(0.06) benign(0.074) TCGA-XK-AAIW-01 7 30465327 30465327 C T NOD1 Splice_Site p.X930_splice 0.32 TCGA-XK-AAIW-01 7 30469004 30469004 G A NOD1 Silent p.G925G 0.35 TCGA-XK-AAIW-01 7 30492455 30492455 T A NOD1 Missense_Mutation p.E193V 0.39 deleterious(0.04) benign(0.017) TCGA-XK-AAIW-01 7 30705216 30705216 C T CRHR2 Missense_Mutation p.V146I 0.44 tolerated(1) benign(0.005) TCGA-XK-AAIW-01 7 30931646 30931646 G A FAM188B 3'UTR 0.43 TCGA-XK-AAIW-01 7 31736606 31736606 G T PPP1R17 Missense_Mutation p.R88I 0.41 deleterious_low_confidence(0) possibly_damaging(0.724) TCGA-XK-AAIW-01 7 33136124 33136124 G A RP9 Nonsense_Mutation p.R150* 0.45 TCGA-XK-AAIW-01 7 34118619 34118619 G A BMPER Missense_Mutation p.R410H 0.37 deleterious(0) probably_damaging(0.915) TCGA-XK-AAIW-01 7 35288352 35288352 C A TBX20 Missense_Mutation p.R161L 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 7 35913364 35913364 T C SEPT7 Missense_Mutation p.F165S 0.20 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 7 37136300 37136300 C T ELMO1 Silent p.K408K 0.34 TCGA-XK-AAIW-01 7 37780645 37780645 C T GPR141 Missense_Mutation p.S217F 0.34 deleterious(0) possibly_damaging(0.447) TCGA-XK-AAIW-01 7 37988562 37988562 C T EPDR1 Silent p.N130N 0.31 TCGA-XK-AAIW-01 7 38725623 38725623 G A FAM183B 5'UTR 0.52 TCGA-XK-AAIW-01 7 38791805 38791805 G A VPS41 Nonsense_Mutation p.R633* 0.43 TCGA-XK-AAIW-01 7 38805233 38805233 C T VPS41 Missense_Mutation p.A426T 0.17 tolerated(0.16) benign(0.001) TCGA-XK-AAIW-01 7 39612284 39612284 A G YAE1D1 Silent p.L220L 0.45 TCGA-XK-AAIW-01 7 40133805 40133805 G A CDK13 Silent p.L1255L 0.34 TCGA-XK-AAIW-01 7 4198177 4198177 C T SDK1 Nonsense_Mutation p.Q1575* 0.32 TCGA-XK-AAIW-01 7 42005853 42005853 G A GLI3 Missense_Mutation p.P940S 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAIW-01 7 4285377 4285377 C T SDK1 Silent p.G2107G 0.42 TCGA-XK-AAIW-01 7 43483842 43483842 C T HECW1 Silent p.T357T 0.48 TCGA-XK-AAIW-01 7 43484781 43484781 C T HECW1 Silent p.C670C 0.37 TCGA-XK-AAIW-01 7 43540349 43540349 G A HECW1 Silent p.L1163L 0.36 TCGA-XK-AAIW-01 7 43918563 43918563 C T URGCP Missense_Mutation p.D167N 0.45 tolerated(0.19) possibly_damaging(0.614) TCGA-XK-AAIW-01 7 44102514 44102514 G A PGAM2 Missense_Mutation p.A204V 0.45 tolerated(0.25) benign(0.062) TCGA-XK-AAIW-01 7 44104760 44104760 C T PGAM2 Silent p.P123P 0.37 TCGA-XK-AAIW-01 7 44151145 44151145 C T AEBP1 Missense_Mutation p.R586C 0.36 deleterious(0.01) probably_damaging(0.995) TCGA-XK-AAIW-01 7 44154942 44154942 C T POLD2 Missense_Mutation p.V401I 0.11 tolerated(0.23) benign(0.327) TCGA-XK-AAIW-01 7 44185141 44185141 C T GCK Missense_Mutation p.R404H 0.52 tolerated(0.15) benign(0.002) TCGA-XK-AAIW-01 7 44553152 44553152 C T NPC1L1 Missense_Mutation p.R1325Q 0.17 tolerated(0.69) benign(0.001) TCGA-XK-AAIW-01 7 44575866 44575866 A G NPC1L1 Missense_Mutation p.F615L 0.15 deleterious(0) benign(0.354) TCGA-XK-AAIW-01 7 44575991 44575991 G A NPC1L1 Missense_Mutation p.T573M 0.34 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 7 44579810 44579810 C T NPC1L1 Silent p.P62P 0.33 TCGA-XK-AAIW-01 7 44612296 44612296 C T DDX56 Missense_Mutation p.R144H 0.57 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 7 44685060 44685060 C T OGDH Silent p.N119N 0.43 TCGA-XK-AAIW-01 7 44733588 44733588 C T OGDH Silent p.D500D 0.46 TCGA-XK-AAIW-01 7 44796659 44796659 G A ZMIZ2 Silent p.A93A 0.14 TCGA-XK-AAIW-01 7 44799758 44799758 G A ZMIZ2 Silent p.E334E 0.41 TCGA-XK-AAIW-01 7 44800044 44800044 C T ZMIZ2 Silent p.G364G 0.29 TCGA-XK-AAIW-01 7 45077977 45077977 C T CCM2 Silent p.R73R 0.42 TCGA-XK-AAIW-01 7 45216944 45216944 G A RAMP3 Missense_Mutation p.G32D 0.27 tolerated(0.2) benign(0.201) TCGA-XK-AAIW-01 7 45932601 45932601 G A IGFBP1 Missense_Mutation p.V231I 0.40 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 7 47344500 47344500 G C TNS3 Missense_Mutation p.P918A 0.32 tolerated(0.09) benign(0.141) TCGA-XK-AAIW-01 7 47835606 47835606 G A PKD1L1 Missense_Mutation p.A2779V 0.15 tolerated(0.17) benign(0.029) TCGA-XK-AAIW-01 7 47955158 47955158 A G PKD1L1 Missense_Mutation p.S367P 0.19 tolerated(0.37) benign(0.024) TCGA-XK-AAIW-01 7 47955197 47955197 C A PKD1L1 Splice_Site p.X354_splice 0.28 TCGA-XK-AAIW-01 7 47988033 47988033 G A PKD1L1 Missense_Mutation p.A2V 0.42 tolerated_low_confidence(0.15) benign(0.002) TCGA-XK-AAIW-01 7 48147888 48147888 C T UPP1 Silent p.S289S 0.42 TCGA-XK-AAIW-01 7 4825902 4825902 C T AP5Z1 Missense_Mutation p.S385L 0.47 tolerated(0.05) benign(0.071) TCGA-XK-AAIW-01 7 4825975 4825975 A T AP5Z1 Missense_Mutation p.E409D 0.39 tolerated(0.19) benign(0.283) TCGA-XK-AAIW-01 7 4830482 4830482 C T AP5Z1 Missense_Mutation p.T706M 0.59 deleterious(0) probably_damaging(0.969) TCGA-XK-AAIW-01 7 48314266 48314266 G A ABCA13 Missense_Mutation p.R1668H 0.40 benign(0.001) TCGA-XK-AAIW-01 7 4856948 4856948 C T RADIL Silent p.T550T 0.32 TCGA-XK-AAIW-01 7 4901260 4901260 C T PAPOLB Missense_Mutation p.R60H 0.24 tolerated(1) benign(0.028) TCGA-XK-AAIW-01 7 4917279 4917279 G A RADIL Silent p.D164D 0.29 TCGA-XK-AAIW-01 7 5024619 5024619 C T RBAK-RBAKDN 5'UTR 0.40 TCGA-XK-AAIW-01 7 50467923 50467923 C T IKZF1 Silent p.R344R 0.50 TCGA-XK-AAIW-01 7 50514009 50514009 T - FIGNL1 Frame_Shift_Del p.K326Sfs*3 0.32 TCGA-XK-AAIW-01 7 51152950 51152950 C T COBL Missense_Mutation p.A337T 0.23 tolerated(0.11) probably_damaging(1) TCGA-XK-AAIW-01 7 5167333 5167333 C T ZNF890P RNA 0.27 TCGA-XK-AAIW-01 7 53103572 53103572 C T POM121L12 Missense_Mutation p.R70C 0.38 deleterious(0) probably_damaging(0.942) TCGA-XK-AAIW-01 7 540110 540110 G A PDGFA Missense_Mutation p.R203W 0.27 tolerated(0.07) benign(0.002) TCGA-XK-AAIW-01 7 5413695 5413695 G T TNRC18 Missense_Mutation p.L1074M 0.31 probably_damaging(0.999) TCGA-XK-AAIW-01 7 55221778 55221778 G A EGFR Silent p.T274T 0.49 TCGA-XK-AAIW-01 7 5541110 5541110 C T FBXL18 Missense_Mutation p.A264T 0.46 tolerated(0.1) probably_damaging(0.999) TCGA-XK-AAIW-01 7 5541627 5541627 C T FBXL18 Silent p.E91E 0.43 TCGA-XK-AAIW-01 7 5568090 5568090 G A ACTB Silent p.I208I 0.39 TCGA-XK-AAIW-01 7 56146174 56146174 C T SUMF2 Intron 0.32 TCGA-XK-AAIW-01 7 56172109 56172109 G A CHCHD2 Missense_Mutation p.A37V 0.30 tolerated(0.44) unknown(0) TCGA-XK-AAIW-01 7 5643653 5643653 A C FSCN1 Missense_Mutation p.N424T 0.39 tolerated(0.2) benign(0.203) TCGA-XK-AAIW-01 7 5662580 5662580 G A RNF216 Missense_Mutation p.R895W 0.43 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 7 57188283 57188283 C T ZNF479 Missense_Mutation p.R280H 0.43 tolerated(0.53) benign(0.002) TCGA-XK-AAIW-01 7 57522854 57522854 A G ZNF716 Missense_Mutation p.E81G 0.30 deleterious(0.03) benign(0.372) TCGA-XK-AAIW-01 7 5800647 5800647 G A RNF216 Silent p.C18C 0.35 TCGA-XK-AAIW-01 7 590210 590210 G A PRKAR1B Missense_Mutation p.R335W 0.25 deleterious(0) probably_damaging(0.968) TCGA-XK-AAIW-01 7 6043354 6043354 C T PMS2 Missense_Mutation p.R107Q 0.38 deleterious(0) possibly_damaging(0.848) TCGA-XK-AAIW-01 7 6185158 6185158 C T USP42 Silent p.Y334Y 0.10 TCGA-XK-AAIW-01 7 618939 618939 A G PRKAR1B Missense_Mutation p.I282T 0.38 deleterious(0) possibly_damaging(0.557) TCGA-XK-AAIW-01 7 6210502 6210502 C T CYTH3 Missense_Mutation p.G224S 0.28 tolerated(0.05) probably_damaging(0.999) TCGA-XK-AAIW-01 7 63726748 63726748 G A ZNF679 Missense_Mutation p.G246D 0.33 deleterious(0.02) possibly_damaging(0.875) TCGA-XK-AAIW-01 7 64168355 64168355 G A ZNF107 Missense_Mutation p.G558D 0.40 deleterious(0.04) probably_damaging(0.971) TCGA-XK-AAIW-01 7 6474468 6474468 G A DAGLB Silent p.C201C 0.09 TCGA-XK-AAIW-01 7 64838858 64838858 C T ZNF92 5'UTR 0.62 TCGA-XK-AAIW-01 7 64864737 64864737 C T ZNF92 Silent p.G570G 0.34 TCGA-XK-AAIW-01 7 6639613 6639613 G A C7orf26 Missense_Mutation p.R245H 0.09 tolerated(0.16) possibly_damaging(0.715) TCGA-XK-AAIW-01 7 66458255 66458255 G T SBDS Silent p.A136A 0.35 TCGA-XK-AAIW-01 7 66479425 66479425 G A TYW1 Silent p.E149E 0.46 TCGA-XK-AAIW-01 7 66482879 66482879 G A TYW1 Missense_Mutation p.A204T 0.43 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 7 66774022 66774022 A G STAG3L4 RNA 0.41 TCGA-XK-AAIW-01 7 6836407 6836407 G A RSPH10B2 Intron 0.57 TCGA-XK-AAIW-01 7 6852656 6852656 C T CCZ1B Missense_Mutation p.D265N 0.27 tolerated(0.4) benign(0.115) TCGA-XK-AAIW-01 7 70255719 70255719 G A AUTS2 Missense_Mutation p.A1173T 0.35 deleterious(0.01) benign(0.231) TCGA-XK-AAIW-01 7 71135078 71135078 C T WBSCR17 Missense_Mutation p.T463I 0.39 tolerated(1) possibly_damaging(0.678) TCGA-XK-AAIW-01 7 72040531 72040531 G A TYW1B Silent p.D279D 0.32 TCGA-XK-AAIW-01 7 72267429 72267429 C T TYW1B Missense_Mutation p.V278M 0.29 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 7 72419417 72419417 C T POM121 3'UTR 0.15 TCGA-XK-AAIW-01 7 72643650 72643650 C T NCF1B RNA 0.36 TCGA-XK-AAIW-01 7 72657208 72657208 A - GTF2IRD2P1 RNA 0.47 TCGA-XK-AAIW-01 7 72657535 72657535 C T GTF2IRD2P1 RNA 0.39 TCGA-XK-AAIW-01 7 72718231 72718231 G A NSUN5 Silent p.G310G 0.50 TCGA-XK-AAIW-01 7 72849210 72849210 C T FZD9 Silent p.S291S 0.26 TCGA-XK-AAIW-01 7 72883849 72883849 C T BAZ1B Missense_Mutation p.R955H 0.19 tolerated(0.12) benign(0.34) TCGA-XK-AAIW-01 7 72903642 72903642 C T BAZ1B Missense_Mutation p.R258Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 7 73010560 73010560 G A MLXIPL Missense_Mutation p.R661W 0.33 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 7 73123392 73123392 C T STX1A Missense_Mutation p.D31N 0.48 tolerated(0.05) possibly_damaging(0.884) TCGA-XK-AAIW-01 7 73151925 73151925 T C ABHD11 Silent p.G143G 0.25 TCGA-XK-AAIW-01 7 73474488 73474488 C T ELN Missense_Mutation p.A532V 0.45 unknown(0) TCGA-XK-AAIW-01 7 73511051 73511051 C T LIMK1 Silent p.C84C 0.32 TCGA-XK-AAIW-01 7 73795146 73795146 C T CLIP2 Missense_Mutation p.S811L 0.43 tolerated(0.24) benign(0.028) TCGA-XK-AAIW-01 7 73811444 73811444 C T CLIP2 Missense_Mutation p.R921C 0.22 deleterious(0) possibly_damaging(0.893) TCGA-XK-AAIW-01 7 73927219 73927219 C T GTF2IRD1 Silent p.S61S 0.40 TCGA-XK-AAIW-01 7 73953041 73953041 G A GTF2IRD1 Silent p.P525P 0.35 TCGA-XK-AAIW-01 7 74212547 74212547 G A GTF2IRD2 Missense_Mutation p.A435V 0.27 tolerated(0.11) possibly_damaging(0.584) TCGA-XK-AAIW-01 7 75186962 75186962 C T HIP1 Missense_Mutation p.R526Q 0.16 tolerated(0.29) benign(0.001) TCGA-XK-AAIW-01 7 75511511 75511511 C A RHBDD2 Silent p.T181T 0.38 TCGA-XK-AAIW-01 7 75517369 75517369 G T RHBDD2 Missense_Mutation p.S266I 0.37 tolerated(0.39) benign(0.157) TCGA-XK-AAIW-01 7 75609690 75609690 G A POR Missense_Mutation p.A134T 0.50 tolerated(0.07) benign(0.015) TCGA-XK-AAIW-01 7 75621505 75621505 C A STYXL1 3'Flank 0.52 TCGA-XK-AAIW-01 7 75630243 75630243 C A STYXL1 Missense_Mutation p.A259S 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-XK-AAIW-01 7 75686750 75686750 G A MDH2 Silent p.L86L 0.31 TCGA-XK-AAIW-01 7 76054468 76054468 G A ZP3 Missense_Mutation p.G63R 0.43 deleterious(0.01) possibly_damaging(0.817) TCGA-XK-AAIW-01 7 77268671 77268671 C G PTPN12 3'UTR 0.27 TCGA-XK-AAIW-01 7 77764474 77764474 G T MAGI2 Silent p.R965R 0.31 TCGA-XK-AAIW-01 7 80292376 80292376 C T CD36 Missense_Mutation p.S167F 0.43 deleterious(0.02) probably_damaging(0.961) TCGA-XK-AAIW-01 7 80433528 80433528 C T SEMA3C Missense_Mutation p.G232D 0.44 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 7 81381467 81381467 G A HGF Silent p.Y198Y 0.32 TCGA-XK-AAIW-01 7 81626555 81626555 A T CACNA2D1 Silent p.S534S 0.39 TCGA-XK-AAIW-01 7 825228 825228 C T HEATR2 Missense_Mutation p.R836C 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-XK-AAIW-01 7 82544757 82544757 G A PCLO Missense_Mutation p.A4182V 0.08 unknown(0) TCGA-XK-AAIW-01 7 82582023 82582023 G T PCLO Missense_Mutation p.A2749D 0.11 unknown(0) TCGA-XK-AAIW-01 7 82582879 82582879 T C PCLO Missense_Mutation p.T2464A 0.54 unknown(0) TCGA-XK-AAIW-01 7 82584469 82584469 C T PCLO Missense_Mutation p.A1934T 0.18 unknown(0) TCGA-XK-AAIW-01 7 82585993 82585993 T C PCLO Missense_Mutation p.T1426A 0.56 unknown(0) TCGA-XK-AAIW-01 7 82595421 82595421 C T PCLO Missense_Mutation p.R1228H 0.44 unknown(0) TCGA-XK-AAIW-01 7 82764162 82764162 A G PCLO Missense_Mutation p.S902P 0.33 unknown(0) TCGA-XK-AAIW-01 7 82997121 82997121 C T SEMA3E Silent p.S703S 0.38 TCGA-XK-AAIW-01 7 84628868 84628868 C A SEMA3D Missense_Mutation p.R741I 0.11 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 7 84644455 84644455 G A SEMA3D Silent p.C541C 0.41 TCGA-XK-AAIW-01 7 84694864 84694864 C T SEMA3D Silent p.E198E 0.31 TCGA-XK-AAIW-01 7 84751069 84751069 G A SEMA3D Silent p.L47L 0.36 TCGA-XK-AAIW-01 7 86415812 86415812 G A GRM3 Missense_Mutation p.R235H 0.38 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 7 86493714 86493714 C T GRM3 3'UTR 0.21 TCGA-XK-AAIW-01 7 86541553 86541553 C T KIAA1324L Silent p.S668S 0.32 TCGA-XK-AAIW-01 7 86991077 86991077 T A CROT Silent p.T180T 0.41 TCGA-XK-AAIW-01 7 87080982 87080982 G A ABCB4 Missense_Mutation p.A222V 0.18 deleterious(0.02) probably_damaging(0.911) TCGA-XK-AAIW-01 7 87133634 87133634 C A ABCB1 Silent p.T1256T 0.39 TCGA-XK-AAIW-01 7 87138668 87138668 G A ABCB1 Missense_Mutation p.R1138W 0.33 deleterious(0) benign(0.236) TCGA-XK-AAIW-01 7 87179861 87179861 G A ABCB1 Missense_Mutation p.H383Y 0.12 tolerated(1) benign(0) TCGA-XK-AAIW-01 7 87196170 87196170 G T ABCB1 Missense_Mutation p.A154D 0.33 deleterious(0.02) probably_damaging(0.922) TCGA-XK-AAIW-01 7 87757933 87757933 G A ADAM22 Missense_Mutation p.R232H 0.34 tolerated(0.15) benign(0.117) TCGA-XK-AAIW-01 7 87816006 87816006 C T ADAM22 Intron 0.32 TCGA-XK-AAIW-01 7 87846500 87846500 G A SRI Nonsense_Mutation p.Q48* 0.33 TCGA-XK-AAIW-01 7 883102 883102 C T SUN1 Silent p.H201H 0.12 TCGA-XK-AAIW-01 7 88965976 88965976 G A ZNF804B Missense_Mutation p.S1227N 0.29 tolerated(0.27) benign(0.003) TCGA-XK-AAIW-01 7 893152 893152 C T SUN1 Missense_Mutation p.T387I 0.15 deleterious(0.03) possibly_damaging(0.72) TCGA-XK-AAIW-01 7 90006927 90006927 T A GTPBP10 Missense_Mutation p.V233D 0.48 deleterious(0) probably_damaging(0.961) TCGA-XK-AAIW-01 7 90356036 90356036 G A CDK14 Silent p.V75V 0.40 TCGA-XK-AAIW-01 7 90895851 90895851 C T FZD1 Silent p.I552I 0.41 TCGA-XK-AAIW-01 7 91630560 91630560 G T AKAP9 Missense_Mutation p.Q443H 0.17 probably_damaging(0.983) TCGA-XK-AAIW-01 7 91670089 91670089 C T AKAP9 Silent p.Y1598Y 0.27 TCGA-XK-AAIW-01 7 91687576 91687576 G A AKAP9 Intron 0.23 TCGA-XK-AAIW-01 7 91708964 91708964 G A AKAP9 Missense_Mutation p.S2506N 0.23 benign(0.005) TCGA-XK-AAIW-01 7 91709345 91709345 A - AKAP9 Frame_Shift_Del p.N2635Mfs*3 0.31 TCGA-XK-AAIW-01 7 92134102 92134102 G T PEX1 Missense_Mutation p.A672D 0.35 deleterious(0.02) benign(0.281) TCGA-XK-AAIW-01 7 92147233 92147233 A T PEX1 Missense_Mutation p.L199H 0.45 tolerated(0.19) benign(0.002) TCGA-XK-AAIW-01 7 92163971 92163971 T C RBM48 Missense_Mutation p.M235T 0.37 tolerated(0.51) benign(0.021) TCGA-XK-AAIW-01 7 92763742 92763742 G A SAMD9L Missense_Mutation p.H515Y 0.48 tolerated(1) benign(0.005) TCGA-XK-AAIW-01 7 92818563 92818563 G A HEPACAM2 3'UTR 0.38 TCGA-XK-AAIW-01 7 92848481 92848481 G A HEPACAM2 Silent p.I121I 0.29 TCGA-XK-AAIW-01 7 92935164 92935164 C T CCDC132 Missense_Mutation p.R493C 0.41 tolerated(0.06) possibly_damaging(0.893) TCGA-XK-AAIW-01 7 92970798 92970798 G A CCDC132 Silent p.V706V 0.13 TCGA-XK-AAIW-01 7 93073027 93073027 C T CALCR Missense_Mutation p.A265T 0.37 tolerated(0.38) possibly_damaging(0.547) TCGA-XK-AAIW-01 7 94039099 94039099 G A COL1A2 Missense_Mutation p.G334D 0.31 unknown(0) TCGA-XK-AAIW-01 7 94050332 94050332 T C COL1A2 Silent p.G769G 0.29 TCGA-XK-AAIW-01 7 94750100 94750100 C T PPP1R9A Silent p.F535F 0.38 TCGA-XK-AAIW-01 7 94855316 94855316 C A PPP1R9A Missense_Mutation p.P667H 0.35 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 7 95775911 95775911 G T SLC25A13 Missense_Mutation p.A471D 0.38 deleterious(0) probably_damaging(0.975) TCGA-XK-AAIW-01 7 96747188 96747188 G T ACN9 Missense_Mutation p.Q51H 0.51 deleterious(0.05) possibly_damaging(0.868) TCGA-XK-AAIW-01 7 96810494 96810494 T C ACN9 Silent p.F115F 0.28 TCGA-XK-AAIW-01 7 97363108 97363108 G A TAC1 Missense_Mutation p.G66E 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 7 97933678 97933678 C T BAIAP2L1 Missense_Mutation p.V418M 0.48 tolerated(0.22) benign(0.209) TCGA-XK-AAIW-01 7 98519495 98519495 C T TRRAP Silent p.Y914Y 0.35 TCGA-XK-AAIW-01 7 98558974 98558974 C A TRRAP Missense_Mutation p.L2187I 0.47 possibly_damaging(0.685) TCGA-XK-AAIW-01 7 98565172 98565172 C T TRRAP Missense_Mutation p.R2448C 0.39 benign(0.185) TCGA-XK-AAIW-01 7 98633252 98633252 C T SMURF1 Missense_Mutation p.V659M 0.42 deleterious(0) probably_damaging(0.978) TCGA-XK-AAIW-01 7 98634699 98634699 C T SMURF1 Silent p.K626K 0.32 TCGA-XK-AAIW-01 7 98983333 98983333 C T ARPC1B 5'UTR 0.33 TCGA-XK-AAIW-01 7 99084395 99084395 C A ZNF789 Missense_Mutation p.L188I 0.49 deleterious(0.01) possibly_damaging(0.871) TCGA-XK-AAIW-01 7 99084663 99084663 G T ZNF789 Missense_Mutation p.R277M 0.46 deleterious(0) possibly_damaging(0.8) TCGA-XK-AAIW-01 7 99110082 99110082 G A ZKSCAN5 Missense_Mutation p.A141T 0.41 tolerated(0.22) benign(0.004) TCGA-XK-AAIW-01 7 99129371 99129371 C T ZKSCAN5 Silent p.Y673Y 0.06 TCGA-XK-AAIW-01 7 99170592 99170592 C A ZNF655 Missense_Mutation p.S322R 0.35 tolerated(0.59) possibly_damaging(0.504) TCGA-XK-AAIW-01 7 99171035 99171035 C T ZNF655 Missense_Mutation p.S470L 0.36 deleterious(0.01) possibly_damaging(0.519) TCGA-XK-AAIW-01 7 99565869 99565869 G A AZGP1 Silent p.Y174Y 0.54 TCGA-XK-AAIW-01 7 99569532 99569532 G T AZGP1 Missense_Mutation p.F58L 0.43 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 7 99654769 99654769 G A ZSCAN21 Missense_Mutation p.R47H 0.40 deleterious(0.03) probably_damaging(0.929) TCGA-XK-AAIW-01 7 99668884 99668884 C T ZNF3 Missense_Mutation p.S408N 0.13 tolerated(0.37) benign(0.388) TCGA-XK-AAIW-01 7 99669204 99669204 G A ZNF3 Silent p.H301H 0.27 TCGA-XK-AAIW-01 7 99672820 99672820 G T ZNF3 Missense_Mutation p.P70H 0.20 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 7 99702674 99702674 G A AP4M1 Missense_Mutation p.R227H 0.22 deleterious(0) benign(0.27) TCGA-XK-AAIW-01 7 99704333 99704333 C T AP4M1 Missense_Mutation p.A397V 0.43 tolerated(0.05) possibly_damaging(0.722) TCGA-XK-AAIW-01 7 99711885 99711885 G A TAF6 Missense_Mutation p.P20L 0.51 tolerated_low_confidence(0.14) benign(0) TCGA-XK-AAIW-01 7 99722481 99722481 C T CNPY4 Silent p.S239S 0.14 TCGA-XK-AAIW-01 7 99779743 99779743 C T STAG3 Silent p.D49D 0.59 TCGA-XK-AAIW-01 7 99918662 99918662 G A SPDYE3 3'UTR 0.21 TCGA-XK-AAIW-01 7 99956438 99956438 G A PILRB Missense_Mutation p.V64I 0.39 tolerated(0.42) benign(0.004) TCGA-XK-AAIW-01 7 99971888 99971888 C T PILRA Missense_Mutation p.R96W 0.28 deleterious(0.01) benign(0.165) TCGA-XK-AAIW-01 7 99971947 99971947 G A PILRA Silent p.L115L 0.47 TCGA-XK-AAIW-01 7 99998653 99998653 G A ZCWPW1 Missense_Mutation p.A644V 0.48 tolerated_low_confidence(0.24) benign(0.222) TCGA-XK-AAIW-01 7 99998766 99998766 G A ZCWPW1 Silent p.D606D 0.26 TCGA-XK-AAIW-01 8 100160238 100160238 G T VPS13B Missense_Mutation p.K671N 0.30 deleterious(0) probably_damaging(0.95) TCGA-XK-AAIW-01 8 100523416 100523416 C T VPS13B Missense_Mutation p.R1462C 0.27 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 8 100587894 100587894 G A VPS13B Missense_Mutation p.R1678Q 0.47 tolerated(0.16) possibly_damaging(0.885) TCGA-XK-AAIW-01 8 100654441 100654441 C A VPS13B Missense_Mutation p.L1900I 0.21 tolerated(0.22) possibly_damaging(0.899) TCGA-XK-AAIW-01 8 101020624 101020624 C T RGS22 Silent p.S780S 0.28 TCGA-XK-AAIW-01 8 101146206 101146206 G A FBXO43 Missense_Mutation p.P651S 0.37 tolerated(0.53) benign(0.241) TCGA-XK-AAIW-01 8 101154164 101154164 C T FBXO43 Silent p.E106E 0.27 TCGA-XK-AAIW-01 8 101629955 101629955 T C SNX31 Missense_Mutation p.T109A 0.51 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 8 102381497 102381497 G A NACAP1 RNA 0.33 TCGA-XK-AAIW-01 8 103293668 103293668 G A UBR5 Missense_Mutation p.R1926W 0.46 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 8 103310685 103310685 G A UBR5 Missense_Mutation p.A1120V 0.42 deleterious(0) probably_damaging(0.97) TCGA-XK-AAIW-01 8 103317441 103317441 A G UBR5 Missense_Mutation p.V900A 0.38 tolerated(0.75) benign(0.015) TCGA-XK-AAIW-01 8 104388156 104388156 T C CTHRC1 Missense_Mutation p.L114S 0.29 deleterious(0.04) benign(0.205) TCGA-XK-AAIW-01 8 104433218 104433218 C T DCAF13 Silent p.L248L 0.35 TCGA-XK-AAIW-01 8 10469158 10469158 G A RP1L1 Missense_Mutation p.A817V 0.24 benign(0.321) TCGA-XK-AAIW-01 8 104922612 104922612 G T RIMS2 Intron 0.27 TCGA-XK-AAIW-01 8 105001555 105001555 C T RIMS2 Nonsense_Mutation p.R984* 0.46 TCGA-XK-AAIW-01 8 105161034 105161034 C A RIMS2 Intron 0.39 TCGA-XK-AAIW-01 8 105260949 105260949 G A RIMS2 Missense_Mutation p.R1166H 0.46 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-XK-AAIW-01 8 105368455 105368455 G A DCSTAMP 3'UTR 0.30 TCGA-XK-AAIW-01 8 105503410 105503410 C T LRP12 Missense_Mutation p.A691T 0.35 tolerated(0.25) benign(0.001) TCGA-XK-AAIW-01 8 105503421 105503421 G A LRP12 Missense_Mutation p.A687V 0.35 deleterious(0.01) benign(0.169) TCGA-XK-AAIW-01 8 105509341 105509341 C T LRP12 Missense_Mutation p.S480N 0.35 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 8 106814118 106814118 C T ZFPM2 Missense_Mutation p.S603F 0.44 tolerated(0.05) possibly_damaging(0.569) TCGA-XK-AAIW-01 8 106814712 106814712 C T ZFPM2 Missense_Mutation p.T801I 0.26 deleterious(0.03) benign(0.19) TCGA-XK-AAIW-01 8 106814722 106814722 G A ZFPM2 Silent p.T804T 0.27 TCGA-XK-AAIW-01 8 107715136 107715136 C T OXR1 Silent p.G227G 0.33 TCGA-XK-AAIW-01 8 108970442 108970442 C T RSPO2 Missense_Mutation p.R161H 0.33 deleterious(0) possibly_damaging(0.647) TCGA-XK-AAIW-01 8 109001440 109001440 A G RSPO2 Missense_Mutation p.C43R 0.31 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 8 110456103 110456103 G A PKHD1L1 Missense_Mutation p.G1588D 0.45 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 8 110509271 110509271 G A PKHD1L1 Missense_Mutation p.C3484Y 0.63 deleterious(0.01) probably_damaging(0.987) TCGA-XK-AAIW-01 8 110509272 110509272 C T PKHD1L1 Silent p.C3484C 0.24 TCGA-XK-AAIW-01 8 110510781 110510781 C T PKHD1L1 Missense_Mutation p.R3564W 0.42 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 8 11163708 11163708 C T MTMR9 Nonsense_Mutation p.R201* 0.17 TCGA-XK-AAIW-01 8 113323358 113323358 T A CSMD3 Silent p.G2578G 0.56 TCGA-XK-AAIW-01 8 113519034 113519034 C A CSMD3 Missense_Mutation p.G1594V 0.29 deleterious(0) probably_damaging(0.982) TCGA-XK-AAIW-01 8 113529318 113529318 G A CSMD3 Silent p.T1567T 0.40 TCGA-XK-AAIW-01 8 11614576 11614576 G T GATA4 Missense_Mutation p.S377I 0.43 tolerated(0.16) benign(0.025) TCGA-XK-AAIW-01 8 116599520 116599520 C T TRPS1 Missense_Mutation p.R803H 0.16 tolerated_low_confidence(0.09) possibly_damaging(0.822) TCGA-XK-AAIW-01 8 116616449 116616449 C T TRPS1 Missense_Mutation p.G583R 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-XK-AAIW-01 8 116631818 116631818 C T TRPS1 Missense_Mutation p.M169I 0.30 deleterious_low_confidence(0.01) benign(0.034) TCGA-XK-AAIW-01 8 117954953 117954953 G A AARD 3'UTR 0.45 TCGA-XK-AAIW-01 8 118830719 118830719 C T EXT1 Nonsense_Mutation p.W529* 0.37 TCGA-XK-AAIW-01 8 120233895 120233895 G A MAL2 Nonsense_Mutation p.W67* 0.18 TCGA-XK-AAIW-01 8 120598437 120598437 C T ENPP2 Nonsense_Mutation p.W504* 0.30 TCGA-XK-AAIW-01 8 120631537 120631537 C T ENPP2 Silent p.S142S 0.32 TCGA-XK-AAIW-01 8 121015349 121015349 C T DEPTOR Silent p.S308S 0.30 TCGA-XK-AAIW-01 8 121282370 121282370 G T COL14A1 Missense_Mutation p.S1057I 0.36 deleterious(0) possibly_damaging(0.832) TCGA-XK-AAIW-01 8 121292281 121292281 G A COL14A1 Missense_Mutation p.A1197T 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 8 121518996 121518996 G A MTBP Missense_Mutation p.G593D 0.17 deleterious(0.01) possibly_damaging(0.557) TCGA-XK-AAIW-01 8 121528227 121528227 G A MTBP Missense_Mutation p.R681H 0.39 deleterious(0) probably_damaging(0.958) TCGA-XK-AAIW-01 8 123963874 123963874 G A ZHX2 Missense_Mutation p.V42M 0.43 tolerated(0.24) benign(0.002) TCGA-XK-AAIW-01 8 123966145 123966145 G A ZHX2 Missense_Mutation p.G799R 0.38 deleterious(0.01) probably_damaging(0.939) TCGA-XK-AAIW-01 8 124031544 124031544 C T DERL1 Missense_Mutation p.V170I 0.37 tolerated(0.43) benign(0.009) TCGA-XK-AAIW-01 8 124089435 124089435 C T TBC1D31 Silent p.G54G 0.39 TCGA-XK-AAIW-01 8 124383983 124383983 G A ATAD2 Missense_Mutation p.R155C 0.32 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 8 124547022 124547022 T G FBXO32 Missense_Mutation p.N50T 0.44 tolerated(0.09) benign(0.366) TCGA-XK-AAIW-01 8 124799552 124799552 G A FAM91A1 Missense_Mutation p.R377H 0.29 deleterious(0.02) benign(0.427) TCGA-XK-AAIW-01 8 125562218 125562218 G A NDUFB9 3'UTR 0.27 TCGA-XK-AAIW-01 8 12594257 12594257 T C LONRF1 Silent p.P468P 0.42 TCGA-XK-AAIW-01 8 125988686 125988686 G T ZNF572 Missense_Mutation p.R59I 0.38 tolerated(0.19) benign(0.002) TCGA-XK-AAIW-01 8 125988871 125988871 G A ZNF572 Missense_Mutation p.V121I 0.50 tolerated(0.77) benign(0.001) TCGA-XK-AAIW-01 8 126049557 126049557 G A KIAA0196 Missense_Mutation p.R1035C 0.33 tolerated(0.07) possibly_damaging(0.806) TCGA-XK-AAIW-01 8 126163439 126163439 G A NSMCE2 Missense_Mutation p.D62N 0.35 deleterious(0.04) benign(0.367) TCGA-XK-AAIW-01 8 128428616 128428616 C A POU5F1B Missense_Mutation p.L169I 0.29 tolerated(0.12) probably_damaging(0.978) TCGA-XK-AAIW-01 8 12950183 12950183 G A DLC1 Silent p.A1226A 0.28 TCGA-XK-AAIW-01 8 12957581 12957581 C T DLC1 Silent p.T755T 0.21 TCGA-XK-AAIW-01 8 131092213 131092213 G A ASAP1 Silent p.N859N 0.38 TCGA-XK-AAIW-01 8 131136321 131136321 A G ASAP1 Silent p.F515F 0.30 TCGA-XK-AAIW-01 8 131140295 131140295 G A ASAP1 Missense_Mutation p.T420I 0.45 deleterious(0) benign(0.072) TCGA-XK-AAIW-01 8 131916040 131916040 T C ADCY8 Missense_Mutation p.D630G 0.28 tolerated(0.71) benign(0.281) TCGA-XK-AAIW-01 8 132051856 132051856 G T ADCY8 Missense_Mutation p.L242M 0.22 tolerated(0.06) probably_damaging(0.99) TCGA-XK-AAIW-01 8 132962330 132962330 C T EFR3A Nonsense_Mutation p.R161* 0.21 TCGA-XK-AAIW-01 8 132991264 132991264 C T EFR3A Silent p.I499I 0.38 TCGA-XK-AAIW-01 8 133150184 133150184 A G KCNQ3 Missense_Mutation p.Y550H 0.42 deleterious(0) probably_damaging(0.977) TCGA-XK-AAIW-01 8 13356887 13356887 C T DLC1 Missense_Mutation p.A232T 0.35 tolerated_low_confidence(0.16) benign(0.025) TCGA-XK-AAIW-01 8 133771138 133771138 G A TMEM71 5'UTR 0.34 TCGA-XK-AAIW-01 8 133920513 133920513 C T TG Silent p.Y1310Y 0.36 TCGA-XK-AAIW-01 8 134203379 134203379 C T WISP1 5'UTR 0.57 TCGA-XK-AAIW-01 8 134276793 134276793 T C NDRG1 Missense_Mutation p.N68D 0.33 tolerated(0.06) probably_damaging(1) TCGA-XK-AAIW-01 8 134292492 134292492 G A NDRG1 Nonsense_Mutation p.Q28* 0.15 TCGA-XK-AAIW-01 8 135521921 135521921 C T ZFAT Missense_Mutation p.A1145T 0.33 tolerated_low_confidence(0.06) benign(0.005) TCGA-XK-AAIW-01 8 135524784 135524784 C A ZFAT Nonsense_Mutation p.E1099* 0.43 TCGA-XK-AAIW-01 8 139323133 139323133 C T FAM135B Silent p.V36V 0.35 TCGA-XK-AAIW-01 8 139611048 139611048 G T COL22A1 Missense_Mutation p.L1427M 0.38 unknown(0) TCGA-XK-AAIW-01 8 139820036 139820036 C T COL22A1 Missense_Mutation p.G490D 0.25 unknown(0) TCGA-XK-AAIW-01 8 141461101 141461101 G A TRAPPC9 Silent p.I222I 0.39 TCGA-XK-AAIW-01 8 141754812 141754812 G A PTK2 Silent p.L525L 0.39 TCGA-XK-AAIW-01 8 141856769 141856769 G A PTK2 Silent p.S153S 0.23 TCGA-XK-AAIW-01 8 142231719 142231719 G A SLC45A4 Silent p.G78G 0.43 TCGA-XK-AAIW-01 8 142367678 142367678 C T GPR20 Missense_Mutation p.A116T 0.49 tolerated(0.45) benign(0.044) TCGA-XK-AAIW-01 8 142486189 142486189 G T MROH5 Intron 0.45 TCGA-XK-AAIW-01 8 143618432 143618432 G A BAI1 Missense_Mutation p.A1219T 0.54 tolerated(0.17) benign(0.141) TCGA-XK-AAIW-01 8 143866833 143866833 G A LY6D Missense_Mutation p.A64V 0.27 tolerated(1) benign(0.005) TCGA-XK-AAIW-01 8 144620919 144620919 G A ZC3H3 Silent p.G206G 0.22 TCGA-XK-AAIW-01 8 144654782 144654782 G A MROH6 Missense_Mutation p.P35S 0.40 tolerated_low_confidence(0.22) benign(0.009) TCGA-XK-AAIW-01 8 144659250 144659250 G A NAPRT1 Silent p.S222S 0.50 TCGA-XK-AAIW-01 8 144672148 144672148 G A EEF1D Missense_Mutation p.A35V 0.21 deleterious(0.02) probably_damaging(0.948) TCGA-XK-AAIW-01 8 144687917 144687917 C T PYCRL Missense_Mutation p.A272T 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 8 144695126 144695126 T C TSTA3 Missense_Mutation p.E307G 0.19 deleterious(0.03) benign(0.266) TCGA-XK-AAIW-01 8 144695693 144695693 C T TSTA3 Splice_Site p.X270_splice 0.18 TCGA-XK-AAIW-01 8 144776245 144776245 C T ZNF707 Missense_Mutation p.R221C 0.38 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 8 144808312 144808312 G A FAM83H Missense_Mutation p.R1107C 0.54 deleterious(0) probably_damaging(0.964) TCGA-XK-AAIW-01 8 144895096 144895096 G A SCRIB Silent p.D226D 0.29 TCGA-XK-AAIW-01 8 144940342 144940342 G A EPPK1 Silent p.D2360D 0.06 TCGA-XK-AAIW-01 8 144940801 144940801 C T EPPK1 Silent p.T2207T 0.11 TCGA-XK-AAIW-01 8 144945928 144945928 G A EPPK1 Silent p.V498V 0.34 TCGA-XK-AAIW-01 8 144946563 144946563 C T EPPK1 Missense_Mutation p.V287M 0.22 benign(0.146) TCGA-XK-AAIW-01 8 144946589 144946589 C T EPPK1 Missense_Mutation p.R278Q 0.48 benign(0.011) TCGA-XK-AAIW-01 8 144946858 144946858 C T EPPK1 Silent p.L188L 0.29 TCGA-XK-AAIW-01 8 144990902 144990902 G A PLEC Missense_Mutation p.R4500C 0.29 probably_damaging(0.999) TCGA-XK-AAIW-01 8 145011407 145011407 G A PLEC Missense_Mutation p.R227W 0.36 unknown(0) TCGA-XK-AAIW-01 8 145051962 145051962 C T PARP10 Missense_Mutation p.R923H 0.38 tolerated(0.06) benign(0.295) TCGA-XK-AAIW-01 8 145058757 145058757 G A PARP10 Silent p.D471D 0.34 TCGA-XK-AAIW-01 8 145106948 145106948 G A OPLAH Missense_Mutation p.R1165W 0.29 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 8 145107481 145107481 G A OPLAH Silent p.R1058R 0.42 TCGA-XK-AAIW-01 8 145535865 145535865 C A HSF1 Silent p.G359G 0.33 TCGA-XK-AAIW-01 8 145616626 145616626 G A ADCK5 Silent p.R250R 0.28 TCGA-XK-AAIW-01 8 145622732 145622732 G A CPSF1 Silent p.C785C 0.35 TCGA-XK-AAIW-01 8 145626898 145626898 C T CPSF1 Missense_Mutation p.V78I 0.33 tolerated(0.82) benign(0.01) TCGA-XK-AAIW-01 8 145651576 145651576 G A VPS28 Missense_Mutation p.P18L 0.75 deleterious(0.03) possibly_damaging(0.884) TCGA-XK-AAIW-01 8 145659037 145659037 G A TONSL Nonsense_Mutation p.Q1165* 0.11 TCGA-XK-AAIW-01 8 145661958 145661958 G A TONSL Missense_Mutation p.A666V 0.34 tolerated(0.25) benign(0.004) TCGA-XK-AAIW-01 8 145667732 145667732 G A TONSL Silent p.R214R 0.45 TCGA-XK-AAIW-01 8 145729669 145729669 G A GPT 5'UTR 0.33 TCGA-XK-AAIW-01 8 145737881 145737881 G A RECQL4 Silent p.S983S 0.29 TCGA-XK-AAIW-01 8 145947855 145947855 C T ZNF251 Missense_Mutation p.R397Q 0.33 deleterious(0.04) possibly_damaging(0.602) TCGA-XK-AAIW-01 8 145998963 145998963 G A ZNF34 Silent p.S457S 0.20 TCGA-XK-AAIW-01 8 146107193 146107193 G A ZNF250 Missense_Mutation p.R464W 0.46 tolerated(0.21) probably_damaging(0.928) TCGA-XK-AAIW-01 8 146157095 146157095 G A ZNF16 Nonsense_Mutation p.R360* 0.44 TCGA-XK-AAIW-01 8 1496891 1496891 C T DLGAP2 Missense_Mutation p.P11L 0.48 tolerated(0.41) benign(0.003) TCGA-XK-AAIW-01 8 17055160 17055160 A G ZDHHC2 Missense_Mutation p.K148R 0.35 tolerated(0.54) benign(0.416) TCGA-XK-AAIW-01 8 17418039 17418039 C A SLC7A2 Missense_Mutation p.L541I 0.14 tolerated(0.51) benign(0.013) TCGA-XK-AAIW-01 8 17797628 17797628 G A PCM1 Intron 0.60 TCGA-XK-AAIW-01 8 1857628 1857628 C T ARHGEF10 Missense_Mutation p.A712V 0.39 tolerated(0.27) benign(0.013) TCGA-XK-AAIW-01 8 19315279 19315279 G A CSGALNACT1 Intron 0.32 TCGA-XK-AAIW-01 8 20036993 20036993 G A SLC18A1 Missense_Mutation p.P43S 0.38 deleterious(0) probably_damaging(0.931) TCGA-XK-AAIW-01 8 2021562 2021562 G A MYOM2 Missense_Mutation p.A368T 0.43 tolerated(0.09) probably_damaging(0.947) TCGA-XK-AAIW-01 8 2026842 2026842 G A MYOM2 Silent p.V430V 0.33 TCGA-XK-AAIW-01 8 2048706 2048706 G A MYOM2 Silent p.T827T 0.39 TCGA-XK-AAIW-01 8 2057240 2057240 G A MYOM2 Missense_Mutation p.R1033H 0.53 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 8 21860776 21860776 A G XPO7 Missense_Mutation p.N997S 0.22 tolerated(0.12) benign(0.318) TCGA-XK-AAIW-01 8 21924646 21924646 G A DMTN Silent p.V23V 0.31 TCGA-XK-AAIW-01 8 21960311 21960311 C T FAM160B2 Missense_Mutation p.H701Y 0.28 deleterious(0.03) probably_damaging(0.997) TCGA-XK-AAIW-01 8 21976476 21976476 C T HR Missense_Mutation p.R1067H 0.10 deleterious(0.01) probably_damaging(0.971) TCGA-XK-AAIW-01 8 21978589 21978589 C T HR Missense_Mutation p.A786T 0.27 tolerated(0.15) possibly_damaging(0.899) TCGA-XK-AAIW-01 8 21979159 21979159 C T HR Missense_Mutation p.G724S 0.40 deleterious(0.03) possibly_damaging(0.721) TCGA-XK-AAIW-01 8 21996508 21996508 C T REEP4 Missense_Mutation p.A162T 0.57 tolerated(0.44) benign(0.001) TCGA-XK-AAIW-01 8 22052051 22052051 G A BMP1 Missense_Mutation p.R464Q 0.28 tolerated(0.07) benign(0.193) TCGA-XK-AAIW-01 8 22053008 22053008 G A BMP1 Missense_Mutation p.G558D 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-XK-AAIW-01 8 22079190 22079190 C T PHYHIP Silent p.A223A 0.33 TCGA-XK-AAIW-01 8 22211821 22211821 G A PIWIL2 Missense_Mutation p.G899S 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 8 22355515 22355515 G A PPP3CC Missense_Mutation p.C125Y 0.37 deleterious(0) possibly_damaging(0.799) TCGA-XK-AAIW-01 8 22398279 22398279 G A PPP3CC Silent p.A510A 0.44 TCGA-XK-AAIW-01 8 22458719 22458719 G A C8orf58 Missense_Mutation p.R122H 0.43 tolerated(0.4) benign(0.003) TCGA-XK-AAIW-01 8 22465543 22465543 C T CCAR2 Silent p.A183A 0.34 TCGA-XK-AAIW-01 8 22472943 22472943 G A CCAR2 Missense_Mutation p.R404H 0.29 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 8 22481548 22481548 C T BIN3 Silent p.L165L 0.45 TCGA-XK-AAIW-01 8 22584731 22584731 G A PEBP4 Silent p.G120G 0.58 TCGA-XK-AAIW-01 8 22862091 22862091 G A RHOBTB2 Silent p.T70T 0.30 TCGA-XK-AAIW-01 8 22872264 22872264 C T RHOBTB2 Silent p.D633D 0.47 TCGA-XK-AAIW-01 8 22974492 22974492 G A TNFRSF10C Missense_Mutation p.C243Y 0.30 deleterious_low_confidence(0) unknown(0) TCGA-XK-AAIW-01 8 23177435 23177435 C T LOXL2 Missense_Mutation p.R478H 0.40 deleterious(0) probably_damaging(0.994) TCGA-XK-AAIW-01 8 23225613 23225613 G A LOXL2 Silent p.C84C 0.35 TCGA-XK-AAIW-01 8 23297339 23297339 C T ENTPD4 Silent p.T324T 0.44 TCGA-XK-AAIW-01 8 23423701 23423701 C T SLC25A37 Silent p.T97T 0.41 TCGA-XK-AAIW-01 8 23423843 23423843 G A SLC25A37 Missense_Mutation p.A145T 0.21 deleterious(0.04) possibly_damaging(0.733) TCGA-XK-AAIW-01 8 23429210 23429210 C T SLC25A37 Missense_Mutation p.R287W 0.36 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 8 24208809 24208809 G A ADAM28 Missense_Mutation p.V722I 0.39 tolerated(0.15) benign(0.004) TCGA-XK-AAIW-01 8 24350743 24350743 G A ADAM7 Splice_Site p.X614_splice 0.32 TCGA-XK-AAIW-01 8 25216578 25216578 G A DOCK5 Splice_Site p.X983_splice 0.15 TCGA-XK-AAIW-01 8 25220641 25220641 A G DOCK5 Missense_Mutation p.N1010D 0.30 tolerated(0.1) possibly_damaging(0.735) TCGA-XK-AAIW-01 8 25365068 25365068 C T CDCA2 Silent p.G962G 0.39 TCGA-XK-AAIW-01 8 25716010 25716010 G A EBF2 Silent p.R451R 0.50 TCGA-XK-AAIW-01 8 26481823 26481823 G A DPYSL2 Missense_Mutation p.G160R 0.33 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 8 27319108 27319108 G A CHRNA2 3'UTR 0.50 TCGA-XK-AAIW-01 8 27321197 27321197 C T CHRNA2 Missense_Mutation p.V255I 0.37 tolerated(1) benign(0.054) TCGA-XK-AAIW-01 8 27633930 27633930 T C ESCO2 Silent p.C35C 0.40 TCGA-XK-AAIW-01 8 27678146 27678146 G A PBK Silent p.G177G 0.33 TCGA-XK-AAIW-01 8 27886836 27886836 C T NUGGC Missense_Mutation p.G701S 0.24 deleterious(0.01) possibly_damaging(0.736) TCGA-XK-AAIW-01 8 28017844 28017844 A G ELP3 Silent p.R452R 0.47 TCGA-XK-AAIW-01 8 28017893 28017893 G A ELP3 Missense_Mutation p.V469I 0.42 tolerated(0.07) benign(0.127) TCGA-XK-AAIW-01 8 28218608 28218608 G A ZNF395 Missense_Mutation p.R12W 0.32 deleterious(0) unknown(0) TCGA-XK-AAIW-01 8 2830794 2830794 G A CSMD1 Missense_Mutation p.P2923L 0.39 possibly_damaging(0.841) TCGA-XK-AAIW-01 8 28573869 28573869 C T EXTL3 Missense_Mutation p.A98V 0.27 deleterious(0.03) possibly_damaging(0.76) TCGA-XK-AAIW-01 8 28575164 28575164 G A EXTL3 Missense_Mutation p.V530M 0.41 tolerated(0.05) benign(0.014) TCGA-XK-AAIW-01 8 28967440 28967440 G A KIF13B Missense_Mutation p.R1360C 0.38 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 8 28974382 28974382 C T KIF13B Missense_Mutation p.R1268H 0.45 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 8 28974497 28974497 C T KIF13B Missense_Mutation p.A1230T 0.18 tolerated(0.49) benign(0.014) TCGA-XK-AAIW-01 8 29013241 29013241 A G KIF13B Splice_Site p.X512_splice 0.38 TCGA-XK-AAIW-01 8 29102917 29102917 G A KIF13B Missense_Mutation p.A32V 0.40 deleterious(0.03) benign(0.003) TCGA-XK-AAIW-01 8 29923592 29923592 C T TMEM66 Silent p.T302T 0.35 TCGA-XK-AAIW-01 8 29963500 29963500 C T LEPROTL1 Intron 0.41 TCGA-XK-AAIW-01 8 30209642 30209642 G T TUBBP1 RNA 0.32 TCGA-XK-AAIW-01 8 30209889 30209889 G T TUBBP1 RNA 0.48 TCGA-XK-AAIW-01 8 30416412 30416412 G A RBPMS Nonsense_Mutation p.W179* 0.42 TCGA-XK-AAIW-01 8 30553908 30553908 G A GSR Missense_Mutation p.R262W 0.46 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 8 30703093 30703093 C T TEX15 Silent p.Q1147Q 0.40 TCGA-XK-AAIW-01 8 30704683 30704683 G A TEX15 Silent p.D617D 0.21 TCGA-XK-AAIW-01 8 30958414 30958414 G A WRN Silent p.G677G 0.26 TCGA-XK-AAIW-01 8 32505513 32505513 G A NRG1 Intron 0.38 TCGA-XK-AAIW-01 8 35541090 35541090 C T UNC5D Missense_Mutation p.P199L 0.21 tolerated(0.74) benign(0.006) TCGA-XK-AAIW-01 8 36675211 36675211 G A KCNU1 Missense_Mutation p.A347T 0.26 tolerated(0.72) possibly_damaging(0.708) TCGA-XK-AAIW-01 8 36698503 36698503 T C KCNU1 Missense_Mutation p.L562P 0.35 tolerated(0.29) benign(0.445) TCGA-XK-AAIW-01 8 36768621 36768621 G A KCNU1 Silent p.P835P 0.33 TCGA-XK-AAIW-01 8 37691600 37691600 G A GPR124 Missense_Mutation p.R521H 0.45 tolerated(0.07) possibly_damaging(0.587) TCGA-XK-AAIW-01 8 37698931 37698931 G A GPR124 Silent p.T1025T 0.21 TCGA-XK-AAIW-01 8 37702215 37702215 C T BRF2 Silent p.P351P 0.14 TCGA-XK-AAIW-01 8 37704638 37704638 C A BRF2 Missense_Mutation p.E90D 0.32 deleterious(0.01) possibly_damaging(0.829) TCGA-XK-AAIW-01 8 37794824 37794824 C T GOT1L1 Missense_Mutation p.D164N 0.25 tolerated(0.11) benign(0.186) TCGA-XK-AAIW-01 8 38066622 38066622 C T BAG4 Missense_Mutation p.A242V 0.21 tolerated(0.19) benign(0.008) TCGA-XK-AAIW-01 8 38677710 38677710 A G TACC1 Silent p.S316S 0.44 TCGA-XK-AAIW-01 8 38874762 38874762 G A ADAM9 Silent p.A145A 0.07 TCGA-XK-AAIW-01 8 39525700 39525700 A G ADAM18 Missense_Mutation p.K504E 0.34 tolerated(1) benign(0.007) TCGA-XK-AAIW-01 8 41548012 41548012 G A ANK1 Missense_Mutation p.R1363C 0.11 deleterious(0.01) benign(0.019) TCGA-XK-AAIW-01 8 41580698 41580698 A G ANK1 Missense_Mutation p.V318A 0.39 tolerated(0.55) possibly_damaging(0.492) TCGA-XK-AAIW-01 8 41583417 41583417 G A ANK1 Silent p.N191N 0.29 TCGA-XK-AAIW-01 8 41790016 41790016 C T KAT6A Missense_Mutation p.A1908T 0.38 unknown(0) TCGA-XK-AAIW-01 8 41795087 41795087 C A KAT6A Splice_Site p.X1014_splice 0.38 TCGA-XK-AAIW-01 8 41801448 41801448 C T KAT6A Silent p.P682P 0.32 TCGA-XK-AAIW-01 8 41905902 41905902 C A KAT6A Missense_Mutation p.K198N 0.45 possibly_damaging(0.87) TCGA-XK-AAIW-01 8 42038144 42038144 C T PLAT Missense_Mutation p.A317T 0.40 tolerated(0.91) benign(0.03) TCGA-XK-AAIW-01 8 42040326 42040326 C T PLAT Silent p.P238P 0.39 TCGA-XK-AAIW-01 8 42611543 42611543 C T CHRNA6 Missense_Mutation p.D267N 0.30 tolerated(0.08) possibly_damaging(0.885) TCGA-XK-AAIW-01 8 42611574 42611574 A - CHRNA6 Frame_Shift_Del p.L257* 0.31 TCGA-XK-AAIW-01 8 42614217 42614217 G A CHRNA6 Missense_Mutation p.R87C 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-XK-AAIW-01 8 48614416 48614416 A G SPIDR Missense_Mutation p.D636G 0.46 deleterious(0.01) possibly_damaging(0.461) TCGA-XK-AAIW-01 8 48761940 48761940 C A PRKDC Missense_Mutation p.R2376M 0.36 probably_damaging(0.985) TCGA-XK-AAIW-01 8 48798701 48798701 C T PRKDC Missense_Mutation p.R1526H 0.38 benign(0.002) TCGA-XK-AAIW-01 8 53084572 53084572 G A ST18 Silent p.S283S 0.37 TCGA-XK-AAIW-01 8 54147579 54147579 G A OPRK1 Missense_Mutation p.T117M 0.32 tolerated(0.11) probably_damaging(0.942) TCGA-XK-AAIW-01 8 56270427 56270427 G T XKR4 Missense_Mutation p.Q332H 0.45 tolerated(0.12) benign(0.06) TCGA-XK-AAIW-01 8 56863270 56863270 C T LYN Silent p.D138D 0.41 TCGA-XK-AAIW-01 8 57130029 57130029 G T CHCHD7 3'UTR 0.62 TCGA-XK-AAIW-01 8 59404030 59404030 G A CYP7A1 3'UTR 0.37 TCGA-XK-AAIW-01 8 59544078 59544078 C T NSMAF Missense_Mutation p.V152I 0.33 tolerated(0.8) benign(0.016) TCGA-XK-AAIW-01 8 61178597 61178597 C A CA8 Nonsense_Mutation p.G102* 0.25 TCGA-XK-AAIW-01 8 62412134 62412134 G A CLVS1 3'UTR 0.47 TCGA-XK-AAIW-01 8 62430187 62430187 C T ASPH Missense_Mutation p.V676M 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 8 63492147 63492147 C T NKAIN3 Missense_Mutation p.A35V 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-XK-AAIW-01 8 642503 642503 G A ERICH1 Silent p.N93N 0.34 TCGA-XK-AAIW-01 8 6605240 6605240 C T AGPAT5 Silent p.H212H 0.33 TCGA-XK-AAIW-01 8 67759502 67759502 A G SGK3 Silent p.G383G 0.41 TCGA-XK-AAIW-01 8 67796214 67796214 C T MCMDC2 Missense_Mutation p.T353I 0.32 deleterious(0) benign(0.023) TCGA-XK-AAIW-01 8 67803125 67803125 G A MCMDC2 Missense_Mutation p.V367I 0.18 tolerated(0.22) benign(0.034) TCGA-XK-AAIW-01 8 6794283 6794283 C T DEFA4 Missense_Mutation p.A47T 0.22 tolerated(0.29) benign(0.428) TCGA-XK-AAIW-01 8 68074057 68074057 G A CSPP1 Silent p.Q845Q 0.09 TCGA-XK-AAIW-01 8 68107673 68107673 G A CSPP1 Missense_Mutation p.G1171R 0.40 tolerated(0.13) benign(0.201) TCGA-XK-AAIW-01 8 70476261 70476261 G A SULF1 Silent p.L17L 0.21 TCGA-XK-AAIW-01 8 70674044 70674044 C T SLCO5A1 Missense_Mutation p.G325D 0.13 deleterious(0.01) possibly_damaging(0.589) TCGA-XK-AAIW-01 8 71053445 71053445 G A NCOA2 Missense_Mutation p.T1001M 0.50 tolerated(1) benign(0) TCGA-XK-AAIW-01 8 71068946 71068946 A G NCOA2 Silent p.L552L 0.10 TCGA-XK-AAIW-01 8 71069250 71069250 C T NCOA2 Silent p.V450V 0.38 TCGA-XK-AAIW-01 8 72964955 72964955 C T TRPA1 Missense_Mutation p.V564I 0.46 deleterious(0.01) benign(0.159) TCGA-XK-AAIW-01 8 74600977 74600977 C A STAU2 Missense_Mutation p.Q62H 0.40 deleterious(0.02) benign(0.186) TCGA-XK-AAIW-01 8 74903637 74903637 T C LY96 5'UTR 0.44 TCGA-XK-AAIW-01 8 77618377 77618377 G T ZFHX4 Missense_Mutation p.R685M 0.37 possibly_damaging(0.702) TCGA-XK-AAIW-01 8 79652263 79652264 - A IL7 Frame_Shift_Ins p.K68* 0.17 TCGA-XK-AAIW-01 8 8175899 8175899 C T SGK223 Missense_Mutation p.R1329Q 0.33 probably_damaging(0.968) TCGA-XK-AAIW-01 8 8175954 8175954 G A SGK223 Missense_Mutation p.R1311C 0.51 probably_damaging(0.998) TCGA-XK-AAIW-01 8 82571663 82571663 C T IMPA1 Missense_Mutation p.A312T 0.38 tolerated(0.08) probably_damaging(0.942) TCGA-XK-AAIW-01 8 85799885 85799885 G T RALYL Missense_Mutation p.E257D 0.41 tolerated(0.36) benign(0.01) TCGA-XK-AAIW-01 8 86037065 86037065 T C LRRCC1 Missense_Mutation p.L388S 0.32 tolerated(0.29) benign(0.016) TCGA-XK-AAIW-01 8 86178874 86178874 G A CA13 Missense_Mutation p.S131N 0.21 tolerated(0.46) benign(0.019) TCGA-XK-AAIW-01 8 87242323 87242323 T C SLC7A13 Missense_Mutation p.T62A 0.22 deleterious(0.01) benign(0.102) TCGA-XK-AAIW-01 8 87447713 87447713 G A WWP1 Missense_Mutation p.R545H 0.30 deleterious(0.02) benign(0.003) TCGA-XK-AAIW-01 8 8747722 8747722 T C MFHAS1 Silent p.L949L 0.16 TCGA-XK-AAIW-01 8 8747729 8747729 G A MFHAS1 Missense_Mutation p.A947V 0.40 deleterious(0.01) benign(0.439) TCGA-XK-AAIW-01 8 87570575 87570575 C T CPNE3 Silent p.G517G 0.44 TCGA-XK-AAIW-01 8 88885836 88885836 C T DCAF4L2 Missense_Mutation p.V122I 0.45 tolerated(0.1) benign(0.017) TCGA-XK-AAIW-01 8 90970998 90970998 G A NBN Missense_Mutation p.T360I 0.40 tolerated(0.46) benign(0.003) TCGA-XK-AAIW-01 8 90993094 90993094 G A NBN Silent p.C116C 0.47 TCGA-XK-AAIW-01 8 92033484 92033484 C T TMEM55A Silent p.T85T 0.27 TCGA-XK-AAIW-01 8 92401619 92401619 A G SLC26A7 Missense_Mutation p.S577G 0.13 deleterious(0.03) benign(0.005) TCGA-XK-AAIW-01 8 92406527 92406527 G A SLC26A7 3'UTR 0.46 TCGA-XK-AAIW-01 8 92998436 92998436 C T RUNX1T1 Missense_Mutation p.A410T 0.40 tolerated(0.21) benign(0.021) TCGA-XK-AAIW-01 8 93017219 93017219 A G RUNX1T1 Intron 0.33 TCGA-XK-AAIW-01 8 93017486 93017486 C T RUNX1T1 Missense_Mutation p.A211T 0.41 deleterious(0) probably_damaging(0.969) TCGA-XK-AAIW-01 8 93026864 93026864 G A RUNX1T1 Silent p.G148G 0.12 TCGA-XK-AAIW-01 8 9413926 9413926 T C TNKS Silent p.V159V 0.35 TCGA-XK-AAIW-01 8 94748478 94748478 C A RBM12B Missense_Mutation p.R54I 0.36 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 8 94811976 94811976 G A TMEM67 Missense_Mutation p.G744E 0.35 tolerated(0.08) probably_damaging(0.971) TCGA-XK-AAIW-01 8 95522015 95522015 G A KIAA1429 Silent p.F1260F 0.42 TCGA-XK-AAIW-01 8 95539163 95539163 G A KIAA1429 Nonsense_Mutation p.Q437* 0.34 TCGA-XK-AAIW-01 8 95839603 95839603 G A INTS8 Missense_Mutation p.A140T 0.36 tolerated(0.3) benign(0.006) TCGA-XK-AAIW-01 8 95869126 95869126 C T INTS8 Missense_Mutation p.A625V 0.49 tolerated(0.5) benign(0.407) TCGA-XK-AAIW-01 8 9588532 9588532 G A TNKS Missense_Mutation p.A712T 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-XK-AAIW-01 8 96047721 96047721 C T NDUFAF6 Nonsense_Mutation p.R113* 0.33 TCGA-XK-AAIW-01 8 96059229 96059229 G T NDUFAF6 Missense_Mutation p.K196N 0.38 deleterious(0.02) benign(0.292) TCGA-XK-AAIW-01 8 97156824 97156824 C T GDF6 Silent p.E445E 0.50 TCGA-XK-AAIW-01 8 97312002 97312002 C T PTDSS1 Silent p.G227G 0.12 TCGA-XK-AAIW-01 8 99170536 99170536 G A POP1 3'UTR 0.56 TCGA-XK-AAIW-01 8 99440488 99440488 C T KCNS2 Missense_Mutation p.A94V 0.41 deleterious(0) benign(0.071) TCGA-XK-AAIW-01 8 99961116 99961116 G A OSR2 5'UTR 0.40 TCGA-XK-AAIW-01 8 99961724 99961724 A G OSR2 Missense_Mutation p.T182A 0.42 deleterious(0.01) probably_damaging(0.966) TCGA-XK-AAIW-01 9 100126320 100126320 C A CCDC180 