sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-AF-2687-01 10 1130478 1130478 G A WDR37 Missense_Mutation p.D178N 0.30 deleterious(0) probably_damaging(0.989) TCGA-AF-2687-01 10 14896137 14896137 G A HSPA14 Missense_Mutation p.D250N 0.10 deleterious(0.02) benign(0.092) TCGA-AF-2687-01 11 110450666 110450666 G A ARHGAP20 Missense_Mutation p.P1002S 0.13 tolerated(0.27) benign(0.143) TCGA-AF-2687-01 11 125478127 125478127 G A STT3A Missense_Mutation p.V302I 0.13 tolerated(0.4) benign(0.009) TCGA-AF-2687-01 11 26620415 26620415 G A ANO3 Missense_Mutation p.R514H 0.32 deleterious(0) probably_damaging(0.997) TCGA-AF-2687-01 11 44101124 44101124 G A ACCS Missense_Mutation p.V293M 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-AF-2687-01 11 45672345 45672345 G A CHST1 Silent p.A43A 0.15 TCGA-AF-2687-01 11 46903378 46903378 T C LRP4 Missense_Mutation p.I897V 0.18 tolerated(0.07) possibly_damaging(0.823) TCGA-AF-2687-01 11 58034983 58034983 G T OR10W1 Silent p.A116A 0.06 TCGA-AF-2687-01 11 621658 621658 C T CDHR5 Silent p.T137T 0.17 TCGA-AF-2687-01 12 101745962 101745962 C T UTP20 Silent p.L1672L 0.33 TCGA-AF-2687-01 12 10205306 10205306 A G CLEC9A Missense_Mutation p.Y7C 0.27 deleterious(0) probably_damaging(0.996) TCGA-AF-2687-01 12 112601455 112601455 C T HECTD4 Missense_Mutation p.R4117Q 0.39 benign(0.436) TCGA-AF-2687-01 12 20766516 20766516 A T PDE3A Missense_Mutation p.Q384L 0.21 deleterious(0) probably_damaging(0.978) TCGA-AF-2687-01 12 30862620 30862620 C T CAPRIN2 3'UTR 0.36 TCGA-AF-2687-01 12 5023463 5023463 C A KCNA1 3'UTR 0.18 TCGA-AF-2687-01 12 56383809 56383809 G A RAB5B Missense_Mutation p.R81Q 0.43 deleterious(0.03) possibly_damaging(0.846) TCGA-AF-2687-01 12 58007150 58007150 G A ARHGEF25 Intron 0.15 TCGA-AF-2687-01 12 58189993 58189993 C T TSFM Missense_Mutation p.A223V 0.20 deleterious(0) probably_damaging(0.996) TCGA-AF-2687-01 14 102792384 102792384 G A ZNF839 Missense_Mutation p.M117I 0.20 deleterious(0.05) benign(0.011) TCGA-AF-2687-01 14 26917280 26917280 C T NOVA1 Missense_Mutation p.R470Q 0.32 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 14 33293318 33293318 G A AKAP6 Missense_Mutation p.R2100Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-AF-2687-01 14 50807788 50807788 G A CDKL1 Missense_Mutation p.S207L 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-AF-2687-01 14 59819301 59819301 G A DAAM1 Missense_Mutation p.E750K 0.25 deleterious(0.01) possibly_damaging(0.85) TCGA-AF-2687-01 14 62542056 62542056 C T SYT16 Missense_Mutation p.R314W 0.29 deleterious(0) possibly_damaging(0.582) TCGA-AF-2687-01 14 93303792 93303792 A G GOLGA5 Missense_Mutation p.M705V 0.31 deleterious(0.01) probably_damaging(0.958) TCGA-AF-2687-01 15 41228533 41228533 G A DLL4 Missense_Mutation p.A450T 0.32 tolerated(0.17) benign(0.012) TCGA-AF-2687-01 16 2369796 2369796 C A ABCA3 Missense_Mutation p.R220L 0.11 deleterious(0.01) benign(0.115) TCGA-AF-2687-01 16 32264907 32264907 C G TP53TG3D Nonsense_Mutation p.S78* 0.05 TCGA-AF-2687-01 16 4411003 4411003 G T CORO7 Missense_Mutation p.R620S 0.24 deleterious(0.01) possibly_damaging(0.86) TCGA-AF-2687-01 16 50745482 50745482 G A NOD2 Missense_Mutation p.A554T 0.22 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 16 55703563 55703563 C T SLC6A2 Missense_Mutation p.R121W 0.30 deleterious(0) probably_damaging(0.999) TCGA-AF-2687-01 16 67212282 67212282 G C KIAA0895L Missense_Mutation p.L325V 0.23 deleterious(0.01) probably_damaging(0.98) TCGA-AF-2687-01 16 71417308 71417308 G A CALB2 Silent p.P146P 0.28 TCGA-AF-2687-01 16 89178630 89178630 G A ACSF3 Missense_Mutation p.R318H 0.27 tolerated(0.1) possibly_damaging(0.458) TCGA-AF-2687-01 17 18210248 18210248 G T TOP3A Missense_Mutation p.A116E 0.41 deleterious(0) probably_damaging(0.945) TCGA-AF-2687-01 17 39596785 39596785 G A KRT38 Missense_Mutation p.A130V 0.36 deleterious(0.03) benign(0.082) TCGA-AF-2687-01 17 43182230 43182230 G A NMT1 Missense_Mutation p.G446R 0.38 deleterious(0) benign(0.41) TCGA-AF-2687-01 17 43196189 43196189 G T PLCD3 Missense_Mutation p.N302K 0.22 deleterious(0.01) probably_damaging(0.94) TCGA-AF-2687-01 17 46265270 46265270 G A SKAP1 Missense_Mutation p.S126L 0.19 tolerated(0.1) benign(0.247) TCGA-AF-2687-01 17 61561265 61561265 G T ACE Missense_Mutation p.A548S 0.30 tolerated(0.28) probably_damaging(0.999) TCGA-AF-2687-01 17 73481572 73481572 C T KIAA0195 Silent p.L30L 0.18 TCGA-AF-2687-01 17 73922457 73922457 C T FBF1 Missense_Mutation p.E202K 0.28 deleterious(0.03) benign(0.114) TCGA-AF-2687-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.56 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 18 11853854 11853854 C A CHMP1B 3'UTR 0.08 TCGA-AF-2687-01 18 13826402 13826402 G A MC5R Missense_Mutation p.R213Q 0.22 tolerated(0.09) benign(0.039) TCGA-AF-2687-01 18 22025371 22025371 T A IMPACT Silent p.L203L 0.12 TCGA-AF-2687-01 18 335079 335079 G T COLEC12 Silent p.P493P 0.23 TCGA-AF-2687-01 18 76754048 76754048 G A SALL3 Missense_Mutation p.R686Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-AF-2687-01 19 12984570 12984570 G A MAST1 Missense_Mutation p.G1200D 0.57 deleterious(0) probably_damaging(0.999) TCGA-AF-2687-01 19 31040254 31040254 A T ZNF536 Missense_Mutation p.D1243V 0.22 deleterious_low_confidence(0.02) benign(0.247) TCGA-AF-2687-01 19 4307965 4307965 C T FSD1 Silent p.S110S 0.38 TCGA-AF-2687-01 19 44047785 44047785 T C XRCC1 Silent p.E589E 0.60 TCGA-AF-2687-01 19 46443951 46443951 C T NOVA2 Missense_Mutation p.V217M 0.60 deleterious(0) unknown(0) TCGA-AF-2687-01 19 7509123 7509123 C T ARHGEF18 Missense_Mutation p.T277M 0.24 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 1 109897121 109897121 A T SORT1 Missense_Mutation p.S192R 0.19 tolerated(0.08) benign(0.032) TCGA-AF-2687-01 1 118514603 118514603 T C SPAG17 Missense_Mutation p.K2070R 0.08 tolerated(0.87) benign(0.036) TCGA-AF-2687-01 1 159846349 159846349 A T CCDC19 Missense_Mutation p.L450H 0.43 deleterious(0) probably_damaging(0.998) TCGA-AF-2687-01 1 172017862 172017862 T C DNM3 Missense_Mutation p.I436T 0.15 tolerated(0.3) benign(0.039) TCGA-AF-2687-01 1 192127714 192127714 A C RGS18 5'UTR 0.24 TCGA-AF-2687-01 1 200870129 200870129 G A C1orf106 Missense_Mutation p.R121Q 0.15 tolerated(0.06) benign(0.135) TCGA-AF-2687-01 1 205779618 205779618 T C SLC41A1 5'UTR 0.16 TCGA-AF-2687-01 1 228003502 228003502 C T PRSS38 Missense_Mutation p.R29W 0.24 tolerated(0.06) unknown(0) TCGA-AF-2687-01 1 240374513 240374513 T C FMN2 Missense_Mutation p.I1348T 0.17 possibly_damaging(0.557) TCGA-AF-2687-01 1 27099905 27099905 C T ARID1A Missense_Mutation p.R1262C 0.16 unknown(0) TCGA-AF-2687-01 1 36553586 36553586 C T TEKT2 Silent p.D364D 0.17 TCGA-AF-2687-01 1 52876804 52876804 G A PRPF38A Missense_Mutation p.V144I 0.23 tolerated(0.15) possibly_damaging(0.531) TCGA-AF-2687-01 1 75009677 75009677 C T TNNI3K 3'UTR 0.18 TCGA-AF-2687-01 1 79002251 79002251 G T PTGFR Missense_Mutation p.S320I 0.18 tolerated(0.12) benign(0.019) TCGA-AF-2687-01 1 82456643 82456643 G C LPHN2 Missense_Mutation p.R1342S 0.20 tolerated_low_confidence(0.32) benign(0.149) TCGA-AF-2687-01 20 2293561 2293561 C T TGM3 Silent p.L186L 0.43 TCGA-AF-2687-01 20 31652531 31652531 C T BPIFB3 Silent p.A268A 0.11 TCGA-AF-2687-01 20 46264690 46264690 C A NCOA3 Missense_Mutation p.S520R 0.25 deleterious(0) probably_damaging(0.964) TCGA-AF-2687-01 20 48741643 48741643 G A TMEM189 Intron 0.23 TCGA-AF-2687-01 20 60927304 60927304 G A LAMA5 Silent p.N227N 0.40 TCGA-AF-2687-01 20 62059776 62059776 C T KCNQ2 Silent p.P387P 0.10 TCGA-AF-2687-01 21 28338453 28338453 C A ADAMTS5 Missense_Mutation p.K86N 0.29 deleterious(0.01) probably_damaging(0.975) TCGA-AF-2687-01 22 30772726 30772726 C T CCDC157 Missense_Mutation p.P751S 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-AF-2687-01 2 179406125 179406125 C T TTN Missense_Mutation p.R32560H 0.11 TCGA-AF-2687-01 2 180008366 180008366 G A SESTD1 Missense_Mutation p.R268C 0.35 deleterious(0) possibly_damaging(0.642) TCGA-AF-2687-01 2 207027530 207027530 G C EEF1B2 Missense_Mutation p.D201H 0.15 deleterious(0) possibly_damaging(0.457) TCGA-AF-2687-01 2 210678443 210678443 C T UNC80 Nonsense_Mutation p.R360* 0.22 TCGA-AF-2687-01 2 220396778 220396778 G A ASIC4 Silent p.P388P 0.40 TCGA-AF-2687-01 2 230723870 230723870 C T TRIP12 Silent p.A173A 0.17 TCGA-AF-2687-01 2 51254920 51254920 G T NRXN1 Silent p.A164A 0.24 TCGA-AF-2687-01 3 3139627 3139627 C A IL5RA Silent p.A212A 0.14 TCGA-AF-2687-01 3 447306 447306 C A CHL1 Nonsense_Mutation p.S1196* 0.15 TCGA-AF-2687-01 3 45052911 45052911 T G EXOSC7 3'UTR 0.12 TCGA-AF-2687-01 4 153247367 153247367 G A FBXW7 Nonsense_Mutation p.R479* 0.67 TCGA-AF-2687-01 4 160274960 160274960 A G RAPGEF2 Silent p.Q1310Q 0.57 TCGA-AF-2687-01 4 164272326 164272326 G A NPY5R Missense_Mutation p.E301K 0.29 tolerated(0.93) benign(0) TCGA-AF-2687-01 4 164394568 164394568 C A TKTL2 Missense_Mutation p.D107Y 0.39 deleterious(0.02) benign(0.135) TCGA-AF-2687-01 4 6064099 6064099 G A JAKMIP1 Silent p.R500R 0.21 TCGA-AF-2687-01 5 1253913 1253913 G A TERT Missense_Mutation p.T1110M 0.46 tolerated(0.1) benign(0.432) TCGA-AF-2687-01 5 126154824 126154824 G A LMNB1 Missense_Mutation p.E384K 0.12 deleterious(0) probably_damaging(0.997) TCGA-AF-2687-01 5 133900193 133900193 G A JADE2 Missense_Mutation p.G288S 0.15 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 5 140230003 140230003 C T PCDHA9 Silent p.D641D 0.24 TCGA-AF-2687-01 5 140236912 140236912 C T PCDHA10 Missense_Mutation p.R427W 0.39 deleterious_low_confidence(0.04) probably_damaging(0.967) TCGA-AF-2687-01 5 140574587 140574587 T A PCDHB10 3'UTR 0.17 TCGA-AF-2687-01 5 140767652 140767652 C T PCDHGB4 Silent p.R67R 0.12 TCGA-AF-2687-01 5 169309687 169309687 G A FAM196B Missense_Mutation p.R406W 0.24 deleterious(0) possibly_damaging(0.736) TCGA-AF-2687-01 5 178139770 178139770 C T ZNF354A Missense_Mutation p.R370H 0.17 tolerated(0.06) benign(0.013) TCGA-AF-2687-01 5 179263547 179263547 C T SQSTM1 Missense_Mutation p.A426V 0.19 deleterious(0) probably_damaging(0.936) TCGA-AF-2687-01 5 32263283 32263283 G A MTMR12 Missense_Mutation p.R217W 0.05 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 5 56174855 56174855 G T MAP3K1 Nonsense_Mutation p.E672* 0.41 TCGA-AF-2687-01 6 111312960 111312960 A G RPF2 Missense_Mutation p.T69A 0.14 tolerated(0.51) benign(0.035) TCGA-AF-2687-01 6 146264455 146264455 A G SHPRH Missense_Mutation p.C688R 0.09 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 6 150386726 150386726 C T ULBP3 Missense_Mutation p.G146R 0.08 deleterious(0) probably_damaging(1) TCGA-AF-2687-01 6 152786502 152786502 A G SYNE1 Missense_Mutation p.L608P 0.14 probably_damaging(0.995) TCGA-AF-2687-01 6 39832277 39832277 G T DAAM2 Missense_Mutation p.M109I 0.32 tolerated(0.09) probably_damaging(0.921) TCGA-AF-2687-01 6 90718472 90718472 C T BACH2 Missense_Mutation p.R31Q 0.33 deleterious(0) probably_damaging(0.973) TCGA-AF-2687-01 7 103844668 103844668 G C ORC5 Missense_Mutation p.S29R 0.18 tolerated(0.22) possibly_damaging(0.642) TCGA-AF-2687-01 7 131815003 131815003 C T PLXNA4 3'UTR 0.20 TCGA-AF-2687-01 7 143096856 143096856 G A EPHA1 Silent p.P241P 0.31 TCGA-AF-2687-01 7 158552174 158552174 T C ESYT2 Intron 0.21 TCGA-AF-2687-01 7 1786670 1786670 A C ELFN1 Missense_Mutation p.H813P 0.09 deleterious(0) probably_damaging(0.991) TCGA-AF-2687-01 7 35284653 35284653 C A TBX20 Missense_Mutation p.D188Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-AF-2687-01 7 37907433 37907433 C A NME8 Silent p.R251R 0.22 TCGA-AF-2687-01 7 4088987 4088987 C T SDK1 Silent p.T870T 0.44 TCGA-AF-2687-01 7 42972035 42972035 G C MRPL32 Missense_Mutation p.R17P 0.26 tolerated_low_confidence(0.08) benign(0.007) TCGA-AF-2687-01 7 5112751 5112751 G T RBAK-RBAKDN 3'UTR 0.19 TCGA-AF-2687-01 7 77408253 77408253 A G RSBN1L Missense_Mutation p.N770S 0.20 tolerated_low_confidence(0.2) benign(0.015) TCGA-AF-2687-01 7 91667975 91667975 A G AKAP9 Silent p.E1527E 0.08 TCGA-AF-2687-01 7 98574650 98574650 C T TRRAP Missense_Mutation p.S2772L 0.07 benign(0.018) TCGA-AF-2687-01 8 133187813 133187813 G A KCNQ3 Missense_Mutation p.L274F 0.33 tolerated(0.68) probably_damaging(1) TCGA-AF-2687-01 8 141297730 141297730 G A TRAPPC9 Missense_Mutation p.T751M 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-AF-2687-01 8 86572754 86572754 G A REXO1L1P 3'UTR 0.15 TCGA-AF-2687-01 8 88885717 88885717 C T DCAF4L2 Silent p.A161A 0.21 TCGA-AF-2687-01 9 103111471 103111471 T G TEX10 Missense_Mutation p.I59L 0.21 deleterious(0.01) benign(0.023) TCGA-AF-2687-01 9 131670815 131670815 G T LRRC8A Missense_Mutation p.D458Y 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-AF-2687-01 9 136905299 136905313 CTTCTTCTCCTTCTC - BRD3 In_Frame_Del p.E496_K500del 0.12 TCGA-AF-2687-01 9 139289753 139289753 G A SNAPC4 Silent p.G156G 0.25 TCGA-AF-2687-01 9 27949965 27949965 C A LINGO2 Missense_Mutation p.W235C 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-AF-2687-01 9 6015511 6015511 C T RANBP6 Missense_Mutation p.V33M 0.23 deleterious(0.02) possibly_damaging(0.535) TCGA-AF-2687-01 9 86903016 86903016 A G SLC28A3 Silent p.P409P 0.23 TCGA-AF-2687-01 X 109388058 109388058 G C TMEM164 Missense_Mutation p.Q180H 0.62 tolerated(0.07) possibly_damaging(0.823) TCGA-AF-2687-01 X 128888545 128888545 A G XPNPEP2 Missense_Mutation p.D402G 0.41 deleterious(0.03) possibly_damaging(0.555) TCGA-AF-2687-01 X 140271175 140271175 G A LDOC1 Missense_Mutation p.A11V 0.24 tolerated(0.09) possibly_damaging(0.873) TCGA-AF-2687-01 X 90692199 90692199 G T PABPC5 3'UTR 0.64 TCGA-AF-2690-01 10 101656065 101656065 C A DNMBP Missense_Mutation p.V1004F 0.31 deleterious(0) probably_damaging(1) TCGA-AF-2690-01 10 104120143 104120143 C T GBF1 Silent p.H460H 0.17 TCGA-AF-2690-01 10 106924114 106924114 G A SORCS3 Missense_Mutation p.D596N 0.30 deleterious(0.01) possibly_damaging(0.84) TCGA-AF-2690-01 11 33667412 33667412 G A KIAA1549L Missense_Mutation p.A1567T 0.27 deleterious(0.05) possibly_damaging(0.873) TCGA-AF-2690-01 11 56230655 56230655 C T OR5M9 Missense_Mutation p.V75I 0.20 tolerated(0.44) benign(0.078) TCGA-AF-2690-01 11 57379358 57379358 C T SERPING1 Missense_Mutation p.R400C 0.39 deleterious(0) probably_damaging(0.98) TCGA-AF-2690-01 11 65726356 65726356 G A SART1 5'Flank 0.32 TCGA-AF-2690-01 11 86521397 86521397 C T PRSS23 3'UTR 0.32 TCGA-AF-2690-01 11 89947250 89947250 T C CHORDC1 Missense_Mutation p.K89E 0.31 deleterious(0.01) benign(0.302) TCGA-AF-2690-01 11 94703206 94703206 G C CWC15 Missense_Mutation p.L130V 0.28 tolerated(0.07) benign(0.001) TCGA-AF-2690-01 12 33031126 33031126 C T PKP2 Missense_Mutation p.V230I 0.14 tolerated(0.09) benign(0.048) TCGA-AF-2690-01 12 48866491 48866491 C T ANP32D Missense_Mutation p.T15M 0.29 deleterious(0.04) benign(0.024) TCGA-AF-2690-01 12 52881728 52881728 A G KRT6A Missense_Mutation p.S491P 0.33 deleterious(0) probably_damaging(0.961) TCGA-AF-2690-01 12 75444912 75444912 C T KCNC2 Silent p.V291V 0.11 TCGA-AF-2690-01 12 79988125 79988125 A G PAWR Missense_Mutation p.I307T 0.28 deleterious(0) probably_damaging(0.922) TCGA-AF-2690-01 13 111532440 111532440 G A ANKRD10 Silent p.S269S 0.14 TCGA-AF-2690-01 13 26923320 26923321 - T CDK8 Splice_Site p.X105_splice 0.31 TCGA-AF-2690-01 13 36348682 36348682 G A DCLK1 3'UTR 0.22 TCGA-AF-2690-01 14 23057875 23057875 A G DAD1 Silent p.C63C 0.08 TCGA-AF-2690-01 14 81534616 81534616 G A TSHR Silent p.V87V 0.35 TCGA-AF-2690-01 15 93588632 93588632 G A RGMA Missense_Mutation p.R325W 0.32 deleterious(0.04) probably_damaging(0.967) TCGA-AF-2690-01 16 15692876 15692876 T C KIAA0430 Missense_Mutation p.S1607G 0.19 tolerated(0.34) benign(0) TCGA-AF-2690-01 16 67695552 67695552 G A PARD6A Silent p.P86P 0.21 TCGA-AF-2690-01 16 69776472 69776473 - T NOB1 Nonsense_Mutation p.Y334* 0.17 TCGA-AF-2690-01 16 74949816 74949816 C T WDR59 Silent p.Q392Q 0.16 TCGA-AF-2690-01 16 81087555 81087555 G A RP11-303E16.5 5'Flank 0.14 TCGA-AF-2690-01 16 88904156 88904156 G A GALNS Missense_Mutation p.P147L 0.29 deleterious(0.05) possibly_damaging(0.461) TCGA-AF-2690-01 17 11461272 11461272 C A SHISA6 Missense_Mutation p.P436H 0.48 deleterious(0) probably_damaging(0.911) TCGA-AF-2690-01 17 40272106 40272106 C T KAT2A Missense_Mutation p.R214Q 0.14 tolerated(0.39) benign(0.025) TCGA-AF-2690-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.46 deleterious(0) probably_damaging(1) TCGA-AF-2690-01 18 48604787 48604787 G C SMAD4 Missense_Mutation p.D537H 0.33 deleterious(0) probably_damaging(1) TCGA-AF-2690-01 19 15220526 15220526 G A SYDE1 Missense_Mutation p.A148T 0.18 tolerated(0.56) benign(0.001) TCGA-AF-2690-01 19 30934541 30934541 C T ZNF536 Silent p.P24P 0.11 TCGA-AF-2690-01 19 33642162 33642162 G A WDR88 Missense_Mutation p.R252K 0.13 tolerated(0.56) benign(0.046) TCGA-AF-2690-01 19 35762040 35762040 C T USF2 Silent p.N241N 0.13 TCGA-AF-2690-01 19 419011 419011 C T SHC2 Missense_Mutation p.D556N 0.09 tolerated(0.85) benign(0.053) TCGA-AF-2690-01 19 49206636 49206636 G A FUT2 Silent p.P141P 0.24 TCGA-AF-2690-01 19 50165458 50165458 G A IRF3 Silent p.V243V 0.16 TCGA-AF-2690-01 19 54244626 54244626 G A MIR517C RNA 0.15 TCGA-AF-2690-01 19 56206694 56206694 C G EPN1 Missense_Mutation p.A654G 0.25 tolerated(0.09) possibly_damaging(0.801) TCGA-AF-2690-01 19 56538965 56538965 C T NLRP5 Missense_Mutation p.R456C 0.25 tolerated(0.12) benign(0.003) TCGA-AF-2690-01 19 8654796 8654796 T C ADAMTS10 Missense_Mutation p.Y626C 0.09 deleterious(0) possibly_damaging(0.8) TCGA-AF-2690-01 1 111216975 111216975 G T KCNA3 Silent p.R153R 0.51 TCGA-AF-2690-01 1 1430915 1430915 C T ATAD3B Silent p.D555D 0.38 TCGA-AF-2690-01 1 175325554 175325554 G A TNR Missense_Mutation p.R1007W 0.20 deleterious(0) possibly_damaging(0.67) TCGA-AF-2690-01 1 197390429 197390429 G A CRB1 Missense_Mutation p.D491N 0.29 tolerated(1) benign(0) TCGA-AF-2690-01 1 214818953 214818953 G A CENPF Missense_Mutation p.E2014K 0.18 benign(0.04) TCGA-AF-2690-01 1 224377539 224377539 C T DEGS1 Missense_Mutation p.P115S 0.34 deleterious(0.01) possibly_damaging(0.687) TCGA-AF-2690-01 1 228521459 228521459 G A OBSCN Silent p.S6301S 0.12 TCGA-AF-2690-01 20 33587055 33587055 C T MYH7B Missense_Mutation p.R1505W 0.31 benign(0.001) TCGA-AF-2690-01 20 35431476 35431476 C T SOGA1 Missense_Mutation p.R1041Q 0.07 tolerated(0.31) possibly_damaging(0.787) TCGA-AF-2690-01 20 36959491 36959491 C T BPI Missense_Mutation p.P428L 0.35 tolerated(0.12) benign(0.358) TCGA-AF-2690-01 20 37464708 37464708 G A PPP1R16B Missense_Mutation p.R47H 0.10 deleterious(0.01) possibly_damaging(0.867) TCGA-AF-2690-01 20 44869725 44869725 C T CDH22 Missense_Mutation p.A143T 0.12 tolerated(0.63) possibly_damaging(0.687) TCGA-AF-2690-01 20 45355581 45355581 G A SLC2A10 Nonsense_Mutation p.W456* 0.09 TCGA-AF-2690-01 20 57019545 57019545 A G VAPB 3'UTR 0.23 TCGA-AF-2690-01 21 43771057 43771057 G A TFF2 Nonsense_Mutation p.R4* 0.16 TCGA-AF-2690-01 22 34046364 34046364 C G LARGE Missense_Mutation p.E133Q 0.23 tolerated(0.44) benign(0.003) TCGA-AF-2690-01 22 39917837 39917837 T C ATF4 Silent p.L96L 0.16 TCGA-AF-2690-01 22 42416070 42416070 G A WBP2NL Missense_Mutation p.A126T 0.32 deleterious(0) probably_damaging(0.912) TCGA-AF-2690-01 2 107040247 107040247 G A RGPD3 Silent p.H1392H 0.13 TCGA-AF-2690-01 2 113333083 113333083 C T POLR1B Missense_Mutation p.S1062L 0.40 deleterious(0) probably_damaging(0.999) TCGA-AF-2690-01 2 141625689 141625689 C A LRP1B Missense_Mutation p.R1438M 0.10 possibly_damaging(0.507) TCGA-AF-2690-01 2 167313544 167313544 C A SCN7A Missense_Mutation p.V376L 0.47 tolerated(0.5) benign(0.015) TCGA-AF-2690-01 2 179422501 179422501 T G TTN Silent p.R29194R 0.11 TCGA-AF-2690-01 2 18764135 18764135 G A NT5C1B Silent p.Y400Y 0.23 TCGA-AF-2690-01 2 210769586 210769586 G T UNC80 Missense_Mutation p.R1494L 0.20 probably_damaging(0.986) TCGA-AF-2690-01 2 220422191 220422191 G A OBSL1 Missense_Mutation p.R1314W 0.23 deleterious(0) probably_damaging(0.999) TCGA-AF-2690-01 2 226447186 226447186 C T NYAP2 Silent p.D351D 0.10 TCGA-AF-2690-01 2 231775220 231775220 C T GPR55 Missense_Mutation p.S153N 0.41 deleterious(0.02) possibly_damaging(0.714) TCGA-AF-2690-01 3 124630967 124630967 T G MUC13 Silent p.G411G 0.15 TCGA-AF-2690-01 3 14564548 14564548 C T GRIP2 RNA 0.13 TCGA-AF-2690-01 3 183707137 183707137 C T ABCC5 Missense_Mutation p.R55Q 0.12 tolerated_low_confidence(0.09) possibly_damaging(0.67) TCGA-AF-2690-01 3 47045571 47045571 C T NBEAL2 Silent p.I1962I 0.16 TCGA-AF-2690-01 3 51694101 51694101 A G RAD54L2 Missense_Mutation p.K1126E 0.13 deleterious(0.03) benign(0.177) TCGA-AF-2690-01 3 52818324 52818324 G A ITIH1 Missense_Mutation p.R413H 0.32 tolerated(0.55) benign(0.052) TCGA-AF-2690-01 3 73004380 73004380 C T GXYLT2 Silent p.H244H 0.18 TCGA-AF-2690-01 3 98312001 98312001 C T CPOX Silent p.P116P 0.38 TCGA-AF-2690-01 4 103498191 103498191 T G NFKB1 Missense_Mutation p.L189R 0.40 deleterious(0) possibly_damaging(0.673) TCGA-AF-2690-01 5 102364596 102364596 G A PAM Missense_Mutation p.G918R 0.22 tolerated(0.12) probably_damaging(0.999) TCGA-AF-2690-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.33 TCGA-AF-2690-01 5 112175536 112175536 T - APC Frame_Shift_Del p.S1415Rfs*4 0.20 TCGA-AF-2690-01 5 13814764 13814764 C A DNAH5 Nonsense_Mutation p.G2394* 0.21 TCGA-AF-2690-01 5 140166610 140166610 C T PCDHA1 Silent p.A245A 0.17 TCGA-AF-2690-01 5 156968 156968 G A PLEKHG4B Missense_Mutation p.R454H 0.20 tolerated(0.57) possibly_damaging(0.769) TCGA-AF-2690-01 5 35646877 35646877 C A SPEF2 Missense_Mutation p.Q232K 0.36 tolerated(0.22) benign(0.418) TCGA-AF-2690-01 6 107372382 107372382 G T C6orf203 Missense_Mutation p.R227I 0.48 tolerated(0.06) possibly_damaging(0.59) TCGA-AF-2690-01 6 34949617 34949617 G T ANKS1A Nonsense_Mutation p.E196* 0.29 TCGA-AF-2690-01 6 35980079 35980079 G A SLC26A8 Nonsense_Mutation p.R87* 0.23 TCGA-AF-2690-01 7 148947635 148947635 C T ZNF212 Missense_Mutation p.P137L 0.16 deleterious(0) probably_damaging(0.999) TCGA-AF-2690-01 7 4900243 4900243 C T PAPOLB Missense_Mutation p.R399Q 0.10 deleterious(0.03) benign(0.1) TCGA-AF-2690-01 7 54617804 54617804 C T VSTM2A Missense_Mutation p.T192M 0.31 tolerated(0.38) benign(0.002) TCGA-AF-2690-01 7 72742314 72742314 G A FKBP6 5'Flank 0.11 TCGA-AF-2690-01 8 131916213 131916213 C T ADCY8 Silent p.E572E 0.22 TCGA-AF-2690-01 8 144945811 144945811 G A EPPK1 Silent p.S537S 0.10 TCGA-AF-2690-01 8 37595450 37595450 T C ERLIN2 Silent p.L4L 0.42 TCGA-AF-2690-01 8 38947570 38947570 G C ADAM9 Missense_Mutation p.M691I 0.55 tolerated(0.27) benign(0) TCGA-AF-2690-01 8 38947683 38947683 G T ADAM9 Missense_Mutation p.R729I 0.54 deleterious(0.02) possibly_damaging(0.786) TCGA-AF-2690-01 8 64100002 64100002 A C YTHDF3 Missense_Mutation p.E477A 0.20 deleterious(0) possibly_damaging(0.486) TCGA-AF-2690-01 8 97621649 97621649 C A SDC2 Missense_Mutation p.A160E 0.20 deleterious(0) probably_damaging(1) TCGA-AF-2690-01 9 131353883 131353883 G A SPTAN1 Missense_Mutation p.R1045Q 0.08 tolerated(0.14) possibly_damaging(0.742) TCGA-AF-2690-01 9 138667251 138667251 G A KCNT1 Missense_Mutation p.R780Q 0.17 tolerated(0.32) possibly_damaging(0.611) TCGA-AF-2690-01 X 49109621 49109621 C T FOXP3 Missense_Mutation p.R337Q 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-AF-2690-01 X 67944258 67944258 G T STARD8 Missense_Mutation p.K1102N 0.12 deleterious(0) possibly_damaging(0.756) TCGA-AF-2690-01 X 82763884 82763884 C T POU3F4 Silent p.S184S 0.16 TCGA-AF-2693-01 10 105138095 105138095 C T TAF5 Nonsense_Mutation p.R301* 0.18 TCGA-AF-2693-01 10 27687573 27687573 C T PTCHD3 Missense_Mutation p.D652N 0.35 tolerated(0.24) benign(0.127) TCGA-AF-2693-01 10 402301 402301 G A DIP2C Intron 0.21 TCGA-AF-2693-01 10 5020071 5020071 A T AKR1C1 3'UTR 0.30 TCGA-AF-2693-01 10 5020120 5020120 G C AKR1C1 3'UTR 0.27 TCGA-AF-2693-01 10 5020144 5020144 A C AKR1C1 3'UTR 0.24 TCGA-AF-2693-01 10 64948970 64948970 G C JMJD1C Missense_Mutation p.S2176R 0.07 tolerated(0.35) benign(0.001) TCGA-AF-2693-01 11 118771916 118771916 G A BCL9L Nonsense_Mutation p.Q846* 0.55 TCGA-AF-2693-01 11 2154760 2154760 G A IGF2 Missense_Mutation p.P154L 0.30 tolerated(0.53) benign(0) TCGA-AF-2693-01 11 36296289 36296289 G A COMMD9 Missense_Mutation p.P164S 0.24 tolerated(0.09) possibly_damaging(0.622) TCGA-AF-2693-01 11 4703580 4703580 C T OR51E2 Missense_Mutation p.R121H 0.37 deleterious(0) probably_damaging(0.998) TCGA-AF-2693-01 11 68748293 68748293 G A MRGPRD Nonsense_Mutation p.R55* 0.51 TCGA-AF-2693-01 11 7720314 7720314 C T OVCH2 Missense_Mutation p.R303Q 0.37 tolerated(0.69) benign(0.004) TCGA-AF-2693-01 12 108034103 108034103 A G BTBD11 Missense_Mutation p.N918S 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-AF-2693-01 12 112081849 112081849 C T BRAP 3'UTR 0.32 TCGA-AF-2693-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-AF-2693-01 12 123892040 123892040 C T SETD8 Silent p.C283C 0.31 TCGA-AF-2693-01 12 125834441 125834441 G A TMEM132B Missense_Mutation p.E166K 0.34 deleterious(0) probably_damaging(0.999) TCGA-AF-2693-01 12 3147233 3147233 A T TEAD4 Nonsense_Mutation p.K333* 0.27 TCGA-AF-2693-01 12 39299365 39299365 G A CPNE8 5'UTR 0.08 TCGA-AF-2693-01 12 40916634 40916634 T C MUC19 Intron 0.40 TCGA-AF-2693-01 12 6936399 6936399 G C GPR162 3'UTR 0.32 TCGA-AF-2693-01 12 6936407 6936407 G A GPR162 3'UTR 0.35 TCGA-AF-2693-01 13 61084006 61084006 T A TDRD3 Missense_Mutation p.L323H 0.11 deleterious(0) probably_damaging(1) TCGA-AF-2693-01 14 58718854 58718854 G T PSMA3 Missense_Mutation p.R41I 0.18 deleterious(0) possibly_damaging(0.63) TCGA-AF-2693-01 14 77714714 77714714 C T TMEM63C Silent p.G542G 0.32 TCGA-AF-2693-01 15 101938708 101938708 G A PCSK6 Silent p.I298I 0.26 TCGA-AF-2693-01 15 27188386 27188386 C T GABRA5 Missense_Mutation p.T301M 0.38 deleterious(0) probably_damaging(1) TCGA-AF-2693-01 15 34527516 34527516 C T SLC12A6 Splice_Site p.X1076_splice 0.30 TCGA-AF-2693-01 15 49426216 49426216 C T COPS2 Missense_Mutation p.G276R 0.33 deleterious(0.02) probably_damaging(0.91) TCGA-AF-2693-01 15 74494576 74494576 G A STRA6 Silent p.S50S 0.28 TCGA-AF-2693-01 16 1823754 1823754 C T EME2 Missense_Mutation p.A99V 0.40 tolerated(0.1) benign(0.133) TCGA-AF-2693-01 16 27512525 27512525 C T GTF3C1 Missense_Mutation p.G683D 0.31 deleterious(0) probably_damaging(0.994) TCGA-AF-2693-01 16 51173735 51173735 C T SALL1 Missense_Mutation p.D800N 0.05 deleterious(0) benign(0.373) TCGA-AF-2693-01 16 74444464 74444464 C T CLEC18B Missense_Mutation p.S394N 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-AF-2693-01 16 80638362 80638362 G A CDYL2 Missense_Mutation p.L482F 0.22 deleterious(0) probably_damaging(1) TCGA-AF-2693-01 16 84522896 84522896 T C TLDC1 Missense_Mutation p.M173V 0.29 tolerated(0.12) benign(0.001) TCGA-AF-2693-01 16 85689336 85689336 G C GSE1 Missense_Mutation p.D268H 0.07 deleterious(0) unknown(0) TCGA-AF-2693-01 17 27031457 27031457 C T PROCA1 Intron 0.27 TCGA-AF-2693-01 17 48462526 48462526 T C LRRC59 Missense_Mutation p.K210R 0.26 tolerated(0.21) benign(0.006) TCGA-AF-2693-01 17 6616654 6616654 G A SLC13A5 5'UTR 0.08 TCGA-AF-2693-01 17 67079367 67079367 C A ABCA6 Silent p.V1487V 0.19 TCGA-AF-2693-01 17 67153002 67153002 A T ABCA10 Missense_Mutation p.N1142K 0.25 tolerated(1) benign(0) TCGA-AF-2693-01 17 74309925 74309925 C T PRPSAP1 Missense_Mutation p.G277R 0.44 tolerated(0.21) benign(0.16) TCGA-AF-2693-01 17 7579591 7579591 C T TP53 Splice_Site p.X33_splice 0.48 TCGA-AF-2693-01 17 78291028 78291028 A G RNF213 Missense_Mutation p.H951R 0.28 benign(0.362) TCGA-AF-2693-01 19 1497344 1497344 C A REEP6 3'UTR 0.11 TCGA-AF-2693-01 19 18779181 18779181 C T KLHL26 Missense_Mutation p.S325L 0.26 tolerated(0.56) benign(0.009) TCGA-AF-2693-01 19 38780921 38780921 G - SPINT2 Splice_Site p.X185_splice 0.31 TCGA-AF-2693-01 19 40722056 40722056 C T TTC9B 3'UTR 0.24 TCGA-AF-2693-01 19 42735003 42735003 C T GSK3A Silent p.P465P 0.34 TCGA-AF-2693-01 19 48558305 48558305 G T PLA2G4C Missense_Mutation p.T430N 0.25 deleterious(0) probably_damaging(0.999) TCGA-AF-2693-01 19 53669090 53669090 C T ZNF665 Missense_Mutation p.R218H 0.26 tolerated(0.25) benign(0.002) TCGA-AF-2693-01 19 56443518 56443518 G A NLRP13 Missense_Mutation p.R54C 0.31 tolerated(0.08) benign(0.001) TCGA-AF-2693-01 1 111861256 111861256 G T CHIA Missense_Mutation p.A291S 0.30 tolerated(0.16) benign(0.23) TCGA-AF-2693-01 1 152770576 152770576 C T LCE1D Silent p.C102C 0.34 TCGA-AF-2693-01 1 171511137 171511137 G T PRRC2C Missense_Mutation p.R1509L 0.27 unknown(0) TCGA-AF-2693-01 1 179363073 179363073 G A AXDND1 Missense_Mutation p.R300Q 0.36 tolerated(0.45) possibly_damaging(0.857) TCGA-AF-2693-01 1 186106681 186106681 G C HMCN1 Missense_Mutation p.C4545S 0.15 probably_damaging(0.985) TCGA-AF-2693-01 1 196659304 196659304 A C CFH Missense_Mutation p.K424T 0.04 deleterious(0.04) benign(0.025) TCGA-AF-2693-01 1 207014388 207014388 A G IL19 Missense_Mutation p.N173D 0.30 tolerated(0.22) possibly_damaging(0.599) TCGA-AF-2693-01 1 228475488 228475488 C T OBSCN Missense_Mutation p.A3642V 0.36 possibly_damaging(0.811) TCGA-AF-2693-01 1 230372430 230372430 A C GALNT2 Missense_Mutation p.K189T 0.32 deleterious(0.02) possibly_damaging(0.552) TCGA-AF-2693-01 1 237778016 237778016 C T RYR2 Missense_Mutation p.T1863M 0.33 benign(0.001) TCGA-AF-2693-01 1 248403107 248403107 C T OR2M4 Missense_Mutation p.R293C 0.24 tolerated(0.05) benign(0.009) TCGA-AF-2693-01 1 53580678 53580678 G T SLC1A7 Intron 0.17 TCGA-AF-2693-01 20 1115856 1115856 G T PSMF1 Missense_Mutation p.S153I 0.24 tolerated(0.13) benign(0.044) TCGA-AF-2693-01 20 25493584 25493584 C A NINL Silent p.R112R 0.28 TCGA-AF-2693-01 20 34203920 34203920 G A SPAG4 5'UTR 0.27 TCGA-AF-2693-01 20 44444175 44444175 G A UBE2C Intron 0.07 TCGA-AF-2693-01 20 52192707 52192707 C T ZNF217 Missense_Mutation p.V866I 0.21 tolerated(0.25) benign(0.004) TCGA-AF-2693-01 20 60739274 60739274 G A SS18L1 Silent p.E265E 0.07 TCGA-AF-2693-01 21 46875779 46875779 C A COL18A1 Missense_Mutation p.A112D 0.29 unknown(0) TCGA-AF-2693-01 21 47552085 47552085 G A COL6A2 Silent p.P893P 0.28 TCGA-AF-2693-01 22 22985416 22985416 G A GGTLC2 5'Flank 0.27 TCGA-AF-2693-01 22 23437747 23437747 C T GNAZ 5'UTR 0.35 TCGA-AF-2693-01 2 170428603 170428603 A T FASTKD1 5'UTR 0.31 TCGA-AF-2693-01 2 176983949 176983949 C T HOXD10 Missense_Mutation p.T338M 0.09 deleterious(0.01) probably_damaging(0.928) TCGA-AF-2693-01 2 179646942 179646942 T C TTN Missense_Mutation p.Y1126C 0.31 TCGA-AF-2693-01 2 204354499 204354499 T A RAPH1 Missense_Mutation p.K180N 0.12 possibly_damaging(0.632) TCGA-AF-2693-01 2 214228834 214228834 A G SPAG16 Missense_Mutation p.Q266R 0.34 deleterious(0.03) benign(0.002) TCGA-AF-2693-01 2 218713758 218713758 C T TNS1 Silent p.V369V 0.27 TCGA-AF-2693-01 2 234869684 234869684 C T TRPM8 Missense_Mutation p.R543W 0.30 deleterious(0.01) possibly_damaging(0.777) TCGA-AF-2693-01 2 238277613 238277613 G A COL6A3 Missense_Mutation p.P1498L 0.29 benign(0.023) TCGA-AF-2693-01 2 28851975 28851975 C T PLB1 Silent p.F1247F 0.18 TCGA-AF-2693-01 2 32654233 32654233 C T BIRC6 Silent p.L964L 0.21 TCGA-AF-2693-01 2 48844960 48844960 C A GTF2A1L 5'Flank 0.42 TCGA-AF-2693-01 2 97507799 97507799 T C ANKRD23 Missense_Mutation p.K100E 0.14 tolerated(0.44) benign(0.032) TCGA-AF-2693-01 3 126228489 126228489 G A UROC1 Missense_Mutation p.T97M 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-AF-2693-01 3 129252595 129252595 G A RHO 3'UTR 0.48 TCGA-AF-2693-01 3 142455330 142455330 C T TRPC1 Silent p.N94N 0.36 TCGA-AF-2693-01 3 145803115 145803115 C A PLOD2 Intron 0.24 TCGA-AF-2693-01 3 160285846 160285846 C T KPNA4 5'Flank 0.26 TCGA-AF-2693-01 3 172065127 172065127 T A FNDC3B Silent p.A830A 0.22 TCGA-AF-2693-01 3 185783741 185783741 C T ETV5 Silent p.P257P 0.09 TCGA-AF-2693-01 3 51749544 51749544 G A GRM2 Silent p.V585V 0.38 TCGA-AF-2693-01 4 2744248 2744248 C T TNIP2 Splice_Site p.X343_splice 0.21 TCGA-AF-2693-01 4 55948780 55948780 G A KDR Nonsense_Mutation p.R1229* 0.43 TCGA-AF-2693-01 5 112173346 112173346 G A APC Nonsense_Mutation p.W685* 0.41 TCGA-AF-2693-01 5 140231780 140231780 C T PCDHA9 Intron 0.29 TCGA-AF-2693-01 5 140256623 140256623 G A PCDHA12 Silent p.P522P 0.32 TCGA-AF-2693-01 5 140515027 140515027 C T PCDHB5 Missense_Mutation p.A4V 0.31 tolerated_low_confidence(0.15) benign(0.012) TCGA-AF-2693-01 5 140553439 140553439 C T PCDHB7 Silent p.N341N 0.27 TCGA-AF-2693-01 5 140870546 140870546 C T PCDHGC5 Missense_Mutation p.P580L 0.31 deleterious(0.02) benign(0.017) TCGA-AF-2693-01 5 141021104 141021104 A T FCHSD1 Silent p.A678A 0.32 TCGA-AF-2693-01 5 170162792 170162792 G A KCNIP1 Silent p.L222L 0.30 TCGA-AF-2693-01 5 37177738 37177738 G A C5orf42 Missense_Mutation p.S1962L 0.32 tolerated(0.56) benign(0.034) TCGA-AF-2693-01 5 64957892 64957892 G A TRAPPC13 Missense_Mutation p.D305N 0.30 deleterious(0) possibly_damaging(0.86) TCGA-AF-2693-01 5 78111801 78111801 C T ARSB Intron 0.38 TCGA-AF-2693-01 5 90074423 90074423 G A GPR98 Silent p.Q4282Q 0.33 TCGA-AF-2693-01 5 94994411 94994411 C T SPATA9 Silent p.K227K 0.15 TCGA-AF-2693-01 5 95128805 95128805 A T RHOBTB3 Missense_Mutation p.N588I 0.08 tolerated(0.23) benign(0.013) TCGA-AF-2693-01 6 112392771 112392771 A G TUBE1 Silent p.A424A 0.43 TCGA-AF-2693-01 6 43466758 43466758 G C TJAP1 Missense_Mutation p.A7P 0.19 deleterious(0) benign(0.011) TCGA-AF-2693-01 6 96652474 96652474 C G FUT9 3'UTR 0.42 TCGA-AF-2693-01 7 107688432 107688432 G T LAMB4 Missense_Mutation p.T1416K 0.26 tolerated(0.98) benign(0.009) TCGA-AF-2693-01 7 1855715 1855715 G A MAD1L1 Silent p.T716T 0.29 TCGA-AF-2693-01 7 95665046 95665046 C T DYNC1I1 Missense_Mutation p.T466M 0.30 tolerated(0.08) probably_damaging(0.932) TCGA-AF-2693-01 8 113241027 113241027 G T CSMD3 Missense_Mutation p.A3641E 0.25 deleterious(0) possibly_damaging(0.898) TCGA-AF-2693-01 8 113275951 113275951 G T CSMD3 Missense_Mutation p.S3260Y 0.20 tolerated(0.35) probably_damaging(0.961) TCGA-AF-2693-01 8 132051814 132051814 G A ADCY8 Nonsense_Mutation p.Q256* 0.26 TCGA-AF-2693-01 8 143559682 143559682 T A BAI1 Missense_Mutation p.W508R 0.08 deleterious(0.02) possibly_damaging(0.86) TCGA-AF-2693-01 8 48309133 48309133 C T SPIDR Silent p.P241P 0.27 TCGA-AF-2693-01 8 52336226 52336226 G A PXDNL Silent p.Y568Y 0.07 TCGA-AF-2693-01 8 53852612 53852612 G A NPBWR1 Missense_Mutation p.A49T 0.29 deleterious(0.04) possibly_damaging(0.749) TCGA-AF-2693-01 8 68123852 68123852 T A ARFGEF1 Splice_Site p.X1563_splice 0.35 TCGA-AF-2693-01 8 70964378 70964378 G T PRDM14 Silent p.I550I 0.34 TCGA-AF-2693-01 8 92998451 92998451 G A RUNX1T1 Missense_Mutation p.R405W 0.26 deleterious(0.02) benign(0.117) TCGA-AF-2693-01 9 137622201 137622201 G A COL5A1 Silent p.T348T 0.26 TCGA-AF-2693-01 9 141070136 141070136 G A TUBBP5 RNA 0.21 TCGA-AF-2693-01 9 90582504 90582504 C T CDK20 Missense_Mutation p.R305H 0.28 deleterious(0) possibly_damaging(0.902) TCGA-AF-2693-01 9 91150428 91150428 A G NXNL2 Missense_Mutation p.K27E 0.08 deleterious(0.04) probably_damaging(0.997) TCGA-AF-2693-01 9 91616968 91616968 G A S1PR3 Missense_Mutation p.V285M 0.34 tolerated(0.11) benign(0.017) TCGA-AF-2693-01 9 91996163 91996163 C T SEMA4D Silent p.A515A 0.29 TCGA-AF-2693-01 X 12937997 12937997 C A TLR8 Missense_Mutation p.R280S 0.54 tolerated(0.38) benign(0) TCGA-AF-2693-01 X 24225594 24225594 T G ZFX Splice_Site p.X266_splice 0.62 TCGA-AF-3911-01 10 61005476 61005476 A G PHYHIPL 3'UTR 0.50 TCGA-AF-3911-01 10 75139952 75139952 C T ANXA7 Missense_Mutation p.R331H 0.60 deleterious(0.01) benign(0.211) TCGA-AF-3911-01 10 88696650 88696650 A T MMRN2 Silent p.T900T 0.52 TCGA-AF-3911-01 11 18956101 18956101 G A MRGPRX1 Silent p.S77S 0.61 TCGA-AF-3911-01 11 5529988 5529988 G A UBQLN3 Silent p.N267N 0.13 TCGA-AF-3911-01 11 55406715 55406715 C T OR4P4 Silent p.N294N 0.33 TCGA-AF-3911-01 11 55587671 55587671 C A OR5D18 Missense_Mutation p.S189Y 0.30 deleterious(0) probably_damaging(0.995) TCGA-AF-3911-01 11 56185100 56185100 A G OR5R1 Silent p.A203A 0.11 TCGA-AF-3911-01 11 59224449 59224449 C A OR4D6 Missense_Mutation p.H6N 0.25 tolerated(0.32) benign(0.024) TCGA-AF-3911-01 11 59283006 59283006 T G OR4D9 Missense_Mutation p.S207R 0.17 deleterious(0.02) possibly_damaging(0.555) TCGA-AF-3911-01 11 62554107 62554107 A T TAF6L Missense_Mutation p.Q403L 0.48 tolerated(0.26) benign(0.014) TCGA-AF-3911-01 11 86209020 86209020 G A ME3 Silent p.V230V 0.54 TCGA-AF-3911-01 12 132401583 132401583 C T ULK1 Silent p.L720L 0.25 TCGA-AF-3911-01 12 21693480 21693480 C T GYS2 Missense_Mutation p.R558H 0.62 tolerated(0.06) possibly_damaging(0.795) TCGA-AF-3911-01 12 57486326 57486326 C T NAB2 Silent p.A351A 0.24 TCGA-AF-3911-01 13 100637279 100637279 C A ZIC2 Missense_Mutation p.H385Q 0.09 deleterious(0) probably_damaging(0.915) TCGA-AF-3911-01 13 111371641 111371641 C T ING1 Missense_Mutation p.R211W 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-AF-3911-01 13 115090526 115090526 G A CHAMP1 Silent p.T403T 0.10 TCGA-AF-3911-01 13 25745464 25745464 C A AMER2 Silent p.T98T 0.13 TCGA-AF-3911-01 13 36743011 36743011 C T SOHLH2 3'UTR 0.22 TCGA-AF-3911-01 14 104506639 104506639 G A TDRD9 Missense_Mutation p.D1275N 0.41 deleterious(0) probably_damaging(0.991) TCGA-AF-3911-01 14 106236231 106236231 C T IGHG3 Missense_Mutation p.V192M 0.35 tolerated(0.14) benign(0.445) TCGA-AF-3911-01 14 23456463 23456463 C T C14orf93 Silent p.L526L 0.09 TCGA-AF-3911-01 14 55424327 55424327 G A WDHD1 Nonsense_Mutation p.R910* 0.24 TCGA-AF-3911-01 14 79175859 79175859 C A NRXN3 Missense_Mutation p.F134L 0.37 tolerated(0.09) probably_damaging(0.93) TCGA-AF-3911-01 14 94158097 94158097 C T UNC79 Silent p.T2287T 0.46 TCGA-AF-3911-01 15 33023237 33023237 C A GREM1 Missense_Mutation p.R116S 0.76 deleterious(0.03) possibly_damaging(0.862) TCGA-AF-3911-01 15 51773561 51773561 T A DMXL2 Silent p.T1914T 0.37 TCGA-AF-3911-01 16 15225383 15225383 G A RP11-1186N24.5 RNA 0.34 TCGA-AF-3911-01 16 22159513 22159513 A G VWA3A Missense_Mutation p.E957G 0.09 deleterious(0.03) probably_damaging(0.961) TCGA-AF-3911-01 16 2819172 2819172 T C SRRM2 Silent p.S2636S 0.08 TCGA-AF-3911-01 16 30749531 30749531 A G SRCAP Missense_Mutation p.T2724A 0.68 unknown(0) TCGA-AF-3911-01 16 31090499 31090499 G C ZNF646 Missense_Mutation p.D952H 0.26 deleterious(0) possibly_damaging(0.759) TCGA-AF-3911-01 16 3613832 3613832 C T NLRC3 Missense_Mutation p.R416K 0.27 tolerated(0.67) benign(0.002) TCGA-AF-3911-01 16 69369017 69369017 T C COG8 Missense_Mutation p.T274A 0.35 deleterious(0) possibly_damaging(0.771) TCGA-AF-3911-01 16 70531286 70531286 A G COG4 Missense_Mutation p.V440A 0.10 deleterious(0) possibly_damaging(0.492) TCGA-AF-3911-01 16 72993145 72993145 G A ZFHX3 Silent p.H300H 0.15 TCGA-AF-3911-01 17 27577292 27577292 C A CRYBA1 Silent p.V63V 0.30 TCGA-AF-3911-01 17 39684145 39684145 G T KRT19 Missense_Mutation p.Q119K 0.26 tolerated(0.1) possibly_damaging(0.856) TCGA-AF-3911-01 17 40937333 40937333 G A WNK4 Missense_Mutation p.G437S 0.29 deleterious(0) unknown(0) TCGA-AF-3911-01 17 44108830 44108830 G A KANSL1 3'UTR 0.10 TCGA-AF-3911-01 17 4803501 4803501 C A C17orf107 Intron 0.57 TCGA-AF-3911-01 17 61912874 61912874 C T SMARCD2 Silent p.A207A 0.27 TCGA-AF-3911-01 17 68171280 68171280 A G KCNJ2 Missense_Mutation p.K34E 0.26 tolerated(0.12) benign(0.338) TCGA-AF-3911-01 17 7577586 7577586 A T TP53 Missense_Mutation p.I232N 0.66 deleterious(0) probably_damaging(0.984) TCGA-AF-3911-01 17 78013956 78013956 G A CCDC40 Missense_Mutation p.G147S 0.08 tolerated(0.44) benign(0.006) TCGA-AF-3911-01 18 76967010 76967010 C T ATP9B Missense_Mutation p.S343L 0.32 deleterious(0) probably_damaging(0.961) TCGA-AF-3911-01 18 77137300 77137300 G A ATP9B Missense_Mutation p.V1121M 0.17 tolerated(0.06) benign(0.21) TCGA-AF-3911-01 19 10335323 10335323 C T S1PR2 Missense_Mutation p.V87I 0.33 tolerated(1) benign(0.002) TCGA-AF-3911-01 19 20044739 20044739 C G ZNF93 Silent p.S325S 0.33 TCGA-AF-3911-01 19 35793392 35793392 G A MAG Missense_Mutation p.V338I 0.19 tolerated(0.11) benign(0.099) TCGA-AF-3911-01 19 40382671 40382671 C T FCGBP Silent p.A3405A 0.25 TCGA-AF-3911-01 19 40581418 40581418 C A ZNF780A Missense_Mutation p.G312W 0.27 deleterious(0) probably_damaging(0.98) TCGA-AF-3911-01 19 40900074 40900074 G A PRX Silent p.G1395G 0.26 TCGA-AF-3911-01 19 50139085 50139085 A G RRAS Missense_Mutation p.F160L 0.13 tolerated(1) benign(0.104) TCGA-AF-3911-01 19 53885650 53885650 G A ZNF525 3'UTR 0.24 TCGA-AF-3911-01 19 55148218 55148218 C T LILRB1 Silent p.Y616Y 0.56 TCGA-AF-3911-01 19 9362344 9362344 G A OR7E24 Missense_Mutation p.D209N 0.14 tolerated(0.07) possibly_damaging(0.458) TCGA-AF-3911-01 1 160062399 160062399 G A IGSF8 Missense_Mutation p.R467W 0.15 tolerated(0.07) possibly_damaging(0.847) TCGA-AF-3911-01 1 161018646 161018646 C T ARHGAP30 Missense_Mutation p.G722D 0.29 tolerated_low_confidence(0.09) benign(0.118) TCGA-AF-3911-01 1 196964953 196964953 T A CFHR5 Missense_Mutation p.N238K 0.20 tolerated(0.14) benign(0.339) TCGA-AF-3911-01 1 228554814 228554814 G A OBSCN Silent p.P7479P 0.09 TCGA-AF-3911-01 1 33238037 33238037 G A KIAA1522 Missense_Mutation p.G1086D 0.59 tolerated_low_confidence(0.05) possibly_damaging(0.777) TCGA-AF-3911-01 1 36809563 36809563 T A STK40 Missense_Mutation p.E301V 0.28 tolerated(0.07) possibly_damaging(0.577) TCGA-AF-3911-01 1 37319239 37319239 G A GRIK3 Silent p.L397L 0.18 TCGA-AF-3911-01 1 38078339 38078339 G A RSPO1 3'UTR 0.60 TCGA-AF-3911-01 1 45251288 45251288 G T BEST4 Missense_Mutation p.P233T 0.58 deleterious(0) probably_damaging(1) TCGA-AF-3911-01 1 45252330 45252330 G A BEST4 Nonsense_Mutation p.Q96* 0.38 TCGA-AF-3911-01 20 42788584 42788584 G A JPH2 Silent p.A281A 0.23 TCGA-AF-3911-01 20 55206876 55206876 C T TFAP2C Missense_Mutation p.H184Y 0.17 tolerated(0.19) benign(0.322) TCGA-AF-3911-01 20 56139346 56139346 C T PCK1 Silent p.A361A 0.13 TCGA-AF-3911-01 20 57766288 57766288 C T ZNF831 Nonsense_Mutation p.Q72* 0.16 TCGA-AF-3911-01 20 60881203 60881203 C T ADRM1 Intron 0.66 TCGA-AF-3911-01 21 22370903 22370903 T C NCAM2 Missense_Mutation p.Y8H 0.17 tolerated(0.39) unknown(0) TCGA-AF-3911-01 21 34889914 34889914 T C GART Silent p.G568G 0.15 TCGA-AF-3911-01 22 28193679 28193679 A G MN1 Silent p.G951G 0.11 TCGA-AF-3911-01 2 190532125 190532125 C T ASNSD1 Nonsense_Mutation p.R423* 0.31 TCGA-AF-3911-01 2 198365031 198365031 G C HSPE1 5'UTR 0.25 TCGA-AF-3911-01 2 198498520 198498520 C G RFTN2 Missense_Mutation p.E214Q 0.27 tolerated(0.11) probably_damaging(0.941) TCGA-AF-3911-01 2 206480223 206480223 C T PARD3B Missense_Mutation p.R1040W 0.26 tolerated(0.11) possibly_damaging(0.847) TCGA-AF-3911-01 2 210565041 210565041 A T MAP2 Missense_Mutation p.K1521N 0.16 deleterious(0) probably_damaging(0.936) TCGA-AF-3911-01 2 216279566 216279566 C A FN1 Missense_Mutation p.W645C 0.28 deleterious(0) probably_damaging(1) TCGA-AF-3911-01 2 89084385 89084385 C T ANKRD36BP2 RNA 0.30 TCGA-AF-3911-01 3 128757721 128757721 C T EFCC1 Silent p.D546D 0.21 TCGA-AF-3911-01 3 129289746 129289746 G A PLXND1 Silent p.H1211H 0.21 TCGA-AF-3911-01 3 130717162 130717162 C T ATP2C1 Nonsense_Mutation p.R840* 0.13 TCGA-AF-3911-01 3 140401536 140401536 G A TRIM42 Missense_Mutation p.D192N 0.20 tolerated(1) benign(0) TCGA-AF-3911-01 3 170198096 170198096 C A SLC7A14 Missense_Mutation p.A659S 0.22 tolerated(0.25) benign(0.023) TCGA-AF-3911-01 3 38292944 38292944 G A OXSR1 Missense_Mutation p.G476R 0.53 deleterious(0.02) probably_damaging(1) TCGA-AF-3911-01 3 65416381 65416381 C T MAGI1 Missense_Mutation p.M513I 0.23 tolerated(0.18) benign(0.387) TCGA-AF-3911-01 4 108614998 108614998 C T PAPSS1 Missense_Mutation p.A114T 0.50 deleterious(0.01) probably_damaging(0.945) TCGA-AF-3911-01 4 155507478 155507478 C A FGA Missense_Mutation p.G368V 0.41 tolerated_low_confidence(0.07) benign(0.022) TCGA-AF-3911-01 4 169923279 169923279 G A CBR4 Missense_Mutation p.R160C 0.31 deleterious(0) possibly_damaging(0.528) TCGA-AF-3911-01 4 57182015 57182015 G A KIAA1211 Missense_Mutation p.A783T 0.33 tolerated(0.79) possibly_damaging(0.695) TCGA-AF-3911-01 4 57888332 57888332 G T POLR2B Missense_Mutation p.R812L 0.33 deleterious(0) probably_damaging(0.976) TCGA-AF-3911-01 4 65147222 65147223 - A TECRL Frame_Shift_Ins p.L297Pfs*6 0.34 TCGA-AF-3911-01 5 101709135 101709135 C T SLCO6A1 Missense_Mutation p.R694H 0.12 tolerated(0.42) benign(0.155) TCGA-AF-3911-01 5 112170852 112170852 G T APC Nonsense_Mutation p.E650* 0.33 TCGA-AF-3911-01 5 112175246 112175246 C - APC Frame_Shift_Del p.P1319Lfs*2 0.29 TCGA-AF-3911-01 6 110620196 110620196 C G METTL24 Missense_Mutation p.V239L 0.35 tolerated(0.15) benign(0.023) TCGA-AF-3911-01 6 152527397 152527397 G A SYNE1 Missense_Mutation p.A7642V 0.80 benign(0.002) TCGA-AF-3911-01 7 100681278 100681278 A C MUC17 Missense_Mutation p.N2194T 0.21 unknown(0) TCGA-AF-3911-01 7 122338311 122338311 C T RNF133 Missense_Mutation p.R221Q 0.22 deleterious(0.02) possibly_damaging(0.591) TCGA-AF-3911-01 7 133861735 133861735 T G LRGUK Missense_Mutation p.S343A 0.27 tolerated(0.46) benign(0.006) TCGA-AF-3911-01 7 135377152 135377152 C A SLC13A4 Missense_Mutation p.G380V 0.26 tolerated(0.22) benign(0.367) TCGA-AF-3911-01 7 138279227 138279227 T A SVOPL 3'Flank 0.16 TCGA-AF-3911-01 7 20795203 20795203 C G ABCB5 Missense_Mutation p.R1244G 0.07 tolerated(0.08) benign(0.009) TCGA-AF-3911-01 7 21599377 21599377 G C DNAH11 Missense_Mutation p.M283I 0.14 benign(0.037) TCGA-AF-3911-01 7 2954933 2954933 G A CARD11 Missense_Mutation p.P926L 0.10 deleterious(0.03) benign(0.043) TCGA-AF-3911-01 7 6057637 6057637 C G AIMP2 Missense_Mutation p.Q179E 0.74 tolerated(0.14) benign(0.087) TCGA-AF-3911-01 7 93551467 93551467 C G GNG11 Missense_Mutation p.I6M 0.30 tolerated(0.41) benign(0.283) TCGA-AF-3911-01 8 2020512 2020512 C T MYOM2 Missense_Mutation p.T294M 0.82 deleterious(0) probably_damaging(1) TCGA-AF-3911-01 8 27680610 27680610 A C PBK Missense_Mutation p.L89V 0.62 deleterious(0.01) benign(0.434) TCGA-AF-3911-01 8 86572587 86572587 G T REXO1L1P 3'UTR 0.17 TCGA-AF-3911-01 8 87111303 87111303 C T ATP6V0D2 Silent p.D32D 0.18 TCGA-AF-3911-01 9 103323693 103323693 A T TMEFF1 Nonsense_Mutation p.R264* 0.26 TCGA-AF-3911-01 9 108275163 108275163 C T FSD1L Missense_Mutation p.P324L 0.23 deleterious(0.01) possibly_damaging(0.448) TCGA-AF-3911-01 9 124544649 124544649 C T DAB2IP Missense_Mutation p.L1120F 0.62 deleterious(0) probably_damaging(0.999) TCGA-AF-3911-01 9 131331089 131331089 G T SPTAN1 Silent p.V92V 0.52 TCGA-AF-3911-01 9 131607687 131607687 C T CCBL1 5'UTR 0.52 TCGA-AF-3911-01 9 26998023 26998023 C G LRRC19 Missense_Mutation p.E100Q 0.50 tolerated(0.51) benign(0.065) TCGA-AF-3911-01 9 36091281 36091281 C A RECK Silent p.V342V 0.14 TCGA-AF-3911-01 9 95222776 95222776 T C ASPN Silent p.K262K 0.55 TCGA-AF-3911-01 X 119425109 119425109 G A TMEM255A Silent p.H117H 0.32 TCGA-AF-3911-01 X 152226471 152226471 C T PNMA3 Silent p.A353A 0.14 TCGA-AF-3911-01 X 37029684 37029684 C T FAM47C 3'UTR 0.86 TCGA-AF-3911-01 X 77380383 77380383 G A PGK1 Missense_Mutation p.G317S 0.09 deleterious(0) probably_damaging(0.995) TCGA-AF-4110-01 10 105046867 105046867 G T INA Missense_Mutation p.D381Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-AF-4110-01 10 114901049 114901050 - A TCF7L2 Frame_Shift_Ins p.P221Tfs*107 0.20 TCGA-AF-4110-01 10 115338404 115338404 T C HABP2 Missense_Mutation p.V196A 0.07 tolerated(0.63) benign(0.232) TCGA-AF-4110-01 10 115356930 115356930 T C NRAP Missense_Mutation p.K1449R 0.13 tolerated(0.06) benign(0.003) TCGA-AF-4110-01 10 118383592 118383592 A G PNLIPRP2 Silent p.E62E 0.25 TCGA-AF-4110-01 10 129906140 129906140 G A MKI67 Silent p.L1322L 0.29 TCGA-AF-4110-01 10 135111468 135111468 C T TUBGCP2 Missense_Mutation p.A202T 0.11 tolerated(0.37) benign(0.005) TCGA-AF-4110-01 10 16562533 16562533 G A C1QL3 Silent p.L178L 0.10 TCGA-AF-4110-01 10 75550776 75550776 G A ZSWIM8 Missense_Mutation p.A329T 0.27 deleterious(0.03) probably_damaging(0.992) TCGA-AF-4110-01 10 90366726 90366726 T C LIPJ 3'UTR 0.29 TCGA-AF-4110-01 11 123524556 123524556 G A SCN3B 5'UTR 0.35 TCGA-AF-4110-01 11 18735425 18735425 G A IGSF22 Missense_Mutation p.T690M 0.20 deleterious(0.03) probably_damaging(0.918) TCGA-AF-4110-01 11 30034630 30034630 A C KCNA4 5'UTR 0.30 TCGA-AF-4110-01 11 60901542 60901542 G A VPS37C Silent p.L77L 0.30 TCGA-AF-4110-01 11 977106 977106 A G AP2A2 Missense_Mutation p.D162G 0.11 deleterious(0.03) benign(0.31) TCGA-AF-4110-01 12 110221492 110221492 G C TRPV4 Missense_Mutation p.N850K 0.46 tolerated_low_confidence(0.97) benign(0.001) TCGA-AF-4110-01 12 132554068 132554068 G A EP400 Missense_Mutation p.G2968D 0.47 probably_damaging(0.914) TCGA-AF-4110-01 12 21377773 21377773 C T SLCO1B1 Missense_Mutation p.S622L 0.19 tolerated(0.09) benign(0.108) TCGA-AF-4110-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.25 deleterious(0) benign(0.361) TCGA-AF-4110-01 12 47629680 47629680 G A PCED1B Silent p.P278P 0.39 TCGA-AF-4110-01 12 81688687 81688687 C T PPFIA2 Missense_Mutation p.R951H 0.41 deleterious(0.01) probably_damaging(0.996) TCGA-AF-4110-01 13 28893602 28893602 C T FLT1 Missense_Mutation p.V1082M 0.15 deleterious(0) probably_damaging(0.999) TCGA-AF-4110-01 13 36383222 36383222 T A DCLK1 Nonsense_Mutation p.K567* 0.13 TCGA-AF-4110-01 13 88329438 88329438 G C SLITRK5 Missense_Mutation p.A599P 0.29 deleterious(0.02) possibly_damaging(0.707) TCGA-AF-4110-01 14 102368208 102368208 C T PPP2R5C Silent p.V366V 0.13 TCGA-AF-4110-01 14 106621924 106621924 G A IGHV3-16 Silent p.A107A 0.31 TCGA-AF-4110-01 14 24601779 24601779 C T FITM1 Missense_Mutation p.A209V 0.17 deleterious(0.03) possibly_damaging(0.749) TCGA-AF-4110-01 14 47530637 47530637 C T MDGA2 Missense_Mutation p.R447H 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-AF-4110-01 14 47770696 47770696 C T MDGA2 Missense_Mutation p.R113H 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-AF-4110-01 14 90651019 90651019 C T KCNK13 Missense_Mutation p.P300L 0.34 tolerated(0.78) benign(0.007) TCGA-AF-4110-01 14 94088768 94088768 A T UNC79 Missense_Mutation p.E1553V 0.16 deleterious_low_confidence(0.01) benign(0.051) TCGA-AF-4110-01 15 24921004 24921004 G A NPAP1 5'UTR 0.36 TCGA-AF-4110-01 15 24927094 24927094 T C NPAP1 3'UTR 0.30 TCGA-AF-4110-01 15 34040445 34040445 T C RYR3 Missense_Mutation p.V2707A 0.11 benign(0.002) TCGA-AF-4110-01 15 48773887 48773887 C T FBN1 Missense_Mutation p.G1310D 0.34 probably_damaging(0.996) TCGA-AF-4110-01 15 65849211 65849211 A G PTPLAD1 Silent p.E113E 0.41 TCGA-AF-4110-01 16 1263837 1263837 C T CACNA1H Missense_Mutation p.S1612L 0.12 deleterious(0.02) benign(0.124) TCGA-AF-4110-01 16 1484686 1484686 G A CCDC154 Silent p.G627G 0.16 TCGA-AF-4110-01 16 1836592 1836592 G A NUBP2 Missense_Mutation p.G24E 0.31 deleterious(0) probably_damaging(1) TCGA-AF-4110-01 16 31091794 31091794 G A ZNF646 Silent p.L1383L 0.39 TCGA-AF-4110-01 16 75661651 75661651 T C KARS 3'UTR 0.26 TCGA-AF-4110-01 16 86614881 86614881 C T FOXL1 3'UTR 0.18 TCGA-AF-4110-01 16 89346415 89346415 C T ANKRD11 Missense_Mutation p.V2179I 0.47 benign(0.018) TCGA-AF-4110-01 17 17061869 17061869 G T MPRIP Missense_Mutation p.E533D 0.26 deleterious(0.02) possibly_damaging(0.721) TCGA-AF-4110-01 17 60821765 60821765 A T MARCH10 Silent p.P169P 0.33 TCGA-AF-4110-01 17 74733003 74733003 C T SRSF2 Silent p.L80L 0.11 TCGA-AF-4110-01 17 7578194 7578195 - C TP53 Frame_Shift_Ins p.P219Afs*3 0.36 TCGA-AF-4110-01 17 80044289 80044289 G A FASN Silent p.N1191N 0.48 TCGA-AF-4110-01 18 65180784 65180784 A G DSEL Silent p.N364N 0.35 TCGA-AF-4110-01 18 72775977 72775977 C T ZNF407 Silent p.D2100D 0.46 TCGA-AF-4110-01 19 44171781 44171781 C A PLAUR Missense_Mutation p.A40S 0.34 tolerated(0.21) benign(0.083) TCGA-AF-4110-01 19 47858534 47858534 A G DHX34 Missense_Mutation p.N315S 0.32 deleterious(0) probably_damaging(0.999) TCGA-AF-4110-01 19 50212032 50212032 G A CPT1C Missense_Mutation p.C501Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-AF-4110-01 19 56735071 56735071 G A ZSCAN5A Missense_Mutation p.R173C 0.13 tolerated(0.1) benign(0.001) TCGA-AF-4110-01 19 7754160 7754160 A G FCER2 Silent p.G295G 0.33 TCGA-AF-4110-01 1 111060317 111060317 C T KCNA10 Missense_Mutation p.G365R 0.16 deleterious(0) probably_damaging(1) TCGA-AF-4110-01 1 147086225 147086225 G T BCL9 Splice_Site p.X124_splice 0.19 TCGA-AF-4110-01 1 150485845 150485845 C G ECM1 Missense_Mutation p.L536V 0.09 tolerated(0.22) benign(0.128) TCGA-AF-4110-01 1 201123103 201123103 C A TMEM9 5'UTR 0.28 TCGA-AF-4110-01 1 202858154 202858154 G A RABIF Missense_Mutation p.R25C 0.10 deleterious(0) probably_damaging(0.992) TCGA-AF-4110-01 1 205549974 205549974 G A MFSD4 Silent p.T205T 0.25 TCGA-AF-4110-01 1 236749610 236749610 T G HEATR1 Missense_Mutation p.K620Q 0.09 tolerated(0.25) benign(0.041) TCGA-AF-4110-01 1 36939480 36939480 C A CSF3R Missense_Mutation p.A124S 0.17 tolerated(0.36) benign(0.048) TCGA-AF-4110-01 1 43805059 43805059 G A MPL Missense_Mutation p.R170H 0.14 deleterious(0.01) probably_damaging(0.951) TCGA-AF-4110-01 1 90400935 90400935 C A LRRC8D Missense_Mutation p.Q770K 0.37 deleterious(0.04) benign(0.08) TCGA-AF-4110-01 20 34765945 34765945 C T EPB41L1 Silent p.F138F 0.60 TCGA-AF-4110-01 20 3673569 3673569 T C SIGLEC1 Missense_Mutation p.S1240G 0.12 deleterious(0.02) possibly_damaging(0.665) TCGA-AF-4110-01 20 44673751 44673751 C T SLC12A5 Missense_Mutation p.S537L 0.21 deleterious(0.01) benign(0.327) TCGA-AF-4110-01 20 46295083 46295083 C T SULF2 Missense_Mutation p.D576N 0.11 tolerated(0.48) benign(0.011) TCGA-AF-4110-01 21 37505014 37505014 G A CBR3 5'Flank 0.55 TCGA-AF-4110-01 21 47985770 47985770 C T DIP2A Missense_Mutation p.R1437W 0.28 deleterious(0) probably_damaging(0.993) TCGA-AF-4110-01 22 24480686 24480686 C A CABIN1 Missense_Mutation p.P1022Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-AF-4110-01 22 39482450 39482450 A C APOBEC3G Missense_Mutation p.K301T 0.47 tolerated(0.31) benign(0.046) TCGA-AF-4110-01 22 40425642 40425642 G A FAM83F 3'UTR 0.25 TCGA-AF-4110-01 2 128388417 128388417 C T MYO7B Missense_Mutation p.P1598L 0.38 tolerated(0.17) benign(0.001) TCGA-AF-4110-01 2 179495016 179495016 C T TTN Missense_Mutation p.D14745N 0.17 TCGA-AF-4110-01 2 179669343 179669343 C T TTN Silent p.T9T 0.40 TCGA-AF-4110-01 2 179770212 179770212 C T CCDC141 Missense_Mutation p.G370E 0.28 tolerated(0.24) possibly_damaging(0.695) TCGA-AF-4110-01 2 196636411 196636411 C T DNAH7 Silent p.S3802S 0.10 TCGA-AF-4110-01 2 212293151 212293151 T A ERBB4 Missense_Mutation p.S901C 0.28 deleterious(0) probably_damaging(0.94) TCGA-AF-4110-01 2 223783820 223783820 C A ACSL3 Silent p.I235I 0.23 TCGA-AF-4110-01 2 239092718 239092718 C G ILKAP Missense_Mutation p.C190S 0.23 tolerated(0.21) benign(0.088) TCGA-AF-4110-01 2 241988107 241988107 C T SNED1 Silent p.N476N 0.12 TCGA-AF-4110-01 2 27664625 27664625 C T NRBP1 Silent p.F518F 0.21 TCGA-AF-4110-01 2 89416929 89416929 G A IGKV1-17 Silent p.S85S 0.28 TCGA-AF-4110-01 3 130098334 130098334 C T COL6A5 Silent p.T247T 0.18 TCGA-AF-4110-01 3 137981300 137981304 TCTTC - NME9 3'UTR 0.22 TCGA-AF-4110-01 3 14949172 14949172 T C FGD5 Missense_Mutation p.I1097T 0.26 deleterious(0) probably_damaging(0.945) TCGA-AF-4110-01 3 180332698 180332698 G A CCDC39 3'UTR 0.11 TCGA-AF-4110-01 3 47277928 47277928 C T KIF9 Intron 0.42 TCGA-AF-4110-01 3 86028340 86028340 A G CADM2 Missense_Mutation p.T326A 0.18 tolerated(0.39) benign(0.121) TCGA-AF-4110-01 4 138451837 138451837 C T PCDH18 Missense_Mutation p.R469Q 0.23 tolerated(0.06) benign(0.015) TCGA-AF-4110-01 4 55138642 55138642 C T PDGFRA Missense_Mutation p.T440M 0.36 tolerated(1) benign(0.003) TCGA-AF-4110-01 4 88534369 88534369 C A DSPP Missense_Mutation p.T344N 0.19 possibly_damaging(0.865) TCGA-AF-4110-01 5 108203494 108203494 C T FER Nonsense_Mutation p.R170* 0.09 TCGA-AF-4110-01 5 110819926 110819926 T C CAMK4 Missense_Mutation p.M395T 0.29 tolerated_low_confidence(0.13) benign(0.002) TCGA-AF-4110-01 5 112163701 112163701 C T APC Nonsense_Mutation p.Q542* 0.31 TCGA-AF-4110-01 5 112175271 112175271 C A APC Nonsense_Mutation p.S1327* 0.28 TCGA-AF-4110-01 5 125828621 125828621 A G GRAMD3 Silent p.L439L 0.20 TCGA-AF-4110-01 5 148697481 148697481 G A AFAP1L1 Missense_Mutation p.R486Q 0.63 deleterious(0.01) benign(0.015) TCGA-AF-4110-01 5 52097780 52097780 A G PELO 3'UTR 0.50 TCGA-AF-4110-01 5 74984855 74984855 G A POC5 Nonsense_Mutation p.Q371* 0.23 TCGA-AF-4110-01 5 75866404 75866404 G C IQGAP2 Splice_Site p.X102_splice 0.24 TCGA-AF-4110-01 6 160231096 160231096 C A PNLDC1 Missense_Mutation p.H263Q 0.21 tolerated(0.08) probably_damaging(0.912) TCGA-AF-4110-01 6 160668264 160668264 A C SLC22A2 Missense_Mutation p.I303M 0.22 tolerated(1) benign(0.062) TCGA-AF-4110-01 6 27114563 27114563 C T HIST1H2BK Silent p.A5A 0.42 TCGA-AF-4110-01 6 30554454 30554454 C T ABCF1 Missense_Mutation p.T666M 0.07 deleterious(0) probably_damaging(1) TCGA-AF-4110-01 6 39824089 39824089 G A DAAM2 Missense_Mutation p.R4H 0.45 deleterious_low_confidence(0) benign(0.24) TCGA-AF-4110-01 6 44233393 44233393 G A NFKBIE Silent p.A36A 0.22 TCGA-AF-4110-01 6 46793169 46793169 C T MEP1A Silent p.I239I 0.24 TCGA-AF-4110-01 6 76731915 76731915 C G IMPG1 Missense_Mutation p.G195A 0.45 tolerated(0.55) benign(0.005) TCGA-AF-4110-01 7 128358954 128358954 A G FAM71F1 Silent p.T168T 0.28 TCGA-AF-4110-01 7 134719458 134719458 G T AGBL3 Missense_Mutation p.W372C 0.13 deleterious(0) probably_damaging(1) TCGA-AF-4110-01 7 138596010 138596010 C A KIAA1549 Silent p.T1009T 0.28 TCGA-AF-4110-01 7 149423067 149423067 A C KRBA1 Missense_Mutation p.T464P 0.25 tolerated(0.14) benign(0.306) TCGA-AF-4110-01 7 1522333 1522333 G A INTS1 Silent p.S1184S 0.38 TCGA-AF-4110-01 7 91726301 91726301 A G AKAP9 Missense_Mutation p.D3343G 0.13 possibly_damaging(0.547) TCGA-AF-4110-01 7 94034529 94034529 G A COL1A2 Missense_Mutation p.G151R 0.40 unknown(0) TCGA-AF-4110-01 8 142188295 142188295 A G DENND3 Missense_Mutation p.M866V 0.12 tolerated(1) benign(0) TCGA-AF-4110-01 8 30704086 30704086 T G TEX15 Missense_Mutation p.E816D 0.29 tolerated(0.12) possibly_damaging(0.517) TCGA-AF-4110-01 8 33357785 33357785 A G MAK16 3'UTR 0.25 TCGA-AF-4110-01 8 37702575 37702576 - A BRF2 Frame_Shift_Ins p.L232Pfs*21 0.15 TCGA-AF-4110-01 8 55539269 55539269 A G RP1 Missense_Mutation p.S943G 0.10 tolerated(0.08) benign(0.004) TCGA-AF-4110-01 8 89209459 89209459 T C MMP16 Missense_Mutation p.Q70R 0.26 tolerated(0.15) benign(0.147) TCGA-AF-4110-01 9 116931125 116931125 G A COL27A1 Silent p.P430P 0.33 TCGA-AF-4110-01 9 131262506 131262506 C G ODF2 Missense_Mutation p.P821R 0.22 deleterious(0) benign(0.221) TCGA-AF-4110-01 9 139905676 139905676 G A ABCA2 Missense_Mutation p.A1962V 0.15 tolerated(0.4) probably_damaging(0.999) TCGA-AF-4110-01 X 128599877 128599877 G A SMARCA1 Missense_Mutation p.R921C 0.21 deleterious(0.01) probably_damaging(0.961) TCGA-AF-4110-01 X 139865857 139865857 T A CDR1 Missense_Mutation p.R225S 0.59 tolerated(0.76) benign(0.402) TCGA-AF-4110-01 X 99551325 99551325 G A PCDH19 Missense_Mutation p.R1133C 0.56 tolerated_low_confidence(0.1) benign(0.002) TCGA-AF-5654-01 10 106160468 106160468 C A CCDC147 Missense_Mutation p.Q616K 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-AF-5654-01 10 119100490 119100490 C G PDZD8 Splice_Site p.X332_splice 0.40 TCGA-AF-5654-01 10 28260161 28260161 G A ARMC4 Missense_Mutation p.R340C 0.39 deleterious(0.03) benign(0.002) TCGA-AF-5654-01 10 37431046 37431046 G A ANKRD30A Silent p.T351T 0.36 TCGA-AF-5654-01 10 37431115 37431115 C T ANKRD30A Silent p.C374C 0.37 TCGA-AF-5654-01 10 43606913 43606913 T C RET Missense_Mutation p.Y508H 0.25 tolerated(0.51) benign(0.001) TCGA-AF-5654-01 10 50034812 50034812 C A WDFY4 Missense_Mutation p.Q2027K 0.37 tolerated(0.41) possibly_damaging(0.9) TCGA-AF-5654-01 10 51889762 51889762 A G FAM21A Missense_Mutation p.Q1224R 0.10 tolerated(0.27) benign(0.287) TCGA-AF-5654-01 10 61829033 61829033 G A ANK3 Missense_Mutation p.A3869V 0.39 probably_damaging(0.968) TCGA-AF-5654-01 10 70426935 70426935 G A TET1 Missense_Mutation p.R1532Q 0.35 tolerated(0.16) benign(0.052) TCGA-AF-5654-01 10 73491853 73491853 C G CDH23 Silent p.T1280T 0.41 TCGA-AF-5654-01 11 118962859 118962859 T C HMBS Missense_Mutation p.Y213H 0.48 tolerated(0.52) probably_damaging(0.98) TCGA-AF-5654-01 11 128710086 128710086 C T KCNJ1 Missense_Mutation p.R37Q 0.37 tolerated(0.34) benign(0.004) TCGA-AF-5654-01 11 128710105 128710105 G A KCNJ1 Missense_Mutation p.R31C 0.39 tolerated(0.17) benign(0.24) TCGA-AF-5654-01 11 64674883 64674883 C T ATG2A Silent p.S892S 0.52 TCGA-AF-5654-01 11 6655209 6655209 C G DCHS1 Missense_Mutation p.D677H 0.32 deleterious(0) probably_damaging(1) TCGA-AF-5654-01 11 68575066 68575066 C T CPT1A Missense_Mutation p.V108M 0.64 tolerated(0.16) benign(0.032) TCGA-AF-5654-01 11 7441758 7441758 C T SYT9 Silent p.I453I 0.36 TCGA-AF-5654-01 11 76885889 76885889 C T MYO7A Missense_Mutation p.R675C 0.29 deleterious(0) probably_damaging(0.999) TCGA-AF-5654-01 11 9172291 9172291 G A DENND5A Missense_Mutation p.R848C 0.45 deleterious(0) probably_damaging(0.977) TCGA-AF-5654-01 12 117724058 117724058 C T NOS1 Missense_Mutation p.A381T 0.59 deleterious(0.04) benign(0.05) TCGA-AF-5654-01 12 118490150 118490150 G A WSB2 Silent p.I49I 0.25 TCGA-AF-5654-01 12 122386916 122386916 T A WDR66 Missense_Mutation p.N406K 0.49 deleterious(0) possibly_damaging(0.493) TCGA-AF-5654-01 12 124838658 124838658 T C NCOR2 Missense_Mutation p.Y1225C 0.52 probably_damaging(0.999) TCGA-AF-5654-01 12 126137055 126137055 C A TMEM132B Silent p.T656T 0.26 TCGA-AF-5654-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.60 deleterious(0.04) possibly_damaging(0.506) TCGA-AF-5654-01 12 53722892 53722892 C T SP7 Missense_Mutation p.V112M 0.62 deleterious(0.04) benign(0.001) TCGA-AF-5654-01 12 54737081 54737081 G A COPZ1 Missense_Mutation p.G81D 0.28 deleterious(0) probably_damaging(1) TCGA-AF-5654-01 13 20632767 20632767 C T ZMYM2 Missense_Mutation p.A849V 0.36 deleterious(0) probably_damaging(0.996) TCGA-AF-5654-01 13 52515241 52515241 T C ATP7B Missense_Mutation p.T1178A 0.33 deleterious(0) probably_damaging(0.997) TCGA-AF-5654-01 14 100848014 100848014 C T WDR25 Silent p.T251T 0.36 TCGA-AF-5654-01 14 21548835 21548835 C T ARHGEF40 Missense_Mutation p.S797L 0.30 deleterious(0.01) benign(0.01) TCGA-AF-5654-01 14 58909440 58909440 G C KIAA0586 Missense_Mutation p.V196L 0.30 deleterious(0) possibly_damaging(0.477) TCGA-AF-5654-01 14 75409358 75409358 G A PGF 3'UTR 0.41 TCGA-AF-5654-01 15 28459027 28459027 C T HERC2 Missense_Mutation p.R2216H 0.40 possibly_damaging(0.813) TCGA-AF-5654-01 15 49031107 49031107 G A CEP152 Missense_Mutation p.P1491L 0.41 tolerated(1) benign(0.001) TCGA-AF-5654-01 15 52885908 52885908 T C FAM214A Missense_Mutation p.D892G 0.39 deleterious(0) possibly_damaging(0.861) TCGA-AF-5654-01 15 89869960 89869960 G A POLG Missense_Mutation p.P532L 0.19 tolerated(0.07) probably_damaging(0.986) TCGA-AF-5654-01 15 89870445 89870445 C G POLG Silent p.S462S 0.38 TCGA-AF-5654-01 16 16138525 16138525 C T ABCC1 Missense_Mutation p.P343L 0.09 deleterious(0) probably_damaging(0.997) TCGA-AF-5654-01 16 16232299 16232299 G A ABCC1 Silent p.T1457T 0.29 TCGA-AF-5654-01 16 4797375 4797375 C T C16orf71 Nonsense_Mutation p.Q438* 0.35 TCGA-AF-5654-01 16 49525140 49525140 G A ZNF423 3'UTR 0.46 TCGA-AF-5654-01 16 55880487 55880487 C T CES5A Missense_Mutation p.R564Q 0.33 tolerated(0.06) benign(0.028) TCGA-AF-5654-01 16 69375484 69375484 C T NIP7 Missense_Mutation p.P158S 0.35 deleterious(0.02) benign(0.42) TCGA-AF-5654-01 16 77225404 77225404 G A MON1B Missense_Mutation p.A8T 0.42 tolerated_low_confidence(0.64) unknown(0) TCGA-AF-5654-01 16 78011577 78011577 G T VAT1L Missense_Mutation p.M415I 0.28 tolerated_low_confidence(0.17) benign(0) TCGA-AF-5654-01 17 30358443 30358443 C G LRRC37B Missense_Mutation p.Q648E 0.35 deleterious(0.03) possibly_damaging(0.523) TCGA-AF-5654-01 17 3101437 3101437 C T OR1A2 Missense_Mutation p.P209S 0.34 deleterious(0) probably_damaging(1) TCGA-AF-5654-01 17 45384950 45384950 C T ITGB3 Nonsense_Mutation p.R750* 0.44 TCGA-AF-5654-01 17 80446002 80446002 G A NARF Missense_Mutation p.R447H 0.88 tolerated(0.1) benign(0.001) TCGA-AF-5654-01 18 14543293 14543293 G A POTEC 5'Flank 0.29 TCGA-AF-5654-01 18 56964100 56964100 C T CPLX4 Missense_Mutation p.D105N 0.37 deleterious(0.01) possibly_damaging(0.649) TCGA-AF-5654-01 19 10402926 10402926 G A ICAM5 Missense_Mutation p.A297T 0.16 tolerated(0.8) benign(0.001) TCGA-AF-5654-01 19 17608117 17608117 C T SLC27A1 Silent p.R350R 0.40 TCGA-AF-5654-01 19 21239944 21239944 C T ZNF430 Missense_Mutation p.T277I 0.27 tolerated(0.09) benign(0.41) TCGA-AF-5654-01 19 23329018 23329018 C G ZNF730 Missense_Mutation p.T391S 0.40 tolerated(0.15) benign(0.001) TCGA-AF-5654-01 19 4157245 4157245 C T CREB3L3 Missense_Mutation p.P137L 0.21 tolerated(0.27) benign(0.001) TCGA-AF-5654-01 19 41699200 41699200 C T CYP2S1 Silent p.L11L 0.20 TCGA-AF-5654-01 19 42880244 42880244 G A MEGF8 Missense_Mutation p.V2552M 0.24 deleterious(0.03) possibly_damaging(0.507) TCGA-AF-5654-01 19 46095528 46095528 G A GPR4 5'UTR 0.40 TCGA-AF-5654-01 19 501739 501739 G A MADCAM1 Silent p.P246P 0.16 TCGA-AF-5654-01 19 50303389 50303389 C T AP2A1 Silent p.A479A 0.35 TCGA-AF-5654-01 19 53057342 53057342 A G ZNF808 Silent p.R391R 0.23 TCGA-AF-5654-01 19 54625258 54625258 C T PRPF31 Silent p.A86A 0.36 TCGA-AF-5654-01 19 57764473 57764473 A G ZNF805 Missense_Mutation p.T96A 0.25 tolerated(0.11) benign(0.005) TCGA-AF-5654-01 19 9090251 9090251 C T MUC16 Missense_Mutation p.E522K 0.45 unknown(0) TCGA-AF-5654-01 1 145415660 145415660 G A HFE2 Missense_Mutation p.R160H 0.27 tolerated(0.17) benign(0.067) TCGA-AF-5654-01 1 154744734 154744734 G A KCNN3 Missense_Mutation p.R389C 0.47 deleterious(0) possibly_damaging(0.855) TCGA-AF-5654-01 1 16385031 16385031 G A FAM131C Silent p.P248P 0.18 TCGA-AF-5654-01 1 17395536 17395536 A G PADI2 3'UTR 0.08 TCGA-AF-5654-01 1 18703368 18703368 C T IGSF21 Silent p.F392F 0.47 TCGA-AF-5654-01 1 18807457 18807457 C G KLHDC7A 5'UTR 0.46 TCGA-AF-5654-01 1 24143201 24143201 T C HMGCL Silent p.P104P 0.47 TCGA-AF-5654-01 1 245912838 245912838 G A SMYD3 3'Flank 0.43 TCGA-AF-5654-01 1 3415741 3415741 G A MEGF6 Missense_Mutation p.H1019Y 0.26 tolerated(1) benign(0.005) TCGA-AF-5654-01 1 39469957 39469957 G A AKIRIN1 3'UTR 0.29 TCGA-AF-5654-01 1 40125092 40125092 G A NT5C1A Missense_Mutation p.R270W 0.55 deleterious(0) probably_damaging(0.998) TCGA-AF-5654-01 1 53975700 53975700 C A GLIS1 Silent p.G453G 0.39 TCGA-AF-5654-01 1 74507278 74507278 G T LRRIQ3 Missense_Mutation p.A446E 0.36 deleterious(0.02) possibly_damaging(0.776) TCGA-AF-5654-01 1 97981479 97981479 C T DPYD Missense_Mutation p.V515I 0.39 tolerated(0.32) benign(0.001) TCGA-AF-5654-01 1 99422193 99422193 C T LPPR5 Silent p.P114P 0.35 TCGA-AF-5654-01 20 33589110 33589110 C T MYH7B Silent p.G1888G 0.39 TCGA-AF-5654-01 20 60585127 60585127 G A TAF4 Missense_Mutation p.A579V 0.55 benign(0.265) TCGA-AF-5654-01 20 62178671 62178671 C A SRMS Missense_Mutation p.C49F 0.27 tolerated(0.25) benign(0.128) TCGA-AF-5654-01 21 34399549 34399549 G A OLIG2 Missense_Mutation p.A127T 0.29 deleterious(0) probably_damaging(1) TCGA-AF-5654-01 21 37734524 37734524 C T MORC3 Missense_Mutation p.R484W 0.31 deleterious(0) possibly_damaging(0.462) TCGA-AF-5654-01 22 50725604 50725604 G A PLXNB2 Silent p.R566R 0.45 TCGA-AF-5654-01 2 109086275 109086275 T C GCC2 Silent p.L164L 0.59 TCGA-AF-5654-01 2 119915393 119915393 G A C1QL2 Silent p.S151S 0.29 TCGA-AF-5654-01 2 128463917 128463917 C T WDR33 Missense_Mutation p.G1331S 0.47 deleterious_low_confidence(0) unknown(0) TCGA-AF-5654-01 2 132021744 132021744 C T POTEE Missense_Mutation p.R906W 0.20 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-AF-5654-01 2 145162505 145162505 C T ZEB2 Missense_Mutation p.E164K 0.33 tolerated(0.1) benign(0) TCGA-AF-5654-01 2 179596497 179596497 G T TTN Missense_Mutation p.A5702E 0.60 TCGA-AF-5654-01 2 204304071 204304071 G A RAPH1 3'UTR 0.77 TCGA-AF-5654-01 2 209010729 209010729 G A CRYGB Silent p.Y7Y 0.31 TCGA-AF-5654-01 2 21227488 21227488 C A APOB Missense_Mutation p.A3950S 0.51 benign(0.014) TCGA-AF-5654-01 2 214149401 214149401 A C SPAG16 Intron 0.25 TCGA-AF-5654-01 2 222436998 222436998 G A EPHA4 5'UTR 0.36 TCGA-AF-5654-01 2 230411790 230411790 A G DNER Missense_Mutation p.V289A 0.23 tolerated(0.27) benign(0.005) TCGA-AF-5654-01 2 234173560 234173560 A G ATG16L1 Missense_Mutation p.I138V 0.27 tolerated(0.79) benign(0.015) TCGA-AF-5654-01 2 238275460 238275460 C T COL6A3 Silent p.A1790A 0.49 TCGA-AF-5654-01 2 240982374 240982374 A G PRR21 Missense_Mutation p.L9P 0.21 deleterious_low_confidence(0.03) probably_damaging(0.991) TCGA-AF-5654-01 2 43452464 43452465 - G ZFP36L2 Frame_Shift_Ins p.R160Pfs*314 0.40 TCGA-AF-5654-01 2 61021301 61021301 C T PAPOLG Missense_Mutation p.P655L 0.30 tolerated_low_confidence(0.11) benign(0.143) TCGA-AF-5654-01 2 96260179 96260179 C G TRIM43 Missense_Mutation p.H136Q 0.48 tolerated(0.41) benign(0.001) TCGA-AF-5654-01 3 186370469 186370469 G A FETUB 3'UTR 0.44 TCGA-AF-5654-01 3 189507519 189507519 G A TP63 Intron 0.44 TCGA-AF-5654-01 3 33866733 33866733 C T PDCD6IP Nonsense_Mutation p.R173* 0.48 TCGA-AF-5654-01 3 38348005 38348005 A G SLC22A14 Missense_Mutation p.D163G 0.31 tolerated(0.27) benign(0.006) TCGA-AF-5654-01 3 38750990 38750990 G A SCN10A Silent p.N1420N 0.30 TCGA-AF-5654-01 4 153251901 153251901 C A FBXW7 Nonsense_Mutation p.E369* 0.43 TCGA-AF-5654-01 4 153271206 153271206 G C FBXW7 Nonsense_Mutation p.S191* 0.27 TCGA-AF-5654-01 4 156618215 156618215 C T GUCY1A3 Missense_Mutation p.R66W 0.07 deleterious(0) probably_damaging(0.996) TCGA-AF-5654-01 4 169158873 169158873 A G DDX60 Missense_Mutation p.F1413S 0.14 deleterious(0.02) probably_damaging(0.973) TCGA-AF-5654-01 4 183958909 183958909 C T FAM92A1P2 RNA 0.62 TCGA-AF-5654-01 4 25821535 25821535 G A SEL1L3 Missense_Mutation p.L440F 0.37 tolerated(0.17) possibly_damaging(0.536) TCGA-AF-5654-01 4 55958864 55958864 T C KDR Missense_Mutation p.K997E 0.32 tolerated(0.95) probably_damaging(0.992) TCGA-AF-5654-01 4 73986678 73986678 T C ANKRD17 Missense_Mutation p.T1257A 0.55 benign(0.355) TCGA-AF-5654-01 5 112175480 112175481 GA - APC Frame_Shift_Del p.R1399Ffs*9 0.45 TCGA-AF-5654-01 5 132018286 132018286 T C IL4 3'UTR 0.08 TCGA-AF-5654-01 5 140257074 140257074 G A PCDHA12 Missense_Mutation p.G673S 0.45 tolerated_low_confidence(0.18) benign(0.027) TCGA-AF-5654-01 5 140562538 140562538 A G PCDHB16 Missense_Mutation p.E135G 0.08 deleterious_low_confidence(0.02) benign(0.209) TCGA-AF-5654-01 5 164028124 164028124 T C CTC-340A15.2 RNA 0.40 TCGA-AF-5654-01 5 36265126 36265126 C T RANBP3L Missense_Mutation p.V164I 0.38 tolerated(0.32) benign(0.002) TCGA-AF-5654-01 5 37835807 37835807 C A GDNF 5'UTR 0.46 TCGA-AF-5654-01 5 63510221 63510221 C A RNF180 Missense_Mutation p.D356E 0.36 tolerated(0.09) benign(0.01) TCGA-AF-5654-01 6 105609486 105609486 C A POPDC3 Missense_Mutation p.R100L 0.32 deleterious(0) benign(0.436) TCGA-AF-5654-01 6 117645564 117645564 G T ROS1 Missense_Mutation p.P1858T 0.40 tolerated(0.31) benign(0.014) TCGA-AF-5654-01 6 119324168 119324168 C T FAM184A Missense_Mutation p.E662K 0.30 deleterious(0.02) probably_damaging(0.986) TCGA-AF-5654-01 6 151672397 151672397 C A AKAP12 Missense_Mutation p.N957K 0.24 tolerated(0.56) benign(0.033) TCGA-AF-5654-01 6 160206464 160206464 G A TCP1 Silent p.L148L 0.38 TCGA-AF-5654-01 6 161510473 161510473 G A MAP3K4 Silent p.P981P 0.59 TCGA-AF-5654-01 6 28501867 28501867 C T GPX5 Missense_Mutation p.R197C 0.37 deleterious(0) possibly_damaging(0.889) TCGA-AF-5654-01 6 29523787 29523787 G A UBD Missense_Mutation p.T123M 0.30 deleterious(0.03) probably_damaging(0.984) TCGA-AF-5654-01 6 29576386 29576386 C T GABBR1 Missense_Mutation p.V662I 0.40 tolerated(0.5) benign(0.049) TCGA-AF-5654-01 6 37605039 37605039 G A MDGA1 3'UTR 0.40 TCGA-AF-5654-01 6 88763681 88763681 G A SPACA1 Missense_Mutation p.V76I 0.35 deleterious_low_confidence(0.05) possibly_damaging(0.722) TCGA-AF-5654-01 6 90604409 90604409 G T GJA10 Missense_Mutation p.L74F 0.41 deleterious(0.01) probably_damaging(1) TCGA-AF-5654-01 7 103004631 103004631 C T PSMC2 Silent p.G211G 0.22 TCGA-AF-5654-01 7 154002599 154002599 C A DPP6 Intron 0.71 TCGA-AF-5654-01 7 154863299 154863299 C T HTR5A Silent p.R230R 0.57 TCGA-AF-5654-01 7 2962846 2962846 G A CARD11 Nonsense_Mutation p.R688* 0.20 TCGA-AF-5654-01 7 45125190 45125190 C T NACAD Missense_Mutation p.A197T 0.55 tolerated(0.17) benign(0.01) TCGA-AF-5654-01 7 64292097 64292097 A C ZNF138 Silent p.I133I 0.53 TCGA-AF-5654-01 7 6566374 6566374 G T GRID2IP Missense_Mutation p.A204E 0.57 tolerated(0.5) benign(0.044) TCGA-AF-5654-01 7 6805370 6805370 T C RSPH10B2 Missense_Mutation p.W203R 0.33 deleterious(0) possibly_damaging(0.873) TCGA-AF-5654-01 7 74237271 74237271 C T GTF2IRD2 Silent p.S141S 0.76 TCGA-AF-5654-01 7 87037518 87037518 T C ABCB4 Silent p.E1038E 0.09 TCGA-AF-5654-01 8 116599698 116599698 G T TRPS1 Missense_Mutation p.H744N 0.36 tolerated_low_confidence(0.38) benign(0.046) TCGA-AF-5654-01 8 133142093 133142093 C A KCNQ3 Missense_Mutation p.D679Y 0.42 tolerated(0.17) possibly_damaging(0.759) TCGA-AF-5654-01 8 144124588 144124588 C T C8orf31 Missense_Mutation p.T32M 0.27 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-AF-5654-01 8 145662277 145662277 C T TONSL Missense_Mutation p.G585R 0.38 deleterious(0) probably_damaging(1) TCGA-AF-5654-01 8 17731885 17731885 A T FGL1 Missense_Mutation p.S130R 0.39 tolerated(0.19) benign(0.202) TCGA-AF-5654-01 8 21984769 21984769 C T HR Missense_Mutation p.G396S 0.38 tolerated(0.39) benign(0.012) TCGA-AF-5654-01 8 26365183 26365183 G A PNMA2 Silent p.D363D 0.25 TCGA-AF-5654-01 8 27145231 27145231 A G TRIM35 Missense_Mutation p.S440P 0.46 deleterious(0) probably_damaging(0.998) TCGA-AF-5654-01 8 2796204 2796204 G A CSMD1 Missense_Mutation p.S3533L 0.34 probably_damaging(0.996) TCGA-AF-5654-01 8 91643932 91643932 T A TMEM64 Missense_Mutation p.T267S 0.50 tolerated(0.43) benign(0.072) TCGA-AF-5654-01 9 15433600 15433600 G A SNAPC3 Missense_Mutation p.R148Q 0.29 deleterious(0.03) possibly_damaging(0.801) TCGA-AF-5654-01 9 4117899 4117899 C T GLIS3 Missense_Mutation p.D527N 0.51 deleterious(0) probably_damaging(0.996) TCGA-AF-5654-01 9 84603895 84603895 C T SPATA31D1 Silent p.T54T 0.43 TCGA-AF-5654-01 9 84606600 84606600 A T SPATA31D1 Silent p.S405S 0.39 TCGA-AF-5654-01 X 101395951 101395951 G A TCEAL6 Missense_Mutation p.T118M 0.25 tolerated(0.22) possibly_damaging(0.79) TCGA-AF-5654-01 X 105970343 105970343 A T RNF128 Missense_Mutation p.E67V 0.29 deleterious(0.02) benign(0.032) TCGA-AF-5654-01 X 117043745 117043745 G A KLHL13 Silent p.Y298Y 0.22 TCGA-AF-5654-01 X 128615123 128615123 G A SMARCA1 Missense_Mutation p.R753C 0.27 deleterious(0) probably_damaging(0.995) TCGA-AF-5654-01 X 140995660 140995660 A T MAGEC1 Missense_Mutation p.S824C 0.51 tolerated_low_confidence(0.09) unknown(0) TCGA-AF-5654-01 X 1484071 1484071 C T IL3RA Missense_Mutation p.T267M 0.22 deleterious(0.01) possibly_damaging(0.854) TCGA-AF-5654-01 X 153599408 153599408 G A FLNA Missense_Mutation p.T69M 0.24 tolerated(0.1) possibly_damaging(0.835) TCGA-AF-5654-01 X 154157962 154157962 G T F8 Missense_Mutation p.P1368Q 0.28 tolerated(1) benign(0) TCGA-AF-5654-01 X 24766440 24766440 G C POLA1 Missense_Mutation p.E896Q 0.25 deleterious(0.05) possibly_damaging(0.905) TCGA-AF-5654-01 X 34148722 34148722 C T FAM47A Silent p.P558P 0.31 TCGA-AF-5654-01 X 35993862 35993862 C T CXorf22 Missense_Mutation p.L849F 0.53 deleterious(0) probably_damaging(0.999) TCGA-AF-5654-01 X 49020280 49020280 C T MAGIX Intron 0.36 TCGA-AF-5654-01 X 57162355 57162355 C T SPIN2A Missense_Mutation p.G226S 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-AF-5654-01 X 63444779 63444779 T C ASB12 Missense_Mutation p.Y251C 0.40 tolerated(0.09) probably_damaging(0.999) TCGA-AF-5654-01 X 63569894 63569894 C G MTMR8 Silent p.T175T 0.56 TCGA-AF-5654-01 X 69385814 69385814 C T IGBP1 Nonsense_Mutation p.R335* 0.23 TCGA-AF-5654-01 X 8766191 8766199 CTGCAATAT - FAM9A In_Frame_Del p.H122_A125delinsP 0.40 TCGA-AF-6136-01 10 102896554 102896554 G A TLX1 Missense_Mutation p.A293T 0.23 deleterious(0.05) benign(0.011) TCGA-AF-6136-01 10 116048996 116048996 G A VWA2 Missense_Mutation p.V624I 0.43 tolerated(0.24) benign(0.048) TCGA-AF-6136-01 10 117228803 117228803 G A ATRNL1 Silent p.V1206V 0.14 TCGA-AF-6136-01 10 16962055 16962055 G A CUBN Missense_Mutation p.P2243L 0.60 tolerated(0.11) benign(0.223) TCGA-AF-6136-01 10 17363115 17363115 C T ST8SIA6 Missense_Mutation p.R320H 0.28 deleterious(0) probably_damaging(1) TCGA-AF-6136-01 10 17636336 17636336 G A PTPLA Missense_Mutation p.L218F 0.47 deleterious(0) probably_damaging(1) TCGA-AF-6136-01 10 72468469 72468469 G A ADAMTS14 Missense_Mutation p.D269N 0.39 deleterious(0.02) probably_damaging(1) TCGA-AF-6136-01 10 73553196 73553196 C T CDH23 5'Flank 0.19 TCGA-AF-6136-01 10 7780597 7780597 C T ITIH2 Silent p.Y657Y 0.16 TCGA-AF-6136-01 11 101344265 101344265 C A TRPC6 Missense_Mutation p.A662S 0.65 tolerated(0.12) probably_damaging(0.998) TCGA-AF-6136-01 11 102985923 102985923 G A DYNC2H1 Missense_Mutation p.D174N 0.28 possibly_damaging(0.875) TCGA-AF-6136-01 11 108535868 108535868 C T DDX10 5'UTR 0.52 TCGA-AF-6136-01 11 15267726 15267726 C A INSC 3'UTR 0.57 TCGA-AF-6136-01 11 18728525 18728525 C A IGSF22 Silent p.R1172R 0.25 TCGA-AF-6136-01 11 55681759 55681759 T C OR5W2 Silent p.Q100Q 0.69 TCGA-AF-6136-01 11 78775867 78775867 G A TENM4 Missense_Mutation p.R137W 0.41 deleterious_low_confidence(0) possibly_damaging(0.521) TCGA-AF-6136-01 12 107386774 107386774 G A CRY1 Silent p.G542G 0.21 TCGA-AF-6136-01 12 112638601 112638601 A C HECTD4 Missense_Mutation p.V2657G 0.29 benign(0.003) TCGA-AF-6136-01 12 121622677 121622677 C T P2RX7 3'UTR 0.29 TCGA-AF-6136-01 12 121970763 121970763 T C KDM2B Silent p.E293E 0.10 TCGA-AF-6136-01 12 124821373 124821373 G A NCOR2 Missense_Mutation p.S2014L 0.37 possibly_damaging(0.905) TCGA-AF-6136-01 12 130919378 130919378 G A RIMBP2 Silent p.Y701Y 0.12 TCGA-AF-6136-01 12 1755211 1755211 C T WNT5B Silent p.N291N 0.26 TCGA-AF-6136-01 12 49435156 49435156 C T KMT2D Missense_Mutation p.A2133T 0.29 possibly_damaging(0.895) TCGA-AF-6136-01 12 56515808 56515808 G T ZC3H10 3'UTR 0.48 TCGA-AF-6136-01 13 103054007 103054007 A G FGF14 Missense_Mutation p.F8L 0.43 deleterious_low_confidence(0.04) benign(0) TCGA-AF-6136-01 13 111138051 111138051 G T COL4A2 Silent p.L1025L 0.80 TCGA-AF-6136-01 13 28964202 28964202 G A FLT1 Missense_Mutation p.P567L 0.64 deleterious(0) probably_damaging(1) TCGA-AF-6136-01 13 37678497 37678497 C T CSNK1A1L Silent p.T299T 0.62 TCGA-AF-6136-01 13 53250436 53250436 G A SUGT1 Silent p.T265T 0.48 TCGA-AF-6136-01 13 58207478 58207478 C T PCDH17 Silent p.N266N 0.10 TCGA-AF-6136-01 13 67799644 67799644 A G PCDH9 Missense_Mutation p.C977R 0.64 tolerated(0.06) probably_damaging(1) TCGA-AF-6136-01 14 106667794 106667794 G T IGHV3-20 Missense_Mutation p.F46L 0.22 deleterious_low_confidence(0.01) benign(0.308) TCGA-AF-6136-01 14 51446185 51446185 C T TRIM9 Missense_Mutation p.D664N 0.33 tolerated(0.17) benign(0.228) TCGA-AF-6136-01 14 58909585 58909585 C G KIAA0586 Missense_Mutation p.A244G 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-AF-6136-01 14 60756550 60756550 G A PPM1A Missense_Mutation p.V400I 0.10 tolerated(0.43) benign(0.001) TCGA-AF-6136-01 14 60923731 60923731 G A C14orf39 Missense_Mutation p.T421M 0.29 deleterious(0.02) benign(0.003) TCGA-AF-6136-01 14 86088591 86088591 C G FLRT2 Missense_Mutation p.P245A 0.30 tolerated(0.1) benign(0.443) TCGA-AF-6136-01 15 75648559 75648559 G A MAN2C1 Missense_Mutation p.A980V 0.56 deleterious(0.01) possibly_damaging(0.46) TCGA-AF-6136-01 16 10971207 10971207 G A CIITA Missense_Mutation p.R7H 0.19 tolerated_low_confidence(0.52) benign(0) TCGA-AF-6136-01 16 4254628 4254628 C T SRL Silent p.T23T 0.18 TCGA-AF-6136-01 16 70986415 70986415 C T HYDIN Missense_Mutation p.R2147H 0.36 probably_damaging(0.984) TCGA-AF-6136-01 16 71487852 71487852 A C ZNF23 Intron 0.20 TCGA-AF-6136-01 16 79633485 79633485 C A MAF Silent p.A105A 0.38 TCGA-AF-6136-01 16 83817013 83817013 C T CDH13 Silent p.N737N 0.32 TCGA-AF-6136-01 16 88951498 88951498 C T CBFA2T3 Missense_Mutation p.R358H 0.33 tolerated(0.08) benign(0.023) TCGA-AF-6136-01 16 90030715 90030715 C T DEF8 Silent p.C441C 0.47 TCGA-AF-6136-01 17 30621389 30621389 A G RHBDL3 Missense_Mutation p.N199S 0.62 tolerated(1) benign(0.006) TCGA-AF-6136-01 17 55945533 55945533 T A CUEDC1 Nonsense_Mutation p.K338* 0.26 TCGA-AF-6136-01 17 56349193 56349193 C T MPO Missense_Mutation p.G618D 0.60 tolerated(0.17) possibly_damaging(0.753) TCGA-AF-6136-01 17 63554408 63554408 A - AXIN2 Frame_Shift_Del p.W111Gfs*10 0.35 TCGA-AF-6136-01 17 7579406 7579407 - AC TP53 Frame_Shift_Ins p.S94Cfs*30 0.37 TCGA-AF-6136-01 18 48573556 48573556 T A SMAD4 Missense_Mutation p.L47Q 0.07 deleterious(0) probably_damaging(0.998) TCGA-AF-6136-01 18 52921924 52921924 C T TCF4 Missense_Mutation p.R487Q 0.41 tolerated(0.13) possibly_damaging(0.562) TCGA-AF-6136-01 19 14273691 14273691 G A LPHN1 Missense_Mutation p.R313C 0.40 deleterious(0) probably_damaging(0.998) TCGA-AF-6136-01 19 30934550 30934550 C T ZNF536 Silent p.N27N 0.49 TCGA-AF-6136-01 19 30934958 30934958 C T ZNF536 Silent p.C163C 0.20 TCGA-AF-6136-01 19 32851490 32851490 C A ZNF507 Missense_Mutation p.H776N 0.10 deleterious(0) probably_damaging(0.932) TCGA-AF-6136-01 19 44235694 44235694 C T SMG9 3'UTR 0.39 TCGA-AF-6136-01 19 51582707 51582707 G A KLK14 Silent p.I171I 0.24 TCGA-AF-6136-01 19 51770669 51770669 G A SIGLECL1 Silent p.A151A 0.39 TCGA-AF-6136-01 19 52249305 52249305 C T FPR1 Missense_Mutation p.A315T 0.18 deleterious(0.03) benign(0.001) TCGA-AF-6136-01 19 56274427 56274427 G T RFPL4A Missense_Mutation p.W250C 0.17 deleterious(0) possibly_damaging(0.878) TCGA-AF-6136-01 1 110607332 110607332 G T ALX3 Silent p.R157R 0.16 TCGA-AF-6136-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.53 tolerated(0.06) benign(0.006) TCGA-AF-6136-01 1 13802326 13802326 G A LRRC38 Silent p.D291D 0.41 TCGA-AF-6136-01 1 13942502 13942502 G A PDPN 3'UTR 0.11 TCGA-AF-6136-01 1 153657487 153657487 G T NPR1 Missense_Mutation p.R511L 0.45 tolerated(0.05) benign(0.406) TCGA-AF-6136-01 1 156047075 156047075 C T MEX3A Missense_Mutation p.E285K 0.38 deleterious(0.02) probably_damaging(0.981) TCGA-AF-6136-01 1 160616758 160616758 G T SLAMF1 5'UTR 0.30 TCGA-AF-6136-01 1 161680613 161680613 C T FCRLA Missense_Mutation p.T71M 0.09 tolerated(0.29) benign(0.004) TCGA-AF-6136-01 1 177906532 177906532 G T SEC16B Missense_Mutation p.Q774K 0.29 tolerated(0.1) benign(0.007) TCGA-AF-6136-01 1 197411509 197411509 C T CRB1 Intron 0.36 TCGA-AF-6136-01 1 211749326 211749326 G A SLC30A1 Missense_Mutation p.P310S 0.38 deleterious(0.03) benign(0.261) TCGA-AF-6136-01 1 213414659 213414659 G T RPS6KC1 Nonsense_Mutation p.G614* 0.28 TCGA-AF-6136-01 1 214178610 214178610 G A PROX1 Missense_Mutation p.V610I 0.33 deleterious(0) probably_damaging(0.925) TCGA-AF-6136-01 1 237881796 237881796 G A RYR2 Missense_Mutation p.R3510H 0.29 benign(0.002) TCGA-AF-6136-01 1 243385111 243385111 C T CEP170 Missense_Mutation p.R37H 0.43 deleterious(0) probably_damaging(0.948) TCGA-AF-6136-01 1 24668617 24668617 G A GRHL3 Missense_Mutation p.V354I 0.23 tolerated(0.2) benign(0.136) TCGA-AF-6136-01 1 43295868 43295868 T C ERMAP Intron 0.67 TCGA-AF-6136-01 1 70504190 70504190 G A LRRC7 Missense_Mutation p.A857T 0.50 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-AF-6136-01 1 77634963 77634963 C T PIGK Silent p.V119V 0.17 TCGA-AF-6136-01 20 31024910 31024910 A G ASXL1 Silent p.K1465K 0.40 TCGA-AF-6136-01 20 37353300 37353300 C T SLC32A1 5'UTR 0.29 TCGA-AF-6136-01 20 43348542 43348542 G A WISP2 Missense_Mutation p.R22H 0.49 deleterious(0.03) benign(0.051) TCGA-AF-6136-01 20 44003725 44003725 C T TP53TG5 Missense_Mutation p.R241H 0.36 deleterious(0) probably_damaging(0.999) TCGA-AF-6136-01 20 60318802 60318802 G A CDH4 Missense_Mutation p.R118Q 0.41 tolerated(0.21) benign(0.036) TCGA-AF-6136-01 21 31874205 31874205 G A KRTAP19-5 Silent p.F68F 0.29 TCGA-AF-6136-01 21 32007594 32007594 C - KRTAP20-2 Frame_Shift_Del p.Y4* 0.19 TCGA-AF-6136-01 21 39086988 39086988 G A KCNJ6 Missense_Mutation p.R158W 0.29 deleterious(0) probably_damaging(1) TCGA-AF-6136-01 21 45651316 45651316 C T ICOSLG Missense_Mutation p.G237R 0.32 deleterious(0.02) probably_damaging(0.987) TCGA-AF-6136-01 2 114196667 114196667 G A CBWD2 Intron 0.18 TCGA-AF-6136-01 2 1241713 1241713 G A SNTG2 Missense_Mutation p.R258Q 0.29 tolerated(1) benign(0) TCGA-AF-6136-01 2 127809921 127809921 G A BIN1 Silent p.A427A 0.60 TCGA-AF-6136-01 2 130952792 130952792 G A TUBA3E Missense_Mutation p.R79C 0.32 deleterious_low_confidence(0.02) probably_damaging(0.985) TCGA-AF-6136-01 2 160295567 160295567 C T BAZ2B Missense_Mutation p.D285N 0.33 possibly_damaging(0.539) TCGA-AF-6136-01 2 163228444 163228444 G A KCNH7 Silent p.Y1162Y 0.14 TCGA-AF-6136-01 2 1653389 1653389 C T PXDN Silent p.S721S 0.33 TCGA-AF-6136-01 2 179552866 179552866 C A TTN Missense_Mutation p.E10761D 0.22 TCGA-AF-6136-01 2 179611639 179611639 C T TTN Intron 0.23 TCGA-AF-6136-01 2 20649090 20649090 A G RHOB 3'UTR 0.29 TCGA-AF-6136-01 2 220405095 220405095 C T CHPF Silent p.Q446Q 0.33 TCGA-AF-6136-01 2 238296328 238296328 C T COL6A3 Silent p.P403P 0.07 TCGA-AF-6136-01 2 241660347 241660347 C T KIF1A Missense_Mutation p.G1618S 0.11 tolerated(0.66) benign(0.003) TCGA-AF-6136-01 2 29443592 29443592 G A ALK Nonsense_Mutation p.R1209* 0.34 TCGA-AF-6136-01 2 29606622 29606622 A G ALK Missense_Mutation p.F420L 0.42 tolerated(0.87) probably_damaging(0.994) TCGA-AF-6136-01 2 5839107 5839107 C A SOX11 3'UTR 0.30 TCGA-AF-6136-01 2 86756435 86756435 G A RNF103-CHMP3 Silent p.A93A 0.42 TCGA-AF-6136-01 3 133647422 133647422 C T C3orf36 Missense_Mutation p.A76T 0.24 tolerated_low_confidence(0.35) possibly_damaging(0.695) TCGA-AF-6136-01 3 13671426 13671426 G A FBLN2 Silent p.A983A 0.22 TCGA-AF-6136-01 3 146309556 146309556 A C PLSCR5 Missense_Mutation p.I189S 0.26 deleterious(0) possibly_damaging(0.828) TCGA-AF-6136-01 3 160156353 160156353 G C TRIM59 Missense_Mutation p.L207V 0.52 deleterious(0.01) probably_damaging(0.988) TCGA-AF-6136-01 3 167248970 167248970 G A WDR49 Silent p.D365D 0.21 TCGA-AF-6136-01 3 44323518 44323518 G A TOPAZ1 Missense_Mutation p.R1144H 0.26 deleterious(0) probably_damaging(0.985) TCGA-AF-6136-01 3 47452688 47452688 C T PTPN23 Missense_Mutation p.P1134S 0.54 possibly_damaging(0.512) TCGA-AF-6136-01 3 47458698 47458698 C A SCAP Splice_Site p.X991_splice 0.43 TCGA-AF-6136-01 3 77666973 77666973 A G ROBO2 Intron 0.38 TCGA-AF-6136-01 4 125592694 125592694 T G ANKRD50 Missense_Mutation p.T580P 0.44 deleterious(0) probably_damaging(0.999) TCGA-AF-6136-01 4 154507466 154507466 T C KIAA0922 Missense_Mutation p.F473L 0.32 tolerated(0.76) benign(0.02) TCGA-AF-6136-01 4 155507482 155507482 G A FGA Missense_Mutation p.R367C 0.26 tolerated_low_confidence(0.06) benign(0.006) TCGA-AF-6136-01 4 187629345 187629345 G C FAT1 Missense_Mutation p.P546R 0.31 probably_damaging(1) TCGA-AF-6136-01 4 39302015 39302015 C T RFC1 Missense_Mutation p.R853Q 0.33 deleterious(0) probably_damaging(0.994) TCGA-AF-6136-01 4 42145872 42145872 G A BEND4 Silent p.N209N 0.30 TCGA-AF-6136-01 4 76489343 76489343 G A C4orf26 Missense_Mutation p.R44H 0.23 tolerated_low_confidence(0.18) benign(0.001) TCGA-AF-6136-01 4 83601872 83601872 C T SCD5 Missense_Mutation p.R186Q 0.30 tolerated(0.15) benign(0.037) TCGA-AF-6136-01 4 88732594 88732594 C T IBSP Silent p.N162N 0.37 TCGA-AF-6136-01 5 139245191 139245191 C T NRG2 Missense_Mutation p.G378R 0.70 deleterious(0) probably_damaging(1) TCGA-AF-6136-01 5 13944585 13944585 G A DNAH5 5'UTR 0.71 TCGA-AF-6136-01 5 176314628 176314628 C T HK3 Missense_Mutation p.R475H 0.76 deleterious(0) probably_damaging(0.999) TCGA-AF-6136-01 5 38485937 38485937 C A LIFR Silent p.V827V 0.19 TCGA-AF-6136-01 5 38510602 38510602 C T LIFR Missense_Mutation p.E319K 0.30 tolerated(0.37) benign(0.003) TCGA-AF-6136-01 6 137519296 137519296 C T IFNGR1 Missense_Mutation p.V448I 0.21 tolerated(0.38) benign(0.022) TCGA-AF-6136-01 6 157511248 157511248 C T ARID1B Missense_Mutation p.P1256S 0.12 probably_damaging(0.999) TCGA-AF-6136-01 6 161020555 161020555 C A LPA Silent p.R1088R 0.32 TCGA-AF-6136-01 6 165756880 165756880 C A PDE10A Missense_Mutation p.E699D 0.41 deleterious(0.02) benign(0.287) TCGA-AF-6136-01 6 35773597 35773597 C T LHFPL5 Silent p.I50I 0.19 TCGA-AF-6136-01 6 46658608 46658609 - A TDRD6 Frame_Shift_Ins p.N917Kfs*15 0.44 TCGA-AF-6136-01 6 51618063 51618063 G A PKHD1 Silent p.D2962D 0.41 TCGA-AF-6136-01 7 107408041 107408041 G A SLC26A3 Missense_Mutation p.R752C 0.17 deleterious_low_confidence(0.03) benign(0.04) TCGA-AF-6136-01 7 127017375 127017375 G A ZNF800 Nonsense_Mutation p.Q56* 0.33 TCGA-AF-6136-01 7 135099136 135099136 C T CNOT4 Missense_Mutation p.A169T 0.29 deleterious(0) probably_damaging(0.987) TCGA-AF-6136-01 7 147914416 147914416 G A CNTNAP2 Missense_Mutation p.R1016Q 0.45 tolerated(0.18) benign(0.018) TCGA-AF-6136-01 7 150093656 150093656 G A ZNF775 Silent p.T29T 0.23 TCGA-AF-6136-01 7 150768632 150768632 G A SLC4A2 Missense_Mutation p.A711T 0.13 deleterious(0.01) possibly_damaging(0.477) TCGA-AF-6136-01 7 18066925 18066925 C T PRPS1L1 Missense_Mutation p.E161K 0.38 tolerated(0.24) benign(0.014) TCGA-AF-6136-01 7 21655915 21655915 G A DNAH11 Missense_Mutation p.S1367N 0.29 benign(0.025) TCGA-AF-6136-01 7 22767216 22767216 G A IL6 Missense_Mutation p.R58Q 0.41 tolerated(0.21) benign(0.068) TCGA-AF-6136-01 7 37382250 37382250 C T ELMO1 Silent p.P15P 0.38 TCGA-AF-6136-01 7 37901698 37901698 G C NME8 Missense_Mutation p.L113F 0.17 deleterious(0.03) probably_damaging(0.942) TCGA-AF-6136-01 7 42004786 42004786 G A GLI3 Silent p.F1295F 0.14 TCGA-AF-6136-01 7 73929699 73929699 C T GTF2IRD1 Missense_Mutation p.A97V 0.32 tolerated(0.28) benign(0) TCGA-AF-6136-01 8 143746191 143746191 C T JRK RNA 0.31 TCGA-AF-6136-01 8 23708853 23708853 C A STC1 Silent p.L151L 0.66 TCGA-AF-6136-01 9 116136301 116136301 G A HDHD3 Nonsense_Mutation p.Q112* 0.57 TCGA-AF-6136-01 9 21206672 21206672 G A IFNA10 Missense_Mutation p.A142V 0.24 deleterious(0.02) probably_damaging(0.944) TCGA-AF-6136-01 9 33555706 33555706 C A ANKRD18B Missense_Mutation p.P678T 0.28 tolerated(0.4) benign(0.417) TCGA-AF-6136-01 9 37740470 37740470 G A FRMPD1 Missense_Mutation p.G649R 0.40 tolerated(1) benign(0) TCGA-AF-6136-01 9 90254398 90254398 G A DAPK1 Missense_Mutation p.A185T 0.54 deleterious(0) probably_damaging(0.998) TCGA-AF-6136-01 X 114426828 114426828 C T RBMXL3 Missense_Mutation p.R942C 0.15 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-AF-6136-01 X 117815033 117815033 T C DOCK11 Missense_Mutation p.F1895S 0.38 deleterious(0) probably_damaging(1) TCGA-AF-6136-01 X 128691370 128691370 C A OCRL Missense_Mutation p.H103N 0.44 deleterious(0.04) benign(0.028) TCGA-AF-6136-01 X 129154977 129154977 T C BCORL1 Silent p.S1153S 0.38 TCGA-AF-6136-01 X 149639758 149639758 G C MAMLD1 Missense_Mutation p.R613T 0.33 tolerated(0.08) possibly_damaging(0.565) TCGA-AF-6136-01 X 153039023 153039023 G A PLXNB3 Missense_Mutation p.R1068Q 0.32 tolerated(1) benign(0.004) TCGA-AF-6136-01 X 3235844 3235844 C T MXRA5 Missense_Mutation p.V1960I 0.20 tolerated(0.11) benign(0.344) TCGA-AF-6136-01 X 43662574 43662574 C T MAOB Nonsense_Mutation p.W119* 0.35 TCGA-AF-6136-01 X 69282771 69282771 G A OTUD6A Missense_Mutation p.A133T 0.07 tolerated(0.09) benign(0.277) TCGA-AF-6136-01 X 78427340 78427340 G T GPR174 Missense_Mutation p.C279F 0.38 deleterious(0) probably_damaging(1) TCGA-AF-6136-01 X 83129127 83129127 G T CYLC1 Missense_Mutation p.D471Y 0.17 deleterious(0.01) probably_damaging(0.979) TCGA-AF-6136-01 X 91132763 91132763 T A PCDH11X Missense_Mutation p.D508E 0.03 tolerated(0.31) benign(0.291) TCGA-AF-6655-01 10 114710585 114710585 G T TCF7L2 Nonsense_Mutation p.E24* 0.26 TCGA-AF-6655-01 10 116061334 116061334 A G AFAP1L2 Intron 0.21 TCGA-AF-6655-01 10 7801876 7801877 AA - KIN Frame_Shift_Del p.A367Yfs*5 0.22 TCGA-AF-6655-01 11 119045315 119045315 G A NLRX1 Missense_Mutation p.V335I 0.26 tolerated(0.21) benign(0) TCGA-AF-6655-01 11 55735793 55735793 G T OR10AG1 Silent p.P49P 0.07 TCGA-AF-6655-01 11 57466038 57466038 G A ZDHHC5 Missense_Mutation p.R377H 0.20 tolerated(0.57) possibly_damaging(0.642) TCGA-AF-6655-01 11 61673947 61673947 C T RAB3IL1 Silent p.E216E 0.41 TCGA-AF-6655-01 11 62009833 62009833 G - SCGB1D2 Frame_Shift_Del 0.32 TCGA-AF-6655-01 11 8662285 8662285 C T TRIM66 Missense_Mutation p.R399Q 0.21 tolerated(0.08) benign(0.015) TCGA-AF-6655-01 11 92570842 92570842 C T FAT3 Missense_Mutation p.S3413F 0.25 probably_damaging(0.997) TCGA-AF-6655-01 11 93148220 93148220 G A CCDC67 Silent p.S526S 0.32 TCGA-AF-6655-01 12 103232949 103232949 G A PAH 3'UTR 0.28 TCGA-AF-6655-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.36 deleterious(0.04) possibly_damaging(0.506) TCGA-AF-6655-01 12 32481359 32481359 G A BICD1 Missense_Mutation p.R657Q 0.40 tolerated(0.55) probably_damaging(0.989) TCGA-AF-6655-01 12 56705176 56705176 G A CNPY2 Missense_Mutation p.A76V 0.19 tolerated(0.27) benign(0.176) TCGA-AF-6655-01 12 66765671 66765671 G C GRIP1 Missense_Mutation p.H887D 0.24 tolerated(0.21) benign(0.062) TCGA-AF-6655-01 13 27332956 27332956 G T GPR12 3'UTR 0.52 TCGA-AF-6655-01 13 30857794 30857794 G A KATNAL1 Nonsense_Mutation p.Q41* 0.17 TCGA-AF-6655-01 14 69676196 69676196 A G EXD2 Silent p.R3R 0.17 TCGA-AF-6655-01 14 86089507 86089507 C T FLRT2 Missense_Mutation p.A550V 0.19 tolerated(0.08) possibly_damaging(0.762) TCGA-AF-6655-01 14 91947948 91947948 T C SMEK1 Missense_Mutation p.N296S 0.33 deleterious(0) probably_damaging(0.969) TCGA-AF-6655-01 15 69113129 69113129 G A ANP32A 5'UTR 0.37 TCGA-AF-6655-01 16 61687706 61687706 G A CDH8 Missense_Mutation p.P736S 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-AF-6655-01 16 61761039 61761039 C T CDH8 Missense_Mutation p.E499K 0.15 tolerated(0.42) benign(0.225) TCGA-AF-6655-01 16 69600245 69600245 A G NFAT5 Missense_Mutation p.D14G 0.09 probably_damaging(0.98) TCGA-AF-6655-01 17 27380507 27380507 C T PIPOX Missense_Mutation p.T185M 0.21 tolerated(0.05) possibly_damaging(0.447) TCGA-AF-6655-01 17 35614629 35614629 T C ACACA Missense_Mutation p.I608V 0.31 tolerated(0.22) possibly_damaging(0.902) TCGA-AF-6655-01 17 6941499 6941499 G A SLC16A13 Silent p.P124P 0.35 TCGA-AF-6655-01 17 72342636 72342636 C T KIF19 Silent p.R299R 0.26 TCGA-AF-6655-01 17 7578236 7578236 A C TP53 Missense_Mutation p.Y205D 0.35 deleterious(0) probably_damaging(0.948) TCGA-AF-6655-01 18 30926183 30926183 A G CCDC178 Missense_Mutation p.V217A 0.32 deleterious(0) probably_damaging(0.999) TCGA-AF-6655-01 18 51887205 51887205 A G C18orf54 Missense_Mutation p.Y88C 0.53 tolerated(0.13) probably_damaging(0.993) TCGA-AF-6655-01 18 57363880 57363880 C T CCBE1 Missense_Mutation p.E65K 0.37 tolerated(0.15) benign(0.008) TCGA-AF-6655-01 18 64172101 64172101 C T CDH19 Missense_Mutation p.R756H 0.36 tolerated(0.12) benign(0.12) TCGA-AF-6655-01 19 42224098 42224098 G A CEACAM5 Missense_Mutation p.R581H 0.25 tolerated(0.33) benign(0.02) TCGA-AF-6655-01 19 42910417 42910417 G A LIPE Missense_Mutation p.P754L 0.40 deleterious(0.01) probably_damaging(1) TCGA-AF-6655-01 19 43257374 43257374 C G PSG8 3'Flank 0.27 TCGA-AF-6655-01 1 11090290 11090290 C T MASP2 Missense_Mutation p.A414T 0.11 deleterious(0.04) benign(0.185) TCGA-AF-6655-01 1 111146294 111146294 A G KCNA2 Missense_Mutation p.S371P 0.08 deleterious(0) possibly_damaging(0.617) TCGA-AF-6655-01 1 11139840 11139840 C T EXOSC10 Silent p.P559P 0.21 TCGA-AF-6655-01 1 156933315 156933317 GTT - ARHGEF11 In_Frame_Del p.N345del 0.41 TCGA-AF-6655-01 1 161130911 161130911 G A USP21 Missense_Mutation p.G161R 0.31 deleterious_low_confidence(0.02) benign(0.42) TCGA-AF-6655-01 1 174668707 174668707 C T RABGAP1L Silent p.Y648Y 0.39 TCGA-AF-6655-01 1 181732597 181732597 G A CACNA1E Missense_Mutation p.R1582H 0.30 deleterious(0) possibly_damaging(0.812) TCGA-AF-6655-01 1 203025603 203025603 G A PPFIA4 Missense_Mutation p.G230D 0.50 deleterious(0.02) benign(0.008) TCGA-AF-6655-01 1 248551325 248551325 G A OR2T6 Missense_Mutation p.R139Q 0.31 tolerated(0.22) benign(0.037) TCGA-AF-6655-01 1 53108595 53108595 C T FAM159A Silent p.T81T 0.31 TCGA-AF-6655-01 20 24524066 24524066 C T SYNDIG1 Silent p.C111C 0.11 TCGA-AF-6655-01 20 35743618 35743618 G A MROH8 Silent p.T858T 0.11 TCGA-AF-6655-01 20 37547186 37547186 G A PPP1R16B Silent p.P527P 0.06 TCGA-AF-6655-01 20 45130350 45130350 G T ZNF334 Missense_Mutation p.P543Q 0.18 deleterious(0) possibly_damaging(0.756) TCGA-AF-6655-01 20 46294671 46294671 A G SULF2 Missense_Mutation p.V611A 0.30 deleterious(0) probably_damaging(0.994) TCGA-AF-6655-01 20 6022340 6022340 G A LRRN4 Silent p.G517G 0.39 TCGA-AF-6655-01 20 62421202 62421202 C T ZBTB46 Silent p.S303S 0.11 TCGA-AF-6655-01 22 23404121 23404121 A G RTDR1 Missense_Mutation p.I219T 0.13 tolerated(0.25) benign(0.049) TCGA-AF-6655-01 2 128477435 128477435 G A WDR33 Missense_Mutation p.P722S 0.67 deleterious_low_confidence(0.01) unknown(0) TCGA-AF-6655-01 2 179438359 179438359 C A TTN Missense_Mutation p.R24167I 0.54 TCGA-AF-6655-01 2 220432947 220432947 G A OBSL1 Missense_Mutation p.T371M 0.14 deleterious(0) probably_damaging(0.998) TCGA-AF-6655-01 2 223168594 223168594 G A CCDC140 5'UTR 0.63 TCGA-AF-6655-01 2 31598376 31598376 G A XDH Missense_Mutation p.A491V 0.11 tolerated(0.21) benign(0.062) TCGA-AF-6655-01 2 49190767 49190767 C A FSHR Missense_Mutation p.R398M 0.11 deleterious(0) probably_damaging(0.99) TCGA-AF-6655-01 3 121341411 121341411 G T FBXO40 Missense_Mutation p.D379Y 0.51 deleterious(0) probably_damaging(0.999) TCGA-AF-6655-01 3 133583442 133583442 C T RAB6B Missense_Mutation p.D39N 0.51 deleterious(0.01) benign(0.191) TCGA-AF-6655-01 3 140401611 140401611 C T TRIM42 Missense_Mutation p.R217C 0.23 deleterious(0) probably_damaging(0.991) TCGA-AF-6655-01 3 58487486 58487486 A G KCTD6 3'UTR 0.31 TCGA-AF-6655-01 4 15067925 15067925 G A CPEB2 Missense_Mutation p.R1009H 0.29 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-AF-6655-01 4 2916637 2916637 C T ADD1 Silent p.A575A 0.08 TCGA-AF-6655-01 4 39757308 39757308 A G UBE2K Missense_Mutation p.N83S 0.30 deleterious(0) probably_damaging(0.989) TCGA-AF-6655-01 5 112155003 112155003 A - APC Frame_Shift_Del p.A426Lfs*28 0.38 TCGA-AF-6655-01 5 112175626 112175626 A - APC Frame_Shift_Del p.A1446Lfs*27 0.16 TCGA-AF-6655-01 5 137217668 137217668 A T MYOT Missense_Mutation p.R230S 0.15 deleterious(0.03) possibly_damaging(0.776) TCGA-AF-6655-01 5 148627394 148627394 G A ABLIM3 Missense_Mutation p.R534Q 0.59 tolerated(0.06) possibly_damaging(0.862) TCGA-AF-6655-01 5 150683031 150683031 C T SLC36A3 5'UTR 0.50 TCGA-AF-6655-01 5 174192 174192 C T PLEKHG4B Missense_Mutation p.R1105W 0.20 deleterious(0.04) possibly_damaging(0.816) TCGA-AF-6655-01 5 179565173 179565173 C A RASGEF1C 5'UTR 0.29 TCGA-AF-6655-01 5 41008757 41008757 G A MROH2B Missense_Mutation p.R1187W 0.14 tolerated(0.08) probably_damaging(0.981) TCGA-AF-6655-01 5 80550909 80550909 G A CKMT2 Missense_Mutation p.R182Q 0.56 deleterious(0) probably_damaging(1) TCGA-AF-6655-01 5 82817807 82817807 G A VCAN Missense_Mutation p.A1228T 0.49 tolerated(0.53) benign(0.003) TCGA-AF-6655-01 6 142764698 142764698 C T GPR126 3'UTR 0.24 TCGA-AF-6655-01 6 33164314 33164314 T C RXRB Missense_Mutation p.E297G 0.09 tolerated(0.1) possibly_damaging(0.738) TCGA-AF-6655-01 6 33168865 33168865 A G SLC39A7 5'UTR 0.21 TCGA-AF-6655-01 6 47763115 47763115 A G OPN5 Missense_Mutation p.Q191R 0.18 tolerated(0.3) benign(0.381) TCGA-AF-6655-01 6 90097191 90097191 G A RRAGD Silent p.N89N 0.19 TCGA-AF-6655-01 7 124387106 124387106 C T GPR37 Missense_Mutation p.D439N 0.15 tolerated(0.09) possibly_damaging(0.692) TCGA-AF-6655-01 7 128452972 128452972 G A CCDC136 Missense_Mutation p.D918N 0.42 deleterious(0) benign(0.41) TCGA-AF-6655-01 7 150714260 150714260 A C ATG9B Missense_Mutation p.W718G 0.14 deleterious(0) possibly_damaging(0.648) TCGA-AF-6655-01 7 18767220 18767220 G A HDAC9 Silent p.T583T 0.19 TCGA-AF-6655-01 7 45697411 45697411 C T ADCY1 Missense_Mutation p.R412C 0.24 deleterious(0) probably_damaging(0.997) TCGA-AF-6655-01 8 144681282 144681282 C G TIGD5 Missense_Mutation p.F403L 0.70 deleterious(0.01) probably_damaging(0.976) TCGA-AF-6655-01 8 146068363 146068363 G A ZNF7 Missense_Mutation p.R624H 0.51 tolerated(1) benign(0.003) TCGA-AF-6655-01 8 2832109 2832109 G A CSMD1 Silent p.A2868A 0.40 TCGA-AF-6655-01 8 59407186 59407186 T - CYP7A1 Frame_Shift_Del p.A307Qfs*2 0.30 TCGA-AF-6655-01 8 77766282 77766282 C T ZFHX4 Silent p.N2375N 0.55 TCGA-AF-6655-01 8 89081689 89081689 C A MMP16 Intron 0.19 TCGA-AF-6655-01 9 131860552 131860552 A G CRAT Missense_Mutation p.M435T 0.10 deleterious(0.01) benign(0.374) TCGA-AF-6655-01 9 66459879 66459879 G A RP11-262H14.1 RNA 0.12 TCGA-AF-6655-01 X 151909218 151909218 G A CSAG1 3'UTR 0.14 TCGA-AF-6672-01 10 119044524 119044535 CTGTTATCTCAG - PDZD8 In_Frame_Del p.S570_D574delinsY 0.25 TCGA-AF-6672-01 10 37454053 37454053 G T ANKRD30A Missense_Mutation p.K622N 0.25 deleterious(0.05) benign(0.044) TCGA-AF-6672-01 10 43869150 43869150 G A FXYD4 5'UTR 0.62 TCGA-AF-6672-01 11 1466584 1466584 G A BRSK2 Silent p.S337S 0.34 TCGA-AF-6672-01 11 4095835 4095835 C T STIM1 Missense_Mutation p.R299W 0.22 deleterious(0) probably_damaging(0.952) TCGA-AF-6672-01 11 48328541 48328541 A G OR4S1 Missense_Mutation p.Y256C 0.39 deleterious(0) probably_damaging(0.999) TCGA-AF-6672-01 11 6789691 6789691 G A OR2AG2 Silent p.L166L 0.29 TCGA-AF-6672-01 11 95825623 95825623 C A MAML2 Silent p.G524G 0.34 TCGA-AF-6672-01 12 111729259 111729259 C T CUX2 Silent p.D113D 0.38 TCGA-AF-6672-01 12 125834830 125834830 C T TMEM132B Silent p.D295D 0.30 TCGA-AF-6672-01 12 133294357 133294357 C T PGAM5 Silent p.P186P 0.49 TCGA-AF-6672-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.67 deleterious(0) possibly_damaging(0.479) TCGA-AF-6672-01 12 40013006 40013006 T G ABCD2 Missense_Mutation p.K138Q 0.58 deleterious(0.03) possibly_damaging(0.525) TCGA-AF-6672-01 13 107822990 107822990 C G FAM155A Missense_Mutation p.R411T 0.39 deleterious(0) probably_damaging(0.99) TCGA-AF-6672-01 13 111896589 111896589 G A ARHGEF7 Missense_Mutation p.E321K 0.42 deleterious(0.03) benign(0.303) TCGA-AF-6672-01 13 49684507 49684507 T A FNDC3A Intron 0.03 TCGA-AF-6672-01 13 92003474 92003474 T G MIR17HG RNA 0.22 TCGA-AF-6672-01 15 101109902 101109902 C T LINS Missense_Mutation p.M605I 0.31 tolerated(0.29) benign(0.005) TCGA-AF-6672-01 15 37329088 37329088 C T MEIS2 Missense_Mutation p.R276H 0.34 tolerated(0.08) benign(0.03) TCGA-AF-6672-01 15 40751659 40751659 C T BAHD1 Silent p.G332G 0.31 TCGA-AF-6672-01 15 43572000 43572000 C T TGM7 Missense_Mutation p.E501K 0.58 tolerated(0.91) benign(0.005) TCGA-AF-6672-01 15 85165478 85165478 G A ZSCAN2 3'UTR 0.10 TCGA-AF-6672-01 15 91542927 91542927 C T VPS33B Missense_Mutation p.R585Q 0.35 tolerated(0.07) probably_damaging(0.999) TCGA-AF-6672-01 17 1417206 1417206 G T INPP5K Missense_Mutation p.L38M 0.21 deleterious(0.01) probably_damaging(0.966) TCGA-AF-6672-01 17 4857059 4857059 G A ENO3 Silent p.A121A 0.12 TCGA-AF-6672-01 17 73487781 73487781 C T KIAA0195 Nonsense_Mutation p.R466* 0.39 TCGA-AF-6672-01 17 7577547 7577547 C T TP53 Missense_Mutation p.G245D 0.23 deleterious(0) probably_damaging(1) TCGA-AF-6672-01 17 7578266 7578266 T A TP53 Missense_Mutation p.I195F 0.38 deleterious(0) probably_damaging(1) TCGA-AF-6672-01 18 3135700 3135700 C T MYOM1 Missense_Mutation p.R685Q 0.15 tolerated(0.62) possibly_damaging(0.668) TCGA-AF-6672-01 18 48593473 48593473 T A SMAD4 Missense_Mutation p.F408L 0.59 deleterious(0.01) probably_damaging(1) TCGA-AF-6672-01 18 50683828 50683828 C T DCC Missense_Mutation p.A455V 0.56 tolerated(0.12) benign(0.012) TCGA-AF-6672-01 19 17994774 17994774 G A SLC5A5 Missense_Mutation p.R482H 0.20 tolerated(0.17) benign(0.001) TCGA-AF-6672-01 19 44981815 44981815 G T ZNF180 Missense_Mutation p.H295N 0.49 tolerated(0.08) benign(0.146) TCGA-AF-6672-01 19 46094082 46094082 G T GPR4 Missense_Mutation p.S348Y 0.53 deleterious(0.04) benign(0.039) TCGA-AF-6672-01 19 463968 463968 G A ODF3L2 Missense_Mutation p.T249I 0.48 deleterious(0.04) probably_damaging(0.993) TCGA-AF-6672-01 19 54966244 54966244 C T LENG8 Missense_Mutation p.P265L 0.30 deleterious(0.02) possibly_damaging(0.57) TCGA-AF-6672-01 19 58597626 58597626 C A ZSCAN18 Missense_Mutation p.Q307H 0.22 deleterious(0) probably_damaging(0.997) TCGA-AF-6672-01 1 109270590 109270590 G A FNDC7 Silent p.S424S 0.50 TCGA-AF-6672-01 1 110201532 110201532 G T GSTM4 Splice_Site p.X152_splice 0.28 TCGA-AF-6672-01 1 115229401 115229413 GAAAATCAGGCAC - AMPD1 Frame_Shift_Del p.V145Rfs*60 0.46 TCGA-AF-6672-01 1 12837469 12837469 G T PRAMEF12 Silent p.L393L 0.44 TCGA-AF-6672-01 1 13839913 13839913 C T LRRC38 Missense_Mutation p.R59H 0.54 deleterious(0.02) probably_damaging(0.939) TCGA-AF-6672-01 1 144952096 144952096 T C PDE4DIP Intron 0.18 TCGA-AF-6672-01 1 159505349 159505349 C T OR10J5 Missense_Mutation p.G150D 0.20 tolerated(0.21) benign(0.033) TCGA-AF-6672-01 1 17083483 17083483 T C MST1L RNA 0.36 TCGA-AF-6672-01 1 173455445 173455445 G A PRDX6 Missense_Mutation p.A151T 0.52 deleterious(0.01) possibly_damaging(0.58) TCGA-AF-6672-01 1 196392232 196392232 G T KCNT2 Missense_Mutation p.A378D 0.04 deleterious(0) probably_damaging(0.998) TCGA-AF-6672-01 1 197168857 197168857 G A ZBTB41 Silent p.S249S 0.35 TCGA-AF-6672-01 1 31440127 31440127 T C PUM1 Missense_Mutation p.Y559C 0.40 deleterious(0) possibly_damaging(0.798) TCGA-AF-6672-01 1 91781507 91781507 G A HFM1 Missense_Mutation p.T1002M 0.23 tolerated(0.41) benign(0.017) TCGA-AF-6672-01 1 94344724 94344724 C A DNTTIP2 5'UTR 0.18 TCGA-AF-6672-01 20 13971154 13971154 C G SEL1L2 Missense_Mutation p.E9D 0.19 tolerated_low_confidence(0.95) benign(0.099) TCGA-AF-6672-01 20 20226845 20226846 - T C20orf26 Frame_Shift_Ins p.L717Ffs*8 0.15 TCGA-AF-6672-01 20 3007801 3007801 G A PTPRA Silent p.R581R 0.49 TCGA-AF-6672-01 20 31660530 31660530 G A BPIFB3 Silent p.L444L 0.07 TCGA-AF-6672-01 20 49626324 49626324 T C KCNG1 Silent p.E184E 0.12 TCGA-AF-6672-01 21 11047485 11047485 C G BAGE2 RNA 0.08 TCGA-AF-6672-01 21 34932619 34932619 A T SON Intron 0.62 TCGA-AF-6672-01 22 32108222 32108222 G A PRR14L Missense_Mutation p.S1868F 0.32 deleterious(0) probably_damaging(0.997) TCGA-AF-6672-01 22 36587369 36587369 A T APOL4 Missense_Mutation p.N269K 0.21 tolerated(0.89) possibly_damaging(0.558) TCGA-AF-6672-01 22 44489860 44489860 C T PARVB Silent p.P88P 0.53 TCGA-AF-6672-01 2 116534842 116534842 A T DPP10 Missense_Mutation p.K431M 0.11 deleterious(0.03) benign(0.225) TCGA-AF-6672-01 2 141643869 141643869 G C LRP1B Missense_Mutation p.H1268D 0.48 benign(0.227) TCGA-AF-6672-01 2 152359931 152359931 T C NEB Missense_Mutation p.T7923A 0.46 possibly_damaging(0.448) TCGA-AF-6672-01 2 152406166 152406166 C T NEB Missense_Mutation p.R6678H 0.33 possibly_damaging(0.788) TCGA-AF-6672-01 2 164466675 164466675 A T FIGN Missense_Mutation p.V556D 0.22 deleterious(0) probably_damaging(0.977) TCGA-AF-6672-01 2 201725879 201725879 C G CLK1 Intron 0.32 TCGA-AF-6672-01 2 21238336 21238336 G A APOB Silent p.L1138L 0.62 TCGA-AF-6672-01 2 233321912 233321912 C T ALPI Silent p.A176A 0.25 TCGA-AF-6672-01 2 38978475 38978475 T C SRSF7 5'UTR 0.40 TCGA-AF-6672-01 2 79386550 79386550 A T REG3A 5'UTR 0.19 TCGA-AF-6672-01 3 12046022 12046022 C G SYN2 RNA 0.38 TCGA-AF-6672-01 3 134911606 134911606 C T EPHB1 Missense_Mutation p.R691W 0.37 deleterious(0.02) possibly_damaging(0.893) TCGA-AF-6672-01 3 13542268 13542268 G A HDAC11 Silent p.A156A 0.33 TCGA-AF-6672-01 3 1415428 1415428 T A CNTN6 Missense_Mutation p.W643R 0.09 deleterious(0) probably_damaging(0.974) TCGA-AF-6672-01 3 1415440 1415440 G T CNTN6 Missense_Mutation p.A647S 0.11 tolerated(0.89) benign(0.002) TCGA-AF-6672-01 3 157839989 157839989 T A RSRC1 Missense_Mutation p.S32R 0.39 deleterious_low_confidence(0) unknown(0) TCGA-AF-6672-01 3 77651633 77651633 G C ROBO2 Missense_Mutation p.G1059R 0.35 tolerated(0.27) probably_damaging(0.953) TCGA-AF-6672-01 4 15707179 15707179 C T BST1 Missense_Mutation p.A77V 0.16 tolerated(0.64) benign(0.001) TCGA-AF-6672-01 4 5827225 5827225 T G CRMP1 Missense_Mutation p.L655F 0.66 deleterious(0.01) probably_damaging(0.999) TCGA-AF-6672-01 4 5827227 5827227 A T CRMP1 Missense_Mutation p.L655I 0.65 tolerated(0.13) probably_damaging(0.996) TCGA-AF-6672-01 4 68795672 68795672 A T TMPRSS11A Missense_Mutation p.I139N 0.47 tolerated(0.06) benign(0.022) TCGA-AF-6672-01 4 7715969 7715969 C T SORCS2 Silent p.G664G 0.23 TCGA-AF-6672-01 4 79158685 79158685 G A FRAS1 Missense_Mutation p.D44N 0.36 possibly_damaging(0.626) TCGA-AF-6672-01 4 87731014 87731014 C G PTPN13 Missense_Mutation p.I2397M 0.12 deleterious(0) probably_damaging(0.999) TCGA-AF-6672-01 5 10227710 10227710 C T FAM173B Missense_Mutation p.R182Q 0.08 tolerated(0.14) possibly_damaging(0.846) TCGA-AF-6672-01 5 172113859 172113859 A G NEURL1B Silent p.R533R 0.09 TCGA-AF-6672-01 5 34830838 34830838 A G RAI14 Missense_Mutation p.T974A 0.21 tolerated(0.11) possibly_damaging(0.891) TCGA-AF-6672-01 6 144269265 144269265 C T PLAGL1 Silent p.T3T 0.24 TCGA-AF-6672-01 6 147631344 147631344 C G STXBP5 Missense_Mutation p.L348V 0.25 tolerated(0.57) benign(0.088) TCGA-AF-6672-01 6 152737559 152737559 G A SYNE1 Nonsense_Mutation p.R2005* 0.55 TCGA-AF-6672-01 6 158994551 158994552 - A TMEM181 Frame_Shift_Ins p.R174Kfs*4 0.14 TCGA-AF-6672-01 6 160501218 160501218 A G IGF2R Missense_Mutation p.E1915G 0.09 tolerated(0.16) possibly_damaging(0.45) TCGA-AF-6672-01 6 24806524 24806524 T C FAM65B 3'UTR 0.31 TCGA-AF-6672-01 6 28297345 28297345 C T ZSCAN31 Missense_Mutation p.R39Q 0.11 deleterious(0) benign(0.328) TCGA-AF-6672-01 6 72960958 72960958 C T RIMS1 Missense_Mutation p.P862L 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-AF-6672-01 7 104749520 104749520 C T KMT2E Silent p.A1200A 0.23 TCGA-AF-6672-01 7 114562652 114562652 A G MDFIC Missense_Mutation p.R61G 0.33 deleterious_low_confidence(0) benign(0.291) TCGA-AF-6672-01 7 121624099 121624099 C T PTPRZ1 Nonsense_Mutation p.R286* 0.56 TCGA-AF-6672-01 7 158534248 158534248 G T ESYT2 Missense_Mutation p.Q739K 0.12 tolerated(0.29) possibly_damaging(0.856) TCGA-AF-6672-01 7 33380540 33380540 C T BBS9 Silent p.D410D 0.47 TCGA-AF-6672-01 7 57529487 57529487 A G ZNF716 Silent p.E440E 0.08 TCGA-AF-6672-01 7 80546094 80546094 C T SEMA3C Missense_Mutation p.A2T 0.10 tolerated_low_confidence(0.29) benign(0.001) TCGA-AF-6672-01 7 99801743 99801743 C G STAG3 Missense_Mutation p.Q934E 0.35 deleterious(0.05) possibly_damaging(0.508) TCGA-AF-6672-01 8 131792656 131792656 C T ADCY8 Missense_Mutation p.D1246N 0.47 deleterious_low_confidence(0.01) benign(0.001) TCGA-AF-6672-01 8 133899152 133899152 G C TG Missense_Mutation p.G512A 0.17 tolerated(0.11) benign(0.345) TCGA-AF-6672-01 8 142175325 142175325 G A DENND3 Missense_Mutation p.R417Q 0.05 deleterious(0) probably_damaging(1) TCGA-AF-6672-01 8 3015448 3015448 C T CSMD1 Missense_Mutation p.R1962H 0.56 probably_damaging(0.995) TCGA-AF-6672-01 8 95511712 95511712 C T KIAA1429 Missense_Mutation p.A1374T 0.27 deleterious(0.01) benign(0.167) TCGA-AF-6672-01 9 121980 121980 T C CBWD1 Silent p.T354T 0.17 TCGA-AF-6672-01 9 18777556 18777556 G A ADAMTSL1 Missense_Mutation p.R1110H 0.30 deleterious(0.03) benign(0.009) TCGA-AF-6672-01 9 79120751 79120751 T - GCNT1 3'UTR 0.09 TCGA-AF-6672-01 9 84530583 84530583 T C SPATA31D5P RNA 0.29 TCGA-AF-6672-01 X 129271672 129271672 T C AIFM1 Intron 0.78 TCGA-AF-6672-01 X 37312702 37312702 G A PRRG1 Missense_Mutation p.R162H 0.38 tolerated(0.06) possibly_damaging(0.739) TCGA-AF-6672-01 X 47775003 47775003 T C ZNF81 Missense_Mutation p.Y320H 0.83 tolerated(1) benign(0.09) TCGA-AF-6672-01 X 70339907 70339907 C G MED12 Missense_Mutation p.A147G 0.41 probably_damaging(0.969) TCGA-AF-6672-01 X 91133863 91133863 A C PCDH11X Missense_Mutation p.K875T 0.42 tolerated(0.14) benign(0.081) TCGA-AF-A56K-01 10 104229833 104229833 G A TMEM180 Splice_Site p.X84_splice 0.14 TCGA-AF-A56K-01 10 135369193 135369193 C A SYCE1 Missense_Mutation p.E246D 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-AF-A56K-01 10 45799046 45799046 G A OR13A1 Silent p.Y275Y 0.07 TCGA-AF-A56K-01 10 60560008 60560008 C T BICC1 Silent p.L594L 0.44 TCGA-AF-A56K-01 11 119050539 119050539 C T NLRX1 Silent p.G603G 0.08 TCGA-AF-A56K-01 11 22363193 22363193 G A SLC17A6 Missense_Mutation p.R69H 0.55 deleterious(0) possibly_damaging(0.772) TCGA-AF-A56K-01 11 32720862 32720862 G T CCDC73 Missense_Mutation p.Q109K 0.31 tolerated(0.09) benign(0.126) TCGA-AF-A56K-01 11 64329505 64329505 G T SLC22A11 Missense_Mutation p.C176F 0.06 tolerated(0.08) possibly_damaging(0.866) TCGA-AF-A56K-01 11 73067226 73067226 C A ARHGEF17 Missense_Mutation p.L1224M 0.14 deleterious(0) probably_damaging(0.999) TCGA-AF-A56K-01 11 77387952 77387952 G A RSF1 Nonsense_Mutation p.R1076* 0.42 TCGA-AF-A56K-01 11 77531741 77531741 G A RSF1 Missense_Mutation p.A7V 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-AF-A56K-01 11 8732702 8732702 G C ST5 Missense_Mutation p.A750G 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-AF-A56K-01 12 119772964 119772964 A C CCDC60 5'UTR 0.25 TCGA-AF-A56K-01 12 26383688 26383688 G T SSPN Silent p.V137V 0.18 TCGA-AF-A56K-01 12 33559944 33559944 C T SYT10 Missense_Mutation p.R286H 0.18 deleterious(0.03) benign(0.035) TCGA-AF-A56K-01 12 55794376 55794376 C A OR6C65 Missense_Mutation p.Q22K 0.18 tolerated_low_confidence(0.14) benign(0.005) TCGA-AF-A56K-01 12 7640261 7640261 C A CD163 Nonsense_Mutation p.E582* 0.21 TCGA-AF-A56K-01 12 8201311 8201311 G A FOXJ2 Missense_Mutation p.C415Y 0.17 tolerated(1) probably_damaging(0.992) TCGA-AF-A56K-01 12 93803447 93803448 - AAAAT UBE2N 3'UTR 0.14 TCGA-AF-A56K-01 13 23915281 23915281 C T SACS Missense_Mutation p.D912N 0.12 benign(0.004) TCGA-AF-A56K-01 13 28752067 28752067 C G PAN3 Missense_Mutation p.R229G 0.20 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-AF-A56K-01 13 36748881 36748881 A G SOHLH2 Missense_Mutation p.I333T 0.17 deleterious(0.04) benign(0.08) TCGA-AF-A56K-01 13 86369596 86369596 G A SLITRK6 Missense_Mutation p.R350C 0.10 deleterious(0) benign(0.016) TCGA-AF-A56K-01 14 64532329 64532329 C T SYNE2 Silent p.C3464C 0.51 TCGA-AF-A56K-01 14 73716789 73716789 C A PAPLN Silent p.G144G 0.34 TCGA-AF-A56K-01 14 75537651 75537651 T C ZC2HC1C Silent p.F125F 0.19 TCGA-AF-A56K-01 14 80669084 80669084 C A DIO2 Missense_Mutation p.W293L 0.15 tolerated(0.07) possibly_damaging(0.796) TCGA-AF-A56K-01 14 94395253 94395253 G A FAM181A Missense_Mutation p.V270I 0.72 deleterious(0.05) benign(0.016) TCGA-AF-A56K-01 15 66210369 66210369 G A MEGF11 Missense_Mutation p.T674I 0.19 deleterious(0.01) benign(0.314) TCGA-AF-A56K-01 15 89392845 89392845 G A ACAN Missense_Mutation p.V637I 0.22 tolerated(0.07) unknown(0) TCGA-AF-A56K-01 15 98512350 98512350 T A ARRDC4 Intron 0.24 TCGA-AF-A56K-01 16 1840490 1840490 C A IGFALS 3'UTR 0.29 TCGA-AF-A56K-01 16 20380840 20380840 G A PDILT Missense_Mutation p.R364C 0.12 deleterious(0.03) possibly_damaging(0.72) TCGA-AF-A56K-01 16 46934669 46934669 C T GPT2 Missense_Mutation p.R137W 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-AF-A56K-01 16 58610393 58610393 T C CNOT1 Missense_Mutation p.I560V 0.48 deleterious(0) probably_damaging(0.994) TCGA-AF-A56K-01 16 72174316 72174316 C T PMFBP1 Missense_Mutation p.A268T 0.44 tolerated(0.24) possibly_damaging(0.726) TCGA-AF-A56K-01 17 3336376 3336376 G T OR1E2 Missense_Mutation p.L254I 0.08 deleterious(0.02) benign(0.436) TCGA-AF-A56K-01 17 38346939 38346939 C T RAPGEFL1 Silent p.I214I 0.10 TCGA-AF-A56K-01 17 50235098 50235098 C T CA10 Missense_Mutation p.V17I 0.12 tolerated(0.71) benign(0.028) TCGA-AF-A56K-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.58 TCGA-AF-A56K-01 17 78450040 78450042 CTT - NPTX1 In_Frame_Del p.K69del 0.18 TCGA-AF-A56K-01 17 79096124 79096124 C T AATK Missense_Mutation p.A538T 0.36 tolerated(0.76) benign(0.002) TCGA-AF-A56K-01 17 79278682 79278682 C T LINC00482 RNA 0.26 TCGA-AF-A56K-01 18 32392021 32392021 G T DTNA Nonsense_Mutation p.E183* 0.49 TCGA-AF-A56K-01 18 59221943 59221943 C A CDH20 3'UTR 0.36 TCGA-AF-A56K-01 19 15918548 15918548 C A OR10H1 Missense_Mutation p.Q100H 0.28 deleterious(0) probably_damaging(0.999) TCGA-AF-A56K-01 19 16472557 16472557 T C EPS15L1 Intron 0.31 TCGA-AF-A56K-01 19 17412306 17412306 G A ABHD8 Silent p.P40P 0.10 TCGA-AF-A56K-01 19 42265158 42265158 G A CEA Silent p.P142P 0.13 TCGA-AF-A56K-01 19 42498266 42498266 G A ATP1A3 5'UTR 0.36 TCGA-AF-A56K-01 19 54203316 54203316 G C MIR518F RNA 0.17 TCGA-AF-A56K-01 19 9083943 9083943 C T MUC16 Silent p.T2624T 0.12 TCGA-AF-A56K-01 1 145116037 145116037 G T SEC22B RNA 0.17 TCGA-AF-A56K-01 1 145586681 145586681 G A NUDT17 Missense_Mutation p.P299S 0.15 deleterious_low_confidence(0.03) benign(0.008) TCGA-AF-A56K-01 1 154318715 154318715 C T ATP8B2 Silent p.P962P 0.19 TCGA-AF-A56K-01 1 1580574 1580574 G A CDK11B Missense_Mutation p.R185W 0.29 probably_damaging(0.968) TCGA-AF-A56K-01 1 18811858 18811858 G A KLHDC7A 3'UTR 0.16 TCGA-AF-A56K-01 1 190234086 190234086 G A BRINP3 Missense_Mutation p.T176M 0.18 deleterious(0.03) benign(0.235) TCGA-AF-A56K-01 1 21943936 21943936 C T RAP1GAP Missense_Mutation p.G116R 0.62 deleterious(0) probably_damaging(0.999) TCGA-AF-A56K-01 1 225394790 225394790 G A DNAH14 Missense_Mutation p.G1676R 0.23 deleterious(0) possibly_damaging(0.84) TCGA-AF-A56K-01 1 36216980 36216980 C A CLSPN Missense_Mutation p.E633D 0.09 deleterious(0.05) possibly_damaging(0.453) TCGA-AF-A56K-01 1 53974888 53974888 G T GLIS1 Missense_Mutation p.A537E 0.19 deleterious(0) benign(0.245) TCGA-AF-A56K-01 20 31981850 31981850 G A CDK5RAP1 Missense_Mutation p.T144I 0.03 deleterious(0) probably_damaging(0.976) TCGA-AF-A56K-01 20 48166618 48166618 G A PTGIS Silent p.H61H 0.05 TCGA-AF-A56K-01 20 61341159 61341159 G A NTSR1 Silent p.A200A 0.11 TCGA-AF-A56K-01 22 28193514 28193514 C T MN1 Silent p.T1006T 0.14 TCGA-AF-A56K-01 22 30765567 30765567 C T CCDC157 Missense_Mutation p.T132M 0.19 tolerated(0.59) benign(0.001) TCGA-AF-A56K-01 2 101893723 101893723 G T RNF149 Silent p.R394R 0.25 TCGA-AF-A56K-01 2 1094083 1094083 C A SNTG2 Missense_Mutation p.F104L 0.35 tolerated(0.08) benign(0.396) TCGA-AF-A56K-01 2 1491610 1491610 A T TPO Missense_Mutation p.I539L 0.28 tolerated(1) benign(0.004) TCGA-AF-A56K-01 2 1667425 1667425 T C PXDN Missense_Mutation p.I507V 0.09 tolerated(0.31) benign(0.005) TCGA-AF-A56K-01 2 169814614 169814614 C A ABCB11 Nonsense_Mutation p.E735* 0.09 TCGA-AF-A56K-01 2 178096291 178096291 G A NFE2L2 Missense_Mutation p.S347L 0.08 deleterious(0) probably_damaging(1) TCGA-AF-A56K-01 2 202211361 202211361 C T ALS2CR12 Missense_Mutation p.R91Q 0.07 tolerated(0.14) possibly_damaging(0.56) TCGA-AF-A56K-01 2 203147098 203147098 A C NOP58 Missense_Mutation p.K67T 0.24 deleterious(0.03) possibly_damaging(0.901) TCGA-AF-A56K-01 2 203848541 203848541 A G CARF 3'UTR 0.33 TCGA-AF-A56K-01 2 212543801 212543801 A G ERBB4 Missense_Mutation p.I533T 0.05 deleterious(0.02) benign(0.165) TCGA-AF-A56K-01 2 233756110 233756110 G A NGEF Silent p.I410I 0.08 TCGA-AF-A56K-01 2 234239 234239 G A SH3YL1 Missense_Mutation p.R109C 0.12 deleterious(0.01) possibly_damaging(0.832) TCGA-AF-A56K-01 2 29415906 29415906 A G ALK 3'UTR 0.29 TCGA-AF-A56K-01 2 31135130 31135130 G T GALNT14 Missense_Mutation p.P492T 0.38 tolerated(0.61) probably_damaging(0.948) TCGA-AF-A56K-01 2 50149142 50149142 G T NRXN1 Silent p.P1528P 0.10 TCGA-AF-A56K-01 2 50850704 50850704 G A NRXN1 Silent p.Y327Y 0.42 TCGA-AF-A56K-01 2 51254959 51254959 G A NRXN1 Silent p.S151S 0.14 TCGA-AF-A56K-01 2 69318009 69318009 A G ANTXR1 Missense_Mutation p.I221V 0.21 deleterious(0.03) benign(0.394) TCGA-AF-A56K-01 2 73496531 73496531 C T FBXO41 Silent p.V76V 0.40 TCGA-AF-A56K-01 2 96795653 96795653 C T ASTL Missense_Mutation p.G262S 0.30 deleterious(0) probably_damaging(1) TCGA-AF-A56K-01 3 10491155 10491155 C T ATP2B2 Missense_Mutation p.G25R 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-AF-A56K-01 3 128751683 128751683 G A EFCC1 Missense_Mutation p.R386H 0.05 deleterious(0) possibly_damaging(0.819) TCGA-AF-A56K-01 3 132202373 132202373 C T DNAJC13 Missense_Mutation p.T1045I 0.06 tolerated(0.27) benign(0.015) TCGA-AF-A56K-01 3 151155671 151155671 G T IGSF10 Nonsense_Mutation p.Y2226* 0.06 TCGA-AF-A56K-01 3 25635159 25635159 G T RARB Nonsense_Mutation p.E318* 0.22 TCGA-AF-A56K-01 3 97466293 97466293 C T EPHA6 Missense_Mutation p.P1052L 0.17 deleterious(0.03) benign(0.21) TCGA-AF-A56K-01 4 123301274 123301274 C T ADAD1 Missense_Mutation p.A17V 0.05 tolerated(0.08) probably_damaging(0.917) TCGA-AF-A56K-01 4 40810964 40810964 G C NSUN7 3'UTR 0.18 TCGA-AF-A56K-01 4 41615535 41615535 T C LIMCH1 Missense_Mutation p.I180T 0.24 deleterious(0) probably_damaging(0.982) TCGA-AF-A56K-01 5 100238606 100238606 G T ST8SIA4 Silent p.I18I 0.20 TCGA-AF-A56K-01 5 112174784 112174784 A T APC Nonsense_Mutation p.K1165* 0.53 TCGA-AF-A56K-01 5 114548077 114548077 C T PGGT1B 3'UTR 0.20 TCGA-AF-A56K-01 5 122163081 122163081 C T SNX2 Missense_Mutation p.A455V 0.16 tolerated(0.06) benign(0.167) TCGA-AF-A56K-01 5 126738338 126738338 G T MEGF10 Missense_Mutation p.G294V 0.47 deleterious(0) possibly_damaging(0.886) TCGA-AF-A56K-01 5 140481655 140481655 C T PCDHB3 Silent p.S474S 0.42 TCGA-AF-A56K-01 5 140530499 140530499 C T PCDHB6 Missense_Mutation p.R221W 0.58 deleterious(0) probably_damaging(0.98) TCGA-AF-A56K-01 5 140731807 140731807 C T PCDHGB1 Silent p.F660F 0.56 TCGA-AF-A56K-01 5 140753951 140753951 C T PCDHGA6 Missense_Mutation p.R101W 0.35 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-AF-A56K-01 5 141051750 141051750 G A ARAP3 Missense_Mutation p.R502W 0.18 deleterious(0) probably_damaging(0.946) TCGA-AF-A56K-01 5 147594530 147594530 C A SPINK6 3'UTR 0.18 TCGA-AF-A56K-01 5 38463956 38463956 G T EGFLAM Silent p.L974L 0.37 TCGA-AF-A56K-01 5 665157 665157 C T TPPP 3'UTR 0.29 TCGA-AF-A56K-01 5 67576404 67576404 G T PIK3R1 Missense_Mutation p.R228M 0.05 deleterious(0.03) possibly_damaging(0.551) TCGA-AF-A56K-01 6 135358602 135358602 T A HBS1L Intron 0.21 TCGA-AF-A56K-01 6 155451501 155451501 C T TIAM2 Missense_Mutation p.R382W 0.20 deleterious(0) probably_damaging(0.973) TCGA-AF-A56K-01 6 29342701 29342701 C T OR12D3 Missense_Mutation p.V122I 0.18 tolerated(0.07) benign(0.21) TCGA-AF-A56K-01 7 110763275 110763275 C G LRRN3 Missense_Mutation p.H149Q 0.34 deleterious(0) probably_damaging(1) TCGA-AF-A56K-01 7 110763290 110763290 A T LRRN3 Silent p.T154T 0.31 TCGA-AF-A56K-01 7 148844750 148844750 C T ZNF398 5'UTR 0.11 TCGA-AF-A56K-01 7 35289786 35289786 G A TBX20 Nonsense_Mutation p.Q53* 0.10 TCGA-AF-A56K-01 7 48353935 48353935 T A ABCA13 Missense_Mutation p.F3263Y 0.17 probably_damaging(0.989) TCGA-AF-A56K-01 7 72416706 72416706 C T POM121 Intron 0.09 TCGA-AF-A56K-01 7 74203006 74203006 C T NCF1 Missense_Mutation p.R337C 0.31 deleterious(0.01) possibly_damaging(0.773) TCGA-AF-A56K-01 7 83590523 83590523 T C SEMA3A 3'UTR 0.38 TCGA-AF-A56K-01 8 125025736 125025736 G T FER1L6 Missense_Mutation p.M629I 0.23 deleterious(0.04) benign(0.003) TCGA-AF-A56K-01 8 139661928 139661928 C A COL22A1 Nonsense_Mutation p.E1143* 0.15 TCGA-AF-A56K-01 8 143921846 143921846 G A GML 5'UTR 0.38 TCGA-AF-A56K-01 8 144997024 144997024 G A PLEC Missense_Mutation p.A2495V 0.19 benign(0.115) TCGA-AF-A56K-01 8 36788632 36788632 C A KCNU1 Missense_Mutation p.S967Y 0.06 deleterious(0) probably_damaging(0.935) TCGA-AF-A56K-01 8 48848987 48848990 TGTC - PRKDC Frame_Shift_Del p.D401Lfs*39 0.21 TCGA-AF-A56K-01 9 35714267 35714267 G A TLN1 Missense_Mutation p.A1030V 0.36 deleterious(0.02) probably_damaging(0.972) TCGA-AF-A56K-01 X 132351368 132351368 C T TFDP3 Missense_Mutation p.G307E 0.10 deleterious(0) probably_damaging(0.998) TCGA-AF-A56K-01 X 153524099 153524099 G A TKTL1 5'UTR 0.28 TCGA-AF-A56K-01 X 23398359 23398359 G A PTCHD1 Missense_Mutation p.V335I 0.09 tolerated(0.5) benign(0.006) TCGA-AF-A56K-01 X 57936310 57936310 G A ZXDA Missense_Mutation p.T182I 0.12 deleterious(0) probably_damaging(0.994) TCGA-AF-A56L-01 10 101165546 101165546 C T GOT1 Silent p.P203P 0.18 TCGA-AF-A56L-01 10 21807111 21807111 A T SKIDA1 5'UTR 0.18 TCGA-AF-A56L-01 10 26501052 26501052 G A MYO3A 3'UTR 0.12 TCGA-AF-A56L-01 10 48389993 48389993 C T RBP3 Silent p.T295T 0.24 TCGA-AF-A56L-01 10 84745387 84745387 C A NRG3 3'UTR 0.21 TCGA-AF-A56L-01 11 118220558 118220558 G T CD3G Missense_Mutation p.K60N 0.11 tolerated(0.48) benign(0.004) TCGA-AF-A56L-01 11 123676994 123676994 G A OR6M1 Nonsense_Mutation p.R22* 0.09 TCGA-AF-A56L-01 11 134201975 134201975 G C GLB1L2 Missense_Mutation p.R7P 0.07 tolerated(0.1) possibly_damaging(0.453) TCGA-AF-A56L-01 11 134201976 134201976 G T GLB1L2 Silent p.R7R 0.07 TCGA-AF-A56L-01 11 14515257 14515257 C T COPB1 Missense_Mutation p.R141H 0.13 deleterious(0.01) probably_damaging(0.967) TCGA-AF-A56L-01 11 16068212 16068212 C A SOX6 Missense_Mutation p.G491W 0.17 deleterious(0) probably_damaging(0.996) TCGA-AF-A56L-01 11 45946127 45946127 G C GYLTL1B Missense_Mutation p.S188T 0.35 tolerated(0.22) benign(0.007) TCGA-AF-A56L-01 11 62361745 62361745 G A MTA2 Silent p.A609A 0.27 TCGA-AF-A56L-01 11 64678711 64678711 C T ATG2A Missense_Mutation p.R422H 0.21 deleterious(0) probably_damaging(0.959) TCGA-AF-A56L-01 11 67559574 67559574 G A FAM86C2P RNA 0.26 TCGA-AF-A56L-01 11 72288376 72288376 C A PDE2A 3'UTR 0.21 TCGA-AF-A56L-01 11 870468 870468 G A CHID1 Missense_Mutation p.R356W 0.11 deleterious(0) possibly_damaging(0.676) TCGA-AF-A56L-01 11 89896740 89896740 G T NAALAD2 Missense_Mutation p.W411C 0.12 deleterious(0) probably_damaging(0.998) TCGA-AF-A56L-01 12 122437639 122437639 C T WDR66 Silent p.N1008N 0.16 TCGA-AF-A56L-01 12 123815803 123815803 T A SBNO1 Missense_Mutation p.R343S 0.11 deleterious(0) probably_damaging(1) TCGA-AF-A56L-01 12 48722912 48722912 C T H1FNT 5'UTR 0.30 TCGA-AF-A56L-01 12 49993790 49993790 G A FAM186B Missense_Mutation p.R545W 0.25 tolerated(0.13) benign(0.009) TCGA-AF-A56L-01 12 53097124 53097124 G A KRT77 Missense_Mutation p.P32L 0.35 tolerated(0.27) unknown(0) TCGA-AF-A56L-01 12 53874909 53874909 G A MAP3K12 3'UTR 0.08 TCGA-AF-A56L-01 12 76844626 76844630 CCTAC - OSBPL8 Splice_Site p.X73_splice 0.11 TCGA-AF-A56L-01 13 103701793 103701793 G C SLC10A2 Missense_Mutation p.C255W 0.05 deleterious(0) possibly_damaging(0.569) TCGA-AF-A56L-01 13 112725350 112725350 C A SOX1 3'UTR 0.06 TCGA-AF-A56L-01 13 113765032 113765032 C T F7 Silent p.G53G 0.16 TCGA-AF-A56L-01 13 35733700 35733700 C A NBEA Missense_Mutation p.T1131K 0.05 tolerated_low_confidence(0.24) benign(0.009) TCGA-AF-A56L-01 13 51826303 51826303 C T FAM124A Missense_Mutation p.T303M 0.10 deleterious(0) probably_damaging(1) TCGA-AF-A56L-01 13 99738538 99738538 G A DOCK9-AS2 5'Flank 0.14 TCGA-AF-A56L-01 14 20711822 20711822 C T OR11H4 Missense_Mutation p.T291M 0.17 tolerated(0.21) benign(0) TCGA-AF-A56L-01 14 33147580 33147580 C T AKAP6 Silent p.L932L 0.19 TCGA-AF-A56L-01 14 42360714 42360714 G T LRFN5 Missense_Mutation p.M549I 0.46 tolerated(0.13) benign(0.034) TCGA-AF-A56L-01 14 47120699 47120699 C A RPL10L Missense_Mutation p.G81C 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-AF-A56L-01 14 55516040 55516043 ATCA - SOCS4 3'UTR 0.22 TCGA-AF-A56L-01 14 55817680 55817680 A T FBXO34 Missense_Mutation p.Y191F 0.37 tolerated(0.49) possibly_damaging(0.486) TCGA-AF-A56L-01 14 59112467 59112467 G A DACT1 Missense_Mutation p.V376I 0.06 tolerated(0.37) benign(0.03) TCGA-AF-A56L-01 14 60759189 60759189 G A PPM1A Missense_Mutation p.D453N 0.13 deleterious_low_confidence(0.04) benign(0.26) TCGA-AF-A56L-01 14 65259931 65259931 G A SPTB Missense_Mutation p.P817L 0.35 deleterious(0.01) probably_damaging(0.983) TCGA-AF-A56L-01 14 95056616 95056616 G A SERPINA5 Silent p.T286T 0.39 TCGA-AF-A56L-01 15 27216642 27216642 G A GABRG3 5'UTR 0.11 TCGA-AF-A56L-01 15 28356892 28356892 G A HERC2 3'UTR 0.16 TCGA-AF-A56L-01 15 29429314 29429314 G A FAM189A1 Silent p.D238D 0.14 TCGA-AF-A56L-01 15 33936683 33936683 C T RYR3 Missense_Mutation p.T1243M 0.08 possibly_damaging(0.74) TCGA-AF-A56L-01 15 69222986 69222986 G A SPESP1 5'UTR 0.19 TCGA-AF-A56L-01 15 78485876 78485876 G A ACSBG1 Missense_Mutation p.T212M 0.22 deleterious(0) possibly_damaging(0.846) TCGA-AF-A56L-01 16 21288836 21288836 G A CRYM Silent p.Y80Y 0.06 TCGA-AF-A56L-01 16 31092881 31092881 C T ZNF646 Missense_Mutation p.R1746W 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-AF-A56L-01 16 31927605 31927605 C T ZNF267 Missense_Mutation p.R679W 0.06 deleterious(0.03) possibly_damaging(0.904) TCGA-AF-A56L-01 16 57735967 57735967 C T CCDC135 Silent p.N208N 0.32 TCGA-AF-A56L-01 16 70841601 70841601 C T HYDIN Missense_Mutation p.G5083E 0.28 probably_damaging(0.988) TCGA-AF-A56L-01 16 87741984 87741984 G A KLHDC4 Silent p.S512S 0.39 TCGA-AF-A56L-01 16 88600107 88600107 G A ZFPM1 Missense_Mutation p.E581K 0.12 deleterious(0) probably_damaging(0.996) TCGA-AF-A56L-01 17 27613284 27613284 C T NUFIP2 Silent p.L576L 0.16 TCGA-AF-A56L-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.49 deleterious(0) probably_damaging(1) TCGA-AF-A56L-01 18 19284553 19284553 A T ABHD3 Missense_Mutation p.V25E 0.46 tolerated(0.1) benign(0.017) TCGA-AF-A56L-01 18 22805224 22805224 G A ZNF521 Silent p.Y886Y 0.55 TCGA-AF-A56L-01 18 22807536 22807536 G T ZNF521 Missense_Mutation p.L116I 0.53 tolerated(0.24) probably_damaging(0.99) TCGA-AF-A56L-01 18 48333126 48333126 C T MRO Missense_Mutation p.R79H 0.16 deleterious(0) probably_damaging(0.998) TCGA-AF-A56L-01 18 9888090 9888090 C A TXNDC2 Nonsense_Mutation p.C538* 0.12 TCGA-AF-A56L-01 19 11510571 11510571 C A RGL3 Missense_Mutation p.S575I 0.12 deleterious(0) unknown(0) TCGA-AF-A56L-01 19 17394768 17394768 C A ANKLE1 Missense_Mutation p.P399T 0.23 tolerated(0.06) benign(0.017) TCGA-AF-A56L-01 19 36322388 36322388 T C NPHS1 Missense_Mutation p.T1101A 0.13 tolerated(0.18) benign(0.014) TCGA-AF-A56L-01 19 38376636 38376636 C T WDR87 Missense_Mutation p.V2520I 0.13 unknown(0) TCGA-AF-A56L-01 19 56952794 56952794 C A ZNF667 Nonsense_Mutation p.E524* 0.07 TCGA-AF-A56L-01 19 57325825 57325825 T G PEG3 Missense_Mutation p.I1329L 0.09 tolerated(0.41) benign(0.001) TCGA-AF-A56L-01 19 57868480 57868480 G A ZNF304 Missense_Mutation p.G415R 0.14 deleterious(0.02) probably_damaging(1) TCGA-AF-A56L-01 19 58850454 58850454 G A ZSCAN22 Missense_Mutation p.C413Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-AF-A56L-01 1 115488994 115488994 G T SYCP1 Missense_Mutation p.A747S 0.16 tolerated(0.32) benign(0.257) TCGA-AF-A56L-01 1 118170530 118170531 - A FAM46C 3'UTR 0.09 TCGA-AF-A56L-01 1 169511785 169511785 C T F5 Missense_Mutation p.R848H 0.25 tolerated(0.55) benign(0.001) TCGA-AF-A56L-01 1 174363156 174363156 C T RABGAP1L Missense_Mutation p.P528L 0.20 deleterious(0) probably_damaging(0.978) TCGA-AF-A56L-01 1 176525743 176525743 C A PAPPA2 Missense_Mutation p.S95R 0.16 tolerated_low_confidence(0.35) benign(0.004) TCGA-AF-A56L-01 1 223175961 223175961 C A DISP1 Missense_Mutation p.Q408K 0.41 tolerated(0.11) probably_damaging(0.953) TCGA-AF-A56L-01 1 227218117 227218117 G T CDC42BPA Missense_Mutation p.T1242N 0.15 tolerated(0.23) benign(0.034) TCGA-AF-A56L-01 1 228003938 228003938 C T PRSS38 Missense_Mutation p.A99V 0.13 deleterious(0) probably_damaging(1) TCGA-AF-A56L-01 1 228494622 228494622 C T OBSCN Nonsense_Mutation p.R4940* 0.49 TCGA-AF-A56L-01 1 245021520 245021520 G A HNRNPU Silent p.G429G 0.10 TCGA-AF-A56L-01 1 248737762 248737762 C T OR2T34 Silent p.P99P 0.40 TCGA-AF-A56L-01 1 249141648 249141648 G A ZNF672 Missense_Mutation p.A59T 0.22 tolerated(0.52) benign(0.043) TCGA-AF-A56L-01 1 84418061 84418061 A G TTLL7 5'UTR 0.24 TCGA-AF-A56L-01 1 90179160 90179160 G A LRRC8C Missense_Mutation p.R344H 0.06 tolerated(0.11) possibly_damaging(0.877) TCGA-AF-A56L-01 1 986849 986849 G A AGRN Missense_Mutation p.R1796H 0.27 tolerated(0.57) benign(0.121) TCGA-AF-A56L-01 20 1187730 1187730 G A C20orf202 Missense_Mutation p.R118Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-AF-A56L-01 20 1552535 1552535 C A SIRPB1 Missense_Mutation p.Q194H 0.16 deleterious(0.03) possibly_damaging(0.463) TCGA-AF-A56L-01 20 25436386 25436386 G A NINL Missense_Mutation p.R1294W 0.20 tolerated(0.08) possibly_damaging(0.874) TCGA-AF-A56L-01 20 33451269 33451269 C T GGT7 Silent p.P84P 0.16 TCGA-AF-A56L-01 20 42164930 42164930 G A L3MBTL1 Missense_Mutation p.G685S 0.09 tolerated(0.15) benign(0.259) TCGA-AF-A56L-01 20 48503379 48503379 G A SLC9A8 Missense_Mutation p.V544M 0.12 tolerated(0.37) benign(0.006) TCGA-AF-A56L-01 20 58381174 58381174 A G PHACTR3 Missense_Mutation p.D418G 0.08 deleterious(0) benign(0.17) TCGA-AF-A56L-01 20 60348142 60348142 C T CDH4 Silent p.N160N 0.15 TCGA-AF-A56L-01 21 11039116 11039116 C T BAGE2 RNA 0.05 TCGA-AF-A56L-01 22 19184126 19184126 C T CLTCL1 Silent p.A1305A 0.15 TCGA-AF-A56L-01 22 45813680 45813680 G A RIBC2 Missense_Mutation p.R132Q 0.08 deleterious(0.04) probably_damaging(0.95) TCGA-AF-A56L-01 2 128409354 128409354 C T GPR17 3'UTR 0.18 TCGA-AF-A56L-01 2 131674042 131674042 C T ARHGEF4 5'Flank 0.08 TCGA-AF-A56L-01 2 212530159 212530159 G T ERBB4 Missense_Mutation p.P587Q 0.15 tolerated(0.08) possibly_damaging(0.717) TCGA-AF-A56L-01 2 218712997 218712997 G A TNS1 Missense_Mutation p.S623L 0.26 tolerated(0.69) benign(0.029) TCGA-AF-A56L-01 2 224828576 224828577 - AGA MRPL44 In_Frame_Ins p.S251_A252insE 0.29 TCGA-AF-A56L-01 2 228884818 228884818 C T SPHKAP Missense_Mutation p.G251E 0.29 tolerated(0.64) benign(0.002) TCGA-AF-A56L-01 2 234104046 234104046 C G INPP5D Missense_Mutation p.D854E 0.25 tolerated(0.55) possibly_damaging(0.839) TCGA-AF-A56L-01 2 283156 283156 C T FAM150B Silent p.R136R 0.32 TCGA-AF-A56L-01 2 28865748 28865748 C T PLB1 Missense_Mutation p.R1400W 0.15 deleterious(0.02) benign(0.009) TCGA-AF-A56L-01 2 33741630 33741630 A G RASGRP3 Missense_Mutation p.N31S 0.06 tolerated(0.9) benign(0.001) TCGA-AF-A56L-01 2 56420458 56420458 G T CCDC85A Nonsense_Mutation p.G375* 0.23 TCGA-AF-A56L-01 3 111664181 111664181 G A PHLDB2 Missense_Mutation p.V822I 0.04 tolerated(0.34) benign(0.002) TCGA-AF-A56L-01 3 122446735 122446735 A G PARP14 Missense_Mutation p.Q1673R 0.41 tolerated(0.26) benign(0.192) TCGA-AF-A56L-01 3 130748473 130748473 G C NEK11 5'UTR 0.24 TCGA-AF-A56L-01 3 131283182 131283182 A C CPNE4 Missense_Mutation p.D313E 0.20 deleterious(0) probably_damaging(0.978) TCGA-AF-A56L-01 3 142522896 142522896 G C TRPC1 Missense_Mutation p.S612T 0.10 tolerated(0.69) benign(0.122) TCGA-AF-A56L-01 3 148545666 148545666 G A CPB1 Missense_Mutation p.G19D 0.38 tolerated(0.69) benign(0.003) TCGA-AF-A56L-01 3 160474187 160474187 A T PPM1L Missense_Mutation p.I31F 0.30 tolerated(0.37) benign(0.001) TCGA-AF-A56L-01 3 160679586 160679586 C T PPM1L Silent p.Y154Y 0.13 TCGA-AF-A56L-01 3 196534703 196534703 A G PAK2 Silent p.S209S 0.08 TCGA-AF-A56L-01 3 48607324 48607324 G A COL7A1 Missense_Mutation p.R2504C 0.08 probably_damaging(0.997) TCGA-AF-A56L-01 3 49212244 49212244 G A KLHDC8B Missense_Mutation p.R204Q 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-AF-A56L-01 3 51263127 51263127 G T DOCK3 Nonsense_Mutation p.E434* 0.08 TCGA-AF-A56L-01 3 74347120 74347120 A T CNTN3 Missense_Mutation p.S797T 0.20 tolerated(0.07) benign(0.338) TCGA-AF-A56L-01 4 103518756 103518756 C T NFKB1 Silent p.D525D 0.31 TCGA-AF-A56L-01 4 104640769 104640769 C T TACR3 Missense_Mutation p.V22M 0.13 tolerated_low_confidence(0.15) benign(0.001) TCGA-AF-A56L-01 4 170912870 170912870 C A MFAP3L Missense_Mutation p.D297Y 0.45 deleterious(0) possibly_damaging(0.854) TCGA-AF-A56L-01 4 1843314 1843314 C T LETM1 Silent p.S118S 0.09 TCGA-AF-A56L-01 4 79400671 79400671 G T FRAS1 Missense_Mutation p.V2748L 0.42 probably_damaging(0.967) TCGA-AF-A56L-01 4 8613847 8613847 G A CPZ Missense_Mutation p.G441R 0.17 tolerated(0.11) possibly_damaging(0.67) TCGA-AF-A56L-01 4 86921674 86921674 C A ARHGAP24 Missense_Mutation p.S682R 0.20 tolerated(1) benign(0.003) TCGA-AF-A56L-01 5 112164616 112164616 C T APC Nonsense_Mutation p.R564* 0.40 TCGA-AF-A56L-01 5 112175429 112175430 - C APC Frame_Shift_Ins p.L1382Tfs*4 0.18 TCGA-AF-A56L-01 5 131283330 131283330 A C ACSL6 3'Flank 0.07 TCGA-AF-A56L-01 5 140306528 140306528 T G PCDHAC1 Silent p.A17A 0.07 TCGA-AF-A56L-01 5 148521594 148521594 C T ABLIM3 5'UTR 0.16 TCGA-AF-A56L-01 5 168690640 168690640 C T SLIT3 Intron 0.14 TCGA-AF-A56L-01 5 32073986 32073986 G T PDZD2 Missense_Mutation p.G925V 0.12 deleterious(0.02) probably_damaging(1) TCGA-AF-A56L-01 5 5319800 5319800 C T ADAMTS16 3'UTR 0.15 TCGA-AF-A56L-01 6 110301076 110301076 G A GPR6 Missense_Mutation p.R254H 0.34 deleterious(0.05) benign(0.029) TCGA-AF-A56L-01 6 130761757 130761757 T G TMEM200A Missense_Mutation p.F64V 0.17 tolerated(0.51) benign(0.228) TCGA-AF-A56L-01 6 139170459 139170459 C T ECT2L Silent p.S319S 0.05 TCGA-AF-A56L-01 6 152472791 152472791 G A SYNE1 Missense_Mutation p.A8116V 0.13 benign(0.276) TCGA-AF-A56L-01 6 154542461 154542461 C A IPCEF1 Missense_Mutation p.A108S 0.15 deleterious(0) possibly_damaging(0.906) TCGA-AF-A56L-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.08 TCGA-AF-A56L-01 6 160908455 160908455 G T LPAL2 RNA 0.38 TCGA-AF-A56L-01 6 161522950 161522950 G A MAP3K4 Missense_Mutation p.R1234Q 0.28 deleterious(0.01) probably_damaging(0.98) TCGA-AF-A56L-01 6 28227566 28227566 G A NKAPL Silent p.P139P 0.25 TCGA-AF-A56L-01 6 32157783 32157783 C T PBX2 5'UTR 0.29 TCGA-AF-A56L-01 6 74079100 74079100 G A OOEP Nonsense_Mutation p.R67* 0.36 TCGA-AF-A56L-01 7 113517823 113517823 T C PPP1R3A Silent p.L1108L 0.11 TCGA-AF-A56L-01 7 130337738 130337738 G A COPG2 Silent p.I98I 0.08 TCGA-AF-A56L-01 7 131148064 131148064 A T MKLN1 Missense_Mutation p.E538D 0.14 tolerated(0.71) benign(0.001) TCGA-AF-A56L-01 7 142479941 142479941 G A PRSS3P2 RNA 0.17 TCGA-AF-A56L-01 7 149520887 149520887 C T SSPO RNA 0.12 TCGA-AF-A56L-01 7 1519996 1519996 C T INTS1 Missense_Mutation p.R1344Q 0.21 tolerated(0.32) benign(0.002) TCGA-AF-A56L-01 7 154863297 154863297 C T HTR5A Missense_Mutation p.R230C 0.22 deleterious(0.01) possibly_damaging(0.643) TCGA-AF-A56L-01 7 72400648 72400648 A C POM121 Missense_Mutation p.Q160P 0.11 deleterious(0) probably_damaging(0.967) TCGA-AF-A56L-01 7 87477215 87477215 C G SLC25A40 Missense_Mutation p.G137A 0.08 tolerated(0.21) probably_damaging(0.964) TCGA-AF-A56L-01 7 91631798 91631798 A G AKAP9 Missense_Mutation p.N856S 0.19 probably_damaging(0.997) TCGA-AF-A56L-01 8 106813717 106813717 A C ZFPM2 Missense_Mutation p.K469N 0.11 tolerated(0.1) possibly_damaging(0.663) TCGA-AF-A56L-01 8 143546222 143546222 C A BAI1 Silent p.G221G 0.33 TCGA-AF-A56L-01 8 38285863 38285863 C T FGFR1 Intron 0.72 TCGA-AF-A56L-01 8 48767904 48767904 G A PRKDC Nonsense_Mutation p.R2213* 0.08 TCGA-AF-A56L-01 8 70970919 70970919 G A PRDM14 Missense_Mutation p.R448W 0.08 deleterious(0) probably_damaging(1) TCGA-AF-A56L-01 8 72968004 72968004 A G TRPA1 Silent p.G427G 0.14 TCGA-AF-A56L-01 9 131554822 131554822 G A TBC1D13 Missense_Mutation p.E118K 0.45 tolerated(0.1) benign(0.02) TCGA-AF-A56L-01 9 134340361 134340361 C T PRRC2B Missense_Mutation p.A539V 0.17 tolerated(0.22) possibly_damaging(0.887) TCGA-AF-A56L-01 9 32543127 32543127 C T TOPORS Missense_Mutation p.D466N 0.59 tolerated(0.41) benign(0.219) TCGA-AF-A56L-01 9 90220046 90220046 C T DAPK1 Silent p.H80H 0.18 TCGA-AF-A56L-01 9 99113389 99113389 C G SLC35D2 Missense_Mutation p.A162P 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-AF-A56L-01 X 106893202 106893202 C T PRPS1 Silent p.A299A 0.03 TCGA-AF-A56L-01 X 109697119 109697119 A G RGAG1 Missense_Mutation p.M1092V 0.34 tolerated(0.18) benign(0.311) TCGA-AF-A56L-01 X 115586207 115586207 C T SLC6A14 Missense_Mutation p.A490V 0.11 tolerated(0.11) benign(0.344) TCGA-AF-A56L-01 X 122767818 122767818 G T THOC2 Missense_Mutation p.Q708K 0.16 deleterious(0.02) benign(0.306) TCGA-AF-A56L-01 X 128633731 128633731 G T SMARCA1 Missense_Mutation p.L419M 0.18 tolerated(1) probably_damaging(0.951) TCGA-AF-A56L-01 X 129267365 129267365 G A AIFM1 Silent p.H457H 0.11 TCGA-AF-A56L-01 X 134426380 134426380 C A ZNF75D Missense_Mutation p.G144V 0.09 deleterious(0.02) possibly_damaging(0.617) TCGA-AF-A56L-01 X 142718111 142718111 C T SLITRK4 Missense_Mutation p.V272M 0.10 tolerated(1) possibly_damaging(0.721) TCGA-AF-A56L-01 X 17394315 17394315 C T NHS Silent p.H145H 0.14 TCGA-AF-A56L-01 X 30254992 30254992 A G MAGEB3 Silent p.R317R 0.08 TCGA-AF-A56L-01 X 35821417 35821417 G C MAGEB16 3'UTR 0.25 TCGA-AF-A56L-01 X 41078436 41078436 C T USP9X Missense_Mutation p.R2173C 0.04 deleterious(0) possibly_damaging(0.53) TCGA-AF-A56L-01 X 41334051 41334051 C A NYX Missense_Mutation p.R449S 0.24 tolerated_low_confidence(0.73) benign(0) TCGA-AF-A56L-01 X 45017041 45017041 G T CXorf36 Silent p.I197I 0.22 TCGA-AF-A56L-01 X 47430312 47430312 G A ARAF Silent p.P529P 0.15 TCGA-AF-A56L-01 X 48460302 48460302 C T WDR13 Missense_Mutation p.A321V 0.26 tolerated(0.12) benign(0.065) TCGA-AF-A56L-01 X 88009456 88009456 G A CPXCR1 3'UTR 0.08 TCGA-AF-A56L-01 X 9864287 9864287 C A SHROOM2 Missense_Mutation p.P780H 0.12 deleterious(0.01) possibly_damaging(0.608) TCGA-AF-A56N-01 10 102289596 102289596 T G NDUFB8 Silent p.R5R 0.07 TCGA-AF-A56N-01 10 124713750 124713750 A G C10orf88 5'UTR 0.49 TCGA-AF-A56N-01 10 126311849 126311849 C T FAM53B Missense_Mutation p.D411N 0.25 tolerated(0.29) probably_damaging(0.957) TCGA-AF-A56N-01 10 126384751 126384751 T A FAM53B Missense_Mutation p.T37S 0.37 deleterious(0.01) benign(0.053) TCGA-AF-A56N-01 10 20432254 20432254 G A PLXDC2 Missense_Mutation p.R191Q 0.47 tolerated(0.09) possibly_damaging(0.791) TCGA-AF-A56N-01 10 21805480 21805480 T C SKIDA1 Silent p.E424E 0.30 TCGA-AF-A56N-01 10 21884311 21884311 A G MLLT10 Missense_Mutation p.N116S 0.51 deleterious(0) benign(0.314) TCGA-AF-A56N-01 10 55755225 55755225 A C PCDH15 Intron 0.46 TCGA-AF-A56N-01 10 64414636 64414636 A C ZNF365 Intron 0.33 TCGA-AF-A56N-01 10 92675940 92675940 G A ANKRD1 Silent p.S213S 0.22 TCGA-AF-A56N-01 10 99995185 99995185 G A R3HCC1L Missense_Mutation p.R679H 0.29 deleterious(0.01) possibly_damaging(0.755) TCGA-AF-A56N-01 11 134131039 134131039 C T ACAD8 Silent p.A269A 0.14 TCGA-AF-A56N-01 11 17615697 17615697 G T OTOG Missense_Mutation p.S1143I 0.09 probably_damaging(0.997) TCGA-AF-A56N-01 11 55659119 55659119 G T TRIM51 3'UTR 0.25 TCGA-AF-A56N-01 11 6024245 6024245 G C OR56A4 Missense_Mutation p.S45C 0.37 deleterious_low_confidence(0.01) benign(0.071) TCGA-AF-A56N-01 11 63174055 63174055 G T SLC22A9 Missense_Mutation p.G387V 0.33 deleterious(0) probably_damaging(0.993) TCGA-AF-A56N-01 11 63765129 63765129 C G OTUB1 3'UTR 0.23 TCGA-AF-A56N-01 11 65653052 65653052 A T FIBP Missense_Mutation p.F199I 0.40 deleterious(0.04) benign(0.327) TCGA-AF-A56N-01 11 75298190 75298190 C T MAP6 Missense_Mutation p.D786N 0.51 deleterious_low_confidence(0.01) benign(0.071) TCGA-AF-A56N-01 11 7846788 7846788 G A OR5P3 Silent p.H244H 0.35 TCGA-AF-A56N-01 11 8161436 8161436 A T RIC3 Intron 0.37 TCGA-AF-A56N-01 12 124497273 124497273 T A ZNF664 Silent p.T194T 0.20 TCGA-AF-A56N-01 12 124497333 124497333 G C ZNF664 Silent p.L214L 0.24 TCGA-AF-A56N-01 12 129559527 129559527 G T TMEM132D Missense_Mutation p.F731L 0.45 tolerated(0.05) probably_damaging(0.954) TCGA-AF-A56N-01 12 25034260 25034260 C T BCAT1 Missense_Mutation p.R134H 0.38 deleterious(0.04) benign(0.309) TCGA-AF-A56N-01 12 40653379 40653379 C T LRRK2 Nonsense_Mutation p.R506* 0.14 TCGA-AF-A56N-01 12 54920454 54920454 C T NCKAP1L Missense_Mutation p.R767C 0.40 deleterious(0) possibly_damaging(0.892) TCGA-AF-A56N-01 12 58109885 58109885 G A OS9 Silent p.Q267Q 0.37 TCGA-AF-A56N-01 12 88376879 88376879 C A C12orf50 Splice_Site p.X407_splice 0.32 TCGA-AF-A56N-01 13 101910862 101910862 C T NALCN Missense_Mutation p.V400M 0.33 deleterious(0.02) possibly_damaging(0.8) TCGA-AF-A56N-01 13 109779738 109779738 T G MYO16 Silent p.P1275P 0.15 TCGA-AF-A56N-01 13 113751250 113751250 C T MCF2L 3'UTR 0.67 TCGA-AF-A56N-01 13 35923242 35923244 TAG AA NBEA Splice_Site p.X1968_splice 0.28 TCGA-AF-A56N-01 13 43528130 43528130 G T EPSTI1 Missense_Mutation p.L173I 0.55 tolerated(0.1) possibly_damaging(0.834) TCGA-AF-A56N-01 13 50206961 50206961 A T ARL11 3'UTR 0.12 TCGA-AF-A56N-01 13 50589224 50589260 AAAAAAAATATATATATATATATATATATATATATAT - TRIM13 3'Flank 0.16 TCGA-AF-A56N-01 13 51519596 51519596 A G RNASEH2B Missense_Mutation p.N182D 0.28 tolerated(0.3) benign(0.005) TCGA-AF-A56N-01 14 104165061 104165061 C T XRCC3 3'UTR 0.67 TCGA-AF-A56N-01 14 105414483 105414483 C T AHNAK2 Silent p.T2435T 0.80 TCGA-AF-A56N-01 14 37344158 37344158 T C SLC25A21 Intron 0.09 TCGA-AF-A56N-01 14 64520172 64520172 G T SYNE2 Nonsense_Mutation p.E3181* 0.64 TCGA-AF-A56N-01 15 28273203 28273203 G A OCA2 Missense_Mutation p.S110L 0.12 tolerated_low_confidence(0.89) benign(0.002) TCGA-AF-A56N-01 15 42371908 42371908 C G PLA2G4D Missense_Mutation p.E382Q 0.58 tolerated(0.17) benign(0.066) TCGA-AF-A56N-01 15 43814489 43814489 A C MAP1A Missense_Mutation p.Q273P 0.65 possibly_damaging(0.496) TCGA-AF-A56N-01 15 49031220 49031220 T C CEP152 Silent p.L1453L 0.62 TCGA-AF-A56N-01 15 68468967 68468967 C T PIAS1 Missense_Mutation p.P486S 0.15 tolerated(0.11) benign(0.03) TCGA-AF-A56N-01 15 94945221 94945221 C T MCTP2 Silent p.S686S 0.28 TCGA-AF-A56N-01 16 1020961 1020961 G C LMF1 Missense_Mutation p.T7R 0.40 tolerated_low_confidence(0.14) benign(0.063) TCGA-AF-A56N-01 16 1261259 1261259 G A CACNA1H Missense_Mutation p.A1439T 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-AF-A56N-01 16 1995530 1995530 G C RPL3L Missense_Mutation p.F379L 0.46 deleterious(0.03) benign(0.21) TCGA-AF-A56N-01 16 30615634 30615634 C G ZNF689 Missense_Mutation p.S485T 0.33 tolerated_low_confidence(0.13) benign(0.008) TCGA-AF-A56N-01 16 56377905 56377905 C T GNAO1 3'UTR 0.46 TCGA-AF-A56N-01 16 70497604 70497604 T C FUK Missense_Mutation p.V54A 0.05 deleterious(0.01) possibly_damaging(0.887) TCGA-AF-A56N-01 16 71898874 71898874 C A ZNF821 Missense_Mutation p.V82F 0.44 tolerated(0.25) benign(0.054) TCGA-AF-A56N-01 16 87902939 87902939 C G SLC7A5 Missense_Mutation p.K30N 0.44 tolerated(0.39) benign(0) TCGA-AF-A56N-01 16 89289569 89289569 C T ZNF778 Missense_Mutation p.A41V 0.39 tolerated(0.08) benign(0) TCGA-AF-A56N-01 16 89761097 89761097 G C CDK10 Missense_Mutation p.E231D 0.08 deleterious(0) probably_damaging(1) TCGA-AF-A56N-01 17 18024163 18024163 G A MYO15A Silent p.A683A 0.53 TCGA-AF-A56N-01 17 27899425 27899425 G A TP53I13 Missense_Mutation p.G260E 0.25 tolerated(0.46) benign(0.013) TCGA-AF-A56N-01 17 3765507 3765507 A G CAMKK1 3'Flank 0.08 TCGA-AF-A56N-01 17 48918183 48918183 G C WFIKKN2 Missense_Mutation p.D512H 0.44 deleterious(0) probably_damaging(0.984) TCGA-AF-A56N-01 17 64224207 64224207 G A APOH Nonsense_Mutation p.R58* 0.38 TCGA-AF-A56N-01 17 70120079 70120079 C T SOX9 Nonsense_Mutation p.Q361* 0.48 TCGA-AF-A56N-01 17 72522003 72522003 C T CD300LB Missense_Mutation p.R122H 0.32 tolerated(0.67) benign(0.002) TCGA-AF-A56N-01 17 74014669 74014669 G A EVPL Nonsense_Mutation p.Q433* 0.32 TCGA-AF-A56N-01 17 74621315 74621315 T C ST6GALNAC1 3'UTR 0.41 TCGA-AF-A56N-01 17 75199658 75199658 G A SEC14L1 Missense_Mutation p.R339Q 0.36 tolerated(0.05) benign(0.169) TCGA-AF-A56N-01 17 7578539 7578555 TGAGGGCAGGGGAGTAC - TP53 Splice_Site p.X126_splice 0.54 TCGA-AF-A56N-01 18 32418738 32418738 G T DTNA Intron 0.09 TCGA-AF-A56N-01 18 64211329 64211329 C T CDH19 Missense_Mutation p.D365N 0.65 deleterious(0.03) probably_damaging(0.998) TCGA-AF-A56N-01 18 76754742 76754742 C A SALL3 Silent p.S917S 0.53 TCGA-AF-A56N-01 19 2078674 2078674 C T MOB3A 5'UTR 0.31 TCGA-AF-A56N-01 19 30935366 30935366 C G ZNF536 Silent p.P299P 0.31 TCGA-AF-A56N-01 19 36018755 36018755 G T SBSN Missense_Mutation p.N143K 0.09 deleterious(0.01) probably_damaging(0.925) TCGA-AF-A56N-01 19 42381308 42381308 G A CD79A 5'UTR 0.57 TCGA-AF-A56N-01 19 45975892 45975892 T G FOSB Missense_Mutation p.F213L 0.05 deleterious(0) possibly_damaging(0.786) TCGA-AF-A56N-01 19 46289890 46289890 G A DMWD Silent p.N288N 0.25 TCGA-AF-A56N-01 19 46998215 46998215 G A PNMAL2 Missense_Mutation p.R170C 0.28 deleterious(0.01) possibly_damaging(0.496) TCGA-AF-A56N-01 19 49868846 49868846 G T DKKL1 Missense_Mutation p.E88D 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-AF-A56N-01 19 52222522 52222522 G A HAS1 Silent p.G213G 0.35 TCGA-AF-A56N-01 19 52942496 52942496 C T ZNF534 Nonsense_Mutation p.R608* 0.41 TCGA-AF-A56N-01 19 56466560 56466560 T C NLRP8 Missense_Mutation p.V379A 0.36 tolerated(1) benign(0.001) TCGA-AF-A56N-01 19 58231911 58231911 C A ZNF671 Nonsense_Mutation p.E515* 0.38 TCGA-AF-A56N-01 19 7585909 7585909 C T ZNF358 3'UTR 0.30 TCGA-AF-A56N-01 19 8563280 8563280 C T PRAM1 Missense_Mutation p.R471K 0.33 tolerated(0.12) benign(0.44) TCGA-AF-A56N-01 19 9362223 9362223 T C OR7E24 Silent p.F168F 0.32 TCGA-AF-A56N-01 1 11087282 11087282 C T MASP2 Missense_Mutation p.G574E 0.20 deleterious(0) probably_damaging(1) TCGA-AF-A56N-01 1 115258744 115258744 C T NRAS Missense_Mutation p.G13D 0.44 deleterious(0.05) benign(0.004) TCGA-AF-A56N-01 1 1168654 1168654 C T B3GALT6 3'UTR 0.29 TCGA-AF-A56N-01 1 142620880 142620880 T C RP11-417J8.6 RNA 0.20 TCGA-AF-A56N-01 1 151774970 151774970 G A LINGO4 Missense_Mutation p.R71C 0.46 deleterious(0) possibly_damaging(0.568) TCGA-AF-A56N-01 1 152276625 152276625 C T FLG Silent p.T3579T 0.38 TCGA-AF-A56N-01 1 157559037 157559037 C T FCRL4 Silent p.R88R 0.07 TCGA-AF-A56N-01 1 157668332 157668332 A G FCRL3 Missense_Mutation p.I47T 0.52 deleterious(0.04) probably_damaging(0.954) TCGA-AF-A56N-01 1 157805927 157805927 C T CD5L Missense_Mutation p.R25Q 0.42 deleterious(0.05) benign(0.415) TCGA-AF-A56N-01 1 160057639 160057639 G T KCNJ9 3'UTR 0.36 TCGA-AF-A56N-01 1 176759105 176759105 C T PAPPA2 Missense_Mutation p.R1626C 0.36 deleterious(0.02) benign(0.115) TCGA-AF-A56N-01 1 19018253 19018253 C T PAX7 Missense_Mutation p.R198W 0.24 deleterious(0.03) possibly_damaging(0.852) TCGA-AF-A56N-01 1 197029581 197029581 G T F13B Missense_Mutation p.F240L 0.43 tolerated(0.05) benign(0.443) TCGA-AF-A56N-01 1 214557034 214557034 G T PTPN14 Missense_Mutation p.P722T 0.53 tolerated(0.64) benign(0.031) TCGA-AF-A56N-01 1 221055671 221055671 T C HLX Missense_Mutation p.L313P 0.09 deleterious(0) probably_damaging(1) TCGA-AF-A56N-01 1 229661856 229661857 - C ABCB10 Frame_Shift_Ins p.I578Sfs*9 0.19 TCGA-AF-A56N-01 1 231155799 231155799 T C FAM89A Missense_Mutation p.K122R 0.07 tolerated(0.07) probably_damaging(0.987) TCGA-AF-A56N-01 1 2494639 2494639 C T TNFRSF14 Missense_Mutation p.A260V 0.47 tolerated(0.39) benign(0.012) TCGA-AF-A56N-01 1 26648386 26648386 G T AIM1L 3'UTR 0.41 TCGA-AF-A56N-01 1 33235932 33235932 G A KIAA1522 Silent p.S384S 0.43 TCGA-AF-A56N-01 1 40960600 40960600 G A ZFP69 Silent p.K150K 0.14 TCGA-AF-A56N-01 20 1162063 1162063 T G TMEM74B Missense_Mutation p.E67A 0.68 deleterious(0) probably_damaging(0.999) TCGA-AF-A56N-01 20 34240844 34240844 C T RBM12 Missense_Mutation p.G801S 0.65 tolerated(0.21) unknown(0) TCGA-AF-A56N-01 20 44004014 44004014 A G TP53TG5 Silent p.L145L 0.13 TCGA-AF-A56N-01 21 47419124 47419124 G T COL6A1 Missense_Mutation p.G578C 0.34 deleterious(0) probably_damaging(0.999) TCGA-AF-A56N-01 22 19770505 19770505 A C GNB1L 3'Flank 0.08 TCGA-AF-A56N-01 22 23011263 23011263 C T IGLV3-27 Missense_Mutation p.A109V 0.29 tolerated(0.48) benign(0.174) TCGA-AF-A56N-01 22 44527387 44527387 C A PARVB Missense_Mutation p.L166M 0.34 deleterious(0.02) probably_damaging(0.945) TCGA-AF-A56N-01 22 44602366 44602366 G T PARVG 3'UTR 0.35 TCGA-AF-A56N-01 22 50636901 50636901 G A TRABD Missense_Mutation p.A362T 0.44 tolerated(0.17) benign(0.011) TCGA-AF-A56N-01 2 111851324 111851324 C T ACOXL Intron 0.43 TCGA-AF-A56N-01 2 131797971 131797971 G A ARHGEF4 Silent p.E354E 0.35 TCGA-AF-A56N-01 2 141272229 141272229 G T LRP1B Missense_Mutation p.S2754R 0.38 possibly_damaging(0.637) TCGA-AF-A56N-01 2 144244941 144244941 G C ARHGAP15 Splice_Site p.X235_splice 0.03 TCGA-AF-A56N-01 2 152425855 152425855 C T NEB Missense_Mutation p.R5821H 0.48 probably_damaging(0.989) TCGA-AF-A56N-01 2 166011023 166011023 T A SCN3A Missense_Mutation p.Q440L 0.40 deleterious(0.01) possibly_damaging(0.888) TCGA-AF-A56N-01 2 167318912 167318912 A T SCN7A Missense_Mutation p.V357E 0.31 tolerated(0.48) benign(0.079) TCGA-AF-A56N-01 2 168100923 168100923 A C XIRP2 Missense_Mutation p.E1007D 0.36 probably_damaging(0.999) TCGA-AF-A56N-01 2 169417742 169417742 T G CERS6 Missense_Mutation p.L106R 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-AF-A56N-01 2 170219101 170219101 A T LRP2 5'UTR 0.33 TCGA-AF-A56N-01 2 179204444 179204444 C T OSBPL6 Nonsense_Mutation p.R314* 0.31 TCGA-AF-A56N-01 2 179430222 179430222 C G TTN Missense_Mutation p.Q26879H 0.42 TCGA-AF-A56N-01 2 20101637 20101637 G T TTC32 5'UTR 0.06 TCGA-AF-A56N-01 2 210678490 210678490 T A UNC80 Silent p.I375I 0.36 TCGA-AF-A56N-01 2 219691658 219691658 G A PRKAG3 Silent p.N387N 0.34 TCGA-AF-A56N-01 2 220252631 220252631 C A DNPEP 5'UTR 0.30 TCGA-AF-A56N-01 2 239033953 239033953 C A ESPNL Missense_Mutation p.P344T 0.04 deleterious(0.02) possibly_damaging(0.835) TCGA-AF-A56N-01 2 241663449 241663449 G A KIF1A Missense_Mutation p.R1421C 0.38 deleterious(0.04) benign(0.063) TCGA-AF-A56N-01 2 242035425 242035425 G A MTERFD2 Silent p.D378D 0.32 TCGA-AF-A56N-01 3 122419276 122419276 A G PARP14 Silent p.Q625Q 0.33 TCGA-AF-A56N-01 3 129034618 129034620 TTC - H1FX In_Frame_Del p.K42del 0.24 TCGA-AF-A56N-01 3 130098528 130098528 C A COL6A5 Missense_Mutation p.S312Y 0.38 deleterious(0) probably_damaging(0.956) TCGA-AF-A56N-01 3 134277130 134277130 T C CEP63 Silent p.N538N 0.04 TCGA-AF-A56N-01 3 170201138 170201138 G T SLC7A14 Silent p.V360V 0.38 TCGA-AF-A56N-01 3 184105266 184105266 G T CHRD Splice_Site p.X817_splice 0.40 TCGA-AF-A56N-01 3 196626631 196626631 C G SENP5 Missense_Mutation p.D536E 0.38 tolerated(0.06) probably_damaging(0.996) TCGA-AF-A56N-01 3 30713294 30713294 C T TGFBR2 Missense_Mutation p.R232W 0.04 deleterious(0.01) possibly_damaging(0.453) TCGA-AF-A56N-01 3 401964 401964 C T CHL1 Intron 0.37 TCGA-AF-A56N-01 3 46416033 46416033 C T CCR5 3'UTR 0.36 TCGA-AF-A56N-01 3 50147866 50147866 C T RBM5 Missense_Mutation p.P445S 0.34 tolerated(0.35) probably_damaging(0.979) TCGA-AF-A56N-01 3 67579582 67579582 C T SUCLG2 Silent p.Q85Q 0.38 TCGA-AF-A56N-01 3 71804208 71804208 C T GPR27 Silent p.V336V 0.49 TCGA-AF-A56N-01 3 77656978 77656978 A G ROBO2 Missense_Mutation p.K1072E 0.40 tolerated(0.41) benign(0.292) TCGA-AF-A56N-01 3 9422272 9422272 C T THUMPD3 Missense_Mutation p.S365F 0.31 deleterious(0.01) possibly_damaging(0.582) TCGA-AF-A56N-01 4 110932453 110932453 T A EGF Missense_Mutation p.S1156T 0.35 tolerated_low_confidence(0.3) benign(0.007) TCGA-AF-A56N-01 4 151177390 151177390 C - DCLK2 Frame_Shift_Del p.R782Efs*135 0.14 TCGA-AF-A56N-01 4 166021817 166021817 C T TMEM192 Silent p.R134R 0.80 TCGA-AF-A56N-01 4 88732898 88732898 G A IBSP Missense_Mutation p.E264K 0.76 deleterious(0) probably_damaging(1) TCGA-AF-A56N-01 4 947132 947132 T A TMEM175 Missense_Mutation p.F206Y 0.70 deleterious(0.05) benign(0.341) TCGA-AF-A56N-01 5 112175136 112175137 - AGCTG APC Frame_Shift_Ins p.D1285Lfs*5 0.67 TCGA-AF-A56N-01 5 134871098 134871098 C T NEUROG1 Missense_Mutation p.V95I 0.45 tolerated(0.2) possibly_damaging(0.486) TCGA-AF-A56N-01 5 145562164 145562164 A G LARS 5'UTR 0.33 TCGA-AF-A56N-01 5 85578431 85578431 C G NBPF22P RNA 0.42 TCGA-AF-A56N-01 6 107419785 107419785 G A BEND3 Silent p.P70P 0.22 TCGA-AF-A56N-01 6 131973715 131973715 G C ENPP3 Missense_Mutation p.G104A 0.33 deleterious(0) probably_damaging(1) TCGA-AF-A56N-01 6 132874299 132874299 G T TAAR8 Missense_Mutation p.W156C 0.41 deleterious(0) probably_damaging(0.999) TCGA-AF-A56N-01 6 149773833 149773833 C A ZC3H12D Missense_Mutation p.G236C 0.31 deleterious(0) probably_damaging(1) TCGA-AF-A56N-01 6 160240311 160240311 C T PNLDC1 Missense_Mutation p.R476W 0.31 deleterious(0) probably_damaging(0.969) TCGA-AF-A56N-01 6 16327180 16327180 G A ATXN1 Silent p.Y454Y 0.37 TCGA-AF-A56N-01 6 170594709 170594709 C A DLL1 Missense_Mutation p.Q270H 0.17 tolerated(0.08) probably_damaging(0.971) TCGA-AF-A56N-01 6 29430915 29430915 C A OR2H1 3'UTR 0.38 TCGA-AF-A56N-01 6 30954603 30954603 G A MUC21 Silent p.T217T 0.42 TCGA-AF-A56N-01 6 32975256 32975256 G A HLA-DOA Missense_Mutation p.R149C 0.43 tolerated(0.13) probably_damaging(0.959) TCGA-AF-A56N-01 6 637729 637729 A G EXOC2 Silent p.N30N 0.46 TCGA-AF-A56N-01 7 114299709 114299709 G A FOXP2 Missense_Mutation p.R568H 0.31 deleterious(0) possibly_damaging(0.482) TCGA-AF-A56N-01 7 143701562 143701562 C A OR6B1 Missense_Mutation p.A158E 0.07 deleterious(0.01) possibly_damaging(0.617) TCGA-AF-A56N-01 7 149521612 149521612 C T SSPO RNA 0.35 TCGA-AF-A56N-01 7 150648149 150648149 C T KCNH2 Missense_Mutation p.G669S 0.37 deleterious(0.03) possibly_damaging(0.831) TCGA-AF-A56N-01 7 150778490 150778490 G A TMUB1 3'UTR 0.33 TCGA-AF-A56N-01 7 151478296 151478296 G T PRKAG2 Silent p.P136P 0.29 TCGA-AF-A56N-01 7 30704775 30704775 G A CRHR2 Missense_Mutation p.H179Y 0.47 deleterious(0) probably_damaging(0.998) TCGA-AF-A56N-01 7 34971014 34971014 G C DPY19L1 3'UTR 0.29 TCGA-AF-A56N-01 7 47970858 47970858 C T PKD1L1 Missense_Mutation p.V194I 0.34 tolerated(0.34) benign(0.001) TCGA-AF-A56N-01 7 4827386 4827386 C T AP5Z1 Missense_Mutation p.A478V 0.37 tolerated(0.07) probably_damaging(0.979) TCGA-AF-A56N-01 7 4901476 4901477 - CCACCGCGACCTTCACGTCCCCCC PAPOLB 5'UTR 0.09 TCGA-AF-A56N-01 7 6661918 6661918 G A ZNF853 Silent p.A432A 0.48 TCGA-AF-A56N-01 7 72419873 72419873 C G POM121 3'UTR 0.36 TCGA-AF-A56N-01 7 72419890 72419890 A T POM121 3'UTR 0.34 TCGA-AF-A56N-01 7 94298447 94298447 G T PEG10 3'UTR 0.28 TCGA-AF-A56N-01 8 104427572 104427572 T G DCAF13 Silent p.T118T 0.33 TCGA-AF-A56N-01 8 110980168 110980168 T C KCNV1 3'UTR 0.41 TCGA-AF-A56N-01 8 11301959 11301959 G A FAM167A 5'UTR 0.53 TCGA-AF-A56N-01 8 144998669 144998669 C G PLEC Missense_Mutation p.A1947P 0.35 unknown(0) TCGA-AF-A56N-01 8 145639162 145639162 G A SLC39A4 Missense_Mutation p.P464L 0.31 deleterious(0.02) benign(0.146) TCGA-AF-A56N-01 8 146033318 146033318 C T ZNF517 Silent p.H339H 0.35 TCGA-AF-A56N-01 8 35624436 35624436 G A UNC5D Missense_Mutation p.R777H 0.13 tolerated(1) possibly_damaging(0.748) TCGA-AF-A56N-01 8 67064789 67064789 C A TRIM55 Missense_Mutation p.P388H 0.38 deleterious(0) benign(0.376) TCGA-AF-A56N-01 8 72965991 72965991 G A TRPA1 Silent p.D547D 0.37 TCGA-AF-A56N-01 8 92972382 92972382 C A RUNX1T1 3'UTR 0.32 TCGA-AF-A56N-01 9 113128793 113128793 G T SVEP1 3'UTR 0.36 TCGA-AF-A56N-01 9 121929489 121929489 A G BRINP1 Missense_Mutation p.F720S 0.38 deleterious(0) probably_damaging(0.91) TCGA-AF-A56N-01 9 125391522 125391522 C T OR1B1 Missense_Mutation p.R98H 0.12 deleterious(0.05) benign(0.001) TCGA-AF-A56N-01 9 139639636 139639636 G A LCN6 Missense_Mutation p.T133I 0.38 tolerated(0.07) possibly_damaging(0.893) TCGA-AF-A56N-01 9 140109069 140109069 C - NDOR1 Frame_Shift_Del p.H258Mfs*134 0.13 TCGA-AF-A56N-01 9 19346310 19346310 T G DENND4C Silent p.L1132L 0.43 TCGA-AF-A56N-01 9 2829945 2829945 A C KIAA0020 Missense_Mutation p.S227R 0.35 deleterious(0.01) benign(0.181) TCGA-AF-A56N-01 9 33443775 33443775 C T AQP3 Missense_Mutation p.G75D 0.29 deleterious(0) probably_damaging(0.999) TCGA-AF-A56N-01 9 86276729 86276729 T A UBQLN1 Missense_Mutation p.E581D 0.24 deleterious(0.03) probably_damaging(0.994) TCGA-AF-A56N-01 9 98691038 98691038 G C ERCC6L2 Missense_Mutation p.G559A 0.24 tolerated(0.06) possibly_damaging(0.889) TCGA-AF-A56N-01 X 106840571 106840571 C T FRMPD3 Missense_Mutation p.R521C 0.35 deleterious(0.02) possibly_damaging(0.791) TCGA-AF-A56N-01 X 109416520 109416520 C A TMEM164 Missense_Mutation p.D245E 0.16 deleterious(0) probably_damaging(1) TCGA-AF-A56N-01 X 135314078 135314078 C T MAP7D3 Silent p.S346S 0.24 TCGA-AF-A56N-01 X 153208486 153208486 C T RENBP Missense_Mutation p.E170K 0.24 tolerated(0.49) benign(0.008) TCGA-AF-A56N-01 X 153216294 153216294 T C HCFC1 Silent p.P1891P 0.26 TCGA-AF-A56N-01 X 153609544 153609544 G T EMD Missense_Mutation p.G251V 0.25 deleterious(0.01) probably_damaging(0.92) TCGA-AF-A56N-01 X 21488922 21488922 C T CNKSR2 Silent p.H186H 0.46 TCGA-AF-A56N-01 X 48762728 48762728 G A SLC35A2 Missense_Mutation p.A153V 0.39 deleterious(0) probably_damaging(0.995) TCGA-AF-A56N-01 X 52677357 52677357 G T SSX7 Nonsense_Mutation p.C140* 0.25 TCGA-AF-A56N-01 X 69902610 69902610 C T TEX11 Missense_Mutation p.G372E 0.29 deleterious(0.01) probably_damaging(0.953) TCGA-AF-A56N-01 X 70678097 70678097 G A TAF1 Missense_Mutation p.D1669N 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.698) TCGA-AF-A56N-01 X 72900889 72900889 G T CHIC1 3'UTR 0.09 TCGA-AF-A56N-01 X 8433986 8433986 C T VCX3B Silent p.H101H 0.24 TCGA-AG-3591-01 10 6257194 6257194 C T PFKFB3 Silent p.V71V 0.31 TCGA-AG-3591-01 10 69366623 69366623 C T CTNNA3 Missense_Mutation p.R95H 0.34 deleterious(0.02) possibly_damaging(0.812) TCGA-AG-3591-01 10 83635500 83635500 C T NRG3 Missense_Mutation p.T135M 0.60 tolerated(0.16) benign(0.004) TCGA-AG-3591-01 11 6816774 6816774 G A OR6A2 Missense_Mutation p.L56F 0.43 deleterious(0) probably_damaging(0.999) TCGA-AG-3591-01 11 71730653 71730653 A G NUMA1 Silent p.P157P 0.10 TCGA-AG-3591-01 11 73009275 73009275 G A P2RY6 3'UTR 0.70 TCGA-AG-3591-01 12 105445978 105445978 G A ALDH1L2 Silent p.S475S 0.51 TCGA-AG-3591-01 12 122691949 122691949 C T B3GNT4 3'UTR 0.45 TCGA-AG-3591-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.69 deleterious(0) possibly_damaging(0.479) TCGA-AG-3591-01 12 48866793 48866793 G A ANP32D Missense_Mutation p.E116K 0.46 tolerated(1) benign(0.001) TCGA-AG-3591-01 12 8688784 8688784 C A CLEC4E Missense_Mutation p.K130N 0.26 tolerated(0.33) benign(0.167) TCGA-AG-3591-01 12 88379685 88379685 C A C12orf50 Silent p.T356T 0.23 TCGA-AG-3591-01 13 102235609 102235609 G A ITGBL1 Silent p.P257P 0.23 TCGA-AG-3591-01 13 108886237 108886237 A G ABHD13 3'UTR 0.26 TCGA-AG-3591-01 13 114507921 114507921 C T TMEM255B Nonsense_Mutation p.Q245* 0.43 TCGA-AG-3591-01 13 39263864 39263864 G A FREM2 Missense_Mutation p.V795M 0.20 deleterious(0) possibly_damaging(0.551) TCGA-AG-3591-01 13 77837803 77837803 T C MYCBP2 Missense_Mutation p.K480R 0.10 possibly_damaging(0.772) TCGA-AG-3591-01 14 106667613 106667613 C T IGHV3-20 Missense_Mutation p.A107T 0.31 tolerated_low_confidence(0.37) benign(0.011) TCGA-AG-3591-01 14 45475265 45475265 C T FAM179B Missense_Mutation p.S900L 0.19 deleterious(0.02) possibly_damaging(0.725) TCGA-AG-3591-01 15 41276392 41276392 C T INO80 Intron 0.27 TCGA-AG-3591-01 15 48736795 48736795 C A FBN1 Missense_Mutation p.G1994W 0.36 probably_damaging(0.997) TCGA-AG-3591-01 15 73617661 73617661 T C HCN4 Missense_Mutation p.E572G 0.10 deleterious(0) unknown(0) TCGA-AG-3591-01 15 74287112 74287112 A G PML 5'UTR 0.37 TCGA-AG-3591-01 16 1291317 1291317 C T TPSAB1 Silent p.C75C 0.33 TCGA-AG-3591-01 16 30515569 30515569 C T ITGAL Missense_Mutation p.P740L 0.32 tolerated(0.08) benign(0.009) TCGA-AG-3591-01 16 51172618 51172618 G A SALL1 Missense_Mutation p.T1172M 0.28 deleterious(0) possibly_damaging(0.715) TCGA-AG-3591-01 16 7568374 7568374 G A RBFOX1 Missense_Mutation p.V105I 0.29 tolerated(1) probably_damaging(0.996) TCGA-AG-3591-01 17 30551747 30551747 C T RHOT1 Nonsense_Mutation p.R691* 0.25 TCGA-AG-3591-01 17 3195670 3195670 T C OR3A1 Silent p.L69L 0.41 TCGA-AG-3591-01 17 33749231 33749231 C - SLFN12 Frame_Shift_Del p.V273Cfs*11 0.20 TCGA-AG-3591-01 17 65026733 65026733 C T CACNG4 Silent p.G199G 0.30 TCGA-AG-3591-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.86 deleterious(0) probably_damaging(1) TCGA-AG-3591-01 17 76171674 76171674 T A TK1 Missense_Mutation p.E110V 0.08 deleterious(0) probably_damaging(0.974) TCGA-AG-3591-01 18 580538 580538 G A CETN1 Missense_Mutation p.G44R 0.30 deleterious(0.05) possibly_damaging(0.855) TCGA-AG-3591-01 19 19240999 19240999 C T TMEM161A Silent p.V187V 0.11 TCGA-AG-3591-01 19 36398439 36398439 G A TYROBP Silent p.I46I 0.20 TCGA-AG-3591-01 19 3905608 3905608 G A ATCAY Missense_Mutation p.D105N 0.37 tolerated(0.05) probably_damaging(1) TCGA-AG-3591-01 19 49209131 49209131 G A FUT2 3'UTR 0.60 TCGA-AG-3591-01 19 7833732 7833732 G A CLEC4M Missense_Mutation p.R353Q 0.39 tolerated(0.32) benign(0.016) TCGA-AG-3591-01 1 169588417 169588417 C G SELP Missense_Mutation p.R15T 0.43 tolerated(0.18) benign(0.01) TCGA-AG-3591-01 1 17083314 17083314 C T MST1L RNA 0.27 TCGA-AG-3591-01 1 186097281 186097281 G A HMCN1 Silent p.L4254L 0.30 TCGA-AG-3591-01 1 201358343 201358343 C T LAD1 Missense_Mutation p.D43N 0.58 tolerated(0.06) benign(0.287) TCGA-AG-3591-01 1 215848829 215848829 G A USH2A Missense_Mutation p.H4142Y 0.33 benign(0.308) TCGA-AG-3591-01 1 22199913 22199913 C T HSPG2 Missense_Mutation p.A1250T 0.18 possibly_damaging(0.795) TCGA-AG-3591-01 1 248084850 248084850 C T OR2T8 Silent p.C177C 0.43 TCGA-AG-3591-01 1 248436586 248436586 G A OR2T33 Silent p.C177C 0.44 TCGA-AG-3591-01 1 33161227 33161227 C T SYNC Missense_Mutation p.E158K 0.63 tolerated(0.77) benign(0.004) TCGA-AG-3591-01 1 35370348 35370348 C T DLGAP3 Missense_Mutation p.G213S 0.62 tolerated(0.64) benign(0.017) TCGA-AG-3591-01 1 39818869 39818869 C T MACF1 Missense_Mutation p.P1735L 0.12 benign(0.002) TCGA-AG-3591-01 1 45793363 45793363 C T HPDL Silent p.H181H 0.28 TCGA-AG-3591-01 1 94502328 94502328 G A ABCA4 Missense_Mutation p.T1277M 0.31 deleterious(0.03) probably_damaging(0.945) TCGA-AG-3591-01 20 44639652 44639652 C T MMP9 Silent p.F204F 0.34 TCGA-AG-3591-01 20 56285573 56285573 C T PMEPA1 5'Flank 0.20 TCGA-AG-3591-01 21 45947184 45947184 G A TSPEAR Silent p.I380I 0.23 TCGA-AG-3591-01 21 48068465 48068465 C T PRMT2 Silent p.I141I 0.59 TCGA-AG-3591-01 22 30032800 30032800 A G NF2 Missense_Mutation p.T59A 0.56 deleterious(0.03) possibly_damaging(0.687) TCGA-AG-3591-01 22 38379610 38379610 C G SOX10 Missense_Mutation p.G61A 0.30 tolerated(0.74) benign(0.003) TCGA-AG-3591-01 22 44022393 44022393 C T EFCAB6 Missense_Mutation p.R800Q 0.25 tolerated(0.21) benign(0.148) TCGA-AG-3591-01 2 1093900 1093900 C T SNTG2 Missense_Mutation p.R77C 0.36 tolerated(0.07) benign(0.094) TCGA-AG-3591-01 2 128342419 128342419 C T MYO7B Missense_Mutation p.P541S 0.41 tolerated(0.15) probably_damaging(1) TCGA-AG-3591-01 2 137872777 137872777 G A THSD7B Missense_Mutation p.G428E 0.18 deleterious(0.05) benign(0.012) TCGA-AG-3591-01 2 138000078 138000079 - A THSD7B Frame_Shift_Ins p.D737Rfs*9 0.31 TCGA-AG-3591-01 2 141458023 141458023 T G LRP1B Missense_Mutation p.S2199R 0.23 benign(0.307) TCGA-AG-3591-01 2 176964887 176964887 G A HOXD12 Missense_Mutation p.A120T 0.22 tolerated(0.22) benign(0.003) TCGA-AG-3591-01 2 182346368 182346368 C T ITGA4 Silent p.T266T 0.16 TCGA-AG-3591-01 2 220342431 220342431 G A SPEG Missense_Mutation p.E1584K 0.48 benign(0.048) TCGA-AG-3591-01 2 232263034 232263034 G A B3GNT7 Missense_Mutation p.D202N 0.52 deleterious(0) probably_damaging(1) TCGA-AG-3591-01 2 233633511 233633511 G A KCNJ13 Missense_Mutation p.A158V 0.46 deleterious(0) probably_damaging(1) TCGA-AG-3591-01 2 29295550 29295550 C T C2orf71 Silent p.Q526Q 0.47 TCGA-AG-3591-01 2 30748550 30748550 A T LCLAT1 Missense_Mutation p.M70L 0.44 tolerated(0.22) benign(0.01) TCGA-AG-3591-01 2 61275676 61275676 C T PEX13 Missense_Mutation p.A328V 0.48 deleterious(0.02) benign(0.379) TCGA-AG-3591-01 2 71163151 71163151 C T ATP6V1B1 Nonsense_Mutation p.R23* 0.46 TCGA-AG-3591-01 3 1189641 1189641 G C CNTN6 5'UTR 0.44 TCGA-AG-3591-01 3 122277303 122277306 TGCT GCC PARP9 Frame_Shift_Del p.A10Qfs*65 0.35 TCGA-AG-3591-01 3 133099187 133099187 G A TMEM108 Missense_Mutation p.R211Q 0.51 deleterious_low_confidence(0.03) probably_damaging(0.986) TCGA-AG-3591-01 3 195711055 195711055 G A SDHAP1 RNA 0.05 TCGA-AG-3591-01 3 3888841 3888841 C A LRRN1 3'UTR 0.24 TCGA-AG-3591-01 3 42740217 42740217 G A HHATL Missense_Mutation p.P156S 0.38 tolerated(0.05) probably_damaging(1) TCGA-AG-3591-01 3 48696383 48696383 G A CELSR3 Nonsense_Mutation p.R1229* 0.51 TCGA-AG-3591-01 3 49720011 49720011 C T APEH Silent p.H575H 0.20 TCGA-AG-3591-01 3 50225525 50225525 C T SEMA3F Missense_Mutation p.R779W 0.54 deleterious(0) probably_damaging(0.991) TCGA-AG-3591-01 3 52394054 52394054 C T DNAH1 Silent p.N1510N 0.40 TCGA-AG-3591-01 4 110670665 110670665 C T CFI Missense_Mutation p.R345Q 0.40 tolerated(0.53) benign(0.002) TCGA-AG-3591-01 4 162306973 162306973 G A FSTL5 Nonsense_Mutation p.R824* 0.32 TCGA-AG-3591-01 4 2045693 2045693 G A C4orf48 3'Flank 0.77 TCGA-AG-3591-01 4 67952 67952 T A Z95704.1 3'Flank 0.30 TCGA-AG-3591-01 4 73003804 73003804 G C NPFFR2 Missense_Mutation p.G228R 0.30 deleterious(0) probably_damaging(1) TCGA-AG-3591-01 4 77305418 77305418 C T CCDC158 Silent p.E183E 0.51 TCGA-AG-3591-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.41 TCGA-AG-3591-01 5 139231286 139231286 G A NRG2 Missense_Mutation p.R559W 0.48 deleterious(0) probably_damaging(1) TCGA-AG-3591-01 5 140237243 140237243 G A PCDHA10 Missense_Mutation p.R537H 0.62 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-AG-3591-01 5 157065360 157065360 A C SOX30 Missense_Mutation p.I586M 0.37 tolerated(0.21) benign(0.03) TCGA-AG-3591-01 5 178416027 178416027 C T GRM6 Silent p.A421A 0.21 TCGA-AG-3591-01 5 179263677 179263677 G A SQSTM1 3'UTR 0.44 TCGA-AG-3591-01 5 36684084 36684084 G A SLC1A3 Missense_Mutation p.A470T 0.48 deleterious(0.02) probably_damaging(0.987) TCGA-AG-3591-01 5 66480154 66480154 G A CD180 Missense_Mutation p.R173W 0.57 deleterious(0) possibly_damaging(0.527) TCGA-AG-3591-01 6 110301081 110301081 G A GPR6 Missense_Mutation p.A256T 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-AG-3591-01 6 111336990 111336990 G T RPF2 Missense_Mutation p.R176L 0.54 deleterious(0) benign(0.293) TCGA-AG-3591-01 6 161152837 161152837 C T PLG Missense_Mutation p.T500M 0.53 tolerated(0.13) possibly_damaging(0.767) TCGA-AG-3591-01 6 170105437 170105437 A G C6orf120 3'UTR 0.10 TCGA-AG-3591-01 6 28121070 28121070 G C ZKSCAN8 Missense_Mutation p.V338L 0.38 tolerated(0.11) benign(0.352) TCGA-AG-3591-01 7 107115927 107115927 T C GPR22 3'UTR 0.27 TCGA-AG-3591-01 7 2740363 2740363 G A AMZ1 Missense_Mutation p.R93Q 0.20 tolerated(0.17) probably_damaging(0.994) TCGA-AG-3591-01 7 92732105 92732105 A G SAMD9 Silent p.A1102A 0.17 TCGA-AG-3591-01 8 124822701 124822701 T G FAM91A1 Intron 0.18 TCGA-AG-3591-01 8 53569436 53569436 G A RB1CC1 Nonsense_Mutation p.Q985* 0.28 TCGA-AG-3591-01 9 108425291 108425291 C T TAL2 3'UTR 0.55 TCGA-AG-3591-01 9 127764259 127764259 G A SCAI Missense_Mutation p.R400C 0.45 deleterious(0.03) probably_damaging(0.93) TCGA-AG-3591-01 9 4665073 4665073 A G PPAPDC2 3'UTR 0.49 TCGA-AG-3591-01 X 101970212 101970212 G A GPRASP2 Missense_Mutation p.V139M 0.76 tolerated(1) benign(0.001) TCGA-AG-3591-01 X 32404497 32404497 G A DMD Missense_Mutation p.T1535M 0.48 probably_damaging(0.978) TCGA-AG-3591-01 X 78012038 78012038 C T LPAR4 3'UTR 0.28 TCGA-AG-3591-01 X 91133475 91133475 T A PCDH11X Missense_Mutation p.L746I 0.35 deleterious(0) probably_damaging(0.999) TCGA-AG-3592-01 10 102893975 102893975 G A TLX1 Silent p.P204P 0.20 TCGA-AG-3592-01 10 118896039 118896039 C T VAX1 Missense_Mutation p.V125M 0.24 tolerated(0.06) unknown(0) TCGA-AG-3592-01 10 125506513 125506513 G A CPXM2 Missense_Mutation p.R680C 0.27 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 10 1284351 1284351 G A ADARB2 Missense_Mutation p.R402W 0.29 deleterious(0) possibly_damaging(0.88) TCGA-AG-3592-01 10 135113548 135113548 T G TUBGCP2 Missense_Mutation p.N74H 0.48 tolerated(0.06) probably_damaging(0.985) TCGA-AG-3592-01 10 14861824 14861824 T A CDNF 3'Flank 0.23 TCGA-AG-3592-01 10 17865187 17865187 G A MRC1L1 Missense_Mutation p.R59Q 0.14 possibly_damaging(0.559) TCGA-AG-3592-01 10 18828425 18828425 C G CACNB2 Missense_Mutation p.H585Q 0.21 tolerated(0.1) possibly_damaging(0.52) TCGA-AG-3592-01 10 25861612 25861612 C T GPR158 Nonsense_Mutation p.R517* 0.26 TCGA-AG-3592-01 10 48389275 48389275 G A RBP3 Missense_Mutation p.R535C 0.56 deleterious(0) possibly_damaging(0.898) TCGA-AG-3592-01 10 50535032 50535032 T C C10orf71 3'UTR 0.20 TCGA-AG-3592-01 10 56077118 56077118 T A PCDH15 Silent p.P263P 0.18 TCGA-AG-3592-01 10 74100900 74100900 G A DNAJB12 Silent p.S196S 0.32 TCGA-AG-3592-01 10 8100462 8100462 G A GATA3 Missense_Mutation p.A146T 0.46 tolerated(0.11) benign(0.006) TCGA-AG-3592-01 11 1027279 1027279 G A MUC6 Silent p.N740N 0.44 TCGA-AG-3592-01 11 108115524 108115524 G C ATM Missense_Mutation p.K224N 0.30 deleterious(0.02) benign(0.053) TCGA-AG-3592-01 11 122647849 122647849 G A UBASH3B Silent p.S111S 0.06 TCGA-AG-3592-01 11 122742039 122742039 A C CRTAM Silent p.R372R 0.21 TCGA-AG-3592-01 11 128774341 128774341 G A C11orf45 Nonsense_Mutation p.Q41* 0.46 TCGA-AG-3592-01 11 130748405 130748405 T C SNX19 Missense_Mutation p.D964G 0.15 tolerated(0.42) benign(0.003) TCGA-AG-3592-01 11 15243130 15243130 G T INSC Silent p.L356L 0.22 TCGA-AG-3592-01 11 22276946 22276946 C T ANO5 Nonsense_Mutation p.R404* 0.25 TCGA-AG-3592-01 11 377173 377173 C T B4GALNT4 Missense_Mutation p.R684C 0.12 deleterious(0) unknown(0) TCGA-AG-3592-01 11 379959 379959 T C B4GALNT4 Missense_Mutation p.V861A 0.09 tolerated(0.06) unknown(0) TCGA-AG-3592-01 11 40136761 40136761 G T LRRC4C Missense_Mutation p.A361E 0.35 tolerated(1) benign(0.021) TCGA-AG-3592-01 11 4608296 4608296 G A OR52I2 Missense_Mutation p.R85Q 0.05 deleterious(0) benign(0.162) TCGA-AG-3592-01 11 4615444 4615444 G A OR52I1 Missense_Mutation p.R59Q 0.11 deleterious(0) benign(0.008) TCGA-AG-3592-01 11 4622302 4622302 C G TRIM68 Missense_Mutation p.D288H 0.21 tolerated(0.06) benign(0.227) TCGA-AG-3592-01 11 46717234 46717234 G A ARHGAP1 Missense_Mutation p.R69W 0.23 deleterious(0.01) benign(0.313) TCGA-AG-3592-01 11 47650568 47650568 G T MTCH2 Silent p.I190I 0.11 TCGA-AG-3592-01 11 5345540 5345540 G A OR51B2 5'UTR 0.07 TCGA-AG-3592-01 11 56058150 56058150 C T OR8H1 Missense_Mutation p.R130H 0.44 tolerated(0.86) benign(0) TCGA-AG-3592-01 11 56058172 56058172 C T OR8H1 Missense_Mutation p.V123I 0.11 deleterious(0.03) benign(0.032) TCGA-AG-3592-01 11 57004306 57004306 C T APLNR Missense_Mutation p.R58Q 0.23 tolerated(0.43) benign(0.064) TCGA-AG-3592-01 11 58919526 58919526 C T FAM111A Missense_Mutation p.R129C 0.38 tolerated(0.24) benign(0.001) TCGA-AG-3592-01 11 61017458 61017458 C T PGA5 Missense_Mutation p.P330L 0.36 deleterious(0.01) probably_damaging(0.956) TCGA-AG-3592-01 11 71146860 71146860 A G DHCR7 Missense_Mutation p.V330A 0.09 deleterious(0.01) benign(0.395) TCGA-AG-3592-01 11 76831910 76831910 G A CAPN5 Missense_Mutation p.G481D 0.45 deleterious(0) possibly_damaging(0.904) TCGA-AG-3592-01 11 78523275 78523275 C T TENM4 Missense_Mutation p.D624N 0.20 tolerated(0.08) benign(0.418) TCGA-AG-3592-01 11 9530327 9530327 C T ZNF143 Missense_Mutation p.R437W 0.37 deleterious(0) probably_damaging(0.997) TCGA-AG-3592-01 12 100930725 100930725 G C NR1H4 Splice_Site p.X288_splice 0.06 TCGA-AG-3592-01 12 124411309 124411309 G A DNAH10 Missense_Mutation p.R3898Q 0.25 benign(0.025) TCGA-AG-3592-01 12 130907079 130907079 G A RIMBP2 Missense_Mutation p.R797W 0.22 deleterious(0) probably_damaging(0.976) TCGA-AG-3592-01 12 133158379 133158379 C T FBRSL1 Silent p.H698H 0.19 TCGA-AG-3592-01 12 21615791 21615791 C A PYROXD1 Missense_Mutation p.Q371K 0.16 deleterious(0.03) benign(0.028) TCGA-AG-3592-01 12 21712069 21712069 G A GYS2 Nonsense_Mutation p.R422* 0.53 TCGA-AG-3592-01 12 27842038 27842038 C T PPFIBP1 Missense_Mutation p.H869Y 0.50 deleterious(0) probably_damaging(0.996) TCGA-AG-3592-01 12 47628900 47628900 G T PCED1B Silent p.V18V 0.30 TCGA-AG-3592-01 12 49948272 49948272 C T KCNH3 Missense_Mutation p.R691C 0.20 deleterious(0.01) possibly_damaging(0.608) TCGA-AG-3592-01 12 5025544 5025544 T C KCNA1 3'UTR 0.14 TCGA-AG-3592-01 12 5154373 5154373 C T KCNA5 Missense_Mutation p.R354W 0.23 deleterious(0) probably_damaging(0.995) TCGA-AG-3592-01 12 57389630 57389630 A T GPR182 Missense_Mutation p.T213S 0.33 tolerated(0.34) benign(0.014) TCGA-AG-3592-01 12 58002407 58002407 G A DTX3 Silent p.A285A 0.53 TCGA-AG-3592-01 12 64827364 64827364 C T XPOT Silent p.S811S 0.30 TCGA-AG-3592-01 12 78511988 78511988 C T NAV3 Missense_Mutation p.S984L 0.16 deleterious(0) benign(0.236) TCGA-AG-3592-01 12 80928704 80928704 C G PTPRQ Missense_Mutation p.A954G 0.26 tolerated(0.37) benign(0.096) TCGA-AG-3592-01 12 85450009 85450009 A C LRRIQ1 Missense_Mutation p.M480L 0.21 tolerated(0.31) benign(0.004) TCGA-AG-3592-01 12 85517935 85517935 C T LRRIQ1 Silent p.H1215H 0.53 TCGA-AG-3592-01 12 9318663 9318663 T A PZP Missense_Mutation p.E748V 0.29 deleterious(0) possibly_damaging(0.856) TCGA-AG-3592-01 13 111176040 111176040 T C RAB20 Missense_Mutation p.K226R 0.29 tolerated(0.31) benign(0.006) TCGA-AG-3592-01 13 115070475 115070475 G T UPF3A 3'UTR 0.33 TCGA-AG-3592-01 13 25157681 25157681 G A RP11-556N21.1 RNA 0.35 TCGA-AG-3592-01 13 30857795 30857795 G A KATNAL1 Silent p.C40C 0.04 TCGA-AG-3592-01 13 36158044 36158044 G T NBEA Missense_Mutation p.A2349S 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-AG-3592-01 13 36167283 36167283 T C NBEA Intron 0.44 TCGA-AG-3592-01 13 37678796 37678796 G A CSNK1A1L Missense_Mutation p.R200C 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AG-3592-01 13 39422606 39422606 G C FREM2 Missense_Mutation p.D2060H 0.44 deleterious(0.01) probably_damaging(1) TCGA-AG-3592-01 13 39918158 39918158 G A LHFP Missense_Mutation p.T173M 0.14 tolerated(0.11) probably_damaging(0.998) TCGA-AG-3592-01 13 42442613 42442613 G A VWA8 Missense_Mutation p.R361C 0.14 deleterious(0.01) benign(0.022) TCGA-AG-3592-01 13 43787983 43787983 C T ENOX1 3'UTR 0.48 TCGA-AG-3592-01 13 58299162 58299162 T G PCDH17 Missense_Mutation p.L1072V 0.10 tolerated_low_confidence(0.26) benign(0.003) TCGA-AG-3592-01 13 75936170 75936170 G C TBC1D4 Missense_Mutation p.L358V 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-AG-3592-01 13 79189693 79189693 C T RNF219 3'UTR 0.13 TCGA-AG-3592-01 13 88327732 88327732 T A SLITRK5 Missense_Mutation p.V30E 0.15 tolerated(0.28) benign(0.053) TCGA-AG-3592-01 13 95121153 95121153 C T DCT Missense_Mutation p.A148T 0.45 deleterious(0) possibly_damaging(0.711) TCGA-AG-3592-01 13 99114150 99114150 C A STK24 Nonsense_Mutation p.E323* 0.05 TCGA-AG-3592-01 13 99114151 99114151 C A STK24 Silent p.A322A 0.05 TCGA-AG-3592-01 14 104578914 104578914 C G ASPG 3'UTR 0.45 TCGA-AG-3592-01 14 105930426 105930426 C T MTA1 Silent p.N378N 0.77 TCGA-AG-3592-01 14 24528605 24528605 G A LRRC16B Missense_Mutation p.G585R 0.71 deleterious(0) probably_damaging(0.997) TCGA-AG-3592-01 14 52194845 52194845 C T FRMD6 3'UTR 0.71 TCGA-AG-3592-01 14 64681099 64681099 T A SYNE2 Missense_Mutation p.I6415N 0.27 probably_damaging(1) TCGA-AG-3592-01 14 70712896 70712896 G T ADAM21P1 RNA 0.62 TCGA-AG-3592-01 14 70925698 70925698 C A ADAM21 Silent p.I494I 0.11 TCGA-AG-3592-01 14 86093382 86093382 C A FLRT2 3'UTR 0.18 TCGA-AG-3592-01 14 89168956 89168956 C A EML5 Missense_Mutation p.R691L 0.31 deleterious(0) probably_damaging(0.994) TCGA-AG-3592-01 14 94770709 94770709 T A SERPINA6 3'UTR 0.70 TCGA-AG-3592-01 15 22383070 22383070 G C OR4N4 Missense_Mutation p.V200L 0.09 tolerated(0.1) possibly_damaging(0.702) TCGA-AG-3592-01 15 28096595 28096595 G A OCA2 Silent p.H757H 0.20 TCGA-AG-3592-01 15 29346694 29346694 G A APBA2 Missense_Mutation p.G203R 0.34 deleterious_low_confidence(0) benign(0.081) TCGA-AG-3592-01 15 42019398 42019398 G A MGA Missense_Mutation p.E1151K 0.35 deleterious(0) probably_damaging(0.978) TCGA-AG-3592-01 15 42641645 42641645 A C GANC Missense_Mutation p.Q828P 0.33 benign(0.397) TCGA-AG-3592-01 15 66025103 66025103 C T DENND4A Missense_Mutation p.R365Q 0.23 deleterious(0) probably_damaging(0.996) TCGA-AG-3592-01 15 68937625 68937625 G A CORO2B Missense_Mutation p.V48I 0.55 deleterious(0.01) possibly_damaging(0.581) TCGA-AG-3592-01 15 76019732 76019732 G A ODF3L1 Missense_Mutation p.A226T 0.38 tolerated(0.52) benign(0.016) TCGA-AG-3592-01 15 78453988 78453988 G T IDH3A Missense_Mutation p.D119Y 0.12 deleterious(0) possibly_damaging(0.781) TCGA-AG-3592-01 16 10031980 10031980 G A GRIN2A Silent p.Y281Y 0.15 TCGA-AG-3592-01 16 22155667 22155667 G A VWA3A Missense_Mutation p.A898T 0.59 tolerated(0.08) benign(0.006) TCGA-AG-3592-01 16 29907109 29907109 C T SEZ6L2 Missense_Mutation p.R195H 0.17 tolerated(0.44) benign(0.392) TCGA-AG-3592-01 16 3900884 3900884 G A CREBBP Missense_Mutation p.S71L 0.46 probably_damaging(0.986) TCGA-AG-3592-01 16 4731668 4731668 T C MGRN1 Missense_Mutation p.S417P 0.49 deleterious(0.01) possibly_damaging(0.867) TCGA-AG-3592-01 16 66600746 66600746 C G CMTM1 Missense_Mutation p.I110M 0.20 tolerated(0.09) benign(0.155) TCGA-AG-3592-01 16 706435 706435 C T WDR90 Silent p.T700T 0.30 TCGA-AG-3592-01 16 70852359 70852359 C T HYDIN Silent p.A4848A 0.22 TCGA-AG-3592-01 16 70867830 70867830 G A HYDIN Missense_Mutation p.R4547C 0.13 probably_damaging(0.942) TCGA-AG-3592-01 16 71065808 71065809 - T HYDIN Frame_Shift_Ins p.S848Ifs*6 0.21 TCGA-AG-3592-01 16 72830080 72830080 G A ZFHX3 Silent p.N2167N 0.20 TCGA-AG-3592-01 16 77369756 77369756 G A ADAMTS18 Missense_Mutation p.R586W 0.12 deleterious(0) possibly_damaging(0.881) TCGA-AG-3592-01 16 88497741 88497741 C T ZNF469 Missense_Mutation p.A1260V 0.15 benign(0.001) TCGA-AG-3592-01 17 10441041 10441041 C T MYH2 Missense_Mutation p.E510K 0.24 deleterious(0.01) benign(0.033) TCGA-AG-3592-01 17 21319344 21319344 G A KCNJ12 Silent p.A230A 0.12 TCGA-AG-3592-01 17 34641513 34641513 C T CCL4L2 Silent p.Y85Y 0.25 TCGA-AG-3592-01 17 38953394 38953394 G A KRT28 Missense_Mutation p.A277V 0.23 tolerated(0.07) benign(0.176) TCGA-AG-3592-01 17 42390005 42390005 G A RUNDC3A Silent p.S55S 0.20 TCGA-AG-3592-01 17 46110648 46110648 C T COPZ2 Missense_Mutation p.G95S 0.17 tolerated(0.06) benign(0.235) TCGA-AG-3592-01 17 46607052 46607052 G A HOXB1 Nonsense_Mutation p.R255* 0.19 TCGA-AG-3592-01 17 46804402 46804402 G A HOXB13 Missense_Mutation p.S202F 0.56 deleterious(0.05) benign(0.033) TCGA-AG-3592-01 17 4805881 4805881 A - C17orf107 3'UTR 0.32 TCGA-AG-3592-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.76 tolerated(0.11) benign(0.308) TCGA-AG-3592-01 17 78316983 78316983 A G RNF213 Missense_Mutation p.N2014S 0.21 benign(0.003) TCGA-AG-3592-01 17 79102291 79102291 G A AATK Silent p.I131I 0.31 TCGA-AG-3592-01 17 80044931 80044931 C A FASN Missense_Mutation p.C1141F 0.15 tolerated(0.07) probably_damaging(0.949) TCGA-AG-3592-01 18 63477170 63477170 C T CDH7 Silent p.N147N 0.75 TCGA-AG-3592-01 18 72343479 72343479 C T ZNF407 Silent p.F168F 0.22 TCGA-AG-3592-01 18 77475336 77475336 G A CTDP1 Missense_Mutation p.V626M 0.73 deleterious(0) probably_damaging(0.996) TCGA-AG-3592-01 18 8394504 8394504 C T PTPRM Silent p.C1413C 0.32 TCGA-AG-3592-01 19 10472190 10472190 C G TYK2 Missense_Mutation p.E682Q 0.26 tolerated(0.06) benign(0.159) TCGA-AG-3592-01 19 12462088 12462088 C A ZNF442 Missense_Mutation p.S104I 0.21 tolerated(0.24) possibly_damaging(0.629) TCGA-AG-3592-01 19 14034266 14034266 G A CC2D1A Missense_Mutation p.E588K 0.08 deleterious(0.04) possibly_damaging(0.764) TCGA-AG-3592-01 19 14046559 14046559 T G PODNL1 Missense_Mutation p.T164P 0.08 deleterious(0) probably_damaging(0.999) TCGA-AG-3592-01 19 14748991 14748991 G A EMR3 Silent p.V470V 0.17 TCGA-AG-3592-01 19 15733127 15733127 C T CYP4F8 Intron 0.04 TCGA-AG-3592-01 19 18092923 18092923 C T KCNN1 Missense_Mutation p.R302C 0.17 deleterious(0) probably_damaging(0.977) TCGA-AG-3592-01 19 22156789 22156789 G A ZNF208 Silent p.A349A 0.21 TCGA-AG-3592-01 19 2278998 2278998 C T C19orf35 Missense_Mutation p.R66Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-AG-3592-01 19 35828860 35828860 C A CD22 Nonsense_Mutation p.Y307* 0.16 TCGA-AG-3592-01 19 39101717 39101717 G A MAP4K1 Nonsense_Mutation p.R262* 0.37 TCGA-AG-3592-01 19 39805276 39805276 G A LRFN1 Missense_Mutation p.S234L 0.47 deleterious(0.03) benign(0.002) TCGA-AG-3592-01 19 39915404 39915404 G T PLEKHG2 Missense_Mutation p.A1211S 0.21 deleterious_low_confidence(0.04) benign(0.26) TCGA-AG-3592-01 19 41281554 41281554 G A MIA Missense_Mutation p.C36Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-AG-3592-01 19 42509950 42509950 G A GRIK5 Missense_Mutation p.R730W 0.36 deleterious(0.01) probably_damaging(1) TCGA-AG-3592-01 19 42860499 42860499 C T MEGF8 Missense_Mutation p.R1439C 0.25 deleterious(0) probably_damaging(0.975) TCGA-AG-3592-01 19 46095466 46095466 T A GPR4 5'UTR 0.23 TCGA-AG-3592-01 19 48342973 48342973 G A CRX Missense_Mutation p.G217S 0.24 deleterious(0.02) probably_damaging(0.954) TCGA-AG-3592-01 19 49644753 49644753 C T PPFIA3 Silent p.D815D 0.39 TCGA-AG-3592-01 19 51297216 51297216 A G ACPT Missense_Mutation p.M284V 0.40 tolerated(0.3) benign(0.301) TCGA-AG-3592-01 19 52003193 52003193 C T SIGLEC12 Silent p.K263K 0.17 TCGA-AG-3592-01 19 54721303 54721303 G T LILRB3 Missense_Mutation p.P546Q 0.10 tolerated(1) benign(0.149) TCGA-AG-3592-01 19 54721304 54721304 G C LILRB3 Missense_Mutation p.P546A 0.10 deleterious(0.03) benign(0.08) TCGA-AG-3592-01 19 54760417 54760417 C T LILRB5 Missense_Mutation p.R97H 0.42 tolerated(0.43) benign(0.103) TCGA-AG-3592-01 19 55501944 55501944 C G NLRP2 Missense_Mutation p.T871R 0.21 deleterious(0) probably_damaging(0.993) TCGA-AG-3592-01 19 55665462 55665462 C T TNNI3 Missense_Mutation p.R162Q 0.34 tolerated(0.06) benign(0.095) TCGA-AG-3592-01 19 56369245 56369245 G A NLRP4 Silent p.T162T 0.22 TCGA-AG-3592-01 19 56539531 56539531 C T NLRP5 Silent p.D644D 0.46 TCGA-AG-3592-01 19 57743526 57743526 C T AURKC Missense_Mutation p.S77L 0.45 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 19 57863040 57863040 C T ZNF304 Missense_Mutation p.A3V 0.34 tolerated(0.06) benign(0.006) TCGA-AG-3592-01 19 57931218 57931218 C G AC003002.6 Missense_Mutation p.H132D 0.12 tolerated(0.12) benign(0.089) TCGA-AG-3592-01 19 58619151 58619151 T C ZSCAN18 Intron 0.36 TCGA-AG-3592-01 19 629604 629604 C T POLRMT Missense_Mutation p.R253Q 0.19 tolerated(0.65) benign(0.002) TCGA-AG-3592-01 19 9087510 9087510 A C MUC16 Silent p.T1435T 0.23 TCGA-AG-3592-01 1 10713923 10713923 G T CASZ1 Missense_Mutation p.L731M 0.23 tolerated(0.43) benign(0.126) TCGA-AG-3592-01 1 109813864 109813864 C T CELSR2 Missense_Mutation p.A2541V 0.22 tolerated(0.45) benign(0.066) TCGA-AG-3592-01 1 112997164 112997164 A T CTTNBP2NL Missense_Mutation p.R142W 0.28 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 1 1247137 1247137 T G CPSF3L 3'UTR 0.22 TCGA-AG-3592-01 1 13942546 13942546 C T PDPN 3'UTR 0.10 TCGA-AG-3592-01 1 152188527 152188527 G A HRNR Nonsense_Mutation p.R1860* 0.07 TCGA-AG-3592-01 1 152277448 152277448 C T FLG Missense_Mutation p.R3305H 0.50 unknown(0) TCGA-AG-3592-01 1 152281651 152281651 T C FLG Missense_Mutation p.Q1904R 0.23 benign(0.227) TCGA-AG-3592-01 1 152282080 152282080 C T FLG Missense_Mutation p.R1761H 0.24 possibly_damaging(0.522) TCGA-AG-3592-01 1 152284133 152284133 G A FLG Missense_Mutation p.H1077Y 0.26 benign(0.444) TCGA-AG-3592-01 1 152648483 152648483 C G LCE2C 5'UTR 0.24 TCGA-AG-3592-01 1 154936208 154936208 A C SHC1 3'UTR 0.31 TCGA-AG-3592-01 1 158059270 158059270 C T KIRREL Intron 0.47 TCGA-AG-3592-01 1 158325847 158325847 C T CD1E Missense_Mutation p.R286W 0.20 deleterious(0.02) probably_damaging(1) TCGA-AG-3592-01 1 159802795 159802795 G A SLAMF8 Missense_Mutation p.R166Q 0.24 tolerated(0.21) benign(0.053) TCGA-AG-3592-01 1 160259721 160259721 G A COPA 3'UTR 0.50 TCGA-AG-3592-01 1 161954710 161954710 C T OLFML2B Missense_Mutation p.R512Q 0.50 deleterious(0.01) benign(0.168) TCGA-AG-3592-01 1 171553638 171553638 T C PRRC2C Silent p.T2572T 0.45 TCGA-AG-3592-01 1 172628541 172628541 C T FASLG Missense_Mutation p.P67L 0.23 tolerated(0.35) benign(0.011) TCGA-AG-3592-01 1 173470016 173470016 C A SLC9C2 3'UTR 0.29 TCGA-AG-3592-01 1 17413096 17413096 C T PADI2 Missense_Mutation p.V252M 0.16 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 1 179311256 179311256 T G SOAT1 Missense_Mutation p.F263C 0.06 deleterious(0) possibly_damaging(0.755) TCGA-AG-3592-01 1 18809600 18809600 C T KLHDC7A Missense_Mutation p.R709W 0.35 deleterious(0) probably_damaging(0.963) TCGA-AG-3592-01 1 200613462 200613462 G C DDX59 Missense_Mutation p.Q594E 0.23 tolerated(0.06) benign(0.009) TCGA-AG-3592-01 1 205884493 205884493 C T SLC26A9 Missense_Mutation p.A790T 0.26 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-AG-3592-01 1 21048381 21048381 G A SH2D5 Silent p.Y392Y 0.47 TCGA-AG-3592-01 1 214564360 214564360 G A PTPN14 Missense_Mutation p.R320C 0.19 deleterious(0) probably_damaging(0.939) TCGA-AG-3592-01 1 21930316 21930316 G A RAP1GAP Intron 0.18 TCGA-AG-3592-01 1 228524749 228524749 G A OBSCN Missense_Mutation p.A6485T 0.43 benign(0.06) TCGA-AG-3592-01 1 237205848 237205848 C T RYR2 Silent p.D9D 0.27 TCGA-AG-3592-01 1 237947223 237947223 G A RYR2 Missense_Mutation p.E4071K 0.16 possibly_damaging(0.463) TCGA-AG-3592-01 1 240497222 240497222 G A FMN2 Silent p.S1540S 0.10 TCGA-AG-3592-01 1 24669214 24669214 C T GRHL3 Missense_Mutation p.R413W 0.34 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 1 35579239 35579239 G A ZMYM1 Missense_Mutation p.R603Q 0.08 tolerated(0.45) benign(0.042) TCGA-AG-3592-01 1 38227505 38227505 C T EPHA10 Missense_Mutation p.R141H 0.35 tolerated(0.59) benign(0.006) TCGA-AG-3592-01 1 40705062 40705062 A G RLF Missense_Mutation p.E1563G 0.08 deleterious(0.03) probably_damaging(0.975) TCGA-AG-3592-01 1 43220642 43220642 C T LEPRE1 Missense_Mutation p.V415I 0.35 tolerated(0.24) benign(0.013) TCGA-AG-3592-01 1 48865032 48865032 C A SPATA6 Silent p.V257V 0.20 TCGA-AG-3592-01 1 53535604 53535604 G C PODN Missense_Mutation p.R74T 0.31 deleterious_low_confidence(0.05) benign(0.234) TCGA-AG-3592-01 1 57216795 57216795 G T C1orf168 Missense_Mutation p.Q437K 0.11 tolerated(0.09) benign(0.377) TCGA-AG-3592-01 1 67208937 67208937 T C SGIP1 3'UTR 0.42 TCGA-AG-3592-01 1 71542548 71542548 C G ZRANB2 Silent p.V77V 0.23 TCGA-AG-3592-01 1 91405964 91405964 T C ZNF644 Missense_Mutation p.N316S 0.25 tolerated(0.76) benign(0.001) TCGA-AG-3592-01 1 915827 915827 G A C1orf170 Missense_Mutation p.H101Y 0.17 tolerated(1) benign(0.031) TCGA-AG-3592-01 1 980638 980638 G A AGRN Silent p.V784V 0.25 TCGA-AG-3592-01 20 25485532 25485532 C T NINL Missense_Mutation p.E234K 0.42 tolerated(0.41) benign(0.005) TCGA-AG-3592-01 20 279760 279760 G A ZCCHC3 3'UTR 0.11 TCGA-AG-3592-01 20 31372666 31372666 G C DNMT3B Splice_Site p.X102_splice 0.10 TCGA-AG-3592-01 20 32438764 32438764 C A CHMP4B Silent p.I125I 0.12 TCGA-AG-3592-01 20 44815505 44815505 G A CDH22 Missense_Mutation p.P502L 0.09 tolerated(0.64) benign(0.023) TCGA-AG-3592-01 20 45354332 45354332 G T SLC2A10 Silent p.L219L 0.16 TCGA-AG-3592-01 20 48744617 48744617 G T TMEM189-UBE2V1 Missense_Mutation p.P196T 0.32 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-AG-3592-01 20 51871047 51871047 C A TSHZ2 Silent p.A350A 0.20 TCGA-AG-3592-01 20 56190074 56190074 C A ZBP1 Missense_Mutation p.R124M 0.10 deleterious(0) probably_damaging(0.99) TCGA-AG-3592-01 20 62598733 62598733 C G ZNF512B Splice_Site p.X88_splice 0.09 TCGA-AG-3592-01 21 22881268 22881268 T G NCAM2 Missense_Mutation p.F725C 0.29 deleterious(0) probably_damaging(0.94) TCGA-AG-3592-01 21 28338440 28338440 C T ADAMTS5 Missense_Mutation p.V91I 0.46 tolerated(0.34) benign(0.013) TCGA-AG-3592-01 21 31874235 31874235 G A KRTAP19-5 Silent p.C58C 0.07 TCGA-AG-3592-01 21 32492977 32492977 C A TIAM1 Missense_Mutation p.E1495D 0.12 tolerated(0.8) benign(0.002) TCGA-AG-3592-01 21 39672377 39672377 A G KCNJ15 3'UTR 0.21 TCGA-AG-3592-01 21 46689764 46689764 G A POFUT2 Silent p.A334A 0.23 TCGA-AG-3592-01 22 18769260 18769260 C G GGT3P Splice_Site 0.12 TCGA-AG-3592-01 22 19208987 19208987 G A CLTCL1 Silent p.S903S 0.23 TCGA-AG-3592-01 22 40658171 40658171 G A TNRC6B Missense_Mutation p.A151T 0.30 tolerated(0.43) benign(0.015) TCGA-AG-3592-01 2 11774414 11774414 G A GREB1 Missense_Mutation p.V1717M 0.18 deleterious(0) possibly_damaging(0.579) TCGA-AG-3592-01 2 140990813 140990813 T C LRP1B Missense_Mutation p.E4581G 0.10 benign(0.403) TCGA-AG-3592-01 2 166758343 166758343 T A TTC21B Missense_Mutation p.L882F 0.20 tolerated(0.09) benign(0.03) TCGA-AG-3592-01 2 170487457 170487457 C A PPIG Missense_Mutation p.H241N 0.24 tolerated_low_confidence(0.43) unknown(0) TCGA-AG-3592-01 2 179474489 179474489 G A TTN Missense_Mutation p.R17221C 0.21 TCGA-AG-3592-01 2 179478944 179478944 C G TTN Missense_Mutation p.D16394H 0.25 TCGA-AG-3592-01 2 179500870 179500870 C T TTN Missense_Mutation p.V13810M 0.21 TCGA-AG-3592-01 2 179584175 179584175 C T TTN Missense_Mutation p.R7981Q 0.51 TCGA-AG-3592-01 2 20173451 20173451 G C WDR35 Missense_Mutation p.T252S 0.19 tolerated(0.1) benign(0.001) TCGA-AG-3592-01 2 201746154 201746154 T A PPIL3 Missense_Mutation p.E81V 0.23 deleterious(0.03) benign(0.067) TCGA-AG-3592-01 2 201746155 201746155 C T PPIL3 Missense_Mutation p.E81K 0.23 deleterious(0.04) benign(0.1) TCGA-AG-3592-01 2 27163001 27163001 C T DPYSL5 Silent p.G350G 0.31 TCGA-AG-3592-01 2 27500634 27500634 G A DNAJC5G Silent p.L42L 0.21 TCGA-AG-3592-01 2 33749548 33749548 G A RASGRP3 Missense_Mutation p.G247D 0.53 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 2 44001259 44001259 G A DYNC2LI1 5'UTR 0.60 TCGA-AG-3592-01 2 63349047 63349047 C G WDPCP 3'UTR 0.17 TCGA-AG-3592-01 2 96861160 96861160 G A STARD7 Missense_Mutation p.R140C 0.29 deleterious(0.04) benign(0.071) TCGA-AG-3592-01 2 99012462 99012462 C T CNGA3 Missense_Mutation p.R277C 0.29 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 2 99778570 99778570 G A LIPT1 Nonsense_Mutation p.W50* 0.24 TCGA-AG-3592-01 3 100432698 100432698 A C TFG Missense_Mutation p.K57Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-AG-3592-01 3 109049430 109049430 G A DPPA4 Missense_Mutation p.A207V 0.19 tolerated(0.06) benign(0.098) TCGA-AG-3592-01 3 112718301 112718301 A C GTPBP8 Missense_Mutation p.L225F 0.24 deleterious(0) possibly_damaging(0.817) TCGA-AG-3592-01 3 126222847 126222847 T A UROC1 Missense_Mutation p.Q298L 0.11 tolerated(0.27) benign(0.004) TCGA-AG-3592-01 3 128200709 128200709 C T GATA2 Missense_Mutation p.G366R 0.42 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 3 130188152 130188152 G T COL6A5 Missense_Mutation p.C2435F 0.08 deleterious(0) probably_damaging(0.986) TCGA-AG-3592-01 3 142775293 142775293 C T U2SURP 3'UTR 0.21 TCGA-AG-3592-01 3 152554368 152554368 T C P2RY1 Missense_Mutation p.L266P 0.17 deleterious(0) probably_damaging(0.999) TCGA-AG-3592-01 3 155655429 155655429 G A GMPS Missense_Mutation p.R677Q 0.43 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 3 169501308 169501308 T G MYNN Missense_Mutation p.I481M 0.21 deleterious(0.04) probably_damaging(0.972) TCGA-AG-3592-01 3 183756193 183756193 G T HTR3D Missense_Mutation p.A306S 0.24 tolerated(0.06) benign(0.003) TCGA-AG-3592-01 3 185766582 185766582 G A ETV5 Missense_Mutation p.P460L 0.20 deleterious(0.02) probably_damaging(0.998) TCGA-AG-3592-01 3 39230100 39230100 G A XIRP1 Silent p.D279D 0.18 TCGA-AG-3592-01 3 40211455 40211455 G C MYRIP Missense_Mutation p.Q248H 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-AG-3592-01 3 42305024 42305024 C T CCK Silent p.L33L 0.22 TCGA-AG-3592-01 3 46062906 46062906 G A XCR1 Silent p.S178S 0.21 TCGA-AG-3592-01 3 62518689 62518689 G A CADPS Silent p.C716C 0.16 TCGA-AG-3592-01 3 6903310 6903310 C G GRM7 Missense_Mutation p.L79V 0.28 deleterious(0.05) benign(0.167) TCGA-AG-3592-01 3 74384058 74384058 G A CNTN3 Missense_Mutation p.P499L 0.27 deleterious(0) possibly_damaging(0.703) TCGA-AG-3592-01 3 77623683 77623683 C A ROBO2 Silent p.R685R 0.37 TCGA-AG-3592-01 3 8665328 8665328 C G SSUH2 Silent p.V296V 0.24 TCGA-AG-3592-01 4 100237428 100237428 C A ADH1B Missense_Mutation p.Q97H 0.30 deleterious(0.01) benign(0.282) TCGA-AG-3592-01 4 100530033 100530033 C T MTTP Silent p.D556D 0.41 TCGA-AG-3592-01 4 104640395 104640395 C T TACR3 Silent p.A146A 0.44 TCGA-AG-3592-01 4 108953510 108953510 C T HADH Missense_Mutation p.S246L 0.29 tolerated_low_confidence(1) benign(0) TCGA-AG-3592-01 4 126371794 126371794 C A FAT4 Missense_Mutation p.P3208Q 0.29 probably_damaging(1) TCGA-AG-3592-01 4 15516493 15516493 G A CC2D2A Splice_Site p.X294_splice 0.32 TCGA-AG-3592-01 4 155507410 155507410 C T FGA Missense_Mutation p.G391R 0.29 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-AG-3592-01 4 183717885 183717885 G A TENM3 Missense_Mutation p.E2437K 0.13 tolerated(0.05) possibly_damaging(0.651) TCGA-AG-3592-01 4 25677985 25677985 G A SLC34A2 Missense_Mutation p.V563I 0.44 tolerated(0.76) benign(0.002) TCGA-AG-3592-01 4 39217508 39217508 T C WDR19 Missense_Mutation p.S337P 0.10 deleterious(0.03) possibly_damaging(0.851) TCGA-AG-3592-01 4 48517073 48517073 C G FRYL Missense_Mutation p.E2637Q 0.10 tolerated_low_confidence(0.28) possibly_damaging(0.482) TCGA-AG-3592-01 4 71509280 71509281 - A ENAM Frame_Shift_Ins p.D713Efs*6 0.13 TCGA-AG-3592-01 4 71768229 71768229 G T MOB1B 5'UTR 0.35 TCGA-AG-3592-01 4 89345799 89345799 T G HERC6 Missense_Mutation p.F627C 0.17 deleterious(0.05) probably_damaging(0.959) TCGA-AG-3592-01 4 90816211 90816211 C T MMRN1 Missense_Mutation p.P30L 0.32 deleterious_low_confidence(0.02) benign(0.013) TCGA-AG-3592-01 5 109159525 109159525 A G MAN2A1 Silent p.L851L 0.25 TCGA-AG-3592-01 5 112162833 112162834 - C APC Frame_Shift_Ins p.Q480Pfs*5 0.19 TCGA-AG-3592-01 5 112175277 112175278 - C APC Frame_Shift_Ins p.R1331* 0.36 TCGA-AG-3592-01 5 118580212 118580212 G A DMXL1 Missense_Mutation p.V2934I 0.14 tolerated(0.67) benign(0.004) TCGA-AG-3592-01 5 127873078 127873078 G A FBN2 Silent p.R73R 0.12 TCGA-AG-3592-01 5 140203287 140203287 C T PCDHA5 Missense_Mutation p.R643C 0.22 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-AG-3592-01 5 140203515 140203515 G A PCDHA5 Missense_Mutation p.A719T 0.10 deleterious_low_confidence(0) benign(0.364) TCGA-AG-3592-01 5 140229613 140229613 C T PCDHA9 Silent p.H511H 0.25 TCGA-AG-3592-01 5 140517676 140517676 C A PCDHB5 3'UTR 0.23 TCGA-AG-3592-01 5 140736880 140736880 C T PCDHGA4 Silent p.L705L 0.28 TCGA-AG-3592-01 5 140812552 140812552 C T PCDHGA12 Silent p.G742G 0.18 TCGA-AG-3592-01 5 151235933 151235933 G A GLRA1 Missense_Mutation p.T163I 0.08 tolerated(0.37) benign(0.279) TCGA-AG-3592-01 5 159821685 159821685 A G C5orf54 Silent p.C271C 0.25 TCGA-AG-3592-01 5 169474534 169474534 T C DOCK2 Silent p.Y1329Y 0.16 TCGA-AG-3592-01 5 180046304 180046304 C T FLT4 Missense_Mutation p.G904S 0.26 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 5 40834599 40834599 C T RPL37 Missense_Mutation p.G38D 0.58 deleterious(0.01) probably_damaging(0.994) TCGA-AG-3592-01 5 42718736 42718736 A G GHR Missense_Mutation p.N376S 0.57 tolerated(0.37) benign(0.334) TCGA-AG-3592-01 6 112528284 112528284 A G LAMA4 Silent p.D120D 0.14 TCGA-AG-3592-01 6 125402626 125402626 G C RNF217 Missense_Mutation p.A218P 0.12 deleterious(0.03) possibly_damaging(0.77) TCGA-AG-3592-01 6 129802495 129802495 T A LAMA2 Missense_Mutation p.F2554I 0.23 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 6 132022439 132022439 C T OR2A4 Missense_Mutation p.V35I 0.37 tolerated(1) benign(0.001) TCGA-AG-3592-01 6 133065317 133065317 A G VNN2 3'UTR 0.29 TCGA-AG-3592-01 6 135513506 135513506 G A MYB Missense_Mutation p.R191Q 0.53 deleterious(0) possibly_damaging(0.862) TCGA-AG-3592-01 6 136682251 136682251 C T MAP7 Silent p.S553S 0.56 TCGA-AG-3592-01 6 138745865 138745865 C T NHSL1 Missense_Mutation p.A1396T 0.22 tolerated(0.21) benign(0.005) TCGA-AG-3592-01 6 143749541 143749541 C T ADAT2 3'UTR 0.17 TCGA-AG-3592-01 6 148840977 148840977 G A SASH1 Missense_Mutation p.R386H 0.23 tolerated_low_confidence(0.08) benign(0.391) TCGA-AG-3592-01 6 152647197 152647197 C A SYNE1 Nonsense_Mutation p.E5112* 0.25 TCGA-AG-3592-01 6 155578947 155578947 G A TFB1M 3'UTR 0.17 TCGA-AG-3592-01 6 169625415 169625415 G A THBS2 Silent p.D866D 0.39 TCGA-AG-3592-01 6 28056699 28056699 G T ZNF165 Missense_Mutation p.W303C 0.35 tolerated(0.09) probably_damaging(0.98) TCGA-AG-3592-01 6 31847887 31847887 C T EHMT2 Missense_Mutation p.G1203S 0.35 tolerated_low_confidence(1) unknown(0) TCGA-AG-3592-01 6 33694598 33694598 C T IP6K3 Missense_Mutation p.E167K 0.15 deleterious(0.04) possibly_damaging(0.735) TCGA-AG-3592-01 6 43098376 43098376 G C PTK7 Missense_Mutation p.E271D 0.12 tolerated(0.35) benign(0.008) TCGA-AG-3592-01 6 46826521 46826521 G A GPR116 Missense_Mutation p.S1040L 0.44 deleterious(0.04) probably_damaging(0.984) TCGA-AG-3592-01 6 50791223 50791223 C T TFAP2B Missense_Mutation p.S62L 0.16 tolerated(0.06) benign(0.127) TCGA-AG-3592-01 6 62688109 62688111 TTC - KHDRBS2 In_Frame_Del p.E115del 0.20 TCGA-AG-3592-01 6 71009873 71009873 C A COL9A1 Missense_Mutation p.D58Y 0.45 unknown(0) TCGA-AG-3592-01 6 90346807 90346807 A G LYRM2 3'UTR 0.22 TCGA-AG-3592-01 7 100466296 100466296 C T TRIP6 Silent p.C181C 0.11 TCGA-AG-3592-01 7 11030370 11030370 A C PHF14 Missense_Mutation p.Q314P 0.12 deleterious(0.04) possibly_damaging(0.755) TCGA-AG-3592-01 7 12409696 12409696 G A VWDE Nonsense_Mutation p.R746* 0.05 TCGA-AG-3592-01 7 139059215 139059215 G A C7orf55-LUC7L2 Intron 0.37 TCGA-AG-3592-01 7 150656789 150656789 C T KCNH2 Missense_Mutation p.V115M 0.11 deleterious(0) benign(0.247) TCGA-AG-3592-01 7 1787101 1787101 T A ELFN1 3'UTR 0.06 TCGA-AG-3592-01 7 38725623 38725623 G A FAM183B 5'UTR 0.10 TCGA-AG-3592-01 7 42088269 42088269 G A GLI3 Missense_Mutation p.T167M 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-AG-3592-01 7 44737089 44737089 C T OGDH Silent p.G724G 0.41 TCGA-AG-3592-01 7 48335346 48335346 T A ABCA13 Missense_Mutation p.L3002H 0.14 benign(0.315) TCGA-AG-3592-01 7 55912214 55912215 - CCTGGCTT SEPT14 Splice_Site p.X122_splice 0.10 TCGA-AG-3592-01 7 65551734 65551734 C T ASL Silent p.H176H 0.39 TCGA-AG-3592-01 7 72727297 72727297 G A TRIM50 Missense_Mutation p.R362C 0.41 tolerated(0.07) probably_damaging(1) TCGA-AG-3592-01 7 73118714 73118714 C T STX1A Missense_Mutation p.R108H 0.15 deleterious(0.02) possibly_damaging(0.638) TCGA-AG-3592-01 7 87145878 87145878 T C ABCB1 Missense_Mutation p.I1011V 0.14 deleterious(0.02) benign(0.003) TCGA-AG-3592-01 7 87912375 87912375 T C STEAP4 Missense_Mutation p.I189V 0.54 tolerated(0.45) benign(0.008) TCGA-AG-3592-01 7 92982952 92982952 G T CCDC132 Nonsense_Mutation p.E822* 0.13 TCGA-AG-3592-01 7 94297440 94297440 C T PEG10 3'UTR 0.16 TCGA-AG-3592-01 7 99015193 99015193 G A BUD31 Missense_Mutation p.R120H 0.49 deleterious(0) probably_damaging(0.992) TCGA-AG-3592-01 8 106813935 106813935 C A ZFPM2 Missense_Mutation p.P542H 0.14 deleterious(0) probably_damaging(0.987) TCGA-AG-3592-01 8 110431420 110431420 T G PKHD1L1 Missense_Mutation p.S819A 0.26 tolerated(0.2) benign(0.008) TCGA-AG-3592-01 8 24771360 24771360 C T NEFM Silent p.T18T 0.67 TCGA-AG-3592-01 8 25745461 25745461 G A EBF2 Missense_Mutation p.P260L 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-AG-3592-01 8 59060801 59060801 G A FAM110B 3'UTR 0.19 TCGA-AG-3592-01 8 94935083 94935083 C T PDP1 Nonsense_Mutation p.R291* 0.38 TCGA-AG-3592-01 9 107266601 107266601 T A OR13F1 Missense_Mutation p.Y20N 0.06 deleterious(0) probably_damaging(0.998) TCGA-AG-3592-01 9 111903755 111903755 C A FRRS1L Nonsense_Mutation p.E244* 0.44 TCGA-AG-3592-01 9 113276273 113276273 A C SVEP1 Missense_Mutation p.C360G 0.19 probably_damaging(1) TCGA-AG-3592-01 9 119976961 119976961 G A ASTN2 Nonsense_Mutation p.R231* 0.28 TCGA-AG-3592-01 9 121976370 121976370 A G BRINP1 Missense_Mutation p.I250T 0.21 deleterious(0) benign(0.027) TCGA-AG-3592-01 9 124967038 124967038 G A LHX6 3'UTR 0.51 TCGA-AG-3592-01 9 127262507 127262507 G T NR5A1 Silent p.I244I 0.43 TCGA-AG-3592-01 9 131345016 131345016 G A SPTAN1 Missense_Mutation p.R565H 0.12 deleterious(0) probably_damaging(0.999) TCGA-AG-3592-01 9 135203841 135203851 CTGCTCTGGAT - SETX Frame_Shift_Del p.H1045Pfs*6 0.07 TCGA-AG-3592-01 9 139407978 139407978 T A NOTCH1 Missense_Mutation p.D740V 0.12 tolerated(0.68) benign(0.014) TCGA-AG-3592-01 9 139937573 139937573 C T NPDC1 Intron 0.14 TCGA-AG-3592-01 9 140058050 140058050 G A GRIN1 Silent p.T812T 0.09 TCGA-AG-3592-01 9 16419282 16419282 G A BNC2 Missense_Mutation p.S1002L 0.13 tolerated(0.13) benign(0.044) TCGA-AG-3592-01 9 3829444 3829444 G A GLIS3 Missense_Mutation p.S841F 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-AG-3592-01 9 4576030 4576030 C T SLC1A1 Missense_Mutation p.P302L 0.27 deleterious(0.03) possibly_damaging(0.476) TCGA-AG-3592-01 9 93375497 93375497 G A DIRAS2 3'UTR 0.36 TCGA-AG-3592-01 9 95221916 95221916 G A ASPN Nonsense_Mutation p.Q315* 0.09 TCGA-AG-3592-01 X 107849971 107849971 G T COL4A5 Splice_Site p.X749_splice 0.12 TCGA-AG-3592-01 X 108718617 108718617 G C GUCY2F Missense_Mutation p.F183L 0.27 deleterious(0) probably_damaging(0.987) TCGA-AG-3592-01 X 114426897 114426897 G T RBMXL3 Missense_Mutation p.D965Y 0.27 tolerated_low_confidence(0.07) probably_damaging(0.92) TCGA-AG-3592-01 X 135427008 135427008 G C GPR112 Missense_Mutation p.K381N 0.22 tolerated(0.15) benign(0.014) TCGA-AG-3592-01 X 152845674 152845674 C T ATP2B3 Missense_Mutation p.T1194M 0.80 deleterious_low_confidence(0.01) possibly_damaging(0.87) TCGA-AG-3592-01 X 154159348 154159348 G T F8 Nonsense_Mutation p.S906* 0.36 TCGA-AG-3592-01 X 38260674 38260674 C T OTC Missense_Mutation p.T178M 0.87 deleterious(0) probably_damaging(1) TCGA-AG-3592-01 X 591822 591822 G A SHOX Missense_Mutation p.G64S 0.77 tolerated_low_confidence(0.17) benign(0.098) TCGA-AG-3592-01 X 72225523 72225526 TTCA AAAT PABPC1L2B 3'UTR 0.13 TCGA-AG-3592-01 X 78427569 78427569 C T GPR174 3'UTR 0.80 TCGA-AG-3725-01 10 101439612 101439612 C A ENTPD7 Silent p.G176G 0.50 TCGA-AG-3725-01 10 104176776 104176776 C T PSD Missense_Mutation p.R7H 0.27 tolerated_low_confidence(0.19) probably_damaging(0.987) TCGA-AG-3725-01 10 15689010 15689010 G A ITGA8 Missense_Mutation p.R348C 0.45 deleterious(0) probably_damaging(1) TCGA-AG-3725-01 10 30315900 30315900 C A KIAA1462 Missense_Mutation p.Q1059H 0.10 tolerated(0.28) benign(0.048) TCGA-AG-3725-01 10 52066984 52066984 C T SGMS1 Missense_Mutation p.R387Q 0.66 tolerated(0.37) benign(0.154) TCGA-AG-3725-01 10 7214527 7214527 C T SFMBT2 Missense_Mutation p.R694Q 0.64 deleterious(0.01) possibly_damaging(0.73) TCGA-AG-3725-01 10 97772362 97772362 G A CC2D2B Missense_Mutation p.R65Q 0.15 deleterious(0) probably_damaging(0.921) TCGA-AG-3725-01 11 113675443 113675443 C T USP28 Silent p.A870A 0.23 TCGA-AG-3725-01 11 118083128 118083128 G A AMICA1 Silent p.H64H 0.34 TCGA-AG-3725-01 11 30942414 30942414 T C DCDC1 Missense_Mutation p.I1068V 0.57 tolerated(0.88) benign(0.068) TCGA-AG-3725-01 11 47827823 47827823 C G NUP160 Missense_Mutation p.V830L 0.10 tolerated(0.07) benign(0.313) TCGA-AG-3725-01 11 6291476 6291476 C T CCKBR Missense_Mutation p.P188S 0.30 deleterious(0) probably_damaging(1) TCGA-AG-3725-01 12 122492877 122492877 G A BCL7A Silent p.E202E 0.37 TCGA-AG-3725-01 12 124203186 124203186 G A ATP6V0A2 Missense_Mutation p.S45N 0.22 tolerated(1) benign(0.014) TCGA-AG-3725-01 12 25672960 25672960 A T IFLTD1 Nonsense_Mutation p.L283* 0.10 TCGA-AG-3725-01 12 394602 394602 C T KDM5A 3'UTR 0.50 TCGA-AG-3725-01 12 53876846 53876846 G C MAP3K12 Missense_Mutation p.R581G 0.23 deleterious(0) probably_damaging(0.999) TCGA-AG-3725-01 12 56742353 56742353 C A STAT2 Nonsense_Mutation p.E562* 0.51 TCGA-AG-3725-01 12 80714364 80714364 C T OTOGL Missense_Mutation p.A1313V 0.14 deleterious(0) possibly_damaging(0.633) TCGA-AG-3725-01 12 80935422 80935422 C T PTPRQ Silent p.N1077N 0.26 TCGA-AG-3725-01 13 101714452 101714452 G A NALCN Silent p.S1541S 0.85 TCGA-AG-3725-01 13 102220053 102220053 A G ITGBL1 Missense_Mutation p.H107R 0.17 tolerated(0.2) benign(0.029) TCGA-AG-3725-01 13 52603193 52603193 G A UTP14C Missense_Mutation p.G85S 0.08 tolerated(0.69) benign(0.002) TCGA-AG-3725-01 13 84455012 84455012 C A SLITRK1 Missense_Mutation p.D211Y 0.10 deleterious(0) probably_damaging(0.984) TCGA-AG-3725-01 14 24838975 24838975 C T NFATC4 Missense_Mutation p.T187M 0.71 deleterious(0.01) possibly_damaging(0.869) TCGA-AG-3725-01 14 63671738 63671738 G A RHOJ Missense_Mutation p.V51M 0.26 deleterious(0) possibly_damaging(0.886) TCGA-AG-3725-01 14 75264908 75264908 G C YLPM1 Missense_Mutation p.A970P 0.31 possibly_damaging(0.578) TCGA-AG-3725-01 14 86088522 86088522 G A FLRT2 Missense_Mutation p.A222T 0.31 tolerated(0.06) benign(0.06) TCGA-AG-3725-01 15 22074606 22074606 T A POTEB Nonsense_Mutation p.R266* 0.19 TCGA-AG-3725-01 15 49935612 49935621 TTGAAGCCAT - DTWD1 Frame_Shift_Del p.E252Tfs*5 0.32 TCGA-AG-3725-01 15 75668179 75668179 G A SIN3A Nonsense_Mutation p.R1140* 0.33 TCGA-AG-3725-01 16 1268285 1268285 G A CACNA1H Missense_Mutation p.V1841M 0.70 deleterious(0) probably_damaging(0.999) TCGA-AG-3725-01 16 2645846 2645846 C T PDPK1 Missense_Mutation p.R466W 0.17 deleterious(0) probably_damaging(0.972) TCGA-AG-3725-01 16 55850875 55850875 C A CES1 Splice_Site p.X303_splice 0.17 TCGA-AG-3725-01 16 75268989 75268989 A G BCAR1 Missense_Mutation p.L649P 0.12 deleterious(0.01) probably_damaging(1) TCGA-AG-3725-01 17 10357081 10357081 G T MYH4 Missense_Mutation p.A938D 0.40 deleterious(0) possibly_damaging(0.611) TCGA-AG-3725-01 17 40557019 40557019 G A PTRF Missense_Mutation p.R287C 0.36 deleterious(0) probably_damaging(0.988) TCGA-AG-3725-01 17 40818976 40818976 A C TUBG2 3'UTR 0.40 TCGA-AG-3725-01 17 48273691 48273691 C T COL1A1 Missense_Mutation p.G314E 0.39 unknown(0) TCGA-AG-3725-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.83 tolerated(0.11) benign(0.308) TCGA-AG-3725-01 18 10485580 10485580 G A APCDD1 Missense_Mutation p.R299H 0.32 tolerated(0.17) probably_damaging(1) TCGA-AG-3725-01 18 33610984 33610984 C T RPRD1A Missense_Mutation p.D120N 0.65 tolerated(0.22) benign(0.013) TCGA-AG-3725-01 19 2991863 2991863 G A TLE6 Missense_Mutation p.G423R 0.19 deleterious(0) probably_damaging(0.999) TCGA-AG-3725-01 19 48342905 48342905 C G CRX Missense_Mutation p.T194S 0.42 tolerated(0.48) possibly_damaging(0.456) TCGA-AG-3725-01 19 51274870 51274870 C T GPR32 Missense_Mutation p.A338V 0.12 deleterious(0.03) probably_damaging(0.953) TCGA-AG-3725-01 19 51957483 51957483 G A SIGLEC8 Missense_Mutation p.S412L 0.61 tolerated(0.05) benign(0.005) TCGA-AG-3725-01 19 52954563 52954563 T C ZNF578 5'Flank 0.11 TCGA-AG-3725-01 19 55253491 55253491 A G KIR2DL3 Missense_Mutation p.I46V 0.25 tolerated(0.06) probably_damaging(0.946) TCGA-AG-3725-01 19 55652304 55652304 C T TNNT1 Missense_Mutation p.E112K 0.18 deleterious(0) probably_damaging(0.925) TCGA-AG-3725-01 19 57327267 57327267 T C PEG3 Missense_Mutation p.N848S 0.41 tolerated(0.94) benign(0.002) TCGA-AG-3725-01 19 58472863 58472863 C A C19orf18 Missense_Mutation p.R143M 0.33 deleterious(0.01) benign(0.341) TCGA-AG-3725-01 1 115258745 115258745 C G NRAS Missense_Mutation p.G13R 0.85 deleterious(0) possibly_damaging(0.534) TCGA-AG-3725-01 1 14113072 14113072 G A PRDM2 Intron 0.79 TCGA-AG-3725-01 1 147090757 147090757 A G BCL9 Missense_Mutation p.K266E 0.26 tolerated(0.4) probably_damaging(0.952) TCGA-AG-3725-01 1 204966444 204966444 G A NFASC Missense_Mutation p.V977I 0.34 tolerated(0.42) unknown(0) TCGA-AG-3725-01 1 233482322 233482322 G A MLK4 Missense_Mutation p.E314K 0.79 deleterious(0) probably_damaging(1) TCGA-AG-3725-01 1 236141290 236141290 T G NID1 Splice_Site p.X1208_splice 0.32 TCGA-AG-3725-01 1 908930 908930 G A PLEKHN1 Silent p.S448S 0.40 TCGA-AG-3725-01 20 4228900 4228900 C A ADRA1D Missense_Mutation p.W235C 0.28 deleterious(0) probably_damaging(0.999) TCGA-AG-3725-01 20 55209271 55209271 C T TFAP2C Missense_Mutation p.P290L 0.22 deleterious(0) probably_damaging(1) TCGA-AG-3725-01 21 31655277 31655277 T C KRTAP24-1 5'Flank 0.43 TCGA-AG-3725-01 21 37788700 37788700 C T CHAF1B 3'UTR 0.47 TCGA-AG-3725-01 2 111691077 111691077 C A ACOXL Missense_Mutation p.A306D 0.23 tolerated(0.63) benign(0.002) TCGA-AG-3725-01 2 137872775 137872775 G A THSD7B Silent p.T427T 0.81 TCGA-AG-3725-01 2 175436826 175436826 C T WIPF1 Missense_Mutation p.R236H 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-AG-3725-01 2 183699692 183699692 G A FRZB Missense_Mutation p.R288C 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-AG-3725-01 2 187500811 187500811 C T ITGAV Nonsense_Mutation p.Q212* 0.86 TCGA-AG-3725-01 2 219221891 219221891 C T C2orf62 Silent p.I33I 0.20 TCGA-AG-3725-01 2 219557320 219557320 A G STK36 Missense_Mutation p.S644G 0.14 tolerated(0.23) benign(0.005) TCGA-AG-3725-01 2 225750836 225750836 C T DOCK10 Missense_Mutation p.G186S 0.25 deleterious(0) probably_damaging(0.992) TCGA-AG-3725-01 2 237490163 237490163 C T ACKR3 Missense_Mutation p.T352M 0.80 tolerated(0.05) benign(0.041) TCGA-AG-3725-01 2 50699542 50699542 T A NRXN1 Missense_Mutation p.K1086N 0.10 deleterious(0) possibly_damaging(0.696) TCGA-AG-3725-01 3 126735880 126735880 C T PLXNA1 Silent p.N1092N 0.92 TCGA-AG-3725-01 3 137880805 137880805 G C DBR1 Missense_Mutation p.Q521E 0.26 tolerated(1) benign(0.039) TCGA-AG-3725-01 3 16306387 16306387 C T DPH3 5'UTR 0.10 TCGA-AG-3725-01 3 23541201 23541201 T G UBE2E2 Missense_Mutation p.F110L 0.14 deleterious(0.02) benign(0.291) TCGA-AG-3725-01 4 122749293 122749293 C A BBS7 Intron 0.41 TCGA-AG-3725-01 4 153251907 153251907 G A FBXW7 Nonsense_Mutation p.R367* 0.46 TCGA-AG-3725-01 5 112175207 112175207 G T APC Nonsense_Mutation p.E1306* 0.29 TCGA-AG-3725-01 5 112175348 112175348 G T APC Nonsense_Mutation p.E1353* 0.49 TCGA-AG-3725-01 5 140176742 140176742 G A PCDHA2 Silent p.A731A 0.65 TCGA-AG-3725-01 5 140250916 140250916 C T PCDHA11 Missense_Mutation p.A743V 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.493) TCGA-AG-3725-01 5 14749386 14749386 G A ANKH Silent p.S239S 0.23 TCGA-AG-3725-01 5 167553858 167553858 G T TENM2 Missense_Mutation p.C770F 0.43 deleterious(0) probably_damaging(0.999) TCGA-AG-3725-01 5 33951771 33951771 G A SLC45A2 Silent p.R348R 0.34 TCGA-AG-3725-01 5 76736793 76736793 C T WDR41 Missense_Mutation p.G243R 0.49 deleterious(0) probably_damaging(0.965) TCGA-AG-3725-01 5 80553662 80553662 G A CKMT2 Missense_Mutation p.R289H 0.52 deleterious(0.03) benign(0.028) TCGA-AG-3725-01 6 143090731 143090731 G A HIVEP2 Silent p.T1715T 0.42 TCGA-AG-3725-01 6 15246711 15246711 T G JARID2 5'UTR 0.17 TCGA-AG-3725-01 6 160978535 160978535 G A LPA Missense_Mutation p.P1567L 0.12 deleterious(0) probably_damaging(0.91) TCGA-AG-3725-01 6 31774589 31774589 G T LSM2 5'UTR 0.26 TCGA-AG-3725-01 6 32035490 32035490 G A TNXB Silent p.Y2164Y 0.11 TCGA-AG-3725-01 6 33219667 33219667 C T VPS52 Missense_Mutation p.G626R 0.45 deleterious(0) probably_damaging(0.924) TCGA-AG-3725-01 6 345890 345890 C T DUSP22 Silent p.H75H 0.07 TCGA-AG-3725-01 6 34952981 34952981 G A ANKS1A Missense_Mutation p.G379R 0.44 deleterious(0) possibly_damaging(0.581) TCGA-AG-3725-01 6 35838117 35838118 CT - SRPK1 Frame_Shift_Del p.P312Cfs*2 0.09 TCGA-AG-3725-01 6 38976703 38976703 A C DNAH8 Missense_Mutation p.E4226A 0.06 benign(0.145) TCGA-AG-3725-01 6 39869799 39869799 C T DAAM2 Missense_Mutation p.R1065W 0.15 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-AG-3725-01 6 76063371 76063371 C T FILIP1 Silent p.L171L 0.45 TCGA-AG-3725-01 6 99831606 99831606 G T COQ3 Silent p.I67I 0.16 TCGA-AG-3725-01 7 103322605 103322605 A G RELN Missense_Mutation p.I416T 0.19 tolerated(0.91) benign(0.001) TCGA-AG-3725-01 7 111395600 111395600 G A DOCK4 Missense_Mutation p.R1454C 0.34 deleterious(0.03) benign(0.398) TCGA-AG-3725-01 7 121717989 121717989 C T AASS Silent p.T855T 0.20 TCGA-AG-3725-01 7 138413520 138413520 G A ATP6V0A4 Missense_Mutation p.H666Y 0.17 tolerated(0.32) probably_damaging(0.919) TCGA-AG-3725-01 7 44005479 44005479 G A RP5-1165K10.2 RNA 0.09 TCGA-AG-3725-01 7 72754667 72754667 G A FKBP6 Missense_Mutation p.A206T 0.38 tolerated(0.2) benign(0.071) TCGA-AG-3725-01 7 89969780 89969780 T A GTPBP10 5'UTR 0.75 TCGA-AG-3725-01 8 131792652 131792652 T A ADCY8 Missense_Mutation p.K1247I 0.28 deleterious_low_confidence(0) benign(0) TCGA-AG-3725-01 8 6873450 6873450 T C DEFA3 3'UTR 0.31 TCGA-AG-3725-01 8 77616674 77616674 C T ZFHX4 Silent p.S117S 0.81 TCGA-AG-3725-01 8 86569766 86569766 T A REXO1L1P 3'UTR 0.22 TCGA-AG-3725-01 9 107361590 107361590 A G OR13C5 Silent p.Y35Y 0.29 TCGA-AG-3725-01 9 111617473 111617473 G A ACTL7B Silent p.D246D 0.27 TCGA-AG-3725-01 9 125486749 125486749 G A OR1L4 Missense_Mutation p.V161M 0.47 deleterious(0.02) possibly_damaging(0.532) TCGA-AG-3725-01 9 134165770 134165770 C T PPAPDC3 Missense_Mutation p.T129I 0.46 deleterious(0) possibly_damaging(0.859) TCGA-AG-3725-01 9 137804912 137804912 G A FCN1 Missense_Mutation p.R140W 0.53 deleterious(0) benign(0.15) TCGA-AG-3725-01 9 3828229 3828229 C T GLIS3 3'UTR 0.17 TCGA-AG-3725-01 9 75540485 75540485 G T ALDH1A1 Missense_Mutation p.A183E 0.37 deleterious(0) probably_damaging(0.992) TCGA-AG-3725-01 X 106097501 106097501 T C TBC1D8B Missense_Mutation p.L776P 0.25 deleterious(0.01) benign(0.175) TCGA-AG-3725-01 X 133627616 133627616 G T HPRT1 Missense_Mutation p.A161S 0.09 deleterious(0.01) possibly_damaging(0.784) TCGA-AG-3725-01 X 136649636 136649636 C T ZIC3 Silent p.S262S 0.11 TCGA-AG-3725-01 X 151302947 151302947 T C MAGEA10 3'UTR 0.08 TCGA-AG-3725-01 X 152771381 152771381 C T BGN Missense_Mutation p.R138W 0.69 deleterious(0.01) benign(0.301) TCGA-AG-3725-01 X 154159074 154159074 A G F8 Silent p.A997A 0.27 TCGA-AG-3725-01 X 44108086 44108086 T A EFHC2 Missense_Mutation p.K312M 0.15 tolerated(0.1) benign(0.098) TCGA-AG-3725-01 X 69504553 69504553 G A RAB41 3'UTR 0.23 TCGA-AG-3725-01 X 92928044 92928044 G A NAP1L3 Missense_Mutation p.A87V 0.53 tolerated(0.3) benign(0.066) TCGA-AG-3731-01 10 1042096 1042096 G A GTPBP4 Missense_Mutation p.R125H 0.16 deleterious(0) probably_damaging(0.985) TCGA-AG-3731-01 10 105063539 105063539 A C PCGF6 3'UTR 0.32 TCGA-AG-3731-01 10 13276241 13276241 G A UCMA Silent p.A6A 0.33 TCGA-AG-3731-01 10 50835688 50835688 G A CHAT Missense_Mutation p.R323H 0.20 deleterious(0.04) probably_damaging(0.976) TCGA-AG-3731-01 10 75530545 75530545 C T SEC24C Missense_Mutation p.R1045W 0.30 tolerated(0.08) benign(0.112) TCGA-AG-3731-01 11 100179135 100179135 G T CNTN5 Missense_Mutation p.V889L 0.26 deleterious(0) benign(0.338) TCGA-AG-3731-01 11 113295224 113295224 G A DRD2 Silent p.F50F 0.27 TCGA-AG-3731-01 11 121028877 121028877 G A TECTA Missense_Mutation p.V1545I 0.14 deleterious(0.01) possibly_damaging(0.734) TCGA-AG-3731-01 11 479110 479110 G A PTDSS2 Silent p.V131V 0.23 TCGA-AG-3731-01 11 55735512 55735512 G T OR10AG1 Missense_Mutation p.T143K 0.17 deleterious(0) benign(0.271) TCGA-AG-3731-01 11 63884784 63884784 G A FLRT1 Missense_Mutation p.V349M 0.27 tolerated(0.07) benign(0.025) TCGA-AG-3731-01 11 65349195 65349195 C T EHBP1L1 Missense_Mutation p.T351I 0.19 tolerated(0.1) benign(0.408) TCGA-AG-3731-01 11 93431000 93431000 G A KIAA1731 Silent p.L974L 0.26 TCGA-AG-3731-01 12 10332050 10332050 A G TMEM52B 5'UTR 0.32 TCGA-AG-3731-01 12 105151178 105151178 G A CHST11 Missense_Mutation p.R219H 0.23 deleterious(0) probably_damaging(0.99) TCGA-AG-3731-01 12 109046145 109046145 C T CORO1C Missense_Mutation p.V302I 0.25 tolerated(0.31) benign(0.147) TCGA-AG-3731-01 12 124332555 124332555 C T DNAH10 Silent p.T1836T 0.26 TCGA-AG-3731-01 12 125576061 125576061 G A AACS Missense_Mutation p.G188S 0.23 deleterious(0) probably_damaging(0.989) TCGA-AG-3731-01 12 130831057 130831057 C T PIWIL1 Silent p.H153H 0.24 TCGA-AG-3731-01 12 21349931 21349931 T G SLCO1B1 Missense_Mutation p.L260R 0.15 deleterious(0) probably_damaging(1) TCGA-AG-3731-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.11 deleterious(0) possibly_damaging(0.479) TCGA-AG-3731-01 12 2788865 2788865 G A CACNA1C Missense_Mutation p.G1831S 0.37 tolerated_low_confidence(0.7) benign(0.005) TCGA-AG-3731-01 12 5154858 5154858 C T KCNA5 Silent p.I515I 0.08 TCGA-AG-3731-01 12 54404943 54404943 C G HOXC8 Silent p.L169L 0.21 TCGA-AG-3731-01 12 56398119 56398119 G A SUOX Missense_Mutation p.V316I 0.11 tolerated(0.18) benign(0.414) TCGA-AG-3731-01 12 69753758 69753758 C G YEATS4 Missense_Mutation p.F2L 0.22 tolerated_low_confidence(0.4) benign(0.006) TCGA-AG-3731-01 12 70091550 70091550 G A BEST3 Missense_Mutation p.A10V 0.23 deleterious(0) probably_damaging(0.998) TCGA-AG-3731-01 12 7028820 7028820 G A ENO2 Missense_Mutation p.R253H 0.53 deleterious_low_confidence(0.03) benign(0.01) TCGA-AG-3731-01 12 91502182 91502182 C G LUM Missense_Mutation p.S192T 0.25 deleterious(0.04) probably_damaging(0.919) TCGA-AG-3731-01 13 111277575 111277575 C T CARKD Silent p.A112A 0.18 TCGA-AG-3731-01 13 28626756 28626756 G A FLT3 Silent p.D180D 0.09 TCGA-AG-3731-01 13 47466659 47466659 G A HTR2A Missense_Mutation p.T160M 0.21 deleterious(0) probably_damaging(1) TCGA-AG-3731-01 13 50307151 50307151 C G KPNA3 Missense_Mutation p.R49T 0.16 deleterious(0) probably_damaging(1) TCGA-AG-3731-01 13 84456236 84456236 C A SLITRK1 5'UTR 0.22 TCGA-AG-3731-01 14 104387391 104387391 A G C14orf2 5'UTR 0.40 TCGA-AG-3731-01 14 20388951 20388951 C A OR4K5 Silent p.L62L 0.21 TCGA-AG-3731-01 14 58056021 58056021 G A SLC35F4 Missense_Mutation p.T203I 0.20 deleterious(0) possibly_damaging(0.894) TCGA-AG-3731-01 14 67525469 67525470 - C GPHN Frame_Shift_Ins p.V372Gfs*44 0.13 TCGA-AG-3731-01 14 68268904 68268904 G A ZFYVE26 Missense_Mutation p.L511F 0.16 tolerated(0.11) possibly_damaging(0.656) TCGA-AG-3731-01 14 77845074 77845074 A G SAMD15 Missense_Mutation p.E438G 0.17 deleterious(0.01) possibly_damaging(0.59) TCGA-AG-3731-01 15 42644475 42644475 T C GANC 3'UTR 0.25 TCGA-AG-3731-01 15 43499591 43499591 G A EPB42 Missense_Mutation p.T405M 0.20 tolerated(0.11) benign(0.01) TCGA-AG-3731-01 15 54557568 54557568 G T UNC13C Missense_Mutation p.G1231V 0.18 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-AG-3731-01 15 72260362 72260362 A T MYO9A Missense_Mutation p.I650K 0.23 deleterious(0) probably_damaging(0.976) TCGA-AG-3731-01 15 74467645 74467645 G A ISLR Missense_Mutation p.R149H 0.23 deleterious(0) probably_damaging(0.95) TCGA-AG-3731-01 15 83346498 83346498 G A AP3B2 Missense_Mutation p.R435C 0.20 deleterious(0) probably_damaging(0.99) TCGA-AG-3731-01 15 89195465 89195465 G A ISG20 Missense_Mutation p.R118H 0.21 tolerated(0.2) benign(0.009) TCGA-AG-3731-01 16 11001528 11001528 G A CIITA Missense_Mutation p.E727K 0.14 deleterious(0) benign(0.069) TCGA-AG-3731-01 16 1487952 1487952 G A CCDC154 Nonsense_Mutation p.R395* 0.24 TCGA-AG-3731-01 16 23535718 23535718 G A EARS2 Missense_Mutation p.R516W 0.17 deleterious(0) probably_damaging(1) TCGA-AG-3731-01 16 24816116 24816116 C G TNRC6A Missense_Mutation p.Q1310E 0.29 deleterious(0.01) benign(0.344) TCGA-AG-3731-01 16 55518020 55518020 G A MMP2 Missense_Mutation p.R158Q 0.25 tolerated(0.06) benign(0.001) TCGA-AG-3731-01 16 67681232 67681234 ATG - RLTPR In_Frame_Del p.M241del 0.23 TCGA-AG-3731-01 16 830786 830786 C T MSLNL Missense_Mutation p.R72H 0.29 benign(0.047) TCGA-AG-3731-01 16 88691612 88691612 G A ZC3H18 Missense_Mutation p.R682Q 0.12 tolerated_low_confidence(0.05) unknown(0) TCGA-AG-3731-01 17 10351935 10351935 G A MYH4 Nonsense_Mutation p.Q1511* 0.34 TCGA-AG-3731-01 17 20163524 20163524 C G SPECC1 Missense_Mutation p.L953V 0.29 deleterious(0) probably_damaging(0.997) TCGA-AG-3731-01 17 42882687 42882687 G A GJC1 Missense_Mutation p.R167W 0.26 deleterious(0) benign(0.336) TCGA-AG-3731-01 17 4542791 4542791 C T ALOX15 Missense_Mutation p.E91K 0.24 tolerated(0.19) benign(0.127) TCGA-AG-3731-01 17 49048080 49048080 C T SPAG9 Missense_Mutation p.D1280N 0.16 deleterious(0) probably_damaging(0.969) TCGA-AG-3731-01 17 7346411 7346411 G A FGF11 Silent p.E208E 0.36 TCGA-AG-3731-01 17 7579591 7579591 C T TP53 Splice_Site p.X33_splice 0.38 TCGA-AG-3731-01 17 80274718 80274718 G T CD7 Missense_Mutation p.D74E 0.12 tolerated(0.11) possibly_damaging(0.613) TCGA-AG-3731-01 18 19348680 19348680 A T MIB1 Missense_Mutation p.E166D 0.19 tolerated(0.36) benign(0.202) TCGA-AG-3731-01 18 47796315 47796315 C G MBD1 Intron 0.27 TCGA-AG-3731-01 18 61089537 61089537 A G VPS4B 5'UTR 0.31 TCGA-AG-3731-01 18 65178966 65178966 T A DSEL Missense_Mutation p.K970N 0.22 deleterious(0.03) possibly_damaging(0.452) TCGA-AG-3731-01 19 12691220 12691220 G C ZNF490 3'UTR 0.18 TCGA-AG-3731-01 19 12691348 12691348 G C ZNF490 Nonsense_Mutation p.S514* 0.21 TCGA-AG-3731-01 19 18255980 18255980 C T MAST3 Missense_Mutation p.R965W 0.22 deleterious(0) probably_damaging(1) TCGA-AG-3731-01 19 1827578 1827578 G A REXO1 Nonsense_Mutation p.R404* 0.16 TCGA-AG-3731-01 19 20002521 20002521 G A ZNF253 Silent p.K155K 0.25 TCGA-AG-3731-01 19 20807776 20807776 G A ZNF626 Missense_Mutation p.H303Y 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-AG-3731-01 19 2102141 2102141 C T AP3D1 3'UTR 0.26 TCGA-AG-3731-01 19 2396635 2396635 C T TMPRSS9 Missense_Mutation p.R81C 0.24 deleterious(0.01) benign(0.046) TCGA-AG-3731-01 19 33168619 33168619 G A RGS9BP 3'UTR 0.21 TCGA-AG-3731-01 19 41884236 41884236 G C TMEM91 Missense_Mutation p.E8Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.625) TCGA-AG-3731-01 19 45262731 45262731 C A BCL3 Silent p.P408P 0.21 TCGA-AG-3731-01 19 45854914 45854914 C A ERCC2 Missense_Mutation p.R752S 0.29 deleterious(0.03) benign(0.116) TCGA-AG-3731-01 19 49340515 49340515 G A PLEKHA4 3'UTR 0.23 TCGA-AG-3731-01 19 50059932 50059932 A G NOSIP Missense_Mutation p.V200A 0.11 deleterious(0) possibly_damaging(0.869) TCGA-AG-3731-01 19 58131715 58131715 A G ZNF134 Silent p.K76K 0.16 TCGA-AG-3731-01 19 5866769 5866769 T C FUT5 Missense_Mutation p.D323G 0.18 deleterious(0.04) probably_damaging(0.967) TCGA-AG-3731-01 19 7690922 7690922 G T XAB2 Missense_Mutation p.H222Q 0.21 tolerated(0.31) benign(0.004) TCGA-AG-3731-01 1 1421550 1421550 C T ATAD3B Missense_Mutation p.R342W 0.16 deleterious(0.01) possibly_damaging(0.696) TCGA-AG-3731-01 1 147380779 147380779 C T GJA8 Missense_Mutation p.R233W 0.11 deleterious(0) possibly_damaging(0.776) TCGA-AG-3731-01 1 152659458 152659458 T C LCE2B Missense_Mutation p.C47R 0.23 tolerated_low_confidence(0.06) unknown(0) TCGA-AG-3731-01 1 153910310 153910310 C T DENND4B Silent p.P665P 0.15 TCGA-AG-3731-01 1 156106818 156106818 C T LMNA Missense_Mutation p.T496M 0.26 deleterious(0) probably_damaging(0.999) TCGA-AG-3731-01 1 158368542 158368542 C A OR10T2 Missense_Mutation p.V239F 0.10 deleterious(0) benign(0.013) TCGA-AG-3731-01 1 158609705 158609705 C T SPTA1 Silent p.Q1610Q 0.14 TCGA-AG-3731-01 1 161179010 161179010 T G NDUFS2 Missense_Mutation p.Y141D 0.08 deleterious(0) probably_damaging(1) TCGA-AG-3731-01 1 192153742 192153742 G A RGS18 3'UTR 0.11 TCGA-AG-3731-01 1 196952036 196952036 A G CFHR5 Missense_Mutation p.K27R 0.06 tolerated(0.46) benign(0.016) TCGA-AG-3731-01 1 205277835 205277838 CACG - NUAK2 Frame_Shift_Del p.V126Sfs*132 0.21 TCGA-AG-3731-01 1 205739922 205739922 C T RAB7L1 Missense_Mutation p.G147S 0.12 deleterious(0.01) benign(0.438) TCGA-AG-3731-01 1 210577849 210577849 G A HHAT Silent p.Q171Q 0.27 TCGA-AG-3731-01 1 225339751 225339751 C T DNAH14 Missense_Mutation p.A742V 0.08 deleterious(0.02) probably_damaging(0.932) TCGA-AG-3731-01 1 225533739 225533739 G A DNAH14 Missense_Mutation p.R2689H 0.08 tolerated(0.06) possibly_damaging(0.84) TCGA-AG-3731-01 1 23395124 23395124 C T KDM1A Silent p.V424V 0.11 TCGA-AG-3731-01 1 237052581 237052581 C G MTR Silent p.L984L 0.19 TCGA-AG-3731-01 1 248636948 248636948 G A OR2T3 Silent p.P99P 0.13 TCGA-AG-3731-01 1 33945203 33945203 G A ZSCAN20 Missense_Mutation p.R105K 0.19 tolerated(0.75) benign(0.038) TCGA-AG-3731-01 1 43900128 43900128 T - SZT2 Frame_Shift_Del p.E1904Rfs*85 0.15 TCGA-AG-3731-01 1 55623038 55623038 G A USP24 Silent p.T411T 0.19 TCGA-AG-3731-01 20 30729599 30729599 G A TM9SF4 Silent p.R143R 0.18 TCGA-AG-3731-01 20 31996657 31996657 C T SNTA1 Silent p.V425V 0.16 TCGA-AG-3731-01 20 3321330 3321330 G A C20orf194 Intron 0.16 TCGA-AG-3731-01 20 34136262 34136262 G A ERGIC3 Silent p.K154K 0.20 TCGA-AG-3731-01 20 50090585 50090585 C T NFATC2 Missense_Mutation p.R547Q 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-AG-3731-01 20 52645320 52645320 C T BCAS1 Missense_Mutation p.A112T 0.51 tolerated(1) benign(0) TCGA-AG-3731-01 20 56993271 56993271 C T VAPB Silent p.P21P 0.18 TCGA-AG-3731-01 20 6022178 6022178 G T LRRN4 Silent p.P571P 0.43 TCGA-AG-3731-01 21 11098733 11098733 G A BAGE2 RNA 0.31 TCGA-AG-3731-01 21 46193556 46193556 G A UBE2G2 Silent p.G97G 0.09 TCGA-AG-3731-01 22 24836656 24836656 C T ADORA2A Silent p.C146C 0.29 TCGA-AG-3731-01 22 45312408 45312408 C T PHF21B Missense_Mutation p.V106I 0.28 tolerated_low_confidence(1) benign(0.002) TCGA-AG-3731-01 22 50538027 50538027 C T MOV10L1 Silent p.C146C 0.28 TCGA-AG-3731-01 2 113180139 113180139 C T RGPD8 Missense_Mutation p.V80I 0.17 tolerated(0.2) probably_damaging(0.989) TCGA-AG-3731-01 2 141625386 141625386 G C LRP1B Nonsense_Mutation p.S1451* 0.22 TCGA-AG-3731-01 2 170026297 170026297 C T LRP2 Silent p.Q3804Q 0.29 TCGA-AG-3731-01 2 172641896 172641896 G A SLC25A12 Missense_Mutation p.A642V 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-AG-3731-01 2 179585116 179585116 G C TTN Missense_Mutation p.F7791L 0.15 TCGA-AG-3731-01 2 18112899 18112899 G A KCNS3 Silent p.S208S 0.28 TCGA-AG-3731-01 2 197298107 197298107 C T HECW2 Missense_Mutation p.R14H 0.32 deleterious_low_confidence(0.05) probably_damaging(0.996) TCGA-AG-3731-01 2 26667174 26667174 G A DRC1 Silent p.S371S 0.16 TCGA-AG-3731-01 2 79384717 79384717 C T REG3A Silent p.A147A 0.23 TCGA-AG-3731-01 3 108330154 108330154 A G DZIP3 Missense_Mutation p.D79G 0.25 deleterious_low_confidence(0.04) benign(0.235) TCGA-AG-3731-01 3 147128637 147128637 C G ZIC1 Missense_Mutation p.F246L 0.13 deleterious(0) probably_damaging(0.95) TCGA-AG-3731-01 3 186395415 186395415 C T HRG Nonsense_Mutation p.R441* 0.11 TCGA-AG-3731-01 3 25761660 25761660 C A NGLY1 Missense_Mutation p.G545V 0.24 deleterious(0) probably_damaging(0.998) TCGA-AG-3731-01 3 27233612 27233612 G C NEK10 Missense_Mutation p.L805V 0.11 tolerated(0.1) possibly_damaging(0.536) TCGA-AG-3731-01 3 36871126 36871126 T C TRANK1 Missense_Mutation p.N2869S 0.19 tolerated(0.79) benign(0.001) TCGA-AG-3731-01 3 47125770 47125770 C T SETD2 Missense_Mutation p.V1834I 0.34 tolerated(0.36) benign(0.004) TCGA-AG-3731-01 3 51746730 51746730 G A GRM2 Missense_Mutation p.R231H 0.18 tolerated(0.34) benign(0.178) TCGA-AG-3731-01 4 119631268 119631268 A C METTL14 Missense_Mutation p.R394S 0.21 tolerated(0.74) probably_damaging(0.966) TCGA-AG-3731-01 4 175158655 175158655 G A FBXO8 Nonsense_Mutation p.R290* 0.28 TCGA-AG-3731-01 4 187540871 187540871 A - FAT1 Frame_Shift_Del p.V2290Gfs*8 0.31 TCGA-AG-3731-01 4 2209942 2209942 A G POLN Silent p.N162N 0.12 TCGA-AG-3731-01 4 44685325 44685325 A G GUF1 Missense_Mutation p.E220G 0.35 tolerated(0.07) possibly_damaging(0.542) TCGA-AG-3731-01 4 57221472 57221472 C T AASDH Missense_Mutation p.V327I 0.10 tolerated(0.14) benign(0.033) TCGA-AG-3731-01 4 57265400 57265400 C T PPAT Missense_Mutation p.R394K 0.20 deleterious(0) probably_damaging(0.999) TCGA-AG-3731-01 4 90170717 90170717 T C GPRIN3 Missense_Mutation p.K182R 0.23 tolerated(0.06) benign(0.069) TCGA-AG-3731-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.25 TCGA-AG-3731-01 5 112175193 112175202 CCCTGCAAAT - APC Frame_Shift_Del p.T1301Kfs*4 0.10 TCGA-AG-3731-01 5 131042147 131042147 G A FNIP1 Missense_Mutation p.R291C 0.17 deleterious(0) probably_damaging(0.999) TCGA-AG-3731-01 5 140167966 140167966 C T PCDHA1 Silent p.N697N 0.24 TCGA-AG-3731-01 5 140182445 140182445 G A PCDHA3 Missense_Mutation p.V555M 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AG-3731-01 5 140237259 140237259 G A PCDHA10 Silent p.P542P 0.15 TCGA-AG-3731-01 5 158526614 158526614 C T EBF1 5'UTR 0.17 TCGA-AG-3731-01 5 162868928 162868928 A T CCNG1 Missense_Mutation p.Q185H 0.04 deleterious(0.04) benign(0.295) TCGA-AG-3731-01 5 42719174 42719174 C T GHR Missense_Mutation p.S522L 0.14 tolerated(0.17) benign(0.06) TCGA-AG-3731-01 5 85586701 85586701 C T NBPF22P RNA 0.24 TCGA-AG-3731-01 6 128297824 128297824 A T PTPRK Missense_Mutation p.F1322Y 0.11 deleterious(0) probably_damaging(0.961) TCGA-AG-3731-01 6 152712587 152712587 C G SYNE1 Missense_Mutation p.R2610T 0.28 benign(0.199) TCGA-AG-3731-01 6 159457675 159457675 G C TAGAP Missense_Mutation p.F460L 0.41 tolerated(1) benign(0.001) TCGA-AG-3731-01 6 159653415 159653415 C A FNDC1 Missense_Mutation p.A624E 0.09 tolerated_low_confidence(0.65) unknown(0) TCGA-AG-3731-01 6 167453513 167453513 G A FGFR1OP 3'UTR 0.32 TCGA-AG-3731-01 6 26022177 26022177 C T HIST1H4A Missense_Mutation p.L91F 0.20 deleterious(0.02) possibly_damaging(0.84) TCGA-AG-3731-01 6 29431875 29431875 C T OR2H1 3'UTR 0.17 TCGA-AG-3731-01 6 31691923 31691923 C T C6orf25 Silent p.S138S 0.18 TCGA-AG-3731-01 7 100470316 100470316 A T TRIP6 Nonsense_Mutation p.R417* 0.21 TCGA-AG-3731-01 7 107816967 107816967 A G NRCAM Missense_Mutation p.F1020S 0.19 tolerated(0.39) benign(0.155) TCGA-AG-3731-01 7 138763338 138763338 T G ZC3HAV1 Missense_Mutation p.E511D 0.22 tolerated(0.09) benign(0.007) TCGA-AG-3731-01 7 140500173 140500173 C T BRAF Silent p.S323S 0.25 TCGA-AG-3731-01 7 141464569 141464571 TCT - TAS2R3 In_Frame_Del p.F205del 0.22 TCGA-AG-3731-01 7 31378715 31378715 G A NEUROD6 Silent p.T56T 0.28 TCGA-AG-3731-01 7 38534123 38534123 C A AMPH Missense_Mutation p.M70I 0.31 deleterious(0) possibly_damaging(0.843) TCGA-AG-3731-01 7 56549965 56549965 C A RP11-760D2.1 RNA 0.31 TCGA-AG-3731-01 7 92760879 92760879 G A SAMD9L Missense_Mutation p.S1469F 0.23 deleterious(0.04) benign(0.072) TCGA-AG-3731-01 7 99355749 99355749 G A CYP3A4 3'UTR 0.14 TCGA-AG-3731-01 8 106814820 106814820 T G ZFPM2 Nonsense_Mutation p.L837* 0.07 TCGA-AG-3731-01 8 116599711 116599711 G A TRPS1 Silent p.G739G 0.21 TCGA-AG-3731-01 8 124985671 124985671 C T FER1L6 Intron 0.23 TCGA-AG-3731-01 8 145625387 145625387 G A CPSF1 Silent p.G342G 0.15 TCGA-AG-3731-01 8 26722324 26722324 G A ADRA1A Nonsense_Mutation p.R55* 0.27 TCGA-AG-3731-01 8 28186709 28186709 G A PNOC Missense_Mutation p.S12N 0.16 deleterious(0.01) unknown(0) TCGA-AG-3731-01 8 57079860 57079860 C T PLAG1 Missense_Mutation p.D149N 0.17 deleterious(0) probably_damaging(0.989) TCGA-AG-3731-01 8 59512578 59512578 A G NSMAF Missense_Mutation p.I459T 0.14 deleterious(0) possibly_damaging(0.543) TCGA-AG-3731-01 8 65291776 65291776 C T MIR124-2 RNA 0.16 TCGA-AG-3731-01 8 68111021 68111021 G C ARFGEF1 3'UTR 0.38 TCGA-AG-3731-01 8 86035726 86035726 T C LRRCC1 Missense_Mutation p.Y337H 0.17 tolerated(0.51) benign(0.009) TCGA-AG-3731-01 8 87081681 87081681 G A PSKH2 Silent p.P57P 0.11 TCGA-AG-3731-01 8 93026961 93026963 GAA - RUNX1T1 In_Frame_Del p.S119del 0.33 TCGA-AG-3731-01 9 132576475 132576475 C T TOR1A Missense_Mutation p.D259N 0.11 deleterious(0.04) possibly_damaging(0.761) TCGA-AG-3731-01 9 134098264 134098264 G A NUP214 Missense_Mutation p.G1950E 0.29 probably_damaging(0.998) TCGA-AG-3731-01 9 135277396 135277396 G A TTF1 Silent p.H271H 0.09 TCGA-AG-3731-01 9 138908272 138908272 T C NACC2 Missense_Mutation p.Q297R 0.09 deleterious(0.05) possibly_damaging(0.493) TCGA-AG-3731-01 9 4661998 4661998 A G SPATA6L Silent p.D26D 0.23 TCGA-AG-3731-01 X 123517987 123517987 G A TENM1 Missense_Mutation p.A2265V 0.42 tolerated(0.13) benign(0.163) TCGA-AG-3731-01 X 12734761 12734761 C T FRMPD4 Missense_Mutation p.A728V 0.50 deleterious_low_confidence(0.05) benign(0.043) TCGA-AG-3731-01 X 135304585 135304585 C T MAP7D3 Missense_Mutation p.D752N 0.45 deleterious(0.01) probably_damaging(0.964) TCGA-AG-3731-01 X 135430849 135430849 A G GPR112 Missense_Mutation p.T1662A 0.53 deleterious(0) benign(0.182) TCGA-AG-3731-01 X 137717737 137717737 C T FGF13 Missense_Mutation p.R171H 0.45 deleterious(0.01) benign(0.281) TCGA-AG-3731-01 X 147011728 147011728 A G FMR1 Missense_Mutation p.I199V 0.38 deleterious(0.03) benign(0.046) TCGA-AG-3731-01 X 20033383 20033383 C G MAP7D2 Missense_Mutation p.Q569H 0.48 deleterious(0.02) unknown(0) TCGA-AG-3731-01 X 37026939 37026939 G A FAM47C Silent p.P152P 0.52 TCGA-AG-3731-01 X 54334413 54334413 G A WNK3 Missense_Mutation p.S344L 0.23 deleterious(0) probably_damaging(1) TCGA-AG-3731-01 X 70148042 70148042 G A SLC7A3 Missense_Mutation p.A258V 0.46 deleterious(0) probably_damaging(0.998) TCGA-AG-3731-01 X 92966233 92966233 C T FAM133A 3'UTR 0.46 TCGA-AG-3732-01 10 116606980 116606980 A G FAM160B1 Missense_Mutation p.K567R 0.07 tolerated(0.33) benign(0.002) TCGA-AG-3732-01 10 134694373 134694373 G A TTC40 Missense_Mutation p.T1264M 0.20 deleterious(0.04) benign(0.109) TCGA-AG-3732-01 10 31812949 31812949 G A ZEB1 Missense_Mutation p.R898Q 0.38 deleterious(0.01) possibly_damaging(0.536) TCGA-AG-3732-01 10 43678937 43678937 G A CSGALNACT2 Missense_Mutation p.E526K 0.32 tolerated(0.1) probably_damaging(0.99) TCGA-AG-3732-01 10 73767675 73767675 G A CHST3 Missense_Mutation p.V296I 0.27 tolerated(0.67) benign(0.015) TCGA-AG-3732-01 10 90580212 90580217 AGGAGG - LIPM In_Frame_Del p.E410_E411del 0.33 TCGA-AG-3732-01 10 96291071 96291071 C T TBC1D12 Nonsense_Mutation p.R705* 0.32 TCGA-AG-3732-01 11 100211914 100211914 G A CNTN5 Missense_Mutation p.E1003K 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-AG-3732-01 11 57118272 57118272 G A P2RX3 Missense_Mutation p.D248N 0.25 tolerated(0.59) benign(0.386) TCGA-AG-3732-01 11 5906021 5906021 C T OR52E4 Missense_Mutation p.R167C 0.13 deleterious(0) probably_damaging(0.996) TCGA-AG-3732-01 11 67219092 67219092 C T GPR152 Silent p.S368S 0.41 TCGA-AG-3732-01 11 74424489 74424489 C T CHRDL2 Silent p.P77P 0.27 TCGA-AG-3732-01 11 77333633 77333633 C A CLNS1A Missense_Mutation p.E186D 0.20 tolerated(0.16) possibly_damaging(0.735) TCGA-AG-3732-01 12 120759996 120760022 TCAACTCTGACAATACTTCTTGGTGTC - PLA2G1B Nonstop_Mutation p.DTKKYCQS*141delext*11 0.17 TCGA-AG-3732-01 12 129190736 129190736 G A TMEM132C Missense_Mutation p.V1075I 0.37 tolerated(0.1) benign(0.004) TCGA-AG-3732-01 12 52761098 52761098 C T KRT85 Missense_Mutation p.R31H 0.31 tolerated(0.47) probably_damaging(0.991) TCGA-AG-3732-01 12 69136265 69136265 A G NUP107 3'UTR 0.31 TCGA-AG-3732-01 14 103988688 103988688 G C CKB Missense_Mutation p.P48R 0.30 deleterious(0) possibly_damaging(0.905) TCGA-AG-3732-01 14 106091490 106091490 C T IGHG4 Missense_Mutation p.R135Q 0.22 tolerated(0.38) benign(0.049) TCGA-AG-3732-01 14 50245175 50245175 A - KLHDC2 Frame_Shift_Del p.D199Vfs*11 0.26 TCGA-AG-3732-01 14 52509009 52509009 C T NID2 Missense_Mutation p.V547M 0.22 deleterious(0.02) probably_damaging(0.945) TCGA-AG-3732-01 14 64989449 64989449 C G ZBTB1 Missense_Mutation p.N409K 0.34 tolerated(0.94) benign(0.014) TCGA-AG-3732-01 15 101566295 101566295 C T LRRK1 Silent p.S786S 0.36 TCGA-AG-3732-01 15 42839667 42839667 T C LRRC57 Missense_Mutation p.N95S 0.58 deleterious(0) probably_damaging(0.957) TCGA-AG-3732-01 15 91026787 91026787 C A IQGAP1 Silent p.I1250I 0.21 TCGA-AG-3732-01 16 1260600 1260600 C T CACNA1H Silent p.S1329S 0.39 TCGA-AG-3732-01 16 19126421 19126423 CAC - ITPRIPL2 In_Frame_Del p.P215del 0.42 TCGA-AG-3732-01 16 2029888 2029903 CTCCACCAGCCACCAG - NOXO1 Frame_Shift_Del p.W202Tfs*29 0.29 TCGA-AG-3732-01 16 20753048 20753048 G A THUMPD1 Missense_Mutation p.A5V 0.52 tolerated_low_confidence(0.87) benign(0.001) TCGA-AG-3732-01 16 25251325 25251325 G A ZKSCAN2 Missense_Mutation p.R906W 0.37 deleterious(0.03) probably_damaging(0.93) TCGA-AG-3732-01 16 30733516 30733525 ACCTCTCACC - SRCAP Frame_Shift_Del p.K1205Nfs*9 0.50 TCGA-AG-3732-01 16 334394 334394 G A PDIA2 Silent p.P69P 0.24 TCGA-AG-3732-01 16 67977993 67977993 G A LCAT Silent p.P4P 0.46 TCGA-AG-3732-01 16 76556103 76556103 G A CNTNAP4 Missense_Mutation p.A829T 0.45 tolerated(0.21) benign(0.166) TCGA-AG-3732-01 17 21826232 21826232 C T FAM27L RNA 0.33 TCGA-AG-3732-01 17 37879794 37879794 G T ERBB2 Missense_Mutation p.V697L 0.47 deleterious(0) benign(0.318) TCGA-AG-3732-01 17 72938094 72938095 - TCT OTOP3 In_Frame_Ins p.F198dup 0.42 TCGA-AG-3732-01 17 7385827 7385840 CTGGACTCTGGACA - SLC35G6 Frame_Shift_Del p.G176Tfs*69 0.63 TCGA-AG-3732-01 17 7578436 7578439 TGCT - TP53 Frame_Shift_Del p.K164Sfs*5 0.76 TCGA-AG-3732-01 17 79073875 79073875 T C BAIAP2 Missense_Mutation p.S213P 0.14 tolerated(0.25) benign(0.011) TCGA-AG-3732-01 18 19144171 19144171 A T ESCO1 Nonsense_Mutation p.L605* 0.25 TCGA-AG-3732-01 19 15067369 15067369 A T SLC1A6 Missense_Mutation p.F363Y 0.17 deleterious(0.03) benign(0.209) TCGA-AG-3732-01 19 39805292 39805292 C T LRFN1 Missense_Mutation p.G229R 0.32 deleterious(0) possibly_damaging(0.464) TCGA-AG-3732-01 19 51958737 51958737 C T SIGLEC8 Missense_Mutation p.R329Q 0.08 tolerated(0.58) benign(0.114) TCGA-AG-3732-01 19 54663985 54663986 - TGTGAC TMC4 3'UTR 0.28 TCGA-AG-3732-01 1 109897063 109897063 G A SORT1 Missense_Mutation p.L212F 0.13 deleterious(0) possibly_damaging(0.893) TCGA-AG-3732-01 1 144994657 144994657 G T PDE4DIP Silent p.R25R 0.08 TCGA-AG-3732-01 1 197111702 197111702 G A ASPM Silent p.N560N 0.39 TCGA-AG-3732-01 1 220152937 220152955 TAAATGATGTGATGTTCCT - EPRS Frame_Shift_Del p.T1240Rfs*30 0.32 TCGA-AG-3732-01 1 44684098 44684098 G A DMAP1 Missense_Mutation p.R170H 0.35 deleterious(0) probably_damaging(0.991) TCGA-AG-3732-01 1 70385502 70385502 C T LRRC7 Intron 0.47 TCGA-AG-3732-01 1 77876727 77876727 A T AK5 Missense_Mutation p.K318M 0.39 deleterious(0.02) possibly_damaging(0.8) TCGA-AG-3732-01 1 84880643 84880655 TATACTTATAACC - DNASE2B 3'UTR 0.57 TCGA-AG-3732-01 20 45221138 45221138 G A SLC13A3 Silent p.F275F 0.09 TCGA-AG-3732-01 20 57484421 57484421 G T GNAS Missense_Mutation p.R844L 0.35 deleterious(0) probably_damaging(0.999) TCGA-AG-3732-01 20 58515161 58515166 GTCCAG - PPP1R3D 5'UTR 0.37 TCGA-AG-3732-01 20 60589624 60589624 G A TAF4 Silent p.P500P 0.43 TCGA-AG-3732-01 20 858965 858965 G A ANGPT4 Silent p.F353F 0.41 TCGA-AG-3732-01 21 32185378 32185378 T C KRTAP8-1 Missense_Mutation p.Y54C 0.24 deleterious_low_confidence(0.03) benign(0.001) TCGA-AG-3732-01 21 41423988 41424001 TGCCTCTCCAAAGT - DSCAM Frame_Shift_Del p.D1690Gfs*2 0.39 TCGA-AG-3732-01 22 21067594 21067609 AAGATGGCTGCCTGCC - PI4KA Frame_Shift_Del p.W1844Sfs*47 0.14 TCGA-AG-3732-01 22 42293161 42293161 C T SREBF2 Silent p.A867A 0.27 TCGA-AG-3732-01 22 45767392 45767392 G A SMC1B Nonsense_Mutation p.R758* 0.24 TCGA-AG-3732-01 2 121712969 121712969 C T GLI2 Silent p.S202S 0.33 TCGA-AG-3732-01 2 131520172 131520172 C T AMER3 Missense_Mutation p.S176L 0.33 tolerated(1) benign(0.107) TCGA-AG-3732-01 2 216251569 216251569 G A FN1 Silent p.P1485P 0.24 TCGA-AG-3732-01 2 220355198 220355198 G A SPEG Missense_Mutation p.V2997M 0.29 probably_damaging(0.995) TCGA-AG-3732-01 2 226447504 226447504 C T NYAP2 Silent p.Y457Y 0.17 TCGA-AG-3732-01 2 71825736 71825736 C T DYSF Missense_Mutation p.T1206M 0.07 deleterious(0) probably_damaging(1) TCGA-AG-3732-01 2 91805519 91805519 G A AC116050.1 Intron 0.18 TCGA-AG-3732-01 3 107766112 107766112 C T CD47 3'UTR 0.32 TCGA-AG-3732-01 3 121416549 121416549 T C GOLGB1 Missense_Mutation p.N941D 0.19 possibly_damaging(0.457) TCGA-AG-3732-01 3 130735295 130735295 T C ATP2C1 3'UTR 0.14 TCGA-AG-3732-01 3 142144096 142144098 TGG - XRN1 In_Frame_Del p.T198del 0.39 TCGA-AG-3732-01 3 14861729 14861729 C T FGD5 Missense_Mutation p.A384V 0.32 tolerated_low_confidence(0.38) benign(0.002) TCGA-AG-3732-01 3 14862025 14862025 C T FGD5 Missense_Mutation p.R483W 0.43 tolerated(0.07) benign(0.097) TCGA-AG-3732-01 3 150403601 150403601 C T FAM194A Silent p.T237T 0.36 TCGA-AG-3732-01 3 184075022 184075022 G A CLCN2 Missense_Mutation p.R311W 0.07 deleterious(0) probably_damaging(0.999) TCGA-AG-3732-01 3 19436738 19436738 C T KCNH8 Missense_Mutation p.A371V 0.38 deleterious(0) probably_damaging(1) TCGA-AG-3732-01 3 9970142 9970142 C T IL17RC Missense_Mutation p.P415L 0.50 tolerated(0.09) benign(0.014) TCGA-AG-3732-01 4 114279170 114279170 C T ANK2 Silent p.F3132F 0.56 TCGA-AG-3732-01 4 187630478 187630478 G A FAT1 Silent p.I168I 0.59 TCGA-AG-3732-01 4 55955592 55955592 C T KDR Missense_Mutation p.R1118Q 0.06 deleterious(0.02) probably_damaging(0.998) TCGA-AG-3732-01 4 7776610 7776610 C G AFAP1 Missense_Mutation p.G640R 0.58 deleterious(0) probably_damaging(1) TCGA-AG-3732-01 5 114611077 114611077 C T CCDC112 Missense_Mutation p.D252N 0.53 deleterious(0.04) benign(0.046) TCGA-AG-3732-01 5 131976422 131976422 G T RAD50 Missense_Mutation p.G1226V 0.56 deleterious(0) probably_damaging(1) TCGA-AG-3732-01 5 35938662 35938662 C T CAPSL Intron 0.21 TCGA-AG-3732-01 5 3600088 3600088 C T IRX1 Silent p.G342G 0.35 TCGA-AG-3732-01 5 36035970 36035970 C T UGT3A2 Missense_Mutation p.A468T 0.15 tolerated(0.06) probably_damaging(0.941) TCGA-AG-3732-01 5 75913456 75913456 A C F2RL2 Missense_Mutation p.F359C 0.31 deleterious(0) possibly_damaging(0.907) TCGA-AG-3732-01 5 80390708 80390708 A T RASGRF2 Missense_Mutation p.D551V 0.28 deleterious(0) possibly_damaging(0.616) TCGA-AG-3732-01 6 152462343 152462343 G A SYNE1 Missense_Mutation p.T8414M 0.25 possibly_damaging(0.72) TCGA-AG-3732-01 6 33694526 33694535 GGTACTCGGA - IP6K3 Frame_Shift_Del p.S188Qfs*14 0.22 TCGA-AG-3732-01 7 100730765 100730765 G T TRIM56 Nonsense_Mutation p.E58* 0.50 TCGA-AG-3732-01 7 122342385 122342385 A T RNF148 Missense_Mutation p.F140L 0.31 tolerated(0.22) probably_damaging(0.987) TCGA-AG-3732-01 7 149482613 149482613 G A SSPO RNA 0.16 TCGA-AG-3732-01 7 37955773 37955773 G C SFRP4 Missense_Mutation p.L123V 0.30 tolerated(0.08) probably_damaging(0.971) TCGA-AG-3732-01 7 48685185 48685185 G A ABCA13 3'UTR 0.30 TCGA-AG-3732-01 7 56045950 56045950 A C GBAS Missense_Mutation p.K75T 0.06 deleterious(0.01) probably_damaging(0.917) TCGA-AG-3732-01 7 87838725 87838725 C T SRI Missense_Mutation p.R147Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-AG-3732-01 7 90492574 90492574 T C CDK14 Missense_Mutation p.F192S 0.32 deleterious(0) probably_damaging(0.996) TCGA-AG-3732-01 8 145049401 145049428 GCGCCACCCCCGCTGCGCCGGCTCCGCT - PARP10 3'Flank 0.50 TCGA-AG-3732-01 8 62430095 62430095 G A ASPH Silent p.N706N 0.55 TCGA-AG-3732-01 8 73993367 73993367 C T SBSPON Missense_Mutation p.R99H 0.47 deleterious(0) probably_damaging(1) TCGA-AG-3732-01 8 86572323 86572323 T C REXO1L1P 3'UTR 0.15 TCGA-AG-3732-01 9 130487085 130487103 CAGGCGCTGGCGCTGAGCC - TTC16 Frame_Shift_Del p.Q390Lfs*84 0.20 TCGA-AG-3732-01 9 8389254 8389254 G C PTPRD Missense_Mutation p.T1455R 0.04 deleterious(0) probably_damaging(1) TCGA-AG-3732-01 X 12938160 12938160 C T TLR8 Missense_Mutation p.T334M 0.17 tolerated(0.26) benign(0.066) TCGA-AG-3732-01 X 135427606 135427606 C T GPR112 Missense_Mutation p.R581C 0.45 deleterious(0) benign(0.118) TCGA-AG-3732-01 X 142967814 142967814 C A UBE2NL 3'UTR 0.32 TCGA-AG-3732-01 X 154159114 154159114 G A F8 Missense_Mutation p.S984L 0.35 tolerated(1) benign(0.002) TCGA-AG-3732-01 X 48457274 48457274 G A WDR13 Missense_Mutation p.E71K 0.44 tolerated(0.18) benign(0.268) TCGA-AG-3732-01 X 78426661 78426661 C T GPR174 Nonsense_Mutation p.R53* 0.05 TCGA-AG-3732-01 X 86877237 86877237 C A KLHL4 Missense_Mutation p.N317K 0.03 tolerated(0.06) probably_damaging(0.999) TCGA-AG-3742-01 10 122633433 122633433 C A WDR11 Silent p.V518V 0.50 TCGA-AG-3742-01 10 30315078 30315078 C T KIAA1462 Silent p.P1333P 0.42 TCGA-AG-3742-01 10 4889471 4889471 G A AKR1E2 Intron 0.41 TCGA-AG-3742-01 10 49658681 49658681 C T ARHGAP22 Silent p.A513A 0.45 TCGA-AG-3742-01 10 64949056 64949056 C A JMJD1C Missense_Mutation p.D2148Y 0.04 deleterious(0) benign(0.372) TCGA-AG-3742-01 10 697123 697123 G A PRR26 Missense_Mutation p.V206I 0.38 benign(0) TCGA-AG-3742-01 10 72360525 72360525 C A PRF1 Missense_Mutation p.G45V 0.43 deleterious(0) probably_damaging(0.999) TCGA-AG-3742-01 10 74804762 74804762 C T P4HA1 Silent p.T375T 0.38 TCGA-AG-3742-01 10 95720737 95720737 A T PIPSL RNA 0.37 TCGA-AG-3742-01 11 1024980 1024980 G A MUC6 Missense_Mutation p.S1030L 0.42 unknown(0) TCGA-AG-3742-01 11 113860381 113860381 G A HTR3A Missense_Mutation p.V483M 0.38 deleterious(0.02) probably_damaging(0.986) TCGA-AG-3742-01 11 124489410 124489410 C T PANX3 Missense_Mutation p.T253I 0.14 tolerated(0.06) benign(0.002) TCGA-AG-3742-01 11 1258343 1258343 G A MUC5B Silent p.Q1082Q 0.19 TCGA-AG-3742-01 11 17757798 17757798 C T KCNC1 Silent p.C83C 0.39 TCGA-AG-3742-01 11 24750801 24750801 G T LUZP2 Missense_Mutation p.R50I 0.32 tolerated(0.08) possibly_damaging(0.653) TCGA-AG-3742-01 11 56344266 56344266 C T OR5M10 Missense_Mutation p.C311Y 0.40 tolerated(1) benign(0) TCGA-AG-3742-01 11 56344267 56344267 A G OR5M10 Missense_Mutation p.C311R 0.40 tolerated(0.37) benign(0) TCGA-AG-3742-01 11 59811097 59811097 C T OOSP2 Missense_Mutation p.R74C 0.48 tolerated(0.17) benign(0.017) TCGA-AG-3742-01 11 61632668 61632668 C T FADS2 Missense_Mutation p.P401L 0.33 deleterious(0) probably_damaging(0.987) TCGA-AG-3742-01 11 63067071 63067071 G A SLC22A10 Missense_Mutation p.R347H 0.08 deleterious(0.03) possibly_damaging(0.648) TCGA-AG-3742-01 11 71507139 71507139 G C FAM86C1 Missense_Mutation p.S113T 0.21 tolerated(0.37) benign(0.058) TCGA-AG-3742-01 11 74047558 74047558 A G PGM2L1 3'UTR 0.32 TCGA-AG-3742-01 11 76830139 76830139 C T CAPN5 Missense_Mutation p.R411W 0.41 deleterious(0) probably_damaging(0.913) TCGA-AG-3742-01 11 85445096 85445096 C G SYTL2 Missense_Mutation p.E425Q 0.38 tolerated(0.43) benign(0.009) TCGA-AG-3742-01 11 94113833 94113833 G A GPR83 Missense_Mutation p.L252F 0.28 tolerated(0.07) probably_damaging(1) TCGA-AG-3742-01 12 109536404 109536404 G A UNG Silent p.K100K 0.38 TCGA-AG-3742-01 12 121454184 121454184 G A C12orf43 Missense_Mutation p.P32S 0.38 deleterious(0.02) benign(0.025) TCGA-AG-3742-01 12 12311913 12311913 C T LRP6 Missense_Mutation p.V881I 0.37 deleterious(0.04) possibly_damaging(0.704) TCGA-AG-3742-01 12 123430600 123430600 G A ABCB9 Missense_Mutation p.A408V 0.45 tolerated(0.18) possibly_damaging(0.612) TCGA-AG-3742-01 12 132400633 132400633 C T ULK1 Missense_Mutation p.R603W 0.25 deleterious(0.02) probably_damaging(0.989) TCGA-AG-3742-01 12 25380275 25380275 T G KRAS Missense_Mutation p.Q61H 0.38 deleterious(0) benign(0.371) TCGA-AG-3742-01 12 50536911 50536911 C T CERS5 Missense_Mutation p.R127H 0.38 deleterious(0) probably_damaging(0.965) TCGA-AG-3742-01 12 52162736 52162736 C A SCN8A Missense_Mutation p.L997I 0.32 tolerated(0.09) possibly_damaging(0.773) TCGA-AG-3742-01 12 59271440 59271440 T A LRIG3 Missense_Mutation p.S760C 0.39 deleterious(0.01) possibly_damaging(0.762) TCGA-AG-3742-01 12 80663931 80663931 G C OTOGL Missense_Mutation p.A830P 0.36 tolerated(0.27) benign(0.001) TCGA-AG-3742-01 12 9354931 9354931 C T PZP Missense_Mutation p.R155H 0.34 tolerated(1) benign(0.001) TCGA-AG-3742-01 13 25745184 25745184 G A AMER2 Missense_Mutation p.R192W 0.18 deleterious(0) probably_damaging(0.997) TCGA-AG-3742-01 13 27333439 27333439 C T GPR12 Missense_Mutation p.V176I 0.36 tolerated(0.25) benign(0.008) TCGA-AG-3742-01 13 51950187 51950187 C T INTS6 Missense_Mutation p.E576K 0.24 tolerated(0.15) benign(0.119) TCGA-AG-3742-01 13 61985962 61985962 G T PCDH20 Missense_Mutation p.S757Y 0.05 deleterious(0) probably_damaging(0.961) TCGA-AG-3742-01 14 27064655 27064655 C A NOVA1 Missense_Mutation p.A81S 0.63 deleterious(0) unknown(0) TCGA-AG-3742-01 14 70459139 70459139 G A SMOC1 Missense_Mutation p.G178R 0.74 tolerated(0.08) probably_damaging(1) TCGA-AG-3742-01 14 77797491 77797491 T C GSTZ1 Missense_Mutation p.S202P 0.43 deleterious(0) possibly_damaging(0.836) TCGA-AG-3742-01 15 20658930 20658930 A G HERC2P3 RNA 0.13 TCGA-AG-3742-01 16 12758911 12758911 G A CPPED1 Silent p.L259L 0.42 TCGA-AG-3742-01 16 16418946 16418946 T C PKD1P1 RNA 0.18 TCGA-AG-3742-01 16 20432711 20432711 T C ACSM5 Missense_Mutation p.V252A 0.40 tolerated(0.59) benign(0.002) TCGA-AG-3742-01 16 21734241 21734241 T - OTOA Frame_Shift_Del p.W608Gfs*36 0.32 TCGA-AG-3742-01 16 25251333 25251333 C A ZKSCAN2 Missense_Mutation p.R903L 0.28 tolerated(0.18) probably_damaging(0.999) TCGA-AG-3742-01 16 30393171 30393171 C T SEPT1 Missense_Mutation p.R77Q 0.39 benign(0.308) TCGA-AG-3742-01 16 31434699 31434699 G C ITGAD Silent p.L962L 0.34 TCGA-AG-3742-01 16 3293889 3293889 G A MEFV Missense_Mutation p.P588L 0.31 tolerated(0.19) benign(0.013) TCGA-AG-3742-01 16 50707891 50707891 G A SNX20 Missense_Mutation p.A126V 0.32 tolerated(0.14) benign(0.166) TCGA-AG-3742-01 16 57965691 57965691 G A CNGB1 Silent p.T488T 0.39 TCGA-AG-3742-01 16 64984824 64984824 C T CDH11 Silent p.P580P 0.44 TCGA-AG-3742-01 17 2323838 2323838 G A METTL16 Missense_Mutation p.T372M 0.57 deleterious(0.02) possibly_damaging(0.792) TCGA-AG-3742-01 17 25752577 25752577 A T TBC1D3P5 RNA 0.36 TCGA-AG-3742-01 17 43195705 43195705 C A PLCD3 Silent p.L356L 0.41 TCGA-AG-3742-01 17 54969505 54969505 C A TRIM25 Missense_Mutation p.E483D 0.37 tolerated(1) benign(0.009) TCGA-AG-3742-01 17 72341014 72341014 C T KIF19 Missense_Mutation p.R233W 0.42 deleterious(0) probably_damaging(0.997) TCGA-AG-3742-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.50 tolerated(0.13) possibly_damaging(0.631) TCGA-AG-3742-01 18 24035775 24035775 G A KCTD1 Missense_Mutation p.R236W 0.38 tolerated(0.18) benign(0.001) TCGA-AG-3742-01 18 43253775 43253775 C T SLC14A2 Silent p.I835I 0.79 TCGA-AG-3742-01 18 8824820 8824820 C T SOGA2 Silent p.D1104D 0.58 TCGA-AG-3742-01 19 15510133 15510133 C T AKAP8L Silent p.Q379Q 0.41 TCGA-AG-3742-01 19 17945506 17945506 G A JAK3 Nonsense_Mutation p.Q742* 0.29 TCGA-AG-3742-01 19 21609440 21609440 A T ZNF493 3'UTR 0.33 TCGA-AG-3742-01 19 3150215 3150215 G A GNA15 Nonsense_Mutation p.W139* 0.42 TCGA-AG-3742-01 19 42398314 42398314 C T ARHGEF1 Missense_Mutation p.R242C 0.45 deleterious(0) possibly_damaging(0.761) TCGA-AG-3742-01 19 43529004 43529004 A G PSG11 Missense_Mutation p.I90T 0.35 tolerated(1) benign(0.219) TCGA-AG-3742-01 19 45992810 45992810 C T RTN2 Silent p.V345V 0.38 TCGA-AG-3742-01 19 49409126 49409126 C T NUCB1 Silent p.D120D 0.42 TCGA-AG-3742-01 19 55284980 55284980 G A KIR2DL1 Missense_Mutation p.R89H 0.40 deleterious(0) benign(0.385) TCGA-AG-3742-01 19 55693158 55693158 G A PTPRH Silent p.N1104N 0.44 TCGA-AG-3742-01 19 8209823 8209823 C T FBN3 Missense_Mutation p.R160H 0.37 deleterious(0) probably_damaging(0.91) TCGA-AG-3742-01 19 9059278 9059278 C T MUC16 Missense_Mutation p.A9390T 0.41 unknown(0) TCGA-AG-3742-01 1 113161717 113161717 C T ST7L Missense_Mutation p.V7M 0.44 tolerated_low_confidence(0.06) benign(0.002) TCGA-AG-3742-01 1 1274711 1274711 C T DVL1 Intron 0.34 TCGA-AG-3742-01 1 153941071 153941071 T C CREB3L4 Missense_Mutation p.S24P 0.34 tolerated_low_confidence(0.1) benign(0.02) TCGA-AG-3742-01 1 154318887 154318887 C A ATP8B2 Missense_Mutation p.L1020M 0.05 tolerated(0.1) probably_damaging(0.999) TCGA-AG-3742-01 1 158450362 158450362 T G OR10R2 Missense_Mutation p.L232R 0.05 tolerated(0.22) possibly_damaging(0.675) TCGA-AG-3742-01 1 158517533 158517533 A T OR6Y1 Silent p.A121A 0.36 TCGA-AG-3742-01 1 166926048 166926048 C T ILDR2 Missense_Mutation p.G141R 0.32 deleterious(0) probably_damaging(1) TCGA-AG-3742-01 1 181740472 181740472 G A CACNA1E Missense_Mutation p.R1642Q 0.39 tolerated(0.36) possibly_damaging(0.553) TCGA-AG-3742-01 1 241959600 241959600 C T WDR64 Silent p.G1030G 0.46 TCGA-AG-3742-01 1 248344048 248344048 C A OR2M2 Missense_Mutation p.A254E 0.08 deleterious(0) probably_damaging(0.984) TCGA-AG-3742-01 1 249141646 249141646 G A ZNF672 Missense_Mutation p.R58Q 0.48 deleterious(0.04) benign(0.02) TCGA-AG-3742-01 1 42045588 42045588 G A HIVEP3 Silent p.Y1627Y 0.39 TCGA-AG-3742-01 1 47400785 47400785 T C CYP4A11 Missense_Mutation p.N226S 0.44 tolerated(0.41) benign(0.009) TCGA-AG-3742-01 1 6527628 6527628 C T PLEKHG5 Missense_Mutation p.V1085I 0.48 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-AG-3742-01 20 18143316 18143316 C T CSRP2BP Silent p.Y466Y 0.77 TCGA-AG-3742-01 20 21376859 21376859 G A NKX2-4 Missense_Mutation p.A252V 0.21 tolerated(0.14) benign(0.073) TCGA-AG-3742-01 20 30584381 30584381 G A XKR7 Silent p.S287S 0.20 TCGA-AG-3742-01 20 35575190 35575190 C T SAMHD1 Missense_Mutation p.A76T 0.18 tolerated(0.25) benign(0.007) TCGA-AG-3742-01 20 36869092 36869092 G T KIAA1755 Missense_Mutation p.Q481K 0.68 tolerated(0.93) benign(0.021) TCGA-AG-3742-01 21 35237600 35237600 A C ITSN1 Missense_Mutation p.K1346Q 0.44 deleterious(0.01) probably_damaging(0.915) TCGA-AG-3742-01 21 44592355 44592355 C T CRYAA Missense_Mutation p.R163W 0.46 tolerated(0.14) benign(0.43) TCGA-AG-3742-01 22 19839566 19839566 G A C22orf29 Silent p.G73G 0.37 TCGA-AG-3742-01 22 25597342 25597342 A G CRYBB3 Splice_Site 0.42 TCGA-AG-3742-01 22 26743766 26743766 G A SEZ6L Missense_Mutation p.R765Q 0.46 tolerated(0.1) probably_damaging(1) TCGA-AG-3742-01 22 29924436 29924436 A G THOC5 Silent p.D315D 0.20 TCGA-AG-3742-01 22 50644858 50644858 G A SELO Missense_Mutation p.E223K 0.42 deleterious(0.04) benign(0.014) TCGA-AG-3742-01 22 50662947 50662947 T C TUBGCP6 Silent p.A686A 0.36 TCGA-AG-3742-01 2 130832263 130832263 C T POTEF Missense_Mutation p.A928T 0.21 tolerated_low_confidence(0.06) possibly_damaging(0.881) TCGA-AG-3742-01 2 135630172 135630172 T A ACMSD Missense_Mutation p.D270E 0.34 deleterious(0.04) probably_damaging(0.955) TCGA-AG-3742-01 2 179560732 179560732 A T TTN Missense_Mutation p.V10356D 0.42 TCGA-AG-3742-01 2 21232202 21232202 C T APOB Missense_Mutation p.R2513Q 0.46 benign(0.001) TCGA-AG-3742-01 2 242148982 242148982 G A ANO7 Missense_Mutation p.E485K 0.47 deleterious(0.01) possibly_damaging(0.723) TCGA-AG-3742-01 2 27459632 27459632 G T CAD Missense_Mutation p.G1444W 0.39 deleterious(0.01) probably_damaging(0.97) TCGA-AG-3742-01 2 27719726 27719726 T G GCKR 5'UTR 0.36 TCGA-AG-3742-01 2 43452439 43452440 - C ZFP36L2 Frame_Shift_Ins p.C168Wfs*306 0.38 TCGA-AG-3742-01 2 71886082 71886082 C T DYSF Silent p.A1610A 0.37 TCGA-AG-3742-01 3 126751257 126751257 G T PLXNA1 Silent p.V1753V 0.39 TCGA-AG-3742-01 3 178936095 178936095 A G PIK3CA Missense_Mutation p.Q546R 0.59 deleterious(0.02) probably_damaging(0.984) TCGA-AG-3742-01 3 19295236 19295236 C - KCNH8 Frame_Shift_Del p.R57Efs*23 0.26 TCGA-AG-3742-01 3 42956925 42956925 A C ZNF662 3'UTR 0.47 TCGA-AG-3742-01 3 98251220 98251220 G A GPR15 Missense_Mutation p.V115I 0.41 deleterious(0.01) probably_damaging(0.939) TCGA-AG-3742-01 4 104640303 104640303 G A TACR3 Missense_Mutation p.T177M 0.37 tolerated(0.12) probably_damaging(0.989) TCGA-AG-3742-01 4 126411432 126411432 G A FAT4 Silent p.A4485A 0.36 TCGA-AG-3742-01 4 153245446 153245446 G A FBXW7 Missense_Mutation p.S582L 0.69 tolerated(0.15) probably_damaging(0.996) TCGA-AG-3742-01 4 40104123 40104123 G A N4BP2 Missense_Mutation p.V220I 0.41 tolerated(0.4) benign(0.014) TCGA-AG-3742-01 4 533022 533022 C A PIGG Missense_Mutation p.T939K 0.38 deleterious(0) possibly_damaging(0.792) TCGA-AG-3742-01 4 60044 60044 C T ZNF595 Missense_Mutation p.P75L 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-AG-3742-01 4 89978129 89978129 G A FAM13A 5'UTR 0.42 TCGA-AG-3742-01 4 96762083 96762083 G A PDHA2 Missense_Mutation p.R261H 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-AG-3742-01 5 102474135 102474135 G A PPIP5K2 Missense_Mutation p.R150H 0.38 deleterious(0) probably_damaging(0.916) TCGA-AG-3742-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.37 TCGA-AG-3742-01 5 112175198 112175198 C T APC Nonsense_Mutation p.Q1303* 0.40 TCGA-AG-3742-01 5 1245978 1245978 C T SLC6A18 Missense_Mutation p.R558C 0.33 deleterious(0.02) probably_damaging(0.953) TCGA-AG-3742-01 5 13717498 13717498 C A DNAH5 Nonsense_Mutation p.E4211* 0.36 TCGA-AG-3742-01 5 140209752 140209752 G A PCDHA6 Silent p.A692A 0.11 TCGA-AG-3742-01 5 140250778 140250778 T - PCDHA11 Frame_Shift_Del p.V697Gfs*3 0.47 TCGA-AG-3742-01 5 140725268 140725268 C T PCDHGA3 Silent p.N556N 0.44 TCGA-AG-3742-01 5 140755454 140755454 G A PCDHGA6 Missense_Mutation p.A602T 0.46 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-AG-3742-01 5 148730567 148730567 G T GRPEL2 Nonsense_Mutation p.E134* 0.44 TCGA-AG-3742-01 5 149421418 149421418 G A HMGXB3 Silent p.E872E 0.31 TCGA-AG-3742-01 5 149421419 149421419 T G HMGXB3 Missense_Mutation p.C873G 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-AG-3742-01 5 178413956 178413956 G A GRM6 Silent p.N461N 0.25 TCGA-AG-3742-01 5 33938160 33938160 G A RXFP3 Missense_Mutation p.A439T 0.26 tolerated(0.27) benign(0.003) TCGA-AG-3742-01 5 70671642 70671643 - A RP11-136K7.2 Intron 0.29 TCGA-AG-3742-01 5 73931301 73931301 G A ENC1 Missense_Mutation p.A337V 0.35 deleterious(0.01) possibly_damaging(0.887) TCGA-AG-3742-01 6 121768474 121768474 T C GJA1 Missense_Mutation p.F161L 0.04 deleterious(0.04) benign(0.011) TCGA-AG-3742-01 6 131940992 131940992 G - MED23 Frame_Shift_Del p.T215Qfs*4 0.11 TCGA-AG-3742-01 6 136599122 136599122 T C BCLAF1 Silent p.R299R 0.20 TCGA-AG-3742-01 6 1390681 1390681 C T FOXF2 Missense_Mutation p.R167W 0.35 deleterious(0) probably_damaging(1) TCGA-AG-3742-01 6 143090731 143090731 G A HIVEP2 Silent p.T1715T 0.42 TCGA-AG-3742-01 6 150267608 150267608 C G ULBP2 Silent p.L150L 0.35 TCGA-AG-3742-01 6 152485384 152485384 C T SYNE1 Missense_Mutation p.A7902T 0.47 benign(0.009) TCGA-AG-3742-01 6 161020531 161020531 C T LPA Splice_Site p.X1096_splice 0.32 TCGA-AG-3742-01 6 31097403 31097403 T G PSORS1C1 5'UTR 0.37 TCGA-AG-3742-01 6 31933753 31933753 G A SKIV2L Missense_Mutation p.R722Q 0.39 tolerated(0.47) benign(0.004) TCGA-AG-3742-01 6 73951352 73951352 G A KHDC1 Missense_Mutation p.A205V 0.47 tolerated_low_confidence(0.22) possibly_damaging(0.866) TCGA-AG-3742-01 6 79692787 79692787 T C PHIP Missense_Mutation p.N862S 0.38 tolerated(0.05) probably_damaging(0.931) TCGA-AG-3742-01 7 121773696 121773696 G A AASS Missense_Mutation p.R29W 0.28 deleterious(0) probably_damaging(1) TCGA-AG-3742-01 7 134613584 134613584 C T CALD1 Missense_Mutation p.R51W 0.36 deleterious(0) unknown(0) TCGA-AG-3742-01 7 149462747 149462747 G A ZNF467 Missense_Mutation p.R282C 0.29 deleterious(0.02) probably_damaging(0.983) TCGA-AG-3742-01 7 30693202 30693202 C T CRHR2 Silent p.V397V 0.42 TCGA-AG-3742-01 7 57188404 57188404 G T ZNF479 Missense_Mutation p.P240T 0.26 deleterious(0.02) benign(0.395) TCGA-AG-3742-01 7 70880968 70880968 G A WBSCR17 Missense_Mutation p.R228H 0.56 tolerated(0.09) possibly_damaging(0.807) TCGA-AG-3742-01 7 72412505 72412505 C T POM121 Missense_Mutation p.P393L 0.20 tolerated(0.09) benign(0.006) TCGA-AG-3742-01 7 76062905 76062905 G A ZP3 Silent p.V218V 0.31 TCGA-AG-3742-01 7 98257797 98257797 C T NPTX2 Silent p.R384R 0.26 TCGA-AG-3742-01 8 110587791 110587791 C T SYBU Missense_Mutation p.V446M 0.16 tolerated(0.24) benign(0.025) TCGA-AG-3742-01 8 110587792 110587792 T A SYBU Silent p.I445I 0.15 TCGA-AG-3742-01 8 110587793 110587793 A T SYBU Missense_Mutation p.I445K 0.16 tolerated(0.13) benign(0.124) TCGA-AG-3742-01 8 144943713 144943713 C G EPPK1 Missense_Mutation p.A1237P 0.73 possibly_damaging(0.462) TCGA-AG-3742-01 8 25246747 25246747 G T DOCK5 Missense_Mutation p.Q1424H 0.70 deleterious(0.01) benign(0.019) TCGA-AG-3742-01 8 39468230 39468230 C A ADAM18 Intron 0.65 TCGA-AG-3742-01 8 39780140 39780140 G A IDO1 Silent p.L169L 0.62 TCGA-AG-3742-01 8 51306773 51306773 C T SNTG1 Intron 0.40 TCGA-AG-3742-01 8 65509289 65509289 A G CYP7B1 Silent p.D477D 0.37 TCGA-AG-3742-01 8 74204636 74204636 C T RPL7 Missense_Mutation p.R43Q 0.73 tolerated(0.39) benign(0.023) TCGA-AG-3742-01 9 139694861 139694861 C G CCDC183 Missense_Mutation p.N153K 0.63 deleterious(0) probably_damaging(0.999) TCGA-AG-3742-01 9 14868843 14868843 C T FREM1 Missense_Mutation p.D45N 0.40 tolerated(0.39) benign(0.016) TCGA-AG-3742-01 9 2718826 2718826 G A KCNV2 Missense_Mutation p.G363S 0.22 tolerated(0.82) benign(0.236) TCGA-AG-3742-01 9 34996273 34996273 G A DNAJB5 Missense_Mutation p.G189S 0.54 tolerated(0.13) benign(0.383) TCGA-AG-3742-01 9 36171245 36171245 C G CCIN Missense_Mutation p.C582W 0.08 tolerated(0.17) probably_damaging(0.969) TCGA-AG-3742-01 9 70917833 70917833 G A FOXD4L3 5'UTR 0.15 TCGA-AG-3742-01 X 105159726 105159726 A T NRK Missense_Mutation p.Q786L 0.56 deleterious(0) possibly_damaging(0.736) TCGA-AG-3742-01 X 107319439 107319439 C T VSIG1 Missense_Mutation p.A310V 0.24 deleterious(0.01) benign(0.107) TCGA-AG-3742-01 X 118220751 118220751 T G KIAA1210 Missense_Mutation p.K1481T 0.29 deleterious(0) benign(0.075) TCGA-AG-3742-01 X 119005370 119005370 C T RNF113A Silent p.K69K 0.24 TCGA-AG-3742-01 X 120094437 120094437 C T CT47A6 Missense_Mutation p.A216T 0.27 tolerated(0.18) possibly_damaging(0.695) TCGA-AG-3742-01 X 125298907 125298907 G A DCAF12L2 Missense_Mutation p.P334L 0.29 tolerated(0.58) benign(0.003) TCGA-AG-3742-01 X 12995111 12995114 TCTA - TMSB4X 3'UTR 0.21 TCGA-AG-3742-01 X 152686134 152686134 C T ZFP92 Missense_Mutation p.T100M 0.34 tolerated(0.07) benign(0.197) TCGA-AG-3742-01 X 152686804 152686804 C T ZFP92 Silent p.R323R 0.29 TCGA-AG-3742-01 X 153881592 153881592 G A CTAG2 Silent p.G66G 0.63 TCGA-AG-3742-01 X 154091387 154091387 C T F8 Missense_Mutation p.R2182H 0.29 deleterious(0) probably_damaging(1) TCGA-AG-3742-01 X 18606247 18606247 G A CDKL5 Missense_Mutation p.R243H 0.29 deleterious_low_confidence(0.03) benign(0) TCGA-AG-3742-01 X 205504 205504 C T PLCXD1 Missense_Mutation p.R78C 0.58 deleterious(0) probably_damaging(0.982) TCGA-AG-3742-01 X 43601226 43601227 - GAG MAOA In_Frame_Ins p.E400dup 0.27 TCGA-AG-3742-01 X 50114798 50114798 G A DGKK RNA 0.57 TCGA-AG-3742-01 X 54777505 54777505 G T ITIH6 Missense_Mutation p.Q1221K 0.33 deleterious(0.05) benign(0.019) TCGA-AG-3742-01 X 55042055 55042055 C T ALAS2 Missense_Mutation p.R375H 0.65 deleterious(0.02) probably_damaging(0.997) TCGA-AG-3742-01 X 67943553 67943553 G A STARD8 Missense_Mutation p.R962Q 0.22 deleterious(0) probably_damaging(0.984) TCGA-AG-4021-01 10 116889212 116889212 C A ATRNL1 Nonsense_Mutation p.Y248* 0.41 TCGA-AG-4021-01 10 124402798 124402798 C T DMBT1 Nonsense_Mutation p.R2376* 0.42 TCGA-AG-4021-01 10 26581917 26581917 G A GAD2 Silent p.S527S 0.27 TCGA-AG-4021-01 10 89711874 89711874 G A PTEN Splice_Site p.X165_splice 0.61 TCGA-AG-4021-01 11 100820687 100820687 A G ARHGAP42 Missense_Mutation p.M388V 0.39 tolerated(0.23) benign(0) TCGA-AG-4021-01 11 1080986 1080986 T A MUC2 Splice_Site p.X456_splice 0.41 TCGA-AG-4021-01 11 15994311 15994311 G T SOX6 3'UTR 0.21 TCGA-AG-4021-01 11 22777470 22777470 C T GAS2 Nonsense_Mutation p.R232* 0.40 TCGA-AG-4021-01 11 55322384 55322384 C T OR4C15 Missense_Mutation p.A201V 0.37 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-AG-4021-01 11 64397897 64397897 G A NRXN2 Missense_Mutation p.P1245L 0.45 deleterious(0) probably_damaging(0.975) TCGA-AG-4021-01 11 6647458 6647458 C T DCHS1 Missense_Mutation p.R2173Q 0.43 tolerated(0.44) benign(0) TCGA-AG-4021-01 11 89182657 89182657 T G NOX4 Missense_Mutation p.K100N 0.40 deleterious(0) probably_damaging(0.988) TCGA-AG-4021-01 11 94602636 94602636 T A AMOTL1 Missense_Mutation p.L921Q 0.43 tolerated(0.25) benign(0.004) TCGA-AG-4021-01 12 117768169 117768169 T C NOS1 Missense_Mutation p.M236V 0.50 tolerated_low_confidence(0.72) benign(0) TCGA-AG-4021-01 12 121458597 121458597 C T OASL Missense_Mutation p.V438M 0.08 deleterious(0) probably_damaging(0.932) TCGA-AG-4021-01 12 132539718 132539718 C T EP400 Missense_Mutation p.R2617C 0.47 benign(0.066) TCGA-AG-4021-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.45 deleterious(0) possibly_damaging(0.479) TCGA-AG-4021-01 12 82792935 82792935 C T METTL25 Missense_Mutation p.S298F 0.33 deleterious(0.01) benign(0.155) TCGA-AG-4021-01 13 114138283 114138283 G A DCUN1D2 Missense_Mutation p.T31M 0.36 tolerated(0.12) benign(0.34) TCGA-AG-4021-01 13 36521536 36521536 T G DCLK1 Missense_Mutation p.E261A 0.14 deleterious(0) unknown(0) TCGA-AG-4021-01 13 50235304 50235304 C T EBPL Missense_Mutation p.G141S 0.33 deleterious(0.03) probably_damaging(0.95) TCGA-AG-4021-01 13 76408471 76408471 G T LMO7 Missense_Mutation p.K825N 0.76 tolerated(1) benign(0.004) TCGA-AG-4021-01 14 105179226 105179226 G A INF2 Missense_Mutation p.R891Q 0.27 tolerated(0.57) unknown(0) TCGA-AG-4021-01 14 20404296 20404296 G A OR4K1 Silent p.V157V 0.30 TCGA-AG-4021-01 14 20841945 20841945 G A TEP1 Missense_Mutation p.R2166W 0.42 deleterious(0.03) probably_damaging(0.994) TCGA-AG-4021-01 14 57114162 57114162 C G TMEM260 Missense_Mutation p.L691V 0.41 tolerated(0.79) benign(0.002) TCGA-AG-4021-01 14 60070604 60070604 G A RTN1 Silent p.G716G 0.10 TCGA-AG-4021-01 14 61180840 61180840 A G SIX4 Missense_Mutation p.F544S 0.55 deleterious(0.01) benign(0.268) TCGA-AG-4021-01 14 86088133 86088133 C T FLRT2 Missense_Mutation p.T92M 0.37 tolerated(0.05) possibly_damaging(0.749) TCGA-AG-4021-01 15 34032157 34032157 C T RYR3 Missense_Mutation p.A2594V 0.40 benign(0.094) TCGA-AG-4021-01 15 44158524 44158524 G A WDR76 Silent p.R605R 0.29 TCGA-AG-4021-01 15 65113574 65113574 G A PIF1 Silent p.A321A 0.42 TCGA-AG-4021-01 15 69324079 69324079 G C NOX5 Missense_Mutation p.G183R 0.47 deleterious(0.02) possibly_damaging(0.558) TCGA-AG-4021-01 15 74032916 74032916 G A C15orf59 Missense_Mutation p.T75M 0.43 deleterious(0.05) probably_damaging(0.999) TCGA-AG-4021-01 15 76958131 76958131 C T SCAPER Splice_Site p.X837_splice 0.63 TCGA-AG-4021-01 16 11133659 11133659 C T CLEC16A Missense_Mutation p.A529V 0.35 tolerated(0.19) benign(0.003) TCGA-AG-4021-01 16 2283951 2283951 G A E4F1 Silent p.P445P 0.36 TCGA-AG-4021-01 16 31051066 31051066 G A STX4 Missense_Mutation p.C279Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-AG-4021-01 16 55854357 55854357 C T CES1 Missense_Mutation p.R243Q 0.22 deleterious(0.02) benign(0.305) TCGA-AG-4021-01 16 66946732 66946732 C T CDH16 Missense_Mutation p.V373I 0.35 tolerated(1) benign(0.009) TCGA-AG-4021-01 16 70913641 70913641 C T HYDIN Missense_Mutation p.D3412N 0.20 probably_damaging(0.913) TCGA-AG-4021-01 16 9857538 9857538 C T GRIN2A Missense_Mutation p.R1288H 0.51 deleterious(0) probably_damaging(1) TCGA-AG-4021-01 17 20841478 20841478 C A RP11-381P6.1 5'Flank 0.44 TCGA-AG-4021-01 17 38928345 38928345 A - KRT26 Frame_Shift_Del p.G8Dfs*78 0.39 TCGA-AG-4021-01 17 38936612 38936612 C T KRT27 Silent p.L208L 0.35 TCGA-AG-4021-01 17 39636904 39636904 C T KRT35 Missense_Mutation p.R149Q 0.40 tolerated(0.24) benign(0.023) TCGA-AG-4021-01 17 40364191 40364191 G A STAT5B Silent p.A497A 0.30 TCGA-AG-4021-01 17 42333104 42333104 G A SLC4A1 Silent p.A579A 0.46 TCGA-AG-4021-01 17 51900501 51900501 G A KIF2B Missense_Mutation p.R36H 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-AG-4021-01 17 63554398 63554398 C A AXIN2 Missense_Mutation p.C114F 0.40 deleterious(0) probably_damaging(1) TCGA-AG-4021-01 17 67087392 67087392 G A ABCA6 Silent p.I1140I 0.35 TCGA-AG-4021-01 17 7578235 7578235 T G TP53 Missense_Mutation p.Y205S 0.60 deleterious(0) possibly_damaging(0.523) TCGA-AG-4021-01 17 76462856 76462856 G A DNAH17 Nonsense_Mutation p.R2927* 0.49 TCGA-AG-4021-01 18 7009274 7009274 A G LAMA1 Missense_Mutation p.I1322T 0.10 deleterious(0) probably_damaging(0.982) TCGA-AG-4021-01 18 72775210 72775210 G A ZNF407 Missense_Mutation p.V1845I 0.62 tolerated(0.06) benign(0.023) TCGA-AG-4021-01 19 12155296 12155296 C T ZNF878 Missense_Mutation p.G307E 0.43 deleterious(0.02) probably_damaging(0.937) TCGA-AG-4021-01 19 15366236 15366236 C T BRD4 Missense_Mutation p.R640Q 0.40 benign(0.238) TCGA-AG-4021-01 19 17056363 17056363 A G CPAMD8 Missense_Mutation p.V977A 0.37 deleterious(0.02) benign(0.149) TCGA-AG-4021-01 19 24097749 24097749 G T ZNF726 5'UTR 0.23 TCGA-AG-4021-01 19 2878089 2878089 C T ZNF556 Missense_Mutation p.T378M 0.51 deleterious(0) possibly_damaging(0.523) TCGA-AG-4021-01 19 36049351 36049351 C T ATP4A Silent p.S471S 0.32 TCGA-AG-4021-01 19 46811505 46811505 G T HIF3A Missense_Mutation p.D131Y 0.18 deleterious(0) probably_damaging(0.954) TCGA-AG-4021-01 19 48204897 48204897 G A GLTSCR1 Missense_Mutation p.R1303Q 0.31 probably_damaging(0.999) TCGA-AG-4021-01 19 49552155 49552155 C T CGB8 5'UTR 0.35 TCGA-AG-4021-01 19 54313742 54313742 C A NLRP12 Missense_Mutation p.V391L 0.35 tolerated(0.1) benign(0.017) TCGA-AG-4021-01 19 58370487 58370487 G C ZNF587 Missense_Mutation p.R236T 0.22 tolerated(0.45) benign(0.227) TCGA-AG-4021-01 19 9057247 9057247 C A MUC16 Nonsense_Mutation p.E10067* 0.22 TCGA-AG-4021-01 19 9061629 9061629 C T MUC16 Missense_Mutation p.R8606H 0.42 unknown(0) TCGA-AG-4021-01 1 104162263 104162263 C G AMY2A Missense_Mutation p.L201V 0.42 deleterious(0.01) possibly_damaging(0.816) TCGA-AG-4021-01 1 114449713 114449713 C T DCLRE1B Silent p.L95L 0.11 TCGA-AG-4021-01 1 15789285 15789285 C T CELA2A Silent p.S95S 0.43 TCGA-AG-4021-01 1 168066207 168066207 C T GPR161 Missense_Mutation p.R233H 0.46 deleterious(0) probably_damaging(0.977) TCGA-AG-4021-01 1 182869270 182869270 C T SHCBP1L Missense_Mutation p.V604I 0.30 tolerated(0.21) benign(0.048) TCGA-AG-4021-01 1 197072139 197072139 T C ASPM Missense_Mutation p.K2081R 0.41 tolerated(0.52) benign(0.334) TCGA-AG-4021-01 1 215844467 215844467 C T USH2A Silent p.P4660P 0.45 TCGA-AG-4021-01 1 220174559 220174559 T C EPRS Missense_Mutation p.Y701C 0.43 tolerated(0.11) possibly_damaging(0.642) TCGA-AG-4021-01 1 248084575 248084575 G A OR2T8 Missense_Mutation p.G86R 0.09 deleterious(0.01) possibly_damaging(0.88) TCGA-AG-4021-01 1 248344193 248344193 G T OR2M2 Missense_Mutation p.M302I 0.37 deleterious(0.01) benign(0.006) TCGA-AG-4021-01 1 25893450 25893450 C T LDLRAP1 Silent p.S298S 0.30 TCGA-AG-4021-01 1 27189992 27189992 G A SFN Missense_Mutation p.D97N 0.31 tolerated_low_confidence(1) benign(0) TCGA-AG-4021-01 1 43212802 43212802 G A LEPRE1 Silent p.N732N 0.42 TCGA-AG-4021-01 1 45316566 45316566 C T EIF2B3 3'UTR 0.58 TCGA-AG-4021-01 1 62943480 62943480 T G DOCK7 Missense_Mutation p.Y1811S 0.24 deleterious(0) probably_damaging(0.988) TCGA-AG-4021-01 1 63100524 63100524 G T DOCK7 Missense_Mutation p.P319T 0.35 tolerated(0.36) benign(0) TCGA-AG-4021-01 1 82302610 82302610 C T LPHN2 5'UTR 0.55 TCGA-AG-4021-01 1 92224298 92224298 G A TGFBR3 Missense_Mutation p.H86Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-AG-4021-01 20 50701642 50701642 C T ZFP64 Silent p.K464K 0.42 TCGA-AG-4021-01 21 19653410 19653410 C G TMPRSS15 Missense_Mutation p.R872T 0.28 tolerated(1) benign(0) TCGA-AG-4021-01 21 34954519 34954519 C G DONSON Missense_Mutation p.S333T 0.25 tolerated(0.5) benign(0.008) TCGA-AG-4021-01 21 40551876 40551876 C G PSMG1 Missense_Mutation p.D144H 0.08 deleterious(0) probably_damaging(0.994) TCGA-AG-4021-01 21 43557725 43557725 G A UMODL1 Missense_Mutation p.E1446K 0.59 deleterious(0.04) benign(0.267) TCGA-AG-4021-01 21 46951464 46951464 C T SLC19A1 Missense_Mutation p.R263Q 0.63 tolerated(0.13) possibly_damaging(0.546) TCGA-AG-4021-01 22 19170947 19170947 C G CLTCL1 Missense_Mutation p.A1595P 0.45 deleterious(0.01) possibly_damaging(0.856) TCGA-AG-4021-01 22 46712126 46712126 T C GTSE1 Missense_Mutation p.S417P 0.11 tolerated(0.31) benign(0.006) TCGA-AG-4021-01 22 50696724 50696724 C T MAPK12 Missense_Mutation p.G88R 0.31 deleterious(0) probably_damaging(0.998) TCGA-AG-4021-01 2 105859468 105859468 G A GPR45 3'UTR 0.23 TCGA-AG-4021-01 2 128366303 128366303 C T MYO7B Silent p.A888A 0.41 TCGA-AG-4021-01 2 150426375 150426375 G A MMADHC 3'UTR 0.54 TCGA-AG-4021-01 2 165948893 165948893 G A SCN3A Missense_Mutation p.R1560W 0.34 tolerated(0.37) benign(0.001) TCGA-AG-4021-01 2 166536443 166536443 G C CSRNP3 3'UTR 0.18 TCGA-AG-4021-01 2 170042019 170042019 A G LRP2 Missense_Mutation p.V3280A 0.08 possibly_damaging(0.818) TCGA-AG-4021-01 2 174074401 174074401 T A MLTK Intron 0.31 TCGA-AG-4021-01 2 182339889 182339889 T G ITGA4 Missense_Mutation p.C144G 0.24 deleterious(0) probably_damaging(0.999) TCGA-AG-4021-01 2 206592652 206592652 C A NRP2 Missense_Mutation p.A343E 0.44 deleterious(0.03) probably_damaging(1) TCGA-AG-4021-01 2 217069114 217069114 G A XRCC5 Missense_Mutation p.D727N 0.31 deleterious(0) probably_damaging(0.927) TCGA-AG-4021-01 2 235943704 235943704 G A SH3BP4 Missense_Mutation p.E20K 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AG-4021-01 2 26696022 26696022 C T OTOF Silent p.S1237S 0.42 TCGA-AG-4021-01 2 62228069 62228070 AC - COMMD1 Frame_Shift_Del p.P141Cfs*16 0.24 TCGA-AG-4021-01 2 96628115 96628115 G A ANKRD36C Nonsense_Mutation p.Q296* 0.25 TCGA-AG-4021-01 2 96691710 96691710 C T GPAT2 Silent p.E402E 0.46 TCGA-AG-4021-01 3 126707969 126707969 C T PLXNA1 Missense_Mutation p.P178L 0.35 tolerated(0.06) benign(0.002) TCGA-AG-4021-01 3 129290559 129290559 G A PLXND1 Missense_Mutation p.P1069L 0.38 deleterious(0) probably_damaging(0.999) TCGA-AG-4021-01 3 141497345 141497345 C G GRK7 Missense_Mutation p.F73L 0.39 deleterious(0.01) probably_damaging(0.926) TCGA-AG-4021-01 3 146173181 146173181 A G PLSCR2 Missense_Mutation p.F129L 0.10 tolerated(0.14) benign(0.065) TCGA-AG-4021-01 3 151067911 151067911 G A MED12L Missense_Mutation p.R737H 0.49 deleterious(0) probably_damaging(0.992) TCGA-AG-4021-01 3 179051076 179051076 A T ZNF639 Silent p.V108V 0.37 TCGA-AG-4021-01 3 184044386 184044386 C T EIF4G1 Silent p.S1105S 0.27 TCGA-AG-4021-01 3 194159677 194159677 C T ATP13A3 Missense_Mutation p.E579K 0.39 tolerated(0.17) possibly_damaging(0.589) TCGA-AG-4021-01 3 194790410 194790410 T A XXYLT1 3'UTR 0.57 TCGA-AG-4021-01 3 197803754 197803754 A G ANKRD18DP RNA 0.10 TCGA-AG-4021-01 3 41266635 41266635 T G CTNNB1 Missense_Mutation p.D144E 0.24 deleterious(0.02) benign(0.032) TCGA-AG-4021-01 3 42680570 42680570 C A NKTR Missense_Mutation p.T1125K 0.46 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-AG-4021-01 3 42956012 42956012 T C ZNF662 Silent p.S175S 0.09 TCGA-AG-4021-01 3 45637094 45637094 G A LIMD1 Silent p.E241E 0.31 TCGA-AG-4021-01 3 52522495 52522495 G A NISCH Missense_Mutation p.R996H 0.34 deleterious(0.02) probably_damaging(0.935) TCGA-AG-4021-01 3 54604054 54604054 C T CACNA2D3 Missense_Mutation p.R271C 0.37 deleterious(0) probably_damaging(0.999) TCGA-AG-4021-01 3 57431784 57431784 G A DNAH12 Missense_Mutation p.R1362C 0.35 deleterious(0) possibly_damaging(0.898) TCGA-AG-4021-01 3 81586166 81586166 A G GBE1 Missense_Mutation p.F567L 0.09 tolerated(0.16) possibly_damaging(0.624) TCGA-AG-4021-01 4 114213658 114213658 C T ANK2 Silent p.N788N 0.71 TCGA-AG-4021-01 4 151336593 151336593 T C LRBA Silent p.R2408R 0.10 TCGA-AG-4021-01 4 169279243 169279243 T G DDX60L 3'UTR 0.75 TCGA-AG-4021-01 4 17710799 17710799 G C FAM184B Missense_Mutation p.R204G 0.45 deleterious(0) probably_damaging(0.993) TCGA-AG-4021-01 4 5795443 5795446 GAGT - EVC Splice_Site p.X629_splice 0.22 TCGA-AG-4021-01 4 65188505 65188505 G C TECRL Missense_Mutation p.P113A 0.38 tolerated(0.06) benign(0.004) TCGA-AG-4021-01 4 73156638 73156638 G A ADAMTS3 Silent p.P955P 0.28 TCGA-AG-4021-01 5 112770126 112770126 G T TSSK1B Silent p.L137L 0.64 TCGA-AG-4021-01 5 140209423 140209423 C T PCDHA6 Missense_Mutation p.R583W 0.64 tolerated_low_confidence(0.05) benign(0.274) TCGA-AG-4021-01 5 140537046 140537046 G A PCDHB17 Silent p.S490S 0.14 TCGA-AG-4021-01 5 140589035 140589035 C A PCDHB12 Missense_Mutation p.P186T 0.71 tolerated_low_confidence(0.16) benign(0.055) TCGA-AG-4021-01 5 140750199 140750199 G A PCDHGB3 Missense_Mutation p.E80K 0.66 tolerated(0.08) benign(0.115) TCGA-AG-4021-01 5 140789654 140789654 G A PCDHGB6 Missense_Mutation p.A629T 0.72 tolerated(0.08) possibly_damaging(0.517) TCGA-AG-4021-01 5 169108831 169108831 A T DOCK2 Missense_Mutation p.H185L 0.72 deleterious(0.01) benign(0.003) TCGA-AG-4021-01 5 31299713 31299713 C T CDH6 Silent p.N262N 0.10 TCGA-AG-4021-01 5 41510718 41510718 C A PLCXD3 5'Flank 0.75 TCGA-AG-4021-01 6 110953280 110953280 C T CDK19 Missense_Mutation p.R200Q 0.31 deleterious(0) probably_damaging(0.955) TCGA-AG-4021-01 6 119232841 119232841 G C MCM9 Missense_Mutation p.T375S 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-AG-4021-01 6 136683586 136683586 A C MAP7 Splice_Site p.X531_splice 0.17 TCGA-AG-4021-01 6 158924195 158924195 C A TULP4 Missense_Mutation p.P1167H 0.27 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-AG-4021-01 6 22569885 22569885 G A HDGFL1 Silent p.A27A 0.48 TCGA-AG-4021-01 6 30136085 30136085 C T TRIM15 Silent p.I162I 0.69 TCGA-AG-4021-01 6 51799039 51799039 C T PKHD1 Missense_Mutation p.R1997Q 0.08 tolerated(0.74) benign(0.037) TCGA-AG-4021-01 6 54804671 54804671 G A FAM83B Nonsense_Mutation p.W301* 0.84 TCGA-AG-4021-01 6 55120127 55120127 G C HCRTR2 Missense_Mutation p.G199A 0.78 tolerated(0.56) benign(0.065) TCGA-AG-4021-01 6 71235084 71235084 G C FAM135A Missense_Mutation p.R766T 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-AG-4021-01 6 93955132 93955132 G T EPHA7 Missense_Mutation p.F922L 0.44 tolerated(0.37) probably_damaging(0.995) TCGA-AG-4021-01 6 96662733 96662733 C A FUT9 3'UTR 0.62 TCGA-AG-4021-01 7 11419259 11419259 C T THSD7A Missense_Mutation p.E1530K 0.41 tolerated(0.06) benign(0.368) TCGA-AG-4021-01 7 123594291 123594291 G T SPAM1 Missense_Mutation p.D223Y 0.50 deleterious(0) probably_damaging(0.998) TCGA-AG-4021-01 7 126410030 126410030 G A GRM8 Silent p.L416L 0.19 TCGA-AG-4021-01 7 128517306 128517306 G A KCP RNA 0.42 TCGA-AG-4021-01 7 128534095 128534095 G A KCP RNA 0.50 TCGA-AG-4021-01 7 135302373 135302373 T C NUP205 Silent p.A1238A 0.57 TCGA-AG-4021-01 7 143881205 143881205 A G CTAGE4 Silent p.E203E 0.14 TCGA-AG-4021-01 7 150696307 150696307 G A NOS3 Missense_Mutation p.R329H 0.39 deleterious(0) possibly_damaging(0.796) TCGA-AG-4021-01 7 20691155 20691155 T A ABCB5 Missense_Mutation p.I482N 0.40 deleterious(0) probably_damaging(0.994) TCGA-AG-4021-01 7 2974234 2974234 G T CARD11 Silent p.I457I 0.23 TCGA-AG-4021-01 7 35006528 35006528 C T DPY19L1 Missense_Mutation p.R284Q 0.28 tolerated(1) benign(0.004) TCGA-AG-4021-01 7 48237865 48237865 T C ABCA13 Silent p.C65C 0.42 TCGA-AG-4021-01 7 4899469 4899469 C T PAPOLB 3'UTR 0.31 TCGA-AG-4021-01 7 88963721 88963721 C T ZNF804B Silent p.C475C 0.35 TCGA-AG-4021-01 8 143614738 143614738 C T BAI1 Missense_Mutation p.R1161C 0.24 deleterious(0) possibly_damaging(0.898) TCGA-AG-4021-01 8 145649364 145649364 C T VPS28 Missense_Mutation p.R203Q 0.24 tolerated_low_confidence(1) benign(0) TCGA-AG-4021-01 8 23709836 23709836 C T STC1 Silent p.L60L 0.08 TCGA-AG-4021-01 8 55371734 55371734 C T SOX17 Missense_Mutation p.R142C 0.18 deleterious(0) probably_damaging(0.982) TCGA-AG-4021-01 8 59059644 59059644 G A FAM110B Silent p.P285P 0.22 TCGA-AG-4021-01 8 72756083 72756083 C T MSC Missense_Mutation p.A111T 0.28 deleterious(0) probably_damaging(1) TCGA-AG-4021-01 8 73480218 73480218 C G KCNB2 Missense_Mutation p.N83K 0.63 tolerated(0.74) benign(0.026) TCGA-AG-4021-01 8 95885623 95885623 C G INTS8 Missense_Mutation p.A852G 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-AG-4021-01 9 125486434 125486434 C T OR1L4 Missense_Mutation p.L56F 0.05 deleterious(0) possibly_damaging(0.703) TCGA-AG-4021-01 9 140175164 140175164 C T TOR4A 3'UTR 0.34 TCGA-AG-4021-01 9 33364869 33364869 G C NFX1 Intron 0.36 TCGA-AG-4021-01 9 34513110 34513110 G T DNAI1 Missense_Mutation p.G497V 0.32 deleterious(0) benign(0.271) TCGA-AG-4021-01 9 4679805 4679805 T C CDC37L1 Missense_Mutation p.L13P 0.11 deleterious_low_confidence(0.01) benign(0.067) TCGA-AG-4021-01 9 79896785 79896785 T C VPS13A Silent p.A969A 0.10 TCGA-AG-4021-01 X 105280586 105280586 T C SERPINA7 Missense_Mutation p.E155G 0.55 tolerated(0.17) possibly_damaging(0.816) TCGA-AG-4021-01 X 11157614 11157614 C G ARHGAP6 Missense_Mutation p.R765T 0.14 deleterious(0.05) benign(0.138) TCGA-AG-4021-01 X 114141563 114141563 T C HTR2C Missense_Mutation p.L321P 0.42 deleterious(0) probably_damaging(0.979) TCGA-AG-4021-01 X 120009255 120009255 C T CT47B1 Silent p.A90A 0.68 TCGA-AG-4021-01 X 135764994 135764994 C G ARHGEF6 Missense_Mutation p.E468Q 0.64 deleterious(0) probably_damaging(0.958) TCGA-AG-4021-01 X 148607675 148607675 A G IDS Intron 0.60 TCGA-AG-4021-01 X 153033781 153033781 G A PLXNB3 Silent p.Q411Q 0.70 TCGA-AG-4021-01 X 18913297 18913297 A T PHKA2 Missense_Mutation p.S1099T 0.38 tolerated(0.07) possibly_damaging(0.662) TCGA-AG-4021-01 X 19587291 19587291 C A SH3KBP1 Missense_Mutation p.K438N 0.49 deleterious(0.01) benign(0.012) TCGA-AG-4021-01 X 23018703 23018704 - T DDX53 Frame_Shift_Ins p.N177Ifs*14 0.21 TCGA-AG-4021-01 X 53438803 53438803 T C SMC1A Missense_Mutation p.T388A 0.64 tolerated(0.83) benign(0.017) TCGA-AG-4021-01 X 67941401 67941401 G T STARD8 Missense_Mutation p.A758S 0.69 tolerated(0.1) benign(0.015) TCGA-AG-4021-01 X 79999707 79999707 G A BRWD3 Missense_Mutation p.R213C 0.70 deleterious(0) probably_damaging(0.969) TCGA-AG-4021-01 X 9866302 9866302 C T SHROOM2 Missense_Mutation p.R955W 0.35 tolerated(0.22) benign(0) TCGA-AG-4022-01 10 100150480 100150480 C T PYROXD2 Silent p.A389A 0.12 TCGA-AG-4022-01 10 128840969 128840969 T C DOCK1 Silent p.F676F 0.32 TCGA-AG-4022-01 10 50015976 50015976 C A WDFY4 Missense_Mutation p.S1604Y 0.25 tolerated(1) benign(0.027) TCGA-AG-4022-01 11 108043081 108043081 G A NPAT Missense_Mutation p.A877V 0.30 tolerated(0.27) benign(0.06) TCGA-AG-4022-01 11 118779352 118779352 G - BCL9L Frame_Shift_Del p.R14Gfs*31 0.21 TCGA-AG-4022-01 11 124440045 124440045 A G OR8A1 Silent p.T27T 0.20 TCGA-AG-4022-01 11 128677099 128677099 C T FLI1 Missense_Mutation p.T249M 0.18 tolerated(0.07) benign(0.276) TCGA-AG-4022-01 11 32456356 32456356 G A WT1 Missense_Mutation p.P179L 0.37 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-AG-4022-01 11 56086146 56086146 C T OR8K3 Missense_Mutation p.L122F 0.27 deleterious_low_confidence(0) benign(0.054) TCGA-AG-4022-01 11 6291982 6291982 G A CCKBR Missense_Mutation p.D254N 0.29 tolerated(0.31) benign(0.017) TCGA-AG-4022-01 11 66063002 66063002 C T TMEM151A Missense_Mutation p.R429C 0.26 tolerated(0.09) possibly_damaging(0.453) TCGA-AG-4022-01 11 6898607 6898607 C T OR10A4 Silent p.S243S 0.34 TCGA-AG-4022-01 11 84028152 84028152 G A DLG2 Intron 0.30 TCGA-AG-4022-01 11 92616217 92616217 G A FAT3 Missense_Mutation p.A4199T 0.17 benign(0.097) TCGA-AG-4022-01 12 104056703 104056703 G T STAB2 Missense_Mutation p.G650V 0.12 deleterious(0) probably_damaging(0.997) TCGA-AG-4022-01 12 124362407 124362407 G A DNAH10 Missense_Mutation p.R2657Q 0.32 probably_damaging(0.999) TCGA-AG-4022-01 12 124416207 124416207 G A DNAH10 Missense_Mutation p.R4196H 0.10 probably_damaging(0.998) TCGA-AG-4022-01 12 22078996 22078996 G A ABCC9 Missense_Mutation p.R96W 0.18 tolerated(0.18) benign(0.005) TCGA-AG-4022-01 12 47629447 47629447 G A PCED1B Missense_Mutation p.A201T 0.26 tolerated(0.13) benign(0.143) TCGA-AG-4022-01 12 52715017 52715017 C T KRT83 Missense_Mutation p.A35T 0.17 tolerated(0.05) benign(0.008) TCGA-AG-4022-01 12 6690701 6690701 G A CHD4 Intron 0.21 TCGA-AG-4022-01 13 103384353 103384353 C A CCDC168 Nonsense_Mutation p.E1603* 0.48 TCGA-AG-4022-01 13 20216402 20216402 G T MPHOSPH8 Missense_Mutation p.D121Y 0.06 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-AG-4022-01 13 24520296 24520296 C T ANKRD20A19P RNA 0.10 TCGA-AG-4022-01 13 43987027 43987027 C A ENOX1 Missense_Mutation p.E8D 0.07 tolerated_low_confidence(0.11) benign(0.217) TCGA-AG-4022-01 13 58207591 58207591 G A PCDH17 Missense_Mutation p.R304H 0.12 deleterious(0.03) possibly_damaging(0.671) TCGA-AG-4022-01 13 84455223 84455223 A G SLITRK1 Silent p.N140N 0.19 TCGA-AG-4022-01 14 23889192 23889192 G A MYH7 Silent p.H1196H 0.29 TCGA-AG-4022-01 14 32615470 32615470 G C ARHGAP5 Silent p.G1289G 0.13 TCGA-AG-4022-01 14 38724873 38724873 C T CLEC14A Missense_Mutation p.D119N 0.35 tolerated(0.07) probably_damaging(0.989) TCGA-AG-4022-01 15 26812850 26812850 C T GABRB3 Missense_Mutation p.R238Q 0.26 tolerated(0.31) benign(0.212) TCGA-AG-4022-01 15 42164017 42164017 C - SPTBN5 Frame_Shift_Del p.G1755Efs*44 0.27 TCGA-AG-4022-01 15 58840582 58840582 G A LIPC Missense_Mutation p.D288N 0.31 deleterious(0) probably_damaging(0.999) TCGA-AG-4022-01 15 69007637 69007637 G A CORO2B Silent p.P318P 0.13 TCGA-AG-4022-01 15 75014785 75014785 G T CYP1A1 Silent p.V218V 0.26 TCGA-AG-4022-01 16 24801675 24801675 G A TNRC6A Missense_Mutation p.G571D 0.25 deleterious(0.01) possibly_damaging(0.743) TCGA-AG-4022-01 16 630955 630955 G A PIGQ Missense_Mutation p.R505Q 0.17 tolerated(0.1) possibly_damaging(0.642) TCGA-AG-4022-01 16 683013 683013 T G WFIKKN1 Silent p.G201G 0.29 TCGA-AG-4022-01 16 83992915 83992915 C T OSGIN1 Missense_Mutation p.P40S 0.54 deleterious(0) probably_damaging(1) TCGA-AG-4022-01 17 27414107 27414107 C A MYO18A Missense_Mutation p.E1853D 0.60 deleterious(0.02) possibly_damaging(0.762) TCGA-AG-4022-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.61 tolerated(0.13) possibly_damaging(0.631) TCGA-AG-4022-01 17 7696105 7696105 G A DNAH2 Missense_Mutation p.A2426T 0.65 possibly_damaging(0.902) TCGA-AG-4022-01 18 55221621 55221621 G A FECH Silent p.D322D 0.43 TCGA-AG-4022-01 18 65181676 65181676 T G DSEL Missense_Mutation p.K67T 0.48 tolerated_low_confidence(0.31) benign(0.203) TCGA-AG-4022-01 18 8085826 8085826 G A PTPRM Missense_Mutation p.G570D 0.32 deleterious(0) probably_damaging(0.997) TCGA-AG-4022-01 19 11833306 11833306 C T ZNF823 Missense_Mutation p.R348Q 0.32 tolerated(0.98) benign(0.017) TCGA-AG-4022-01 19 21909781 21909781 T A ZNF100 Missense_Mutation p.T445S 0.20 tolerated(0.15) benign(0.059) TCGA-AG-4022-01 19 22575076 22575076 G A ZNF98 Missense_Mutation p.P321S 0.33 deleterious(0.02) possibly_damaging(0.853) TCGA-AG-4022-01 19 36210821 36210821 A T KMT2B Missense_Mutation p.Q191L 0.33 unknown(0) TCGA-AG-4022-01 19 36229230 36229230 C T KMT2B Silent p.D2640D 0.25 TCGA-AG-4022-01 19 38590639 38590639 C T SIPA1L3 Missense_Mutation p.T568M 0.38 deleterious(0) benign(0.079) TCGA-AG-4022-01 19 42569945 42569945 C T GRIK5 5'Flank 0.37 TCGA-AG-4022-01 19 56370116 56370116 G A NLRP4 Missense_Mutation p.V453M 0.32 tolerated(0.33) benign(0.004) TCGA-AG-4022-01 1 110560174 110560174 G T AHCYL1 Nonsense_Mutation p.E341* 0.30 TCGA-AG-4022-01 1 115258748 115258748 C A NRAS Missense_Mutation p.G12C 0.63 deleterious(0.04) probably_damaging(0.955) TCGA-AG-4022-01 1 11894602 11894602 G A CLCN6 Missense_Mutation p.R583Q 0.59 tolerated(1) benign(0.232) TCGA-AG-4022-01 1 149902265 149902265 T C MTMR11 Missense_Mutation p.R547G 0.57 tolerated(0.15) benign(0.159) TCGA-AG-4022-01 1 196928081 196928081 G T CFHR2 Missense_Mutation p.K228N 0.16 tolerated(0.05) probably_damaging(0.997) TCGA-AG-4022-01 1 197094320 197094320 G A ASPM Nonsense_Mutation p.R980* 0.56 TCGA-AG-4022-01 1 214564363 214564363 T G PTPN14 Silent p.R319R 0.79 TCGA-AG-4022-01 1 249141394 249141394 A G ZNF672 5'UTR 0.11 TCGA-AG-4022-01 1 76779633 76779633 C G ST6GALNAC3 Nonsense_Mutation p.Y54* 0.59 TCGA-AG-4022-01 20 31627236 31627236 C A BPIFB6 Silent p.G328G 0.10 TCGA-AG-4022-01 20 42876148 42876148 G A GDAP1L1 Silent p.S58S 0.42 TCGA-AG-4022-01 20 43355838 43355838 C T WISP2 Missense_Mutation p.R215W 0.13 deleterious(0) probably_damaging(1) TCGA-AG-4022-01 20 60485514 60485514 G A CDH4 Missense_Mutation p.V409M 0.07 deleterious(0.04) possibly_damaging(0.87) TCGA-AG-4022-01 21 46086603 46086603 G C KRTAP12-2 Silent p.P67P 0.20 TCGA-AG-4022-01 2 179463600 179463600 A G TTN Missense_Mutation p.V18946A 0.33 TCGA-AG-4022-01 2 20196989 20196989 A C MATN3 Silent p.G400G 0.14 TCGA-AG-4022-01 2 209036777 209036777 C T C2orf80 Missense_Mutation p.C130Y 0.26 deleterious(0.02) benign(0) TCGA-AG-4022-01 2 210798545 210798545 G T UNC80 Splice_Site p.X1933_splice 0.22 TCGA-AG-4022-01 2 220416486 220416486 G A OBSL1 Silent p.R1816R 0.16 TCGA-AG-4022-01 2 230723891 230723891 A - TRIP12 Frame_Shift_Del p.G167Vfs*43 0.16 TCGA-AG-4022-01 2 62096668 62096668 C A CCT4 Missense_Mutation p.L504F 0.40 tolerated(0.17) benign(0.008) TCGA-AG-4022-01 3 111697965 111697965 C A ABHD10 Silent p.G19G 0.32 TCGA-AG-4022-01 3 147128733 147128733 C T ZIC1 Silent p.R278R 0.27 TCGA-AG-4022-01 3 166958644 166958644 C A ZBBX Missense_Mutation p.E819D 0.29 tolerated(0.38) benign(0.02) TCGA-AG-4022-01 3 170108144 170108144 C T SKIL Silent p.V521V 0.43 TCGA-AG-4022-01 3 183639066 183639066 A G ABCC5 3'UTR 0.30 TCGA-AG-4022-01 3 196386855 196386855 A G NRROS Missense_Mutation p.D114G 0.29 deleterious(0.01) possibly_damaging(0.673) TCGA-AG-4022-01 3 48627963 48627963 G A COL7A1 Missense_Mutation p.T612M 0.10 unknown(0) TCGA-AG-4022-01 3 48643274 48643274 C T UQCRC1 Missense_Mutation p.D76N 0.30 deleterious(0.03) benign(0.027) TCGA-AG-4022-01 3 52554892 52554892 C T STAB1 Missense_Mutation p.R1927C 0.34 tolerated(0.06) possibly_damaging(0.586) TCGA-AG-4022-01 3 57850278 57850278 G A SLMAP Missense_Mutation p.A324T 0.23 deleterious(0.05) benign(0.023) TCGA-AG-4022-01 4 128651577 128651577 G A SLC25A31 5'UTR 0.19 TCGA-AG-4022-01 4 15689112 15689112 T C FAM200B Missense_Mutation p.I171T 0.08 deleterious(0) probably_damaging(0.944) TCGA-AG-4022-01 5 112170669 112170669 T - APC Frame_Shift_Del p.L589* 0.21 TCGA-AG-4022-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.35 TCGA-AG-4022-01 5 140235715 140235715 G A PCDHA10 Missense_Mutation p.G28S 0.17 tolerated_low_confidence(0.07) benign(0.119) TCGA-AG-4022-01 5 140559261 140559261 G A PCDHB8 Missense_Mutation p.R549H 0.36 deleterious_low_confidence(0.03) benign(0.358) TCGA-AG-4022-01 5 140793605 140793606 - ACCTGA PCDHGA10 In_Frame_Ins p.P289_D290insEP 0.18 TCGA-AG-4022-01 5 177574555 177574555 G A RMND5B Silent p.A294A 0.14 TCGA-AG-4022-01 5 83402535 83402535 G A EDIL3 Missense_Mutation p.R195C 0.38 deleterious(0) probably_damaging(1) TCGA-AG-4022-01 6 100896393 100896393 G A SIM1 Silent p.R235R 0.08 TCGA-AG-4022-01 6 144509081 144509081 G A STX11 3'UTR 0.14 TCGA-AG-4022-01 6 144869960 144869960 A G UTRN Silent p.E2260E 0.36 TCGA-AG-4022-01 6 160230077 160230077 C T PNLDC1 Missense_Mutation p.R213C 0.26 deleterious(0) probably_damaging(0.988) TCGA-AG-4022-01 6 169641980 169641980 G A THBS2 Silent p.G256G 0.16 TCGA-AG-4022-01 6 29635692 29635692 C T MOG Missense_Mutation p.R195W 0.18 deleterious(0.02) probably_damaging(0.982) TCGA-AG-4022-01 6 3225827 3225827 T A TUBB2B Missense_Mutation p.T166S 0.21 tolerated_low_confidence(0.17) benign(0.032) TCGA-AG-4022-01 6 39353422 39353422 G A KIF6 Missense_Mutation p.R613W 0.12 deleterious(0.01) possibly_damaging(0.841) TCGA-AG-4022-01 6 56336009 56336009 T C DST Missense_Mutation p.M4783V 0.23 probably_damaging(0.986) TCGA-AG-4022-01 7 127014953 127014953 T C ZNF800 Missense_Mutation p.Y146C 0.40 deleterious(0.01) probably_damaging(0.994) TCGA-AG-4022-01 7 18624987 18624987 G A HDAC9 Missense_Mutation p.V36M 0.06 tolerated(0.22) benign(0.012) TCGA-AG-4022-01 7 18868783 18868783 G T HDAC9 Splice_Site p.X775_splice 0.11 TCGA-AG-4022-01 7 94293386 94293386 G A PEG10 Missense_Mutation p.R173H 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-AG-4022-01 8 105509880 105509880 G A LRP12 Silent p.R300R 0.18 TCGA-AG-4022-01 8 124266145 124266145 C T ZHX1 Missense_Mutation p.R681Q 0.21 deleterious(0.04) possibly_damaging(0.87) TCGA-AG-4022-01 8 124710796 124710796 G A ANXA13 Silent p.L105L 0.49 TCGA-AG-4022-01 8 143695008 143695008 C T ARC Missense_Mutation p.V209M 0.14 deleterious_low_confidence(0.01) benign(0.429) TCGA-AG-4022-01 8 22548299 22548299 C T EGR3 Missense_Mutation p.R284H 0.28 deleterious(0) probably_damaging(0.973) TCGA-AG-4022-01 9 124751367 124751367 C T TTLL11 Intron 0.43 TCGA-AG-4022-01 9 130495689 130495689 G A TOR2A Missense_Mutation p.R190C 0.29 deleterious(0) probably_damaging(1) TCGA-AG-4022-01 9 139391224 139391224 A G NOTCH1 Missense_Mutation p.Y2323H 0.36 tolerated(0.1) probably_damaging(0.934) TCGA-AG-4022-01 9 5968981 5968981 G A KIAA2026 Missense_Mutation p.P417L 0.11 deleterious(0.01) possibly_damaging(0.718) TCGA-AG-4022-01 X 105451487 105451487 C T MUM1L1 Nonsense_Mutation p.R688* 0.12 TCGA-AG-4022-01 X 128645886 128645886 G T SMARCA1 Missense_Mutation p.H235Q 0.11 deleterious(0) probably_damaging(0.989) TCGA-AG-4022-01 X 129350013 129350013 G A ZNF280C Silent p.C530C 0.22 TCGA-AG-4022-01 X 134166906 134166906 G A FAM127A 3'UTR 0.14 TCGA-AG-4022-01 X 144910616 144910616 T A TMEM257 3'UTR 0.08 TCGA-AG-4022-01 X 30327193 30327193 C T NR0B1 Silent p.A96A 0.29 TCGA-AG-4022-01 X 69673494 69673494 C T DLG3 Missense_Mutation p.R385C 0.26 deleterious(0) probably_damaging(0.999) TCGA-AH-6544-01 10 114910883 114910883 G A TCF7L2 Splice_Site p.X334_splice 0.28 TCGA-AH-6544-01 10 128830403 128830403 C T DOCK1 Silent p.A556A 0.48 TCGA-AH-6544-01 10 135086833 135086833 G T ADAM8 Silent p.T166T 0.40 TCGA-AH-6544-01 10 27306508 27306508 G T ANKRD26 Missense_Mutation p.Q1477K 0.17 tolerated(0.07) possibly_damaging(0.778) TCGA-AH-6544-01 10 27324249 27324249 A C ANKRD26 Missense_Mutation p.L1044V 0.23 tolerated(0.09) possibly_damaging(0.507) TCGA-AH-6544-01 10 42907274 42907274 T C CCNYL2 RNA 0.25 TCGA-AH-6544-01 10 55913044 55913044 C A PCDH15 Missense_Mutation p.V534F 0.42 tolerated(0.07) benign(0.008) TCGA-AH-6544-01 10 76803730 76803730 C T DUPD1 Silent p.T82T 0.18 TCGA-AH-6544-01 10 99625248 99625248 G T CRTAC1 3'UTR 0.31 TCGA-AH-6544-01 11 132527056 132527056 T G OPCML Missense_Mutation p.D109A 0.25 deleterious(0) probably_damaging(1) TCGA-AH-6544-01 11 5322807 5322807 G A OR51B4 Missense_Mutation p.R124C 0.13 tolerated(1) benign(0.004) TCGA-AH-6544-01 11 55418984 55418984 G T OR4S2 Missense_Mutation p.G202V 0.22 deleterious(0) probably_damaging(0.979) TCGA-AH-6544-01 11 65123728 65123728 C T TIGD3 Missense_Mutation p.P150L 0.32 deleterious(0.01) benign(0.004) TCGA-AH-6544-01 11 68318593 68318593 T G PPP6R3 Nonsense_Mutation p.L186* 0.17 TCGA-AH-6544-01 11 6942322 6942322 C G OR2D3 Missense_Mutation p.F30L 0.26 tolerated(1) benign(0.001) TCGA-AH-6544-01 11 73122548 73122548 G A FAM168A Missense_Mutation p.P104L 0.21 tolerated(0.14) probably_damaging(0.96) TCGA-AH-6544-01 12 10862555 10862555 C T YBX3 Silent p.Q244Q 0.24 TCGA-AH-6544-01 12 110290284 110290284 T C GLTP 3'UTR 0.29 TCGA-AH-6544-01 12 129190601 129190601 G A TMEM132C Missense_Mutation p.D1030N 0.50 tolerated(0.08) possibly_damaging(0.459) TCGA-AH-6544-01 12 23687261 23687261 G A SOX5 Silent p.A728A 0.42 TCGA-AH-6544-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.31 deleterious(0) possibly_damaging(0.479) TCGA-AH-6544-01 12 46758307 46758307 A G SLC38A2 Silent p.P246P 0.10 TCGA-AH-6544-01 12 51754530 51754530 C T GALNT6 Missense_Mutation p.G381E 0.28 deleterious(0) probably_damaging(1) TCGA-AH-6544-01 12 64823982 64823982 C G XPOT Missense_Mutation p.L631V 0.21 tolerated(0.1) benign(0.004) TCGA-AH-6544-01 13 101728279 101728279 T G NALCN Missense_Mutation p.Y1300S 0.12 tolerated(0.06) possibly_damaging(0.475) TCGA-AH-6544-01 13 39425975 39425975 T G FREM2 Missense_Mutation p.S2299A 0.19 deleterious(0.02) possibly_damaging(0.905) TCGA-AH-6544-01 13 52952782 52952782 C G THSD1 Silent p.R441R 0.15 TCGA-AH-6544-01 13 80094976 80094976 C T NDFIP2 Missense_Mutation p.S118L 0.21 deleterious(0.03) benign(0.003) TCGA-AH-6544-01 14 55255693 55255693 G A SAMD4A 3'UTR 0.46 TCGA-AH-6544-01 14 70635140 70635140 A G SLC8A3 5'UTR 0.09 TCGA-AH-6544-01 14 96784098 96784098 T G ATG2B Missense_Mutation p.S992R 0.50 deleterious(0.03) possibly_damaging(0.737) TCGA-AH-6544-01 15 35149069 35149069 A G AQR Missense_Mutation p.V1461A 0.19 tolerated_low_confidence(0.76) benign(0) TCGA-AH-6544-01 15 37184403 37184403 C T MEIS2 Missense_Mutation p.G469R 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.88) TCGA-AH-6544-01 15 42837318 42837318 A T LRRC57 Missense_Mutation p.L212H 0.48 deleterious(0) probably_damaging(0.982) TCGA-AH-6544-01 15 57730535 57730535 C A CGNL1 Missense_Mutation p.P113Q 0.26 deleterious(0.03) benign(0.193) TCGA-AH-6544-01 15 66222058 66222058 C T MEGF11 Silent p.P524P 0.44 TCGA-AH-6544-01 15 79382870 79382870 G A RASGRF1 5'UTR 0.56 TCGA-AH-6544-01 16 12571616 12571616 G A SNX29 Missense_Mutation p.R693H 0.18 deleterious(0) possibly_damaging(0.878) TCGA-AH-6544-01 16 15692714 15692714 A G KIAA0430 Missense_Mutation p.S1661P 0.08 tolerated(0.27) benign(0) TCGA-AH-6544-01 16 20486735 20486735 C T ACSM2A Missense_Mutation p.R316W 0.16 deleterious(0) probably_damaging(0.958) TCGA-AH-6544-01 16 23116834 23116834 G - USP31 Frame_Shift_Del p.V340Yfs*27 0.22 TCGA-AH-6544-01 16 28112887 28112887 G A XPO6 Silent p.V1056V 0.30 TCGA-AH-6544-01 16 68849520 68849520 G A CDH1 Missense_Mutation p.V475M 0.16 deleterious(0) probably_damaging(1) TCGA-AH-6544-01 16 71065554 71065555 - A HYDIN Intron 0.20 TCGA-AH-6544-01 17 11145154 11145154 C T SHISA6 Nonsense_Mutation p.Q139* 0.16 TCGA-AH-6544-01 17 1629859 1629859 G A WDR81 Missense_Mutation p.E536K 0.11 tolerated(0.09) probably_damaging(0.912) TCGA-AH-6544-01 17 34855057 34855057 T A ZNHIT3 3'Flank 0.44 TCGA-AH-6544-01 17 38447789 38447789 A T CDC6 Missense_Mutation p.R177W 0.16 deleterious(0) benign(0.325) TCGA-AH-6544-01 17 57944002 57944002 A T TUBD1 Missense_Mutation p.L348H 0.18 deleterious(0) probably_damaging(0.954) TCGA-AH-6544-01 17 69474 69474 C T RPH3AL Missense_Mutation p.D223N 0.33 deleterious(0.03) benign(0.432) TCGA-AH-6544-01 17 71165931 71165931 C T SSTR2 Missense_Mutation p.T158M 0.37 deleterious(0.04) benign(0.029) TCGA-AH-6544-01 17 74287366 74287366 G A QRICH2 Missense_Mutation p.P982S 0.25 tolerated(0.13) benign(0.06) TCGA-AH-6544-01 17 74324917 74324917 C T PRPSAP1 Missense_Mutation p.R221H 0.32 tolerated(0.09) benign(0.139) TCGA-AH-6544-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.41 deleterious(0) probably_damaging(1) TCGA-AH-6544-01 18 43205790 43205790 T C SLC14A2 Missense_Mutation p.L98P 0.29 deleterious(0) possibly_damaging(0.594) TCGA-AH-6544-01 18 56939592 56939592 C A RAX Splice_Site p.X181_splice 0.18 TCGA-AH-6544-01 18 669144 669144 G A TYMS Missense_Mutation p.R176K 0.16 deleterious(0) possibly_damaging(0.769) TCGA-AH-6544-01 18 72592993 72592993 C T ZNF407 Silent p.G1682G 0.45 TCGA-AH-6544-01 19 14024218 14024218 C A CC2D1A Missense_Mutation p.T172K 0.12 deleterious(0) probably_damaging(0.999) TCGA-AH-6544-01 19 19790576 19790576 A G ZNF101 Missense_Mutation p.K260E 0.23 deleterious(0.04) probably_damaging(0.997) TCGA-AH-6544-01 19 3778380 3778380 C T MATK Missense_Mutation p.R443H 0.16 deleterious(0) probably_damaging(0.998) TCGA-AH-6544-01 19 41838164 41838164 C T TGFB1 Missense_Mutation p.V295M 0.19 deleterious(0) probably_damaging(0.998) TCGA-AH-6544-01 19 43244553 43244553 G A PSG3 5'UTR 0.35 TCGA-AH-6544-01 19 50017733 50017733 G A FCGRT Silent p.L197L 0.20 TCGA-AH-6544-01 19 50373291 50373291 G A AKT1S1 Silent p.I238I 0.11 TCGA-AH-6544-01 19 51022391 51022391 C T LRRC4B Silent p.K193K 0.34 TCGA-AH-6544-01 19 56443516 56443516 A G NLRP13 Silent p.R54R 0.33 TCGA-AH-6544-01 19 57134961 57134962 - G ZNF71 3'UTR 0.08 TCGA-AH-6544-01 19 57640913 57640913 G T USP29 Missense_Mutation p.L290F 0.43 deleterious(0.01) probably_damaging(0.996) TCGA-AH-6544-01 19 57839900 57839900 A G ZNF543 Missense_Mutation p.H357R 0.10 deleterious(0) probably_damaging(0.998) TCGA-AH-6544-01 19 6416316 6416316 G A KHSRP Missense_Mutation p.P531S 0.24 tolerated(0.09) possibly_damaging(0.857) TCGA-AH-6544-01 1 104115837 104115837 T G AMY2B Missense_Mutation p.C156W 0.24 deleterious(0) probably_damaging(0.984) TCGA-AH-6544-01 1 104118134 104118134 G A AMY2B Missense_Mutation p.R358H 0.18 tolerated(0.55) benign(0.001) TCGA-AH-6544-01 1 117142715 117142715 T C IGSF3 Missense_Mutation p.N646S 0.27 tolerated(0.28) benign(0.241) TCGA-AH-6544-01 1 152759796 152759796 G A LCE1E Silent p.Q7Q 0.37 TCGA-AH-6544-01 1 155884007 155884007 C A KIAA0907 Missense_Mutation p.A584S 0.38 tolerated_low_confidence(0.37) benign(0.058) TCGA-AH-6544-01 1 156821809 156821809 G T INSRR Missense_Mutation p.S271Y 0.21 deleterious(0.02) possibly_damaging(0.639) TCGA-AH-6544-01 1 158325848 158325848 G A CD1E Missense_Mutation p.R286Q 0.38 tolerated(0.07) probably_damaging(0.919) TCGA-AH-6544-01 1 165677833 165677833 T C RP11-466F5.10 5'Flank 0.33 TCGA-AH-6544-01 1 173157660 173157660 C T TNFSF4 Missense_Mutation p.E68K 0.11 tolerated(0.97) benign(0.001) TCGA-AH-6544-01 1 176905272 176905272 A T ASTN1 Intron 0.38 TCGA-AH-6544-01 1 19499567 19499567 G A UBR4 Silent p.I1104I 0.13 TCGA-AH-6544-01 1 196963367 196963367 T G CFHR5 Silent p.P196P 0.26 TCGA-AH-6544-01 1 200816347 200816347 A G CAMSAP2 Silent p.G373G 0.11 TCGA-AH-6544-01 1 228432236 228432236 G A OBSCN Missense_Mutation p.G1241R 0.16 probably_damaging(0.981) TCGA-AH-6544-01 1 229653796 229653796 C T ABCB10 3'UTR 0.32 TCGA-AH-6544-01 1 237796984 237796984 T C RYR2 Missense_Mutation p.L2221S 0.12 probably_damaging(1) TCGA-AH-6544-01 1 248790102 248790102 A G OR2T11 Missense_Mutation p.F110L 0.11 tolerated(0.2) benign(0.01) TCGA-AH-6544-01 1 31754232 31754232 T C SNRNP40 Missense_Mutation p.N215D 0.11 deleterious(0.01) probably_damaging(0.974) TCGA-AH-6544-01 1 53323088 53323088 C G ZYG11A Silent p.T225T 0.28 TCGA-AH-6544-01 1 78432764 78432764 T C FUBP1 Silent p.E104E 0.15 TCGA-AH-6544-01 1 92643886 92643886 G T KIAA1107 Missense_Mutation p.S382I 0.21 tolerated(0.12) benign(0.026) TCGA-AH-6544-01 20 3838404 3838404 G A MAVS Silent p.E80E 0.18 TCGA-AH-6544-01 20 58482433 58482433 A G SYCP2 Missense_Mutation p.I340T 0.12 tolerated(0.17) benign(0.028) TCGA-AH-6544-01 20 60921205 60921205 C T LAMA5 Missense_Mutation p.R450Q 0.16 possibly_damaging(0.59) TCGA-AH-6544-01 21 43327181 43327181 C T C2CD2 Missense_Mutation p.C413Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-AH-6544-01 22 17119556 17119556 G A TPTEP1 RNA 0.40 TCGA-AH-6544-01 22 29833529 29833529 A G RFPL1 5'Flank 0.21 TCGA-AH-6544-01 22 46658574 46658574 C T PKDREJ Missense_Mutation p.V216I 0.44 tolerated(0.39) benign(0.004) TCGA-AH-6544-01 2 131519855 131519855 G A AMER3 Silent p.A70A 0.29 TCGA-AH-6544-01 2 131520306 131520306 G A AMER3 Missense_Mutation p.E221K 0.37 deleterious(0) probably_damaging(0.982) TCGA-AH-6544-01 2 160901619 160901619 T A PLA2R1 Missense_Mutation p.Q53H 0.19 deleterious(0.03) probably_damaging(0.928) TCGA-AH-6544-01 2 170592587 170592587 A G KLHL23 Missense_Mutation p.M355V 0.13 deleterious(0.02) benign(0.064) TCGA-AH-6544-01 2 179247881 179247881 T C OSBPL6 Silent p.S609S 0.17 TCGA-AH-6544-01 2 187618691 187618691 C T FAM171B Silent p.V309V 0.09 TCGA-AH-6544-01 2 189855038 189855038 C T COL3A1 Silent p.I250I 0.16 TCGA-AH-6544-01 2 197878358 197878358 G A HNRNPA3P15 5'Flank 0.20 TCGA-AH-6544-01 2 210560823 210560823 G A MAP2 Missense_Mutation p.R1310H 0.37 deleterious(0.02) possibly_damaging(0.88) TCGA-AH-6544-01 2 215440510 215440510 C T VWC2L Missense_Mutation p.S212L 0.12 tolerated(0.39) benign(0.001) TCGA-AH-6544-01 2 220037364 220037364 A C CNPPD1 Missense_Mutation p.S393A 0.20 tolerated_low_confidence(0.4) probably_damaging(0.978) TCGA-AH-6544-01 2 226273776 226273776 G T NYAP2 Missense_Mutation p.E60D 0.41 deleterious(0.04) benign(0.419) TCGA-AH-6544-01 2 238249581 238249581 G T COL6A3 Missense_Mutation p.H2660N 0.24 unknown(0) TCGA-AH-6544-01 2 55077334 55077334 C T EML6 Nonsense_Mutation p.R475* 0.41 TCGA-AH-6544-01 2 61713084 61713084 A C XPO1 Missense_Mutation p.F776C 0.11 deleterious(0) probably_damaging(0.999) TCGA-AH-6544-01 2 69049771 69049771 T C ARHGAP25 Silent p.T500T 0.08 TCGA-AH-6544-01 2 70315374 70315374 C A PCBP1 Missense_Mutation p.L167M 0.22 deleterious(0.05) probably_damaging(0.909) TCGA-AH-6544-01 2 71060828 71060828 G A CD207 Missense_Mutation p.R172W 0.25 tolerated(0.06) benign(0.004) TCGA-AH-6544-01 2 80101311 80101311 A G CTNNA2 Missense_Mutation p.D232G 0.20 deleterious(0.03) possibly_damaging(0.653) TCGA-AH-6544-01 2 89309768 89309768 C G IGKV1-9 Missense_Mutation p.R21T 0.21 tolerated(0.08) benign(0.063) TCGA-AH-6544-01 3 10084272 10084272 G T FANCD2 Silent p.S271S 0.48 TCGA-AH-6544-01 3 108276174 108276174 C G KIAA1524 Missense_Mutation p.E701Q 0.07 deleterious(0.02) possibly_damaging(0.835) TCGA-AH-6544-01 3 113804666 113804666 T G QTRTD1 Missense_Mutation p.F400C 0.19 deleterious(0.02) probably_damaging(0.951) TCGA-AH-6544-01 3 129023621 129023621 C A HMCES Silent p.R340R 0.27 TCGA-AH-6544-01 3 148928087 148928087 C T CP Missense_Mutation p.M158I 0.34 tolerated(0.39) benign(0) TCGA-AH-6544-01 3 156763176 156763176 T C LEKR1 Silent p.F572F 0.29 TCGA-AH-6544-01 3 160143874 160143874 C A SMC4 Missense_Mutation p.Q831K 0.06 deleterious(0.04) benign(0.088) TCGA-AH-6544-01 3 167023480 167023480 A T ZBBX Missense_Mutation p.L559Q 0.23 tolerated(0.07) probably_damaging(0.971) TCGA-AH-6544-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.13 deleterious(0.02) probably_damaging(0.959) TCGA-AH-6544-01 3 195509798 195509798 C G MUC4 Missense_Mutation p.D2885H 0.38 probably_damaging(0.975) TCGA-AH-6544-01 4 104511030 104511030 C T TACR3 Missense_Mutation p.V403M 0.16 deleterious(0.02) possibly_damaging(0.496) TCGA-AH-6544-01 4 13604875 13604875 T G BOD1L1 Missense_Mutation p.N1217H 0.17 possibly_damaging(0.847) TCGA-AH-6544-01 4 142053630 142053630 C T RNF150 Silent p.P111P 0.22 TCGA-AH-6544-01 4 146072024 146072024 T G OTUD4 Silent p.P269P 0.18 TCGA-AH-6544-01 4 159603539 159603539 C A ETFDH Missense_Mutation p.A123D 0.14 deleterious(0) possibly_damaging(0.731) TCGA-AH-6544-01 4 16504575 16504575 G A LDB2 Intron 0.40 TCGA-AH-6544-01 4 48069567 48069567 C G TXK 3'UTR 0.18 TCGA-AH-6544-01 4 48096116 48096116 C A TXK Missense_Mutation p.W229C 0.30 tolerated(0.14) possibly_damaging(0.796) TCGA-AH-6544-01 4 73179472 73179472 G T ADAMTS3 Nonsense_Mutation p.S556* 0.13 TCGA-AH-6544-01 4 80929682 80929682 C A ANTXR2 Missense_Mutation p.C345F 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-AH-6544-01 4 85678299 85678299 C T WDFY3 Missense_Mutation p.R1735K 0.14 tolerated(0.61) benign(0.024) TCGA-AH-6544-01 4 89300247 89300247 G A HERC6 Silent p.R58R 0.31 TCGA-AH-6544-01 4 95506021 95506021 T G PDLIM5 Intron 0.17 TCGA-AH-6544-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.22 TCGA-AH-6544-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.29 TCGA-AH-6544-01 5 127503512 127503512 G T SLC12A2 Missense_Mutation p.W892C 0.12 deleterious(0) possibly_damaging(0.882) TCGA-AH-6544-01 5 140175635 140175635 C T PCDHA2 Silent p.N362N 0.32 TCGA-AH-6544-01 5 170343583 170343583 C T RANBP17 Missense_Mutation p.P317S 0.08 tolerated(0.31) probably_damaging(0.99) TCGA-AH-6544-01 5 176289776 176289776 C G UNC5A Missense_Mutation p.F74L 0.15 deleterious(0) benign(0.05) TCGA-AH-6544-01 5 37226749 37226749 C G C5orf42 Missense_Mutation p.D650H 0.12 tolerated(0.3) possibly_damaging(0.73) TCGA-AH-6544-01 5 40835310 40835310 G A RPL37 5'UTR 0.24 TCGA-AH-6544-01 5 63871662 63871662 T A RGS7BP Missense_Mutation p.L132I 0.22 deleterious(0) unknown(0) TCGA-AH-6544-01 5 74325912 74325912 A C GCNT4 5'UTR 0.29 TCGA-AH-6544-01 5 93386521 93386521 T C FAM172A Missense_Mutation p.H75R 0.09 deleterious(0) possibly_damaging(0.858) TCGA-AH-6544-01 6 136878914 136878914 A C MAP3K5 Missense_Mutation p.F1369L 0.41 tolerated(0.07) benign(0.039) TCGA-AH-6544-01 6 146985395 146985395 T C ADGB Missense_Mutation p.L224P 0.17 deleterious(0) probably_damaging(0.999) TCGA-AH-6544-01 6 150063650 150063650 A T NUP43 Missense_Mutation p.S126R 0.47 deleterious_low_confidence(0.01) benign(0.023) TCGA-AH-6544-01 6 161006215 161006215 C A LPA Silent p.G1384G 0.38 TCGA-AH-6544-01 6 26032031 26032031 C G HIST1H3B Missense_Mutation p.Q86H 0.09 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-AH-6544-01 6 26091083 26091083 C G HFE Missense_Mutation p.H31D 0.12 deleterious(0.02) possibly_damaging(0.547) TCGA-AH-6544-01 6 29141602 29141602 C A OR2J2 Missense_Mutation p.L64I 0.18 deleterious(0) probably_damaging(1) TCGA-AH-6544-01 6 29429933 29429933 C G OR2H1 Missense_Mutation p.H129Q 0.19 tolerated(0.09) benign(0.382) TCGA-AH-6544-01 6 33171361 33171361 G T SLC39A7 Missense_Mutation p.G394V 0.27 deleterious(0) probably_damaging(1) TCGA-AH-6544-01 6 36293094 36293094 T C C6orf222 Silent p.G378G 0.14 TCGA-AH-6544-01 6 7232089 7232089 C T RREB1 Missense_Mutation p.R1253W 0.09 deleterious(0.01) probably_damaging(0.919) TCGA-AH-6544-01 7 102952515 102952515 G C PMPCB Missense_Mutation p.E448Q 0.13 tolerated(0.64) benign(0.002) TCGA-AH-6544-01 7 121942355 121942355 T C FEZF1 Missense_Mutation p.N375S 0.17 tolerated(0.68) possibly_damaging(0.898) TCGA-AH-6544-01 7 124387044 124387044 G T GPR37 Silent p.I459I 0.21 TCGA-AH-6544-01 7 128484813 128484813 C T FLNC Silent p.T1098T 0.26 TCGA-AH-6544-01 7 141672786 141672786 C T TAS2R38 Missense_Mutation p.R235H 0.18 tolerated(0.21) benign(0.003) TCGA-AH-6544-01 7 43485148 43485148 G A HECW1 Missense_Mutation p.G793S 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.493) TCGA-AH-6544-01 7 81335745 81335745 T A HGF Splice_Site p.X539_splice 0.10 TCGA-AH-6544-01 8 10470559 10470559 G A RP1L1 Missense_Mutation p.T350M 0.40 possibly_damaging(0.482) TCGA-AH-6544-01 8 106814831 106814831 G A ZFPM2 Missense_Mutation p.E841K 0.12 tolerated(0.19) benign(0.05) TCGA-AH-6544-01 8 12957209 12957209 G A DLC1 Silent p.Y879Y 0.32 TCGA-AH-6544-01 8 20110479 20110479 C T LZTS1 Silent p.S321S 0.32 TCGA-AH-6544-01 8 2092607 2092607 C T MYOM2 Missense_Mutation p.T1367M 0.30 deleterious(0.01) probably_damaging(0.957) TCGA-AH-6544-01 8 48882514 48882514 A C MCM4 Missense_Mutation p.K444T 0.14 deleterious(0.03) benign(0.028) TCGA-AH-6544-01 8 52321746 52321746 T A PXDNL Missense_Mutation p.D813V 0.10 deleterious(0) probably_damaging(1) TCGA-AH-6544-01 8 77617275 77617275 G A ZFHX4 Missense_Mutation p.V318I 0.20 benign(0) TCGA-AH-6544-01 8 86115484 86115484 A T E2F5 Missense_Mutation p.N167I 0.06 deleterious(0.02) possibly_damaging(0.655) TCGA-AH-6544-01 8 88365961 88365961 T G CNBD1 Missense_Mutation p.I417S 0.17 deleterious(0) possibly_damaging(0.9) TCGA-AH-6544-01 9 125282097 125282097 C A OR1J4 Silent p.L226L 0.28 TCGA-AH-6544-01 9 130506979 130506979 G A SH2D3C Missense_Mutation p.P555L 0.26 deleterious(0.04) benign(0.052) TCGA-AH-6544-01 9 135933284 135933284 G A GTF3C5 Missense_Mutation p.E500K 0.16 deleterious(0.05) benign(0.419) TCGA-AH-6544-01 9 36148567 36148567 C T GLIPR2 Missense_Mutation p.T49M 0.52 deleterious(0.02) possibly_damaging(0.591) TCGA-AH-6544-01 9 38398413 38398413 G A ALDH1B1 3'UTR 0.33 TCGA-AH-6544-01 9 82322106 82322106 G A TLE4 Intron 0.06 TCGA-AH-6544-01 9 99581837 99581837 C T ZNF782 Silent p.Q156Q 0.48 TCGA-AH-6544-01 X 110489890 110489890 C G CAPN6 Missense_Mutation p.R614P 0.24 deleterious(0.01) possibly_damaging(0.859) TCGA-AH-6544-01 X 38665259 38665260 TG - MID1IP1 3'UTR 0.20 TCGA-AH-6544-01 X 56591890 56591890 C T UBQLN2 Silent p.T528T 0.68 TCGA-AH-6544-01 X 63411783 63411783 C A AMER1 Nonsense_Mutation p.E462* 0.75 TCGA-AH-6544-01 X 70387356 70387356 G A NLGN3 Missense_Mutation p.R470H 0.71 deleterious(0.01) probably_damaging(1) TCGA-AH-6544-01 X 82764379 82764379 G A POU3F4 Silent p.S349S 0.30 TCGA-AH-6544-01 Y 5605726 5605726 C A PCDH11Y Missense_Mutation p.Q1256K 0.27 deleterious_low_confidence(0) possibly_damaging(0.491) TCGA-AH-6547-01 14 35492257 35492257 A G SRP54 Missense_Mutation p.K433R 0.08 tolerated(0.15) benign(0.002) TCGA-AH-6547-01 1 153653752 153653752 A G NPR1 Missense_Mutation p.T340A 0.08 tolerated(0.22) benign(0.031) TCGA-AH-6547-01 1 167095198 167095198 A G DUSP27 Missense_Mutation p.K277R 0.12 tolerated(0.11) benign(0.16) TCGA-AH-6547-01 1 24078387 24078387 T C TCEB3 Missense_Mutation p.L457P 0.09 tolerated(0.35) benign(0.004) TCGA-AH-6547-01 1 24432557 24432557 T C MYOM3 Missense_Mutation p.K138R 0.27 tolerated(0.19) probably_damaging(0.945) TCGA-AH-6547-01 22 29752433 29752433 T C AP1B1 Missense_Mutation p.D233G 0.10 tolerated(0.06) benign(0.016) TCGA-AH-6547-01 2 197208468 197208468 A G HECW2 Missense_Mutation p.F105L 0.08 deleterious(0.03) benign(0.008) TCGA-AH-6547-01 3 12616402 12616402 T C MKRN2 Missense_Mutation p.S252P 0.08 deleterious(0.04) probably_damaging(0.993) TCGA-AH-6547-01 3 44284371 44284371 G A TOPAZ1 Missense_Mutation p.A125T 0.07 deleterious(0.03) possibly_damaging(0.713) TCGA-AH-6547-01 6 44224197 44224197 A G SLC35B2 Missense_Mutation p.V81A 0.09 tolerated(0.05) benign(0.036) TCGA-AH-6547-01 9 86589497 86589497 T C HNRNPK Missense_Mutation p.S89G 0.15 deleterious(0) benign(0.202) TCGA-AH-6547-01 9 90588850 90588850 T C CDK20 Missense_Mutation p.E59G 0.09 tolerated(0.08) benign(0.139) TCGA-AH-6547-01 X 53591544 53591544 T C HUWE1 Silent p.Q2340Q 0.09 TCGA-AH-6549-01 10 118441351 118441351 G T HSPA12A Silent p.T291T 0.36 TCGA-AH-6549-01 10 128925984 128925984 G T DOCK1 Missense_Mutation p.V914L 0.27 tolerated(0.05) benign(0.002) TCGA-AH-6549-01 10 23731192 23731192 T C OTUD1 3'UTR 0.52 TCGA-AH-6549-01 10 43977218 43977218 G A ZNF487 Missense_Mutation p.G159R 0.56 tolerated(0.9) benign(0.03) TCGA-AH-6549-01 11 103173911 103173911 C A DYNC2H1 Missense_Mutation p.P3736T 0.19 benign(0.343) TCGA-AH-6549-01 11 129735843 129735844 AG - NFRKB Frame_Shift_Del p.S1214Cfs*42 0.23 TCGA-AH-6549-01 11 18735520 18735520 G A IGSF22 Silent p.R658R 0.54 TCGA-AH-6549-01 11 5254215 5254215 G A HBD Silent p.A141A 0.17 TCGA-AH-6549-01 11 5536970 5536970 C A UBQLNL Missense_Mutation p.M234I 0.20 tolerated(0.5) benign(0) TCGA-AH-6549-01 11 62300430 62300430 T C AHNAK Missense_Mutation p.K487E 0.44 probably_damaging(0.998) TCGA-AH-6549-01 11 65793355 65793355 C T CATSPER1 Missense_Mutation p.V166M 0.50 tolerated(0.24) benign(0.003) TCGA-AH-6549-01 11 76507126 76507126 C T TSKU Nonsense_Mutation p.Q156* 0.18 TCGA-AH-6549-01 11 77639588 77639588 G A INTS4 Missense_Mutation p.R391C 0.17 deleterious(0) probably_damaging(0.994) TCGA-AH-6549-01 12 124189172 124189172 T C TCTN2 Missense_Mutation p.L569P 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-AH-6549-01 12 125609353 125609353 C T AACS Intron 0.08 TCGA-AH-6549-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.42 deleterious(0) possibly_damaging(0.479) TCGA-AH-6549-01 12 49075344 49075344 T C KANSL2 Silent p.E24E 0.12 TCGA-AH-6549-01 12 50754549 50754549 C T FAM186A Silent p.K191K 0.22 TCGA-AH-6549-01 12 54367195 54367195 G A HOXC11 Missense_Mutation p.R57H 0.37 deleterious(0.04) probably_damaging(0.991) TCGA-AH-6549-01 12 54576190 54576190 A G SMUG1 Missense_Mutation p.L168P 0.10 deleterious(0.05) probably_damaging(0.992) TCGA-AH-6549-01 12 64660945 64660945 T A C12orf56 3'UTR 0.41 TCGA-AH-6549-01 13 101844369 101844369 C T NALCN Missense_Mutation p.G555R 0.79 deleterious(0) probably_damaging(0.998) TCGA-AH-6549-01 13 20025364 20025364 T A TPTE2 Missense_Mutation p.E248V 0.29 deleterious(0.01) benign(0.423) TCGA-AH-6549-01 13 36229754 36229754 G A NBEA Missense_Mutation p.V2723I 0.61 deleterious(0) probably_damaging(0.951) TCGA-AH-6549-01 13 37269902 37269902 G A SERTM1 3'UTR 0.26 TCGA-AH-6549-01 13 38320504 38320504 T A TRPC4 Missense_Mutation p.E156V 0.18 deleterious(0) probably_damaging(0.922) TCGA-AH-6549-01 13 39454504 39454504 A T FREM2 Missense_Mutation p.R3030S 0.22 deleterious(0) possibly_damaging(0.867) TCGA-AH-6549-01 13 49794957 49794957 C A MLNR Missense_Mutation p.L162I 0.59 tolerated(0.07) probably_damaging(0.997) TCGA-AH-6549-01 14 58604742 58604742 A C C14orf37 Silent p.S445S 0.69 TCGA-AH-6549-01 14 60903654 60903654 G T C14orf39 Nonsense_Mutation p.S558* 0.66 TCGA-AH-6549-01 14 73729497 73729497 C T PAPLN Silent p.A868A 0.68 TCGA-AH-6549-01 15 24928573 24928573 G A NPAP1 3'UTR 0.73 TCGA-AH-6549-01 15 25959334 25959334 G A ATP10A Missense_Mutation p.R611W 0.73 deleterious(0.02) probably_damaging(0.969) TCGA-AH-6549-01 15 34163187 34163187 A G AVEN Silent p.L187L 0.08 TCGA-AH-6549-01 15 70991976 70991977 AT - UACA Frame_Shift_Del p.Y34* 0.43 TCGA-AH-6549-01 16 24104235 24104235 C T PRKCB Missense_Mutation p.S218F 0.22 deleterious(0.01) possibly_damaging(0.459) TCGA-AH-6549-01 16 29884659 29884659 A C SEZ6L2 Missense_Mutation p.F797C 0.77 deleterious(0) probably_damaging(0.992) TCGA-AH-6549-01 16 3614280 3614280 C T NLRC3 Missense_Mutation p.G267S 0.83 deleterious(0) probably_damaging(1) TCGA-AH-6549-01 16 55703507 55703507 T C SLC6A2 Missense_Mutation p.L102P 0.10 deleterious(0) probably_damaging(0.961) TCGA-AH-6549-01 16 67300007 67300007 C T SLC9A5 Silent p.T699T 0.74 TCGA-AH-6549-01 16 88501958 88501958 C T ZNF469 Missense_Mutation p.R2666C 0.84 benign(0.005) TCGA-AH-6549-01 17 26911348 26911348 C G SPAG5 Intron 0.46 TCGA-AH-6549-01 17 26964998 26964998 A G KIAA0100 Missense_Mutation p.S543P 0.10 deleterious(0.02) possibly_damaging(0.702) TCGA-AH-6549-01 17 38818271 38818272 - T KRT222 Frame_Shift_Ins p.M41Nfs*5 0.19 TCGA-AH-6549-01 17 55123617 55123617 C A RNF126P1 RNA 0.38 TCGA-AH-6549-01 17 74005245 74005245 C T EVPL Silent p.A1347A 0.37 TCGA-AH-6549-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.74 deleterious(0) probably_damaging(1) TCGA-AH-6549-01 18 3450394 3450394 C A TGIF1 5'Flank 0.56 TCGA-AH-6549-01 18 59828614 59828614 A G PIGN 5'UTR 0.20 TCGA-AH-6549-01 19 10795374 10795374 T C ILF3 Intron 0.27 TCGA-AH-6549-01 19 14076266 14076266 C A RFX1 Missense_Mutation p.V736L 0.29 tolerated(0.11) benign(0.016) TCGA-AH-6549-01 19 19372262 19372262 G A HAPLN4 Silent p.H38H 0.71 TCGA-AH-6549-01 19 2978266 2978266 C A TLE6 Missense_Mutation p.P12H 0.35 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-AH-6549-01 19 31768401 31768401 C T TSHZ3 Silent p.P766P 0.23 TCGA-AH-6549-01 19 37441552 37441552 G A ZNF568 Silent p.E499E 0.20 TCGA-AH-6549-01 19 38976617 38976617 G A RYR1 Silent p.P1774P 0.27 TCGA-AH-6549-01 19 53571463 53571463 C A ZNF160 Missense_Mutation p.S775I 0.16 tolerated(0.22) possibly_damaging(0.727) TCGA-AH-6549-01 1 10527267 10527267 G T DFFA Missense_Mutation p.L141I 0.27 deleterious(0.01) possibly_damaging(0.803) TCGA-AH-6549-01 1 111146775 111146775 G A KCNA2 Silent p.I210I 0.44 TCGA-AH-6549-01 1 111825955 111825955 G C CHIAP2 RNA 0.26 TCGA-AH-6549-01 1 144598752 144598752 G A RP11-640M9.2 RNA 0.18 TCGA-AH-6549-01 1 152328900 152328900 G T FLG2 Silent p.G454G 0.59 TCGA-AH-6549-01 1 159023463 159023463 G A IFI16 Silent p.P686P 0.16 TCGA-AH-6549-01 1 21031235 21031235 C T KIF17 Silent p.A276A 0.29 TCGA-AH-6549-01 1 229433367 229433367 A G RAB4A Silent p.R143R 0.28 TCGA-AH-6549-01 1 244780890 244780890 C T C1orf101 Silent p.Y850Y 0.18 TCGA-AH-6549-01 1 36894078 36894078 T C OSCP1 Intron 0.17 TCGA-AH-6549-01 1 55472904 55472904 C T BSND Silent p.D169D 0.47 TCGA-AH-6549-01 1 6181181 6181181 C T CHD5 Silent p.P1632P 0.66 TCGA-AH-6549-01 1 71419468 71419468 C A PTGER3 Missense_Mutation p.R361I 0.14 tolerated(0.2) benign(0.001) TCGA-AH-6549-01 1 7839799 7839800 - C VAMP3 3'UTR 0.50 TCGA-AH-6549-01 1 7839801 7839801 T A VAMP3 3'UTR 0.58 TCGA-AH-6549-01 20 32891100 32891100 C T AHCY 5'UTR 0.55 TCGA-AH-6549-01 20 58522393 58522393 C G FAM217B 3'UTR 0.17 TCGA-AH-6549-01 21 34668532 34668532 T C IL10RB Missense_Mutation p.F283S 0.04 tolerated(0.28) benign(0.009) TCGA-AH-6549-01 21 38525373 38525373 C T TTC3 Missense_Mutation p.L846F 0.36 deleterious(0.02) probably_damaging(0.963) TCGA-AH-6549-01 22 19208966 19208966 C A CLTCL1 Missense_Mutation p.E910D 0.77 deleterious(0) possibly_damaging(0.845) TCGA-AH-6549-01 22 37690749 37690749 G A CYTH4 Missense_Mutation p.E51K 0.70 tolerated(0.13) benign(0.033) TCGA-AH-6549-01 2 183053745 183053745 A G PDE1A Missense_Mutation p.C406R 0.31 deleterious(0) probably_damaging(1) TCGA-AH-6549-01 2 1926367 1926367 G A MYT1L Missense_Mutation p.R392W 0.15 deleterious(0) probably_damaging(0.978) TCGA-AH-6549-01 2 29259556 29259556 C G FAM179A Silent p.L856L 0.44 TCGA-AH-6549-01 2 97427829 97427829 G T CNNM4 Missense_Mutation p.A365S 0.33 deleterious(0) probably_damaging(0.998) TCGA-AH-6549-01 3 113187725 113187725 G A SPICE1 Missense_Mutation p.A258V 0.37 tolerated(1) benign(0.034) TCGA-AH-6549-01 3 2942482 2942482 A C CNTN4 Missense_Mutation p.N352H 0.36 deleterious(0.01) possibly_damaging(0.811) TCGA-AH-6549-01 3 46479450 46479450 C T LTF Silent p.L693L 0.48 TCGA-AH-6549-01 3 47129647 47129647 T C SETD2 Missense_Mutation p.I1745V 0.45 tolerated(0.31) probably_damaging(0.977) TCGA-AH-6549-01 3 4821291 4821291 G A ITPR1 Missense_Mutation p.A2102T 0.43 deleterious(0) possibly_damaging(0.545) TCGA-AH-6549-01 3 49051072 49051072 G A WDR6 Missense_Mutation p.R732H 0.50 deleterious(0) probably_damaging(0.995) TCGA-AH-6549-01 3 67053666 67053666 G A KBTBD8 Missense_Mutation p.R92Q 0.29 tolerated(0.37) possibly_damaging(0.898) TCGA-AH-6549-01 3 7721859 7721859 C T GRM7 Missense_Mutation p.R859W 0.34 deleterious(0) probably_damaging(0.993) TCGA-AH-6549-01 4 153245494 153245494 C A FBXW7 Missense_Mutation p.W566L 0.79 deleterious(0) probably_damaging(0.998) TCGA-AH-6549-01 4 158284035 158284035 G A GRIA2 Missense_Mutation p.A831T 0.24 deleterious(0) probably_damaging(0.999) TCGA-AH-6549-01 4 160264556 160264556 G A RAPGEF2 Missense_Mutation p.R924Q 0.76 tolerated(0.09) benign(0.336) TCGA-AH-6549-01 4 183713469 183713469 G A TENM3 Missense_Mutation p.E1882K 0.75 deleterious(0) possibly_damaging(0.651) TCGA-AH-6549-01 4 187629652 187629652 T C FAT1 Missense_Mutation p.K444E 0.29 benign(0.04) TCGA-AH-6549-01 4 189018291 189018291 A T TRIML2 Missense_Mutation p.H173Q 0.22 tolerated(0.27) benign(0.001) TCGA-AH-6549-01 5 112175772 112175772 A - APC Frame_Shift_Del p.S1495Vfs*12 0.40 TCGA-AH-6549-01 5 140256833 140256833 G A PCDHA12 Silent p.A592A 0.82 TCGA-AH-6549-01 5 140794236 140794236 C T PCDHGA10 Silent p.D498D 0.79 TCGA-AH-6549-01 5 180045831 180045831 G A FLT4 Silent p.V980V 0.44 TCGA-AH-6549-01 5 5460921 5460921 G A KIAA0947 Missense_Mutation p.D492N 0.31 tolerated(0.1) benign(0.07) TCGA-AH-6549-01 6 116949295 116949295 T C RSPH4A Silent p.P475P 0.09 TCGA-AH-6549-01 6 116951622 116951622 C G RSPH4A Missense_Mutation p.T608R 0.40 deleterious(0) probably_damaging(0.987) TCGA-AH-6549-01 6 130454635 130454635 C T L3MBTL3 Missense_Mutation p.R669W 0.11 deleterious(0.01) possibly_damaging(0.513) TCGA-AH-6549-01 6 159654160 159654160 C A FNDC1 Missense_Mutation p.S872R 0.18 deleterious_low_confidence(0) unknown(0) TCGA-AH-6549-01 6 27107420 27107420 C G HIST1H4I 3'UTR 0.40 TCGA-AH-6549-01 6 3010339 3010339 C T NQO2 Silent p.L30L 0.29 TCGA-AH-6549-01 6 41533605 41533605 G T FOXP4 Missense_Mutation p.G36V 0.51 tolerated_low_confidence(0.18) benign(0.11) TCGA-AH-6549-01 6 44254085 44254085 C T TCTE1 Missense_Mutation p.M154I 0.54 deleterious(0.01) possibly_damaging(0.481) TCGA-AH-6549-01 7 119914758 119914758 G A KCND2 Silent p.S24S 0.39 TCGA-AH-6549-01 7 128846154 128846154 C T SMO Silent p.L362L 0.23 TCGA-AH-6549-01 7 142481813 142481813 T C PRSS3P2 RNA 0.75 TCGA-AH-6549-01 7 150939044 150939044 G T SMARCD3 Silent p.T232T 0.10 TCGA-AH-6549-01 7 26224622 26224622 C G NFE2L3 Missense_Mutation p.S435C 0.22 tolerated(0.07) benign(0.02) TCGA-AH-6549-01 7 65220804 65220804 C T SNORA22 3'Flank 0.36 TCGA-AH-6549-01 7 94298673 94298673 C T PEG10 3'UTR 0.37 TCGA-AH-6549-01 8 113988189 113988189 C T CSMD3 Missense_Mutation p.D407N 0.45 tolerated_low_confidence(0.39) benign(0) TCGA-AH-6549-01 8 114326938 114326938 C A CSMD3 Missense_Mutation p.G88V 0.29 deleterious(0.02) probably_damaging(0.931) TCGA-AH-6549-01 8 12881557 12881557 T C KIAA1456 3'UTR 0.27 TCGA-AH-6549-01 8 30210406 30210406 G A TUBBP1 RNA 0.17 TCGA-AH-6549-01 8 54141940 54141940 G A OPRK1 Missense_Mutation p.R354W 0.41 deleterious(0.01) benign(0.329) TCGA-AH-6549-01 8 69028025 69028025 C T PREX2 Missense_Mutation p.R1062C 0.22 deleterious_low_confidence(0.01) benign(0.174) TCGA-AH-6549-01 9 37737192 37737192 C G FRMPD1 Missense_Mutation p.L501V 0.40 tolerated(0.87) benign(0.027) TCGA-AH-6549-01 X 142718503 142718503 T C SLITRK4 Missense_Mutation p.N141S 0.84 deleterious(0) probably_damaging(0.992) TCGA-AH-6549-01 X 150840856 150840856 A T PASD1 Nonsense_Mutation p.K547* 0.28 TCGA-AH-6549-01 X 151870494 151870494 G A MAGEA6 3'UTR 0.21 TCGA-AH-6549-01 X 153135086 153135086 G A L1CAM Missense_Mutation p.R386C 0.84 deleterious(0.05) possibly_damaging(0.67) TCGA-AH-6549-01 X 55650368 55650368 A T FOXR2 Missense_Mutation p.E75V 0.74 deleterious(0) probably_damaging(0.973) TCGA-AH-6549-01 X 76937492 76937492 C T ATRX Missense_Mutation p.A1086T 0.85 benign(0) TCGA-AH-6549-01 X 83591853 83591853 C T HDX Missense_Mutation p.A566T 0.17 tolerated(0.61) benign(0) TCGA-AH-6643-01 10 102089792 102089792 G A PKD2L1 Silent p.P23P 0.20 TCGA-AH-6643-01 10 105209516 105209516 G A CALHM2 Silent p.I61I 0.41 TCGA-AH-6643-01 10 127408370 127408370 C G EDRF1 5'UTR 0.21 TCGA-AH-6643-01 10 33502450 33502450 T G NRP1 Missense_Mutation p.K493T 0.23 deleterious(0.01) benign(0.421) TCGA-AH-6643-01 10 49409390 49409390 T G FRMPD2 Missense_Mutation p.K612T 0.13 deleterious(0) probably_damaging(0.932) TCGA-AH-6643-01 10 52005168 52005168 G T ASAH2 Silent p.T58T 0.18 TCGA-AH-6643-01 10 52005169 52005169 G T ASAH2 Missense_Mutation p.T58N 0.18 deleterious_low_confidence(0.04) benign(0.014) TCGA-AH-6643-01 10 71266760 71266760 A G TSPAN15 3'UTR 0.08 TCGA-AH-6643-01 11 111941043 111941043 G A PIH1D2 Intron 0.67 TCGA-AH-6643-01 11 1261118 1261118 G A MUC5B Missense_Mutation p.G1225R 0.92 unknown(0) TCGA-AH-6643-01 11 132527052 132527052 T G OPCML Missense_Mutation p.E110D 0.15 tolerated(0.24) probably_damaging(0.997) TCGA-AH-6643-01 11 33689562 33689562 G A KIAA1549L Silent p.S1804S 0.82 TCGA-AH-6643-01 11 34137367 34137367 T C NAT10 Intron 0.13 TCGA-AH-6643-01 11 4608250 4608250 T G OR52I2 Missense_Mutation p.L70V 0.28 tolerated(0.26) benign(0.02) TCGA-AH-6643-01 11 50003158 50003158 T C OR4C12 Missense_Mutation p.S294G 0.21 deleterious_low_confidence(0) benign(0.001) TCGA-AH-6643-01 11 5537370 5537370 T G UBQLNL Missense_Mutation p.K101T 0.08 deleterious(0) probably_damaging(0.939) TCGA-AH-6643-01 11 58978752 58978752 G A MPEG1 Silent p.G529G 0.26 TCGA-AH-6643-01 11 62595063 62595063 C T STX5 Missense_Mutation p.R89Q 0.23 tolerated(1) benign(0.005) TCGA-AH-6643-01 11 65427176 65427176 G A RELA Missense_Mutation p.R174C 0.79 tolerated(0.06) possibly_damaging(0.561) TCGA-AH-6643-01 11 92565169 92565169 C A FAT3 Missense_Mutation p.P3288H 0.62 possibly_damaging(0.841) TCGA-AH-6643-01 12 100617606 100617606 G A ACTR6 Silent p.E368E 0.54 TCGA-AH-6643-01 12 112578641 112578641 C T TRAFD1 Missense_Mutation p.R86W 0.30 deleterious(0) probably_damaging(0.941) TCGA-AH-6643-01 12 126137028 126137028 G A TMEM132B Silent p.T647T 0.30 TCGA-AH-6643-01 12 132335618 132335618 C T MMP17 Silent p.D537D 0.23 TCGA-AH-6643-01 12 53189685 53189685 C T KRT3 Missense_Mutation p.G48R 0.28 tolerated(0.07) unknown(0) TCGA-AH-6643-01 12 64661055 64661055 T C C12orf56 Missense_Mutation p.M433V 0.10 tolerated(0.51) benign(0.008) TCGA-AH-6643-01 12 7248993 7248993 C A C1RL Missense_Mutation p.K486N 0.34 deleterious(0.03) benign(0.04) TCGA-AH-6643-01 12 80663916 80663916 T G OTOGL Missense_Mutation p.L825V 0.11 tolerated(0.29) benign(0.03) TCGA-AH-6643-01 12 96300225 96300225 G A CCDC38 Silent p.S103S 0.43 TCGA-AH-6643-01 13 103518117 103518117 G C BIVM-ERCC5 Silent p.L1111L 0.53 TCGA-AH-6643-01 13 115090903 115090903 C T CHAMP1 Missense_Mutation p.A529V 0.11 deleterious(0.02) benign(0.079) TCGA-AH-6643-01 13 23930118 23930118 T G SACS Missense_Mutation p.Q211H 0.06 probably_damaging(0.995) TCGA-AH-6643-01 13 26788761 26788761 T A RNF6 Nonsense_Mutation p.R420* 0.19 TCGA-AH-6643-01 13 36878551 36878551 T G SPG20 Missense_Mutation p.K651T 0.08 tolerated_low_confidence(0.1) benign(0.024) TCGA-AH-6643-01 13 58299342 58299342 T A PCDH17 Missense_Mutation p.S1132T 0.09 tolerated_low_confidence(0.27) benign(0.003) TCGA-AH-6643-01 13 60407364 60407364 C A DIAPH3 Silent p.S968S 0.41 TCGA-AH-6643-01 13 86368080 86368080 A C SLITRK6 3'UTR 0.18 TCGA-AH-6643-01 13 95114331 95114331 G A DCT Nonsense_Mutation p.R326* 0.18 TCGA-AH-6643-01 14 101349854 101349854 C T RTL1 Silent p.A424A 0.36 TCGA-AH-6643-01 14 104199401 104199401 A C ZFYVE21 3'UTR 0.61 TCGA-AH-6643-01 14 107013046 107013046 C T IGHV3-49 Silent p.A83A 0.24 TCGA-AH-6643-01 14 24780890 24780890 C T LTB4R2 Silent p.R340R 0.53 TCGA-AH-6643-01 14 29261516 29261516 C T C14orf23 3'UTR 0.44 TCGA-AH-6643-01 14 36988678 36988678 C T NKX2-1 Intron 0.33 TCGA-AH-6643-01 14 99642456 99642456 G A BCL11B Silent p.H239H 0.23 TCGA-AH-6643-01 15 40675519 40675519 G C KNSTRN Silent p.P100P 0.22 TCGA-AH-6643-01 15 42042703 42042703 G C MGA Missense_Mutation p.D2300H 0.24 tolerated(0.07) possibly_damaging(0.671) TCGA-AH-6643-01 15 81625315 81625315 G A TMC3 Silent p.D916D 0.67 TCGA-AH-6643-01 16 10031897 10031897 T G GRIN2A Missense_Mutation p.K309T 0.23 tolerated(0.05) benign(0.018) TCGA-AH-6643-01 16 19184067 19184067 A T SYT17 Intron 0.10 TCGA-AH-6643-01 16 20043451 20043451 G A GPR139 Missense_Mutation p.T223M 0.47 tolerated(0.12) probably_damaging(0.966) TCGA-AH-6643-01 16 2347788 2347788 G A ABCA3 Silent p.I677I 0.18 TCGA-AH-6643-01 16 29675098 29675098 G A SPN Missense_Mutation p.A17T 0.19 tolerated(0.15) benign(0.027) TCGA-AH-6643-01 17 10408265 10408265 C T MYH1 Silent p.K851K 0.73 TCGA-AH-6643-01 17 62009607 62009607 C T CD79B Silent p.A5A 0.35 TCGA-AH-6643-01 17 74288735 74288735 G A QRICH2 Silent p.V525V 0.24 TCGA-AH-6643-01 17 7579361 7579361 A C TP53 Missense_Mutation p.F109C 0.74 deleterious(0) probably_damaging(1) TCGA-AH-6643-01 18 55317593 55317602 TTATACCTTA - ATP8B1 Splice_Site p.X1176_splice 0.48 TCGA-AH-6643-01 19 2413777 2413777 G C TMPRSS9 Missense_Mutation p.G411A 0.17 deleterious(0) probably_damaging(0.988) TCGA-AH-6643-01 19 34934804 34934804 C T UBA2 Missense_Mutation p.P213S 0.49 tolerated(0.05) benign(0.085) TCGA-AH-6643-01 19 42863347 42863347 T G MEGF8 Missense_Mutation p.L1747R 0.16 deleterious(0.01) probably_damaging(0.974) TCGA-AH-6643-01 19 48176864 48176864 C T GLTSCR1 Silent p.D11D 0.22 TCGA-AH-6643-01 19 52130922 52130922 G A SIGLEC5 Missense_Mutation p.P359S 0.60 deleterious(0) probably_damaging(0.996) TCGA-AH-6643-01 19 55222132 55222132 G T AC098784.2 3'Flank 0.56 TCGA-AH-6643-01 19 55913035 55913035 A G UBE2S Silent p.A146A 0.15 TCGA-AH-6643-01 19 57325595 57325595 T G PEG3 Missense_Mutation p.E1405D 0.18 tolerated(0.09) possibly_damaging(0.872) TCGA-AH-6643-01 19 7685874 7685874 C T XAB2 Missense_Mutation p.R610Q 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-AH-6643-01 19 9074564 9074564 G A MUC16 Silent p.S4294S 0.36 TCGA-AH-6643-01 19 9087432 9087432 C A MUC16 Silent p.L1461L 0.24 TCGA-AH-6643-01 1 13475191 13475191 A G PRAMEF18 Missense_Mutation p.L313P 0.12 deleterious(0) probably_damaging(0.999) TCGA-AH-6643-01 1 151789209 151789209 G A RORC Missense_Mutation p.R77C 0.36 deleterious(0) probably_damaging(1) TCGA-AH-6643-01 1 152277299 152277299 C G FLG Missense_Mutation p.V3355L 0.36 unknown(0) TCGA-AH-6643-01 1 153042952 153042952 A T SPRR2B 3'UTR 0.07 TCGA-AH-6643-01 1 156823762 156823762 C T INSRR Missense_Mutation p.R140H 0.57 deleterious(0.01) probably_damaging(1) TCGA-AH-6643-01 1 156876145 156876145 G A PEAR1 Missense_Mutation p.D129N 0.08 tolerated(0.35) benign(0.014) TCGA-AH-6643-01 1 158226761 158226761 G A CD1A Missense_Mutation p.A264T 0.65 deleterious(0.05) probably_damaging(0.999) TCGA-AH-6643-01 1 200342223 200342223 G A LINC00862 Intron 0.15 TCGA-AH-6643-01 1 201983018 201983019 - G ELF3 Frame_Shift_Ins p.E290Gfs*11 0.20 TCGA-AH-6643-01 1 236850015 236850015 C G ACTN2 Nonsense_Mutation p.Y14* 0.20 TCGA-AH-6643-01 1 241920589 241920589 A C WDR64 Missense_Mutation p.K582T 0.07 tolerated(0.34) benign(0.027) TCGA-AH-6643-01 1 59812054 59812054 T G FGGY Missense_Mutation p.L150R 0.17 deleterious(0) probably_damaging(0.997) TCGA-AH-6643-01 1 70477573 70477573 A T LRRC7 Silent p.A328A 0.20 TCGA-AH-6643-01 20 1961100 1961100 G A PDYN Missense_Mutation p.R212W 0.17 deleterious(0) probably_damaging(1) TCGA-AH-6643-01 20 35177484 35177484 C A MYL9 Missense_Mutation p.F117L 0.14 tolerated(0.66) benign(0) TCGA-AH-6643-01 20 40727077 40727077 T C PTPRT Missense_Mutation p.E1277G 0.28 deleterious(0) probably_damaging(0.996) TCGA-AH-6643-01 20 45850063 45850063 G A ZMYND8 Nonsense_Mutation p.Q1061* 0.12 TCGA-AH-6643-01 20 47266542 47266542 G A PREX1 Missense_Mutation p.P1007L 0.10 deleterious(0.01) benign(0.009) TCGA-AH-6643-01 21 10934966 10934966 C G TPTE Missense_Mutation p.R276P 0.16 tolerated(0.93) benign(0.007) TCGA-AH-6643-01 21 28209882 28209882 A C ADAMTS1 3'UTR 0.17 TCGA-AH-6643-01 21 31655095 31655095 T G KRTAP24-1 Missense_Mutation p.Q52H 0.14 deleterious(0.02) probably_damaging(0.934) TCGA-AH-6643-01 21 43281853 43281853 T G PRDM15 Missense_Mutation p.K237T 0.10 tolerated_low_confidence(0.21) benign(0) TCGA-AH-6643-01 22 26114292 26114292 C T ADRBK2 Missense_Mutation p.R579C 0.31 deleterious(0) probably_damaging(0.989) TCGA-AH-6643-01 22 28503861 28503861 C T TTC28 Missense_Mutation p.E658K 0.37 deleterious(0.02) possibly_damaging(0.904) TCGA-AH-6643-01 22 39411748 39411748 C T APOBEC3C Nonsense_Mutation p.R56* 0.45 TCGA-AH-6643-01 22 39621756 39621756 G A PDGFB Missense_Mutation p.T233M 0.64 deleterious(0) benign(0.003) TCGA-AH-6643-01 2 118579562 118579562 T C DDX18 Silent p.S292S 0.11 TCGA-AH-6643-01 2 130877615 130877615 G A POTEF Silent p.I158I 0.23 TCGA-AH-6643-01 2 131976449 131976449 C T POTEE Silent p.I158I 0.35 TCGA-AH-6643-01 2 179170934 179170934 T C OSBPL6 Missense_Mutation p.I8T 0.12 tolerated_low_confidence(1) benign(0.087) TCGA-AH-6643-01 2 179434978 179434978 T G TTN Missense_Mutation p.E25294A 0.08 TCGA-AH-6643-01 2 179623847 179623847 G T TTN Missense_Mutation p.F3389L 0.26 TCGA-AH-6643-01 2 210574917 210574917 A G MAP2 Missense_Mutation p.K1671R 0.11 deleterious(0) probably_damaging(0.93) TCGA-AH-6643-01 2 21229068 21229068 G A APOB Missense_Mutation p.R3558C 0.82 probably_damaging(0.915) TCGA-AH-6643-01 2 25982386 25982386 G A ASXL2 Nonsense_Mutation p.R302* 0.84 TCGA-AH-6643-01 3 121339419 121339419 C T FBXO40 5'UTR 0.28 TCGA-AH-6643-01 3 14768414 14768414 C T C3orf20 Missense_Mutation p.R525C 0.27 tolerated(0.05) possibly_damaging(0.847) TCGA-AH-6643-01 3 155267601 155267601 C T PLCH1 Missense_Mutation p.S434N 0.23 tolerated(0.28) benign(0.119) TCGA-AH-6643-01 3 167245795 167245795 A C WDR49 Missense_Mutation p.L454R 0.11 deleterious(0) possibly_damaging(0.703) TCGA-AH-6643-01 3 436486 436486 T G CHL1 Missense_Mutation p.L1009V 0.08 tolerated(0.19) benign(0.045) TCGA-AH-6643-01 3 64133061 64133061 C T PRICKLE2 Missense_Mutation p.V369I 0.45 tolerated(0.23) benign(0.031) TCGA-AH-6643-01 3 9547828 9547828 G A LHFPL4 Missense_Mutation p.R156W 0.23 deleterious(0) probably_damaging(0.932) TCGA-AH-6643-01 4 22463424 22463424 G A GPR125 Nonsense_Mutation p.R113* 0.32 TCGA-AH-6643-01 4 57220881 57220881 T G AASDH Missense_Mutation p.Q400H 0.12 deleterious(0) probably_damaging(0.995) TCGA-AH-6643-01 4 678565 678565 C T MFSD7 Silent p.P222P 0.22 TCGA-AH-6643-01 4 88537383 88537383 G T DSPP Missense_Mutation p.S1190I 0.11 unknown(0) TCGA-AH-6643-01 4 96051102 96051102 C T BMPR1B Silent p.G255G 0.68 TCGA-AH-6643-01 5 100238555 100238555 T G ST8SIA4 Missense_Mutation p.Q35H 0.06 benign(0) TCGA-AH-6643-01 5 101813555 101813555 T G SLCO6A1 Missense_Mutation p.E209D 0.08 tolerated(0.22) benign(0.01) TCGA-AH-6643-01 5 112151204 112151204 C T APC Nonsense_Mutation p.R283* 0.14 TCGA-AH-6643-01 5 112175507 112175507 C T APC Nonsense_Mutation p.Q1406* 0.67 TCGA-AH-6643-01 5 140229622 140229622 C T PCDHA9 Silent p.S514S 0.88 TCGA-AH-6643-01 5 141059672 141059672 T C ARAP3 Missense_Mutation p.S128G 0.11 tolerated(0.21) benign(0.002) TCGA-AH-6643-01 5 169446021 169446021 T G DOCK2 Missense_Mutation p.L1097R 0.18 deleterious(0) probably_damaging(0.983) TCGA-AH-6643-01 5 178459243 178459243 A T ZNF879 Missense_Mutation p.E98D 0.09 tolerated(0.16) benign(0.049) TCGA-AH-6643-01 5 180218983 180218983 T C MGAT1 Missense_Mutation p.K330R 0.14 benign(0.067) TCGA-AH-6643-01 5 7626421 7626421 C T ADCY2 Missense_Mutation p.R238C 0.16 deleterious(0.01) benign(0.108) TCGA-AH-6643-01 6 100403984 100403984 C T MCHR2 Missense_Mutation p.E14K 0.27 tolerated(0.73) benign(0.003) TCGA-AH-6643-01 6 135521267 135521267 C G MYB Missense_Mutation p.P585R 0.32 deleterious(0) probably_damaging(1) TCGA-AH-6643-01 6 149691206 149691206 G A TAB2 Missense_Mutation p.E25K 0.42 deleterious(0) possibly_damaging(0.738) TCGA-AH-6643-01 6 159652961 159652961 G A FNDC1 Missense_Mutation p.E473K 0.34 tolerated(0.42) unknown(0) TCGA-AH-6643-01 6 159660580 159660580 C T FNDC1 Silent p.D1404D 0.39 TCGA-AH-6643-01 6 27107355 27107355 G A HIST1H4I Missense_Mutation p.A90T 0.59 tolerated(0.06) possibly_damaging(0.639) TCGA-AH-6643-01 6 350772 350772 C A DUSP22 Intron 0.07 TCGA-AH-6643-01 6 656918 656918 G A HUS1B Silent p.G9G 0.27 TCGA-AH-6643-01 6 70048837 70048837 C T BAI3 Missense_Mutation p.T1073M 0.54 tolerated(0.07) probably_damaging(0.998) TCGA-AH-6643-01 6 76072581 76072581 A C FILIP1 Missense_Mutation p.V110G 0.14 tolerated(0.07) benign(0.186) TCGA-AH-6643-01 7 102993196 102993196 A G PSMC2 Intron 0.41 TCGA-AH-6643-01 7 119915600 119915600 G A KCND2 Missense_Mutation p.R305H 0.29 deleterious(0) probably_damaging(1) TCGA-AH-6643-01 7 134134495 134134495 T A AKR1B1 Missense_Mutation p.T136S 0.18 tolerated(0.14) benign(0.307) TCGA-AH-6643-01 7 141490252 141490252 A C TAS2R5 Missense_Mutation p.S31R 0.11 deleterious(0.03) possibly_damaging(0.69) TCGA-AH-6643-01 7 150174281 150174281 C A GIMAP8 Missense_Mutation p.Q471K 0.24 tolerated(0.22) benign(0.042) TCGA-AH-6643-01 7 22986657 22986657 T G FAM126A Intron 0.06 TCGA-AH-6643-01 7 22999942 22999942 A C FAM126A Silent p.T308T 0.10 TCGA-AH-6643-01 7 2962953 2962953 G A CARD11 Missense_Mutation p.S652L 0.40 tolerated(0.11) probably_damaging(0.972) TCGA-AH-6643-01 7 6026616 6026616 A G PMS2 Silent p.L594L 0.17 TCGA-AH-6643-01 7 97920546 97920546 C T BRI3 Silent p.T123T 0.26 TCGA-AH-6643-01 8 10396009 10396009 C A PRSS55 Silent p.V255V 0.46 TCGA-AH-6643-01 8 144351679 144351679 G A GLI4 Missense_Mutation p.G38E 0.40 tolerated(0.69) benign(0.041) TCGA-AH-6643-01 8 145618211 145618211 C T ADCK5 Silent p.T555T 0.41 TCGA-AH-6643-01 8 2964063 2964063 G C CSMD1 Silent p.L2312L 0.14 TCGA-AH-6643-01 8 37823677 37823677 G A ADRB3 Missense_Mutation p.P104L 0.22 tolerated(0.71) probably_damaging(1) TCGA-AH-6643-01 9 133346259 133346259 G A ASS1 Silent p.P178P 0.56 TCGA-AH-6643-01 9 135458121 135458121 G A BARHL1 5'UTR 0.24 TCGA-AH-6643-01 9 98244290 98244290 A G PTCH1 Silent p.I229I 0.18 TCGA-AH-6643-01 X 10106966 10106966 C A WWC3 Missense_Mutation p.A1025D 0.53 deleterious(0) probably_damaging(0.999) TCGA-AH-6643-01 X 128614769 128614769 G C SMARCA1 Missense_Mutation p.P784R 0.39 tolerated(0.37) probably_damaging(0.996) TCGA-AH-6643-01 X 90691421 90691421 C T PABPC5 Missense_Mutation p.A282V 0.14 tolerated(0.06) probably_damaging(0.926) TCGA-AH-6644-01 10 108357185 108357185 C T SORCS1 Silent p.T1063T 0.25 TCGA-AH-6644-01 10 12131172 12131172 G A DHTKD1 Missense_Mutation p.R302H 0.30 deleterious(0) probably_damaging(1) TCGA-AH-6644-01 10 126097154 126097154 G T OAT Silent p.T159T 0.26 TCGA-AH-6644-01 10 5203909 5203909 T A AKR1CL1 Missense_Mutation p.E96D 0.38 tolerated(0.06) benign(0.047) TCGA-AH-6644-01 10 62648827 62648828 - AC RHOBTB1 Frame_Shift_Ins p.F200Cfs*10 0.38 TCGA-AH-6644-01 10 7682790 7682790 C T ITIH5 Missense_Mutation p.E110K 0.46 tolerated(0.08) benign(0.343) TCGA-AH-6644-01 11 106579265 106579265 C T GUCY1A2 Missense_Mutation p.R686H 0.67 tolerated(0.09) benign(0.396) TCGA-AH-6644-01 11 111953315 111953316 - A C11orf57 Frame_Shift_Ins p.Q170Tfs*18 0.19 TCGA-AH-6644-01 11 121023786 121023786 C T TECTA Silent p.Y1434Y 0.28 TCGA-AH-6644-01 11 17552956 17552957 GG - USH1C Frame_Shift_Del p.R80Afs*68 0.18 TCGA-AH-6644-01 11 1857174 1857174 G T SYT8 Missense_Mutation p.C120F 0.33 deleterious(0) benign(0.055) TCGA-AH-6644-01 11 299396 299396 G A IFITM5 Missense_Mutation p.P32L 0.21 tolerated(0.41) benign(0.01) TCGA-AH-6644-01 11 607979 607979 C T PHRF1 Silent p.S840S 0.19 TCGA-AH-6644-01 11 61548455 61548455 C T MYRF Missense_Mutation p.T837M 0.30 deleterious(0) probably_damaging(0.953) TCGA-AH-6644-01 11 65417427 65417427 C T SIPA1 Missense_Mutation p.S918L 0.13 deleterious(0) probably_damaging(0.997) TCGA-AH-6644-01 11 76795984 76795984 C T CAPN5 Missense_Mutation p.R18W 0.39 deleterious(0) probably_damaging(0.941) TCGA-AH-6644-01 11 89891358 89891358 G A NAALAD2 Missense_Mutation p.R281Q 0.19 tolerated(0.18) benign(0) TCGA-AH-6644-01 11 9100992 9100992 G C SCUBE2 Silent p.G107G 0.24 TCGA-AH-6644-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.51 deleterious(0) benign(0.361) TCGA-AH-6644-01 12 82747086 82747086 G A CCDC59 Silent p.F190F 0.52 TCGA-AH-6644-01 12 8667891 8667891 C T CLEC4D Missense_Mutation p.L30F 0.19 tolerated(0.08) benign(0.089) TCGA-AH-6644-01 13 107822844 107822844 G A FAM155A 3'UTR 0.28 TCGA-AH-6644-01 13 25828083 25828083 C T MTMR6 Missense_Mutation p.D389N 0.15 deleterious(0) possibly_damaging(0.721) TCGA-AH-6644-01 13 25905802 25905802 G A NUPL1 Intron 0.38 TCGA-AH-6644-01 13 29233313 29233313 C T POMP 5'UTR 0.27 TCGA-AH-6644-01 13 38320195 38320195 G A TRPC4 Missense_Mutation p.T259M 0.17 deleterious(0) probably_damaging(0.994) TCGA-AH-6644-01 13 43362741 43362741 C T FAM216B Missense_Mutation p.R79W 0.15 deleterious(0) possibly_damaging(0.736) TCGA-AH-6644-01 14 20784386 20784386 C A CCNB1IP1 Missense_Mutation p.Q99H 0.20 deleterious(0) probably_damaging(1) TCGA-AH-6644-01 14 50241377 50241377 C G KLHDC2 Nonsense_Mutation p.S111* 0.40 TCGA-AH-6644-01 15 55919279 55919279 C T PRTG Missense_Mutation p.A952T 0.33 tolerated(0.17) benign(0.002) TCGA-AH-6644-01 15 65703614 65703614 T A IGDCC4 Silent p.L55L 0.45 TCGA-AH-6644-01 15 83495232 83495232 A C WHAMM Missense_Mutation p.H510P 0.15 deleterious(0) probably_damaging(0.999) TCGA-AH-6644-01 16 1291615 1291615 C G TPSAB1 Missense_Mutation p.H138Q 0.29 tolerated(1) benign(0.002) TCGA-AH-6644-01 16 19131631 19131631 T A ITPRIPL2 3'UTR 0.42 TCGA-AH-6644-01 16 19191848 19191848 G A SYT17 Silent p.T106T 0.25 TCGA-AH-6644-01 16 23690582 23690582 A G PLK1 Missense_Mutation p.H110R 0.35 deleterious(0) possibly_damaging(0.874) TCGA-AH-6644-01 16 31072703 31072703 A G ZNF668 Missense_Mutation p.F539L 0.40 tolerated(0.3) benign(0) TCGA-AH-6644-01 16 31131665 31131665 C T KAT8 Missense_Mutation p.R98W 0.39 deleterious(0) probably_damaging(1) TCGA-AH-6644-01 16 4387510 4387510 G A GLIS2 Silent p.P520P 0.12 TCGA-AH-6644-01 16 597984 597984 C T CAPN15 Silent p.P382P 0.56 TCGA-AH-6644-01 17 11459124 11459124 G A SHISA6 Silent p.S340S 0.26 TCGA-AH-6644-01 17 11865409 11865409 A G DNAH9 Missense_Mutation p.T4357A 0.25 probably_damaging(1) TCGA-AH-6644-01 17 27016477 27016477 C T SUPT6H Silent p.A1080A 0.23 TCGA-AH-6644-01 17 37880998 37880998 G T ERBB2 Missense_Mutation p.G776V 0.47 deleterious(0.02) probably_damaging(0.996) TCGA-AH-6644-01 17 39296333 39296333 T C KRTAP4-6 Missense_Mutation p.Q136R 0.19 tolerated(0.46) unknown(0) TCGA-AH-6644-01 17 39580231 39580231 C T KRT37 Intron 0.28 TCGA-AH-6644-01 17 54893249 54893250 - C C17orf67 5'UTR 0.46 TCGA-AH-6644-01 17 72348453 72348453 G A KIF19 Missense_Mutation p.D652N 0.45 tolerated(0.14) benign(0.008) TCGA-AH-6644-01 18 14179528 14179528 C T ANKRD20A5P RNA 0.08 TCGA-AH-6644-01 18 44626677 44626677 C T KATNAL2 Missense_Mutation p.A404V 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-AH-6644-01 18 65178346 65178347 - A DSEL Frame_Shift_Ins p.Y1177Lfs*5 0.23 TCGA-AH-6644-01 19 1242530 1242530 C T ATP5D Missense_Mutation p.H73Y 0.28 deleterious(0) probably_damaging(1) TCGA-AH-6644-01 19 12903863 12903864 - ATTG JUNB 3'UTR 0.25 TCGA-AH-6644-01 19 1483395 1483395 G A PCSK4 Missense_Mutation p.R487C 0.23 deleterious(0.03) possibly_damaging(0.879) TCGA-AH-6644-01 19 15052431 15052431 T C OR7C2 Missense_Mutation p.L44P 0.42 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-AH-6644-01 19 31048152 31048152 G A ZNF536 3'UTR 0.45 TCGA-AH-6644-01 19 39070731 39070731 G A RYR1 Missense_Mutation p.R4825H 0.27 unknown(0) TCGA-AH-6644-01 19 42342224 42342224 C T LYPD4 Missense_Mutation p.R108H 0.23 tolerated(0.43) benign(0.014) TCGA-AH-6644-01 19 46112942 46112942 C T EML2 Silent p.V844V 0.08 TCGA-AH-6644-01 19 50102730 50102730 C T PRR12 Missense_Mutation p.R1294C 0.28 possibly_damaging(0.835) TCGA-AH-6644-01 19 54618051 54618051 A - TFPT Frame_Shift_Del p.F18Sfs*60 0.19 TCGA-AH-6644-01 19 55143564 55143564 C T LILRB1 Silent p.R179R 0.22 TCGA-AH-6644-01 19 55903135 55903135 T C RPL28 3'UTR 0.23 TCGA-AH-6644-01 19 7975914 7975914 G A MAP2K7 Missense_Mutation p.R242H 0.15 deleterious(0) probably_damaging(1) TCGA-AH-6644-01 1 145273405 145273405 C T NOTCH2NL Missense_Mutation p.R87W 0.04 deleterious(0.03) benign(0.041) TCGA-AH-6644-01 1 151254074 151254074 C A RP11-126K1.2 Missense_Mutation p.R21L 0.52 deleterious_low_confidence(0) benign(0.3) TCGA-AH-6644-01 1 152777479 152777479 G T LCE1C 3'UTR 0.32 TCGA-AH-6644-01 1 153905987 153905987 C T DENND4B Missense_Mutation p.R1101Q 0.10 tolerated(0.11) probably_damaging(0.978) TCGA-AH-6644-01 1 155039333 155039333 C A EFNA4 Missense_Mutation p.P81T 0.45 tolerated(0.09) benign(0.089) TCGA-AH-6644-01 1 155450113 155450113 G C ASH1L Missense_Mutation p.P850A 0.29 tolerated_low_confidence(0.12) probably_damaging(0.999) TCGA-AH-6644-01 1 155582339 155582339 G A MSTO1 Missense_Mutation p.S315N 0.11 tolerated(0.34) benign(0) TCGA-AH-6644-01 1 155717840 155717841 - TT GON4L 3'Flank 0.19 TCGA-AH-6644-01 1 161596023 161596023 T A FCGR3B Silent p.T199T 0.43 TCGA-AH-6644-01 1 179886702 179886702 A G TOR1AIP1 Silent p.V360V 0.42 TCGA-AH-6644-01 1 185269215 185269215 G A IVNS1ABP Missense_Mutation p.P473S 0.14 deleterious_low_confidence(0.01) benign(0.073) TCGA-AH-6644-01 1 6228223 6228223 C T CHD5 Missense_Mutation p.R65Q 0.67 deleterious_low_confidence(0.01) benign(0.238) TCGA-AH-6644-01 1 71536630 71536630 C G ZRANB2 Missense_Mutation p.S188T 0.45 deleterious(0.04) possibly_damaging(0.483) TCGA-AH-6644-01 1 9078345 9078345 C T SLC2A7 Missense_Mutation p.V176I 0.39 tolerated(1) benign(0.104) TCGA-AH-6644-01 20 23967473 23967473 C T GGTLC1 Intron 0.26 TCGA-AH-6644-01 20 3127926 3127926 G A FASTKD5 Silent p.N597N 0.28 TCGA-AH-6644-01 20 40827935 40827935 G A PTPRT Silent p.S812S 0.51 TCGA-AH-6644-01 20 47260971 47260971 A T PREX1 Missense_Mutation p.L1193M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-AH-6644-01 20 5095775 5095775 G A PCNA 3'UTR 0.44 TCGA-AH-6644-01 20 57415470 57415470 C T RP4-806M20.3 5'Flank 0.48 TCGA-AH-6644-01 20 61143820 61143820 C T C20orf166 5'Flank 0.56 TCGA-AH-6644-01 20 62200924 62200924 C T HELZ2 Missense_Mutation p.R222Q 0.15 tolerated(0.95) benign(0.002) TCGA-AH-6644-01 20 9459613 9459613 C T PLCB4 Missense_Mutation p.P1181L 0.32 deleterious_low_confidence(0.01) benign(0.083) TCGA-AH-6644-01 21 31045414 31045414 C A GRIK1 Silent p.L205L 0.35 TCGA-AH-6644-01 21 39672394 39672394 C T KCNJ15 3'UTR 0.38 TCGA-AH-6644-01 21 43221699 43221699 C T PRDM15 Missense_Mutation p.V1409M 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-AH-6644-01 22 39262247 39262247 A C CBX6 Silent p.A402A 0.66 TCGA-AH-6644-01 22 51117290 51117290 G A SHANK3 Missense_Mutation p.R181H 0.60 probably_damaging(0.983) TCGA-AH-6644-01 2 116447456 116447456 G A DPP10 Missense_Mutation p.V183I 0.43 tolerated(0.19) benign(0.012) TCGA-AH-6644-01 2 133540046 133540046 T C NCKAP5 Silent p.E1446E 0.21 TCGA-AH-6644-01 2 141460038 141460038 G A LRP1B Silent p.S2036S 0.34 TCGA-AH-6644-01 2 141607702 141607702 G A LRP1B Silent p.N1636N 0.16 TCGA-AH-6644-01 2 152293375 152293375 C T RIF1 Silent p.P410P 0.27 TCGA-AH-6644-01 2 160968619 160968619 T A ITGB6 Missense_Mutation p.K691N 0.08 tolerated(0.06) benign(0.198) TCGA-AH-6644-01 2 163137949 163137950 GA - IFIH1 Frame_Shift_Del p.L471Qfs*32 0.16 TCGA-AH-6644-01 2 179637980 179637980 C A TTN Nonsense_Mutation p.E2571* 0.28 TCGA-AH-6644-01 2 219824770 219824770 G A CDK5R2 Silent p.K76K 0.13 TCGA-AH-6644-01 2 71627287 71627287 A G ZNF638 Missense_Mutation p.N878S 0.22 tolerated(0.43) benign(0.156) TCGA-AH-6644-01 3 100170693 100170693 A G LNP1 Missense_Mutation p.E96G 0.28 tolerated(0.13) benign(0.05) TCGA-AH-6644-01 3 122459920 122459920 C T HSPBAP1 Missense_Mutation p.R289H 0.22 deleterious(0) probably_damaging(0.996) TCGA-AH-6644-01 3 126723977 126723977 C T PLXNA1 Silent p.V596V 0.31 TCGA-AH-6644-01 3 137717695 137717695 G A CLDN18 5'UTR 0.27 TCGA-AH-6644-01 3 148563303 148563303 C T CPB1 Missense_Mutation p.R291C 0.32 deleterious(0) probably_damaging(0.997) TCGA-AH-6644-01 3 15126516 15126516 T A ZFYVE20 Nonsense_Mutation p.K143* 0.08 TCGA-AH-6644-01 3 178936094 178936094 C A PIK3CA Missense_Mutation p.Q546K 0.23 deleterious(0.03) probably_damaging(0.952) TCGA-AH-6644-01 3 186793465 186793465 G A ST6GAL1 Silent p.T365T 0.14 TCGA-AH-6644-01 3 187416183 187416183 C A RTP2 3'UTR 0.19 TCGA-AH-6644-01 4 110635576 110635576 C A PLA2G12A Missense_Mutation p.R176L 0.24 deleterious(0) probably_damaging(0.999) TCGA-AH-6644-01 4 154336011 154336012 - T MND1 3'UTR 0.28 TCGA-AH-6644-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.39 TCGA-AH-6644-01 5 134871539 134871539 C T NEUROG1 5'UTR 0.24 TCGA-AH-6644-01 5 135692763 135692763 G A TRPC7 Missense_Mutation p.R105W 0.40 deleterious(0) probably_damaging(0.999) TCGA-AH-6644-01 5 140202772 140202772 G T PCDHA5 Missense_Mutation p.C471F 0.36 deleterious_low_confidence(0.04) benign(0.1) TCGA-AH-6644-01 5 140250913 140250913 G A PCDHA11 Missense_Mutation p.R742H 0.43 deleterious_low_confidence(0) benign(0.113) TCGA-AH-6644-01 5 140573591 140573591 C T PCDHB10 Missense_Mutation p.S489L 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.628) TCGA-AH-6644-01 5 140725548 140725548 G A PCDHGA3 Missense_Mutation p.G650S 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-AH-6644-01 5 150922759 150922759 G T FAT2 Silent p.V2643V 0.18 TCGA-AH-6644-01 5 15616099 15616099 C A FBXL7 Silent p.G15G 0.37 TCGA-AH-6644-01 5 176696731 176696731 G A NSD1 Missense_Mutation p.R1811Q 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-AH-6644-01 5 26988292 26988292 C T CDH9 Missense_Mutation p.R50H 0.36 deleterious(0) probably_damaging(0.991) TCGA-AH-6644-01 5 55195898 55195898 C A IL31RA Missense_Mutation p.S336Y 0.36 tolerated(0.13) benign(0.094) TCGA-AH-6644-01 5 63621206 63621206 G A RNF180 Missense_Mutation p.R474Q 0.21 deleterious(0.01) benign(0.008) TCGA-AH-6644-01 6 100010783 100010783 C T CCNC Missense_Mutation p.R25H 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-AH-6644-01 6 152527418 152527418 G A SYNE1 Missense_Mutation p.A7635V 0.32 benign(0.061) TCGA-AH-6644-01 6 152674812 152674812 A G SYNE1 Missense_Mutation p.I3665T 0.24 benign(0.094) TCGA-AH-6644-01 6 152712653 152712653 C A SYNE1 Missense_Mutation p.G2588V 0.32 benign(0.097) TCGA-AH-6644-01 6 26452620 26452620 G A BTN3A3 Missense_Mutation p.R579H 0.41 tolerated_low_confidence(0.81) benign(0.001) TCGA-AH-6644-01 6 27860932 27860932 A C HIST1H2AM 5'UTR 0.41 TCGA-AH-6644-01 6 42211092 42211092 G T TRERF1 Missense_Mutation p.S918Y 0.18 deleterious(0) possibly_damaging(0.608) TCGA-AH-6644-01 6 5086787 5086787 C T PPP1R3G Silent p.D356D 0.11 TCGA-AH-6644-01 6 84669609 84669609 C A CYB5R4 3'UTR 0.19 TCGA-AH-6644-01 6 89907830 89907830 C T GABRR1 Missense_Mutation p.V161M 0.33 deleterious(0) probably_damaging(0.988) TCGA-AH-6644-01 6 99286086 99286086 C T POU3F2 3'UTR 0.33 TCGA-AH-6644-01 7 108524300 108524300 G T C7orf66 Missense_Mutation p.L38I 0.16 tolerated_low_confidence(0.26) possibly_damaging(0.801) TCGA-AH-6644-01 7 11632944 11632944 C T THSD7A Missense_Mutation p.C403Y 0.34 deleterious(0) probably_damaging(1) TCGA-AH-6644-01 7 127014720 127014720 A G ZNF800 Missense_Mutation p.S224P 0.06 tolerated(0.12) benign(0.133) TCGA-AH-6644-01 7 142458477 142458477 C A PRSS1 Missense_Mutation p.Q38K 0.09 deleterious(0) probably_damaging(0.999) TCGA-AH-6644-01 7 142479980 142479980 C A PRSS3P2 RNA 0.33 TCGA-AH-6644-01 7 148701158 148701158 C T PDIA4 Missense_Mutation p.G556R 0.60 deleterious(0) probably_damaging(1) TCGA-AH-6644-01 7 21659670 21659670 C A DNAH11 Missense_Mutation p.L1497I 0.27 probably_damaging(0.999) TCGA-AH-6644-01 7 34118695 34118695 C A BMPER Missense_Mutation p.H435Q 0.11 deleterious(0.01) possibly_damaging(0.736) TCGA-AH-6644-01 7 48559814 48559814 G A ABCA13 Missense_Mutation p.V4659M 0.31 probably_damaging(0.919) TCGA-AH-6644-01 8 17554828 17554828 C A MTUS1 Intron 0.54 TCGA-AH-6644-01 8 32505823 32505823 G A NRG1 Intron 0.60 TCGA-AH-6644-01 8 6312726 6312726 C G MCPH1 Missense_Mutation p.L630V 0.39 deleterious(0.03) benign(0.136) TCGA-AH-6644-01 8 65527711 65527711 C T CYP7B1 Missense_Mutation p.R310Q 0.65 tolerated(0.29) benign(0.101) TCGA-AH-6644-01 8 72755872 72755872 G A RP11-383H13.1 Missense_Mutation p.R79H 0.66 unknown(0) TCGA-AH-6644-01 8 87680308 87680308 C T CNGB3 Silent p.K194K 0.11 TCGA-AH-6644-01 8 92982963 92982963 G A RUNX1T1 Missense_Mutation p.R499C 0.12 deleterious(0) probably_damaging(0.985) TCGA-AH-6644-01 9 100136921 100136921 G A CCDC180 Missense_Mutation p.R1610H 0.18 deleterious(0) possibly_damaging(0.715) TCGA-AH-6644-01 9 121930133 121930133 G A BRINP1 Silent p.F505F 0.60 TCGA-AH-6644-01 9 125391391 125391391 G A OR1B1 Missense_Mutation p.R142W 0.19 deleterious(0) possibly_damaging(0.545) TCGA-AH-6644-01 9 133729537 133729537 G A ABL1 Missense_Mutation p.A75T 0.12 deleterious(0.03) benign(0.055) TCGA-AH-6644-01 9 139262114 139262114 C T CARD9 Missense_Mutation p.R415Q 0.12 tolerated(0.15) benign(0.02) TCGA-AH-6644-01 9 139693652 139693667 CAGGACTGGGCTTTGG - CCDC183 Frame_Shift_Del p.Q57Pfs*43 0.53 TCGA-AH-6644-01 9 141069893 141069893 C T TUBBP5 RNA 0.11 TCGA-AH-6644-01 X 107976412 107976412 A T IRS4 Missense_Mutation p.C1055S 0.41 deleterious_low_confidence(0.04) unknown(0) TCGA-AH-6644-01 X 107978810 107978810 C A IRS4 Silent p.R255R 0.52 TCGA-AH-6644-01 X 63412095 63412095 G A AMER1 Nonsense_Mutation p.R358* 0.80 TCGA-AH-6897-01 10 12162812 12162812 G T DHTKD1 Missense_Mutation p.L895F 0.25 tolerated(0.25) possibly_damaging(0.861) TCGA-AH-6897-01 10 1405732 1405732 C T ADARB2 Missense_Mutation p.V190M 0.21 deleterious(0) possibly_damaging(0.864) TCGA-AH-6897-01 10 17113966 17113966 C T CUBN Missense_Mutation p.R769Q 0.33 tolerated(0.06) benign(0.126) TCGA-AH-6897-01 10 73051532 73051532 C T UNC5B Silent p.S546S 0.28 TCGA-AH-6897-01 10 95123725 95123725 G A MYOF Missense_Mutation p.T954M 0.27 deleterious(0) probably_damaging(1) TCGA-AH-6897-01 11 113561045 113561045 G T TMPRSS5 Missense_Mutation p.Q372K 0.17 tolerated(0.87) benign(0.042) TCGA-AH-6897-01 11 118773106 118773106 G - BCL9L Frame_Shift_Del p.P449Lfs*14 0.54 TCGA-AH-6897-01 11 47360201 47360201 G A MYBPC3 Silent p.R726R 0.36 TCGA-AH-6897-01 11 51515442 51515442 G A OR4C46 Missense_Mutation p.G54E 0.50 tolerated_low_confidence(0.08) benign(0.008) TCGA-AH-6897-01 11 5411095 5411095 C A OR51M1 Missense_Mutation p.A156E 0.43 deleterious(0) benign(0.3) TCGA-AH-6897-01 11 5536990 5536990 G T UBQLNL Missense_Mutation p.L228M 0.25 deleterious(0) probably_damaging(0.998) TCGA-AH-6897-01 11 59811021 59811021 G A OOSP2 Silent p.A48A 0.22 TCGA-AH-6897-01 11 67208923 67208923 T C CORO1B Missense_Mutation p.S173G 0.58 tolerated(0.26) benign(0) TCGA-AH-6897-01 11 6790003 6790003 C A OR2AG2 Silent p.L62L 0.43 TCGA-AH-6897-01 11 78443432 78443432 C T TENM4 Missense_Mutation p.V1023I 0.27 tolerated(0.53) benign(0.025) TCGA-AH-6897-01 11 92600060 92600060 G A FAT3 Missense_Mutation p.V3938M 0.12 probably_damaging(0.99) TCGA-AH-6897-01 12 22208464 22208464 T G CMAS Missense_Mutation p.M160R 0.61 deleterious(0.01) benign(0.24) TCGA-AH-6897-01 12 44194238 44194238 C T TWF1 Silent p.K126K 0.24 TCGA-AH-6897-01 12 49993358 49993358 G A FAM186B Missense_Mutation p.R689C 0.37 tolerated(0.09) benign(0.086) TCGA-AH-6897-01 13 23905746 23905746 T A SACS Missense_Mutation p.H4090L 0.22 probably_damaging(0.986) TCGA-AH-6897-01 13 24243003 24243003 A G TNFRSF19 Missense_Mutation p.N338D 0.45 tolerated_low_confidence(0.44) benign(0.002) TCGA-AH-6897-01 13 25285467 25285467 G T ATP12A Missense_Mutation p.W1010L 0.29 deleterious(0.03) probably_damaging(0.917) TCGA-AH-6897-01 13 25486083 25486083 C T CENPJ Splice_Site p.X190_splice 0.27 TCGA-AH-6897-01 13 39261820 39261820 C T FREM2 Silent p.D113D 0.43 TCGA-AH-6897-01 14 105413936 105413936 C T AHNAK2 Missense_Mutation p.V2618I 0.56 benign(0.055) TCGA-AH-6897-01 14 21167850 21167850 C T RNASE4 Missense_Mutation p.T107I 0.38 deleterious(0.01) probably_damaging(0.909) TCGA-AH-6897-01 14 23312494 23312494 C T MMP14 Silent p.H239H 0.19 TCGA-AH-6897-01 14 24546196 24546196 G A CPNE6 Missense_Mutation p.R425Q 0.38 tolerated(1) benign(0.002) TCGA-AH-6897-01 14 50459513 50459513 G A C14orf182 Silent p.D95D 0.59 TCGA-AH-6897-01 14 62536499 62536499 C A SYT16 Missense_Mutation p.H234Q 0.34 tolerated(0.19) benign(0.01) TCGA-AH-6897-01 15 25963457 25963457 C T ATP10A Missense_Mutation p.G485S 0.57 tolerated(0.43) benign(0.019) TCGA-AH-6897-01 15 55838648 55838648 C T PYGO1 Missense_Mutation p.R278Q 0.31 tolerated(0.11) possibly_damaging(0.644) TCGA-AH-6897-01 15 75108833 75108833 C T LMAN1L Silent p.D132D 0.27 TCGA-AH-6897-01 15 75705296 75705297 - G SIN3A Frame_Shift_Ins p.G189Wfs*5 0.19 TCGA-AH-6897-01 15 77087668 77087668 G A SCAPER Missense_Mutation p.A242V 0.65 tolerated(0.53) benign(0.003) TCGA-AH-6897-01 16 1129973 1129973 C T SSTR5 3'UTR 0.32 TCGA-AH-6897-01 16 22255965 22255965 C T EEF2K Silent p.H87H 0.38 TCGA-AH-6897-01 16 2816393 2816393 G A SRRM2 Missense_Mutation p.R1955H 0.24 unknown(0) TCGA-AH-6897-01 16 30980690 30980690 C T SETD1A Silent p.D945D 0.19 TCGA-AH-6897-01 16 83065650 83065650 C T CDH13 Missense_Mutation p.R112C 0.33 tolerated(0.1) possibly_damaging(0.514) TCGA-AH-6897-01 16 84227803 84227803 C T ADAD2 Missense_Mutation p.R204C 0.38 tolerated_low_confidence(0.08) benign(0) TCGA-AH-6897-01 17 20163528 20163528 C T SPECC1 Missense_Mutation p.A954V 0.39 deleterious(0.04) benign(0.405) TCGA-AH-6897-01 17 26942741 26942741 T C KIAA0100 Missense_Mutation p.T2156A 0.12 deleterious(0) probably_damaging(0.972) TCGA-AH-6897-01 17 33507645 33507645 C T UNC45B Silent p.L777L 0.11 TCGA-AH-6897-01 17 35620765 35620765 A T ACACA Missense_Mutation p.F384L 0.33 deleterious(0) probably_damaging(0.981) TCGA-AH-6897-01 17 36482750 36482750 T C GPR179 Missense_Mutation p.I2234M 0.11 tolerated(0.06) benign(0.214) TCGA-AH-6897-01 17 37417794 37417794 G A FBXL20 Silent p.H410H 0.13 TCGA-AH-6897-01 17 4836235 4836235 G A GP1BA Silent p.G112G 0.88 TCGA-AH-6897-01 17 73485372 73485372 C T KIAA0195 Nonsense_Mutation p.R264* 0.58 TCGA-AH-6897-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.87 deleterious(0) probably_damaging(0.997) TCGA-AH-6897-01 17 76521165 76521165 G A DNAH17 Missense_Mutation p.P1260S 0.19 benign(0.011) TCGA-AH-6897-01 17 80763835 80763835 C T TBCD Silent p.T345T 0.15 TCGA-AH-6897-01 17 80879389 80879389 G A TBCD Nonsense_Mutation p.W705* 0.14 TCGA-AH-6897-01 18 28913557 28913557 C T DSG1 Silent p.Y230Y 0.89 TCGA-AH-6897-01 18 50994324 50994324 G A DCC Missense_Mutation p.R1227H 0.88 deleterious(0) probably_damaging(0.999) TCGA-AH-6897-01 18 74154167 74154167 C T ZNF516 Missense_Mutation p.G282S 0.80 deleterious(0) probably_damaging(1) TCGA-AH-6897-01 19 13063857 13063857 C T RAD23A Silent p.D362D 0.27 TCGA-AH-6897-01 19 14266101 14266101 C T LPHN1 Intron 0.30 TCGA-AH-6897-01 19 30936391 30936391 G A ZNF536 Missense_Mutation p.R641H 0.39 deleterious(0) probably_damaging(0.999) TCGA-AH-6897-01 19 38874061 38874061 G A PSMD8 3'UTR 0.32 TCGA-AH-6897-01 19 58198262 58198262 A C ZNF551 Missense_Mutation p.S207R 0.36 tolerated(0.12) benign(0.018) TCGA-AH-6897-01 1 152659875 152659875 A C LCE2B 3'UTR 0.50 TCGA-AH-6897-01 1 166135442 166135442 C T FAM78B Missense_Mutation p.R15H 0.53 deleterious(0.04) probably_damaging(0.994) TCGA-AH-6897-01 1 182026857 182026857 T A ZNF648 Missense_Mutation p.M97L 0.56 tolerated(0.21) benign(0) TCGA-AH-6897-01 1 183881319 183881319 G A RGL1 Missense_Mutation p.V591M 0.26 deleterious(0) probably_damaging(0.994) TCGA-AH-6897-01 1 19582494 19582494 A G MRTO4 Missense_Mutation p.N47S 0.29 deleterious(0) possibly_damaging(0.684) TCGA-AH-6897-01 1 200956321 200956321 G A KIF21B Silent p.P1139P 0.32 TCGA-AH-6897-01 1 20674750 20674750 G A VWA5B1 Missense_Mutation p.R925H 0.30 tolerated(0.08) possibly_damaging(0.661) TCGA-AH-6897-01 1 237868586 237868586 C G RYR2 Missense_Mutation p.L3175V 0.23 benign(0.399) TCGA-AH-6897-01 1 248737417 248737417 G A OR2T34 Silent p.T214T 0.18 TCGA-AH-6897-01 1 32620257 32620257 G A KPNA6 Missense_Mutation p.E25K 0.25 deleterious(0.03) benign(0.014) TCGA-AH-6897-01 1 46500269 46500269 G A MAST2 Missense_Mutation p.G1310S 0.58 tolerated_low_confidence(0.51) benign(0.025) TCGA-AH-6897-01 1 55642086 55642088 CTT - USP24 In_Frame_Del p.R174del 0.49 TCGA-AH-6897-01 1 6649065 6649065 C T ZBTB48 Silent p.D620D 0.29 TCGA-AH-6897-01 1 67358911 67358911 C T WDR78 Splice_Site p.X177_splice 0.41 TCGA-AH-6897-01 20 31022402 31022402 T C ASXL1 Silent p.G629G 0.08 TCGA-AH-6897-01 20 3653235 3653235 C T ADAM33 Silent p.S450S 0.54 TCGA-AH-6897-01 21 35821967 35821967 C T KCNE1 5'UTR 0.37 TCGA-AH-6897-01 21 44448921 44448921 T C PKNOX1 Missense_Mutation p.W346R 0.58 deleterious(0) probably_damaging(0.996) TCGA-AH-6897-01 22 23406106 23406106 C T RTDR1 Silent p.K209K 0.28 TCGA-AH-6897-01 22 50502563 50502563 G A MLC1 Missense_Mutation p.T320M 0.22 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-AH-6897-01 2 103040382 103040382 G A IL18RAP Missense_Mutation p.R61Q 0.20 tolerated(1) benign(0) TCGA-AH-6897-01 2 103121918 103121918 T C SLC9A4 Missense_Mutation p.W396R 0.11 deleterious(0.01) possibly_damaging(0.843) TCGA-AH-6897-01 2 164466368 164466368 C T FIGN Silent p.R658R 0.22 TCGA-AH-6897-01 2 173686691 173686691 G A RAPGEF4 Intron 0.18 TCGA-AH-6897-01 2 182767181 182767181 C T SSFA2 Silent p.F467F 0.25 TCGA-AH-6897-01 2 219411744 219411744 C T USP37 Missense_Mutation p.G167D 0.20 tolerated(0.15) benign(0.185) TCGA-AH-6897-01 2 233721632 233721632 G A GIGYF2 3'UTR 0.35 TCGA-AH-6897-01 2 241697880 241697880 G A KIF1A Missense_Mutation p.R827C 0.82 deleterious(0.01) probably_damaging(0.988) TCGA-AH-6897-01 2 51254863 51254863 C A NRXN1 Missense_Mutation p.W183C 0.23 tolerated(0.35) possibly_damaging(0.887) TCGA-AH-6897-01 2 73519392 73519392 G A EGR4 Silent p.N321N 0.24 TCGA-AH-6897-01 2 86847482 86847482 C T RNF103-CHMP3 Missense_Mutation p.D35N 0.65 tolerated(0.08) possibly_damaging(0.607) TCGA-AH-6897-01 2 88327593 88327593 G A KRCC1 Missense_Mutation p.P164S 0.23 tolerated(0.76) benign(0.017) TCGA-AH-6897-01 2 99767310 99767310 G A C2ORF15 3'UTR 0.70 TCGA-AH-6897-01 3 112998277 112998277 C T BOC Silent p.S665S 0.24 TCGA-AH-6897-01 3 12845090 12845090 G A CAND2 Missense_Mutation p.E58K 0.32 deleterious(0) possibly_damaging(0.488) TCGA-AH-6897-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.58 tolerated(0.06) probably_damaging(0.998) TCGA-AH-6897-01 3 33038719 33038719 C T GLB1 Missense_Mutation p.V618M 0.36 deleterious(0.04) possibly_damaging(0.624) TCGA-AH-6897-01 3 38592064 38592064 G T SCN5A Silent p.G1933G 0.54 TCGA-AH-6897-01 3 405112 405112 C A CHL1 Intron 0.30 TCGA-AH-6897-01 3 74383997 74383997 C A CNTN3 Missense_Mutation p.L519F 0.27 deleterious(0) probably_damaging(0.989) TCGA-AH-6897-01 3 9719713 9719713 T C MTMR14 Missense_Mutation p.S290P 0.09 tolerated(0.24) benign(0.002) TCGA-AH-6897-01 4 114824677 114824677 C T ARSJ Missense_Mutation p.E185K 0.27 deleterious(0.04) benign(0.223) TCGA-AH-6897-01 4 126336290 126336290 T A FAT4 Missense_Mutation p.Y2058N 0.42 probably_damaging(0.944) TCGA-AH-6897-01 4 138452072 138452072 G A PCDH18 Silent p.L391L 0.56 TCGA-AH-6897-01 4 153251907 153251907 G A FBXW7 Nonsense_Mutation p.R367* 0.93 TCGA-AH-6897-01 4 16188490 16188490 T C TAPT1 Missense_Mutation p.I254V 0.27 tolerated(0.24) benign(0.163) TCGA-AH-6897-01 4 5461856 5461856 C T STK32B Silent p.R270R 0.19 TCGA-AH-6897-01 5 112155011 112155011 G T APC Nonsense_Mutation p.E428* 0.55 TCGA-AH-6897-01 5 112174835 112174835 A T APC Nonsense_Mutation p.K1182* 0.30 TCGA-AH-6897-01 5 137893098 137893098 C T HSPA9 Missense_Mutation p.R574Q 0.34 tolerated_low_confidence(0.19) benign(0.026) TCGA-AH-6897-01 5 140182543 140182543 G A PCDHA3 Silent p.A587A 0.33 TCGA-AH-6897-01 5 176859755 176859755 A G GRK6 Missense_Mutation p.T130A 0.33 tolerated(0.43) benign(0) TCGA-AH-6897-01 5 32738980 32738980 A C NPR3 Silent p.S301S 0.27 TCGA-AH-6897-01 5 63621078 63621078 C A RNF180 Silent p.I431I 0.28 TCGA-AH-6897-01 5 71524036 71524036 A G MRPS27 Intron 0.09 TCGA-AH-6897-01 5 72348212 72348212 G A FCHO2 Missense_Mutation p.E351K 0.61 deleterious(0.01) benign(0.137) TCGA-AH-6897-01 5 73048835 73048835 A T ARHGEF28 Missense_Mutation p.M95L 0.31 tolerated(0.71) benign(0.002) TCGA-AH-6897-01 5 80419509 80419509 C T RASGRF2 Missense_Mutation p.P840L 0.23 tolerated_low_confidence(0.18) benign(0.01) TCGA-AH-6897-01 6 102337609 102337609 T C GRIK2 Missense_Mutation p.I540T 0.30 deleterious(0) probably_damaging(1) TCGA-AH-6897-01 6 102337653 102337653 T C GRIK2 Missense_Mutation p.F555L 0.27 deleterious(0.01) benign(0.241) TCGA-AH-6897-01 6 10887345 10887345 C T SYCP2L 5'UTR 0.28 TCGA-AH-6897-01 6 108883024 108883024 G A FOXO3 Missense_Mutation p.G205S 0.22 deleterious(0) probably_damaging(0.997) TCGA-AH-6897-01 6 151674847 151674847 C T AKAP12 Missense_Mutation p.S1774F 0.61 deleterious(0.04) benign(0.109) TCGA-AH-6897-01 6 28542795 28542795 C A SCAND3 Missense_Mutation p.A563S 0.24 tolerated_low_confidence(0.24) benign(0.034) TCGA-AH-6897-01 6 31827927 31827927 G A NEU1 Missense_Mutation p.R305C 0.29 deleterious(0) possibly_damaging(0.892) TCGA-AH-6897-01 6 32151763 32151763 C T AGER Silent p.G18G 0.30 TCGA-AH-6897-01 6 38705701 38705701 C T DNAH8 Missense_Mutation p.H140Y 0.58 benign(0.002) TCGA-AH-6897-01 6 41658467 41658467 G A TFEB Silent p.S134S 0.27 TCGA-AH-6897-01 6 50791496 50791496 C T TFAP2B Missense_Mutation p.S153L 0.71 tolerated(0.14) benign(0.02) TCGA-AH-6897-01 6 52343856 52343857 AA - EFHC1 Frame_Shift_Del p.K434Rfs*19 0.26 TCGA-AH-6897-01 6 72947571 72947571 A T RIMS1 Missense_Mutation p.I635F 0.25 deleterious(0) probably_damaging(0.999) TCGA-AH-6897-01 6 73905064 73905064 G A KCNQ5 Missense_Mutation p.R928Q 0.28 tolerated_low_confidence(0.36) benign(0.011) TCGA-AH-6897-01 7 102113001 102113001 G A LRWD1 Silent p.A545A 0.53 TCGA-AH-6897-01 7 138266451 138266451 C T TRIM24 Missense_Mutation p.R910C 0.50 deleterious(0.04) probably_damaging(1) TCGA-AH-6897-01 7 138269562 138269563 - A TRIM24 Frame_Shift_Ins p.R1009Kfs*10 0.32 TCGA-AH-6897-01 7 2956957 2956957 C T CARD11 Silent p.S890S 0.58 TCGA-AH-6897-01 7 38433622 38433622 C T AMPH Missense_Mutation p.E531K 0.39 tolerated(0.18) benign(0.006) TCGA-AH-6897-01 7 43546844 43546844 C T HECW1 Missense_Mutation p.P1247L 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-AH-6897-01 7 47408659 47408659 G A TNS3 Silent p.N528N 0.56 TCGA-AH-6897-01 7 75140395 75140395 C T Y_RNA 3'Flank 0.34 TCGA-AH-6897-01 7 83036508 83036508 C A SEMA3E Missense_Mutation p.D240Y 0.44 deleterious(0) probably_damaging(0.926) TCGA-AH-6897-01 8 113246612 113246612 A G CSMD3 Silent p.N3574N 0.30 TCGA-AH-6897-01 8 57025641 57025641 C T MOS Missense_Mutation p.A301T 0.45 tolerated(0.41) benign(0.019) TCGA-AH-6897-01 8 69069658 69069658 A G PREX2 Missense_Mutation p.N1445D 0.29 deleterious(0.04) benign(0.003) TCGA-AH-6897-01 9 127284965 127284965 G C NR6A1 3'UTR 0.53 TCGA-AH-6897-01 9 139360884 139360884 G A SEC16A Silent p.Y1320Y 0.28 TCGA-AH-6897-01 9 14672827 14672827 C A ZDHHC21 Splice_Site p.X85_splice 0.35 TCGA-AH-6897-01 9 8500788 8500788 C T PTPRD Silent p.E698E 0.27 TCGA-AH-6903-01 10 16883029 16883029 A G CUBN Silent p.S3227S 0.24 TCGA-AH-6903-01 11 101375434 101375434 C A TRPC6 Missense_Mutation p.S89I 0.33 deleterious(0.02) benign(0.432) TCGA-AH-6903-01 11 1084346 1084346 C T MUC2 Silent p.N826N 0.14 TCGA-AH-6903-01 11 123489920 123489920 G A GRAMD1B Missense_Mutation p.M705I 0.35 tolerated(0.27) benign(0.001) TCGA-AH-6903-01 11 20529942 20529942 A C PRMT3 Missense_Mutation p.T527P 0.36 possibly_damaging(0.889) TCGA-AH-6903-01 11 4790635 4790635 A T OR51F1 Nonsense_Mutation p.C171* 0.22 TCGA-AH-6903-01 11 51411721 51411721 G C OR4A5 Nonsense_Mutation p.Y225* 0.23 TCGA-AH-6903-01 11 70821013 70821013 G A SHANK2 Missense_Mutation p.P189L 0.25 deleterious(0) probably_damaging(1) TCGA-AH-6903-01 11 78380498 78380498 G A TENM4 Missense_Mutation p.R2298W 0.23 deleterious(0) probably_damaging(1) TCGA-AH-6903-01 11 85397281 85397281 T C CCDC89 5'UTR 0.10 TCGA-AH-6903-01 12 121177142 121177142 C T ACADS Missense_Mutation p.P377L 0.14 deleterious(0) probably_damaging(1) TCGA-AH-6903-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.27 deleterious(0.02) possibly_damaging(0.773) TCGA-AH-6903-01 12 27533202 27533202 A G ARNTL2 Missense_Mutation p.K117E 0.10 deleterious(0) probably_damaging(0.999) TCGA-AH-6903-01 12 45417627 45417627 G A DBX2 Missense_Mutation p.R184W 0.28 deleterious(0) probably_damaging(0.975) TCGA-AH-6903-01 12 57864133 57864133 T C GLI1 Missense_Mutation p.V537A 0.10 tolerated(0.63) benign(0.001) TCGA-AH-6903-01 12 76424768 76424769 - GT PHLDA1 Frame_Shift_Ins p.F252Tfs*5 0.13 TCGA-AH-6903-01 13 108183521 108183521 C T FAM155A Intron 0.38 TCGA-AH-6903-01 13 114286037 114286037 G A TFDP1 Missense_Mutation p.D96N 0.37 tolerated(0.16) benign(0.006) TCGA-AH-6903-01 13 32972852 32972852 C T BRCA2 Missense_Mutation p.T3401M 0.31 deleterious(0.05) possibly_damaging(0.681) TCGA-AH-6903-01 14 24883915 24883915 C T NYNRIN Missense_Mutation p.P987L 0.10 deleterious_low_confidence(0.01) benign(0.036) TCGA-AH-6903-01 15 57213227 57213227 T C TCF12 Missense_Mutation p.F27L 0.10 deleterious(0) possibly_damaging(0.591) TCGA-AH-6903-01 15 94899261 94899261 A T MCTP2 Intron 0.22 TCGA-AH-6903-01 16 18812654 18812654 G A ARL6IP1 Intron 0.39 TCGA-AH-6903-01 16 29825077 29825077 G A PRRT2 Silent p.G234G 0.14 TCGA-AH-6903-01 16 67200284 67200284 C T HSF4 Missense_Mutation p.R183W 0.22 deleterious(0) possibly_damaging(0.582) TCGA-AH-6903-01 17 30815536 30815536 C A CDK5R1 Silent p.R300R 0.28 TCGA-AH-6903-01 17 39777243 39777243 A T KRT17 Missense_Mutation p.I312K 0.30 deleterious(0) probably_damaging(0.952) TCGA-AH-6903-01 17 7979583 7979583 A G ALOX12B Missense_Mutation p.L481P 0.08 deleterious(0.02) benign(0.016) TCGA-AH-6903-01 17 8021443 8021443 G T ALOXE3 Missense_Mutation p.P88T 0.27 tolerated_low_confidence(0.09) benign(0) TCGA-AH-6903-01 18 34273239 34273239 C T FHOD3 Missense_Mutation p.R522W 0.27 deleterious_low_confidence(0.02) possibly_damaging(0.685) TCGA-AH-6903-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.58 deleterious(0) probably_damaging(1) TCGA-AH-6903-01 19 17450047 17450047 G A GTPBP3 Silent p.A292A 0.52 TCGA-AH-6903-01 19 2291315 2291315 C A LINGO3 Missense_Mutation p.R154L 0.32 tolerated(0.68) benign(0.134) TCGA-AH-6903-01 19 58319779 58319779 C G ZNF552 Missense_Mutation p.V285L 0.24 tolerated(0.72) benign(0.154) TCGA-AH-6903-01 1 120927301 120927301 T G FCGR1B Missense_Mutation p.K227Q 0.25 tolerated(0.21) possibly_damaging(0.715) TCGA-AH-6903-01 1 142805268 142805268 G C RP11-423O2.5 RNA 0.44 TCGA-AH-6903-01 1 152280953 152280953 T G FLG Missense_Mutation p.T2137P 0.09 possibly_damaging(0.507) TCGA-AH-6903-01 1 184663052 184663052 C T EDEM3 3'UTR 0.16 TCGA-AH-6903-01 1 209811946 209811946 G A LAMB3 Silent p.Y77Y 0.27 TCGA-AH-6903-01 1 21903983 21903983 G A ALPL Missense_Mutation p.G473S 0.22 deleterious(0) probably_damaging(1) TCGA-AH-6903-01 1 228003435 228003435 C T PRSS38 Silent p.S6S 0.34 TCGA-AH-6903-01 1 32193673 32193673 G A BAI2 Missense_Mutation p.R1509W 0.25 deleterious(0) benign(0.001) TCGA-AH-6903-01 20 31673879 31673879 C T BPIFB4 Missense_Mutation p.R279W 0.10 deleterious(0.01) possibly_damaging(0.766) TCGA-AH-6903-01 20 31996397 31996397 G T SNTA1 Missense_Mutation p.D478E 0.17 deleterious(0.05) possibly_damaging(0.5) TCGA-AH-6903-01 20 60910152 60910152 C T LAMA5 Missense_Mutation p.V803M 0.17 probably_damaging(0.993) TCGA-AH-6903-01 21 31988919 31988919 G T KRTAP20-1 Missense_Mutation p.R49I 0.23 unknown(0) TCGA-AH-6903-01 21 46086199 46086199 G A KRTAP12-2 3'UTR 0.45 TCGA-AH-6903-01 22 18029065 18029065 A T CECR2 Missense_Mutation p.Y1342F 0.26 deleterious(0.02) benign(0.134) TCGA-AH-6903-01 22 24085928 24085928 G A ZNF70 3'UTR 0.40 TCGA-AH-6903-01 22 40815358 40815358 G A MKL1 Nonsense_Mutation p.R362* 0.26 TCGA-AH-6903-01 2 10925096 10925096 G T PDIA6 Silent p.I406I 0.41 TCGA-AH-6903-01 2 136873550 136873550 T A CXCR4 5'UTR 0.41 TCGA-AH-6903-01 2 160136297 160136297 G A WDSUB1 Silent p.C186C 0.32 TCGA-AH-6903-01 2 167056258 167056258 G A SCN9A Missense_Mutation p.R1620C 0.28 deleterious(0) probably_damaging(0.997) TCGA-AH-6903-01 2 179736219 179736219 C T CCDC141 Missense_Mutation p.G714R 0.31 deleterious(0) probably_damaging(0.996) TCGA-AH-6903-01 2 202902203 202902203 A T FZD7 3'UTR 0.23 TCGA-AH-6903-01 2 219029646 219029646 C T CXCR1 Missense_Mutation p.A97T 0.37 tolerated(0.38) benign(0.037) TCGA-AH-6903-01 2 223559242 223559242 G A MOGAT1 Missense_Mutation p.A214T 0.31 deleterious(0) probably_damaging(0.996) TCGA-AH-6903-01 2 39477829 39477829 C T MAP4K3 Missense_Mutation p.S872N 0.26 deleterious(0) probably_damaging(0.985) TCGA-AH-6903-01 2 56599612 56599612 C T CCDC85A Missense_Mutation p.P484L 0.33 deleterious_low_confidence(0) probably_damaging(0.913) TCGA-AH-6903-01 2 75720710 75720710 G A EVA1A Silent p.Y37Y 0.59 TCGA-AH-6903-01 3 11060297 11060297 G A SLC6A1 Silent p.A128A 0.31 TCGA-AH-6903-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.23 tolerated(0.36) benign(0.4) TCGA-AH-6903-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.23 tolerated(0.11) possibly_damaging(0.529) TCGA-AH-6903-01 3 183823613 183823613 C A HTR3E Missense_Mutation p.L287M 0.30 deleterious(0) probably_damaging(1) TCGA-AH-6903-01 3 46063021 46063021 A G XCR1 Missense_Mutation p.V140A 0.35 tolerated(0.53) benign(0.006) TCGA-AH-6903-01 3 89259518 89259518 A T EPHA3 Missense_Mutation p.Q221L 0.24 deleterious(0.01) benign(0.074) TCGA-AH-6903-01 3 89259519 89259519 G T EPHA3 Missense_Mutation p.Q221H 0.25 tolerated(0.07) benign(0.003) TCGA-AH-6903-01 3 9982607 9982607 C T CRELD1 Silent p.S178S 0.20 TCGA-AH-6903-01 4 104032106 104032106 C T CENPE Missense_Mutation p.G2535S 0.29 probably_damaging(1) TCGA-AH-6903-01 4 122254212 122254212 C T QRFPR Splice_Site p.X188_splice 0.24 TCGA-AH-6903-01 4 138449920 138449920 T G PCDH18 Missense_Mutation p.S848R 0.28 deleterious(0.01) benign(0.411) TCGA-AH-6903-01 4 153268138 153268138 G A FBXW7 Nonsense_Mutation p.R224* 0.22 TCGA-AH-6903-01 4 155242013 155242013 T C DCHS2 Missense_Mutation p.E1058G 0.26 deleterious(0.02) possibly_damaging(0.59) TCGA-AH-6903-01 4 3042327 3042327 A G GRK4 Missense_Mutation p.K571R 0.17 tolerated_low_confidence(0.05) benign(0.118) TCGA-AH-6903-01 5 112174310 112174310 A - APC Frame_Shift_Del p.I1008Yfs*14 0.35 TCGA-AH-6903-01 5 131398261 131398261 G A IL3 Splice_Site p.X112_splice 0.34 TCGA-AH-6903-01 5 140627613 140627613 T A PCDHB15 3'UTR 0.31 TCGA-AH-6903-01 5 160758021 160758021 C T GABRB2 Missense_Mutation p.V316I 0.22 tolerated(0.05) probably_damaging(0.999) TCGA-AH-6903-01 5 38493876 38493876 T C LIFR Missense_Mutation p.I633V 0.29 tolerated(1) benign(0.001) TCGA-AH-6903-01 6 102134192 102134192 G A GRIK2 Silent p.P305P 0.36 TCGA-AH-6903-01 6 138817456 138817456 C T NHSL1 Silent p.P85P 0.39 TCGA-AH-6903-01 6 146755299 146755299 C T GRM1 Silent p.S984S 0.32 TCGA-AH-6903-01 6 38854643 38854643 C T DNAH8 Missense_Mutation p.T2562I 0.39 benign(0.049) TCGA-AH-6903-01 7 101838814 101838814 T C CUX1 Silent p.L396L 0.08 TCGA-AH-6903-01 7 136700285 136700285 G A CHRM2 Missense_Mutation p.V225I 0.26 tolerated(0.24) benign(0.139) TCGA-AH-6903-01 7 154767949 154767949 G A PAXIP1 Silent p.D177D 0.08 TCGA-AH-6903-01 7 43485084 43485084 C T HECW1 Silent p.D771D 0.46 TCGA-AH-6903-01 7 4900631 4900631 G A PAPOLB Missense_Mutation p.R270W 0.30 deleterious(0.01) possibly_damaging(0.86) TCGA-AH-6903-01 7 70880969 70880969 C T WBSCR17 Silent p.R228R 0.31 TCGA-AH-6903-01 7 77885378 77885378 G A MAGI2 Silent p.G643G 0.43 TCGA-AH-6903-01 7 93065447 93065447 C A CALCR Silent p.V356V 0.23 TCGA-AH-6903-01 8 39468371 39468371 T G ADAM18 Intron 0.33 TCGA-AH-6903-01 8 81897467 81897467 G A PAG1 Silent p.S140S 0.27 TCGA-AH-6903-01 8 87464850 87464850 G A WWP1 Missense_Mutation p.G779D 0.30 deleterious(0) probably_damaging(1) TCGA-AH-6903-01 8 99148899 99148899 G A POP1 Missense_Mutation p.G401S 0.34 deleterious(0.01) possibly_damaging(0.895) TCGA-AH-6903-01 9 119204767 119204767 G A ASTN2 Missense_Mutation p.T1137M 0.27 deleterious(0.03) unknown(0) TCGA-AH-6903-01 X 130409241 130409241 G A IGSF1 Silent p.S1073S 0.22 TCGA-AH-6903-01 X 131524904 131524904 G A MBNL3 Nonsense_Mutation p.Q248* 0.09 TCGA-AH-6903-01 X 13775867 13775867 C T OFD1 Silent p.F500F 0.36 TCGA-AH-6903-01 X 1510848 1510848 C G SLC25A6 Missense_Mutation p.A19P 0.08 deleterious(0.02) probably_damaging(0.992) TCGA-AH-6903-01 X 41586715 41586715 T C GPR82 Missense_Mutation p.F146L 0.73 tolerated(0.19) benign(0.31) TCGA-AH-6903-01 X 67273490 67273490 G A OPHN1 Missense_Mutation p.S774F 0.14 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-AH-6903-01 X 90690719 90690719 G A PABPC5 Missense_Mutation p.R48Q 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-BM-6198-01 10 105073999 105073999 C G PCGF6 Missense_Mutation p.E314Q 0.60 tolerated(0.15) possibly_damaging(0.857) TCGA-BM-6198-01 10 17362844 17362844 T C ST8SIA6 3'UTR 0.31 TCGA-BM-6198-01 10 48390245 48390245 C G RBP3 Missense_Mutation p.W211C 0.28 deleterious(0) probably_damaging(0.998) TCGA-BM-6198-01 10 71582191 71582191 C G COL13A1 Missense_Mutation p.P121A 0.16 tolerated(0.14) probably_damaging(0.986) TCGA-BM-6198-01 10 72195115 72195115 G A NODAL Missense_Mutation p.A273V 0.32 deleterious(0) probably_damaging(0.999) TCGA-BM-6198-01 10 73767090 73767090 C G CHST3 Missense_Mutation p.L101V 0.28 tolerated_low_confidence(0.07) probably_damaging(0.978) TCGA-BM-6198-01 10 78644660 78644660 A - KCNMA1 3'Flank 0.26 TCGA-BM-6198-01 11 20104577 20104577 T A NAV2 Missense_Mutation p.F1843I 0.44 deleterious(0) probably_damaging(0.992) TCGA-BM-6198-01 11 5172761 5172761 G C OR52A1 Missense_Mutation p.S280C 0.17 deleterious(0) probably_damaging(0.982) TCGA-BM-6198-01 11 65089063 65089063 C G CDC42EP2 3'UTR 0.32 TCGA-BM-6198-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.28 deleterious(0) benign(0.361) TCGA-BM-6198-01 12 29908767 29908767 G T TMTC1 Silent p.P202P 0.28 TCGA-BM-6198-01 12 31435503 31435503 C T FAM60A 3'UTR 0.26 TCGA-BM-6198-01 12 32134280 32134280 C T KIAA1551 Missense_Mutation p.H131Y 0.24 deleterious(0.01) possibly_damaging(0.854) TCGA-BM-6198-01 12 39726186 39726186 G A KIF21A Nonsense_Mutation p.R961* 0.21 TCGA-BM-6198-01 12 50746884 50746884 G A FAM186A Missense_Mutation p.T1244I 0.63 deleterious(0.04) possibly_damaging(0.791) TCGA-BM-6198-01 12 57550041 57550041 C G LRP1 Missense_Mutation p.I464M 0.31 possibly_damaging(0.569) TCGA-BM-6198-01 12 57865058 57865058 G T GLI1 Missense_Mutation p.Q845H 0.55 tolerated_low_confidence(0.1) possibly_damaging(0.498) TCGA-BM-6198-01 12 58121203 58121203 G A AGAP2 Missense_Mutation p.A1007V 0.60 tolerated(0.07) probably_damaging(0.994) TCGA-BM-6198-01 12 76461250 76461250 C T NAP1L1 Missense_Mutation p.R36H 0.33 tolerated(0.16) benign(0.01) TCGA-BM-6198-01 12 93968703 93968703 G A SOCS2 Silent p.K115K 0.44 TCGA-BM-6198-01 13 113819417 113819417 C T PROZ Nonsense_Mutation p.Q208* 0.46 TCGA-BM-6198-01 13 114115432 114115432 C G DCUN1D2 Silent p.A180A 0.33 TCGA-BM-6198-01 13 21553889 21553889 C T LATS2 Missense_Mutation p.E905K 0.32 deleterious(0) probably_damaging(0.977) TCGA-BM-6198-01 13 36050078 36050078 G A MAB21L1 Silent p.L66L 0.16 TCGA-BM-6198-01 13 41705666 41705666 C A KBTBD6 Missense_Mutation p.V328L 0.12 tolerated(0.33) benign(0.043) TCGA-BM-6198-01 13 41767412 41767412 C A KBTBD7 Missense_Mutation p.V328L 0.29 tolerated(0.32) benign(0.03) TCGA-BM-6198-01 13 96599372 96599372 A T UGGT2 Missense_Mutation p.D532E 0.44 tolerated(0.05) probably_damaging(0.909) TCGA-BM-6198-01 14 105270423 105270423 C T ZBTB42 3'UTR 0.54 TCGA-BM-6198-01 14 23282559 23282559 T C SLC7A7 Missense_Mutation p.T17A 0.08 tolerated(0.84) benign(0) TCGA-BM-6198-01 14 70924761 70924761 G A ADAM21 Missense_Mutation p.R182H 0.47 tolerated(0.2) benign(0.009) TCGA-BM-6198-01 14 71514649 71514649 T C PCNX Missense_Mutation p.F1429S 0.42 tolerated(0.14) benign(0.01) TCGA-BM-6198-01 14 96707050 96707050 C T BDKRB2 Missense_Mutation p.L129F 0.46 deleterious(0) probably_damaging(1) TCGA-BM-6198-01 15 20496765 20496765 G T CHEK2P2 RNA 0.36 TCGA-BM-6198-01 15 42437866 42437866 C T PLA2G4F Missense_Mutation p.A563T 0.52 tolerated(0.07) probably_damaging(0.995) TCGA-BM-6198-01 15 80452195 80452195 G T FAH Missense_Mutation p.R97I 0.45 deleterious(0) benign(0.053) TCGA-BM-6198-01 16 107107 107107 C T SNRNP25 Silent p.D121D 0.29 TCGA-BM-6198-01 16 15737283 15737283 A G NDE1 5'UTR 0.10 TCGA-BM-6198-01 16 29870783 29870784 - G CDIPT Frame_Shift_Ins p.H159Pfs*4 0.24 TCGA-BM-6198-01 16 31368598 31368598 G T ITGAX Nonsense_Mutation p.E115* 0.22 TCGA-BM-6198-01 16 69350141 69350141 C T VPS4A Silent p.S49S 0.32 TCGA-BM-6198-01 16 70993705 70993705 A G HYDIN Missense_Mutation p.I1996T 0.16 benign(0.028) TCGA-BM-6198-01 16 71483169 71483169 C A ZNF23 Missense_Mutation p.Q253H 0.29 deleterious(0.02) benign(0.078) TCGA-BM-6198-01 16 76556103 76556103 G A CNTNAP4 Missense_Mutation p.A829T 0.26 tolerated(0.21) benign(0.166) TCGA-BM-6198-01 16 88600186 88600186 A C ZFPM1 Missense_Mutation p.E607A 0.44 tolerated(0.06) benign(0.332) TCGA-BM-6198-01 16 9017144 9017144 C T USP7 Missense_Mutation p.R104H 0.27 deleterious(0.02) benign(0.091) TCGA-BM-6198-01 17 15965024 15965024 C A NCOR1 Missense_Mutation p.A1858S 0.45 benign(0.176) TCGA-BM-6198-01 17 16640883 16640883 C A CCDC144A Intron 0.39 TCGA-BM-6198-01 17 27802724 27802724 C G TAOK1 Missense_Mutation p.Q81E 0.45 tolerated(0.15) benign(0.182) TCGA-BM-6198-01 17 56492792 56492805 TCTGATAATAGCTT - RNF43 Frame_Shift_Del p.K45Sfs*25 0.47 TCGA-BM-6198-01 17 7287144 7287144 G A TNK1 Silent p.L181L 0.34 TCGA-BM-6198-01 17 7578412 7578412 A C TP53 Missense_Mutation p.V173G 0.50 deleterious(0) probably_damaging(1) TCGA-BM-6198-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.52 TCGA-BM-6198-01 17 9143033 9143033 T C NTN1 Silent p.Y521Y 0.39 TCGA-BM-6198-01 18 65181115 65181115 C G DSEL Missense_Mutation p.G254A 0.38 tolerated(0.44) benign(0.068) TCGA-BM-6198-01 19 10402835 10402835 G A ICAM5 Silent p.L266L 0.32 TCGA-BM-6198-01 19 11285228 11285228 G A KANK2 Silent p.A671A 0.28 TCGA-BM-6198-01 19 1625604 1625604 G T TCF3 Missense_Mutation p.S157Y 0.40 deleterious(0) possibly_damaging(0.594) TCGA-BM-6198-01 19 35804357 35804357 A G MAG Nonstop_Mutation p.*627Wext*38 0.09 TCGA-BM-6198-01 19 38958452 38958452 C T RYR1 Silent p.R1127R 0.21 TCGA-BM-6198-01 19 38966066 38966066 C T RYR1 Silent p.P1423P 0.22 TCGA-BM-6198-01 19 39760438 39760438 C T IFNL2 Missense_Mutation p.R161W 0.37 deleterious(0.04) benign(0.187) TCGA-BM-6198-01 19 40728803 40728803 C A CNTD2 3'UTR 0.50 TCGA-BM-6198-01 19 40771128 40771128 C G AKT2 Splice_Site p.X16_splice 0.30 TCGA-BM-6198-01 19 4171151 4171151 C T CREB3L3 Silent p.A318A 0.25 TCGA-BM-6198-01 19 42584297 42584297 C A ZNF574 Missense_Mutation p.H513Q 0.25 deleterious(0) possibly_damaging(0.85) TCGA-BM-6198-01 19 42584298 42584298 C T ZNF574 Silent p.L514L 0.25 TCGA-BM-6198-01 19 49104572 49104572 G A FAM83E Missense_Mutation p.R411W 0.23 deleterious(0) probably_damaging(1) TCGA-BM-6198-01 19 55143440 55143440 G T LILRB1 Missense_Mutation p.G138V 0.28 deleterious(0) probably_damaging(0.986) TCGA-BM-6198-01 19 57986499 57986500 - T ZNF772 Frame_Shift_Ins p.M72Nfs*12 0.21 TCGA-BM-6198-01 19 6743772 6743772 A G TRIP10 Silent p.E189E 0.30 TCGA-BM-6198-01 19 7794259 7794259 T A CLEC4G Missense_Mutation p.N292I 0.20 tolerated(0.12) benign(0.003) TCGA-BM-6198-01 19 8138035 8138035 G A FBN3 Missense_Mutation p.R2617W 0.26 tolerated(0.2) possibly_damaging(0.849) TCGA-BM-6198-01 1 10494713 10494733 GAAAATTTTGCCAAAGACCTT - APITD1 Splice_Site p.X60_splice 0.08 TCGA-BM-6198-01 1 113666765 113666765 A C LRIG2 3'UTR 0.50 TCGA-BM-6198-01 1 1248049 1248049 C G CPSF3L Missense_Mutation p.E448D 0.10 deleterious(0.05) possibly_damaging(0.856) TCGA-BM-6198-01 1 149900560 149900560 C A MTMR11 3'UTR 0.20 TCGA-BM-6198-01 1 155154620 155154632 CCCCAGGTCAGAC - TRIM46 Splice_Site p.X628_splice 0.25 TCGA-BM-6198-01 1 155253853 155253853 G T HCN3 Missense_Mutation p.G266V 0.24 deleterious(0) probably_damaging(0.985) TCGA-BM-6198-01 1 159683615 159683615 C T CRP Silent p.V125V 0.24 TCGA-BM-6198-01 1 173722410 173722410 G T KLHL20 Missense_Mutation p.G272V 0.45 tolerated(0.14) probably_damaging(0.961) TCGA-BM-6198-01 1 214816309 214816309 C T CENPF Missense_Mutation p.S1543L 0.20 benign(0.003) TCGA-BM-6198-01 1 245849658 245849658 C T KIF26B Missense_Mutation p.R1125C 0.48 deleterious(0) unknown(0) TCGA-BM-6198-01 1 35562967 35562967 G A ZMYM1 Silent p.V73V 0.40 TCGA-BM-6198-01 1 44683874 44683874 G A DMAP1 Intron 0.30 TCGA-BM-6198-01 1 45266813 45266813 T C PLK3 Missense_Mutation p.C142R 0.09 deleterious(0) possibly_damaging(0.908) TCGA-BM-6198-01 1 47280843 47280843 G T CYP4B1 Missense_Mutation p.W327L 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-BM-6198-01 1 5993373 5993373 G C NPHP4 Missense_Mutation p.S379C 0.61 deleterious(0.01) possibly_damaging(0.834) TCGA-BM-6198-01 1 63974219 63974219 C - ITGB3BP Frame_Shift_Del p.D49Mfs*4 0.27 TCGA-BM-6198-01 20 3065266 3065266 C T AVP Missense_Mutation p.A19T 0.26 deleterious(0) probably_damaging(1) TCGA-BM-6198-01 20 3129903 3129903 G C FASTKD5 5'UTR 0.20 TCGA-BM-6198-01 20 35060245 35060245 G A DLGAP4 Missense_Mutation p.R42H 0.29 tolerated(0.63) benign(0.04) TCGA-BM-6198-01 20 3654779 3654779 A T ADAM33 Missense_Mutation p.L224M 0.26 tolerated(0.09) possibly_damaging(0.862) TCGA-BM-6198-01 20 3846646 3846646 G A MAVS Missense_Mutation p.G492D 0.15 tolerated(0.25) benign(0.347) TCGA-BM-6198-01 20 49366328 49366328 C T PARD6B Missense_Mutation p.P141L 0.28 deleterious(0.02) benign(0.21) TCGA-BM-6198-01 20 58521711 58521711 A G FAM217B 3'UTR 0.29 TCGA-BM-6198-01 20 60902439 60902439 C T LAMA5 Silent p.V1654V 0.44 TCGA-BM-6198-01 21 34003838 34003838 T A SYNJ1 Missense_Mutation p.I1436F 0.30 tolerated_low_confidence(0.44) benign(0.016) TCGA-BM-6198-01 21 39673347 39673347 C A KCNJ15 3'UTR 0.30 TCGA-BM-6198-01 21 47692610 47692610 T - MCM3AP Frame_Shift_Del p.E777Gfs*3 0.25 TCGA-BM-6198-01 22 50615795 50615795 C T PANX2 Silent p.G218G 0.38 TCGA-BM-6198-01 2 116257122 116257122 T A DPP10 Missense_Mutation p.V107D 0.23 deleterious(0) probably_damaging(0.981) TCGA-BM-6198-01 2 131524913 131524913 C A AMER3 3'UTR 0.28 TCGA-BM-6198-01 2 136481544 136481544 T A R3HDM1 Missense_Mutation p.D994E 0.07 tolerated(1) benign(0.002) TCGA-BM-6198-01 2 149542282 149542282 G A EPC2 Missense_Mutation p.S688N 0.24 tolerated(0.24) benign(0.357) TCGA-BM-6198-01 2 152417789 152417789 T C NEB Missense_Mutation p.N6345S 0.29 probably_damaging(0.989) TCGA-BM-6198-01 2 169850275 169850275 C T ABCB11 Silent p.L243L 0.32 TCGA-BM-6198-01 2 207172275 207172275 A T ZDBF2 Missense_Mutation p.H1008L 0.27 deleterious(0) benign(0.012) TCGA-BM-6198-01 2 220251467 220251467 C T DNPEP Missense_Mutation p.A85T 0.30 deleterious(0.01) probably_damaging(0.979) TCGA-BM-6198-01 2 220466780 220466780 G A STK11IP Missense_Mutation p.C149Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-BM-6198-01 2 239016561 239016561 G A ESPNL Missense_Mutation p.D268N 0.27 deleterious(0.01) probably_damaging(1) TCGA-BM-6198-01 2 37475741 37475741 C T NDUFAF7 3'UTR 0.50 TCGA-BM-6198-01 2 44021910 44021910 A G DYNC2LI1 Intron 0.35 TCGA-BM-6198-01 2 73298764 73298764 G A SFXN5 Missense_Mutation p.P24L 0.26 tolerated(0.38) benign(0.215) TCGA-BM-6198-01 2 74042296 74042296 A C C2orf78 Missense_Mutation p.S316R 0.34 tolerated(0.23) benign(0.045) TCGA-BM-6198-01 3 111718317 111718317 G C TAGLN3 Missense_Mutation p.E16D 0.22 tolerated(0.23) benign(0.005) TCGA-BM-6198-01 3 124157827 124157827 C G KALRN Missense_Mutation p.I1045M 0.35 tolerated(0.1) benign(0.041) TCGA-BM-6198-01 3 137484168 137484168 G C SOX14 Missense_Mutation p.S181T 0.43 tolerated(0.37) benign(0.004) TCGA-BM-6198-01 3 197707346 197707346 C T LMLN Silent p.A233A 0.40 TCGA-BM-6198-01 3 32996055 32996055 A C CCR4 3'UTR 0.65 TCGA-BM-6198-01 3 38938569 38938569 C A SCN11A Missense_Mutation p.G724C 0.61 deleterious(0.02) probably_damaging(1) TCGA-BM-6198-01 3 38938570 38938570 A C SCN11A Missense_Mutation p.F723L 0.62 tolerated(0.2) probably_damaging(0.999) TCGA-BM-6198-01 3 64142835 64142835 A G PRICKLE2 Intron 0.47 TCGA-BM-6198-01 4 143066991 143066991 A T INPP4B Splice_Site p.X574_splice 0.41 TCGA-BM-6198-01 4 25278824 25278824 A G PI4K2B 3'UTR 0.12 TCGA-BM-6198-01 4 41648727 41648727 G A LIMCH1 Silent p.L494L 0.47 TCGA-BM-6198-01 4 54440127 54440128 CA - LNX1 Frame_Shift_Del p.A15Sfs*22 0.33 TCGA-BM-6198-01 4 55956213 55956213 G A KDR Silent p.I1034I 0.29 TCGA-BM-6198-01 4 7436638 7436638 C G PSAPL1 5'UTR 0.38 TCGA-BM-6198-01 5 122110816 122110816 A G SNX2 Silent p.E6E 0.35 TCGA-BM-6198-01 5 140186965 140186965 C T PCDHA4 Missense_Mutation p.R65W 0.18 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-BM-6198-01 5 140752102 140752102 G A PCDHGB3 Missense_Mutation p.R714H 0.44 tolerated(0.12) benign(0.22) TCGA-BM-6198-01 5 150056470 150056470 G C MYOZ3 3'UTR 0.40 TCGA-BM-6198-01 5 176315504 176315504 G T HK3 Missense_Mutation p.A378D 0.15 tolerated(0.49) benign(0.021) TCGA-BM-6198-01 5 43556027 43556027 C G PAIP1 Missense_Mutation p.A114P 0.43 deleterious(0.02) possibly_damaging(0.462) TCGA-BM-6198-01 5 54329634 54329634 C T GZMK Silent p.H225H 0.43 TCGA-BM-6198-01 5 55212519 55212519 C T IL31RA Silent p.D622D 0.46 TCGA-BM-6198-01 6 11201049 11201049 T C NEDD9 Intron 0.13 TCGA-BM-6198-01 6 13182884 13182884 G C PHACTR1 Missense_Mutation p.E45D 0.35 tolerated(0.11) benign(0.001) TCGA-BM-6198-01 6 138752630 138752630 G A NHSL1 Missense_Mutation p.P955L 0.39 tolerated_low_confidence(0.11) benign(0.024) TCGA-BM-6198-01 6 168191733 168191733 A T C6orf123 Missense_Mutation p.H8Q 0.31 deleterious_low_confidence(0) benign(0.412) TCGA-BM-6198-01 6 28227727 28227727 C T NKAPL Missense_Mutation p.S193L 0.26 tolerated(0.25) unknown(0) TCGA-BM-6198-01 6 30229001 30229007 ACCCAGC - HCG17 Intron 0.33 TCGA-BM-6198-01 6 31691516 31691516 G A C6orf25 Silent p.K54K 0.23 TCGA-BM-6198-01 6 32011633 32011633 C T TNXB Missense_Mutation p.R237Q 0.43 tolerated(0.35) benign(0.034) TCGA-BM-6198-01 6 42224468 42224468 T A TRERF1 Missense_Mutation p.M860L 0.33 tolerated(0.4) benign(0.008) TCGA-BM-6198-01 6 42224469 42224469 C G TRERF1 Silent p.V859V 0.33 TCGA-BM-6198-01 6 46669600 46669600 G C TDRD6 Missense_Mutation p.R2089S 0.26 tolerated(0.92) benign(0.004) TCGA-BM-6198-01 6 6145941 6145941 G A F13A1 Missense_Mutation p.R704W 0.36 deleterious(0) probably_damaging(1) TCGA-BM-6198-01 6 70897924 70897924 G T COL19A1 Missense_Mutation p.G1001V 0.12 deleterious(0) probably_damaging(0.934) TCGA-BM-6198-01 6 90408717 90408717 A G MDN1 Missense_Mutation p.L3012S 0.25 probably_damaging(0.991) TCGA-BM-6198-01 6 90529294 90529294 C A MDN1 Silent p.A11A 0.26 TCGA-BM-6198-01 7 100224895 100224895 C T TFR2 Missense_Mutation p.D663N 0.39 deleterious(0.03) benign(0.021) TCGA-BM-6198-01 7 107575957 107575957 T A LAMB1 Missense_Mutation p.E1364V 0.35 tolerated(0.06) benign(0.133) TCGA-BM-6198-01 7 123295992 123295992 C T LMOD2 5'UTR 0.50 TCGA-BM-6198-01 7 143632703 143632703 G T OR2F2 Silent p.V126V 0.26 TCGA-BM-6198-01 7 150094924 150094924 G A ZNF775 Missense_Mutation p.G452D 0.28 deleterious(0) probably_damaging(0.999) TCGA-BM-6198-01 7 1784732 1784732 G A ELFN1 Missense_Mutation p.R167H 0.17 deleterious(0) possibly_damaging(0.707) TCGA-BM-6198-01 7 27185227 27185227 G T HOXA6 3'UTR 0.15 TCGA-BM-6198-01 7 45016461 45016461 C T MYO1G Splice_Site p.X102_splice 0.37 TCGA-BM-6198-01 7 5642952 5642952 C T FSCN1 Silent p.D299D 0.18 TCGA-BM-6198-01 7 72966542 72966542 C T BCL7B Silent p.T41T 0.25 TCGA-BM-6198-01 7 77824371 77824371 G T MAGI2 Silent p.R697R 0.32 TCGA-BM-6198-01 7 92146929 92146929 C T PEX1 Silent p.A300A 0.28 TCGA-BM-6198-01 7 95657511 95657511 G A DYNC1I1 Missense_Mutation p.A349T 0.32 deleterious(0) probably_damaging(0.952) TCGA-BM-6198-01 7 98785975 98785975 C G KPNA7 Missense_Mutation p.G283A 0.20 deleterious(0) probably_damaging(1) TCGA-BM-6198-01 8 113650978 113650978 C T CSMD3 Missense_Mutation p.R1158H 0.26 deleterious(0) probably_damaging(0.988) TCGA-BM-6198-01 8 124664494 124664494 G A KLHL38 Nonsense_Mutation p.Q225* 0.26 TCGA-BM-6198-01 8 144801551 144801551 T A MAPK15 Missense_Mutation p.I207N 0.27 deleterious(0) probably_damaging(0.989) TCGA-BM-6198-01 8 144993388 144993388 G T PLEC Missense_Mutation p.P3671H 0.08 probably_damaging(0.989) TCGA-BM-6198-01 8 145065661 145065661 A C GRINA Silent p.P90P 0.32 TCGA-BM-6198-01 8 59518568 59518568 A G NSMAF Silent p.D293D 0.27 TCGA-BM-6198-01 8 72127879 72127879 G A EYA1 Missense_Mutation p.A482V 0.26 deleterious(0.04) benign(0.167) TCGA-BM-6198-01 8 87568542 87568542 T A CPNE3 Missense_Mutation p.F489L 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-BM-6198-01 8 98827582 98827582 C G LAPTM4B Missense_Mutation p.L171V 0.16 tolerated(0.31) benign(0.026) TCGA-BM-6198-01 8 99961256 99961256 G T OSR2 Missense_Mutation p.A26S 0.10 tolerated_low_confidence(0.13) possibly_damaging(0.684) TCGA-BM-6198-01 9 116860399 116860399 G T KIF12 5'UTR 0.24 TCGA-BM-6198-01 9 137804880 137804880 C T FCN1 Silent p.T150T 0.38 TCGA-BM-6198-01 9 139913367 139913367 C A ABCA2 Missense_Mutation p.Q570H 0.34 tolerated(0.36) benign(0.005) TCGA-BM-6198-01 9 73399082 73399082 C T TRPM3 Missense_Mutation p.D363N 0.25 deleterious(0.02) benign(0.05) TCGA-BM-6198-01 X 114425058 114425058 G A RBMXL3 Missense_Mutation p.V352I 0.60 tolerated_low_confidence(0.24) benign(0.067) TCGA-BM-6198-01 X 123556237 123556237 G A TENM1 Silent p.D1452D 0.62 TCGA-BM-6198-01 X 13336798 13336798 T G ATXN3L 3'UTR 0.82 TCGA-BM-6198-01 X 92966596 92966596 A T FAM133A 3'UTR 0.60 TCGA-CI-6619-01 10 104173750 104173750 C T PSD Silent p.E443E 0.19 TCGA-CI-6619-01 10 114925643 114925643 A G TCF7L2 Missense_Mutation p.Q574R 0.26 tolerated_low_confidence(0.58) benign(0.346) TCGA-CI-6619-01 10 15175312 15175312 G A NMT2 Missense_Mutation p.R148C 0.47 deleterious(0.01) benign(0.069) TCGA-CI-6619-01 10 17632335 17632336 - A PTPLA 3'UTR 0.30 TCGA-CI-6619-01 10 46111868 46111868 A T ZFAND4 3'UTR 0.10 TCGA-CI-6619-01 10 46111904 46111904 G C ZFAND4 Missense_Mutation p.P722A 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-CI-6619-01 10 48371626 48371626 G A ZNF488 3'UTR 0.16 TCGA-CI-6619-01 10 6264905 6264905 G C PFKFB3 Missense_Mutation p.V391L 0.08 possibly_damaging(0.477) TCGA-CI-6619-01 11 113608342 113608342 T C ZW10 Silent p.L656L 0.41 TCGA-CI-6619-01 11 124740592 124740592 G A ROBO3 Missense_Mutation p.R334H 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-CI-6619-01 11 128332291 128332291 C T ETS1 Missense_Mutation p.A475T 0.18 tolerated(0.14) probably_damaging(0.982) TCGA-CI-6619-01 11 2437197 2437197 A G TRPM5 Missense_Mutation p.V356A 0.12 deleterious(0) possibly_damaging(0.775) TCGA-CI-6619-01 11 62284299 62284299 A G AHNAK Missense_Mutation p.S5864P 0.08 probably_damaging(0.999) TCGA-CI-6619-01 11 64677563 64677563 G C ATG2A Silent p.A604A 0.55 TCGA-CI-6619-01 12 113386842 113386842 G A OAS3 Silent p.P402P 0.37 TCGA-CI-6619-01 12 121593916 121593916 A G P2RX7 Missense_Mutation p.K110R 0.07 tolerated(0.49) benign(0.022) TCGA-CI-6619-01 12 2693774 2693774 A G CACNA1C Missense_Mutation p.K777R 0.08 deleterious(0.03) benign(0.094) TCGA-CI-6619-01 12 43846451 43846451 C T ADAMTS20 Missense_Mutation p.R603Q 0.11 deleterious(0.02) probably_damaging(1) TCGA-CI-6619-01 12 48143210 48143210 A G RAPGEF3 Missense_Mutation p.L335P 0.17 deleterious(0.02) possibly_damaging(0.734) TCGA-CI-6619-01 12 49251729 49251729 G A RND1 3'UTR 0.18 TCGA-CI-6619-01 12 50492783 50492783 G C SMARCD1 Nonstop_Mutation p.