Intron 0.37 TCGA-XK-AAIW-01 9 100137804 100137804 C T CCDC180 Missense_Mutation p.S1636L 0.34 deleterious(0) possibly_damaging(0.519) TCGA-XK-AAIW-01 9 100235780 100235780 G A TDRD7 Missense_Mutation p.A651T 0.30 tolerated(0.23) possibly_damaging(0.754) TCGA-XK-AAIW-01 9 100693372 100693372 G A HEMGN Missense_Mutation p.A102V 0.42 tolerated(0.55) benign(0) TCGA-XK-AAIW-01 9 100823218 100823218 G T NANS Missense_Mutation p.R96M 0.35 tolerated(0.11) possibly_damaging(0.792) TCGA-XK-AAIW-01 9 101006409 101006409 G A TBC1D2 Nonsense_Mutation p.Q172* 0.52 TCGA-XK-AAIW-01 9 101533322 101533322 C T ANKS6 Missense_Mutation p.V610I 0.17 tolerated(0.71) benign(0.001) TCGA-XK-AAIW-01 9 101540677 101540677 G A ANKS6 Silent p.F466F 0.45 TCGA-XK-AAIW-01 9 101597550 101597550 G T GALNT12 Missense_Mutation p.G313W 0.33 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 101778332 101778332 C T COL15A1 Silent p.S526S 0.25 TCGA-XK-AAIW-01 9 102590329 102590329 C T NR4A3 Missense_Mutation p.P13L 0.35 deleterious(0) probably_damaging(0.983) TCGA-XK-AAIW-01 9 102626117 102626117 G A NR4A3 Missense_Mutation p.D628N 0.43 deleterious(0) possibly_damaging(0.464) TCGA-XK-AAIW-01 9 104238426 104238426 G A TMEM246 Missense_Mutation p.R317W 0.26 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 9 104312963 104312963 G A RNF20 Missense_Mutation p.V390I 0.37 tolerated(0.1) benign(0.103) TCGA-XK-AAIW-01 9 104314442 104314442 G A RNF20 Missense_Mutation p.M476I 0.48 deleterious(0) benign(0.019) TCGA-XK-AAIW-01 9 104323384 104323384 G A RNF20 Missense_Mutation p.A841T 0.40 tolerated(0.06) benign(0.118) TCGA-XK-AAIW-01 9 104499708 104499708 C G GRIN3A Missense_Mutation p.C185S 0.12 deleterious(0) probably_damaging(0.997) TCGA-XK-AAIW-01 9 106901465 106901465 G A SMC2 Missense_Mutation p.V1155I 0.48 deleterious(0.02) probably_damaging(0.931) TCGA-XK-AAIW-01 9 107361258 107361258 G A OR13C5 Missense_Mutation p.A146V 0.50 tolerated(0.22) benign(0.006) TCGA-XK-AAIW-01 9 107457453 107457453 G A OR13D1 Missense_Mutation p.V251M 0.45 tolerated(0.32) possibly_damaging(0.517) TCGA-XK-AAIW-01 9 107589250 107589250 G A ABCA1 Silent p.G772G 0.26 TCGA-XK-AAIW-01 9 107589390 107589390 C T ABCA1 Missense_Mutation p.A726T 0.25 tolerated(0.41) benign(0.279) TCGA-XK-AAIW-01 9 109691436 109691436 C T ZNF462 Missense_Mutation p.P1748L 0.12 possibly_damaging(0.636) TCGA-XK-AAIW-01 9 111761528 111761528 C T CTNNAL1 Silent p.T50T 0.15 TCGA-XK-AAIW-01 9 113100054 113100054 G A TXNDC8 Missense_Mutation p.T8M 0.31 tolerated(0.34) benign(0.004) TCGA-XK-AAIW-01 9 113168745 113168745 G T SVEP1 Silent p.T3045T 0.33 TCGA-XK-AAIW-01 9 113192566 113192566 G A SVEP1 Missense_Mutation p.P1840S 0.30 probably_damaging(0.967) TCGA-XK-AAIW-01 9 113194840 113194840 A G SVEP1 Missense_Mutation p.V1712A 0.19 possibly_damaging(0.903) TCGA-XK-AAIW-01 9 113208265 113208265 C T SVEP1 Missense_Mutation p.V1439I 0.43 benign(0.248) TCGA-XK-AAIW-01 9 114359602 114359602 T - PTGR1 Frame_Shift_Del p.N34Mfs*17 0.33 TCGA-XK-AAIW-01 9 115024862 115024862 C T PTBP3 Silent p.L157L 0.43 TCGA-XK-AAIW-01 9 115166427 115166427 C A HSDL2 Missense_Mutation p.A57D 0.32 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 115336493 115336493 A G KIAA1958 Missense_Mutation p.T45A 0.43 deleterious(0.01) possibly_damaging(0.739) TCGA-XK-AAIW-01 9 115641931 115641931 G A SLC46A2 3'UTR 0.29 TCGA-XK-AAIW-01 9 115649642 115649642 G T SLC46A2 Missense_Mutation p.A394D 0.35 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 9 115760169 115760169 G A ZNF883 RNA 0.41 TCGA-XK-AAIW-01 9 115935780 115935780 C T FKBP15 Missense_Mutation p.A829T 0.41 tolerated(0.08) benign(0.04) TCGA-XK-AAIW-01 9 116045694 116045694 C T PRPF4 Nonsense_Mutation p.R197* 0.20 TCGA-XK-AAIW-01 9 116082637 116082637 C T WDR31 Silent p.T260T 0.37 TCGA-XK-AAIW-01 9 116346414 116346414 G A RGS3 Missense_Mutation p.G908R 0.39 tolerated(0.18) benign(0.023) TCGA-XK-AAIW-01 9 116358026 116358026 C T RGS3 Missense_Mutation p.A1131V 0.36 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 9 116835296 116835296 C T AMBP Silent p.P155P 0.47 TCGA-XK-AAIW-01 9 117072862 117072862 A G COL27A1 Missense_Mutation p.T1824A 0.48 unknown(0) TCGA-XK-AAIW-01 9 117092738 117092738 G A ORM2 Missense_Mutation p.A47T 0.18 deleterious(0) possibly_damaging(0.827) TCGA-XK-AAIW-01 9 117124 117124 C T FOXD4 Silent p.E332E 0.39 TCGA-XK-AAIW-01 9 117188502 117188502 C T DFNB31 Silent p.A385A 0.38 TCGA-XK-AAIW-01 9 117400890 117400890 G T C9orf91 Missense_Mutation p.A245S 0.34 tolerated(0.45) benign(0.049) TCGA-XK-AAIW-01 9 117692505 117692505 C T TNFSF8 Missense_Mutation p.V27M 0.50 deleterious(0.01) probably_damaging(0.961) TCGA-XK-AAIW-01 9 117810616 117810616 C T TNC Missense_Mutation p.G1592D 0.24 tolerated(0.08) probably_damaging(0.911) TCGA-XK-AAIW-01 9 117853141 117853141 C T TNC Missense_Mutation p.V53I 0.43 tolerated(0.05) benign(0.013) TCGA-XK-AAIW-01 9 118076 118076 C T FOXD4 Missense_Mutation p.R15H 0.40 tolerated(0.09) benign(0.031) TCGA-XK-AAIW-01 9 118950454 118950454 C A PAPPA Silent p.T479T 0.34 TCGA-XK-AAIW-01 9 119188348 119188348 G A ASTN2 Missense_Mutation p.R1217W 0.38 deleterious(0.01) unknown(0) TCGA-XK-AAIW-01 9 119203009 119203009 C T ASTN2 Missense_Mutation p.A1170T 0.33 deleterious(0) unknown(0) TCGA-XK-AAIW-01 9 120475801 120475801 C T TLR4 Silent p.G465G 0.28 TCGA-XK-AAIW-01 9 121930403 121930403 G A BRINP1 Silent p.C415C 0.32 TCGA-XK-AAIW-01 9 121971078 121971078 T - BRINP1 Frame_Shift_Del p.K355Rfs*75 0.18 TCGA-XK-AAIW-01 9 123210312 123210312 C T CDK5RAP2 Silent p.T962T 0.11 TCGA-XK-AAIW-01 9 123234070 123234070 C T CDK5RAP2 Missense_Mutation p.R605Q 0.50 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 9 123580192 123580192 C T PSMD5 Missense_Mutation p.A503T 0.36 deleterious(0) probably_damaging(0.995) TCGA-XK-AAIW-01 9 123624906 123624906 C T PHF19 Missense_Mutation p.A364T 0.47 tolerated(0.59) benign(0) TCGA-XK-AAIW-01 9 123725196 123725196 C T C5 Missense_Mutation p.G1458E 0.32 deleterious(0.02) benign(0.182) TCGA-XK-AAIW-01 9 123812539 123812539 G T C5 5'UTR 0.45 TCGA-XK-AAIW-01 9 123912636 123912636 A G CNTRL Missense_Mutation p.T1280A 0.37 benign(0.053) TCGA-XK-AAIW-01 9 124079467 124079467 G A GSN Missense_Mutation p.G337D 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 124094730 124094730 C T GSN Missense_Mutation p.T733M 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-XK-AAIW-01 9 124094780 124094780 G T GSN Missense_Mutation p.G750C 0.41 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 9 124521263 124521263 G A DAB2IP Silent p.V173V 0.83 TCGA-XK-AAIW-01 9 124545882 124545882 C T DAB2IP 3'UTR 0.37 TCGA-XK-AAIW-01 9 124751448 124751448 G A TTLL11 Intron 0.31 TCGA-XK-AAIW-01 9 125154676 125154676 C T PTGS1 Silent p.G551G 0.44 TCGA-XK-AAIW-01 9 125289100 125289100 G A OR1N1 Missense_Mutation p.T158M 0.44 deleterious(0) probably_damaging(0.932) TCGA-XK-AAIW-01 9 125512085 125512085 C A OR1L6 5'Flank 0.45 TCGA-XK-AAIW-01 9 125551311 125551311 A G OR5C1 Missense_Mutation p.T34A 0.42 tolerated(0.07) benign(0.014) TCGA-XK-AAIW-01 9 125621135 125621135 C T RC3H2 Missense_Mutation p.R699H 0.36 deleterious(0.03) probably_damaging(0.984) TCGA-XK-AAIW-01 9 125797091 125797091 C T GPR21 Silent p.C82C 0.44 TCGA-XK-AAIW-01 9 126136916 126136916 T C CRB2 Missense_Mutation p.C1150R 0.28 deleterious(0) possibly_damaging(0.761) TCGA-XK-AAIW-01 9 126144481 126144481 G A DENND1A Missense_Mutation p.P754S 0.41 tolerated_low_confidence(0.13) benign(0.011) TCGA-XK-AAIW-01 9 126212986 126212986 G A DENND1A Missense_Mutation p.R448C 0.14 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 127088703 127088703 G A NEK6 Missense_Mutation p.R201Q 0.38 deleterious(0.05) probably_damaging(0.988) TCGA-XK-AAIW-01 9 127113178 127113178 C T NEK6 Silent p.Y332Y 0.38 TCGA-XK-AAIW-01 9 127113240 127113240 G A NEK6 3'UTR 0.44 TCGA-XK-AAIW-01 9 127549365 127549365 C T OLFML2A Missense_Mutation p.R68W 0.43 deleterious(0) benign(0.332) TCGA-XK-AAIW-01 9 127561615 127561615 C T OLFML2A Missense_Mutation p.R172C 0.47 deleterious(0.04) possibly_damaging(0.641) TCGA-XK-AAIW-01 9 127572213 127572213 G A OLFML2A Missense_Mutation p.R494H 0.35 deleterious(0) possibly_damaging(0.812) TCGA-XK-AAIW-01 9 127637403 127637403 C T ARPC5L Silent p.S124S 0.36 TCGA-XK-AAIW-01 9 127733744 127733744 C T SCAI Missense_Mutation p.A550T 0.40 tolerated(0.09) benign(0.01) TCGA-XK-AAIW-01 9 127916001 127916001 C T PPP6C Silent p.L197L 0.33 TCGA-XK-AAIW-01 9 128230310 128230310 G A MAPKAP1 Missense_Mutation p.P429L 0.41 deleterious(0.01) probably_damaging(0.951) TCGA-XK-AAIW-01 9 129148856 129148856 G A MVB12B Missense_Mutation p.V110M 0.27 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 129455510 129455510 C T LMX1B Missense_Mutation p.R217W 0.50 deleterious(0) probably_damaging(0.931) TCGA-XK-AAIW-01 9 129458221 129458221 C T LMX1B Silent p.S341S 0.21 TCGA-XK-AAIW-01 9 129595902 129595902 C T ZBTB43 Silent p.L372L 0.39 TCGA-XK-AAIW-01 9 129870557 129870557 C T ANGPTL2 Missense_Mutation p.A152T 0.31 tolerated(0.12) possibly_damaging(0.484) TCGA-XK-AAIW-01 9 130111298 130111298 C T GARNL3 Silent p.G509G 0.23 TCGA-XK-AAIW-01 9 130167748 130167748 C A SLC2A8 Silent p.I400I 0.48 TCGA-XK-AAIW-01 9 130269199 130269199 C A FAM129B Missense_Mutation p.Q722H 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.724) TCGA-XK-AAIW-01 9 130286015 130286015 C A FAM129B Missense_Mutation p.A178S 0.24 tolerated(0.3) benign(0.023) TCGA-XK-AAIW-01 9 130438090 130438090 C T STXBP1 Missense_Mutation p.A373V 0.42 tolerated(0.08) possibly_damaging(0.874) TCGA-XK-AAIW-01 9 130471805 130471805 G A C9orf117 Missense_Mutation p.R89H 0.27 tolerated(0.08) probably_damaging(0.999) TCGA-XK-AAIW-01 9 130473655 130473655 C T C9orf117 Silent p.G245G 0.29 TCGA-XK-AAIW-01 9 130570836 130570836 G A FPGS Splice_Site p.X275_splice 0.24 TCGA-XK-AAIW-01 9 130578318 130578318 C A ENG Missense_Mutation p.G586C 0.36 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 9 130634180 130634180 G A AK1 Silent p.A82A 0.27 TCGA-XK-AAIW-01 9 130674860 130674860 C T ST6GALNAC4 Missense_Mutation p.V100M 0.48 probably_damaging(0.982) TCGA-XK-AAIW-01 9 130829094 130829094 G A NAIF1 Missense_Mutation p.P96L 0.10 tolerated(0.09) benign(0.005) TCGA-XK-AAIW-01 9 130854244 130854244 C - SLC25A25 Intron 0.32 TCGA-XK-AAIW-01 9 131008675 131008675 G T DNM1 Missense_Mutation p.E558D 0.26 deleterious(0.02) possibly_damaging(0.822) TCGA-XK-AAIW-01 9 131073259 131073259 C T TRUB2 Missense_Mutation p.A193T 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 131267153 131267153 C T GLE1 Silent p.C23C 0.37 TCGA-XK-AAIW-01 9 131388869 131388869 G A SPTAN1 Missense_Mutation p.R2160H 0.37 tolerated(0.08) benign(0.021) TCGA-XK-AAIW-01 9 131394422 131394422 T G SPTAN1 Missense_Mutation p.I2260S 0.35 deleterious(0) benign(0.001) TCGA-XK-AAIW-01 9 131476599 131476599 G A PKN3 Missense_Mutation p.R479Q 0.35 tolerated(0.64) benign(0.001) TCGA-XK-AAIW-01 9 131482247 131482247 C T PKN3 Missense_Mutation p.A776V 0.45 tolerated(1) benign(0.036) TCGA-XK-AAIW-01 9 131482744 131482744 G A PKN3 Silent p.A843A 0.39 TCGA-XK-AAIW-01 9 131505018 131505018 G A ZER1 Missense_Mutation p.R456W 0.36 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 131671496 131671496 C T LRRC8A Missense_Mutation p.R685C 0.16 tolerated(0.09) probably_damaging(0.998) TCGA-XK-AAIW-01 9 13168390 13168390 G A MPDZ Missense_Mutation p.H1077Y 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-XK-AAIW-01 9 131777084 131777084 C T SH3GLB2 Missense_Mutation p.R145H 0.33 deleterious(0.03) possibly_damaging(0.458) TCGA-XK-AAIW-01 9 131862813 131862813 G A CRAT Missense_Mutation p.R321C 0.41 deleterious(0.03) probably_damaging(0.943) TCGA-XK-AAIW-01 9 132400656 132400656 C A ASB6 Missense_Mutation p.G227W 0.26 deleterious(0.03) probably_damaging(0.992) TCGA-XK-AAIW-01 9 132591468 132591468 C T C9orf78 Intron 0.45 TCGA-XK-AAIW-01 9 132597498 132597498 C T C9orf78 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0.017) TCGA-XK-AAIW-01 9 132890973 132890973 C T GPR107 Missense_Mutation p.R547C 0.10 deleterious(0.02) possibly_damaging(0.55) TCGA-XK-AAIW-01 9 133512508 133512508 C A FUBP3 3'UTR 0.40 TCGA-XK-AAIW-01 9 133760700 133760700 C T ABL1 Missense_Mutation p.T1027I 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XK-AAIW-01 9 133911650 133911650 C T LAMC3 Missense_Mutation p.R303C 0.48 deleterious(0) benign(0.224) TCGA-XK-AAIW-01 9 133936475 133936475 C T LAMC3 Missense_Mutation p.P738S 0.30 tolerated(0.09) benign(0.119) TCGA-XK-AAIW-01 9 134004684 134004684 C A NUP214 Missense_Mutation p.P138T 0.18 unknown(0) TCGA-XK-AAIW-01 9 134004775 134004775 G A NUP214 Missense_Mutation p.C168Y 0.35 unknown(0) TCGA-XK-AAIW-01 9 134049546 134049546 C T NUP214 Missense_Mutation p.R1000W 0.26 possibly_damaging(0.632) TCGA-XK-AAIW-01 9 134136239 134136239 C T FAM78A Silent p.P274P 0.07 TCGA-XK-AAIW-01 9 134165620 134165620 G A PPAPDC3 Missense_Mutation p.G79D 0.19 deleterious(0.05) probably_damaging(0.998) TCGA-XK-AAIW-01 9 134350236 134350236 G A PRRC2B Missense_Mutation p.S907N 0.42 tolerated(0.44) benign(0.003) TCGA-XK-AAIW-01 9 134350749 134350749 G A PRRC2B Missense_Mutation p.G1078D 0.32 deleterious(0.01) probably_damaging(0.94) TCGA-XK-AAIW-01 9 134351102 134351102 C T PRRC2B Nonsense_Mutation p.R1196* 0.21 TCGA-XK-AAIW-01 9 134379578 134379578 C T POMT1 Intron 0.39 TCGA-XK-AAIW-01 9 134385176 134385176 G A POMT1 Missense_Mutation p.A196T 0.36 tolerated(0.28) possibly_damaging(0.826) TCGA-XK-AAIW-01 9 134398592 134398592 G T POMT1 3'UTR 0.55 TCGA-XK-AAIW-01 9 134459741 134459741 G A RAPGEF1 Missense_Mutation p.S956L 0.41 deleterious(0) probably_damaging(0.924) TCGA-XK-AAIW-01 9 135073364 135073364 C T NTNG2 Silent p.Y75Y 0.43 TCGA-XK-AAIW-01 9 135139756 135139756 G A SETX Missense_Mutation p.A2635V 0.44 tolerated_low_confidence(0.26) benign(0.011) TCGA-XK-AAIW-01 9 135161826 135161826 G T SETX Missense_Mutation p.A2127D 0.16 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 9 135176063 135176063 G A SETX Silent p.H1834H 0.45 TCGA-XK-AAIW-01 9 135204232 135204232 G A SETX Missense_Mutation p.T918I 0.36 deleterious_low_confidence(0.03) benign(0.14) TCGA-XK-AAIW-01 9 135204624 135204624 G T SETX Silent p.I787I 0.29 TCGA-XK-AAIW-01 9 135554266 135554266 C T GTF3C4 Silent p.G420G 0.12 TCGA-XK-AAIW-01 9 135702253 135702253 C T AK8 Missense_Mutation p.V249I 0.33 tolerated(0.09) probably_damaging(0.996) TCGA-XK-AAIW-01 9 135765256 135765256 G A C9orf9 Intron 0.44 TCGA-XK-AAIW-01 9 135863747 135863747 C T GFI1B Silent p.S134S 0.37 TCGA-XK-AAIW-01 9 135863817 135863817 C A GFI1B Missense_Mutation p.P158T 0.33 tolerated(0.07) benign(0.086) TCGA-XK-AAIW-01 9 136030608 136030608 G A GBGT1 Missense_Mutation p.P106S 0.28 tolerated(0.28) possibly_damaging(0.811) TCGA-XK-AAIW-01 9 136083896 136083896 C A OBP2B Missense_Mutation p.A56S 0.53 deleterious(0.05) possibly_damaging(0.775) TCGA-XK-AAIW-01 9 136198745 136198745 C T SURF6 Missense_Mutation p.R349H 0.27 deleterious(0) possibly_damaging(0.812) TCGA-XK-AAIW-01 9 136200595 136200595 G A SURF6 Nonsense_Mutation p.R118* 0.62 TCGA-XK-AAIW-01 9 136216453 136216453 C T RPL7A Missense_Mutation p.P58S 0.19 deleterious(0.02) possibly_damaging(0.753) TCGA-XK-AAIW-01 9 136259426 136259426 C T C9orf96 Missense_Mutation p.R198C 0.36 deleterious(0.02) benign(0.001) TCGA-XK-AAIW-01 9 136298780 136298780 G A ADAMTS13 Missense_Mutation p.A422T 0.45 tolerated(0.3) benign(0.014) TCGA-XK-AAIW-01 9 136501721 136501721 C T DBH Silent p.L76L 0.48 TCGA-XK-AAIW-01 9 136634554 136634554 C T VAV2 Missense_Mutation p.A807T 0.30 tolerated(0.31) benign(0.001) TCGA-XK-AAIW-01 9 136641200 136641200 C T VAV2 Silent p.P656P 0.44 TCGA-XK-AAIW-01 9 136907070 136907070 C T BRD3 Missense_Mutation p.V407M 0.17 deleterious(0) probably_damaging(0.986) TCGA-XK-AAIW-01 9 137023095 137023095 C T WDR5 Silent p.L329L 0.41 TCGA-XK-AAIW-01 9 137313559 137313559 A G RXRA Missense_Mutation p.D273G 0.25 deleterious(0.04) possibly_damaging(0.869) TCGA-XK-AAIW-01 9 137681047 137681047 G A COL5A1 Missense_Mutation p.G898D 0.39 unknown(0) TCGA-XK-AAIW-01 9 137721840 137721840 C T COL5A1 Missense_Mutation p.P1696S 0.44 unknown(0) TCGA-XK-AAIW-01 9 137990194 137990194 C T OLFM1 Silent p.A155A 0.38 TCGA-XK-AAIW-01 9 138011583 138011583 C T OLFM1 Silent p.A321A 0.39 TCGA-XK-AAIW-01 9 138395974 138395974 C A MRPS2 Missense_Mutation p.L296M 0.25 deleterious_low_confidence(0) benign(0.01) TCGA-XK-AAIW-01 9 138457638 138457638 C T PAEP Silent p.C178C 0.37 TCGA-XK-AAIW-01 9 138710412 138710412 C T CAMSAP1 Missense_Mutation p.R1337H 0.41 deleterious(0) probably_damaging(0.931) TCGA-XK-AAIW-01 9 138742168 138742168 C A CAMSAP1 Missense_Mutation p.K316N 0.49 deleterious(0) probably_damaging(0.951) TCGA-XK-AAIW-01 9 139008328 139008328 C T C9orf69 Silent p.%3D 0.44 TCGA-XK-AAIW-01 9 139264857 139264857 G A CARD9 Silent p.I280I 0.44 TCGA-XK-AAIW-01 9 139311544 139311544 G A PMPCA Missense_Mutation p.E259K 0.13 deleterious(0.03) benign(0.158) TCGA-XK-AAIW-01 9 139311571 139311571 C T PMPCA Missense_Mutation p.R268W 0.38 deleterious(0) possibly_damaging(0.773) TCGA-XK-AAIW-01 9 139391156 139391156 G A NOTCH1 Silent p.G2345G 0.18 TCGA-XK-AAIW-01 9 139400023 139400023 G A NOTCH1 Missense_Mutation p.P1442L 0.25 deleterious(0.01) possibly_damaging(0.893) TCGA-XK-AAIW-01 9 139402764 139402764 C T NOTCH1 Missense_Mutation p.R1082H 0.37 tolerated(0.22) benign(0.022) TCGA-XK-AAIW-01 9 139410012 139410012 C A NOTCH1 Missense_Mutation p.S609I 0.43 deleterious(0) probably_damaging(0.955) TCGA-XK-AAIW-01 9 139571064 139571064 G A AGPAT2 Silent p.G187G 0.48 TCGA-XK-AAIW-01 9 139649707 139649707 G A LCN8 Missense_Mutation p.A137V 0.36 tolerated(1) benign(0.003) TCGA-XK-AAIW-01 9 139738942 139738942 G A C9orf172 Missense_Mutation p.A26T 0.78 tolerated(0.49) benign(0.001) TCGA-XK-AAIW-01 9 139757758 139757758 C T EDF1 Silent p.T91T 0.44 TCGA-XK-AAIW-01 9 139820270 139820270 G A TRAF2 Missense_Mutation p.V475I 0.36 tolerated(0.06) benign(0.07) TCGA-XK-AAIW-01 9 139835726 139835726 G A FBXW5 Silent p.D478D 0.69 TCGA-XK-AAIW-01 9 139841131 139841131 C T C8G Silent p.H195H 0.29 TCGA-XK-AAIW-01 9 139907310 139907310 C T ABCA2 Silent p.A1645A 0.64 TCGA-XK-AAIW-01 9 139912118 139912118 G A ABCA2 Silent p.N746N 0.27 TCGA-XK-AAIW-01 9 139913201 139913201 C T ABCA2 Missense_Mutation p.A597T 0.36 tolerated(0.12) possibly_damaging(0.755) TCGA-XK-AAIW-01 9 139937391 139937391 G A NPDC1 Missense_Mutation p.R83C 0.30 deleterious(0.01) probably_damaging(0.959) TCGA-XK-AAIW-01 9 139975224 139975224 G A UAP1L1 Missense_Mutation p.R421H 0.29 deleterious(0) possibly_damaging(0.652) TCGA-XK-AAIW-01 9 140043502 140043502 G A GRIN1 Silent p.V225V 0.21 TCGA-XK-AAIW-01 9 140074793 140074793 T C ANAPC2 Missense_Mutation p.E577G 0.39 deleterious(0) benign(0.302) TCGA-XK-AAIW-01 9 140082419 140082419 G A ANAPC2 Missense_Mutation p.A85V 0.24 tolerated(0.19) benign(0.05) TCGA-XK-AAIW-01 9 140109367 140109367 C T NDOR1 Missense_Mutation p.S321F 0.39 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 9 140139876 140139876 C T FAM166A Silent p.P135P 0.34 TCGA-XK-AAIW-01 9 140151431 140151431 C T NELFB Silent p.S174S 0.43 TCGA-XK-AAIW-01 9 140361841 140361841 G T PNPLA7 Silent p.A989A 0.18 TCGA-XK-AAIW-01 9 140391713 140391713 G A PNPLA7 Missense_Mutation p.R647C 0.27 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 9 140446702 140446702 G A MRPL41 Missense_Mutation p.V57I 0.36 tolerated(1) benign(0.083) TCGA-XK-AAIW-01 9 140707502 140707502 A - EHMT1 Frame_Shift_Del p.G972Efs*20 0.08 TCGA-XK-AAIW-01 9 140941391 140941391 G A CACNA1B Missense_Mutation p.R1150K 0.35 tolerated(0.05) benign(0.025) TCGA-XK-AAIW-01 9 14125766 14125766 C A NFIB Splice_Site p.X309_splice 0.39 TCGA-XK-AAIW-01 9 14808119 14808119 G A FREM1 Silent p.G969G 0.40 TCGA-XK-AAIW-01 9 15478515 15478515 G A PSIP1 Missense_Mutation p.P197S 0.41 deleterious(0) probably_damaging(0.915) TCGA-XK-AAIW-01 9 15778980 15778980 G A CCDC171 Silent p.S971S 0.33 TCGA-XK-AAIW-01 9 16436967 16436967 C T BNC2 Missense_Mutation p.A409T 0.31 tolerated(0.3) benign(0) TCGA-XK-AAIW-01 9 18681926 18681926 C T ADAMTSL1 Silent p.C486C 0.36 TCGA-XK-AAIW-01 9 18887911 18887911 G A ADAMTSL1 Silent p.T1444T 0.40 TCGA-XK-AAIW-01 9 18928482 18928482 G A FAM154A Silent p.C331C 0.53 TCGA-XK-AAIW-01 9 19058263 19058263 G A HAUS6 Silent p.R834R 0.32 TCGA-XK-AAIW-01 9 19116297 19116297 C A PLIN2 Missense_Mutation p.E421D 0.39 tolerated(0.15) benign(0.014) TCGA-XK-AAIW-01 9 19358036 19358036 C T DENND4C Nonsense_Mutation p.R1631* 0.32 TCGA-XK-AAIW-01 9 19376346 19376346 C T RPS6 Missense_Mutation p.R232H 0.07 tolerated(0.1) unknown(0) TCGA-XK-AAIW-01 9 2060865 2060865 G T SMARCA2 Missense_Mutation p.R524M 0.33 possibly_damaging(0.507) TCGA-XK-AAIW-01 9 21334742 21334742 G A KLHL9 Silent p.G39G 0.51 TCGA-XK-AAIW-01 9 21440949 21440949 G A IFNA1 Missense_Mutation p.R148Q 0.30 tolerated(1) benign(0.004) TCGA-XK-AAIW-01 9 21854832 21854832 C T MTAP Missense_Mutation p.A218V 0.44 tolerated(0.81) benign(0.118) TCGA-XK-AAIW-01 9 22008999 22008999 C T CDKN2B 5'UTR 0.33 TCGA-XK-AAIW-01 9 2639945 2639945 T C VLDLR Missense_Mutation p.C97R 0.42 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 2653935 2653935 C T VLDLR 3'UTR 0.32 TCGA-XK-AAIW-01 9 26842623 26842623 T C CAAP1 Silent p.V254V 0.40 TCGA-XK-AAIW-01 9 26907936 26907936 A G PLAA Missense_Mutation p.L573S 0.47 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 9 26923257 26923257 C T PLAA Missense_Mutation p.A320T 0.08 tolerated(0.38) benign(0.004) TCGA-XK-AAIW-01 9 27206684 27206684 C T TEK Silent p.D823D 0.53 TCGA-XK-AAIW-01 9 32440537 32440537 C T ACO1 Silent p.Y774Y 0.33 TCGA-XK-AAIW-01 9 32457353 32457353 T C DDX58 Missense_Mutation p.K849E 0.27 deleterious(0) possibly_damaging(0.552) TCGA-XK-AAIW-01 9 32466305 32466305 C A DDX58 Missense_Mutation p.A774S 0.38 tolerated(0.44) benign(0.019) TCGA-XK-AAIW-01 9 3248153 3248153 C T RFX3 Missense_Mutation p.S616N 0.40 deleterious(0) probably_damaging(0.95) TCGA-XK-AAIW-01 9 32488832 32488833 - T DDX58 Frame_Shift_Ins p.F285Ifs*20 0.29 TCGA-XK-AAIW-01 9 32491392 32491392 G A DDX58 Missense_Mutation p.L200F 0.31 tolerated(0.65) benign(0.005) TCGA-XK-AAIW-01 9 32541790 32541790 G A TOPORS Silent p.D911D 0.38 TCGA-XK-AAIW-01 9 32542457 32542457 C T TOPORS Missense_Mutation p.R689H 0.18 tolerated_low_confidence(0.26) unknown(0) TCGA-XK-AAIW-01 9 32543368 32543368 G A TOPORS Silent p.S385S 0.22 TCGA-XK-AAIW-01 9 3263044 3263044 T C RFX3 Missense_Mutation p.Y499C 0.36 deleterious(0) possibly_damaging(0.88) TCGA-XK-AAIW-01 9 32633053 32633053 C T TAF1L Missense_Mutation p.R842Q 0.31 deleterious(0) probably_damaging(0.957) TCGA-XK-AAIW-01 9 32784344 32784344 G A TMEM215 Missense_Mutation p.A55T 0.34 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 9 33029903 33029903 C A DNAJA1 Missense_Mutation p.L111I 0.34 tolerated(0.05) benign(0.024) TCGA-XK-AAIW-01 9 33036611 33036611 C T DNAJA1 Silent p.L266L 0.25 TCGA-XK-AAIW-01 9 33265135 33265135 G A CHMP5 Missense_Mutation p.C20Y 0.35 deleterious(0.04) possibly_damaging(0.515) TCGA-XK-AAIW-01 9 34622047 34622047 C T ARID3C Missense_Mutation p.A370T 0.42 deleterious(0) possibly_damaging(0.783) TCGA-XK-AAIW-01 9 34635742 34635742 C T SIGMAR1 Missense_Mutation p.A187T 0.55 deleterious(0.03) probably_damaging(0.968) TCGA-XK-AAIW-01 9 35091339 35091339 G A PIGO Silent p.L849L 0.33 TCGA-XK-AAIW-01 9 35091523 35091523 G - PIGO Frame_Shift_Del p.T788Lfs*25 0.29 TCGA-XK-AAIW-01 9 35100964 35100964 C T STOML2 Missense_Mutation p.A257T 0.41 deleterious(0) probably_damaging(0.987) TCGA-XK-AAIW-01 9 35102754 35102754 C T STOML2 Missense_Mutation p.V38I 0.42 tolerated(1) benign(0.005) TCGA-XK-AAIW-01 9 35399172 35399172 C T UNC13B Missense_Mutation p.A1281V 0.36 deleterious(0) possibly_damaging(0.902) TCGA-XK-AAIW-01 9 35546639 35546639 A C RUSC2 Silent p.R41R 0.32 TCGA-XK-AAIW-01 9 35662261 35662261 A G ARHGEF39 Missense_Mutation p.S303P 0.31 deleterious(0.01) possibly_damaging(0.588) TCGA-XK-AAIW-01 9 35689221 35689221 C A TPM2 Missense_Mutation p.E54D 0.34 deleterious(0.01) possibly_damaging(0.666) TCGA-XK-AAIW-01 9 35700341 35700341 G T TLN1 Silent p.T2169T 0.48 TCGA-XK-AAIW-01 9 35703882 35703882 C T TLN1 Missense_Mutation p.A2083T 0.11 deleterious(0) possibly_damaging(0.647) TCGA-XK-AAIW-01 9 35707456 35707456 G A TLN1 Silent p.N1554N 0.45 TCGA-XK-AAIW-01 9 35716542 35716542 G A TLN1 Nonsense_Mutation p.R824* 0.40 TCGA-XK-AAIW-01 9 35733078 35733078 C T CREB3 Missense_Mutation p.P72L 0.37 tolerated(0.17) benign(0.149) TCGA-XK-AAIW-01 9 35740294 35740294 G A GBA2 Nonsense_Mutation p.R399* 0.43 TCGA-XK-AAIW-01 9 35807107 35807107 C T NPR2 Silent p.G869G 0.42 TCGA-XK-AAIW-01 9 35957181 35957181 C A OR2S2 Missense_Mutation p.K305N 0.44 deleterious(0.02) benign(0.191) TCGA-XK-AAIW-01 9 36087701 36087701 C T RECK Silent p.C216C 0.37 TCGA-XK-AAIW-01 9 36123066 36123066 C T RECK 3'UTR 0.50 TCGA-XK-AAIW-01 9 36162402 36162402 C T GLIPR2 Silent p.G116G 0.28 TCGA-XK-AAIW-01 9 36246342 36246342 C T GNE Missense_Mutation p.R132H 0.39 deleterious(0.01) probably_damaging(0.968) TCGA-XK-AAIW-01 9 36351115 36351115 G A RNF38 Silent p.Y420Y 0.42 TCGA-XK-AAIW-01 9 37304288 37304289 - A ZCCHC7 Frame_Shift_Ins p.N255Kfs*36 0.31 TCGA-XK-AAIW-01 9 37441732 37441732 G A ZBTB5 Missense_Mutation p.P273S 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-XK-AAIW-01 9 37541447 37541447 G A FBXO10 Nonsense_Mutation p.R107* 0.46 TCGA-XK-AAIW-01 9 37745710 37745710 G T FRMPD1 Missense_Mutation p.K1227N 0.44 deleterious_low_confidence(0.05) benign(0.159) TCGA-XK-AAIW-01 9 37746200 37746200 G A FRMPD1 Missense_Mutation p.A1391T 0.84 tolerated(0.53) benign(0.003) TCGA-XK-AAIW-01 9 38397186 38397186 C T ALDH1B1 Missense_Mutation p.P481S 0.21 deleterious(0) possibly_damaging(0.451) TCGA-XK-AAIW-01 9 38414122 38414122 G A IGFBPL1 Missense_Mutation p.A180V 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-XK-AAIW-01 9 40774425 40774425 C T ZNF658 Missense_Mutation p.A284T 0.36 tolerated(0.44) benign(0) TCGA-XK-AAIW-01 9 41962582 41962582 C T RP11-204M4.2 RNA 0.11 TCGA-XK-AAIW-01 9 420486 420486 A G DOCK8 Missense_Mutation p.Q1309R 0.45 tolerated(1) benign(0.008) TCGA-XK-AAIW-01 9 43627507 43627507 C T SPATA31A6 Missense_Mutation p.G394R 0.44 tolerated(0.39) benign(0.02) TCGA-XK-AAIW-01 9 43815972 43815973 - T CNTNAP3B Frame_Shift_Ins p.L245Sfs*2 0.15 TCGA-XK-AAIW-01 9 43816768 43816768 A G CNTNAP3B Missense_Mutation p.T292A 0.15 deleterious(0.04) possibly_damaging(0.845) TCGA-XK-AAIW-01 9 43822688 43822688 T C CNTNAP3B Silent p.R414R 0.22 TCGA-XK-AAIW-01 9 5069188 5069188 G A JAK2 Missense_Mutation p.C498Y 0.28 deleterious(0) probably_damaging(0.909) TCGA-XK-AAIW-01 9 5300248 5300248 T C RLN2 Silent p.R136R 0.43 TCGA-XK-AAIW-01 9 5361129 5361129 G T PLGRKT Missense_Mutation p.L91I 0.17 tolerated(0.1) benign(0.403) TCGA-XK-AAIW-01 9 5769250 5769250 C T KIAA1432 Nonsense_Mutation p.R1140* 0.42 TCGA-XK-AAIW-01 9 5988467 5988467 A G KIAA2026 Silent p.C224C 0.10 TCGA-XK-AAIW-01 9 6328941 6328941 G A TPD52L3 Missense_Mutation p.A116T 0.34 tolerated(0.27) benign(0.09) TCGA-XK-AAIW-01 9 70177107 70177107 G T FOXD4L5 Missense_Mutation p.P293T 0.22 deleterious_low_confidence(0.03) probably_damaging(0.981) TCGA-XK-AAIW-01 9 70918906 70918906 C T FOXD4L3 Nonsense_Mutation p.R347* 0.43 TCGA-XK-AAIW-01 9 71002484 71002484 G A PGM5 Missense_Mutation p.R226H 0.39 tolerated(0.6) benign(0.102) TCGA-XK-AAIW-01 9 71144510 71144510 G A PGM5 Missense_Mutation p.A548T 0.37 deleterious(0) possibly_damaging(0.762) TCGA-XK-AAIW-01 9 71835923 71835923 T C TJP2 Missense_Mutation p.Y186H 0.50 tolerated(0.22) probably_damaging(0.93) TCGA-XK-AAIW-01 9 72047551 72047551 G A APBA1 Silent p.G781G 0.42 TCGA-XK-AAIW-01 9 72067036 72067036 A G APBA1 Splice_Site p.X656_splice 0.14 TCGA-XK-AAIW-01 9 72131762 72131762 T C APBA1 Missense_Mutation p.Y122C 0.29 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-XK-AAIW-01 9 72723166 72723166 G A MAMDC2 Missense_Mutation p.G63E 0.42 tolerated(0.28) benign(0.269) TCGA-XK-AAIW-01 9 74481729 74481729 C T ABHD17B Missense_Mutation p.V281M 0.15 deleterious(0.02) possibly_damaging(0.745) TCGA-XK-AAIW-01 9 74489562 74489562 G A ABHD17B Silent p.D145D 0.24 TCGA-XK-AAIW-01 9 75407265 75407265 A G TMC1 Silent p.G521G 0.13 TCGA-XK-AAIW-01 9 77415342 77415342 C T TRPM6 Missense_Mutation p.R689H 0.46 deleterious(0.02) possibly_damaging(0.628) TCGA-XK-AAIW-01 9 77563093 77563093 G T C9orf40 Silent p.T152T 0.43 TCGA-XK-AAIW-01 9 77683992 77683992 G A NMRK1 Missense_Mutation p.S139F 0.35 deleterious(0) benign(0.204) TCGA-XK-AAIW-01 9 77761670 77761670 G A OSTF1 3'UTR 0.45 TCGA-XK-AAIW-01 9 78907174 78907174 C T PCSK5 Silent p.C1056C 0.16 TCGA-XK-AAIW-01 9 78942929 78942929 C T PCSK5 Silent p.C1421C 0.31 TCGA-XK-AAIW-01 9 79117907 79117907 T A GCNT1 Missense_Mutation p.Y204N 0.47 deleterious(0) possibly_damaging(0.869) TCGA-XK-AAIW-01 9 79321905 79321905 C A PRUNE2 Missense_Mutation p.S1762I 0.20 deleterious(0.02) possibly_damaging(0.793) TCGA-XK-AAIW-01 9 79323043 79323043 T C PRUNE2 Missense_Mutation p.I1383V 0.32 tolerated(1) benign(0.01) TCGA-XK-AAIW-01 9 79461527 79461527 C T PRUNE2 Missense_Mutation p.V138I 0.42 deleterious(0.05) benign(0.001) TCGA-XK-AAIW-01 9 79875065 79875065 G A VPS13A Silent p.G784G 0.44 TCGA-XK-AAIW-01 9 79890990 79890990 G A VPS13A Missense_Mutation p.E893K 0.15 tolerated(0.43) benign(0.002) TCGA-XK-AAIW-01 9 79929492 79929492 T C VPS13A Missense_Mutation p.Y1442H 0.46 tolerated(0.12) benign(0.002) TCGA-XK-AAIW-01 9 80040627 80040627 C T GNA14 Missense_Mutation p.R243H 0.36 deleterious(0) benign(0.321) TCGA-XK-AAIW-01 9 80915565 80915565 C T PSAT1 Silent p.G36G 0.48 TCGA-XK-AAIW-01 9 80921334 80921334 G A PSAT1 Missense_Mutation p.V168I 0.35 tolerated(0.1) benign(0.026) TCGA-XK-AAIW-01 9 82333770 82333770 G A TLE4 Missense_Mutation p.A492T 0.35 deleterious(0.01) possibly_damaging(0.478) TCGA-XK-AAIW-01 9 8404589 8404589 G A PTPRD Silent p.Y1386Y 0.43 TCGA-XK-AAIW-01 9 84208159 84208159 A C TLE1 Silent p.G454G 0.32 TCGA-XK-AAIW-01 9 84226784 84226784 G A TLE1 Missense_Mutation p.T385I 0.53 tolerated(0.09) benign(0.15) TCGA-XK-AAIW-01 9 84533090 84533090 G A SPATA31D5P RNA 0.36 TCGA-XK-AAIW-01 9 8499806 8499806 C A PTPRD Missense_Mutation p.E721D 0.27 tolerated(0.13) probably_damaging(0.949) TCGA-XK-AAIW-01 9 85615852 85615852 C T RASEF Missense_Mutation p.G466R 0.17 tolerated(0.62) benign(0.002) TCGA-XK-AAIW-01 9 85640744 85640744 C T RASEF Missense_Mutation p.R175H 0.35 tolerated(0.07) benign(0.022) TCGA-XK-AAIW-01 9 85863022 85863022 G A FRMD3 Silent p.G535G 0.42 TCGA-XK-AAIW-01 9 86514598 86514598 G A KIF27 Missense_Mutation p.A527V 0.36 deleterious(0.03) benign(0.032) TCGA-XK-AAIW-01 9 86518655 86518655 G A KIF27 Missense_Mutation p.R260W 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 9 86617190 86617190 C T RMI1 Missense_Mutation p.T430I 0.38 tolerated(0.37) benign(0.002) TCGA-XK-AAIW-01 9 86893128 86893128 T C SLC28A3 3'UTR 0.25 TCGA-XK-AAIW-01 9 86900404 86900404 C T SLC28A3 Nonsense_Mutation p.W501* 0.42 TCGA-XK-AAIW-01 9 88162166 88162166 C T AGTPBP1 Missense_Mutation p.R1140Q 0.09 tolerated(0.3) benign(0.015) TCGA-XK-AAIW-01 9 88248234 88248234 C T AGTPBP1 Missense_Mutation p.R413H 0.37 tolerated(0.19) benign(0.002) TCGA-XK-AAIW-01 9 88284431 88284431 G A AGTPBP1 Missense_Mutation p.P211S 0.14 deleterious(0.02) possibly_damaging(0.905) TCGA-XK-AAIW-01 9 88650460 88650460 C T GOLM1 Missense_Mutation p.V280M 0.38 tolerated(0.19) benign(0.04) TCGA-XK-AAIW-01 9 88924393 88924393 A G ZCCHC6 Silent p.I1189I 0.36 TCGA-XK-AAIW-01 9 90321624 90321624 A G DAPK1 Missense_Mutation p.D1213G 0.44 deleterious(0) benign(0.008) TCGA-XK-AAIW-01 9 90345356 90345356 G A CTSL Missense_Mutation p.G282D 0.34 deleterious(0) probably_damaging(0.972) TCGA-XK-AAIW-01 9 90500610 90500610 T C SPATA31E1 Missense_Mutation p.L403P 0.31 tolerated(0.34) benign(0.004) TCGA-XK-AAIW-01 9 91063856 91063856 G A SPIN1 Missense_Mutation p.G18D 0.44 tolerated(0.08) benign(0.202) TCGA-XK-AAIW-01 9 91606884 91606884 C T C9orf47 Missense_Mutation p.S197L 0.36 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-XK-AAIW-01 9 91940523 91940523 T G SECISBP2 Missense_Mutation p.F122V 0.33 tolerated(0.22) benign(0.066) TCGA-XK-AAIW-01 9 93657958 93657958 G A SYK 3'UTR 0.36 TCGA-XK-AAIW-01 9 94486292 94486292 C T ROR2 Silent p.P828P 0.42 TCGA-XK-AAIW-01 9 95019010 95019010 G T IARS Missense_Mutation p.L697M 0.43 deleterious(0.04) benign(0.363) TCGA-XK-AAIW-01 9 95228839 95228839 G A ASPN Silent p.N134N 0.25 TCGA-XK-AAIW-01 9 95258764 95258764 T C ECM2 Missense_Mutation p.N645D 0.40 tolerated(0.1) benign(0.014) TCGA-XK-AAIW-01 9 95280145 95280145 T C ECM2 Missense_Mutation p.H102R 0.41 tolerated(0.24) benign(0.004) TCGA-XK-AAIW-01 9 95400457 95400457 C T IPPK Missense_Mutation p.A248T 0.35 tolerated(0.4) benign(0.032) TCGA-XK-AAIW-01 9 95481033 95481033 C T BICD2 Missense_Mutation p.A632T 0.36 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 9 95481557 95481557 C T BICD2 Missense_Mutation p.R457H 0.47 tolerated(0.07) benign(0.003) TCGA-XK-AAIW-01 9 95618579 95618579 C T ZNF484 Missense_Mutation p.V15I 0.41 deleterious(0.05) benign(0.047) TCGA-XK-AAIW-01 9 95796900 95796900 C T FGD3 Silent p.S621S 0.33 TCGA-XK-AAIW-01 9 95993352 95993352 C T WNK2 Missense_Mutation p.A346V 0.40 unknown(0) TCGA-XK-AAIW-01 9 96079848 96079848 C T WNK2 Missense_Mutation p.A2225V 0.41 unknown(0) TCGA-XK-AAIW-01 9 96214909 96214909 A G FAM120AOS Missense_Mutation p.V28A 0.31 deleterious_low_confidence(0) unknown(0) TCGA-XK-AAIW-01 9 96439899 96439899 G A PHF2 Missense_Mutation p.A1078T 0.14 deleterious(0) possibly_damaging(0.499) TCGA-XK-AAIW-01 9 97218567 97218567 G A HIATL1 Silent p.T358T 0.33 TCGA-XK-AAIW-01 9 97349726 97349726 C T FBP2 Missense_Mutation p.V66M 0.12 deleterious(0) possibly_damaging(0.729) TCGA-XK-AAIW-01 9 97380094 97380094 C T FBP1 Missense_Mutation p.D128N 0.31 deleterious(0) benign(0.436) TCGA-XK-AAIW-01 9 97863982 97863982 G A FANCC 3'UTR 0.35 TCGA-XK-AAIW-01 9 97873813 97873813 C T FANCC Missense_Mutation p.A421T 0.09 deleterious(0.04) possibly_damaging(0.899) TCGA-XK-AAIW-01 9 98774580 98774580 G A ERCC6L2 Missense_Mutation p.A222T 0.35 tolerated(0.09) benign(0.432) TCGA-XK-AAIW-01 9 98775458 98775458 C T ERCC6L2 Silent p.N514N 0.39 TCGA-XK-AAIW-01 9 99154699 99154699 C T ZNF367 Missense_Mutation p.A271T 0.48 tolerated(0.08) benign(0.007) TCGA-XK-AAIW-01 9 99227684 99227684 G A HABP4 Missense_Mutation p.R193H 0.35 deleterious(0.04) possibly_damaging(0.824) TCGA-XK-AAIW-01 9 99489025 99489025 G A RP11-535M15.2 RNA 0.25 TCGA-XK-AAIW-01 9 99521387 99521387 G A ZNF510 Silent p.N575N 0.34 TCGA-XK-AAIW-01 9 99581281 99581281 G A ZNF782 Missense_Mutation p.P342S 0.35 tolerated(0.57) benign(0.004) TCGA-XK-AAIW-01 X 100911832 100911832 G A ARMCX2 Missense_Mutation p.A248V 0.75 tolerated_low_confidence(0.16) benign(0.002) TCGA-XK-AAIW-01 X 100912112 100912112 G A ARMCX2 Missense_Mutation p.P155S 0.89 tolerated_low_confidence(0.12) benign(0.003) TCGA-XK-AAIW-01 X 101858624 101858624 A G ARMCX5 Missense_Mutation p.K519E 0.69 deleterious(0.03) probably_damaging(0.998) TCGA-XK-AAIW-01 X 101912705 101912705 C T GPRASP1 Silent p.G1288G 0.50 TCGA-XK-AAIW-01 X 101969964 101969964 C A GPRASP2 Missense_Mutation p.S56Y 0.84 deleterious(0.01) benign(0.346) TCGA-XK-AAIW-01 X 102004720 102004720 G A BHLHB9 Missense_Mutation p.R266H 0.12 tolerated(0.12) benign(0) TCGA-XK-AAIW-01 X 102564437 102564437 G A BEX2 3'UTR 0.81 TCGA-XK-AAIW-01 X 106038981 106038981 A G RNF128 3'UTR 0.79 TCGA-XK-AAIW-01 X 106486556 106486556 A - PIH1D3 3'UTR 0.44 TCGA-XK-AAIW-01 X 106769852 106769852 G A FRMPD3 Missense_Mutation p.E45K 0.79 tolerated(0.11) benign(0.066) TCGA-XK-AAIW-01 X 106844139 106844139 C T FRMPD3 Missense_Mutation p.S990L 0.93 deleterious_low_confidence(0) possibly_damaging(0.653) TCGA-XK-AAIW-01 X 107402841 107402841 C T COL4A6 Missense_Mutation p.V1556I 0.65 benign(0.021) TCGA-XK-AAIW-01 X 107406169 107406169 G T COL4A6 Missense_Mutation p.P1391H 0.81 probably_damaging(0.998) TCGA-XK-AAIW-01 X 107849988 107849988 C T COL4A5 Missense_Mutation p.A754V 0.84 unknown(0) TCGA-XK-AAIW-01 X 109696269 109696269 G A RGAG1 Silent p.T808T 0.85 TCGA-XK-AAIW-01 X 110439716 110439716 C T PAK3 Nonsense_Mutation p.R455* 0.77 TCGA-XK-AAIW-01 X 112034009 112034009 C T AMOT Missense_Mutation p.R643H 0.92 unknown(0) TCGA-XK-AAIW-01 X 115593953 115593953 C T CT83 Missense_Mutation p.R22H 0.94 tolerated(0.38) possibly_damaging(0.715) TCGA-XK-AAIW-01 X 117788703 117788703 G A DOCK11 Missense_Mutation p.A1612T 0.88 tolerated(0.09) probably_damaging(0.931) TCGA-XK-AAIW-01 X 117959424 117959424 C T ZCCHC12 Missense_Mutation p.P73S 0.84 deleterious(0.05) probably_damaging(0.997) TCGA-XK-AAIW-01 X 117959682 117959682 G A ZCCHC12 Missense_Mutation p.A159T 0.36 deleterious(0.02) possibly_damaging(0.795) TCGA-XK-AAIW-01 X 118221659 118221659 A G KIAA1210 Silent p.A1178A 0.77 TCGA-XK-AAIW-01 X 118676491 118676491 C T CXorf56 Missense_Mutation p.E164K 0.88 deleterious(0.02) benign(0.086) TCGA-XK-AAIW-01 X 119064005 119064005 G A NKAP Silent p.C349C 0.87 TCGA-XK-AAIW-01 X 119211129 119211129 T C RHOXF2B Silent p.G68G 0.32 TCGA-XK-AAIW-01 X 119694003 119694003 G A CUL4B Missense_Mutation p.T182I 0.80 tolerated(0.22) benign(0.009) TCGA-XK-AAIW-01 X 120009362 120009362 C T CT47B1 Missense_Mutation p.A55T 0.82 tolerated(0.29) benign(0.155) TCGA-XK-AAIW-01 X 122318306 122318306 C T GRIA3 5'UTR 1.00 TCGA-XK-AAIW-01 X 122761551 122761551 T C THOC2 Missense_Mutation p.Q917R 0.66 tolerated(0.23) benign(0.017) TCGA-XK-AAIW-01 X 123514535 123514535 T C TENM1 Missense_Mutation p.T2684A 0.77 deleterious(0.01) possibly_damaging(0.881) TCGA-XK-AAIW-01 X 123514607 123514607 G A TENM1 Missense_Mutation p.R2660C 0.67 deleterious(0.01) probably_damaging(0.995) TCGA-XK-AAIW-01 X 125685777 125685777 C T DCAF12L1 Missense_Mutation p.G272D 0.69 tolerated(0.41) benign(0.013) TCGA-XK-AAIW-01 X 12704240 12704240 C A FRMPD4 Missense_Mutation p.L200I 0.76 deleterious(0.01) probably_damaging(0.998) TCGA-XK-AAIW-01 X 128896711 128896711 G A XPNPEP2 Missense_Mutation p.E569K 0.83 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 X 12903784 12903784 G T TLR7 Missense_Mutation p.D53Y 0.32 tolerated(0.06) benign(0.031) TCGA-XK-AAIW-01 X 12904067 12904067 C T TLR7 Missense_Mutation p.P147L 0.84 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 X 12906105 12906105 C T TLR7 Silent p.I826I 0.72 TCGA-XK-AAIW-01 X 129518840 129518840 C T GPR119 Missense_Mutation p.M194I 0.56 tolerated(0.57) benign(0.043) TCGA-XK-AAIW-01 X 129519098 129519098 C T GPR119 Silent p.K108K 0.81 TCGA-XK-AAIW-01 X 129629515 129629515 C T RP1-274L7.1 Intron 0.50 TCGA-XK-AAIW-01 X 129629816 129629816 G T RP1-274L7.1 Intron 0.33 TCGA-XK-AAIW-01 X 129813662 129813662 C T ENOX2 Missense_Mutation p.G134D 0.80 deleterious(0) probably_damaging(0.965) TCGA-XK-AAIW-01 X 13061930 13061930 G A FAM9C 5'UTR 0.64 TCGA-XK-AAIW-01 X 131188701 131188701 C T MST4 Missense_Mutation p.R29C 0.78 tolerated(0.22) benign(0.028) TCGA-XK-AAIW-01 X 1317492 1317492 C T CRLF2 Silent p.E191E 0.27 TCGA-XK-AAIW-01 X 135067782 135067782 G T SLC9A6 Missense_Mutation p.G41W 0.83 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-XK-AAIW-01 X 136113733 136113733 C T GPR101 Missense_Mutation p.R34H 0.83 deleterious(0) probably_damaging(0.996) TCGA-XK-AAIW-01 X 13635866 13635866 G A EGFL6 Missense_Mutation p.V266M 0.44 deleterious(0) possibly_damaging(0.9) TCGA-XK-AAIW-01 X 136649562 136649562 G A ZIC3 Missense_Mutation p.A238T 0.83 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 X 13792708 13792708 C T GPM6B Intron 0.84 TCGA-XK-AAIW-01 X 138630553 138630553 C T F9 Silent p.C141C 0.49 TCGA-XK-AAIW-01 X 138820132 138820132 G A ATP11C Silent p.S1080S 0.24 TCGA-XK-AAIW-01 X 139006368 139006368 C A MIR505 RNA 0.12 TCGA-XK-AAIW-01 X 141291203 141291203 G A MAGEC2 Missense_Mutation p.L191F 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-XK-AAIW-01 X 144904206 144904206 C T SLITRK2 Missense_Mutation p.A88V 0.26 tolerated(0.42) benign(0.029) TCGA-XK-AAIW-01 X 14938002 14938002 T A MOSPD2 3'UTR 0.67 TCGA-XK-AAIW-01 X 1497614 1497614 G A IL3RA Missense_Mutation p.G313R 0.39 deleterious(0) probably_damaging(0.988) TCGA-XK-AAIW-01 X 149787588 149787588 C T MTM1 Silent p.Y140Y 0.79 TCGA-XK-AAIW-01 X 150842563 150842563 C T PASD1 Nonsense_Mutation p.Q694* 0.74 TCGA-XK-AAIW-01 X 151092278 151092278 C A MAGEA4 Missense_Mutation p.P48T 0.48 tolerated(0.23) benign(0.034) TCGA-XK-AAIW-01 X 151123859 151123859 G A GABRE Missense_Mutation p.A373V 0.76 tolerated(0.06) probably_damaging(0.992) TCGA-XK-AAIW-01 X 152482062 152482062 C T MAGEA1 3'UTR 0.11 TCGA-XK-AAIW-01 X 152482197 152482197 C T MAGEA1 Missense_Mutation p.A272T 0.09 deleterious(0.02) benign(0.033) TCGA-XK-AAIW-01 X 152713217 152713217 C T TREX2 5'UTR 0.86 TCGA-XK-AAIW-01 X 152807867 152807867 G A ATP2B3 Missense_Mutation p.V251M 0.78 deleterious(0.04) probably_damaging(1) TCGA-XK-AAIW-01 X 152807870 152807870 C T ATP2B3 Missense_Mutation p.R252C 0.70 deleterious(0.02) probably_damaging(0.934) TCGA-XK-AAIW-01 X 152815021 152815021 G T ATP2B3 Missense_Mutation p.A469S 0.68 tolerated(0.11) benign(0.177) TCGA-XK-AAIW-01 X 152815040 152815040 C T ATP2B3 Missense_Mutation p.T475M 0.21 deleterious(0) probably_damaging(0.992) TCGA-XK-AAIW-01 X 152936838 152936838 C T PNCK Intron 0.81 TCGA-XK-AAIW-01 X 153001621 153001621 C T ABCD1 Silent p.S379S 0.86 TCGA-XK-AAIW-01 X 153035310 153035310 G A PLXNB3 Nonsense_Mutation p.W538* 0.71 TCGA-XK-AAIW-01 X 153043066 153043066 G A PLXNB3 Silent p.L1751L 0.91 TCGA-XK-AAIW-01 X 153137794 153137794 C T L1CAM Silent p.R71R 0.77 TCGA-XK-AAIW-01 X 153175645 153175645 C T ARHGAP4 Silent p.P752P 0.65 TCGA-XK-AAIW-01 X 153216313 153216313 G A HCFC1 Missense_Mutation p.T1885M 0.75 deleterious(0) probably_damaging(0.99) TCGA-XK-AAIW-01 X 153220570 153220570 C T HCFC1 Missense_Mutation p.A1094T 0.87 deleterious_low_confidence(0.05) possibly_damaging(0.832) TCGA-XK-AAIW-01 X 153248052 153248052 G A TMEM187 Missense_Mutation p.R180H 0.88 tolerated(0.64) benign(0.003) TCGA-XK-AAIW-01 X 153297982 153297982 A G MECP2 Missense_Mutation p.L30P 0.80 deleterious(0.01) probably_damaging(0.991) TCGA-XK-AAIW-01 X 153524218 153524218 G A TKTL1 Silent p.A2A 0.28 TCGA-XK-AAIW-01 X 153647888 153647888 G A TAZ Missense_Mutation p.G156D 0.82 deleterious(0) probably_damaging(0.998) TCGA-XK-AAIW-01 X 153669519 153669519 G A GDI1 Missense_Mutation p.V266M 0.73 deleterious(0.04) possibly_damaging(0.484) TCGA-XK-AAIW-01 X 153694316 153694316 G A PLXNA3 Silent p.R857R 1.00 TCGA-XK-AAIW-01 X 153696474 153696474 C T PLXNA3 Silent p.D1290D 0.88 TCGA-XK-AAIW-01 X 1546862 1546862 C T ASMTL Missense_Mutation p.R221Q 0.40 tolerated(0.76) benign(0.005) TCGA-XK-AAIW-01 X 155003602 155003602 T C SPRY3 Silent p.A23A 0.48 TCGA-XK-AAIW-01 X 16170625 16170625 C T GRPR Missense_Mutation p.L338F 0.79 tolerated(0.84) benign(0.002) TCGA-XK-AAIW-01 X 1714291 1714291 G A AKAP17A Silent p.S259S 0.33 TCGA-XK-AAIW-01 X 17167116 17167116 C T REPS2 3'UTR 0.79 TCGA-XK-AAIW-01 X 1761963 1761963 C T ASMT 3'UTR 0.30 TCGA-XK-AAIW-01 X 18627658 18627658 C A CDKL5 Missense_Mutation p.P707H 0.76 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-XK-AAIW-01 X 19482401 19482401 G A MAP3K15 Silent p.L217L 0.70 TCGA-XK-AAIW-01 X 20222195 20222195 G T RPS6KA3 Silent p.G90G 0.08 TCGA-XK-AAIW-01 X 207434 207434 G A PLCXD1 Silent p.A128A 0.32 TCGA-XK-AAIW-01 X 2161198 2161198 G A DHRSX Missense_Mutation p.R224W 0.29 deleterious(0.01) probably_damaging(0.952) TCGA-XK-AAIW-01 X 2161252 2161252 C T DHRSX Missense_Mutation p.A206T 0.29 tolerated(0.05) benign(0.248) TCGA-XK-AAIW-01 X 2184850 2184850 G A DHRSX Missense_Mutation p.A176V 0.24 deleterious(0.05) benign(0.229) TCGA-XK-AAIW-01 X 22291617 22291617 G A ZNF645 Missense_Mutation p.R170K 0.83 tolerated(0.29) benign(0.135) TCGA-XK-AAIW-01 X 224096 224096 G A GTPBP6 Missense_Mutation p.A224V 0.72 tolerated(0.15) benign(0.155) TCGA-XK-AAIW-01 X 23876770 23876770 C T APOO Missense_Mutation p.V157M 0.92 deleterious(0.02) possibly_damaging(0.61) TCGA-XK-AAIW-01 X 2407778 2407778 G A ZBED1 Missense_Mutation p.A328V 0.36 deleterious(0.01) probably_damaging(0.909) TCGA-XK-AAIW-01 X 2407908 2407908 C T ZBED1 Missense_Mutation p.A285T 0.33 tolerated(0.2) benign(0.002) TCGA-XK-AAIW-01 X 24225495 24225495 C T ZFX Silent p.D233D 0.84 TCGA-XK-AAIW-01 X 24229488 24229488 C T ZFX Missense_Mutation p.P805S 0.82 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-XK-AAIW-01 X 27839513 27839513 C T MAGEB10 Silent p.D30D 0.77 TCGA-XK-AAIW-01 X 30671605 30671605 C T GK 5'UTR 0.18 TCGA-XK-AAIW-01 X 31526329 31526329 A G DMD Intron 0.78 TCGA-XK-AAIW-01 X 3240297 3240297 G A MXRA5 Silent p.S1143S 0.33 TCGA-XK-AAIW-01 X 34961471 34961471 G T FAM47B Missense_Mutation p.V175L 0.60 tolerated(0.33) benign(0.016) TCGA-XK-AAIW-01 X 35984805 35984805 G A CXorf22 Missense_Mutation p.V512I 0.85 tolerated(1) benign(0.007) TCGA-XK-AAIW-01 X 37027835 37027835 G A FAM47C Missense_Mutation p.R451H 0.87 tolerated_low_confidence(0.58) possibly_damaging(0.869) TCGA-XK-AAIW-01 X 37027856 37027856 G A FAM47C Missense_Mutation p.R458Q 0.86 tolerated(0.22) benign(0.18) TCGA-XK-AAIW-01 X 37028326 37028326 G A FAM47C Missense_Mutation p.V615I 0.88 deleterious(0.01) benign(0.026) TCGA-XK-AAIW-01 X 38147244 38147244 G A RPGR Silent p.N541N 0.78 TCGA-XK-AAIW-01 X 38178228 38178228 A G RPGR Missense_Mutation p.V108A 0.81 possibly_damaging(0.686) TCGA-XK-AAIW-01 X 39930266 39930266 G T BCOR Silent p.T1066T 0.74 TCGA-XK-AAIW-01 X 40556412 40556412 C T MED14 Missense_Mutation p.C505Y 0.81 deleterious(0) possibly_damaging(0.894) TCGA-XK-AAIW-01 X 41029390 41029390 G A USP9X Missense_Mutation p.V927I 0.90 tolerated(0.23) benign(0.015) TCGA-XK-AAIW-01 X 41205566 41205566 C T DDX3X Missense_Mutation p.A467V 0.35 deleterious(0.01) benign(0.006) TCGA-XK-AAIW-01 X 44703559 44703559 G A DUSP21 Missense_Mutation p.V61I 0.92 tolerated(0.35) benign(0.022) TCGA-XK-AAIW-01 X 44929288 44929288 C T KDM6A Silent p.T796T 0.93 TCGA-XK-AAIW-01 X 44937657 44937657 C T KDM6A Missense_Mutation p.R949C 0.16 deleterious(0) probably_damaging(0.991) TCGA-XK-AAIW-01 