*516Yext*23 0.38 TCGA-CI-6619-01 12 50571248 50571248 C G LIMA1 Missense_Mutation p.G628R 0.13 tolerated(0.76) benign(0.033) TCGA-CI-6619-01 12 54379296 54379296 G A HOXC10 Missense_Mutation p.A85T 0.22 tolerated(0.68) benign(0.02) TCGA-CI-6619-01 12 55250571 55250571 G A MUCL1 Missense_Mutation p.E40K 0.16 tolerated_low_confidence(0.07) unknown(0) TCGA-CI-6619-01 12 81110944 81110944 G A MYF5 Silent p.P34P 0.38 TCGA-CI-6619-01 13 78317219 78317219 C T SLAIN1 Intron 0.09 TCGA-CI-6619-01 13 88329453 88329453 C T SLITRK5 Missense_Mutation p.R604C 0.18 deleterious(0) probably_damaging(0.992) TCGA-CI-6619-01 13 99373834 99373834 T C SLC15A1 Silent p.K157K 0.14 TCGA-CI-6619-01 14 21875078 21875078 A T CHD8 Missense_Mutation p.D948E 0.28 deleterious(0) probably_damaging(0.994) TCGA-CI-6619-01 14 45716272 45716272 T - MIS18BP1 Frame_Shift_Del p.N73Ifs*8 0.10 TCGA-CI-6619-01 14 94780730 94780730 G A SERPINA6 Missense_Mutation p.R86W 0.35 deleterious(0) probably_damaging(0.988) TCGA-CI-6619-01 15 34396280 34396280 T C PGBD4 Silent p.P516P 0.10 TCGA-CI-6619-01 15 35529964 35529964 C T ANP32AP1 RNA 0.10 TCGA-CI-6619-01 15 42137487 42137487 A G PLA2G4B Silent p.K673K 0.10 TCGA-CI-6619-01 15 48431257 48431257 C G SLC24A5 Silent p.T321T 0.10 TCGA-CI-6619-01 15 58855731 58855731 G A LIPC Silent p.T399T 0.15 TCGA-CI-6619-01 15 91475081 91475081 C G HDDC3 Missense_Mutation p.E88Q 0.11 deleterious(0.01) benign(0.203) TCGA-CI-6619-01 16 22319479 22319479 G A POLR3E Missense_Mutation p.R33H 0.11 deleterious(0) possibly_damaging(0.641) TCGA-CI-6619-01 16 2499453 2499453 G A CCNF Silent p.T463T 0.27 TCGA-CI-6619-01 16 29899896 29899896 C T SEZ6L2 Missense_Mutation p.R335Q 0.27 tolerated(0.45) benign(0.183) TCGA-CI-6619-01 16 31474134 31474134 T C ARMC5 Silent p.G422G 0.08 TCGA-CI-6619-01 16 58622786 58622786 C T CNOT1 Missense_Mutation p.A43T 0.34 deleterious(0) probably_damaging(0.958) TCGA-CI-6619-01 16 88494926 88494926 G A ZNF469 Missense_Mutation p.D350N 0.13 benign(0) TCGA-CI-6619-01 16 90038532 90038532 G A CENPBD1 5'UTR 0.22 TCGA-CI-6619-01 17 37844108 37844108 G A PGAP3 Missense_Mutation p.P54S 0.13 tolerated(0.06) possibly_damaging(0.817) TCGA-CI-6619-01 17 44096073 44096073 G A MAPT Missense_Mutation p.V698I 0.09 tolerated(0.09) benign(0.016) TCGA-CI-6619-01 17 56676693 56676693 C T TEX14 Silent p.A677A 0.47 TCGA-CI-6619-01 17 61972614 61972614 G A CSH1 Intron 0.09 TCGA-CI-6619-01 17 7577532 7577532 G A TP53 Missense_Mutation p.P250L 0.39 deleterious(0) probably_damaging(1) TCGA-CI-6619-01 17 79667580 79667580 G T HGS Missense_Mutation p.A656S 0.10 tolerated(0.34) benign(0.027) TCGA-CI-6619-01 18 58039897 58039898 - C MC4R 5'UTR 0.17 TCGA-CI-6619-01 19 35556185 35556185 C T HPN Silent p.A281A 0.08 TCGA-CI-6619-01 19 44612142 44612142 C G ZNF224 Missense_Mutation p.T610S 0.12 tolerated(0.26) benign(0.034) TCGA-CI-6619-01 19 49703897 49703897 C T TRPM4 Silent p.F936F 0.23 TCGA-CI-6619-01 19 54754870 54754871 CT - LILRB5 Intron 0.28 TCGA-CI-6619-01 19 55710221 55710221 G A PTPRH Missense_Mutation p.R494C 0.19 benign(0.032) TCGA-CI-6619-01 1 11561557 11561557 C T PTCHD2 Nonsense_Mutation p.R170* 0.32 TCGA-CI-6619-01 1 156882589 156882589 C T PEAR1 Missense_Mutation p.P746L 0.07 deleterious(0) probably_damaging(0.936) TCGA-CI-6619-01 1 158943536 158943536 C T PYHIN1 Missense_Mutation p.R487C 0.32 benign(0) TCGA-CI-6619-01 1 16261010 16261010 A G SPEN Missense_Mutation p.T2759A 0.14 benign(0.001) TCGA-CI-6619-01 1 172277936 172277936 A G DNM3 Missense_Mutation p.K613R 0.09 deleterious(0.01) possibly_damaging(0.882) TCGA-CI-6619-01 1 245530305 245530305 A G KIF26B Missense_Mutation p.E212G 0.08 tolerated(0.05) unknown(0) TCGA-CI-6619-01 1 31426559 31426559 A C PUM1 Splice_Site p.X864_splice 0.36 TCGA-CI-6619-01 1 32713034 32713034 G C FAM167B Silent p.G4G 0.33 TCGA-CI-6619-01 1 36209097 36209097 A T CLSPN Missense_Mutation p.F1001I 0.13 deleterious(0.02) possibly_damaging(0.882) TCGA-CI-6619-01 1 55144987 55144987 G A MROH7 Missense_Mutation p.A701T 0.13 tolerated(0.21) possibly_damaging(0.837) TCGA-CI-6619-01 1 5925328 5925328 C T NPHP4 Missense_Mutation p.R1217H 0.75 tolerated(0.32) benign(0.033) TCGA-CI-6619-01 20 3002012 3002012 G A PTPRA Missense_Mutation p.V367M 0.08 deleterious(0) possibly_damaging(0.756) TCGA-CI-6619-01 20 33969827 33969827 A G UQCC1 Missense_Mutation p.L76P 0.08 tolerated(0.15) probably_damaging(0.999) TCGA-CI-6619-01 20 44999993 44999993 T A ELMO2 Missense_Mutation p.K600I 0.26 deleterious(0) possibly_damaging(0.776) TCGA-CI-6619-01 22 22277784 22277784 G A PPM1F Missense_Mutation p.T349M 0.43 tolerated(0.05) probably_damaging(0.934) TCGA-CI-6619-01 22 31524011 31524011 A G INPP5J Missense_Mutation p.D253G 0.08 deleterious(0.01) possibly_damaging(0.888) TCGA-CI-6619-01 22 50014132 50014132 C T C22orf34 Silent p.T182T 0.38 TCGA-CI-6619-01 2 138208522 138208522 C T THSD7B Nonsense_Mutation p.R1023* 0.10 TCGA-CI-6619-01 2 21230730 21230730 C A APOB Missense_Mutation p.A3004S 0.13 possibly_damaging(0.452) TCGA-CI-6619-01 3 113085054 113085054 C A WDR52 Missense_Mutation p.W849C 0.16 deleterious(0) probably_damaging(0.999) TCGA-CI-6619-01 3 169566000 169566000 T C LRRC31 Missense_Mutation p.K412R 0.14 tolerated(0.07) benign(0.009) TCGA-CI-6619-01 3 19436739 19436739 G A KCNH8 Silent p.A371A 0.15 TCGA-CI-6619-01 3 53857360 53857360 C T CHDH Missense_Mutation p.G226S 0.15 deleterious(0.04) probably_damaging(0.927) TCGA-CI-6619-01 4 100510856 100510856 A G MTTP Silent p.R150R 0.13 TCGA-CI-6619-01 4 106197517 106197517 A G TET2 Silent p.K1950K 0.08 TCGA-CI-6619-01 4 153258991 153258995 TGGGG - FBXW7 Frame_Shift_Del p.P274Vfs*11 0.25 TCGA-CI-6619-01 4 20611700 20611700 T C SLIT2 Missense_Mutation p.S1253P 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-CI-6619-01 4 26483526 26483526 C T CCKAR Missense_Mutation p.A341T 0.18 tolerated(0.56) benign(0.003) TCGA-CI-6619-01 4 38053592 38053592 T C TBC1D1 Intron 0.16 TCGA-CI-6619-01 4 82355042 82355042 G C RASGEF1B Missense_Mutation p.R426G 0.27 tolerated(0.2) benign(0.051) TCGA-CI-6619-01 5 112175358 112175358 C G APC Nonsense_Mutation p.S1356* 0.54 TCGA-CI-6619-01 5 118469391 118469391 G A DMXL1 Missense_Mutation p.S591N 0.21 tolerated(0.6) possibly_damaging(0.881) TCGA-CI-6619-01 5 129243804 129243804 C T CHSY3 Silent p.N279N 0.15 TCGA-CI-6619-01 5 140588820 140588820 C T PCDHB12 Missense_Mutation p.T114M 0.29 tolerated_low_confidence(0.06) benign(0.071) TCGA-CI-6619-01 5 141051195 141051195 C T ARAP3 Missense_Mutation p.R599H 0.21 deleterious(0) probably_damaging(0.941) TCGA-CI-6619-01 5 177576758 177576758 C T NHP2 Missense_Mutation p.D140N 0.42 tolerated(0.11) benign(0.006) TCGA-CI-6619-01 5 58147071 58147071 G A RAB3C Missense_Mutation p.D193N 0.38 tolerated(0.34) benign(0.004) TCGA-CI-6619-01 5 93732091 93732091 T G KIAA0825 Missense_Mutation p.K1004T 0.27 deleterious(0.05) benign(0.018) TCGA-CI-6619-01 6 160197202 160197202 G C ACAT2 Missense_Mutation p.D219H 0.13 deleterious(0) probably_damaging(1) TCGA-CI-6619-01 6 31431174 31431174 G A HCP5 RNA 0.11 TCGA-CI-6619-01 6 42893436 42893436 T C PTCRA 3'UTR 0.16 TCGA-CI-6619-01 6 64422055 64422055 A T PHF3 Missense_Mutation p.K1524I 0.09 tolerated(0.07) probably_damaging(0.914) TCGA-CI-6619-01 6 96659259 96659259 C A FUT9 3'UTR 0.12 TCGA-CI-6619-01 7 100490108 100490108 G A ACHE Missense_Mutation p.T467M 0.17 deleterious(0.03) probably_damaging(0.962) TCGA-CI-6619-01 7 128517344 128517344 C T KCP RNA 0.27 TCGA-CI-6619-01 7 129091565 129091565 G A STRIP2 Missense_Mutation p.R129Q 0.08 tolerated(0.06) benign(0.2) TCGA-CI-6619-01 7 150938678 150938678 C T SMARCD3 Missense_Mutation p.R280H 0.45 deleterious(0.03) probably_damaging(0.996) TCGA-CI-6619-01 7 38725645 38725645 G A FAM183B 5'UTR 0.19 TCGA-CI-6619-01 7 50097724 50097724 A C ZPBP Silent p.T116T 0.09 TCGA-CI-6619-01 7 65221510 65221510 T G SNORA22 3'Flank 0.33 TCGA-CI-6619-01 8 71053502 71053502 C T NCOA2 Missense_Mutation p.R982Q 0.07 tolerated(0.3) benign(0.285) TCGA-CI-6619-01 8 87878745 87878745 G A CNBD1 Missense_Mutation p.A8T 0.08 tolerated(0.82) benign(0.01) TCGA-CI-6619-01 X 125954937 125954937 A G CXorf64 Missense_Mutation p.T106A 0.21 deleterious(0.02) benign(0.139) TCGA-CI-6619-01 X 155232672 155232672 G T IL9R Missense_Mutation p.G44W 0.23 deleterious(0) probably_damaging(0.981) TCGA-CI-6619-01 X 32827653 32827653 G A DMD Silent p.I202I 0.37 TCGA-CI-6620-01 10 100189189 100189189 C T HPS1 Intron 0.13 TCGA-CI-6620-01 10 73326628 73326628 G A CDH23 Missense_Mutation p.V187I 0.23 tolerated(0.31) benign(0.014) TCGA-CI-6620-01 10 82098203 82098203 C T DYDC1 Intron 0.18 TCGA-CI-6620-01 11 130275579 130275579 G A ADAMTS8 Silent p.C848C 0.37 TCGA-CI-6620-01 11 18955439 18955439 G A MRGPRX1 Missense_Mutation p.A298V 0.26 tolerated(0.06) benign(0.001) TCGA-CI-6620-01 11 55681572 55681572 C A OR5W2 Missense_Mutation p.A163S 0.39 deleterious(0.02) benign(0.152) TCGA-CI-6620-01 12 118293321 118293321 G A KSR2 Silent p.C128C 0.17 TCGA-CI-6620-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.42 deleterious(0) benign(0.361) TCGA-CI-6620-01 12 64812700 64812700 C T XPOT Silent p.A105A 0.24 TCGA-CI-6620-01 12 85638731 85638731 G A LRRIQ1 3'UTR 0.29 TCGA-CI-6620-01 15 24921651 24921651 T C NPAP1 Missense_Mutation p.Y213H 0.20 tolerated(0.56) benign(0.001) TCGA-CI-6620-01 15 65262514 65262514 T G SPG21 Missense_Mutation p.N167H 0.34 deleterious(0.02) benign(0.346) TCGA-CI-6620-01 16 24192129 24192129 C T PRKCB Silent p.N471N 0.32 TCGA-CI-6620-01 16 28909713 28909714 - C ATP2A1 Frame_Shift_Ins p.K572Efs*9 0.33 TCGA-CI-6620-01 16 30369129 30369129 C T TBC1D10B 3'UTR 0.27 TCGA-CI-6620-01 16 30991490 30991490 C T SETD1A Silent p.N1461N 0.26 TCGA-CI-6620-01 16 3789726 3789726 C T CREBBP Splice_Site p.X1378_splice 0.22 TCGA-CI-6620-01 16 46958408 46958408 C T GPT2 Silent p.Y440Y 0.33 TCGA-CI-6620-01 16 66434779 66434779 C T CDH5 Missense_Mutation p.T566M 0.35 deleterious(0) probably_damaging(0.987) TCGA-CI-6620-01 17 7577582 7577583 - TGGA TP53 Frame_Shift_Ins p.Y234Pfs*7 0.30 TCGA-CI-6620-01 17 80019497 80019497 C T DUS1L Missense_Mutation p.A232T 0.17 deleterious(0.01) possibly_damaging(0.88) TCGA-CI-6620-01 18 14478897 14478897 T G CXADRP3 RNA 0.40 TCGA-CI-6620-01 18 9396379 9396379 G C TWSG1 Missense_Mutation p.E109Q 0.13 deleterious(0.01) benign(0.22) TCGA-CI-6620-01 19 11096909 11096909 G A SMARCA4 Missense_Mutation p.V134I 0.29 possibly_damaging(0.785) TCGA-CI-6620-01 19 12036002 12036002 T C ZNF763 5'UTR 0.45 TCGA-CI-6620-01 19 22155167 22155167 T A ZNF208 Missense_Mutation p.K890I 0.34 deleterious(0.02) unknown(0) TCGA-CI-6620-01 19 22271739 22271739 G C ZNF257 Missense_Mutation p.R396T 0.17 deleterious(0) benign(0.056) TCGA-CI-6620-01 19 37382346 37382346 A - ZNF829 3'UTR 0.27 TCGA-CI-6620-01 19 39965265 39965265 C T SUPT5H Silent p.S977S 0.34 TCGA-CI-6620-01 19 42736818 42736818 G A GSK3A Missense_Mutation p.T372M 0.13 tolerated(0.3) probably_damaging(0.998) TCGA-CI-6620-01 19 42814530 42814530 T C PRR19 Missense_Mutation p.F237L 0.09 tolerated(1) benign(0.001) TCGA-CI-6620-01 19 48343012 48343012 G - CRX Frame_Shift_Del p.G231Afs*140 0.15 TCGA-CI-6620-01 19 50310036 50310036 G T AP2A1 3'UTR 0.14 TCGA-CI-6620-01 19 52918555 52918556 - C ZNF528 Frame_Shift_Ins p.I151Hfs*12 0.14 TCGA-CI-6620-01 19 53644067 53644067 G A ZNF347 Missense_Mutation p.R673W 0.22 deleterious(0.02) benign(0.013) TCGA-CI-6620-01 19 54301646 54301646 G A NLRP12 Silent p.G926G 0.37 TCGA-CI-6620-01 19 54967586 54967586 C T LENG8 Missense_Mutation p.R463W 0.32 deleterious(0) possibly_damaging(0.901) TCGA-CI-6620-01 19 55994762 55994762 G A ZNF628 Silent p.P734P 0.37 TCGA-CI-6620-01 19 7806754 7806754 G A CD209 3'UTR 0.11 TCGA-CI-6620-01 19 9082977 9082977 C A MUC16 Missense_Mutation p.K2946N 0.07 unknown(0) TCGA-CI-6620-01 1 110775487 110775487 G A KCNC4 3'UTR 0.21 TCGA-CI-6620-01 1 112269921 112269921 C T FAM212B Missense_Mutation p.R188H 0.34 tolerated(0.17) benign(0.243) TCGA-CI-6620-01 1 17556621 17556621 A G PADI1 Missense_Mutation p.D324G 0.32 tolerated(0.3) possibly_damaging(0.874) TCGA-CI-6620-01 1 206139232 206139232 G A FAM72A 5'UTR 0.30 TCGA-CI-6620-01 1 225341465 225341465 T A DNAH14 Missense_Mutation p.F817Y 0.34 deleterious(0) probably_damaging(1) TCGA-CI-6620-01 1 229661803 229661803 A G ABCB10 Missense_Mutation p.S596P 0.30 tolerated(0.09) possibly_damaging(0.611) TCGA-CI-6620-01 1 229667428 229667428 G A ABCB10 Missense_Mutation p.R464C 0.20 deleterious(0.01) benign(0.313) TCGA-CI-6620-01 1 235715439 235715439 G A GNG4 Silent p.R66R 0.38 TCGA-CI-6620-01 1 32051482 32051482 G A TINAGL1 Intron 0.41 TCGA-CI-6620-01 20 1558984 1558984 C T RP4-576H24.4 Missense_Mutation p.G144R 0.31 tolerated(0.06) possibly_damaging(0.856) TCGA-CI-6620-01 20 17640484 17640484 C T RRBP1 Intron 0.13 TCGA-CI-6620-01 20 61461027 61461027 C T COL9A3 Silent p.G367G 0.55 TCGA-CI-6620-01 20 62076010 62076010 A G KCNQ2 Splice_Site p.X230_splice 0.57 TCGA-CI-6620-01 21 11039314 11039314 C A BAGE2 RNA 0.05 TCGA-CI-6620-01 21 27124543 27124543 A G GABPA Missense_Mutation p.Y184C 0.29 tolerated(0.16) probably_damaging(0.979) TCGA-CI-6620-01 2 11300652 11300652 G A PQLC3 Silent p.E68E 0.15 TCGA-CI-6620-01 2 164591479 164591479 A T FIGN 5'UTR 0.21 TCGA-CI-6620-01 2 179486243 179486243 C A TTN Missense_Mutation p.R15103L 0.29 TCGA-CI-6620-01 2 238259820 238259820 C T COL6A3 Missense_Mutation p.A2257T 0.45 unknown(0) TCGA-CI-6620-01 2 241657477 241657477 C T KIF1A Missense_Mutation p.G1775R 0.34 deleterious(0) probably_damaging(1) TCGA-CI-6620-01 2 47136283 47136283 G C MCFD2 Missense_Mutation p.P10A 0.66 tolerated_low_confidence(0.48) benign(0.03) TCGA-CI-6620-01 3 100362136 100362136 C T GPR128 Missense_Mutation p.S242F 0.30 deleterious(0) probably_damaging(0.973) TCGA-CI-6620-01 3 142840199 142840199 G A CHST2 Missense_Mutation p.G181S 0.26 deleterious(0) probably_damaging(0.999) TCGA-CI-6620-01 3 57454539 57454539 T C snoU13 3'Flank 0.27 TCGA-CI-6620-01 4 151504985 151504985 G A MAB21L2 Silent p.P268P 0.43 TCGA-CI-6620-01 4 153247327 153247327 T - FBXW7 Frame_Shift_Del p.Q492Rfs*6 0.31 TCGA-CI-6620-01 4 170988506 170988506 C T AADAT Missense_Mutation p.E312K 0.27 tolerated(0.28) benign(0.049) TCGA-CI-6620-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.44 TCGA-CI-6620-01 5 140724410 140724410 C T PCDHGA3 Silent p.D270D 0.24 TCGA-CI-6620-01 5 149602710 149602710 C T CAMK2A Silent p.E436E 0.15 TCGA-CI-6620-01 5 175386835 175386835 C T THOC3 3'UTR 0.61 TCGA-CI-6620-01 5 3599404 3599404 G A IRX1 Silent p.A114A 0.14 TCGA-CI-6620-01 5 36195284 36195284 T C NADK2 Missense_Mutation p.K431E 0.17 tolerated(1) benign(0.001) TCGA-CI-6620-01 5 55236927 55236927 C T IL6ST Missense_Mutation p.G914S 0.20 tolerated(0.05) probably_damaging(1) TCGA-CI-6620-01 5 79733476 79733476 C G ZFYVE16 Missense_Mutation p.F324L 0.08 tolerated(0.66) benign(0.003) TCGA-CI-6620-01 6 152757143 152757143 G A SYNE1 Silent p.L1415L 0.34 TCGA-CI-6620-01 6 165756927 165756927 C T PDE10A Missense_Mutation p.V684I 0.31 tolerated(0.51) benign(0.017) TCGA-CI-6620-01 6 24832525 24832525 A G FAM65B Missense_Mutation p.V789A 0.26 deleterious(0.01) benign(0.197) TCGA-CI-6620-01 6 30671047 30671047 A G MDC1 Missense_Mutation p.V1900A 0.28 deleterious(0) probably_damaging(0.988) TCGA-CI-6620-01 7 154684138 154684138 T C DPP6 Missense_Mutation p.I849T 0.10 tolerated(0.48) benign(0.087) TCGA-CI-6620-01 7 65444800 65444800 C A GUSB Silent p.R165R 0.33 TCGA-CI-6620-01 8 12886758 12886758 T G KIAA1456 3'UTR 0.09 TCGA-CI-6620-01 8 12957877 12957877 C T DLC1 Missense_Mutation p.E657K 0.24 tolerated(0.06) possibly_damaging(0.506) TCGA-CI-6620-01 8 67504747 67504747 T C MYBL1 Silent p.E265E 0.10 TCGA-CI-6620-01 9 119976742 119976742 G A ASTN2 Missense_Mutation p.R304W 0.33 deleterious_low_confidence(0.03) unknown(0) TCGA-CI-6620-01 9 12693973 12693973 T - TYRP1 5'UTR 0.23 TCGA-CI-6620-01 9 32631117 32631117 C A TAF1L Missense_Mutation p.Q1487H 0.31 tolerated(0.12) possibly_damaging(0.71) TCGA-CI-6620-01 9 34833837 34833837 G T FAM205B RNA 0.34 TCGA-CI-6620-01 9 77631258 77631258 A T C9orf41 Silent p.T172T 0.19 TCGA-CI-6620-01 9 95077797 95077797 C T NOL8 Missense_Mutation p.M370I 0.28 tolerated(0.35) benign(0.002) TCGA-CI-6620-01 X 10182007 10182007 C T CLCN4 Silent p.D621D 0.22 TCGA-CI-6620-01 X 122772837 122772837 A T THOC2 Silent p.P596P 0.24 TCGA-CI-6620-01 X 135956396 135956396 G A RBMX Missense_Mutation p.R361C 0.14 tolerated(0.08) unknown(0) TCGA-CI-6620-01 X 152157497 152157497 G C PNMA5 3'UTR 0.38 TCGA-CI-6620-01 X 23803819 23803819 G A SAT1 Missense_Mutation p.R121H 0.16 tolerated(0.34) benign(0.001) TCGA-CI-6620-01 X 38147244 38147244 G A RPGR Silent p.N541N 0.29 TCGA-CI-6621-01 10 116075427 116075427 G A AFAP1L2 Silent p.A168A 0.35 TCGA-CI-6621-01 10 129055679 129055679 C T DOCK1 Silent p.N989N 0.45 TCGA-CI-6621-01 10 129536836 129536836 C T FOXI2 Silent p.N188N 0.20 TCGA-CI-6621-01 10 27539521 27539521 G A RP11-85G18.6 RNA 0.33 TCGA-CI-6621-01 10 5791443 5791443 C T FAM208B Missense_Mutation p.S2020L 0.28 tolerated(1) benign(0) TCGA-CI-6621-01 10 7262397 7262397 G A SFMBT2 Missense_Mutation p.R436W 0.21 deleterious(0) probably_damaging(0.924) TCGA-CI-6621-01 10 88206045 88206045 C G WAPAL Missense_Mutation p.E1092D 0.10 tolerated(0.08) possibly_damaging(0.628) TCGA-CI-6621-01 11 102991228 102991228 G A DYNC2H1 Missense_Mutation p.S351N 0.28 benign(0.005) TCGA-CI-6621-01 11 10597784 10597784 G A MRVI1 3'UTR 0.30 TCGA-CI-6621-01 11 113105851 113105851 T A NCAM1 Missense_Mutation p.I646N 0.38 tolerated(0.3) benign(0.115) TCGA-CI-6621-01 11 113857289 113857289 C A HTR3A Missense_Mutation p.P258H 0.16 deleterious(0) probably_damaging(0.998) TCGA-CI-6621-01 11 132527046 132527046 C T OPCML Silent p.P112P 0.13 TCGA-CI-6621-01 11 133714516 133714516 C T SPATA19 Missense_Mutation p.R52Q 0.30 tolerated(0.63) benign(0) TCGA-CI-6621-01 11 18735960 18735960 C T IGSF22 Silent p.T554T 0.18 TCGA-CI-6621-01 11 30255300 30255300 C T FSHB Nonsense_Mutation p.R115* 0.31 TCGA-CI-6621-01 11 56345198 56345198 C G OR5M10 5'UTR 0.09 TCGA-CI-6621-01 11 73964585 73964585 G A PPME1 3'UTR 0.38 TCGA-CI-6621-01 11 77884837 77884837 C T KCTD21 Missense_Mutation p.R255Q 0.37 tolerated(0.08) possibly_damaging(0.885) TCGA-CI-6621-01 11 92715176 92715176 T A MTNR1B Missense_Mutation p.C263S 0.37 deleterious(0) probably_damaging(1) TCGA-CI-6621-01 11 95712800 95712800 C A MAML2 Missense_Mutation p.G928V 0.41 unknown(0) TCGA-CI-6621-01 12 101336254 101336254 G T ANO4 Nonsense_Mutation p.E98* 0.17 TCGA-CI-6621-01 12 118462802 118462802 G A RFC5 Missense_Mutation p.V190M 0.48 deleterious(0) benign(0.063) TCGA-CI-6621-01 12 21590675 21590675 C G PYROXD1 Missense_Mutation p.A4G 0.13 tolerated_low_confidence(0.12) benign(0.044) TCGA-CI-6621-01 12 33559864 33559864 T G SYT10 Missense_Mutation p.K313Q 0.13 deleterious(0.01) probably_damaging(0.985) TCGA-CI-6621-01 12 4921251 4921251 G C KCNA6 3'UTR 0.11 TCGA-CI-6621-01 12 57601991 57601991 A G LRP1 Silent p.P4010P 0.10 TCGA-CI-6621-01 12 8075422 8075422 C T SLC2A3 Missense_Mutation p.A423T 0.33 deleterious(0.01) probably_damaging(0.929) TCGA-CI-6621-01 13 23913600 23913600 G T SACS Missense_Mutation p.P1472H 0.28 probably_damaging(0.999) TCGA-CI-6621-01 13 37583458 37583458 C G SUPT20H 3'Flank 0.06 TCGA-CI-6621-01 13 38153364 38153364 A C POSTN Splice_Site p.X597_splice 0.11 TCGA-CI-6621-01 14 104470578 104470578 G A TDRD9 Missense_Mutation p.R496H 0.17 deleterious(0.05) probably_damaging(0.978) TCGA-CI-6621-01 14 20020030 20020030 C T POTEM Nonsense_Mutation p.W64* 0.10 TCGA-CI-6621-01 14 70633479 70633479 C T SLC8A3 Missense_Mutation p.R554Q 0.33 deleterious(0.02) probably_damaging(1) TCGA-CI-6621-01 14 73822467 73822467 T G NUMB 5'UTR 0.25 TCGA-CI-6621-01 14 89878660 89878660 G A FOXN3 Missense_Mutation p.A54V 0.24 tolerated(0.23) benign(0.06) TCGA-CI-6621-01 15 64388263 64388263 C A SNX1 Silent p.P17P 0.09 TCGA-CI-6621-01 15 75013060 75013060 C T CYP1A1 Missense_Mutation p.G437S 0.14 deleterious(0.01) possibly_damaging(0.502) TCGA-CI-6621-01 15 89811685 89811685 A T FANCI Missense_Mutation p.I271F 0.07 deleterious(0) possibly_damaging(0.622) TCGA-CI-6621-01 16 396965 396965 G A AXIN1 Missense_Mutation p.P21S 0.48 deleterious(0) probably_damaging(1) TCGA-CI-6621-01 16 4650307 4650307 G A C16orf96 Missense_Mutation p.A1139T 0.19 tolerated(1) possibly_damaging(0.695) TCGA-CI-6621-01 16 46943598 46943598 G T GPT2 Silent p.T193T 0.38 TCGA-CI-6621-01 16 51172863 51172863 G A SALL1 Silent p.N1090N 0.30 TCGA-CI-6621-01 16 75513568 75513568 C T CHST6 Silent p.S53S 0.38 TCGA-CI-6621-01 17 19316390 19316390 T C RNF112 Missense_Mutation p.V174A 0.09 deleterious(0) possibly_damaging(0.876) TCGA-CI-6621-01 17 3030757 3030757 G T OR1G1 Missense_Mutation p.S30Y 0.12 deleterious(0) benign(0.001) TCGA-CI-6621-01 17 32690110 32690110 T C CCL1 Missense_Mutation p.K24R 0.15 tolerated(0.38) benign(0.007) TCGA-CI-6621-01 17 6921332 6921332 A G RNASEK 3'Flank 0.10 TCGA-CI-6621-01 17 72915905 72915905 C T USH1G Silent p.P342P 0.11 TCGA-CI-6621-01 17 74625194 74625194 G A ST6GALNAC1 Missense_Mutation p.T244M 0.23 benign(0.1) TCGA-CI-6621-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.56 deleterious(0) probably_damaging(0.998) TCGA-CI-6621-01 17 76794444 76794444 C A USP36 Intron 0.25 TCGA-CI-6621-01 18 12030353 12030353 G A IMPA2 Missense_Mutation p.D255N 0.20 deleterious(0.02) benign(0.019) TCGA-CI-6621-01 18 43490628 43490628 G A EPG5 Missense_Mutation p.R1355C 0.50 deleterious(0) probably_damaging(0.988) TCGA-CI-6621-01 19 1438537 1438537 C A RPS15 Intron 0.13 TCGA-CI-6621-01 19 31767899 31767899 G T TSHZ3 Missense_Mutation p.H934N 0.27 deleterious(0.01) benign(0.11) TCGA-CI-6621-01 19 39592122 39592122 G A PAPL Missense_Mutation p.R353Q 0.20 tolerated(0.36) benign(0.001) TCGA-CI-6621-01 19 3964332 3964332 G T DAPK3 Missense_Mutation p.P155T 0.09 deleterious(0.02) benign(0.141) TCGA-CI-6621-01 19 42351632 42351632 C T DMRTC2 Missense_Mutation p.R46C 0.41 deleterious(0) probably_damaging(1) TCGA-CI-6621-01 19 44223631 44223631 G A IRGC Silent p.L307L 0.53 TCGA-CI-6621-01 19 47969266 47969266 G A SLC8A2 Missense_Mutation p.T132M 0.29 deleterious(0) probably_damaging(1) TCGA-CI-6621-01 19 49001497 49001497 C T LMTK3 Silent p.A972A 0.38 TCGA-CI-6621-01 19 53085918 53085918 C T ZNF701 Silent p.L268L 0.25 TCGA-CI-6621-01 19 5844673 5844673 G A FUT3 Missense_Mutation p.R60C 0.19 deleterious(0.03) benign(0.008) TCGA-CI-6621-01 19 9075229 9075230 - G MUC16 Frame_Shift_Ins p.S4073Lfs*9 0.16 TCGA-CI-6621-01 1 100573009 100573009 G C SASS6 Missense_Mutation p.A416G 0.09 tolerated(0.72) benign(0.037) TCGA-CI-6621-01 1 110038891 110038891 A G CYB561D1 3'UTR 0.09 TCGA-CI-6621-01 1 120926984 120926984 G T FCGR1B 3'UTR 0.14 TCGA-CI-6621-01 1 152082000 152082000 T C TCHH Silent p.K1231K 0.34 TCGA-CI-6621-01 1 152191578 152191578 G A HRNR Nonsense_Mutation p.R843* 0.36 TCGA-CI-6621-01 1 156104648 156104648 A G LMNA Missense_Mutation p.N231S 0.42 tolerated(1) benign(0.001) TCGA-CI-6621-01 1 158909401 158909401 T C PYHIN1 Intron 0.14 TCGA-CI-6621-01 1 161161356 161161356 T G ADAMTS4 Splice_Site p.X696_splice 0.17 TCGA-CI-6621-01 1 172013550 172013550 G T DNM3 Missense_Mutation p.R385L 0.07 deleterious(0.04) probably_damaging(0.993) TCGA-CI-6621-01 1 176845742 176845742 G A ASTN1 Missense_Mutation p.R1132W 0.20 deleterious(0) probably_damaging(0.993) TCGA-CI-6621-01 1 181726197 181726197 A C CACNA1E Missense_Mutation p.I1422L 0.12 tolerated(0.07) benign(0.112) TCGA-CI-6621-01 1 202531995 202531995 G A PPP1R12B Missense_Mutation p.R866H 0.06 deleterious(0.03) probably_damaging(0.95) TCGA-CI-6621-01 1 205819126 205819126 C T PM20D1 Silent p.S25S 0.08 TCGA-CI-6621-01 1 213403864 213403864 A T RPS6KC1 Missense_Mutation p.T357S 0.41 tolerated(0.07) probably_damaging(0.993) TCGA-CI-6621-01 1 22186379 22186379 A G HSPG2 Missense_Mutation p.S1711P 0.10 probably_damaging(0.918) TCGA-CI-6621-01 1 224499554 224499554 G C NVL Missense_Mutation p.T97S 0.35 tolerated(0.87) benign(0.001) TCGA-CI-6621-01 1 228548322 228548322 C T OBSCN Intron 0.15 TCGA-CI-6621-01 1 237865352 237865352 G A RYR2 Missense_Mutation p.V3148M 0.08 possibly_damaging(0.611) TCGA-CI-6621-01 1 32119210 32119210 G A COL16A1 Silent p.P1534P 0.52 TCGA-CI-6621-01 1 70493997 70493998 TG - LRRC7 Frame_Shift_Del p.V609Efs*5 0.11 TCGA-CI-6621-01 1 75602913 75602913 C T LHX8 Silent p.C78C 0.54 TCGA-CI-6621-01 1 77510110 77510110 C T ST6GALNAC5 Silent p.N161N 0.39 TCGA-CI-6621-01 20 34457449 34457449 C T PHF20 Missense_Mutation p.R300C 0.35 deleterious(0.01) probably_damaging(0.931) TCGA-CI-6621-01 20 3627591 3627591 G A ATRN 3'UTR 0.78 TCGA-CI-6621-01 20 39795345 39795345 G A PLCG1 Missense_Mutation p.R716H 0.36 deleterious(0) probably_damaging(0.993) TCGA-CI-6621-01 20 42275625 42275625 G C IFT52 3'UTR 0.05 TCGA-CI-6621-01 20 44838978 44838978 C T CDH22 Silent p.A418A 0.33 TCGA-CI-6621-01 20 52192519 52192519 G C ZNF217 Missense_Mutation p.D928E 0.05 tolerated(0.85) benign(0.028) TCGA-CI-6621-01 20 55982632 55982632 C T RBM38 Silent p.I150I 0.29 TCGA-CI-6621-01 22 22042373 22042373 C A PPIL2 Silent p.G333G 0.38 TCGA-CI-6621-01 2 141079566 141079566 C G LRP1B Missense_Mutation p.L4202F 0.06 possibly_damaging(0.587) TCGA-CI-6621-01 2 165552243 165552243 G A COBLL1 Silent p.N591N 0.13 TCGA-CI-6621-01 2 171573627 171573627 G A SP5 Missense_Mutation p.G304S 0.30 deleterious(0.01) benign(0.015) TCGA-CI-6621-01 2 189872848 189872849 AG - COL3A1 Frame_Shift_Del p.G1170* 0.19 TCGA-CI-6621-01 2 208994333 208994333 C T CRYGC Silent p.P28P 0.38 TCGA-CI-6621-01 2 219494262 219494262 G A PLCD4 Missense_Mutation p.R332H 0.29 deleterious(0) probably_damaging(0.995) TCGA-CI-6621-01 2 233740678 233740678 G A C2orf82 Silent p.T34T 0.42 TCGA-CI-6621-01 2 238249186 238249186 G A COL6A3 Silent p.N2791N 0.28 TCGA-CI-6621-01 2 48030737 48030738 - GA MSH6 Frame_Shift_Ins p.E1119Rfs*27 0.23 TCGA-CI-6621-01 2 61018964 61018964 A G PAPOLG Missense_Mutation p.K489E 0.29 deleterious(0) possibly_damaging(0.686) TCGA-CI-6621-01 2 71043808 71043808 C T CLEC4F Silent p.T235T 0.33 TCGA-CI-6621-01 2 71660301 71660301 A G ZNF638 Missense_Mutation p.D1920G 0.05 deleterious(0) probably_damaging(0.998) TCGA-CI-6621-01 2 75720624 75720624 C T EVA1A Missense_Mutation p.R66H 0.41 tolerated(0.23) benign(0.002) TCGA-CI-6621-01 3 140265423 140265423 G A CLSTN2 Missense_Mutation p.R525H 0.46 deleterious(0.03) possibly_damaging(0.534) TCGA-CI-6621-01 3 14745919 14745919 G T C3orf20 Missense_Mutation p.M318I 0.12 tolerated(1) benign(0.007) TCGA-CI-6621-01 3 150645934 150645934 T A CLRN1 Missense_Mutation p.H176L 0.28 deleterious(0.01) possibly_damaging(0.599) TCGA-CI-6621-01 3 155547542 155547542 G C SLC33A1 Missense_Mutation p.P473A 0.07 tolerated(0.51) benign(0.01) TCGA-CI-6621-01 3 175520870 175520870 T C NAALADL2 Missense_Mutation p.L756P 0.10 tolerated(0.18) possibly_damaging(0.451) TCGA-CI-6621-01 3 38520643 38520643 C T ACVR2B Missense_Mutation p.R231W 0.24 tolerated(0.13) benign(0.023) TCGA-CI-6621-01 3 49837196 49837196 C A CDHR4 Splice_Site p.X17_splice 0.23 TCGA-CI-6621-01 4 10542173 10542173 T A CLNK Missense_Mutation p.S183C 0.06 tolerated(0.08) benign(0.023) TCGA-CI-6621-01 4 146067564 146067564 C G OTUD4 Missense_Mutation p.R361T 0.09 tolerated(0.06) benign(0.394) TCGA-CI-6621-01 4 172735800 172735800 T C GALNTL6 Silent p.P23P 0.22 TCGA-CI-6621-01 4 5798894 5798894 C T EVC Missense_Mutation p.R678C 0.31 tolerated(0.06) possibly_damaging(0.541) TCGA-CI-6621-01 4 69978410 69978410 T C UGT2B7 Missense_Mutation p.F516L 0.04 tolerated(0.41) benign(0.015) TCGA-CI-6621-01 5 112175348 112175348 G T APC Nonsense_Mutation p.E1353* 0.62 TCGA-CI-6621-01 5 118788195 118788195 C T HSD17B4 5'Flank 0.19 TCGA-CI-6621-01 5 13792144 13792144 C T DNAH5 Missense_Mutation p.G2803R 0.25 probably_damaging(0.988) TCGA-CI-6621-01 5 140532265 140532265 C G PCDHB6 3'UTR 0.10 TCGA-CI-6621-01 5 147012260 147012260 G A JAKMIP2 Nonsense_Mutation p.R587* 0.19 TCGA-CI-6621-01 5 63509467 63509467 G T RNF180 Missense_Mutation p.C105F 0.12 deleterious(0) possibly_damaging(0.831) TCGA-CI-6621-01 6 116948931 116948931 G A RSPH4A Missense_Mutation p.R354H 0.33 deleterious(0.02) probably_damaging(1) TCGA-CI-6621-01 6 128388922 128388922 A G PTPRK Silent p.V633V 0.11 TCGA-CI-6621-01 6 132910614 132910614 A G TAAR5 Missense_Mutation p.F71S 0.18 deleterious(0) possibly_damaging(0.807) TCGA-CI-6621-01 6 152129076 152129076 C G ESR1 Missense_Mutation p.S10C 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.765) TCGA-CI-6621-01 6 168376791 168376791 G T RP3-470B24.5 RNA 0.15 TCGA-CI-6621-01 6 35287656 35287656 G A DEF6 Silent p.E481E 0.06 TCGA-CI-6621-01 6 39847134 39847134 G A DAAM2 Missense_Mutation p.G576S 0.18 tolerated(0.91) benign(0) TCGA-CI-6621-01 6 42231140 42231140 C A TRERF1 Missense_Mutation p.G601V 0.15 tolerated(0.17) probably_damaging(0.953) TCGA-CI-6621-01 6 56375994 56375994 C G DST Splice_Site p.X3637_splice 0.12 TCGA-CI-6621-01 6 90660040 90660040 C T BACH2 Silent p.S595S 0.19 TCGA-CI-6621-01 7 141424833 141424833 G A WEE2 Missense_Mutation p.R410Q 0.28 tolerated(0.96) benign(0.037) TCGA-CI-6621-01 7 44080001 44080001 C T DBNL 5'Flank 0.31 TCGA-CI-6621-01 7 8790960 8790960 C T NXPH1 Missense_Mutation p.S126F 0.10 tolerated(0.31) probably_damaging(0.999) TCGA-CI-6621-01 7 97862784 97862784 C T TECPR1 Missense_Mutation p.G541S 0.08 deleterious(0.03) benign(0.087) TCGA-CI-6621-01 8 141034145 141034145 G C TRAPPC9 Missense_Mutation p.S961C 0.19 deleterious(0) probably_damaging(0.988) TCGA-CI-6621-01 8 143618431 143618431 C T BAI1 Silent p.H1218H 0.33 TCGA-CI-6621-01 8 48766652 48766652 C G PRKDC Missense_Mutation p.Q2294H 0.05 benign(0.382) TCGA-CI-6621-01 8 55538658 55538658 A G RP1 Missense_Mutation p.E739G 0.26 tolerated(0.25) benign(0.021) TCGA-CI-6621-01 8 69046378 69046378 C T PREX2 Missense_Mutation p.A1284V 0.38 tolerated(0.06) benign(0.003) TCGA-CI-6621-01 8 81571875 81571875 C G ZNF704 Missense_Mutation p.G326A 0.12 deleterious(0.04) possibly_damaging(0.539) TCGA-CI-6621-01 9 103235857 103235857 C G TMEFF1 Missense_Mutation p.R11G 0.40 tolerated_low_confidence(0.1) benign(0.25) TCGA-CI-6621-01 9 131860875 131860875 C A CRAT Missense_Mutation p.K380N 0.21 deleterious(0) probably_damaging(0.991) TCGA-CI-6621-01 9 140128353 140128353 C T SLC34A3 Silent p.C295C 0.09 TCGA-CI-6621-01 9 37745571 37745571 C G FRMPD1 Missense_Mutation p.P1181R 0.11 tolerated_low_confidence(0.06) benign(0.015) TCGA-CI-6621-01 X 102318190 102318190 C A BEX1 Nonsense_Mutation p.E5* 0.14 TCGA-CI-6621-01 X 128649686 128649686 T C SMARCA1 Missense_Mutation p.N203S 0.65 tolerated(0.65) benign(0.393) TCGA-CI-6621-01 X 129149113 129149113 C T BCORL1 Missense_Mutation p.R789C 0.09 probably_damaging(0.991) TCGA-CI-6621-01 X 144910425 144910425 C G TMEM257 3'UTR 0.08 TCGA-CI-6621-01 X 153218216 153218216 G A HCFC1 Missense_Mutation p.S1564F 0.59 deleterious_low_confidence(0.04) probably_damaging(0.974) TCGA-CI-6621-01 X 153699912 153699912 C T PLXNA3 Silent p.H1817H 0.70 TCGA-CI-6621-01 X 155227302 155227302 G A IL9R 5'UTR 0.24 TCGA-CI-6621-01 X 54578725 54578725 C T GNL3L Silent p.S394S 0.70 TCGA-CI-6621-01 X 6451807 6451807 C T VCX3A Missense_Mutation p.M180I 0.05 tolerated(0.58) unknown(0) TCGA-CI-6621-01 X 7175630 7175630 G C STS Splice_Site p.X133_splice 0.26 TCGA-CI-6621-01 X 78216827 78216827 G T P2RY10 Missense_Mutation p.K270N 0.68 deleterious(0.01) possibly_damaging(0.901) TCGA-CI-6621-01 X 78216828 78216828 G T P2RY10 Nonsense_Mutation p.E271* 0.68 TCGA-CI-6621-01 X 84562263 84562263 A C POF1B Missense_Mutation p.M357R 0.12 tolerated(0.07) benign(0.118) TCGA-CI-6621-01 Y 16734128 16734128 A T NLGN4Y Silent p.A43A 0.09 TCGA-CI-6622-01 10 51050074 51050074 G C PARG Missense_Mutation p.I336M 0.60 deleterious(0) probably_damaging(0.978) TCGA-CI-6622-01 10 89692911 89692911 G T PTEN Missense_Mutation p.G132V 0.48 deleterious(0) probably_damaging(0.998) TCGA-CI-6622-01 10 96796960 96796960 G A CYP2C8 Silent p.N466N 0.12 TCGA-CI-6622-01 11 114276496 114276496 C T RBM7 Missense_Mutation p.P138L 0.36 deleterious(0.02) possibly_damaging(0.642) TCGA-CI-6622-01 11 117105072 117105072 C T RNF214 Silent p.D28D 0.26 TCGA-CI-6622-01 11 122805387 122805387 C T C11orf63 Missense_Mutation p.S413L 0.38 tolerated(0.14) benign(0.009) TCGA-CI-6622-01 11 134201991 134201991 C T GLB1L2 Silent p.R12R 0.08 TCGA-CI-6622-01 11 4676665 4676665 C T OR51E1 3'UTR 0.41 TCGA-CI-6622-01 11 5080058 5080058 C T OR52E2 Missense_Mutation p.R267Q 0.33 tolerated(0.36) benign(0.03) TCGA-CI-6622-01 11 55563351 55563351 G T OR5D14 Missense_Mutation p.C107F 0.28 deleterious(0) possibly_damaging(0.759) TCGA-CI-6622-01 11 61039219 61039219 G A VWCE Silent p.D571D 0.38 TCGA-CI-6622-01 11 62299723 62299723 C T AHNAK Silent p.L722L 0.25 TCGA-CI-6622-01 11 65319023 65319023 T C LTBP3 Missense_Mutation p.D515G 0.23 tolerated(0.36) benign(0.055) TCGA-CI-6622-01 11 66083290 66083290 C T CD248 Silent p.P403P 0.23 TCGA-CI-6622-01 11 71726901 71726901 G A NUMA1 Missense_Mutation p.R550C 0.30 benign(0.008) TCGA-CI-6622-01 11 89444624 89444624 A G TRIM77 Missense_Mutation p.K153R 0.30 tolerated(0.11) benign(0.004) TCGA-CI-6622-01 12 21445214 21445214 C T SLCO1A2 Silent p.G498G 0.09 TCGA-CI-6622-01 12 25398283 25398284 - CCAGCT KRAS In_Frame_Ins p.A11_G12dup 0.21 TCGA-CI-6622-01 12 53873204 53873204 C T PCBP2 Missense_Mutation p.T360M 0.29 tolerated(0.19) benign(0.011) TCGA-CI-6622-01 12 54686634 54686634 G T NFE2 Missense_Mutation p.P216T 0.27 tolerated(0.3) benign(0.033) TCGA-CI-6622-01 12 5672617 5672617 C A ANO2 Nonsense_Mutation p.E949* 0.35 TCGA-CI-6622-01 12 58121196 58121196 G A AGAP2-AS1 Missense_Mutation p.A141T 0.25 possibly_damaging(0.695) TCGA-CI-6622-01 12 76454036 76454036 C T NAP1L1 Missense_Mutation p.R77Q 0.36 deleterious(0.04) possibly_damaging(0.805) TCGA-CI-6622-01 12 85277598 85277598 T C SLC6A15 Intron 0.28 TCGA-CI-6622-01 12 98926744 98926744 G A TMPO Missense_Mutation p.E237K 0.10 deleterious_low_confidence(0) probably_damaging(0.981) TCGA-CI-6622-01 13 25831346 25831346 G T MTMR6 Silent p.I361I 0.13 TCGA-CI-6622-01 13 39450508 39450508 C T FREM2 Nonsense_Mutation p.R2845* 0.09 TCGA-CI-6622-01 13 53036690 53036690 C A CKAP2 Missense_Mutation p.N432K 0.33 tolerated(0.15) benign(0.04) TCGA-CI-6622-01 13 96622400 96622400 G A UGGT2 Missense_Mutation p.T434I 0.39 deleterious(0.05) benign(0.005) TCGA-CI-6622-01 13 99037927 99037927 A G FARP1 Silent p.Q206Q 0.16 TCGA-CI-6622-01 14 76964844 76964844 C T ESRRB Intron 0.40 TCGA-CI-6622-01 15 26812851 26812851 G A GABRB3 Missense_Mutation p.R238W 0.29 tolerated(0.08) probably_damaging(0.916) TCGA-CI-6622-01 15 50264940 50264940 C T ATP8B4 Missense_Mutation p.R361Q 0.32 tolerated(0.35) benign(0.011) TCGA-CI-6622-01 15 52186041 52186041 G A TMOD3 Missense_Mutation p.V176I 0.26 tolerated(0.24) benign(0.001) TCGA-CI-6622-01 15 52681443 52681443 C A MYO5A Missense_Mutation p.A554S 0.28 deleterious(0.02) probably_damaging(0.932) TCGA-CI-6622-01 15 72559093 72559093 C G PARP6 Missense_Mutation p.G25A 0.38 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-CI-6622-01 15 85478562 85478562 C T SLC28A1 Missense_Mutation p.S465F 0.28 deleterious(0.01) benign(0.132) TCGA-CI-6622-01 16 1263892 1263892 C T CACNA1H Silent p.N1630N 0.42 TCGA-CI-6622-01 16 57144699 57144699 C T CPNE2 Silent p.A15A 0.13 TCGA-CI-6622-01 16 70900117 70900117 T C HYDIN Missense_Mutation p.D3809G 0.12 benign(0.012) TCGA-CI-6622-01 16 77465417 77465417 C T ADAMTS18 Silent p.A90A 0.33 TCGA-CI-6622-01 16 86613603 86613603 G A FOXL1 3'UTR 0.32 TCGA-CI-6622-01 16 904543 904543 C T LMF1 Missense_Mutation p.G565R 0.30 tolerated_low_confidence(0.16) benign(0.002) TCGA-CI-6622-01 17 41598148 41598148 A G DHX8 Silent p.L989L 0.09 TCGA-CI-6622-01 17 41599474 41599474 G A DHX8 Missense_Mutation p.C1108Y 0.37 deleterious(0) probably_damaging(0.985) TCGA-CI-6622-01 17 61613275 61613275 C T KCNH6 Silent p.N449N 0.21 TCGA-CI-6622-01 17 70120229 70120229 C T SOX9 Nonsense_Mutation p.Q411* 0.27 TCGA-CI-6622-01 18 19080103 19080103 C T GREB1L Missense_Mutation p.R1269W 0.43 deleterious(0.01) probably_damaging(1) TCGA-CI-6622-01 18 33048591 33048591 G A INO80C Missense_Mutation p.T224M 0.40 deleterious(0) probably_damaging(0.932) TCGA-CI-6622-01 18 5410565 5410565 C T EPB41L3 Silent p.E707E 0.57 TCGA-CI-6622-01 18 70526174 70526174 C T NETO1 Missense_Mutation p.G119E 0.59 deleterious(0) probably_damaging(1) TCGA-CI-6622-01 19 10753976 10753976 A G SLC44A2 Missense_Mutation p.D679G 0.15 deleterious(0) probably_damaging(0.956) TCGA-CI-6622-01 19 15121876 15121876 G T CCDC105 Missense_Mutation p.G80V 0.25 tolerated(0.05) probably_damaging(0.964) TCGA-CI-6622-01 19 36219737 36219737 A G KMT2B Missense_Mutation p.Q1545R 0.12 possibly_damaging(0.775) TCGA-CI-6622-01 19 43702283 43702283 C A PSG4 Missense_Mutation p.R192M 0.45 deleterious(0) probably_damaging(0.976) TCGA-CI-6622-01 19 464316 464316 G A ODF3L2 Missense_Mutation p.P133L 0.32 tolerated(0.11) benign(0.42) TCGA-CI-6622-01 19 50302695 50302695 C T AP2A1 Silent p.S359S 0.21 TCGA-CI-6622-01 19 55144588 55144588 G A LILRB1 Silent p.E360E 0.13 TCGA-CI-6622-01 19 55814754 55814754 C A BRSK1 Missense_Mutation p.D368E 0.39 tolerated(0.25) benign(0.417) TCGA-CI-6622-01 19 58469998 58469998 G T C19orf18 Nonsense_Mutation p.S207* 0.29 TCGA-CI-6622-01 19 6182935 6182935 G T ACSBG2 Missense_Mutation p.K360N 0.33 tolerated(0.34) possibly_damaging(0.601) TCGA-CI-6622-01 1 107599535 107599535 C T PRMT6 Silent p.R66R 0.23 TCGA-CI-6622-01 1 12065898 12065898 G A MFN2 Silent p.E542E 0.54 TCGA-CI-6622-01 1 171254818 171254818 C T FMO1 3'UTR 0.14 TCGA-CI-6622-01 1 171481224 171481224 C T PRRC2C 5'UTR 0.43 TCGA-CI-6622-01 1 186901975 186901975 C T PLA2G4A Silent p.Y213Y 0.27 TCGA-CI-6622-01 1 1920001 1920001 G A C1orf222 Silent p.S73S 0.36 TCGA-CI-6622-01 1 216108060 216108060 C T USH2A Missense_Mutation p.D2400N 0.22 benign(0.001) TCGA-CI-6622-01 1 237433800 237433800 G A RYR2 Missense_Mutation p.D18N 0.29 probably_damaging(0.945) TCGA-CI-6622-01 1 33248085 33248085 A G YARS Missense_Mutation p.L321P 0.12 deleterious(0) probably_damaging(0.998) TCGA-CI-6622-01 1 42046815 42046815 C T HIVEP3 Silent p.R1218R 0.32 TCGA-CI-6622-01 1 67838461 67838461 T C IL12RB2 Missense_Mutation p.L571P 0.11 deleterious(0) possibly_damaging(0.898) TCGA-CI-6622-01 1 89616037 89616037 C G GBP7 Missense_Mutation p.E283Q 0.19 tolerated(0.14) possibly_damaging(0.461) TCGA-CI-6622-01 1 9165567 9165567 G A GPR157 Missense_Mutation p.T257M 0.48 tolerated(0.19) benign(0.013) TCGA-CI-6622-01 1 92546113 92546113 C G BTBD8 5'UTR 0.32 TCGA-CI-6622-01 20 35748189 35748189 C T MROH8 Missense_Mutation p.R788H 0.41 deleterious(0.02) benign(0.187) TCGA-CI-6622-01 20 37377454 37377454 G C ACTR5 Missense_Mutation p.L111F 0.27 tolerated(0.17) probably_damaging(1) TCGA-CI-6622-01 20 42157978 42157978 G A L3MBTL1 Silent p.P320P 0.13 TCGA-CI-6622-01 20 57428368 57428368 C T GNAS Silent p.R16R 0.14 TCGA-CI-6622-01 20 60639550 60639550 C A TAF4 Silent p.P439P 0.44 TCGA-CI-6622-01 21 28338138 28338138 G A ADAMTS5 Silent p.H191H 0.38 TCGA-CI-6622-01 21 31971163 31971163 C T KRTAP6-2 Missense_Mutation p.G11S 0.33 unknown(0) TCGA-CI-6622-01 21 38877658 38877658 C T DYRK1A Missense_Mutation p.R438C 0.21 deleterious(0) probably_damaging(0.998) TCGA-CI-6622-01 21 43411346 43411346 C A ZBTB21 Missense_Mutation p.W953C 0.32 deleterious(0.02) probably_damaging(1) TCGA-CI-6622-01 22 17990860 17990860 C T CECR2 Missense_Mutation p.R255C 0.40 deleterious(0) possibly_damaging(0.782) TCGA-CI-6622-01 22 51160203 51160203 C T SHANK3 Silent p.A1330A 0.22 TCGA-CI-6622-01 2 103059685 103059685 A G IL18RAP Silent p.K274K 0.12 TCGA-CI-6622-01 2 103378756 103378756 C T TMEM182 Missense_Mutation p.S27L 0.32 deleterious(0) probably_damaging(0.968) TCGA-CI-6622-01 2 179470014 179470014 T A TTN Missense_Mutation p.T17964S 0.38 TCGA-CI-6622-01 2 179594277 179594277 G T TTN Silent p.I6202I 0.42 TCGA-CI-6622-01 2 207174442 207174442 G A ZDBF2 Silent p.S1730S 0.20 TCGA-CI-6622-01 2 238006402 238006402 C T COPS8 3'UTR 0.31 TCGA-CI-6622-01 2 24413543 24413543 G A FAM228A 3'UTR 0.30 TCGA-CI-6622-01 2 33952673 33952673 C T AC009499.1 Intron 0.48 TCGA-CI-6622-01 2 39213357 39213357 T C SOS1 Missense_Mutation p.I1204V 0.38 tolerated_low_confidence(1) benign(0) TCGA-CI-6622-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.46 deleterious(0.01) probably_damaging(0.964) TCGA-CI-6622-01 3 108698418 108698418 C T MORC1 Silent p.A807A 0.20 TCGA-CI-6622-01 3 127441376 127441376 A G MGLL Missense_Mutation p.V99A 0.08 tolerated(0.81) benign(0.039) TCGA-CI-6622-01 3 147108987 147108987 G A ZIC4 Silent p.F295F 0.24 TCGA-CI-6622-01 3 154146598 154146598 C T GPR149 Silent p.P269P 0.43 TCGA-CI-6622-01 3 178916930 178916930 G T PIK3CA Missense_Mutation p.G106V 0.29 deleterious(0.01) probably_damaging(1) TCGA-CI-6622-01 3 36779797 36779797 G A DCLK3 Silent p.H118H 0.33 TCGA-CI-6622-01 3 42728220 42728220 C T KLHL40 Silent p.N370N 0.29 TCGA-CI-6622-01 3 52097214 52097214 C T LINC00696 Silent p.A118A 0.40 TCGA-CI-6622-01 3 9730689 9730689 T C MTMR14 Silent p.S452S 0.29 TCGA-CI-6622-01 4 129012668 129012668 G A LARP1B Splice_Site p.X223_splice 0.26 TCGA-CI-6622-01 4 151336641 151336641 T C LRBA Silent p.E2392E 0.49 TCGA-CI-6622-01 4 37847343 37847343 G A PGM2 Silent p.K333K 0.14 TCGA-CI-6622-01 4 48577189 48577189 C T FRYL Missense_Mutation p.E931K 0.28 deleterious(0) benign(0.063) TCGA-CI-6622-01 4 48901894 48901894 T A OCIAD2 Missense_Mutation p.I39F 0.33 tolerated(0.08) possibly_damaging(0.838) TCGA-CI-6622-01 4 81207710 81207711 - TT FGF5 Frame_Shift_Ins p.T232Lfs*29 0.28 TCGA-CI-6622-01 5 102432330 102432330 G T GIN1 Silent p.V403V 0.33 TCGA-CI-6622-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.31 TCGA-CI-6622-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.42 TCGA-CI-6622-01 5 1216984 1216984 G A SLC6A19 Missense_Mutation p.R366Q 0.23 tolerated(0.29) benign(0.001) TCGA-CI-6622-01 5 127648333 127648333 G T FBN2 Silent p.V1624V 0.22 TCGA-CI-6622-01 5 130769267 130769267 C T RAPGEF6 Missense_Mutation p.S1285N 0.28 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-CI-6622-01 5 140228508 140228508 C T PCDHA9 Missense_Mutation p.A143V 0.19 tolerated_low_confidence(0.18) possibly_damaging(0.61) TCGA-CI-6622-01 5 140237091 140237091 C T PCDHA10 Silent p.N486N 0.30 TCGA-CI-6622-01 5 148679892 148679892 C T AFAP1L1 Silent p.F68F 0.31 TCGA-CI-6622-01 5 176002350 176002350 G A CDHR2 Missense_Mutation p.V231M 0.34 deleterious(0) probably_damaging(0.974) TCGA-CI-6622-01 5 176295878 176295878 C T UNC5A Missense_Mutation p.R212C 0.29 deleterious(0) probably_damaging(0.998) TCGA-CI-6622-01 5 43704485 43704485 T A NNT Silent p.V1080V 0.29 TCGA-CI-6622-01 5 90072330 90072330 C T GPR98 Missense_Mutation p.P4155L 0.34 probably_damaging(0.913) TCGA-CI-6622-01 6 138599710 138599710 G A KIAA1244 Missense_Mutation p.G751S 0.25 tolerated(0.93) benign(0.003) TCGA-CI-6622-01 6 138640982 138640982 G A KIAA1244 Silent p.L1539L 0.25 TCGA-CI-6622-01 6 166952224 166952224 C T RPS6KA2 Missense_Mutation p.G58S 0.29 deleterious(0.04) possibly_damaging(0.786) TCGA-CI-6622-01 6 37140933 37140933 C T PIM1 Nonsense_Mutation p.Q257* 0.36 TCGA-CI-6622-01 6 47869516 47869516 C T PTCHD4 Intron 0.33 TCGA-CI-6622-01 7 100352869 100352869 C T ZAN Missense_Mutation p.R1049C 0.58 unknown(0) TCGA-CI-6622-01 7 107115419 107115419 G A GPR22 Missense_Mutation p.R305Q 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-CI-6622-01 7 122303293 122303293 G C CADPS2 Missense_Mutation p.Q262E 0.45 deleterious(0.01) benign(0.354) TCGA-CI-6622-01 7 138732534 138732534 C T ZC3HAV1 Missense_Mutation p.V839I 0.28 deleterious(0.05) benign(0) TCGA-CI-6622-01 7 143748302 143748302 C A OR2A5 Missense_Mutation p.Q270K 0.30 tolerated(0.09) possibly_damaging(0.844) TCGA-CI-6622-01 7 19156558 19156558 G A TWIST1 Silent p.A129A 0.31 TCGA-CI-6622-01 7 44185154 44185154 C T GCK Missense_Mutation p.E400K 0.20 tolerated(0.09) benign(0.019) TCGA-CI-6622-01 7 4801867 4801867 G A FOXK1 Silent p.P658P 0.42 TCGA-CI-6622-01 7 62752440 62752440 C A ZNF733P RNA 0.32 TCGA-CI-6622-01 7 6620216 6620216 G C ZDHHC4 Missense_Mutation p.L8F 0.04 tolerated(0.06) possibly_damaging(0.695) TCGA-CI-6622-01 7 6844656 6844656 C T CCZ1B Missense_Mutation p.R340Q 0.34 tolerated(0.15) benign(0.118) TCGA-CI-6622-01 8 141566033 141566033 G A AGO2 Missense_Mutation p.R411W 0.19 deleterious(0) benign(0.42) TCGA-CI-6622-01 8 2823318 2823318 G A CSMD1 Missense_Mutation p.P3087S 0.25 benign(0) TCGA-CI-6622-01 8 2909983 2909983 C T CSMD1 Splice_Site p.X2554_splice 0.17 TCGA-CI-6622-01 8 37695392 37695392 C T GPR124 Missense_Mutation p.R732C 0.41 tolerated(0.18) possibly_damaging(0.846) TCGA-CI-6622-01 8 69017380 69017380 C T PREX2 Intron 0.36 TCGA-CI-6622-01 8 88885308 88885308 C A DCAF4L2 Missense_Mutation p.D298Y 0.20 deleterious(0) probably_damaging(1) TCGA-CI-6622-01 8 89128758 89128758 C T MMP16 Missense_Mutation p.R354H 0.34 deleterious(0) probably_damaging(0.999) TCGA-CI-6622-01 8 94746830 94746830 G A RBM12B Silent p.F603F 0.23 TCGA-CI-6622-01 9 131076170 131076170 T C TRUB2 Splice_Site p.X127_splice 0.09 TCGA-CI-6622-01 9 32493914 32493914 C T DDX58 Missense_Mutation p.E90K 0.24 tolerated(0.17) benign(0.098) TCGA-CI-6622-01 9 97873903 97873903 A G FANCC Missense_Mutation p.F391L 0.11 tolerated(0.08) benign(0.024) TCGA-CI-6622-01 X 154114452 154114452 C T F8 Intron 0.16 TCGA-CI-6622-01 X 5811131 5811131 G A NLGN4X Silent p.N726N 0.68 TCGA-CI-6622-01 X 63490911 63490911 C A MTMR8 Missense_Mutation p.Q508H 0.75 tolerated(1) benign(0.017) TCGA-CI-6623-01 10 27044639 27044639 A G ABI1 Silent p.P370P 0.09 TCGA-CI-6623-01 10 61718367 61718367 C T C10orf40 Silent p.R21R 0.09 TCGA-CI-6623-01 11 20139844 20139844 G A NAV2 3'UTR 0.40 TCGA-CI-6623-01 11 34478348 34478348 C G CAT Missense_Mutation p.P347R 0.28 deleterious(0) probably_damaging(1) TCGA-CI-6623-01 11 5537405 5537405 G T UBQLNL Silent p.G89G 0.24 TCGA-CI-6623-01 11 5799684 5799684 C T OR52N5 Missense_Mutation p.E61K 0.35 tolerated(0.37) benign(0.033) TCGA-CI-6623-01 12 23757409 23757409 C T SOX5 Missense_Mutation p.G359D 0.25 tolerated(0.13) possibly_damaging(0.783) TCGA-CI-6623-01 12 43777450 43777450 C A ADAMTS20 Missense_Mutation p.V1570F 0.28 tolerated(0.78) benign(0.001) TCGA-CI-6623-01 12 51589831 51589831 C T POU6F1 Silent p.A57A 0.29 TCGA-CI-6623-01 12 88478521 88478521 C G CEP290 Missense_Mutation p.E1516Q 0.59 probably_damaging(0.999) TCGA-CI-6623-01 13 108862504 108862504 C G LIG4 Missense_Mutation p.M371I 0.10 deleterious(0.03) benign(0.158) TCGA-CI-6623-01 13 78492479 78492479 G A EDNRB Missense_Mutation p.T167M 0.17 deleterious(0.04) benign(0.024) TCGA-CI-6623-01 13 84454945 84454945 T C SLITRK1 Missense_Mutation p.N233S 0.12 tolerated(0.97) benign(0.018) TCGA-CI-6623-01 14 101498368 101498368 C T MIR543 RNA 0.24 TCGA-CI-6623-01 14 102378915 102378915 G A PPP2R5C Intron 0.23 TCGA-CI-6623-01 14 23887511 23887511 G A MYH7 Silent p.R1359R 0.64 TCGA-CI-6623-01 15 20489496 20489496 G A CHEK2P2 Splice_Site 0.09 TCGA-CI-6623-01 15 74637448 74637448 T C CYP11A1 Missense_Mutation p.K188E 0.12 tolerated(0.24) benign(0.006) TCGA-CI-6623-01 15 75688686 75688686 A G SIN3A Missense_Mutation p.L669P 0.23 deleterious(0) possibly_damaging(0.774) TCGA-CI-6623-01 15 80181563 80181563 C A ST20-MTHFS Missense_Mutation p.R60L 0.37 tolerated(0.22) benign(0) TCGA-CI-6623-01 16 31091919 31091919 C T ZNF646 Missense_Mutation p.P1425L 0.25 tolerated(0.43) benign(0) TCGA-CI-6623-01 16 599778 599778 G A CAPN15 Missense_Mutation p.R669H 0.51 deleterious(0) probably_damaging(0.915) TCGA-CI-6623-01 17 10546017 10546017 C A MYH3 Silent p.L535L 0.28 TCGA-CI-6623-01 17 71196851 71196851 T C COG1 Missense_Mutation p.L406P 0.08 deleterious(0) probably_damaging(0.982) TCGA-CI-6623-01 17 72769719 72769719 T C NAT9 Silent p.A62A 0.09 TCGA-CI-6623-01 17 7578205 7578205 C A TP53 Missense_Mutation p.S215I 0.70 deleterious(0) probably_damaging(1) TCGA-CI-6623-01 18 23854787 23854787 C T TAF4B Missense_Mutation p.P253L 0.09 tolerated(0.06) possibly_damaging(0.449) TCGA-CI-6623-01 18 77221347 77221347 A G NFATC1 Missense_Mutation p.D634G 0.11 deleterious(0.03) benign(0.028) TCGA-CI-6623-01 19 36234998 36234998 G A U2AF1L4 Missense_Mutation p.R94C 0.12 deleterious(0.02) probably_damaging(0.997) TCGA-CI-6623-01 19 38187606 38187606 T C ZNF607 3'UTR 0.14 TCGA-CI-6623-01 19 40520952 40520952 G A ZNF546 Missense_Mutation p.R592H 0.38 tolerated(0.55) benign(0.383) TCGA-CI-6623-01 19 43382305 43382305 C T PSG1 Missense_Mutation p.G64S 0.22 deleterious(0.04) benign(0.148) TCGA-CI-6623-01 19 51840605 51840605 C T VSIG10L Missense_Mutation p.R731Q 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-CI-6623-01 19 54659380 54659380 T C LENG1 3'UTR 0.61 TCGA-CI-6623-01 19 58469977 58469977 T G C19orf18 Missense_Mutation p.D214A 0.19 deleterious(0.02) probably_damaging(0.932) TCGA-CI-6623-01 19 58868424 58868424 G A ZNF497 Missense_Mutation p.P193L 0.14 tolerated(0.06) benign(0.077) TCGA-CI-6623-01 19 8211023 8211023 C T FBN3 Missense_Mutation p.G113R 0.18 deleterious(0) possibly_damaging(0.456) TCGA-CI-6623-01 19 9087015 9087015 G T MUC16 Silent p.S1600S 0.19 TCGA-CI-6623-01 1 109801427 109801427 C T CELSR2 Silent p.D1228D 0.09 TCGA-CI-6623-01 1 110301990 110301990 C A EPS8L3 Missense_Mutation p.R92L 0.54 tolerated(0.07) probably_damaging(0.909) TCGA-CI-6623-01 1 147380335 147380335 G A GJA8 Missense_Mutation p.V85I 0.12 deleterious(0.04) benign(0.355) TCGA-CI-6623-01 1 152281685 152281685 C T FLG Missense_Mutation p.D1893N 0.35 possibly_damaging(0.831) TCGA-CI-6623-01 1 23697415 23697417 AGG - C1orf213 3'UTR 0.26 TCGA-CI-6623-01 1 244219984 244219984 C T ZBTB18 3'UTR 0.10 TCGA-CI-6623-01 1 245865900 245865900 C T KIF26B Missense_Mutation p.R2107C 0.28 deleterious_low_confidence(0.02) unknown(0) TCGA-CI-6623-01 20 44506374 44506374 G A ZSWIM3 Missense_Mutation p.D393N 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-CI-6623-01 20 55748250 55748250 A T BMP7 Intron 0.08 TCGA-CI-6623-01 21 16337978 16337978 G C NRIP1 Missense_Mutation p.L846V 0.23 tolerated(0.4) benign(0.002) TCGA-CI-6623-01 21 43711661 43711661 G A ABCG1 Silent p.P528P 0.18 TCGA-CI-6623-01 22 16287532 16287532 G T POTEH Silent p.G118G 0.14 TCGA-CI-6623-01 22 44553872 44553872 G A PARVB Missense_Mutation p.G318D 0.10 deleterious(0) probably_damaging(0.998) TCGA-CI-6623-01 22 50717293 50717293 C T PLXNB2 Missense_Mutation p.V1513M 0.40 deleterious(0.05) possibly_damaging(0.791) TCGA-CI-6623-01 2 125204343 125204343 G A CNTNAP5 Silent p.A249A 0.28 TCGA-CI-6623-01 2 125367407 125367407 A G CNTNAP5 Missense_Mutation p.R595G 0.15 deleterious(0.01) possibly_damaging(0.786) TCGA-CI-6623-01 2 164467070 164467070 C T FIGN Silent p.S424S 0.47 TCGA-CI-6623-01 2 170135899 170135899 G A LRP2 Silent p.A516A 0.23 TCGA-CI-6623-01 2 179433318 179433318 G A TTN Silent p.T25847T 0.30 TCGA-CI-6623-01 2 220330847 220330847 C T SPEG Intron 0.61 TCGA-CI-6623-01 2 32667449 32667449 C T BIRC6 Silent p.I1388I 0.24 TCGA-CI-6623-01 2 71891540 71891540 C T DYSF Missense_Mutation p.R1716C 0.12 tolerated(0.24) benign(0.002) TCGA-CI-6623-01 2 73675879 73675879 A T ALMS1 Missense_Mutation p.K741I 0.51 benign(0.004) TCGA-CI-6623-01 2 98797674 98797674 C T VWA3B Missense_Mutation p.A437V 0.18 deleterious(0) probably_damaging(0.932) TCGA-CI-6623-01 3 119276645 119276645 A T CD80 5'UTR 0.30 TCGA-CI-6623-01 3 129302452 129302452 A G PLXND1 Silent p.C733C 0.18 TCGA-CI-6623-01 3 14555835 14555835 G A GRIP2 RNA 0.35 TCGA-CI-6623-01 3 157817714 157817714 G C SHOX2 Missense_Mutation p.Q237E 0.25 tolerated(0.14) probably_damaging(0.92) TCGA-CI-6623-01 3 178545966 178545966 C T KCNMB2 Silent p.S76S 0.30 TCGA-CI-6623-01 3 178546004 178546004 C T KCNMB2 Missense_Mutation p.A89V 0.09 tolerated(0.12) possibly_damaging(0.542) TCGA-CI-6623-01 3 51101981 51101981 C T DOCK3 Missense_Mutation p.R140W 0.14 tolerated(0.05) probably_damaging(0.983) TCGA-CI-6623-01 3 62739326 62739326 G A CADPS Silent p.D226D 0.31 TCGA-CI-6623-01 4 188924294 188924294 C T ZFP42 Silent p.F111F 0.41 TCGA-CI-6623-01 4 5448496 5448496 G A STK32B Missense_Mutation p.R220Q 0.52 deleterious(0.01) benign(0.093) TCGA-CI-6623-01 4 74365757 74365757 G A AFM Missense_Mutation p.E487K 0.16 tolerated(0.46) benign(0.038) TCGA-CI-6623-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.28 TCGA-CI-6623-01 5 112175221 112175221 G - APC Frame_Shift_Del p.I1311Lfs*10 0.28 TCGA-CI-6623-01 5 140188326 140188326 C T PCDHA4 Silent p.Y518Y 0.47 TCGA-CI-6623-01 5 140725890 140725890 C T PCDHGA3 Missense_Mutation p.R764W 0.09 deleterious_low_confidence(0) benign(0.251) TCGA-CI-6623-01 5 169469104 169469104 G A DOCK2 Missense_Mutation p.E1282K 0.24 tolerated(0.38) benign(0.002) TCGA-CI-6623-01 5 32061223 32061223 C T PDZD2 Missense_Mutation p.R812W 0.17 deleterious(0) probably_damaging(1) TCGA-CI-6623-01 5 3599492 3599492 G T IRX1 Missense_Mutation p.A144S 0.36 deleterious(0) probably_damaging(0.935) TCGA-CI-6623-01 6 117114049 117114049 C A GPRC6A Silent p.T679T 0.32 TCGA-CI-6623-01 6 127768193 127768193 T - KIAA0408 Frame_Shift_Del p.N424Ifs*97 0.24 TCGA-CI-6623-01 6 135732646 135732646 T C AHI1 Missense_Mutation p.N934S 0.26 tolerated(1) benign(0.01) TCGA-CI-6623-01 6 148865131 148865131 A G SASH1 Missense_Mutation p.D842G 0.25 deleterious_low_confidence(0.02) benign(0.005) TCGA-CI-6623-01 6 148865132 148865132 C G SASH1 Missense_Mutation p.D842E 0.24 deleterious_low_confidence(0) benign(0.248) TCGA-CI-6623-01 6 148865133 148865133 C T SASH1 Missense_Mutation p.L843F 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-CI-6623-01 6 30229393 30229393 G A HCG17 Intron 0.42 TCGA-CI-6623-01 6 43152186 43152186 G A CUL9 Silent p.K46K 0.23 TCGA-CI-6623-01 6 49754897 49754897 A G PGK2 Missense_Mutation p.S2P 0.10 deleterious(0) unknown(0) TCGA-CI-6623-01 6 71234939 71234939 C G FAM135A Missense_Mutation p.Q718E 0.12 tolerated(0.16) benign(0.196) TCGA-CI-6623-01 7 62752712 62752712 G C ZNF733P RNA 0.08 TCGA-CI-6623-01 7 72849986 72849986 C - FZD9 Frame_Shift_Del p.R551Gfs*28 0.34 TCGA-CI-6623-01 7 94293707 94293707 G A PEG10 Missense_Mutation p.R280H 0.13 tolerated(0.09) probably_damaging(0.935) TCGA-CI-6623-01 8 106814943 106814943 C T ZFPM2 Missense_Mutation p.P878L 0.19 deleterious(0) probably_damaging(0.976) TCGA-CI-6623-01 8 12882486 12882486 C T KIAA1456 3'UTR 0.14 TCGA-CI-6623-01 8 144874934 144874934 G - SCRIB Frame_Shift_Del p.P1374Lfs*133 0.22 TCGA-CI-6623-01 8 53569919 53569919 T C RB1CC1 Missense_Mutation p.T824A 0.15 tolerated_low_confidence(0.45) benign(0.004) TCGA-CI-6623-01 8 55541040 55541040 C A RP1 Missense_Mutation p.A1533E 0.54 tolerated(0.12) benign(0.02) TCGA-CI-6623-01 8 97797211 97797211 C A CPQ Missense_Mutation p.S29Y 0.12 tolerated(0.06) benign(0.008) TCGA-CI-6623-01 9 103066085 103066085 G A TEX10 Silent p.L835L 0.25 TCGA-CI-6623-01 9 130996373 130996373 G A DNM1 Missense_Mutation p.R470H 0.28 tolerated(0.11) possibly_damaging(0.773) TCGA-CI-6623-01 9 2718915 2718915 C T KCNV2 Silent p.R392R 0.21 TCGA-CI-6623-01 9 33797945 33797945 G A PRSS3 Missense_Mutation p.D164N 0.16 deleterious(0.02) probably_damaging(0.988) TCGA-CI-6623-01 X 101970394 101970394 G A GPRASP2 Silent p.G199G 0.25 TCGA-CI-6623-01 X 3261861 3261861 G A MXRA5 Missense_Mutation p.A5V 0.77 tolerated(0.16) benign(0.019) TCGA-CI-6623-01 X 5811268 5811268 C T NLGN4X Missense_Mutation p.V681I 0.57 tolerated(0.16) possibly_damaging(0.897) TCGA-CI-6623-01 X 63409913 63409913 G A AMER1 Missense_Mutation p.P1085L 0.11 deleterious(0.05) benign(0.014) TCGA-CI-6623-01 X 72224890 72224890 C T PABPC1L2B 3'UTR 0.40 TCGA-CI-6623-01 X 72297817 72297817 G A PABPC1L2A 3'UTR 0.36 TCGA-CI-6624-01 10 104865521 104865521 T G NT5C2 Missense_Mutation p.K111Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-CI-6624-01 10 118196356 118196356 A C PNLIPRP3 Silent p.I61I 0.09 TCGA-CI-6624-01 10 120790748 120790748 C A NANOS1 3'UTR 0.17 TCGA-CI-6624-01 10 12856299 12856299 C T CAMK1D Silent p.S249S 0.32 TCGA-CI-6624-01 10 129905967 129905967 T A MKI67 Missense_Mutation p.E1379D 0.16 tolerated(0.15) benign(0.007) TCGA-CI-6624-01 10 45499179 45499179 A G ZNF22 Silent p.K121K 0.27 TCGA-CI-6624-01 10 58118377 58118377 A G ZWINT Silent p.T244T 0.17 TCGA-CI-6624-01 10 7318857 7318857 A C SFMBT2 Missense_Mutation p.F289L 0.35 deleterious(0) probably_damaging(0.973) TCGA-CI-6624-01 10 88703039 88703039 A T MMRN2 Missense_Mutation p.L501Q 0.22 deleterious(0.03) possibly_damaging(0.736) TCGA-CI-6624-01 11 101325766 101325766 G C TRPC6 Missense_Mutation p.P851A 0.07 tolerated(0.58) benign(0.101) TCGA-CI-6624-01 11 102207829 102207829 C A BIRC3 Nonsense_Mutation p.S604* 0.14 TCGA-CI-6624-01 11 107219711 107219711 G T CWF19L2 Missense_Mutation p.H718Q 0.21 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 11 111407386 111407386 C A C11orf88 Intron 0.19 TCGA-CI-6624-01 11 111558815 111558815 G A SIK2 Missense_Mutation p.R136Q 0.19 tolerated(0.07) probably_damaging(0.912) TCGA-CI-6624-01 11 113073102 113073102 T G NCAM1 Silent p.V77V 0.14 TCGA-CI-6624-01 11 114453431 114453431 A C NXPE4 Missense_Mutation p.F137V 0.12 deleterious(0.02) probably_damaging(1) TCGA-CI-6624-01 11 117278743 117278743 G A CEP164 Missense_Mutation p.E1202K 0.12 deleterious(0) probably_damaging(0.928) TCGA-CI-6624-01 11 119216755 119216755 C T MFRP Splice_Site p.X91_splice 0.12 TCGA-CI-6624-01 11 14853310 14853310 G C PDE3B Missense_Mutation p.R694T 0.15 tolerated(0.07) possibly_damaging(0.786) TCGA-CI-6624-01 11 32956633 32956633 G C QSER1 Missense_Mutation p.G1148R 0.13 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 11 44286517 44286517 G A ALX4 Missense_Mutation p.P375S 0.18 tolerated(0.08) probably_damaging(0.992) TCGA-CI-6624-01 11 44331407 44331407 C T ALX4 Missense_Mutation p.G69E 0.13 tolerated_low_confidence(1) benign(0.003) TCGA-CI-6624-01 11 5344652 5344652 G C OR51B2 Missense_Mutation p.I292M 0.32 deleterious(0.05) benign(0.05) TCGA-CI-6624-01 11 55135901 55135901 T G OR4A15 Missense_Mutation p.F181C 0.12 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-CI-6624-01 11 55541198 55541198 T A OR5D13 Silent p.S95S 0.17 TCGA-CI-6624-01 11 56409290 56409290 G A OR5AP2 Missense_Mutation p.S209L 0.24 tolerated(0.21) possibly_damaging(0.731) TCGA-CI-6624-01 11 57946987 57946987 C A OR9Q1 Missense_Mutation p.A24E 0.11 tolerated(0.21) benign(0.01) TCGA-CI-6624-01 11 6220833 6220833 G A OR52W1 Missense_Mutation p.R127H 0.42 deleterious(0.01) possibly_damaging(0.635) TCGA-CI-6624-01 11 64807164 64807164 C T SNX15 Missense_Mutation p.P310L 0.22 deleterious(0) probably_damaging(0.999) TCGA-CI-6624-01 11 66478110 66478110 C T SPTBN2 Missense_Mutation p.G339E 0.25 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 11 68331813 68331813 T C PPP6R3 Silent p.H296H 0.21 TCGA-CI-6624-01 11 6977230 6977230 T G ZNF215 Missense_Mutation p.F341C 0.21 deleterious(0) possibly_damaging(0.707) TCGA-CI-6624-01 11 73007692 73007692 G A P2RY6 Silent p.L43L 0.16 TCGA-CI-6624-01 11 75563045 75563045 G T UVRAG Nonsense_Mutation p.E79* 0.09 TCGA-CI-6624-01 11 9168658 9168658 C T DENND5A Missense_Mutation p.E926K 0.23 deleterious(0) possibly_damaging(0.775) TCGA-CI-6624-01 11 92086824 92086824 T A FAT3 Missense_Mutation p.L516M 0.13 benign(0.027) TCGA-CI-6624-01 12 10562102 10562102 T G KLRC4 Missense_Mutation p.K25Q 0.16 deleterious(0) probably_damaging(0.991) TCGA-CI-6624-01 12 108641832 108641832 G C WSCD2 Missense_Mutation p.K470N 0.13 deleterious(0.03) benign(0.009) TCGA-CI-6624-01 12 112516491 112516491 C T NAA25 Missense_Mutation p.E178K 0.20 deleterious(0.02) benign(0.128) TCGA-CI-6624-01 12 11286425 11286425 A T TAS2R30 Nonsense_Mutation p.L140* 0.33 TCGA-CI-6624-01 12 124398918 124398918 G A DNAH10 Silent p.K3347K 0.17 TCGA-CI-6624-01 12 129299456 129299456 C T SLC15A4 Missense_Mutation p.A236T 0.19 deleterious(0) possibly_damaging(0.644) TCGA-CI-6624-01 12 1987537 1987537 C T CACNA2D4 Missense_Mutation p.A555T 0.16 deleterious(0) possibly_damaging(0.861) TCGA-CI-6624-01 12 21788373 21788373 A C LDHB 3'UTR 0.22 TCGA-CI-6624-01 12 32134982 32134982 G C KIAA1551 Missense_Mutation p.A365P 0.11 tolerated(0.23) benign(0.013) TCGA-CI-6624-01 12 3939084 3939084 G T PARP11 Missense_Mutation p.A40E 0.22 tolerated(1) possibly_damaging(0.833) TCGA-CI-6624-01 12 40925966 40925966 A G MUC19 Intron 0.13 TCGA-CI-6624-01 12 45001003 45001003 C T NELL2 Missense_Mutation p.A588T 0.16 deleterious(0) benign(0.058) TCGA-CI-6624-01 12 54857019 54857041 AGGAACCTGGTGGCGAGCATTGA - GTSF1 Frame_Shift_Del p.F53Sfs*3 0.19 TCGA-CI-6624-01 12 60168872 60168872 A T SLC16A7 Missense_Mutation p.I266L 0.15 deleterious(0.04) benign(0.044) TCGA-CI-6624-01 12 63954218 63954218 T C DPY19L2 3'UTR 0.36 TCGA-CI-6624-01 12 85450320 85450320 A G LRRIQ1 Missense_Mutation p.I583M 0.17 tolerated(0.19) benign(0.013) TCGA-CI-6624-01 12 9243952 9243952 G T A2M Missense_Mutation p.L772M 0.15 tolerated(0.08) possibly_damaging(0.474) TCGA-CI-6624-01 13 111077128 111077128 A C COL4A2 Silent p.G76G 0.20 TCGA-CI-6624-01 13 113974755 113974755 C T LAMP1 Silent p.G282G 0.20 TCGA-CI-6624-01 13 21006393 21006393 G A CRYL1 Missense_Mutation p.H161Y 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-CI-6624-01 13 28601271 28601271 G T FLT3 Missense_Mutation p.H721N 0.10 tolerated(0.28) probably_damaging(0.95) TCGA-CI-6624-01 13 29600215 29600215 C A MTUS2 Silent p.G470G 0.11 TCGA-CI-6624-01 13 32911778 32911778 G A BRCA2 Missense_Mutation p.D1096N 0.10 deleterious(0.04) benign(0.149) TCGA-CI-6624-01 13 32911780 32911780 T G BRCA2 Missense_Mutation p.D1096E 0.11 deleterious(0.01) possibly_damaging(0.607) TCGA-CI-6624-01 13 38266198 38266198 T A TRPC4 Missense_Mutation p.D391V 0.08 tolerated(0.16) benign(0.283) TCGA-CI-6624-01 13 41704525 41704525 T A KBTBD6 3'UTR 0.10 TCGA-CI-6624-01 13 42882668 42882668 C A AKAP11 Missense_Mutation p.S1732R 0.11 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 13 58298928 58298928 G A PCDH17 Missense_Mutation p.G994R 0.12 deleterious(0.05) possibly_damaging(0.573) TCGA-CI-6624-01 13 60584697 60584697 G A DIAPH3 Missense_Mutation p.S293F 0.09 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 13 88328396 88328396 C A SLITRK5 Missense_Mutation p.D251E 0.10 tolerated(1) benign(0.006) TCGA-CI-6624-01 13 95112465 95112465 C A DCT Silent p.G353G 0.13 TCGA-CI-6624-01 14 102798146 102798146 A T ZNF839 Missense_Mutation p.E460V 0.25 tolerated(0.27) benign(0.002) TCGA-CI-6624-01 14 106306936 106306936 C T IGHD Missense_Mutation p.G298D 0.09 tolerated(0.37) benign(0.09) TCGA-CI-6624-01 14 38680040 38680040 T A SSTR1 3'UTR 0.20 TCGA-CI-6624-01 14 55433308 55433308 G A WDHD1 Missense_Mutation p.S732L 0.13 tolerated(0.06) probably_damaging(0.937) TCGA-CI-6624-01 14 76150021 76150021 T G TTLL5 Intron 0.20 TCGA-CI-6624-01 15 102249040 102249040 C T TARSL2 Missense_Mutation p.E296K 0.13 deleterious(0) benign(0.271) TCGA-CI-6624-01 15 23890617 23890617 G A MAGEL2 Missense_Mutation p.A155V 0.17 deleterious_low_confidence(0) possibly_damaging(0.449) TCGA-CI-6624-01 15 28422162 28422162 G A HERC2 Silent p.T3122T 0.30 TCGA-CI-6624-01 15 34134166 34134166 A T RYR3 Missense_Mutation p.K4380M 0.12 benign(0.142) TCGA-CI-6624-01 15 35148894 35148894 A T AQR 3'UTR 0.26 TCGA-CI-6624-01 15 54307060 54307060 C G UNC13C Missense_Mutation p.L654V 0.15 deleterious_low_confidence(0) benign(0.069) TCGA-CI-6624-01 15 64041865 64041865 A G HERC1 Silent p.H676H 0.13 TCGA-CI-6624-01 15 76075499 76075499 C T RN7SL319P 5'Flank 0.15 TCGA-CI-6624-01 15 77134175 77134175 A C SCAPER Missense_Mutation p.L98R 0.13 deleterious(0) probably_damaging(0.91) TCGA-CI-6624-01 15 85159681 85159681 T C ZSCAN2 Intron 0.19 TCGA-CI-6624-01 15 86814931 86814931 A G AGBL1 Missense_Mutation p.Y644C 0.11 deleterious(0) probably_damaging(0.982) TCGA-CI-6624-01 16 20497979 20497979 C T ACSM2A Silent p.S571S 0.07 TCGA-CI-6624-01 16 30616166 30616166 G A ZNF689 Nonsense_Mutation p.Q308* 0.12 TCGA-CI-6624-01 16 4433388 4433388 T C VASN 3'UTR 0.53 TCGA-CI-6624-01 16 48221275 48221275 C T ABCC11 Missense_Mutation p.A924T 0.17 deleterious(0.05) benign(0.229) TCGA-CI-6624-01 16 50346936 50346936 G A ADCY7 Missense_Mutation p.D914N 0.14 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 16 66642365 66642365 A G CMTM3 Missense_Mutation p.M101V 0.10 tolerated(0.08) benign(0.266) TCGA-CI-6624-01 16 67979683 67979683 G A SLC12A4 Missense_Mutation p.T946I 0.12 tolerated(0.05) possibly_damaging(0.66) TCGA-CI-6624-01 16 70162725 70162725 C A PDPR Missense_Mutation p.Q134K 0.05 tolerated(1) benign(0.071) TCGA-CI-6624-01 16 74443489 74443489 T C CLEC18B Missense_Mutation p.D430G 0.10 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-CI-6624-01 16 78466521 78466521 C G WWOX Missense_Mutation p.R310G 0.10 deleterious(0) possibly_damaging(0.755) TCGA-CI-6624-01 16 79628417 79628417 C T MAF Silent p.V384V 0.31 TCGA-CI-6624-01 16 88689708 88689725 CAGCCGCTCTTCCAGACA - ZC3H18 In_Frame_Del p.R585_S590del 0.26 TCGA-CI-6624-01 17 10401992 10401992 T G MYH1 Missense_Mutation p.K1378Q 0.16 deleterious(0.01) probably_damaging(0.955) TCGA-CI-6624-01 17 14248575 14248575 G T HS3ST3B1 Missense_Mutation p.G262V 0.28 deleterious(0) possibly_damaging(0.903) TCGA-CI-6624-01 17 19316270 19316270 C T RNF112 Missense_Mutation p.A134V 0.15 deleterious(0.01) probably_damaging(0.916) TCGA-CI-6624-01 17 19552331 19552331 G T ALDH3A2 Missense_Mutation p.R16L 0.12 deleterious(0.01) benign(0.129) TCGA-CI-6624-01 17 19708121 19708121 G A ULK2 Missense_Mutation p.P394S 0.16 tolerated(0.34) benign(0.029) TCGA-CI-6624-01 17 21205560 21205560 A T MAP2K3 Missense_Mutation p.I169F 0.08 deleterious(0.03) benign(0.072) TCGA-CI-6624-01 17 2226712 2226712 G C TSR1 3'UTR 0.19 TCGA-CI-6624-01 17 28434869 28434869 G C EFCAB5 Missense_Mutation p.V1447L 0.10 deleterious(0.03) possibly_damaging(0.728) TCGA-CI-6624-01 17 31618780 31618780 C T ASIC2 Silent p.T118T 0.19 TCGA-CI-6624-01 17 32964376 32964376 C T TMEM132E Missense_Mutation p.R694C 0.10 deleterious(0) possibly_damaging(0.899) TCGA-CI-6624-01 17 34431941 34431941 G T CCL4 Missense_Mutation p.A33S 0.31 tolerated(0.62) benign(0.016) TCGA-CI-6624-01 17 37566376 37566376 G T MED1 Missense_Mutation p.P700T 0.14 tolerated_low_confidence(0.11) benign(0.205) TCGA-CI-6624-01 17 42426661 42426661 T C GRN Silent p.R43R 0.12 TCGA-CI-6624-01 17 46148800 46148800 G T CBX1 Missense_Mutation p.N185K 0.10 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-CI-6624-01 17 5298291 5298291 A C NUP88 Missense_Mutation p.D434E 0.11 deleterious(0.01) benign(0.302) TCGA-CI-6624-01 17 56247304 56247304 C T OR4D2 Silent p.G96G 0.16 TCGA-CI-6624-01 17 56642287 56642287 T G TEX14 Missense_Mutation p.E1382A 0.09 deleterious(0.02) benign(0.103) TCGA-CI-6624-01 17 66551875 66551875 C G FAM20A Missense_Mutation p.K138N 0.07 tolerated(0.11) possibly_damaging(0.632) TCGA-CI-6624-01 17 73664640 73664641 TT - SAP30BP Frame_Shift_Del p.R53Sfs*4 0.10 TCGA-CI-6624-01 17 7496124 7496124 G C FXR2 Silent p.P539P 0.23 TCGA-CI-6624-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.48 tolerated(0.11) benign(0.308) TCGA-CI-6624-01 17 77705057 77705057 C T ENPP7 Silent p.P52P 0.25 TCGA-CI-6624-01 17 80017882 80017882 C T DUS1L Silent p.K370K 0.18 TCGA-CI-6624-01 18 34802020 34802020 C T KIAA1328 Missense_Mutation p.P522S 0.20 deleterious(0.01) probably_damaging(1) TCGA-CI-6624-01 18 61449742 61449742 G A SERPINB7 Missense_Mutation p.A46T 0.16 deleterious(0.04) possibly_damaging(0.527) TCGA-CI-6624-01 18 9888145 9888145 A T TXNDC2 3'UTR 0.24 TCGA-CI-6624-01 19 15514412 15514412 T A AKAP8L Missense_Mutation p.N79I 0.13 tolerated(0.1) probably_damaging(0.987) TCGA-CI-6624-01 19 17014662 17014662 G A CPAMD8 Silent p.T1466T 0.14 TCGA-CI-6624-01 19 21131694 21131694 A G ZNF85 Missense_Mutation p.K125R 0.11 deleterious(0.02) possibly_damaging(0.641) TCGA-CI-6624-01 19 22575684 22575684 T C ZNF98 Missense_Mutation p.E118G 0.16 tolerated(0.1) benign(0.109) TCGA-CI-6624-01 19 35504576 35504576 G T GRAMD1A Missense_Mutation p.S284I 0.18 tolerated(0.07) benign(0.094) TCGA-CI-6624-01 19 35823643 35823643 C T CD22 Silent p.L76L 0.10 TCGA-CI-6624-01 19 36278361 36278361 G A ARHGAP33 Missense_Mutation p.G804E 0.15 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-CI-6624-01 19 39967046 39967046 C T SUPT5H 3'UTR 0.12 TCGA-CI-6624-01 19 40433812 40433812 C A FCGBP Missense_Mutation p.A153S 0.24 benign(0.027) TCGA-CI-6624-01 19 46128003 46128003 C A EML2 Missense_Mutation p.G473V 0.27 deleterious(0.01) benign(0.358) TCGA-CI-6624-01 19 50931488 50931488 G A SPIB Silent p.A228A 0.13 TCGA-CI-6624-01 19 53794245 53794245 C T BIRC8 5'UTR 0.17 TCGA-CI-6624-01 19 57839495 57839495 C A ZNF543 Missense_Mutation p.T222N 0.09 deleterious(0.01) benign(0.083) TCGA-CI-6624-01 1 109814051 109814051 G A CELSR2 Missense_Mutation p.A2574T 0.21 tolerated(0.25) benign(0.079) TCGA-CI-6624-01 1 120341217 120341217 C T REG4 Silent p.Q104Q 0.10 TCGA-CI-6624-01 1 152278093 152278093 C T FLG Missense_Mutation p.R3090H 0.51 unknown(0) TCGA-CI-6624-01 1 152284827 152284827 C T FLG Silent p.P845P 0.11 TCGA-CI-6624-01 1 152538364 152538364 T G LCE3E 3'UTR 0.16 TCGA-CI-6624-01 1 152648881 152648881 T A LCE2C 3'UTR 0.15 TCGA-CI-6624-01 1 155313423 155313423 G A ASH1L Missense_Mutation p.R2698C 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-CI-6624-01 1 156571272 156571272 G T GPATCH4 5'Flank 0.21 TCGA-CI-6624-01 1 157668305 157668305 G A FCRL3 Missense_Mutation p.T56I 0.13 tolerated(0.77) benign(0.017) TCGA-CI-6624-01 1 158324361 158324361 T G CD1E Missense_Mutation p.F85V 0.28 deleterious(0) possibly_damaging(0.471) TCGA-CI-6624-01 1 171086456 171086456 C A FMO3 Missense_Mutation p.D491E 0.10 tolerated(0.43) benign(0.032) TCGA-CI-6624-01 1 172579290 172579290 T C SUCO Missense_Mutation p.L1219P 0.27 tolerated(0.11) probably_damaging(0.993) TCGA-CI-6624-01 1 17281854 17281854 C T CROCC Silent p.D1171D 0.15 TCGA-CI-6624-01 1 176709259 176709259 T A PAPPA2 Missense_Mutation p.S1360T 0.16 tolerated(1) benign(0.004) TCGA-CI-6624-01 1 186280289 186280289 C G PRG4 Missense_Mutation p.T1208S 0.20 unknown(0) TCGA-CI-6624-01 1 200817795 200817795 C T CAMSAP2 Missense_Mutation p.T633I 0.10 deleterious(0.01) probably_damaging(0.969) TCGA-CI-6624-01 1 21267793 21267793 T G EIF4G3 Intron 0.15 TCGA-CI-6624-01 1 228468143 228468143 C T OBSCN Nonsense_Mutation p.R3072* 0.25 TCGA-CI-6624-01 1 241929585 241929585 G C WDR64 Missense_Mutation p.L661F 0.18 deleterious(0.05) probably_damaging(0.963) TCGA-CI-6624-01 1 248343714 248343714 C T OR2M2 Missense_Mutation p.L143F 0.09 tolerated(0.23) benign(0.33) TCGA-CI-6624-01 1 248902837 248902837 G T LYPD8 3'UTR 0.18 TCGA-CI-6624-01 1 249144901 249144901 G C ZNF692 Missense_Mutation p.H416Q 0.16 deleterious(0) possibly_damaging(0.828) TCGA-CI-6624-01 1 32691860 32691860 C T EIF3I Silent p.D113D 0.30 TCGA-CI-6624-01 1 34209047 34209047 A G CSMD2 Silent p.F629F 0.19 TCGA-CI-6624-01 1 35447560 35447560 C T ZMYM6NB Silent p.K150K 0.22 TCGA-CI-6624-01 1 37325531 37325531 C A GRIK3 Missense_Mutation p.V292F 0.21 tolerated(0.07) probably_damaging(0.996) TCGA-CI-6624-01 1 43783728 43783728 C A TIE1 Nonsense_Mutation p.Y969* 0.29 TCGA-CI-6624-01 1 52937648 52937648 C G ZCCHC11 Missense_Mutation p.D952H 0.23 deleterious(0.01) probably_damaging(0.978) TCGA-CI-6624-01 1 74492457 74492457 T A LRRIQ3 3'UTR 0.19 TCGA-CI-6624-01 1 74649272 74649272 C G LRRIQ3 Missense_Mutation p.V33L 0.14 deleterious(0.01) benign(0.166) TCGA-CI-6624-01 1 76262704 76262704 T A MSH4 Missense_Mutation p.S12T 0.14 tolerated_low_confidence(0.68) benign(0.075) TCGA-CI-6624-01 1 85491521 85491521 G C MCOLN3 Intron 0.15 TCGA-CI-6624-01 1 91403453 91403453 A C ZNF644 Missense_Mutation p.L1093V 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-CI-6624-01 20 2776412 2776412 C T CPXM1 Missense_Mutation p.R518H 0.21 tolerated(0.2) benign(0.022) TCGA-CI-6624-01 20 3673356 3673356 C A SIGLEC1 Missense_Mutation p.C1281F 0.17 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 20 40033207 40033207 C A CHD6 3'UTR 0.10 TCGA-CI-6624-01 20 41076870 41076870 G A PTPRT Missense_Mutation p.T517M 0.10 deleterious(0) possibly_damaging(0.657) TCGA-CI-6624-01 20 45194900 45194900 T C SLC13A3 Missense_Mutation p.I488V 0.29 tolerated(0.09) benign(0.12) TCGA-CI-6624-01 20 45801436 45801436 C A EYA2 Silent p.G373G 0.11 TCGA-CI-6624-01 20 4707221 4707221 G T PRND 3'UTR 0.14 TCGA-CI-6624-01 20 47874091 47874091 C T ZNFX1 Missense_Mutation p.V843M 0.10 tolerated(0.13) benign(0.424) TCGA-CI-6624-01 20 58467684 58467684 T C SYCP2 Silent p.T622T 0.09 TCGA-CI-6624-01 20 7886843 7886843 T G HAO1 Silent p.R227R 0.12 TCGA-CI-6624-01 21 14417494 14417494 C A RNU6-614P 5'Flank 0.13 TCGA-CI-6624-01 21 41559867 41559867 A G DSCAM Silent p.A867A 0.17 TCGA-CI-6624-01 21 41741082 41741082 C T DSCAM Missense_Mutation p.R200Q 0.12 tolerated(0.28) benign(0.317) TCGA-CI-6624-01 21 43802319 43802319 G A TMPRSS3 Silent p.T269T 0.23 TCGA-CI-6624-01 21 47411942 47411942 G A COL6A1 Missense_Mutation p.G380R 0.33 deleterious(0) unknown(0) TCGA-CI-6624-01 22 17073445 17073445 C T CCT8L2 5'UTR 0.12 TCGA-CI-6624-01 22 26219469 26219469 C T MYO18B Intron 0.11 TCGA-CI-6624-01 22 35947724 35947724 G A RASD2 Missense_Mutation p.R149H 0.21 tolerated(0.07) probably_damaging(0.994) TCGA-CI-6624-01 22 46654759 46654759 G T PKDREJ Nonsense_Mutation p.Y1487* 0.14 TCGA-CI-6624-01 2 102808570 102808570 A C IL1RL2 Missense_Mutation p.K160T 0.11 tolerated(0.13) benign(0.016) TCGA-CI-6624-01 2 111744754 111744754 C A ACOXL Missense_Mutation p.Q377K 0.14 tolerated(0.59) benign(0.003) TCGA-CI-6624-01 2 112849344 112849344 C T TMEM87B Missense_Mutation p.S363F 0.12 deleterious(0) probably_damaging(0.996) TCGA-CI-6624-01 2 125281916 125281916 G C CNTNAP5 Missense_Mutation p.S454T 0.11 deleterious(0.04) benign(0.426) TCGA-CI-6624-01 2 141751586 141751586 G A LRP1B Silent p.S874S 0.27 TCGA-CI-6624-01 2 141806578 141806578 T C LRP1B Missense_Mutation p.E589G 0.11 benign(0.444) TCGA-CI-6624-01 2 151331447 151331447 G A RND3 Missense_Mutation p.A97V 0.16 tolerated(0.16) benign(0.293) TCGA-CI-6624-01 2 153484985 153484985 C A FMNL2 Missense_Mutation p.Q780K 0.11 benign(0.092) TCGA-CI-6624-01 2 154801024 154801024 T C GALNT13 Missense_Mutation p.V5A 0.26 tolerated(0.74) benign(0.001) TCGA-CI-6624-01 2 160112842 160112842 A T WDSUB1 Missense_Mutation p.S333T 0.12 tolerated(0.13) benign(0.192) TCGA-CI-6624-01 2 165552326 165552326 C A COBLL1 Missense_Mutation p.V564F 0.12 tolerated(0.2) possibly_damaging(0.793) TCGA-CI-6624-01 2 168100409 168100409 C A XIRP2 Missense_Mutation p.T836K 0.14 possibly_damaging(0.804) TCGA-CI-6624-01 2 170037974 170037974 G A LRP2 Missense_Mutation p.H3385Y 0.10 probably_damaging(0.999) TCGA-CI-6624-01 2 17699407 17699407 T G RAD51AP2 Missense_Mutation p.K92N 0.21 tolerated(0.08) possibly_damaging(0.787) TCGA-CI-6624-01 2 179397258 179397259 GG T TTN Frame_Shift_Del p.P34695Tfs*52 0.12 TCGA-CI-6624-01 2 179470125 179470125 T C TTN Intron 0.15 TCGA-CI-6624-01 2 179472135 179472135 T G TTN Missense_Mutation p.E17760D 0.14 TCGA-CI-6624-01 2 179534385 179534385 T C TTN Missense_Mutation p.K11802E 0.13 TCGA-CI-6624-01 2 179633497 179633497 T C TTN Silent p.T3022T 0.11 TCGA-CI-6624-01 2 191301608 191301608 G T MFSD6 Nonsense_Mutation p.E285* 0.20 TCGA-CI-6624-01 2 191862981 191862981 G C STAT1 Missense_Mutation p.L199V 0.10 deleterious(0.04) benign(0.3) TCGA-CI-6624-01 2 197143338 197143338 G A HECW2 Missense_Mutation p.R1017W 0.15 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 2 202698582 202698582 T A CDK15 Missense_Mutation p.F206L 0.14 deleterious(0.03) benign(0.36) TCGA-CI-6624-01 2 210705325 210705325 G T UNC80 Missense_Mutation p.D1106Y 0.15 probably_damaging(0.998) TCGA-CI-6624-01 2 211466968 211466968 G A CPS1 Missense_Mutation p.V590M 0.27 deleterious(0.04) possibly_damaging(0.887) TCGA-CI-6624-01 2 220350102 220350102 C T SPEG Silent p.G2548G 0.17 TCGA-CI-6624-01 2 223795495 223795495 G T ACSL3 Missense_Mutation p.G566V 0.12 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 2 226378131 226378131 G A NYAP2 Missense_Mutation p.G89D 0.17 deleterious(0.02) benign(0.098) TCGA-CI-6624-01 2 234363415 234363415 T C DGKD Silent p.Y757Y 0.15 TCGA-CI-6624-01 2 25013425 25013425 T G PTRHD1 Missense_Mutation p.E93A 0.10 tolerated(0.64) benign(0.001) TCGA-CI-6624-01 2 25141305 25141305 G T ADCY3 Silent p.P184P 0.15 TCGA-CI-6624-01 2 25344612 25344612 G A EFR3B Missense_Mutation p.R145Q 0.16 tolerated(0.25) possibly_damaging(0.902) TCGA-CI-6624-01 2 37255111 37255111 A T HEATR5B Missense_Mutation p.F1270I 0.14 deleterious(0) probably_damaging(0.966) TCGA-CI-6624-01 2 38958881 38958881 C T GALM Missense_Mutation p.H261Y 0.12 tolerated(1) benign(0.001) TCGA-CI-6624-01 2 39514040 39514040 C T MAP4K3 Missense_Mutation p.E514K 0.10 tolerated(0.86) benign(0.08) TCGA-CI-6624-01 2 42922931 42922932 - A MTA3 Frame_Shift_Ins p.I307Nfs*2 0.14 TCGA-CI-6624-01 2 55562020 55562020 T C CCDC88A Missense_Mutation p.K646R 0.13 tolerated(0.44) probably_damaging(0.984) TCGA-CI-6624-01 2 7033811 7033811 T A RSAD2 Missense_Mutation p.S300T 0.18 deleterious(0) possibly_damaging(0.829) TCGA-CI-6624-01 3 100170541 100170542 - G LNP1 Intron 0.11 TCGA-CI-6624-01 3 108572602 108572602 G A TRAT1 Missense_Mutation p.V147I 0.13 tolerated(0.53) benign(0.001) TCGA-CI-6624-01 3 122628867 122628867 C G SEMA5B 3'UTR 0.28 TCGA-CI-6624-01 3 125725888 125725888 T C SLC41A3 Intron 0.09 TCGA-CI-6624-01 3 133485148 133485148 A T TF Nonsense_Mutation p.K453* 0.12 TCGA-CI-6624-01 3 136221520 136221520 C T STAG1 Missense_Mutation p.G260R 0.09 tolerated(0.05) benign(0.133) TCGA-CI-6624-01 3 1424682 1424682 G C CNTN6 Silent p.R741R 0.10 TCGA-CI-6624-01 3 151090528 151090528 T C MED12L Missense_Mutation p.Y1245H 0.10 tolerated(0.54) benign(0.002) TCGA-CI-6624-01 3 156867865 156867865 T C CCNL1 Missense_Mutation p.T290A 0.16 tolerated(0.16) benign(0.01) TCGA-CI-6624-01 3 158524841 158524841 C G MFSD1 Missense_Mutation p.I163M 0.14 deleterious(0) benign(0.281) TCGA-CI-6624-01 3 164906727 164906727 T G SLITRK3 Missense_Mutation p.H631P 0.17 tolerated(0.37) benign(0.043) TCGA-CI-6624-01 3 167159837 167159837 T C SERPINI2 3'UTR 0.12 TCGA-CI-6624-01 3 169815138 169815139 CT - PHC3 Frame_Shift_Del p.Q956Rfs*3 0.08 TCGA-CI-6624-01 3 182584055 182584055 G C ATP11B Splice_Site p.X482_splice 0.24 TCGA-CI-6624-01 3 190347158 190347158 G C IL1RAP Missense_Mutation p.E308Q 0.13 tolerated(0.41) possibly_damaging(0.539) TCGA-CI-6624-01 3 191093014 191093014 G T CCDC50 Silent p.L204L 0.11 TCGA-CI-6624-01 3 196033843 196033843 C G TCTEX1D2 Silent p.V96V 0.14 TCGA-CI-6624-01 3 27329205 27329205 G C NEK10 Nonsense_Mutation p.Y591* 0.09 TCGA-CI-6624-01 3 30029654 30029654 T C RBMS3 Silent p.P373P 0.14 TCGA-CI-6624-01 3 32761648 32761648 A G CNOT10 Missense_Mutation p.R323G 0.18 deleterious(0) probably_damaging(0.992) TCGA-CI-6624-01 3 47042529 47042529 C T NBEAL2 Silent p.N1448N 0.30 TCGA-CI-6624-01 3 48820420 48820420 G A PRKAR2A Missense_Mutation p.R181W 0.09 deleterious(0.02) benign(0.079) TCGA-CI-6624-01 3 49153327 49153327 C T USP19 Missense_Mutation p.D506N 0.08 deleterious(0) possibly_damaging(0.785) TCGA-CI-6624-01 3 49724706 49724706 A G MST1 Silent p.T161T 0.10 TCGA-CI-6624-01 3 55107826 55107826 A T CACNA2D3 Missense_Mutation p.E1041D 0.10 tolerated(1) benign(0.006) TCGA-CI-6624-01 3 57458291 57458291 G T snoU13 5'Flank 0.11 TCGA-CI-6624-01 3 62248341 62248341 T C PTPRG Intron 0.17 TCGA-CI-6624-01 3 65376868 65376868 G T MAGI1 Missense_Mutation p.P789T 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-CI-6624-01 3 69987181 69987181 A C MITF Missense_Mutation p.N188T 0.10 tolerated(0.06) benign(0.373) TCGA-CI-6624-01 3 77695246 77695246 T C ROBO2 3'UTR 0.13 TCGA-CI-6624-01 3 96533676 96533676 A T EPHA6 Missense_Mutation p.H70L 0.15 tolerated_low_confidence(0.1) benign(0.001) TCGA-CI-6624-01 3 97851635 97851635 T C OR5H1 Silent p.L32L 0.13 TCGA-CI-6624-01 3 9965923 9965923 C T IL17RC Missense_Mutation p.P328L 0.09 deleterious(0.02) benign(0.126) TCGA-CI-6624-01 4 110384302 110384302 G C SEC24B Missense_Mutation p.V127L 0.17 tolerated_low_confidence(0.18) benign(0.001) TCGA-CI-6624-01 4 119951306 119951306 T A SYNPO2 Missense_Mutation p.V459D 0.22 deleterious(0) possibly_damaging(0.786) TCGA-CI-6624-01 4 144457636 144457636 A G SMARCA5 Missense_Mutation p.I434V 0.20 tolerated(0.37) benign(0.004) TCGA-CI-6624-01 4 144461614 144461614 G T SMARCA5 Missense_Mutation p.M623I 0.15 tolerated(0.34) benign(0.001) TCGA-CI-6624-01 4 155241687 155241687 A G DCHS2 Missense_Mutation p.S1167P 0.11 deleterious(0) probably_damaging(0.965) TCGA-CI-6624-01 4 169321988 169321988 T A DDX60L Silent p.T1160T 0.09 TCGA-CI-6624-01 4 30723479 30723479 G A PCDH7 Silent p.S145S 0.10 TCGA-CI-6624-01 4 53463793 53463793 G A USP46 3'UTR 0.10 TCGA-CI-6624-01 4 56458370 56458370 C T PDCL2 5'UTR 0.32 TCGA-CI-6624-01 4 619401 619401 G T PDE6B 5'UTR 0.24 TCGA-CI-6624-01 4 69795685 69795685 G A UGT2A3 Missense_Mutation p.A477V 0.13 deleterious(0.03) probably_damaging(0.954) TCGA-CI-6624-01 4 99997944 99997944 T A ADH5 Nonsense_Mutation p.K159* 0.26 TCGA-CI-6624-01 5 101748715 101748715 A G SLCO6A1 Silent p.S535S 0.10 TCGA-CI-6624-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.11 TCGA-CI-6624-01 5 112175480 112175480 G T APC Nonsense_Mutation p.E1397* 0.15 TCGA-CI-6624-01 5 121758612 121758612 G A SNCAIP Silent p.T60T 0.13 TCGA-CI-6624-01 5 140555738 140555738 T G PCDHB7 3'UTR 0.14 TCGA-CI-6624-01 5 140783404 140783404 T G PCDHGA9 Missense_Mutation p.N295K 0.13 tolerated_low_confidence(0.08) benign(0.214) TCGA-CI-6624-01 5 145543965 145543965 C T LARS Missense_Mutation p.D168N 0.15 tolerated(0.05) benign(0.103) TCGA-CI-6624-01 5 149678174 149678174 A G ARSI Missense_Mutation p.Y105H 0.12 tolerated(0.07) possibly_damaging(0.651) TCGA-CI-6624-01 5 150946372 150946372 A G FAT2 Silent p.I707I 0.16 TCGA-CI-6624-01 5 153026596 153026596 C T GRIA1 Missense_Mutation p.T120M 0.21 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 5 158524127 158524127 A G EBF1 Missense_Mutation p.L49P 0.09 deleterious(0) possibly_damaging(0.761) TCGA-CI-6624-01 5 169535099 169535099 C T FOXI1 Silent p.F207F 0.19 TCGA-CI-6624-01 5 175111225 175111225 G A HRH2 Missense_Mutation p.R330Q 0.14 tolerated(0.84) benign(0.001) TCGA-CI-6624-01 5 180057235 180057235 G C FLT4 Missense_Mutation p.T168R 0.18 deleterious(0) probably_damaging(0.998) TCGA-CI-6624-01 5 23527633 23527633 C G PRDM9 Silent p.G812G 0.12 TCGA-CI-6624-01 5 26906229 26906229 A C CDH9 Missense_Mutation p.I217R 0.19 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 5 38463081 38463081 G A EGFLAM Missense_Mutation p.R956Q 0.17 deleterious(0.01) probably_damaging(0.916) TCGA-CI-6624-01 5 43161353 43161353 A G ZNF131 Missense_Mutation p.N125S 0.12 tolerated(0.06) benign(0.34) TCGA-CI-6624-01 5 61747626 61747626 C G IPO11 Missense_Mutation p.L168V 0.19 deleterious(0) probably_damaging(0.999) TCGA-CI-6624-01 5 67522770 67522770 C T PIK3R1 Silent p.P89P 0.11 TCGA-CI-6624-01 5 74037379 74037379 T C GFM2 Missense_Mutation p.N302S 0.31 tolerated(0.63) possibly_damaging(0.734) TCGA-CI-6624-01 5 76335452 76335452 C A AGGF1 Missense_Mutation p.P260T 0.12 tolerated(0.13) benign(0.013) TCGA-CI-6624-01 5 98212205 98212205 C G CHD1 Missense_Mutation p.D1099H 0.14 deleterious(0) possibly_damaging(0.827) TCGA-CI-6624-01 6 105564595 105564595 T A BVES Missense_Mutation p.D266V 0.14 deleterious(0) probably_damaging(0.999) TCGA-CI-6624-01 6 117997223 117997223 C T NUS1 Silent p.S130S 0.06 TCGA-CI-6624-01 6 144768791 144768791 G C UTRN Missense_Mutation p.E592D 0.24 tolerated(0.2) probably_damaging(0.992) TCGA-CI-6624-01 6 150005395 150005395 T C LATS1 Missense_Mutation p.Y277C 0.20 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-CI-6624-01 6 152651268 152651268 T G SYNE1 Missense_Mutation p.Y4851S 0.10 benign(0.075) TCGA-CI-6624-01 6 154429112 154429112 T C OPRM1 Intron 0.26 TCGA-CI-6624-01 6 24146446 24146446 G C NRSN1 3'UTR 0.10 TCGA-CI-6624-01 6 30297167 30297167 G C TRIM39 Missense_Mutation p.V25L 0.09 tolerated(0.05) possibly_damaging(0.496) TCGA-CI-6624-01 6 31473513 31473513 C T MICB Missense_Mutation p.R64C 0.21 tolerated(0.22) benign(0.002) TCGA-CI-6624-01 6 32334074 32334074 G A C6orf10 Nonsense_Mutation p.R58* 0.19 TCGA-CI-6624-01 6 39282826 39282826 T A KCNK16 3'UTR 0.15 TCGA-CI-6624-01 6 41652465 41652465 G C TFEB Missense_Mutation p.L435V 0.18 tolerated(0.52) probably_damaging(0.973) TCGA-CI-6624-01 6 43400851 43400851 G A ABCC10 Missense_Mutation p.G378E 0.29 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 6 56918146 56918146 T C KIAA1586 Silent p.N283N 0.12 TCGA-CI-6624-01 6 64401918 64401918 C G PHF3 Silent p.V827V 0.14 TCGA-CI-6624-01 6 70964869 70964869 C T COL9A1 Missense_Mutation p.G532E 0.10 probably_damaging(0.995) TCGA-CI-6624-01 6 80197476 80197476 G C LCA5 Missense_Mutation p.P447A 0.26 tolerated(0.29) benign(0.007) TCGA-CI-6624-01 6 8422784 8422784 C A SLC35B3 Missense_Mutation p.G165C 0.11 deleterious(0) probably_damaging(0.992) TCGA-CI-6624-01 7 100088675 100088675 A T NYAP1 Missense_Mutation p.H742L 0.09 tolerated(0.12) benign(0.034) TCGA-CI-6624-01 7 114619714 114619714 C T MDFIC Missense_Mutation p.S233L 0.17 deleterious(0) probably_damaging(0.951) TCGA-CI-6624-01 7 121653015 121653015 C A PTPRZ1 Silent p.P1305P 0.08 TCGA-CI-6624-01 7 141408833 141408833 C T WEE2 Missense_Mutation p.P92L 0.12 deleterious(0.02) benign(0.172) TCGA-CI-6624-01 7 142574335 142574335 T A TRPV6 Silent p.G196G 0.18 TCGA-CI-6624-01 7 144345964 144345964 G A TPK1 Missense_Mutation p.P65L 0.13 deleterious(0) probably_damaging(1) TCGA-CI-6624-01 7 148767593 148767593 G A ZNF786 Silent p.S757S 0.17 TCGA-CI-6624-01 7 150720563 150720563 A T ATG9B Missense_Mutation p.C210S 0.12 deleterious(0) probably_damaging(0.939) TCGA-CI-6624-01 7 18975537 18975537 C A HDAC9 Missense_Mutation p.A970D 0.11 deleterious(0) probably_damaging(0.938) TCGA-CI-6624-01 7 1976468 1976468 C A MAD1L1 Missense_Mutation p.R554S 0.20 deleterious(0) benign(0.031) TCGA-CI-6624-01 7 21675658 21675658 G T DNAH11 Missense_Mutation p.R1562L 0.13 possibly_damaging(0.573) TCGA-CI-6624-01 7 21892225 21892225 C A DNAH11 Silent p.T3686T 0.24 TCGA-CI-6624-01 7 43547684 43547684 G A HECW1 Missense_Mutation p.E1274K 0.09 deleterious(0.01) probably_damaging(0.913) TCGA-CI-6624-01 7 4900660 4900660 T A PAPOLB Missense_Mutation p.Y260F 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-CI-6624-01 7 50070859 50070859 C A ZPBP Missense_Mutation p.A179S 0.10 tolerated(0.2) benign(0.225) TCGA-CI-6624-01 7 50358694 50358694 T A IKZF1 Missense_Mutation p.S13T 0.09 tolerated(0.09) benign(0.018) TCGA-CI-6624-01 7 72891549 72891549 T A BAZ1B Missense_Mutation p.I748F 0.16 deleterious(0.01) possibly_damaging(0.704) TCGA-CI-6624-01 7 74482500 74482500 A G WBSCR16 Missense_Mutation p.L187P 0.08 deleterious(0) probably_damaging(0.996) TCGA-CI-6624-01 7 77569463 77569463 C G PHTF2 Silent p.L494L 0.13 TCGA-CI-6624-01 8 109797189 109797189 C T TMEM74 Missense_Mutation p.A47T 0.11 tolerated(0.54) benign(0) TCGA-CI-6624-01 8 113293501 113293501 A T CSMD3 Missense_Mutation p.V3137D 0.10 deleterious(0) possibly_damaging(0.61) TCGA-CI-6624-01 8 133882057 133882057 G A TG Missense_Mutation p.G87E 0.25 tolerated(0.09) benign(0.305) TCGA-CI-6624-01 8 143603366 143603366 T A BAI1 Missense_Mutation p.F1022Y 0.28 deleterious(0) benign(0) TCGA-CI-6624-01 8 144734675 144734676 - T ZNF623 3'UTR 0.13 TCGA-CI-6624-01 8 37823967 37823967 C A ADRB3 Missense_Mutation p.E7D 0.20 tolerated(0.17) benign(0.013) TCGA-CI-6624-01 8 42174239 42174239 C G IKBKB Missense_Mutation p.I314M 0.09 deleterious(0) benign(0.406) TCGA-CI-6624-01 8 73921355 73921355 G A TERF1 Missense_Mutation p.M78I 0.25 deleterious(0) probably_damaging(0.912) TCGA-CI-6624-01 8 74868290 74868290 C G TCEB1 Splice_Site p.X2_splice 0.32 TCGA-CI-6624-01 8 77617811 77617811 T A ZFHX4 Silent p.G496G 0.16 TCGA-CI-6624-01 9 100431157 100431157 C T NCBP1 Silent p.D682D 0.14 TCGA-CI-6624-01 9 103090223 103090223 G C TEX10 Silent p.S549S 0.24 TCGA-CI-6624-01 9 104448889 104448889 T C GRIN3A Silent p.Q431Q 0.15 TCGA-CI-6624-01 9 116857397 116857397 A G KIF12 Missense_Mutation p.V204A 0.13 deleterious(0.01) possibly_damaging(0.822) TCGA-CI-6624-01 9 133780750 133780750 C T FIBCD1 Missense_Mutation p.V333M 0.10 deleterious(0) possibly_damaging(0.61) TCGA-CI-6624-01 9 138378805 138378805 C T PPP1R26 Missense_Mutation p.P817S 0.10 tolerated(0.93) benign(0.001) TCGA-CI-6624-01 9 34834730 34834730 C T FAM205B RNA 0.10 TCGA-CI-6624-01 9 37740330 37740330 C A FRMPD1 Missense_Mutation p.T602N 0.14 deleterious(0) possibly_damaging(0.856) TCGA-CI-6624-01 9 66459899 66459899 C T RP11-262H14.1 RNA 0.20 TCGA-CI-6624-01 X 105190320 105190320 T A NRK Missense_Mutation p.L1407H 0.31 deleterious(0.04) possibly_damaging(0.614) TCGA-CI-6624-01 X 105199684 105199685 - G NRK 3'UTR 0.15 TCGA-CI-6624-01 X 107913455 107913455 C T COL4A5 Intron 0.13 TCGA-CI-6624-01 X 110390962 110390962 C A PAK3 Intron 0.12 TCGA-CI-6624-01 X 135482230 135482230 A G GPR112 Missense_Mutation p.I2844V 0.08 tolerated(0.1) benign(0.098) TCGA-CI-6624-01 X 136113264 136113264 G C GPR101 Silent p.P190P 0.17 TCGA-CI-6624-01 X 136113265 136113265 G A GPR101 Missense_Mutation p.P190L 0.17 tolerated(0.42) possibly_damaging(0.682) TCGA-CI-6624-01 X 140996485 140996485 T A MAGEC1 Missense_Mutation p.F1099I 0.14 deleterious(0) unknown(0) TCGA-CI-6624-01 X 142718929 142718929 T C SLITRK4 5'UTR 0.12 TCGA-CI-6624-01 X 142803981 142803981 C G SPANXN2 5'UTR 0.21 TCGA-CI-6624-01 X 153588464 153588464 G C FLNA Missense_Mutation p.I1233M 0.10 tolerated(0.19) benign(0.162) TCGA-CI-6624-01 X 154348409 154348409 T A BRCC3 Missense_Mutation p.L312H 0.12 deleterious(0) unknown(0) TCGA-CI-6624-01 X 19002035 19002035 T G PHKA2 Missense_Mutation p.N6H 0.18 deleterious(0) possibly_damaging(0.77) TCGA-CI-6624-01 X 21896673 21896673 A C MBTPS2 Missense_Mutation p.K375T 0.11 tolerated(0.57) benign(0.001) TCGA-CI-6624-01 X 30877657 30877657 G A TAB3 Nonsense_Mutation p.R17* 0.11 TCGA-CI-6624-01 X 36337369 36337369 G A CXorf30 Missense_Mutation p.S243N 0.11 tolerated(0.12) benign(0.022) TCGA-CI-6624-01 X 54224714 54224714 T C WNK3 3'UTR 0.18 TCGA-CI-6624-01 X 54578770 54578770 G C GNL3L Silent p.L409L 0.18 TCGA-CI-6624-01 X 66765576 66765576 A C AR Missense_Mutation p.Q196H 0.19 tolerated_low_confidence(0.11) benign(0.01) TCGA-CI-6624-01 X 69176977 69176977 C T EDA Missense_Mutation p.A166V 0.12 tolerated_low_confidence(0.07) unknown(0) TCGA-CI-6624-01 X 70465285 70465285 A C ZMYM3 Missense_Mutation p.F971V 0.11 tolerated(0.19) benign(0.419) TCGA-CI-6624-01 X 82764016 82764016 G A POU3F4 Silent p.S228S 0.15 TCGA-CI-6624-01 X 82764460 82764460 G A POU3F4 3'UTR 0.09 TCGA-CI-6624-01 X 83576866 83576866 A C HDX 3'UTR 0.17 TCGA-CI-6624-01 X 90692588 90692588 A C PABPC5 3'UTR 0.16 TCGA-CL-4957-01 10 104126890 104126890 G A GBF1 Missense_Mutation p.A827T 0.23 deleterious(0.04) possibly_damaging(0.859) TCGA-CL-4957-01 10 134712495 134712495 C T TTC40 Missense_Mutation p.G1063S 0.45 tolerated(1) benign(0.005) TCGA-CL-4957-01 10 15089163 15089163 G - OLAH 5'UTR 0.37 TCGA-CL-4957-01 10 28233786 28233786 C T ARMC4 Missense_Mutation p.V498M 0.44 deleterious(0.02) probably_damaging(0.953) TCGA-CL-4957-01 10 72462094 72462094 C A ADAMTS14 Silent p.T183T 0.23 TCGA-CL-4957-01 10 75391894 75391894 C A MYOZ1 Nonsense_Mutation p.E232* 0.14 TCGA-CL-4957-01 11 108114679 108114679 G A ATM Splice_Site p.X166_splice 0.33 TCGA-CL-4957-01 11 130318898 130318898 T C ADAMTS15 Silent p.A10A 0.08 TCGA-CL-4957-01 11 49831352 49831352 G T RP11-707M1.1 RNA 0.11 TCGA-CL-4957-01 11 6478170 6478170 G T TRIM3 Silent p.G262G 0.40 TCGA-CL-4957-01 12 124409644 124409644 C T DNAH10 Silent p.Y3820Y 0.46 TCGA-CL-4957-01 12 14930548 14930548 G A H2AFJ 3'UTR 0.18 TCGA-CL-4957-01 12 41967122 41967122 C T PDZRN4 Silent p.A847A 0.24 TCGA-CL-4957-01 12 46322235 46322235 G C SCAF11 Missense_Mutation p.P417A 0.09 tolerated(0.13) benign(0.079) TCGA-CL-4957-01 12 55688853 55688853 G A OR6C6 Missense_Mutation p.T55M 0.15 deleterious_low_confidence(0.01) benign(0.149) TCGA-CL-4957-01 12 69229624 69229624 G T MDM2 Missense_Mutation p.V234L 0.25 tolerated(0.19) probably_damaging(0.949) TCGA-CL-4957-01 12 75884291 75884291 G A GLIPR1 Missense_Mutation p.G176R 0.13 deleterious(0) probably_damaging(0.996) TCGA-CL-4957-01 12 91348505 91348505 G A CCER1 Silent p.L5L 0.21 TCGA-CL-4957-01 12 93894974 93894974 C T MRPL42 Silent p.L136L 0.50 TCGA-CL-4957-01 13 20797297 20797297 C T GJB6 Missense_Mutation p.R108Q 0.30 tolerated(0.49) benign(0.017) TCGA-CL-4957-01 13 35736014 35736014 G A NBEA Missense_Mutation p.R1330H 0.11 deleterious(0) benign(0.298) TCGA-CL-4957-01 14 62193459 62193459 C T HIF1A Nonsense_Mutation p.R189* 0.08 TCGA-CL-4957-01 14 69994520 69994520 C T PLEKHD1 Missense_Mutation p.R408W 0.21 deleterious(0.04) possibly_damaging(0.619) TCGA-CL-4957-01 15 101589912 101589912 A T LRRK1 Missense_Mutation p.Q1121H 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-CL-4957-01 15 37184249 37184249 T A MEIS2 3'UTR 0.21 TCGA-CL-4957-01 15 68612685 68612685 G A ITGA11 Silent p.S818S 0.23 TCGA-CL-4957-01 15 69706723 69706723 C A KIF23 5'UTR 0.17 TCGA-CL-4957-01 15 72106356 72106356 C T CTD-2524L6.3 5'Flank 0.16 TCGA-CL-4957-01 15 74032225 74032225 T C C15orf59 3'UTR 0.45 TCGA-CL-4957-01 16 24788528 24788528 A C TNRC6A Missense_Mutation p.K146N 0.22 deleterious(0) possibly_damaging(0.617) TCGA-CL-4957-01 16 53337918 53337918 C T CHD9 Silent p.N2000N 0.18 TCGA-CL-4957-01 16 67976414 67976414 G A LCAT Silent p.F200F 0.45 TCGA-CL-4957-01 17 3029986 3029986 G T OR1G1 Missense_Mutation p.P287H 0.45 deleterious(0) probably_damaging(0.997) TCGA-CL-4957-01 17 35913864 35913864 G A SYNRG Missense_Mutation p.T654I 0.52 tolerated(0.06) benign(0.206) TCGA-CL-4957-01 17 47874214 47874214 C T KAT7 Missense_Mutation p.P89L 0.45 deleterious_low_confidence(0) benign(0.162) TCGA-CL-4957-01 17 49257867 49257867 A T MBTD1 3'UTR 0.11 TCGA-CL-4957-01 17 60769820 60769820 C T MRC2 3'UTR 0.19 TCGA-CL-4957-01 17 70120275 70120276 - GA SOX9 Frame_Shift_Ins p.H427Nfs*44 0.27 TCGA-CL-4957-01 17 74477505 74477505 G A RHBDF2 Silent p.P34P 0.26 TCGA-CL-4957-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.68 deleterious(0) probably_damaging(1) TCGA-CL-4957-01 17 78197119 78197119 G A SLC26A11 Missense_Mutation p.G166S 0.49 tolerated(0.64) benign(0.053) TCGA-CL-4957-01 18 30903505 30903505 T C CCDC178 Silent p.E324E 0.20 TCGA-CL-4957-01 18 7231782 7231782 G A LRRC30 Missense_Mutation p.A216T 0.27 tolerated(0.15) possibly_damaging(0.621) TCGA-CL-4957-01 18 9280967 9280967 A C ANKRD12 Missense_Mutation p.E2011A 0.28 deleterious(0) probably_damaging(0.999) TCGA-CL-4957-01 19 10610735 10610735 A G KEAP1 5'UTR 0.12 TCGA-CL-4957-01 19 19375671 19375671 C T TM6SF2 Silent p.S312S 0.39 TCGA-CL-4957-01 19 37441368 37441368 G A ZNF568 Missense_Mutation p.R438Q 0.30 deleterious(0) possibly_damaging(0.702) TCGA-CL-4957-01 19 55610381 55610381 C T PPP1R12C Missense_Mutation p.V272M 0.41 tolerated(0.05) probably_damaging(0.999) TCGA-CL-4957-01 1 110210716 110210716 A C GSTM2 5'UTR 0.10 TCGA-CL-4957-01 1 115161083 115161083 G T DENND2C Missense_Mutation p.D416E 0.21 tolerated(1) benign(0.02) TCGA-CL-4957-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.60 deleterious(0.01) benign(0.045) TCGA-CL-4957-01 1 149858928 149858929 - AC HIST2H2AC 3'UTR 0.18 TCGA-CL-4957-01 1 152188548 152188548 C T HRNR Missense_Mutation p.G1853S 0.12 unknown(0) TCGA-CL-4957-01 1 158614056 158614056 G T SPTA1 Missense_Mutation p.A1442E 0.07 deleterious(0.03) probably_damaging(0.931) TCGA-CL-4957-01 1 17081546 17081546 G A MST1L RNA 0.27 TCGA-CL-4957-01 1 175292484 175292484 G A TNR 3'UTR 0.18 TCGA-CL-4957-01 1 206905783 206905783 G A MAPKAPK2 Intron 0.15 TCGA-CL-4957-01 1 207013213 207013213 G A IL19 Missense_Mutation p.V115M 0.27 tolerated(0.51) benign(0.296) TCGA-CL-4957-01 1 25229035 25229035 C T RUNX3 Missense_Mutation p.A290T 0.12 tolerated(0.11) benign(0.015) TCGA-CL-4957-01 1 37499599 37499599 C A GRIK3 Silent p.R37R 0.51 TCGA-CL-4957-01 1 39800240 39800240 C T MACF1 Intron 0.10 TCGA-CL-4957-01 22 45813760 45813760 A G RIBC2 Missense_Mutation p.N159D 0.27 tolerated(0.34) benign(0.376) TCGA-CL-4957-01 2 102038910 102038910 T C RFX8 Missense_Mutation p.T33A 0.18 deleterious(0.02) benign(0.384) TCGA-CL-4957-01 2 130843559 130843559 A C POTEF Missense_Mutation p.F536V 0.25 deleterious_low_confidence(0.01) benign(0.043) TCGA-CL-4957-01 2 141093221 141093221 C A LRP1B Nonsense_Mutation p.G4027* 0.49 TCGA-CL-4957-01 2 170592282 170592282 G A KLHL23 Missense_Mutation p.R253H 0.34 deleterious(0.03) possibly_damaging(0.719) TCGA-CL-4957-01 2 185463741 185463741 C T ZNF804A Missense_Mutation p.R19C 0.36 deleterious(0) possibly_damaging(0.876) TCGA-CL-4957-01 2 187693232 187693233 - ATCT ZSWIM2 Frame_Shift_Ins p.A461Rfs*4 0.10 TCGA-CL-4957-01 2 220118624 220118624 G A TUBA4A 5'UTR 0.41 TCGA-CL-4957-01 2 238289825 238289825 G A COL6A3 Missense_Mutation p.R544W 0.15 probably_damaging(1) TCGA-CL-4957-01 2 28627045 28627045 G A FOSL2 Silent p.Q58Q 0.47 TCGA-CL-4957-01 2 71160291 71160291 G A VAX2 Missense_Mutation p.R277Q 0.15 tolerated(0.13) benign(0.003) TCGA-CL-4957-01 2 96993483 96993483 C T ITPRIPL1 Nonsense_Mutation p.R380* 0.29 TCGA-CL-4957-01 2 98378659 98378659 A C TMEM131 Silent p.T1576T 0.47 TCGA-CL-4957-01 3 107789952 107789952 A G CD47 Missense_Mutation p.F160L 0.47 tolerated(0.64) probably_damaging(0.987) TCGA-CL-4957-01 3 12641201 12641201 C A RAF1 Missense_Mutation p.G366V 0.19 deleterious(0) probably_damaging(0.997) TCGA-CL-4957-01 3 129293279 129293279 C T PLXND1 Missense_Mutation p.R862H 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-CL-4957-01 3 154856008 154856008 G A MME Missense_Mutation p.E280K 0.12 deleterious(0) probably_damaging(1) TCGA-CL-4957-01 3 186953693 186953693 C T MASP1 Missense_Mutation p.G656S 0.18 deleterious(0) probably_damaging(0.969) TCGA-CL-4957-01 3 197640673 197640673 C A IQCG Intron 0.15 TCGA-CL-4957-01 3 31743979 31743979 C G OSBPL10 Missense_Mutation p.V373L 0.24 tolerated(0.28) benign(0.008) TCGA-CL-4957-01 3 52821072 52821072 G A ITIH1 Silent p.A615A 0.50 TCGA-CL-4957-01 3 86010792 86010792 T A CADM2 Missense_Mutation p.V315E 0.26 deleterious(0) possibly_damaging(0.779) TCGA-CL-4957-01 4 107230010 107230010 G C TBCK Missense_Mutation p.I36M 0.24 deleterious(0) probably_damaging(0.998) TCGA-CL-4957-01 4 155411003 155411003 C T DCHS2 Missense_Mutation p.R502H 0.31 deleterious(0.01) benign(0.12) TCGA-CL-4957-01 4 47163380 47163380 C A GABRB1 Missense_Mutation p.P119T 0.36 deleterious(0) probably_damaging(0.998) TCGA-CL-4957-01 4 68928807 68928807 A C TMPRSS11F Intron 0.20 TCGA-CL-4957-01 5 112175101 112175101 T A APC Nonsense_Mutation p.C1270* 0.14 TCGA-CL-4957-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.38 TCGA-CL-4957-01 5 13776570 13776570 C T DNAH5 Nonsense_Mutation p.W3117* 0.11 TCGA-CL-4957-01 5 140051127 140051128 AG - DND1 Frame_Shift_Del p.P271Rfs*47 0.30 TCGA-CL-4957-01 5 140168348 140168348 A - PCDHA1 Intron 0.34 TCGA-CL-4957-01 5 140798992 140798992 C T PCDHGB7 Silent p.H522H 0.40 TCGA-CL-4957-01 5 154395374 154395374 G A KIF4B Missense_Mutation p.R652H 0.24 tolerated(0.06) benign(0.035) TCGA-CL-4957-01 5 1816116 1816116 G A NDUFS6 3'UTR 0.23 TCGA-CL-4957-01 5 49694982 49694982 C T EMB 3'UTR 0.22 TCGA-CL-4957-01 5 5319287 5319287 C T ADAMTS16 3'UTR 0.16 TCGA-CL-4957-01 6 102266307 102266307 G A GRIK2 Silent p.A422A 0.26 TCGA-CL-4957-01 6 17849648 17849648 C T KIF13A Missense_Mutation p.A264T 0.23 deleterious(0) probably_damaging(0.997) TCGA-CL-4957-01 6 27879262 27879262 C A OR2B2 Missense_Mutation p.G279V 0.10 tolerated(0.07) probably_damaging(0.994) TCGA-CL-4957-01 6 72892766 72892766 G T RIMS1 Missense_Mutation p.S531I 0.14 deleterious(0) possibly_damaging(0.52) TCGA-CL-4957-01 7 107591707 107591707 C A LAMB1 Nonsense_Mutation p.E1119* 0.45 TCGA-CL-4957-01 7 128447424 128447424 C T CCDC136 Missense_Mutation p.T477M 0.18 tolerated(1) benign(0.007) TCGA-CL-4957-01 7 146825883 146825883 C T CNTNAP2 Silent p.N346N 0.22 TCGA-CL-4957-01 7 4188998 4188998 C T SDK1 Missense_Mutation p.R1510W 0.49 deleterious(0) probably_damaging(1) TCGA-CL-4957-01 7 5354662 5354662 G A TNRC18 Missense_Mutation p.A2327V 0.38 possibly_damaging(0.483) TCGA-CL-4957-01 7 88963128 88963128 G T ZNF804B Nonsense_Mutation p.E278* 0.32 TCGA-CL-4957-01 7 97841652 97841652 C T BHLHA15 Missense_Mutation p.R11W 0.46 deleterious_low_confidence(0) possibly_damaging(0.65) TCGA-CL-4957-01 7 98563362 98563362 G A TRRAP Silent p.T2333T 0.17 TCGA-CL-4957-01 8 143784537 143784537 G A LY6K Silent p.A82A 0.27 TCGA-CL-4957-01 8 57354009 57354009 C A PENK Missense_Mutation p.R209L 0.25 deleterious(0) probably_damaging(1) TCGA-CL-4957-01 9 115200772 115200772 A C HSDL2 Missense_Mutation p.K220N 0.33 deleterious(0.03) benign(0.036) TCGA-CL-4957-01 9 116770809 116770809 G A ZNF618 Silent p.P211P 0.22 TCGA-CL-4957-01 9 138515883 138515883 G A GLT6D1 3'UTR 0.23 TCGA-CL-4957-01 9 139089237 139089237 C T LHX3 Silent p.G381G 0.24 TCGA-CL-4957-01 9 94486979 94486979 G A ROR2 Silent p.I599I 0.10 TCGA-CL-4957-01 X 105855730 105855730 G A CXorf57 Silent p.E140E 0.39 TCGA-CL-4957-01 X 118109149 118109149 G A LONRF3 Missense_Mutation p.V136M 0.36 tolerated(0.12) benign(0.013) TCGA-CL-4957-01 X 119500396 119500396 C T ATP1B4 Missense_Mutation p.A27V 0.14 tolerated_low_confidence(1) benign(0.001) TCGA-CL-4957-01 X 137785220 137785220 G A FGF13 Nonsense_Mutation p.R120* 0.35 TCGA-CL-4957-01 X 140995890 140995890 C A MAGEC1 Missense_Mutation p.S900R 0.06 deleterious(0.01) unknown(0) TCGA-CL-4957-01 X 153186923 153186923 C T ARHGAP4 Silent p.T110T 0.42 TCGA-CL-4957-01 X 155003588 155003588 C T SPRY3 Missense_Mutation p.R19C 0.31 deleterious(0.04) benign(0.002) TCGA-CL-4957-01 X 26213357 26213357 T C MAGEB6 3'UTR 0.30 TCGA-CL-4957-01 X 34961640 34961640 G T FAM47B Missense_Mutation p.R231L 0.37 tolerated(0.15) benign(0.357) TCGA-CL-4957-01 X 38033473 38033473 C T SRPX Missense_Mutation p.G97S 0.12 deleterious(0) probably_damaging(1) TCGA-CL-4957-01 X 47270144 47270144 G A ZNF157 Missense_Mutation p.E89K 0.09 tolerated(0.15) probably_damaging(0.98) TCGA-CL-4957-01 X 49022557 49022557 C T MAGIX Missense_Mutation p.A275V 0.09 tolerated(0.05) benign(0.034) TCGA-CL-4957-01 X 63412066 63412076 TCCTTGGTAGG - AMER1 Frame_Shift_Del p.T364Rfs*10 0.33 TCGA-CL-4957-01 X 67293058 67293058 C T OPHN1 Silent p.T590T 0.42 TCGA-CL-4957-01 X 69282340 69282340 C T OTUD6A 5'Flank 0.45 TCGA-CL-4957-01 X 92964568 92964568 T G FAM133A Missense_Mutation p.N50K 0.41 tolerated_low_confidence(1) benign(0.171) TCGA-CL-5917-01 10 134647589 134647589 G A TTC40 Missense_Mutation p.S2302L 0.90 tolerated(0.49) benign(0.002) TCGA-CL-5917-01 10 74673223 74673223 C T OIT3 Silent p.V316V 0.37 TCGA-CL-5917-01 11 108216486 108216486 C A ATM Missense_Mutation p.S2812Y 0.44 tolerated(0.18) possibly_damaging(0.781) TCGA-CL-5917-01 11 134252804 134252804 C T B3GAT1 Missense_Mutation p.G240S 0.20 tolerated(0.08) probably_damaging(1) TCGA-CL-5917-01 11 18956124 18956124 C T MRGPRX1 Missense_Mutation p.A70T 0.36 tolerated(0.05) benign(0.149) TCGA-CL-5917-01 11 22399217 22399217 G A SLC17A6 Silent p.K560K 0.41 TCGA-CL-5917-01 11 5530318 5530318 C A UBQLN3 Silent p.L157L 0.48 TCGA-CL-5917-01 11 76834878 76834878 G A CAPN5 Missense_Mutation p.V629M 0.53 deleterious(0.01) possibly_damaging(0.482) TCGA-CL-5917-01 12 108686442 108686442 C T CMKLR1 Missense_Mutation p.A100T 0.42 deleterious(0.02) possibly_damaging(0.899) TCGA-CL-5917-01 12 21036537 21036538 - T SLCO1B3 Splice_Site p.X561_splice 0.23 TCGA-CL-5917-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.49 deleterious(0) possibly_damaging(0.479) TCGA-CL-5917-01 12 39713817 39713817 T C KIF21A Splice_Site p.X1224_splice 0.26 TCGA-CL-5917-01 12 41957421 41957421 C T PDZRN4 Silent p.I479I 0.46 TCGA-CL-5917-01 12 48174680 48174680 A G SLC48A1 3'UTR 0.09 TCGA-CL-5917-01 13 111111246 111111246 G A COL4A2 Missense_Mutation p.G521S 0.29 probably_damaging(1) TCGA-CL-5917-01 13 20660174 20660174 A G ZMYM2 3'UTR 0.20 TCGA-CL-5917-01 13 29599667 29599667 G A MTUS2 Missense_Mutation p.A288T 0.20 tolerated(0.28) benign(0.006) TCGA-CL-5917-01 14 24525548 24525548 G A LRRC16B Missense_Mutation p.G271R 0.44 deleterious(0.01) possibly_damaging(0.618) TCGA-CL-5917-01 14 58766536 58766536 G C ARID4A 5'UTR 0.37 TCGA-CL-5917-01 14 65241858 65241858 G A SPTB Silent p.S1609S 0.38 TCGA-CL-5917-01 14 70714442 70714442 G C ADAM21P1 RNA 0.24 TCGA-CL-5917-01 14 72191420 72191420 C T SIPA1L1 Silent p.H1515H 0.08 TCGA-CL-5917-01 14 94756517 94756517 G A SERPINA10 Silent p.P138P 0.43 TCGA-CL-5917-01 15 59397410 59397410 C T CCNB2 5'UTR 0.82 TCGA-CL-5917-01 15 79586424 79586424 G A ANKRD34C Silent p.S266S 0.94 TCGA-CL-5917-01 16 29676667 29676667 G A SPN 3'UTR 0.37 TCGA-CL-5917-01 16 48139124 48139124 C T ABCC12 Missense_Mutation p.V867I 0.28 tolerated(1) benign(0.004) TCGA-CL-5917-01 16 61687702 61687702 G A CDH8 Missense_Mutation p.T737M 0.34 deleterious(0.01) possibly_damaging(0.76) TCGA-CL-5917-01 16 85953744 85953744 C T IRF8 Missense_Mutation p.R340W 0.64 deleterious(0.03) probably_damaging(0.999) TCGA-CL-5917-01 17 18149086 18149086 C T FLII Missense_Mutation p.E1159K 0.86 deleterious(0.01) benign(0.102) TCGA-CL-5917-01 17 67047246 67047246 C T ABCA9 Missense_Mutation p.V8M 0.84 deleterious(0.03) benign(0.304) TCGA-CL-5917-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.83 tolerated(0.13) possibly_damaging(0.631) TCGA-CL-5917-01 17 79094057 79094057 G A AATK Missense_Mutation p.R1227C 0.79 deleterious(0) probably_damaging(0.998) TCGA-CL-5917-01 19 13246330 13246330 G A NACC1 Silent p.T103T 0.45 TCGA-CL-5917-01 19 14003622 14003622 G C C19orf57 Missense_Mutation p.R124G 0.51 tolerated(0.35) benign(0.016) TCGA-CL-5917-01 19 16918475 16918475 C T NWD1 Missense_Mutation p.T1272M 0.46 deleterious(0.03) probably_damaging(0.921) TCGA-CL-5917-01 19 35996856 35996856 A G DMKN Silent p.F357F 0.41 TCGA-CL-5917-01 19 38797632 38797632 T C YIF1B Intron 0.09 TCGA-CL-5917-01 19 44933209 44933209 G A ZNF229 Missense_Mutation p.R583W 0.48 tolerated(0.19) probably_damaging(0.986) TCGA-CL-5917-01 19 4512369 4512369 C T PLIN4 Missense_Mutation p.V521I 0.36 tolerated(0.07) benign(0.295) TCGA-CL-5917-01 19 49002461 49002461 G A LMTK3 Missense_Mutation p.A651V 0.31 benign(0.074) TCGA-CL-5917-01 19 56185420 56185420 C T U2AF2 Missense_Mutation p.R472W 0.53 deleterious(0) probably_damaging(0.937) TCGA-CL-5917-01 19 57647192 57647192 G A ZIM3 Silent p.A171A 0.43 TCGA-CL-5917-01 19 581376 581376 T C BSG Missense_Mutation p.L285P 0.07 deleterious(0) probably_damaging(1) TCGA-CL-5917-01 19 58238805 58238805 G T ZNF671 Missense_Mutation p.A31D 0.34 tolerated(0.17) benign(0.267) TCGA-CL-5917-01 19 58549367 58549367 G A ZSCAN1 Missense_Mutation p.A55T 0.55 deleterious(0) probably_damaging(0.998) TCGA-CL-5917-01 1 236306210 236306212 CTC - GPR137B In_Frame_Del p.S97del 0.40 TCGA-CL-5917-01 1 67109400 67109400 G A SGIP1 Missense_Mutation p.V153M 0.38 tolerated(0.16) probably_damaging(0.986) TCGA-CL-5917-01 1 77634995 77634995 C A PIGK Nonsense_Mutation p.E109* 0.81 TCGA-CL-5917-01 20 1356217 1356217 G C FKBP1A Missense_Mutation p.S39C 0.82 deleterious(0) probably_damaging(0.993) TCGA-CL-5917-01 20 31388033 31388033 G A DNMT3B Missense_Mutation p.A612T 0.35 tolerated(0.29) probably_damaging(0.998) TCGA-CL-5917-01 20 37597768 37597768 C G DHX35 Missense_Mutation p.L29V 0.15 tolerated(0.61) benign(0) TCGA-CL-5917-01 20 47585760 47585760 G A ARFGEF2 Missense_Mutation p.R379H 0.10 deleterious(0) probably_damaging(0.995) TCGA-CL-5917-01 21 38444871 38444871 G A PIGP Missense_Mutation p.T6I 0.73 deleterious_low_confidence(0) benign(0) TCGA-CL-5917-01 21 41033480 41033480 G A B3GALT5 3'UTR 0.85 TCGA-CL-5917-01 2 207827159 207827159 C T CPO Nonsense_Mutation p.Q200* 0.27 TCGA-CL-5917-01 2 218750499 218750499 C T TNS1 Missense_Mutation p.E237K 0.89 deleterious(0) probably_damaging(0.999) TCGA-CL-5917-01 2 238289624 238289624 C T COL6A3 Missense_Mutation p.A611T 0.83 benign(0.153) TCGA-CL-5917-01 2 33810660 33810660 C T FAM98A Silent p.L275L 0.27 TCGA-CL-5917-01 2 71753472 71753472 G A DYSF Silent p.P424P 0.59 TCGA-CL-5917-01 2 86459916 86459916 C A REEP1 Missense_Mutation p.A150S 0.60 deleterious(0.03) possibly_damaging(0.573) TCGA-CL-5917-01 3 140409973 140409973 A T TRIM42 Missense_Mutation p.Y675F 0.37 deleterious(0) probably_damaging(0.999) TCGA-CL-5917-01 3 186507806 186507806 G A RFC4 Silent p.L348L 0.65 TCGA-CL-5917-01 3 52830591 52830591 G A ITIH3 Missense_Mutation p.R70H 0.40 tolerated(0.12) benign(0.052) TCGA-CL-5917-01 4 13602576 13602576 G T BOD1L1 Missense_Mutation p.A1983E 0.36 possibly_damaging(0.804) TCGA-CL-5917-01 4 167983666 167983666 C A SPOCK3 Missense_Mutation p.S74I 0.40 tolerated(0.07) benign(0.439) TCGA-CL-5917-01 4 3495129 3495129 C T DOK7 Silent p.G472G 0.45 TCGA-CL-5917-01 4 74351752 74351752 C T AFM Silent p.C148C 0.47 TCGA-CL-5917-01 4 99214663 99214663 A T RAP1GDS1 Missense_Mutation p.N38Y 0.36 deleterious(0.02) benign(0.008) TCGA-CL-5917-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.47 TCGA-CL-5917-01 5 112175539 112175539 C - APC Frame_Shift_Del p.I1417Lfs*2 0.30 TCGA-CL-5917-01 5 140073238 140073238 C T HARS2 Silent p.I57I 0.45 TCGA-CL-5917-01 5 140799105 140799105 C T PCDHGB7 Missense_Mutation p.P560L 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-CL-5917-01 5 150704916 150704916 G A SLC36A2 Missense_Mutation p.A314V 0.43 deleterious(0) benign(0.151) TCGA-CL-5917-01 5 153026610 153026610 G A GRIA1 Missense_Mutation p.V125I 0.46 tolerated(0.58) benign(0.008) TCGA-CL-5917-01 5 16067614 16067614 G A MARCH11 Missense_Mutation p.S392L 0.40 deleterious(0) possibly_damaging(0.615) TCGA-CL-5917-01 5 16666779 16666779 A T MYO10 3'UTR 0.62 TCGA-CL-5917-01 5 172336688 172336688 C T ERGIC1 Silent p.V58V 0.42 TCGA-CL-5917-01 5 32400255 32400255 C T ZFR Missense_Mutation p.E524K 0.43 tolerated(0.34) unknown(0) TCGA-CL-5917-01 5 66461970 66461970 C T MAST4 Silent p.S2321S 0.57 TCGA-CL-5917-01 6 166580264 166580264 G A T Missense_Mutation p.A96V 0.46 tolerated(0.15) benign(0.158) TCGA-CL-5917-01 6 27834820 27834820 G T HIST1H1B Missense_Mutation p.A163E 0.42 tolerated(1) unknown(0) TCGA-CL-5917-01 7 107315423 107315423 G C SLC26A4 Missense_Mutation p.V212L 0.28 deleterious(0.01) possibly_damaging(0.718) TCGA-CL-5917-01 7 120629709 120629709 C T CPED1 Nonsense_Mutation p.R12* 0.57 TCGA-CL-5917-01 7 139299047 139299047 G A HIPK2 Missense_Mutation p.P659S 0.31 deleterious(0) possibly_damaging(0.829) TCGA-CL-5917-01 7 926225 926225 T C GET4 Missense_Mutation p.L85S 0.56 deleterious(0) probably_damaging(0.999) TCGA-CL-5917-01 7 99145377 99145377 G A FAM200A Silent p.T218T 0.28 TCGA-CL-5917-01 8 103266662 103266662 T G UBR5 Silent p.P2756P 0.69 TCGA-CL-5917-01 8 20110684 20110684 C T LZTS1 Missense_Mutation p.R253H 0.55 tolerated(0.06) probably_damaging(0.968) TCGA-CL-5917-01 8 55534077 55534077 T C RP1 Missense_Mutation p.L184P 0.36 deleterious(0) probably_damaging(1) TCGA-CL-5917-01 9 119033668 119033668 C T PAPPA Nonsense_Mutation p.R976* 0.44 TCGA-CL-5917-01 9 124528809 124528809 G A DAB2IP Silent p.S471S 0.40 TCGA-CL-5917-01 9 130027259 130027259 C T GARNL3 Missense_Mutation p.R35C 0.80 deleterious(0) probably_damaging(0.994) TCGA-CL-5917-01 9 138586279 138586279 G A SOHLH1 Silent p.D300D 0.82 TCGA-CL-5917-01 9 138678150 138678150 C T KCNT1 Silent p.G1095G 0.81 TCGA-CL-5917-01 9 4544601 4544601 C A SLC1A1 Missense_Mutation p.S42R 0.43 tolerated(0.48) possibly_damaging(0.685) TCGA-CL-5917-01 X 119389703 119389703 G C ZBTB33 3'UTR 0.41 TCGA-CL-5917-01 X 123630874 123630874 C A TENM1 Missense_Mutation p.L1229F 0.48 tolerated(0.1) benign(0.084) TCGA-CL-5917-01 X 129377582 129377582 A T ZNF280C Silent p.S112S 0.20 TCGA-CL-5917-01 X 153041435 153041435 C T PLXNB3 Missense_Mutation p.R1522W 0.15 deleterious(0.01) probably_damaging(0.991) TCGA-CL-5917-01 X 153593246 153593246 C T FLNA Missense_Mutation p.V591I 0.43 tolerated(0.05) possibly_damaging(0.61) TCGA-CL-5917-01 X 21674619 21674619 C T KLHL34 Missense_Mutation p.V430I 0.16 tolerated(1) possibly_damaging(0.472) TCGA-CL-5917-01 X 24593379 24593379 A G PCYT1B Silent p.N255N 0.53 TCGA-CL-5917-01 X 24766569 24766570 - T POLA1 Frame_Shift_Ins p.L940Sfs*4 0.13 TCGA-CL-5917-01 X 37430956 37430956 C T LANCL3 5'UTR 0.17 TCGA-CL-5917-01 X 48398300 48398300 C T TBC1D25 Nonsense_Mutation p.R39* 0.17 TCGA-CL-5917-01 X 49143724 49143724 C T PPP1R3F 3'UTR 0.80 TCGA-CL-5917-01 X 54987346 54987346 A T PFKFB1 Missense_Mutation p.F76L 0.48 benign(0.039) TCGA-CL-5917-01 X 57936919 57936919 G A ZXDA 5'UTR 0.22 TCGA-CL-5918-01 10 104176584 104176584 C T PSD Missense_Mutation p.R71H 0.41 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-CL-5918-01 10 120353627 120353627 G A PRLHR 3'UTR 0.45 TCGA-CL-5918-01 10 134598560 134598560 C T NKX6-2 Missense_Mutation p.A232T 0.45 tolerated(0.46) benign(0.174) TCGA-CL-5918-01 10 93261061 93261061 A T HECTD2 Missense_Mutation p.K727I 0.06 deleterious(0) benign(0.17) TCGA-CL-5918-01 11 113815341 113815341 T G HTR3B Silent p.A318A 0.09 TCGA-CL-5918-01 11 118107936 118107936 C T MPZL3 Missense_Mutation p.G94S 0.20 deleterious(0) probably_damaging(0.999) TCGA-CL-5918-01 11 124766530 124766530 A G ROBO4 Missense_Mutation p.M146T 0.22 tolerated(0.84) benign(0.001) TCGA-CL-5918-01 11 133806008 133806008 G A IGSF9B Missense_Mutation p.A254V 0.39 deleterious(0) probably_damaging(0.981) TCGA-CL-5918-01 11 14303176 14303176 C T RRAS2 Missense_Mutation p.A167T 0.38 deleterious(0.03) probably_damaging(0.977) TCGA-CL-5918-01 11 18764922 18764922 C T PTPN5 Missense_Mutation p.A116T 0.39 tolerated_low_confidence(0.1) benign(0.007) TCGA-CL-5918-01 11 27695763 27695763 C A BDNF Missense_Mutation p.E23D 0.43 deleterious_low_confidence(0) benign(0.388) TCGA-CL-5918-01 11 33054223 33054223 C T DEPDC7 Nonsense_Mutation p.R383* 0.42 TCGA-CL-5918-01 11 44950805 44950805 C T TSPAN18 3'UTR 0.41 TCGA-CL-5918-01 11 47353419 47353419 T A MYBPC3 3'UTR 0.38 TCGA-CL-5918-01 11 47435016 47435016 G A SLC39A13 Silent p.P201P 0.52 TCGA-CL-5918-01 11 5153436 5153436 A C OR52A5 Missense_Mutation p.I146S 0.06 deleterious(0) possibly_damaging(0.493) TCGA-CL-5918-01 11 62327107 62327107 C G EEF1G 3'UTR 0.29 TCGA-CL-5918-01 11 6621754 6621754 G A RRP8 Missense_Mutation p.R405W 0.48 deleterious(0) possibly_damaging(0.783) TCGA-CL-5918-01 11 74648093 74648093 C A XRRA1 Missense_Mutation p.V39F 0.05 deleterious(0) benign(0.081) TCGA-CL-5918-01 12 118520062 118520062 G C VSIG10 Silent p.G178G 0.36 TCGA-CL-5918-01 12 124220090 124220090 C T ATP6V0A2 Silent p.H248H 0.09 TCGA-CL-5918-01 12 56975619 56975619 C T RBMS2 Silent p.G245G 0.38 TCGA-CL-5918-01 12 75895659 75895659 T A GLIPR1 3'UTR 0.38 TCGA-CL-5918-01 12 78388626 78388626 G A NAV3 Missense_Mutation p.A239T 0.19 tolerated(0.49) possibly_damaging(0.492) TCGA-CL-5918-01 13 115090225 115090225 C T CHAMP1 Missense_Mutation p.P303L 0.20 tolerated(0.1) probably_damaging(0.999) TCGA-CL-5918-01 13 36223948 36223948 C T NBEA Nonsense_Mutation p.R2622* 0.54 TCGA-CL-5918-01 13 36767778 36767778 G T SOHLH2 Missense_Mutation p.T214K 0.05 tolerated(1) benign(0) TCGA-CL-5918-01 13 39263365 39263365 T A FREM2 Silent p.L628L 0.06 TCGA-CL-5918-01 13 78191742 78191742 A G SCEL Missense_Mutation p.D487G 0.07 tolerated(0.08) benign(0.035) TCGA-CL-5918-01 14 101492090 101492090 T C MIR323A RNA 0.59 TCGA-CL-5918-01 15 23811330 23811330 C T MKRN3 Missense_Mutation p.P134L 0.42 tolerated(0.29) benign(0.008) TCGA-CL-5918-01 15 56385633 56385633 T C RFX7 Silent p.Q1431Q 0.67 TCGA-CL-5918-01 15 75982565 75982565 C T CSPG4 Missense_Mutation p.D281N 0.33 tolerated(0.06) probably_damaging(0.965) TCGA-CL-5918-01 16 30735131 30735131 C T SRCAP Silent p.P1462P 0.39 TCGA-CL-5918-01 16 4802838 4802838 G C ZNF500 Missense_Mutation p.P328A 0.35 tolerated(0.17) probably_damaging(0.964) TCGA-CL-5918-01 16 56670357 56670357 C T MT1M 3'Flank 0.28 TCGA-CL-5918-01 16 71411591 71411591 G A CALB2 Missense_Mutation p.E95K 0.38 deleterious(0.02) benign(0.232) TCGA-CL-5918-01 16 72135085 72135085 G A DHX38 Missense_Mutation p.R460H 0.29 deleterious(0) probably_damaging(0.931) TCGA-CL-5918-01 16 847845 847845 C T CHTF18 Missense_Mutation p.T933M 0.42 tolerated(0.11) benign(0.014) TCGA-CL-5918-01 16 8900170 8900170 T G PMM2 Intron 0.12 TCGA-CL-5918-01 17 1264493 1264493 A G YWHAE Silent p.D157D 0.52 TCGA-CL-5918-01 17 48678509 48678509 C T CACNA1G Missense_Mutation p.R1297C 0.47 deleterious(0) probably_damaging(1) TCGA-CL-5918-01 17 66871863 66871863 C T ABCA8 Missense_Mutation p.R1421Q 0.33 tolerated(0.61) benign(0.06) TCGA-CL-5918-01 17 74289677 74289677 G A QRICH2 Silent p.P211P 0.12 TCGA-CL-5918-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.52 deleterious(0) probably_damaging(0.997) TCGA-CL-5918-01 18 19405615 19405615 G C MIB1 Intron 0.15 TCGA-CL-5918-01 18 29340820 29340820 G A SLC25A52 5'UTR 0.60 TCGA-CL-5918-01 19 10906754 10906754 C T DNM2 Intron 0.46 TCGA-CL-5918-01 19 11527625 11527625 G A RGL3 Missense_Mutation p.R86C 0.32 deleterious(0.04) benign(0.097) TCGA-CL-5918-01 19 12540793 12540793 G C ZNF443 3'UTR 0.24 TCGA-CL-5918-01 19 12866196 12866196 C A BEST2 Missense_Mutation p.L214M 0.39 tolerated(0.46) benign(0.264) TCGA-CL-5918-01 19 18377048 18377048 C G KIAA1683 Silent p.L434L 0.41 TCGA-CL-5918-01 19 22363649 22363649 G T ZNF676 Silent p.S290S 0.10 TCGA-CL-5918-01 19 3547269 3547269 C T MFSD12 Splice_Site p.X341_splice 0.31 TCGA-CL-5918-01 19 42583249 42583249 C T ZNF574 Missense_Mutation p.S164F 0.41 tolerated(0.06) benign(0.047) TCGA-CL-5918-01 19 42584961 42584961 C T ZNF574 Missense_Mutation p.R735C 0.33 deleterious(0.03) possibly_damaging(0.876) TCGA-CL-5918-01 19 43371244 43371244 T C PSG1 3'Flank 0.14 TCGA-CL-5918-01 19 45731466 45731466 C T EXOC3L2 Missense_Mutation p.S50N 0.09 tolerated(0.17) benign(0.017) TCGA-CL-5918-01 19 55098716 55098716 G A LILRA2 Missense_Mutation p.R452H 0.42 deleterious(0.03) benign(0.003) TCGA-CL-5918-01 19 56162681 56162681 C T CCDC106 Missense_Mutation p.R116W 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-CL-5918-01 19 58216252 58216252 C T ZNF154 Missense_Mutation p.M43I 0.36 deleterious(0) probably_damaging(0.932) TCGA-CL-5918-01 19 59011992 59011992 G A SLC27A5 Missense_Mutation p.R422C 0.38 deleterious(0) probably_damaging(0.99) TCGA-CL-5918-01 1 110754500 110754500 G A KCNC4 Missense_Mutation p.E127K 0.26 deleterious(0) probably_damaging(0.998) TCGA-CL-5918-01 1 118170007 118170007 G T FAM46C 3'UTR 0.44 TCGA-CL-5918-01 1 142804465 142804465 G A RP11-423O2.5 RNA 0.22 TCGA-CL-5918-01 1 148202406 148202406 C T PPIAL4D Missense_Mutation p.R19H 0.36 tolerated_low_confidence(0.35) benign(0.001) TCGA-CL-5918-01 1 152187511 152187511 G A HRNR Silent p.H2198H 0.11 TCGA-CL-5918-01 1 152280433 152280433 G C FLG Missense_Mutation p.S2310C 0.30 possibly_damaging(0.7) TCGA-CL-5918-01 1 158656393 158656393 G C SPTA1 5'UTR 0.41 TCGA-CL-5918-01 1 161044047 161044047 G A PVRL4 Nonsense_Mutation p.R373* 0.23 TCGA-CL-5918-01 1 180241067 180241067 G A LHX4 Missense_Mutation p.R235Q 0.55 tolerated(0.12) benign(0.029) TCGA-CL-5918-01 1 203192643 203192643 G A CHIT1 Missense_Mutation p.R154C 0.37 tolerated(0.06) benign(0.144) TCGA-CL-5918-01 1 208211813 208211813 C T PLXNA2 Missense_Mutation p.R1556H 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-CL-5918-01 1 227073296 227073296 C T PSEN2 Silent p.S138S 0.36 TCGA-CL-5918-01 1 237993876 237993876 T G RYR2 Missense_Mutation p.V4901G 0.09 possibly_damaging(0.713) TCGA-CL-5918-01 1 248343421 248343421 T C OR2M2 Missense_Mutation p.M45T 0.35 tolerated(0.06) benign(0.066) TCGA-CL-5918-01 1 25245749 25245749 C T RUNX3 Missense_Mutation p.G190R 0.40 deleterious(0) probably_damaging(1) TCGA-CL-5918-01 1 26300975 26300975 C G PAFAH2 Missense_Mutation p.V309L 0.17 deleterious(0.03) benign(0.101) TCGA-CL-5918-01 1 31346158 31346158 C T SDC3 Missense_Mutation p.R410H 0.47 deleterious(0) unknown(0) TCGA-CL-5918-01 1 34204921 34204921 C T CSMD2 Missense_Mutation p.E690K 0.34 deleterious(0) probably_damaging(0.988) TCGA-CL-5918-01 1 44435855 44435855 C T DPH2 Missense_Mutation p.S3L 0.33 deleterious(0.02) benign(0.296) TCGA-CL-5918-01 1 52991354 52991354 C T ZCCHC11 Missense_Mutation p.G200E 0.42 tolerated_low_confidence(1) benign(0.001) TCGA-CL-5918-01 1 99161077 99161078 CT - SNX7 Frame_Shift_Del p.S216Ffs*28 0.32 TCGA-CL-5918-01 20 60883822 60883822 C T ADRM1 3'UTR 0.67 TCGA-CL-5918-01 20 60909381 60909381 T A LAMA5 Missense_Mutation p.Y867F 0.69 probably_damaging(0.967) TCGA-CL-5918-01 20 61946778 61946778 C T COL20A1 Silent p.D837D 0.15 TCGA-CL-5918-01 21 15889299 15889299 C T SAMSN1 Missense_Mutation p.G133S 0.33 tolerated(1) benign(0.01) TCGA-CL-5918-01 21 33975415 33975415 T A C21orf59 Intron 0.35 TCGA-CL-5918-01 22 22064927 22064927 A T YPEL1 Missense_Mutation p.L36H 0.34 deleterious(0) probably_damaging(0.997) TCGA-CL-5918-01 22 26091119 26091119 G A ADRBK2 Silent p.T366T 0.31 TCGA-CL-5918-01 22 32853314 32853314 G A BPIFC Silent p.V20V 0.32 TCGA-CL-5918-01 2 127950851 127950851 T G CYP27C1 Missense_Mutation p.Y274S 0.47 deleterious(0) probably_damaging(0.993) TCGA-CL-5918-01 2 135884178 135884178 C T RAB3GAP1 Missense_Mutation p.H309Y 0.27 tolerated(0.11) benign(0.105) TCGA-CL-5918-01 2 141245214 141245214 C T LRP1B Missense_Mutation p.R3072K 0.05 benign(0.22) TCGA-CL-5918-01 2 1497656 1497656 C A TPO Missense_Mutation p.S617R 0.41 tolerated(0.38) benign(0.053) TCGA-CL-5918-01 2 158626989 158626989 C A ACVR1 Missense_Mutation p.W227C 0.29 deleterious(0) probably_damaging(1) TCGA-CL-5918-01 2 179456174 179456174 C A TTN Missense_Mutation p.G20093V 0.07 TCGA-CL-5918-01 2 179482201 179482201 G T TTN Missense_Mutation p.Q15871K 0.30 TCGA-CL-5918-01 2 186671833 186671833 A T FSIP2 Missense_Mutation p.I6023F 0.49 probably_damaging(0.972) TCGA-CL-5918-01 2 196913042 196913042 A T DNAH7 Missense_Mutation p.S76R 0.35 tolerated_low_confidence(0.13) benign(0.043) TCGA-CL-5918-01 2 201440162 201440162 T G SGOL2 Missense_Mutation p.F1254V 0.08 deleterious(0.01) benign(0.075) TCGA-CL-5918-01 2 202013858 202013858 A T CFLAR Intron 0.05 TCGA-CL-5918-01 2 219330870 219330870 C A USP37 Missense_Mutation p.D777Y 0.09 deleterious(0) probably_damaging(0.982) TCGA-CL-5918-01 2 220404219 220404219 C T CHPF Silent p.A738A 0.54 TCGA-CL-5918-01 2 228128656 228128656 G A COL4A3 Silent p.P437P 0.33 TCGA-CL-5918-01 2 234774827 234774827 C T MSL3P1 RNA 0.53 TCGA-CL-5918-01 2 238462288 238462288 G A MLPH 3'UTR 0.30 TCGA-CL-5918-01 2 31483747 31483747 C T EHD3 Missense_Mutation p.R292C 0.43 deleterious(0) probably_damaging(0.988) TCGA-CL-5918-01 2 33588553 33588553 C T LTBP1 Missense_Mutation p.T1456M 0.48 tolerated(0.22) probably_damaging(0.945) TCGA-CL-5918-01 2 5835975 5835975 T C SOX11 3'UTR 0.11 TCGA-CL-5918-01 3 123680212 123680212 C A CCDC14 5'UTR 0.45 TCGA-CL-5918-01 3 165548173 165548173 G T BCHE Missense_Mutation p.P217T 0.29 deleterious(0) probably_damaging(0.913) TCGA-CL-5918-01 3 183824299 183824299 G A HTR3E Missense_Mutation p.E423K 0.44 tolerated(0.14) benign(0.081) TCGA-CL-5918-01 3 186445055 186445055 C T KNG1 Silent p.T198T 0.40 TCGA-CL-5918-01 3 37151154 37151154 T A LRRFIP2 Missense_Mutation p.K185M 0.42 deleterious(0.02) possibly_damaging(0.594) TCGA-CL-5918-01 3 37783309 37783309 G A ITGA9 Missense_Mutation p.G775R 0.42 deleterious(0) probably_damaging(0.984) TCGA-CL-5918-01 3 3888602 3888602 C T LRRN1 3'UTR 0.37 TCGA-CL-5918-01 3 48613082 48613082 C T COL7A1 Missense_Mutation p.E1986K 0.41 unknown(0) TCGA-CL-5918-01 3 53919464 53919464 G A SELK 3'UTR 0.43 TCGA-CL-5918-01 3 75787280 75787280 T C ZNF717 Silent p.Q498Q 0.40 TCGA-CL-5918-01 4 10447326 10447326 C A ZNF518B Silent p.T209T 0.42 TCGA-CL-5918-01 4 123246843 123246843 G A KIAA1109 Intron 0.40 TCGA-CL-5918-01 4 13543991 13543991 G A NKX3-2 Missense_Mutation p.R210W 0.40 deleterious(0) probably_damaging(1) TCGA-CL-5918-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.34 TCGA-CL-5918-01 4 166403433 166403433 G T CPE Missense_Mutation p.D238Y 0.05 deleterious(0) probably_damaging(0.964) TCGA-CL-5918-01 4 184614871 184614871 C T TRAPPC11 Silent p.L789L 0.05 TCGA-CL-5918-01 4 187541241 187541241 C G FAT1 Missense_Mutation p.E2167Q 0.05 probably_damaging(0.986) TCGA-CL-5918-01 4 57677869 57677869 G T SPINK2 Missense_Mutation p.T64N 0.41 deleterious(0.03) possibly_damaging(0.856) TCGA-CL-5918-01 4 68472046 68472046 A T STAP1 Nonsense_Mutation p.K287* 0.06 TCGA-CL-5918-01 4 89039396 89039396 G A ABCG2 Nonsense_Mutation p.R236* 0.36 TCGA-CL-5918-01 4 90168874 90168874 A T GPRIN3 3'UTR 0.15 TCGA-CL-5918-01 5 112175271 112175271 C A APC Nonsense_Mutation p.S1327* 0.63 TCGA-CL-5918-01 5 11384809 11384809 G A CTNND2 Missense_Mutation p.T382M 0.25 deleterious(0.04) possibly_damaging(0.715) TCGA-CL-5918-01 5 140480582 140480582 G A PCDHB3 Missense_Mutation p.V117I 0.38 tolerated_low_confidence(0.13) benign(0) TCGA-CL-5918-01 5 140720485 140720485 C T PCDHGA2 Silent p.H649H 0.08 TCGA-CL-5918-01 5 140774316 140774316 G A PCDHGA8 Missense_Mutation p.V646I 0.80 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-CL-5918-01 5 52781730 52781730 G A FST Intron 0.60 TCGA-CL-5918-01 5 96130819 96130819 G A ERAP1 Missense_Mutation p.A282V 0.13 deleterious(0.01) benign(0.422) TCGA-CL-5918-01 6 110424578 110424578 T C WASF1 Intron 0.35 TCGA-CL-5918-01 6 149983274 149983274 C T LATS1 Missense_Mutation p.R995H 0.39 deleterious(0) probably_damaging(1) TCGA-CL-5918-01 6 165809886 165809886 G A PDE10A Silent p.Y447Y 0.07 TCGA-CL-5918-01 6 168227093 168227093 C T MLLT4 5'Flank 0.09 TCGA-CL-5918-01 6 24698112 24698112 T A ACOT13 Missense_Mutation p.I28N 0.18 deleterious(0) benign(0.294) TCGA-CL-5918-01 6 29054978 29054978 G T OR2B3 Silent p.G16G 0.40 TCGA-CL-5918-01 6 31973609 31973609 T A C4A 3'Flank 0.06 TCGA-CL-5918-01 6 35480009 35480009 C T TULP1 Silent p.T46T 0.29 TCGA-CL-5918-01 6 76527363 76527363 C G MYO6 Silent p.P33P 0.32 TCGA-CL-5918-01 6 84799159 84799159 A G MRAP2 Missense_Mutation p.T193A 0.43 tolerated(0.14) benign(0.009) TCGA-CL-5918-01 6 96656019 96656019 C T FUT9 3'UTR 0.33 TCGA-CL-5918-01 6 96656448 96656448 G A FUT9 3'UTR 0.38 TCGA-CL-5918-01 7 101943991 101943991 G A SH2B2 Missense_Mutation p.D96N 0.12 tolerated(0.07) benign(0.275) TCGA-CL-5918-01 7 106964917 106964917 G A COG5 Missense_Mutation p.A390V 0.11 tolerated(0.28) benign(0.001) TCGA-CL-5918-01 7 11676072 11676072 G A THSD7A Missense_Mutation p.T236M 0.58 deleterious(0.01) possibly_damaging(0.701) TCGA-CL-5918-01 7 129962351 129962351 C T CPA4 Silent p.I367I 0.07 TCGA-CL-5918-01 7 139225207 139225207 G C CLEC2L Missense_Mutation p.A136P 0.24 deleterious(0.01) possibly_damaging(0.899) TCGA-CL-5918-01 7 47937659 47937659 C T PKD1L1 Missense_Mutation p.V733M 0.61 deleterious(0) probably_damaging(0.937) TCGA-CL-5918-01 7 53103958 53103958 C T POM121L12 Silent p.F198F 0.54 TCGA-CL-5918-01 7 65157709 65157709 T G INTS4L2 RNA 0.08 TCGA-CL-5918-01 7 7622772 7622772 A C MIOS Missense_Mutation p.N473H 0.09 tolerated(0.54) benign(0.218) TCGA-CL-5918-01 7 95001483 95001483 A G PON3 Splice_Site p.X123_splice 0.31 TCGA-CL-5918-01 7 98592257 98592257 G A TRRAP Silent p.A3351A 0.16 TCGA-CL-5918-01 8 11420487 11420487 G A BLK Splice_Site p.X394_splice 0.29 TCGA-CL-5918-01 8 121322277 121322277 C A COL14A1 Silent p.G1477G 0.23 TCGA-CL-5918-01 8 21903639 21903639 G A FGF17 Silent p.P29P 0.29 TCGA-CL-5918-01 8 2807758 2807758 C T CSMD1 Missense_Mutation p.G3437S 0.25 probably_damaging(0.997) TCGA-CL-5918-01 8 28573707 28573707 C T EXTL3 Missense_Mutation p.P44L 0.54 deleterious(0.04) possibly_damaging(0.786) TCGA-CL-5918-01 8 38109742 38109747 AAAAAG - DDHD2 In_Frame_Del p.K519_R520del 0.15 TCGA-CL-5918-01 8 93004062 93004062 G A RUNX1T1 Nonsense_Mutation p.R277* 0.51 TCGA-CL-5918-01 9 101073478 101073478 C G GABBR2 Missense_Mutation p.A635P 0.24 tolerated(0.18) benign(0.431) TCGA-CL-5918-01 9 130075823 130075823 T C GARNL3 Silent p.I141I 0.08 TCGA-CL-5918-01 9 36246115 36246115 G A GNE Missense_Mutation p.R208C 0.16 deleterious(0) probably_damaging(0.927) TCGA-CL-5918-01 9 6558671 6558671 G A GLDC Missense_Mutation p.P647L 0.30 deleterious(0) probably_damaging(1) TCGA-CL-5918-01 9 84534477 84534477 T C SPATA31D5P RNA 0.31 TCGA-CL-5918-01 9 90301542 90301542 G A DAPK1 Silent p.P767P 0.32 TCGA-CL-5918-01 9 95484999 95484999 G A BICD2 Missense_Mutation p.S182L 0.50 deleterious(0.01) benign(0.396) TCGA-CL-5918-01 X 107979263 107979263 G A IRS4 Silent p.D104D 0.67 TCGA-CL-5918-01 X 140994480 140994480 T G MAGEC1 Missense_Mutation p.S430R 0.07 tolerated_low_confidence(0.12) benign(0) TCGA-CL-5918-01 X 142795459 142795459 G T SPANXN2 Silent p.S73S 0.10 TCGA-CL-5918-01 X 148681229 148681229 C T TMEM185A Missense_Mutation p.G266E 0.61 deleterious(0) possibly_damaging(0.903) TCGA-CL-5918-01 X 152936625 152936625 A G PNCK Missense_Mutation p.F295S 0.08 deleterious(0) probably_damaging(1) TCGA-CL-5918-01 X 30260498 30260498 A G MAGEB4 Silent p.K82K 0.33 TCGA-CL-5918-01 X 34961532 34961532 C T FAM47B Missense_Mutation p.P195L 0.70 tolerated(0.83) benign(0.405) TCGA-CL-5918-01 X 37265463 37265463 G A PRRG1 Intron 0.13 TCGA-CL-5918-01 X 37431229 37431229 G C LANCL3 Missense_Mutation p.E36Q 0.54 tolerated(0.49) benign(0.004) TCGA-CL-5918-01 X 57515466 57515466 C G FAAH2 3'UTR 0.12 TCGA-CL-5918-01 X 62885786 62885786 G T ARHGEF9 Missense_Mutation p.Q346K 0.10 deleterious(0) probably_damaging(0.999) TCGA-CL-5918-01 X 76909629 76909629 G A ATRX Nonsense_Mutation p.R1426* 0.07 TCGA-DC-4745-01 10 65132806 65132806 G C JMJD1C Intron 0.20 TCGA-DC-4745-01 11 1271648 1271648 C T MUC5B Missense_Mutation p.T4513I 0.45 unknown(0) TCGA-DC-4745-01 11 47193109 47193109 C T ARFGAP2 Splice_Site p.X270_splice 0.41 TCGA-DC-4745-01 11 62600591 62600591 C G WDR74 Missense_Mutation p.E331Q 0.19 tolerated(0.1) benign(0.022) TCGA-DC-4745-01 11 93417219 93417219 A G KIAA1731 Missense_Mutation p.M347V 0.30 tolerated(0.18) benign(0.017) TCGA-DC-4745-01 11 94113479 94113479 G T GPR83 Missense_Mutation p.Q370K 0.38 tolerated(0.4) benign(0.004) TCGA-DC-4745-01 12 103260399 103260399 C A PAH Missense_Mutation p.A162S 0.39 tolerated(0.08) probably_damaging(1) TCGA-DC-4745-01 12 26277684 26277684 T A BHLHE41 Missense_Mutation p.E10V 0.44 deleterious(0) possibly_damaging(0.806) TCGA-DC-4745-01 12 26277745 26277745 T A BHLHE41 5'UTR 0.44 TCGA-DC-4745-01 12 60098665 60098665 T G SLC16A7 Missense_Mutation p.I28S 0.32 deleterious(0) probably_damaging(0.91) TCGA-DC-4745-01 12 6940409 6940409 G A LEPREL2 Missense_Mutation p.V338I 0.22 deleterious(0.01) benign(0.005) TCGA-DC-4745-01 12 7475019 7475019 A T ACSM4 Missense_Mutation p.K336I 0.71 deleterious(0) benign(0.242) TCGA-DC-4745-01 12 86198331 86198331 C T RASSF9 3'UTR 0.38 TCGA-DC-4745-01 13 46918924 46918924 T G KIAA0226L Missense_Mutation p.T610P 0.14 tolerated(0.15) benign(0.029) TCGA-DC-4745-01 14 63174832 63174832 G A KCNH5 Silent p.N787N 0.39 TCGA-DC-4745-01 14 81209566 81209566 T C CEP128 Missense_Mutation p.R887G 0.08 deleterious(0.02) benign(0.008) TCGA-DC-4745-01 14 94079309 94079309 G A UNC79 Silent p.T1130T 0.67 TCGA-DC-4745-01 15 25220541 25220541 G A SNRPN Missense_Mutation p.D14N 0.07 tolerated(1) benign(0.04) TCGA-DC-4745-01 15 42298245 42298245 G A PLA2G4E Silent p.D156D 0.10 TCGA-DC-4745-01 16 20335413 20335413 T A GP2 Missense_Mutation p.K87I 0.41 tolerated(0.13) benign(0.002) TCGA-DC-4745-01 16 28508771 28508771 T A APOBR Missense_Mutation p.H803Q 0.41 tolerated(0.23) benign(0.402) TCGA-DC-4745-01 16 28912182 28912182 C T ATP2A1 Missense_Mutation p.S682L 0.47 deleterious(0.04) benign(0.212) TCGA-DC-4745-01 16 51174887 51174887 A C SALL1 Missense_Mutation p.L416V 0.37 tolerated(0.06) possibly_damaging(0.667) TCGA-DC-4745-01 16 86601317 86601317 C G FOXC2 Missense_Mutation p.L126V 0.38 deleterious(0) probably_damaging(0.994) TCGA-DC-4745-01 17 43322363 43322363 G A FMNL1 Silent p.S872S 0.08 TCGA-DC-4745-01 17 7320642 7320642 G A NLGN2 Missense_Mutation p.V678I 0.63 tolerated(0.13) possibly_damaging(0.897) TCGA-DC-4745-01 17 7411785 7411785 G A POLR2A Silent p.E1152E 0.16 TCGA-DC-4745-01 17 7578392 7578392 C A TP53 Nonsense_Mutation p.E180* 0.56 TCGA-DC-4745-01 18 40854079 40854079 A - SYT4 Frame_Shift_Del p.T108Pfs*20 0.34 TCGA-DC-4745-01 19 1233558 1233558 G A C19orf26 Silent p.S282S 0.25 TCGA-DC-4745-01 19 14826964 14826964 C A ZNF333 Missense_Mutation p.P214Q 0.06 tolerated(0.72) probably_damaging(0.942) TCGA-DC-4745-01 19 1556836 1556836 C T MEX3D Missense_Mutation p.G228S 0.31 deleterious(0.04) benign(0.262) TCGA-DC-4745-01 19 39068567 39068567 A G RYR1 Missense_Mutation p.K4728E 0.08 unknown(0) TCGA-DC-4745-01 19 4318416 4318416 C T FSD1 Silent p.D291D 0.31 TCGA-DC-4745-01 19 49898413 49898413 C T CCDC155 Nonsense_Mutation p.Q67* 0.09 TCGA-DC-4745-01 19 50104818 50104818 G A PRR12 Silent p.P1472P 0.53 TCGA-DC-4745-01 19 9075389 9075389 G A MUC16 Silent p.D4019D 0.29 TCGA-DC-4745-01 1 118165467 118165467 C - FAM46C 5'UTR 0.40 TCGA-DC-4745-01 1 1273909 1273909 G A DVL1 Silent p.A419A 0.48 TCGA-DC-4745-01 1 147091037 147091037 G A BCL9 Missense_Mutation p.R359Q 0.32 deleterious(0) probably_damaging(0.986) TCGA-DC-4745-01 1 147091501 147091501 C - BCL9 Frame_Shift_Del p.P516Lfs*5 0.33 TCGA-DC-4745-01 1 152882414 152882414 G T IVL Silent p.V47V 0.39 TCGA-DC-4745-01 1 155448418 155448418 G A ASH1L Missense_Mutation p.P1415S 0.45 tolerated_low_confidence(0.18) probably_damaging(0.999) TCGA-DC-4745-01 1 196659273 196659273 G A CFH Missense_Mutation p.V414I 0.25 tolerated(0.12) benign(0.208) TCGA-DC-4745-01 1 227239647 227239647 C T CDC42BPA Intron 0.25 TCGA-DC-4745-01 1 23637753 23637753 C T HNRNPR Silent p.K413K 0.11 TCGA-DC-4745-01 1 236736058 236736058 A G HEATR1 Missense_Mutation p.V1177A 0.34 deleterious(0.02) benign(0.362) TCGA-DC-4745-01 1 248402343 248402343 C A OR2M4 Missense_Mutation p.A38E 0.42 deleterious(0) possibly_damaging(0.852) TCGA-DC-4745-01 1 26136281 26136281 G A SEPN1 Missense_Mutation p.R327H 0.42 tolerated(0.13) benign(0.14) TCGA-DC-4745-01 1 37947226 37947228 AGA - ZC3H12A In_Frame_Del p.K206del 0.38 TCGA-DC-4745-01 20 25271122 25271122 G A PYGB Silent p.A611A 0.22 TCGA-DC-4745-01 20 37353563 37353563 G A SLC32A1 Missense_Mutation p.E66K 0.23 tolerated(0.11) benign(0.016) TCGA-DC-4745-01 20 41419939 41419939 C T PTPRT Missense_Mutation p.G128S 0.22 deleterious(0.05) probably_damaging(0.976) TCGA-DC-4745-01 20 43243263 43243263 G A PKIG Silent p.A22A 0.10 TCGA-DC-4745-01 21 10996087 10996087 G A TPTE RNA 0.15 TCGA-DC-4745-01 22 38864244 38864244 C A KDELR3 Missense_Mutation p.N2K 0.47 deleterious(0) possibly_damaging(0.819) TCGA-DC-4745-01 22 46749765 46749765 G A TRMU Splice_Site p.X291_splice 0.12 TCGA-DC-4745-01 22 50960963 50960963 C T NCAPH2 Missense_Mutation p.P448L 0.09 tolerated(0.14) benign(0.044) TCGA-DC-4745-01 2 179647001 179647001 G A TTN Silent p.G1106G 0.25 TCGA-DC-4745-01 2 190445224 190445224 A C SLC40A1 5'UTR 0.35 TCGA-DC-4745-01 2 26683738 26683738 G A OTOF Silent p.N1898N 0.34 TCGA-DC-4745-01 2 26998045 26998045 C T SLC35F6 Missense_Mutation p.A95V 0.45 deleterious(0) possibly_damaging(0.881) TCGA-DC-4745-01 2 33045962 33045962 C T TTC27 Missense_Mutation p.T830I 0.30 tolerated(0.18) benign(0.002) TCGA-DC-4745-01 2 44079542 44079542 G A ABCG8 Missense_Mutation p.R204H 0.08 deleterious(0.02) benign(0.248) TCGA-DC-4745-01 2 55535975 55535975 C T CCDC88A Missense_Mutation p.G1452S 0.37 tolerated(0.39) benign(0.026) TCGA-DC-4745-01 2 74784252 74784252 A G DOK1 3'UTR 0.14 TCGA-DC-4745-01 3 151156159 151156159 C T IGSF10 Missense_Mutation p.G2064S 0.31 deleterious(0) probably_damaging(1) TCGA-DC-4745-01 3 15531087 15531087 G A COLQ Missense_Mutation p.T55M 0.55 tolerated_low_confidence(0.14) benign(0.411) TCGA-DC-4745-01 3 183975500 183975500 G A ECE2 Missense_Mutation p.V146M 0.28 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-DC-4745-01 3 184081311 184081311 G A POLR2H Missense_Mutation p.D11N 0.22 tolerated(0.57) benign(0.006) TCGA-DC-4745-01 3 49160800 49160800 T A LAMB2 Missense_Mutation p.Y1330F 0.26 tolerated(0.53) benign(0.071) TCGA-DC-4745-01 4 30725539 30725539 C T PCDH7 Missense_Mutation p.T832M 0.31 deleterious(0.05) possibly_damaging(0.851) TCGA-DC-4745-01 4 85694044 85694044 G A WDFY3 Missense_Mutation p.A1598V 0.05 tolerated(0.07) benign(0.09) TCGA-DC-4745-01 5 112175216 112175216 G T APC Nonsense_Mutation p.E1309* 0.80 TCGA-DC-4745-01 5 17275509 17275509 G A BASP1 Missense_Mutation p.A62T 0.19 tolerated(0.05) unknown(0) TCGA-DC-4745-01 6 151671349 151671349 C A AKAP12 Missense_Mutation p.T608N 0.31 deleterious(0) probably_damaging(1) TCGA-DC-4745-01 6 43013029 43013029 G A CUL7 Missense_Mutation p.R1076W 0.15 deleterious(0.03) possibly_damaging(0.479) TCGA-DC-4745-01 6 57512623 57512623 C T PRIM2 3'UTR 0.30 TCGA-DC-4745-01 6 75865564 75865564 C T COL12A1 Missense_Mutation p.R1086Q 0.32 benign(0.014) TCGA-DC-4745-01 7 100082951 100082951 G A NYAP1 Missense_Mutation p.R6Q 0.72 tolerated(0.1) probably_damaging(0.996) TCGA-DC-4745-01 7 134632379 134632379 C T CALD1 Silent p.F551F 0.12 TCGA-DC-4745-01 7 142659425 142659425 C T KEL 5'UTR 0.27 TCGA-DC-4745-01 7 50023098 50023098 C G ZPBP Missense_Mutation p.E267D 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-DC-4745-01 7 69064859 69064859 C T AUTS2 Missense_Mutation p.R74W 0.23 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-DC-4745-01 7 72884802 72884802 G A BAZ1B Missense_Mutation p.R869C 0.30 deleterious(0) benign(0.004) TCGA-DC-4745-01 8 99441117 99441117 C T KCNS2 Missense_Mutation p.R304C 0.40 deleterious(0) probably_damaging(0.998) TCGA-DC-4745-01 9 100000769 100000769 G A CCDC180 5'Flank 0.36 TCGA-DC-4745-01 9 138516117 138516117 C T GLT6D1 Silent p.P219P 0.37 TCGA-DC-4745-01 9 990418 990418 C G DMRT3 Missense_Mutation p.L278V 0.26 tolerated(0.52) probably_damaging(0.973) TCGA-DC-4745-01 X 144909061 144909061 C T TMEM257 5'UTR 0.50 TCGA-DC-4745-01 X 153049823 153049823 G A SRPK3 Missense_Mutation p.A408T 0.63 deleterious(0) possibly_damaging(0.857) TCGA-DC-4745-01 X 153227717 153227717 C T HCFC1 Silent p.A251A 0.28 TCGA-DC-4745-01 X 17819079 17819079 C T RAI2 Missense_Mutation p.R351Q 0.21 deleterious(0.01) unknown(0) TCGA-DC-4745-01 X 27839684 27839684 C T MAGEB10 Silent p.N87N 0.09 TCGA-DC-4745-01 X 31144765 31144765 C A DMD Missense_Mutation p.M3680I 0.39 benign(0.043) TCGA-DC-4745-01 X 55290326 55290326 T G PAGE3 Missense_Mutation p.H4P 0.57 deleterious(0.02) benign(0.164) TCGA-DC-4745-01 X 68725982 68725982 G T FAM155B Missense_Mutation p.C286F 0.30 deleterious(0) probably_damaging(0.983) TCGA-DC-4749-01 10 135053221 135053221 C T VENTX Missense_Mutation p.R95C 0.51 tolerated(0.06) possibly_damaging(0.808) TCGA-DC-4749-01 10 135095784 135095784 G A TUBGCP2 Silent p.T812T 0.31 TCGA-DC-4749-01 10 45959710 45959710 C T MARCH8 Silent p.T73T 0.52 TCGA-DC-4749-01 10 78846279 78846279 G A KCNMA1 Silent p.S469S 0.44 TCGA-DC-4749-01 11 1269212 1269212 C G MUC5B Missense_Mutation p.T3701S 0.41 unknown(0) TCGA-DC-4749-01 11 30033733 30033733 C T KCNA4 Missense_Mutation p.G165S 0.38 tolerated(0.21) benign(0.296) TCGA-DC-4749-01 11 58921022 58921022 A G FAM111A 3'UTR 0.38 TCGA-DC-4749-01 11 64662648 64662648 C T ATG2A Missense_Mutation p.V1872M 0.42 deleterious(0) probably_damaging(0.99) TCGA-DC-4749-01 11 6891606 6891606 C T OR10A2 Silent p.H207H 0.45 TCGA-DC-4749-01 12 47472930 47472930 T C AMIGO2 Intron 0.14 TCGA-DC-4749-01 12 57569841 57569841 G T LRP1 Missense_Mutation p.D1315Y 0.59 probably_damaging(1) TCGA-DC-4749-01 12 77438507 77438507 C T E2F7 Missense_Mutation p.V300I 0.22 deleterious(0.02) probably_damaging(0.946) TCGA-DC-4749-01 12 88483024 88483024 G A CEP290 Nonsense_Mutation p.R1272* 0.30 TCGA-DC-4749-01 13 36801427 36801427 T C CCDC169 Missense_Mutation p.R213G 0.80 deleterious_low_confidence(0.01) unknown(0) TCGA-DC-4749-01 15 42149120 42149120 C T SPTBN5 Silent p.L2913L 0.30 TCGA-DC-4749-01 15 75703881 75703881 G A SIN3A Silent p.G320G 0.37 TCGA-DC-4749-01 15 75703882 75703882 C T SIN3A Missense_Mutation p.G320D 0.37 tolerated(0.58) probably_damaging(1) TCGA-DC-4749-01 15 89010494 89010494 A G MRPL46 Missense_Mutation p.S39P 0.08 tolerated(0.17) benign(0.368) TCGA-DC-4749-01 16 16248830 16248830 C T ABCC6 Missense_Mutation p.R1314Q 0.43 deleterious(0) probably_damaging(1) TCGA-DC-4749-01 16 19567058 19567058 G A C16orf62 Missense_Mutation p.V92I 0.37 tolerated(0.19) benign(0.016) TCGA-DC-4749-01 16 29916194 29916194 G C ASPHD1 Missense_Mutation p.C324S 0.50 tolerated(0.05) possibly_damaging(0.667) TCGA-DC-4749-01 16 4432065 4432065 C A VASN Missense_Mutation p.A396D 0.19 tolerated(0.17) benign(0.005) TCGA-DC-4749-01 16 50745472 50745472 G A NOD2 Silent p.L550L 0.54 TCGA-DC-4749-01 16 56667303 56667303 C A MT1M Missense_Mutation p.T27N 0.48 deleterious(0) possibly_damaging(0.728) TCGA-DC-4749-01 16 71799457 71799457 T C AP1G1 Missense_Mutation p.N228D 0.08 tolerated(0.06) benign(0.007) TCGA-DC-4749-01 16 81190538 81190538 C T PKD1L2 RNA 0.30 TCGA-DC-4749-01 17 26966632 26966632 T C KIAA0100 Silent p.Q348Q 0.25 TCGA-DC-4749-01 17 40720953 40720953 G A MLX Missense_Mutation p.A144T 0.62 deleterious(0.01) probably_damaging(0.989) TCGA-DC-4749-01 17 41930370 41930370 C T CD300LG Missense_Mutation p.P157L 0.30 tolerated(0.23) benign(0.007) TCGA-DC-4749-01 17 7230999 7230999 G A NEURL4 Missense_Mutation p.R163C 0.77 deleterious(0) possibly_damaging(0.907) TCGA-DC-4749-01 17 73000074 73000074 G A CDR2L Missense_Mutation p.E435K 0.25 deleterious(0) probably_damaging(0.997) TCGA-DC-4749-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.74 deleterious(0) probably_damaging(1) TCGA-DC-4749-01 19 12060514 12060514 A G ZNF700 Missense_Mutation p.T559A 0.12 deleterious(0) possibly_damaging(0.843) TCGA-DC-4749-01 19 16038110 16038110 C T CYP4F11 Missense_Mutation p.R146H 0.44 tolerated(0.25) benign(0.179) TCGA-DC-4749-01 19 21132163 21132163 T C ZNF85 Silent p.T281T 0.36 TCGA-DC-4749-01 19 2269526 2269526 G A OAZ1 5'UTR 0.48 TCGA-DC-4749-01 19 2269549 2269549 G A OAZ1 5'UTR 0.46 TCGA-DC-4749-01 19 2269649 2269649 G C OAZ1 Missense_Mutation p.E18Q 0.46 deleterious(0) probably_damaging(0.998) TCGA-DC-4749-01 19 35801001 35801001 G A MAG Missense_Mutation p.V486I 0.50 tolerated(0.4) benign(0.033) TCGA-DC-4749-01 19 37369633 37369633 A G ZNF345 3'UTR 0.46 TCGA-DC-4749-01 19 40889933 40889933 G A HIPK4 Silent p.C193C 0.32 TCGA-DC-4749-01 19 43237060 43237060 C A PSG3 Missense_Mutation p.L195F 0.07 deleterious(0.02) probably_damaging(0.914) TCGA-DC-4749-01 19 45801437 45801437 C G MARK4 Intron 0.34 TCGA-DC-4749-01 1 160385686 160385686 C T VANGL2 Missense_Mutation p.S20F 0.47 deleterious(0) unknown(0) TCGA-DC-4749-01 1 176903424 176903424 A - ASTN1 Frame_Shift_Del p.F845Lfs*64 0.30 TCGA-DC-4749-01 1 196801131 196801131 A G CFHR1 3'UTR 0.33 TCGA-DC-4749-01 1 205899065 205899065 G A SLC26A9 Silent p.F224F 0.34 TCGA-DC-4749-01 1 2235927 2235927 A T SKI Missense_Mutation p.E557V 0.83 deleterious(0) probably_damaging(0.996) TCGA-DC-4749-01 1 25551579 25551579 A G SYF2 Silent p.F160F 0.71 TCGA-DC-4749-01 1 34180219 34180219 C T CSMD2 Missense_Mutation p.R1085H 0.83 tolerated(0.06) possibly_damaging(0.646) TCGA-DC-4749-01 20 1106291 1106291 C T PSMF1 Silent p.L94L 0.32 TCGA-DC-4749-01 20 18794913 18794913 G T SCP2D1 Missense_Mutation p.D152Y 0.34 deleterious(0) possibly_damaging(0.613) TCGA-DC-4749-01 20 35068221 35068221 G T DLGAP4 Missense_Mutation p.D436Y 0.65 deleterious(0.02) benign(0.203) TCGA-DC-4749-01 20 51870967 51870967 G A TSHZ2 Missense_Mutation p.V324I 0.71 tolerated(0.05) benign(0.006) TCGA-DC-4749-01 21 37504823 37504823 G A CBR3 5'Flank 0.22 TCGA-DC-4749-01 22 26423093 26423093 C T MYO18B Missense_Mutation p.R2385W 0.41 deleterious(0.01) probably_damaging(0.953) TCGA-DC-4749-01 22 38528944 38528944 G A PLA2G6 Missense_Mutation p.A324V 0.21 tolerated(0.11) benign(0.426) TCGA-DC-4749-01 22 50616136 50616136 C T PANX2 Missense_Mutation p.T332M 0.15 deleterious(0) probably_damaging(0.998) TCGA-DC-4749-01 22 50714336 50714336 C T AL022328.1 Missense_Mutation p.R52C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-DC-4749-01 2 121744157 121744157 C T GLI2 Missense_Mutation p.R754W 0.52 deleterious(0) probably_damaging(0.997) TCGA-DC-4749-01 2 17692029 17692029 A G RAD51AP2 3'UTR 0.20 TCGA-DC-4749-01 2 18758135 18758135 T C NT5C1B Missense_Mutation p.T410A 0.17 deleterious(0.03) probably_damaging(0.98) TCGA-DC-4749-01 2 192863886 192863886 G A TMEFF2 Silent p.C195C 0.58 TCGA-DC-4749-01 2 233164 233164 C T SH3YL1 Missense_Mutation p.G157E 0.23 deleterious(0) probably_damaging(0.994) TCGA-DC-4749-01 2 48066032 48066032 G A FBXO11 Missense_Mutation p.R185C 0.29 deleterious(0) possibly_damaging(0.895) TCGA-DC-4749-01 2 5841427 5841427 T C SOX11 3'UTR 0.28 TCGA-DC-4749-01 2 67631283 67631283 T C ETAA1 Missense_Mutation p.I490T 0.08 tolerated(0.52) benign(0.041) TCGA-DC-4749-01 3 47452496 47452496 C T PTPN23 Nonsense_Mutation p.R1070* 0.27 TCGA-DC-4749-01 3 73433788 73433788 G A PDZRN3 Silent p.C643C 0.10 TCGA-DC-4749-01 4 13615190 13615190 C T BOD1L1 Missense_Mutation p.E424K 0.33 probably_damaging(0.998) TCGA-DC-4749-01 4 66230777 66230777 C G EPHA5 Missense_Mutation p.D732H 0.46 deleterious(0.01) possibly_damaging(0.852) TCGA-DC-4749-01 4 8607830 8607830 G A CPZ Missense_Mutation p.R275H 0.42 deleterious(0) probably_damaging(0.989) TCGA-DC-4749-01 5 110436330 110436330 T C WDR36 Missense_Mutation p.I207T 0.20 deleterious(0.01) possibly_damaging(0.613) TCGA-DC-4749-01 5 112162891 112162891 C T APC Nonsense_Mutation p.R499* 0.32 TCGA-DC-4749-01 5 112175576 112175576 C T APC Nonsense_Mutation p.Q1429* 0.36 TCGA-DC-4749-01 5 122335695 122335695 G A SNX24 Missense_Mutation p.S113N 0.25 tolerated(0.1) probably_damaging(0.986) TCGA-DC-4749-01 5 161281197 161281197 A G GABRA1 Silent p.K36K 0.10 TCGA-DC-4749-01 5 176833032 176833032 A G F12 Missense_Mutation p.F49S 0.49 deleterious(0) probably_damaging(1) TCGA-DC-4749-01 5 5232549 5232549 G A ADAMTS16 Silent p.S590S 0.26 TCGA-DC-4749-01 5 5242271 5242271 G A ADAMTS16 Missense_Mutation p.V877M 0.24 tolerated(0.08) benign(0.1) TCGA-DC-4749-01 5 67591123 67591125 GCT - PIK3R1 In_Frame_Del p.L573del 0.52 TCGA-DC-4749-01 6 107811817 107811817 A C SOBP 5'UTR 0.22 TCGA-DC-4749-01 6 108042077 108042077 T C SCML4 Missense_Mutation p.Y268C 0.31 tolerated(0.09) benign(0.009) TCGA-DC-4749-01 6 112430673 112430673 G A LAMA4 Silent p.G1813G 0.09 TCGA-DC-4749-01 6 152763322 152763322 G A SYNE1 Missense_Mutation p.A1299V 0.55 benign(0.022) TCGA-DC-4749-01 6 160230077 160230077 C T PNLDC1 Missense_Mutation p.R213C 0.57 deleterious(0) probably_damaging(0.988) TCGA-DC-4749-01 6 33768873 33768873 G A MLN Missense_Mutation p.T23M 0.09 deleterious(0.04) benign(0.146) TCGA-DC-4749-01 6 42036252 42036252 G A TAF8 Silent p.P229P 0.05 TCGA-DC-4749-01 7 112423892 112423892 T A TMEM168 Missense_Mutation p.Y330F 0.19 tolerated(0.55) probably_damaging(0.994) TCGA-DC-4749-01 7 150269531 150269531 C T GIMAP4 Missense_Mutation p.R125C 0.47 deleterious(0.03) possibly_damaging(0.584) TCGA-DC-4749-01 7 155301697 155301697 C T CNPY1 Silent p.T12T 0.35 TCGA-DC-4749-01 7 2687155 2687155 G A TTYH3 Missense_Mutation p.R170K 0.32 tolerated(1) benign(0.006) TCGA-DC-4749-01 7 2959068 2959068 G A CARD11 Silent p.C816C 0.42 TCGA-DC-4749-01 7 43484983 43484983 G A HECW1 Missense_Mutation p.D738N 0.16 deleterious_low_confidence(0) possibly_damaging(0.467) TCGA-DC-4749-01 7 48318808 48318808 T C ABCA13 Silent p.L2673L 0.10 TCGA-DC-4749-01 7 57522280 57522280 C A ZNF716 Missense_Mutation p.L52M 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DC-4749-01 8 125015558 125015558 G A FER1L6 Silent p.P557P 0.51 TCGA-DC-4749-01 8 125567990 125567990 A G MTSS1 Silent p.P520P 0.10 TCGA-DC-4749-01 8 30702862 30702862 G A TEX15 Silent p.D1224D 0.53 TCGA-DC-4749-01 8 30705887 30705887 G A TEX15 Missense_Mutation p.T216M 0.52 tolerated(1) benign(0.002) TCGA-DC-4749-01 8 35647995 35647995 G C UNC5D Missense_Mutation p.G926R 0.27 deleterious(0) probably_damaging(0.988) TCGA-DC-4749-01 8 39534957 39534957 A G ADAM18 Silent p.Q511Q 0.38 TCGA-DC-4749-01 9 2718088 2718088 G A KCNV2 Missense_Mutation p.G117S 0.19 tolerated(0.4) benign(0.001) TCGA-DC-4749-01 X 109919566 109919566 C A CHRDL1 Nonsense_Mutation p.G424* 0.15 TCGA-DC-4749-01 X 75003857 75003857 C A MAGEE2 Nonsense_Mutation p.E344* 0.86 TCGA-DC-5337-01 10 108432721 108432721 G A SORCS1 Missense_Mutation p.R655C 0.41 deleterious(0) probably_damaging(0.954) TCGA-DC-5337-01 10 25138752 25138752 T C PRTFDC1 3'UTR 0.27 TCGA-DC-5337-01 10 27311604 27311604 G A ANKRD26 Silent p.L1366L 0.34 TCGA-DC-5337-01 10 99329964 99329964 C T UBTD1 Missense_Mutation p.P123L 0.47 deleterious(0) probably_damaging(0.999) TCGA-DC-5337-01 11 122848537 122848537 G A BSX Silent p.D174D 0.10 TCGA-DC-5337-01 11 33065440 33065440 A G TCP11L1 Missense_Mutation p.K41E 0.32 tolerated(0.24) benign(0.055) TCGA-DC-5337-01 11 46564857 46564857 G A AMBRA1 Missense_Mutation p.T237M 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.571) TCGA-DC-5337-01 12 106804719 106804719 G A POLR3B Missense_Mutation p.R361Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-DC-5337-01 12 113266158 113266158 G A RPH3A Missense_Mutation p.R12H 0.32 deleterious(0) probably_damaging(0.976) TCGA-DC-5337-01 12 125591727 125591727 C G AACS Missense_Mutation p.F276L 0.52 deleterious(0) benign(0.424) TCGA-DC-5337-01 12 21693450 21693450 G A GYS2 Missense_Mutation p.T568I 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-DC-5337-01 12 30822191 30822192 - A IPO8 Frame_Shift_Ins p.S357Ffs*6 0.16 TCGA-DC-5337-01 12 49231064 49231064 A G DDX23 Missense_Mutation p.L289P 0.39 deleterious(0) probably_damaging(0.928) TCGA-DC-5337-01 12 49231065 49231065 G T DDX23 Missense_Mutation p.L289M 0.38 deleterious(0.02) possibly_damaging(0.507) TCGA-DC-5337-01 12 53586991 53587029 CTGTCCACTGCAGCTGCAGCGTCCACATTGACAGTGACC - ITGB7 In_Frame_Del p.G541_Q553del 0.44 TCGA-DC-5337-01 12 54792386 54792386 G A ITGA5 Missense_Mutation p.R980C 0.37 tolerated(0.18) benign(0.007) TCGA-DC-5337-01 12 56234594 56234594 C T MMP19 Missense_Mutation p.R126Q 0.30 tolerated(0.12) benign(0.43) TCGA-DC-5337-01 12 67692814 67692814 C T CAND1 Silent p.Y313Y 0.33 TCGA-DC-5337-01 12 70004881 70004881 C A LRRC10 5'UTR 0.31 TCGA-DC-5337-01 12 8926455 8926455 A G RIMKLB 3'UTR 0.10 TCGA-DC-5337-01 13 25066720 25066720 C T PARP4 Missense_Mutation p.E298K 0.36 deleterious(0) probably_damaging(0.99) TCGA-DC-5337-01 13 35733400 35733401 - A NBEA Frame_Shift_Ins p.V1033Sfs*4 0.31 TCGA-DC-5337-01 14 33293351 33293351 C T AKAP6 Missense_Mutation p.S2111L 0.28 deleterious(0) probably_damaging(0.996) TCGA-DC-5337-01 14 71444183 71444183 C T PCNX Missense_Mutation p.R377W 0.39 deleterious(0) probably_damaging(0.999) TCGA-DC-5337-01 14 86094184 86094184 G A FLRT2 3'UTR 0.36 TCGA-DC-5337-01 15 50782647 50782647 C A USP8 Missense_Mutation p.P720Q 0.45 deleterious(0) probably_damaging(0.994) TCGA-DC-5337-01 15 65219113 65219113 C T ANKDD1A Missense_Mutation p.A162V 0.23 tolerated(0.11) probably_damaging(0.938) TCGA-DC-5337-01 15 67664873 67664873 G A IQCH Missense_Mutation p.R393H 0.23 deleterious(0.02) benign(0.201) TCGA-DC-5337-01 15 68613809 68613809 C T ITGA11 Silent p.E785E 0.24 TCGA-DC-5337-01 15 92671650 92671650 C A SLCO3A1 Silent p.S481S 0.39 TCGA-DC-5337-01 16 1396237 1396237 G T BAIAP3 Missense_Mutation p.A825S 0.21 tolerated(0.71) benign(0.066) TCGA-DC-5337-01 16 16357002 16357002 C T NOMO3 Silent p.T489T 0.37 TCGA-DC-5337-01 16 18804649 18804649 G T ARL6IP1 Silent p.I179I 0.28 TCGA-DC-5337-01 16 23700038 23700038 G A PLK1 Nonsense_Mutation p.W414* 0.39 TCGA-DC-5337-01 16 33020659 33020659 C A IGHV3OR16-8 Missense_Mutation p.L23M 0.25 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-DC-5337-01 16 87870233 87870233 G A SLC7A5 Silent p.Y387Y 0.44 TCGA-DC-5337-01 17 13400068 13400068 G A HS3ST3A1 Missense_Mutation p.R223W 0.22 deleterious(0) benign(0.096) TCGA-DC-5337-01 17 27448723 27448723 C T MYO18A Missense_Mutation p.D405N 0.38 deleterious(0.03) benign(0.052) TCGA-DC-5337-01 17 3030389 3030389 C G OR1G1 Missense_Mutation p.A153P 0.40 tolerated(0.2) possibly_damaging(0.505) TCGA-DC-5337-01 17 51900732 51900732 C T KIF2B Missense_Mutation p.T113M 0.42 tolerated(0.15) benign(0.052) TCGA-DC-5337-01 17 56676375 56676376 CT - TEX14 Frame_Shift_Del p.E783Vfs*52 0.28 TCGA-DC-5337-01 17 6377779 6377779 G A PITPNM3 Missense_Mutation p.R411W 0.33 deleterious(0) probably_damaging(1) TCGA-DC-5337-01 17 6919186 6919186 A G C17orf49 Silent p.E70E 0.37 TCGA-DC-5337-01 17 70119814 70119815 - GT SOX9 Frame_Shift_Ins p.D274Wfs*6 0.30 TCGA-DC-5337-01 17 76506523 76506523 G A DNAH17 Silent p.Y1389Y 0.31 TCGA-DC-5337-01 17 79813416 79813416 C T P4HB Silent p.T133T 0.46 TCGA-DC-5337-01 18 28711744 28711744 C T DSC1 Missense_Mutation p.G767D 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-DC-5337-01 18 34289257 34289257 C T FHOD3 Silent p.N637N 0.15 TCGA-DC-5337-01 18 6138291 6138291 C T L3MBTL4 Silent p.T367T 0.38 TCGA-DC-5337-01 18 9553342 9553342 G A PPP4R1 Missense_Mutation p.R757W 0.22 deleterious(0) probably_damaging(0.983) TCGA-DC-5337-01 19 1047523 1047523 C T ABCA7 Silent p.G713G 0.24 TCGA-DC-5337-01 19 16884050 16884050 G A NWD1 Missense_Mutation p.A842T 0.33 tolerated(0.07) benign(0.002) TCGA-DC-5337-01 19 17844122 17844122 G A MAP1S Missense_Mutation p.R970H 0.29 deleterious(0) possibly_damaging(0.814) TCGA-DC-5337-01 19 18497015 18497015 C A GDF15 Missense_Mutation p.L6I 0.48 tolerated_low_confidence(0.28) benign(0.099) TCGA-DC-5337-01 19 38189363 38189363 C T ZNF607 Missense_Mutation p.A557T 0.17 deleterious(0.01) benign(0.278) TCGA-DC-5337-01 19 38980821 38980821 C T RYR1 Missense_Mutation p.R1974W 0.37 possibly_damaging(0.78) TCGA-DC-5337-01 19 43514144 43514144 C T PSG11 3'UTR 0.37 TCGA-DC-5337-01 19 49671933 49671933 G A TRPM4 Missense_Mutation p.E246K 0.29 tolerated(0.08) possibly_damaging(0.561) TCGA-DC-5337-01 19 55341633 55341633 G A KIR3DL1 Missense_Mutation p.R413H 0.80 tolerated(0.14) benign(0.004) TCGA-DC-5337-01 19 58620017 58620017 C T ZSCAN18 Intron 0.33 TCGA-DC-5337-01 19 5997100 5997100 C T RFX2 Missense_Mutation p.G662R 0.17 deleterious(0) probably_damaging(1) TCGA-DC-5337-01 19 9266634 9266634 A T ZNF317 5'UTR 0.26 TCGA-DC-5337-01 1 115258748 115258748 C A NRAS Missense_Mutation p.G12C 0.37 deleterious(0.04) probably_damaging(0.955) TCGA-DC-5337-01 1 19436959 19436959 C A UBR4 Splice_Site p.X3965_splice 0.61 TCGA-DC-5337-01 1 220344349 220344349 G A RAB3GAP2 Silent p.L897L 0.34 TCGA-DC-5337-01 1 228347117 228347117 G A GJC2 3'UTR 0.08 TCGA-DC-5337-01 1 228553825 228553825 G A OBSCN Missense_Mutation p.G7329R 0.34 probably_damaging(0.959) TCGA-DC-5337-01 1 235850291 235850291 G A LYST Silent p.C3586C 0.22 TCGA-DC-5337-01 1 29069170 29069170 G A YTHDF2 Missense_Mutation p.D130N 0.39 tolerated(0.07) benign(0.15) TCGA-DC-5337-01 1 46206743 46206743 T A IPP Missense_Mutation p.K185I 0.41 deleterious(0.03) possibly_damaging(0.46) TCGA-DC-5337-01 1 53546545 53546545 T C PODN Missense_Mutation p.L601P 0.19 deleterious(0) probably_damaging(1) TCGA-DC-5337-01 1 53927246 53927246 C T DMRTB1 Silent p.D226D 0.36 TCGA-DC-5337-01 20 23066686 23066686 C T CD93 Silent p.E48E 0.32 TCGA-DC-5337-01 20 44006956 44006956 C T TP53TG5 5'UTR 0.29 TCGA-DC-5337-01 20 57599243 57599243 C T TUBB1 Missense_Mutation p.A254V 0.67 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-DC-5337-01 20 62039789 62039789 G A KCNQ2 Missense_Mutation p.R622W 0.60 deleterious(0) probably_damaging(0.988) TCGA-DC-5337-01 21 37583900 37583900 G T DOPEY2 Missense_Mutation p.R244I 0.36 deleterious(0) probably_damaging(1) TCGA-DC-5337-01 21 47684123 47684123 C T MCM3AP Silent p.A1081A 0.31 TCGA-DC-5337-01 22 24121515 24121515 G A MMP11 Missense_Mutation p.D84N 0.32 deleterious(0) probably_damaging(0.97) TCGA-DC-5337-01 2 105858361 105858361 C T GPR45 Silent p.L16L 0.34 TCGA-DC-5337-01 2 125405504 125405504 C T CNTNAP5 Silent p.H681H 0.28 TCGA-DC-5337-01 2 210704104 210704104 G A UNC80 Missense_Mutation p.R1067H 0.34 probably_damaging(0.993) TCGA-DC-5337-01 2 222347300 222347300 C T EPHA4 Missense_Mutation p.V364M 0.33 deleterious(0) benign(0.328) TCGA-DC-5337-01 2 240024515 240024515 C T HDAC4 Silent p.T725T 0.41 TCGA-DC-5337-01 2 51254947 51254947 G A NRXN1 Silent p.V155V 0.31 TCGA-DC-5337-01 2 71351574 71351574 C T MCEE Missense_Mutation p.R47Q 0.34 tolerated(0.07) benign(0.113) TCGA-DC-5337-01 2 87015672 87015672 G A CD8A Missense_Mutation p.R213C 0.50 deleterious(0) probably_damaging(1) TCGA-DC-5337-01 3 113329935 113329935 G A SIDT1 Missense_Mutation p.A601T 0.34 deleterious(0.01) probably_damaging(0.996) TCGA-DC-5337-01 3 127842596 127842596 G A RUVBL1 5'UTR 0.08 TCGA-DC-5337-01 3 131293954 131293954 G T CPNE4 Missense_Mutation p.F296L 0.29 deleterious(0.01) benign(0.035) TCGA-DC-5337-01 3 138738751 138738751 C T PRR23B Silent p.P251P 0.38 TCGA-DC-5337-01 3 194080475 194080475 G A LRRC15 Missense_Mutation p.P439L 0.35 deleterious(0.01) possibly_damaging(0.769) TCGA-DC-5337-01 3 46016794 46016794 G A FYCO1 Missense_Mutation p.S111F 0.38 deleterious(0) probably_damaging(0.989) TCGA-DC-5337-01 3 48616674 48616674 C T COL7A1 Missense_Mutation p.G1782R 0.45 unknown(0) TCGA-DC-5337-01 3 55922427 55922427 G A ERC2 Silent p.L852L 0.41 TCGA-DC-5337-01 4 126411849 126411849 C T FAT4 Silent p.N4624N 0.35 TCGA-DC-5337-01 4 139163242 139163242 A G SLC7A11 5'UTR 0.36 TCGA-DC-5337-01 4 185941440 185941440 G A HELT Silent p.A166A 0.32 TCGA-DC-5337-01 4 73186585 73186585 G A ADAMTS3 Silent p.S316S 0.06 TCGA-DC-5337-01 4 7780458 7780458 C T AFAP1 Intron 0.33 TCGA-DC-5337-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.37 TCGA-DC-5337-01 5 140182324 140182324 C T PCDHA3 Silent p.S514S 0.45 TCGA-DC-5337-01 5 140237891 140237891 G A PCDHA10 Missense_Mutation p.R753Q 0.38 tolerated_low_confidence(0.12) benign(0.016) TCGA-DC-5337-01 5 140263141 140263141 G A PCDHA13 Missense_Mutation p.G430R 0.29 tolerated_low_confidence(0.07) benign(0.301) TCGA-DC-5337-01 5 140552370 140552370 G A PCDHB7 5'UTR 0.40 TCGA-DC-5337-01 5 140725113 140725113 G A PCDHGA3 Missense_Mutation p.V505I 0.38 tolerated_low_confidence(0.42) benign(0.147) TCGA-DC-5337-01 5 140745765 140745765 C T PCDHGA5 Missense_Mutation p.T623M 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DC-5337-01 5 140751219 140751219 G A PCDHGB3 Missense_Mutation p.V420M 0.08 deleterious(0) possibly_damaging(0.853) TCGA-DC-5337-01 5 140772816 140772816 G A PCDHGA8 Missense_Mutation p.A146T 0.30 tolerated_low_confidence(0.57) benign(0.23) TCGA-DC-5337-01 5 145887490 145887490 C T TCERG1 Nonsense_Mutation p.R989* 0.34 TCGA-DC-5337-01 5 71490301 71490301 G A MAP1B Silent p.K373K 0.24 TCGA-DC-5337-01 5 79616672 79616672 G A SPZ1 Missense_Mutation p.R213H 0.28 tolerated(0.37) benign(0) TCGA-DC-5337-01 6 117859999 117859999 G T DCBLD1 Splice_Site p.X326_splice 0.34 TCGA-DC-5337-01 6 165715763 165715763 G A C6orf118 Silent p.C16C 0.29 TCGA-DC-5337-01 6 168708804 168708804 C T DACT2 Missense_Mutation p.G545R 0.32 tolerated(0.16) benign(0.33) TCGA-DC-5337-01 6 169857522 169857522 A G WDR27 3'UTR 0.09 TCGA-DC-5337-01 6 27215510 27215510 G A PRSS16 5'UTR 0.23 TCGA-DC-5337-01 6 33177820 33177820 G A RING1 Missense_Mutation p.R123Q 0.36 deleterious(0.02) benign(0.335) TCGA-DC-5337-01 6 43006431 43006431 C A CUL7 Splice_Site p.X1565_splice 0.18 TCGA-DC-5337-01 6 73102485 73102485 C T RIMS1 Missense_Mutation p.R1531C 0.39 deleterious(0) probably_damaging(0.996) TCGA-DC-5337-01 6 79726343 79726343 G A PHIP Missense_Mutation p.R385C 0.33 deleterious(0) probably_damaging(0.995) TCGA-DC-5337-01 7 70885988 70885988 C T WBSCR17 Missense_Mutation p.R287W 0.38 deleterious(0) probably_damaging(0.998) TCGA-DC-5337-01 8 113240986 113240986 T - CSMD3 Frame_Shift_Del p.R3655Gfs*46 0.26 TCGA-DC-5337-01 8 143831749 143831749 G A LYPD2 Silent p.L110L 0.59 TCGA-DC-5337-01 8 144663457 144663457 G A EEF1D Silent p.H443H 0.43 TCGA-DC-5337-01 8 144874958 144874958 C T SCRIB Missense_Mutation p.R1366H 0.08 probably_damaging(0.991) TCGA-DC-5337-01 8 24772212 24772212 G A NEFM Silent p.A302A 0.29 TCGA-DC-5337-01 8 27650324 27650324 A G ESCO2 Missense_Mutation p.K498R 0.36 tolerated(0.12) benign(0.1) TCGA-DC-5337-01 8 48752648 48752648 G A PRKDC Silent p.F2460F 0.35 TCGA-DC-5337-01 8 70498635 70498635 C T SULF1 Silent p.I152I 0.29 TCGA-DC-5337-01 9 130630695 130630695 C T AK1 Missense_Mutation p.D141N 0.13 deleterious(0) probably_damaging(1) TCGA-DC-5337-01 9 138011365 138011365 G A OLFM1 Missense_Mutation p.G249S 0.28 tolerated(0.36) benign(0.005) TCGA-DC-5337-01 9 140322556 140322556 C T NOXA1 Missense_Mutation p.T111M 0.40 deleterious(0.01) probably_damaging(0.99) TCGA-DC-5337-01 9 14805124 14805124 C T FREM1 Missense_Mutation p.A1101T 0.30 tolerated(0.3) benign(0.023) TCGA-DC-5337-01 9 35396474 35396474 G A UNC13B Silent p.E1021E 0.29 TCGA-DC-5337-01 9 73213399 73213399 C T TRPM3 Missense_Mutation p.R983H 0.16 deleterious(0.04) probably_damaging(0.998) TCGA-DC-5337-01 9 8404560 8404560 C T PTPRD Missense_Mutation p.R1396Q 0.32 deleterious(0) possibly_damaging(0.71) TCGA-DC-5337-01 9 96318751 96318751 G A FAM120A Missense_Mutation p.G788R 0.39 deleterious(0) probably_damaging(0.999) TCGA-DC-5337-01 X 110489922 110489922 G A CAPN6 Silent p.S603S 0.78 TCGA-DC-5337-01 X 123554280 123554280 G T TENM1 Missense_Mutation p.S1621R 0.86 tolerated(0.44) benign(0.008) TCGA-DC-5337-01 X 16870190 16870190 C T RBBP7 Missense_Mutation p.R384H 0.84 deleterious(0) probably_damaging(0.996) TCGA-DC-5337-01 X 24625952 24625952 C T PCYT1B Missense_Mutation p.D82N 0.33 deleterious(0) probably_damaging(0.982) TCGA-DC-5337-01 X 3235262 3235262 G A MXRA5 Missense_Mutation p.R2154W 0.83 deleterious(0) probably_damaging(0.93) TCGA-DC-5337-01 X 63444307 63444307 G A ASB12 Missense_Mutation p.R289C 0.44 deleterious(0) benign(0.098) TCGA-DC-5337-01 X 70338702 70338702 A G MED12 Missense_Mutation p.E33G 0.78 possibly_damaging(0.87) TCGA-DC-5869-01 10 103588508 103588508 C T KCNIP2 Intron 0.40 TCGA-DC-5869-01 10 11505244 11505244 G A USP6NL Silent p.S578S 0.19 TCGA-DC-5869-01 10 17369026 17369026 C T ST8SIA6 Missense_Mutation p.D208N 0.12 deleterious(0) probably_damaging(0.997) TCGA-DC-5869-01 10 43601939 43601939 C G RET Missense_Mutation p.T328S 0.38 tolerated(0.11) benign(0.036) TCGA-DC-5869-01 10 45953679 45953679 G A MARCH8 3'UTR 0.08 TCGA-DC-5869-01 10 93751900 93751900 T C BTAF1 Missense_Mutation p.M960T 0.11 tolerated(0.48) benign(0.007) TCGA-DC-5869-01 11 63330850 63330850 T G HRASLS2 5'UTR 0.27 TCGA-DC-5869-01 11 67176971 67176971 C T TBC1D10C Missense_Mutation p.R363W 0.64 deleterious(0) benign(0.386) TCGA-DC-5869-01 11 67219263 67219263 C T GPR152 Silent p.S311S 0.48 TCGA-DC-5869-01 11 68772923 68772923 G A MRGPRF Silent p.S285S 0.50 TCGA-DC-5869-01 12 121880495 121880495 C T KDM2B Missense_Mutation p.A917T 0.27 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-DC-5869-01 12 1675890 1675890 A G FBXL14 3'UTR 0.09 TCGA-DC-5869-01 12 21069205 21069205 T A SLCO1B3 3'UTR 0.15 TCGA-DC-5869-01 12 438067 438067 C T KDM5A Missense_Mutation p.M634I 0.17 deleterious(0.01) benign(0.002) TCGA-DC-5869-01 12 5153813 5153813 G A KCNA5 Missense_Mutation p.R167H 0.18 deleterious(0) probably_damaging(0.999) TCGA-DC-5869-01 12 6127925 6127925 G A VWF Silent p.S1553S 0.60 TCGA-DC-5869-01 12 65564798 65564798 G A LEMD3 Silent p.S474S 0.17 TCGA-DC-5869-01 12 8083073 8083073 C A SLC2A3 Intron 0.11 TCGA-DC-5869-01 12 80889013 80889013 C G PTPRQ Missense_Mutation p.S578C 0.48 deleterious(0) probably_damaging(0.99) TCGA-DC-5869-01 13 111164531 111164531 A G COL4A2 Missense_Mutation p.N1711S 0.15 unknown(0) TCGA-DC-5869-01 13 36445372 36445372 G A DCLK1 Missense_Mutation p.S310F 0.09 tolerated(0.06) possibly_damaging(0.683) TCGA-DC-5869-01 13 51939831 51939831 G A INTS6 3'UTR 0.12 TCGA-DC-5869-01 13 99554620 99554620 C T DOCK9 Silent p.A434A 0.13 TCGA-DC-5869-01 14 102482766 102482766 C G DYNC1H1 Missense_Mutation p.I2518M 0.50 benign(0.133) TCGA-DC-5869-01 14 75747528 75747528 G A FOS Missense_Mutation p.E182K 0.28 deleterious(0) probably_damaging(0.954) TCGA-DC-5869-01 14 93398044 93398044 G A CHGA Missense_Mutation p.E269K 0.19 tolerated(0.21) possibly_damaging(0.508) TCGA-DC-5869-01 14 94084687 94084687 C T UNC79 Silent p.S1281S 0.19 TCGA-DC-5869-01 15 27126103 27126103 C T GABRA5 Missense_Mutation p.P66L 0.49 deleterious(0) probably_damaging(1) TCGA-DC-5869-01 15 31319180 31319180 C T TRPM1 Missense_Mutation p.R1162H 0.55 tolerated(0.48) benign(0.028) TCGA-DC-5869-01 15 54590047 54590047 C T UNC13C Nonsense_Mutation p.R1343* 0.26 TCGA-DC-5869-01 15 72499525 72499525 C T PKM Silent p.Q310Q 0.23 TCGA-DC-5869-01 15 83926804 83926804 C T BNC1 Missense_Mutation p.R792H 0.45 tolerated(0.49) benign(0.002) TCGA-DC-5869-01 16 31927095 31927095 C A ZNF267 Missense_Mutation p.Q509K 0.15 tolerated(1) benign(0.015) TCGA-DC-5869-01 16 4702720 4702720 A G MGRN1 Missense_Mutation p.K113R 0.10 tolerated(0.09) benign(0.085) TCGA-DC-5869-01 16 88498493 88498493 G A ZNF469 Missense_Mutation p.A1511T 0.22 benign(0.001) TCGA-DC-5869-01 16 88931518 88931518 C T PABPN1L Missense_Mutation p.A160T 0.14 deleterious(0.02) possibly_damaging(0.866) TCGA-DC-5869-01 17 4020421 4020421 T C ZZEF1 Missense_Mutation p.D180G 0.81 tolerated(1) benign(0) TCGA-DC-5869-01 17 74721622 74721623 - T JMJD6 Frame_Shift_Ins p.D149Rfs*10 0.09 TCGA-DC-5869-01 17 7577508 7577508 T C TP53 Missense_Mutation p.E258G 0.68 deleterious(0) probably_damaging(0.999) TCGA-DC-5869-01 17 80332552 80332552 T C UTS2R Missense_Mutation p.F118L 0.09 deleterious(0) probably_damaging(0.967) TCGA-DC-5869-01 18 48703236 48703236 A G MEX3C Missense_Mutation p.S489P 0.09 deleterious(0.03) benign(0.002) TCGA-DC-5869-01 19 18233560 18233560 C T MAST3 Missense_Mutation p.S104L 0.40 deleterious(0) benign(0.097) TCGA-DC-5869-01 19 36349690 36349690 G A KIRREL2 Missense_Mutation p.R149H 0.35 tolerated(0.12) benign(0.028) TCGA-DC-5869-01 19 53794373 53794373 G T BIRC8 5'UTR 0.42 TCGA-DC-5869-01 19 55221571 55221571 C T AC098784.2 3'Flank 0.19 TCGA-DC-5869-01 19 55610394 55610394 C T PPP1R12C Silent p.A267A 0.41 TCGA-DC-5869-01 1 15420804 15420804 G A KAZN Missense_Mutation p.V451I 0.37 tolerated(0.1) benign(0.171) TCGA-DC-5869-01 1 158589083 158589083 G T SPTA1 Silent p.V2153V 0.64 TCGA-DC-5869-01 1 175355235 175355235 G A TNR Silent p.Y570Y 0.63 TCGA-DC-5869-01 1 220702171 220702171 G T MARK1 Missense_Mutation p.A3S 0.14 tolerated(0.53) benign(0.046) TCGA-DC-5869-01 1 41012779 41012779 G A ZNF684 Missense_Mutation p.V262M 0.29 tolerated(0.2) benign(0.006) TCGA-DC-5869-01 1 45166614 45166614 A G C1orf228 Silent p.E154E 0.20 TCGA-DC-5869-01 1 45501373 45501373 A G ZSWIM5 Silent p.L760L 0.10 TCGA-DC-5869-01 1 54474759 54474759 A G LDLRAD1 Missense_Mutation p.S172P 0.09 tolerated(1) benign(0.008) TCGA-DC-5869-01 1 76397610 76397610 G A ASB17 Nonsense_Mutation p.Q123* 0.12 TCGA-DC-5869-01 20 39788336 39788336 A T PLCG1 Missense_Mutation p.Q103L 0.06 tolerated(0.28) benign(0.001) TCGA-DC-5869-01 20 58330366 58330366 A G PHACTR3 Missense_Mutation p.D163G 0.33 tolerated(0.29) benign(0) TCGA-DC-5869-01 21 32639011 32639011 C T TIAM1 Missense_Mutation p.R93Q 0.28 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-DC-5869-01 22 37322078 37322078 T C CSF2RB Missense_Mutation p.S84P 0.09 tolerated(0.24) benign(0.009) TCGA-DC-5869-01 22 38823189 38823189 G A KCNJ4 Missense_Mutation p.R317C 0.11 deleterious(0.01) probably_damaging(1) TCGA-DC-5869-01 22 43287104 43287104 T C PACSIN2 Missense_Mutation p.K101R 0.10 tolerated(0.54) benign(0.015) TCGA-DC-5869-01 22 43608506 43608506 C T SCUBE1 Missense_Mutation p.G716S 0.72 tolerated(0.44) benign(0.005) TCGA-DC-5869-01 2 110015096 110015096 C T SH3RF3 Silent p.A332A 0.25 TCGA-DC-5869-01 2 175436915 175436915 C A WIPF1 Silent p.V206V 0.72 TCGA-DC-5869-01 2 203749209 203749209 A G WDR12 Missense_Mutation p.L264P 0.08 tolerated(0.18) probably_damaging(0.995) TCGA-DC-5869-01 2 225653824 225653824 G A DOCK10 Missense_Mutation p.A1792V 0.04 deleterious(0) benign(0.273) TCGA-DC-5869-01 2 235951729 235951729 C T SH3BP4 Silent p.F772F 0.36 TCGA-DC-5869-01 2 31416076 31416076 G A CAPN14 Silent p.A345A 0.12 TCGA-DC-5869-01 2 71766338 71766338 G A DYSF Silent p.S515S 0.56 TCGA-DC-5869-01 2 88825975 88825975 C T TEX37 Missense_Mutation p.P27L 0.12 tolerated_low_confidence(0.09) probably_damaging(0.988) TCGA-DC-5869-01 3 108836866 108836866 C T MORC1 Missense_Mutation p.R14H 0.43 tolerated(0.94) benign(0) TCGA-DC-5869-01 3 113878601 113878601 C T DRD3 Splice_Site p.X128_splice 0.38 TCGA-DC-5869-01 3 133374273 133374276 AAGA - TOPBP1 Frame_Shift_Del p.F200Lfs*4 0.25 TCGA-DC-5869-01 3 155303880 155303880 G A PLCH1 Nonsense_Mutation p.R180* 0.29 TCGA-DC-5869-01 3 183822626 183822626 A G HTR3E Silent p.E173E 0.10 TCGA-DC-5869-01 3 3887423 3887423 C A LRRN1 Silent p.I366I 0.35 TCGA-DC-5869-01 3 52420860 52420860 G A DNAH1 Silent p.K2998K 0.15 TCGA-DC-5869-01 3 78663931 78663931 C T ROBO1 Silent p.A1434A 0.48 TCGA-DC-5869-01 4 146030352 146030352 C G ABCE1 Missense_Mutation p.A119G 0.32 deleterious(0) possibly_damaging(0.895) TCGA-DC-5869-01 4 153245453 153245453 G A FBXW7 Missense_Mutation p.H580Y 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-DC-5869-01 4 153249451 153249451 G A FBXW7 Missense_Mutation p.L443F 0.34 deleterious(0) probably_damaging(0.994) TCGA-DC-5869-01 4 3255166 3255166 G A MSANTD1 Missense_Mutation p.D185N 0.10 tolerated(0.21) benign(0.004) TCGA-DC-5869-01 4 77700013 77700013 C T SHROOM3 Missense_Mutation p.R1892W 0.25 deleterious(0) probably_damaging(1) TCGA-DC-5869-01 5 112170821 112170824 ACGG - APC Frame_Shift_Del p.R640Mfs*5 0.53 TCGA-DC-5869-01 5 131822771 131822771 T C IRF1 Missense_Mutation p.N80S 0.18 deleterious(0) probably_damaging(0.995) TCGA-DC-5869-01 5 140772810 140772810 G A PCDHGA8 Missense_Mutation p.E144K 0.34 deleterious_low_confidence(0) probably_damaging(1) TCGA-DC-5869-01 5 158139268 158139268 A G EBF1 Silent p.Y481Y 0.13 TCGA-DC-5869-01 5 50091241 50091241 C T PARP8 Missense_Mutation p.S473F 0.43 tolerated_low_confidence(0.73) benign(0.058) TCGA-DC-5869-01 6 144758846 144758846 A G UTRN Missense_Mutation p.E402G 0.71 deleterious(0.01) probably_damaging(0.999) TCGA-DC-5869-01 6 159653629 159653629 G A FNDC1 Silent p.S695S 0.11 TCGA-DC-5869-01 6 26428931 26428931 T C BTN2A3P RNA 0.24 TCGA-DC-5869-01 7 122255279 122255279 T G CADPS2 Missense_Mutation p.E393D 0.11 tolerated(0.27) benign(0.126) TCGA-DC-5869-01 7 134136461 134136461 G A AKR1B1 Silent p.D37D 0.46 TCGA-DC-5869-01 7 150752165 150752165 C T CDK5 Missense_Mutation p.R200Q 0.34 tolerated(0.14) benign(0.008) TCGA-DC-5869-01 7 88963702 88963702 C T ZNF804B Missense_Mutation p.P469L 0.10 deleterious(0) probably_damaging(1) TCGA-DC-5869-01 7 99955934 99955934 G C PILRB Silent p.R3R 0.57 TCGA-DC-5869-01 8 110408352 110408352 G T PKHD1L1 Missense_Mutation p.R303I 0.08 deleterious(0.01) benign(0.122) TCGA-DC-5869-01 8 125131953 125131953 C T FER1L6 Silent p.I1832I 0.09 TCGA-DC-5869-01 9 115451839 115451839 G A INIP Missense_Mutation p.H63Y 0.09 tolerated(0.33) benign(0.064) TCGA-DC-5869-01 9 123165187 123165187 T C CDK5RAP2 Missense_Mutation p.E1735G 0.12 deleterious(0.04) benign(0.063) TCGA-DC-5869-01 9 130828995 130828995 T C NAIF1 Missense_Mutation p.Q129R 0.09 deleterious(0) probably_damaging(0.932) TCGA-DC-5869-01 9 135150792 135150792 A G SETX Silent p.V2317V 0.15 TCGA-DC-5869-01 9 135150794 135150794 C A SETX Missense_Mutation p.V2317F 0.15 tolerated(0.24) benign(0.078) TCGA-DC-5869-01 9 6330322 6330322 C A TPD52L3 3'UTR 0.51 TCGA-DC-5869-01 X 130215773 130215773 G T ARHGAP36 Missense_Mutation p.R45L 0.21 tolerated_low_confidence(0.52) benign(0.004) TCGA-DC-5869-01 X 140984899 140984899 C T MAGEC3 Missense_Mutation p.P452L 0.21 tolerated(0.77) benign(0.01) TCGA-DC-5869-01 X 140984944 140984944 T A MAGEC3 Missense_Mutation p.L467H 0.26 deleterious(0) probably_damaging(0.998) TCGA-DC-5869-01 X 147744068 147744068 C A AFF2 Missense_Mutation p.L274I 0.14 deleterious(0.05) benign(0.009) TCGA-DC-5869-01 X 149905206 149905206 G A MTMR1 Missense_Mutation p.R399Q 0.11 deleterious(0.03) benign(0.018) TCGA-DC-5869-01 X 26213318 26213318 A G MAGEB6 3'UTR 0.49 TCGA-DC-5869-01 X 34961413 34961413 C T FAM47B Silent p.P155P 0.60 TCGA-DC-5869-01 X 50111945 50111945 T C DGKK RNA 0.56 TCGA-DC-5869-01 X 53610679 53610679 G A HUWE1 Missense_Mutation p.R1787W 0.26 probably_damaging(0.999) TCGA-DC-5869-01 X 54780087 54780087 C A ITIH6 Missense_Mutation p.A1117S 0.24 tolerated(0.22) probably_damaging(0.997) TCGA-DC-5869-01 X 71360009 71360009 G A NHSL2 Missense_Mutation p.V871I 0.58 tolerated(0.45) benign(0.03) TCGA-DC-6154-01 10 108466353 108466353 G A SORCS1 Nonsense_Mutation p.R395* 0.32 TCGA-DC-6154-01 10 111890235 111890235 G A ADD3 Missense_Mutation p.G575S 0.26 deleterious(0.04) benign(0.14) TCGA-DC-6154-01 10 55943255 55943255 G T PCDH15 Silent p.S513S 0.26 TCGA-DC-6154-01 10 68940162 68940162 C T CTNNA3 Silent p.T320T 0.55 TCGA-DC-6154-01 10 70451507 70451507 A G TET1 Missense_Mutation p.N2116S 0.62 deleterious(0.04) benign(0.091) TCGA-DC-6154-01 11 108047802 108047802 A G NPAT Missense_Mutation p.S308P 0.08 deleterious(0) probably_damaging(0.964) TCGA-DC-6154-01 11 111491069 111491070 GA - SIK2 Frame_Shift_Del p.E87Dfs*19 0.24 TCGA-DC-6154-01 11 111779472 111779472 A G CRYAB 3'UTR 0.10 TCGA-DC-6154-01 11 119054138 119054138 C A NLRX1 Missense_Mutation p.S973Y 0.29 deleterious_low_confidence(0.03) benign(0.173) TCGA-DC-6154-01 11 119054621 119054621 C T NLRX1 3'UTR 0.07 TCGA-DC-6154-01 11 18194941 18194941 G A MRGPRX4 Silent p.A46A 0.60 TCGA-DC-6154-01 11 55890503 55890503 G T OR8H3 Missense_Mutation p.V219L 0.43 tolerated(0.51) benign(0.012) TCGA-DC-6154-01 11 55999918 55999918 G T OR5T2 Silent p.V248V 0.25 TCGA-DC-6154-01 11 57569214 57569214 A G CTNND1 Silent p.E322E 0.30 TCGA-DC-6154-01 11 58480248 58480248 G T GLYAT Missense_Mutation p.H101N 0.26 tolerated(0.17) possibly_damaging(0.58) TCGA-DC-6154-01 11 68773609 68773609 A G MRGPRF Missense_Mutation p.C57R 0.16 deleterious(0.01) possibly_damaging(0.766) TCGA-DC-6154-01 11 94597909 94597909 G A AMOTL1 Silent p.T715T 0.56 TCGA-DC-6154-01 12 105150919 105150919 C T CHST11 Missense_Mutation p.R133W 0.42 deleterious(0) probably_damaging(1) TCGA-DC-6154-01 12 4479724 4479724 C T FGF23 Missense_Mutation p.A181T 0.39 tolerated(0.05) possibly_damaging(0.662) TCGA-DC-6154-01 12 54403382 54403382 A C HOXC8 Missense_Mutation p.E105A 0.47 deleterious(0.02) benign(0.041) TCGA-DC-6154-01 12 54903470 54903470 G A NCKAP1L Missense_Mutation p.R175H 0.40 deleterious(0) probably_damaging(0.999) TCGA-DC-6154-01 12 56722140 56722140 A G PAN2 Missense_Mutation p.L152P 0.12 tolerated(0.24) benign(0.094) TCGA-DC-6154-01 12 56740261 56740261 C T STAT2 Missense_Mutation p.R670Q 0.26 deleterious(0.01) benign(0.426) TCGA-DC-6154-01 12 8374804 8374804 C A FAM90A1 Missense_Mutation p.A337S 0.14 tolerated(0.94) benign(0.182) TCGA-DC-6154-01 12 89819034 89819034 G A POC1B Silent p.D412D 0.35 TCGA-DC-6154-01 14 104208357 104208357 G A PPP1R13B Missense_Mutation p.P531L 0.44 deleterious(0.05) benign(0.005) TCGA-DC-6154-01 14 58563538 58563538 C T C14orf37 Missense_Mutation p.E665K 0.24 deleterious(0.02) possibly_damaging(0.486) TCGA-DC-6154-01 14 89212550 89212550 C A EML5 Missense_Mutation p.M145I 0.44 tolerated(0.36) benign(0.015) TCGA-DC-6154-01 15 44048916 44048916 T C PDIA3 Missense_Mutation p.F106L 0.76 tolerated(0.06) possibly_damaging(0.575) TCGA-DC-6154-01 15 90771151 90771151 A G SEMA4B Missense_Mutation p.E597G 0.33 tolerated(0.05) benign(0.397) TCGA-DC-6154-01 16 30775521 30775521 G A RNF40 Missense_Mutation p.R155Q 0.14 tolerated(0.07) benign(0.108) TCGA-DC-6154-01 16 31341919 31341919 G A ITGAM Missense_Mutation p.R1091K 0.43 tolerated(0.12) benign(0.019) TCGA-DC-6154-01 16 3254253 3254253 G A OR1F1 Missense_Mutation p.G3R 0.21 tolerated(0.73) benign(0.004) TCGA-DC-6154-01 17 16855854 16855854 G A TNFRSF13B Silent p.P35P 0.18 TCGA-DC-6154-01 17 37187708 37187708 G A CTD-2206N4.2 5'Flank 0.42 TCGA-DC-6154-01 17 41960309 41960309 G A MPP2 Missense_Mutation p.R139C 0.35 deleterious(0) possibly_damaging(0.855) TCGA-DC-6154-01 17 6526240 6526240 C T KIAA0753 Missense_Mutation p.V356I 0.23 tolerated(0.59) benign(0.007) TCGA-DC-6154-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.95 TCGA-DC-6154-01 18 19102717 19102717 G A GREB1L Missense_Mutation p.E1903K 0.55 deleterious(0) probably_damaging(0.999) TCGA-DC-6154-01 18 70526307 70526307 C T NETO1 Missense_Mutation p.A75T 0.76 tolerated(0.13) benign(0.26) TCGA-DC-6154-01 19 36581412 36581412 C T WDR62 Missense_Mutation p.S675F 0.30 deleterious(0) possibly_damaging(0.787) TCGA-DC-6154-01 19 40875869 40875869 C T PLD3 Missense_Mutation p.R162C 0.40 tolerated(0.14) benign(0.1) TCGA-DC-6154-01 19 5645355 5645355 A G SAFB Missense_Mutation p.D185G 0.30 tolerated(0.49) possibly_damaging(0.599) TCGA-DC-6154-01 19 57329167 57329167 G A PEG3 Missense_Mutation p.T270M 0.38 deleterious(0.02) probably_damaging(0.911) TCGA-DC-6154-01 19 8665850 8665850 G A ADAMTS10 Missense_Mutation p.R258W 0.35 deleterious(0) possibly_damaging(0.747) TCGA-DC-6154-01 19 9057237 9057237 G A MUC16 Missense_Mutation p.T10070I 0.37 possibly_damaging(0.702) TCGA-DC-6154-01 1 115256528 115256528 T G NRAS Missense_Mutation p.Q61H 0.35 deleterious(0) possibly_damaging(0.531) TCGA-DC-6154-01 1 11561179 11561179 T C PTCHD2 Missense_Mutation p.C44R 0.40 deleterious_low_confidence(0.01) benign(0.333) TCGA-DC-6154-01 1 115829258 115829258 G A NGF Silent p.S53S 0.22 TCGA-DC-6154-01 1 145533127 145533127 C T ITGA10 Missense_Mutation p.R408C 0.33 deleterious(0) possibly_damaging(0.816) TCGA-DC-6154-01 1 150779234 150779234 C T CTSK Silent p.L16L 0.23 TCGA-DC-6154-01 1 154313476 154313476 C T ATP8B2 Missense_Mutation p.T427M 0.33 deleterious(0) probably_damaging(0.917) TCGA-DC-6154-01 1 176838053 176838053 G T ASTN1 Missense_Mutation p.L1192I 0.41 tolerated(0.21) benign(0.367) TCGA-DC-6154-01 1 19519981 19519981 C T UBR4 Silent p.T363T 0.42 TCGA-DC-6154-01 1 19595174 19595174 G A AKR7L Silent p.F64F 0.44 TCGA-DC-6154-01 1 196461402 196461402 G T KCNT2 Missense_Mutation p.N55K 0.07 deleterious(0) benign(0.041) TCGA-DC-6154-01 1 196716376 196716376 G A CFH Missense_Mutation p.R1210H 0.35 tolerated(0.14) benign(0.153) TCGA-DC-6154-01 1 207785158 207785158 G A CR1 Silent p.T2144T 0.52 TCGA-DC-6154-01 1 214816638 214816638 C T CENPF Missense_Mutation p.R1653W 0.39 probably_damaging(0.999) TCGA-DC-6154-01 1 216595329 216595329 T A USH2A Missense_Mutation p.H117L 0.41 benign(0.017) TCGA-DC-6154-01 1 65690506 65690506 G T AK4 Missense_Mutation p.R170S 0.35 deleterious(0) possibly_damaging(0.626) TCGA-DC-6154-01 20 23016345 23016345 C T SSTR4 Silent p.Y75Y 0.24 TCGA-DC-6154-01 20 62293264 62293264 G T RTEL1 Missense_Mutation p.Q121H 0.18 deleterious(0) probably_damaging(0.991) TCGA-DC-6154-01 20 62367355 62367355 G T ZGPAT 3'UTR 0.11 TCGA-DC-6154-01 21 40193578 40193578 A G ETS2 Missense_Mutation p.I382V 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-DC-6154-01 22 30639928 30639928 G A LIF Silent p.R107R 0.50 TCGA-DC-6154-01 22 45681926 45681926 G T UPK3A Nonsense_Mutation p.E53* 0.43 TCGA-DC-6154-01 2 128477647 128477647 C A WDR33 Missense_Mutation p.G651V 0.86 deleterious_low_confidence(0) unknown(0) TCGA-DC-6154-01 2 179439732 179439732 C T TTN Silent p.R23709R 0.19 TCGA-DC-6154-01 2 210588323 210588323 G T MAP2 Intron 0.14 TCGA-DC-6154-01 2 233655433 233655433 G A GIGYF2 Silent p.R268R 0.31 TCGA-DC-6154-01 2 62450701 62450701 C T B3GNT2 3'UTR 0.85 TCGA-DC-6154-01 2 90193192 90193192 G T IGKV1D-13 Missense_Mutation p.R40I 0.21 deleterious(0.01) benign(0.094) TCGA-DC-6154-01 3 123010050 123010050 G A ADCY5 Silent p.N1079N 0.33 TCGA-DC-6154-01 3 173997208 173997208 G T NLGN1 Missense_Mutation p.A473S 0.40 deleterious(0) probably_damaging(0.987) TCGA-DC-6154-01 3 183951002 183951002 C T VWA5B2 Missense_Mutation p.T116M 0.55 deleterious(0.05) benign(0.21) TCGA-DC-6154-01 3 185327065 185327065 C T SENP2 Nonsense_Mutation p.R217* 0.46 TCGA-DC-6154-01 3 46450894 46450894 A T CCRL2 3'UTR 0.55 TCGA-DC-6154-01 3 53911367 53911367 G A ACTR8 Silent p.I186I 0.39 TCGA-DC-6154-01 3 7503372 7503372 G A GRM7 Missense_Mutation p.R493H 0.32 tolerated(0.07) benign(0.001) TCGA-DC-6154-01 4 126372233 126372233 G T FAT4 Missense_Mutation p.Q3354H 0.18 probably_damaging(0.976) TCGA-DC-6154-01 4 164050451 164050451 A C NAF1 Silent p.A361A 0.26 TCGA-DC-6154-01 4 164440528 164440528 G A TMA16 Missense_Mutation p.M158I 0.39 tolerated(0.13) benign(0.349) TCGA-DC-6154-01 4 20852202 20852202 C A KCNIP4 Missense_Mutation p.K84N 0.50 deleterious(0) probably_damaging(0.952) TCGA-DC-6154-01 4 47563083 47563083 A G ATP10D Missense_Mutation p.T887A 0.11 tolerated(0.07) probably_damaging(0.993) TCGA-DC-6154-01 4 73186532 73186532 C T ADAMTS3 Missense_Mutation p.R334H 0.38 deleterious(0.04) possibly_damaging(0.564) TCGA-DC-6154-01 4 74276122 74276122 G A ALB Missense_Mutation p.A237T 0.35 deleterious(0.01) possibly_damaging(0.867) TCGA-DC-6154-01 5 112175348 112175348 G T APC Nonsense_Mutation p.E1353* 0.90 TCGA-DC-6154-01 5 115142188 115142188 T C CDO1 Missense_Mutation p.N144S 0.09 deleterious(0) probably_damaging(0.963) TCGA-DC-6154-01 5 126732286 126732286 C G MEGF10 Missense_Mutation p.L159V 0.40 tolerated(0.23) probably_damaging(0.999) TCGA-DC-6154-01 5 140801124 140801124 C T PCDHGA11 Silent p.L110L 0.41 TCGA-DC-6154-01 5 141364449 141364449 G A RNF14 Missense_Mutation p.A440T 0.37 tolerated(0.65) benign(0.015) TCGA-DC-6154-01 5 178540880 178540880 G A ADAMTS2 Silent p.L1208L 0.39 TCGA-DC-6154-01 5 26903803 26903803 G T CDH9 Missense_Mutation p.D314E 0.28 tolerated(0.41) benign(0.003) TCGA-DC-6154-01 5 60821796 60821796 C G ZSWIM6 Silent p.L561L 0.46 TCGA-DC-6154-01 6 112537599 112537599 G A LAMA4 Silent p.N89N 0.68 TCGA-DC-6154-01 6 121768866 121768866 C T GJA1 Silent p.G291G 0.24 TCGA-DC-6154-01 6 170160775 170160775 G T ERMARD Silent p.V260V 0.20 TCGA-DC-6154-01 6 20490526 20490526 G A E2F3 Silent p.P421P 0.30 TCGA-DC-6154-01 6 25770613 25770613 T G SLC17A4 Missense_Mutation p.V178G 0.15 tolerated(0.56) benign(0.186) TCGA-DC-6154-01 6 27835153 27835153 G A HIST1H1B Missense_Mutation p.A52V 0.31 tolerated(0.06) possibly_damaging(0.667) TCGA-DC-6154-01 6 32363855 32363855 C A BTNL2 Missense_Mutation p.D347Y 0.46 tolerated(0.05) probably_damaging(0.914) TCGA-DC-6154-01 6 38939413 38939413 G A DNAH8 Missense_Mutation p.R3949Q 0.09 probably_damaging(0.991) TCGA-DC-6154-01 6 76558219 76558219 T C MYO6 Missense_Mutation p.I350T 0.51 deleterious(0) unknown(0) TCGA-DC-6154-01 6 99790909 99790909 C A FAXC Missense_Mutation p.R89S 0.25 deleterious(0.02) benign(0.167) TCGA-DC-6154-01 7 102110282 102110282 C T LRWD1 Silent p.G465G 0.55 TCGA-DC-6154-01 7 135419041 135419041 G T FAM180A Missense_Mutation p.S68R 0.29 tolerated(0.09) possibly_damaging(0.51) TCGA-DC-6154-01 7 29132271 29132271 G T CPVL Silent p.V170V 0.20 TCGA-DC-6154-01 7 43917044 43917044 C T URGCP Missense_Mutation p.R673H 0.34 tolerated(0.18) benign(0.009) TCGA-DC-6154-01 7 94051241 94051241 C T COL1A2 Missense_Mutation p.R794W 0.28 unknown(0) TCGA-DC-6154-01 8 106815604 106815604 G T ZFPM2 Missense_Mutation p.E1098D 0.20 tolerated(0.22) benign(0.036) TCGA-DC-6154-01 8 133806768 133806768 C T PHF20L1 Nonsense_Mutation p.R66* 0.32 TCGA-DC-6154-01 8 143614726 143614726 G A BAI1 Missense_Mutation p.V1157I 0.69 tolerated(0.92) benign(0.312) TCGA-DC-6154-01 8 144991242 144991242 C T PLEC Silent p.S4386S 0.43 TCGA-DC-6154-01 8 15397982 15397982 C T TUSC3 Missense_Mutation p.R15W 0.43 deleterious_low_confidence(0.05) unknown(0) TCGA-DC-6154-01 8 41615556 41615556 G T ANK1 Missense_Mutation p.Q76K 0.44 deleterious(0.02) possibly_damaging(0.516) TCGA-DC-6154-01 9 103014586 103014586 C A INVS Missense_Mutation p.S367Y 0.50 deleterious(0.05) possibly_damaging(0.771) TCGA-DC-6154-01 9 18639276 18639276 G A ADAMTSL1 Missense_Mutation p.G234E 0.44 deleterious(0) probably_damaging(0.993) TCGA-DC-6154-01 9 34647864 34647864 C T GALT Missense_Mutation p.T138M 0.55 deleterious(0) probably_damaging(0.997) TCGA-DC-6154-01 9 446589 446589 G A DOCK8 Missense_Mutation p.V1934I 0.35 tolerated(0.06) benign(0.243) TCGA-DC-6154-01 X 109696928 109696928 C A RGAG1 Missense_Mutation p.S1028Y 0.64 deleterious(0) probably_damaging(0.986) TCGA-DC-6154-01 X 122800972 122800972 T C THOC2 Missense_Mutation p.E392G 0.12 deleterious(0) benign(0.126) TCGA-DC-6154-01 X 135405494 135405494 G T GPR112 Nonsense_Mutation p.E210* 0.13 TCGA-DC-6154-01 X 150842552 150842552 T C PASD1 Missense_Mutation p.I690T 0.21 tolerated(0.14) benign(0.291) TCGA-DC-6154-01 X 152814155 152814155 C T ATP2B3 Missense_Mutation p.T394M 0.30 deleterious(0) possibly_damaging(0.896) TCGA-DC-6154-01 X 153033000 153033000 G A PLXNB3 Missense_Mutation p.D263N 0.23 tolerated(0.77) benign(0.002) TCGA-DC-6154-01 X 153421825 153421825 G A OPN1LW Silent p.T267T 0.15 TCGA-DC-6154-01 X 34149236 34149236 A C FAM47A Missense_Mutation p.L387R 0.25 deleterious(0) probably_damaging(0.991) TCGA-DC-6154-01 X 53115062 53115062 C T TSPYL2 Silent p.N496N 0.24 TCGA-DC-6154-01 X 8995915 8995915 G A FAM9B Silent p.F162F 0.23 TCGA-DC-6155-01 10 101190345 101190345 G T GOT1 5'UTR 0.25 TCGA-DC-6155-01 11 71249452 71249452 C G KRTAP5-8 Silent p.S117S 0.29 TCGA-DC-6155-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.28 deleterious(0.03) possibly_damaging(0.644) TCGA-DC-6155-01 12 42853901 42853901 G T PRICKLE1 Missense_Mutation p.H736N 0.25 tolerated(0.06) benign(0.001) TCGA-DC-6155-01 12 72149035 72149035 C T RAB21 Silent p.N42N 0.57 TCGA-DC-6155-01 12 94654444 94654444 T C PLXNC1 Missense_Mutation p.I1093T 0.30 deleterious(0) probably_damaging(0.994) TCGA-DC-6155-01 12 99222980 99222980 C T ANKS1B Missense_Mutation p.R1013Q 0.07 tolerated(0.07) possibly_damaging(0.468) TCGA-DC-6155-01 13 72204807 72204807 G A DACH1 Missense_Mutation p.A338V 0.24 probably_damaging(0.979) TCGA-DC-6155-01 14 63453787 63453787 T G KCNH5 Intron 0.18 TCGA-DC-6155-01 14 69387768 69387768 A C ACTN1 Missense_Mutation p.F99V 0.28 deleterious(0) probably_damaging(0.983) TCGA-DC-6155-01 14 81025624 81025624 G A CEP128 Missense_Mutation p.T960M 0.26 tolerated(0.72) benign(0.008) TCGA-DC-6155-01 14 86088994 86088994 C T FLRT2 Missense_Mutation p.P379L 0.37 tolerated(0.42) benign(0.038) TCGA-DC-6155-01 15 40661726 40661726 A G DISP2 Missense_Mutation p.D1138G 0.17 tolerated(0.31) benign(0.006) TCGA-DC-6155-01 15 81636260 81636260 A G TMC3 Missense_Mutation p.F549L 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-DC-6155-01 16 24372898 24372898 T G CACNG3 Missense_Mutation p.F221C 0.12 tolerated(0.07) possibly_damaging(0.827) TCGA-DC-6155-01 16 70863708 70863708 C T HYDIN Missense_Mutation p.R4642H 0.46 probably_damaging(0.923) TCGA-DC-6155-01 16 72093037 72093037 A T HP Missense_Mutation p.K131M 0.14 deleterious(0) probably_damaging(0.928) TCGA-DC-6155-01 16 747029 747029 C T FBXL16 Missense_Mutation p.R126H 0.13 tolerated(0.08) benign(0.321) TCGA-DC-6155-01 17 72295954 72295954 G A DNAI2 Silent p.S274S 0.66 TCGA-DC-6155-01 17 73498463 73498463 C T CASKIN2 Missense_Mutation p.G898R 0.74 deleterious(0.03) possibly_damaging(0.755) TCGA-DC-6155-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.39 TCGA-DC-6155-01 18 3457362 3457362 G A TGIF1 Splice_Site p.X211_splice 0.42 TCGA-DC-6155-01 18 6958514 6958514 C T LAMA1 Silent p.S2642S 0.31 TCGA-DC-6155-01 18 6985393 6985393 C G LAMA1 Missense_Mutation p.E1835Q 0.26 deleterious(0.01) possibly_damaging(0.883) TCGA-DC-6155-01 19 15220577 15220577 C T SYDE1 Missense_Mutation p.R165C 0.29 deleterious(0) probably_damaging(0.964) TCGA-DC-6155-01 19 17014404 17014404 C T CPAMD8 Silent p.V1526V 0.37 TCGA-DC-6155-01 19 3179472 3179472 C T S1PR4 Missense_Mutation p.R228C 0.27 tolerated(0.19) benign(0.011) TCGA-DC-6155-01 19 53612683 53612683 T C ZNF415 Silent p.Q205Q 0.14 TCGA-DC-6155-01 1 12955474 12955474 G T PRAMEF10 Missense_Mutation p.L69M 0.76 deleterious(0) probably_damaging(0.95) TCGA-DC-6155-01 1 12955488 12955488 A T PRAMEF10 Missense_Mutation p.L64H 0.76 deleterious(0) probably_damaging(1) TCGA-DC-6155-01 1 151132425 151132425 A G LYSMD1 3'UTR 0.25 TCGA-DC-6155-01 1 184868326 184868326 A T FAM129A Missense_Mutation p.F58I 0.13 tolerated(0.06) benign(0.041) TCGA-DC-6155-01 1 207975268 207975268 C T C1orf132 RNA 0.35 TCGA-DC-6155-01 1 22456337 22456337 C T WNT4 Missense_Mutation p.A29T 0.10 deleterious(0.01) possibly_damaging(0.848) TCGA-DC-6155-01 1 230372463 230372463 G A GALNT2 Missense_Mutation p.R200Q 0.17 tolerated(0.46) benign(0.014) TCGA-DC-6155-01 1 75039139 75039139 G A C1orf173 Missense_Mutation p.A752V 0.23 tolerated(0.51) benign(0.014) TCGA-DC-6155-01 20 2443653 2443653 T C SNRPB Intron 0.09 TCGA-DC-6155-01 20 36982828 36982828 G A LBP Silent p.S171S 0.43 TCGA-DC-6155-01 20 58349505 58349505 G A PHACTR3 Silent p.L378L 0.09 TCGA-DC-6155-01 20 61872856 61872856 G A NKAIN4 Missense_Mutation p.P207L 0.09 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-DC-6155-01 20 61982174 61982174 G A CHRNA4 Missense_Mutation p.R197C 0.37 deleterious(0.01) probably_damaging(0.976) TCGA-DC-6155-01 21 32624330 32624330 C T TIAM1 Missense_Mutation p.R380H 0.32 tolerated(0.07) benign(0.049) TCGA-DC-6155-01 22 17443601 17443601 A G GAB4 3'UTR 0.33 TCGA-DC-6155-01 22 41856366 41856366 G T PHF5A 3'UTR 0.33 TCGA-DC-6155-01 2 11053815 11053815 C T KCNF1 Silent p.T421T 0.56 TCGA-DC-6155-01 2 11053867 11053867 G A KCNF1 Missense_Mutation p.E439K 0.20 tolerated(0.68) benign(0.078) TCGA-DC-6155-01 2 121729540 121729540 C T GLI2 Silent p.A361A 0.24 TCGA-DC-6155-01 2 133541426 133541426 C T NCKAP5 Silent p.P986P 0.49 TCGA-DC-6155-01 2 207602986 207602986 A T MDH1B 3'UTR 0.15 TCGA-DC-6155-01 2 220402397 220402397 C G ASIC4 Missense_Mutation p.T590S 0.24 tolerated(0.67) benign(0.005) TCGA-DC-6155-01 2 220402784 220402784 G A ASIC4 3'UTR 0.19 TCGA-DC-6155-01 2 234749731 234749731 T C HJURP Silent p.P565P 0.11 TCGA-DC-6155-01 2 49189767 49189767 A C FSHR 3'UTR 0.18 TCGA-DC-6155-01 2 65243581 65243581 C T SLC1A4 Missense_Mutation p.P270S 0.18 deleterious(0) probably_damaging(1) TCGA-DC-6155-01 2 80101318 80101318 C T CTNNA2 Silent p.A234A 0.60 TCGA-DC-6155-01 3 101022988 101022988 A G IMPG2 Splice_Site p.X167_splice 0.16 TCGA-DC-6155-01 3 154056059 154056059 C T GPR149 Missense_Mutation p.R542H 0.18 deleterious(0) probably_damaging(0.912) TCGA-DC-6155-01 3 52475665 52475665 G A SEMA3G Nonsense_Mutation p.R198* 0.55 TCGA-DC-6155-01 4 183696105 183696105 C T TENM3 Silent p.D1701D 0.26 TCGA-DC-6155-01 5 150722455 150722455 C T SLC36A2 Nonsense_Mutation p.W145* 0.15 TCGA-DC-6155-01 5 2752437 2752437 C T C5orf38 Missense_Mutation p.T20M 0.17 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-DC-6155-01 5 54424363 54424363 G C CDC20B Missense_Mutation p.N260K 0.17 tolerated(0.09) benign(0.328) TCGA-DC-6155-01 6 152477212 152477212 C T SYNE1 Silent p.E7937E 0.50 TCGA-DC-6155-01 6 35705118 35705118 G A ARMC12 Missense_Mutation p.G78E 0.10 tolerated(0.19) probably_damaging(1) TCGA-DC-6155-01 6 87966424 87966424 A G ZNF292 Missense_Mutation p.N1026S 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-DC-6155-01 7 106781331 106781331 T - PRKAR2B Frame_Shift_Del p.L174Wfs*8 0.20 TCGA-DC-6155-01 7 149497386 149497386 G A SSPO RNA 0.42 TCGA-DC-6155-01 7 20768054 20768054 G A ABCB5 Missense_Mutation p.R948Q 0.28 tolerated(0.29) benign(0.273) TCGA-DC-6155-01 7 21781775 21781775 C T DNAH11 Silent p.N2722N 0.33 TCGA-DC-6155-01 7 21985459 21985459 G T CDCA7L 5'UTR 0.15 TCGA-DC-6155-01 7 38299700 38299700 C T TRGC1 Missense_Mutation p.E171K 0.16 tolerated(1) benign(0.002) TCGA-DC-6155-01 7 8268281 8268281 G T ICA1 Missense_Mutation p.T69N 0.29 deleterious(0) probably_damaging(0.982) TCGA-DC-6155-01 8 33354201 33354201 A G MAK16 Missense_Mutation p.E194G 0.12 tolerated(0.06) benign(0.125) TCGA-DC-6155-01 9 140852115 140852115 C T CACNA1B Missense_Mutation p.R437W 0.25 deleterious(0.01) benign(0.428) TCGA-DC-6155-01 9 90586125 90586125 C G CDK20 Missense_Mutation p.K105N 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-DC-6155-01 X 122820467 122820467 T C THOC2 Silent p.E233E 0.09 TCGA-DC-6155-01 X 132351846 132351846 C T TFDP3 Missense_Mutation p.A148T 0.28 tolerated(0.44) benign(0.001) TCGA-DC-6155-01 X 137939775 137939775 G A FGF13 Missense_Mutation p.A39V 0.10 deleterious_low_confidence(0.02) benign(0.002) TCGA-DC-6155-01 X 155171927 155171927 G A VAMP7 3'UTR 0.57 TCGA-DC-6155-01 X 32486674 32486674 G T DMD Missense_Mutation p.Q1035K 0.16 probably_damaging(0.915) TCGA-DC-6155-01 X 48978806 48978806 A T GPKOW Missense_Mutation p.I133N 0.28 deleterious(0) possibly_damaging(0.775) TCGA-DC-6155-01 X 54328283 54328283 G T WNK3 Missense_Mutation p.P367T 0.23 deleterious(0) probably_damaging(1) TCGA-DC-6157-01 10 24873709 24873709 G A ARHGAP21 Missense_Mutation p.R1837W 0.30 deleterious(0.03) probably_damaging(1) TCGA-DC-6157-01 10 7773950 7773950 G A ITIH2 Silent p.T546T 0.31 TCGA-DC-6157-01 11 103909781 103909781 T C DDI1 3'UTR 0.10 TCGA-DC-6157-01 11 4825815 4825815 C T OR52R1 5'Flank 0.20 TCGA-DC-6157-01 11 55111573 55111573 C T OR4A16 Silent p.L299L 0.08 TCGA-DC-6157-01 11 57281597 57281597 C T SLC43A1 Intron 0.44 TCGA-DC-6157-01 11 609553 609553 C T PHRF1 Missense_Mutation p.A1365V 0.42 tolerated(0.65) benign(0) TCGA-DC-6157-01 11 64136150 64136150 G A RPS6KA4 Intron 0.56 TCGA-DC-6157-01 11 65062101 65062101 C A POLA2 Missense_Mutation p.L480M 0.16 tolerated(1) benign(0.136) TCGA-DC-6157-01 11 67842205 67842205 G A CHKA Silent p.G203G 0.08 TCGA-DC-6157-01 11 67953362 67953362 C T SUV420H1 Missense_Mutation p.R65H 0.10 deleterious(0) possibly_damaging(0.468) TCGA-DC-6157-01 12 55423578 55423578 C A NEUROD4 3'UTR 0.44 TCGA-DC-6157-01 13 25672215 25672215 G A PABPC3 Missense_Mutation p.G627S 0.32 tolerated_low_confidence(0.14) benign(0.005) TCGA-DC-6157-01 13 37271262 37271262 T G SERTM1 3'UTR 0.11 TCGA-DC-6157-01 13 52605034 52605034 C G UTP14C Missense_Mutation p.I698M 0.03 tolerated(0.06) benign(0.363) TCGA-DC-6157-01 13 52857416 52857416 C T RP11-248G5.8 RNA 0.32 TCGA-DC-6157-01 13 74420217 74420217 C T KLF12 Silent p.S139S 0.17 TCGA-DC-6157-01 14 30105669 30105669 C G PRKD1 Silent p.V339V 0.08 TCGA-DC-6157-01 15 22864299 22864299 C A TUBGCP5 Missense_Mutation p.Q753K 0.34 tolerated(0.18) benign(0.05) TCGA-DC-6157-01 15 34130562 34130562 G A RYR3 Silent p.A4127A 0.19 TCGA-DC-6157-01 15 64506102 64506102 C T CSNK1G1 Silent p.T222T 0.33 TCGA-DC-6157-01 16 88500105 88500105 G A ZNF469 Missense_Mutation p.R2048Q 0.20 benign(0) TCGA-DC-6157-01 17 18875008 18875008 G A FAM83G Silent p.D712D 0.38 TCGA-DC-6157-01 17 36955631 36955631 A G PIP4K2B Missense_Mutation p.L16P 0.19 tolerated(0.21) benign(0.062) TCGA-DC-6157-01 17 4439611 4439611 G A SPNS2 Silent p.L499L 0.20 TCGA-DC-6157-01 17 65716047 65716047 A G NOL11 Missense_Mutation p.D94G 0.49 deleterious(0) probably_damaging(0.977) TCGA-DC-6157-01 17 66933106 66933106 T A ABCA8 Missense_Mutation p.H151L 0.39 tolerated(0.17) benign(0.208) TCGA-DC-6157-01 17 74004596 74004596 T C EVPL Missense_Mutation p.I1564V 0.22 tolerated(0.13) benign(0.008) TCGA-DC-6157-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.61 deleterious(0.01) possibly_damaging(0.876) TCGA-DC-6157-01 17 7579591 7579591 C G TP53 Splice_Site p.X33_splice 0.26 TCGA-DC-6157-01 18 14184973 14184973 T G ANKRD20A5P Intron 0.41 TCGA-DC-6157-01 18 50866179 50866179 T C DCC Missense_Mutation p.V754A 0.21 deleterious(0.03) probably_damaging(0.951) TCGA-DC-6157-01 19 12792398 12792398 G A DHPS Silent p.R61R 0.09 TCGA-DC-6157-01 19 33424435 33424435 C A CEP89 Nonsense_Mutation p.E270* 0.13 TCGA-DC-6157-01 19 35741361 35741361 C T LSR Missense_Mutation p.R133W 0.16 deleterious(0) probably_damaging(0.999) TCGA-DC-6157-01 19 40553361 40553361 C T ZNF780B Silent p.K51K 0.17 TCGA-DC-6157-01 19 41383816 41383816 G A CYP2A7 Missense_Mutation p.T305M 0.10 deleterious(0.01) possibly_damaging(0.84) TCGA-DC-6157-01 19 4318479 4318479 G A FSD1 Silent p.A312A 0.29 TCGA-DC-6157-01 19 46299052 46299053 - A RSPH6A 3'UTR 0.26 TCGA-DC-6157-01 19 51217188 51217188 G A SHANK1 Missense_Mutation p.A220V 0.24 possibly_damaging(0.837) TCGA-DC-6157-01 19 54659013 54659013 C T CNOT3 Intron 0.46 TCGA-DC-6157-01 19 55054612 55054612 C T KIR3DX1 3'UTR 0.35 TCGA-DC-6157-01 19 7964899 7964899 G A LRRC8E Missense_Mutation p.E498K 0.20 tolerated(0.19) benign(0.032) TCGA-DC-6157-01 1 12034882 12034882 C T PLOD1 3'UTR 0.17 TCGA-DC-6157-01 1 145075950 145075950 T C PDE4DIP 5'UTR 0.32 TCGA-DC-6157-01 1 145075970 145075970 C G PDE4DIP 5'UTR 0.29 TCGA-DC-6157-01 1 153029143 153029143 G T SPRR2A Nonsense_Mutation p.C23* 0.17 TCGA-DC-6157-01 1 178753557 178753557 G C RALGPS2 Missense_Mutation p.S21T 0.19 tolerated(0.13) benign(0.143) TCGA-DC-6157-01 1 31441275 31441275 G A PUM1 Missense_Mutation p.T524M 0.16 deleterious(0.03) benign(0.439) TCGA-DC-6157-01 1 32042921 32042921 C G TINAGL1 Missense_Mutation p.R58G 0.28 deleterious(0) probably_damaging(0.999) TCGA-DC-6157-01 1 32207245 32207247 TTG - BAI2 In_Frame_Del p.N555del 0.67 TCGA-DC-6157-01 1 32222058 32222058 C T BAI2 Missense_Mutation p.R127Q 0.11 tolerated(0.34) benign(0.032) TCGA-DC-6157-01 1 35656297 35656297 C A SFPQ Silent p.T439T 0.19 TCGA-DC-6157-01 1 44085423 44085423 C T PTPRF Missense_Mutation p.R1669W 0.12 deleterious(0) probably_damaging(1) TCGA-DC-6157-01 1 78392466 78392466 T C NEXN Silent p.F251F 0.17 TCGA-DC-6157-01 1 79107713 79107713 C A IFI44L 3'UTR 0.18 TCGA-DC-6157-01 20 10277601 10277601 G T SNAP25 Missense_Mutation p.A104S 0.19 deleterious(0.05) benign(0.04) TCGA-DC-6157-01 20 33529527 33529527 G A GSS Silent p.Y199Y 0.15 TCGA-DC-6157-01 20 33568412 33568412 A T MYH7B Missense_Mutation p.N167I 0.22 probably_damaging(1) TCGA-DC-6157-01 20 44005966 44005966 G A TP53TG5 Missense_Mutation p.S47L 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-DC-6157-01 20 60294425 60294425 A C RP11-429E11.3 5'UTR 0.06 TCGA-DC-6157-01 20 60906096 60906096 G T LAMA5 Silent p.G1214G 0.07 TCGA-DC-6157-01 20 62421591 62421591 G A ZBTB46 Nonsense_Mutation p.R174* 0.11 TCGA-DC-6157-01 21 43160926 43160926 G A RIPK4 3'UTR 0.38 TCGA-DC-6157-01 21 46117576 46117576 C T KRTAP10-12 Missense_Mutation p.P154S 0.23 deleterious(0.05) unknown(0) TCGA-DC-6157-01 22 21213410 21213410 C T PI4KA 5'Flank 0.29 TCGA-DC-6157-01 22 23437925 23437925 C T GNAZ Missense_Mutation p.R15W 0.46 deleterious(0) probably_damaging(0.947) TCGA-DC-6157-01 22 29837544 29837544 G A RFPL1 Silent p.L129L 0.11 TCGA-DC-6157-01 22 30857429 30857429 C T SEC14L3 Missense_Mutation p.G317R 0.12 deleterious(0) probably_damaging(0.999) TCGA-DC-6157-01 22 43558927 43558927 C T TSPO Missense_Mutation p.T147M 0.15 deleterious(0) possibly_damaging(0.451) TCGA-DC-6157-01 22 44371983 44371983 C T SAMM50 Nonsense_Mutation p.R233* 0.33 TCGA-DC-6157-01 2 15555785 15555785 C T NBAS Missense_Mutation p.R941H 0.24 deleterious(0) possibly_damaging(0.601) TCGA-DC-6157-01 2 163055301 163055301 G A FAP Silent p.S456S 0.21 TCGA-DC-6157-01 2 168100233 168100233 G T XIRP2 Missense_Mutation p.Q777H 0.26 probably_damaging(0.996) TCGA-DC-6157-01 2 168726800 168726800 G T B3GALT1 3'UTR 0.06 TCGA-DC-6157-01 2 179463601 179463601 C G TTN Missense_Mutation p.V18946L 0.07 TCGA-DC-6157-01 2 239049819 239049819 G A KLHL30 Missense_Mutation p.G142R 0.24 deleterious(0) probably_damaging(0.999) TCGA-DC-6157-01 2 239170947 239170947 T C PER2 Missense_Mutation p.I398V 0.44 tolerated(0.07) possibly_damaging(0.478) TCGA-DC-6157-01 2 48914789 48914789 T C LHCGR 3'UTR 0.36 TCGA-DC-6157-01 2 97363279 97363279 A C FER1L5 RNA 0.13 TCGA-DC-6157-01 3 105470358 105470358 C T CBLB Missense_Mutation p.C224Y 0.15 deleterious(0) possibly_damaging(0.739) TCGA-DC-6157-01 3 121230739 121230739 G C POLQ Missense_Mutation p.L536V 0.26 deleterious(0) benign(0.179) TCGA-DC-6157-01 3 134967347 134967347 G A EPHB1 Missense_Mutation p.A896T 0.55 tolerated(0.29) benign(0) TCGA-DC-6157-01 3 136573507 136573507 T C SLC35G2 Missense_Mutation p.F69L 0.25 tolerated(0.08) benign(0.059) TCGA-DC-6157-01 3 136573509 136573509 T A SLC35G2 Missense_Mutation p.F69L 0.25 tolerated(0.08) benign(0.059) TCGA-DC-6157-01 3 139280235 139280235 C A NMNAT3 Splice_Site p.X89_splice 0.13 TCGA-DC-6157-01 3 152885969 152885969 G C RAP2B 3'UTR 0.23 TCGA-DC-6157-01 3 180675611 180675611 A G FXR1 Silent p.K295K 0.54 TCGA-DC-6157-01 3 193854037 193854037 A C HES1 5'UTR 0.24 TCGA-DC-6157-01 3 37368886 37368886 G A GOLGA4 Missense_Mutation p.D1859N 0.11 benign(0.008) TCGA-DC-6157-01 3 63638415 63638415 G C SNTN Missense_Mutation p.D18H 0.13 deleterious(0.01) benign(0.353) TCGA-DC-6157-01 3 7721859 7721859 C T GRM7 Missense_Mutation p.R859W 0.07 deleterious(0) probably_damaging(0.993) TCGA-DC-6157-01 3 93755533 93755533 G A ARL13B Silent p.Q208Q 0.12 TCGA-DC-6157-01 4 114823812 114823812 C T ARSJ Missense_Mutation p.S473N 0.05 tolerated(0.21) possibly_damaging(0.763) TCGA-DC-6157-01 4 156634718 156634718 G A GUCY1A3 Missense_Mutation p.E519K 0.16 tolerated(0.19) benign(0.015) TCGA-DC-6157-01 5 108168541 108168541 A T FER Missense_Mutation p.N93I 0.15 tolerated(0.45) possibly_damaging(0.562) TCGA-DC-6157-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.45 TCGA-DC-6157-01 5 112175576 112175576 C T APC Nonsense_Mutation p.Q1429* 0.29 TCGA-DC-6157-01 5 112349037 112349039 TAG - DCP2 In_Frame_Del p.S376del 0.16 TCGA-DC-6157-01 5 140229878 140229878 G A PCDHA9 Missense_Mutation p.D600N 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-DC-6157-01 5 145631292 145631292 G A RBM27 Missense_Mutation p.R433H 0.29 tolerated_low_confidence(0.1) benign(0.072) TCGA-DC-6157-01 5 58270807 58270807 C T PDE4D Missense_Mutation p.R705H 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-DC-6157-01 6 10764744 10764744 G A MAK Missense_Mutation p.P605S 0.16 deleterious(0.03) benign(0.059) TCGA-DC-6157-01 6 139591742 139591742 G T TXLNB Missense_Mutation p.Q180K 0.31 deleterious(0.02) possibly_damaging(0.893) TCGA-DC-6157-01 6 146720306 146720306 T C GRM1 Missense_Mutation p.S711P 0.35 tolerated(0.06) possibly_damaging(0.793) TCGA-DC-6157-01 6 148865890 148865890 C T SASH1 Missense_Mutation p.T1095M 0.06 tolerated(1) benign(0.002) TCGA-DC-6157-01 6 152832174 152832174 A C SYNE1 Missense_Mutation p.L125W 0.06 probably_damaging(1) TCGA-DC-6157-01 6 24581175 24581175 C A KIAA0319 Missense_Mutation p.V420F 0.35 deleterious(0) probably_damaging(0.989) TCGA-DC-6157-01 6 2749453 2749454 - A MYLK4 Frame_Shift_Ins p.Q26Sfs*27 0.25 TCGA-DC-6157-01 6 29976150 29976150 C T ZNRD1-AS1 Intron 0.17 TCGA-DC-6157-01 6 31324917 31324917 G C HLA-B Missense_Mutation p.R7G 0.43 tolerated_low_confidence(0.13) probably_damaging(0.985) TCGA-DC-6157-01 6 7231301 7231301 A T RREB1 Missense_Mutation p.E990V 0.13 tolerated(0.07) possibly_damaging(0.453) TCGA-DC-6157-01 6 84913786 84913786 C T KIAA1009 Silent p.E200E 0.12 TCGA-DC-6157-01 7 149521570 149521570 C G SSPO RNA 0.10 TCGA-DC-6157-01 7 150554581 150554581 C T AOC1 Silent p.F341F 0.12 TCGA-DC-6157-01 7 158109546 158109546 C T PTPRN2 Missense_Mutation p.R81H 0.71 tolerated(0.56) benign(0.001) TCGA-DC-6157-01 7 21639550 21639550 T G DNAH11 Missense_Mutation p.L938W 0.33 probably_damaging(0.954) TCGA-DC-6157-01 7 27194724 27194724 G A HOXA7 Missense_Mutation p.A166V 0.17 tolerated(0.08) benign(0.221) TCGA-DC-6157-01 7 36934508 36934508 G A ELMO1 Missense_Mutation p.R518C 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-DC-6157-01 7 77583124 77583124 G T PHTF2 Missense_Mutation p.M716I 0.09 deleterious(0.02) possibly_damaging(0.786) TCGA-DC-6157-01 7 99950352 99950352 T G PILRB Intron 0.42 TCGA-DC-6157-01 8 108296974 108296974 C T ANGPT1 Missense_Mutation p.E381K 0.09 deleterious(0.01) benign(0.392) TCGA-DC-6157-01 8 139160865 139160865 A C FAM135B Missense_Mutation p.L1116V 0.11 tolerated(0.53) benign(0.018) TCGA-DC-6157-01 8 35542136 35542136 C G UNC5D Missense_Mutation p.A263G 0.62 tolerated(0.22) benign(0.155) TCGA-DC-6157-01 8 53598018 53598018 A T RB1CC1 Nonsense_Mutation p.Y4* 0.16 TCGA-DC-6157-01 8 69445416 69445416 C A C8orf34 Intron 0.14 TCGA-DC-6157-01 9 104356678 104356678 G A PPP3R2 3'UTR 0.47 TCGA-DC-6157-01 9 116246436 116246436 G C RGS3 Missense_Mutation p.D182H 0.11 tolerated(0.12) possibly_damaging(0.838) TCGA-DC-6157-01 9 123792766 123792766 C A C5 Splice_Site p.X223_splice 0.10 TCGA-DC-6157-01 9 39118058 39118058 T C CNTNAP3 Intron 0.09 TCGA-DC-6157-01 9 6565391 6565391 C T GLDC Missense_Mutation p.R630Q 0.46 tolerated(0.15) benign(0.196) TCGA-DC-6157-01 9 66466821 66466821 C T RP11-262H14.1 RNA 0.20 TCGA-DC-6157-01 9 94486946 94486946 G A ROR2 Silent p.H610H 0.45 TCGA-DC-6158-01 10 116225564 116225564 C T ABLIM1 Missense_Mutation p.R445Q 0.24 tolerated(0.05) possibly_damaging(0.87) TCGA-DC-6158-01 10 129537055 129537055 C T FOXI2 Silent p.T261T 0.28 TCGA-DC-6158-01 10 23729417 23729417 T C OTUD1 Missense_Mutation p.V344A 0.13 deleterious(0) possibly_damaging(0.852) TCGA-DC-6158-01 10 46258916 46258916 G A FAM21C Silent p.L572L 0.11 TCGA-DC-6158-01 11 36599925 36599925 G T RAG1 3'UTR 0.46 TCGA-DC-6158-01 11 65661581 65661581 C T FOSL1 Silent p.E103E 0.22 TCGA-DC-6158-01 11 66812174 66812174 G A SYT12 Silent p.K316K 0.49 TCGA-DC-6158-01 11 74015396 74015396 G C P4HA3 Missense_Mutation p.L88V 0.16 tolerated(1) benign(0.085) TCGA-DC-6158-01 12 100497707 100497707 G A UHRF1BP1L Missense_Mutation p.T77I 0.47 deleterious(0) possibly_damaging(0.864) TCGA-DC-6158-01 12 43826260 43826260 A G ADAMTS20 Silent p.S981S 0.06 TCGA-DC-6158-01 12 47629015 47629015 G A PCED1B Missense_Mutation p.E57K 0.57 deleterious(0) probably_damaging(0.999) TCGA-DC-6158-01 12 54914544 54914544 T C NCKAP1L Silent p.Y564Y 0.50 TCGA-DC-6158-01 12 60168467 60168467 G A SLC16A7 Missense_Mutation p.A131T 0.06 deleterious(0.03) probably_damaging(0.974) TCGA-DC-6158-01 12 9230353 9230353 G T A2M Missense_Mutation p.Q1074K 0.54 deleterious(0.01) probably_damaging(0.99) TCGA-DC-6158-01 12 9230354 9230354 C T A2M Silent p.R1073R 0.53 TCGA-DC-6158-01 13 114531583 114531583 T C GAS6 Silent p.G415G 0.16 TCGA-DC-6158-01 13 24871586 24871586 G A SPATA13 Missense_Mutation p.R1099Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-DC-6158-01 13 32981406 32981406 A G N4BP2L1 Missense_Mutation p.M126T 0.19 deleterious(0) possibly_damaging(0.507) TCGA-DC-6158-01 14 27066568 27066568 C T NOVA1 Silent p.S25S 0.51 TCGA-DC-6158-01 14 51411055 51411055 C G PYGL Missense_Mutation p.E23Q 0.52 deleterious(0.05) benign(0.288) TCGA-DC-6158-01 14 71524245 71524245 G C PCNX Silent p.L1552L 0.06 TCGA-DC-6158-01 15 20644016 20644016 C T HERC2P3 RNA 0.11 TCGA-DC-6158-01 15 24925744 24925744 A T NPAP1 3'UTR 0.20 TCGA-DC-6158-01 15 31862284 31862284 C A OTUD7A Nonsense_Mutation p.E90* 0.24 TCGA-DC-6158-01 15 41730613 41730613 C T RTF1 Missense_Mutation p.S98F 0.40 deleterious(0) benign(0.216) TCGA-DC-6158-01 15 45457018 45457018 G A DUOX1 Missense_Mutation p.M1525I 0.29 deleterious(0) possibly_damaging(0.531) TCGA-DC-6158-01 15 77087666 77087666 G A SCAPER Nonsense_Mutation p.Q243* 0.13 TCGA-DC-6158-01 15 79189721 79189721 C T MORF4L1 3'UTR 0.10 TCGA-DC-6158-01 15 89758345 89758345 C A RLBP1 Silent p.V157V 0.40 TCGA-DC-6158-01 16 14693794 14693794 T C PARN Silent p.G269G 0.32 TCGA-DC-6158-01 16 1488172 1488172 G A CCDC154 Missense_Mutation p.A353V 0.35 tolerated(0.09) benign(0.121) TCGA-DC-6158-01 16 67709183 67709183 G A GFOD2 Nonsense_Mutation p.Q345* 0.12 TCGA-DC-6158-01 16 775123 775123 G A CCDC78 Missense_Mutation p.A172V 0.46 tolerated(0.64) benign(0.002) TCGA-DC-6158-01 17 18052249 18052249 C A MYO15A Missense_Mutation p.S2313R 0.70 unknown(0) TCGA-DC-6158-01 17 21208416 21208416 C T MAP2K3 Silent p.D250D 0.12 TCGA-DC-6158-01 17 40695089 40695089 G A NAGLU Silent p.Q355Q 0.30 TCGA-DC-6158-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.46 deleterious(0) probably_damaging(0.997) TCGA-DC-6158-01 18 43314307 43314307 C T SLC14A1 Missense_Mutation p.S193L 0.39 deleterious(0) possibly_damaging(0.823) TCGA-DC-6158-01 19 11303880 11303880 C T KANK2 Silent p.L292L 0.15 TCGA-DC-6158-01 19 11304015 11304015 C T KANK2 Silent p.E247E 0.22 TCGA-DC-6158-01 19 12188149 12188149 A G ZNF844 3'UTR 0.09 TCGA-DC-6158-01 19 1362290 1362290 C T MUM1 Missense_Mutation p.R386C 0.65 deleterious(0.02) benign(0.193) TCGA-DC-6158-01 19 21299857 21299857 C A ZNF714 Missense_Mutation p.F129L 0.20 tolerated(0.27) benign(0) TCGA-DC-6158-01 19 21299951 21299951 C T ZNF714 Nonsense_Mutation p.Q161* 0.21 TCGA-DC-6158-01 19 21300050 21300050 C G ZNF714 Missense_Mutation p.H194D 0.21 deleterious(0) probably_damaging(0.995) TCGA-DC-6158-01 19 21300108 21300108 C T ZNF714 Missense_Mutation p.S213L 0.25 deleterious(0.03) benign(0.23) TCGA-DC-6158-01 19 21300150 21300150 C T ZNF714 Missense_Mutation p.P227L 0.24 tolerated(0.11) probably_damaging(0.973) TCGA-DC-6158-01 19 21300298 21300298 C T ZNF714 Silent p.F276F 0.21 TCGA-DC-6158-01 19 21300365 21300365 C G ZNF714 Missense_Mutation p.L299V 0.26 deleterious(0.02) benign(0.105) TCGA-DC-6158-01 19 21300528 21300528 C G ZNF714 Nonsense_Mutation p.S353* 0.27 TCGA-DC-6158-01 19 21300554 21300554 C T ZNF714 Missense_Mutation p.H362Y 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-DC-6158-01 19 21300696 21300696 C G ZNF714 Nonsense_Mutation p.S409* 0.31 TCGA-DC-6158-01 19 21300765 21300765 C G ZNF714 Missense_Mutation p.A432G 0.22 deleterious(0.03) benign(0.026) TCGA-DC-6158-01 19 21300777 21300777 C T ZNF714 Missense_Mutation p.S436F 0.23 tolerated(0.22) benign(0.011) TCGA-DC-6158-01 19 21301674 21301674 C G ZNF714 3'UTR 0.30 TCGA-DC-6158-01 19 21301748 21301748 C G ZNF714 3'UTR 0.32 TCGA-DC-6158-01 19 21605924 21605924 C T ZNF493 Nonsense_Mutation p.Q155* 0.17 TCGA-DC-6158-01 19 21606037 21606037 C T ZNF493 Silent p.C192C 0.13 TCGA-DC-6158-01 19 21606056 21606056 C T ZNF493 Nonsense_Mutation p.Q199* 0.13 TCGA-DC-6158-01 19 21606129 21606129 C T ZNF493 Missense_Mutation p.S223L 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-DC-6158-01 19 21606236 21606236 C G ZNF493 Missense_Mutation p.H259D 0.17 deleterious(0.01) probably_damaging(0.967) TCGA-DC-6158-01 19 21606336 21606336 C A ZNF493 Missense_Mutation p.P292H 0.26 deleterious(0.01) probably_damaging(1) TCGA-DC-6158-01 19 21606392 21606392 C G ZNF493 Missense_Mutation p.H311D 0.26 deleterious(0) probably_damaging(0.999) TCGA-DC-6158-01 19 21606462 21606462 C G ZNF493 Nonsense_Mutation p.S334* 0.22 TCGA-DC-6158-01 19 21606546 21606546 C G ZNF493 Nonsense_Mutation p.S362* 0.22 TCGA-DC-6158-01 19 21606656 21606656 C G ZNF493 Missense_Mutation p.H399D 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-DC-6158-01 19 21606740 21606740 C T ZNF493 Missense_Mutation p.H427Y 0.14 deleterious(0) possibly_damaging(0.593) TCGA-DC-6158-01 19 39760612 39760612 C T IFNL2 Nonsense_Mutation p.R188* 0.22 TCGA-DC-6158-01 19 54445589 54445589 G A CACNG7 3'UTR 0.47 TCGA-DC-6158-01 19 55665544 55665544 G T TNNI3 Missense_Mutation p.L135I 0.31 tolerated(0.06) possibly_damaging(0.718) TCGA-DC-6158-01 19 56736438 56736438 C A ZSCAN5A Intron 0.12 TCGA-DC-6158-01 1 150238635 150238635 G C APH1A Intron 0.11 TCGA-DC-6158-01 1 160156614 160156614 G A ATP1A4 3'UTR 0.09 TCGA-DC-6158-01 1 165324942 165324942 T C LMX1A Intron 0.38 TCGA-DC-6158-01 1 237837513 237837513 T C RYR2 Missense_Mutation p.V2903A 0.25 possibly_damaging(0.853) TCGA-DC-6158-01 1 241797768 241797768 A C CHML Missense_Mutation p.F434C 0.29 deleterious(0) probably_damaging(0.998) TCGA-DC-6158-01 1 33058584 33058584 C T ZBTB8A Missense_Mutation p.R18C 0.14 probably_damaging(1) TCGA-DC-6158-01 1 9165617 9165617 C T GPR157 Nonsense_Mutation p.W240* 0.42 TCGA-DC-6158-01 20 10030207 10030207 C T ANKEF1 Silent p.H330H 0.07 TCGA-DC-6158-01 20 2775016 2775016 G A CPXM1 Silent p.A675A 0.72 TCGA-DC-6158-01 20 44567705 44567705 T G PCIF1 Missense_Mutation p.S23A 0.16 tolerated(0.27) benign(0.084) TCGA-DC-6158-01 20 57036437 57036437 G A APCDD1L Silent p.H305H 0.15 TCGA-DC-6158-01 20 62292839 62292839 A G RTEL1 Silent p.G97G 0.13 TCGA-DC-6158-01 21 11038941 11038941 C T BAGE2 RNA 0.07 TCGA-DC-6158-01 21 31654689 31654689 C T KRTAP24-1 Missense_Mutation p.V188I 0.63 deleterious(0.05) benign(0.006) TCGA-DC-6158-01 22 43570384 43570384 C T TTLL12 Missense_Mutation p.V354M 0.19 deleterious(0.04) possibly_damaging(0.781) TCGA-DC-6158-01 22 43651559 43651559 C T SCUBE1 Intron 0.73 TCGA-DC-6158-01 2 109513489 109513489 G T EDAR Missense_Mutation p.S407R 0.51 deleterious(0) probably_damaging(0.997) TCGA-DC-6158-01 2 152390749 152390749 C T NEB Intron 0.48 TCGA-DC-6158-01 2 1893031 1893031 G A MYT1L Silent p.D832D 0.19 TCGA-DC-6158-01 2 191862953 191862953 T C STAT1 Missense_Mutation p.N208S 0.22 tolerated(0.8) benign(0.006) TCGA-DC-6158-01 2 203817322 203817322 G A CARF Missense_Mutation p.R116H 0.45 tolerated_low_confidence(1) benign(0.003) TCGA-DC-6158-01 2 226447285 226447285 G A NYAP2 Silent p.P384P 0.54 TCGA-DC-6158-01 2 71892301 71892301 G A DYSF Silent p.P1728P 0.22 TCGA-DC-6158-01 3 108133187 108133187 T A MYH15 Missense_Mutation p.K1366M 0.04 deleterious(0) probably_damaging(0.977) TCGA-DC-6158-01 3 118948710 118948710 A T B4GALT4 Silent p.S79S 0.60 TCGA-DC-6158-01 3 158983098 158983098 T C IQCJ Missense_Mutation p.L129P 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-DC-6158-01 3 178936094 178936094 C G PIK3CA Missense_Mutation p.Q546E 0.44 tolerated(0.13) possibly_damaging(0.705) TCGA-DC-6158-01 3 196229996 196229996 C T RNF168 Missense_Mutation p.G17R 0.69 tolerated(0.25) benign(0.012) TCGA-DC-6158-01 3 21467073 21467073 C T ZNF385D Missense_Mutation p.V255I 0.57 tolerated(0.23) benign(0) TCGA-DC-6158-01 3 38134331 38134331 C T DLEC1 Silent p.I572I 0.23 TCGA-DC-6158-01 3 52597433 52597433 C T PBRM1 Missense_Mutation p.E1293K 0.66 tolerated(0.23) possibly_damaging(0.502) TCGA-DC-6158-01 4 114275532 114275532 G A ANK2 Missense_Mutation p.G1920R 0.35 benign(0.233) TCGA-DC-6158-01 4 16597494 16597494 G A LDB2 Silent p.I80I 0.28 TCGA-DC-6158-01 4 73957234 73957234 G A ANKRD17 Silent p.H2037H 0.31 TCGA-DC-6158-01 4 95239101 95239101 T C HPGDS Missense_Mutation p.K50R 0.26 tolerated(0.15) possibly_damaging(0.473) TCGA-DC-6158-01 5 112175324 112175324 G T APC Nonsense_Mutation p.E1345* 0.51 TCGA-DC-6158-01 5 126746107 126746107 C A MEGF10 Missense_Mutation p.T315N 0.20 deleterious(0.02) possibly_damaging(0.598) TCGA-DC-6158-01 5 139192942 139192942 G A PSD2 Silent p.T140T 0.09 TCGA-DC-6158-01 5 140737183 140737183 C - PCDHGA4 Frame_Shift_Del p.L806Ffs*45 0.39 TCGA-DC-6158-01 5 19839211 19839211 T - CDH18 5'UTR 0.27 TCGA-DC-6158-01 5 5182370 5182370 C T ADAMTS16 Missense_Mutation p.R239C 0.55 deleterious(0.01) possibly_damaging(0.586) TCGA-DC-6158-01 5 64965942 64965942 T A SGTB 3'UTR 0.15 TCGA-DC-6158-01 6 146264622 146264622 C G SHPRH Missense_Mutation p.C632S 0.15 tolerated_low_confidence(0.69) benign(0) TCGA-DC-6158-01 6 147122358 147122358 C A ADGB Missense_Mutation p.T1526K 0.20 tolerated(0.41) benign(0.048) TCGA-DC-6158-01 6 152476106 152476106 G T SYNE1 Missense_Mutation p.S8017Y 0.47 benign(0.089) TCGA-DC-6158-01 6 31732441 31732441 T A SAPCD1 3'UTR 0.31 TCGA-DC-6158-01 6 72892043 72892043 G A RIMS1 Missense_Mutation p.R290Q 0.05 deleterious(0.01) probably_damaging(0.99) TCGA-DC-6158-01 6 79657465 79657465 T C PHIP Missense_Mutation p.M1361V 0.40 deleterious(0.01) probably_damaging(0.955) TCGA-DC-6158-01 6 90660281 90660281 G A BACH2 Missense_Mutation p.T515I 0.25 tolerated(0.24) benign(0.398) TCGA-DC-6158-01 6 94120014 94120014 T C EPHA7 Intron 0.53 TCGA-DC-6158-01 7 100212812 100212812 G A MOSPD3 3'UTR 0.18 TCGA-DC-6158-01 7 106523591 106523591 T - PIK3CG Frame_Shift_Del p.S915Pfs*30 0.26 TCGA-DC-6158-01 7 142571892 142571892 T C TRPV6 Missense_Mutation p.I486V 0.32 tolerated(0.07) benign(0.19) TCGA-DC-6158-01 7 143029930 143029930 C T CLCN1 Silent p.N455N 0.06 TCGA-DC-6158-01 7 147259278 147259278 C A CNTNAP2 Nonsense_Mutation p.S609* 0.16 TCGA-DC-6158-01 7 151478503 151478503 G A PRKAG2 Silent p.F67F 0.32 TCGA-DC-6158-01 7 4213858 4213858 C T SDK1 Missense_Mutation p.P1602L 0.34 tolerated(0.15) possibly_damaging(0.629) TCGA-DC-6158-01 7 44836280 44836280 G A PPIA 5'UTR 0.31 TCGA-DC-6158-01 7 74299902 74299902 G A STAG3L2 RNA 0.27 TCGA-DC-6158-01 8 139601307 139601307 C T COL22A1 3'UTR 0.55 TCGA-DC-6158-01 8 145134985 145134985 G A EXOSC4 Missense_Mutation p.R104H 0.63 deleterious(0.04) benign(0.094) TCGA-DC-6158-01 8 30699868 30699868 A G TEX15 Silent p.D2222D 0.42 TCGA-DC-6158-01 8 54147372 54147372 G A OPRK1 Missense_Mutation p.S186L 0.65 deleterious(0) possibly_damaging(0.749) TCGA-DC-6158-01 8 75737551 75737551 G A PI15 Missense_Mutation p.V23I 0.04 tolerated(0.21) benign(0.001) TCGA-DC-6158-01 9 137707473 137707473 G A COL5A1 Missense_Mutation p.A1356T 0.57 unknown(0) TCGA-DC-6158-01 9 138011851 138011851 C A OLFM1 Missense_Mutation p.Q411K 0.70 tolerated(0.16) possibly_damaging(0.621) TCGA-DC-6158-01 9 91619507 91619507 C T S1PR3 3'UTR 0.60 TCGA-DC-6158-01 X 108868273 108868273 G A KCNE1L 5'UTR 0.08 TCGA-DC-6158-01 X 135314029 135314029 C A MAP7D3 Nonsense_Mutation p.E363* 0.16 TCGA-DC-6158-01 X 47102927 47102927 C T USP11 Silent p.H615H 0.34 TCGA-DC-6158-01 X 8138033 8138033 C T VCX2 3'UTR 0.83 TCGA-DC-6160-01 10 61112139 61112139 G A FAM13C Missense_Mutation p.A72V 0.22 tolerated_low_confidence(0.05) benign(0) TCGA-DC-6160-01 10 78771791 78771791 A - KCNMA1 Frame_Shift_Del p.Y676Tfs*15 0.29 TCGA-DC-6160-01 10 85984164 85984164 G A LRIT2 Nonsense_Mutation p.R273* 0.36 TCGA-DC-6160-01 10 871701 871702 - G LARP4B Intron 0.19 TCGA-DC-6160-01 10 93952314 93952314 T G CPEB3 Missense_Mutation p.E362A 0.49 deleterious(0.04) benign(0.277) TCGA-DC-6160-01 11 2190907 2190907 C T TH Silent p.A126A 0.35 TCGA-DC-6160-01 11 32410610 32410610 C T WT1 Silent p.A516A 0.35 TCGA-DC-6160-01 11 57147010 57147010 C T PRG3 Missense_Mutation p.R111H 0.43 tolerated(0.54) benign(0.001) TCGA-DC-6160-01 11 66107675 66107675 T C BRMS1 Missense_Mutation p.D182G 0.10 tolerated(0.16) benign(0.062) TCGA-DC-6160-01 12 106480539 106480539 G A NUAK1 Silent p.I162I 0.42 TCGA-DC-6160-01 12 25380283 25380283 C T KRAS Missense_Mutation p.A59T 0.26 tolerated(0.06) possibly_damaging(0.528) TCGA-DC-6160-01 12 57585235 57585235 C T LRP1 Missense_Mutation p.R2457C 0.35 probably_damaging(0.998) TCGA-DC-6160-01 13 108863441 108863441 T C LIG4 Missense_Mutation p.D59G 0.28 tolerated(0.33) benign(0.005) TCGA-DC-6160-01 13 20716415 20716415 G A GJA3 Missense_Mutation p.P338L 0.35 tolerated(0.46) benign(0) TCGA-DC-6160-01 13 37270570 37270570 C T SERTM1 3'UTR 0.24 TCGA-DC-6160-01 14 105420119 105420119 C T AHNAK2 Missense_Mutation p.E557K 0.34 benign(0.037) TCGA-DC-6160-01 14 23512050 23512050 C T PSMB11 Missense_Mutation p.R206C 0.36 deleterious(0.01) possibly_damaging(0.491) TCGA-DC-6160-01 14 65263415 65263415 C T SPTB Missense_Mutation p.E401K 0.11 tolerated(1) benign(0.009) TCGA-DC-6160-01 15 25972335 25972335 G A ATP10A Silent p.D273D 0.37 TCGA-DC-6160-01 15 42042158 42042158 A T MGA Missense_Mutation p.K2118I 0.31 deleterious_low_confidence(0) benign(0.14) TCGA-DC-6160-01 15 65994657 65994657 C A DENND4A Missense_Mutation p.D806Y 0.38 deleterious(0.01) possibly_damaging(0.781) TCGA-DC-6160-01 15 90444895 90444895 C T C15orf38 3'UTR 0.26 TCGA-DC-6160-01 16 1841728 1841728 G A IGFALS Missense_Mutation p.R269W 0.18 deleterious(0) probably_damaging(0.987) TCGA-DC-6160-01 16 29675991 29675991 C T SPN Silent p.A314A 0.39 TCGA-DC-6160-01 16 3632513 3632513 G A SLX4 Missense_Mutation p.R1779W 0.24 deleterious(0) benign(0.39) TCGA-DC-6160-01 16 85840359 85840359 C T COX4I1 Missense_Mutation p.P130L 0.37 deleterious(0.02) probably_damaging(0.989) TCGA-DC-6160-01 16 89357585 89357585 T C ANKRD11 Missense_Mutation p.Q78R 0.09 possibly_damaging(0.775) TCGA-DC-6160-01 17 18219269 18219269 G C SMCR8 Missense_Mutation p.D56H 0.07 deleterious(0) probably_damaging(0.999) TCGA-DC-6160-01 17 36895857 36895857 C T PCGF2 Missense_Mutation p.R64Q 0.33 deleterious(0.03) benign(0.336) TCGA-DC-6160-01 17 44845792 44845792 G A WNT3 Missense_Mutation p.T321M 0.40 deleterious(0) probably_damaging(0.951) TCGA-DC-6160-01 17 57057614 57057614 T C PPM1E Missense_Mutation p.V497A 0.31 tolerated(0.06) benign(0.039) TCGA-DC-6160-01 17 60814611 60814611 C T MARCH10 Silent p.S206S 0.34 TCGA-DC-6160-01 17 67102293 67102293 G A ABCA6 Missense_Mutation p.H817Y 0.30 tolerated(0.39) benign(0.001) TCGA-DC-6160-01 17 71395336 71395336 A G SDK2 Missense_Mutation p.S1022P 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-DC-6160-01 17 7579353 7579363 CCAGACGGAAA - TP53 Frame_Shift_Del p.F109Lfs*36 0.52 TCGA-DC-6160-01 18 15323300 15323301 AA - RNU6-721P 5'Flank 0.31 TCGA-DC-6160-01 19 10081347 10081347 G A COL5A3 Missense_Mutation p.P1296L 0.35 unknown(0) TCGA-DC-6160-01 19 1119071 1119071 C T SBNO2 Missense_Mutation p.R489H 0.28 deleterious(0) benign(0.322) TCGA-DC-6160-01 19 15132725 15132725 C T CCDC105 Silent p.L415L 0.17 TCGA-DC-6160-01 19 18724827 18724827 G A TMEM59L Splice_Site p.X106_splice 0.28 TCGA-DC-6160-01 19 22951126 22951126 C A ZNF99 Missense_Mutation p.E69D 0.27 tolerated(0.12) possibly_damaging(0.767) TCGA-DC-6160-01 19 24097739 24097739 T A ZNF726 5'UTR 0.29 TCGA-DC-6160-01 19 33355540 33355540 G A SLC7A9 Missense_Mutation p.T77M 0.17 tolerated(0.45) possibly_damaging(0.74) TCGA-DC-6160-01 19 36051418 36051418 C T ATP4A Missense_Mutation p.A212T 0.28 deleterious(0) probably_damaging(0.998) TCGA-DC-6160-01 19 38190768 38190768 G A ZNF607 Silent p.S88S 0.23 TCGA-DC-6160-01 19 38983253 38983253 G A RYR1 Missense_Mutation p.R2084Q 0.35 benign(0.006) TCGA-DC-6160-01 19 41386148 41386148 G A CYP2A7 Silent p.G165G 0.33 TCGA-DC-6160-01 19 49385383 49385383 C T TULP2 Silent p.S451S 0.30 TCGA-DC-6160-01 19 50333403 50333403 C T MED25 Silent p.P249P 0.28 TCGA-DC-6160-01 19 51503938 51503938 G A KLK8 Missense_Mutation p.A36V 0.35 tolerated_low_confidence(0.07) possibly_damaging(0.873) TCGA-DC-6160-01 19 53472087 53472087 A G ZNF702P RNA 0.11 TCGA-DC-6160-01 19 53741069 53741069 G A ZNF677 Missense_Mutation p.S304L 0.32 deleterious(0.03) benign(0.006) TCGA-DC-6160-01 19 58238972 58238972 C G ZNF671 5'UTR 0.16 TCGA-DC-6160-01 19 58967438 58967438 G A ZNF324B Missense_Mutation p.R376H 0.27 deleterious(0) probably_damaging(0.999) TCGA-DC-6160-01 19 6906479 6906479 G A EMR1 Missense_Mutation p.D329N 0.28 tolerated(1) benign(0.002) TCGA-DC-6160-01 19 7593142 7593142 C T MCOLN1 Silent p.H292H 0.32 TCGA-DC-6160-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.47 deleterious(0.01) benign(0.045) TCGA-DC-6160-01 1 115398116 115398116 G A SYCP1 Missense_Mutation p.V11I 0.46 tolerated(0.09) benign(0.017) TCGA-DC-6160-01 1 155296611 155296611 G A RUSC1 Missense_Mutation p.R701Q 0.13 tolerated(0.26) possibly_damaging(0.852) TCGA-DC-6160-01 1 156646849 156646849 G - NES Frame_Shift_Del p.R70Afs*40 0.34 TCGA-DC-6160-01 1 237754050 237754050 G A RYR2 Missense_Mutation p.M1306I 0.17 benign(0) TCGA-DC-6160-01 1 33944876 33944876 G T ZSCAN20 5'UTR 0.44 TCGA-DC-6160-01 1 67795384 67795384 G A IL12RB2 Missense_Mutation p.R260Q 0.43 deleterious(0.03) possibly_damaging(0.709) TCGA-DC-6160-01 1 70257750 70257750 C T LRRC7 Nonsense_Mutation p.R72* 0.45 TCGA-DC-6160-01 20 34995649 34995649 G A DLGAP4 5'UTR 0.13 TCGA-DC-6160-01 20 56185320 56185320 C T ZBP1 Silent p.S326S 0.05 TCGA-DC-6160-01 20 60485580 60485580 C T CDH4 Missense_Mutation p.R431C 0.06 deleterious(0) probably_damaging(0.914) TCGA-DC-6160-01 21 27136964 27136964 C T GABPA Silent p.D334D 0.33 TCGA-DC-6160-01 21 46314946 46314946 G A ITGB2 Silent p.A341A 0.08 TCGA-DC-6160-01 22 21384276 21384276 G A SLC7A4 Silent p.H449H 0.42 TCGA-DC-6160-01 2 11598478 11598478 C T E2F6 Intron 0.39 TCGA-DC-6160-01 2 15307424 15307424 T A NBAS Missense_Mutation p.Q2288H 0.33 tolerated(0.09) benign(0.332) TCGA-DC-6160-01 2 170374710 170374710 A G KLHL41 Missense_Mutation p.N463D 0.38 tolerated(0.36) benign(0.113) TCGA-DC-6160-01 2 196718135 196718135 T C DNAH7 Missense_Mutation p.T2905A 0.30 deleterious(0.01) possibly_damaging(0.609) TCGA-DC-6160-01 2 220423001 220423001 C T OBSL1 Missense_Mutation p.R1136H 0.29 tolerated(0.08) probably_damaging(0.998) TCGA-DC-6160-01 2 84771470 84771470 A T DNAH6 Missense_Mutation p.Q259L 0.34 deleterious(0.02) benign(0.006) TCGA-DC-6160-01 3 100988374 100988374 C T IMPG2 Missense_Mutation p.R291H 0.13 tolerated(1) benign(0.005) TCGA-DC-6160-01 3 134851696 134851696 C T EPHB1 Missense_Mutation p.R368W 0.13 deleterious(0.02) possibly_damaging(0.892) TCGA-DC-6160-01 3 157177960 157177960 C T VEPH1 Intron 0.05 TCGA-DC-6160-01 4 98480082 98480082 C T STPG2 3'UTR 0.43 TCGA-DC-6160-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.32 TCGA-DC-6160-01 5 112769168 112769168 C T TSSK1B 3'UTR 0.35 TCGA-DC-6160-01 5 13792154 13792154 C A DNAH5 Silent p.R2799R 0.28 TCGA-DC-6160-01 5 140049096 140049096 C T WDR55 Missense_Mutation p.R337W 0.38 deleterious(0.02) benign(0.014) TCGA-DC-6160-01 5 140502958 140502958 C T PCDHB4 Missense_Mutation p.R460C 0.33 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-DC-6160-01 5 148619347 148619347 G A ABLIM3 Missense_Mutation p.R367Q 0.38 deleterious(0.02) possibly_damaging(0.579) TCGA-DC-6160-01 5 169535190 169535190 C G FOXI1 Missense_Mutation p.L238V 0.06 tolerated(0.31) benign(0.03) TCGA-DC-6160-01 5 182337 182337 G A PLEKHG4B Missense_Mutation p.V1239I 0.25 tolerated(1) benign(0.001) TCGA-DC-6160-01 5 33936697 33936697 C T RXFP3 5'UTR 0.50 TCGA-DC-6160-01 5 80408616 80408616 G T RASGRF2 Missense_Mutation p.A676S 0.23 tolerated(0.57) benign(0.039) TCGA-DC-6160-01 6 29079941 29079941 G A OR2J3 Missense_Mutation p.E92K 0.03 tolerated(0.16) benign(0.007) TCGA-DC-6160-01 6 32029492 32029492 C T TNXB Missense_Mutation p.E2392K 0.28 benign(0.013) TCGA-DC-6160-01 6 51524215 51524215 G T PKHD1 Nonsense_Mutation p.S3570* 0.32 TCGA-DC-6160-01 6 73904449 73904449 C T KCNQ5 Missense_Mutation p.A723V 0.40 deleterious(0.02) benign(0.185) TCGA-DC-6160-01 6 74481166 74481166 G T CD109 Missense_Mutation p.W563C 0.15 deleterious(0) probably_damaging(0.996) TCGA-DC-6160-01 6 75843057 75843057 C T COL12A1 Missense_Mutation p.V1916I 0.29 benign(0.169) TCGA-DC-6160-01 6 83963402 83963402 G A ME1 Missense_Mutation p.R254C 0.36 deleterious(0) possibly_damaging(0.539) TCGA-DC-6160-01 7 150878272 150878272 G A ASB10 Silent p.D286D 0.41 TCGA-DC-6160-01 7 30692929 30692929 G A CRHR2 3'UTR 0.30 TCGA-DC-6160-01 7 35942737 35942737 G T SEPT7 Nonsense_Mutation p.E397* 0.30 TCGA-DC-6160-01 7 45003711 45003711 C T MYO1G Silent p.Q894Q 0.41 TCGA-DC-6160-01 8 101076146 101076146 C G RGS22 Missense_Mutation p.D284H 0.36 deleterious(0) probably_damaging(1) TCGA-DC-6160-01 8 116616445 116616445 A T TRPS1 Missense_Mutation p.L584H 0.28 tolerated_low_confidence(0.07) probably_damaging(0.999) TCGA-DC-6160-01 8 23290531 23290531 G A ENTPD4 Missense_Mutation p.R587C 0.62 deleterious(0.03) probably_damaging(0.959) TCGA-DC-6160-01 8 52321748 52321748 G A PXDNL Silent p.H812H 0.38 TCGA-DC-6160-01 8 74464439 74464439 T C STAU2 Silent p.Q446Q 0.25 TCGA-DC-6160-01 9 107298357 107298358 - A OR13C3 Frame_Shift_Ins p.S247Lfs*81 0.34 TCGA-DC-6160-01 9 114184267 114184267 C T KIAA0368 Silent p.A641A 0.39 TCGA-DC-6160-01 9 138676638 138676638 G A KCNT1 Missense_Mutation p.R1020H 0.39 deleterious(0.01) benign(0.049) TCGA-DC-6160-01 9 32632961 32632961 G A TAF1L Missense_Mutation p.R873C 0.31 deleterious(0) probably_damaging(0.973) TCGA-DC-6160-01 X 101576753 101576753 G A NXF2 Missense_Mutation p.D417N 0.26 tolerated(0.17) benign(0.044) TCGA-DC-6160-01 X 107911595 107911595 C T COL4A5 Silent p.G1217G 0.63 TCGA-DC-6160-01 X 153032796 153032796 G A PLXNB3 Missense_Mutation p.A195T 0.64 tolerated(0.33) benign(0.019) TCGA-DC-6160-01 X 34148376 34148377 - G FAM47A Frame_Shift_Ins p.Y674Lfs*30 0.31 TCGA-DC-6681-01 10 114912092 114912092 T C TCF7L2 Missense_Mutation p.W388R 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DC-6681-01 10 22675815 22675815 C T SPAG6 Missense_Mutation p.A202V 0.24 deleterious(0) probably_damaging(1) TCGA-DC-6681-01 10 25861655 25861655 C A GPR158 Missense_Mutation p.A531E 0.24 deleterious(0.01) possibly_damaging(0.694) TCGA-DC-6681-01 10 73537647 73537647 G A C10orf54 5'Flank 0.23 TCGA-DC-6681-01 10 73767717 73767717 C T CHST3 Missense_Mutation p.R310C 0.42 deleterious(0) probably_damaging(1) TCGA-DC-6681-01 10 74033808 74033808 C A DDIT4 5'UTR 0.38 TCGA-DC-6681-01 10 92509158 92509158 C T HTR7 Missense_Mutation p.A245T 0.10 deleterious(0.05) probably_damaging(0.938) TCGA-DC-6681-01 11 10876209 10876209 T C ZBED5 Missense_Mutation p.N95S 0.22 tolerated(0.17) benign(0.001) TCGA-DC-6681-01 11 113270789 113270789 G A ANKK1 Missense_Mutation p.A700T 0.09 tolerated(0.08) benign(0.037) TCGA-DC-6681-01 11 126316659 126316659 C T KIRREL3 Missense_Mutation p.G374R 0.29 deleterious(0.02) probably_damaging(1) TCGA-DC-6681-01 11 128680804 128680804 C T FLI1 Missense_Mutation p.T427M 0.32 deleterious(0.05) benign(0.029) TCGA-DC-6681-01 11 33596419 33596419 C T KIAA1549L Missense_Mutation p.P1171S 0.28 deleterious(0.02) probably_damaging(0.974) TCGA-DC-6681-01 11 60899364 60899364 G A VPS37C Silent p.P332P 0.21 TCGA-DC-6681-01 11 64814952 64814952 C G NAALADL1 Missense_Mutation p.D532H 0.36 deleterious(0) probably_damaging(0.984) TCGA-DC-6681-01 12 109185877 109185877 C T SSH1 Intron 0.27 TCGA-DC-6681-01 12 123471337 123471337 C T PITPNM2 Silent p.T1151T 0.22 TCGA-DC-6681-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.22 deleterious(0) possibly_damaging(0.479) TCGA-DC-6681-01 12 39947933 39947933 C A ABCD2 Missense_Mutation p.W668C 0.27 deleterious(0) possibly_damaging(0.839) TCGA-DC-6681-01 12 7632575 7632575 C A CD163 Missense_Mutation p.A1121S 0.23 tolerated(0.87) benign(0.009) TCGA-DC-6681-01 14 106173748 106173748 G A IGHA1 Silent p.R273R 0.16 TCGA-DC-6681-01 14 45658453 45658453 C G FANCM Missense_Mutation p.S1743C 0.31 tolerated(0.1) possibly_damaging(0.906) TCGA-DC-6681-01 14 86092472 86092472 G A FLRT2 3'UTR 0.26 TCGA-DC-6681-01 14 95034582 95034582 A G SERPINA4 Missense_Mutation p.D347G 0.45 tolerated(0.05) possibly_damaging(0.57) TCGA-DC-6681-01 15 101024807 101024807 T C CERS3 Missense_Mutation p.S119G 0.12 tolerated(0.07) benign(0.329) TCGA-DC-6681-01 15 25940151 25940151 C T ATP10A Missense_Mutation p.R968H 0.36 tolerated(0.27) benign(0.001) TCGA-DC-6681-01 15 28929473 28929473 T C RP11-578F21.2 5'Flank 0.24 TCGA-DC-6681-01 15 42185497 42185497 C T SPTBN5 Missense_Mutation p.V67I 0.16 benign(0.013) TCGA-DC-6681-01 15 44166328 44166328 C T FRMD5 Missense_Mutation p.E490K 0.28 tolerated(0.54) benign(0.097) TCGA-DC-6681-01 15 66624280 66624280 C A DIS3L Missense_Mutation p.P868H 0.09 deleterious(0) possibly_damaging(0.467) TCGA-DC-6681-01 15 99452112 99452112 C T IGF1R Silent p.N482N 0.19 TCGA-DC-6681-01 17 70119696 70119697 - CC SOX9 Frame_Shift_Ins p.P235Hfs*19 0.36 TCGA-DC-6681-01 18 48593406 48593406 G A SMAD4 Missense_Mutation p.G386D 0.36 deleterious(0.01) probably_damaging(1) TCGA-DC-6681-01 19 15905061 15905061 T C OR10H5 Missense_Mutation p.I68T 0.20 tolerated(0.32) benign(0.003) TCGA-DC-6681-01 19 3752950 3752950 G A APBA3 Silent p.A350A 0.12 TCGA-DC-6681-01 19 49132081 49132081 T C SPHK2 Missense_Mutation p.F339S 0.11 deleterious(0) possibly_damaging(0.844) TCGA-DC-6681-01 19 49377996 49377996 T C PPP1R15A Silent p.A502A 0.30 TCGA-DC-6681-01 19 55777262 55777262 G A HSPBP1 Silent p.A295A 0.26 TCGA-DC-6681-01 1 10231208 10231208 C T UBE4B Nonsense_Mutation p.R1116* 0.43 TCGA-DC-6681-01 1 113460434 113460434 G A SLC16A1 Silent p.I198I 0.08 TCGA-DC-6681-01 1 158153932 158153932 G A CD1D Missense_Mutation p.V334I 0.32 tolerated(1) benign(0) TCGA-DC-6681-01 1 198498268 198498268 T C ATP6V1G3 Silent p.V42V 0.10 TCGA-DC-6681-01 1 31465236 31465236 C - PUM1 Splice_Site p.X386_splice 0.32 TCGA-DC-6681-01 1 42922570 42922571 - TT PPCS Frame_Shift_Ins p.S113Ffs*5 0.41 TCGA-DC-6681-01 1 51930945 51930945 T C EPS15 Silent p.P121P 0.10 TCGA-DC-6681-01 1 91977399 91977399 C T CDC7 Missense_Mutation p.A164V 0.20 deleterious(0) probably_damaging(1) TCGA-DC-6681-01 1 94512603 94512603 G A ABCA4 Silent p.C930C 0.29 TCGA-DC-6681-01 20 20278851 20278851 G A C20orf26 Silent p.A1081A 0.12 TCGA-DC-6681-01 20 31023710 31023710 G A ASXL1 Nonsense_Mutation p.W1065* 0.23 TCGA-DC-6681-01 20 33875030 33875030 G A FAM83C Nonsense_Mutation p.R518* 0.55 TCGA-DC-6681-01 20 57430039 57430039 C T GNAS Silent p.D573D 0.15 TCGA-DC-6681-01 20 7894923 7894923 G A HAO1 Missense_Mutation p.R145W 0.15 deleterious(0.01) possibly_damaging(0.762) TCGA-DC-6681-01 21 27264060 27264060 T C APP Missense_Mutation p.T729A 0.44 deleterious(0.03) possibly_damaging(0.534) TCGA-DC-6681-01 21 34157230 34157230 G A C21orf49 Missense_Mutation p.M14I 0.16 benign(0.045) TCGA-DC-6681-01 21 46032564 46032564 G A KRTAP10-8 Missense_Mutation p.A183T 0.08 tolerated(0.09) unknown(0) TCGA-DC-6681-01 22 36055398 36055398 G A APOL6 Missense_Mutation p.A263T 0.26 tolerated(0.38) benign(0.113) TCGA-DC-6681-01 22 37480817 37480817 A G TMPRSS6 Missense_Mutation p.Y355H 0.16 tolerated(0.11) benign(0.011) TCGA-DC-6681-01 22 50437751 50437751 C T IL17REL Silent p.A190A 0.34 TCGA-DC-6681-01 2 168726083 168726083 C T B3GALT1 Silent p.S178S 0.39 TCGA-DC-6681-01 2 170684455 170684455 C T UBR3 Silent p.A146A 0.31 TCGA-DC-6681-01 2 27481175 27481175 C T SLC30A3 Missense_Mutation p.G93D 0.32 deleterious(0) probably_damaging(0.981) TCGA-DC-6681-01 2 27565858 27565858 A C GTF3C2 Missense_Mutation p.L135R 0.17 tolerated(0.38) possibly_damaging(0.567) TCGA-DC-6681-01 2 69093667 69093667 C T BMP10 Missense_Mutation p.R124Q 0.27 tolerated(0.25) possibly_damaging(0.577) TCGA-DC-6681-01 2 71163089 71163089 C T ATP6V1B1 Missense_Mutation p.A2V 0.22 deleterious_low_confidence(0) benign(0.046) TCGA-DC-6681-01 2 86333384 86333384 C G PTCD3 Missense_Mutation p.S5C 0.24 tolerated_low_confidence(0.07) benign(0.235) TCGA-DC-6681-01 3 141535712 141535712 G A GRK7 Silent p.G494G 0.29 TCGA-DC-6681-01 3 35785987 35785987 C T ARPP21 Intron 0.33 TCGA-DC-6681-01 3 51246252 51246252 G A DOCK3 Missense_Mutation p.R362Q 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-DC-6681-01 3 64139008 64139008 G A PRICKLE2 Nonsense_Mutation p.R213* 0.48 TCGA-DC-6681-01 4 158254091 158254091 G C GRIA2 Missense_Mutation p.A335P 0.14 tolerated(0.3) benign(0.035) TCGA-DC-6681-01 4 206558 206558 A T ZNF876P RNA 0.42 TCGA-DC-6681-01 4 41987928 41987928 C T DCAF4L1 3'UTR 0.32 TCGA-DC-6681-01 4 5053527 5053527 G A STK32B 5'UTR 0.38 TCGA-DC-6681-01 4 6037713 6037713 C T JAKMIP1 Missense_Mutation p.R766H 0.19 deleterious(0) possibly_damaging(0.795) TCGA-DC-6681-01 4 96761377 96761377 C T PDHA2 Missense_Mutation p.R26C 0.26 tolerated(0.3) benign(0) TCGA-DC-6681-01 4 9784489 9784489 C T DRD5 Missense_Mutation p.A279V 0.28 tolerated(0.23) benign(0.024) TCGA-DC-6681-01 5 112151204 112151204 C T APC Nonsense_Mutation p.R283* 0.17 TCGA-DC-6681-01 5 112154723 112154723 C T APC Nonsense_Mutation p.R332* 0.28 TCGA-DC-6681-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.28 TCGA-DC-6681-01 5 112769190 112769190 G A TSSK1B 3'UTR 0.12 TCGA-DC-6681-01 5 132939653 132939653 G A FSTL4 Silent p.L8L 0.21 TCGA-DC-6681-01 5 140729848 140729848 C T PCDHGB1 Silent p.A7A 0.39 TCGA-DC-6681-01 5 140744090 140744090 C T PCDHGA5 Missense_Mutation p.R65C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DC-6681-01 5 154278135 154278135 C T GEMIN5 Silent p.T1070T 0.20 TCGA-DC-6681-01 5 33588803 33588803 C T ADAMTS12 Silent p.P922P 0.30 TCGA-DC-6681-01 5 82352831 82352831 C T TMEM167A 3'UTR 0.40 TCGA-DC-6681-01 6 149826571 149826571 A G PPIL4 3'UTR 0.34 TCGA-DC-6681-01 6 152201874 152201874 G A ESR1 Missense_Mutation p.R243H 0.16 deleterious(0) probably_damaging(1) TCGA-DC-6681-01 6 27879916 27879917 - C OR2B2 Frame_Shift_Ins p.F61Cfs*4 0.23 TCGA-DC-6681-01 6 32170369 32170369 T C NOTCH4 Missense_Mutation p.E1080G 0.29 tolerated(0.09) probably_damaging(0.971) TCGA-DC-6681-01 6 52993290 52993290 G A GCM1 Missense_Mutation p.P342L 0.24 deleterious(0.03) possibly_damaging(0.655) TCGA-DC-6681-01 6 90581037 90581037 G A CASP8AP2 RNA 0.27 TCGA-DC-6681-01 7 103214611 103214611 C G RELN Missense_Mutation p.G1480A 0.25 tolerated(0.08) probably_damaging(0.971) TCGA-DC-6681-01 7 112112899 112112899 A G IFRD1 Missense_Mutation p.I417V 0.26 tolerated(0.25) benign(0.217) TCGA-DC-6681-01 7 32798922 32798922 A G RP11-225B17.2 RNA 0.27 TCGA-DC-6681-01 7 41729983 41729983 C T INHBA Silent p.P182P 0.42 TCGA-DC-6681-01 7 44027770 44027770 G A POLR2J4 RNA 0.40 TCGA-DC-6681-01 7 69583190 69583190 C T AUTS2 Missense_Mutation p.R199W 0.25 tolerated(0.07) probably_damaging(0.988) TCGA-DC-6681-01 7 70233014 70233014 A C AUTS2 Missense_Mutation p.D565A 0.25 deleterious(0) probably_damaging(0.919) TCGA-DC-6681-01 7 86415812 86415812 G A GRM3 Missense_Mutation p.R235H 0.35 deleterious(0) probably_damaging(0.991) TCGA-DC-6681-01 9 121929229 121929229 A G BRINP1 3'UTR 0.20 TCGA-DC-6681-01 9 434900 434900 C T DOCK8 Silent p.A1668A 0.26 TCGA-DC-6681-01 X 120182714 120182714 C T GLUD2 Silent p.N392N 0.20 TCGA-DC-6681-01 X 69502086 69502086 G A RAB41 Missense_Mutation p.D7N 0.32 tolerated_low_confidence(0.71) benign(0) TCGA-DC-6681-01 X 92966192 92966192 A T FAM133A 3'UTR 0.25 TCGA-DC-6682-01 10 115804357 115804357 C T ADRB1 Missense_Mutation p.R156C 0.18 deleterious(0) probably_damaging(0.984) TCGA-DC-6682-01 10 118891671 118891671 G A VAX1 3'Flank 0.25 TCGA-DC-6682-01 10 134011931 134011931 T C DPYSL4 Silent p.L212L 0.20 TCGA-DC-6682-01 10 16990490 16990490 G A CUBN Silent p.T1732T 0.15 TCGA-DC-6682-01 10 22856687 22856687 C T PIP4K2A Intron 0.36 TCGA-DC-6682-01 10 28030376 28030376 C T MKX Silent p.A82A 0.41 TCGA-DC-6682-01 10 3175426 3175426 G A PFKP Missense_Mutation p.D648N 0.22 deleterious(0) probably_damaging(0.947) TCGA-DC-6682-01 10 61718999 61718999 G A C10orf40 5'UTR 0.18 TCGA-DC-6682-01 11 117374606 117374606 G A DSCAML1 Silent p.N831N 0.13 TCGA-DC-6682-01 11 119045975 119045975 C T NLRX1 Silent p.L555L 0.16 TCGA-DC-6682-01 11 119215650 119215650 C T MFRP Missense_Mutation p.V236I 0.30 tolerated(0.25) benign(0.061) TCGA-DC-6682-01 11 121033054 121033054 C T TECTA Silent p.T1749T 0.34 TCGA-DC-6682-01 11 125255444 125255444 C A PKNOX2 Intron 0.24 TCGA-DC-6682-01 11 18231631 18231631 G A RP11-113D6.10 Silent p.T139T 0.33 TCGA-DC-6682-01 11 3383053 3383053 G A ZNF195 Missense_Mutation p.S98L 0.40 tolerated(0.29) benign(0.307) TCGA-DC-6682-01 11 56143818 56143818 C T OR8U1 Missense_Mutation p.T240M 0.32 deleterious(0) probably_damaging(1) TCGA-DC-6682-01 11 65380783 65380783 C T MAP3K11 Missense_Mutation p.D149N 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-DC-6682-01 11 66062265 66062265 G A TMEM151A Missense_Mutation p.R183H 0.18 deleterious(0) probably_damaging(0.998) TCGA-DC-6682-01 11 71249587 71249587 C A KRTAP5-8 Nonsense_Mutation p.C162* 0.33 TCGA-DC-6682-01 11 71712581 71712581 G A IL18BP Missense_Mutation p.V164I 0.32 tolerated(0.51) benign(0.002) TCGA-DC-6682-01 11 71929609 71929609 G A FOLR2 5'UTR 0.34 TCGA-DC-6682-01 11 7818452 7818452 G A OR5P2 Missense_Mutation p.T13M 0.35 deleterious(0.02) possibly_damaging(0.598) TCGA-DC-6682-01 12 10772676 10772676 T C STYK1 3'UTR 0.11 TCGA-DC-6682-01 12 122217311 122217311 C T TMEM120B 3'UTR 0.50 TCGA-DC-6682-01 12 13128389 13128389 T G HEBP1 Missense_Mutation p.E141D 0.33 tolerated(0.1) possibly_damaging(0.793) TCGA-DC-6682-01 12 28116381 28116381 G A PTHLH Nonsense_Mutation p.R142* 0.27 TCGA-DC-6682-01 12 49427582 49427582 G A KMT2D Missense_Mutation p.L3636F 0.17 probably_damaging(0.986) TCGA-DC-6682-01 12 50472748 50472748 G A ASIC1 Missense_Mutation p.A346T 0.29 deleterious(0) probably_damaging(0.997) TCGA-DC-6682-01 12 53012172 53012172 C T KRT73 Missense_Mutation p.R46Q 0.17 tolerated(0.1) benign(0.005) TCGA-DC-6682-01 12 59270243 59270243 T C LRIG3 Silent p.P893P 0.41 TCGA-DC-6682-01 13 103518380 103518380 G A ERCC5 Intron 0.58 TCGA-DC-6682-01 13 32367190 32367190 T C RXFP2 Missense_Mutation p.I584T 0.19 tolerated(0.51) benign(0.008) TCGA-DC-6682-01 13 46549583 46549583 C A ZC3H13 Missense_Mutation p.R768L 0.47 unknown(0) TCGA-DC-6682-01 13 88328697 88328697 G T SLITRK5 Missense_Mutation p.D352Y 0.14 deleterious(0.01) benign(0.265) TCGA-DC-6682-01 14 102476614 102476614 C G DYNC1H1 Missense_Mutation p.L2075V 0.28 probably_damaging(0.942) TCGA-DC-6682-01 14 26941584 26941584 G T NOVA1 Missense_Mutation p.S154Y 0.11 tolerated(0.41) unknown(0) TCGA-DC-6682-01 14 67669810 67669810 G A FAM71D Splice_Site p.X54_splice 0.27 TCGA-DC-6682-01 14 86090320 86090320 C T FLRT2 3'UTR 0.15 TCGA-DC-6682-01 15 27182372 27182372 C T GABRA5 Silent p.N207N 0.21 TCGA-DC-6682-01 15 40581105 40581105 C T PLCB2 Silent p.A1123A 0.32 TCGA-DC-6682-01 15 40751724 40751724 C T BAHD1 Missense_Mutation p.P354L 0.42 deleterious(0) benign(0.006) TCGA-DC-6682-01 15 41797016 41797016 G - LTK Frame_Shift_Del p.P692Qfs*65 0.43 TCGA-DC-6682-01 15 42479475 42479475 T G VPS39 Silent p.L176L 0.27 TCGA-DC-6682-01 15 43482525 43482525 C T CCNDBP1 Missense_Mutation p.P144L 0.22 tolerated(0.28) benign(0.015) TCGA-DC-6682-01 15 90771850 90771850 C T SEMA4B Missense_Mutation p.S830L 0.29 deleterious(0) probably_damaging(0.999) TCGA-DC-6682-01 16 15690399 15690400 - A KIAA0430 3'UTR 0.31 TCGA-DC-6682-01 16 16263583 16263583 G A ABCC6 Missense_Mutation p.A972V 0.32 deleterious(0.03) benign(0.082) TCGA-DC-6682-01 16 20817746 20817746 T C ERI2 Missense_Mutation p.T3A 0.17 deleterious(0.01) possibly_damaging(0.477) TCGA-DC-6682-01 16 23392044 23392044 C T SCNN1B Silent p.T615T 0.27 TCGA-DC-6682-01 16 30958224 30958224 C T FBXL19 Missense_Mutation p.P621S 0.25 deleterious(0.03) possibly_damaging(0.901) TCGA-DC-6682-01 16 3367309 3367309 G A ZNF75A Missense_Mutation p.A111T 0.09 tolerated(1) benign(0.001) TCGA-DC-6682-01 16 56466485 56466485 A G NUDT21 3'UTR 0.33 TCGA-DC-6682-01 16 67440242 67440242 C T ZDHHC1 Missense_Mutation p.R38Q 0.25 tolerated(0.06) benign(0.189) TCGA-DC-6682-01 16 89357573 89357573 C T ANKRD11 Missense_Mutation p.R82Q 0.23 possibly_damaging(0.885) TCGA-DC-6682-01 16 90001587 90001587 C T TUBB3 Missense_Mutation p.P243L 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.879) TCGA-DC-6682-01 17 1028683 1028683 G A ABR Silent p.D27D 0.50 TCGA-DC-6682-01 17 16843766 16843767 - C TNFRSF13B Frame_Shift_Ins p.L169Afs*68 0.40 TCGA-DC-6682-01 17 19186369 19186369 C T EPN2 5'UTR 0.31 TCGA-DC-6682-01 17 21477662 21477662 G A AC138710.1 5'Flank 0.78 TCGA-DC-6682-01 17 29161567 29161567 T C ATAD5 Silent p.T156T 0.12 TCGA-DC-6682-01 17 3182182 3182182 G A OR3A2 Silent p.T16T 0.40 TCGA-DC-6682-01 17 33456551 33456551 A C FNDC8 Silent p.P232P 0.09 TCGA-DC-6682-01 17 38249487 38249487 G A THRA Missense_Mutation p.R442H 0.26 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-DC-6682-01 17 41934519 41934519 C T CD300LG Missense_Mutation p.R294C 0.08 deleterious(0.01) benign(0.39) TCGA-DC-6682-01 17 47115649 47115649 G A IGF2BP1 Missense_Mutation p.R174Q 0.32 deleterious(0.05) probably_damaging(0.942) TCGA-DC-6682-01 17 57125156 57125156 C T TRIM37 Missense_Mutation p.D519N 0.21 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-DC-6682-01 17 73996423 73996423 C T TEN1 3'UTR 0.14 TCGA-DC-6682-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.42 deleterious(0) probably_damaging(1) TCGA-DC-6682-01 17 77081767 77081767 C T ENGASE Missense_Mutation p.P589L 0.09 tolerated(0.35) benign(0.001) TCGA-DC-6682-01 18 24445643 24445643 C A AQP4 Missense_Mutation p.R4I 0.25 deleterious_low_confidence(0) benign(0.012) TCGA-DC-6682-01 18 2891253 2891253 G T EMILIN2 Silent p.L376L 0.14 TCGA-DC-6682-01 18 3188780 3188780 C T MYOM1 Missense_Mutation p.R246Q 0.21 deleterious(0.01) probably_damaging(0.917) TCGA-DC-6682-01 18 61254562 61254562 G A SERPINB13 5'Flank 0.13 TCGA-DC-6682-01 19 16338426 16338426 C T AP1M1 Silent p.F259F 0.12 TCGA-DC-6682-01 19 17641677 17641677 C T FAM129C Nonsense_Mutation p.Q88* 0.19 TCGA-DC-6682-01 19 22270820 22270820 G C ZNF257 Missense_Mutation p.D90H 0.11 tolerated(0.07) benign(0.283) TCGA-DC-6682-01 19 38877875 38877875 G A GGN Silent p.S9S 0.18 TCGA-DC-6682-01 19 41271138 41271138 C T SNRPA 3'UTR 0.25 TCGA-DC-6682-01 19 45998253 45998253 G A RTN2 Silent p.D30D 0.22 TCGA-DC-6682-01 19 46997356 46997356 G T PNMAL2 Missense_Mutation p.A456D 0.26 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DC-6682-01 19 54720983 54720983 G A LILRB3 Silent p.Y626Y 0.16 TCGA-DC-6682-01 19 58058834 58058834 T A ZNF550 Nonsense_Mutation p.K219* 0.29 TCGA-DC-6682-01 19 58281200 58281200 C T ZNF586 5'UTR 0.15 TCGA-DC-6682-01 1 112525069 112525069 C T KCND3 Missense_Mutation p.V94M 0.13 deleterious(0) benign(0.235) TCGA-DC-6682-01 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.26 deleterious(0) possibly_damaging(0.726) TCGA-DC-6682-01 1 118166184 118166184 G A FAM46C Missense_Mutation p.A232T 0.50 deleterious(0.03) possibly_damaging(0.53) TCGA-DC-6682-01 1 1412699 1412699 C T ATAD3B Missense_Mutation p.T84M 0.29 deleterious(0) probably_damaging(0.995) TCGA-DC-6682-01 1 152192776 152192776 C A HRNR Silent p.G443G 0.23 TCGA-DC-6682-01 1 152280792 152280792 G T FLG Missense_Mutation p.S2190R 0.23 benign(0.307) TCGA-DC-6682-01 1 154218736 154218736 C G UBAP2L Missense_Mutation p.S300C 0.15 deleterious(0.01) unknown(0) TCGA-DC-6682-01 1 185062317 185062317 G C RNF2 Missense_Mutation p.E125Q 0.04 tolerated(0.14) benign(0.153) TCGA-DC-6682-01 1 197396918 197396918 G A CRB1 Silent p.T821T 0.22 TCGA-DC-6682-01 1 228346356 228346356 C T GJC2 Silent p.R299R 0.20 TCGA-DC-6682-01 1 248366859 248366859 T A OR2M3 Missense_Mutation p.F164I 0.07 deleterious(0.05) benign(0.034) TCGA-DC-6682-01 1 43647501 43647501 C A WDR65 Missense_Mutation p.Q152K 0.09 tolerated(0.3) benign(0.352) TCGA-DC-6682-01 1 52889630 52889630 G C ZCCHC11 Missense_Mutation p.P1639A 0.27 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-DC-6682-01 1 55182312 55182312 T C TTC4 Missense_Mutation p.S51P 0.11 deleterious(0.05) benign(0.005) TCGA-DC-6682-01 1 86203133 86203133 G C COL24A1 Missense_Mutation p.F1576L 0.19 tolerated(0.09) probably_damaging(0.999) TCGA-DC-6682-01 1 97658647 97658647 C A DPYD Missense_Mutation p.R867L 0.34 tolerated(0.24) benign(0) TCGA-DC-6682-01 20 25457711 25457711 G A NINL Missense_Mutation p.A739V 0.36 tolerated(0.32) benign(0.001) TCGA-DC-6682-01 20 31606462 31606462 G A BPIFB2 Missense_Mutation p.G230D 0.14 deleterious(0) probably_damaging(0.996) TCGA-DC-6682-01 20 43378887 43378887 C T KCNK15 Missense_Mutation p.A134V 0.26 tolerated(0.11) benign(0.012) TCGA-DC-6682-01 20 47874009 47874009 T G ZNFX1 Missense_Mutation p.D870A 0.08 deleterious(0.04) benign(0.328) TCGA-DC-6682-01 21 32119388 32119388 T G KRTAP21-2 Missense_Mutation p.T45P 0.32 tolerated_low_confidence(0.22) unknown(0) TCGA-DC-6682-01 21 40568294 40568294 C T BRWD1 Intron 0.28 TCGA-DC-6682-01 22 19363215 19363215 G A HIRA Missense_Mutation p.R572W 0.29 deleterious(0) probably_damaging(0.991) TCGA-DC-6682-01 22 41513646 41513646 C T EP300 Nonsense_Mutation p.Q184* 0.27 TCGA-DC-6682-01 22 50617505 50617505 G A PANX2 Silent p.A611A 0.37 TCGA-DC-6682-01 22 50946857 50946857 G T NCAPH2 Missense_Mutation p.G31C 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-DC-6682-01 2 132257871 132257871 G A AC093838.4 RNA 0.33 TCGA-DC-6682-01 2 158115757 158115757 G A GALNT5 Missense_Mutation p.G388E 0.35 tolerated(0.17) benign(0.02) TCGA-DC-6682-01 2 162267972 162267972 T C PSMD14 3'UTR 0.42 TCGA-DC-6682-01 2 165994389 165994389 C T SCN3A Silent p.L797L 0.20 TCGA-DC-6682-01 2 174777881 174777881 C T SP3 Missense_Mutation p.R649H 0.13 deleterious(0) benign(0.212) TCGA-DC-6682-01 2 197208380 197208380 C T HECW2 Splice_Site p.X134_splice 0.06 TCGA-DC-6682-01 2 201281141 201281142 - A SPATS2L Frame_Shift_Ins p.K66Efs*4 0.24 TCGA-DC-6682-01 2 211163165 211163165 G A MYL1 Silent p.L95L 0.29 TCGA-DC-6682-01 2 220073690 220073690 C T ZFAND2B Intron 0.21 TCGA-DC-6682-01 2 220077985 220077985 C T ABCB6 Missense_Mutation p.V595M 0.11 deleterious(0.01) probably_damaging(0.957) TCGA-DC-6682-01 2 227915822 227915822 G A COL4A4 Silent p.Y1007Y 0.32 TCGA-DC-6682-01 2 230652313 230652313 G T TRIP12 Silent p.R1560R 0.09 TCGA-DC-6682-01 2 25875497 25875497 G A DTNB Silent p.T11T 0.13 TCGA-DC-6682-01 2 31805822 31805822 C T SRD5A2 RNA 0.13 TCGA-DC-6682-01 2 39249842 39249842 C T SOS1 Missense_Mutation p.R576K 0.11 tolerated(0.35) benign(0.197) TCGA-DC-6682-01 2 84886194 84886194 C A DNAH6 Missense_Mutation p.F1995L 0.37 deleterious(0.01) benign(0.216) TCGA-DC-6682-01 3 10452333 10452333 G A ATP2B2 Silent p.S122S 0.35 TCGA-DC-6682-01 3 111432929 111432929 A G PLCXD2 Missense_Mutation p.I274V 0.37 tolerated(1) benign(0.115) TCGA-DC-6682-01 3 126180318 126180318 T C ZXDC Intron 0.11 TCGA-DC-6682-01 3 193081983 193081983 C T ATP13A5 Silent p.V50V 0.05 TCGA-DC-6682-01 3 25833044 25833045 - G OXSM Frame_Shift_Ins p.F178Lfs*5 0.17 TCGA-DC-6682-01 3 35833957 35833957 A G ARPP21 Missense_Mutation p.N707D 0.39 tolerated(0.23) benign(0.02) TCGA-DC-6682-01 3 41266679 41266679 T C CTNNB1 Missense_Mutation p.L159P 0.47 deleterious(0) probably_damaging(0.995) TCGA-DC-6682-01 3 77147195 77147195 C T ROBO2 Missense_Mutation p.P47L 0.50 deleterious(0) unknown(0) TCGA-DC-6682-01 3 78987978 78987978 G C ROBO1 Missense_Mutation p.A91G 0.47 deleterious(0) probably_damaging(0.922) TCGA-DC-6682-01 4 126238491 126238491 G A FAT4 Missense_Mutation p.E309K 0.16 probably_damaging(0.976) TCGA-DC-6682-01 4 13339018 13339018 A T HSP90AB2P RNA 0.35 TCGA-DC-6682-01 4 153249385 153249385 G A FBXW7 Missense_Mutation p.R465C 0.68 deleterious(0) probably_damaging(1) TCGA-DC-6682-01 4 154504794 154504794 T G KIAA0922 Missense_Mutation p.F344V 0.11 deleterious(0) probably_damaging(0.999) TCGA-DC-6682-01 4 159091911 159091911 C A FAM198B Missense_Mutation p.R206M 0.33 deleterious(0) possibly_damaging(0.702) TCGA-DC-6682-01 4 165879820 165879820 G A FAM218A 3'UTR 0.13 TCGA-DC-6682-01 4 4228459 4228459 G A OTOP1 Missense_Mutation p.R45W 0.36 deleterious(0.01) unknown(0) TCGA-DC-6682-01 4 8211522 8211522 C G SH3TC1 Missense_Mutation p.P74A 0.28 tolerated(0.4) benign(0.352) TCGA-DC-6682-01 5 112163644 112163644 A - APC Frame_Shift_Del p.G524Afs*3 0.32 TCGA-DC-6682-01 5 11384790 11384790 C T CTNND2 Silent p.P388P 0.44 TCGA-DC-6682-01 5 140182324 140182324 C T PCDHA3 Silent p.S514S 0.29 TCGA-DC-6682-01 5 140740557 140740557 C T PCDHGB2 Silent p.D285D 0.47 TCGA-DC-6682-01 5 140811649 140811649 C T PCDHGA12 Silent p.N441N 0.45 TCGA-DC-6682-01 5 156649962 156649962 C T ITK Silent p.N195N 0.46 TCGA-DC-6682-01 5 171471859 171471859 G A STK10 3'UTR 0.12 TCGA-DC-6682-01 5 33549336 33549336 C T ADAMTS12 Silent p.A1426A 0.32 TCGA-DC-6682-01 5 34945131 34945131 G A DNAJC21 Splice_Site p.X381_splice 0.11 TCGA-DC-6682-01 5 39202368 39202368 C A FYB Missense_Mutation p.R242M 0.38 deleterious(0) possibly_damaging(0.547) TCGA-DC-6682-01 5 5461211 5461211 A G KIAA0947 Silent p.L588L 0.13 TCGA-DC-6682-01 5 65105372 65105372 G A NLN Missense_Mutation p.V520M 0.14 deleterious(0) probably_damaging(0.995) TCGA-DC-6682-01 5 66480370 66480370 G A CD180 Missense_Mutation p.H101Y 0.13 tolerated(0.42) benign(0) TCGA-DC-6682-01 5 76621552 76621552 C A PDE8B Nonsense_Mutation p.C196* 0.31 TCGA-DC-6682-01 5 95729016 95729016 C T PCSK1 Missense_Mutation p.V651I 0.23 tolerated_low_confidence(0.25) benign(0) TCGA-DC-6682-01 6 116263658 116263658 T C FRK Silent p.T479T 0.25 TCGA-DC-6682-01 6 28540366 28540366 G C SCAND3 Silent p.A1100A 0.15 TCGA-DC-6682-01 6 29323830 29323830 G A OR5V1 Missense_Mutation p.T48M 0.18 tolerated(0.09) benign(0) TCGA-DC-6682-01 6 41774335 41774335 C T USP49 Silent p.P129P 0.82 TCGA-DC-6682-01 6 87928403 87928403 G A ZNF292 Silent p.P164P 0.15 TCGA-DC-6682-01 7 128477225 128477225 G A FLNC Missense_Mutation p.D205N 0.38 deleterious(0.02) benign(0.013) TCGA-DC-6682-01 7 1522322 1522322 G A INTS1 Missense_Mutation p.A1188V 0.17 tolerated(0.28) benign(0.003) TCGA-DC-6682-01 7 23017040 23017040 C A FAM126A Nonsense_Mutation p.E112* 0.11 TCGA-DC-6682-01 7 4014071 4014071 G A SDK1 Missense_Mutation p.G630R 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-DC-6682-01 7 45767797 45767797 G C SEPT7P2 RNA 0.10 TCGA-DC-6682-01 7 88963859 88963859 A C ZNF804B Missense_Mutation p.E521D 0.17 deleterious(0) benign(0.021) TCGA-DC-6682-01 8 10469327 10469327 C T RP1L1 Missense_Mutation p.G761R 0.28 possibly_damaging(0.806) TCGA-DC-6682-01 8 12957788 12957788 C T DLC1 Silent p.A686A 0.44 TCGA-DC-6682-01 8 53852539 53852539 C A NPBWR1 Silent p.S24S 0.31 TCGA-DC-6682-01 8 59500199 59500199 G A NSMAF Missense_Mutation p.A789V 0.10 deleterious(0.04) probably_damaging(0.99) TCGA-DC-6682-01 8 62370922 62370922 T G CLVS1 Missense_Mutation p.F266L 0.19 deleterious(0.03) benign(0.004) TCGA-DC-6682-01 8 77617289 77617289 A C ZFHX4 Silent p.I322I 0.12 TCGA-DC-6682-01 8 88298882 88298882 A G CNBD1 Missense_Mutation p.K342R 0.13 tolerated(0.23) probably_damaging(0.965) TCGA-DC-6682-01 8 99142441 99142441 G A POP1 Missense_Mutation p.R241Q 0.46 tolerated(0.13) benign(0.028) TCGA-DC-6682-01 9 111956583 111956583 C T EPB41L4B Missense_Mutation p.V714M 0.29 deleterious_low_confidence(0.02) benign(0.033) TCGA-DC-6682-01 9 123924138 123924138 A T CNTRL Silent p.L1698L 0.09 TCGA-DC-6682-01 9 124921921 124921921 C A NDUFA8 Missense_Mutation p.E12D 0.10 tolerated(0.13) benign(0.004) TCGA-DC-6682-01 9 127637257 127637257 C T ARPC5L Nonsense_Mutation p.R76* 0.10 TCGA-DC-6682-01 9 133907557 133907557 C T LAMC3 Silent p.G268G 0.11 TCGA-DC-6682-01 9 17464557 17464557 G C CNTLN Missense_Mutation p.R1156P 0.15 deleterious(0) probably_damaging(1) TCGA-DC-6682-01 9 90321826 90321826 C T DAPK1 Silent p.S1280S 0.16 TCGA-DC-6682-01 9 90342638 90342638 C T CTSL Silent p.Y40Y 0.16 TCGA-DC-6682-01 X 101381778 101381778 A T TCEAL2 Intron 0.25 TCGA-DC-6682-01 X 111700151 111700151 T C ZCCHC16 3'UTR 0.15 TCGA-DC-6682-01 X 118716593 118716593 G A UBE2A Missense_Mutation p.R95H 0.26 tolerated(0.06) benign(0.017) TCGA-DC-6682-01 X 134421516 134421516 C G ZNF75D Missense_Mutation p.E362D 0.31 tolerated(0.07) possibly_damaging(0.842) TCGA-DC-6682-01 X 153032489 153032489 C A PLXNB3 Silent p.G92G 0.41 TCGA-DC-6682-01 X 153648064 153648064 G A TAZ Missense_Mutation p.E188K 0.64 deleterious(0.01) benign(0.169) TCGA-DC-6682-01 X 47272000 47272000 C A ZNF157 Missense_Mutation p.N176K 0.70 tolerated(0.11) possibly_damaging(0.622) TCGA-DC-6682-01 X 55514071 55514071 C G USP51 Silent p.L434L 0.74 TCGA-DC-6682-01 X 55514076 55514076 G T USP51 Missense_Mutation p.H433N 0.24 deleterious(0.03) probably_damaging(0.932) TCGA-DC-6682-01 X 69637816 69637816 T C KIF4A Missense_Mutation p.C1112R 0.10 deleterious(0.01) benign(0.216) TCGA-DC-6683-01 10 114912188 114912188 C T TCF7L2 Missense_Mutation p.R420W 0.53 deleterious(0) probably_damaging(0.999) TCGA-DC-6683-01 10 43597981 43597981 C T RET Missense_Mutation p.R177W 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-DC-6683-01 11 11988507 11988507 G A DKK3 Nonsense_Mutation p.Q223* 0.27 TCGA-DC-6683-01 11 55418618 55418618 T C OR4S2 Missense_Mutation p.I80T 0.25 deleterious(0) possibly_damaging(0.588) TCGA-DC-6683-01 11 58190275 58190275 C T OR5B2 Missense_Mutation p.A154T 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.483) TCGA-DC-6683-01 11 62414063 62414063 C T GANAB Silent p.A3A 0.32 TCGA-DC-6683-01 11 64900445 64900445 A G SYVN1 Missense_Mutation p.L109P 0.10 deleterious(0) probably_damaging(0.947) TCGA-DC-6683-01 11 93431783 93431783 G A KIAA1731 Silent p.K1235K 0.38 TCGA-DC-6683-01 12 1137137 1137137 G T ERC1 Missense_Mutation p.R23M 0.31 deleterious(0) probably_damaging(0.992) TCGA-DC-6683-01 12 123466587 123466587 C T ARL6IP4 Missense_Mutation p.R308C 0.55 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DC-6683-01 12 124315193 124315193 G C DNAH10 Missense_Mutation p.D1380H 0.25 probably_damaging(0.918) TCGA-DC-6683-01 12 130851689 130851689 C T PIWIL1 Missense_Mutation p.T736M 0.35 deleterious(0) probably_damaging(0.912) TCGA-DC-6683-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.29 deleterious(0.04) probably_damaging(0.993) TCGA-DC-6683-01 12 46123634 46123634 G A ARID2 Silent p.T5T 0.41 TCGA-DC-6683-01 12 78583787 78583787 A T NAV3 Missense_Mutation p.S2005C 0.22 tolerated(0.08) probably_damaging(0.94) TCGA-DC-6683-01 12 8687343 8687344 TC - CLEC4E Frame_Shift_Del p.D184Lfs*10 0.11 TCGA-DC-6683-01 12 9251204 9251204 G A A2M Missense_Mutation p.S617L 0.54 tolerated(0.07) benign(0.009) TCGA-DC-6683-01 13 113052451 113052451 A G SPACA7 Silent p.L80L 0.14 TCGA-DC-6683-01 13 23913855 23913855 G T SACS Missense_Mutation p.P1387H 0.07 possibly_damaging(0.855) TCGA-DC-6683-01 13 37578694 37578694 C T EXOSC8 Silent p.Y78Y 0.33 TCGA-DC-6683-01 14 105352895 105352895 C T CEP170B Silent p.P773P 0.32 TCGA-DC-6683-01 14 63747827 63747827 G A RHOJ Missense_Mutation p.V126M 0.32 deleterious(0) possibly_damaging(0.608) TCGA-DC-6683-01 14 75936048 75936048 T C JDP2 Missense_Mutation p.L132P 0.14 deleterious(0) probably_damaging(0.958) TCGA-DC-6683-01 15 101188573 101188573 A G ASB7 Missense_Mutation p.Q288R 0.17 tolerated_low_confidence(0.53) benign(0) TCGA-DC-6683-01 15 43817611 43817611 G A MAP1A Missense_Mutation p.E1314K 0.29 possibly_damaging(0.533) TCGA-DC-6683-01 15 52632496 52632496 T C MYO5A Missense_Mutation p.N1379S 0.17 tolerated(0.18) benign(0.269) TCGA-DC-6683-01 15 54305356 54305356 T A UNC13C Missense_Mutation p.F86I 0.32 deleterious_low_confidence(0.02) possibly_damaging(0.762) TCGA-DC-6683-01 15 80845104 80845104 T C ARNT2 Missense_Mutation p.Y360H 0.11 deleterious(0.01) possibly_damaging(0.812) TCGA-DC-6683-01 16 51176035 51176035 G A SALL1 Missense_Mutation p.P33L 0.44 tolerated(0.09) benign(0.013) TCGA-DC-6683-01 17 2202717 2202717 G A SMG6 Missense_Mutation p.R444W 0.50 deleterious(0.01) probably_damaging(0.973) TCGA-DC-6683-01 17 33875615 33875615 T C SLFN14 Missense_Mutation p.I794M 0.22 tolerated(0.75) benign(0.026) TCGA-DC-6683-01 17 36483854 36483854 C T GPR179 Silent p.L1866L 0.35 TCGA-DC-6683-01 17 41571093 41571093 C T DHX8 Missense_Mutation p.R351W 0.32 deleterious(0) benign(0.008) TCGA-DC-6683-01 17 64880888 64880888 C T CACNG5 Intron 0.25 TCGA-DC-6683-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.53 deleterious(0) probably_damaging(1) TCGA-DC-6683-01 17 78444822 78444822 C A NPTX1 Missense_Mutation p.G364C 0.49 deleterious(0) probably_damaging(1) TCGA-DC-6683-01 17 80888521 80888521 T C TBCD Splice_Site p.X1038_splice 0.08 TCGA-DC-6683-01 18 29797058 29797058 C T MEP1B Nonsense_Mutation p.R622* 0.22 TCGA-DC-6683-01 18 44098203 44098203 G A LOXHD1 Missense_Mutation p.T652M 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-DC-6683-01 19 13211922 13211922 A G LYL1 Missense_Mutation p.C22R 0.12 tolerated_low_confidence(0.27) benign(0.003) TCGA-DC-6683-01 19 37130436 37130439 TTTC GTA ZNF461 Frame_Shift_Del p.E270Yfs*159 0.57 TCGA-DC-6683-01 19 43233949 43233949 T A PSG3 Silent p.P323P 0.24 TCGA-DC-6683-01 19 47192949 47192949 G T PRKD2 Silent p.R606R 0.13 TCGA-DC-6683-01 19 55258812 55258812 A T KIR2DL3 Silent p.S230S 0.57 TCGA-DC-6683-01 19 58371211 58371211 C G ZNF587 Missense_Mutation p.H477Q 0.22 deleterious(0.04) benign(0.003) TCGA-DC-6683-01 1 1374552 1374552 C T VWA1 Silent p.G241G 0.42 TCGA-DC-6683-01 1 152552222 152552222 C T LCE3D Missense_Mutation p.R64Q 0.25 tolerated_low_confidence(0.12) unknown(0) TCGA-DC-6683-01 1 155838231 155838232 - A SYT11 Frame_Shift_Ins p.A173Sfs*17 0.12 TCGA-DC-6683-01 1 160769605 160769605 G A LY9 Missense_Mutation p.V63M 0.16 deleterious(0.02) possibly_damaging(0.64) TCGA-DC-6683-01 1 167097495 167097495 C T DUSP27 Missense_Mutation p.R1043C 0.34 tolerated(0.14) benign(0.017) TCGA-DC-6683-01 1 180257477 180257477 T G ACBD6 3'UTR 0.22 TCGA-DC-6683-01 1 180366655 180366655 C T ACBD6 Missense_Mutation p.C220Y 0.51 tolerated(0.81) possibly_damaging(0.567) TCGA-DC-6683-01 1 202273693 202273693 G T LGR6 Silent p.L335L 0.27 TCGA-DC-6683-01 1 237666611 237666611 C T RYR2 Nonsense_Mutation p.R807* 0.32 TCGA-DC-6683-01 1 78435700 78435700 C A FUBP1 Splice_Site p.X41_splice 0.26 TCGA-DC-6683-01 1 91404261 91404261 G C ZNF644 Missense_Mutation p.Q884E 0.06 tolerated(0.32) benign(0.007) TCGA-DC-6683-01 20 2779441 2779441 C T CPXM1 Missense_Mutation p.V91M 0.69 deleterious_low_confidence(0.03) possibly_damaging(0.646) TCGA-DC-6683-01 20 31805292 31805292 G A BPIFA3 5'UTR 0.73 TCGA-DC-6683-01 20 57430663 57430663 C T GNAS Intron 0.33 TCGA-DC-6683-01 21 28210258 28210258 A G ADAMTS1 Silent p.S848S 0.25 TCGA-DC-6683-01 22 21346070 21346070 C T LZTR1 Silent p.D315D 0.36 TCGA-DC-6683-01 22 51012953 51012953 C T CPT1B Missense_Mutation p.R285H 0.27 deleterious(0) possibly_damaging(0.613) TCGA-DC-6683-01 2 109384704 109384704 G T RANBP2 Missense_Mutation p.S2570I 0.44 tolerated(0.19) benign(0.004) TCGA-DC-6683-01 2 179605073 179605073 G C TTN Nonsense_Mutation p.S4296* 0.22 TCGA-DC-6683-01 2 219922168 219922168 G A IHH Silent p.C188C 0.18 TCGA-DC-6683-01 2 220250689 220250689 C T DNPEP Splice_Site p.X197_splice 0.29 TCGA-DC-6683-01 2 228882373 228882373 C T SPHKAP Missense_Mutation p.R1066Q 0.70 deleterious(0.02) probably_damaging(0.989) TCGA-DC-6683-01 2 233344869 233344869 C A ECEL1 Silent p.V774V 0.42 TCGA-DC-6683-01 2 238268750 238268750 G A COL6A3 Missense_Mutation p.P2088L 0.17 probably_damaging(0.997) TCGA-DC-6683-01 2 27886950 27886950 T C SLC4A1AP Missense_Mutation p.S111P 0.11 tolerated(1) benign(0.001) TCGA-DC-6683-01 2 3358401 3358401 G A TSSC1 Missense_Mutation p.R16C 0.30 deleterious(0) probably_damaging(0.919) TCGA-DC-6683-01 2 55086775 55086775 G A EML6 Missense_Mutation p.V588I 0.21 tolerated(0.19) benign(0.192) TCGA-DC-6683-01 3 138664470 138664470 G A FOXL2 Silent p.S365S 0.43 TCGA-DC-6683-01 3 154138852 154138852 A T GPR149 Missense_Mutation p.S533R 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-DC-6683-01 3 168802833 168802833 T C MECOM Splice_Site p.X1073_splice 0.12 TCGA-DC-6683-01 3 194080827 194080827 G A LRRC15 Missense_Mutation p.L322F 0.54 deleterious(0) probably_damaging(1) TCGA-DC-6683-01 3 19947113 19947113 T A EFHB Missense_Mutation p.M473L 0.47 tolerated(0.25) benign(0.004) TCGA-DC-6683-01 3 51994283 51994283 G A PCBP4 Silent p.T103T 0.62 TCGA-DC-6683-01 3 9036107 9036107 G A SRGAP3 Silent p.R776R 0.57 TCGA-DC-6683-01 4 119685985 119685985 T C SEC24D Missense_Mutation p.E423G 0.09 deleterious(0.02) benign(0.188) TCGA-DC-6683-01 4 138442723 138442723 C T PCDH18 Silent p.T956T 0.12 TCGA-DC-6683-01 4 25156721 25156721 T A SEPSECS Silent p.T200T 0.50 TCGA-DC-6683-01 6 142764633 142764633 G T GPR126 Missense_Mutation p.S1245I 0.27 deleterious(0.05) probably_damaging(0.964) TCGA-DC-6683-01 6 49578836 49578836 C A RHAG Missense_Mutation p.R323M 0.11 tolerated(0.06) benign(0.062) TCGA-DC-6683-01 7 116414947 116414947 A G MET Missense_Mutation p.N1032S 0.09 tolerated(0.63) possibly_damaging(0.529) TCGA-DC-6683-01 7 142334794 142334794 C T TRBV20-1 Silent p.Y72Y 0.14 TCGA-DC-6683-01 7 90043306 90043306 T C CLDN12 3'UTR 0.33 TCGA-DC-6683-01 8 110257626 110257626 C A NUDCD1 Missense_Mutation p.D462Y 0.14 deleterious(0) probably_damaging(1) TCGA-DC-6683-01 8 49642320 49642320 C T EFCAB1 Missense_Mutation p.E144K 0.34 deleterious(0) probably_damaging(0.999) TCGA-DC-6683-01 9 107298658 107298658 C G OR13C3 Missense_Mutation p.G146A 0.14 tolerated(0.84) benign(0.339) TCGA-DC-6683-01 9 130374667 130374667 A G STXBP1 5'UTR 0.13 TCGA-DC-6683-01 9 34725873 34725873 G C FAM205A Missense_Mutation p.P455R 0.14 deleterious(0) benign(0.035) TCGA-DC-6683-01 X 114425850 114425850 G A RBMXL3 Missense_Mutation p.D616N 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-DC-6683-01 X 75649720 75649720 A G MAGEE1 Missense_Mutation p.E466G 0.10 deleterious(0.01) benign(0.291) TCGA-DC-6683-01 X 75649956 75649956 A C MAGEE1 Silent p.R545R 0.61 TCGA-DC-6683-01 X 79286674 79286674 G T TBX22 3'UTR 0.80 TCGA-DC-6683-01 X 92928274 92928274 C T NAP1L3 Silent p.S10S 0.14 TCGA-DT-5265-01 10 114136095 114136095 T A ACSL5 Missense_Mutation p.W10R 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.781) TCGA-DT-5265-01 10 135352376 135352376 G A CYP2E1 Missense_Mutation p.V464I 0.33 tolerated(0.15) benign(0.024) TCGA-DT-5265-01 10 42916378 42916378 C A CCNYL2 Splice_Site 0.28 TCGA-DT-5265-01 10 50396400 50396400 G A C10orf128 5'UTR 0.25 TCGA-DT-5265-01 10 55945014 55945014 C G PCDH15 Missense_Mutation p.E440D 0.42 tolerated(0.2) benign(0.16) TCGA-DT-5265-01 10 69684937 69684937 T C HERC4 Missense_Mutation p.E957G 0.24 tolerated(0.21) benign(0.031) TCGA-DT-5265-01 11 122850031 122850031 G A BSX Missense_Mutation p.R133C 0.54 deleterious(0) probably_damaging(0.999) TCGA-DT-5265-01 11 132205063 132205063 G A NTM 3'UTR 0.43 TCGA-DT-5265-01 11 30926660 30926660 G A DCDC1 Missense_Mutation p.R1386C 0.29 tolerated(0.23) possibly_damaging(0.835) TCGA-DT-5265-01 11 3249228 3249228 C T MRGPRE Missense_Mutation p.V267I 0.40 tolerated(1) benign(0) TCGA-DT-5265-01 11 47469413 47469413 A G RAPSN Missense_Mutation p.L161P 0.24 deleterious(0) probably_damaging(0.996) TCGA-DT-5265-01 11 58384980 58384980 G C ZFP91 Missense_Mutation p.G505A 0.46 tolerated_low_confidence(0.39) benign(0.004) TCGA-DT-5265-01 11 6530297 6530297 C T DNHD1 Missense_Mutation p.R370C 0.34 probably_damaging(0.953) TCGA-DT-5265-01 11 67765861 67765861 A G UNC93B1 Missense_Mutation p.L250P 0.11 tolerated(0.15) possibly_damaging(0.861) TCGA-DT-5265-01 12 33031163 33031163 G T PKP2 Nonsense_Mutation p.Y217* 0.42 TCGA-DT-5265-01 12 49720484 49720485 - GA TROAP Frame_Shift_Ins p.T252Rfs*37 0.26 TCGA-DT-5265-01 12 51237739 51237739 G A TMPRSS12 Missense_Mutation p.R101H 0.32 tolerated(0.15) benign(0.003) TCGA-DT-5265-01 12 53775987 53775987 C T SP1 Nonsense_Mutation p.Q86* 0.36 TCGA-DT-5265-01 12 63544123 63544123 C T AVPR1A Missense_Mutation p.R165H 0.31 deleterious(0.02) benign(0.189) TCGA-DT-5265-01 12 7637927 7637927 G T CD163 Silent p.G848G 0.33 TCGA-DT-5265-01 12 91348811 91348811 C T CCER1 5'UTR 0.33 TCGA-DT-5265-01 14 23375481 23375481 T C RBM23 Silent p.R108R 0.08 TCGA-DT-5265-01 14 24529216 24529216 G A LRRC16B Missense_Mutation p.D636N 0.43 deleterious(0) probably_damaging(0.999) TCGA-DT-5265-01 14 42361064 42361064 A - LRFN5 Frame_Shift_Del p.N667Tfs*12 0.20 TCGA-DT-5265-01 14 65262199 65262199 C T SPTB Silent p.T500T 0.34 TCGA-DT-5265-01 15 27572176 27572176 G C GABRG3 Missense_Mutation p.R164T 0.08 deleterious(0) benign(0.355) TCGA-DT-5265-01 15 43724594 43724594 C A TP53BP1 Missense_Mutation p.G1158V 0.07 deleterious(0) possibly_damaging(0.907) TCGA-DT-5265-01 15 52905979 52905979 C T FAM214A Missense_Mutation p.R31Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-DT-5265-01 17 39977328 39977328 C T FKBP10 Silent p.H462H 0.56 TCGA-DT-5265-01 17 40453361 40453361 G A STAT5A Missense_Mutation p.R353H 0.48 deleterious(0) probably_damaging(1) TCGA-DT-5265-01 17 59886067 59886067 G A BRIP1 Nonsense_Mutation p.Q227* 0.58 TCGA-DT-5265-01 17 61558525 61558525 T C ACE Silent p.D307D 0.08 TCGA-DT-5265-01 17 7577079 7577079 C A TP53 Nonsense_Mutation p.E287* 0.50 TCGA-DT-5265-01 18 44057643 44057643 C T LOXHD1 Missense_Mutation p.R1094H 0.36 deleterious(0.03) benign(0.227) TCGA-DT-5265-01 18 44087528 44087528 C T LOXHD1 Missense_Mutation p.V778I 0.48 tolerated(0.76) probably_damaging(0.949) TCGA-DT-5265-01 18 44559563 44559563 G A TCEB3B Silent p.S691S 0.58 TCGA-DT-5265-01 18 76755025 76755025 C T SALL3 Nonsense_Mutation p.R1012* 0.55 TCGA-DT-5265-01 18 8247843 8247843 C G PTPRM Missense_Mutation p.S818C 0.27 tolerated(0.15) possibly_damaging(0.749) TCGA-DT-5265-01 19 14910336 14910336 C T OR7C1 Missense_Mutation p.V205I 0.25 tolerated_low_confidence(0.15) benign(0.02) TCGA-DT-5265-01 19 18378120 18378120 C T KIAA1683 Missense_Mutation p.R77H 0.23 tolerated(0.39) benign(0.098) TCGA-DT-5265-01 19 35741411 35741411 C T LSR Silent p.L149L 0.25 TCGA-DT-5265-01 19 36206338 36206338 C T ZBTB32 Silent p.P270P 0.41 TCGA-DT-5265-01 19 3767317 3767317 C T MRPL54 Missense_Mutation p.R115W 0.52 tolerated(0.3) benign(0.284) TCGA-DT-5265-01 19 40722087 40722087 G A TTC9B Missense_Mutation p.R235W 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.545) TCGA-DT-5265-01 19 51169858 51169858 C T SHANK1 Missense_Mutation p.V1787I 0.30 unknown(0) TCGA-DT-5265-01 19 53117825 53117825 C T ZNF83 5'UTR 0.20 TCGA-DT-5265-01 1 1417636 1417636 C T ATAD3B Silent p.I211I 0.35 TCGA-DT-5265-01 1 144882867 144882867 C A PDE4DIP Missense_Mutation p.S1051I 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-DT-5265-01 1 153982551 153982551 A G NUP210L Silent p.L1609L 0.09 TCGA-DT-5265-01 1 155239397 155239397 T C CLK2 Missense_Mutation p.D94G 0.09 tolerated(0.11) benign(0.173) TCGA-DT-5265-01 1 159923952 159923952 T C SLAMF9 5'UTR 0.12 TCGA-DT-5265-01 1 161163136 161163136 C T ADAMTS4 Missense_Mutation p.R593H 0.47 tolerated(0.27) benign(0.025) TCGA-DT-5265-01 1 177030287 177030287 C A ASTN1 Missense_Mutation p.G133V 0.37 tolerated_low_confidence(0.08) probably_damaging(0.969) TCGA-DT-5265-01 1 196876538 196876538 G A CFHR4 Missense_Mutation p.E236K 0.29 tolerated(0.12) probably_damaging(0.994) TCGA-DT-5265-01 1 200529955 200529955 G T KIF14 Silent p.I1375I 0.32 TCGA-DT-5265-01 1 205814641 205814641 C T PM20D1 Missense_Mutation p.V101M 0.16 deleterious(0.03) possibly_damaging(0.474) TCGA-DT-5265-01 1 220101551 220101551 C T SLC30A10 Missense_Mutation p.E78K 0.24 deleterious(0) probably_damaging(0.969) TCGA-DT-5265-01 1 22222458 22222458 G A HSPG2 Silent p.D67D 0.32 TCGA-DT-5265-01 1 232579389 232579389 G A SIPA1L2 Silent p.P1132P 0.36 TCGA-DT-5265-01 1 25558965 25558965 C T SYF2 5'UTR 0.50 TCGA-DT-5265-01 1 27690729 27690729 C T MAP3K6 Missense_Mutation p.A221T 0.44 tolerated(0.44) benign(0.026) TCGA-DT-5265-01 1 32794745 32794745 A G HDAC1 Missense_Mutation p.E238G 0.08 tolerated(0.12) benign(0.022) TCGA-DT-5265-01 1 57285004 57285004 T C C1orf168 5'UTR 0.12 TCGA-DT-5265-01 1 70505259 70505259 C A LRRC7 Missense_Mutation p.S1213Y 0.33 deleterious(0) possibly_damaging(0.73) TCGA-DT-5265-01 20 31592102 31592102 G A SUN5 Silent p.L15L 0.16 TCGA-DT-5265-01 21 32015183 32015183 G T KRTAP20-3 5'UTR 0.34 TCGA-DT-5265-01 21 32624145 32624145 C T TIAM1 Missense_Mutation p.V442I 0.35 tolerated(0.33) benign(0.26) TCGA-DT-5265-01 21 34542053 34542053 G A C21orf54 Missense_Mutation p.R39C 0.28 possibly_damaging(0.833) TCGA-DT-5265-01 22 16287737 16287737 T C POTEH Missense_Mutation p.D50G 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-DT-5265-01 22 31608411 31608411 G T LIMK2 Splice_Site p.X6_splice 0.46 TCGA-DT-5265-01 22 32589296 32589296 G A RFPL2 Intron 0.33 TCGA-DT-5265-01 22 45972882 45972882 G A FBLN1 Silent p.T622T 0.15 TCGA-DT-5265-01 2 101009849 101009849 G A CHST10 Missense_Mutation p.P310L 0.40 tolerated(0.11) benign(0.02) TCGA-DT-5265-01 2 125521571 125521571 G A CNTNAP5 Missense_Mutation p.V793I 0.35 deleterious(0) benign(0.158) TCGA-DT-5265-01 2 1677555 1677555 C T PXDN Missense_Mutation p.R293H 0.23 deleterious(0) probably_damaging(0.982) TCGA-DT-5265-01 2 182542971 182542972 - G NEUROD1 Frame_Shift_Ins p.H206Pfs*38 0.44 TCGA-DT-5265-01 2 220347992 220347992 C T SPEG Missense_Mutation p.P1936L 0.33 probably_damaging(0.999) TCGA-DT-5265-01 2 223163317 223163317 G A PAX3 Silent p.G6G 0.35 TCGA-DT-5265-01 2 228102706 228102706 G A COL4A3 Missense_Mutation p.G37D 0.34 probably_damaging(0.974) TCGA-DT-5265-01 2 66796262 66796262 G A MEIS1 3'UTR 0.34 TCGA-DT-5265-01 3 121615292 121615292 A G SLC15A2 Missense_Mutation p.I49V 0.44 deleterious(0.01) possibly_damaging(0.893) TCGA-DT-5265-01 3 142031564 142031564 G A XRN1 Missense_Mutation p.S1565L 0.39 deleterious_low_confidence(0.02) benign(0.066) TCGA-DT-5265-01 3 155643135 155643135 A G GMPS Missense_Mutation p.I514V 0.14 tolerated(0.26) possibly_damaging(0.501) TCGA-DT-5265-01 3 183884627 183884627 G T DVL3 Silent p.R354R 0.36 TCGA-DT-5265-01 3 183905969 183905969 C T ABCF3 Missense_Mutation p.R204C 0.50 deleterious(0) probably_damaging(0.998) TCGA-DT-5265-01 3 3095549 3095549 C T CNTN4 Missense_Mutation p.S957L 0.39 deleterious(0.02) benign(0.001) TCGA-DT-5265-01 3 54914866 54914866 C T CACNA2D3 Nonsense_Mutation p.R630* 0.13 TCGA-DT-5265-01 4 164507069 164507069 G A MARCH1 Silent p.C85C 0.44 TCGA-DT-5265-01 4 186598368 186598368 G A SORBS2 Intron 0.30 TCGA-DT-5265-01 4 6037771 6037771 C T JAKMIP1 Missense_Mutation p.G747S 0.32 tolerated(0.73) benign(0.002) TCGA-DT-5265-01 4 76522237 76522237 C T CDKL2 Missense_Mutation p.V402M 0.27 tolerated(0.2) benign(0.018) TCGA-DT-5265-01 4 780337 780337 G A CPLX1 Silent p.T119T 0.28 TCGA-DT-5265-01 4 83349484 83349484 T G HNRNPDL Silent p.R187R 0.27 TCGA-DT-5265-01 5 102611999 102611999 C T C5orf30 Nonsense_Mutation p.R127* 0.28 TCGA-DT-5265-01 5 14419928 14419928 C T TRIO Silent p.F1667F 0.37 TCGA-DT-5265-01 5 36035969 36035969 G A UGT3A2 Missense_Mutation p.A468V 0.32 deleterious(0.05) possibly_damaging(0.73) TCGA-DT-5265-01 5 40775046 40775046 G A PRKAA1 Missense_Mutation p.T131I 0.16 tolerated_low_confidence(0.17) benign(0.002) TCGA-DT-5265-01 5 43655960 43655960 G A NNT Missense_Mutation p.R693H 0.27 deleterious(0) probably_damaging(0.937) TCGA-DT-5265-01 6 165713889 165713889 A T C6orf118 Missense_Mutation p.S280R 0.34 deleterious(0) probably_damaging(0.992) TCGA-DT-5265-01 6 25762201 25762201 G C SLC17A4 Missense_Mutation p.G4A 0.38 tolerated(0.75) benign(0.001) TCGA-DT-5265-01 6 51924824 51924824 A G PKHD1 Missense_Mutation p.F379L 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-DT-5265-01 7 111484842 111484842 G A DOCK4 Missense_Mutation p.R905W 0.49 deleterious(0) possibly_damaging(0.723) TCGA-DT-5265-01 7 111977859 111977859 A G ZNF277 Missense_Mutation p.E315G 0.11 deleterious(0.04) benign(0.297) TCGA-DT-5265-01 7 124467279 124467279 G A POT1 Missense_Mutation p.L559F 0.47 deleterious(0) probably_damaging(0.999) TCGA-DT-5265-01 7 128633897 128633897 C T TNPO3 Silent p.L410L 0.15 TCGA-DT-5265-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-DT-5265-01 7 158718938 158718938 C T WDR60 Missense_Mutation p.T773M 0.44 deleterious(0.02) benign(0.085) TCGA-DT-5265-01 7 33945340 33945340 G A BMPER Missense_Mutation p.A39T 0.32 tolerated(0.06) benign(0.026) TCGA-DT-5265-01 7 37947203 37947203 G A SFRP4 Missense_Mutation p.R307C 0.25 deleterious(0) probably_damaging(0.948) TCGA-DT-5265-01 7 3991457 3991457 C T SDK1 Missense_Mutation p.P352L 0.29 deleterious(0.01) benign(0.41) TCGA-DT-5265-01 7 50450404 50450404 C T IKZF1 Silent p.S196S 0.20 TCGA-DT-5265-01 7 66409968 66409968 G A TMEM248 Nonsense_Mutation p.W55* 0.21 TCGA-DT-5265-01 8 121382738 121382738 C T COL14A1 Intron 0.17 TCGA-DT-5265-01 8 145689545 145689545 G A CYHR1 Intron 0.44 TCGA-DT-5265-01 9 100413599 100413599 C T NCBP1 Nonsense_Mutation p.Q335* 0.21 TCGA-DT-5265-01 9 100672273 100672273 G A C9orf156 Silent p.A345A 0.40 TCGA-DT-5265-01 9 102590654 102590654 G A NR4A3 Silent p.Q121Q 0.31 TCGA-DT-5265-01 9 117139394 117139394 C G AKNA Silent p.L231L 0.35 TCGA-DT-5265-01 9 130149570 130149570 G A GARNL3 Silent p.P829P 0.24 TCGA-DT-5265-01 9 5921603 5921604 - TACA KIAA2026 Frame_Shift_Ins p.I1465Cfs*28 0.27 TCGA-DT-5265-01 X 2945415 2945415 G A ARSH Silent p.P366P 0.86 TCGA-DT-5265-01 X 71425229 71425229 C T ERCC6L Missense_Mutation p.G1130R 0.72 tolerated(0.46) benign(0.004) TCGA-DY-A0XA-01 10 105889708 105889708 C T WDR96 3'UTR 0.29 TCGA-DY-A0XA-01 10 25887718 25887718 G A GPR158 Missense_Mutation p.A1055T 0.38 tolerated(0.39) benign(0.006) TCGA-DY-A0XA-01 10 26443698 26443698 T C MYO3A Silent p.R913R 0.38 TCGA-DY-A0XA-01 11 104871023 104871023 T A CASP5 Missense_Mutation p.K319I 0.35 deleterious(0) probably_damaging(0.998) TCGA-DY-A0XA-01 11 119183626 119183626 G T MCAM Nonsense_Mutation p.S198* 0.13 TCGA-DY-A0XA-01 11 120989281 120989281 T G TECTA Missense_Mutation p.L353V 0.38 tolerated(0.63) benign(0.005) TCGA-DY-A0XA-01 11 122817253 122817253 A G C11orf63 Missense_Mutation p.D561G 0.19 tolerated(0.12) benign(0.081) TCGA-DY-A0XA-01 11 123676949 123676949 C G OR6M1 Missense_Mutation p.A37P 0.47 deleterious(0) benign(0.158) TCGA-DY-A0XA-01 11 31349698 31349698 G A DCDC1 Missense_Mutation p.P44S 0.24 tolerated_low_confidence(0.26) benign(0.021) TCGA-DY-A0XA-01 11 47306652 47306652 T G MADD Missense_Mutation p.F773C 0.49 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-DY-A0XA-01 11 720175 720175 G C EPS8L2 Silent p.L93L 0.39 TCGA-DY-A0XA-01 11 99944920 99944920 A T CNTN5 Missense_Mutation p.I492F 0.34 tolerated(0.39) possibly_damaging(0.868) TCGA-DY-A0XA-01 12 1023673 1023673 C T RAD52 Silent p.T297T 0.07 TCGA-DY-A0XA-01 12 113405240 113405240 T C OAS3 Missense_Mutation p.S903P 0.10 tolerated(0.19) benign(0.004) TCGA-DY-A0XA-01 12 120599361 120599361 G C GCN1L1 Missense_Mutation p.A790G 0.33 benign(0.003) TCGA-DY-A0XA-01 12 122687940 122687940 T C LRRC43 Missense_Mutation p.L641P 0.15 deleterious(0) probably_damaging(0.996) TCGA-DY-A0XA-01 12 23793752 23793752 T A SOX5 Missense_Mutation p.Q337H 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-DY-A0XA-01 12 3310386 3310386 G C TSPAN9 Missense_Mutation p.L9F 0.31 deleterious(0.05) benign(0.034) TCGA-DY-A0XA-01 12 3310413 3310413 G C TSPAN9 Missense_Mutation p.L18F 0.36 tolerated(0.06) benign(0.169) TCGA-DY-A0XA-01 12 38714221 38714221 A C ALG10B Missense_Mutation p.K210Q 0.40 tolerated(0.13) possibly_damaging(0.836) TCGA-DY-A0XA-01 12 55688511 55688511 G C OR6C6 Missense_Mutation p.S169C 0.34 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DY-A0XA-01 12 55725539 55725539 G T OR6C3 Missense_Mutation p.D19Y 0.22 deleterious_low_confidence(0.01) benign(0.089) TCGA-DY-A0XA-01 12 98941664 98941664 G C TMPO 3'UTR 0.14 TCGA-DY-A0XA-01 13 115008808 115008808 G A CDC16 Silent p.E206E 0.20 TCGA-DY-A0XA-01 13 23932592 23932592 C T SACS Silent p.A162A 0.61 TCGA-DY-A0XA-01 13 28127354 28127354 C G LNX2 Missense_Mutation p.G590A 0.11 tolerated(0.06) possibly_damaging(0.883) TCGA-DY-A0XA-01 13 98009771 98009771 G T MBNL2 Missense_Mutation p.K280N 0.60 deleterious(0.04) probably_damaging(1) TCGA-DY-A0XA-01 14 24532658 24532658 C T LRRC16B Silent p.P965P 0.09 TCGA-DY-A0XA-01 14 51288636 51288636 G A NIN Missense_Mutation p.P47S 0.15 deleterious(0) probably_damaging(0.998) TCGA-DY-A0XA-01 14 77872352 77872352 T A NOXRED1 Missense_Mutation p.H270L 0.33 tolerated(0.07) benign(0.332) TCGA-DY-A0XA-01 14 86091194 86091194 T A FLRT2 3'UTR 0.41 TCGA-DY-A0XA-01 14 94912753 94912753 G C SERPINA11 Missense_Mutation p.L278V 0.35 deleterious(0) probably_damaging(0.999) TCGA-DY-A0XA-01 15 100332728 100332728 G A AC090825.1 3'Flank 0.32 TCGA-DY-A0XA-01 15 52611395 52611395 A T MYO5A Missense_Mutation p.V1674D 0.09 deleterious(0.01) benign(0.239) TCGA-DY-A0XA-01 15 65412078 65412078 C G PDCD7 Missense_Mutation p.E408D 0.18 tolerated(0.61) benign(0.079) TCGA-DY-A0XA-01 15 65962403 65962403 T C DENND4A Missense_Mutation p.I1529V 0.08 tolerated(0.72) benign(0) TCGA-DY-A0XA-01 15 86813248 86813248 A T AGBL1 Missense_Mutation p.Y600F 0.51 deleterious(0.01) probably_damaging(0.998) TCGA-DY-A0XA-01 15 99679553 99679553 C A TTC23 Missense_Mutation p.A399S 0.68 deleterious(0.02) probably_damaging(0.992) TCGA-DY-A0XA-01 16 1822399 1822399 G A MRPS34 Silent p.S160S 0.43 TCGA-DY-A0XA-01 16 21136639 21136639 G A DNAH3 Missense_Mutation p.H421Y 0.41 tolerated(1) benign(0) TCGA-DY-A0XA-01 16 2121553 2121553 C T TSC2 Missense_Mutation p.R628C 0.11 deleterious(0) probably_damaging(0.998) TCGA-DY-A0XA-01 16 4455502 4455502 G A CORO7 Missense_Mutation p.T185M 0.47 deleterious(0) probably_damaging(0.984) TCGA-DY-A0XA-01 16 4751458 4751458 C T ANKS3 Missense_Mutation p.E366K 0.12 deleterious(0.04) probably_damaging(0.997) TCGA-DY-A0XA-01 16 48234337 48234337 C A ABCC11 Silent p.L644L 0.44 TCGA-DY-A0XA-01 16 57787863 57787863 C T KATNB1 Missense_Mutation p.T395M 0.50 deleterious(0) probably_damaging(0.999) TCGA-DY-A0XA-01 16 70954646 70954646 G A HYDIN Missense_Mutation p.R2545W 0.41 benign(0) TCGA-DY-A0XA-01 16 72184567 72184567 G C PMFBP1 Missense_Mutation p.I192M 0.42 tolerated(0.07) probably_damaging(0.945) TCGA-DY-A0XA-01 17 10538195 10538195 C A MYH3 Missense_Mutation p.A1440S 0.09 deleterious(0.02) probably_damaging(0.992) TCGA-DY-A0XA-01 17 48155479 48155479 C T ITGA3 Nonsense_Mutation p.Q737* 0.38 TCGA-DY-A0XA-01 17 60503802 60503802 G A METTL2A Nonsense_Mutation p.W115* 0.40 TCGA-DY-A0XA-01 17 7385663 7385663 T A SLC35G6 Missense_Mutation p.S120R 0.55 deleterious(0) possibly_damaging(0.609) TCGA-DY-A0XA-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.58 TCGA-DY-A0XA-01 17 79967066 79967066 C T ASPSCR1 Missense_Mutation p.R363W 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-DY-A0XA-01 18 19153967 19153967 G T ESCO1 Missense_Mutation p.P280T 0.39 tolerated(0.53) benign(0.118) TCGA-DY-A0XA-01 18 44085903 44085903 T G LOXHD1 Missense_Mutation p.N815H 0.66 tolerated(0.08) probably_damaging(0.999) TCGA-DY-A0XA-01 18 77659494 77659494 A C KCNG2 Missense_Mutation p.Y360S 0.77 deleterious(0) probably_damaging(1) TCGA-DY-A0XA-01 19 13136365 13136365 G A NFIX Silent p.P186P 0.12 TCGA-DY-A0XA-01 19 2099265 2099265 C T IZUMO4 Missense_Mutation p.P207L 0.49 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DY-A0XA-01 19 2116629 2116629 T C AP3D1 Missense_Mutation p.E659G 0.09 deleterious(0.01) benign(0.072) TCGA-DY-A0XA-01 19 30935438 30935438 C T ZNF536 Silent p.H323H 0.32 TCGA-DY-A0XA-01 19 39198787 39198787 G C ACTN4 Silent p.L201L 0.43 TCGA-DY-A0XA-01 19 40487220 40487220 C G PSMC4 3'UTR 0.26 TCGA-DY-A0XA-01 19 42482921 42482921 G A ATP1A3 Silent p.N502N 0.34 TCGA-DY-A0XA-01 19 44890675 44890675 G C ZNF285 Missense_Mutation p.L578V 0.15 tolerated(0.11) benign(0.145) TCGA-DY-A0XA-01 19 6669933 6669933 C T TNFSF14 Missense_Mutation p.G50R 0.32 deleterious(0) probably_damaging(0.95) TCGA-DY-A0XA-01 19 6734042 6734042 G T GPR108 Missense_Mutation p.P175T 0.42 tolerated(0.46) benign(0.001) TCGA-DY-A0XA-01 1 110884866 110884866 T A RBM15 Missense_Mutation p.Y947N 0.22 deleterious(0) possibly_damaging(0.69) TCGA-DY-A0XA-01 1 118570982 118570982 C G SPAG17 Missense_Mutation p.E1215D 0.24 tolerated(0.1) benign(0.137) TCGA-DY-A0XA-01 1 147380806 147380806 C A GJA8 Missense_Mutation p.Q242K 0.49 tolerated(0.36) benign(0.007) TCGA-DY-A0XA-01 1 149287996 149287996 G C RP11-403I13.8 RNA 0.33 TCGA-DY-A0XA-01 1 150529180 150529180 G A ADAMTSL4 Missense_Mutation p.V554I 0.41 tolerated(0.13) benign(0.26) TCGA-DY-A0XA-01 1 150921997 150921997 T C SETDB1 Missense_Mutation p.Y526H 0.35 tolerated(0.58) benign(0) TCGA-DY-A0XA-01 1 151316903 151316903 C T RFX5 Missense_Mutation p.G155S 0.31 deleterious(0) probably_damaging(1) TCGA-DY-A0XA-01 1 152192382 152192382 C G HRNR Missense_Mutation p.E575Q 0.39 unknown(0) TCGA-DY-A0XA-01 1 154570424 154570424 G C ADAR Nonsense_Mutation p.S605* 0.45 TCGA-DY-A0XA-01 1 155891282 155891282 C T KIAA0907 Missense_Mutation p.V384M 0.43 tolerated(0.18) possibly_damaging(0.802) TCGA-DY-A0XA-01 1 156890545 156890545 T A LRRC71 5'UTR 0.30 TCGA-DY-A0XA-01 1 158259817 158259817 A T CD1C 5'UTR 0.47 TCGA-DY-A0XA-01 1 166890006 166890006 G C ILDR2 Missense_Mutation p.R608G 0.50 tolerated(0.1) probably_damaging(0.998) TCGA-DY-A0XA-01 1 178490154 178490154 C T TEX35 Intron 0.48 TCGA-DY-A0XA-01 1 178514795 178514795 C T C1ORF220 Nonsense_Mutation p.R61* 0.40 TCGA-DY-A0XA-01 1 193051701 193051701 G A TROVE2 Missense_Mutation p.G443S 0.25 tolerated(0.11) probably_damaging(0.993) TCGA-DY-A0XA-01 1 19449478 19449478 T C UBR4 Missense_Mutation p.E3222G 0.09 benign(0.21) TCGA-DY-A0XA-01 1 196448323 196448323 A T KCNT2 Missense_Mutation p.Y124N 0.37 deleterious(0.02) probably_damaging(0.99) TCGA-DY-A0XA-01 1 198509734 198509734 T C ATP6V1G3 Missense_Mutation p.K16R 0.17 deleterious(0.02) possibly_damaging(0.636) TCGA-DY-A0XA-01 1 223179007 223179007 G A DISP1 Missense_Mutation p.S1423N 0.34 tolerated_low_confidence(0.55) benign(0) TCGA-DY-A0XA-01 1 223179008 223179008 C G DISP1 Missense_Mutation p.S1423R 0.33 tolerated_low_confidence(0.62) benign(0.001) TCGA-DY-A0XA-01 20 39317815 39317815 C G MAFB 5'UTR 0.09 TCGA-DY-A0XA-01 20 41100965 41100965 A T PTPRT Missense_Mutation p.L464Q 0.52 deleterious(0) probably_damaging(0.994) TCGA-DY-A0XA-01 20 49225051 49225051 C T FAM65C Silent p.L273L 0.62 TCGA-DY-A0XA-01 20 62187859 62187859 C A C20orf195 Missense_Mutation p.F281L 0.08 deleterious(0) probably_damaging(0.99) TCGA-DY-A0XA-01 22 28395102 28395102 G A TTC28 Silent p.S1515S 0.36 TCGA-DY-A0XA-01 22 40054286 40054286 G A CACNA1I Missense_Mutation p.D708N 0.31 deleterious(0) possibly_damaging(0.831) TCGA-DY-A0XA-01 22 45719078 45719078 C T FAM118A Missense_Mutation p.R24W 0.43 deleterious(0.01) possibly_damaging(0.816) TCGA-DY-A0XA-01 22 46772969 46772969 T A CELSR1 Missense_Mutation p.T2525S 0.54 deleterious(0.04) probably_damaging(0.998) TCGA-DY-A0XA-01 22 50656444 50656444 C A TUBGCP6 Silent p.G1757G 0.39 TCGA-DY-A0XA-01 22 50714223 50714223 C G AL022328.1 Missense_Mutation p.Q41E 0.44 deleterious_low_confidence(0) unknown(0) TCGA-DY-A0XA-01 2 101883145 101883145 G A CNOT11 Missense_Mutation p.G348S 0.34 tolerated(0.85) benign(0.066) TCGA-DY-A0XA-01 2 179641476 179641476 G C TTN Missense_Mutation p.F1705L 0.19 TCGA-DY-A0XA-01 2 201281142 201281142 A T SPATS2L Silent p.G63G 0.38 TCGA-DY-A0XA-01 2 206870163 206870163 A T INO80D Silent p.I671I 0.37 TCGA-DY-A0XA-01 2 220072092 220072092 C T ZFAND2B Silent p.C33C 0.08 TCGA-DY-A0XA-01 2 220421205 220421205 G A OBSL1 Missense_Mutation p.T1436M 0.44 tolerated(0.13) benign(0.104) TCGA-DY-A0XA-01 2 242757596 242757596 C T NEU4 Missense_Mutation p.A239V 0.22 tolerated(0.6) possibly_damaging(0.555) TCGA-DY-A0XA-01 2 96690546 96690546 G A GPAT2 Missense_Mutation p.T468M 0.40 deleterious(0.02) possibly_damaging(0.897) TCGA-DY-A0XA-01 3 121409535 121409535 T C GOLGB1 Silent p.Q2892Q 0.33 TCGA-DY-A0XA-01 3 12208741 12208741 T A SYN2 RNA 0.11 TCGA-DY-A0XA-01 3 133098637 133098637 G C TMEM108 Missense_Mutation p.A28P 0.20 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-DY-A0XA-01 3 15115811 15115811 T A ZFYVE20 Missense_Mutation p.L611F 0.21 tolerated_low_confidence(0.76) benign(0.002) TCGA-DY-A0XA-01 3 151599123 151599123 G T SUCNR1 Missense_Mutation p.K264N 0.34 tolerated(0.61) benign(0.013) TCGA-DY-A0XA-01 3 160786907 160786907 G T PPM1L Missense_Mutation p.V349L 0.32 deleterious(0.03) benign(0.348) TCGA-DY-A0XA-01 3 178916957 178916957 G C PIK3CA Missense_Mutation p.R115P 0.42 tolerated(0.19) benign(0.413) TCGA-DY-A0XA-01 3 182755018 182755018 G A MCCC1 Missense_Mutation p.L528F 0.37 tolerated(0.07) benign(0.14) TCGA-DY-A0XA-01 3 184428939 184428939 A C MAGEF1 Missense_Mutation p.L224R 0.39 deleterious(0) probably_damaging(0.998) TCGA-DY-A0XA-01 3 195997391 195997391 C T PCYT1A Silent p.Q4Q 0.07 TCGA-DY-A0XA-01 3 44879835 44879835 A T KIF15 Missense_Mutation p.K1080N 0.33 tolerated(0.22) benign(0.046) TCGA-DY-A0XA-01 3 57902864 57902864 G A SLMAP Intron 0.35 TCGA-DY-A0XA-01 3 8590294 8590294 C G LMCD1 Missense_Mutation p.P143R 0.36 deleterious(0) probably_damaging(1) TCGA-DY-A0XA-01 3 96706206 96706206 T C EPHA6 Silent p.N161N 0.20 TCGA-DY-A0XA-01 4 122749262 122749262 A G BBS7 Intron 0.09 TCGA-DY-A0XA-01 4 158257749 158257749 G T GRIA2 Missense_Mutation p.S565I 0.44 deleterious(0) probably_damaging(0.999) TCGA-DY-A0XA-01 4 177049909 177049909 C T WDR17 Missense_Mutation p.R295C 0.32 deleterious(0) probably_damaging(0.998) TCGA-DY-A0XA-01 4 79238639 79238639 A G FRAS1 Missense_Mutation p.Y646C 0.24 benign(0.043) TCGA-DY-A0XA-01 4 94750181 94750181 C A ATOH1 Missense_Mutation p.P35Q 0.47 tolerated_low_confidence(0.3) probably_damaging(0.997) TCGA-DY-A0XA-01 4 981869 981869 T C SLC26A1 3'UTR 0.33 TCGA-DY-A0XA-01 5 112173801 112173801 C A APC Nonsense_Mutation p.S837* 0.47 TCGA-DY-A0XA-01 5 112175213 112175213 A T APC Nonsense_Mutation p.K1308* 0.31 TCGA-DY-A0XA-01 5 112770459 112770459 T C TSSK1B Silent p.V26V 0.20 TCGA-DY-A0XA-01 5 140047905 140047905 C G WDR55 Missense_Mutation p.S93C 0.29 deleterious(0) probably_damaging(0.997) TCGA-DY-A0XA-01 5 140475673 140475673 G A PCDHB2 Silent p.L433L 0.32 TCGA-DY-A0XA-01 5 158696934 158696934 A G UBLCP1 Missense_Mutation p.D58G 0.27 tolerated(0.15) benign(0.007) TCGA-DY-A0XA-01 5 161580118 161580118 G A GABRG2 Missense_Mutation p.R431H 0.41 tolerated(0.2) possibly_damaging(0.9) TCGA-DY-A0XA-01 5 178413622 178413622 C T GRM6 Missense_Mutation p.G545R 0.32 tolerated(0.08) probably_damaging(0.986) TCGA-DY-A0XA-01 5 68809925 68809925 G A OCLN Missense_Mutation p.V294I 0.16 tolerated(0.05) possibly_damaging(0.729) TCGA-DY-A0XA-01 6 117715502 117715502 A G ROS1 Silent p.S329S 0.12 TCGA-DY-A0XA-01 6 169640603 169640603 A C THBS2 Missense_Mutation p.F326V 0.39 tolerated(0.73) benign(0.002) TCGA-DY-A0XA-01 6 26509025 26509025 G T BTN1A1 Missense_Mutation p.G402W 0.37 deleterious(0.01) probably_damaging(0.997) TCGA-DY-A0XA-01 6 28327608 28327608 A C ZKSCAN3 Missense_Mutation p.K82T 0.11 deleterious(0) probably_damaging(0.996) TCGA-DY-A0XA-01 6 31655417 31655417 A T ABHD16A Splice_Site p.X516_splice 0.29 TCGA-DY-A0XA-01 6 45390184 45390184 A C RUNX2 Intron 0.17 TCGA-DY-A0XA-01 6 51523858 51523858 A T PKHD1 Nonsense_Mutation p.L3689* 0.20 TCGA-DY-A0XA-01 6 87725685 87725685 C G HTR1E Missense_Mutation p.S211R 0.56 tolerated(0.11) benign(0.005) TCGA-DY-A0XA-01 7 104703832 104703832 C T KMT2E Missense_Mutation p.P74L 0.20 deleterious(0.01) possibly_damaging(0.713) TCGA-DY-A0XA-01 7 112424370 112424370 T C TMEM168 Missense_Mutation p.T171A 0.36 tolerated(0.56) benign(0.001) TCGA-DY-A0XA-01 7 137172404 137172404 T C DGKI Silent p.G778G 0.09 TCGA-DY-A0XA-01 7 14652999 14652999 C G DGKB Missense_Mutation p.V443L 0.14 deleterious(0.04) benign(0.158) TCGA-DY-A0XA-01 7 150761618 150761618 C T SLC4A2 Missense_Mutation p.R75C 0.50 deleterious_low_confidence(0) benign(0.249) TCGA-DY-A0XA-01 7 75615793 75615793 G C POR Missense_Mutation p.W679C 0.22 deleterious(0) probably_damaging(0.999) TCGA-DY-A0XA-01 8 120865287 120865287 C T DSCC1 Silent p.E117E 0.30 TCGA-DY-A0XA-01 8 144461593 144461593 G A RHPN1 Missense_Mutation p.C287Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-DY-A0XA-01 8 17867209 17867209 A G PCM1 Missense_Mutation p.R1706G 0.09 deleterious(0) possibly_damaging(0.63) TCGA-DY-A0XA-01 8 23538889 23538889 G T NKX3-1 Missense_Mutation p.L184I 0.35 tolerated(0.1) probably_damaging(0.987) TCGA-DY-A0XA-01 8 88885187 88885187 G A DCAF4L2 Missense_Mutation p.T338M 0.45 deleterious(0.01) probably_damaging(0.953) TCGA-DY-A0XA-01 8 95746967 95746967 G T DPY19L4 Missense_Mutation p.W79C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DY-A0XA-01 9 101340282 101340282 C A GABBR2 Nonsense_Mutation p.G132* 0.36 TCGA-DY-A0XA-01 9 123222897 123222897 C T CDK5RAP2 Missense_Mutation p.D719N 0.34 tolerated(0.19) possibly_damaging(0.811) TCGA-DY-A0XA-01 9 133730245 133730245 C T ABL1 Missense_Mutation p.T123I 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-DY-A0XA-01 9 18474257 18474257 T A ADAMTSL1 Silent p.P9P 0.44 TCGA-DY-A0XA-01 9 2717644 2717644 G A KCNV2 5'UTR 0.44 TCGA-DY-A0XA-01 9 34371167 34371167 G T KIAA1161 Missense_Mutation p.P558Q 0.31 deleterious(0.01) probably_damaging(1) TCGA-DY-A0XA-01 9 70177932 70177932 G T FOXD4L5 Silent p.R18R 0.17 TCGA-DY-A0XA-01 9 91610485 91610485 A T C9orf47 3'UTR 0.43 TCGA-DY-A0XA-01 9 990868 990868 C T DMRT3 Missense_Mutation p.R428C 0.35 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DY-A0XA-01 X 122747326 122747326 T A THOC2 Missense_Mutation p.K1534I 0.28 deleterious_low_confidence(0.02) benign(0.086) TCGA-DY-A0XA-01 X 128724250 128724250 C T OCRL 3'UTR 0.27 TCGA-DY-A0XA-01 X 12940021 12940021 G C TLR8 Missense_Mutation p.W954C 0.16 tolerated(0.09) probably_damaging(0.986) TCGA-DY-A0XA-01 X 148068985 148068985 C T AFF2 Missense_Mutation p.R1238C 0.16 deleterious(0) probably_damaging(0.997) TCGA-DY-A0XA-01 X 153228831 153228831 G A HCFC1 Missense_Mutation p.A186V 0.22 tolerated(0.07) probably_damaging(0.994) TCGA-DY-A0XA-01 X 153247627 153247627 G A TMEM187 Silent p.E38E 0.35 TCGA-DY-A0XA-01 X 153695461 153695461 C T PLXNA3 Missense_Mutation p.R1057C 0.33 deleterious(0.01) probably_damaging(0.991) TCGA-DY-A0XA-01 X 153760133 153760133 T A G6PD 3'UTR 0.36 TCGA-DY-A0XA-01 X 34150192 34150192 A T FAM47A Silent p.T68T 0.05 TCGA-DY-A0XA-01 X 50037950 50037950 C A CCNB3 Missense_Mutation p.H98N 0.50 tolerated(0.31) benign(0.008) TCGA-DY-A0XA-01 X 54841194 54841194 A G MAGED2 Missense_Mutation p.K458E 0.30 deleterious(0.02) possibly_damaging(0.709) TCGA-DY-A0XA-01 X 65427042 65427042 G T HEPH Missense_Mutation p.G820V 0.50 deleterious(0) benign(0.314) TCGA-DY-A0XA-01 X 70595105 70595105 G A TAF1 Silent p.K167K 0.14 TCGA-DY-A0XA-01 X 73811142 73811142 C G RLIM 3'UTR 0.38 TCGA-DY-A0XA-01 X 79698872 79698872 G T FAM46D Missense_Mutation p.K278N 0.51 tolerated(0.11) possibly_damaging(0.677) TCGA-DY-A1DC-01 10 100242479 100242479 C A HPSE2 Missense_Mutation p.K509N 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-DY-A1DC-01 10 103534937 103534937 G T FGF8 Missense_Mutation p.L36I 0.37 tolerated_low_confidence(0.18) benign(0.015) TCGA-DY-A1DC-01 10 112653929 112653929 T G PDCD4 Silent p.P357P 0.16 TCGA-DY-A1DC-01 10 118220538 118220538 C A PNLIPRP3 Nonsense_Mutation p.S209* 0.33 TCGA-DY-A1DC-01 10 128193073 128193073 G T C10orf90 Silent p.T232T 0.39 TCGA-DY-A1DC-01 10 45498857 45498857 C G ZNF22 Nonsense_Mutation p.S14* 0.13 TCGA-DY-A1DC-01 10 46148454 46148454 C A ZFAND4 Missense_Mutation p.D80Y 0.35 deleterious(0) probably_damaging(0.988) TCGA-DY-A1DC-01 11 113269881 113269881 C A ANKK1 Missense_Mutation p.T397K 0.39 deleterious(0) probably_damaging(0.953) TCGA-DY-A1DC-01 11 113704982 113704982 G C USP28 Missense_Mutation p.R204G 0.32 deleterious(0.01) benign(0.169) TCGA-DY-A1DC-01 11 122931831 122931831 A T HSPA8 Missense_Mutation p.F68I 0.43 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-DY-A1DC-01 11 58345490 58345490 A T LPXN Splice_Site p.X10_splice 0.37 TCGA-DY-A1DC-01 11 63438860 63438860 G T ATL3 5'UTR 0.26 TCGA-DY-A1DC-01 11 6622505 6622505 C T RRP8 Missense_Mutation p.S264N 0.53 tolerated(0.06) benign(0.031) TCGA-DY-A1DC-01 11 67191083 67191083 C T CARNS1 Missense_Mutation p.R622C 0.15 tolerated(0.15) benign(0.008) TCGA-DY-A1DC-01 12 103288665 103288665 G C PAH Missense_Mutation p.S67C 0.27 deleterious(0) probably_damaging(1) TCGA-DY-A1DC-01 12 112926888 112926888 G T PTPN11 Missense_Mutation p.G503V 0.34 deleterious(0) probably_damaging(1) TCGA-DY-A1DC-01 12 406230 406230 G T KDM5A Missense_Mutation p.S1404Y 0.33 tolerated(0.52) benign(0.154) TCGA-DY-A1DC-01 12 40692172 40692172 T G LRRK2 Missense_Mutation p.V1075G 0.36 tolerated(0.22) benign(0.002) TCGA-DY-A1DC-01 12 48457593 48457593 C T SENP1 Missense_Mutation p.R436H 0.34 tolerated(0.12) possibly_damaging(0.877) TCGA-DY-A1DC-01 12 4922741 4922741 T C KCNA6 3'UTR 0.36 TCGA-DY-A1DC-01 12 57970146 57970146 T C KIF5A Missense_Mutation p.I728T 0.31 deleterious(0) probably_damaging(0.995) TCGA-DY-A1DC-01 12 6219731 6219731 G A VWF Missense_Mutation p.A114V 0.37 deleterious(0.03) probably_damaging(0.985) TCGA-DY-A1DC-01 12 71029607 71029607 C T PTPRB Missense_Mutation p.E99K 0.16 tolerated_low_confidence(0.13) benign(0.108) TCGA-DY-A1DC-01 13 36700001 36700001 T G DCLK1 Missense_Mutation p.T92P 0.39 deleterious(0) unknown(0) TCGA-DY-A1DC-01 13 39425853 39425853 T C FREM2 Missense_Mutation p.F2258S 0.40 deleterious(0) probably_damaging(0.925) TCGA-DY-A1DC-01 13 39613309 39613309 A G NHLRC3 Missense_Mutation p.T41A 0.17 tolerated_low_confidence(0.73) benign(0.001) TCGA-DY-A1DC-01 13 43681497 43681497 G A DNAJC15 3'UTR 0.05 TCGA-DY-A1DC-01 14 105408336 105408336 G A AHNAK2 Silent p.V4484V 0.58 TCGA-DY-A1DC-01 14 20389325 20389325 T G OR4K5 Missense_Mutation p.L187R 0.12 deleterious(0) probably_damaging(1) TCGA-DY-A1DC-01 14 20897326 20897326 C A KLHL33 Missense_Mutation p.E428D 0.09 tolerated(0.31) benign(0.006) TCGA-DY-A1DC-01 14 21109839 21109839 A T OR6S1 Missense_Mutation p.D4E 0.26 tolerated(0.52) benign(0.016) TCGA-DY-A1DC-01 14 64194154 64194154 A G SGPP1 Missense_Mutation p.V170A 0.08 deleterious(0.03) benign(0.247) TCGA-DY-A1DC-01 14 72200383 72200383 G C SIPA1L1 Missense_Mutation p.G1642A 0.34 tolerated(0.13) possibly_damaging(0.506) TCGA-DY-A1DC-01 14 90734705 90734705 C T PSMC1 Missense_Mutation p.H277Y 0.38 tolerated(0.25) benign(0.008) TCGA-DY-A1DC-01 14 92465662 92465662 C G TRIP11 Missense_Mutation p.R1605T 0.37 deleterious(0.02) possibly_damaging(0.543) TCGA-DY-A1DC-01 15 100801832 100801832 A G ADAMTS17 Missense_Mutation p.S295P 0.09 tolerated(0.14) possibly_damaging(0.899) TCGA-DY-A1DC-01 15 42438057 42438057 C T PLA2G4F Missense_Mutation p.G527R 0.69 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DC-01 15 67473777 67473777 C G SMAD3 Missense_Mutation p.T286R 0.64 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DC-01 15 68583063 68583063 A C FEM1B Missense_Mutation p.K456T 0.66 deleterious(0.02) possibly_damaging(0.558) TCGA-DY-A1DC-01 15 73617474 73617474 G T HCN4 Missense_Mutation p.D600E 0.68 deleterious(0.05) unknown(0) TCGA-DY-A1DC-01 15 74882238 74882238 A G ARID3B Missense_Mutation p.K259E 0.08 deleterious(0) possibly_damaging(0.594) TCGA-DY-A1DC-01 15 89381985 89381985 C T ACAN Silent p.I54I 0.40 TCGA-DY-A1DC-01 16 1636257 1636257 G A IFT140 Silent p.T343T 0.34 TCGA-DY-A1DC-01 16 20975977 20975977 G A DNAH3 Missense_Mutation p.R3077C 0.39 deleterious(0) probably_damaging(1) TCGA-DY-A1DC-01 16 31477995 31477995 G A ARMC5 Missense_Mutation p.G865S 0.40 tolerated_low_confidence(0.57) benign(0.015) TCGA-DY-A1DC-01 16 3293008 3293008 C T MEFV 3'UTR 0.42 TCGA-DY-A1DC-01 16 50810186 50810186 C T CYLD Missense_Mutation p.T340I 0.09 tolerated(0.13) benign(0.002) TCGA-DY-A1DC-01 16 67963744 67963744 T C CTRL 3'UTR 0.12 TCGA-DY-A1DC-01 16 70867911 70867911 C T HYDIN Missense_Mutation p.G4520S 0.37 probably_damaging(0.972) TCGA-DY-A1DC-01 16 71961552 71961552 C T IST1 Missense_Mutation p.P326S 0.08 tolerated(0.11) benign(0.002) TCGA-DY-A1DC-01 16 84213260 84213260 T C TAF1C Missense_Mutation p.T633A 0.08 tolerated(0.06) benign(0.046) TCGA-DY-A1DC-01 16 89702769 89702770 - C DPEP1 Frame_Shift_Ins p.E114Gfs*34 0.26 TCGA-DY-A1DC-01 17 10219217 10219218 - G MYH13 Frame_Shift_Ins p.G1289Wfs*32 0.40 TCGA-DY-A1DC-01 17 38633853 38633853 G T TNS4 Missense_Mutation p.A712E 0.26 tolerated(0.21) benign(0.428) TCGA-DY-A1DC-01 17 5085266 5085266 C A ZNF594 Missense_Mutation p.W762C 0.65 deleterious(0.02) benign(0.043) TCGA-DY-A1DC-01 17 56676529 56676529 A T TEX14 Missense_Mutation p.L732H 0.11 tolerated(0.33) benign(0.011) TCGA-DY-A1DC-01 17 67133464 67133464 T C ABCA6 Missense_Mutation p.K92E 0.40 deleterious(0) possibly_damaging(0.85) TCGA-DY-A1DC-01 17 7133384 7133384 T C DVL2 Silent p.R167R 0.10 TCGA-DY-A1DC-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.57 tolerated(0.11) benign(0.308) TCGA-DY-A1DC-01 17 78831743 78831743 C T RPTOR Intron 0.50 TCGA-DY-A1DC-01 17 7984517 7984517 C A AC129492.6 3'UTR 0.27 TCGA-DY-A1DC-01 17 80039654 80039654 C T FASN Missense_Mutation p.D2077N 0.31 tolerated(0.2) benign(0.003) TCGA-DY-A1DC-01 17 80579568 80579568 C A WDR45B Missense_Mutation p.V179L 0.07 tolerated(0.74) benign(0.007) TCGA-DY-A1DC-01 18 45395664 45395664 T G SMAD2 Missense_Mutation p.K157T 0.51 tolerated(0.14) benign(0.192) TCGA-DY-A1DC-01 18 6983192 6983192 C A LAMA1 Missense_Mutation p.S1901I 0.61 tolerated(0.1) benign(0.058) TCGA-DY-A1DC-01 18 7013845 7013845 C G LAMA1 Missense_Mutation p.C1111S 0.46 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DC-01 18 74700264 74700264 A G RP11-862L9.3 3'Flank 0.10 TCGA-DY-A1DC-01 19 12918232 12918232 G A RNASEH2A Splice_Site p.X108_splice 0.34 TCGA-DY-A1DC-01 19 14938830 14938830 G C OR7A5 Missense_Mutation p.S75C 0.37 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-DY-A1DC-01 19 15234379 15234379 C G ILVBL Missense_Mutation p.K48N 0.30 tolerated(0.19) benign(0.09) TCGA-DY-A1DC-01 19 40886845 40886845 C T HIPK4 Silent p.Q351Q 0.34 TCGA-DY-A1DC-01 19 49378015 49378015 G A PPP1R15A Missense_Mutation p.V509M 0.28 deleterious(0) probably_damaging(0.969) TCGA-DY-A1DC-01 19 49416447 49416447 C T NUCB1 Silent p.N220N 0.20 TCGA-DY-A1DC-01 19 5131093 5131093 G A KDM4B Missense_Mutation p.G441E 0.40 benign(0.24) TCGA-DY-A1DC-01 19 51983772 51983772 A G CEACAM18 Missense_Mutation p.S141G 0.41 tolerated(0.08) benign(0.056) TCGA-DY-A1DC-01 19 52941770 52941770 C A ZNF534 Missense_Mutation p.P366T 0.21 deleterious(0) unknown(0) TCGA-DY-A1DC-01 19 58564801 58564801 C A ZSCAN1 Silent p.S203S 0.36 TCGA-DY-A1DC-01 19 7623912 7623912 C T PNPLA6 Missense_Mutation p.R1202C 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-DY-A1DC-01 19 8455277 8455277 G A RAB11B 5'UTR 0.54 TCGA-DY-A1DC-01 19 8922020 8922020 C T ZNF558 Silent p.G382G 0.33 TCGA-DY-A1DC-01 1 101198073 101198073 C T VCAM1 Missense_Mutation p.P542L 0.35 deleterious(0.03) probably_damaging(0.981) TCGA-DY-A1DC-01 1 102270066 102270066 A G OLFM3 Missense_Mutation p.Y369H 0.37 tolerated(0.11) probably_damaging(0.999) TCGA-DY-A1DC-01 1 103540200 103540200 T A COL11A1 Missense_Mutation p.R209W 0.32 probably_damaging(1) TCGA-DY-A1DC-01 1 112524657 112524657 G A KCND3 Missense_Mutation p.T231M 0.50 deleterious(0) possibly_damaging(0.603) TCGA-DY-A1DC-01 1 152085111 152085111 C G TCHH Missense_Mutation p.Q194H 0.35 unknown(0) TCGA-DY-A1DC-01 1 153910230 153910230 G C DENND4B Missense_Mutation p.P692R 0.34 deleterious(0.01) benign(0.1) TCGA-DY-A1DC-01 1 156669823 156669823 C G CRABP2 Missense_Mutation p.E138Q 0.11 tolerated(0.09) benign(0.019) TCGA-DY-A1DC-01 1 16725199 16725199 G T SPATA21 3'UTR 0.46 TCGA-DY-A1DC-01 1 171553622 171553622 C T PRRC2C Missense_Mutation p.T2567I 0.15 possibly_damaging(0.889) TCGA-DY-A1DC-01 1 17263152 17263152 G T CROCC Missense_Mutation p.G326V 0.14 possibly_damaging(0.494) TCGA-DY-A1DC-01 1 173155919 173155919 G T TNFSF4 Missense_Mutation p.N96K 0.32 tolerated(0.69) benign(0.016) TCGA-DY-A1DC-01 1 176564652 176564652 G A PAPPA2 Missense_Mutation p.D638N 0.39 tolerated(0.34) benign(0.435) TCGA-DY-A1DC-01 1 196683016 196683016 A G CFH Silent p.K496K 0.12 TCGA-DY-A1DC-01 1 243480188 243480188 A T SDCCAG8 Missense_Mutation p.K354I 0.06 deleterious(0) probably_damaging(0.962) TCGA-DY-A1DC-01 1 243480190 243480190 A T SDCCAG8 Missense_Mutation p.T355S 0.05 deleterious(0.01) probably_damaging(0.984) TCGA-DY-A1DC-01 1 247695310 247695310 C T OR2C3 Silent p.P168P 0.30 TCGA-DY-A1DC-01 1 248637556 248637556 T A OR2T3 Missense_Mutation p.V302D 0.17 deleterious(0) possibly_damaging(0.832) TCGA-DY-A1DC-01 1 32262199 32262199 C T SPOCD1 Missense_Mutation p.D755N 0.34 deleterious(0) probably_damaging(0.962) TCGA-DY-A1DC-01 1 35227018 35227018 A T GJB4 Missense_Mutation p.T55S 0.35 deleterious(0.04) probably_damaging(0.995) TCGA-DY-A1DC-01 1 37941446 37941446 A T ZC3H12A Nonsense_Mutation p.K117* 0.41 TCGA-DY-A1DC-01 1 41976080 41976080 G A HIVEP3 3'UTR 0.42 TCGA-DY-A1DC-01 1 46509456 46509456 C T PIK3R3 Silent p.L425L 0.39 TCGA-DY-A1DC-01 20 23064606 23064606 G T CD93 Missense_Mutation p.T647K 0.19 deleterious(0.01) possibly_damaging(0.642) TCGA-DY-A1DC-01 20 51872956 51872956 G A TSHZ2 Missense_Mutation p.E987K 0.59 deleterious(0) possibly_damaging(0.823) TCGA-DY-A1DC-01 20 62324588 62324588 C G RTEL1 Missense_Mutation p.H1006D 0.20 tolerated(0.07) benign(0.042) TCGA-DY-A1DC-01 21 38525452 38525452 A T TTC3 Missense_Mutation p.Y872F 0.15 tolerated(0.66) benign(0.013) TCGA-DY-A1DC-01 21 45959553 45959553 A C KRTAP10-1 Missense_Mutation p.S161A 0.39 tolerated(0.06) unknown(0) TCGA-DY-A1DC-01 22 24580812 24580817 CTTTCA - SUSD2 In_Frame_Del p.F232_T233del 0.13 TCGA-DY-A1DC-01 22 42092938 42092938 C G C22orf46 3'UTR 0.64 TCGA-DY-A1DC-01 22 42456978 42456978 A G NAGA Missense_Mutation p.Y351H 0.58 tolerated(0.13) possibly_damaging(0.786) TCGA-DY-A1DC-01 2 106713247 106713247 T C UXS1 Missense_Mutation p.E358G 0.35 tolerated(0.37) benign(0.086) TCGA-DY-A1DC-01 2 15608582 15608582 C G NBAS Missense_Mutation p.E601Q 0.42 tolerated(0.08) possibly_damaging(0.662) TCGA-DY-A1DC-01 2 179410403 179410403 C T TTN Missense_Mutation p.G31812S 0.30 TCGA-DY-A1DC-01 2 179449336 179449336 T C TTN Intron 0.11 TCGA-DY-A1DC-01 2 179472634 179472634 C A TTN Missense_Mutation p.R17627L 0.37 TCGA-DY-A1DC-01 2 179591845 179591845 T A TTN Silent p.T6749T 0.16 TCGA-DY-A1DC-01 2 190927004 190927004 C G MSTN Missense_Mutation p.E107Q 0.37 deleterious(0.03) probably_damaging(0.955) TCGA-DY-A1DC-01 2 202483686 202483686 G C ALS2CR11 Missense_Mutation p.N56K 0.37 tolerated(0.6) benign(0.006) TCGA-DY-A1DC-01 2 234873393 234873393 G A TRPM8 Missense_Mutation p.R624Q 0.17 tolerated(0.08) benign(0.027) TCGA-DY-A1DC-01 2 3750040 3750040 G A ALLC Missense_Mutation p.D355N 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-DY-A1DC-01 2 69297841 69297841 T C ANTXR1 Missense_Mutation p.M120T 0.32 tolerated(0.05) possibly_damaging(0.659) TCGA-DY-A1DC-01 2 98409024 98409024 G A TMEM131 Silent p.P1323P 0.32 TCGA-DY-A1DC-01 3 125826045 125826045 T C ALDH1L1 Missense_Mutation p.M808V 0.29 deleterious(0.01) benign(0.021) TCGA-DY-A1DC-01 3 130287019 130287019 C T COL6A6 Missense_Mutation p.R658W 0.20 deleterious(0.04) benign(0.06) TCGA-DY-A1DC-01 3 130947448 130947448 G T NEK11 Missense_Mutation p.E492D 0.54 tolerated(0.28) benign(0.008) TCGA-DY-A1DC-01 3 142102234 142102234 G A XRN1 Missense_Mutation p.R842C 0.21 deleterious(0.04) possibly_damaging(0.586) TCGA-DY-A1DC-01 3 146239397 146239397 T C PLSCR1 Silent p.R224R 0.20 TCGA-DY-A1DC-01 3 147130434 147130434 A G ZIC1 Missense_Mutation p.Y371C 0.33 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DC-01 3 151545933 151545933 T G AADAC Nonsense_Mutation p.Y391* 0.24 TCGA-DY-A1DC-01 3 178742984 178742984 T A ZMAT3 Nonsense_Mutation p.R231* 0.22 TCGA-DY-A1DC-01 3 186504482 186504482 T G EIF4A2 Intron 0.10 TCGA-DY-A1DC-01 3 37107253 37107253 C T LRRFIP2 Intron 0.50 TCGA-DY-A1DC-01 3 45038579 45038579 T C EXOSC7 Silent p.C85C 0.10 TCGA-DY-A1DC-01 3 52800367 52800367 G T NEK4 Missense_Mutation p.H129N 0.34 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DC-01 3 58519219 58519219 A T ACOX2 Missense_Mutation p.V179E 0.24 deleterious(0.01) benign(0.33) TCGA-DY-A1DC-01 3 62063923 62063924 - T PTPRG Frame_Shift_Ins p.Q205Sfs*24 0.14 TCGA-DY-A1DC-01 3 65607705 65607705 A G MAGI1 Silent p.S124S 0.34 TCGA-DY-A1DC-01 4 110980783 110980783 C G ELOVL6 Missense_Mutation p.V117L 0.31 tolerated(0.18) benign(0.065) TCGA-DY-A1DC-01 4 120486475 120486475 C T PDE5A Splice_Site p.X331_splice 0.35 TCGA-DY-A1DC-01 4 156831349 156831349 C A TDO2 Missense_Mutation p.L202M 0.26 deleterious(0.04) probably_damaging(0.961) TCGA-DY-A1DC-01 4 15690702 15690702 A G FAM200B 3'UTR 0.51 TCGA-DY-A1DC-01 4 15985929 15985929 G T PROM1 Missense_Mutation p.T777N 0.49 deleterious(0) possibly_damaging(0.593) TCGA-DY-A1DC-01 4 167022090 167022090 T A TLL1 3'UTR 0.44 TCGA-DY-A1DC-01 4 167656131 167656131 C T SPOCK3 Missense_Mutation p.D418N 0.15 tolerated_low_confidence(0.27) unknown(0) TCGA-DY-A1DC-01 4 177241161 177241161 C T SPCS3 5'UTR 0.33 TCGA-DY-A1DC-01 4 25678527 25678527 T A SLC34A2 3'UTR 0.40 TCGA-DY-A1DC-01 4 39188189 39188189 C A WDR19 Silent p.R43R 0.30 TCGA-DY-A1DC-01 4 5664855 5664855 C G EVC2 Missense_Mutation p.S375T 0.27 deleterious(0.05) possibly_damaging(0.601) TCGA-DY-A1DC-01 4 89591099 89591099 A G HERC3 Silent p.R574R 0.29 TCGA-DY-A1DC-01 5 112175576 112175576 C T APC Nonsense_Mutation p.Q1429* 0.54 TCGA-DY-A1DC-01 5 112769828 112769828 G A TSSK1B Missense_Mutation p.R237C 0.52 deleterious(0.01) benign(0.053) TCGA-DY-A1DC-01 5 137589745 137589745 C T GFRA3 Splice_Site p.X297_splice 0.38 TCGA-DY-A1DC-01 5 140203403 140203403 G A PCDHA5 Silent p.A681A 0.40 TCGA-DY-A1DC-01 5 140591198 140591198 C T PCDHB12 3'UTR 0.34 TCGA-DY-A1DC-01 5 142661392 142661392 A C NR3C1 3'UTR 0.45 TCGA-DY-A1DC-01 5 26885951 26885951 G A CDH9 Missense_Mutation p.R552W 0.37 deleterious(0) possibly_damaging(0.727) TCGA-DY-A1DC-01 5 90049411 90049411 G C GPR98 Missense_Mutation p.Q3714H 0.28 probably_damaging(0.948) TCGA-DY-A1DC-01 6 117645542 117645542 G A ROS1 Missense_Mutation p.T1865I 0.41 tolerated(0.1) benign(0.001) TCGA-DY-A1DC-01 6 42612253 42612253 T C UBR2 Missense_Mutation p.Y755H 0.25 tolerated(0.61) benign(0.002) TCGA-DY-A1DC-01 6 51889913 51889913 A G PKHD1 Silent p.V1565V 0.09 TCGA-DY-A1DC-01 6 83843971 83843971 A T DOPEY1 Silent p.I945I 0.38 TCGA-DY-A1DC-01 6 86223808 86223808 G T SNX14 Nonsense_Mutation p.S846* 0.21 TCGA-DY-A1DC-01 6 97246935 97246935 G A GPR63 Nonsense_Mutation p.R225* 0.27 TCGA-DY-A1DC-01 7 138262232 138262232 C T TRIM24 Missense_Mutation p.P719S 0.23 tolerated(0.18) possibly_damaging(0.608) TCGA-DY-A1DC-01 7 45108041 45108041 G A CCM2 Splice_Site p.X179_splice 0.24 TCGA-DY-A1DC-01 7 48428801 48428801 G A ABCA13 Missense_Mutation p.G3880R 0.39 probably_damaging(1) TCGA-DY-A1DC-01 7 50191071 50191071 G A C7orf72 Missense_Mutation p.G371S 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-DY-A1DC-01 7 73246748 73246748 G A CLDN4 3'UTR 0.09 TCGA-DY-A1DC-01 7 99434084 99434084 C G CYP3A43 Missense_Mutation p.T27S 0.58 tolerated(0.12) benign(0.028) TCGA-DY-A1DC-01 8 108315592 108315592 A G ANGPT1 Missense_Mutation p.L271S 0.16 tolerated(0.79) benign(0.013) TCGA-DY-A1DC-01 8 114388983 114388983 G A CSMD3 Intron 0.07 TCGA-DY-A1DC-01 8 141678457 141678457 C T PTK2 Missense_Mutation p.E939K 0.61 tolerated(0.05) probably_damaging(0.998) TCGA-DY-A1DC-01 8 33451072 33451072 G A DUSP26 Missense_Mutation p.R139W 0.56 deleterious(0) benign(0.017) TCGA-DY-A1DC-01 8 38250441 38250441 C T LETM2 Silent p.D96D 0.50 TCGA-DY-A1DC-01 8 55534038 55534038 T G RP1 Missense_Mutation p.L171R 0.09 deleterious(0) probably_damaging(0.953) TCGA-DY-A1DC-01 8 67039434 67039434 A C TRIM55 5'UTR 0.19 TCGA-DY-A1DC-01 8 71487172 71487172 A G TRAM1 Missense_Mutation p.S374P 0.21 deleterious(0.04) possibly_damaging(0.865) TCGA-DY-A1DC-01 8 7305422 7305422 C T SPAG11B 3'Flank 0.76 TCGA-DY-A1DC-01 8 75756320 75756320 T A PI15 Silent p.S126S 0.20 TCGA-DY-A1DC-01 8 77765695 77765695 A G ZFHX4 Missense_Mutation p.T2180A 0.23 probably_damaging(0.992) TCGA-DY-A1DC-01 8 88886279 88886279 G A DCAF4L2 5'UTR 0.19 TCGA-DY-A1DC-01 9 131370209 131370209 G A SPTAN1 Missense_Mutation p.G1409R 0.33 deleterious(0.02) possibly_damaging(0.708) TCGA-DY-A1DC-01 9 137591756 137591756 G A COL5A1 Silent p.A93A 0.30 TCGA-DY-A1DC-01 9 137727033 137727033 C A COL5A1 Missense_Mutation p.L1785M 0.46 unknown(0) TCGA-DY-A1DC-01 9 27524677 27524677 C A IFNK Missense_Mutation p.Q115K 0.35 tolerated(0.3) benign(0.166) TCGA-DY-A1DC-01 9 98774848 98774848 T A ERCC6L2 Missense_Mutation p.F311Y 0.14 tolerated(0.25) possibly_damaging(0.801) TCGA-DY-A1DC-01 9 98774850 98774850 C A ERCC6L2 Missense_Mutation p.Q312K 0.14 tolerated(0.25) benign(0.022) TCGA-DY-A1DC-01 9 98774851 98774851 A G ERCC6L2 Missense_Mutation p.Q312R 0.14 tolerated(0.33) benign(0.013) TCGA-DY-A1DC-01 X 152228512 152228512 G A PNMA3 3'UTR 0.60 TCGA-DY-A1DC-01 X 22292291 22292291 C T ZNF645 Nonsense_Mutation p.R395* 0.60 TCGA-DY-A1DC-01 X 74698819 74698819 A G ZDHHC15 Silent p.V55V 0.17 TCGA-DY-A1DD-01 10 134006187 134006187 C T DPYSL4 Missense_Mutation p.P52S 0.21 deleterious(0.01) benign(0.428) TCGA-DY-A1DD-01 10 15138522 15138522 G T C10orf111 Missense_Mutation p.P101H 0.44 tolerated_low_confidence(0.08) unknown(0) TCGA-DY-A1DD-01 11 110124812 110124812 C T RDX Missense_Mutation p.R273H 0.38 deleterious(0.03) benign(0.07) TCGA-DY-A1DD-01 11 113701632 113701632 C T USP28 Silent p.V289V 0.40 TCGA-DY-A1DD-01 11 119205979 119205979 G A RNF26 Silent p.T49T 0.32 TCGA-DY-A1DD-01 11 121028724 121028724 G A TECTA Missense_Mutation p.V1494I 0.33 tolerated(0.36) probably_damaging(0.957) TCGA-DY-A1DD-01 11 49175956 49175956 T G FOLH1 Missense_Mutation p.K571T 0.05 tolerated(0.07) benign(0.145) TCGA-DY-A1DD-01 11 61295556 61295556 C T SYT7 Silent p.T226T 0.39 TCGA-DY-A1DD-01 12 101012348 101012348 G T GAS2L3 Nonsense_Mutation p.E211* 0.50 TCGA-DY-A1DD-01 12 101012349 101012349 A G GAS2L3 Missense_Mutation p.E211G 0.47 tolerated(0.99) benign(0.009) TCGA-DY-A1DD-01 12 10339027 10339028 - G TMEM52B Frame_Shift_Ins p.V30Gfs*36 0.24 TCGA-DY-A1DD-01 12 108128244 108128244 A T PRDM4 Missense_Mutation p.L717I 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-DY-A1DD-01 12 117718606 117718606 T G NOS1 Missense_Mutation p.Q483P 0.36 deleterious(0) probably_damaging(0.996) TCGA-DY-A1DD-01 12 49396782 49396782 C T PRKAG1 Missense_Mutation p.R308Q 0.39 deleterious(0) probably_damaging(1) TCGA-DY-A1DD-01 12 50369471 50369471 C T AQP6 3'UTR 0.52 TCGA-DY-A1DD-01 12 71965354 71965354 G A LGR5 Silent p.Q377Q 0.28 TCGA-DY-A1DD-01 12 7586073 7586073 A G CD163L1 Silent p.D114D 0.29 TCGA-DY-A1DD-01 12 8687067 8687067 G C CLEC4E 3'UTR 0.45 TCGA-DY-A1DD-01 13 103450845 103450845 C T KDELC1 Missense_Mutation p.G59E 0.31 deleterious(0.04) probably_damaging(0.982) TCGA-DY-A1DD-01 13 114324053 114324053 G A GRK1 Missense_Mutation p.V251M 0.24 deleterious(0) probably_damaging(0.976) TCGA-DY-A1DD-01 13 32722002 32722002 T G FRY Missense_Mutation p.L437R 0.24 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DD-01 13 37598536 37598536 C A SUPT20H Missense_Mutation p.G458V 0.20 deleterious(0) probably_damaging(0.935) TCGA-DY-A1DD-01 13 50207620 50207620 T - ARL11 3'UTR 0.12 TCGA-DY-A1DD-01 13 50656421 50656421 A G DLEU1 5'UTR 0.13 TCGA-DY-A1DD-01 13 67801507 67801507 G C PCDH9 Missense_Mutation p.P356A 0.06 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DD-01 14 106387034 106387034 C T KIAA0125 Missense_Mutation p.T28M 0.87 deleterious_low_confidence(0) benign(0.001) TCGA-DY-A1DD-01 14 21360033 21360033 G A RNASE3 Missense_Mutation p.R63H 0.36 tolerated(0.69) benign(0.102) TCGA-DY-A1DD-01 14 39703358 39703358 A G MIA2 Missense_Mutation p.I14V 0.92 tolerated(0.11) benign(0.138) TCGA-DY-A1DD-01 14 52481904 52481904 C T NID2 Missense_Mutation p.V1040M 0.54 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DD-01 14 69993998 69993998 C T PLEKHD1 Missense_Mutation p.R384W 0.37 deleterious(0.01) possibly_damaging(0.739) TCGA-DY-A1DD-01 14 71275608 71275608 C T MAP3K9 Nonsense_Mutation p.W94* 0.14 TCGA-DY-A1DD-01 14 73637706 73637706 G A PSEN1 Missense_Mutation p.V97M 0.38 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DD-01 14 93118468 93118468 G A RIN3 Silent p.A358A 0.27 TCGA-DY-A1DD-01 15 26026234 26026234 C T ATP10A Missense_Mutation p.E196K 0.69 deleterious(0) probably_damaging(0.996) TCGA-DY-A1DD-01 15 86269655 86269655 C A AKAP13 Missense_Mutation p.L2258I 0.73 deleterious(0) probably_damaging(0.983) TCGA-DY-A1DD-01 15 93616210 93616210 C T RGMA Missense_Mutation p.G30E 0.08 tolerated(0.28) possibly_damaging(0.906) TCGA-DY-A1DD-01 16 242998 242998 T C LUC7L Missense_Mutation p.K235R 0.08 tolerated(0.36) benign(0.267) TCGA-DY-A1DD-01 16 4016376 4016376 G T ADCY9 Missense_Mutation p.N1154K 0.34 tolerated(1) benign(0) TCGA-DY-A1DD-01 16 4850570 4850570 G A ROGDI Silent p.L89L 0.38 TCGA-DY-A1DD-01 17 18565376 18565376 A T ZNF286B Silent p.A481A 0.08 TCGA-DY-A1DD-01 17 33477186 33477186 C T UNC45B Missense_Mutation p.R109W 0.36 deleterious(0) benign(0.007) TCGA-DY-A1DD-01 17 43483085 43483085 T A ARHGAP27 5'UTR 0.45 TCGA-DY-A1DD-01 17 68174852 68174852 A - KCNJ2 3'UTR 0.26 TCGA-DY-A1DD-01 17 6917470 6917470 C T AC040977.1 Missense_Mutation p.A96T 0.77 tolerated_low_confidence(0.2) benign(0.16) TCGA-DY-A1DD-01 17 72297234 72297234 T A DNAI2 Missense_Mutation p.I305N 0.11 deleterious(0.01) benign(0.027) TCGA-DY-A1DD-01 17 73831795 73831795 C T UNC13D Missense_Mutation p.E554K 0.54 deleterious(0.05) benign(0.046) TCGA-DY-A1DD-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.93 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DD-01 18 46448103 46448103 C A SMAD7 Missense_Mutation p.S307I 0.81 deleterious(0) probably_damaging(0.981) TCGA-DY-A1DD-01 18 48593532 48593532 A T SMAD4 Missense_Mutation p.K428M 0.74 deleterious(0) probably_damaging(0.988) TCGA-DY-A1DD-01 19 13941113 13941113 G A ZSWIM4 Missense_Mutation p.R740Q 0.48 tolerated(0.15) unknown(0) TCGA-DY-A1DD-01 19 35225898 35225898 G A ZNF181 5'UTR 0.10 TCGA-DY-A1DD-01 19 39087729 39087729 G T MAP4K1 Missense_Mutation p.T629K 0.10 deleterious(0.01) possibly_damaging(0.726) TCGA-DY-A1DD-01 19 56320620 56320620 G A NLRP11 Silent p.N452N 0.46 TCGA-DY-A1DD-01 19 6744988 6744988 T A TRIP10 Missense_Mutation p.F323I 0.15 deleterious(0.02) probably_damaging(0.941) TCGA-DY-A1DD-01 19 8191600 8191600 G C FBN3 Missense_Mutation p.L805V 0.11 tolerated(0.52) benign(0.002) TCGA-DY-A1DD-01 19 8203386 8203386 C T FBN3 Missense_Mutation p.G310S 0.41 tolerated(0.17) possibly_damaging(0.871) TCGA-DY-A1DD-01 1 150972986 150972986 C A FAM63A Missense_Mutation p.V276F 0.35 deleterious(0.03) possibly_damaging(0.887) TCGA-DY-A1DD-01 1 153122235 153122235 C T SPRR2G 3'UTR 0.53 TCGA-DY-A1DD-01 1 155451193 155451193 A C ASH1L Missense_Mutation p.L490V 0.35 tolerated_low_confidence(0.33) benign(0.006) TCGA-DY-A1DD-01 1 15817496 15817496 C T CASP9 3'Flank 0.50 TCGA-DY-A1DD-01 1 173174575 173174575 G A TNFSF4 Intron 0.54 TCGA-DY-A1DD-01 1 173826889 173826889 T C DARS2 3'UTR 0.12 TCGA-DY-A1DD-01 1 175372552 175372552 G A TNR Missense_Mutation p.R234W 0.34 deleterious(0.02) possibly_damaging(0.836) TCGA-DY-A1DD-01 1 177250251 177250251 C T BRINP2 Missense_Mutation p.R647W 0.39 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DD-01 1 21807452 21807452 G T NBPF3 Missense_Mutation p.D471Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DD-01 1 228589824 228589824 C T TRIM11 Silent p.Q149Q 0.49 TCGA-DY-A1DD-01 1 24687367 24687367 G A STPG1 Missense_Mutation p.P301L 0.40 tolerated(0.34) benign(0.194) TCGA-DY-A1DD-01 1 47685413 47685413 G A TAL1 Silent p.A325A 0.46 TCGA-DY-A1DD-01 1 49100247 49100247 C T AGBL4 Missense_Mutation p.R290H 0.48 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DD-01 1 92789076 92789076 T G RPAP2 Missense_Mutation p.F200C 0.49 tolerated(0.18) benign(0.004) TCGA-DY-A1DD-01 1 99203797 99203797 C T SNX7 Missense_Mutation p.P377L 0.51 tolerated(0.06) benign(0.006) TCGA-DY-A1DD-01 20 18393296 18393300 CTGGG - DZANK1 Frame_Shift_Del p.S474Rfs*25 0.80 TCGA-DY-A1DD-01 21 43547822 43547822 G A UMODL1 Missense_Mutation p.G1319S 0.82 deleterious(0) probably_damaging(1) TCGA-DY-A1DD-01 21 47817955 47817955 C T PCNT Missense_Mutation p.R1492C 0.69 possibly_damaging(0.876) TCGA-DY-A1DD-01 22 23040603 23040603 C A IGLV2-23 Silent p.S17S 0.47 TCGA-DY-A1DD-01 22 50169244 50169244 T A BRD1 Missense_Mutation p.R996S 0.48 deleterious(0) possibly_damaging(0.892) TCGA-DY-A1DD-01 2 100167837 100167837 C T AFF3 3'UTR 0.35 TCGA-DY-A1DD-01 2 131103401 131103401 G A IMP4 Silent p.T163T 0.49 TCGA-DY-A1DD-01 2 177033834 177033834 T A HOXD3 5'UTR 0.42 TCGA-DY-A1DD-01 2 180634397 180634397 T C ZNF385B Missense_Mutation p.K29R 0.93 tolerated(0.11) benign(0.002) TCGA-DY-A1DD-01 2 198511328 198511328 T A RFTN2 Missense_Mutation p.N68Y 0.09 deleterious(0.03) benign(0.017) TCGA-DY-A1DD-01 2 207827152 207827152 A G CPO Silent p.R197R 0.85 TCGA-DY-A1DD-01 2 209302575 209302575 G A PTH2R Missense_Mutation p.R127H 0.50 tolerated(0.24) benign(0.016) TCGA-DY-A1DD-01 2 210561666 210561667 - A MAP2 Frame_Shift_Ins p.T1474Nfs*22 0.36 TCGA-DY-A1DD-01 2 220285595 220285595 C T DES Missense_Mutation p.R315C 0.39 deleterious(0) probably_damaging(0.977) TCGA-DY-A1DD-01 2 240921553 240921553 T C NDUFA10 Intron 0.16 TCGA-DY-A1DD-01 2 33953001 33953001 C T AC009499.1 Intron 0.46 TCGA-DY-A1DD-01 2 3745027 3745027 T C ALLC Silent p.I277I 0.44 TCGA-DY-A1DD-01 2 43939418 43939418 G C PLEKHH2 Missense_Mutation p.E786Q 0.27 deleterious(0) benign(0.19) TCGA-DY-A1DD-01 3 113955429 113955429 C A ZNF80 Nonsense_Mutation p.E165* 0.51 TCGA-DY-A1DD-01 3 138341076 138341076 C T FAIM Missense_Mutation p.T87I 0.41 tolerated(0.12) benign(0.18) TCGA-DY-A1DD-01 3 138668423 138668423 C T C3orf72 Silent p.I54I 0.36 TCGA-DY-A1DD-01 3 142030340 142030340 C A XRN1 3'UTR 0.44 TCGA-DY-A1DD-01 3 142681549 142681549 G A PAQR9 Silent p.R210R 0.44 TCGA-DY-A1DD-01 3 157004361 157004361 G T VEPH1 Missense_Mutation p.P705T 0.48 deleterious(0) probably_damaging(0.994) TCGA-DY-A1DD-01 3 186395001 186395001 G A HRG Missense_Mutation p.E303K 0.43 tolerated(0.27) benign(0) TCGA-DY-A1DD-01 3 19436627 19436627 G A KCNH8 Missense_Mutation p.R334H 0.38 deleterious(0) probably_damaging(1) TCGA-DY-A1DD-01 3 37514868 37514868 G A ITGA9 Missense_Mutation p.G113R 0.28 deleterious(0) probably_damaging(1) TCGA-DY-A1DD-01 3 38354566 38354566 G A SLC22A14 Missense_Mutation p.A341T 0.39 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DD-01 3 42605030 42605030 C T SEC22C Missense_Mutation p.A111T 0.35 tolerated(0.15) benign(0.272) TCGA-DY-A1DD-01 3 46401365 46401365 A G CCR2 3'UTR 0.13 TCGA-DY-A1DD-01 3 88104676 88104676 G A CGGBP1 Missense_Mutation p.L151F 0.09 tolerated(0.18) benign(0.383) TCGA-DY-A1DD-01 3 9543957 9543957 C T LHFPL4 Missense_Mutation p.G228R 0.48 tolerated(0.23) benign(0.405) TCGA-DY-A1DD-01 4 1018763 1018763 C T FGFRL1 Silent p.I381I 0.62 TCGA-DY-A1DD-01 4 126238184 126238184 C A FAT4 Silent p.G206G 0.47 TCGA-DY-A1DD-01 4 156638344 156638344 G T GUCY1A3 Missense_Mutation p.G536W 0.45 deleterious(0) probably_damaging(1) TCGA-DY-A1DD-01 4 1902850 1902850 A T WHSC1 Missense_Mutation p.N157Y 0.46 tolerated(0.07) benign(0.396) TCGA-DY-A1DD-01 4 25806305 25806305 A T SEL1L3 Missense_Mutation p.L545H 0.06 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DD-01 4 39291552 39291552 C T RFC1 Silent p.S1093S 0.38 TCGA-DY-A1DD-01 4 55569869 55569914 CTCCTTTTCTGAAACCAGCAGACTAAACTACAGGAGAAATATAATA TCTCCTTTTCTGAAACCAGCAGACTAAACTACAGGAGAAATATAATAG KIT Splice_Site p.X253_splice 0.14 TCGA-DY-A1DD-01 4 55569914 55569915 - G KIT Frame_Shift_Ins p.S261Rfs*6 0.22 TCGA-DY-A1DD-01 4 76841113 76841113 C A NAAA Missense_Mutation p.K306N 0.38 tolerated(0.06) benign(0.34) TCGA-DY-A1DD-01 4 83822028 83822028 T C THAP9 Missense_Mutation p.F25L 0.09 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DD-01 4 85626556 85626556 C T WDFY3 Missense_Mutation p.D2776N 0.11 deleterious(0.01) possibly_damaging(0.733) TCGA-DY-A1DD-01 4 88537825 88537825 C T DSPP 3'UTR 0.38 TCGA-DY-A1DD-01 5 112175322 112175322 C - APC Frame_Shift_Del p.S1344* 0.38 TCGA-DY-A1DD-01 5 127685090 127685090 A T FBN2 Missense_Mutation p.C980S 0.90 deleterious(0) probably_damaging(0.91) TCGA-DY-A1DD-01 5 146257573 146257573 G A PPP2R2B Intron 0.70 TCGA-DY-A1DD-01 5 150112981 150112981 T C DCTN4 Silent p.R162R 0.10 TCGA-DY-A1DD-01 5 154287314 154287314 C T GEMIN5 Silent p.K744K 0.71 TCGA-DY-A1DD-01 5 176005458 176005458 T A CDHR2 Missense_Mutation p.L556Q 0.82 deleterious(0.02) probably_damaging(0.968) TCGA-DY-A1DD-01 5 76355533 76355533 T A AGGF1 Silent p.T603T 0.12 TCGA-DY-A1DD-01 5 76355535 76355535 T A AGGF1 Missense_Mutation p.F604Y 0.11 tolerated(0.13) possibly_damaging(0.622) TCGA-DY-A1DD-01 6 136590643 136590643 G T BCLAF1 Silent p.S717S 0.09 TCGA-DY-A1DD-01 6 168710882 168710882 C T DACT2 Silent p.P208P 0.51 TCGA-DY-A1DD-01 6 2948717 2948717 C T SERPINB6 Missense_Mutation p.V316M 0.43 tolerated(0.07) benign(0.271) TCGA-DY-A1DD-01 6 30676047 30676047 G A MDC1 Missense_Mutation p.T770M 0.43 deleterious(0) benign(0.446) TCGA-DY-A1DD-01 6 73904984 73904984 G T KCNQ5 Missense_Mutation p.E901D 0.45 tolerated_low_confidence(0.56) benign(0.076) TCGA-DY-A1DD-01 6 88119576 88119576 G A C6ORF165 Missense_Mutation p.E7K 0.42 deleterious(0) probably_damaging(0.988) TCGA-DY-A1DD-01 7 106508083 106508083 G A PIK3CG Missense_Mutation p.R26H 0.27 tolerated_low_confidence(0.53) benign(0) TCGA-DY-A1DD-01 7 107323968 107323968 A G SLC26A4 Silent p.K329K 0.24 TCGA-DY-A1DD-01 7 141321598 141321598 C A AGK Silent p.I195I 0.28 TCGA-DY-A1DD-01 7 142569702 142569702 G A TRPV6 Missense_Mutation p.R646C 0.17 deleterious(0) possibly_damaging(0.893) TCGA-DY-A1DD-01 7 143002185 143002185 C T CASP2 3'UTR 0.58 TCGA-DY-A1DD-01 7 150730984 150730984 G T ABCB8 Missense_Mutation p.V130F 0.29 tolerated(0.66) benign(0.005) TCGA-DY-A1DD-01 7 2472417 2472417 C T CHST12 Missense_Mutation p.P48L 0.34 tolerated(0.13) benign(0.007) TCGA-DY-A1DD-01 7 43546844 43546844 C T HECW1 Missense_Mutation p.P1247L 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-DY-A1DD-01 7 43917510 43917510 C T URGCP Missense_Mutation p.V518M 0.17 deleterious(0.03) benign(0.013) TCGA-DY-A1DD-01 7 43917673 43917673 G A URGCP Silent p.D463D 0.70 TCGA-DY-A1DD-01 7 48046831 48046831 C A SUN3 Missense_Mutation p.K141N 0.68 tolerated(0.09) benign(0.209) TCGA-DY-A1DD-01 7 82785222 82785222 T A PCLO Missense_Mutation p.E245D 0.26 unknown(0) TCGA-DY-A1DD-01 7 889564 889564 C T SUN1 Intron 0.22 TCGA-DY-A1DD-01 7 89897634 89897634 G C C7orf63 Missense_Mutation p.R156S 0.09 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DD-01 7 95221867 95221867 A G PDK4 Missense_Mutation p.I191T 0.25 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DD-01 7 99023213 99023213 C T ATP5J2-PTCD1 Silent p.G363G 0.22 TCGA-DY-A1DD-01 8 10756077 10756077 C T XKR6 Silent p.R437R 0.80 TCGA-DY-A1DD-01 8 124381300 124381300 G C ATAD2 Missense_Mutation p.N349K 0.29 tolerated(0.67) benign(0.006) TCGA-DY-A1DD-01 8 131826350 131826350 C T ADCY8 Missense_Mutation p.A960T 0.21 deleterious(0) probably_damaging(0.954) TCGA-DY-A1DD-01 8 22049654 22049654 G T BMP1 Silent p.A390A 0.50 TCGA-DY-A1DD-01 8 23112920 23112920 C T CHMP7 Missense_Mutation p.T211I 0.45 tolerated(0.39) benign(0.063) TCGA-DY-A1DD-01 8 23112928 23112928 G A CHMP7 Missense_Mutation p.E214K 0.45 tolerated(0.3) possibly_damaging(0.642) TCGA-DY-A1DD-01 8 70971028 70971028 G A PRDM14 Silent p.Y411Y 0.38 TCGA-DY-A1DD-01 8 86572556 86572556 T A REXO1L1P 3'UTR 0.09 TCGA-DY-A1DD-01 8 95531470 95531470 A - KIAA1429 Frame_Shift_Del p.I753Lfs*49 0.25 TCGA-DY-A1DD-01 9 117063589 117063589 G A COL27A1 Missense_Mutation p.R1594H 0.39 unknown(0) TCGA-DY-A1DD-01 9 117808873 117808873 G A TNC Silent p.F1647F 0.35 TCGA-DY-A1DD-01 9 119737511 119737511 A G ASTN2 Missense_Mutation p.V571A 0.38 deleterious(0.01) unknown(0) TCGA-DY-A1DD-01 9 139656250 139656250 G A LCN15 3'UTR 0.42 TCGA-DY-A1DD-01 9 140082199 140082199 G A ANAPC2 Silent p.R158R 0.44 TCGA-DY-A1DD-01 9 19378482 19378482 G T RPS6 Missense_Mutation p.T127N 0.74 tolerated(0.13) benign(0.032) TCGA-DY-A1DD-01 9 27950578 27950578 C T LINGO2 Missense_Mutation p.R31H 0.39 deleterious(0) possibly_damaging(0.648) TCGA-DY-A1DD-01 X 104465086 104465086 G A TEX13A 5'UTR 0.32 TCGA-DY-A1DD-01 X 106840751 106840751 G A FRMPD3 Missense_Mutation p.E581K 0.60 deleterious(0) benign(0.01) TCGA-DY-A1DD-01 X 115567845 115567845 G T SLC6A14 5'UTR 0.33 TCGA-DY-A1DD-01 X 117959861 117959861 G A ZCCHC12 Silent p.E218E 0.28 TCGA-DY-A1DD-01 X 12736636 12736636 T C FRMPD4 Missense_Mutation p.C1231R 0.10 deleterious_low_confidence(0) possibly_damaging(0.729) TCGA-DY-A1DD-01 X 142596797 142596797 T A SPANXN3 Missense_Mutation p.L91F 0.09 tolerated(0.14) possibly_damaging(0.582) TCGA-DY-A1DD-01 X 142596799 142596799 A T SPANXN3 Missense_Mutation p.L91I 0.08 tolerated(0.74) benign(0.223) TCGA-DY-A1DD-01 X 153716358 153716358 G A SLC10A3 Missense_Mutation p.R308C 0.28 deleterious(0.02) possibly_damaging(0.863) TCGA-DY-A1DD-01 X 154113635 154113635 C T H2AFB1 Missense_Mutation p.T104M 0.45 tolerated(0.25) benign(0.097) TCGA-DY-A1DD-01 X 3229192 3229192 T C MXRA5 Missense_Mutation p.K2351R 0.29 deleterious(0.04) benign(0.36) TCGA-DY-A1DD-01 X 43628574 43628574 C T MAOB Missense_Mutation p.G443R 0.36 deleterious(0) probably_damaging(1) TCGA-DY-A1DD-01 X 48163770 48163770 C T SSX9 RNA 0.25 TCGA-DY-A1DD-01 X 48270751 48270751 G A SSX4B Nonsense_Mutation p.R22* 0.14 TCGA-DY-A1DD-01 X 50053621 50053621 G C CCNB3 Missense_Mutation p.E818Q 0.26 tolerated(0.12) possibly_damaging(0.857) TCGA-DY-A1DD-01 X 56590491 56590491 C T UBQLN2 Missense_Mutation p.S62L 0.17 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DD-01 X 65390322 65390322 T C HEPH Intron 0.08 TCGA-DY-A1DD-01 X 71351947 71351947 G A NHSL2 Missense_Mutation p.R100Q 0.19 tolerated(0.67) benign(0.011) TCGA-DY-A1DD-01 X 78427682 78427682 C T GPR174 3'UTR 0.58 TCGA-DY-A1DD-01 X 82764546 82764546 G A POU3F4 3'UTR 0.24 TCGA-DY-A1DF-01 10 3207667 3207667 C G PITRM1 Missense_Mutation p.Q157H 0.12 tolerated(0.06) benign(0.213) TCGA-DY-A1DF-01 10 60566828 60566828 T G BICC1 Silent p.G762G 0.50 TCGA-DY-A1DF-01 10 87487712 87487712 A T GRID1 Missense_Mutation p.L478Q 0.90 tolerated(0.06) probably_damaging(0.959) TCGA-DY-A1DF-01 10 91497203 91497203 C G KIF20B Missense_Mutation p.P829A 0.89 tolerated(0.56) benign(0.012) TCGA-DY-A1DF-01 10 98773528 98773528 G A SLIT1 Missense_Mutation p.A1058V 0.87 deleterious(0.01) possibly_damaging(0.527) TCGA-DY-A1DF-01 11 1266303 1266303 C T MUC5B Silent p.S2731S 0.38 TCGA-DY-A1DF-01 11 17417398 17417398 C T ABCC8 Splice_Site p.X1400_splice 0.95 TCGA-DY-A1DF-01 11 49221878 49221878 C A FOLH1 Missense_Mutation p.D114Y 0.83 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DF-01 11 59860307 59860307 A T MS4A2 Missense_Mutation p.N122Y 0.94 tolerated(0.16) benign(0.072) TCGA-DY-A1DF-01 11 6265463 6265463 C T CNGA4 Silent p.L518L 0.14 TCGA-DY-A1DF-01 11 65780325 65780325 C T CST6 Missense_Mutation p.T90M 0.97 deleterious(0.04) probably_damaging(0.995) TCGA-DY-A1DF-01 11 9983537 9983537 G C SBF2 Missense_Mutation p.D609E 0.94 tolerated(0.11) possibly_damaging(0.447) TCGA-DY-A1DF-01 12 123480133 123480133 G A PITPNM2 Silent p.G619G 0.87 TCGA-DY-A1DF-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.92 deleterious(0.04) possibly_damaging(0.506) TCGA-DY-A1DF-01 12 49960191 49960191 C T MCRS1 Missense_Mutation p.R11H 0.29 tolerated_low_confidence(0.12) unknown(0) TCGA-DY-A1DF-01 12 53554032 53554032 A G CSAD Silent p.A373A 0.08 TCGA-DY-A1DF-01 12 8023608 8023608 G C SLC2A14 5'UTR 0.28 TCGA-DY-A1DF-01 12 81760914 81760914 C G PPFIA2 Missense_Mutation p.K506N 0.44 deleterious(0) probably_damaging(0.92) TCGA-DY-A1DF-01 13 21357920 21357920 A G XPO4 Missense_Mutation p.F1133L 0.55 deleterious(0) probably_damaging(1) TCGA-DY-A1DF-01 14 20020264 20020264 G A POTEM 5'UTR 0.20 TCGA-DY-A1DF-01 14 21548882 21548882 A G ARHGEF40 Missense_Mutation p.T813A 0.12 deleterious(0.01) benign(0.002) TCGA-DY-A1DF-01 14 53020161 53020161 T C GPR137C Missense_Mutation p.L99P 0.11 deleterious(0) benign(0.341) TCGA-DY-A1DF-01 14 62541873 62541873 C A SYT16 Silent p.R253R 0.92 TCGA-DY-A1DF-01 14 63416947 63416947 A C KCNH5 Missense_Mutation p.F425V 0.24 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DF-01 14 95034606 95034606 A C SERPINA4 Missense_Mutation p.Q355P 0.22 tolerated(0.24) benign(0.266) TCGA-DY-A1DF-01 15 20489482 20489482 A C CHEK2P2 RNA 0.26 TCGA-DY-A1DF-01 15 24927580 24927580 A C NPAP1 3'UTR 0.86 TCGA-DY-A1DF-01 15 25940054 25940054 G A ATP10A Silent p.S1000S 0.35 TCGA-DY-A1DF-01 15 54305899 54305899 G C UNC13C Missense_Mutation p.V267L 0.50 tolerated_low_confidence(0.28) probably_damaging(0.994) TCGA-DY-A1DF-01 16 24372717 24372717 G A CACNG3 Missense_Mutation p.A161T 0.59 tolerated(0.23) possibly_damaging(0.746) TCGA-DY-A1DF-01 16 3064068 3064068 G A CLDN9 3'UTR 0.67 TCGA-DY-A1DF-01 16 31336034 31336034 G A ITGAM Silent p.T741T 0.29 TCGA-DY-A1DF-01 16 47684505 47684505 T C PHKB Silent p.L616L 0.30 TCGA-DY-A1DF-01 16 5041902 5041902 C T SEC14L5 Missense_Mutation p.R180C 0.51 deleterious(0) possibly_damaging(0.847) TCGA-DY-A1DF-01 16 55703493 55703493 G A SLC6A2 Silent p.P97P 0.57 TCGA-DY-A1DF-01 16 83378513 83378513 C T CDH13 Missense_Mutation p.P275L 0.60 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DF-01 16 84271071 84271071 G A KCNG4 Silent p.D7D 0.20 TCGA-DY-A1DF-01 17 7246795 7246795 C T ACAP1 Missense_Mutation p.R148W 0.96 deleterious(0) possibly_damaging(0.777) TCGA-DY-A1DF-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.97 tolerated(0.13) possibly_damaging(0.631) TCGA-DY-A1DF-01 17 78857615 78857615 G T RPTOR Missense_Mutation p.C562F 0.90 deleterious(0) probably_damaging(0.949) TCGA-DY-A1DF-01 17 8053980 8053980 C A PER1 Missense_Mutation p.R15S 0.80 tolerated_low_confidence(0.16) benign(0.031) TCGA-DY-A1DF-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.87 deleterious(0.03) probably_damaging(1) TCGA-DY-A1DF-01 18 5395107 5395107 G A EPB41L3 Nonsense_Mutation p.R1038* 0.91 TCGA-DY-A1DF-01 19 1592612 1592612 C T MBD3 Missense_Mutation p.E7K 0.88 deleterious(0.01) benign(0.242) TCGA-DY-A1DF-01 19 30935856 30935856 A G ZNF536 Missense_Mutation p.K463E 0.10 tolerated(0.06) benign(0.113) TCGA-DY-A1DF-01 19 39911447 39911447 C T PLEKHG2 Nonsense_Mutation p.R452* 0.95 TCGA-DY-A1DF-01 19 40357485 40357485 A G FCGBP Silent p.R5276R 0.10 TCGA-DY-A1DF-01 19 55144696 55144696 G T LILRB1 Missense_Mutation p.R396S 0.86 deleterious(0) possibly_damaging(0.792) TCGA-DY-A1DF-01 1 103388942 103388942 G T COL11A1 Missense_Mutation p.L1202M 0.43 unknown(0) TCGA-DY-A1DF-01 1 104161653 104161653 T C AMY2A Missense_Mutation p.Y146H 0.26 deleterious(0) probably_damaging(0.974) TCGA-DY-A1DF-01 1 110527681 110527681 A C AHCYL1 Missense_Mutation p.M3L 0.28 tolerated_low_confidence(1) benign(0) TCGA-DY-A1DF-01 1 11766487 11766487 C T DRAXIN Missense_Mutation p.R58C 0.54 deleterious(0.01) possibly_damaging(0.901) TCGA-DY-A1DF-01 1 1226824 1226824 T C SCNN1D Missense_Mutation p.I748T 0.37 tolerated(0.23) benign(0.005) TCGA-DY-A1DF-01 1 15788154 15788155 - TAAC CELA2A Splice_Site p.X76_splice 0.51 TCGA-DY-A1DF-01 1 175355223 175355223 G A TNR Silent p.V574V 0.38 TCGA-DY-A1DF-01 1 176564383 176564383 G A PAPPA2 Missense_Mutation p.R548H 0.42 tolerated(0.14) benign(0.28) TCGA-DY-A1DF-01 1 181764027 181764027 C T CACNA1E Missense_Mutation p.R2019C 0.50 deleterious(0) probably_damaging(0.919) TCGA-DY-A1DF-01 1 185984511 185984511 G A HMCN1 Silent p.T1617T 0.44 TCGA-DY-A1DF-01 1 196757505 196757505 G C CFHR3 Missense_Mutation p.W197S 0.45 deleterious(0) probably_damaging(0.994) TCGA-DY-A1DF-01 1 196952103 196952103 A C CFHR5 Missense_Mutation p.E49D 0.20 deleterious(0.05) benign(0.192) TCGA-DY-A1DF-01 1 223940648 223940648 G T CAPN2 Missense_Mutation p.R375S 0.31 deleterious(0) possibly_damaging(0.729) TCGA-DY-A1DF-01 1 248113046 248113046 T A OR2L8 Missense_Mutation p.V296E 0.44 deleterious(0) probably_damaging(0.961) TCGA-DY-A1DF-01 1 27088787 27088788 - G ARID1A Frame_Shift_Ins p.Q802Sfs*15 0.30 TCGA-DY-A1DF-01 1 27744828 27744828 A G WASF2 Silent p.L121L 0.37 TCGA-DY-A1DF-01 1 44070989 44070989 G A PTPRF Silent p.Q1088Q 0.48 TCGA-DY-A1DF-01 1 52850337 52850337 A G ORC1 Missense_Mutation p.V547A 0.12 deleterious(0.02) probably_damaging(0.971) TCGA-DY-A1DF-01 1 8386060 8386060 G A SLC45A1 Missense_Mutation p.A225T 0.52 tolerated(0.26) benign(0.067) TCGA-DY-A1DF-01 20 45221075 45221075 C G SLC13A3 Missense_Mutation p.W296C 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-DY-A1DF-01 20 47248856 47248856 C T PREX1 Silent p.A1495A 0.38 TCGA-DY-A1DF-01 21 22746200 22746200 C T NCAM2 Silent p.I354I 0.52 TCGA-DY-A1DF-01 21 28211980 28211980 C T ADAMTS1 Missense_Mutation p.V652I 0.52 tolerated(0.08) benign(0.083) TCGA-DY-A1DF-01 21 31744209 31744209 C T KRTAP13-2 Missense_Mutation p.R108H 0.23 tolerated(0.55) benign(0.002) TCGA-DY-A1DF-01 21 32007640 32007640 G A KRTAP20-2 Missense_Mutation p.G20S 0.34 unknown(0) TCGA-DY-A1DF-01 22 20130620 20130620 T C ZDHHC8 Silent p.G489G 0.15 TCGA-DY-A1DF-01 22 21119220 21119220 G A PI4KA Missense_Mutation p.R865C 0.37 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DF-01 22 23438030 23438030 G A GNAZ Missense_Mutation p.V50I 0.38 tolerated(0.22) probably_damaging(0.96) TCGA-DY-A1DF-01 22 31032789 31032789 G C SLC35E4 Missense_Mutation p.G118R 0.52 deleterious(0.05) probably_damaging(0.973) TCGA-DY-A1DF-01 22 31500448 31500448 T A SMTN Missense_Mutation p.V940D 0.42 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-DY-A1DF-01 22 40257832 40257832 G A ENTHD1 Missense_Mutation p.P177L 0.51 deleterious(0.01) possibly_damaging(0.527) TCGA-DY-A1DF-01 2 121107322 121107322 G A INHBB Missense_Mutation p.G366S 0.29 tolerated(0.31) probably_damaging(0.998) TCGA-DY-A1DF-01 2 121740365 121740365 A C GLI2 Missense_Mutation p.K531T 0.54 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DF-01 2 125405518 125405518 G A CNTNAP5 Missense_Mutation p.R686H 0.33 deleterious(0.05) benign(0.013) TCGA-DY-A1DF-01 2 149522527 149522527 C T EPC2 Missense_Mutation p.P318S 0.34 tolerated(0.71) benign(0) TCGA-DY-A1DF-01 2 152235986 152235986 A C TNFAIP6 Missense_Mutation p.N258T 0.33 tolerated(0.17) benign(0.129) TCGA-DY-A1DF-01 2 152484275 152484275 T C NEB Missense_Mutation p.K3302R 0.62 probably_damaging(0.976) TCGA-DY-A1DF-01 2 152830189 152830189 C T CACNB4 Intron 0.28 TCGA-DY-A1DF-01 2 159481794 159481794 G A PKP4 Silent p.S336S 0.69 TCGA-DY-A1DF-01 2 169985011 169985011 C T LRP2 3'UTR 0.30 TCGA-DY-A1DF-01 2 179447066 179447066 G A TTN Silent p.G22039G 0.09 TCGA-DY-A1DF-01 2 179452059 179452059 G A TTN Silent p.D21293D 0.57 TCGA-DY-A1DF-01 2 179459278 179459278 C A TTN Nonsense_Mutation p.E19315* 0.10 TCGA-DY-A1DF-01 2 179500354 179500354 T G TTN Missense_Mutation p.K13899N 0.31 TCGA-DY-A1DF-01 2 179809344 179809344 A C CCDC141 Nonsense_Mutation p.L272* 0.25 TCGA-DY-A1DF-01 2 207425853 207425853 C T ADAM23 Missense_Mutation p.R391W 0.32 deleterious(0) possibly_damaging(0.809) TCGA-DY-A1DF-01 2 220396733 220396733 G A ASIC4 Silent p.S373S 0.38 TCGA-DY-A1DF-01 2 239040031 239040031 C T ESPNL Silent p.H892H 0.61 TCGA-DY-A1DF-01 2 27528677 27528678 - ATCTCC TRIM54 In_Frame_Ins p.L322_Q323insHL 0.17 TCGA-DY-A1DF-01 2 33809830 33809830 A T FAM98A 3'UTR 0.25 TCGA-DY-A1DF-01 2 68385614 68385614 G A PNO1 Missense_Mutation p.G104R 0.23 tolerated(0.13) benign(0.003) TCGA-DY-A1DF-01 2 74742120 74742120 G A TLX2 Missense_Mutation p.A63T 0.78 tolerated(0.43) benign(0) TCGA-DY-A1DF-01 2 74900583 74900583 G T SEMA4F Splice_Site p.X184_splice 0.25 TCGA-DY-A1DF-01 2 88387492 88387492 G T SMYD1 Missense_Mutation p.E142D 0.27 tolerated(0.33) benign(0.001) TCGA-DY-A1DF-01 3 120417419 120417419 C G RABL3 Missense_Mutation p.D129H 0.22 tolerated(0.08) benign(0.076) TCGA-DY-A1DF-01 3 129185862 129185862 G T IFT122 Missense_Mutation p.E282D 0.31 tolerated_low_confidence(0.46) benign(0.221) TCGA-DY-A1DF-01 3 132337445 132337445 A G ACAD11 Intron 0.59 TCGA-DY-A1DF-01 3 138187694 138187694 C T ESYT3 Nonsense_Mutation p.R469* 0.33 TCGA-DY-A1DF-01 3 138478049 138478049 A T PIK3CB Missense_Mutation p.V46E 0.64 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DF-01 3 139171980 139171980 C T RBP2 Missense_Mutation p.R128H 0.65 tolerated(0.17) benign(0.001) TCGA-DY-A1DF-01 3 148916279 148916279 C A CP Missense_Mutation p.A530S 0.34 tolerated(1) benign(0.008) TCGA-DY-A1DF-01 3 54661843 54661843 C T CACNA2D3 Silent p.F331F 0.29 TCGA-DY-A1DF-01 3 55514821 55514821 A T WNT5A Missense_Mutation p.N44K 0.04 tolerated(0.09) benign(0.027) TCGA-DY-A1DF-01 4 100870498 100870498 T A H2AFZ Missense_Mutation p.S43C 0.63 deleterious(0.03) benign(0.211) TCGA-DY-A1DF-01 4 100870499 100870499 G T H2AFZ Silent p.T42T 0.63 TCGA-DY-A1DF-01 4 122250833 122250833 T G QRFPR Missense_Mutation p.K311T 0.33 tolerated(0.05) benign(0.229) TCGA-DY-A1DF-01 4 128717033 128717033 G T HSPA4L Missense_Mutation p.Q92H 0.36 tolerated(0.16) benign(0.002) TCGA-DY-A1DF-01 4 190883032 190883032 A G FRG1 Missense_Mutation p.K229E 0.14 tolerated(0.69) benign(0.026) TCGA-DY-A1DF-01 4 53324 53324 T A ZNF595 5'UTR 0.12 TCGA-DY-A1DF-01 4 62598560 62598560 C A LPHN3 Missense_Mutation p.D161E 0.21 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DF-01 4 73169736 73169736 C T ADAMTS3 Silent p.S774S 0.30 TCGA-DY-A1DF-01 5 112170652 112170652 C A APC Nonsense_Mutation p.S583* 0.34 TCGA-DY-A1DF-01 5 112175931 112175931 A - APC Frame_Shift_Del p.N1548Tfs*17 0.39 TCGA-DY-A1DF-01 5 140038633 140038633 C T IK Missense_Mutation p.R354C 0.26 deleterious(0) probably_damaging(0.973) TCGA-DY-A1DF-01 5 140249498 140249498 C T PCDHA11 Silent p.D270D 0.35 TCGA-DY-A1DF-01 5 140788328 140788328 G A PCDHGB6 Missense_Mutation p.D187N 0.20 tolerated(0.07) possibly_damaging(0.721) TCGA-DY-A1DF-01 5 149360763 149360763 G T SLC26A2 Missense_Mutation p.C536F 0.26 tolerated(0.09) benign(0.01) TCGA-DY-A1DF-01 5 156533905 156533905 C T HAVCR2 Missense_Mutation p.A43T 0.25 tolerated(0.48) benign(0.026) TCGA-DY-A1DF-01 5 17276220 17276220 G - BASP1 3'UTR 0.28 TCGA-DY-A1DF-01 6 152473216 152473216 G A SYNE1 Missense_Mutation p.R8064C 0.43 probably_damaging(0.996) TCGA-DY-A1DF-01 6 152722301 152722301 T C SYNE1 Missense_Mutation p.E2334G 0.22 benign(0.007) TCGA-DY-A1DF-01 6 160218385 160218385 G A MRPL18 Silent p.V102V 0.25 TCGA-DY-A1DF-01 6 26043657 26043657 C T HIST1H2BB Missense_Mutation p.E77K 0.08 deleterious_low_confidence(0.04) benign(0.442) TCGA-DY-A1DF-01 6 31785610 31785610 C G HSPA1A 3'UTR 0.10 TCGA-DY-A1DF-01 6 70048830 70048830 G A BAI3 Missense_Mutation p.G1071S 0.25 tolerated(0.61) probably_damaging(0.998) TCGA-DY-A1DF-01 6 75833803 75833803 C A COL12A1 Missense_Mutation p.R2244S 0.56 probably_damaging(0.998) TCGA-DY-A1DF-01 7 117375142 117375142 G A CTTNBP2 Missense_Mutation p.S1234F 0.30 deleterious(0.03) benign(0.016) TCGA-DY-A1DF-01 7 134127504 134127504 A C AKR1B1 Missense_Mutation p.D309E 0.10 tolerated(0.24) benign(0.003) TCGA-DY-A1DF-01 7 135406185 135406185 C T SLC13A4 Silent p.P62P 0.28 TCGA-DY-A1DF-01 7 142575018 142575018 G C TRPV6 Missense_Mutation p.H122D 0.13 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DF-01 7 149430494 149430494 C T KRBA1 Silent p.L816L 0.43 TCGA-DY-A1DF-01 7 151960154 151960155 - C KMT2C Frame_Shift_Ins p.F416Vfs*31 0.22 TCGA-DY-A1DF-01 7 38516554 38516554 G A AMPH Missense_Mutation p.R138C 0.33 deleterious(0) probably_damaging(1) TCGA-DY-A1DF-01 7 41729765 41729765 A C INHBA Missense_Mutation p.V255G 0.16 tolerated(0.06) possibly_damaging(0.735) TCGA-DY-A1DF-01 7 45956872 45956872 G A IGFBP3 Silent p.Y196Y 0.34 TCGA-DY-A1DF-01 7 4900243 4900243 C T PAPOLB Missense_Mutation p.R399Q 0.13 deleterious(0.03) benign(0.1) TCGA-DY-A1DF-01 7 55242488 55242488 C T EGFR Missense_Mutation p.P753L 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-DY-A1DF-01 7 80300462 80300462 A G CD36 Missense_Mutation p.I330V 0.19 tolerated(0.21) benign(0.075) TCGA-DY-A1DF-01 7 94059758 94059758 G A COL1A2 3'UTR 0.33 TCGA-DY-A1DF-01 8 122641375 122641375 C T HAS2 Missense_Mutation p.R69Q 0.48 deleterious(0.03) benign(0.033) TCGA-DY-A1DF-01 8 142505557 142505557 T C MROH5 Missense_Mutation p.M62V 0.42 tolerated(0.07) benign(0.003) TCGA-DY-A1DF-01 8 145618519 145618519 C T CPSF1 3'UTR 0.38 TCGA-DY-A1DF-01 8 26722336 26722336 C T ADRA1A Missense_Mutation p.V51I 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-DY-A1DF-01 8 3245155 3245155 G A CSMD1 Silent p.N881N 0.43 TCGA-DY-A1DF-01 8 49985379 49985379 C T C8orf22 5'UTR 0.47 TCGA-DY-A1DF-01 8 67511374 67511374 G A MYBL1 Missense_Mutation p.R68C 0.28 deleterious(0) probably_damaging(1) TCGA-DY-A1DF-01 8 73848485 73848485 G A KCNB2 Missense_Mutation p.V299M 0.48 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DF-01 8 85717027 85717027 C T RALYL Silent p.L132L 0.60 TCGA-DY-A1DF-01 8 89053801 89053801 C T MMP16 Missense_Mutation p.C571Y 0.53 deleterious(0) probably_damaging(0.986) TCGA-DY-A1DF-01 9 34490391 34490391 G C DNAI1 Missense_Mutation p.E176Q 0.25 tolerated(0.24) benign(0.04) TCGA-DY-A1DF-01 9 71398046 71398046 G A FAM122A 3'UTR 0.55 TCGA-DY-A1DF-01 9 73151436 73151436 T C TRPM3 Silent p.K1519K 0.20 TCGA-DY-A1DF-01 9 97062462 97062462 G C ZNF169 Missense_Mutation p.E208Q 0.57 tolerated(0.5) benign(0.019) TCGA-DY-A1DF-01 X 103349343 103349343 G T SLC25A53 Missense_Mutation p.Q200K 0.20 tolerated(1) benign(0.001) TCGA-DY-A1DF-01 X 106871844 106871844 G C PRPS1 5'UTR 0.39 TCGA-DY-A1DF-01 X 110463671 110463671 G A PAK3 Missense_Mutation p.R580H 0.49 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DY-A1DF-01 X 110653620 110653620 G A DCX Missense_Mutation p.L84F 0.55 deleterious_low_confidence(0) possibly_damaging(0.866) TCGA-DY-A1DF-01 X 119077346 119077346 G A NKAP Missense_Mutation p.R75C 0.16 tolerated(0.1) probably_damaging(0.995) TCGA-DY-A1DF-01 X 119210964 119210964 G A RHOXF2B Silent p.G123G 0.76 TCGA-DY-A1DF-01 X 119293210 119293210 C T RHOXF2 Silent p.G123G 0.21 TCGA-DY-A1DF-01 X 138813814 138813814 T A ATP11C Nonstop_Mutation p.*1133Lext*22 0.47 TCGA-DY-A1DF-01 X 148713274 148713274 T G TMEM185A 5'UTR 0.10 TCGA-DY-A1DF-01 X 151303091 151303091 C G MAGEA10 Missense_Mutation p.L334F 0.39 deleterious(0.02) benign(0.193) TCGA-DY-A1DF-01 X 152615708 152615708 C T ZNF275 3'UTR 0.56 TCGA-DY-A1DF-01 X 154743709 154743709 T C TMLHE Silent p.V192V 0.20 TCGA-DY-A1DF-01 X 17764155 17764155 T A SCML1 Silent p.S45S 0.38 TCGA-DY-A1DF-01 X 19379458 19379458 G A MAP3K15 Missense_Mutation p.R1286W 0.44 deleterious(0) probably_damaging(0.99) TCGA-DY-A1DF-01 X 2777919 2777919 G A GYG2 Missense_Mutation p.G248E 0.48 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DF-01 X 29973736 29973736 C T IL1RAPL1 Silent p.Y630Y 0.36 TCGA-DY-A1DF-01 X 30237240 30237240 C T MAGEB2 Silent p.I181I 0.55 TCGA-DY-A1DF-01 X 45017022 45017022 C T CXorf36 Missense_Mutation p.D204N 0.48 deleterious(0) benign(0.08) TCGA-DY-A1DF-01 X 46951191 46951191 G A RGN Missense_Mutation p.R226H 0.45 tolerated(0.09) benign(0.326) TCGA-DY-A1DF-01 X 53616547 53616547 G C HUWE1 Missense_Mutation p.A1474G 0.47 benign(0.316) TCGA-DY-A1DF-01 X 63412110 63412110 G A AMER1 Nonsense_Mutation p.R353* 0.40 TCGA-DY-A1DF-01 X 70836213 70836213 C G CXCR3 3'UTR 0.48 TCGA-DY-A1DF-01 X 73963760 73963760 T G KIAA2022 Missense_Mutation p.K211T 0.22 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DG-01 10 114905790 114905790 C T TCF7L2 Missense_Mutation p.P270L 0.61 deleterious(0) probably_damaging(1) TCGA-DY-A1DG-01 10 118434446 118434446 C T HSPA12A Missense_Mutation p.R625H 0.34 tolerated(0.61) benign(0.027) TCGA-DY-A1DG-01 10 1230859 1230859 C - ADARB2 Frame_Shift_Del p.G662Afs*21 0.43 TCGA-DY-A1DG-01 10 123970169 123970169 C T TACC2 Missense_Mutation p.P2077S 0.23 possibly_damaging(0.656) TCGA-DY-A1DG-01 10 17686261 17686261 G T STAM 5'UTR 0.09 TCGA-DY-A1DG-01 10 27493474 27493474 G T ACBD5 Missense_Mutation p.P487Q 0.33 deleterious(0) probably_damaging(0.971) TCGA-DY-A1DG-01 10 48371226 48371226 A C ZNF488 Missense_Mutation p.T232P 0.15 tolerated(0.11) benign(0.065) TCGA-DY-A1DG-01 10 48372208 48372208 C T ZNF488 3'UTR 0.25 TCGA-DY-A1DG-01 10 48390677 48390677 C T RBP3 Silent p.P67P 0.24 TCGA-DY-A1DG-01 10 50819132 50819132 C A SLC18A3 Missense_Mutation p.P116T 0.30 tolerated(0.54) benign(0.038) TCGA-DY-A1DG-01 10 63852513 63852513 T C ARID5B Silent p.A1097A 0.38 TCGA-DY-A1DG-01 10 72434418 72434418 C T ADAMTS14 Silent p.A63A 0.10 TCGA-DY-A1DG-01 10 85992226 85992226 G A LRIT1 Silent p.S443S 0.29 TCGA-DY-A1DG-01 10 87484365 87484365 C T GRID1 Silent p.K534K 0.30 TCGA-DY-A1DG-01 11 111404521 111404521 A G C11orf88 Silent p.E157E 0.20 TCGA-DY-A1DG-01 11 113270161 113270161 T C ANKK1 Silent p.H490H 0.10 TCGA-DY-A1DG-01 11 122678801 122678801 G A UBASH3B Missense_Mutation p.A577T 0.11 deleterious(0.04) probably_damaging(0.973) TCGA-DY-A1DG-01 11 122774668 122774668 G A C11orf63 Missense_Mutation p.R127H 0.20 deleterious(0) probably_damaging(0.989) TCGA-DY-A1DG-01 11 123909698 123909698 G C OR10G7 Missense_Mutation p.A4G 0.42 tolerated(0.33) benign(0) TCGA-DY-A1DG-01 11 35219752 35219752 G A CD44 Missense_Mutation p.G294E 0.19 deleterious(0) probably_damaging(1) TCGA-DY-A1DG-01 11 36598740 36598740 T G RAG1 3'UTR 0.14 TCGA-DY-A1DG-01 11 47437075 47437075 A C SLC39A13 3'UTR 0.19 TCGA-DY-A1DG-01 11 5373545 5373545 G A OR51B6 Missense_Mutation p.V270I 0.05 tolerated(0.17) benign(0.258) TCGA-DY-A1DG-01 11 56258344 56258344 C A OR5M8 Missense_Mutation p.C168F 0.28 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DG-01 11 60666669 60666669 G A PRPF19 Silent p.L312L 0.94 TCGA-DY-A1DG-01 11 61278327 61278327 C T LRRC10B 3'UTR 0.37 TCGA-DY-A1DG-01 11 6232882 6232882 C A FAM160A2 Missense_Mutation p.V939F 0.19 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DG-01 11 62475816 62475816 C T GNG3 Missense_Mutation p.R17C 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-DY-A1DG-01 11 71238483 71238483 G A KRTAP5-7 Missense_Mutation p.C46Y 0.27 deleterious_low_confidence(0) unknown(0) TCGA-DY-A1DG-01 11 77602469 77602469 C G INTS4 Missense_Mutation p.E830Q 0.11 tolerated(0.18) possibly_damaging(0.868) TCGA-DY-A1DG-01 12 113355473 113355473 G A OAS1 Missense_Mutation p.D336N 0.20 tolerated(0.19) benign(0.116) TCGA-DY-A1DG-01 12 120111862 120111862 G T PRKAB1 Missense_Mutation p.E139D 0.25 tolerated(0.19) benign(0.276) TCGA-DY-A1DG-01 12 124233316 124233316 G A ATP6V0A2 Missense_Mutation p.G640D 0.18 tolerated(0.29) benign(0.34) TCGA-DY-A1DG-01 12 129569055 129569055 C T TMEM132D Missense_Mutation p.V546I 0.30 tolerated(0.33) benign(0.013) TCGA-DY-A1DG-01 12 28605481 28605481 C T CCDC91 Missense_Mutation p.A332V 0.36 tolerated(1) benign(0.001) TCGA-DY-A1DG-01 12 29629219 29629219 T C OVCH1 Missense_Mutation p.D464G 0.35 deleterious(0.04) possibly_damaging(0.67) TCGA-DY-A1DG-01 12 6673077 6673077 C G NOP2 Missense_Mutation p.K203N 0.42 deleterious(0.01) possibly_damaging(0.703) TCGA-DY-A1DG-01 12 78522503 78522503 G A NAV3 Missense_Mutation p.R1433Q 0.67 tolerated(1) probably_damaging(0.999) TCGA-DY-A1DG-01 13 113714934 113714934 G A MCF2L Missense_Mutation p.V133I 0.12 tolerated(0.11) benign(0.244) TCGA-DY-A1DG-01 13 20716390 20716390 C T GJA3 Silent p.A346A 0.37 TCGA-DY-A1DG-01 13 36348573 36348573 C T DCLK1 3'UTR 0.30 TCGA-DY-A1DG-01 13 86370292 86370292 G A SLITRK6 Missense_Mutation p.H118Y 0.19 deleterious(0.04) probably_damaging(0.997) TCGA-DY-A1DG-01 13 99098444 99098444 C G FARP1 Missense_Mutation p.F963L 0.29 deleterious(0) probably_damaging(0.912) TCGA-DY-A1DG-01 14 105957432 105957432 T A C14orf80 5'Flank 0.88 TCGA-DY-A1DG-01 14 23793419 23793419 G T PABPN1 Missense_Mutation p.A268S 0.88 tolerated(0.12) benign(0.074) TCGA-DY-A1DG-01 14 32560989 32561009 GCAGATTTCCAGTTATGTTTT - ARHGAP5 In_Frame_Del p.A372_F378del 0.31 TCGA-DY-A1DG-01 15 25620840 25620840 C T UBE3A Missense_Mutation p.A48T 0.42 tolerated(0.53) benign(0.001) TCGA-DY-A1DG-01 15 33941367 33941367 A G RYR3 Missense_Mutation p.K1358R 0.10 benign(0.102) TCGA-DY-A1DG-01 15 48764825 48764825 C A FBN1 Missense_Mutation p.C1420F 0.13 probably_damaging(0.999) TCGA-DY-A1DG-01 15 50273413 50273414 - GAG ATP8B4 In_Frame_Ins p.T275_L276insP 0.28 TCGA-DY-A1DG-01 15 53049845 53049845 G A ONECUT1 Silent p.N435N 0.33 TCGA-DY-A1DG-01 15 63335952 63335952 G A TPM1 Intron 0.22 TCGA-DY-A1DG-01 15 66845426 66845426 C T LCTL Missense_Mutation p.D365N 0.49 deleterious(0) probably_damaging(1) TCGA-DY-A1DG-01 15 72106357 72106357 G A CTD-2524L6.3 5'Flank 0.50 TCGA-DY-A1DG-01 15 77908090 77908090 G A LINGO1 Silent p.R53R 0.22 TCGA-DY-A1DG-01 15 79058551 79058551 C T ADAMTS7 Silent p.P1234P 0.36 TCGA-DY-A1DG-01 15 90766959 90766959 T C SEMA4B Missense_Mutation p.F344L 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-DY-A1DG-01 15 92988002 92988002 C T ST8SIA2 Missense_Mutation p.R229W 0.32 probably_damaging(1) TCGA-DY-A1DG-01 16 11097081 11097081 G A CLEC16A Missense_Mutation p.E408K 0.61 tolerated(0.15) benign(0.043) TCGA-DY-A1DG-01 16 20357567 20357567 C T UMOD Missense_Mutation p.D355N 0.26 tolerated(0.17) benign(0.006) TCGA-DY-A1DG-01 16 31213154 31213154 A C PYCARD Missense_Mutation p.F114V 0.18 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DG-01 16 532596 532596 C T RAB11FIP3 Silent p.D325D 0.31 TCGA-DY-A1DG-01 16 55363057 55363057 C T IRX6 Silent p.A389A 0.21 TCGA-DY-A1DG-01 16 69143929 69143929 A G HAS3 Missense_Mutation p.I211V 0.39 tolerated(1) benign(0.003) TCGA-DY-A1DG-01 16 71610250 71610250 G A TAT Silent p.N23N 0.16 TCGA-DY-A1DG-01 16 81134863 81134863 A T GCSH 5'Flank 0.11 TCGA-DY-A1DG-01 16 88500123 88500123 G A ZNF469 Missense_Mutation p.R2054Q 0.50 benign(0.003) TCGA-DY-A1DG-01 16 88594495 88594495 C T ZFPM1 Silent p.S187S 0.16 TCGA-DY-A1DG-01 17 18023659 18023659 C T MYO15A Silent p.D515D 0.50 TCGA-DY-A1DG-01 17 18682054 18682054 G C FBXW10 Missense_Mutation p.D868H 0.39 deleterious(0.01) possibly_damaging(0.86) TCGA-DY-A1DG-01 17 27946079 27946079 T A CORO6 Silent p.A150A 0.17 TCGA-DY-A1DG-01 17 30611721 30611721 G A RHBDL3 Missense_Mutation p.R60Q 0.49 tolerated(0.53) benign(0.036) TCGA-DY-A1DG-01 17 37985721 37985721 C A IKZF3 Missense_Mutation p.D28Y 0.42 deleterious(0) possibly_damaging(0.775) TCGA-DY-A1DG-01 17 38856477 38856477 C A KRT24 Missense_Mutation p.K338N 0.47 deleterious(0) probably_damaging(0.96) TCGA-DY-A1DG-01 17 43912051 43912051 G A CRHR1 Missense_Mutation p.R419Q 0.42 deleterious(0.02) probably_damaging(0.98) TCGA-DY-A1DG-01 17 48687292 48687292 G A CACNA1G Silent p.A1585A 0.53 TCGA-DY-A1DG-01 17 61712089 61712089 C A MAP3K3 Missense_Mutation p.S49R 0.08 tolerated_low_confidence(0.59) benign(0.24) TCGA-DY-A1DG-01 17 61988350 61988350 G C CSHL1 Intron 0.21 TCGA-DY-A1DG-01 17 74922750 74922750 A G MGAT5B Missense_Mutation p.H421R 0.09 tolerated(0.22) benign(0.073) TCGA-DY-A1DG-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 1.00 deleterious(0) probably_damaging(0.997) TCGA-DY-A1DG-01 17 7978912 7978912 C A ALOX12B Splice_Site p.X552_splice 0.56 TCGA-DY-A1DG-01 18 32954210 32954210 G T ZNF396 Nonsense_Mutation p.S16* 0.93 TCGA-DY-A1DG-01 18 9254261 9254261 C T ANKRD12 Silent p.D332D 0.52 TCGA-DY-A1DG-01 19 22941608 22941608 G T ZNF99 Missense_Mutation p.P368H 0.56 deleterious(0.02) probably_damaging(0.991) TCGA-DY-A1DG-01 19 38861248 38861248 C T CATSPERG Missense_Mutation p.T1099M 0.88 tolerated(0.14) possibly_damaging(0.897) TCGA-DY-A1DG-01 19 39008158 39008158 C A RYR1 Missense_Mutation p.P3282H 0.98 benign(0.192) TCGA-DY-A1DG-01 19 43233350 43233350 C T PSG3 Missense_Mutation p.G390R 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-DY-A1DG-01 19 45162043 45162043 G A PVR Missense_Mutation p.R342H 0.29 tolerated(0.54) benign(0) TCGA-DY-A1DG-01 19 47228182 47228182 G A STRN4 Silent p.G499G 0.95 TCGA-DY-A1DG-01 19 49363681 49363681 G A PLEKHA4 Silent p.A134A 0.24 TCGA-DY-A1DG-01 19 52034594 52034594 C T SIGLEC6 Missense_Mutation p.E83K 0.33 tolerated(0.19) benign(0.004) TCGA-DY-A1DG-01 19 52376081 52376081 C G ZNF577 Missense_Mutation p.E388Q 0.07 deleterious(0.02) benign(0.024) TCGA-DY-A1DG-01 19 55493981 55493981 C T NLRP2 Silent p.C305C 0.87 TCGA-DY-A1DG-01 19 56041622 56041622 G A SBK2 Silent p.H175H 0.85 TCGA-DY-A1DG-01 19 56953450 56953450 C G ZNF667 Missense_Mutation p.G305A 0.27 deleterious(0.05) benign(0.012) TCGA-DY-A1DG-01 19 57325432 57325432 C A PEG3 Missense_Mutation p.D1460Y 0.06 deleterious(0) probably_damaging(1) TCGA-DY-A1DG-01 19 57985692 57985692 A T ZNF772 Silent p.T140T 0.27 TCGA-DY-A1DG-01 19 9406961 9406961 G A ZNF699 Silent p.S373S 0.91 TCGA-DY-A1DG-01 19 984346 984346 A G WDR18 5'UTR 0.12 TCGA-DY-A1DG-01 1 11562804 11562804 A T PTCHD2 Missense_Mutation p.N389I 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-DY-A1DG-01 1 11718862 11718862 G A FBXO44 Silent p.A186A 0.44 TCGA-DY-A1DG-01 1 120462032 120462032 C T NOTCH2 Missense_Mutation p.R1895H 0.29 deleterious(0) benign(0.05) TCGA-DY-A1DG-01 1 147092651 147092651 C T BCL9 Missense_Mutation p.A897V 0.29 deleterious(0.03) benign(0.102) TCGA-DY-A1DG-01 1 151137880 151137880 G A LYSMD1 5'UTR 0.67 TCGA-DY-A1DG-01 1 153005071 153005071 C A SPRR1B Missense_Mutation p.Q84K 0.29 deleterious(0.01) probably_damaging(0.959) TCGA-DY-A1DG-01 1 156526481 156526481 G A IQGAP3 Silent p.L378L 0.30 TCGA-DY-A1DG-01 1 15863099 15863099 G A DNAJC16 Missense_Mutation p.D122N 0.19 tolerated(0.08) benign(0.388) TCGA-DY-A1DG-01 1 159799725 159799725 C A SLAMF8 Missense_Mutation p.A37E 0.71 deleterious(0.01) probably_damaging(0.982) TCGA-DY-A1DG-01 1 161496609 161496609 C G HSPA6 3'UTR 0.23 TCGA-DY-A1DG-01 1 176845695 176845695 C T ASTN1 Silent p.V1147V 0.24 TCGA-DY-A1DG-01 1 181021646 181021646 G C MR1 Missense_Mutation p.E294Q 0.34 deleterious(0.04) possibly_damaging(0.776) TCGA-DY-A1DG-01 1 182025318 182025318 C T ZNF648 3'UTR 0.40 TCGA-DY-A1DG-01 1 183513620 183513620 C T SMG7 Missense_Mutation p.P613S 0.62 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DY-A1DG-01 1 196758794 196758794 C T CFHR3 Intron 0.07 TCGA-DY-A1DG-01 1 197019902 197019902 C G F13B Missense_Mutation p.D555H 0.30 deleterious(0) probably_damaging(0.948) TCGA-DY-A1DG-01 1 24120368 24120368 G A LYPLA2 Silent p.L81L 0.25 TCGA-DY-A1DG-01 1 3683865 3683865 C T CCDC27 Silent p.V533V 0.32 TCGA-DY-A1DG-01 1 42621220 42621220 G A GUCA2B Missense_Mutation p.D98N 0.23 deleterious(0.02) possibly_damaging(0.462) TCGA-DY-A1DG-01 1 45228107 45228107 C T KIF2C Missense_Mutation p.A614V 0.32 tolerated(0.45) benign(0.002) TCGA-DY-A1DG-01 1 45808078 45808078 C A TOE1 Nonsense_Mutation p.S172* 0.30 TCGA-DY-A1DG-01 1 62321734 62321734 G A INADL Silent p.V715V 0.49 TCGA-DY-A1DG-01 1 66081844 66081844 A T LEPR Missense_Mutation p.I717F 0.50 tolerated(0.2) benign(0.022) TCGA-DY-A1DG-01 1 70226013 70226013 T A LRRC7 Missense_Mutation p.F42L 0.30 tolerated(0.07) probably_damaging(0.958) TCGA-DY-A1DG-01 20 20030053 20030053 T C CRNKL1 Missense_Mutation p.K237R 0.18 tolerated(0.94) benign(0.006) TCGA-DY-A1DG-01 20 21209692 21209692 T C PLK1S1 RNA 0.08 TCGA-DY-A1DG-01 20 39977258 39977258 G A LPIN3 Splice_Site p.X97_splice 0.28 TCGA-DY-A1DG-01 20 45192160 45192160 G T SLC13A3 Missense_Mutation p.L509M 0.18 deleterious(0.01) possibly_damaging(0.724) TCGA-DY-A1DG-01 21 32491142 32491142 G A TIAM1 3'UTR 0.54 TCGA-DY-A1DG-01 21 34697331 34697331 G T IFNAR1 5'UTR 0.40 TCGA-DY-A1DG-01 21 34721523 34721523 C G IFNAR1 Silent p.L305L 0.46 TCGA-DY-A1DG-01 21 35468950 35468950 T A SLC5A3 Missense_Mutation p.L485M 0.31 tolerated(1) benign(0.223) TCGA-DY-A1DG-01 22 18769245 18769245 C T GGT3P RNA 0.44 TCGA-DY-A1DG-01 22 19511817 19511817 C T CLDN5 Missense_Mutation p.G73S 0.50 tolerated_low_confidence(0.89) benign(0) TCGA-DY-A1DG-01 22 26176132 26176132 C T MYO18B Silent p.N726N 1.00 TCGA-DY-A1DG-01 22 31663887 31663887 C T LIMK2 Silent p.R397R 0.74 TCGA-DY-A1DG-01 2 106497813 106497813 G A NCK2 Missense_Mutation p.A86T 0.54 tolerated(0.58) benign(0.003) TCGA-DY-A1DG-01 2 133540011 133540011 G A NCKAP5 Missense_Mutation p.A1458V 0.35 tolerated(0.31) benign(0.002) TCGA-DY-A1DG-01 2 141116394 141116394 A T LRP1B Nonsense_Mutation p.C3751* 0.25 TCGA-DY-A1DG-01 2 144764871 144764871 C T GTDC1 Silent p.S251S 0.30 TCGA-DY-A1DG-01 2 152520231 152520231 G A NEB Missense_Mutation p.S1865F 0.05 possibly_damaging(0.884) TCGA-DY-A1DG-01 2 168099854 168099854 T C XIRP2 Missense_Mutation p.V651A 0.24 probably_damaging(0.999) TCGA-DY-A1DG-01 2 174945927 174945927 A G OLA1 Missense_Mutation p.Y307H 0.27 tolerated(0.33) possibly_damaging(0.89) TCGA-DY-A1DG-01 2 178098832 178098832 G A NFE2L2 Silent p.F71F 0.52 TCGA-DY-A1DG-01 2 179315816 179315816 C T PRKRA 5'UTR 0.20 TCGA-DY-A1DG-01 2 179434540 179434540 T C TTN Missense_Mutation p.Y25440C 0.23 TCGA-DY-A1DG-01 2 212615366 212615366 G C ERBB4 Missense_Mutation p.T207S 0.11 tolerated(0.58) benign(0.001) TCGA-DY-A1DG-01 2 220037795 220037795 G A CNPPD1 Missense_Mutation p.S249L 0.25 deleterious(0) possibly_damaging(0.88) TCGA-DY-A1DG-01 2 220246082 220246082 G T DNPEP Missense_Mutation p.A405D 0.07 deleterious(0) probably_damaging(0.995) TCGA-DY-A1DG-01 2 220413897 220413897 C T TMEM198 Missense_Mutation p.R256C 0.64 deleterious(0) possibly_damaging(0.689) TCGA-DY-A1DG-01 2 48873741 48873741 C G STON1-GTF2A1L Missense_Mutation p.L884V 0.24 tolerated(0.38) benign(0.058) TCGA-DY-A1DG-01 2 5836505 5836505 G A SOX11 3'UTR 0.51 TCGA-DY-A1DG-01 2 63714587 63714587 G T WDPCP Missense_Mutation p.P68T 0.18 tolerated(0.22) benign(0.004) TCGA-DY-A1DG-01 2 71058201 71058201 A C CD207 Missense_Mutation p.Y323D 0.32 deleterious(0.01) probably_damaging(0.956) TCGA-DY-A1DG-01 2 71159919 71159919 G A VAX2 Missense_Mutation p.R153H 0.26 deleterious(0.02) possibly_damaging(0.88) TCGA-DY-A1DG-01 2 71801460 71801460 A T DYSF Nonsense_Mutation p.K1121* 0.19 TCGA-DY-A1DG-01 2 73676445 73676445 G T ALMS1 Missense_Mutation p.A930S 0.22 possibly_damaging(0.595) TCGA-DY-A1DG-01 2 80874935 80874935 C A CTNNA2 Missense_Mutation p.Q886K 0.29 tolerated(0.16) benign(0.03) TCGA-DY-A1DG-01 2 89292220 89292220 G A IGKV1-8 Missense_Mutation p.A18V 0.27 tolerated(0.25) benign(0.007) TCGA-DY-A1DG-01 3 111899499 111899499 T C SLC9C1 Missense_Mutation p.K887R 0.32 tolerated(0.39) benign(0.022) TCGA-DY-A1DG-01 3 124103827 124103827 G A KALRN Missense_Mutation p.E634K 0.33 deleterious(0) unknown(0) TCGA-DY-A1DG-01 3 131261586 131261586 C T CPNE4 Missense_Mutation p.D452N 0.12 tolerated(0.06) probably_damaging(0.997) TCGA-DY-A1DG-01 3 133583452 133583452 G A RAB6B Silent p.Y35Y 0.27 TCGA-DY-A1DG-01 3 138724643 138724643 G A PRR23A Silent p.Y156Y 0.10 TCGA-DY-A1DG-01 3 149220594 149220594 T A TM4SF4 3'UTR 0.26 TCGA-DY-A1DG-01 3 20017197 20017197 T A RAB5A Missense_Mutation p.Y90N 0.08 deleterious(0) probably_damaging(1) TCGA-DY-A1DG-01 3 37337662 37337662 G A GOLGA4 Missense_Mutation p.E278K 0.10 benign(0.018) TCGA-DY-A1DG-01 3 49146603 49146604 - C USP19 Frame_Shift_Ins p.Q1350Afs*6 0.31 TCGA-DY-A1DG-01 3 53855715 53855715 T C CHDH Missense_Mutation p.D315G 0.09 tolerated(0.35) benign(0.375) TCGA-DY-A1DG-01 3 62499312 62499312 C T CADPS Intron 0.61 TCGA-DY-A1DG-01 3 9781308 9781308 T A BRPF1 Missense_Mutation p.F409I 0.15 deleterious(0) probably_damaging(0.99) TCGA-DY-A1DG-01 3 97851727 97851727 C A OR5H1 Silent p.L62L 0.25 TCGA-DY-A1DG-01 4 109588408 109588408 A G OSTC Missense_Mutation p.I171V 0.04 deleterious_low_confidence(0) benign(0) TCGA-DY-A1DG-01 4 120243309 120243309 G A FABP2 5'UTR 0.38 TCGA-DY-A1DG-01 4 16002243 16002243 C A PROM1 Splice_Site p.X485_splice 0.18 TCGA-DY-A1DG-01 4 4228435 4228435 C T OTOP1 Missense_Mutation p.V53I 0.20 tolerated_low_confidence(0.28) benign(0.057) TCGA-DY-A1DG-01 4 44680652 44680652 G C GUF1 Missense_Mutation p.V5L 0.19 tolerated_low_confidence(0.58) benign(0.002) TCGA-DY-A1DG-01 4 48037599 48037599 A G NIPAL1 Missense_Mutation p.I215V 0.46 tolerated(0.26) benign(0.014) TCGA-DY-A1DG-01 4 62936336 62936336 C A LPHN3 Missense_Mutation p.H1374N 0.26 tolerated(1) benign(0.001) TCGA-DY-A1DG-01 4 68255 68255 G C Z95704.1 3'Flank 0.36 TCGA-DY-A1DG-01 4 71064306 71064306 A G ODAM Missense_Mutation p.Y129C 0.57 tolerated(0.12) probably_damaging(0.966) TCGA-DY-A1DG-01 4 84376732 84376732 C T HELQ Missense_Mutation p.E39K 0.25 deleterious_low_confidence(0.03) benign(0.053) TCGA-DY-A1DG-01 5 1038485 1038485 C G NKD2 Silent p.S451S 0.30 TCGA-DY-A1DG-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.88 TCGA-DY-A1DG-01 5 137729028 137729028 C T KDM3B Missense_Mutation p.S933F 0.27 deleterious(0) probably_damaging(0.921) TCGA-DY-A1DG-01 5 13829656 13829656 G A DNAH5 Missense_Mutation p.T2136M 0.27 probably_damaging(0.938) TCGA-DY-A1DG-01 5 140215402 140215402 G A PCDHA7 Silent p.S478S 0.91 TCGA-DY-A1DG-01 5 140222316 140222316 G A PCDHA8 Silent p.P470P 0.95 TCGA-DY-A1DG-01 5 140263464 140263464 G A PCDHA13 Silent p.A537A 0.42 TCGA-DY-A1DG-01 5 179192661 179192661 A G MAML1 Missense_Mutation p.K217R 0.08 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DG-01 5 179291016 179291016 C G TBC1D9B Missense_Mutation p.G1062A 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-DY-A1DG-01 5 32356011 32356011 T A ZFR Missense_Mutation p.H1027L 0.27 deleterious(0) unknown(0) TCGA-DY-A1DG-01 5 36184046 36184046 A G SKP2 3'UTR 0.09 TCGA-DY-A1DG-01 6 105297107 105297107 T A HACE1 Missense_Mutation p.E79V 0.22 deleterious(0) probably_damaging(0.958) TCGA-DY-A1DG-01 6 114277793 114277793 G A HDAC2 Silent p.G116G 0.18 TCGA-DY-A1DG-01 6 14133902 14133902 A T CD83 Missense_Mutation p.E135D 0.29 tolerated(0.45) possibly_damaging(0.769) TCGA-DY-A1DG-01 6 161152156 161152156 G A PLG Missense_Mutation p.V444I 0.37 deleterious(0.04) possibly_damaging(0.603) TCGA-DY-A1DG-01 6 31085067 31085067 C A CDSN Nonsense_Mutation p.G109* 0.17 TCGA-DY-A1DG-01 6 31132578 31132580 GTT - POU5F1 In_Frame_Del p.Q294del 0.15 TCGA-DY-A1DG-01 6 31592061 31592061 C T PRRC2A Missense_Mutation p.P105L 0.17 unknown(0) TCGA-DY-A1DG-01 6 49754992 49754992 C T PGK2 5'UTR 0.36 TCGA-DY-A1DG-01 7 120629703 120629703 C T CPED1 Missense_Mutation p.R10C 0.35 deleterious(0.04) unknown(0) TCGA-DY-A1DG-01 7 124404321 124404321 C T GPR37 Missense_Mutation p.R237Q 0.38 tolerated(0.16) benign(0.002) TCGA-DY-A1DG-01 7 130353824 130353824 A G TSGA13 3'UTR 0.08 TCGA-DY-A1DG-01 7 150698638 150698638 C A NOS3 Missense_Mutation p.P479T 0.31 deleterious(0) possibly_damaging(0.689) TCGA-DY-A1DG-01 7 23296588 23296588 G A GPNMB Missense_Mutation p.G149S 0.31 tolerated(1) benign(0.002) TCGA-DY-A1DG-01 7 2578266 2578266 C T BRAT1 Missense_Mutation p.V635M 0.25 tolerated(0.11) benign(0.066) TCGA-DY-A1DG-01 7 38725420 38725420 G A FAM183B Silent p.P62P 0.30 TCGA-DY-A1DG-01 7 4854989 4854989 C T RADIL Missense_Mutation p.G687R 0.10 deleterious(0) probably_damaging(0.957) TCGA-DY-A1DG-01 7 73008526 73008526 G A MLXIPL Intron 0.38 TCGA-DY-A1DG-01 7 86986890 86986890 G A CROT Silent p.T61T 0.33 TCGA-DY-A1DG-01 7 90043706 90043706 C T CLDN12 3'UTR 0.09 TCGA-DY-A1DG-01 7 92848754 92848754 C T HEPACAM2 Silent p.S30S 0.65 TCGA-DY-A1DG-01 7 98552797 98552797 C T TRRAP Missense_Mutation p.P1929L 0.31 probably_damaging(1) TCGA-DY-A1DG-01 7 99697372 99697372 C T MCM7 Missense_Mutation p.R39Q 0.39 tolerated(0.55) benign(0.001) TCGA-DY-A1DG-01 8 10584033 10584033 G A SOX7 Missense_Mutation p.R180C 0.37 deleterious(0) probably_damaging(0.995) TCGA-DY-A1DG-01 8 135521987 135521987 G A ZFAT Nonsense_Mutation p.R1123* 0.74 TCGA-DY-A1DG-01 8 31004912 31004912 G T WRN Missense_Mutation p.R1164S 0.06 deleterious(0) probably_damaging(0.999) TCGA-DY-A1DG-01 8 42611803 42611803 G A CHRNA6 Missense_Mutation p.T180M 0.31 deleterious(0) probably_damaging(0.986) TCGA-DY-A1DG-01 8 62415977 62415977 C T ASPH Missense_Mutation p.V740M 0.41 deleterious(0) probably_damaging(0.998) TCGA-DY-A1DG-01 8 70982042 70982042 C T PRDM14 Silent p.P18P 0.33 TCGA-DY-A1DG-01 9 111624640 111624640 C A ACTL7A Missense_Mutation p.P13H 0.47 tolerated_low_confidence(0.05) possibly_damaging(0.718) TCGA-DY-A1DG-01 9 131389742 131389742 C T SPTAN1 Silent p.H2218H 0.30 TCGA-DY-A1DG-01 9 134072982 134072982 C T NUP214 Silent p.G1367G 0.37 TCGA-DY-A1DG-01 9 32631469 32631469 G A TAF1L Missense_Mutation p.P1370L 0.32 deleterious(0.05) possibly_damaging(0.642) TCGA-DY-A1DG-01 9 32635569 32635569 G A TAF1L Silent p.P3P 0.42 TCGA-DY-A1DG-01 9 35825636 35825636 C T FAM221B Missense_Mutation p.E175K 0.30 tolerated(0.1) benign(0.133) TCGA-DY-A1DG-01 9 79320992 79320992 G A PRUNE2 Silent p.A2066A 0.21 TCGA-DY-A1DG-01 9 79461456 79461456 G A PRUNE2 Silent p.T161T 0.26 TCGA-DY-A1DG-01 9 8484163 8484163 C T PTPRD Missense_Mutation p.M1123I 0.28 tolerated(0.42) possibly_damaging(0.795) TCGA-DY-A1DG-01 X 1407737 1407737 G A CSF2RA Silent p.T143T 0.14 TCGA-DY-A1DG-01 X 142718465 142718465 G T SLITRK4 Missense_Mutation p.L154I 0.97 deleterious(0.01) probably_damaging(0.994) TCGA-DY-A1DG-01 X 1554645 1554645 C T ASMTL Missense_Mutation p.G94R 0.94 deleterious(0.02) probably_damaging(0.915) TCGA-DY-A1DG-01 X 49022416 49022416 C T MAGIX Missense_Mutation p.P228L 0.98 tolerated(0.78) benign(0.002) TCGA-DY-A1DG-01 X 57474964 57474964 T A FAAH2 Silent p.A412A 0.40 TCGA-DY-A1DG-01 X 57474965 57474965 T A FAAH2 Missense_Mutation p.L413M 0.39 tolerated(0.22) possibly_damaging(0.525) TCGA-DY-A1DG-01 X 69262938 69262938 G A AWAT2 Missense_Mutation p.R210C 0.48 deleterious(0.01) probably_damaging(0.993) TCGA-DY-A1DG-01 X 71350067 71350067 G T RGAG4 Missense_Mutation p.P442T 0.45 tolerated_low_confidence(0.46) unknown(0) TCGA-DY-A1DG-01 X 71359119 71359119 G T NHSL2 Missense_Mutation p.S574I 0.95 deleterious(0) probably_damaging(0.999) TCGA-DY-A1H8-01 10 118101602 118101602 A G CCDC172 Missense_Mutation p.T113A 0.26 tolerated(0.11) benign(0.037) TCGA-DY-A1H8-01 10 127504770 127504770 C A UROS Missense_Mutation p.L41F 0.40 tolerated(0.07) benign(0.011) TCGA-DY-A1H8-01 10 50339903 50339903 C T FAM170B Missense_Mutation p.G203R 0.47 deleterious(0) probably_damaging(0.993) TCGA-DY-A1H8-01 10 72462145 72462145 C T ADAMTS14 Silent p.S200S 0.47 TCGA-DY-A1H8-01 10 89692958 89692958 G T PTEN Missense_Mutation p.A148S 0.40 deleterious(0.02) benign(0.402) TCGA-DY-A1H8-01 10 93222100 93222100 T C HECTD2 Intron 0.50 TCGA-DY-A1H8-01 11 100922294 100922294 G A PGR Nonsense_Mutation p.R740* 0.34 TCGA-DY-A1H8-01 11 19204129 19204129 A G CSRP3 3'UTR 0.09 TCGA-DY-A1H8-01 11 47494729 47494729 T C CELF1 Missense_Mutation p.Q441R 0.11 tolerated(0.39) possibly_damaging(0.801) TCGA-DY-A1H8-01 11 55681187 55681187 C T OR5W2 Missense_Mutation p.S291N 0.42 deleterious(0) possibly_damaging(0.877) TCGA-DY-A1H8-01 11 55681277 55681277 C T OR5W2 Missense_Mutation p.R261Q 0.38 tolerated(0.09) benign(0.23) TCGA-DY-A1H8-01 11 67260480 67260480 G A PITPNM1 Silent p.Y1132Y 0.51 TCGA-DY-A1H8-01 11 78383215 78383215 T C TENM4 Missense_Mutation p.T1886A 0.49 deleterious(0.01) possibly_damaging(0.643) TCGA-DY-A1H8-01 11 88338110 88338110 A C GRM5 Missense_Mutation p.H390Q 0.55 tolerated(0.58) benign(0.005) TCGA-DY-A1H8-01 12 103232978 103232978 C A PAH Missense_Mutation p.C445F 0.52 tolerated(0.05) benign(0.158) TCGA-DY-A1H8-01 12 108634180 108634180 G A WSCD2 Missense_Mutation p.E402K 0.68 deleterious(0.01) benign(0.322) TCGA-DY-A1H8-01 12 108686005 108686005 G C CMKLR1 Missense_Mutation p.C245W 0.30 tolerated(0.18) possibly_damaging(0.657) TCGA-DY-A1H8-01 12 108686006 108686006 C A CMKLR1 Missense_Mutation p.C245F 0.29 tolerated(0.78) benign(0.004) TCGA-DY-A1H8-01 12 119419797 119419797 C T SRRM4 Missense_Mutation p.T37M 0.34 deleterious_low_confidence(0) unknown(0) TCGA-DY-A1H8-01 12 120602182 120602182 G A GCN1L1 Silent p.H602H 0.29 TCGA-DY-A1H8-01 12 122691535 122691535 T C B3GNT4 Missense_Mutation p.V246A 0.70 deleterious(0.04) possibly_damaging(0.737) TCGA-DY-A1H8-01 12 132445290 132445290 C T EP400 Silent p.F42F 0.30 TCGA-DY-A1H8-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.62 deleterious(0.04) probably_damaging(0.993) TCGA-DY-A1H8-01 12 27933702 27933702 G T KLHL42 Nonsense_Mutation p.E147* 0.31 TCGA-DY-A1H8-01 12 97147665 97147665 T G C12orf55 Missense_Mutation p.L2610R 0.30 deleterious(0) benign(0.004) TCGA-DY-A1H8-01 13 111102776 111102776 G C COL4A2 Silent p.G438G 0.52 TCGA-DY-A1H8-01 13 27241676 27241677 - A WASF3 Frame_Shift_Ins p.A100Sfs*20 0.38 TCGA-DY-A1H8-01 13 36049188 36049188 A G MAB21L1 3'UTR 0.29 TCGA-DY-A1H8-01 13 79896553 79896553 C T RBM26 Silent p.L928L 0.33 TCGA-DY-A1H8-01 14 101492406 101492406 C T MIR758 RNA 0.41 TCGA-DY-A1H8-01 14 106110185 106110185 C T IGHG2 Missense_Mutation p.V145M 0.44 tolerated(0.09) probably_damaging(0.998) TCGA-DY-A1H8-01 14 23559778 23559778 A C ACIN1 Missense_Mutation p.L148R 0.37 probably_damaging(0.996) TCGA-DY-A1H8-01 14 24806435 24806435 G A RIPK3 Nonsense_Mutation p.Q378* 0.41 TCGA-DY-A1H8-01 15 48458145 48458145 G T MYEF2 Silent p.P170P 0.34 TCGA-DY-A1H8-01 15 90168898 90168898 G A TICRR Missense_Mutation p.G1786E 0.36 tolerated(1) benign(0.164) TCGA-DY-A1H8-01 15 90188650 90188650 C T KIF7 Missense_Mutation p.G652E 0.32 tolerated(1) benign(0.008) TCGA-DY-A1H8-01 16 27079839 27079839 G A C16orf82 RNA 0.35 TCGA-DY-A1H8-01 16 5061267 5061267 G T SEC14L5 Missense_Mutation p.D658Y 0.40 deleterious(0) possibly_damaging(0.907) TCGA-DY-A1H8-01 16 67991647 67991647 G T SLC12A4 Missense_Mutation p.P183Q 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-DY-A1H8-01 17 3337127 3337131 TCCCA - OR1E2 Frame_Shift_Del p.M2Tfs*67 0.33 TCGA-DY-A1H8-01 17 41004241 41004241 A T AOC3 Missense_Mutation p.N294I 0.50 tolerated(0.13) probably_damaging(0.968) TCGA-DY-A1H8-01 17 4720029 4720029 C T PLD2 Missense_Mutation p.R524W 0.45 deleterious(0) possibly_damaging(0.889) TCGA-DY-A1H8-01 17 6913446 6913446 G A ALOX12 Splice_Site p.X604_splice 0.57 TCGA-DY-A1H8-01 17 73055673 73055673 G T KCTD2 Silent p.T203T 0.54 TCGA-DY-A1H8-01 17 76694351 76694351 C T CYTH1 Missense_Mutation p.G271R 0.43 tolerated(0.2) possibly_damaging(0.778) TCGA-DY-A1H8-01 17 77757651 77757651 C T CBX2 Missense_Mutation p.R137C 0.47 deleterious(0) probably_damaging(0.977) TCGA-DY-A1H8-01 19 3527642 3527642 C T FZR1 Missense_Mutation p.R162W 0.50 deleterious(0.02) probably_damaging(0.972) TCGA-DY-A1H8-01 19 5047543 5047543 C T KDM4B Silent p.R163R 0.41 TCGA-DY-A1H8-01 19 51837453 51837453 C T VSIG10L Missense_Mutation p.R804H 0.33 tolerated(0.49) benign(0.016) TCGA-DY-A1H8-01 19 55450708 55450708 G A NLRP7 Silent p.H493H 0.51 TCGA-DY-A1H8-01 19 9087386 9087386 A G MUC16 Missense_Mutation p.S1477P 0.46 unknown(0) TCGA-DY-A1H8-01 1 149399102 149399102 G A HIST2H3PS2 3'Flank 0.46 TCGA-DY-A1H8-01 1 158626363 158626363 G A SPTA1 Silent p.N963N 0.32 TCGA-DY-A1H8-01 1 162750028 162750028 G A DDR2 Missense_Mutation p.D854N 0.38 tolerated_low_confidence(0.08) benign(0.027) TCGA-DY-A1H8-01 1 1691315 1691315 T A NADK Missense_Mutation p.Q97L 0.90 tolerated_low_confidence(0.35) benign(0) TCGA-DY-A1H8-01 1 17708469 17708469 G A PADI6 RNA 0.72 TCGA-DY-A1H8-01 1 179603694 179603695 - A TDRD5 Frame_Shift_Ins p.Q413Tfs*13 0.25 TCGA-DY-A1H8-01 1 186045604 186045604 G C HMCN1 Missense_Mutation p.D2779H 0.25 probably_damaging(0.998) TCGA-DY-A1H8-01 1 222802175 222802175 G T MIA3 Missense_Mutation p.G538V 0.52 deleterious(0.04) possibly_damaging(0.787) TCGA-DY-A1H8-01 1 224585850 224585850 G T WDR26 Missense_Mutation p.H575N 0.27 deleterious(0.01) possibly_damaging(0.688) TCGA-DY-A1H8-01 1 225477692 225477692 G T DNAH14 Nonsense_Mutation p.E2047* 0.50 TCGA-DY-A1H8-01 1 3321444 3321444 C T PRDM16 Silent p.C342C 0.50 TCGA-DY-A1H8-01 1 3413269 3413269 G A MEGF6 Missense_Mutation p.T1231M 0.85 deleterious(0) possibly_damaging(0.51) TCGA-DY-A1H8-01 21 11098830 11098830 G T BAGE2 RNA 0.38 TCGA-DY-A1H8-01 22 32828529 32828529 A G BPIFC Missense_Mutation p.I327T 0.35 deleterious(0.04) possibly_damaging(0.85) TCGA-DY-A1H8-01 22 39886283 39886283 G A MGAT3 3'UTR 0.49 TCGA-DY-A1H8-01 22 42611387 42611387 C A TCF20 5'UTR 0.93 TCGA-DY-A1H8-01 2 125175154 125175154 C T CNTNAP5 Silent p.Y172Y 0.42 TCGA-DY-A1H8-01 2 133540967 133540967 C A NCKAP5 Missense_Mutation p.E1139D 0.43 tolerated(0.06) benign(0.078) TCGA-DY-A1H8-01 2 1653199 1653199 G A PXDN Nonsense_Mutation p.R785* 0.46 TCGA-DY-A1H8-01 2 177054695 177054695 C T HOXD1 Missense_Mutation p.T271M 0.37 deleterious(0) probably_damaging(0.999) TCGA-DY-A1H8-01 2 227660499 227660499 G A IRS1 Missense_Mutation p.R986W 0.44 deleterious(0.01) benign(0.38) TCGA-DY-A1H8-01 2 238668758 238668758 G A LRRFIP1 Missense_Mutation p.D267N 0.29 deleterious(0) probably_damaging(0.995) TCGA-DY-A1H8-01 2 47233826 47233826 G A TTC7A Nonsense_Mutation p.W417* 0.48 TCGA-DY-A1H8-01 2 47256376 47256376 T G TTC7A Missense_Mutation p.M552R 0.44 deleterious(0) benign(0.17) TCGA-DY-A1H8-01 3 119334871 119334871 G A PLA1A Missense_Mutation p.R226Q 0.28 tolerated(0.05) benign(0.273) TCGA-DY-A1H8-01 3 121630513 121630513 C T SLC15A2 Missense_Mutation p.T143I 0.49 tolerated(0.64) benign(0.004) TCGA-DY-A1H8-01 3 122869111 122869111 G A PDIA5 Silent p.T391T 0.40 TCGA-DY-A1H8-01 3 148792068 148792068 C A HLTF Nonsense_Mutation p.E155* 0.38 TCGA-DY-A1H8-01 3 154011585 154011585 G A DHX36 Missense_Mutation p.P541L 0.47 deleterious(0) probably_damaging(0.976) TCGA-DY-A1H8-01 3 169991089 169991089 A G PRKCI Missense_Mutation p.M203V 0.43 tolerated(0.83) benign(0) TCGA-DY-A1H8-01 3 42727244 42727244 C A KLHL40 Missense_Mutation p.P45Q 0.08 deleterious(0) probably_damaging(1) TCGA-DY-A1H8-01 3 42739770 42739770 C T HHATL Missense_Mutation p.R186H 0.49 deleterious(0) probably_damaging(0.998) TCGA-DY-A1H8-01 3 52255756 52255756 C T TLR9 Missense_Mutation p.R1013Q 0.49 tolerated(0.55) benign(0.018) TCGA-DY-A1H8-01 3 77147227 77147227 G A ROBO2 Missense_Mutation p.V58I 0.28 deleterious(0) unknown(0) TCGA-DY-A1H8-01 4 113538777 113538777 G A C4orf21 Silent p.G807G 0.51 TCGA-DY-A1H8-01 4 126369708 126369708 T G FAT4 Missense_Mutation p.F2513V 0.46 probably_damaging(0.999) TCGA-DY-A1H8-01 4 162307653 162307653 G C FSTL5 Intron 0.44 TCGA-DY-A1H8-01 4 185138883 185138883 C A ENPP6 Silent p.L30L 0.38 TCGA-DY-A1H8-01 4 92519969 92519969 C T CCSER1 Missense_Mutation p.R822W 0.49 deleterious_low_confidence(0.05) benign(0.002) TCGA-DY-A1H8-01 5 112175303 112175303 C T APC Nonsense_Mutation p.Q1338* 0.84 TCGA-DY-A1H8-01 5 13809285 13809285 C T DNAH5 Silent p.T2540T 0.40 TCGA-DY-A1H8-01 5 140228183 140228183 G A PCDHA9 Missense_Mutation p.V35I 0.45 tolerated_low_confidence(0.12) benign(0.243) TCGA-DY-A1H8-01 5 146703500 146703500 G A STK32A Silent p.V100V 0.39 TCGA-DY-A1H8-01 5 176315471 176315471 G A HK3 Missense_Mutation p.A389V 0.44 tolerated(0.25) benign(0.009) TCGA-DY-A1H8-01 5 225588 225588 T A SDHA Missense_Mutation p.F123I 0.45 deleterious_low_confidence(0.03) benign(0.212) TCGA-DY-A1H8-01 6 112461971 112461971 G T LAMA4 Silent p.S989S 0.55 TCGA-DY-A1H8-01 6 122744050 122744050 C T HSF2 Missense_Mutation p.P340S 0.08 deleterious(0.03) possibly_damaging(0.764) TCGA-DY-A1H8-01 6 154360660 154360660 C G OPRM1 Missense_Mutation p.A87G 0.44 tolerated_low_confidence(0.32) benign(0.001) TCGA-DY-A1H8-01 6 18205825 18205825 A G KDM1B Intron 0.09 TCGA-DY-A1H8-01 7 141490717 141490717 G A TAS2R5 Missense_Mutation p.V186I 0.44 tolerated(0.56) benign(0.122) TCGA-DY-A1H8-01 7 37947062 37947062 G A SFRP4 3'UTR 0.45 TCGA-DY-A1H8-01 7 86986858 86986858 C T CROT Missense_Mutation p.P51S 0.47 tolerated_low_confidence(0.19) benign(0) TCGA-DY-A1H8-01 7 92762907 92762907 T C SAMD9L Missense_Mutation p.Q793R 0.23 tolerated(0.23) benign(0.062) TCGA-DY-A1H8-01 8 125989231 125989231 G A ZNF572 Missense_Mutation p.E241K 0.26 deleterious(0) probably_damaging(0.999) TCGA-DY-A1H8-01 8 134472027 134472027 G A ST3GAL1 Missense_Mutation p.R335W 0.54 probably_damaging(0.924) TCGA-DY-A1H8-01 8 26238260 26238260 C T BNIP3L 5'Flank 0.51 TCGA-DY-A1H8-01 8 26627845 26627845 C A ADRA1A Missense_Mutation p.A408S 0.50 tolerated_low_confidence(0.36) benign(0.156) TCGA-DY-A1H8-01 8 30700211 30700211 T G TEX15 Missense_Mutation p.K2108T 0.23 tolerated(0.12) possibly_damaging(0.544) TCGA-DY-A1H8-01 8 61769343 61769343 C G CHD7 Missense_Mutation p.L2502V 0.39 possibly_damaging(0.523) TCGA-DY-A1H8-01 8 90958456 90958456 G T NBN Nonsense_Mutation p.S661* 0.52 TCGA-DY-A1H8-01 8 90982748 90982748 C T NBN Missense_Mutation p.G247E 0.30 deleterious(0) probably_damaging(1) TCGA-DY-A1H8-01 8 96168084 96168084 T G PLEKHF2 3'UTR 0.59 TCGA-DY-A1H8-01 9 105767111 105767111 C T CYLC2 Silent p.V105V 0.41 TCGA-DY-A1H8-01 9 111617966 111617966 C T ACTL7B Missense_Mutation p.R82H 0.32 tolerated(0.09) benign(0.003) TCGA-DY-A1H8-01 9 138657014 138657014 C T KCNT1 Silent p.N391N 0.44 TCGA-DY-A1H8-01 9 2058432 2058432 C T SMARCA2 Missense_Mutation p.R497W 0.48 benign(0.381) TCGA-DY-A1H8-01 9 95179006 95179006 G T OMD Missense_Mutation p.L279I 0.39 tolerated(0.34) benign(0.252) TCGA-DY-A1H8-01 X 107334790 107334790 C T PSMD10 5'UTR 0.41 TCGA-DY-A1H8-01 X 107846223 107846223 G T COL4A5 Missense_Mutation p.A726S 0.48 unknown(0) TCGA-DY-A1H8-01 X 152482230 152482230 G A MAGEA1 Missense_Mutation p.R261C 0.41 tolerated(0.1) benign(0.008) TCGA-DY-A1H8-01 X 17819079 17819079 C T RAI2 Missense_Mutation p.R351Q 0.29 deleterious(0.01) unknown(0) TCGA-DY-A1H8-01 X 30255419 30255419 G A MAGEB3 3'UTR 0.27 TCGA-DY-A1H8-01 X 37028324 37028324 G A FAM47C Missense_Mutation p.R614H 0.55 tolerated(0.2) possibly_damaging(0.476) TCGA-DY-A1H8-01 X 47446149 47446149 C A TIMP1 3'UTR 0.26 TCGA-DY-A1H8-01 X 69510411 69510411 G A KIF4A Missense_Mutation p.V35M 0.39 deleterious(0) benign(0.183) TCGA-DY-A1H8-01 X 75004573 75004573 G A MAGEE2 Missense_Mutation p.T105M 0.43 deleterious(0.02) benign(0.258) TCGA-DY-A1H8-01 X 82763668 82763668 C T POU3F4 Silent p.N112N 0.46 TCGA-EF-5830-01 10 101993030 101993030 C T CWF19L1 Missense_Mutation p.R524H 0.84 tolerated(0.07) benign(0.013) TCGA-EF-5830-01 10 117059717 117059717 T C ATRNL1 Silent p.C863C 0.37 TCGA-EF-5830-01 11 119059156 119059156 G A PDZD3 Missense_Mutation p.V319M 0.47 deleterious(0) possibly_damaging(0.693) TCGA-EF-5830-01 11 123516432 123516432 C A SCN3B Nonsense_Mutation p.E28* 0.45 TCGA-EF-5830-01 11 55063132 55063132 G C TRIM51HP RNA 0.05 TCGA-EF-5830-01 11 62293619 62293619 A G AHNAK Missense_Mutation p.V2757A 0.15 possibly_damaging(0.523) TCGA-EF-5830-01 11 75115084 75115084 G A RPS3 Missense_Mutation p.R140Q 0.38 tolerated(0.1) benign(0.096) TCGA-EF-5830-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.45 deleterious(0) possibly_damaging(0.479) TCGA-EF-5830-01 12 32481358 32481358 C T BICD1 Missense_Mutation p.R657W 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-EF-5830-01 12 48459427 48459427 C T SENP1 Silent p.L357L 0.06 TCGA-EF-5830-01 12 55945194 55945194 C T OR6C4 Missense_Mutation p.R62W 0.45 deleterious_low_confidence(0.03) benign(0.002) TCGA-EF-5830-01 13 101316492 101316492 G A TMTC4 Silent p.L106L 0.31 TCGA-EF-5830-01 14 19553508 19553508 G T POTEG Missense_Mutation p.C31F 0.10 deleterious_low_confidence(0) benign(0.429) TCGA-EF-5830-01 14 74825081 74825081 G A VRTN Missense_Mutation p.R532H 0.42 deleterious(0) possibly_damaging(0.87) TCGA-EF-5830-01 14 90731462 90731462 G A PSMC1 Missense_Mutation p.G215S 0.40 deleterious(0) benign(0.325) TCGA-EF-5830-01 15 40920343 40920343 C T CASC5 Missense_Mutation p.P1844S 0.76 deleterious(0.04) possibly_damaging(0.693) TCGA-EF-5830-01 15 43527820 43527820 G C TGM5 Missense_Mutation p.Q521E 0.60 tolerated(0.07) benign(0.04) TCGA-EF-5830-01 15 50546420 50546420 T A HDC Missense_Mutation p.K209N 0.75 deleterious(0) benign(0.295) TCGA-EF-5830-01 15 99672941 99672941 C T SYNM Missense_Mutation p.S1458L 0.75 deleterious(0.01) probably_damaging(0.938) TCGA-EF-5830-01 16 21213466 21213466 G A ZP2 Missense_Mutation p.R416W 0.49 tolerated(0.18) benign(0.168) TCGA-EF-5830-01 16 3781327 3781327 A G CREBBP Missense_Mutation p.S1680P 0.08 unknown(0) TCGA-EF-5830-01 16 4644355 4644355 A G C16orf96 Silent p.E957E 0.49 TCGA-EF-5830-01 16 77389967 77389967 T G ADAMTS18 Missense_Mutation p.M444L 0.37 deleterious(0) probably_damaging(0.999) TCGA-EF-5830-01 16 80638248 80638248 C A CDYL2 3'UTR 0.41 TCGA-EF-5830-01 17 36955525 36955525 G T PIP4K2B Missense_Mutation p.N51K 0.12 deleterious(0.01) possibly_damaging(0.603) TCGA-EF-5830-01 17 40811902 40811902 G T TUBG2 Nonsense_Mutation p.E34* 0.16 TCGA-EF-5830-01 17 48744995 48744995 C T ABCC3 Silent p.Y504Y 0.78 TCGA-EF-5830-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.73 deleterious(0) probably_damaging(0.997) TCGA-EF-5830-01 19 13186419 13186419 G A NFIX Missense_Mutation p.G297R 0.44 deleterious(0.03) probably_damaging(0.954) TCGA-EF-5830-01 19 48789666 48789666 T C ZNF114 Missense_Mutation p.I262T 0.08 tolerated(0.25) benign(0.001) TCGA-EF-5830-01 19 9066829 9066829 C T MUC16 Missense_Mutation p.D6873N 0.38 unknown(0) TCGA-EF-5830-01 1 113244242 113244242 G A RHOC Missense_Mutation p.R168W 0.30 deleterious(0.03) benign(0.169) TCGA-EF-5830-01 1 12835688 12835688 G A PRAMEF12 Missense_Mutation p.R97Q 0.52 deleterious(0.02) benign(0.001) TCGA-EF-5830-01 1 145509017 145509017 G C RBM8A Missense_Mutation p.W148C 0.22 deleterious(0) probably_damaging(0.992) TCGA-EF-5830-01 1 153657499 153657499 T G NPR1 Missense_Mutation p.V515G 0.55 deleterious(0) benign(0.241) TCGA-EF-5830-01 1 193150027 193150027 A G B3GALT2 Silent p.D222D 0.41 TCGA-EF-5830-01 1 19983484 19983484 G T MINOS1-NBL1 Silent p.V136V 0.43 TCGA-EF-5830-01 1 206902139 206902139 G T MAPKAPK2 Missense_Mutation p.D122Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-EF-5830-01 1 39881959 39881959 C T KIAA0754 3'UTR 0.28 TCGA-EF-5830-01 1 40536642 40536642 C A CAP1 Silent p.G445G 0.31 TCGA-EF-5830-01 1 54640299 54640299 A G CYB5RL Missense_Mutation p.L314P 0.10 deleterious(0.02) possibly_damaging(0.515) TCGA-EF-5830-01 1 77333274 77333274 G A ST6GALNAC5 5'UTR 0.32 TCGA-EF-5830-01 20 31600614 31600614 G A BPIFB2 Missense_Mutation p.R70Q 0.29 tolerated(1) benign(0.002) TCGA-EF-5830-01 20 40730859 40730859 G A PTPRT Nonsense_Mutation p.R1207* 0.26 TCGA-EF-5830-01 20 61981238 61981238 C T CHRNA4 Missense_Mutation p.A509T 0.26 tolerated(0.19) benign(0.207) TCGA-EF-5830-01 21 47544566 47544566 C T COL6A2 Missense_Mutation p.A558V 0.59 deleterious(0.02) probably_damaging(0.984) TCGA-EF-5830-01 21 47545712 47545712 C T COL6A2 Silent p.G661G 0.08 TCGA-EF-5830-01 2 166172175 166172175 G A SCN2A Silent p.S526S 0.45 TCGA-EF-5830-01 2 179473354 179473354 G C TTN Missense_Mutation p.L17462V 0.13 TCGA-EF-5830-01 2 198318329 198318329 G A COQ10B Silent p.S15S 0.36 TCGA-EF-5830-01 2 200213525 200213525 C A SATB2 Missense_Mutation p.V358L 0.44 tolerated(0.07) benign(0.239) TCGA-EF-5830-01 2 219128239 219128239 C T GPBAR1 Silent p.S264S 0.40 TCGA-EF-5830-01 2 220337720 220337720 G A SPEG Missense_Mutation p.R1350H 0.49 benign(0.411) TCGA-EF-5830-01 3 139063034 139063034 G A MRPS22 Missense_Mutation p.E56K 0.57 tolerated(0.68) benign(0.005) TCGA-EF-5830-01 3 150883639 150883639 C A MED12L Missense_Mutation p.T455N 0.33 deleterious(0.01) possibly_damaging(0.574) TCGA-EF-5830-01 3 195512497 195512497 A G MUC4 Missense_Mutation p.L1985P 0.09 unknown(0) TCGA-EF-5830-01 3 196088743 196088743 A T UBXN7 Missense_Mutation p.I427N 0.46 deleterious(0) possibly_damaging(0.891) TCGA-EF-5830-01 3 50396032 50396032 C T TMEM115 Missense_Mutation p.D155N 0.54 deleterious(0) probably_damaging(0.996) TCGA-EF-5830-01 3 69244257 69244257 C G FRMD4B Silent p.L468L 0.40 TCGA-EF-5830-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.50 deleterious(0) probably_damaging(0.998) TCGA-EF-5830-01 4 159568118 159568118 A G RXFP1 Silent p.T507T 0.37 TCGA-EF-5830-01 4 72611871 72611871 A G GC 3'UTR 0.44 TCGA-EF-5830-01 5 112175148 112175148 A - APC Frame_Shift_Del p.I1287* 0.50 TCGA-EF-5830-01 5 143545033 143545033 A T YIPF5 Nonsense_Mutation p.Y82* 0.39 TCGA-EF-5830-01 5 24593628 24593628 G C CDH10 5'UTR 0.35 TCGA-EF-5830-01 5 33937619 33937619 C T RXFP3 Silent p.R258R 0.42 TCGA-EF-5830-01 5 35954453 35954453 C T UGT3A1 Missense_Mutation p.A475T 0.38 tolerated(0.07) benign(0.363) TCGA-EF-5830-01 6 13791027 13791027 A T MCUR1 3'UTR 0.36 TCGA-EF-5830-01 6 146276034 146276034 C A SHPRH Missense_Mutation p.S142I 0.44 tolerated_low_confidence(0.19) benign(0.211) TCGA-EF-5830-01 6 147123782 147123782 C T ADGB Intron 0.52 TCGA-EF-5830-01 6 152674796 152674796 G A SYNE1 Silent p.H3670H 0.44 TCGA-EF-5830-01 6 152737961 152737961 C A SYNE1 Missense_Mutation p.A1871S 0.35 benign(0.05) TCGA-EF-5830-01 6 163956037 163956037 C T QKI Silent p.P142P 0.05 TCGA-EF-5830-01 6 26377176 26377176 T G BTN3A2 3'UTR 0.40 TCGA-EF-5830-01 6 29431152 29431152 G T OR2H1 3'UTR 0.35 TCGA-EF-5830-01 6 35048831 35048831 C T ANKS1A Missense_Mutation p.R869W 0.52 tolerated(0.06) possibly_damaging(0.582) TCGA-EF-5830-01 6 41556431 41556431 C T FOXP4 Missense_Mutation p.R343W 0.48 deleterious(0) probably_damaging(0.987) TCGA-EF-5830-01 6 64436546 64436546 C T EYS Missense_Mutation p.R2700K 0.33 tolerated(0.83) benign(0.002) TCGA-EF-5830-01 7 100417812 100417812 G A EPHB4 Silent p.R305R 0.28 TCGA-EF-5830-01 7 107743551 107743551 C T LAMB4 Missense_Mutation p.R373H 0.23 tolerated(0.15) benign(0.393) TCGA-EF-5830-01 7 127990957 127990957 G A PRRT4 Nonsense_Mutation p.R885* 0.34 TCGA-EF-5830-01 7 141896383 141896383 T G RP11-1220K2.2 Missense_Mutation p.L1500R 0.36 probably_damaging(0.998) TCGA-EF-5830-01 7 44228622 44228622 T C GCK 5'UTR 0.09 TCGA-EF-5830-01 7 53103987 53103987 G A POM121L12 Missense_Mutation p.R208Q 0.73 tolerated(0.43) benign(0.022) TCGA-EF-5830-01 7 7413179 7413179 T C COL28A1 Splice_Site p.X787_splice 0.33 TCGA-EF-5830-01 8 144651997 144651997 C T MROH6 Missense_Mutation p.R391Q 0.07 tolerated(0.44) benign(0.011) TCGA-EF-5830-01 8 145584592 145584592 G A SLC52A2 Missense_Mutation p.G419S 0.32 deleterious(0) probably_damaging(1) TCGA-EF-5830-01 9 133787222 133787222 C T FIBCD1 Silent p.A301A 0.25 TCGA-EF-5830-01 9 135374875 135374875 A G C9orf171 Missense_Mutation p.N174D 0.08 tolerated(0.25) possibly_damaging(0.604) TCGA-EF-5830-01 9 135983446 135983446 T G RALGDS Missense_Mutation p.S376R 0.50 tolerated(0.64) unknown(0) TCGA-EF-5830-01 9 137623961 137623961 G A COL5A1 Silent p.A459A 0.37 TCGA-EF-5830-01 9 841775 841775 T C DMRT1 5'UTR 0.12 TCGA-EF-5830-01 X 108867765 108867765 C T KCNE1L 3'UTR 1.00 TCGA-EF-5830-01 X 1428338 1428338 G A CSF2RA Missense_Mutation p.R424H 0.69 tolerated(0.17) benign(0.007) TCGA-EF-5830-01 X 18954250 18954250 C A PHKA2 Missense_Mutation p.A354S 0.86 deleterious(0.02) probably_damaging(0.932) TCGA-EF-5830-01 X 54107844 54107844 C T FAM120C Missense_Mutation p.M963I 0.12 tolerated(0.4) probably_damaging(0.961) TCGA-EI-6506-01 10 118313342 118313342 G A PNLIP Missense_Mutation p.R188H 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6506-01 10 53459173 53459173 C A CSTF2T Missense_Mutation p.R46L 0.32 deleterious(0) probably_damaging(0.977) TCGA-EI-6506-01 11 118886110 118886110 T C CCDC84 Missense_Mutation p.F300S 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6506-01 11 123900707 123900707 T G OR10G8 Missense_Mutation p.S126R 0.12 deleterious(0) benign(0.027) TCGA-EI-6506-01 11 57319677 57319677 T C UBE2L6 3'UTR 0.38 TCGA-EI-6506-01 11 70118351 70118351 G A PPFIA1 Missense_Mutation p.G25S 0.28 tolerated(0.22) benign(0.031) TCGA-EI-6506-01 12 101764871 101764871 C T UTP20 Silent p.I2241I 0.17 TCGA-EI-6506-01 12 108920086 108920086 C T SART3 Silent p.T720T 0.35 TCGA-EI-6506-01 12 112601396 112601396 T C HECTD4 Missense_Mutation p.M4137V 0.09 benign(0.004) TCGA-EI-6506-01 12 12982592 12982592 C T DDX47 3'UTR 0.31 TCGA-EI-6506-01 12 48360513 48360513 G - TMEM106C Frame_Shift_Del p.Y201Tfs*14 0.21 TCGA-EI-6506-01 13 112725400 112725400 G A SOX1 3'UTR 0.18 TCGA-EI-6506-01 13 25911115 25911115 G A NUPL1 Missense_Mutation p.G493S 0.18 tolerated(0.14) benign(0.17) TCGA-EI-6506-01 13 45971466 45971466 T C SLC25A30 Missense_Mutation p.K254R 0.11 tolerated(0.68) benign(0.008) TCGA-EI-6506-01 13 58207643 58207643 G C PCDH17 Silent p.V321V 0.19 TCGA-EI-6506-01 14 20915627 20915627 G A OSGEP Missense_Mutation p.R308W 0.23 deleterious(0) benign(0.339) TCGA-EI-6506-01 14 55433311 55433311 C A WDHD1 Missense_Mutation p.R731L 0.34 deleterious(0) possibly_damaging(0.805) TCGA-EI-6506-01 14 61115504 61115504 G A SIX1 Missense_Mutation p.S135L 0.18 deleterious(0.03) probably_damaging(0.955) TCGA-EI-6506-01 14 68250183 68250183 C T ZFYVE26 Missense_Mutation p.S1229N 0.32 tolerated(1) benign(0) TCGA-EI-6506-01 14 74999244 74999244 G A LTBP2 Silent p.N624N 0.33 TCGA-EI-6506-01 14 94594955 94594955 C T IFI27L2 Missense_Mutation p.G32E 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-EI-6506-01 15 32323208 32323208 T C CHRNA7 Missense_Mutation p.F84L 0.08 tolerated(0.49) benign(0.095) TCGA-EI-6506-01 15 50534631 50534631 C G HDC Missense_Mutation p.K605N 0.14 deleterious_low_confidence(0.01) benign(0.174) TCGA-EI-6506-01 15 50999899 50999899 T C SPPL2A 3'UTR 0.17 TCGA-EI-6506-01 15 54919114 54919114 G A UNC13C Missense_Mutation p.G2150R 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-EI-6506-01 15 66727441 66727441 T G MAP2K1 Missense_Mutation p.F53V 0.26 deleterious(0.01) probably_damaging(0.951) TCGA-EI-6506-01 15 79750551 79750551 G A KIAA1024 Missense_Mutation p.G688R 0.33 deleterious(0.01) probably_damaging(0.986) TCGA-EI-6506-01 15 85149872 85149872 C T ZSCAN2 Intron 0.20 TCGA-EI-6506-01 15 85747604 85747604 G T AC044860.1 3'Flank 0.44 TCGA-EI-6506-01 15 91312416 91312416 G A BLM Silent p.K787K 0.06 TCGA-EI-6506-01 16 1537674 1537674 T C PTX4 Missense_Mutation p.R142G 0.10 tolerated(0.24) benign(0.009) TCGA-EI-6506-01 16 16216007 16216007 A G ABCC1 Missense_Mutation p.Y1189C 0.17 tolerated(0.23) probably_damaging(0.987) TCGA-EI-6506-01 16 19179932 19179932 G A SYT17 5'UTR 0.23 TCGA-EI-6506-01 16 30750596 30750596 C T SRCAP Missense_Mutation p.R3079W 0.25 unknown(0) TCGA-EI-6506-01 16 3274544 3274550 TCTCTAT AA ZNF200 Frame_Shift_Del p.Y177Ffs*6 0.18 TCGA-EI-6506-01 16 50664134 50664134 T G NKD1 Missense_Mutation p.V167G 0.23 deleterious(0) probably_damaging(0.982) TCGA-EI-6506-01 16 81077779 81077779 T C ATMIN Missense_Mutation p.I559T 0.12 tolerated(0.86) benign(0.002) TCGA-EI-6506-01 16 830194 830194 G A MSLNL Silent p.P269P 0.31 TCGA-EI-6506-01 17 12639605 12639605 C T MYOCD Silent p.D181D 0.28 TCGA-EI-6506-01 17 3448549 3448549 C G TRPV3 Missense_Mutation p.E46Q 0.26 deleterious(0.02) possibly_damaging(0.623) TCGA-EI-6506-01 17 39913781 39913781 G A JUP Silent p.Y644Y 0.38 TCGA-EI-6506-01 17 7574018 7574018 G T TP53 Missense_Mutation p.R337S 0.34 deleterious(0.01) probably_damaging(0.914) TCGA-EI-6506-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.28 deleterious(0) probably_damaging(0.998) TCGA-EI-6506-01 18 51729417 51729417 A T MBD2 Intron 0.20 TCGA-EI-6506-01 19 15063753 15063753 C T SLC1A6 Missense_Mutation p.V496M 0.16 deleterious(0.01) probably_damaging(0.984) TCGA-EI-6506-01 19 17058029 17058029 C T CPAMD8 Missense_Mutation p.M886I 0.31 tolerated(0.26) benign(0.007) TCGA-EI-6506-01 19 21280995 21280995 C T ZNF714 5'UTR 0.35 TCGA-EI-6506-01 19 2877893 2877893 A G ZNF556 Missense_Mutation p.K313E 0.43 tolerated(0.05) probably_damaging(0.919) TCGA-EI-6506-01 19 35850566 35850566 G T FFAR3 Missense_Mutation p.R258S 0.08 deleterious(0) probably_damaging(0.998) TCGA-EI-6506-01 19 36122298 36122298 C T RBM42 Missense_Mutation p.R145W 0.20 deleterious(0.02) probably_damaging(0.984) TCGA-EI-6506-01 19 3806121 3806121 G A ZFR2 Silent p.H882H 0.25 TCGA-EI-6506-01 19 39281365 39281365 C T LGALS7B Silent p.G44G 0.09 TCGA-EI-6506-01 19 40095882 40095882 C T LGALS13 Missense_Mutation p.R53C 0.21 deleterious(0.03) possibly_damaging(0.849) TCGA-EI-6506-01 19 40408807 40408807 G A FCGBP Silent p.N1344N 0.19 TCGA-EI-6506-01 19 41387542 41387542 T G CYP2A7 Missense_Mutation p.S99R 0.32 deleterious(0) probably_damaging(1) TCGA-EI-6506-01 19 49841186 49841186 A G CD37 Missense_Mutation p.E116G 0.14 tolerated(0.1) benign(0.345) TCGA-EI-6506-01 19 52249968 52249968 C T FPR1 Missense_Mutation p.G94S 0.22 deleterious(0) probably_damaging(0.982) TCGA-EI-6506-01 19 52399807 52399807 G A ZNF649 Silent p.G52G 0.17 TCGA-EI-6506-01 19 54651930 54651930 T G CNOT3 Silent p.P314P 0.31 TCGA-EI-6506-01 19 56160340 56160340 T C CCDC106 5'UTR 0.09 TCGA-EI-6506-01 19 57328632 57328632 C T PEG3 Missense_Mutation p.R393H 0.40 tolerated(0.1) benign(0.391) TCGA-EI-6506-01 19 9083247 9083247 C G MUC16 Missense_Mutation p.E2856D 0.35 unknown(0) TCGA-EI-6506-01 1 107867468 107867468 G A NTNG1 Missense_Mutation p.V271I 0.10 tolerated(0.17) benign(0.022) TCGA-EI-6506-01 1 111060544 111060544 C T KCNA10 Missense_Mutation p.R289Q 0.33 deleterious(0) probably_damaging(1) TCGA-EI-6506-01 1 152277472 152277472 C A FLG Missense_Mutation p.S3297I 0.40 unknown(0) TCGA-EI-6506-01 1 156018300 156018300 G A UBQLN4 Missense_Mutation p.R298W 0.11 deleterious(0) possibly_damaging(0.872) TCGA-EI-6506-01 1 158648254 158648254 C T SPTA1 Missense_Mutation p.R250H 0.42 tolerated(0.73) benign(0.002) TCGA-EI-6506-01 1 161091833 161091833 G C DEDD 3'UTR 0.40 TCGA-EI-6506-01 1 171505408 171505408 A T PRRC2C Missense_Mutation p.I760F 0.10 unknown(0) TCGA-EI-6506-01 1 203024713 203024713 G A PPFIA4 Silent p.A155A 0.31 TCGA-EI-6506-01 1 20668971 20668971 G A VWA5B1 Missense_Mutation p.R727H 0.07 tolerated(0.28) benign(0.007) TCGA-EI-6506-01 1 214820682 214820682 A C CENPF Missense_Mutation p.Y2590S 0.09 benign(0.007) TCGA-EI-6506-01 1 215408221 215408221 C T KCNK2 Silent p.A338A 0.09 TCGA-EI-6506-01 1 216373185 216373185 C T USH2A Missense_Mutation p.E1199K 0.38 benign(0.124) TCGA-EI-6506-01 1 245021006 245021008 ATC - HNRNPU In_Frame_Del p.M502del 0.23 TCGA-EI-6506-01 1 62330030 62330030 C G INADL Missense_Mutation p.H854D 0.45 tolerated(0.28) benign(0.097) TCGA-EI-6506-01 1 7724489 7724489 G A CAMTA1 Missense_Mutation p.E628K 0.33 deleterious_low_confidence(0.01) benign(0.359) TCGA-EI-6506-01 1 89414923 89414923 C T CCBL2 Missense_Mutation p.R331H 0.25 tolerated(0.42) benign(0.136) TCGA-EI-6506-01 1 9100202 9100202 C T SLC2A5 Silent p.Q206Q 0.47 TCGA-EI-6506-01 20 18037322 18037322 C T OVOL2 Silent p.P100P 0.11 TCGA-EI-6506-01 20 21283979 21283979 C G XRN2 5'UTR 0.47 TCGA-EI-6506-01 20 31889044 31889044 G A BPIFB1 Silent p.K251K 0.15 TCGA-EI-6506-01 20 44445347 44445347 G C UBE2C Splice_Site p.X161_splice 0.09 TCGA-EI-6506-01 20 51870661 51870661 G A TSHZ2 Missense_Mutation p.A222T 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6506-01 20 57415590 57415590 C T RP4-806M20.3 5'Flank 0.11 TCGA-EI-6506-01 20 5902992 5902992 G A CHGB Missense_Mutation p.V68I 0.13 tolerated(0.53) benign(0.061) TCGA-EI-6506-01 20 60574102 60574102 A - TAF4 Frame_Shift_Del p.D951Ifs*16 0.11 TCGA-EI-6506-01 20 60991872 60991872 C T RBBP8NL Missense_Mutation p.R86Q 0.12 deleterious(0.01) possibly_damaging(0.54) TCGA-EI-6506-01 21 10862645 10862645 G T IGHV1OR21-1 Silent p.L8L 0.07 TCGA-EI-6506-01 22 24622043 24622043 C T GGT5 Splice_Site p.X410_splice 0.36 TCGA-EI-6506-01 2 116485450 116485450 G A DPP10 Missense_Mutation p.R216Q 0.16 deleterious(0.04) benign(0.142) TCGA-EI-6506-01 2 11706632 11706632 C T GREB1 Missense_Mutation p.R102C 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6506-01 2 179629528 179629528 C T TTN Silent p.P3238P 0.19 TCGA-EI-6506-01 2 182783548 182783548 T G SSFA2 Missense_Mutation p.L978V 0.08 deleterious(0) probably_damaging(0.999) TCGA-EI-6506-01 2 183888638 183888638 C T NCKAP1 Missense_Mutation p.G45R 0.23 deleterious(0.01) possibly_damaging(0.651) TCGA-EI-6506-01 2 198362021 198362021 G T HSPD1 Nonsense_Mutation p.Y90* 0.17 TCGA-EI-6506-01 2 20202976 20202976 G A MATN3 Missense_Mutation p.H288Y 0.05 tolerated(1) possibly_damaging(0.476) TCGA-EI-6506-01 2 20647736 20647736 C G RHOB Silent p.V170V 0.16 TCGA-EI-6506-01 2 207527717 207527717 T A DYTN Missense_Mutation p.I515F 0.18 tolerated(0.15) benign(0.014) TCGA-EI-6506-01 2 207619951 207619951 C A MDH1B Missense_Mutation p.S231I 0.20 tolerated(0.06) benign(0.058) TCGA-EI-6506-01 2 239306174 239306174 G A TRAF3IP1 Silent p.T588T 0.19 TCGA-EI-6506-01 2 37310491 37310491 G C HEATR5B Missense_Mutation p.P23A 0.09 tolerated(0.78) benign(0.004) TCGA-EI-6506-01 2 5835209 5835209 C G SOX11 3'UTR 0.09 TCGA-EI-6506-01 2 9695705 9695705 G T ADAM17 Missense_Mutation p.S10R 0.46 tolerated_low_confidence(0.38) benign(0.226) TCGA-EI-6506-01 3 108682309 108682309 C T MORC1 Silent p.L917L 0.19 TCGA-EI-6506-01 3 112969433 112969433 G A BOC Silent p.A43A 0.33 TCGA-EI-6506-01 3 38640450 38640450 C T SCN5A Missense_Mutation p.R661Q 0.20 deleterious(0.02) possibly_damaging(0.783) TCGA-EI-6506-01 3 38945378 38945378 T G SCN11A Missense_Mutation p.K607T 0.13 tolerated(0.83) benign(0.003) TCGA-EI-6506-01 3 54604067 54604067 C T CACNA2D3 Missense_Mutation p.A275V 0.26 deleterious(0) probably_damaging(0.982) TCGA-EI-6506-01 3 56766255 56766255 G A ARHGEF3 Intron 0.19 TCGA-EI-6506-01 3 71101700 71101701 TT - FOXP1 Frame_Shift_Del p.K168Tfs*3 0.19 TCGA-EI-6506-01 4 123302158 123302158 G A ADAD1 Missense_Mutation p.E62K 0.14 tolerated(0.1) benign(0.354) TCGA-EI-6506-01 4 186299477 186299477 G A LRP2BP 5'UTR 0.26 TCGA-EI-6506-01 4 187539013 187539013 G A FAT1 Silent p.T2909T 0.23 TCGA-EI-6506-01 4 2955244 2955244 T A NOP14 Missense_Mutation p.K247N 0.21 deleterious(0.02) benign(0.292) TCGA-EI-6506-01 4 69337267 69337267 A C TMPRSS11E Missense_Mutation p.Q139P 0.47 deleterious(0.03) possibly_damaging(0.832) TCGA-EI-6506-01 4 76489581 76489581 C T C4orf26 Silent p.T123T 0.32 TCGA-EI-6506-01 4 87655980 87655980 G C PTPN13 Missense_Mutation p.L701F 0.12 tolerated(0.21) probably_damaging(0.994) TCGA-EI-6506-01 5 100147413 100147413 G A ST8SIA4 3'UTR 0.18 TCGA-EI-6506-01 5 112175136 112175136 C A APC Nonsense_Mutation p.S1282* 0.30 TCGA-EI-6506-01 5 112403879 112403879 C T MCC Missense_Mutation p.E643K 0.24 deleterious(0.02) benign(0.351) TCGA-EI-6506-01 5 122110863 122110864 - GG SNX2 Frame_Shift_Ins p.D23Gfs*14 0.42 TCGA-EI-6506-01 5 134223788 134223788 T C TXNDC15 Silent p.S169S 0.08 TCGA-EI-6506-01 5 140230198 140230198 G A PCDHA9 Silent p.A706A 0.24 TCGA-EI-6506-01 5 140710662 140710662 A G PCDHGA1 Silent p.E137E 0.22 TCGA-EI-6506-01 5 150228085 150228085 G A IRGM Missense_Mutation p.A134T 0.15 deleterious(0.05) benign(0.005) TCGA-EI-6506-01 5 39202865 39202865 G T FYB Silent p.V76V 0.14 TCGA-EI-6506-01 5 71616252 71616252 C G PTCD2 Missense_Mutation p.R15G 0.11 tolerated(0.2) benign(0.002) TCGA-EI-6506-01 5 7766870 7766870 C G ADCY2 Nonsense_Mutation p.S722* 0.25 TCGA-EI-6506-01 6 112508764 112508764 C T LAMA4 Missense_Mutation p.R285Q 0.26 tolerated(0.21) benign(0.206) TCGA-EI-6506-01 6 161139747 161139747 C T PLG Missense_Mutation p.R325C 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6506-01 6 28297389 28297389 T C ZSCAN31 Silent p.E24E 0.07 TCGA-EI-6506-01 6 36973580 36973580 C T FGD2 5'UTR 0.18 TCGA-EI-6506-01 6 39271748 39271748 C T KCNK17 Missense_Mutation p.G225S 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6506-01 6 43308584 43308584 C - ZNF318 Frame_Shift_Del p.D1147Ifs*9 0.11 TCGA-EI-6506-01 6 97053827 97053827 T A FHL5 Missense_Mutation p.F128L 0.07 tolerated(0.06) benign(0.155) TCGA-EI-6506-01 7 21788302 21788302 G A DNAH11 Missense_Mutation p.R2879H 0.35 benign(0.011) TCGA-EI-6506-01 7 44560626 44560626 G C NPC1L1 Missense_Mutation p.F1015L 0.13 deleterious(0) probably_damaging(0.999) TCGA-EI-6506-01 7 72849109 72849109 C A FZD9 Missense_Mutation p.H258N 0.12 tolerated(0.41) benign(0.412) TCGA-EI-6506-01 7 76024570 76024570 C T SRCRB4D Missense_Mutation p.A316T 0.19 tolerated(0.22) benign(0.004) TCGA-EI-6506-01 7 82580730 82580730 A C PCLO Missense_Mutation p.I3058M 0.11 unknown(0) TCGA-EI-6506-01 7 99722184 99722184 C T CNPY4 Silent p.Y171Y 0.15 TCGA-EI-6506-01 8 133192501 133192501 C T KCNQ3 Missense_Mutation p.R227Q 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-EI-6506-01 8 146067145 146067145 A G ZNF7 Missense_Mutation p.N218S 0.10 tolerated(0.07) benign(0.004) TCGA-EI-6506-01 8 19362934 19362934 T G CSGALNACT1 Missense_Mutation p.K138Q 0.21 tolerated(0.18) probably_damaging(0.93) TCGA-EI-6506-01 8 3245034 3245034 C T CSMD1 Missense_Mutation p.A922T 0.43 possibly_damaging(0.508) TCGA-EI-6506-01 8 41166576 41166576 C T SFRP1 Missense_Mutation p.D35N 0.36 deleterious(0) benign(0.284) TCGA-EI-6506-01 8 53589047 53589047 C T RB1CC1 Missense_Mutation p.A152T 0.19 deleterious(0) probably_damaging(0.998) TCGA-EI-6506-01 8 53853198 53853198 G A NPBWR1 Missense_Mutation p.R244H 0.18 deleterious(0) probably_damaging(0.945) TCGA-EI-6506-01 8 62556507 62556507 G A ASPH Missense_Mutation p.P236S 0.21 tolerated_low_confidence(0.15) benign(0.034) TCGA-EI-6506-01 8 77766388 77766388 G T ZFHX4 Nonsense_Mutation p.E2411* 0.18 TCGA-EI-6506-01 9 119770416 119770416 G T ASTN2 Missense_Mutation p.Q465K 0.28 deleterious(0.02) unknown(0) TCGA-EI-6506-01 9 119976922 119976922 C T ASTN2 Missense_Mutation p.A244T 0.13 deleterious_low_confidence(0) unknown(0) TCGA-EI-6506-01 9 129594890 129594890 C T ZBTB43 Silent p.D34D 0.19 TCGA-EI-6506-01 9 136277947 136277947 T C REXO4 Missense_Mutation p.S223G 0.08 tolerated(0.09) benign(0.003) TCGA-EI-6506-01 9 138557188 138557188 G A LCN9 Silent p.T135T 0.16 TCGA-EI-6506-01 9 141016272 141016272 G A CACNA1B Missense_Mutation p.E2281K 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6506-01 9 39085836 39085836 T A CNTNAP3 Intron 0.22 TCGA-EI-6506-01 9 39178351 39178351 T C CNTNAP3 Missense_Mutation p.E182G 0.22 deleterious(0.03) possibly_damaging(0.52) TCGA-EI-6506-01 9 80944012 80944012 A T PSAT1 3'UTR 0.20 TCGA-EI-6506-01 9 90500388 90500388 G A SPATA31E1 Missense_Mutation p.R329Q 0.26 tolerated(0.21) benign(0) TCGA-EI-6506-01 X 10427780 10427780 G A MID1 Silent p.H451H 0.29 TCGA-EI-6506-01 X 107979196 107979196 C T IRS4 Missense_Mutation p.A127T 0.39 deleterious_low_confidence(0.04) probably_damaging(0.937) TCGA-EI-6506-01 X 125299499 125299499 G A DCAF12L2 Missense_Mutation p.R137W 0.27 deleterious(0.01) possibly_damaging(0.762) TCGA-EI-6506-01 X 135594233 135594233 A T HTATSF1 3'UTR 0.22 TCGA-EI-6506-01 X 138678815 138678815 G A MCF2 Nonsense_Mutation p.R800* 0.20 TCGA-EI-6506-01 X 151900602 151900602 C T MAGEA12 Missense_Mutation p.G67R 0.26 tolerated(0.8) benign(0.147) TCGA-EI-6506-01 X 36385109 36385109 G A CXorf30 Missense_Mutation p.V464I 0.26 tolerated(1) benign(0.001) TCGA-EI-6506-01 X 37027423 37027423 C T FAM47C Missense_Mutation p.R314C 0.23 deleterious(0.01) possibly_damaging(0.55) TCGA-EI-6506-01 X 37028523 37028523 G A FAM47C Silent p.P680P 0.21 TCGA-EI-6506-01 X 49074243 49074243 G A CACNA1F Silent p.D1031D 0.23 TCGA-EI-6506-01 X 53563435 53563435 C T HUWE1 Missense_Mutation p.G4111R 0.18 unknown(0) TCGA-EI-6506-01 X 62898439 62898439 C G ARHGEF9 Missense_Mutation p.W192S 0.30 tolerated(0.97) benign(0.001) TCGA-EI-6506-01 X 69247710 69247710 A G EDA Missense_Mutation p.K177R 0.16 tolerated_low_confidence(0.2) unknown(0) TCGA-EI-6506-01 X 77126382 77126382 G A MAGT1 Nonsense_Mutation p.R137* 0.20 TCGA-EI-6506-01 X 78012027 78012027 G A LPAR4 3'UTR 0.21 TCGA-EI-6506-01 X 78217409 78217409 A G P2RY10 3'UTR 0.12 TCGA-EI-6506-01 X 83129020 83129020 A T CYLC1 Missense_Mutation p.K435M 0.21 deleterious(0) possibly_damaging(0.891) TCGA-EI-6506-01 X 8433998 8433998 T A VCX3B Missense_Mutation p.S105R 0.07 deleterious(0.02) unknown(0) TCGA-EI-6506-01 X 86772920 86772920 G C KLHL4 Missense_Mutation p.E8D 0.23 tolerated_low_confidence(0.19) probably_damaging(0.995) TCGA-EI-6507-01 10 101578954 101578954 G T ABCC2 Missense_Mutation p.A850S 0.19 tolerated(0.42) benign(0.024) TCGA-EI-6507-01 10 102783745 102783745 C T PDZD7 Missense_Mutation p.G103R 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 10 102894060 102894060 G A TLX1 Missense_Mutation p.A233T 0.19 tolerated(0.15) possibly_damaging(0.464) TCGA-EI-6507-01 10 102987204 102987204 G A LBX1 Silent p.G223G 0.50 TCGA-EI-6507-01 10 103342712 103342712 G A POLL Intron 0.28 TCGA-EI-6507-01 10 105217977 105217977 G A CALHM1 Missense_Mutation p.R178C 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6507-01 10 105793886 105793886 C T COL17A1 Missense_Mutation p.G1325S 0.22 unknown(0) TCGA-EI-6507-01 10 108489870 108489870 G A SORCS1 Missense_Mutation p.S321F 0.22 deleterious(0) probably_damaging(0.993) TCGA-EI-6507-01 10 118231354 118231354 G A PNLIPRP3 Missense_Mutation p.G379R 0.22 deleterious(0) probably_damaging(0.951) TCGA-EI-6507-01 10 118231390 118231390 A G PNLIPRP3 Missense_Mutation p.S391G 0.17 deleterious(0.03) benign(0.062) TCGA-EI-6507-01 10 121582687 121582687 C T INPP5F Missense_Mutation p.R713C 0.21 tolerated(0.08) benign(0.335) TCGA-EI-6507-01 10 1230914 1230914 C A ADARB2 Missense_Mutation p.G644C 0.27 deleterious(0) probably_damaging(0.99) TCGA-EI-6507-01 10 123733721 123733721 C T NSMCE4A Intron 0.16 TCGA-EI-6507-01 10 127527574 127527574 A G DHX32 Missense_Mutation p.M626T 0.32 deleterious(0.01) benign(0.422) TCGA-EI-6507-01 10 129868630 129868630 C T PTPRE Silent p.D403D 0.26 TCGA-EI-6507-01 10 129906252 129906252 C T MKI67 Silent p.A1284A 0.24 TCGA-EI-6507-01 10 13325835 13325835 C - PHYH Frame_Shift_Del p.G228Efs*22 0.22 TCGA-EI-6507-01 10 134013933 134013933 G T DPYSL4 Missense_Mutation p.W295C 0.20 deleterious(0) probably_damaging(0.997) TCGA-EI-6507-01 10 134623955 134623955 G A TTC40 Missense_Mutation p.A2541V 0.18 tolerated_low_confidence(0.13) benign(0.045) TCGA-EI-6507-01 10 134999821 134999821 G A KNDC1 Silent p.P323P 0.33 TCGA-EI-6507-01 10 135106569 135106569 C T TUBGCP2 Missense_Mutation p.R361H 0.13 tolerated(0.07) probably_damaging(0.982) TCGA-EI-6507-01 10 135179533 135179534 - T ECHS1 Frame_Shift_Ins p.I229Nfs*6 0.30 TCGA-EI-6507-01 10 13538824 13538824 C T BEND7 Silent p.T119T 0.28 TCGA-EI-6507-01 10 13743445 13743445 G A FRMD4A Silent p.S290S 0.26 TCGA-EI-6507-01 10 17865215 17865215 T C MRC1L1 Silent p.S68S 0.51 TCGA-EI-6507-01 10 18828645 18828645 C T CACNB2 Missense_Mutation p.R659C 0.25 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-EI-6507-01 10 25010970 25010970 C T ARHGAP21 5'UTR 0.24 TCGA-EI-6507-01 10 29760116 29760116 C - SVIL Frame_Shift_Del p.M1863Wfs*44 0.20 TCGA-EI-6507-01 10 33208969 33208969 T - ITGB1 Frame_Shift_Del p.K438Rfs*17 0.23 TCGA-EI-6507-01 10 35456497 35456497 C A CREM Intron 0.45 TCGA-EI-6507-01 10 3821689 3821689 C A KLF6 3'UTR 0.14 TCGA-EI-6507-01 10 42928713 42928713 C T CCNYL2 RNA 0.21 TCGA-EI-6507-01 10 48371212 48371212 C T ZNF488 Missense_Mutation p.A227V 0.26 tolerated(1) benign(0.221) TCGA-EI-6507-01 10 48389041 48389041 G A RBP3 Missense_Mutation p.P613S 0.14 deleterious(0) probably_damaging(0.935) TCGA-EI-6507-01 10 49395324 49395324 C T FRMPD2 Missense_Mutation p.G726D 0.29 tolerated(0.3) benign(0.086) TCGA-EI-6507-01 10 49939318 49939318 G A WDFY4 Silent p.S431S 0.18 TCGA-EI-6507-01 10 5032098 5032098 C T AKR1C2 3'UTR 0.23 TCGA-EI-6507-01 10 50901953 50901953 C T C10orf53 Intron 0.25 TCGA-EI-6507-01 10 50954813 50954813 C T OGDHL Missense_Mutation p.V427I 0.18 tolerated(1) benign(0.005) TCGA-EI-6507-01 10 5199910 5199910 G A AKR1CL1 3'Flank 0.26 TCGA-EI-6507-01 10 55626441 55626441 G A PCDH15 Silent p.D1226D 0.28 TCGA-EI-6507-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.25 TCGA-EI-6507-01 10 61865700 61865701 - T ANK3 Frame_Shift_Ins p.N1097Kfs*2 0.20 TCGA-EI-6507-01 10 63845642 63845642 C T ARID5B Missense_Mutation p.P461S 0.28 tolerated(0.48) benign(0.008) TCGA-EI-6507-01 10 6540492 6540492 C A PRKCQ Silent p.T136T 0.19 TCGA-EI-6507-01 10 69991587 69991587 G - ATOH7 5'UTR 0.12 TCGA-EI-6507-01 10 70276587 70276587 G T SLC25A16 Nonsense_Mutation p.C48* 0.08 TCGA-EI-6507-01 10 70652358 70652358 G A STOX1 Missense_Mutation p.G946R 0.19 deleterious(0) benign(0.126) TCGA-EI-6507-01 10 72493710 72493710 G A ADAMTS14 Silent p.A429A 0.24 TCGA-EI-6507-01 10 73039667 73039667 G A UNC5B Missense_Mutation p.A57T 0.21 deleterious(0) probably_damaging(0.95) TCGA-EI-6507-01 10 73051241 73051241 C T UNC5B Silent p.A449A 0.30 TCGA-EI-6507-01 10 73767383 73767383 C T CHST3 Silent p.C198C 0.16 TCGA-EI-6507-01 10 85964307 85964307 G A CDHR1 Missense_Mutation p.A270T 0.15 deleterious(0) probably_damaging(0.992) TCGA-EI-6507-01 10 86230175 86230176 - A CCSER2 Frame_Shift_Ins p.D735Rfs*2 0.20 TCGA-EI-6507-01 10 88703092 88703092 G A MMRN2 Silent p.A483A 0.22 TCGA-EI-6507-01 10 94413684 94413684 T C KIF11 3'UTR 0.30 TCGA-EI-6507-01 10 95445007 95445007 T - FRA10AC1 Frame_Shift_Del p.K207Nfs*2 0.25 TCGA-EI-6507-01 10 97698080 97698080 A G C10orf131 3'UTR 0.26 TCGA-EI-6507-01 10 97787006 97787006 C T CC2D2B Nonsense_Mutation p.R293* 0.12 TCGA-EI-6507-01 10 97916340 97916341 AA - ZNF518A RNA 0.21 TCGA-EI-6507-01 10 99332353 99332354 - G ANKRD2 5'UTR 0.19 TCGA-EI-6507-01 10 99683051 99683051 G A CRTAC1 Silent p.A176A 0.26 TCGA-EI-6507-01 11 102248588 102248588 T C BIRC2 Missense_Mutation p.V541A 0.26 tolerated(0.16) benign(0.325) TCGA-EI-6507-01 11 102738104 102738104 G A MMP12 RNA 0.29 TCGA-EI-6507-01 11 110007988 110007988 G A ZC3H12C Missense_Mutation p.A208T 0.11 tolerated(0.28) benign(0.001) TCGA-EI-6507-01 11 111899620 111899620 C A DLAT Missense_Mutation p.P204H 0.37 deleterious(0.01) possibly_damaging(0.503) TCGA-EI-6507-01 11 113650572 113650572 C A CLDN25 Missense_Mutation p.L19I 0.34 tolerated(0.09) possibly_damaging(0.517) TCGA-EI-6507-01 11 113650938 113650938 G A CLDN25 Missense_Mutation p.A141T 0.18 deleterious(0.01) probably_damaging(1) TCGA-EI-6507-01 11 113853982 113853982 C T HTR3A Missense_Mutation p.S178L 0.22 deleterious(0) probably_damaging(0.977) TCGA-EI-6507-01 11 114400937 114400937 C T NXPE1 Missense_Mutation p.V123I 0.32 tolerated(1) benign(0.009) TCGA-EI-6507-01 11 117074069 117074069 C T TAGLN Missense_Mutation p.P76L 0.23 deleterious(0) probably_damaging(0.956) TCGA-EI-6507-01 11 117389392 117389392 G A DSCAML1 Silent p.G493G 0.27 TCGA-EI-6507-01 11 118773196 118773196 C T BCL9L Missense_Mutation p.R419Q 0.15 probably_damaging(0.998) TCGA-EI-6507-01 11 118882958 118882958 C T CCDC84 Silent p.G226G 0.17 TCGA-EI-6507-01 11 118923452 118923452 C A HYOU1 Missense_Mutation p.R295I 0.32 tolerated(0.21) benign(0.016) TCGA-EI-6507-01 11 119056498 119056498 C A PDZD3 Intron 0.29 TCGA-EI-6507-01 11 119061086 119061086 C A CCDC153 Missense_Mutation p.A186S 0.19 tolerated(0.19) benign(0.222) TCGA-EI-6507-01 11 11986055 11986055 G A DKK3 Missense_Mutation p.P337S 0.24 deleterious_low_confidence(0.04) unknown(0) TCGA-EI-6507-01 11 120008277 120008277 G - TRIM29 Frame_Shift_Del p.R155Gfs*104 0.25 TCGA-EI-6507-01 11 120996473 120996473 A G TECTA Missense_Mutation p.S556G 0.30 tolerated(0.08) benign(0.013) TCGA-EI-6507-01 11 120998520 120998520 G A TECTA Missense_Mutation p.D612N 0.28 tolerated(0.42) benign(0.086) TCGA-EI-6507-01 11 123894346 123894347 - T OR10G9 Frame_Shift_Ins p.L211Sfs*? 