X 47061766 47061766 G A UBA1 Missense_Mutation p.V307M 0.61 tolerated(0.05) benign(0.057) TCGA-XK-AAIW-01 X 47307942 47307942 T C ZNF41 Silent p.K409K 0.90 TCGA-XK-AAIW-01 X 47774323 47774323 A G ZNF81 Missense_Mutation p.D93G 0.80 tolerated(0.58) benign(0.001) TCGA-XK-AAIW-01 X 47836866 47836866 C T ZNF182 Missense_Mutation p.G207D 0.18 tolerated(0.56) benign(0.075) TCGA-XK-AAIW-01 X 48418543 48418543 G A TBC1D25 Missense_Mutation p.R416H 0.92 deleterious(0) probably_damaging(0.989) TCGA-XK-AAIW-01 X 48792092 48792092 T C OTUD5 Missense_Mutation p.T268A 0.76 tolerated(0.17) benign(0.262) TCGA-XK-AAIW-01 X 48891660 48891660 C T TFE3 Missense_Mutation p.R331Q 0.73 tolerated(0.08) benign(0.238) TCGA-XK-AAIW-01 X 48924841 48924841 G T CCDC120 Missense_Mutation p.E362D 0.50 deleterious(0.02) probably_damaging(0.992) TCGA-XK-AAIW-01 X 49142941 49142941 G A PPP1R3F Missense_Mutation p.E597K 1.00 deleterious_low_confidence(0) possibly_damaging(0.709) TCGA-XK-AAIW-01 X 50213386 50213386 C T DGKK RNA 0.85 TCGA-XK-AAIW-01 X 53561001 53561001 C A HUWE1 Missense_Mutation p.R4330M 0.83 unknown(0) TCGA-XK-AAIW-01 X 53620387 53620387 C T HUWE1 Silent p.L1226L 0.93 TCGA-XK-AAIW-01 X 54359609 54359609 G A WNK3 Silent p.D166D 0.09 TCGA-XK-AAIW-01 X 54587094 54587094 C T GNL3L 3'UTR 0.93 TCGA-XK-AAIW-01 X 55117849 55117849 G A PAGE2 Missense_Mutation p.G93D 0.83 tolerated(0.25) possibly_damaging(0.744) TCGA-XK-AAIW-01 X 55777598 55777598 G A RRAGB Missense_Mutation p.R222Q 0.74 tolerated(0.46) benign(0.041) TCGA-XK-AAIW-01 X 56310956 56310956 G A KLF8 3'UTR 0.38 TCGA-XK-AAIW-01 X 57515244 57515244 C T FAAH2 Missense_Mutation p.A493V 0.47 tolerated(0.13) benign(0.158) TCGA-XK-AAIW-01 X 5811651 5811651 C T NLGN4X Missense_Mutation p.R553H 0.80 deleterious(0) probably_damaging(0.984) TCGA-XK-AAIW-01 X 5821329 5821329 C T NLGN4X Missense_Mutation p.G464S 0.28 tolerated(0.13) probably_damaging(0.998) TCGA-XK-AAIW-01 X 63410418 63410418 C T AMER1 Missense_Mutation p.E917K 0.26 tolerated(0.59) benign(0.178) TCGA-XK-AAIW-01 X 63444281 63444281 C T ASB12 Silent p.Q297Q 0.41 TCGA-XK-AAIW-01 X 63444983 63444983 C T ASB12 Missense_Mutation p.G183D 0.16 deleterious(0.01) probably_damaging(1) TCGA-XK-AAIW-01 X 63488557 63488557 C T MTMR8 Missense_Mutation p.D659N 0.50 tolerated_low_confidence(0.4) benign(0) TCGA-XK-AAIW-01 X 63488627 63488627 G A MTMR8 Silent p.G635G 0.50 TCGA-XK-AAIW-01 X 64722867 64722867 C T ZC3H12B Silent p.S763S 0.87 TCGA-XK-AAIW-01 X 65483509 65483509 A G HEPH Missense_Mutation p.I1129V 0.88 tolerated(0.4) benign(0.001) TCGA-XK-AAIW-01 X 69478929 69478929 G A P2RY4 Silent p.T182T 0.78 TCGA-XK-AAIW-01 X 6968396 6968396 C T HDHD1 Missense_Mutation p.V233M 0.83 deleterious(0) benign(0.206) TCGA-XK-AAIW-01 X 69749738 69749738 C T TEX11 Missense_Mutation p.A893T 0.81 deleterious(0.01) benign(0.176) TCGA-XK-AAIW-01 X 70367895 70367895 C T NLGN3 Missense_Mutation p.A99V 0.67 tolerated(0.13) possibly_damaging(0.734) TCGA-XK-AAIW-01 X 70471081 70471081 C T ZMYM3 Missense_Mutation p.R242H 0.68 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-XK-AAIW-01 X 70519912 70519912 C T NONO Missense_Mutation p.R468C 0.22 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-XK-AAIW-01 X 70817888 70817888 G A ACRC Missense_Mutation p.D104N 0.76 possibly_damaging(0.821) TCGA-XK-AAIW-01 X 71800950 71800950 C T PHKA1 Missense_Mutation p.A1192T 0.35 deleterious(0) probably_damaging(1) TCGA-XK-AAIW-01 X 72667140 72667140 T C CDX4 Silent p.T17T 0.73 TCGA-XK-AAIW-01 X 73965443 73965443 C T KIAA2022 Missense_Mutation p.G15R 0.84 deleterious_low_confidence(0.01) benign(0.022) TCGA-XK-AAIW-01 X 75004665 75004665 C T MAGEE2 Silent p.E74E 0.23 TCGA-XK-AAIW-01 X 77301979 77301979 G A ATP7A Missense_Mutation p.R1472H 0.73 tolerated(0.28) benign(0.021) TCGA-XK-AAIW-01 X 77912930 77912930 G T ZCCHC5 Missense_Mutation p.H330N 0.58 tolerated(0.32) benign(0.008) TCGA-XK-AAIW-01 X 77913290 77913290 G T ZCCHC5 Missense_Mutation p.L210M 0.71 deleterious(0) probably_damaging(0.963) TCGA-XK-AAIW-01 X 82764058 82764059 - A POU3F4 Frame_Shift_Ins p.N244Kfs*27 0.71 TCGA-XK-AAIW-01 X 83724079 83724079 G A HDX Nonsense_Mutation p.R218* 0.76 TCGA-XK-AAIW-01 X 8502379 8502379 G T KAL1 Silent p.L655L 0.88 TCGA-XK-AAIW-01 X 85155679 85155679 G A CHM Missense_Mutation p.S462F 0.95 deleterious(0) probably_damaging(0.999) TCGA-XK-AAIW-01 X 8522091 8522091 G A KAL1 Missense_Mutation p.P419L 0.91 deleterious(0.02) possibly_damaging(0.786) TCGA-XK-AAIW-01 X 85769338 85769338 G A DACH2 Missense_Mutation p.R195H 0.61 tolerated(0.87) benign(0.012) TCGA-XK-AAIW-01 X 90690630 90690630 C T PABPC5 Silent p.A18A 0.76 TCGA-XK-AAIW-01 X 91873427 91873427 T A PCDH11X Missense_Mutation p.S1178T 0.88 tolerated_low_confidence(0.83) benign(0) TCGA-XK-AAIW-01 Y 14924838 14924838 C T USP9Y Missense_Mutation p.A1487V 0.78 tolerated(0.52) benign(0.011) TCGA-XK-AAIW-01 Y 15817154 15817154 C T TMSB4Y 3'UTR 0.90 TCGA-XK-AAIW-01 Y 16952580 16952580 C T NLGN4Y Missense_Mutation p.A630V 0.64 tolerated(0.41) benign(0.006) TCGA-XK-AAJ3-01 10 102732612 102732612 A T SEMA4G 5'UTR 0.40 TCGA-XK-AAJ3-01 10 103912061 103912061 T G NOLC1 5'UTR 0.37 TCGA-XK-AAJ3-01 10 115636278 115636278 A T NHLRC2 Splice_Site p.X111_splice 0.36 TCGA-XK-AAJ3-01 10 12070949 12070949 G - UPF2 Frame_Shift_Del p.H314Ifs*14 0.25 TCGA-XK-AAJ3-01 10 56077095 56077095 A T PCDH15 Missense_Mutation p.V271E 0.36 deleterious(0) probably_damaging(0.996) TCGA-XK-AAJ3-01 10 71025575 71025575 G A HKDC1 Splice_Site p.X869_splice 0.23 TCGA-XK-AAJ3-01 11 110451506 110451506 A T ARHGAP20 Missense_Mutation p.Y722N 0.41 deleterious(0.03) possibly_damaging(0.448) TCGA-XK-AAJ3-01 11 3735065 3735065 C A NUP98 Missense_Mutation p.G854C 0.34 deleterious(0) probably_damaging(1) TCGA-XK-AAJ3-01 11 46671735 46671735 A G ATG13 Missense_Mutation p.K109R 0.33 tolerated(0.2) probably_damaging(0.968) TCGA-XK-AAJ3-01 11 59189861 59189861 G A OR5A2 Missense_Mutation p.S189F 0.32 deleterious(0) probably_damaging(0.982) TCGA-XK-AAJ3-01 11 65360511 65360511 C T KCNK7 Missense_Mutation p.A297T 0.24 tolerated(0.48) unknown(0) TCGA-XK-AAJ3-01 11 86665903 86665903 G C FZD4 Silent p.A75A 0.35 TCGA-XK-AAJ3-01 12 124403289 124403289 C T DNAH10 Missense_Mutation p.R3649W 0.26 probably_damaging(0.962) TCGA-XK-AAJ3-01 12 66765526 66765526 A G GRIP1 Missense_Mutation p.M935T 0.34 tolerated(0.33) benign(0.001) TCGA-XK-AAJ3-01 12 97330979 97330979 A G NEDD1 Missense_Mutation p.S316G 0.33 tolerated(0.26) benign(0.003) TCGA-XK-AAJ3-01 14 96730919 96730919 T G BDKRB1 Missense_Mutation p.F300L 0.40 tolerated(1) benign(0.057) TCGA-XK-AAJ3-01 15 58465315 58465315 G A AQP9 Missense_Mutation p.R96Q 0.22 tolerated(0.14) probably_damaging(0.99) TCGA-XK-AAJ3-01 16 15029215 15029215 G C NPIPA1 5'Flank 0.22 TCGA-XK-AAJ3-01 16 67662331 67662331 G A CTCF Missense_Mutation p.S526N 0.05 tolerated(0.52) possibly_damaging(0.698) TCGA-XK-AAJ3-01 17 34192348 34192348 C A C17orf66 Missense_Mutation p.S64I 0.49 deleterious(0.01) possibly_damaging(0.668) TCGA-XK-AAJ3-01 17 34236594 34236594 T A AC015849.16 RNA 0.32 TCGA-XK-AAJ3-01 17 47696430 47696430 C G SPOP Missense_Mutation p.W131C 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-XK-AAJ3-01 17 5984015 5984015 C T WSCD1 Missense_Mutation p.R13C 0.23 deleterious(0.01) possibly_damaging(0.808) TCGA-XK-AAJ3-01 17 9801416 9801416 G A RCVRN Missense_Mutation p.A200V 0.32 tolerated_low_confidence(0.05) unknown(0) TCGA-XK-AAJ3-01 18 11881064 11881064 T C GNAL Missense_Mutation p.I436T 0.33 deleterious(0) probably_damaging(0.999) TCGA-XK-AAJ3-01 19 6535105 6535105 A G TNFSF9 3'UTR 0.28 TCGA-XK-AAJ3-01 1 156347177 156347177 C T RHBG Silent p.G91G 0.35 TCGA-XK-AAJ3-01 1 158261128 158261128 G A CD1C Missense_Mutation p.R89H 0.37 tolerated(0.45) benign(0.004) TCGA-XK-AAJ3-01 1 158436151 158436151 C T OR10K1 Missense_Mutation p.T267I 0.37 deleterious(0.04) benign(0.003) TCGA-XK-AAJ3-01 1 17257025 17257025 A C CROCC Missense_Mutation p.N262T 0.33 benign(0.006) TCGA-XK-AAJ3-01 1 193111116 193111116 G C CDC73 Missense_Mutation p.E217Q 0.31 tolerated(0.08) possibly_damaging(0.544) TCGA-XK-AAJ3-01 1 232650663 232650663 G A SIPA1L2 Silent p.I141I 0.04 TCGA-XK-AAJ3-01 1 37499667 37499667 A G GRIK3 Missense_Mutation p.Y15H 0.38 tolerated_low_confidence(0.07) benign(0.26) TCGA-XK-AAJ3-01 1 87208814 87208814 A G SH3GLB1 Missense_Mutation p.I353V 0.39 deleterious(0.03) possibly_damaging(0.498) TCGA-XK-AAJ3-01 20 35060731 35060731 G C DLGAP4 Missense_Mutation p.W204S 0.39 deleterious(0) probably_damaging(0.966) TCGA-XK-AAJ3-01 20 48807618 48807618 G A CEBPB Silent p.P16P 0.44 TCGA-XK-AAJ3-01 20 61512748 61512748 C T DIDO1 Silent p.L1520L 0.33 TCGA-XK-AAJ3-01 22 37260173 37260173 T C NCF4 Splice_Site p.X39_splice 0.47 TCGA-XK-AAJ3-01 22 47069586 47069586 G A GRAMD4 Missense_Mutation p.R420Q 0.24 tolerated(0.07) possibly_damaging(0.887) TCGA-XK-AAJ3-01 2 125671720 125671720 C T CNTNAP5 Missense_Mutation p.T1259I 0.09 tolerated(1) benign(0.002) TCGA-XK-AAJ3-01 2 171056737 171056737 T A MYO3B Nonsense_Mutation p.Y88* 0.35 TCGA-XK-AAJ3-01 2 197298104 197298104 C T HECW2 Missense_Mutation p.R15Q 0.17 deleterious_low_confidence(0.04) probably_damaging(0.992) TCGA-XK-AAJ3-01 2 219140195 219140195 T A TMBIM1 3'UTR 0.46 TCGA-XK-AAJ3-01 2 69043372 69043372 G A ARHGAP25 Intron 0.35 TCGA-XK-AAJ3-01 3 10967724 10967724 G A SLC6A11 Silent p.A385A 0.38 TCGA-XK-AAJ3-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.29 deleterious(0.04) probably_damaging(0.96) TCGA-XK-AAJ3-01 3 49695316 49695316 C T BSN Missense_Mutation p.P2776L 0.41 unknown(0) TCGA-XK-AAJ3-01 4 122747113 122747113 A C BBS7 Missense_Mutation p.F684V 0.30 deleterious(0.01) probably_damaging(0.956) TCGA-XK-AAJ3-01 4 164061475 164061475 C A NAF1 Missense_Mutation p.D260Y 0.38 deleterious(0) possibly_damaging(0.796) TCGA-XK-AAJ3-01 4 164271862 164271862 C G NPY5R Missense_Mutation p.P146R 0.38 deleterious(0) probably_damaging(1) TCGA-XK-AAJ3-01 4 96052548 96052548 A C BMPR1B Missense_Mutation p.S351R 0.43 deleterious(0) benign(0.415) TCGA-XK-AAJ3-01 5 112151261 112151261 C T APC Nonsense_Mutation p.R302* 0.53 TCGA-XK-AAJ3-01 5 71499621 71499622 - CATG MAP1B Frame_Shift_Ins p.Q2417Hfs*10 0.17 TCGA-XK-AAJ3-01 7 100371028 100371028 A G ZAN Missense_Mutation p.E1849G 0.52 unknown(0) TCGA-XK-AAJ3-01 7 132959734 132959734 C T EXOC4 Intron 0.49 TCGA-XK-AAJ3-01 7 137092658 137092658 G A DGKI Silent p.T969T 0.35 TCGA-XK-AAJ3-01 7 141957588 141957588 A G PRSS58 5'UTR 0.34 TCGA-XK-AAJ3-01 7 151273533 151273533 T C PRKAG2 Silent p.K290K 0.24 TCGA-XK-AAJ3-01 7 16902255 16902255 C T AGR3 Missense_Mutation p.E69K 0.50 deleterious(0.04) possibly_damaging(0.813) TCGA-XK-AAJ3-01 7 72040530 72040530 T G TYW1B Missense_Mutation p.T280P 0.52 deleterious(0.02) possibly_damaging(0.775) TCGA-XK-AAJ3-01 8 135533215 135533215 C - ZFAT Frame_Shift_Del p.V1049Yfs*12 0.22 TCGA-XK-AAJ3-01 8 22107694 22107694 A G POLR3D Missense_Mutation p.K343R 0.38 tolerated(0.2) benign(0.003) TCGA-XK-AAJ3-01 8 92988173 92988173 A T RUNX1T1 Silent p.P447P 0.34 TCGA-XK-AAJ3-01 9 131671215 131671215 C T LRRC8A Missense_Mutation p.A591V 0.12 tolerated(0.97) benign(0.001) TCGA-XK-AAJ3-01 9 6460608 6460608 A G UHRF2 Missense_Mutation p.K227R 0.38 tolerated(0.46) probably_damaging(0.991) TCGA-XK-AAJ3-01 9 75567854 75567854 A T ALDH1A1 Silent p.T21T 0.37 TCGA-XK-AAJ3-01 X 44941831 44941831 A - KDM6A Frame_Shift_Del p.R1054Efs*29 0.41 TCGA-XK-AAJ3-01 Y 15028886 15028886 A C DDX3Y Silent p.V559V 0.80 TCGA-XK-AAJA-01 10 17089577 17089577 A G CUBN Silent p.D1055D 0.17 TCGA-XK-AAJA-01 10 37421250 37421250 C T ANKRD30A Missense_Mutation p.A142V 0.23 tolerated(1) probably_damaging(0.923) TCGA-XK-AAJA-01 10 96022289 96022289 A T PLCE1 Missense_Mutation p.I1285F 0.05 deleterious(0) possibly_damaging(0.707) TCGA-XK-AAJA-01 11 118464315 118464315 G C ARCN1 Missense_Mutation p.W381C 0.13 deleterious(0) probably_damaging(0.999) TCGA-XK-AAJA-01 11 22249075 22249075 G A ANO5 Silent p.E197E 0.34 TCGA-XK-AAJA-01 11 56511168 56511168 C T OR9G4 Silent p.P40P 0.08 TCGA-XK-AAJA-01 12 104725345 104725345 A C TXNRD1 Missense_Mutation p.T526P 0.29 deleterious(0) probably_damaging(1) TCGA-XK-AAJA-01 12 14772196 14772196 G C GUCY2C Missense_Mutation p.L942V 0.04 deleterious(0) probably_damaging(1) TCGA-XK-AAJA-01 12 21971146 21971146 C T ABCC9 Missense_Mutation p.A1237T 0.23 tolerated(0.56) benign(0.007) TCGA-XK-AAJA-01 12 43819450 43819450 A T ADAMTS20 Missense_Mutation p.I1384K 0.19 tolerated(0.11) possibly_damaging(0.462) TCGA-XK-AAJA-01 12 46598088 46598088 G A SLC38A1 Missense_Mutation p.S273L 0.31 tolerated(0.07) benign(0.055) TCGA-XK-AAJA-01 14 103969417 103969417 G A MARK3 Silent p.G705G 0.31 TCGA-XK-AAJA-01 14 36781227 36781227 T - MBIP Frame_Shift_Del p.N192Ifs*20 0.29 TCGA-XK-AAJA-01 15 76995224 76995224 T A SCAPER Missense_Mutation p.E789D 0.32 tolerated(0.2) benign(0.06) TCGA-XK-AAJA-01 17 73753700 73753700 T G ITGB4 3'UTR 0.33 TCGA-XK-AAJA-01 17 80319926 80319926 C T TEX19 5'UTR 0.26 TCGA-XK-AAJA-01 19 10204481 10204481 C T ANGPTL6 Missense_Mutation p.R280H 0.29 deleterious(0.04) probably_damaging(0.954) TCGA-XK-AAJA-01 19 37618488 37618488 G A ZNF420 Missense_Mutation p.E199K 0.26 deleterious(0.02) possibly_damaging(0.57) TCGA-XK-AAJA-01 19 41009956 41009956 C T SPTBN4 Missense_Mutation p.R528W 0.28 deleterious(0) probably_damaging(0.995) TCGA-XK-AAJA-01 19 5664408 5664408 G T SAFB Missense_Mutation p.R764S 0.21 deleterious(0.03) unknown(0) TCGA-XK-AAJA-01 19 8203370 8203370 C A FBN3 Missense_Mutation p.R315M 0.11 tolerated(0.52) benign(0.1) TCGA-XK-AAJA-01 1 109268475 109268475 G A FNDC7 Silent p.V320V 0.22 TCGA-XK-AAJA-01 1 1325728 1325728 A - CCNL2 Frame_Shift_Del p.E297Kfs*56 0.32 TCGA-XK-AAJA-01 1 154461551 154461551 C T SHE Missense_Mutation p.E334K 0.06 deleterious(0.01) possibly_damaging(0.611) TCGA-XK-AAJA-01 1 16913590 16913590 C T NBPF1 Missense_Mutation p.E245K 0.27 tolerated(0.06) benign(0) TCGA-XK-AAJA-01 1 237670102 237670102 G T RYR2 Missense_Mutation p.W902C 0.24 probably_damaging(0.998) TCGA-XK-AAJA-01 1 24861593 24861593 T C RCAN3 Silent p.Y184Y 0.28 TCGA-XK-AAJA-01 1 3548112 3548112 C T WRAP73 Silent p.P386P 0.35 TCGA-XK-AAJA-01 1 39381357 39381357 A G RHBDL2 Missense_Mutation p.V91A 0.28 deleterious(0.05) benign(0.297) TCGA-XK-AAJA-01 21 42840428 42840428 A C TMPRSS2 Silent p.L440L 0.33 TCGA-XK-AAJA-01 22 19709995 19709995 G A SEPT5 Missense_Mutation p.M366I 0.24 tolerated(0.05) possibly_damaging(0.885) TCGA-XK-AAJA-01 22 31851272 31851272 G C EIF4ENIF1 Missense_Mutation p.Q377E 0.05 tolerated(0.26) probably_damaging(0.981) TCGA-XK-AAJA-01 22 40055483 40055483 G A CACNA1I Silent p.T792T 0.38 TCGA-XK-AAJA-01 2 47639666 47639666 G A MSH2 Missense_Mutation p.M253I 0.23 tolerated(0.19) benign(0.002) TCGA-XK-AAJA-01 3 127965801 127965801 A - EEFSEC Frame_Shift_Del p.I148* 0.22 TCGA-XK-AAJA-01 3 134670606 134670606 T G EPHB1 Missense_Mutation p.F173V 0.05 deleterious(0.01) probably_damaging(1) TCGA-XK-AAJA-01 3 183862680 183862680 G T EIF2B5 Missense_Mutation p.R705S 0.14 tolerated(0.61) benign(0.005) TCGA-XK-AAJA-01 3 183996103 183996103 T C ECE2 Splice_Site p.X368_splice 0.17 TCGA-XK-AAJA-01 3 186917530 186917530 A C RTP1 Missense_Mutation p.D155A 0.15 tolerated(0.06) possibly_damaging(0.475) TCGA-XK-AAJA-01 3 38645555 38645555 C T SCN5A Missense_Mutation p.R513H 0.43 tolerated(0.53) benign(0) TCGA-XK-AAJA-01 4 122602847 122602847 T C ANXA5 Missense_Mutation p.I125V 0.08 tolerated(0.08) benign(0.424) TCGA-XK-AAJA-01 4 166218865 166218865 A G KLHL2 Silent p.E257E 0.06 TCGA-XK-AAJA-01 4 7968660 7968660 G A ABLIM2 3'UTR 0.26 TCGA-XK-AAJA-01 5 140530025 140530025 G A PCDHB6 Missense_Mutation p.A63T 0.22 tolerated(0.06) possibly_damaging(0.489) TCGA-XK-AAJA-01 5 140789302 140789302 C T PCDHGB6 Silent p.S511S 0.17 TCGA-XK-AAJA-01 5 176730101 176730101 G A RAB24 Intron 0.36 TCGA-XK-AAJA-01 6 126319277 126319277 G C TRMT11 Missense_Mutation p.K97N 0.14 tolerated(0.49) benign(0.001) TCGA-XK-AAJA-01 6 126319702 126319702 G A TRMT11 Missense_Mutation p.E132K 0.16 tolerated(0.14) benign(0.008) TCGA-XK-AAJA-01 6 158495667 158495667 G A SYNJ2 Missense_Mutation p.R730H 0.05 deleterious(0) probably_damaging(1) TCGA-XK-AAJA-01 6 26444283 26444283 A G BTN3A3 Missense_Mutation p.T62A 0.17 tolerated(0.82) possibly_damaging(0.519) TCGA-XK-AAJA-01 7 140158862 140158862 C T MKRN1 Missense_Mutation p.C239Y 0.09 deleterious(0) possibly_damaging(0.781) TCGA-XK-AAJA-01 7 56126355 56126355 A G CCT6A Missense_Mutation p.I310V 0.05 tolerated(0.06) benign(0.215) TCGA-XK-AAJA-01 7 92760476 92760476 A G SAMD9L 3'UTR 0.14 TCGA-XK-AAJA-01 8 139661957 139661957 T C COL22A1 Missense_Mutation p.D1133G 0.31 unknown(0) TCGA-XK-AAJA-01 8 2820829 2820829 G A CSMD1 Silent p.C3123C 0.12 TCGA-XK-AAJA-01 8 52336238 52336238 C T PXDNL Silent p.T564T 0.34 TCGA-XK-AAJA-01 8 67755708 67755708 A G SGK3 Missense_Mutation p.R334G 0.07 deleterious(0.01) benign(0.224) TCGA-XK-AAJA-01 X 151560767 151560767 G A GABRA3 Intron 0.57 TCGA-XK-AAJA-01 X 26212007 26212007 G A MAGEB6 Missense_Mutation p.R15H 0.77 tolerated(0.05) possibly_damaging(0.767) TCGA-XK-AAJP-01 10 27702556 27702556 G A PTCHD3 Silent p.F208F 0.31 TCGA-XK-AAJP-01 10 50870746 50870746 G A CHAT Missense_Mutation p.R632Q 0.38 tolerated(0.64) benign(0.02) TCGA-XK-AAJP-01 11 10624677 10624677 G A MRVI1 Missense_Mutation p.A622V 0.69 deleterious(0) probably_damaging(0.999) TCGA-XK-AAJP-01 11 125452260 125452260 C G EI24 Missense_Mutation p.I268M 0.23 deleterious(0.04) possibly_damaging(0.804) TCGA-XK-AAJP-01 12 112451228 112451228 C A ERP29 5'UTR 0.33 TCGA-XK-AAJP-01 12 122958560 122958560 G A ZCCHC8 Silent p.S536S 0.37 TCGA-XK-AAJP-01 12 123286202 123286202 C A CCDC62 Silent p.A503A 0.05 TCGA-XK-AAJP-01 12 47186946 47186946 T G SLC38A4 5'UTR 0.57 TCGA-XK-AAJP-01 12 54974737 54974737 T C PPP1R1A Silent p.G167G 0.37 TCGA-XK-AAJP-01 12 56868873 56868873 T C GLS2 Silent p.T317T 0.23 TCGA-XK-AAJP-01 13 23912044 23912044 C T SACS Missense_Mutation p.V1991I 0.31 probably_damaging(0.987) TCGA-XK-AAJP-01 13 34399991 34399991 A C RFC3 Missense_Mutation p.Q120P 0.25 tolerated(0.31) probably_damaging(0.974) TCGA-XK-AAJP-01 14 19563350 19563350 A - POTEG Intron 0.15 TCGA-XK-AAJP-01 14 22670501 22670501 G T TRAV26-2 Missense_Mutation p.V9L 0.12 tolerated(0.31) benign(0.011) TCGA-XK-AAJP-01 14 35222776 35222776 C T BAZ1A Missense_Mutation p.V1537I 0.38 tolerated_low_confidence(0.29) benign(0.002) TCGA-XK-AAJP-01 14 65471020 65471020 C G FNTB Missense_Mutation p.H66Q 0.32 tolerated(0.68) benign(0.001) TCGA-XK-AAJP-01 15 25958882 25958882 G A ATP10A Silent p.I761I 0.29 TCGA-XK-AAJP-01 15 99251295 99251295 A G IGF1R Missense_Mutation p.E200G 0.36 tolerated(0.12) benign(0.31) TCGA-XK-AAJP-01 16 20856421 20856421 C T AC004381.6 Missense_Mutation p.T661I 0.38 deleterious(0.04) benign(0.211) TCGA-XK-AAJP-01 16 50341044 50341044 C T ADCY7 Silent p.V612V 0.19 TCGA-XK-AAJP-01 17 29151674 29151674 C T CRLF3 5'UTR 0.15 TCGA-XK-AAJP-01 17 4648068 4648068 T C ZMYND15 Missense_Mutation p.V611A 0.46 deleterious(0.04) benign(0.223) TCGA-XK-AAJP-01 17 51900492 51900492 C T KIF2B Missense_Mutation p.A33V 0.42 tolerated(0.16) benign(0.07) TCGA-XK-AAJP-01 18 22804358 22804358 G A ZNF521 Missense_Mutation p.T1175M 0.37 tolerated_low_confidence(0.1) possibly_damaging(0.906) TCGA-XK-AAJP-01 18 7049115 7049115 G A LAMA1 Missense_Mutation p.R244W 0.33 deleterious(0) probably_damaging(0.953) TCGA-XK-AAJP-01 19 10897283 10897283 G A DNM2 Missense_Mutation p.S298N 0.39 tolerated(0.71) benign(0.006) TCGA-XK-AAJP-01 19 32851518 32851518 C T ZNF507 Missense_Mutation p.P785L 0.31 deleterious(0) probably_damaging(0.995) TCGA-XK-AAJP-01 19 39019295 39019295 A G RYR1 Missense_Mutation p.E3665G 0.39 benign(0.001) TCGA-XK-AAJP-01 19 45805762 45805762 C T MARK4 Missense_Mutation p.R685C 0.34 deleterious(0) benign(0.18) TCGA-XK-AAJP-01 19 57646680 57646680 T A ZIM3 Missense_Mutation p.K342M 0.40 deleterious(0) probably_damaging(0.997) TCGA-XK-AAJP-01 1 160314581 160314581 G A NCSTN Missense_Mutation p.R52H 0.64 deleterious(0) probably_damaging(0.995) TCGA-XK-AAJP-01 1 180914413 180914413 T A KIAA1614 Intron 0.39 TCGA-XK-AAJP-01 21 15561724 15561724 G T LIPI Nonsense_Mutation p.C42* 0.24 TCGA-XK-AAJP-01 22 41970869 41970869 G C CSDC2 Missense_Mutation p.E144D 0.33 deleterious(0.04) possibly_damaging(0.804) TCGA-XK-AAJP-01 2 225371708 225371708 A C CUL3 Missense_Mutation p.M299R 0.37 deleterious(0) probably_damaging(0.936) TCGA-XK-AAJP-01 2 89521929 89521929 G T IGKV2-28 5'UTR 0.29 TCGA-XK-AAJP-01 3 141497196 141497196 G A GRK7 Missense_Mutation p.D24N 0.37 tolerated(0.18) possibly_damaging(0.628) TCGA-XK-AAJP-01 3 14509388 14509388 T C SLC6A6 Missense_Mutation p.F299L 0.32 tolerated(0.06) probably_damaging(0.999) TCGA-XK-AAJP-01 3 77651486 77651486 G A ROBO2 Missense_Mutation p.A1010T 0.45 tolerated(0.33) possibly_damaging(0.483) TCGA-XK-AAJP-01 4 16026833 16026833 G A PROM1 Silent p.L204L 0.32 TCGA-XK-AAJP-01 4 185615983 185615983 C A PRIMPOL 3'UTR 0.08 TCGA-XK-AAJP-01 5 41807440 41807440 C A OXCT1 Missense_Mutation p.R278I 0.16 deleterious(0.04) benign(0.338) TCGA-XK-AAJP-01 5 41807484 41807484 C T OXCT1 Silent p.Q263Q 0.21 TCGA-XK-AAJP-01 5 41807525 41807525 C T OXCT1 Missense_Mutation p.D250N 0.22 deleterious(0.04) benign(0.013) TCGA-XK-AAJP-01 6 56341013 56341013 A T DST Silent p.T4643T 0.33 TCGA-XK-AAJP-01 7 103234815 103234815 C T RELN Missense_Mutation p.E1222K 0.43 tolerated(0.21) probably_damaging(0.984) TCGA-XK-AAJP-01 7 63721245 63721245 G A ZNF679 Missense_Mutation p.C67Y 0.45 tolerated(0.15) benign(0.001) TCGA-XK-AAJP-01 7 93108738 93108738 G A CALCR Nonsense_Mutation p.R63* 0.40 TCGA-XK-AAJP-01 8 118533268 118533268 C A MED30 Silent p.I51I 0.61 TCGA-XK-AAJR-01 10 25887055 25887055 C T GPR158 Silent p.L834L 0.05 TCGA-XK-AAJR-01 11 34501742 34501750 ATGAGCTTG - ELF5 3'UTR 0.17 TCGA-XK-AAJR-01 11 82877721 82877722 - A PCF11 Frame_Shift_Ins p.R596Kfs*10 0.13 TCGA-XK-AAJR-01 12 40010812 40010812 A C ABCD2 Silent p.T366T 0.10 TCGA-XK-AAJR-01 12 49444390 49444399 TCAGGGTCAG AC KMT2D Frame_Shift_Del p.T991Sfs*74 0.19 TCGA-XK-AAJR-01 14 25076563 25076563 G C GZMH Missense_Mutation p.P130R 0.12 deleterious(0.02) possibly_damaging(0.906) TCGA-XK-AAJR-01 14 89016642 89016642 G A PTPN21 Silent p.S40S 0.11 TCGA-XK-AAJR-01 15 25330470 25330471 - T SNORD116-18 5'Flank 0.19 TCGA-XK-AAJR-01 15 57910316 57910316 A T MYZAP Missense_Mutation p.Q83L 0.23 deleterious(0.01) benign(0.258) TCGA-XK-AAJR-01 16 72821850 72821850 G - ZFHX3 Frame_Shift_Del p.P3442Qfs*43 0.16 TCGA-XK-AAJR-01 17 10549033 10549033 C T MYH3 Missense_Mutation p.G378S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAJR-01 18 56985545 56985547 CTT TA CPLX4 Frame_Shift_Del p.K50Yfs*3 0.13 TCGA-XK-AAJR-01 19 12864107 12864107 C T BEST2 Silent p.F62F 0.09 TCGA-XK-AAJR-01 19 41387540 41387540 G T CYP2A7 Missense_Mutation p.S99R 0.08 deleterious(0) probably_damaging(1) TCGA-XK-AAJR-01 19 42471428 42471428 T C ATP1A3 Missense_Mutation p.K1009E 0.14 deleterious(0.01) possibly_damaging(0.602) TCGA-XK-AAJR-01 19 53079258 53079258 G A ZNF701 Silent p.R108R 0.07 TCGA-XK-AAJR-01 1 10523512 10523512 C T DFFA Missense_Mutation p.G203S 0.19 deleterious(0.04) benign(0.367) TCGA-XK-AAJR-01 1 11007894 11007894 G - C1orf127 Frame_Shift_Del p.T767Qfs*27 0.15 TCGA-XK-AAJR-01 1 171250040 171250040 C T FMO1 Missense_Mutation p.P248L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-XK-AAJR-01 1 22048218 22048218 C T USP48 Missense_Mutation p.R563H 0.09 deleterious(0.03) possibly_damaging(0.475) TCGA-XK-AAJR-01 22 50488626 50488626 A C TTLL8 Silent p.A70A 0.26 TCGA-XK-AAJR-01 2 197521710 197521710 A G CCDC150 Missense_Mutation p.I142M 0.35 tolerated(0.18) benign(0.184) TCGA-XK-AAJR-01 2 223559867 223559867 A G MOGAT1 Missense_Mutation p.N238S 0.22 tolerated(0.05) possibly_damaging(0.673) TCGA-XK-AAJR-01 2 26705329 26705329 C A OTOF Silent p.V508V 0.04 TCGA-XK-AAJR-01 3 121228543 121228543 C A POLQ Silent p.V608V 0.18 TCGA-XK-AAJR-01 3 193080381 193080381 G T ATP13A5 Missense_Mutation p.L144M 0.16 tolerated(0.22) possibly_damaging(0.472) TCGA-XK-AAJR-01 3 36873537 36873537 T A TRANK1 Nonsense_Mutation p.K2469* 0.30 TCGA-XK-AAJR-01 3 46718435 46718435 G A ALS2CL Missense_Mutation p.A612V 0.14 tolerated(0.07) benign(0.271) TCGA-XK-AAJR-01 3 47663719 47663719 A T SMARCC1 Missense_Mutation p.I920N 0.25 deleterious(0) probably_damaging(0.985) TCGA-XK-AAJR-01 3 48629869 48629869 C T COL7A1 Silent p.Q336Q 0.28 TCGA-XK-AAJR-01 3 52682417 52682417 T G PBRM1 Silent p.I252I 0.07 TCGA-XK-AAJR-01 4 13606319 13606319 C T BOD1L1 Silent p.S735S 0.17 TCGA-XK-AAJR-01 4 3526676 3526676 C T LRPAP1 Missense_Mutation p.E103K 0.13 tolerated(0.34) benign(0.054) TCGA-XK-AAJR-01 4 8467104 8467104 G A TRMT44 Splice_Site p.X437_splice 0.11 TCGA-XK-AAJR-01 5 153056637 153056637 T G GRIA1 Silent p.S325S 0.17 TCGA-XK-AAJR-01 7 76888375 76888375 C T CCDC146 Missense_Mutation p.R250C 0.20 deleterious(0) possibly_damaging(0.886) TCGA-XK-AAJR-01 8 90955507 90955507 C A NBN Nonsense_Mutation p.E720* 0.21 TCGA-XK-AAJR-01 X 77528836 77528836 T G CYSLTR1 Silent p.T136T 0.52 TCGA-XK-AAJT-01 10 38343641 38343641 A G ZNF33A Missense_Mutation p.R197G 0.43 tolerated(0.42) benign(0.001) TCGA-XK-AAJT-01 10 90582589 90582589 C T ANKRD22 3'UTR 0.36 TCGA-XK-AAJT-01 11 134054795 134054797 CAC - NCAPD3 Splice_Site p.X779_splice 0.41 TCGA-XK-AAJT-01 11 62761339 62761339 C T SLC22A8 Missense_Mutation p.V410M 0.05 tolerated(0.06) benign(0.021) TCGA-XK-AAJT-01 12 56334139 56334139 G A DGKA Silent p.G280G 0.33 TCGA-XK-AAJT-01 13 20717018 20717018 C T GJA3 Missense_Mutation p.G137D 0.50 deleterious(0) probably_damaging(0.994) TCGA-XK-AAJT-01 15 34653605 34653605 T A LPCAT4 Missense_Mutation p.Q380L 0.24 tolerated(0.08) benign(0.064) TCGA-XK-AAJT-01 15 56386857 56386857 C T RFX7 Silent p.P1023P 0.30 TCGA-XK-AAJT-01 15 86838595 86838595 C T AGBL1 Missense_Mutation p.T731M 0.39 deleterious(0) probably_damaging(0.996) TCGA-XK-AAJT-01 16 19194989 19194989 C T SYT17 Silent p.F157F 0.06 TCGA-XK-AAJT-01 17 29632323 29632323 A G EVI2B Missense_Mutation p.L102P 0.34 tolerated(0.3) probably_damaging(0.955) TCGA-XK-AAJT-01 17 31355278 31355278 G A ASIC2 Missense_Mutation p.R374C 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-XK-AAJT-01 17 40321507 40321507 G A KCNH4 Silent p.I526I 0.25 TCGA-XK-AAJT-01 19 43233377 43233377 T A PSG3 Missense_Mutation p.I381F 0.08 deleterious(0) probably_damaging(1) TCGA-XK-AAJT-01 1 115829055 115829055 C T NGF Missense_Mutation p.R121Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-XK-AAJT-01 1 147230323 147230323 G A GJA5 Nonsense_Mutation p.R342* 0.29 TCGA-XK-AAJT-01 1 186105941 186105941 G A HMCN1 Missense_Mutation p.R4485Q 0.25 probably_damaging(0.993) TCGA-XK-AAJT-01 1 237947268 237947268 C T RYR2 Missense_Mutation p.R4086C 0.41 probably_damaging(0.999) TCGA-XK-AAJT-01 2 160105008 160105008 C A WDSUB1 Missense_Mutation p.R383L 0.05 deleterious(0) probably_damaging(0.962) TCGA-XK-AAJT-01 2 173451073 173451073 C G PDK1 Missense_Mutation p.T338S 0.24 deleterious(0.04) probably_damaging(0.993) TCGA-XK-AAJT-01 2 29296438 29296438 G A C2orf71 Silent p.S230S 0.29 TCGA-XK-AAJT-01 2 43926922 43926922 C G PLEKHH2 Missense_Mutation p.I275M 0.12 tolerated(0.32) benign(0.001) TCGA-XK-AAJT-01 2 75881964 75881964 C T MRPL19 Missense_Mutation p.A193V 0.06 deleterious(0) probably_damaging(1) TCGA-XK-AAJT-01 3 101284665 101284665 G T TRMT10C Missense_Mutation p.G347V 0.47 deleterious(0) probably_damaging(1) TCGA-XK-AAJT-01 3 52548185 52548185 C T STAB1 Missense_Mutation p.P1168S 0.11 deleterious(0) probably_damaging(1) TCGA-XK-AAJT-01 4 134075498 134075498 G A PCDH10 Missense_Mutation p.D890N 0.26 tolerated(0.61) probably_damaging(0.995) TCGA-XK-AAJT-01 5 160972256 160972256 C T GABRB2 Missense_Mutation p.D72N 0.16 deleterious(0.03) possibly_damaging(0.805) TCGA-XK-AAJT-01 5 162886970 162886970 G A NUDCD2 Silent p.F29F 0.31 TCGA-XK-AAJT-01 6 26184299 26184299 C T HIST1H2BE Silent p.S92S 0.04 TCGA-XK-AAJT-01 6 44084306 44084306 T C MRPL14 Missense_Mutation p.S15G 0.21 tolerated_low_confidence(0.15) benign(0.001) TCGA-XK-AAJT-01 7 30721796 30721796 T C CRHR2 Intron 0.36 TCGA-XK-AAJT-01 8 144992096 144992096 C TAA PLEC Frame_Shift_Ins p.E4102Lfs*20 0.20 TCGA-XK-AAJT-01 8 73979646 73979646 C T SBSPON Missense_Mutation p.G242E 0.56 deleterious(0) probably_damaging(1) TCGA-XK-AAJT-01 9 37842147 37842147 C A DCAF10 Missense_Mutation p.L239M 0.43 tolerated(0.07) probably_damaging(0.996) TCGA-XK-AAJT-01 X 53586378 53586378 G C HUWE1 Missense_Mutation p.R2618G 0.75 benign(0.25) TCGA-XK-AAK1-01 10 50531251 50531251 T A C10orf71 Missense_Mutation p.S221T 0.41 tolerated(0.33) benign(0.093) TCGA-XK-AAK1-01 11 36615350 36615350 G T RAG2 Silent p.R123R 0.30 TCGA-XK-AAK1-01 11 46569885 46569885 G A AMBRA1 Nonsense_Mutation p.R16* 0.62 TCGA-XK-AAK1-01 12 100492187 100492187 T C UHRF1BP1L Silent p.A157A 0.36 TCGA-XK-AAK1-01 12 9997023 9997023 C A KLRF1 Missense_Mutation p.F199L 0.20 tolerated(1) benign(0.001) TCGA-XK-AAK1-01 13 24864978 24864978 G A SPATA13 Silent p.P1012P 0.44 TCGA-XK-AAK1-01 14 23888493 23888493 G A MYH7 Missense_Mutation p.R1289W 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-XK-AAK1-01 14 69262657 69262657 G C ZFP36L1 5'Flank 0.36 TCGA-XK-AAK1-01 15 33945019 33945019 G A RYR3 Missense_Mutation p.V1415M 0.29 possibly_damaging(0.482) TCGA-XK-AAK1-01 15 67768050 67768050 G A IQCH Missense_Mutation p.R898H 0.41 deleterious(0) probably_damaging(0.999) TCGA-XK-AAK1-01 15 78558597 78558597 C T DNAJA4 Intron 0.53 TCGA-XK-AAK1-01 15 91575735 91575735 C T AC068831.10 RNA 0.40 TCGA-XK-AAK1-01 16 67289815 67289815 C T SLC9A5 Missense_Mutation p.S298L 0.45 deleterious(0) probably_damaging(0.999) TCGA-XK-AAK1-01 18 72997682 72997682 C T TSHZ1 Missense_Mutation p.S62L 0.41 tolerated(0.1) benign(0.139) TCGA-XK-AAK1-01 19 11224234 11224234 G A LDLR Missense_Mutation p.G461D 0.40 tolerated(1) benign(0.006) TCGA-XK-AAK1-01 19 14507991 14507991 C T CD97 Missense_Mutation p.P194L 0.37 tolerated(0.29) possibly_damaging(0.896) TCGA-XK-AAK1-01 19 39038896 39038896 G A RYR1 Missense_Mutation p.A4040T 0.25 benign(0) TCGA-XK-AAK1-01 19 9075658 9075658 C T MUC16 Missense_Mutation p.E3930K 0.45 unknown(0) TCGA-XK-AAK1-01 1 110255981 110255981 A C GSTM5 Intron 0.41 TCGA-XK-AAK1-01 1 158057581 158057581 C T KIRREL Missense_Mutation p.T233M 0.55 deleterious(0.01) probably_damaging(0.973) TCGA-XK-AAK1-01 1 186276590 186276592 CCC - PRG4 In_Frame_Del p.P581del 0.11 TCGA-XK-AAK1-01 1 20141239 20141239 C A RNF186 Missense_Mutation p.C119F 0.27 tolerated(0.07) probably_damaging(0.974) TCGA-XK-AAK1-01 1 247614682 247614682 G A OR2B11 Silent p.T201T 0.23 TCGA-XK-AAK1-01 1 248343652 248343652 G A OR2M2 Missense_Mutation p.R122H 0.41 deleterious(0.02) benign(0.028) TCGA-XK-AAK1-01 1 45973975 45973975 T G MMACHC Missense_Mutation p.V123G 0.39 deleterious(0) probably_damaging(0.999) TCGA-XK-AAK1-01 20 25300846 25300846 G A ABHD12 Silent p.N177N 0.11 TCGA-XK-AAK1-01 20 44639815 44639815 C T MMP9 Missense_Mutation p.A228V 0.45 deleterious(0.01) benign(0.179) TCGA-XK-AAK1-01 20 44642001 44642001 C T MMP9 Missense_Mutation p.R480C 0.38 deleterious(0.05) possibly_damaging(0.536) TCGA-XK-AAK1-01 21 43829693 43829693 C T UBASH3A Silent p.H110H 0.40 TCGA-XK-AAK1-01 2 15358960 15358960 G A NBAS Silent p.D2123D 0.42 TCGA-XK-AAK1-01 2 170662037 170662038 - AAACTG SSB In_Frame_Ins p.K41_L42dup 0.47 TCGA-XK-AAK1-01 2 182778588 182778588 T A SSFA2 Silent p.T501T 0.15 TCGA-XK-AAK1-01 2 216198161 216198161 G C ATIC Silent p.A301A 0.32 TCGA-XK-AAK1-01 2 80530137 80530137 A G LRRTM1 Missense_Mutation p.Y270H 0.34 tolerated(0.51) benign(0.027) TCGA-XK-AAK1-01 3 127816297 127816297 C T RUVBL1 Missense_Mutation p.D288N 0.37 tolerated(0.09) benign(0.056) TCGA-XK-AAK1-01 3 134920345 134920345 G T EPHB1 Missense_Mutation p.Q720H 0.04 deleterious(0) probably_damaging(0.989) TCGA-XK-AAK1-01 4 30724481 30724481 C A PCDH7 Missense_Mutation p.D479E 0.53 tolerated_low_confidence(0.62) benign(0.003) TCGA-XK-AAK1-01 5 101585438 101585438 C T SLCO4C1 Silent p.S508S 0.30 TCGA-XK-AAK1-01 5 422959 422959 C T AHRR Missense_Mutation p.P190L 0.28 tolerated(0.2) benign(0.005) TCGA-XK-AAK1-01 6 24463024 24463024 C T GPLD1 Splice_Site p.X274_splice 0.44 TCGA-XK-AAK1-01 6 26199806 26199806 C - HIST1H2BF Frame_Shift_Del p.A8Lfs*12 0.32 TCGA-XK-AAK1-01 6 26217409 26217409 C G HIST1H2AE Missense_Mutation p.N69K 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-XK-AAK1-01 6 85466464 85466464 G A TBX18 Silent p.S241S 0.62 TCGA-XK-AAK1-01 7 106508563 106508563 C T PIK3CG Missense_Mutation p.A186V 0.40 tolerated(0.32) benign(0.009) TCGA-XK-AAK1-01 7 11464354 11464354 A C THSD7A Missense_Mutation p.C1118G 0.43 deleterious(0.03) probably_damaging(0.996) TCGA-XK-AAK1-01 9 130511762 130511762 G A SH2D3C Silent p.S289S 0.49 TCGA-XK-AAK1-01 X 44949155 44949155 G A KDM6A Nonsense_Mutation p.W1239* 0.65 TCGA-XK-AAK1-01 X 48462709 48462709 G A WDR13 Missense_Mutation p.E402K 0.77 tolerated(1) benign(0) TCGA-XQ-A8TA-01 10 115535574 115535574 C A PLEKHS1 Missense_Mutation p.P327H 0.46 tolerated(0.3) benign(0.16) TCGA-XQ-A8TA-01 10 115535575 115535575 T G PLEKHS1 Silent p.P327P 0.47 TCGA-XQ-A8TA-01 10 124050674 124050674 C G BTBD16 Silent p.S185S 0.49 TCGA-XQ-A8TA-01 10 25160954 25160954 G A PRTFDC1 Silent p.G126G 0.45 TCGA-XQ-A8TA-01 10 75391917 75391917 G A MYOZ1 Missense_Mutation p.T224M 0.13 tolerated(0.09) probably_damaging(0.981) TCGA-XQ-A8TA-01 10 98146717 98146717 C T TLL2 Missense_Mutation p.M615I 0.88 deleterious(0.04) benign(0.001) TCGA-XQ-A8TA-01 11 121490558 121490558 G A SORL1 Missense_Mutation p.V1941I 0.27 tolerated(0.06) benign(0.173) TCGA-XQ-A8TA-01 11 124793827 124793827 T G HEPACAM Silent p.S169S 0.62 TCGA-XQ-A8TA-01 11 17793359 17793359 G T KCNC1 Nonsense_Mutation p.E240* 0.82 TCGA-XQ-A8TA-01 11 2482868 2482868 G T KCNQ1 Intron 0.89 TCGA-XQ-A8TA-01 11 298630 298630 C T IFITM5 Silent p.A90A 0.83 TCGA-XQ-A8TA-01 11 55037939 55037939 G T TRIM48 3'UTR 0.46 TCGA-XQ-A8TA-01 11 57095829 57095829 T C SSRP1 Missense_Mutation p.K518R 0.07 tolerated(0.08) benign(0.005) TCGA-XQ-A8TA-01 12 101493355 101493355 G A ANO4 Splice_Site p.X634_splice 0.33 TCGA-XQ-A8TA-01 12 129558643 129558643 T G TMEM132D Missense_Mutation p.D1026A 0.19 tolerated(0.69) benign(0.098) TCGA-XQ-A8TA-01 12 52757020 52757031 TGCCACTCACCT - KRT85 Splice_Site p.X317_splice 0.43 TCGA-XQ-A8TA-01 12 53237983 53237983 G A KRT78 Missense_Mutation p.S314F 0.55 deleterious(0) possibly_damaging(0.815) TCGA-XQ-A8TA-01 12 53676966 53676966 A G ESPL1 Missense_Mutation p.I949V 0.12 tolerated(0.09) possibly_damaging(0.873) TCGA-XQ-A8TA-01 12 58335471 58335471 G T XRCC6BP1 5'UTR 0.45 TCGA-XQ-A8TA-01 13 110814789 110814789 C A COL4A1 Missense_Mutation p.G1417V 0.25 unknown(0) TCGA-XQ-A8TA-01 13 25478177 25478177 C G CENPJ Missense_Mutation p.Q904H 0.33 deleterious(0) possibly_damaging(0.873) TCGA-XQ-A8TA-01 13 52952163 52952163 C T THSD1 Missense_Mutation p.A648T 0.61 tolerated(0.82) benign(0.047) TCGA-XQ-A8TA-01 14 103442111 103442111 C A CDC42BPB Missense_Mutation p.G473C 0.05 tolerated(0.09) possibly_damaging(0.854) TCGA-XQ-A8TA-01 14 35782199 35782199 G C PSMA6 Missense_Mutation p.E174D 0.06 deleterious(0.04) benign(0.03) TCGA-XQ-A8TA-01 14 74206182 74206182 C T ELMSAN1 Missense_Mutation p.R177H 0.39 tolerated_low_confidence(0.15) benign(0.002) TCGA-XQ-A8TA-01 14 76091035 76091035 T G FLVCR2 Missense_Mutation p.L298V 0.45 tolerated(0.62) benign(0.009) TCGA-XQ-A8TA-01 14 94718134 94718134 C A PPP4R4 Missense_Mutation p.T589N 0.32 deleterious(0.02) possibly_damaging(0.878) TCGA-XQ-A8TA-01 15 28437220 28437220 C A HERC2 Missense_Mutation p.D2780Y 0.44 possibly_damaging(0.573) TCGA-XQ-A8TA-01 15 28437221 28437221 C A HERC2 Silent p.L2779L 0.45 TCGA-XQ-A8TA-01 15 51221310 51221310 A C AP4E1 Missense_Mutation p.D216A 0.12 deleterious(0) probably_damaging(1) TCGA-XQ-A8TA-01 15 54025336 54025336 G T WDR72 Missense_Mutation p.S4Y 0.44 deleterious(0.02) possibly_damaging(0.482) TCGA-XQ-A8TA-01 15 75819591 75819591 C T PTPN9 Silent p.Q25Q 0.47 TCGA-XQ-A8TA-01 15 81598853 81598853 G A IL16 Missense_Mutation p.D1258N 0.42 deleterious(0) probably_damaging(0.988) TCGA-XQ-A8TA-01 15 91437015 91437015 G T FES Missense_Mutation p.W726L 0.08 deleterious(0) probably_damaging(1) TCGA-XQ-A8TA-01 16 31234164 31234164 G T TRIM72 Missense_Mutation p.A253S 0.10 tolerated(0.4) benign(0.003) TCGA-XQ-A8TA-01 16 67183601 67183601 G A B3GNT9 Missense_Mutation p.P263L 0.20 deleterious(0) probably_damaging(1) TCGA-XQ-A8TA-01 16 70589037 70589037 G A SF3B3 Silent p.K546K 0.58 TCGA-XQ-A8TA-01 16 71318227 71318227 A C CMTR2 Missense_Mutation p.L533V 0.62 tolerated(0.54) benign(0) TCGA-XQ-A8TA-01 16 90106851 90106851 C G GAS8 Missense_Mutation p.F385L 0.82 tolerated(1) benign(0.001) TCGA-XQ-A8TA-01 17 10446277 10446277 C T MYH2 Silent p.K273K 0.13 TCGA-XQ-A8TA-01 17 37676290 37676290 A G CDK12 Silent p.L1015L 0.77 TCGA-XQ-A8TA-01 17 40765903 40765903 C T TUBG1 Missense_Mutation p.R244C 0.10 deleterious(0) probably_damaging(0.993) TCGA-XQ-A8TA-01 17 41251796 41251796 T G BRCA1 Missense_Mutation p.E181D 0.56 deleterious(0.03) benign(0.009) TCGA-XQ-A8TA-01 17 56247778 56247778 C A OR4D2 Missense_Mutation p.S254R 0.92 deleterious(0) possibly_damaging(0.866) TCGA-XQ-A8TA-01 17 71391322 71391322 C G SDK2 Missense_Mutation p.Q1188H 0.27 tolerated(0.08) benign(0.003) TCGA-XQ-A8TA-01 17 73829083 73829083 T C UNC13D Missense_Mutation p.Y804C 0.70 deleterious(0) probably_damaging(0.998) TCGA-XQ-A8TA-01 17 9676168 9676168 C T DHRS7C Missense_Mutation p.V216I 0.89 tolerated(0.19) benign(0.002) TCGA-XQ-A8TA-01 18 71797865 71797865 C A FBXO15 Missense_Mutation p.A121S 0.16 tolerated(0.43) benign(0.11) TCGA-XQ-A8TA-01 19 18273222 18273222 G T PIK3R2 Nonsense_Mutation p.E339* 0.41 TCGA-XQ-A8TA-01 19 2877442 2877442 G A ZNF556 Silent p.L162L 0.42 TCGA-XQ-A8TA-01 19 46184863 46184863 G T GIPR Missense_Mutation p.G385V 0.17 deleterious(0) probably_damaging(1) TCGA-XQ-A8TA-01 19 47593282 47593282 G T ZC3H4 Missense_Mutation p.D219E 0.41 probably_damaging(0.978) TCGA-XQ-A8TA-01 19 7812334 7812334 G A CD209 Intron 0.51 TCGA-XQ-A8TA-01 1 117695923 117695923 G A VTCN1 Nonsense_Mutation p.R172* 0.31 TCGA-XQ-A8TA-01 1 153902804 153902804 C G DENND4B Missense_Mutation p.R1487P 0.47 deleterious(0) probably_damaging(0.995) TCGA-XQ-A8TA-01 1 169762232 169762232 C G METTL18 Missense_Mutation p.G202A 0.42 deleterious(0) probably_damaging(0.994) TCGA-XQ-A8TA-01 1 171173103 171173103 C T FMO2 Missense_Mutation p.L243F 0.48 tolerated(0.17) probably_damaging(0.979) TCGA-XQ-A8TA-01 1 173556924 173556924 T A SLC9C2 Missense_Mutation p.I135F 0.06 deleterious(0) possibly_damaging(0.746) TCGA-XQ-A8TA-01 1 176564355 176564355 A T PAPPA2 Missense_Mutation p.N539Y 0.42 tolerated(0.29) benign(0.002) TCGA-XQ-A8TA-01 1 228412361 228412361 C G OBSCN Missense_Mutation p.A1044G 0.48 possibly_damaging(0.901) TCGA-XQ-A8TA-01 1 228462108 228462108 C A OBSCN Missense_Mutation p.S2257R 0.35 probably_damaging(0.911) TCGA-XQ-A8TA-01 1 228462109 228462109 C G OBSCN Missense_Mutation p.R2258G 0.36 probably_damaging(0.988) TCGA-XQ-A8TA-01 1 229738306 229738306 T C TAF5L Missense_Mutation p.K203R 0.41 tolerated(0.54) benign(0.002) TCGA-XQ-A8TA-01 1 27874315 27874315 C G AHDC1 Missense_Mutation p.A1438P 0.13 tolerated_low_confidence(0.1) possibly_damaging(0.82) TCGA-XQ-A8TA-01 1 41512096 41512096 T C SCMH1 Missense_Mutation p.H484R 0.38 tolerated(0.53) benign(0.002) TCGA-XQ-A8TA-01 20 29612011 29612011 C T FRG1B 5'UTR 0.33 TCGA-XQ-A8TA-01 20 33509154 33509154 G T ACSS2 Missense_Mutation p.Q446H 0.09 deleterious(0) possibly_damaging(0.722) TCGA-XQ-A8TA-01 20 34099346 34099346 T A CEP250 Missense_Mutation p.L2407Q 0.06 probably_damaging(1) TCGA-XQ-A8TA-01 20 50140068 50140068 C T NFATC2 Missense_Mutation p.V238M 0.33 tolerated(0.19) possibly_damaging(0.514) TCGA-XQ-A8TA-01 20 9416222 9416222 T G PLCB4 Nonsense_Mutation p.L835* 0.34 TCGA-XQ-A8TA-01 22 50500057 50500057 G A MLC1 Silent p.D363D 0.52 TCGA-XQ-A8TA-01 2 100623893 100623893 C G AFF3 Silent p.R93R 0.36 TCGA-XQ-A8TA-01 2 114709088 114709088 A T ACTR3 Silent p.S297S 0.44 TCGA-XQ-A8TA-01 2 118864346 118864346 C G INSIG2 Missense_Mutation p.L135V 0.33 tolerated(0.14) probably_damaging(0.998) TCGA-XQ-A8TA-01 2 179426672 179426672 G C TTN Missense_Mutation p.R28063G 0.19 TCGA-XQ-A8TA-01 2 207170014 207170014 T A ZDBF2 Missense_Mutation p.H254Q 0.24 deleterious(0.02) benign(0) TCGA-XQ-A8TA-01 2 210894539 210894539 C G KANSL1L Missense_Mutation p.Q753H 0.26 tolerated(0.07) possibly_damaging(0.882) TCGA-XQ-A8TA-01 2 219540981 219540981 A G STK36 Missense_Mutation p.T222A 0.37 tolerated(0.6) benign(0.005) TCGA-XQ-A8TA-01 2 220136477 220136480 TGTG - TUBA4B RNA 0.19 TCGA-XQ-A8TA-01 2 228102830 228102830 C A COL4A3 Intron 0.47 TCGA-XQ-A8TA-01 2 238266526 238266526 C A COL6A3 Splice_Site p.X2158_splice 0.91 TCGA-XQ-A8TA-01 2 54028677 54028677 T G ERLEC1 Missense_Mutation p.I223M 0.44 deleterious(0) probably_damaging(0.985) TCGA-XQ-A8TA-01 2 89265996 89265996 G A IGKV1-6 Missense_Mutation p.R46W 0.42 deleterious(0.04) benign(0.045) TCGA-XQ-A8TA-01 3 10188250 10188250 C G VHL Missense_Mutation p.N131K 0.09 deleterious(0) probably_damaging(0.999) TCGA-XQ-A8TA-01 3 126915864 126915864 C T C3orf56 Silent p.D112D 0.17 TCGA-XQ-A8TA-01 3 151012739 151012739 C G GPR87 Missense_Mutation p.V99L 0.16 tolerated(1) benign(0.032) TCGA-XQ-A8TA-01 3 160243734 160243734 T C KPNA4 Missense_Mutation p.I240V 0.52 tolerated(1) benign(0.019) TCGA-XQ-A8TA-01 3 170218900 170218900 A C SLC7A14 Missense_Mutation p.L180R 0.35 tolerated(0.07) possibly_damaging(0.664) TCGA-XQ-A8TA-01 3 195800839 195800839 C T TFRC Silent p.S132S 0.39 TCGA-XQ-A8TA-01 3 24006646 24006646 C A NR1D2 Missense_Mutation p.T442N 0.05 deleterious(0) possibly_damaging(0.817) TCGA-XQ-A8TA-01 3 32932438 32932438 A T TRIM71 Missense_Mutation p.K581M 0.53 deleterious(0) possibly_damaging(0.864) TCGA-XQ-A8TA-01 3 38936400 38936400 T C SCN11A Missense_Mutation p.N820S 0.08 tolerated(0.77) benign(0.055) TCGA-XQ-A8TA-01 3 42906763 42906763 G C ACKR2 Missense_Mutation p.V257L 0.39 tolerated(0.44) benign(0.032) TCGA-XQ-A8TA-01 3 46244792 46244792 C G CCR1 Missense_Mutation p.R338T 0.59 tolerated(0.09) possibly_damaging(0.758) TCGA-XQ-A8TA-01 3 52598071 52598071 G A PBRM1 Silent p.Y1265Y 0.46 TCGA-XQ-A8TA-01 3 52815957 52815957 G T ITIH1 Missense_Mutation p.G230V 0.07 deleterious(0.01) probably_damaging(1) TCGA-XQ-A8TA-01 3 98216556 98216556 A T OR5K2 Missense_Mutation p.E11V 0.48 deleterious(0.01) benign(0.094) TCGA-XQ-A8TA-01 4 115997694 115997694 C T NDST4 Missense_Mutation p.A167T 0.47 tolerated(0.23) benign(0.301) TCGA-XQ-A8TA-01 4 13604756 13604756 C T BOD1L1 Silent p.L1256L 0.39 TCGA-XQ-A8TA-01 4 164272284 164272284 A C NPY5R Silent p.R287R 0.49 TCGA-XQ-A8TA-01 4 57676299 57676299 G A SPINK2 3'UTR 0.37 TCGA-XQ-A8TA-01 4 80954651 80954651 G T ANTXR2 Nonsense_Mutation p.Y257* 0.63 TCGA-XQ-A8TA-01 4 81123131 81123131 C T PRDM8 Missense_Mutation p.A172V 0.45 deleterious(0) probably_damaging(0.939) TCGA-XQ-A8TA-01 4 82355073 82355073 C G RASGEF1B Missense_Mutation p.W415C 0.05 deleterious(0) benign(0.334) TCGA-XQ-A8TA-01 4 90816530 90816530 T C MMRN1 Silent p.N136N 0.42 TCGA-XQ-A8TA-01 5 112175856 112175856 T G APC Nonsense_Mutation p.L1522* 0.47 TCGA-XQ-A8TA-01 5 139232605 139232605 G A NRG2 Missense_Mutation p.R434W 0.96 deleterious(0) probably_damaging(1) TCGA-XQ-A8TA-01 5 140579581 140579581 C G PCDHB11 Missense_Mutation p.D78E 0.53 tolerated_low_confidence(0.07) benign(0.219) TCGA-XQ-A8TA-01 5 168175430 168175430 T A SLIT3 Missense_Mutation p.E716V 0.21 deleterious(0.03) benign(0.004) TCGA-XQ-A8TA-01 5 78251233 78251233 C G ARSB Missense_Mutation p.K261N 0.82 tolerated(0.43) benign(0.034) TCGA-XQ-A8TA-01 5 914586 914586 A G TRIP13 Missense_Mutation p.I343V 0.03 tolerated(0.16) benign(0.034) TCGA-XQ-A8TA-01 6 136693640 136693640 G A MAP7 Missense_Mutation p.A314V 0.67 tolerated(0.34) benign(0.079) TCGA-XQ-A8TA-01 6 24601303 24601303 G T KIAA0319 Nonsense_Mutation p.S10* 0.06 TCGA-XQ-A8TA-01 6 31831390 31831390 C G SLC44A4 3'UTR 0.28 TCGA-XQ-A8TA-01 6 37336452 37336453 - A RNF8 Frame_Shift_Ins p.N147Kfs*2 0.49 TCGA-XQ-A8TA-01 6 47251781 47251781 T A TNFRSF21 Missense_Mutation p.K379M 0.48 deleterious(0) probably_damaging(0.992) TCGA-XQ-A8TA-01 6 56467779 56467779 G C DST Intron 0.05 TCGA-XQ-A8TA-01 6 69349172 69349172 T C BAI3 Missense_Mutation p.L202S 0.41 tolerated(0.83) probably_damaging(0.979) TCGA-XQ-A8TA-01 7 100075364 100075364 G C TSC22D4 Missense_Mutation p.L100V 0.44 tolerated(0.45) probably_damaging(0.972) TCGA-XQ-A8TA-01 7 100679631 100679631 G C MUC17 Missense_Mutation p.S1645T 0.53 probably_damaging(0.958) TCGA-XQ-A8TA-01 7 116409761 116409761 T G MET Missense_Mutation p.C900W 0.61 deleterious(0) probably_damaging(0.997) TCGA-XQ-A8TA-01 7 121753718 121753718 G T AASS Missense_Mutation p.T367N 0.14 tolerated(0.82) benign(0.029) TCGA-XQ-A8TA-01 7 128312528 128312528 T G FAM71F2 Missense_Mutation p.L26R 0.38 deleterious(0.03) probably_damaging(0.99) TCGA-XQ-A8TA-01 7 128312529 128312529 T C FAM71F2 Silent p.L26L 0.38 TCGA-XQ-A8TA-01 7 137308251 137308251 C A DGKI Missense_Mutation p.S285I 0.41 deleterious(0) probably_damaging(0.999) TCGA-XQ-A8TA-01 7 141762491 141762491 G T MGAM Missense_Mutation p.G1416C 0.26 deleterious(0) probably_damaging(0.999) TCGA-XQ-A8TA-01 7 142583149 142583149 A C TRPV6 Missense_Mutation p.L38R 0.44 tolerated(0.07) benign(0.103) TCGA-XQ-A8TA-01 7 43495935 43495935 A T HECW1 Missense_Mutation p.Y847F 0.47 tolerated(0.09) probably_damaging(0.972) TCGA-XQ-A8TA-01 8 113960064 113960064 T A CSMD3 Missense_Mutation p.D488V 0.29 deleterious(0) possibly_damaging(0.643) TCGA-XQ-A8TA-01 8 126049568 126049568 A T KIAA0196 Missense_Mutation p.I1031K 0.35 deleterious(0) benign(0.384) TCGA-XQ-A8TA-01 8 134233084 134233084 G T WISP1 Missense_Mutation p.D204Y 0.29 deleterious(0.04) benign(0.179) TCGA-XQ-A8TA-01 8 41559078 41559078 C A ANK1 Silent p.S850S 0.93 TCGA-XQ-A8TA-01 9 114199253 114199253 A G KIAA0368 Silent p.G403G 0.25 TCGA-XQ-A8TA-01 9 116079080 116079080 G C WDR31 Silent p.L351L 0.60 TCGA-XQ-A8TA-01 9 140846798 140846798 A G CACNA1B Missense_Mutation p.M347V 0.07 tolerated(0.39) benign(0.026) TCGA-XQ-A8TA-01 9 35092294 35092294 C G PIGO Missense_Mutation p.W530C 0.46 deleterious(0.03) possibly_damaging(0.839) TCGA-XQ-A8TA-01 9 38396792 38396792 G A ALDH1B1 Silent p.G349G 0.44 TCGA-XQ-A8TA-01 X 128894500 128894500 C T XPNPEP2 Missense_Mutation p.R481C 0.45 deleterious(0.03) probably_damaging(0.999) TCGA-XQ-A8TA-01 X 129200819 129200819 G A ELF4 Silent p.S623S 0.20 TCGA-XQ-A8TA-01 X 135309468 135309468 T A MAP7D3 Missense_Mutation p.Q670L 0.41 deleterious(0.03) probably_damaging(0.935) TCGA-XQ-A8TA-01 X 153130077 153130077 G C L1CAM Missense_Mutation p.C1043W 0.42 deleterious(0.03) possibly_damaging(0.874) TCGA-XQ-A8TA-01 X 67731784 67731784 A T YIPF6 Missense_Mutation p.S51C 0.96 tolerated(0.13) benign(0.155) TCGA-XQ-A8TB-01 10 102120727 102120727 C T SCD 3'UTR 0.30 TCGA-XQ-A8TB-01 10 105201643 105201643 A - PDCD11 Frame_Shift_Del p.N1540Mfs*4 0.27 TCGA-XQ-A8TB-01 10 94454307 94454307 A C HHEX Missense_Mutation p.N199H 0.42 tolerated(0.07) possibly_damaging(0.862) TCGA-XQ-A8TB-01 10 94454330 94454330 A C HHEX Missense_Mutation p.E206D 0.40 tolerated(0.17) benign(0.001) TCGA-XQ-A8TB-01 10 94454417 94454417 A C HHEX Missense_Mutation p.Q235H 0.37 tolerated(0.14) benign(0.003) TCGA-XQ-A8TB-01 10 99661288 99661288 G A CRTAC1 Missense_Mutation p.R369C 0.50 deleterious(0.01) possibly_damaging(0.794) TCGA-XQ-A8TB-01 11 5410912 5410912 G A OR51M1 Missense_Mutation p.G95E 0.30 deleterious(0.02) possibly_damaging(0.718) TCGA-XQ-A8TB-01 11 6292291 6292291 G A CCKBR Missense_Mutation p.E288K 0.04 tolerated(0.19) benign(0.103) TCGA-XQ-A8TB-01 11 63672332 63672332 G A MARK2 Missense_Mutation p.R584Q 0.36 tolerated(0.07) possibly_damaging(0.644) TCGA-XQ-A8TB-01 12 117657907 117657907 G A NOS1 Silent p.D1415D 0.28 TCGA-XQ-A8TB-01 12 119563255 119563255 G A SRRM4 Silent p.S195S 0.29 TCGA-XQ-A8TB-01 14 102027947 102027947 C T DIO3 Silent p.L38L 0.28 TCGA-XQ-A8TB-01 14 65417801 65417801 G A RAB15 Silent p.D105D 0.09 TCGA-XQ-A8TB-01 17 27062354 27062354 G A NEK8 Missense_Mutation p.E195K 0.30 deleterious(0) probably_damaging(1) TCGA-XQ-A8TB-01 17 73751927 73751927 C T ITGB4 Silent p.N1568N 0.17 TCGA-XQ-A8TB-01 19 36381296 36381296 G A NFKBID Missense_Mutation p.R235W 0.15 deleterious(0.03) possibly_damaging(0.906) TCGA-XQ-A8TB-01 19 57326531 57326531 G A PEG3 Silent p.D1093D 0.43 TCGA-XQ-A8TB-01 1 157062700 157062700 C T ETV3L Missense_Mutation p.S276N 0.35 tolerated(0.08) benign(0.034) TCGA-XQ-A8TB-01 1 32375675 32375675 C T PTP4A2 Missense_Mutation p.G120E 0.48 deleterious(0) probably_damaging(0.966) TCGA-XQ-A8TB-01 20 40049644 40049655 GTTTTCCTCCTC - CHD6 In_Frame_Del p.E1874_N1877del 0.25 TCGA-XQ-A8TB-01 22 18389469 18389477 TCACAGAGC - MICAL3 In_Frame_Del p.E34_C36del 0.11 TCGA-XQ-A8TB-01 22 41969756 41969756 G A CSDC2 Missense_Mutation p.E92K 0.32 tolerated(0.24) possibly_damaging(0.508) TCGA-XQ-A8TB-01 2 216269132 216269132 G A FN1 Missense_Mutation p.A1078V 0.06 tolerated(1) benign(0.004) TCGA-XQ-A8TB-01 2 238243351 238243351 G A COL6A3 Silent p.L3049L 0.18 TCGA-XQ-A8TB-01 2 46985998 46985998 G A SOCS5 Missense_Mutation p.R110Q 0.32 tolerated(0.06) benign(0.002) TCGA-XQ-A8TB-01 2 80529581 80529581 G A LRRTM1 Missense_Mutation p.A455V 0.42 tolerated(0.08) probably_damaging(0.978) TCGA-XQ-A8TB-01 2 98844716 98844716 C A VWA3B Missense_Mutation p.L691M 0.28 deleterious(0) probably_damaging(1) TCGA-XQ-A8TB-01 4 5564760 5564760 G A EVC2 Missense_Mutation p.P1248S 0.06 tolerated(0.49) benign(0.026) TCGA-XQ-A8TB-01 4 74735480 74735480 C T CXCL1 Silent p.P65P 0.33 TCGA-XQ-A8TB-01 5 168093667 168093667 C T SLIT3 Missense_Mutation p.R1455Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-XQ-A8TB-01 6 16328576 16328576 C T ATXN1 5'UTR 0.27 TCGA-XQ-A8TB-01 6 63991021 63991021 G A LGSN Silent p.S145S 0.24 TCGA-XQ-A8TB-01 7 5353440 5353440 G A TNRC18 Missense_Mutation p.P2361L 0.34 possibly_damaging(0.713) TCGA-XQ-A8TB-01 8 28304692 28304692 G A FBXO16 Missense_Mutation p.S280L 0.29 deleterious(0.01) benign(0.365) TCGA-XQ-A8TB-01 8 28692856 28692856 C A INTS9 Silent p.V147V 0.07 TCGA-XQ-A8TB-01 8 98712028 98712028 G T MTDH Missense_Mutation p.Q365H 0.37 deleterious(0) probably_damaging(0.999) TCGA-Y6-A8TL-01 10 48429072 48429072 C T GDF10 Missense_Mutation p.G272R 0.30 deleterious(0) possibly_damaging(0.587) TCGA-Y6-A8TL-01 11 6636110 6636111 - C TPP1 Frame_Shift_Ins p.A513Gfs*5 0.25 TCGA-Y6-A8TL-01 12 120966916 120966916 C T COQ5 Nonsense_Mutation p.W10* 0.17 TCGA-Y6-A8TL-01 12 53201525 53201525 G A KRT4 Nonsense_Mutation p.R417* 0.38 TCGA-Y6-A8TL-01 12 89885713 89885713 T G POC1B Missense_Mutation p.K151T 0.15 deleterious(0) probably_damaging(0.961) TCGA-Y6-A8TL-01 13 37567800 37567800 G A ALG5 Missense_Mutation p.P99S 0.05 tolerated(0.38) benign(0.023) TCGA-Y6-A8TL-01 14 105416235 105416235 C T AHNAK2 Silent p.P1851P 0.26 TCGA-Y6-A8TL-01 14 21955847 21955847 A G TOX4 Missense_Mutation p.T105A 0.26 tolerated(1) benign(0) TCGA-Y6-A8TL-01 15 44630467 44630467 C T CASC4 Missense_Mutation p.P252S 0.09 deleterious(0) probably_damaging(1) TCGA-Y6-A8TL-01 15 69011503 69011503 C G CORO2B Missense_Mutation p.D367E 0.08 deleterious(0) probably_damaging(0.999) TCGA-Y6-A8TL-01 16 29825109 29825109 G A PRRT2 Missense_Mutation p.R245H 0.17 deleterious(0.01) probably_damaging(1) TCGA-Y6-A8TL-01 17 11958264 11958264 G C MAP2K4 Missense_Mutation p.R58S 0.09 deleterious(0.01) benign(0.169) TCGA-Y6-A8TL-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-Y6-A8TL-01 17 56620409 56620409 G - C17orf47 Frame_Shift_Del p.P380Qfs*29 0.13 TCGA-Y6-A8TL-01 17 7804250 7804250 A G CHD3 Missense_Mutation p.N1079S 0.34 possibly_damaging(0.621) TCGA-Y6-A8TL-01 19 12760801 12760801 G C MAN2B1 Missense_Mutation p.S731R 0.03 deleterious(0) probably_damaging(0.997) TCGA-Y6-A8TL-01 19 32844700 32844700 G A ZNF507 Missense_Mutation p.V322M 0.17 tolerated(0.06) benign(0.11) TCGA-Y6-A8TL-01 1 114438637 114438637 G A AP4B1 Missense_Mutation p.R512W 0.12 deleterious(0) probably_damaging(1) TCGA-Y6-A8TL-01 1 196928040 196928040 G T CFHR2 Nonsense_Mutation p.E215* 0.16 TCGA-Y6-A8TL-01 2 27280260 27280260 C G AGBL5 Missense_Mutation p.P542R 0.25 tolerated(0.05) probably_damaging(0.968) TCGA-Y6-A8TL-01 2 86354404 86354404 C A PTCD3 Missense_Mutation p.R358S 0.30 tolerated(0.49) benign(0.03) TCGA-Y6-A8TL-01 3 179280917 179280917 C T ACTL6A Intron 0.13 TCGA-Y6-A8TL-01 4 155490938 155490938 G T FGB Missense_Mutation p.D411Y 0.19 deleterious(0) probably_damaging(1) TCGA-Y6-A8TL-01 5 31317789 31317789 C T CDH6 Missense_Mutation p.A547V 0.09 deleterious(0.02) possibly_damaging(0.666) TCGA-Y6-A8TL-01 5 71492635 71492635 G A MAP1B Silent p.E1151E 0.10 TCGA-Y6-A8TL-01 6 36993603 36993603 A G FGD2 Silent p.E498E 0.10 TCGA-Y6-A8TL-01 7 142028343 142028343 C T TRBV6-1 Missense_Mutation p.T26I 0.20 deleterious(0.05) benign(0.051) TCGA-Y6-A8TL-01 7 28452449 28452449 A G CREB5 5'UTR 0.26 TCGA-Y6-A8TL-01 8 1728426 1728426 C G CLN8 Missense_Mutation p.S185C 0.18 deleterious(0.05) possibly_damaging(0.9) TCGA-Y6-A8TL-01 8 24211946 24211946 A T ADAM28 3'UTR 0.34 TCGA-Y6-A8TL-01 8 25340925 25340925 A T CDCA2 Missense_Mutation p.N348I 0.33 deleterious(0) benign(0.397) TCGA-Y6-A8TL-01 8 2886875 2886875 C T CSMD1 Silent p.T2607T 0.20 TCGA-Y6-A8TL-01 8 90965618 90965618 A G NBN Missense_Mutation p.F567L 0.11 tolerated(0.25) benign(0.007) TCGA-Y6-A8TL-01 9 111714527 111714527 G C CTNNAL1 Missense_Mutation p.N599K 0.31 deleterious(0.05) benign(0.232) TCGA-Y6-A9XI-01 10 55826543 55826543 C A PCDH15 Missense_Mutation p.A732S 0.23 tolerated(0.11) benign(0.1) TCGA-Y6-A9XI-01 10 75567489 75567489 C T NDST2 Missense_Mutation p.G220R 0.50 deleterious(0.01) probably_damaging(1) TCGA-Y6-A9XI-01 10 91177745 91177745 T A IFIT5 Missense_Mutation p.N263K 0.15 deleterious(0.05) benign(0.015) TCGA-Y6-A9XI-01 11 20652328 20652328 C T SLC6A5 Missense_Mutation p.R531C 0.12 deleterious(0.02) benign(0.308) TCGA-Y6-A9XI-01 11 55111638 55111638 G A OR4A16 Missense_Mutation p.S321N 0.52 tolerated_low_confidence(1) benign(0.001) TCGA-Y6-A9XI-01 11 66478213 66478213 G A SPTBN2 Missense_Mutation p.R305C 0.08 deleterious(0.01) possibly_damaging(0.877) TCGA-Y6-A9XI-01 11 93469412 93469412 T G TAF1D Missense_Mutation p.E251A 0.36 deleterious_low_confidence(0.02) benign(0.072) TCGA-Y6-A9XI-01 12 120960123 120960123 C T COQ5 Missense_Mutation p.M82I 0.06 deleterious(0) probably_damaging(1) TCGA-Y6-A9XI-01 12 21919255 21919255 C T KCNJ8 Missense_Mutation p.R226H 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-Y6-A9XI-01 12 66698594 66698594 G C HELB Missense_Mutation p.V91L 0.15 tolerated(0.07) benign(0.224) TCGA-Y6-A9XI-01 12 75893616 75893616 A C KRR1 Missense_Mutation p.D373E 0.37 tolerated_low_confidence(0.16) benign(0.16) TCGA-Y6-A9XI-01 14 105408302 105408302 C T AHNAK2 Missense_Mutation p.D4496N 0.07 possibly_damaging(0.786) TCGA-Y6-A9XI-01 14 106237046 106237046 G A IGHG3 Silent p.T102T 0.48 TCGA-Y6-A9XI-01 14 106641640 106641640 C T IGHV1-18 Missense_Mutation p.D92N 0.32 deleterious(0.02) benign(0.433) TCGA-Y6-A9XI-01 14 25043995 25043995 G A CTSG Silent p.G75G 0.09 TCGA-Y6-A9XI-01 14 75329862 75329862 G A PROX2 Silent p.L226L 0.36 TCGA-Y6-A9XI-01 14 94173180 94173180 G A UNC79 Missense_Mutation p.C2436Y 0.15 tolerated(0.06) probably_damaging(0.998) TCGA-Y6-A9XI-01 15 88678541 88678541 G A NTRK3 Missense_Mutation p.T332M 0.38 deleterious(0.01) possibly_damaging(0.729) TCGA-Y6-A9XI-01 16 76555114 76555114 G A CNTNAP4 Missense_Mutation p.A742T 0.28 tolerated(0.05) possibly_damaging(0.465) TCGA-Y6-A9XI-01 17 47583677 47583677 C T NGFR Silent p.D75D 0.09 TCGA-Y6-A9XI-01 17 4800595 4800595 C T MINK1 3'UTR 0.16 TCGA-Y6-A9XI-01 19 50138860 50138860 G T RRAS Silent p.G210G 0.24 TCGA-Y6-A9XI-01 1 152192359 152192359 A T HRNR Silent p.S582S 0.11 TCGA-Y6-A9XI-01 1 152777704 152777704 C G LCE1C Missense_Mutation p.R84T 0.15 deleterious_low_confidence(0) unknown(0) TCGA-Y6-A9XI-01 1 157105362 157105362 C G ETV3 Missense_Mutation p.G62A 0.26 deleterious(0) probably_damaging(1) TCGA-Y6-A9XI-01 1 158608031 158608031 C A SPTA1 Missense_Mutation p.D1661Y 0.17 deleterious(0) probably_damaging(0.981) TCGA-Y6-A9XI-01 1 158632713 158632713 T C SPTA1 Missense_Mutation p.D748G 0.31 tolerated(0.38) possibly_damaging(0.513) TCGA-Y6-A9XI-01 1 158669493 158669493 G A OR6K2 Missense_Mutation p.P317L 0.35 tolerated(0.46) benign(0.001) TCGA-Y6-A9XI-01 1 169391324 169391324 C A CCDC181 Missense_Mutation p.L115F 0.11 deleterious(0.01) possibly_damaging(0.865) TCGA-Y6-A9XI-01 1 198725090 198725090 G A PTPRC Missense_Mutation p.G1234E 0.35 deleterious(0) probably_damaging(1) TCGA-Y6-A9XI-01 1 198725382 198725382 G C PTPRC 3'UTR 0.36 TCGA-Y6-A9XI-01 1 240070781 240070781 G A CHRM3 Silent p.S10S 0.06 TCGA-Y6-A9XI-01 1 35824942 35824943 GG A ZMYM4 Frame_Shift_Del p.G168Kfs*8 0.26 TCGA-Y6-A9XI-01 20 49626483 49626483 C T KCNG1 Silent p.L131L 0.40 TCGA-Y6-A9XI-01 21 30953765 30953765 A G GRIK1 Missense_Mutation p.V631A 0.09 deleterious(0.01) possibly_damaging(0.6) TCGA-Y6-A9XI-01 21 34640775 34640775 A G AP000295.9 Silent p.S170S 0.09 TCGA-Y6-A9XI-01 2 112542986 112542986 T G ANAPC1 Missense_Mutation p.D1623A 0.25 deleterious(0) benign(0.195) TCGA-Y6-A9XI-01 2 136623784 136623784 C T MCM6 Missense_Mutation p.R282Q 0.13 tolerated(0.43) benign(0.024) TCGA-Y6-A9XI-01 2 1488493 1488493 C T TPO Silent p.A488A 0.29 TCGA-Y6-A9XI-01 2 215866294 215866294 C T ABCA12 Missense_Mutation p.E951K 0.05 tolerated(0.09) benign(0.392) TCGA-Y6-A9XI-01 2 237150049 237150049 C T ASB18 Intron 0.34 TCGA-Y6-A9XI-01 2 42522547 42522547 G T EML4 Missense_Mutation p.Q460H 0.14 deleterious(0.05) benign(0.214) TCGA-Y6-A9XI-01 3 186394861 186394861 C T HRG Missense_Mutation p.P256L 0.34 tolerated(0.3) possibly_damaging(0.726) TCGA-Y6-A9XI-01 3 56330243 56330243 G A ERC2 Missense_Mutation p.T293M 0.05 deleterious(0) probably_damaging(0.997) TCGA-Y6-A9XI-01 4 1377682 1377682 C T UVSSA Nonsense_Mutation p.Q664* 0.11 TCGA-Y6-A9XI-01 5 16671017 16671017 C A MYO10 Missense_Mutation p.R1834L 0.21 tolerated(0.07) probably_damaging(0.997) TCGA-Y6-A9XI-01 5 52394453 52394453 G A MOCS2 Silent p.C182C 0.16 TCGA-Y6-A9XI-01 6 30632730 30632730 T C DHX16 Missense_Mutation p.K389E 0.41 tolerated(0.27) unknown(0) TCGA-Y6-A9XI-01 6 5545497 5545497 G A FARS2 Missense_Mutation p.R330H 0.33 deleterious(0) probably_damaging(1) TCGA-Y6-A9XI-01 7 149497093 149497093 G C SSPO Splice_Site 0.20 TCGA-Y6-A9XI-01 7 2752464 2752464 C T AMZ1 Silent p.L483L 0.20 TCGA-Y6-A9XI-01 7 82785391 82785391 G A PCLO Missense_Mutation p.T189I 0.12 unknown(0) TCGA-Y6-A9XI-01 9 103066107 103066108 - C TEX10 Frame_Shift_Ins p.V828Gfs*28 0.18 TCGA-Y6-A9XI-01 9 85924472 85924472 A G FRMD3 Missense_Mutation p.V302A 0.25 deleterious(0) probably_damaging(0.994) TCGA-Y6-A9XI-01 9 95888798 95888798 G A NINJ1 Silent p.A66A 0.10 TCGA-YJ-A8SW-01 10 22634710 22634710 G A SPAG6 Silent p.A28A 0.21 TCGA-YJ-A8SW-01 11 126075477 126075477 C T RPUSD4 Missense_Mutation p.D228N 0.20 tolerated(0.54) benign(0.001) TCGA-YJ-A8SW-01 11 132305999 132305999 A T OPCML Missense_Mutation p.N306K 0.44 deleterious(0) probably_damaging(0.997) TCGA-YJ-A8SW-01 11 373292 373292 G C B4GALNT4 Splice_Site p.X212_splice 0.33 TCGA-YJ-A8SW-01 11 379668 379668 C T B4GALNT4 Missense_Mutation p.R819C 0.20 deleterious(0) unknown(0) TCGA-YJ-A8SW-01 11 5718478 5718478 G A TRIM22 Missense_Mutation p.E142K 0.35 tolerated(0.11) possibly_damaging(0.713) TCGA-YJ-A8SW-01 11 58979712 58979712 G A MPEG1 Silent p.V209V 0.28 TCGA-YJ-A8SW-01 11 62439212 62439212 G A C11orf48 5'Flank 0.14 TCGA-YJ-A8SW-01 11 65810951 65810951 G T GAL3ST3 Missense_Mutation p.P108H 0.14 deleterious(0) probably_damaging(1) TCGA-YJ-A8SW-01 11 74013632 74013632 T G P4HA3 Missense_Mutation p.K117Q 0.06 tolerated(0.35) benign(0.156) TCGA-YJ-A8SW-01 11 77705695 77705695 C T INTS4 5'UTR 0.20 TCGA-YJ-A8SW-01 12 101689434 101689434 G - UTP20 Frame_Shift_Del 0.23 TCGA-YJ-A8SW-01 12 110456956 110456956 A C ANKRD13A Missense_Mutation p.E186A 0.33 tolerated(0.31) probably_damaging(0.999) TCGA-YJ-A8SW-01 12 32138464 32138464 G T KIAA1551 Missense_Mutation p.Q1525H 0.39 tolerated(0.1) benign(0.003) TCGA-YJ-A8SW-01 15 34635317 34635317 G C NOP10 5'UTR 0.29 TCGA-YJ-A8SW-01 15 35275466 35275466 C A ZNF770 Missense_Mutation p.C57F 0.43 deleterious(0) probably_damaging(0.999) TCGA-YJ-A8SW-01 15 42556382 42556382 T A TMEM87A Missense_Mutation p.Y104F 0.38 tolerated(0.24) possibly_damaging(0.858) TCGA-YJ-A8SW-01 15 54015097 54015097 C T WDR72 Silent p.A54A 0.37 TCGA-YJ-A8SW-01 15 63638797 63638797 G T CA12 Missense_Mutation p.P73H 0.06 deleterious(0) probably_damaging(0.985) TCGA-YJ-A8SW-01 16 29675595 29675595 C A SPN Silent p.T182T 0.22 TCGA-YJ-A8SW-01 16 86612462 86612462 G A FOXL1 Missense_Mutation p.E45K 0.32 deleterious(0) benign(0.359) TCGA-YJ-A8SW-01 17 10296458 10296458 C T MYH8 Missense_Mutation p.E1746K 0.18 deleterious(0) benign(0.099) TCGA-YJ-A8SW-01 17 27050939 27050939 A G RPL23A 3'UTR 0.58 TCGA-YJ-A8SW-01 17 37243903 37243903 G A PLXDC1 Silent p.S288S 0.25 TCGA-YJ-A8SW-01 17 61898979 61898985 CGTCCTC - FTSJ3 Frame_Shift_Del p.E539Mfs*38 0.51 TCGA-YJ-A8SW-01 17 66902187 66902187 G A ABCA8 Missense_Mutation p.S759L 0.32 tolerated(0.1) benign(0.017) TCGA-YJ-A8SW-01 18 51807169 51807169 C G POLI Missense_Mutation p.A231G 0.44 deleterious(0.01) probably_damaging(0.932) TCGA-YJ-A8SW-01 19 1465241 1465241 C T APC2 Silent p.G647G 0.50 TCGA-YJ-A8SW-01 19 18368186 18368186 G A KIAA1683 Missense_Mutation p.A1303V 0.28 deleterious(0) probably_damaging(1) TCGA-YJ-A8SW-01 19 39804777 39804777 C T LRFN1 Silent p.P400P 0.07 TCGA-YJ-A8SW-01 19 43690611 43690611 C G PSG5 5'UTR 0.07 TCGA-YJ-A8SW-01 19 52090595 52090595 C G ZNF175 Missense_Mutation p.C337W 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-YJ-A8SW-01 19 53643640 53643640 C A ZNF347 Missense_Mutation p.G815V 0.30 deleterious(0.02) probably_damaging(0.991) TCGA-YJ-A8SW-01 19 53668835 53668835 G C ZNF665 Nonsense_Mutation p.S303* 0.22 TCGA-YJ-A8SW-01 19 55418146 55418146 G C NCR1 Missense_Mutation p.L112F 0.19 deleterious(0) benign(0.173) TCGA-YJ-A8SW-01 19 59061121 59061121 C T TRIM28 Missense_Mutation p.S667L 0.42 tolerated(1) benign(0.007) TCGA-YJ-A8SW-01 1 151826103 151826103 C T THEM5 5'UTR 0.32 TCGA-YJ-A8SW-01 1 152186844 152186844 G A HRNR Missense_Mutation p.R2421C 0.18 unknown(0) TCGA-YJ-A8SW-01 1 16260826 16260826 G A SPEN Silent p.V2697V 0.12 TCGA-YJ-A8SW-01 1 166904684 166904684 C G ILDR2 Missense_Mutation p.G245A 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-YJ-A8SW-01 1 40028075 40028075 G A PABPC4 Missense_Mutation p.A561V 0.06 tolerated(0.07) possibly_damaging(0.694) TCGA-YJ-A8SW-01 1 42896381 42896381 A G ZMYND12 3'UTR 0.46 TCGA-YJ-A8SW-01 20 23966333 23966333 C T GGTLC1 Missense_Mutation p.V168I 0.20 tolerated(0.44) benign(0.003) TCGA-YJ-A8SW-01 20 25388520 25388520 C T GINS1 Missense_Mutation p.P22S 0.20 tolerated(0.15) benign(0.06) TCGA-YJ-A8SW-01 21 44514890 44514890 A G U2AF1 Silent p.R119R 0.07 TCGA-YJ-A8SW-01 22 23956371 23956371 C G C22orf43 Missense_Mutation p.C191S 0.26 deleterious_low_confidence(0.03) benign(0.021) TCGA-YJ-A8SW-01 2 113514462 113514462 A G CKAP2L Silent p.C162C 0.29 TCGA-YJ-A8SW-01 2 210561046 210561046 C T MAP2 Silent p.D1384D 0.28 TCGA-YJ-A8SW-01 2 240969799 240969799 G A OR6B2 Silent p.G16G 0.25 TCGA-YJ-A8SW-01 2 33487888 33487888 G T LTBP1 Missense_Mutation p.V840L 0.34 tolerated(0.15) benign(0.126) TCGA-YJ-A8SW-01 3 171362776 171362776 G T PLD1 Missense_Mutation p.L823I 0.03 deleterious(0) possibly_damaging(0.692) TCGA-YJ-A8SW-01 3 194081558 194081558 G T LRRC15 Missense_Mutation p.P78Q 0.07 tolerated(0.56) benign(0.245) TCGA-YJ-A8SW-01 3 49723624 49723624 C A MST1 Missense_Mutation p.D340Y 0.22 deleterious(0) probably_damaging(0.987) TCGA-YJ-A8SW-01 4 119204214 119204214 G C PRSS12 Missense_Mutation p.L698V 0.08 tolerated(0.1) benign(0.133) TCGA-YJ-A8SW-01 4 155219050 155219050 A G DCHS2 Missense_Mutation p.F1684S 0.35 deleterious(0) probably_damaging(0.965) TCGA-YJ-A8SW-01 5 112198210 112198210 T C SRP19 Missense_Mutation p.I16T 0.23 deleterious(0) possibly_damaging(0.66) TCGA-YJ-A8SW-01 5 138861145 138861145 G T TMEM173 Missense_Mutation p.L49I 0.56 tolerated(0.25) benign(0.144) TCGA-YJ-A8SW-01 5 150908872 150908872 G T FAT2 Missense_Mutation p.S3298Y 0.38 benign(0.213) TCGA-YJ-A8SW-01 5 169697831 169697831 C T LCP2 Missense_Mutation p.V139M 0.37 tolerated(0.2) benign(0.004) TCGA-YJ-A8SW-01 5 35712921 35712921 G A SPEF2 Silent p.P949P 0.32 TCGA-YJ-A8SW-01 5 37834807 37834807 G A GDNF Missense_Mutation p.A48V 0.31 tolerated(0.29) benign(0.088) TCGA-YJ-A8SW-01 5 64766898 64766898 G T ADAMTS6 Missense_Mutation p.L57I 0.15 tolerated(0.09) benign(0.3) TCGA-YJ-A8SW-01 6 28269439 28269439 G T PGBD1 Missense_Mutation p.G603V 0.36 deleterious(0.03) probably_damaging(1) TCGA-YJ-A8SW-01 6 33165658 33165658 C T RXRB Missense_Mutation p.R234H 0.07 deleterious(0.03) probably_damaging(0.999) TCGA-YJ-A8SW-01 6 46826111 46826111 T A GPR116 Missense_Mutation p.I1177F 0.06 deleterious(0) probably_damaging(0.968) TCGA-YJ-A8SW-01 6 47221120 47221120 C T TNFRSF21 Missense_Mutation p.A461T 0.30 deleterious(0) probably_damaging(1) TCGA-YJ-A8SW-01 7 107642017 107642017 C T LAMB1 Missense_Mutation p.V67I 0.12 tolerated(0.07) benign(0.127) TCGA-YJ-A8SW-01 7 133160106 133160106 A G EXOC4 Missense_Mutation p.M403V 0.54 tolerated(1) benign(0) TCGA-YJ-A8SW-01 7 49951737 49951737 G T VWC2 Nonsense_Mutation p.E312* 0.11 TCGA-YJ-A8SW-01 7 64530926 64530926 A G SNORA15 RNA 0.15 TCGA-YJ-A8SW-01 7 98522824 98522824 G T TRRAP Silent p.L971L 0.50 TCGA-YJ-A8SW-01 8 30472224 30472224 A G GTF2E2 Silent p.H89H 0.35 TCGA-YJ-A8SW-01 8 77767002 77767002 A G ZFHX4 Silent p.E2615E 0.24 TCGA-YJ-A8SW-01 9 127289153 127289153 A G NR6A1 Missense_Mutation p.I369T 0.40 deleterious(0.02) benign(0.245) TCGA-YJ-A8SW-01 9 135771698 135771698 G A TSC1 Missense_Mutation p.P1140L 0.38 tolerated(0.09) benign(0.005) TCGA-YJ-A8SW-01 X 48547130 48547130 G A WAS Missense_Mutation p.R338H 1.00 deleterious(0.01) probably_damaging(0.991) TCGA-YJ-A8SW-01 X 73811565 73811565 G - RLIM Frame_Shift_Del p.S530Afs*8 0.94 TCGA-YL-A8HJ-01 11 114112945 114112945 G A ZBTB16 Missense_Mutation p.A504T 0.24 tolerated(0.08) probably_damaging(0.962) TCGA-YL-A8HJ-01 11 1213534 1213534 G A MUC5AC RNA 0.07 TCGA-YL-A8HJ-01 12 39161526 39161526 C T CPNE8 Missense_Mutation p.M162I 0.17 tolerated(0.1) benign(0.119) TCGA-YL-A8HJ-01 12 64825398 64825398 C A XPOT Missense_Mutation p.T686K 0.07 deleterious(0.01) benign(0.052) TCGA-YL-A8HJ-01 13 58207773 58207773 G A PCDH17 Missense_Mutation p.A365T 0.31 deleterious(0) probably_damaging(0.994) TCGA-YL-A8HJ-01 14 105419126 105419126 C T AHNAK2 Missense_Mutation p.A888T 0.06 possibly_damaging(0.634) TCGA-YL-A8HJ-01 14 106405838 106405838 C T IGHV6-1 Missense_Mutation p.G46R 0.21 deleterious(0.01) probably_damaging(0.972) TCGA-YL-A8HJ-01 14 25075816 25075816 C T GZMH Missense_Mutation p.R245H 0.16 tolerated(0.28) benign(0) TCGA-YL-A8HJ-01 15 66850145 66850145 G A LCTL Silent p.A279A 0.07 TCGA-YL-A8HJ-01 16 70843713 70843713 T A HYDIN Silent p.T4952T 0.09 TCGA-YL-A8HJ-01 17 10440625 10440625 C T MYH2 Missense_Mutation p.V608M 0.19 deleterious(0) probably_damaging(0.965) TCGA-YL-A8HJ-01 17 27011735 27011735 C A SUPT6H Silent p.S787S 0.07 TCGA-YL-A8HJ-01 19 14213651 14213651 C T PRKACA Missense_Mutation p.V105I 0.13 tolerated(0.35) possibly_damaging(0.459) TCGA-YL-A8HJ-01 19 19745500 19745500 C T GMIP Missense_Mutation p.V634M 0.15 deleterious(0) probably_damaging(0.964) TCGA-YL-A8HJ-01 19 31767790 31767790 T C TSHZ3 Missense_Mutation p.D970G 0.10 deleterious(0) probably_damaging(0.998) TCGA-YL-A8HJ-01 19 35849909 35849909 C T FFAR3 Silent p.F39F 0.13 TCGA-YL-A8HJ-01 19 38989877 38989877 G A RYR1 Missense_Mutation p.V2341I 0.14 benign(0.16) TCGA-YL-A8HJ-01 19 58371137 58371137 G T ZNF587 Missense_Mutation p.V453F 0.13 tolerated(0.12) possibly_damaging(0.865) TCGA-YL-A8HJ-01 1 16460075 16460075 C T EPHA2 Missense_Mutation p.V589M 0.11 deleterious(0) probably_damaging(0.981) TCGA-YL-A8HJ-01 1 180159574 180159574 G A QSOX1 Missense_Mutation p.V383I 0.15 deleterious(0.02) benign(0.125) TCGA-YL-A8HJ-01 1 3428622 3428622 C T MEGF6 Silent p.K308K 0.15 TCGA-YL-A8HJ-01 1 94517208 94517208 C T ABCA4 Silent p.S878S 0.10 TCGA-YL-A8HJ-01 20 44682327 44682327 G A SLC12A5 Silent p.A909A 0.19 TCGA-YL-A8HJ-01 21 47349908 47349908 C T PCBP3 Silent p.P265P 0.09 TCGA-YL-A8HJ-01 3 111263902 111263902 A G CD96 Missense_Mutation p.E24G 0.10 tolerated(0.11) benign(0.001) TCGA-YL-A8HJ-01 3 112546090 112546090 T C CD200R1L Splice_Site p.X144_splice 0.16 TCGA-YL-A8HJ-01 5 137763721 137763721 G A KDM3B Missense_Mutation p.V1567I 0.18 deleterious(0.03) probably_damaging(0.93) TCGA-YL-A8HJ-01 5 176942200 176942200 C T DDX41 Missense_Mutation p.G211S 0.08 deleterious(0) probably_damaging(1) TCGA-YL-A8HJ-01 6 109763184 109763184 A T SMPD2 Missense_Mutation p.I78F 0.16 tolerated(0.07) benign(0.02) TCGA-YL-A8HJ-01 6 145157448 145157448 T C UTRN Missense_Mutation p.V3279A 0.18 tolerated(0.69) benign(0.025) TCGA-YL-A8HJ-01 6 44229519 44229519 C T NFKBIE Missense_Mutation p.A318T 0.20 deleterious(0) probably_damaging(0.992) TCGA-YL-A8HJ-01 7 28997483 28997483 G A AC005013.5 Intron 0.11 TCGA-YL-A8HJ-01 8 114326822 114326822 G A CSMD3 Missense_Mutation p.H127Y 0.15 tolerated(0.43) benign(0.275) TCGA-YL-A8HJ-01 8 125499608 125499608 G A RNF139 Missense_Mutation p.R573Q 0.08 deleterious(0) probably_damaging(1) TCGA-YL-A8HJ-01 9 102590779 102590779 C T NR4A3 Missense_Mutation p.A163V 0.11 tolerated(0.49) benign(0.049) TCGA-YL-A8HJ-01 X 127185975 127185975 G T ACTRT1 Missense_Mutation p.H71N 0.09 tolerated(0.25) possibly_damaging(0.728) TCGA-YL-A8HJ-01 X 151870216 151870216 A T MAGEA6 Silent p.P302P 0.28 TCGA-YL-A8HJ-01 X 36103579 36103579 T C CHDC2 Missense_Mutation p.S189P 0.29 tolerated(0.13) probably_damaging(0.976) TCGA-YL-A8HJ-01 X 79984395 79984395 C A BRWD3 Missense_Mutation p.L414F 0.19 tolerated(0.08) benign(0.009) TCGA-YL-A8HK-01 11 22647295 22647295 G C FANCF Missense_Mutation p.T21S 0.35 tolerated(0.55) benign(0.012) TCGA-YL-A8HK-01 11 33050184 33050184 C T DEPDC7 Missense_Mutation p.R210C 0.19 deleterious(0) probably_damaging(0.997) TCGA-YL-A8HK-01 11 35456159 35456159 C G PAMR1 Silent p.L526L 0.23 TCGA-YL-A8HK-01 11 82443541 82443541 C T FAM181B Missense_Mutation p.D411N 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-YL-A8HK-01 12 101018420 101018420 C T GAS2L3 Silent p.L613L 0.23 TCGA-YL-A8HK-01 12 13716215 13716215 C T GRIN2B Silent p.P1319P 0.13 TCGA-YL-A8HK-01 12 40158559 40158559 T C SLC2A13 Missense_Mutation p.Y516C 0.15 deleterious(0) probably_damaging(1) TCGA-YL-A8HK-01 12 57593708 57593708 G A LRP1 Missense_Mutation p.C3305Y 0.15 probably_damaging(0.993) TCGA-YL-A8HK-01 15 85402608 85402608 G T ALPK3 Nonsense_Mutation p.E1520* 0.18 TCGA-YL-A8HK-01 16 30774767 30774767 G T RNF40 Missense_Mutation p.R110L 0.28 deleterious(0.01) benign(0.106) TCGA-YL-A8HK-01 17 41152084 41152085 - A RPL27 Frame_Shift_Ins p.V74Sfs*3 0.13 TCGA-YL-A8HK-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.22 deleterious(0) probably_damaging(1) TCGA-YL-A8HK-01 19 14952014 14952014 G A OR7A10 Missense_Mutation p.R226C 0.18 tolerated_low_confidence(0.46) benign(0.006) TCGA-YL-A8HK-01 1 152280684 152280684 G C FLG Silent p.G2226G 0.16 TCGA-YL-A8HK-01 1 152383267 152383267 G A CRNN Silent p.C97C 0.17 TCGA-YL-A8HK-01 20 50407255 50407255 G A SALL4 Silent p.T589T 0.28 TCGA-YL-A8HK-01 3 109031399 109031399 G A DPPA2 Silent p.Y58Y 0.12 TCGA-YL-A8HK-01 3 119361291 119361291 C T POPDC2 3'UTR 0.31 TCGA-YL-A8HK-01 3 46450522 46450522 C T CCRL2 Missense_Mutation p.R330C 0.24 tolerated(0.35) benign(0.002) TCGA-YL-A8HK-01 3 49449962 49449962 C T TCTA Missense_Mutation p.R35C 0.07 deleterious(0) probably_damaging(0.994) TCGA-YL-A8HK-01 5 68555730 68555730 C G CDK7 Missense_Mutation p.P165R 0.20 deleterious(0) probably_damaging(0.999) TCGA-YL-A8HK-01 8 134042179 134042179 G A TG Missense_Mutation p.A2384T 0.06 deleterious(0) probably_damaging(0.938) TCGA-YL-A8HK-01 8 145726591 145726591 C T PPP1R16A Nonsense_Mutation p.Q373* 0.27 TCGA-YL-A8HK-01 9 130098420 130098420 G A GARNL3 Missense_Mutation p.R296H 0.18 deleterious(0) probably_damaging(1) TCGA-YL-A8HK-01 9 43627100 43627100 T C SPATA31A6 Silent p.Q529Q 0.22 TCGA-YL-A8HL-01 11 55406192 55406192 G A OR4P4 Missense_Mutation p.R120H 0.86 deleterious(0.05) benign(0.165) TCGA-YL-A8HL-01 11 66039435 66039435 G A RAB1B Intron 0.67 TCGA-YL-A8HL-01 11 6977301 6977301 A C ZNF215 Missense_Mutation p.T365P 0.38 tolerated(0.27) benign(0.001) TCGA-YL-A8HL-01 11 95561040 95561040 G T CEP57 Missense_Mutation p.V326F 0.36 deleterious(0) probably_damaging(0.997) TCGA-YL-A8HL-01 12 21377736 21377736 C T SLCO1B1 Missense_Mutation p.R610C 0.14 deleterious(0) probably_damaging(0.946) TCGA-YL-A8HL-01 12 26780982 26780982 G A ITPR2 Silent p.D1016D 0.43 TCGA-YL-A8HL-01 15 35529655 35529655 A T ANP32AP1 RNA 0.40 TCGA-YL-A8HL-01 16 31476480 31476480 G T ARMC5 Intron 0.53 TCGA-YL-A8HL-01 16 51175653 51175653 G A SALL1 Silent p.G160G 0.27 TCGA-YL-A8HL-01 16 57921842 57921842 C T CNGB1 Missense_Mutation p.G1127S 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-YL-A8HL-01 17 3653658 3653658 G A ITGAE Missense_Mutation p.A671V 0.63 tolerated(0.81) probably_damaging(0.984) TCGA-YL-A8HL-01 17 62049712 62049712 G A SCN4A Missense_Mutation p.A131V 0.58 deleterious(0) benign(0.008) TCGA-YL-A8HL-01 17 7577514 7577514 G A TP53 Missense_Mutation p.T256I 0.76 deleterious(0) probably_damaging(1) TCGA-YL-A8HL-01 17 79910954 79910954 C T NOTUM Silent p.G458G 0.05 TCGA-YL-A8HL-01 18 59166542 59166542 C T CDH20 Nonsense_Mutation p.R124* 0.48 TCGA-YL-A8HL-01 19 9296747 9296747 G A OR7D2 Missense_Mutation p.C97Y 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-YL-A8HL-01 1 161019032 161019032 G A ARHGAP30 Silent p.S593S 0.30 TCGA-YL-A8HL-01 1 204128550 204128550 G A REN Silent p.D222D 0.35 TCGA-YL-A8HL-01 1 94032967 94032967 G A BCAR3 Missense_Mutation p.T723I 0.57 tolerated(0.46) benign(0.014) TCGA-YL-A8HL-01 20 14307317 14307317 G T FLRT3 Missense_Mutation p.S279Y 0.43 deleterious(0) probably_damaging(0.997) TCGA-YL-A8HL-01 20 48252911 48252911 C A B4GALT5 Missense_Mutation p.A369S 0.21 tolerated(0.29) benign(0.004) TCGA-YL-A8HL-01 5 19612698 19612698 G A CDH18 Missense_Mutation p.T219M 0.29 tolerated(0.07) probably_damaging(1) TCGA-YL-A8HL-01 6 155757616 155757616 C T NOX3 Missense_Mutation p.R245H 0.44 tolerated(0.86) benign(0.001) TCGA-YL-A8HL-01 7 155094516 155094516 G A INSIG1 Missense_Mutation p.G255E 0.05 deleterious(0) probably_damaging(1) TCGA-YL-A8HL-01 9 116356449 116356449 G T RGS3 Intron 0.31 TCGA-YL-A8HL-01 X 101971615 101971615 C A GPRASP2 Missense_Mutation p.D606E 0.76 tolerated(0.26) possibly_damaging(0.533) TCGA-YL-A8HM-01 10 118117378 118117378 G T CCDC172 Missense_Mutation p.C194F 0.12 tolerated(0.7) benign(0.151) TCGA-YL-A8HM-01 10 135025035 135025035 G T KNDC1 Missense_Mutation p.G1340W 0.42 deleterious(0) probably_damaging(0.972) TCGA-YL-A8HM-01 10 75896496 75896496 T G AP3M1 Missense_Mutation p.L113F 0.25 deleterious(0) probably_damaging(0.999) TCGA-YL-A8HM-01 11 57466437 57466440 GGGA AGG ZDHHC5 Frame_Shift_Del p.R510Qfs*105 0.22 TCGA-YL-A8HM-01 12 110238504 110238504 C T TRPV4 Missense_Mutation p.V258M 0.06 deleterious(0.02) possibly_damaging(0.64) TCGA-YL-A8HM-01 12 130841508 130841508 G T PIWIL1 Missense_Mutation p.G484C 0.13 deleterious(0) probably_damaging(0.935) TCGA-YL-A8HM-01 12 130851735 130851735 G C PIWIL1 Missense_Mutation p.Q751H 0.45 tolerated(0.13) benign(0.002) TCGA-YL-A8HM-01 12 6979576 6979576 C A TPI1 3'UTR 0.26 TCGA-YL-A8HM-01 14 74824966 74824966 C T VRTN Missense_Mutation p.P494S 0.27 tolerated(0.32) benign(0.009) TCGA-YL-A8HM-01 14 94929536 94929536 G T SERPINA9 Missense_Mutation p.S401Y 0.14 tolerated(0.17) possibly_damaging(0.657) TCGA-YL-A8HM-01 15 34527452 34527452 C T SLC12A6 Silent p.K1097K 0.33 TCGA-YL-A8HM-01 16 15839063 15839063 C T MYH11 Missense_Mutation p.A822T 0.11 probably_damaging(0.998) TCGA-YL-A8HM-01 16 31090753 31090753 C T ZNF646 Silent p.L1036L 0.55 TCGA-YL-A8HM-01 16 31926190 31926190 G - ZNF267 Frame_Shift_Del p.R207Qfs*19 0.12 TCGA-YL-A8HM-01 16 69786182 69786182 A G NOB1 Missense_Mutation p.F97L 0.12 tolerated(0.67) benign(0.002) TCGA-YL-A8HM-01 17 10399704 10399704 C A MYH1 Missense_Mutation p.A1607S 0.21 tolerated(0.35) benign(0.07) TCGA-YL-A8HM-01 17 47696688 47696688 T G SPOP Missense_Mutation p.Y87S 0.51 tolerated(0.06) probably_damaging(1) TCGA-YL-A8HM-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.07 deleterious(0) probably_damaging(1) TCGA-YL-A8HM-01 17 76435217 76435217 G A DNAH17 Silent p.N3906N 0.49 TCGA-YL-A8HM-01 19 12874000 12874000 C G HOOK2 3'UTR 0.50 TCGA-YL-A8HM-01 19 2934177 2934177 C T ZNF77 Silent p.R316R 0.47 TCGA-YL-A8HM-01 19 3179719 3179719 G T S1PR4 Missense_Mutation p.R310L 0.61 tolerated(0.22) benign(0.257) TCGA-YL-A8HM-01 19 37117962 37117962 C T ZNF382 Missense_Mutation p.A388V 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-YL-A8HM-01 19 45561124 45561124 A C CLASRP Missense_Mutation p.N194T 0.46 tolerated(0.08) benign(0.04) TCGA-YL-A8HM-01 19 6854100 6854100 C A VAV1 Silent p.I825I 0.07 TCGA-YL-A8HM-01 1 153330759 153330759 G T S100A9 5'UTR 0.34 TCGA-YL-A8HM-01 1 156563208 156563208 G A APOA1BP Silent p.T175T 0.11 TCGA-YL-A8HM-01 1 196658724 196658724 C T CFH Missense_Mutation p.S380L 0.85 tolerated(0.18) benign(0.111) TCGA-YL-A8HM-01 1 38328017 38328017 A C INPP5B Missense_Mutation p.F904L 0.24 deleterious(0) probably_damaging(0.999) TCGA-YL-A8HM-01 20 3204151 3204151 A T ITPA 3'UTR 0.80 TCGA-YL-A8HM-01 20 36855562 36855562 G A KIAA1755 Silent p.D682D 0.33 TCGA-YL-A8HM-01 20 9546787 9546787 G A PAK7 Missense_Mutation p.P412L 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-YL-A8HM-01 2 113819703 113819703 G C IL36RN Missense_Mutation p.E40Q 0.50 deleterious(0.01) probably_damaging(0.986) TCGA-YL-A8HM-01 2 239160292 239160292 C A PER2 Silent p.S1074S 0.47 TCGA-YL-A8HM-01 2 27449052 27449052 A G CAD Missense_Mutation p.I632M 0.38 deleterious(0) probably_damaging(0.91) TCGA-YL-A8HM-01 2 45551 45551 G A FAM110C Nonsense_Mutation p.Q279* 0.32 TCGA-YL-A8HM-01 2 87085245 87085245 A C CD8B Missense_Mutation p.I113S 0.55 deleterious(0.03) benign(0.117) TCGA-YL-A8HM-01 3 125176113 125176113 A G SNX4 Silent p.T347T 0.06 TCGA-YL-A8HM-01 3 15468050 15468050 T A METTL6 5'UTR 0.06 TCGA-YL-A8HM-01 4 57181641 57181641 C A KIAA1211 Missense_Mutation p.S658Y 0.24 deleterious(0.01) possibly_damaging(0.781) TCGA-YL-A8HM-01 5 31532486 31532486 A G C5orf22 5'UTR 0.29 TCGA-YL-A8HM-01 6 32714045 32714045 G A HLA-DQA2 Silent p.E214E 0.31 TCGA-YL-A8HM-01 7 13975392 13975392 G A ETV1 Silent p.F165F 0.54 TCGA-YL-A8HM-01 7 143096819 143096819 C T EPHA1 Missense_Mutation p.E254K 0.06 deleterious(0.04) benign(0.313) TCGA-YL-A8HM-01 7 148768340 148768340 C T ZNF786 Silent p.P508P 0.09 TCGA-YL-A8HM-01 8 27650318 27650318 C A ESCO2 Missense_Mutation p.P496H 0.62 deleterious(0.04) probably_damaging(0.971) TCGA-YL-A8HM-01 8 77895648 77895648 G A PEX2 Missense_Mutation p.T256I 0.16 tolerated(0.05) benign(0.072) TCGA-YL-A8HM-01 9 114304902 114304902 A T ZNF483 Missense_Mutation p.S563C 0.17 deleterious(0.01) benign(0.251) TCGA-YL-A8HM-01 9 135470236 135470236 G A DDX31 3'UTR 0.23 TCGA-YL-A8HM-01 X 111095551 111095551 G A TRPC5 Missense_Mutation p.S451F 0.87 tolerated(0.14) probably_damaging(0.995) TCGA-YL-A8HM-01 X 128679013 128679013 A C OCRL Missense_Mutation p.Q66H 0.92 deleterious_low_confidence(0.01) probably_damaging(0.936) TCGA-YL-A8HM-01 X 154158843 154158844 - T F8 Frame_Shift_Ins p.N1074Kfs*13 0.41 TCGA-YL-A8HO-01 10 96580307 96580307 G A CYP2C19 Missense_Mutation p.A292T 0.06 tolerated(0.4) benign(0.002) TCGA-YL-A8HO-01 11 125483004 125483004 G T STT3A Missense_Mutation p.D496Y 0.08 tolerated(0.07) benign(0.049) TCGA-YL-A8HO-01 11 27679584 27679584 T C BDNF Silent p.Q258Q 0.09 TCGA-YL-A8HO-01 11 6231080 6231080 G A C11orf42 Missense_Mutation p.V25I 0.06 deleterious(0) probably_damaging(0.997) TCGA-YL-A8HO-01 13 76104276 76104276 A G COMMD6 Missense_Mutation p.F61L 0.05 tolerated(0.26) benign(0.294) TCGA-YL-A8HO-01 14 24642195 24642195 C T REC8 Silent p.A71A 0.13 TCGA-YL-A8HO-01 14 72054926 72054926 A T SIPA1L1 Missense_Mutation p.S113C 0.07 deleterious(0.04) possibly_damaging(0.522) TCGA-YL-A8HO-01 14 79181239 79181239 G T NRXN3 Missense_Mutation p.A228S 0.07 deleterious(0.02) probably_damaging(0.989) TCGA-YL-A8HO-01 15 56126282 56126282 T C NEDD4 Missense_Mutation p.K1142R 0.18 tolerated(0.2) probably_damaging(0.996) TCGA-YL-A8HO-01 15 65916488 65916488 C T SLC24A1 Missense_Mutation p.R24C 0.20 possibly_damaging(0.876) TCGA-YL-A8HO-01 15 99467806 99467806 A C IGF1R Missense_Mutation p.K892T 0.25 tolerated(0.24) probably_damaging(0.924) TCGA-YL-A8HO-01 16 21209089 21209089 C T ZP2 Missense_Mutation p.R698Q 0.09 tolerated(0.21) benign(0) TCGA-YL-A8HO-01 16 9858336 9858336 C A GRIN2A Missense_Mutation p.R1022L 0.06 tolerated_low_confidence(0.12) probably_damaging(0.971) TCGA-YL-A8HO-01 17 7227518 7227519 CT - NEURL4 Frame_Shift_Del p.Q657Rfs*37 0.17 TCGA-YL-A8HO-01 18 74091976 74091976 T A ZNF516 Silent p.G698G 0.14 TCGA-YL-A8HO-01 19 4282875 4282875 C T SHD Silent p.A102A 0.27 TCGA-YL-A8HO-01 19 51918364 51918364 T G SIGLEC10 Splice_Site p.X444_splice 0.18 TCGA-YL-A8HO-01 19 59060745 59060745 G A TRIM28 Silent p.E570E 0.29 TCGA-YL-A8HO-01 1 152884070 152884070 C A IVL 3'UTR 0.20 TCGA-YL-A8HO-01 1 155291553 155291553 G A RUSC1 5'UTR 0.05 TCGA-YL-A8HO-01 1 201046246 201046246 C T CACNA1S Silent p.T543T 0.19 TCGA-YL-A8HO-01 1 41098808 41098808 G A RIMS3 Silent p.S135S 0.09 TCGA-YL-A8HO-01 1 89659075 89659075 C T GBP4 Silent p.S128S 0.36 TCGA-YL-A8HO-01 1 92979231 92979231 C T EVI5 Silent p.S805S 0.05 TCGA-YL-A8HO-01 20 1592130 1592130 G A SIRPB1 Intron 0.39 TCGA-YL-A8HO-01 22 42525129 42525129 G T CYP2D6 Silent p.S137S 0.07 TCGA-YL-A8HO-01 2 113514387 113514387 G T CKAP2L Missense_Mutation p.N187K 0.14 deleterious(0) possibly_damaging(0.654) TCGA-YL-A8HO-01 2 120847945 120847945 T G EPB41L5 Missense_Mutation p.F299C 0.25 deleterious(0) probably_damaging(1) TCGA-YL-A8HO-01 2 202899587 202899587 C G FZD7 Missense_Mutation p.H73D 0.24 deleterious(0) probably_damaging(0.92) TCGA-YL-A8HO-01 3 122180094 122180094 G A KPNA1 Nonsense_Mutation p.R137* 0.28 TCGA-YL-A8HO-01 3 3887996 3887996 G T LRRN1 Silent p.S557S 0.05 TCGA-YL-A8HO-01 4 164506987 164506987 G T MARCH1 Missense_Mutation p.Q113K 0.10 tolerated(0.18) probably_damaging(0.998) TCGA-YL-A8HO-01 4 40829194 40829194 A G APBB2 Missense_Mutation p.S563P 0.07 tolerated(0.18) benign(0.063) TCGA-YL-A8HO-01 5 141334957 141334957 C T PCDH12 Silent p.P820P 0.14 TCGA-YL-A8HO-01 6 26217407 26217407 A C HIST1H2AE Missense_Mutation p.N69H 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YL-A8HO-01 7 99217321 99217321 G C ZSCAN25 Missense_Mutation p.R31T 0.04 deleterious(0.02) benign(0.001) TCGA-YL-A8HO-01 8 133053367 133053367 G A OC90 Silent p.A127A 0.13 TCGA-YL-A8HO-01 8 26623613 26623613 A G ADRA1A Intron 0.18 TCGA-YL-A8HO-01 8 80831351 80831351 C T MRPS28 Missense_Mutation p.R143Q 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-YL-A8HO-01 9 107576492 107576492 G A ABCA1 Nonsense_Mutation p.R1270* 0.17 TCGA-YL-A8HO-01 9 96294518 96294518 C G FAM120A Missense_Mutation p.R606G 0.06 deleterious(0) probably_damaging(1) TCGA-YL-A8HO-01 X 135314095 135314095 C A MAP7D3 Missense_Mutation p.V341L 0.18 tolerated(0.32) benign(0.002) TCGA-YL-A8HO-01 X 16707690 16707690 C A CTPS2 Missense_Mutation p.R252L 0.57 deleterious(0.01) probably_damaging(0.922) TCGA-YL-A8HO-01 X 3240572 3240572 C T MXRA5 Missense_Mutation p.D1052N 0.16 tolerated(0.11) benign(0.079) TCGA-YL-A8HO-01 Y 15023867 15023867 G T DDX3Y Nonsense_Mutation p.G90* 0.14 TCGA-YL-A8S8-01 10 14995921 14995921 A G DCLRE1C Missense_Mutation p.F30S 0.28 deleterious(0) probably_damaging(0.999) TCGA-YL-A8S8-01 11 1029109 1029109 G A MUC6 Silent p.Y439Y 0.24 TCGA-YL-A8S8-01 11 122680623 122680624 CT A UBASH3B 3'UTR 0.16 TCGA-YL-A8S8-01 11 36595191 36595191 A G RAG1 Missense_Mutation p.I113V 0.41 tolerated_low_confidence(0.07) possibly_damaging(0.558) TCGA-YL-A8S8-01 11 9838385 9838385 A G SBF2 Splice_Site p.X1326_splice 0.26 TCGA-YL-A8S8-01 12 2622020 2622020 T A CACNA1C Missense_Mutation p.D420E 0.16 tolerated(0.33) benign(0.344) TCGA-YL-A8S8-01 13 41508157 41508157 G T ELF1 Missense_Mutation p.Q422K 0.39 tolerated(0.34) benign(0.41) TCGA-YL-A8S8-01 16 30722964 30722964 A G SRCAP Missense_Mutation p.D464G 0.23 unknown(0) TCGA-YL-A8S8-01 16 81249856 81249856 C T PKD1L2 Missense_Mutation p.E153K 0.28 deleterious(0) possibly_damaging(0.858) TCGA-YL-A8S8-01 16 844192 844192 G T CHTF18 Missense_Mutation p.K647N 0.32 deleterious(0) possibly_damaging(0.776) TCGA-YL-A8S8-01 17 34324881 34324881 C A CCL15 Missense_Mutation p.K88N 0.27 tolerated(0.09) benign(0.232) TCGA-YL-A8S8-01 17 47696689 47696689 A T SPOP Missense_Mutation p.Y87N 0.28 tolerated(0.1) probably_damaging(1) TCGA-YL-A8S8-01 17 7529702 7529702 T G SAT2 3'UTR 0.06 TCGA-YL-A8S8-01 18 13049296 13049296 G T CEP192 Missense_Mutation p.A836S 0.21 tolerated(0.25) benign(0.001) TCGA-YL-A8S8-01 19 12866250 12866250 G A BEST2 Missense_Mutation p.V232I 0.22 tolerated(1) benign(0.023) TCGA-YL-A8S8-01 19 17374839 17374839 C A USHBP1 Nonsense_Mutation p.E59* 0.18 TCGA-YL-A8S8-01 19 22363081 22363081 C T ZNF676 Missense_Mutation p.E480K 0.30 tolerated(0.17) probably_damaging(0.996) TCGA-YL-A8S8-01 19 30935384 30935384 C T ZNF536 Silent p.C305C 0.43 TCGA-YL-A8S8-01 19 54965662 54965662 G A LENG8 Silent p.Q160Q 0.09 TCGA-YL-A8S8-01 19 59012735 59012735 A T SLC27A5 Missense_Mutation p.F367Y 0.30 deleterious(0.03) benign(0.269) TCGA-YL-A8S8-01 1 115222328 115222328 T C AMPD1 Missense_Mutation p.K290E 0.33 deleterious(0) probably_damaging(0.998) TCGA-YL-A8S8-01 1 151139435 151139435 C T SCNM1 Nonsense_Mutation p.R50* 0.24 TCGA-YL-A8S8-01 1 155296881 155296881 C T RUSC1 Missense_Mutation p.P791L 0.29 deleterious(0) possibly_damaging(0.493) TCGA-YL-A8S8-01 1 201380592 201380592 G A TNNI1 Missense_Mutation p.R117C 0.46 deleterious(0) probably_damaging(1) TCGA-YL-A8S8-01 1 212964929 212964930 - TT NSL1 Frame_Shift_Ins p.L60Sfs*61 0.18 TCGA-YL-A8S8-01 1 228284842 228284842 C T ARF1 Silent p.F9F 0.29 TCGA-YL-A8S8-01 1 43825955 43825955 C - CDC20 Frame_Shift_Del p.L217Cfs*48 0.26 TCGA-YL-A8S8-01 1 6206323 6206323 C T CHD5 Missense_Mutation p.R584H 0.34 deleterious(0) probably_damaging(0.985) TCGA-YL-A8S8-01 20 35207278 35207278 G A TGIF2 Missense_Mutation p.R34Q 0.24 deleterious(0.03) probably_damaging(0.964) TCGA-YL-A8S8-01 21 47987298 47987298 G A DIP2A Nonsense_Mutation p.W1493* 0.19 TCGA-YL-A8S8-01 2 1926342 1926342 G A MYT1L Missense_Mutation p.A400V 0.67 tolerated(0.24) benign(0.031) TCGA-YL-A8S8-01 2 31155004 31155004 G A GALNT14 Nonsense_Mutation p.R335* 0.32 TCGA-YL-A8S8-01 2 74762802 74762802 G A LOXL3 Silent p.G443G 0.45 TCGA-YL-A8S8-01 3 10128872 10128872 T A FANCD2 Nonsense_Mutation p.C1130* 0.24 TCGA-YL-A8S8-01 3 49294572 49294572 T C CCDC36 Missense_Mutation p.S548P 0.40 tolerated(0.17) possibly_damaging(0.898) TCGA-YL-A8S8-01 3 49756032 49756032 G A AMIGO3 Silent p.Y289Y 0.41 TCGA-YL-A8S8-01 4 42403513 42403513 G A SHISA3 3'UTR 0.17 TCGA-YL-A8S8-01 5 112175490 112175490 C A APC Nonsense_Mutation p.S1400* 0.13 TCGA-YL-A8S8-01 5 147803625 147803626 - A FBXO38 Frame_Shift_Ins p.T562Nfs*14 0.31 TCGA-YL-A8S8-01 5 179221091 179221091 G A LTC4S Missense_Mutation p.E4K 0.23 tolerated(0.16) benign(0.143) TCGA-YL-A8S8-01 6 132032076 132032076 C A CTAGE9 Nonsense_Mutation p.E28* 0.23 TCGA-YL-A8S8-01 6 32017326 32017326 C A TNXB 5'Flank 0.23 TCGA-YL-A8S8-01 6 33381539 33381539 G A PHF1 Missense_Mutation p.R205Q 0.08 tolerated(0.29) benign(0.004) TCGA-YL-A8S8-01 6 96054103 96054103 A G MANEA Missense_Mutation p.E404G 0.31 deleterious(0) probably_damaging(0.999) TCGA-YL-A8S8-01 7 112462373 112462373 G A C7orf60 Missense_Mutation p.A215V 0.38 deleterious(0.02) probably_damaging(0.963) TCGA-YL-A8S8-01 7 2473204 2473204 G A CHST12 Silent p.P310P 0.28 TCGA-YL-A8S8-01 7 5879595 5879595 G A ZNF815P RNA 0.41 TCGA-YL-A8S8-01 7 73588718 73588718 C T EIF4H Missense_Mutation p.A2V 0.27 tolerated_low_confidence(0.09) benign(0.106) TCGA-YL-A8S8-01 8 79514100 79514100 C G PKIA 3'UTR 0.33 TCGA-YL-A8S8-01 X 10417583 10417583 T C MID1 Missense_Mutation p.Y610C 0.67 tolerated(0.16) benign(0.397) TCGA-YL-A8S8-01 X 135593232 135593232 G A HTATSF1 Missense_Mutation p.G443D 0.05 tolerated_low_confidence(1) benign(0.001) TCGA-YL-A8S8-01 X 50213361 50213361 G T DGKK RNA 0.61 TCGA-YL-A8S9-01 10 37520446 37520446 T G ANKRD30A 3'UTR 0.68 TCGA-YL-A8S9-01 10 43279996 43279996 C T BMS1 Missense_Mutation p.R52W 0.43 deleterious(0) benign(0.042) TCGA-YL-A8S9-01 10 62038573 62038574 - T ANK3 Frame_Shift_Ins p.V125Sfs*37 0.39 TCGA-YL-A8S9-01 10 70105526 70105526 C A RUFY2 Nonstop_Mutation p.