0.19 TCGA-EI-6507-01 11 124253130 124253130 A G OR8B2 Missense_Mutation p.V37A 0.27 deleterious_low_confidence(0.04) benign(0.005) TCGA-EI-6507-01 11 124756449 124756449 G A ROBO4 Missense_Mutation p.A902V 0.18 tolerated(1) possibly_damaging(0.483) TCGA-EI-6507-01 11 124857565 124857565 T C CCDC15 Silent p.S481S 0.18 TCGA-EI-6507-01 11 125478128 125478128 T A STT3A Missense_Mutation p.V302D 0.28 deleterious(0.02) possibly_damaging(0.555) TCGA-EI-6507-01 11 1262364 1262364 C T MUC5B Silent p.H1418H 0.28 TCGA-EI-6507-01 11 126299107 126299107 C T KIRREL3 Silent p.E591E 0.26 TCGA-EI-6507-01 11 1271274 1271274 G A MUC5B Silent p.T4388T 0.24 TCGA-EI-6507-01 11 132177684 132177684 C T NTM Missense_Mutation p.P210S 0.26 deleterious(0.02) possibly_damaging(0.747) TCGA-EI-6507-01 11 134212845 134212845 C T GLB1L2 Missense_Mutation p.T95I 0.40 deleterious(0.01) probably_damaging(0.978) TCGA-EI-6507-01 11 17190789 17190789 G A PIK3C2A Missense_Mutation p.A167V 0.23 tolerated_low_confidence(0.14) benign(0.002) TCGA-EI-6507-01 11 17757801 17757801 G A KCNC1 Silent p.G84G 0.23 TCGA-EI-6507-01 11 17801158 17801158 T C KCNC1 Missense_Mutation p.Y554H 0.26 deleterious_low_confidence(0) benign(0.013) TCGA-EI-6507-01 11 18750399 18750399 C T PTPN5 3'UTR 0.20 TCGA-EI-6507-01 11 199942 199942 A G ODF3 Splice_Site p.X226_splice 0.40 TCGA-EI-6507-01 11 2191097 2191097 G A TH Missense_Mutation p.P63L 0.19 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-EI-6507-01 11 26714123 26714123 A G SLC5A12 Silent p.L356L 0.28 TCGA-EI-6507-01 11 28119255 28119255 A - KIF18A Frame_Shift_Del p.F80Lfs*23 0.19 TCGA-EI-6507-01 11 30516910 30516910 T C MPPED2 Missense_Mutation p.T157A 0.11 deleterious(0.02) benign(0.006) TCGA-EI-6507-01 11 3249393 3249393 G A MRGPRE Missense_Mutation p.R212W 0.18 deleterious(0.02) possibly_damaging(0.639) TCGA-EI-6507-01 11 35302521 35302521 G A SLC1A2 Silent p.G438G 0.23 TCGA-EI-6507-01 11 35496275 35496275 G A PAMR1 Nonsense_Mutation p.R133* 0.19 TCGA-EI-6507-01 11 35513593 35513593 G A PAMR1 Nonsense_Mutation p.R127* 0.33 TCGA-EI-6507-01 11 44146398 44146398 A G EXT2 Missense_Mutation p.D301G 0.24 tolerated(0.29) benign(0.085) TCGA-EI-6507-01 11 47431937 47431937 C T SLC39A13 Missense_Mutation p.R98C 0.28 tolerated(0.06) benign(0.056) TCGA-EI-6507-01 11 47434983 47434983 C T SLC39A13 Silent p.A190A 0.33 TCGA-EI-6507-01 11 47698933 47698933 C A AGBL2 Missense_Mutation p.E679D 0.14 deleterious(0.01) probably_damaging(0.979) TCGA-EI-6507-01 11 5080306 5080306 C A OR52E2 Missense_Mutation p.M184I 0.23 tolerated(0.09) possibly_damaging(0.733) TCGA-EI-6507-01 11 5345234 5345234 C A OR51B2 Missense_Mutation p.Q98H 0.27 deleterious(0) benign(0.417) TCGA-EI-6507-01 11 5602883 5602883 C A OR52B6 Silent p.T259T 0.23 TCGA-EI-6507-01 11 57563201 57563201 G A CTNND1 Silent p.T140T 0.28 TCGA-EI-6507-01 11 60183562 60183562 A G MS4A14 Missense_Mutation p.D407G 0.24 tolerated(0.05) benign(0.031) TCGA-EI-6507-01 11 60642643 60642643 C T ZP1 Missense_Mutation p.P566S 0.16 tolerated(0.24) benign(0.01) TCGA-EI-6507-01 11 62066429 62066429 C A SCGB1D4 Missense_Mutation p.Q18H 0.26 tolerated(0.06) possibly_damaging(0.735) TCGA-EI-6507-01 11 6291979 6291979 G T CCKBR Missense_Mutation p.G253C 0.24 tolerated(0.07) benign(0.007) TCGA-EI-6507-01 11 63176247 63176247 G T SLC22A9 Missense_Mutation p.W499C 0.31 deleterious(0) probably_damaging(0.94) TCGA-EI-6507-01 11 63964984 63964984 C T STIP1 Silent p.G273G 0.15 TCGA-EI-6507-01 11 63992064 63992064 C T TRPT1 Silent p.T153T 0.22 TCGA-EI-6507-01 11 63994436 63994436 G A NUDT22 Silent p.Q104Q 0.22 TCGA-EI-6507-01 11 64074667 64074667 G A ESRRA Missense_Mutation p.V6M 0.27 tolerated_low_confidence(0.1) benign(0.005) TCGA-EI-6507-01 11 64126916 64126916 C T RPS6KA4 Missense_Mutation p.T41M 0.09 deleterious(0) probably_damaging(0.915) TCGA-EI-6507-01 11 6417179 6417179 A G APBB1 Missense_Mutation p.L599P 0.28 deleterious(0) probably_damaging(0.993) TCGA-EI-6507-01 11 64645908 64645908 C T EHD1 Missense_Mutation p.R10H 0.26 tolerated(0.09) benign(0.157) TCGA-EI-6507-01 11 64702645 64702645 A G GPHA2 Missense_Mutation p.F36L 0.08 tolerated(0.18) benign(0.409) TCGA-EI-6507-01 11 64702829 64702829 C T GPHA2 Splice_Site p.X35_splice 0.38 TCGA-EI-6507-01 11 6477620 6477620 G A TRIM3 Missense_Mutation p.R446C 0.34 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 11 64981481 64981481 C - CAPN1 3'Flank 0.24 TCGA-EI-6507-01 11 64981901 64981901 G A CAPN1 3'Flank 0.17 TCGA-EI-6507-01 11 65481116 65481116 C - KAT5 Frame_Shift_Del p.P199Rfs*47 0.17 TCGA-EI-6507-01 11 65638093 65638093 C T EFEMP2 Missense_Mutation p.R135H 0.23 deleterious(0.05) possibly_damaging(0.908) TCGA-EI-6507-01 11 6568740 6568740 C T DNHD1 Nonsense_Mutation p.R2191* 0.28 TCGA-EI-6507-01 11 65688868 65688868 G A DRAP1 Missense_Mutation p.A194T 0.20 tolerated_low_confidence(0.15) unknown(0) TCGA-EI-6507-01 11 65726679 65726679 G T SART1 5'Flank 0.26 TCGA-EI-6507-01 11 66052190 66052190 C T YIF1A Missense_Mutation p.R267H 0.21 tolerated(0.1) benign(0.032) TCGA-EI-6507-01 11 66102239 66102239 C T RIN1 Missense_Mutation p.R344Q 0.32 tolerated(0.14) benign(0.037) TCGA-EI-6507-01 11 6622647 6622648 - G RRP8 Frame_Shift_Ins p.T217Hfs*16 0.21 TCGA-EI-6507-01 11 66249709 66249709 G A DPP3 Missense_Mutation p.G13D 0.32 tolerated(0.19) possibly_damaging(0.638) TCGA-EI-6507-01 11 6633003 6633003 A G TAF10 Silent p.S93S 0.17 TCGA-EI-6507-01 11 66360164 66360164 T - CCDC87 Frame_Shift_Del p.N108Tfs*15 0.28 TCGA-EI-6507-01 11 66391769 66391769 G A RBM14 Missense_Mutation p.R141H 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-EI-6507-01 11 66595782 66595782 C T C11orf80 Missense_Mutation p.R539C 0.32 tolerated(0.18) benign(0) TCGA-EI-6507-01 11 66616566 66616566 G A PC Missense_Mutation p.A1114V 0.19 deleterious(0) probably_damaging(0.964) TCGA-EI-6507-01 11 66811230 66811230 A G SYT12 Missense_Mutation p.N248S 0.21 tolerated(0.23) benign(0.052) TCGA-EI-6507-01 11 67191150 67191150 C T CARNS1 Missense_Mutation p.A644V 0.36 tolerated(0.17) benign(0.062) TCGA-EI-6507-01 11 67401769 67401769 C T TBX10 Missense_Mutation p.R147H 0.26 deleterious(0.01) benign(0.124) TCGA-EI-6507-01 11 69063494 69063494 G A MYEOV Missense_Mutation p.E193K 0.27 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-EI-6507-01 11 70202304 70202304 C A PPFIA1 Silent p.A842A 0.23 TCGA-EI-6507-01 11 70277323 70277323 G A CTTN Silent p.T364T 0.24 TCGA-EI-6507-01 11 70333475 70333475 C A SHANK2 Missense_Mutation p.A976S 0.24 tolerated(0.26) benign(0.003) TCGA-EI-6507-01 11 71948748 71948748 C - INPPL1 Frame_Shift_Del p.R1156Gfs*46 0.48 TCGA-EI-6507-01 11 72028249 72028249 G A CLPB Missense_Mutation p.R327W 0.28 deleterious(0) possibly_damaging(0.889) TCGA-EI-6507-01 11 72437975 72437975 C T ARAP1 Missense_Mutation p.A67T 0.39 tolerated(0.54) benign(0.015) TCGA-EI-6507-01 11 7614411 7614411 C T PPFIBP2 Missense_Mutation p.R110C 0.19 deleterious(0) probably_damaging(0.997) TCGA-EI-6507-01 11 811719 811719 C T RPLP2 Intron 0.23 TCGA-EI-6507-01 11 82878210 82878210 C T PCF11 Missense_Mutation p.H621Y 0.30 deleterious(0) probably_damaging(0.92) TCGA-EI-6507-01 11 9187458 9187458 G A DENND5A Silent p.S736S 0.26 TCGA-EI-6507-01 11 92532199 92532199 T A FAT3 Missense_Mutation p.V2007D 0.21 possibly_damaging(0.892) TCGA-EI-6507-01 11 92534950 92534950 T G FAT3 Missense_Mutation p.F2924C 0.14 probably_damaging(0.999) TCGA-EI-6507-01 11 92715053 92715053 C T MTNR1B Missense_Mutation p.R222C 0.22 tolerated(0.12) benign(0.262) TCGA-EI-6507-01 11 93104239 93104240 - A CCDC67 Frame_Shift_Ins p.Q197Tfs*9 0.23 TCGA-EI-6507-01 11 96098144 96098144 C A CCDC82 Missense_Mutation p.Q460H 0.19 deleterious(0) probably_damaging(0.982) TCGA-EI-6507-01 11 96098232 96098232 C T CCDC82 Missense_Mutation p.R431H 0.13 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 11 96123698 96123698 C A JRKL 5'UTR 0.11 TCGA-EI-6507-01 12 103699965 103699965 C T C12orf42 Missense_Mutation p.A140T 0.18 tolerated(0.63) benign(0.001) TCGA-EI-6507-01 12 10373231 10373231 C T GABARAPL1 Intron 0.15 TCGA-EI-6507-01 12 10787270 10787270 C T STYK1 5'UTR 0.21 TCGA-EI-6507-01 12 109523555 109523555 G A USP30 Missense_Mutation p.R458Q 0.39 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 12 109704163 109704163 C T ACACB Missense_Mutation p.T2458I 0.33 deleterious_low_confidence(0) benign(0.221) TCGA-EI-6507-01 12 10978281 10978282 - A TAS2R10 Frame_Shift_Ins p.L196Ffs*104 0.20 TCGA-EI-6507-01 12 109972419 109972419 C T UBE3B Silent p.S1013S 0.16 TCGA-EI-6507-01 12 110344435 110344435 A - TCHP Frame_Shift_Del p.K174Nfs*26 0.37 TCGA-EI-6507-01 12 110989689 110989689 C T PPTC7 Missense_Mutation p.R103H 0.17 deleterious(0.02) possibly_damaging(0.645) TCGA-EI-6507-01 12 112321565 112321565 G A MAPKAPK5 Missense_Mutation p.V281M 0.17 deleterious(0) probably_damaging(0.989) TCGA-EI-6507-01 12 117652999 117652999 G A NOS1 3'Flank 0.46 TCGA-EI-6507-01 12 121880622 121880622 G A KDM2B Silent p.N874N 0.18 TCGA-EI-6507-01 12 122219074 122219074 C T RHOF Missense_Mutation p.R84Q 0.37 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 12 122242658 122242658 C - SETD1B Frame_Shift_Del p.H8Tfs*27 0.57 TCGA-EI-6507-01 12 122750985 122750985 C A VPS33A 5'UTR 0.47 TCGA-EI-6507-01 12 123001814 123001814 G A RSRC2 Missense_Mutation p.H188Y 0.21 tolerated_low_confidence(0.31) unknown(0) TCGA-EI-6507-01 12 123424719 123424719 C - ABCB9 Frame_Shift_Del p.G561Afs*21 0.34 TCGA-EI-6507-01 12 130184836 130184836 C - TMEM132D Frame_Shift_Del p.E163Rfs*6 0.21 TCGA-EI-6507-01 12 132471280 132471280 A G EP400 Silent p.P717P 0.35 TCGA-EI-6507-01 12 132624675 132624675 G A DDX51 Silent p.D581D 0.31 TCGA-EI-6507-01 12 15702113 15702113 G A PTPRO Missense_Mutation p.S797N 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-EI-6507-01 12 21175856 21175856 A - SLCO1B7 Frame_Shift_Del p.T139Pfs*3 0.15 TCGA-EI-6507-01 12 21446892 21446892 G A SLCO1A2 Missense_Mutation p.T475M 0.35 tolerated(0.05) benign(0.18) TCGA-EI-6507-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.48 deleterious(0) benign(0.361) TCGA-EI-6507-01 12 2676928 2676928 C T CACNA1C Silent p.C621C 0.08 TCGA-EI-6507-01 12 27149701 27149701 A - TM7SF3 Frame_Shift_Del p.F164Lfs*6 0.26 TCGA-EI-6507-01 12 3726166 3726166 C T EFCAB4B Missense_Mutation p.A689T 0.13 deleterious(0.02) probably_damaging(1) TCGA-EI-6507-01 12 40704299 40704299 C T LRRK2 Missense_Mutation p.R1462C 0.20 tolerated(0.15) possibly_damaging(0.518) TCGA-EI-6507-01 12 41966505 41966505 G T PDZRN4 Nonsense_Mutation p.E642* 0.21 TCGA-EI-6507-01 12 42729723 42729723 T C PPHLN1 Missense_Mutation p.Y7H 0.24 tolerated(0.16) benign(0.039) TCGA-EI-6507-01 12 43821126 43821126 G A ADAMTS20 Silent p.Y1364Y 0.70 TCGA-EI-6507-01 12 48174344 48174344 T C SLC48A1 3'UTR 0.45 TCGA-EI-6507-01 12 48578090 48578090 G - C12orf68 Frame_Shift_Del p.A64Pfs*30 0.14 TCGA-EI-6507-01 12 4919445 4919445 C A KCNA6 Missense_Mutation p.L80M 0.48 tolerated(0.16) probably_damaging(0.999) TCGA-EI-6507-01 12 49445485 49445485 G A KMT2D Missense_Mutation p.R661C 0.17 unknown(0) TCGA-EI-6507-01 12 49745360 49745360 G A DNAJC22 3'UTR 0.31 TCGA-EI-6507-01 12 51883718 51883718 A G SLC4A8 Missense_Mutation p.M895V 0.41 deleterious(0) benign(0.021) TCGA-EI-6507-01 12 52159833 52159833 T - SCN8A Intron 0.26 TCGA-EI-6507-01 12 52387961 52387961 C T ACVR1B 3'UTR 0.36 TCGA-EI-6507-01 12 52714899 52714899 C - KRT83 Frame_Shift_Del p.G74Afs*27 0.18 TCGA-EI-6507-01 12 52771873 52771873 C T KRT84 Missense_Mutation p.R583H 0.23 deleterious(0.05) unknown(0) TCGA-EI-6507-01 12 52865494 52865494 G A KRT6C Missense_Mutation p.R260C 0.38 deleterious(0.02) probably_damaging(0.993) TCGA-EI-6507-01 12 53012018 53012018 C T KRT73 Silent p.S97S 0.20 TCGA-EI-6507-01 12 53461435 53461435 C T SPRYD3 Missense_Mutation p.A300T 0.18 deleterious(0.02) possibly_damaging(0.875) TCGA-EI-6507-01 12 53683916 53683916 G A ESPL1 Missense_Mutation p.V1721M 0.13 tolerated(0.2) benign(0.065) TCGA-EI-6507-01 12 53722440 53722440 G T SP7 Silent p.G262G 0.47 TCGA-EI-6507-01 12 53877706 53877708 CCT - MAP3K12 In_Frame_Del p.R449del 0.27 TCGA-EI-6507-01 12 54796041 54796041 C T ITGA5 Missense_Mutation p.G686S 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 12 55356689 55356689 C T TESPA1 Silent p.Q331Q 0.44 TCGA-EI-6507-01 12 56194674 56194674 C A SARNP Missense_Mutation p.E49D 0.20 tolerated(0.43) benign(0.011) TCGA-EI-6507-01 12 56359812 56359812 G T PMEL 5'Flank 0.22 TCGA-EI-6507-01 12 56477631 56477631 T G ERBB3 Missense_Mutation p.M60R 0.42 deleterious(0) probably_damaging(0.99) TCGA-EI-6507-01 12 56563457 56563457 C T SMARCC2 Silent p.E826E 0.18 TCGA-EI-6507-01 12 57922311 57922311 C - MBD6 Frame_Shift_Del p.P931Lfs*15 0.16 TCGA-EI-6507-01 12 59267964 59267964 C A LRIG3 Missense_Mutation p.K996N 0.19 tolerated_low_confidence(0.19) benign(0.003) TCGA-EI-6507-01 12 6443411 6443411 C A TNFRSF1A Splice_Site p.X14_splice 0.38 TCGA-EI-6507-01 12 64878186 64878186 C T TBK1 Silent p.L366L 0.48 TCGA-EI-6507-01 12 7551178 7551178 T C CD163L1 Missense_Mutation p.K471E 0.39 tolerated(0.97) benign(0.004) TCGA-EI-6507-01 12 77419585 77419585 C T E2F7 Missense_Mutation p.G773D 0.44 tolerated(0.08) possibly_damaging(0.543) TCGA-EI-6507-01 12 78516075 78516075 C A NAV3 Missense_Mutation p.L1369I 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6507-01 12 80214607 80214607 C A PPP1R12A Missense_Mutation p.S354I 0.14 deleterious(0) probably_damaging(0.996) TCGA-EI-6507-01 12 80838539 80838539 G A PTPRQ Missense_Mutation p.V25I 0.40 tolerated(0.5) benign(0.003) TCGA-EI-6507-01 12 8902559 8902559 C T RIMKLB Missense_Mutation p.R93C 0.15 tolerated(0.1) benign(0.402) TCGA-EI-6507-01 12 91365683 91365683 C T EPYC Missense_Mutation p.R199H 0.35 deleterious(0.04) possibly_damaging(0.757) TCGA-EI-6507-01 12 96660963 96660963 G A ELK3 3'UTR 0.35 TCGA-EI-6507-01 12 98849448 98849449 - C SLC9A7P1 RNA 0.31 TCGA-EI-6507-01 12 9906143 9906144 - T CD69 Frame_Shift_Ins p.N178Kfs*10 0.28 TCGA-EI-6507-01 13 103271185 103271185 C T TPP2 Silent p.G203G 0.30 TCGA-EI-6507-01 13 110828990 110828990 C T COL4A1 Missense_Mutation p.G984E 0.22 benign(0.172) TCGA-EI-6507-01 13 114088119 114088119 C T ADPRHL1 Missense_Mutation p.R148Q 0.11 tolerated(1) benign(0.136) TCGA-EI-6507-01 13 114325896 114325896 G A GRK1 Missense_Mutation p.G304S 0.34 deleterious(0) probably_damaging(0.984) TCGA-EI-6507-01 13 20426250 20426250 A G ZMYM5 Missense_Mutation p.M24T 0.20 deleterious_low_confidence(0) benign(0.402) TCGA-EI-6507-01 13 21170297 21170297 A - IFT88 Frame_Shift_Del p.I147* 0.21 TCGA-EI-6507-01 13 21752173 21752173 T - MRP63 3'UTR 0.21 TCGA-EI-6507-01 13 24466103 24466103 C A C1QTNF9B Missense_Mutation p.M109I 0.12 tolerated(0.44) benign(0.001) TCGA-EI-6507-01 13 32906657 32906657 G A BRCA2 Missense_Mutation p.V348M 0.26 tolerated(1) possibly_damaging(0.451) TCGA-EI-6507-01 13 33635594 33635594 A - KL Frame_Shift_Del p.K795Sfs*2 0.11 TCGA-EI-6507-01 13 36348762 36348762 C T DCLK1 3'UTR 0.19 TCGA-EI-6507-01 13 37006671 37006671 C T CCNA1 5'UTR 0.31 TCGA-EI-6507-01 13 41341161 41341161 T - MRPS31 Frame_Shift_Del p.N54Ifs*12 0.21 TCGA-EI-6507-01 13 46085968 46085969 AG - COG3 Frame_Shift_Del p.E597Vfs*10 0.20 TCGA-EI-6507-01 13 46287374 46287374 G A SPERT Missense_Mutation p.A72T 0.25 tolerated_low_confidence(0.11) benign(0.032) TCGA-EI-6507-01 13 46287532 46287532 C T SPERT Silent p.S124S 0.24 TCGA-EI-6507-01 13 47466708 47466708 G A HTR2A Missense_Mutation p.P144S 0.17 deleterious(0) probably_damaging(0.968) TCGA-EI-6507-01 13 50275977 50275977 C G KPNA3 Missense_Mutation p.D509H 0.10 tolerated(0.06) possibly_damaging(0.603) TCGA-EI-6507-01 13 50587560 50587560 A - TRIM13 3'Flank 0.19 TCGA-EI-6507-01 13 52639603 52639603 G A NEK5 Silent p.S689S 0.22 TCGA-EI-6507-01 13 52707309 52707309 C T NEK3 Missense_Mutation p.R480Q 0.17 tolerated(0.21) benign(0.011) TCGA-EI-6507-01 13 78493855 78493855 G A EDNRB 5'UTR 0.20 TCGA-EI-6507-01 13 84454934 84454934 C T SLITRK1 Missense_Mutation p.G237S 0.21 tolerated(0.05) probably_damaging(1) TCGA-EI-6507-01 13 88331739 88331739 G A SLITRK5 3'UTR 0.22 TCGA-EI-6507-01 13 95257672 95257672 T A GPR180 Missense_Mutation p.I58N 0.31 deleterious(0) possibly_damaging(0.526) TCGA-EI-6507-01 13 99462522 99462522 C A DOCK9 Missense_Mutation p.E1718D 0.24 deleterious(0) probably_damaging(0.997) TCGA-EI-6507-01 14 102481636 102481636 T C DYNC1H1 Silent p.D2403D 0.23 TCGA-EI-6507-01 14 105612105 105612105 C T JAG2 Missense_Mutation p.R972H 0.33 tolerated(0.17) benign(0.439) TCGA-EI-6507-01 14 106306801 106306801 G T IGHD Missense_Mutation p.P343Q 0.33 tolerated(0.08) probably_damaging(0.958) TCGA-EI-6507-01 14 106322025 106322025 T C IGHM Missense_Mutation p.N100S 0.30 tolerated(0.61) benign(0.001) TCGA-EI-6507-01 14 20864104 20864104 G A TEP1 Missense_Mutation p.S555L 0.16 deleterious(0.03) benign(0.141) TCGA-EI-6507-01 14 23315106 23315106 C T MMP14 Missense_Mutation p.A536V 0.46 tolerated(0.21) benign(0.095) TCGA-EI-6507-01 14 23532747 23532747 C A ACIN1 Nonsense_Mutation p.E937* 0.22 TCGA-EI-6507-01 14 23816811 23816811 G A SLC22A17 Silent p.T358T 0.24 TCGA-EI-6507-01 14 23847570 23847570 A G CMTM5 Missense_Mutation p.I47V 0.29 tolerated(0.25) benign(0.004) TCGA-EI-6507-01 14 23869992 23869992 C T MYH6 Missense_Mutation p.A446T 0.17 deleterious(0.02) benign(0.003) TCGA-EI-6507-01 14 23876383 23876383 C T MYH6 Missense_Mutation p.R17H 0.10 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 14 23945248 23945248 A T NGDN Missense_Mutation p.E144V 0.26 tolerated(0.16) benign(0.157) TCGA-EI-6507-01 14 24877294 24877294 C T NYNRIN Nonsense_Mutation p.R140* 0.20 TCGA-EI-6507-01 14 29237212 29237212 C T FOXG1 Missense_Mutation p.P243S 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 14 29261325 29261326 - A C14orf23 Frame_Shift_Ins p.T122Nfs*15 0.13 TCGA-EI-6507-01 14 34904436 34904436 T C SPTSSA Missense_Mutation p.I63V 0.26 tolerated(0.65) benign(0.235) TCGA-EI-6507-01 14 36768181 36768181 C A MBIP 3'UTR 0.24 TCGA-EI-6507-01 14 38016190 38016191 AC - MIPOL1 3'UTR 0.16 TCGA-EI-6507-01 14 38061715 38061715 C T FOXA1 Missense_Mutation p.A92T 0.33 tolerated(0.34) possibly_damaging(0.57) TCGA-EI-6507-01 14 38678867 38678867 G A SSTR1 Silent p.T91T 0.25 TCGA-EI-6507-01 14 61186633 61186633 T C SIX4 Missense_Mutation p.D465G 0.25 deleterious(0) benign(0.022) TCGA-EI-6507-01 14 61517247 61517247 T A SLC38A6 Missense_Mutation p.L315I 0.31 deleterious(0.04) benign(0.133) TCGA-EI-6507-01 14 64465637 64465637 A T SYNE2 Missense_Mutation p.D1120V 0.27 benign(0.094) TCGA-EI-6507-01 14 64935520 64935520 A - AKAP5 Frame_Shift_Del p.R138Gfs*8 0.25 TCGA-EI-6507-01 14 64936452 64936452 C T AKAP5 3'UTR 0.20 TCGA-EI-6507-01 14 65259806 65259806 C T SPTB Missense_Mutation p.A859T 0.30 tolerated(0.1) probably_damaging(0.981) TCGA-EI-6507-01 14 68274397 68274397 G A ZFYVE26 Missense_Mutation p.R202W 0.26 deleterious(0.01) benign(0.409) TCGA-EI-6507-01 14 69349741 69349741 G A ACTN1 Missense_Mutation p.A556V 0.28 tolerated(0.07) benign(0.128) TCGA-EI-6507-01 14 71575352 71575352 G A PCNX Silent p.S2111S 0.21 TCGA-EI-6507-01 14 72055079 72055079 A C SIPA1L1 Silent p.R164R 0.23 TCGA-EI-6507-01 14 73685863 73685863 C T PSEN1 Missense_Mutation p.L424F 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 14 73965799 73965799 T C HEATR4 Missense_Mutation p.K778E 0.25 tolerated(0.08) possibly_damaging(0.786) TCGA-EI-6507-01 14 74196464 74196464 G - ELMSAN1 Frame_Shift_Del p.I659Sfs*45 0.27 TCGA-EI-6507-01 14 74420233 74420233 G A COQ6 Missense_Mutation p.V87I 0.19 deleterious(0.02) benign(0.272) TCGA-EI-6507-01 14 75386612 75386612 C T RPS6KL1 Missense_Mutation p.R109Q 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 14 76455320 76455320 G A IFT43 Silent p.E49E 0.26 TCGA-EI-6507-01 14 76905887 76905887 G A ESRRB Missense_Mutation p.G64D 0.25 deleterious(0.04) benign(0.15) TCGA-EI-6507-01 14 77491802 77491802 G A IRF2BPL Silent p.G778G 0.23 TCGA-EI-6507-01 14 80993288 80993288 A T CEP128 Nonsense_Mutation p.Y999* 0.36 TCGA-EI-6507-01 14 86089235 86089235 C T FLRT2 Silent p.H459H 0.34 TCGA-EI-6507-01 14 91739787 91739787 G A CCDC88C Silent p.L1757L 0.27 TCGA-EI-6507-01 14 92461696 92461696 C A TRIP11 Nonsense_Mutation p.E1686* 0.23 TCGA-EI-6507-01 14 92471812 92471812 C A TRIP11 Missense_Mutation p.Q836H 0.22 deleterious(0.01) possibly_damaging(0.784) TCGA-EI-6507-01 14 94079411 94079411 C A UNC79 Missense_Mutation p.F1164L 0.30 deleterious(0.03) probably_damaging(0.992) TCGA-EI-6507-01 14 94594997 94594997 G A IFI27L2 Missense_Mutation p.A18V 0.21 deleterious(0.01) unknown(0) TCGA-EI-6507-01 14 95582025 95582025 G A DICER1 Missense_Mutation p.T629M 0.27 deleterious(0) probably_damaging(0.987) TCGA-EI-6507-01 14 96136856 96136856 T - TCL6 RNA 0.24 TCGA-EI-6507-01 14 99640394 99640394 C T BCL11B 3'UTR 0.35 TCGA-EI-6507-01 14 99697797 99697797 G A BCL11B Silent p.G175G 0.43 TCGA-EI-6507-01 15 23686445 23686445 G A GOLGA6L2 Missense_Mutation p.R393W 0.25 possibly_damaging(0.835) TCGA-EI-6507-01 15 27182470 27182470 G T GABRA5 Missense_Mutation p.S240I 0.32 tolerated(0.25) possibly_damaging(0.791) TCGA-EI-6507-01 15 28419609 28419609 G A HERC2 Missense_Mutation p.A3330V 0.10 benign(0.014) TCGA-EI-6507-01 15 31822970 31822970 G A OTUD7A Missense_Mutation p.R198W 0.26 deleterious(0) possibly_damaging(0.895) TCGA-EI-6507-01 15 32929754 32929754 C G ARHGAP11A Missense_Mutation p.S927C 0.31 deleterious(0) probably_damaging(0.962) TCGA-EI-6507-01 15 33026720 33026720 T C GREM1 3'UTR 0.19 TCGA-EI-6507-01 15 33261041 33261041 G - FMN1 Frame_Shift_Del p.P731Hfs*29 0.23 TCGA-EI-6507-01 15 34396124 34396124 G A PGBD4 Silent p.V464V 0.17 TCGA-EI-6507-01 15 34640224 34640224 C A NUTM1 Missense_Mutation p.P24Q 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-EI-6507-01 15 40866329 40866329 C T RPUSD2 Missense_Mutation p.R503W 0.25 deleterious(0) possibly_damaging(0.88) TCGA-EI-6507-01 15 41247727 41247727 G A CHAC1 Missense_Mutation p.A184T 0.21 tolerated(0.06) possibly_damaging(0.764) TCGA-EI-6507-01 15 42046641 42046642 TG - MGA Frame_Shift_Del p.V2340Rfs*4 0.15 TCGA-EI-6507-01 15 42145484 42145484 A C SPTBN5 Missense_Mutation p.V3381G 0.25 benign(0.394) TCGA-EI-6507-01 15 42701572 42701574 AGG - CAPN3 In_Frame_Del p.G663del 0.18 TCGA-EI-6507-01 15 42731797 42731797 C - ZNF106 Frame_Shift_Del p.S1304Lfs*9 0.10 TCGA-EI-6507-01 15 43568766 43568766 G T TGM7 Missense_Mutation p.L674I 0.20 tolerated(1) possibly_damaging(0.872) TCGA-EI-6507-01 15 43720315 43720315 G A TP53BP1 Missense_Mutation p.R1243C 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 15 43831689 43831689 G A PPIP5K1 Missense_Mutation p.R1160C 0.31 deleterious_low_confidence(0) benign(0.002) TCGA-EI-6507-01 15 45457082 45457082 C T DUOX1 Missense_Mutation p.H1547Y 0.23 deleterious(0) possibly_damaging(0.881) TCGA-EI-6507-01 15 49907433 49907433 C T FAM227B 5'UTR 0.39 TCGA-EI-6507-01 15 55971556 55971556 G T PRTG Missense_Mutation p.P354H 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 15 56385803 56385803 T C RFX7 Missense_Mutation p.N1375D 0.13 tolerated_low_confidence(0.06) benign(0.158) TCGA-EI-6507-01 15 56959017 56959017 G A ZNF280D Silent p.N571N 0.25 TCGA-EI-6507-01 15 60768348 60768349 - T NARG2 Frame_Shift_Ins p.N20Kfs*4 0.16 TCGA-EI-6507-01 15 64048879 64048879 G A HERC1 Silent p.G430G 0.17 TCGA-EI-6507-01 15 70345690 70345690 C T TLE3 Missense_Mutation p.G620E 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 15 70987400 70987400 G A UACA Missense_Mutation p.A86V 0.27 tolerated(0.22) benign(0.118) TCGA-EI-6507-01 15 72958434 72958434 C - GOLGA6B Frame_Shift_Del p.Q642Rfs*15 0.08 TCGA-EI-6507-01 15 74426457 74426457 G A ISLR2 Silent p.A454A 0.22 TCGA-EI-6507-01 15 74703249 74703249 C T SEMA7A Missense_Mutation p.A573T 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 15 74836313 74836313 G A ARID3B Silent p.Q12Q 0.34 TCGA-EI-6507-01 15 75116785 75116785 C T LMAN1L Nonsense_Mutation p.Q473* 0.18 TCGA-EI-6507-01 15 75132878 75132878 C T ULK3 Missense_Mutation p.A192T 0.09 deleterious(0.01) possibly_damaging(0.71) TCGA-EI-6507-01 15 77339191 77339191 C T TSPAN3 Missense_Mutation p.G250R 0.18 deleterious_low_confidence(0) benign(0.026) TCGA-EI-6507-01 15 79589291 79589291 C T ANKRD34C 3'UTR 0.27 TCGA-EI-6507-01 15 82422829 82422829 G T EFTUD1 Missense_Mutation p.S1083Y 0.27 tolerated(0.14) benign(0.168) TCGA-EI-6507-01 15 84241320 84241320 A G SH3GL3 Missense_Mutation p.N112S 0.31 tolerated(0.73) benign(0) TCGA-EI-6507-01 15 88420064 88420064 G A NTRK3 3'UTR 0.18 TCGA-EI-6507-01 15 89422248 89422248 T G HAPLN3 Missense_Mutation p.H249P 0.27 deleterious(0.03) probably_damaging(0.982) TCGA-EI-6507-01 15 89448988 89448988 C A MFGE8 Nonsense_Mutation p.G229* 0.24 TCGA-EI-6507-01 15 90163022 90163022 C T TICRR Missense_Mutation p.P1035S 0.27 deleterious(0.05) possibly_damaging(0.511) TCGA-EI-6507-01 15 91421496 91421496 C T FURIN Missense_Mutation p.R268C 0.27 deleterious(0.05) benign(0.03) TCGA-EI-6507-01 15 91424956 91424956 C T FURIN Missense_Mutation p.R745W 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.723) TCGA-EI-6507-01 15 91434219 91434219 C A FES Missense_Mutation p.P443Q 0.32 deleterious(0.02) benign(0.298) TCGA-EI-6507-01 16 11220013 11220013 C - CLEC16A Intron 0.23 TCGA-EI-6507-01 16 11984921 11984921 A T GSPT1 Silent p.T258T 0.27 TCGA-EI-6507-01 16 1254137 1254137 G A CACNA1H Silent p.P710P 0.29 TCGA-EI-6507-01 16 13328910 13328910 T C SHISA9 Missense_Mutation p.Y307H 0.20 tolerated(0.1) probably_damaging(0.938) TCGA-EI-6507-01 16 1551437 1551437 T C TELO2 Missense_Mutation p.L433P 0.24 tolerated(0.25) possibly_damaging(0.514) TCGA-EI-6507-01 16 15704938 15704938 A T KIAA0430 Silent p.T1215T 0.26 TCGA-EI-6507-01 16 15808860 15808860 C T MYH11 Missense_Mutation p.A1905T 0.24 probably_damaging(1) TCGA-EI-6507-01 16 1841430 1841430 G C IGFALS Missense_Mutation p.A368G 0.31 tolerated(0.58) benign(0.006) TCGA-EI-6507-01 16 18538921 18538921 C T NOMO2 Missense_Mutation p.R611H 0.23 deleterious(0.03) benign(0.163) TCGA-EI-6507-01 16 19195021 19195021 G A SYT17 Missense_Mutation p.S168N 0.25 tolerated(0.18) benign(0.002) TCGA-EI-6507-01 16 2110791 2110791 G A TSC2 Missense_Mutation p.E366K 0.09 tolerated(0.06) probably_damaging(0.993) TCGA-EI-6507-01 16 21289437 21289437 C - CRYM Frame_Shift_Del p.V46Cfs*7 0.25 TCGA-EI-6507-01 16 21693081 21693081 C A OTOA Missense_Mutation p.L68M 0.23 tolerated_low_confidence(0.27) possibly_damaging(0.779) TCGA-EI-6507-01 16 226721 226721 G A HBA1 Silent p.V2V 0.13 TCGA-EI-6507-01 16 2326667 2326667 G A ABCA3 3'UTR 0.20 TCGA-EI-6507-01 16 23481450 23481450 C A GGA2 Missense_Mutation p.G496V 0.32 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 16 24582954 24582954 A - RBBP6 Frame_Shift_Del p.G1525Efs*37 0.17 TCGA-EI-6507-01 16 27455913 27455913 C - IL21R Frame_Shift_Del p.L188Wfs*43 0.19 TCGA-EI-6507-01 16 28841307 28841307 G A ATXN2L Missense_Mutation p.R321H 0.12 deleterious(0.02) probably_damaging(0.984) TCGA-EI-6507-01 16 29912629 29912629 G - ASPHD1 Frame_Shift_Del p.G114Vfs*32 0.26 TCGA-EI-6507-01 16 30594477 30594477 G A ZNF785 Missense_Mutation p.R208C 0.27 tolerated(0.2) benign(0.004) TCGA-EI-6507-01 16 30793749 30793749 C T ZNF629 Missense_Mutation p.A634T 0.29 tolerated(0.2) benign(0.014) TCGA-EI-6507-01 16 30846351 30846351 G A BCL7C Missense_Mutation p.A216V 0.24 tolerated_low_confidence(0.06) benign(0) TCGA-EI-6507-01 16 31092323 31092323 C A ZNF646 Missense_Mutation p.L1560M 0.11 tolerated(0.13) possibly_damaging(0.776) TCGA-EI-6507-01 16 31371370 31371370 G A ITGAX Missense_Mutation p.A231T 0.15 deleterious(0) probably_damaging(0.996) TCGA-EI-6507-01 16 315055 315055 G A ITFG3 3'UTR 0.47 TCGA-EI-6507-01 16 3614435 3614435 C T NLRC3 Missense_Mutation p.G215D 0.19 tolerated(0.5) benign(0.219) TCGA-EI-6507-01 16 3801731 3801731 G A CREBBP Nonsense_Mutation p.Q1259* 0.36 TCGA-EI-6507-01 16 4393260 4393260 G A PAM16 Silent p.G12G 0.42 TCGA-EI-6507-01 16 50332842 50332842 C T ADCY7 Missense_Mutation p.L326F 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 16 55519290 55519290 A G MMP2 Silent p.G203G 0.21 TCGA-EI-6507-01 16 57741449 57741449 C T CCDC135 Silent p.R312R 0.21 TCGA-EI-6507-01 16 58073969 58073969 C T MMP15 Missense_Mutation p.P211S 0.34 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6507-01 16 58545393 58545393 G T NDRG4 Silent p.V363V 0.21 TCGA-EI-6507-01 16 597763 597763 C A CAPN15 Missense_Mutation p.R309S 0.23 tolerated_low_confidence(0.38) benign(0.004) TCGA-EI-6507-01 16 65016148 65016148 C T CDH11 Silent p.V352V 0.26 TCGA-EI-6507-01 16 66824895 66824897 AAT - CCDC79 In_Frame_Del p.L20del 0.15 TCGA-EI-6507-01 16 67859872 67859872 T C TSNAXIP1 Missense_Mutation p.L292P 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 16 67862654 67862654 G A CENPT Missense_Mutation p.A458V 0.18 deleterious(0.01) possibly_damaging(0.453) TCGA-EI-6507-01 16 68021797 68021797 G T DPEP2 Silent p.V388V 0.20 TCGA-EI-6507-01 16 70177495 70177495 C A PDPR Missense_Mutation p.T563N 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 16 71570593 71570593 A - CHST4 Frame_Shift_Del p.M7* 0.10 TCGA-EI-6507-01 16 72110329 72110329 G A HPR Silent p.T132T 0.29 TCGA-EI-6507-01 16 72993416 72993416 C T ZFHX3 Missense_Mutation p.G210D 0.28 possibly_damaging(0.792) TCGA-EI-6507-01 16 83999526 83999526 G - OSGIN1 Frame_Shift_Del p.D451Tfs*4 0.15 TCGA-EI-6507-01 16 84199422 84199422 C T DNAAF1 Silent p.Y299Y 0.19 TCGA-EI-6507-01 16 84695234 84695235 - G KLHL36 Frame_Shift_Ins p.H452Pfs*42 0.24 TCGA-EI-6507-01 16 85699599 85699599 G A GSE1 Missense_Mutation p.A926T 0.22 tolerated(0.29) benign(0.067) TCGA-EI-6507-01 16 86602314 86602314 G A FOXC2 Missense_Mutation p.R458Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-EI-6507-01 16 86602504 86602504 C A FOXC2 3'UTR 0.12 TCGA-EI-6507-01 16 86613231 86613231 C - FOXL1 Frame_Shift_Del p.S302Pfs*11 0.16 TCGA-EI-6507-01 16 87445899 87445899 G - ZCCHC14 Frame_Shift_Del p.R673Gfs*16 0.21 TCGA-EI-6507-01 16 88932296 88932296 C T PABPN1L Silent p.T103T 0.26 TCGA-EI-6507-01 16 89775777 89775777 G - VPS9D1 Frame_Shift_Del p.T486Pfs*47 0.34 TCGA-EI-6507-01 17 10300248 10300248 C T MYH8 Missense_Mutation p.A1412T 0.31 deleterious(0.03) benign(0.02) TCGA-EI-6507-01 17 10438604 10438604 T C MYH2 Missense_Mutation p.K685E 0.21 deleterious(0) possibly_damaging(0.826) TCGA-EI-6507-01 17 11865434 11865434 G A DNAH9 Missense_Mutation p.R4365H 0.19 possibly_damaging(0.626) TCGA-EI-6507-01 17 17696448 17696448 C T RAI1 Silent p.G62G 0.30 TCGA-EI-6507-01 17 19607385 19607385 A G SLC47A2 Missense_Mutation p.I375T 0.22 tolerated(1) benign(0.001) TCGA-EI-6507-01 17 1962293 1962293 G A HIC1 3'UTR 0.24 TCGA-EI-6507-01 17 21731542 21731542 G A UBBP4 Missense_Mutation p.R206H 0.27 deleterious(0.04) benign(0.102) TCGA-EI-6507-01 17 2279113 2279113 G A SGSM2 Missense_Mutation p.A810T 0.16 tolerated(0.45) benign(0.003) TCGA-EI-6507-01 17 2280079 2280079 C T SGSM2 Silent p.L888L 0.32 TCGA-EI-6507-01 17 2290383 2290383 C T MNT Missense_Mutation p.A521T 0.11 tolerated(0.46) unknown(0) TCGA-EI-6507-01 17 27086258 27086258 G - FAM222B Frame_Shift_Del p.P240Rfs*3 0.24 TCGA-EI-6507-01 17 29858706 29858706 G A RAB11FIP4 Missense_Mutation p.A624T 0.24 deleterious(0) probably_damaging(0.966) TCGA-EI-6507-01 17 34072928 34072928 C T GAS2L2 Missense_Mutation p.E530K 0.23 tolerated(0.08) benign(0.07) TCGA-EI-6507-01 17 3417933 3417933 C T TRPV3 Silent p.T744T 0.17 TCGA-EI-6507-01 17 36955530 36955530 C - PIP4K2B Frame_Shift_Del p.V50* 0.29 TCGA-EI-6507-01 17 38173127 38173127 G A CSF3 Missense_Mutation p.R180Q 0.18 tolerated(0.68) benign(0.077) TCGA-EI-6507-01 17 38508267 38508267 G A RARA Missense_Mutation p.R192H 0.40 tolerated(0.38) possibly_damaging(0.596) TCGA-EI-6507-01 17 38787845 38787846 - T SMARCE1 Frame_Shift_Ins p.R272Kfs*17 0.21 TCGA-EI-6507-01 17 38922734 38922734 T C KRT26 3'UTR 0.29 TCGA-EI-6507-01 17 39847216 39847216 G A EIF1 3'UTR 0.13 TCGA-EI-6507-01 17 40460307 40460307 G A STAT5A Missense_Mutation p.R673H 0.25 tolerated(0.33) possibly_damaging(0.739) TCGA-EI-6507-01 17 41570159 41570159 G A DHX8 Missense_Mutation p.R205H 0.22 tolerated(0.05) unknown(0) TCGA-EI-6507-01 17 42392949 42392949 G T RUNDC3A Missense_Mutation p.G309C 0.19 tolerated(0.16) possibly_damaging(0.717) TCGA-EI-6507-01 17 42475954 42475954 G T GPATCH8 Missense_Mutation p.S1164Y 0.26 deleterious(0) unknown(0) TCGA-EI-6507-01 17 43111666 43111666 G T DCAKD Missense_Mutation p.L69M 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 17 43246685 43246685 G A HEXIM2 Missense_Mutation p.A124T 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 17 43906581 43906581 A - CRHR1 Frame_Shift_Del p.S112Afs*92 0.12 TCGA-EI-6507-01 17 4500577 4500577 G A SMTNL2 Silent p.T406T 0.29 TCGA-EI-6507-01 17 46128610 46128610 C A NFE2L1 Missense_Mutation p.L44M 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6507-01 17 47117401 47117401 G A IGF2BP1 Missense_Mutation p.A256T 0.24 deleterious(0) possibly_damaging(0.73) TCGA-EI-6507-01 17 4789438 4789438 C T MINK1 Nonsense_Mutation p.R240* 0.29 TCGA-EI-6507-01 17 4799330 4799330 G A MINK1 Missense_Mutation p.A1133T 0.12 deleterious(0.01) probably_damaging(0.975) TCGA-EI-6507-01 17 48165207 48165207 G T ITGA3 Missense_Mutation p.G1007W 0.34 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 17 48445245 48445245 C T MRPL27 3'UTR 0.36 TCGA-EI-6507-01 17 4937895 4937895 C A SLC52A1 Missense_Mutation p.A3S 0.46 tolerated_low_confidence(0.07) benign(0.13) TCGA-EI-6507-01 17 53345365 53345365 C T HLF Silent p.V123V 0.13 TCGA-EI-6507-01 17 5336002 5336002 A G RPAIN 3'Flank 0.19 TCGA-EI-6507-01 17 5347753 5347753 G A DHX33 Silent p.T632T 0.17 TCGA-EI-6507-01 17 57761287 57761287 A G CLTC Missense_Mutation p.N1459D 0.27 tolerated(0.07) probably_damaging(0.999) TCGA-EI-6507-01 17 62049972 62049972 C T SCN4A Missense_Mutation p.G77D 0.26 deleterious(0) benign(0.108) TCGA-EI-6507-01 17 62582271 62582271 C T SMURF2 Missense_Mutation p.D140N 0.32 tolerated(0.1) possibly_damaging(0.561) TCGA-EI-6507-01 17 6377871 6377871 G A PITPNM3 Missense_Mutation p.P380L 0.22 tolerated(0.27) benign(0) TCGA-EI-6507-01 17 67119400 67119400 G A ABCA6 Silent p.F472F 0.15 TCGA-EI-6507-01 17 6930824 6930824 C T BCL6B Silent p.C442C 0.31 TCGA-EI-6507-01 17 72947704 72947704 G A HID1 Silent p.Y776Y 0.20 TCGA-EI-6507-01 17 73654466 73654466 C A RECQL5 Missense_Mutation p.G354V 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 17 73738544 73738544 G A ITGB4 Missense_Mutation p.G919D 0.38 deleterious(0) probably_damaging(0.973) TCGA-EI-6507-01 17 7399270 7399270 C A POLR2A Missense_Mutation p.S35Y 0.24 probably_damaging(1) TCGA-EI-6507-01 17 74136058 74136058 G A FOXJ1 Missense_Mutation p.T140I 0.23 deleterious(0.04) benign(0.063) TCGA-EI-6507-01 17 74392240 74392240 G A UBE2O Silent p.G926G 0.31 TCGA-EI-6507-01 17 74475004 74475004 C T RHBDF2 Missense_Mutation p.G215R 0.30 deleterious(0.04) probably_damaging(0.993) TCGA-EI-6507-01 17 74729392 74729392 G A METTL23 Missense_Mutation p.A114T 0.25 tolerated(0.53) benign(0.002) TCGA-EI-6507-01 17 74774284 74774284 C A MFSD11 Silent p.A400A 0.14 TCGA-EI-6507-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.15 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 17 7612856 7612856 C - EFNB3 Frame_Shift_Del p.Q331Rfs*39 0.24 TCGA-EI-6507-01 17 76462738 76462738 G A DNAH17 Missense_Mutation p.P2966L 0.37 benign(0.003) TCGA-EI-6507-01 17 76497340 76497340 G A DNAH17 Silent p.C1789C 0.27 TCGA-EI-6507-01 17 7720951 7720951 C T DNAH2 Missense_Mutation p.R3365W 0.25 probably_damaging(1) TCGA-EI-6507-01 17 78071136 78071136 G A CCDC40 Silent p.S1038S 0.14 TCGA-EI-6507-01 17 78320610 78320610 C T RNF213 Silent p.C2825C 0.29 TCGA-EI-6507-01 17 78341582 78341582 G T RNF213 Missense_Mutation p.G3969V 0.30 benign(0.04) TCGA-EI-6507-01 17 78357688 78357688 G A RNF213 Missense_Mutation p.G4761D 0.09 probably_damaging(1) TCGA-EI-6507-01 17 7979578 7979579 - G ALOX12B Frame_Shift_Ins p.N483Qfs*2 0.21 TCGA-EI-6507-01 17 7982767 7982767 G - ALOX12B Frame_Shift_Del p.L340Sfs*12 0.24 TCGA-EI-6507-01 17 80400298 80400298 G - HEXDC Frame_Shift_Del p.A532Lfs*41 0.28 TCGA-EI-6507-01 17 8159189 8159189 C A PFAS Missense_Mutation p.P214Q 0.44 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 17 8731468 8731468 G A PIK3R6 Silent p.L451L 0.21 TCGA-EI-6507-01 17 9791284 9791284 T C GLP2R Silent p.N440N 0.12 TCGA-EI-6507-01 17 9792899 9792899 G A GLP2R Silent p.L513L 0.28 TCGA-EI-6507-01 18 10677755 10677755 T C PIEZO2 Silent p.S2577S 0.26 TCGA-EI-6507-01 18 12463405 12463405 G A SPIRE1 Missense_Mutation p.T528M 0.09 deleterious(0.02) probably_damaging(1) TCGA-EI-6507-01 18 12785672 12785672 G A PTPN2 3'UTR 0.27 TCGA-EI-6507-01 18 13029760 13029760 T C CEP192 Silent p.G383G 0.12 TCGA-EI-6507-01 18 18531173 18531173 A - ROCK1 3'UTR 0.31 TCGA-EI-6507-01 18 18546988 18546988 G T ROCK1 Missense_Mutation p.A1081D 0.27 tolerated(1) benign(0) TCGA-EI-6507-01 18 24039635 24039635 C T KCTD1 Silent p.T188T 0.16 TCGA-EI-6507-01 18 24081110 24081110 C T KCTD1 Silent p.A30A 0.10 TCGA-EI-6507-01 18 31323664 31323664 C T ASXL3 Silent p.T1284T 0.16 TCGA-EI-6507-01 18 33704614 33704614 A C SLC39A6 Missense_Mutation p.V280G 0.26 tolerated(0.3) benign(0.008) TCGA-EI-6507-01 18 35145400 35145400 C A CELF4 Missense_Mutation p.D69Y 0.13 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 18 47310089 47310089 G A ACAA2 3'UTR 0.26 TCGA-EI-6507-01 18 48346295 48346295 T - MRO 5'UTR 0.21 TCGA-EI-6507-01 18 50734097 50734097 T A DCC Missense_Mutation p.F591I 0.24 deleterious(0.03) probably_damaging(0.976) TCGA-EI-6507-01 18 51729409 51729409 G A MBD2 Intron 0.28 TCGA-EI-6507-01 18 51813701 51813701 G A POLI Missense_Mutation p.R373Q 0.23 tolerated(0.31) benign(0.251) TCGA-EI-6507-01 18 56246440 56246440 T - ALPK2 Frame_Shift_Del p.K523Rfs*15 0.25 TCGA-EI-6507-01 18 59825011 59825011 G A PIGN Silent p.G84G 0.28 TCGA-EI-6507-01 18 66364524 66364524 G A TMX3 Missense_Mutation p.A170V 0.21 tolerated(1) benign(0.034) TCGA-EI-6507-01 18 67992660 67992660 G A SOCS6 Silent p.A252A 0.29 TCGA-EI-6507-01 18 71740597 71740597 C T FBXO15 3'Flank 0.33 TCGA-EI-6507-01 18 72185802 72185802 C T CNDP2 Silent p.G379G 0.24 TCGA-EI-6507-01 19 10402955 10402955 G - ICAM5 Frame_Shift_Del p.G308Afs*10 0.23 TCGA-EI-6507-01 19 10571763 10571763 G A PDE4A Silent p.Q483Q 0.24 TCGA-EI-6507-01 19 11097084 11097084 G - SMARCA4 Frame_Shift_Del p.Q194Sfs*109 0.13 TCGA-EI-6507-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.16 probably_damaging(1) TCGA-EI-6507-01 19 11324971 11324971 G - DOCK6 Frame_Shift_Del p.Q1440Rfs*25 0.16 TCGA-EI-6507-01 19 11545728 11545728 C A CCDC151 Missense_Mutation p.S37I 0.15 tolerated_low_confidence(0.42) benign(0.15) TCGA-EI-6507-01 19 12902958 12902958 G - JUNB Frame_Shift_Del p.G126Afs*24 0.14 TCGA-EI-6507-01 19 13007747 13007747 C T GCDH Silent p.N292N 0.26 TCGA-EI-6507-01 19 13325091 13325091 G A CACNA1A Missense_Mutation p.R1966W 0.30 possibly_damaging(0.835) TCGA-EI-6507-01 19 13414640 13414640 C - CACNA1A Frame_Shift_Del p.G682Afs*15 0.21 TCGA-EI-6507-01 19 15740289 15740289 G - CYP4F8 3'Flank 0.41 TCGA-EI-6507-01 19 17313675 17313675 C T MYO9B Missense_Mutation p.R1621W 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-EI-6507-01 19 17317980 17317980 G A MYO9B Missense_Mutation p.A1851T 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 19 17450340 17450340 C T GTPBP3 Silent p.S334S 0.24 TCGA-EI-6507-01 19 18245760 18245760 C - MAST3 Frame_Shift_Del p.E586Rfs*49 0.22 TCGA-EI-6507-01 19 18967055 18967057 CGA - UPF1 In_Frame_Del p.D591del 0.19 TCGA-EI-6507-01 19 19105147 19105147 G T SUGP2 3'UTR 0.26 TCGA-EI-6507-01 19 19576354 19576354 C T GATAD2A Missense_Mutation p.T67M 0.28 deleterious(0.03) benign(0.002) TCGA-EI-6507-01 19 19656244 19656244 C T CILP2 Missense_Mutation p.R964C 0.22 deleterious(0.02) possibly_damaging(0.587) TCGA-EI-6507-01 19 22272034 22272034 A C ZNF257 Missense_Mutation p.K494N 0.30 deleterious(0.02) possibly_damaging(0.797) TCGA-EI-6507-01 19 24097753 24097753 C T ZNF726 5'UTR 0.25 TCGA-EI-6507-01 19 2733260 2733260 G A SLC39A3 Missense_Mutation p.A145V 0.28 tolerated(0.21) benign(0.007) TCGA-EI-6507-01 19 2980147 2980147 A G TLE6 Missense_Mutation p.Q34R 0.23 tolerated(0.26) possibly_damaging(0.607) TCGA-EI-6507-01 19 30936007 30936007 C T ZNF536 Missense_Mutation p.A513V 0.24 deleterious(0) probably_damaging(0.994) TCGA-EI-6507-01 19 3118949 3118949 G A GNA11 Silent p.S211S 0.24 TCGA-EI-6507-01 19 33486948 33486948 G A RHPN2 Silent p.D468D 0.21 TCGA-EI-6507-01 19 35451780 35451780 G T ZNF792 Missense_Mutation p.A51D 0.24 deleterious(0) probably_damaging(0.927) TCGA-EI-6507-01 19 3557198 3557198 G T MFSD12 Silent p.A68A 0.64 TCGA-EI-6507-01 19 35741367 35741367 C A LSR Missense_Mutation p.R135S 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6507-01 19 35753559 35753559 C A LSR Missense_Mutation p.P296T 0.25 deleterious(0.03) probably_damaging(1) TCGA-EI-6507-01 19 35940825 35940825 C T FFAR2 Missense_Mutation p.A70V 0.32 tolerated(0.21) possibly_damaging(0.621) TCGA-EI-6507-01 19 36133924 36133924 A G ETV2 Missense_Mutation p.H71R 0.22 tolerated(0.06) benign(0.001) TCGA-EI-6507-01 19 36221688 36221688 G - KMT2B Frame_Shift_Del p.P1788Rfs*107 0.19 TCGA-EI-6507-01 19 36321984 36321984 G - NPHS1 Frame_Shift_Del p.P1151Rfs*29 0.28 TCGA-EI-6507-01 19 36387423 36387423 C T NFKBID Silent p.A92A 0.25 TCGA-EI-6507-01 19 36501537 36501537 G T ALKBH6 Missense_Mutation p.L157M 0.28 deleterious(0.04) probably_damaging(1) TCGA-EI-6507-01 19 37118175 37118176 - G ZNF382 Frame_Shift_Ins p.E461Gfs*7 0.20 TCGA-EI-6507-01 19 3746640 3746640 G A TJP3 Missense_Mutation p.R732H 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 19 37903604 37903604 A G ZNF569 Silent p.H652H 0.29 TCGA-EI-6507-01 19 37916782 37916782 T A ZNF569 Nonsense_Mutation p.R76* 0.11 TCGA-EI-6507-01 19 38028091 38028091 T A ZNF793 Missense_Mutation p.N177K 0.26 tolerated(0.56) benign(0.001) TCGA-EI-6507-01 19 38160882 38160882 A G ZNF781 Silent p.T56T 0.29 TCGA-EI-6507-01 19 38609985 38609985 C - SIPA1L3 Frame_Shift_Del p.I780Sfs*21 0.18 TCGA-EI-6507-01 19 38897659 38897659 G A FAM98C Missense_Mutation p.C287Y 0.17 deleterious(0.01) benign(0.003) TCGA-EI-6507-01 19 38954131 38954131 G A RYR1 Silent p.A882A 0.33 TCGA-EI-6507-01 19 39334512 39334512 C - HNRNPL Frame_Shift_Del p.D284Tfs*111 0.22 TCGA-EI-6507-01 19 39663913 39663913 C - PAK4 Frame_Shift_Del p.Q189Sfs*180 0.19 TCGA-EI-6507-01 19 40746008 40746008 C T AKT2 Missense_Mutation p.A195T 0.11 tolerated(0.13) benign(0.295) TCGA-EI-6507-01 19 40886833 40886833 G T HIPK4 Silent p.A355A 0.18 TCGA-EI-6507-01 19 41497358 41497358 G T CYP2B6 Missense_Mutation p.G50C 0.27 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 19 4236988 4236988 G T EBI3 Missense_Mutation p.R198M 0.20 deleterious(0.04) possibly_damaging(0.863) TCGA-EI-6507-01 19 42713885 42713885 C T DEDD2 Missense_Mutation p.A186T 0.26 tolerated(0.57) benign(0.034) TCGA-EI-6507-01 19 42754536 42754536 G A ERF Silent p.G68G 0.29 TCGA-EI-6507-01 19 42838298 42838298 G - MEGF8 Frame_Shift_Del p.G166Vfs*53 0.24 TCGA-EI-6507-01 19 42910394 42910394 C T LIPE Missense_Mutation p.A762T 0.24 deleterious(0.02) probably_damaging(0.988) TCGA-EI-6507-01 19 43967350 43967350 C T LYPD3 Missense_Mutation p.V158I 0.19 tolerated(0.3) possibly_damaging(0.486) TCGA-EI-6507-01 19 44097045 44097045 G A L34079.2 Missense_Mutation p.A49V 0.32 deleterious(0.05) benign(0.043) TCGA-EI-6507-01 19 44097061 44097061 C T IRGQ Missense_Mutation p.R330H 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-EI-6507-01 19 4510791 4510791 C T PLIN4 Missense_Mutation p.A1047T 0.20 tolerated(0.23) benign(0.001) TCGA-EI-6507-01 19 46850393 46850393 C - PPP5C Frame_Shift_Del p.R16Gfs*10 0.19 TCGA-EI-6507-01 19 46997834 46997834 C T PNMAL2 Missense_Mutation p.A297T 0.30 deleterious(0) probably_damaging(0.996) TCGA-EI-6507-01 19 48047437 48047437 G A ZNF541 Silent p.A783A 0.38 TCGA-EI-6507-01 19 49206855 49206855 G - FUT2 Frame_Shift_Del p.V216Wfs*71 0.26 TCGA-EI-6507-01 19 49334941 49334941 G A HSD17B14 Missense_Mutation p.T118M 0.25 tolerated(0.19) benign(0.121) TCGA-EI-6507-01 19 4941840 4941840 C T UHRF1 RNA 0.15 TCGA-EI-6507-01 19 49510281 49510281 C T RUVBL2 Missense_Mutation p.A91V 0.22 deleterious(0) probably_damaging(0.922) TCGA-EI-6507-01 19 49513087 49513087 G A RUVBL2 Missense_Mutation p.D173N 0.13 tolerated(0.05) probably_damaging(0.972) TCGA-EI-6507-01 19 49813001 49813001 G A SLC6A16 Silent p.G261G 0.34 TCGA-EI-6507-01 19 50098979 50098979 G - PRR12 Frame_Shift_Del p.Q465Rfs*5 0.21 TCGA-EI-6507-01 19 50918238 50918238 T G POLD1 Missense_Mutation p.L852R 0.21 deleterious(0) probably_damaging(0.976) TCGA-EI-6507-01 19 50979444 50979444 G A FAM71E1 Missense_Mutation p.R68C 0.25 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-EI-6507-01 19 51739079 51739079 T C CD33 Intron 0.33 TCGA-EI-6507-01 19 5212404 5212404 C T PTPRS Silent p.L1571L 0.25 TCGA-EI-6507-01 19 52394186 52394186 G T ZNF649 Silent p.P401P 0.24 TCGA-EI-6507-01 19 54139893 54139893 G A DPRX Missense_Mutation p.C76Y 0.21 tolerated(1) benign(0.001) TCGA-EI-6507-01 19 54291978 54291978 C T NLRP12 3'Flank 0.26 TCGA-EI-6507-01 19 54672280 54672280 G A TMC4 Missense_Mutation p.P196L 0.27 tolerated(0.59) benign(0.113) TCGA-EI-6507-01 19 55738752 55738752 C A TMEM86B Missense_Mutation p.A160S 0.38 tolerated(0.76) benign(0.068) TCGA-EI-6507-01 19 5587333 5587333 G A SAFB2 Missense_Mutation p.A928V 0.08 deleterious(0.01) possibly_damaging(0.483) TCGA-EI-6507-01 19 56001764 56001764 C - SSC5D Frame_Shift_Del p.R194Afs*41 0.19 TCGA-EI-6507-01 19 56006054 56006054 C - SSC5D Frame_Shift_Del p.P432Rfs*4 0.23 TCGA-EI-6507-01 19 56466501 56466501 G A NLRP8 Silent p.T359T 0.24 TCGA-EI-6507-01 19 56701518 56701518 C T ZSCAN5B Missense_Mutation p.R389Q 0.19 tolerated(0.1) benign(0.271) TCGA-EI-6507-01 19 57328908 57328908 C T PEG3 Missense_Mutation p.R301Q 0.20 tolerated(0.11) benign(0.066) TCGA-EI-6507-01 19 5832407 5832407 C T FUT6 Missense_Mutation p.A58T 0.34 tolerated(0.64) benign(0.013) TCGA-EI-6507-01 19 5843865 5843865 C T FUT3 Missense_Mutation p.R329H 0.16 tolerated(0.27) benign(0.03) TCGA-EI-6507-01 19 58579256 58579256 C T ZNF135 Silent p.C492C 0.13 TCGA-EI-6507-01 19 58966975 58966975 C T ZNF324B Missense_Mutation p.R222C 0.21 tolerated(0.17) benign(0.386) TCGA-EI-6507-01 19 617309 617309 C T POLRMT Missense_Mutation p.E1220K 0.24 tolerated(0.31) benign(0.14) TCGA-EI-6507-01 19 6418029 6418029 C T KHSRP Missense_Mutation p.R314Q 0.34 deleterious(0.01) probably_damaging(0.983) TCGA-EI-6507-01 19 648262 648263 - G RNF126 Frame_Shift_Ins p.V268Rfs*123 0.19 TCGA-EI-6507-01 19 6832122 6832122 G A VAV1 Silent p.L473L 0.22 TCGA-EI-6507-01 19 7607647 7607648 - C PNPLA6 Frame_Shift_Ins p.T466Hfs*6 0.29 TCGA-EI-6507-01 19 7964957 7964957 T - LRRC8E Frame_Shift_Del p.F518Sfs*5 0.24 TCGA-EI-6507-01 19 7977252 7977252 C T MAP2K7 Missense_Mutation p.A399V 0.33 tolerated(0.16) benign(0.015) TCGA-EI-6507-01 19 8154511 8154511 G A FBN3 Silent p.G2098G 0.19 TCGA-EI-6507-01 19 9047453 9047453 G A MUC16 Missense_Mutation p.T11393I 0.25 benign(0.007) TCGA-EI-6507-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.19 TCGA-EI-6507-01 1 10318717 10318717 G A KIF1B Missense_Mutation p.G117D 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 1 103453256 103453256 G T COL11A1 Missense_Mutation p.P812H 0.36 unknown(0) TCGA-EI-6507-01 1 10384048 10384048 G A KIF1B Missense_Mutation p.R776H 0.07 deleterious(0) probably_damaging(0.993) TCGA-EI-6507-01 1 104112973 104112973 A T AMY2B Intron 0.10 TCGA-EI-6507-01 1 10709168 10709168 G A CASZ1 Silent p.G1039G 0.27 TCGA-EI-6507-01 1 110766275 110766275 T C KCNC4 Silent p.C456C 0.28 TCGA-EI-6507-01 1 11083518 11083518 C T TARDBP 3'UTR 0.17 TCGA-EI-6507-01 1 112524649 112524649 C T KCND3 Missense_Mutation p.V234I 0.22 tolerated(0.13) benign(0.312) TCGA-EI-6507-01 1 114944078 114944078 T C TRIM33 Missense_Mutation p.E967G 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 1 115828721 115828722 CA - NGF Frame_Shift_Del p.V232Afs*39 0.38 TCGA-EI-6507-01 1 11596783 11596783 G T PTCHD2 3'UTR 0.28 TCGA-EI-6507-01 1 117156428 117156428 C T IGSF3 Missense_Mutation p.R264Q 0.23 tolerated(0.09) benign(0) TCGA-EI-6507-01 1 120438430 120438430 T C ADAM30 Missense_Mutation p.D177G 0.30 tolerated(0.08) benign(0.02) TCGA-EI-6507-01 1 12089331 12089331 C T MIIP Silent p.D236D 0.24 TCGA-EI-6507-01 1 12183838 12183838 C T TNFRSF8 Silent p.S369S 0.27 TCGA-EI-6507-01 1 12333174 12333174 C A VPS13D Missense_Mutation p.L740I 0.18 probably_damaging(0.978) TCGA-EI-6507-01 1 12343305 12343305 G A VPS13D Missense_Mutation p.V1716M 0.16 benign(0.134) TCGA-EI-6507-01 1 144880809 144880809 C A PDE4DIP Missense_Mutation p.Q1273H 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 1 145415727 145415727 T C HFE2 Silent p.F182F 0.19 TCGA-EI-6507-01 1 149858110 149858125 GCCGTCTTTCTTCTGG - HIST2H2BE Frame_Shift_Del p.Q23Rfs*19 0.08 TCGA-EI-6507-01 1 149859099 149859100 CT - HIST2H2AB Frame_Shift_Del p.H124Qfs*? 0.21 TCGA-EI-6507-01 1 149885063 149885063 G A SV2A Silent p.G110G 0.30 TCGA-EI-6507-01 1 149908497 149908498 - G MTMR11 Frame_Shift_Ins p.Q15Pfs*14 0.22 TCGA-EI-6507-01 1 150444062 150444062 G A RPRD2 Missense_Mutation p.A880T 0.19 tolerated_low_confidence(0.18) benign(0.004) TCGA-EI-6507-01 1 151131303 151131303 C T TNFAIP8L2 Missense_Mutation p.R44C 0.31 deleterious(0) probably_damaging(0.994) TCGA-EI-6507-01 1 151149047 151149047 G A VPS72 3'UTR 0.26 TCGA-EI-6507-01 1 151678795 151678795 G A CELF3 Missense_Mutation p.P344L 0.17 tolerated(0.07) benign(0.003) TCGA-EI-6507-01 1 152857287 152857287 C T SMCP 3'UTR 0.26 TCGA-EI-6507-01 1 154544280 154544280 C T CHRNB2 Silent p.T327T 0.30 TCGA-EI-6507-01 1 154680615 154680615 G A KCNN3 Missense_Mutation p.A678V 0.20 deleterious(0.04) possibly_damaging(0.655) TCGA-EI-6507-01 1 155171335 155171335 C T THBS3 Missense_Mutation p.R401H 0.12 deleterious(0.04) possibly_damaging(0.498) TCGA-EI-6507-01 1 155290450 155290450 T C FDPS 3'UTR 0.15 TCGA-EI-6507-01 1 155349914 155349915 - A ASH1L Intron 0.12 TCGA-EI-6507-01 1 155727042 155727042 G T GON4L Missense_Mutation p.H1776N 0.29 deleterious(0.02) benign(0.216) TCGA-EI-6507-01 1 156503578 156503578 G A IQGAP3 Silent p.I1321I 0.26 TCGA-EI-6507-01 1 156815041 156815041 C - INSRR Frame_Shift_Del p.G755Afs*20 0.24 TCGA-EI-6507-01 1 156851489 156851489 G A NTRK1 3'Flank 0.33 TCGA-EI-6507-01 1 15687100 15687100 G A FHAD1 Missense_Mutation p.A168T 0.14 deleterious(0.02) benign(0.004) TCGA-EI-6507-01 1 158576486 158576487 - G OR10Z1 Frame_Shift_Ins p.D89Gfs*23 0.25 TCGA-EI-6507-01 1 158639317 158639317 C T SPTA1 Missense_Mutation p.A572T 0.22 tolerated(0.19) benign(0.038) TCGA-EI-6507-01 1 159170735 159170735 C - CADM3 3'UTR 0.21 TCGA-EI-6507-01 1 159912813 159912813 G T IGSF9 Missense_Mutation p.L63M 0.09 tolerated(0.29) benign(0.103) TCGA-EI-6507-01 1 161145720 161145720 G A B4GALT3 Missense_Mutation p.P44L 0.17 deleterious(0.01) possibly_damaging(0.57) TCGA-EI-6507-01 1 161954715 161954715 A G OLFML2B Silent p.Y510Y 0.27 TCGA-EI-6507-01 1 162351735 162351735 C T RP11-565P22.6 Missense_Mutation p.A124V 0.28 tolerated_low_confidence(0.57) benign(0.031) TCGA-EI-6507-01 1 165533020 165533020 A G LRRC52 Missense_Mutation p.T301A 0.27 tolerated_low_confidence(0.73) benign(0) TCGA-EI-6507-01 1 168065765 168065765 G A GPR161 Silent p.S380S 0.28 TCGA-EI-6507-01 1 168065808 168065808 C T GPR161 Missense_Mutation p.R366Q 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-EI-6507-01 1 1688567 1688568 - C NADK Frame_Shift_Ins p.A253Gfs*45 0.26 TCGA-EI-6507-01 1 169672532 169672532 A G SELL Silent p.C285C 0.14 TCGA-EI-6507-01 1 171621330 171621330 G A MYOC Missense_Mutation p.A141V 0.24 deleterious(0.04) benign(0.12) TCGA-EI-6507-01 1 17277573 17277573 C T CROCC Missense_Mutation p.R988W 0.33 probably_damaging(0.972) TCGA-EI-6507-01 1 173010695 173010695 G A TNFSF18 Missense_Mutation p.R138W 0.23 tolerated(0.2) benign(0.032) TCGA-EI-6507-01 1 17314834 17314834 G A ATP13A2 Silent p.C915C 0.17 TCGA-EI-6507-01 1 17323636 17323636 C T ATP13A2 Silent p.P358P 0.18 TCGA-EI-6507-01 1 173628458 173628458 C A ANKRD45 Missense_Mutation p.G34C 0.24 tolerated(0.12) possibly_damaging(0.707) TCGA-EI-6507-01 1 17371382 17371382 G A SDHB Missense_Mutation p.A25V 0.17 tolerated_low_confidence(0.31) benign(0.001) TCGA-EI-6507-01 1 176826678 176826678 G T ASTN1 3'Flank 0.24 TCGA-EI-6507-01 1 179821864 179821864 A G TOR1AIP2 5'UTR 0.08 TCGA-EI-6507-01 1 180010311 180010311 G A CEP350 Silent p.L1383L 0.28 TCGA-EI-6507-01 1 180905148 180905149 - T KIAA1614 Frame_Shift_Ins p.L703Ffs*9 0.11 TCGA-EI-6507-01 1 197887102 197887102 G A LHX9 Missense_Mutation p.G50D 0.27 tolerated(0.07) benign(0.042) TCGA-EI-6507-01 1 198288711 198288711 A G NEK7 3'UTR 0.15 TCGA-EI-6507-01 1 200376876 200376876 C T ZNF281 Missense_Mutation p.G653D 0.17 tolerated(0.21) benign(0.001) TCGA-EI-6507-01 1 201046242 201046242 G A CACNA1S Silent p.L545L 0.20 TCGA-EI-6507-01 1 202880212 202880212 G - KLHL12 Frame_Shift_Del p.R230Gfs*6 0.23 TCGA-EI-6507-01 1 204419065 204419065 G - PIK3C2B Frame_Shift_Del p.P716Hfs*32 0.32 TCGA-EI-6507-01 1 207134158 207134158 G A FCAMR Missense_Mutation p.P355S 0.30 deleterious(0.01) possibly_damaging(0.773) TCGA-EI-6507-01 1 208218009 208218009 C T PLXNA2 Missense_Mutation p.V1240I 0.21 tolerated(0.93) benign(0.051) TCGA-EI-6507-01 1 209806041 209806041 C T LAMB3 Missense_Mutation p.A237T 0.18 tolerated(0.57) benign(0.032) TCGA-EI-6507-01 1 210856854 210856854 C T KCNH1 Silent p.S913S 0.32 TCGA-EI-6507-01 1 212550912 212550912 G A TMEM206 Missense_Mutation p.R320W 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 1 212799707 212799707 G A FAM71A Silent p.T496T 0.22 TCGA-EI-6507-01 1 214178556 214178556 T - PROX1 Frame_Shift_Del p.Y594Ifs*10 0.21 TCGA-EI-6507-01 1 215342624 215342624 T G KCNK2 Silent p.G186G 0.13 TCGA-EI-6507-01 1 216741434 216741434 C T ESRRG Missense_Mutation p.R204H 0.26 deleterious(0.03) probably_damaging(0.957) TCGA-EI-6507-01 1 220324483 220324483 A - RAB3GAP2 3'UTR 0.65 TCGA-EI-6507-01 1 222717148 222717148 G A HHIPL2 Silent p.A235A 0.31 TCGA-EI-6507-01 1 22333381 22333381 G A CELA3A Missense_Mutation p.A125T 0.15 deleterious(0.01) possibly_damaging(0.614) TCGA-EI-6507-01 1 224612245 224612245 T C WDR26 Missense_Mutation p.T247A 0.24 deleterious(0.02) benign(0.254) TCGA-EI-6507-01 1 226046936 226046936 A G TMEM63A Missense_Mutation p.M446T 0.28 deleterious(0) possibly_damaging(0.805) TCGA-EI-6507-01 1 226578195 226578195 G A PARP1 Missense_Mutation p.A178V 0.22 tolerated(0.17) benign(0.03) TCGA-EI-6507-01 1 227920209 227920209 C T JMJD4 Missense_Mutation p.A426T 0.19 tolerated(0.38) benign(0.01) TCGA-EI-6507-01 1 227921030 227921030 G A SNAP47 5'Flank 0.36 TCGA-EI-6507-01 1 228247112 228247112 C T WNT3A Silent p.C335C 0.35 TCGA-EI-6507-01 1 228433226 228433226 G A OBSCN Silent p.T1290T 0.27 TCGA-EI-6507-01 1 228491588 228491591 TATT - OBSCN Frame_Shift_Del p.Y4651Cfs*23 0.23 TCGA-EI-6507-01 1 228503802 228503802 G T OBSCN Missense_Mutation p.A5380S 0.17 probably_damaging(0.999) TCGA-EI-6507-01 1 228528808 228528808 G A OBSCN Missense_Mutation p.V6861M 0.29 benign(0.416) TCGA-EI-6507-01 1 2290147 2290147 G A MORN1 Silent p.S251S 0.15 TCGA-EI-6507-01 1 230498080 230498080 C T PGBD5 Intron 0.18 TCGA-EI-6507-01 1 230991624 230991624 C T C1orf198 Intron 0.23 TCGA-EI-6507-01 1 231472265 231472265 C A EXOC8 Missense_Mutation p.K409N 0.28 deleterious(0) benign(0.205) TCGA-EI-6507-01 1 232600867 232600867 C T SIPA1L2 Missense_Mutation p.A847T 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 1 233344392 233344393 - A PCNXL2 Frame_Shift_Ins p.C912Lfs*11 0.22 TCGA-EI-6507-01 1 23385581 23385581 C A KDM1A Missense_Mutation p.A363D 0.30 tolerated(0.05) benign(0.387) TCGA-EI-6507-01 1 236157153 236157153 G A NID1 Silent p.C849C 0.20 TCGA-EI-6507-01 1 23769023 23769024 - CT ASAP3 Frame_Shift_Ins p.R186Sfs*21 0.09 TCGA-EI-6507-01 1 238053843 238053843 C T ZP4 Silent p.V31V 0.19 TCGA-EI-6507-01 1 241761112 241761112 G A OPN3 Missense_Mutation p.S294L 0.30 deleterious(0.02) benign(0.23) TCGA-EI-6507-01 1 243388560 243388560 A - CEP170 Frame_Shift_Del p.L8Wfs*2 0.24 TCGA-EI-6507-01 1 243471392 243471392 G C SDCCAG8 Missense_Mutation p.G281A 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-EI-6507-01 1 243589845 243589845 A G SDCCAG8 Missense_Mutation p.E657G 0.13 deleterious(0) possibly_damaging(0.904) TCGA-EI-6507-01 1 24392759 24392759 C - MYOM3 Intron 0.15 TCGA-EI-6507-01 1 245530620 245530620 G A KIF26B Missense_Mutation p.G317D 0.19 deleterious(0) unknown(0) TCGA-EI-6507-01 1 248224426 248224426 G A OR2L3 Nonsense_Mutation p.W148* 0.21 TCGA-EI-6507-01 1 25712283 25712283 A G RHCE Missense_Mutation p.I331T 0.08 tolerated(1) benign(0) TCGA-EI-6507-01 1 27436136 27436136 C T SLC9A1 Missense_Mutation p.A316T 0.28 tolerated(0.11) benign(0.408) TCGA-EI-6507-01 1 27631523 27631523 G A WDTC1 Missense_Mutation p.D558N 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 1 33161281 33161281 C T SYNC Missense_Mutation p.G140R 0.28 tolerated_low_confidence(0.13) benign(0.014) TCGA-EI-6507-01 1 33237952 33237952 A G KIAA1522 Missense_Mutation p.T1058A 0.26 tolerated_low_confidence(1) benign(0.093) TCGA-EI-6507-01 1 33747200 33747200 C G ZNF362 Missense_Mutation p.C232W 0.14 deleterious(0) probably_damaging(0.98) TCGA-EI-6507-01 1 35972480 35972480 T - KIAA0319L Frame_Shift_Del p.K133Nfs*22 0.18 TCGA-EI-6507-01 1 3692414 3692414 G A SMIM1 Missense_Mutation p.G56S 0.32 tolerated(0.17) probably_damaging(1) TCGA-EI-6507-01 1 38219959 38219959 C T EPHA10 Missense_Mutation p.A312T 0.26 deleterious(0.04) possibly_damaging(0.727) TCGA-EI-6507-01 1 41012494 41012494 G A ZNF684 Missense_Mutation p.A167T 0.25 tolerated(0.26) benign(0.016) TCGA-EI-6507-01 1 43200781 43200781 G A CLDN19 Silent p.S217S 0.18 TCGA-EI-6507-01 1 43909271 43909271 C T SZT2 Missense_Mutation p.R2820C 0.35 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 1 44071004 44071004 C T PTPRF Silent p.I1093I 0.20 TCGA-EI-6507-01 1 44595285 44595285 T C KLF17 Silent p.C114C 0.17 TCGA-EI-6507-01 1 44680022 44680022 A - DMAP1 Frame_Shift_Del p.K37Nfs*9 0.20 TCGA-EI-6507-01 1 46089653 46089653 G T CCDC17 5'UTR 0.23 TCGA-EI-6507-01 1 47046209 47046209 G T MKNK1 Missense_Mutation p.A76D 0.25 deleterious(0) probably_damaging(0.996) TCGA-EI-6507-01 1 52285470 52285470 A C NRD1 Splice_Site p.X499_splice 0.17 TCGA-EI-6507-01 1 52344009 52344009 C - NRD1 Frame_Shift_Del p.S94Lfs*33 0.21 TCGA-EI-6507-01 1 55277593 55277593 C T C1orf177 Missense_Mutation p.R203W 0.19 deleterious(0.04) possibly_damaging(0.784) TCGA-EI-6507-01 1 55307313 55307313 C T C1orf177 Intron 0.28 TCGA-EI-6507-01 1 55509560 55509560 G A PCSK9 Silent p.E84E 0.27 TCGA-EI-6507-01 1 62321760 62321760 T C INADL Missense_Mutation p.V724A 0.16 deleterious(0.01) possibly_damaging(0.9) TCGA-EI-6507-01 1 62915918 62915918 T G USP1 Missense_Mutation p.F542V 0.29 tolerated(0.1) benign(0.201) TCGA-EI-6507-01 1 62923331 62923331 A T DOCK7 Missense_Mutation p.D2055E 0.24 tolerated(0.09) possibly_damaging(0.668) TCGA-EI-6507-01 1 63790374 63790374 A G FOXD3 3'UTR 0.11 TCGA-EI-6507-01 1 65098317 65098317 A C CACHD1 Missense_Mutation p.K176T 0.19 tolerated(0.07) benign(0.159) TCGA-EI-6507-01 1 65312354 65312354 G A JAK1 Silent p.G655G 0.21 TCGA-EI-6507-01 1 6534578 6534578 C A PLEKHG5 Missense_Mutation p.Q203H 0.27 deleterious(0) probably_damaging(0.994) TCGA-EI-6507-01 1 66102459 66102460 - AG LEPR Frame_Shift_Ins p.S1090Rfs*6 0.32 TCGA-EI-6507-01 1 67370934 67370934 G A WDR78 Missense_Mutation p.P99S 0.25 tolerated(0.39) benign(0.01) TCGA-EI-6507-01 1 67787453 67787453 G A IL12RB2 Missense_Mutation p.G82D 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-EI-6507-01 1 68619317 68619317 C A WLS Missense_Mutation p.G227V 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 1 74665348 74665348 G A FPGT-TNNI3K Missense_Mutation p.G41D 0.14 deleterious_low_confidence(0) benign(0.42) TCGA-EI-6507-01 1 75218076 75218076 A - TYW3 Frame_Shift_Del p.M178Wfs*24 0.18 TCGA-EI-6507-01 1 7993346 7993346 C T TNFRSF9 Silent p.P185P 0.23 TCGA-EI-6507-01 1 87634007 87634007 A G RP5-1052I5.2 3'UTR 0.32 TCGA-EI-6507-01 1 879423 879423 T C SAMD11 Missense_Mutation p.S646P 0.27 deleterious(0.03) benign(0.102) TCGA-EI-6507-01 1 89651001 89651001 A G GBP4 Missense_Mutation p.V620A 0.31 tolerated(1) benign(0) TCGA-EI-6507-01 1 89732028 89732028 C T GBP5 Splice_Site p.X290_splice 0.22 TCGA-EI-6507-01 1 93297607 93297607 C - RPL5 5'UTR 0.21 TCGA-EI-6507-01 1 98165012 98165012 A G DPYD Missense_Mutation p.L192P 0.22 deleterious(0) probably_damaging(0.997) TCGA-EI-6507-01 20 10036303 10036303 A C ANKEF1 Missense_Mutation p.T776P 0.13 deleterious_low_confidence(0.02) benign(0.368) TCGA-EI-6507-01 20 1515073 1515073 A G SIRPD Nonstop_Mutation p.*198Qext*42 0.28 TCGA-EI-6507-01 20 1559074 1559074 C T RP4-576H24.4 Missense_Mutation p.A114T 0.22 tolerated(0.48) benign(0.162) TCGA-EI-6507-01 20 17640316 17640316 C - RRBP1 Intron 0.19 TCGA-EI-6507-01 20 23860294 23860294 G A CST5 Missense_Mutation p.T7I 0.22 tolerated(0.15) benign(0.022) TCGA-EI-6507-01 20 2686625 2686625 C T EBF4 Silent p.P96P 0.18 TCGA-EI-6507-01 20 30232652 30232652 C A COX4I2 Missense_Mutation p.P154H 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 20 30584987 30584987 G A XKR7 Silent p.A489A 0.19 TCGA-EI-6507-01 20 3146661 3146661 C A LZTS3 Missense_Mutation p.G269C 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6507-01 20 31757090 31757090 G A BPIFA2 Missense_Mutation p.V47I 0.18 tolerated(0.49) benign(0.007) TCGA-EI-6507-01 20 33345744 33345744 C T NCOA6 Silent p.Q269Q 0.31 TCGA-EI-6507-01 20 34144152 34144152 C T ERGIC3 Intron 0.28 TCGA-EI-6507-01 20 35422784 35422784 G - SOGA1 Frame_Shift_Del p.P1234Qfs*108 0.26 TCGA-EI-6507-01 20 35443677 35443677 T A SOGA1 Missense_Mutation p.E723V 0.27 deleterious(0) probably_damaging(0.931) TCGA-EI-6507-01 20 36874451 36874451 G A KIAA1755 Silent p.T27T 0.34 TCGA-EI-6507-01 20 37168504 37168504 C G RALGAPB Missense_Mutation p.A822G 0.29 deleterious(0.02) probably_damaging(0.94) TCGA-EI-6507-01 20 43726379 43726379 C T KCNS1 Missense_Mutation p.R345H 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 20 44054454 44054454 C - PIGT Frame_Shift_Del p.P577Hfs*67 0.35 TCGA-EI-6507-01 20 44640855 44640855 G A MMP9 Silent p.S359S 0.25 TCGA-EI-6507-01 20 44698976 44698976 C T NCOA5 Missense_Mutation p.D80N 0.25 deleterious(0.01) unknown(0) TCGA-EI-6507-01 20 45170278 45170278 G A OCSTAMP Missense_Mutation p.H446Y 0.23 tolerated(0.91) possibly_damaging(0.811) TCGA-EI-6507-01 20 4706105 4706105 G A PRND 3'UTR 0.25 TCGA-EI-6507-01 20 4706207 4706207 T A PRND 3'UTR 0.17 TCGA-EI-6507-01 20 47741103 47741103 G A STAU1 Missense_Mutation p.P211S 0.30 deleterious(0) possibly_damaging(0.692) TCGA-EI-6507-01 20 48522136 48522136 C T SPATA2 3'UTR 0.29 TCGA-EI-6507-01 20 49620871 49620871 C A KCNG1 Missense_Mutation p.W416L 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 20 50400819 50400819 C A SALL4 Missense_Mutation p.K1049N 0.36 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 20 56185345 56185345 G A ZBP1 Missense_Mutation p.A318V 0.32 tolerated(0.52) benign(0.032) TCGA-EI-6507-01 20 57430215 57430215 G A GNAS Missense_Mutation p.R632H 0.18 tolerated_low_confidence(0.27) benign(0.026) TCGA-EI-6507-01 20 5843794 5843794 A T C20orf196 Missense_Mutation p.R101S 0.09 tolerated(0.64) benign(0.081) TCGA-EI-6507-01 20 60882875 60882875 G T ADRM1 Missense_Mutation p.G283C 0.24 deleterious(0.01) unknown(0) TCGA-EI-6507-01 20 61513251 61513251 C T DIDO1 Missense_Mutation p.G1353R 0.28 possibly_damaging(0.685) TCGA-EI-6507-01 20 61981476 61981476 G T CHRNA4 Silent p.L429L 0.23 TCGA-EI-6507-01 20 62273466 62273466 C G STMN3 Missense_Mutation p.E160Q 0.28 deleterious(0.02) benign(0.245) TCGA-EI-6507-01 20 62493445 62493445 C T ABHD16B Silent p.Y184Y 0.39 TCGA-EI-6507-01 20 62594106 62594106 G T ZNF512B Missense_Mutation p.P666H 0.08 deleterious(0.01) possibly_damaging(0.503) TCGA-EI-6507-01 21 11038887 11038887 G A BAGE2 RNA 0.06 TCGA-EI-6507-01 21 14410718 14410718 A T ANKRD30BP2 5'Flank 0.15 TCGA-EI-6507-01 21 19190537 19190537 G A C21orf91 Silent p.C33C 0.24 TCGA-EI-6507-01 21 34945711 34945713 AAG - SON In_Frame_Del p.E2329del 0.14 TCGA-EI-6507-01 21 34967791 34967791 G A CRYZL1 Intron 0.32 TCGA-EI-6507-01 21 38569962 38569962 A G TTC3 Missense_Mutation p.T1891A 0.39 tolerated(0.06) benign(0.049) TCGA-EI-6507-01 21 39426785 39426785 G A DSCR4 3'UTR 0.31 TCGA-EI-6507-01 21 42540489 42540489 C - BACE2 Frame_Shift_Del p.P102Rfs*25 0.21 TCGA-EI-6507-01 21 43803247 43803247 G A TMPRSS3 Missense_Mutation p.S226L 0.38 deleterious(0.02) benign(0.006) TCGA-EI-6507-01 21 45033773 45033773 G T HSF2BP Silent p.L210L 0.09 TCGA-EI-6507-01 21 45705994 45705994 C T AIRE Silent p.H35H 0.29 TCGA-EI-6507-01 21 45773671 45773671 G A TRPM2 Missense_Mutation p.V30I 0.30 deleterious_low_confidence(0.03) benign(0.036) TCGA-EI-6507-01 21 45953746 45953746 G A TSPEAR Missense_Mutation p.R122W 0.29 deleterious(0) probably_damaging(0.988) TCGA-EI-6507-01 21 46032347 46032347 C T KRTAP10-8 Silent p.T110T 0.23 TCGA-EI-6507-01 21 46931120 46931120 C T COL18A1 Silent p.D1443D 0.28 TCGA-EI-6507-01 21 47540428 47540428 G - COL6A2 Splice_Site p.X446_splice 0.17 TCGA-EI-6507-01 21 47836599 47836599 C T PCNT Missense_Mutation p.A2256V 0.35 possibly_damaging(0.739) TCGA-EI-6507-01 22 18300932 18300932 G - MICAL3 Frame_Shift_Del p.R1499Gfs*106 0.28 TCGA-EI-6507-01 22 20130522 20130522 C - ZDHHC8 Frame_Shift_Del p.T459Rfs*177 0.51 TCGA-EI-6507-01 22 20759768 20759769 - G ZNF74 Frame_Shift_Ins p.R151Afs*58 0.12 TCGA-EI-6507-01 22 21080826 21080826 C T PI4KA Missense_Mutation p.A1649T 0.37 tolerated(0.12) benign(0.055) TCGA-EI-6507-01 22 22569416 22569416 C T IGLV10-54 Silent p.T36T 0.28 TCGA-EI-6507-01 22 23247187 23247187 A G IGLJ3 Missense_Mutation p.T45A 0.12 deleterious_low_confidence(0) benign(0.398) TCGA-EI-6507-01 22 24125776 24125776 C T AP000349.1 Missense_Mutation p.V124M 0.32 unknown(0) TCGA-EI-6507-01 22 24911205 24911205 G A UPB1 Missense_Mutation p.V220M 0.19 deleterious(0) probably_damaging(0.996) TCGA-EI-6507-01 22 25120966 25120966 G A PIWIL3 Missense_Mutation p.P716S 0.24 deleterious(0.03) probably_damaging(1) TCGA-EI-6507-01 22 26342201 26342201 G A MYO18B Silent p.T1872T 0.18 TCGA-EI-6507-01 22 29674169 29674169 C T EWSR1 Missense_Mutation p.A132V 0.30 tolerated(0.15) possibly_damaging(0.837) TCGA-EI-6507-01 22 31485922 31485922 C - SMTN Frame_Shift_Del p.S239Afs*118 0.14 TCGA-EI-6507-01 22 31500814 31500814 G T SELM 3'UTR 0.33 TCGA-EI-6507-01 22 31658225 31658225 G T LIMK2 Missense_Mutation p.E198D 0.22 tolerated(0.05) benign(0.261) TCGA-EI-6507-01 22 32547481 32547481 G A C22orf42 Missense_Mutation p.S153L 0.25 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-EI-6507-01 22 32629009 32629009 G A SLC5A4 Missense_Mutation p.R300C 0.14 deleterious(0) benign(0.344) TCGA-EI-6507-01 22 36661550 36661550 T C APOL1 Missense_Mutation p.I239T 0.19 deleterious(0.05) benign(0.12) TCGA-EI-6507-01 22 37328934 37328934 G A CSF2RB Silent p.T380T 0.33 TCGA-EI-6507-01 22 37462055 37462055 C A TMPRSS6 3'UTR 0.34 TCGA-EI-6507-01 22 37578080 37578080 G A C1QTNF6 3'UTR 0.21 TCGA-EI-6507-01 22 37678616 37678616 C T CYTH4 Silent p.D2D 0.25 TCGA-EI-6507-01 22 38130821 38130821 C T TRIOBP Missense_Mutation p.A1493V 0.19 deleterious_low_confidence(0.05) benign(0.115) TCGA-EI-6507-01 22 39479830 39479830 C T APOBEC3G Missense_Mutation p.R226C 0.24 tolerated(0.18) benign(0.036) TCGA-EI-6507-01 22 43032804 43032804 T C CYB5R3 Missense_Mutation p.M57V 0.24 tolerated(0.49) benign(0.017) TCGA-EI-6507-01 22 44285694 44285694 G - PNPLA5 Frame_Shift_Del p.E160Sfs*12 0.25 TCGA-EI-6507-01 22 44287046 44287046 C T PNPLA5 Missense_Mutation p.A108T 0.17 tolerated(0.63) possibly_damaging(0.453) TCGA-EI-6507-01 22 50546632 50546632 C T MOV10L1 Silent p.S170S 0.12 TCGA-EI-6507-01 22 50879410 50879410 C - PPP6R2 Frame_Shift_Del p.P821Rfs*23 0.20 TCGA-EI-6507-01 22 51064600 51064600 G A ARSA Missense_Mutation p.P321S 0.35 deleterious(0) possibly_damaging(0.767) TCGA-EI-6507-01 2 105886127 105886127 C T TGFBRAP1 Missense_Mutation p.A670T 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 2 112847235 112847235 C T TMEM87B Silent p.I324I 0.27 TCGA-EI-6507-01 2 112917331 112917331 G A FBLN7 Missense_Mutation p.A52T 0.09 tolerated(0.67) benign(0.001) TCGA-EI-6507-01 2 113309416 113309416 C A POLR1B Missense_Mutation p.S276Y 0.27 deleterious(0) possibly_damaging(0.61) TCGA-EI-6507-01 2 114699766 114699766 C T ACTR3 Missense_Mutation p.R230C 0.25 deleterious(0) possibly_damaging(0.826) TCGA-EI-6507-01 2 116447456 116447456 G A DPP10 Missense_Mutation p.V183I 0.20 tolerated(0.19) benign(0.012) TCGA-EI-6507-01 2 11765397 11765397 C T GREB1 Missense_Mutation p.A1422V 0.22 tolerated(0.73) probably_damaging(0.915) TCGA-EI-6507-01 2 124783055 124783055 G A CNTNAP5 5'UTR 0.38 TCGA-EI-6507-01 2 128342402 128342402 A G MYO7B Missense_Mutation p.N535S 0.25 tolerated(0.25) benign(0.15) TCGA-EI-6507-01 2 128409270 128409270 C - GPR17 Frame_Shift_Del p.S351Afs*11 0.25 TCGA-EI-6507-01 2 128460904 128460904 T C WDR33 3'UTR 0.27 TCGA-EI-6507-01 2 12880639 12880639 C T TRIB2 Missense_Mutation p.R251W 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 2 130872806 130872806 T - POTEF Frame_Shift_Del p.K206Rfs*5 0.23 TCGA-EI-6507-01 2 132273186 132273186 G A AC093838.4 RNA 0.27 TCGA-EI-6507-01 2 1426879 1426879 G A TPO Missense_Mutation p.A53T 0.12 deleterious(0.03) benign(0.187) TCGA-EI-6507-01 2 148657448 148657448 C A ACVR2A Missense_Mutation p.P170H 0.07 tolerated(1) benign(0.02) TCGA-EI-6507-01 2 152107556 152107556 C T RBM43 Missense_Mutation p.C313Y 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-EI-6507-01 2 152506778 152506778 C T NEB Missense_Mutation p.R2448H 0.30 probably_damaging(1) TCGA-EI-6507-01 2 158980303 158980303 A - UPP2 Frame_Shift_Del p.K295Sfs*2 0.18 TCGA-EI-6507-01 2 160053150 160053150 C T TANC1 Missense_Mutation p.A1004V 0.15 tolerated(0.09) probably_damaging(0.977) TCGA-EI-6507-01 2 16085728 16085728 C T MYCN Missense_Mutation p.R302C 0.26 deleterious(0.02) possibly_damaging(0.761) TCGA-EI-6507-01 2 16086237 16086237 A G MYCN 3'UTR 0.12 TCGA-EI-6507-01 2 163044771 163044771 A G FAP Silent p.G574G 0.24 TCGA-EI-6507-01 2 164468132 164468132 T - FIGN Frame_Shift_Del p.K70Nfs*29 0.22 TCGA-EI-6507-01 2 167108273 167108273 A G SCN9A Splice_Site p.X1147_splice 0.16 TCGA-EI-6507-01 2 170003400 170003400 G A LRP2 Silent p.R4220R 0.27 TCGA-EI-6507-01 2 170374733 170374734 - A KLHL41 Frame_Shift_Ins p.G473Rfs*22 0.15 TCGA-EI-6507-01 2 170843230 170843230 T C UBR3 Missense_Mutation p.V1237A 0.25 deleterious(0.04) probably_damaging(0.98) TCGA-EI-6507-01 2 171573923 171573923 G A SP5 3'UTR 0.28 TCGA-EI-6507-01 2 175287696 175287696 G A SCRN3 Missense_Mutation p.A280T 0.26 deleterious(0) possibly_damaging(0.461) TCGA-EI-6507-01 2 176988295 176988295 C T HOXD9 Nonsense_Mutation p.Q267* 0.23 TCGA-EI-6507-01 2 179214085 179214085 G A OSBPL6 Silent p.L399L 0.29 TCGA-EI-6507-01 2 179485519 179485519 T C TTN Missense_Mutation p.D15273G 0.23 TCGA-EI-6507-01 2 179486228 179486228 C T TTN Missense_Mutation p.R15108Q 0.19 TCGA-EI-6507-01 2 179598339 179598339 A C TTN Splice_Site p.X5259_splice 0.16 TCGA-EI-6507-01 2 182322426 182322426 C T ITGA4 Silent p.A15A 0.21 TCGA-EI-6507-01 2 183604870 183604870 T - DNAJC10 Intron 0.26 TCGA-EI-6507-01 2 196571486 196571486 G A SLC39A10 Missense_Mutation p.A455T 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 2 196651819 196651819 A T DNAH7 Missense_Mutation p.L3598Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-EI-6507-01 2 197183694 197183694 G A HECW2 Silent p.C640C 0.10 TCGA-EI-6507-01 2 202002841 202002841 G A CFLAR Intron 0.39 TCGA-EI-6507-01 2 202139625 202139626 - G CASP8 Frame_Shift_Ins p.V264Gfs*13 0.22 TCGA-EI-6507-01 2 203972179 203972179 C T NBEAL1 Missense_Mutation p.L407F 0.26 tolerated(0.98) benign(0.001) TCGA-EI-6507-01 2 20402090 20402090 C - SDC1 3'UTR 0.26 TCGA-EI-6507-01 2 210888754 210888754 T A KANSL1L Intron 0.20 TCGA-EI-6507-01 2 21252523 21252523 C T APOB Silent p.E535E 0.26 TCGA-EI-6507-01 2 216248174 216248174 C T FN1 Missense_Mutation p.D1643N 0.26 deleterious(0.04) benign(0.128) TCGA-EI-6507-01 2 219296776 219296776 G A VIL1 Missense_Mutation p.R404H 0.27 deleterious(0.05) probably_damaging(0.987) TCGA-EI-6507-01 2 219903670 219903672 AGG - CCDC108 In_Frame_Del p.L34del 0.24 TCGA-EI-6507-01 2 220085973 220085973 G A ATG9A Missense_Mutation p.R733W 0.33 tolerated(0.09) benign(0.332) TCGA-EI-6507-01 2 220402875 220402875 G A ASIC4 3'UTR 0.21 TCGA-EI-6507-01 2 220470776 220470776 C T STK11IP Missense_Mutation p.R293C 0.27 deleterious(0.03) probably_damaging(0.949) TCGA-EI-6507-01 2 220480910 220480910 C T STK11IP Nonsense_Mutation p.R1099* 0.27 TCGA-EI-6507-01 2 222365809 222365809 C A EPHA4 Nonsense_Mutation p.G303* 0.21 TCGA-EI-6507-01 2 223386531 223386531 C - SGPP2 Frame_Shift_Del p.R143Vfs*8 0.09 TCGA-EI-6507-01 2 228884641 228884641 C A SPHKAP Missense_Mutation p.R310I 0.27 tolerated(0.06) benign(0.01) TCGA-EI-6507-01 2 231266129 231266129 T - SP140L Frame_Shift_Del p.F492Lfs*17 0.21 TCGA-EI-6507-01 2 231774624 231774624 C T GPR55 3'UTR 0.25 TCGA-EI-6507-01 2 233272463 233272463 C T ALPPL2 Missense_Mutation p.R154W 0.24 tolerated(0.29) benign(0.037) TCGA-EI-6507-01 2 233408008 233408008 G A CHRNG Missense_Mutation p.A277T 0.36 deleterious(0.02) benign(0.375) TCGA-EI-6507-01 2 233625255 233625255 C T GIGYF2 Nonsense_Mutation p.R149* 0.13 TCGA-EI-6507-01 2 239162337 239162337 G T PER2 Missense_Mutation p.P776H 0.37 tolerated(0.08) possibly_damaging(0.883) TCGA-EI-6507-01 2 239353021 239353021 C A ASB1 Missense_Mutation p.P178H 0.23 deleterious(0) possibly_damaging(0.705) TCGA-EI-6507-01 2 23977138 23977138 C T ATAD2B Missense_Mutation p.A1416T 0.34 tolerated(0.9) benign(0) TCGA-EI-6507-01 2 241463399 241463399 C T ANKMY1 Missense_Mutation p.A490T 0.16 deleterious(0.02) possibly_damaging(0.465) TCGA-EI-6507-01 2 241979558 241979558 C T SNED1 Missense_Mutation p.A371V 0.29 tolerated(0.5) possibly_damaging(0.879) TCGA-EI-6507-01 2 242276872 242276872 G A SEPT2 Silent p.R139R 0.25 TCGA-EI-6507-01 2 242350516 242350516 C T FARP2 Missense_Mutation p.A160V 0.22 deleterious(0.05) benign(0.178) TCGA-EI-6507-01 2 24302397 24302397 C T TP53I3 Missense_Mutation p.D245N 0.28 tolerated(0.52) benign(0.001) TCGA-EI-6507-01 2 25457122 25457122 G A DNMT3A 3'UTR 0.15 TCGA-EI-6507-01 2 26536276 26536276 G A GPR113 Missense_Mutation p.A481V 0.34 tolerated(0.37) benign(0.019) TCGA-EI-6507-01 2 27423973 27423973 G A SLC5A6 Nonsense_Mutation p.R553* 0.28 TCGA-EI-6507-01 2 27440847 27440848 - C CAD Frame_Shift_Ins p.D65Rfs*2 0.23 TCGA-EI-6507-01 2 27684212 27684212 C T IFT172 Missense_Mutation p.R789Q 0.26 tolerated(0.63) benign(0.005) TCGA-EI-6507-01 2 27800454 27800454 T C C2orf16 Missense_Mutation p.S339P 0.21 tolerated(0.28) possibly_damaging(0.601) TCGA-EI-6507-01 2 29226542 29226542 G A FAM179A Missense_Mutation p.R275H 0.37 tolerated(0.39) benign(0.001) TCGA-EI-6507-01 2 31154942 31154942 C T GALNT14 Silent p.T355T 0.13 TCGA-EI-6507-01 2 3197910 3197910 G A TSSC1 Silent p.H227H 0.23 TCGA-EI-6507-01 2 32157135 32157135 C T MEMO1 Splice_Site p.X71_splice 0.26 TCGA-EI-6507-01 2 33745641 33745641 T C RASGRP3 Silent p.P86P 0.26 TCGA-EI-6507-01 2 3651918 3651918 G A COLEC11 Silent p.L10L 0.34 TCGA-EI-6507-01 2 37480453 37480453 C T PRKD3 Missense_Mutation p.R847H 0.20 deleterious(0.01) possibly_damaging(0.775) TCGA-EI-6507-01 2 43452581 43452582 - C ZFP36L2 Frame_Shift_Ins p.D121Gfs*5 0.23 TCGA-EI-6507-01 2 43571279 43571279 T C THADA Missense_Mutation p.K1442R 0.26 tolerated(0.38) benign(0.1) TCGA-EI-6507-01 2 50733738 50733738 G T NRXN1 Missense_Mutation p.L838I 0.25 tolerated(0.12) benign(0.116) TCGA-EI-6507-01 2 50779939 50779939 G A NRXN1 Silent p.G555G 0.23 TCGA-EI-6507-01 2 55561838 55561838 G A CCDC88A Nonsense_Mutation p.R707* 0.22 TCGA-EI-6507-01 2 5832916 5832916 G C SOX11 Silent p.T21T 0.25 TCGA-EI-6507-01 2 61245253 61245253 G - PUS10 5'UTR 0.22 TCGA-EI-6507-01 2 62067077 62067077 T A FAM161A Silent p.R354R 0.24 TCGA-EI-6507-01 2 63486507 63486507 G A WDPCP Missense_Mutation p.A617V 0.21 tolerated(0.33) probably_damaging(0.968) TCGA-EI-6507-01 2 68691402 68691403 - T FBXO48 Frame_Shift_Ins p.I136Nfs*35 0.18 TCGA-EI-6507-01 2 72945272 72945272 C T EXOC6B Missense_Mutation p.R210H 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-EI-6507-01 2 73677074 73677074 C A ALMS1 Silent p.T1139T 0.29 TCGA-EI-6507-01 2 74755993 74755993 C - AUP1 Frame_Shift_Del p.E137Sfs*63 0.23 TCGA-EI-6507-01 2 75720724 75720724 G A EVA1A Nonsense_Mutation p.R33* 0.10 TCGA-EI-6507-01 2 87069262 87069263 - C CD8B Intron 0.23 TCGA-EI-6507-01 2 88383972 88383972 C G SMYD1 Missense_Mutation p.A92G 0.27 deleterious(0.03) possibly_damaging(0.582) TCGA-EI-6507-01 2 88482321 88482321 C A THNSL2 Silent p.L302L 0.14 TCGA-EI-6507-01 2 89568214 89568214 C G IGKV1-33 Missense_Mutation p.A7P 0.22 deleterious(0.03) possibly_damaging(0.632) TCGA-EI-6507-01 2 9528650 9528650 G A ASAP2 Silent p.P786P 0.12 TCGA-EI-6507-01 2 95539191 95539191 G T TEKT4 Intron 0.24 TCGA-EI-6507-01 2 95753233 95753233 G - MRPS5 Frame_Shift_Del p.R388Gfs*4 0.26 TCGA-EI-6507-01 2 96780980 96780980 C T ADRA2B Silent p.E303E 0.25 TCGA-EI-6507-01 2 97274706 97274708 CTT - KANSL3 In_Frame_Del p.K493del 0.23 TCGA-EI-6507-01 2 99342866 99342866 A - MGAT4A 5'UTR 0.18 TCGA-EI-6507-01 3 10143048 10143049 - T FANCD2 3'Flank 0.16 TCGA-EI-6507-01 3 105400216 105400216 A T CBLB Intron 0.28 TCGA-EI-6507-01 3 107884331 107884331 G A IFT57 Nonsense_Mutation p.R331* 0.15 TCGA-EI-6507-01 3 108324275 108324275 T - DZIP3 Frame_Shift_Del p.F9Lfs*2 0.21 TCGA-EI-6507-01 3 108677968 108677968 C A MORC1 Splice_Site p.X934_splice 0.24 TCGA-EI-6507-01 3 111313050 111313050 T C ZBED2 5'UTR 0.26 TCGA-EI-6507-01 3 112260669 112260669 T G ATG3 Silent p.G152G 0.13 TCGA-EI-6507-01 3 118917947 118917947 G - UPK1B Frame_Shift_Del p.V233Lfs*53 0.25 TCGA-EI-6507-01 3 119300918 119300918 G A ADPRH Intron 0.22 TCGA-EI-6507-01 3 122176691 122176691 C T KPNA1 Intron 0.33 TCGA-EI-6507-01 3 122287438 122287438 C T DTX3L Missense_Mutation p.H168Y 0.23 tolerated(1) benign(0.002) TCGA-EI-6507-01 3 122446781 122446781 C T PARP14 Silent p.S1688S 0.27 TCGA-EI-6507-01 3 123022010 123022010 G A ADCY5 Silent p.S872S 0.27 TCGA-EI-6507-01 3 124390543 124390543 G T KALRN Missense_Mutation p.R338M 0.27 tolerated(0.1) benign(0.305) TCGA-EI-6507-01 3 125828825 125828825 G A ALDH1L1 Missense_Mutation p.A780V 0.37 deleterious(0) benign(0.28) TCGA-EI-6507-01 3 126137577 126137577 G A CCDC37 Missense_Mutation p.V204I 0.25 deleterious(0) benign(0.001) TCGA-EI-6507-01 3 127800027 127800027 G A RUVBL1 3'UTR 0.33 TCGA-EI-6507-01 3 128628711 128628711 C T ACAD9 Intron 0.42 TCGA-EI-6507-01 3 128781094 128781094 C T GP9 Missense_Mutation p.A171V 0.15 tolerated_low_confidence(0.8) unknown(0) TCGA-EI-6507-01 3 12940817 12940817 C T IQSEC1 3'UTR 0.39 TCGA-EI-6507-01 3 129547253 129547253 A - TMCC1 5'UTR 0.16 TCGA-EI-6507-01 3 130437345 130437345 C T PIK3R4 Missense_Mutation p.R672H 0.22 deleterious(0) possibly_damaging(0.858) TCGA-EI-6507-01 3 131220689 131220689 T - MRPL3 Intron 0.30 TCGA-EI-6507-01 3 13407493 13407493 C T NUP210 Missense_Mutation p.V629I 0.26 tolerated(0.29) benign(0.005) TCGA-EI-6507-01 3 134851657 134851657 A G EPHB1 Missense_Mutation p.T355A 0.21 tolerated(0.12) benign(0.002) TCGA-EI-6507-01 3 141497143 141497143 C T GRK7 Missense_Mutation p.A6V 0.26 deleterious(0) benign(0.094) TCGA-EI-6507-01 3 142840585 142840585 C T CHST2 Silent p.F309F 0.38 TCGA-EI-6507-01 3 147108822 147108822 C T ZIC4 Silent p.S350S 0.09 TCGA-EI-6507-01 3 150299509 150299510 - A EIF2A Frame_Shift_Ins p.I537Nfs*83 0.23 TCGA-EI-6507-01 3 150644691 150644691 A G CLRN1 3'Flank 0.32 TCGA-EI-6507-01 3 154017707 154017707 G A DHX36 Missense_Mutation p.A490V 0.17 deleterious(0) probably_damaging(0.997) TCGA-EI-6507-01 3 155393921 155393921 G - PLCH1 5'Flank 0.14 TCGA-EI-6507-01 3 160151642 160151642 T - SMC4 3'UTR 0.18 TCGA-EI-6507-01 3 16237352 16237352 C T GALNT15 Missense_Mutation p.R209W 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 3 167185020 167185021 - T SERPINI2 Frame_Shift_Ins p.Q101Tfs*6 0.11 TCGA-EI-6507-01 3 170002299 170002299 G T PRKCI Missense_Mutation p.G373V 0.12 deleterious(0.01) probably_damaging(1) TCGA-EI-6507-01 3 170781745 170781745 A - TNIK Frame_Shift_Del p.F1336Lfs*15 0.19 TCGA-EI-6507-01 3 174577159 174577159 C G NAALADL2 5'UTR 0.19 TCGA-EI-6507-01 3 178968569 178968569 G T KCNMB3 Missense_Mutation p.F74L 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 3 179526183 179526183 G A PEX5L Silent p.A465A 0.37 TCGA-EI-6507-01 3 182662804 182662804 G A DCUN1D1 3'UTR 0.30 TCGA-EI-6507-01 3 184044407 184044407 C A EIF4G1 Silent p.P1112P 0.29 TCGA-EI-6507-01 3 187003668 187003668 T C MASP1 Missense_Mutation p.Y61C 0.40 deleterious(0) probably_damaging(0.995) TCGA-EI-6507-01 3 193361790 193361790 A G OPA1 Missense_Mutation p.I484V 0.17 tolerated(0.39) benign(0.403) TCGA-EI-6507-01 3 197239178 197239178 G A BDH1 Missense_Mutation p.P207L 0.30 deleterious(0.02) probably_damaging(0.98) TCGA-EI-6507-01 3 32932173 32932173 G T TRIM71 Missense_Mutation p.G493C 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 3 32932705 32932705 C A TRIM71 Missense_Mutation p.A670D 0.17 deleterious(0) probably_damaging(0.995) TCGA-EI-6507-01 3 33427020 33427020 G A FBXL2 Missense_Mutation p.A398T 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-EI-6507-01 3 37565104 37565104 T C ITGA9 Splice_Site p.X443_splice 0.27 TCGA-EI-6507-01 3 38645239 38645239 G A SCN5A Silent p.L618L 0.29 TCGA-EI-6507-01 3 39142260 39142260 C T GORASP1 Missense_Mutation p.A182T 0.29 tolerated(0.07) benign(0.255) TCGA-EI-6507-01 3 40231480 40231480 C T MYRIP Silent p.S397S 0.21 TCGA-EI-6507-01 3 44684881 44684881 G T ZNF197 Silent p.R753R 0.25 TCGA-EI-6507-01 3 45038682 45038682 G A EXOSC7 Missense_Mutation p.D120N 0.34 tolerated(0.1) possibly_damaging(0.728) TCGA-EI-6507-01 3 45785347 45785347 A G SACM1L 3'UTR 0.33 TCGA-EI-6507-01 3 45879492 45879492 G A LZTFL1 Missense_Mutation p.R19C 0.25 deleterious(0) probably_damaging(0.954) TCGA-EI-6507-01 3 48697291 48697291 G A CELSR3 Missense_Mutation p.T926I 0.22 deleterious(0.01) probably_damaging(1) TCGA-EI-6507-01 3 49042375 49042375 C G P4HTM Silent p.G323G 0.17 TCGA-EI-6507-01 3 49065922 49065922 G - IMPDH2 Frame_Shift_Del p.P64Hfs*17 0.22 TCGA-EI-6507-01 3 49689007 49689007 C T BSN Missense_Mutation p.A673V 0.07 unknown(0) TCGA-EI-6507-01 3 49692058 49692058 C T BSN Missense_Mutation p.A1690V 0.22 unknown(0) TCGA-EI-6507-01 3 49720019 49720019 C T APEH Missense_Mutation p.A578V 0.17 tolerated(0.06) benign(0.005) TCGA-EI-6507-01 3 49831425 49831425 G A CDHR4 Silent p.L432L 0.23 TCGA-EI-6507-01 3 49837220 49837220 A G CDHR4 Missense_Mutation p.F9S 0.13 tolerated(0.23) benign(0.001) TCGA-EI-6507-01 3 50357347 50357347 G A HYAL2 Missense_Mutation p.R192C 0.37 deleterious(0) probably_damaging(0.982) TCGA-EI-6507-01 3 50357873 50357873 C A HYAL2 Silent p.A16A 0.30 TCGA-EI-6507-01 3 51418780 51418780 C T DOCK3 Silent p.C1961C 0.19 TCGA-EI-6507-01 3 51743379 51743379 C T GRM2 Missense_Mutation p.A127V 0.25 tolerated(0.07) possibly_damaging(0.698) TCGA-EI-6507-01 3 52436345 52436345 G A BAP1 Missense_Mutation p.R717W 0.23 tolerated(0.06) benign(0.15) TCGA-EI-6507-01 3 52518632 52518632 G A NISCH Silent p.L544L 0.25 TCGA-EI-6507-01 3 52840932 52840932 G A ITIH3 Missense_Mutation p.G691E 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 3 56598018 56598018 A - CCDC66 Frame_Shift_Del p.K138Nfs*8 0.24 TCGA-EI-6507-01 3 57132118 57132118 G A IL17RD Missense_Mutation p.S538L 0.24 deleterious(0) benign(0.089) TCGA-EI-6507-01 3 57312659 57312659 C A ASB14 Missense_Mutation p.A393S 0.07 deleterious(0.01) probably_damaging(0.951) TCGA-EI-6507-01 3 65422910 65422912 TCT - MAGI1 In_Frame_Del p.E427del 0.20 TCGA-EI-6507-01 3 66421709 66421709 G A SLC25A26 Intron 0.26 TCGA-EI-6507-01 3 66430822 66430822 G A LRIG1 Silent p.R1049R 0.24 TCGA-EI-6507-01 3 9714391 9714391 G A MTMR14 Missense_Mutation p.D234N 0.10 deleterious(0) probably_damaging(0.98) TCGA-EI-6507-01 3 98002008 98002008 A - OR5H2 Frame_Shift_Del p.N94Tfs*3 0.21 TCGA-EI-6507-01 4 108853210 108853210 C T CYP2U1 Silent p.R137R 0.30 TCGA-EI-6507-01 4 110882121 110882121 C T EGF Missense_Mutation p.L389F 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 4 114276086 114276087 - CA ANK2 Frame_Shift_Ins p.R2106Tfs*51 0.26 TCGA-EI-6507-01 4 119678929 119678929 T C SEC24D Silent p.G456G 0.23 TCGA-EI-6507-01 4 124235305 124235305 T - SPATA5 3'UTR 0.21 TCGA-EI-6507-01 4 126238751 126238751 C T FAT4 Silent p.S395S 0.23 TCGA-EI-6507-01 4 126371860 126371860 C T FAT4 Missense_Mutation p.A3230V 0.22 probably_damaging(0.992) TCGA-EI-6507-01 4 129208629 129208629 T G PGRMC2 Missense_Mutation p.E130A 0.11 tolerated(0.23) benign(0.038) TCGA-EI-6507-01 4 135122231 135122231 G - PABPC4L Frame_Shift_Del p.H40Tfs*20 0.17 TCGA-EI-6507-01 4 141543531 141543531 G A TBC1D9 Missense_Mutation p.R1207W 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.634) TCGA-EI-6507-01 4 144135364 144135364 G A USP38 Silent p.L745L 0.26 TCGA-EI-6507-01 4 148406801 148406801 C T EDNRA 5'UTR 0.23 TCGA-EI-6507-01 4 153249360 153249361 - T FBXW7 Frame_Shift_Ins p.R473Kfs*4 0.21 TCGA-EI-6507-01 4 15607185 15607185 C G FBXL5 3'UTR 0.47 TCGA-EI-6507-01 4 159052022 159052022 C A FAM198B Missense_Mutation p.R431M 0.19 deleterious(0) probably_damaging(0.948) TCGA-EI-6507-01 4 169846209 169846209 C T PALLD Missense_Mutation p.T1113I 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 4 170663195 170663195 G A C4orf27 Silent p.N187N 0.22 TCGA-EI-6507-01 4 177069341 177069341 C T WDR17 Silent p.H608H 0.22 TCGA-EI-6507-01 4 184431783 184431783 A G ING2 Missense_Mutation p.D174G 0.28 tolerated(0.5) benign(0.002) TCGA-EI-6507-01 4 184828090 184828090 G A STOX2 Silent p.S49S 0.35 TCGA-EI-6507-01 4 26685302 26685302 C A TBC1D19 Silent p.V274V 0.29 TCGA-EI-6507-01 4 2952780 2952780 A - NOP14 Intron 0.22 TCGA-EI-6507-01 4 3591652 3591652 C T LINC00955 3'UTR 0.25 TCGA-EI-6507-01 4 36069878 36069878 C A ARAP2 Missense_Mutation p.R1589M 0.17 deleterious(0) benign(0.423) TCGA-EI-6507-01 4 39929724 39929724 G T PDS5A Missense_Mutation p.L67I 0.29 tolerated(1) possibly_damaging(0.476) TCGA-EI-6507-01 4 40104571 40104571 C T N4BP2 Missense_Mutation p.A369V 0.19 tolerated(0.66) benign(0.175) TCGA-EI-6507-01 4 40440535 40440535 G A RBM47 Missense_Mutation p.R126C 0.36 deleterious(0) possibly_damaging(0.88) TCGA-EI-6507-01 4 40947013 40947013 C A APBB2 Missense_Mutation p.G305W 0.28 deleterious(0) probably_damaging(0.993) TCGA-EI-6507-01 4 46060366 46060366 T - GABRG1 Frame_Shift_Del p.I262Ffs*5 0.15 TCGA-EI-6507-01 4 53468064 53468064 G A USP46 Silent p.D293D 0.19 TCGA-EI-6507-01 4 5458554 5458554 G A STK32B Silent p.S229S 0.16 TCGA-EI-6507-01 4 54968098 54968098 C A GSX2 3'UTR 0.33 TCGA-EI-6507-01 4 60042 60042 C T ZNF595 Silent p.P74P 0.06 TCGA-EI-6507-01 4 62801657 62801657 A G LPHN3 Silent p.R703R 0.22 TCGA-EI-6507-01 4 672778 672778 G A MYL5 Missense_Mutation p.G48D 0.30 deleterious(0) probably_damaging(0.926) TCGA-EI-6507-01 4 68338118 68338118 C T CENPC 3'UTR 0.35 TCGA-EI-6507-01 4 70346336 70346336 C T UGT2B4 3'UTR 0.29 TCGA-EI-6507-01 4 70710022 70710022 A G SULT1E1 Missense_Mutation p.L210P 0.22 deleterious(0.01) probably_damaging(1) TCGA-EI-6507-01 4 71388495 71388495 C T AMTN Silent p.L26L 0.24 TCGA-EI-6507-01 4 727856 727856 C T PCGF3 Intron 0.19 TCGA-EI-6507-01 4 79851421 79851422 - T PAQR3 Frame_Shift_Ins p.T136Nfs*32 0.24 TCGA-EI-6507-01 4 80899192 80899192 G T ANTXR2 Missense_Mutation p.P439H 0.25 tolerated(0.1) benign(0.049) TCGA-EI-6507-01 4 83372207 83372207 C T ENOPH1 Silent p.D66D 0.35 TCGA-EI-6507-01 4 83905824 83905824 G T LIN54 Silent p.A58A 0.25 TCGA-EI-6507-01 4 99407996 99407996 C T TSPAN5 Missense_Mutation p.G58S 0.29 deleterious(0.04) benign(0.435) TCGA-EI-6507-01 5 102537525 102537525 C T PPIP5K2 3'UTR 0.28 TCGA-EI-6507-01 5 102612501 102612501 A - C5orf30 3'UTR 0.19 TCGA-EI-6507-01 5 115782764 115782765 - G SEMA6A Frame_Shift_Ins p.K880Qfs*36 0.22 TCGA-EI-6507-01 5 121411122 121411122 G T LOX Silent p.S285S 0.29 TCGA-EI-6507-01 5 1216715 1216715 C T SLC6A19 Silent p.N310N 0.19 TCGA-EI-6507-01 5 125939833 125939833 C T PHAX Missense_Mutation p.A223V 0.24 tolerated(0.05) benign(0.026) TCGA-EI-6507-01 5 132037846 132037846 C T KIF3A Missense_Mutation p.R579Q 0.34 deleterious(0.01) possibly_damaging(0.688) TCGA-EI-6507-01 5 132159097 132159097 G A SHROOM1 Missense_Mutation p.R691C 0.26 deleterious(0.01) possibly_damaging(0.75) TCGA-EI-6507-01 5 134332023 134332023 G T CATSPER3 Missense_Mutation p.D105Y 0.19 deleterious(0) probably_damaging(0.989) TCGA-EI-6507-01 5 134364640 134364640 C T PITX1 Silent p.S258S 0.29 TCGA-EI-6507-01 5 134724634 134724634 G A H2AFY Silent p.A50A 0.20 TCGA-EI-6507-01 5 135692533 135692533 G A TRPC7 Silent p.H181H 0.15 TCGA-EI-6507-01 5 137034039 137034039 C T KLHL3 Silent p.T100T 0.24 TCGA-EI-6507-01 5 137621245 137621245 T C CDC25C 3'UTR 0.33 TCGA-EI-6507-01 5 13913866 13913866 C T DNAH5 Missense_Mutation p.A508T 0.33 benign(0.001) TCGA-EI-6507-01 5 139907857 139907857 A - ANKHD1 Frame_Shift_Del p.N1777Ifs*20 0.18 TCGA-EI-6507-01 5 140215694 140215694 G A PCDHA7 Missense_Mutation p.A576T 0.11 tolerated_low_confidence(0.13) benign(0.007) TCGA-EI-6507-01 5 140262567 140262567 C T PCDHA13 Silent p.N238N 0.26 TCGA-EI-6507-01 5 140537133 140537133 G T PCDHB17 Silent p.S519S 0.09 TCGA-EI-6507-01 5 140559696 140559696 C T PCDHB8 Missense_Mutation p.A694V 0.22 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-EI-6507-01 5 140625390 140625390 G A PCDHB15 Missense_Mutation p.G82R 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EI-6507-01 5 140627127 140627127 C T PCDHB15 Missense_Mutation p.L661F 0.14 deleterious_low_confidence(0.02) possibly_damaging(0.613) TCGA-EI-6507-01 5 140712129 140712129 G A PCDHGA1 Silent p.V626V 0.31 TCGA-EI-6507-01 5 140754304 140754304 C T PCDHGA6 Silent p.G218G 0.23 TCGA-EI-6507-01 5 140812235 140812235 G A PCDHGA12 Missense_Mutation p.A637T 0.28 deleterious_low_confidence(0.05) benign(0.089) TCGA-EI-6507-01 5 142661457 142661457 C T NR3C1 Silent p.K778K 0.27 TCGA-EI-6507-01 5 145562120 145562120 G A LARS 5'UTR 0.19 TCGA-EI-6507-01 5 1463838 1463838 G A LPCAT1 Silent p.N511N 0.28 TCGA-EI-6507-01 5 147715164 147715164 C A SPINK9 5'UTR 0.29 TCGA-EI-6507-01 5 148687138 148687138 G A AFAP1L1 Missense_Mutation p.A237T 0.34 tolerated(0.49) probably_damaging(1) TCGA-EI-6507-01 5 1632815 1632815 G A RP11-43F13.1 RNA 0.21 TCGA-EI-6507-01 5 167545382 167545382 C T TENM2 Silent p.C633C 0.25 TCGA-EI-6507-01 5 167626066 167626066 T G TENM2 Missense_Mutation p.S1037A 0.17 deleterious(0.04) probably_damaging(0.992) TCGA-EI-6507-01 5 167858408 167858408 G A WWC1 Missense_Mutation p.D747N 0.30 tolerated(0.11) probably_damaging(1) TCGA-EI-6507-01 5 169812465 169812465 A G KCNMB1 5'UTR 0.18 TCGA-EI-6507-01 5 171488267 171488267 C A STK10 Silent p.R696R 0.25 TCGA-EI-6507-01 5 171533635 171533635 C T STK10 Silent p.T259T 0.15 TCGA-EI-6507-01 5 172341786 172341786 T C ERGIC1 Missense_Mutation p.I107T 0.26 tolerated(0.42) benign(0.004) TCGA-EI-6507-01 5 17276584 17276584 T C BASP1 3'UTR 0.18 TCGA-EI-6507-01 5 173372101 173372101 C T CPEB4 Nonsense_Mutation p.R472* 0.25 TCGA-EI-6507-01 5 176733402 176733402 G A PRELID1 Intron 0.21 TCGA-EI-6507-01 5 176886218 176886218 C T DBN1 Missense_Mutation p.R338Q 0.24 deleterious(0.04) probably_damaging(0.988) TCGA-EI-6507-01 5 177059551 177059551 G A RP11-1277A3.2 Intron 0.15 TCGA-EI-6507-01 5 177633743 177633745 AGA - HNRNPAB In_Frame_Del p.K131del 0.30 TCGA-EI-6507-01 5 178413579 178413579 G T GRM6 Missense_Mutation p.P559H 0.25 tolerated(0.21) probably_damaging(0.928) TCGA-EI-6507-01 5 178460359 178460359 C T ZNF879 Silent p.G470G 0.25 TCGA-EI-6507-01 5 178506725 178506725 G A ZNF354C Missense_Mutation p.R431Q 0.28 tolerated(1) benign(0.223) TCGA-EI-6507-01 5 178507106 178507106 C G ZNF354C 3'UTR 0.24 TCGA-EI-6507-01 5 180277048 180277049 CA - ZFP62 Frame_Shift_Del p.C482Wfs*9 0.22 TCGA-EI-6507-01 5 180687262 180687262 G A TRIM52 Nonsense_Mutation p.Q185* 0.28 TCGA-EI-6507-01 5 26906946 26906946 A G CDH9 Silent p.G175G 0.26 TCGA-EI-6507-01 5 32052764 32052764 G T PDZD2 Missense_Mutation p.Q571H 0.12 tolerated(0.18) benign(0.015) TCGA-EI-6507-01 5 32058122 32058122 G T PDZD2 Missense_Mutation p.G705C 0.22 deleterious(0) probably_damaging(0.936) TCGA-EI-6507-01 5 36679948 36679948 G - SLC1A3 Frame_Shift_Del p.T362Pfs*32 0.09 TCGA-EI-6507-01 5 37064899 37064899 A - NIPBL Frame_Shift_Del p.I2776Lfs*3 0.22 TCGA-EI-6507-01 5 37195960 37195960 C A C5orf42 Missense_Mutation p.G1271C 0.12 deleterious(0) probably_damaging(0.994) TCGA-EI-6507-01 5 39202038 39202038 G - FYB Frame_Shift_Del p.P352Rfs*27 0.17 TCGA-EI-6507-01 5 43506369 43506369 C A C5orf34 Missense_Mutation p.R138I 0.23 deleterious(0.02) possibly_damaging(0.555) TCGA-EI-6507-01 5 54401317 54401317 T A GZMA Missense_Mutation p.I29N 0.19 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 5 64966060 64966060 G A SGTB 3'UTR 0.34 TCGA-EI-6507-01 5 70672166 70672167 - T RP11-136K7.2 Intron 0.14 TCGA-EI-6507-01 5 71496022 71496022 C A MAP1B Silent p.S2280S 0.26 TCGA-EI-6507-01 5 75866460 75866460 T C IQGAP2 Missense_Mutation p.M120T 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 5 76717755 76717755 G A PDE8B Missense_Mutation p.R787H 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 5 76989061 76989061 T A TBCA Intron 0.31 TCGA-EI-6507-01 5 7802415 7802415 G A ADCY2 Missense_Mutation p.V905M 0.19 deleterious(0.01) possibly_damaging(0.874) TCGA-EI-6507-01 5 78533002 78533002 G A JMY Missense_Mutation p.V177M 0.28 tolerated_low_confidence(0.2) benign(0.005) TCGA-EI-6507-01 5 81283461 81283461 A T ATG10 Missense_Mutation p.Q24H 0.24 deleterious(0) possibly_damaging(0.778) TCGA-EI-6507-01 5 81354423 81354423 T C ATG10 Splice_Site p.X72_splice 0.29 TCGA-EI-6507-01 5 82785939 82785939 G A VCAN Silent p.P31P 0.29 TCGA-EI-6507-01 5 83402565 83402565 C T EDIL3 Missense_Mutation p.G185R 0.26 deleterious(0.02) possibly_damaging(0.857) TCGA-EI-6507-01 5 90106134 90106134 T A GPR98 Missense_Mutation p.D5019E 0.23 benign(0.009) TCGA-EI-6507-01 5 93788720 93788720 A - KIAA0825 Frame_Shift_Del p.F767Lfs*27 0.22 TCGA-EI-6507-01 6 110423411 110423411 G A WASF1 Missense_Mutation p.T301I 0.29 tolerated(0.15) unknown(0) TCGA-EI-6507-01 6 114379277 114379277 T C HS3ST5 Missense_Mutation p.Q62R 0.29 tolerated(0.3) benign(0.23) TCGA-EI-6507-01 6 116565262 116565263 AA - NT5DC1 3'UTR 0.27 TCGA-EI-6507-01 6 117884480 117884480 C T GOPC Silent p.P442P 0.23 TCGA-EI-6507-01 6 128294818 128294818 A T PTPRK Missense_Mutation p.I1381N 0.29 deleterious(0) possibly_damaging(0.564) TCGA-EI-6507-01 6 131995472 131995472 T C ENPP3 Intron 0.18 TCGA-EI-6507-01 6 135521306 135521306 A G MYB Missense_Mutation p.Q598R 0.22 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 6 137330519 137330519 T C IL20RA Missense_Mutation p.M172V 0.31 deleterious(0.01) possibly_damaging(0.519) TCGA-EI-6507-01 6 142741156 142741156 C T GPR126 Silent p.G1078G 0.05 TCGA-EI-6507-01 6 146276446 146276446 G A SHPRH Missense_Mutation p.R5W 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-EI-6507-01 6 146755713 146755713 C T GRM1 Silent p.D1122D 0.31 TCGA-EI-6507-01 6 147042581 147042581 C A ADGB Missense_Mutation p.L679I 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 6 148865342 148865342 G T SASH1 Missense_Mutation p.E912D 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-EI-6507-01 6 150569938 150569938 G A PPP1R14C Silent p.P160P 0.31 TCGA-EI-6507-01 6 152163847 152163847 G A ESR1 Missense_Mutation p.D190N 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6507-01 6 152470650 152470650 G A SYNE1 Missense_Mutation p.R8202C 0.24 probably_damaging(0.998) TCGA-EI-6507-01 6 155129895 155129895 C T SCAF8 Missense_Mutation p.R397C 0.07 deleterious_low_confidence(0.02) unknown(0) TCGA-EI-6507-01 6 155578072 155578072 C T TIAM2 Silent p.S1641S 0.27 TCGA-EI-6507-01 6 155579134 155579134 G A TFB1M Missense_Mutation p.R293C 0.22 tolerated(0.19) benign(0) TCGA-EI-6507-01 6 157528201 157528201 G A ARID1B Missense_Mutation p.G1976R 0.20 probably_damaging(1) TCGA-EI-6507-01 6 159457199 159457199 G A TAGAP Missense_Mutation p.T619M 0.21 deleterious(0) probably_damaging(0.995) TCGA-EI-6507-01 6 161026186 161026186 T C LPA Missense_Mutation p.Q946R 0.18 tolerated(0.16) benign(0.272) TCGA-EI-6507-01 6 16327163 16327163 G - ATXN1 Frame_Shift_Del p.P460Lfs*6 0.18 TCGA-EI-6507-01 6 163736051 163736051 G A PACRG 3'UTR 0.33 TCGA-EI-6507-01 6 168352692 168352692 A G MLLT4 Missense_Mutation p.K1546R 0.18 tolerated_low_confidence(0.13) benign(0.072) TCGA-EI-6507-01 6 170104189 170104190 - A PHF10 Intron 0.14 TCGA-EI-6507-01 6 170104392 170104392 A G C6orf120 3'UTR 0.33 TCGA-EI-6507-01 6 170104520 170104520 A C C6orf120 3'UTR 0.31 TCGA-EI-6507-01 6 170106039 170106039 G A C6orf120 3'UTR 0.27 TCGA-EI-6507-01 6 1961101 1961101 T A GMDS Nonsense_Mutation p.K149* 0.26 TCGA-EI-6507-01 6 21596335 21596335 G A SOX4 3'UTR 0.15 TCGA-EI-6507-01 6 21598603 21598603 T - SOX4 3'UTR 0.11 TCGA-EI-6507-01 6 25813173 25813173 C T SLC17A1 Silent p.S261S 0.24 TCGA-EI-6507-01 6 26017481 26017481 C T HIST1H1A Silent p.A160A 0.10 TCGA-EI-6507-01 6 26056458 26056458 C T HIST1H1C Missense_Mutation p.A67T 0.18 deleterious(0.04) possibly_damaging(0.672) TCGA-EI-6507-01 6 26393324 26393324 T - BTN2A2 3'UTR 0.18 TCGA-EI-6507-01 6 27440094 27440094 C A ZNF184 5'UTR 0.24 TCGA-EI-6507-01 6 27775621 27775621 C A HIST1H2BL Missense_Mutation p.A22S 0.22 tolerated_low_confidence(0.07) benign(0.16) TCGA-EI-6507-01 6 27783059 27783059 C T HIST1H2BM Missense_Mutation p.R80C 0.26 tolerated_low_confidence(0.1) benign(0.047) TCGA-EI-6507-01 6 304647 304647 T G DUSP22 Missense_Mutation p.I14S 0.07 deleterious(0) possibly_damaging(0.877) TCGA-EI-6507-01 6 30614298 30614298 A G ATAT1 Missense_Mutation p.M370V 0.21 tolerated(0.94) benign(0) TCGA-EI-6507-01 6 31236784 31236784 G T HLA-C 3'UTR 0.11 TCGA-EI-6507-01 6 31599614 31599614 G A PRRC2A Missense_Mutation p.R1055H 0.13 unknown(0) TCGA-EI-6507-01 6 32096713 32096713 T C FKBPL Missense_Mutation p.E282G 0.20 deleterious(0.01) possibly_damaging(0.762) TCGA-EI-6507-01 6 32134573 32134573 C T EGFL8 Missense_Mutation p.A107V 0.37 deleterious(0.05) probably_damaging(0.996) TCGA-EI-6507-01 6 32805679 32805686 AGCCCCGC - TAP2 Frame_Shift_Del p.A109Qfs*55 0.17 TCGA-EI-6507-01 6 32805788 32805788 G - TAP2 Frame_Shift_Del p.L75* 0.23 TCGA-EI-6507-01 6 33179750 33179750 T C RING1 Missense_Mutation p.Y364H 0.09 deleterious(0.03) unknown(0) TCGA-EI-6507-01 6 33287213 33287213 G - DAXX Frame_Shift_Del p.C629Afs*16 0.12 TCGA-EI-6507-01 6 33658852 33658852 C T ITPR3 Silent p.L2397L 0.25 TCGA-EI-6507-01 6 3727804 3727804 C T PXDC1 Missense_Mutation p.V187M 0.25 tolerated_low_confidence(0.07) benign(0.004) TCGA-EI-6507-01 6 41002498 41002498 G A UNC5CL Nonsense_Mutation p.R106* 0.28 TCGA-EI-6507-01 6 44249995 44249995 G A TCTE1 Missense_Mutation p.A383V 0.06 tolerated(0.1) benign(0.091) TCGA-EI-6507-01 6 46669685 46669685 C T TDRD6 3'UTR 0.29 TCGA-EI-6507-01 6 52148119 52148119 C T MCM3 Missense_Mutation p.R100H 0.24 tolerated(0.06) possibly_damaging(0.877) TCGA-EI-6507-01 6 52993597 52993597 T C GCM1 Missense_Mutation p.K240E 0.08 tolerated(0.08) benign(0.008) TCGA-EI-6507-01 6 55925820 55925820 C T COL21A1 Missense_Mutation p.E741K 0.10 tolerated(0.29) possibly_damaging(0.593) TCGA-EI-6507-01 6 6002686 6002686 C A NRN1 Missense_Mutation p.V34F 0.30 deleterious(0) probably_damaging(0.962) TCGA-EI-6507-01 6 62995908 62995908 G A KHDRBS2 5'UTR 0.20 TCGA-EI-6507-01 6 69348612 69348612 T C BAI3 Silent p.Y15Y 0.16 TCGA-EI-6507-01 6 70950433 70950433 C T COL9A1 Missense_Mutation p.A680T 0.20 possibly_damaging(0.472) TCGA-EI-6507-01 6 71235776 71235776 A - FAM135A Frame_Shift_Del p.N999Ifs*5 0.26 TCGA-EI-6507-01 6 72596775 72596775 C - RIMS1 Frame_Shift_Del p.M19Cfs*7 0.22 TCGA-EI-6507-01 6 74079494 74079494 C T OOEP Missense_Mutation p.A8T 0.19 tolerated(0.4) benign(0.011) TCGA-EI-6507-01 6 75890797 75890797 C T COL12A1 Silent p.E674E 0.28 TCGA-EI-6507-01 6 76022694 76022694 T C FILIP1 Missense_Mutation p.I952V 0.22 deleterious(0.04) probably_damaging(0.994) TCGA-EI-6507-01 6 76599898 76599898 G A MYO6 Missense_Mutation p.R928H 0.30 deleterious(0.05) unknown(0) TCGA-EI-6507-01 6 83892563 83892563 C T PGM3 Splice_Site p.X225_splice 0.25 TCGA-EI-6507-01 6 8417135 8417135 C T SLC35B3 Missense_Mutation p.A323T 0.18 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 6 87967280 87967280 G - ZNF292 Frame_Shift_Del p.G1313Vfs*12 0.14 TCGA-EI-6507-01 6 88385637 88385637 G A AKIRIN2 Missense_Mutation p.A181V 0.25 deleterious(0.01) possibly_damaging(0.655) TCGA-EI-6507-01 6 90097037 90097037 G A RRAGD Silent p.L141L 0.18 TCGA-EI-6507-01 6 90461213 90461213 G A MDN1 Missense_Mutation p.T1055M 0.27 benign(0.042) TCGA-EI-6507-01 6 90604469 90604469 C T GJA10 Silent p.G94G 0.24 TCGA-EI-6507-01 6 96053716 96053716 C A MANEA Missense_Mutation p.P275H 0.30 deleterious(0) possibly_damaging(0.902) TCGA-EI-6507-01 6 97001417 97001417 C T UFL1 3'UTR 0.20 TCGA-EI-6507-01 6 97562260 97562260 G A KLHL32 Missense_Mutation p.R410H 0.24 tolerated(0.06) possibly_damaging(0.888) TCGA-EI-6507-01 7 100084616 100084616 C T NYAP1 Missense_Mutation p.R81C 0.32 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 7 100212789 100212789 G A MOSPD3 Missense_Mutation p.V231M 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 7 100370981 100370981 C T ZAN Silent p.N1833N 0.33 TCGA-EI-6507-01 7 100679543 100679543 G A MUC17 Missense_Mutation p.A1616T 0.07 unknown(0) TCGA-EI-6507-01 7 1024057 1024057 C T CYP2W1 Missense_Mutation p.R62C 0.21 deleterious(0.02) possibly_damaging(0.849) TCGA-EI-6507-01 7 102523814 102523814 G A FBXL13 Silent p.S442S 0.26 TCGA-EI-6507-01 7 103234167 103234167 C T RELN Missense_Mutation p.D1292N 0.20 deleterious(0.03) probably_damaging(0.936) TCGA-EI-6507-01 7 106508432 106508432 G A PIK3CG Silent p.P142P 0.29 TCGA-EI-6507-01 7 11030370 11030370 A - PHF14 Frame_Shift_Del p.M316Wfs*5 0.17 TCGA-EI-6507-01 7 11101436 11101436 C T PHF14 Nonsense_Mutation p.R834* 0.20 TCGA-EI-6507-01 7 1131796 1131796 C T GPER1 Silent p.S144S 0.18 TCGA-EI-6507-01 7 114270021 114270021 G A FOXP2 Silent p.Q211Q 0.15 TCGA-EI-6507-01 7 116960704 116960704 C T WNT2 Missense_Mutation p.C76Y 0.20 deleterious(0) probably_damaging(0.913) TCGA-EI-6507-01 7 117227809 117227809 C T CFTR Missense_Mutation p.A534V 0.17 deleterious(0) benign(0) TCGA-EI-6507-01 7 12258129 12258129 G T TMEM106B Missense_Mutation p.R88I 0.21 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 7 127222472 127222472 C A GCC1 Missense_Mutation p.A642S 0.26 tolerated(0.17) benign(0.146) TCGA-EI-6507-01 7 135412191 135412191 G A SLC13A4 Silent p.C18C 0.24 TCGA-EI-6507-01 7 140373401 140373401 G A ADCK2 Missense_Mutation p.G91S 0.21 tolerated(0.43) benign(0.008) TCGA-EI-6507-01 7 142566291 142566291 C T EPHB6 Missense_Mutation p.R694W 0.32 deleterious(0) probably_damaging(0.967) TCGA-EI-6507-01 7 142569516 142569516 G A TRPV6 Missense_Mutation p.R708C 0.25 tolerated_low_confidence(0.06) benign(0.003) TCGA-EI-6507-01 7 143018934 143018934 G A CLCN1 Missense_Mutation p.G230E 0.29 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 7 143883851 143883851 A G ARHGEF35 3'UTR 0.17 TCGA-EI-6507-01 7 144096942 144096942 A G NOBOX Silent p.N354N 0.24 TCGA-EI-6507-01 7 148287970 148287970 C T C7orf33 5'UTR 0.28 TCGA-EI-6507-01 7 148523604 148523604 C T EZH2 Silent p.T283T 0.32 TCGA-EI-6507-01 7 148801598 148801598 G A ZNF425 Silent p.N455N 0.32 TCGA-EI-6507-01 7 150748011 150748011 A G ASIC3 Missense_Mutation p.K327R 0.23 tolerated(0.17) benign(0.338) TCGA-EI-6507-01 7 151860261 151860261 T C KMT2C Silent p.G3467G 0.19 TCGA-EI-6507-01 7 152513582 152513582 C T ACTR3B Missense_Mutation p.A150V 0.24 tolerated(0.11) benign(0.305) TCGA-EI-6507-01 7 1539638 1539638 C T INTS1 Missense_Mutation p.R189Q 0.21 deleterious(0.01) possibly_damaging(0.892) TCGA-EI-6507-01 7 154237664 154237664 A G DPP6 Missense_Mutation p.N169D 0.29 tolerated(0.14) benign(0.011) TCGA-EI-6507-01 7 154585824 154585824 G A DPP6 Missense_Mutation p.S391N 0.19 tolerated(0.49) benign(0.032) TCGA-EI-6507-01 7 154746105 154746105 G A PAXIP1 Missense_Mutation p.A894V 0.23 tolerated(0.2) unknown(0) TCGA-EI-6507-01 7 16816718 16816718 G A TSPAN13 Missense_Mutation p.A95T 0.18 deleterious(0) probably_damaging(0.996) TCGA-EI-6507-01 7 21857876 21857876 T C DNAH11 Missense_Mutation p.V3544A 0.25 benign(0.009) TCGA-EI-6507-01 7 2623314 2623314 C T IQCE Missense_Mutation p.R249W 0.25 deleterious(0) probably_damaging(0.998) TCGA-EI-6507-01 7 27150132 27150132 C T HOXA3 Missense_Mutation p.G43D 0.30 tolerated(0.36) benign(0.354) TCGA-EI-6507-01 7 2834612 2834612 T C GNA12 Missense_Mutation p.R159G 0.20 tolerated(0.38) benign(0.003) TCGA-EI-6507-01 7 2968323 2968323 G - CARD11 Frame_Shift_Del p.R555Gfs*45 0.21 TCGA-EI-6507-01 7 30830903 30830903 G A FAM188B Silent p.S262S 0.23 TCGA-EI-6507-01 7 30898883 30898883 G A FAM188B Missense_Mutation p.G563D 0.22 deleterious(0) probably_damaging(0.93) TCGA-EI-6507-01 7 34118715 34118715 G A BMPER Missense_Mutation p.G442D 0.56 deleterious(0.01) possibly_damaging(0.447) TCGA-EI-6507-01 7 36489339 36489340 - T ANLN Frame_Shift_Ins p.C1050Lfs*8 0.22 TCGA-EI-6507-01 7 36910015 36910015 C T ELMO1 Missense_Mutation p.A630T 0.34 deleterious(0.02) benign(0.029) TCGA-EI-6507-01 7 37901718 37901718 T - NME8 Frame_Shift_Del p.I120Mfs*16 0.21 TCGA-EI-6507-01 7 37955923 37955923 G A SFRP4 Silent p.L73L 0.32 TCGA-EI-6507-01 7 43917500 43917500 G - URGCP Frame_Shift_Del p.P521Lfs*8 0.13 TCGA-EI-6507-01 7 44184795 44184795 G A GCK Silent p.G447G 0.27 TCGA-EI-6507-01 7 45108082 45108082 G T CCM2 Silent p.A192A 0.25 TCGA-EI-6507-01 7 45124334 45124334 G A NACAD Missense_Mutation p.T482I 0.27 deleterious(0.03) possibly_damaging(0.554) TCGA-EI-6507-01 7 45140958 45140958 G A TBRG4 Missense_Mutation p.R565W 0.29 deleterious(0.03) probably_damaging(0.954) TCGA-EI-6507-01 7 4794936 4794936 G A FOXK1 Silent p.R324R 0.15 TCGA-EI-6507-01 7 4798719 4798720 - C FOXK1 Frame_Shift_Ins p.R430Sfs*23 0.16 TCGA-EI-6507-01 7 4823955 4823955 C T AP5Z1 Missense_Mutation p.A248V 0.33 tolerated(0.25) benign(0.005) TCGA-EI-6507-01 7 4947020 4947020 G T MMD2 3'UTR 0.27 TCGA-EI-6507-01 7 50450341 50450341 C T IKZF1 Silent p.C175C 0.31 TCGA-EI-6507-01 7 51092918 51092918 G T COBL Missense_Mutation p.A1219E 0.22 deleterious(0.04) benign(0.411) TCGA-EI-6507-01 7 54636859 54636859 A G VSTM2A 3'UTR 0.26 TCGA-EI-6507-01 7 57528706 57528706 C T ZNF716 Missense_Mutation p.T180I 0.20 deleterious(0.03) possibly_damaging(0.831) TCGA-EI-6507-01 7 72419902 72419902 C T POM121 3'UTR 0.28 TCGA-EI-6507-01 7 76129798 76129798 A - DTX2 Frame_Shift_Del p.N399Tfs*6 0.10 TCGA-EI-6507-01 7 76629666 76629666 A - UPK3B Intron 0.15 TCGA-EI-6507-01 7 77402551 77402551 T C RSBN1L Silent p.H571H 0.24 TCGA-EI-6507-01 7 86493618 86493618 C T GRM3 Missense_Mutation p.P863S 0.30 tolerated(0.08) possibly_damaging(0.607) TCGA-EI-6507-01 7 88389227 88389227 G A ZNF804B 5'UTR 0.27 TCGA-EI-6507-01 7 894593 894593 C T SUN1 Missense_Mutation p.R434C 0.17 deleterious(0) possibly_damaging(0.725) TCGA-EI-6507-01 7 90895699 90895699 G A FZD1 Missense_Mutation p.G502S 0.33 deleterious(0.01) probably_damaging(0.987) TCGA-EI-6507-01 7 95838213 95838213 T G SLC25A13 Missense_Mutation p.Q135H 0.13 tolerated(0.05) benign(0.015) TCGA-EI-6507-01 7 97369329 97369329 T A TAC1 3'UTR 0.55 TCGA-EI-6507-01 7 98254334 98254334 C T NPTX2 Silent p.Y248Y 0.26 TCGA-EI-6507-01 7 99103706 99103706 C - ZKSCAN5 Frame_Shift_Del p.P15Qfs*13 0.25 TCGA-EI-6507-01 7 99226868 99226868 C T ZSCAN25 Missense_Mutation p.A287V 0.25 tolerated(0.16) benign(0.062) TCGA-EI-6507-01 8 101083744 101083744 T C RGS22 Silent p.Q149Q 0.27 TCGA-EI-6507-01 8 101642568 101642568 T A SNX31 Missense_Mutation p.K103I 0.24 deleterious(0.02) possibly_damaging(0.851) TCGA-EI-6507-01 8 102505016 102505019 AAGT - GRHL2 Splice_Site p.X7_splice 0.22 TCGA-EI-6507-01 8 105509439 105509440 - T LRP12 Frame_Shift_Ins p.N447Kfs*13 0.32 TCGA-EI-6507-01 8 105511547 105511548 - A LRP12 Frame_Shift_Ins p.S158Ffs*5 0.21 TCGA-EI-6507-01 8 10622964 10622964 C T PINX1 Missense_Mutation p.A312T 0.25 tolerated(0.58) benign(0.001) TCGA-EI-6507-01 8 107763202 107763202 C T OXR1 3'UTR 0.22 TCGA-EI-6507-01 8 110986388 110986388 C A KCNV1 Missense_Mutation p.R77L 0.40 tolerated(0.18) benign(0.001) TCGA-EI-6507-01 8 113277762 113277762 T A CSMD3 Missense_Mutation p.Y3189F 0.18 tolerated(1) benign(0.004) TCGA-EI-6507-01 8 116599330 116599330 C T TRPS1 Silent p.L866L 0.26 TCGA-EI-6507-01 8 121444364 121444364 C G MRPL13 Splice_Site p.X51_splice 0.17 TCGA-EI-6507-01 8 123964088 123964088 C T ZHX2 Missense_Mutation p.A113V 0.32 tolerated(0.23) benign(0.317) TCGA-EI-6507-01 8 126019685 126019685 G A SQLE Missense_Mutation p.V260M 0.17 deleterious(0) possibly_damaging(0.655) TCGA-EI-6507-01 8 133984918 133984918 G A TG Missense_Mutation p.R2044H 0.24 tolerated(0.12) benign(0.035) TCGA-EI-6507-01 8 142229024 142229024 C T SLC45A4 Missense_Mutation p.A188T 0.15 deleterious(0.04) benign(0.304) TCGA-EI-6507-01 8 142437905 142437905 G A PTP4A3 Missense_Mutation p.A129T 0.22 deleterious(0.02) possibly_damaging(0.826) TCGA-EI-6507-01 8 143746339 143746339 C T JRK RNA 0.30 TCGA-EI-6507-01 8 144941554 144941554 A G EPPK1 Silent p.D1956D 0.32 TCGA-EI-6507-01 8 145109542 145109542 G - OPLAH Frame_Shift_Del p.H870Tfs*28 0.23 TCGA-EI-6507-01 8 145139400 145139400 G A GPAA1 Missense_Mutation p.G300S 0.41 deleterious(0) probably_damaging(0.981) TCGA-EI-6507-01 8 145583598 145583598 T C SLC52A2 Missense_Mutation p.L149P 0.22 deleterious(0) probably_damaging(0.979) TCGA-EI-6507-01 8 145732004 145732004 G A GPT Missense_Mutation p.V418M 0.51 deleterious(0.04) benign(0.027) TCGA-EI-6507-01 8 146032652 146032652 C A ZNF517 Silent p.T117T 0.23 TCGA-EI-6507-01 8 1616576 1616576 C T DLGAP2 Missense_Mutation p.A551V 0.32 tolerated(0.24) probably_damaging(0.958) TCGA-EI-6507-01 8 17581321 17581322 - T MTUS1 Frame_Shift_Ins p.T770Nfs*11 0.20 TCGA-EI-6507-01 8 18393367 18393367 C T PSD3 Silent p.S1010S 0.27 TCGA-EI-6507-01 8 1842705 1842705 C T ARHGEF10 Silent p.S469S 0.24 TCGA-EI-6507-01 8 22472454 22472454 G A CCAR2 Missense_Mutation p.R382H 0.14 deleterious(0) probably_damaging(0.999) TCGA-EI-6507-01 8 24350675 24350675 T - ADAM7 Frame_Shift_Del p.L594Yfs*29 0.22 TCGA-EI-6507-01 8 25174578 25174580 GAA - DOCK5 In_Frame_Del p.K461del 0.18 TCGA-EI-6507-01 8 25190203 25190203 G A DOCK5 Missense_Mutation p.A696T 0.26 deleterious(0) probably_damaging(0.943) TCGA-EI-6507-01 8 26149253 26149253 C - PPP2R2A 5'Flank 0.24 TCGA-EI-6507-01 8 27737221 27737221 C T SCARA5 Missense_Mutation p.V406M 0.35 deleterious(0) probably_damaging(0.991) TCGA-EI-6507-01 8 28218518 28218518 C T ZNF395 Missense_Mutation p.A42T 0.44 tolerated(0.33) benign(0.014) TCGA-EI-6507-01 8 28927893 28927893 G A KIF13B 3'UTR 0.33 TCGA-EI-6507-01 8 29961948 29961948 G A LEPROTL1 Silent p.T75T 0.28 TCGA-EI-6507-01 8 3087702 3087702 C T CSMD1 Missense_Mutation p.R1402H 0.24 probably_damaging(0.988) TCGA-EI-6507-01 8 33356604 33356604 A - MAK16 3'UTR 0.16 TCGA-EI-6507-01 8 35579744 35579744 C T UNC5D Silent p.S378S 0.18 TCGA-EI-6507-01 8 36768480 36768480 G A KCNU1 Silent p.A788A 0.28 TCGA-EI-6507-01 8 38027332 38027332 T C LSM1 Silent p.L73L 0.30 TCGA-EI-6507-01 8 38099780 38099780 G A DDHD2 Missense_Mutation p.R242H 0.20 deleterious(0.01) benign(0.046) TCGA-EI-6507-01 8 38257891 38257891 C T LETM2 Silent p.G202G 0.13 TCGA-EI-6507-01 8 42611740 42611741 - A CHRNA6 Frame_Shift_Ins p.W201Lfs*5 0.23 TCGA-EI-6507-01 8 54163460 54163460 G A OPRK1 Silent p.D46D 0.33 TCGA-EI-6507-01 8 6372270 6372270 G C ANGPT2 Silent p.G320G 0.25 TCGA-EI-6507-01 8 67356834 67356834 A - ADHFE1 Frame_Shift_Del p.N70Tfs*9 0.20 TCGA-EI-6507-01 8 67929897 67929897 T G PPP1R42 Missense_Mutation p.K29T 0.23 tolerated(0.17) benign(0.053) TCGA-EI-6507-01 8 70533459 70533459 C T SULF1 Nonsense_Mutation p.Q523* 0.22 TCGA-EI-6507-01 8 73480416 73480416 C T KCNB2 Silent p.N149N 0.16 TCGA-EI-6507-01 8 77763302 77763302 A - ZFHX4 Frame_Shift_Del p.R1384Gfs*57 0.25 TCGA-EI-6507-01 8 81571827 81571827 C T ZNF704 Missense_Mutation p.G342D 0.15 deleterious(0.01) probably_damaging(1) TCGA-EI-6507-01 8 82606597 82606597 G A SLC10A5 Missense_Mutation p.A204V 0.23 tolerated(0.08) benign(0.156) TCGA-EI-6507-01 8 86057694 86057695 - A LRRCC1 Frame_Shift_Ins p.I1018Nfs*2 0.22 TCGA-EI-6507-01 8 95523326 95523326 G T KIAA1429 Intron 0.23 TCGA-EI-6507-01 8 9567544 9567544 A - TNKS Frame_Shift_Del p.N555Ifs*5 0.21 TCGA-EI-6507-01 9 100420956 100420956 C T NCBP1 Missense_Mutation p.P470S 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6507-01 9 100616593 100616593 G A FOXE1 Missense_Mutation p.A133T 0.12 deleterious(0) probably_damaging(0.932) TCGA-EI-6507-01 9 101216433 101216433 C T GABBR2 Missense_Mutation p.G356R 0.29 deleterious(0) probably_damaging(0.989) TCGA-EI-6507-01 9 101470737 101470737 G A GABBR2 Missense_Mutation p.R95C 0.36 deleterious(0.03) possibly_damaging(0.571) TCGA-EI-6507-01 9 109688688 109688688 A - ZNF462 Frame_Shift_Del p.N833Tfs*81 0.21 TCGA-EI-6507-01 9 114289709 114289709 G A ZNF483 Missense_Mutation p.A12T 0.10 tolerated(0.33) possibly_damaging(0.483) TCGA-EI-6507-01 9 114305009 114305009 G T ZNF483 Missense_Mutation p.Q598H 0.29 tolerated(0.25) benign(0.219) TCGA-EI-6507-01 9 114820789 114820789 G A SUSD1 Silent p.Y676Y 0.27 TCGA-EI-6507-01 9 117020870 117020870 G A COL27A1 Missense_Mutation p.R1064H 0.32 unknown(0) TCGA-EI-6507-01 9 117092189 117092189 C T ORM2 Missense_Mutation p.A2V 0.16 tolerated(0.18) unknown(0) TCGA-EI-6507-01 9 117099535 117099535 C T AKNA Silent p.P1373P 0.12 TCGA-EI-6507-01 9 117360045 117360045 T G ATP6V1G1 3'UTR 0.25 TCGA-EI-6507-01 9 119188123 119188123 C A ASTN2 3'UTR 0.18 TCGA-EI-6507-01 9 121930148 121930148 G A BRINP1 Silent p.Y500Y 0.14 TCGA-EI-6507-01 9 124545902 124545902 G A DAB2IP 3'UTR 0.15 TCGA-EI-6507-01 9 129870930 129870930 A - ANGPTL2 Frame_Shift_Del p.F27Lfs*15 0.18 TCGA-EI-6507-01 9 130165010 130165011 - C SLC2A8 Frame_Shift_Ins p.I237Hfs*4 0.24 TCGA-EI-6507-01 9 131554840 131554840 G A TBC1D13 Missense_Mutation p.D124N 0.24 tolerated(0.05) probably_damaging(0.971) TCGA-EI-6507-01 9 131832593 131832593 C T FAM73B Missense_Mutation p.A548V 0.36 tolerated(0.09) benign(0.183) TCGA-EI-6507-01 9 135501082 135501082 T C DDX31 Missense_Mutation p.D666G 0.31 tolerated(0.16) benign(0.039) TCGA-EI-6507-01 9 139917204 139917204 G A ABCA2 Missense_Mutation p.A130V 0.29 tolerated(0.11) possibly_damaging(0.465) TCGA-EI-6507-01 9 140127250 140127250 G T SLC34A3 Missense_Mutation p.D107Y 0.24 deleterious(0) possibly_damaging(0.776) TCGA-EI-6507-01 9 140137888 140137888 G T TUBB4B Missense_Mutation p.M406I 0.25 deleterious_low_confidence(0.02) benign(0.053) TCGA-EI-6507-01 9 140611267 140611267 C T EHMT1 Missense_Mutation p.A92V 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.592) TCGA-EI-6507-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.19 TCGA-EI-6507-01 9 27011964 27011964 G A IFT74 Missense_Mutation p.A263T 0.21 tolerated(0.56) benign(0.002) TCGA-EI-6507-01 9 27556578 27556578 C T C9orf72 Missense_Mutation p.E358K 0.17 tolerated(0.07) benign(0.4) TCGA-EI-6507-01 9 32543427 32543427 C A TOPORS Missense_Mutation p.A366S 0.24 tolerated(0.21) benign(0.269) TCGA-EI-6507-01 9 33442014 33442014 C T AQP3 3'UTR 0.29 TCGA-EI-6507-01 9 33463383 33463383 G A NOL6 Silent p.R1017R 0.25 TCGA-EI-6507-01 9 34400957 34400957 G A FAM219A 3'UTR 0.27 TCGA-EI-6507-01 9 34976594 34976594 C T KIAA1045 Missense_Mutation p.R236C 0.24 tolerated(0.08) benign(0.188) TCGA-EI-6507-01 9 35091693 35091693 G - PIGO Frame_Shift_Del p.R731Vfs*17 0.42 TCGA-EI-6507-01 9 35547974 35547974 C - RUSC2 Frame_Shift_Del p.N488Tfs*31 0.24 TCGA-EI-6507-01 9 36169700 36169700 G T CCIN Missense_Mutation p.E67D 0.20 tolerated(0.06) possibly_damaging(0.857) TCGA-EI-6507-01 9 37442272 37442272 C - ZBTB5 Frame_Shift_Del p.E93Rfs*4 0.15 TCGA-EI-6507-01 9 69200402 69200402 G A FOXD4L6 Missense_Mutation p.A404V 0.36 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-EI-6507-01 9 732694 732694 G A KANK1 Intron 0.33 TCGA-EI-6507-01 9 740854 740854 G A KANK1 Missense_Mutation p.A1206T 0.18 deleterious(0) probably_damaging(0.909) TCGA-EI-6507-01 9 77631201 77631202 - T C9orf41 Frame_Shift_Ins p.N191Kfs*11 0.21 TCGA-EI-6507-01 9 79931126 79931128 TTA - VPS13A In_Frame_Del p.I1558del 0.28 TCGA-EI-6507-01 9 94794788 94794788 C T SPTLC1 Missense_Mutation p.A461T 0.24 tolerated(0.3) benign(0.025) TCGA-EI-6507-01 9 95055943 95055943 G A IARS 5'UTR 0.40 TCGA-EI-6507-01 9 96436063 96436063 G A PHF2 Missense_Mutation p.A849T 0.26 tolerated(0.43) unknown(0) TCGA-EI-6507-01 9 96436080 96436080 C T PHF2 Silent p.V854V 0.27 TCGA-EI-6507-01 9 98211415 98211415 G A PTCH1 Missense_Mutation p.A1247V 0.29 tolerated_low_confidence(0.5) benign(0.017) TCGA-EI-6507-01 9 98231216 98231216 G T PTCH1 Silent p.P689P 0.27 TCGA-EI-6507-01 X 100656741 100656741 G A GLA Silent p.C142C 0.56 TCGA-EI-6507-01 X 105855767 105855767 G A CXorf57 Missense_Mutation p.V153I 0.09 tolerated(0.1) benign(0.019) TCGA-EI-6507-01 X 113997748 113997748 C T HTR2C Intron 0.09 TCGA-EI-6507-01 X 114425355 114425355 G A RBMXL3 Missense_Mutation p.A451T 0.49 tolerated_low_confidence(0.07) benign(0.001) TCGA-EI-6507-01 X 123870951 123870951 G - TENM1 Frame_Shift_Del p.P211Lfs*11 0.37 TCGA-EI-6507-01 X 129190011 129190011 C - BCORL1 Frame_Shift_Del p.P1681Qfs*20 0.42 TCGA-EI-6507-01 X 130192407 130192407 G A ARHGAP36 5'UTR 0.36 TCGA-EI-6507-01 X 144904118 144904118 C - SLITRK2 Frame_Shift_Del p.Q61Sfs*14 0.30 TCGA-EI-6507-01 X 152686195 152686195 G T ZFP92 Missense_Mutation p.Q120H 0.51 tolerated(0.11) benign(0.002) TCGA-EI-6507-01 X 17705863 17705863 C A NHS Silent p.P189P 0.55 TCGA-EI-6507-01 X 18911701 18911701 C T PHKA2 Missense_Mutation p.A1204T 0.51 deleterious(0) possibly_damaging(0.509) TCGA-EI-6507-01 X 21875100 21875100 G A YY2 Silent p.T166T 0.39 TCGA-EI-6507-01 X 30237068 30237068 A G MAGEB2 Missense_Mutation p.Y124C 0.47 tolerated(0.13) benign(0.02) TCGA-EI-6507-01 X 30237947 30237948 - T MAGEB2 3'UTR 0.30 TCGA-EI-6507-01 X 30261250 30261250 C T MAGEB4 Missense_Mutation p.A333V 0.51 tolerated(0.24) unknown(0) TCGA-EI-6507-01 X 35820392 35820392 G A MAGEB16 Missense_Mutation p.V27I 0.38 tolerated(0.32) benign(0.07) TCGA-EI-6507-01 X 47006882 47006882 T C RBM10 Translation_Start_Site p.M1? 0.48 deleterious(0) unknown(0) TCGA-EI-6507-01 X 47058303 47058303 C A UBA1 Silent p.P34P 0.65 TCGA-EI-6507-01 X 48676708 48676708 C A HDAC6 Silent p.G692G 0.54 TCGA-EI-6507-01 X 49114835 49114835 C - FOXP3 Frame_Shift_Del p.G43Efs*19 0.16 TCGA-EI-6507-01 X 49142836 49142836 C T PPP1R3F Missense_Mutation p.R562C 0.56 tolerated_low_confidence(0.14) benign(0.002) TCGA-EI-6507-01 X 49646964 49646964 A G USP27X 3'UTR 0.39 TCGA-EI-6507-01 X 55029489 55029489 C T APEX2 Missense_Mutation p.R173C 0.38 deleterious(0) benign(0.094) TCGA-EI-6507-01 X 55057400 55057400 G C ALAS2 5'UTR 0.51 TCGA-EI-6507-01 X 64744047 64744047 C T LAS1L Missense_Mutation p.A397T 0.48 tolerated(0.41) benign(0.017) TCGA-EI-6507-01 X 66765032 66765032 C T AR Missense_Mutation p.P15L 0.18 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-EI-6507-01 X 70327614 70327614 G - IL2RG Frame_Shift_Del p.P361Hfs*5 0.41 TCGA-EI-6507-01 X 71358928 71358928 G T NHSL2 Silent p.V510V 0.52 TCGA-EI-6507-01 X 71427620 71427620 C T ERCC6L Missense_Mutation p.V333I 0.53 tolerated(0.66) benign(0.08) TCGA-EI-6507-01 X 74520809 74520809 A G UPRT Intron 0.10 TCGA-EI-6507-01 X 86877231 86877231 A - KLHL4 Frame_Shift_Del p.N317Tfs*33 0.34 TCGA-EI-6507-01 X 9862566 9862566 C T SHROOM2 Silent p.R206R 0.07 TCGA-EI-6507-01 X 99662505 99662505 G - PCDH19 Frame_Shift_Del p.P364Rfs*4 0.52 TCGA-EI-6508-01 10 124340379 124340379 C A DMBT1 Intron 0.37 TCGA-EI-6508-01 10 124402685 124402685 G A DMBT1 Missense_Mutation p.R2338H 0.29 tolerated(0.51) possibly_damaging(0.886) TCGA-EI-6508-01 10 125650878 125650878 G A CPXM2 Missense_Mutation p.P100S 0.45 tolerated_low_confidence(0.1) benign(0.001) TCGA-EI-6508-01 10 1262964 1262964 C T ADARB2 Missense_Mutation p.A537T 0.47 tolerated(0.85) benign(0.025) TCGA-EI-6508-01 10 12940439 12940439 G T CCDC3 Missense_Mutation p.R264S 0.50 tolerated_low_confidence(0.43) benign(0.066) TCGA-EI-6508-01 10 129905236 129905236 T C MKI67 Missense_Mutation p.D1623G 0.18 deleterious(0) benign(0.079) TCGA-EI-6508-01 10 27497281 27497281 C T ACBD5 Missense_Mutation p.R433Q 0.45 tolerated(0.21) benign(0.006) TCGA-EI-6508-01 10 49939427 49939427 C T WDFY4 Nonsense_Mutation p.R468* 0.35 TCGA-EI-6508-01 10 61832653 61832653 G A ANK3 Silent p.A2662A 0.37 TCGA-EI-6508-01 10 64573897 64573897 C T EGR2 Silent p.P167P 0.33 TCGA-EI-6508-01 11 118770651 118770652 - G BCL9L Frame_Shift_Ins p.P1128Tfs*42 0.57 TCGA-EI-6508-01 11 18267550 18267550 T G SAA2 Missense_Mutation p.N46T 0.25 deleterious(0.03) possibly_damaging(0.653) TCGA-EI-6508-01 11 18305412 18305412 C T HPS5 Silent p.L996L 0.38 TCGA-EI-6508-01 11 379669 379669 G A B4GALNT4 Missense_Mutation p.R819H 0.29 deleterious(0.02) unknown(0) TCGA-EI-6508-01 11 50003744 50003744 T A OR4C12 Missense_Mutation p.Q98H 0.43 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EI-6508-01 11 55038547 55038547 A T TRIM48 3'UTR 0.39 TCGA-EI-6508-01 11 56114150 56114150 T A OR8K1 Missense_Mutation p.N212K 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-EI-6508-01 12 102572530 102572530 C T PARPBP Missense_Mutation p.S389F 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-EI-6508-01 12 123344995 123344995 A T HIP1R Missense_Mutation p.Y862F 0.31 deleterious(0) probably_damaging(0.992) TCGA-EI-6508-01 12 123344996 123344996 C G HIP1R Nonsense_Mutation p.Y862* 0.31 TCGA-EI-6508-01 12 123344997 123344997 G T HIP1R Missense_Mutation p.A863S 0.31 deleterious(0.01) possibly_damaging(0.899) TCGA-EI-6508-01 12 124418002 124418002 T C DNAH10 Missense_Mutation p.F4356S 0.10 benign(0.068) TCGA-EI-6508-01 12 23887680 23887680 T C SOX5 Missense_Mutation p.R250G 0.10 deleterious(0) probably_damaging(0.989) TCGA-EI-6508-01 12 4643454 4643454 G C C12orf4 Missense_Mutation p.L65V 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6508-01 12 4921174 4921174 G A KCNA6 3'UTR 0.40 TCGA-EI-6508-01 12 6749646 6749646 G A ACRBP Missense_Mutation p.L374F 0.47 tolerated(0.71) possibly_damaging(0.524) TCGA-EI-6508-01 12 97078513 97078513 G C C12orf55 Missense_Mutation p.R1935T 0.37 deleterious(0) benign(0.001) TCGA-EI-6508-01 13 23908582 23908582 C A SACS Nonsense_Mutation p.E3145* 0.31 TCGA-EI-6508-01 13 23908606 23908606 C T SACS Missense_Mutation p.D3137N 0.24 probably_damaging(0.992) TCGA-EI-6508-01 13 23908918 23908918 C A SACS Missense_Mutation p.D3033Y 0.29 probably_damaging(0.998) TCGA-EI-6508-01 13 23908973 23908973 C T SACS Nonsense_Mutation p.W3014* 0.24 TCGA-EI-6508-01 14 103807329 103807329 G A EIF5 Silent p.P412P 0.77 TCGA-EI-6508-01 14 93678456 93678456 C G RP11-371E8.4 Missense_Mutation p.P161A 0.81 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-EI-6508-01 14 94519387 94519387 T C DDX24 Silent p.A755A 0.08 TCGA-EI-6508-01 15 20663134 20663134 C T HERC2P3 RNA 0.20 TCGA-EI-6508-01 15 41813106 41813106 G A RPAP1 Missense_Mutation p.T1093M 0.47 deleterious(0.01) benign(0.179) TCGA-EI-6508-01 15 42132408 42132408 G A PLA2G4B Missense_Mutation p.R252H 0.42 deleterious(0.05) benign(0.254) TCGA-EI-6508-01 15 49048279 49048279 C T CEP152 Missense_Mutation p.D1056N 0.32 deleterious(0) possibly_damaging(0.56) TCGA-EI-6508-01 15 52497322 52497322 C G MYO5C Missense_Mutation p.E1520D 0.40 tolerated(0.07) probably_damaging(0.997) TCGA-EI-6508-01 15 58285001 58285001 C T ALDH1A2 Missense_Mutation p.G234R 0.55 deleterious(0) probably_damaging(1) TCGA-EI-6508-01 15 62944241 62944241 A T TLN2 Missense_Mutation p.K91I 0.39 deleterious(0) possibly_damaging(0.836) TCGA-EI-6508-01 15 75660477 75660477 G A MAN2C1 Missense_Mutation p.P55L 0.21 deleterious(0) benign(0.255) TCGA-EI-6508-01 15 83331452 83331452 C T AP3B2 Missense_Mutation p.E924K 0.37 tolerated(0.51) benign(0.305) TCGA-EI-6508-01 16 22151533 22151533 G A VWA3A Missense_Mutation p.R784H 0.28 tolerated(0.25) benign(0.009) TCGA-EI-6508-01 16 46755054 46755054 C T MYLK3 Missense_Mutation p.D656N 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6508-01 16 89920751 89920751 G T SPIRE2 Missense_Mutation p.D235Y 0.37 deleterious(0) probably_damaging(0.979) TCGA-EI-6508-01 17 26897872 26897872 T C PIGS Missense_Mutation p.K95R 0.38 tolerated(0.11) possibly_damaging(0.568) TCGA-EI-6508-01 17 33454242 33454242 G A FNDC8 Missense_Mutation p.E131K 0.33 tolerated_low_confidence(0.09) benign(0.152) TCGA-EI-6508-01 17 42255595 42255595 C T ASB16 Missense_Mutation p.S400L 0.36 tolerated(0.13) possibly_damaging(0.74) TCGA-EI-6508-01 17 66040613 66040613 C T KPNA2 Silent p.I447I 0.12 TCGA-EI-6508-01 17 70120177 70120178 - C SOX9 Frame_Shift_Ins p.R394Pfs*184 0.61 TCGA-EI-6508-01 17 7399374 7399374 C T POLR2A Missense_Mutation p.R70C 0.74 benign(0.381) TCGA-EI-6508-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.82 TCGA-EI-6508-01 17 78360567 78360567 T - RNF213 Frame_Shift_Del p.L4934Sfs*38 0.49 TCGA-EI-6508-01 17 79846185 79846185 C T ALYREF Missense_Mutation p.G238S 0.77 tolerated(0.12) possibly_damaging(0.718) TCGA-EI-6508-01 18 3879898 3879898 G A DLGAP1 Silent p.C57C 0.25 TCGA-EI-6508-01 18 48604662 48604662 T G SMAD4 Missense_Mutation p.L495R 0.65 deleterious(0) probably_damaging(0.999) TCGA-EI-6508-01 18 8825456 8825456 G A SOGA2 Silent p.T1316T 0.40 TCGA-EI-6508-01 19 16222682 16222682 C T RAB8A 5'UTR 0.22 TCGA-EI-6508-01 19 19371743 19371743 G A HAPLN4 Silent p.D121D 0.37 TCGA-EI-6508-01 19 20228743 20228743 A G ZNF90 Missense_Mutation p.K127R 0.46 tolerated(0.08) benign(0.328) TCGA-EI-6508-01 19 39111066 39111074 TCCTGAAGC - EIF3K In_Frame_Del p.L51_L53del 0.34 TCGA-EI-6508-01 19 4531793 4531793 G A PLIN5 Silent p.A34A 0.57 TCGA-EI-6508-01 19 53886506 53886506 G A ZNF525 3'UTR 0.56 TCGA-EI-6508-01 19 59069682 59069682 T C UBE2M Missense_Mutation p.S23G 0.09 tolerated(0.38) benign(0) TCGA-EI-6508-01 19 7706939 7706939 C A STXBP2 Missense_Mutation p.Q200K 0.33 tolerated(0.73) benign(0.026) TCGA-EI-6508-01 19 9076366 9076366 T G MUC16 Missense_Mutation p.S3694R 0.36 unknown(0) TCGA-EI-6508-01 1 100964777 100964777 C A CDC14A Missense_Mutation p.L572I 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-EI-6508-01 1 152276711 152276711 C T FLG Missense_Mutation p.D3551N 0.23 unknown(0) TCGA-EI-6508-01 1 152285387 152285387 G T FLG Missense_Mutation p.H659N 0.36 benign(0.082) TCGA-EI-6508-01 1 170993567 170993567 G A MROH9 Missense_Mutation p.R647Q 0.45 tolerated(0.26) benign(0.035) TCGA-EI-6508-01 1 210948826 210948826 G T KCNH1 Missense_Mutation p.A659D 0.37 deleterious(0) probably_damaging(0.994) TCGA-EI-6508-01 1 233507792 233507792 C G MLK4 Missense_Mutation p.H521D 0.36 deleterious(0) probably_damaging(0.999) TCGA-EI-6508-01 1 45812692 45812692 C T TESK2 Missense_Mutation p.A251T 0.39 deleterious(0) probably_damaging(0.969) TCGA-EI-6508-01 1 53727865 53727865 G A LRP8 Missense_Mutation p.R597C 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6508-01 20 16348113 16348113 C T KIF16B Missense_Mutation p.R1286H 0.27 tolerated_low_confidence(0.15) benign(0) TCGA-EI-6508-01 20 18576856 18576856 G A DTD1 Missense_Mutation p.R114H 0.23 deleterious(0.01) possibly_damaging(0.742) TCGA-EI-6508-01 20 3944554 3944554 G C RNF24 Missense_Mutation p.I58M 0.27 tolerated(0.33) probably_damaging(0.991) TCGA-EI-6508-01 21 15889220 15889220 T C SAMSN1 Missense_Mutation p.E159G 0.32 deleterious(0) probably_damaging(0.986) TCGA-EI-6508-01 21 33887402 33887402 G A EVA1C Missense_Mutation p.A410T 0.72 deleterious(0) probably_damaging(0.999) TCGA-EI-6508-01 22 16287532 16287532 G T POTEH Silent p.G118G 0.33 TCGA-EI-6508-01 22 18028280 18028280 G A CECR2 Silent p.P1080P 0.66 TCGA-EI-6508-01 22 39096173 39096173 C G JOSD1 5'UTR 0.33 TCGA-EI-6508-01 22 41970768 41970768 G A CSDC2 Missense_Mutation p.D111N 0.42 deleterious(0) possibly_damaging(0.471) TCGA-EI-6508-01 2 114258657 114258657 T C FOXD4L1 3'UTR 0.25 TCGA-EI-6508-01 2 138738821 138738821 C T HNMT Intron 0.38 TCGA-EI-6508-01 2 179476363 179476363 C A TTN Missense_Mutation p.G16865W 0.42 TCGA-EI-6508-01 2 189868844 189868844 G T COL3A1 Missense_Mutation p.G933V 0.39 probably_damaging(0.999) TCGA-EI-6508-01 2 218713689 218713689 G A TNS1 Silent p.T392T 0.37 TCGA-EI-6508-01 2 233785272 233785295 CTCGGTATTCCTGATACAGGAGCC - NGEF In_Frame_Del p.G176_R183del 0.31 TCGA-EI-6508-01 2 5838471 5838471 A C SOX11 3'UTR 0.34 TCGA-EI-6508-01 3 121980561 121980561 C T CASR Nonsense_Mutation p.R227* 0.41 TCGA-EI-6508-01 3 129290685 129290685 C T PLXND1 Missense_Mutation p.R1027H 0.35 tolerated(0.15) probably_damaging(0.953) TCGA-EI-6508-01 3 143271247 143271247 G T SLC9A9 Missense_Mutation p.T349N 0.39 deleterious(0) possibly_damaging(0.705) TCGA-EI-6508-01 3 39227196 39227196 C T XIRP1 Silent p.P1247P 0.45 TCGA-EI-6508-01 3 50197135 50197135 C A SEMA3F Missense_Mutation p.P27Q 0.62 tolerated(0.83) benign(0.001) TCGA-EI-6508-01 3 88205255 88205255 A C C3orf38 Missense_Mutation p.N154H 0.14 deleterious(0) probably_damaging(0.988) TCGA-EI-6508-01 3 9871013 9871013 C T TTLL3 Silent p.R639R 0.42 TCGA-EI-6508-01 4 128626827 128626827 T G INTU Missense_Mutation p.L550V 0.34 tolerated(0.06) probably_damaging(0.982) TCGA-EI-6508-01 4 15517531 15517531 G A CC2D2A Silent p.R307R 0.38 TCGA-EI-6508-01 4 174169255 174169255 C G GALNT7 Missense_Mutation p.S84C 0.42 deleterious(0) possibly_damaging(0.868) TCGA-EI-6508-01 4 40245229 40245229 C A RHOH Missense_Mutation p.Q75K 0.34 tolerated(0.06) benign(0.138) TCGA-EI-6508-01 4 44700749 44700749 A G GUF1 3'UTR 0.39 TCGA-EI-6508-01 4 68928547 68928547 G A TMPRSS11F Intron 0.36 TCGA-EI-6508-01 4 70455177 70455177 C A UGT2A1 Silent p.V665V 0.31 TCGA-EI-6508-01 4 75937816 75937816 T G PARM1 Silent p.S75S 0.44 TCGA-EI-6508-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.27 TCGA-EI-6508-01 5 112175216 112175216 G T APC Nonsense_Mutation p.E1309* 0.35 TCGA-EI-6508-01 5 120022314 120022314 C T PRR16 Silent p.F252F 0.38 TCGA-EI-6508-01 5 129521023 129521023 C A CHSY3 Silent p.R730R 0.71 TCGA-EI-6508-01 5 13717480 13717480 A T DNAH5 Missense_Mutation p.F4217I 0.27 possibly_damaging(0.637) TCGA-EI-6508-01 5 140348597 140348597 G T PCDHAC2 Missense_Mutation p.R749M 0.67 tolerated(0.06) probably_damaging(0.948) TCGA-EI-6508-01 5 140683389 140683389 G A SLC25A2 Missense_Mutation p.A15V 0.67 deleterious(0) probably_damaging(0.937) TCGA-EI-6508-01 5 140774346 140774346 G A PCDHGA8 Missense_Mutation p.A656T 0.62 deleterious_low_confidence(0.03) possibly_damaging(0.71) TCGA-EI-6508-01 5 70247783 70247783 C A SMN1 Missense_Mutation p.Q284K 0.36 tolerated(0.32) benign(0) TCGA-EI-6508-01 5 72178940 72178940 G A TNPO1 Missense_Mutation p.R344Q 0.39 deleterious(0.01) benign(0.04) TCGA-EI-6508-01 5 81613867 81613867 C T ATP6AP1L Silent p.C141C 0.44 TCGA-EI-6508-01 6 121491583 121491583 T C TBC1D32 Intron 0.14 TCGA-EI-6508-01 6 31860203 31860203 C T EHMT2 Missense_Mutation p.R282H 0.32 tolerated_low_confidence(0.29) benign(0.003) TCGA-EI-6508-01 6 79650763 79650763 A C PHIP Missense_Mutation p.L1705V 0.45 tolerated_low_confidence(0.47) benign(0.001) TCGA-EI-6508-01 6 90428553 90428553 T C MDN1 Missense_Mutation p.H2085R 0.13 benign(0.049) TCGA-EI-6508-01 7 106844055 106844055 A C COG5 Missense_Mutation p.V830G 0.34 deleterious(0) possibly_damaging(0.904) TCGA-EI-6508-01 7 1095008 1095008 A G GPR146 5'UTR 0.09 TCGA-EI-6508-01 7 139717476 139717476 C T TBXAS1 Missense_Mutation p.T504M 0.36 deleterious(0) probably_damaging(0.95) TCGA-EI-6508-01 7 30062407 30062407 T A FKBP14 Missense_Mutation p.I75F 0.35 tolerated(0.72) benign(0.15) TCGA-EI-6508-01 7 4089010 4089010 C T SDK1 Missense_Mutation p.T878M 0.46 deleterious(0.01) benign(0.104) TCGA-EI-6508-01 7 99566005 99566005 C T AZGP1 Missense_Mutation p.R129K 0.42 tolerated(0.48) benign(0.224) TCGA-EI-6508-01 8 13357122 13357122 G T DLC1 Silent p.I153I 0.28 TCGA-EI-6508-01 8 139165293 139165293 T G FAM135B Missense_Mutation p.E475D 0.37 tolerated(0.15) benign(0.004) TCGA-EI-6508-01 8 77767926 77767926 T C ZFHX4 Silent p.S2923S 0.39 TCGA-EI-6508-01 8 87076416 87076416 G A PSKH2 Silent p.S210S 0.35 TCGA-EI-6508-01 9 136131338 136131338 C T RP11-430N14.4 5'Flank 0.80 TCGA-EI-6508-01 9 19786872 19786872 C A SLC24A2 5'UTR 0.45 TCGA-EI-6508-01 9 72833433 72833433 T A MAMDC2 Missense_Mutation p.L611H 0.48 deleterious(0) probably_damaging(1) TCGA-EI-6508-01 9 90500813 90500813 C T SPATA31E1 Silent p.L471L 0.30 TCGA-EI-6508-01 9 96259756 96259756 C T FAM120A Missense_Mutation p.R270W 0.40 deleterious(0) probably_damaging(0.999) TCGA-EI-6508-01 X 10417466 10417466 G A MID1 Missense_Mutation p.T649M 0.28 tolerated(0.56) benign(0.21) TCGA-EI-6508-01 X 125955246 125955246 G T CXorf64 Missense_Mutation p.A209S 0.43 deleterious(0.02) probably_damaging(0.931) TCGA-EI-6508-01 X 135427393 135427393 C T GPR112 Missense_Mutation p.P510S 0.34 tolerated(0.15) benign(0.006) TCGA-EI-6508-01 X 140994435 140994435 C A MAGEC1 Silent p.S415S 0.14 TCGA-EI-6508-01 X 141290856 141290856 A T MAGEC2 Missense_Mutation p.H306Q 0.34 deleterious(0) probably_damaging(0.978) TCGA-EI-6508-01 X 153608713 153608713 G A EMD Missense_Mutation p.A129T 0.40 tolerated(1) benign(0) TCGA-EI-6508-01 X 154114437 154114437 G A F8 Intron 0.18 TCGA-EI-6508-01 X 3227826 3227826 G T MXRA5 Silent p.G2806G 0.34 TCGA-EI-6508-01 X 35971785 35971785 G A CXorf22 Missense_Mutation p.V375I 0.34 tolerated(0.11) benign(0.177) TCGA-EI-6508-01 X 54959707 54959707 C T PFKFB1 3'UTR 0.44 TCGA-EI-6508-01 X 75649145 75649145 C T MAGEE1 Silent p.P274P 0.46 TCGA-EI-6509-01 10 4872999 4872999 G A AKR1E2 Missense_Mutation p.A58T 0.42 tolerated(0.3) benign(0.037) TCGA-EI-6509-01 10 71835503 71835503 G A H2AFY2 Missense_Mutation p.R30H 0.42 deleterious(0) probably_damaging(0.998) TCGA-EI-6509-01 10 75394302 75394302 C T MYOZ1 Missense_Mutation p.A148T 0.32 tolerated(0.18) benign(0.016) TCGA-EI-6509-01 11 1953741 1953741 C T TNNT3 Silent p.F56F 0.59 TCGA-EI-6509-01 11 66618340 66618340 G A PC Missense_Mutation p.R760W 0.78 deleterious(0) probably_damaging(0.999) TCGA-EI-6509-01 12 113445631 113445631 G A OAS2 Missense_Mutation p.R593Q 0.43 tolerated(0.14) possibly_damaging(0.527) TCGA-EI-6509-01 12 32446987 32446987 G A BICD1 Silent p.K162K 0.41 TCGA-EI-6509-01 12 50368216 50368216 C A AQP6 Missense_Mutation p.S171Y 0.31 deleterious(0) probably_damaging(0.945) TCGA-EI-6509-01 12 9346675 9346675 G A PZP Missense_Mutation p.R418W 0.42 deleterious(0.02) benign(0.109) TCGA-EI-6509-01 13 103395810 103395810 T A LINC00283 RNA 0.05 TCGA-EI-6509-01 14 44975770 44975770 T G FSCB Missense_Mutation p.T141P 0.42 deleterious(0.02) probably_damaging(0.928) TCGA-EI-6509-01 14 74162608 74162608 C A DNAL1 Missense_Mutation p.T179N 0.33 tolerated(0.48) benign(0.003) TCGA-EI-6509-01 15 33895522 33895522 C T RYR3 Silent p.D707D 0.37 TCGA-EI-6509-01 15 72767252 72767252 C T ARIH1 Missense_Mutation p.P91L 0.38 tolerated(0.16) benign(0) TCGA-EI-6509-01 16 1263820 1263820 G A CACNA1H Silent p.T1606T 0.38 TCGA-EI-6509-01 17 40718036 40718036 G A COASY 3'UTR 0.67 TCGA-EI-6509-01 17 45663749 45663749 G A NPEPPS Missense_Mutation p.G322D 0.70 deleterious(0) probably_damaging(0.967) TCGA-EI-6509-01 17 72937877 72937877 C T OTOP3 Missense_Mutation p.P155S 0.38 tolerated(1) benign(0.345) TCGA-EI-6509-01 17 74077480 74077480 G A ZACN Silent p.V222V 0.48 TCGA-EI-6509-01 17 74722530 74722530 G C JMJD6 Missense_Mutation p.R10G 0.44 deleterious(0.03) benign(0.008) TCGA-EI-6509-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.68 deleterious(0) probably_damaging(0.997) TCGA-EI-6509-01 18 54605904 54605904 T C WDR7 Silent p.L1324L 0.08 TCGA-EI-6509-01 19 18100628 18100628 G A KCNN1 Missense_Mutation p.R425H 0.24 deleterious(0) probably_damaging(0.987) TCGA-EI-6509-01 19 20727260 20727260 T C ZNF737 3'UTR 0.29 TCGA-EI-6509-01 19 43262388 43262388 T G PSG8 Silent p.R159R 0.36 TCGA-EI-6509-01 19 49079080 49079080 A G SULT2B1 Intron 0.19 TCGA-EI-6509-01 19 49364722 49364722 A G PLEKHA4 Missense_Mutation p.L101P 0.11 deleterious(0) probably_damaging(1) TCGA-EI-6509-01 19 51875038 51875038 G A NKG7 Missense_Mutation p.T164I 0.41 deleterious(0.01) benign(0.278) TCGA-EI-6509-01 1 152190995 152190995 C T HRNR Missense_Mutation p.R1037H 0.48 unknown(0) TCGA-EI-6509-01 1 156645081 156645081 C T NES Missense_Mutation p.A279T 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6509-01 1 17082628 17082628 C T MST1L RNA 0.21 TCGA-EI-6509-01 1 178408642 178408642 G C RASAL2 Missense_Mutation p.G254R 0.31 tolerated(0.1) benign(0.413) TCGA-EI-6509-01 1 18812225 18812225 C T KLHDC7A 3'UTR 0.47 TCGA-EI-6509-01 1 20073057 20073057 C A TMCO4 Missense_Mutation p.A217S 0.46 tolerated(0.05) possibly_damaging(0.61) TCGA-EI-6509-01 1 235318222 235318222 T C RBM34 Missense_Mutation p.N191D 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6509-01 1 52498337 52498337 A T KTI12 3'UTR 0.35 TCGA-EI-6509-01 1 914334 914334 G A C1orf170 Silent p.S598S 0.47 TCGA-EI-6509-01 20 2446404 2446404 G A SNRPB Nonsense_Mutation p.R73* 0.16 TCGA-EI-6509-01 20 49520469 49520470 - T ADNP Frame_Shift_Ins p.I22Nfs*3 0.41 TCGA-EI-6509-01 20 58330341 58330341 G A PHACTR3 Missense_Mutation p.G155R 0.27 tolerated(0.23) benign(0.058) TCGA-EI-6509-01 22 18899293 18899293 G C DGCR6 3'UTR 0.37 TCGA-EI-6509-01 22 32875095 32875095 G C FBXO7 Missense_Mutation p.A84P 0.36 tolerated(0.09) benign(0.063) TCGA-EI-6509-01 2 141643767 141643767 G T LRP1B Missense_Mutation p.L1302I 0.43 benign(0.364) TCGA-EI-6509-01 2 185803513 185803513 G A ZNF804A Silent p.Q1130Q 0.50 TCGA-EI-6509-01 2 192288687 192288687 C G MYO1B 3'UTR 0.40 TCGA-EI-6509-01 2 196877626 196877626 A G DNAH7 Silent p.L292L 0.40 TCGA-EI-6509-01 2 43452464 43452465 - G ZFP36L2 Frame_Shift_Ins p.R160Pfs*314 0.41 TCGA-EI-6509-01 2 73836723 73836723 A C ALMS1 Missense_Mutation p.K4163T 0.36 probably_damaging(0.999) TCGA-EI-6509-01 3 47545905 47545905 G T ELP6 Missense_Mutation p.Q80K 0.13 deleterious(0.02) probably_damaging(0.997) TCGA-EI-6509-01 3 50222213 50222213 C T SEMA3F Silent p.A474A 0.49 TCGA-EI-6509-01 4 151837794 151837794 C A LRBA Missense_Mutation p.D248Y 0.70 deleterious(0) probably_damaging(1) TCGA-EI-6509-01 4 39757335 39757335 G A UBE2K Missense_Mutation p.C92Y 0.35 deleterious(0) probably_damaging(1) TCGA-EI-6509-01 5 112128143 112128143 C T APC Nonsense_Mutation p.R216* 0.81 TCGA-EI-6509-01 5 140595284 140595284 G A PCDHB13 Missense_Mutation p.R530H 0.39 tolerated_low_confidence(0.24) benign(0.003) TCGA-EI-6509-01 5 174938494 174938494 G A SFXN1 Missense_Mutation p.V159I 0.39 deleterious(0.02) benign(0.272) TCGA-EI-6509-01 5 61762983 61762983 C T IPO11 Missense_Mutation p.A221V 0.36 tolerated(1) benign(0.017) TCGA-EI-6509-01 5 7878078 7878078 G C MTRR Silent p.P168P 0.31 TCGA-EI-6509-01 5 79031575 79031575 G T CMYA5 Missense_Mutation p.M2329I 0.36 benign(0.003) TCGA-EI-6509-01 6 151939132 151939132 C T CCDC170 Silent p.T666T 0.46 TCGA-EI-6509-01 6 32609784 32609784 G A HLA-DQA1 Missense_Mutation p.V123M 0.46 deleterious(0.01) benign(0.058) TCGA-EI-6509-01 6 56481118 56481118 C A DST Intron 0.33 TCGA-EI-6509-01 6 57011902 57011902 A G ZNF451 Missense_Mutation p.N340S 0.35 deleterious(0.03) benign(0.035) TCGA-EI-6509-01 7 14775733 14775733 C T DGKB Missense_Mutation p.M85I 0.38 tolerated(0.4) benign(0.044) TCGA-EI-6509-01 7 151680230 151680230 C A GALNTL5 Missense_Mutation p.S176R 0.46 deleterious(0) probably_damaging(1) TCGA-EI-6509-01 7 31862716 31862716 C T PDE1C Missense_Mutation p.R578Q 0.42 deleterious(0) possibly_damaging(0.895) TCGA-EI-6509-01 7 41729984 41729984 G A INHBA Missense_Mutation p.P182L 0.39 tolerated(0.11) benign(0.009) TCGA-EI-6509-01 7 48089572 48089572 C T C7orf57 Silent p.P201P 0.47 TCGA-EI-6509-01 7 5262244 5262245 - A WIPI2 Frame_Shift_Ins p.R228Kfs*13 0.29 TCGA-EI-6509-01 8 23709853 23709853 C T STC1 Missense_Mutation p.G55R 0.65 deleterious(0) probably_damaging(0.972) TCGA-EI-6509-01 8 26364999 26364999 G C PNMA2 3'UTR 0.50 TCGA-EI-6509-01 8 38153316 38153316 G - WHSC1L1 Frame_Shift_Del p.Y971* 0.42 TCGA-EI-6509-01 8 86572813 86572813 G A REXO1L1P 3'UTR 0.10 TCGA-EI-6509-01 8 93004031 93004031 T A RUNX1T1 Missense_Mutation p.Y287F 0.25 tolerated(0.32) benign(0.003) TCGA-EI-6509-01 9 35733224 35733224 G A CREB3 Missense_Mutation p.C97Y 0.41 tolerated(1) benign(0.002) TCGA-EI-6509-01 9 66466414 66466414 A G RP11-262H14.1 RNA 0.45 TCGA-EI-6509-01 X 105169019 105169019 A G NRK Missense_Mutation p.Q1104R 0.10 tolerated(0.22) benign(0.109) TCGA-EI-6509-01 X 142717119 142717119 A T SLITRK4 Silent p.T602T 0.67 TCGA-EI-6509-01 X 30327360 30327360 A T NR0B1 Missense_Mutation p.C41S 0.86 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EI-6509-01 X 82763753 82763753 G A POU3F4 Missense_Mutation p.V141M 0.26 tolerated(0.43) benign(0.216) TCGA-EI-6510-01 10 104161814 104161814 G A NFKB2 Missense_Mutation p.G826R 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6510-01 10 129209180 129209180 G C DOCK1 Missense_Mutation p.E1453Q 0.27 deleterious(0) benign(0.248) TCGA-EI-6510-01 10 13481451 13481451 C T BEND7 Silent p.A376A 0.40 TCGA-EI-6510-01 10 32306152 32306152 G A KIF5B Missense_Mutation p.R894C 0.30 deleterious(0) possibly_damaging(0.732) TCGA-EI-6510-01 10 73520485 73520485 T C C10orf54 Intron 0.36 TCGA-EI-6510-01 10 73972965 73972965 T C ASCC1 Missense_Mutation p.D31G 0.34 tolerated(0.11) benign(0.045) TCGA-EI-6510-01 11 103866948 103866948 T G PDGFD Missense_Mutation p.I119L 0.12 tolerated(0.67) benign(0.012) TCGA-EI-6510-01 11 128680652 128680652 G A FLI1 Silent p.S376S 0.15 TCGA-EI-6510-01 11 27390274 27390274 C - LGR4 Frame_Shift_Del p.A666Pfs*6 0.30 TCGA-EI-6510-01 11 62393217 62393217 G T GANAB 3'UTR 0.35 TCGA-EI-6510-01 11 62393218 62393218 G T GANAB 3'UTR 0.33 TCGA-EI-6510-01 11 7111807 7111807 C A RBMXL2 3'UTR 0.27 TCGA-EI-6510-01 11 89028403 89028403 G T TYR Missense_Mutation p.V487F 0.49 deleterious(0.01) benign(0.443) TCGA-EI-6510-01 12 113442751 113442751 G A OAS2 Missense_Mutation p.A398T 0.16 deleterious(0.05) benign(0.358) TCGA-EI-6510-01 12 124498917 124498917 G A ZNF664 3'UTR 0.08 TCGA-EI-6510-01 12 130884319 130884319 A G RIMBP2 Missense_Mutation p.F1013L 0.20 deleterious(0) probably_damaging(0.978) TCGA-EI-6510-01 12 132685760 132685760 C T GALNT9 Missense_Mutation p.R71H 0.18 deleterious(0) probably_damaging(0.999) TCGA-EI-6510-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.34 deleterious(0) benign(0.361) TCGA-EI-6510-01 12 47629143 47629143 C T PCED1B Silent p.S99S 0.19 TCGA-EI-6510-01 12 55759698 55759698 A T OR6C75 Missense_Mutation p.L268F 0.09 tolerated_low_confidence(0.15) probably_damaging(1) TCGA-EI-6510-01 12 56092237 56092237 G A ITGA7 Silent p.C378C 0.08 TCGA-EI-6510-01 12 7802008 7802008 T C APOBEC1 3'UTR 0.45 TCGA-EI-6510-01 12 85438524 85438524 T C LRRIQ1 Silent p.N91N 0.13 TCGA-EI-6510-01 12 85438525 85438525 C A LRRIQ1 Missense_Mutation p.H92N 0.13 tolerated(0.13) benign(0.125) TCGA-EI-6510-01 12 85521777 85521777 G A LRRIQ1 Missense_Mutation p.R1392Q 0.16 tolerated(1) benign(0) TCGA-EI-6510-01 13 113202443 113202443 C T TUBGCP3 Silent p.L338L 0.10 TCGA-EI-6510-01 13 37453888 37453888 C T SMAD9 5'UTR 0.57 TCGA-EI-6510-01 13 38210983 38210983 A C TRPC4 3'UTR 0.20 TCGA-EI-6510-01 14 105268774 105268775 TG - ZBTB42 Frame_Shift_Del p.C414Wfs*16 0.15 TCGA-EI-6510-01 14 65216156 65216156 G A SPTB Silent p.T2285T 0.43 TCGA-EI-6510-01 14 65253730 65253730 G A SPTB Missense_Mutation p.R985W 0.36 deleterious(0) possibly_damaging(0.766) TCGA-EI-6510-01 14 95899734 95899734 G A SYNE3 Missense_Mutation p.R851W 0.33 deleterious(0) probably_damaging(0.984) TCGA-EI-6510-01 15 34356328 34356328 G A CHRM5 Silent p.K470K 0.13 TCGA-EI-6510-01 15 79589426 79589426 T A ANKRD34C 3'UTR 0.10 TCGA-EI-6510-01 15 83455685 83455685 G A FSD2 Missense_Mutation p.T153I 0.37 deleterious(0.01) benign(0.13) TCGA-EI-6510-01 15 83718827 83718827 A G BTBD1 Missense_Mutation p.I221T 0.34 tolerated(0.08) benign(0.266) TCGA-EI-6510-01 15 84659942 84659942 G A ADAMTSL3 Missense_Mutation p.V1317M 0.33 deleterious(0.03) benign(0.13) TCGA-EI-6510-01 15 89070831 89070831 G A DET1 Missense_Mutation p.R435W 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6510-01 15 95020006 95020006 C A MCTP2 Missense_Mutation p.P851Q 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6510-01 16 1033737 1033737 C T SOX8 Silent p.S144S 0.15 TCGA-EI-6510-01 16 10524822 10524822 G A ATF7IP2 Silent p.S115S 0.37 TCGA-EI-6510-01 16 14041760 14041760 C T ERCC4 Silent p.L769L 0.22 TCGA-EI-6510-01 16 27078807 27078807 G A C16orf82 RNA 0.28 TCGA-EI-6510-01 16 29918130 29918130 G A KCTD13 3'UTR 0.25 TCGA-EI-6510-01 16 30616761 30616761 T C ZNF689 Silent p.R109R 0.11 TCGA-EI-6510-01 16 31499714 31499714 G A SLC5A2 Silent p.A344A 0.32 TCGA-EI-6510-01 16 74445630 74445630 G A CLEC18B Silent p.D307D 0.10 TCGA-EI-6510-01 16 87723385 87723385 C T JPH3 Silent p.D473D 0.35 TCGA-EI-6510-01 17 33768057 33768057 T A SLFN13 Missense_Mutation p.N751Y 0.11 tolerated(0.06) benign(0.059) TCGA-EI-6510-01 17 40028282 40028282 T A ACLY Intron 0.32 TCGA-EI-6510-01 17 43195850 43195850 T A PLCD3 Missense_Mutation p.H308L 0.38 tolerated(0.46) probably_damaging(0.967) TCGA-EI-6510-01 17 48614238 48614238 G A EPN3 Silent p.K107K 0.34 TCGA-EI-6510-01 17 64208154 64208154 G A APOH 3'UTR 0.15 TCGA-EI-6510-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.11 deleterious(0) probably_damaging(1) TCGA-EI-6510-01 19 15281494 15281494 G A NOTCH3 Missense_Mutation p.R1627W 0.13 tolerated(0.17) benign(0.058) TCGA-EI-6510-01 19 19431730 19431730 C T MAU2 Missense_Mutation p.A21V 0.09 tolerated(0.16) unknown(0) TCGA-EI-6510-01 19 3959259 3959259 G A DAPK3 Missense_Mutation p.A402V 0.58 tolerated_low_confidence(1) benign(0.001) TCGA-EI-6510-01 19 50060481 50060481 C T NOSIP Missense_Mutation p.R95Q 0.41 tolerated(0.39) benign(0.001) TCGA-EI-6510-01 19 58773800 58773800 G A ZNF544 Missense_Mutation p.G610R 0.36 deleterious(0) probably_damaging(0.968) TCGA-EI-6510-01 19 7805351 7805351 G A CD209 3'UTR 0.41 TCGA-EI-6510-01 1 179887078 179887078 G A TOR1AIP1 Missense_Mutation p.A486T 0.11 deleterious(0) probably_damaging(0.999) TCGA-EI-6510-01 1 186276728 186276728 C T PRG4 Missense_Mutation p.P626L 0.17 unknown(0) TCGA-EI-6510-01 1 20470056 20470056 G A PLA2G2F Missense_Mutation p.R96H 0.46 tolerated(0.13) benign(0.048) TCGA-EI-6510-01 1 225506293 225506293 C T DNAH14 Silent p.A2337A 0.09 TCGA-EI-6510-01 1 236918421 236918421 G A ACTN2 Missense_Mutation p.D693N 0.31 tolerated(0.14) probably_damaging(0.999) TCGA-EI-6510-01 1 27674052 27674052 G T SYTL1 Missense_Mutation p.S111I 0.43 deleterious(0.03) benign(0.008) TCGA-EI-6510-01 1 43131648 43131648 C T PPIH Intron 0.12 TCGA-EI-6510-01 20 62421669 62421669 C T ZBTB46 Missense_Mutation p.A148T 0.13 tolerated(0.44) benign(0.019) TCGA-EI-6510-01 20 62597771 62597771 G A ZNF512B Missense_Mutation p.P253S 0.07 tolerated_low_confidence(0.08) benign(0.009) TCGA-EI-6510-01 21 11039261 11039261 A T BAGE2 RNA 0.05 TCGA-EI-6510-01 21 15399910 15399910 C A AP001347.6 RNA 0.13 TCGA-EI-6510-01 22 20843503 20843503 A G KLHL22 5'UTR 0.10 TCGA-EI-6510-01 22 21075599 21075599 G A PI4KA Silent p.G1701G 0.08 TCGA-EI-6510-01 22 43933328 43933328 C T EFCAB6 Missense_Mutation p.R1326H 0.24 deleterious(0.04) benign(0.329) TCGA-EI-6510-01 22 50617527 50617527 C T PANX2 Nonsense_Mutation p.R619* 0.17 TCGA-EI-6510-01 2 11355647 11355647 A - ROCK2 Frame_Shift_Del p.L529Wfs*8 0.25 TCGA-EI-6510-01 2 11777956 11777956 C A GREB1 Missense_Mutation p.H1821N 0.37 tolerated(0.33) benign(0.391) TCGA-EI-6510-01 2 135744386 135744386 G C MAP3K19 Missense_Mutation p.R686G 0.23 deleterious(0.03) possibly_damaging(0.578) TCGA-EI-6510-01 2 165984177 165984177 C T SCN3A Silent p.E1119E 0.07 TCGA-EI-6510-01 2 179605985 179605985 C A TTN Missense_Mutation p.G3992V 0.32 TCGA-EI-6510-01 2 179611219 179611219 C A TTN Intron 0.36 TCGA-EI-6510-01 2 203242059 203242059 C T BMPR2 5'UTR 0.43 TCGA-EI-6510-01 2 212286805 212286805 C T ERBB4 Missense_Mutation p.R964K 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6510-01 2 230377634 230377634 A T DNER Missense_Mutation p.C338S 0.06 deleterious(0) probably_damaging(1) TCGA-EI-6510-01 2 239013475 239013475 G A ESPNL Missense_Mutation p.V222I 0.33 tolerated(0.21) benign(0.034) TCGA-EI-6510-01 2 61577702 61577702 C T USP34 Splice_Site p.X459_splice 0.34 TCGA-EI-6510-01 3 113956107 113956107 G A ZNF80 5'UTR 0.22 TCGA-EI-6510-01 3 138329770 138329770 C T FAIM 5'UTR 0.16 TCGA-EI-6510-01 3 148858194 148858194 A C HPS3 Missense_Mutation p.L207F 0.08 deleterious(0.02) probably_damaging(0.986) TCGA-EI-6510-01 3 15311315 15311315 C T SH3BP5 Missense_Mutation p.E134K 0.45 deleterious(0.01) probably_damaging(0.98) TCGA-EI-6510-01 3 15776985 15776985 G A ANKRD28 Missense_Mutation p.S161F 0.19 tolerated(0.08) probably_damaging(0.926) TCGA-EI-6510-01 3 170846571 170846571 C T TNIK Missense_Mutation p.E569K 0.49 deleterious_low_confidence(0.03) probably_damaging(0.914) TCGA-EI-6510-01 3 185542704 185542704 G C IGF2BP2 Silent p.T15T 0.29 TCGA-EI-6510-01 3 185542705 185542705 G T IGF2BP2 Missense_Mutation p.T15N 0.30 tolerated(0.31) probably_damaging(0.994) TCGA-EI-6510-01 3 185639878 185639878 G A TRA2B Missense_Mutation p.R187C 0.48 deleterious(0.02) possibly_damaging(0.584) TCGA-EI-6510-01 3 2861240 2861240 G A CNTN4 Silent p.L143L 0.10 TCGA-EI-6510-01 3 41973335 41973335 C T ULK4 Splice_Site p.X181_splice 0.05 TCGA-EI-6510-01 3 47385056 47385056 C T KLHL18 Silent p.Y450Y 0.35 TCGA-EI-6510-01 3 51930880 51930880 T C IQCF1 Missense_Mutation p.T47A 0.16 tolerated(0.76) benign(0.002) TCGA-EI-6510-01 3 68466553 68466553 G A FAM19A1 Missense_Mutation p.R81Q 0.23 tolerated(0.77) benign(0.025) TCGA-EI-6510-01 3 72866503 72866503 G A SHQ1 Nonsense_Mutation p.R254* 0.18 TCGA-EI-6510-01 3 97806804 97806804 G A OR5AC2 Missense_Mutation p.R263H 0.29 tolerated(0.3) benign(0.051) TCGA-EI-6510-01 4 154626007 154626007 C T TLR2 Missense_Mutation p.R650W 0.33 deleterious(0) possibly_damaging(0.867) TCGA-EI-6510-01 4 187560893 187560893 C - FAT1 Frame_Shift_Del p.D1209Mfs*5 0.24 TCGA-EI-6510-01 4 187628149 187628149 C T FAT1 Missense_Mutation p.V945I 0.23 benign(0.021) TCGA-EI-6510-01 4 89425522 89425522 G T HERC5 Missense_Mutation p.V908L 0.42 tolerated(0.07) benign(0.134) TCGA-EI-6510-01 5 112128184 112128188 TCGTA - APC Frame_Shift_Del p.R230Tfs*20 0.56 TCGA-EI-6510-01 5 135276453 135276453 A G FBXL21 RNA 0.30 TCGA-EI-6510-01 5 137726985 137726986 AC G KDM3B Frame_Shift_Del p.D555Gfs*10 0.37 TCGA-EI-6510-01 5 138718225 138718225 C T SLC23A1 Missense_Mutation p.E36K 0.29 tolerated(0.38) possibly_damaging(0.844) TCGA-EI-6510-01 5 140209305 140209305 G A PCDHA6 Silent p.P543P 0.43 TCGA-EI-6510-01 5 140209489 140209489 G A PCDHA6 Missense_Mutation p.A605T 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.745) TCGA-EI-6510-01 5 140250875 140250875 C T PCDHA11 Silent p.G729G 0.46 TCGA-EI-6510-01 5 140346848 140346848 G A PCDHAC2 Missense_Mutation p.R166H 0.10 deleterious(0) possibly_damaging(0.903) TCGA-EI-6510-01 5 150921910 150921910 C T FAT2 Silent p.A2926A 0.27 TCGA-EI-6510-01 5 167841592 167841592 A T WWC1 Missense_Mutation p.E394V 0.38 deleterious(0) probably_damaging(0.972) TCGA-EI-6510-01 5 33549453 33549453 G A ADAMTS12 Silent p.R1387R 0.10 TCGA-EI-6510-01 5 3599862 3599862 C T IRX1 Missense_Mutation p.S267L 0.50 tolerated(0.4) possibly_damaging(0.885) TCGA-EI-6510-01 5 44809238 44809238 A G MRPS30 Silent p.A58A 0.10 TCGA-EI-6510-01 5 96430636 96430636 G A LIX1 Missense_Mutation p.S222F 0.39 tolerated(0.31) benign(0.078) TCGA-EI-6510-01 6 111318396 111318396 C A RPF2 Nonsense_Mutation p.S82* 0.31 TCGA-EI-6510-01 6 152708320 152708320 G A SYNE1 Missense_Mutation p.R2792C 0.36 benign(0.002) TCGA-EI-6510-01 6 24454269 24454269 C T GPLD1 Missense_Mutation p.A437T 0.37 deleterious(0) possibly_damaging(0.821) TCGA-EI-6510-01 6 28333754 28333754 C T ZKSCAN3 Nonsense_Mutation p.R437* 0.23 TCGA-EI-6510-01 6 46832857 46832857 C A GPR116 Missense_Mutation p.V638F 0.37 tolerated(0.33) benign(0.005) TCGA-EI-6510-01 6 65612337 65612337 G A EYS Nonsense_Mutation p.Q900* 0.09 TCGA-EI-6510-01 7 149576800 149576800 G A ATP6V0E2 3'UTR 0.36 TCGA-EI-6510-01 7 158672483 158672483 C A WDR60 Silent p.R228R 0.61 TCGA-EI-6510-01 7 50544323 50544323 C A DDC Missense_Mutation p.R347L 0.31 deleterious(0.01) benign(0.146) TCGA-EI-6510-01 7 6230096 6230096 A C CYTH3 Missense_Mutation p.L34R 0.52 deleterious(0) unknown(0) TCGA-EI-6510-01 7 70597883 70597883 C T WBSCR17 Missense_Mutation p.A32V 0.45 tolerated_low_confidence(0.26) benign(0.008) TCGA-EI-6510-01 7 73011798 73011798 G A MLXIPL Silent p.T439T 0.65 TCGA-EI-6510-01 7 87092143 87092143 G A ABCB4 Missense_Mutation p.L73F 0.18 tolerated(0.07) benign(0.108) TCGA-EI-6510-01 7 97933535 97933552 TGGGGCCTTAAAGGTGGA - BAIAP2L1 In_Frame_Del p.S460_P465del 0.73 TCGA-EI-6510-01 8 103663555 103663555 G A KLF10 Silent p.S335S 0.39 TCGA-EI-6510-01 8 118165303 118165303 G A SLC30A8 Missense_Mutation p.R131Q 0.42 tolerated(0.5) benign(0.034) TCGA-EI-6510-01 8 133913707 133913707 T C TG Silent p.C1181C 0.23 TCGA-EI-6510-01 8 22398232 22398232 G A PPP3CC Missense_Mutation p.A495T 0.18 tolerated(0.52) benign(0.001) TCGA-EI-6510-01 8 36788611 36788611 G A KCNU1 Missense_Mutation p.R960Q 0.39 deleterious(0) probably_damaging(0.993) TCGA-EI-6510-01 8 42587321 42587321 A - CHRNB3 Frame_Shift_Del p.V292Sfs*13 0.34 TCGA-EI-6510-01 8 42940502 42940502 C T FNTA 3'UTR 0.37 TCGA-EI-6510-01 8 82439312 82439312 G T FABP12 Missense_Mutation p.D97E 0.38 tolerated(0.1) benign(0.249) TCGA-EI-6510-01 9 116185755 116185755 G A C9orf43 Silent p.A211A 0.32 TCGA-EI-6510-01 9 140322516 140322516 G C NOXA1 Missense_Mutation p.A98P 0.35 deleterious(0) probably_damaging(0.973) TCGA-EI-6510-01 9 33240219 33240219 C T SPINK4 Nonsense_Mutation p.Q5* 0.33 TCGA-EI-6510-01 X 106108792 106108792 C T TBC1D8B Missense_Mutation p.R786C 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6510-01 X 107018441 107018441 C T TSC22D3 Missense_Mutation p.R70Q 0.27 tolerated(0.12) probably_damaging(0.954) TCGA-EI-6510-01 X 114239799 114239799 G A IL13RA2 Silent p.T359T 0.10 TCGA-EI-6510-01 X 118708691 118708691 G A UBE2A Missense_Mutation p.R6Q 0.25 tolerated(0.24) benign(0.001) TCGA-EI-6510-01 X 140984407 140984407 C G MAGEC3 Intron 0.63 TCGA-EI-6510-01 X 144907164 144907164 G A SLITRK2 3'UTR 0.38 TCGA-EI-6510-01 X 14891824 14891824 A G MOSPD2 Missense_Mutation p.N8S 0.22 tolerated(0.12) benign(0.021) TCGA-EI-6510-01 X 150348780 150348780 T C GPR50 Missense_Mutation p.I242T 0.16 deleterious(0.01) possibly_damaging(0.838) TCGA-EI-6510-01 X 24608202 24608202 C T PCYT1B Missense_Mutation p.V142I 0.17 deleterious(0.02) possibly_damaging(0.718) TCGA-EI-6510-01 X 41333844 41333844 C T NYX Missense_Mutation p.R380C 0.25 deleterious(0) possibly_damaging(0.841) TCGA-EI-6510-01 X 46466524 46466524 C T SLC9A7 Missense_Mutation p.A681T 0.12 tolerated(0.24) benign(0.029) TCGA-EI-6510-01 X 47040620 47040620 C T RBM10 Nonsense_Mutation p.Q419* 0.43 TCGA-EI-6510-01 X 47836341 47836341 G C ZNF182 Missense_Mutation p.T382S 0.34 deleterious(0.03) probably_damaging(0.951) TCGA-EI-6510-01 X 70320926 70320926 G A FOXO4 Silent p.A282A 0.39 TCGA-EI-6511-01 10 116068229 116068229 G A AFAP1L2 Silent p.S310S 0.08 TCGA-EI-6511-01 10 50531935 50531935 C A C10orf71 Missense_Mutation p.P449T 0.33 deleterious(0) probably_damaging(1) TCGA-EI-6511-01 10 75481180 75481180 G T RP11-574K11.28 RNA 0.23 TCGA-EI-6511-01 11 116738739 116738739 C T SIK3 Intron 0.07 TCGA-EI-6511-01 11 120996320 120996320 G A TECTA Missense_Mutation p.D505N 0.32 tolerated(0.12) benign(0.098) TCGA-EI-6511-01 11 26587085 26587085 G T MUC15 Silent p.S134S 0.32 TCGA-EI-6511-01 11 4470881 4470884 CTTC TTT OR52K2 Frame_Shift_Del p.L106Ffs*33 0.31 TCGA-EI-6511-01 11 55587577 55587577 T G OR5D18 Missense_Mutation p.L158V 0.36 deleterious(0.04) benign(0.042) TCGA-EI-6511-01 11 56128335 56128335 A T OR8J1 Missense_Mutation p.T205S 0.06 deleterious(0.04) benign(0.084) TCGA-EI-6511-01 11 66258779 66258779 A T DPP3 Silent p.G241G 0.28 TCGA-EI-6511-01 11 66372848 66372848 C T CCS Silent p.D176D 0.33 TCGA-EI-6511-01 11 92532202 92532202 G T FAT3 Missense_Mutation p.G2008V 0.26 probably_damaging(1) TCGA-EI-6511-01 12 10218212 10218212 C T CLEC9A Missense_Mutation p.A236V 0.29 tolerated(0.07) benign(0.048) TCGA-EI-6511-01 12 123519095 123519095 C A PITPNM2 Nonsense_Mutation p.E15* 0.36 TCGA-EI-6511-01 12 41957421 41957421 C T PDZRN4 Silent p.I479I 0.32 TCGA-EI-6511-01 12 60168918 60168918 C T SLC16A7 Missense_Mutation p.S281L 0.38 deleterious(0.03) probably_damaging(0.928) TCGA-EI-6511-01 13 114774873 114774873 G A RASA3 Missense_Mutation p.A553V 0.50 deleterious(0.02) probably_damaging(0.994) TCGA-EI-6511-01 13 36049902 36049902 G A MAB21L1 Missense_Mutation p.A125V 0.24 tolerated(0.08) probably_damaging(0.977) TCGA-EI-6511-01 13 48528600 48528600 C T SUCLA2 Missense_Mutation p.E299K 0.27 tolerated(0.07) benign(0.005) TCGA-EI-6511-01 14 103390090 103390090 A G AMN Missense_Mutation p.D29G 0.43 tolerated(0.06) benign(0.016) TCGA-EI-6511-01 14 39722059 39722059 G A MIA2 Missense_Mutation p.E559K 0.26 deleterious(0.02) benign(0.034) TCGA-EI-6511-01 15 101427775 101427775 A G ALDH1A3 Splice_Site p.X69_splice 0.10 TCGA-EI-6511-01 16 16302688 16302688 G C ABCC6 Missense_Mutation p.L231V 0.08 deleterious(0) possibly_damaging(0.831) TCGA-EI-6511-01 16 50353155 50353155 C T BRD7 Silent p.T642T 0.30 TCGA-EI-6511-01 16 51173898 51173898 C T SALL1 Silent p.T745T 0.31 TCGA-EI-6511-01 16 67719527 67719527 T C GFOD2 Missense_Mutation p.E31G 0.08 tolerated(0.08) benign(0.41) TCGA-EI-6511-01 17 16725707 16725707 C T AC022596.6 RNA 0.14 TCGA-EI-6511-01 17 3100928 3100928 T C OR1A2 Missense_Mutation p.L39P 0.62 deleterious(0) probably_damaging(0.928) TCGA-EI-6511-01 17 3324546 3324546 C G OR3A3 Missense_Mutation p.H229D 0.60 deleterious(0.01) possibly_damaging(0.703) TCGA-EI-6511-01 17 3854062 3854062 C T ATP2A3 Missense_Mutation p.D157N 0.68 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6511-01 17 4648157 4648157 G A ZMYND15 Silent p.L618L 0.64 TCGA-EI-6511-01 17 53155545 53155545 A G STXBP4 Missense_Mutation p.H432R 0.33 tolerated(0.31) benign(0.002) TCGA-EI-6511-01 17 56353022 56353022 G T MPO Missense_Mutation p.H416N 0.30 deleterious(0.01) probably_damaging(1) TCGA-EI-6511-01 17 7129382 7129382 A C DVL2 Silent p.P671P 0.54 TCGA-EI-6511-01 17 72850917 72850917 G A GRIN2C Silent p.A105A 0.25 TCGA-EI-6511-01 17 74003408 74003408 G A EVPL Missense_Mutation p.L1960F 0.32 deleterious(0.05) possibly_damaging(0.766) TCGA-EI-6511-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.64 tolerated(0.11) benign(0.308) TCGA-EI-6511-01 17 8633455 8633455 C T CCDC42 Missense_Mutation p.R315Q 0.30 deleterious_low_confidence(0.02) benign(0.01) TCGA-EI-6511-01 18 5892008 5892008 G A TMEM200C Missense_Mutation p.R19C 0.43 deleterious(0) probably_damaging(0.993) TCGA-EI-6511-01 18 65178917 65178917 C T DSEL Missense_Mutation p.A987T 0.44 tolerated(0.43) benign(0.002) TCGA-EI-6511-01 19 10404378 10404378 A G ICAM5 Silent p.A490A 0.11 TCGA-EI-6511-01 19 1058263 1058263 G T ABCA7 Missense_Mutation p.R1715L 0.31 deleterious(0.01) benign(0.067) TCGA-EI-6511-01 19 15350806 15350806 A G BRD4 Missense_Mutation p.L1066P 0.35 possibly_damaging(0.766) TCGA-EI-6511-01 19 17631753 17631753 C T PGLS Missense_Mutation p.R214C 0.22 deleterious(0) probably_damaging(0.978) TCGA-EI-6511-01 19 36362820 36362820 A G APLP1 Silent p.E244E 0.10 TCGA-EI-6511-01 19 7687667 7687667 T C XAB2 Missense_Mutation p.E451G 0.10 tolerated(0.48) benign(0.002) TCGA-EI-6511-01 1 152187936 152187936 G A HRNR Nonsense_Mutation p.R2057* 0.15 TCGA-EI-6511-01 1 171162476 171162476 G T FMO2 Missense_Mutation p.E45D 0.41 tolerated(0.29) benign(0.015) TCGA-EI-6511-01 1 180945705 180945705 G A STX6 3'UTR 0.12 TCGA-EI-6511-01 1 207245690 207245690 C T PFKFB2 Nonsense_Mutation p.Q498* 0.25 TCGA-EI-6511-01 1 237754052 237754052 C A RYR2 Missense_Mutation p.P1307Q 0.28 benign(0.001) TCGA-EI-6511-01 1 52704989 52704989 C A ZFYVE9 Missense_Mutation p.P634T 0.49 tolerated(0.55) benign(0) TCGA-EI-6511-01 1 60338669 60338669 C A HOOK1 3'UTR 0.37 TCGA-EI-6511-01 20 31023814 31023814 C A ASXL1 Nonsense_Mutation p.S1100* 0.15 TCGA-EI-6511-01 20 60895905 60895905 G A LAMA5 Missense_Mutation p.R2180W 0.20 benign(0.419) TCGA-EI-6511-01 20 62340258 62340258 C T ZGPAT Missense_Mutation p.A109V 0.18 tolerated(0.29) benign(0.004) TCGA-EI-6511-01 22 37602870 37602870 G A SSTR3 Missense_Mutation p.R325C 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6511-01 22 38229753 38229753 A G ANKRD54 Missense_Mutation p.L162P 0.10 deleterious(0) probably_damaging(0.999) TCGA-EI-6511-01 22 40814967 40814967 G A MKL1 Missense_Mutation p.S492L 0.28 deleterious(0) probably_damaging(0.945) TCGA-EI-6511-01 22 45309790 45309790 G A PHF21B Missense_Mutation p.S248L 0.30 tolerated(0.1) benign(0.002) TCGA-EI-6511-01 2 130737939 130737939 G A RAB6C Missense_Mutation p.R84H 0.19 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EI-6511-01 2 15644285 15644285 C T NBAS Missense_Mutation p.R313H 0.28 tolerated(0.14) benign(0.01) TCGA-EI-6511-01 2 232602830 232602830 A T PDE6D Missense_Mutation p.I53N 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6511-01 2 5841386 5841387 - C SOX11 3'UTR 0.32 TCGA-EI-6511-01 2 74007201 74007201 G A DUSP11 Silent p.C14C 0.27 TCGA-EI-6511-01 3 119236135 119236135 C T TIMMDC1 Missense_Mutation p.A227V 0.37 tolerated(0.1) benign(0.014) TCGA-EI-6511-01 3 121340711 121340711 A T FBXO40 Missense_Mutation p.E145D 0.36 tolerated(0.33) benign(0.007) TCGA-EI-6511-01 3 41439656 41439656 C T ULK4 Missense_Mutation p.E1198K 0.25 tolerated(0.05) benign(0.394) TCGA-EI-6511-01 3 56052947 56052947 G A ERC2 Missense_Mutation p.T585M 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6511-01 3 6903417 6903417 C T GRM7 Silent p.Y114Y 0.47 TCGA-EI-6511-01 3 77526693 77526693 C T ROBO2 Nonsense_Mutation p.R189* 0.30 TCGA-EI-6511-01 4 106155778 106155779 - A TET2 Frame_Shift_Ins p.T229Nfs*25 0.29 TCGA-EI-6511-01 4 107151534 107151534 G A TBCK Missense_Mutation p.S587L 0.28 deleterious(0) probably_damaging(0.993) TCGA-EI-6511-01 4 141888970 141888970 C T RNF150 Missense_Mutation p.S181N 0.28 tolerated(0.43) benign(0.01) TCGA-EI-6511-01 4 44450182 44450182 A G KCTD8 Missense_Mutation p.L120P 0.08 deleterious(0) probably_damaging(0.999) TCGA-EI-6511-01 5 11199694 11199694 C A CTNND2 Missense_Mutation p.G614V 0.34 deleterious(0) probably_damaging(1) TCGA-EI-6511-01 5 112175358 112175358 C - APC Frame_Shift_Del p.S1356* 0.44 TCGA-EI-6511-01 5 136973013 136973013 G A KLHL3 Missense_Mutation p.R431W 0.33 deleterious(0) probably_damaging(1) TCGA-EI-6511-01 5 140788856 140788856 G C PCDHGB6 Missense_Mutation p.G363R 0.61 deleterious(0.01) possibly_damaging(0.896) TCGA-EI-6511-01 5 38407203 38407203 C T EGFLAM Nonsense_Mutation p.R368* 0.31 TCGA-EI-6511-01 5 647951 647951 C T CEP72 Silent p.G566G 0.26 TCGA-EI-6511-01 5 80497247 80497247 C T RASGRF2 Silent p.A964A 0.56 TCGA-EI-6511-01 5 93989079 93989079 G A ANKRD32 Missense_Mutation p.E329K 0.27 tolerated(0.16) benign(0.009) TCGA-EI-6511-01 6 10705025 10705025 T C PAK1IP1 Missense_Mutation p.F230L 0.51 tolerated(0.08) benign(0.016) TCGA-EI-6511-01 6 123699034 123699034 T C TRDN Missense_Mutation p.K399R 0.08 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-EI-6511-01 6 138200106 138200106 C T TNFAIP3 Silent p.H508H 0.45 TCGA-EI-6511-01 6 143086103 143086103 G A HIVEP2 Missense_Mutation p.S1784L 0.52 deleterious(0) probably_damaging(0.996) TCGA-EI-6511-01 6 29231691 29231691 G T XXbac-BPG308J9.3 RNA 0.49 TCGA-EI-6511-01 6 31753409 31753409 C T VARS Missense_Mutation p.G401E 0.50 deleterious(0.02) benign(0.166) TCGA-EI-6511-01 6 53519701 53519701 C T KLHL31 Missense_Mutation p.V124I 0.31 tolerated(0.9) benign(0.095) TCGA-EI-6511-01 7 115581765 115581765 T A TFEC Intron 0.40 TCGA-EI-6511-01 7 135347333 135347333 C T C7orf73 Silent p.L2L 0.39 TCGA-EI-6511-01 7 72907218 72907218 G C BAZ1B Missense_Mutation p.P202R 0.17 deleterious(0.01) probably_damaging(0.953) TCGA-EI-6511-01 7 76619591 76619591 C T UPK3B Intron 0.22 TCGA-EI-6511-01 7 88964910 88964910 C A ZNF804B Missense_Mutation p.Q872K 0.20 tolerated(0.83) benign(0.004) TCGA-EI-6511-01 7 94298674 94298674 G A PEG10 3'UTR 0.41 TCGA-EI-6511-01 7 99144716 99144716 G T FAM200A Missense_Mutation p.P439T 0.16 tolerated(0.05) possibly_damaging(0.798) TCGA-EI-6511-01 8 24773129 24773129 G A NEFM Silent p.Q364Q 0.62 TCGA-EI-6511-01 8 30210768 30210768 G T TUBBP1 RNA 0.14 TCGA-EI-6511-01 8 73849040 73849040 G A KCNB2 Missense_Mutation p.D484N 0.41 deleterious(0.02) benign(0.262) TCGA-EI-6511-01 9 100120006 100120006 C A CCDC180 Missense_Mutation p.T1165N 0.38 tolerated(0.44) benign(0) TCGA-EI-6511-01 9 21350824 21350824 A C IFNA6 Silent p.S21S 0.35 TCGA-EI-6511-01 9 34996374 34996374 C T DNAJB5 Silent p.F222F 0.38 TCGA-EI-6511-01 X 107834457 107834457 T A COL4A5 Silent p.P445P 0.42 TCGA-EI-6511-01 X 111698233 111698233 G A ZCCHC16 Missense_Mutation p.D93N 0.16 tolerated(0.61) benign(0.039) TCGA-EI-6511-01 X 32430016 32430016 T A DMD Missense_Mutation p.Q1362H 0.37 possibly_damaging(0.763) TCGA-EI-6511-01 X 70389187 70389187 A G NLGN3 Missense_Mutation p.Y596C 0.88 deleterious(0) probably_damaging(1) TCGA-EI-6511-01 X 8538695 8538695 C T KAL1 Missense_Mutation p.V303I 0.68 tolerated(0.58) benign(0.001) TCGA-EI-6511-01 X 89177518 89177518 A C TGIF2LX Missense_Mutation p.K145T 0.12 tolerated(0.12) benign(0.063) TCGA-EI-6511-01 X 91873306 91873306 C A PCDH11X Missense_Mutation p.D1137E 0.29 tolerated(0.35) benign(0.04) TCGA-EI-6512-01 10 131640502 131640502 C T EBF3 Missense_Mutation p.R408H 0.44 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-EI-6512-01 10 135009218 135009218 G A KNDC1 Missense_Mutation p.V543I 0.54 tolerated(0.24) benign(0.028) TCGA-EI-6512-01 10 14816377 14816377 G A FAM107B Missense_Mutation p.R96C 0.51 deleterious_low_confidence(0) benign(0.231) TCGA-EI-6512-01 10 37506662 37506662 C T ANKRD30A Silent p.A985A 0.08 TCGA-EI-6512-01 10 50341918 50341918 C T FAM170B Missense_Mutation p.D16N 0.24 deleterious(0.03) benign(0.006) TCGA-EI-6512-01 10 61962764 61962764 T C ANK3 Missense_Mutation p.N463S 0.45 probably_damaging(0.95) TCGA-EI-6512-01 10 75003184 75003185 - T DNAJC9 Frame_Shift_Ins p.S253Ifs*26 0.18 TCGA-EI-6512-01 10 99664434 99664434 G A CRTAC1 Missense_Mutation p.R330C 0.49 deleterious(0.03) possibly_damaging(0.862) TCGA-EI-6512-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6512-01 11 113270887 113270887 C T ANKK1 Silent p.A732A 0.37 TCGA-EI-6512-01 11 125351512 125351512 G C FEZ1 Missense_Mutation p.T110R 0.15 deleterious(0) probably_damaging(0.999) TCGA-EI-6512-01 11 128710054 128710054 T A KCNJ1 Missense_Mutation p.R48W 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6512-01 11 133788952 133788952 T C IGSF9B Intron 0.08 TCGA-EI-6512-01 11 5537465 5537465 T G UBQLNL Missense_Mutation p.Q69H 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6512-01 11 609001 609001 A G PHRF1 Missense_Mutation p.E1181G 0.09 deleterious(0.02) possibly_damaging(0.859) TCGA-EI-6512-01 11 70253451 70253451 C T CTTN Silent p.D16D 0.48 TCGA-EI-6512-01 11 78380660 78380660 G A TENM4 Missense_Mutation p.R2244C 0.15 deleterious(0) probably_damaging(0.995) TCGA-EI-6512-01 12 104390557 104390557 C T GLT8D2 Missense_Mutation p.D186N 0.69 tolerated(0.09) benign(0.382) TCGA-EI-6512-01 12 130015719 130015719 C A TMEM132D Missense_Mutation p.G334C 0.37 deleterious(0.01) probably_damaging(0.933) TCGA-EI-6512-01 12 132476773 132476773 A G EP400 Missense_Mutation p.E912G 0.10 unknown(0) TCGA-EI-6512-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.75 deleterious(0.04) possibly_damaging(0.506) TCGA-EI-6512-01 12 33592363 33592363 T C SYT10 Missense_Mutation p.E32G 0.36 deleterious(0) benign(0.081) TCGA-EI-6512-01 12 4479626 4479626 G A FGF23 Silent p.A213A 0.87 TCGA-EI-6512-01 12 6442972 6442979 CACACTCC - TNFRSF1A Frame_Shift_Del p.C84Rfs*52 0.19 TCGA-EI-6512-01 12 8376142 8376142 G A FAM90A1 Missense_Mutation p.P112L 0.27 tolerated(0.64) benign(0.001) TCGA-EI-6512-01 12 85450520 85450520 C T LRRIQ1 Missense_Mutation p.A650V 0.21 tolerated(0.42) benign(0.01) TCGA-EI-6512-01 13 103459817 103459817 A G BIVM-ERCC5 Missense_Mutation p.Y39C 0.18 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-EI-6512-01 13 20763484 20763484 C T GJB2 Silent p.L79L 0.40 TCGA-EI-6512-01 13 36229033 36229033 G A NBEA Missense_Mutation p.V2672I 0.57 deleterious(0.02) benign(0.115) TCGA-EI-6512-01 13 37269828 37269828 G A SERTM1 3'UTR 0.17 TCGA-EI-6512-01 13 41303463 41303463 T C MRPS31 3'UTR 0.46 TCGA-EI-6512-01 13 77852892 77852892 C T MYCBP2 Splice_Site p.X212_splice 0.14 TCGA-EI-6512-01 13 84454630 84454630 C T SLITRK1 Missense_Mutation p.S338N 0.19 tolerated(0.2) benign(0.001) TCGA-EI-6512-01 13 88327844 88327844 C A SLITRK5 Missense_Mutation p.N67K 0.29 deleterious(0.01) benign(0.109) TCGA-EI-6512-01 14 101350285 101350285 G T RTL1 Missense_Mutation p.R281S 0.44 tolerated(0.11) possibly_damaging(0.737) TCGA-EI-6512-01 14 102918872 102918872 C T TECPR2 Missense_Mutation p.A1183V 0.50 tolerated(0.08) benign(0.27) TCGA-EI-6512-01 14 104436884 104436884 G C TDRD9 Missense_Mutation p.E258Q 0.30 deleterious(0.02) probably_damaging(1) TCGA-EI-6512-01 14 23242854 23242856 CTC - SLC7A7 In_Frame_Del p.G500del 0.10 TCGA-EI-6512-01 14 34269601 34269601 C T NPAS3 Silent p.G696G 0.38 TCGA-EI-6512-01 14 35498433 35498433 C T SRP54 3'UTR 0.56 TCGA-EI-6512-01 14 66028130 66028130 C A FUT8 5'UTR 0.50 TCGA-EI-6512-01 14 70517819 70517819 C T SLC8A3 Silent p.T679T 0.40 TCGA-EI-6512-01 14 92563031 92563031 C T ATXN3 Missense_Mutation p.R59H 0.17 tolerated(0.08) benign(0.027) TCGA-EI-6512-01 15 20739824 20739824 C T GOLGA6L6 Silent p.T642T 0.12 TCGA-EI-6512-01 15 24921002 24921002 C T NPAP1 5'UTR 0.40 TCGA-EI-6512-01 15 91578563 91578563 C T AC068831.10 RNA 0.33 TCGA-EI-6512-01 16 48234294 48234294 C T ABCC11 Missense_Mutation p.D659N 0.39 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6512-01 16 65006929 65006929 C T CDH11 Missense_Mutation p.R423H 0.53 tolerated(0.17) benign(0.012) TCGA-EI-6512-01 16 72032228 72032228 G A PKD1L3 RNA 0.43 TCGA-EI-6512-01 17 1303428 1303428 C T YWHAE 5'UTR 0.23 TCGA-EI-6512-01 17 37571586 37571586 G A MED1 Missense_Mutation p.P435L 0.63 deleterious(0.01) benign(0.007) TCGA-EI-6512-01 17 39041192 39041192 C T KRT20 Silent p.A82A 0.51 TCGA-EI-6512-01 17 41063323 41063323 C T G6PC Silent p.V318V 0.25 TCGA-EI-6512-01 17 43531441 43531441 G A PLEKHM1 Missense_Mutation p.R593C 0.57 deleterious(0) probably_damaging(1) TCGA-EI-6512-01 17 44101580 44101581 GA - MAPT 3'UTR 0.52 TCGA-EI-6512-01 17 46628417 46628417 C T HOXB3 Missense_Mutation p.R192Q 0.29 deleterious(0.03) probably_damaging(0.948) TCGA-EI-6512-01 17 71344747 71344747 G A SDK2 Silent p.S2052S 0.44 TCGA-EI-6512-01 17 73150547 73150547 C T HN1 5'UTR 0.31 TCGA-EI-6512-01 17 7578517 7578517 G A TP53 Missense_Mutation p.A138V 0.68 deleterious(0.03) possibly_damaging(0.644) TCGA-EI-6512-01 17 76167781 76167781 T C SYNGR2 Intron 0.30 TCGA-EI-6512-01 18 48510838 48510838 C T ELAC1 Missense_Mutation p.A177V 0.67 deleterious(0) probably_damaging(0.998) TCGA-EI-6512-01 19 14938900 14938900 C T OR7A5 Missense_Mutation p.D52N 0.11 deleterious_low_confidence(0.01) benign(0.111) TCGA-EI-6512-01 19 24309304 24309304 A T ZNF254 Missense_Mutation p.N168Y 0.33 tolerated(0.06) benign(0.141) TCGA-EI-6512-01 19 30936569 30936569 C T ZNF536 Silent p.V700V 0.42 TCGA-EI-6512-01 19 31769253 31769253 G A TSHZ3 Silent p.D482D 0.37 TCGA-EI-6512-01 19 3759898 3759898 G A APBA3 Missense_Mutation p.P122L 0.35 tolerated_low_confidence(0.47) benign(0.004) TCGA-EI-6512-01 19 37676128 37676128 C G ZNF585B 3'UTR 0.39 TCGA-EI-6512-01 19 38937201 38937201 C T RYR1 Missense_Mutation p.R241C 0.40 probably_damaging(0.985) TCGA-EI-6512-01 19 41455037 41455037 C T AC092071.1 3'Flank 0.34 TCGA-EI-6512-01 19 42480634 42480634 G A ATP1A3 Silent p.T689T 0.42 TCGA-EI-6512-01 19 44223760 44223760 G A IRGC Silent p.S350S 0.30 TCGA-EI-6512-01 19 53086134 53086134 G A ZNF701 Silent p.E340E 0.47 TCGA-EI-6512-01 19 53855627 53855627 A T ZNF845 Missense_Mutation p.I567F 0.35 deleterious(0.05) benign(0.223) TCGA-EI-6512-01 19 53995356 53995356 C A ZNF813 3'UTR 0.56 TCGA-EI-6512-01 19 54755020 54755020 C T LILRB5 Intron 0.32 TCGA-EI-6512-01 19 55687114 55687114 G A SYT5 Missense_Mutation p.T168M 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6512-01 19 57175321 57175321 G T ZNF835 Silent p.R416R 0.26 TCGA-EI-6512-01 19 58437691 58437691 C T ZNF418 Missense_Mutation p.E620K 0.19 tolerated(0.09) probably_damaging(0.974) TCGA-EI-6512-01 19 58563981 58563981 G A ZSCAN1 Missense_Mutation p.A197T 0.38 tolerated(0.68) benign(0.007) TCGA-EI-6512-01 19 9091578 9091578 C A MUC16 Missense_Mutation p.L79F 0.40 unknown(0) TCGA-EI-6512-01 1 110586383 110586383 C T STRIP1 Silent p.P397P 0.30 TCGA-EI-6512-01 1 116609769 116609769 T G SLC22A15 3'UTR 0.22 TCGA-EI-6512-01 1 150598138 150598138 G A ENSA Silent p.L126L 0.43 TCGA-EI-6512-01 1 152326612 152326612 C T FLG2 Missense_Mutation p.G1217D 0.27 unknown(0) TCGA-EI-6512-01 1 159921549 159921549 G A SLAMF9 Nonsense_Mutation p.R258* 0.24 TCGA-EI-6512-01 1 164781342 164781342 C T PBX1 Missense_Mutation p.A318V 0.28 tolerated(0.46) benign(0.001) TCGA-EI-6512-01 1 16767304 16767304 C T NECAP2 Silent p.V16V 0.42 TCGA-EI-6512-01 1 168344799 168344799 G A MIR557 RNA 0.46 TCGA-EI-6512-01 1 175067568 175067568 G A TNN Silent p.V652V 0.46 TCGA-EI-6512-01 1 185958719 185958719 G T HMCN1 Missense_Mutation p.V1050F 0.20 possibly_damaging(0.724) TCGA-EI-6512-01 1 248367150 248367150 C T OR2M3 Missense_Mutation p.R261W 0.23 deleterious(0.04) benign(0.005) TCGA-EI-6512-01 1 33998708 33998708 G A CSMD2 Silent p.S3227S 0.24 TCGA-EI-6512-01 1 4772466 4772466 A C AJAP1 Missense_Mutation p.E179A 0.26 tolerated(1) possibly_damaging(0.908) TCGA-EI-6512-01 1 52805801 52805801 C T ZFYVE9 Silent p.V1279V 0.46 TCGA-EI-6512-01 1 67160132 67160132 C T SGIP1 Intron 0.29 TCGA-EI-6512-01 1 892534 892534 G A NOC2L Missense_Mutation p.S100L 0.31 deleterious(0.05) probably_damaging(0.921) TCGA-EI-6512-01 1 89270197 89270197 C A PKN2 Missense_Mutation p.Q469K 0.23 deleterious(0.04) possibly_damaging(0.566) TCGA-EI-6512-01 1 91182324 91182324 T A BARHL2 Missense_Mutation p.L143F 0.45 tolerated(0.05) unknown(0) TCGA-EI-6512-01 20 257759 257759 G A C20orf96 Missense_Mutation p.R251C 0.69 tolerated(0.19) benign(0.198) TCGA-EI-6512-01 20 30584481 30584481 G A XKR7 Missense_Mutation p.A321T 0.21 deleterious(0) probably_damaging(0.993) TCGA-EI-6512-01 20 31876618 31876618 C T BPIFB1 Missense_Mutation p.R63W 0.09 deleterious(0) probably_damaging(0.912) TCGA-EI-6512-01 20 34021836 34021836 C T GDF5 Silent p.E459E 0.71 TCGA-EI-6512-01 20 40045395 40045395 C T CHD6 Missense_Mutation p.V2107M 0.21 deleterious(0) possibly_damaging(0.657) TCGA-EI-6512-01 20 44574847 44574847 C T PCIF1 Silent p.F479F 0.10 TCGA-EI-6512-01 20 60894807 60894807 G A LAMA5 Silent p.T2268T 0.11 TCGA-EI-6512-01 20 61340810 61340810 C T NTSR1 Missense_Mutation p.T84M 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6512-01 21 10996087 10996087 G T TPTE RNA 0.09 TCGA-EI-6512-01 21 31797958 31797958 A T KRTAP13-3 Silent p.S91S 0.71 TCGA-EI-6512-01 21 34635599 34635599 A C IFNAR2 Missense_Mutation p.M448L 0.59 tolerated(0.4) benign(0.002) TCGA-EI-6512-01 21 35191628 35191628 G T ITSN1 Splice_Site p.X1006_splice 0.65 TCGA-EI-6512-01 22 22664176 22664176 C A BMS1P20 RNA 0.15 TCGA-EI-6512-01 22 41980566 41980566 C T PMM1 Missense_Mutation p.V83M 0.08 deleterious(0.02) possibly_damaging(0.846) TCGA-EI-6512-01 22 42071023 42071023 C T NHP2L1 Missense_Mutation p.A101T 0.17 deleterious(0.04) benign(0.183) TCGA-EI-6512-01 22 42280875 42280875 G T SREBF2 Missense_Mutation p.D690Y 0.23 deleterious(0.01) possibly_damaging(0.773) TCGA-EI-6512-01 2 109380837 109380837 T C RANBP2 Missense_Mutation p.L1281P 0.09 deleterious(0) probably_damaging(0.988) TCGA-EI-6512-01 2 145274875 145274875 G A ZEB2 Missense_Mutation p.R15C 0.22 deleterious(0) benign(0.265) TCGA-EI-6512-01 2 149240922 149240922 C A MBD5 Missense_Mutation p.S921Y 0.30 deleterious(0) unknown(0) TCGA-EI-6512-01 2 149837956 149837956 G T KIF5C Missense_Mutation p.V484L 0.24 tolerated(0.17) benign(0.325) TCGA-EI-6512-01 2 163302595 163302595 C A KCNH7 Missense_Mutation p.W496L 0.11 deleterious(0) probably_damaging(1) TCGA-EI-6512-01 2 173662259 173662259 G A RAPGEF4 Missense_Mutation p.R72H 0.37 tolerated(0.16) probably_damaging(0.944) TCGA-EI-6512-01 2 210786237 210786237 C G UNC80 Missense_Mutation p.A1720G 0.68 possibly_damaging(0.877) TCGA-EI-6512-01 3 101520629 101520629 G A NXPE3 Missense_Mutation p.R215H 0.27 deleterious(0.03) probably_damaging(0.919) TCGA-EI-6512-01 3 129137109 129137109 C T EFCAB12 Silent p.A223A 0.27 TCGA-EI-6512-01 3 133335718 133335718 G A TOPBP1 Nonsense_Mutation p.Q1271* 0.43 TCGA-EI-6512-01 3 142145627 142145628 AG - XRN1 Frame_Shift_Del p.L122Sfs*7 0.19 TCGA-EI-6512-01 3 151090372 151090372 A T MED12L Missense_Mutation p.N1193Y 0.23 deleterious(0.04) benign(0.189) TCGA-EI-6512-01 3 173998882 173998882 T A NLGN1 Missense_Mutation p.L754H 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EI-6512-01 3 183515804 183515804 G C YEATS2 Missense_Mutation p.G1064A 0.25 tolerated(0.1) possibly_damaging(0.622) TCGA-EI-6512-01 3 35780862 35780862 G A ARPP21 Silent p.S567S 0.28 TCGA-EI-6512-01 3 3888049 3888049 C T LRRN1 Missense_Mutation p.P575L 0.09 deleterious(0.04) possibly_damaging(0.728) TCGA-EI-6512-01 3 47046044 47046044 G A NBEAL2 Silent p.A2086A 0.21 TCGA-EI-6512-01 4 113578427 113578427 A C LARP7 Silent p.R572R 0.26 TCGA-EI-6512-01 4 126412465 126412465 G T FAT4 Missense_Mutation p.A4830S 0.56 probably_damaging(0.993) TCGA-EI-6512-01 4 140651623 140651623 G A MAML3 Missense_Mutation p.R760W 0.50 probably_damaging(0.958) TCGA-EI-6512-01 4 158283990 158283990 G A GRIA2 Missense_Mutation p.V816I 0.44 tolerated(0.65) probably_damaging(0.998) TCGA-EI-6512-01 4 21699032 21699032 C A KCNIP4 Intron 0.40 TCGA-EI-6512-01 4 69093561 69093561 G T TMPRSS11B 3'UTR 0.18 TCGA-EI-6512-01 4 71509458 71509458 C A ENAM Missense_Mutation p.A772D 0.23 tolerated(0.16) benign(0.099) TCGA-EI-6512-01 4 72215633 72215633 A G SLC4A4 Missense_Mutation p.I132V 0.17 tolerated(0.41) benign(0.014) TCGA-EI-6512-01 4 88995974 88995974 C T PKD2 Nonsense_Mutation p.R845* 0.26 TCGA-EI-6512-01 5 11159760 11159760 G T CTNND2 Nonsense_Mutation p.S696* 0.23 TCGA-EI-6512-01 5 112173560 112173560 C T APC Nonsense_Mutation p.Q757* 0.29 TCGA-EI-6512-01 5 112176000 112176000 A - APC Frame_Shift_Del p.D1570Vfs*6 0.30 TCGA-EI-6512-01 5 140562552 140562552 C A PCDHB16 Missense_Mutation p.L140I 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.609) TCGA-EI-6512-01 5 150921910 150921910 C T FAT2 Silent p.A2926A 0.17 TCGA-EI-6512-01 5 150924083 150924083 C T FAT2 Missense_Mutation p.R2202Q 0.23 probably_damaging(0.996) TCGA-EI-6512-01 5 17275457 17275457 G A BASP1 Silent p.A44A 0.36 TCGA-EI-6512-01 5 34004803 34004803 G A AMACR Missense_Mutation p.P143L 0.50 deleterious(0.01) probably_damaging(0.967) TCGA-EI-6512-01 5 67589573 67589617 GGGAAAAAATTACATGAATATAACACTCAGTTTCAAGAAAAAAGT - PIK3R1 In_Frame_Del p.G446_S460del 0.33 TCGA-EI-6512-01 5 70819784 70819784 C T BDP1 Silent p.N1802N 0.37 TCGA-EI-6512-01 5 89949320 89949320 C A GPR98 Missense_Mutation p.T1310N 0.15 benign(0.002) TCGA-EI-6512-01 6 128134339 128134339 C A THEMIS Nonsense_Mutation p.E483* 0.74 TCGA-EI-6512-01 6 13979609 13979609 C T RNF182 3'UTR 0.74 TCGA-EI-6512-01 6 27420223 27420223 G A ZNF184 Missense_Mutation p.T372I 0.19 tolerated(0.08) probably_damaging(0.989) TCGA-EI-6512-01 6 29012859 29012859 C T OR2W1 Missense_Mutation p.A32T 0.79 tolerated(0.17) benign(0.002) TCGA-EI-6512-01 6 34950944 34950944 G A ANKS1A Missense_Mutation p.R288Q 0.75 tolerated(0.25) benign(0.003) TCGA-EI-6512-01 6 56476323 56476324 - A DST Frame_Shift_Ins p.L1173Ffs*11 0.33 TCGA-EI-6512-01 7 100420207 100420207 C T EPHB4 Missense_Mutation p.R165H 0.38 deleterious(0.03) probably_damaging(0.991) TCGA-EI-6512-01 7 2686577 2686577 C T TTYH3 Missense_Mutation p.R72W 0.91 deleterious(0) possibly_damaging(0.883) TCGA-EI-6512-01 7 81372193 81372193 C A HGF Intron 0.17 TCGA-EI-6512-01 7 81634784 81634784 G T CACNA2D1 Silent p.I515I 0.32 TCGA-EI-6512-01 8 143694886 143694886 C G ARC Silent p.P249P 0.44 TCGA-EI-6512-01 8 143994273 143994273 G T CYP11B2 Silent p.R384R 0.16 TCGA-EI-6512-01 8 144733331 144733331 C T ZNF623 Missense_Mutation p.P430L 0.18 deleterious(0.03) probably_damaging(0.996) TCGA-EI-6512-01 8 86053640 86053640 G T LRRCC1 Missense_Mutation p.S955I 0.39 tolerated(0.06) benign(0.066) TCGA-EI-6512-01 9 136521548 136521548 G A DBH Intron 0.64 TCGA-EI-6512-01 9 21202202 21202202 G T IFNA7 5'UTR 0.26 TCGA-EI-6512-01 9 22447072 22447072 G A DMRTA1 Missense_Mutation p.R3Q 0.18 tolerated_low_confidence(1) benign(0.001) TCGA-EI-6512-01 9 86905134 86905134 C T SLC28A3 Missense_Mutation p.A362T 0.41 deleterious(0.04) possibly_damaging(0.668) TCGA-EI-6512-01 X 120182397 120182397 G T GLUD2 Missense_Mutation p.A287S 0.65 tolerated(0.26) benign(0.011) TCGA-EI-6512-01 X 122561805 122561805 C T GRIA3 Missense_Mutation p.R631C 0.13 deleterious(0) probably_damaging(1) TCGA-EI-6512-01 X 127185486 127185486 G A ACTRT1 Missense_Mutation p.R234W 0.70 deleterious(0) possibly_damaging(0.476) TCGA-EI-6512-01 X 151896300 151896300 C G MAGEA12 3'Flank 0.16 TCGA-EI-6512-01 X 152243367 152243367 C T PNMA6C 3'UTR 0.32 TCGA-EI-6512-01 X 153046988 153046988 C T SRPK3 Silent p.D73D 0.16 TCGA-EI-6512-01 X 30327110 30327110 C T NR0B1 Missense_Mutation p.R124Q 0.15 tolerated_low_confidence(0.36) benign(0.01) TCGA-EI-6512-01 X 47500710 47500710 C T ELK1 Missense_Mutation p.R44Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-EI-6512-01 X 48214165 48214165 G A SSX3 Missense_Mutation p.A29V 0.13 deleterious(0) possibly_damaging(0.616) TCGA-EI-6512-01 X 5821173 5821173 C T NLGN4X Missense_Mutation p.D516N 0.15 deleterious(0) probably_damaging(0.998) TCGA-EI-6512-01 X 63412110 63412110 G A AMER1 Nonsense_Mutation p.R353* 0.65 TCGA-EI-6512-01 X 70339712 70339712 G A MED12 Silent p.T127T 0.22 TCGA-EI-6513-01 10 15646320 15646320 G A ITGA8 Missense_Mutation p.H669Y 0.38 tolerated(1) benign(0.02) TCGA-EI-6513-01 10 18242216 18242216 G A SLC39A12 Missense_Mutation p.R4Q 0.34 tolerated_low_confidence(0.21) benign(0.002) TCGA-EI-6513-01 10 35500676 35500676 T A CREM Missense_Mutation p.L283H 0.44 deleterious(0) probably_damaging(1) TCGA-EI-6513-01 10 73767917 73767917 C T CHST3 Silent p.R376R 0.43 TCGA-EI-6513-01 10 75258685 75258685 G A USP54 Missense_Mutation p.S1586F 0.47 deleterious_low_confidence(0) benign(0.216) TCGA-EI-6513-01 10 97143838 97143838 C G SORBS1 Missense_Mutation p.S481T 0.62 deleterious(0) benign(0.298) TCGA-EI-6513-01 11 106647236 106647236 T C GUCY1A2 Missense_Mutation p.I589V 0.42 tolerated(0.05) benign(0.076) TCGA-EI-6513-01 11 123900676 123900676 T C OR10G8 Missense_Mutation p.V116A 0.40 deleterious(0.03) possibly_damaging(0.701) TCGA-EI-6513-01 11 128332291 128332291 C T ETS1 Missense_Mutation p.A475T 0.40 tolerated(0.14) probably_damaging(0.982) TCGA-EI-6513-01 11 3383081 3383081 G A ZNF195 Missense_Mutation p.L89F 0.60 tolerated(0.13) possibly_damaging(0.587) TCGA-EI-6513-01 11 46886063 46886063 C T LRP4 Missense_Mutation p.A1727T 0.35 tolerated(0.08) benign(0.026) TCGA-EI-6513-01 11 64898947 64898947 A G SYVN1 Missense_Mutation p.F218L 0.39 tolerated(0.4) benign(0.008) TCGA-EI-6513-01 11 71276855 71276855 T C KRTAP5-10 Silent p.C74C 0.35 TCGA-EI-6513-01 12 107126712 107126712 A G RFX4 Silent p.R503R 0.15 TCGA-EI-6513-01 12 110017697 110017697 G A MVK Missense_Mutation p.R106H 0.32 tolerated(0.25) benign(0) TCGA-EI-6513-01 12 110841331 110841331 C A ANAPC7 Splice_Site p.X68_splice 0.31 TCGA-EI-6513-01 12 119624836 119624836 A T HSPB8 Missense_Mutation p.H125L 0.37 deleterious(0) probably_damaging(0.979) TCGA-EI-6513-01 12 51675271 51675271 G C BIN2 3'UTR 0.41 TCGA-EI-6513-01 12 75444468 75444468 A C KCNC2 Silent p.G439G 0.38 TCGA-EI-6513-01 12 7559317 7559317 A G CD163L1 Missense_Mutation p.C300R 0.45 deleterious(0) probably_damaging(0.951) TCGA-EI-6513-01 12 75601408 75601408 C T KCNC2 Missense_Mutation p.R119H 0.49 deleterious(0) probably_damaging(1) TCGA-EI-6513-01 12 7647949 7647949 G A CD163 Missense_Mutation p.A383V 0.43 deleterious(0.03) probably_damaging(0.986) TCGA-EI-6513-01 13 101755671 101755671 C T NALCN Missense_Mutation p.C970Y 0.56 tolerated(0.14) possibly_damaging(0.463) TCGA-EI-6513-01 13 114774910 114774910 A C RASA3 Missense_Mutation p.F541V 0.26 tolerated(0.13) probably_damaging(0.985) TCGA-EI-6513-01 13 114783675 114783675 C T RASA3 Silent p.Q332Q 0.30 TCGA-EI-6513-01 13 28155828 28155830 TTG - LNX2 In_Frame_Del p.T4del 0.10 TCGA-EI-6513-01 13 32972342 32972342 C A BRCA2 Nonsense_Mutation p.S3231* 0.39 TCGA-EI-6513-01 13 35751234 35751234 G A NBEA Silent p.R1552R 0.24 TCGA-EI-6513-01 13 36878522 36878522 C A SPG20 Missense_Mutation p.A661S 0.19 tolerated_low_confidence(0.06) unknown(0) TCGA-EI-6513-01 13 41949972 41949972 A G NAA16 3'UTR 0.72 TCGA-EI-6513-01 13 53277937 53277937 T G LECT1 Missense_Mutation p.E266D 0.31 tolerated(0.09) possibly_damaging(0.675) TCGA-EI-6513-01 13 77748566 77748566 T A MYCBP2 Missense_Mutation p.D1806V 0.34 probably_damaging(0.999) TCGA-EI-6513-01 13 78493950 78493950 A C EDNRB 5'Flank 0.40 TCGA-EI-6513-01 14 24798736 24798736 T C ADCY4 Silent p.R407R 0.58 TCGA-EI-6513-01 14 38723797 38723797 A T CLEC14A Silent p.G477G 0.67 TCGA-EI-6513-01 14 92047439 92047439 C T CATSPERB Missense_Mutation p.E1049K 0.72 deleterious(0.01) benign(0.271) TCGA-EI-6513-01 15 35224576 35224576 A T AQR Silent p.V281V 0.86 TCGA-EI-6513-01 15 78575743 78575743 C G WDR61 3'UTR 0.82 TCGA-EI-6513-01 15 81648797 81648797 G C TMC3 Missense_Mutation p.N294K 0.77 deleterious(0.02) possibly_damaging(0.889) TCGA-EI-6513-01 16 10788468 10788468 C T TEKT5 Missense_Mutation p.R88H 0.54 deleterious(0) probably_damaging(0.991) TCGA-EI-6513-01 16 15680725 15680725 C A C16orf45 3'UTR 0.31 TCGA-EI-6513-01 16 3640479 3640479 A T SLX4 Missense_Mutation p.S1054T 0.35 tolerated(0.42) benign(0.064) TCGA-EI-6513-01 16 67904922 67904922 G A NUTF2 3'UTR 0.22 TCGA-EI-6513-01 16 68055553 68055553 G A DDX28 Missense_Mutation p.A518V 0.39 deleterious(0) probably_damaging(0.995) TCGA-EI-6513-01 16 69400714 69400714 G A TERF2 Missense_Mutation p.P404S 0.37 tolerated(0.31) benign(0.401) TCGA-EI-6513-01 16 71004463 71004463 T A HYDIN Missense_Mutation p.Y1860F 0.33 probably_damaging(0.953) TCGA-EI-6513-01 16 71004464 71004464 A T HYDIN Missense_Mutation p.Y1860N 0.33 probably_damaging(0.986) TCGA-EI-6513-01 16 71004465 71004465 A T HYDIN Missense_Mutation p.F1859L 0.33 probably_damaging(0.916) TCGA-EI-6513-01 16 75271226 75271226 C T BCAR1 Missense_Mutation p.R263H 0.10 deleterious(0) probably_damaging(0.975) TCGA-EI-6513-01 17 18331780 18331780 T G KRT17P2 RNA 0.69 TCGA-EI-6513-01 17 40451868 40451868 G A STAT5A Missense_Mutation p.R217H 0.37 tolerated(0.09) benign(0.005) TCGA-EI-6513-01 17 48545984 48545984 G A CHAD Missense_Mutation p.P64L 0.08 tolerated(0.52) probably_damaging(0.95) TCGA-EI-6513-01 17 50235251 50235251 G T CA10 5'UTR 0.36 TCGA-EI-6513-01 17 60042493 60042493 G C MED13 Missense_Mutation p.S1573C 0.53 tolerated(0.05) benign(0.241) TCGA-EI-6513-01 17 72588407 72588407 A T C17orf77 Silent p.P74P 0.40 TCGA-EI-6513-01 17 73919712 73919712 C T FBF1 Missense_Mutation p.A312T 0.28 tolerated(0.17) benign(0.034) TCGA-EI-6513-01 17 80050420 80050420 C G FASN Missense_Mutation p.A314P 0.33 tolerated(0.23) benign(0.013) TCGA-EI-6513-01 18 14850341 14850341 A C ANKRD30B Missense_Mutation p.Q1056P 0.73 tolerated(0.1) probably_damaging(0.923) TCGA-EI-6513-01 18 30926200 30926200 T G CCDC178 Missense_Mutation p.Q211H 0.69 deleterious(0) probably_damaging(0.94) TCGA-EI-6513-01 19 13397439 13397439 A C CACNA1A Missense_Mutation p.L1144R 0.34 probably_damaging(0.955) TCGA-EI-6513-01 19 18967753 18967753 G A UPF1 Missense_Mutation p.R631H 0.18 tolerated(0.12) benign(0.026) TCGA-EI-6513-01 19 41352794 41352794 T A CYP2A6 Missense_Mutation p.I273F 0.43 probably_damaging(0.925) TCGA-EI-6513-01 19 41889963 41889963 A G TMEM91 3'UTR 0.88 TCGA-EI-6513-01 19 42814224 42814224 G A PRR19 Missense_Mutation p.R163Q 0.38 tolerated(0.08) possibly_damaging(0.889) TCGA-EI-6513-01 19 44612188 44612188 A G ZNF224 Silent p.K625K 0.36 TCGA-EI-6513-01 19 48607879 48607879 C T PLA2G4C Missense_Mutation p.V85I 0.08 tolerated(0.09) possibly_damaging(0.566) TCGA-EI-6513-01 19 56477725 56477725 G A NLRP8 Missense_Mutation p.R787Q 0.57 tolerated(1) benign(0.003) TCGA-EI-6513-01 19 5651075 5651075 T C SAFB Missense_Mutation p.Y429H 0.76 tolerated(0.14) probably_damaging(0.997) TCGA-EI-6513-01 19 7696508 7696508 T A PCP2 3'UTR 0.40 TCGA-EI-6513-01 19 7696509 7696509 C T PCP2 3'UTR 0.40 TCGA-EI-6513-01 19 7754102 7754102 G A FCER2 Missense_Mutation p.P315S 0.47 tolerated_low_confidence(0.51) benign(0.014) TCGA-EI-6513-01 1 110212094 110212094 C T GSTM2 Silent p.C87C 0.38 TCGA-EI-6513-01 1 115282510 115282510 A G CSDE1 Missense_Mutation p.M47T 0.26 tolerated(0.24) possibly_damaging(0.793) TCGA-EI-6513-01 1 147380179 147380179 C T GJA8 Missense_Mutation p.R33W 0.49 deleterious(0) probably_damaging(1) TCGA-EI-6513-01 1 149399187 149399187 C T HIST2H3PS2 3'Flank 0.34 TCGA-EI-6513-01 1 151774736 151774736 C A LINGO4 Missense_Mutation p.D149Y 0.31 deleterious(0) probably_damaging(0.998) TCGA-EI-6513-01 1 155582915 155582915 G A MSTO1 Missense_Mutation p.G392R 0.36 tolerated(0.26) benign(0.003) TCGA-EI-6513-01 1 16534527 16534527 C A ARHGEF19 Missense_Mutation p.M202I 0.41 tolerated_low_confidence(0.36) benign(0.085) TCGA-EI-6513-01 1 181024587 181024587 A G MR1 3'UTR 0.16 TCGA-EI-6513-01 1 196799750 196799750 T A CFHR1 Missense_Mutation p.L243H 0.13 deleterious(0) probably_damaging(0.999) TCGA-EI-6513-01 1 198678899 198678899 T C PTPRC Missense_Mutation p.Y373H 0.43 deleterious(0.01) probably_damaging(0.971) TCGA-EI-6513-01 1 201184673 201184673 C A IGFN1 Missense_Mutation p.P3001H 0.43 probably_damaging(0.996) TCGA-EI-6513-01 1 20659274 20659274 A C VWA5B1 Missense_Mutation p.K530Q 0.08 deleterious(0) possibly_damaging(0.889) TCGA-EI-6513-01 1 234593436 234593436 G A TARBP1 Nonsense_Mutation p.R567* 0.04 TCGA-EI-6513-01 1 32201083 32201083 C T BAI2 Intron 0.50 TCGA-EI-6513-01 1 32951035 32951035 G T ZBTB8B 3'UTR 0.36 TCGA-EI-6513-01 1 47904519 47904519 C T FOXD2 Missense_Mutation p.H238Y 0.44 tolerated_low_confidence(0.15) unknown(0) TCGA-EI-6513-01 1 84403662 84403662 T C TTLL7 Missense_Mutation p.N254S 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6513-01 1 92200510 92200510 C T TGFBR3 Missense_Mutation p.E131K 0.36 tolerated(0.57) benign(0.003) TCGA-EI-6513-01 1 94998708 94998708 C A F3 Missense_Mutation p.D177Y 0.43 deleterious(0) probably_damaging(0.924) TCGA-EI-6513-01 20 16359643 16359643 T C KIF16B Missense_Mutation p.R1002G 0.49 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-EI-6513-01 20 20616218 20616218 A C RALGAPA2 Silent p.T283T 0.43 TCGA-EI-6513-01 20 31811618 31811618 T G BPIFA3 Missense_Mutation p.I43M 0.59 deleterious(0.02) possibly_damaging(0.901) TCGA-EI-6513-01 20 34099425 34099425 C A CEP250 Missense_Mutation p.S2433R 0.17 possibly_damaging(0.742) TCGA-EI-6513-01 20 36769692 36769692 T C TGM2 Missense_Mutation p.K364R 0.24 tolerated(0.19) benign(0.006) TCGA-EI-6513-01 20 45839524 45839524 T G ZMYND8 Missense_Mutation p.K1150T 0.22 tolerated_low_confidence(0.06) possibly_damaging(0.864) TCGA-EI-6513-01 20 57415378 57415378 G A RP4-806M20.3 5'Flank 0.25 TCGA-EI-6513-01 20 61340754 61340754 G A NTSR1 Silent p.L65L 0.22 TCGA-EI-6513-01 21 19165770 19165770 G A C21orf91 Nonsense_Mutation p.R286* 0.07 TCGA-EI-6513-01 21 32253363 32253363 T G KRTAP11-1 Silent p.R161R 0.29 TCGA-EI-6513-01 22 26839212 26839212 C T ASPHD2 3'UTR 0.40 TCGA-EI-6513-01 22 35947710 35947710 C T RASD2 Silent p.H144H 0.40 TCGA-EI-6513-01 22 36661293 36661293 A T APOL1 Missense_Mutation p.R153S 0.33 tolerated(0.06) possibly_damaging(0.794) TCGA-EI-6513-01 2 113780158 113780159 - A IL36B 3'UTR 0.29 TCGA-EI-6513-01 2 120221814 120221814 C T SCTR Missense_Mutation p.R174H 0.20 deleterious(0.01) probably_damaging(1) TCGA-EI-6513-01 2 120639684 120639686 CTT - PTPN4 In_Frame_Del p.S143del 0.12 TCGA-EI-6513-01 2 122493322 122493322 T G NIFK Missense_Mutation p.K37T 0.45 tolerated(0.27) benign(0.027) TCGA-EI-6513-01 2 1271318 1271318 C T SNTG2 Missense_Mutation p.T420M 0.33 deleterious(0.03) benign(0.042) TCGA-EI-6513-01 2 139316672 139316672 A G SPOPL Silent p.A187A 0.36 TCGA-EI-6513-01 2 143798028 143798028 G A KYNU Missense_Mutation p.R358Q 0.42 deleterious(0.03) probably_damaging(0.967) TCGA-EI-6513-01 2 149227927 149227927 T C MBD5 Silent p.N805N 0.49 TCGA-EI-6513-01 2 149542491 149542491 T A EPC2 Missense_Mutation p.L758I 0.38 deleterious(0.02) benign(0.023) TCGA-EI-6513-01 2 179592568 179592568 T A TTN Missense_Mutation p.K6579N 0.43 TCGA-EI-6513-01 2 182396388 182396388 G T ITGA4 Missense_Mutation p.C890F 0.39 deleterious(0) probably_damaging(0.997) TCGA-EI-6513-01 2 196681375 196681375 C A DNAH7 Missense_Mutation p.E3246D 0.40 tolerated(0.16) benign(0.049) TCGA-EI-6513-01 2 20845155 20845155 C T HS1BP3 Missense_Mutation p.R48H 0.46 deleterious(0.04) probably_damaging(0.953) TCGA-EI-6513-01 2 233898908 233898908 C T NEU2 Missense_Mutation p.T95M 0.34 deleterious(0) possibly_damaging(0.865) TCGA-EI-6513-01 2 234401851 234401851 A C USP40 Intron 0.60 TCGA-EI-6513-01 2 241459898 241459898 G A ANKMY1 Missense_Mutation p.P540S 0.37 deleterious(0.03) possibly_damaging(0.901) TCGA-EI-6513-01 2 39201005 39201005 G A ARHGEF33 3'UTR 0.43 TCGA-EI-6513-01 2 5840779 5840779 T A SOX11 3'UTR 0.40 TCGA-EI-6513-01 2 61149594 61149594 G A REL Missense_Mutation p.S595N 0.32 tolerated_low_confidence(0.61) possibly_damaging(0.587) TCGA-EI-6513-01 2 66798544 66798544 G A MEIS1 3'UTR 0.54 TCGA-EI-6513-01 2 71592792 71592792 G C ZNF638 Missense_Mutation p.E651Q 0.40 tolerated(0.14) possibly_damaging(0.782) TCGA-EI-6513-01 2 96993244 96993244 C A ITPRIPL1 Missense_Mutation p.P300H 0.33 tolerated(0.23) benign(0) TCGA-EI-6513-01 3 138121336 138121336 G A MRAS 3'UTR 0.23 TCGA-EI-6513-01 3 159707017 159707017 T C IL12A Intron 0.12 TCGA-EI-6513-01 3 186761083 186761083 C G ST6GAL1 Missense_Mutation p.L198V 0.41 possibly_damaging(0.457) TCGA-EI-6513-01 3 48936152 48936152 A G SLC25A20 Missense_Mutation p.F26L 0.09 tolerated(1) benign(0.006) TCGA-EI-6513-01 3 52257162 52257162 C G TLR9 Silent p.L544L 0.59 TCGA-EI-6513-01 3 93733774 93733774 T G STX19 Missense_Mutation p.K114Q 0.45 tolerated(0.11) possibly_damaging(0.566) TCGA-EI-6513-01 4 13605419 13605421 CTT - BOD1L1 In_Frame_Del p.K1035del 0.74 TCGA-EI-6513-01 4 25262159 25262159 T G PI4K2B Missense_Mutation p.D308E 0.63 deleterious(0.01) benign(0.393) TCGA-EI-6513-01 4 52890006 52890006 G A SGCB 3'UTR 0.60 TCGA-EI-6513-01 5 10280687 10280687 T G CMBL Missense_Mutation p.T206P 0.38 deleterious(0) probably_damaging(0.934) TCGA-EI-6513-01 5 112173830 112173831 - A APC Frame_Shift_Ins p.D849Rfs*2 0.53 TCGA-EI-6513-01 5 122515999 122515999 C G PRDM6 Missense_Mutation p.T552S 0.82 tolerated(0.31) probably_damaging(0.992) TCGA-EI-6513-01 5 135510238 135510238 C A SMAD5 Missense_Mutation p.L391I 0.62 tolerated(0.06) benign(0.058) TCGA-EI-6513-01 5 140262268 140262268 C T PCDHA13 Nonsense_Mutation p.R139* 0.34 TCGA-EI-6513-01 5 140595215 140595215 A G PCDHB13 Missense_Mutation p.N507S 0.41 deleterious_low_confidence(0.01) benign(0.416) TCGA-EI-6513-01 5 140615769 140615769 G A PCDHB18 RNA 0.53 TCGA-EI-6513-01 5 164028062 164028062 G A CTC-340A15.2 RNA 0.46 TCGA-EI-6513-01 5 180625206 180625206 C G TRIM7 Missense_Mutation p.G334A 0.32 tolerated(0.7) benign(0.006) TCGA-EI-6513-01 5 33881405 33881405 A C ADAMTS12 Missense_Mutation p.F103C 0.39 tolerated(0.18) probably_damaging(0.935) TCGA-EI-6513-01 5 45303717 45303717 A T HCN1 Missense_Mutation p.D534E 0.50 deleterious(0.01) probably_damaging(0.938) TCGA-EI-6513-01 6 116967057 116967057 G T ZUFSP Missense_Mutation p.N503K 0.37 deleterious(0) probably_damaging(0.913) TCGA-EI-6513-01 6 152510428 152510428 C T SYNE1 Missense_Mutation p.V7754I 0.41 benign(0) TCGA-EI-6513-01 6 152737663 152737663 T C SYNE1 Missense_Mutation p.Q1970R 0.35 benign(0.036) TCGA-EI-6513-01 6 29323012 29323012 A G OR5V1 Missense_Mutation p.Y321H 0.50 benign(0.403) TCGA-EI-6513-01 6 32827345 32827345 A T PSMB9 3'UTR 0.45 TCGA-EI-6513-01 6 49754293 49754293 T G PGK2 Missense_Mutation p.N203T 0.43 tolerated(0.08) benign(0.035) TCGA-EI-6513-01 6 51776699 51776699 C T PKHD1 Missense_Mutation p.A2130T 0.49 deleterious(0.04) possibly_damaging(0.616) TCGA-EI-6513-01 6 79664656 79664656 G A PHIP Missense_Mutation p.R1310C 0.38 deleterious(0) probably_damaging(0.993) TCGA-EI-6513-01 7 114330059 114330059 C A FOXP2 3'UTR 0.52 TCGA-EI-6513-01 7 12375767 12375767 G A VWDE Missense_Mutation p.P1552S 0.19 deleterious(0.04) possibly_damaging(0.838) TCGA-EI-6513-01 7 141420755 141420755 T A WEE2 Missense_Mutation p.V260D 0.43 deleterious(0) probably_damaging(0.997) TCGA-EI-6513-01 7 149521731 149521731 C T SSPO RNA 0.54 TCGA-EI-6513-01 7 150390099 150390099 G A GIMAP2 Missense_Mutation p.S242N 0.42 tolerated(0.38) benign(0) TCGA-EI-6513-01 7 18914213 18914213 G T HDAC9 Missense_Mutation p.A933S 0.21 tolerated(0.05) probably_damaging(0.994) TCGA-EI-6513-01 7 30739613 30739613 C T CRHR2 Missense_Mutation p.V13I 0.24 tolerated_low_confidence(0.5) benign(0.002) TCGA-EI-6513-01 7 31132329 31132329 C A ADCYAP1R1 Silent p.G342G 0.19 TCGA-EI-6513-01 7 35271146 35271146 C T TBX20 Missense_Mutation p.R287Q 0.24 deleterious(0) probably_damaging(0.994) TCGA-EI-6513-01 7 4308188 4308188 G A SDK1 3'UTR 0.17 TCGA-EI-6513-01 7 43580778 43580778 C T HECW1 Missense_Mutation p.R1346C 0.62 deleterious(0) probably_damaging(0.996) TCGA-EI-6513-01 7 5352490 5352490 A G TNRC18 Missense_Mutation p.S2678P 0.20 unknown(0) TCGA-EI-6513-01 7 57188322 57188322 T G ZNF479 Missense_Mutation p.K267T 0.21 deleterious(0.02) possibly_damaging(0.705) TCGA-EI-6513-01 7 88964555 88964556 - A ZNF804B Frame_Shift_Ins p.R755Tfs*13 0.27 TCGA-EI-6513-01 