*642Lext*70 0.37 TCGA-YL-A8S9-01 11 108218045 108218045 A G ATM Missense_Mutation p.N2875S 0.92 deleterious(0) probably_damaging(1) TCGA-YL-A8S9-01 11 118949846 118949846 G T VPS11 Missense_Mutation p.Q757H 0.85 deleterious(0) probably_damaging(0.992) TCGA-YL-A8S9-01 11 44069708 44069708 C T ACCSL Missense_Mutation p.T41M 0.42 tolerated(0.11) benign(0) TCGA-YL-A8S9-01 12 113612881 113612881 G A DDX54 Silent p.S278S 0.44 TCGA-YL-A8S9-01 12 118463581 118463581 C G RFC5 Missense_Mutation p.A204G 0.46 deleterious(0.01) benign(0.03) TCGA-YL-A8S9-01 12 49231321 49231321 G - DDX23 Frame_Shift_Del p.L247Cfs*53 0.34 TCGA-YL-A8S9-01 14 38061208 38061208 G C FOXA1 Missense_Mutation p.R261G 0.57 deleterious(0) probably_damaging(1) TCGA-YL-A8S9-01 14 58030926 58030926 T A SLC35F4 Missense_Mutation p.D498V 0.40 deleterious(0.02) possibly_damaging(0.779) TCGA-YL-A8S9-01 15 25959331 25959331 T G ATP10A Silent p.R612R 0.46 TCGA-YL-A8S9-01 15 45968418 45968418 C T SQRDL Silent p.N258N 0.44 TCGA-YL-A8S9-01 15 53080999 53080999 G A ONECUT1 Silent p.R361R 0.57 TCGA-YL-A8S9-01 16 11051757 11051757 T G CLEC16A Missense_Mutation p.S67A 0.04 tolerated(0.05) possibly_damaging(0.536) TCGA-YL-A8S9-01 16 65038589 65038589 C T CDH11 Missense_Mutation p.V62M 0.85 deleterious(0) probably_damaging(0.934) TCGA-YL-A8S9-01 16 90161816 90161816 C T TUBB8P7 RNA 0.07 TCGA-YL-A8S9-01 17 10356590 10356590 G A MYH4 Missense_Mutation p.T997I 0.04 deleterious(0.01) possibly_damaging(0.756) TCGA-YL-A8S9-01 17 21825425 21825425 G A FAM27L RNA 0.37 TCGA-YL-A8S9-01 17 26488195 26488195 C T NLK Silent p.V218V 0.22 TCGA-YL-A8S9-01 17 30529851 30529851 A G RHOT1 Missense_Mutation p.N422D 0.43 tolerated(0.1) benign(0.021) TCGA-YL-A8S9-01 17 73831510 73831510 G A UNC13D Missense_Mutation p.R610C 0.18 deleterious(0) possibly_damaging(0.849) TCGA-YL-A8S9-01 19 14875289 14875289 T A EMR2 Missense_Mutation p.N347I 0.52 tolerated(0.18) benign(0.01) TCGA-YL-A8S9-01 19 42473001 42473001 C T ATP1A3 Missense_Mutation p.V932I 0.60 deleterious(0.03) probably_damaging(0.993) TCGA-YL-A8S9-01 19 4902803 4902803 G A ARRDC5 Missense_Mutation p.P26L 0.41 deleterious(0) probably_damaging(0.993) TCGA-YL-A8S9-01 1 155173034 155173034 G A THBS3 Missense_Mutation p.R246W 0.32 deleterious(0) probably_damaging(0.953) TCGA-YL-A8S9-01 1 29638247 29638247 C T PTPRU Silent p.V1026V 0.36 TCGA-YL-A8S9-01 20 32441333 32441333 G C CHMP4B Missense_Mutation p.M214I 0.59 tolerated(0.16) benign(0.024) TCGA-YL-A8S9-01 22 45133191 45133191 G C PRR5 3'UTR 0.46 TCGA-YL-A8S9-01 2 175962238 175962238 C A ATF2 Missense_Mutation p.R304S 0.47 tolerated(0.81) benign(0.006) TCGA-YL-A8S9-01 2 182339937 182339937 C A ITGA4 Missense_Mutation p.L160I 0.44 deleterious(0) probably_damaging(0.997) TCGA-YL-A8S9-01 2 225698898 225698898 T A DOCK10 Missense_Mutation p.N978I 0.48 tolerated(0.05) probably_damaging(0.999) TCGA-YL-A8S9-01 2 89277991 89277991 A T IGKV3-7 Nonsense_Mutation p.L115* 0.40 TCGA-YL-A8S9-01 3 120976076 120976076 G A STXBP5L Silent p.P576P 0.06 TCGA-YL-A8S9-01 3 50114565 50114567 AAG - RBM6 Missense_Mutation 0.37 TCGA-YL-A8S9-01 4 25673235 25673235 G A SLC34A2 Missense_Mutation p.V314I 0.46 tolerated(0.2) benign(0.003) TCGA-YL-A8S9-01 5 139907827 139907827 C A ANKHD1 Missense_Mutation p.P1766T 0.41 probably_damaging(0.997) TCGA-YL-A8S9-01 6 146625847 146625847 G C GRM1 Missense_Mutation p.D351H 0.46 deleterious(0) probably_damaging(0.988) TCGA-YL-A8S9-01 7 114292293 114292293 G A FOXP2 Missense_Mutation p.S402N 0.08 deleterious(0) unknown(0) TCGA-YL-A8S9-01 9 114521570 114521570 T C C9orf84 Intron 0.39 TCGA-YL-A8S9-01 X 128927070 128927070 C A SASH3 Silent p.R303R 1.00 TCGA-YL-A8SA-01 11 64940198 64940198 G A SPDYC Missense_Mutation p.R187Q 0.44 tolerated(0.07) possibly_damaging(0.826) TCGA-YL-A8SA-01 11 65620244 65620244 C A SNX32 Silent p.S352S 0.33 TCGA-YL-A8SA-01 14 39769118 39769118 A G CTAGE5 Silent p.K246K 0.46 TCGA-YL-A8SA-01 14 51560842 51560842 T A TRIM9 Silent p.L272L 0.40 TCGA-YL-A8SA-01 17 28434998 28434998 T C EFCAB5 Missense_Mutation p.Y1490H 0.40 tolerated_low_confidence(0.49) benign(0.066) TCGA-YL-A8SA-01 19 13029100 13029100 C T SYCE2 Missense_Mutation p.E23K 0.20 deleterious_low_confidence(0.01) benign(0.385) TCGA-YL-A8SA-01 19 20728085 20728085 G A ZNF737 Silent p.S308S 0.33 TCGA-YL-A8SA-01 19 22942458 22942458 A T ZNF99 Missense_Mutation p.F85I 0.43 tolerated(0.2) benign(0.088) TCGA-YL-A8SA-01 19 9087741 9087741 G A MUC16 Silent p.S1358S 0.42 TCGA-YL-A8SA-01 1 152323407 152323407 C A FLG2 Missense_Mutation p.Q2285H 0.42 benign(0.003) TCGA-YL-A8SA-01 1 152671573 152671573 G A LCE2A Missense_Mutation p.G66S 0.06 tolerated(0.34) unknown(0) TCGA-YL-A8SA-01 1 35227197 35227197 G A GJB4 Silent p.P114P 0.21 TCGA-YL-A8SA-01 1 35650018 35650022 AAAAC - SFPQ 3'UTR 0.39 TCGA-YL-A8SA-01 21 46330685 46330685 G A ITGB2 Missense_Mutation p.R5C 0.25 deleterious(0) unknown(0) TCGA-YL-A8SA-01 2 166165198 166165198 A - SCN2A Frame_Shift_Del p.T167Lfs*15 0.19 TCGA-YL-A8SA-01 2 175213457 175213457 T G CIR1 Missense_Mutation p.K374T 0.65 tolerated_low_confidence(0.12) possibly_damaging(0.719) TCGA-YL-A8SA-01 2 27804461 27804461 C A C2orf16 Silent p.S1674S 0.40 TCGA-YL-A8SA-01 2 37284597 37284597 G A HEATR5B Silent p.L696L 0.32 TCGA-YL-A8SA-01 3 127327355 127327355 A G MCM2 Missense_Mutation p.E411G 0.42 deleterious(0) possibly_damaging(0.611) TCGA-YL-A8SA-01 3 15736275 15736275 T A ANKRD28 Nonsense_Mutation p.R548* 0.44 TCGA-YL-A8SA-01 3 183888412 183888412 G A DVL3 Missense_Mutation p.A674T 0.41 tolerated(0.6) possibly_damaging(0.798) TCGA-YL-A8SA-01 4 115767000 115767000 G C NDST4 Missense_Mutation p.D698E 0.25 tolerated(0.2) probably_damaging(0.939) TCGA-YL-A8SA-01 4 5642366 5642366 G A EVC2 Missense_Mutation p.R449W 0.04 deleterious(0) probably_damaging(0.984) TCGA-YL-A8SA-01 5 140432268 140432268 G T PCDHB1 Missense_Mutation p.V405F 0.37 deleterious(0.01) possibly_damaging(0.876) TCGA-YL-A8SA-01 5 147505314 147505314 T C SPINK5 Missense_Mutation p.I953T 0.40 tolerated(0.22) benign(0.016) TCGA-YL-A8SA-01 5 158696066 158696066 T G UBLCP1 Missense_Mutation p.L48R 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-YL-A8SA-01 6 121642938 121642938 T A TBC1D32 Missense_Mutation p.Y53F 0.39 deleterious(0) probably_damaging(0.979) TCGA-YL-A8SA-01 6 33374066 33374066 C A KIFC1 Missense_Mutation p.L544I 0.39 deleterious(0) probably_damaging(1) TCGA-YL-A8SA-01 7 136936041 136936041 G A PTN Silent p.A129A 0.37 TCGA-YL-A8SA-01 7 34192862 34192862 C A BMPER Missense_Mutation p.P679T 0.31 deleterious(0.01) possibly_damaging(0.873) TCGA-YL-A8SA-01 9 138518009 138518009 C T GLT6D1 Missense_Mutation p.V55I 0.32 tolerated(0.58) benign(0.008) TCGA-YL-A8SA-01 9 71851082 71851082 G A TJP2 Missense_Mutation p.G671D 0.06 deleterious(0) probably_damaging(1) TCGA-YL-A8SA-01 9 86616312 86616312 G T RMI1 Silent p.L137L 0.42 TCGA-YL-A8SA-01 9 90535986 90535986 G A SPATA31C1 RNA 0.03 TCGA-YL-A8SA-01 9 94843196 94843196 C T SPTLC1 Missense_Mutation p.A104T 0.29 deleterious(0) probably_damaging(1) TCGA-YL-A8SA-01 X 130217750 130217750 T A ARHGAP36 Missense_Mutation p.L121Q 0.72 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SA-01 X 69370149 69370149 A T IGBP1 Missense_Mutation p.Q283L 0.36 deleterious(0) possibly_damaging(0.598) TCGA-YL-A8SB-01 10 26785235 26785235 T C APBB1IP Silent p.S25S 0.06 TCGA-YL-A8SB-01 10 81113578 81113578 G A PPIF Missense_Mutation p.D202N 0.13 tolerated_low_confidence(0.15) probably_damaging(0.926) TCGA-YL-A8SB-01 11 76980034 76980034 A C GDPD4 Missense_Mutation p.C187G 0.36 deleterious(0) probably_damaging(1) TCGA-YL-A8SB-01 12 120634540 120634540 C G RPLP0 3'UTR 0.19 TCGA-YL-A8SB-01 12 49434822 49434822 A - KMT2D Frame_Shift_Del p.F2244Sfs*20 0.19 TCGA-YL-A8SB-01 12 53494618 53494618 G A IGFBP6 Missense_Mutation p.A153T 0.16 tolerated(0.19) benign(0.101) TCGA-YL-A8SB-01 14 95562162 95562162 C T DICER1 Missense_Mutation p.D1699N 0.10 deleterious(0) benign(0.26) TCGA-YL-A8SB-01 15 59500983 59500983 C T MYO1E Missense_Mutation p.G476E 0.18 deleterious(0) probably_damaging(1) TCGA-YL-A8SB-01 15 66215182 66215182 G A MEGF11 Nonsense_Mutation p.R601* 0.08 TCGA-YL-A8SB-01 16 83636156 83636156 T A CDH13 Missense_Mutation p.I400N 0.23 deleterious(0) probably_damaging(0.983) TCGA-YL-A8SB-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.37 deleterious(0) probably_damaging(1) TCGA-YL-A8SB-01 18 21705426 21705426 G T TTC39C Silent p.A444A 0.10 TCGA-YL-A8SB-01 19 15083615 15083616 GC - SLC1A6 Frame_Shift_Del p.R36Hfs*140 0.24 TCGA-YL-A8SB-01 19 42754713 42754713 A - ERF Frame_Shift_Del p.F9Lfs*68 0.45 TCGA-YL-A8SB-01 1 110774894 110774894 G T KCNC4 Missense_Mutation p.C624F 0.20 deleterious_low_confidence(0.04) benign(0) TCGA-YL-A8SB-01 1 152749011 152749012 - CAGCTCTGGGGGCTGCTG LCE1F In_Frame_Ins p.S56_G57insSGGCCS 0.11 TCGA-YL-A8SB-01 1 158325904 158325904 C A CD1E Intron 0.16 TCGA-YL-A8SB-01 1 18809302 18809302 G C KLHDC7A Silent p.L609L 0.31 TCGA-YL-A8SB-01 1 215342562 215342562 C T KCNK2 Missense_Mutation p.R166C 0.21 deleterious(0.01) benign(0.007) TCGA-YL-A8SB-01 1 35658709 35658709 G A SFPQ 5'UTR 0.36 TCGA-YL-A8SB-01 22 21800707 21800707 C T HIC2 Missense_Mutation p.S508L 0.38 deleterious(0) benign(0.291) TCGA-YL-A8SB-01 22 30780470 30780470 G A RNF215 Missense_Mutation p.T201M 0.17 deleterious(0.03) benign(0.047) TCGA-YL-A8SB-01 2 113670570 113670570 T C IL37 5'UTR 0.20 TCGA-YL-A8SB-01 2 201499584 201499584 A G AOX1 Silent p.G764G 0.05 TCGA-YL-A8SB-01 2 202025331 202025331 G A CFLAR Missense_Mutation p.V324M 0.16 tolerated(0.06) probably_damaging(0.951) TCGA-YL-A8SB-01 3 48573816 48573816 A G PFKFB4 Missense_Mutation p.I238T 0.20 benign(0.208) TCGA-YL-A8SB-01 4 156135918 156135918 T A NPY2R Missense_Mutation p.V276E 0.17 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SB-01 4 57856954 57856954 G T POLR2B Missense_Mutation p.D45Y 0.24 deleterious(0) probably_damaging(0.996) TCGA-YL-A8SB-01 4 69535901 69535901 A T UGT2B15 Missense_Mutation p.F146I 0.04 deleterious(0) possibly_damaging(0.893) TCGA-YL-A8SB-01 5 178392554 178392554 T G ZNF454 Silent p.P383P 0.14 TCGA-YL-A8SB-01 6 132021829 132021829 C T OR2A4 Missense_Mutation p.R238H 0.07 deleterious(0) benign(0.011) TCGA-YL-A8SB-01 6 38877389 38877389 G T DNAH8 Silent p.L2986L 0.06 TCGA-YL-A8SB-01 6 55684508 55684508 C A BMP5 Nonsense_Mutation p.E210* 0.21 TCGA-YL-A8SB-01 8 144378438 144378438 G A ZNF696 Missense_Mutation p.R198Q 0.17 tolerated(0.42) benign(0.409) TCGA-YL-A8SB-01 9 106858474 106858474 G C SMC2 Missense_Mutation p.A72P 0.21 deleterious(0) probably_damaging(0.996) TCGA-YL-A8SC-01 10 118460629 118460629 C T HSPA12A Missense_Mutation p.G89E 0.26 deleterious(0) possibly_damaging(0.833) TCGA-YL-A8SC-01 11 108224576 108224576 G A ATM Missense_Mutation p.G2919S 0.21 deleterious(0) probably_damaging(1) TCGA-YL-A8SC-01 11 108224578 108224578 C G ATM Silent p.G2919G 0.21 TCGA-YL-A8SC-01 11 122650305 122650305 C T UBASH3B Missense_Mutation p.T168M 0.48 deleterious(0) possibly_damaging(0.73) TCGA-YL-A8SC-01 11 65302785 65302785 G T SCYL1 Nonsense_Mutation p.E440* 0.20 TCGA-YL-A8SC-01 12 48866491 48866491 C T ANP32D Missense_Mutation p.T15M 0.30 deleterious(0.04) benign(0.024) TCGA-YL-A8SC-01 12 57398256 57398256 G A ZBTB39 Missense_Mutation p.S149L 0.11 tolerated(0.07) benign(0.081) TCGA-YL-A8SC-01 14 94008906 94008906 T A UNC79 Missense_Mutation p.M363K 0.11 tolerated(0.07) probably_damaging(0.983) TCGA-YL-A8SC-01 15 41099524 41099524 C T ZFYVE19 5'UTR 0.30 TCGA-YL-A8SC-01 15 59186349 59186349 T A SLTM Missense_Mutation p.D474V 0.26 deleterious(0) unknown(0) TCGA-YL-A8SC-01 15 59186350 59186350 C T SLTM Missense_Mutation p.D474N 0.27 deleterious(0.02) unknown(0) TCGA-YL-A8SC-01 15 75501073 75501073 G A C15orf39 Missense_Mutation p.R895H 0.25 deleterious(0) probably_damaging(0.998) TCGA-YL-A8SC-01 16 55364374 55364374 A G IRX6 3'UTR 0.36 TCGA-YL-A8SC-01 16 58030795 58030795 G A ZNF319 Missense_Mutation p.R459C 0.27 deleterious(0) probably_damaging(0.976) TCGA-YL-A8SC-01 16 65022215 65022215 C T CDH11 Missense_Mutation p.V282I 0.10 deleterious(0.03) benign(0.004) TCGA-YL-A8SC-01 17 18651256 18651256 C T FBXW10 Missense_Mutation p.L170F 0.12 tolerated(0.21) benign(0.013) TCGA-YL-A8SC-01 17 28808252 28808252 T A GOSR1 Missense_Mutation p.S41R 0.23 tolerated(0.47) benign(0.001) TCGA-YL-A8SC-01 17 46002397 46002397 G A SP2 Silent p.Q495Q 0.25 TCGA-YL-A8SC-01 17 79496148 79496148 C T FSCN2 Silent p.D197D 0.30 TCGA-YL-A8SC-01 19 46094786 46094786 C A GPR4 Silent p.V113V 0.09 TCGA-YL-A8SC-01 19 54745451 54745451 C A LILRA6 Splice_Site p.X220_splice 0.23 TCGA-YL-A8SC-01 1 149871937 149871937 C T BOLA1 Missense_Mutation p.R109W 0.32 tolerated(0.1) possibly_damaging(0.901) TCGA-YL-A8SC-01 1 158259858 158259858 C A CD1C Missense_Mutation p.L2M 0.29 deleterious(0) unknown(0) TCGA-YL-A8SC-01 1 158450659 158450659 T G OR10R2 Missense_Mutation p.L331R 0.27 deleterious(0) benign(0.005) TCGA-YL-A8SC-01 1 158450686 158450686 C A OR10R2 3'Flank 0.31 TCGA-YL-A8SC-01 1 32674910 32674910 G A DCDC2B Silent p.K72K 0.28 TCGA-YL-A8SC-01 1 44877961 44877961 C T RNF220 Silent p.N64N 0.24 TCGA-YL-A8SC-01 20 62597977 62597977 C T ZNF512B Missense_Mutation p.R184Q 0.06 deleterious_low_confidence(0.05) benign(0.425) TCGA-YL-A8SC-01 21 47615597 47615597 G A LSS Nonsense_Mutation p.R604* 0.05 TCGA-YL-A8SC-01 2 10915197 10915197 T A ATP6V1C2 Nonsense_Mutation p.Y275* 0.27 TCGA-YL-A8SC-01 2 120125149 120125149 T G DBI Intron 0.24 TCGA-YL-A8SC-01 2 140995791 140995791 A G LRP1B Missense_Mutation p.M4497T 0.21 benign(0.042) TCGA-YL-A8SC-01 2 242373670 242373670 T G FARP2 Missense_Mutation p.L322R 0.07 deleterious(0) probably_damaging(0.996) TCGA-YL-A8SC-01 2 25972970 25972979 ATCCTTTGGG - ASXL2 Frame_Shift_Del p.C482Wfs*37 0.29 TCGA-YL-A8SC-01 2 56420172 56420172 G A CCDC85A Silent p.P279P 0.31 TCGA-YL-A8SC-01 2 88327466 88327466 G C KRCC1 Missense_Mutation p.T206S 0.30 tolerated(0.27) benign(0.342) TCGA-YL-A8SC-01 3 129290379 129290379 G A PLXND1 Silent p.A1103A 0.25 TCGA-YL-A8SC-01 3 184910915 184910915 C T EHHADH Missense_Mutation p.R424H 0.24 tolerated(0.11) benign(0.343) TCGA-YL-A8SC-01 3 194080233 194080233 C A LRRC15 Missense_Mutation p.D520Y 0.27 deleterious(0.01) possibly_damaging(0.736) TCGA-YL-A8SC-01 4 1742673 1742673 G A TACC3 Missense_Mutation p.R728H 0.07 deleterious(0) possibly_damaging(0.507) TCGA-YL-A8SC-01 4 56471442 56471442 G A NMU Silent p.D145D 0.17 TCGA-YL-A8SC-01 5 130841188 130841188 C T RAPGEF6 Missense_Mutation p.G324S 0.28 deleterious(0) probably_damaging(1) TCGA-YL-A8SC-01 5 65077143 65077143 T C NLN Silent p.Y239Y 0.18 TCGA-YL-A8SC-01 6 36767773 36767773 G A CPNE5 Silent p.F86F 0.19 TCGA-YL-A8SC-01 7 100685726 100685726 G T MUC17 Missense_Mutation p.V3677L 0.31 benign(0.097) TCGA-YL-A8SC-01 7 151093079 151093079 C T WDR86 Missense_Mutation p.S170N 0.17 deleterious(0) possibly_damaging(0.86) TCGA-YL-A8SC-01 7 44874154 44874154 G C H2AFV Missense_Mutation p.I111M 0.12 deleterious(0.01) benign(0.407) TCGA-YL-A8SC-01 7 86537841 86537841 G A KIAA1324L Missense_Mutation p.T793I 0.36 tolerated(0.06) benign(0.005) TCGA-YL-A8SC-01 8 110980379 110980379 G A KCNV1 Nonsense_Mutation p.R481* 0.08 TCGA-YL-A8SC-01 9 33057683 33057683 A G SMU1 Silent p.F260F 0.03 TCGA-YL-A8SC-01 9 95485027 95485027 G A BICD2 Missense_Mutation p.R173W 0.26 deleterious(0) probably_damaging(0.996) TCGA-YL-A8SF-01 10 108923947 108923947 G A SORCS1 Missense_Mutation p.A113V 0.33 tolerated_low_confidence(0.32) benign(0.011) TCGA-YL-A8SF-01 11 118773329 118773329 G A BCL9L Missense_Mutation p.P375S 0.26 benign(0.021) TCGA-YL-A8SF-01 13 99452702 99452702 C T DOCK9 Missense_Mutation p.R1933H 0.47 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SF-01 14 74042184 74042184 T C ACOT2 Silent p.G473G 0.32 TCGA-YL-A8SF-01 15 65496880 65496880 G C CILP Missense_Mutation p.D215E 0.43 tolerated(0.68) benign(0.005) TCGA-YL-A8SF-01 16 23080009 23080009 C A USP31 Missense_Mutation p.R1139S 0.38 tolerated_low_confidence(0.26) benign(0.114) TCGA-YL-A8SF-01 19 50123646 50123646 G A PRR12 Silent p.A1845A 0.33 TCGA-YL-A8SF-01 1 237617790 237617790 C T RYR2 Silent p.H464H 0.31 TCGA-YL-A8SF-01 1 75602926 75602926 G A LHX8 Missense_Mutation p.V83M 0.46 deleterious(0.04) possibly_damaging(0.905) TCGA-YL-A8SF-01 2 32093370 32093370 G C MEMO1 3'UTR 0.46 TCGA-YL-A8SF-01 3 179066620 179066620 T A MFN1 Intron 0.37 TCGA-YL-A8SF-01 3 39228269 39228269 C T XIRP1 Missense_Mutation p.V890M 0.55 tolerated(0.14) benign(0.042) TCGA-YL-A8SF-01 3 49062390 49062390 G A IMPDH2 Missense_Mutation p.R412C 0.27 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SF-01 3 64145666 64145666 C T PRICKLE2 Missense_Mutation p.G116R 0.30 deleterious(0) probably_damaging(0.992) TCGA-YL-A8SF-01 5 56778450 56778450 G A ACTBL2 Missense_Mutation p.R29W 0.35 deleterious_low_confidence(0.02) probably_damaging(0.92) TCGA-YL-A8SF-01 6 165801923 165801923 G A PDE10A Missense_Mutation p.A559V 0.35 deleterious(0.03) probably_damaging(0.99) TCGA-YL-A8SF-01 6 44387289 44387289 G A CDC5L Missense_Mutation p.R399Q 0.35 tolerated(0.18) benign(0.036) TCGA-YL-A8SF-01 7 129912964 129912964 A C CPA2 Missense_Mutation p.S145R 0.20 deleterious(0.04) benign(0.152) TCGA-YL-A8SF-01 7 76112081 76112081 A G DTX2 Silent p.Q175Q 0.55 TCGA-YL-A8SF-01 9 34490062 34490062 C T DNAI1 Silent p.D147D 0.44 TCGA-YL-A8SH-01 10 118352048 118352048 T A PNLIPRP1 Missense_Mutation p.C109S 0.29 deleterious(0) probably_damaging(0.937) TCGA-YL-A8SH-01 10 52573721 52573721 C G A1CF Missense_Mutation p.G415R 0.30 tolerated(0.28) possibly_damaging(0.715) TCGA-YL-A8SH-01 10 68687766 68687766 T G LRRTM3 Missense_Mutation p.S364R 0.10 tolerated(0.59) benign(0.009) TCGA-YL-A8SH-01 10 73521465 73521465 C T C10orf54 Missense_Mutation p.R134H 0.14 tolerated(0.59) benign(0.003) TCGA-YL-A8SH-01 11 108180935 108180935 T - ATM Frame_Shift_Del p.Y1938Ifs*2 0.22 TCGA-YL-A8SH-01 11 46924428 46924428 T G LRP4 Silent p.A35A 0.31 TCGA-YL-A8SH-01 12 115118775 115118775 T A TBX3 Missense_Mutation p.D189V 0.08 deleterious(0) probably_damaging(1) TCGA-YL-A8SH-01 13 28562733 28562733 G A URAD Silent p.F14F 0.20 TCGA-YL-A8SH-01 14 24026130 24026130 G A THTPA Missense_Mutation p.R55Q 0.29 deleterious(0.01) probably_damaging(1) TCGA-YL-A8SH-01 14 35253097 35253097 T C BAZ1A Missense_Mutation p.K623R 0.15 deleterious(0.01) possibly_damaging(0.899) TCGA-YL-A8SH-01 14 94526642 94526642 G C DDX24 Missense_Mutation p.T572S 0.39 tolerated(0.05) benign(0.118) TCGA-YL-A8SH-01 15 57484403 57484403 A G TCF12 Silent p.L146L 0.27 TCGA-YL-A8SH-01 17 39316834 39316834 C T KRTAP4-4 Missense_Mutation p.R37H 0.33 unknown(0) TCGA-YL-A8SH-01 17 47696644 47696644 A C SPOP Missense_Mutation p.F102V 0.26 tolerated(0.11) probably_damaging(1) TCGA-YL-A8SH-01 17 5035635 5035635 C T USP6 Intron 0.32 TCGA-YL-A8SH-01 19 45316773 45316773 G A BCAM Missense_Mutation p.R227H 0.07 tolerated(0.48) benign(0) TCGA-YL-A8SH-01 19 49490530 49490530 T C GYS1 Missense_Mutation p.N138S 0.40 tolerated(0.45) benign(0.001) TCGA-YL-A8SH-01 19 5844000 5844000 A T FUT3 Missense_Mutation p.F284Y 0.12 deleterious(0.04) probably_damaging(0.975) TCGA-YL-A8SH-01 19 8190851 8190851 C T FBN3 Missense_Mutation p.V886I 0.20 tolerated(0.2) benign(0.003) TCGA-YL-A8SH-01 1 149883419 149883419 C T SV2A Missense_Mutation p.A246T 0.31 deleterious(0) possibly_damaging(0.858) TCGA-YL-A8SH-01 1 216246603 216246603 C T USH2A Missense_Mutation p.G1871D 0.65 probably_damaging(0.995) TCGA-YL-A8SH-01 20 46267838 46267838 A G NCOA3 Missense_Mutation p.S867G 0.29 tolerated(0.38) benign(0.001) TCGA-YL-A8SH-01 22 29904508 29904508 C A THOC5 Missense_Mutation p.G664C 0.18 deleterious(0) benign(0.114) TCGA-YL-A8SH-01 22 50582666 50582666 C T MOV10L1 Silent p.F833F 0.36 TCGA-YL-A8SH-01 2 119726816 119726816 G A MARCO Missense_Mutation p.A60T 0.28 tolerated(0.45) benign(0.189) TCGA-YL-A8SH-01 2 122007205 122007205 C T TFCP2L1 Missense_Mutation p.R78Q 0.34 tolerated(0.09) benign(0.019) TCGA-YL-A8SH-01 2 89265896 89265896 C T IGKV1-6 Missense_Mutation p.G79E 0.24 deleterious(0.01) benign(0.414) TCGA-YL-A8SH-01 5 139232068 139232068 G C NRG2 Missense_Mutation p.S498C 0.28 tolerated(0.16) probably_damaging(0.976) TCGA-YL-A8SH-01 5 140772818 140772818 G A PCDHGA8 Silent p.A146A 0.37 TCGA-YL-A8SH-01 5 52344214 52344214 C A ITGA2 Missense_Mutation p.Q137K 0.68 tolerated(0.56) benign(0.057) TCGA-YL-A8SH-01 6 132874616 132874616 C T TAAR8 Missense_Mutation p.T262M 0.34 deleterious(0.03) benign(0.223) TCGA-YL-A8SH-01 6 36891198 36891198 C A C6orf89 Missense_Mutation p.T349N 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-YL-A8SH-01 7 107626753 107626753 C A LAMB1 Missense_Mutation p.W160L 0.25 deleterious(0) probably_damaging(1) TCGA-YL-A8SH-01 7 81359092 81359092 T C HGF Missense_Mutation p.D290G 0.33 tolerated(0.38) benign(0.012) TCGA-YL-A8SH-01 8 105509398 105509398 T C LRP12 Missense_Mutation p.N461S 0.22 deleterious(0.02) probably_damaging(0.981) TCGA-YL-A8SH-01 8 37794525 37794525 C A GOT1L1 Missense_Mutation p.K190N 0.31 tolerated(0.46) benign(0.009) TCGA-YL-A8SH-01 9 131027885 131027885 C T GOLGA2 Silent p.T277T 0.20 TCGA-YL-A8SH-01 X 153137798 153137798 G A L1CAM Missense_Mutation p.T70M 0.35 deleterious(0.04) benign(0.21) TCGA-YL-A8SH-01 Y 21868432 21868432 C A KDM5D Missense_Mutation p.M1388I 0.30 tolerated(0.05) benign(0.003) TCGA-YL-A8SI-01 10 82036308 82036308 C G MAT1A Missense_Mutation p.V198L 0.07 tolerated(1) benign(0) TCGA-YL-A8SI-01 10 85981739 85981739 G A LRIT2 Silent p.D530D 0.06 TCGA-YL-A8SI-01 11 60201358 60201358 A T MS4A5 Missense_Mutation p.S154C 0.16 deleterious(0.05) possibly_damaging(0.905) TCGA-YL-A8SI-01 12 49434129 49434129 G - KMT2D Frame_Shift_Del p.P2475Lfs*10 0.22 TCGA-YL-A8SI-01 14 36840970 36840970 G A DPPA3P2 RNA 0.09 TCGA-YL-A8SI-01 15 34093025 34093025 G C RYR3 Silent p.V3295V 0.16 TCGA-YL-A8SI-01 18 9577161 9577161 C A PPP4R1 Missense_Mutation p.G316V 0.12 deleterious(0) probably_damaging(0.931) TCGA-YL-A8SI-01 19 9869005 9869005 C T ZNF846 Missense_Mutation p.G250R 0.10 tolerated(0.27) probably_damaging(0.991) TCGA-YL-A8SI-01 1 103405948 103405948 G A COL11A1 Nonsense_Mutation p.Q1107* 0.21 TCGA-YL-A8SI-01 1 120468195 120468195 G A NOTCH2 Missense_Mutation p.T1415M 0.06 tolerated(0.12) benign(0.002) TCGA-YL-A8SI-01 1 152327338 152327338 C T FLG2 Missense_Mutation p.G975E 0.03 unknown(0) TCGA-YL-A8SI-01 1 53676058 53676058 G A CPT2 Missense_Mutation p.D238N 0.12 tolerated(0.31) benign(0.045) TCGA-YL-A8SI-01 1 75038795 75038795 C T C1orf173 Missense_Mutation p.A867T 0.06 tolerated(0.08) benign(0.011) TCGA-YL-A8SI-01 2 105900818 105900818 A G TGFBRAP1 Missense_Mutation p.I359T 0.07 deleterious(0) probably_damaging(0.98) TCGA-YL-A8SI-01 2 160833917 160833917 G A PLA2R1 Missense_Mutation p.S760L 0.06 deleterious(0) probably_damaging(0.934) TCGA-YL-A8SI-01 2 89986987 89986987 A T IGKV2D-29 Missense_Mutation p.S90C 0.08 deleterious(0) probably_damaging(0.963) TCGA-YL-A8SI-01 4 114279456 114279456 G A ANK2 Missense_Mutation p.V3228M 0.12 benign(0.005) TCGA-YL-A8SI-01 4 149356412 149356412 G C NR3C2 Missense_Mutation p.S534C 0.09 deleterious(0.02) possibly_damaging(0.869) TCGA-YL-A8SI-01 4 47455150 47455150 C T COMMD8 Missense_Mutation p.V153I 0.10 tolerated(0.57) benign(0.017) TCGA-YL-A8SI-01 4 6600070 6600070 C T MAN2B2 Missense_Mutation p.A465V 0.24 tolerated(0.56) benign(0.002) TCGA-YL-A8SI-01 5 56168713 56168713 G A MAP3K1 Missense_Mutation p.V523I 0.08 tolerated(0.49) benign(0) TCGA-YL-A8SI-01 6 84650235 84650235 A G CYB5R4 Missense_Mutation p.K421E 0.09 tolerated(0.11) possibly_damaging(0.785) TCGA-YL-A8SI-01 8 72973925 72973925 C T TRPA1 Silent p.S293S 0.09 TCGA-YL-A8SI-01 9 102590448 102590448 C A NR4A3 Missense_Mutation p.L53I 0.11 tolerated(0.12) benign(0.423) TCGA-YL-A8SI-01 9 102590458 102590458 C T NR4A3 Missense_Mutation p.T56I 0.07 tolerated(0.09) benign(0.052) TCGA-YL-A8SI-01 X 103420367 103420367 A G FAM199X Silent p.S87S 0.09 TCGA-YL-A8SJ-01 10 115364399 115364399 C T NRAP Nonsense_Mutation p.W1399* 0.43 TCGA-YL-A8SJ-01 10 134598510 134598510 G A NKX6-2 Silent p.D248D 0.10 TCGA-YL-A8SJ-01 11 115109289 115109289 C T CADM1 Missense_Mutation p.E119K 0.15 deleterious(0) probably_damaging(0.992) TCGA-YL-A8SJ-01 11 78380123 78380123 C A TENM4 Missense_Mutation p.V2423L 0.28 deleterious(0.03) benign(0.024) TCGA-YL-A8SJ-01 12 103700092 103700092 C T C12orf42 Silent p.A97A 0.15 TCGA-YL-A8SJ-01 12 26596569 26596569 A C ITPR2 Missense_Mutation p.N2119K 0.39 deleterious(0.02) possibly_damaging(0.689) TCGA-YL-A8SJ-01 13 99362008 99362008 G A SLC15A1 Silent p.P322P 0.28 TCGA-YL-A8SJ-01 15 44166604 44166604 C T FRMD5 Missense_Mutation p.G398R 0.19 tolerated(0.49) benign(0.157) TCGA-YL-A8SJ-01 16 30732587 30732587 C T SRCAP Missense_Mutation p.P1111S 0.30 unknown(0) TCGA-YL-A8SJ-01 17 18219934 18219934 G A SMCR8 Silent p.Q277Q 0.21 TCGA-YL-A8SJ-01 17 73809210 73809210 C T UNK Missense_Mutation p.P225L 0.38 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SJ-01 17 7578435 7578436 - AGCA TP53 Frame_Shift_Ins p.Q165Hfs*17 0.32 TCGA-YL-A8SJ-01 17 76457691 76457691 C T DNAH17 Missense_Mutation p.E3078K 0.35 benign(0.143) TCGA-YL-A8SJ-01 17 7983166 7983166 A T ALOX12B Missense_Mutation p.I283N 0.29 deleterious(0) possibly_damaging(0.664) TCGA-YL-A8SJ-01 18 59894681 59894681 A G KIAA1468 Missense_Mutation p.I340V 0.11 tolerated(0.62) benign(0.001) TCGA-YL-A8SJ-01 1 248004453 248004453 G C OR11L1 Missense_Mutation p.T249S 0.21 tolerated(0.16) benign(0.062) TCGA-YL-A8SJ-01 20 2375142 2375142 G A TGM6 Missense_Mutation p.A18T 0.30 tolerated(0.56) benign(0.045) TCGA-YL-A8SJ-01 20 34240454 34240454 A G RBM12 Silent p.L931L 0.12 TCGA-YL-A8SJ-01 22 50581567 50581567 G T MOV10L1 Missense_Mutation p.G759C 0.05 deleterious(0) probably_damaging(0.986) TCGA-YL-A8SJ-01 2 113535636 113535636 G A IL1A Silent p.T181T 0.17 TCGA-YL-A8SJ-01 2 120005702 120005702 G A STEAP3 Missense_Mutation p.A324T 0.10 tolerated(0.45) benign(0.01) TCGA-YL-A8SJ-01 2 17830730 17830730 C T VSNL1 Silent p.F72F 0.08 TCGA-YL-A8SJ-01 2 28752252 28752252 G T PLB1 Missense_Mutation p.V132F 0.13 tolerated(0.12) benign(0.028) TCGA-YL-A8SJ-01 3 157820524 157820524 G A SHOX2 Silent p.D190D 0.08 TCGA-YL-A8SJ-01 3 16237352 16237352 C T GALNT15 Missense_Mutation p.R209W 0.06 deleterious(0) probably_damaging(1) TCGA-YL-A8SJ-01 3 164714349 164714349 T C SI Missense_Mutation p.R1556G 0.27 deleterious(0) probably_damaging(1) TCGA-YL-A8SJ-01 4 85656271 85656271 C A WDFY3 Missense_Mutation p.E2306D 0.31 tolerated(0.21) benign(0.006) TCGA-YL-A8SJ-01 5 112437491 112437491 C T MCC Missense_Mutation p.R448Q 0.10 tolerated(0.07) probably_damaging(0.975) TCGA-YL-A8SJ-01 6 146755853 146755853 C T GRM1 Missense_Mutation p.S1169L 0.31 tolerated_low_confidence(0.06) probably_damaging(0.976) TCGA-YL-A8SJ-01 6 152847287 152847287 G A SYNE1 Silent p.D51D 0.23 TCGA-YL-A8SJ-01 6 155597385 155597385 G A CLDN20 Missense_Mutation p.G178S 0.23 deleterious(0.02) possibly_damaging(0.613) TCGA-YL-A8SJ-01 6 31084297 31084297 C T CDSN Silent p.S365S 0.32 TCGA-YL-A8SJ-01 7 98257788 98257788 C T NPTX2 Silent p.R381R 0.33 TCGA-YL-A8SJ-01 9 139313550 139313550 G A PMPCA Missense_Mutation p.V419M 0.40 deleterious(0.02) possibly_damaging(0.776) TCGA-YL-A8SJ-01 X 39933065 39933065 G A BCOR Missense_Mutation p.P512S 0.15 tolerated(0.1) possibly_damaging(0.889) TCGA-YL-A8SJ-01 X 54989723 54989723 G A PFKFB1 Nonsense_Mutation p.R64* 0.25 TCGA-YL-A8SK-01 10 134017305 134017305 G - DPYSL4 Frame_Shift_Del p.V503Sfs*4 0.24 TCGA-YL-A8SK-01 10 79571813 79571813 G A DLG5 Silent p.F1397F 0.17 TCGA-YL-A8SK-01 10 81065297 81065297 G A ZMIZ1 Missense_Mutation p.A788T 0.16 probably_damaging(0.96) TCGA-YL-A8SK-01 10 85992631 85992631 C T LRIT1 Silent p.T308T 0.23 TCGA-YL-A8SK-01 10 99376049 99376049 A T MORN4 Missense_Mutation p.S138T 0.08 deleterious(0.01) benign(0.153) TCGA-YL-A8SK-01 11 18303529 18303529 G C HPS5 Missense_Mutation p.C1099W 0.19 deleterious(0) probably_damaging(1) TCGA-YL-A8SK-01 12 7048124 7048124 C G ATN1 Missense_Mutation p.R1000G 0.20 possibly_damaging(0.674) TCGA-YL-A8SK-01 12 91347894 91347894 C T CCER1 Missense_Mutation p.R209H 0.11 deleterious(0.02) probably_damaging(0.923) TCGA-YL-A8SK-01 14 24806111 24806111 G A RIPK3 Missense_Mutation p.P439L 0.28 deleterious(0.04) benign(0.059) TCGA-YL-A8SK-01 15 43701149 43701149 C T TP53BP1 Missense_Mutation p.R1849H 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-YL-A8SK-01 15 43817506 43817506 A G MAP1A Missense_Mutation p.I1279V 0.09 benign(0.002) TCGA-YL-A8SK-01 15 63908113 63908113 G T HERC1 Missense_Mutation p.P4650T 0.31 probably_damaging(1) TCGA-YL-A8SK-01 16 2121840 2121840 G T TSC2 Missense_Mutation p.G668W 0.36 deleterious(0) probably_damaging(0.987) TCGA-YL-A8SK-01 16 23116855 23116855 G C USP31 Missense_Mutation p.H332Q 0.08 tolerated(0.06) probably_damaging(0.949) TCGA-YL-A8SK-01 17 56274319 56274319 G A EPX Missense_Mutation p.R274H 0.05 deleterious(0) probably_damaging(0.998) TCGA-YL-A8SK-01 18 28992796 28992796 G A DSG4 Silent p.A806A 0.21 TCGA-YL-A8SK-01 18 72344424 72344424 C T ZNF407 Silent p.C483C 0.15 TCGA-YL-A8SK-01 19 14247269 14247269 C A ASF1B 5'UTR 0.25 TCGA-YL-A8SK-01 19 37619569 37619569 A G ZNF420 Missense_Mutation p.Y559C 0.06 deleterious(0) probably_damaging(0.936) TCGA-YL-A8SK-01 19 54265626 54265626 C T MIR519A2 RNA 0.18 TCGA-YL-A8SK-01 19 54721088 54721088 G T LILRB3 Silent p.S591S 0.21 TCGA-YL-A8SK-01 19 55112202 55112202 C T LILRA1 Missense_Mutation p.R464C 0.18 deleterious(0.01) benign(0.046) TCGA-YL-A8SK-01 19 55693512 55693512 C T PTPRH Missense_Mutation p.V1024M 0.21 probably_damaging(0.999) TCGA-YL-A8SK-01 19 57036932 57036932 G T ZNF471 Missense_Mutation p.S499I 0.26 deleterious(0.05) benign(0.313) TCGA-YL-A8SK-01 1 153362588 153362588 G T S100A8 Missense_Mutation p.H91Q 0.17 deleterious_low_confidence(0) benign(0.011) TCGA-YL-A8SK-01 1 41503177 41503177 G A SCMH1 Missense_Mutation p.S502F 0.22 tolerated(0.12) possibly_damaging(0.594) TCGA-YL-A8SK-01 1 90058514 90058514 G C LRRC8B Missense_Mutation p.R775P 0.22 tolerated(0.05) benign(0.003) TCGA-YL-A8SK-01 20 36627645 36627645 G A TTI1 Missense_Mutation p.S913L 0.18 deleterious(0.03) benign(0.207) TCGA-YL-A8SK-01 21 44433259 44433259 C T PKNOX1 Nonsense_Mutation p.R145* 0.16 TCGA-YL-A8SK-01 2 125547510 125547510 A G CNTNAP5 Silent p.L927L 0.24 TCGA-YL-A8SK-01 2 128186333 128186333 G - PROC Frame_Shift_Del p.G400Afs*21 0.14 TCGA-YL-A8SK-01 2 128917179 128917179 C T UGGT1 Missense_Mutation p.A816V 0.22 tolerated(0.09) benign(0.371) TCGA-YL-A8SK-01 3 118621499 118621499 G A IGSF11 Silent p.S388S 0.26 TCGA-YL-A8SK-01 4 6302392 6302392 G A WFS1 Silent p.K290K 0.41 TCGA-YL-A8SK-01 4 81884816 81884816 G A C4orf22 3'Flank 0.26 TCGA-YL-A8SK-01 5 137676941 137676941 G T FAM53C 5'UTR 0.25 TCGA-YL-A8SK-01 5 140810551 140810551 C T PCDHGA12 Silent p.F75F 0.20 TCGA-YL-A8SK-01 5 161984 161984 C T PLEKHG4B Silent p.S502S 0.27 TCGA-YL-A8SK-01 5 85915176 85915176 C T COX7C Missense_Mutation p.P28S 0.04 tolerated(0.05) probably_damaging(0.911) TCGA-YL-A8SK-01 5 95067675 95067675 G T RHOBTB3 Nonsense_Mutation p.E39* 0.07 TCGA-YL-A8SK-01 6 152453342 152453342 G A SYNE1 Missense_Mutation p.S8670F 0.21 possibly_damaging(0.883) TCGA-YL-A8SK-01 6 70071345 70071345 G A BAI3 Missense_Mutation p.D1394N 0.35 tolerated(0.4) benign(0.001) TCGA-YL-A8SK-01 8 145106648 145106648 C T OPLAH Silent p.S1234S 0.14 TCGA-YL-A8SK-01 9 135153581 135153581 T G SETX Missense_Mutation p.N2240H 0.17 deleterious(0.01) possibly_damaging(0.694) TCGA-YL-A8SK-01 X 48207020 48207020 A T SSX3 Missense_Mutation p.H162Q 0.35 deleterious(0.01) possibly_damaging(0.71) TCGA-YL-A8SL-01 10 94269859 94269859 T - IDE Frame_Shift_Del p.N282Mfs*23 0.18 TCGA-YL-A8SL-01 11 110479773 110479773 C T ARHGAP20 Missense_Mutation p.G237D 0.43 deleterious(0) probably_damaging(1) TCGA-YL-A8SL-01 14 20528658 20528658 G T OR4L1 Missense_Mutation p.G152V 0.57 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SL-01 15 64464144 64464144 G A CSNK1G1 Nonsense_Mutation p.Q419* 0.36 TCGA-YL-A8SL-01 16 11785821 11785821 G A TXNDC11 Missense_Mutation p.P409S 0.09 tolerated(0.34) benign(0.034) TCGA-YL-A8SL-01 16 53487463 53487463 A G RBL2 Missense_Mutation p.E289G 0.20 deleterious(0) probably_damaging(0.928) TCGA-YL-A8SL-01 16 58314536 58314536 G A PRSS54 Silent p.Y260Y 0.54 TCGA-YL-A8SL-01 17 10614356 10614356 C G ADPRM Silent p.A308A 0.53 TCGA-YL-A8SL-01 17 11998899 11998899 G A MAP2K4 Missense_Mutation p.R134Q 0.18 deleterious(0.01) benign(0.325) TCGA-YL-A8SL-01 17 38956166 38956166 C T KRT28 5'UTR 0.44 TCGA-YL-A8SL-01 17 5462409 5462409 C T NLRP1 Missense_Mutation p.R536Q 0.56 tolerated(1) benign(0.001) TCGA-YL-A8SL-01 17 66274395 66274395 A G SLC16A6 Missense_Mutation p.W23R 0.44 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SL-01 19 45490584 45490584 G A CLPTM1 Missense_Mutation p.R314H 0.20 deleterious(0) probably_damaging(0.993) TCGA-YL-A8SL-01 19 51274218 51274218 G T GPR32 Missense_Mutation p.V121L 0.58 tolerated(1) benign(0.004) TCGA-YL-A8SL-01 19 51671586 51671587 GT - CTD-3187F8.14 Intron 0.26 TCGA-YL-A8SL-01 19 55143638 55143638 C T LILRB1 Missense_Mutation p.S204F 0.18 tolerated(0.08) benign(0.014) TCGA-YL-A8SL-01 1 114524076 114524076 T G OLFML3 Missense_Mutation p.D302E 0.18 tolerated(0.08) possibly_damaging(0.773) TCGA-YL-A8SL-01 1 119428032 119428032 C G TBX15 Missense_Mutation p.A272P 0.15 tolerated(1) benign(0.002) TCGA-YL-A8SL-01 1 158614143 158614143 G A SPTA1 Missense_Mutation p.A1413V 0.07 tolerated(0.08) benign(0.05) TCGA-YL-A8SL-01 1 160001547 160001550 GCTG - PIGM 5'UTR 0.55 TCGA-YL-A8SL-01 1 167038355 167038355 C T GPA33 Silent p.P73P 0.42 TCGA-YL-A8SL-01 1 186925324 186925324 C G PLA2G4A Nonsense_Mutation p.S476* 0.42 TCGA-YL-A8SL-01 1 19166997 19166997 G A TAS1R2 Missense_Mutation p.P539L 0.57 deleterious(0.05) benign(0.382) TCGA-YL-A8SL-01 1 198713285 198713285 A C PTPRC Missense_Mutation p.K934Q 0.44 tolerated(0.2) benign(0.418) TCGA-YL-A8SL-01 1 212515567 212515567 C G PPP2R5A Missense_Mutation p.P173R 0.38 deleterious(0) possibly_damaging(0.604) TCGA-YL-A8SL-01 1 214491465 214491465 T C SMYD2 Missense_Mutation p.V131A 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-YL-A8SL-01 1 216251433 216251433 T G USH2A Missense_Mutation p.Q1857P 0.46 benign(0.022) TCGA-YL-A8SL-01 1 29481413 29481413 G A SRSF4 Missense_Mutation p.R125C 0.20 deleterious(0) probably_damaging(0.998) TCGA-YL-A8SL-01 1 36786088 36786088 G A SH3D21 Silent p.E608E 0.41 TCGA-YL-A8SL-01 1 45973941 45973941 C T MMACHC Missense_Mutation p.R112C 0.12 deleterious(0) probably_damaging(0.959) TCGA-YL-A8SL-01 1 46663480 46663480 T G POMGNT1 Missense_Mutation p.K5T 0.39 benign(0.01) TCGA-YL-A8SL-01 1 9804060 9804060 A T CLSTN1 Missense_Mutation p.M413K 0.42 tolerated(0.37) benign(0.213) TCGA-YL-A8SL-01 20 2384322 2384322 G A TGM6 Missense_Mutation p.A397T 0.58 deleterious(0) possibly_damaging(0.842) TCGA-YL-A8SL-01 21 16339649 16339649 T C NRIP1 Missense_Mutation p.N289D 0.36 tolerated(0.23) benign(0.342) TCGA-YL-A8SL-01 21 43230589 43230589 G A PRDM15 Missense_Mutation p.A1224V 0.12 deleterious(0.01) possibly_damaging(0.855) TCGA-YL-A8SL-01 22 21097023 21097023 G T PI4KA Silent p.T1162T 0.15 TCGA-YL-A8SL-01 3 122002787 122002792 CTCCAG - CASR In_Frame_Del p.S674_S675del 0.34 TCGA-YL-A8SL-01 3 122990559 122990559 A C SEC22A Missense_Mutation p.Y305S 0.41 tolerated(0.37) benign(0.217) TCGA-YL-A8SL-01 3 138417865 138417865 C T PIK3CB Missense_Mutation p.E552K 0.09 deleterious(0) possibly_damaging(0.897) TCGA-YL-A8SL-01 4 54966544 54966544 C A GSX2 Silent p.I11I 0.09 TCGA-YL-A8SL-01 6 109762786 109762786 G A SMPD2 Missense_Mutation p.R60K 0.46 tolerated(1) benign(0.004) TCGA-YL-A8SL-01 6 168440860 168440860 G A KIF25 Missense_Mutation p.V204M 0.34 deleterious(0.04) possibly_damaging(0.516) TCGA-YL-A8SL-01 6 46973590 46973590 C T GPR110 Silent p.K852K 0.41 TCGA-YL-A8SL-01 7 142028602 142028602 C G TRBV6-1 Missense_Mutation p.S112R 0.39 deleterious(0) possibly_damaging(0.579) TCGA-YL-A8SL-01 7 23313767 23313767 C T GPNMB Missense_Mutation p.A548V 0.44 tolerated(0.56) benign(0.013) TCGA-YL-A8SL-01 7 23571465 23571466 AC - TRA2A 5'UTR 0.27 TCGA-YL-A8SL-01 7 2472601 2472601 C T CHST12 Silent p.R109R 0.19 TCGA-YL-A8SL-01 7 2473422 2473422 A G CHST12 Missense_Mutation p.K383R 0.53 tolerated(0.49) benign(0.008) TCGA-YL-A8SL-01 7 94057038 94057038 C T COL1A2 Missense_Mutation p.R1123C 0.56 unknown(0) TCGA-YL-A8SL-01 9 21217216 21217216 T - IFNA16 Frame_Shift_Del p.H30Pfs*9 0.22 TCGA-YL-A8SL-01 X 41082490 41082490 C T USP9X Missense_Mutation p.L2196F 0.88 deleterious(0) probably_damaging(0.986) TCGA-YL-A8SO-01 11 118374348 118374348 A - KMT2A Frame_Shift_Del p.T2581Pfs*21 0.24 TCGA-YL-A8SO-01 11 61249346 61249346 C T PPP1R32 Missense_Mutation p.T22M 0.50 tolerated(0.09) benign(0.157) TCGA-YL-A8SO-01 12 7360651 7360652 - TA PEX5 Frame_Shift_Ins p.L402Yfs*2 0.10 TCGA-YL-A8SO-01 12 7882195 7882195 T C CLEC4C Missense_Mutation p.I213M 0.11 deleterious(0.01) possibly_damaging(0.573) TCGA-YL-A8SO-01 13 37014263 37014263 T C CCNA1 Silent p.F347F 0.23 TCGA-YL-A8SO-01 14 104000981 104000981 G A TRMT61A Silent p.L231L 0.58 TCGA-YL-A8SO-01 14 106110960 106110960 G A IGHG2 Silent p.V56V 0.19 TCGA-YL-A8SO-01 17 2995484 2995484 C A OR1D2 Missense_Mutation p.K269N 0.07 deleterious(0.02) possibly_damaging(0.809) TCGA-YL-A8SO-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-YL-A8SO-01 17 7680790 7680790 A C DNAH2 Missense_Mutation p.E1695D 0.05 benign(0.079) TCGA-YL-A8SO-01 17 79478956 79478956 G A ACTG1 Silent p.P112P 0.32 TCGA-YL-A8SO-01 19 38610375 38610375 G A SIPA1L3 Silent p.V907V 0.06 TCGA-YL-A8SO-01 19 52658800 52658800 A G ZNF836 Silent p.Y712Y 0.11 TCGA-YL-A8SO-01 19 55294987 55294987 C T KIR2DL1 Silent p.S289S 0.09 TCGA-YL-A8SO-01 19 5751816 5751816 C G CATSPERD Silent p.L382L 0.12 TCGA-YL-A8SO-01 19 9086501 9086501 C T MUC16 Missense_Mutation p.E1772K 0.28 unknown(0) TCGA-YL-A8SO-01 1 120056908 120056908 C A HSD3B1 Nonsense_Mutation p.Y254* 0.22 TCGA-YL-A8SO-01 1 150468986 150468986 G T TARS2 Missense_Mutation p.G268V 0.06 tolerated(0.09) possibly_damaging(0.493) TCGA-YL-A8SO-01 1 186326600 186326600 T C TPR Silent p.Q551Q 0.20 TCGA-YL-A8SO-01 1 78478968 78478968 G T DNAJB4 Missense_Mutation p.V149L 0.21 tolerated(0.86) benign(0.002) TCGA-YL-A8SO-01 20 9388600 9388600 G T PLCB4 Missense_Mutation p.A550S 0.20 tolerated(0.14) benign(0.131) TCGA-YL-A8SO-01 22 43460261 43460261 G A TTLL1 Silent p.G191G 0.06 TCGA-YL-A8SO-01 2 141115581 141115581 C T LRP1B Missense_Mutation p.G3788R 0.30 probably_damaging(0.989) TCGA-YL-A8SO-01 2 171902685 171902685 G C TLK1 Missense_Mutation p.L390V 0.05 tolerated(0.68) benign(0.01) TCGA-YL-A8SO-01 2 227924243 227924243 C T COL4A4 Missense_Mutation p.G754D 0.32 probably_damaging(0.959) TCGA-YL-A8SO-01 2 26689990 26689990 C T OTOF Missense_Mutation p.E1447K 0.21 tolerated(0.09) benign(0.437) TCGA-YL-A8SO-01 3 139236358 139236358 C G RBP1 3'UTR 0.26 TCGA-YL-A8SO-01 3 155205833 155205833 T C PLCH1 Missense_Mutation p.N856S 0.35 tolerated(0.19) possibly_damaging(0.69) TCGA-YL-A8SO-01 3 42916185 42916185 A T CYP8B1 Missense_Mutation p.L375Q 0.27 tolerated(0.61) benign(0.036) TCGA-YL-A8SO-01 4 76579226 76579226 G A G3BP2 Missense_Mutation p.P256S 0.19 deleterious(0.01) possibly_damaging(0.852) TCGA-YL-A8SO-01 4 88401672 88401672 C T SPARCL1 Missense_Mutation p.V557I 0.29 deleterious(0.01) possibly_damaging(0.805) TCGA-YL-A8SO-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.37 TCGA-YL-A8SO-01 5 14488270 14488270 G T TRIO Silent p.R2511R 0.38 TCGA-YL-A8SO-01 5 52781566 52781566 T - FST Intron 0.08 TCGA-YL-A8SO-01 5 79968166 79968166 C T MSH3 Missense_Mutation p.A299V 0.25 deleterious(0.03) possibly_damaging(0.857) TCGA-YL-A8SO-01 6 132939259 132939259 C T TAAR2 Missense_Mutation p.G29E 0.05 tolerated(0.33) probably_damaging(0.999) TCGA-YL-A8SO-01 6 145956563 145956563 T A EPM2A Missense_Mutation p.K179I 0.31 deleterious(0.03) possibly_damaging(0.882) TCGA-YL-A8SO-01 6 41900430 41900430 A T BYSL Missense_Mutation p.I434F 0.33 tolerated(0.25) benign(0.049) TCGA-YL-A8SO-01 6 42227383 42227383 G A TRERF1 Missense_Mutation p.R655W 0.08 deleterious(0) possibly_damaging(0.689) TCGA-YL-A8SO-01 7 63709526 63709526 C T ZNF679 Nonsense_Mutation p.R11* 0.16 TCGA-YL-A8SO-01 7 64525465 64525465 T G SNORA22 5'Flank 0.32 TCGA-YL-A8SO-01 8 117859877 117859877 T G RAD21 Silent p.R586R 0.11 TCGA-YL-A8SO-01 9 32427362 32427362 T C ACO1 Missense_Mutation p.L471P 0.21 deleterious(0) probably_damaging(1) TCGA-YL-A8SO-01 9 33468419 33468419 G A NOL6 Missense_Mutation p.P403L 0.24 deleterious(0) probably_damaging(0.998) TCGA-YL-A8SO-01 9 35548057 35548057 G A RUSC2 Silent p.S513S 0.20 TCGA-YL-A8SO-01 X 135426829 135426829 T A GPR112 Missense_Mutation p.S322T 0.48 tolerated(0.35) benign(0) TCGA-YL-A8SO-01 X 140994457 140994457 A C MAGEC1 Missense_Mutation p.I423L 0.57 tolerated_low_confidence(1) benign(0.031) TCGA-YL-A8SO-01 X 48053626 48053626 A G SSX5 Silent p.N114N 0.51 TCGA-YL-A8SP-01 10 108469017 108469017 G T SORCS1 Missense_Mutation p.D369E 0.37 deleterious(0.02) benign(0.356) TCGA-YL-A8SP-01 11 18955897 18955897 C G MRGPRX1 Silent p.L145L 0.52 TCGA-YL-A8SP-01 12 32832274 32832274 C G DNM1L 5'UTR 0.25 TCGA-YL-A8SP-01 12 55725832 55725832 C T OR6C3 Silent p.S116S 0.41 TCGA-YL-A8SP-01 13 31498491 31498491 A T MEDAG Silent p.S277S 0.37 TCGA-YL-A8SP-01 13 42267091 42267091 C A VWA8 Missense_Mutation p.L1194F 0.29 tolerated(0.16) possibly_damaging(0.726) TCGA-YL-A8SP-01 14 70826318 70826318 C T COX16 5'UTR 0.52 TCGA-YL-A8SP-01 17 73229024 73229024 G A NUP85 Missense_Mutation p.R492H 0.10 deleterious(0) probably_damaging(0.998) TCGA-YL-A8SP-01 19 22363305 22363305 G A ZNF676 Missense_Mutation p.S405F 0.41 tolerated(0.41) benign(0.002) TCGA-YL-A8SP-01 19 41838078 41838078 G A TGFB1 Silent p.L323L 0.11 TCGA-YL-A8SP-01 19 5039897 5039897 C T KDM4B Silent p.D64D 0.29 TCGA-YL-A8SP-01 1 145561191 145561191 G A ANKRD35 Silent p.P293P 0.45 TCGA-YL-A8SP-01 1 240656394 240656394 C T GREM2 Missense_Mutation p.V128I 0.51 tolerated(0.24) benign(0.025) TCGA-YL-A8SP-01 20 43142587 43142587 A C SERINC3 Missense_Mutation p.I45S 0.36 deleterious(0) probably_damaging(0.949) TCGA-YL-A8SP-01 20 9538335 9538335 C G PAK7 Missense_Mutation p.A555P 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-YL-A8SP-01 21 43706090 43706090 A G ABCG1 Missense_Mutation p.N320S 0.47 deleterious(0) possibly_damaging(0.505) TCGA-YL-A8SP-01 22 38121968 38121968 A G TRIOBP Silent p.L1135L 0.44 TCGA-YL-A8SP-01 2 130877697 130877697 G A POTEF Missense_Mutation p.P131L 0.38 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-YL-A8SP-01 3 46492135 46492135 G T LTF Missense_Mutation p.D244E 0.43 deleterious(0.04) benign(0.01) TCGA-YL-A8SP-01 4 140187731 140187731 T C MGARP 3'UTR 0.12 TCGA-YL-A8SP-01 4 155253687 155253687 G T DCHS2 Missense_Mutation p.Q726K 0.49 deleterious(0.02) possibly_damaging(0.589) TCGA-YL-A8SP-01 4 175897169 175897169 G A ADAM29 Missense_Mutation p.G165R 0.36 deleterious(0) possibly_damaging(0.531) TCGA-YL-A8SP-01 5 32069683 32069683 G T PDZD2 Missense_Mutation p.E820D 0.12 deleterious(0) probably_damaging(0.996) TCGA-YL-A8SP-01 6 56515973 56515973 G A DST Silent p.Y217Y 0.38 TCGA-YL-A8SP-01 6 89814872 89814872 C T SRSF12 Missense_Mutation p.G128R 0.24 deleterious(0.04) probably_damaging(0.979) TCGA-YL-A8SP-01 7 100701287 100701287 C T MUC17 Nonsense_Mutation p.R4482* 0.24 TCGA-YL-A8SP-01 7 55268923 55268923 T G EGFR Missense_Mutation p.F997V 0.34 deleterious(0) benign(0.408) TCGA-YL-A8SP-01 8 107782091 107782091 A G ABRA Missense_Mutation p.S110P 0.07 deleterious(0.03) benign(0.002) TCGA-YL-A8SP-01 9 84205796 84205796 C T TLE1 Missense_Mutation p.D585N 0.44 deleterious(0.01) probably_damaging(1) TCGA-YL-A8SP-01 X 3238698 3238698 C T MXRA5 Silent p.L1676L 0.09 TCGA-YL-A8SP-01 Y 21883102 21883102 C A KDM5D Silent p.V489V 0.81 TCGA-YL-A8SP-01 Y 4967195 4967195 G A PCDH11Y Missense_Mutation p.D526N 0.26 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SQ-01 10 69748522 69748522 T G HERC4 Silent p.V568V 0.03 TCGA-YL-A8SQ-01 11 129752042 129752042 G A NFRKB Missense_Mutation p.S402F 0.12 deleterious(0.03) unknown(0) TCGA-YL-A8SQ-01 11 61533649 61533649 C T MYRF Silent p.T118T 0.14 TCGA-YL-A8SQ-01 11 66625250 66625251 GT - LRFN4 Frame_Shift_Del p.S12Rfs*45 0.37 TCGA-YL-A8SQ-01 12 105151184 105151184 G A CHST11 Missense_Mutation p.R221Q 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-YL-A8SQ-01 12 49434497 49434497 T - KMT2D Frame_Shift_Del p.P2354Lfs*30 0.32 TCGA-YL-A8SQ-01 12 58020538 58020538 T C B4GALNT1 Missense_Mutation p.T531A 0.12 deleterious(0.01) benign(0.192) TCGA-YL-A8SQ-01 16 66944233 66944233 G A CDH16 Silent p.H699H 0.24 TCGA-YL-A8SQ-01 16 847879 847879 G A CHTF18 Missense_Mutation p.M944I 0.22 tolerated(0.65) benign(0.001) TCGA-YL-A8SQ-01 17 40280287 40280287 C G RAB5C Missense_Mutation p.E178Q 0.18 tolerated(0.16) benign(0.015) TCGA-YL-A8SQ-01 17 78854264 78854264 C T RPTOR Missense_Mutation p.S520L 0.33 deleterious(0) possibly_damaging(0.57) TCGA-YL-A8SQ-01 18 64235830 64235830 G A CDH19 Missense_Mutation p.L105F 0.05 deleterious(0) probably_damaging(1) TCGA-YL-A8SQ-01 18 67671306 67671312 ACAGCTG - RTTN 3'UTR 0.47 TCGA-YL-A8SQ-01 19 52619830 52619830 G A ZNF616 Missense_Mutation p.A196V 0.06 tolerated(0.61) benign(0) TCGA-YL-A8SQ-01 19 53854634 53854634 A T ZNF845 Missense_Mutation p.I236F 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-YL-A8SQ-01 1 152277018 152277018 G A FLG Silent p.S3448S 0.10 TCGA-YL-A8SQ-01 1 158299390 158299390 C T CD1B Missense_Mutation p.R219H 0.35 tolerated(0.42) benign(0.03) TCGA-YL-A8SQ-01 1 181546961 181546961 C A CACNA1E Missense_Mutation p.A191D 0.17 deleterious(0) possibly_damaging(0.887) TCGA-YL-A8SQ-01 1 248685230 248685230 G A OR2G6 Missense_Mutation p.G95S 0.25 tolerated(0.06) benign(0.016) TCGA-YL-A8SQ-01 1 9776098 9776098 C T PIK3CD Missense_Mutation p.R188W 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-YL-A8SQ-01 22 40417338 40417338 T C FAM83F Missense_Mutation p.L275P 0.08 deleterious(0) possibly_damaging(0.853) TCGA-YL-A8SQ-01 2 108487639 108487639 T G RGPD4 Missense_Mutation p.L1060R 0.17 deleterious(0) probably_damaging(0.985) TCGA-YL-A8SQ-01 2 111907651 111907651 T A BCL2L11 Missense_Mutation p.M142K 0.10 deleterious(0) benign(0.079) TCGA-YL-A8SQ-01 2 179425080 179425081 - T TTN Frame_Shift_Ins p.N28593Kfs*2 0.28 TCGA-YL-A8SQ-01 2 204073899 204073899 A G NBEAL1 Missense_Mutation p.I2518V 0.21 tolerated(0.51) benign(0.011) TCGA-YL-A8SQ-01 2 208632400 208632400 C A FZD5 Missense_Mutation p.G355V 0.14 deleterious(0.01) possibly_damaging(0.71) TCGA-YL-A8SQ-01 2 73836797 73836797 A G ALMS1 3'UTR 0.33 TCGA-YL-A8SQ-01 2 95542558 95542558 C T TEKT4 3'UTR 0.33 TCGA-YL-A8SQ-01 3 49845862 49845862 A C UBA7 Missense_Mutation p.V796G 0.24 tolerated(0.37) benign(0.002) TCGA-YL-A8SQ-01 4 104579429 104579429 A C TACR3 Missense_Mutation p.M227R 0.16 tolerated(0.25) benign(0.023) TCGA-YL-A8SQ-01 4 140375467 140375467 G C RAB33B Missense_Mutation p.G40R 0.42 deleterious(0) probably_damaging(1) TCGA-YL-A8SQ-01 4 187131663 187131663 G T CYP4V2 Silent p.S482S 0.19 TCGA-YL-A8SQ-01 4 265718 265718 C T ZNF732 Missense_Mutation p.E310K 0.17 tolerated(0.05) probably_damaging(0.966) TCGA-YL-A8SQ-01 4 71555199 71555210 TACAACCTCTAC - UTP3 In_Frame_Del p.Y269_Y272del 0.17 TCGA-YL-A8SQ-01 4 79340185 79340185 A G FRAS1 Missense_Mutation p.Y1503C 0.05 probably_damaging(0.986) TCGA-YL-A8SQ-01 5 13871697 13871697 C T DNAH5 Missense_Mutation p.V1192M 0.47 possibly_damaging(0.608) TCGA-YL-A8SQ-01 5 179740918 179740918 G A GFPT2 Silent p.R440R 0.46 TCGA-YL-A8SQ-01 6 160857879 160857879 G - SLC22A3 Frame_Shift_Del p.K349Nfs*27 0.14 TCGA-YL-A8SQ-01 6 30128486 30128486 G T TRIM10 Missense_Mutation p.D50E 0.20 tolerated(0.65) benign(0.003) TCGA-YL-A8SQ-01 6 43251409 43251409 G A TTBK1 Silent p.A977A 0.20 TCGA-YL-A8SQ-01 7 21920441 21920441 A G DNAH11 Missense_Mutation p.Y4113C 0.13 probably_damaging(1) TCGA-YL-A8SQ-01 8 143614792 143614792 G A BAI1 Missense_Mutation p.V1179I 0.21 tolerated(0.1) benign(0.312) TCGA-YL-A8SQ-01 8 22426717 22426717 G A SORBS3 Silent p.L454L 0.17 TCGA-YL-A8SQ-01 9 117552950 117552950 C T TNFSF15 Missense_Mutation p.V180I 0.18 tolerated(0.63) benign(0.022) TCGA-YL-A8SQ-01 9 134165483 134165483 G A PPAPDC3 Silent p.P33P 0.08 TCGA-YL-A8SQ-01 X 44945222 44945222 A G KDM6A Silent p.E1182E 0.20 TCGA-YL-A8SQ-01 X 47917813 47917813 C A ZNF630 3'UTR 0.16 TCGA-YL-A8SR-01 10 5781751 5781751 C G FAM208B Missense_Mutation p.L540V 0.28 deleterious(0) probably_damaging(1) TCGA-YL-A8SR-01 11 63137888 63137888 G T SLC22A9 Missense_Mutation p.W120C 0.20 deleterious(0) probably_damaging(1) TCGA-YL-A8SR-01 12 55361659 55361659 A T TESPA1 Missense_Mutation p.F75Y 0.27 tolerated(0.45) benign(0.293) TCGA-YL-A8SR-01 12 7169982 7169982 T C C1S Missense_Mutation p.V70A 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-YL-A8SR-01 12 80647288 80647288 G T OTOGL Missense_Mutation p.C434F 0.22 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SR-01 14 106725617 106725617 A G IGHV3-23 Missense_Mutation p.I13T 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.473) TCGA-YL-A8SR-01 14 64701762 64701762 G A ESR2 Silent p.S444S 0.08 TCGA-YL-A8SR-01 15 90349645 90349645 G A ANPEP Missense_Mutation p.T57I 0.05 deleterious(0.03) benign(0.031) TCGA-YL-A8SR-01 16 21658767 21658767 T C IGSF6 Silent p.L38L 0.21 TCGA-YL-A8SR-01 16 74526917 74526917 G A GLG1 Missense_Mutation p.P391L 0.05 deleterious(0.01) possibly_damaging(0.474) TCGA-YL-A8SR-01 17 41958703 41958703 T A MPP2 Missense_Mutation p.E276D 0.29 tolerated(0.23) probably_damaging(0.929) TCGA-YL-A8SR-01 18 48703521 48703521 G A MEX3C Missense_Mutation p.R394C 0.26 deleterious(0) probably_damaging(1) TCGA-YL-A8SR-01 19 1045143 1045143 C T ABCA7 Missense_Mutation p.P453L 0.25 tolerated(0.05) benign(0.021) TCGA-YL-A8SR-01 19 21934435 21934435 T C ZNF100 Intron 0.44 TCGA-YL-A8SR-01 1 12721809 12721809 C G AADACL4 Nonsense_Mutation p.Y131* 0.11 TCGA-YL-A8SR-01 1 231155679 231155679 C T FAM89A Missense_Mutation p.G162D 0.43 tolerated(0.32) possibly_damaging(0.662) TCGA-YL-A8SR-01 1 60520927 60520927 G C C1orf87 Missense_Mutation p.N97K 0.26 tolerated(0.21) benign(0.086) TCGA-YL-A8SR-01 1 6592683 6592683 T A NOL9 Nonsense_Mutation p.K459* 0.06 TCGA-YL-A8SR-01 20 36147327 36147327 C T BLCAP Missense_Mutation p.V84I 0.27 tolerated_low_confidence(1) benign(0) TCGA-YL-A8SR-01 2 191064955 191064955 T C C2orf88 3'UTR 0.28 TCGA-YL-A8SR-01 2 212530061 212530061 T C ERBB4 Missense_Mutation p.N620D 0.27 deleterious(0.02) benign(0.133) TCGA-YL-A8SR-01 2 86327179 86327179 G T POLR1A Missense_Mutation p.S65Y 0.07 deleterious(0) possibly_damaging(0.76) TCGA-YL-A8SR-01 3 193183888 193183888 T G ATP13A4 Silent p.R400R 0.20 TCGA-YL-A8SR-01 3 39225734 39225734 G T XIRP1 Missense_Mutation p.P1735T 0.06 tolerated(0.24) benign(0.193) TCGA-YL-A8SR-01 3 9911609 9911609 G A CIDEC Missense_Mutation p.L181F 0.06 deleterious(0.01) possibly_damaging(0.824) TCGA-YL-A8SR-01 4 128930134 128930134 T G C4orf29 Missense_Mutation p.L113R 0.30 deleterious(0) probably_damaging(0.999) TCGA-YL-A8SR-01 6 151773589 151773589 C T C6orf211 5'UTR 0.25 TCGA-YL-A8SR-01 6 160225011 160225011 C T PNLDC1 Missense_Mutation p.S77F 0.37 deleterious(0) probably_damaging(0.992) TCGA-YL-A8SR-01 7 151864240 151864249 CTGTTTCTGA - KMT2C Frame_Shift_Del p.Q3245* 0.09 TCGA-YL-A8SR-01 8 146068408 146068409 - T ZNF7 Frame_Shift_Ins p.E640* 0.08 TCGA-YL-A8SR-01 8 51617164 51617164 G A SNTG1 Missense_Mutation p.S348N 0.06 tolerated(0.31) benign(0.002) TCGA-YL-A9WH-01 10 102005616 102005616 G A CWF19L1 Missense_Mutation p.R302C 0.53 deleterious(0) probably_damaging(0.999) TCGA-YL-A9WH-01 10 112039789 112039789 C T MXI1 Nonsense_Mutation p.R224* 0.34 TCGA-YL-A9WH-01 10 50532018 50532018 C T C10orf71 Silent p.N476N 0.10 TCGA-YL-A9WH-01 10 70196776 70196776 T C DNA2 Silent p.L632L 0.43 TCGA-YL-A9WH-01 10 96540343 96540343 A C CYP2C19 Missense_Mutation p.K190T 0.53 tolerated(0.32) benign(0.012) TCGA-YL-A9WH-01 11 122930210 122930210 T C HSPA8 Missense_Mutation p.N364S 0.09 deleterious_low_confidence(0) benign(0.149) TCGA-YL-A9WH-01 11 16117662 16117662 C T SOX6 Silent p.K327K 0.38 TCGA-YL-A9WH-01 11 20178066 20178066 G A DBX1 Silent p.R281R 0.28 TCGA-YL-A9WH-01 11 92592421 92592421 G A FAT3 Missense_Mutation p.R3864H 0.50 probably_damaging(0.999) TCGA-YL-A9WH-01 12 32481322 32481322 C A BICD1 Silent p.R645R 0.44 TCGA-YL-A9WH-01 12 49225958 49225958 A G DDX23 Missense_Mutation p.L656P 0.32 deleterious(0.04) possibly_damaging(0.781) TCGA-YL-A9WH-01 13 101944628 101944628 G A NALCN Missense_Mutation p.R297C 0.21 deleterious(0.03) probably_damaging(0.978) TCGA-YL-A9WH-01 15 24924310 24924310 G T NPAP1 Missense_Mutation p.C1099F 0.40 tolerated_low_confidence(0.08) benign(0.012) TCGA-YL-A9WH-01 15 45898734 45898734 C G BLOC1S6 3'UTR 0.38 TCGA-YL-A9WH-01 15 76632802 76632802 C A ISL2 Silent p.R233R 0.29 TCGA-YL-A9WH-01 16 10031896 10031896 C G GRIN2A Missense_Mutation p.K309N 0.15 deleterious(0.02) benign(0.213) TCGA-YL-A9WH-01 16 20043950 20043950 T C GPR139 Missense_Mutation p.R57G 0.38 deleterious(0) probably_damaging(0.994) TCGA-YL-A9WH-01 16 72828630 72828630 C A ZFHX3 Nonsense_Mutation p.E2651* 0.03 TCGA-YL-A9WH-01 16 90028534 90028534 G A DEF8 Splice_Site p.X368_splice 0.14 TCGA-YL-A9WH-01 17 3195619 3195619 A G OR3A1 Silent p.S86S 0.65 TCGA-YL-A9WH-01 17 34854317 34854317 C T MYO19 Silent p.S850S 0.51 TCGA-YL-A9WH-01 17 4457112 4457112 A T MYBBP1A Missense_Mutation p.L185H 0.76 deleterious(0) probably_damaging(0.985) TCGA-YL-A9WH-01 17 59760933 59760933 C A BRIP1 Missense_Mutation p.L1158F 0.25 tolerated_low_confidence(0.54) benign(0.014) TCGA-YL-A9WH-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.73 deleterious(0) probably_damaging(0.997) TCGA-YL-A9WH-01 19 17950368 17950368 G T JAK3 Silent p.L453L 0.38 TCGA-YL-A9WH-01 19 17950369 17950369 A T JAK3 Missense_Mutation p.L453H 0.38 deleterious(0) probably_damaging(0.982) TCGA-YL-A9WH-01 19 36029228 36029228 C T GAPDHS Silent p.L89L 0.24 TCGA-YL-A9WH-01 19 53573131 53573131 G A ZNF160 Missense_Mutation p.P219L 0.17 tolerated(0.07) benign(0.005) TCGA-YL-A9WH-01 19 8808029 8808029 G A ACTL9 Silent p.C341C 0.21 TCGA-YL-A9WH-01 1 114968071 114968071 C T TRIM33 Silent p.Q565Q 0.32 TCGA-YL-A9WH-01 1 152284791 152284791 G A FLG Silent p.H857H 0.42 TCGA-YL-A9WH-01 1 153409549 153409549 G A S100A7L2 Silent p.S108S 0.31 TCGA-YL-A9WH-01 1 154459160 154459160 C G SHE Splice_Site p.X342_splice 0.52 TCGA-YL-A9WH-01 1 157804238 157804238 T G CD5L Missense_Mutation p.N226T 0.53 deleterious(0.03) possibly_damaging(0.486) TCGA-YL-A9WH-01 1 20141158 20141158 C T RNF186 Missense_Mutation p.S146N 0.05 tolerated(0.14) benign(0.054) TCGA-YL-A9WH-01 1 209974625 209974625 C T IRF6 Missense_Mutation p.R45Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-YL-A9WH-01 1 3328822 3328822 C T PRDM16 Silent p.G687G 0.27 TCGA-YL-A9WH-01 20 24565546 24565546 C T SYNDIG1 Missense_Mutation p.R179W 0.10 deleterious(0) probably_damaging(1) TCGA-YL-A9WH-01 20 31022345 31022345 C T ASXL1 Silent p.G610G 0.46 TCGA-YL-A9WH-01 20 62250769 62250769 G A GMEB2 5'UTR 0.29 TCGA-YL-A9WH-01 22 29438481 29438481 A G ZNRF3 Splice_Site p.X143_splice 0.55 TCGA-YL-A9WH-01 2 100900874 100900874 G A LONRF2 Silent p.L717L 0.47 TCGA-YL-A9WH-01 2 125521584 125521584 C - CNTNAP5 Frame_Shift_Del p.T797Kfs*33 0.36 TCGA-YL-A9WH-01 2 20824556 20824556 C T HS1BP3 Silent p.G240G 0.08 TCGA-YL-A9WH-01 2 210559664 210559664 A G MAP2 Missense_Mutation p.R924G 0.16 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-YL-A9WH-01 2 234237211 234237211 C G SAG Missense_Mutation p.F200L 0.24 deleterious(0) probably_damaging(0.972) TCGA-YL-A9WH-01 2 55825874 55825874 C G SMEK2 Missense_Mutation p.G200A 0.29 deleterious(0) possibly_damaging(0.733) TCGA-YL-A9WH-01 2 68882361 68882361 C T PROKR1 Missense_Mutation p.R279C 0.55 deleterious(0) probably_damaging(1) TCGA-YL-A9WH-01 3 186917361 186917361 C T RTP1 Missense_Mutation p.H99Y 0.36 deleterious(0) possibly_damaging(0.812) TCGA-YL-A9WH-01 4 155507284 155507284 G T FGA Missense_Mutation p.L433M 0.34 deleterious(0.03) probably_damaging(0.949) TCGA-YL-A9WH-01 4 186241903 186241903 A G SNX25 Missense_Mutation p.D290G 0.35 tolerated(0.06) benign(0.263) TCGA-YL-A9WH-01 4 3029648 3029648 G A GRK4 Missense_Mutation p.R327Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-YL-A9WH-01 5 157181082 157181082 T G LSM11 Missense_Mutation p.L220R 0.58 deleterious(0) possibly_damaging(0.833) TCGA-YL-A9WH-01 6 35259145 35259145 C T ZNF76 Missense_Mutation p.S239L 0.65 deleterious(0) probably_damaging(0.957) TCGA-YL-A9WH-01 7 113558913 113558913 C G PPP1R3A Missense_Mutation p.D47H 0.11 tolerated(0.06) possibly_damaging(0.764) TCGA-YL-A9WH-01 7 122111518 122111518 C G CADPS2 Silent p.L699L 0.41 TCGA-YL-A9WH-01 7 128694737 128694737 C A TNPO3 Missense_Mutation p.A30S 0.57 deleterious(0.01) probably_damaging(0.984) TCGA-YL-A9WH-01 7 134849221 134849221 G A TMEM140 Missense_Mutation p.D10N 0.25 tolerated(0.63) benign(0.002) TCGA-YL-A9WH-01 7 135106950 135106950 G T CNOT4 Missense_Mutation p.N109K 0.43 deleterious(0) probably_damaging(0.999) TCGA-YL-A9WH-01 7 151845693 151845693 T C KMT2C Missense_Mutation p.Y4440C 0.40 probably_damaging(1) TCGA-YL-A9WH-01 7 47920335 47920335 C A PKD1L1 Missense_Mutation p.V1171L 0.18 deleterious(0) benign(0.03) TCGA-YL-A9WH-01 7 48280530 48280530 G T ABCA13 Nonsense_Mutation p.E377* 0.39 TCGA-YL-A9WH-01 7 720338 720338 C T PRKAR1B Missense_Mutation p.R68Q 0.05 tolerated(0.68) benign(0) TCGA-YL-A9WH-01 8 67974277 67974277 C A COPS5 5'UTR 0.07 TCGA-YL-A9WH-01 8 74529544 74529544 G A STAU2 Missense_Mutation p.P185S 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-YL-A9WH-01 8 86573795 86573795 G A REXO1L1P Silent p.S644S 0.10 TCGA-YL-A9WH-01 9 123215894 123215894 G A CDK5RAP2 Missense_Mutation p.T878M 0.54 tolerated(0.56) benign(0.002) TCGA-YL-A9WH-01 X 112022741 112022741 T C AMOT Missense_Mutation p.I881V 0.78 unknown(0) TCGA-YL-A9WH-01 X 1484095 1484095 G A IL3RA Missense_Mutation p.R275Q 0.23 tolerated(0.78) benign(0.009) TCGA-YL-A9WH-01 X 3227766 3227766 G C MXRA5 Missense_Mutation p.H2826Q 0.89 tolerated(0.06) possibly_damaging(0.84) TCGA-YL-A9WH-01 X 48458010 48458010 A T WDR13 Missense_Mutation p.E143V 0.73 deleterious(0.03) benign(0.052) TCGA-YL-A9WH-01 Y 4925224 4925224 C T PCDH11Y Silent p.G120G 0.57 TCGA-YL-A9WI-01 11 107578510 107578510 G A SLN 3'UTR 0.08 TCGA-YL-A9WI-01 11 1955174 1955174 C A TNNT3 Missense_Mutation p.A101E 0.60 tolerated(0.08) probably_damaging(0.915) TCGA-YL-A9WI-01 11 9990086 9990086 G T SBF2 Missense_Mutation p.P468T 0.36 deleterious(0.04) probably_damaging(0.927) TCGA-YL-A9WI-01 12 108939019 108939019 C T SART3 Missense_Mutation p.V209M 0.46 deleterious(0) possibly_damaging(0.797) TCGA-YL-A9WI-01 12 122669143 122669143 C T LRRC43 Silent p.P76P 0.26 TCGA-YL-A9WI-01 12 5020567 5020567 A T KCNA1 Missense_Mutation p.N8I 0.32 tolerated_low_confidence(0.1) benign(0.042) TCGA-YL-A9WI-01 12 57346016 57346016 C A RDH16 Nonsense_Mutation p.E251* 0.47 TCGA-YL-A9WI-01 12 57994722 57994722 C T PIP4K2C Silent p.S314S 0.35 TCGA-YL-A9WI-01 12 63544329 63544329 G T AVPR1A Silent p.A96A 0.25 TCGA-YL-A9WI-01 12 8388294 8388294 C T RP11-266K4.9 RNA 0.25 TCGA-YL-A9WI-01 12 95868032 95868032 G A METAP2 Missense_Mutation p.G26E 0.37 tolerated_low_confidence(0.63) benign(0.002) TCGA-YL-A9WI-01 13 29608202 29608202 G A MTUS2 Missense_Mutation p.A806T 0.37 tolerated(0.06) benign(0.155) TCGA-YL-A9WI-01 14 37736347 37736347 C G MIPOL1 Missense_Mutation p.S75C 0.47 deleterious(0.01) possibly_damaging(0.537) TCGA-YL-A9WI-01 14 38061313 38061313 C T FOXA1 Missense_Mutation p.D226N 0.47 deleterious(0) probably_damaging(0.999) TCGA-YL-A9WI-01 16 2136230 2136230 G C TSC2 Missense_Mutation p.G1567R 0.50 deleterious(0) probably_damaging(1) TCGA-YL-A9WI-01 16 57003576 57003576 A T CETP Missense_Mutation p.Q141L 0.28 tolerated(0.33) benign(0.178) TCGA-YL-A9WI-01 17 18181563 18181563 T A TOP3A Missense_Mutation p.R751S 0.40 deleterious(0.01) benign(0.025) TCGA-YL-A9WI-01 17 25749151 25749151 C T TBC1D3P5 RNA 0.38 TCGA-YL-A9WI-01 19 1050920 1050920 G C ABCA7 Silent p.L851L 0.11 TCGA-YL-A9WI-01 19 19335210 19335210 A G NCAN Missense_Mutation p.Y249C 0.47 deleterious(0) probably_damaging(0.999) TCGA-YL-A9WI-01 19 36727583 36727583 T C ZNF146 Missense_Mutation p.F81L 0.09 deleterious(0) probably_damaging(0.975) TCGA-YL-A9WI-01 19 50156102 50156102 C T SCAF1 Missense_Mutation p.S819F 0.50 unknown(0) TCGA-YL-A9WI-01 19 51412612 51412612 G C KLK4 Missense_Mutation p.H40Q 0.10 deleterious(0.04) benign(0.386) TCGA-YL-A9WI-01 1 150445317 150445317 C G RPRD2 Missense_Mutation p.P1298R 0.40 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-YL-A9WI-01 1 150445318 150445318 T A RPRD2 Silent p.P1298P 0.33 TCGA-YL-A9WI-01 1 150445319 150445319 G C RPRD2 Missense_Mutation p.V1299L 0.42 tolerated_low_confidence(0.09) benign(0.068) TCGA-YL-A9WI-01 1 158646058 158646058 T C SPTA1 Missense_Mutation p.K329E 0.42 tolerated(0.12) possibly_damaging(0.734) TCGA-YL-A9WI-01 1 158687669 158687669 G A OR6K3 Silent p.P79P 0.34 TCGA-YL-A9WI-01 1 158687670 158687670 G T OR6K3 Missense_Mutation p.P79H 0.34 deleterious(0) probably_damaging(1) TCGA-YL-A9WI-01 20 49574993 49574993 C A DPM1 Missense_Mutation p.R23L 0.68 tolerated(0.33) unknown(0) TCGA-YL-A9WI-01 22 38692756 38692756 G C CSNK1E Intron 0.64 TCGA-YL-A9WI-01 2 103063627 103063627 G A IL18RAP Silent p.L390L 0.46 TCGA-YL-A9WI-01 2 168107563 168107563 C G XIRP2 Missense_Mutation p.L3221V 0.46 probably_damaging(0.999) TCGA-YL-A9WI-01 2 178482390 178482390 G A TTC30A Missense_Mutation p.A347V 0.41 tolerated(0.05) benign(0.033) TCGA-YL-A9WI-01 2 190315668 190315668 G T WDR75 Missense_Mutation p.D86Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-YL-A9WI-01 2 21233084 21233084 C T APOB Missense_Mutation p.R2219H 0.28 benign(0.007) TCGA-YL-A9WI-01 2 24929887 24929887 C G NCOA1 Missense_Mutation p.S516R 0.36 deleterious(0) benign(0.031) TCGA-YL-A9WI-01 2 47378575 47378575 T G C2orf61 Missense_Mutation p.N74T 0.43 deleterious(0.02) possibly_damaging(0.736) TCGA-YL-A9WI-01 3 36779816 36779816 G A DCLK3 Missense_Mutation p.A112V 0.15 deleterious(0.04) benign(0.105) TCGA-YL-A9WI-01 3 47437635 47437635 T C PTPN23 Silent p.F29F 0.10 TCGA-YL-A9WI-01 4 146700587 146700587 G A ZNF827 Silent p.D820D 0.46 TCGA-YL-A9WI-01 4 76452441 76452441 G A THAP6 3'UTR 0.05 TCGA-YL-A9WI-01 5 112175225 112175231 GGAACTA - APC Frame_Shift_Del p.T1313Qfs*6 0.57 TCGA-YL-A9WI-01 6 39046951 39046951 A C GLP1R Missense_Mutation p.M340L 0.68 deleterious(0.02) benign(0.01) TCGA-YL-A9WI-01 6 43325471 43325471 C T ZNF318 Missense_Mutation p.R194Q 0.28 probably_damaging(0.939) TCGA-YL-A9WI-01 7 42018254 42018254 A G GLI3 Missense_Mutation p.Y531H 0.08 deleterious(0) probably_damaging(0.943) TCGA-YL-A9WI-01 8 30699598 30699598 T C TEX15 Silent p.R2312R 0.20 TCGA-YL-A9WI-01 9 107564358 107564358 T C ABCA1 Missense_Mutation p.K1559E 0.07 tolerated(0.15) benign(0.216) TCGA-YL-A9WI-01 9 26923257 26923257 C A PLAA Missense_Mutation p.A320S 0.17 tolerated(0.77) benign(0.013) TCGA-YL-A9WI-01 9 6015581 6015581 C A RANBP6 Silent p.V9V 0.36 TCGA-YL-A9WI-01 9 72933829 72933830 AA - SMC5 Frame_Shift_Del p.K701Nfs*28 0.32 TCGA-YL-A9WI-01 X 140996226 140996226 C A MAGEC1 Silent p.T1012T 0.88 TCGA-YL-A9WJ-01 10 69881645 69881645 T C MYPN Silent p.F150F 0.15 TCGA-YL-A9WJ-01 11 123901102 123901102 A G OR10G8 Missense_Mutation p.Y258C 0.17 deleterious(0) probably_damaging(1) TCGA-YL-A9WJ-01 11 60183438 60183438 C A MS4A14 Missense_Mutation p.Q366K 0.17 tolerated(0.12) benign(0.194) TCGA-YL-A9WJ-01 13 25283890 25283890 G A ATP12A Missense_Mutation p.R902H 0.12 tolerated(0.56) benign(0.001) TCGA-YL-A9WJ-01 13 39263438 39263438 C T FREM2 Silent p.L653L 0.23 TCGA-YL-A9WJ-01 13 58299274 58299274 G A PCDH17 Missense_Mutation p.R1109Q 0.21 tolerated_low_confidence(0.27) benign(0.001) TCGA-YL-A9WJ-01 13 78167665 78167665 A G SCEL Missense_Mutation p.N237D 0.14 tolerated(0.4) benign(0.016) TCGA-YL-A9WJ-01 15 92459355 92459355 C T SLCO3A1 Missense_Mutation p.R105W 0.24 deleterious(0.01) probably_damaging(1) TCGA-YL-A9WJ-01 16 15814136 15814136 G A MYH11 Nonsense_Mutation p.R1616* 0.15 TCGA-YL-A9WJ-01 17 81042876 81042876 G T METRNL Missense_Mutation p.G78V 0.21 deleterious(0) probably_damaging(1) TCGA-YL-A9WJ-01 18 73000203 73000203 G A TSHZ1 Silent p.V902V 0.18 TCGA-YL-A9WJ-01 19 41096646 41096646 G T SHKBP1 Silent p.L593L 0.09 TCGA-YL-A9WJ-01 19 48220230 48220235 CCCTTC - EHD2 In_Frame_Del p.P121_F122del 0.15 TCGA-YL-A9WJ-01 1 21924940 21924940 G A RAP1GAP Missense_Mutation p.T675M 0.29 tolerated(0.18) possibly_damaging(0.857) TCGA-YL-A9WJ-01 1 28800433 28800433 G C PHACTR4 Missense_Mutation p.R407S 0.14 deleterious(0.02) possibly_damaging(0.543) TCGA-YL-A9WJ-01 1 91846485 91846485 G A HFM1 Missense_Mutation p.S286F 0.16 deleterious(0) probably_damaging(0.982) TCGA-YL-A9WJ-01 1 91846486 91846486 A C HFM1 Missense_Mutation p.S286A 0.16 deleterious(0) possibly_damaging(0.745) TCGA-YL-A9WJ-01 2 110922636 110922636 T A NPHP1 Nonsense_Mutation p.K241* 0.21 TCGA-YL-A9WJ-01 2 141108382 141108382 G T LRP1B Missense_Mutation p.A3959E 0.15 possibly_damaging(0.587) TCGA-YL-A9WJ-01 2 219508714 219508714 G C ZNF142 Missense_Mutation p.P842R 0.24 deleterious(0.04) probably_damaging(0.942) TCGA-YL-A9WJ-01 2 70906069 70906069 G C ADD2 Missense_Mutation p.R384G 0.17 deleterious(0) probably_damaging(0.998) TCGA-YL-A9WJ-01 4 134073272 134073272 G C PCDH10 Missense_Mutation p.E659D 0.21 tolerated(0.57) probably_damaging(0.996) TCGA-YL-A9WJ-01 4 155507041 155507041 G T FGA Missense_Mutation p.P514T 0.23 tolerated(0.09) benign(0.135) TCGA-YL-A9WJ-01 4 162307016 162307016 G T FSTL5 Nonsense_Mutation p.Y809* 0.23 TCGA-YL-A9WJ-01 7 7514264 7514264 C T COL28A1 Missense_Mutation p.G424R 0.09 deleterious(0) probably_damaging(0.999) TCGA-YL-A9WJ-01 X 123514728 123514728 C T TENM1 Silent p.L2619L 0.43 TCGA-YL-A9WJ-01 X 2990116 2990116 C A ARSF Missense_Mutation p.Q21K 0.43 tolerated(0.66) benign(0.005) TCGA-YL-A9WK-01 11 1081442 1081442 C T MUC2 Missense_Mutation p.P487L 0.07 probably_damaging(1) TCGA-YL-A9WK-01 11 55032718 55032718 G T TRIM48 Missense_Mutation p.L129F 0.06 tolerated(0.47) benign(0.087) TCGA-YL-A9WK-01 11 58893249 58893249 G C FAM111B Missense_Mutation p.G560A 0.09 tolerated(0.07) probably_damaging(0.995) TCGA-YL-A9WK-01 12 133304674 133304674 C A ANKLE2 Silent p.P853P 0.06 TCGA-YL-A9WK-01 12 45816826 45816826 C T ANO6 Missense_Mutation p.A857V 0.05 deleterious(0) probably_damaging(0.976) TCGA-YL-A9WK-01 13 73337651 73337651 G C DIS3 Missense_Mutation p.R689G 0.26 deleterious(0) probably_damaging(1) TCGA-YL-A9WK-01 16 15841786 15841786 G A MYH11 Missense_Mutation p.A739V 0.11 possibly_damaging(0.684) TCGA-YL-A9WK-01 16 1774642 1774642 C T MAPK8IP3 Nonsense_Mutation p.Q135* 0.37 TCGA-YL-A9WK-01 17 44117077 44117077 T C KANSL1 Missense_Mutation p.T732A 0.30 tolerated(1) benign(0.002) TCGA-YL-A9WK-01 17 44117079 44117079 A G KANSL1 Missense_Mutation p.L731P 0.30 tolerated(0.09) probably_damaging(0.926) TCGA-YL-A9WK-01 17 7126073 7126073 G A ACADVL Silent p.V345V 0.35 TCGA-YL-A9WK-01 17 7339883 7339883 C A TMEM102 Missense_Mutation p.S195R 0.10 deleterious_low_confidence(0.02) benign(0.003) TCGA-YL-A9WK-01 17 7578272 7578272 G T TP53 Missense_Mutation p.H193N 0.70 deleterious(0) probably_damaging(1) TCGA-YL-A9WK-01 18 21513897 21513897 C T LAMA3 Nonsense_Mutation p.Q2954* 0.14 TCGA-YL-A9WK-01 18 28923598 28923598 T C DSG1 Intron 0.50 TCGA-YL-A9WK-01 19 36269483 36269483 G A ARHGAP33 Missense_Mutation p.E130K 0.23 tolerated_low_confidence(0.13) possibly_damaging(0.502) TCGA-YL-A9WK-01 19 54804140 54804140 C T LILRA3 Missense_Mutation p.G12R 0.09 deleterious(0.04) benign(0.181) TCGA-YL-A9WK-01 19 58288003 58288003 G A ZNF586 Silent p.V43V 0.28 TCGA-YL-A9WK-01 19 7697378 7697382 GTCCA - PCP2 Frame_Shift_Del p.M63Kfs*16 0.39 TCGA-YL-A9WK-01 1 171086373 171086373 G C FMO3 Missense_Mutation p.G464R 0.11 deleterious(0) probably_damaging(0.979) TCGA-YL-A9WK-01 21 47773070 47773070 G A PCNT Silent p.Q503Q 0.28 TCGA-YL-A9WK-01 2 27799480 27799480 A T C2orf16 Missense_Mutation p.Y14F 0.08 tolerated(0.59) benign(0.007) TCGA-YL-A9WK-01 3 64666958 64666958 G C ADAMTS9 Missense_Mutation p.Q200E 0.33 tolerated(0.06) benign(0.001) TCGA-YL-A9WK-01 4 120192824 120192824 A T USP53 Missense_Mutation p.R603S 0.31 deleterious(0.02) benign(0.081) TCGA-YL-A9WK-01 5 118865641 118865641 C T HSD17B4 Missense_Mutation p.P632L 0.08 deleterious(0.04) possibly_damaging(0.454) TCGA-YL-A9WK-01 5 140203514 140203514 C T PCDHA5 Silent p.T718T 0.12 TCGA-YL-A9WK-01 5 140530650 140530650 G C PCDHB6 Missense_Mutation p.G271A 0.07 deleterious(0) probably_damaging(0.966) TCGA-YL-A9WK-01 5 157078493 157078493 G A SOX30 Silent p.G198G 0.12 TCGA-YL-A9WK-01 6 142691610 142691610 T G GPR126 Missense_Mutation p.F250C 0.17 deleterious(0) probably_damaging(0.952) TCGA-YL-A9WK-01 6 73787590 73787590 G A KCNQ5 Missense_Mutation p.D300N 0.32 deleterious(0) probably_damaging(0.997) TCGA-YL-A9WK-01 6 7601689 7601689 G T SNRNP48 Missense_Mutation p.R176L 0.05 deleterious(0.01) benign(0.061) TCGA-YL-A9WK-01 7 149152891 149152891 G A ZNF777 Missense_Mutation p.L75F 0.29 tolerated_low_confidence(0.22) benign(0.002) TCGA-YL-A9WK-01 7 33134756 33134756 C T RP9 3'UTR 0.06 TCGA-YL-A9WK-01 8 144672319 144672319 G A EEF1D Intron 0.14 TCGA-YL-A9WK-01 9 125288736 125288736 C A OR1N1 Silent p.V279V 0.33 TCGA-YL-A9WK-01 9 39178168 39178168 A G CNTNAP3 Missense_Mutation p.F243S 0.18 deleterious(0) possibly_damaging(0.568) TCGA-YL-A9WL-01 11 104034551 104034551 G A PDGFD Silent p.N35N 0.28 TCGA-YL-A9WL-01 11 55579447 55579447 T C OR5L1 Missense_Mutation p.Y169H 0.48 tolerated(0.37) probably_damaging(0.988) TCGA-YL-A9WL-01 11 59942906 59942906 G A MS4A6A Missense_Mutation p.T201M 0.54 tolerated(0.21) benign(0.012) TCGA-YL-A9WL-01 12 116446367 116446367 T C MED13L Silent p.L617L 0.58 TCGA-YL-A9WL-01 12 57109973 57109973 C T NACA Missense_Mutation p.V628I 0.46 tolerated_low_confidence(0.16) benign(0.198) TCGA-YL-A9WL-01 14 76147908 76147908 A G TTLL5 Missense_Mutation p.K68E 0.05 deleterious(0) possibly_damaging(0.63) TCGA-YL-A9WL-01 16 28847368 28847368 G A ATXN2L Missense_Mutation p.A1004T 0.50 deleterious(0.02) benign(0.217) TCGA-YL-A9WL-01 17 1577185 1577216 ACCTACACCAGACCAGGTACACTGCTGAGGCC - PRPF8 Splice_Site p.X1100_splice 0.27 TCGA-YL-A9WL-01 17 39521167 39521167 C T KRT33B Missense_Mutation p.V321M 0.09 deleterious(0.01) possibly_damaging(0.527) TCGA-YL-A9WL-01 17 73953635 73953635 C T ACOX1 Missense_Mutation p.R148Q 0.48 deleterious(0.03) possibly_damaging(0.873) TCGA-YL-A9WL-01 18 14850219 14850219 T A ANKRD30B Silent p.T1015T 0.63 TCGA-YL-A9WL-01 18 31538200 31538201 - A NOL4 Intron 0.35 TCGA-YL-A9WL-01 18 5891854 5891854 G A TMEM200C Missense_Mutation p.A70V 0.43 deleterious(0) probably_damaging(0.984) TCGA-YL-A9WL-01 19 34263027 34263027 C T CHST8 Missense_Mutation p.R112C 0.20 deleterious(0.01) possibly_damaging(0.891) TCGA-YL-A9WL-01 19 34935916 34935916 G A UBA2 Missense_Mutation p.E221K 0.19 tolerated(0.18) benign(0.006) TCGA-YL-A9WL-01 19 35616090 35616090 G A LGI4 3'UTR 0.12 TCGA-YL-A9WL-01 19 35616120 35616120 G C LGI4 Missense_Mutation p.H531D 0.10 tolerated(0.07) benign(0.028) TCGA-YL-A9WL-01 1 111146236 111146236 A G KCNA2 Missense_Mutation p.V390A 0.07 deleterious(0) probably_damaging(0.996) TCGA-YL-A9WL-01 1 228210491 228210491 C A WNT3A Missense_Mutation p.S65R 0.09 deleterious(0.05) probably_damaging(0.92) TCGA-YL-A9WL-01 1 236882229 236882229 C T ACTN2 Missense_Mutation p.R93W 0.06 deleterious(0) probably_damaging(1) TCGA-YL-A9WL-01 1 40149730 40149730 A T HPCAL4 Missense_Mutation p.I86N 0.31 deleterious(0) possibly_damaging(0.897) TCGA-YL-A9WL-01 1 76333274 76333274 G T MSH4 Splice_Site p.X435_splice 0.28 TCGA-YL-A9WL-01 20 24930021 24930021 G A CST7 5'UTR 0.08 TCGA-YL-A9WL-01 20 49626686 49626686 G A KCNG1 Missense_Mutation p.R64W 0.27 deleterious(0.02) benign(0.208) TCGA-YL-A9WL-01 2 191937909 191937909 A G STAT4 Missense_Mutation p.L127P 0.44 tolerated(0.11) benign(0.003) TCGA-YL-A9WL-01 2 99410900 99410900 T C KIAA1211L 3'UTR 0.27 TCGA-YL-A9WL-01 3 105086325 105086325 G C ALCAM Missense_Mutation p.G25R 0.29 tolerated(0.08) possibly_damaging(0.878) TCGA-YL-A9WL-01 3 183894765 183894765 G T AP2M1 5'UTR 0.35 TCGA-YL-A9WL-01 5 140250402 140250402 G A PCDHA11 Missense_Mutation p.A572T 0.08 tolerated_low_confidence(0.28) benign(0.009) TCGA-YL-A9WL-01 6 111888850 111888850 A T TRAF3IP2 Missense_Mutation p.W446R 0.40 deleterious(0) probably_damaging(0.982) TCGA-YL-A9WL-01 7 116140406 116140406 A G CAV2 Silent p.K81K 0.09 TCGA-YL-A9WL-01 7 12692456 12692457 - A SCIN 3'UTR 0.50 TCGA-YL-A9WL-01 8 113331065 113331065 C A CSMD3 Splice_Site p.X2454_splice 0.69 TCGA-YL-A9WL-01 9 6554737 6554737 G A GLDC Silent p.H749H 0.40 TCGA-YL-A9WL-01 X 151131069 151131069 C T GABRE Missense_Mutation p.R130H 0.84 deleterious(0.04) probably_damaging(0.995) TCGA-YL-A9WX-01 10 34606223 34606223 A T PARD3 Silent p.S962S 0.09 TCGA-YL-A9WX-01 10 35322104 35322104 G A CUL2 Missense_Mutation p.A386V 0.07 deleterious(0) possibly_damaging(0.895) TCGA-YL-A9WX-01 10 7780627 7780627 G A ITIH2 Silent p.P667P 0.10 TCGA-YL-A9WX-01 11 33581458 33581458 G A KIAA1549L Splice_Site p.X1043_splice 0.11 TCGA-YL-A9WX-01 12 53242522 53242522 G A KRT78 Missense_Mutation p.R65W 0.18 tolerated(0.2) benign(0.001) TCGA-YL-A9WX-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.10 deleterious(0) probably_damaging(1) TCGA-YL-A9WX-01 1 109756576 109756576 A G SARS 5'UTR 0.18 TCGA-YL-A9WX-01 1 38444715 38444715 G A SF3A3 Silent p.L258L 0.07 TCGA-YL-A9WX-01 20 60498514 60498514 C T CDH4 Silent p.V460V 0.11 TCGA-YL-A9WX-01 5 140182441 140182441 G A PCDHA3 Silent p.V553V 0.15 TCGA-YL-A9WX-01 5 73932281 73932281 C T ENC1 Silent p.K10K 0.11 TCGA-YL-A9WX-01 7 107394392 107394392 G A CBLL1 Missense_Mutation p.C112Y 0.06 deleterious(0.04) possibly_damaging(0.866) TCGA-YL-A9WX-01 9 123725995 123725995 T C C5 Silent p.E1414E 0.10 TCGA-YL-A9WY-01 10 3185630 3185630 C T PITRM1 Missense_Mutation p.V867M 0.24 tolerated(0.07) benign(0.311) TCGA-YL-A9WY-01 11 114450890 114450890 G A NXPE4 Missense_Mutation p.R355C 0.09 tolerated(0.05) benign(0.175) TCGA-YL-A9WY-01 11 20119208 20119208 G A NAV2 Missense_Mutation p.R2092H 0.14 deleterious(0) probably_damaging(0.997) TCGA-YL-A9WY-01 11 57569254 57569254 T C CTNND1 Missense_Mutation p.W336R 0.18 tolerated(0.16) probably_damaging(0.971) TCGA-YL-A9WY-01 11 58034735 58034735 G T OR10W1 Missense_Mutation p.A199D 0.10 deleterious(0) probably_damaging(0.951) TCGA-YL-A9WY-01 11 65792834 65792834 G A CATSPER1 Silent p.P339P 0.21 TCGA-YL-A9WY-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.13 deleterious(0) benign(0.361) TCGA-YL-A9WY-01 12 30790010 30790010 G A IPO8 Silent p.F867F 0.16 TCGA-YL-A9WY-01 12 56088563 56088563 G A ITGA7 Missense_Mutation p.A736V 0.11 tolerated(0.36) benign(0.003) TCGA-YL-A9WY-01 12 57963897 57963897 G A KIF5A Silent p.Q415Q 0.19 TCGA-YL-A9WY-01 14 45633602 45633602 T C FANCM Missense_Mutation p.V541A 0.08 deleterious(0) probably_damaging(0.978) TCGA-YL-A9WY-01 14 57075905 57075905 T C TMEM260 Missense_Mutation p.S240P 0.20 tolerated(0.1) probably_damaging(0.975) TCGA-YL-A9WY-01 16 603374 603374 A G CAPN15 Missense_Mutation p.N1040S 0.32 tolerated(0.55) probably_damaging(0.997) TCGA-YL-A9WY-01 16 81891938 81891938 G A PLCG2 Silent p.A136A 0.15 TCGA-YL-A9WY-01 17 42168661 42168661 C T HDAC5 Missense_Mutation p.R456Q 0.21 tolerated(0.31) probably_damaging(0.975) TCGA-YL-A9WY-01 17 7578400 7578400 G C TP53 Missense_Mutation p.P177R 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-YL-A9WY-01 1 16351304 16351304 G A CLCNKA Silent p.R92R 0.10 TCGA-YL-A9WY-01 1 201777624 201777624 G A NAV1 Silent p.S1308S 0.10 TCGA-YL-A9WY-01 20 5294673 5294673 C T PROKR2 Missense_Mutation p.V115M 0.25 deleterious(0) probably_damaging(0.97) TCGA-YL-A9WY-01 22 45564053 45564053 G A NUP50 5'UTR 0.05 TCGA-YL-A9WY-01 22 46806424 46806424 C T CELSR1 Missense_Mutation p.G1602S 0.05 deleterious(0) probably_damaging(1) TCGA-YL-A9WY-01 2 220354264 220354264 C G SPEG Missense_Mutation p.P2842A 0.09 probably_damaging(0.997) TCGA-YL-A9WY-01 2 74889931 74889931 C T SEMA4F Missense_Mutation p.R177W 0.24 deleterious(0) probably_damaging(0.991) TCGA-YL-A9WY-01 2 89309619 89309619 A G IGKV1-9 Missense_Mutation p.Y71H 0.22 deleterious_low_confidence(0.05) possibly_damaging(0.517) TCGA-YL-A9WY-01 2 99448880 99448880 G A KIAA1211L Silent p.D157D 0.23 TCGA-YL-A9WY-01 4 123848894 123848894 G T SPATA5 Missense_Mutation p.S90I 0.32 deleterious(0) possibly_damaging(0.873) TCGA-YL-A9WY-01 4 57889904 57889904 A G POLR2B Missense_Mutation p.Q948R 0.24 deleterious(0.02) benign(0.002) TCGA-YL-A9WY-01 4 9784459 9784459 C T DRD5 Missense_Mutation p.A269V 0.13 tolerated(0.05) benign(0.127) TCGA-YL-A9WY-01 5 140741242 140741242 G C PCDHGB2 Missense_Mutation p.V514L 0.21 tolerated(0.43) benign(0.162) TCGA-YL-A9WY-01 5 150028001 150028001 C T SYNPO Missense_Mutation p.P299L 0.10 deleterious_low_confidence(0.04) benign(0.024) TCGA-YL-A9WY-01 5 19473277 19473277 A C CDH18 3'UTR 0.27 TCGA-YL-A9WY-01 5 33459873 33459873 C T TARS Missense_Mutation p.S419L 0.16 deleterious(0) probably_damaging(0.997) TCGA-YL-A9WY-01 6 20113231 20113231 T C MBOAT1 Missense_Mutation p.Y362C 0.19 deleterious(0) probably_damaging(0.992) TCGA-YL-A9WY-01 7 25182283 25182283 T C C7orf31 Missense_Mutation p.T279A 0.19 deleterious(0) benign(0.338) TCGA-YL-A9WY-01 7 33573738 33573738 G A BBS9 Missense_Mutation p.R824H 0.13 deleterious(0.03) benign(0.019) TCGA-YL-A9WY-01 7 44799776 44799776 C T ZMIZ2 Silent p.G340G 0.11 TCGA-YL-A9WY-01 7 81339552 81339552 T G HGF Silent p.V484V 0.15 TCGA-YL-A9WY-01 8 131130463 131130463 G A ASAP1 Silent p.A608A 0.16 TCGA-YL-A9WY-01 8 2806865 2806865 T A CSMD1 Missense_Mutation p.D3453V 0.17 possibly_damaging(0.547) TCGA-YL-A9WY-01 9 15971695 15971695 T C CCDC171 Missense_Mutation p.L1281S 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-YL-A9WY-01 X 70349256 70349256 T G MED12 Missense_Mutation p.V1223G 0.52 probably_damaging(0.991) TCGA-ZG-A8QW-01 10 14909224 14909224 T C HSPA14 Missense_Mutation p.I379T 0.08 tolerated(0.22) benign(0.004) TCGA-ZG-A8QW-01 10 75567743 75567743 T C NDST2 Missense_Mutation p.Y135C 0.14 deleterious(0) probably_damaging(0.976) TCGA-ZG-A8QW-01 11 105797470 105797470 C T GRIA4 Silent p.S617S 0.07 TCGA-ZG-A8QW-01 11 20515515 20515515 G T PRMT3 Missense_Mutation p.R466S 0.12 benign(0.001) TCGA-ZG-A8QW-01 11 3423885 3423885 G A TSSC2 RNA 0.14 TCGA-ZG-A8QW-01 12 21919125 21919125 G A KCNJ8 Silent p.H269H 0.20 TCGA-ZG-A8QW-01 12 85270287 85270287 A G SLC6A15 Missense_Mutation p.F286L 0.07 tolerated(0.05) benign(0.036) TCGA-ZG-A8QW-01 13 103445972 103445972 G C KDELC1 Missense_Mutation p.H191Q 0.18 deleterious(0) probably_damaging(1) TCGA-ZG-A8QW-01 13 113899533 113899533 C T CUL4A Silent p.I504I 0.05 TCGA-ZG-A8QW-01 13 31727071 31727071 T G HSPH1 Silent p.T149T 0.22 TCGA-ZG-A8QW-01 13 37399674 37399674 T C RFXAP Splice_Site p.X236_splice 0.18 TCGA-ZG-A8QW-01 14 102793195 102793195 G A ZNF839 Missense_Mutation p.V388M 0.22 tolerated(0.26) benign(0.231) TCGA-ZG-A8QW-01 14 94053216 94053216 A T UNC79 Missense_Mutation p.Q821H 0.19 tolerated(0.13) possibly_damaging(0.718) TCGA-ZG-A8QW-01 15 24923886 24923886 C A NPAP1 Missense_Mutation p.P958T 0.14 tolerated(1) benign(0.031) TCGA-ZG-A8QW-01 15 65347485 65347485 G A RASL12 Missense_Mutation p.R185W 0.15 deleterious(0.03) benign(0.143) TCGA-ZG-A8QW-01 16 1291297 1291297 G T TPSAB1 Missense_Mutation p.V69L 0.11 deleterious(0.01) possibly_damaging(0.686) TCGA-ZG-A8QW-01 16 4873833 4873833 T C GLYR1 Missense_Mutation p.T205A 0.20 tolerated(0.37) benign(0.002) TCGA-ZG-A8QW-01 17 3806860 3806860 C T P2RX1 Missense_Mutation p.R197H 0.19 deleterious(0) possibly_damaging(0.9) TCGA-ZG-A8QW-01 18 12370900 12370900 T C AFG3L2 Silent p.G80G 0.13 TCGA-ZG-A8QW-01 18 22807246 22807246 C T ZNF521 Silent p.L212L 0.16 TCGA-ZG-A8QW-01 19 16038092 16038092 G A CYP4F11 Missense_Mutation p.T152M 0.08 deleterious(0.01) probably_damaging(0.957) TCGA-ZG-A8QW-01 19 40362965 40362965 C A FCGBP Silent p.V5035V 0.11 TCGA-ZG-A8QW-01 19 47219514 47219514 G A PRKD2 Silent p.I38I 0.10 TCGA-ZG-A8QW-01 19 49573389 49573389 G A KCNA7 Silent p.D434D 0.22 TCGA-ZG-A8QW-01 19 53117664 53117664 A G ZNF83 Silent p.L52L 0.12 TCGA-ZG-A8QW-01 19 7518423 7518423 C T ARHGEF18 Silent p.D454D 0.08 TCGA-ZG-A8QW-01 19 7927912 7927912 G A EVI5L Missense_Mutation p.V668M 0.25 tolerated(0.28) benign(0.022) TCGA-ZG-A8QW-01 1 150429782 150429782 A T RPRD2 Missense_Mutation p.N297Y 0.16 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-ZG-A8QW-01 1 155348170 155348170 A T ASH1L Silent p.V2078V 0.17 TCGA-ZG-A8QW-01 1 183604875 183604875 G A ARPC5 5'UTR 0.26 TCGA-ZG-A8QW-01 1 222838751 222838751 A T MIA3 Silent p.G1838G 0.05 TCGA-ZG-A8QW-01 22 41574665 41574665 G A EP300 Missense_Mutation p.R2317Q 0.16 possibly_damaging(0.885) TCGA-ZG-A8QW-01 2 120129876 120129877 - A DBI Frame_Shift_Ins p.Y146Ifs*19 0.13 TCGA-ZG-A8QW-01 3 120067730 120067730 T C LRRC58 Missense_Mutation p.S121G 0.22 tolerated(0.16) benign(0) TCGA-ZG-A8QW-01 3 179341804 179341804 T A NDUFB5 Silent p.S182S 0.05 TCGA-ZG-A8QW-01 4 177713364 177713364 G A VEGFC Silent p.S34S 0.12 TCGA-ZG-A8QW-01 4 2698141 2698141 C A FAM193A Missense_Mutation p.R819S 0.05 deleterious(0) benign(0.148) TCGA-ZG-A8QW-01 4 4419157 4419157 G C NSG1 Missense_Mutation p.A185P 0.14 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-ZG-A8QW-01 4 95561520 95561520 A T PDLIM5 Missense_Mutation p.Q430L 0.11 tolerated(0.17) benign(0.334) TCGA-ZG-A8QW-01 5 121187717 121187717 G A FTMT Missense_Mutation p.R20H 0.32 tolerated_low_confidence(0.12) benign(0.005) TCGA-ZG-A8QW-01 5 45261901 45261901 G A HCN1 3'UTR 0.29 TCGA-ZG-A8QW-01 7 132937913 132937914 - C EXOC4 Frame_Shift_Ins p.S21Lfs*14 0.17 TCGA-ZG-A8QW-01 8 131826458 131826458 G A ADCY8 Missense_Mutation p.R924C 0.19 deleterious(0) probably_damaging(0.993) TCGA-ZG-A8QW-01 8 135524840 135524840 G A ZFAT Missense_Mutation p.A1080V 0.06 tolerated(0.43) benign(0.007) TCGA-ZG-A8QW-01 8 22886093 22886093 C T TNFRSF10B Missense_Mutation p.V167I 0.05 tolerated(0.13) probably_damaging(0.934) TCGA-ZG-A8QW-01 9 37015117 37015117 A G PAX5 Missense_Mutation p.V96A 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZG-A8QX-01 10 55955442 55955442 C T PCDH15 Splice_Site p.X435_splice 0.31 TCGA-ZG-A8QX-01 11 64575501 64575501 A T MEN1 Missense_Mutation p.D177E 0.31 deleterious(0) probably_damaging(0.984) TCGA-ZG-A8QX-01 12 54448678 54448678 G C HOXC4 Missense_Mutation p.A162P 0.23 deleterious(0) probably_damaging(0.998) TCGA-ZG-A8QX-01 13 25348980 25348980 C T RNF17 Silent p.R85R 0.18 TCGA-ZG-A8QX-01 13 46733779 46733779 A G LCP1 Missense_Mutation p.S7P 0.19 deleterious(0.01) possibly_damaging(0.866) TCGA-ZG-A8QX-01 14 106207973 106207973 G A IGHG1 Missense_Mutation p.T277M 0.23 deleterious(0) probably_damaging(1) TCGA-ZG-A8QX-01 16 78064471 78064471 C T CLEC3A Silent p.D118D 0.15 TCGA-ZG-A8QX-01 17 42992620 42992620 G A GFAP Missense_Mutation p.R79C 0.09 deleterious(0) probably_damaging(0.969) TCGA-ZG-A8QX-01 17 47696689 47696689 A T SPOP Missense_Mutation p.Y87N 0.26 tolerated(0.1) probably_damaging(1) TCGA-ZG-A8QX-01 18 47801395 47801395 G A MBD1 Silent p.P310P 0.18 TCGA-ZG-A8QX-01 19 3653333 3653333 G A PIP5K1C Silent p.A292A 0.21 TCGA-ZG-A8QX-01 19 44891979 44891979 T C ZNF285 Missense_Mutation p.Q143R 0.19 tolerated(0.39) benign(0.008) TCGA-ZG-A8QX-01 19 50386969 50386969 A C TBC1D17 Missense_Mutation p.N365H 0.20 deleterious(0.02) probably_damaging(1) TCGA-ZG-A8QX-01 19 53344800 53344800 G A ZNF468 Silent p.G249G 0.21 TCGA-ZG-A8QX-01 19 56369989 56369989 C T NLRP4 Silent p.D410D 0.28 TCGA-ZG-A8QX-01 1 10725511 10725511 T - CASZ1 Frame_Shift_Del p.E45Gfs*43 0.30 TCGA-ZG-A8QX-01 1 232144702 232144702 C T DISC1 Silent p.S738S 0.40 TCGA-ZG-A8QX-01 1 232144704 232144704 A G DISC1 Missense_Mutation p.E739G 0.31 deleterious(0.03) benign(0.344) TCGA-ZG-A8QX-01 1 39924848 39924848 G A MACF1 Missense_Mutation p.R5037H 0.06 probably_damaging(0.954) TCGA-ZG-A8QX-01 1 50957466 50957466 C T FAF1 Missense_Mutation p.R501H 0.22 deleterious(0) probably_damaging(0.997) TCGA-ZG-A8QX-01 20 15918144 15918144 C T MACROD2 Missense_Mutation p.P288S 0.08 tolerated(0.06) benign(0.023) TCGA-ZG-A8QX-01 22 26422469 26422469 G A MYO18B Missense_Mutation p.A2177T 0.21 tolerated(0.27) benign(0.016) TCGA-ZG-A8QX-01 2 157182776 157182776 C T NR4A2 Missense_Mutation p.V476I 0.32 tolerated(0.1) benign(0.063) TCGA-ZG-A8QX-01 2 183622509 183622509 A G DNAJC10 Missense_Mutation p.I634V 0.07 tolerated(0.1) benign(0.371) TCGA-ZG-A8QX-01 2 214174863 214174863 G C SPAG16 Missense_Mutation p.M120I 0.14 tolerated(0.07) benign(0.266) TCGA-ZG-A8QX-01 2 45170030 45170030 G A SIX3 Missense_Mutation p.A263T 0.29 tolerated(0.14) probably_damaging(1) TCGA-ZG-A8QX-01 4 68358586 68358586 C T CENPC Splice_Site p.X807_splice 0.40 TCGA-ZG-A8QX-01 5 140756065 140756065 G T PCDHGA6 Missense_Mutation p.R805S 0.28 tolerated_low_confidence(0.8) benign(0) TCGA-ZG-A8QX-01 5 14678804 14678804 G A FAM105B Missense_Mutation p.V82I 0.19 deleterious(0.05) benign(0.047) TCGA-ZG-A8QX-01 5 37725056 37725056 C T WDR70 Missense_Mutation p.R540C 0.25 deleterious(0) probably_damaging(0.997) TCGA-ZG-A8QX-01 5 82937445 82937445 C T HAPLN1 Missense_Mutation p.G312D 0.20 deleterious(0) probably_damaging(0.994) TCGA-ZG-A8QX-01 7 92838015 92838015 G A HEPACAM2 Missense_Mutation p.P297L 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-ZG-A8QX-01 9 131231507 131231507 C T ODF2 Silent p.L99L 0.17 TCGA-ZG-A8QX-01 9 33262714 33262714 T A BAG1 Missense_Mutation p.K189I 0.17 deleterious(0) probably_damaging(0.991) TCGA-ZG-A8QX-01 X 73062517 73062517 C T XIST RNA 0.29 TCGA-ZG-A8QY-01 10 3177927 3177927 G A PFKP Splice_Site p.X708_splice 0.19 TCGA-ZG-A8QY-01 10 46113586 46113586 G C ZFAND4 Splice_Site p.X683_splice 0.30 TCGA-ZG-A8QY-01 11 118635928 118635928 A C DDX6 Missense_Mutation p.L212R 0.26 deleterious(0) possibly_damaging(0.562) TCGA-ZG-A8QY-01 11 126326257 126326257 C A KIRREL3 Missense_Mutation p.V279F 0.23 deleterious(0) possibly_damaging(0.875) TCGA-ZG-A8QY-01 11 82877752 82877752 A - PCF11 Frame_Shift_Del p.S606Afs*14 0.20 TCGA-ZG-A8QY-01 11 83676415 83676427 TGGGTTTGCCAAC - DLG2 Frame_Shift_Del p.V381Lfs*5 0.20 TCGA-ZG-A8QY-01 12 100811862 100811862 G T SLC17A8 Silent p.G451G 0.19 TCGA-ZG-A8QY-01 12 107914363 107914363 C A BTBD11 Missense_Mutation p.T412N 0.21 deleterious(0.02) benign(0.4) TCGA-ZG-A8QY-01 12 116972454 116972454 C G LINC00173 RNA 0.19 TCGA-ZG-A8QY-01 12 56359930 56359930 A C PMEL 5'Flank 0.24 TCGA-ZG-A8QY-01 12 62104129 62104129 A C FAM19A2 3'UTR 0.34 TCGA-ZG-A8QY-01 12 91572146 91572146 G T DCN Missense_Mutation p.L62I 0.28 tolerated(0.07) benign(0.008) TCGA-ZG-A8QY-01 13 114203965 114203965 C G TMCO3 3'UTR 0.22 TCGA-ZG-A8QY-01 13 23914995 23914995 T A SACS Missense_Mutation p.E1007V 0.23 benign(0.005) TCGA-ZG-A8QY-01 14 55844786 55844786 A G ATG14 Silent p.F334F 0.19 TCGA-ZG-A8QY-01 14 77492213 77492213 C A IRF2BPL Missense_Mutation p.K641N 0.21 deleterious(0) unknown(0) TCGA-ZG-A8QY-01 14 94527296 94527311 CTTTAATTAATTCCCA - DDX24 Frame_Shift_Del p.W449Kfs*6 0.26 TCGA-ZG-A8QY-01 15 40558520 40558520 C T PAK6 Missense_Mutation p.R228W 0.26 tolerated(0.11) benign(0.006) TCGA-ZG-A8QY-01 15 55790634 55790638 CGGGA - DYX1C1 5'UTR 0.50 TCGA-ZG-A8QY-01 15 91827401 91827401 A G SV2B Missense_Mutation p.N553S 0.18 tolerated(0.11) probably_damaging(0.999) TCGA-ZG-A8QY-01 16 1639732 1639732 G A IFT140 Silent p.S228S 0.32 TCGA-ZG-A8QY-01 16 70602298 70602298 T C SF3B3 Missense_Mutation p.I1022T 0.29 tolerated(0.09) benign(0.014) TCGA-ZG-A8QY-01 16 7568326 7568326 G A RBFOX1 Missense_Mutation p.A89T 0.24 tolerated(0.62) benign(0.018) TCGA-ZG-A8QY-01 16 87452473 87452473 G C ZCCHC14 Silent p.T223T 0.32 TCGA-ZG-A8QY-01 16 88878005 88878005 G C APRT Missense_Mutation p.A47G 0.31 deleterious(0.03) benign(0.371) TCGA-ZG-A8QY-01 17 47696424 47696424 G T SPOP Missense_Mutation p.F133L 0.30 tolerated(0.07) probably_damaging(0.992) TCGA-ZG-A8QY-01 17 61995198 61995198 G T GH1 Missense_Mutation p.S126R 0.22 tolerated(0.05) benign(0.168) TCGA-ZG-A8QY-01 17 663460 663460 T A GLOD4 Missense_Mutation p.S284C 0.26 deleterious(0) probably_damaging(1) TCGA-ZG-A8QY-01 17 7753140 7753146 AATGCCA - KDM6B Frame_Shift_Del p.N1148Rfs*2 0.33 TCGA-ZG-A8QY-01 17 9676090 9676090 A G DHRS7C Missense_Mutation p.W242R 0.18 deleterious(0.04) benign(0.002) TCGA-ZG-A8QY-01 19 38056575 38056575 T G ZNF571 Missense_Mutation p.E252A 0.37 deleterious(0.03) benign(0.052) TCGA-ZG-A8QY-01 19 43244510 43244510 G A PSG3 Silent p.C9C 0.29 TCGA-ZG-A8QY-01 19 45856355 45856355 T C ERCC2 Missense_Mutation p.E606G 0.30 deleterious(0) possibly_damaging(0.766) TCGA-ZG-A8QY-01 19 8175963 8175963 C T FBN3 Missense_Mutation p.E1397K 0.52 tolerated(0.25) benign(0.127) TCGA-ZG-A8QY-01 1 111983955 111983955 T C WDR77 Missense_Mutation p.N309S 0.24 tolerated(0.09) benign(0.006) TCGA-ZG-A8QY-01 1 154988264 154988264 C T ZBTB7B Silent p.C410C 0.19 TCGA-ZG-A8QY-01 1 156819190 156819190 G A INSRR Missense_Mutation p.A431V 0.21 tolerated(0.05) benign(0.006) TCGA-ZG-A8QY-01 1 220791998 220791998 A G MARK1 Silent p.L270L 0.38 TCGA-ZG-A8QY-01 1 223284141 223284141 G T TLR5 Missense_Mutation p.Q745K 0.12 tolerated(0.09) benign(0.081) TCGA-ZG-A8QY-01 1 228871654 228871654 C T RHOU Silent p.V55V 0.55 TCGA-ZG-A8QY-01 1 233394212 233394212 G A PCNXL2 Nonsense_Mutation p.Q466* 0.48 TCGA-ZG-A8QY-01 20 29632688 29632688 A G FRG1B Missense_Mutation p.K168R 0.04 tolerated(0.35) benign(0.118) TCGA-ZG-A8QY-01 20 37209850 37209850 T A ADIG 5'UTR 0.33 TCGA-ZG-A8QY-01 20 40126084 40126084 G C CHD6 Missense_Mutation p.I344M 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-ZG-A8QY-01 21 18966461 18966461 G A BTG3 Missense_Mutation p.H281Y 0.28 deleterious(0.02) possibly_damaging(0.794) TCGA-ZG-A8QY-01 21 45402296 45402296 C T AGPAT3 3'UTR 0.18 TCGA-ZG-A8QY-01 22 29141932 29141932 C G HSCB Missense_Mutation p.I168M 0.25 tolerated(0.05) benign(0.25) TCGA-ZG-A8QY-01 22 50754487 50754487 G A DENND6B Silent p.S223S 0.26 TCGA-ZG-A8QY-01 2 144381721 144381721 C T ARHGAP15 Silent p.D341D 0.26 TCGA-ZG-A8QY-01 2 162091959 162091959 T C TANK Missense_Mutation p.F403S 0.30 deleterious(0) possibly_damaging(0.888) TCGA-ZG-A8QY-01 2 167262080 167262080 G T SCN7A 3'UTR 0.30 TCGA-ZG-A8QY-01 2 171700581 171700581 T C GAD1 Missense_Mutation p.F222S 0.27 deleterious(0) probably_damaging(0.977) TCGA-ZG-A8QY-01 2 202725468 202725468 A C CDK15 Intron 0.25 TCGA-ZG-A8QY-01 2 207414876 207414876 C G ADAM23 Missense_Mutation p.H309D 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZG-A8QY-01 2 228883123 228883123 C T SPHKAP Missense_Mutation p.R816H 0.26 tolerated(0.54) benign(0) TCGA-ZG-A8QY-01 2 24990954 24990954 A C NCOA1 Intron 0.25 TCGA-ZG-A8QY-01 2 27680743 27680756 CTGGATGGTGCTTC - IFT172 Frame_Shift_Del p.K1022Sfs*4 0.23 TCGA-ZG-A8QY-01 3 115394932 115394932 G A GAP43 Missense_Mutation p.A71T 0.18 deleterious(0) probably_damaging(0.996) TCGA-ZG-A8QY-01 3 148916153 148916153 C G CP Splice_Site p.X571_splice 0.28 TCGA-ZG-A8QY-01 4 57842862 57842862 C A NOA1 Missense_Mutation p.G297V 0.13 tolerated(0.07) benign(0.008) TCGA-ZG-A8QY-01 5 131008040 131008040 T C FNIP1 Silent p.L699L 0.27 TCGA-ZG-A8QY-01 5 137219277 137219277 C A MYOT Missense_Mutation p.L341I 0.09 tolerated(1) benign(0.005) TCGA-ZG-A8QY-01 5 140256423 140256423 G A PCDHA12 Missense_Mutation p.A456T 0.24 tolerated_low_confidence(0.08) benign(0.142) TCGA-ZG-A8QY-01 5 179545631 179545631 G A RASGEF1C Missense_Mutation p.T354M 0.33 tolerated(0.13) probably_damaging(0.967) TCGA-ZG-A8QY-01 6 170871022 170871022 G A TBP Silent p.Q66Q 0.19 TCGA-ZG-A8QY-01 6 26124602 26124616 GCGCCGGTGTACCTG - HIST1H2AC In_Frame_Del p.P49_A53del 0.15 TCGA-ZG-A8QY-01 6 33652628 33652628 G C ITPR3 Missense_Mutation p.D1739H 0.18 tolerated(0.05) possibly_damaging(0.803) TCGA-ZG-A8QY-01 6 46658755 46658755 A C TDRD6 Missense_Mutation p.K964Q 0.30 deleterious(0.02) benign(0.178) TCGA-ZG-A8QY-01 6 54806506 54806506 A G FAM83B Missense_Mutation p.T913A 0.30 tolerated(0.37) benign(0.001) TCGA-ZG-A8QY-01 7 100679721 100679721 C A MUC17 Missense_Mutation p.A1675D 0.24 probably_damaging(0.979) TCGA-ZG-A8QY-01 7 140481405 140481405 A C BRAF Missense_Mutation p.F468C 0.16 deleterious(0) probably_damaging(0.957) TCGA-ZG-A8QY-01 7 151860195 151860195 T C KMT2C Silent p.Q3489Q 0.21 TCGA-ZG-A8QY-01 7 4876196 4876196 C T RADIL Silent p.A192A 0.14 TCGA-ZG-A8QY-01 9 130630242 130630242 C T AK1 3'UTR 0.13 TCGA-ZG-A8QY-01 9 131296231 131296231 G A GLE1 Splice_Site p.X549_splice 0.36 TCGA-ZG-A8QY-01 X 102508606 102508606 C T TCEAL8 Nonsense_Mutation p.W101* 0.51 TCGA-ZG-A8QZ-01 10 106014945 106014945 C G GSTO1 Missense_Mutation p.P20R 0.14 deleterious(0.03) benign(0.092) TCGA-ZG-A8QZ-01 12 70932775 70932775 C T PTPRB Missense_Mutation p.R1933Q 0.17 deleterious(0) probably_damaging(0.994) TCGA-ZG-A8QZ-01 13 39438593 39438593 T G FREM2 Silent p.P2611P 0.19 TCGA-ZG-A8QZ-01 13 46358044 46358044 G A SIAH3 Missense_Mutation p.A95V 0.35 tolerated(0.56) benign(0.007) TCGA-ZG-A8QZ-01 14 71540394 71540394 T C PCNX Missense_Mutation p.L1662P 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZG-A8QZ-01 15 85053127 85053127 T G GOLGA6L5P 3'Flank 0.31 TCGA-ZG-A8QZ-01 16 74670338 74670338 T C RFWD3 Silent p.V444V 0.14 TCGA-ZG-A8QZ-01 19 14580269 14580269 C T PKN1 Missense_Mutation p.S704L 0.06 tolerated(0.16) benign(0.008) TCGA-ZG-A8QZ-01 19 46443952 46443952 G A NOVA2 Silent p.N216N 0.14 TCGA-ZG-A8QZ-01 19 55994928 55994928 G T ZNF628 Missense_Mutation p.A790S 0.26 tolerated(0.21) unknown(0) TCGA-ZG-A8QZ-01 19 56369355 56369355 C T NLRP4 Missense_Mutation p.T199M 0.16 tolerated(0.06) benign(0.18) TCGA-ZG-A8QZ-01 1 15888748 15888748 C G DNAJC16 Silent p.V422V 0.10 TCGA-ZG-A8QZ-01 1 196759243 196759243 G T CFHR3 Missense_Mutation p.V228L 0.09 tolerated(0.74) possibly_damaging(0.557) TCGA-ZG-A8QZ-01 1 244217201 244217201 C T ZBTB18 Missense_Mutation p.A42V 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-ZG-A8QZ-01 1 55266618 55266618 G A TTC22 Silent p.G73G 0.27 TCGA-ZG-A8QZ-01 20 1961195 1961195 C T PDYN Missense_Mutation p.R180H 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZG-A8QZ-01 20 55099933 55099933 T G FAM209A Silent p.S23S 0.18 TCGA-ZG-A8QZ-01 22 39147338 39147338 G C SUN2 Missense_Mutation p.P55A 0.24 tolerated(0.07) probably_damaging(0.999) TCGA-ZG-A8QZ-01 22 40661041 40661041 A G TNRC6B Silent p.Q269Q 0.17 TCGA-ZG-A8QZ-01 2 32740210 32740210 T A BIRC6 Missense_Mutation p.H3574Q 0.25 benign(0.002) TCGA-ZG-A8QZ-01 2 74688764 74688764 C T MOGS Missense_Mutation p.D718N 0.06 tolerated(0.39) possibly_damaging(0.472) TCGA-ZG-A8QZ-01 3 39104561 39104561 T - WDR48 Frame_Shift_Del p.D23Efs*20 0.13 TCGA-ZG-A8QZ-01 3 77147467 77147467 C T ROBO2 Nonsense_Mutation p.R138* 0.12 TCGA-ZG-A8QZ-01 3 98109899 98109899 G A OR5K3 Silent p.L130L 0.18 TCGA-ZG-A8QZ-01 4 146686246 146686246 G A ZNF827 Missense_Mutation p.L1042F 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-ZG-A8QZ-01 5 140553634 140553634 G C PCDHB7 Missense_Mutation p.E406D 0.24 tolerated_low_confidence(0.17) benign(0.007) TCGA-ZG-A8QZ-01 5 141009253 141009253 G C HDAC3 Silent p.L158L 0.13 TCGA-ZG-A8QZ-01 5 150922533 150922533 G C FAT2 Missense_Mutation p.Q2719E 0.32 benign(0.002) TCGA-ZG-A8QZ-01 5 153144077 153144077 C A GRIA1 Missense_Mutation p.A646D 0.06 deleterious(0) probably_damaging(1) TCGA-ZG-A8QZ-01 6 167754223 167754223 C T TTLL2 Missense_Mutation p.R279W 0.27 deleterious(0.04) benign(0.373) TCGA-ZG-A8QZ-01 6 2680489 2680489 G A MYLK4 