7 92735303 92735303 C T SAMD9 Silent p.L36L 0.37 TCGA-EI-6513-01 7 92735304 92735304 A C SAMD9 Missense_Mutation p.L36W 0.37 deleterious(0) probably_damaging(1) TCGA-EI-6513-01 7 92735306 92735306 A T SAMD9 Silent p.I35I 0.38 TCGA-EI-6513-01 8 113651017 113651017 A T CSMD3 Missense_Mutation p.I1145N 0.37 deleterious(0) probably_damaging(0.974) TCGA-EI-6513-01 8 113662563 113662563 G C CSMD3 Missense_Mutation p.T1007R 0.07 deleterious(0.02) possibly_damaging(0.766) TCGA-EI-6513-01 8 119964072 119964072 G T TNFRSF11B 5'UTR 0.42 TCGA-EI-6513-01 8 125565267 125565267 G A MTSS1 Missense_Mutation p.T745M 0.62 tolerated(0.23) benign(0.067) TCGA-EI-6513-01 8 13357063 13357063 G T DLC1 Missense_Mutation p.A173E 0.69 tolerated_low_confidence(1) benign(0.031) TCGA-EI-6513-01 8 145621845 145621845 G A CPSF1 Missense_Mutation p.R932C 0.86 deleterious(0) probably_damaging(0.985) TCGA-EI-6513-01 8 22478957 22478957 A G BIN3 Missense_Mutation p.L247P 0.10 deleterious(0) probably_damaging(0.998) TCGA-EI-6513-01 8 54912588 54912588 A C TCEA1 Missense_Mutation p.V50G 0.29 deleterious(0) probably_damaging(0.997) TCGA-EI-6513-01 8 55537346 55537346 T G RP1 Missense_Mutation p.L302V 0.59 tolerated(0.06) possibly_damaging(0.559) TCGA-EI-6513-01 8 59060454 59060454 A T FAM110B 3'UTR 0.35 TCGA-EI-6513-01 8 77896289 77896289 A T PEX2 Missense_Mutation p.H42Q 0.27 tolerated(1) benign(0.028) TCGA-EI-6513-01 8 80942405 80942405 G T MRPS28 Silent p.R27R 0.25 TCGA-EI-6513-01 8 95504978 95504978 C G KIAA1429 Missense_Mutation p.E1570D 0.30 tolerated(0.13) benign(0.078) TCGA-EI-6513-01 8 99169877 99169877 G A POP1 Nonsense_Mutation p.W818* 0.52 TCGA-EI-6513-01 9 104048480 104048480 A G LPPR1 Missense_Mutation p.Y116C 0.52 deleterious(0.01) probably_damaging(0.979) TCGA-EI-6513-01 9 128099567 128099567 A G GAPVD1 Silent p.P885P 0.48 TCGA-EI-6513-01 9 35616484 35616484 C T CD72 Intron 0.54 TCGA-EI-6513-01 9 37801294 37801295 - G DCAF10 Frame_Shift_Ins p.N144Kfs*7 0.50 TCGA-EI-6513-01 9 77431873 77431873 A C TRPM6 Missense_Mutation p.I381R 0.27 deleterious(0) probably_damaging(0.95) TCGA-EI-6513-01 9 79119301 79119301 A T GCNT1 3'UTR 0.40 TCGA-EI-6513-01 9 79119302 79119302 A T GCNT1 3'UTR 0.39 TCGA-EI-6513-01 X 135427749 135427749 T G GPR112 Silent p.A628A 0.31 TCGA-EI-6513-01 X 136649589 136649589 A T ZIC3 Missense_Mutation p.I247F 0.20 deleterious(0) possibly_damaging(0.79) TCGA-EI-6513-01 X 149931133 149931133 C T MTMR1 Silent p.A643A 0.82 TCGA-EI-6513-01 X 151821132 151821132 G A GABRQ Silent p.S429S 0.91 TCGA-EI-6513-01 X 152845525 152845525 G A ATP2B3 Silent p.T1144T 0.89 TCGA-EI-6513-01 X 153073814 153073814 C T PDZD4 Splice_Site p.X99_splice 0.44 TCGA-EI-6513-01 X 30260888 30260888 C T MAGEB4 Silent p.G212G 0.53 TCGA-EI-6513-01 X 57621951 57621951 C T ZXDB 3'UTR 0.87 TCGA-EI-6513-01 X 70340955 70340955 A G MED12 Missense_Mutation p.I230V 0.93 benign(0.003) TCGA-EI-6513-01 X 78427132 78427132 T G GPR174 Missense_Mutation p.L210V 0.33 tolerated(0.29) benign(0.039) TCGA-EI-6513-01 X 83129284 83129284 A C CYLC1 Missense_Mutation p.E523A 0.33 tolerated(0.22) benign(0.403) TCGA-EI-6514-01 10 108431070 108431070 C T SORCS1 Missense_Mutation p.R705Q 0.45 tolerated(0.06) benign(0.103) TCGA-EI-6514-01 10 134912201 134912201 G A GPR123 Silent p.A63A 0.26 TCGA-EI-6514-01 10 30317996 30317996 T C KIAA1462 Missense_Mutation p.T361A 0.09 tolerated(0.93) benign(0.004) TCGA-EI-6514-01 10 69933945 69933945 C A MYPN Missense_Mutation p.A699D 0.52 tolerated(0.37) benign(0.07) TCGA-EI-6514-01 10 88703011 88703011 G A MMRN2 Silent p.D510D 0.64 TCGA-EI-6514-01 11 30034491 30034491 G A KCNA4 5'UTR 0.47 TCGA-EI-6514-01 11 5510754 5510754 C A OR52D1 Missense_Mutation p.P273H 0.14 deleterious(0) probably_damaging(1) TCGA-EI-6514-01 11 55927445 55927445 C A OR8K5 Missense_Mutation p.A117S 0.24 tolerated_low_confidence(0.06) benign(0.099) TCGA-EI-6514-01 11 56949551 56949551 C T LRRC55 Silent p.L62L 0.18 TCGA-EI-6514-01 11 60635196 60635196 C T ZP1 Silent p.P54P 0.10 TCGA-EI-6514-01 11 64577262 64577262 G C MEN1 Missense_Mutation p.P107R 0.22 tolerated(0.43) benign(0.406) TCGA-EI-6514-01 11 7530901 7530901 G A OLFML1 Missense_Mutation p.A231T 0.12 deleterious(0.01) benign(0.042) TCGA-EI-6514-01 12 10584723 10584723 C G KLRC2 Missense_Mutation p.G189A 0.09 deleterious(0.01) benign(0.291) TCGA-EI-6514-01 12 108051497 108051497 A T BTBD11 3'UTR 0.14 TCGA-EI-6514-01 12 11506230 11506230 G T PRB1 Missense_Mutation p.S136R 0.83 deleterious_low_confidence(0.05) unknown(0) TCGA-EI-6514-01 12 18891431 18891431 G A CAPZA3 Missense_Mutation p.V77I 0.43 deleterious(0.03) possibly_damaging(0.701) TCGA-EI-6514-01 12 22063813 22063813 C T ABCC9 Missense_Mutation p.A371T 0.12 tolerated(0.35) benign(0.038) TCGA-EI-6514-01 12 27944647 27944647 C T KLHL42 Silent p.N293N 0.24 TCGA-EI-6514-01 12 53004495 53004495 C T KRT73 Missense_Mutation p.R412Q 0.19 deleterious(0.05) possibly_damaging(0.643) TCGA-EI-6514-01 12 645437 645437 C T B4GALNT3 Silent p.N109N 0.17 TCGA-EI-6514-01 12 81528659 81528659 A G ACSS3 Missense_Mutation p.Y174C 0.59 deleterious(0) probably_damaging(1) TCGA-EI-6514-01 12 8211860 8211860 A T C3AR1 Missense_Mutation p.S308T 0.09 tolerated(0.41) benign(0.005) TCGA-EI-6514-01 13 101710370 101710370 C T NALCN Silent p.S1648S 0.11 TCGA-EI-6514-01 13 102368137 102368137 C T ITGBL1 3'UTR 0.30 TCGA-EI-6514-01 13 37678594 37678594 C T CSNK1A1L Missense_Mutation p.R267H 0.24 tolerated_low_confidence(0.1) benign(0.032) TCGA-EI-6514-01 13 47409737 47409737 G A HTR2A Silent p.D217D 0.11 TCGA-EI-6514-01 13 94197639 94197639 G T GPC6 Missense_Mutation p.R95L 0.46 tolerated(0.08) possibly_damaging(0.559) TCGA-EI-6514-01 14 35596790 35596790 T C KIAA0391 Silent p.G380G 0.08 TCGA-EI-6514-01 15 102192523 102192523 C T TM2D3 Silent p.L14L 0.73 TCGA-EI-6514-01 15 77329444 77329444 A G PSTPIP1 Missense_Mutation p.E393G 0.10 deleterious(0.03) benign(0.208) TCGA-EI-6514-01 16 11772825 11772825 A G SNN 3'UTR 0.38 TCGA-EI-6514-01 16 1818732 1818732 G A MAPK8IP3 Silent p.E1306E 0.19 TCGA-EI-6514-01 16 23093844 23093844 C A USP31 Missense_Mutation p.C622F 0.10 deleterious(0) probably_damaging(1) TCGA-EI-6514-01 16 31447115 31447115 G A ZNF843 3'UTR 0.15 TCGA-EI-6514-01 16 49525052 49525052 G A ZNF423 3'UTR 0.45 TCGA-EI-6514-01 16 64981515 64981515 G A CDH11 Silent p.D794D 0.08 TCGA-EI-6514-01 16 67702174 67702174 A C C16orf86 Missense_Mutation p.K209Q 0.13 deleterious(0.01) benign(0) TCGA-EI-6514-01 16 737286 737286 G A WDR24 Missense_Mutation p.R264C 0.28 deleterious(0) possibly_damaging(0.901) TCGA-EI-6514-01 16 76461348 76461348 G A CNTNAP4 Splice_Site p.X106_splice 0.04 TCGA-EI-6514-01 16 82104700 82104700 A G HSD17B2 Missense_Mutation p.K211R 0.49 tolerated(0.21) benign(0.246) TCGA-EI-6514-01 17 1198852 1198852 T C TUSC5 Missense_Mutation p.L152P 0.12 deleterious(0) probably_damaging(0.973) TCGA-EI-6514-01 17 15619891 15619891 A G ZNF286A Missense_Mutation p.N285D 0.34 tolerated(0.2) probably_damaging(0.987) TCGA-EI-6514-01 17 30274655 30274655 G T SUZ12 Missense_Mutation p.D136Y 0.07 deleterious(0.03) possibly_damaging(0.708) TCGA-EI-6514-01 17 33588041 33588041 C T SLFN5 Missense_Mutation p.T355M 0.50 deleterious(0.01) probably_damaging(0.993) TCGA-EI-6514-01 17 42478353 42478353 A C GPATCH8 Silent p.P364P 0.08 TCGA-EI-6514-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.78 deleterious(0) probably_damaging(0.998) TCGA-EI-6514-01 18 21736637 21736637 C T CABYR Intron 0.10 TCGA-EI-6514-01 18 22806421 22806421 G A ZNF521 Silent p.N487N 0.37 TCGA-EI-6514-01 18 33744448 33744448 A T ELP2 Missense_Mutation p.K656I 0.07 deleterious(0.03) possibly_damaging(0.598) TCGA-EI-6514-01 18 60999070 60999070 A G KDSR Missense_Mutation p.V315A 0.11 tolerated(0.06) possibly_damaging(0.566) TCGA-EI-6514-01 18 76754090 76754090 C T SALL3 Missense_Mutation p.T700M 0.73 deleterious(0) probably_damaging(0.998) TCGA-EI-6514-01 19 14028959 14028959 G A CC2D1A Silent p.K275K 0.42 TCGA-EI-6514-01 19 15383896 15383896 G A BRD4 Silent p.S5S 0.25 TCGA-EI-6514-01 19 16860906 16860906 G T NWD1 Missense_Mutation p.D485Y 0.33 deleterious(0) possibly_damaging(0.771) TCGA-EI-6514-01 19 35500078 35500078 C T GRAMD1A Missense_Mutation p.R22W 0.41 deleterious(0) unknown(0) TCGA-EI-6514-01 19 42092798 42092798 C T CEACAM21 Intron 0.25 TCGA-EI-6514-01 19 43237120 43237120 G A PSG3 Silent p.D175D 0.05 TCGA-EI-6514-01 19 48956154 48956154 C T GRWD1 Nonsense_Mutation p.Q405* 0.16 TCGA-EI-6514-01 19 49514566 49514566 C T RUVBL2 Nonsense_Mutation p.R334* 0.48 TCGA-EI-6514-01 19 52227212 52227212 C A HAS1 5'UTR 0.12 TCGA-EI-6514-01 19 54627875 54627875 C T PRPF31 Intron 0.39 TCGA-EI-6514-01 19 55106760 55106760 G T LILRA1 Missense_Mutation p.G185V 0.42 deleterious(0.04) possibly_damaging(0.711) TCGA-EI-6514-01 19 55773994 55773994 G A HSPBP1 Silent p.D354D 0.16 TCGA-EI-6514-01 19 58018737 58018737 G A ZNF773 Missense_Mutation p.R425H 0.38 deleterious(0.02) possibly_damaging(0.843) TCGA-EI-6514-01 19 7987578 7987578 G C SNAPC2 Missense_Mutation p.G312R 0.38 deleterious(0) probably_damaging(0.997) TCGA-EI-6514-01 19 8136958 8136958 G A FBN3 Nonsense_Mutation p.R2688* 0.43 TCGA-EI-6514-01 1 115267924 115267924 T C CSDE1 Silent p.E603E 0.30 TCGA-EI-6514-01 1 160000512 160000512 G A PIGM Missense_Mutation p.L340F 0.60 tolerated(0.12) probably_damaging(0.999) TCGA-EI-6514-01 1 220826513 220826513 C T MARK1 Missense_Mutation p.R603C 0.31 deleterious(0.04) benign(0.004) TCGA-EI-6514-01 1 240256018 240256018 C T FMN2 Silent p.I203I 0.09 TCGA-EI-6514-01 1 240371488 240371488 G A FMN2 Missense_Mutation p.G1126R 0.37 unknown(0) TCGA-EI-6514-01 1 248039414 248039414 G T TRIM58 Missense_Mutation p.V362F 0.06 deleterious(0) probably_damaging(0.997) TCGA-EI-6514-01 1 3662172 3662172 G A TP73-AS1 Intron 0.28 TCGA-EI-6514-01 1 45294707 45294707 C T PTCH2 Missense_Mutation p.V471I 0.40 tolerated(0.55) benign(0.004) TCGA-EI-6514-01 1 48877214 48877214 C T SPATA6 Missense_Mutation p.M109I 0.24 deleterious(0.01) possibly_damaging(0.758) TCGA-EI-6514-01 21 30949318 30949318 G A GRIK1 Missense_Mutation p.A699V 0.14 tolerated(0.19) benign(0.124) TCGA-EI-6514-01 21 31654616 31654616 C A KRTAP24-1 Missense_Mutation p.S212I 0.51 tolerated(0.2) possibly_damaging(0.766) TCGA-EI-6514-01 21 45533649 45533649 G A PWP2 Silent p.T49T 0.55 TCGA-EI-6514-01 22 19119705 19119705 G A TSSK2 Missense_Mutation p.E265K 0.17 deleterious(0.05) benign(0.142) TCGA-EI-6514-01 22 20127002 20127002 G A ZDHHC8 Silent p.A76A 0.38 TCGA-EI-6514-01 22 22051172 22051172 A G PPIL2 Splice_Site p.X522_splice 0.23 TCGA-EI-6514-01 22 26830101 26830101 C G ASPHD2 Missense_Mutation p.P174A 0.31 deleterious(0.02) possibly_damaging(0.793) TCGA-EI-6514-01 22 42607915 42607915 G A TCF20 Missense_Mutation p.R1133W 0.09 benign(0.21) TCGA-EI-6514-01 2 141299403 141299403 G A LRP1B Silent p.S2444S 0.36 TCGA-EI-6514-01 2 15629144 15629144 A T NBAS Missense_Mutation p.D319E 0.34 deleterious(0) probably_damaging(0.971) TCGA-EI-6514-01 2 161030485 161030485 C T ITGB6 Silent p.K253K 0.07 TCGA-EI-6514-01 2 169551519 169551520 - TGGTCTTTGA CERS6 Frame_Shift_Ins p.F194Vfs*9 0.09 TCGA-EI-6514-01 2 170550915 170550915 C T CCDC173 5'UTR 0.25 TCGA-EI-6514-01 2 191873791 191873791 A T STAT1 Missense_Mutation p.F57L 0.25 tolerated(0.27) benign(0.193) TCGA-EI-6514-01 2 208988849 208988849 C T CRYGD Missense_Mutation p.R80H 0.08 tolerated(0.09) benign(0.061) TCGA-EI-6514-01 2 220500081 220500081 C T SLC4A3 Missense_Mutation p.P639L 0.53 deleterious(0) probably_damaging(0.999) TCGA-EI-6514-01 2 231742248 231742248 G A ITM2C Missense_Mutation p.R232H 0.16 deleterious(0.01) probably_damaging(0.972) TCGA-EI-6514-01 2 236945219 236945222 TTTG ATA AGAP1 Frame_Shift_Del p.F554Ifs*50 0.15 TCGA-EI-6514-01 2 241685585 241685585 C A KIF1A Nonsense_Mutation p.E1025* 0.36 TCGA-EI-6514-01 2 33468768 33468768 G T LTBP1 Missense_Mutation p.G639V 0.10 deleterious(0) probably_damaging(0.999) TCGA-EI-6514-01 2 38294198 38294198 C T RMDN2 3'UTR 0.18 TCGA-EI-6514-01 2 42396747 42396747 G A EML4 5'UTR 0.41 TCGA-EI-6514-01 3 137729148 137729148 G A CLDN18 Missense_Mutation p.M27I 0.20 tolerated(0.13) benign(0.05) TCGA-EI-6514-01 3 169574571 169574571 T C LRRC31 Missense_Mutation p.K193E 0.19 tolerated(0.12) benign(0.013) TCGA-EI-6514-01 3 195509278 195509278 T G MUC4 Missense_Mutation p.H3058P 0.64 unknown(0) TCGA-EI-6514-01 3 53684844 53684844 C T CACNA1D Silent p.V174V 0.25 TCGA-EI-6514-01 3 74413682 74413682 C A CNTN3 Missense_Mutation p.M383I 0.08 tolerated(0.06) benign(0.058) TCGA-EI-6514-01 4 126372789 126372789 A G FAT4 Missense_Mutation p.N3540D 0.51 probably_damaging(0.999) TCGA-EI-6514-01 4 189022313 189022313 C A TRIML2 Missense_Mutation p.R76I 0.26 deleterious(0.05) benign(0.271) TCGA-EI-6514-01 4 73923925 73923925 T C COX18 Missense_Mutation p.Q303R 0.11 tolerated(1) benign(0) TCGA-EI-6514-01 5 112174682 112174682 C T APC Nonsense_Mutation p.Q1131* 0.49 TCGA-EI-6514-01 5 112175225 112175225 G T APC Nonsense_Mutation p.G1312* 0.34 TCGA-EI-6514-01 5 127873092 127873092 C T FBN2 Missense_Mutation p.A69T 0.24 tolerated(0.18) unknown(0) TCGA-EI-6514-01 5 140237670 140237670 G A PCDHA10 Silent p.S679S 0.46 TCGA-EI-6514-01 5 140250862 140250862 C T PCDHA11 Missense_Mutation p.T725M 0.08 tolerated_low_confidence(0.07) benign(0.002) TCGA-EI-6514-01 5 140255095 140255095 G A PCDHA12 Missense_Mutation p.R13H 0.38 tolerated_low_confidence(0.2) benign(0.009) TCGA-EI-6514-01 5 140308177 140308177 T A PCDHAC1 Missense_Mutation p.V567E 0.23 deleterious(0.03) benign(0.414) TCGA-EI-6514-01 5 140515206 140515206 G A PCDHB5 Missense_Mutation p.A64T 0.07 tolerated_low_confidence(0.05) possibly_damaging(0.589) TCGA-EI-6514-01 5 140515570 140515570 G A PCDHB5 Missense_Mutation p.R185H 0.13 tolerated_low_confidence(0.27) benign(0.005) TCGA-EI-6514-01 5 140752107 140752107 C T PCDHGB3 Nonsense_Mutation p.R716* 0.10 TCGA-EI-6514-01 5 141008874 141008874 C A HDAC3 Splice_Site p.X159_splice 0.22 TCGA-EI-6514-01 5 148679856 148679856 T G AFAP1L1 Nonsense_Mutation p.Y56* 0.28 TCGA-EI-6514-01 5 156381551 156381551 C A TIMD4 Missense_Mutation p.R92I 0.24 deleterious(0.02) possibly_damaging(0.854) TCGA-EI-6514-01 5 15937258 15937258 G A FBXL7 Missense_Mutation p.R480H 0.48 deleterious(0) probably_damaging(0.948) TCGA-EI-6514-01 5 161580207 161580207 G A GABRG2 Missense_Mutation p.D461N 0.10 tolerated(0.08) possibly_damaging(0.637) TCGA-EI-6514-01 5 170308843 170308843 C T RANBP17 Missense_Mutation p.L67F 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-EI-6514-01 5 68414385 68414385 C T SLC30A5 Missense_Mutation p.A500V 0.45 deleterious(0) probably_damaging(0.995) TCGA-EI-6514-01 6 100838738 100838738 T G SIM1 Missense_Mutation p.K600N 0.52 tolerated_low_confidence(0.06) probably_damaging(0.918) TCGA-EI-6514-01 6 160968940 160968940 G A LPA Missense_Mutation p.R1729W 0.58 deleterious(0) probably_damaging(0.977) TCGA-EI-6514-01 6 30955422 30955422 G A MUC21 Silent p.A490A 0.51 TCGA-EI-6514-01 6 32037983 32037983 G A TNXB Silent p.A1733A 0.30 TCGA-EI-6514-01 7 104722231 104722231 G C KMT2E Missense_Mutation p.D449H 0.09 deleterious(0.01) possibly_damaging(0.861) TCGA-EI-6514-01 7 121652712 121652712 T C PTPRZ1 Silent p.S1204S 0.22 TCGA-EI-6514-01 7 122634857 122634857 G T TAS2R16 Missense_Mutation p.L278M 0.14 tolerated(0.08) possibly_damaging(0.849) TCGA-EI-6514-01 7 128548608 128548608 G T AC025594.1 3'Flank 0.20 TCGA-EI-6514-01 7 143510090 143510090 A G RP11-61L23.2 RNA 0.06 TCGA-EI-6514-01 7 144075869 144075869 C T ARHGEF5 Nonsense_Mutation p.Q1516* 0.07 TCGA-EI-6514-01 7 156754923 156754923 G A NOM1 Missense_Mutation p.V571M 0.60 deleterious(0.01) benign(0.327) TCGA-EI-6514-01 7 17885275 17885275 A G SNX13 Missense_Mutation p.C370R 0.09 tolerated(0.2) possibly_damaging(0.759) TCGA-EI-6514-01 7 42003934 42003934 C A GLI3 Missense_Mutation p.M1579I 0.30 tolerated(0.1) benign(0.002) TCGA-EI-6514-01 7 5342464 5342464 C T SLC29A4 Missense_Mutation p.T496M 0.30 tolerated(0.14) possibly_damaging(0.73) TCGA-EI-6514-01 7 87145948 87145948 G A ABCB1 Silent p.A987A 0.16 TCGA-EI-6514-01 8 141294110 141294110 G A TRAPPC9 Silent p.T762T 0.37 TCGA-EI-6514-01 8 144659319 144659319 C T NAPRT1 Silent p.A199A 0.33 TCGA-EI-6514-01 8 28206745 28206745 C A ZNF395 Missense_Mutation p.V443F 0.11 tolerated(0.36) possibly_damaging(0.812) TCGA-EI-6514-01 8 3611465 3611465 G A CSMD1 Silent p.N306N 0.28 TCGA-EI-6514-01 8 442595 442595 G T TDRP Missense_Mutation p.A121D 0.06 tolerated(0.06) probably_damaging(0.911) TCGA-EI-6514-01 8 54730077 54730077 C T ATP6V1H Missense_Mutation p.R107H 0.54 deleterious(0.01) probably_damaging(1) TCGA-EI-6514-01 8 69728143 69728143 C T C8orf34 Silent p.C524C 0.25 TCGA-EI-6514-01 8 97621679 97621679 G A SDC2 Missense_Mutation p.R170H 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6514-01 9 140261045 140261045 C T EXD3 Missense_Mutation p.V186M 0.80 deleterious(0.03) benign(0.074) TCGA-EI-6514-01 X 101858190 101858190 G T ARMCX5 Missense_Mutation p.S374I 0.16 deleterious(0) possibly_damaging(0.5) TCGA-EI-6514-01 X 106117075 106117075 G C TBC1D8B Missense_Mutation p.Q1081H 0.21 tolerated(0.2) benign(0.318) TCGA-EI-6514-01 X 148797932 148797932 G A MAGEA11 Silent p.E262E 0.08 TCGA-EI-6514-01 X 21444687 21444687 G A CNKSR2 Missense_Mutation p.R46H 0.15 tolerated(0.41) benign(0.003) TCGA-EI-6514-01 X 23353333 23353333 T A PTCHD1 Missense_Mutation p.L114Q 0.07 tolerated(0.56) possibly_damaging(0.522) TCGA-EI-6514-01 X 48456174 48456174 G A WDR13 5'UTR 0.23 TCGA-EI-6514-01 X 48826739 48826739 T C KCND1 5'UTR 0.10 TCGA-EI-6514-01 X 70053362 70053362 C T TEX11 Splice_Site p.X217_splice 0.26 TCGA-EI-6881-01 10 127424360 127424360 G T EDRF1 Nonsense_Mutation p.G549* 0.18 TCGA-EI-6881-01 10 26409725 26409725 G T MYO3A Nonsense_Mutation p.E633* 0.19 TCGA-EI-6881-01 10 55566762 55566762 G A PCDH15 Silent p.N1541N 0.23 TCGA-EI-6881-01 10 64005775 64005775 C A RTKN2 Missense_Mutation p.G100V 0.25 deleterious(0) probably_damaging(0.965) TCGA-EI-6881-01 10 96039555 96039555 C A PLCE1 Missense_Mutation p.S1561Y 0.30 tolerated(0.23) benign(0.019) TCGA-EI-6881-01 11 100211382 100211382 G A CNTN5 Splice_Site p.X973_splice 0.18 TCGA-EI-6881-01 11 117303143 117303143 C T DSCAML1 Missense_Mutation p.V1762I 0.46 tolerated(0.44) possibly_damaging(0.784) TCGA-EI-6881-01 11 117779415 117779415 G A TMPRSS13 Silent p.A398A 0.39 TCGA-EI-6881-01 11 119044752 119044752 C T NLRX1 Missense_Mutation p.P265L 0.37 deleterious(0.02) benign(0.021) TCGA-EI-6881-01 11 57314067 57314067 G A SMTNL1 Missense_Mutation p.A446T 0.22 tolerated(0.2) benign(0.032) TCGA-EI-6881-01 11 58605747 58605747 C T GLYATL2 Missense_Mutation p.R58Q 0.22 tolerated(0.06) benign(0.059) TCGA-EI-6881-01 11 75282967 75282967 T C SERPINH1 Missense_Mutation p.F366L 0.10 tolerated(0.61) benign(0.08) TCGA-EI-6881-01 11 89133455 89133455 C T NOX4 Silent p.S313S 0.38 TCGA-EI-6881-01 11 9316821 9316821 A T TMEM41B Missense_Mutation p.F118Y 0.09 deleterious(0) possibly_damaging(0.885) TCGA-EI-6881-01 12 10600185 10600185 C T KLRC1 Missense_Mutation p.R179H 0.07 deleterious(0.05) possibly_damaging(0.779) TCGA-EI-6881-01 12 13237999 13237999 C T GSG1 Missense_Mutation p.V286M 0.41 tolerated(0.1) benign(0.397) TCGA-EI-6881-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.51 deleterious(0.02) possibly_damaging(0.773) TCGA-EI-6881-01 12 48737402 48737402 T C ZNF641 Missense_Mutation p.E224G 0.08 tolerated(0.34) benign(0.024) TCGA-EI-6881-01 12 54966452 54966452 C T PDE1B Missense_Mutation p.P221L 0.18 deleterious(0.02) probably_damaging(0.994) TCGA-EI-6881-01 12 81072441 81072441 C T PTPRQ Nonsense_Mutation p.Q2263* 0.17 TCGA-EI-6881-01 12 86198383 86198383 A G RASSF9 3'UTR 0.09 TCGA-EI-6881-01 12 8988924 8988924 A T A2ML1 Missense_Mutation p.K239N 0.20 deleterious(0.04) benign(0.334) TCGA-EI-6881-01 13 108862132 108862132 C T LIG4 Silent p.E495E 0.92 TCGA-EI-6881-01 13 111132727 111132727 C T COL4A2 Silent p.P916P 0.07 TCGA-EI-6881-01 13 42264330 42264330 C T VWA8 Silent p.P1316P 0.06 TCGA-EI-6881-01 13 42335327 42335327 T - VWA8 Frame_Shift_Del p.N788Tfs*51 0.33 TCGA-EI-6881-01 13 70275780 70275780 T C KLHL1 3'UTR 0.87 TCGA-EI-6881-01 13 70681742 70681742 G A KLHL1 Silent p.G30G 0.89 TCGA-EI-6881-01 14 24886075 24886075 A G NYNRIN Missense_Mutation p.D1707G 0.10 deleterious_low_confidence(0.02) benign(0.075) TCGA-EI-6881-01 14 38725367 38725367 C T CLEC14A 5'UTR 0.82 TCGA-EI-6881-01 14 65253730 65253730 G A SPTB Missense_Mutation p.R985W 0.24 deleterious(0) possibly_damaging(0.766) TCGA-EI-6881-01 14 74185973 74185973 G A ELMSAN1 3'UTR 0.64 TCGA-EI-6881-01 14 79434627 79434627 G A NRXN3 Missense_Mutation p.R654H 0.59 deleterious(0) probably_damaging(0.91) TCGA-EI-6881-01 15 51535173 51535173 A T CYP19A1 Intron 0.65 TCGA-EI-6881-01 15 85213086 85213086 G A SEC11A 3'UTR 0.71 TCGA-EI-6881-01 16 46637933 46637933 G A SHCBP1 Missense_Mutation p.T349M 0.44 deleterious(0.03) benign(0.006) TCGA-EI-6881-01 16 602426 602426 A G CAPN15 Missense_Mutation p.K878R 0.27 tolerated(0.3) benign(0.147) TCGA-EI-6881-01 16 66956100 66956100 C T RRAD Missense_Mutation p.R269Q 0.51 tolerated(0.11) benign(0.281) TCGA-EI-6881-01 17 17772788 17772788 C G TOM1L2 Splice_Site p.X260_splice 0.22 TCGA-EI-6881-01 17 38176163 38176163 A G MED24 Missense_Mutation p.S910P 0.08 tolerated(0.25) benign(0.284) TCGA-EI-6881-01 17 39534314 39534314 A G KRT34 Silent p.N436N 0.30 TCGA-EI-6881-01 17 39978062 39978062 C T FKBP10 Missense_Mutation p.P519L 0.36 tolerated(0.74) benign(0.002) TCGA-EI-6881-01 17 46805922 46805922 C T HOXB13 Missense_Mutation p.A12T 0.12 tolerated(0.35) benign(0.002) TCGA-EI-6881-01 17 66913553 66913553 G A ABCA8 Missense_Mutation p.A656V 0.31 tolerated(0.47) benign(0.052) TCGA-EI-6881-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.65 TCGA-EI-6881-01 17 76482456 76482456 C T DNAH17 Silent p.P2303P 0.21 TCGA-EI-6881-01 17 9792789 9792789 T A GLP2R Missense_Mutation p.C477S 0.18 tolerated(0.19) benign(0.016) TCGA-EI-6881-01 18 14842913 14842913 T C ANKRD30B Missense_Mutation p.S914P 0.18 deleterious(0.04) probably_damaging(0.981) TCGA-EI-6881-01 18 21508151 21508151 G A LAMA3 Missense_Mutation p.V2748I 0.58 benign(0.012) TCGA-EI-6881-01 18 22807375 22807375 G A ZNF521 Silent p.T169T 0.63 TCGA-EI-6881-01 18 67992718 67992718 G T SOCS6 Missense_Mutation p.D272Y 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.779) TCGA-EI-6881-01 19 15061039 15061039 G A SLC1A6 Missense_Mutation p.R555W 0.47 deleterious(0) probably_damaging(0.985) TCGA-EI-6881-01 19 46443991 46443991 G T NOVA2 Missense_Mutation p.D203E 0.43 deleterious(0) unknown(0) TCGA-EI-6881-01 19 46498395 46498395 C T CCDC61 5'Flank 0.13 TCGA-EI-6881-01 19 49797757 49797757 G A SLC6A16 Missense_Mutation p.A428V 0.35 tolerated(0.18) possibly_damaging(0.576) TCGA-EI-6881-01 19 51169734 51169734 G A SHANK1 Missense_Mutation p.P1828L 0.60 unknown(0) TCGA-EI-6881-01 19 52705202 52705202 C T PPP2R1A Silent p.R28R 0.22 TCGA-EI-6881-01 19 54403910 54403910 C G PRKCG Missense_Mutation p.I494M 0.19 deleterious(0) probably_damaging(0.999) TCGA-EI-6881-01 19 54561791 54561791 C T VSTM1 Missense_Mutation p.E42K 0.33 tolerated(1) benign(0.003) TCGA-EI-6881-01 19 55690553 55690553 C G SYT5 Intron 0.27 TCGA-EI-6881-01 1 12342964 12342964 C A VPS13D Missense_Mutation p.T1602N 0.36 benign(0.006) TCGA-EI-6881-01 1 152127321 152127321 G C RPTN Missense_Mutation p.Q752E 0.38 deleterious(0.04) benign(0.407) TCGA-EI-6881-01 1 152276186 152276186 G A FLG Missense_Mutation p.R3726W 0.37 unknown(0) TCGA-EI-6881-01 1 156108384 156108384 G A LMNA Missense_Mutation p.G602S 0.38 tolerated_low_confidence(0.56) benign(0.001) TCGA-EI-6881-01 1 158262414 158262414 C A CD1C Silent p.R213R 0.35 TCGA-EI-6881-01 1 158624499 158624499 G T SPTA1 Missense_Mutation p.Q980K 0.34 tolerated(0.09) benign(0.05) TCGA-EI-6881-01 1 16945410 16945410 C A RP5-1182A14.5 3'Flank 0.08 TCGA-EI-6881-01 1 179887239 179887239 G A TOR1AIP1 Silent p.K539K 0.10 TCGA-EI-6881-01 1 181767736 181767736 C T CACNA1E Silent p.H2236H 0.13 TCGA-EI-6881-01 1 183920158 183920158 G A COLGALT2 Silent p.V373V 0.39 TCGA-EI-6881-01 1 228481236 228481236 C T OBSCN Missense_Mutation p.R4113C 0.37 benign(0.06) TCGA-EI-6881-01 1 33625475 33625475 C T TRIM62 Missense_Mutation p.R192H 0.17 deleterious(0) possibly_damaging(0.639) TCGA-EI-6881-01 1 3768890 3768890 C T CEP104 Missense_Mutation p.A28T 0.48 deleterious(0.01) probably_damaging(0.964) TCGA-EI-6881-01 1 45293290 45293290 G A PTCH2 Missense_Mutation p.R719W 0.37 deleterious(0) possibly_damaging(0.656) TCGA-EI-6881-01 1 6521749 6521749 C T TNFRSF25 Silent p.P342P 0.53 TCGA-EI-6881-01 1 71418640 71418640 C T PTGER3 Missense_Mutation p.V403M 0.44 tolerated_low_confidence(0.09) benign(0) TCGA-EI-6881-01 1 9027741 9027741 C T CA6 Missense_Mutation p.L199F 0.34 tolerated(0.37) possibly_damaging(0.637) TCGA-EI-6881-01 1 92712183 92712183 G T GLMN Missense_Mutation p.F563L 0.35 tolerated(0.12) benign(0.017) TCGA-EI-6881-01 20 37182628 37182628 C T RALGAPB Missense_Mutation p.T1094M 0.53 tolerated(0.11) possibly_damaging(0.571) TCGA-EI-6881-01 20 46277839 46277839 C T NCOA3 Nonsense_Mutation p.Q1213* 0.50 TCGA-EI-6881-01 20 47266679 47266679 C T PREX1 Silent p.P961P 0.55 TCGA-EI-6881-01 20 57036392 57036392 G T APCDD1L Missense_Mutation p.D320E 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-EI-6881-01 20 9417712 9417712 G A PLCB4 Missense_Mutation p.A881T 0.06 tolerated(0.56) benign(0.011) TCGA-EI-6881-01 22 20130660 20130660 G A ZDHHC8 Missense_Mutation p.G503R 0.79 deleterious(0.03) possibly_damaging(0.448) TCGA-EI-6881-01 22 21133593 21133593 C T SERPIND1 5'UTR 0.38 TCGA-EI-6881-01 22 23162014 23162014 C T IGLV3-9 Missense_Mutation p.T36M 0.20 tolerated(0.1) benign(0.256) TCGA-EI-6881-01 2 110049114 110049114 A G SH3RF3 Missense_Mutation p.T521A 0.10 tolerated(0.46) benign(0.137) TCGA-EI-6881-01 2 1271204 1271204 A G SNTG2 Missense_Mutation p.E382G 0.47 tolerated(0.36) benign(0.008) TCGA-EI-6881-01 2 165353728 165353728 T A GRB14 Silent p.T429T 0.40 TCGA-EI-6881-01 2 167162315 167162315 C T SCN9A Missense_Mutation p.V195I 0.40 tolerated(0.09) probably_damaging(1) TCGA-EI-6881-01 2 179437700 179437700 T A TTN Missense_Mutation p.T24387S 0.12 TCGA-EI-6881-01 2 197523559 197523559 G A CCDC150 Missense_Mutation p.R207H 0.36 tolerated(0.2) benign(0.03) TCGA-EI-6881-01 2 231947623 231947623 C A PSMD1 Silent p.G480G 0.17 TCGA-EI-6881-01 2 242002305 242002305 C T SNED1 Silent p.G785G 0.43 TCGA-EI-6881-01 2 39519945 39519945 C G MAP4K3 Missense_Mutation p.D414H 0.20 tolerated(0.05) possibly_damaging(0.681) TCGA-EI-6881-01 2 71797059 71797059 G A DYSF Missense_Mutation p.D992N 0.52 tolerated(0.13) probably_damaging(0.992) TCGA-EI-6881-01 2 96809495 96809495 G T DUSP2 3'UTR 0.18 TCGA-EI-6881-01 3 111394256 111394257 - T PLCXD2 Splice_Site p.X55_splice 0.20 TCGA-EI-6881-01 3 114014640 114014640 G T TIGIT Missense_Mutation p.G104W 0.32 deleterious(0) probably_damaging(1) TCGA-EI-6881-01 3 126154457 126154457 C T CCDC37 Missense_Mutation p.R562W 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6881-01 3 132202361 132202361 C T DNAJC13 Missense_Mutation p.T1041I 0.23 deleterious(0) benign(0.081) TCGA-EI-6881-01 3 179502063 179502063 C T USP13 3'UTR 0.31 TCGA-EI-6881-01 3 38232293 38232293 A G OXSR1 Silent p.K85K 0.41 TCGA-EI-6881-01 3 47044776 47044776 C G NBEAL2 Missense_Mutation p.D1899E 0.08 tolerated(1) benign(0.002) TCGA-EI-6881-01 3 47165737 47165737 G T SETD2 Missense_Mutation p.S130Y 0.29 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EI-6881-01 3 62063908 62063908 C T PTPRG Silent p.I197I 0.19 TCGA-EI-6881-01 4 100504690 100504690 G C MTTP Intron 0.19 TCGA-EI-6881-01 4 38016594 38016594 G A TBC1D1 Silent p.T294T 0.52 TCGA-EI-6881-01 4 41748309 41748309 G A PHOX2B Missense_Mutation p.R154C 0.10 deleterious(0) unknown(0) TCGA-EI-6881-01 4 517322 517322 G T PIGG Missense_Mutation p.L563F 0.15 deleterious(0.02) benign(0.053) TCGA-EI-6881-01 4 6925434 6925434 G A TBC1D14 Silent p.A106A 0.64 TCGA-EI-6881-01 4 88732624 88732624 C T IBSP Silent p.N172N 0.47 TCGA-EI-6881-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.20 TCGA-EI-6881-01 5 112179417 112179417 G T APC Missense_Mutation p.G2709V 0.31 possibly_damaging(0.788) TCGA-EI-6881-01 5 133537617 133537617 T C PPP2CA Silent p.K136K 0.22 TCGA-EI-6881-01 5 148422350 148422350 G T SH3TC2 Missense_Mutation p.L146I 0.19 deleterious(0) probably_damaging(0.999) TCGA-EI-6881-01 5 167379710 167379710 A T TENM2 Missense_Mutation p.N277I 0.38 tolerated_low_confidence(0.15) possibly_damaging(0.876) TCGA-EI-6881-01 5 179755304 179755304 T G GFPT2 Missense_Mutation p.H190P 0.18 deleterious(0) benign(0.445) TCGA-EI-6881-01 5 26881128 26881128 C T CDH9 3'UTR 0.54 TCGA-EI-6881-01 5 5461087 5461087 A C KIAA0947 Missense_Mutation p.E547A 0.09 tolerated(0.18) benign(0.133) TCGA-EI-6881-01 5 75896647 75896647 C T IQGAP2 Missense_Mutation p.A361V 0.26 tolerated(0.17) benign(0.24) TCGA-EI-6881-01 6 102516312 102516312 G T GRIK2 Missense_Mutation p.V885L 0.38 tolerated(0.11) benign(0.314) TCGA-EI-6881-01 6 110037748 110037748 C T FIG4 Missense_Mutation p.A89V 0.35 tolerated(0.52) benign(0.008) TCGA-EI-6881-01 6 32798417 32798417 C T TAP2 Missense_Mutation p.R480H 0.38 tolerated(0.08) benign(0.017) TCGA-EI-6881-01 6 497484 497484 G A EXOC2 Silent p.F814F 0.31 TCGA-EI-6881-01 6 70852662 70852662 C A COL19A1 Missense_Mutation p.Q526K 0.48 tolerated(1) possibly_damaging(0.63) TCGA-EI-6881-01 7 107866734 107866734 G A NRCAM Silent p.R213R 0.16 TCGA-EI-6881-01 7 139661992 139661992 A T TBXAS1 Missense_Mutation p.E412V 0.18 deleterious(0.05) possibly_damaging(0.833) TCGA-EI-6881-01 7 143092422 143092422 G T EPHA1 Silent p.V691V 0.46 TCGA-EI-6881-01 7 148921497 148921497 C T ZNF282 Missense_Mutation p.H592Y 0.15 deleterious(0) probably_damaging(0.99) TCGA-EI-6881-01 7 45115516 45115516 A T CCM2 Missense_Mutation p.T420S 0.26 deleterious(0.01) possibly_damaging(0.61) TCGA-EI-6881-01 7 99956393 99956393 G A PILRB Missense_Mutation p.V49M 0.41 deleterious(0) probably_damaging(0.999) TCGA-EI-6881-01 8 3224617 3224617 C G CSMD1 Missense_Mutation p.A1018P 0.30 possibly_damaging(0.907) TCGA-EI-6881-01 8 3256970 3256970 T A CSMD1 Missense_Mutation p.H783L 0.21 benign(0.033) TCGA-EI-6881-01 8 82357141 82357141 G A PMP2 Nonsense_Mutation p.R53* 0.38 TCGA-EI-6881-01 9 100408007 100408007 T A NCBP1 Missense_Mutation p.Y202N 0.33 deleterious(0) probably_damaging(0.995) TCGA-EI-6881-01 9 131777085 131777085 G A SH3GLB2 Missense_Mutation p.R145C 0.42 deleterious(0) probably_damaging(0.992) TCGA-EI-6881-01 9 140356758 140356758 G A PNPLA7 Missense_Mutation p.T1173M 0.39 deleterious(0) probably_damaging(0.954) TCGA-EI-6881-01 9 140441760 140441760 C T PNPLA7 Splice_Site p.X65_splice 0.37 TCGA-EI-6881-01 9 34371375 34371375 A G KIAA1161 Missense_Mutation p.S489P 0.35 deleterious(0) probably_damaging(0.999) TCGA-EI-6881-01 9 35811004 35811004 C T SPAG8 Silent p.E305E 0.38 TCGA-EI-6881-01 9 90500915 90500915 C T SPATA31E1 Missense_Mutation p.H505Y 0.19 tolerated(0.11) benign(0.225) TCGA-EI-6881-01 9 916902 916902 C T DMRT1 Missense_Mutation p.A321V 0.35 tolerated(0.09) benign(0.027) TCGA-EI-6881-01 9 95085736 95085736 C T NOL8 Silent p.A63A 0.43 TCGA-EI-6881-01 X 24735477 24735477 C G POLA1 Missense_Mutation p.D253E 0.10 tolerated(0.07) benign(0.21) TCGA-EI-6881-01 X 47058998 47058998 C A UBA1 Missense_Mutation p.F155L 0.83 tolerated(0.62) benign(0.201) TCGA-EI-6881-01 X 73959327 73959327 G A KIAA2022 Silent p.S1488S 0.68 TCGA-EI-6882-01 10 101371082 101371082 G A SLC25A28 Missense_Mutation p.R207W 0.30 deleterious(0) probably_damaging(0.948) TCGA-EI-6882-01 10 101567940 101567940 G A ABCC2 Missense_Mutation p.R590H 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 10 102265717 102265717 C T SEC31B Intron 0.44 TCGA-EI-6882-01 10 102267224 102267224 C T SEC31B Missense_Mutation p.R247H 0.31 deleterious(0.02) probably_damaging(0.936) TCGA-EI-6882-01 10 102738538 102738538 C G MRPL43 3'Flank 0.44 TCGA-EI-6882-01 10 104679666 104679666 G A CNNM2 Missense_Mutation p.G477S 0.09 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 10 108377976 108377976 T G SORCS1 Missense_Mutation p.N951H 0.38 tolerated(0.62) benign(0.029) TCGA-EI-6882-01 10 115343069 115343069 A C HABP2 Missense_Mutation p.K397Q 0.21 tolerated(0.32) possibly_damaging(0.752) TCGA-EI-6882-01 10 115922384 115922385 - A C10orf118 Intron 0.26 TCGA-EI-6882-01 10 115985940 115985940 C T TDRD1 Missense_Mutation p.A1047V 0.34 deleterious(0) benign(0.074) TCGA-EI-6882-01 10 117856253 117856254 - A GFRA1 Frame_Shift_Ins p.T265Yfs*20 0.38 TCGA-EI-6882-01 10 120796727 120796727 G T EIF3A Missense_Mutation p.R1275S 0.46 tolerated_low_confidence(0.73) unknown(0) TCGA-EI-6882-01 10 121551680 121551681 - T INPP5F Frame_Shift_Ins p.W211Lfs*3 0.34 TCGA-EI-6882-01 10 121596542 121596542 C A MCMBP Splice_Site p.X472_splice 0.36 TCGA-EI-6882-01 10 123353376 123353376 A G FGFR2 5'UTR 0.08 TCGA-EI-6882-01 10 123843832 123843832 G A TACC2 Missense_Mutation p.R606H 0.26 benign(0.161) TCGA-EI-6882-01 10 123970582 123970582 C - TACC2 Frame_Shift_Del p.P2216Rfs*30 0.36 TCGA-EI-6882-01 10 124036354 124036354 C T BTBD16 Missense_Mutation p.R23C 0.34 deleterious(0.04) probably_damaging(0.983) TCGA-EI-6882-01 10 124214405 124214405 G A ARMS2 Silent p.K54K 0.39 TCGA-EI-6882-01 10 124711509 124711510 - T C10orf88 Frame_Shift_Ins p.N134Kfs*12 0.31 TCGA-EI-6882-01 10 126100644 126100644 T - OAT Frame_Shift_Del p.T33Qfs*28 0.30 TCGA-EI-6882-01 10 127512153 127512153 C A BCCIP Silent p.A9A 0.08 TCGA-EI-6882-01 10 133948606 133948606 C T JAKMIP3 Missense_Mutation p.A304V 0.37 deleterious(0.01) benign(0.177) TCGA-EI-6882-01 10 133963536 133963536 C T JAKMIP3 Silent p.N666N 0.44 TCGA-EI-6882-01 10 135011983 135011983 G A KNDC1 Silent p.A683A 0.49 TCGA-EI-6882-01 10 135350614 135350614 C A CYP2E1 Missense_Mutation p.P339T 0.38 deleterious(0) probably_damaging(0.949) TCGA-EI-6882-01 10 17363321 17363321 T - ST8SIA6 Frame_Shift_Del p.A252Pfs*53 0.25 TCGA-EI-6882-01 10 18823074 18823074 C T CACNB2 Missense_Mutation p.A375V 0.38 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 10 18827244 18827244 T C CACNB2 Silent p.L480L 0.25 TCGA-EI-6882-01 10 22896891 22896891 G A PIP4K2A Missense_Mutation p.R102W 0.34 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 10 26385320 26385320 A C MYO3A Missense_Mutation p.N525H 0.40 deleterious(0) probably_damaging(0.995) TCGA-EI-6882-01 10 28906600 28906600 C T WAC Silent p.R587R 0.12 TCGA-EI-6882-01 10 29782239 29782239 A G SVIL Missense_Mutation p.F1308S 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 10 30728079 30728079 C A MAP3K8 Missense_Mutation p.P71Q 0.30 tolerated_low_confidence(0.5) benign(0.003) TCGA-EI-6882-01 10 33134531 33134531 C T C10ORF68 Missense_Mutation p.T409M 0.33 deleterious(0.01) benign(0.272) TCGA-EI-6882-01 10 38407744 38407744 C T ZNF37A Silent p.N555N 0.33 TCGA-EI-6882-01 10 43285911 43285911 G T BMS1 Missense_Mutation p.K196N 0.32 tolerated(0.05) benign(0.052) TCGA-EI-6882-01 10 43883011 43883011 C T HNRNPF Missense_Mutation p.A108T 0.39 tolerated(0.15) benign(0.097) TCGA-EI-6882-01 10 47000549 47000549 A - GPRIN2 3'UTR 0.17 TCGA-EI-6882-01 10 47087490 47087490 G A NPY4R Missense_Mutation p.R236H 0.20 tolerated(0.13) benign(0.378) TCGA-EI-6882-01 10 50819248 50819248 G A SLC18A3 Silent p.P154P 0.34 TCGA-EI-6882-01 10 51818899 51818899 T G RP11-324H6.5 RNA 0.37 TCGA-EI-6882-01 10 51893219 51893219 C - FAM21A 3'Flank 0.35 TCGA-EI-6882-01 10 54529041 54529041 T C MBL2 Silent p.K113K 0.11 TCGA-EI-6882-01 10 5567182 5567182 C T CALML3 Missense_Mutation p.T45M 0.58 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-EI-6882-01 10 5694924 5694924 C T ASB13 Missense_Mutation p.V45M 0.40 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 10 5948296 5948296 T C FBXO18 Silent p.L203L 0.33 TCGA-EI-6882-01 10 60128572 60128572 T - UBE2D1 3'UTR 0.20 TCGA-EI-6882-01 10 61005239 61005239 T G PHYHIPL Missense_Mutation p.L340R 0.15 deleterious(0) probably_damaging(0.928) TCGA-EI-6882-01 10 62637799 62637799 T C RHOBTB1 Missense_Mutation p.I531M 0.10 deleterious(0.05) possibly_damaging(0.844) TCGA-EI-6882-01 10 63852022 63852022 A G ARID5B Missense_Mutation p.S934G 0.22 tolerated(0.5) benign(0) TCGA-EI-6882-01 10 64573486 64573486 G T EGR2 Silent p.A304A 0.11 TCGA-EI-6882-01 10 64573629 64573629 G A EGR2 Missense_Mutation p.R257W 0.34 deleterious(0) possibly_damaging(0.876) TCGA-EI-6882-01 10 67680207 67680208 - T CTNNA3 Frame_Shift_Ins p.P857Tfs*4 0.28 TCGA-EI-6882-01 10 70139205 70139205 G A RUFY2 Missense_Mutation p.A429V 0.28 tolerated(0.09) benign(0.018) TCGA-EI-6882-01 10 71835502 71835502 C T H2AFY2 Missense_Mutation p.R30C 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 10 72026003 72026003 G A NPFFR1 Missense_Mutation p.A51V 0.35 tolerated(0.82) benign(0.001) TCGA-EI-6882-01 10 72509632 72509632 C T ADAMTS14 Missense_Mutation p.A776V 0.38 tolerated(0.13) benign(0.12) TCGA-EI-6882-01 10 74810919 74810919 A G P4HA1 Silent p.D264D 0.11 TCGA-EI-6882-01 10 74885044 74885044 C T NUDT13 Intron 0.55 TCGA-EI-6882-01 10 74970143 74970143 T C FAM149B1 Missense_Mutation p.V282A 0.34 tolerated(0.13) benign(0.306) TCGA-EI-6882-01 10 75301468 75301468 G A USP54 Nonsense_Mutation p.R201* 0.40 TCGA-EI-6882-01 10 75558819 75558819 C T ZSWIM8 Silent p.G1412G 0.25 TCGA-EI-6882-01 10 7841803 7841803 C T ATP5C1 Missense_Mutation p.A166V 0.41 tolerated(0.1) benign(0.243) TCGA-EI-6882-01 10 78761238 78761238 G A KCNMA1 Intron 0.39 TCGA-EI-6882-01 10 79613160 79613160 G A DLG5 Silent p.H272H 0.10 TCGA-EI-6882-01 10 88492652 88492652 T C LDB3 Silent p.H706H 0.27 TCGA-EI-6882-01 10 90697868 90697868 G A ACTA2 Nonsense_Mutation p.R314* 0.11 TCGA-EI-6882-01 10 91144173 91144173 G A IFIT1B Missense_Mutation p.R368H 0.39 tolerated(0.22) benign(0.009) TCGA-EI-6882-01 10 95718424 95718425 - C PIPSL RNA 0.21 TCGA-EI-6882-01 10 95993896 95993896 C T PLCE1 Missense_Mutation p.H681Y 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6882-01 10 99338293 99338293 G A ANKRD2 Silent p.A156A 0.40 TCGA-EI-6882-01 10 99639495 99639496 - GA CRTAC1 Intron 0.41 TCGA-EI-6882-01 10 99968449 99968449 C A R3HCC1L Missense_Mutation p.P193H 0.24 deleterious(0) possibly_damaging(0.632) TCGA-EI-6882-01 11 100996872 100996872 C T PGR Missense_Mutation p.S552N 0.10 tolerated(0.07) benign(0.115) TCGA-EI-6882-01 11 1018545 1018545 G A MUC6 Missense_Mutation p.T1419I 0.35 unknown(0) TCGA-EI-6882-01 11 1019424 1019424 G A MUC6 Missense_Mutation p.S1294L 0.39 unknown(0) TCGA-EI-6882-01 11 102465475 102465475 G A MMP20 Missense_Mutation p.R323W 0.36 deleterious(0) benign(0.352) TCGA-EI-6882-01 11 1025846 1025846 A G MUC6 Missense_Mutation p.S920P 0.28 unknown(0) TCGA-EI-6882-01 11 1031675 1031675 C T MUC6 Missense_Mutation p.V139M 0.28 unknown(0) TCGA-EI-6882-01 11 103178484 103178484 G A DYNC2H1 Missense_Mutation p.R3813H 0.39 probably_damaging(0.997) TCGA-EI-6882-01 11 108117799 108117799 G A ATM Missense_Mutation p.R337H 0.48 deleterious(0.02) probably_damaging(0.995) TCGA-EI-6882-01 11 10820934 10820935 - G EIF4G2 Frame_Shift_Ins p.S788Qfs*3 0.31 TCGA-EI-6882-01 11 111166862 111166862 T C COLCA1 Silent p.K114K 0.14 TCGA-EI-6882-01 11 111430824 111430824 C T LAYN Missense_Mutation p.R264W 0.10 deleterious(0.02) benign(0.022) TCGA-EI-6882-01 11 113085101 113085101 A T NCAM1 Missense_Mutation p.K368N 0.24 tolerated(0.13) benign(0.034) TCGA-EI-6882-01 11 113711350 113711350 G A USP28 Silent p.G168G 0.24 TCGA-EI-6882-01 11 113934294 113934294 C T ZBTB16 Missense_Mutation p.T91M 0.37 deleterious(0) probably_damaging(0.982) TCGA-EI-6882-01 11 116693973 116693973 C T APOA4 5'UTR 0.36 TCGA-EI-6882-01 11 117335745 117335745 C T DSCAML1 Missense_Mutation p.A1120T 0.28 tolerated(1) benign(0.103) TCGA-EI-6882-01 11 117376185 117376185 G A DSCAML1 Silent p.R742R 0.36 TCGA-EI-6882-01 11 118047235 118047235 A - SCN2B 5'UTR 0.45 TCGA-EI-6882-01 11 118076606 118076606 C T AMICA1 Silent p.R175R 0.08 TCGA-EI-6882-01 11 118764908 118764908 C T CXCR5 Nonsense_Mutation p.R219* 0.37 TCGA-EI-6882-01 11 119216225 119216225 T C MFRP Missense_Mutation p.I182M 0.18 deleterious(0) probably_damaging(0.933) TCGA-EI-6882-01 11 120298810 120298810 C T ARHGEF12 Missense_Mutation p.R147C 0.45 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 11 121032949 121032949 C T TECTA Silent p.Y1714Y 0.42 TCGA-EI-6882-01 11 121174117 121174117 T - SC5D Frame_Shift_Del p.F13Lfs*23 0.24 TCGA-EI-6882-01 11 123484265 123484265 G A GRAMD1B Missense_Mutation p.R566H 0.28 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 11 123909364 123909364 T C OR10G7 Silent p.T115T 0.11 TCGA-EI-6882-01 11 124294231 124294231 G A OR8B4 Silent p.D179D 0.27 TCGA-EI-6882-01 11 125875676 125875676 G A CDON Missense_Mutation p.A610V 0.40 tolerated(0.05) possibly_damaging(0.85) TCGA-EI-6882-01 11 126132102 126132102 T G FAM118B 3'UTR 0.36 TCGA-EI-6882-01 11 126135225 126135225 G A SRPR Missense_Mutation p.R417C 0.10 deleterious(0.02) benign(0.066) TCGA-EI-6882-01 11 126137087 126137087 T C SRPR Missense_Mutation p.K170R 0.28 tolerated(0.12) benign(0.108) TCGA-EI-6882-01 11 126213259 126213259 G A DCPS Missense_Mutation p.D232N 0.35 deleterious(0) probably_damaging(0.976) TCGA-EI-6882-01 11 128838991 128838991 G A ARHGAP32 Silent p.N2025N 0.38 TCGA-EI-6882-01 11 129830837 129830837 G A PRDM10 Missense_Mutation p.S8L 0.17 deleterious_low_confidence(0.04) benign(0.023) TCGA-EI-6882-01 11 130289154 130289154 G A ADAMTS8 Nonsense_Mutation p.R252* 0.34 TCGA-EI-6882-01 11 132290138 132290138 A C OPCML Silent p.A329A 0.31 TCGA-EI-6882-01 11 133801986 133801986 G A IGSF9B Missense_Mutation p.R364C 0.46 tolerated(0.05) possibly_damaging(0.729) TCGA-EI-6882-01 11 14317366 14317366 T G RRAS2 Missense_Mutation p.E48D 0.36 deleterious(0) possibly_damaging(0.834) TCGA-EI-6882-01 11 17409638 17409638 T C KCNJ11 Translation_Start_Site p.M1? 0.42 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-EI-6882-01 11 17544992 17544992 C A USH1C Missense_Mutation p.D265Y 0.44 deleterious(0) probably_damaging(0.978) TCGA-EI-6882-01 11 1782676 1782676 A G CTSD Missense_Mutation p.S31P 0.40 deleterious(0.01) benign(0.35) TCGA-EI-6882-01 11 18042689 18042689 C T TPH1 Missense_Mutation p.R395H 0.38 deleterious(0) probably_damaging(0.969) TCGA-EI-6882-01 11 18497014 18497014 G A LDHAL6A Silent p.V140V 0.38 TCGA-EI-6882-01 11 209870 209870 C T RIC8A Missense_Mutation p.T199M 0.67 deleterious(0.03) possibly_damaging(0.843) TCGA-EI-6882-01 11 21250897 21250897 C T NELL1 Silent p.S482S 0.49 TCGA-EI-6882-01 11 2324119 2324119 G - TSPAN32 Frame_Shift_Del p.A39Pfs*28 0.26 TCGA-EI-6882-01 11 2424922 2424922 G - TSSC4 3'UTR 0.31 TCGA-EI-6882-01 11 27679666 27679666 G A BDNF Missense_Mutation p.T231M 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6882-01 11 28311905 28311905 G A METTL15 Missense_Mutation p.R187Q 0.39 tolerated(0.41) benign(0.022) TCGA-EI-6882-01 11 2991118 2991118 G A NAP1L4 Missense_Mutation p.T150M 0.44 tolerated(0.11) possibly_damaging(0.759) TCGA-EI-6882-01 11 30034655 30034655 A T KCNA4 5'UTR 0.21 TCGA-EI-6882-01 11 3688593 3688593 G A CHRNA10 Missense_Mutation p.P255L 0.29 tolerated(1) benign(0.131) TCGA-EI-6882-01 11 40137449 40137449 A C LRRC4C Missense_Mutation p.F132V 0.38 deleterious(0.02) probably_damaging(0.955) TCGA-EI-6882-01 11 433453 433453 G A ANO9 Missense_Mutation p.R71W 0.37 deleterious(0) possibly_damaging(0.517) TCGA-EI-6882-01 11 46914551 46914551 C A LRP4 Missense_Mutation p.R557L 0.55 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 11 47436617 47436617 C T SLC39A13 Missense_Mutation p.T316M 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-EI-6882-01 11 5152919 5152919 C T OR52A5 3'Flank 0.45 TCGA-EI-6882-01 11 5173451 5173451 A G OR52A1 Missense_Mutation p.I50T 0.10 tolerated(0.09) benign(0.007) TCGA-EI-6882-01 11 5345185 5345185 C T OR51B2 Missense_Mutation p.A115T 0.37 tolerated(0.06) benign(0.063) TCGA-EI-6882-01 11 5537635 5537635 G A UBQLNL Nonsense_Mutation p.Q13* 0.44 TCGA-EI-6882-01 11 56020329 56020329 T C OR5T3 Silent p.S218S 0.15 TCGA-EI-6882-01 11 5626762 5626762 C T TRIM6 Missense_Mutation p.R267C 0.24 tolerated(0.12) benign(0.094) TCGA-EI-6882-01 11 56510750 56510750 G A OR9G4 Missense_Mutation p.R180C 0.36 deleterious(0.05) benign(0.103) TCGA-EI-6882-01 11 57313798 57313798 G A SMTNL1 Missense_Mutation p.R407Q 0.39 deleterious(0.04) possibly_damaging(0.678) TCGA-EI-6882-01 11 5841921 5841921 T C OR52N2 Missense_Mutation p.L119P 0.13 tolerated(0.09) benign(0.32) TCGA-EI-6882-01 11 60165324 60165324 G T MS4A14 Splice_Site p.X47_splice 0.27 TCGA-EI-6882-01 11 60183594 60183594 A G MS4A14 Missense_Mutation p.M418V 0.27 tolerated(0.23) benign(0.005) TCGA-EI-6882-01 11 608730 608730 C T PHRF1 Missense_Mutation p.R1091W 0.54 deleterious(0.01) probably_damaging(0.942) TCGA-EI-6882-01 11 61094297 61094297 A G DDB1 Silent p.P206P 0.12 TCGA-EI-6882-01 11 61178567 61178567 G A CPSF7 Missense_Mutation p.R465C 0.21 deleterious(0) probably_damaging(0.983) TCGA-EI-6882-01 11 62302513 62302513 G A AHNAK Missense_Mutation p.R102C 0.45 possibly_damaging(0.729) TCGA-EI-6882-01 11 62520515 62520515 G A ZBTB3 Missense_Mutation p.R258W 0.25 deleterious(0.02) possibly_damaging(0.517) TCGA-EI-6882-01 11 6292693 6292693 G A CCKBR Missense_Mutation p.D422N 0.36 tolerated(0.08) benign(0.002) TCGA-EI-6882-01 11 63743706 63743706 G A COX8A Missense_Mutation p.V42I 0.31 tolerated(1) benign(0) TCGA-EI-6882-01 11 63987392 63987392 G A FERMT3 Missense_Mutation p.R374H 0.41 deleterious(0) possibly_damaging(0.763) TCGA-EI-6882-01 11 64082556 64082556 C T ESRRA Missense_Mutation p.R276C 0.49 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 11 64402894 64402894 C - NRXN2 Frame_Shift_Del p.G1145Efs*58 0.30 TCGA-EI-6882-01 11 64428581 64428581 G A NRXN2 Missense_Mutation p.P610L 0.44 deleterious(0) benign(0.031) TCGA-EI-6882-01 11 64460333 64460333 G A NRXN2 Missense_Mutation p.T255M 0.36 tolerated(1) benign(0.052) TCGA-EI-6882-01 11 64521023 64521023 C T PYGM Silent p.A457A 0.32 TCGA-EI-6882-01 11 64525794 64525794 A G PYGM Missense_Mutation p.L151P 0.15 deleterious(0) probably_damaging(0.979) TCGA-EI-6882-01 11 64662649 64662649 G A ATG2A Silent p.D1871D 0.53 TCGA-EI-6882-01 11 6470271 6470271 C T TRIM3 Missense_Mutation p.R741H 0.37 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 11 65111285 65111285 C T DPF2 Missense_Mutation p.R179C 0.44 deleterious(0) possibly_damaging(0.847) TCGA-EI-6882-01 11 65386302 65386302 G A PCNXL3 Missense_Mutation p.R490Q 0.51 deleterious(0.03) probably_damaging(0.998) TCGA-EI-6882-01 11 65487933 65487933 G A RNASEH2C Intron 0.40 TCGA-EI-6882-01 11 6579006 6579006 G - DNHD1 Frame_Shift_Del p.P2829Lfs*17 0.28 TCGA-EI-6882-01 11 66055090 66055090 C T YIF1A Missense_Mutation p.A136T 0.26 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 11 66055104 66055105 - G YIF1A Frame_Shift_Ins p.R131Pfs*8 0.35 TCGA-EI-6882-01 11 66311227 66311227 C T ZDHHC24 Silent p.T169T 0.46 TCGA-EI-6882-01 11 6631411 6631411 C T ILK Missense_Mutation p.R371C 0.35 deleterious(0.05) benign(0.093) TCGA-EI-6882-01 11 66322664 66322664 C T CTD-3074O7.2 3'Flank 0.44 TCGA-EI-6882-01 11 66332113 66332113 G A CTSF Missense_Mutation p.R413C 0.25 deleterious(0.01) probably_damaging(0.929) TCGA-EI-6882-01 11 66454993 66454993 C T SPTBN2 Silent p.P2209P 0.56 TCGA-EI-6882-01 11 66478212 66478212 C T SPTBN2 Missense_Mutation p.R305H 0.33 deleterious(0.02) possibly_damaging(0.781) TCGA-EI-6882-01 11 6648756 6648756 C T DCHS1 Silent p.T1838T 0.34 TCGA-EI-6882-01 11 6653385 6653385 G T DCHS1 Missense_Mutation p.P1120T 0.09 tolerated(0.09) benign(0.094) TCGA-EI-6882-01 11 66833395 66833395 A G RHOD Missense_Mutation p.Y54C 0.38 deleterious(0.01) possibly_damaging(0.732) TCGA-EI-6882-01 11 67267872 67267872 G A PITPNM1 Missense_Mutation p.R221W 0.51 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 11 67274420 67274420 G A CDK2AP2 Missense_Mutation p.T126M 0.11 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 11 67378475 67378475 G A NDUFV1 Missense_Mutation p.G237D 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-EI-6882-01 11 67410303 67410303 G A ACY3 Silent p.N284N 0.55 TCGA-EI-6882-01 11 67789317 67789317 C T ALDH3B1 Silent p.S307S 0.44 TCGA-EI-6882-01 11 68154016 68154016 C T LRP5 Silent p.N416N 0.45 TCGA-EI-6882-01 11 68181348 68181348 C T LRP5 Missense_Mutation p.R899C 0.34 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 11 68197060 68197060 C T LRP5 Missense_Mutation p.R1219C 0.20 deleterious(0.04) possibly_damaging(0.696) TCGA-EI-6882-01 11 68321613 68321613 C T PPP6R3 Nonsense_Mutation p.R207* 0.40 TCGA-EI-6882-01 11 71726513 71726513 T C NUMA1 Missense_Mutation p.Q679R 0.09 benign(0.03) TCGA-EI-6882-01 11 71819850 71819850 G A LRTOMT Missense_Mutation p.R252H 0.39 tolerated(0.36) probably_damaging(0.998) TCGA-EI-6882-01 11 71939199 71939199 G - INPPL1 Intron 0.20 TCGA-EI-6882-01 11 72396674 72396674 G A ARAP1 3'UTR 0.17 TCGA-EI-6882-01 11 72421558 72421558 C T ARAP1 Missense_Mutation p.A430T 0.55 tolerated(0.26) benign(0.001) TCGA-EI-6882-01 11 72539459 72539459 C A ATG16L2 Missense_Mutation p.L510I 0.42 tolerated(0.32) benign(0.217) TCGA-EI-6882-01 11 73106161 73106161 G A RELT Missense_Mutation p.R359Q 0.45 deleterious(0.01) probably_damaging(0.951) TCGA-EI-6882-01 11 7324341 7324341 G A SYT9 Missense_Mutation p.V73I 0.29 deleterious(0) possibly_damaging(0.741) TCGA-EI-6882-01 11 73957246 73957246 G T PPME1 Missense_Mutation p.L320F 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 11 74058282 74058282 G A PGM2L1 Missense_Mutation p.P284S 0.14 deleterious(0.05) probably_damaging(1) TCGA-EI-6882-01 11 74414439 74414439 C T CHRDL2 Missense_Mutation p.R286H 0.12 tolerated(0.58) benign(0.003) TCGA-EI-6882-01 11 76831867 76831867 C T CAPN5 Missense_Mutation p.R467C 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-EI-6882-01 11 7686490 7686490 C T CYB5R2 3'UTR 0.38 TCGA-EI-6882-01 11 8413974 8413974 C A STK33 3'UTR 0.38 TCGA-EI-6882-01 11 89443564 89443564 G A TRIM77 Missense_Mutation p.R33K 0.39 tolerated(0.05) benign(0.423) TCGA-EI-6882-01 11 92498151 92498151 A C FAT3 Missense_Mutation p.E1364A 0.20 possibly_damaging(0.576) TCGA-EI-6882-01 12 100043209 100043209 A T FAM71C 3'UTR 0.37 TCGA-EI-6882-01 12 106532327 106532327 C T NUAK1 Silent p.E35E 0.29 TCGA-EI-6882-01 12 108135031 108135031 G T PRDM4 Missense_Mutation p.P539H 0.37 deleterious(0.02) probably_damaging(0.998) TCGA-EI-6882-01 12 108685672 108685672 C T CMKLR1 Missense_Mutation p.M356I 0.45 tolerated(0.22) benign(0.004) TCGA-EI-6882-01 12 108985920 108985920 G - TMEM119 Frame_Shift_Del p.T81Pfs*7 0.25 TCGA-EI-6882-01 12 109677661 109677661 C T ACACB Silent p.N1563N 0.17 TCGA-EI-6882-01 12 110385105 110385105 G A GIT2 Missense_Mutation p.R533C 0.35 tolerated(0.16) benign(0.3) TCGA-EI-6882-01 12 112600860 112600860 G - HECTD4 Frame_Shift_Del p.P4223Qfs*21 0.29 TCGA-EI-6882-01 12 113617007 113617007 C T DDX54 Missense_Mutation p.A169T 0.26 deleterious(0.01) possibly_damaging(0.542) TCGA-EI-6882-01 12 113629407 113629407 T C RITA1 Missense_Mutation p.S199P 0.38 deleterious(0) probably_damaging(0.978) TCGA-EI-6882-01 12 113825632 113825632 G A PLBD2 Missense_Mutation p.R508H 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 12 115112105 115112105 C A TBX3 Silent p.T545T 0.17 TCGA-EI-6882-01 12 115117749 115117749 G A TBX3 Missense_Mutation p.T229M 0.45 deleterious_low_confidence(0.01) benign(0.207) TCGA-EI-6882-01 12 118597952 118597952 G A TAOK3 Missense_Mutation p.A784V 0.38 deleterious(0.01) possibly_damaging(0.588) TCGA-EI-6882-01 12 119631557 119631557 G A HSPB8 Missense_Mutation p.G162D 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 12 12022747 12022747 G A ETV6 Missense_Mutation p.V285M 0.50 tolerated(0.4) benign(0.009) TCGA-EI-6882-01 12 120899807 120899807 T G SRSF9 3'UTR 0.47 TCGA-EI-6882-01 12 121708745 121708745 A C CAMKK2 Missense_Mutation p.C159G 0.36 tolerated(0.16) benign(0.004) TCGA-EI-6882-01 12 122468643 122468643 C T BCL7A Nonsense_Mutation p.R44* 0.41 TCGA-EI-6882-01 12 122723193 122723193 C T VPS33A Missense_Mutation p.V415M 0.41 tolerated(0.07) benign(0.105) TCGA-EI-6882-01 12 122763466 122763466 G A CLIP1 Silent p.N1263N 0.36 TCGA-EI-6882-01 12 123252056 123252056 A - DENR Frame_Shift_Del p.K108Rfs*10 0.18 TCGA-EI-6882-01 12 123424729 123424729 G - ABCB9 Frame_Shift_Del p.L558Wfs*24 0.23 TCGA-EI-6882-01 12 123467115 123467115 C - ARL6IP4 Intron 0.28 TCGA-EI-6882-01 12 124228458 124228458 G A ATP6V0A2 Missense_Mutation p.G389R 0.39 deleterious(0) probably_damaging(0.96) TCGA-EI-6882-01 12 124235754 124235754 G A ATP6V0A2 Missense_Mutation p.R678H 0.29 tolerated(0.12) benign(0.011) TCGA-EI-6882-01 12 124827555 124827555 G A NCOR2 Silent p.D1644D 0.50 TCGA-EI-6882-01 12 124885064 124885065 - G NCOR2 Frame_Shift_Ins p.Q599Pfs*13 0.09 TCGA-EI-6882-01 12 129181895 129181895 G A TMEM132C Missense_Mutation p.A686T 0.26 tolerated(0.21) benign(0.002) TCGA-EI-6882-01 12 130184704 130184705 - G TMEM132D Frame_Shift_Ins p.T207Hfs*29 0.38 TCGA-EI-6882-01 12 130827177 130827177 G A PIWIL1 Missense_Mutation p.R14H 0.46 tolerated(0.3) benign(0.133) TCGA-EI-6882-01 12 130926460 130926460 C T RIMBP2 Silent p.P462P 0.50 TCGA-EI-6882-01 12 131439172 131439172 C T GPR133 Missense_Mutation p.R24C 0.40 tolerated_low_confidence(0.19) benign(0.002) TCGA-EI-6882-01 12 131569202 131569202 G A GPR133 Silent p.P555P 0.44 TCGA-EI-6882-01 12 133198422 133198422 C T P2RX2 Missense_Mutation p.A453V 0.12 deleterious_low_confidence(0.01) benign(0.153) TCGA-EI-6882-01 12 133244133 133244133 G A POLE Missense_Mutation p.R759C 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 12 133294699 133294699 G A PGAM5 Missense_Mutation p.V238M 0.11 deleterious(0.02) probably_damaging(0.989) TCGA-EI-6882-01 12 133372653 133372653 C T GOLGA3 Missense_Mutation p.A752T 0.27 deleterious(0.04) possibly_damaging(0.856) TCGA-EI-6882-01 12 133385137 133385137 T C GOLGA3 Splice_Site p.X174_splice 0.10 TCGA-EI-6882-01 12 13717360 13717360 G A GRIN2B Missense_Mutation p.R938C 0.41 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.51 deleterious(0) benign(0.361) TCGA-EI-6882-01 12 2788672 2788672 C - CACNA1C Frame_Shift_Del p.Q1768Rfs*120 0.27 TCGA-EI-6882-01 12 30792446 30792446 T C IPO8 Intron 0.31 TCGA-EI-6882-01 12 31605345 31605345 G A DENND5B Silent p.F386F 0.26 TCGA-EI-6882-01 12 40645056 40645056 A C LRRK2 Missense_Mutation p.Q327H 0.11 tolerated(0.09) benign(0.125) TCGA-EI-6882-01 12 40921877 40921877 T C MUC19 Intron 0.41 TCGA-EI-6882-01 12 45568397 45568397 C A PLEKHA8P1 RNA 0.07 TCGA-EI-6882-01 12 4722841 4722841 G A DYRK4 Silent p.A495A 0.37 TCGA-EI-6882-01 12 49431709 49431709 C T KMT2D Missense_Mutation p.A3144T 0.21 possibly_damaging(0.657) TCGA-EI-6882-01 12 50480543 50480543 G A SMARCD1 Missense_Mutation p.R138H 0.40 deleterious(0.03) benign(0.068) TCGA-EI-6882-01 12 50747821 50747821 T - FAM186A Frame_Shift_Del p.M932* 0.29 TCGA-EI-6882-01 12 50860854 50860854 T - LARP4 Frame_Shift_Del p.L500Wfs*21 0.26 TCGA-EI-6882-01 12 52345514 52345514 C T ACVR1B 5'UTR 0.12 TCGA-EI-6882-01 12 52387937 52387937 C T ACVR1B 3'UTR 0.29 TCGA-EI-6882-01 12 52695769 52695769 C T KRT86 Silent p.G23G 0.33 TCGA-EI-6882-01 12 53242469 53242470 - C KRT78 Frame_Shift_Ins p.I83Hfs*17 0.34 TCGA-EI-6882-01 12 53292662 53292662 T C KRT8 Missense_Mutation p.I363V 0.33 tolerated(0.09) benign(0.041) TCGA-EI-6882-01 12 53452137 53452137 G A TENC1 Missense_Mutation p.R388Q 0.23 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 12 53670437 53670437 G A ESPL1 Silent p.P578P 0.45 TCGA-EI-6882-01 12 53819644 53819645 - G AMHR2 Frame_Shift_Ins p.P268Sfs*30 0.36 TCGA-EI-6882-01 12 55420235 55420235 T G NEUROD4 Silent p.T4T 0.42 TCGA-EI-6882-01 12 55641155 55641155 C - OR6C74 Frame_Shift_Del p.L29Ffs*7 0.09 TCGA-EI-6882-01 12 56349607 56349607 G A PMEL Silent p.S504S 0.34 TCGA-EI-6882-01 12 56478854 56478854 G A ERBB3 Missense_Mutation p.V104M 0.49 deleterious(0.05) possibly_damaging(0.789) TCGA-EI-6882-01 12 56548982 56548982 G A MYL6B Missense_Mutation p.E116K 0.25 deleterious(0) probably_damaging(0.929) TCGA-EI-6882-01 12 56641901 56641901 G A ANKRD52 Silent p.R628R 0.44 TCGA-EI-6882-01 12 57106613 57106613 C T NACA Missense_Mutation p.R907Q 0.27 deleterious_low_confidence(0.04) benign(0.082) TCGA-EI-6882-01 12 57554894 57554894 G A LRP1 Missense_Mutation p.R733Q 0.30 possibly_damaging(0.889) TCGA-EI-6882-01 12 57572285 57572285 C A LRP1 Missense_Mutation p.A1502D 0.16 possibly_damaging(0.698) TCGA-EI-6882-01 12 57578741 57578742 TG - LRP1 Frame_Shift_Del p.F2104* 0.26 TCGA-EI-6882-01 12 57585237 57585237 C T LRP1 Silent p.R2457R 0.23 TCGA-EI-6882-01 12 58223346 58223346 C T CTDSP2 Missense_Mutation p.R33H 0.39 deleterious(0) possibly_damaging(0.908) TCGA-EI-6882-01 12 59307787 59307787 G A LRIG3 Missense_Mutation p.S120L 0.36 tolerated(0.21) benign(0.006) TCGA-EI-6882-01 12 70133434 70133434 G A RAB3IP 5'UTR 0.36 TCGA-EI-6882-01 12 7310297 7310297 C A CLSTN3 Intron 0.46 TCGA-EI-6882-01 12 7473342 7473342 A C ACSM4 Missense_Mutation p.T315P 0.15 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 12 7475131 7475131 G A ACSM4 Silent p.T373T 0.24 TCGA-EI-6882-01 12 74934920 74934920 G A ATXN7L3B 3'UTR 0.51 TCGA-EI-6882-01 12 7527057 7527057 G A CD163L1 Silent p.D1130D 0.53 TCGA-EI-6882-01 12 77449659 77449659 G A E2F7 Silent p.D115D 0.32 TCGA-EI-6882-01 12 7805293 7805293 G A APOBEC1 Silent p.H61H 0.38 TCGA-EI-6882-01 12 78225330 78225330 G A NAV3 Missense_Mutation p.G30D 0.40 deleterious_low_confidence(0.03) benign(0.416) TCGA-EI-6882-01 12 80184262 80184262 G A PPP1R12A Missense_Mutation p.T884M 0.41 tolerated(0.12) benign(0.001) TCGA-EI-6882-01 12 8048176 8048176 A - NANOGP1 RNA 0.18 TCGA-EI-6882-01 12 80645885 80645885 C T OTOGL Missense_Mutation p.R388W 0.40 deleterious(0) probably_damaging(0.984) TCGA-EI-6882-01 12 81799662 81799662 T C PPFIA2 Silent p.Q222Q 0.41 TCGA-EI-6882-01 12 8386990 8386990 C T RP11-266K4.9 5'Flank 0.36 TCGA-EI-6882-01 12 88588948 88588949 - A TMTC3 Frame_Shift_Ins p.C759Mfs*3 0.26 TCGA-EI-6882-01 12 88974198 88974198 T C KITLG 5'UTR 0.38 TCGA-EI-6882-01 12 9265054 9265054 G A A2M Missense_Mutation p.R117W 0.20 deleterious(0) possibly_damaging(0.772) TCGA-EI-6882-01 12 94243838 94243838 T C CRADD Missense_Mutation p.W131R 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 12 95927451 95927451 C T USP44 Silent p.R194R 0.09 TCGA-EI-6882-01 12 99060041 99060042 TT - APAF1 Frame_Shift_Del p.L424Ifs*3 0.26 TCGA-EI-6882-01 12 99793432 99793432 T C ANKS1B Missense_Mutation p.K578R 0.07 tolerated(0.51) benign(0.081) TCGA-EI-6882-01 13 101710297 101710297 G A NALCN Missense_Mutation p.P1673S 0.56 tolerated(0.2) benign(0.008) TCGA-EI-6882-01 13 101936359 101936359 T G NALCN Missense_Mutation p.E353D 0.19 tolerated(0.53) benign(0.01) TCGA-EI-6882-01 13 113170831 113170831 G A TUBGCP3 Missense_Mutation p.A670V 0.09 deleterious(0) benign(0.364) TCGA-EI-6882-01 13 114202655 114202655 C T TMCO3 Missense_Mutation p.P603L 0.17 deleterious(0) probably_damaging(0.979) TCGA-EI-6882-01 13 20412884 20412887 GAAG - ZMYM5 Frame_Shift_Del p.F276Lfs*11 0.37 TCGA-EI-6882-01 13 23904749 23904749 A C SACS Silent p.P4422P 0.48 TCGA-EI-6882-01 13 24798089 24798089 C - SPATA13 Frame_Shift_Del p.P342Hfs*8 0.24 TCGA-EI-6882-01 13 25914303 25914303 G A NUPL1 3'UTR 0.32 TCGA-EI-6882-01 13 27257005 27257005 G A WASF3 Silent p.S415S 0.43 TCGA-EI-6882-01 13 27332980 27332980 G A GPR12 Missense_Mutation p.R329C 0.14 deleterious(0.01) benign(0.11) TCGA-EI-6882-01 13 28143237 28143237 G A LNX2 Missense_Mutation p.A195V 0.37 tolerated(0.31) benign(0.003) TCGA-EI-6882-01 13 30097591 30097591 G - SLC7A1 Frame_Shift_Del p.V288Wfs*8 0.27 TCGA-EI-6882-01 13 32885441 32885441 C T ZAR1L Missense_Mutation p.A208T 0.20 tolerated(0.18) benign(0.003) TCGA-EI-6882-01 13 32912655 32912656 - T BRCA2 Frame_Shift_Ins p.L1390Ffs*13 0.11 TCGA-EI-6882-01 13 33110832 33110832 G A N4BP2L2 Intron 0.37 TCGA-EI-6882-01 13 35619537 35619537 C T NBEA Missense_Mutation p.A241V 0.34 deleterious(0) possibly_damaging(0.804) TCGA-EI-6882-01 13 35756550 35756550 G A NBEA Silent p.S1572S 0.32 TCGA-EI-6882-01 13 36241567 36241567 C T NBEA Missense_Mutation p.P2820S 0.11 deleterious(0.04) benign(0.437) TCGA-EI-6882-01 13 36886586 36886586 G A SPG20 Silent p.C504C 0.33 TCGA-EI-6882-01 13 39265232 39265232 A G FREM2 Missense_Mutation p.S1251G 0.37 deleterious(0.03) benign(0) TCGA-EI-6882-01 13 39265244 39265244 G A FREM2 Missense_Mutation p.D1255N 0.39 deleterious(0.02) benign(0.027) TCGA-EI-6882-01 13 39587143 39587144 GA - PROSER1 Frame_Shift_Del p.S749Rfs*46 0.25 TCGA-EI-6882-01 13 39587834 39587834 A G PROSER1 Missense_Mutation p.Y519H 0.09 tolerated_low_confidence(0.07) possibly_damaging(0.877) TCGA-EI-6882-01 13 46549820 46549820 C T ZC3H13 Missense_Mutation p.R689Q 0.11 unknown(0) TCGA-EI-6882-01 13 52673888 52673888 C T NEK5 Silent p.K339K 0.36 TCGA-EI-6882-01 13 70293502 70293502 T G KLHL1 Silent p.R672R 0.41 TCGA-EI-6882-01 13 72440446 72440446 G A DACH1 Silent p.S154S 0.23 TCGA-EI-6882-01 13 72440705 72440707 GCC - DACH1 In_Frame_Del p.A68del 0.42 TCGA-EI-6882-01 13 77671669 77671669 T - MYCBP2 Frame_Shift_Del p.K3169Rfs*26 0.28 TCGA-EI-6882-01 13 84454602 84454602 G A SLITRK1 Silent p.C347C 0.43 TCGA-EI-6882-01 13 96589320 96589320 A G UGGT2 Missense_Mutation p.M612T 0.07 deleterious(0.02) benign(0.076) TCGA-EI-6882-01 13 99092476 99092476 C - FARP1 Frame_Shift_Del p.P874Lfs*20 0.32 TCGA-EI-6882-01 13 99520515 99520515 G A DOCK9 Silent p.N1020N 0.40 TCGA-EI-6882-01 14 100135185 100135185 G A HHIPL1 Intron 0.32 TCGA-EI-6882-01 14 101195375 101195375 C T DLK1 Silent p.D78D 0.45 TCGA-EI-6882-01 14 102481460 102481460 G C DYNC1H1 Missense_Mutation p.V2345L 0.33 probably_damaging(0.979) TCGA-EI-6882-01 14 102550296 102550296 G A HSP90AA1 Missense_Mutation p.S513L 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-EI-6882-01 14 103188623 103188623 G A RCOR1 Missense_Mutation p.R430H 0.31 deleterious(0) probably_damaging(0.993) TCGA-EI-6882-01 14 105349592 105349592 C T CEP170B Silent p.H266H 0.29 TCGA-EI-6882-01 14 105350393 105350393 C T CEP170B Missense_Mutation p.P426L 0.40 deleterious(0.04) benign(0.02) TCGA-EI-6882-01 14 105354072 105354072 C T CEP170B Missense_Mutation p.R1166C 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6882-01 14 105518166 105518166 C T GPR132 Missense_Mutation p.R103H 0.41 tolerated(0.11) benign(0.009) TCGA-EI-6882-01 14 106322082 106322082 C T IGHM Missense_Mutation p.G81D 0.36 tolerated(0.39) benign(0.008) TCGA-EI-6882-01 14 106845443 106845443 C T IGHV3-35 Silent p.T77T 0.40 TCGA-EI-6882-01 14 20926840 20926840 G A TMEM55B Missense_Mutation p.R245W 0.20 deleterious(0) benign(0.126) TCGA-EI-6882-01 14 21167775 21167775 G A RNASE4 Missense_Mutation p.R82H 0.35 tolerated(0.13) benign(0.004) TCGA-EI-6882-01 14 21543155 21543155 G A ARHGEF40 Silent p.E422E 0.51 TCGA-EI-6882-01 14 23887594 23887594 C T MYH7 Missense_Mutation p.A1332T 0.48 deleterious(0.01) possibly_damaging(0.666) TCGA-EI-6882-01 14 24567788 24567788 C T PCK2 Missense_Mutation p.R189C 0.45 deleterious(0.01) probably_damaging(0.946) TCGA-EI-6882-01 14 24590169 24590169 G A DCAF11 Nonsense_Mutation p.W405* 0.41 TCGA-EI-6882-01 14 24642168 24642168 G C REC8 Silent p.R62R 0.24 TCGA-EI-6882-01 14 24680711 24680711 C T CHMP4A Missense_Mutation p.R133H 0.35 deleterious(0.02) possibly_damaging(0.534) TCGA-EI-6882-01 14 25078859 25078859 G A GZMH 5'UTR 0.17 TCGA-EI-6882-01 14 31855726 31855726 G A HEATR5A Silent p.A122A 0.32 TCGA-EI-6882-01 14 39545191 39545191 G A SEC23A Missense_Mutation p.S312L 0.30 deleterious(0) possibly_damaging(0.894) TCGA-EI-6882-01 14 39746268 39746268 C T CTAGE5 Missense_Mutation p.S65L 0.39 deleterious(0.04) possibly_damaging(0.515) TCGA-EI-6882-01 14 42356110 42356110 T C LRFN5 Silent p.A94A 0.42 TCGA-EI-6882-01 14 42361086 42361086 A G LRFN5 Silent p.S673S 0.31 TCGA-EI-6882-01 14 47120247 47120247 G T RPL10L 3'UTR 0.35 TCGA-EI-6882-01 14 51245507 51245507 G A NIN Missense_Mutation p.R151C 0.55 tolerated(0.05) possibly_damaging(0.84) TCGA-EI-6882-01 14 53560050 53560050 T - DDHD1 Frame_Shift_Del p.K375Nfs*19 0.28 TCGA-EI-6882-01 14 55818178 55818178 G A FBXO34 Missense_Mutation p.R357H 0.32 tolerated(1) benign(0) TCGA-EI-6882-01 14 57271061 57271061 C T OTX2 Missense_Mutation p.A40T 0.42 tolerated(0.78) benign(0.001) TCGA-EI-6882-01 14 58701424 58701424 C T ACTR10 3'UTR 0.36 TCGA-EI-6882-01 14 59834301 59834301 C T DAAM1 Missense_Mutation p.A1004V 0.47 tolerated(0.06) possibly_damaging(0.54) TCGA-EI-6882-01 14 60923643 60923643 C T C14orf39 Silent p.P450P 0.37 TCGA-EI-6882-01 14 64457810 64457810 G A SYNE2 Missense_Mutation p.G875S 0.33 benign(0.034) TCGA-EI-6882-01 14 64519635 64519635 A - SYNE2 Frame_Shift_Del p.V3004Cfs*7 0.12 TCGA-EI-6882-01 14 64568676 64568676 G A SYNE2 Silent p.S4136S 0.26 TCGA-EI-6882-01 14 64699944 64699944 C T ESR2 Missense_Mutation p.G502R 0.34 deleterious(0.02) possibly_damaging(0.689) TCGA-EI-6882-01 14 64727258 64727258 C T ESR2 Silent p.A287A 0.36 TCGA-EI-6882-01 14 65008372 65008372 G A HSPA2 Missense_Mutation p.A269T 0.28 deleterious_low_confidence(0) possibly_damaging(0.716) TCGA-EI-6882-01 14 65220354 65220354 G A SPTB Missense_Mutation p.T2168M 0.45 deleterious(0.01) probably_damaging(0.92) TCGA-EI-6882-01 14 65511155 65511155 G A FNTB Missense_Mutation p.A317T 0.40 tolerated(0.48) benign(0) TCGA-EI-6882-01 14 68028932 68028932 C T PLEKHH1 Missense_Mutation p.P195L 0.34 tolerated_low_confidence(0.1) benign(0.004) TCGA-EI-6882-01 14 73437808 73437808 C T ZFYVE1 Missense_Mutation p.A706T 0.29 tolerated(0.38) benign(0.025) TCGA-EI-6882-01 14 73731401 73731401 C A PAPLN Missense_Mutation p.A1004D 0.16 tolerated(0.06) possibly_damaging(0.522) TCGA-EI-6882-01 14 73959502 73959502 C T HEATR4 Intron 0.21 TCGA-EI-6882-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.31 TCGA-EI-6882-01 14 74327290 74327290 A G PTGR2 Missense_Mutation p.Y29C 0.28 tolerated(0.06) benign(0.009) TCGA-EI-6882-01 14 75130372 75130372 C T AREL1 3'UTR 0.53 TCGA-EI-6882-01 14 77750142 77750142 G A POMT2 Missense_Mutation p.R551W 0.33 deleterious(0.03) benign(0.006) TCGA-EI-6882-01 14 91341587 91341587 C A RPS6KA5 Missense_Mutation p.A652S 0.38 tolerated(0.24) benign(0.223) TCGA-EI-6882-01 14 92477356 92477357 - T TRIP11 Frame_Shift_Ins p.E430Rfs*22 0.09 TCGA-EI-6882-01 14 92624055 92624055 A - CPSF2 Frame_Shift_Del p.I552Sfs*5 0.14 TCGA-EI-6882-01 14 95662949 95662949 T - CLMN Frame_Shift_Del p.K865Rfs*10 0.36 TCGA-EI-6882-01 14 97342457 97342457 C T VRK1 Missense_Mutation p.R387C 0.30 tolerated(0.05) benign(0.005) TCGA-EI-6882-01 14 99977026 99977026 C - CCNK Frame_Shift_Del p.P552Lfs*28 0.32 TCGA-EI-6882-01 15 100871107 100871107 G A ADAMTS17 Silent p.C201C 0.41 TCGA-EI-6882-01 15 101464891 101464891 G T LRRK1 Missense_Mutation p.E18D 0.33 tolerated_low_confidence(0.12) benign(0.093) TCGA-EI-6882-01 15 101586288 101586288 C T LRRK1 Silent p.F1022F 0.45 TCGA-EI-6882-01 15 22929730 22929730 G A CYFIP1 Missense_Mutation p.R135H 0.29 tolerated(0.07) possibly_damaging(0.701) TCGA-EI-6882-01 15 23299693 23299693 G A HERC2P2 RNA 0.33 TCGA-EI-6882-01 15 27128500 27128500 T C GABRA5 Missense_Mutation p.V98A 0.62 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 15 34130273 34130273 G A RYR3 Missense_Mutation p.R4031H 0.57 probably_damaging(0.999) TCGA-EI-6882-01 15 34356093 34356093 A G CHRM5 Missense_Mutation p.E392G 0.08 tolerated(0.31) benign(0.16) TCGA-EI-6882-01 15 35273599 35273599 T C ZNF770 Silent p.R679R 0.14 TCGA-EI-6882-01 15 42564318 42564318 T C TMEM87A Missense_Mutation p.K50E 0.65 tolerated(0.32) benign(0.002) TCGA-EI-6882-01 15 43513056 43513056 G A EPB42 5'UTR 0.70 TCGA-EI-6882-01 15 43621644 43621644 G A LCMT2 Silent p.S348S 0.52 TCGA-EI-6882-01 15 45007873 45007874 TG - B2M Frame_Shift_Del p.L107Ffs*7 0.45 TCGA-EI-6882-01 15 48059277 48059277 C T SEMA6D Silent p.G584G 0.38 TCGA-EI-6882-01 15 50906321 50906321 C T TRPM7 Missense_Mutation p.R545Q 0.23 tolerated(0.14) probably_damaging(0.98) TCGA-EI-6882-01 15 51350219 51350219 G A TNFAIP8L3 Silent p.H246H 0.30 TCGA-EI-6882-01 15 59146730 59146730 A G FAM63B Missense_Mutation p.N596S 0.09 tolerated(0.83) possibly_damaging(0.899) TCGA-EI-6882-01 15 62246721 62246721 A G VPS13C Missense_Mutation p.S1400P 0.12 tolerated(0.28) benign(0.002) TCGA-EI-6882-01 15 63076010 63076010 T C TLN2 Missense_Mutation p.L1886P 0.09 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 15 65347311 65347311 C T RASL12 Missense_Mutation p.V243M 0.31 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 15 65491077 65491077 C T CILP Missense_Mutation p.R516H 0.29 tolerated(0.08) probably_damaging(0.996) TCGA-EI-6882-01 15 69072791 69072791 C T ANP32A Missense_Mutation p.D216N 0.33 tolerated_low_confidence(0.14) unknown(0) TCGA-EI-6882-01 15 69548267 69548267 G A GLCE Missense_Mutation p.R41Q 0.38 tolerated_low_confidence(0.51) benign(0.037) TCGA-EI-6882-01 15 70346880 70346880 C T TLE3 Missense_Mutation p.A578T 0.38 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 15 75942891 75942891 C T SNX33 Missense_Mutation p.P483L 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 15 77287845 77287845 C T PSTPIP1 5'UTR 0.56 TCGA-EI-6882-01 15 77770714 77770714 G A HMG20A Missense_Mutation p.V257M 0.32 deleterious(0.01) probably_damaging(0.968) TCGA-EI-6882-01 15 78295786 78295786 C T TBC1D2B Missense_Mutation p.R812Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 15 78917562 78917562 G A CHRNB4 Silent p.C470C 0.45 TCGA-EI-6882-01 15 79051823 79051823 C T ADAMTS7 Silent p.S1667S 0.38 TCGA-EI-6882-01 15 81201588 81201589 CT - KIAA1199 Frame_Shift_Del p.S581Hfs*26 0.31 TCGA-EI-6882-01 15 81239378 81239379 - G KIAA1199 Frame_Shift_Ins p.A1312Gfs*30 0.29 TCGA-EI-6882-01 15 81624895 81624895 G A TMC3 Silent p.S1056S 0.32 TCGA-EI-6882-01 15 83240213 83240213 C T CPEB1 Missense_Mutation p.R87H 0.37 deleterious_low_confidence(0) benign(0.035) TCGA-EI-6882-01 15 83433935 83433935 G A FSD2 Silent p.S601S 0.35 TCGA-EI-6882-01 15 84690161 84690161 G T ADAMTSL3 Splice_Site p.X1425_splice 0.25 TCGA-EI-6882-01 15 85163970 85163970 G A ZSCAN2 Missense_Mutation p.A182T 0.13 tolerated(0.46) benign(0) TCGA-EI-6882-01 15 85370778 85370778 G A ALPK3 Silent p.T284T 0.49 TCGA-EI-6882-01 15 85488057 85488057 T C SLC28A1 Silent p.S611S 0.15 TCGA-EI-6882-01 15 86262337 86262337 G A AKAP13 Missense_Mutation p.R2015H 0.33 deleterious(0) possibly_damaging(0.715) TCGA-EI-6882-01 15 89383359 89383359 G A ACAN Missense_Mutation p.A191T 0.42 deleterious(0) unknown(0) TCGA-EI-6882-01 15 89400204 89400204 C T ACAN Missense_Mutation p.A1463V 0.33 tolerated(0.14) possibly_damaging(0.703) TCGA-EI-6882-01 15 90610883 90610883 C T ZNF710 Missense_Mutation p.R172W 0.35 deleterious_low_confidence(0) possibly_damaging(0.63) TCGA-EI-6882-01 15 93540499 93540499 C T CHD2 Missense_Mutation p.R1251C 0.44 deleterious(0.01) possibly_damaging(0.872) TCGA-EI-6882-01 16 10032356 10032356 G A GRIN2A Missense_Mutation p.T156M 0.33 tolerated(0.11) possibly_damaging(0.548) TCGA-EI-6882-01 16 11367409 11367409 C T PRM3 Missense_Mutation p.G15D 0.17 deleterious_low_confidence(0.02) benign(0.041) TCGA-EI-6882-01 16 14029073 14029073 G A ERCC4 Silent p.A428A 0.46 TCGA-EI-6882-01 16 1416291 1416291 C T UNKL Missense_Mutation p.A665T 0.31 tolerated(0.29) benign(0.023) TCGA-EI-6882-01 16 14989416 14989416 C T NOMO1 Missense_Mutation p.R1195C 0.08 tolerated(0.13) possibly_damaging(0.719) TCGA-EI-6882-01 16 15680594 15680594 G A C16orf45 Missense_Mutation p.A175T 0.10 tolerated(0.28) benign(0.043) TCGA-EI-6882-01 16 15719485 15719485 T G KIAA0430 Missense_Mutation p.K566T 0.21 deleterious(0.03) possibly_damaging(0.863) TCGA-EI-6882-01 16 15841568 15841568 T C MYH11 Missense_Mutation p.D764G 0.41 probably_damaging(1) TCGA-EI-6882-01 16 1817720 1817720 C T MAPK8IP3 Silent p.Y1130Y 0.45 TCGA-EI-6882-01 16 19070832 19070832 T A TMC7 Intron 0.17 TCGA-EI-6882-01 16 1991289 1991289 C T MSRB1 Missense_Mutation p.R58H 0.48 tolerated(0.6) benign(0.001) TCGA-EI-6882-01 16 2030008 2030008 C T NOXO1 Silent p.R197R 0.35 TCGA-EI-6882-01 16 20497932 20497932 G T ACSM2A Missense_Mutation p.G556W 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 16 2161111 2161111 C T PKD1 Missense_Mutation p.G1353S 0.36 probably_damaging(1) TCGA-EI-6882-01 16 22268969 22268969 C T EEF2K Missense_Mutation p.R303C 0.36 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 16 2282234 2282234 G A E4F1 Missense_Mutation p.A160T 0.33 tolerated(0.16) benign(0.013) TCGA-EI-6882-01 16 27456530 27456530 C T IL21R Missense_Mutation p.L240F 0.34 tolerated(0.19) benign(0.104) TCGA-EI-6882-01 16 27459739 27459739 G A IL21R Intron 0.40 TCGA-EI-6882-01 16 27751397 27751397 C T KIAA0556 Silent p.Y593Y 0.53 TCGA-EI-6882-01 16 2818173 2818173 G A SRRM2 Silent p.S2548S 0.37 TCGA-EI-6882-01 16 28847350 28847350 G - ATXN2L Frame_Shift_Del p.Q1002Kfs*95 0.19 TCGA-EI-6882-01 16 28898509 28898509 G T ATP2A1 Splice_Site p.X182_splice 0.12 TCGA-EI-6882-01 16 29816226 29816226 A - KIF22 Frame_Shift_Del p.I592Yfs*5 0.25 TCGA-EI-6882-01 16 30099793 30099793 C T TBX6 Intron 0.37 TCGA-EI-6882-01 16 30369645 30369645 C T TBC1D10B Missense_Mutation p.V683I 0.57 tolerated_low_confidence(0.15) benign(0.028) TCGA-EI-6882-01 16 30736371 30736371 C - SRCAP Frame_Shift_Del p.P1878Hfs*89 0.36 TCGA-EI-6882-01 16 30748759 30748759 A G SRCAP Silent p.V2466V 0.45 TCGA-EI-6882-01 16 31095587 31095587 C T PRSS53 Missense_Mutation p.G499R 0.36 deleterious(0) probably_damaging(0.973) TCGA-EI-6882-01 16 3119393 3119393 G A IL32 3'UTR 0.29 TCGA-EI-6882-01 16 31343092 31343092 C - ITGAM 3'UTR 0.35 TCGA-EI-6882-01 16 31448304 31448304 G A ZNF843 5'UTR 0.32 TCGA-EI-6882-01 16 3340443 3340443 G A ZNF263 Missense_Mutation p.R646Q 0.37 tolerated(0.1) probably_damaging(0.994) TCGA-EI-6882-01 16 422243 422243 G A TMEM8A Missense_Mutation p.S687L 0.11 deleterious(0.03) probably_damaging(0.957) TCGA-EI-6882-01 16 4432309 4432309 C T VASN Silent p.R477R 0.13 TCGA-EI-6882-01 16 4511829 4511829 C T NMRAL1 Silent p.T284T 0.39 TCGA-EI-6882-01 16 46962980 46962980 T C GPT2 3'UTR 0.21 TCGA-EI-6882-01 16 48138148 48138148 A - ABCC12 Frame_Shift_Del p.F935Lfs*8 0.26 TCGA-EI-6882-01 16 48175204 48175204 G A ABCC12 Silent p.S112S 0.33 TCGA-EI-6882-01 16 4911040 4911040 G T UBN1 Missense_Mutation p.Q349H 0.21 tolerated(0.11) possibly_damaging(0.759) TCGA-EI-6882-01 16 4944500 4944500 G - PPL Frame_Shift_Del p.T455Qfs*37 0.30 TCGA-EI-6882-01 16 50368752 50368752 T C BRD7 Missense_Mutation p.T253A 0.10 tolerated(0.12) benign(0.083) TCGA-EI-6882-01 16 56519541 56519541 C T BBS2 Missense_Mutation p.A674T 0.39 tolerated(0.55) benign(0.022) TCGA-EI-6882-01 16 56912999 56912999 C T SLC12A3 Missense_Mutation p.R399C 0.25 deleterious(0) probably_damaging(0.987) TCGA-EI-6882-01 16 58576202 58576202 C T CNOT1 Missense_Mutation p.R1538H 0.44 deleterious(0) possibly_damaging(0.475) TCGA-EI-6882-01 16 61854914 61854914 A G CDH8 Silent p.Y313Y 0.13 TCGA-EI-6882-01 16 66600615 66600615 G A CMTM1 Missense_Mutation p.A67T 0.34 tolerated(0.06) probably_damaging(0.913) TCGA-EI-6882-01 16 67271161 67271161 G A FHOD1 Missense_Mutation p.T325M 0.33 deleterious(0.01) possibly_damaging(0.462) TCGA-EI-6882-01 16 67322226 67322226 G A PLEKHG4 Missense_Mutation p.R1126H 0.36 tolerated(0.34) benign(0) TCGA-EI-6882-01 16 67709568 67709568 G A GFOD2 Silent p.H216H 0.48 TCGA-EI-6882-01 16 67709875 67709875 G A GFOD2 Missense_Mutation p.P114L 0.14 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 16 67877647 67877647 G A THAP11 3'UTR 0.13 TCGA-EI-6882-01 16 67964637 67964637 C T CTRL Missense_Mutation p.V104I 0.32 tolerated(1) benign(0.006) TCGA-EI-6882-01 16 68597117 68597117 T C ZFP90 Missense_Mutation p.S143P 0.10 tolerated(0.36) benign(0.001) TCGA-EI-6882-01 16 69778848 69778848 G A NOB1 Silent p.T299T 0.40 TCGA-EI-6882-01 16 70162730 70162730 C T PDPR Silent p.D135D 0.19 TCGA-EI-6882-01 16 70162948 70162948 C T PDPR Missense_Mutation p.A177V 0.12 deleterious(0.01) probably_damaging(0.95) TCGA-EI-6882-01 16 70698642 70698642 C T MTSS1L Missense_Mutation p.A444T 0.23 tolerated(0.15) benign(0.022) TCGA-EI-6882-01 16 70917950 70917950 G A HYDIN Silent p.N3284N 0.47 TCGA-EI-6882-01 16 72822586 72822586 G - ZFHX3 Frame_Shift_Del p.Q3197Sfs*44 0.34 TCGA-EI-6882-01 16 731890 731890 C - JMJD8 3'UTR 0.19 TCGA-EI-6882-01 16 75513357 75513357 C T CHST6 Missense_Mutation p.A124T 0.25 tolerated(0.28) possibly_damaging(0.791) TCGA-EI-6882-01 16 75602069 75602069 G A GABARAPL2 Silent p.A75A 0.37 TCGA-EI-6882-01 16 77327004 77327004 C T ADAMTS18 Missense_Mutation p.R1053Q 0.30 deleterious(0.02) benign(0.01) TCGA-EI-6882-01 16 77759345 77759345 A G NUDT7 Missense_Mutation p.D18G 0.30 tolerated(0.12) benign(0.206) TCGA-EI-6882-01 16 78466407 78466407 T G WWOX Missense_Mutation p.L272V 0.59 tolerated(0.51) benign(0.001) TCGA-EI-6882-01 16 79634519 79634519 A C MAF 5'UTR 0.38 TCGA-EI-6882-01 16 80718816 80718816 G A CDYL2 Missense_Mutation p.R79C 0.40 deleterious(0.02) probably_damaging(0.993) TCGA-EI-6882-01 16 81819704 81819704 C - PLCG2 Frame_Shift_Del p.E39Sfs*7 0.19 TCGA-EI-6882-01 16 835969 835969 G A RPUSD1 Missense_Mutation p.T307M 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.488) TCGA-EI-6882-01 16 84812650 84812650 G A USP10 Missense_Mutation p.A787T 0.44 tolerated(0.07) possibly_damaging(0.58) TCGA-EI-6882-01 16 85015597 85015597 C T ZDHHC7 Missense_Mutation p.A144T 0.37 tolerated(0.05) benign(0.072) TCGA-EI-6882-01 16 85697156 85697156 C T GSE1 Silent p.F860F 0.40 TCGA-EI-6882-01 16 87377317 87377317 C T FBXO31 Missense_Mutation p.V182I 0.43 deleterious(0.04) probably_damaging(0.996) TCGA-EI-6882-01 16 88495420 88495420 G - ZNF469 Frame_Shift_Del p.G516Afs*22 0.33 TCGA-EI-6882-01 16 88504202 88504203 - G ZNF469 Frame_Shift_Ins p.R3417Afs*58 0.44 TCGA-EI-6882-01 16 88594616 88594616 G A ZFPM1 Missense_Mutation p.A228T 0.36 deleterious(0) probably_damaging(0.925) TCGA-EI-6882-01 16 88744961 88744961 C T SNAI3 Silent p.T258T 0.42 TCGA-EI-6882-01 16 88802648 88802648 G A PIEZO1 Missense_Mutation p.R489C 0.23 tolerated(0.12) possibly_damaging(0.628) TCGA-EI-6882-01 16 89986344 89986344 G A MC1R Silent p.K226K 0.10 TCGA-EI-6882-01 16 90002086 90002086 C T TUBB3 Silent p.T409T 0.35 TCGA-EI-6882-01 17 10248901 10248901 G A MYH13 Silent p.A432A 0.40 TCGA-EI-6882-01 17 10296273 10296273 C T MYH8 Missense_Mutation p.A1780T 0.44 deleterious(0.04) benign(0.258) TCGA-EI-6882-01 17 10546148 10546148 C T MYH3 Missense_Mutation p.E526K 0.39 deleterious(0) possibly_damaging(0.763) TCGA-EI-6882-01 17 11840771 11840771 A G DNAH9 Missense_Mutation p.T4198A 0.15 possibly_damaging(0.491) TCGA-EI-6882-01 17 12656041 12656041 C - MYOCD Frame_Shift_Del p.S481Pfs*18 0.31 TCGA-EI-6882-01 17 13400087 13400087 C T HS3ST3A1 Silent p.T216T 0.21 TCGA-EI-6882-01 17 14110352 14110352 C T COX10 Missense_Mutation p.A385V 0.29 deleterious(0.01) possibly_damaging(0.559) TCGA-EI-6882-01 17 1481570 1481570 G A SLC43A2 Silent p.S466S 0.26 TCGA-EI-6882-01 17 1637421 1637421 G A WDR81 Missense_Mutation p.R1697H 0.26 deleterious(0) probably_damaging(0.969) TCGA-EI-6882-01 17 17494875 17494875 G A PEMT Silent p.C22C 0.22 TCGA-EI-6882-01 17 18058008 18058008 G A MYO15A Silent p.T2721T 0.36 TCGA-EI-6882-01 17 18151144 18151144 T C FLII Missense_Mutation p.T772A 0.37 tolerated(0.08) probably_damaging(0.955) TCGA-EI-6882-01 17 18181522 18181522 C T TOP3A Missense_Mutation p.R765H 0.51 tolerated(0.67) benign(0.001) TCGA-EI-6882-01 17 18881326 18881326 G A FAM83G Silent p.H551H 0.28 TCGA-EI-6882-01 17 19687094 19687094 G A ULK2 Silent p.Y792Y 0.42 TCGA-EI-6882-01 17 20108388 20108388 C T SPECC1 Silent p.P342P 0.09 TCGA-EI-6882-01 17 21319100 21319100 G A KCNJ12 Missense_Mutation p.R149H 0.17 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 17 2264970 2264970 G A SGSM2 Missense_Mutation p.R58H 0.36 deleterious(0) probably_damaging(0.954) TCGA-EI-6882-01 17 2274709 2274709 G A SGSM2 Missense_Mutation p.R526Q 0.40 tolerated(0.13) benign(0.02) TCGA-EI-6882-01 17 25934958 25934958 G A KSR1 Silent p.T556T 0.41 TCGA-EI-6882-01 17 27031016 27031016 G A PROCA1 Missense_Mutation p.R191C 0.43 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 17 27042099 27042099 C A RAB34 Missense_Mutation p.Q242H 0.22 tolerated(0.13) benign(0.269) TCGA-EI-6882-01 17 27285140 27285141 TG - SEZ6 Frame_Shift_Del p.T709Mfs*6 0.32 TCGA-EI-6882-01 17 27493303 27493303 C T MYO18A Missense_Mutation p.R219Q 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.804) TCGA-EI-6882-01 17 27899563 27899563 G A TP53I13 Missense_Mutation p.R306H 0.33 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 17 28543198 28543198 G T SLC6A4 Missense_Mutation p.L292I 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6882-01 17 29557326 29557326 G A NF1 Silent p.T1013T 0.11 TCGA-EI-6882-01 17 2966548 2966548 C A OR1D5 Missense_Mutation p.M118I 0.27 deleterious(0.01) benign(0.077) TCGA-EI-6882-01 17 29857478 29857478 G A RAB11FIP4 Silent p.S596S 0.42 TCGA-EI-6882-01 17 30551639 30551639 G A RHOT1 Missense_Mutation p.V655M 0.37 tolerated_low_confidence(0.5) benign(0.038) TCGA-EI-6882-01 17 32963055 32963055 C T TMEM132E Silent p.L579L 0.34 TCGA-EI-6882-01 17 33521273 33521273 C T SLC35G3 Silent p.P18P 0.25 TCGA-EI-6882-01 17 34182353 34182353 T - C17orf66 Frame_Shift_Del p.N476Tfs*14 0.25 TCGA-EI-6882-01 17 3427633 3427633 T C TRPV3 Missense_Mutation p.I534M 0.47 deleterious(0.02) possibly_damaging(0.864) TCGA-EI-6882-01 17 36634128 36634128 C T ARHGAP23 Silent p.A809A 0.18 TCGA-EI-6882-01 17 36872877 36872877 G A MLLT6 Missense_Mutation p.V432I 0.29 tolerated(0.55) unknown(0) TCGA-EI-6882-01 17 37822318 37822318 C T TCAP Missense_Mutation p.R154C 0.31 deleterious(0) benign(0.023) TCGA-EI-6882-01 17 37829317 37829317 C T PGAP3 Missense_Mutation p.V296I 0.34 tolerated(0.41) benign(0.021) TCGA-EI-6882-01 17 3787703 3787703 G T CAMKK1 Missense_Mutation p.Q127K 0.39 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 17 37947830 37947830 C T IKZF3 Missense_Mutation p.R144H 0.39 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 17 3808579 3808579 C T P2RX1 Missense_Mutation p.V74M 0.27 tolerated(0.27) benign(0.097) TCGA-EI-6882-01 17 38249151 38249151 C T NR1D1 3'UTR 0.36 TCGA-EI-6882-01 17 38445670 38445670 G A CDC6 5'UTR 0.32 TCGA-EI-6882-01 17 3844757 3844757 G A ATP2A3 Silent p.D579D 0.43 TCGA-EI-6882-01 17 38927442 38927442 T C KRT26 Missense_Mutation p.D163G 0.34 deleterious(0) possibly_damaging(0.886) TCGA-EI-6882-01 17 38953458 38953458 C T KRT28 Missense_Mutation p.A256T 0.18 tolerated(1) benign(0.001) TCGA-EI-6882-01 17 39723557 39723557 C T KRT9 Missense_Mutation p.G614R 0.39 unknown(0) TCGA-EI-6882-01 17 39768841 39768841 C T KRT16 Missense_Mutation p.V34I 0.39 tolerated(0.41) unknown(0) TCGA-EI-6882-01 17 39847087 39847087 G T EIF1 3'UTR 0.41 TCGA-EI-6882-01 17 40271690 40271690 C T KAT2A Missense_Mutation p.R249Q 0.50 tolerated(0.1) benign(0.166) TCGA-EI-6882-01 17 4083028 4083028 G A ANKFY1 Silent p.N837N 0.34 TCGA-EI-6882-01 17 41006675 41006675 G A AOC3 Missense_Mutation p.R604H 0.62 deleterious(0) probably_damaging(0.995) TCGA-EI-6882-01 17 41244250 41244250 C T BRCA1 Missense_Mutation p.G1100R 0.38 tolerated(0.19) benign(0.006) TCGA-EI-6882-01 17 42456070 42456070 G A ITGA2B Silent p.I629I 0.37 TCGA-EI-6882-01 17 42460876 42460876 G A ITGA2B Missense_Mutation p.R399W 0.30 deleterious(0.01) possibly_damaging(0.751) TCGA-EI-6882-01 17 43012639 43012639 G A KIF18B Silent p.I153I 0.24 TCGA-EI-6882-01 17 43364209 43364209 G A MAP3K14 RNA 0.38 TCGA-EI-6882-01 17 43473397 43473397 C T ARHGAP27 Missense_Mutation p.E439K 0.46 deleterious(0) possibly_damaging(0.844) TCGA-EI-6882-01 17 43531440 43531440 C T PLEKHM1 Missense_Mutation p.R593H 0.40 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 17 44952691 44952691 C T WNT9B Missense_Mutation p.R187W 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 17 45757956 45757956 C T KPNB1 Missense_Mutation p.R851W 0.41 deleterious(0) probably_damaging(0.971) TCGA-EI-6882-01 17 4576661 4576661 G A PELP1 Missense_Mutation p.R577C 0.41 probably_damaging(0.971) TCGA-EI-6882-01 17 45773571 45773571 G A TBKBP1 Silent p.S31S 0.28 TCGA-EI-6882-01 17 4645286 4645286 G T ZMYND15 Missense_Mutation p.G302C 0.15 deleterious(0) possibly_damaging(0.905) TCGA-EI-6882-01 17 47293929 47293929 G A ABI3 Missense_Mutation p.A52T 0.34 deleterious(0.04) possibly_damaging(0.678) TCGA-EI-6882-01 17 47295217 47295217 G A ABI3 Silent p.T134T 0.39 TCGA-EI-6882-01 17 4803451 4803451 G - C17orf107 Intron 0.35 TCGA-EI-6882-01 17 48154434 48154434 G A ITGA3 Silent p.A673A 0.34 TCGA-EI-6882-01 17 4862784 4862785 - C SPAG7 3'UTR 0.41 TCGA-EI-6882-01 17 48650021 48650021 G A CACNA1G Missense_Mutation p.V285M 0.45 deleterious(0) probably_damaging(0.939) TCGA-EI-6882-01 17 48827881 48827882 - A LUC7L3 Frame_Shift_Ins p.S389Kfs*2 0.35 TCGA-EI-6882-01 17 4892741 4892741 C T INCA1 Missense_Mutation p.R126H 0.41 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 17 49059989 49059989 G A SPAG9 Missense_Mutation p.R1045W 0.47 deleterious(0) probably_damaging(0.918) TCGA-EI-6882-01 17 4926810 4926810 G A KIF1C Silent p.P892P 0.46 TCGA-EI-6882-01 17 56166690 56166690 G A DYNLL2 3'UTR 0.36 TCGA-EI-6882-01 17 56355289 56355289 C T MPO Missense_Mutation p.R368H 0.55 tolerated(0.1) benign(0.003) TCGA-EI-6882-01 17 56385029 56385029 C T BZRAP1 Silent p.S1642S 0.36 TCGA-EI-6882-01 17 56499614 56499614 T - HSF5 3'UTR 0.50 TCGA-EI-6882-01 17 56833613 56833613 G A PPM1E Silent p.P85P 0.37 TCGA-EI-6882-01 17 58346812 58346812 T - USP32 Frame_Shift_Del p.K270Nfs*20 0.14 TCGA-EI-6882-01 17 6068 6068 C T DOC2B Missense_Mutation p.R289Q 0.36 deleterious(0) probably_damaging(0.928) TCGA-EI-6882-01 17 60755881 60755881 G A MRC2 Missense_Mutation p.R690Q 0.52 tolerated(0.54) benign(0.011) TCGA-EI-6882-01 17 617903 617903 A G VPS53 Missense_Mutation p.V16A 0.12 tolerated(0.47) benign(0.001) TCGA-EI-6882-01 17 61877936 61877936 A - DDX42 Frame_Shift_Del p.I196Sfs*29 0.28 TCGA-EI-6882-01 17 61950065 61950065 C T CSH2 Missense_Mutation p.E110K 0.11 deleterious(0.01) benign(0.207) TCGA-EI-6882-01 17 62522230 62522230 T C CEP95 Missense_Mutation p.F355S 0.38 tolerated(0.23) benign(0.015) TCGA-EI-6882-01 17 65336874 65336874 A - PSMD12 3'UTR 0.36 TCGA-EI-6882-01 17 65871786 65871786 G A BPTF Intron 0.31 TCGA-EI-6882-01 17 66417809 66417809 C - WIPI1 3'UTR 0.33 TCGA-EI-6882-01 17 67039737 67039737 A - ABCA9 Frame_Shift_Del p.I232Ffs*24 0.16 TCGA-EI-6882-01 17 68171380 68171380 G A KCNJ2 Missense_Mutation p.R67Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 17 6913318 6913318 G A ALOX12 Missense_Mutation p.R562Q 0.41 deleterious(0.04) benign(0.428) TCGA-EI-6882-01 17 7127173 7127173 G - ACADVL Frame_Shift_Del p.G462Vfs*5 0.27 TCGA-EI-6882-01 17 71282170 71282170 G A CDC42EP4 Missense_Mutation p.A157V 0.42 tolerated(0.42) benign(0.001) TCGA-EI-6882-01 17 71443767 71443767 C T SDK2 Silent p.T200T 0.38 TCGA-EI-6882-01 17 7193851 7193851 C T YBX2 Missense_Mutation p.A155T 0.30 tolerated(0.07) possibly_damaging(0.798) TCGA-EI-6882-01 17 7217705 7217707 CTC - GPS2 In_Frame_Del p.E74del 0.10 TCGA-EI-6882-01 17 7220603 7220603 G A NEURL4 Missense_Mutation p.R1469W 0.50 deleterious(0) benign(0.425) TCGA-EI-6882-01 17 72341065 72341065 G A KIF19 Missense_Mutation p.D250N 0.40 deleterious(0.03) probably_damaging(1) TCGA-EI-6882-01 17 72436672 72436672 G A GPRC5C Missense_Mutation p.V298I 0.13 tolerated(1) benign(0.003) TCGA-EI-6882-01 17 72539126 72539126 G A CD300C Missense_Mutation p.A134V 0.43 tolerated(0.2) benign(0.031) TCGA-EI-6882-01 17 72540758 72540758 G A CD300C Silent p.S130S 0.32 TCGA-EI-6882-01 17 73497252 73497252 C A CASKIN2 Splice_Site p.X1173_splice 0.13 TCGA-EI-6882-01 17 73814802 73814802 C - UNK Frame_Shift_Del p.P486Lfs*12 0.30 TCGA-EI-6882-01 17 73832671 73832671 C T UNC13D Missense_Mutation p.R427Q 0.46 deleterious(0) probably_damaging(0.963) TCGA-EI-6882-01 17 73843909 73843909 G T WBP2 Missense_Mutation p.P167H 0.14 deleterious(0) probably_damaging(0.969) TCGA-EI-6882-01 17 73895281 73895281 G A MRPL38 Missense_Mutation p.R322C 0.12 tolerated(0.07) benign(0.004) TCGA-EI-6882-01 17 74005379 74005379 G A EVPL Missense_Mutation p.R1303C 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6882-01 17 74623252 74623253 - G ST6GALNAC1 Frame_Shift_Ins p.A357Rfs*42 0.35 TCGA-EI-6882-01 17 7464250 7464250 A T TNFSF12-TNFSF13 3'UTR 0.39 TCGA-EI-6882-01 17 74681242 74681244 CTT - MXRA7 In_Frame_Del p.E137del 0.41 TCGA-EI-6882-01 17 7493042 7493042 C T SOX15 5'UTR 0.25 TCGA-EI-6882-01 17 74936516 74936516 C - MGAT5B Frame_Shift_Del p.A550Pfs*73 0.24 TCGA-EI-6882-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.48 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 17 7592542 7592542 C T WRAP53 Silent p.T144T 0.43 TCGA-EI-6882-01 17 7640511 7640511 C T DNAH2 Missense_Mutation p.R369C 0.29 benign(0.127) TCGA-EI-6882-01 17 76462786 76462786 G A DNAH17 Missense_Mutation p.A2950V 0.57 probably_damaging(0.967) TCGA-EI-6882-01 17 7752527 7752527 G A KDM6B Missense_Mutation p.R974Q 0.41 benign(0.417) TCGA-EI-6882-01 17 7760645 7760645 C A LSMD1 Missense_Mutation p.G33W 0.36 deleterious_low_confidence(0) benign(0.319) TCGA-EI-6882-01 17 78182058 78182058 G A CARD14 Missense_Mutation p.D977N 0.42 deleterious(0) probably_damaging(0.993) TCGA-EI-6882-01 17 7827809 7827809 C T KCNAB3 Missense_Mutation p.R212Q 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6882-01 17 78363907 78363907 C T RNF213 Silent p.D5127D 0.33 TCGA-EI-6882-01 17 78410007 78410007 G A ENDOV 3'UTR 0.36 TCGA-EI-6882-01 17 79219707 79219707 G A SLC38A10 Silent p.G1003G 0.50 TCGA-EI-6882-01 17 79503210 79503210 G A FSCN2 Missense_Mutation p.R341Q 0.11 tolerated(0.16) possibly_damaging(0.611) TCGA-EI-6882-01 17 79612317 79612317 G - TSPAN10 Frame_Shift_Del p.L116Cfs*19 0.32 TCGA-EI-6882-01 17 80708405 80708405 C T FN3K Missense_Mutation p.P235L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 17 8092810 8092810 C T C17orf59 Missense_Mutation p.V217I 0.12 tolerated(0.09) probably_damaging(0.997) TCGA-EI-6882-01 17 8794160 8794160 C T PIK3R5 Silent p.T184T 0.34 TCGA-EI-6882-01 17 914003 914003 C T ABR Silent p.T734T 0.39 TCGA-EI-6882-01 18 10671476 10671476 A - PIEZO2 3'Flank 0.35 TCGA-EI-6882-01 18 13666619 13666619 G A FAM210A Missense_Mutation p.P227S 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-EI-6882-01 18 13731816 13731816 C T RNMT Silent p.G100G 0.39 TCGA-EI-6882-01 18 19444613 19444613 A G MIB1 Missense_Mutation p.I1003V 0.11 deleterious(0) benign(0.006) TCGA-EI-6882-01 18 23724532 23724532 C T PSMA8 Nonsense_Mutation p.R38* 0.40 TCGA-EI-6882-01 18 25570123 25570123 G A CDH2 Silent p.A512A 0.37 TCGA-EI-6882-01 18 31325065 31325065 G A ASXL3 Silent p.T1751T 0.52 TCGA-EI-6882-01 18 32431844 32431844 C T DTNA Missense_Mutation p.A408V 0.41 tolerated(0.18) benign(0.411) TCGA-EI-6882-01 18 32459572 32459572 A C DTNA Missense_Mutation p.E597A 0.09 tolerated_low_confidence(0.09) benign(0.001) TCGA-EI-6882-01 18 32888087 32888090 AAAC - ZNF271 RNA 0.12 TCGA-EI-6882-01 18 333040 333040 T C COLEC12 Silent p.S640S 0.09 TCGA-EI-6882-01 18 34205572 34205572 C T FHOD3 Silent p.G352G 0.31 TCGA-EI-6882-01 18 34854807 34854807 C A CELF4 Missense_Mutation p.Q206H 0.22 deleterious(0) possibly_damaging(0.881) TCGA-EI-6882-01 18 35145393 35145393 T C CELF4 Missense_Mutation p.K71R 0.22 tolerated(0.94) benign(0.014) TCGA-EI-6882-01 18 3729179 3729179 G A DLGAP1 Missense_Mutation p.P516L 0.49 tolerated(0.06) benign(0.221) TCGA-EI-6882-01 18 42531586 42531586 G A SETBP1 Missense_Mutation p.V761M 0.36 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 18 44159685 44159685 C T LOXHD1 Missense_Mutation p.V573I 0.39 deleterious(0.02) benign(0.011) TCGA-EI-6882-01 18 48510948 48510949 - T ELAC1 Intron 0.21 TCGA-EI-6882-01 18 48584773 48584773 A - SMAD4 Frame_Shift_Del p.N285Tfs*51 0.28 TCGA-EI-6882-01 18 56585939 56585939 C T ZNF532 Silent p.D140D 0.40 TCGA-EI-6882-01 18 57026435 57026435 C T LMAN1 Silent p.R14R 0.44 TCGA-EI-6882-01 18 580898 580898 C T CETN1 Missense_Mutation p.R164W 0.40 deleterious(0.02) benign(0.128) TCGA-EI-6882-01 18 60646323 60646323 G - PHLPP1 Frame_Shift_Del p.G1605Vfs*32 0.25 TCGA-EI-6882-01 18 60985818 60985818 A G BCL2 Missense_Mutation p.Y28H 0.51 tolerated(0.12) probably_damaging(0.994) TCGA-EI-6882-01 18 65181780 65181780 A - DSEL Frame_Shift_Del p.F32Lfs*5 0.20 TCGA-EI-6882-01 18 6997826 6997826 G A LAMA1 Missense_Mutation p.A1574V 0.37 tolerated(0.7) benign(0.033) TCGA-EI-6882-01 18 72997995 72997995 G A TSHZ1 Silent p.T166T 0.46 TCGA-EI-6882-01 18 74155023 74155023 C T ZNF516 5'UTR 0.21 TCGA-EI-6882-01 18 76753500 76753501 - C SALL3 Frame_Shift_Ins p.E506Rfs*90 0.33 TCGA-EI-6882-01 18 77659572 77659572 C T KCNG2 Missense_Mutation p.A386V 0.38 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 18 9887874 9887874 C T TXNDC2 Silent p.A466A 0.39 TCGA-EI-6882-01 19 10403524 10403524 G A ICAM5 Missense_Mutation p.A400T 0.39 tolerated(0.33) benign(0.013) TCGA-EI-6882-01 19 10600463 10600463 G A KEAP1 Silent p.G464G 0.38 TCGA-EI-6882-01 19 10625417 10625417 C T S1PR5 Missense_Mutation p.A91T 0.33 tolerated(0.15) benign(0.005) TCGA-EI-6882-01 19 10794465 10794465 G A ILF3 Missense_Mutation p.G673S 0.30 tolerated(0.09) unknown(0) TCGA-EI-6882-01 19 11038581 11038581 C G YIPF2 Missense_Mutation p.S29T 0.28 tolerated(0.1) benign(0.049) TCGA-EI-6882-01 19 11144017 11144017 C T SMARCA4 Missense_Mutation p.R1200C 0.31 possibly_damaging(0.893) TCGA-EI-6882-01 19 11152000 11152000 G A SMARCA4 Silent p.T1396T 0.44 TCGA-EI-6882-01 19 11333573 11333573 C T DOCK6 Silent p.T1026T 0.34 TCGA-EI-6882-01 19 11577525 11577525 C T ELAVL3 Missense_Mutation p.V43I 0.35 tolerated(0.35) benign(0.203) TCGA-EI-6882-01 19 11665155 11665155 C T ELOF1 Missense_Mutation p.R3H 0.43 deleterious(0) probably_damaging(0.966) TCGA-EI-6882-01 19 12155504 12155504 A - ZNF878 Frame_Shift_Del p.S238Lfs*5 0.28 TCGA-EI-6882-01 19 1272070 1272070 C T CIRBP Intron 0.40 TCGA-EI-6882-01 19 12866566 12866566 C T BEST2 Silent p.Y284Y 0.37 TCGA-EI-6882-01 19 13008601 13008601 G - GCDH Frame_Shift_Del p.N392Mfs*9 0.34 TCGA-EI-6882-01 19 13041103 13041103 C - FARSA Frame_Shift_Del p.G146Dfs*14 0.31 TCGA-EI-6882-01 19 14208678 14208678 C T PRKACA Silent p.A148A 0.42 TCGA-EI-6882-01 19 14270576 14270576 G A LPHN1 Nonsense_Mutation p.R609* 0.52 TCGA-EI-6882-01 19 14516597 14516597 C T CD97 Missense_Mutation p.A556V 0.38 tolerated(0.09) benign(0.086) TCGA-EI-6882-01 19 14561724 14561724 C T PKN1 Missense_Mutation p.T264I 0.39 tolerated(0.21) benign(0.009) TCGA-EI-6882-01 19 14703115 14703115 G T CLEC17A Missense_Mutation p.E74D 0.07 tolerated(0.55) benign(0.002) TCGA-EI-6882-01 19 15061198 15061198 G A SLC1A6 Missense_Mutation p.R502W 0.42 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 19 15166805 15166805 C T CASP14 Missense_Mutation p.R212W 0.33 deleterious(0) possibly_damaging(0.849) TCGA-EI-6882-01 19 1556765 1556765 G A MEX3D Silent p.R251R 0.38 TCGA-EI-6882-01 19 1556821 1556821 C T MEX3D Missense_Mutation p.V233M 0.40 deleterious(0) probably_damaging(0.92) TCGA-EI-6882-01 19 16631450 16631450 C T C19orf44 3'UTR 0.50 TCGA-EI-6882-01 19 17338007 17338007 C T OCEL1 Missense_Mutation p.L151F 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6882-01 19 18047356 18047356 G A CCDC124 Missense_Mutation p.D43N 0.08 deleterious(0.03) probably_damaging(1) TCGA-EI-6882-01 19 18092630 18092630 A G KCNN1 Missense_Mutation p.H204R 0.28 tolerated(0.17) benign(0.216) TCGA-EI-6882-01 19 18273888 18273888 C T PIK3R2 Silent p.H407H 0.43 TCGA-EI-6882-01 19 18305846 18305846 A G MPV17L2 Missense_Mutation p.N172D 0.43 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 19 18376661 18376661 A G KIAA1683 Silent p.A563A 0.20 TCGA-EI-6882-01 19 18541714 18541714 G T SSBP4 Missense_Mutation p.G115C 0.17 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 19 19221753 19221753 G - SLC25A42 3'UTR 0.36 TCGA-EI-6882-01 19 19261528 19261528 A G MEF2B Missense_Mutation p.I6T 0.13 deleterious(0) probably_damaging(0.976) TCGA-EI-6882-01 19 19672896 19672896 G - PBX4 Frame_Shift_Del p.Q355Nfs*25 0.11 TCGA-EI-6882-01 19 20044270 20044270 A - ZNF93 Frame_Shift_Del p.K171Nfs*6 0.36 TCGA-EI-6882-01 19 2111765 2111765 C A AP3D1 Missense_Mutation p.K950N 0.40 tolerated_low_confidence(0.2) benign(0.032) TCGA-EI-6882-01 19 2214117 2214117 C A DOT1L Intron 0.40 TCGA-EI-6882-01 19 2796130 2796130 C T THOP1 Missense_Mutation p.R144W 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 19 2813183 2813183 G A THOP1 Missense_Mutation p.R660H 0.36 tolerated(0.09) benign(0.001) TCGA-EI-6882-01 19 3150246 3150246 C T GNA15 Missense_Mutation p.R150C 0.41 deleterious(0) probably_damaging(0.954) TCGA-EI-6882-01 19 33870482 33870482 A G CEBPG Missense_Mutation p.K113E 0.52 deleterious(0) probably_damaging(0.928) TCGA-EI-6882-01 19 34710314 34710314 C T LSM14A Missense_Mutation p.A267V 0.27 tolerated(0.15) benign(0.004) TCGA-EI-6882-01 19 34710448 34710449 AG - LSM14A Frame_Shift_Del p.E313Vfs*3 0.30 TCGA-EI-6882-01 19 3496698 3496698 C T DOHH Missense_Mutation p.A39T 0.50 deleterious(0.01) possibly_damaging(0.67) TCGA-EI-6882-01 19 35523468 35523468 C T SCN1B Missense_Mutation p.S26L 0.46 deleterious(0) probably_damaging(0.995) TCGA-EI-6882-01 19 35941055 35941055 G A FFAR2 Missense_Mutation p.V147I 0.41 tolerated(0.18) possibly_damaging(0.782) TCGA-EI-6882-01 19 36029512 36029512 C T GAPDHS Nonsense_Mutation p.R126* 0.29 TCGA-EI-6882-01 19 36037614 36037614 G A TMEM147 Missense_Mutation p.G83D 0.32 deleterious(0.03) possibly_damaging(0.475) TCGA-EI-6882-01 19 36050919 36050919 C T ATP4A Missense_Mutation p.A282T 0.31 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 19 36728653 36728653 A - ZNF146 3'UTR 0.30 TCGA-EI-6882-01 19 3733872 3733872 C T TJP3 Missense_Mutation p.P289L 0.20 deleterious(0) probably_damaging(0.995) TCGA-EI-6882-01 19 37676217 37676218 GT - ZNF585B Frame_Shift_Del p.T741Wfs*34 0.11 TCGA-EI-6882-01 19 38954161 38954161 C T RYR1 Silent p.Y892Y 0.47 TCGA-EI-6882-01 19 3918804 3918804 C T ATCAY Silent p.S334S 0.26 TCGA-EI-6882-01 19 39299524 39299524 G A LGALS4 Missense_Mutation p.R67W 0.39 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 19 40317947 40317947 C T DYRK1B Missense_Mutation p.R358Q 0.08 deleterious(0.04) benign(0.294) TCGA-EI-6882-01 19 40366450 40366450 C T FCGBP Missense_Mutation p.S4595N 0.45 possibly_damaging(0.449) TCGA-EI-6882-01 19 40412196 40412196 C T FCGBP Silent p.A1144A 0.47 TCGA-EI-6882-01 19 40718777 40718777 C T MAP3K10 Missense_Mutation p.R540C 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6882-01 19 42381395 42381395 C A CD79A Silent p.V7V 0.41 TCGA-EI-6882-01 19 42596364 42596364 A G POU2F2 Silent p.G419G 0.32 TCGA-EI-6882-01 19 4268649 4268649 C T CCDC94 Silent p.L310L 0.18 TCGA-EI-6882-01 19 42753685 42753685 C T ERF Silent p.T193T 0.31 TCGA-EI-6882-01 19 42840160 42840160 G A MEGF8 Silent p.S302S 0.35 TCGA-EI-6882-01 19 4323682 4323682 C T FSD1 3'UTR 0.37 TCGA-EI-6882-01 19 4361648 4361648 C T SH3GL1 Silent p.S352S 0.52 TCGA-EI-6882-01 19 44117030 44117030 A G SRRM5 Missense_Mutation p.R253G 0.40 tolerated(0.11) benign(0.006) TCGA-EI-6882-01 19 44131826 44131826 G A CADM4 Missense_Mutation p.R61W 0.36 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 19 4454046 4454046 G A UBXN6 Missense_Mutation p.P43L 0.49 tolerated(0.28) benign(0.007) TCGA-EI-6882-01 19 44660715 44660715 A - ZNF234 Frame_Shift_Del p.S184Afs*45 0.27 TCGA-EI-6882-01 19 45281297 45281297 C T CBLC Silent p.L37L 0.45 TCGA-EI-6882-01 19 47226387 47226387 G T STRN4 Silent p.T590T 0.27 TCGA-EI-6882-01 19 47823617 47823617 G A C5AR1 Missense_Mutation p.D195N 0.45 tolerated(0.66) benign(0.003) TCGA-EI-6882-01 19 47878911 47878911 C T DHX34 Silent p.D751D 0.41 TCGA-EI-6882-01 19 48908206 48908206 G A GRIN2D Silent p.A227A 0.34 TCGA-EI-6882-01 19 48919402 48919402 G A GRIN2D Silent p.S575S 0.50 TCGA-EI-6882-01 19 49104374 49104375 - C FAM83E Frame_Shift_Ins p.Q477Afs*72 0.17 TCGA-EI-6882-01 19 49110234 49110234 C T SPACA4 5'UTR 0.36 TCGA-EI-6882-01 19 49335012 49335013 - G HSD17B14 Frame_Shift_Ins p.P95Tfs*6 0.10 TCGA-EI-6882-01 19 49477989 49477989 C T GYS1 Missense_Mutation p.R437Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-EI-6882-01 19 49969503 49969503 G - ALDH16A1 Frame_Shift_Del p.A636Pfs*12 0.24 TCGA-EI-6882-01 19 50154212 50154212 C - SCAF1 Frame_Shift_Del p.S191Pfs*120 0.08 TCGA-EI-6882-01 19 50335673 50335673 G A MED25 Splice_Site p.X494_splice 0.45 TCGA-EI-6882-01 19 50385544 50385544 C T TBC1D17 Nonsense_Mutation p.R229* 0.49 TCGA-EI-6882-01 19 50735239 50735239 G A MYH14 Silent p.P342P 0.18 TCGA-EI-6882-01 19 50826269 50826269 C T KCNC3 Silent p.P647P 0.24 TCGA-EI-6882-01 19 50839864 50839864 G A NAPSB RNA 0.27 TCGA-EI-6882-01 19 51132651 51132651 C T SYT3 Missense_Mutation p.R394Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 19 51170393 51170393 C T SHANK1 Silent p.P1608P 0.38 TCGA-EI-6882-01 19 51525885 51525885 C T KLK11 Silent p.P255P 0.42 TCGA-EI-6882-01 19 52328208 52328208 T - FPR3 3'UTR 0.38 TCGA-EI-6882-01 19 52888239 52888239 G A ZNF880 Missense_Mutation p.C469Y 0.39 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 19 53007975 53007975 C T ZNF578 Missense_Mutation p.A44V 0.49 deleterious(0.04) benign(0.339) TCGA-EI-6882-01 19 53794721 53794721 G A BIRC8 5'UTR 0.26 TCGA-EI-6882-01 19 54214313 54214313 C T MIR524 RNA 0.42 TCGA-EI-6882-01 19 54496353 54496353 C T CACNG6 Silent p.A74A 0.26 TCGA-EI-6882-01 19 54652177 54652177 G A CNOT3 Missense_Mutation p.G397R 0.49 tolerated(0.55) benign(0.058) TCGA-EI-6882-01 19 54725663 54745413 19:54725663-54745413 - LILRB3 large deletion 0.11 TCGA-EI-6882-01 19 55505667 55505667 C A NLRP2 Silent p.G913G 0.35 TCGA-EI-6882-01 19 55526506 55526506 C T GP6 Silent p.G269G 0.23 TCGA-EI-6882-01 19 55603668 55603668 G A PPP1R12C Silent p.N694N 0.27 TCGA-EI-6882-01 19 55789210 55789210 C T HSPBP1 Missense_Mutation p.R72H 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-EI-6882-01 19 55798430 55798430 C T BRSK1 Silent p.I64I 0.31 TCGA-EI-6882-01 19 55995411 55995411 G A ZNF628 Missense_Mutation p.V951I 0.41 deleterious(0.03) unknown(0) TCGA-EI-6882-01 19 56196847 56196847 C T EPN1 Missense_Mutation p.T216M 0.60 deleterious(0) unknown(0) TCGA-EI-6882-01 19 56313013 56313013 G A NLRP11 Missense_Mutation p.T699M 0.39 tolerated(0.48) benign(0.005) TCGA-EI-6882-01 19 56443517 56443517 C T NLRP13 Missense_Mutation p.R54H 0.27 tolerated(0.16) benign(0.001) TCGA-EI-6882-01 19 56539142 56539142 G A NLRP5 Missense_Mutation p.V515M 0.44 tolerated(0.09) benign(0.051) TCGA-EI-6882-01 19 57037257 57037257 G A ZNF471 Silent p.A607A 0.34 TCGA-EI-6882-01 19 57175631 57175631 G A ZNF835 Silent p.G312G 0.48 TCGA-EI-6882-01 19 57176150 57176150 C T ZNF835 Silent p.A139A 0.09 TCGA-EI-6882-01 19 57335958 57335958 C T PEG3 Silent p.E22E 0.38 TCGA-EI-6882-01 19 58058702 58058702 G A ZNF550 Missense_Mutation p.R263C 0.47 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6882-01 19 58619290 58619290 C T ZSCAN18 Intron 0.24 TCGA-EI-6882-01 19 58846270 58846270 C T ZSCAN22 Silent p.G34G 0.28 TCGA-EI-6882-01 19 58868621 58868621 C T ZNF497 Silent p.V127V 0.29 TCGA-EI-6882-01 19 59028670 59028670 C T ZBTB45 Missense_Mutation p.R124H 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6882-01 19 5994951 5994951 G A RFX2 Silent p.G689G 0.32 TCGA-EI-6882-01 19 6744854 6744854 G A TRIP10 Missense_Mutation p.R278H 0.10 deleterious(0) possibly_damaging(0.705) TCGA-EI-6882-01 19 6746066 6746066 G - TRIP10 Intron 0.38 TCGA-EI-6882-01 19 6828877 6828877 A T VAV1 Missense_Mutation p.I411F 0.21 deleterious(0) possibly_damaging(0.854) TCGA-EI-6882-01 19 6857193 6857193 C T VAV1 3'Flank 0.48 TCGA-EI-6882-01 19 6928195 6928195 C A EMR1 Missense_Mutation p.F754L 0.47 deleterious(0) probably_damaging(0.973) TCGA-EI-6882-01 19 7523454 7523454 C T ARHGEF18 Silent p.N558N 0.40 TCGA-EI-6882-01 19 7585090 7585090 G A ZNF358 Missense_Mutation p.C321Y 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 19 7593995 7593995 G A MCOLN1 Silent p.A381A 0.41 TCGA-EI-6882-01 19 7615403 7615403 G A PNPLA6 Silent p.R658R 0.37 TCGA-EI-6882-01 19 7755399 7755399 G A FCER2 Missense_Mutation p.R172W 0.45 deleterious(0.01) possibly_damaging(0.651) TCGA-EI-6882-01 19 8130998 8130998 G A FBN3 Silent p.N2745N 0.40 TCGA-EI-6882-01 19 814992 814992 C G LPPR3 Missense_Mutation p.V165L 0.10 deleterious(0) probably_damaging(0.959) TCGA-EI-6882-01 19 9452995 9452995 C G ZNF559 Missense_Mutation p.L290V 0.10 tolerated(0.62) benign(0.005) TCGA-EI-6882-01 1 100154358 100154358 A - PALMD Frame_Shift_Del p.D183Tfs*2 0.30 TCGA-EI-6882-01 1 10132190 10132190 G A UBE4B Silent p.A43A 0.27 TCGA-EI-6882-01 1 101458208 101458208 G A DPH5 Nonsense_Mutation p.R207* 0.39 TCGA-EI-6882-01 1 101706269 101706269 C T S1PR1 3'UTR 0.25 TCGA-EI-6882-01 1 103387103 103387103 T C COL11A1 Missense_Mutation p.R1227G 0.34 unknown(0) TCGA-EI-6882-01 1 10460571 10460571 G A PGD Missense_Mutation p.R69Q 0.44 deleterious(0.04) possibly_damaging(0.896) TCGA-EI-6882-01 1 10709390 10709390 C A CASZ1 Missense_Mutation p.K995N 0.41 deleterious(0.04) benign(0.083) TCGA-EI-6882-01 1 110300941 110300941 G A EPS8L3 Silent p.D239D 0.33 TCGA-EI-6882-01 1 111147188 111147188 G A KCNA2 Nonsense_Mutation p.R73* 0.40 TCGA-EI-6882-01 1 112020815 112020816 - T C1orf162 3'UTR 0.14 TCGA-EI-6882-01 1 112998890 112998890 G A CTTNBP2NL Missense_Mutation p.R259Q 0.14 tolerated(0.12) probably_damaging(0.996) TCGA-EI-6882-01 1 114523105 114523105 G A OLFML3 Missense_Mutation p.R89H 0.46 deleterious(0) probably_damaging(0.97) TCGA-EI-6882-01 1 114680476 114680476 G A SYT6 Missense_Mutation p.R153C 0.42 tolerated(0.12) benign(0.001) TCGA-EI-6882-01 1 115268937 115268937 C T CSDE1 Missense_Mutation p.R558H 0.42 deleterious(0.04) benign(0.329) TCGA-EI-6882-01 1 116226625 116226625 G T VANGL1 Missense_Mutation p.R336M 0.44 deleterious(0) possibly_damaging(0.695) TCGA-EI-6882-01 1 1170250 1170250 G A B3GALT6 3'UTR 0.44 TCGA-EI-6882-01 1 118168917 118168917 C - FAM46C 3'UTR 0.28 TCGA-EI-6882-01 1 11861274 11861274 C T MTHFR Missense_Mutation p.G140D 0.27 tolerated(0.58) benign(0.003) TCGA-EI-6882-01 1 11907256 11907256 G T NPPA Missense_Mutation p.P122T 0.27 deleterious(0) probably_damaging(0.993) TCGA-EI-6882-01 1 1234023 1234023 C T ACAP3 Missense_Mutation p.V263M 0.50 deleterious(0) benign(0.27) TCGA-EI-6882-01 1 1361606 1361606 C A TMEM88B Silent p.A33A 0.41 TCGA-EI-6882-01 1 144856953 144856953 G A PDE4DIP Missense_Mutation p.R2178C 0.14 tolerated(0.24) probably_damaging(0.993) TCGA-EI-6882-01 1 149857771 149857771 G A HIST2H2BE 3'UTR 0.55 TCGA-EI-6882-01 1 150482292 150482292 C T ECM1 Intron 0.57 TCGA-EI-6882-01 1 151143959 151143959 C T TMOD4 Missense_Mutation p.V226M 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 1 151205105 151205105 G A PIP5K1A Missense_Mutation p.D189N 0.27 deleterious(0) possibly_damaging(0.523) TCGA-EI-6882-01 1 151506463 151506463 C T CGN Missense_Mutation p.R919W 0.45 deleterious(0) probably_damaging(0.99) TCGA-EI-6882-01 1 151787545 151787545 T C RORC Missense_Mutation p.S219G 0.23 tolerated(0.47) benign(0) TCGA-EI-6882-01 1 154127591 154127591 G A NUP210L 5'UTR 0.18 TCGA-EI-6882-01 1 15429887 15429887 G A KAZN Silent p.T604T 0.40 TCGA-EI-6882-01 1 154437961 154437961 C T IL6R 3'UTR 0.50 TCGA-EI-6882-01 1 154543938 154543938 C T CHRNB2 Silent p.N213N 0.61 TCGA-EI-6882-01 1 154561932 154561932 C T ADAR Missense_Mutation p.R892H 0.40 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 1 155142285 155142285 C T RP11-201K10.3 Missense_Mutation p.E195K 0.59 unknown(0) TCGA-EI-6882-01 1 155205518 155205518 C G GBA Missense_Mutation p.D448H 0.11 tolerated(0.05) benign(0.04) TCGA-EI-6882-01 1 155265502 155265502 G A PKLR Missense_Mutation p.A110V 0.28 deleterious(0.01) probably_damaging(1) TCGA-EI-6882-01 1 155291339 155291339 C T RUSC1 Intron 0.27 TCGA-EI-6882-01 1 155649279 155649279 T C YY1AP1 Missense_Mutation p.N154D 0.08 tolerated(0.06) benign(0.23) TCGA-EI-6882-01 1 156213621 156213621 C T PAQR6 3'UTR 0.47 TCGA-EI-6882-01 1 156219421 156219421 C T SMG5 3'UTR 0.28 TCGA-EI-6882-01 1 156222737 156222737 G A SMG5 Missense_Mutation p.R879C 0.64 tolerated(0.08) probably_damaging(0.939) TCGA-EI-6882-01 1 157522232 157522232 T G FCRL5 5'UTR 0.32 TCGA-EI-6882-01 1 157650542 157650542 T G FCRL3 Missense_Mutation p.N659T 0.05 tolerated(0.14) benign(0.012) TCGA-EI-6882-01 1 158064760 158064760 C - KIRREL Frame_Shift_Del p.Q710Rfs*128 0.39 TCGA-EI-6882-01 1 15817702 15817702 T A CASP9 3'Flank 0.27 TCGA-EI-6882-01 1 158532750 158532750 A C OR6P1 Silent p.V215V 0.34 TCGA-EI-6882-01 1 158595939 158595939 T C SPTA1 Silent p.K1969K 0.06 TCGA-EI-6882-01 1 159683676 159683676 G T CRP Missense_Mutation p.P105H 0.60 tolerated(0.07) benign(0.028) TCGA-EI-6882-01 1 160156481 160156481 T C ATP1A4 Missense_Mutation p.Y1028H 0.18 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 1 16059137 16059137 C T PLEKHM2 Missense_Mutation p.P946S 0.26 tolerated(0.13) benign(0.097) TCGA-EI-6882-01 1 161476238 161476238 A C FCGR2A Missense_Mutation p.Q74P 0.23 deleterious(0) benign(0.009) TCGA-EI-6882-01 1 16271627 16271627 G A ZBTB17 Silent p.G244G 0.17 TCGA-EI-6882-01 1 16386059 16386059 G A FAM131C Silent p.S164S 0.24 TCGA-EI-6882-01 1 166927098 166927098 C T ILDR2 Missense_Mutation p.S96N 0.19 tolerated(0.29) benign(0.025) TCGA-EI-6882-01 1 166990383 166990384 - A MAEL Frame_Shift_Ins p.N369Kfs*6 0.16 TCGA-EI-6882-01 1 1721845 1721845 T A GNB1 Missense_Mutation p.N230Y 0.20 deleterious(0) probably_damaging(0.928) TCGA-EI-6882-01 1 17277466 17277466 G A CROCC Missense_Mutation p.R952Q 0.45 probably_damaging(0.996) TCGA-EI-6882-01 1 173952009 173952009 C T RC3H1 Silent p.L208L 0.07 TCGA-EI-6882-01 1 174987577 174987577 T C MRPS14 Missense_Mutation p.T61A 0.28 tolerated(0.14) benign(0.2) TCGA-EI-6882-01 1 17603075 17603075 C - PADI3 Frame_Shift_Del p.V459Wfs*17 0.27 TCGA-EI-6882-01 1 180151348 180151348 C T QSOX1 Missense_Mutation p.R216C 0.30 deleterious(0) probably_damaging(0.991) TCGA-EI-6882-01 1 18023714 18023714 G A ARHGEF10L Missense_Mutation p.A1227T 0.56 tolerated(0.11) benign(0.004) TCGA-EI-6882-01 1 181764124 181764124 G A CACNA1E Missense_Mutation p.R2051H 0.10 tolerated(0.41) possibly_damaging(0.848) TCGA-EI-6882-01 1 181767581 181767581 C T CACNA1E Missense_Mutation p.P2185S 0.58 tolerated(0.07) benign(0.07) TCGA-EI-6882-01 1 183084730 183084730 G A LAMC1 Missense_Mutation p.R429H 0.31 deleterious(0.04) probably_damaging(0.964) TCGA-EI-6882-01 1 183516297 183516297 G T SMG7 Missense_Mutation p.E888D 0.23 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-EI-6882-01 1 183885811 183885811 C T RGL1 Silent p.N695N 0.34 TCGA-EI-6882-01 1 184681695 184681695 G T EDEM3 Missense_Mutation p.L470I 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 1 185143772 185143772 G A SWT1 Missense_Mutation p.E165K 0.07 tolerated(0.11) benign(0.027) TCGA-EI-6882-01 1 186088378 186088378 C T HMCN1 Silent p.V3968V 0.29 TCGA-EI-6882-01 1 18809048 18809048 C - KLHDC7A Frame_Shift_Del p.E527Rfs*49 0.38 TCGA-EI-6882-01 1 18809869 18809869 G A KLHDC7A 3'UTR 0.44 TCGA-EI-6882-01 1 192780688 192780688 A - RGS2 Frame_Shift_Del p.K201Sfs*14 0.34 TCGA-EI-6882-01 1 196759035 196759037 AAG - CFHR3 Intron 0.33 TCGA-EI-6882-01 1 196799667 196799667 C T CFHR1 Silent p.D215D 0.13 TCGA-EI-6882-01 1 197070855 197070855 A G ASPM Missense_Mutation p.L2509P 0.31 deleterious(0.01) possibly_damaging(0.781) TCGA-EI-6882-01 1 200817997 200817997 C T CAMSAP2 Silent p.T700T 0.55 TCGA-EI-6882-01 1 201355513 201355513 C - LAD1 Frame_Shift_Del p.A326Lfs*18 0.42 TCGA-EI-6882-01 1 201356296 201356296 C T LAD1 Missense_Mutation p.V65M 0.58 tolerated(0.1) benign(0.232) TCGA-EI-6882-01 1 204228469 204228469 A - PLEKHA6 Frame_Shift_Del p.I308Mfs*8 0.35 TCGA-EI-6882-01 1 204380153 204380153 G A PPP1R15B Silent p.L129L 0.26 TCGA-EI-6882-01 1 204985616 204985616 C T NFASC Silent p.N1224N 0.54 TCGA-EI-6882-01 1 206658404 206658404 C T IKBKE Missense_Mutation p.R500W 0.15 deleterious(0.03) possibly_damaging(0.841) TCGA-EI-6882-01 1 206757987 206757987 T - RASSF5 Frame_Shift_Del p.F321Lfs*39 0.36 TCGA-EI-6882-01 1 207236058 207236058 G A PFKFB2 Missense_Mutation p.R102H 0.58 probably_damaging(1) TCGA-EI-6882-01 1 2103501 2103501 G A PRKCZ Missense_Mutation p.A357T 0.50 deleterious(0.02) possibly_damaging(0.713) TCGA-EI-6882-01 1 212550930 212550930 G A TMEM206 Missense_Mutation p.R314W 0.24 deleterious(0) probably_damaging(0.931) TCGA-EI-6882-01 1 212799594 212799594 T G FAM71A Missense_Mutation p.S459A 0.22 tolerated(0.23) benign(0.001) TCGA-EI-6882-01 1 214557849 214557849 C T PTPN14 Missense_Mutation p.R450H 0.54 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6882-01 1 21554507 21554507 G A ECE1 Silent p.N566N 0.33 TCGA-EI-6882-01 1 215799151 215799151 C T USH2A Missense_Mutation p.R5194H 0.29 benign(0) TCGA-EI-6882-01 1 220344442 220344442 A G RAB3GAP2 Silent p.G866G 0.18 TCGA-EI-6882-01 1 220355682 220355682 A - RAB3GAP2 Frame_Shift_Del p.W743Gfs*32 0.38 TCGA-EI-6882-01 1 222695994 222695994 G A HHIPL2 Silent p.G708G 0.53 TCGA-EI-6882-01 1 223441975 223441975 T C SUSD4 Missense_Mutation p.K135R 0.31 tolerated(0.27) benign(0.059) TCGA-EI-6882-01 1 223567556 223567556 C T C1orf65 Silent p.L247L 0.52 TCGA-EI-6882-01 1 227171527 227171527 C T ADCK3 Nonsense_Mutation p.R410* 0.16 TCGA-EI-6882-01 1 228554752 228554752 C T OBSCN Missense_Mutation p.R7459W 0.34 probably_damaging(0.967) TCGA-EI-6882-01 1 22903133 22903134 CT - EPHA8 Frame_Shift_Del p.L197Pfs*5 0.39 TCGA-EI-6882-01 1 2319772 2319772 G A MORN1 Silent p.H51H 0.41 TCGA-EI-6882-01 1 2337166 2337166 G A PEX10 3'UTR 0.45 TCGA-EI-6882-01 1 233802496 233802496 C T KCNK1 Missense_Mutation p.R171C 0.10 deleterious(0.03) possibly_damaging(0.808) TCGA-EI-6882-01 1 23408001 23408001 G A KDM1A Missense_Mutation p.D745N 0.38 deleterious(0.01) probably_damaging(0.954) TCGA-EI-6882-01 1 23419554 23419554 G A LUZP1 Nonsense_Mutation p.R401* 0.36 TCGA-EI-6882-01 1 235506597 235506597 G A GGPS1 3'UTR 0.25 TCGA-EI-6882-01 1 235884002 235884002 G A LYST Silent p.Y3173Y 0.54 TCGA-EI-6882-01 1 236881197 236881197 G A ACTN2 Missense_Mutation p.G56S 0.06 tolerated(0.15) possibly_damaging(0.765) TCGA-EI-6882-01 1 236925875 236925875 T C ACTN2 Missense_Mutation p.Y881H 0.68 deleterious(0) probably_damaging(0.982) TCGA-EI-6882-01 1 237049646 237049646 T A MTR Missense_Mutation p.W944R 0.59 deleterious(0) probably_damaging(0.93) TCGA-EI-6882-01 1 240939344 240939344 A G RGS7 3'UTR 0.40 TCGA-EI-6882-01 1 2411240 2411240 C T PLCH2 Silent p.D86D 0.46 TCGA-EI-6882-01 1 243363898 243363898 C A CEP170 Missense_Mutation p.D140Y 0.14 tolerated(0.17) benign(0.064) TCGA-EI-6882-01 1 2435699 2435699 G A PLCH2 3'UTR 0.36 TCGA-EI-6882-01 1 24409218 24409218 G A MYOM3 Intron 0.42 TCGA-EI-6882-01 1 2441315 2441315 C T PANK4 Silent p.P698P 0.45 TCGA-EI-6882-01 1 245848728 245848728 G - KIF26B Frame_Shift_Del p.E816Rfs*15 0.19 TCGA-EI-6882-01 1 245848821 245848821 G A KIF26B Missense_Mutation p.A846T 0.14 tolerated(0.34) unknown(0) TCGA-EI-6882-01 1 248344227 248344227 T G OR2M2 Missense_Mutation p.L314V 0.17 tolerated(0.71) benign(0) TCGA-EI-6882-01 1 248636891 248636891 C T OR2T3 Silent p.C80C 0.34 TCGA-EI-6882-01 1 248685815 248685815 T C OR2G6 Missense_Mutation p.Y290H 0.15 deleterious(0.01) probably_damaging(1) TCGA-EI-6882-01 1 25228691 25228691 G A RUNX3 Silent p.A404A 0.29 TCGA-EI-6882-01 1 26104724 26104724 C T MAN1C1 Silent p.G462G 0.45 TCGA-EI-6882-01 1 26107518 26107518 G A MAN1C1 Missense_Mutation p.R522Q 0.09 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 1 26131730 26131730 G A SEPN1 Silent p.P167P 0.29 TCGA-EI-6882-01 1 27023560 27023560 C - ARID1A Frame_Shift_Del p.P224Rfs*8 0.30 TCGA-EI-6882-01 1 27100878 27100878 A G ARID1A Missense_Mutation p.E1387G 0.32 unknown(0) TCGA-EI-6882-01 1 27878399 27878399 G A AHDC1 Silent p.V76V 0.32 TCGA-EI-6882-01 1 28208513 28208513 C A THEMIS2 Silent p.T226T 0.36 TCGA-EI-6882-01 1 28800624 28800624 G A PHACTR4 Missense_Mutation p.R471Q 0.47 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 1 29040594 29040594 G A GMEB1 Missense_Mutation p.R344H 0.42 tolerated(0.25) possibly_damaging(0.483) TCGA-EI-6882-01 1 32157629 32157629 C T COL16A1 Missense_Mutation p.V412M 0.32 unknown(0) TCGA-EI-6882-01 1 3301765 3301765 C T PRDM16 Missense_Mutation p.A163V 0.40 tolerated(0.16) benign(0.004) TCGA-EI-6882-01 1 33235814 33235814 C - KIAA1522 Frame_Shift_Del p.Q347Rfs*8 0.36 TCGA-EI-6882-01 1 34123588 34123588 C T CSMD2 Missense_Mutation p.E1429K 0.35 deleterious(0.03) benign(0.105) TCGA-EI-6882-01 1 3415052 3415052 G - MEGF6 Frame_Shift_Del p.R1079Gfs*195 0.39 TCGA-EI-6882-01 1 34677854 34677854 G A C1orf94 Missense_Mutation p.R523H 0.35 tolerated(0.1) benign(0.081) TCGA-EI-6882-01 1 35260379 35260379 C T GJA4 Nonsense_Mutation p.R189* 0.09 TCGA-EI-6882-01 1 35580087 35580088 - T ZMYM1 Frame_Shift_Ins p.S888Ffs*16 0.24 TCGA-EI-6882-01 1 36028226 36028226 C T NCDN Silent p.D459D 0.34 TCGA-EI-6882-01 1 36479317 36479317 C T AGO3 Silent p.R412R 0.47 TCGA-EI-6882-01 1 36553678 36553678 G A TEKT2 Missense_Mutation p.R395H 0.50 tolerated(0.05) benign(0.059) TCGA-EI-6882-01 1 36642311 36642313 AGA - MAP7D1 In_Frame_Del p.K418del 0.11 TCGA-EI-6882-01 1 36941071 36941071 G A CSF3R Missense_Mutation p.P90S 0.32 deleterious(0.04) benign(0.39) TCGA-EI-6882-01 1 37267612 37267612 C T GRIK3 Missense_Mutation p.R867H 0.24 deleterious(0.02) possibly_damaging(0.576) TCGA-EI-6882-01 1 38052912 38052912 C A GNL2 Missense_Mutation p.R190I 0.34 deleterious(0.02) possibly_damaging(0.775) TCGA-EI-6882-01 1 38289411 38289411 G A MTF1 Missense_Mutation p.T381M 0.07 tolerated(0.07) benign(0.02) TCGA-EI-6882-01 1 39881322 39881322 C T KIAA0754 3'UTR 0.29 TCGA-EI-6882-01 1 39913487 39913487 G A MACF1 Missense_Mutation p.V4570M 0.35 possibly_damaging(0.897) TCGA-EI-6882-01 1 40092448 40092448 G A HEYL Nonsense_Mutation p.R240* 0.42 TCGA-EI-6882-01 1 40125010 40125010 C T NT5C1A Missense_Mutation p.R297H 0.33 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 1 40981450 40981450 T - EXO5 3'UTR 0.25 TCGA-EI-6882-01 1 43787145 43787145 G A TIE1 Missense_Mutation p.R1076Q 0.41 tolerated(0.3) probably_damaging(0.92) TCGA-EI-6882-01 1 43903125 43903125 G A SZT2 Missense_Mutation p.R2022Q 0.44 deleterious(0) probably_damaging(0.992) TCGA-EI-6882-01 1 44035293 44035293 G A PTPRF Missense_Mutation p.D138N 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-EI-6882-01 1 44878119 44878119 T G RNF220 Missense_Mutation p.V117G 0.07 deleterious(0.04) benign(0.12) TCGA-EI-6882-01 1 45166682 45166682 A G C1orf228 Missense_Mutation p.H177R 0.15 tolerated(0.12) probably_damaging(0.999) TCGA-EI-6882-01 1 45294707 45294707 C T PTCH2 Missense_Mutation p.V471I 0.42 tolerated(0.55) benign(0.004) TCGA-EI-6882-01 1 45797968 45797968 T C MUTYH Missense_Mutation p.Q265R 0.37 tolerated(0.28) benign(0.012) TCGA-EI-6882-01 1 47144274 47144274 G A EFCAB14 Silent p.D449D 0.44 TCGA-EI-6882-01 1 53544425 53544425 C T PODN Missense_Mutation p.R463C 0.23 deleterious(0.04) probably_damaging(0.947) TCGA-EI-6882-01 1 53556301 53556301 G T SLC1A7 Silent p.G403G 0.34 TCGA-EI-6882-01 1 54427980 54427980 C T LRRC42 Silent p.T275T 0.39 TCGA-EI-6882-01 1 55457692 55457692 T C TMEM61 Silent p.A183A 0.08 TCGA-EI-6882-01 1 6029198 6029198 C T NPHP4 Missense_Mutation p.R134Q 0.42 tolerated(0.18) benign(0.013) TCGA-EI-6882-01 1 6172270 6172270 G A CHD5 Silent p.D1690D 0.34 TCGA-EI-6882-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.48 TCGA-EI-6882-01 1 6520157 6520157 C A ESPN Missense_Mutation p.P839H 0.10 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 1 65858361 65858361 G A DNAJC6 Silent p.A572A 0.22 TCGA-EI-6882-01 1 71513269 71513269 C T PTGER3 5'UTR 0.44 TCGA-EI-6882-01 1 78435627 78435627 T - FUBP1 Frame_Shift_Del p.R65Dfs*3 0.28 TCGA-EI-6882-01 1 8418637 8418637 G A RERE Missense_Mutation p.R1320W 0.34 unknown(0) TCGA-EI-6882-01 1 85592210 85592210 A G WDR63 Missense_Mutation p.Q710R 0.14 tolerated(0.05) benign(0.014) TCGA-EI-6882-01 1 89844117 89844117 C T GBP6 Silent p.N190N 0.40 TCGA-EI-6882-01 1 9098983 9098983 G A SLC2A5 Silent p.F334F 0.46 TCGA-EI-6882-01 1 91851162 91851162 A - HFM1 Frame_Shift_Del p.S242Qfs*12 0.26 TCGA-EI-6882-01 1 92945998 92945998 G T GFI1 Silent p.S277S 0.17 TCGA-EI-6882-01 1 93169000 93169000 A - EVI5 Frame_Shift_Del p.F216Lfs*15 0.11 TCGA-EI-6882-01 1 94506940 94506940 G T ABCA4 Missense_Mutation p.S1116Y 0.34 deleterious(0) probably_damaging(0.954) TCGA-EI-6882-01 1 97544562 97544562 G A DPYD Silent p.G1016G 0.40 TCGA-EI-6882-01 1 984981 984981 G - AGRN Frame_Shift_Del p.C1519Afs*130 0.36 TCGA-EI-6882-01 20 10033881 10033881 T A ANKEF1 Silent p.P664P 0.09 TCGA-EI-6882-01 20 10279970 10279970 C T SNAP25 Silent p.S154S 0.15 TCGA-EI-6882-01 20 10639259 10639259 C T JAG1 Missense_Mutation p.R184H 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 20 16731850 16731850 T C OTOR 3'UTR 0.35 TCGA-EI-6882-01 20 19977393 19977393 G A RIN2 Silent p.A806A 0.38 TCGA-EI-6882-01 20 20269503 20269503 C A C20orf26 Missense_Mutation p.P1016Q 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 20 23350796 23350796 C T GZF1 Silent p.D618D 0.36 TCGA-EI-6882-01 20 25485550 25485550 C T NINL Missense_Mutation p.V228I 0.34 tolerated(1) benign(0.007) TCGA-EI-6882-01 20 2582822 2582822 C T TMC2 Missense_Mutation p.R430C 0.39 deleterious(0) probably_damaging(0.991) TCGA-EI-6882-01 20 26061852 26061852 C T FAM182A RNA 0.28 TCGA-EI-6882-01 20 2730272 2730272 C - EBF4 Frame_Shift_Del p.C253Afs*63 0.28 TCGA-EI-6882-01 20 30149440 30149442 GAA - HM13 In_Frame_Del p.K285del 0.24 TCGA-EI-6882-01 20 3017817 3017817 C T PTPRA Missense_Mutation p.T739M 0.42 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 20 30433104 30433104 C T FOXS1 Missense_Mutation p.R81H 0.41 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 20 31573687 31573687 C A SUN5 Missense_Mutation p.C251F 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 20 31644485 31644485 G A BPIFB3 Missense_Mutation p.V88I 0.41 tolerated(0.25) benign(0.034) TCGA-EI-6882-01 20 33862258 33862258 A G MMP24 Missense_Mutation p.D595G 0.16 deleterious(0.02) probably_damaging(0.949) TCGA-EI-6882-01 20 34797691 34797691 G A EPB41L1 Silent p.S650S 0.27 TCGA-EI-6882-01 20 36938904 36938904 G A BPI Missense_Mutation p.G133D 0.35 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6882-01 20 36975013 36975013 G A LBP Missense_Mutation p.A32T 0.24 deleterious(0.03) benign(0.187) TCGA-EI-6882-01 20 41306630 41306630 G C PTPRT Silent p.P343P 0.37 TCGA-EI-6882-01 20 42169903 42169904 - A L3MBTL1 3'UTR 0.33 TCGA-EI-6882-01 20 42806517 42806517 A G JPH2 Intron 0.44 TCGA-EI-6882-01 20 42972146 42972146 C A R3HDML Silent p.T170T 0.09 TCGA-EI-6882-01 20 43057088 43057088 G A HNF4A Missense_Mutation p.G415R 0.39 tolerated_low_confidence(0.16) probably_damaging(1) TCGA-EI-6882-01 20 43995684 43995684 G A SYS1 Missense_Mutation p.G134R 0.37 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 20 44596539 44596539 C T ZNF335 Silent p.P216P 0.36 TCGA-EI-6882-01 20 44686274 44686274 G A SLC12A5 3'UTR 0.56 TCGA-EI-6882-01 20 44983878 44983878 G A SLC35C2 Silent p.R137R 0.35 TCGA-EI-6882-01 20 45633627 45633627 G T EYA2 Missense_Mutation p.A68S 0.30 tolerated(0.2) possibly_damaging(0.61) TCGA-EI-6882-01 20 4707995 4707995 G A PRND 3'UTR 0.38 TCGA-EI-6882-01 20 47242406 47242406 G A PREX1 3'UTR 0.42 TCGA-EI-6882-01 20 47860396 47860396 G - DDX27 3'UTR 0.25 TCGA-EI-6882-01 20 50238633 50238633 C A ATP9A Missense_Mutation p.D699Y 0.26 tolerated(1) possibly_damaging(0.738) TCGA-EI-6882-01 20 5294607 5294607 C T PROKR2 Missense_Mutation p.V137I 0.41 tolerated(0.1) benign(0.216) TCGA-EI-6882-01 20 56227349 56227349 G - PMEPA1 Frame_Shift_Del p.S209Afs*61 0.43 TCGA-EI-6882-01 20 56227587 56227587 C T PMEPA1 Missense_Mutation p.R129H 0.50 tolerated(0.09) probably_damaging(0.994) TCGA-EI-6882-01 20 57289128 57289128 G A NPEPL1 Silent p.A427A 0.50 TCGA-EI-6882-01 20 57429341 57429341 G A GNAS Missense_Mutation p.G341R 0.32 tolerated_low_confidence(0.33) unknown(0) TCGA-EI-6882-01 20 57617862 57617862 G A SLMO2 5'UTR 0.58 TCGA-EI-6882-01 20 57766302 57766302 G A ZNF831 Silent p.P76P 0.38 TCGA-EI-6882-01 20 5943967 5943967 C A MCM8 Missense_Mutation p.S279R 0.36 deleterious(0.04) benign(0.007) TCGA-EI-6882-01 20 60578891 60578891 G A TAF4 Missense_Mutation p.P756L 0.22 probably_damaging(0.992) TCGA-EI-6882-01 20 60738567 60738567 G A SS18L1 Missense_Mutation p.G204S 0.16 tolerated_low_confidence(0.06) probably_damaging(0.947) TCGA-EI-6882-01 20 60884868 60884868 G A LAMA5 Missense_Mutation p.R3618W 0.46 benign(0.121) TCGA-EI-6882-01 20 61048554 61048554 G A GATA5 Nonsense_Mutation p.R202* 0.30 TCGA-EI-6882-01 20 61527926 61527926 G A DIDO1 Missense_Mutation p.R671W 0.32 probably_damaging(1) TCGA-EI-6882-01 20 61537096 61537096 C A DIDO1 Intron 0.21 TCGA-EI-6882-01 20 61939897 61939897 T G COL20A1 Missense_Mutation p.L260R 0.15 deleterious(0) probably_damaging(0.989) TCGA-EI-6882-01 20 62166303 62166303 A G PTK6 Missense_Mutation p.Y114H 0.22 tolerated(0.06) probably_damaging(0.976) TCGA-EI-6882-01 20 62374129 62374129 C T SLC2A4RG Silent p.I346I 0.40 TCGA-EI-6882-01 20 62708247 62708247 C T RGS19 5'UTR 0.38 TCGA-EI-6882-01 20 7886918 7886918 C T HAO1 Missense_Mutation p.D202N 0.41 tolerated(0.3) benign(0.001) TCGA-EI-6882-01 21 10933899 10933899 G A TPTE Missense_Mutation p.A327V 0.04 deleterious(0.02) benign(0.405) TCGA-EI-6882-01 21 10933929 10933929 A C TPTE Missense_Mutation p.V317G 0.04 tolerated(0.37) benign(0.216) TCGA-EI-6882-01 21 19666603 19666603 C T TMPRSS15 Missense_Mutation p.A824T 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 21 28296371 28296371 G A ADAMTS5 3'UTR 0.26 TCGA-EI-6882-01 21 31971176 31971176 G A KRTAP6-2 Silent p.Y6Y 0.33 TCGA-EI-6882-01 21 32253334 32253334 T C KRTAP11-1 3'UTR 0.28 TCGA-EI-6882-01 21 32638629 32638629 C T TIAM1 Silent p.P220P 0.42 TCGA-EI-6882-01 21 34400900 34400900 A G OLIG2 3'UTR 0.08 TCGA-EI-6882-01 21 35190760 35190760 A G ITSN1 Missense_Mutation p.I973V 0.36 tolerated(0.31) benign(0.002) TCGA-EI-6882-01 21 35476324 35476324 C T SLC5A3 3'UTR 0.14 TCGA-EI-6882-01 21 37692505 37692505 C T MORC3 5'UTR 0.37 TCGA-EI-6882-01 21 40582064 40582064 C T BRWD1 Missense_Mutation p.D1352N 0.38 tolerated(0.08) possibly_damaging(0.496) TCGA-EI-6882-01 21 42780024 42780024 A - MX2 Frame_Shift_Del p.N673Ifs*110 0.29 TCGA-EI-6882-01 21 43815520 43815520 C - TMPRSS3 Frame_Shift_Del p.E3Kfs*22 0.21 TCGA-EI-6882-01 21 43988537 43988537 C T SLC37A1 Missense_Mutation p.T471M 0.44 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 21 45053268 45053268 G A HSF2BP Missense_Mutation p.A109V 0.07 tolerated(0.28) probably_damaging(0.972) TCGA-EI-6882-01 21 45987865 45987865 G A TSPEAR Missense_Mutation p.A36V 0.48 deleterious(0) possibly_damaging(0.485) TCGA-EI-6882-01 21 46602578 46602578 G A ADARB1 Missense_Mutation p.R386H 0.18 deleterious(0.04) benign(0.417) TCGA-EI-6882-01 21 47418319 47418319 C T COL6A1 Missense_Mutation p.P528L 0.35 deleterious(0.02) probably_damaging(0.991) TCGA-EI-6882-01 21 47538527 47538527 G - COL6A2 Splice_Site p.X374_splice 0.24 TCGA-EI-6882-01 21 47588480 47588480 G - SPATC1L Frame_Shift_Del p.L96Cfs*42 0.29 TCGA-EI-6882-01 21 47831279 47831279 C T PCNT Silent p.S1764S 0.54 TCGA-EI-6882-01 22 17585664 17585664 G A IL17RA Missense_Mutation p.A299T 0.38 tolerated(0.2) benign(0.006) TCGA-EI-6882-01 22 18370087 18370087 A G MICAL3 Splice_Site p.X668_splice 0.10 TCGA-EI-6882-01 22 18904407 18904407 G A PRODH Missense_Mutation p.R508C 0.33 tolerated(0.11) benign(0.013) TCGA-EI-6882-01 22 19492944 19492944 G A CDC45 Missense_Mutation p.R287Q 0.34 tolerated(0.08) benign(0.059) TCGA-EI-6882-01 22 19965023 19965023 G A ARVCF Silent p.A595A 0.44 TCGA-EI-6882-01 22 20386628 20386628 C T PI4KAP1 RNA 0.11 TCGA-EI-6882-01 22 22277807 22277807 G A PPM1F Silent p.A341A 0.31 TCGA-EI-6882-01 22 24036433 24036433 C T RGL4 Intron 0.40 TCGA-EI-6882-01 22 24175760 24175760 G A SMARCB1 Missense_Mutation p.E330K 0.37 deleterious(0.04) possibly_damaging(0.851) TCGA-EI-6882-01 22 25577693 25577693 C T KIAA1671 Missense_Mutation p.S1701L 0.41 deleterious(0) probably_damaging(0.938) TCGA-EI-6882-01 22 26100176 26100176 G T ADRBK2 Missense_Mutation p.G443V 0.35 deleterious(0) probably_damaging(0.959) TCGA-EI-6882-01 22 26159234 26159234 C - MYO18B Frame_Shift_Del p.P27Lfs*32 0.31 TCGA-EI-6882-01 22 28378123 28378123 G - TTC28 3'UTR 0.19 TCGA-EI-6882-01 22 28378347 28378347 G A TTC28 Silent p.T2436T 0.43 TCGA-EI-6882-01 22 28426270 28426270 C T TTC28 Silent p.S1339S 0.43 TCGA-EI-6882-01 22 29745285 29745285 G A AP1B1 Silent p.G453G 0.33 TCGA-EI-6882-01 22 31520914 31520914 G A INPP5J Intron 0.38 TCGA-EI-6882-01 22 32804750 32804750 C T RTCB Missense_Mutation p.R55Q 0.39 tolerated(0.36) benign(0.009) TCGA-EI-6882-01 22 36205875 36205875 G A RBFOX2 Silent p.H138H 0.40 TCGA-EI-6882-01 22 37637151 37637151 C T RAC2 Intron 0.47 TCGA-EI-6882-01 22 37770428 37770428 C T ELFN2 Missense_Mutation p.V383I 0.36 tolerated(0.16) benign(0.002) TCGA-EI-6882-01 22 37900249 37900249 G - CARD10 Frame_Shift_Del p.S527Vfs*31 0.25 TCGA-EI-6882-01 22 38131003 38131003 C T TRIOBP Nonsense_Mutation p.R1554* 0.28 TCGA-EI-6882-01 22 38693079 38693079 C T CSNK1E Intron 0.27 TCGA-EI-6882-01 22 38823944 38823944 G A KCNJ4 Missense_Mutation p.A65V 0.34 tolerated(0.47) benign(0.031) TCGA-EI-6882-01 22 39122436 39122436 G A GTPBP1 Silent p.A464A 0.38 TCGA-EI-6882-01 22 39421294 39421294 C T APOBEC3D Missense_Mutation p.R144W 0.30 deleterious(0) probably_damaging(0.989) TCGA-EI-6882-01 22 39627787 39627787 G A PDGFB Missense_Mutation p.T99M 0.44 deleterious(0.01) probably_damaging(0.942) TCGA-EI-6882-01 22 39826224 39826224 G A TAB1 Silent p.P504P 0.31 TCGA-EI-6882-01 22 39883619 39883619 G A MGAT3 Silent p.A89A 0.17 TCGA-EI-6882-01 22 40521847 40521847 C T TNRC6B Missense_Mutation p.S9L 0.25 deleterious_low_confidence(0) benign(0.001) TCGA-EI-6882-01 22 41969742 41969742 C A CSDC2 Missense_Mutation p.P87H 0.48 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 22 42095623 42095623 C A MEI1 Silent p.A27A 0.32 TCGA-EI-6882-01 22 42525162 42525162 G A CYP2D6 Silent p.P126P 0.42 TCGA-EI-6882-01 22 42610358 42610358 C T TCF20 Silent p.P318P 0.08 TCGA-EI-6882-01 22 43435805 43435805 C T TTLL1 Missense_Mutation p.A417T 0.31 tolerated_low_confidence(0.55) benign(0) TCGA-EI-6882-01 22 46746312 46746313 - A TRMU Frame_Shift_Ins p.I203Nfs*4 0.10 TCGA-EI-6882-01 22 47059035 47059035 A G GRAMD4 Missense_Mutation p.T189A 0.39 tolerated(0.32) benign(0.001) TCGA-EI-6882-01 22 50217023 50217023 C T BRD1 Missense_Mutation p.V315M 0.18 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 22 50297835 50297835 G A ALG12 Silent p.S410S 0.20 TCGA-EI-6882-01 22 50301585 50301585 G A ALG12 Missense_Mutation p.P259L 0.32 possibly_damaging(0.879) TCGA-EI-6882-01 22 50615710 50615710 G A PANX2 Missense_Mutation p.R190H 0.37 deleterious(0.03) probably_damaging(0.984) TCGA-EI-6882-01 22 50687117 50687117 C T HDAC10 Missense_Mutation p.G294S 0.39 tolerated(0.08) possibly_damaging(0.804) TCGA-EI-6882-01 22 50885799 50885799 C T SBF1 Silent p.T1845T 0.30 TCGA-EI-6882-01 22 50943361 50943362 - C LMF2 Frame_Shift_Ins p.A436Gfs*31 0.21 TCGA-EI-6882-01 2 10192479 10192479 C T KLF11 Missense_Mutation p.R462C 0.51 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 2 103378561 103378561 G A TMEM182 5'UTR 0.40 TCGA-EI-6882-01 2 108917263 108917263 C T SULT1C2 Intron 0.33 TCGA-EI-6882-01 2 109092300 109092327 CTATAAGGTAAAAAATAGTCATTTTAAT - GCC2 Splice_Site p.X1018_splice 0.22 TCGA-EI-6882-01 2 112945174 112945174 G A FBLN7 3'UTR 0.57 TCGA-EI-6882-01 2 116572517 116572517 C T DPP10 Nonsense_Mutation p.R621* 0.36 TCGA-EI-6882-01 2 11932039 11932039 G T LPIN1 Splice_Site p.X621_splice 0.44 TCGA-EI-6882-01 2 120129917 120129917 C T DBI 3'UTR 0.30 TCGA-EI-6882-01 2 121712927 121712927 G A GLI2 Silent p.A188A 0.32 TCGA-EI-6882-01 2 121748294 121748294 G A GLI2 3'UTR 0.44 TCGA-EI-6882-01 2 125262114 125262114 C T CNTNAP5 Silent p.R435R 0.42 TCGA-EI-6882-01 2 125672807 125672808 AC - CNTNAP5 3'UTR 0.17 TCGA-EI-6882-01 2 127811493 127811493 C T BIN1 Silent p.T409T 0.12 TCGA-EI-6882-01 2 128186436 128186436 G A PROC Missense_Mutation p.V434I 0.42 tolerated(0.56) benign(0.088) TCGA-EI-6882-01 2 128464065 128464065 G A WDR33 Silent p.D1281D 0.49 TCGA-EI-6882-01 2 128477694 128477694 C T WDR33 Missense_Mutation p.M635I 0.34 tolerated_low_confidence(0.05) unknown(0) TCGA-EI-6882-01 2 130941490 130941490 C - MZT2B Intron 0.28 TCGA-EI-6882-01 2 131797879 131797879 G A ARHGEF4 Missense_Mutation p.E324K 0.29 deleterious(0.03) benign(0.446) TCGA-EI-6882-01 2 131805906 131805906 A G FAM168B 3'UTR 0.13 TCGA-EI-6882-01 2 132259045 132259045 C T AC093838.4 RNA 0.44 TCGA-EI-6882-01 2 135621089 135621089 C T ACMSD Missense_Mutation p.A125V 0.10 deleterious(0.02) possibly_damaging(0.784) TCGA-EI-6882-01 2 136481608 136481608 C T R3HDM1 Missense_Mutation p.R1016W 0.47 deleterious(0) probably_damaging(0.977) TCGA-EI-6882-01 2 137639847 137639847 T A THSD7B Missense_Mutation p.H33Q 0.38 tolerated(0.84) unknown(0) TCGA-EI-6882-01 2 139428830 139428830 G T NXPH2 Missense_Mutation p.L153M 0.17 tolerated(0.09) benign(0.196) TCGA-EI-6882-01 2 145156919 145156919 G A ZEB2 Missense_Mutation p.A612V 0.38 tolerated(0.13) probably_damaging(0.998) TCGA-EI-6882-01 2 152473981 152473981 C T NEB Missense_Mutation p.R3693H 0.39 benign(0.059) TCGA-EI-6882-01 2 154334790 154334790 G A RPRM Missense_Mutation p.P97L 0.39 deleterious_low_confidence(0) probably_damaging(0.96) TCGA-EI-6882-01 2 157184960 157184960 T C NR4A2 Missense_Mutation p.Y317C 0.08 deleterious(0) probably_damaging(0.992) TCGA-EI-6882-01 2 159537313 159537313 T - PKP4 3'UTR 0.65 TCGA-EI-6882-01 2 1652489 1652489 G A PXDN Silent p.I1021I 0.29 TCGA-EI-6882-01 2 1653368 1653368 G A PXDN Silent p.R728R 0.36 TCGA-EI-6882-01 2 165772428 165772428 C T SLC38A11 Missense_Mutation p.G169R 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 2 170359676 170359676 G T BBS5 Silent p.T296T 0.33 TCGA-EI-6882-01 2 174062830 174062830 A - MLTK Frame_Shift_Del p.N222Tfs*4 0.26 TCGA-EI-6882-01 2 176988674 176988674 C T HOXD9 Missense_Mutation p.A277V 0.15 deleterious(0.03) benign(0.339) TCGA-EI-6882-01 2 178097916 178097916 T C NFE2L2 Intron 0.09 TCGA-EI-6882-01 2 178936900 178936900 C T PDE11A Missense_Mutation p.G89S 0.37 tolerated(0.72) benign(0) TCGA-EI-6882-01 2 179415737 179415737 C T TTN Silent p.P30507P 0.36 TCGA-EI-6882-01 2 179429003 179429003 C T TTN Missense_Mutation p.V27286I 0.41 TCGA-EI-6882-01 2 179442017 179442017 C T TTN Silent p.A23015A 0.39 TCGA-EI-6882-01 2 179443679 179443679 G A TTN Missense_Mutation p.T22693M 0.36 TCGA-EI-6882-01 2 179444445 179444445 T G TTN Missense_Mutation p.E22493D 0.12 TCGA-EI-6882-01 2 179452386 179452386 A G TTN Missense_Mutation p.V21217A 0.36 TCGA-EI-6882-01 2 179494084 179494084 C T TTN Missense_Mutation p.E14790K 0.40 TCGA-EI-6882-01 2 179615258 179615258 C A TTN Intron 0.43 TCGA-EI-6882-01 2 180809888 180809888 G A CWC22 Nonsense_Mutation p.R899* 0.33 TCGA-EI-6882-01 2 182374525 182374525 G - ITGA4 Frame_Shift_Del p.M612Ifs*5 0.26 TCGA-EI-6882-01 2 185803278 185803278 A C ZNF804A Missense_Mutation p.Y1052S 0.39 deleterious(0) probably_damaging(0.981) TCGA-EI-6882-01 2 187511448 187511448 A - ITGAV Frame_Shift_Del p.G401Efs*13 0.22 TCGA-EI-6882-01 2 189916906 189916906 C T COL5A2 Missense_Mutation p.G921S 0.08 unknown(0) TCGA-EI-6882-01 2 190327229 190327229 C T WDR75 Silent p.G266G 0.33 TCGA-EI-6882-01 2 191843725 191843725 C T STAT1 Missense_Mutation p.C577Y 0.43 tolerated(1) benign(0.013) TCGA-EI-6882-01 2 196822062 196822062 A G DNAH7 Missense_Mutation p.S1001P 0.11 tolerated(0.07) benign(0.356) TCGA-EI-6882-01 2 201284085 201284085 A - SPATS2L Frame_Shift_Del p.N105Tfs*4 0.15 TCGA-EI-6882-01 2 202494016 202494016 G A TMEM237 Missense_Mutation p.A269V 0.37 deleterious(0.02) possibly_damaging(0.682) TCGA-EI-6882-01 2 207041445 207041445 C T GPR1 Missense_Mutation p.R176Q 0.13 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 2 20823793 20823793 T C HS1BP3 Splice_Site p.X262_splice 0.13 TCGA-EI-6882-01 2 209010629 209010629 C T CRYGB Missense_Mutation p.G41S 0.36 deleterious(0.02) probably_damaging(0.965) TCGA-EI-6882-01 2 210791693 210791693 G A UNC80 Missense_Mutation p.R1864Q 0.40 probably_damaging(0.982) TCGA-EI-6882-01 2 210800475 210800475 C T UNC80 Silent p.C2006C 0.28 TCGA-EI-6882-01 2 211319885 211319885 G A LANCL1 Missense_Mutation p.A118V 0.41 deleterious(0) probably_damaging(0.942) TCGA-EI-6882-01 2 21235202 21235202 C T APOB Missense_Mutation p.R1513Q 0.10 benign(0) TCGA-EI-6882-01 2 214239746 214239746 G A SPAG16 Missense_Mutation p.R282H 0.35 tolerated(0.27) benign(0.011) TCGA-EI-6882-01 2 216269191 216269191 A C FN1 Silent p.P1058P 0.24 TCGA-EI-6882-01 2 217525492 217525492 C T IGFBP2 Nonsense_Mutation p.R219* 0.53 TCGA-EI-6882-01 2 219128211 219128211 C T GPBAR1 Missense_Mutation p.P255L 0.49 tolerated(0.35) benign(0.007) TCGA-EI-6882-01 2 219137484 219137486 GAG - PNKD Intron 0.30 TCGA-EI-6882-01 2 219259672 219259672 G A SLC11A1 Missense_Mutation p.G523R 0.62 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 2 219677005 219677005 G A CYP27A1 Silent p.A169A 0.43 TCGA-EI-6882-01 2 220078017 220078017 C T ABCB6 Missense_Mutation p.R584H 0.56 tolerated(0.6) benign(0) TCGA-EI-6882-01 2 220192253 220192253 G A RESP18 Nonsense_Mutation p.Q225* 0.12 TCGA-EI-6882-01 2 220379831 220379831 A G ASIC4 Missense_Mutation p.S256G 0.25 deleterious(0) possibly_damaging(0.76) TCGA-EI-6882-01 2 220404539 220404539 C T CHPF Missense_Mutation p.A632T 0.21 tolerated(0.73) benign(0.025) TCGA-EI-6882-01 2 220471836 220471836 G A STK11IP Missense_Mutation p.R410Q 0.30 tolerated(0.3) probably_damaging(0.998) TCGA-EI-6882-01 2 223158931 223158931 C T PAX3 Missense_Mutation p.E181K 0.30 tolerated(0.11) benign(0.176) TCGA-EI-6882-01 2 223163400 223163400 C T PAX3 5'UTR 0.37 TCGA-EI-6882-01 2 226491717 226491717 C T NYAP2 Missense_Mutation p.A568V 0.29 tolerated(0.23) benign(0.005) TCGA-EI-6882-01 2 227663397 227663397 G A IRS1 Missense_Mutation p.R20C 0.40 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 2 227872092 227872092 C A COL4A4 Missense_Mutation p.Q1674H 0.34 unknown(0) TCGA-EI-6882-01 2 228217228 228217228 A C MFF Splice_Site p.X251_splice 0.20 TCGA-EI-6882-01 2 230632286 230632286 G A TRIP12 Missense_Mutation p.S1988L 0.17 deleterious(0) probably_damaging(0.994) TCGA-EI-6882-01 2 231775405 231775405 C T GPR55 Silent p.P91P 0.60 TCGA-EI-6882-01 2 233198650 233198650 G A DIS3L2 Missense_Mutation p.R704H 0.46 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 2 234871929 234871929 G A TRPM8 Missense_Mutation p.V553M 0.36 tolerated(0.11) benign(0.105) TCGA-EI-6882-01 2 236949449 236949449 C T AGAP1 Missense_Mutation p.R619C 0.34 deleterious(0.02) benign(0.037) TCGA-EI-6882-01 2 238303387 238303387 C T COL6A3 Silent p.A184A 0.40 TCGA-EI-6882-01 2 239090711 239090711 G A ILKAP Silent p.N277N 0.39 TCGA-EI-6882-01 2 239142270 239142270 G A HES6 3'Flank 0.36 TCGA-EI-6882-01 2 239344456 239344456 G A ASB1 Missense_Mutation p.R99Q 0.44 tolerated(0.58) benign(0.019) TCGA-EI-6882-01 2 239975206 239975206 C T HDAC4 Silent p.T1055T 0.50 TCGA-EI-6882-01 2 241463316 241463316 C T ANKMY1 Silent p.A517A 0.29 TCGA-EI-6882-01 2 241700703 241700703 C A KIF1A Missense_Mutation p.W736C 0.10 deleterious(0) probably_damaging(0.991) TCGA-EI-6882-01 2 242196020 242196020 C T HDLBP Missense_Mutation p.E218K 0.34 tolerated(0.07) possibly_damaging(0.459) TCGA-EI-6882-01 2 242196179 242196179 C T HDLBP Missense_Mutation p.V165I 0.12 tolerated(1) benign(0.139) TCGA-EI-6882-01 2 242206239 242206239 G A HDLBP Nonsense_Mutation p.R16* 0.43 TCGA-EI-6882-01 2 24247031 24247031 C T MFSD2B Silent p.L460L 0.47 TCGA-EI-6882-01 2 25013257 25013257 A G PTRHD1 3'UTR 0.21 TCGA-EI-6882-01 2 25354312 25354312 C T EFR3B Missense_Mutation p.R309C 0.18 deleterious(0) possibly_damaging(0.768) TCGA-EI-6882-01 2 27656146 27656146 G A NRBP1 Silent p.S2S 0.48 TCGA-EI-6882-01 2 31457528 31457529 - C EHD3 Frame_Shift_Ins p.E16Rfs*8 0.22 TCGA-EI-6882-01 2 31620539 31620539 C T XDH Missense_Mutation p.A164T 0.45 tolerated(0.75) benign(0.002) TCGA-EI-6882-01 2 3391416 3391416 G A TRAPPC12 Missense_Mutation p.E8K 0.37 tolerated_low_confidence(0.67) unknown(0) TCGA-EI-6882-01 2 3653730 3653730 C T COLEC11 Intron 0.44 TCGA-EI-6882-01 2 39046071 39046071 C T DHX57 Missense_Mutation p.R1140H 0.34 tolerated(0.55) benign(0.002) TCGA-EI-6882-01 2 39417599 39417599 G A CDKL4 Nonsense_Mutation p.R167* 0.41 TCGA-EI-6882-01 2 43804362 43804362 C T THADA Missense_Mutation p.R279H 0.36 tolerated(0.39) benign(0.001) TCGA-EI-6882-01 2 44078854 44078854 C T ABCG8 Missense_Mutation p.R152C 0.33 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 2 44428936 44428936 C T PPM1B Missense_Mutation p.R200C 0.43 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 2 45233324 45233324 C G SIX2 Silent p.V287V 0.39 TCGA-EI-6882-01 2 47693884 47693884 T - MSH2 Frame_Shift_Del p.R534Vfs*9 0.27 TCGA-EI-6882-01 2 55561622 55561622 T - CCDC88A Frame_Shift_Del p.I779Sfs*4 0.31 TCGA-EI-6882-01 2 5836458 5836458 C T SOX11 3'UTR 0.41 TCGA-EI-6882-01 2 60679705 60679705 T G BCL11A 3'Flank 0.25 TCGA-EI-6882-01 2 60689444 60689444 G A BCL11A Silent p.S201S 0.42 TCGA-EI-6882-01 2 61561037 61561037 G A USP34 Silent p.Y938Y 0.40 TCGA-EI-6882-01 2 63206342 63206342 G A EHBP1 Missense_Mutation p.R862H 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.548) TCGA-EI-6882-01 2 68609707 68609707 A G PLEK Silent p.K138K 0.50 TCGA-EI-6882-01 2 69034415 69034415 C T ARHGAP25 Silent p.G159G 0.44 TCGA-EI-6882-01 2 69053231 69053231 C T ARHGAP25 Missense_Mutation p.R616C 0.14 tolerated(0.05) benign(0.427) TCGA-EI-6882-01 2 73118535 73118535 C T SPR Nonsense_Mutation p.R219* 0.40 TCGA-EI-6882-01 2 79253276 79253276 T C REG3G Silent p.I19I 0.25 TCGA-EI-6882-01 2 85262221 85262221 G A KCMF1 Silent p.T89T 0.09 TCGA-EI-6882-01 2 87017538 87017538 G A CD8A Missense_Mutation p.R106C 0.48 deleterious(0) probably_damaging(0.939) TCGA-EI-6882-01 2 89266215 89266215 G A IGKV1-6 Missense_Mutation p.L15F 0.34 tolerated(0.08) possibly_damaging(0.537) TCGA-EI-6882-01 2 9528643 9528643 C - ASAP2 Frame_Shift_Del p.P786Rfs*25 0.32 TCGA-EI-6882-01 2 9588429 9588429 C T CPSF3 Missense_Mutation p.R449W 0.40 deleterious(0.02) possibly_damaging(0.878) TCGA-EI-6882-01 2 95947066 95947066 G A PROM2 Missense_Mutation p.V502M 0.39 tolerated(0.09) benign(0.342) TCGA-EI-6882-01 2 96964406 96964406 A G SNRNP200 Missense_Mutation p.L306P 0.24 deleterious(0) probably_damaging(0.992) TCGA-EI-6882-01 2 97216420 97216420 G - ARID5A Frame_Shift_Del p.A175Pfs*17 0.11 TCGA-EI-6882-01 2 97285259 97285259 C T KANSL3 Missense_Mutation p.R167H 0.34 deleterious(0) probably_damaging(0.994) TCGA-EI-6882-01 2 97494737 97494737 C T CNNM3 Missense_Mutation p.T642M 0.25 deleterious(0) possibly_damaging(0.893) TCGA-EI-6882-01 2 97884957 97884957 T C ANKRD36 Missense_Mutation p.M1310T 0.13 tolerated(0.07) possibly_damaging(0.684) TCGA-EI-6882-01 2 99812274 99812274 C T MRPL30 3'UTR 0.21 TCGA-EI-6882-01 3 100387911 100387911 G A GPR128 Missense_Mutation p.V700I 0.41 tolerated(0.37) benign(0.021) TCGA-EI-6882-01 3 105495247 105495248 - A CBLB Frame_Shift_Ins p.G187Wfs*17 0.13 TCGA-EI-6882-01 3 111795795 111795795 G A TMPRSS7 Silent p.P550P 0.40 TCGA-EI-6882-01 3 111983170 111983170 C T SLC9C1 Missense_Mutation p.R300H 0.38 tolerated(0.12) possibly_damaging(0.756) TCGA-EI-6882-01 3 112711969 112711969 C A GTPBP8 Missense_Mutation p.P145T 0.34 deleterious(0) probably_damaging(0.929) TCGA-EI-6882-01 3 114012912 114012912 C A TIGIT Missense_Mutation p.R2S 0.43 tolerated(0.07) benign(0.009) TCGA-EI-6882-01 3 121413352 121413352 G A GOLGB1 Silent p.P2006P 0.34 TCGA-EI-6882-01 3 124646777 124646777 G T MUC13 Missense_Mutation p.P38H 0.31 deleterious(0.01) probably_damaging(0.953) TCGA-EI-6882-01 3 126135183 126135183 C T CCDC37 Missense_Mutation p.R84W 0.33 deleterious(0) possibly_damaging(0.794) TCGA-EI-6882-01 3 126190850 126190850 A G ZXDC Missense_Mutation p.F369L 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 3 1262422 1262422 T - CNTN6 Frame_Shift_Del p.P38Lfs*11 0.10 TCGA-EI-6882-01 3 126723458 126723458 C T PLXNA1 Missense_Mutation p.T508M 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-EI-6882-01 3 129127618 129127618 C T EFCAB12 Silent p.P373P 0.47 TCGA-EI-6882-01 3 129170834 129170834 G A IFT122 Silent p.A62A 0.42 TCGA-EI-6882-01 3 129234388 129234388 G T IFT122 Missense_Mutation p.G1122C 0.19 deleterious(0) possibly_damaging(0.762) TCGA-EI-6882-01 3 129247749 129247749 C T RHO Missense_Mutation p.T58M 0.40 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 3 12977982 12977982 G A IQSEC1 Silent p.F192F 0.33 TCGA-EI-6882-01 3 133483076 133483076 G A TF Silent p.A418A 0.37 TCGA-EI-6882-01 3 134264516 134264516 G A CEP63 Missense_Mutation p.R215Q 0.41 deleterious(0) probably_damaging(0.966) TCGA-EI-6882-01 3 138183305 138183305 G A ESYT3 Missense_Mutation p.R345Q 0.13 tolerated(1) benign(0.104) TCGA-EI-6882-01 3 1443127 1443127 A C CNTN6 Missense_Mutation p.Q905H 0.37 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 3 147113961 147113961 C G ZIC4 Missense_Mutation p.Q172H 0.18 deleterious(0.03) probably_damaging(0.965) TCGA-EI-6882-01 3 147128735 147128735 A G ZIC1 Missense_Mutation p.E279G 0.29 deleterious(0.02) benign(0.03) TCGA-EI-6882-01 3 14922138 14922138 G A FGD5 Splice_Site p.X906_splice 0.29 TCGA-EI-6882-01 3 155838426 155838426 C T KCNAB1 Missense_Mutation p.A9V 0.44 tolerated_low_confidence(0.78) benign(0) TCGA-EI-6882-01 3 164908009 164908009 G A SLITRK3 Missense_Mutation p.R204C 0.36 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 3 165548517 165548517 G T BCHE Missense_Mutation p.P102Q 0.37 deleterious(0.01) probably_damaging(0.95) TCGA-EI-6882-01 3 170013720 170013720 G A PRKCI Missense_Mutation p.R480H 0.40 tolerated(0.31) benign(0.003) TCGA-EI-6882-01 3 179470163 179470163 T C USP13 Splice_Site p.X600_splice 0.06 TCGA-EI-6882-01 3 182603763 182603763 T - ATP11B Frame_Shift_Del p.L895Yfs*19 0.21 TCGA-EI-6882-01 3 182733174 182733174 T - MCCC1 3'UTR 0.10 TCGA-EI-6882-01 3 182817245 182817245 C A MCCC1 5'UTR 0.17 TCGA-EI-6882-01 3 183888669 183888669 C T DVL3 3'UTR 0.71 TCGA-EI-6882-01 3 184024615 184024615 G A PSMD2 Missense_Mutation p.G676D 0.11 tolerated(0.06) possibly_damaging(0.884) TCGA-EI-6882-01 3 184041734 184041734 C T EIF4G1 Missense_Mutation p.A821V 0.30 deleterious(0) possibly_damaging(0.53) TCGA-EI-6882-01 3 184294789 184294789 G A EPHB3 Missense_Mutation p.R391H 0.20 tolerated(0.21) benign(0.177) TCGA-EI-6882-01 3 187388044 187388044 C T SST Silent p.A12A 0.44 TCGA-EI-6882-01 3 189713134 189713134 G A LEPREL1 Missense_Mutation p.A193V 0.33 tolerated(0.26) benign(0.011) TCGA-EI-6882-01 3 191078926 191078926 G A CCDC50 Missense_Mutation p.R103H 0.36 deleterious(0) probably_damaging(0.991) TCGA-EI-6882-01 3 192125823 192125823 G A FGF12 Missense_Mutation p.R64W 0.47 deleterious(0.01) possibly_damaging(0.881) TCGA-EI-6882-01 3 192516769 192516769 G A MB21D2 Silent p.S294S 0.36 TCGA-EI-6882-01 3 195513233 195513233 C T MUC4 Missense_Mutation p.G1740S 0.08 benign(0.147) TCGA-EI-6882-01 3 197880184 197880184 T - FAM157A RNA 0.09 TCGA-EI-6882-01 3 20017562 20017562 T A RAB5A Missense_Mutation p.N113K 0.36 tolerated(0.84) benign(0.046) TCGA-EI-6882-01 3 23997574 23997574 G A NR1D2 Silent p.A110A 0.39 TCGA-EI-6882-01 3 25638135 25638135 C A RARB 3'UTR 0.25 TCGA-EI-6882-01 3 3189192 3189192 T - TRNT1 Frame_Shift_Del p.S289Hfs*5 0.26 TCGA-EI-6882-01 3 33866811 33866811 T - PDCD6IP Frame_Shift_Del p.L201* 0.26 TCGA-EI-6882-01 3 35763248 35763248 A G ARPP21 Missense_Mutation p.S349G 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 3 36874439 36874439 G T TRANK1 Missense_Mutation p.P2168H 0.43 deleterious(0) probably_damaging(0.982) TCGA-EI-6882-01 3 36875239 36875239 A G TRANK1 Silent p.S1901S 0.33 TCGA-EI-6882-01 3 42132805 42132805 C A TRAK1 5'UTR 0.23 TCGA-EI-6882-01 3 42264785 42264785 C T TRAK1 Silent p.Y806Y 0.32 TCGA-EI-6882-01 3 42599160 42599160 T C SEC22C Silent p.T185T 0.11 TCGA-EI-6882-01 3 44636053 44636053 G A ZNF660 Missense_Mutation p.R123Q 0.14 tolerated(1) benign(0.408) TCGA-EI-6882-01 3 44775874 44775874 A - ZNF501 5'UTR 0.70 TCGA-EI-6882-01 3 46593058 46593058 G A LRRC2 Silent p.F8F 0.43 TCGA-EI-6882-01 3 47286970 47286970 G A KIF9 Missense_Mutation p.R441C 0.32 tolerated(0.1) benign(0.022) TCGA-EI-6882-01 3 47454400 47454400 C A PTPN23 Missense_Mutation p.P1546T 0.27 unknown(0) TCGA-EI-6882-01 3 48511130 48511130 G A SHISA5 Missense_Mutation p.R143C 0.40 deleterious(0) probably_damaging(0.996) TCGA-EI-6882-01 3 48694767 48694767 C T CELSR3 Missense_Mutation p.V1255M 0.53 deleterious(0) probably_damaging(0.947) TCGA-EI-6882-01 3 48697411 48697411 T C CELSR3 Missense_Mutation p.D886G 0.42 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 3 48956622 48956623 - T ARIH2OS 5'UTR 0.33 TCGA-EI-6882-01 3 49043534 49043534 G A P4HTM Missense_Mutation p.R462Q 0.31 tolerated(0.28) probably_damaging(0.943) TCGA-EI-6882-01 3 49162351 49162351 T C LAMB2 Silent p.R964R 0.38 TCGA-EI-6882-01 3 49739306 49739306 C T RNF123 Silent p.Y486Y 0.52 TCGA-EI-6882-01 3 52257175 52257175 G T TLR9 Missense_Mutation p.P540Q 0.12 deleterious(0.01) possibly_damaging(0.805) TCGA-EI-6882-01 3 52486123 52486123 G A TNNC1 Silent p.D67D 0.50 TCGA-EI-6882-01 3 52550119 52550119 G - STAB1 Frame_Shift_Del p.V1339Cfs*252 0.28 TCGA-EI-6882-01 3 52820407 52820407 C T ITIH1 Missense_Mutation p.R564C 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 3 58121893 58121893 C T FLNB Missense_Mutation p.T1651M 0.35 deleterious(0) possibly_damaging(0.893) TCGA-EI-6882-01 3 62501742 62501742 T G CADPS Missense_Mutation p.K858T 0.13 tolerated(0.07) possibly_damaging(0.728) TCGA-EI-6882-01 3 62543142 62543142 G A CADPS Missense_Mutation p.A564V 0.09 deleterious(0) benign(0.241) TCGA-EI-6882-01 3 64084927 64084927 A T PRICKLE2 Missense_Mutation p.S779T 0.20 tolerated(0.07) probably_damaging(0.995) TCGA-EI-6882-01 3 64085260 64085260 G A PRICKLE2 Missense_Mutation p.R668C 0.38 deleterious(0) benign(0.037) TCGA-EI-6882-01 3 69056970 69056970 G A EOGT Missense_Mutation p.T105M 0.39 deleterious(0.02) benign(0.357) TCGA-EI-6882-01 3 73114241 73114241 C T PPP4R2 Missense_Mutation p.R293W 0.40 deleterious(0) possibly_damaging(0.591) TCGA-EI-6882-01 3 7620433 7620433 C T GRM7 Missense_Mutation p.R614C 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6882-01 3 79174648 79174648 T G ROBO1 Missense_Mutation p.I44L 0.33 tolerated_low_confidence(0.53) benign(0) TCGA-EI-6882-01 3 87027685 87027685 G - VGLL3 Frame_Shift_Del p.L132Yfs*80 0.23 TCGA-EI-6882-01 3 87039788 87039788 C T VGLL3 Missense_Mutation p.A36T 0.34 tolerated(0.19) benign(0.054) TCGA-EI-6882-01 3 89448552 89448552 G A EPHA3 Missense_Mutation p.V506I 0.40 tolerated(0.29) benign(0.011) TCGA-EI-6882-01 3 9515105 9515106 - A SETD5 Frame_Shift_Ins p.F1130Ifs*36 0.30 TCGA-EI-6882-01 3 97202781 97202781 G A EPHA6 Missense_Mutation p.R693H 0.41 tolerated(0.11) benign(0.004) TCGA-EI-6882-01 3 9987998 9987998 A C PRRT3 Silent p.A953A 0.12 TCGA-EI-6882-01 4 10090337 10090337 C T WDR1 Missense_Mutation p.R196Q 0.37 deleterious(0.01) possibly_damaging(0.871) TCGA-EI-6882-01 4 106156734 106156734 C T TET2 Silent p.D545D 0.38 TCGA-EI-6882-01 4 106600991 106600991 C A ARHGEF38 3'UTR 0.26 TCGA-EI-6882-01 4 106861729 106861729 C T NPNT Silent p.N263N 0.36 TCGA-EI-6882-01 4 107845845 107845845 G A DKK2 Missense_Mutation p.P129L 0.42 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 4 108954337 108954337 G A HADH Missense_Mutation p.A256T 0.39 deleterious(0) probably_damaging(0.986) TCGA-EI-6882-01 4 111397877 111397877 G A ENPEP Missense_Mutation p.D103N 0.33 tolerated(0.11) benign(0.19) TCGA-EI-6882-01 4 119745869 119745869 C T SEC24D Missense_Mutation p.A52T 0.43 tolerated_low_confidence(0.1) benign(0.004) TCGA-EI-6882-01 4 1222038 1222038 G A CTBP1 Missense_Mutation p.R97W 0.49 deleterious(0.02) possibly_damaging(0.822) TCGA-EI-6882-01 4 123107254 123107254 G A KIAA1109 Missense_Mutation p.R141H 0.33 probably_damaging(0.996) TCGA-EI-6882-01 4 123167900 123167900 T G KIAA1109 Missense_Mutation p.S1749R 0.09 benign(0.059) TCGA-EI-6882-01 4 123747893 123747893 C T FGF2 5'UTR 0.29 TCGA-EI-6882-01 4 128865003 128865003 C T MFSD8 Missense_Mutation p.V115M 0.33 deleterious(0) probably_damaging(0.986) TCGA-EI-6882-01 4 134072315 134072315 G A PCDH10 Silent p.A340A 0.30 TCGA-EI-6882-01 4 134073005 134073005 C T PCDH10 Silent p.N570N 0.37 TCGA-EI-6882-01 4 13485808 13485808 G - RAB28 5'UTR 0.31 TCGA-EI-6882-01 4 139980217 139980217 C T ELF2 Missense_Mutation p.V556I 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-EI-6882-01 4 140651577 140651577 G A MAML3 Missense_Mutation p.A775V 0.43 benign(0.225) TCGA-EI-6882-01 4 141590886 141590886 G A TBC1D9 Missense_Mutation p.R447C 0.41 tolerated(0.06) probably_damaging(0.997) TCGA-EI-6882-01 4 151177386 151177386 G A DCLK2 Missense_Mutation p.R780H 0.23 deleterious_low_confidence(0) unknown(0) TCGA-EI-6882-01 4 155191075 155191075 A C DCHS2 Missense_Mutation p.V1730G 0.21 deleterious(0) possibly_damaging(0.791) TCGA-EI-6882-01 4 15629605 15629605 C T FBXL5 Missense_Mutation p.R315H 0.47 tolerated(0.05) benign(0.009) TCGA-EI-6882-01 4 164272030 164272030 G T NPY5R Missense_Mutation p.W202L 0.26 deleterious(0) probably_damaging(0.993) TCGA-EI-6882-01 4 166405663 166405663 G A CPE Missense_Mutation p.D294N 0.46 tolerated(0.47) benign(0.046) TCGA-EI-6882-01 4 166996130 166996130 T C TLL1 Silent p.H763H 0.27 TCGA-EI-6882-01 4 169340531 169340531 C T DDX60L Silent p.P844P 0.07 TCGA-EI-6882-01 4 169835099 169835099 C T PALLD Missense_Mutation p.R882W 0.10 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 4 174450334 174450334 C T HAND2 Missense_Mutation p.S36N 0.53 tolerated(0.39) benign(0.002) TCGA-EI-6882-01 4 177067181 177067181 T C WDR17 Missense_Mutation p.V546A 0.48 tolerated(0.08) benign(0.37) TCGA-EI-6882-01 4 183673180 183673180 C T TENM3 Missense_Mutation p.P1286L 0.34 deleterious(0.01) benign(0.04) TCGA-EI-6882-01 4 188925980 188925980 G A ZFP42 3'UTR 0.30 TCGA-EI-6882-01 4 24839792 24839792 G A CCDC149 Nonsense_Mutation p.R159* 0.15 TCGA-EI-6882-01 4 25162131 25162131 A - SEPSECS 5'Flank 0.39 TCGA-EI-6882-01 4 25419793 25419793 G A ANAPC4 Missense_Mutation p.R739H 0.34 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 4 2896426 2896426 G A ADD1 Missense_Mutation p.V237I 0.47 tolerated(1) benign(0.009) TCGA-EI-6882-01 4 2930188 2930190 AAG - ADD1 In_Frame_Del p.K752del 0.35 TCGA-EI-6882-01 4 2940945 2940945 G A NOP14 Missense_Mutation p.A815V 0.42 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 4 3371929 3371929 G A RGS12 Intron 0.39 TCGA-EI-6882-01 4 39871058 39871058 G A PDS5A Silent p.L821L 0.18 TCGA-EI-6882-01 4 53463780 53463780 G A USP46 3'UTR 0.38 TCGA-EI-6882-01 4 57829703 57829703 G A NOA1 Silent p.R670R 0.08 TCGA-EI-6882-01 4 62812656 62812656 T C LPHN3 Missense_Mutation p.L747P 0.41 deleterious(0) probably_damaging(0.987) TCGA-EI-6882-01 4 6303738 6303738 A G WFS1 Missense_Mutation p.Y739C 0.15 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 4 650063 650063 C T PDE6B Silent p.D363D 0.31 TCGA-EI-6882-01 4 69202893 69202893 C T YTHDC1 Silent p.E245E 0.36 TCGA-EI-6882-01 4 7043078 7043078 G A CCDC96 Missense_Mutation p.R530C 0.41 deleterious(0.02) possibly_damaging(0.781) TCGA-EI-6882-01 4 71068927 71068927 T - ODAM 3'UTR 0.23 TCGA-EI-6882-01 4 71628402 71628402 C T RUFY3 Silent p.G115G 0.24 TCGA-EI-6882-01 4 73186526 73186526 G A ADAMTS3 Missense_Mutation p.A336V 0.35 deleterious(0) possibly_damaging(0.905) TCGA-EI-6882-01 4 759927 759927 G A PCGF3 3'UTR 0.38 TCGA-EI-6882-01 4 7783115 7783115 C T AFAP1 Silent p.G590G 0.44 TCGA-EI-6882-01 4 83839392 83839392 G A THAP9 Missense_Mutation p.R676H 0.39 tolerated(0.54) benign(0) TCGA-EI-6882-01 4 8469997 8469997 G A TRMT44 Silent p.A617A 0.39 TCGA-EI-6882-01 4 8582727 8582727 G A GPR78 Silent p.A6A 0.10 TCGA-EI-6882-01 4 87692381 87692381 C T PTPN13 Missense_Mutation p.P1626S 0.31 tolerated(0.09) benign(0.037) TCGA-EI-6882-01 4 89052286 89052286 G A ABCG2 Missense_Mutation p.T153M 0.36 deleterious(0.04) benign(0.268) TCGA-EI-6882-01 4 91645097 91645097 G A CCSER1 Silent p.T655T 0.41 TCGA-EI-6882-01 4 945022 945022 C T TMEM175 Silent p.D106D 0.36 TCGA-EI-6882-01 4 9785349 9785349 G C DRD5 3'UTR 0.13 TCGA-EI-6882-01 5 101755689 101755689 A C SLCO6A1 Missense_Mutation p.L438R 0.09 deleterious(0) probably_damaging(0.995) TCGA-EI-6882-01 5 102612501 102612501 A - C5orf30 3'UTR 0.27 TCGA-EI-6882-01 5 112163630 112163630 C T APC Missense_Mutation p.T518M 0.38 probably_damaging(0.944) TCGA-EI-6882-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.39 TCGA-EI-6882-01 5 112175760 112175761 - T APC Frame_Shift_Ins p.A1492Cfs*22 0.26 TCGA-EI-6882-01 5 112222816 112222816 C T REEP5 Missense_Mutation p.R139H 0.34 deleterious(0.04) probably_damaging(0.957) TCGA-EI-6882-01 5 112337287 112337289 GAA - DCP2 In_Frame_Del p.R242del 0.36 TCGA-EI-6882-01 5 112403798 112403798 C A MCC Missense_Mutation p.A670S 0.42 deleterious(0.05) benign(0.041) TCGA-EI-6882-01 5 113822866 113822866 T C KCNN2 Silent p.A458A 0.09 TCGA-EI-6882-01 5 113831780 113831780 C T KCNN2 Silent p.Y547Y 0.39 TCGA-EI-6882-01 5 118451982 118451982 C T DMXL1 Nonsense_Mutation p.R232* 0.51 TCGA-EI-6882-01 5 121188228 121188228 C T FTMT Silent p.C190C 0.41 TCGA-EI-6882-01 5 133640121 133640121 C T CDKL3 Silent p.Q532Q 0.08 TCGA-EI-6882-01 5 133897983 133897983 C T JADE2 Nonsense_Mutation p.R260* 0.50 TCGA-EI-6882-01 5 13717533 13717533 C T DNAH5 Missense_Mutation p.R4199H 0.42 possibly_damaging(0.812) TCGA-EI-6882-01 5 137803132 137803132 C - EGR1 Frame_Shift_Del p.H334Tfs*198 0.34 TCGA-EI-6882-01 5 137803348 137803348 A G EGR1 Missense_Mutation p.K404E 0.36 deleterious(0) unknown(0) TCGA-EI-6882-01 5 138260271 138260271 G A CTNNA1 Missense_Mutation p.R540H 0.44 tolerated(0.13) benign(0.03) TCGA-EI-6882-01 5 13830730 13830730 G A DNAH5 Nonsense_Mutation p.R2013* 0.36 TCGA-EI-6882-01 5 138643867 138643867 C T MATR3 Missense_Mutation p.R255C 0.43 tolerated(0.1) probably_damaging(0.982) TCGA-EI-6882-01 5 138729930 138729930 T C PROB1 Missense_Mutation p.T281A 0.12 tolerated_low_confidence(0.13) benign(0.014) TCGA-EI-6882-01 5 140186856 140186856 C T PCDHA4 Silent p.N28N 0.39 TCGA-EI-6882-01 5 140188660 140188660 G A PCDHA4 Missense_Mutation p.E630K 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.779) TCGA-EI-6882-01 5 140209606 140209606 C T PCDHA6 Missense_Mutation p.R644C 0.48 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-EI-6882-01 5 140209657 140209657 G T PCDHA6 Missense_Mutation p.A661S 0.45 deleterious_low_confidence(0.04) possibly_damaging(0.536) TCGA-EI-6882-01 5 140221945 140221945 G A PCDHA8 Missense_Mutation p.V347I 0.29 tolerated_low_confidence(0.12) benign(0.001) TCGA-EI-6882-01 5 140231409 140231409 T - PCDHA9 Intron 0.09 TCGA-EI-6882-01 5 140250985 140250985 C T PCDHA11 Missense_Mutation p.T766M 0.35 deleterious_low_confidence(0.03) benign(0.097) TCGA-EI-6882-01 5 140256910 140256910 C T PCDHA12 Missense_Mutation p.A618V 0.47 tolerated_low_confidence(0.14) benign(0.071) TCGA-EI-6882-01 5 140263648 140263648 G A PCDHA13 Missense_Mutation p.A599T 0.45 deleterious_low_confidence(0) possibly_damaging(0.686) TCGA-EI-6882-01 5 140573548 140573548 G A PCDHB10 Missense_Mutation p.A475T 0.28 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-EI-6882-01 5 140594414 140594414 C T PCDHB13 Missense_Mutation p.A240V 0.28 deleterious_low_confidence(0.05) benign(0.028) TCGA-EI-6882-01 5 140595588 140595588 C T PCDHB13 Silent p.S631S 0.42 TCGA-EI-6882-01 5 140625850 140625850 C T PCDHB15 Missense_Mutation p.A235V 0.38 tolerated_low_confidence(0.35) benign(0) TCGA-EI-6882-01 5 140773181 140773181 C T PCDHGA8 Silent p.S267S 0.39 TCGA-EI-6882-01 5 140773307 140773307 T C PCDHGA8 Silent p.Y309Y 0.24 TCGA-EI-6882-01 5 140801939 140801939 A G PCDHGA11 Missense_Mutation p.Q382R 0.42 tolerated_low_confidence(0.1) benign(0.04) TCGA-EI-6882-01 5 140858065 140858065 G A PCDHGC3 Silent p.P794P 0.42 TCGA-EI-6882-01 5 140869520 140869520 A G PCDHGC5 Missense_Mutation p.N238S 0.12 deleterious(0) probably_damaging(0.989) TCGA-EI-6882-01 5 141242808 141242808 G T PCDH1 Missense_Mutation p.P1030T 0.13 tolerated(0.51) benign(0) TCGA-EI-6882-01 5 146773632 146773632 G - DPYSL3 Frame_Shift_Del p.P674Qfs*10 0.13 TCGA-EI-6882-01 5 149216000 149216000 G A PPARGC1B Missense_Mutation p.R661Q 0.42 tolerated(0.29) benign(0.16) TCGA-EI-6882-01 5 149226792 149226792 G T PPARGC1B Intron 0.30 TCGA-EI-6882-01 5 149375608 149375608 G A TIGD6 Missense_Mutation p.R102W 0.14 deleterious(0.01) probably_damaging(0.981) TCGA-EI-6882-01 5 149499618 149499618 G A PDGFRB Silent p.D885D 0.46 TCGA-EI-6882-01 5 150844159 150844159 C T SLC36A1 Missense_Mutation p.R107C 0.47 deleterious(0.02) benign(0.005) TCGA-EI-6882-01 5 151784061 151784061 G A NMUR2 Missense_Mutation p.T205M 0.29 tolerated(0.18) probably_damaging(0.965) TCGA-EI-6882-01 5 164028104 164028104 G A CTC-340A15.2 RNA 0.50 TCGA-EI-6882-01 5 169291327 169291327 A C FAM196B Missense_Mutation p.L520V 0.39 tolerated(0.08) benign(0.018) TCGA-EI-6882-01 5 169780917 169780917 G A KCNIP1 Missense_Mutation p.V13M 0.48 tolerated_low_confidence(0.27) benign(0.016) TCGA-EI-6882-01 5 175998258 175998258 C T CDHR2 Silent p.N120N 0.30 TCGA-EI-6882-01 5 176011453 176011453 C T CDHR2 Missense_Mutation p.T724M 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6882-01 5 176882792 176882792 C T PRR7 Silent p.P165P 0.34 TCGA-EI-6882-01 5 177031402 177031402 C - B4GALT7 Frame_Shift_Del p.H93Tfs*27 0.20 TCGA-EI-6882-01 5 178418873 178418873 T C GRM6 Missense_Mutation p.E239G 0.08 deleterious(0.01) possibly_damaging(0.593) TCGA-EI-6882-01 5 179036469 179036469 C T RUFY1 Silent p.C692C 0.36 TCGA-EI-6882-01 5 179297374 179297374 G C TBC1D9B Missense_Mutation p.A869G 0.23 tolerated(0.51) benign(0.003) TCGA-EI-6882-01 5 2748665 2748665 G A IRX2 Missense_Mutation p.S386L 0.10 deleterious(0) benign(0.048) TCGA-EI-6882-01 5 31322961 31322961 G A CDH6 Missense_Mutation p.R640Q 0.42 tolerated(0.06) probably_damaging(0.992) TCGA-EI-6882-01 5 32052798 32052798 G A PDZD2 Missense_Mutation p.V583I 0.34 tolerated(0.87) probably_damaging(0.996) TCGA-EI-6882-01 5 32355974 32355974 G A ZFR Silent p.S1039S 0.33 TCGA-EI-6882-01 5 33614391 33614391 A C ADAMTS12 Missense_Mutation p.F827V 0.13 tolerated(0.13) benign(0.272) TCGA-EI-6882-01 5 33892083 33892083 C T ADAMTS12 5'UTR 0.60 TCGA-EI-6882-01 5 34949743 34949743 C T DNAJC21 Silent p.S427S 0.45 TCGA-EI-6882-01 5 35955790 35955790 C T UGT3A1 Missense_Mutation p.D418N 0.35 deleterious(0.03) benign(0.22) TCGA-EI-6882-01 5 3600247 3600247 C T IRX1 Silent p.G395G 0.25 TCGA-EI-6882-01 5 41850260 41850260 G A OXCT1 Missense_Mutation p.R146C 0.33 deleterious(0.01) probably_damaging(1) TCGA-EI-6882-01 5 476782 476783 TC - SLC9A3 Frame_Shift_Del p.E589Kfs*138 0.33 TCGA-EI-6882-01 5 492131 492131 G A SLC9A3 Silent p.I89I 0.41 TCGA-EI-6882-01 5 52954446 52954446 A - NDUFS4 Frame_Shift_Del p.N141Mfs*48 0.25 TCGA-EI-6882-01 5 55204491 55204491 G A IL31RA Intron 0.25 TCGA-EI-6882-01 5 61876755 61876755 A - LRRC70 Frame_Shift_Del p.N499Tfs*17 0.28 TCGA-EI-6882-01 5 66448623 66448623 G A MAST4 Missense_Mutation p.G1152S 0.43 probably_damaging(1) TCGA-EI-6882-01 5 71482491 71482491 C T MAP1B Silent p.T140T 0.41 TCGA-EI-6882-01 5 76624834 76624834 C A PDE8B Missense_Mutation p.A201D 0.53 deleterious(0.01) probably_damaging(0.987) TCGA-EI-6882-01 5 76704772 76704772 G A PDE8B Missense_Mutation p.A474T 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-EI-6882-01 5 78985754 78985754 C T CMYA5 Silent p.H8H 0.37 TCGA-EI-6882-01 5 82834553 82834553 C T VCAN Nonsense_Mutation p.R1911* 0.26 TCGA-EI-6882-01 5 843818 843818 G T ZDHHC11 Silent p.A175A 0.28 TCGA-EI-6882-01 5 86659182 86659182 A G RASA1 Missense_Mutation p.K491E 0.48 deleterious(0.01) probably_damaging(0.982) TCGA-EI-6882-01 5 89918435 89918435 G A GPR98 Missense_Mutation p.E159K 0.42 possibly_damaging(0.874) TCGA-EI-6882-01 5 89953815 89953815 C T GPR98 Missense_Mutation p.T1491M 0.16 probably_damaging(0.981) TCGA-EI-6882-01 5 9054213 9054213 G A SEMA5A Missense_Mutation p.T892M 0.35 tolerated(0.23) probably_damaging(0.963) TCGA-EI-6882-01 5 9224812 9224812 G A SEMA5A Missense_Mutation p.A207V 0.50 tolerated(0.16) possibly_damaging(0.766) TCGA-EI-6882-01 5 94014653 94014653 G A ANKRD32 Silent p.S656S 0.34 TCGA-EI-6882-01 5 98192345 98192345 T G CHD1 Missense_Mutation p.K1624N 0.46 tolerated_low_confidence(0.13) benign(0) TCGA-EI-6882-01 5 98223893 98223893 G A CHD1 Missense_Mutation p.R799C 0.44 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 6 100395720 100395721 - C MCHR2 Frame_Shift_Ins p.P104Afs*13 0.23 TCGA-EI-6882-01 6 10557410 10557410 C - GCNT2 Intron 0.30 TCGA-EI-6882-01 6 10791921 10791922 - T MAK Frame_Shift_Ins p.D435Rfs*33 0.23 TCGA-EI-6882-01 6 107955296 107955296 G A SOBP Silent p.P416P 0.40 TCGA-EI-6882-01 6 109763976 109763976 C T SMPD2 Silent p.D171D 0.21 TCGA-EI-6882-01 6 109766409 109766409 G A MICAL1 Missense_Mutation p.R958C 0.22 deleterious(0.01) possibly_damaging(0.631) TCGA-EI-6882-01 6 11185682 11185682 G A NEDD9 Nonsense_Mutation p.R740* 0.38 TCGA-EI-6882-01 6 117083229 117083229 C T FAM162B Missense_Mutation p.A101T 0.21 deleterious(0) probably_damaging(0.989) TCGA-EI-6882-01 6 122773101 122773101 C T SERINC1 Missense_Mutation p.A231T 0.37 tolerated(0.07) benign(0.005) TCGA-EI-6882-01 6 123039059 123039059 C T PKIB Silent p.D47D 0.43 TCGA-EI-6882-01 6 131540874 131540874 G A AKAP7 Missense_Mutation p.R259H 0.40 deleterious(0) probably_damaging(0.931) TCGA-EI-6882-01 6 131919865 131919865 G A MED23 Missense_Mutation p.R753C 0.37 deleterious(0) probably_damaging(0.95) TCGA-EI-6882-01 6 132891851 132891851 T C TAAR6 Missense_Mutation p.Y131H 0.08 tolerated(0.17) possibly_damaging(0.633) TCGA-EI-6882-01 6 133004450 133004450 G A VNN1 Silent p.D457D 0.41 TCGA-EI-6882-01 6 13365772 13365772 G A GFOD1 Missense_Mutation p.P126S 0.16 deleterious(0) probably_damaging(0.993) TCGA-EI-6882-01 6 135518338 135518338 A - MYB Frame_Shift_Del p.K483Nfs*8 0.24 TCGA-EI-6882-01 6 136913319 136913319 A T MAP3K5 Missense_Mutation p.L1073I 0.44 tolerated(0.37) possibly_damaging(0.471) TCGA-EI-6882-01 6 13801575 13801575 T - MCUR1 Frame_Shift_Del p.K229Rfs*3 0.25 TCGA-EI-6882-01 6 138196093 138196093 G A TNFAIP3 Missense_Mutation p.R136H 0.31 tolerated(0.13) benign(0.027) TCGA-EI-6882-01 6 138754685 138754685 G A NHSL1 Missense_Mutation p.T270M 0.37 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 6 143823176 143823176 A - FUCA2 Frame_Shift_Del p.F349Lfs*5 0.23 TCGA-EI-6882-01 6 147124563 147124563 C T ADGB Intron 0.43 TCGA-EI-6882-01 6 149795403 149795403 C A ZC3H12D Missense_Mutation p.V93L 0.37 deleterious(0) probably_damaging(0.957) TCGA-EI-6882-01 6 151766446 151766446 G A RMND1 Silent p.N167N 0.43 TCGA-EI-6882-01 6 152201796 152201796 A G ESR1 Missense_Mutation p.N217S 0.39 deleterious(0.02) possibly_damaging(0.817) TCGA-EI-6882-01 6 152688434 152688434 C T SYNE1 Silent p.T3297T 0.47 TCGA-EI-6882-01 6 152716783 152716783 A G SYNE1 Missense_Mutation p.L2527P 0.37 possibly_damaging(0.883) TCGA-EI-6882-01 6 152738032 152738032 T C SYNE1 Missense_Mutation p.E1847G 0.35 benign(0.008) TCGA-EI-6882-01 6 152804233 152804233 A C SYNE1 Missense_Mutation p.L446R 0.46 benign(0.007) TCGA-EI-6882-01 6 155143467 155143467 G A SCAF8 Missense_Mutation p.S617N 0.11 tolerated(0.05) possibly_damaging(0.786) TCGA-EI-6882-01 6 155577988 155577988 G A TIAM2 Silent p.P1613P 0.33 TCGA-EI-6882-01 6 160908333 160908333 G A LPAL2 Intron 0.35 TCGA-EI-6882-01 6 161469776 161469776 A G MAP3K4 Missense_Mutation p.K158E 0.40 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 6 163510403 163510403 A C PACRG Missense_Mutation p.Q192H 0.33 deleterious(0) possibly_damaging(0.759) TCGA-EI-6882-01 6 168377461 168377461 C T RP3-470B24.5 RNA 0.39 TCGA-EI-6882-01 6 20102524 20102525 - T MBOAT1 Frame_Shift_Ins p.T494Nfs*22 0.28 TCGA-EI-6882-01 6 24566975 24566975 T A KIAA0319 Missense_Mutation p.E714D 0.65 deleterious(0.03) possibly_damaging(0.734) TCGA-EI-6882-01 6 24828407 24828407 C T FAM65B Missense_Mutation p.V896I 0.27 tolerated(0.16) benign(0.082) TCGA-EI-6882-01 6 26184091 26184093 AGA - HIST1H2BE In_Frame_Del p.K25del 0.44 TCGA-EI-6882-01 6 26385308 26385308 C T BTN2A2 Missense_Mutation p.R54C 0.36 tolerated(0.1) benign(0.081) TCGA-EI-6882-01 6 27841061 27841061 G A HIST1H4L Silent p.H76H 0.51 TCGA-EI-6882-01 6 28554460 28554460 G A SCAND3 Missense_Mutation p.A12V 0.44 deleterious_low_confidence(0) benign(0.001) TCGA-EI-6882-01 6 29141930 29141930 G A OR2J2 Missense_Mutation p.R173H 0.38 tolerated(0.63) benign(0.005) TCGA-EI-6882-01 6 29408488 29408488 C T OR10C1 Silent p.G232G 0.43 TCGA-EI-6882-01 6 29595300 29595300 G A GABBR1 Missense_Mutation p.P207L 0.56 deleterious(0.01) possibly_damaging(0.508) TCGA-EI-6882-01 6 29911956 29911956 G A HLA-A Missense_Mutation p.R226K 0.08 deleterious_low_confidence(0.02) benign(0.03) TCGA-EI-6882-01 6 29912284 29912284 T G HLA-A Silent p.S301S 0.13 TCGA-EI-6882-01 6 30547784 30547784 T C ABCF1 Splice_Site p.X188_splice 0.40 TCGA-EI-6882-01 6 30551454 30551454 G A ABCF1 Missense_Mutation p.G329S 0.38 deleterious(0.03) possibly_damaging(0.811) TCGA-EI-6882-01 6 30624769 30624769 C T DHX16 Missense_Mutation p.R703H 0.31 deleterious(0.01) unknown(0) TCGA-EI-6882-01 6 31382832 31382832 G A MICA 3'UTR 0.45 TCGA-EI-6882-01 6 31496788 31496788 C T MCCD1 5'UTR 0.36 TCGA-EI-6882-01 6 3154319 3154319 C T TUBB2A Silent p.T372T 0.42 TCGA-EI-6882-01 6 31603457 31603457 G A PRRC2A Silent p.E1824E 0.19 TCGA-EI-6882-01 6 31609940 31609940 G A BAG6 Missense_Mutation p.R732C 0.36 deleterious(0) possibly_damaging(0.53) TCGA-EI-6882-01 6 31829815 31829815 C A NEU1 Missense_Mutation p.G105W 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 6 31846750 31846750 C - SLC44A4 Frame_Shift_Del p.G3Efs*44 0.21 TCGA-EI-6882-01 6 31848508 31848508 G A EHMT2 Nonsense_Mutation p.R1132* 0.38 TCGA-EI-6882-01 6 31854830 31854830 G A EHMT2 Missense_Mutation p.T687M 0.43 deleterious(0.01) possibly_damaging(0.885) TCGA-EI-6882-01 6 31867698 31867698 C T ZBTB12 3'UTR 0.50 TCGA-EI-6882-01 6 31937797 31937797 C T DXO Missense_Mutation p.V350I 0.42 deleterious(0.04) benign(0.004) TCGA-EI-6882-01 6 31997467 31997467 C T C4B Silent p.Y1267Y 0.23 TCGA-EI-6882-01 6 32170147 32170147 C - NOTCH4 Frame_Shift_Del p.G1154Afs*150 0.27 TCGA-EI-6882-01 6 33136501 33136501 A G COL11A2 Silent p.D1210D 0.08 TCGA-EI-6882-01 6 33284470 33284470 A G ZBTB22 Missense_Mutation p.L75P 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 6 33365810 33365810 C - KIFC1 Frame_Shift_Del p.L8Yfs*4 0.28 TCGA-EI-6882-01 6 35108559 35108560 - G TCP11 Frame_Shift_Ins p.Q43Pfs*24 0.32 TCGA-EI-6882-01 6 35467908 35467908 G T TULP1 Missense_Mutation p.R449S 0.45 deleterious(0.01) probably_damaging(0.995) TCGA-EI-6882-01 6 36870099 36870099 C T C6orf89 Missense_Mutation p.R105C 0.37 tolerated(0.13) benign(0.033) TCGA-EI-6882-01 6 36979617 36979617 C T FGD2 Missense_Mutation p.R172C 0.14 tolerated(0.08) probably_damaging(1) TCGA-EI-6882-01 6 39869175 39869175 A G DAAM2 Missense_Mutation p.E970G 0.09 deleterious(0) probably_damaging(0.988) TCGA-EI-6882-01 6 40400043 40400043 G T LRFN2 Silent p.G270G 0.45 TCGA-EI-6882-01 6 41555185 41555186 - C FOXP4 Frame_Shift_Ins p.L272Pfs*44 0.39 TCGA-EI-6882-01 6 41557870 41557870 G A FOXP4 Missense_Mutation p.R440Q 0.33 deleterious(0) probably_damaging(0.991) TCGA-EI-6882-01 6 41751288 41751291 CAGA - PRICKLE4 Frame_Shift_Del p.D27Vfs*22 0.48 TCGA-EI-6882-01 6 41766263 41766263 C T USP49 3'UTR 0.39 TCGA-EI-6882-01 6 41773457 41773457 C T USP49 Missense_Mutation p.R422H 0.12 tolerated(0.54) benign(0.017) TCGA-EI-6882-01 6 42905914 42905914 C T CNPY3 Silent p.C194C 0.43 TCGA-EI-6882-01 6 43250776 43250776 G A TTBK1 Silent p.E766E 0.37 TCGA-EI-6882-01 6 43400422 43400422 G A ABCC10 Missense_Mutation p.R235H 0.30 tolerated(0.06) probably_damaging(0.912) TCGA-EI-6882-01 6 43608074 43608074 G A MAD2L1BP Missense_Mutation p.G242D 0.39 tolerated(0.08) probably_damaging(0.997) TCGA-EI-6882-01 6 44115224 44115224 G A TMEM63B Missense_Mutation p.R325Q 0.44 tolerated(0.63) benign(0.003) TCGA-EI-6882-01 6 44241147 44241147 G A TMEM151B Silent p.T160T 0.43 TCGA-EI-6882-01 6 44270564 44270564 G A AARS2 Missense_Mutation p.A780V 0.09 deleterious(0.02) benign(0.124) TCGA-EI-6882-01 6 47846657 47846657 G A PTCHD4 Silent p.I641I 0.38 TCGA-EI-6882-01 6 49582462 49582462 C T RHAG Missense_Mutation p.A249T 0.39 deleterious(0.01) possibly_damaging(0.736) TCGA-EI-6882-01 6 49936566 49936566 T - DEFB113 Frame_Shift_Del p.T25Qfs*? 0.22 TCGA-EI-6882-01 6 56484334 56484334 T C DST Intron 0.38 TCGA-EI-6882-01 6 6197539 6197539 T C F13A1 Missense_Mutation p.E378G 0.08 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 6 64421621 64421622 - A PHF3 Frame_Shift_Ins p.S1382Kfs*2 0.13 TCGA-EI-6882-01 6 65596688 65596688 A C EYS Missense_Mutation p.L965R 0.56 deleterious(0.05) probably_damaging(0.996) TCGA-EI-6882-01 6 70423652 70423652 C T LMBRD1 Missense_Mutation p.R267H 0.21 tolerated(0.11) benign(0.058) TCGA-EI-6882-01 6 71298366 71298366 G - C6orf57 Frame_Shift_Del p.G90Afs*25 0.09 TCGA-EI-6882-01 6 72806829 72806829 G A RIMS1 Silent p.A141A 0.36 TCGA-EI-6882-01 6 74104701 74104701 C T DDX43 Nonsense_Mutation p.R25* 0.47 TCGA-EI-6882-01 6 74161472 74161472 C T MB21D1 Missense_Mutation p.G145S 0.43 tolerated(0.27) benign(0.026) TCGA-EI-6882-01 6 7585515 7585515 G A DSP Missense_Mutation p.A2674T 0.13 probably_damaging(0.999) TCGA-EI-6882-01 6 7585771 7585771 G A DSP Missense_Mutation p.R2759H 0.57 probably_damaging(0.993) TCGA-EI-6882-01 6 75965966 75965966 C T TMEM30A Missense_Mutation p.S313N 0.26 deleterious(0) probably_damaging(0.962) TCGA-EI-6882-01 6 76532547 76532547 A - MYO6 Frame_Shift_Del p.D58Mfs*8 0.16 TCGA-EI-6882-01 6 78172304 78172304 G A HTR1B Missense_Mutation p.R273W 0.31 deleterious(0.03) probably_damaging(0.925) TCGA-EI-6882-01 6 80744798 80744798 G A TTK Missense_Mutation p.E571K 0.33 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 6 88239330 88239330 A T RARS2 Missense_Mutation p.S270T 0.27 deleterious(0.01) probably_damaging(0.96) TCGA-EI-6882-01 6 99285815 99285816 - T POU3F2 3'UTR 0.34 TCGA-EI-6882-01 7 100238755 100238755 C G TFR2 Missense_Mutation p.G44R 0.20 deleterious(0.01) benign(0.393) TCGA-EI-6882-01 7 100390155 100390155 G A ZAN Missense_Mutation p.R2613H 0.49 unknown(0) TCGA-EI-6882-01 7 101839973 101839973 G C CUX1 Missense_Mutation p.A439P 0.28 tolerated(0.14) unknown(0) TCGA-EI-6882-01 7 101921253 101921253 C A CUX1 Missense_Mutation p.L531M 0.45 deleterious(0) possibly_damaging(0.492) TCGA-EI-6882-01 7 102105608 102105609 - T LRWD1 Splice_Site p.X27_splice 0.37 TCGA-EI-6882-01 7 102401749 102401749 T A FAM185A Missense_Mutation p.S228R 0.13 deleterious(0) benign(0.206) TCGA-EI-6882-01 7 102453823 102453823 T - FBXL13 Frame_Shift_Del p.K725Sfs*39 0.13 TCGA-EI-6882-01 7 106508470 106508470 C T PIK3CG Missense_Mutation p.T155M 0.29 deleterious(0.02) possibly_damaging(0.677) TCGA-EI-6882-01 7 11022529 11022529 C T PHF14 Nonsense_Mutation p.R215* 0.38 TCGA-EI-6882-01 7 110763618 110763618 T - LRRN3 Frame_Shift_Del p.L265Wfs*3 0.14 TCGA-EI-6882-01 7 116963028 116963028 C T WNT2 Missense_Mutation p.G6S 0.56 tolerated(0.94) unknown(0) TCGA-EI-6882-01 7 120907346 120907346 T C CPED1 Missense_Mutation p.F904S 0.18 tolerated(0.14) benign(0.039) TCGA-EI-6882-01 7 121651577 121651577 C T PTPRZ1 Missense_Mutation p.S826F 0.39 deleterious_low_confidence(0) benign(0.016) TCGA-EI-6882-01 7 121758495 121758495 C T AASS Missense_Mutation p.A185T 0.13 tolerated(0.08) benign(0.391) TCGA-EI-6882-01 7 121758673 121758673 T C AASS Missense_Mutation p.I162V 0.41 deleterious(0.01) benign(0.081) TCGA-EI-6882-01 7 12400863 12400863 A G VWDE Silent p.G1023G 0.12 TCGA-EI-6882-01 7 126410096 126410096 A G GRM8 Missense_Mutation p.S394P 0.25 deleterious(0.02) possibly_damaging(0.892) TCGA-EI-6882-01 7 128312527 128312529 CTT - FAM71F2 In_Frame_Del p.L27del 0.38 TCGA-EI-6882-01 7 128489575 128489575 C T FLNC Silent p.Y1714Y 0.39 TCGA-EI-6882-01 7 129096478 129096478 C T STRIP2 Nonsense_Mutation p.R345* 0.41 TCGA-EI-6882-01 7 129917687 129917687 C T CPA2 Missense_Mutation p.R240W 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6882-01 7 129986348 129986348 G A CPA5 Missense_Mutation p.G8R 0.31 tolerated_low_confidence(0.06) unknown(0) TCGA-EI-6882-01 7 134134527 134134527 A G AKR1B1 Missense_Mutation p.L125S 0.24 tolerated(0.43) benign(0.319) TCGA-EI-6882-01 7 134849521 134849522 GA - TMEM140 Frame_Shift_Del p.R111Sfs*65 0.30 TCGA-EI-6882-01 7 135304230 135304230 A G NUP205 Silent p.T1341T 0.35 TCGA-EI-6882-01 7 138429965 138429965 A G ATP6V0A4 Missense_Mutation p.Y461H 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 7 139102304 139102304 G A LUC7L2 Missense_Mutation p.R343H 0.26 deleterious(0.01) unknown(0) TCGA-EI-6882-01 7 140501210 140501210 A G BRAF Splice_Site p.X287_splice 0.37 TCGA-EI-6882-01 7 141419010 141419010 C T WEE2 Missense_Mutation p.R242C 0.27 deleterious(0.04) possibly_damaging(0.458) TCGA-EI-6882-01 7 142562178 142562178 G A EPHB6 Missense_Mutation p.R207H 0.49 deleterious(0.04) benign(0.087) TCGA-EI-6882-01 7 143097110 143097110 G A EPHA1 Nonsense_Mutation p.R157* 0.33 TCGA-EI-6882-01 7 148454123 148454123 C T CUL1 Nonsense_Mutation p.Q122* 0.34 TCGA-EI-6882-01 7 149485558 149485558 G A SSPO Intron 0.31 TCGA-EI-6882-01 7 149511938 149511938 G A SSPO RNA 0.35 TCGA-EI-6882-01 7 149576436 149576436 C T ATP6V0E2 Silent p.L104L 0.52 TCGA-EI-6882-01 7 150648074 150648074 G A KCNH2 Missense_Mutation p.R694C 0.42 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 7 150768548 150768548 G - SLC4A2 Frame_Shift_Del p.L685* 0.20 TCGA-EI-6882-01 7 150814205 150814205 C T AGAP3 Silent p.S138S 0.36 TCGA-EI-6882-01 7 150817104 150817104 G A AGAP3 Missense_Mutation p.D334N 0.38 tolerated(0.17) possibly_damaging(0.509) TCGA-EI-6882-01 7 150839057 150839057 C T AGAP3 Missense_Mutation p.A626V 0.44 tolerated(0.5) benign(0.371) TCGA-EI-6882-01 7 150845977 150845977 C T GBX1 Missense_Mutation p.R264H 0.29 deleterious(0.02) probably_damaging(1) TCGA-EI-6882-01 7 150934900 150934900 T C CHPF2 Silent p.T484T 0.30 TCGA-EI-6882-01 7 155537755 155537755 A G RBM33 Missense_Mutation p.Q813R 0.11 deleterious(0) unknown(0) TCGA-EI-6882-01 7 156469082 156469082 G A RNF32 Intron 0.30 TCGA-EI-6882-01 7 15725889 15725889 A G MEOX2 Missense_Mutation p.S47P 0.28 tolerated(0.22) benign(0.001) TCGA-EI-6882-01 7 158534236 158534236 G A ESYT2 Nonsense_Mutation p.Q743* 0.35 TCGA-EI-6882-01 7 158824694 158824694 C T VIPR2 Missense_Mutation p.V346M 0.46 deleterious(0.03) possibly_damaging(0.808) TCGA-EI-6882-01 7 158851255 158851255 A C VIPR2 Missense_Mutation p.I124M 0.23 tolerated(0.36) possibly_damaging(0.78) TCGA-EI-6882-01 7 20739697 20739697 G T ABCB5 Missense_Mutation p.R759I 0.33 tolerated(0.13) benign(0.037) TCGA-EI-6882-01 7 2296590 2296590 C T SNX8 Silent p.T401T 0.40 TCGA-EI-6882-01 7 2649727 2649727 C T IQCE Silent p.D673D 0.37 TCGA-EI-6882-01 7 27141769 27141771 GGC - HOXA2 In_Frame_Del p.A117del 0.36 TCGA-EI-6882-01 7 27141771 27141771 C T HOXA2 Missense_Mutation p.A117T 0.21 tolerated(0.13) benign(0.004) TCGA-EI-6882-01 7 27141774 27141774 C T HOXA2 Missense_Mutation p.A116T 0.25 tolerated(0.53) benign(0.013) TCGA-EI-6882-01 7 27147397 27147397 G A HOXA3 3'UTR 0.33 TCGA-EI-6882-01 7 27185283 27185283 G A HOXA6 Silent p.G232G 0.42 TCGA-EI-6882-01 7 2966400 2966400 C T CARD11 Missense_Mutation p.G594S 0.17 tolerated(0.42) benign(0.001) TCGA-EI-6882-01 7 30868313 30868313 G A FAM188B Silent p.P364P 0.34 TCGA-EI-6882-01 7 40220578 40220578 A C SUGCT Missense_Mutation p.K52Q 0.41 deleterious(0) possibly_damaging(0.662) TCGA-EI-6882-01 7 42003846 42003846 A - GLI3 3'UTR 0.12 TCGA-EI-6882-01 7 42005279 42005279 G A GLI3 Missense_Mutation p.A1131V 0.43 tolerated(0.49) benign(0.023) TCGA-EI-6882-01 7 43906548 43906548 C T MRPS24 Missense_Mutation p.R85Q 0.50 tolerated(0.07) possibly_damaging(0.563) TCGA-EI-6882-01 7 44571810 44571810 G A NPC1L1 Missense_Mutation p.R806W 0.29 deleterious(0) probably_damaging(0.995) TCGA-EI-6882-01 7 44746937 44746937 C T OGDH Missense_Mutation p.R916C 0.30 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 7 45010561 45010561 G A MYO1G Missense_Mutation p.T315M 0.31 tolerated(0.05) probably_damaging(1) TCGA-EI-6882-01 7 47869078 47869078 C T PKD1L1 Missense_Mutation p.R2227H 0.38 tolerated(0.94) benign(0) TCGA-EI-6882-01 7 48494753 48494753 G A ABCA13 Missense_Mutation p.D4229N 0.29 benign(0.016) TCGA-EI-6882-01 7 5103370 5103370 G A RBAK-RBAKDN Intron 0.42 TCGA-EI-6882-01 7 57528490 57528490 A - ZNF716 Frame_Shift_Del p.V110* 0.16 TCGA-EI-6882-01 7 5792596 5792596 G A RNF216 Nonsense_Mutation p.R28* 0.31 TCGA-EI-6882-01 7 6006679 6006680 AG - RSPH10B Frame_Shift_Del p.S23* 0.34 TCGA-EI-6882-01 7 6370157 6370157 C T FAM220A Missense_Mutation p.R210H 0.36 tolerated(0.57) benign(0.361) TCGA-EI-6882-01 7 64378650 64378650 C T ZNF273 Missense_Mutation p.A102V 0.33 deleterious(0.02) benign(0.048) TCGA-EI-6882-01 7 65441106 65441106 C T GUSB Missense_Mutation p.V270M 0.14 deleterious(0.02) benign(0.095) TCGA-EI-6882-01 7 65548114 65548114 G A ASL Silent p.S133S 0.20 TCGA-EI-6882-01 7 70231291 70231291 G A AUTS2 Missense_Mutation p.A554T 0.39 tolerated(0.14) benign(0.281) TCGA-EI-6882-01 7 72398962 72398962 G A POM121 Silent p.E89E 0.38 TCGA-EI-6882-01 7 72892508 72892508 A G BAZ1B Missense_Mutation p.L428P 0.10 tolerated(0.28) benign(0.003) TCGA-EI-6882-01 7 75044238 75044238 C T POM121C 3'Flank 0.27 TCGA-EI-6882-01 7 87005030 87005030 C T CROT Nonsense_Mutation p.R275* 0.32 TCGA-EI-6882-01 7 927056 927056 C T GET4 Silent p.R122R 0.35 TCGA-EI-6882-01 7 93519550 93519550 T C TFPI2 Missense_Mutation p.Y57C 0.28 deleterious(0.02) possibly_damaging(0.611) TCGA-EI-6882-01 7 98546281 98546281 C T TRRAP Silent p.N1580N 0.32 TCGA-EI-6882-01 7 98563456 98563456 C T TRRAP Missense_Mutation p.R2365W 0.36 possibly_damaging(0.836) TCGA-EI-6882-01 7 98565130 98565130 G A TRRAP Missense_Mutation p.E2434K 0.48 benign(0.067) TCGA-EI-6882-01 7 99032570 99032570 C T ATP5J2-PTCD1 Missense_Mutation p.R148Q 0.46 deleterious(0) probably_damaging(0.997) TCGA-EI-6882-01 7 99797220 99797220 C G STAG3 Missense_Mutation p.Q544E 0.48 tolerated(0.16) possibly_damaging(0.907) TCGA-EI-6882-01 8 100050671 100050671 T - VPS13B Frame_Shift_Del p.L58* 0.10 TCGA-EI-6882-01 8 100712090 100712090 A G VPS13B Silent p.K2153K 0.43 TCGA-EI-6882-01 8 104153174 104153174 G A BAALC Missense_Mutation p.E17K 0.49 deleterious(0.01) possibly_damaging(0.737) TCGA-EI-6882-01 8 105260948 105260948 C T RIMS2 Missense_Mutation p.R1166C 0.37 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EI-6882-01 8 105261005 105261005 C T RIMS2 Silent p.L1185L 0.35 TCGA-EI-6882-01 8 105361097 105361097 T C DCSTAMP Missense_Mutation p.V106A 0.36 tolerated(0.09) benign(0.144) TCGA-EI-6882-01 8 105509430 105509430 A T LRP12 Missense_Mutation p.F450L 0.07 tolerated(0.59) possibly_damaging(0.779) TCGA-EI-6882-01 8 107782209 107782209 A C ABRA Silent p.T70T 0.30 TCGA-EI-6882-01 8 119593040 119593040 G A SAMD12 Nonsense_Mutation p.Q36* 0.18 TCGA-EI-6882-01 8 120602772 120602772 G A ENPP2 Nonsense_Mutation p.R446* 0.40 TCGA-EI-6882-01 8 120744062 120744062 C T TAF2 3'UTR 0.17 TCGA-EI-6882-01 8 128752729 128752731 CTT - MYC In_Frame_Del p.S298del 0.35 TCGA-EI-6882-01 8 12883435 12883435 A G KIAA1456 3'UTR 0.37 TCGA-EI-6882-01 8 133076083 133076083 A - OC90 5'Flank 0.28 TCGA-EI-6882-01 8 135612899 135612900 - A ZFAT Frame_Shift_Ins p.W752Lfs*7 0.28 TCGA-EI-6882-01 8 141889660 141889660 C T PTK2 Missense_Mutation p.R91Q 0.10 tolerated(0.72) benign(0) TCGA-EI-6882-01 8 142166014 142166014 G A DENND3 Missense_Mutation p.D301N 0.62 tolerated(0.29) benign(0.002) TCGA-EI-6882-01 8 142231733 142231733 C T SLC45A4 Missense_Mutation p.A74T 0.42 tolerated(0.13) benign(0.015) TCGA-EI-6882-01 8 143623692 143623692 G A BAI1 Missense_Mutation p.S1366N 0.43 tolerated(1) benign(0.213) TCGA-EI-6882-01 8 145559851 145559851 C - SCRT1 5'UTR 0.28 TCGA-EI-6882-01 8 145618375 145618375 C T ADCK5 3'UTR 0.42 TCGA-EI-6882-01 8 145624384 145624384 G A CPSF1 Silent p.S504S 0.45 TCGA-EI-6882-01 8 145665774 145665774 G A TONSL Missense_Mutation p.A417V 0.29 deleterious(0) probably_damaging(0.998) TCGA-EI-6882-01 8 145948256 145948256 T G ZNF251 Missense_Mutation p.K263N 0.17 deleterious(0) possibly_damaging(0.461) TCGA-EI-6882-01 8 15517065 15517065 G A TUSC3 Missense_Mutation p.R159K 0.35 tolerated(1) benign(0.001) TCGA-EI-6882-01 8 17102567 17102567 C T CNOT7 Missense_Mutation p.R32Q 0.33 tolerated(0.46) benign(0) TCGA-EI-6882-01 8 18432749 18432749 T - PSD3 Frame_Shift_Del p.N843Tfs*3 0.18 TCGA-EI-6882-01 8 22447195 22447195 C - PDLIM2 Frame_Shift_Del p.R487Dfs*29 0.30 TCGA-EI-6882-01 8 22449151 22449151 A C PDLIM2 Missense_Mutation p.H534P 0.36 tolerated(0.65) benign(0.122) TCGA-EI-6882-01 8 22865540 22865540 C T RHOBTB2 Silent p.S534S 0.33 TCGA-EI-6882-01 8 25191672 25191672 A G DOCK5 Missense_Mutation p.T718A 0.32 tolerated(0.76) possibly_damaging(0.872) TCGA-EI-6882-01 8 27155990 27155990 C T TRIM35 Silent p.K174K 0.47 TCGA-EI-6882-01 8 28210809 28210809 G - ZNF395 Frame_Shift_Del p.H234Tfs*43 0.29 TCGA-EI-6882-01 8 28608308 28608308 G A EXTL3 Silent p.T895T 0.25 TCGA-EI-6882-01 8 28974462 28974462 C T KIF13B Silent p.T1241T 0.25 TCGA-EI-6882-01 8 3205575 3205575 G A CSMD1 Missense_Mutation p.A1138V 0.42 benign(0.22) TCGA-EI-6882-01 8 3226867 3226867 C T CSMD1 Silent p.G936G 0.14 TCGA-EI-6882-01 8 3245146 3245146 G A CSMD1 Silent p.R884R 0.45 TCGA-EI-6882-01 8 33246773 33246773 C T FUT10 Missense_Mutation p.G307E 0.41 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 8 37611677 37611678 - T ERLIN2 3'UTR 0.25 TCGA-EI-6882-01 8 37823980 37823980 G A ADRB3 Missense_Mutation p.P3L 0.25 deleterious_low_confidence(0) benign(0.027) TCGA-EI-6882-01 8 38099801 38099801 T G DDHD2 Missense_Mutation p.L249R 0.44 deleterious(0) possibly_damaging(0.881) TCGA-EI-6882-01 8 39468229 39468229 A G ADAM18 Intron 0.37 TCGA-EI-6882-01 8 39606869 39606869 C T ADAM2 Missense_Mutation p.G659D 0.38 deleterious(0) possibly_damaging(0.801) TCGA-EI-6882-01 8 41553986 41553986 C T ANK1 Missense_Mutation p.R993H 0.48 deleterious(0) probably_damaging(0.975) TCGA-EI-6882-01 8 42785284 42785284 T A HOOK3 Missense_Mutation p.I79N 0.11 deleterious(0) possibly_damaging(0.812) TCGA-EI-6882-01 8 48801172 48801172 G A PRKDC Silent p.D1439D 0.41 TCGA-EI-6882-01 8 49641698 49641698 T C EFCAB1 Missense_Mutation p.D160G 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 8 52361597 52361597 C T PXDNL Missense_Mutation p.G444D 0.37 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 8 53569809 53569809 T C RB1CC1 Silent p.K860K 0.38 TCGA-EI-6882-01 8 53852578 53852578 G A NPBWR1 Silent p.A37A 0.39 TCGA-EI-6882-01 8 57026217 57026217 C T MOS Missense_Mutation p.V109I 0.40 tolerated(0.31) benign(0.02) TCGA-EI-6882-01 8 59058996 59058996 C T FAM110B Silent p.N69N 0.35 TCGA-EI-6882-01 8 59061288 59061288 A T FAM110B 3'UTR 0.44 TCGA-EI-6882-01 8 623338 623338 G A ERICH1 Silent p.H338H 0.37 TCGA-EI-6882-01 8 67067898 67067898 T G TRIM55 Intron 0.09 TCGA-EI-6882-01 8 67577817 67577817 T - VCPIP1 Frame_Shift_Del p.A460Qfs*2 0.17 TCGA-EI-6882-01 8 67958086 67958086 C T COPS5 Missense_Mutation p.R294Q 0.35 tolerated(0.16) benign(0.007) TCGA-EI-6882-01 8 68030510 68030510 A T CSPP1 Silent p.L503L 0.18 TCGA-EI-6882-01 8 68123819 68123819 T C ARFGEF1 Missense_Mutation p.H1573R 0.36 tolerated(0.34) benign(0.001) TCGA-EI-6882-01 8 68956724 68956724 G A PREX2 Missense_Mutation p.R281Q 0.37 tolerated(0.1) probably_damaging(0.978) TCGA-EI-6882-01 8 68972919 68972919 T A PREX2 Missense_Mutation p.F415Y 0.48 deleterious(0) possibly_damaging(0.671) TCGA-EI-6882-01 8 69621279 69621279 T G C8orf34 Missense_Mutation p.L431R 0.20 tolerated(0.4) benign(0.037) TCGA-EI-6882-01 8 70515440 70515440 G A SULF1 Missense_Mutation p.V359I 0.42 tolerated(0.08) probably_damaging(0.954) TCGA-EI-6882-01 8 82392691 82392691 G A FABP4 Silent p.D72D 0.31 TCGA-EI-6882-01 8 86389499 86389499 G A CA2 Missense_Mutation p.E220K 0.37 tolerated(0.23) possibly_damaging(0.464) TCGA-EI-6882-01 8 92090611 92090611 C T OTUD6B Nonsense_Mutation p.R145* 0.39 TCGA-EI-6882-01 8 97156826 97156826 C T GDF6 Missense_Mutation p.E445K 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 8 98725950 98725950 A - MTDH Frame_Shift_Del p.K447Rfs*19 0.30 TCGA-EI-6882-01 8 99170127 99170127 T C POP1 Silent p.S901S 0.30 TCGA-EI-6882-01 9 101804361 101804361 C T COL15A1 Missense_Mutation p.P849L 0.37 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 9 103054967 103054967 C T INVS Missense_Mutation p.R810C 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-EI-6882-01 9 103338808 103338808 A - TMEFF1 Frame_Shift_Del p.N358Tfs*11 0.22 TCGA-EI-6882-01 9 107298552 107298552 G A OR13C3 Silent p.S181S 0.52 TCGA-EI-6882-01 9 109691037 109691037 T C ZNF462 Missense_Mutation p.L1615P 0.43 possibly_damaging(0.456) TCGA-EI-6882-01 9 114886554 114886554 C T SUSD1 Missense_Mutation p.S290N 0.30 tolerated(0.21) possibly_damaging(0.88) TCGA-EI-6882-01 9 116028565 116028565 A G SLC31A1 3'Flank 0.31 TCGA-EI-6882-01 9 116812368 116812368 C T ZNF618 Missense_Mutation p.A836V 0.32 tolerated(0.1) benign(0.013) TCGA-EI-6882-01 9 117390477 117390477 G A C9orf91 Missense_Mutation p.A141T 0.44 tolerated(0.07) probably_damaging(0.932) TCGA-EI-6882-01 9 119093557 119093557 G A PAPPA Missense_Mutation p.G1061D 0.36 tolerated(0.53) probably_damaging(0.931) TCGA-EI-6882-01 9 123169340 123169340 G T CDK5RAP2 Missense_Mutation p.A1638D 0.25 tolerated(0.11) benign(0.027) TCGA-EI-6882-01 9 126143667 126143667 C T DENND1A 3'UTR 0.45 TCGA-EI-6882-01 9 126146169 126146169 C A DENND1A Missense_Mutation p.R534M 0.36 deleterious(0.02) possibly_damaging(0.466) TCGA-EI-6882-01 9 127998982 127998982 A G HSPA5 Silent p.A618A 0.26 TCGA-EI-6882-01 9 130169683 130169683 G A SLC2A8 3'UTR 0.33 TCGA-EI-6882-01 9 130577947 130577947 G A ENG 3'UTR 0.24 TCGA-EI-6882-01 9 131597853 131597853 G A CCBL1 Missense_Mutation p.R317C 0.43 deleterious(0.02) probably_damaging(0.994) TCGA-EI-6882-01 9 131771591 131771591 C T SH3GLB2 Missense_Mutation p.A292T 0.47 tolerated(0.75) benign(0.005) TCGA-EI-6882-01 9 131832581 131832581 C T FAM73B Missense_Mutation p.T544M 0.35 deleterious(0) probably_damaging(0.984) TCGA-EI-6882-01 9 134072641 134072641 G A NUP214 Missense_Mutation p.A1254T 0.35 benign(0.057) TCGA-EI-6882-01 9 134145839 134145839 C T FAM78A Intron 0.27 TCGA-EI-6882-01 9 135073913 135073913 C T NTNG2 Silent p.R258R 0.08 TCGA-EI-6882-01 9 135780988 135780988 C T TSC1 Silent p.A659A 0.34 TCGA-EI-6882-01 9 135942255 135942255 C T CEL Missense_Mutation p.R237W 0.24 deleterious(0) probably_damaging(0.939) TCGA-EI-6882-01 9 135973932 135973932 A G RALGDS 3'UTR 0.41 TCGA-EI-6882-01 9 136251422 136251422 C T C9orf96 Missense_Mutation p.R81W 0.32 deleterious(0) probably_damaging(0.932) TCGA-EI-6882-01 9 136320525 136320525 G A ADAMTS13 Missense_Mutation p.R1123H 0.22 deleterious(0) probably_damaging(0.967) TCGA-EI-6882-01 9 138395543 138395543 C T MRPS2 Missense_Mutation p.S152L 0.37 tolerated(0.42) benign(0.041) TCGA-EI-6882-01 9 139350126 139350126 G A SEC16A Silent p.I1928I 0.32 TCGA-EI-6882-01 9 139571522 139571522 G T AGPAT2 Missense_Mutation p.P128H 0.14 deleterious(0.02) probably_damaging(0.976) TCGA-EI-6882-01 9 139732025 139732025 C T RABL6 Missense_Mutation p.A347V 0.45 tolerated(0.36) benign(0.004) TCGA-EI-6882-01 9 139911079 139911080 - G ABCA2 Frame_Shift_Ins p.R957Pfs*19 0.35 TCGA-EI-6882-01 9 139915446 139915446 G A ABCA2 Missense_Mutation p.A322V 0.10 tolerated_low_confidence(0.07) benign(0.033) TCGA-EI-6882-01 9 139943183 139943183 C T ENTPD2 Missense_Mutation p.A472T 0.48 tolerated(0.32) benign(0.007) TCGA-EI-6882-01 9 140354910 140354910 G A PNPLA7 Missense_Mutation p.R1322W 0.25 deleterious_low_confidence(0.02) benign(0.001) TCGA-EI-6882-01 9 140657260 140657260 C T EHMT1 Silent p.S545S 0.20 TCGA-EI-6882-01 9 140728827 140728827 G A EHMT1 Silent p.A1189A 0.35 TCGA-EI-6882-01 9 140772574 140772574 G A CACNA1B Silent p.P63P 0.10 TCGA-EI-6882-01 9 33384952 33384952 G A AQP7 3'UTR 0.42 TCGA-EI-6882-01 9 33464082 33464082 G - NOL6 Frame_Shift_Del p.Q953Kfs*32 0.23 TCGA-EI-6882-01 9 33675728 33675728 G A PTENP1 RNA 0.05 TCGA-EI-6882-01 9 34371039 34371039 G A KIAA1161 Missense_Mutation p.R601C 0.46 deleterious(0) probably_damaging(1) TCGA-EI-6882-01 9 35105278 35105278 G T FAM214B Silent p.P519P 0.33 TCGA-EI-6882-01 9 35716492 35716492 G A TLN1 Silent p.I840I 0.23 TCGA-EI-6882-01 9 36170793 36170793 C A CCIN Silent p.R432R 0.36 TCGA-EI-6882-01 9 37020768 37020768 A C PAX5 Missense_Mutation p.V26G 0.40 deleterious(0) probably_damaging(0.975) TCGA-EI-6882-01 9 37746450 37746450 G A FRMPD1 Missense_Mutation p.R1474Q 0.14 tolerated(1) benign(0) TCGA-EI-6882-01 9 37746564 37746564 G A FRMPD1 Missense_Mutation p.R1512H 0.37 tolerated(0.08) benign(0.026) TCGA-EI-6882-01 9 39171532 39171532 C A CNTNAP3 Missense_Mutation p.E389D 0.30 tolerated(0.53) benign(0.009) TCGA-EI-6882-01 9 4118771 4118771 G A GLIS3 Missense_Mutation p.S236L 0.24 tolerated(0.07) benign(0.004) TCGA-EI-6882-01 9 66553785 66553785 C T RP11-262H14.4 RNA 0.12 TCGA-EI-6882-01 9 7013989 7013989 C T KDM4C Missense_Mutation p.R724W 0.54 deleterious(0.02) possibly_damaging(0.906) TCGA-EI-6882-01 9 71396226 71396226 T - FAM122A 3'UTR 0.11 TCGA-EI-6882-01 9 71628409 71628409 G A PRKACG Silent p.C200C 0.40 TCGA-EI-6882-01 9 72967275 72967275 T - SMC5 3'UTR 0.31 TCGA-EI-6882-01 9 77436724 77436724 G T TRPM6 Missense_Mutation p.L291M 0.25 deleterious(0.01) probably_damaging(0.98) TCGA-EI-6882-01 9 79997362 79997362 T - VPS13A Intron 0.24 TCGA-EI-6882-01 9 82227576 82227576 G T TLE4 Missense_Mutation p.E86D 0.40 deleterious(0.01) benign(0.162) TCGA-EI-6882-01 9 84607495 84607495 C T SPATA31D1 Missense_Mutation p.R704C 0.32 tolerated(0.31) possibly_damaging(0.81) TCGA-EI-6882-01 9 84607575 84607575 A T SPATA31D1 Silent p.G730G 0.22 TCGA-EI-6882-01 9 84607578 84607578 G A SPATA31D1 Silent p.P731P 0.24 TCGA-EI-6882-01 9 87570353 87570353 G T NTRK2 Missense_Mutation p.C698F 0.13 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 9 91609148 91609148 C - C9orf47 3'UTR 0.32 TCGA-EI-6882-01 9 96439936 96439936 G A PHF2 Missense_Mutation p.R1090Q 0.27 deleterious(0) benign(0.238) TCGA-EI-6882-01 9 97333808 97333808 T C FBP2 Missense_Mutation p.Y168C 0.31 deleterious(0) probably_damaging(0.991) TCGA-EI-6882-01 9 98231368 98231368 A G PTCH1 Missense_Mutation p.Y639H 0.38 tolerated(0.42) benign(0.004) TCGA-EI-6882-01 9 98766980 98766980 G A ERCC6L2 Missense_Mutation p.R196H 0.25 deleterious(0.01) probably_damaging(0.915) TCGA-EI-6882-01 9 99099002 99099002 A - SLC35D2 Frame_Shift_Del p.L250Wfs*5 0.32 TCGA-EI-6882-01 9 99694548 99694548 C T NUTM2G Silent p.S187S 0.22 TCGA-EI-6882-01 X 10098056 10098056 G A WWC3 Silent p.P831P 0.46 TCGA-EI-6882-01 X 10181921 10181921 C T CLCN4 Missense_Mutation p.R593C 0.79 deleterious(0.01) possibly_damaging(0.513) TCGA-EI-6882-01 X 109696982 109696982 G A RGAG1 Missense_Mutation p.R1046K 0.80 tolerated(0.22) benign(0.027) TCGA-EI-6882-01 X 110980017 110980017 G A ALG13 Missense_Mutation p.A869T 0.21 tolerated(0.12) benign(0.005) TCGA-EI-6882-01 X 115305553 115305554 - A AGTR2 3'UTR 0.43 TCGA-EI-6882-01 X 117960872 117960873 - T ZCCHC12 3'UTR 0.42 TCGA-EI-6882-01 X 118222520 118222520 G A KIAA1210 Silent p.V891V 0.76 TCGA-EI-6882-01 X 118771048 118771048 G A SEPT6 Missense_Mutation p.R300C 0.17 tolerated(0.13) probably_damaging(0.999) TCGA-EI-6882-01 X 119512629 119512629 G A ATP1B4 Splice_Site p.X304_splice 0.13 TCGA-EI-6882-01 X 123699318 123699318 G A TENM1 Missense_Mutation p.R724C 0.74 deleterious(0) probably_damaging(0.982) TCGA-EI-6882-01 X 125299513 125299513 C T DCAF12L2 Missense_Mutation p.R132H 0.61 tolerated(0.27) benign(0.028) TCGA-EI-6882-01 X 125685756 125685756 G A DCAF12L1 Missense_Mutation p.A279V 0.67 tolerated(0.05) possibly_damaging(0.842) TCGA-EI-6882-01 X 128703340 128703340 C T OCRL Silent p.S522S 0.75 TCGA-EI-6882-01 X 142968315 142968315 C A UBE2NL 3'UTR 0.74 TCGA-EI-6882-01 X 149832024 149832024 G A MTM1 Missense_Mutation p.R529H 0.75 deleterious(0.05) probably_damaging(0.993) TCGA-EI-6882-01 X 152482513 152482513 G A MAGEA1 Silent p.G166G 0.09 TCGA-EI-6882-01 X 153296806 153296806 G A MECP2 Missense_Mutation p.T170M 0.55 deleterious(0) probably_damaging(0.999) TCGA-EI-6882-01 X 153688713 153688713 C T PLXNA3 Missense_Mutation p.R64W 0.83 deleterious(0.02) probably_damaging(0.989) TCGA-EI-6882-01 X 1546739 1546739 G A ASMTL Missense_Mutation p.A262V 0.22 tolerated(0.4) benign(0.002) TCGA-EI-6882-01 X 1719704 1719704 C T AKAP17A Silent p.R435R 0.52 TCGA-EI-6882-01 X 30237716 30237716 A C MAGEB2 3'UTR 0.23 TCGA-EI-6882-01 X 30254199 30254199 A C MAGEB3 Missense_Mutation p.K53T 0.82 tolerated(0.64) benign(0.038) TCGA-EI-6882-01 X 34148581 34148581 C T FAM47A Silent p.S605S 0.66 TCGA-EI-6882-01 X 44922975 44922975 A C KDM6A Silent p.R612R 0.16 TCGA-EI-6882-01 X 48672931 48672931 C T HDAC6 Silent p.F297F 0.35 TCGA-EI-6882-01 X 48763816 48763816 G A SLC35A2 Silent p.N93N 0.74 TCGA-EI-6882-01 X 48839723 48839723 G A GRIPAP1 Missense_Mutation p.R468C 0.85 possibly_damaging(0.899) TCGA-EI-6882-01 X 53106806 53106806 G A GPR173 Missense_Mutation p.V335I 0.69 tolerated(0.22) benign(0.129) TCGA-EI-6882-01 X 53577717 53577717 C T HUWE1 Missense_Mutation p.R3133H 0.84 possibly_damaging(0.522) TCGA-EI-6882-01 X 53587180 53587180 G A HUWE1 Missense_Mutation p.R2569C 0.69 possibly_damaging(0.689) TCGA-EI-6882-01 X 55041275 55041275 G A ALAS2 Nonsense_Mutation p.R448* 0.84 TCGA-EI-6882-01 X 65819511 65819511 C T EDA2R Missense_Mutation p.A258T 0.80 tolerated(0.27) benign(0.058) TCGA-EI-6882-01 X 67937943 67937944 GG - STARD8 Frame_Shift_Del p.G397Afs*21 0.39 TCGA-EI-6882-01 X 70470030 70470030 G A ZMYM3 Missense_Mutation p.S366L 0.43 tolerated(0.19) benign(0.009) TCGA-EI-6882-01 X 70518584 70518584 C T NONO Missense_Mutation p.A400V 0.92 tolerated(0.12) benign(0.012) TCGA-EI-6882-01 X 70836377 70836377 C T CXCR3 Silent p.P362P 0.70 TCGA-EI-6882-01 X 73961772 73961772 A T KIAA2022 Missense_Mutation p.S874T 0.19 deleterious(0) possibly_damaging(0.656) TCGA-EI-6882-01 X 73963390 73963390 T C KIAA2022 Silent p.Q334Q 0.78 TCGA-EI-6882-01 X 76937065 76937065 G T ATRX Missense_Mutation p.P1228H 0.79 possibly_damaging(0.677) TCGA-EI-6882-01 X 7811667 7811667 C T VCX Silent p.S77S 0.59 TCGA-EI-6882-01 X 7811850 7811850 C T VCX Silent p.S138S 0.14 TCGA-EI-6882-01 X 8138139 8138139 G A VCX2 Silent p.S118S 0.73 TCGA-EI-6882-01 X 90692211 90692211 A - PABPC5 3'UTR 0.41 TCGA-EI-6882-01 X 91132293 91132293 G A PCDH11X Missense_Mutation p.V352I 0.71 tolerated(0.19) benign(0.003) TCGA-EI-6882-01 Y 6736939 6736939 A C AMELY Intron 0.85 TCGA-EI-6883-01 10 22680685 22680685 T C SPAG6 Missense_Mutation p.S345P 0.27 tolerated(0.35) benign(0.431) TCGA-EI-6883-01 10 26455081 26455081 G A MYO3A Missense_Mutation p.D1029N 0.43 deleterious(0.02) benign(0.052) TCGA-EI-6883-01 10 38344775 38344775 C T ZNF33A Missense_Mutation p.H575Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6883-01 11 10823610 10823610 A G EIF4G2 Missense_Mutation p.F429L 0.42 tolerated(0.54) benign(0.323) TCGA-EI-6883-01 11 126136172 126136172 A T SRPR Missense_Mutation p.I281N 0.35 tolerated(0.29) benign(0.02) TCGA-EI-6883-01 11 31436395 31436395 G A DNAJC24 Missense_Mutation p.G50E 0.44 tolerated(0.4) benign(0.047) TCGA-EI-6883-01 11 5842359 5842359 G A OR52N2 Missense_Mutation p.R265H 0.41 deleterious(0.05) benign(0.081) TCGA-EI-6883-01 11 66627203 66627203 G A LRFN4 Missense_Mutation p.G482E 0.33 tolerated(0.15) benign(0.018) TCGA-EI-6883-01 11 73359996 73360008 TGGGGGCTTCTCT - PLEKHB1 Intron 0.27 TCGA-EI-6883-01 11 92523302 92523302 G A FAT3 Missense_Mutation p.R1510Q 0.40 probably_damaging(0.982) TCGA-EI-6883-01 12 11091149 11091149 C T TAS2R14 Missense_Mutation p.G220R 0.51 tolerated(1) benign(0.003) TCGA-EI-6883-01 12 123804467 123804469 GTT - SBNO1 In_Frame_Del p.Q926del 0.33 TCGA-EI-6883-01 12 133502168 133502168 T C ZNF605 Missense_Mutation p.K604E 0.08 tolerated(0.08) probably_damaging(0.987) TCGA-EI-6883-01 12 30863061 30863061 C T CAPRIN2 Silent p.K1003K 0.39 TCGA-EI-6883-01 12 30863062 30863062 T G CAPRIN2 Missense_Mutation p.K1003T 0.39 deleterious(0) probably_damaging(0.999) TCGA-EI-6883-01 12 43944960 43944960 C T ADAMTS20 Missense_Mutation p.E69K 0.48 tolerated(0.45) benign(0.216) TCGA-EI-6883-01 12 4737232 4737232 G A AKAP3 Missense_Mutation p.A279V 0.11 deleterious(0.03) benign(0.345) TCGA-EI-6883-01 12 49521939 49521939 C T TUBA1B Silent p.E386E 0.29 TCGA-EI-6883-01 12 50036363 50036363 G A PRPF40B Missense_Mutation p.V675I 0.38 tolerated(0.49) benign(0.111) TCGA-EI-6883-01 12 5154539 5154539 G A KCNA5 Missense_Mutation p.R409H 0.47 deleterious(0) probably_damaging(0.999) TCGA-EI-6883-01 12 667680 667680 C G B4GALNT3 Missense_Mutation p.H872D 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-EI-6883-01 12 9348973 9348973 C T PZP Missense_Mutation p.V349M 0.32 tolerated(0.08) probably_damaging(0.987) TCGA-EI-6883-01 13 52715163 52715163 C T NEK3 Intron 0.92 TCGA-EI-6883-01 14 51230543 51230543 C T NIN Splice_Site p.X592_splice 0.09 TCGA-EI-6883-01 14 64937765 64937765 A C AKAP5 3'UTR 0.37 TCGA-EI-6883-01 15 24926885 24926886 - T NPAP1 3'UTR 0.29 TCGA-EI-6883-01 15 45003781 45003782 CT - B2M Frame_Shift_Del p.L15Ffs*41 0.47 TCGA-EI-6883-01 16 14721149 14721149 A - PARN Frame_Shift_Del p.F74Lfs*11 0.31 TCGA-EI-6883-01 16 55705911 55705911 C T SLC6A2 Silent p.I156I 0.34 TCGA-EI-6883-01 16 61851567 61851567 G A CDH8 Missense_Mutation p.R365C 0.71 deleterious(0) probably_damaging(0.924) TCGA-EI-6883-01 16 67695577 67695577 C T PARD6A Missense_Mutation p.R95W 0.48 deleterious(0) probably_damaging(0.987) TCGA-EI-6883-01 16 87724094 87724094 T A JPH3 Missense_Mutation p.S710T 0.44 tolerated(0.05) benign(0.003) TCGA-EI-6883-01 17 26604171 26604171 C T AC061975.8 5'Flank 0.41 TCGA-EI-6883-01 17 33749545 33749545 C T SLFN12 Missense_Mutation p.C168Y 0.45 tolerated(0.27) benign(0.015) TCGA-EI-6883-01 17 39881168 39881168 C T HAP1 Missense_Mutation p.E549K 0.39 deleterious_low_confidence(0.02) benign(0.316) TCGA-EI-6883-01 17 40843994 40843994 C T CNTNAP1 Missense_Mutation p.R839W 0.43 deleterious(0) probably_damaging(0.999) TCGA-EI-6883-01 17 54672049 54672049 C - NOG Frame_Shift_Del p.V157Cfs*17 0.30 TCGA-EI-6883-01 17 6023676 6023676 G A WSCD1 Missense_Mutation p.V475I 0.18 deleterious(0.04) possibly_damaging(0.887) TCGA-EI-6883-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.62 deleterious(0) probably_damaging(1) TCGA-EI-6883-01 17 76968441 76968441 C T LGALS3BP Silent p.V325V 0.19 TCGA-EI-6883-01 17 9086250 9086250 C A NTN1 Missense_Mutation p.P459T 0.29 tolerated(0.24) possibly_damaging(0.908) TCGA-EI-6883-01 18 24127929 24127929 G A KCTD1 Intron 0.62 TCGA-EI-6883-01 18 66344313 66344313 C T TMX3 Missense_Mutation p.E408K 0.53 deleterious_low_confidence(0.03) benign(0.042) TCGA-EI-6883-01 18 909533 909533 G A ADCYAP1 Missense_Mutation p.R143H 0.68 deleterious(0) probably_damaging(0.998) TCGA-EI-6883-01 19 12812635 12812635 G A TNPO2 Silent p.N814N 0.12 TCGA-EI-6883-01 19 37383339 37383339 A G ZNF829 Silent p.S199S 0.71 TCGA-EI-6883-01 19 51172430 51172430 C T SHANK1 Silent p.P929P 0.71 TCGA-EI-6883-01 19 5657359 5657359 G T SAFB Splice_Site p.X621_splice 0.11 TCGA-EI-6883-01 19 56688491 56688491 C T GALP Missense_Mutation p.S5F 0.75 deleterious_low_confidence(0.02) unknown(0) TCGA-EI-6883-01 19 6743745 6743745 T G TRIP10 Missense_Mutation p.S180R 0.08 tolerated(0.5) benign(0.084) TCGA-EI-6883-01 1 10221247 10221247 C T UBE4B Missense_Mutation p.T1034M 0.43 deleterious(0.02) probably_damaging(0.958) TCGA-EI-6883-01 1 142804543 142804543 G A RP11-423O2.5 RNA 0.24 TCGA-EI-6883-01 1 152188108 152188108 C A HRNR Missense_Mutation p.Q1999H 0.16 unknown(0) TCGA-EI-6883-01 1 154317582 154317582 G T ATP8B2 Missense_Mutation p.V841L 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-EI-6883-01 1 154471631 154471631 G A SHE Silent p.N225N 0.48 TCGA-EI-6883-01 1 16889795 16889795 G A NBPF1 3'UTR 0.36 TCGA-EI-6883-01 1 176833632 176833632 G T ASTN1 Missense_Mutation p.L1225I 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6883-01 1 183221857 183221857 G A NMNAT2 Silent p.D281D 0.27 TCGA-EI-6883-01 1 216373317 216373317 T G USH2A Missense_Mutation p.S1155R 0.11 benign(0.392) TCGA-EI-6883-01 1 217784280 217784280 T G GPATCH2 Missense_Mutation p.E323D 0.37 tolerated(0.49) benign(0.003) TCGA-EI-6883-01 1 248685673 248685673 G A OR2G6 Silent p.S242S 0.43 TCGA-EI-6883-01 1 37948760 37948760 C T ZC3H12A Missense_Mutation p.L450F 0.40 tolerated(0.14) benign(0.134) TCGA-EI-6883-01 1 40131829 40131829 G A NT5C1A Missense_Mutation p.T72M 0.36 deleterious(0.03) benign(0.223) TCGA-EI-6883-01 1 43394886 43394886 C T SLC2A1 Missense_Mutation p.V323M 0.38 deleterious(0) probably_damaging(0.991) TCGA-EI-6883-01 20 31596462 31596462 C T BPIFB2 Nonsense_Mutation p.R28* 0.64 TCGA-EI-6883-01 20 61389674 61389674 A G NTSR1 Missense_Mutation p.M325V 0.14 deleterious(0.03) benign(0.107) TCGA-EI-6883-01 20 61511868 61511868 G A DIDO1 Nonsense_Mutation p.Q1814* 0.17 TCGA-EI-6883-01 21 44949685 44949685 G A HSF2BP Silent p.T318T 0.34 TCGA-EI-6883-01 21 46226772 46226772 G A SUMO3 3'UTR 0.41 TCGA-EI-6883-01 2 152492828 152492828 A T NEB Missense_Mutation p.N3005K 0.43 benign(0.277) TCGA-EI-6883-01 2 1667445 1667445 T C PXDN Missense_Mutation p.Y500C 0.25 deleterious(0) probably_damaging(0.969) TCGA-EI-6883-01 2 180409657 180409657 C T ZNF385B Missense_Mutation p.R98H 0.38 tolerated(0.15) benign(0.109) TCGA-EI-6883-01 2 201756731 201756731 A G NIF3L1 Missense_Mutation p.N22S 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-EI-6883-01 2 210860092 210860092 G T UNC80 Missense_Mutation p.D3184Y 0.43 benign(0.055) TCGA-EI-6883-01 2 220379756 220379756 G A ASIC4 Missense_Mutation p.A231T 0.21 tolerated(0.44) possibly_damaging(0.837) TCGA-EI-6883-01 2 55071369 55071369 G A EML6 Missense_Mutation p.D345N 0.45 tolerated(0.06) probably_damaging(0.915) TCGA-EI-6883-01 3 142168302 142168302 T G ATR Missense_Mutation p.Q2635P 0.42 deleterious(0) probably_damaging(0.987) TCGA-EI-6883-01 3 186006581 186006581 C T DGKG Silent p.S154S 0.40 TCGA-EI-6883-01 3 194084107 194084107 C A LRRC15 5'Flank 0.40 TCGA-EI-6883-01 3 47614203 47614203 G A CSPG5 Missense_Mutation p.T452M 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6883-01 3 49569055 49569055 C T DAG1 Missense_Mutation p.R371W 0.40 deleterious(0) possibly_damaging(0.816) TCGA-EI-6883-01 3 56115005 56115005 G A ERC2 Missense_Mutation p.A494V 0.30 deleterious(0) probably_damaging(0.915) TCGA-EI-6883-01 3 9845617 9845617 G T ARPC4 Nonsense_Mutation p.E160* 0.43 TCGA-EI-6883-01 4 138450865 138450865 C T PCDH18 Missense_Mutation p.R793Q 0.37 deleterious(0.03) possibly_damaging(0.631) TCGA-EI-6883-01 4 159048495 159048495 T G FAM198B 3'UTR 0.46 TCGA-EI-6883-01 4 183714116 183714116 G A TENM3 Silent p.S2097S 0.34 TCGA-EI-6883-01 4 2097596 2097596 C T POLN Missense_Mutation p.A683T 0.14 deleterious(0) benign(0.228) TCGA-EI-6883-01 4 46099280 46099280 A G GABRG1 Missense_Mutation p.I64T 0.39 tolerated(0.07) benign(0.13) TCGA-EI-6883-01 4 55593430 55593430 C T KIT Silent p.F529F 0.42 TCGA-EI-6883-01 4 71501581 71501581 C T ENAM Silent p.P168P 0.35 TCGA-EI-6883-01 4 72622552 72622553 - T GC Frame_Shift_Ins p.T323Nfs*33 0.13 TCGA-EI-6883-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.49 TCGA-EI-6883-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.32 TCGA-EI-6883-01 5 140475903 140475903 C T PCDHB2 Missense_Mutation p.A510V 0.47 deleterious_low_confidence(0.01) benign(0.327) TCGA-EI-6883-01 5 140515719 140515719 A G PCDHB5 Missense_Mutation p.N235D 0.32 deleterious_low_confidence(0) benign(0.009) TCGA-EI-6883-01 5 140558615 140558615 G A PCDHB8 Missense_Mutation p.V334I 0.13 tolerated_low_confidence(0.11) benign(0.037) TCGA-EI-6883-01 5 1443280 1443280 C T SLC6A3 Missense_Mutation p.M11I 0.39 deleterious(0.01) benign(0.016) TCGA-EI-6883-01 5 171766236 171766236 C T SH3PXD2B Missense_Mutation p.E625K 0.25 deleterious(0.05) possibly_damaging(0.488) TCGA-EI-6883-01 5 37443390 37443390 G A WDR70 Missense_Mutation p.G201E 0.30 deleterious(0) probably_damaging(0.995) TCGA-EI-6883-01 5 5303789 5303789 C T ADAMTS16 Silent p.S1032S 0.57 TCGA-EI-6883-01 5 68737522 68737522 T G MARVELD2 3'UTR 0.46 TCGA-EI-6883-01 5 72469403 72469403 G A TMEM174 Silent p.S111S 0.47 TCGA-EI-6883-01 6 158288665 158288665 G A SNX9 Silent p.P33P 0.37 TCGA-EI-6883-01 6 160230086 160230086 C G PNLDC1 Missense_Mutation p.L216V 0.46 tolerated(0.09) probably_damaging(0.961) TCGA-EI-6883-01 6 22292868 22292868 G A PRL Missense_Mutation p.R71W 0.67 deleterious(0) probably_damaging(0.945) TCGA-EI-6883-01 6 292529 292529 C T DUSP22 5'UTR 0.57 TCGA-EI-6883-01 7 111629201 111629201 G T DOCK4 Silent p.L111L 0.28 TCGA-EI-6883-01 7 12610497 12610497 C T SCIN Silent p.L29L 0.33 TCGA-EI-6883-01 7 70255514 70255514 C G AUTS2 Silent p.L1104L 0.27 TCGA-EI-6883-01 7 72744195 72744195 G A FKBP6 Missense_Mutation p.R103Q 0.23 deleterious(0.05) benign(0.021) TCGA-EI-6883-01 7 94928087 94928087 A G PON1 3'UTR 0.33 TCGA-EI-6883-01 8 142441125 142441130 CCCGGT - PTP4A3 In_Frame_Del p.T168_C170delinsS 0.58 TCGA-EI-6883-01 8 143625642 143625642 C T BAI1 Missense_Mutation p.T1540M 0.19 deleterious(0.02) probably_damaging(0.971) TCGA-EI-6883-01 8 39836687 39836687 A G IDO2 Silent p.G112G 0.27 TCGA-EI-6883-01 8 41582036 41582036 C T ANK1 Missense_Mutation p.E250K 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-EI-6883-01 8 65495038 65495038 A T BHLHE22 3'UTR 0.68 TCGA-EI-6883-01 8 71619374 71619374 C T XKR9 Missense_Mutation p.A160V 0.21 tolerated(0.34) benign(0.005) TCGA-EI-6883-01 8 88885469 88885469 C T DCAF4L2 Missense_Mutation p.R244H 0.66 deleterious(0) probably_damaging(0.953) TCGA-EI-6883-01 8 99440340 99440340 C T KCNS2 Missense_Mutation p.R45C 0.18 deleterious(0.01) possibly_damaging(0.541) TCGA-EI-6883-01 9 126777429 126777429 T C LHX2 Missense_Mutation p.C118R 0.09 deleterious(0) probably_damaging(0.948) TCGA-EI-6883-01 9 86617660 86617660 G C RMI1 Missense_Mutation p.D587H 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6883-01 X 128948769 128948769 G A ZDHHC9 Missense_Mutation p.R164C 0.84 deleterious(0) probably_damaging(0.998) TCGA-EI-6883-01 X 142967543 142967543 A T UBE2NL Missense_Mutation p.N114I 0.80 deleterious(0.03) benign(0.094) TCGA-EI-6883-01 X 49081350 49081350 G A CACNA1F Missense_Mutation p.R595C 0.86 deleterious(0.01) probably_damaging(1) TCGA-EI-6883-01 X 71354446 71354446 G A NHSL2 Missense_Mutation p.D218N 0.76 tolerated(0.06) benign(0.037) TCGA-EI-6884-01 10 118460553 118460553 G A HSPA12A Silent p.F114F 0.22 TCGA-EI-6884-01 10 429979 429979 C T DIP2C Missense_Mutation p.G622S 0.23 deleterious(0) possibly_damaging(0.867) TCGA-EI-6884-01 10 97919622 97919622 A G ZNF518A RNA 0.09 TCGA-EI-6884-01 11 103124169 103124169 C T DYNC2H1 Nonsense_Mutation p.R3407* 0.20 TCGA-EI-6884-01 11 10622599 10622599 C T MRVI1 Missense_Mutation p.R628H 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6884-01 11 11373984 11373984 C T CSNK2A3 Missense_Mutation p.R228Q 0.21 tolerated(0.09) benign(0.113) TCGA-EI-6884-01 11 1266508 1266508 G A MUC5B Missense_Mutation p.G2800S 0.19 unknown(0) TCGA-EI-6884-01 11 13375965 13375965 G A ARNTL Missense_Mutation p.R37H 0.12 deleterious(0) probably_damaging(0.997) TCGA-EI-6884-01 11 17415927 17415927 G A ABCC8 Silent p.G1477G 0.19 TCGA-EI-6884-01 11 18750525 18750525 T A PTPN5 Missense_Mutation p.M552L 0.18 tolerated(1) benign(0.066) TCGA-EI-6884-01 11 40137693 40137693 C T LRRC4C Silent p.V50V 0.15 TCGA-EI-6884-01 11 47267196 47267196 C - ACP2 Intron 0.18 TCGA-EI-6884-01 11 55136065 55136065 G T OR4A15 Missense_Mutation p.A236S 0.23 tolerated_low_confidence(0.14) benign(0.013) TCGA-EI-6884-01 11 64000258 64000258 C A DNAJC4 Missense_Mutation p.H150N 0.12 tolerated(0.07) benign(0.003) TCGA-EI-6884-01 11 68542882 68542882 T C CPT1A Missense_Mutation p.S493G 0.12 tolerated(0.31) benign(0.002) TCGA-EI-6884-01 11 68542883 68542883 G A CPT1A Silent p.D492D 0.16 TCGA-EI-6884-01 11 74716765 74716765 G C NEU3 Missense_Mutation p.G205A 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6884-01 11 78468009 78468009 T C TENM4 Missense_Mutation p.N866S 0.23 tolerated(1) benign(0) TCGA-EI-6884-01 11 8060477 8060477 G A TUB Silent p.G19G 0.14 TCGA-EI-6884-01 11 8060479 8060479 T A TUB Missense_Mutation p.I20N 0.13 deleterious_low_confidence(0) benign(0.027) TCGA-EI-6884-01 11 8060480 8060480 T A TUB Silent p.I20I 0.13 TCGA-EI-6884-01 11 86519568 86519568 T A PRSS23 Missense_Mutation p.C295S 0.11 deleterious(0) probably_damaging(1) TCGA-EI-6884-01 12 112717167 112717167 G A HECTD4 Silent p.L374L 0.15 TCGA-EI-6884-01 12 120966888 120966888 C T COQ5 Silent p.R19R 0.15 TCGA-EI-6884-01 12 123341590 123341590 G A HIP1R Missense_Mutation p.R548Q 0.13 tolerated(1) benign(0.004) TCGA-EI-6884-01 12 130648326 130648326 G A FZD10 Missense_Mutation p.R280H 0.17 deleterious(0) probably_damaging(0.998) TCGA-EI-6884-01 12 130649917 130649917 G C FZD10 3'UTR 0.29 TCGA-EI-6884-01 12 14930227 14930227 T G H2AFJ 3'UTR 0.08 TCGA-EI-6884-01 12 41967569 41967569 G T PDZRN4 Missense_Mutation p.M996I 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-EI-6884-01 12 4460467 4460467 A G C12orf5 Missense_Mutation p.E102G 0.11 deleterious(0.02) possibly_damaging(0.694) TCGA-EI-6884-01 12 53165710 53165710 T C KRT76 Missense_Mutation p.E403G 0.25 deleterious(0) probably_damaging(0.992) TCGA-EI-6884-01 12 56641930 56641930 G A ANKRD52 Missense_Mutation p.R619W 0.12 deleterious(0.01) possibly_damaging(0.518) TCGA-EI-6884-01 12 65722328 65722328 C G MSRB3 Missense_Mutation p.H77D 0.20 tolerated(0.74) benign(0.018) TCGA-EI-6884-01 12 93803447 93803448 - AAAAT UBE2N 3'UTR 0.09 TCGA-EI-6884-01 13 103451059 103451059 A G KDELC1 5'UTR 0.09 TCGA-EI-6884-01 13 19751656 19751656 C T TUBA3C Missense_Mutation p.R156Q 0.54 deleterious_low_confidence(0.04) benign(0.014) TCGA-EI-6884-01 13 37679406 37679406 A G CSNK1A1L 5'UTR 0.16 TCGA-EI-6884-01 14 33293359 33293360 TC - AKAP6 Frame_Shift_Del p.S2116Ifs*3 0.23 TCGA-EI-6884-01 14 45667940 45667940 G T FANCM Missense_Mutation p.C1937F 0.29 deleterious(0) probably_damaging(0.935) TCGA-EI-6884-01 14 59112892 59112892 C T DACT1 Silent p.G517G 0.29 TCGA-EI-6884-01 14 64989833 64989833 T G ZBTB1 Silent p.P537P 0.27 TCGA-EI-6884-01 15 101041961 101041961 C T CERS3 Missense_Mutation p.V32I 0.21 tolerated(0.16) benign(0.026) TCGA-EI-6884-01 15 51741273 51741273 G T DMXL2 Silent p.R3008R 0.28 TCGA-EI-6884-01 16 1478499 1478499 G A C16orf91 Missense_Mutation p.A51V 0.26 tolerated_low_confidence(1) benign(0) TCGA-EI-6884-01 16 20792337 20792337 C T ACSM3 Missense_Mutation p.T275I 0.23 tolerated(0.71) possibly_damaging(0.745) TCGA-EI-6884-01 16 2333285 2333285 A G ABCA3 Missense_Mutation p.S1313P 0.08 tolerated(0.12) possibly_damaging(0.722) TCGA-EI-6884-01 16 30515570 30515570 G A ITGAL Silent p.P740P 0.18 TCGA-EI-6884-01 16 31419217 31419219 AGA - ITGAD In_Frame_Del p.K331del 0.12 TCGA-EI-6884-01 16 57597004 57597004 C G GPR114 Missense_Mutation p.Q48E 0.24 tolerated(0.37) benign(0.002) TCGA-EI-6884-01 17 31344621 31344621 A T ASIC2 Splice_Site p.X507_splice 0.10 TCGA-EI-6884-01 17 44051786 44051786 G A MAPT Missense_Mutation p.G86S 0.09 tolerated(0.13) benign(0.012) TCGA-EI-6884-01 17 45299096 45299096 A G MYL4 Missense_Mutation p.Q121R 0.08 deleterious(0) probably_damaging(0.976) TCGA-EI-6884-01 17 62856474 62856474 C A LRRC37A3 Missense_Mutation p.A1264S 0.17 tolerated(0.45) benign(0.175) TCGA-EI-6884-01 17 73497902 73497902 G A CASKIN2 Missense_Mutation p.P1085S 0.25 tolerated(0.25) benign(0.004) TCGA-EI-6884-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.25 TCGA-EI-6884-01 17 9683147 9683147 G A DHRS7C Missense_Mutation p.T159M 0.21 deleterious(0) probably_damaging(0.938) TCGA-EI-6884-01 18 47801984 47801984 G A MBD1 Nonsense_Mutation p.R260* 0.27 TCGA-EI-6884-01 18 56246466 56246466 C T ALPK2 Silent p.T514T 0.26 TCGA-EI-6884-01 19 22155969 22155969 T A ZNF208 Missense_Mutation p.T623S 0.09 tolerated(0.83) benign(0) TCGA-EI-6884-01 19 37619199 37619199 C T ZNF420 Nonsense_Mutation p.R436* 0.16 TCGA-EI-6884-01 19 40405916 40405916 C G FCGBP Intron 0.32 TCGA-EI-6884-01 19 40520654 40520654 G A ZNF546 Missense_Mutation p.G493S 0.15 deleterious(0) probably_damaging(0.953) TCGA-EI-6884-01 19 42470940 42470940 C T ATP1A3 3'UTR 0.29 TCGA-EI-6884-01 19 44096919 44096919 C A IRGQ Silent p.S377S 0.17 TCGA-EI-6884-01 19 52658319 52658319 G A ZNF836 Missense_Mutation p.R873W 0.18 tolerated(0.16) probably_damaging(0.996) TCGA-EI-6884-01 19 54754652 54754652 A G LILRB5 Nonstop_Mutation p.*592Qext*59 0.15 TCGA-EI-6884-01 19 55112220 55112220 T G LILRA1 Missense_Mutation p.L470V 0.20 tolerated(0.06) benign(0.081) TCGA-EI-6884-01 1 10425667 10425667 C T KIF1B Silent p.I1525I 0.43 TCGA-EI-6884-01 1 1273753 1273753 C T DVL1 Missense_Mutation p.R443Q 0.21 deleterious(0.01) benign(0.178) TCGA-EI-6884-01 1 153662409 153662409 G A NPR1 Missense_Mutation p.R962H 0.24 tolerated(0.09) possibly_damaging(0.603) TCGA-EI-6884-01 1 158725190 158725190 T G OR6K6 Silent p.P195P 0.31 TCGA-EI-6884-01 1 160171124 160171124 C T CASQ1 Silent p.G383G 0.11 TCGA-EI-6884-01 1 169500117 169500117 A T F5 Missense_Mutation p.S1705R 0.40 deleterious(0) probably_damaging(0.94) TCGA-EI-6884-01 1 196696043 196696043 G A CFH Missense_Mutation p.V737I 0.24 tolerated(0.19) benign(0.092) TCGA-EI-6884-01 1 215844542 215844542 T C USH2A Silent p.Q4635Q 0.18 TCGA-EI-6884-01 1 237791171 237791171 C A RYR2 Missense_Mutation p.D2077E 0.39 possibly_damaging(0.695) TCGA-EI-6884-01 1 40149810 40149810 G A HPCAL4 Silent p.G59G 0.30 TCGA-EI-6884-01 20 18370468 18370468 G A DZANK1 Missense_Mutation p.A632V 0.19 deleterious(0) possibly_damaging(0.899) TCGA-EI-6884-01 20 3214842 3214842 C T SLC4A11 Missense_Mutation p.R180Q 0.21 tolerated(0.34) possibly_damaging(0.812) TCGA-EI-6884-01 20 44869771 44869771 G A CDH22 Silent p.R127R 0.18 TCGA-EI-6884-01 21 17912212 17912212 C T MIRLET7C RNA 0.28 TCGA-EI-6884-01 21 34927593 34927593 G A SON Missense_Mutation p.R2019Q 0.30 unknown(0) TCGA-EI-6884-01 21 37408485 37408485 C T SETD4 Nonsense_Mutation p.W418* 0.10 TCGA-EI-6884-01 21 45941993 45941993 C T TSPEAR Missense_Mutation p.D447N 0.04 tolerated(0.46) benign(0.007) TCGA-EI-6884-01 22 39885211 39885211 G - MGAT3 3'UTR 0.21 TCGA-EI-6884-01 22 50720051 50720051 G C PLXNB2 Missense_Mutation p.P1156A 0.51 deleterious(0) probably_damaging(0.998) TCGA-EI-6884-01 2 1161322 1161323 - T SNTG2 Splice_Site p.X167_splice 0.08 TCGA-EI-6884-01 2 152567031 152567031 C A NEB Nonsense_Mutation p.E282* 0.18 TCGA-EI-6884-01 2 15496539 15496539 A T NBAS Silent p.G1273G 0.17 TCGA-EI-6884-01 2 179474920 179474920 G A TTN Silent p.L17111L 0.20 TCGA-EI-6884-01 2 179600414 179600414 G A TTN Missense_Mutation p.T4920M 0.20 TCGA-EI-6884-01 2 179611639 179611639 C T TTN Intron 0.23 TCGA-EI-6884-01 2 187608227 187608227 C A FAM171B Missense_Mutation p.L164I 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6884-01 2 198950009 198950009 T G PLCL1 Missense_Mutation p.S590A 0.08 tolerated(0.31) benign(0.085) TCGA-EI-6884-01 2 201846442 201846442 G A FAM126B Missense_Mutation p.R382C 0.14 deleterious(0.01) possibly_damaging(0.684) TCGA-EI-6884-01 2 220041594 220041594 G A CNPPD1 Intron 0.26 TCGA-EI-6884-01 2 32667490 32667490 A G BIRC6 Missense_Mutation p.H1402R 0.20 probably_damaging(0.977) TCGA-EI-6884-01 2 39997113 39997114 - T THUMPD2 Frame_Shift_Ins p.V137Sfs*5 0.14 TCGA-EI-6884-01 2 73868584 73868584 C T NAT8 Missense_Mutation p.G58R 0.21 deleterious(0) possibly_damaging(0.903) TCGA-EI-6884-01 2 86276363 86276363 C T POLR1A Missense_Mutation p.V799M 0.17 deleterious(0.01) benign(0.409) TCGA-EI-6884-01 3 142567066 142567066 G A PCOLCE2 Silent p.N147N 0.17 TCGA-EI-6884-01 3 150877792 150877792 C T MED12L Silent p.P337P 0.47 TCGA-EI-6884-01 3 151176320 151176320 C T IGSF10 Missense_Mutation p.E60K 0.08 deleterious(0) probably_damaging(0.999) TCGA-EI-6884-01 3 195398031 195398031 G A SDHAP2 RNA 0.12 TCGA-EI-6884-01 3 37058995 37058995 A G MLH1 Splice_Site p.X264_splice 0.08 TCGA-EI-6884-01 3 38927621 38927621 G A SCN11A Nonsense_Mutation p.R982* 0.20 TCGA-EI-6884-01 3 54933874 54933874 C T CACNA2D3 Missense_Mutation p.R810W 0.15 deleterious(0.01) possibly_damaging(0.891) TCGA-EI-6884-01 3 57443482 57443482 C T DNAH12 Missense_Mutation p.R1078Q 0.17 tolerated(0.11) possibly_damaging(0.553) TCGA-EI-6884-01 3 69987175 69987175 C T MITF Missense_Mutation p.T186M 0.17 deleterious(0) probably_damaging(0.979) TCGA-EI-6884-01 4 134072849 134072849 C G PCDH10 Missense_Mutation p.I518M 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6884-01 4 158282688 158282688 A C GRIA2 Splice_Site p.X764_splice 0.09 TCGA-EI-6884-01 4 164272377 164272377 T C NPY5R Missense_Mutation p.S318P 0.08 tolerated(0.15) benign(0.017) TCGA-EI-6884-01 4 187004726 187004726 T C TLR3 Missense_Mutation p.V629A 0.26 deleterious(0.01) probably_damaging(0.966) TCGA-EI-6884-01 4 188924831 188924831 T C ZFP42 Silent p.N290N 0.19 TCGA-EI-6884-01 4 47582484 47582484 G T ATP10D Missense_Mutation p.V1213L 0.09 tolerated(0.09) benign(0.057) TCGA-EI-6884-01 4 57215704 57215704 G T AASDH Missense_Mutation p.A738E 0.21 tolerated(0.16) benign(0.003) TCGA-EI-6884-01 4 5830266 5830266 G A CRMP1 Missense_Mutation p.R585W 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6884-01 4 88732910 88732910 G A IBSP Missense_Mutation p.A268T 0.09 tolerated(1) benign(0.003) TCGA-EI-6884-01 5 112174481 112174481 G T APC Nonsense_Mutation p.E1064* 0.13 TCGA-EI-6884-01 5 112176027 112176030 TTAT - APC Frame_Shift_Del p.I1580Lfs*69 0.19 TCGA-EI-6884-01 5 140565518 140565518 T G PCDHB16 3'UTR 0.34 TCGA-EI-6884-01 5 149398147 149398147 C T HMGXB3 Missense_Mutation p.R310W 0.27 deleterious(0) probably_damaging(0.955) TCGA-EI-6884-01 5 156786115 156786115 G A CYFIP2 Missense_Mutation p.A900T 0.22 tolerated(0.06) probably_damaging(0.91) TCGA-EI-6884-01 5 157214866 157214866 C T CLINT1 Missense_Mutation p.V574M 0.21 tolerated(0.43) benign(0.002) TCGA-EI-6884-01 5 38407202 38407202 G A EGFLAM Silent p.S367S 0.24 TCGA-EI-6884-01 5 64020162 64020162 C T SREK1IP1 3'UTR 0.20 TCGA-EI-6884-01 6 119345625 119345625 G A FAM184A Silent p.S171S 0.23 TCGA-EI-6884-01 6 131908010 131908010 T A MED23 3'UTR 0.26 TCGA-EI-6884-01 6 131908011 131908011 A T MED23 3'UTR 0.26 TCGA-EI-6884-01 6 152470727 152470727 T G SYNE1 Missense_Mutation p.K8176T 0.12 probably_damaging(0.952) TCGA-EI-6884-01 6 35762943 35762943 C T CLPS Missense_Mutation p.A107T 0.10 tolerated(0.28) benign(0.002) TCGA-EI-6884-01 7 106830734 106830734 G T HBP1 Missense_Mutation p.D347Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-EI-6884-01 7 21598565 21598565 T G DNAH11 Missense_Mutation p.I214S 0.19 possibly_damaging(0.733) TCGA-EI-6884-01 7 31146202 31146202 C A ADCYAP1R1 Missense_Mutation p.S465R 0.38 tolerated(0.24) probably_damaging(0.979) TCGA-EI-6884-01 7 4856949 4856949 G A RADIL Missense_Mutation p.T550M 0.35 deleterious(0) probably_damaging(0.985) TCGA-EI-6884-01 7 75203167 75203167 G A HIP1 Missense_Mutation p.T215M 0.19 tolerated(0.42) probably_damaging(1) TCGA-EI-6884-01 7 88963983 88963983 A T ZNF804B Nonsense_Mutation p.K563* 0.15 TCGA-EI-6884-01 7 96653846 96653846 C T DLX5 Silent p.P30P 0.15 TCGA-EI-6884-01 8 13259087 13259087 C T DLC1 Missense_Mutation p.M355I 0.33 deleterious_low_confidence(0.04) possibly_damaging(0.889) TCGA-EI-6884-01 8 134488134 134488134 T C ST3GAL1 Missense_Mutation p.E45G 0.11 benign(0) TCGA-EI-6884-01 8 139164675 139164675 G A FAM135B Silent p.S681S 0.25 TCGA-EI-6884-01 8 2876094 2876094 A G CSMD1 Missense_Mutation p.I2645T 0.23 probably_damaging(0.995) TCGA-EI-6884-01 8 67748210 67748210 C A SGK3 Silent p.L214L 0.15 TCGA-EI-6884-01 9 139760715 139760715 G A EDF1 5'UTR 0.25 TCGA-EI-6884-01 9 40705541 40705541 G T SPATA31A3 Missense_Mutation p.M1066I 0.28 tolerated(0.67) possibly_damaging(0.584) TCGA-EI-6884-01 X 101138608 101138608 T C ZMAT1 Silent p.K597K 0.35 TCGA-EI-6884-01 X 101138609 101138609 T A ZMAT1 Missense_Mutation p.K597I 0.36 deleterious(0) probably_damaging(0.976) TCGA-EI-6884-01 X 101138610 101138610 T A ZMAT1 Nonsense_Mutation p.K597* 0.35 TCGA-EI-6884-01 X 125685527 125685527 C T DCAF12L1 Silent p.S355S 0.30 TCGA-EI-6884-01 X 137717657 137717657 T C FGF13 Missense_Mutation p.N198D 0.10 tolerated(0.36) benign(0.018) TCGA-EI-6884-01 X 15301633 15301633 G T ASB11 Nonsense_Mutation p.Y322* 0.50 TCGA-EI-6884-01 X 155227303 155227303 T C IL9R 5'UTR 0.24 TCGA-EI-6884-01 X 37026824 37026824 G A FAM47C Missense_Mutation p.R114Q 0.43 tolerated(0.12) benign(0.297) TCGA-EI-6884-01 X 49072893 49072893 A G CACNA1F Missense_Mutation p.L1073P 0.08 deleterious(0.04) benign(0.006) TCGA-EI-6885-01 10 101556902 101556902 G A ABCC2 Nonsense_Mutation p.W227* 0.28 TCGA-EI-6885-01 10 118220561 118220561 A G PNLIPRP3 Missense_Mutation p.I217V 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-EI-6885-01 10 73490290 73490290 G A CDH23 Missense_Mutation p.R1220H 0.15 tolerated(0.07) probably_damaging(0.985) TCGA-EI-6885-01 10 73767324 73767324 G A CHST3 Missense_Mutation p.A179T 0.23 tolerated(0.61) possibly_damaging(0.542) TCGA-EI-6885-01 11 106849345 106849345 C T GUCY1A2 Missense_Mutation p.G163S 0.19 deleterious(0.03) possibly_damaging(0.54) TCGA-EI-6885-01 11 117094915 117094915 C T PCSK7 Silent p.G311G 0.19 TCGA-EI-6885-01 11 117094916 117094916 C A PCSK7 Missense_Mutation p.G311V 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6885-01 11 14991582 14991582 G A CALCA Silent p.L42L 0.41 TCGA-EI-6885-01 11 61496461 61496461 A T DAGLA Missense_Mutation p.Y277F 0.17 tolerated(0.52) possibly_damaging(0.813) TCGA-EI-6885-01 11 76901775 76901775 G A MYO7A Missense_Mutation p.V1262M 0.21 deleterious(0) probably_damaging(0.999) TCGA-EI-6885-01 12 101603352 101603352 T C SLC5A8 Missense_Mutation p.Y92C 0.21 deleterious(0) probably_damaging(0.994) TCGA-EI-6885-01 12 110028601 110028601 A G MVK Missense_Mutation p.T235A 0.08 deleterious(0.01) benign(0.125) TCGA-EI-6885-01 12 112681560 112681560 C T HECTD4 Missense_Mutation p.R1406H 0.17 probably_damaging(0.985) TCGA-EI-6885-01 12 20864374 20864374 G A SLCO1C1 Silent p.P153P 0.24 TCGA-EI-6885-01 12 21358881 21358881 G A SLCO1B1 Missense_Mutation p.E471K 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-EI-6885-01 12 56579954 56579954 T C SMARCC2 Missense_Mutation p.K101R 0.10 tolerated(0.21) benign(0.292) TCGA-EI-6885-01 12 7084517 7084517 G TGT EMG1 Frame_Shift_Ins p.V199Cfs*2 0.33 TCGA-EI-6885-01 12 96640773 96640773 C T ELK3 Missense_Mutation p.P88L 0.20 deleterious(0) probably_damaging(0.992) TCGA-EI-6885-01 13 23824772 23824772 T A SGCG Missense_Mutation p.S101T 0.31 tolerated(0.09) benign(0.031) TCGA-EI-6885-01 13 26586686 26586686 G A ATP8A2 Missense_Mutation p.R1132H 0.15 tolerated(0.16) benign(0.002) TCGA-EI-6885-01 13 45973211 45973211 G C SLC25A30 Nonsense_Mutation p.S206* 0.17 TCGA-EI-6885-01 13 58208525 58208525 C T PCDH17 Silent p.S615S 0.33 TCGA-EI-6885-01 13 76427255 76427255 C T LMO7 Silent p.S1231S 0.12 TCGA-EI-6885-01 13 88330011 88330011 C T SLITRK5 Missense_Mutation p.H790Y 0.50 tolerated(1) benign(0.004) TCGA-EI-6885-01 13 98043602 98043602 G A MBNL2 3'UTR 0.29 TCGA-EI-6885-01 14 101347666 101347666 C G RTL1 Missense_Mutation p.G1154R 0.19 tolerated_low_confidence(0.09) benign(0.066) TCGA-EI-6885-01 14 101350897 101350897 T C RTL1 Missense_Mutation p.M77V 0.09 deleterious_low_confidence(0.01) benign(0.015) TCGA-EI-6885-01 14 66209075 66209075 C T FUT8 Nonsense_Mutation p.R559* 0.25 TCGA-EI-6885-01 14 75266254 75266254 A C YLPM1 Missense_Mutation p.E1418D 0.47 probably_damaging(0.979) TCGA-EI-6885-01 14 96707290 96707290 A G BDKRB2 Missense_Mutation p.T209A 0.21 deleterious(0.04) probably_damaging(0.958) TCGA-EI-6885-01 15 40866352 40866352 G A RPUSD2 Silent p.L510L 0.59 TCGA-EI-6885-01 16 48596062 48596062 A T N4BP1 Silent p.V164V 0.55 TCGA-EI-6885-01 16 49315151 49315151 C T CBLN1 Missense_Mutation p.E76K 0.48 deleterious(0.03) possibly_damaging(0.86) TCGA-EI-6885-01 16 69074286 69074286 G C TANGO6 Missense_Mutation p.V1024L 0.25 tolerated(0.06) benign(0.017) TCGA-EI-6885-01 16 86613800 86613800 G A FOXL1 3'UTR 0.09 TCGA-EI-6885-01 16 89777219 89777219 G A VPS9D1 Missense_Mutation p.R345W 0.65 tolerated(0.07) benign(0.001) TCGA-EI-6885-01 17 7579530 7579531 - T TP53 Frame_Shift_Ins p.W53Mfs*4 0.67 TCGA-EI-6885-01 17 78182134 78182134 G A CARD14 Missense_Mutation p.S1002N 0.29 tolerated(0.21) benign(0.001) TCGA-EI-6885-01 18 29450963 29450963 G C TRAPPC8 Missense_Mutation p.S728C 0.30 tolerated(0.16) benign(0.353) TCGA-EI-6885-01 19 10886475 10886475 T C DNM2 Missense_Mutation p.L161P 0.21 deleterious(0.01) possibly_damaging(0.89) TCGA-EI-6885-01 19 13265140 13265140 A G IER2 3'UTR 0.30 TCGA-EI-6885-01 19 15536523 15536523 C T WIZ Missense_Mutation p.E380K 0.35 deleterious(0) probably_damaging(0.945) TCGA-EI-6885-01 19 22939947 22939947 A G ZNF99 3'Flank 0.18 TCGA-EI-6885-01 19 31768678 31768678 G A TSHZ3 Missense_Mutation p.P674L 0.24 tolerated(0.24) benign(0) TCGA-EI-6885-01 19 35828899 35828899 G A CD22 Silent p.S320S 0.40 TCGA-EI-6885-01 19 37369179 37369179 G A ZNF345 Missense_Mutation p.E483K 0.42 tolerated_low_confidence(0.14) benign(0.004) TCGA-EI-6885-01 19 52146595 52146595 G A SIGLEC14 3'UTR 0.53 TCGA-EI-6885-01 19 56273984 56273984 G C RFPL4A Missense_Mutation p.D103H 0.06 deleterious(0.03) possibly_damaging(0.822) TCGA-EI-6885-01 19 58983054 58983054 T C ZNF324 Missense_Mutation p.C399R 0.40 deleterious(0.02) probably_damaging(1) TCGA-EI-6885-01 1 103474067 103474067 C A COL11A1 Silent p.G545G 0.65 TCGA-EI-6885-01 1 14142944 14142944 C T PRDM2 Nonsense_Mutation p.R1687* 0.43 TCGA-EI-6885-01 1 153909145 153909145 C T DENND4B Missense_Mutation p.C771Y 0.25 deleterious(0) benign(0.401) TCGA-EI-6885-01 1 181754898 181754898 A G CACNA1E Missense_Mutation p.E1910G 0.25 tolerated(0.05) benign(0.008) TCGA-EI-6885-01 1 196883716 196883716 C T CFHR4 Silent p.Y423Y 0.20 TCGA-EI-6885-01 1 200948812 200948812 C T KIF21B Silent p.T1337T 0.13 TCGA-EI-6885-01 1 20416376 20416376 G A PLA2G5 Missense_Mutation p.V94M 0.23 tolerated(0.15) benign(0) TCGA-EI-6885-01 1 217784322 217784322 A T GPATCH2 Missense_Mutation p.D309E 0.20 tolerated(0.52) benign(0.003) TCGA-EI-6885-01 1 248813774 248813774 G A OR2T27 Missense_Mutation p.R138C 0.14 tolerated(0.11) benign(0.02) TCGA-EI-6885-01 1 33237553 33237553 G A KIAA1522 Missense_Mutation p.A925T 0.15 tolerated(0.15) possibly_damaging(0.473) TCGA-EI-6885-01 1 57406583 57406583 G A C8B Missense_Mutation p.A446V 0.75 deleterious(0.04) possibly_damaging(0.651) TCGA-EI-6885-01 20 19977487 19977487 G T RIN2 Splice_Site p.X837_splice 0.08 TCGA-EI-6885-01 20 61340968 61340968 G A NTSR1 Missense_Mutation p.G137S 0.24 deleterious(0.01) probably_damaging(1) TCGA-EI-6885-01 21 31588088 31588088 C G CLDN8 Missense_Mutation p.M52I 0.43 deleterious(0) probably_damaging(0.996) TCGA-EI-6885-01 21 46918393 46918393 C T COL18A1 Intron 0.38 TCGA-EI-6885-01 21 47588228 47588228 G C SPATC1L Missense_Mutation p.L180V 0.12 tolerated(0.11) possibly_damaging(0.894) TCGA-EI-6885-01 21 47819602 47819602 A G PCNT Silent p.E1561E 0.60 TCGA-EI-6885-01 22 18769702 18769702 C T GGT3P RNA 0.34 TCGA-EI-6885-01 22 46688823 46688823 C T TTC38 3'UTR 0.35 TCGA-EI-6885-01 2 112592283 112592283 G A ANAPC1 Missense_Mutation p.A761V 0.17 tolerated(0.12) possibly_damaging(0.473) TCGA-EI-6885-01 2 179497332 179497332 C T TTN Silent p.K14467K 0.35 TCGA-EI-6885-01 2 210804331 210804331 C T UNC80 Missense_Mutation p.R2135C 0.32 probably_damaging(0.996) TCGA-EI-6885-01 2 210856944 210856944 G A UNC80 Silent p.P3057P 0.45 TCGA-EI-6885-01 2 214204977 214204977 A C SPAG16 Missense_Mutation p.L209F 0.15 deleterious(0.02) possibly_damaging(0.88) TCGA-EI-6885-01 2 234378190 234378190 C G DGKD 3'UTR 0.19 TCGA-EI-6885-01 2 235950847 235950847 C G SH3BP4 Silent p.L478L 0.33 TCGA-EI-6885-01 2 55191182 55191182 G A EML6 Missense_Mutation p.G1740R 0.28 deleterious(0) probably_damaging(0.994) TCGA-EI-6885-01 2 61180172 61180172 G A PUS10 Missense_Mutation p.A423V 0.17 tolerated(0.21) benign(0.003) TCGA-EI-6885-01 3 10312443 10312443 T C TATDN2 Missense_Mutation p.F526S 0.27 deleterious(0) probably_damaging(0.993) TCGA-EI-6885-01 3 130110377 130110377 C T COL6A5 Silent p.T924T 0.13 TCGA-EI-6885-01 3 13860669 13860669 C T WNT7A Silent p.S274S 0.18 TCGA-EI-6885-01 3 39151572 39151572 C T TTC21A Silent p.D70D 0.29 TCGA-EI-6885-01 3 46307365 46307365 G A CCR3 Missense_Mutation p.R260Q 0.16 deleterious(0.01) benign(0.278) TCGA-EI-6885-01 3 46620857 46620858 - T TDGF1 Splice_Site p.X75_splice 0.14 TCGA-EI-6885-01 3 52391641 52391641 G A DNAH1 Silent p.V1290V 0.20 TCGA-EI-6885-01 3 52824845 52824845 G A ITIH1 Missense_Mutation p.R801Q 0.20 tolerated(0.68) benign(0.055) TCGA-EI-6885-01 3 64617147 64617147 G A ADAMTS9 Silent p.D791D 0.23 TCGA-EI-6885-01 4 169167761 169167761 G A DDX60 Silent p.G1324G 0.26 TCGA-EI-6885-01 4 173873202 173873202 A G GALNTL6 Silent p.V388V 0.27 TCGA-EI-6885-01 4 183713469 183713469 G A TENM3 Missense_Mutation p.E1882K 0.46 deleterious(0) possibly_damaging(0.651) TCGA-EI-6885-01 4 189012588 189012588 C A TRIML2 Missense_Mutation p.S368I 0.20 deleterious(0.03) benign(0.141) TCGA-EI-6885-01 4 7802192 7802192 C T AFAP1 Missense_Mutation p.G415S 0.18 tolerated(0.1) probably_damaging(0.962) TCGA-EI-6885-01 4 8288324 8288324 C A HTRA3 Missense_Mutation p.S174R 0.08 deleterious(0) probably_damaging(0.976) TCGA-EI-6885-01 4 861145 861146 TC - GAK Frame_Shift_Del p.D824Rfs*3 0.31 TCGA-EI-6885-01 5 112164616 112164616 C T APC Nonsense_Mutation p.R564* 0.73 TCGA-EI-6885-01 5 118437654 118437654 A G DMXL1 Missense_Mutation p.I80V 0.73 tolerated(1) benign(0.001) TCGA-EI-6885-01 5 131409615 131409615 G C CSF2 Silent p.V33V 0.23 TCGA-EI-6885-01 5 140182243 140182243 C T PCDHA3 Silent p.N487N 0.62 TCGA-EI-6885-01 5 140741612 140741612 C T PCDHGB2 Missense_Mutation p.A637V 0.58 deleterious(0.04) benign(0.127) TCGA-EI-6885-01 5 147493997 147493997 C T SPINK5 Missense_Mutation p.R654C 0.27 deleterious(0.04) probably_damaging(0.979) TCGA-EI-6885-01 5 149511579 149511579 A G PDGFRB Silent p.D402D 0.08 TCGA-EI-6885-01 5 158524065 158524065 A G EBF1 Missense_Mutation p.F70L 0.09 deleterious(0.02) possibly_damaging(0.843) TCGA-EI-6885-01 5 36207288 36207288 T C NADK2 Missense_Mutation p.T314A 0.12 deleterious(0) possibly_damaging(0.615) TCGA-EI-6885-01 5 41159298 41159298 T C C6 Missense_Mutation p.Y581C 0.21 deleterious(0.01) probably_damaging(0.968) TCGA-EI-6885-01 6 32117122 32117122 G A PRRT1 Silent p.R266R 0.56 TCGA-EI-6885-01 6 75796078 75796078 G C COL12A1 3'UTR 0.29 TCGA-EI-6885-01 6 86203759 86203759 A C NT5E 3'UTR 0.14 TCGA-EI-6885-01 7 117864829 117864829 G A ANKRD7 5'UTR 0.33 TCGA-EI-6885-01 7 127999277 127999277 C T PRRT4 Missense_Mutation p.R228Q 0.43 tolerated_low_confidence(0.06) unknown(0) TCGA-EI-6885-01 7 143956709 143956709 T C OR2A7 Missense_Mutation p.I5V 0.07 deleterious(0.01) benign(0) TCGA-EI-6885-01 7 149544941 149544941 G A ZNF862 Missense_Mutation p.G120E 0.17 deleterious_low_confidence(0.01) benign(0.219) TCGA-EI-6885-01 7 42005359 42005359 G T GLI3 Missense_Mutation p.N1104K 0.11 tolerated(0.12) benign(0.097) TCGA-EI-6885-01 7 47927700 47927700 C G PKD1L1 Missense_Mutation p.W908C 0.52 deleterious(0) probably_damaging(0.999) TCGA-EI-6885-01 7 55492991 55492991 C T LANCL2 Silent p.S351S 0.30 TCGA-EI-6885-01 7 63982861 63982861 T G ZNF680 Missense_Mutation p.T91P 0.49 tolerated(0.09) benign(0.093) TCGA-EI-6885-01 7 70252206 70252206 A G AUTS2 Missense_Mutation p.M774V 0.10 tolerated(1) benign(0.001) TCGA-EI-6885-01 8 100454833 100454833 T G VPS13B Missense_Mutation p.F1139V 0.46 deleterious(0.01) probably_damaging(0.942) TCGA-EI-6885-01 8 110984685 110984685 G A KCNV1 Missense_Mutation p.R265W 0.05 deleterious(0.02) benign(0.013) TCGA-EI-6885-01 8 139697474 139697474 C T COL22A1 Missense_Mutation p.G982R 0.40 unknown(0) TCGA-EI-6885-01 8 146033664 146033664 C T ZNF517 Missense_Mutation p.R455C 0.13 tolerated(0.05) possibly_damaging(0.898) TCGA-EI-6885-01 8 15967647 15967647 C T MSR1 Missense_Mutation p.G435R 0.12 deleterious(0) possibly_damaging(0.588) TCGA-EI-6885-01 8 15967698 15967698 A G MSR1 Missense_Mutation p.F418L 0.11 tolerated(0.69) benign(0.004) TCGA-EI-6885-01 8 53586751 53586751 C T RB1CC1 Missense_Mutation p.R219K 0.07 tolerated(0.51) probably_damaging(0.986) TCGA-EI-6885-01 8 67813575 67813575 A T MCMDC2 Missense_Mutation p.L587F 0.05 deleterious(0.01) probably_damaging(0.988) TCGA-EI-6885-01 8 68123756 68123756 G T ARFGEF1 Missense_Mutation p.A1594D 0.24 tolerated(0.47) benign(0.003) TCGA-EI-6885-01 8 77617112 77617112 C A ZFHX4 Silent p.S263S 0.05 TCGA-EI-6885-01 8 86569672 86569672 T G REXO1L1P 3'UTR 0.11 TCGA-EI-6885-01 9 107289212 107289212 G T OR13C4 Silent p.S93S 0.57 TCGA-EI-6885-01 9 109689725 109689725 C T ZNF462 Nonsense_Mutation p.R1178* 0.13 TCGA-EI-6885-01 9 112195413 112195413 C T PTPN3 Missense_Mutation p.G235E 0.45 deleterious(0.02) probably_damaging(0.992) TCGA-EI-6885-01 9 134319695 134319695 G A PRRC2B Missense_Mutation p.G198E 0.43 deleterious(0) probably_damaging(1) TCGA-EI-6885-01 9 97062172 97062172 C T ZNF169 Missense_Mutation p.A111V 0.52 tolerated(1) benign(0.001) TCGA-EI-6885-01 X 100667709 100667709 G C HNRNPH2 Missense_Mutation p.D245H 0.20 tolerated(0.11) possibly_damaging(0.764) TCGA-EI-6885-01 X 107316577 107316577 C T VSIG1 Silent p.C258C 0.27 TCGA-EI-6885-01 X 140335731 140335731 G A SPANXC Silent p.H71H 0.23 TCGA-EI-6885-01 X 1428415 1428415 C T CSF2RA 3'UTR 0.09 TCGA-EI-6885-01 X 148797615 148797615 G C MAGEA11 Missense_Mutation p.V157L 0.09 tolerated(0.49) benign(0.002) TCGA-EI-6885-01 X 32536119 32536119 A G DMD Intron 0.22 TCGA-EI-6885-01 X 49019217 49019217 G A MAGIX 5'Flank 0.19 TCGA-EI-6885-01 X 77301810 77301810 G A ATP7A Missense_Mutation p.E1416K 0.44 tolerated(0.08) benign(0.035) TCGA-EI-6885-01 X 9863341 9863341 A C SHROOM2 Missense_Mutation p.S465R 0.33 deleterious(0.03) benign(0.021) TCGA-EI-6917-01 10 101148000 101148000 C T CNNM1 Silent p.F872F 0.19 TCGA-EI-6917-01 10 101157386 101157386 C T GOT1 Missense_Mutation p.R387Q 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 101163271 101163271 C T GOT1 Missense_Mutation p.R305Q 0.18 deleterious(0.01) probably_damaging(0.98) TCGA-EI-6917-01 10 101180556 101180556 C T GOT1 Missense_Mutation p.R42H 0.18 deleterious(0) probably_damaging(0.965) TCGA-EI-6917-01 10 101551996 101551996 C T ABCC2 Silent p.F71F 0.25 TCGA-EI-6917-01 10 101552081 101552081 C T ABCC2 Nonsense_Mutation p.R100* 0.27 TCGA-EI-6917-01 10 101595974 101595974 C T ABCC2 Nonsense_Mutation p.R1181* 0.22 TCGA-EI-6917-01 10 101640105 101640105 G A DNMBP Silent p.F1337F 0.35 TCGA-EI-6917-01 10 101716419 101716419 C T DNMBP Missense_Mutation p.R271Q 0.41 tolerated(0.33) benign(0.131) TCGA-EI-6917-01 10 102300416 102300416 G T HIF1AN Missense_Mutation p.D152Y 0.31 tolerated(0.05) benign(0.418) TCGA-EI-6917-01 10 102794552 102794552 G A SFXN3 Missense_Mutation p.R38Q 0.29 deleterious(0.04) possibly_damaging(0.858) TCGA-EI-6917-01 10 102850410 102850410 C T TLX1NB 5'UTR 0.26 TCGA-EI-6917-01 10 102896600 102896600 A C TLX1 Missense_Mutation p.N308T 0.16 deleterious(0.02) benign(0.347) TCGA-EI-6917-01 10 102987399 102987399 G A LBX1 Silent p.I158I 0.27 TCGA-EI-6917-01 10 103285923 103285923 C A BTRC Missense_Mutation p.S237Y 0.29 tolerated(0.13) benign(0.072) TCGA-EI-6917-01 10 103892932 103892932 G A PPRC1 Missense_Mutation p.S36N 0.23 deleterious_low_confidence(0.02) benign(0.007) TCGA-EI-6917-01 10 103901363 103901363 C T PPRC1 Missense_Mutation p.S1033L 0.25 deleterious_low_confidence(0.03) benign(0.011) TCGA-EI-6917-01 10 104018760 104018760 G A GBF1 Missense_Mutation p.R22Q 0.25 deleterious(0) probably_damaging(0.975) TCGA-EI-6917-01 10 104160150 104160150 C T NFKB2 Missense_Mutation p.A567V 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 10 104174956 104174956 G T PSD Missense_Mutation p.S263Y 0.33 deleterious(0.01) benign(0.235) TCGA-EI-6917-01 10 104183302 104183302 C T CUEDC2 Missense_Mutation p.D249N 0.29 tolerated(0.28) benign(0.006) TCGA-EI-6917-01 10 104449689 104449689 G A ARL3 Silent p.I92I 0.20 TCGA-EI-6917-01 10 104679648 104679648 T C CNNM2 Missense_Mutation p.S471P 0.29 deleterious(0) possibly_damaging(0.827) TCGA-EI-6917-01 10 104814135 104814135 T C CNNM2 Silent p.D605D 0.28 TCGA-EI-6917-01 10 105007386 105007386 A C RPEL1 3'UTR 0.25 TCGA-EI-6917-01 10 105048397 105048397 G T INA Nonsense_Mutation p.E491* 0.22 TCGA-EI-6917-01 10 105172967 105172967 G A PDCD11 Missense_Mutation p.R358Q 0.33 tolerated(0.77) benign(0.002) TCGA-EI-6917-01 10 105762964 105762964 T G SLK Silent p.T676T 0.23 TCGA-EI-6917-01 10 105767944 105767944 C T SLK Nonsense_Mutation p.R872* 0.25 TCGA-EI-6917-01 10 105768047 105768047 G A SLK Missense_Mutation p.R906H 0.26 deleterious(0.01) probably_damaging(0.957) TCGA-EI-6917-01 10 105770591 105770591 G A SLK Silent p.E934E 0.24 TCGA-EI-6917-01 10 105799264 105799264 G A COL17A1 Silent p.F945F 0.32 TCGA-EI-6917-01 10 106918670 106918670 G A SORCS3 Silent p.L550L 0.15 TCGA-EI-6917-01 10 108447961 108447961 G A SORCS1 Missense_Mutation p.H517Y 0.15 tolerated(0.18) benign(0.082) TCGA-EI-6917-01 10 108466321 108466321 C T SORCS1 Silent p.P405P 0.18 TCGA-EI-6917-01 10 1089812 1089812 G A IDI1 Intron 0.47 TCGA-EI-6917-01 10 111879263 111879263 G T ADD3 Nonsense_Mutation p.E301* 0.24 TCGA-EI-6917-01 10 112039691 112039691 G T MXI1 Missense_Mutation p.R191I 0.22 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 10 112362387 112362387 C T SMC3 Silent p.V1087V 0.25 TCGA-EI-6917-01 10 112641101 112641101 G A PDCD4 Missense_Mutation p.E52K 0.30 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 10 112764363 112764363 G T SHOC2 Splice_Site p.X325_splice 0.29 TCGA-EI-6917-01 10 112839806 112839806 C T ADRA2A 3'UTR 0.22 TCGA-EI-6917-01 10 113913351 113913351 C T GPAM Missense_Mutation p.R815Q 0.30 deleterious(0.04) possibly_damaging(0.59) TCGA-EI-6917-01 10 113920419 113920419 C T GPAM Missense_Mutation p.E568K 0.28 deleterious(0.01) possibly_damaging(0.852) TCGA-EI-6917-01 10 114925632 114925632 A G TCF7L2 Silent p.S570S 0.21 TCGA-EI-6917-01 10 11505504 11505504 C T USP6NL Missense_Mutation p.A492T 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 115373960 115373960 C T NRAP Silent p.A1094A 0.38 TCGA-EI-6917-01 10 115402714 115402714 C T NRAP Silent p.K398K 0.29 TCGA-EI-6917-01 10 115481422 115481422 G A CASP7 Missense_Mutation p.R120Q 0.14 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 10 115529640 115529640 G T PLEKHS1 Missense_Mutation p.R172I 0.33 deleterious(0.01) probably_damaging(0.953) TCGA-EI-6917-01 10 115987901 115987901 C T TDRD1 Intron 0.17 TCGA-EI-6917-01 10 116042279 116042279 A G VWA2 Missense_Mutation p.K280E 0.21 deleterious(0.03) benign(0.381) TCGA-EI-6917-01 10 116335186 116335186 A G ABLIM1 Silent p.C184C 0.17 TCGA-EI-6917-01 10 116595936 116595936 G A FAM160B1 Silent p.E151E 0.23 TCGA-EI-6917-01 10 116621011 116621011 C T FAM160B1 Nonsense_Mutation p.R704* 0.29 TCGA-EI-6917-01 10 116731930 116731930 G A TRUB1 Silent p.S211S 0.25 TCGA-EI-6917-01 10 118228733 118228733 A G PNLIPRP3 Missense_Mutation p.T322A 0.27 tolerated(0.34) benign(0.122) TCGA-EI-6917-01 10 118307932 118307932 C T PNLIP Missense_Mutation p.R88C 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-EI-6917-01 10 11911722 11911722 G A PROSER2 Missense_Mutation p.E209K 0.36 tolerated(0.07) probably_damaging(0.978) TCGA-EI-6917-01 10 12001252 12001252 G T UPF2 Missense_Mutation p.T763N 0.25 tolerated(0.45) benign(0.157) TCGA-EI-6917-01 10 120353717 120353717 C T PRLHR Missense_Mutation p.R347H 0.25 deleterious(0.03) probably_damaging(0.95) TCGA-EI-6917-01 10 120354314 120354314 G A PRLHR Missense_Mutation p.S148L 0.27 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 10 120801592 120801592 C T EIF3A Missense_Mutation p.R1147H 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-EI-6917-01 10 121212669 121212669 G A GRK5 Missense_Mutation p.E519K 0.18 tolerated(0.22) benign(0.289) TCGA-EI-6917-01 10 12175304 12175304 G T SEC61A2 Missense_Mutation p.R24S 0.25 deleterious(0.02) benign(0.104) TCGA-EI-6917-01 10 12199913 12199913 C T SEC61A2 Missense_Mutation p.R262C 0.27 deleterious(0) probably_damaging(0.937) TCGA-EI-6917-01 10 122263394 122263394 A C PPAPDC1A Missense_Mutation p.N41H 0.20 deleterious(0.02) possibly_damaging(0.735) TCGA-EI-6917-01 10 122280493 122280493 G A PPAPDC1A Missense_Mutation p.D111N 0.23 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 10 123549768 123549768 T C ATE1 Missense_Mutation p.T432A 0.21 deleterious(0.04) possibly_damaging(0.45) TCGA-EI-6917-01 10 123844926 123844926 G T TACC2 Missense_Mutation p.D971Y 0.15 possibly_damaging(0.885) TCGA-EI-6917-01 10 124013672 124013672 C T TACC2 3'UTR 0.31 TCGA-EI-6917-01 10 124152742 124152742 G A PLEKHA1 Missense_Mutation p.R9H 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-EI-6917-01 10 124248514 124248514 G A HTRA1 Missense_Mutation p.R190H 0.30 tolerated(0.56) possibly_damaging(0.581) TCGA-EI-6917-01 10 124380872 124380872 G A DMBT1 Missense_Mutation p.E1733K 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 10 124746992 124746992 C T PSTK Silent p.I340I 0.23 TCGA-EI-6917-01 10 124922348 124922348 A C BUB3 Intron 0.15 TCGA-EI-6917-01 10 125771918 125771918 G T CHST15 Missense_Mutation p.L476I 0.27 deleterious(0.01) probably_damaging(0.928) TCGA-EI-6917-01 10 125780896 125780896 G A CHST15 Missense_Mutation p.S408L 0.39 deleterious(0.02) benign(0.046) TCGA-EI-6917-01 10 126694292 126694292 G T CTBP2 Intron 0.27 TCGA-EI-6917-01 10 126714993 126714993 C T CTBP2 Missense_Mutation p.A446T 0.25 tolerated_low_confidence(0.36) benign(0.001) TCGA-EI-6917-01 10 127504755 127504755 G A UROS Silent p.F46F 0.16 TCGA-EI-6917-01 10 127727954 127727954 G T ADAM12 Missense_Mutation p.L720I 0.12 tolerated(0.09) benign(0.188) TCGA-EI-6917-01 10 127737908 127737908 G T ADAM12 Missense_Mutation p.L614M 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-EI-6917-01 10 12858263 12858263 C T CAMK1D Missense_Mutation p.R257W 0.25 deleterious(0.01) possibly_damaging(0.846) TCGA-EI-6917-01 10 128973591 128973591 C T FAM196A Missense_Mutation p.D357N 0.41 deleterious(0.03) probably_damaging(0.978) TCGA-EI-6917-01 10 128974539 128974539 G A FAM196A Missense_Mutation p.R41W 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 129537084 129537084 C A FOXI2 Missense_Mutation p.S271Y 0.19 deleterious(0.01) possibly_damaging(0.831) TCGA-EI-6917-01 10 129904458 129904458 C A MKI67 Missense_Mutation p.K1882N 0.28 tolerated(0.15) benign(0.239) TCGA-EI-6917-01 10 129905447 129905447 C T MKI67 Missense_Mutation p.A1553T 0.26 tolerated(0.26) benign(0.28) TCGA-EI-6917-01 10 129910038 129910038 C T MKI67 Missense_Mutation p.A711T 0.24 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 10 129913794 129913794 C A MKI67 Missense_Mutation p.R293I 0.17 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 10 13040505 13040505 C A CCDC3 Nonsense_Mutation p.E128* 0.22 TCGA-EI-6917-01 10 13043426 13043426 G A CCDC3 Silent p.L49L 0.29 TCGA-EI-6917-01 10 13233336 13233336 A G MCM10 Missense_Mutation p.T486A 0.28 deleterious(0.03) possibly_damaging(0.643) TCGA-EI-6917-01 10 13275593 13275593 C T UCMA Silent p.S55S 0.26 TCGA-EI-6917-01 10 133961483 133961483 C T JAKMIP3 Missense_Mutation p.R593W 0.21 deleterious(0.03) possibly_damaging(0.888) TCGA-EI-6917-01 10 134004307 134004307 C T DPYSL4 Silent p.Y32Y 0.24 TCGA-EI-6917-01 10 134598471 134598471 C T NKX6-2 Silent p.S261S 0.24 TCGA-EI-6917-01 10 134622302 134622302 G A TTC40 Missense_Mutation p.R2591W 0.38 deleterious_low_confidence(0) benign(0) TCGA-EI-6917-01 10 134731924 134731924 G A TTC40 Silent p.F653F 0.20 TCGA-EI-6917-01 10 134980981 134980981 C T KNDC1 Missense_Mutation p.R67W 0.38 deleterious(0) benign(0.14) TCGA-EI-6917-01 10 135012730 135012730 C T KNDC1 Silent p.F906F 0.50 TCGA-EI-6917-01 10 14563226 14563226 C T FAM107B Missense_Mutation p.R295K 0.37 tolerated(0.16) probably_damaging(0.987) TCGA-EI-6917-01 10 14964985 14964985 G A DCLRE1C Silent p.V352V 0.24 TCGA-EI-6917-01 10 15115213 15115213 G A OLAH Silent p.S314S 0.23 TCGA-EI-6917-01 10 15120704 15120704 C A ACBD7 Missense_Mutation p.W60L 0.36 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 15138545 15138545 C T C10orf111 Silent p.R93R 0.22 TCGA-EI-6917-01 10 15146250 15146250 A G RPP38 3'UTR 0.21 TCGA-EI-6917-01 10 15648393 15648393 G T ITGA8 Missense_Mutation p.S598Y 0.31 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 10 15821011 15821011 G A FAM188A Missense_Mutation p.R440C 0.09 tolerated(0.16) possibly_damaging(0.724) TCGA-EI-6917-01 10 15876594 15876594 C T FAM188A Missense_Mutation p.E200K 0.25 deleterious(0) probably_damaging(0.919) TCGA-EI-6917-01 10 16556481 16556481 G A C1QL3 3'UTR 0.24 TCGA-EI-6917-01 10 16635234 16635234 G T RSU1 3'UTR 0.19 TCGA-EI-6917-01 10 16911845 16911845 C A CUBN Missense_Mutation p.D3082Y 0.21 deleterious(0.03) benign(0.03) TCGA-EI-6917-01 10 17110148 17110148 C T CUBN Missense_Mutation p.E975K 0.30 tolerated(0.91) benign(0.001) TCGA-EI-6917-01 10 18550224 18550224 G A CACNB2 Intron 0.26 TCGA-EI-6917-01 10 18903417 18903417 C A NSUN6 Nonsense_Mutation p.E183* 0.26 TCGA-EI-6917-01 10 20436829 20436829 G T PLXDC2 Nonsense_Mutation p.E261* 0.25 TCGA-EI-6917-01 10 21139421 21139421 T G NEBL Missense_Mutation p.K340T 0.12 deleterious(0) probably_damaging(0.923) TCGA-EI-6917-01 10 21807507 21807507 G A SKIDA1 5'UTR 0.30 TCGA-EI-6917-01 10 21807610 21807610 C - SKIDA1 5'UTR 0.20 TCGA-EI-6917-01 10 22700026 22700026 G T SPAG6 Nonsense_Mutation p.E461* 0.12 TCGA-EI-6917-01 10 23003135 23003135 G A PIP4K2A Missense_Mutation p.L41F 0.24 tolerated(1) benign(0.002) TCGA-EI-6917-01 10 23270590 23270590 C T ARMC3 Missense_Mutation p.A379V 0.28 deleterious(0.02) possibly_damaging(0.576) TCGA-EI-6917-01 10 24832097 24832097 A C KIAA1217 Missense_Mutation p.T1300P 0.13 deleterious(0.03) benign(0.001) TCGA-EI-6917-01 10 24832382 24832382 C A KIAA1217 Missense_Mutation p.L1395I 0.19 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 10 24884970 24884970 A G ARHGAP21 Silent p.Y1160Y 0.30 TCGA-EI-6917-01 10 24909164 24909164 G A ARHGAP21 Nonsense_Mutation p.R554* 0.27 TCGA-EI-6917-01 10 24909609 24909609 A G ARHGAP21 Silent p.C405C 0.23 TCGA-EI-6917-01 10 25273117 25273117 G A ENKUR 3'UTR 0.19 TCGA-EI-6917-01 10 25464743 25464743 G A GPR158 Missense_Mutation p.A132T 0.27 tolerated(0.12) possibly_damaging(0.844) TCGA-EI-6917-01 10 25885645 25885645 G A GPR158 Missense_Mutation p.R691Q 0.20 deleterious(0) probably_damaging(0.971) TCGA-EI-6917-01 10 26310615 26310615 G A MYO3A Intron 0.12 TCGA-EI-6917-01 10 26589851 26589851 C A GAD2 Missense_Mutation p.F573L 0.22 deleterious(0) probably_damaging(0.918) TCGA-EI-6917-01 10 26825011 26825011 C A APBB1IP Missense_Mutation p.F303L 0.23 deleterious(0) probably_damaging(0.989) TCGA-EI-6917-01 10 26998667 26998667 G A PDSS1 Missense_Mutation p.R146Q 0.18 tolerated(0.11) possibly_damaging(0.853) TCGA-EI-6917-01 10 27012750 27012750 G T PDSS1 Missense_Mutation p.D209Y 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 27301826 27301826 C A ANKRD26 Missense_Mutation p.E1646D 0.20 tolerated(0.12) benign(0.024) TCGA-EI-6917-01 10 27403477 27403477 G A YME1L1 Silent p.I717I 0.10 TCGA-EI-6917-01 10 27537609 27537609 C A RP11-85G18.6 Intron 0.29 TCGA-EI-6917-01 10 27552039 27552039 G T ARMC4P1 RNA 0.23 TCGA-EI-6917-01 10 27688070 27688070 G A PTCHD3 Missense_Mutation p.A486V 0.22 tolerated(1) benign(0.162) TCGA-EI-6917-01 10 28151425 28151425 C T ARMC4 Missense_Mutation p.E913K 0.26 deleterious(0) possibly_damaging(0.834) TCGA-EI-6917-01 10 28151431 28151431 C A ARMC4 Missense_Mutation p.D911Y 0.15 deleterious(0.03) possibly_damaging(0.608) TCGA-EI-6917-01 10 28233214 28233214 C T ARMC4 Silent p.A560A 0.15 TCGA-EI-6917-01 10 28257906 28257906 C T ARMC4 Missense_Mutation p.G395E 0.15 tolerated(0.34) benign(0.008) TCGA-EI-6917-01 10 28412977 28412977 C T MPP7 Missense_Mutation p.E200K 0.14 deleterious(0) possibly_damaging(0.844) TCGA-EI-6917-01 10 28824508 28824508 G A WAC Silent p.S32S 0.21 TCGA-EI-6917-01 10 28971077 28971077 G A BAMBI Missense_Mutation p.R177Q 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-EI-6917-01 10 30318095 30318095 G T KIAA1462 Missense_Mutation p.L328I 0.15 tolerated(0.44) benign(0.44) TCGA-EI-6917-01 10 30915092 30915092 G A LYZL2 Silent p.F126F 0.19 TCGA-EI-6917-01 10 31816237 31816237 C T ZEB1 3'UTR 0.23 TCGA-EI-6917-01 10 3189442 3189442 C T PITRM1 Missense_Mutation p.V747M 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-EI-6917-01 10 32097596 32097596 G T ARHGAP12 Missense_Mutation p.L783I 0.32 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 10 32311786 32311786 C T KIF5B Missense_Mutation p.R635H 0.22 tolerated(0.05) possibly_damaging(0.53) TCGA-EI-6917-01 10 33515119 33515119 G A NRP1 Silent p.I360I 0.31 TCGA-EI-6917-01 10 34626240 34626240 G A PARD3 Silent p.F844F 0.22 TCGA-EI-6917-01 10 34759021 34759021 C T PARD3 Missense_Mutation p.D192N 0.23 deleterious(0.02) benign(0.061) TCGA-EI-6917-01 10 35299245 35299245 G A CUL2 Silent p.V763V 0.29 TCGA-EI-6917-01 10 35360133 35360133 C T CUL2 Missense_Mutation p.R57H 0.22 deleterious(0.01) benign(0.001) TCGA-EI-6917-01 10 35772403 35772403 G A CCNY Missense_Mutation p.D76N 0.25 deleterious(0.05) possibly_damaging(0.642) TCGA-EI-6917-01 10 37447450 37447450 C T ANKRD30A Silent p.C556C 0.26 TCGA-EI-6917-01 10 3824277 3824277 C T KLF6 Missense_Mutation p.E78K 0.31 tolerated(0.29) benign(0.207) TCGA-EI-6917-01 10 38343831 38343831 C A ZNF33A Nonsense_Mutation p.S260* 0.21 TCGA-EI-6917-01 10 38407119 38407119 G T ZNF37A Missense_Mutation p.R347I 0.18 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 10 42905454 42905454 C A CCNYL2 RNA 0.23 TCGA-EI-6917-01 10 42907163 42907163 C A CCNYL2 RNA 0.22 TCGA-EI-6917-01 10 43617397 43617397 C T RET Missense_Mutation p.R912W 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 43654172 43654172 G A CSGALNACT2 Missense_Mutation p.R224H 0.23 deleterious(0) probably_damaging(0.975) TCGA-EI-6917-01 10 44052666 44052666 C T ZNF239 Missense_Mutation p.E288K 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 10 44868562 44868562 G A CXCL12 3'Flank 0.21 TCGA-EI-6917-01 10 45500507 45500507 C T ZNF22 3'UTR 0.32 TCGA-EI-6917-01 10 45602124 45602124 T C RSU1P2 RNA 0.40 TCGA-EI-6917-01 10 45602610 45602610 G T RSU1P2 RNA 0.27 TCGA-EI-6917-01 10 461740 461740 G T DIP2C Missense_Mutation p.F276L 0.30 deleterious(0.02) possibly_damaging(0.501) TCGA-EI-6917-01 10 48383882 48383882 T C RBP3 Missense_Mutation p.D1117G 0.19 tolerated(0.44) possibly_damaging(0.822) TCGA-EI-6917-01 10 49414798 49414798 G T FRMPD2 Missense_Mutation p.S597Y 0.17 deleterious(0.03) benign(0.132) TCGA-EI-6917-01 10 49618104 49618104 C A MAPK8 Missense_Mutation p.L115I 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 10 49632163 49632163 G T MAPK8 Nonsense_Mutation p.E217* 0.20 TCGA-EI-6917-01 10 49654593 49654593 C A ARHGAP22 Missense_Mutation p.K662N 0.21 deleterious(0) possibly_damaging(0.697) TCGA-EI-6917-01 10 49654658 49654658 C T ARHGAP22 Missense_Mutation p.E641K 0.22 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 10 49917843 49917843 G A WDFY4 Silent p.G22G 0.27 TCGA-EI-6917-01 10 49944132 49944132 C A WDFY4 Intron 0.19 TCGA-EI-6917-01 10 50025369 50025369 G A WDFY4 Missense_Mutation p.R1807H 0.32 tolerated(1) benign(0.001) TCGA-EI-6917-01 10 50255085 50255085 C T VSTM4 Silent p.P260P 0.29 TCGA-EI-6917-01 10 50373809 50373809 A G C10orf128 Splice_Site p.X90_splice 0.21 TCGA-EI-6917-01 10 50691430 50691430 G A ERCC6 Nonsense_Mutation p.R652* 0.29 TCGA-EI-6917-01 10 50958937 50958937 C T OGDHL Missense_Mutation p.D282N 0.19 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 10 51027502 51027502 C A PARG Nonsense_Mutation p.E454* 0.19 TCGA-EI-6917-01 10 51050009 51050009 C T PARG Missense_Mutation p.R358H 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 51225502 51225502 G A AGAP8 Nonsense_Mutation p.R494* 0.15 TCGA-EI-6917-01 10 51814420 51814420 A C RP11-324H6.5 RNA 0.25 TCGA-EI-6917-01 10 51889673 51889673 G T FAM21A Missense_Mutation p.K1194N 0.25 deleterious(0.04) probably_damaging(1) TCGA-EI-6917-01 10 52390769 52390769 C T RP11-50E11.3 RNA 0.16 TCGA-EI-6917-01 10 54074791 54074791 C T DKK1 Nonsense_Mutation p.R118* 0.40 TCGA-EI-6917-01 10 5442885 5442885 C T TUBAL3 Missense_Mutation p.D57N 0.25 tolerated_low_confidence(1) benign(0.006) TCGA-EI-6917-01 10 54527964 54527964 T G MBL2 Missense_Mutation p.K227T 0.21 tolerated(0.55) benign(0.008) TCGA-EI-6917-01 10 5498571 5498571 C T NET1 Missense_Mutation p.R469C 0.32 deleterious(0.04) probably_damaging(0.987) TCGA-EI-6917-01 10 5541215 5541215 C T CALML5 Missense_Mutation p.E63K 0.32 tolerated(0.07) benign(0.053) TCGA-EI-6917-01 10 55581596 55581596 G A PCDH15 3'UTR 0.29 TCGA-EI-6917-01 10 55582141 55582141 G T PCDH15 Missense_Mutation p.S1784Y 0.31 tolerated_low_confidence(0.06) unknown(0) TCGA-EI-6917-01 10 55780079 55780079 G A PCDH15 Missense_Mutation p.S875L 0.22 tolerated(0.06) possibly_damaging(0.687) TCGA-EI-6917-01 10 55943312 55943312 G A PCDH15 Silent p.I494I 0.23 TCGA-EI-6917-01 10 56089375 56089375 A C PCDH15 Missense_Mutation p.F229C 0.25 deleterious(0.05) possibly_damaging(0.84) TCGA-EI-6917-01 10 5791130 5791130 C T FAM208B Nonsense_Mutation p.R1916* 0.39 TCGA-EI-6917-01 10 5966354 5966354 G A FBXO18 Missense_Mutation p.A878T 0.17 tolerated(0.52) possibly_damaging(0.526) TCGA-EI-6917-01 10 59956447 59956447 A C IPMK Missense_Mutation p.F214C 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 60154738 60154738 G T TFAM Missense_Mutation p.M215I 0.35 tolerated(0.56) benign(0.298) TCGA-EI-6917-01 10 60558866 60558866 T G BICC1 Missense_Mutation p.L527V 0.12 deleterious(0.04) probably_damaging(0.996) TCGA-EI-6917-01 10 6063598 6063598 G A IL2RA Silent p.F142F 0.21 TCGA-EI-6917-01 10 60994236 60994236 G T PHYHIPL Missense_Mutation p.K93N 0.14 tolerated(0.16) possibly_damaging(0.67) TCGA-EI-6917-01 10 60998464 60998464 C T PHYHIPL Nonsense_Mutation p.R199* 0.47 TCGA-EI-6917-01 10 61007238 61007238 C T FAM13C 3'UTR 0.28 TCGA-EI-6917-01 10 61023860 61023860 G A FAM13C Missense_Mutation p.R337C 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 6143245 6143245 G A RBM17 Silent p.T45T 0.17 TCGA-EI-6917-01 10 61719335 61719335 C T C10orf40 5'UTR 0.23 TCGA-EI-6917-01 10 61819111 61819111 G A ANK3 Nonsense_Mutation p.R4225* 0.24 TCGA-EI-6917-01 10 61830869 61830869 G T ANK3 Missense_Mutation p.P3257H 0.32 probably_damaging(0.996) TCGA-EI-6917-01 10 61847919 61847919 G A ANK3 Nonsense_Mutation p.R1176* 0.42 TCGA-EI-6917-01 10 61926617 61926617 G A ANK3 Missense_Mutation p.T839M 0.27 probably_damaging(0.997) TCGA-EI-6917-01 10 62648738 62648738 G A RHOBTB1 Nonsense_Mutation p.Q230* 0.48 TCGA-EI-6917-01 10 63852632 63852632 C T ARID5B Missense_Mutation p.S1137F 0.14 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 10 63944077 63944077 G T RTKN2 3'UTR 0.24 TCGA-EI-6917-01 10 64574076 64574076 A G EGR2 Missense_Mutation p.Y108H 0.28 tolerated(0.49) possibly_damaging(0.728) TCGA-EI-6917-01 10 64575793 64575793 C T EGR2 5'UTR 0.17 TCGA-EI-6917-01 10 6472834 6472834 G A PRKCQ Missense_Mutation p.R635W 0.30 tolerated(0.05) possibly_damaging(0.472) TCGA-EI-6917-01 10 64946035 64946035 C A JMJD1C Missense_Mutation p.D2227Y 0.31 deleterious(0) probably_damaging(0.927) TCGA-EI-6917-01 10 64968358 64968358 C T JMJD1C Missense_Mutation p.R1024Q 0.26 tolerated(0.35) probably_damaging(0.998) TCGA-EI-6917-01 10 64973933 64973933 C T JMJD1C Missense_Mutation p.S665N 0.19 tolerated(0.18) benign(0.003) TCGA-EI-6917-01 10 64975028 64975028 C T JMJD1C Missense_Mutation p.R337Q 0.23 tolerated(0.09) benign(0.124) TCGA-EI-6917-01 10 65369969 65369969 G A REEP3 Missense_Mutation p.R147H 0.23 tolerated(0.08) benign(0.124) TCGA-EI-6917-01 10 67748510 67748510 C T CTNNA3 Silent p.A735A 0.26 TCGA-EI-6917-01 10 68138992 68138992 G A CTNNA3 Silent p.I550I 0.27 TCGA-EI-6917-01 10 69669051 69669051 G A SIRT1 Silent p.P403P 0.20 TCGA-EI-6917-01 10 69672501 69672501 G T SIRT1 Missense_Mutation p.R543I 0.30 deleterious(0.02) benign(0.091) TCGA-EI-6917-01 10 69881755 69881755 C A MYPN Missense_Mutation p.S187Y 0.22 deleterious(0.01) possibly_damaging(0.736) TCGA-EI-6917-01 10 69935168 69935168 C T MYPN Nonsense_Mutation p.R885* 0.24 TCGA-EI-6917-01 10 70332052 70332052 G T TET1 5'UTR 0.15 TCGA-EI-6917-01 10 70333429 70333429 C T TET1 Missense_Mutation p.A445V 0.29 tolerated(0.23) benign(0.004) TCGA-EI-6917-01 10 70426835 70426835 C A TET1 Missense_Mutation p.L1499I 0.23 tolerated(0.06) benign(0.343) TCGA-EI-6917-01 10 70645939 70645939 G T STOX1 Missense_Mutation p.R796I 0.31 tolerated(0.19) benign(0.282) TCGA-EI-6917-01 10 70673159 70673159 G A DDX50 Missense_Mutation p.R257Q 0.19 tolerated(0.06) benign(0.229) TCGA-EI-6917-01 10 71154753 71154753 A C HK1 Missense_Mutation p.N760T 0.47 tolerated(0.42) benign(0.111) TCGA-EI-6917-01 10 71883199 71883199 C A AIFM2 Missense_Mutation p.D86Y 0.32 deleterious(0) probably_damaging(0.971) TCGA-EI-6917-01 10 7214523 7214523 C T SFMBT2 Silent p.R695R 0.26 TCGA-EI-6917-01 10 72509652 72509652 G A ADAMTS14 Missense_Mutation p.A783T 0.24 tolerated(0.21) benign(0.036) TCGA-EI-6917-01 10 72531153 72531153 C T TBATA Silent p.S345S 0.11 TCGA-EI-6917-01 10 72538305 72538305 G A TBATA Intron 0.29 TCGA-EI-6917-01 10 73831920 73831920 C T SPOCK2 Missense_Mutation p.R114H 0.30 tolerated(0.35) benign(0.049) TCGA-EI-6917-01 10 74995046 74995046 C T FAM149B1 Silent p.F524F 0.33 TCGA-EI-6917-01 10 75005902 75005902 C A DNAJC9 Missense_Mutation p.K118N 0.08 tolerated(0.13) benign(0.013) TCGA-EI-6917-01 10 75143364 75143364 C T ANXA7 Missense_Mutation p.D262N 0.34 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 10 75187440 75187440 C T MSS51 Missense_Mutation p.R103Q 0.31 tolerated(0.14) benign(0.007) TCGA-EI-6917-01 10 75239152 75239152 G A PPP3CB Missense_Mutation p.A70V 0.23 tolerated(0.06) benign(0.411) TCGA-EI-6917-01 10 75302791 75302791 C A USP54 Missense_Mutation p.M158I 0.28 deleterious(0.03) probably_damaging(0.985) TCGA-EI-6917-01 10 75672058 75672058 C T PLAU Silent p.F57F 0.58 TCGA-EI-6917-01 10 7608128 7608128 C T ITIH5 Missense_Mutation p.V798I 0.25 tolerated(0.19) benign(0.145) TCGA-EI-6917-01 10 77167351 77167351 G A RP11-399K21.14 5'Flank 0.19 TCGA-EI-6917-01 10 7773958 7773958 C T ITIH2 Missense_Mutation p.S549L 0.24 deleterious(0) possibly_damaging(0.631) TCGA-EI-6917-01 10 78637644 78637644 C A KCNMA1 Nonsense_Mutation p.E1038* 0.25 TCGA-EI-6917-01 10 78870096 78870096 C T KCNMA1 Silent p.E322E 0.25 TCGA-EI-6917-01 10 78944667 78944667 C A KCNMA1 Nonsense_Mutation p.E204* 0.29 TCGA-EI-6917-01 10 79397252 79397252 G T KCNMA1 Missense_Mutation p.S50Y 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.628) TCGA-EI-6917-01 10 79745841 79745841 C T POLR3A Missense_Mutation p.G993D 0.29 tolerated(0.49) benign(0.012) TCGA-EI-6917-01 10 8006695 8006695 G A TAF3 Missense_Mutation p.E408K 0.24 deleterious(0.03) possibly_damaging(0.532) TCGA-EI-6917-01 10 8093189 8093189 G T GATA3 5'Flank 0.17 TCGA-EI-6917-01 10 8100641 8100641 G A GATA3 Missense_Mutation p.M205I 0.22 tolerated(0.41) benign(0.005) TCGA-EI-6917-01 10 81113688 81113688 G A PPIF 3'UTR 0.41 TCGA-EI-6917-01 10 81272719 81272719 G A EIF5AL1 Missense_Mutation p.S105N 0.15 tolerated(0.62) benign(0.001) TCGA-EI-6917-01 10 81275134 81275134 G T EIF5AL1 3'UTR 0.31 TCGA-EI-6917-01 10 81275296 81275296 G T EIF5AL1 3'UTR 0.18 TCGA-EI-6917-01 10 81373990 81373990 G A SFTPA1 3'Flank 0.22 TCGA-EI-6917-01 10 81697865 81697865 G T SFTPD Missense_Mutation p.P291T 0.29 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 10 82034306 82034306 T C MAT1A Missense_Mutation p.N352S 0.27 deleterious(0.02) possibly_damaging(0.48) TCGA-EI-6917-01 10 82036144 82036144 G A MAT1A Silent p.I252I 0.38 TCGA-EI-6917-01 10 82280657 82280657 C T TSPAN14 3'UTR 0.17 TCGA-EI-6917-01 10 86185508 86185508 G A CCSER2 Missense_Mutation p.R576H 0.22 tolerated(0.48) probably_damaging(0.959) TCGA-EI-6917-01 10 86230167 86230167 G A CCSER2 Missense_Mutation p.E730K 0.27 deleterious(0.04) benign(0.034) TCGA-EI-6917-01 10 86237413 86237413 G A CCSER2 Missense_Mutation p.R773Q 0.28 tolerated(0.14) benign(0.028) TCGA-EI-6917-01 10 871033 871033 C T LARP4B Missense_Mutation p.E486K 0.32 tolerated(0.17) benign(0.222) TCGA-EI-6917-01 10 88227169 88227169 C T WAPAL Missense_Mutation p.R746Q 0.30 tolerated(0.16) benign(0.093) TCGA-EI-6917-01 10 88260072 88260072 T G WAPAL Missense_Mutation p.N310H 0.28 tolerated_low_confidence(0.13) benign(0.004) TCGA-EI-6917-01 10 88416962 88416962 C T OPN4 Missense_Mutation p.R101C 0.18 deleterious_low_confidence(0.04) benign(0.002) TCGA-EI-6917-01 10 88696380 88696380 C T MMRN2 3'UTR 0.31 TCGA-EI-6917-01 10 88988252 88988252 C T NUTM2A Silent p.V205V 0.11 TCGA-EI-6917-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-EI-6917-01 10 89720744 89720744 G T PTEN Nonsense_Mutation p.E299* 0.31 TCGA-EI-6917-01 10 90122340 90122340 G A RNLS Silent p.F223F 0.26 TCGA-EI-6917-01 10 90122432 90122432 G A RNLS Nonsense_Mutation p.R193* 0.33 TCGA-EI-6917-01 10 90341464 90341464 A C RNLS Missense_Mutation p.F76C 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 10 90967002 90967002 C T CH25H Silent p.G16G 0.23 TCGA-EI-6917-01 10 91143549 91143549 C T IFIT1B Missense_Mutation p.A160V 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-EI-6917-01 10 91163301 91163301 G T IFIT1 Missense_Mutation p.K423N 0.26 deleterious(0.02) benign(0.13) TCGA-EI-6917-01 10 91497373 91497373 G T KIF20B Missense_Mutation p.K885N 0.27 deleterious(0.02) benign(0.019) TCGA-EI-6917-01 10 91497559 91497559 G A KIF20B Silent p.T947T 0.58 TCGA-EI-6917-01 10 92672640 92672640 G A ANKRD1 Missense_Mutation p.R315C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.644) TCGA-EI-6917-01 10 92680764 92680764 C A ANKRD1 Missense_Mutation p.E7D 0.23 deleterious(0.01) benign(0.429) TCGA-EI-6917-01 10 93220250 93220250 C T HECTD2 Missense_Mutation p.S112L 0.32 tolerated(0.06) benign(0.047) TCGA-EI-6917-01 10 93272061 93272061 C T HECTD2 Missense_Mutation p.P751S 0.23 deleterious(0.01) probably_damaging(0.952) TCGA-EI-6917-01 10 93392797 93392797 C T PPP1R3C 5'UTR 0.17 TCGA-EI-6917-01 10 93621827 93621827 C A TNKS2 Missense_Mutation p.S1118Y 0.30 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 10 94390005 94390005 G T KIF11 Nonsense_Mutation p.E460* 0.26 TCGA-EI-6917-01 10 94405311 94405311 A C KIF11 Missense_Mutation p.E820A 0.21 tolerated(0.09) benign(0.011) TCGA-EI-6917-01 10 95121263 95121263 C T MYOF Missense_Mutation p.E974K 0.30 tolerated(1) benign(0.001) TCGA-EI-6917-01 10 95422929 95422929 G A PDE6C Missense_Mutation p.E838K 0.25 tolerated(1) benign(0.001) TCGA-EI-6917-01 10 96039752 96039752 C T PLCE1 Intron 0.42 TCGA-EI-6917-01 10 96044629 96044629 G T PLCE1 Nonsense_Mutation p.E1648* 0.22 TCGA-EI-6917-01 10 96093961 96093961 C T NOC3L Silent p.T792T 0.27 TCGA-EI-6917-01 10 96313981 96313981 G A HELLS Silent p.T84T 0.17 TCGA-EI-6917-01 10 96350213 96350213 G A HELLS Missense_Mutation p.R511Q 0.28 deleterious(0.03) benign(0.317) TCGA-EI-6917-01 10 96612577 96612577 C A CYP2C19 Missense_Mutation p.S460Y 0.26 deleterious(0) benign(0.189) TCGA-EI-6917-01 10 96707651 96707651 A C CYP2C9 Missense_Mutation p.E199D 0.24 tolerated(0.33) benign(0.002) TCGA-EI-6917-01 10 96740999 96740999 G T CYP2C9 Missense_Mutation p.D341Y 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 10 96796968 96796968 A C CYP2C8 Missense_Mutation p.L464V 0.23 deleterious(0.02) benign(0) TCGA-EI-6917-01 10 96829249 96829249 A G CYP2C8 5'UTR 0.23 TCGA-EI-6917-01 10 97684580 97684580 C T C10orf131 Silent p.S65S 0.27 TCGA-EI-6917-01 10 97919396 97919396 T G ZNF518A RNA 0.31 TCGA-EI-6917-01 10 97921888 97921888 G A ZNF518A RNA 0.23 TCGA-EI-6917-01 10 97922448 97922448 C A ZNF518A RNA 0.27 TCGA-EI-6917-01 10 97922891 97922891 C T ZNF518A RNA 0.25 TCGA-EI-6917-01 10 98087331 98087331 C T DNTT Silent p.F327F 0.55 TCGA-EI-6917-01 10 98715300 98715300 G A LCOR Missense_Mutation p.G308E 0.19 tolerated(0.06) probably_damaging(0.972) TCGA-EI-6917-01 10 98761930 98761930 C T SLIT1 Missense_Mutation p.E1451K 0.29 tolerated(0.17) benign(0.004) TCGA-EI-6917-01 10 99192182 99192182 G T PGAM1 Missense_Mutation p.K222N 0.29 tolerated(0.08) benign(0.003) TCGA-EI-6917-01 10 99213380 99213380 G T ZDHHC16 Missense_Mutation p.G217V 0.31 tolerated(0.07) benign(0.038) TCGA-EI-6917-01 10 99771091 99771091 A G CRTAC1 Missense_Mutation p.S10P 0.32 tolerated_low_confidence(0.31) benign(0.02) TCGA-EI-6917-01 10 99969543 99969543 G A R3HCC1L Missense_Mutation p.E558K 0.13 deleterious(0.02) benign(0.35) TCGA-EI-6917-01 11 100064270 100064270 G A CNTN5 Missense_Mutation p.E587K 0.19 deleterious(0) probably_damaging(0.943) TCGA-EI-6917-01 11 100665890 100665890 G A ARHGAP42 Missense_Mutation p.R102Q 0.40 tolerated(0.32) possibly_damaging(0.605) TCGA-EI-6917-01 11 100863756 100863756 C T TMEM133 3'UTR 0.19 TCGA-EI-6917-01 11 1009157 1009157 C A AP2A2 Missense_Mutation p.F826L 0.19 deleterious(0.01) possibly_damaging(0.688) TCGA-EI-6917-01 11 101344426 101344426 G A TRPC6 Missense_Mutation p.S608F 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-EI-6917-01 11 101793445 101793445 C T KIAA1377 Nonsense_Mutation p.R68* 0.28 TCGA-EI-6917-01 11 101984966 101984966 C T YAP1 Missense_Mutation p.S138F 0.25 deleterious(0) possibly_damaging(0.62) TCGA-EI-6917-01 11 102206852 102206852 G T BIRC3 Nonsense_Mutation p.E494* 0.15 TCGA-EI-6917-01 11 102650375 102650375 G T MMP10 Missense_Mutation p.F69L 0.22 deleterious(0.01) benign(0.104) TCGA-EI-6917-01 11 102668127 102668127 G A MMP1 Silent p.F70F 0.22 TCGA-EI-6917-01 11 102822868 102822868 G A MMP13 Silent p.F224F 0.31 TCGA-EI-6917-01 11 103027282 103027282 G T DYNC2H1 Missense_Mutation p.D1304Y 0.23 probably_damaging(0.998) TCGA-EI-6917-01 11 103029449 103029449 T C DYNC2H1 Silent p.L1391L 0.22 TCGA-EI-6917-01 11 103075680 103075680 G A DYNC2H1 Missense_Mutation p.S2814N 0.20 benign(0.002) TCGA-EI-6917-01 11 103082669 103082669 G T DYNC2H1 Missense_Mutation p.L2897F 0.44 probably_damaging(0.969) TCGA-EI-6917-01 11 103814213 103814213 G A PDGFD Nonsense_Mutation p.R247* 0.24 TCGA-EI-6917-01 11 103908279 103908279 G A DDI1 Missense_Mutation p.M243I 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 11 103908827 103908828 - A DDI1 3'UTR 0.13 TCGA-EI-6917-01 11 104872775 104872775 C T CASP5 Missense_Mutation p.E246K 0.13 tolerated(1) benign(0.003) TCGA-EI-6917-01 11 105009650 105009650 G A CARD18 Nonsense_Mutation p.R55* 0.39 TCGA-EI-6917-01 11 10527507 10527507 G A AMPD3 3'UTR 0.36 TCGA-EI-6917-01 11 105483155 105483155 A C GRIA4 Missense_Mutation p.N81H 0.27 tolerated(0.26) benign(0.042) TCGA-EI-6917-01 11 105758259 105758259 A G GRIA4 Silent p.G229G 0.25 TCGA-EI-6917-01 11 105775927 105775927 G A GRIA4 Missense_Mutation p.R353Q 0.39 tolerated(0.51) benign(0.044) TCGA-EI-6917-01 11 105804569 105804569 C T GRIA4 Missense_Mutation p.A723V 0.20 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 11 105836782 105836782 C T GRIA4 Intron 0.20 TCGA-EI-6917-01 11 105845044 105845044 C T GRIA4 Missense_Mutation p.T806M 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 11 105845265 105845265 G A GRIA4 Intron 0.26 TCGA-EI-6917-01 11 105923822 105923822 T C KBTBD3 Missense_Mutation p.K532E 0.26 tolerated(0.06) probably_damaging(0.972) TCGA-EI-6917-01 11 105948598 105948598 C T AASDHPPT Missense_Mutation p.A54V 0.11 tolerated(0.14) benign(0.023) TCGA-EI-6917-01 11 105950309 105950309 A C AASDHPPT Missense_Mutation p.N100T 0.22 tolerated(0.4) benign(0.001) TCGA-EI-6917-01 11 10622593 10622593 G A MRVI1 Missense_Mutation p.S630L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 106558308 106558308 G A GUCY1A2 Silent p.I753I 0.20 TCGA-EI-6917-01 11 106647171 106647171 C T GUCY1A2 Silent p.P610P 0.22 TCGA-EI-6917-01 11 10673802 10673802 C A MRVI1 Intron 0.17 TCGA-EI-6917-01 11 107832683 107832683 G A RAB39A Missense_Mutation p.R80Q 0.22 deleterious(0.01) possibly_damaging(0.886) TCGA-EI-6917-01 11 108032226 108032226 C T NPAT Missense_Mutation p.R1196Q 0.23 tolerated(0.38) benign(0.227) TCGA-EI-6917-01 11 108043499 108043499 C T NPAT Missense_Mutation p.V738I 0.39 tolerated(0.08) possibly_damaging(0.801) TCGA-EI-6917-01 11 108057285 108057285 C T NPAT Missense_Mutation p.R217K 0.30 tolerated(0.27) benign(0.019) TCGA-EI-6917-01 11 108129739 108129739 C T ATM Silent p.G801G 0.24 TCGA-EI-6917-01 11 108172385 108172385 C T ATM Nonsense_Mutation p.R1730* 0.30 TCGA-EI-6917-01 11 1082330 1082330 G A MUC2 Silent p.E595E 0.23 TCGA-EI-6917-01 11 108277824 108277824 C A C11orf65 Missense_Mutation p.G76V 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 108380369 108380369 C T EXPH5 Silent p.P1955P 0.17 TCGA-EI-6917-01 11 108385275 108385275 G A EXPH5 Missense_Mutation p.S320L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 108385508 108385508 G A EXPH5 Silent p.F242F 0.27 TCGA-EI-6917-01 11 109294649 109294649 C T C11orf87 Missense_Mutation p.A97V 0.33 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 11 1093506 1093506 G A MUC2 Silent p.T1775T 0.14 TCGA-EI-6917-01 11 110030030 110030030 G A ZC3H12C Silent p.T321T 0.28 TCGA-EI-6917-01 11 110035565 110035565 C T ZC3H12C Silent p.V585V 0.22 TCGA-EI-6917-01 11 1101014 1101014 C T MUC2 Silent p.F2471F 0.20 TCGA-EI-6917-01 11 110108305 110108305 C T RDX Missense_Mutation p.R388Q 0.25 tolerated(0.09) benign(0.248) TCGA-EI-6917-01 11 110451943 110451943 G A ARHGAP20 Missense_Mutation p.S576F 0.27 deleterious(0.03) possibly_damaging(0.723) TCGA-EI-6917-01 11 110479762 110479762 C A ARHGAP20 Missense_Mutation p.D241Y 0.25 deleterious(0) probably_damaging(0.989) TCGA-EI-6917-01 11 111711519 111711519 G A ALG9 Silent p.G173G 0.27 TCGA-EI-6917-01 11 111735947 111735947 G T ALG9 5'UTR 0.19 TCGA-EI-6917-01 11 113146132 113146132 G T NCAM1 3'UTR 0.38 TCGA-EI-6917-01 11 113650968 113650968 G A CLDN25 Missense_Mutation p.D151N 0.29 deleterious(0.03) benign(0.049) TCGA-EI-6917-01 11 113661000 113661000 G A ATF4P4 RNA 0.25 TCGA-EI-6917-01 11 113672258 113672258 G A USP28 Missense_Mutation p.A1002V 0.11 tolerated(0.05) probably_damaging(0.968) TCGA-EI-6917-01 11 113704161 113704161 C T USP28 Missense_Mutation p.R247Q 0.35 deleterious(0.02) probably_damaging(0.909) TCGA-EI-6917-01 11 113704982 113704982 G A USP28 Nonsense_Mutation p.R204* 0.22 TCGA-EI-6917-01 11 11374425 11374425 T C CSNK2A3 Missense_Mutation p.E81G 0.13 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 11400741 11400741 G A GALNT18 Silent p.V222V 0.11 TCGA-EI-6917-01 11 114183101 114183101 G A NNMT Missense_Mutation p.E233K 0.17 tolerated(0.52) benign(0.009) TCGA-EI-6917-01 11 114183152 114183152 G A NNMT Missense_Mutation p.E250K 0.22 tolerated(0.46) benign(0.007) TCGA-EI-6917-01 11 115111130 115111130 C A CADM1 Missense_Mutation p.Q45H 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 11 1156641 1156641 G A MUC5AC Missense_Mutation p.V220I 0.38 tolerated(0.12) benign(0.002) TCGA-EI-6917-01 11 117117621 117117621 G A RNF214 Missense_Mutation p.D306N 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 11 117160329 117160329 G A BACE1 Missense_Mutation p.R487C 0.32 deleterious(0) possibly_damaging(0.886) TCGA-EI-6917-01 11 117265851 117265851 C T CEP164 Missense_Mutation p.R953W 0.24 deleterious(0.04) benign(0.07) TCGA-EI-6917-01 11 118183553 118183553 G A CD3E Silent p.A108A 0.23 TCGA-EI-6917-01 11 118245634 118245634 G T UBE4A Missense_Mutation p.K387N 0.27 tolerated(0.14) probably_damaging(0.95) TCGA-EI-6917-01 11 118253482 118253482 G A UBE4A Missense_Mutation p.E737K 0.14 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 11 118343503 118343503 G A KMT2A Silent p.T543T 0.33 TCGA-EI-6917-01 11 118765320 118765320 G A CXCR5 Missense_Mutation p.R356H 0.53 deleterious(0.03) possibly_damaging(0.904) TCGA-EI-6917-01 11 118766161 118766161 T G BCL9L 3'UTR 0.29 TCGA-EI-6917-01 11 118778288 118778288 G A BCL9L Missense_Mutation p.R146C 0.26 benign(0.194) TCGA-EI-6917-01 11 118972223 118972223 T G DPAGT1 Missense_Mutation p.K48T 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 119031686 119031686 G A ABCG4 Missense_Mutation p.S604N 0.30 tolerated(0.15) benign(0) TCGA-EI-6917-01 11 119050480 119050480 C T NLRX1 Nonsense_Mutation p.R584* 0.29 TCGA-EI-6917-01 11 119057359 119057359 C T PDZD3 Missense_Mutation p.A97V 0.26 tolerated(0.07) benign(0.216) TCGA-EI-6917-01 11 119144603 119144603 C T CBL Nonsense_Mutation p.R206* 0.32 TCGA-EI-6917-01 11 119144604 119144604 G A CBL Missense_Mutation p.R206Q 0.18 tolerated(0.09) probably_damaging(0.984) TCGA-EI-6917-01 11 119145620 119145620 G A CBL Missense_Mutation p.E276K 0.15 deleterious(0.01) probably_damaging(0.923) TCGA-EI-6917-01 11 119206142 119206142 G A RNF26 Missense_Mutation p.A104T 0.25 tolerated(0.23) benign(0.178) TCGA-EI-6917-01 11 119993732 119993732 C T TRIM29 Silent p.T455T 0.22 TCGA-EI-6917-01 11 120139927 120139927 C T POU2F3 Nonsense_Mutation p.R38* 0.29 TCGA-EI-6917-01 11 120312520 120312520 G A ARHGEF12 Silent p.A399A 0.22 TCGA-EI-6917-01 11 121000473 121000473 C A TECTA Missense_Mutation p.L832I 0.30 tolerated(0.09) benign(0.016) TCGA-EI-6917-01 11 122774938 122774938 A G C11orf63 Missense_Mutation p.D217G 0.17 deleterious(0.04) possibly_damaging(0.811) TCGA-EI-6917-01 11 122805388 122805388 G A C11orf63 Silent p.S413S 0.23 TCGA-EI-6917-01 11 122852257 122852257 G A BSX Silent p.F41F 0.24 TCGA-EI-6917-01 11 122930258 122930258 T G HSPA8 Missense_Mutation p.K348T 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.849) TCGA-EI-6917-01 11 122953892 122953892 G T CLMP Missense_Mutation p.L194M 0.23 tolerated(0.15) probably_damaging(0.995) TCGA-EI-6917-01 11 12316192 12316192 A C MICALCL Missense_Mutation p.K405T 0.22 tolerated(0.08) probably_damaging(0.974) TCGA-EI-6917-01 11 12341250 12341250 G T MICALCL Missense_Mutation p.K478N 0.16 tolerated(0.09) benign(0.01) TCGA-EI-6917-01 11 124180455 124180455 C T OR8D1 Missense_Mutation p.D70N 0.22 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 11 124189908 124189908 A G OR8D2 Silent p.F62F 0.39 TCGA-EI-6917-01 11 124506863 124506863 C T SIAE Missense_Mutation p.S519N 0.20 tolerated_low_confidence(0.07) benign(0.001) TCGA-EI-6917-01 11 124747173 124747173 G A ROBO3 Silent p.P938P 0.23 TCGA-EI-6917-01 11 124824660 124824660 G A CCDC15 Missense_Mutation p.R11Q 0.35 tolerated(0.12) benign(0.22) TCGA-EI-6917-01 11 124829035 124829035 G T CCDC15 Nonsense_Mutation p.E68* 0.28 TCGA-EI-6917-01 11 124955302 124955302 G A SLC37A2 Silent p.K420K 0.21 TCGA-EI-6917-01 11 125325971 125325971 G A FEZ1 Silent p.T233T 0.27 TCGA-EI-6917-01 11 12534944 12534944 G A PARVA Intron 0.28 TCGA-EI-6917-01 11 125359358 125359358 C A FEZ1 Intron 0.33 TCGA-EI-6917-01 11 125542517 125542517 G A ACRV1 Nonsense_Mutation p.R257* 0.17 TCGA-EI-6917-01 11 125616580 125616580 G T PATE1 Missense_Mutation p.R26I 0.18 tolerated(0.25) benign(0.053) TCGA-EI-6917-01 11 1256382 1256382 G A MUC5B Missense_Mutation p.D900N 0.23 unknown(0) TCGA-EI-6917-01 11 125765162 125765162 C A PUS3 Nonsense_Mutation p.E301* 0.18 TCGA-EI-6917-01 11 125780361 125780361 C T DDX25 Nonsense_Mutation p.R204* 0.26 TCGA-EI-6917-01 11 125788530 125788530 G A DDX25 Missense_Mutation p.R349Q 0.28 tolerated(0.17) benign(0.001) TCGA-EI-6917-01 11 125873929 125873929 G A CDON Nonsense_Mutation p.R632* 0.33 TCGA-EI-6917-01 11 1268459 1268459 C A MUC5B Missense_Mutation p.T3450N 0.30 unknown(0) TCGA-EI-6917-01 11 1270339 1270339 G A MUC5B Missense_Mutation p.E4077K 0.11 unknown(0) TCGA-EI-6917-01 11 1272555 1272555 G A MUC5B Silent p.T4815T 0.44 TCGA-EI-6917-01 11 128360427 128360427 C A ETS1 Nonsense_Mutation p.E87* 0.30 TCGA-EI-6917-01 11 128843996 128843996 G T ARHGAP32 Intron 0.25 TCGA-EI-6917-01 11 128844389 128844389 G A ARHGAP32 Silent p.V887V 0.27 TCGA-EI-6917-01 11 128848721 128848721 C T ARHGAP32 Missense_Mutation p.R675Q 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-EI-6917-01 11 128868321 128868321 A G ARHGAP32 Missense_Mutation p.F349S 0.21 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 11 129034251 129034251 C T ARHGAP32 Missense_Mutation p.R63Q 0.18 deleterious(0) possibly_damaging(0.784) TCGA-EI-6917-01 11 13397169 13397169 G A ARNTL Silent p.T394T 0.27 TCGA-EI-6917-01 11 134014230 134014230 C T JAM3 Silent p.V117V 0.24 TCGA-EI-6917-01 11 134073048 134073048 C A NCAPD3 Missense_Mutation p.R505I 0.24 tolerated(0.33) benign(0.002) TCGA-EI-6917-01 11 134118827 134118827 C A THYN1 Missense_Mutation p.M169I 0.29 tolerated(0.12) benign(0.055) TCGA-EI-6917-01 11 134158716 134158716 G A GLB1L3 Missense_Mutation p.A221T 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 11 14157106 14157106 C T RNA5SP332 3'Flank 0.29 TCGA-EI-6917-01 11 14502619 14502619 C T COPB1 Missense_Mutation p.V328I 0.28 tolerated(0.19) possibly_damaging(0.609) TCGA-EI-6917-01 11 14515315 14515315 G A COPB1 Missense_Mutation p.R122C 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 16256163 16256163 C A SOX6 Missense_Mutation p.R167I 0.21 tolerated(0.09) possibly_damaging(0.776) TCGA-EI-6917-01 11 17491762 17491762 C T ABCC8 Missense_Mutation p.E100K 0.24 tolerated(0.72) benign(0.015) TCGA-EI-6917-01 11 17803238 17803238 T A KCNC1 Missense_Mutation p.V572D 0.16 deleterious_low_confidence(0) benign(0.017) TCGA-EI-6917-01 11 18042519 18042519 C T TPH1 3'UTR 0.23 TCGA-EI-6917-01 11 18118325 18118325 C T SAAL1 Missense_Mutation p.R109Q 0.17 deleterious(0) possibly_damaging(0.799) TCGA-EI-6917-01 11 18159234 18159234 A G MRGPRX3 Missense_Mutation p.D162G 0.29 tolerated(1) benign(0.002) TCGA-EI-6917-01 11 18231470 18231470 C T RP11-113D6.10 Nonsense_Mutation p.R86* 0.30 TCGA-EI-6917-01 11 18254027 18254027 T G SAA4 Missense_Mutation p.N49H 0.21 tolerated(0.09) benign(0.066) TCGA-EI-6917-01 11 18313027 18313027 C A HPS5 Missense_Mutation p.S801I 0.21 tolerated(0.44) benign(0.018) TCGA-EI-6917-01 11 18339393 18339393 G A HPS5 Missense_Mutation p.P5S 0.31 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-EI-6917-01 11 18478316 18478316 C T LDHAL6A Missense_Mutation p.S30L 0.12 tolerated(0.22) benign(0.015) TCGA-EI-6917-01 11 18587999 18587999 C T UEVLD Missense_Mutation p.E130K 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 18631236 18631236 A C SPTY2D1 3'UTR 0.40 TCGA-EI-6917-01 11 18633867 18633867 C T SPTY2D1 Missense_Mutation p.R627Q 0.22 deleterious(0) probably_damaging(0.941) TCGA-EI-6917-01 11 18955385 18955385 G A MRGPRX1 Missense_Mutation p.S316L 0.29 deleterious(0.02) benign(0.082) TCGA-EI-6917-01 11 19890477 19890477 A C NAV2 Missense_Mutation p.N149H 0.18 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 20065649 20065649 G A NAV2 Silent p.R1033R 0.09 TCGA-EI-6917-01 11 20417360 20417360 C A PRMT3 Missense_Mutation p.L138I 0.26 possibly_damaging(0.743) TCGA-EI-6917-01 11 20473726 20473726 G T PRMT3 Missense_Mutation p.K348N 0.25 benign(0.231) TCGA-EI-6917-01 11 20658721 20658721 G A SLC6A5 Missense_Mutation p.A581T 0.24 tolerated(0.13) possibly_damaging(0.521) TCGA-EI-6917-01 11 20673904 20673904 T C SLC6A5 Missense_Mutation p.S714P 0.18 deleterious(0.03) benign(0.427) TCGA-EI-6917-01 11 20869165 20869165 G A NELL1 Silent p.E124E 0.22 TCGA-EI-6917-01 11 2185558 2185558 C T TH Missense_Mutation p.D498N 0.29 deleterious(0.02) benign(0.069) TCGA-EI-6917-01 11 22360003 22360003 G T SLC17A6 5'UTR 0.31 TCGA-EI-6917-01 11 26584689 26584689 C T MUC15 Missense_Mutation p.R300Q 0.33 deleterious(0) possibly_damaging(0.776) TCGA-EI-6917-01 11 27017247 27017247 A G FIBIN 3'UTR 0.24 TCGA-EI-6917-01 11 27017927 27017927 C A FIBIN 3'UTR 0.25 TCGA-EI-6917-01 11 27679880 27679880 G A BDNF Missense_Mutation p.R160W 0.15 deleterious(0.01) possibly_damaging(0.738) TCGA-EI-6917-01 11 281403 281403 C T NLRP6 Missense_Mutation p.R557C 0.28 tolerated(0.05) benign(0.006) TCGA-EI-6917-01 11 2981106 2981106 C T NAP1L4 Missense_Mutation p.D214N 0.25 deleterious(0.04) possibly_damaging(0.71) TCGA-EI-6917-01 11 30032345 30032345 C A KCNA4 Missense_Mutation p.E627D 0.27 tolerated_low_confidence(0.53) benign(0.033) TCGA-EI-6917-01 11 3022407 3022407 G A CARS Silent p.F811F 0.30 TCGA-EI-6917-01 11 30932922 30932922 A C DCDC1 Silent p.S1233S 0.27 TCGA-EI-6917-01 11 31436427 31436427 G A DNAJC24 Missense_Mutation p.E61K 0.20 tolerated(0.08) probably_damaging(0.942) TCGA-EI-6917-01 11 32635493 32635493 C A CCDC73 Missense_Mutation p.D791Y 0.37 deleterious(0.03) benign(0.082) TCGA-EI-6917-01 11 32636030 32636030 C A CCDC73 Nonsense_Mutation p.E612* 0.21 TCGA-EI-6917-01 11 33596370 33596370 C A KIAA1549L Silent p.S1154S 0.23 TCGA-EI-6917-01 11 33731732 33731732 C A CD59 Missense_Mutation p.E109D 0.19 tolerated(0.17) benign(0.004) TCGA-EI-6917-01 11 34120908 34120908 G T CAPRIN1 Silent p.V708V 0.24 TCGA-EI-6917-01 11 35287018 35287018 A G SLC1A2 Intron 0.28 TCGA-EI-6917-01 11 35308426 35308426 G A SLC1A2 Silent p.F388F 0.13 TCGA-EI-6917-01 11 35456163 35456163 T C PAMR1 Missense_Mutation p.D525G 0.33 tolerated(0.06) benign(0.019) TCGA-EI-6917-01 11 35641984 35641984 C A FJX1 3'UTR 0.15 TCGA-EI-6917-01 11 35642211 35642211 G A FJX1 3'UTR 0.23 TCGA-EI-6917-01 11 35685255 35685255 T C TRIM44 Missense_Mutation p.V199A 0.24 deleterious(0.03) unknown(0) TCGA-EI-6917-01 11 35685308 35685308 G A TRIM44 Missense_Mutation p.E217K 0.24 deleterious(0) unknown(0) TCGA-EI-6917-01 11 36595177 36595177 G A RAG1 Missense_Mutation p.R108Q 0.27 tolerated_low_confidence(0.8) benign(0.001) TCGA-EI-6917-01 11 36595510 36595510 G A RAG1 Missense_Mutation p.R219Q 0.38 tolerated_low_confidence(0.22) benign(0) TCGA-EI-6917-01 11 36600072 36600072 T G RAG1 3'UTR 0.25 TCGA-EI-6917-01 11 36615301 36615301 G T RAG2 Missense_Mutation p.H140N 0.22 deleterious(0) probably_damaging(0.954) TCGA-EI-6917-01 11 3704547 3704547 C T NUP98 Missense_Mutation p.E1601K 0.20 tolerated(0.1) probably_damaging(0.996) TCGA-EI-6917-01 11 4388942 4388942 C T OR52B4 Missense_Mutation p.R195Q 0.25 tolerated(0.22) benign(0.056) TCGA-EI-6917-01 11 43923092 43923092 G A ALKBH3 Silent p.K162K 0.17 TCGA-EI-6917-01 11 4411408 4411408 C A TRIM21 Nonsense_Mutation p.E78* 0.18 TCGA-EI-6917-01 11 44289105 44289105 C T ALX4 Missense_Mutation p.R282Q 0.18 deleterious(0.02) probably_damaging(0.953) TCGA-EI-6917-01 11 44948254 44948254 C T TSPAN18 Silent p.F215F 0.25 TCGA-EI-6917-01 11 45925562 45925562 G A MAPK8IP1 Missense_Mutation p.E506K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 4592700 4592700 G A C11orf40 Missense_Mutation p.R203C 0.25 tolerated_low_confidence(0.08) possibly_damaging(0.835) TCGA-EI-6917-01 11 45955349 45955349 T C PHF21A 3'UTR 0.52 TCGA-EI-6917-01 11 45975166 45975166 G T PHF21A Missense_Mutation p.S335Y 0.25 tolerated(0.07) benign(0.304) TCGA-EI-6917-01 11 46398089 46398089 G A DGKZ Missense_Mutation p.R914H 0.26 tolerated(0.06) benign(0.104) TCGA-EI-6917-01 11 46564891 46564891 G A AMBRA1 Missense_Mutation p.R226C 0.47 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EI-6917-01 11 46831358 46831358 G A CKAP5 Missense_Mutation p.R233C 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 47259700 47259700 C A DDB2 Missense_Mutation p.F400L 0.30 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 11 47348331 47348331 C T MADD Nonsense_Mutation p.R1589* 0.27 TCGA-EI-6917-01 11 47360181 47360181 C T MYBPC3 Missense_Mutation p.R733H 0.27 tolerated(0.99) benign(0.007) TCGA-EI-6917-01 11 47688458 47688458 C T AGBL2 Intron 0.50 TCGA-EI-6917-01 11 47707481 47707481 G T AGBL2 Silent p.V584V 0.25 TCGA-EI-6917-01 11 47741514 47741514 C T FNBP4 Missense_Mutation p.R977Q 0.21 deleterious(0.03) possibly_damaging(0.9) TCGA-EI-6917-01 11 47746263 47746263 G T FNBP4 Missense_Mutation p.F692L 0.33 tolerated(0.34) benign(0.021) TCGA-EI-6917-01 11 48171669 48171669 G A PTPRJ Silent p.E1024E 0.25 TCGA-EI-6917-01 11 48511103 48511103 T G OR4A47 Missense_Mutation p.I253M 0.29 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-EI-6917-01 11 4944910 4944910 G A OR51G1 Silent p.Y220Y 0.24 TCGA-EI-6917-01 11 49974807 49974807 C A OR4C13 Missense_Mutation p.S278Y 0.29 deleterious_low_confidence(0) benign(0.393) TCGA-EI-6917-01 11 51516135 51516135 A G OR4C46 Missense_Mutation p.Y285C 0.29 deleterious_low_confidence(0.02) benign(0.242) TCGA-EI-6917-01 11 5153189 5153189 G A OR52A5 Silent p.V228V 0.16 TCGA-EI-6917-01 11 5153199 5153199 A C OR52A5 Missense_Mutation p.F225C 0.12 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 11 5253961 5253961 C T HBD 3'Flank 0.19 TCGA-EI-6917-01 11 5322460 5322460 G A OR51B4 Silent p.V239V 0.37 TCGA-EI-6917-01 11 5373333 5373333 T C OR51B6 Missense_Mutation p.V199A 0.20 tolerated(0.46) benign(0.008) TCGA-EI-6917-01 11 5411127 5411127 G A OR51M1 Missense_Mutation p.A167T 0.12 tolerated(0.44) benign(0.01) TCGA-EI-6917-01 11 5443678 5443678 T C OR51Q1 Missense_Mutation p.V83A 0.29 deleterious(0.01) benign(0.018) TCGA-EI-6917-01 11 5444111 5444111 C A OR51Q1 Silent p.I227I 0.35 TCGA-EI-6917-01 11 55681618 55681618 C T OR5W2 Silent p.G147G 0.23 TCGA-EI-6917-01 11 55703345 55703345 G T OR5I1 Missense_Mutation p.H178N 0.11 deleterious(0) possibly_damaging(0.5) TCGA-EI-6917-01 11 55735663 55735663 A G OR10AG1 Missense_Mutation p.C93R 0.21 deleterious(0.01) possibly_damaging(0.776) TCGA-EI-6917-01 11 55761516 55761516 C T OR5F1 Missense_Mutation p.E196K 0.23 deleterious(0.04) probably_damaging(0.979) TCGA-EI-6917-01 11 55761849 55761849 A C OR5F1 Missense_Mutation p.L85V 0.24 deleterious(0.01) benign(0.291) TCGA-EI-6917-01 11 55798141 55798141 G A OR5AS1 Missense_Mutation p.A83T 0.28 tolerated(0.06) benign(0.055) TCGA-EI-6917-01 11 55798699 55798699 G T OR5AS1 Missense_Mutation p.D269Y 0.26 deleterious(0) probably_damaging(0.917) TCGA-EI-6917-01 11 55872560 55872560 C T OR8H2 Silent p.I14I 0.22 TCGA-EI-6917-01 11 55872770 55872770 G A OR8H2 Silent p.A84A 0.28 TCGA-EI-6917-01 11 55889974 55889974 G A OR8H3 Silent p.G42G 0.19 TCGA-EI-6917-01 11 55904249 55904249 A G OR8J3 Nonstop_Mutation p.*316Qext*? 0.19 TCGA-EI-6917-01 11 56019690 56019690 C A OR5T3 Missense_Mutation p.F5L 0.19 tolerated_low_confidence(0.07) benign(0.001) TCGA-EI-6917-01 11 56020454 56020454 C T OR5T3 Missense_Mutation p.S260F 0.29 deleterious(0) probably_damaging(0.947) TCGA-EI-6917-01 11 56085969 56085969 C T OR8K3 Missense_Mutation p.L63F 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.69) TCGA-EI-6917-01 11 56086684 56086684 G A OR8K3 Missense_Mutation p.R301Q 0.37 tolerated_low_confidence(0.69) benign(0.002) TCGA-EI-6917-01 11 56128040 56128040 C A OR8J1 Missense_Mutation p.F106L 0.27 tolerated(0.44) benign(0.001) TCGA-EI-6917-01 11 56128379 56128379 C A OR8J1 Missense_Mutation p.F219L 0.11 tolerated(1) benign(0.068) TCGA-EI-6917-01 11 56310488 56310488 C T OR5M11 Silent p.S82S 0.17 TCGA-EI-6917-01 11 56380712 56380712 C T OR5M1 Silent p.Q89Q 0.22 TCGA-EI-6917-01 11 56380880 56380880 C T OR5M1 Silent p.A33A 0.23 TCGA-EI-6917-01 11 56468351 56468351 T C OR9G1 Missense_Mutation p.F163S 0.13 deleterious(0.01) possibly_damaging(0.859) TCGA-EI-6917-01 11 56511094 56511094 C T OR9G4 Missense_Mutation p.R65Q 0.30 tolerated(0.31) benign(0.004) TCGA-EI-6917-01 11 56511168 56511168 C T OR9G4 Silent p.P40P 0.38 TCGA-EI-6917-01 11 56756650 56756650 G T OR5AK2 Nonsense_Mutation p.E88* 0.30 TCGA-EI-6917-01 11 5687250 5687250 G A TRIM5 Nonsense_Mutation p.R277* 0.20 TCGA-EI-6917-01 11 57114103 57114103 C T P2RX3 Missense_Mutation p.L69F 0.19 tolerated(0.74) benign(0.002) TCGA-EI-6917-01 11 57117278 57117278 G A P2RX3 Missense_Mutation p.R204H 0.16 tolerated(0.18) benign(0.022) TCGA-EI-6917-01 11 57182167 57182167 G A SLC43A3 Silent p.F327F 0.27 TCGA-EI-6917-01 11 5730416 5730416 C T TRIM22 Silent p.F345F 0.23 TCGA-EI-6917-01 11 57512342 57512342 G A BTBD18 Missense_Mutation p.A468V 0.17 tolerated(0.09) benign(0.015) TCGA-EI-6917-01 11 57577603 57577603 C T CTNND1 Nonsense_Mutation p.R820* 0.21 TCGA-EI-6917-01 11 5776726 5776726 C T OR52N4 Silent p.F252F 0.19 TCGA-EI-6917-01 11 57983160 57983160 G A OR1S1 Missense_Mutation p.R315K 0.24 tolerated(0.2) benign(0.011) TCGA-EI-6917-01 11 58477392 58477392 G T GLYAT Silent p.V246V 0.24 TCGA-EI-6917-01 11 58478199 58478199 G T GLYAT Missense_Mutation p.L118I 0.30 tolerated(0.26) benign(0.327) TCGA-EI-6917-01 11 58601914 58601914 C A GLYATL2 Missense_Mutation p.K291N 0.39 tolerated(0.2) benign(0.278) TCGA-EI-6917-01 11 58602013 58602013 G T GLYATL2 Missense_Mutation p.F258L 0.25 tolerated(0.75) benign(0.001) TCGA-EI-6917-01 11 5905834 5905834 C A OR52E4 Missense_Mutation p.F104L 0.29 deleterious(0.02) possibly_damaging(0.624) TCGA-EI-6917-01 11 59210928 59210928 C A OR5A1 Nonsense_Mutation p.S96* 0.22 TCGA-EI-6917-01 11 59633897 59633897 G T TCN1 Missense_Mutation p.S16Y 0.37 tolerated(0.18) possibly_damaging(0.883) TCGA-EI-6917-01 11 60102467 60102467 G A MS4A6E Silent p.G33G 0.28 TCGA-EI-6917-01 11 60183406 60183406 C T MS4A14 Missense_Mutation p.S355F 0.37 deleterious(0.02) probably_damaging(0.922) TCGA-EI-6917-01 11 60183816 60183816 G T MS4A14 Missense_Mutation p.D492Y 0.22 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 11 60215171 60215171 C A MS4A5 Missense_Mutation p.S181Y 0.10 deleterious(0) probably_damaging(0.968) TCGA-EI-6917-01 11 6048098 6048098 G A OR56A1 Silent p.I279I 0.23 TCGA-EI-6917-01 11 60531206 60531206 G A MS4A15 5'UTR 0.21 TCGA-EI-6917-01 11 60609801 60609801 A T CCDC86 Silent p.G68G 0.43 TCGA-EI-6917-01 11 61089810 61089810 G A DDB1 Silent p.V360V 0.19 TCGA-EI-6917-01 11 6129824 6129824 G T OR56B4 Missense_Mutation p.K272N 0.24 tolerated(0.45) benign(0.053) TCGA-EI-6917-01 11 61646236 61646236 G A FADS3 Silent p.F202F 0.15 TCGA-EI-6917-01 11 61959614 61959614 A G SCGB1D1 Missense_Mutation p.K48E 0.26 tolerated(0.06) benign(0.33) TCGA-EI-6917-01 11 6232257 6232257 C T C11orf42 Silent p.F329F 0.12 TCGA-EI-6917-01 11 62381856 62381856 C T ROM1 Silent p.F239F 0.26 TCGA-EI-6917-01 11 62400073 62400073 C A GANAB Missense_Mutation p.E342D 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 11 62444348 62444348 G T UBXN1 Missense_Mutation p.L261I 0.33 tolerated(0.17) benign(0.125) TCGA-EI-6917-01 11 62569733 62569733 C T NXF1 Splice_Site p.X124_splice 0.33 TCGA-EI-6917-01 11 62752158 62752158 G A SLC22A6 Missense_Mutation p.A2V 0.26 deleterious(0.01) possibly_damaging(0.507) TCGA-EI-6917-01 11 62848518 62848518 G A SLC22A24 Missense_Mutation p.A491V 0.24 tolerated(1) benign(0.008) TCGA-EI-6917-01 11 62863519 62863519 A C SLC22A24 Missense_Mutation p.F338L 0.25 tolerated(0.67) benign(0.003) TCGA-EI-6917-01 11 6292088 6292088 C T CCKBR Intron 0.10 TCGA-EI-6917-01 11 63357833 63357833 G A PLA2G16 Silent p.V42V 0.32 TCGA-EI-6917-01 11 6432035 6432035 C T APBB1 Silent p.E181E 0.30 TCGA-EI-6917-01 11 64502647 64502647 T G RASGRP2 Missense_Mutation p.E450A 0.30 deleterious(0) probably_damaging(0.971) TCGA-EI-6917-01 11 64594255 64594255 C A CDC42BPG Missense_Mutation p.E1467D 0.33 tolerated(0.1) benign(0.055) TCGA-EI-6917-01 11 64785894 64785894 G A ARL2 Missense_Mutation p.D42N 0.14 tolerated(0.47) benign(0.004) TCGA-EI-6917-01 11 65062058 65062058 C T POLA2 Silent p.N465N 0.21 TCGA-EI-6917-01 11 65124738 65124738 C T TIGD3 3'UTR 0.19 TCGA-EI-6917-01 11 6532651 6532651 C T DNHD1 Missense_Mutation p.L462F 0.13 benign(0.049) TCGA-EI-6917-01 11 65488318 65488318 G A RNASEH2C 5'UTR 0.25 TCGA-EI-6917-01 11 65546651 65546651 C T AP5B1 Missense_Mutation p.R438Q 0.21 tolerated(0.82) benign(0.001) TCGA-EI-6917-01 11 6561128 6561128 G A DNHD1 Missense_Mutation p.R1148Q 0.33 benign(0.408) TCGA-EI-6917-01 11 65617942 65617942 G A SNX32 Missense_Mutation p.E139K 0.40 deleterious(0.02) possibly_damaging(0.515) TCGA-EI-6917-01 11 65780381 65780381 G A CST6 Missense_Mutation p.D109N 0.21 tolerated(0.11) benign(0.088) TCGA-EI-6917-01 11 65784267 65784267 G A CATSPER1 3'UTR 0.24 TCGA-EI-6917-01 11 65793411 65793411 G T CATSPER1 Missense_Mutation p.S147Y 0.17 deleterious(0.02) benign(0.373) TCGA-EI-6917-01 11 66113586 66113586 C A B3GNT1 Missense_Mutation p.K394N 0.28 deleterious(0.02) possibly_damaging(0.736) TCGA-EI-6917-01 11 66190358 66190358 C T NPAS4 Missense_Mutation p.A215V 0.44 tolerated(0.08) possibly_damaging(0.841) TCGA-EI-6917-01 11 66190637 66190637 A G NPAS4 Missense_Mutation p.K248E 0.19 deleterious(0.02) possibly_damaging(0.681) TCGA-EI-6917-01 11 66191412 66191412 C A NPAS4 Missense_Mutation p.L351I 0.29 tolerated(0.2) benign(0.018) TCGA-EI-6917-01 11 66191660 66191660 C T NPAS4 Silent p.G433G 0.21 TCGA-EI-6917-01 11 66299551 66299551 G T BBS1 3'UTR 0.36 TCGA-EI-6917-01 11 66321577 66321577 C T CTD-3074O7.2 3'Flank 0.30 TCGA-EI-6917-01 11 66392884 66392884 G A RBM14 Missense_Mutation p.A513T 0.31 tolerated(0.75) unknown(0) TCGA-EI-6917-01 11 66410927 66410927 G A RBM14-RBM4 Missense_Mutation p.R115Q 0.15 deleterious(0.05) possibly_damaging(0.459) TCGA-EI-6917-01 11 6652592 6652592 G A DCHS1 Missense_Mutation p.A1241V 0.32 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 11 6661412 6661412 C T DCHS1 Missense_Mutation p.R478Q 0.42 tolerated(0.32) benign(0.001) TCGA-EI-6917-01 11 6662587 6662587 G A DCHS1 Silent p.S86S 0.27 TCGA-EI-6917-01 11 67120206 67120206 C T POLD4 Nonsense_Mutation p.W85* 0.21 TCGA-EI-6917-01 11 67432974 67432974 C A ALDH3B2 Missense_Mutation p.C163F 0.11 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 11 67848900 67848900 C T CHKA Missense_Mutation p.E163K 0.25 tolerated(0.46) benign(0.265) TCGA-EI-6917-01 11 67925220 67925220 C A SUV420H1 Missense_Mutation p.D865Y 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 11 68305348 68305348 G T PPP6R3 Missense_Mutation p.K72N 0.26 deleterious(0) benign(0.197) TCGA-EI-6917-01 11 68704274 68704274 A G IGHMBP2 Missense_Mutation p.K776E 0.32 tolerated(0.24) benign(0.084) TCGA-EI-6917-01 11 68853208 68853208 C T TPCN2 Silent p.F636F 0.21 TCGA-EI-6917-01 11 6953768 6953768 G T ZNF215 Nonsense_Mutation p.E89* 0.28 TCGA-EI-6917-01 11 69625457 69625457 G A FGF3 Silent p.S112S 0.28 TCGA-EI-6917-01 11 69631101 69631101 C T FGF3 Missense_Mutation p.R104Q 0.21 deleterious(0.05) possibly_damaging(0.642) TCGA-EI-6917-01 11 70178080 70178080 C A PPFIA1 Missense_Mutation p.N364K 0.18 tolerated(0.32) benign(0.419) TCGA-EI-6917-01 11 7060006 7060006 G T NLRP14 Missense_Mutation p.K63N 0.27 tolerated(1) benign(0.004) TCGA-EI-6917-01 11 7079551 7079551 C A NLRP14 Missense_Mutation p.L835I 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6917-01 11 71906434 71906434 C A FOLR1 Nonsense_Mutation p.C96* 0.18 TCGA-EI-6917-01 11 71932241 71932241 G T FOLR2 Nonsense_Mutation p.E121* 0.25 TCGA-EI-6917-01 11 72289543 72289543 C A PDE2A Nonsense_Mutation p.E829* 0.19 TCGA-EI-6917-01 11 72302344 72302344 C T PDE2A Silent p.K182K 0.17 TCGA-EI-6917-01 11 72421498 72421498 G A ARAP1 Missense_Mutation p.R450C 0.17 deleterious(0) possibly_damaging(0.677) TCGA-EI-6917-01 11 73627628 73627628 T C PAAF1 Silent p.C286C 0.30 TCGA-EI-6917-01 11 73933406 73933406 G A PPME1 Missense_Mutation p.R113Q 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 11 74047643 74047643 C A PGM2L1 3'UTR 0.29 TCGA-EI-6917-01 11 74340330 74340330 G T POLD3 Missense_Mutation p.R323I 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 11 74546684 74546684 G A RNF169 Missense_Mutation p.E346K 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6917-01 11 74562191 74562191 C T XRRA1 Missense_Mutation p.R433Q 0.23 deleterious(0) probably_damaging(0.922) TCGA-EI-6917-01 11 74676968 74676968 C A SPCS2 Missense_Mutation p.S120Y 0.20 deleterious(0.03) probably_damaging(0.995) TCGA-EI-6917-01 11 74977080 74977080 C T ARRB1 3'UTR 0.21 TCGA-EI-6917-01 11 7509544 7509544 C T OLFML1 Nonsense_Mutation p.R106* 0.27 TCGA-EI-6917-01 11 75168759 75168759 G A GDPD5 Silent p.F98F 0.28 TCGA-EI-6917-01 11 7570729 7570729 C T PPFIBP2 Missense_Mutation p.A8V 0.22 tolerated(0.06) benign(0.001) TCGA-EI-6917-01 11 75852286 75852286 C T UVRAG Silent p.F643F 0.31 TCGA-EI-6917-01 11 76063028 76063028 G T PRKRIR Missense_Mutation p.S389Y 0.25 tolerated(0.69) benign(0.27) TCGA-EI-6917-01 11 76701587 76701587 A G ACER3 Missense_Mutation p.Y136C 0.36 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 11 76709843 76709843 C T ACER3 Nonsense_Mutation p.R159* 0.22 TCGA-EI-6917-01 11 76922934 76922934 G A MYO7A Silent p.K2102K 0.31 TCGA-EI-6917-01 11 77409717 77409717 G A RSF1 Nonsense_Mutation p.R844* 0.30 TCGA-EI-6917-01 11 77412018 77412018 A G RSF1 Silent p.V752V 0.21 TCGA-EI-6917-01 11 77475660 77475660 C T RSF1 Missense_Mutation p.E88K 0.23 deleterious(0) benign(0.012) TCGA-EI-6917-01 11 77823794 77823794 G A ALG8 Missense_Mutation p.S267F 0.24 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 11 77825000 77825000 G A ALG8 Missense_Mutation p.R237C 0.17 deleterious(0) possibly_damaging(0.496) TCGA-EI-6917-01 11 77910556 77910556 G T USP35 Intron 0.31 TCGA-EI-6917-01 11 77919947 77919947 G A USP35 Silent p.T510T 0.28 TCGA-EI-6917-01 11 78412977 78412977 G A TENM4 Missense_Mutation p.R1561W 0.23 deleterious(0) possibly_damaging(0.886) TCGA-EI-6917-01 11 7960988 7960988 A T OR10A3 Missense_Mutation p.L27H 0.24 deleterious(0) possibly_damaging(0.839) TCGA-EI-6917-01 11 82879677 82879677 A C PCF11 Missense_Mutation p.K767T 0.37 tolerated(0.33) benign(0.005) TCGA-EI-6917-01 11 82880280 82880280 G T PCF11 Missense_Mutation p.R968I 0.25 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 11 82880655 82880655 G T PCF11 Missense_Mutation p.R1093I 0.28 deleterious(0.01) probably_damaging(0.972) TCGA-EI-6917-01 11 82895848 82895848 G A PCF11 Missense_Mutation p.R1527Q 0.17 tolerated(0.74) benign(0) TCGA-EI-6917-01 11 82951862 82951862 G A ANKRD42 Missense_Mutation p.E333K 0.31 deleterious(0.03) benign(0.269) TCGA-EI-6917-01 11 82976919 82976919 G A CCDC90B Missense_Mutation p.R233C 0.23 tolerated(0.05) benign(0.262) TCGA-EI-6917-01 11 8496557 8496557 C T STK33 5'UTR 0.55 TCGA-EI-6917-01 11 85627215 85627215 G A CCDC83 Missense_Mutation p.G371D 0.27 tolerated(0.23) benign(0.001) TCGA-EI-6917-01 11 86103709 86103709 A C CCDC81 Missense_Mutation p.Q142P 0.26 tolerated(0.07) benign(0.029) TCGA-EI-6917-01 11 8639520 8639520 G A TRIM66 Missense_Mutation p.R1237C 0.22 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 11 86521464 86521464 G A PRSS23 3'UTR 0.12 TCGA-EI-6917-01 11 8739357 8739357 C A ST5 Missense_Mutation p.E520D 0.26 tolerated(0.33) benign(0.022) TCGA-EI-6917-01 11 87883056 87883056 G A RAB38 Silent p.F90F 0.20 TCGA-EI-6917-01 11 89391881 89391881 C T FOLH1B 5'Flank 0.45 TCGA-EI-6917-01 11 89447534 89447534 G T TRIM77 Nonsense_Mutation p.E228* 0.29 TCGA-EI-6917-01 11 89448348 89448348 G T TRIM77 Missense_Mutation p.R254M 0.19 deleterious(0) probably_damaging(0.957) TCGA-EI-6917-01 11 8947231 8947231 A G C11orf16 Missense_Mutation p.M328T 0.22 tolerated(0.06) benign(0.001) TCGA-EI-6917-01 11 8983678 8983678 G T TMEM9B Missense_Mutation p.S53Y 0.29 deleterious(0) possibly_damaging(0.574) TCGA-EI-6917-01 11 89867944 89867944 C T NAALAD2 Silent p.G6G 0.19 TCGA-EI-6917-01 11 9009805 9009805 G A NRIP3 Missense_Mutation p.R67C 0.18 deleterious(0) probably_damaging(0.961) TCGA-EI-6917-01 11 9096134 9096134 G A SCUBE2 Silent p.G137G 0.15 TCGA-EI-6917-01 11 9168614 9168614 G A DENND5A Silent p.V940V 0.18 TCGA-EI-6917-01 11 92600263 92600263 C T FAT3 Silent p.F4005F 0.33 TCGA-EI-6917-01 11 93432047 93432047 T G KIAA1731 Missense_Mutation p.I1323M 0.15 deleterious(0.02) possibly_damaging(0.847) TCGA-EI-6917-01 11 93460244 93460244 C A KIAA1731 Missense_Mutation p.S2201Y 0.29 tolerated(0.25) possibly_damaging(0.807) TCGA-EI-6917-01 11 93469161 93469161 C A TAF1D 3'UTR 0.36 TCGA-EI-6917-01 11 93837881 93837881 G A HEPHL1 Missense_Mutation p.R957H 0.27 tolerated(0.17) benign(0.005) TCGA-EI-6917-01 11 94224094 94224094 C A MRE11A Missense_Mutation p.D20Y 0.31 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 11 94279974 94279974 T C FUT4 3'UTR 0.43 TCGA-EI-6917-01 11 94282233 94282233 G T FUT4 3'UTR 0.15 TCGA-EI-6917-01 11 94732241 94732241 C T KDM4D 3'UTR 0.27 TCGA-EI-6917-01 11 95826576 95826576 G A MAML2 Missense_Mutation p.R207C 0.30 benign(0.103) TCGA-EI-6917-01 11 9608281 9608281 G A WEE1 Silent p.E555E 0.20 TCGA-EI-6917-01 11 96125599 96125599 G T JRKL 3'UTR 0.29 TCGA-EI-6917-01 11 992682 992682 C T AP2A2 Silent p.F483F 0.20 TCGA-EI-6917-01 11 99942563 99942563 C A CNTN5 Missense_Mutation p.L476I 0.26 tolerated(0.42) benign(0.348) TCGA-EI-6917-01 12 1005561 1005561 A C WNK1 Missense_Mutation p.T1970P 0.28 tolerated(0.07) benign(0.247) TCGA-EI-6917-01 12 101336182 101336182 G T ANO4 Nonsense_Mutation p.G74* 0.24 TCGA-EI-6917-01 12 10149563 10149563 C A CLEC1B Missense_Mutation p.R107I 0.13 deleterious(0) probably_damaging(0.962) TCGA-EI-6917-01 12 101603388 101603388 C T SLC5A8 Missense_Mutation p.R80H 0.15 deleterious(0.01) benign(0.103) TCGA-EI-6917-01 12 10167159 10167159 G T CLEC12B Missense_Mutation p.E76D 0.27 tolerated(0.06) benign(0.063) TCGA-EI-6917-01 12 101711415 101711415 G T UTP20 Missense_Mutation p.K904N 0.30 tolerated(0.09) benign(0.05) TCGA-EI-6917-01 12 101736254 101736254 C A UTP20 Missense_Mutation p.Q1378K 0.20 tolerated(0.28) benign(0.119) TCGA-EI-6917-01 12 101739349 101739349 T G UTP20 Nonsense_Mutation p.Y1541* 0.23 TCGA-EI-6917-01 12 101794880 101794880 C T ARL1 Missense_Mutation p.R99Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 12 101796692 101796692 T C ARL1 Missense_Mutation p.K59E 0.13 deleterious(0.02) benign(0.02) TCGA-EI-6917-01 12 102045117 102045117 A C MYBPC1 Missense_Mutation p.K466T 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-EI-6917-01 12 102439876 102439876 G A CCDC53 Missense_Mutation p.R58C 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 12 102455107 102455107 C A CCDC53 Missense_Mutation p.Q23H 0.31 tolerated(0.17) possibly_damaging(0.742) TCGA-EI-6917-01 12 102512331 102512331 A G NUP37 5'UTR 0.23 TCGA-EI-6917-01 12 10280352 10280352 T C CLEC7A Missense_Mutation p.T66A 0.30 tolerated(0.42) benign(0.008) TCGA-EI-6917-01 12 102869484 102869484 G A IGF1 Missense_Mutation p.L53F 0.23 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 12 102872371 102872371 C T IGF1 Intron 0.14 TCGA-EI-6917-01 12 10319375 10319375 T G OLR1 Missense_Mutation p.Q120H 0.23 tolerated(0.12) possibly_damaging(0.646) TCGA-EI-6917-01 12 10319379 10319379 T G OLR1 Missense_Mutation p.E119A 0.22 tolerated(0.18) benign(0.006) TCGA-EI-6917-01 12 103232988 103232988 C T PAH Missense_Mutation p.G442R 0.33 tolerated(0.4) benign(0.231) TCGA-EI-6917-01 12 103271292 103271292 C T PAH Missense_Mutation p.R130K 0.37 tolerated(1) benign(0.002) TCGA-EI-6917-01 12 10339039 10339039 C T TMEM52B Missense_Mutation p.A33V 0.22 tolerated(0.26) benign(0.016) TCGA-EI-6917-01 12 104142808 104142808 G A STAB2 Silent p.T2104T 0.23 TCGA-EI-6917-01 12 104341158 104341158 G A HSP90B1 Missense_Mutation p.E778K 0.21 tolerated(0.07) unknown(0) TCGA-EI-6917-01 12 104396951 104396951 G T GLT8D2 Missense_Mutation p.F82L 0.24 deleterious(0) possibly_damaging(0.731) TCGA-EI-6917-01 12 10462044 10462044 C T KLRD1 Missense_Mutation p.S22L 0.22 tolerated(1) benign(0.001) TCGA-EI-6917-01 12 104698593 104698593 G A EID3 Missense_Mutation p.G294E 0.21 tolerated(0.81) benign(0.012) TCGA-EI-6917-01 12 104720159 104720159 G A TXNRD1 Missense_Mutation p.R448K 0.25 tolerated(0.65) benign(0.03) TCGA-EI-6917-01 12 105150763 105150763 C T CHST11 Missense_Mutation p.R81W 0.35 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 105151122 105151122 C T CHST11 Silent p.F200F 0.22 TCGA-EI-6917-01 12 107078653 107078653 C T RFX4 Intron 0.28 TCGA-EI-6917-01 12 107155138 107155138 A G RFX4 Missense_Mutation p.D709G 0.28 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EI-6917-01 12 107365189 107365189 G A C12orf23 3'UTR 0.19 TCGA-EI-6917-01 12 107365260 107365260 G A C12orf23 3'UTR 0.33 TCGA-EI-6917-01 12 107393546 107393546 T C CRY1 Missense_Mutation p.D307G 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 10772689 10772689 G T STYK1 3'UTR 0.31 TCGA-EI-6917-01 12 108170094 108170094 G A ASCL4 3'UTR 0.22 TCGA-EI-6917-01 12 108685675 108685675 C A CMKLR1 Missense_Mutation p.K355N 0.26 tolerated(0.06) benign(0.011) TCGA-EI-6917-01 12 109198957 109198957 G A SSH1 Missense_Mutation p.R277C 0.34 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 12 109509426 109509426 G A USP30 Missense_Mutation p.E164K 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 109541353 109541353 G A UNG Silent p.S246S 0.29 TCGA-EI-6917-01 12 109613968 109613968 G T ACACB Missense_Mutation p.R446I 0.23 tolerated(0.06) possibly_damaging(0.529) TCGA-EI-6917-01 12 109625967 109625967 C T ACACB Missense_Mutation p.S715L 0.20 deleterious(0.01) benign(0.311) TCGA-EI-6917-01 12 109878549 109878549 G A MYO1H Missense_Mutation p.A803T 0.34 tolerated(0.44) benign(0.004) TCGA-EI-6917-01 12 109947484 109947484 C A UBE3B Missense_Mutation p.S569Y 0.21 tolerated(1) benign(0.122) TCGA-EI-6917-01 12 109948233 109948233 G A UBE3B Missense_Mutation p.R609H 0.24 tolerated(0.11) possibly_damaging(0.774) TCGA-EI-6917-01 12 109949037 109949037 G T UBE3B Nonsense_Mutation p.E629* 0.31 TCGA-EI-6917-01 12 110230231 110230231 G T TRPV4 Missense_Mutation p.L610I 0.22 tolerated(0.95) probably_damaging(0.921) TCGA-EI-6917-01 12 110232227 110232227 G A TRPV4 Silent p.F466F 0.21 TCGA-EI-6917-01 12 110252352 110252352 C T TRPV4 Missense_Mutation p.D84N 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.796) TCGA-EI-6917-01 12 11035182 11035182 T C PRH1 Silent p.G72G 0.15 TCGA-EI-6917-01 12 110370658 110370658 C A GIT2 3'UTR 0.36 TCGA-EI-6917-01 12 110765418 110765418 G A ATP2A2 Missense_Mutation p.E231K 0.21 deleterious(0.03) probably_damaging(0.955) TCGA-EI-6917-01 12 11090819 11090819 G T TAS2R14 3'UTR 0.23 TCGA-EI-6917-01 12 11091394 11091394 G A TAS2R14 Missense_Mutation p.S138L 0.24 tolerated(1) benign(0) TCGA-EI-6917-01 12 110989690 110989690 G A PPTC7 Missense_Mutation p.R103C 0.18 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 12 111345179 111345179 G A CCDC63 Missense_Mutation p.D531N 0.16 tolerated(0.14) benign(0.245) TCGA-EI-6917-01 12 11150061 11150061 G T TAS2R20 Missense_Mutation p.F138L 0.21 tolerated(0.62) benign(0) TCGA-EI-6917-01 12 111956087 111956087 C T ATXN2 Silent p.P537P 0.26 TCGA-EI-6917-01 12 112371729 112371729 G A TMEM116 Missense_Mutation p.R232C 0.23 tolerated(0.18) benign(0.006) TCGA-EI-6917-01 12 113306320 113306320 C T RPH3A Missense_Mutation p.P177L 0.22 tolerated(0.17) benign(0.059) TCGA-EI-6917-01 12 113344902 113344902 C A OAS1 Missense_Mutation p.L20I 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 113384669 113384669 G A OAS3 Missense_Mutation p.R253Q 0.21 tolerated(0.18) benign(0.18) TCGA-EI-6917-01 12 113447112 113447112 C A OAS2 Intron 0.26 TCGA-EI-6917-01 12 113553023 113553023 C T RASAL1 Silent p.S350S 0.19 TCGA-EI-6917-01 12 114841697 114841697 C T TBX5 Missense_Mutation p.D3N 0.15 tolerated(0.53) benign(0.078) TCGA-EI-6917-01 12 117383273 117383273 C T FBXW8 Silent p.C176C 0.17 TCGA-EI-6917-01 12 117723132 117723132 G A NOS1 Silent p.F432F 0.29 TCGA-EI-6917-01 12 117768946 117768946 G T NOS1 5'Flank 0.18 TCGA-EI-6917-01 12 118020117 118020117 G T KSR2 Missense_Mutation p.L407I 0.12 tolerated(1) benign(0.011) TCGA-EI-6917-01 12 118405988 118405988 C T KSR2 Missense_Mutation p.E25K 0.32 tolerated(0.09) possibly_damaging(0.59) TCGA-EI-6917-01 12 118517242 118517242 G A VSIG10 Silent p.S278S 0.36 TCGA-EI-6917-01 12 120159246 120159246 T G CIT Missense_Mutation p.K1200N 0.32 tolerated(0.22) probably_damaging(0.999) TCGA-EI-6917-01 12 120210687 120210687 C T CIT Missense_Mutation p.E657K 0.45 deleterious(0.01) possibly_damaging(0.588) TCGA-EI-6917-01 12 120568500 120568500 C T GCN1L1 Missense_Mutation p.E2541K 0.33 benign(0.001) TCGA-EI-6917-01 12 120575054 120575054 C T GCN1L1 Missense_Mutation p.E2245K 0.23 benign(0.124) TCGA-EI-6917-01 12 120638609 120638609 C G RPLP0 5'UTR 0.24 TCGA-EI-6917-01 12 121605371 121605371 C T P2RX7 Silent p.F275F 0.13 TCGA-EI-6917-01 12 121671439 121671439 G T P2RX4 3'UTR 0.32 TCGA-EI-6917-01 12 121701740 121701740 G A CAMKK2 Missense_Mutation p.R210C 0.48 deleterious(0.01) probably_damaging(0.954) TCGA-EI-6917-01 12 122261466 122261466 G A SETD1B Missense_Mutation p.E1618K 0.21 unknown(0) TCGA-EI-6917-01 12 122657032 122657032 G T IL31 Missense_Mutation p.S141Y 0.27 deleterious(0.02) benign(0.025) TCGA-EI-6917-01 12 12279645 12279645 G T LRP6 Missense_Mutation p.S1431Y 0.30 tolerated(0.08) probably_damaging(0.91) TCGA-EI-6917-01 12 123067339 123067339 G A KNTC1 Missense_Mutation p.E1024K 0.28 deleterious(0.02) possibly_damaging(0.689) TCGA-EI-6917-01 12 123345686 123345686 G A HIP1R Missense_Mutation p.D967N 0.26 deleterious(0) probably_damaging(0.98) TCGA-EI-6917-01 12 123466618 123466618 C G ARL6IP4 Missense_Mutation p.T318S 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.681) TCGA-EI-6917-01 12 123481892 123481892 G A PITPNM2 Silent p.D484D 0.38 TCGA-EI-6917-01 12 123799988 123799988 C T SBNO1 Missense_Mutation p.A1018T 0.14 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 123889524 123889524 G A SETD8 Missense_Mutation p.E251K 0.18 deleterious(0.02) possibly_damaging(0.865) TCGA-EI-6917-01 12 124107223 124107223 A G EIF2B1 Missense_Mutation p.L238P 0.34 deleterious(0.03) probably_damaging(0.988) TCGA-EI-6917-01 12 124184348 124184348 G A TCTN2 Missense_Mutation p.E535K 0.27 tolerated(0.06) benign(0.177) TCGA-EI-6917-01 12 124332585 124332585 G A DNAH10 Silent p.A1846A 0.17 TCGA-EI-6917-01 12 124333338 124333338 T G DNAH10 Missense_Mutation p.F1886C 0.18 probably_damaging(1) TCGA-EI-6917-01 12 124497964 124497965 - A ZNF664 3'UTR 0.21 TCGA-EI-6917-01 12 124498552 124498552 C T ZNF664 3'UTR 0.31 TCGA-EI-6917-01 12 125811182 125811182 G A TMEM132B Missense_Mutation p.A5T 0.22 tolerated_low_confidence(0.61) unknown(0) TCGA-EI-6917-01 12 130845764 130845764 G A PIWIL1 Missense_Mutation p.D569N 0.15 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 12 130898839 130898839 C T RIMBP2 Missense_Mutation p.R828Q 0.24 deleterious(0.04) benign(0.07) TCGA-EI-6917-01 12 131484927 131484927 G T GPR133 Splice_Site p.X323_splice 0.20 TCGA-EI-6917-01 12 13232900 13232900 G A KIAA1467 Missense_Mutation p.R607Q 0.23 deleterious(0.03) probably_damaging(0.966) TCGA-EI-6917-01 12 132490710 132490710 G A EP400 Missense_Mutation p.D997N 0.23 unknown(0) TCGA-EI-6917-01 12 132496073 132496073 G T EP400 Missense_Mutation p.R1112I 0.26 unknown(0) TCGA-EI-6917-01 12 132528255 132528255 A C EP400 Missense_Mutation p.E2144D 0.28 unknown(0) TCGA-EI-6917-01 12 132681741 132681741 C A GALNT9 Missense_Mutation p.D209Y 0.41 deleterious(0) possibly_damaging(0.853) TCGA-EI-6917-01 12 133250243 133250243 G A POLE Missense_Mutation p.A426V 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 133250289 133250289 C A POLE Missense_Mutation p.V411L 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 133438112 133438112 G A CHFR Missense_Mutation p.S243L 0.16 tolerated(0.09) benign(0.002) TCGA-EI-6917-01 12 13366682 13366682 C T EMP1 Silent p.V81V 0.31 TCGA-EI-6917-01 12 133682657 133682657 G T ZNF140 Missense_Mutation p.R265I 0.15 deleterious(0.01) possibly_damaging(0.904) TCGA-EI-6917-01 12 133732188 133732188 A G CTD-2140B24.4 Missense_Mutation p.N119S 0.10 tolerated(0.76) benign(0.001) TCGA-EI-6917-01 12 133758562 133758562 G T ZNF268 5'UTR 0.21 TCGA-EI-6917-01 12 13720042 13720042 C T GRIN2B Missense_Mutation p.E839K 0.21 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 12 14018806 14018806 C T GRIN2B Missense_Mutation p.D113N 0.27 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 12 14610231 14610231 T C ATF7IP Splice_Site p.X720_splice 0.41 TCGA-EI-6917-01 12 14649177 14649177 G A ATF7IP Missense_Mutation p.R1098Q 0.30 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 12 14923694 14923694 C T HIST4H4 3'UTR 0.23 TCGA-EI-6917-01 12 14958874 14958874 G T SMCO3 3'UTR 0.24 TCGA-EI-6917-01 12 14959262 14959262 G A SMCO3 Missense_Mutation p.S118L 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 12 14993625 14993625 G A ART4 Nonsense_Mutation p.R203* 0.36 TCGA-EI-6917-01 12 15070132 15070132 C T ERP27 Missense_Mutation p.A186T 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 15097750 15097750 G A ARHGDIB Silent p.G122G 0.11 TCGA-EI-6917-01 12 15637036 15637036 C T PTPRO Silent p.F68F 0.18 TCGA-EI-6917-01 12 15661615 15661615 T G PTPRO Missense_Mutation p.Y460D 0.29 tolerated(0.1) benign(0.049) TCGA-EI-6917-01 12 16189275 16189275 G A DERA Missense_Mutation p.R287Q 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 18891980 18891980 C A CAPZA3 Missense_Mutation p.L260I 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 12 1983801 1983801 G A CACNA2D4 Missense_Mutation p.S616L 0.27 deleterious(0) benign(0.158) TCGA-EI-6917-01 12 20806929 20806929 C T PDE3A Missense_Mutation p.R992C 0.24 deleterious(0) probably_damaging(0.985) TCGA-EI-6917-01 12 20833355 20833355 T G PDE3A 3'UTR 0.27 TCGA-EI-6917-01 12 21011428 21011428 G A LST3 Silent p.P94P 0.21 TCGA-EI-6917-01 12 21175916 21175916 C A SLCO1B7 Missense_Mutation p.S158Y 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-EI-6917-01 12 21220286 21220286 C T SLCO1B7 Silent p.I525I 0.22 TCGA-EI-6917-01 12 21684165 21684165 C A C12orf39 3'UTR 0.26 TCGA-EI-6917-01 12 22208094 22208094 C T CMAS Missense_Mutation p.S91L 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 22677465 22677465 C T C2CD5 Missense_Mutation p.R181Q 0.30 deleterious(0.01) benign(0.17) TCGA-EI-6917-01 12 22680772 22680772 C A C2CD5 Missense_Mutation p.D78Y 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 23699354 23699354 T G SOX5 Missense_Mutation p.K498T 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-EI-6917-01 12 23716326 23716326 C A SOX5 Missense_Mutation p.D452Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 12 24970974 24970974 C A BCAT1 Nonsense_Mutation p.E389* 0.28 TCGA-EI-6917-01 12 250440 250440 C T IQSEC3 Silent p.R714R 0.60 TCGA-EI-6917-01 12 2613673 2613673 C T CACNA1C Intron 0.24 TCGA-EI-6917-01 12 26217948 26217948 C T RASSF8 Silent p.V207V 0.28 TCGA-EI-6917-01 12 26276027 26276027 C A BHLHE41 Nonsense_Mutation p.E141* 0.27 TCGA-EI-6917-01 12 26709169 26709169 G A ITPR2 Missense_Mutation p.S1654L 0.38 deleterious(0.01) benign(0.093) TCGA-EI-6917-01 12 26755429 26755429 C A ITPR2 Splice_Site p.X1185_splice 0.18 TCGA-EI-6917-01 12 26834818 26834818 C T ITPR2 Silent p.Q466Q 0.24 TCGA-EI-6917-01 12 27058329 27058329 C T ASUN 3'UTR 0.31 TCGA-EI-6917-01 12 27066440 27066440 C T ASUN Silent p.E585E 0.22 TCGA-EI-6917-01 12 27067449 27067449 G A ASUN Silent p.I437I 0.24 TCGA-EI-6917-01 12 27148337 27148337 C T TM7SF3 Missense_Mutation p.V175I 0.29 tolerated(0.18) benign(0.001) TCGA-EI-6917-01 12 27461305 27461305 G T STK38L Nonsense_Mutation p.E74* 0.21 TCGA-EI-6917-01 12 27835348 27835348 G A PPFIBP1 Missense_Mutation p.R698Q 0.16 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 12 2786457 2786457 C T CACNA1C Intron 0.21 TCGA-EI-6917-01 12 28116524 28116524 C T PTHLH Missense_Mutation p.R94Q 0.31 tolerated(0.08) probably_damaging(0.98) TCGA-EI-6917-01 12 2939982 2939982 C T NRIP2 Silent p.P129P 0.26 TCGA-EI-6917-01 12 29423416 29423416 T C FAR2 Missense_Mutation p.S12P 0.23 deleterious(0.01) possibly_damaging(0.588) TCGA-EI-6917-01 12 29630145 29630145 C T OVCH1 Missense_Mutation p.A423T 0.33 tolerated(0.06) benign(0.042) TCGA-EI-6917-01 12 29644066 29644066 G T OVCH1 Missense_Mutation p.L172I 0.34 tolerated(0.14) benign(0.04) TCGA-EI-6917-01 12 30818161 30818161 C T IPO8 Missense_Mutation p.R474Q 0.24 deleterious(0) possibly_damaging(0.797) TCGA-EI-6917-01 12 30906661 30906661 C T CAPRIN2 Missense_Mutation p.E13K 0.28 deleterious_low_confidence(0.03) benign(0.003) TCGA-EI-6917-01 12 31246242 31246242 C T DDX11 Silent p.F451F 0.54 TCGA-EI-6917-01 12 31448184 31448184 T G FAM60A Missense_Mutation p.K71T 0.25 tolerated(0.16) benign(0.324) TCGA-EI-6917-01 12 32134413 32134413 G A KIAA1551 Missense_Mutation p.R175Q 0.21 tolerated(0.06) probably_damaging(0.921) TCGA-EI-6917-01 12 32903713 32903713 C T YARS2 Missense_Mutation p.R348Q 0.37 tolerated(0.27) benign(0.152) TCGA-EI-6917-01 12 39724554 39724554 A C KIF21A Missense_Mutation p.L1105V 0.21 tolerated(0.51) probably_damaging(0.93) TCGA-EI-6917-01 12 39967592 39967592 G A ABCD2 Silent p.V643V 0.19 TCGA-EI-6917-01 12 40076672 40076672 A C C12orf40 Missense_Mutation p.K316Q 0.31 tolerated(0.24) benign(0.098) TCGA-EI-6917-01 12 40076805 40076805 C T C12orf40 Missense_Mutation p.S360L 0.20 deleterious(0.01) possibly_damaging(0.885) TCGA-EI-6917-01 12 40158564 40158564 A C SLC2A13 Missense_Mutation p.I514M 0.21 deleterious(0.05) benign(0.102) TCGA-EI-6917-01 12 40939807 40939807 T C MUC19 Splice_Site 0.26 TCGA-EI-6917-01 12 41900435 41900435 G A PDZRN4 Missense_Mutation p.E341K 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6917-01 12 42499835 42499835 C T GXYLT1 Missense_Mutation p.D217N 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 42554538 42554538 C A YAF2 Missense_Mutation p.E156D 0.25 tolerated(0.07) probably_damaging(0.915) TCGA-EI-6917-01 12 43826460 43826460 C A ADAMTS20 Nonsense_Mutation p.E959* 0.22 TCGA-EI-6917-01 12 43944785 43944785 C T ADAMTS20 Missense_Mutation p.R127H 0.29 deleterious(0.02) probably_damaging(0.958) TCGA-EI-6917-01 12 44782338 44782338 C T TMEM117 Silent p.I476I 0.29 TCGA-EI-6917-01 12 4479724 4479724 C T FGF23 Missense_Mutation p.A181T 0.24 tolerated(0.05) possibly_damaging(0.662) TCGA-EI-6917-01 12 4553335 4553335 G A FGF6 Silent p.F138F 0.34 TCGA-EI-6917-01 12 45782049 45782049 C T ANO6 Missense_Mutation p.A445V 0.27 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 12 46125024 46125024 G T ARID2 Nonsense_Mutation p.E71* 0.11 TCGA-EI-6917-01 12 46243362 46243362 G A ARID2 Splice_Site p.X572_splice 0.23 TCGA-EI-6917-01 12 46321416 46321416 C T SCAF11 Missense_Mutation p.E690K 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-EI-6917-01 12 4645355 4645355 C T C12orf4 Silent p.K2K 0.18 TCGA-EI-6917-01 12 46633487 46633487 C T SLC38A1 Missense_Mutation p.E33K 0.28 tolerated(0.27) benign(0.206) TCGA-EI-6917-01 12 46758282 46758282 C T SLC38A2 Missense_Mutation p.E255K 0.25 tolerated(0.62) benign(0.015) TCGA-EI-6917-01 12 47471556 47471556 G A AMIGO2 Silent p.I410I 0.31 TCGA-EI-6917-01 12 48145594 48145594 G A RAPGEF3 Missense_Mutation p.L98F 0.31 tolerated(0.36) benign(0.001) TCGA-EI-6917-01 12 48196010 48196010 C T HDAC7 Missense_Mutation p.A23T 0.46 tolerated_low_confidence(1) benign(0.001) TCGA-EI-6917-01 12 48380651 48380651 G A COL2A1 Silent p.G462G 0.20 TCGA-EI-6917-01 12 48578692 48578692 G A C12orf68 3'UTR 0.54 TCGA-EI-6917-01 12 48877031 48877031 G T C12orf54 5'UTR 0.28 TCGA-EI-6917-01 12 4923690 4923690 G T KCNA6 3'UTR 0.21 TCGA-EI-6917-01 12 49315773 49315773 C A FKBP11 Missense_Mutation p.K200N 0.19 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 12 49318019 49318019 C T FKBP11 Missense_Mutation p.D102N 0.21 tolerated(0.31) benign(0.33) TCGA-EI-6917-01 12 49416114 49416114 C T KMT2D Missense_Mutation p.R5454Q 0.38 unknown(0) TCGA-EI-6917-01 12 49441791 49441791 G A KMT2D Missense_Mutation p.S1398L 0.35 probably_damaging(0.997) TCGA-EI-6917-01 12 49579683 49579683 G A TUBA1A Missense_Mutation p.R156C 0.15 deleterious_low_confidence(0.01) benign(0.177) TCGA-EI-6917-01 12 49663751 49663751 C T TUBA1C Missense_Mutation p.R123C 0.27 deleterious_low_confidence(0) possibly_damaging(0.699) TCGA-EI-6917-01 12 49918674 49918674 C T SPATS2 Missense_Mutation p.R441W 0.13 deleterious(0) possibly_damaging(0.874) TCGA-EI-6917-01 12 50030505 50030505 A G PRPF40B Missense_Mutation p.D478G 0.40 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 12 50044504 50044504 C T FMNL3 Missense_Mutation p.R652H 0.29 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 12 5022360 5022360 A C KCNA1 3'UTR 0.24 TCGA-EI-6917-01 12 5022484 5022484 G T KCNA1 3'UTR 0.27 TCGA-EI-6917-01 12 5025193 5025193 G T KCNA1 3'UTR 0.27 TCGA-EI-6917-01 12 5025937 5025938 - A KCNA1 3'UTR 0.26 TCGA-EI-6917-01 12 50571158 50571158 C A LIMA1 Nonsense_Mutation p.E658* 0.26 TCGA-EI-6917-01 12 50725461 50725461 C A FAM186A Missense_Mutation p.K2280N 0.18 tolerated(0.24) benign(0.076) TCGA-EI-6917-01 12 50725485 50725485 C T FAM186A Silent p.E2272E 0.24 TCGA-EI-6917-01 12 50748496 50748496 C A FAM186A Nonsense_Mutation p.E707* 0.22 TCGA-EI-6917-01 12 50757071 50757071 G A FAM186A Missense_Mutation p.S90L 0.23 tolerated(0.58) benign(0.005) TCGA-EI-6917-01 12 51497497 51497497 C T TFCP2 Missense_Mutation p.R339Q 0.32 tolerated(0.2) benign(0.034) TCGA-EI-6917-01 12 51585531 51585531 A G POU6F1 Silent p.S136S 0.14 TCGA-EI-6917-01 12 51685930 51685930 T C BIN2 Silent p.E320E 0.18 TCGA-EI-6917-01 12 52100452 52100452 C T SCN8A Missense_Mutation p.R530W 0.25 tolerated(0.07) benign(0.032) TCGA-EI-6917-01 12 52451268 52451268 C T NR4A1 Silent p.V511V 0.21 TCGA-EI-6917-01 12 52470642 52470642 C T C12orf44 Missense_Mutation p.R109C 0.23 deleterious(0) benign(0.137) TCGA-EI-6917-01 12 52636903 52636903 C T KRT7 Silent p.I322I 0.30 TCGA-EI-6917-01 12 52680911 52680911 G A KRT81 Missense_Mutation p.R408C 0.18 deleterious(0.01) probably_damaging(0.982) TCGA-EI-6917-01 12 52777579 52777579 G A KRT84 Missense_Mutation p.R184W 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-EI-6917-01 12 52779035 52779035 C T KRT84 Missense_Mutation p.G112D 0.27 tolerated(0.16) possibly_damaging(0.619) TCGA-EI-6917-01 12 52881720 52881720 G T KRT6A Silent p.V493V 0.21 TCGA-EI-6917-01 12 52910639 52910639 G A KRT5 Silent p.C407C 0.19 TCGA-EI-6917-01 12 52913760 52913760 G A KRT5 Silent p.F107F 0.22 TCGA-EI-6917-01 12 53041557 53041557 A G KRT2 Missense_Mutation p.V402A 0.22 deleterious(0.05) benign(0.137) TCGA-EI-6917-01 12 53237892 53237892 C A KRT78 Missense_Mutation p.E344D 0.26 tolerated(0.74) benign(0.009) TCGA-EI-6917-01 12 53608257 53608257 C T RARG Silent p.S203S 0.13 TCGA-EI-6917-01 12 53609205 53609205 C T RARG Missense_Mutation p.R116Q 0.21 deleterious(0) possibly_damaging(0.746) TCGA-EI-6917-01 12 54367137 54367137 A G HOXC11 Missense_Mutation p.T38A 0.21 tolerated(0.34) benign(0.279) TCGA-EI-6917-01 12 54379070 54379070 G A HOXC10 Silent p.P9P 0.23 TCGA-EI-6917-01 12 54575840 54575840 C T SMUG1 3'UTR 0.25 TCGA-EI-6917-01 12 54686820 54686820 C T NFE2 Missense_Mutation p.D154N 0.23 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 12 54857040 54857040 G T GTSF1 Missense_Mutation p.F53L 0.26 deleterious(0) possibly_damaging(0.859) TCGA-EI-6917-01 12 54925050 54925050 G A NCKAP1L Missense_Mutation p.R838Q 0.33 tolerated(0.16) benign(0.03) TCGA-EI-6917-01 12 54978101 54978101 G A PPP1R1A Missense_Mutation p.R30W 0.22 deleterious(0.01) benign(0.025) TCGA-EI-6917-01 12 55038712 55038712 G T DCD Intron 0.24 TCGA-EI-6917-01 12 55367409 55367409 G T TESPA1 Intron 0.29 TCGA-EI-6917-01 12 55420399 55420399 A C NEUROD4 Missense_Mutation p.E59A 0.24 deleterious(0.01) benign(0.379) TCGA-EI-6917-01 12 55422028 55422028 C A NEUROD4 3'UTR 0.54 TCGA-EI-6917-01 12 55641950 55641950 A G OR6C74 Silent p.K293K 0.37 TCGA-EI-6917-01 12 55794346 55794346 C T OR6C65 Missense_Mutation p.L12F 0.34 deleterious_low_confidence(0.01) benign(0.32) TCGA-EI-6917-01 12 56075835 56075835 A G METTL7B Silent p.P99P 0.19 TCGA-EI-6917-01 12 56092314 56092314 C A ITGA7 Nonsense_Mutation p.E353* 0.25 TCGA-EI-6917-01 12 56118152 56118152 C T RDH5 Silent p.D260D 0.34 TCGA-EI-6917-01 12 56217222 56217222 A G DNAJC14 Missense_Mutation p.I493T 0.18 deleterious(0.04) possibly_damaging(0.74) TCGA-EI-6917-01 12 56231653 56231653 C T MMP19 Missense_Mutation p.R345Q 0.39 deleterious(0.02) possibly_damaging(0.892) TCGA-EI-6917-01 12 56355226 56355226 A G PMEL Missense_Mutation p.V70A 0.13 deleterious(0) possibly_damaging(0.72) TCGA-EI-6917-01 12 56487629 56487629 G A ERBB3 Missense_Mutation p.R521Q 0.31 tolerated(0.14) benign(0.001) TCGA-EI-6917-01 12 56492473 56492473 C T ERBB3 Intron 0.12 TCGA-EI-6917-01 12 56504362 56504362 G T PA2G4 Missense_Mutation p.R243I 0.25 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 12 56547690 56547690 G A MYL6B 5'UTR 0.13 TCGA-EI-6917-01 12 56554394 56554394 C T MYL6 Intron 0.24 TCGA-EI-6917-01 12 56561930 56561930 G T SMARCC2 Missense_Mutation p.L891M 0.45 deleterious(0) possibly_damaging(0.665) TCGA-EI-6917-01 12 56663016 56663016 T C COQ10A Missense_Mutation p.V152A 0.25 tolerated(0.05) benign(0.348) TCGA-EI-6917-01 12 56750262 56750262 G A STAT2 Nonsense_Mutation p.R32* 0.50 TCGA-EI-6917-01 12 56848258 56848258 G A MIP Missense_Mutation p.A47V 0.29 deleterious(0) possibly_damaging(0.833) TCGA-EI-6917-01 12 56995920 56995920 A G BAZ2A Missense_Mutation p.S1163P 0.19 tolerated(0.43) benign(0) TCGA-EI-6917-01 12 5708727 5708727 G A ANO2 Missense_Mutation p.S719L 0.21 tolerated(0.3) benign(0.157) TCGA-EI-6917-01 12 5708776 5708776 G A ANO2 Nonsense_Mutation p.R703* 0.25 TCGA-EI-6917-01 12 5744470 5744470 C T ANO2 Missense_Mutation p.R555Q 0.15 deleterious(0.02) possibly_damaging(0.65) TCGA-EI-6917-01 12 57556245 57556245 G A LRP1 Missense_Mutation p.R783H 0.22 probably_damaging(0.965) TCGA-EI-6917-01 12 57843492 57843492 G A INHBC Missense_Mutation p.R249Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 12 57858528 57858528 C T GLI1 Missense_Mutation p.S89L 0.29 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 12 57957974 57957974 G T KIF5A Missense_Mutation p.E125D 0.24 tolerated(0.06) benign(0.398) TCGA-EI-6917-01 12 57968877 57968877 T A KIF5A Missense_Mutation p.I576N 0.36 tolerated(0.49) benign(0.361) TCGA-EI-6917-01 12 58017843 58017843 G A SLC26A10 Missense_Mutation p.E397K 0.44 deleterious(0.01) possibly_damaging(0.876) TCGA-EI-6917-01 12 58022037 58022037 G A B4GALNT1 Silent p.F337F 0.21 TCGA-EI-6917-01 12 58023801 58023801 G A B4GALNT1 Intron 0.19 TCGA-EI-6917-01 12 58159104 58159104 C T CYP27B1 Missense_Mutation p.E189K 0.12 deleterious(0.01) probably_damaging(0.958) TCGA-EI-6917-01 12 58164962 58164962 G A METTL1 Silent p.H63H 0.23 TCGA-EI-6917-01 12 59282743 59282743 C T LRIG3 Missense_Mutation p.E221K 0.28 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 12 63042193 63042193 G A PPM1H 3'UTR 0.33 TCGA-EI-6917-01 12 63977687 63977687 C T DPY19L2 Intron 0.37 TCGA-EI-6917-01 12 64002439 64002439 C T DPY19L2 Missense_Mutation p.R412K 0.11 tolerated(0.56) benign(0.006) TCGA-EI-6917-01 12 64746691 64746691 T G C12orf56 Missense_Mutation p.K133T 0.20 tolerated(0.5) benign(0) TCGA-EI-6917-01 12 65564798 65564798 G A LEMD3 Silent p.S474S 0.18 TCGA-EI-6917-01 12 66531703 66531703 T G TMBIM4 3'UTR 0.17 TCGA-EI-6917-01 12 66605291 66605291 G T IRAK3 Missense_Mutation p.D168Y 0.24 deleterious(0) probably_damaging(0.984) TCGA-EI-6917-01 12 6690849 6690849 C T CHD4 Silent p.T1549T 0.28 TCGA-EI-6917-01 12 6701945 6701945 C T CHD4 Silent p.K897K 0.24 TCGA-EI-6917-01 12 6707453 6707453 G A CHD4 Missense_Mutation p.R541W 0.22 deleterious(0) probably_damaging(0.965) TCGA-EI-6917-01 12 68053533 68053533 C A DYRK2 3'UTR 0.33 TCGA-EI-6917-01 12 68053695 68053695 C T DYRK2 3'UTR 0.20 TCGA-EI-6917-01 12 68053747 68053747 C A DYRK2 3'UTR 0.25 TCGA-EI-6917-01 12 68715393 68715393 C T MDM1 Missense_Mutation p.D273N 0.26 tolerated(0.09) possibly_damaging(0.692) TCGA-EI-6917-01 12 6884815 6884815 C G LAG3 Intron 0.36 TCGA-EI-6917-01 12 69250344 69250344 G T CPM Missense_Mutation p.S402Y 0.18 deleterious(0.02) benign(0.235) TCGA-EI-6917-01 12 6933323 6933323 G A GPR162 Missense_Mutation p.E87K 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-EI-6917-01 12 69759620 69759620 G A YEATS4 Missense_Mutation p.E97K 0.28 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 12 70071028 70071028 G A BEST3 Nonsense_Mutation p.R216* 0.16 TCGA-EI-6917-01 12 7022150 7022150 G A LRRC23 Missense_Mutation p.E339K 0.46 tolerated_low_confidence(0.18) benign(0.001) TCGA-EI-6917-01 12 7090273 7090273 G T LPCAT3 Missense_Mutation p.F190L 0.25 tolerated(0.07) probably_damaging(0.95) TCGA-EI-6917-01 12 71016405 71016405 G A PTPRB Missense_Mutation p.S158L 0.19 tolerated_low_confidence(0.11) benign(0.002) TCGA-EI-6917-01 12 71155319 71155319 G A PTPRR Missense_Mutation p.R187C 0.31 deleterious(0) possibly_damaging(0.487) TCGA-EI-6917-01 12 72014042 72014042 C T ZFC3H1 Missense_Mutation p.A1600T 0.22 tolerated(0.36) benign(0) TCGA-EI-6917-01 12 72030283 72030283 C T ZFC3H1 Missense_Mutation p.R696Q 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-EI-6917-01 12 72037919 72037919 G A ZFC3H1 Nonsense_Mutation p.R487* 0.25 TCGA-EI-6917-01 12 7241555 7241555 C T C1R Missense_Mutation p.E265K 0.25 tolerated(0.46) probably_damaging(0.937) TCGA-EI-6917-01 12 73056901 73056901 G A TRHDE Missense_Mutation p.E1001K 0.19 tolerated(1) benign(0.037) TCGA-EI-6917-01 12 7343848 7343848 G A PEX5 Silent p.Q85Q 0.09 TCGA-EI-6917-01 12 7361084 7361084 G T PEX5 Missense_Mutation p.A420S 0.33 deleterious(0.01) probably_damaging(0.949) TCGA-EI-6917-01 12 7479625 7479625 G T ACSM4 Missense_Mutation p.E530D 0.25 tolerated(0.49) benign(0.003) TCGA-EI-6917-01 12 74932517 74932517 A C ATXN7L3B 3'UTR 0.18 TCGA-EI-6917-01 12 75436155 75436155 C T KCNC2 3'UTR 0.41 TCGA-EI-6917-01 12 75685601 75685601 C A CAPS2 Splice_Site p.X407_splice 0.20 TCGA-EI-6917-01 12 75807437 75807437 A G GLIPR1L2 Silent p.G180G 0.24 TCGA-EI-6917-01 12 75816975 75816975 T G GLIPR1L2 Intron 0.29 TCGA-EI-6917-01 12 75897824 75897824 C A KRR1 Missense_Mutation p.D231Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 12 7635994 7635994 C T CD163 Silent p.G1019G 0.30 TCGA-EI-6917-01 12 7640322 7640322 C A CD163 Intron 0.19 TCGA-EI-6917-01 12 76740318 76740318 T C BBS10 Missense_Mutation p.T483A 0.34 tolerated(0.31) benign(0.004) TCGA-EI-6917-01 12 76881297 76881297 C T OSBPL8 Missense_Mutation p.R12Q 0.23 tolerated_low_confidence(0.13) benign(0) TCGA-EI-6917-01 12 77220694 77220694 C T ZDHHC17 Missense_Mutation p.R302W 0.23 deleterious(0) benign(0.353) TCGA-EI-6917-01 12 78400334 78400334 T G NAV3 Missense_Mutation p.V339G 0.20 deleterious(0) benign(0.144) TCGA-EI-6917-01 12 7842975 7842975 G A GDF3 Silent p.F198F 0.27 TCGA-EI-6917-01 12 78513200 78513200 C A NAV3 Nonsense_Mutation p.S1075* 0.24 TCGA-EI-6917-01 12 7868018 7868018 C T DPPA3 Missense_Mutation p.R108C 0.24 tolerated(0.06) possibly_damaging(0.542) TCGA-EI-6917-01 12 7869598 7869598 C A DPPA3 Missense_Mutation p.F135L 0.18 deleterious(0.05) benign(0.053) TCGA-EI-6917-01 12 79679601 79679601 C T SYT1 Silent p.V67V 0.25 TCGA-EI-6917-01 12 79689917 79689917 C T SYT1 Silent p.Y181Y 0.13 TCGA-EI-6917-01 12 79988182 79988182 C T PAWR Missense_Mutation p.R288K 0.25 deleterious(0.04) benign(0.255) TCGA-EI-6917-01 12 80717613 80717613 C A OTOGL Missense_Mutation p.L1389I 0.29 tolerated(0.23) probably_damaging(0.998) TCGA-EI-6917-01 12 8074063 8074063 G A SLC2A3 Silent p.G479G 0.22 TCGA-EI-6917-01 12 80749626 80749626 G T OTOGL Nonsense_Mutation p.E1893* 0.28 TCGA-EI-6917-01 12 81111001 81111001 G A MYF5 Silent p.E53E 0.25 TCGA-EI-6917-01 12 81655816 81655816 G A PPFIA2 Missense_Mutation p.A1240V 0.23 deleterious_low_confidence(0.03) benign(0.02) TCGA-EI-6917-01 12 81693092 81693092 G A PPFIA2 Silent p.V904V 0.19 TCGA-EI-6917-01 12 8212381 8212381 C T C3AR1 Missense_Mutation p.R134H 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 85255518 85255518 G A SLC6A15 Nonsense_Mutation p.R696* 0.30 TCGA-EI-6917-01 12 85423524 85423524 C A TSPAN19 Missense_Mutation p.D38Y 0.23 deleterious(0.02) possibly_damaging(0.499) TCGA-EI-6917-01 12 85515557 85515557 G A LRRIQ1 Missense_Mutation p.E1154K 0.38 tolerated(0.18) possibly_damaging(0.678) TCGA-EI-6917-01 12 85638824 85638824 T G LRRIQ1 3'UTR 0.41 TCGA-EI-6917-01 12 85677394 85677394 G A ALX1 Missense_Mutation p.E91K 0.18 tolerated(0.12) benign(0.164) TCGA-EI-6917-01 12 85680646 85680646 C T ALX1 Nonsense_Mutation p.R183* 0.24 TCGA-EI-6917-01 12 88487724 88487724 C A CEP290 Missense_Mutation p.K1044N 0.29 benign(0.148) TCGA-EI-6917-01 12 88510859 88510859 C A CEP290 Missense_Mutation p.R592I 0.14 benign(0.041) TCGA-EI-6917-01 12 88530535 88530535 T C CEP290 Missense_Mutation p.D109G 0.24 probably_damaging(0.998) TCGA-EI-6917-01 12 8976415 8976415 C A A2ML1 Missense_Mutation p.Q116K 0.19 tolerated(0.42) benign(0.005) TCGA-EI-6917-01 12 90004986 90004986 C T ATP2B1 Missense_Mutation p.R744Q 0.37 deleterious(0.01) benign(0.216) TCGA-EI-6917-01 12 9004828 9004828 C T A2ML1 Missense_Mutation p.S829L 0.43 deleterious(0.03) benign(0.429) TCGA-EI-6917-01 12 90049759 90049759 C A ATP2B1 5'UTR 0.21 TCGA-EI-6917-01 12 9013857 9013857 C T A2ML1 Missense_Mutation p.L1156F 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 12 91347554 91347554 G A CCER1 Silent p.V322V 0.22 TCGA-EI-6917-01 12 91558423 91558423 C T DCN Missense_Mutation p.E95K 0.16 tolerated(0.09) possibly_damaging(0.563) TCGA-EI-6917-01 12 9220477 9220477 C T A2M Intron 0.32 TCGA-EI-6917-01 12 9221419 9221419 C T A2M Missense_Mutation p.S1428N 0.39 tolerated(0.21) benign(0.006) TCGA-EI-6917-01 12 92814936 92814936 T G CLLU1OS Silent p.T52T 0.29 TCGA-EI-6917-01 12 9303285 9303285 C T PZP Missense_Mutation p.D1447N 0.22 tolerated(1) probably_damaging(0.973) TCGA-EI-6917-01 12 93164027 93164027 C A PLEKHG7 3'UTR 0.19 TCGA-EI-6917-01 12 9318647 9318647 C T PZP Splice_Site p.X753_splice 0.26 TCGA-EI-6917-01 12 93206854 93206854 C T EEA1 Missense_Mutation p.E649K 0.18 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 12 93210117 93210117 C A EEA1 Missense_Mutation p.E596D 0.25 tolerated(0.25) benign(0.079) TCGA-EI-6917-01 12 93213173 93213173 C A EEA1 Nonsense_Mutation p.E547* 0.25 TCGA-EI-6917-01 12 94072766 94072766 C T CRADD Silent p.F72F 0.35 TCGA-EI-6917-01 12 94562965 94562965 G A PLXNC1 Missense_Mutation p.A367T 0.29 tolerated(0.36) benign(0.045) TCGA-EI-6917-01 12 94603390 94603390 A G PLXNC1 Silent p.V488V 0.18 TCGA-EI-6917-01 12 94702612 94702612 C T CCDC41 Missense_Mutation p.E695K 0.24 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 12 94703806 94703806 C T CCDC41 Missense_Mutation p.R630Q 0.31 tolerated(0.06) probably_damaging(0.998) TCGA-EI-6917-01 12 94703807 94703807 G A CCDC41 Nonsense_Mutation p.R630* 0.37 TCGA-EI-6917-01 12 94805487 94805487 C A CCDC41 Nonsense_Mutation p.E104* 0.27 TCGA-EI-6917-01 12 95528598 95528598 C T FGD6 Missense_Mutation p.S1000N 0.17 tolerated(0.07) benign(0.16) TCGA-EI-6917-01 12 95546707 95546707 C A FGD6 Missense_Mutation p.E883D 0.35 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 12 95603588 95603588 G T FGD6 Missense_Mutation p.S491Y 0.13 deleterious(0) possibly_damaging(0.897) TCGA-EI-6917-01 12 95927460 95927460 C A USP44 Missense_Mutation p.K191N 0.24 tolerated(0.06) benign(0.059) TCGA-EI-6917-01 12 95927550 95927550 G T USP44 Silent p.I161I 0.22 TCGA-EI-6917-01 12 96181127 96181127 C T NTN4 Missense_Mutation p.E59K 0.29 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 12 96374439 96374439 C T HAL Missense_Mutation p.E472K 0.25 deleterious(0) probably_damaging(0.918) TCGA-EI-6917-01 12 968584 968584 C A WNK1 Missense_Mutation p.S525Y 0.35 deleterious(0) unknown(0) TCGA-EI-6917-01 12 97147573 97147573 G A C12orf55 Silent p.S2579S 0.31 TCGA-EI-6917-01 12 97328953 97328953 G T NEDD1 Missense_Mutation p.R237I 0.19 deleterious(0) possibly_damaging(0.847) TCGA-EI-6917-01 12 98927398 98927398 G A TMPO Missense_Mutation p.E455K 0.22 deleterious_low_confidence(0.04) benign(0.078) TCGA-EI-6917-01 12 9907035 9907035 G T CD69 Intron 0.27 TCGA-EI-6917-01 12 99145253 99145253 G A ANKS1B Silent p.V1184V 0.29 TCGA-EI-6917-01 12 99145259 99145259 G A ANKS1B Silent p.F1182F 0.29 TCGA-EI-6917-01 12 99194869 99194869 C T ANKS1B Missense_Mutation p.R1034Q 0.28 deleterious(0) probably_damaging(0.942) TCGA-EI-6917-01 12 99223027 99223027 G A ANKS1B Silent p.G997G 0.20 TCGA-EI-6917-01 13 100191808 100191808 C T TM9SF2 Silent p.F275F 0.27 TCGA-EI-6917-01 13 101266579 101266579 C T TMTC4 Missense_Mutation p.D648N 0.28 deleterious(0.01) benign(0.446) TCGA-EI-6917-01 13 101890181 101890181 G A NALCN Silent p.F453F 0.18 TCGA-EI-6917-01 13 102235629 102235629 T C ITGBL1 Missense_Mutation p.I264T 0.22 deleterious(0) possibly_damaging(0.573) TCGA-EI-6917-01 13 102368191 102368191 A C ITGBL1 3'UTR 0.27 TCGA-EI-6917-01 13 102375051 102375051 C T FGF14 3'UTR 0.23 TCGA-EI-6917-01 13 103292684 103292684 C T TPP2 Nonsense_Mutation p.R660* 0.22 TCGA-EI-6917-01 13 103381916 103381916 C A CCDC168 Missense_Mutation p.R2415I 0.31 deleterious(0.01) unknown(0) TCGA-EI-6917-01 13 103384984 103384984 C T CCDC168 Silent p.K1392K 0.23 TCGA-EI-6917-01 13 103386288 103386288 G T CCDC168 Missense_Mutation p.L958I 0.26 tolerated(0.08) possibly_damaging(0.567) TCGA-EI-6917-01 13 103386293 103386293 C T CCDC168 Missense_Mutation p.R956Q 0.32 tolerated(1) benign(0.417) TCGA-EI-6917-01 13 103386491 103386491 G A CCDC168 Missense_Mutation p.S890L 0.28 tolerated(0.06) possibly_damaging(0.504) TCGA-EI-6917-01 13 103386821 103386821 C T CCDC168 Missense_Mutation p.G780E 0.25 tolerated(0.91) benign(0) TCGA-EI-6917-01 13 103386918 103386918 C T CCDC168 Missense_Mutation p.D748N 0.23 tolerated(0.19) possibly_damaging(0.741) TCGA-EI-6917-01 13 103387371 103387371 T G CCDC168 Missense_Mutation p.I597L 0.26 tolerated(0.49) benign(0.068) TCGA-EI-6917-01 13 103387517 103387517 T G CCDC168 Missense_Mutation p.D548A 0.21 tolerated(0.06) possibly_damaging(0.728) TCGA-EI-6917-01 13 103388085 103388085 C T CCDC168 Missense_Mutation p.A359T 0.24 tolerated(0.18) possibly_damaging(0.682) TCGA-EI-6917-01 13 103389132 103389132 T G CCDC168 Missense_Mutation p.N10H 0.13 deleterious(0.02) possibly_damaging(0.844) TCGA-EI-6917-01 13 103396553 103396553 C T LINC00283 RNA 0.24 TCGA-EI-6917-01 13 103443456 103443456 T C KDELC1 Missense_Mutation p.N293S 0.20 tolerated(0.07) benign(0.441) TCGA-EI-6917-01 13 103443721 103443721 C T KDELC1 Silent p.K244K 0.19 TCGA-EI-6917-01 13 103492093 103492093 C T BIVM-ERCC5 Missense_Mutation p.R436C 0.33 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-EI-6917-01 13 103492146 103492146 G T BIVM-ERCC5 Missense_Mutation p.K453N 0.17 deleterious_low_confidence(0.02) benign(0.05) TCGA-EI-6917-01 13 103518105 103518105 C T BIVM-ERCC5 Silent p.G1107G 0.36 TCGA-EI-6917-01 13 103519116 103519116 G A BIVM-ERCC5 Silent p.A1244A 0.24 TCGA-EI-6917-01 13 107147261 107147261 G A EFNB2 Missense_Mutation p.S194L 0.17 tolerated(0.07) benign(0.006) TCGA-EI-6917-01 13 107148154 107148154 G A EFNB2 Silent p.N147N 0.24 TCGA-EI-6917-01 13 108884386 108884386 T C ABHD13 3'UTR 0.23 TCGA-EI-6917-01 13 108884411 108884411 G A ABHD13 3'UTR 0.18 TCGA-EI-6917-01 13 108885879 108885879 T C ABHD13 3'UTR 0.34 TCGA-EI-6917-01 13 109535410 109535410 T C MYO16 Missense_Mutation p.S455P 0.20 deleterious(0) probably_damaging(0.932) TCGA-EI-6917-01 13 109753197 109753197 C T MYO16 Nonsense_Mutation p.R1112* 0.36 TCGA-EI-6917-01 13 111286940 111286940 G A CARKD Missense_Mutation p.A182T 0.30 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 13 111373297 111373297 G T ING1 3'UTR 0.26 TCGA-EI-6917-01 13 111944633 111944633 C T ARHGEF7 Missense_Mutation p.S789F 0.32 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-EI-6917-01 13 113474217 113474217 C T ATP11A Silent p.F226F 0.28 TCGA-EI-6917-01 13 113516853 113516853 C T ATP11A Silent p.F985F 0.22 TCGA-EI-6917-01 13 113742683 113742683 C T MCF2L Missense_Mutation p.R911W 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 13 113793763 113793763 G A F10 Missense_Mutation p.E117K 0.19 tolerated(0.17) probably_damaging(0.97) TCGA-EI-6917-01 13 113854748 113854748 C T PCID2 Missense_Mutation p.R40Q 0.24 tolerated(0.16) benign(0.301) TCGA-EI-6917-01 13 114498132 114498132 G A TMEM255B Silent p.A88A 0.21 TCGA-EI-6917-01 13 114514895 114514895 G T TMEM255B 3'UTR 0.21 TCGA-EI-6917-01 13 115004889 115004889 G T CDC16 Missense_Mutation p.R102I 0.18 tolerated(0.24) benign(0.002) TCGA-EI-6917-01 13 19748171 19748171 G A TUBA3C Silent p.F395F 0.29 TCGA-EI-6917-01 13 19752444 19752444 C T TUBA3C Missense_Mutation p.G106D 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-EI-6917-01 13 20025334 20025334 C T TPTE2 Missense_Mutation p.R258Q 0.24 tolerated(0.63) benign(0.006) TCGA-EI-6917-01 13 20425903 20425903 C T ZMYM5 Missense_Mutation p.E140K 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.81) TCGA-EI-6917-01 13 20580517 20580517 C T ZMYM2 Missense_Mutation p.R435C 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 13 20717010 20717010 G A GJA3 Missense_Mutation p.R140C 0.28 tolerated(0.06) benign(0.109) TCGA-EI-6917-01 13 21173632 21173632 G T IFT88 Missense_Mutation p.R256I 0.21 tolerated(0.05) possibly_damaging(0.46) TCGA-EI-6917-01 13 21374438 21374438 G A XPO4 Silent p.F668F 0.27 TCGA-EI-6917-01 13 21436902 21436902 C T XPO4 Missense_Mutation p.E91K 0.20 tolerated(0.58) benign(0.026) TCGA-EI-6917-01 13 21752554 21752554 C T MRP63 3'UTR 0.45 TCGA-EI-6917-01 13 22084147 22084147 G A MICU2 Nonsense_Mutation p.R253* 0.20 TCGA-EI-6917-01 13 22113456 22113456 C A MICU2 Missense_Mutation p.D151Y 0.27 deleterious(0) probably_damaging(0.947) TCGA-EI-6917-01 13 23898591 23898591 G A SGCG Missense_Mutation p.E263K 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 13 23904858 23904858 C T SACS Missense_Mutation p.R4386Q 0.25 benign(0.113) TCGA-EI-6917-01 13 23905041 23905041 C T SACS Missense_Mutation p.R4325Q 0.20 probably_damaging(0.978) TCGA-EI-6917-01 13 23906077 23906077 C A SACS Nonsense_Mutation p.E3980* 0.17 TCGA-EI-6917-01 13 23906738 23906738 C T SACS Silent p.T3759T 0.23 TCGA-EI-6917-01 13 23909298 23909298 C T SACS Missense_Mutation p.R2906Q 0.14 probably_damaging(0.99) TCGA-EI-6917-01 13 23910182 23910182 C T SACS Silent p.T2611T 0.26 TCGA-EI-6917-01 13 23910510 23910510 C T SACS Missense_Mutation p.R2502Q 0.29 probably_damaging(0.992) TCGA-EI-6917-01 13 23911821 23911821 A T SACS Missense_Mutation p.I2065N 0.27 possibly_damaging(0.643) TCGA-EI-6917-01 13 24520029 24520029 C A ANKRD20A19P RNA 0.32 TCGA-EI-6917-01 13 24895592 24895592 G A C1QTNF9 Missense_Mutation p.E230K 0.12 tolerated(0.11) benign(0.007) TCGA-EI-6917-01 13 25075780 25075780 T G PARP4 Missense_Mutation p.S109R 0.28 tolerated(0.11) benign(0.013) TCGA-EI-6917-01 13 25157681 25157681 G A RP11-556N21.1 RNA 0.24 TCGA-EI-6917-01 13 25262595 25262595 G A ATP12A Missense_Mutation p.A123T 0.15 deleterious(0.01) benign(0.421) TCGA-EI-6917-01 13 25348979 25348979 G A RNF17 Missense_Mutation p.R85H 0.23 deleterious_low_confidence(0.01) benign(0.001) TCGA-EI-6917-01 13 25448298 25448298 G A RNF17 Silent p.A1498A 0.19 TCGA-EI-6917-01 13 25671274 25671274 C T PABPC3 Missense_Mutation p.A313V 0.29 tolerated(0.05) benign(0.011) TCGA-EI-6917-01 13 25671873 25671873 C T PABPC3 Missense_Mutation p.R513C 0.20 tolerated(0.1) benign(0.008) TCGA-EI-6917-01 13 25672583 25672583 C A PABPC3 3'UTR 0.16 TCGA-EI-6917-01 13 25840342 25840342 A G MTMR6 Silent p.D129D 0.22 TCGA-EI-6917-01 13 26154071 26154071 G A ATP8A2 Missense_Mutation p.E665K 0.30 deleterious(0.01) possibly_damaging(0.652) TCGA-EI-6917-01 13 26343362 26343362 G A ATP8A2 Missense_Mutation p.A855T 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 13 26956965 26956965 T G CDK8 Missense_Mutation p.I157M 0.31 deleterious(0) probably_damaging(0.985) TCGA-EI-6917-01 13 26974623 26974623 C T CDK8 Nonsense_Mutation p.R323* 0.24 TCGA-EI-6917-01 13 27216513 27216513 G A WASF3 Missense_Mutation p.A36T 0.22 tolerated(0.09) possibly_damaging(0.846) TCGA-EI-6917-01 13 27828384 27828384 G A RPL21 Missense_Mutation p.R32Q 0.30 tolerated(0.26) benign(0.008) TCGA-EI-6917-01 13 28578093 28578093 G T FLT3 3'UTR 0.23 TCGA-EI-6917-01 13 28973236 28973236 G T FLT1 Intron 0.27 TCGA-EI-6917-01 13 29287375 29287375 G A SLC46A3 Nonsense_Mutation p.R168* 0.25 TCGA-EI-6917-01 13 29599168 29599168 G A MTUS2 Silent p.E121E 0.21 TCGA-EI-6917-01 13 29608264 29608264 T C MTUS2 Splice_Site p.X826_splice 0.18 TCGA-EI-6917-01 13 31843388 31843388 G A B3GALTL Missense_Mutation p.D212N 0.31 deleterious(0) probably_damaging(0.949) TCGA-EI-6917-01 13 32332529 32332529 G A RXFP2 Missense_Mutation p.E77K 0.27 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 13 32760517 32760517 G A FRY Missense_Mutation p.R1147K 0.24 tolerated(0.36) possibly_damaging(0.665) TCGA-EI-6917-01 13 32783830 32783830 C A FRY Missense_Mutation p.L1462I 0.26 tolerated(0.84) benign(0.085) TCGA-EI-6917-01 13 32805434 32805434 T C FRY Missense_Mutation p.S1842P 0.27 tolerated(0.54) benign(0.029) TCGA-EI-6917-01 13 32850691 32850691 A G FRY Missense_Mutation p.T2793A 0.17 tolerated(1) benign(0.002) TCGA-EI-6917-01 13 32878092 32878092 C T ZAR1L Missense_Mutation p.R297Q 0.27 deleterious(0) probably_damaging(0.928) TCGA-EI-6917-01 13 32884782 32884782 C T ZAR1L Silent p.T247T 0.27 TCGA-EI-6917-01 13 32977335 32977335 C T N4BP2L1 Missense_Mutation p.R159K 0.23 tolerated(0.06) benign(0.252) TCGA-EI-6917-01 13 32978396 32978396 C T N4BP2L1 Intron 0.27 TCGA-EI-6917-01 13 33275565 33275565 G A PDS5B Missense_Mutation p.E616K 0.13 deleterious(0.04) possibly_damaging(0.786) TCGA-EI-6917-01 13 33334792 33334792 G A PDS5B Missense_Mutation p.R1151Q 0.24 tolerated(0.59) probably_damaging(0.99) TCGA-EI-6917-01 13 33629245 33629245 C T KL Silent p.F464F 0.26 TCGA-EI-6917-01 13 33635074 33635074 C T KL Missense_Mutation p.R620C 0.20 deleterious(0.02) benign(0.373) TCGA-EI-6917-01 13 34410451 34410451 G A RFC3 3'UTR 0.23 TCGA-EI-6917-01 13 35692599 35692599 G T NBEA Missense_Mutation p.R744I 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 13 35770201 35770201 G A NBEA Missense_Mutation p.E1710K 0.18 deleterious_low_confidence(0.04) benign(0.097) TCGA-EI-6917-01 13 35770426 35770426 C A NBEA Missense_Mutation p.H1785N 0.19 deleterious_low_confidence(0.02) benign(0.269) TCGA-EI-6917-01 13 36049310 36049310 C T MAB21L1 Silent p.P322P 0.16 TCGA-EI-6917-01 13 36348695 36348695 G A DCLK1 3'UTR 0.22 TCGA-EI-6917-01 13 36909247 36909247 C T SPG20 Missense_Mutation p.A241T 0.27 tolerated(0.06) possibly_damaging(0.685) TCGA-EI-6917-01 13 37453778 37453778 C T SMAD9 Missense_Mutation p.A17T 0.35 tolerated(0.19) benign(0.271) TCGA-EI-6917-01 13 37576630 37576630 G T EXOSC8 Missense_Mutation p.E20D 0.21 deleterious(0.02) benign(0.019) TCGA-EI-6917-01 13 37678626 37678626 G A CSNK1A1L Silent p.F256F 0.27 TCGA-EI-6917-01 13 38211527 38211527 T C TRPC4 Missense_Mutation p.N821S 0.23 tolerated_low_confidence(0.81) benign(0.004) TCGA-EI-6917-01 13 38266146 38266146 C T TRPC4 Silent p.P408P 0.17 TCGA-EI-6917-01 13 39265703 39265703 C T FREM2 Missense_Mutation p.R1408C 0.33 tolerated(0.11) probably_damaging(0.957) TCGA-EI-6917-01 13 39425912 39425912 C T FREM2 Missense_Mutation p.R2278C 0.32 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 13 39540883 39540883 C A STOML3 3'UTR 0.26 TCGA-EI-6917-01 13 39611368 39611368 C T PROSER1 Silent p.K4K 0.14 TCGA-EI-6917-01 13 39613721 39613721 G T NHLRC3 Missense_Mutation p.K86N 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6917-01 13 41383903 41383903 C A SLC25A15 3'UTR 0.47 TCGA-EI-6917-01 13 41705163 41705163 G A KBTBD6 Silent p.F495F 0.31 TCGA-EI-6917-01 13 41705201 41705201 G A KBTBD6 Nonsense_Mutation p.R483* 0.24 TCGA-EI-6917-01 13 41932577 41932577 G T NAA16 Nonsense_Mutation p.E409* 0.24 TCGA-EI-6917-01 13 42142408 42142408 G A VWA8 Silent p.F1881F 0.39 TCGA-EI-6917-01 13 42144646 42144646 G A VWA8 Missense_Mutation p.A1856V 0.31 tolerated(0.12) probably_damaging(0.951) TCGA-EI-6917-01 13 42772653 42772653 C T DGKH Missense_Mutation p.S736L 0.29 deleterious(0.01) possibly_damaging(0.506) TCGA-EI-6917-01 13 45010694 45010694 G T TSC22D1 Intron 0.26 TCGA-EI-6917-01 13 45768252 45768252 G A KCTD4 Missense_Mutation p.R151C 0.24 deleterious(0) probably_damaging(0.952) TCGA-EI-6917-01 13 46287374 46287374 G A SPERT Missense_Mutation p.A72T 0.37 tolerated_low_confidence(0.11) benign(0.032) TCGA-EI-6917-01 13 46287808 46287808 G A SPERT Silent p.S216S 0.31 TCGA-EI-6917-01 13 46357910 46357910 C T SIAH3 Missense_Mutation p.E140K 0.31 deleterious(0.04) possibly_damaging(0.625) TCGA-EI-6917-01 13 46541951 46541951 G A ZC3H13 Nonsense_Mutation p.R1337* 0.24 TCGA-EI-6917-01 13 46542161 46542161 G A ZC3H13 Missense_Mutation p.R1267C 0.21 unknown(0) TCGA-EI-6917-01 13 46679138 46679138 G A CPB2 Missense_Mutation p.L3F 0.30 tolerated(0.29) benign(0.008) TCGA-EI-6917-01 13 46708383 46708383 T G LCP1 Missense_Mutation p.Y502S 0.15 deleterious(0) possibly_damaging(0.639) TCGA-EI-6917-01 13 46732983 46732983 A G LCP1 Missense_Mutation p.I69T 0.21 deleterious(0) possibly_damaging(0.846) TCGA-EI-6917-01 13 46841030 46841030 T G LRRC63 Missense_Mutation p.I491M 0.26 tolerated(0.05) benign(0.358) TCGA-EI-6917-01 13 47243167 47243167 G A LRCH1 Missense_Mutation p.R152Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 13 47324767 47324767 G A LRCH1 Silent p.T691T 0.28 TCGA-EI-6917-01 13 48528687 48528687 A G SUCLA2 Missense_Mutation p.C270R 0.34 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 13 48615145 48615145 C A NUDT15 Missense_Mutation p.S83Y 0.29 deleterious(0.01) possibly_damaging(0.866) TCGA-EI-6917-01 13 48986971 48986971 A T LPAR6 5'UTR 0.19 TCGA-EI-6917-01 13 49282715 49282715 G T CYSLTR2 3'UTR 0.28 TCGA-EI-6917-01 13 49283405 49283405 C T CYSLTR2 3'UTR 0.28 TCGA-EI-6917-01 13 49705294 49705294 C T FNDC3A Nonsense_Mutation p.R92* 0.23 TCGA-EI-6917-01 13 50034310 50034310 A G SETDB2 Silent p.V28V 0.25 TCGA-EI-6917-01 13 50115950 50115950 G A RCBTB1 Nonsense_Mutation p.R396* 0.37 TCGA-EI-6917-01 13 50206805 50206805 T C ARL11 3'UTR 0.30 TCGA-EI-6917-01 13 50588056 50588056 G A TRIM13 3'Flank 0.24 TCGA-EI-6917-01 13 50589826 50589826 G A KCNRG Missense_Mutation p.R66K 0.27 deleterious(0) probably_damaging(0.955) TCGA-EI-6917-01 13 51544196 51544196 C T RNASEH2B 3'UTR 0.38 TCGA-EI-6917-01 13 51826250 51826250 C T FAM124A Silent p.L285L 0.17 TCGA-EI-6917-01 13 51921266 51921266 G A SERPINE3 Missense_Mutation p.R199Q 0.37 tolerated(1) benign(0.03) TCGA-EI-6917-01 13 52439603 52439603 C T CCDC70 Missense_Mutation p.A30V 0.30 tolerated(1) benign(0.001) TCGA-EI-6917-01 13 52599012 52599012 G T ALG11 Missense_Mutation p.K382N 0.20 tolerated(0.05) possibly_damaging(0.775) TCGA-EI-6917-01 13 52661488 52661488 C T NEK5 Missense_Mutation p.E460K 0.27 tolerated(0.29) benign(0.013) TCGA-EI-6917-01 13 60407365 60407365 G A DIAPH3 Missense_Mutation p.S968L 0.13 tolerated(0.17) benign(0.013) TCGA-EI-6917-01 13 60565310 60565310 C T DIAPH3 Missense_Mutation p.R448Q 0.33 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 13 60565365 60565365 C A DIAPH3 Nonsense_Mutation p.E430* 0.31 TCGA-EI-6917-01 13 61083960 61083960 G A TDRD3 Missense_Mutation p.A308T 0.25 deleterious(0.05) probably_damaging(1) TCGA-EI-6917-01 13 61985410 61985410 C T PCDH20 Missense_Mutation p.R941Q 0.29 deleterious_low_confidence(0.01) benign(0.122) TCGA-EI-6917-01 13 61985423 61985423 C A PCDH20 Missense_Mutation p.D937Y 0.30 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-EI-6917-01 13 61987190 61987190 C A PCDH20 Missense_Mutation p.D348Y 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 13 61988100 61988100 C T PCDH20 Splice_Site p.X45_splice 0.24 TCGA-EI-6917-01 13 67799987 67799987 C A PCDH9 Missense_Mutation p.E862D 0.24 tolerated(0.14) benign(0.398) TCGA-EI-6917-01 13 67800394 67800394 G A PCDH9 Missense_Mutation p.R727W 0.24 deleterious(0.01) probably_damaging(0.97) TCGA-EI-6917-01 13 67800748 67800748 G A PCDH9 Missense_Mutation p.L609F 0.13 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 13 73337650 73337650 C T DIS3 Missense_Mutation p.R689Q 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 13 73347916 73347916 C T DIS3 Missense_Mutation p.R382Q 0.26 deleterious(0.01) benign(0.021) TCGA-EI-6917-01 13 76374826 76374826 G A LMO7 5'UTR 0.23 TCGA-EI-6917-01 13 76395393 76395393 G A LMO7 Missense_Mutation p.R530Q 0.35 tolerated(0.4) benign(0.007) TCGA-EI-6917-01 13 76397728 76397728 G A LMO7 Missense_Mutation p.D657N 0.33 tolerated(0.28) benign(0.005) TCGA-EI-6917-01 13 77780955 77780955 C T MYCBP2 Missense_Mutation p.R1103Q 0.13 benign(0.002) TCGA-EI-6917-01 13 78133971 78133971 G A SCEL Missense_Mutation p.R65Q 0.16 tolerated(0.24) possibly_damaging(0.902) TCGA-EI-6917-01 13 79216254 79216254 T G RNF219 Intron 0.23 TCGA-EI-6917-01 13 84454170 84454170 G A SLITRK1 Silent p.F491F 0.13 TCGA-EI-6917-01 13 86368703 86368703 T C SLITRK6 Silent p.Q647Q 0.21 TCGA-EI-6917-01 13 88330434 88330434 G A SLITRK5 Missense_Mutation p.E931K 0.19 deleterious(0.01) possibly_damaging(0.838) TCGA-EI-6917-01 13 88331006 88331006 T G SLITRK5 3'UTR 0.26 TCGA-EI-6917-01 13 92003333 92003333 C T MIR17HG RNA 0.30 TCGA-EI-6917-01 13 95226938 95226938 G T TGDS 3'UTR 0.40 TCGA-EI-6917-01 13 96293553 96293553 T C DZIP1 Missense_Mutation p.Y198C 0.33 tolerated(0.07) possibly_damaging(0.838) TCGA-EI-6917-01 13 96412433 96412433 G A DNAJC3 Missense_Mutation p.S229N 0.26 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 13 97639027 97639027 C T OXGR1 Silent p.K329K 0.22 TCGA-EI-6917-01 13 98828564 98828564 C T RNF113B Silent p.A309A 0.23 TCGA-EI-6917-01 13 99092389 99092389 G T FARP1 Missense_Mutation p.E843D 0.30 deleterious(0.02) possibly_damaging(0.866) TCGA-EI-6917-01 13 99340522 99340522 T C SLC15A1 Missense_Mutation p.T555A 0.19 tolerated(0.07) possibly_damaging(0.542) TCGA-EI-6917-01 13 99358477 99358477 C T SLC15A1 Missense_Mutation p.E394K 0.23 tolerated(0.07) benign(0.329) TCGA-EI-6917-01 13 99449718 99449718 G A DOCK9 Missense_Mutation p.A1995V 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 13 99573214 99573214 G A DOCK9 Silent p.V237V 0.28 TCGA-EI-6917-01 14 100158180 100158180 G A CYP46A1 Silent p.T88T 0.37 TCGA-EI-6917-01 14 100317312 100317312 C T EML1 Missense_Mutation p.R64W 0.33 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 14 100374023 100374023 C A EML1 Missense_Mutation p.L372I 0.20 tolerated(0.2) possibly_damaging(0.832) TCGA-EI-6917-01 14 100531755 100531755 G C EVL 5'UTR 0.45 TCGA-EI-6917-01 14 100803526 100803526 G A WARS Missense_Mutation p.A376V 0.25 deleterious(0.01) possibly_damaging(0.845) TCGA-EI-6917-01 14 100847299 100847299 T C WDR25 Missense_Mutation p.V13A 0.34 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 14 101350611 101350611 G A RTL1 Missense_Mutation p.S172L 0.26 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 14 101491928 101491928 A G MIR1197 RNA 0.33 TCGA-EI-6917-01 14 101518815 101518815 C T MIR487A RNA 0.25 TCGA-EI-6917-01 14 101520662 101520662 C T MIR382 RNA 0.28 TCGA-EI-6917-01 14 101531976 101531976 C T MIR369 RNA 0.23 TCGA-EI-6917-01 14 101532281 101532281 C T MIR410 RNA 0.28 TCGA-EI-6917-01 14 102348517 102348517 G A PPP2R5C Missense_Mutation p.R136Q 0.39 deleterious(0.02) probably_damaging(0.991) TCGA-EI-6917-01 14 102729923 102729923 T C MOK Missense_Mutation p.I81M 0.14 deleterious(0.05) possibly_damaging(0.724) TCGA-EI-6917-01 14 102894633 102894633 C T TECPR2 Missense_Mutation p.S333L 0.24 deleterious(0) possibly_damaging(0.79) TCGA-EI-6917-01 14 103442046 103442046 G A CDC42BPB Silent p.I494I 0.27 TCGA-EI-6917-01 14 104038110 104038110 G T RP11-73M18.2 Nonsense_Mutation p.E105* 0.11 TCGA-EI-6917-01 14 104220458 104220458 G A PPP1R13B Missense_Mutation p.R194C 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 14 104245125 104245125 C A PPP1R13B Missense_Mutation p.R104I 0.23 deleterious(0) benign(0.174) TCGA-EI-6917-01 14 105405320 105405320 G A AHNAK2 Missense_Mutation p.L5490F 0.35 possibly_damaging(0.737) TCGA-EI-6917-01 14 105415429 105415429 T C AHNAK2 Missense_Mutation p.E2120G 0.44 benign(0.03) TCGA-EI-6917-01 14 105418653 105418653 G T AHNAK2 Missense_Mutation p.D1045E 0.24 benign(0.027) TCGA-EI-6917-01 14 105419192 105419192 C T AHNAK2 Missense_Mutation p.D866N 0.28 possibly_damaging(0.716) TCGA-EI-6917-01 14 105421062 105421062 G T AHNAK2 Silent p.L242L 0.27 TCGA-EI-6917-01 14 105716766 105716766 C A BTBD6 Missense_Mutation p.F405L 0.31 deleterious(0.04) possibly_damaging(0.654) TCGA-EI-6917-01 14 106109999 106109999 G A IGHG2 Missense_Mutation p.L207F 0.22 tolerated(0.16) probably_damaging(0.973) TCGA-EI-6917-01 14 106111047 106111047 G A IGHG2 Silent p.C27C 0.26 TCGA-EI-6917-01 14 106237543 106237543 G A IGHG3 Silent p.S67S 0.19 TCGA-EI-6917-01 14 106322032 106322032 C T IGHM Missense_Mutation p.E98K 0.27 tolerated(0.5) benign(0.006) TCGA-EI-6917-01 14 106845377 106845377 A C IGHV3-35 Nonsense_Mutation p.Y99* 0.17 TCGA-EI-6917-01 14 107218747 107218747 C T IGHV3-74 Missense_Mutation p.A94T 0.23 deleterious_low_confidence(0.04) benign(0.043) TCGA-EI-6917-01 14 19553789 19553789 G A POTEG Missense_Mutation p.D125N 0.05 tolerated(0.06) benign(0.055) TCGA-EI-6917-01 14 20215617 20215617 G T OR4Q3 Nonsense_Mutation p.E11* 0.27 TCGA-EI-6917-01 14 20296339 20296339 C A OR4N2 Silent p.I244I 0.16 TCGA-EI-6917-01 14 20404707 20404707 T C OR4K1 Silent p.V294V 0.16 TCGA-EI-6917-01 14 20528968 20528968 T G OR4L1 Missense_Mutation p.I255M 0.21 deleterious(0) probably_damaging(0.961) TCGA-EI-6917-01 14 20612336 20612336 C A OR4N5 Missense_Mutation p.L148M 0.20 tolerated(0.08) probably_damaging(0.925) TCGA-EI-6917-01 14 20692622 20692622 C T OR11H6 Nonsense_Mutation p.R252* 0.19 TCGA-EI-6917-01 14 20824535 20824535 T G PARP2 Missense_Mutation p.L404V 0.23 tolerated(1) benign(0.002) TCGA-EI-6917-01 14 21216002 21216002 G A EDDM3A Missense_Mutation p.R88Q 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-EI-6917-01 14 21238744 21238744 C T EDDM3B Silent p.I145I 0.19 TCGA-EI-6917-01 14 21238913 21238913 A G EDDM3B 3'UTR 0.16 TCGA-EI-6917-01 14 21360026 21360026 C T RNASE3 Nonsense_Mutation p.R61* 0.22 TCGA-EI-6917-01 14 21424098 21424098 C A RNASE2 Silent p.V56V 0.36 TCGA-EI-6917-01 14 21491045 21491045 C T NDRG2 Missense_Mutation p.R32Q 0.10 tolerated(0.57) benign(0.002) TCGA-EI-6917-01 14 21798510 21798510 G A RPGRIP1 Missense_Mutation p.A1068T 0.27 tolerated(0.07) benign(0.169) TCGA-EI-6917-01 14 21829059 21829059 G A SUPT16H Missense_Mutation p.R668C 0.23 deleterious(0) probably_damaging(0.958) TCGA-EI-6917-01 14 21837508 21837508 G A SUPT16H Nonsense_Mutation p.R213* 0.19 TCGA-EI-6917-01 14 21870588 21870588 G A CHD8 Silent p.Y1263Y 0.14 TCGA-EI-6917-01 14 21961335 21961335 G T TOX4 Missense_Mutation p.M520I 0.18 tolerated(0.19) benign(0) TCGA-EI-6917-01 14 21971454 21971454 G A METTL3 Silent p.V195V 0.16 TCGA-EI-6917-01 14 21993303 21993303 G A SALL2 Missense_Mutation p.R187W 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6917-01 14 23524356 23524356 G T CDH24 Missense_Mutation p.F136L 0.29 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 14 23846581 23846581 G A CMTM5 Missense_Mutation p.E41K 0.25 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 14 23863277 23863277 C T MYH6 Silent p.A895A 0.20 TCGA-EI-6917-01 14 23863328 23863328 C A MYH6 Missense_Mutation p.K878N 0.17 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 14 24658807 24658807 G T TM9SF1 Missense_Mutation p.F545L 0.24 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 14 24683287 24683287 C T MDP1 Silent p.A158A 0.30 TCGA-EI-6917-01 14 24683741 24683741 G T NEDD8-MDP1 Missense_Mutation p.H109N 0.29 tolerated(0.34) benign(0.025) TCGA-EI-6917-01 14 24780691 24780691 C T LTB4R2 Missense_Mutation p.T274M 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 14 24838822 24838822 C T NFATC4 Missense_Mutation p.S136L 0.34 deleterious(0.02) probably_damaging(0.986) TCGA-EI-6917-01 14 24845639 24845639 C T NFATC4 Silent p.C795C 0.23 TCGA-EI-6917-01 14 24884954 24884954 G A NYNRIN Silent p.S1333S 0.31 TCGA-EI-6917-01 14 25076894 25076894 A C GZMH Missense_Mutation p.F88C 0.27 deleterious(0.04) possibly_damaging(0.768) TCGA-EI-6917-01 14 25101145 25101145 G A GZMB Silent p.C173C 0.17 TCGA-EI-6917-01 14 26949194 26949194 G A NOVA1 Missense_Mutation p.R146C 0.26 deleterious(0) unknown(0) TCGA-EI-6917-01 14 29238441 29238441 G T FOXG1 3'UTR 0.33 TCGA-EI-6917-01 14 30100143 30100143 C T PRKD1 Missense_Mutation p.E493K 0.26 deleterious(0.04) probably_damaging(0.994) TCGA-EI-6917-01 14 30132966 30132966 A G PRKD1 Missense_Mutation p.V212A 0.18 tolerated(0.85) benign(0.002) TCGA-EI-6917-01 14 31077142 31077142 C A G2E3 Missense_Mutation p.S456Y 0.21 deleterious(0.02) benign(0.086) TCGA-EI-6917-01 14 31381364 31381364 G A STRN3 Nonsense_Mutation p.R467* 0.30 TCGA-EI-6917-01 14 31585632 31585632 C T HECTD1 Missense_Mutation p.E1810K 0.18 tolerated(0.34) probably_damaging(0.935) TCGA-EI-6917-01 14 31597894 31597894 C T HECTD1 Silent p.T1561T 0.19 TCGA-EI-6917-01 14 32563037 32563037 C T ARHGAP5 Silent p.L1054L 0.46 TCGA-EI-6917-01 14 34269487 34269487 C T NPAS3 Silent p.F658F 0.29 TCGA-EI-6917-01 14 35276665 35276665 T G BAZ1A Missense_Mutation p.K240Q 0.10 tolerated(0.1) benign(0.403) TCGA-EI-6917-01 14 35592871 35592871 C T KIAA0391 Silent p.F140F 0.31 TCGA-EI-6917-01 14 36005367 36005367 A C INSM2 3'UTR 0.28 TCGA-EI-6917-01 14 36005458 36005458 G A INSM2 3'UTR 0.23 TCGA-EI-6917-01 14 36840676 36840676 G A DPPA3P2 RNA 0.30 TCGA-EI-6917-01 14 38281561 38281561 G T TTC6 Nonsense_Mutation p.E1538* 0.30 TCGA-EI-6917-01 14 38679942 38679942 G T SSTR1 3'UTR 0.26 TCGA-EI-6917-01 14 38680132 38680132 G A SSTR1 3'UTR 0.22 TCGA-EI-6917-01 14 38724198 38724198 G A CLEC14A Missense_Mutation p.P344S 0.32 tolerated(0.13) benign(0.016) TCGA-EI-6917-01 14 39716868 39716868 G T MIA2 Missense_Mutation p.D364Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 14 39717006 39717006 G T MIA2 Nonsense_Mutation p.E410* 0.28 TCGA-EI-6917-01 14 39721982 39721982 G T MIA2 Missense_Mutation p.R533I 0.28 tolerated(0.07) benign(0.026) TCGA-EI-6917-01 14 44975550 44975550 C T FSCB Missense_Mutation p.S214N 0.24 tolerated(0.25) benign(0.015) TCGA-EI-6917-01 14 45403673 45403673 C A KLHL28 Missense_Mutation p.D330Y 0.33 deleterious(0.03) possibly_damaging(0.516) TCGA-EI-6917-01 14 45600000 45600000 G T FKBP3 Missense_Mutation p.L38I 0.26 deleterious(0) probably_damaging(0.948) TCGA-EI-6917-01 14 45636337 45636337 G A FANCM Missense_Mutation p.R658Q 0.14 tolerated(0.08) benign(0.011) TCGA-EI-6917-01 14 45667922 45667922 G A FANCM Missense_Mutation p.R1931Q 0.29 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 14 45675348 45675348 G A MIS18BP1 Missense_Mutation p.R1060C 0.26 deleterious(0) possibly_damaging(0.749) TCGA-EI-6917-01 14 47121000 47121000 C T RPL10L 5'UTR 0.28 TCGA-EI-6917-01 14 50266387 50266387 C A NEMF Missense_Mutation p.Q794H 0.18 tolerated(0.15) benign(0.002) TCGA-EI-6917-01 14 50298977 50298977 T C NEMF Missense_Mutation p.R252G 0.38 deleterious(0.02) benign(0.155) TCGA-EI-6917-01 14 50579334 50579334 G A VCPKMT Missense_Mutation p.S225L 0.19 tolerated_low_confidence(0.12) benign(0.009) TCGA-EI-6917-01 14 50735989 50735989 A C L2HGDH Missense_Mutation p.I266M 0.30 tolerated(0.08) benign(0.091) TCGA-EI-6917-01 14 50768809 50768809 A G L2HGDH Silent p.L112L 0.12 TCGA-EI-6917-01 14 50779702 50779702 T C ATP5S 5'UTR 0.38 TCGA-EI-6917-01 14 50846937 50846937 A C CDKL1 Intron 0.26 TCGA-EI-6917-01 14 51054798 51054798 T C ATL1 Splice_Site p.X94_splice 0.25 TCGA-EI-6917-01 14 51237142 51237142 C A NIN Missense_Mutation p.E466D 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 14 51288709 51288709 C T NIN Silent p.T22T 0.36 TCGA-EI-6917-01 14 51375596 51375596 G T PYGL Missense_Mutation p.S752Y 0.17 deleterious(0.01) benign(0.045) TCGA-EI-6917-01 14 51378726 51378726 G A PYGL Silent p.F599F 0.28 TCGA-EI-6917-01 14 51444001 51444001 G A TRIM9 3'UTR 0.20 TCGA-EI-6917-01 14 51445864 51445864 G T TRIM9 Intron 0.38 TCGA-EI-6917-01 14 51448627 51448627 G A TRIM9 Missense_Mutation p.R600C 0.16 deleterious(0) benign(0.112) TCGA-EI-6917-01 14 52179215 52179215 G T FRMD6 Missense_Mutation p.E265D 0.31 tolerated(0.13) benign(0.009) TCGA-EI-6917-01 14 52417415 52417415 G A GNG2 Missense_Mutation p.A7T 0.29 tolerated(0.52) benign(0.028) TCGA-EI-6917-01 14 52417471 52417471 C T GNG2 Silent p.I25I 0.28 TCGA-EI-6917-01 14 52472502 52472502 C T NID2 Missense_Mutation p.R1357Q 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-EI-6917-01 14 52520480 52520480 C T NID2 Missense_Mutation p.E416K 0.23 tolerated(0.64) benign(0.003) TCGA-EI-6917-01 14 53325085 53325085 G T FERMT2 3'UTR 0.25 TCGA-EI-6917-01 14 53518627 53518627 G A DDHD1 Missense_Mutation p.S819L 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.736) TCGA-EI-6917-01 14 55411082 55411082 G A WDHD1 Nonsense_Mutation p.R1053* 0.38 TCGA-EI-6917-01 14 55510690 55510690 C T SOCS4 Nonsense_Mutation p.R311* 0.21 TCGA-EI-6917-01 14 55510744 55510744 C T SOCS4 Missense_Mutation p.R329C 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 14 57085397 57085397 G A TMEM260 Missense_Mutation p.R381Q 0.32 tolerated(0.09) benign(0.003) TCGA-EI-6917-01 14 57675371 57675371 G A EXOC5 Missense_Mutation p.R695C 0.28 deleterious(0.02) probably_damaging(0.945) TCGA-EI-6917-01 14 58036550 58036550 G A SLC35F4 Missense_Mutation p.A397V 0.21 tolerated(0.57) benign(0.164) TCGA-EI-6917-01 14 58605373 58605373 G A C14orf37 Missense_Mutation p.S235F 0.19 tolerated(0.51) benign(0.002) TCGA-EI-6917-01 14 58606069 58606069 C A C14orf37 Missense_Mutation p.G3V 0.30 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 14 58698938 58698938 G A ACTR10 Missense_Mutation p.R342Q 0.41 tolerated(0.07) benign(0.042) TCGA-EI-6917-01 14 58896117 58896117 A C KIAA0586 Missense_Mutation p.Q91P 0.25 deleterious(0.05) probably_damaging(0.943) TCGA-EI-6917-01 14 59113639 59113639 C T DACT1 Silent p.F766F 0.28 TCGA-EI-6917-01 14 60194302 60194302 G A RTN1 Missense_Mutation p.S367L 0.27 deleterious(0) benign(0.049) TCGA-EI-6917-01 14 60581791 60581791 C A PCNXL4 Missense_Mutation p.F89L 0.26 deleterious(0.02) benign(0.033) TCGA-EI-6917-01 14 60903731 60903731 G T C14orf39 Silent p.G532G 0.25 TCGA-EI-6917-01 14 60921858 60921858 C T C14orf39 Missense_Mutation p.R455K 0.26 tolerated(0.21) benign(0.135) TCGA-EI-6917-01 14 60976655 60976655 G A SIX6 Missense_Mutation p.R180Q 0.22 deleterious(0) probably_damaging(0.984) TCGA-EI-6917-01 14 61187007 61187007 C A SIX4 Missense_Mutation p.K340N 0.21 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 14 62187122 62187122 G T HIF1A Nonsense_Mutation p.E44* 0.19 TCGA-EI-6917-01 14 63269215 63269215 G A KCNH5 Nonsense_Mutation p.R552* 0.20 TCGA-EI-6917-01 14 63416959 63416959 A G KCNH5 Missense_Mutation p.S421P 0.34 deleterious(0.01) possibly_damaging(0.66) TCGA-EI-6917-01 14 63757651 63757651 C T RHOJ Missense_Mutation p.A185V 0.20 tolerated(0.07) benign(0.164) TCGA-EI-6917-01 14 64152941 64152941 C T SGPP1 Missense_Mutation p.R403Q 0.31 deleterious(0.02) possibly_damaging(0.621) TCGA-EI-6917-01 14 64194242 64194242 C A SGPP1 Nonsense_Mutation p.E141* 0.40 TCGA-EI-6917-01 14 64468780 64468780 G A SYNE2 Missense_Mutation p.R1256H 0.25 benign(0) TCGA-EI-6917-01 14 64492012 64492012 A G SYNE2 Missense_Mutation p.E2042G 0.27 possibly_damaging(0.897) TCGA-EI-6917-01 14 64637085 64637085 C T SYNE2 Missense_Mutation p.R5714C 0.26 probably_damaging(0.96) TCGA-EI-6917-01 14 68217731 68217731 C A ZFYVE26 Intron 0.20 TCGA-EI-6917-01 14 70235601 70235601 G A SRSF5 Missense_Mutation p.R95Q 0.24 tolerated(0.39) benign(0.115) TCGA-EI-6917-01 14 70490028 70490028 G A SMOC1 Silent p.K385K 0.29 TCGA-EI-6917-01 14 70522530 70522530 G A SLC8A3 Missense_Mutation p.A630V 0.17 tolerated(0.18) benign(0.001) TCGA-EI-6917-01 14 70527578 70527578 C T SLC8A3 Silent p.P621P 0.20 TCGA-EI-6917-01 14 70530586 70530586 G T SLC8A3 Intron 0.23 TCGA-EI-6917-01 14 70712704 70712704 G T ADAM21P1 RNA 0.14 TCGA-EI-6917-01 14 71455316 71455316 C T PCNX Missense_Mutation p.R782C 0.25 deleterious(0.01) possibly_damaging(0.77) TCGA-EI-6917-01 14 71485796 71485796 C A PCNX Missense_Mutation p.L1023I 0.21 tolerated(0.05) probably_damaging(0.997) TCGA-EI-6917-01 14 71555976 71555976 C T PCNX Nonsense_Mutation p.R1836* 0.25 TCGA-EI-6917-01 14 72117181 72117181 C T SIPA1L1 Missense_Mutation p.R650W 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6917-01 14 72128040 72128040 G A SIPA1L1 Missense_Mutation p.R704Q 0.15 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 14 72128041 72128041 G A SIPA1L1 Silent p.R704R 0.23 TCGA-EI-6917-01 14 73220035 73220035 G A DPF3 Missense_Mutation p.R80C 0.20 deleterious(0) probably_damaging(0.942) TCGA-EI-6917-01 14 73554800 73554800 C T RBM25 Silent p.L158L 0.24 TCGA-EI-6917-01 14 73578341 73578341 G A RBM25 Missense_Mutation p.R708Q 0.25 benign(0.238) TCGA-EI-6917-01 14 74086181 74086181 G A ACOT6 Missense_Mutation p.E88K 0.23 tolerated(0.28) benign(0.023) TCGA-EI-6917-01 14 74404345 74404345 C T FAM161B Missense_Mutation p.R605Q 0.25 deleterious(0) possibly_damaging(0.546) TCGA-EI-6917-01 14 74407704 74407704 C T FAM161B Missense_Mutation p.G505D 0.17 deleterious(0.04) benign(0.059) TCGA-EI-6917-01 14 74759297 74759297 C T ABCD4 Missense_Mutation p.D329N 0.24 tolerated(0.09) benign(0.093) TCGA-EI-6917-01 14 74826039 74826039 C T VRTN 3'UTR 0.26 TCGA-EI-6917-01 14 74960982 74960982 T G ISCA2 Missense_Mutation p.L60R 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 14 74978059 74978059 C T LTBP2 Missense_Mutation p.E973K 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 14 75282966 75282966 C T YLPM1 Nonsense_Mutation p.R1855* 0.26 TCGA-EI-6917-01 14 75283637 75283637 A G YLPM1 Missense_Mutation p.M1897V 0.17 possibly_damaging(0.46) TCGA-EI-6917-01 14 75329380 75329380 C T PROX2 Intron 0.33 TCGA-EI-6917-01 14 75515307 75515307 T G MLH3 Missense_Mutation p.E351A 0.28 deleterious(0) possibly_damaging(0.804) TCGA-EI-6917-01 14 75516145 75516145 G A MLH3 Missense_Mutation p.R72C 0.21 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 14 76091013 76091013 G T FLVCR2 Missense_Mutation p.L290F 0.22 tolerated(0.1) benign(0.1) TCGA-EI-6917-01 14 76117839 76117839 G A C14orf1 3'UTR 0.27 TCGA-EI-6917-01 14 77896056 77896056 C T VIPAS39 Missense_Mutation p.E412K 0.39 deleterious(0.01) benign(0.244) TCGA-EI-6917-01 14 77904173 77904173 C A VIPAS39 Nonsense_Mutation p.E272* 0.27 TCGA-EI-6917-01 14 78177227 78177227 C T SLIRP Silent p.C48C 0.16 TCGA-EI-6917-01 14 78184866 78184866 T C SNW1 Missense_Mutation p.D419G 0.31 tolerated(0.08) benign(0.109) TCGA-EI-6917-01 14 78227395 78227395 G T C14orf178 Nonsense_Mutation p.E4* 0.27 TCGA-EI-6917-01 14 78374247 78374247 G T ADCK1 Missense_Mutation p.K281N 0.21 tolerated(0.55) benign(0.008) TCGA-EI-6917-01 14 80669283 80669283 G A DIO2 Nonsense_Mutation p.R227* 0.22 TCGA-EI-6917-01 14 81382873 81382873 C T CEP128 Missense_Mutation p.E7K 0.20 deleterious(0.01) benign(0.294) TCGA-EI-6917-01 14 86089067 86089067 G A FLRT2 Silent p.S403S 0.27 TCGA-EI-6917-01 14 86093012 86093012 G A FLRT2 3'UTR 0.29 TCGA-EI-6917-01 14 88477106 88477106 C T GPR65 5'UTR 0.28 TCGA-EI-6917-01 14 88654316 88654316 C A KCNK10 Nonsense_Mutation p.E336* 0.21 TCGA-EI-6917-01 14 88892973 88892973 G A SPATA7 Missense_Mutation p.R257H 0.08 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 14 88936376 88936376 C T PTPN21 Missense_Mutation p.E964K 0.31 tolerated(0.05) possibly_damaging(0.823) TCGA-EI-6917-01 14 89088968 89088968 G A EML5 Missense_Mutation p.R1665C 0.39 deleterious(0) benign(0.139) TCGA-EI-6917-01 14 89154718 89154718 G A EML5 Missense_Mutation p.S880F 0.23 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 14 90736595 90736595 C T PSMC1 Missense_Mutation p.R363C 0.10 tolerated(0.1) benign(0.003) TCGA-EI-6917-01 14 91110426 91110426 C T TTC7B Missense_Mutation p.D573N 0.37 tolerated(1) possibly_damaging(0.815) TCGA-EI-6917-01 14 91655447 91655447 C T C14orf159 Silent p.V376V 0.22 TCGA-EI-6917-01 14 91948134 91948134 C T SMEK1 Missense_Mutation p.R234Q 0.22 tolerated(0.06) benign(0.363) TCGA-EI-6917-01 14 92136180 92136180 A C CATSPERB Missense_Mutation p.F422C 0.31 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 14 92470812 92470812 C A TRIP11 Missense_Mutation p.D1170Y 0.28 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 14 92482108 92482108 C T TRIP11 Missense_Mutation p.R252Q 0.32 deleterious(0.04) benign(0.156) TCGA-EI-6917-01 14 93676263 93676263 T G RP11-371E8.4 Missense_Mutation p.C101G 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 14 93708987 93708987 G A BTBD7 Missense_Mutation p.L1011F 0.30 tolerated_low_confidence(0.09) benign(0.001) TCGA-EI-6917-01 14 93714872 93714872 G A BTBD7 Nonsense_Mutation p.R691* 0.31 TCGA-EI-6917-01 14 93760501 93760501 G A BTBD7 Nonsense_Mutation p.R289* 0.23 TCGA-EI-6917-01 14 93814599 93814599 G T COX8C 3'UTR 0.46 TCGA-EI-6917-01 14 94044269 94044269 C T UNC79 Missense_Mutation p.R588W 0.23 tolerated(0.07) possibly_damaging(0.685) TCGA-EI-6917-01 14 94052963 94052963 G T UNC79 Missense_Mutation p.R765I 0.30 deleterious(0.04) benign(0.413) TCGA-EI-6917-01 14 94088784 94088784 C A UNC79 Missense_Mutation p.F1558L 0.24 tolerated_low_confidence(0.94) benign(0.001) TCGA-EI-6917-01 14 94395495 94395495 C A FAM181A Silent p.V350V 0.30 TCGA-EI-6917-01 14 94594266 94594266 G A IFI27L2 Missense_Mutation p.A88V 0.31 deleterious(0.01) probably_damaging(0.918) TCGA-EI-6917-01 14 94700055 94700055 T C PPP4R4 Silent p.C194C 0.23 TCGA-EI-6917-01 14 94750315 94750315 G A SERPINA10 Missense_Mutation p.P441L 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 14 94750340 94750340 G T SERPINA10 Missense_Mutation p.L433M 0.31 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 14 94756237 94756237 G T SERPINA10 Missense_Mutation p.L232I 0.24 deleterious(0.01) possibly_damaging(0.541) TCGA-EI-6917-01 14 95234789 95234789 C T GSC 3'UTR 0.20 TCGA-EI-6917-01 14 95560459 95560459 C T DICER1 Silent p.A1710A 0.15 TCGA-EI-6917-01 14 95572100 95572100 C T DICER1 Missense_Mutation p.R1003Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 14 95670749 95670749 G A CLMN Missense_Mutation p.R313C 0.22 deleterious(0) probably_damaging(0.915) TCGA-EI-6917-01 14 95884239 95884239 C T SYNE3 Missense_Mutation p.R951H 0.35 tolerated(0.63) benign(0.031) TCGA-EI-6917-01 14 95898455 95898455 C A SYNE3 Splice_Site p.X897_splice 0.29 TCGA-EI-6917-01 14 96731052 96731052 G T BDKRB1 Nonsense_Mutation p.E345* 0.29 TCGA-EI-6917-01 14 96761871 96761871 G T ATG2B Missense_Mutation p.F1722L 0.23 deleterious(0) probably_damaging(0.931) TCGA-EI-6917-01 14 96875239 96875239 G A AK7 Silent p.S153S 0.32 TCGA-EI-6917-01 14 96993812 96993812 G A PAPOLA Missense_Mutation p.R126Q 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 14 97022596 97022596 C A PAPOLA Missense_Mutation p.S617Y 0.27 deleterious(0.02) benign(0.44) TCGA-EI-6917-01 14 99642477 99642477 G A BCL11B Silent p.S232S 0.19 TCGA-EI-6917-01 14 99723868 99723868 C T BCL11B Missense_Mutation p.E123K 0.37 deleterious(0.01) benign(0.097) TCGA-EI-6917-01 15 101427829 101427829 C T ALDH1A3 Missense_Mutation p.S86L 0.15 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 101434154 101434154 C T ALDH1A3 Intron 0.13 TCGA-EI-6917-01 15 101434285 101434285 G T ALDH1A3 Nonsense_Mutation p.E222* 0.19 TCGA-EI-6917-01 15 101447462 101447462 C T ALDH1A3 Missense_Mutation p.A457V 0.24 deleterious(0.01) probably_damaging(0.975) TCGA-EI-6917-01 15 101595262 101595262 C T LRRK1 Missense_Mutation p.S1389L 0.36 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 15 101608987 101608987 C T LRRK1 Silent p.F1994F 0.18 TCGA-EI-6917-01 15 102358621 102358621 G A OR4F15 Missense_Mutation p.A78T 0.27 tolerated_low_confidence(0.76) benign(0.019) TCGA-EI-6917-01 15 21071248 21071248 G A POTEB2 Silent p.I121I 0.13 TCGA-EI-6917-01 15 22382775 22382775 C A OR4N4 Silent p.L101L 0.17 TCGA-EI-6917-01 15 22742711 22742711 C T GOLGA6L1 Missense_Mutation p.R366W 0.19 unknown(0) TCGA-EI-6917-01 15 22840328 22840328 A C TUBGCP5 Missense_Mutation p.N132H 0.27 tolerated(0.12) benign(0.089) TCGA-EI-6917-01 15 23002903 23002903 C T CYFIP1 Missense_Mutation p.R1209C 0.36 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 15 23006363 23006363 C T NIPA2 Missense_Mutation p.R314Q 0.14 tolerated(0.3) benign(0.018) TCGA-EI-6917-01 15 23012407 23012407 C A NIPA2 Missense_Mutation p.R107I 0.30 deleterious(0.02) possibly_damaging(0.493) TCGA-EI-6917-01 15 23048925 23048925 G T NIPA1 Missense_Mutation p.F298L 0.20 tolerated(0.09) benign(0.139) TCGA-EI-6917-01 15 23198669 23198669 C A WHAMMP3 RNA 0.21 TCGA-EI-6917-01 15 23326048 23326048 C T HERC2P2 RNA 0.22 TCGA-EI-6917-01 15 23812384 23812384 A G MKRN3 Silent p.L485L 0.25 TCGA-EI-6917-01 15 24925934 24925934 C T NPAP1 3'UTR 0.34 TCGA-EI-6917-01 15 24926050 24926050 G T NPAP1 3'UTR 0.24 TCGA-EI-6917-01 15 24927460 24927460 T G NPAP1 3'UTR 0.26 TCGA-EI-6917-01 15 25616254 25616254 C T UBE3A Missense_Mutation p.R359Q 0.21 tolerated(0.56) benign(0.012) TCGA-EI-6917-01 15 25616494 25616494 C T UBE3A Missense_Mutation p.R279Q 0.24 tolerated(0.6) benign(0.007) TCGA-EI-6917-01 15 25616921 25616921 G T UBE3A Missense_Mutation p.L137I 0.24 tolerated(0.76) benign(0.006) TCGA-EI-6917-01 15 26806090 26806090 C T GABRB3 Missense_Mutation p.E357K 0.23 tolerated(0.29) benign(0.327) TCGA-EI-6917-01 15 27114483 27114483 T C GABRA5 Splice_Site p.X29_splice 0.22 TCGA-EI-6917-01 15 28171291 28171291 C T OCA2 Silent p.A687A 0.27 TCGA-EI-6917-01 15 28377391 28377391 C T HERC2 Missense_Mutation p.G4142D 0.26 benign(0.317) TCGA-EI-6917-01 15 28431765 28431765 G A HERC2 Missense_Mutation p.S2928L 0.22 benign(0.406) TCGA-EI-6917-01 15 28441389 28441389 C T HERC2 Silent p.R2744R 0.29 TCGA-EI-6917-01 15 28478589 28478589 C T HERC2 Silent p.S1490S 0.23 TCGA-EI-6917-01 15 30012174 30012174 T C TJP1 Missense_Mutation p.N937S 0.26 tolerated_low_confidence(0.36) benign(0.002) TCGA-EI-6917-01 15 31334387 31334387 G A TRPM1 Silent p.I635I 0.23 TCGA-EI-6917-01 15 31823009 31823009 G A OTUD7A Missense_Mutation p.R185C 0.25 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 15 32929730 32929730 C A ARHGAP11A Nonsense_Mutation p.S919* 0.42 TCGA-EI-6917-01 15 33025524 33025524 A G GREM1 3'UTR 0.23 TCGA-EI-6917-01 15 33026425 33026425 T C GREM1 3'UTR 0.28 TCGA-EI-6917-01 15 33194122 33194122 C T FMN1 Missense_Mutation p.R943Q 0.20 tolerated(0.12) possibly_damaging(0.594) TCGA-EI-6917-01 15 33218437 33218437 C T FMN1 Missense_Mutation p.R832Q 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 33261622 33261622 C T FMN1 Silent p.A537A 0.26 TCGA-EI-6917-01 15 33878265 33878265 G A RYR3 Missense_Mutation p.G579D 0.31 benign(0.009) TCGA-EI-6917-01 15 33916126 33916126 G T RYR3 Nonsense_Mutation p.E826* 0.33 TCGA-EI-6917-01 15 34113011 34113011 G A RYR3 Missense_Mutation p.E3605K 0.22 benign(0.083) TCGA-EI-6917-01 15 34150071 34150071 G A RYR3 Missense_Mutation p.E4700K 0.26 benign(0.156) TCGA-EI-6917-01 15 34163195 34163195 G A AVEN Nonsense_Mutation p.R185* 0.27 TCGA-EI-6917-01 15 34394944 34394944 G A PGBD4 Missense_Mutation p.R71H 0.15 tolerated_low_confidence(0.14) benign(0.007) TCGA-EI-6917-01 15 34657420 34657420 G A LPCAT4 Silent p.C89C 0.38 TCGA-EI-6917-01 15 35045028 35045028 C T GJD2 Missense_Mutation p.R206Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 35174815 35174815 C T AQR Missense_Mutation p.R1018Q 0.21 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 15 35202393 35202393 G A AQR Missense_Mutation p.R536C 0.28 deleterious(0.03) possibly_damaging(0.743) TCGA-EI-6917-01 15 35274358 35274358 T G ZNF770 Missense_Mutation p.E426D 0.29 tolerated(0.08) benign(0.197) TCGA-EI-6917-01 15 35274364 35274364 C T ZNF770 Silent p.T424T 0.20 TCGA-EI-6917-01 15 35275046 35275046 A C ZNF770 Missense_Mutation p.F197C 0.18 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 35529664 35529664 C A ANP32AP1 RNA 0.27 TCGA-EI-6917-01 15 35530067 35530067 G A ANP32AP1 RNA 0.25 TCGA-EI-6917-01 15 37186933 37186933 C T MEIS2 Intron 0.24 TCGA-EI-6917-01 15 37385865 37385865 C T MEIS2 Missense_Mutation p.D186N 0.22 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 15 38756343 38756343 C A FAM98B Nonsense_Mutation p.S61* 0.25 TCGA-EI-6917-01 15 38773558 38773558 G A FAM98B Silent p.T265T 0.25 TCGA-EI-6917-01 15 39893117 39893117 C T FSIP1 Silent p.E570E 0.26 TCGA-EI-6917-01 15 40259920 40259920 C T EIF2AK4 Missense_Mutation p.R465C 0.32 deleterious(0) probably_damaging(0.957) TCGA-EI-6917-01 15 40311297 40311297 C T EIF2AK4 Missense_Mutation p.P1357S 0.39 tolerated(1) benign(0.03) TCGA-EI-6917-01 15 40590099 40590099 G A PLCB2 Missense_Mutation p.S406L 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 40594347 40594347 G A PLCB2 Missense_Mutation p.P166S 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 40913618 40913618 A G CASC5 Missense_Mutation p.T412A 0.21 deleterious(0.03) benign(0.307) TCGA-EI-6917-01 15 40916649 40916649 G A CASC5 Missense_Mutation p.R1422Q 0.26 tolerated(1) benign(0.001) TCGA-EI-6917-01 15 40921506 40921506 C A CASC5 Missense_Mutation p.F1899L 0.19 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 40949567 40949567 C A CASC5 Missense_Mutation p.F2229L 0.23 tolerated(0.58) benign(0.001) TCGA-EI-6917-01 15 41063032 41063032 G A C15orf62 Silent p.A113A 0.21 TCGA-EI-6917-01 15 41064629 41064629 G T C15orf62 3'UTR 0.14 TCGA-EI-6917-01 15 41554986 41554986 G A CHP1 Missense_Mutation p.R85Q 0.27 tolerated(0.09) benign(0.053) TCGA-EI-6917-01 15 41570972 41570972 G A CHP1 Missense_Mutation p.R140H 0.20 tolerated(0.32) benign(0.002) TCGA-EI-6917-01 15 41757053 41757053 G T RTF1 Missense_Mutation p.K249N 0.20 tolerated(0.38) possibly_damaging(0.621) TCGA-EI-6917-01 15 41763432 41763432 G A RTF1 Missense_Mutation p.R363Q 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-EI-6917-01 15 41861142 41861142 G A TYRO3 Missense_Mutation p.V392I 0.16 tolerated(0.67) benign(0.006) TCGA-EI-6917-01 15 42000403 42000403 G T MGA Nonsense_Mutation p.E808* 0.25 TCGA-EI-6917-01 15 42436661 42436661 G A PLA2G4F Silent p.F654F 0.24 TCGA-EI-6917-01 15 42742849 42742849 T C ZNF106 Missense_Mutation p.K518E 0.32 deleterious(0.04) benign(0.011) TCGA-EI-6917-01 15 42744102 42744102 C T ZNF106 Missense_Mutation p.R100Q 0.15 tolerated(0.19) benign(0.009) TCGA-EI-6917-01 15 42839521 42839521 G A LRRC57 Nonsense_Mutation p.R144* 0.19 TCGA-EI-6917-01 15 43527907 43527907 G A TGM5 Missense_Mutation p.R492W 0.29 tolerated(0.09) benign(0.01) TCGA-EI-6917-01 15 43533185 43533185 A C TGM5 Missense_Mutation p.M289R 0.21 deleterious(0.02) possibly_damaging(0.873) TCGA-EI-6917-01 15 43579492 43579492 G T TGM7 Missense_Mutation p.S284Y 0.16 deleterious(0) possibly_damaging(0.879) TCGA-EI-6917-01 15 43749297 43749297 C A TP53BP1 Missense_Mutation p.K503N 0.29 tolerated(0.11) probably_damaging(0.913) TCGA-EI-6917-01 15 43814361 43814361 G A MAP1A Silent p.V230V 0.30 TCGA-EI-6917-01 15 43817754 43817754 G A MAP1A Silent p.E1361E 0.26 TCGA-EI-6917-01 15 44120321 44120321 G T WDR76 Missense_Mutation p.K73N 0.24 tolerated(0.2) benign(0.015) TCGA-EI-6917-01 15 44888397 44888397 C T SPG11 Missense_Mutation p.D1440N 0.36 tolerated(0.19) probably_damaging(0.982) TCGA-EI-6917-01 15 44900694 44900694 C T SPG11 Missense_Mutation p.C1134Y 0.08 tolerated(1) probably_damaging(0.919) TCGA-EI-6917-01 15 45007743 45007743 G T B2M Nonsense_Mutation p.E64* 0.27 TCGA-EI-6917-01 15 45007818 45007818 G T B2M Nonsense_Mutation p.E89* 0.27 TCGA-EI-6917-01 15 45270938 45270938 T G C15orf43 3'UTR 0.38 TCGA-EI-6917-01 15 45402093 45402093 G A DUOX2 Missense_Mutation p.R376W 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 45436349 45436349 G A DUOX1 Silent p.Q684Q 0.40 TCGA-EI-6917-01 15 45557352 45557352 C A SLC28A2 Silent p.V256V 0.21 TCGA-EI-6917-01 15 45965849 45965849 G A SQRDL Silent p.S168S 0.25 TCGA-EI-6917-01 15 48495274 48495274 G T CTXN2 3'UTR 0.23 TCGA-EI-6917-01 15 48495407 48495407 C T CTXN2 3'UTR 0.24 TCGA-EI-6917-01 15 48633635 48633635 C A DUT Intron 0.21 TCGA-EI-6917-01 15 48752468 48752468 G A FBN1 Silent p.I1757I 0.10 TCGA-EI-6917-01 15 48760266 48760266 C T FBN1 Missense_Mutation p.R1539Q 0.19 benign(0.001) TCGA-EI-6917-01 15 48779290 48779290 C T FBN1 Missense_Mutation p.D1191N 0.39 benign(0.08) TCGA-EI-6917-01 15 48802284 48802284 A G FBN1 Silent p.C557C 0.31 TCGA-EI-6917-01 15 48892414 48892414 G A FBN1 Missense_Mutation p.R122C 0.27 probably_damaging(0.993) TCGA-EI-6917-01 15 49048485 49048485 C T CEP152 Missense_Mutation p.R987Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 49170791 49170791 G T EID1 Nonsense_Mutation p.E140* 0.30 TCGA-EI-6917-01 15 49170860 49170860 G A EID1 Missense_Mutation p.E163K 0.16 tolerated(0.42) possibly_damaging(0.823) TCGA-EI-6917-01 15 49254728 49254728 G A SHC4 Missense_Mutation p.S162L 0.14 tolerated(0.27) benign(0.008) TCGA-EI-6917-01 15 49800465 49800465 C T FAM227B Missense_Mutation p.A319T 0.24 tolerated(0.54) benign(0.011) TCGA-EI-6917-01 15 50288950 50288950 C T ATP8B4 Silent p.T171T 0.26 TCGA-EI-6917-01 15 50535417 50535417 C A HDC Nonsense_Mutation p.E389* 0.25 TCGA-EI-6917-01 15 50838790 50838790 C T USP50 5'UTR 0.33 TCGA-EI-6917-01 15 50853889 50853889 G A TRPM7 Missense_Mutation p.R1862C 0.23 deleterious_low_confidence(0) possibly_damaging(0.53) TCGA-EI-6917-01 15 50868036 50868036 C T TRPM7 Intron 0.13 TCGA-EI-6917-01 15 50884335 50884335 C T TRPM7 Missense_Mutation p.R1366Q 0.42 tolerated_low_confidence(0.08) benign(0.005) TCGA-EI-6917-01 15 50885830 50885830 G T TRPM7 Missense_Mutation p.R1198S 0.37 deleterious(0) probably_damaging(0.965) TCGA-EI-6917-01 15 50902041 50902041 C T TRPM7 Missense_Mutation p.E800K 0.23 tolerated(0.22) possibly_damaging(0.614) TCGA-EI-6917-01 15 50905911 50905911 C T TRPM7 Missense_Mutation p.R588Q 0.19 deleterious(0.03) benign(0.044) TCGA-EI-6917-01 15 51240236 51240236 G T AP4E1 Missense_Mutation p.R399I 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 51758502 51758502 G T DMXL2 Missense_Mutation p.L2467I 0.21 tolerated(0.13) probably_damaging(0.999) TCGA-EI-6917-01 15 51783791 51783791 C T DMXL2 Missense_Mutation p.R1646Q 0.41 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 51791854 51791854 C T DMXL2 Silent p.A1189A 0.21 TCGA-EI-6917-01 15 51980593 51980593 C A SCG3 Silent p.L178L 0.31 TCGA-EI-6917-01 15 52246741 52246741 C T LEO1 Missense_Mutation p.R426Q 0.21 tolerated(0.06) benign(0.023) TCGA-EI-6917-01 15 52338525 52338525 G T MAPK6 5'UTR 0.36 TCGA-EI-6917-01 15 52605799 52605799 C A MYO5A 3'UTR 0.42 TCGA-EI-6917-01 15 52901567 52901567 G A FAM214A Missense_Mutation p.S515L 0.22 tolerated(0.28) benign(0.005) TCGA-EI-6917-01 15 53907856 53907856 G A WDR72 Silent p.C849C 0.25 TCGA-EI-6917-01 15 54006666 54006666 C A WDR72 Missense_Mutation p.V186L 0.24 deleterious(0) possibly_damaging(0.529) TCGA-EI-6917-01 15 54306593 54306593 G A UNC13C Missense_Mutation p.S498N 0.25 tolerated_low_confidence(0.28) benign(0.001) TCGA-EI-6917-01 15 54557559 54557559 C A UNC13C Missense_Mutation p.S1228Y 0.26 deleterious(0) possibly_damaging(0.879) TCGA-EI-6917-01 15 55652969 55652969 C A CCPG1 Missense_Mutation p.Q334H 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 55664020 55664020 G A CCPG1 Missense_Mutation p.A226V 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6917-01 15 55839042 55839042 T C PYGO1 Missense_Mutation p.N147D 0.15 tolerated(0.05) benign(0.339) TCGA-EI-6917-01 15 56216855 56216855 C T NEDD4 Missense_Mutation p.E94K 0.31 deleterious(0.05) probably_damaging(0.972) TCGA-EI-6917-01 15 56686907 56686907 G T TEX9 Missense_Mutation p.D235Y 0.18 deleterious(0) possibly_damaging(0.671) TCGA-EI-6917-01 15 56756307 56756307 C A MNS1 Missense_Mutation p.D48Y 0.32 deleterious(0) benign(0.429) TCGA-EI-6917-01 15 56961059 56961059 T G ZNF280D Missense_Mutation p.K503Q 0.23 deleterious(0) probably_damaging(0.984) TCGA-EI-6917-01 15 56968918 56968918 T G ZNF280D Missense_Mutation p.K454Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 15 56993194 56993194 T C ZNF280D Missense_Mutation p.I106M 0.22 deleterious(0.02) benign(0.174) TCGA-EI-6917-01 15 57731330 57731330 T G CGNL1 Missense_Mutation p.I378S 0.14 deleterious(0) probably_damaging(0.917) TCGA-EI-6917-01 15 57732647 57732647 C A CGNL1 Missense_Mutation p.L559I 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-EI-6917-01 15 58476174 58476174 T C AQP9 Missense_Mutation p.F243S 0.25 deleterious(0) probably_damaging(0.972) TCGA-EI-6917-01 15 58830636 58830636 C T LIPC Nonsense_Mutation p.R65* 0.30 TCGA-EI-6917-01 15 59323719 59323719 T G RNF111 Nonsense_Mutation p.L233* 0.33 TCGA-EI-6917-01 15 59359251 59359251 A C RNF111 Missense_Mutation p.N552T 0.33 tolerated_low_confidence(0.93) benign(0.1) TCGA-EI-6917-01 15 59499375 59499375 C T LDHAL6B Missense_Mutation p.S79L 0.33 tolerated(0.07) benign(0.081) TCGA-EI-6917-01 15 59500187 59500187 A G LDHAL6B Missense_Mutation p.T350A 0.20 tolerated(0.2) benign(0.032) TCGA-EI-6917-01 15 59934438 59934438 G T GTF2A2 Missense_Mutation p.F67L 0.11 tolerated(0.16) possibly_damaging(0.501) TCGA-EI-6917-01 15 60797801 60797801 G A RORA Missense_Mutation p.S316L 0.20 deleterious(0) possibly_damaging(0.65) TCGA-EI-6917-01 15 60907117 60907117 A C RORA Intron 0.26 TCGA-EI-6917-01 15 60919495 60919495 G A RORA Nonsense_Mutation p.R27* 0.24 TCGA-EI-6917-01 15 62147104 62147104 C T VPS13C Missense_Mutation p.R3709Q 0.24 tolerated(0.07) benign(0.006) TCGA-EI-6917-01 15 62202413 62202413 C T VPS13C Missense_Mutation p.R2936Q 0.23 tolerated(0.31) benign(0.023) TCGA-EI-6917-01 15 62217669 62217669 C A VPS13C Nonsense_Mutation p.E2199* 0.20 TCGA-EI-6917-01 15 62233987 62233987 C T VPS13C Missense_Mutation p.E1810K 0.21 tolerated(0.93) benign(0.069) TCGA-EI-6917-01 15 62299515 62299515 C A VPS13C Nonsense_Mutation p.E428* 0.14 TCGA-EI-6917-01 15 62362768 62362768 C T C2CD4A 3'UTR 0.26 TCGA-EI-6917-01 15 63030448 63030448 C T TLN2 Silent p.C1201C 0.19 TCGA-EI-6917-01 15 63040640 63040640 C T TLN2 Silent p.L1372L 0.38 TCGA-EI-6917-01 15 63419807 63419807 G A LACTB Missense_Mutation p.E291K 0.28 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 15 63937790 63937790 G A HERC1 Missense_Mutation p.S3657L 0.31 benign(0.007) TCGA-EI-6917-01 15 63944707 63944707 G T HERC1 Missense_Mutation p.L3442I 0.24 probably_damaging(0.997) TCGA-EI-6917-01 15 63984649 63984649 C T HERC1 Missense_Mutation p.E1931K 0.23 possibly_damaging(0.725) TCGA-EI-6917-01 15 64010840 64010840 C T HERC1 Missense_Mutation p.R1304Q 0.33 possibly_damaging(0.849) TCGA-EI-6917-01 15 64496768 64496768 G A CSNK1G1 Nonsense_Mutation p.R291* 0.26 TCGA-EI-6917-01 15 64972919 64972919 C T ZNF609 Silent p.S1340S 0.16 TCGA-EI-6917-01 15 65370204 65370204 G A KBTBD13 Missense_Mutation p.D351N 0.16 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 15 65412218 65412218 G A PDCD7 Missense_Mutation p.R362C 0.17 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 65497801 65497801 G A CILP Missense_Mutation p.S143F 0.32 deleterious(0.02) probably_damaging(0.996) TCGA-EI-6917-01 15 65687537 65687537 G A IGDCC4 Missense_Mutation p.R491W 0.32 deleterious(0.01) possibly_damaging(0.901) TCGA-EI-6917-01 15 65916476 65916476 C T SLC24A1 Missense_Mutation p.L20F 0.16 possibly_damaging(0.86) TCGA-EI-6917-01 15 65916810 65916810 G A SLC24A1 Missense_Mutation p.S131N 0.25 possibly_damaging(0.483) TCGA-EI-6917-01 15 66386803 66386803 G A MEGF11 Missense_Mutation p.R111C 0.22 deleterious(0) benign(0.277) TCGA-EI-6917-01 15 66411436 66411436 C A MEGF11 Missense_Mutation p.D97Y 0.24 deleterious(0.01) possibly_damaging(0.67) TCGA-EI-6917-01 15 66727483 66727483 G A MAP2K1 Missense_Mutation p.D67N 0.28 tolerated(0.06) benign(0.057) TCGA-EI-6917-01 15 67681216 67681216 G A IQCH Missense_Mutation p.E502K 0.29 deleterious(0) possibly_damaging(0.563) TCGA-EI-6917-01 15 67692631 67692631 G T IQCH Missense_Mutation p.K695N 0.17 deleterious(0.01) probably_damaging(0.946) TCGA-EI-6917-01 15 67713723 67713723 G A IQCH Silent p.S771S 0.39 TCGA-EI-6917-01 15 68378717 68378717 G A PIAS1 Missense_Mutation p.R33H 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-EI-6917-01 15 68583077 68583077 G A FEM1B Missense_Mutation p.E461K 0.31 tolerated(0.49) benign(0.078) TCGA-EI-6917-01 15 68612655 68612655 G T ITGA11 Silent p.V828V 0.23 TCGA-EI-6917-01 15 68628164 68628164 G A ITGA11 Silent p.V432V 0.40 TCGA-EI-6917-01 15 69561313 69561313 A C GLCE Missense_Mutation p.E528D 0.22 tolerated(0.58) benign(0.01) TCGA-EI-6917-01 15 70964303 70964303 C T UACA Splice_Site p.X390_splice 0.21 TCGA-EI-6917-01 15 71300910 71300910 C T LRRC49 Silent p.I459I 0.27 TCGA-EI-6917-01 15 72040882 72040882 C T THSD4 Silent p.C788C 0.21 TCGA-EI-6917-01 15 72231198 72231198 G T MYO9A Missense_Mutation p.N791K 0.24 tolerated(0.88) benign(0.065) TCGA-EI-6917-01 15 72548901 72548901 C T PARP6 Missense_Mutation p.A344T 0.23 deleterious(0) possibly_damaging(0.851) TCGA-EI-6917-01 15 72691082 72691082 G A TMEM202 Missense_Mutation p.R57Q 0.21 deleterious(0.03) benign(0.372) TCGA-EI-6917-01 15 72699537 72699537 G T TMEM202 Missense_Mutation p.D200Y 0.28 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 15 72700177 72700177 G T TMEM202 Missense_Mutation p.E255D 0.12 tolerated(0.21) benign(0.003) TCGA-EI-6917-01 15 72855816 72855816 C T ARIH1 Missense_Mutation p.R296C 0.20 tolerated(0.05) possibly_damaging(0.892) TCGA-EI-6917-01 15 72954889 72954889 C T GOLGA6B Nonsense_Mutation p.R382* 0.39 TCGA-EI-6917-01 15 73021961 73021961 G A BBS4 Missense_Mutation p.G216D 0.27 deleterious(0.05) probably_damaging(0.938) TCGA-EI-6917-01 15 73590697 73590697 C T NEO1 Nonsense_Mutation p.R1304* 0.21 TCGA-EI-6917-01 15 73889441 73889441 C T NPTN Missense_Mutation p.D121N 0.23 deleterious(0.02) possibly_damaging(0.784) TCGA-EI-6917-01 15 74428334 74428334 C T ISLR2 3'UTR 0.23 TCGA-EI-6917-01 15 74428710 74428710 G A ISLR2 3'UTR 0.30 TCGA-EI-6917-01 15 74554781 74554781 G A CCDC33 Silent p.V62V 0.45 TCGA-EI-6917-01 15 74922293 74922293 C T CLK3 3'UTR 0.25 TCGA-EI-6917-01 15 75014802 75014802 C A CYP1A1 Nonsense_Mutation p.E213* 0.21 TCGA-EI-6917-01 15 75014822 75014822 C T CYP1A1 Missense_Mutation p.R206H 0.31 tolerated(0.13) benign(0.02) TCGA-EI-6917-01 15 75647555 75647555 A C NEIL1 3'UTR 0.22 TCGA-EI-6917-01 15 75694278 75694278 C T SIN3A Missense_Mutation p.E481K 0.16 deleterious(0) benign(0.233) TCGA-EI-6917-01 15 75705331 75705331 C T SIN3A Missense_Mutation p.D177N 0.16 deleterious(0.02) benign(0.158) TCGA-EI-6917-01 15 75941617 75941617 C T SNX33 Silent p.I58I 0.27 TCGA-EI-6917-01 15 77021068 77021068 C A SCAPER Missense_Mutation p.R678I 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 77134230 77134230 C A SCAPER Missense_Mutation p.D80Y 0.25 deleterious(0) possibly_damaging(0.837) TCGA-EI-6917-01 15 77907976 77907976 G A LINGO1 Silent p.F91F 0.26 TCGA-EI-6917-01 15 78633459 78633459 G A CRABP1 Missense_Mutation p.D49N 0.18 tolerated(0.08) possibly_damaging(0.669) TCGA-EI-6917-01 15 78780084 78780084 C T IREB2 Silent p.I573I 0.23 TCGA-EI-6917-01 15 78882935 78882935 G A CHRNA5 Missense_Mutation p.R401H 0.16 tolerated(0.2) benign(0.035) TCGA-EI-6917-01 15 78885499 78885499 C T CHRNA3 3'Flank 0.30 TCGA-EI-6917-01 15 78888990 78888990 C T CHRNA3 Missense_Mutation p.A492T 0.18 tolerated(0.13) probably_damaging(0.957) TCGA-EI-6917-01 15 79063576 79063576 C T ADAMTS7 Missense_Mutation p.D816N 0.33 tolerated(1) benign(0.001) TCGA-EI-6917-01 15 79339251 79339251 G A RASGRF1 Missense_Mutation p.R239C 0.33 deleterious(0) probably_damaging(0.968) TCGA-EI-6917-01 15 79588300 79588300 G T ANKRD34C 3'UTR 0.29 TCGA-EI-6917-01 15 79588427 79588427 C T ANKRD34C 3'UTR 0.27 TCGA-EI-6917-01 15 79749776 79749776 G A KIAA1024 Silent p.A429A 0.20 TCGA-EI-6917-01 15 80253350 80253350 C T BCL2A1 3'UTR 0.27 TCGA-EI-6917-01 15 80855474 80855474 C T ARNT2 Missense_Mutation p.R404C 0.10 deleterious(0) probably_damaging(0.911) TCGA-EI-6917-01 15 81046694 81046694 G A ABHD17C Missense_Mutation p.E325K 0.23 deleterious(0.05) benign(0.298) TCGA-EI-6917-01 15 81176623 81176623 G A KIAA1199 Missense_Mutation p.R242Q 0.27 deleterious(0.05) benign(0.016) TCGA-EI-6917-01 15 81199146 81199146 C A KIAA1199 Missense_Mutation p.F518L 0.24 deleterious(0.04) possibly_damaging(0.556) TCGA-EI-6917-01 15 81427619 81427619 G T C15orf26 Missense_Mutation p.M26I 0.29 tolerated(0.09) benign(0.384) TCGA-EI-6917-01 15 81436036 81436036 A G C15orf26 Missense_Mutation p.K171E 0.15 deleterious(0.03) benign(0.228) TCGA-EI-6917-01 15 83710635 83710635 C T BTBD1 Missense_Mutation p.R236Q 0.22 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 15 84706626 84706626 C T ADAMTSL3 3'UTR 0.39 TCGA-EI-6917-01 15 85164531 85164531 G A ZSCAN2 Missense_Mutation p.E369K 0.15 tolerated(1) probably_damaging(0.997) TCGA-EI-6917-01 15 85432053 85432053 C A SLC28A1 Missense_Mutation p.S49R 0.28 tolerated(0.51) benign(0.03) TCGA-EI-6917-01 15 85486738 85486738 G A SLC28A1 Silent p.G548G 0.29 TCGA-EI-6917-01 15 86128944 86128944 G A AKAP13 Missense_Mutation p.V1351M 0.19 tolerated(0.46) benign(0.012) TCGA-EI-6917-01 15 86807597 86807597 G T AGBL1 Missense_Mutation p.D353Y 0.24 deleterious(0) possibly_damaging(0.73) TCGA-EI-6917-01 15 86807791 86807791 G A AGBL1 Silent p.P417P 0.32 TCGA-EI-6917-01 15 86807961 86807961 G T AGBL1 Missense_Mutation p.R474I 0.24 tolerated(0.18) possibly_damaging(0.467) TCGA-EI-6917-01 15 87572073 87572073 G T AGBL1 3'UTR 0.13 TCGA-EI-6917-01 15 89390629 89390629 C T ACAN Silent p.L529L 0.26 TCGA-EI-6917-01 15 89402413 89402413 C T ACAN Silent p.S2199S 0.24 TCGA-EI-6917-01 15 89403593 89403593 C T ACAN Missense_Mutation p.A2290V 0.33 tolerated(0.17) possibly_damaging(0.681) TCGA-EI-6917-01 15 89449889 89449889 C T MFGE8 Missense_Mutation p.D170N 0.30 tolerated(0.34) benign(0.002) TCGA-EI-6917-01 15 89744916 89744916 G A ABHD2 3'UTR 0.22 TCGA-EI-6917-01 15 89811736 89811736 G T FANCI Nonsense_Mutation p.E288* 0.18 TCGA-EI-6917-01 15 89860182 89860182 G A FANCI 3'UTR 0.14 TCGA-EI-6917-01 15 89871930 89871930 G A POLG Missense_Mutation p.R386C 0.20 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 15 90016044 90016044 C A RHCG Missense_Mutation p.K454N 0.22 deleterious(0.03) benign(0.02) TCGA-EI-6917-01 15 90210353 90210353 C A PLIN1 Missense_Mutation p.K341N 0.26 tolerated(0.37) benign(0.017) TCGA-EI-6917-01 15 90272980 90272980 G A WDR93 Missense_Mutation p.R397Q 0.30 deleterious(0.02) possibly_damaging(0.768) TCGA-EI-6917-01 15 90610702 90610702 C T ZNF710 Silent p.F111F 0.13 TCGA-EI-6917-01 15 90801398 90801398 G A TTLL13 Missense_Mutation p.R355Q 0.22 tolerated(0.24) benign(0.021) TCGA-EI-6917-01 15 90814775 90814775 A C NGRN Missense_Mutation p.N211H 0.31 tolerated(0.06) probably_damaging(0.975) TCGA-EI-6917-01 15 91448875 91448875 G A MAN2A2 Missense_Mutation p.D153N 0.22 deleterious(0.03) possibly_damaging(0.626) TCGA-EI-6917-01 15 91524880 91524880 A C PRC1 Missense_Mutation p.F174C 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 15 91525082 91525082 C T PRC1 Missense_Mutation p.E133K 0.23 deleterious(0.01) benign(0.117) TCGA-EI-6917-01 15 93015619 93015619 T G C15orf32 Missense_Mutation p.L81V 0.23 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-EI-6917-01 15 94942238 94942238 G T MCTP2 Nonsense_Mutation p.E613* 0.09 TCGA-EI-6917-01 15 95019952 95019952 G A MCTP2 Missense_Mutation p.R833Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 15 99671092 99671092 G A SYNM Missense_Mutation p.D842N 0.21 deleterious(0) probably_damaging(0.932) TCGA-EI-6917-01 16 10274007 10274007 C T GRIN2A Missense_Mutation p.D88N 0.40 tolerated(0.07) probably_damaging(0.951) TCGA-EI-6917-01 16 10274037 10274037 C T GRIN2A Missense_Mutation p.D78N 0.17 tolerated(0.66) probably_damaging(0.999) TCGA-EI-6917-01 16 1033752 1033752 G A SOX8 Silent p.R149R 0.35 TCGA-EI-6917-01 16 10626882 10626882 C T EMP2 Silent p.A128A 0.14 TCGA-EI-6917-01 16 10637458 10637458 C T EMP2 Silent p.T46T 0.28 TCGA-EI-6917-01 16 10855248 10855248 G T NUBP1 Nonsense_Mutation p.E212* 0.20 TCGA-EI-6917-01 16 11035604 11035604 G A DEXI Missense_Mutation p.L87F 0.28 tolerated_low_confidence(0.13) probably_damaging(0.934) TCGA-EI-6917-01 16 1129399 1129399 C T SSTR5 Silent p.F177F 0.36 TCGA-EI-6917-01 16 1129406 1129406 G A SSTR5 Missense_Mutation p.V180M 0.31 deleterious(0) probably_damaging(0.913) TCGA-EI-6917-01 16 11362731 11362731 G A TNP2 Missense_Mutation p.T130M 0.23 deleterious(0) benign(0.161) TCGA-EI-6917-01 16 11370064 11370064 C T PRM2 Missense_Mutation p.R55H 0.23 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 16 11770034 11770034 G A SNN Missense_Mutation p.R40H 0.28 