Nonsense_Mutation p.Q242* 0.19 TCGA-ZG-A8QZ-01 7 100817842 100817842 G A NAT16 Missense_Mutation p.R83C 0.26 deleterious(0.03) benign(0.08) TCGA-ZG-A8QZ-01 7 4901353 4901353 G A PAPOLB Missense_Mutation p.A29V 0.19 deleterious(0.01) benign(0.044) TCGA-ZG-A8QZ-01 9 14805023 14805023 C A FREM1 Missense_Mutation p.E1134D 0.05 tolerated(0.17) benign(0.15) TCGA-ZG-A8QZ-01 X 53576284 53576284 C A HUWE1 Missense_Mutation p.R3224L 0.05 benign(0.25) TCGA-ZG-A9KY-01 10 17645744 17645744 C T PTPLA Splice_Site p.X126_splice 0.10 TCGA-ZG-A9KY-01 10 46967543 46967543 C T SYT15 Silent p.S178S 0.08 TCGA-ZG-A9KY-01 11 116798051 116798051 C G SIK3 Missense_Mutation p.R109P 0.33 deleterious(0.01) possibly_damaging(0.742) TCGA-ZG-A9KY-01 11 122931348 122931348 T C HSPA8 Missense_Mutation p.M122V 0.15 deleterious_low_confidence(0.02) benign(0.003) TCGA-ZG-A9KY-01 11 5068207 5068207 T C OR52J3 Missense_Mutation p.V151A 0.17 deleterious(0.01) benign(0.026) TCGA-ZG-A9KY-01 11 55418538 55418538 T G OR4S2 Missense_Mutation p.F53L 0.04 tolerated(1) benign(0.001) TCGA-ZG-A9KY-01 12 23689453 23689453 C T SOX5 Missense_Mutation p.R641H 0.28 deleterious(0) probably_damaging(0.996) TCGA-ZG-A9KY-01 14 102391492 102391492 G A PPP2R5C Silent p.P517P 0.19 TCGA-ZG-A9KY-01 15 43821106 43821106 C T MAP1A Missense_Mutation p.R2479W 0.28 benign(0.039) TCGA-ZG-A9KY-01 15 63555769 63555769 C A RAB8B Missense_Mutation p.T192K 0.07 tolerated(0.13) benign(0.001) TCGA-ZG-A9KY-01 16 21629323 21629323 C T METTL9 Missense_Mutation p.P165L 0.24 tolerated(0.05) possibly_damaging(0.468) TCGA-ZG-A9KY-01 16 68025823 68025823 C T DPEP2 Missense_Mutation p.D194N 0.20 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9KY-01 17 37627854 37627855 - A CDK12 Frame_Shift_Ins p.T592Dfs*49 0.26 TCGA-ZG-A9KY-01 17 37646964 37646964 C T CDK12 Nonsense_Mutation p.Q696* 0.38 TCGA-ZG-A9KY-01 17 3786382 3786382 G A CAMKK1 Missense_Mutation p.A201V 0.06 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9KY-01 17 38252187 38252187 G A NR1D1 Missense_Mutation p.S253L 0.26 tolerated(0.23) benign(0.017) TCGA-ZG-A9KY-01 17 74621474 74621474 C T ST6GALNAC1 Missense_Mutation p.D581N 0.10 possibly_damaging(0.474) TCGA-ZG-A9KY-01 18 3597217 3597217 C T DLGAP1 Intron 0.24 TCGA-ZG-A9KY-01 19 10224931 10224931 C T PPAN-P2RY11 Silent p.C634C 0.33 TCGA-ZG-A9KY-01 19 11323863 11323863 C T DOCK6 Missense_Mutation p.E1494K 0.22 deleterious(0.02) possibly_damaging(0.701) TCGA-ZG-A9KY-01 19 22846975 22846975 C A ZNF492 Silent p.P168P 0.22 TCGA-ZG-A9KY-01 19 42187837 42187837 G A CEACAM7 Silent p.S195S 0.35 TCGA-ZG-A9KY-01 19 50214009 50214009 G A CPT1C Silent p.E587E 0.27 TCGA-ZG-A9KY-01 19 5040011 5040012 - A KDM4B Frame_Shift_Ins p.N103Kfs*14 0.21 TCGA-ZG-A9KY-01 19 5041160 5041160 G A KDM4B Silent p.P110P 0.24 TCGA-ZG-A9KY-01 19 52249967 52249967 C T FPR1 Missense_Mutation p.G94D 0.36 deleterious(0) probably_damaging(0.967) TCGA-ZG-A9KY-01 19 54445483 54445483 C T CACNG7 Missense_Mutation p.T255M 0.10 deleterious_low_confidence(0) possibly_damaging(0.508) TCGA-ZG-A9KY-01 1 149900679 149900681 AGC - MTMR11 3'UTR 0.24 TCGA-ZG-A9KY-01 1 156013896 156013896 G A UBQLN4 Missense_Mutation p.S340F 0.32 deleterious(0) possibly_damaging(0.758) TCGA-ZG-A9KY-01 1 158592846 158592846 C T SPTA1 Missense_Mutation p.R2016H 0.31 tolerated(0.05) benign(0.069) TCGA-ZG-A9KY-01 1 181680189 181680189 C T CACNA1E Silent p.A385A 0.26 TCGA-ZG-A9KY-01 1 186276296 186276296 C T PRG4 Missense_Mutation p.P482L 0.35 unknown(0) TCGA-ZG-A9KY-01 1 19468211 19468211 G A UBR4 Missense_Mutation p.P2747L 0.22 benign(0.008) TCGA-ZG-A9KY-01 1 19981506 19981506 G A NBL1 Missense_Mutation p.A30T 0.30 tolerated_low_confidence(0.26) benign(0.015) TCGA-ZG-A9KY-01 1 209963883 209963890 TCTCTCAA - IRF6 Frame_Shift_Del p.I337Tfs*14 0.22 TCGA-ZG-A9KY-01 1 235840908 235840908 T C LYST Missense_Mutation p.I3604M 0.30 tolerated(0.22) benign(0.008) TCGA-ZG-A9KY-01 1 26603902 26603902 G C CEP85 3'UTR 0.25 TCGA-ZG-A9KY-01 1 27742572 27742573 TT - WASF2 Frame_Shift_Del p.K148Ifs*10 0.13 TCGA-ZG-A9KY-01 1 35223665 35223665 C T GJB5 Missense_Mutation p.S245L 0.26 tolerated(0.29) benign(0) TCGA-ZG-A9KY-01 1 43909116 43909116 C T SZT2 Missense_Mutation p.P2808S 0.48 tolerated(0.5) benign(0.002) TCGA-ZG-A9KY-01 20 10603340 10603340 G A SLX4IP Silent p.T180T 0.27 TCGA-ZG-A9KY-01 20 3175950 3175950 T G DDRGK1 Missense_Mutation p.E187A 0.19 deleterious(0) probably_damaging(0.995) TCGA-ZG-A9KY-01 22 21156286 21156286 C T PI4KA Missense_Mutation p.D567N 0.23 deleterious(0.01) benign(0.443) TCGA-ZG-A9KY-01 22 29709922 29709922 C T RASL10A Missense_Mutation p.V92I 0.29 tolerated(0.15) probably_damaging(0.999) TCGA-ZG-A9KY-01 22 40803533 40803533 C T SGSM3 Silent p.D495D 0.08 TCGA-ZG-A9KY-01 22 47085927 47085927 G A CERK Silent p.C501C 0.48 TCGA-ZG-A9KY-01 2 190541783 190541786 AAAT - ANKAR Frame_Shift_Del p.N190Kfs*12 0.38 TCGA-ZG-A9KY-01 2 200137089 200137089 C T SATB2 Missense_Mutation p.A683T 0.25 tolerated_low_confidence(0.4) benign(0.015) TCGA-ZG-A9KY-01 2 218940430 218940430 G A RUFY4 Silent p.E425E 0.11 TCGA-ZG-A9KY-01 3 112080542 112080542 T C CD200 3'UTR 0.40 TCGA-ZG-A9KY-01 3 142272702 142272702 C A ATR Nonsense_Mutation p.E833* 0.17 TCGA-ZG-A9KY-01 3 38047368 38047368 G C VILL Missense_Mutation p.G679A 0.26 tolerated(0.06) possibly_damaging(0.651) TCGA-ZG-A9KY-01 3 44763153 44763153 C T ZNF502 Missense_Mutation p.L282F 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-ZG-A9KY-01 3 49662488 49662488 C T BSN Missense_Mutation p.T102I 0.32 unknown(0) TCGA-ZG-A9KY-01 4 155219106 155219106 C T DCHS2 Silent p.R1665R 0.20 TCGA-ZG-A9KY-01 4 155467028 155467028 G A PLRG1 Missense_Mutation p.P151L 0.35 tolerated(0.16) benign(0.012) TCGA-ZG-A9KY-01 4 15564984 15564984 G A CC2D2A Silent p.L1007L 0.40 TCGA-ZG-A9KY-01 4 22389682 22389682 G A GPR125 Silent p.N1204N 0.41 TCGA-ZG-A9KY-01 4 3134559 3134559 C T HTT Missense_Mutation p.A805V 0.43 benign(0.001) TCGA-ZG-A9KY-01 4 494202 494203 - CCACGCTG PIGG Frame_Shift_Ins p.P62Rfs*14 0.12 TCGA-ZG-A9KY-01 4 515658 515658 G C PIGG Silent p.L514L 0.14 TCGA-ZG-A9KY-01 4 887225 887225 C T GAK Silent p.V310V 0.12 TCGA-ZG-A9KY-01 4 95200079 95200080 - A SMARCAD1 Frame_Shift_Ins p.N770Kfs*28 0.34 TCGA-ZG-A9KY-01 6 29640720 29640720 A G ZFP57 Missense_Mutation p.S390P 0.35 tolerated(1) benign(0) TCGA-ZG-A9KY-01 6 32815728 32815728 G T TAP1 Missense_Mutation p.P630T 0.23 tolerated(0.5) benign(0.01) TCGA-ZG-A9KY-01 6 88299852 88299852 C T ORC3 5'Flank 0.30 TCGA-ZG-A9KY-01 7 100320382 100320382 G A EPO Silent p.P114P 0.19 TCGA-ZG-A9KY-01 7 128446848 128446848 G A CCDC136 Missense_Mutation p.C452Y 0.35 tolerated(0.53) benign(0.005) TCGA-ZG-A9KY-01 7 149148162 149148162 G A ZNF777 Missense_Mutation p.R339C 0.39 deleterious(0) probably_damaging(0.988) TCGA-ZG-A9KY-01 7 151877140 151877140 C - KMT2C Frame_Shift_Del p.S2408Hfs*44 0.17 TCGA-ZG-A9KY-01 7 2579435 2579435 G A BRAT1 Missense_Mutation p.P495S 0.19 tolerated(0.55) benign(0.05) TCGA-ZG-A9KY-01 7 86539140 86539140 C A KIAA1324L Missense_Mutation p.D783Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-ZG-A9KY-01 7 92970865 92970866 AG - CCDC132 Frame_Shift_Del p.R729Sfs*12 0.23 TCGA-ZG-A9KY-01 8 145154289 145154289 G A SHARPIN Silent p.V271V 0.23 TCGA-ZG-A9KY-01 8 51705355 51705355 C T SNTG1 Missense_Mutation p.S507F 0.27 deleterious_low_confidence(0) unknown(0) TCGA-ZG-A9KY-01 9 104124659 104124659 G - BAAT 3'UTR 0.38 TCGA-ZG-A9KY-01 X 117805041 117805041 G A DOCK11 Missense_Mutation p.R1711H 0.61 deleterious(0) possibly_damaging(0.896) TCGA-ZG-A9KY-01 X 147744151 147744151 C G AFF2 Missense_Mutation p.I301M 0.78 deleterious(0.02) benign(0.17) TCGA-ZG-A9KY-01 X 50345633 50345634 - T SHROOM4 Frame_Shift_Ins p.I1315Dfs*47 0.57 TCGA-ZG-A9L0-01 10 116919908 116919908 C T ATRNL1 Missense_Mutation p.H313Y 0.16 tolerated(1) benign(0.003) TCGA-ZG-A9L0-01 10 96448025 96448025 A C CYP2C18 Missense_Mutation p.T159P 0.46 deleterious(0) probably_damaging(0.977) TCGA-ZG-A9L0-01 11 105789611 105789611 C A GRIA4 Silent p.I481I 0.17 TCGA-ZG-A9L0-01 11 16007827 16007827 G A SOX6 Silent p.G682G 0.28 TCGA-ZG-A9L0-01 12 49434024 49434024 A - KMT2D Frame_Shift_Del p.V2510Afs*33 0.32 TCGA-ZG-A9L0-01 12 6690742 6690742 G A CHD4 Intron 0.28 TCGA-ZG-A9L0-01 12 80182523 80182523 A C PPP1R12A Missense_Mutation p.S903A 0.38 tolerated(0.42) benign(0.103) TCGA-ZG-A9L0-01 14 95081101 95081101 C T SERPINA3 Missense_Mutation p.T108M 0.45 deleterious(0.01) possibly_damaging(0.885) TCGA-ZG-A9L0-01 14 99969193 99969193 C G CCNK Missense_Mutation p.Q295E 0.29 tolerated(0.2) unknown(0) TCGA-ZG-A9L0-01 15 22473098 22473098 C T IGHV4OR15-8 Missense_Mutation p.R58H 0.10 deleterious(0.02) probably_damaging(0.981) TCGA-ZG-A9L0-01 16 784748 784748 G C NARFL Missense_Mutation p.S188C 0.47 deleterious(0) probably_damaging(0.992) TCGA-ZG-A9L0-01 17 41367895 41367895 C A TMEM106A Missense_Mutation p.Q122K 0.20 tolerated(0.48) benign(0.438) TCGA-ZG-A9L0-01 17 47696688 47696688 T A SPOP Missense_Mutation p.Y87F 0.33 tolerated(0.09) probably_damaging(1) TCGA-ZG-A9L0-01 17 65083153 65083153 G A HELZ Silent p.I1762I 0.17 TCGA-ZG-A9L0-01 17 66246273 66246289 AAGTCCCCAATGTAGAT - AMZ2 Intron 0.18 TCGA-ZG-A9L0-01 17 71232151 71232151 C T C17orf80 Missense_Mutation p.S177L 0.15 tolerated(0.22) probably_damaging(0.962) TCGA-ZG-A9L0-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.43 TCGA-ZG-A9L0-01 17 76450602 76450602 G T DNAH17 Silent p.I3438I 0.38 TCGA-ZG-A9L0-01 19 23328964 23328964 G A ZNF730 Missense_Mutation p.C373Y 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-ZG-A9L0-01 19 39899003 39899003 C G ZFP36 Silent p.P221P 0.39 TCGA-ZG-A9L0-01 19 52403374 52403374 A T ZNF649 5'UTR 0.22 TCGA-ZG-A9L0-01 19 53014268 53014268 T G ZNF578 Missense_Mutation p.F212V 0.36 deleterious(0.02) benign(0.121) TCGA-ZG-A9L0-01 1 197876315 197876315 A C C1orf53 Missense_Mutation p.K135Q 0.43 deleterious(0.03) benign(0.409) TCGA-ZG-A9L0-01 1 21188821 21188821 C T EIF4G3 Missense_Mutation p.R954H 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9L0-01 1 247150485 247150485 A C ZNF695 Silent p.A444A 0.33 TCGA-ZG-A9L0-01 1 248402787 248402787 C A OR2M4 Missense_Mutation p.P186H 0.09 tolerated(0.08) benign(0.012) TCGA-ZG-A9L0-01 1 42896273 42896274 TA - ZMYND12 3'UTR 0.17 TCGA-ZG-A9L0-01 1 45980652 45980652 C G PRDX1 Missense_Mutation p.K92N 0.34 deleterious(0) benign(0.053) TCGA-ZG-A9L0-01 20 31386422 31386422 C A DNMT3B Missense_Mutation p.F549L 0.14 tolerated(0.13) probably_damaging(0.984) TCGA-ZG-A9L0-01 20 42242496 42242496 C A IFT52 Silent p.L164L 0.10 TCGA-ZG-A9L0-01 20 42972025 42972025 C A R3HDML Missense_Mutation p.S130Y 0.08 deleterious(0) probably_damaging(0.92) TCGA-ZG-A9L0-01 20 42972036 42972036 C A R3HDML Missense_Mutation p.L134I 0.13 tolerated(0.27) possibly_damaging(0.643) TCGA-ZG-A9L0-01 22 36715609 36715609 G A MYH9 Nonsense_Mutation p.Q362* 0.26 TCGA-ZG-A9L0-01 2 220504357 220504357 G A SLC4A3 Silent p.A1086A 0.23 TCGA-ZG-A9L0-01 3 196311181 196311181 G T FBXO45 Missense_Mutation p.D285Y 0.30 deleterious(0.05) probably_damaging(1) TCGA-ZG-A9L0-01 3 49721883 49721883 G T MST1 Missense_Mutation p.T627K 0.06 deleterious(0.02) benign(0.152) TCGA-ZG-A9L0-01 4 83350461 83350461 T A HNRNPDL Missense_Mutation p.N128I 0.48 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-ZG-A9L0-01 5 140625165 140625165 C T PCDHB15 Missense_Mutation p.R7C 0.39 tolerated_low_confidence(0.14) benign(0.011) TCGA-ZG-A9L0-01 5 34796092 34796092 G T RAI14 Missense_Mutation p.M75I 0.04 tolerated(0.44) probably_damaging(0.995) TCGA-ZG-A9L0-01 6 47682675 47682675 C T GPR115 Missense_Mutation p.P565L 0.33 deleterious(0.01) probably_damaging(1) TCGA-ZG-A9L0-01 7 127013781 127013781 G A ZNF800 Missense_Mutation p.H537Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-ZG-A9L0-01 7 2582851 2582851 T G BRAT1 Missense_Mutation p.K304Q 0.21 deleterious(0.04) possibly_damaging(0.878) TCGA-ZG-A9L0-01 7 64438887 64438887 A G ZNF117 Silent p.I354I 0.07 TCGA-ZG-A9L0-01 8 42611170 42611171 TG - CHRNA6 Frame_Shift_Del p.H391Sfs*2 0.27 TCGA-ZG-A9L0-01 9 73240153 73240153 C T TRPM3 Missense_Mutation p.R576H 0.38 deleterious(0) probably_damaging(0.949) TCGA-ZG-A9L0-01 X 153626694 153626694 A C RPL10 5'UTR 0.65 TCGA-ZG-A9L0-01 X 70461117 70461117 G A ZMYM3 Missense_Mutation p.R1294C 0.62 deleterious(0) possibly_damaging(0.786) TCGA-ZG-A9L0-01 X 78619050 78619050 T C ITM2A Missense_Mutation p.E38G 0.67 deleterious(0.01) benign(0.118) TCGA-ZG-A9L0-01 X 8503766 8503766 A - KAL1 Frame_Shift_Del p.S570Lfs*13 0.47 TCGA-ZG-A9L1-01 10 129881179 129881179 G A PTPRE 3'UTR 0.32 TCGA-ZG-A9L1-01 10 73521610 73521610 G A C10orf54 Missense_Mutation p.R86C 0.08 deleterious(0) probably_damaging(0.934) TCGA-ZG-A9L1-01 11 102487662 102487663 CC - MMP20 Frame_Shift_Del p.G85Efs*19 0.26 TCGA-ZG-A9L1-01 11 31815294 31815294 C T PAX6 Silent p.Q288Q 0.51 TCGA-ZG-A9L1-01 11 47399911 47399911 G A SPI1 5'UTR 0.40 TCGA-ZG-A9L1-01 11 50003458 50003458 C A OR4C12 Missense_Mutation p.G194C 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZG-A9L1-01 11 994173 994173 G A AP2A2 Silent p.E628E 0.21 TCGA-ZG-A9L1-01 14 63447803 63447803 G A KCNH5 Silent p.N243N 0.23 TCGA-ZG-A9L1-01 15 45974776 45974776 C A SQRDL Missense_Mutation p.T322N 0.26 deleterious(0.02) benign(0.246) TCGA-ZG-A9L1-01 15 59480400 59480400 G A MYO1E Silent p.V607V 0.10 TCGA-ZG-A9L1-01 15 83456152 83456152 G C FSD2 5'UTR 0.28 TCGA-ZG-A9L1-01 16 4910855 4910855 C T UBN1 Missense_Mutation p.P288S 0.26 deleterious(0) probably_damaging(0.998) TCGA-ZG-A9L1-01 17 40837076 40837076 G A CNTNAP1 Missense_Mutation p.R144H 0.08 deleterious(0.01) probably_damaging(0.962) TCGA-ZG-A9L1-01 17 60038232 60038232 T A MED13 Missense_Mutation p.N1826Y 0.59 deleterious(0.01) possibly_damaging(0.747) TCGA-ZG-A9L1-01 17 7578443 7578443 A G TP53 Missense_Mutation p.Y163H 0.62 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9L1-01 18 43405696 43405696 G A SIGLEC15 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) benign(0.014) TCGA-ZG-A9L1-01 18 67365790 67365790 A G DOK6 Missense_Mutation p.Y187C 0.17 deleterious(0) probably_damaging(1) TCGA-ZG-A9L1-01 19 55699455 55699455 G A PTPRH Silent p.D822D 0.38 TCGA-ZG-A9L1-01 1 158911890 158911890 C G PYHIN1 Missense_Mutation p.Q235E 0.34 tolerated(0.27) benign(0.088) TCGA-ZG-A9L1-01 1 235324667 235324667 G A RBM34 5'UTR 0.30 TCGA-ZG-A9L1-01 1 32557412 32557412 C T TMEM39B Missense_Mutation p.R243W 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.729) TCGA-ZG-A9L1-01 20 11904136 11904136 A G BTBD3 Missense_Mutation p.D464G 0.37 tolerated(0.19) benign(0.05) TCGA-ZG-A9L1-01 21 11098732 11098732 C T BAGE2 RNA 0.25 TCGA-ZG-A9L1-01 2 160193564 160193564 C A BAZ2B Silent p.G1895G 0.10 TCGA-ZG-A9L1-01 2 160602322 160602322 A G MARCH7 Missense_Mutation p.M130V 0.35 tolerated(1) benign(0) TCGA-ZG-A9L1-01 2 219508077 219508077 G A ZNF142 Silent p.G1054G 0.38 TCGA-ZG-A9L1-01 2 232672262 232672262 G T COPS7B Missense_Mutation p.Q234H 0.20 tolerated(0.33) benign(0.001) TCGA-ZG-A9L1-01 2 89292206 89292206 G A IGKV1-8 Missense_Mutation p.R23W 0.31 deleterious(0.02) benign(0.001) TCGA-ZG-A9L1-01 3 113866343 113866344 - C DRD3 Frame_Shift_Ins p.R149Afs*25 0.28 TCGA-ZG-A9L1-01 3 39141919 39141919 A G GORASP1 Silent p.P214P 0.24 TCGA-ZG-A9L1-01 3 42956594 42956594 G A ZNF662 Nonsense_Mutation p.W369* 0.06 TCGA-ZG-A9L1-01 6 138428291 138428291 C T PERP Missense_Mutation p.E63K 0.23 tolerated(0.79) benign(0.038) TCGA-ZG-A9L1-01 6 152749370 152749370 G A SYNE1 Missense_Mutation p.A1649V 0.29 benign(0) TCGA-ZG-A9L1-01 6 17764397 17764397 C G KIF13A Missense_Mutation p.E1788Q 0.36 tolerated_low_confidence(0.35) benign(0.003) TCGA-ZG-A9L1-01 6 26545795 26545795 A G HMGN4 3'UTR 0.33 TCGA-ZG-A9L1-01 6 31117847 31117847 C A CCHCR1 Missense_Mutation p.G453V 0.28 deleterious(0.04) benign(0.153) TCGA-ZG-A9L1-01 7 97821361 97821362 TG - LMTK2 Frame_Shift_Del p.V529Pfs*12 0.29 TCGA-ZG-A9L1-01 8 25246690 25246690 G A DOCK5 Silent p.A1405A 0.40 TCGA-ZG-A9L1-01 9 113221318 113221318 G T SVEP1 Missense_Mutation p.P1133H 0.08 probably_damaging(1) TCGA-ZG-A9L2-01 10 89653814 89653814 C - PTEN Frame_Shift_Del p.P38Lfs*16 0.27 TCGA-ZG-A9L2-01 11 92085830 92085830 C T FAT3 Silent p.D184D 0.12 TCGA-ZG-A9L2-01 12 109536049 109536049 A C UNG Intron 0.13 TCGA-ZG-A9L2-01 12 95396517 95396517 A G NDUFA12 Missense_Mutation p.F56S 0.22 deleterious(0) probably_damaging(0.989) TCGA-ZG-A9L2-01 16 75668148 75668148 C T KARS Missense_Mutation p.A308T 0.20 deleterious(0) probably_damaging(0.995) TCGA-ZG-A9L2-01 17 56557586 56557586 T G HSF5 Missense_Mutation p.D198A 0.34 deleterious(0.01) possibly_damaging(0.743) TCGA-ZG-A9L2-01 17 62892435 62892435 T C LRRC37A3 Missense_Mutation p.N314S 0.16 tolerated(0.21) benign(0.088) TCGA-ZG-A9L2-01 17 76395604 76395604 C A PGS1 Missense_Mutation p.S229R 0.08 deleterious(0.02) benign(0.112) TCGA-ZG-A9L2-01 19 11144059 11144059 A C SMARCA4 Missense_Mutation p.I1214L 0.27 benign(0.012) TCGA-ZG-A9L2-01 1 111862949 111862949 C T CHIA Missense_Mutation p.A431V 0.18 tolerated(0.21) benign(0.19) TCGA-ZG-A9L2-01 1 152770577 152770577 G A LCE1D Missense_Mutation p.G103S 0.37 unknown(0) TCGA-ZG-A9L2-01 20 43141574 43141574 T A SERINC3 Missense_Mutation p.D88V 0.07 tolerated(0.07) benign(0.214) TCGA-ZG-A9L2-01 2 39262596 39262596 G A SOS1 Nonsense_Mutation p.R304* 0.07 TCGA-ZG-A9L2-01 2 73717486 73717486 T A ALMS1 Silent p.V2799V 0.21 TCGA-ZG-A9L2-01 3 10011467 10011468 - T EMC3 Frame_Shift_Ins p.M198Nfs*39 0.14 TCGA-ZG-A9L2-01 3 128990698 128990698 G A COPG1 Silent p.T644T 0.18 TCGA-ZG-A9L2-01 3 15749534 15749534 G C ANKRD28 Missense_Mutation p.Q452E 0.33 tolerated(0.07) benign(0.331) TCGA-ZG-A9L2-01 3 50330064 50330064 G A IFRD2 5'Flank 0.18 TCGA-ZG-A9L2-01 5 107700657 107700657 G T FBXL17 Missense_Mutation p.Q386K 0.24 tolerated(0.18) benign(0.37) TCGA-ZG-A9L2-01 5 140723673 140723673 G C PCDHGA3 Missense_Mutation p.E25Q 0.17 deleterious_low_confidence(0.04) benign(0.009) TCGA-ZG-A9L2-01 5 140723674 140723674 A T PCDHGA3 Missense_Mutation p.E25V 0.17 deleterious_low_confidence(0.01) benign(0.134) TCGA-ZG-A9L2-01 5 16675127 16675127 C T MYO10 Missense_Mutation p.R1600Q 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-ZG-A9L2-01 5 173317158 173317158 C A CPEB4 Missense_Mutation p.T141K 0.07 deleterious_low_confidence(0.03) benign(0.206) TCGA-ZG-A9L2-01 6 148865285 148865285 A T SASH1 Silent p.L893L 0.20 TCGA-ZG-A9L2-01 6 74063897 74063897 C T DPPA5 Missense_Mutation p.E18K 0.21 tolerated(0.17) benign(0.003) TCGA-ZG-A9L2-01 7 142334684 142334684 G A TRBV20-1 Missense_Mutation p.E36K 0.16 tolerated(0.2) benign(0.012) TCGA-ZG-A9L2-01 7 87160785 87160785 G A ABCB1 Missense_Mutation p.T837I 0.20 tolerated(0.54) benign(0.026) TCGA-ZG-A9L2-01 7 95167003 95167003 C T ASB4 Missense_Mutation p.P405S 0.11 deleterious(0.01) possibly_damaging(0.701) TCGA-ZG-A9L2-01 8 145998934 145998934 C A ZNF34 Missense_Mutation p.R467I 0.08 deleterious(0) probably_damaging(0.994) TCGA-ZG-A9L2-01 X 38229085 38229086 - T OTC Frame_Shift_Ins p.E87* 0.36 TCGA-ZG-A9L2-01 X 77528275 77528276 - TT CYSLTR1 Frame_Shift_Ins p.K324Rfs*67 0.38 TCGA-ZG-A9L4-01 10 60996414 60996414 G A PHYHIPL Missense_Mutation p.A159T 0.10 deleterious(0.01) possibly_damaging(0.783) TCGA-ZG-A9L4-01 11 123900679 123900679 T A OR10G8 Missense_Mutation p.M117K 0.09 deleterious(0) probably_damaging(0.997) TCGA-ZG-A9L4-01 11 57798830 57798830 T G OR6Q1 Missense_Mutation p.Y136D 0.09 deleterious(0) probably_damaging(0.994) TCGA-ZG-A9L4-01 14 74967622 74967622 C T LTBP2 Missense_Mutation p.E1811K 0.11 tolerated(0.79) benign(0.015) TCGA-ZG-A9L4-01 15 89860013 89860013 G A POLG Missense_Mutation p.S1230F 0.10 deleterious(0) probably_damaging(0.98) TCGA-ZG-A9L4-01 16 11017093 11017093 C T CIITA Missense_Mutation p.T1109M 0.07 deleterious(0.01) probably_damaging(0.972) TCGA-ZG-A9L4-01 16 28900176 28900176 G T ATP2A1 Missense_Mutation p.V333L 0.11 deleterious(0.04) benign(0.387) TCGA-ZG-A9L4-01 16 67914636 67914636 C T EDC4 Silent p.S758S 0.07 TCGA-ZG-A9L4-01 17 1960006 1960006 C T HIC1 Missense_Mutation p.P27S 0.17 deleterious(0.01) possibly_damaging(0.641) TCGA-ZG-A9L4-01 17 29850576 29850576 G A RAB11FIP4 Missense_Mutation p.E326K 0.06 deleterious(0) probably_damaging(0.986) TCGA-ZG-A9L4-01 17 38935974 38935974 G A KRT27 Missense_Mutation p.A275V 0.12 tolerated(0.08) benign(0.081) TCGA-ZG-A9L4-01 19 58232392 58232392 G A ZNF671 Silent p.S354S 0.06 TCGA-ZG-A9L4-01 19 6718310 6718310 G A C3 Silent p.S127S 0.15 TCGA-ZG-A9L4-01 19 9086886 9086886 G T MUC16 Silent p.V1643V 0.14 TCGA-ZG-A9L4-01 1 158735533 158735533 C A OR6N1 3'UTR 0.21 TCGA-ZG-A9L4-01 1 236966820 236966820 C T MTR Missense_Mutation p.R43W 0.06 deleterious(0) possibly_damaging(0.766) TCGA-ZG-A9L4-01 1 241904837 241904837 G A WDR64 Missense_Mutation p.M437I 0.11 tolerated(0.78) possibly_damaging(0.546) TCGA-ZG-A9L4-01 1 29639068 29639068 G C PTPRU Missense_Mutation p.G1036A 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-ZG-A9L4-01 20 16354924 16354924 G A KIF16B Silent p.L1110L 0.05 TCGA-ZG-A9L4-01 20 210386 210386 G T DEFB129 Nonsense_Mutation p.E176* 0.15 TCGA-ZG-A9L4-01 20 44673702 44673702 G T SLC12A5 Missense_Mutation p.A521S 0.04 deleterious(0.01) possibly_damaging(0.654) TCGA-ZG-A9L4-01 20 47850217 47850217 G A DDX27 Missense_Mutation p.R446H 0.06 tolerated(0.08) benign(0.206) TCGA-ZG-A9L4-01 2 137814077 137814077 G T THSD7B Missense_Mutation p.S76I 0.31 deleterious(0) possibly_damaging(0.607) TCGA-ZG-A9L4-01 4 118975475 118975475 T A NDST3 Nonsense_Mutation p.L137* 0.07 TCGA-ZG-A9L4-01 6 150067084 150067084 C A NUP43 Missense_Mutation p.D79Y 0.07 deleterious(0) probably_damaging(0.984) TCGA-ZG-A9L4-01 6 30525976 30525976 C T PRR3 Silent p.G52G 0.12 TCGA-ZG-A9L4-01 6 76022259 76022259 C T FILIP1 Missense_Mutation p.V1097M 0.05 tolerated(0.14) benign(0.009) TCGA-ZG-A9L4-01 7 141955354 141955354 C T PRSS58 Splice_Site p.X60_splice 0.18 TCGA-ZG-A9L4-01 7 143806760 143806760 C T OR2A2 Missense_Mutation p.L29F 0.05 tolerated(0.1) benign(0.06) TCGA-ZG-A9L4-01 8 144658675 144658675 C T NAPRT1 Missense_Mutation p.V317M 0.29 deleterious(0.02) probably_damaging(0.968) TCGA-ZG-A9L4-01 Y 4967265 4967265 G A PCDH11Y Missense_Mutation p.R549H 0.56 tolerated(0.21) benign(0.013) TCGA-ZG-A9L5-01 10 134664756 134664756 G A TTC40 Silent p.G1876G 0.21 TCGA-ZG-A9L5-01 10 16553115 16553115 C T PTER Missense_Mutation p.R304W 0.51 deleterious(0) probably_damaging(1) TCGA-ZG-A9L5-01 10 373036 373036 C T DIP2C Silent p.S1278S 0.09 TCGA-ZG-A9L5-01 10 70673848 70673848 C T DDX50 Missense_Mutation p.S326F 0.18 deleterious(0.02) probably_damaging(0.982) TCGA-ZG-A9L5-01 11 102987372 102987372 A G DYNC2H1 Missense_Mutation p.D232G 0.17 probably_damaging(0.993) TCGA-ZG-A9L5-01 11 107969215 107969215 G C CUL5 Missense_Mutation p.E703Q 0.10 deleterious(0.01) possibly_damaging(0.527) TCGA-ZG-A9L5-01 11 130781573 130781573 G A SNX19 Nonsense_Mutation p.Q590* 0.52 TCGA-ZG-A9L5-01 11 4703866 4703866 C T OR51E2 Missense_Mutation p.V26I 0.12 tolerated(1) benign(0) TCGA-ZG-A9L5-01 11 57886677 57886677 C A OR9I1 Missense_Mutation p.Q80H 0.26 deleterious(0.04) probably_damaging(0.954) TCGA-ZG-A9L5-01 11 61068375 61068375 G T DDB1 Missense_Mutation p.T1082K 0.63 tolerated(0.09) benign(0.01) TCGA-ZG-A9L5-01 11 7334874 7334874 C T SYT9 Missense_Mutation p.A249V 0.16 deleterious(0.02) possibly_damaging(0.666) TCGA-ZG-A9L5-01 12 113825600 113825600 C G PLBD2 Silent p.P497P 0.62 TCGA-ZG-A9L5-01 12 4722817 4722817 G A DYRK4 Silent p.K487K 0.25 TCGA-ZG-A9L5-01 12 49427951 49427951 G A KMT2D Missense_Mutation p.R3547C 0.08 probably_damaging(0.988) TCGA-ZG-A9L5-01 16 82132014 82132014 G T HSD17B2 Missense_Mutation p.M379I 0.18 tolerated(0.34) benign(0.013) TCGA-ZG-A9L5-01 17 10447217 10447217 A T MYH2 Splice_Site p.X216_splice 0.08 TCGA-ZG-A9L5-01 17 26604099 26604099 C T AC061975.8 5'Flank 0.11 TCGA-ZG-A9L5-01 17 37188096 37188096 T C CTD-2206N4.2 5'Flank 0.05 TCGA-ZG-A9L5-01 17 39406190 39406190 C T KRTAP9-4 Missense_Mutation p.P73L 0.19 deleterious(0.01) unknown(0) TCGA-ZG-A9L5-01 17 56329723 56329723 C A LPO Missense_Mutation p.R321S 0.16 deleterious(0.02) probably_damaging(0.984) TCGA-ZG-A9L5-01 19 54610362 54610362 C T TFPT Missense_Mutation p.D253N 0.64 tolerated_low_confidence(0.09) probably_damaging(0.99) TCGA-ZG-A9L5-01 1 158576500 158576500 C A OR10Z1 Missense_Mutation p.A91D 0.27 tolerated(0.06) benign(0.001) TCGA-ZG-A9L5-01 1 158597474 158597474 C A SPTA1 Missense_Mutation p.A1869S 0.27 tolerated(0.17) possibly_damaging(0.527) TCGA-ZG-A9L5-01 1 160388965 160388965 G A VANGL2 Silent p.T122T 0.30 TCGA-ZG-A9L5-01 1 171761359 171761359 G A METTL13 Silent p.L559L 0.34 TCGA-ZG-A9L5-01 1 196963263 196963263 A T CFHR5 Nonsense_Mutation p.K162* 0.57 TCGA-ZG-A9L5-01 1 21268268 21268268 G T EIF4G3 Missense_Mutation p.A410D 0.20 tolerated_low_confidence(0.33) benign(0.172) TCGA-ZG-A9L5-01 1 227203873 227203873 T G CDC42BPA Silent p.R1554R 0.06 TCGA-ZG-A9L5-01 1 228437698 228437698 G A OBSCN Missense_Mutation p.A1448T 0.20 benign(0.055) TCGA-ZG-A9L5-01 1 241723980 241723980 C A KMO Missense_Mutation p.P126H 0.26 deleterious(0) possibly_damaging(0.897) TCGA-ZG-A9L5-01 1 33583687 33583687 A C ADC Missense_Mutation p.H405P 0.58 tolerated(0.46) benign(0.001) TCGA-ZG-A9L5-01 1 4832550 4832550 G A AJAP1 Silent p.T376T 0.12 TCGA-ZG-A9L5-01 1 7724954 7724954 G A CAMTA1 Missense_Mutation p.V783M 0.06 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ZG-A9L5-01 20 25456805 25456805 G T NINL Missense_Mutation p.A1041D 0.11 tolerated(0.28) benign(0.069) TCGA-ZG-A9L5-01 2 179597209 179597209 C T TTN Missense_Mutation p.V5527I 0.41 TCGA-ZG-A9L5-01 2 190541595 190541595 G T ANKAR Missense_Mutation p.D127Y 0.62 deleterious(0) probably_damaging(1) TCGA-ZG-A9L5-01 2 228881480 228881480 C G SPHKAP Missense_Mutation p.V1364L 0.64 tolerated(0.61) benign(0.019) TCGA-ZG-A9L5-01 3 11070441 11070441 G A SLC6A1 Missense_Mutation p.A367T 0.08 deleterious(0.01) possibly_damaging(0.543) TCGA-ZG-A9L5-01 3 25611284 25611284 A T RARB Missense_Mutation p.T162S 0.63 tolerated(0.7) benign(0) TCGA-ZG-A9L5-01 3 52019884 52019884 A C ACY1 Missense_Mutation p.D94A 0.24 tolerated(0.08) benign(0.437) TCGA-ZG-A9L5-01 3 52246385 52246385 C T ALAS1 Missense_Mutation p.R571W 0.22 deleterious(0) probably_damaging(0.994) TCGA-ZG-A9L5-01 3 7728129 7728129 C T GRM7 Intron 0.08 TCGA-ZG-A9L5-01 4 156835552 156835552 T C TDO2 Silent p.F268F 0.08 TCGA-ZG-A9L5-01 4 184930876 184930876 G A STOX2 Nonsense_Mutation p.W295* 0.40 TCGA-ZG-A9L5-01 4 845557 845557 C A GAK Silent p.G1163G 0.40 TCGA-ZG-A9L5-01 5 140559154 140559154 C G PCDHB8 Missense_Mutation p.H513Q 0.22 tolerated_low_confidence(1) benign(0.002) TCGA-ZG-A9L5-01 6 109215691 109215691 G A ARMC2 Silent p.A231A 0.85 TCGA-ZG-A9L5-01 6 134350120 134350120 T C SLC2A12 Missense_Mutation p.I281M 0.33 deleterious(0) probably_damaging(0.981) TCGA-ZG-A9L5-01 6 151209057 151209057 C - MTHFD1L Frame_Shift_Del p.Q241Rfs*6 0.29 TCGA-ZG-A9L5-01 6 41029171 41029172 - G APOBEC2 Frame_Shift_Ins p.Q82Pfs*12 0.26 TCGA-ZG-A9L5-01 7 141719106 141719106 C T MGAM Silent p.V145V 0.24 TCGA-ZG-A9L5-01 7 95616435 95616435 C G DYNC1I1 Missense_Mutation p.R288G 0.03 deleterious(0) probably_damaging(0.996) TCGA-ZG-A9L5-01 9 129458808 129458808 C T LMX1B 3'UTR 0.29 TCGA-ZG-A9L5-01 9 131597626 131597626 G A CCBL1 Silent p.F366F 0.12 TCGA-ZG-A9L5-01 9 32632931 32632931 G C TAF1L Missense_Mutation p.L883V 0.04 deleterious(0.02) possibly_damaging(0.627) TCGA-ZG-A9L5-01 X 144904183 144904183 C T SLITRK2 Silent p.N80N 0.09 TCGA-ZG-A9L5-01 X 53621471 53621471 T C HUWE1 Missense_Mutation p.N1164S 0.27 benign(0.018) TCGA-ZG-A9L5-01 X 69253376 69253376 G A EDA Missense_Mutation p.E308K 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-ZG-A9L5-01 Y 22930773 22930773 G A RPS4Y2 Missense_Mutation p.R148H 0.89 tolerated(0.12) benign(0.07) TCGA-ZG-A9L6-01 10 11312644 11312644 A G CELF2 Missense_Mutation p.I212V 0.08 deleterious(0.02) benign(0.016) TCGA-ZG-A9L6-01 10 54531228 54531228 C T MBL2 Silent p.K56K 0.09 TCGA-ZG-A9L6-01 10 93590737 93590737 A C TNKS2 Silent p.R388R 0.13 TCGA-ZG-A9L6-01 11 65273824 65273824 G A MALAT1 RNA 0.19 TCGA-ZG-A9L6-01 11 76237544 76237544 G A C11orf30 Silent p.K620K 0.08 TCGA-ZG-A9L6-01 12 113875804 113875804 G A SDSL Missense_Mutation p.V304I 0.13 tolerated(0.53) benign(0.011) TCGA-ZG-A9L6-01 12 52284621 52284621 G A ANKRD33 Silent p.P297P 0.20 TCGA-ZG-A9L6-01 13 38159066 38159066 C G POSTN Splice_Site p.X299_splice 0.10 TCGA-ZG-A9L6-01 13 84454624 84454624 G T SLITRK1 Missense_Mutation p.P340H 0.06 deleterious(0.01) benign(0.195) TCGA-ZG-A9L6-01 14 103806053 103806053 G C EIF5 Missense_Mutation p.Q328H 0.15 tolerated(0.14) benign(0.004) TCGA-ZG-A9L6-01 14 22038732 22038732 A T OR10G3 Silent p.T48T 0.09 TCGA-ZG-A9L6-01 14 66083072 66083072 G A FUT8 Missense_Mutation p.D155N 0.13 tolerated(0.61) benign(0.007) TCGA-ZG-A9L6-01 15 43669217 43669217 G A TUBGCP4 Silent p.L112L 0.14 TCGA-ZG-A9L6-01 15 72039275 72039275 T C THSD4 Missense_Mutation p.L712P 0.20 deleterious(0.03) probably_damaging(0.953) TCGA-ZG-A9L6-01 16 23544062 23544062 G A EARS2 Missense_Mutation p.P328L 0.20 deleterious(0.02) benign(0.297) TCGA-ZG-A9L6-01 17 18833976 18833976 T A PRPSAP2 Missense_Mutation p.S359T 0.15 deleterious(0) possibly_damaging(0.792) TCGA-ZG-A9L6-01 17 47696432 47696432 A G SPOP Missense_Mutation p.W131R 0.15 tolerated(0.1) probably_damaging(0.999) TCGA-ZG-A9L6-01 19 22605037 22605037 G A ZNF98 5'UTR 0.11 TCGA-ZG-A9L6-01 19 3643249 3643249 C T PIP5K1C Silent p.P547P 0.10 TCGA-ZG-A9L6-01 19 55824409 55824409 C T TMEM150B Missense_Mutation p.A174T 0.18 tolerated(0.4) benign(0.017) TCGA-ZG-A9L6-01 1 151773576 151773576 C T LINGO4 Silent p.V535V 0.14 TCGA-ZG-A9L6-01 1 18961619 18961619 G T PAX7 Silent p.P112P 0.05 TCGA-ZG-A9L6-01 1 201185695 201185695 G A IGFN1 Missense_Mutation p.V3137M 0.13 possibly_damaging(0.559) TCGA-ZG-A9L6-01 1 209773408 209773408 C A CAMK1G Missense_Mutation p.P58H 0.14 tolerated(0.12) probably_damaging(1) TCGA-ZG-A9L6-01 1 216138762 216138762 T C USH2A Silent p.T2339T 0.11 TCGA-ZG-A9L6-01 1 46032655 46032655 C G AKR1A1 Missense_Mutation p.L107V 0.10 tolerated(0.09) benign(0.089) TCGA-ZG-A9L6-01 1 9107756 9107756 C T SLC2A5 Missense_Mutation p.V111M 0.11 deleterious(0.04) possibly_damaging(0.88) TCGA-ZG-A9L6-01 20 21689273 21689273 C T PAX1 Missense_Mutation p.P332S 0.07 tolerated_low_confidence(0.09) benign(0.074) TCGA-ZG-A9L6-01 20 44054316 44054316 C A PIGT Silent p.I529I 0.10 TCGA-ZG-A9L6-01 20 45003941 45003941 G T ELMO2 Silent p.A333A 0.11 TCGA-ZG-A9L6-01 22 28194061 28194061 C A MN1 Missense_Mutation p.C824F 0.13 probably_damaging(0.997) TCGA-ZG-A9L6-01 2 148733543 148733543 T A ORC4 Intron 0.17 TCGA-ZG-A9L6-01 2 176988946 176988946 G T HOXD9 3'UTR 0.21 TCGA-ZG-A9L6-01 3 49412958 49412958 A C RHOA Missense_Mutation p.L22R 0.14 deleterious(0.01) probably_damaging(0.919) TCGA-ZG-A9L6-01 4 123534029 123534030 TT - IL21 Frame_Shift_Del p.R139Ifs*16 0.17 TCGA-ZG-A9L6-01 4 49005949 49005949 A G CWH43 Missense_Mutation p.T334A 0.13 deleterious(0.03) probably_damaging(0.916) TCGA-ZG-A9L6-01 5 140229383 140229383 C G PCDHA9 Missense_Mutation p.L435V 0.10 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-ZG-A9L6-01 6 149826699 149826699 G A PPIL4 Missense_Mutation p.H457Y 0.13 tolerated(0.78) benign(0) TCGA-ZG-A9L6-01 6 2892126 2892126 C T SERPINB9 Missense_Mutation p.A222T 0.11 tolerated(0.32) benign(0.041) TCGA-ZG-A9L6-01 8 38021122 38021122 C T LSM1 3'UTR 0.37 TCGA-ZG-A9L6-01 9 136573529 136573529 C T SARDH Silent p.T450T 0.17 TCGA-ZG-A9L6-01 9 35616600 35616600 G A CD72 Missense_Mutation p.R117C 0.16 deleterious(0) probably_damaging(0.939) TCGA-ZG-A9L6-01 9 4722560 4722560 G A AK3 Missense_Mutation p.R73W 0.06 deleterious(0.02) benign(0.165) TCGA-ZG-A9L6-01 X 79945312 79945312 A G BRWD3 Silent p.Y1254Y 0.20 TCGA-ZG-A9L9-01 10 100152747 100152747 C T PYROXD2 Silent p.A293A 0.28 TCGA-ZG-A9L9-01 10 105452823 105452823 G - SH3PXD2A Intron 0.27 TCGA-ZG-A9L9-01 10 5498782 5498782 C T NET1 Missense_Mutation p.S539F 0.32 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-ZG-A9L9-01 10 64893127 64893127 A C NRBF2 5'UTR 0.33 TCGA-ZG-A9L9-01 10 7763669 7763669 G A ITIH2 Missense_Mutation p.E266K 0.20 tolerated(0.17) benign(0.066) TCGA-ZG-A9L9-01 11 67198879 67198879 G A RPS6KB2 Missense_Mutation p.R117Q 0.33 deleterious(0.02) benign(0.008) TCGA-ZG-A9L9-01 11 75440013 75440013 C T MOGAT2 Missense_Mutation p.R277C 0.39 deleterious(0.04) probably_damaging(0.992) TCGA-ZG-A9L9-01 12 100706286 100706286 A G SCYL2 Missense_Mutation p.E236G 0.11 deleterious(0) probably_damaging(1) TCGA-ZG-A9L9-01 14 65253586 65253586 C A SPTB Missense_Mutation p.G1033C 0.23 tolerated(0.08) possibly_damaging(0.563) TCGA-ZG-A9L9-01 15 35529979 35529979 C T ANP32AP1 RNA 0.52 TCGA-ZG-A9L9-01 15 70949382 70949382 T C UACA 3'UTR 0.25 TCGA-ZG-A9L9-01 16 2160678 2160678 C A PKD1 Missense_Mutation p.S1497I 0.07 benign(0.315) TCGA-ZG-A9L9-01 16 56669854 56669854 C T MT1M 3'Flank 0.47 TCGA-ZG-A9L9-01 17 10258003 10258003 C T MYH13 Silent p.A333A 0.49 TCGA-ZG-A9L9-01 17 10408611 10408611 A G MYH1 Silent p.F768F 0.26 TCGA-ZG-A9L9-01 17 8638450 8638450 C A CCDC42 Missense_Mutation p.E279D 0.18 tolerated(0.59) benign(0.009) TCGA-ZG-A9L9-01 18 43258968 43258990 CCTGGCTAACATGTTATCTGTGG - SLC14A2 Splice_Site p.X847_splice 0.15 TCGA-ZG-A9L9-01 19 37211064 37211064 C T ZNF567 Missense_Mutation p.P449S 0.44 tolerated(0.9) probably_damaging(0.998) TCGA-ZG-A9L9-01 1 117303203 117303203 G T CD2 Missense_Mutation p.A188S 0.06 deleterious(0.05) probably_damaging(0.999) TCGA-ZG-A9L9-01 1 177001904 177001904 G A ASTN1 Missense_Mutation p.R185W 0.15 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-ZG-A9L9-01 1 181741295 181741295 C T CACNA1E Silent p.N1689N 0.35 TCGA-ZG-A9L9-01 1 237947648 237947648 C T RYR2 Silent p.N4212N 0.36 TCGA-ZG-A9L9-01 1 248457988 248457988 G A OR2T12 Missense_Mutation p.A298V 0.40 deleterious(0.02) probably_damaging(0.945) TCGA-ZG-A9L9-01 1 6279431 6279431 G C RNF207 Silent p.G623G 0.32 TCGA-ZG-A9L9-01 21 38564418 38564418 G C TTC3 Missense_Mutation p.Q1707H 0.15 deleterious(0.03) benign(0.016) TCGA-ZG-A9L9-01 22 42473682 42473682 C A FAM109B Missense_Mutation p.R129S 0.19 deleterious(0.02) benign(0.028) TCGA-ZG-A9L9-01 2 113818430 113818430 A G IL36RN Missense_Mutation p.M11V 0.50 deleterious(0.02) benign(0.263) TCGA-ZG-A9L9-01 2 132912310 132912310 C T ANKRD30BL Missense_Mutation p.R180K 0.29 tolerated(0.83) benign(0.001) TCGA-ZG-A9L9-01 2 145147439 145147439 T C ZEB2 Missense_Mutation p.N1075S 0.44 deleterious(0) possibly_damaging(0.679) TCGA-ZG-A9L9-01 2 169783826 169783826 C T ABCB11 Missense_Mutation p.R1153H 0.38 deleterious(0.01) probably_damaging(1) TCGA-ZG-A9L9-01 2 242607594 242607594 G A ATG4B Missense_Mutation p.G257R 0.22 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9L9-01 3 142416908 142416908 A G PLS1 Missense_Mutation p.K457R 0.42 tolerated(0.06) possibly_damaging(0.721) TCGA-ZG-A9L9-01 3 195953981 195953981 G A SLC51A Silent p.S93S 0.07 TCGA-ZG-A9L9-01 3 46063378 46063378 G A XCR1 Missense_Mutation p.P21L 0.45 tolerated(1) benign(0) TCGA-ZG-A9L9-01 3 49211747 49211747 G A KLHDC8B Missense_Mutation p.R151H 0.04 tolerated(0.12) benign(0.397) TCGA-ZG-A9L9-01 4 141481157 141481157 G T UCP1 Missense_Mutation p.P273T 0.28 deleterious(0) possibly_damaging(0.899) TCGA-ZG-A9L9-01 4 22389867 22389867 T C GPR125 Missense_Mutation p.T1143A 0.37 tolerated(0.17) probably_damaging(0.98) TCGA-ZG-A9L9-01 4 74365745 74365745 T C AFM Missense_Mutation p.C483R 0.34 deleterious(0) probably_damaging(1) TCGA-ZG-A9L9-01 5 158696047 158696047 C T UBLCP1 Missense_Mutation p.R42C 0.10 deleterious(0) probably_damaging(0.966) TCGA-ZG-A9L9-01 5 23522743 23522743 T G PRDM9 Missense_Mutation p.F211V 0.17 deleterious(0) benign(0.246) TCGA-ZG-A9L9-01 6 43225665 43225665 C T TTBK1 Missense_Mutation p.P326L 0.25 probably_damaging(0.957) TCGA-ZG-A9L9-01 6 88240517 88240517 G A RARS2 Silent p.Y252Y 0.33 TCGA-ZG-A9L9-01 7 102967014 102967014 G T DNAJC2 Missense_Mutation p.T183N 0.20 tolerated(0.36) benign(0.004) TCGA-ZG-A9L9-01 7 131012753 131012753 C G MKLN1 Missense_Mutation p.P32R 0.24 deleterious(0) probably_damaging(0.983) TCGA-ZG-A9L9-01 7 99757654 99757654 C T GAL3ST4 Missense_Mutation p.R453H 0.35 deleterious(0) probably_damaging(0.992) TCGA-ZG-A9L9-01 8 12957110 12957110 G A DLC1 Silent p.H912H 0.09 TCGA-ZG-A9L9-01 8 20110545 20110545 C T LZTS1 Silent p.P299P 0.40 TCGA-ZG-A9L9-01 8 66605935 66605935 G A MTFR1 Silent p.A74A 0.08 TCGA-ZG-A9L9-01 9 139995994 139995994 C T MAN1B1 Missense_Mutation p.S375L 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-ZG-A9LB-01 10 100174940 100174940 G A PYROXD2 5'UTR 0.64 TCGA-ZG-A9LB-01 10 25887113 25887113 C T GPR158 Missense_Mutation p.S853L 0.33 tolerated(0.62) benign(0.002) TCGA-ZG-A9LB-01 10 26581861 26581861 A T GAD2 Missense_Mutation p.I509F 0.42 tolerated(0.11) benign(0.105) TCGA-ZG-A9LB-01 10 71634886 71634886 G A COL13A1 Silent p.G134G 0.17 TCGA-ZG-A9LB-01 10 99517472 99517472 G C ZFYVE27 Missense_Mutation p.G393A 0.20 deleterious(0) probably_damaging(0.978) TCGA-ZG-A9LB-01 11 18266952 18266952 C T SAA2 Missense_Mutation p.R114Q 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-ZG-A9LB-01 11 64121525 64121525 C T CCDC88B Missense_Mutation p.R1328W 0.55 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9LB-01 11 64884693 64884693 T G ZNHIT2 Missense_Mutation p.N145H 0.23 tolerated(0.12) benign(0.039) TCGA-ZG-A9LB-01 11 66133974 66133974 C A SLC29A2 Missense_Mutation p.E265D 0.28 tolerated(0.15) possibly_damaging(0.761) TCGA-ZG-A9LB-01 11 92616460 92616460 G A FAT3 Missense_Mutation p.V4280M 0.11 possibly_damaging(0.684) TCGA-ZG-A9LB-01 12 122277717 122277717 G T HPD Missense_Mutation p.L367M 0.11 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9LB-01 12 48919555 48919555 C T OR8S1 Silent p.L47L 0.08 TCGA-ZG-A9LB-01 12 6878832 6878834 GTG - PTMS In_Frame_Del p.V38del 0.58 TCGA-ZG-A9LB-01 12 7014862 7014862 A G LRRC23 Missense_Mutation p.D22G 0.09 deleterious_low_confidence(0.05) unknown(0) TCGA-ZG-A9LB-01 12 91357953 91357953 G A EPYC Missense_Mutation p.P317S 0.05 deleterious(0) possibly_damaging(0.889) TCGA-ZG-A9LB-01 13 53313814 53313814 A G LECT1 Missense_Mutation p.V8A 0.13 deleterious(0.02) possibly_damaging(0.6) TCGA-ZG-A9LB-01 14 38061329 38061329 G C FOXA1 Missense_Mutation p.H220Q 0.35 deleterious(0) probably_damaging(1) TCGA-ZG-A9LB-01 14 55241684 55241684 C T SAMD4A Missense_Mutation p.T583M 0.08 deleterious(0.02) possibly_damaging(0.875) TCGA-ZG-A9LB-01 14 92471719 92471719 T G TRIP11 Missense_Mutation p.E867D 0.42 deleterious(0) probably_damaging(0.998) TCGA-ZG-A9LB-01 15 102182733 102182733 C T TM2D3 Silent p.L231L 0.39 TCGA-ZG-A9LB-01 15 72292256 72292256 G C MYO9A Missense_Mutation p.A469G 0.06 deleterious(0) possibly_damaging(0.673) TCGA-ZG-A9LB-01 16 14951380 14951380 G A NOMO1 Missense_Mutation p.G363D 0.05 deleterious(0) probably_damaging(0.983) TCGA-ZG-A9LB-01 16 3306350 3306350 G A MEFV Missense_Mutation p.R80C 0.14 deleterious(0) probably_damaging(0.954) TCGA-ZG-A9LB-01 16 3405944 3405944 G T OR2C1 Missense_Mutation p.D2Y 0.16 deleterious(0.01) benign(0.163) TCGA-ZG-A9LB-01 16 89789911 89789911 C T ZNF276 Missense_Mutation p.T267M 0.45 tolerated(0.19) benign(0.009) TCGA-ZG-A9LB-01 17 10298623 10298623 C T MYH8 Missense_Mutation p.V1597M 0.21 tolerated(0.07) benign(0.305) TCGA-ZG-A9LB-01 17 31618456 31618456 G A ASIC2 Silent p.G226G 0.16 TCGA-ZG-A9LB-01 17 38910708 38910708 T C KRT25 Missense_Mutation p.T148A 0.12 deleterious(0.04) benign(0.158) TCGA-ZG-A9LB-01 17 48600356 48600356 C A MYCBPAP Silent p.T481T 0.24 TCGA-ZG-A9LB-01 17 61615448 61615448 C T KCNH6 Silent p.F508F 0.29 TCGA-ZG-A9LB-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.45 deleterious(0) probably_damaging(1) TCGA-ZG-A9LB-01 18 39623766 39623767 - A PIK3C3 Nonsense_Mutation p.Y725* 0.15 TCGA-ZG-A9LB-01 19 2222434 2222434 G A DOT1L Missense_Mutation p.R1089Q 0.40 deleterious_low_confidence(0.03) probably_damaging(0.975) TCGA-ZG-A9LB-01 19 41132932 41132932 G A LTBP4 Silent p.P1412P 0.13 TCGA-ZG-A9LB-01 1 12253152 12253152 G A TNFRSF1B Missense_Mutation p.V262I 0.18 tolerated(1) benign(0.003) TCGA-ZG-A9LB-01 1 158549149 158549149 T G OR10X1 Silent p.R181R 0.07 TCGA-ZG-A9LB-01 1 159284386 159284386 G A OR10J3 Missense_Mutation p.R22W 0.13 deleterious(0.02) benign(0) TCGA-ZG-A9LB-01 1 181759691 181759691 T C CACNA1E Missense_Mutation p.L1966P 0.10 tolerated(0.17) benign(0.094) TCGA-ZG-A9LB-01 1 19501477 19501477 C T UBR4 Missense_Mutation p.E942K 0.36 possibly_damaging(0.526) TCGA-ZG-A9LB-01 1 43162925 43162925 A C YBX1 Silent p.R244R 0.20 TCGA-ZG-A9LB-01 1 8022930 8022930 G A PARK7 Missense_Mutation p.A29T 0.10 deleterious(0) possibly_damaging(0.895) TCGA-ZG-A9LB-01 20 17934737 17934737 C T SNX5 Missense_Mutation p.D98N 0.20 tolerated(0.1) benign(0.045) TCGA-ZG-A9LB-01 20 390566 390566 G A RBCK1 Missense_Mutation p.G22R 0.14 deleterious(0.02) probably_damaging(0.96) TCGA-ZG-A9LB-01 2 137814461 137814461 G A THSD7B Missense_Mutation p.R204H 0.20 deleterious(0) probably_damaging(0.989) TCGA-ZG-A9LB-01 2 141291620 141291620 C T LRP1B Missense_Mutation p.G2578R 0.06 probably_damaging(0.989) TCGA-ZG-A9LB-01 3 41266227 41266227 C T CTNNB1 Missense_Mutation p.T75I 0.14 tolerated(0.15) benign(0.261) TCGA-ZG-A9LB-01 3 48641726 48641726 G A UQCRC1 Missense_Mutation p.A189V 0.25 deleterious(0) probably_damaging(0.952) TCGA-ZG-A9LB-01 3 9000636 9000636 A G RAD18 Missense_Mutation p.I34T 0.12 tolerated(0.05) possibly_damaging(0.557) TCGA-ZG-A9LB-01 4 145567787 145567787 C G HHIP 5'UTR 0.24 TCGA-ZG-A9LB-01 4 55603399 55603399 C T KIT Nonsense_Mutation p.Q919* 0.20 TCGA-ZG-A9LB-01 5 143545158 143545158 C G YIPF5 Missense_Mutation p.G41R 0.18 tolerated(0.22) benign(0.035) TCGA-ZG-A9LB-01 5 179135237 179135237 T G CANX Intron 0.23 TCGA-ZG-A9LB-01 5 78587011 78587011 G A JMY Silent p.A472A 0.19 TCGA-ZG-A9LB-01 5 79355291 79355291 C T THBS4 Missense_Mutation p.T254I 0.33 tolerated(0.07) probably_damaging(0.997) TCGA-ZG-A9LB-01 6 160679379 160679379 G A SLC22A2 Silent p.T137T 0.21 TCGA-ZG-A9LB-01 6 47680273 47680273 G A GPR115 Missense_Mutation p.A161T 0.13 deleterious(0.01) probably_damaging(0.929) TCGA-ZG-A9LB-01 6 55360386 55360386 C T HMGCLL1 Missense_Mutation p.G239D 0.13 tolerated(1) possibly_damaging(0.7) TCGA-ZG-A9LB-01 6 57013182 57013182 G A ZNF451 Missense_Mutation p.D767N 0.32 tolerated(0.1) benign(0.063) TCGA-ZG-A9LB-01 7 100457538 100457538 C T SLC12A9 Missense_Mutation p.R337C 0.12 deleterious(0.01) possibly_damaging(0.67) TCGA-ZG-A9LB-01 7 131848926 131848926 C T PLXNA4 Missense_Mutation p.R1492H 0.18 deleterious(0) possibly_damaging(0.897) TCGA-ZG-A9LB-01 8 38205427 38205427 G C WHSC1L1 Nonsense_Mutation p.S88* 0.03 TCGA-ZG-A9LB-01 8 48802925 48802925 T C PRKDC Missense_Mutation p.T1321A 0.06 benign(0) TCGA-ZG-A9LB-01 8 56436491 56436491 G A XKR4 Missense_Mutation p.R553H 0.04 tolerated(0.06) possibly_damaging(0.572) TCGA-ZG-A9LB-01 9 27036543 27036543 C T IFT74 Intron 0.13 TCGA-ZG-A9LB-01 X 101381877 101381877 G A TCEAL2 Silent p.P25P 0.10 TCGA-ZG-A9LB-01 X 70603930 70603930 G A TAF1 Missense_Mutation p.G709E 0.30 deleterious(0) benign(0.359) TCGA-ZG-A9LM-01 11 119213427 119213427 C T MFRP Silent p.G422G 0.26 TCGA-ZG-A9LM-01 11 209474 209474 T A RIC8A Missense_Mutation p.L67Q 0.39 deleterious(0) probably_damaging(1) TCGA-ZG-A9LM-01 11 27016184 27016184 C T FIBIN Silent p.F37F 0.30 TCGA-ZG-A9LM-01 12 56355130 56355130 A T PMEL Missense_Mutation p.V102D 0.43 deleterious(0) probably_damaging(0.972) TCGA-ZG-A9LM-01 14 67850087 67850087 T C EIF2S1 Missense_Mutation p.L293P 0.34 tolerated(0.05) possibly_damaging(0.856) TCGA-ZG-A9LM-01 14 74196649 74196649 C T ELMSAN1 Missense_Mutation p.V597M 0.22 tolerated(0.09) benign(0.013) TCGA-ZG-A9LM-01 14 90735788 90735788 T C PSMC1 Missense_Mutation p.L310S 0.27 deleterious(0) probably_damaging(0.988) TCGA-ZG-A9LM-01 15 22382875 22382875 G C OR4N4 Missense_Mutation p.V135L 0.58 tolerated(0.19) benign(0.008) TCGA-ZG-A9LM-01 16 31289353 31289353 C T ITGAM Nonsense_Mutation p.Q427* 0.29 TCGA-ZG-A9LM-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.53 deleterious(0) probably_damaging(0.998) TCGA-ZG-A9LM-01 19 15758123 15758123 A G CYP4F3 Missense_Mutation p.N172D 0.30 tolerated(0.36) benign(0.02) TCGA-ZG-A9LM-01 1 171753487 171753487 G A METTL13 Nonsense_Mutation p.W254* 0.38 TCGA-ZG-A9LM-01 1 207072830 207072830 G A IL24 Nonsense_Mutation p.W71* 0.24 TCGA-ZG-A9LM-01 1 214811277 214811277 G A CENPF Silent p.L505L 0.42 TCGA-ZG-A9LM-01 1 215956215 215956215 G A USH2A Nonsense_Mutation p.R3484* 0.08 TCGA-ZG-A9LM-01 1 226923861 226923861 G A ITPKB Silent p.G433G 0.47 TCGA-ZG-A9LM-01 1 229625797 229625797 G A NUP133 Missense_Mutation p.L367F 0.10 deleterious(0.02) probably_damaging(0.992) TCGA-ZG-A9LM-01 1 25245770 25245770 C A RUNX3 Missense_Mutation p.A183S 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-ZG-A9LM-01 1 26629355 26629355 G A UBXN11 Missense_Mutation p.S7F 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-ZG-A9LM-01 22 23047197 23047197 C T IGLV3-22 Nonsense_Mutation p.R79* 0.21 TCGA-ZG-A9LM-01 22 30762129 30762129 C G CCDC157 Missense_Mutation p.A47G 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-ZG-A9LM-01 22 45939325 45939328 AAGT - FBLN1 Frame_Shift_Del p.K414Afs*116 0.21 TCGA-ZG-A9LM-01 2 10350581 10350581 G A C2orf48 Missense_Mutation p.R113K 0.18 tolerated_low_confidence(0.53) benign(0) TCGA-ZG-A9LM-01 2 17998086 17998086 C T MSGN1 Nonsense_Mutation p.Q101* 0.18 TCGA-ZG-A9LM-01 2 241513550 241513550 C T RNPEPL1 Missense_Mutation p.P89L 0.07 deleterious(0.02) probably_damaging(1) TCGA-ZG-A9LM-01 2 84517949 84517949 G A FUNDC2P2 RNA 0.25 TCGA-ZG-A9LM-01 2 96993057 96993057 C T ITPRIPL1 Missense_Mutation p.H238Y 0.24 deleterious(0.05) possibly_damaging(0.536) TCGA-ZG-A9LM-01 3 10401651 10401651 G A ATP2B2 Missense_Mutation p.R606C 0.34 deleterious(0) probably_damaging(0.956) TCGA-ZG-A9LM-01 3 37366393 37366393 A G GOLGA4 Missense_Mutation p.M1028V 0.33 benign(0.055) TCGA-ZG-A9LM-01 4 37848860 37848860 C G PGM2 Missense_Mutation p.A409G 0.14 tolerated(0.13) possibly_damaging(0.464) TCGA-ZG-A9LM-01 4 56726617 56726617 C T EXOC1 Silent p.V55V 0.18 TCGA-ZG-A9LM-01 6 43323044 43323044 T C ZNF318 Silent p.L676L 0.32 TCGA-ZG-A9LM-01 6 56035877 56035877 T C COL21A1 Silent p.G230G 0.25 TCGA-ZG-A9LM-01 6 87725923 87725923 C T HTR1E Missense_Mutation p.R291C 0.34 deleterious(0) probably_damaging(0.978) TCGA-ZG-A9LM-01 7 116435978 116435978 G A MET Missense_Mutation p.E1343K 0.52 deleterious(0.04) probably_damaging(0.995) TCGA-ZG-A9LM-01 7 86808992 86808994 GTA - DMTF1 In_Frame_Del p.M217_Y218delinsI 0.10 TCGA-ZG-A9LM-01 8 110984685 110984685 G A KCNV1 Missense_Mutation p.R265W 0.06 deleterious(0.02) benign(0.013) TCGA-ZG-A9LM-01 8 99963827 99963827 A T OSR2 Silent p.T279T 0.14 TCGA-ZG-A9LM-01 9 43624789 43624789 G A SPATA31A6 Nonsense_Mutation p.R1300* 0.30 TCGA-ZG-A9LM-01 X 100104284 100104284 T C NOX1 Silent p.G476G 0.53 TCGA-ZG-A9LN-01 10 104140416 104140416 G T GBF1 Nonsense_Mutation p.E1715* 0.14 TCGA-ZG-A9LN-01 11 82698543 82698543 G C RAB30 Intron 0.19 TCGA-ZG-A9LN-01 12 113376377 113376377 C T OAS3 Silent p.F14F 0.15 TCGA-ZG-A9LN-01 12 31236844 31236844 C G DDX11 Missense_Mutation p.T81S 0.14 tolerated(0.27) benign(0.004) TCGA-ZG-A9LN-01 12 54912463 54912463 C T NCKAP1L Missense_Mutation p.S456F 0.16 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9LN-01 12 9086978 9086978 G T PHC1 Missense_Mutation p.M719I 0.21 tolerated(0.42) unknown(0) TCGA-ZG-A9LN-01 16 20824580 20824580 G T AC004381.6 Missense_Mutation p.L69F 0.05 tolerated(0.11) possibly_damaging(0.609) TCGA-ZG-A9LN-01 16 30518157 30518157 C T ITGAL Missense_Mutation p.R830C 0.20 deleterious(0) probably_damaging(0.992) TCGA-ZG-A9LN-01 19 30936514 30936514 C T ZNF536 Missense_Mutation p.S682L 0.14 tolerated(0.08) probably_damaging(0.99) TCGA-ZG-A9LN-01 19 3573797 3573797 A T HMG20B Missense_Mutation p.E49V 0.19 deleterious(0) probably_damaging(0.931) TCGA-ZG-A9LN-01 19 42383245 42383245 G T CD79A Missense_Mutation p.G89C 0.11 deleterious(0) probably_damaging(0.989) TCGA-ZG-A9LN-01 19 51361464 51361464 C T KLK3 Missense_Mutation p.P129L 0.16 deleterious(0) probably_damaging(0.986) TCGA-ZG-A9LN-01 19 52327505 52327505 T A FPR3 Missense_Mutation p.S168R 0.18 tolerated(0.61) benign(0.012) TCGA-ZG-A9LN-01 1 153635689 153635689 A T ILF2 Splice_Site p.X269_splice 0.14 TCGA-ZG-A9LN-01 1 198704261 198704261 G A PTPRC Silent p.K761K 0.12 TCGA-ZG-A9LN-01 1 64104431 64104431 G A PGM1 Silent p.A386A 0.09 TCGA-ZG-A9LN-01 20 3782946 3782946 T A CDC25B Missense_Mutation p.S373T 0.20 tolerated(0.12) possibly_damaging(0.842) TCGA-ZG-A9LN-01 22 24123200 24123200 T - MMP11 Frame_Shift_Del p.Y257* 0.20 TCGA-ZG-A9LN-01 22 41922499 41922499 G T POLR3H 3'UTR 0.32 TCGA-ZG-A9LN-01 2 173891986 173891986 C G RAPGEF4 Missense_Mutation p.H853D 0.18 deleterious(0.01) possibly_damaging(0.627) TCGA-ZG-A9LN-01 2 220087403 220087403 G C ATG9A Silent p.L604L 0.14 TCGA-ZG-A9LN-01 2 56104957 56104957 G A EFEMP1 Silent p.C228C 0.19 TCGA-ZG-A9LN-01 2 80530418 80530418 A - LRRTM1 Frame_Shift_Del p.V176Gfs*49 0.15 TCGA-ZG-A9LN-01 2 89986989 89986989 C T IGKV2D-29 Silent p.S90S 0.21 TCGA-ZG-A9LN-01 3 41877429 41877429 T C ULK4 Missense_Mutation p.N564S 0.13 deleterious(0.02) possibly_damaging(0.831) TCGA-ZG-A9LN-01 3 52741717 52741717 A G SPCS1 Silent p.P133P 0.16 TCGA-ZG-A9LN-01 4 57182747 57182747 C T KIAA1211 Nonsense_Mutation p.Q1027* 0.17 TCGA-ZG-A9LN-01 5 140763752 140763752 C T PCDHGA7 Missense_Mutation p.T429I 0.12 tolerated_low_confidence(0.15) benign(0.033) TCGA-ZG-A9LN-01 6 150322175 150322175 T C RAET1K RNA 0.13 TCGA-ZG-A9LN-01 6 32123649 32123649 C A PPT2 Missense_Mutation p.D151E 0.14 tolerated(0.06) benign(0.018) TCGA-ZG-A9LN-01 6 4032911 4032911 C G PRPF4B Missense_Mutation p.S387C 0.11 deleterious(0) probably_damaging(0.993) TCGA-ZG-A9LN-01 7 2566511 2566511 C G LFNG Silent p.A343A 0.15 TCGA-ZG-A9LN-01 7 44250637 44250637 T A YKT6 Missense_Mutation p.S159T 0.16 deleterious(0.03) benign(0.367) TCGA-ZG-A9LN-01 8 114449051 114449051 T A CSMD3 Silent p.A11A 0.14 TCGA-ZG-A9LN-01 8 87951839 87951839 C T CNBD1 Silent p.G96G 0.15 TCGA-ZG-A9LN-01 9 130587986 130587986 C T ENG Missense_Mutation p.G226D 0.17 tolerated(0.05) possibly_damaging(0.796) TCGA-ZG-A9LN-01 9 137593107 137593107 C T COL5A1 Silent p.S194S 0.19 TCGA-ZG-A9LN-01 9 79322279 79322279 T C PRUNE2 Silent p.L1637L 0.06 TCGA-ZG-A9LN-01 9 86617189 86617189 A G RMI1 Missense_Mutation p.T430A 0.15 tolerated(0.39) benign(0.002) TCGA-ZG-A9LN-01 X 47271771 47271771 C T ZNF157 Missense_Mutation p.S100F 0.35 tolerated(0.05) benign(0.08) TCGA-ZG-A9LN-01 X 47271775 47271775 C G ZNF157 Silent p.L101L 0.34 TCGA-ZG-A9LN-01 X 47272239 47272239 C G ZNF157 Missense_Mutation p.S256C 0.23 tolerated(0.07) probably_damaging(0.975) TCGA-ZG-A9LN-01 X 47272265 47272265 C T ZNF157 Nonsense_Mutation p.Q265* 0.23 TCGA-ZG-A9LN-01 X 47272505 47272505 C G ZNF157 Missense_Mutation p.L345V 0.21 deleterious(0) possibly_damaging(0.892) TCGA-ZG-A9LN-01 X 47272569 47272569 C A ZNF157 Missense_Mutation p.S366Y 0.36 deleterious(0) benign(0.216) TCGA-ZG-A9LN-01 X 47272589 47272589 C G ZNF157 Missense_Mutation p.L373V 0.29 deleterious(0) probably_damaging(0.998) TCGA-ZG-A9LN-01 X 47272698 47272698 C T ZNF157 Missense_Mutation p.S409L 0.26 deleterious(0.01) possibly_damaging(0.831) TCGA-ZG-A9LS-01 12 56090747 56090747 G A ITGA7 Missense_Mutation p.S562L 0.28 deleterious(0.01) probably_damaging(0.959) TCGA-ZG-A9LS-01 15 70347600 70347600 G T TLE3 Missense_Mutation p.Q459K 0.25 deleterious(0) possibly_damaging(0.844) TCGA-ZG-A9LS-01 16 2150415 2150415 C G PKD1 Missense_Mutation p.V3184L 0.20 benign(0.38) TCGA-ZG-A9LS-01 16 69177241 69177241 G A CIRH1A Silent p.V229V 0.19 TCGA-ZG-A9LS-01 16 89348421 89348421 G A ANKRD11 Missense_Mutation p.P1510L 0.17 benign(0.234) TCGA-ZG-A9LS-01 17 18880288 18880288 G A FAM83G Intron 0.20 TCGA-ZG-A9LS-01 17 66871845 66871845 G A ABCA8 Missense_Mutation p.T1427M 0.26 deleterious(0.04) benign(0.302) TCGA-ZG-A9LS-01 17 79667788 79667788 A G HGS Missense_Mutation p.M694V 0.22 tolerated(0.69) benign(0.001) TCGA-ZG-A9LS-01 19 35832259 35832259 C T CD22 Silent p.D507D 0.21 TCGA-ZG-A9LS-01 1 12954463 12954463 T G PRAMEF10 Missense_Mutation p.I274L 0.28 tolerated(1) benign(0.004) TCGA-ZG-A9LS-01 1 85491926 85491934 CAAAGGCAT - MCOLN3 In_Frame_Del p.D289_F291del 0.13 TCGA-ZG-A9LS-01 20 55904876 55904876 G A SPO11 5'UTR 0.38 TCGA-ZG-A9LS-01 2 216177103 216177103 G A ATIC Intron 0.25 TCGA-ZG-A9LS-01 3 126208213 126208213 C T UROC1 Silent p.P598P 0.21 TCGA-ZG-A9LS-01 3 51897199 51897199 T C IQCF2 Missense_Mutation p.V103A 0.24 tolerated(0.79) possibly_damaging(0.906) TCGA-ZG-A9LS-01 4 155528019 155528019 C T FGG Missense_Mutation p.D323N 0.16 tolerated(0.08) probably_damaging(0.95) TCGA-ZG-A9LS-01 4 41750634 41750634 G A PHOX2B 5'UTR 0.11 TCGA-ZG-A9LS-01 5 140769422 140769422 G A PCDHGB4 Silent p.T657T 0.22 TCGA-ZG-A9LS-01 5 169454921 169454921 G T DOCK2 Missense_Mutation p.D1146Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9LS-01 6 43096847 43096847 C G PTK7 Missense_Mutation p.P79R 0.15 tolerated(0.37) benign(0.364) TCGA-ZG-A9LS-01 6 56480467 56480467 C T DST Intron 0.18 TCGA-ZG-A9LS-01 7 117364661 117364661 G A CTTNBP2 Missense_Mutation p.R1463C 0.16 deleterious(0) probably_damaging(0.953) TCGA-ZG-A9LS-01 7 120614943 120614943 T A ING3 3'UTR 0.17 TCGA-ZG-A9LS-01 7 44839402 44839402 C - PPIA Frame_Shift_Del p.L98Cfs*35 0.21 TCGA-ZG-A9LS-01 7 93055795 93055795 G A CALCR Missense_Mutation p.A467V 0.22 tolerated(0.43) benign(0.041) TCGA-ZG-A9LS-01 9 111746717 111746717 C G CTNNAL1 Splice_Site p.X214_splice 0.17 TCGA-ZG-A9LS-01 9 139748448 139748448 C T MAMDC4 Missense_Mutation p.T197I 0.12 tolerated(0.33) benign(0.067) TCGA-ZG-A9LS-01 9 139748449 139748449 C T MAMDC4 Silent p.T197T 0.12 TCGA-ZG-A9LU-01 11 124310141 124310141 C T OR8B8 Missense_Mutation p.V281M 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.615) TCGA-ZG-A9LU-01 11 30902775 30902775 C A DCDC1 Missense_Mutation p.Q1718H 0.07 tolerated(0.43) benign(0) TCGA-ZG-A9LU-01 11 84245658 84245658 T C DLG2 Silent p.E158E 0.04 TCGA-ZG-A9LU-01 15 41192034 41192034 G A VPS18 Missense_Mutation p.A340T 0.06 tolerated(0.65) benign(0.038) TCGA-ZG-A9LU-01 15 64967480 64967480 C T ZNF609 Silent p.G809G 0.05 TCGA-ZG-A9LU-01 16 19547945 19547945 T G CCP110 Silent p.A318A 0.06 TCGA-ZG-A9LU-01 16 30093814 30093814 G A PPP4C Missense_Mutation p.D54N 0.09 deleterious(0.01) benign(0.346) TCGA-ZG-A9LU-01 19 52569155 52569155 T C ZNF841 Silent p.K660K 0.13 TCGA-ZG-A9LU-01 19 9057373 9057373 A G MUC16 Silent p.L10025L 0.22 TCGA-ZG-A9LU-01 19 9057380 9057380 A T MUC16 Silent p.S10022S 0.23 TCGA-ZG-A9LU-01 1 167088583 167088583 T C DUSP27 Missense_Mutation p.Y179H 0.12 deleterious(0) probably_damaging(1) TCGA-ZG-A9LU-01 1 235295210 235295210 G T RBM34 Missense_Mutation p.Q371K 0.11 tolerated(0.78) benign(0.005) TCGA-ZG-A9LU-01 1 55572934 55572934 A C USP24 Missense_Mutation p.C1580W 0.09 deleterious(0.02) probably_damaging(0.914) TCGA-ZG-A9LU-01 20 1460495 1460495 G A SIRPB2 Missense_Mutation p.R101W 0.12 deleterious(0.04) benign(0.017) TCGA-ZG-A9LU-01 20 37153536 37153536 G A RALGAPB Missense_Mutation p.D579N 0.15 tolerated(1) benign(0.006) TCGA-ZG-A9LU-01 20 43945625 43945625 A G RBPJL 3'UTR 0.08 TCGA-ZG-A9LU-01 21 19715874 19715874 T C TMPRSS15 Silent p.G459G 0.07 TCGA-ZG-A9LU-01 21 42748856 42748856 G A MX2 Nonsense_Mutation p.W8* 0.07 TCGA-ZG-A9LU-01 3 14508027 14508027 G A SLC6A6 Missense_Mutation p.V246I 0.13 deleterious(0) possibly_damaging(0.821) TCGA-ZG-A9LU-01 5 180666064 180666064 T C GNB2L1 Intron 0.10 TCGA-ZG-A9LU-01 5 89990012 89990012 G A GPR98 Nonsense_Mutation p.W2480* 0.09 TCGA-ZG-A9LU-01 5 95728927 95728927 C T PCSK1 Silent p.P680P 0.07 TCGA-ZG-A9LU-01 7 2953048 2953048 G A CARD11 Silent p.S964S 0.10 TCGA-ZG-A9LU-01 7 54617693 54617693 G A VSTM2A Missense_Mutation p.R155H 0.25 deleterious(0.04) probably_damaging(0.939) TCGA-ZG-A9LU-01 9 113231326 113231326 G A SVEP1 Silent p.C1018C 0.06 TCGA-ZG-A9LU-01 9 138641963 138641963 G A KCNT1 Missense_Mutation p.V92I 0.08 deleterious(0.05) benign(0.245) TCGA-ZG-A9LU-01 9 97365824 97365824 C G FBP1 Missense_Mutation p.A286P 0.09 deleterious(0) probably_damaging(0.995) TCGA-ZG-A9LU-01 X 111003140 111003140 T C ALG13 Silent p.S1109S 0.17 TCGA-ZG-A9LU-01 X 17750109 17750115 CCAACAG - NHS Frame_Shift_Del p.N1474Rfs*44 0.16 TCGA-ZG-A9LU-01 X 40988337 40988337 G T USP9X Nonsense_Mutation p.E61* 0.19 TCGA-ZG-A9LU-01 X 6451759 6451759 C G VCX3A 3'UTR 0.21 TCGA-ZG-A9LY-01 10 118306869 118306869 C T PNLIP Missense_Mutation p.T37M 0.21 tolerated(0.17) benign(0.091) TCGA-ZG-A9LY-01 11 93800893 93800893 G T HEPHL1 Missense_Mutation p.C347F 0.24 deleterious(0) probably_damaging(1) TCGA-ZG-A9LY-01 12 110353201 110353209 CACTCAGGT - TCHP Splice_Site p.X441_splice 0.14 TCGA-ZG-A9LY-01 12 112600120 112600120 C T HECTD4 3'UTR 0.20 TCGA-ZG-A9LY-01 12 123345916 123345916 G A HIP1R Missense_Mutation p.R1005Q 0.11 deleterious(0) probably_damaging(1) TCGA-ZG-A9LY-01 12 45209834 45209834 C A NELL2 Missense_Mutation p.L140F 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-ZG-A9LY-01 12 53202551 53202551 G A KRT4 Silent p.S306S 0.25 TCGA-ZG-A9LY-01 12 53202552 53202552 C A KRT4 Missense_Mutation p.S306I 0.25 deleterious(0) probably_damaging(0.961) TCGA-ZG-A9LY-01 12 95452139 95452139 C T NR2C1 Missense_Mutation p.R164H 0.07 deleterious(0) probably_damaging(0.992) TCGA-ZG-A9LY-01 13 108862028 108862028 T C LIG4 Missense_Mutation p.H530R 0.23 tolerated(0.47) benign(0.001) TCGA-ZG-A9LY-01 15 64673622 64673622 G C KIAA0101 5'UTR 0.23 TCGA-ZG-A9LY-01 17 19247157 19247157 G A B9D1 Missense_Mutation p.R140W 0.16 deleterious(0) probably_damaging(0.952) TCGA-ZG-A9LY-01 19 13414687 13414687 G A CACNA1A Silent p.G666G 0.17 TCGA-ZG-A9LY-01 19 42821926 42821926 G A TMEM145 Silent p.L322L 0.06 TCGA-ZG-A9LY-01 19 55450938 55450938 G A NLRP7 Missense_Mutation p.L417F 0.19 tolerated(0.07) benign(0.027) TCGA-ZG-A9LY-01 1 115142031 115142031 T C DENND2C Missense_Mutation p.Y716C 0.19 deleterious(0) probably_damaging(1) TCGA-ZG-A9LY-01 1 12058885 12058885 G T MFN2 Missense_Mutation p.A220S 0.11 deleterious(0) benign(0.243) TCGA-ZG-A9LY-01 1 193038185 193038185 A T TROVE2 Translation_Start_Site p.M1? 0.18 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-ZG-A9LY-01 1 35370518 35370518 G A DLGAP3 Missense_Mutation p.T156M 0.16 tolerated(0.12) benign(0.046) TCGA-ZG-A9LY-01 20 30732918 30732918 C T TM9SF4 Missense_Mutation p.S226L 0.19 tolerated(0.22) benign(0.001) TCGA-ZG-A9LY-01 20 60992329 60992329 G A RBBP8NL Missense_Mutation p.R51W 0.27 deleterious(0) probably_damaging(0.994) TCGA-ZG-A9LY-01 2 216243939 216243939 G A FN1 Missense_Mutation p.R1846W 0.12 deleterious(0.04) probably_damaging(0.954) TCGA-ZG-A9LY-01 2 233759485 233759485 C T NGEF Missense_Mutation p.V324M 0.20 deleterious(0) probably_damaging(0.993) TCGA-ZG-A9LY-01 2 26492860 26492860 G A HADHB Silent p.A83A 0.14 TCGA-ZG-A9LY-01 2 29917842 29917842 A C ALK Missense_Mutation p.Y276D 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-ZG-A9LY-01 2 89544412 89544412 C T IGKV2-30 Missense_Mutation p.R71H 0.23 tolerated(0.09) benign(0.005) TCGA-ZG-A9LY-01 3 121383372 121383372 T C GOLGB1 Silent p.L3255L 0.23 TCGA-ZG-A9LY-01 3 150931217 150931217 G T P2RY14 Missense_Mutation p.F296L 0.18 tolerated(0.26) benign(0.183) TCGA-ZG-A9LY-01 3 30029706 30029706 T C RBMS3 Missense_Mutation p.S391P 0.20 tolerated(0.46) benign(0) TCGA-ZG-A9LY-01 3 49412958 49412958 A C RHOA Missense_Mutation p.L22R 0.18 deleterious(0.01) probably_damaging(0.919) TCGA-ZG-A9LY-01 3 49725284 49725284 C T MST1 Silent p.E47E 0.23 TCGA-ZG-A9LY-01 3 9782470 9782470 A - BRPF1 Frame_Shift_Del p.I524Sfs*5 0.20 TCGA-ZG-A9LY-01 4 126336650 126336650 G A FAT4 Missense_Mutation p.A2178T 0.13 probably_damaging(0.957) TCGA-ZG-A9LY-01 5 140228379 140228379 C T PCDHA9 Missense_Mutation p.A100V 0.14 tolerated_low_confidence(0.15) benign(0.074) TCGA-ZG-A9LY-01 5 140308818 140308818 C T PCDHAC1 Nonsense_Mutation p.R781* 0.19 TCGA-ZG-A9LY-01 5 147204154 147204154 G C SPINK1 3'UTR 0.19 TCGA-ZG-A9LY-01 6 153043116 153043116 C T MYCT1 Nonsense_Mutation p.R146* 0.14 TCGA-ZG-A9LY-01 6 163987093 163987093 C T QKI Intron 0.17 TCGA-ZG-A9LY-01 6 26205164 26205164 C T HIST1H4E Missense_Mutation p.L98F 0.29 deleterious(0.01) possibly_damaging(0.554) TCGA-ZG-A9LY-01 7 75066917 75066917 T C POM121C Missense_Mutation p.H119R 0.25 tolerated(0.33) benign(0.244) TCGA-ZG-A9LY-01 9 134034812 134034812 G A NUP214 Missense_Mutation p.D827N 0.26 probably_damaging(0.95) TCGA-ZG-A9LY-01 X 115576109 115576109 G A SLC6A14 Missense_Mutation p.S227N 0.32 tolerated(0.24) benign(0.03) TCGA-ZG-A9LY-01 X 46913789 46913789 G A JADE3 Missense_Mutation p.R401Q 0.29 tolerated(1) benign(0.012) TCGA-ZG-A9LY-01 X 9900641 9900641 G T SHROOM2 Silent p.V1106V 0.37 TCGA-ZG-A9LZ-01 10 50227748 50227748 C T VSTM4 Missense_Mutation p.A304T 0.48 tolerated(0.58) benign(0.001) TCGA-ZG-A9LZ-01 12 50869343 50869343 A C LARP4 Missense_Mutation p.Q624P 0.05 deleterious(0) probably_damaging(0.996) TCGA-ZG-A9LZ-01 14 32560136 32560136 A G ARHGAP5 Silent p.E87E 0.05 TCGA-ZG-A9LZ-01 14 79434626 79434626 C T NRXN3 Missense_Mutation p.R654C 0.33 deleterious(0) probably_damaging(0.979) TCGA-ZG-A9LZ-01 14 94732161 94732161 G A PPP4R4 Missense_Mutation p.R772Q 0.37 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-ZG-A9LZ-01 15 31355425 31355425 C A TRPM1 Missense_Mutation p.L304F 0.08 deleterious(0.01) probably_damaging(0.986) TCGA-ZG-A9LZ-01 15 83677356 83677356 A G C15orf40 Missense_Mutation p.C104R 0.09 deleterious(0) probably_damaging(0.965) TCGA-ZG-A9LZ-01 16 89999982 89999982 C T TUBB3 Silent p.I91I 0.65 TCGA-ZG-A9LZ-01 17 55183580 55183580 A C AKAP1 Missense_Mutation p.Q252P 0.35 tolerated(0.28) benign(0.231) TCGA-ZG-A9LZ-01 17 7096281 7096281 G A DLG4 Nonsense_Mutation p.R660* 0.53 TCGA-ZG-A9LZ-01 17 8132109 8132109 A C CTC1 Missense_Mutation p.L1108R 0.27 deleterious(0.03) probably_damaging(0.979) TCGA-ZG-A9LZ-01 19 41135318 41135318 G T LTBP4 Nonsense_Mutation p.E1579* 0.23 TCGA-ZG-A9LZ-01 19 42584019 42584019 C T ZNF574 Missense_Mutation p.P421S 0.37 deleterious(0.04) possibly_damaging(0.857) TCGA-ZG-A9LZ-01 19 54849922 54849922 C T LILRA4 Missense_Mutation p.E34K 0.29 deleterious(0.03) possibly_damaging(0.794) TCGA-ZG-A9LZ-01 1 158608028 158608028 C A SPTA1 Missense_Mutation p.A1662S 0.31 tolerated(0.08) benign(0.446) TCGA-ZG-A9LZ-01 1 181702679 181702679 G A CACNA1E Missense_Mutation p.V1019M 0.43 tolerated(0.13) benign(0) TCGA-ZG-A9LZ-01 1 55337177 55337177 C T DHCR24 Missense_Mutation p.R241H 0.69 tolerated(0.36) benign(0.001) TCGA-ZG-A9LZ-01 1 86900300 86900300 T G CLCA2 Missense_Mutation p.S282A 0.08 deleterious(0) probably_damaging(0.996) TCGA-ZG-A9LZ-01 20 3673674 3673674 G A SIGLEC1 Missense_Mutation p.L1205F 0.55 deleterious(0.01) probably_damaging(0.99) TCGA-ZG-A9LZ-01 22 20073416 20073416 G T DGCR8 5'UTR 0.05 TCGA-ZG-A9LZ-01 2 149221402 149221402 G A MBD5 Missense_Mutation p.R104K 0.43 deleterious(0.01) benign(0.14) TCGA-ZG-A9LZ-01 2 176987556 176987556 C A HOXD9 Nonsense_Mutation p.Y20* 0.25 TCGA-ZG-A9LZ-01 2 189458664 189458664 C T GULP1 Intron 0.40 TCGA-ZG-A9LZ-01 2 216189998 216189998 A G ATIC Missense_Mutation p.T109A 0.38 tolerated(0.11) benign(0.12) TCGA-ZG-A9LZ-01 4 74606394 74606394 G T IL8 Missense_Mutation p.V7L 0.06 tolerated(0.37) benign(0.007) TCGA-ZG-A9LZ-01 5 158223441 158223441 G A EBF1 Missense_Mutation p.T274M 0.29 deleterious(0.02) probably_damaging(0.925) TCGA-ZG-A9LZ-01 5 78351638 78351638 C A DMGDH Missense_Mutation p.G124C 0.21 deleterious(0) probably_damaging(1) TCGA-ZG-A9LZ-01 6 126080681 126080681 C T HEY2 Silent p.C249C 0.18 TCGA-ZG-A9LZ-01 6 152652494 152652494 G A SYNE1 Silent p.G4442G 0.36 TCGA-ZG-A9LZ-01 6 159653362 159653362 G A FNDC1 Silent p.T606T 0.48 TCGA-ZG-A9LZ-01 6 6197460 6197460 G A F13A1 Silent p.S404S 0.09 TCGA-ZG-A9LZ-01 6 97058500 97058500 G T FHL5 Missense_Mutation p.C186F 0.39 deleterious(0) probably_damaging(1) TCGA-ZG-A9LZ-01 7 48321025 48321025 G A ABCA13 Missense_Mutation p.V2938I 0.29 benign(0.001) TCGA-ZG-A9LZ-01 8 28218558 28218558 G A ZNF395 Silent p.P28P 0.08 TCGA-ZG-A9LZ-01 8 30655146 30655146 A C PPP2CB Missense_Mutation p.F146C 0.10 tolerated(0.39) possibly_damaging(0.541) TCGA-ZG-A9LZ-01 8 3205573 3205573 C T CSMD1 Missense_Mutation p.G1139S 0.48 probably_damaging(1) TCGA-ZG-A9LZ-01 9 14801770 14801770 G A FREM1 Missense_Mutation p.R1192C 0.44 tolerated(0.05) possibly_damaging(0.586) TCGA-ZG-A9LZ-01 X 49958074 49958074 C A AKAP4 Missense_Mutation p.L430F 0.85 deleterious(0) probably_damaging(1) TCGA-ZG-A9M4-01 13 114288328 114288328 C T TFDP1 Nonsense_Mutation p.Q200* 0.41 TCGA-ZG-A9M4-01 14 51224910 51224910 C T NIN Silent p.R946R 0.40 TCGA-ZG-A9M4-01 14 93125791 93125791 A T RIN3 Missense_Mutation p.D771V 0.15 deleterious(0) probably_damaging(0.998) TCGA-ZG-A9M4-01 15 23932059 23932059 C T NDN Silent p.A102A 0.16 TCGA-ZG-A9M4-01 16 19278199 19278199 T G SYT17 Intron 0.37 TCGA-ZG-A9M4-01 16 1996981 1996981 G A RPL3L Silent p.A269A 0.25 TCGA-ZG-A9M4-01 16 4960866 4960867 CT - PPL Frame_Shift_Del p.E49Gfs*6 0.15 TCGA-ZG-A9M4-01 16 5135731 5135731 G A FAM86A Missense_Mutation p.R299W 0.10 tolerated(0.09) benign(0) TCGA-ZG-A9M4-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.25 TCGA-ZG-A9M4-01 17 7578495 7578501 CAGCTGC - TP53 Frame_Shift_Del p.Q144Gfs*24 0.22 TCGA-ZG-A9M4-01 18 9524699 9524699 G A RALBP1 Silent p.T387T 0.13 TCGA-ZG-A9M4-01 19 14710850 14710850 C T CLEC17A Silent p.R250R 0.39 TCGA-ZG-A9M4-01 19 18391896 18391896 C A JUND Missense_Mutation p.E133D 0.25 deleterious(0.04) possibly_damaging(0.482) TCGA-ZG-A9M4-01 19 22783087 22783087 A T AC011467.1 5'Flank 0.28 TCGA-ZG-A9M4-01 1 215408192 215408192 G A KCNK2 Missense_Mutation p.A329T 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-ZG-A9M4-01 20 31671327 31671327 C A BPIFB4 Silent p.I108I 0.29 TCGA-ZG-A9M4-01 20 42815085 42815085 T C JPH2 Silent p.T87T 0.28 TCGA-ZG-A9M4-01 21 30359240 30359240 G C LTN1 Missense_Mutation p.R66G 0.48 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9M4-01 22 19502368 19502368 C T CDC45 Silent p.L470L 0.22 TCGA-ZG-A9M4-01 2 167328878 167328878 G A SCN7A Missense_Mutation p.S174F 0.62 deleterious(0) benign(0.399) TCGA-ZG-A9M4-01 2 228109075 228109084 GTAAGGGTTA - COL4A3 Splice_Site p.X93_splice 0.13 TCGA-ZG-A9M4-01 2 55523004 55523004 T G CCDC88A Missense_Mutation p.K1759N 0.28 tolerated(0.08) possibly_damaging(0.506) TCGA-ZG-A9M4-01 2 62099679 62099681 AAC - CCT4 In_Frame_Del p.V390del 0.08 TCGA-ZG-A9M4-01 2 71206323 71206323 C G ANKRD53 Missense_Mutation p.D89E 0.30 tolerated(0.83) benign(0.001) TCGA-ZG-A9M4-01 2 7137191 7137191 T G RNF144A Missense_Mutation p.L45R 0.22 tolerated(0.5) benign(0.042) TCGA-ZG-A9M4-01 2 74329100 74329100 C T TET3 Missense_Mutation p.R1594W 0.47 deleterious(0) probably_damaging(0.969) TCGA-ZG-A9M4-01 3 47454084 47454084 C G PTPN23 Missense_Mutation p.C1466W 0.23 probably_damaging(0.954) TCGA-ZG-A9M4-01 4 84519225 84519225 G T AGPAT9 Missense_Mutation p.A340S 0.19 deleterious(0.01) benign(0.318) TCGA-ZG-A9M4-01 5 50074463 50074463 A G PARP8 Missense_Mutation p.T217A 0.37 deleterious(0.01) benign(0.254) TCGA-ZG-A9M4-01 6 138601154 138601154 G A KIAA1244 Missense_Mutation p.V772M 0.09 deleterious(0) benign(0.252) TCGA-ZG-A9M4-01 6 157454311 157454311 G A ARID1B Missense_Mutation p.G841S 0.47 probably_damaging(1) TCGA-ZG-A9M4-01 6 29141930 29141930 G A OR2J2 Missense_Mutation p.R173H 0.22 tolerated(0.63) benign(0.005) TCGA-ZG-A9M4-01 6 33423655 33423655 C T ZBTB9 Nonsense_Mutation p.R260* 0.16 TCGA-ZG-A9M4-01 6 90494821 90494821 C G MDN1 Missense_Mutation p.W453C 0.27 probably_damaging(0.989) TCGA-ZG-A9M4-01 7 128494226 128494226 G A FLNC Missense_Mutation p.R2228Q 0.27 tolerated(0.26) benign(0.001) TCGA-ZG-A9M4-01 8 145579637 145579637 C A FBXL6 Missense_Mutation p.S488I 0.33 deleterious(0.02) possibly_damaging(0.451) TCGA-ZG-A9M4-01 8 20110316 20110316 C T LZTS1 Missense_Mutation p.A376T 0.22 tolerated(0.93) benign(0.003) TCGA-ZG-A9M4-01 8 79598725 79598725 T C ZC2HC1A Silent p.S78S 0.36 TCGA-ZG-A9M4-01 9 138454224 138454224 A C PAEP Missense_Mutation p.I61L 0.28 deleterious(0.01) benign(0.27) TCGA-ZG-A9M4-01 9 139658947 139658947 C A LCN15 5'UTR 0.25 TCGA-ZG-A9M4-01 9 449902 449902 G A DOCK8 Missense_Mutation p.G1979D 0.59 deleterious(0) probably_damaging(1) TCGA-ZG-A9M4-01 X 129318354 129318354 C T RAB33A Silent p.D118D 0.12 TCGA-ZG-A9M4-01 X 44949994 44949994 C T KDM6A Missense_Mutation p.R1255W 0.07 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9MC-01 11 124135507 124135507 G A OR8G5 Missense_Mutation p.R262H 0.09 tolerated(0.44) benign(0.008) TCGA-ZG-A9MC-01 11 18765711 18765711 C T PTPN5 Missense_Mutation p.E45K 0.11 tolerated_low_confidence(0.27) benign(0.002) TCGA-ZG-A9MC-01 11 72946198 72946198 G A P2RY2 Missense_Mutation p.A332T 0.07 tolerated(0.12) benign(0.003) TCGA-ZG-A9MC-01 11 7324413 7324413 G T SYT9 Nonsense_Mutation p.E97* 0.07 TCGA-ZG-A9MC-01 13 102029346 102029346 C T NALCN Missense_Mutation p.R146Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9MC-01 14 24884335 24884335 A C NYNRIN Missense_Mutation p.D1127A 0.14 deleterious(0.04) benign(0.04) TCGA-ZG-A9MC-01 16 31090194 31090194 G A ZNF646 Missense_Mutation p.C850Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-ZG-A9MC-01 16 836244 836244 G A RPUSD1 Silent p.I215I 0.14 TCGA-ZG-A9MC-01 17 36936728 36936728 T C PIP4K2B Missense_Mutation p.N162D 0.08 tolerated(0.06) benign(0.219) TCGA-ZG-A9MC-01 17 4635145 4635145 G A MED11 Missense_Mutation p.A54T 0.16 tolerated(0.28) benign(0.005) TCGA-ZG-A9MC-01 18 77170874 77170874 C A NFATC1 Missense_Mutation p.P187H 0.08 deleterious(0) probably_damaging(0.996) TCGA-ZG-A9MC-01 19 12826131 12826131 C T TNPO2 Missense_Mutation p.A192T 0.09 deleterious(0) possibly_damaging(0.789) TCGA-ZG-A9MC-01 19 38976472 38976472 G A RYR1 Missense_Mutation p.R1726H 0.08 probably_damaging(0.955) TCGA-ZG-A9MC-01 1 11562088 11562088 G A PTCHD2 Missense_Mutation p.E347K 0.16 tolerated(0.17) benign(0.041) TCGA-ZG-A9MC-01 1 115828942 115828942 C A NGF Missense_Mutation p.V159L 0.07 deleterious(0.01) probably_damaging(0.989) TCGA-ZG-A9MC-01 1 175996718 175996718 G A RFWD2 Silent p.F573F 0.11 TCGA-ZG-A9MC-01 1 234452357 234452357 G A SLC35F3 Missense_Mutation p.A280T 0.04 tolerated(0.06) probably_damaging(0.999) TCGA-ZG-A9MC-01 1 25889581 25889581 G A LDLRAP1 Missense_Mutation p.A185T 0.09 tolerated(0.46) benign(0.003) TCGA-ZG-A9MC-01 1 66067276 66067276 C T LEPR Missense_Mutation p.T399I 0.06 deleterious(0.01) probably_damaging(0.993) TCGA-ZG-A9MC-01 20 44588048 44588048 T G ZNF335 Missense_Mutation p.Y682S 0.10 tolerated(0.17) benign(0.32) TCGA-ZG-A9MC-01 2 27669200 27669200 G C IFT172 Missense_Mutation p.S1561C 0.10 tolerated(0.06) possibly_damaging(0.665) TCGA-ZG-A9MC-01 4 164534519 164534519 A G MARCH1 Silent p.A63A 0.09 TCGA-ZG-A9MC-01 5 126171994 126171994 T C LMNB1 3'UTR 0.06 TCGA-ZG-A9MC-01 5 140346986 140346986 G A PCDHAC2 Missense_Mutation p.R212H 0.16 deleterious(0.01) possibly_damaging(0.871) TCGA-ZG-A9MC-01 5 140553130 140553130 C T PCDHB7 Silent p.N238N 0.10 TCGA-ZG-A9MC-01 5 170236677 170236677 G A GABRP Missense_Mutation p.C313Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9MC-01 6 29408019 29408019 C T OR10C1 Missense_Mutation p.T76M 0.12 tolerated(0.05) benign(0.01) TCGA-ZG-A9MC-01 6 29408070 29408070 G A OR10C1 Missense_Mutation p.R93H 0.09 deleterious(0.03) possibly_damaging(0.7) TCGA-ZG-A9MC-01 8 119122902 119122902 G C EXT1 Silent p.A128A 0.06 TCGA-ZG-A9MC-01 8 139163880 139163880 G C FAM135B Missense_Mutation p.I946M 0.09 tolerated(0.23) benign(0.023) TCGA-ZG-A9MC-01 9 139090879 139090879 G A LHX3 Missense_Mutation p.R166C 0.16 deleterious(0) probably_damaging(0.997) TCGA-ZG-A9MC-01 X 153049636 153049636 A - SRPK3 Frame_Shift_Del p.Q372Rfs*21 0.20 TCGA-ZG-A9MC-01 X 3228257 3228257 C T MXRA5 Missense_Mutation p.G2663R 0.15 tolerated(0.19) benign(0.117) TCGA-ZG-A9MC-01 X 52825634 52825634 G A SPANXN5 Missense_Mutation p.P38L 0.18 tolerated(0.16) benign(0.431) TCGA-ZG-A9N3-01 10 26825137 26825137 A G APBB1IP Silent p.G345G 0.17 TCGA-ZG-A9N3-01 10 68940103 68940103 T A CTNNA3 Missense_Mutation p.Q340L 0.10 deleterious(0) benign(0.227) TCGA-ZG-A9N3-01 11 108143285 108143293 TATTCTCTG - ATM In_Frame_Del p.F1036_V1038del 0.38 TCGA-ZG-A9N3-01 11 118919563 118919563 G A HYOU1 Silent p.G676G 0.30 TCGA-ZG-A9N3-01 11 122929402 122929402 T C HSPA8 Missense_Mutation p.N487S 0.12 deleterious_low_confidence(0.04) benign(0.07) TCGA-ZG-A9N3-01 11 1271887 1271887 G A MUC5B Missense_Mutation p.V4593M 0.12 unknown(0) TCGA-ZG-A9N3-01 11 32956318 32956318 C T QSER1 Missense_Mutation p.L1043F 0.08 tolerated_low_confidence(0.17) benign(0.299) TCGA-ZG-A9N3-01 11 55659088 55659088 T A TRIM51 Missense_Mutation p.F447I 0.17 tolerated(0.3) possibly_damaging(0.58) TCGA-ZG-A9N3-01 11 6007621 6007621 C A OR52L1 Missense_Mutation p.L180F 0.15 deleterious(0) probably_damaging(1) TCGA-ZG-A9N3-01 11 62288998 62288998 T A AHNAK Missense_Mutation p.K4297N 0.34 possibly_damaging(0.856) TCGA-ZG-A9N3-01 11 77815429 77815429 G C ALG8 Missense_Mutation p.L417V 0.30 deleterious(0) possibly_damaging(0.69) TCGA-ZG-A9N3-01 11 92086088 92086088 T C FAT3 Silent p.T270T 0.14 TCGA-ZG-A9N3-01 12 112622677 112622677 G A HECTD4 Missense_Mutation p.R3219C 0.05 probably_damaging(0.998) TCGA-ZG-A9N3-01 12 50472233 50472233 C A ASIC1 Silent p.T289T 0.18 TCGA-ZG-A9N3-01 12 82780736 82780736 C - METTL25 Frame_Shift_Del p.Q139Rfs*13 0.11 TCGA-ZG-A9N3-01 15 101552216 101552218 TGT - LRRK1 In_Frame_Del p.C430del 0.21 TCGA-ZG-A9N3-01 15 22855263 22855263 C A TUBGCP5 Missense_Mutation p.A575E 0.21 tolerated(0.43) benign(0.169) TCGA-ZG-A9N3-01 15 69080172 69080172 T C ANP32A Silent p.L47L 0.36 TCGA-ZG-A9N3-01 16 20976630 20976630 A G DNAH3 Missense_Mutation p.I2859T 0.29 deleterious(0) probably_damaging(0.997) TCGA-ZG-A9N3-01 16 67865131 67865131 G A CENPT Silent p.L231L 0.14 TCGA-ZG-A9N3-01 16 9858512 9858512 G A GRIN2A Silent p.L963L 0.20 TCGA-ZG-A9N3-01 17 38249344 38249344 C T NR1D1 Missense_Mutation p.A613T 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.457) TCGA-ZG-A9N3-01 17 39579113 39579113 C T KRT37 Missense_Mutation p.A217T 0.50 deleterious(0) benign(0.015) TCGA-ZG-A9N3-01 17 45993545 45993545 C G SP2 Silent p.A36A 0.21 TCGA-ZG-A9N3-01 17 68128240 68128240 C T KCNJ16 Silent p.Y4Y 0.19 TCGA-ZG-A9N3-01 17 9804465 9804465 C T RCVRN Intron 0.29 TCGA-ZG-A9N3-01 18 72245549 72245549 C T CNDP1 Missense_Mutation p.A385V 0.35 tolerated(0.82) benign(0.001) TCGA-ZG-A9N3-01 19 18775073 18775073 C T KLHL26 Missense_Mutation p.T29M 0.15 tolerated(0.47) benign(0) TCGA-ZG-A9N3-01 19 41223697 41223697 T C ITPKC Silent p.A219A 0.12 TCGA-ZG-A9N3-01 19 45525436 45525436 G A RELB Silent p.V210V 0.34 TCGA-ZG-A9N3-01 19 51955819 51955819 C T SIGLEC8 Silent p.S438S 0.38 TCGA-ZG-A9N3-01 19 5455959 5455959 C T ZNRF4 Missense_Mutation p.R153C 0.13 tolerated(0.13) benign(0.011) TCGA-ZG-A9N3-01 19 57642355 57642355 C A USP29 Missense_Mutation p.S771Y 0.12 deleterious(0.02) benign(0.264) TCGA-ZG-A9N3-01 1 115006111 115006111 C T TRIM33 Missense_Mutation p.C238Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9N3-01 1 11596383 11596383 C T PTCHD2 Silent p.D1273D 0.41 TCGA-ZG-A9N3-01 1 117142825 117142825 C T IGSF3 Silent p.T609T 0.28 TCGA-ZG-A9N3-01 1 155735541 155735541 G C GON4L Silent p.A1241A 0.18 TCGA-ZG-A9N3-01 1 158261881 158261881 T C CD1C Silent p.F112F 0.40 TCGA-ZG-A9N3-01 1 236746154 236746154 G A HEATR1 Missense_Mutation p.P815L 0.14 deleterious(0.04) benign(0.078) TCGA-ZG-A9N3-01 20 1457915 1457915 G T SIRPB2 Intron 0.17 TCGA-ZG-A9N3-01 20 23016578 23016578 G A SSTR4 Missense_Mutation p.R153H 0.11 deleterious(0.02) possibly_damaging(0.893) TCGA-ZG-A9N3-01 20 3259591 3259591 G A C20orf194 Missense_Mutation p.L873F 0.07 deleterious(0.04) possibly_damaging(0.828) TCGA-ZG-A9N3-01 20 44444280 44444280 A G UBE2C Missense_Mutation p.N106S 0.18 deleterious(0.03) benign(0.028) TCGA-ZG-A9N3-01 20 46282356 46282356 C T NCOA3 3'UTR 0.63 TCGA-ZG-A9N3-01 22 17072764 17072764 C T CCT8L2 Missense_Mutation p.G226E 0.19 tolerated(0.06) possibly_damaging(0.824) TCGA-ZG-A9N3-01 22 51143453 51143453 G A SHANK3 Missense_Mutation p.G669D 0.24 probably_damaging(1) TCGA-ZG-A9N3-01 2 168102424 168102424 G T XIRP2 Missense_Mutation p.G1508C 0.32 possibly_damaging(0.831) TCGA-ZG-A9N3-01 2 30957343 30957343 C T CAPN13 Silent p.S590S 0.12 TCGA-ZG-A9N3-01 2 33952672 33952672 G A AC009499.1 Intron 0.38 TCGA-ZG-A9N3-01 2 9637240 9637240 C T ADAM17 Intron 0.18 TCGA-ZG-A9N3-01 3 143185954 143185954 G A SLC9A9 Missense_Mutation p.T465M 0.12 deleterious(0.02) probably_damaging(0.94) TCGA-ZG-A9N3-01 3 186395542 186395542 C T HRG Missense_Mutation p.P483L 0.37 deleterious(0) benign(0.232) TCGA-ZG-A9N3-01 3 40231802 40231802 A G MYRIP Missense_Mutation p.R505G 0.13 tolerated(0.51) benign(0) TCGA-ZG-A9N3-01 3 42569561 42569561 C A VIPR1 Silent p.I194I 0.06 TCGA-ZG-A9N3-01 4 134084164 134084164 T A PCDH10 Missense_Mutation p.C944S 0.15 tolerated(0.36) probably_damaging(0.989) TCGA-ZG-A9N3-01 4 186299165 186299165 G A LRP2BP Intron 0.21 TCGA-ZG-A9N3-01 5 140237812 140237812 G A PCDHA10 Missense_Mutation p.E727K 0.19 deleterious_low_confidence(0.04) benign(0.035) TCGA-ZG-A9N3-01 5 156638349 156638349 C T ITK Missense_Mutation p.R99W 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9N3-01 5 179050048 179050048 C A HNRNPH1 Missense_Mutation p.R29S 0.21 tolerated(0.63) benign(0.038) TCGA-ZG-A9N3-01 5 41929873 41929873 T G FBXO4 Missense_Mutation p.F167C 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9N3-01 6 117586987 117586987 G A VGLL2 Missense_Mutation p.A21T 0.20 tolerated(0.15) possibly_damaging(0.814) TCGA-ZG-A9N3-01 6 123687296 123687296 C T TRDN Silent p.A435A 0.29 TCGA-ZG-A9N3-01 6 132207857 132207857 G T ENPP1 Missense_Mutation p.S867I 0.06 deleterious(0) possibly_damaging(0.864) TCGA-ZG-A9N3-01 6 13316821 13316821 C A TBC1D7 Silent p.R167R 0.32 TCGA-ZG-A9N3-01 6 152688489 152688489 A T SYNE1 Missense_Mutation p.V3279D 0.20 possibly_damaging(0.828) TCGA-ZG-A9N3-01 6 26452087 26452087 G C BTN3A3 Silent p.V401V 0.11 TCGA-ZG-A9N3-01 6 97000426 97000426 T C UFL1 Missense_Mutation p.I685T 0.16 tolerated(0.2) benign(0.002) TCGA-ZG-A9N3-01 7 45957023 45957023 G A IGFBP3 Missense_Mutation p.S146L 0.24 deleterious(0.03) probably_damaging(0.918) TCGA-ZG-A9N3-01 7 72298681 72298681 G T TYW1B 5'UTR 0.20 TCGA-ZG-A9N3-01 8 143957228 143957228 G A CYP11B1 Missense_Mutation p.R341C 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-ZG-A9N3-01 8 74203464 74203464 C G RPL7 Missense_Mutation p.E188Q 0.29 deleterious(0) possibly_damaging(0.804) TCGA-ZG-A9N3-01 8 97243504 97243504 C T UQCRB Intron 0.32 TCGA-ZG-A9N3-01 9 16436341 16436341 C A BNC2 Missense_Mutation p.M617I 0.16 tolerated(0.35) benign(0.001) TCGA-ZG-A9N3-01 9 5921341 5921341 G A KIAA2026 Missense_Mutation p.P1552L 0.38 deleterious(0) probably_damaging(0.998) TCGA-ZG-A9N3-01 9 84607667 84607667 C T SPATA31D1 Missense_Mutation p.S761L 0.21 tolerated(0.09) possibly_damaging(0.731) TCGA-ZG-A9ND-01 10 75843162 75843162 G T VCL Nonsense_Mutation p.E305* 0.37 TCGA-ZG-A9ND-01 11 11957962 11957962 G A USP47 Missense_Mutation p.G593E 0.30 tolerated(0.06) possibly_damaging(0.707) TCGA-ZG-A9ND-01 12 46316920 46316920 A C SCAF11 Silent p.S1308S 0.35 TCGA-ZG-A9ND-01 12 50149485 50149485 A G TMBIM6 Missense_Mutation p.H136R 0.43 tolerated(0.58) benign(0.002) TCGA-ZG-A9ND-01 12 57110939 57110939 G T NACA Intron 0.30 TCGA-ZG-A9ND-01 12 57485584 57485584 C T NAB2 Missense_Mutation p.R254W 0.44 deleterious(0.02) probably_damaging(0.978) TCGA-ZG-A9ND-01 14 45403573 45403573 G T KLHL28 Missense_Mutation p.T363K 0.17 deleterious(0.03) benign(0.023) TCGA-ZG-A9ND-01 16 31226130 31226130 C T TRIM72 Missense_Mutation p.P24L 0.29 deleterious(0) possibly_damaging(0.822) TCGA-ZG-A9ND-01 17 47696432 47696432 A C SPOP Missense_Mutation p.W131G 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-ZG-A9ND-01 17 6690256 6690256 G A FBXO39 Missense_Mutation p.C394Y 0.37 deleterious(0) probably_damaging(0.969) TCGA-ZG-A9ND-01 18 50994336 50994336 G A DCC Missense_Mutation p.R1231Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9ND-01 1 202538279 202538279 G C PPP1R12B Missense_Mutation p.R939T 0.36 deleterious(0) probably_damaging(0.955) TCGA-ZG-A9ND-01 1 207644418 207644418 T - CR2 Frame_Shift_Del p.S494Lfs*8 0.29 TCGA-ZG-A9ND-01 1 40879801 40879801 A G SMAP2 Intron 0.45 TCGA-ZG-A9ND-01 22 36587725 36587725 T C APOL4 Missense_Mutation p.I151V 0.37 tolerated(0.42) benign(0.013) TCGA-ZG-A9ND-01 2 209204848 209204848 T - PIKFYVE Frame_Shift_Del p.P1643Lfs*9 0.27 TCGA-ZG-A9ND-01 2 217124081 217124081 G A MARCH4 Missense_Mutation p.P396L 0.26 tolerated(0.3) benign(0.011) TCGA-ZG-A9ND-01 2 48027960 48027960 A C MSH6 Missense_Mutation p.E946D 0.26 tolerated(0.41) benign(0.083) TCGA-ZG-A9ND-01 2 56599555 56599555 G A CCDC85A Missense_Mutation p.R465Q 0.30 tolerated_low_confidence(0.13) possibly_damaging(0.602) TCGA-ZG-A9ND-01 5 158697638 158697638 T - UBLCP1 Frame_Shift_Del p.Y146Ifs*14 0.38 TCGA-ZG-A9ND-01 5 34925038 34925038 A G BRIX1 Silent p.G250G 0.41 TCGA-ZG-A9ND-01 5 52361704 52361704 C T ITGA2 Missense_Mutation p.H614Y 0.73 tolerated(0.09) benign(0.169) TCGA-ZG-A9ND-01 5 5462222 5462222 A G KIAA0947 Silent p.S925S 0.27 TCGA-ZG-A9ND-01 5 6737723 6737723 A - PAPD7 Frame_Shift_Del p.D24Tfs*25 0.17 TCGA-ZG-A9ND-01 7 73471770 73471770 A G ELN Intron 0.23 TCGA-ZG-A9ND-01 8 125047624 125047628 TAGGC - FER1L6 Frame_Shift_Del p.G799* 0.22 TCGA-ZG-A9ND-01 8 142486090 142486090 G A MROH5 Intron 0.12 TCGA-ZG-A9ND-01 8 57878868 57878868 A G IMPAD1 Silent p.S230S 0.24 TCGA-ZG-A9ND-01 9 117405508 117405508 C G C9orf91 Missense_Mutation p.T315R 0.24 deleterious(0.05) benign(0.394) TCGA-ZG-A9ND-01 9 135254513 135254514 - T TTF1 Nonsense_Mutation p.Y799* 0.24 TCGA-ZG-A9ND-01 X 34961838 34961838 C T FAM47B Missense_Mutation p.P297L 0.74 tolerated(0.7) benign(0.002) TCGA-ZG-A9ND-01 X 54777747 54777747 G T ITIH6 Missense_Mutation p.T1140N 0.90 tolerated(0.06) probably_damaging(0.997) TCGA-ZG-A9NI-01 10 104228878 104228878 A C TMEM180 Missense_Mutation p.N31T 0.17 deleterious(0) probably_damaging(0.966) TCGA-ZG-A9NI-01 10 106075031 106075031 G T ITPRIP Missense_Mutation p.T260N 0.09 deleterious(0.01) benign(0.273) TCGA-ZG-A9NI-01 10 122348981 122348981 G T PPAPDC1A Missense_Mutation p.L261F 0.32 tolerated(0.07) possibly_damaging(0.862) TCGA-ZG-A9NI-01 10 26559644 26559644 G A GAD2 Missense_Mutation p.A351T 0.10 deleterious(0.03) possibly_damaging(0.449) TCGA-ZG-A9NI-01 10 72289648 72289648 C T PALD1 Missense_Mutation p.R98C 0.45 deleterious(0.02) benign(0.143) TCGA-ZG-A9NI-01 10 75529481 75529481 C G SEC24C Missense_Mutation p.S891C 0.10 deleterious(0) probably_damaging(0.986) TCGA-ZG-A9NI-01 10 95993811 95993811 G A PLCE1 Silent p.R652R 0.17 TCGA-ZG-A9NI-01 11 114442009 114442009 G T NXPE4 Missense_Mutation p.T429N 0.03 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9NI-01 11 118966003 118966003 C T H2AFX Silent p.L34L 0.38 TCGA-ZG-A9NI-01 11 1271515 1271515 G A MUC5B Missense_Mutation p.A4469T 0.20 benign(0.045) TCGA-ZG-A9NI-01 11 133791205 133791205 G C IGSF9B Silent p.A805A 0.27 TCGA-ZG-A9NI-01 11 134151337 134151337 G C GLB1L3 Silent p.L143L 0.11 TCGA-ZG-A9NI-01 11 32997949 32997949 G A QSER1 Missense_Mutation p.V1713I 0.08 tolerated(1) benign(0.021) TCGA-ZG-A9NI-01 11 4967661 4967661 T C OR51A4 Missense_Mutation p.K224E 0.20 deleterious(0) probably_damaging(0.938) TCGA-ZG-A9NI-01 11 56950004 56950004 A G LRRC55 Missense_Mutation p.S213G 0.23 deleterious(0.03) probably_damaging(0.979) TCGA-ZG-A9NI-01 11 74168427 74168427 A T KCNE3 Missense_Mutation p.I61N 0.22 deleterious(0) probably_damaging(0.93) TCGA-ZG-A9NI-01 11 92590447 92590447 C A FAT3 Silent p.V3811V 0.19 TCGA-ZG-A9NI-01 12 101587521 101587521 G C SLC5A8 Missense_Mutation p.Q192E 0.04 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9NI-01 12 112608163 112608163 G T HECTD4 Missense_Mutation p.T3863N 0.12 possibly_damaging(0.841) TCGA-ZG-A9NI-01 12 117603333 117603333 A C FBXO21 Missense_Mutation p.L428R 0.29 deleterious(0) probably_damaging(0.931) TCGA-ZG-A9NI-01 12 39760856 39760856 G A KIF21A Silent p.T237T 0.12 TCGA-ZG-A9NI-01 12 416934 416934 T A KDM5A Nonsense_Mutation p.K1206* 0.28 TCGA-ZG-A9NI-01 12 41900472 41900472 C A PDZRN4 Missense_Mutation p.T353N 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-ZG-A9NI-01 12 57866445 57866445 C T ARHGAP9 Missense_Mutation p.R684H 0.28 deleterious(0) probably_damaging(0.935) TCGA-ZG-A9NI-01 12 8086490 8086490 T A SLC2A3 Silent p.P8P 0.19 TCGA-ZG-A9NI-01 14 20692478 20692478 G A OR11H6 Missense_Mutation p.A204T 0.28 tolerated(0.09) benign(0.11) TCGA-ZG-A9NI-01 14 23866242 23866242 C T MYH6 Missense_Mutation p.V700M 0.23 deleterious(0) possibly_damaging(0.87) TCGA-ZG-A9NI-01 14 45645392 45645392 C T FANCM Silent p.D1145D 0.32 TCGA-ZG-A9NI-01 14 55848900 55848900 T A ATG14 Silent p.A219A 0.27 TCGA-ZG-A9NI-01 14 70634287 70634287 T A SLC8A3 Missense_Mutation p.I285F 0.13 deleterious(0.04) possibly_damaging(0.67) TCGA-ZG-A9NI-01 14 73029174 73029174 G C RGS6 Nonstop_Mutation p.*491Sext*? 0.19 TCGA-ZG-A9NI-01 14 79175953 79175953 G T NRXN3 Missense_Mutation p.D166Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-ZG-A9NI-01 15 65703655 65703655 G T IGDCC4 Missense_Mutation p.P42T 0.24 deleterious(0.03) probably_damaging(0.973) TCGA-ZG-A9NI-01 15 89074818 89074818 C T DET1 Missense_Mutation p.R51Q 0.15 deleterious(0.01) probably_damaging(0.976) TCGA-ZG-A9NI-01 16 20814811 20814811 A G ERI2 Missense_Mutation p.I40T 0.39 deleterious(0) probably_damaging(0.93) TCGA-ZG-A9NI-01 16 61689558 61689558 T C CDH8 Silent p.L574L 0.16 TCGA-ZG-A9NI-01 16 69745151 69745151 A T NQO1 Missense_Mutation p.L185I 0.10 deleterious(0) probably_damaging(0.996) TCGA-ZG-A9NI-01 17 4927385 4927385 C T KIF1C Missense_Mutation p.P1084L 0.36 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-ZG-A9NI-01 17 57754537 57754537 G T CLTC Silent p.L928L 0.11 TCGA-ZG-A9NI-01 17 67039543 67039543 G C ABCA9 Intron 0.24 TCGA-ZG-A9NI-01 17 7324689 7324689 C A SPEM1 Missense_Mutation p.A232E 0.31 tolerated(0.47) benign(0.077) TCGA-ZG-A9NI-01 17 79092217 79092217 C G AATK Missense_Mutation p.E1370D 0.32 tolerated_low_confidence(0.29) benign(0.037) TCGA-ZG-A9NI-01 18 77170782 77170782 G A NFATC1 Silent p.S156S 0.27 TCGA-ZG-A9NI-01 19 19312997 19312997 G T NR2C2AP Intron 0.60 TCGA-ZG-A9NI-01 19 36348367 36348367 T A KIRREL2 Missense_Mutation p.L61Q 0.20 deleterious(0) probably_damaging(0.93) TCGA-ZG-A9NI-01 19 41745622 41745622 C T AXL Silent p.L437L 0.12 TCGA-ZG-A9NI-01 19 58190197 58190197 C G ZSCAN4 Missense_Mutation p.S409C 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9NI-01 1 161789484 161789484 G A ATF6 Missense_Mutation p.R324H 0.10 deleterious(0) probably_damaging(1) TCGA-ZG-A9NI-01 1 161989785 161989785 G A OLFML2B Missense_Mutation p.P121L 0.14 deleterious(0) probably_damaging(0.931) TCGA-ZG-A9NI-01 1 179820467 179820467 T A TOR1AIP2 Silent p.S22S 0.05 TCGA-ZG-A9NI-01 1 196392206 196392206 G A KCNT2 Missense_Mutation p.R387C 0.28 deleterious(0) probably_damaging(0.997) TCGA-ZG-A9NI-01 1 210414981 210414981 G C SERTAD4 Missense_Mutation p.V124L 0.17 deleterious(0.02) possibly_damaging(0.753) TCGA-ZG-A9NI-01 1 223980219 223980228 ATCAACCTAT - TP53BP2 Splice_Site p.X955_splice 0.29 TCGA-ZG-A9NI-01 1 235597548 235597548 C T TBCE Silent p.G230G 0.08 TCGA-ZG-A9NI-01 1 243809322 243809322 G C AKT3 Missense_Mutation p.A101G 0.28 deleterious(0.02) possibly_damaging(0.781) TCGA-ZG-A9NI-01 1 39815268 39815268 C G MACF1 Missense_Mutation p.S1583C 0.37 possibly_damaging(0.669) TCGA-ZG-A9NI-01 1 90048805 90048805 T C LRRC8B Missense_Mutation p.I199T 0.19 tolerated(0.59) benign(0) TCGA-ZG-A9NI-01 20 20517346 20517346 G T RALGAPA2 Nonsense_Mutation p.S1123* 0.38 TCGA-ZG-A9NI-01 20 46313221 46313221 C T SULF2 Missense_Mutation p.R281Q 0.31 tolerated(0.15) benign(0.187) TCGA-ZG-A9NI-01 21 30439889 30439889 C G CCT8 Silent p.L123L 0.22 TCGA-ZG-A9NI-01 21 30439992 30439992 G A CCT8 Missense_Mutation p.A89V 0.18 deleterious(0.01) possibly_damaging(0.888) TCGA-ZG-A9NI-01 21 42771265 42771268 GTAA - MX2 Splice_Site p.X472_splice 0.20 TCGA-ZG-A9NI-01 21 47693423 47693423 C T MCM3AP Missense_Mutation p.R692Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9NI-01 22 21167790 21167790 G A PI4KA Silent p.S287S 0.09 TCGA-ZG-A9NI-01 22 42807644 42807644 G T NFAM1 Missense_Mutation p.Q74K 0.07 tolerated(0.88) benign(0.007) TCGA-ZG-A9NI-01 2 11955224 11955224 A T LPIN1 Nonsense_Mutation p.K803* 0.08 TCGA-ZG-A9NI-01 2 141291667 141291667 C T LRP1B Missense_Mutation p.R2562H 0.25 possibly_damaging(0.812) TCGA-ZG-A9NI-01 2 176995668 176995668 C A HOXD8 Missense_Mutation p.Q192K 0.23 deleterious(0.01) possibly_damaging(0.695) TCGA-ZG-A9NI-01 2 224462648 224462648 C T SCG2 Silent p.S451S 0.30 TCGA-ZG-A9NI-01 2 231112746 231112746 G C SP140 Missense_Mutation p.E286D 0.12 tolerated(0.44) benign(0.157) TCGA-ZG-A9NI-01 2 233899168 233899168 C T NEU2 Missense_Mutation p.R182W 0.21 tolerated(0.17) benign(0.201) TCGA-ZG-A9NI-01 2 24526684 24526684 G A ITSN2 Nonsense_Mutation p.Q281* 0.31 TCGA-ZG-A9NI-01 2 36691745 36691745 C G CRIM1 Missense_Mutation p.S313C 0.13 deleterious(0.01) probably_damaging(0.987) TCGA-ZG-A9NI-01 2 75917824 75917824 C G GCFC2 Missense_Mutation p.S389T 0.21 deleterious(0.03) benign(0.008) TCGA-ZG-A9NI-01 3 128755841 128755841 G C EFCC1 Missense_Mutation p.E491Q 0.10 tolerated(0.06) benign(0.066) TCGA-ZG-A9NI-01 3 185434659 185434659 T G C3orf65 3'UTR 0.50 TCGA-ZG-A9NI-01 3 47084145 47084146 - G SETD2 Frame_Shift_Ins p.S2382Lfs*47 0.21 TCGA-ZG-A9NI-01 3 50290538 50290538 G A GNAI2 Missense_Mutation p.R129Q 0.29 tolerated(0.19) benign(0.005) TCGA-ZG-A9NI-01 3 52326966 52326966 A T GLYCTK Missense_Mutation p.T466S 0.33 tolerated(1) benign(0.037) TCGA-ZG-A9NI-01 4 126370935 126370935 G T FAT4 Missense_Mutation p.A2922S 0.34 benign(0.1) TCGA-ZG-A9NI-01 4 149181195 149181195 G A NR3C2 Missense_Mutation p.S611L 0.14 deleterious(0) possibly_damaging(0.637) TCGA-ZG-A9NI-01 4 154625865 154625865 C G TLR2 Missense_Mutation p.I602M 0.10 deleterious(0.03) benign(0.01) TCGA-ZG-A9NI-01 5 122717825 122717825 C G CEP120 Missense_Mutation p.E695Q 0.18 deleterious(0.02) possibly_damaging(0.855) TCGA-ZG-A9NI-01 5 135231281 135231281 T - IL9 Splice_Site p.X39_splice 0.13 TCGA-ZG-A9NI-01 5 59064394 59064394 A T PDE4D Intron 0.28 TCGA-ZG-A9NI-01 5 74685512 74685512 C G COL4A3BP Missense_Mutation p.V525L 0.43 tolerated(0.22) benign(0.042) TCGA-ZG-A9NI-01 6 46678365 46678365 C T PLA2G7 Missense_Mutation p.A232T 0.27 deleterious(0) probably_damaging(0.999) TCGA-ZG-A9NI-01 6 49425723 49425723 C A MUT Missense_Mutation p.G145V 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZG-A9NI-01 6 49425724 49425724 C A MUT Missense_Mutation p.G145C 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-ZG-A9NI-01 6 88240657 88240657 A - RARS2 Frame_Shift_Del p.Y206Mfs*14 0.28 TCGA-ZG-A9NI-01 7 117432749 117432749 G T CTTNBP2 Missense_Mutation p.N167K 0.17 deleterious(0) probably_damaging(1) TCGA-ZG-A9NI-01 7 156469181 156469181 C T RNF32 Silent p.R307R 0.18 TCGA-ZG-A9NI-01 7 35293132 35293132 C A TBX20 Missense_Mutation p.A34S 0.11 tolerated(0.86) benign(0.001) TCGA-ZG-A9NI-01 7 82545234 82545234 C T PCLO Missense_Mutation p.S4023N 0.39 unknown(0) TCGA-ZG-A9NI-01 7 82764229 82764229 A G PCLO Silent p.P879P 0.10 TCGA-ZG-A9NI-01 8 110420367 110420367 G T PKHD1L1 Nonsense_Mutation p.E635* 0.11 TCGA-ZG-A9NI-01 8 125499802 125499802 G A RNF139 Missense_Mutation p.D638N 0.09 deleterious(0.05) benign(0.024) TCGA-ZG-A9NI-01 8 87878731 87878731 T C CNBD1 Missense_Mutation p.M3T 0.18 deleterious(0.01) benign(0.115) TCGA-ZG-A9NI-01 9 139115851 139115855 ACTGA - QSOX2 Splice_Site p.X194_splice 0.35 TCGA-ZG-A9NI-01 X 118678353 118678353 G A CXorf56 Missense_Mutation p.T129M 0.30 tolerated(0.08) probably_damaging(0.941) TCGA-ZG-A9NI-01 X 23956757 23956757 G C CXorf58 Missense_Mutation p.M293I 0.50 tolerated(0.2) benign(0.009) TCGA-ZG-A9NI-01 X 3240713 3240713 G T MXRA5 Missense_Mutation p.P1005T 0.28 tolerated(0.19) benign(0.002) TCGA-ZG-A9NI-01 X 43655005 43655005 A C MAOB Missense_Mutation p.L250R 0.38 tolerated(0.05) benign(0.109)