deleterious_low_confidence(0) benign(0) TCGA-EI-6917-01 16 11862325 11862325 C A ZC3H7A Missense_Mutation p.E402D 0.35 tolerated(0.5) benign(0.001) TCGA-EI-6917-01 16 12136879 12136879 G A SNX29 Missense_Mutation p.E125K 0.18 deleterious(0) benign(0.422) TCGA-EI-6917-01 16 1255242 1255242 C T CACNA1H Silent p.F860F 0.36 TCGA-EI-6917-01 16 13010672 13010672 C T SHISA9 Missense_Mutation p.H231Y 0.24 tolerated(0.16) benign(0.083) TCGA-EI-6917-01 16 14721035 14721035 C T PARN Silent p.T85T 0.23 TCGA-EI-6917-01 16 14989834 14989834 C T NOMO1 3'UTR 0.20 TCGA-EI-6917-01 16 15100331 15100331 G A PDXDC1 Missense_Mutation p.R157Q 0.14 tolerated(0.13) benign(0.041) TCGA-EI-6917-01 16 15130028 15130028 G A PDXDC1 Missense_Mutation p.A755T 0.29 tolerated_low_confidence(0.12) benign(0.002) TCGA-EI-6917-01 16 15130049 15130049 G A PDXDC1 Missense_Mutation p.D762N 0.25 tolerated_low_confidence(0.24) benign(0.014) TCGA-EI-6917-01 16 1559907 1559907 G A TELO2 Silent p.K828K 0.53 TCGA-EI-6917-01 16 15706616 15706616 G A KIAA0430 Missense_Mutation p.S1091L 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-EI-6917-01 16 15850222 15850222 G A MYH11 Silent p.F582F 0.31 TCGA-EI-6917-01 16 15850300 15850300 G A MYH11 Silent p.F556F 0.22 TCGA-EI-6917-01 16 16357003 16357003 G A NOMO3 Missense_Mutation p.D490N 0.41 tolerated(0.37) benign(0.005) TCGA-EI-6917-01 16 1652554 1652554 G A IFT140 Silent p.F62F 0.30 TCGA-EI-6917-01 16 17211650 17211650 C T XYLT1 Missense_Mutation p.E804K 0.26 deleterious(0.01) probably_damaging(0.955) TCGA-EI-6917-01 16 17353254 17353254 G A XYLT1 Silent p.F168F 0.27 TCGA-EI-6917-01 16 18584289 18584289 T C RP11-457I16.2 5'Flank 0.18 TCGA-EI-6917-01 16 18591544 18591544 G A ABCC6P1 RNA 0.29 TCGA-EI-6917-01 16 18602459 18602459 C T ABCC6P1 RNA 0.19 TCGA-EI-6917-01 16 18804586 18804586 C A ARL6IP1 Missense_Mutation p.K200N 0.22 deleterious(0.02) unknown(0) TCGA-EI-6917-01 16 18840826 18840826 C T SMG1 Missense_Mutation p.E3129K 0.35 deleterious(0.01) possibly_damaging(0.566) TCGA-EI-6917-01 16 19129200 19129200 C A ITPRIPL2 3'UTR 0.15 TCGA-EI-6917-01 16 19557761 19557761 G T CCP110 Missense_Mutation p.K935N 0.18 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 16 20335551 20335551 G A GP2 Missense_Mutation p.S41L 0.20 deleterious(0) possibly_damaging(0.505) TCGA-EI-6917-01 16 20638627 20638627 C T ACSM1 Silent p.E437E 0.24 TCGA-EI-6917-01 16 20696631 20696631 C T ACSM1 Missense_Mutation p.R96H 0.27 deleterious(0) probably_damaging(0.97) TCGA-EI-6917-01 16 20826358 20826358 C T AC004381.6 Nonsense_Mutation p.R121* 0.25 TCGA-EI-6917-01 16 20976329 20976329 G T DNAH3 Silent p.I2959I 0.25 TCGA-EI-6917-01 16 20981178 20981178 G T DNAH3 Silent p.V2798V 0.36 TCGA-EI-6917-01 16 20981270 20981270 C T DNAH3 Missense_Mutation p.E2768K 0.20 deleterious(0.04) benign(0.329) TCGA-EI-6917-01 16 21011751 21011751 G A DNAH3 Silent p.F2072F 0.29 TCGA-EI-6917-01 16 21065823 21065823 C T DNAH3 Silent p.A1319A 0.21 TCGA-EI-6917-01 16 21073985 21073985 C T DNAH3 Missense_Mutation p.D1180N 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 16 21092985 21092985 C T DNAH3 Missense_Mutation p.E981K 0.29 tolerated(0.53) benign(0.269) TCGA-EI-6917-01 16 21629387 21629387 G T METTL9 Missense_Mutation p.K186N 0.23 deleterious(0.01) probably_damaging(0.94) TCGA-EI-6917-01 16 21666906 21666906 C A METTL9 3'UTR 0.23 TCGA-EI-6917-01 16 21771872 21771872 C T OTOA 3'UTR 0.19 TCGA-EI-6917-01 16 21995782 21995782 C A PDZD9 Missense_Mutation p.D141Y 0.27 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 16 22132387 22132387 G T VWA3A Missense_Mutation p.K405N 0.26 deleterious(0) possibly_damaging(0.459) TCGA-EI-6917-01 16 22327929 22327929 G A POLR3E Missense_Mutation p.R217H 0.43 tolerated(0.1) possibly_damaging(0.455) TCGA-EI-6917-01 16 2235318 2235318 C T CASKIN1 Silent p.K380K 0.29 TCGA-EI-6917-01 16 23080168 23080168 C T USP31 Silent p.R1086R 0.20 TCGA-EI-6917-01 16 23080647 23080647 C T USP31 Missense_Mutation p.D927N 0.20 tolerated_low_confidence(0.09) benign(0.008) TCGA-EI-6917-01 16 23540896 23540896 G A EARS2 Missense_Mutation p.R427C 0.24 deleterious(0.03) benign(0.189) TCGA-EI-6917-01 16 23641147 23641147 G A PALB2 Silent p.F776F 0.30 TCGA-EI-6917-01 16 23672577 23672577 T C DCTN5 Missense_Mutation p.V108A 0.29 deleterious(0) probably_damaging(0.955) TCGA-EI-6917-01 16 23676950 23676950 C T DCTN5 Missense_Mutation p.R118C 0.14 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 16 23847659 23847659 G A PRKCB Missense_Mutation p.D55N 0.27 deleterious(0) possibly_damaging(0.618) TCGA-EI-6917-01 16 24105553 24105553 G T PRKCB Missense_Mutation p.R252S 0.30 tolerated(0.11) benign(0.06) TCGA-EI-6917-01 16 24226007 24226007 G A PRKCB Missense_Mutation p.R631Q 0.15 tolerated(0.35) benign(0.011) TCGA-EI-6917-01 16 24231548 24231548 A C PRKCB 3'UTR 0.24 TCGA-EI-6917-01 16 24358126 24358126 G A CACNG3 Missense_Mutation p.E95K 0.26 deleterious(0.01) possibly_damaging(0.698) TCGA-EI-6917-01 16 24358132 24358132 C A CACNG3 Missense_Mutation p.L97I 0.24 tolerated(0.19) possibly_damaging(0.731) TCGA-EI-6917-01 16 24582783 24582783 G T RBBP6 Missense_Mutation p.D1466Y 0.31 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 16 24583006 24583006 G A RBBP6 Missense_Mutation p.R1540K 0.20 tolerated_low_confidence(0.68) unknown(0) TCGA-EI-6917-01 16 24788511 24788511 C T TNRC6A Missense_Mutation p.R141C 0.27 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 16 25258304 25258304 G A ZKSCAN2 Nonsense_Mutation p.R405* 0.27 TCGA-EI-6917-01 16 25258661 25258661 C A ZKSCAN2 Nonsense_Mutation p.E286* 0.31 TCGA-EI-6917-01 16 27474897 27474897 G A GTF3C1 Silent p.F1963F 0.20 TCGA-EI-6917-01 16 27517316 27517316 G A GTF3C1 Silent p.S558S 0.12 TCGA-EI-6917-01 16 27523104 27523104 G A GTF3C1 Silent p.F364F 0.28 TCGA-EI-6917-01 16 27642398 27642398 G T KIAA0556 Missense_Mutation p.R108I 0.32 deleterious(0.02) possibly_damaging(0.726) TCGA-EI-6917-01 16 277436 277436 T G LUC7L Intron 0.19 TCGA-EI-6917-01 16 28913539 28913539 G T ATP2A1 Missense_Mutation p.A786S 0.36 deleterious(0.01) possibly_damaging(0.72) TCGA-EI-6917-01 16 29675460 29675460 G A SPN Silent p.T137T 0.26 TCGA-EI-6917-01 16 29676407 29676407 C T SPN 3'UTR 0.28 TCGA-EI-6917-01 16 29680830 29680830 C A SPN 3'UTR 0.22 TCGA-EI-6917-01 16 30017794 30017794 T C DOC2A Missense_Mutation p.T333A 0.38 deleterious(0.03) benign(0.044) TCGA-EI-6917-01 16 30196692 30196692 C T CORO1A Silent p.S54S 0.27 TCGA-EI-6917-01 16 30371145 30371145 C T TBC1D10B Missense_Mutation p.R430Q 0.23 tolerated(0.1) possibly_damaging(0.532) TCGA-EI-6917-01 16 30505572 30505572 C T ITGAL Missense_Mutation p.S418L 0.17 tolerated(0.21) benign(0.002) TCGA-EI-6917-01 16 30510535 30510535 C A ITGAL Missense_Mutation p.S658Y 0.23 tolerated(0.06) possibly_damaging(0.796) TCGA-EI-6917-01 16 3065903 3065903 G A CLDN6 Silent p.I40I 0.25 TCGA-EI-6917-01 16 30774490 30774490 C T RNF40 Missense_Mutation p.R62W 0.27 deleterious(0) possibly_damaging(0.816) TCGA-EI-6917-01 16 31094498 31094498 C T ZNF646 3'UTR 0.22 TCGA-EI-6917-01 16 31230425 31230425 C T TRIM72 Missense_Mutation p.P134S 0.23 tolerated(0.36) benign(0.293) TCGA-EI-6917-01 16 31371103 31371103 G T ITGAX Missense_Mutation p.M171I 0.34 tolerated(0.13) benign(0) TCGA-EI-6917-01 16 31427873 31427873 T C ITGAD Missense_Mutation p.V802A 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-EI-6917-01 16 31435471 31435471 G A ITGAD Missense_Mutation p.D1070N 0.26 tolerated(1) benign(0.019) TCGA-EI-6917-01 16 31927273 31927273 G A ZNF267 Missense_Mutation p.R568Q 0.17 tolerated(0.12) probably_damaging(0.97) TCGA-EI-6917-01 16 32265030 32265030 T C TP53TG3D Missense_Mutation p.L119S 0.10 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-EI-6917-01 16 3293439 3293439 G A MEFV Missense_Mutation p.S683L 0.20 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 16 333301 333301 C A PDIA2 Silent p.I44I 0.23 TCGA-EI-6917-01 16 3486449 3486449 C T ZNF597 Missense_Mutation p.R417Q 0.20 tolerated(0.38) benign(0.126) TCGA-EI-6917-01 16 3614506 3614506 G A NLRC3 Silent p.I191I 0.50 TCGA-EI-6917-01 16 3799632 3799632 C T CREBBP Missense_Mutation p.E1278K 0.23 unknown(0) TCGA-EI-6917-01 16 3828135 3828135 C A CREBBP Nonsense_Mutation p.E664* 0.24 TCGA-EI-6917-01 16 396689 396689 C T AXIN1 Missense_Mutation p.D113N 0.46 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 16 4015811 4015811 C T ADCY9 Missense_Mutation p.E1343K 0.16 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EI-6917-01 16 4433294 4433294 C T VASN 3'UTR 0.26 TCGA-EI-6917-01 16 4562492 4562492 C T CDIP1 3'UTR 0.33 TCGA-EI-6917-01 16 4626459 4626459 G A C16orf96 Missense_Mutation p.D660N 0.23 tolerated(0.4) possibly_damaging(0.741) TCGA-EI-6917-01 16 46712988 46712988 C T VPS35 Missense_Mutation p.R196Q 0.25 deleterious(0) probably_damaging(0.97) TCGA-EI-6917-01 16 46715326 46715326 C T VPS35 Missense_Mutation p.E96K 0.24 deleterious(0) probably_damaging(0.985) TCGA-EI-6917-01 16 46956231 46956231 C T GPT2 Missense_Mutation p.S372L 0.50 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 16 47162375 47162375 G T NETO2 Missense_Mutation p.F114L 0.14 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 16 47462766 47462766 G A ITFG1 Nonsense_Mutation p.R202* 0.33 TCGA-EI-6917-01 16 47531334 47531334 G T PHKB Missense_Mutation p.S34I 0.40 tolerated(0.11) benign(0.06) TCGA-EI-6917-01 16 47531394 47531394 G T PHKB Missense_Mutation p.R54I 0.27 tolerated(0.22) benign(0.063) TCGA-EI-6917-01 16 47684469 47684469 C A PHKB Missense_Mutation p.F604L 0.21 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 16 4802835 4802835 C T ZNF500 Missense_Mutation p.E329K 0.24 deleterious(0.01) benign(0.023) TCGA-EI-6917-01 16 48256542 48256542 T A ABCC11 Missense_Mutation p.Q248H 0.28 tolerated(0.06) possibly_damaging(0.796) TCGA-EI-6917-01 16 48256587 48256587 C T ABCC11 Silent p.R233R 0.26 TCGA-EI-6917-01 16 48330057 48330057 G A LONP2 Missense_Mutation p.M505I 0.21 deleterious(0.02) possibly_damaging(0.527) TCGA-EI-6917-01 16 48594663 48594663 A G N4BP1 Splice_Site p.X630_splice 0.25 TCGA-EI-6917-01 16 49433133 49433133 G A C16orf78 Missense_Mutation p.E248K 0.22 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 16 50251492 50251492 C A PAPD5 Missense_Mutation p.S304Y 0.26 tolerated(0.17) possibly_damaging(0.706) TCGA-EI-6917-01 16 5046429 5046429 C T SEC14L5 Missense_Mutation p.R250W 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 16 50733484 50733484 C T NOD2 Silent p.F53F 0.19 TCGA-EI-6917-01 16 50821705 50821705 G A CYLD Missense_Mutation p.E684K 0.30 deleterious(0) possibly_damaging(0.872) TCGA-EI-6917-01 16 5094505 5094505 C T C16orf89 3'UTR 0.31 TCGA-EI-6917-01 16 51175886 51175886 C T SALL1 Missense_Mutation p.E83K 0.31 tolerated(0.19) benign(0.003) TCGA-EI-6917-01 16 53272403 53272403 C T CHD9 Missense_Mutation p.R928C 0.33 benign(0.038) TCGA-EI-6917-01 16 53358407 53358407 G A CHD9 Missense_Mutation p.G2749D 0.21 unknown(0) TCGA-EI-6917-01 16 53476577 53476577 G A RBL2 Missense_Mutation p.E127K 0.24 deleterious(0.01) possibly_damaging(0.701) TCGA-EI-6917-01 16 53653105 53653105 G A RPGRIP1L Missense_Mutation p.R1150W 0.25 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 16 55364268 55364268 G A IRX6 3'UTR 0.11 TCGA-EI-6917-01 16 56423101 56423101 G A AMFR Silent p.F424F 0.22 TCGA-EI-6917-01 16 56970692 56970692 C T HERPUD1 Missense_Mutation p.R132W 0.22 tolerated(0.17) benign(0.339) TCGA-EI-6917-01 16 57684191 57684191 C T GPR56 5'UTR 0.27 TCGA-EI-6917-01 16 57741461 57741461 G A CCDC135 Silent p.E316E 0.25 TCGA-EI-6917-01 16 58030751 58030751 G A ZNF319 Silent p.F473F 0.26 TCGA-EI-6917-01 16 58202511 58202511 T C CSNK2A2 Intron 0.24 TCGA-EI-6917-01 16 58220739 58220739 T G CSNK2A2 Missense_Mutation p.K80Q 0.29 deleterious(0.05) benign(0.34) TCGA-EI-6917-01 16 58314619 58314619 C T PRSS54 Missense_Mutation p.D233N 0.27 tolerated(0.76) benign(0.061) TCGA-EI-6917-01 16 58318584 58318584 G A PRSS54 Silent p.F188F 0.25 TCGA-EI-6917-01 16 58319949 58319949 C T PRSS54 Silent p.A138A 0.26 TCGA-EI-6917-01 16 58554859 58554859 C T CNOT1 3'UTR 0.50 TCGA-EI-6917-01 16 58566220 58566220 C T CNOT1 Missense_Mutation p.R1992Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 16 58570928 58570928 C T CNOT1 Missense_Mutation p.D1871N 0.34 deleterious(0.01) benign(0.012) TCGA-EI-6917-01 16 61687930 61687930 C T CDH8 Missense_Mutation p.R661Q 0.18 deleterious(0.02) probably_damaging(0.992) TCGA-EI-6917-01 16 61689449 61689449 C T CDH8 Missense_Mutation p.E611K 0.25 deleterious(0.03) probably_damaging(0.972) TCGA-EI-6917-01 16 65005484 65005484 C T CDH11 Missense_Mutation p.R547Q 0.27 tolerated(0.98) benign(0.326) TCGA-EI-6917-01 16 65038740 65038740 C T CDH11 Silent p.L11L 0.34 TCGA-EI-6917-01 16 66642231 66642231 T G CMTM3 Missense_Mutation p.F56C 0.29 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 16 66852454 66852454 C A NAE1 Missense_Mutation p.D200Y 0.27 deleterious(0) possibly_damaging(0.8) TCGA-EI-6917-01 16 66920835 66920835 G A PDP2 3'UTR 0.24 TCGA-EI-6917-01 16 66956020 66956020 G A RRAD Missense_Mutation p.R296C 0.16 deleterious(0) possibly_damaging(0.836) TCGA-EI-6917-01 16 66974489 66974489 C T CES2 Missense_Mutation p.S300L 0.23 tolerated(0.13) benign(0.111) TCGA-EI-6917-01 16 67242274 67242274 C A LRRC29 Missense_Mutation p.A76S 0.27 tolerated(0.29) benign(0.065) TCGA-EI-6917-01 16 67477025 67477025 T G ATP6V0D1 Missense_Mutation p.I180L 0.21 tolerated(0.06) benign(0.246) TCGA-EI-6917-01 16 67654625 67654625 G A CTCF Missense_Mutation p.R371H 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 16 67917456 67917456 T G EDC4 Intron 0.20 TCGA-EI-6917-01 16 67981242 67981242 C A SLC12A4 Missense_Mutation p.K690N 0.38 deleterious(0) possibly_damaging(0.837) TCGA-EI-6917-01 16 68014097 68014097 C T DPEP3 Missense_Mutation p.A88T 0.32 tolerated(0.28) benign(0.003) TCGA-EI-6917-01 16 68330347 68330347 C T SLC7A6 Silent p.F400F 0.30 TCGA-EI-6917-01 16 68597706 68597706 G A ZFP90 Missense_Mutation p.R339Q 0.23 tolerated(0.09) benign(0.041) TCGA-EI-6917-01 16 69173730 69173730 C T CIRH1A Missense_Mutation p.R147C 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 16 69404499 69404499 C T TERF2 Missense_Mutation p.E201K 0.31 deleterious(0) benign(0.054) TCGA-EI-6917-01 16 69744750 69744750 C T NQO1 3'UTR 0.45 TCGA-EI-6917-01 16 70908730 70908730 T C HYDIN Silent p.P3550P 0.19 TCGA-EI-6917-01 16 70955004 70955004 G A HYDIN Silent p.G2425G 0.22 TCGA-EI-6917-01 16 71103348 71103348 T C HYDIN Missense_Mutation p.Y599C 0.28 benign(0.08) TCGA-EI-6917-01 16 711898 711898 G A WDR90 Missense_Mutation p.R1291Q 0.34 tolerated(0.2) benign(0.007) TCGA-EI-6917-01 16 71196476 71196476 T G HYDIN Missense_Mutation p.N225T 0.14 probably_damaging(0.984) TCGA-EI-6917-01 16 71209610 71209610 G A HYDIN Missense_Mutation p.S139L 0.26 probably_damaging(0.921) TCGA-EI-6917-01 16 71509257 71509257 C A ZNF19 Missense_Mutation p.R398I 0.32 deleterious(0.04) benign(0.005) TCGA-EI-6917-01 16 71690480 71690480 C A PHLPP2 Missense_Mutation p.R795I 0.32 deleterious(0) probably_damaging(0.927) TCGA-EI-6917-01 16 72166677 72166677 C T PMFBP1 Missense_Mutation p.E473K 0.31 tolerated(0.15) possibly_damaging(0.646) TCGA-EI-6917-01 16 72822728 72822728 C T ZFHX3 Silent p.P3149P 0.33 TCGA-EI-6917-01 16 74339301 74339301 C T PSMD7 Silent p.V215V 0.25 TCGA-EI-6917-01 16 74372735 74372735 C T RP11-252A24.2 RNA 0.26 TCGA-EI-6917-01 16 74376142 74376142 C T RP11-252A24.2 RNA 0.25 TCGA-EI-6917-01 16 74455055 74455055 C T CLEC18B Silent p.P38P 0.25 TCGA-EI-6917-01 16 74660431 74660431 C T RFWD3 Missense_Mutation p.R664Q 0.30 deleterious(0.02) possibly_damaging(0.791) TCGA-EI-6917-01 16 75238748 75238748 C T CTRB2 Missense_Mutation p.E185K 0.40 tolerated(0.19) benign(0.013) TCGA-EI-6917-01 16 75602044 75602044 G T GABARAPL2 Missense_Mutation p.R67M 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 16 75661696 75661696 T C KARS 3'UTR 0.32 TCGA-EI-6917-01 16 75690499 75690499 G A TERF2IP Missense_Mutation p.R397Q 0.27 tolerated(0.12) possibly_damaging(0.741) TCGA-EI-6917-01 16 76482697 76482697 T C CNTNAP4 Missense_Mutation p.V234A 0.17 tolerated(0.74) benign(0.005) TCGA-EI-6917-01 16 76523690 76523690 G T CNTNAP4 Nonsense_Mutation p.E591* 0.12 TCGA-EI-6917-01 16 77353903 77353903 C T ADAMTS18 Missense_Mutation p.R792Q 0.18 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 16 7743326 7743326 C T RBFOX1 Intron 0.10 TCGA-EI-6917-01 16 77775869 77775869 G T NUDT7 3'UTR 0.27 TCGA-EI-6917-01 16 787415 787415 G A NARFL Intron 0.28 TCGA-EI-6917-01 16 81087582 81087582 G A RP11-303E16.5 5'Flank 0.35 TCGA-EI-6917-01 16 81157352 81157352 C T PKD1L2 RNA 0.27 TCGA-EI-6917-01 16 81164190 81164190 C T PKD1L2 RNA 0.22 TCGA-EI-6917-01 16 81183442 81183442 A G PKD1L2 RNA 0.18 TCGA-EI-6917-01 16 81204281 81204281 C A PKD1L2 3'Flank 0.24 TCGA-EI-6917-01 16 81249972 81249972 C T PKD1L2 Missense_Mutation p.S114N 0.25 deleterious(0.02) benign(0.117) TCGA-EI-6917-01 16 81922834 81922834 G T PLCG2 Missense_Mutation p.D275Y 0.21 deleterious(0.02) benign(0.29) TCGA-EI-6917-01 16 81972440 81972440 G A PLCG2 Missense_Mutation p.R1078Q 0.32 deleterious(0) probably_damaging(0.985) TCGA-EI-6917-01 16 82131703 82131703 T C HSD17B2 Missense_Mutation p.W276R 0.21 deleterious(0.01) benign(0.287) TCGA-EI-6917-01 16 830489 830489 C T MSLNL Missense_Mutation p.R171H 0.23 benign(0.001) TCGA-EI-6917-01 16 84125397 84125397 G A MBTPS1 Silent p.I301I 0.15 TCGA-EI-6917-01 16 84230522 84230522 A G ADAD2 Missense_Mutation p.D647G 0.30 tolerated(0.2) benign(0.127) TCGA-EI-6917-01 16 84256270 84256270 G A KCNG4 Silent p.F371F 0.20 TCGA-EI-6917-01 16 84520283 84520283 G A TLDC1 Silent p.F304F 0.22 TCGA-EI-6917-01 16 84911049 84911049 G A CRISPLD2 Missense_Mutation p.D388N 0.26 tolerated(0.35) benign(0.005) TCGA-EI-6917-01 16 85012810 85012810 A C ZDHHC7 Missense_Mutation p.F211L 0.22 deleterious(0.01) benign(0.045) TCGA-EI-6917-01 16 855561 855561 G A PRR25 Missense_Mutation p.R40Q 0.30 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-EI-6917-01 16 86612688 86612688 G A FOXL1 Missense_Mutation p.G120D 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 16 86613522 86613522 G A FOXL1 3'UTR 0.31 TCGA-EI-6917-01 16 86614685 86614685 G A FOXL1 3'UTR 0.38 TCGA-EI-6917-01 16 86615226 86615226 G A FOXL1 3'UTR 0.22 TCGA-EI-6917-01 16 8732952 8732952 C T METTL22 Silent p.V235V 0.28 TCGA-EI-6917-01 16 87369046 87369046 C T FBXO31 Missense_Mutation p.R287H 0.21 tolerated(0.05) probably_damaging(0.991) TCGA-EI-6917-01 16 88039793 88039793 G A BANP Missense_Mutation p.D185N 0.32 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EI-6917-01 16 8844299 8844299 T G ABAT Missense_Mutation p.F73L 0.18 tolerated(0.36) benign(0.021) TCGA-EI-6917-01 16 88495267 88495267 C A ZNF469 Missense_Mutation p.F463L 0.33 possibly_damaging(0.739) TCGA-EI-6917-01 16 88495567 88495567 C T ZNF469 Silent p.F563F 0.38 TCGA-EI-6917-01 16 88499319 88499319 C T ZNF469 Missense_Mutation p.A1786V 0.11 benign(0.264) TCGA-EI-6917-01 16 88503736 88503736 G A ZNF469 Silent p.A3258A 0.44 TCGA-EI-6917-01 16 8862722 8862722 C T ABAT Silent p.I236I 0.25 TCGA-EI-6917-01 16 88945800 88945800 G A CBFA2T3 Missense_Mutation p.R514C 0.43 deleterious(0.03) probably_damaging(0.943) TCGA-EI-6917-01 16 89256813 89256813 C T CDH15 Missense_Mutation p.R381W 0.16 tolerated(0.19) probably_damaging(0.953) TCGA-EI-6917-01 16 89294431 89294431 C T ZNF778 Missense_Mutation p.H551Y 0.16 deleterious(0.04) benign(0.442) TCGA-EI-6917-01 16 89351981 89351981 G A ANKRD11 Silent p.F323F 0.33 TCGA-EI-6917-01 16 89645283 89645283 C T CPNE7 Silent p.L126L 0.30 TCGA-EI-6917-01 16 89651901 89651901 G T CPNE7 Missense_Mutation p.W282C 0.22 deleterious(0.01) possibly_damaging(0.464) TCGA-EI-6917-01 16 8987769 8987769 C T USP7 3'UTR 0.23 TCGA-EI-6917-01 16 8994405 8994405 T C USP7 Missense_Mutation p.D764G 0.17 tolerated(0.17) benign(0.25) TCGA-EI-6917-01 16 89985861 89985861 G T MC1R Missense_Mutation p.K65N 0.28 deleterious(0.02) probably_damaging(0.915) TCGA-EI-6917-01 16 90001998 90001998 G A TUBB3 Missense_Mutation p.R380H 0.22 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-EI-6917-01 16 90027425 90027425 G A DEF8 Missense_Mutation p.E262K 0.20 tolerated(0.37) benign(0.217) TCGA-EI-6917-01 16 90027490 90027490 G A DEF8 Silent p.A283A 0.17 TCGA-EI-6917-01 16 90038607 90038607 C T CENPBD1 5'UTR 0.36 TCGA-EI-6917-01 16 90161851 90161851 C T TUBB8P7 RNA 0.16 TCGA-EI-6917-01 16 9858540 9858540 C T GRIN2A Missense_Mutation p.S954N 0.20 tolerated(1) benign(0.001) TCGA-EI-6917-01 16 9862891 9862891 C A GRIN2A Missense_Mutation p.K804N 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 16 9943624 9943624 G A GRIN2A Silent p.F439F 0.39 TCGA-EI-6917-01 17 10248558 10248558 G A MYH13 Silent p.F515F 0.35 TCGA-EI-6917-01 17 10258004 10258004 G A MYH13 Missense_Mutation p.A333V 0.48 deleterious(0.01) benign(0.006) TCGA-EI-6917-01 17 10301909 10301909 C T MYH8 Missense_Mutation p.D1344N 0.31 deleterious(0) probably_damaging(0.956) TCGA-EI-6917-01 17 10404701 10404701 T C MYH1 Missense_Mutation p.E1155G 0.24 deleterious(0.01) probably_damaging(0.955) TCGA-EI-6917-01 17 10406454 10406454 C A MYH1 Nonsense_Mutation p.E935* 0.28 TCGA-EI-6917-01 17 10417185 10417185 C T MYH1 Missense_Mutation p.A232T 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 10427142 10427142 T C MYH2 Silent p.G1745G 0.27 TCGA-EI-6917-01 17 10536090 10536090 C T MYH3 Silent p.E1553E 0.20 TCGA-EI-6917-01 17 10549127 10549127 C A MYH3 Missense_Mutation p.E346D 0.26 deleterious(0) probably_damaging(0.96) TCGA-EI-6917-01 17 10554892 10554892 G A MYH3 Missense_Mutation p.R148C 0.24 deleterious(0) probably_damaging(0.946) TCGA-EI-6917-01 17 10584430 10584430 C T SCO1 3'UTR 0.24 TCGA-EI-6917-01 17 10626634 10626634 A G TMEM220 Silent p.G100G 0.17 TCGA-EI-6917-01 17 11547985 11547985 A C DNAH9 Missense_Mutation p.K647Q 0.20 benign(0.082) TCGA-EI-6917-01 17 11572855 11572855 C T DNAH9 Missense_Mutation p.H1033Y 0.23 benign(0.009) TCGA-EI-6917-01 17 11572959 11572959 G A DNAH9 Silent p.T1067T 0.24 TCGA-EI-6917-01 17 11583088 11583088 A G DNAH9 Missense_Mutation p.D1123G 0.20 benign(0.028) TCGA-EI-6917-01 17 11603148 11603148 G T DNAH9 Missense_Mutation p.S1658I 0.33 probably_damaging(0.992) TCGA-EI-6917-01 17 11786927 11786927 G T DNAH9 Nonsense_Mutation p.G3611* 0.26 TCGA-EI-6917-01 17 11790241 11790241 G A DNAH9 Missense_Mutation p.D3691N 0.22 benign(0.028) TCGA-EI-6917-01 17 11806059 11806059 C A DNAH9 Missense_Mutation p.F3810L 0.29 possibly_damaging(0.903) TCGA-EI-6917-01 17 11808979 11808979 G A DNAH9 Missense_Mutation p.D3868N 0.28 benign(0.006) TCGA-EI-6917-01 17 11998898 11998898 C T MAP2K4 Missense_Mutation p.R134W 0.46 deleterious(0) benign(0.115) TCGA-EI-6917-01 17 12639628 12639628 C T MYOCD Missense_Mutation p.S189L 0.42 tolerated(0.82) benign(0.002) TCGA-EI-6917-01 17 12655756 12655756 G A MYOCD Missense_Mutation p.R384Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 12893389 12893389 C T ARHGAP44 Silent p.L786L 0.22 TCGA-EI-6917-01 17 15234562 15234562 C T TEKT3 Missense_Mutation p.R114Q 0.22 deleterious(0.01) probably_damaging(0.993) TCGA-EI-6917-01 17 15519037 15519037 C T RP11-385D13.1 Missense_Mutation p.A508T 0.07 tolerated_low_confidence(0.11) benign(0.002) TCGA-EI-6917-01 17 15620175 15620175 G T ZNF286A Missense_Mutation p.E379D 0.22 deleterious(0.03) probably_damaging(0.986) TCGA-EI-6917-01 17 1577960 1577960 C T PRPF8 Silent p.T1025T 0.22 TCGA-EI-6917-01 17 1629889 1629889 G A WDR81 Missense_Mutation p.D546N 0.16 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 16325914 16325914 G T TRPV2 Missense_Mutation p.E112D 0.37 tolerated(0.46) benign(0.001) TCGA-EI-6917-01 17 16638008 16638008 C A CCDC144A Missense_Mutation p.S808Y 0.27 tolerated(0.06) possibly_damaging(0.857) TCGA-EI-6917-01 17 16638743 16638743 G A CCDC144A Missense_Mutation p.R1053Q 0.27 tolerated(0.21) benign(0.005) TCGA-EI-6917-01 17 16722532 16722532 C T AC022596.6 RNA 0.17 TCGA-EI-6917-01 17 1684680 1684680 G A SMYD4 Missense_Mutation p.S772L 0.23 tolerated(0.18) benign(0.005) TCGA-EI-6917-01 17 17106180 17106180 C A PLD6 Missense_Mutation p.K220N 0.19 tolerated_low_confidence(0.06) benign(0.052) TCGA-EI-6917-01 17 17398737 17398737 C T RASD1 Missense_Mutation p.S183N 0.29 tolerated(1) benign(0.001) TCGA-EI-6917-01 17 17399303 17399303 A G RASD1 Missense_Mutation p.Y65H 0.23 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 17 17720300 17720300 C T SREBF1 Missense_Mutation p.R616H 0.31 deleterious(0.02) possibly_damaging(0.514) TCGA-EI-6917-01 17 17723584 17723584 C T SREBF1 Missense_Mutation p.A145T 0.30 tolerated(0.51) benign(0.005) TCGA-EI-6917-01 17 18052151 18052151 G A MYO15A Missense_Mutation p.D2281N 0.36 unknown(0) TCGA-EI-6917-01 17 18058467 18058467 C T MYO15A Silent p.S2756S 0.22 TCGA-EI-6917-01 17 18220054 18220054 G T SMCR8 Missense_Mutation p.K317N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 17 18565527 18565527 C A ZNF286B Missense_Mutation p.R431I 0.29 deleterious(0) possibly_damaging(0.824) TCGA-EI-6917-01 17 19290504 19290504 G A MFAP4 5'Flank 0.30 TCGA-EI-6917-01 17 19319609 19319609 C T RNF112 3'UTR 0.44 TCGA-EI-6917-01 17 1943812 1943812 G A DPH1 Missense_Mutation p.R312Q 0.31 tolerated(0.39) benign(0.145) TCGA-EI-6917-01 17 19459147 19459147 C A SLC47A1 Missense_Mutation p.L260I 0.21 tolerated(1) benign(0.016) TCGA-EI-6917-01 17 19552268 19552268 C A ALDH3A2 5'UTR 0.26 TCGA-EI-6917-01 17 19750062 19750062 G A ULK2 Missense_Mutation p.R153C 0.36 tolerated(0.28) benign(0.022) TCGA-EI-6917-01 17 19835222 19835222 G A AKAP10 Nonsense_Mutation p.R513* 0.23 TCGA-EI-6917-01 17 21322100 21322100 C T KCNJ12 3'UTR 0.23 TCGA-EI-6917-01 17 2196185 2196185 C T SMG6 Silent p.A746A 0.22 TCGA-EI-6917-01 17 2234323 2234323 C T TSR1 Missense_Mutation p.R526Q 0.33 deleterious(0) probably_damaging(0.978) TCGA-EI-6917-01 17 2601875 2601875 C T CLUH Missense_Mutation p.D388N 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 2607811 2607811 T G CLUH Missense_Mutation p.K12Q 0.29 tolerated_low_confidence(0.34) benign(0.056) TCGA-EI-6917-01 17 26084361 26084361 C T NOS2 Missense_Mutation p.E1125K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 26907072 26907072 C A RP11-192H23.4 Missense_Mutation p.D323Y 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-EI-6917-01 17 26950916 26950916 C T KIAA0100 Silent p.Q1607Q 0.27 TCGA-EI-6917-01 17 27051822 27051822 G A TLCD1 Silent p.F150F 0.31 TCGA-EI-6917-01 17 27237383 27237383 G A PHF12 Silent p.I740I 0.09 TCGA-EI-6917-01 17 27283748 27283748 C T SEZ6 Missense_Mutation p.R907H 0.18 tolerated(0.25) benign(0.035) TCGA-EI-6917-01 17 27861259 27861259 C T TAOK1 Nonsense_Mutation p.R829* 0.18 TCGA-EI-6917-01 17 27958500 27958500 G A SSH2 Nonsense_Mutation p.R1211* 0.26 TCGA-EI-6917-01 17 28120925 28120925 A G SSH2 Missense_Mutation p.S32P 0.36 tolerated(0.06) possibly_damaging(0.83) TCGA-EI-6917-01 17 28378167 28378167 C T EFCAB5 Missense_Mutation p.A411V 0.27 deleterious(0.02) benign(0.187) TCGA-EI-6917-01 17 28380661 28380661 G T EFCAB5 Silent p.L563L 0.31 TCGA-EI-6917-01 17 28407927 28407927 C A EFCAB5 Silent p.V1118V 0.26 TCGA-EI-6917-01 17 28961122 28961122 G T LRRC37BP1 RNA 0.26 TCGA-EI-6917-01 17 28964284 28964284 A C LRRC37BP1 RNA 0.25 TCGA-EI-6917-01 17 29062085 29062085 C T CTD-2349P21.5 3'Flank 0.24 TCGA-EI-6917-01 17 29096928 29096928 C T SUZ12P RNA 0.26 TCGA-EI-6917-01 17 29123276 29123276 C T CRLF3 Missense_Mutation p.D169N 0.16 tolerated(0.25) benign(0.009) TCGA-EI-6917-01 17 29162298 29162298 G T ATAD5 Missense_Mutation p.R400I 0.23 deleterious(0) probably_damaging(0.921) TCGA-EI-6917-01 17 29185255 29185255 A G ATAD5 Missense_Mutation p.E957G 0.16 tolerated(0.07) benign(0.003) TCGA-EI-6917-01 17 29221623 29221623 C T ATAD5 Missense_Mutation p.S1780L 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 29497004 29497004 G A NF1 Missense_Mutation p.R192Q 0.26 tolerated(0.34) benign(0.057) TCGA-EI-6917-01 17 29533316 29533316 G A NF1 Missense_Mutation p.R440Q 0.27 deleterious(0.01) probably_damaging(0.945) TCGA-EI-6917-01 17 29557326 29557326 G A NF1 Silent p.T1013T 0.20 TCGA-EI-6917-01 17 29758838 29758838 A C RAB11FIP4 Missense_Mutation p.K56T 0.34 deleterious(0.03) possibly_damaging(0.701) TCGA-EI-6917-01 17 30192440 30192440 C T UTP6 Silent p.A527A 0.19 TCGA-EI-6917-01 17 3030338 3030338 C T OR1G1 Missense_Mutation p.A170T 0.37 tolerated(0.7) possibly_damaging(0.654) TCGA-EI-6917-01 17 30315354 30315354 G A SUZ12 Missense_Mutation p.E347K 0.24 deleterious(0.01) possibly_damaging(0.463) TCGA-EI-6917-01 17 30348507 30348507 C A LRRC37B Missense_Mutation p.F114L 0.32 tolerated(0.3) benign(0.243) TCGA-EI-6917-01 17 30594932 30594932 C T RHBDL3 Silent p.V41V 0.28 TCGA-EI-6917-01 17 30791070 30791070 G A PSMD11 Missense_Mutation p.E108K 0.23 tolerated(0.38) benign(0.004) TCGA-EI-6917-01 17 31039083 31039083 G A MYO1D Nonsense_Mutation p.R682* 0.11 TCGA-EI-6917-01 17 32483065 32483065 C A ASIC2 Missense_Mutation p.D163Y 0.16 deleterious(0.04) probably_damaging(0.948) TCGA-EI-6917-01 17 32904624 32904624 G T C17orf102 Silent p.I142I 0.11 TCGA-EI-6917-01 17 33289967 33289967 C T ZNF830 3'UTR 0.26 TCGA-EI-6917-01 17 33313137 33313137 T C LIG3 Silent p.F226F 0.28 TCGA-EI-6917-01 17 33348399 33348399 C A RFFL Missense_Mutation p.E194D 0.23 tolerated(0.34) benign(0.021) TCGA-EI-6917-01 17 33454283 33454283 G A FNDC8 Silent p.S144S 0.18 TCGA-EI-6917-01 17 33591578 33591578 C T SLFN5 Silent p.S505S 0.28 TCGA-EI-6917-01 17 3365832 3365832 C A SPATA22 Missense_Mutation p.D92Y 0.22 tolerated(0.06) probably_damaging(0.982) TCGA-EI-6917-01 17 33679514 33679514 C T SLFN11 Missense_Mutation p.R856Q 0.22 tolerated(0.21) probably_damaging(0.999) TCGA-EI-6917-01 17 33679887 33679887 G A SLFN11 Missense_Mutation p.R732C 0.11 deleterious(0.01) benign(0.366) TCGA-EI-6917-01 17 3372612 3372612 C T SPATA22 Missense_Mutation p.R3Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 33768245 33768245 G T SLFN13 Missense_Mutation p.T688N 0.19 deleterious(0) probably_damaging(0.909) TCGA-EI-6917-01 17 33768339 33768339 C A SLFN13 Nonsense_Mutation p.E657* 0.14 TCGA-EI-6917-01 17 33806610 33806610 C T SLFN12L Missense_Mutation p.E207K 0.30 tolerated(0.75) benign(0.01) TCGA-EI-6917-01 17 33806943 33806943 C A SLFN12L Missense_Mutation p.D96Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 33875767 33875767 C T SLFN14 Missense_Mutation p.E744K 0.22 tolerated(0.37) benign(0.01) TCGA-EI-6917-01 17 33880255 33880255 G A SLFN14 Silent p.P466P 0.22 TCGA-EI-6917-01 17 33884587 33884587 C A SLFN14 Missense_Mutation p.K165N 0.38 tolerated(0.52) benign(0.157) TCGA-EI-6917-01 17 33984660 33984660 G A AP2B1 Silent p.T613T 0.20 TCGA-EI-6917-01 17 34199329 34199329 G A CCL5 3'UTR 0.20 TCGA-EI-6917-01 17 34308401 34308401 G A CCL16 Missense_Mutation p.S19L 0.35 tolerated(0.08) possibly_damaging(0.574) TCGA-EI-6917-01 17 3431394 3431394 C T TRPV3 Silent p.T476T 0.41 TCGA-EI-6917-01 17 34417453 34417453 G T CCL3 5'UTR 0.23 TCGA-EI-6917-01 17 34852245 34852245 C T MYO19 Silent p.S921S 0.32 TCGA-EI-6917-01 17 35295580 35295580 T C LHX1 Missense_Mutation p.V29A 0.39 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 17 35545296 35545296 C T ACACA Missense_Mutation p.R1566H 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 17 3559805 3559805 C A CTNS Missense_Mutation p.F162L 0.19 deleterious(0) possibly_damaging(0.721) TCGA-EI-6917-01 17 3572873 3572873 C T EMC6 3'UTR 0.12 TCGA-EI-6917-01 17 35939477 35939477 G A SYNRG Intron 0.35 TCGA-EI-6917-01 17 36104623 36104623 C T HNF1B Missense_Mutation p.D85N 0.13 deleterious(0.02) possibly_damaging(0.448) TCGA-EI-6917-01 17 36358855 36358855 T G RP11-1407O15.2 Missense_Mutation p.K279T 0.09 TCGA-EI-6917-01 17 36375137 36375137 T G RP11-1407O15.2 Missense_Mutation p.E127D 0.09 TCGA-EI-6917-01 17 36486164 36486164 A G GPR179 Silent p.R1096R 0.39 TCGA-EI-6917-01 17 36487357 36487357 C T GPR179 Missense_Mutation p.A699T 0.17 deleterious(0.01) benign(0.136) TCGA-EI-6917-01 17 36646745 36646745 C A ARHGAP23 Missense_Mutation p.L1035I 0.17 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 36734887 36734887 G A SRCIN1 Silent p.I60I 0.40 TCGA-EI-6917-01 17 36991593 36991593 G T C17orf98 Missense_Mutation p.S105Y 0.30 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 17 37333644 37333644 C T CACNB1 Missense_Mutation p.A431T 0.23 tolerated(0.21) probably_damaging(0.99) TCGA-EI-6917-01 17 37557686 37557686 C T FBXL20 5'UTR 0.44 TCGA-EI-6917-01 17 37571536 37571536 C T MED1 Missense_Mutation p.V452I 0.26 tolerated(0.15) benign(0.069) TCGA-EI-6917-01 17 37680977 37680977 G A CDK12 Missense_Mutation p.R1049H 0.26 probably_damaging(0.965) TCGA-EI-6917-01 17 37783678 37783678 C A PPP1R1B Missense_Mutation p.F11L 0.20 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 17 38142865 38142865 G A PSMD3 Missense_Mutation p.R150H 0.30 deleterious(0.04) benign(0.291) TCGA-EI-6917-01 17 38175765 38175765 C T MED24 3'UTR 0.31 TCGA-EI-6917-01 17 38189692 38189692 C T MED24 Missense_Mutation p.E193K 0.20 tolerated(0.25) probably_damaging(0.992) TCGA-EI-6917-01 17 38191574 38191574 C T MED24 Missense_Mutation p.G119R 0.35 deleterious(0) benign(0.341) TCGA-EI-6917-01 17 38245659 38245659 G A THRA Intron 0.27 TCGA-EI-6917-01 17 38447412 38447412 G A CDC6 Missense_Mutation p.R94Q 0.35 deleterious(0.04) possibly_damaging(0.786) TCGA-EI-6917-01 17 38452991 38452991 C T CDC6 Silent p.S407S 0.26 TCGA-EI-6917-01 17 3848043 3848043 C T ATP2A3 Silent p.A414A 0.33 TCGA-EI-6917-01 17 38548550 38548550 G T TOP2A Missense_Mutation p.F1336L 0.21 tolerated(0.57) benign(0.002) TCGA-EI-6917-01 17 38556259 38556259 C A TOP2A Missense_Mutation p.D1021Y 0.39 deleterious(0) possibly_damaging(0.903) TCGA-EI-6917-01 17 38813932 38813932 G A KRT222 Missense_Mutation p.P173S 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-EI-6917-01 17 38816348 38816348 G A KRT222 Missense_Mutation p.R113C 0.27 tolerated(0.3) benign(0.004) TCGA-EI-6917-01 17 38933342 38933342 G T KRT27 Missense_Mutation p.P430H 0.09 deleterious(0.03) benign(0.276) TCGA-EI-6917-01 17 39034451 39034451 C T KRT20 Missense_Mutation p.R362Q 0.18 deleterious(0.04) possibly_damaging(0.782) TCGA-EI-6917-01 17 39084731 39084731 C T KRT23 Silent p.K255K 0.22 TCGA-EI-6917-01 17 39120765 39120765 C T KRT39 Missense_Mutation p.A162T 0.31 deleterious(0.05) probably_damaging(0.999) TCGA-EI-6917-01 17 3917765 3917765 G A ZZEF1 Silent p.F2730F 0.18 TCGA-EI-6917-01 17 39253552 39253552 C T KRTAP4-8 3'UTR 0.36 TCGA-EI-6917-01 17 39280395 39280395 C A KRTAP4-12 5'UTR 0.29 TCGA-EI-6917-01 17 39550338 39550338 A G KRT31 Missense_Mutation p.V394A 0.16 tolerated(0.9) benign(0) TCGA-EI-6917-01 17 39580458 39580458 C A KRT37 Missense_Mutation p.E106D 0.29 deleterious(0) possibly_damaging(0.752) TCGA-EI-6917-01 17 39595099 39595099 A G KRT38 Silent p.I248I 0.21 TCGA-EI-6917-01 17 3961365 3961365 G T ZZEF1 Missense_Mutation p.F1696L 0.23 tolerated(0.24) benign(0.05) TCGA-EI-6917-01 17 39634648 39634648 C T KRT35 Missense_Mutation p.A322T 0.23 tolerated(0.29) benign(0.009) TCGA-EI-6917-01 17 39636987 39636987 C A KRT35 Missense_Mutation p.E121D 0.36 tolerated(0.34) benign(0.013) TCGA-EI-6917-01 17 39674955 39674955 C T KRT15 Missense_Mutation p.R42Q 0.21 tolerated(0.11) unknown(0) TCGA-EI-6917-01 17 39726158 39726158 C A KRT9 Nonsense_Mutation p.E279* 0.13 TCGA-EI-6917-01 17 39872094 39872094 C T GAST Silent p.F92F 0.28 TCGA-EI-6917-01 17 39925726 39925726 C T JUP Missense_Mutation p.E138K 0.27 deleterious(0.01) possibly_damaging(0.608) TCGA-EI-6917-01 17 40011396 40011396 A C KLHL11 Missense_Mutation p.F241L 0.37 tolerated(0.43) possibly_damaging(0.856) TCGA-EI-6917-01 17 40025799 40025799 G A ACLY Silent p.Y993Y 0.38 TCGA-EI-6917-01 17 40327650 40327650 C T KCNH4 Missense_Mutation p.D312N 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 40369242 40369242 T G STAT5B Missense_Mutation p.K439T 0.31 deleterious(0) possibly_damaging(0.45) TCGA-EI-6917-01 17 4072504 4072504 C T ANKFY1 Missense_Mutation p.R1164H 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 40729249 40729249 C A PSMC3IP Missense_Mutation p.K69N 0.13 deleterious(0.03) probably_damaging(0.967) TCGA-EI-6917-01 17 40855800 40855800 G A EZH1 Nonsense_Mutation p.R686* 0.26 TCGA-EI-6917-01 17 4098243 4098243 C T ANKFY1 Intron 0.31 TCGA-EI-6917-01 17 40986578 40986578 T G PSME3 Missense_Mutation p.L41R 0.27 deleterious(0) probably_damaging(0.948) TCGA-EI-6917-01 17 4100832 4100832 G A ANKFY1 Silent p.A355A 0.18 TCGA-EI-6917-01 17 41063558 41063558 C T G6PC 3'UTR 0.36 TCGA-EI-6917-01 17 41123662 41123662 C A PTGES3L Nonsense_Mutation p.E119* 0.34 TCGA-EI-6917-01 17 42232679 42232679 G A C17orf53 Missense_Mutation p.R558Q 0.20 deleterious(0.02) probably_damaging(0.946) TCGA-EI-6917-01 17 42335838 42335838 G A SLC4A1 Nonsense_Mutation p.R344* 0.38 TCGA-EI-6917-01 17 42462329 42462329 G A ITGA2B Silent p.F262F 0.12 TCGA-EI-6917-01 17 42882279 42882279 C T GJC1 Missense_Mutation p.E303K 0.25 tolerated(0.97) benign(0.041) TCGA-EI-6917-01 17 42882783 42882783 C T GJC1 Missense_Mutation p.E135K 0.26 deleterious(0) benign(0.102) TCGA-EI-6917-01 17 42937820 42937820 C T EFTUD2 Missense_Mutation p.E567K 0.28 tolerated(0.37) benign(0.048) TCGA-EI-6917-01 17 42992567 42992567 C T GFAP Silent p.A96A 0.20 TCGA-EI-6917-01 17 43197758 43197758 C A PLCD3 Missense_Mutation p.E206D 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 43308050 43308050 A G FMNL1 Missense_Mutation p.D70G 0.32 deleterious(0) unknown(0) TCGA-EI-6917-01 17 43332598 43332598 G A SPATA32 Silent p.F317F 0.29 TCGA-EI-6917-01 17 43332930 43332930 G A SPATA32 Missense_Mutation p.L207F 0.27 tolerated(0.07) probably_damaging(0.969) TCGA-EI-6917-01 17 43482302 43482302 G T ARHGAP27 Missense_Mutation p.F71L 0.19 tolerated(0.13) benign(0.126) TCGA-EI-6917-01 17 44061147 44061147 C T MAPT Missense_Mutation p.A326V 0.23 tolerated(0.14) benign(0.009) TCGA-EI-6917-01 17 44073982 44073982 C A MAPT Silent p.S593S 0.24 TCGA-EI-6917-01 17 44109031 44109031 C T KANSL1 Silent p.A1043A 0.23 TCGA-EI-6917-01 17 44116022 44116022 G A KANSL1 Missense_Mutation p.S808L 0.27 tolerated(0.08) benign(0.207) TCGA-EI-6917-01 17 44171967 44171967 G T KANSL1 Missense_Mutation p.R464S 0.33 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 17 44249491 44249491 C T KANSL1 Missense_Mutation p.A7T 0.26 deleterious(0) unknown(0) TCGA-EI-6917-01 17 4434062 4434062 G A SPNS2 Missense_Mutation p.A237T 0.27 tolerated(0.08) possibly_damaging(0.851) TCGA-EI-6917-01 17 44626580 44626580 T G LRRC37A2 Missense_Mutation p.F1359V 0.10 deleterious(0.05) possibly_damaging(0.728) TCGA-EI-6917-01 17 44782198 44782198 C A NSF Missense_Mutation p.S483Y 0.16 deleterious(0) possibly_damaging(0.594) TCGA-EI-6917-01 17 44847221 44847221 G A WNT3 Silent p.F172F 0.20 TCGA-EI-6917-01 17 4535479 4535479 G C ALOX15 Silent p.G546G 0.27 TCGA-EI-6917-01 17 45384951 45384951 G A ITGB3 Missense_Mutation p.R750Q 0.20 deleterious(0.02) probably_damaging(0.99) TCGA-EI-6917-01 17 45456599 45456599 G A EFCAB13 Missense_Mutation p.R521Q 0.15 tolerated(1) benign(0.001) TCGA-EI-6917-01 17 45821898 45821898 G T TBX21 Missense_Mutation p.E326D 0.19 tolerated(1) probably_damaging(0.992) TCGA-EI-6917-01 17 45993568 45993568 A C SP2 Missense_Mutation p.K44T 0.34 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 17 4645043 4645043 C T ZMYND15 Silent p.A253A 0.20 TCGA-EI-6917-01 17 46692052 46692052 G A HOXB8 Silent p.F5F 0.33 TCGA-EI-6917-01 17 46846401 46846401 C T TTLL6 Missense_Mutation p.A876T 0.24 tolerated_low_confidence(0.42) benign(0.022) TCGA-EI-6917-01 17 4685877 4685877 G A TM4SF5 Missense_Mutation p.R113Q 0.18 tolerated(0.57) benign(0.019) TCGA-EI-6917-01 17 47218646 47218646 A C B4GALNT2 Missense_Mutation p.I78L 0.22 tolerated(0.54) benign(0.002) TCGA-EI-6917-01 17 47218798 47218798 C T B4GALNT2 Silent p.Y128Y 0.19 TCGA-EI-6917-01 17 47246165 47246165 C T B4GALNT2 Silent p.C466C 0.24 TCGA-EI-6917-01 17 47656157 47656157 G A NXPH3 Missense_Mutation p.R85H 0.27 deleterious(0.03) benign(0.002) TCGA-EI-6917-01 17 47696399 47696399 G A SPOP Missense_Mutation p.L142F 0.23 deleterious(0.05) probably_damaging(1) TCGA-EI-6917-01 17 47781482 47781482 G A SLC35B1 Missense_Mutation p.S212L 0.39 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 17 4790926 4790926 G A MINK1 Silent p.R357R 0.26 TCGA-EI-6917-01 17 4805168 4805168 C T C17orf107 3'UTR 0.46 TCGA-EI-6917-01 17 48158692 48158692 C T ITGA3 Nonsense_Mutation p.R947* 0.16 TCGA-EI-6917-01 17 48245770 48245770 C T SGCA Missense_Mutation p.R141C 0.15 tolerated(0.08) benign(0.005) TCGA-EI-6917-01 17 4837969 4837969 C T GP1BA 3'UTR 0.23 TCGA-EI-6917-01 17 4859430 4859430 G A ENO3 Silent p.S353S 0.44 TCGA-EI-6917-01 17 4864089 4864089 G A SPAG7 Missense_Mutation p.R49C 0.20 deleterious(0) possibly_damaging(0.868) TCGA-EI-6917-01 17 48773286 48773286 A G ANKRD40 3'UTR 0.30 TCGA-EI-6917-01 17 48823102 48823102 G A LUC7L3 Missense_Mutation p.E239K 0.18 tolerated(0.11) unknown(0) TCGA-EI-6917-01 17 49270837 49270837 G A MBTD1 Silent p.Y469Y 0.23 TCGA-EI-6917-01 17 49713288 49713288 C A CA10 Missense_Mutation p.M239I 0.22 tolerated(0.59) benign(0.003) TCGA-EI-6917-01 17 4996241 4996241 A C ZFP3 Missense_Mutation p.E481A 0.14 deleterious(0.01) benign(0.058) TCGA-EI-6917-01 17 5009643 5009643 G A ZNF232 Missense_Mutation p.P271S 0.30 tolerated(0.43) possibly_damaging(0.803) TCGA-EI-6917-01 17 5085705 5085705 C A ZNF594 Missense_Mutation p.R616I 0.21 deleterious(0.03) probably_damaging(0.948) TCGA-EI-6917-01 17 51900733 51900733 G A KIF2B Silent p.T113T 0.30 TCGA-EI-6917-01 17 51901841 51901841 C T KIF2B Silent p.L483L 0.21 TCGA-EI-6917-01 17 5324665 5324665 A G RPAIN Missense_Mutation p.Y44C 0.30 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 17 5384696 5384696 G A DERL2 Nonsense_Mutation p.R83* 0.25 TCGA-EI-6917-01 17 5393474 5393474 C A MIS12 3'UTR 0.24 TCGA-EI-6917-01 17 54672078 54672078 G A NOG Missense_Mutation p.G165D 0.21 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 17 56285884 56285884 G A MKS1 Missense_Mutation p.S362F 0.27 tolerated(0.08) benign(0.185) TCGA-EI-6917-01 17 56350132 56350132 C T MPO Missense_Mutation p.R590H 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 17 56499613 56499613 C A HSF5 3'UTR 0.20 TCGA-EI-6917-01 17 56598250 56598250 G A SEPT4 Intron 0.20 TCGA-EI-6917-01 17 56598648 56598648 G A SEPT4 Missense_Mutation p.R376W 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 56619103 56619103 G T C17orf47 3'UTR 0.25 TCGA-EI-6917-01 17 56621153 56621153 C T C17orf47 Missense_Mutation p.R132Q 0.26 deleterious(0.05) benign(0.001) TCGA-EI-6917-01 17 56649328 56649328 G T TEX14 Missense_Mutation p.S1270Y 0.22 deleterious(0.04) possibly_damaging(0.883) TCGA-EI-6917-01 17 57058382 57058382 A C PPM1E Missense_Mutation p.K753T 0.11 deleterious_low_confidence(0.03) possibly_damaging(0.544) TCGA-EI-6917-01 17 57141724 57141724 C T TRIM37 Silent p.E284E 0.28 TCGA-EI-6917-01 17 57287607 57287607 C A SMG8 Missense_Mutation p.F65L 0.21 tolerated(0.69) benign(0.018) TCGA-EI-6917-01 17 57288847 57288847 T G SMG8 Missense_Mutation p.L479V 0.34 tolerated(0.2) benign(0.096) TCGA-EI-6917-01 17 57725607 57725607 C T CLTC Missense_Mutation p.R176C 0.16 deleterious(0) probably_damaging(0.964) TCGA-EI-6917-01 17 57742194 57742194 G A CLTC Missense_Mutation p.R523Q 0.29 deleterious(0.03) benign(0.031) TCGA-EI-6917-01 17 57771247 57771247 G A CLTC 3'UTR 0.33 TCGA-EI-6917-01 17 58503559 58503559 G A C17orf64 Missense_Mutation p.R64Q 0.18 deleterious(0.02) possibly_damaging(0.902) TCGA-EI-6917-01 17 58508545 58508545 C A C17orf64 Missense_Mutation p.S210Y 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.868) TCGA-EI-6917-01 17 58508700 58508700 A C C17orf64 3'UTR 0.20 TCGA-EI-6917-01 17 58711255 58711255 G A PPM1D Missense_Mutation p.R248Q 0.39 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 58740668 58740668 G T PPM1D Nonsense_Mutation p.E525* 0.32 TCGA-EI-6917-01 17 58885398 58885398 G T BCAS3 Missense_Mutation p.R146I 0.22 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 17 59067542 59067542 C T BCAS3 Missense_Mutation p.R478C 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 17 59857686 59857686 G A BRIP1 Missense_Mutation p.S624L 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 59876513 59876513 T C BRIP1 Missense_Mutation p.I430V 0.27 tolerated(0.07) benign(0.098) TCGA-EI-6917-01 17 59989401 59989401 C T INTS2 Missense_Mutation p.R235Q 0.20 deleterious(0.03) possibly_damaging(0.889) TCGA-EI-6917-01 17 61278183 61278183 A G TANC2 Missense_Mutation p.T138A 0.23 deleterious(0.03) possibly_damaging(0.688) TCGA-EI-6917-01 17 61574676 61574676 G A ACE Silent p.R1290R 0.58 TCGA-EI-6917-01 17 61907214 61907214 C T PSMC5 Missense_Mutation p.R57C 0.19 tolerated(0.08) benign(0.021) TCGA-EI-6917-01 17 61911078 61911078 C T SMARCD2 Missense_Mutation p.D396N 0.25 deleterious(0.04) probably_damaging(0.99) TCGA-EI-6917-01 17 61972940 61972940 G A CSH1 Missense_Mutation p.R117W 0.29 deleterious(0) benign(0.005) TCGA-EI-6917-01 17 61988540 61988540 C T CSHL1 Intron 0.33 TCGA-EI-6917-01 17 61994807 61994807 G A GH1 Silent p.F172F 0.24 TCGA-EI-6917-01 17 62020408 62020408 C T SCN4A Missense_Mutation p.D1356N 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 62818139 62818139 A G RNU7-115P 3'Flank 0.29 TCGA-EI-6917-01 17 62892939 62892939 G A LRRC37A3 Missense_Mutation p.S146L 0.13 deleterious(0.02) benign(0.124) TCGA-EI-6917-01 17 6358726 6358726 C A PITPNM3 Missense_Mutation p.D953Y 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-EI-6917-01 17 63637170 63637170 C T CEP112 Missense_Mutation p.R904Q 0.23 tolerated(0.12) probably_damaging(0.997) TCGA-EI-6917-01 17 65119099 65119099 G A HELZ Missense_Mutation p.S1206L 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.844) TCGA-EI-6917-01 17 65343510 65343510 C T PSMD12 Missense_Mutation p.R201Q 0.25 tolerated(0.55) possibly_damaging(0.753) TCGA-EI-6917-01 17 65740024 65740024 A G NOL11 3'UTR 0.38 TCGA-EI-6917-01 17 66246368 66246368 G A AMZ2 Missense_Mutation p.A14T 0.24 deleterious(0) possibly_damaging(0.721) TCGA-EI-6917-01 17 66246588 66246588 G A AMZ2 Missense_Mutation p.R87H 0.14 tolerated(0.25) benign(0.001) TCGA-EI-6917-01 17 66274363 66274363 G A SLC16A6 Silent p.F33F 0.26 TCGA-EI-6917-01 17 66423319 66423319 C T WIPI1 Silent p.A383A 0.33 TCGA-EI-6917-01 17 66551756 66551756 C T FAM20A Missense_Mutation p.S178N 0.43 tolerated(0.78) benign(0.005) TCGA-EI-6917-01 17 66878060 66878060 A C ABCA8 Missense_Mutation p.F1257C 0.19 tolerated(0.09) benign(0.021) TCGA-EI-6917-01 17 66878114 66878114 A G ABCA8 Missense_Mutation p.V1239A 0.18 tolerated(0.2) benign(0.029) TCGA-EI-6917-01 17 66924082 66924082 C T ABCA8 Silent p.A416A 0.26 TCGA-EI-6917-01 17 66979921 66979921 C A ABCA9 Missense_Mutation p.K1523N 0.24 tolerated(0.11) benign(0.265) TCGA-EI-6917-01 17 66980306 66980306 G A ABCA9 Missense_Mutation p.R1464W 0.28 deleterious(0) possibly_damaging(0.477) TCGA-EI-6917-01 17 67013894 67013894 C T ABCA9 Missense_Mutation p.R935Q 0.26 tolerated(0.52) benign(0.015) TCGA-EI-6917-01 17 67101750 67101750 C T ABCA6 Missense_Mutation p.A865T 0.25 tolerated(0.39) possibly_damaging(0.529) TCGA-EI-6917-01 17 67101751 67101751 G A ABCA6 Silent p.I864I 0.24 TCGA-EI-6917-01 17 67106980 67106980 A G ABCA6 Missense_Mutation p.V745A 0.25 tolerated(0.09) possibly_damaging(0.76) TCGA-EI-6917-01 17 67144872 67144872 C A ABCA10 3'UTR 0.26 TCGA-EI-6917-01 17 6716215 6716215 C T TEKT1 Missense_Mutation p.A263T 0.15 deleterious(0) probably_damaging(0.973) TCGA-EI-6917-01 17 67171651 67171651 C A ABCA10 Missense_Mutation p.D925Y 0.24 tolerated(1) benign(0.021) TCGA-EI-6917-01 17 67217935 67217935 C A ABCA10 Nonsense_Mutation p.E101* 0.24 TCGA-EI-6917-01 17 67243706 67243706 C T ABCA5 Missense_Mutation p.R1634Q 0.18 tolerated(0.58) possibly_damaging(0.691) TCGA-EI-6917-01 17 67247996 67247996 C T ABCA5 Missense_Mutation p.R1476Q 0.16 tolerated(0.15) probably_damaging(0.982) TCGA-EI-6917-01 17 67285382 67285382 T G ABCA5 Missense_Mutation p.K613T 0.34 tolerated(0.05) benign(0.426) TCGA-EI-6917-01 17 6928507 6928507 C T BCL6B Missense_Mutation p.R293C 0.42 tolerated(0.06) benign(0) TCGA-EI-6917-01 17 7010575 7010575 G A ASGR2 Silent p.C162C 0.33 TCGA-EI-6917-01 17 71167138 71167138 C T SSTR2 3'UTR 0.13 TCGA-EI-6917-01 17 7132938 7132938 C T DVL2 Missense_Mutation p.R239Q 0.28 deleterious(0.01) possibly_damaging(0.877) TCGA-EI-6917-01 17 71412023 71412023 G A SDK2 Silent p.I765I 0.23 TCGA-EI-6917-01 17 71427672 71427672 G A SDK2 Silent p.V483V 0.32 TCGA-EI-6917-01 17 72350923 72350923 C T KIF19 Silent p.L903L 0.19 TCGA-EI-6917-01 17 72436468 72436468 G A GPRC5C Missense_Mutation p.E230K 0.28 tolerated(0.78) benign(0.005) TCGA-EI-6917-01 17 72473581 72473581 G A CD300A Silent p.P180P 0.17 TCGA-EI-6917-01 17 72613377 72613377 T C CD300E Missense_Mutation p.T90A 0.25 deleterious(0.01) probably_damaging(0.922) TCGA-EI-6917-01 17 72769718 72769718 C A NAT9 Missense_Mutation p.D63Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 17 72927245 72927245 C A OTOP2 Silent p.V505V 0.28 TCGA-EI-6917-01 17 73132093 73132093 C A HN1 3'UTR 0.21 TCGA-EI-6917-01 17 73493239 73493239 G A KIAA0195 Missense_Mutation p.D1123N 0.35 tolerated(0.06) probably_damaging(1) TCGA-EI-6917-01 17 73624376 73624376 G A RECQL5 Silent p.G909G 0.18 TCGA-EI-6917-01 17 7405341 7405341 G T POLR2A Missense_Mutation p.E824D 0.19 probably_damaging(0.985) TCGA-EI-6917-01 17 7416943 7416943 C T POLR2A Missense_Mutation p.S1787F 0.25 unknown(0) TCGA-EI-6917-01 17 74283293 74283293 A G QRICH2 Missense_Mutation p.S1165P 0.18 deleterious(0.02) benign(0.099) TCGA-EI-6917-01 17 74300966 74300966 G A QRICH2 Silent p.F31F 0.22 TCGA-EI-6917-01 17 74300977 74300977 G A QRICH2 Missense_Mutation p.R28W 0.23 deleterious(0.03) benign(0.296) TCGA-EI-6917-01 17 74388060 74388060 G A UBE2O Silent p.G1027G 0.21 TCGA-EI-6917-01 17 75186993 75186993 C T SEC14L1 Missense_Mutation p.R58C 0.33 deleterious(0) possibly_damaging(0.853) TCGA-EI-6917-01 17 75208079 75208079 C T SEC14L1 Silent p.F553F 0.36 TCGA-EI-6917-01 17 75369592 75369592 G A SEPT9 Intron 0.18 TCGA-EI-6917-01 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.15 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.26 TCGA-EI-6917-01 17 76093868 76093868 C T TNRC6C Missense_Mutation p.S1447L 0.26 deleterious(0.01) benign(0.31) TCGA-EI-6917-01 17 7644296 7644296 G A DNAH2 Missense_Mutation p.D559N 0.23 probably_damaging(0.951) TCGA-EI-6917-01 17 76447599 76447599 G T DNAH17 Silent p.L3548L 0.32 TCGA-EI-6917-01 17 76450685 76450685 A G DNAH17 Missense_Mutation p.S3411P 0.43 probably_damaging(0.999) TCGA-EI-6917-01 17 76455200 76455200 G A DNAH17 Silent p.I3234I 0.35 TCGA-EI-6917-01 17 76455907 76455907 G A DNAH17 Silent p.F3190F 0.21 TCGA-EI-6917-01 17 76471849 76471849 C T DNAH17 Missense_Mutation p.D2727N 0.24 benign(0.039) TCGA-EI-6917-01 17 76496408 76496408 G A DNAH17-AS1 Missense_Mutation p.A114T 0.23 unknown(0) TCGA-EI-6917-01 17 76497340 76497340 G A DNAH17 Silent p.C1789C 0.48 TCGA-EI-6917-01 17 76548801 76548801 C T DNAH17 Silent p.T755T 0.26 TCGA-EI-6917-01 17 76556908 76556908 C T DNAH17 Missense_Mutation p.D649N 0.12 benign(0.128) TCGA-EI-6917-01 17 76887514 76887515 - T DDC8 Frame_Shift_Ins p.H358Tfs*87 0.22 TCGA-EI-6917-01 17 77043990 77043990 C T C1QTNF1 Silent p.F222F 0.29 TCGA-EI-6917-01 17 7708678 7708678 G A DNAH2 Missense_Mutation p.E3137K 0.17 possibly_damaging(0.705) TCGA-EI-6917-01 17 77093805 77093805 G A RBFOX3 Silent p.V197V 0.14 TCGA-EI-6917-01 17 77102834 77102834 G A RBFOX3 Missense_Mutation p.L87F 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-EI-6917-01 17 7721656 7721656 G A DNAH2 Missense_Mutation p.D3472N 0.31 probably_damaging(0.973) TCGA-EI-6917-01 17 7792380 7792380 C A CHD3 Intron 0.23 TCGA-EI-6917-01 17 78109173 78109173 C T EIF4A3 3'UTR 0.30 TCGA-EI-6917-01 17 78112043 78112043 G A EIF4A3 Silent p.F255F 0.16 TCGA-EI-6917-01 17 78237405 78237405 G A RNF213 5'UTR 0.21 TCGA-EI-6917-01 17 78320985 78320985 C A RNF213 Missense_Mutation p.F2950L 0.26 probably_damaging(0.995) TCGA-EI-6917-01 17 78324113 78324113 G A RNF213 Silent p.T3367T 0.18 TCGA-EI-6917-01 17 78350131 78350131 G A RNF213 Missense_Mutation p.E4406K 0.19 benign(0.096) TCGA-EI-6917-01 17 78444590 78444590 G A NPTX1 3'UTR 0.18 TCGA-EI-6917-01 17 7847822 7847822 G A CNTROB Missense_Mutation p.E534K 0.11 tolerated(0.08) benign(0.294) TCGA-EI-6917-01 17 78854265 78854265 G A RPTOR Silent p.S520S 0.12 TCGA-EI-6917-01 17 79102344 79102344 G A AATK Missense_Mutation p.L114F 0.28 tolerated(0.07) possibly_damaging(0.757) TCGA-EI-6917-01 17 79414166 79414166 G A RP11-1055B8.7 Missense_Mutation p.A1090T 0.35 benign(0.002) TCGA-EI-6917-01 17 79517798 79517798 A G C17orf70 Missense_Mutation p.V241A 0.25 deleterious(0) benign(0.375) TCGA-EI-6917-01 17 79990843 79990843 C A RAC3 Missense_Mutation p.F82L 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.6) TCGA-EI-6917-01 17 80014406 80014406 C T GPS1 Missense_Mutation p.R406C 0.35 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 17 80129699 80129699 C T CCDC57 Missense_Mutation p.R587Q 0.25 tolerated(0.75) benign(0.027) TCGA-EI-6917-01 17 80207422 80207422 C T CSNK1D Silent p.R314R 0.30 TCGA-EI-6917-01 17 80275467 80275467 C T CD7 5'UTR 0.18 TCGA-EI-6917-01 17 8219339 8219339 A G ARHGEF15 Missense_Mutation p.D526G 0.32 deleterious(0.05) possibly_damaging(0.76) TCGA-EI-6917-01 17 8508233 8508233 A C MYH10 Missense_Mutation p.I138S 0.13 benign(0.392) TCGA-EI-6917-01 17 9631772 9631772 G A USP43 Missense_Mutation p.R946Q 0.40 tolerated(0.14) benign(0.025) TCGA-EI-6917-01 17 9801500 9801500 A C RCVRN Missense_Mutation p.F172C 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 18 10672796 10672796 G A PIEZO2 Missense_Mutation p.L2633F 0.20 deleterious(0) benign(0.086) TCGA-EI-6917-01 18 10696504 10696504 G T PIEZO2 Missense_Mutation p.F2174L 0.35 deleterious(0) possibly_damaging(0.644) TCGA-EI-6917-01 18 11852606 11852606 G T CHMP1B 3'UTR 0.25 TCGA-EI-6917-01 18 11868596 11868596 G A GNAL Missense_Mutation p.R322Q 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-EI-6917-01 18 11872284 11872284 C T GNAL Missense_Mutation p.S350F 0.15 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 18 12277222 12277222 C T CIDEA Missense_Mutation p.R205W 0.15 deleterious(0.03) possibly_damaging(0.517) TCGA-EI-6917-01 18 12325982 12325982 C A TUBB6 Missense_Mutation p.F398L 0.17 deleterious_low_confidence(0) benign(0.054) TCGA-EI-6917-01 18 12326120 12326120 C T TUBB6 Silent p.I444I 0.15 TCGA-EI-6917-01 18 12699061 12699061 C T CEP76 Missense_Mutation p.R146H 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 18 12699070 12699070 C T CEP76 Missense_Mutation p.R143Q 0.26 deleterious(0.02) possibly_damaging(0.873) TCGA-EI-6917-01 18 13001472 13001472 G T CEP192 Missense_Mutation p.A61S 0.42 deleterious(0.02) benign(0.359) TCGA-EI-6917-01 18 13018545 13018545 G A CEP192 Missense_Mutation p.D286N 0.30 tolerated(0.16) benign(0.053) TCGA-EI-6917-01 18 13056182 13056182 G A CEP192 Missense_Mutation p.R1198K 0.24 tolerated(0.23) benign(0.039) TCGA-EI-6917-01 18 13087064 13087064 G A CEP192 Missense_Mutation p.V1889I 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6917-01 18 13124695 13124695 T G CEP192 Missense_Mutation p.L2514V 0.16 tolerated(0.12) probably_damaging(0.943) TCGA-EI-6917-01 18 13645128 13645128 C A LDLRAD4 Silent p.I131I 0.19 TCGA-EI-6917-01 18 13645228 13645228 G A LDLRAD4 Missense_Mutation p.E165K 0.14 tolerated(0.05) probably_damaging(0.993) TCGA-EI-6917-01 18 13666366 13666366 G T FAM210A 3'UTR 0.30 TCGA-EI-6917-01 18 13741530 13741530 C T RNMT Missense_Mutation p.R272C 0.14 tolerated(0.11) benign(0.009) TCGA-EI-6917-01 18 14183749 14183749 G T ANKRD20A5P RNA 0.17 TCGA-EI-6917-01 18 14791465 14791465 C T ANKRD30B Silent p.F600F 0.23 TCGA-EI-6917-01 18 14803738 14803738 C T ANKRD30B Silent p.F733F 0.22 TCGA-EI-6917-01 18 14851894 14851894 C A ANKRD30B Missense_Mutation p.N1198K 0.23 tolerated(0.14) benign(0.003) TCGA-EI-6917-01 18 14852240 14852240 C T ANKRD30B Nonsense_Mutation p.R1314* 0.29 TCGA-EI-6917-01 18 18586428 18586428 C T ROCK1 Missense_Mutation p.R590Q 0.22 tolerated(0.59) possibly_damaging(0.63) TCGA-EI-6917-01 18 19378145 19378145 C T MIB1 Missense_Mutation p.S398F 0.26 deleterious(0) benign(0.024) TCGA-EI-6917-01 18 19399480 19399480 C A MIB1 Missense_Mutation p.H568N 0.14 deleterious(0) probably_damaging(0.94) TCGA-EI-6917-01 18 20573024 20573024 A G RBBP8 Missense_Mutation p.I412V 0.37 tolerated(1) benign(0.001) TCGA-EI-6917-01 18 21148839 21148839 C T NPC1 Silent p.T137T 0.46 TCGA-EI-6917-01 18 21644103 21644103 G T TTC39C Splice_Site p.X56_splice 0.27 TCGA-EI-6917-01 18 22040626 22040626 A C HRH4 5'UTR 0.32 TCGA-EI-6917-01 18 225126 225126 T G THOC1 Missense_Mutation p.N367T 0.21 tolerated(1) benign(0.002) TCGA-EI-6917-01 18 22806582 22806582 C A ZNF521 Nonsense_Mutation p.E434* 0.24 TCGA-EI-6917-01 18 23758827 23758827 C T PSMA8 Nonsense_Mutation p.R177* 0.27 TCGA-EI-6917-01 18 24436165 24436165 G A AQP4 3'UTR 0.25 TCGA-EI-6917-01 18 2763774 2763774 C T SMCHD1 Missense_Mutation p.S1569L 0.18 tolerated(0.17) benign(0.121) TCGA-EI-6917-01 18 2772321 2772321 C T SMCHD1 Missense_Mutation p.S1709L 0.22 tolerated(0.5) benign(0.002) TCGA-EI-6917-01 18 29044273 29044273 A C DSG3 Missense_Mutation p.K400T 0.15 tolerated(0.45) benign(0.009) TCGA-EI-6917-01 18 29046540 29046540 G A DSG3 Missense_Mutation p.D487N 0.21 tolerated(0.05) benign(0.003) TCGA-EI-6917-01 18 2929124 2929124 C T LPIN2 Missense_Mutation p.E497K 0.13 deleterious(0.03) possibly_damaging(0.848) TCGA-EI-6917-01 18 29454415 29454415 C T TRAPPC8 Intron 0.16 TCGA-EI-6917-01 18 2945674 2945674 G A LPIN2 Intron 0.25 TCGA-EI-6917-01 18 29489639 29489639 C T TRAPPC8 Missense_Mutation p.E286K 0.36 tolerated(0.72) benign(0.069) TCGA-EI-6917-01 18 2951191 2951191 G T LPIN2 Missense_Mutation p.S151Y 0.22 deleterious(0.03) possibly_damaging(0.713) TCGA-EI-6917-01 18 29706735 29706735 G T RNF138 Missense_Mutation p.R214I 0.25 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 18 29787233 29787233 A G MEP1B Missense_Mutation p.N189S 0.18 tolerated(0.07) possibly_damaging(0.672) TCGA-EI-6917-01 18 29867558 29867558 G A GAREM Silent p.F334F 0.23 TCGA-EI-6917-01 18 30092930 30092930 C A WBP11P1 RNA 0.24 TCGA-EI-6917-01 18 30322013 30322013 C A KLHL14 Splice_Site p.X316_splice 0.32 TCGA-EI-6917-01 18 30846961 30846961 G T CCDC178 Missense_Mutation p.S443Y 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-EI-6917-01 18 31323411 31323411 T C ASXL3 Missense_Mutation p.V1200A 0.14 benign(0.005) TCGA-EI-6917-01 18 31326157 31326157 C T ASXL3 Silent p.F2115F 0.40 TCGA-EI-6917-01 18 31599499 31599499 C T NOL4 Missense_Mutation p.G280E 0.23 tolerated(0.16) probably_damaging(0.928) TCGA-EI-6917-01 18 32438277 32438277 C T DTNA Missense_Mutation p.R434W 0.37 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 18 32446121 32446121 C T DTNA Intron 0.21 TCGA-EI-6917-01 18 32455266 32455266 C T DTNA Missense_Mutation p.P516S 0.25 tolerated(0.15) possibly_damaging(0.45) TCGA-EI-6917-01 18 32833937 32833937 C A ZSCAN30 Missense_Mutation p.R321I 0.16 deleterious(0) possibly_damaging(0.52) TCGA-EI-6917-01 18 32887116 32887116 C T ZNF271 RNA 0.38 TCGA-EI-6917-01 18 32888181 32888181 C A ZNF271 RNA 0.17 TCGA-EI-6917-01 18 32917491 32917491 C A ZNF24 Missense_Mutation p.R271I 0.23 deleterious(0) possibly_damaging(0.499) TCGA-EI-6917-01 18 32949578 32949578 C A ZNF396 Missense_Mutation p.K203N 0.29 deleterious(0.03) possibly_damaging(0.895) TCGA-EI-6917-01 18 33694076 33694076 G A SLC39A6 Silent p.S609S 0.22 TCGA-EI-6917-01 18 33846751 33846751 G A MOCOS Missense_Mutation p.D817N 0.16 tolerated(0.18) benign(0.355) TCGA-EI-6917-01 18 34174854 34174854 G A FHOD3 Silent p.T237T 0.24 TCGA-EI-6917-01 18 3456483 3456483 C A TGIF1 Missense_Mutation p.L179I 0.31 deleterious(0) probably_damaging(0.989) TCGA-EI-6917-01 18 3879998 3879998 G A DLGAP1 Missense_Mutation p.S24L 0.21 tolerated(0.65) benign(0.013) TCGA-EI-6917-01 18 40853899 40853899 G A SYT4 Silent p.F165F 0.18 TCGA-EI-6917-01 18 40854161 40854161 T G SYT4 Missense_Mutation p.K78T 0.20 tolerated(0.64) benign(0.007) TCGA-EI-6917-01 18 42531445 42531445 A C SETBP1 Missense_Mutation p.N714H 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-EI-6917-01 18 43219805 43219805 C T SLC14A2 Missense_Mutation p.S313L 0.18 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 18 43329894 43329894 G T SLC14A1 Missense_Mutation p.R439I 0.35 deleterious(0.02) benign(0.038) TCGA-EI-6917-01 18 43674991 43674991 C T ATP5A1 Intron 0.13 TCGA-EI-6917-01 18 44057903 44057903 G T LOXHD1 Missense_Mutation p.N1007K 0.30 tolerated(0.93) probably_damaging(0.998) TCGA-EI-6917-01 18 44089771 44089771 G A LOXHD1 Missense_Mutation p.R692W 0.16 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 18 44140131 44140131 G A LOXHD1 5'Flank 0.20 TCGA-EI-6917-01 18 44424085 44424085 C A PIAS2 Nonsense_Mutation p.E325* 0.20 TCGA-EI-6917-01 18 47788478 47788478 G A CCDC11 Missense_Mutation p.R61C 0.09 tolerated(0.16) benign(0.015) TCGA-EI-6917-01 18 47908532 47908532 G T SKA1 Missense_Mutation p.D83Y 0.15 deleterious(0) possibly_damaging(0.827) TCGA-EI-6917-01 18 48603033 48603033 G A SMAD4 Missense_Mutation p.R445Q 0.29 tolerated(0.17) benign(0.141) TCGA-EI-6917-01 18 48703801 48703801 G T MEX3C Missense_Mutation p.F300L 0.21 deleterious(0.02) probably_damaging(0.991) TCGA-EI-6917-01 18 50451656 50451656 A G DCC Missense_Mutation p.T301A 0.19 tolerated(0.07) benign(0.062) TCGA-EI-6917-01 18 50832017 50832017 C T DCC Nonsense_Mutation p.R661* 0.33 TCGA-EI-6917-01 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.33 TCGA-EI-6917-01 18 5145469 5145469 C T C18orf42 3'UTR 0.17 TCGA-EI-6917-01 18 5291454 5291454 T C ZBTB14 Silent p.E251E 0.22 TCGA-EI-6917-01 18 54423815 54423815 G T WDR7 Missense_Mutation p.G664V 0.28 deleterious(0.05) probably_damaging(0.919) TCGA-EI-6917-01 18 55021681 55021681 G A ST8SIA3 Silent p.T76T 0.34 TCGA-EI-6917-01 18 55024205 55024205 C T ST8SIA3 Missense_Mutation p.R122W 0.40 probably_damaging(0.94) TCGA-EI-6917-01 18 55103734 55103734 C T ONECUT2 Silent p.F262F 0.15 TCGA-EI-6917-01 18 55221537 55221537 C T FECH Silent p.T350T 0.15 TCGA-EI-6917-01 18 55335537 55335537 C T ATP8B1 Intron 0.35 TCGA-EI-6917-01 18 55361854 55361854 C T ATP8B1 Missense_Mutation p.R330K 0.24 tolerated(0.09) benign(0.37) TCGA-EI-6917-01 18 56050549 56050549 C T NEDD4L Silent p.I808I 0.19 TCGA-EI-6917-01 18 56149069 56149069 C T ALPK2 Missense_Mutation p.E2167K 0.24 deleterious(0.02) possibly_damaging(0.564) TCGA-EI-6917-01 18 56586435 56586435 G T ZNF532 Missense_Mutation p.D306Y 0.22 deleterious(0.04) possibly_damaging(0.594) TCGA-EI-6917-01 18 57006123 57006123 G A LMAN1 Missense_Mutation p.R340C 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-EI-6917-01 18 57022756 57022756 G A LMAN1 Nonsense_Mutation p.R117* 0.18 TCGA-EI-6917-01 18 57103356 57103356 G A CCBE1 Silent p.F335F 0.12 TCGA-EI-6917-01 18 57136777 57136777 G A CCBE1 Silent p.L110L 0.34 TCGA-EI-6917-01 18 580508 580508 C T CETN1 Missense_Mutation p.R34W 0.18 deleterious(0) possibly_damaging(0.636) TCGA-EI-6917-01 18 59157671 59157671 C A CDH20 5'UTR 0.21 TCGA-EI-6917-01 18 61071041 61071041 C T VPS4B Missense_Mutation p.R128Q 0.25 deleterious(0) benign(0.065) TCGA-EI-6917-01 18 61160280 61160280 G T SERPINB5 Missense_Mutation p.K173N 0.39 tolerated(0.09) probably_damaging(0.994) TCGA-EI-6917-01 18 61231254 61231254 G A SERPINB12 Silent p.E182E 0.27 TCGA-EI-6917-01 18 61260157 61260157 G A SERPINB13 Missense_Mutation p.D142N 0.25 deleterious(0) probably_damaging(0.97) TCGA-EI-6917-01 18 61471661 61471661 C T SERPINB7 Missense_Mutation p.S312L 0.22 deleterious(0.04) benign(0.254) TCGA-EI-6917-01 18 61584743 61584743 A C SERPINB10 Missense_Mutation p.K74N 0.24 tolerated(0.08) probably_damaging(0.942) TCGA-EI-6917-01 18 65178397 65178397 G T DSEL Missense_Mutation p.S1160Y 0.14 deleterious(0.01) probably_damaging(0.946) TCGA-EI-6917-01 18 65180223 65180223 G T DSEL Silent p.I551I 0.17 TCGA-EI-6917-01 18 65180855 65180855 C A DSEL Missense_Mutation p.D341Y 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 18 67266701 67266701 G A DOK6 Missense_Mutation p.D86N 0.21 tolerated(0.06) possibly_damaging(0.846) TCGA-EI-6917-01 18 67727099 67727099 C A RTTN Nonsense_Mutation p.E1643* 0.17 TCGA-EI-6917-01 18 67759356 67759356 C T RTTN Missense_Mutation p.R1378Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 18 67836155 67836155 C T RTTN Missense_Mutation p.R542Q 0.31 tolerated(0.47) benign(0.002) TCGA-EI-6917-01 18 67994336 67994336 G T SOCS6 3'UTR 0.21 TCGA-EI-6917-01 18 70450978 70450978 C T NETO1 Missense_Mutation p.R268H 0.23 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 18 70451132 70451132 G A NETO1 Nonsense_Mutation p.R217* 0.26 TCGA-EI-6917-01 18 7046322 7046322 G A LAMA1 Silent p.I271I 0.23 TCGA-EI-6917-01 18 71740932 71740932 C A FBXO15 Nonsense_Mutation p.E433* 0.32 TCGA-EI-6917-01 18 72103785 72103785 C T FAM69C Missense_Mutation p.R404H 0.22 tolerated(0.2) benign(0.047) TCGA-EI-6917-01 18 72234559 72234559 G A CNDP1 Missense_Mutation p.R216Q 0.18 tolerated(0.61) benign(0.004) TCGA-EI-6917-01 18 72244255 72244255 C T CNDP1 Silent p.F331F 0.26 TCGA-EI-6917-01 18 72244256 72244256 G A CNDP1 Missense_Mutation p.D332N 0.30 tolerated(0.44) benign(0.006) TCGA-EI-6917-01 18 7231725 7231725 C T LRRC30 Missense_Mutation p.R197C 0.16 deleterious(0.02) possibly_damaging(0.855) TCGA-EI-6917-01 18 724435 724435 C A YES1 Nonsense_Mutation p.E541* 0.13 TCGA-EI-6917-01 18 72775923 72775923 C T ZNF407 Silent p.G2082G 0.21 TCGA-EI-6917-01 18 72914210 72914210 C T ZADH2 Missense_Mutation p.E99K 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 18 73000406 73000406 C T TSHZ1 Missense_Mutation p.S970L 0.39 deleterious(0) benign(0.06) TCGA-EI-6917-01 18 76753938 76753938 C T SALL3 Silent p.F649F 0.37 TCGA-EI-6917-01 18 77037167 77037167 G A ATP9B Missense_Mutation p.R461H 0.22 deleterious(0) probably_damaging(0.948) TCGA-EI-6917-01 18 77475416 77475416 G A CTDP1 Silent p.E652E 0.29 TCGA-EI-6917-01 18 77728106 77728106 C T HSBP1L1 Missense_Mutation p.R46C 0.19 deleterious(0.02) probably_damaging(0.968) TCGA-EI-6917-01 18 77894028 77894028 G T ADNP2 Missense_Mutation p.E244D 0.35 tolerated(0.11) probably_damaging(0.998) TCGA-EI-6917-01 18 77895987 77895987 G A ADNP2 Silent p.R897R 0.21 TCGA-EI-6917-01 18 7949346 7949346 A G PTPRM Silent p.V277V 0.24 TCGA-EI-6917-01 18 8371000 8371000 A G PTPRM Missense_Mutation p.E1056G 0.17 deleterious(0.01) possibly_damaging(0.882) TCGA-EI-6917-01 18 8720369 8720369 G A SOGA2 Missense_Mutation p.E78K 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 18 8831911 8831911 G T SOGA2 3'UTR 0.23 TCGA-EI-6917-01 18 9211672 9211672 G T ANKRD12 Missense_Mutation p.R181I 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 18 9256319 9256320 - A ANKRD12 Frame_Shift_Ins p.D1021Rfs*2 0.18 TCGA-EI-6917-01 18 9257427 9257427 C T ANKRD12 Missense_Mutation p.L1388F 0.21 tolerated_low_confidence(0.13) benign(0.001) TCGA-EI-6917-01 18 9887154 9887154 G T TXNDC2 Missense_Mutation p.K226N 0.32 tolerated(0.34) benign(0.382) TCGA-EI-6917-01 19 10089627 10089627 C T COL5A3 Silent p.G968G 0.22 TCGA-EI-6917-01 19 10267124 10267124 C T DNMT1 Missense_Mutation p.E448K 0.20 tolerated(0.18) benign(0.031) TCGA-EI-6917-01 19 1041863 1041863 G A ABCA7 Missense_Mutation p.G65D 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 19 10421591 10421591 G T FDX1L Nonsense_Mutation p.C111* 0.31 TCGA-EI-6917-01 19 10449511 10449511 C T ICAM3 Missense_Mutation p.A64T 0.31 tolerated(0.77) benign(0.002) TCGA-EI-6917-01 19 10663783 10663783 T G ATG4D 3'UTR 0.38 TCGA-EI-6917-01 19 10747408 10747408 G A SLC44A2 Missense_Mutation p.E523K 0.19 deleterious(0) probably_damaging(0.934) TCGA-EI-6917-01 19 10787889 10787889 G A ILF3 Silent p.A154A 0.33 TCGA-EI-6917-01 19 10795639 10795639 G A ILF3 Intron 0.32 TCGA-EI-6917-01 19 10980014 10980014 G A C19orf38 Missense_Mutation p.E222K 0.32 deleterious(0.01) possibly_damaging(0.81) TCGA-EI-6917-01 19 110995 110995 T C OR4F17 Missense_Mutation p.V106A 0.14 deleterious(0) benign(0.197) TCGA-EI-6917-01 19 11460656 11460656 G A CCDC159 Missense_Mutation p.R33Q 0.32 tolerated_low_confidence(0.1) benign(0.099) TCGA-EI-6917-01 19 11558386 11558386 G T PRKCSH Nonsense_Mutation p.E328* 0.31 TCGA-EI-6917-01 19 11569009 11569009 C T ELAVL3 Missense_Mutation p.A194T 0.28 tolerated(0.12) benign(0.046) TCGA-EI-6917-01 19 11660459 11660459 G A CNN1 Missense_Mutation p.G248D 0.18 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 19 11833609 11833609 G A ZNF823 Missense_Mutation p.A247V 0.31 deleterious(0) benign(0.244) TCGA-EI-6917-01 19 11917544 11917544 G A ZNF491 Missense_Mutation p.R259Q 0.17 tolerated(0.95) benign(0.011) TCGA-EI-6917-01 19 11942734 11942734 G T ZNF440 Missense_Mutation p.R248I 0.33 tolerated(0.14) probably_damaging(1) TCGA-EI-6917-01 19 11978669 11978669 G T ZNF439 Missense_Mutation p.R262I 0.26 tolerated(0.06) probably_damaging(0.963) TCGA-EI-6917-01 19 11979076 11979076 C T ZNF439 Nonsense_Mutation p.R398* 0.26 TCGA-EI-6917-01 19 12024361 12024361 G A ZNF69 3'UTR 0.22 TCGA-EI-6917-01 19 12059468 12059468 G A ZNF700 Missense_Mutation p.R210Q 0.27 tolerated(1) benign(0.019) TCGA-EI-6917-01 19 12090573 12090573 G A ZNF763 3'UTR 0.28 TCGA-EI-6917-01 19 12154972 12154972 C T ZNF878 Missense_Mutation p.R415Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 19 12186391 12186391 T C ZNF844 Silent p.C152C 0.22 TCGA-EI-6917-01 19 12186755 12186755 A T ZNF844 Missense_Mutation p.T274S 0.42 tolerated(0.18) benign(0.003) TCGA-EI-6917-01 19 12221168 12221168 T C ZNF788 Missense_Mutation p.W38R 0.22 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 19 12244345 12244345 C T ZNF20 Missense_Mutation p.R219Q 0.31 deleterious(0) possibly_damaging(0.617) TCGA-EI-6917-01 19 12244774 12244774 C A ZNF20 Missense_Mutation p.S76I 0.28 tolerated(0.17) benign(0.035) TCGA-EI-6917-01 19 12256085 12256085 C T ZNF625 3'UTR 0.17 TCGA-EI-6917-01 19 12256139 12256139 C T ZNF625 Silent p.S364S 0.21 TCGA-EI-6917-01 19 12256275 12256275 C T ZNF625 Missense_Mutation p.R319Q 0.28 tolerated(0.86) benign(0.002) TCGA-EI-6917-01 19 12256832 12256832 C T ZNF625 Silent p.K133K 0.21 TCGA-EI-6917-01 19 12298428 12298428 G T ZNF136 Missense_Mutation p.R412I 0.18 deleterious(0.05) benign(0.217) TCGA-EI-6917-01 19 12298584 12298584 G A ZNF136 Missense_Mutation p.R464Q 0.26 tolerated(0.95) probably_damaging(0.998) TCGA-EI-6917-01 19 1236028 1236028 C T C19orf26 Silent p.T24T 0.19 TCGA-EI-6917-01 19 12384807 12384807 C T ZNF44 Missense_Mutation p.R136Q 0.33 tolerated(0.14) benign(0.002) TCGA-EI-6917-01 19 12574925 12574925 C T ZNF709 Missense_Mutation p.R604Q 0.19 tolerated(0.74) benign(0) TCGA-EI-6917-01 19 12575430 12575430 G A ZNF709 Nonsense_Mutation p.R436* 0.31 TCGA-EI-6917-01 19 12576005 12576005 C A ZNF709 Missense_Mutation p.R244I 0.24 deleterious(0.05) probably_damaging(0.998) TCGA-EI-6917-01 19 12637432 12637432 C A ZNF564 Missense_Mutation p.R497I 0.22 deleterious(0.02) benign(0.301) TCGA-EI-6917-01 19 12691589 12691589 G A ZNF490 Nonsense_Mutation p.R434* 0.30 TCGA-EI-6917-01 19 12692176 12692176 C T ZNF490 Missense_Mutation p.R238Q 0.22 tolerated(0.72) benign(0.196) TCGA-EI-6917-01 19 12758141 12758141 G A MAN2B1 Silent p.F943F 0.18 TCGA-EI-6917-01 19 12779357 12779357 C T WDR83OS Silent p.T77T 0.16 TCGA-EI-6917-01 19 12979933 12979933 T C MAST1 Missense_Mutation p.S943P 0.32 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 19 13470495 13470495 G A CACNA1A Silent p.F301F 0.21 TCGA-EI-6917-01 19 13868605 13868605 C T CCDC130 Missense_Mutation p.R68C 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 19 13915859 13915859 C T ZSWIM4 Silent p.F203F 0.40 TCGA-EI-6917-01 19 14037873 14037873 C T CC2D1A Silent p.F736F 0.41 TCGA-EI-6917-01 19 1432655 1432655 G A DAZAP1 Silent p.P338P 0.16 TCGA-EI-6917-01 19 14675621 14675621 C T TECR Silent p.F171F 0.22 TCGA-EI-6917-01 19 14694006 14694006 G A CLEC17A Missense_Mutation p.D12N 0.26 tolerated_low_confidence(0.09) benign(0) TCGA-EI-6917-01 19 14736376 14736376 G A EMR3 Silent p.I616I 0.23 TCGA-EI-6917-01 19 14938582 14938582 G A OR7A5 Silent p.L158L 0.22 TCGA-EI-6917-01 19 1497701 1497701 G T REEP6 3'UTR 0.29 TCGA-EI-6917-01 19 15198063 15198063 C A OR1I1 Missense_Mutation p.L63I 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6917-01 19 15198279 15198279 C A OR1I1 Missense_Mutation p.L135I 0.34 tolerated(1) benign(0.014) TCGA-EI-6917-01 19 15271637 15271637 C T NOTCH3 Missense_Mutation p.E2268K 0.22 deleterious(0.03) benign(0.181) TCGA-EI-6917-01 19 15535023 15535023 G A WIZ Silent p.F732F 0.19 TCGA-EI-6917-01 19 15562742 15562742 C T RASAL3 Missense_Mutation p.R967H 0.37 deleterious(0) probably_damaging(0.98) TCGA-EI-6917-01 19 15905759 15905759 G A OR10H5 Missense_Mutation p.A301T 0.16 deleterious(0.02) benign(0.052) TCGA-EI-6917-01 19 16060247 16060247 C T OR10H4 Missense_Mutation p.H144Y 0.26 tolerated(0.41) benign(0.001) TCGA-EI-6917-01 19 16060663 16060663 C A OR10H4 Silent p.V282V 0.32 TCGA-EI-6917-01 19 16278981 16278981 C T CIB3 Missense_Mutation p.D105N 0.28 tolerated(0.07) probably_damaging(0.913) TCGA-EI-6917-01 19 16596001 16596001 G A CALR3 Silent p.H155H 0.25 TCGA-EI-6917-01 19 17758285 17758285 G A UNC13A Silent p.S611S 0.24 TCGA-EI-6917-01 19 17898629 17898629 C T FCHO1 Missense_Mutation p.S874L 0.34 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 19 1799935 1799935 C T ATP8B3 Intron 0.31 TCGA-EI-6917-01 19 18241378 18241378 T C MAST3 Missense_Mutation p.I404T 0.27 deleterious(0) benign(0.201) TCGA-EI-6917-01 19 18547793 18547793 G A ISYNA1 Silent p.L135L 0.30 TCGA-EI-6917-01 19 18980810 18980810 G A GDF1 Missense_Mutation p.R103C 0.31 deleterious(0) probably_damaging(0.965) TCGA-EI-6917-01 19 19735185 19735185 G A LPAR2 Silent p.C312C 0.24 TCGA-EI-6917-01 19 19735371 19735371 G A LPAR2 Silent p.F250F 0.22 TCGA-EI-6917-01 19 19789565 19789565 A C ZNF101 Missense_Mutation p.N54T 0.24 deleterious(0) benign(0.017) TCGA-EI-6917-01 19 19790943 19790943 G A ZNF101 Missense_Mutation p.R382Q 0.25 tolerated(0.49) benign(0.216) TCGA-EI-6917-01 19 19822134 19822134 G A ZNF14 3'UTR 0.25 TCGA-EI-6917-01 19 19822283 19822283 G A ZNF14 Nonsense_Mutation p.R603* 0.26 TCGA-EI-6917-01 19 19822367 19822367 G A ZNF14 Nonsense_Mutation p.R575* 0.17 TCGA-EI-6917-01 19 19822634 19822634 G A ZNF14 Missense_Mutation p.R486C 0.30 tolerated(0.2) benign(0.002) TCGA-EI-6917-01 19 1986408 1986408 G - BTBD2 3'UTR 0.23 TCGA-EI-6917-01 19 19905824 19905824 C T ZNF506 Missense_Mutation p.G291D 0.20 deleterious(0.03) benign(0.255) TCGA-EI-6917-01 19 19906415 19906415 G T ZNF506 Missense_Mutation p.S94Y 0.34 deleterious(0.03) benign(0.055) TCGA-EI-6917-01 19 20003711 20003711 T C ZNF253 3'UTR 0.26 TCGA-EI-6917-01 19 20044698 20044698 C T ZNF93 Missense_Mutation p.P312S 0.35 deleterious(0.04) benign(0.23) TCGA-EI-6917-01 19 20117633 20117633 C A ZNF682 Missense_Mutation p.E226D 0.29 tolerated(0.06) benign(0.03) TCGA-EI-6917-01 19 20117675 20117675 C A ZNF682 Missense_Mutation p.W212C 0.23 tolerated(0.27) benign(0.004) TCGA-EI-6917-01 19 20229109 20229109 G T ZNF90 Missense_Mutation p.R249I 0.16 tolerated(0.38) benign(0.03) TCGA-EI-6917-01 19 21241354 21241354 C T ZNF430 3'UTR 0.33 TCGA-EI-6917-01 19 21608747 21608747 G A ZNF493 3'UTR 0.20 TCGA-EI-6917-01 19 21610018 21610018 A G ZNF493 3'UTR 0.28 TCGA-EI-6917-01 19 21712490 21712490 G T ZNF429 Nonsense_Mutation p.E12* 0.16 TCGA-EI-6917-01 19 21990997 21990997 T G ZNF43 Missense_Mutation p.K614N 0.18 tolerated(0.05) benign(0.445) TCGA-EI-6917-01 19 22001895 22001895 A G ZNF43 Splice_Site p.X44_splice 0.28 TCGA-EI-6917-01 19 2210763 2210763 G A DOT1L Silent p.A420A 0.24 TCGA-EI-6917-01 19 22154305 22154305 G A ZNF208 Silent p.G1177G 0.23 TCGA-EI-6917-01 19 22585636 22585636 C A ZNF98 Nonsense_Mutation p.E70* 0.19 TCGA-EI-6917-01 19 22847005 22847005 T C ZNF492 Silent p.Y178Y 0.23 TCGA-EI-6917-01 19 22847413 22847413 T C ZNF492 Silent p.C314C 0.18 TCGA-EI-6917-01 19 2291352 2291352 G A LINGO3 Silent p.L142L 0.20 TCGA-EI-6917-01 19 22940896 22940896 G T ZNF99 Missense_Mutation p.F605L 0.26 tolerated(0.64) benign(0.228) TCGA-EI-6917-01 19 23328353 23328353 G A ZNF730 Silent p.S169S 0.29 TCGA-EI-6917-01 19 23406078 23406078 C T ZNF724P Silent p.S323S 0.33 TCGA-EI-6917-01 19 23406546 23406546 C A ZNF724P Missense_Mutation p.K167N 0.36 tolerated(0.21) possibly_damaging(0.775) TCGA-EI-6917-01 19 23543607 23543607 C T ZNF91 Missense_Mutation p.R725Q 0.19 tolerated(1) benign(0.092) TCGA-EI-6917-01 19 23543832 23543832 C A ZNF91 Missense_Mutation p.R650I 0.14 tolerated(0.23) benign(0.412) TCGA-EI-6917-01 19 24102246 24102246 G A ZNF726 Silent p.Q25Q 0.26 TCGA-EI-6917-01 19 2418101 2418101 G A TMPRSS9 Missense_Mutation p.A673T 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 19 24309341 24309341 A C ZNF254 Missense_Mutation p.K180T 0.21 deleterious(0) possibly_damaging(0.633) TCGA-EI-6917-01 19 24310667 24310667 G T ZNF254 Missense_Mutation p.R622I 0.22 tolerated(0.41) benign(0.001) TCGA-EI-6917-01 19 2736813 2736813 G A SLC39A3 Intron 0.38 TCGA-EI-6917-01 19 3005795 3005795 C T TLE2 Missense_Mutation p.D558N 0.12 deleterious(0.03) possibly_damaging(0.858) TCGA-EI-6917-01 19 3014603 3014603 C T TLE2 Missense_Mutation p.E230K 0.48 tolerated(0.07) benign(0.215) TCGA-EI-6917-01 19 30496606 30496606 G A URI1 Missense_Mutation p.E170K 0.23 tolerated(0.13) benign(0.019) TCGA-EI-6917-01 19 30934918 30934918 G A ZNF536 Missense_Mutation p.R150H 0.13 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 19 30935675 30935675 G T ZNF536 Missense_Mutation p.K402N 0.35 deleterious(0) possibly_damaging(0.511) TCGA-EI-6917-01 19 31768209 31768209 G A TSHZ3 Silent p.V830V 0.32 TCGA-EI-6917-01 19 32959676 32959676 G T DPY19L3 Nonsense_Mutation p.E552* 0.31 TCGA-EI-6917-01 19 33350757 33350757 G A SLC7A9 Missense_Mutation p.A288V 0.41 deleterious(0.01) probably_damaging(0.937) TCGA-EI-6917-01 19 33390846 33390846 C T CEP89 Missense_Mutation p.E598K 0.23 deleterious(0) possibly_damaging(0.781) TCGA-EI-6917-01 19 33467646 33467646 T G C19orf40 3'UTR 0.29 TCGA-EI-6917-01 19 33703500 33703500 C T SLC7A10 Missense_Mutation p.R185H 0.29 deleterious(0.01) probably_damaging(0.981) TCGA-EI-6917-01 19 33871435 33871435 G A CEBPG 3'UTR 0.36 TCGA-EI-6917-01 19 33871723 33871723 C A CEBPG 3'UTR 0.30 TCGA-EI-6917-01 19 34303827 34303827 C T KCTD15 Nonsense_Mutation p.R276* 0.23 TCGA-EI-6917-01 19 34959978 34959978 C T UBA2 Missense_Mutation p.S592L 0.18 tolerated(0.05) benign(0.004) TCGA-EI-6917-01 19 35232476 35232476 G T ZNF181 Missense_Mutation p.R397I 0.18 deleterious(0) benign(0.371) TCGA-EI-6917-01 19 35616111 35616111 C A LGI4 Missense_Mutation p.D534Y 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 19 35633383 35633383 G A FXYD1 Missense_Mutation p.E72K 0.19 tolerated(0.2) benign(0.217) TCGA-EI-6917-01 19 35719463 35719463 G T FAM187B Missense_Mutation p.L41I 0.18 tolerated(0.53) benign(0.077) TCGA-EI-6917-01 19 35979568 35979568 C T KRTDAP Missense_Mutation p.R55Q 0.19 tolerated(0.14) benign(0.386) TCGA-EI-6917-01 19 36004048 36004048 C T DMKN Silent p.G110G 0.17 TCGA-EI-6917-01 19 36045964 36045964 C T ATP4A Missense_Mutation p.D781N 0.24 deleterious(0.01) benign(0.289) TCGA-EI-6917-01 19 36046418 36046418 C T ATP4A Missense_Mutation p.R694H 0.22 tolerated(0.09) possibly_damaging(0.744) TCGA-EI-6917-01 19 36229503 36229503 C T KMT2B 3'UTR 0.17 TCGA-EI-6917-01 19 36243815 36243815 G A LIN37 Silent p.R64R 0.29 TCGA-EI-6917-01 19 36273380 36273380 G A ARHGAP33 Silent p.P397P 0.25 TCGA-EI-6917-01 19 36317520 36317520 C A NPHS1 Missense_Mutation p.D1208Y 0.35 tolerated(0.06) benign(0.005) TCGA-EI-6917-01 19 36340027 36340027 G A NPHS1 Missense_Mutation p.A288V 0.47 tolerated(0.17) benign(0.009) TCGA-EI-6917-01 19 36352460 36352460 G A KIRREL2 Missense_Mutation p.A403T 0.15 tolerated(0.06) benign(0.019) TCGA-EI-6917-01 19 36518046 36518046 G T CLIP3 Silent p.V98V 0.20 TCGA-EI-6917-01 19 36526300 36526300 C T THAP8 3'UTR 0.25 TCGA-EI-6917-01 19 36574128 36574128 G A WDR62 Missense_Mutation p.R512Q 0.27 deleterious(0.01) possibly_damaging(0.723) TCGA-EI-6917-01 19 36673575 36673575 A T ZNF565 Silent p.V431V 0.17 TCGA-EI-6917-01 19 36831728 36831728 G T ZFP14 Missense_Mutation p.H334N 0.31 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 19 36832181 36832181 G A ZFP14 Missense_Mutation p.R183C 0.25 tolerated(0.2) possibly_damaging(0.86) TCGA-EI-6917-01 19 37037884 37037884 G A ZNF529 Missense_Mutation p.R526C 0.30 deleterious(0) possibly_damaging(0.722) TCGA-EI-6917-01 19 37130800 37130800 A G ZNF461 Silent p.C149C 0.15 TCGA-EI-6917-01 19 37211515 37211515 G T ZNF567 Missense_Mutation p.R599I 0.19 deleterious(0) benign(0.157) TCGA-EI-6917-01 19 37211517 37211517 A C ZNF567 Missense_Mutation p.N600H 0.20 tolerated(0.51) benign(0.005) TCGA-EI-6917-01 19 37367977 37367977 G A ZNF345 Missense_Mutation p.R82Q 0.21 deleterious(0.04) benign(0.055) TCGA-EI-6917-01 19 37368220 37368220 G A ZNF345 Missense_Mutation p.R163Q 0.28 tolerated(1) benign(0.011) TCGA-EI-6917-01 19 37368649 37368649 G T ZNF345 Missense_Mutation p.R306I 0.24 deleterious(0.04) probably_damaging(0.986) TCGA-EI-6917-01 19 37370458 37370458 T G ZNF345 3'UTR 0.31 TCGA-EI-6917-01 19 37399326 37399326 G T ZNF829 Missense_Mutation p.F125L 0.21 tolerated(0.11) probably_damaging(0.916) TCGA-EI-6917-01 19 3779720 3779720 A C MATK Missense_Mutation p.F274C 0.16 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 19 37865082 37865082 G T ZNF527 5'UTR 0.26 TCGA-EI-6917-01 19 37966847 37966847 C A ZNF570 Missense_Mutation p.S33Y 0.29 deleterious(0.03) possibly_damaging(0.812) TCGA-EI-6917-01 19 37975405 37975405 G A ZNF570 Missense_Mutation p.R294Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 19 38027811 38027811 G A ZNF793 Missense_Mutation p.R84Q 0.29 tolerated(0.77) benign(0) TCGA-EI-6917-01 19 38077418 38077418 C T ZNF571 Intron 0.17 TCGA-EI-6917-01 19 38161110 38161110 C T ZNF781 5'UTR 0.23 TCGA-EI-6917-01 19 38161239 38161239 C T ZNF781 5'UTR 0.26 TCGA-EI-6917-01 19 38188936 38188936 C A ZNF607 3'UTR 0.32 TCGA-EI-6917-01 19 38189537 38189537 G A ZNF607 Missense_Mutation p.H499Y 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 19 38375958 38375958 C A WDR87 Missense_Mutation p.D2746Y 0.30 unknown(0) TCGA-EI-6917-01 19 38378529 38378529 C T WDR87 Missense_Mutation p.A1889T 0.20 benign(0.23) TCGA-EI-6917-01 19 38378848 38378848 C A WDR87 Missense_Mutation p.E1782D 0.34 benign(0.005) TCGA-EI-6917-01 19 38380027 38380027 C A WDR87 Missense_Mutation p.K1389N 0.23 possibly_damaging(0.82) TCGA-EI-6917-01 19 38386928 38386928 C A WDR87 Missense_Mutation p.K32N 0.20 benign(0.053) TCGA-EI-6917-01 19 38706885 38706885 C T DPF1 Missense_Mutation p.D292N 0.52 tolerated(0.15) probably_damaging(0.918) TCGA-EI-6917-01 19 3885829 3885829 G A ATCAY Missense_Mutation p.E22K 0.19 deleterious(0.01) possibly_damaging(0.738) TCGA-EI-6917-01 19 38881059 38881059 C T SPRED3 Silent p.P39P 0.33 TCGA-EI-6917-01 19 38976466 38976466 G A RYR1 Missense_Mutation p.R1724H 0.30 probably_damaging(0.976) TCGA-EI-6917-01 19 38981276 38981276 C A RYR1 Missense_Mutation p.Q2011K 0.18 benign(0.008) TCGA-EI-6917-01 19 39591984 39591984 T C PAPL Missense_Mutation p.Y344H 0.33 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 19 3961014 3961014 C A DAPK3 Missense_Mutation p.D259Y 0.30 deleterious(0) possibly_damaging(0.895) TCGA-EI-6917-01 19 39788718 39788718 C T IFNL1 Missense_Mutation p.H122Y 0.24 tolerated(0.14) benign(0.008) TCGA-EI-6917-01 19 39804841 39804841 G A LRFN1 Missense_Mutation p.A379V 0.45 deleterious(0) possibly_damaging(0.802) TCGA-EI-6917-01 19 39998523 39998523 T C DLL3 Missense_Mutation p.V576A 0.17 deleterious(0.03) benign(0.108) TCGA-EI-6917-01 19 40319090 40319090 C T DYRK1B Silent p.A218A 0.30 TCGA-EI-6917-01 19 40419606 40419606 C A FCGBP Nonsense_Mutation p.E1130* 0.25 TCGA-EI-6917-01 19 40520006 40520006 G A ZNF546 Missense_Mutation p.E277K 0.29 tolerated(0.05) benign(0.393) TCGA-EI-6917-01 19 40520193 40520193 G A ZNF546 Missense_Mutation p.R339K 0.31 tolerated(0.7) benign(0.22) TCGA-EI-6917-01 19 40580930 40580930 A G ZNF780A Silent p.F474F 0.34 TCGA-EI-6917-01 19 40581405 40581405 C T ZNF780A Missense_Mutation p.R316Q 0.27 tolerated(0.42) possibly_damaging(0.768) TCGA-EI-6917-01 19 40828023 40828023 C T C19orf47 Silent p.E345E 0.29 TCGA-EI-6917-01 19 40964319 40964319 G A BLVRB Silent p.V71V 0.26 TCGA-EI-6917-01 19 41081419 41081419 G T SPTBN4 Nonsense_Mutation p.E2547* 0.25 TCGA-EI-6917-01 19 41174021 41174021 G T NUMBL Silent p.P394P 0.29 TCGA-EI-6917-01 19 4157019 4157019 G A CREB3L3 Missense_Mutation p.D62N 0.20 deleterious(0.01) benign(0.008) TCGA-EI-6917-01 19 42125612 42125612 C T CEACAM4 3'UTR 0.53 TCGA-EI-6917-01 19 42343424 42343424 G T LYPD4 5'UTR 0.29 TCGA-EI-6917-01 19 42485962 42485962 G A ATP1A3 Missense_Mutation p.S418L 0.34 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6917-01 19 42492666 42492666 G A ATP1A3 Missense_Mutation p.R32C 0.17 deleterious(0) benign(0.083) TCGA-EI-6917-01 19 42729237 42729237 C T ZNF526 Missense_Mutation p.R228C 0.28 tolerated(0.1) benign(0.001) TCGA-EI-6917-01 19 42793207 42793207 G T CIC Nonsense_Mutation p.E367* 0.41 TCGA-EI-6917-01 19 42821063 42821063 A G TMEM145 Missense_Mutation p.Y283C 0.21 tolerated(0.07) benign(0.016) TCGA-EI-6917-01 19 42824508 42824508 C T TMEM145 Silent p.F371F 0.20 TCGA-EI-6917-01 19 42879662 42879662 G A MEGF8 Missense_Mutation p.A2358T 0.26 deleterious(0.01) possibly_damaging(0.83) TCGA-EI-6917-01 19 42893090 42893090 C T CNFN Missense_Mutation p.D34N 0.23 deleterious(0.01) probably_damaging(0.954) TCGA-EI-6917-01 19 42910525 42910525 C T LIPE Missense_Mutation p.R718Q 0.29 deleterious(0.04) benign(0.2) TCGA-EI-6917-01 19 4311859 4311859 G A FSD1 Missense_Mutation p.D171N 0.14 tolerated(0.16) benign(0.004) TCGA-EI-6917-01 19 43259278 43259278 G A PSG8 Missense_Mutation p.P284S 0.21 tolerated(0.09) possibly_damaging(0.854) TCGA-EI-6917-01 19 43372091 43372091 C T PSG1 3'UTR 0.23 TCGA-EI-6917-01 19 43375970 43375970 G A PSG1 Missense_Mutation p.R220W 0.19 tolerated(0.18) benign(0.011) TCGA-EI-6917-01 19 43420484 43420484 C T PSG6 Missense_Mutation p.D74N 0.29 deleterious(0.03) possibly_damaging(0.482) TCGA-EI-6917-01 19 43433593 43433593 C T PSG7 Splice_Site p.X237_splice 0.29 TCGA-EI-6917-01 19 43575871 43575871 C T PSG2 Silent p.S315S 0.27 TCGA-EI-6917-01 19 43679419 43679419 A G PSG5 Silent p.R304R 0.22 TCGA-EI-6917-01 19 43772266 43772266 C T PSG9 Missense_Mutation p.A34T 0.28 deleterious(0) probably_damaging(0.974) TCGA-EI-6917-01 19 43866333 43866333 C T CD177 3'UTR 0.13 TCGA-EI-6917-01 19 44117856 44117856 G A SRRM5 Missense_Mutation p.S528N 0.20 deleterious(0.05) benign(0.007) TCGA-EI-6917-01 19 44352809 44352809 G T ZNF283 3'UTR 0.19 TCGA-EI-6917-01 19 4453935 4453935 C T UBXN6 Missense_Mutation p.R80Q 0.31 tolerated(0.44) benign(0.284) TCGA-EI-6917-01 19 44590567 44590567 G T ZNF284 Missense_Mutation p.E312D 0.19 deleterious(0) possibly_damaging(0.901) TCGA-EI-6917-01 19 44591309 44591309 G A ZNF284 Missense_Mutation p.D560N 0.33 deleterious(0) benign(0.253) TCGA-EI-6917-01 19 44662009 44662009 C A ZNF234 Missense_Mutation p.H614N 0.32 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 19 44778459 44778459 C T ZNF233 Missense_Mutation p.S549L 0.32 deleterious(0.01) possibly_damaging(0.801) TCGA-EI-6917-01 19 44892134 44892134 G A ZNF285 Silent p.I91I 0.25 TCGA-EI-6917-01 19 44981019 44981019 C T ZNF180 Missense_Mutation p.R560H 0.10 tolerated(0.13) probably_damaging(0.994) TCGA-EI-6917-01 19 4513333 4513333 C A PLIN4 Silent p.V199V 0.28 TCGA-EI-6917-01 19 45790785 45790785 C T MARK4 Missense_Mutation p.P453S 0.22 tolerated(0.24) benign(0.334) TCGA-EI-6917-01 19 45815077 45815077 C T CKM Missense_Mutation p.D195N 0.28 deleterious(0.04) benign(0.231) TCGA-EI-6917-01 19 45996601 45996601 A C RTN2 Missense_Mutation p.L284V 0.22 tolerated_low_confidence(0.55) benign(0.007) TCGA-EI-6917-01 19 46181446 46181446 G A GIPR Missense_Mutation p.A372T 0.24 tolerated(0.41) benign(0.021) TCGA-EI-6917-01 19 46887100 46887100 G A PPP5C Missense_Mutation p.E255K 0.18 tolerated(0.4) benign(0.017) TCGA-EI-6917-01 19 46890450 46890450 C T PPP5C Silent p.F335F 0.26 TCGA-EI-6917-01 19 46973596 46973596 G A PNMAL1 Missense_Mutation p.R233C 0.25 tolerated(0.09) possibly_damaging(0.835) TCGA-EI-6917-01 19 47422919 47422919 G T ARHGAP35 Missense_Mutation p.K329N 0.22 deleterious(0) probably_damaging(0.936) TCGA-EI-6917-01 19 47423034 47423034 A C ARHGAP35 Missense_Mutation p.K368Q 0.35 tolerated(0.47) benign(0.01) TCGA-EI-6917-01 19 47572583 47572583 C T ZC3H4 Missense_Mutation p.E722K 0.31 unknown(0) TCGA-EI-6917-01 19 47969480 47969480 C T SLC8A2 Missense_Mutation p.D61N 0.41 tolerated(0.36) benign(0.003) TCGA-EI-6917-01 19 48047744 48047744 C T ZNF541 Missense_Mutation p.R681Q 0.25 deleterious(0.04) probably_damaging(0.992) TCGA-EI-6917-01 19 48058989 48058989 C T ZNF541 Missense_Mutation p.R42Q 0.26 tolerated(0.08) benign(0.048) TCGA-EI-6917-01 19 48258100 48258100 G A GLTSCR2 Silent p.E335E 0.21 TCGA-EI-6917-01 19 48305797 48305797 A C TPRX1 Missense_Mutation p.I157M 0.24 tolerated(0.14) unknown(0) TCGA-EI-6917-01 19 48598788 48598788 G A PLA2G4C Silent p.F224F 0.29 TCGA-EI-6917-01 19 48621032 48621032 C T LIG1 Missense_Mutation p.V816M 0.25 deleterious(0) possibly_damaging(0.637) TCGA-EI-6917-01 19 49013730 49013730 C T LMTK3 Missense_Mutation p.D95N 0.20 benign(0.245) TCGA-EI-6917-01 19 49218162 49218162 C A MAMSTR Missense_Mutation p.M143I 0.30 tolerated(0.07) benign(0.019) TCGA-EI-6917-01 19 49228061 49228061 C T RASIP1 Missense_Mutation p.E762K 0.24 tolerated(0.19) possibly_damaging(0.714) TCGA-EI-6917-01 19 4929354 4929354 G A MIR4747 5'Flank 0.33 TCGA-EI-6917-01 19 49303288 49303288 C T BCAT2 Missense_Mutation p.D161N 0.26 tolerated(0.53) benign(0.001) TCGA-EI-6917-01 19 49309838 49309838 C T BCAT2 Missense_Mutation p.R79Q 0.15 tolerated(0.47) benign(0.001) TCGA-EI-6917-01 19 49539431 49539431 C T CGB1 Missense_Mutation p.V47I 0.28 tolerated(0.38) possibly_damaging(0.57) TCGA-EI-6917-01 19 49814229 49814229 G T SLC6A16 Missense_Mutation p.L126I 0.44 tolerated(0.58) benign(0.196) TCGA-EI-6917-01 19 49933892 49933892 C T SLC17A7 Missense_Mutation p.E523K 0.28 tolerated(0.1) benign(0.017) TCGA-EI-6917-01 19 49950301 49950301 C T PIH1D1 Missense_Mutation p.E223K 0.14 deleterious(0.05) possibly_damaging(0.804) TCGA-EI-6917-01 19 49979037 49979037 C T FLT3LG Silent p.F41F 0.36 TCGA-EI-6917-01 19 50155786 50155786 G A SCAF1 Missense_Mutation p.D714N 0.33 unknown(0) TCGA-EI-6917-01 19 50165575 50165575 G A IRF3 Silent p.F204F 0.25 TCGA-EI-6917-01 19 50547943 50547943 G T ZNF473 Missense_Mutation p.K81N 0.23 deleterious(0.01) benign(0.005) TCGA-EI-6917-01 19 50838360 50838360 G A NAPSB RNA 0.22 TCGA-EI-6917-01 19 50865288 50865288 T C NAPSA Missense_Mutation p.D96G 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 19 50920439 50920439 T C POLD1 Missense_Mutation p.L1044P 0.31 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6917-01 19 50926139 50926139 G A SPIB Missense_Mutation p.D62N 0.36 tolerated(0.25) benign(0.005) TCGA-EI-6917-01 19 50958833 50958833 G A MYBPC2 Nonsense_Mutation p.W757* 0.25 TCGA-EI-6917-01 19 50958843 50958843 G A MYBPC2 Silent p.P760P 0.29 TCGA-EI-6917-01 19 51021224 51021224 G A LRRC4B Silent p.F582F 0.17 TCGA-EI-6917-01 19 51165265 51165265 C T SHANK1 Missense_Mutation p.R2148H 0.10 unknown(0) TCGA-EI-6917-01 19 51165666 51165666 C T SHANK1 Silent p.A2014A 0.37 TCGA-EI-6917-01 19 51170539 51170539 C T SHANK1 Missense_Mutation p.E1560K 0.44 unknown(0) TCGA-EI-6917-01 19 51483119 51483119 C T KLK7 Silent p.T177T 0.21 TCGA-EI-6917-01 19 51656400 51656400 G T SIGLEC7 Missense_Mutation p.E434D 0.27 deleterious(0.04) benign(0.444) TCGA-EI-6917-01 19 51729260 51729260 G A CD33 Missense_Mutation p.G207D 0.30 deleterious(0.03) probably_damaging(0.975) TCGA-EI-6917-01 19 51835844 51835844 G A VSIG10L 3'UTR 0.22 TCGA-EI-6917-01 19 51883763 51883763 G A LIM2 Silent p.F194F 0.30 TCGA-EI-6917-01 19 51918673 51918673 G A SIGLEC10 Silent p.N364N 0.21 TCGA-EI-6917-01 19 51961269 51961269 G A SIGLEC8 Missense_Mutation p.R125W 0.13 deleterious(0.03) probably_damaging(0.996) TCGA-EI-6917-01 19 52091068 52091068 G A ZNF175 Missense_Mutation p.R495Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 19 52091236 52091236 G A ZNF175 Missense_Mutation p.R551K 0.15 tolerated(0.73) probably_damaging(0.948) TCGA-EI-6917-01 19 5218429 5218429 A G PTPRS Splice_Site p.X1350_splice 0.29 TCGA-EI-6917-01 19 52273603 52273603 T C FPR2 3'UTR 0.28 TCGA-EI-6917-01 19 52327902 52327902 C A FPR3 Missense_Mutation p.L301I 0.19 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 19 52394460 52394460 C T ZNF649 Missense_Mutation p.R310Q 0.22 deleterious(0.01) possibly_damaging(0.587) TCGA-EI-6917-01 19 52468609 52468609 C A ZNF350 Missense_Mutation p.R366I 0.30 deleterious(0) probably_damaging(0.972) TCGA-EI-6917-01 19 52496176 52496176 G A ZNF615 Missense_Mutation p.A729V 0.24 tolerated(0.63) probably_damaging(0.937) TCGA-EI-6917-01 19 52496382 52496382 C A ZNF615 Missense_Mutation p.K660N 0.27 tolerated(0.06) benign(0.396) TCGA-EI-6917-01 19 52519595 52519595 C T ZNF614 Missense_Mutation p.R419Q 0.26 deleterious(0.04) probably_damaging(0.994) TCGA-EI-6917-01 19 52550195 52550195 C A ZNF432 5'UTR 0.25 TCGA-EI-6917-01 19 52569899 52569899 C T ZNF841 Silent p.R412R 0.18 TCGA-EI-6917-01 19 52618711 52618711 C A ZNF616 Missense_Mutation p.R569I 0.33 tolerated(0.07) benign(0.248) TCGA-EI-6917-01 19 52618715 52618715 G A ZNF616 Missense_Mutation p.R568W 0.27 tolerated(0.06) benign(0.009) TCGA-EI-6917-01 19 52659012 52659012 C T ZNF836 Missense_Mutation p.E642K 0.24 tolerated(0.15) benign(0.23) TCGA-EI-6917-01 19 52887344 52887344 C T ZNF880 Missense_Mutation p.L171F 0.23 tolerated(0.11) benign(0.18) TCGA-EI-6917-01 19 52918684 52918684 A C ZNF528 Missense_Mutation p.Q193H 0.23 deleterious(0) benign(0.332) TCGA-EI-6917-01 19 52919709 52919709 A G ZNF528 Missense_Mutation p.Y535C 0.22 tolerated(0.23) benign(0.011) TCGA-EI-6917-01 19 52919846 52919846 G T ZNF528 Nonsense_Mutation p.E581* 0.41 TCGA-EI-6917-01 19 52941189 52941189 T C ZNF534 Missense_Mutation p.I172T 0.23 deleterious(0.04) benign(0.072) TCGA-EI-6917-01 19 53014435 53014435 C A ZNF578 Silent p.V267V 0.19 TCGA-EI-6917-01 19 53208955 53208955 C A ZNF611 Missense_Mutation p.E451D 0.28 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 19 53268936 53268936 C A ZNF600 Missense_Mutation p.E691D 0.22 deleterious(0.03) benign(0.018) TCGA-EI-6917-01 19 53301625 53301625 T C ZNF28 3'UTR 0.33 TCGA-EI-6917-01 19 53303448 53303448 C T ZNF28 Silent p.P550P 0.22 TCGA-EI-6917-01 19 53432198 53432198 T G ZNF321P Missense_Mutation p.Q220H 0.30 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 19 53572065 53572065 G A ZNF160 Silent p.F574F 0.19 TCGA-EI-6917-01 19 53572898 53572898 G A ZNF160 Missense_Mutation p.R297C 0.20 tolerated(0.07) benign(0.234) TCGA-EI-6917-01 19 53643881 53643881 T G ZNF347 Missense_Mutation p.K735Q 0.22 deleterious(0.01) benign(0.016) TCGA-EI-6917-01 19 53644991 53644991 G A ZNF347 Nonsense_Mutation p.R365* 0.38 TCGA-EI-6917-01 19 53667725 53667725 C T ZNF665 Missense_Mutation p.R673Q 0.46 tolerated(1) benign(0.047) TCGA-EI-6917-01 19 53668968 53668968 C A ZNF665 Nonsense_Mutation p.E259* 0.31 TCGA-EI-6917-01 19 53741153 53741153 G A ZNF677 Missense_Mutation p.S276L 0.35 tolerated(0.06) benign(0.008) TCGA-EI-6917-01 19 53747115 53747115 G T ZNF677 Missense_Mutation p.F17L 0.19 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 19 53770831 53770831 G A VN1R4 Missense_Mutation p.L30F 0.20 tolerated(0.09) benign(0.16) TCGA-EI-6917-01 19 53770843 53770843 G T VN1R4 Missense_Mutation p.L26I 0.22 deleterious(0.02) possibly_damaging(0.657) TCGA-EI-6917-01 19 53793644 53793644 G A BIRC8 5'UTR 0.31 TCGA-EI-6917-01 19 53794815 53794815 T G BIRC8 5'UTR 0.26 TCGA-EI-6917-01 19 53960191 53960191 C T ZNF761 RNA 0.21 TCGA-EI-6917-01 19 54194211 54194211 C T MIR520A RNA 0.24 TCGA-EI-6917-01 19 54197708 54197708 C A MIR526B RNA 0.27 TCGA-EI-6917-01 19 54201668 54201668 G A MIR523 RNA 0.11 TCGA-EI-6917-01 19 54206018 54206018 G A MIR518B RNA 0.29 TCGA-EI-6917-01 19 54254542 54254542 C T MIR522 RNA 0.26 TCGA-EI-6917-01 19 54261542 54261542 C T MIR1283-2 RNA 0.25 TCGA-EI-6917-01 19 54264453 54264453 C A MIR516A2 RNA 0.29 TCGA-EI-6917-01 19 54301570 54301570 C T NLRP12 Missense_Mutation p.D952N 0.30 tolerated(0.27) benign(0.067) TCGA-EI-6917-01 19 54313231 54313231 C T NLRP12 Missense_Mutation p.R561H 0.27 tolerated(0.09) benign(0.09) TCGA-EI-6917-01 19 54378260 54378260 C A MYADM 3'UTR 0.26 TCGA-EI-6917-01 19 54379262 54379262 G A MYADM 3'UTR 0.19 TCGA-EI-6917-01 19 54379618 54379618 C T MYADM 3'UTR 0.27 TCGA-EI-6917-01 19 54395854 54395854 T C PRKCG Missense_Mutation p.S260P 0.22 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 19 5456043 5456043 G A ZNRF4 Missense_Mutation p.E181K 0.31 tolerated(0.9) benign(0.004) TCGA-EI-6917-01 19 54567060 54567060 C T VSTM1 5'UTR 0.22 TCGA-EI-6917-01 19 54617827 54617827 C T TFPT Missense_Mutation p.E93K 0.33 deleterious(0.04) benign(0.019) TCGA-EI-6917-01 19 54723015 54723015 C A LILRB3 Missense_Mutation p.S470I 0.19 deleterious(0.05) benign(0.441) TCGA-EI-6917-01 19 54756232 54756232 G T LILRB5 Missense_Mutation p.L525I 0.27 tolerated(0.07) possibly_damaging(0.596) TCGA-EI-6917-01 19 54782829 54782829 G A LILRB2 Missense_Mutation p.R265C 0.35 tolerated(0.1) possibly_damaging(0.735) TCGA-EI-6917-01 19 54802165 54802165 G A LILRA3 Silent p.N341N 0.17 TCGA-EI-6917-01 19 54803966 54803966 T C LILRA3 Missense_Mutation p.D16G 0.21 tolerated(1) benign(0) TCGA-EI-6917-01 19 54844702 54844702 A C LILRA4 3'UTR 0.62 TCGA-EI-6917-01 19 54946840 54946840 G A TTYH1 Missense_Mutation p.R415Q 0.18 tolerated(0.15) benign(0.08) TCGA-EI-6917-01 19 54973197 54973197 C T LENG8 3'UTR 0.38 TCGA-EI-6917-01 19 55046908 55046908 T C KIR3DX1 Silent p.F151F 0.25 TCGA-EI-6917-01 19 55105692 55105692 G A LILRA1 5'UTR 0.35 TCGA-EI-6917-01 19 55106342 55106342 C T LILRA1 Missense_Mutation p.R95W 0.22 deleterious(0.02) benign(0.264) TCGA-EI-6917-01 19 55106687 55106687 G A LILRA1 Missense_Mutation p.E161K 0.16 tolerated(0.1) possibly_damaging(0.491) TCGA-EI-6917-01 19 55146738 55146738 G T LILRB1 Nonsense_Mutation p.E531* 0.24 TCGA-EI-6917-01 19 55282305 55282305 C A KIR2DL1 Missense_Mutation p.F13L 0.33 tolerated(0.09) benign(0.002) TCGA-EI-6917-01 19 55316331 55316331 C T KIR2DL4 Missense_Mutation p.R54C 0.55 deleterious(0.02) benign(0.015) TCGA-EI-6917-01 19 55435185 55435185 C T NLRP7 Missense_Mutation p.E1013K 0.22 tolerated(0.07) benign(0.025) TCGA-EI-6917-01 19 55450294 55450294 C T NLRP7 Silent p.E631E 0.23 TCGA-EI-6917-01 19 55450945 55450945 C T NLRP7 Silent p.T414T 0.33 TCGA-EI-6917-01 19 55672474 55672474 C T DNAAF3 Missense_Mutation p.D359N 0.36 tolerated(0.15) probably_damaging(0.962) TCGA-EI-6917-01 19 55711817 55711817 C T PTPRH Missense_Mutation p.A403T 0.25 benign(0.044) TCGA-EI-6917-01 19 55739712 55739712 C T TMEM86B Missense_Mutation p.A49T 0.32 deleterious(0.02) benign(0.265) TCGA-EI-6917-01 19 55872256 55872256 C T FAM71E2 Missense_Mutation p.R259H 0.21 tolerated(0.56) benign(0) TCGA-EI-6917-01 19 55899632 55899632 G A RPL28 Intron 0.23 TCGA-EI-6917-01 19 5594165 5594165 C T SAFB2 Silent p.E648E 0.75 TCGA-EI-6917-01 19 56005989 56005989 G A SSC5D Missense_Mutation p.G409D 0.28 possibly_damaging(0.798) TCGA-EI-6917-01 19 56011644 56011644 G T SSC5D Nonsense_Mutation p.E723* 0.15 TCGA-EI-6917-01 19 56235489 56235489 T C NLRP9 Silent p.G672G 0.23 TCGA-EI-6917-01 19 56307589 56307589 G A NLRP11 Silent p.S733S 0.40 TCGA-EI-6917-01 19 56320310 56320310 C A NLRP11 Nonsense_Mutation p.E556* 0.27 TCGA-EI-6917-01 19 56321612 56321612 G A NLRP11 Missense_Mutation p.R122C 0.19 tolerated(0.1) benign(0) TCGA-EI-6917-01 19 56423388 56423388 C A NLRP13 Nonsense_Mutation p.E599* 0.16 TCGA-EI-6917-01 19 56424133 56424133 C A NLRP13 Missense_Mutation p.K350N 0.26 deleterious(0) probably_damaging(0.961) TCGA-EI-6917-01 19 56482062 56482062 C T NLRP8 Missense_Mutation p.S845L 0.29 tolerated(0.08) benign(0.001) TCGA-EI-6917-01 19 56538328 56538328 C T NLRP5 Silent p.F243F 0.14 TCGA-EI-6917-01 19 56539408 56539408 C T NLRP5 Silent p.I603I 0.26 TCGA-EI-6917-01 19 56733273 56733273 G T ZSCAN5A Missense_Mutation p.L388I 0.30 tolerated(0.55) benign(0.214) TCGA-EI-6917-01 19 57036365 57036365 G T ZNF471 Missense_Mutation p.R310I 0.23 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 19 57036956 57036956 G T ZNF471 Missense_Mutation p.R507I 0.29 deleterious(0.02) probably_damaging(0.998) TCGA-EI-6917-01 19 57037292 57037292 G T ZNF471 Missense_Mutation p.R619I 0.25 deleterious(0.02) probably_damaging(0.964) TCGA-EI-6917-01 19 57088370 57088370 G T ZNF470 Missense_Mutation p.Q191H 0.24 tolerated(0.11) benign(0.003) TCGA-EI-6917-01 19 57088540 57088540 G T ZNF470 Missense_Mutation p.R248I 0.32 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 19 57089887 57089887 G A ZNF470 Missense_Mutation p.R697Q 0.28 tolerated(0.1) benign(0.001) TCGA-EI-6917-01 19 57286283 57286283 G A ZIM2 Missense_Mutation p.R453C 0.26 deleterious(0.01) possibly_damaging(0.899) TCGA-EI-6917-01 19 57326262 57326262 C A PEG3 Missense_Mutation p.R1183I 0.18 deleterious(0.03) possibly_damaging(0.808) TCGA-EI-6917-01 19 57328239 57328239 C T PEG3 Missense_Mutation p.R524Q 0.17 tolerated(0.34) benign(0.324) TCGA-EI-6917-01 19 57328469 57328469 A T PEG3 Missense_Mutation p.F447L 0.17 tolerated(0.4) benign(0.01) TCGA-EI-6917-01 19 5733964 5733964 C A CATSPERD Missense_Mutation p.S125Y 0.23 tolerated(1) benign(0.04) TCGA-EI-6917-01 19 57723830 57723830 C T ZNF264 Silent p.F455F 0.30 TCGA-EI-6917-01 19 57724021 57724021 C T ZNF264 Missense_Mutation p.S519L 0.22 deleterious(0.01) benign(0.391) TCGA-EI-6917-01 19 57724221 57724221 C T ZNF264 Nonsense_Mutation p.R586* 0.50 TCGA-EI-6917-01 19 57743157 57743157 T C AURKC Splice_Site p.X35_splice 0.34 TCGA-EI-6917-01 19 57743941 57743941 T G AURKC Missense_Mutation p.F110V 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 19 5776305 5776305 C T CATSPERD Missense_Mutation p.S692L 0.27 deleterious(0.02) possibly_damaging(0.885) TCGA-EI-6917-01 19 57803422 57803422 G A ZNF460 Missense_Mutation p.E505K 0.17 tolerated(0.15) benign(0.018) TCGA-EI-6917-01 19 57840258 57840258 G T ZNF543 Missense_Mutation p.E476D 0.31 deleterious(0.03) benign(0.262) TCGA-EI-6917-01 19 57840352 57840352 G T ZNF543 Nonsense_Mutation p.E508* 0.42 TCGA-EI-6917-01 19 57868747 57868747 G A ZNF304 Missense_Mutation p.E504K 0.34 deleterious(0.03) possibly_damaging(0.816) TCGA-EI-6917-01 19 57868770 57868770 C T ZNF304 Silent p.F511F 0.25 TCGA-EI-6917-01 19 57967221 57967221 C T VN1R1 Missense_Mutation p.A212T 0.17 tolerated(0.43) benign(0.03) TCGA-EI-6917-01 19 57984870 57984870 G T ZNF772 Missense_Mutation p.F414L 0.29 tolerated(0.17) probably_damaging(0.998) TCGA-EI-6917-01 19 58049739 58049739 G A ZNF549 Missense_Mutation p.R456H 0.14 tolerated(0.54) benign(0.073) TCGA-EI-6917-01 19 58050078 58050078 G A ZNF549 Missense_Mutation p.R569H 0.17 tolerated(0.29) benign(0.03) TCGA-EI-6917-01 19 58101681 58101681 C T ZIK1 Missense_Mutation p.R168C 0.34 tolerated(0.05) benign(0) TCGA-EI-6917-01 19 58232298 58232298 G A ZNF671 Nonsense_Mutation p.R386* 0.32 TCGA-EI-6917-01 19 58232436 58232436 G A ZNF671 Missense_Mutation p.P340S 0.41 tolerated(0.07) probably_damaging(0.963) TCGA-EI-6917-01 19 58265601 58265601 G A ZNF776 Missense_Mutation p.R368Q 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-EI-6917-01 19 58370002 58370002 A C CTD-2583A14.10 Missense_Mutation p.Q74H 0.26 tolerated(0.06) probably_damaging(0.969) TCGA-EI-6917-01 19 58370216 58370216 A C CTD-2583A14.10 Missense_Mutation p.K146Q 0.16 deleterious(0.03) benign(0.411) TCGA-EI-6917-01 19 58452348 58452348 T G ZNF256 Missense_Mutation p.K610Q 0.29 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 19 58477955 58477955 G A C19orf18 Missense_Mutation p.S105L 0.35 deleterious(0.01) possibly_damaging(0.776) TCGA-EI-6917-01 19 58574827 58574827 G A ZNF135 Silent p.P70P 0.24 TCGA-EI-6917-01 19 58596490 58596490 C T ZSCAN18 Silent p.A421A 0.41 TCGA-EI-6917-01 19 58945074 58945074 G T ZNF132 Missense_Mutation p.F579L 0.23 tolerated(0.37) benign(0.185) TCGA-EI-6917-01 19 58945256 58945256 C T ZNF132 Missense_Mutation p.E519K 0.21 tolerated(0.06) benign(0.189) TCGA-EI-6917-01 19 58945986 58945986 C A ZNF132 Missense_Mutation p.E275D 0.19 tolerated(0.1) benign(0.321) TCGA-EI-6917-01 19 59010199 59010199 G A SLC27A5 Missense_Mutation p.R617C 0.16 tolerated(0.06) benign(0.017) TCGA-EI-6917-01 19 59023100 59023100 G A SLC27A5 Missense_Mutation p.L75F 0.15 tolerated(0.26) possibly_damaging(0.834) TCGA-EI-6917-01 19 59061352 59061352 G A TRIM28 Missense_Mutation p.E715K 0.30 deleterious(0.04) possibly_damaging(0.749) TCGA-EI-6917-01 19 59062038 59062038 G A TRIM28 3'UTR 0.40 TCGA-EI-6917-01 19 6213787 6213787 C T MLLT1 Missense_Mutation p.E477K 0.32 tolerated(0.88) benign(0.305) TCGA-EI-6917-01 19 6470366 6470366 G A DENND1C Silent p.G434G 0.16 TCGA-EI-6917-01 19 6475911 6475911 T C DENND1C Missense_Mutation p.Y239C 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 19 6664984 6664984 G A TNFSF14 Nonsense_Mutation p.R226* 0.24 TCGA-EI-6917-01 19 6710737 6710737 C T C3 Silent p.A533A 0.28 TCGA-EI-6917-01 19 6718167 6718167 G A C3 Missense_Mutation p.R148W 0.27 deleterious(0.01) probably_damaging(0.913) TCGA-EI-6917-01 19 6901976 6901976 G A EMR1 Missense_Mutation p.G202E 0.17 deleterious(0) probably_damaging(0.969) TCGA-EI-6917-01 19 6916345 6916345 C T EMR1 Silent p.I462I 0.21 TCGA-EI-6917-01 19 7082919 7082919 G A ZNF557 Missense_Mutation p.E153K 0.24 tolerated(0.07) possibly_damaging(0.81) TCGA-EI-6917-01 19 7083365 7083365 C T ZNF557 Silent p.F301F 0.27 TCGA-EI-6917-01 19 7083460 7083460 C T ZNF557 Missense_Mutation p.S333L 0.29 tolerated(0.12) possibly_damaging(0.776) TCGA-EI-6917-01 19 7166391 7166391 G A INSR Silent p.F545F 0.33 TCGA-EI-6917-01 19 7764634 7764634 G T FCER2 Missense_Mutation p.Q5K 0.27 tolerated(0.69) benign(0.041) TCGA-EI-6917-01 19 8028391 8028391 G A ELAVL1 Silent p.F319F 0.30 TCGA-EI-6917-01 19 8398939 8398939 C T KANK3 Missense_Mutation p.A497T 0.56 tolerated(0.46) possibly_damaging(0.695) TCGA-EI-6917-01 19 8595388 8595388 G A MYO1F Missense_Mutation p.R705W 0.22 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 19 8606858 8606858 G A MYO1F Silent p.S514S 0.29 TCGA-EI-6917-01 19 8670536 8670536 G A ADAMTS10 Silent p.F20F 0.38 TCGA-EI-6917-01 19 8807779 8807779 G A ACTL9 3'UTR 0.24 TCGA-EI-6917-01 19 8921979 8921979 C A ZNF558 Missense_Mutation p.R396I 0.26 deleterious(0) possibly_damaging(0.806) TCGA-EI-6917-01 19 9010678 9010678 C A MUC16 Missense_Mutation p.G12995W 0.26 probably_damaging(0.986) TCGA-EI-6917-01 19 9014701 9014701 G A MUC16 Silent p.S12758S 0.29 TCGA-EI-6917-01 19 9024954 9024954 G A MUC16 Missense_Mutation p.T12303I 0.17 benign(0.371) TCGA-EI-6917-01 19 9063413 9063413 T G MUC16 Missense_Mutation p.K8011N 0.33 unknown(0) TCGA-EI-6917-01 19 9066726 9066726 T C MUC16 Missense_Mutation p.D6907G 0.30 unknown(0) TCGA-EI-6917-01 19 9069669 9069669 G T MUC16 Missense_Mutation p.S5926Y 0.22 unknown(0) TCGA-EI-6917-01 19 9071132 9071132 G T MUC16 Silent p.S5438S 0.24 TCGA-EI-6917-01 19 9071329 9071329 G T MUC16 Missense_Mutation p.L5373M 0.17 unknown(0) TCGA-EI-6917-01 19 9074001 9074001 G A MUC16 Missense_Mutation p.A4482V 0.33 unknown(0) TCGA-EI-6917-01 19 9074182 9074182 C A MUC16 Missense_Mutation p.D4422Y 0.19 unknown(0) TCGA-EI-6917-01 19 9077766 9077766 G T MUC16 Missense_Mutation p.S3227Y 0.18 unknown(0) TCGA-EI-6917-01 19 9082697 9082697 T C MUC16 Missense_Mutation p.T3040A 0.16 unknown(0) TCGA-EI-6917-01 19 9090339 9090339 C T MUC16 Silent p.R492R 0.18 TCGA-EI-6917-01 19 9090796 9090796 G A MUC16 Missense_Mutation p.A340V 0.22 unknown(0) TCGA-EI-6917-01 19 9091047 9091047 C A MUC16 Silent p.L256L 0.18 TCGA-EI-6917-01 19 9204483 9204483 C T OR1M1 Missense_Mutation p.S188L 0.36 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 19 9298192 9298192 T C OR7D2 3'UTR 0.32 TCGA-EI-6917-01 19 9362217 9362217 T - OR7E24 Frame_Shift_Del p.F168Lfs*12 0.24 TCGA-EI-6917-01 19 9492102 9492102 G T ZNF177 Missense_Mutation p.E365D 0.33 deleterious(0.03) probably_damaging(0.951) TCGA-EI-6917-01 19 9524066 9524066 C T ZNF266 Missense_Mutation p.R512Q 0.54 tolerated(0.11) probably_damaging(0.996) TCGA-EI-6917-01 19 9524084 9524084 G A ZNF266 Missense_Mutation p.S506L 0.24 tolerated(0.64) benign(0.159) TCGA-EI-6917-01 19 9578016 9578016 C T ZNF560 Missense_Mutation p.R536Q 0.25 tolerated(0.13) benign(0) TCGA-EI-6917-01 19 9584964 9584964 G C ZNF560 Missense_Mutation p.T23S 0.25 tolerated(0.42) possibly_damaging(0.874) TCGA-EI-6917-01 19 9677271 9677271 T G ZNF121 Missense_Mutation p.E173A 0.30 deleterious(0.04) probably_damaging(0.95) TCGA-EI-6917-01 19 9800871 9800871 T G ZNF812 Missense_Mutation p.E436D 0.20 tolerated(0.62) possibly_damaging(0.816) TCGA-EI-6917-01 19 9801205 9801205 C T ZNF812 Missense_Mutation p.R325Q 0.27 tolerated(0.06) benign(0.088) TCGA-EI-6917-01 19 9869139 9869139 C T ZNF846 Missense_Mutation p.R205K 0.21 tolerated(1) benign(0.026) TCGA-EI-6917-01 1 100154371 100154371 G A PALMD Silent p.K185K 0.26 TCGA-EI-6917-01 1 100614205 100614205 G T TRMT13 Missense_Mutation p.K425N 0.22 deleterious(0.01) benign(0.371) TCGA-EI-6917-01 1 101006820 101006820 G T GPR88 3'UTR 0.17 TCGA-EI-6917-01 1 101706185 101706185 C A S1PR1 3'UTR 0.19 TCGA-EI-6917-01 1 102270446 102270446 T C OLFM3 Missense_Mutation p.N242S 0.27 tolerated(0.13) probably_damaging(0.987) TCGA-EI-6917-01 1 104114127 104114127 C A AMY2B Intron 0.26 TCGA-EI-6917-01 1 104114357 104114357 C T AMY2B Nonsense_Mutation p.R45* 0.23 TCGA-EI-6917-01 1 10713944 10713944 C T CASZ1 Missense_Mutation p.D724N 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-EI-6917-01 1 10720107 10720107 C T CASZ1 Missense_Mutation p.S331N 0.18 tolerated_low_confidence(1) benign(0.008) TCGA-EI-6917-01 1 107599498 107599498 T C PRMT6 Missense_Mutation p.V54A 0.23 deleterious(0) benign(0.119) TCGA-EI-6917-01 1 108417615 108417615 T C VAV3 Missense_Mutation p.T77A 0.31 deleterious(0) benign(0.235) TCGA-EI-6917-01 1 108766164 108766164 C T NBPF4 3'UTR 0.39 TCGA-EI-6917-01 1 108918585 108918585 C A NBPF6 5'UTR 0.41 TCGA-EI-6917-01 1 109202514 109202514 C T HENMT1 5'UTR 0.19 TCGA-EI-6917-01 1 109241795 109241795 G T PRPF38B Missense_Mutation p.R265I 0.20 tolerated(0.06) unknown(0) TCGA-EI-6917-01 1 109284582 109284582 G T FNDC7 3'UTR 0.33 TCGA-EI-6917-01 1 109358664 109358664 C A AKNAD1 3'UTR 0.37 TCGA-EI-6917-01 1 109365776 109365776 C A AKNAD1 Intron 0.15 TCGA-EI-6917-01 1 110009701 110009701 G A SYPL2 Silent p.G25G 0.25 TCGA-EI-6917-01 1 110018266 110018266 C T SYPL2 Missense_Mutation p.R65C 0.25 deleterious(0.02) possibly_damaging(0.659) TCGA-EI-6917-01 1 110019497 110019497 C T SYPL2 Silent p.F118F 0.32 TCGA-EI-6917-01 1 11008227 11008227 C T C1orf127 Silent p.P655P 0.21 TCGA-EI-6917-01 1 110256334 110256334 T C GSTM5 Missense_Mutation p.V104A 0.23 tolerated(0.75) benign(0.003) TCGA-EI-6917-01 1 110279777 110279777 G A GSTM3 Silent p.I198I 0.18 TCGA-EI-6917-01 1 110656037 110656037 G T UBL4B 3'UTR 0.28 TCGA-EI-6917-01 1 110656071 110656071 T A UBL4B 3'UTR 0.26 TCGA-EI-6917-01 1 110754536 110754536 G A KCNC4 Missense_Mutation p.D139N 0.54 deleterious(0) possibly_damaging(0.881) TCGA-EI-6917-01 1 110883457 110883457 G A RBM15 Missense_Mutation p.R477Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 110923702 110923702 C T SLC16A4 Missense_Mutation p.R143Q 0.32 deleterious(0.02) possibly_damaging(0.684) TCGA-EI-6917-01 1 111060956 111060956 G A KCNA10 Missense_Mutation p.R152W 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 111061496 111061496 G A KCNA10 5'UTR 0.27 TCGA-EI-6917-01 1 111061736 111061736 G A KCNA10 5'UTR 0.22 TCGA-EI-6917-01 1 111146221 111146221 G A KCNA2 Missense_Mutation p.A395V 0.38 deleterious(0.04) probably_damaging(0.989) TCGA-EI-6917-01 1 111146694 111146694 G T KCNA2 Missense_Mutation p.F237L 0.28 tolerated(1) probably_damaging(0.953) TCGA-EI-6917-01 1 111216610 111216610 G A KCNA3 Silent p.F274F 0.24 TCGA-EI-6917-01 1 111440442 111440442 G A CD53 Silent p.A172A 0.28 TCGA-EI-6917-01 1 111784863 111784863 G T CHI3L2 Missense_Mutation p.K350N 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 1 113063080 113063080 C T WNT2B Silent p.D375D 0.30 TCGA-EI-6917-01 1 113143443 113143443 T G ST7L Missense_Mutation p.N160T 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 1 113234410 113234410 C T MOV10 Silent p.I320I 0.21 TCGA-EI-6917-01 1 113255571 113255571 C T PPM1J Missense_Mutation p.R175H 0.24 tolerated(0.65) benign(0.005) TCGA-EI-6917-01 1 113256145 113256145 C T PPM1J Missense_Mutation p.V139I 0.26 tolerated(0.25) benign(0.013) TCGA-EI-6917-01 1 113266738 113266738 A G FAM19A3 Missense_Mutation p.D146G 0.18 tolerated(0.27) possibly_damaging(0.68) TCGA-EI-6917-01 1 113642869 113642869 G T LRIG2 Missense_Mutation p.K403N 0.26 deleterious(0.01) possibly_damaging(0.493) TCGA-EI-6917-01 1 113642873 113642873 G A LRIG2 Missense_Mutation p.A405T 0.23 deleterious(0.02) probably_damaging(0.971) TCGA-EI-6917-01 1 114226539 114226539 C A MAGI3 Missense_Mutation p.S1450Y 0.27 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-EI-6917-01 1 114399266 114399266 G T PTPN22 Intron 0.23 TCGA-EI-6917-01 1 114442773 114442773 G A AP4B1 Silent p.S289S 0.17 TCGA-EI-6917-01 1 115218219 115218219 C A AMPD1 Missense_Mutation p.K570N 0.24 tolerated(0.23) benign(0.029) TCGA-EI-6917-01 1 115275363 115275363 C T CSDE1 Silent p.T350T 0.25 TCGA-EI-6917-01 1 11562943 11562943 G A PTCHD2 Silent p.K435K 0.26 TCGA-EI-6917-01 1 116243646 116243646 A C CASQ2 3'UTR 0.32 TCGA-EI-6917-01 1 116247833 116247833 C T CASQ2 Missense_Mutation p.D307N 0.21 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 1 116382927 116382927 G A NHLH2 5'UTR 0.20 TCGA-EI-6917-01 1 116563400 116563400 C A SLC22A15 Missense_Mutation p.F164L 0.23 tolerated(0.45) benign(0.003) TCGA-EI-6917-01 1 116609274 116609274 C T SLC22A15 Missense_Mutation p.S500L 0.27 tolerated(0.05) benign(0.343) TCGA-EI-6917-01 1 116932965 116932965 G A ATP1A1 Missense_Mutation p.R385Q 0.28 deleterious(0) probably_damaging(0.969) TCGA-EI-6917-01 1 116933017 116933017 G A ATP1A1 Silent p.T402T 0.27 TCGA-EI-6917-01 1 116947182 116947182 G A ATP1A1 3'UTR 0.21 TCGA-EI-6917-01 1 116948750 116948750 G A ATP1A1 3'Flank 0.28 TCGA-EI-6917-01 1 117078761 117078761 G A CD58 Nonsense_Mutation p.R152* 0.18 TCGA-EI-6917-01 1 117297419 117297419 G T CD2 Missense_Mutation p.E76D 0.08 tolerated(0.62) benign(0) TCGA-EI-6917-01 1 117544417 117544417 G A CD101 5'UTR 0.30 TCGA-EI-6917-01 1 117944839 117944839 C T MAN1A2 Nonsense_Mutation p.R112* 0.28 TCGA-EI-6917-01 1 117963225 117963225 G A MAN1A2 Missense_Mutation p.R270Q 0.14 deleterious(0.03) probably_damaging(0.98) TCGA-EI-6917-01 1 118523901 118523901 G A SPAG17 Missense_Mutation p.S1999F 0.28 deleterious(0.03) possibly_damaging(0.648) TCGA-EI-6917-01 1 118527374 118527374 T C SPAG17 Missense_Mutation p.M1901V 0.28 deleterious(0.04) benign(0.048) TCGA-EI-6917-01 1 118530736 118530736 C A SPAG17 Missense_Mutation p.K1871N 0.17 tolerated(0.08) benign(0.009) TCGA-EI-6917-01 1 118558646 118558646 C A SPAG17 Missense_Mutation p.R1410I 0.25 deleterious(0) possibly_damaging(0.888) TCGA-EI-6917-01 1 118634590 118634590 C A SPAG17 Missense_Mutation p.K403N 0.18 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 1 11917600 11917600 A G NPPB 3'UTR 0.45 TCGA-EI-6917-01 1 119927624 119927624 G A HAO2 Missense_Mutation p.R170Q 0.28 deleterious(0.02) benign(0.018) TCGA-EI-6917-01 1 119934803 119934803 G A HAO2 Missense_Mutation p.R281Q 0.25 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 1 120436877 120436877 G A ADAM30 Missense_Mutation p.R695C 0.18 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 1 120458869 120458869 G A NOTCH2 Missense_Mutation p.T2159M 0.23 deleterious(0.04) possibly_damaging(0.742) TCGA-EI-6917-01 1 120928521 120928521 C T FCGR1B Intron 0.24 TCGA-EI-6917-01 1 12157168 12157168 G A TNFRSF8 Silent p.P54P 0.31 TCGA-EI-6917-01 1 12328784 12328784 T C VPS13D Missense_Mutation p.V608A 0.22 possibly_damaging(0.888) TCGA-EI-6917-01 1 12429752 12429752 C A VPS13D Missense_Mutation p.F3601L 0.23 probably_damaging(0.953) TCGA-EI-6917-01 1 12785585 12785585 A C AADACL3 Missense_Mutation p.R225S 0.31 tolerated(0.12) possibly_damaging(0.451) TCGA-EI-6917-01 1 12907981 12907981 G A HNRNPCL1 Silent p.F54F 0.12 TCGA-EI-6917-01 1 1325728 1325728 A G CCNL2 Silent p.G296G 0.25 TCGA-EI-6917-01 1 14068567 14068567 G A PRDM2 Missense_Mutation p.R100Q 0.30 probably_damaging(0.999) TCGA-EI-6917-01 1 14113107 14113107 G A PRDM2 Intron 0.30 TCGA-EI-6917-01 1 144825422 144825422 G A NBPF9 Silent p.S457S 0.15 TCGA-EI-6917-01 1 144903190 144903190 C T PDE4DIP Missense_Mutation p.R901Q 0.29 tolerated(0.44) benign(0.032) TCGA-EI-6917-01 1 144904698 144904698 G A PDE4DIP Missense_Mutation p.R872W 0.24 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 1 144994678 144994678 C A PDE4DIP Missense_Mutation p.E18D 0.09 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 1 145417453 145417453 C A HFE2 3'UTR 0.09 TCGA-EI-6917-01 1 145537508 145537508 A G ITGA10 Missense_Mutation p.T840A 0.35 tolerated(0.42) benign(0.047) TCGA-EI-6917-01 1 145560112 145560112 G A ANKRD35 Missense_Mutation p.E200K 0.18 deleterious(0) possibly_damaging(0.881) TCGA-EI-6917-01 1 145588452 145588452 G A NUDT17 Nonsense_Mutation p.R141* 0.35 TCGA-EI-6917-01 1 145663182 145663182 G A RNF115 Silent p.T81T 0.36 TCGA-EI-6917-01 1 146466148 146466148 C A NBPF12 3'UTR 0.21 TCGA-EI-6917-01 1 147231121 147231121 G A GJA5 Missense_Mutation p.R76C 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 148594466 148594466 G A NBPF15 Silent p.S613S 0.20 TCGA-EI-6917-01 1 148594553 148594553 C T NBPF15 Silent p.F642F 0.21 TCGA-EI-6917-01 1 149399222 149399222 G A HIST2H3PS2 3'Flank 0.20 TCGA-EI-6917-01 1 149939440 149939440 C T OTUD7B Missense_Mutation p.R94H 0.36 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 150230532 150230532 C T CA14 Silent p.F3F 0.31 TCGA-EI-6917-01 1 150234942 150234942 G A CA14 Missense_Mutation p.D140N 0.31 tolerated(1) benign(0.177) TCGA-EI-6917-01 1 150484025 150484025 C T ECM1 Silent p.F294F 0.38 TCGA-EI-6917-01 1 150680838 150680838 C A HORMAD1 Missense_Mutation p.K147N 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 150960648 150960648 C T ANXA9 Missense_Mutation p.A260V 0.23 deleterious(0) possibly_damaging(0.886) TCGA-EI-6917-01 1 150967914 150967914 C A ANXA9 3'UTR 0.24 TCGA-EI-6917-01 1 151011442 151011442 G A BNIPL Missense_Mutation p.E125K 0.22 deleterious(0.02) possibly_damaging(0.709) TCGA-EI-6917-01 1 151019275 151019275 G A BNIPL 3'UTR 0.17 TCGA-EI-6917-01 1 151021210 151021210 G T C1orf56 Missense_Mutation p.S296I 0.28 tolerated(0.26) benign(0.044) TCGA-EI-6917-01 1 151111186 151111186 G A SEMA6C Missense_Mutation p.R126C 0.16 deleterious(0) possibly_damaging(0.835) TCGA-EI-6917-01 1 151112146 151112146 C T SEMA6C Missense_Mutation p.E89K 0.34 tolerated(0.08) benign(0) TCGA-EI-6917-01 1 151400443 151400443 C T POGZ Missense_Mutation p.E312K 0.25 tolerated(0.09) possibly_damaging(0.836) TCGA-EI-6917-01 1 151694571 151694571 C T RIIAD1 Missense_Mutation p.R32W 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 151748984 151748984 G A TDRKH Silent p.I325I 0.29 TCGA-EI-6917-01 1 151751698 151751698 G A TDRKH Missense_Mutation p.R148C 0.24 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 1 152057599 152057599 G A TCHHL1 Silent p.S853S 0.23 TCGA-EI-6917-01 1 152084823 152084823 G A TCHH Silent p.R290R 0.22 TCGA-EI-6917-01 1 152283866 152283866 G A FLG Missense_Mutation p.R1166C 0.25 possibly_damaging(0.689) TCGA-EI-6917-01 1 152286128 152286128 G A FLG Missense_Mutation p.R412C 0.38 probably_damaging(0.976) TCGA-EI-6917-01 1 152323212 152323212 T C FLG2 Silent p.G2350G 0.28 TCGA-EI-6917-01 1 152325109 152325109 G A FLG2 Missense_Mutation p.S1718F 0.24 possibly_damaging(0.485) TCGA-EI-6917-01 1 152325520 152325520 T C FLG2 Missense_Mutation p.D1581G 0.24 probably_damaging(0.999) TCGA-EI-6917-01 1 152330039 152330039 G A FLG2 Missense_Mutation p.L75F 0.28 unknown(0) TCGA-EI-6917-01 1 152538604 152538604 T C LCE3E Silent p.V27V 0.29 TCGA-EI-6917-01 1 152659695 152659695 T C LCE2B 3'UTR 0.23 TCGA-EI-6917-01 1 153800733 153800733 G A GATAD2B Nonsense_Mutation p.R31* 0.33 TCGA-EI-6917-01 1 153925092 153925092 G T CRTC2 Missense_Mutation p.N219K 0.32 deleterious(0.01) possibly_damaging(0.867) TCGA-EI-6917-01 1 153964547 153964547 C T RPS27 Missense_Mutation p.S78F 0.28 deleterious(0.01) benign(0.229) TCGA-EI-6917-01 1 154030619 154030619 T C NUP210L Missense_Mutation p.Y1018C 0.32 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 1 154144874 154144874 G A TPM3 Intron 0.23 TCGA-EI-6917-01 1 154458462 154458462 G A SHE Nonsense_Mutation p.R420* 0.21 TCGA-EI-6917-01 1 154524598 154524598 C T UBE2Q1 Missense_Mutation p.D313N 0.19 deleterious(0.04) probably_damaging(0.916) TCGA-EI-6917-01 1 154560644 154560644 G A ADAR Silent p.F992F 0.17 TCGA-EI-6917-01 1 154938249 154938249 C T SHC1 Missense_Mutation p.E466K 0.20 deleterious(0.01) possibly_damaging(0.63) TCGA-EI-6917-01 1 155028655 155028655 G A ADAM15 Missense_Mutation p.E282K 0.19 tolerated(0.09) benign(0.021) TCGA-EI-6917-01 1 155171804 155171804 A C THBS3 Missense_Mutation p.C374G 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 155188194 155188194 G A MTX1 3'Flank 0.25 TCGA-EI-6917-01 1 155317653 155317653 G A ASH1L Missense_Mutation p.R2533C 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EI-6917-01 1 155448901 155448901 G A ASH1L Missense_Mutation p.R1254C 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-EI-6917-01 1 155630137 155630137 G A YY1AP1 Nonsense_Mutation p.R660* 0.25 TCGA-EI-6917-01 1 155695270 155695270 G A DAP3 Missense_Mutation p.R123Q 0.31 deleterious(0) probably_damaging(0.978) TCGA-EI-6917-01 1 15578301 15578301 C T FHAD1 Silent p.S7S 0.26 TCGA-EI-6917-01 1 155921564 155921564 G A ARHGEF2 Nonsense_Mutation p.R726* 0.36 TCGA-EI-6917-01 1 156281837 156281837 G T CCT3 Missense_Mutation p.L384I 0.17 tolerated(0.15) benign(0.078) TCGA-EI-6917-01 1 156449404 156449404 C A MEF2D Missense_Mutation p.G194V 0.12 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 156834547 156834547 C T NTRK1 Silent p.F105F 0.31 TCGA-EI-6917-01 1 156876623 156876623 G A PEAR1 Missense_Mutation p.D199N 0.28 tolerated(0.37) benign(0.007) TCGA-EI-6917-01 1 157103704 157103704 G T ETV3 Intron 0.44 TCGA-EI-6917-01 1 157805841 157805841 C T CD5L Missense_Mutation p.D54N 0.26 tolerated(0.25) benign(0.057) TCGA-EI-6917-01 1 158150828 158150828 G T CD1D 5'UTR 0.50 TCGA-EI-6917-01 1 158368344 158368344 G T OR10T2 Missense_Mutation p.L305I 0.14 tolerated(0.53) benign(0.005) TCGA-EI-6917-01 1 158368620 158368620 G A OR10T2 Silent p.L213L 0.19 TCGA-EI-6917-01 1 158576364 158576364 A G OR10Z1 Missense_Mutation p.I46V 0.20 tolerated(1) probably_damaging(0.952) TCGA-EI-6917-01 1 158613193 158613193 T A SPTA1 Missense_Mutation p.E1454V 0.25 deleterious(0.02) benign(0.274) TCGA-EI-6917-01 1 158687164 158687164 G T OR6K3 Missense_Mutation p.P248T 0.20 tolerated(0.16) benign(0) TCGA-EI-6917-01 1 158725176 158725176 A G OR6K6 Missense_Mutation p.I191V 0.08 tolerated(0.31) benign(0.086) TCGA-EI-6917-01 1 158811977 158811977 A G MNDA Missense_Mutation p.K12E 0.29 deleterious(0.03) possibly_damaging(0.715) TCGA-EI-6917-01 1 158913695 158913695 G A PYHIN1 Missense_Mutation p.R373Q 0.27 tolerated(0.52) benign(0.001) TCGA-EI-6917-01 1 159684337 159684337 C T CRP 5'UTR 0.22 TCGA-EI-6917-01 1 159900506 159900506 C T IGSF9 Missense_Mutation p.E597K 0.31 deleterious(0) possibly_damaging(0.769) TCGA-EI-6917-01 1 160057371 160057371 G A KCNJ9 Missense_Mutation p.E316K 0.09 tolerated(0.52) probably_damaging(0.916) TCGA-EI-6917-01 1 160121889 160121889 G T ATP1A4 Missense_Mutation p.R20I 0.24 tolerated(0.13) benign(0.07) TCGA-EI-6917-01 1 160253413 160253413 G A PEX19 Silent p.F29F 0.22 TCGA-EI-6917-01 1 160269037 160269037 C T COPA Missense_Mutation p.R571Q 0.29 deleterious(0.02) benign(0.131) TCGA-EI-6917-01 1 160313076 160313076 G A NCSTN 5'UTR 0.27 TCGA-EI-6917-01 1 16064431 16064431 C T SLC25A34 Missense_Mutation p.T129M 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6917-01 1 16064630 16064630 C T SLC25A34 Missense_Mutation p.L163F 0.20 tolerated(0.25) benign(0.024) TCGA-EI-6917-01 1 160651073 160651073 A T CD48 Missense_Mutation p.S191T 0.19 deleterious(0) probably_damaging(0.936) TCGA-EI-6917-01 1 16074114 16074114 C T TMEM82 Missense_Mutation p.S340L 0.25 tolerated(0.1) unknown(0) TCGA-EI-6917-01 1 160811398 160811398 C T CD244 Missense_Mutation p.A119T 0.23 tolerated(0.39) benign(0.01) TCGA-EI-6917-01 1 161192228 161192228 G A AL590714.1 Missense_Mutation p.E55K 0.23 possibly_damaging(0.497) TCGA-EI-6917-01 1 161681738 161681738 C T FCRLA Missense_Mutation p.P195S 0.19 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 161695923 161695923 G T FCRLB Intron 0.25 TCGA-EI-6917-01 1 161721474 161721474 C T DUSP12 Nonsense_Mutation p.R121* 0.26 TCGA-EI-6917-01 1 161721744 161721744 C T DUSP12 Missense_Mutation p.R183C 0.16 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 161976233 161976233 C T OLFML2B Missense_Mutation p.E193K 0.19 tolerated(0.33) benign(0.003) TCGA-EI-6917-01 1 162344300 162344300 C T C1orf111 Silent p.E108E 0.14 TCGA-EI-6917-01 1 162372566 162372566 C T SH2D1B Missense_Mutation p.R54Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 1 16254645 16254645 G A SPEN Missense_Mutation p.R637Q 0.35 probably_damaging(0.99) TCGA-EI-6917-01 1 16256832 16256832 G A SPEN Missense_Mutation p.R1366Q 0.29 probably_damaging(0.99) TCGA-EI-6917-01 1 162741963 162741963 G T DDR2 Missense_Mutation p.D552Y 0.24 deleterious(0) probably_damaging(0.98) TCGA-EI-6917-01 1 163042192 163042192 G A RGS4 Missense_Mutation p.D115N 0.13 deleterious(0.04) possibly_damaging(0.532) TCGA-EI-6917-01 1 163042197 163042197 G T RGS4 Missense_Mutation p.M116I 0.33 tolerated(0.28) benign(0.005) TCGA-EI-6917-01 1 165377504 165377504 C T RXRG Silent p.S366S 0.18 TCGA-EI-6917-01 1 166810302 166810302 C T POGK Nonsense_Mutation p.R37* 0.21 TCGA-EI-6917-01 1 166963285 166963285 C T MAEL Nonsense_Mutation p.R168* 0.28 TCGA-EI-6917-01 1 167064091 167064091 C T DUSP27 Missense_Mutation p.A2V 0.24 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 1 167096393 167096393 G A DUSP27 Silent p.T675T 0.23 TCGA-EI-6917-01 1 16721628 16721628 G A SZRD1 Missense_Mutation p.R151H 0.23 tolerated(0.35) benign(0.003) TCGA-EI-6917-01 1 167358976 167358976 G A POU2F1 Missense_Mutation p.R322Q 0.31 deleterious(0) unknown(0) TCGA-EI-6917-01 1 167400950 167400950 C T CD247 Missense_Mutation p.A155T 0.23 deleterious(0) probably_damaging(0.951) TCGA-EI-6917-01 1 167663470 167663470 C T RCSD1 Silent p.S135S 0.29 TCGA-EI-6917-01 1 167839608 167839608 C A ADCY10 Missense_Mutation p.K501N 0.30 tolerated(0.08) benign(0.027) TCGA-EI-6917-01 1 168066422 168066422 C T GPR161 Silent p.G161G 0.18 TCGA-EI-6917-01 1 168073894 168073894 G A GPR161 Silent p.F85F 0.27 TCGA-EI-6917-01 1 168153312 168153312 G A TIPRL Missense_Mutation p.E93K 0.22 deleterious(0.03) benign(0.314) TCGA-EI-6917-01 1 169199982 169199982 G A NME7 Nonsense_Mutation p.R322* 0.27 TCGA-EI-6917-01 1 169293678 169293678 G A NME7 Nonsense_Mutation p.R22* 0.18 TCGA-EI-6917-01 1 169349822 169349822 C T BLZF1 Missense_Mutation p.R258C 0.24 deleterious(0) possibly_damaging(0.684) TCGA-EI-6917-01 1 16945566 16945566 C T RP5-1182A14.5 3'Flank 0.10 TCGA-EI-6917-01 1 169511796 169511796 G A F5 Silent p.V844V 0.21 TCGA-EI-6917-01 1 169511863 169511863 G T F5 Missense_Mutation p.S822Y 0.21 tolerated(0.09) possibly_damaging(0.508) TCGA-EI-6917-01 1 169525883 169525883 C T F5 Splice_Site p.X318_splice 0.26 TCGA-EI-6917-01 1 169551753 169551753 G T F5 Missense_Mutation p.L56I 0.19 tolerated(0.46) benign(0.006) TCGA-EI-6917-01 1 169566312 169566312 T C SELP Missense_Mutation p.D603G 0.30 tolerated(0.15) benign(0.001) TCGA-EI-6917-01 1 169673763 169673763 C A SELL Nonsense_Mutation p.E251* 0.23 TCGA-EI-6917-01 1 169776981 169776981 G T C1orf112 Missense_Mutation p.D205Y 0.26 deleterious(0.01) probably_damaging(0.97) TCGA-EI-6917-01 1 170934306 170934306 G A MROH9 Nonsense_Mutation p.W130* 0.18 TCGA-EI-6917-01 1 170967491 170967491 C A MROH9 Intron 0.10 TCGA-EI-6917-01 1 170993790 170993790 G A MROH9 Missense_Mutation p.A688T 0.21 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 1 170993808 170993808 A C MROH9 Missense_Mutation p.K694Q 0.22 tolerated(0.47) benign(0.156) TCGA-EI-6917-01 1 171033536 171033536 C A MROH9 3'UTR 0.25 TCGA-EI-6917-01 1 171116779 171116779 C T FMO6P Nonsense_Mutation p.R167* 0.32 TCGA-EI-6917-01 1 171174461 171174461 C T FMO2 Missense_Mutation p.R291C 0.26 tolerated(0.47) benign(0.141) TCGA-EI-6917-01 1 171176896 171176896 A G FMO2 Missense_Mutation p.D408G 0.16 deleterious(0) possibly_damaging(0.673) TCGA-EI-6917-01 1 171292236 171292236 G A FMO4 Missense_Mutation p.E76K 0.26 deleterious(0) probably_damaging(0.989) TCGA-EI-6917-01 1 171303651 171303651 C T FMO4 Missense_Mutation p.A310V 0.21 tolerated(0.63) benign(0.09) TCGA-EI-6917-01 1 171481211 171481211 G A PRRC2C 5'UTR 0.27 TCGA-EI-6917-01 1 171621268 171621268 C A MYOC Nonsense_Mutation p.E162* 0.24 TCGA-EI-6917-01 1 171956827 171956827 G T DNM3 Missense_Mutation p.K89N 0.32 deleterious(0) possibly_damaging(0.856) TCGA-EI-6917-01 1 172011246 172011246 C T DNM3 Missense_Mutation p.R364C 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 1 172017787 172017787 C T DNM3 Missense_Mutation p.A411V 0.27 tolerated(0.12) benign(0.165) TCGA-EI-6917-01 1 172222758 172222758 C T DNM3 Missense_Mutation p.R569W 0.32 deleterious(0) possibly_damaging(0.666) TCGA-EI-6917-01 1 172277926 172277926 G A DNM3 Missense_Mutation p.D610N 0.17 deleterious(0.04) possibly_damaging(0.851) TCGA-EI-6917-01 1 172410758 172410758 C A PIGC 3'UTR 0.25 TCGA-EI-6917-01 1 172560129 172560129 G A SUCO Missense_Mutation p.R944Q 0.26 deleterious(0) possibly_damaging(0.509) TCGA-EI-6917-01 1 173157689 173157689 C T TNFSF4 Missense_Mutation p.R58Q 0.30 tolerated(0.13) benign(0.048) TCGA-EI-6917-01 1 173455475 173455475 C A PRDX6 Missense_Mutation p.L161I 0.24 tolerated(0.11) probably_damaging(0.948) TCGA-EI-6917-01 1 173476113 173476113 T C SLC9C2 Missense_Mutation p.D1036G 0.25 deleterious(0.01) benign(0.047) TCGA-EI-6917-01 1 173502853 173502853 G T SLC9C2 Silent p.I686I 0.22 TCGA-EI-6917-01 1 173503760 173503760 C A SLC9C2 Nonsense_Mutation p.G613* 0.29 TCGA-EI-6917-01 1 173523928 173523928 G T SLC9C2 Nonsense_Mutation p.S414* 0.16 TCGA-EI-6917-01 1 173628473 173628473 C A ANKRD45 Nonsense_Mutation p.E29* 0.22 TCGA-EI-6917-01 1 173839451 173839451 C T ZBTB37 Missense_Mutation p.R30C 0.26 deleterious(0) probably_damaging(0.955) TCGA-EI-6917-01 1 173855095 173855095 C T ZBTB37 Missense_Mutation p.R449C 0.28 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 1 173886401 173886401 C T SERPINC1 5'UTR 0.32 TCGA-EI-6917-01 1 175052988 175052988 G A TNN Missense_Mutation p.R384Q 0.24 tolerated(0.39) benign(0.025) TCGA-EI-6917-01 1 175332878 175332878 G A TNR Silent p.F891F 0.33 TCGA-EI-6917-01 1 175360531 175360531 G A TNR Missense_Mutation p.T467M 0.16 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 1 175362997 175362997 C T TNR Silent p.T425T 0.21 TCGA-EI-6917-01 1 176525981 176525981 G A PAPPA2 Missense_Mutation p.A175T 0.14 tolerated_low_confidence(1) benign(0) TCGA-EI-6917-01 1 176833536 176833536 C T ASTN1 Missense_Mutation p.E1257K 0.26 deleterious_low_confidence(0) benign(0.292) TCGA-EI-6917-01 1 17690220 17690220 C A PADI4 Missense_Mutation p.F654L 0.23 deleterious(0.04) benign(0.128) TCGA-EI-6917-01 1 176903403 176903403 G A ASTN1 Silent p.F852F 0.64 TCGA-EI-6917-01 1 176926826 176926826 G T ASTN1 Silent p.S625S 0.24 TCGA-EI-6917-01 1 176934367 176934367 C T ASTN1 Nonsense_Mutation p.W510* 0.22 TCGA-EI-6917-01 1 176983951 176983951 C T ASTN1 Missense_Mutation p.R500Q 0.17 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 1 177249957 177249957 C T BRINP2 Missense_Mutation p.R549C 0.40 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 1 178252780 178252780 G A RASAL2 Missense_Mutation p.C95Y 0.27 deleterious(0) possibly_damaging(0.862) TCGA-EI-6917-01 1 178834420 178834420 T G ANGPTL1 Missense_Mutation p.E164D 0.18 tolerated(0.1) benign(0.02) TCGA-EI-6917-01 1 179078125 179078125 C A ABL2 Missense_Mutation p.K759N 0.26 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-EI-6917-01 1 179081513 179081513 C T ABL2 Missense_Mutation p.D528N 0.24 deleterious(0.02) possibly_damaging(0.823) TCGA-EI-6917-01 1 179348537 179348537 G T AXDND1 Missense_Mutation p.K167N 0.44 deleterious(0.01) possibly_damaging(0.788) TCGA-EI-6917-01 1 179561886 179561886 C T TDRD5 Nonsense_Mutation p.R46* 0.29 TCGA-EI-6917-01 1 179609005 179609005 C T TDRD5 Nonsense_Mutation p.R518* 0.21 TCGA-EI-6917-01 1 179961334 179961334 C T CEP350 Missense_Mutation p.R125C 0.25 benign(0.189) TCGA-EI-6917-01 1 179989576 179989576 C A CEP350 Missense_Mutation p.F889L 0.24 possibly_damaging(0.701) TCGA-EI-6917-01 1 180000483 180000483 G T CEP350 Missense_Mutation p.Q1193H 0.18 benign(0.005) TCGA-EI-6917-01 1 180053213 180053213 G A CEP350 Missense_Mutation p.R2062Q 0.27 probably_damaging(0.999) TCGA-EI-6917-01 1 180061991 180061991 G T CEP350 Nonsense_Mutation p.E2251* 0.32 TCGA-EI-6917-01 1 181452842 181452842 G A CACNA1E 5'Flank 0.32 TCGA-EI-6917-01 1 181767494 181767494 C T CACNA1E Missense_Mutation p.R2156C 0.24 deleterious(0) probably_damaging(0.973) TCGA-EI-6917-01 1 182353566 182353566 C T GLUL Missense_Mutation p.D366N 0.26 tolerated(0.13) benign(0) TCGA-EI-6917-01 1 182353707 182353707 G A GLUL Missense_Mutation p.R319C 0.16 deleterious(0.03) possibly_damaging(0.59) TCGA-EI-6917-01 1 182356408 182356408 G A GLUL Silent p.F62F 0.31 TCGA-EI-6917-01 1 182509539 182509539 C A RGSL1 Missense_Mutation p.F884L 0.13 deleterious(0.03) benign(0.059) TCGA-EI-6917-01 1 182636089 182636089 G A RGS8 Nonsense_Mutation p.R34* 0.36 TCGA-EI-6917-01 1 182787787 182787787 G A NPL Missense_Mutation p.R190H 0.18 tolerated(0.43) benign(0.001) TCGA-EI-6917-01 1 182798000 182798000 C A NPL Missense_Mutation p.S307Y 0.21 deleterious(0.04) benign(0.172) TCGA-EI-6917-01 1 182798854 182798854 C T NPL 3'UTR 0.20 TCGA-EI-6917-01 1 182828186 182828186 G A DHX9 Silent p.E358E 0.14 TCGA-EI-6917-01 1 182874645 182874645 T C SHCBP1L Missense_Mutation p.D441G 0.24 tolerated(0.11) probably_damaging(0.994) TCGA-EI-6917-01 1 183206576 183206576 G T LAMC2 Missense_Mutation p.K897N 0.30 tolerated(0.24) benign(0) TCGA-EI-6917-01 1 183253115 183253115 C T NMNAT2 Intron 0.22 TCGA-EI-6917-01 1 183498121 183498121 C T SMG7 Silent p.F217F 0.28 TCGA-EI-6917-01 1 183521222 183521222 G A SMG7 Intron 0.29 TCGA-EI-6917-01 1 183533146 183533146 C T NCF2 Silent p.E340E 0.32 TCGA-EI-6917-01 1 183852919 183852919 G T RGL1 Splice_Site p.X239_splice 0.30 TCGA-EI-6917-01 1 183907750 183907750 C T COLGALT2 3'UTR 0.34 TCGA-EI-6917-01 1 183909830 183909830 T C COLGALT2 Missense_Mutation p.T497A 0.32 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 1 183920158 183920158 G A COLGALT2 Silent p.V373V 0.27 TCGA-EI-6917-01 1 184702078 184702079 - T EDEM3 Frame_Shift_Ins p.G169Rfs*2 0.20 TCGA-EI-6917-01 1 184702120 184702120 G T EDEM3 Missense_Mutation p.L155I 0.25 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 184706773 184706773 G A EDEM3 Missense_Mutation p.R93C 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 185056762 185056762 G A RNF2 Missense_Mutation p.R26Q 0.22 deleterious(0.04) benign(0.004) TCGA-EI-6917-01 1 185069003 185069003 G A RNF2 Missense_Mutation p.R273Q 0.29 tolerated(0.67) benign(0) TCGA-EI-6917-01 1 185143832 185143832 G T SWT1 Nonsense_Mutation p.E185* 0.23 TCGA-EI-6917-01 1 185144184 185144184 G A SWT1 Missense_Mutation p.R302Q 0.30 tolerated(0.58) benign(0.116) TCGA-EI-6917-01 1 185270283 185270283 A G IVNS1ABP Missense_Mutation p.V314A 0.20 tolerated(0.1) benign(0.05) TCGA-EI-6917-01 1 186086731 186086731 G A HMCN1 Missense_Mutation p.D3942N 0.27 possibly_damaging(0.517) TCGA-EI-6917-01 1 186270833 186270833 C A PRG4 Missense_Mutation p.F103L 0.26 probably_damaging(0.996) TCGA-EI-6917-01 1 186275944 186275944 G T PRG4 Nonsense_Mutation p.E365* 0.19 TCGA-EI-6917-01 1 186277699 186277699 G A PRG4 Missense_Mutation p.E950K 0.33 unknown(0) TCGA-EI-6917-01 1 186286681 186286681 C T TPR Silent p.P2291P 0.27 TCGA-EI-6917-01 1 186648219 186648219 C T PTGS2 Missense_Mutation p.R95Q 0.12 tolerated(0.11) benign(0.018) TCGA-EI-6917-01 1 18808308 18808308 C T KLHDC7A Missense_Mutation p.A278V 0.18 tolerated(0.32) benign(0) TCGA-EI-6917-01 1 190068002 190068002 C T BRINP3 Missense_Mutation p.D483N 0.14 tolerated(0.15) benign(0.238) TCGA-EI-6917-01 1 190250839 190250839 C T BRINP3 Missense_Mutation p.R93K 0.28 tolerated(0.25) benign(0.012) TCGA-EI-6917-01 1 19062164 19062164 G A PAX7 Silent p.P398P 0.32 TCGA-EI-6917-01 1 19175987 19175987 C T TAS1R2 Missense_Mutation p.D439N 0.22 tolerated(0.34) benign(0.177) TCGA-EI-6917-01 1 192998523 192998523 G A UCHL5 Silent p.F143F 0.24 TCGA-EI-6917-01 1 193044997 193044997 C A TROVE2 Missense_Mutation p.H210N 0.22 tolerated(0.13) benign(0.002) TCGA-EI-6917-01 1 193054102 193054102 G T TROVE2 3'UTR 0.24 TCGA-EI-6917-01 1 193104533 193104533 G T CDC73 Missense_Mutation p.S107I 0.23 deleterious(0.01) possibly_damaging(0.89) TCGA-EI-6917-01 1 193104712 193104712 G A CDC73 Missense_Mutation p.R139Q 0.19 deleterious(0.01) benign(0.084) TCGA-EI-6917-01 1 193111048 193111048 G T CDC73 Missense_Mutation p.R194I 0.21 deleterious(0) probably_damaging(0.954) TCGA-EI-6917-01 1 193149444 193149444 G A B3GALT2 Missense_Mutation p.R417C 0.17 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-EI-6917-01 1 193150491 193150491 G A B3GALT2 Missense_Mutation p.R68W 0.25 deleterious(0.02) possibly_damaging(0.874) TCGA-EI-6917-01 1 19431277 19431277 G A UBR4 Intron 0.33 TCGA-EI-6917-01 1 19455499 19455499 G A UBR4 Silent p.G2992G 0.27 TCGA-EI-6917-01 1 19547280 19547280 C T EMC1 Missense_Mutation p.E884K 0.30 deleterious(0.03) probably_damaging(0.977) TCGA-EI-6917-01 1 1956774 1956774 C G GABRD Silent p.G61G 0.27 TCGA-EI-6917-01 1 19570483 19570483 C T EMC1 Missense_Mutation p.A83T 0.25 tolerated(0.06) benign(0.111) TCGA-EI-6917-01 1 1960679 1960679 C T GABRD Missense_Mutation p.A274V 0.38 deleterious(0.03) benign(0.36) TCGA-EI-6917-01 1 196309604 196309604 G T KCNT2 Nonsense_Mutation p.C550* 0.24 TCGA-EI-6917-01 1 196367715 196367715 A G KCNT2 Silent p.N424N 0.16 TCGA-EI-6917-01 1 196654316 196654316 A C CFH Missense_Mutation p.N305H 0.32 deleterious(0.05) possibly_damaging(0.867) TCGA-EI-6917-01 1 196694262 196694262 G A CFH Missense_Mutation p.E570K 0.13 tolerated(0.79) benign(0.001) TCGA-EI-6917-01 1 196716258 196716258 C T CFH Nonsense_Mutation p.R1171* 0.25 TCGA-EI-6917-01 1 196743974 196743974 C T CFHR3 5'UTR 0.20 TCGA-EI-6917-01 1 197021848 197021848 C A F13B Missense_Mutation p.D491Y 0.23 tolerated(0.38) benign(0.036) TCGA-EI-6917-01 1 197024971 197024971 C T F13B Missense_Mutation p.G410R 0.25 tolerated(0.48) benign(0.135) TCGA-EI-6917-01 1 197069873 197069873 C A ASPM Missense_Mutation p.Q2836H 0.30 tolerated(0.14) benign(0.043) TCGA-EI-6917-01 1 197072347 197072347 C A ASPM Nonsense_Mutation p.E2012* 0.21 TCGA-EI-6917-01 1 197168527 197168527 T G ZBTB41 Missense_Mutation p.K359N 0.27 deleterious(0) possibly_damaging(0.878) TCGA-EI-6917-01 1 197390405 197390405 G A CRB1 Missense_Mutation p.A483T 0.18 tolerated(0.64) benign(0.002) TCGA-EI-6917-01 1 197396613 197396613 G T CRB1 Missense_Mutation p.D720Y 0.24 deleterious(0) possibly_damaging(0.907) TCGA-EI-6917-01 1 197876472 197876472 G A C1orf53 3'UTR 0.16 TCGA-EI-6917-01 1 198672476 198672476 C T PTPRC Silent p.S211S 0.25 TCGA-EI-6917-01 1 198723430 198723430 C T PTPRC Missense_Mutation p.A1181V 0.29 deleterious(0) probably_damaging(0.969) TCGA-EI-6917-01 1 198828061 198828061 G A MIR181B1 RNA 0.17 TCGA-EI-6917-01 1 200089994 200089994 A G NR5A2 Missense_Mutation p.H430R 0.25 tolerated(1) benign(0) TCGA-EI-6917-01 1 200523630 200523630 C T KIF14 Silent p.E1511E 0.27 TCGA-EI-6917-01 1 200817855 200817855 G A CAMSAP2 Missense_Mutation p.R653Q 0.22 tolerated(0.09) benign(0.02) TCGA-EI-6917-01 1 201013539 201013539 G A CACNA1S Missense_Mutation p.R1572C 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 201016348 201016348 C T CACNA1S Silent p.G1521G 0.35 TCGA-EI-6917-01 1 201047129 201047129 G A CACNA1S Silent p.F499F 0.30 TCGA-EI-6917-01 1 201162384 201162384 A G IGFN1 5'UTR 0.29 TCGA-EI-6917-01 1 201169470 201169470 C T IGFN1 Silent p.I188I 0.22 TCGA-EI-6917-01 1 201781642 201781642 C T NAV1 Missense_Mutation p.R1692C 0.14 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 201869419 201869419 C A LMOD1 Missense_Mutation p.R241I 0.28 benign(0.1) TCGA-EI-6917-01 1 202573729 202573729 C T SYT2 Missense_Mutation p.A67T 0.25 tolerated(0.28) possibly_damaging(0.499) TCGA-EI-6917-01 1 202702597 202702597 G A KDM5B Nonsense_Mutation p.R1281* 0.25 TCGA-EI-6917-01 1 202742292 202742292 C T KDM5B Missense_Mutation p.R177Q 0.17 deleterious(0) probably_damaging(0.968) TCGA-EI-6917-01 1 203311557 203311557 G A FMOD Missense_Mutation p.R349C 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 203317116 203317116 G A FMOD Missense_Mutation p.R95C 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 203671198 203671198 C T ATP2B4 Missense_Mutation p.R310C 0.25 deleterious(0.02) benign(0.019) TCGA-EI-6917-01 1 203680086 203680086 C T ATP2B4 Silent p.I627I 0.25 TCGA-EI-6917-01 1 203698767 203698767 G T ATP2B4 Intron 0.33 TCGA-EI-6917-01 1 203708691 203708691 G A ATP2B4 Silent p.A1109A 0.29 TCGA-EI-6917-01 1 203787701 203787701 G A ZC3H11A Missense_Mutation p.D20N 0.24 deleterious(0.05) possibly_damaging(0.781) TCGA-EI-6917-01 1 204103747 204103747 C T ETNK2 Intron 0.24 TCGA-EI-6917-01 1 204168239 204168239 G A GOLT1A Intron 0.25 TCGA-EI-6917-01 1 204518820 204518820 G A MDM4 3'UTR 0.27 TCGA-EI-6917-01 1 204923994 204923994 C T NFASC Silent p.V150V 0.14 TCGA-EI-6917-01 1 204943357 204943357 C A NFASC Missense_Mutation p.L444I 0.26 tolerated(0.16) possibly_damaging(0.474) TCGA-EI-6917-01 1 205041248 205041248 G A CNTN2 Silent p.T906T 0.22 TCGA-EI-6917-01 1 205052783 205052783 C A TMEM81 Missense_Mutation p.K222N 0.29 deleterious(0.03) possibly_damaging(0.544) TCGA-EI-6917-01 1 205492624 205492624 T C CDK18 Silent p.G48G 0.15 TCGA-EI-6917-01 1 205589595 205589595 C T ELK4 Silent p.T193T 0.24 TCGA-EI-6917-01 1 205688740 205688740 C T NUCKS1 Silent p.S149S 0.16 TCGA-EI-6917-01 1 205811006 205811006 C A PM20D1 Missense_Mutation p.R326I 0.30 deleterious(0.02) benign(0.392) TCGA-EI-6917-01 1 205819054 205819054 G A PM20D1 Silent p.V49V 0.18 TCGA-EI-6917-01 1 205888027 205888027 C T SLC26A9 Missense_Mutation p.A733T 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 205898361 205898361 G A SLC26A9 Missense_Mutation p.R281C 0.17 deleterious(0) probably_damaging(0.954) TCGA-EI-6917-01 1 206230826 206230826 T C AVPR1B Missense_Mutation p.F320S 0.31 deleterious(0) benign(0.199) TCGA-EI-6917-01 1 206320308 206320308 G A CTSE Missense_Mutation p.D151N 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 206650074 206650074 C T IKBKE Silent p.F198F 0.28 TCGA-EI-6917-01 1 206941988 206941988 C T IL10 Missense_Mutation p.R177Q 0.29 tolerated(0.13) benign(0) TCGA-EI-6917-01 1 206943230 206943230 G T IL10 Missense_Mutation p.L130I 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-EI-6917-01 1 207288807 207288807 G T C4BPA Missense_Mutation p.E125D 0.21 tolerated(0.27) benign(0.011) TCGA-EI-6917-01 1 207640078 207640078 C T CR2 Missense_Mutation p.S89F 0.20 deleterious(0.01) possibly_damaging(0.765) TCGA-EI-6917-01 1 207643339 207643339 G A CR2 Missense_Mutation p.D373N 0.22 deleterious(0) benign(0.168) TCGA-EI-6917-01 1 207741297 207741297 G A CR1 Missense_Mutation p.D1361N 0.24 tolerated(0.52) benign(0.002) TCGA-EI-6917-01 1 208062132 208062132 C A CD34 Missense_Mutation p.K289N 0.34 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 1 20879454 20879454 C T FAM43B 5'UTR 0.22 TCGA-EI-6917-01 1 209791286 209791286 C T LAMB3 Missense_Mutation p.R1006H 0.25 tolerated(0.33) benign(0.313) TCGA-EI-6917-01 1 209803117 209803117 C T LAMB3 Missense_Mutation p.R366Q 0.20 tolerated(0.67) benign(0.064) TCGA-EI-6917-01 1 209956246 209956246 C T C1orf74 Missense_Mutation p.R245Q 0.12 tolerated(0.33) benign(0.049) TCGA-EI-6917-01 1 210016997 210016997 G T DIEXF Missense_Mutation p.E661D 0.19 tolerated(0.4) benign(0.014) TCGA-EI-6917-01 1 21042009 21042009 C T KIF17 Missense_Mutation p.E119K 0.20 deleterious(0.02) possibly_damaging(0.681) TCGA-EI-6917-01 1 210857425 210857425 C T KCNH1 Missense_Mutation p.R723Q 0.22 tolerated(0.21) benign(0.02) TCGA-EI-6917-01 1 212860237 212860237 C T BATF3 Missense_Mutation p.A94T 0.29 tolerated(0.39) benign(0.006) TCGA-EI-6917-01 1 212911897 212911897 C A NSL1 Missense_Mutation p.E233D 0.26 tolerated(0.37) benign(0.006) TCGA-EI-6917-01 1 212988380 212988380 C A TATDN3 Missense_Mutation p.S243Y 0.27 tolerated(1) benign(0.013) TCGA-EI-6917-01 1 213414676 213414676 A C RPS6KC1 Missense_Mutation p.E619D 0.15 tolerated(0.26) benign(0.047) TCGA-EI-6917-01 1 214551346 214551346 C T PTPN14 Missense_Mutation p.E882K 0.14 tolerated(0.11) benign(0.004) TCGA-EI-6917-01 1 214794040 214794040 G A CENPF Missense_Mutation p.D206N 0.16 probably_damaging(0.959) TCGA-EI-6917-01 1 214814772 214814772 G A CENPF Missense_Mutation p.E1031K 0.28 probably_damaging(0.994) TCGA-EI-6917-01 1 214816310 214816310 G A CENPF Silent p.S1543S 0.24 TCGA-EI-6917-01 1 214830323 214830323 G T CENPF Nonsense_Mutation p.E2845* 0.21 TCGA-EI-6917-01 1 215777597 215777597 G A KCTD3 Missense_Mutation p.R421Q 0.48 tolerated(0.23) probably_damaging(0.996) TCGA-EI-6917-01 1 215785252 215785252 G A KCTD3 Silent p.S517S 0.22 TCGA-EI-6917-01 1 217604669 217604669 T C GPATCH2 Missense_Mutation p.N469D 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6917-01 1 218578555 218578555 C T TGFB2 Nonsense_Mutation p.R159* 0.35 TCGA-EI-6917-01 1 218578621 218578621 C T TGFB2 Missense_Mutation p.R181C 0.14 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 1 21887156 21887156 G A ALPL Silent p.A33A 0.15 TCGA-EI-6917-01 1 220142060 220142060 A C EPRS 3'UTR 0.33 TCGA-EI-6917-01 1 220315167 220315167 G T IARS2 Missense_Mutation p.D813Y 0.26 deleterious(0.03) probably_damaging(0.954) TCGA-EI-6917-01 1 22032231 22032231 T A USP48 Missense_Mutation p.E791D 0.22 tolerated(0.46) benign(0.25) TCGA-EI-6917-01 1 220387311 220387311 C T RAB3GAP2 Missense_Mutation p.G64E 0.24 tolerated(0.74) benign(0.002) TCGA-EI-6917-01 1 220440241 220440241 C A RAB3GAP2 Intron 0.22 TCGA-EI-6917-01 1 220826690 220826690 C T MARK1 Missense_Mutation p.R662C 0.33 deleterious(0) probably_damaging(0.972) TCGA-EI-6917-01 1 222732101 222732101 G T TAF1A Missense_Mutation p.F418L 0.24 tolerated(0.07) probably_damaging(0.919) TCGA-EI-6917-01 1 222802428 222802428 A C MIA3 Missense_Mutation p.L622F 0.23 tolerated(0.65) benign(0.074) TCGA-EI-6917-01 1 222903398 222903398 G T BROX Nonsense_Mutation p.E290* 0.19 TCGA-EI-6917-01 1 223177609 223177609 C T DISP1 Missense_Mutation p.S957L 0.20 tolerated(0.38) benign(0.426) TCGA-EI-6917-01 1 223283688 223283689 - A TLR5 3'UTR 0.23 TCGA-EI-6917-01 1 223284192 223284192 A G TLR5 Missense_Mutation p.C728R 0.17 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 223807137 223807137 G A CAPN8 Silent p.F330F 0.21 TCGA-EI-6917-01 1 223934750 223934750 C T CAPN2 Silent p.F204F 0.56 TCGA-EI-6917-01 1 225142764 225142764 A G DNAH14 Missense_Mutation p.T61A 0.27 tolerated(0.32) benign(0.002) TCGA-EI-6917-01 1 225155250 225155250 G T DNAH14 Nonsense_Mutation p.E206* 0.27 TCGA-EI-6917-01 1 225239274 225239274 C A DNAH14 Missense_Mutation p.S705Y 0.33 tolerated(0.87) possibly_damaging(0.608) TCGA-EI-6917-01 1 225306929 225306929 C T DNAH14 Missense_Mutation p.R445C 0.32 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 1 225459710 225459710 C A DNAH14 Missense_Mutation p.R2586S 0.23 benign(0.011) TCGA-EI-6917-01 1 225521107 225521107 C T DNAH14 Missense_Mutation p.R3234C 0.31 probably_damaging(1) TCGA-EI-6917-01 1 225599097 225599097 C T LBR Missense_Mutation p.R377Q 0.21 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 1 226822475 226822475 T C ITPKB Missense_Mutation p.D913G 0.27 tolerated(0.05) benign(0.437) TCGA-EI-6917-01 1 226836471 226836471 C T ITPKB Missense_Mutation p.S645N 0.24 tolerated(0.06) possibly_damaging(0.476) TCGA-EI-6917-01 1 227083199 227083199 C T PSEN2 Silent p.F422F 0.21 TCGA-EI-6917-01 1 227171928 227171928 C T ADCK3 Missense_Mutation p.R464W 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 1 227333279 227333279 G A CDC42BPA Missense_Mutation p.R352W 0.24 deleterious(0) probably_damaging(0.955) TCGA-EI-6917-01 1 228400246 228400246 C T OBSCN Silent p.H254H 0.30 TCGA-EI-6917-01 1 228537706 228537706 C T OBSCN Silent p.F7045F 0.28 TCGA-EI-6917-01 1 228584366 228584366 T C TRIM11 Intron 0.26 TCGA-EI-6917-01 1 228612801 228612801 C T HIST3H3 Missense_Mutation p.A76T 0.18 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-EI-6917-01 1 229584914 229584914 A G NUP133 Silent p.D1068D 0.26 TCGA-EI-6917-01 1 229601169 229601169 G A NUP133 Missense_Mutation p.T766M 0.18 tolerated(0.05) probably_damaging(0.996) TCGA-EI-6917-01 1 229768021 229768021 A G URB2 Silent p.L44L 0.31 TCGA-EI-6917-01 1 229773386 229773386 T C URB2 Missense_Mutation p.M1009T 0.19 deleterious(0) benign(0.107) TCGA-EI-6917-01 1 230805179 230805179 C T COG2 Silent p.V224V 0.20 TCGA-EI-6917-01 1 231125878 231125878 T G ARV1 Missense_Mutation p.F106C 0.21 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 1 231472330 231472330 G A EXOC8 Nonsense_Mutation p.R388* 0.36 TCGA-EI-6917-01 1 231472627 231472627 G A EXOC8 Nonsense_Mutation p.R289* 0.26 TCGA-EI-6917-01 1 231935902 231935902 G A DISC1 Missense_Mutation p.D580N 0.27 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 1 232650179 232650179 C T SIPA1L2 Missense_Mutation p.E303K 0.32 tolerated(0.06) possibly_damaging(0.679) TCGA-EI-6917-01 1 232650584 232650584 C A SIPA1L2 Missense_Mutation p.D168Y 0.47 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 2328642 2328642 C T RER1 Nonsense_Mutation p.R57* 0.22 TCGA-EI-6917-01 1 232942357 232942357 C T MAP10 Nonsense_Mutation p.R530* 0.26 TCGA-EI-6917-01 1 232944053 232944053 G T MAP10 3'UTR 0.22 TCGA-EI-6917-01 1 232944145 232944145 C A MAP10 3'UTR 0.15 TCGA-EI-6917-01 1 232945181 232945181 G T MAP10 3'UTR 0.22 TCGA-EI-6917-01 1 232945919 232945919 C T MAP10 3'UTR 0.27 TCGA-EI-6917-01 1 233482334 233482334 T C MLK4 Missense_Mutation p.S318P 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-EI-6917-01 1 233498022 233498022 G A MLK4 Missense_Mutation p.R512Q 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6917-01 1 233518260 233518260 G A MLK4 Missense_Mutation p.A972T 0.18 tolerated(0.27) benign(0.002) TCGA-EI-6917-01 1 23382485 23382485 G A KDM1A Missense_Mutation p.R315Q 0.30 tolerated(0.46) benign(0.223) TCGA-EI-6917-01 1 23408001 23408001 G A KDM1A Missense_Mutation p.D745N 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-EI-6917-01 1 23521209 23521209 G A HTR1D 5'UTR 0.17 TCGA-EI-6917-01 1 235884202 235884202 G A LYST Missense_Mutation p.R3107C 0.30 deleterious(0) possibly_damaging(0.684) TCGA-EI-6917-01 1 235897967 235897967 A C LYST Intron 0.37 TCGA-EI-6917-01 1 235929404 235929404 C T LYST Silent p.T2032T 0.26 TCGA-EI-6917-01 1 235969959 235969959 C T LYST Missense_Mutation p.S826N 0.20 tolerated(0.16) benign(0.003) TCGA-EI-6917-01 1 236590733 236590733 T G EDARADD Missense_Mutation p.S68A 0.21 tolerated(0.13) benign(0.003) TCGA-EI-6917-01 1 237024489 237024489 G A MTR Missense_Mutation p.R703Q 0.24 deleterious(0.02) possibly_damaging(0.871) TCGA-EI-6917-01 1 23707817 23707817 G T TCEA3 3'UTR 0.17 TCGA-EI-6917-01 1 237617860 237617860 C A RYR2 Missense_Mutation p.L488I 0.24 benign(0.339) TCGA-EI-6917-01 1 237870511 237870511 G A RYR2 Silent p.L3281L 0.14 TCGA-EI-6917-01 1 237872302 237872302 C T RYR2 Missense_Mutation p.S3349L 0.21 possibly_damaging(0.615) TCGA-EI-6917-01 1 238046122 238046122 G A ZP4 Missense_Mutation p.S472F 0.23 tolerated(1) benign(0.001) TCGA-EI-6917-01 1 238090804 238090804 C T RP11-193H5.1 RNA 0.33 TCGA-EI-6917-01 1 240070862 240070862 C T CHRM3 Silent p.F37F 0.22 TCGA-EI-6917-01 1 240071417 240071417 C A CHRM3 Missense_Mutation p.F222L 0.25 tolerated(0.18) benign(0.119) TCGA-EI-6917-01 1 240372011 240372011 G T FMN2 Missense_Mutation p.R1300M 0.23 probably_damaging(0.999) TCGA-EI-6917-01 1 241752099 241752099 G A KMO Silent p.A355A 0.32 TCGA-EI-6917-01 1 241753391 241753391 G A KMO Silent p.S392S 0.25 TCGA-EI-6917-01 1 241958535 241958535 C T WDR64 Silent p.F998F 0.29 TCGA-EI-6917-01 1 242264009 242264009 G A PLD5 Missense_Mutation p.R439C 0.20 deleterious(0) probably_damaging(0.927) TCGA-EI-6917-01 1 243668558 243668558 C T AKT3 Missense_Mutation p.R478Q 0.23 tolerated_low_confidence(0.11) benign(0.004) TCGA-EI-6917-01 1 244218531 244218531 G A ZBTB18 Silent p.T485T 0.27 TCGA-EI-6917-01 1 244218559 244218559 C T ZBTB18 Missense_Mutation p.R495C 0.20 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 1 244219018 244219019 - T ZBTB18 3'UTR 0.18 TCGA-EI-6917-01 1 244852628 244852628 G T DESI2 Nonsense_Mutation p.E65* 0.11 TCGA-EI-6917-01 1 245849075 245849075 G A KIF26B Silent p.Q930Q 0.28 TCGA-EI-6917-01 1 245862293 245862293 G A KIF26B Silent p.A2044A 0.23 TCGA-EI-6917-01 1 246943740 246943740 G A RP11-439E19.10 3'Flank 0.34 TCGA-EI-6917-01 1 24696312 24696312 C T STPG1 Missense_Mutation p.E197K 0.17 deleterious(0.01) possibly_damaging(0.815) TCGA-EI-6917-01 1 247013528 247013528 T C AHCTF1 Missense_Mutation p.D1936G 0.33 tolerated(0.1) benign(0.009) TCGA-EI-6917-01 1 247582274 247582274 G A NLRP3 Missense_Mutation p.D60N 0.25 tolerated(0.32) possibly_damaging(0.776) TCGA-EI-6917-01 1 247614449 247614449 G T OR2B11 Missense_Mutation p.S279Y 0.37 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 24768614 24768614 C T NIPAL3 Silent p.L78L 0.31 TCGA-EI-6917-01 1 247875181 247875181 G A OR6F1 Missense_Mutation p.R293C 0.25 deleterious(0.01) benign(0.181) TCGA-EI-6917-01 1 247902402 247902402 C T OR14K1 Silent p.F162F 0.23 TCGA-EI-6917-01 1 248112410 248112410 T G OR2L8 Missense_Mutation p.F84C 0.26 deleterious(0) probably_damaging(0.962) TCGA-EI-6917-01 1 248202363 248202363 G A OR2L2 Missense_Mutation p.R265Q 0.23 tolerated(0.08) benign(0.089) TCGA-EI-6917-01 1 248224777 248224777 G A OR2L3 Missense_Mutation p.R265Q 0.42 tolerated(0.07) benign(0.056) TCGA-EI-6917-01 1 248262683 248262683 G T OR2L13 Missense_Mutation p.E2D 0.29 tolerated(0.1) benign(0.024) TCGA-EI-6917-01 1 248263085 248263085 T C OR2L13 Silent p.S136S 0.23 TCGA-EI-6917-01 1 248263486 248263486 A T OR2L13 Missense_Mutation p.D270V 0.19 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 1 248309232 248309232 G A OR2M5 Silent p.R261R 0.28 TCGA-EI-6917-01 1 248309245 248309245 C T OR2M5 Missense_Mutation p.R266C 0.23 deleterious(0.03) benign(0.032) TCGA-EI-6917-01 1 248512601 248512601 C A OR14C36 Missense_Mutation p.F175L 0.27 tolerated(0.07) benign(0.162) TCGA-EI-6917-01 1 248525369 248525369 C T OR2T4 Missense_Mutation p.R163C 0.18 deleterious(0.01) benign(0.014) TCGA-EI-6917-01 1 248551185 248551185 C T OR2T6 Silent p.I92I 0.09 TCGA-EI-6917-01 1 248569366 248569366 C T OR2T1 Missense_Mutation p.S24L 0.24 tolerated_low_confidence(1) benign(0) TCGA-EI-6917-01 1 248790391 248790391 C T OR2T11 Silent p.G13G 0.73 TCGA-EI-6917-01 1 248844932 248844932 C A OR14I1 Missense_Mutation p.R225I 0.10 deleterious(0) probably_damaging(0.928) TCGA-EI-6917-01 1 25166403 25166403 T G CLIC4 Missense_Mutation p.N156K 0.39 tolerated(0.29) benign(0.003) TCGA-EI-6917-01 1 25167432 25167432 C T CLIC4 3'UTR 0.34 TCGA-EI-6917-01 1 25229044 25229044 C G RUNX3 Missense_Mutation p.A287P 0.27 tolerated(0.47) benign(0.015) TCGA-EI-6917-01 1 2526775 2526775 G A MMEL1 Silent p.I508I 0.18 TCGA-EI-6917-01 1 25599144 25599144 G A RHD Missense_Mutation p.A36T 0.25 tolerated(0.78) benign(0.016) TCGA-EI-6917-01 1 25655547 25655547 G T RHD 3'UTR 0.57 TCGA-EI-6917-01 1 25812216 25812216 G A TMEM57 Missense_Mutation p.E476K 0.32 tolerated(0.23) benign(0.24) TCGA-EI-6917-01 1 26140411 26140411 C T SEPN1 Missense_Mutation p.S476L 0.36 tolerated(0.08) benign(0.304) TCGA-EI-6917-01 1 26361725 26361725 G A EXTL1 Missense_Mutation p.A640T 0.30 tolerated(0.2) benign(0.078) TCGA-EI-6917-01 1 26586239 26586239 G A CEP85 Silent p.S429S 0.21 TCGA-EI-6917-01 1 26691533 26691533 G A ZNF683 Silent p.S168S 0.24 TCGA-EI-6917-01 1 27106354 27106354 C T ARID1A Nonsense_Mutation p.R1989* 0.21 TCGA-EI-6917-01 1 27429731 27429731 C T SLC9A1 Missense_Mutation p.E520K 0.21 deleterious(0.01) probably_damaging(0.955) TCGA-EI-6917-01 1 27697358 27697358 T G FCN3 Missense_Mutation p.N167H 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-EI-6917-01 1 29379709 29379709 C T EPB41 Missense_Mutation p.A577V 0.24 tolerated(0.25) benign(0.04) TCGA-EI-6917-01 1 29391630 29391630 G A EPB41 Missense_Mutation p.R715Q 0.26 tolerated(0.11) probably_damaging(0.998) TCGA-EI-6917-01 1 29642581 29642581 T C PTPRU Missense_Mutation p.V1154A 0.16 tolerated(0.89) benign(0.006) TCGA-EI-6917-01 1 29651734 29651734 G A PTPRU Missense_Mutation p.A1392T 0.22 deleterious(0) possibly_damaging(0.901) TCGA-EI-6917-01 1 31189096 31189096 C A MATN1 Missense_Mutation p.E289D 0.18 tolerated(0.17) possibly_damaging(0.555) TCGA-EI-6917-01 1 31347355 31347355 G A SDC3 Silent p.F317F 0.25 TCGA-EI-6917-01 1 31810034 31810034 G A ZCCHC17 Missense_Mutation p.R46Q 0.20 tolerated(0.28) benign(0.055) TCGA-EI-6917-01 1 32201935 32201935 C T BAI2 Missense_Mutation p.G1063S 0.23 tolerated(0.21) probably_damaging(1) TCGA-EI-6917-01 1 32221967 32221967 G A BAI2 Silent p.F157F 0.33 TCGA-EI-6917-01 1 32381555 32381555 G A PTP4A2 Nonsense_Mutation p.R44* 0.26 TCGA-EI-6917-01 1 32557606 32557606 C T TMEM39B Silent p.F307F 0.32 TCGA-EI-6917-01 1 32741000 32741000 G A LCK Silent p.A119A 0.25 TCGA-EI-6917-01 1 33944928 33944928 G A ZSCAN20 Silent p.P13P 0.30 TCGA-EI-6917-01 1 33960217 33960217 G T ZSCAN20 Missense_Mutation p.R758I 0.18 deleterious(0) probably_damaging(0.978) TCGA-EI-6917-01 1 34002635 34002635 G T CSMD2 Missense_Mutation p.S3145Y 0.36 deleterious(0.04) probably_damaging(0.976) TCGA-EI-6917-01 1 34015846 34015846 G T CSMD2 Missense_Mutation p.L2806M 0.29 tolerated(0.22) possibly_damaging(0.497) TCGA-EI-6917-01 1 34276455 34276455 A G CSMD2 Silent p.C405C 0.31 TCGA-EI-6917-01 1 34291346 34291346 C T CSMD2 Missense_Mutation p.G315S 0.35 tolerated(0.08) possibly_damaging(0.782) TCGA-EI-6917-01 1 3432020 3432020 G A MEGF6 Missense_Mutation p.R226C 0.15 deleterious(0) probably_damaging(0.959) TCGA-EI-6917-01 1 34330337 34330337 G T HMGB4 Missense_Mutation p.R182I 0.20 deleterious(0.03) benign(0.308) TCGA-EI-6917-01 1 35260251 35260251 G A GJA4 Missense_Mutation p.R146H 0.26 tolerated(0.06) possibly_damaging(0.542) TCGA-EI-6917-01 1 35260283 35260283 G A GJA4 Missense_Mutation p.A157T 0.30 tolerated(0.29) benign(0.003) TCGA-EI-6917-01 1 3544084 3544084 G A TPRG1L Missense_Mutation p.R164Q 0.17 deleterious(0.05) probably_damaging(0.954) TCGA-EI-6917-01 1 35579749 35579749 C T ZMYM1 Missense_Mutation p.S773F 0.25 deleterious(0) benign(0.419) TCGA-EI-6917-01 1 35824801 35824801 G T ZMYM4 Nonsense_Mutation p.E121* 0.27 TCGA-EI-6917-01 1 35864479 35864479 T C ZMYM4 Missense_Mutation p.Y1090H 0.11 deleterious(0.04) probably_damaging(0.98) TCGA-EI-6917-01 1 36101916 36101916 C T PSMB2 Missense_Mutation p.R70Q 0.24 deleterious(0) benign(0.379) TCGA-EI-6917-01 1 36292388 36292388 G A AGO4 Missense_Mutation p.R267Q 0.27 deleterious(0) possibly_damaging(0.458) TCGA-EI-6917-01 1 36354152 36354152 C T AGO1 Silent p.I50I 0.19 TCGA-EI-6917-01 1 36563365 36563365 C A COL8A2 Missense_Mutation p.K639N 0.12 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 1 36636902 36636902 C G MAP7D1 Missense_Mutation p.P126R 0.29 possibly_damaging(0.899) TCGA-EI-6917-01 1 3672121 3672121 G A CCDC27 Silent p.T181T 0.18 TCGA-EI-6917-01 1 36754685 36754685 G T THRAP3 Missense_Mutation p.E355D 0.29 deleterious(0.01) benign(0.006) TCGA-EI-6917-01 1 37307481 37307481 G A GRIK3 Silent p.F462F 0.29 TCGA-EI-6917-01 1 3753214 3753214 G A CEP104 Missense_Mutation p.R388C 0.27 tolerated(0.17) benign(0.031) TCGA-EI-6917-01 1 3765182 3765182 G A CEP104 Nonsense_Mutation p.R93* 0.29 TCGA-EI-6917-01 1 3765296 3765296 G A CEP104 Nonsense_Mutation p.R55* 0.33 TCGA-EI-6917-01 1 38328075 38328075 C T INPP5B Missense_Mutation p.R885Q 0.30 deleterious(0) probably_damaging(0.969) TCGA-EI-6917-01 1 38334189 38334189 C T INPP5B Missense_Mutation p.R762Q 0.33 deleterious(0.04) benign(0.082) TCGA-EI-6917-01 1 38483285 38483285 T A UTP11L Intron 0.31 TCGA-EI-6917-01 1 39332608 39332608 C T MYCBP Missense_Mutation p.E71K 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-EI-6917-01 1 39352176 39352176 T C RHBDL2 Nonstop_Mutation p.*304Wext*17 0.26 TCGA-EI-6917-01 1 39788291 39788291 G A MACF1 Silent p.L1352L 0.14 TCGA-EI-6917-01 1 39797908 39797908 G A MACF1 Intron 0.20 TCGA-EI-6917-01 1 39798016 39798016 C T MACF1 Intron 0.19 TCGA-EI-6917-01 1 39799746 39799746 C T MACF1 Intron 0.23 TCGA-EI-6917-01 1 40092350 40092350 G A HEYL Silent p.I272I 0.32 TCGA-EI-6917-01 1 40131256 40131256 C T NT5C1A Missense_Mutation p.V124I 0.17 tolerated(0.31) possibly_damaging(0.905) TCGA-EI-6917-01 1 40235704 40235704 C T OXCT2 Silent p.A408A 0.15 TCGA-EI-6917-01 1 40422762 40422762 G T MFSD2A Nonsense_Mutation p.E33* 0.21 TCGA-EI-6917-01 1 40702139 40702139 A C RLF Missense_Mutation p.K589Q 0.32 tolerated(0.12) possibly_damaging(0.762) TCGA-EI-6917-01 1 40705576 40705576 G A RLF Silent p.G1734G 0.18 TCGA-EI-6917-01 1 40706184 40706184 G A RLF 3'UTR 0.22 TCGA-EI-6917-01 1 40747179 40747179 G T ZMPSTE24 Nonsense_Mutation p.E312* 0.27 TCGA-EI-6917-01 1 40981636 40981636 C A EXO5 3'UTR 0.32 TCGA-EI-6917-01 1 41215348 41215348 G A NFYC Missense_Mutation p.R94Q 0.19 deleterious(0.04) probably_damaging(0.993) TCGA-EI-6917-01 1 41984135 41984135 G A HIVEP3 Missense_Mutation p.S1803L 0.10 probably_damaging(0.996) TCGA-EI-6917-01 1 42045974 42045974 G A HIVEP3 Silent p.L1499L 0.28 TCGA-EI-6917-01 1 42047744 42047744 G A HIVEP3 Missense_Mutation p.R909C 0.15 probably_damaging(0.998) TCGA-EI-6917-01 1 43004960 43004960 G T CCDC30 Missense_Mutation p.E78D 0.35 tolerated(0.17) possibly_damaging(0.884) TCGA-EI-6917-01 1 43042747 43042747 C T CCDC30 Silent p.C304C 0.25 TCGA-EI-6917-01 1 43111874 43111874 G T CCDC30 Missense_Mutation p.K653N 0.29 tolerated(0.42) benign(0.002) TCGA-EI-6917-01 1 43308309 43308309 C A ERMAP Missense_Mutation p.F278L 0.22 tolerated(0.07) probably_damaging(0.977) TCGA-EI-6917-01 1 43630093 43630093 C A EBNA1BP2 3'UTR 0.22 TCGA-EI-6917-01 1 43647494 43647494 C T WDR65 Silent p.I149I 0.13 TCGA-EI-6917-01 1 43851887 43851887 C T MED8 Silent p.P168P 0.27 TCGA-EI-6917-01 1 44595062 44595062 C A KLF17 Nonsense_Mutation p.S40* 0.23 TCGA-EI-6917-01 1 45101201 45101201 C T RNF220 Intron 0.28 TCGA-EI-6917-01 1 45221892 45221892 G A KIF2C Silent p.S320S 0.27 TCGA-EI-6917-01 1 45323437 45323437 G A EIF2B3 Silent p.I415I 0.22 TCGA-EI-6917-01 1 45797721 45797721 G A MUTYH Missense_Mutation p.S321L 0.19 tolerated(0.59) benign(0) TCGA-EI-6917-01 1 45923328 45923328 G A TESK2 Nonsense_Mutation p.R44* 0.22 TCGA-EI-6917-01 1 46080686 46080686 A C NASP Missense_Mutation p.E556D 0.19 deleterious(0.04) possibly_damaging(0.669) TCGA-EI-6917-01 1 46159343 46159343 C A TMEM69 Missense_Mutation p.F170L 0.23 tolerated(1) benign(0.001) TCGA-EI-6917-01 1 46509241 46509241 C A PIK3R3 3'UTR 0.27 TCGA-EI-6917-01 1 46527650 46527650 C A PIK3R3 Nonsense_Mutation p.E239* 0.22 TCGA-EI-6917-01 1 46669069 46669069 T C LURAP1 5'UTR 0.29 TCGA-EI-6917-01 1 46739369 46739369 G A RAD54L Silent p.S520S 0.22 TCGA-EI-6917-01 1 46775975 46775975 C T UQCRH Missense_Mutation p.A77V 0.17 deleterious(0.01) possibly_damaging(0.887) TCGA-EI-6917-01 1 46827422 46827422 T C NSUN4 Silent p.C353C 0.24 TCGA-EI-6917-01 1 46827633 46827633 C T NSUN4 3'UTR 0.20 TCGA-EI-6917-01 1 47735500 47735500 C T STIL Missense_Mutation p.E808K 0.23 tolerated(0.13) benign(0.082) TCGA-EI-6917-01 1 51946959 51946959 T G EPS15 Missense_Mutation p.K21Q 0.26 deleterious(0.02) probably_damaging(0.967) TCGA-EI-6917-01 1 52279745 52279745 G A NRD1 Missense_Mutation p.R614W 0.19 deleterious(0) possibly_damaging(0.901) TCGA-EI-6917-01 1 52703944 52703944 G T ZFYVE9 Missense_Mutation p.E285D 0.38 tolerated_low_confidence(0.11) benign(0.007) TCGA-EI-6917-01 1 52991900 52991900 A G ZCCHC11 Missense_Mutation p.V18A 0.23 tolerated_low_confidence(0.21) benign(0.002) TCGA-EI-6917-01 1 53236855 53236855 G A ZYG11B Silent p.T120T 0.24 TCGA-EI-6917-01 1 53352637 53352637 G T ZYG11A Missense_Mutation p.K672N 0.32 tolerated(0.51) benign(0.051) TCGA-EI-6917-01 1 53580505 53580505 G A SLC1A7 Missense_Mutation p.A119V 0.24 tolerated(0.08) benign(0.114) TCGA-EI-6917-01 1 53741319 53741319 T G LRP8 Missense_Mutation p.E330D 0.33 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 53927149 53927149 G A DMRTB1 Missense_Mutation p.R194H 0.20 tolerated(0.57) benign(0.001) TCGA-EI-6917-01 1 54238156 54238156 C T NDC1 Missense_Mutation p.D603N 0.29 deleterious(0) possibly_damaging(0.449) TCGA-EI-6917-01 1 54512963 54512963 C T TMEM59 Missense_Mutation p.R91Q 0.15 tolerated(0.57) benign(0.033) TCGA-EI-6917-01 1 55118989 55118989 C T MROH7 Silent p.S130S 0.24 TCGA-EI-6917-01 1 55168354 55168354 G T MROH7 Missense_Mutation p.R1167I 0.15 deleterious(0.02) possibly_damaging(0.509) TCGA-EI-6917-01 1 55611704 55611704 G T USP24 Missense_Mutation p.L777I 0.17 deleterious(0.01) probably_damaging(0.938) TCGA-EI-6917-01 1 55622943 55622943 G A USP24 Missense_Mutation p.S443L 0.22 tolerated(0.07) probably_damaging(0.914) TCGA-EI-6917-01 1 57216742 57216742 C T C1orf168 Silent p.K454K 0.31 TCGA-EI-6917-01 1 57351830 57351830 G T C8A Missense_Mutation p.M362I 0.26 deleterious(0.03) possibly_damaging(0.838) TCGA-EI-6917-01 1 58939607 58939607 C A OMA1 Nonsense_Mutation p.E309* 0.32 TCGA-EI-6917-01 1 59002358 59002358 C A OMA1 Nonsense_Mutation p.E186* 0.26 TCGA-EI-6917-01 1 59041866 59041866 C T TACSTD2 Silent p.P321P 0.27 TCGA-EI-6917-01 1 59131245 59131245 C T MYSM1 Missense_Mutation p.R697Q 0.23 tolerated(0.35) benign(0.006) TCGA-EI-6917-01 1 59147659 59147659 T G MYSM1 Missense_Mutation p.N353H 0.29 tolerated(0.16) benign(0.003) TCGA-EI-6917-01 1 59165688 59165688 C T MYSM1 Missense_Mutation p.D13N 0.22 deleterious(0.01) possibly_damaging(0.791) TCGA-EI-6917-01 1 60324148 60324148 C T HOOK1 Nonsense_Mutation p.R431* 0.27 TCGA-EI-6917-01 1 60330911 60330911 C A HOOK1 Missense_Mutation p.Q580K 0.26 tolerated(0.17) benign(0.229) TCGA-EI-6917-01 1 60491156 60491156 A G C1orf87 Silent p.C348C 0.31 TCGA-EI-6917-01 1 60505744 60505744 G T C1orf87 Missense_Mutation p.L198I 0.16 tolerated(0.1) benign(0.039) TCGA-EI-6917-01 1 61553986 61553986 C A NFIA Missense_Mutation p.P110T 0.23 tolerated(0.09) probably_damaging(0.933) TCGA-EI-6917-01 1 6172981 6172981 C T CHD5 Missense_Mutation p.E1664K 0.61 tolerated(0.4) benign(0.001) TCGA-EI-6917-01 1 61818240 61818240 G A NFIA Splice_Site p.X318_splice 0.15 TCGA-EI-6917-01 1 61892174 61892174 C T NFIA Silent p.F531F 0.24 TCGA-EI-6917-01 1 6292009 6292009 G A ICMT Missense_Mutation p.R209W 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 63018492 63018492 G T DOCK7 Missense_Mutation p.R893S 0.28 tolerated(0.2) benign(0.065) TCGA-EI-6917-01 1 63024827 63024827 C T DOCK7 Missense_Mutation p.R755Q 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-EI-6917-01 1 64515391 64515391 G T ROR1 Missense_Mutation p.M64I 0.27 tolerated(0.06) possibly_damaging(0.472) TCGA-EI-6917-01 1 64643614 64643614 G T ROR1 Missense_Mutation p.K630N 0.16 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 65157273 65157273 G A CACHD1 3'UTR 0.27 TCGA-EI-6917-01 1 65305289 65305289 C T JAK1 Missense_Mutation p.D947N 0.36 tolerated(0.38) possibly_damaging(0.676) TCGA-EI-6917-01 1 6533181 6533181 G A PLEKHG5 Silent p.F362F 0.26 TCGA-EI-6917-01 1 65332714 65332714 T G JAK1 Missense_Mutation p.E275D 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 1 65831836 65831836 A C DNAJC6 Missense_Mutation p.N167T 0.22 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 65851583 65851583 G A DNAJC6 Missense_Mutation p.R330Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6917-01 1 65860702 65860702 G A DNAJC6 Silent p.S675S 0.26 TCGA-EI-6917-01 1 6601919 6601919 G T NOL9 Missense_Mutation p.S349Y 0.27 deleterious(0) probably_damaging(0.926) TCGA-EI-6917-01 1 6605113 6605113 A G NOL9 Missense_Mutation p.V291A 0.19 tolerated(0.72) benign(0.005) TCGA-EI-6917-01 1 66075661 66075661 C A LEPR Missense_Mutation p.S595Y 0.20 tolerated(0.07) benign(0.027) TCGA-EI-6917-01 1 66798062 66798062 G A PDE4B Intron 0.31 TCGA-EI-6917-01 1 66834477 66834477 G A PDE4B Missense_Mutation p.R557H 0.18 deleterious(0) probably_damaging(0.971) TCGA-EI-6917-01 1 67263763 67263763 C A INSL5 Missense_Mutation p.R114I 0.24 deleterious(0.01) probably_damaging(0.925) TCGA-EI-6917-01 1 67685263 67685263 G T IL23R Nonsense_Mutation p.E269* 0.21 TCGA-EI-6917-01 1 69591 69591 C T OR4F5 Silent p.V167V 0.48 TCGA-EI-6917-01 1 70226020 70226020 G A LRRC7 Missense_Mutation p.E45K 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 1 70339239 70339239 C T LRRC7 Intron 0.23 TCGA-EI-6917-01 1 70493968 70493968 T G LRRC7 Missense_Mutation p.S599A 0.20 tolerated(0.13) benign(0.003) TCGA-EI-6917-01 1 70504702 70504702 C A LRRC7 Silent p.V1027V 0.21 TCGA-EI-6917-01 1 70616871 70616871 G A LRRC40 Missense_Mutation p.S486F 0.29 deleterious(0.01) probably_damaging(0.918) TCGA-EI-6917-01 1 70710440 70710440 C T SRSF11 Missense_Mutation p.R292W 0.15 deleterious(0) unknown(0) TCGA-EI-6917-01 1 70904442 70904442 G A CTH Missense_Mutation p.R375Q 0.09 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 74621446 74621446 T C LRRIQ3 Missense_Mutation p.I226M 0.27 deleterious(0) possibly_damaging(0.838) TCGA-EI-6917-01 1 75009600 75009600 C T TNNI3K Silent p.S915S 0.11 TCGA-EI-6917-01 1 75229720 75229720 G T TYW3 Nonsense_Mutation p.E235* 0.33 TCGA-EI-6917-01 1 76199306 76199306 C T ACADM Missense_Mutation p.S131F 0.26 tolerated(0.21) benign(0.249) TCGA-EI-6917-01 1 77510030 77510030 G A ST6GALNAC5 Missense_Mutation p.V135M 0.25 probably_damaging(1) TCGA-EI-6917-01 1 77984314 77984314 C A AK5 Missense_Mutation p.L405I 0.27 tolerated(0.24) possibly_damaging(0.697) TCGA-EI-6917-01 1 78098421 78098421 C A ZZZ3 Missense_Mutation p.D207Y 0.23 deleterious(0.01) possibly_damaging(0.526) TCGA-EI-6917-01 1 78162938 78162938 C T USP33 3'UTR 0.16 TCGA-EI-6917-01 1 78395182 78395182 G T NEXN Missense_Mutation p.R349I 0.31 deleterious(0) benign(0.003) TCGA-EI-6917-01 1 78963588 78963588 G T PTGFR Intron 0.24 TCGA-EI-6917-01 1 79094656 79094656 G A IFI44L Missense_Mutation p.D167N 0.25 tolerated(0.69) benign(0.001) TCGA-EI-6917-01 1 82447592 82447592 C T LPHN2 Missense_Mutation p.L1055F 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 1 84385515 84385515 C T TTLL7 Missense_Mutation p.R456Q 0.21 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 84961586 84961586 G A RPF1 Missense_Mutation p.E241K 0.27 tolerated(0.23) benign(0.014) TCGA-EI-6917-01 1 84961658 84961659 TC - RPF1 Frame_Shift_Del p.F267Sfs*3 0.21 TCGA-EI-6917-01 1 85403443 85403443 C A MCOLN2 Missense_Mutation p.D444Y 0.26 deleterious(0.03) possibly_damaging(0.863) TCGA-EI-6917-01 1 85486764 85486764 C T MCOLN3 Missense_Mutation p.E506K 0.20 deleterious(0.01) probably_damaging(0.937) TCGA-EI-6917-01 1 85587440 85587440 G A WDR63 Missense_Mutation p.E642K 0.35 deleterious(0.02) possibly_damaging(0.842) TCGA-EI-6917-01 1 85595745 85595745 C T WDR63 Missense_Mutation p.R828C 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 1 85656195 85656195 G T SYDE2 Missense_Mutation p.S329Y 0.20 deleterious_low_confidence(0.01) benign(0.332) TCGA-EI-6917-01 1 86173379 86173379 T C ZNHIT6 Missense_Mutation p.T197A 0.20 tolerated_low_confidence(0.38) benign(0.004) TCGA-EI-6917-01 1 86959980 86959980 G A CLCA1 Silent p.T597T 0.23 TCGA-EI-6917-01 1 886586 886586 C T NOC2L Missense_Mutation p.R455Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 1 89271680 89271680 G T PKN2 Missense_Mutation p.V595F 0.26 tolerated(0.07) benign(0.001) TCGA-EI-6917-01 1 89325870 89325870 C A GTF2B Nonsense_Mutation p.E120* 0.26 TCGA-EI-6917-01 1 89408715 89408715 C A CCBL2 Missense_Mutation p.E425D 0.28 tolerated(0.54) probably_damaging(0.999) TCGA-EI-6917-01 1 89480969 89480969 C T GBP3 Splice_Site p.X106_splice 0.29 TCGA-EI-6917-01 1 89521783 89521783 C T GBP1 Silent p.S428S 0.26 TCGA-EI-6917-01 1 89834208 89834208 A C GBP6 Missense_Mutation p.K33T 0.22 tolerated(0.22) benign(0.052) TCGA-EI-6917-01 1 90400638 90400638 C T LRRC8D Missense_Mutation p.R671C 0.21 tolerated(0.07) benign(0.284) TCGA-EI-6917-01 1 9074741 9074741 G A SLC2A7 Missense_Mutation p.A301V 0.27 tolerated(0.05) possibly_damaging(0.779) TCGA-EI-6917-01 1 91726638 91726638 G T HFM1 3'UTR 0.19 TCGA-EI-6917-01 1 92149389 92149389 G A TGFBR3 Silent p.V821V 0.25 TCGA-EI-6917-01 1 92442839 92442839 G A BRDT Silent p.K286K 0.25 TCGA-EI-6917-01 1 92754683 92754683 T C GLMN Silent p.A140A 0.21 TCGA-EI-6917-01 1 92763575 92763575 C T GLMN 5'UTR 0.19 TCGA-EI-6917-01 1 92946613 92946613 C T GFI1 Missense_Mutation p.E111K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.651) TCGA-EI-6917-01 1 93073163 93073163 C T EVI5 Missense_Mutation p.R634H 0.18 tolerated(0.21) probably_damaging(0.927) TCGA-EI-6917-01 1 93575840 93575840 G A MTF2 Missense_Mutation p.R20Q 0.20 tolerated(0.32) benign(0.011) TCGA-EI-6917-01 1 93744072 93744072 T G CCDC18 3'UTR 0.33 TCGA-EI-6917-01 1 94047920 94047920 C A BCAR3 Nonsense_Mutation p.E542* 0.22 TCGA-EI-6917-01 1 94354655 94354655 G A GCLM Missense_Mutation p.A239V 0.24 tolerated(0.27) benign(0.011) TCGA-EI-6917-01 1 94508345 94508345 G T ABCA4 Silent p.I1100I 0.24 TCGA-EI-6917-01 1 94639538 94639538 C A ARHGAP29 Nonsense_Mutation p.E1225* 0.26 TCGA-EI-6917-01 1 94639961 94639961 G C ARHGAP29 Missense_Mutation p.Q1084E 0.25 tolerated(0.06) benign(0.004) TCGA-EI-6917-01 1 94645488 94645488 C T ARHGAP29 Missense_Mutation p.R758Q 0.29 deleterious(0.02) benign(0.343) TCGA-EI-6917-01 1 95307662 95307662 C T SLC44A3 Silent p.I289I 0.23 TCGA-EI-6917-01 1 95332918 95332918 G A SLC44A3 Missense_Mutation p.R476Q 0.25 deleterious(0.01) benign(0.055) TCGA-EI-6917-01 1 97216993 97216993 G A PTBP2 Missense_Mutation p.E18K 0.29 tolerated(0.05) benign(0.2) TCGA-EI-6917-01 1 9782071 9782071 C T PIK3CD Silent p.F698F 0.19 TCGA-EI-6917-01 1 98348908 98348908 C T DPYD Missense_Mutation p.R21Q 0.32 tolerated(0.07) benign(0.011) TCGA-EI-6917-01 20 10386019 10386019 G A MKKS Missense_Mutation p.A530V 0.18 tolerated(0.41) benign(0.026) TCGA-EI-6917-01 20 10621775 10621775 T G JAG1 Missense_Mutation p.I1012L 0.31 deleterious(0.04) benign(0.42) TCGA-EI-6917-01 20 10626079 10626079 C T JAG1 Missense_Mutation p.G680S 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 1229329 1229329 G T RAD21L1 Missense_Mutation p.Q488H 0.27 deleterious(0.02) benign(0.009) TCGA-EI-6917-01 20 1286167 1286167 C T SNPH Silent p.F318F 0.21 TCGA-EI-6917-01 20 13052962 13052962 G A SPTLC3 Missense_Mutation p.R121Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 20 13763472 13763472 G A ESF1 Silent p.I105I 0.25 TCGA-EI-6917-01 20 13846008 13846008 G T SEL1L2 Intron 0.18 TCGA-EI-6917-01 20 139735 139735 C A DEFB127 3'UTR 0.20 TCGA-EI-6917-01 20 1426360 1426360 G A NSFL1C Missense_Mutation p.R303W 0.29 deleterious(0.03) possibly_damaging(0.829) TCGA-EI-6917-01 20 14306848 14306848 A C FLRT3 Silent p.A435A 0.17 TCGA-EI-6917-01 20 1538234 1538234 T C RP4-576H24.4 Intron 0.30 TCGA-EI-6917-01 20 16348101 16348101 C T KIF16B Missense_Mutation p.R1290Q 0.35 deleterious_low_confidence(0.03) benign(0) TCGA-EI-6917-01 20 16712393 16712393 G T SNRPB2 Missense_Mutation p.D16Y 0.22 deleterious(0) possibly_damaging(0.827) TCGA-EI-6917-01 20 19560688 19560688 C A SLC24A3 Missense_Mutation p.F131L 0.29 deleterious(0.02) possibly_damaging(0.803) TCGA-EI-6917-01 20 19560691 19560691 C A SLC24A3 Missense_Mutation p.F132L 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 19646530 19646530 C T SLC24A3 Missense_Mutation p.S237F 0.36 tolerated(0.29) benign(0.319) TCGA-EI-6917-01 20 19665995 19665995 C T SLC24A3 Silent p.F438F 0.36 TCGA-EI-6917-01 20 20351223 20351223 C A INSM1 3'UTR 0.20 TCGA-EI-6917-01 20 21312958 21312958 G A XRN2 Silent p.P246P 0.30 TCGA-EI-6917-01 20 21319698 21319698 G A XRN2 Missense_Mutation p.R417Q 0.15 deleterious(0.02) probably_damaging(0.987) TCGA-EI-6917-01 20 23016359 23016359 C T SSTR4 Missense_Mutation p.T80M 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 23029766 23029766 C T THBD Missense_Mutation p.D126N 0.13 tolerated(0.24) benign(0.002) TCGA-EI-6917-01 20 23064437 23064437 C T CD93 3'UTR 0.36 TCGA-EI-6917-01 20 23065896 23065896 G A CD93 Missense_Mutation p.R312C 0.11 deleterious(0.03) possibly_damaging(0.794) TCGA-EI-6917-01 20 24937973 24937973 A G CST7 Missense_Mutation p.T41A 0.23 tolerated(0.67) benign(0.001) TCGA-EI-6917-01 20 25434060 25434060 G A NINL 3'UTR 0.28 TCGA-EI-6917-01 20 257256 257256 C T C20orf96 Intron 0.36 TCGA-EI-6917-01 20 2638632 2638632 G T NOP56 Nonsense_Mutation p.E493* 0.26 TCGA-EI-6917-01 20 264676 264676 C A C20orf96 Missense_Mutation p.K78N 0.26 deleterious(0.01) possibly_damaging(0.754) TCGA-EI-6917-01 20 2729198 2729198 C A EBF4 Missense_Mutation p.F183L 0.32 deleterious(0) benign(0.085) TCGA-EI-6917-01 20 2776756 2776756 C T CPXM1 Missense_Mutation p.D432N 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 280509 280509 C T ZCCHC3 3'UTR 0.26 TCGA-EI-6917-01 20 29891190 29891190 C A DEFB116 Missense_Mutation p.G45V 0.26 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 20 3003468 3003468 G A PTPRA Missense_Mutation p.D488N 0.25 deleterious(0) possibly_damaging(0.859) TCGA-EI-6917-01 20 30072173 30072173 C T REM1 Silent p.S279S 0.28 TCGA-EI-6917-01 20 30156985 30156985 C T HM13 Missense_Mutation p.A415V 0.18 deleterious_low_confidence(0) benign(0.007) TCGA-EI-6917-01 20 30231252 30231252 G A COX4I2 Missense_Mutation p.R98H 0.24 tolerated(0.14) benign(0.04) TCGA-EI-6917-01 20 30433103 30433103 G A FOXS1 Silent p.R81R 0.26 TCGA-EI-6917-01 20 30686910 30686910 C T HCK Silent p.I450I 0.20 TCGA-EI-6917-01 20 308632 308632 T G SOX12 3'UTR 0.26 TCGA-EI-6917-01 20 31023762 31023762 G T ASXL1 Missense_Mutation p.A1083S 0.30 tolerated(0.18) benign(0.01) TCGA-EI-6917-01 20 31292274 31292274 C T COMMD7 Missense_Mutation p.E149K 0.21 deleterious(0) possibly_damaging(0.888) TCGA-EI-6917-01 20 31389107 31389107 G A DNMT3B Missense_Mutation p.E674K 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 31394047 31394047 G A DNMT3B Silent p.S778S 0.20 TCGA-EI-6917-01 20 31507933 31507933 G T EFCAB8 Missense_Mutation p.S199I 0.18 TCGA-EI-6917-01 20 31573545 31573545 G T SUN5 Silent p.I298I 0.28 TCGA-EI-6917-01 20 31596434 31596434 C T BPIFB2 Silent p.V18V 0.17 TCGA-EI-6917-01 20 31766012 31766012 T C BPIFA2 Missense_Mutation p.V208A 0.20 deleterious(0.04) benign(0.077) TCGA-EI-6917-01 20 31767472 31767472 C T BPIFA2 Silent p.V236V 0.22 TCGA-EI-6917-01 20 31827693 31827693 C T BPIFA1 Silent p.L135L 0.23 TCGA-EI-6917-01 20 31829867 31829867 C T BPIFA1 Silent p.C224C 0.26 TCGA-EI-6917-01 20 3245106 3245106 G A C20orf194 Nonsense_Mutation p.R951* 0.17 TCGA-EI-6917-01 20 33080340 33080340 G A ITCH Missense_Mutation p.R826K 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-EI-6917-01 20 33095655 33095655 C T ITCH 3'UTR 0.21 TCGA-EI-6917-01 20 33449333 33449333 C T GGT7 Missense_Mutation p.R197Q 0.26 deleterious(0.04) benign(0.007) TCGA-EI-6917-01 20 34060538 34060538 G A CEP250 Missense_Mutation p.G364D 0.31 benign(0.073) TCGA-EI-6917-01 20 34205128 34205128 G A SPAG4 Silent p.E125E 0.41 TCGA-EI-6917-01 20 34205748 34205748 G A SPAG4 Missense_Mutation p.S175N 0.27 tolerated(0.25) benign(0.423) TCGA-EI-6917-01 20 34776279 34776279 G A EPB41L1 Missense_Mutation p.G295D 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 35125456 35125456 C T DLGAP4 Missense_Mutation p.S666L 0.33 deleterious(0) probably_damaging(0.985) TCGA-EI-6917-01 20 35173356 35173356 C T MYL9 Silent p.F23F 0.26 TCGA-EI-6917-01 20 3528055 3528055 A G ATRN Missense_Mutation p.T288A 0.19 tolerated(0.73) benign(0.001) TCGA-EI-6917-01 20 3540045 3540045 A T ATRN Missense_Mutation p.D373V 0.25 deleterious(0) possibly_damaging(0.735) TCGA-EI-6917-01 20 35433278 35433278 C T SOGA1 Missense_Mutation p.D983N 0.14 tolerated(0.06) probably_damaging(0.969) TCGA-EI-6917-01 20 35545391 35545391 C A SAMHD1 Missense_Mutation p.R305I 0.17 deleterious(0.03) benign(0.285) TCGA-EI-6917-01 20 35683981 35683981 C T RBL1 Missense_Mutation p.R481Q 0.41 deleterious(0.03) possibly_damaging(0.756) TCGA-EI-6917-01 20 35802435 35802435 C A MROH8 Missense_Mutation p.E141D 0.26 tolerated_low_confidence(0.19) benign(0.05) TCGA-EI-6917-01 20 36375000 36375000 G A CTNNBL1 Missense_Mutation p.D153N 0.24 deleterious(0) possibly_damaging(0.545) TCGA-EI-6917-01 20 3655211 3655211 G A ADAM33 Silent p.G180G 0.28 TCGA-EI-6917-01 20 36634674 36634674 C T TTI1 Missense_Mutation p.E810K 0.25 tolerated(0.1) benign(0.125) TCGA-EI-6917-01 20 36641724 36641724 C T TTI1 Silent p.E165E 0.33 TCGA-EI-6917-01 20 3670684 3670684 C T SIGLEC1 Missense_Mutation p.D1607N 0.25 tolerated(0.17) benign(0.341) TCGA-EI-6917-01 20 37150170 37150170 G A RALGAPB Missense_Mutation p.R483Q 0.33 tolerated(0.18) benign(0.348) TCGA-EI-6917-01 20 37216774 37216774 G A ADIG 3'UTR 0.27 TCGA-EI-6917-01 20 3777285 3777285 C A CDC25B Missense_Mutation p.S36Y 0.36 deleterious(0.01) benign(0.281) TCGA-EI-6917-01 20 391276 391276 C T RBCK1 Intron 0.32 TCGA-EI-6917-01 20 39713120 39713120 C A TOP1 Missense_Mutation p.P176T 0.25 tolerated(0.55) benign(0) TCGA-EI-6917-01 20 39726857 39726857 A C TOP1 Missense_Mutation p.E285D 0.20 tolerated(0.1) possibly_damaging(0.482) TCGA-EI-6917-01 20 39990650 39990650 G A EMILIN3 Missense_Mutation p.S520L 0.33 tolerated(0.17) benign(0.002) TCGA-EI-6917-01 20 40045903 40045903 G A CHD6 Nonsense_Mutation p.R2072* 0.32 TCGA-EI-6917-01 20 40126809 40126809 A C CHD6 Missense_Mutation p.F325V 0.21 deleterious(0) probably_damaging(0.911) TCGA-EI-6917-01 20 40730773 40730773 T C PTPRT Silent p.A1235A 0.24 TCGA-EI-6917-01 20 419406 419406 G A TBC1D20 Missense_Mutation p.R346W 0.19 deleterious(0) possibly_damaging(0.614) TCGA-EI-6917-01 20 42694461 42694461 C T TOX2 Missense_Mutation p.T357M 0.31 deleterious(0.03) probably_damaging(0.914) TCGA-EI-6917-01 20 43942152 43942152 C T RBPJL Missense_Mutation p.R222C 0.46 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 44098412 44098412 G A WFDC2 5'UTR 0.23 TCGA-EI-6917-01 20 44141258 44141258 G A SPINT3 3'UTR 0.42 TCGA-EI-6917-01 20 44166073 44166073 G T EPPIN-WFDC6 3'UTR 0.19 TCGA-EI-6917-01 20 44429724 44429724 C A DNTTIP1 Silent p.L128L 0.32 TCGA-EI-6917-01 20 44513236 44513236 C T ZSWIM1 3'UTR 0.13 TCGA-EI-6917-01 20 44665418 44665418 G A SLC12A5 Silent p.T178T 0.36 TCGA-EI-6917-01 20 44755286 44755286 A C CD40 Missense_Mutation p.T169P 0.24 tolerated(0.15) benign(0.391) TCGA-EI-6917-01 20 44983880 44983880 G A SLC35C2 Missense_Mutation p.R137C 0.24 deleterious(0) possibly_damaging(0.899) TCGA-EI-6917-01 20 45129982 45129982 G A ZNF334 Missense_Mutation p.R666C 0.16 tolerated(0.22) benign(0.019) TCGA-EI-6917-01 20 45204254 45204254 G A SLC13A3 Silent p.I430I 0.30 TCGA-EI-6917-01 20 45315269 45315269 G A TP53RK 3'UTR 0.18 TCGA-EI-6917-01 20 45315699 45315699 C T TP53RK Missense_Mutation p.R152Q 0.23 tolerated(0.25) benign(0.002) TCGA-EI-6917-01 20 45607213 45607213 C T EYA2 Intron 0.32 TCGA-EI-6917-01 20 45916003 45916003 C T ZMYND8 Silent p.A258A 0.30 TCGA-EI-6917-01 20 46267800 46267800 G A NCOA3 Missense_Mutation p.R854Q 0.27 tolerated(0.11) probably_damaging(0.999) TCGA-EI-6917-01 20 47361666 47361666 C T PREX1 Missense_Mutation p.E104K 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-EI-6917-01 20 47361676 47361676 G T PREX1 Missense_Mutation p.F100L 0.40 tolerated(0.1) probably_damaging(0.999) TCGA-EI-6917-01 20 47606184 47606184 G A ARFGEF2 Missense_Mutation p.R926Q 0.21 deleterious(0.05) possibly_damaging(0.561) TCGA-EI-6917-01 20 47752456 47752456 C A STAU1 Nonsense_Mutation p.E175* 0.19 TCGA-EI-6917-01 20 47864515 47864515 G A ZNFX1 Silent p.F1682F 0.20 TCGA-EI-6917-01 20 47864593 47864593 T C ZNFX1 Silent p.E1656E 0.22 TCGA-EI-6917-01 20 47866167 47866167 G A ZNFX1 Missense_Mutation p.H1132Y 0.26 deleterious(0) probably_damaging(0.978) TCGA-EI-6917-01 20 47887862 47887862 T G ZNFX1 Missense_Mutation p.T163P 0.25 deleterious(0) probably_damaging(0.949) TCGA-EI-6917-01 20 47991242 47991242 G A KCNB1 Silent p.S285S 0.25 TCGA-EI-6917-01 20 47991256 47991256 C T KCNB1 Missense_Mutation p.E281K 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 20 48098719 48098719 C T KCNB1 Missense_Mutation p.R100H 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 48129690 48129690 C T PTGIS Missense_Mutation p.R378Q 0.40 deleterious(0) probably_damaging(0.985) TCGA-EI-6917-01 20 49191166 49191166 G A PTPN1 Missense_Mutation p.R156Q 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 20 49225251 49225251 G A FAM65C Missense_Mutation p.R233C 0.25 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 20 49354428 49354428 G T PARD6B Missense_Mutation p.R34I 0.29 deleterious(0) possibly_damaging(0.707) TCGA-EI-6917-01 20 49510335 49510335 G A ADNP Nonsense_Mutation p.R306* 0.29 TCGA-EI-6917-01 20 49510613 49510613 G A ADNP Missense_Mutation p.S213L 0.22 tolerated(0.05) benign(0.038) TCGA-EI-6917-01 20 50071152 50071152 C T NFATC2 Silent p.Q594Q 0.28 TCGA-EI-6917-01 20 50217673 50217673 G A ATP9A 3'UTR 0.30 TCGA-EI-6917-01 20 51872526 51872526 C T TSHZ2 Silent p.G843G 0.30 TCGA-EI-6917-01 20 51872998 51872998 C T TSHZ2 Missense_Mutation p.R1001W 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 20 54578943 54578943 G A CBLN4 Silent p.F95F 0.23 TCGA-EI-6917-01 20 55066754 55066754 G A GCNT7 Silent p.F262F 0.23 TCGA-EI-6917-01 20 5564963 5564963 C T GPCPD1 Missense_Mutation p.E105K 0.30 tolerated(0.35) benign(0.003) TCGA-EI-6917-01 20 55803340 55803340 C T BMP7 Missense_Mutation p.D186N 0.25 tolerated(0.43) benign(0.046) TCGA-EI-6917-01 20 55906953 55906953 G T SPO11 Nonsense_Mutation p.E66* 0.20 TCGA-EI-6917-01 20 56089711 56089711 C T CTCFL Missense_Mutation p.E423K 0.26 deleterious(0.04) benign(0.234) TCGA-EI-6917-01 20 56179823 56179823 G A ZBP1 Missense_Mutation p.R366C 0.17 deleterious(0.01) benign(0.001) TCGA-EI-6917-01 20 56810428 56810428 G A PPP4R1L 3'Flank 0.26 TCGA-EI-6917-01 20 57042209 57042209 G A APCDD1L Missense_Mutation p.R232W 0.35 tolerated(0.19) benign(0.007) TCGA-EI-6917-01 20 57415482 57415482 C T RP4-806M20.3 5'Flank 0.26 TCGA-EI-6917-01 20 57610141 57610141 G A SLMO2 Missense_Mutation p.A169V 0.29 tolerated(0.1) benign(0.082) TCGA-EI-6917-01 20 57899400 57899400 C T EDN3 Silent p.D201D 0.20 TCGA-EI-6917-01 20 58318216 58318216 G A PHACTR3 Missense_Mutation p.R58Q 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-EI-6917-01 20 58415459 58415459 G A PHACTR3 Missense_Mutation p.E474K 0.23 deleterious(0) possibly_damaging(0.77) TCGA-EI-6917-01 20 5843690 5843690 G A C20orf196 Missense_Mutation p.E67K 0.26 tolerated(0.06) possibly_damaging(0.57) TCGA-EI-6917-01 20 58439170 58439170 C A SYCP2 3'UTR 0.40 TCGA-EI-6917-01 20 58441399 58441399 C A SYCP2 Missense_Mutation p.E1423D 0.32 deleterious(0.03) benign(0.039) TCGA-EI-6917-01 20 58443961 58443961 G T SYCP2 Nonsense_Mutation p.S1254* 0.36 TCGA-EI-6917-01 20 58444983 58444983 G T SYCP2 Missense_Mutation p.S1204Y 0.21 tolerated(0.2) benign(0.025) TCGA-EI-6917-01 20 58456020 58456021 - T SYCP2 Frame_Shift_Ins p.I925Nfs*12 0.20 TCGA-EI-6917-01 20 58521652 58521652 G T FAM217B 3'UTR 0.12 TCGA-EI-6917-01 20 58564182 58564182 G A CDH26 Missense_Mutation p.G416E 0.25 deleterious(0.05) probably_damaging(0.995) TCGA-EI-6917-01 20 58645856 58645856 T C C20orf197 Missense_Mutation p.C92R 0.30 tolerated_low_confidence(0.85) possibly_damaging(0.588) TCGA-EI-6917-01 20 5903620 5903620 G A CHGB Missense_Mutation p.R277Q 0.17 tolerated(0.3) benign(0.313) TCGA-EI-6917-01 20 5904226 5904226 C T CHGB Missense_Mutation p.A479V 0.22 tolerated(0.6) benign(0.403) TCGA-EI-6917-01 20 5904558 5904558 G A CHGB Missense_Mutation p.A590T 0.24 deleterious(0.04) benign(0.14) TCGA-EI-6917-01 20 5939304 5939304 C A MCM8 Missense_Mutation p.L241I 0.23 tolerated(0.19) benign(0.001) TCGA-EI-6917-01 20 60294262 60294262 C A RP11-429E11.3 5'UTR 0.19 TCGA-EI-6917-01 20 60575222 60575222 C A TAF4 Missense_Mutation p.E915D 0.29 probably_damaging(0.987) TCGA-EI-6917-01 20 60848387 60848387 C T OSBPL2 Missense_Mutation p.S139L 0.25 deleterious(0) probably_damaging(0.934) TCGA-EI-6917-01 20 60888230 60888230 C T LAMA5 Missense_Mutation p.D2957N 0.26 possibly_damaging(0.49) TCGA-EI-6917-01 20 60926788 60926788 C T LAMA5 Missense_Mutation p.D310N 0.24 benign(0.433) TCGA-EI-6917-01 20 60962921 60962921 T G RPS21 Missense_Mutation p.F46C 0.29 deleterious(0.01) possibly_damaging(0.866) TCGA-EI-6917-01 20 61151517 61151517 A G C20orf166 Intron 0.30 TCGA-EI-6917-01 20 61443931 61443931 G A OGFR Missense_Mutation p.E322K 0.31 tolerated(0.34) benign(0.008) TCGA-EI-6917-01 20 61463521 61463521 G A COL9A3 Missense_Mutation p.A435T 0.23 tolerated(0.62) benign(0.204) TCGA-EI-6917-01 20 61598206 61598206 G T SLC17A9 Intron 0.40 TCGA-EI-6917-01 20 61828055 61828055 C T YTHDF1 3'UTR 0.23 TCGA-EI-6917-01 20 61907867 61907867 A C ARFGAP1 Missense_Mutation p.D69A 0.23 deleterious(0) benign(0.171) TCGA-EI-6917-01 20 61942781 61942781 G A COL20A1 Missense_Mutation p.A477T 0.32 tolerated(0.65) benign(0.012) TCGA-EI-6917-01 20 62038576 62038576 G A KCNQ2 Silent p.V680V 0.23 TCGA-EI-6917-01 20 62591493 62591493 C T ZNF512B Splice_Site p.X810_splice 0.23 TCGA-EI-6917-01 20 62839225 62839225 G A MYT1 Missense_Mutation p.E226K 0.19 benign(0) TCGA-EI-6917-01 20 6759054 6759054 G A BMP2 Missense_Mutation p.R170Q 0.24 deleterious(0.03) probably_damaging(0.979) TCGA-EI-6917-01 20 8707971 8707971 T G PLCB1 Missense_Mutation p.F565C 0.38 deleterious(0) probably_damaging(0.939) TCGA-EI-6917-01 20 870980 870980 G A ANGPT4 Missense_Mutation p.S114L 0.21 tolerated(0.28) benign(0.005) TCGA-EI-6917-01 20 9364934 9364934 G T PLCB4 Nonsense_Mutation p.E314* 0.23 TCGA-EI-6917-01 20 9400492 9400492 G A PLCB4 Missense_Mutation p.R685Q 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-EI-6917-01 20 9402057 9402057 G T PLCB4 Missense_Mutation p.M744I 0.26 tolerated(0.12) possibly_damaging(0.581) TCGA-EI-6917-01 20 9438077 9438077 G A PLCB4 Missense_Mutation p.E993K 0.52 tolerated(0.52) possibly_damaging(0.775) TCGA-EI-6917-01 20 9459570 9459570 G A PLCB4 Missense_Mutation p.E1167K 0.24 tolerated_low_confidence(0.98) benign(0) TCGA-EI-6917-01 20 9546847 9546847 G A PAK7 Missense_Mutation p.S392L 0.16 tolerated(0.09) benign(0.357) TCGA-EI-6917-01 20 9560897 9560897 C T PAK7 Silent p.P295P 0.30 TCGA-EI-6917-01 20 9561352 9561352 C T PAK7 Missense_Mutation p.E144K 0.23 tolerated(0.21) benign(0.053) TCGA-EI-6917-01 21 10934955 10934955 G A TPTE Nonsense_Mutation p.R280* 0.11 TCGA-EI-6917-01 21 10996107 10996107 G A TPTE RNA 0.13 TCGA-EI-6917-01 21 15592007 15592007 C T RBM11 Missense_Mutation p.R74C 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 21 16337172 16337172 C T NRIP1 Silent p.T1114T 0.25 TCGA-EI-6917-01 21 17135219 17135219 A C USP25 Missense_Mutation p.T19P 0.23 tolerated(0.19) possibly_damaging(0.507) TCGA-EI-6917-01 21 17150246 17150246 G T USP25 Missense_Mutation p.D98Y 0.23 deleterious(0.01) possibly_damaging(0.876) TCGA-EI-6917-01 21 17172152 17172152 G A USP25 Missense_Mutation p.R211Q 0.33 tolerated(0.08) possibly_damaging(0.553) TCGA-EI-6917-01 21 19165818 19165818 C T C21orf91 Missense_Mutation p.E270K 0.21 deleterious(0) possibly_damaging(0.782) TCGA-EI-6917-01 21 19670096 19670096 A G TMPRSS15 Missense_Mutation p.V739A 0.27 tolerated(0.13) possibly_damaging(0.524) TCGA-EI-6917-01 21 22664431 22664431 C T NCAM2 Silent p.F163F 0.19 TCGA-EI-6917-01 21 22849638 22849638 G A NCAM2 Silent p.E641E 0.25 TCGA-EI-6917-01 21 27423426 27423426 A C APP Missense_Mutation p.F184L 0.20 deleterious(0) unknown(0) TCGA-EI-6917-01 21 28212242 28212242 G A ADAMTS1 Nonsense_Mutation p.R602* 0.15 TCGA-EI-6917-01 21 28212331 28212331 G A ADAMTS1 Missense_Mutation p.S572L 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 21 30324491 30324491 C T LTN1 Missense_Mutation p.R1158K 0.18 tolerated(0.39) benign(0.076) TCGA-EI-6917-01 21 30343704 30343704 T G LTN1 Missense_Mutation p.K337N 0.23 tolerated(0.16) benign(0.024) TCGA-EI-6917-01 21 30353480 30353480 C A LTN1 Missense_Mutation p.Q303H 0.18 tolerated(0.18) benign(0.041) TCGA-EI-6917-01 21 30380199 30380199 C A RWDD2B Missense_Mutation p.R203I 0.19 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 21 30701851 30701851 G A BACH1 Missense_Mutation p.R538Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 21 30724114 30724114 G A BACH1-IT1 RNA 0.20 TCGA-EI-6917-01 21 31311807 31311807 G A GRIK1 Silent p.G4G 0.31 TCGA-EI-6917-01 21 31661510 31661510 C A KRTAP25-1 Missense_Mutation p.R100I 0.21 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-EI-6917-01 21 31692174 31692174 G A KRTAP26-1 Silent p.C60C 0.19 TCGA-EI-6917-01 21 31769122 31769122 C T KRTAP13-1 3'UTR 0.22 TCGA-EI-6917-01 21 31874354 31874354 C T KRTAP19-5 Missense_Mutation p.D19N 0.27 tolerated_low_confidence(0.36) unknown(0) TCGA-EI-6917-01 21 32185413 32185413 G A KRTAP8-1 Silent p.F42F 0.25 TCGA-EI-6917-01 21 32491001 32491001 G A TIAM1 3'UTR 0.34 TCGA-EI-6917-01 21 32567612 32567612 C A TIAM1 Nonsense_Mutation p.E835* 0.15 TCGA-EI-6917-01 21 32585770 32585770 C T TIAM1 Missense_Mutation p.E721K 0.13 tolerated(0.1) benign(0.018) TCGA-EI-6917-01 21 33044602 33044602 C T SCAF4 Missense_Mutation p.A852T 0.20 unknown(0) TCGA-EI-6917-01 21 33074680 33074680 G A SCAF4 Missense_Mutation p.R112C 0.16 probably_damaging(0.999) TCGA-EI-6917-01 21 33727868 33727868 G A URB1 Missense_Mutation p.R666W 0.31 deleterious(0) possibly_damaging(0.656) TCGA-EI-6917-01 21 33948990 33948990 C A TCP10L 3'UTR 0.36 TCGA-EI-6917-01 21 34166356 34166356 C T C21orf62 Missense_Mutation p.R126H 0.35 tolerated(0.08) benign(0.128) TCGA-EI-6917-01 21 34444174 34444174 G T OLIG1 3'UTR 0.21 TCGA-EI-6917-01 21 34635394 34635394 G A IFNAR2 Silent p.T379T 0.21 TCGA-EI-6917-01 21 34860908 34860908 C T DNAJC28 Missense_Mutation p.D265N 0.29 tolerated(0.1) possibly_damaging(0.691) TCGA-EI-6917-01 21 34931535 34931535 G T SON Splice_Site p.X2108_splice 0.21 TCGA-EI-6917-01 21 35258739 35258739 C T ITSN1 Silent p.F1664F 0.23 TCGA-EI-6917-01 21 35821850 35821850 G A KCNE1 Missense_Mutation p.S28L 0.11 deleterious(0.01) possibly_damaging(0.625) TCGA-EI-6917-01 21 36079626 36079626 C A CLIC6 Missense_Mutation p.L475I 0.32 tolerated(0.09) possibly_damaging(0.476) TCGA-EI-6917-01 21 36231773 36231773 C T RUNX1 Missense_Mutation p.R204Q 0.26 deleterious(0) possibly_damaging(0.852) TCGA-EI-6917-01 21 37716926 37716926 G A MORC3 Missense_Mutation p.R269H 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 21 37742118 37742118 G A MORC3 Missense_Mutation p.D818N 0.28 tolerated(0.35) benign(0.195) TCGA-EI-6917-01 21 38098518 38098518 C T SIM2 Silent p.G214G 0.20 TCGA-EI-6917-01 21 38495286 38495286 G A TTC3 Missense_Mutation p.R356Q 0.18 tolerated(0.59) benign(0.038) TCGA-EI-6917-01 21 38852988 38852988 G A DYRK1A Missense_Mutation p.D126N 0.23 tolerated(0.08) benign(0.177) TCGA-EI-6917-01 21 38862504 38862504 G A DYRK1A Missense_Mutation p.R231Q 0.21 deleterious(0.05) probably_damaging(0.98) TCGA-EI-6917-01 21 38878592 38878592 C T DYRK1A Intron 0.20 TCGA-EI-6917-01 21 38997464 38997464 A C KCNJ6 Silent p.V423V 0.22 TCGA-EI-6917-01 21 39087237 39087237 G A KCNJ6 Missense_Mutation p.R75C 0.26 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 21 39426840 39426840 C T DSCR4 3'UTR 0.20 TCGA-EI-6917-01 21 39671393 39671393 C T KCNJ15 Silent p.F70F 0.15 TCGA-EI-6917-01 21 39795356 39795356 C T ERG Missense_Mutation p.E129K 0.25 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 21 39870326 39870326 C T ERG Intron 0.29 TCGA-EI-6917-01 21 39870397 39870397 C T ERG Intron 0.33 TCGA-EI-6917-01 21 40549467 40549467 G A PSMG1 Missense_Mutation p.P229L 0.12 deleterious(0) possibly_damaging(0.883) TCGA-EI-6917-01 21 40604198 40604198 G A BRWD1 Nonsense_Mutation p.R969* 0.25 TCGA-EI-6917-01 21 40795218 40795218 A C LCA5L Missense_Mutation p.F174C 0.30 deleterious(0) probably_damaging(0.917) TCGA-EI-6917-01 21 40969602 40969602 C T C21orf88 3'UTR 0.21 TCGA-EI-6917-01 21 41414399 41414399 G A DSCAM Missense_Mutation p.T1862I 0.12 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 21 41416163 41416163 G A DSCAM Missense_Mutation p.A1742V 0.22 deleterious(0.03) benign(0.018) TCGA-EI-6917-01 21 41725468 41725468 C T DSCAM Silent p.S286S 0.26 TCGA-EI-6917-01 21 42748934 42748934 C T MX2 Missense_Mutation p.P34L 0.36 tolerated_low_confidence(0.15) benign(0.004) TCGA-EI-6917-01 21 43256586 43256586 G A PRDM15 Missense_Mutation p.R758C 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 21 43274682 43274682 G A PRDM15 Silent p.G543G 0.31 TCGA-EI-6917-01 21 43411776 43411776 G T ZBTB21 Missense_Mutation p.S810Y 0.23 tolerated(0.2) benign(0.003) TCGA-EI-6917-01 21 43414161 43414161 G T ZBTB21 Missense_Mutation p.S15Y 0.27 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 21 43541251 43541251 G A UMODL1 Missense_Mutation p.R1043Q 0.21 tolerated(0.26) benign(0.417) TCGA-EI-6917-01 21 43702512 43702512 C A ABCG1 Missense_Mutation p.F239L 0.22 deleterious(0.04) possibly_damaging(0.649) TCGA-EI-6917-01 21 44152211 44152211 G A PDE9A Silent p.A158A 0.31 TCGA-EI-6917-01 21 44430269 44430269 T G PKNOX1 Missense_Mutation p.F96V 0.30 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 21 44485349 44485349 C T CBS Missense_Mutation p.D234N 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-EI-6917-01 21 45671560 45671560 C T DNMT3L Missense_Mutation p.D239N 0.31 deleterious(0.03) possibly_damaging(0.756) TCGA-EI-6917-01 21 45773615 45773615 C T TRPM2 Missense_Mutation p.S11L 0.29 tolerated_low_confidence(0.09) benign(0.007) TCGA-EI-6917-01 21 45817751 45817751 G T TRPM2 Missense_Mutation p.R685I 0.25 deleterious(0.01) possibly_damaging(0.864) TCGA-EI-6917-01 21 45919798 45919798 G A TSPEAR Silent p.F626F 0.11 TCGA-EI-6917-01 21 45929264 45929264 G A TSPEAR Silent p.F524F 0.31 TCGA-EI-6917-01 21 46057875 46057875 G A KRTAP10-10 Missense_Mutation p.A181T 0.26 tolerated(0.75) benign(0.091) TCGA-EI-6917-01 21 46320235 46320235 G A ITGB2 Silent p.F299F 0.25 TCGA-EI-6917-01 21 46624512 46624512 C T ADARB1 Silent p.F576F 0.23 TCGA-EI-6917-01 21 46918127 46918127 A C COL18A1 Intron 0.33 TCGA-EI-6917-01 21 47412704 47412704 C T COL6A1 Missense_Mutation p.R439W 0.16 deleterious(0.01) probably_damaging(0.965) TCGA-EI-6917-01 21 47418816 47418816 G A COL6A1 Silent p.T539T 0.20 TCGA-EI-6917-01 21 47422234 47422234 C T COL6A1 Silent p.I723I 0.23 TCGA-EI-6917-01 21 47556367 47556367 G A FTCD 3'UTR 0.12 TCGA-EI-6917-01 21 47588562 47588562 G A SPATC1L Silent p.F68F 0.29 TCGA-EI-6917-01 21 47671552 47671552 C T MCM3AP Missense_Mutation p.G1394D 0.26 tolerated(0.4) possibly_damaging(0.476) TCGA-EI-6917-01 21 48019408 48019408 T G S100B Missense_Mutation p.K49N 0.18 tolerated(0.07) benign(0.042) TCGA-EI-6917-01 22 17071934 17071934 C A CCT8L2 Nonsense_Mutation p.G503* 0.19 TCGA-EI-6917-01 22 17073120 17073120 G A CCT8L2 Silent p.F107F 0.48 TCGA-EI-6917-01 22 17662278 17662278 G T CECR1 3'UTR 0.35 TCGA-EI-6917-01 22 18226665 18226665 C T BID Missense_Mutation p.E89K 0.31 tolerated(0.09) possibly_damaging(0.661) TCGA-EI-6917-01 22 18300866 18300866 G A MICAL3 Missense_Mutation p.P1521S 0.11 probably_damaging(0.998) TCGA-EI-6917-01 22 18778730 18778730 C A GGT3P RNA 0.17 TCGA-EI-6917-01 22 19044559 19044559 C T DGCR2 Missense_Mutation p.D248N 0.35 tolerated(0.25) benign(0.009) TCGA-EI-6917-01 22 19120110 19120110 C T TSSK2 3'UTR 0.24 TCGA-EI-6917-01 22 19363238 19363238 G A HIRA Missense_Mutation p.A564V 0.24 tolerated(0.17) probably_damaging(0.998) TCGA-EI-6917-01 22 19365469 19365469 G A HIRA Silent p.F512F 0.32 TCGA-EI-6917-01 22 19470228 19470228 C A CDC45 Missense_Mutation p.L74I 0.21 deleterious(0.01) probably_damaging(0.933) TCGA-EI-6917-01 22 19750839 19750839 C T TBX1 Silent p.F162F 0.26 TCGA-EI-6917-01 22 20385751 20385751 G A PI4KAP1 RNA 0.37 TCGA-EI-6917-01 22 20457370 20457370 T C RIMBP3 Missense_Mutation p.E1311G 0.52 tolerated(0.09) benign(0.129) TCGA-EI-6917-01 22 20861986 20861986 G A MED15 Silent p.E7E 0.26 TCGA-EI-6917-01 22 21088097 21088097 C T PI4KA Missense_Mutation p.D1363N 0.27 tolerated(0.18) possibly_damaging(0.581) TCGA-EI-6917-01 22 21141473 21141473 C T SERPIND1 3'UTR 0.53 TCGA-EI-6917-01 22 21288457 21288457 G A CRKL Silent p.Q234Q 0.21 TCGA-EI-6917-01 22 21349224 21349224 C T LZTR1 Silent p.F617F 0.16 TCGA-EI-6917-01 22 21357492 21357492 G T AC002472.1 3'Flank 0.27 TCGA-EI-6917-01 22 21403296 21403296 G A AC002472.13 Missense_Mutation p.A158T 0.42 tolerated(0.23) benign(0.216) TCGA-EI-6917-01 22 21965220 21965220 G A UBE2L3 Silent p.P124P 0.21 TCGA-EI-6917-01 22 21996749 21996749 C T SDF2L1 Silent p.L42L 0.15 TCGA-EI-6917-01 22 22051266 22051266 G A PPIL2 3'UTR 0.41 TCGA-EI-6917-01 22 22153410 22153410 T C MAPK1 Missense_Mutation p.D167G 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 22 22312958 22312958 G A TOP3B Silent p.F671F 0.31 TCGA-EI-6917-01 22 22599357 22599357 G T VPREB1 Splice_Site p.X16_splice 0.21 TCGA-EI-6917-01 22 22786596 22786596 G A IGLV1-36 Missense_Mutation p.G49E 0.23 tolerated_low_confidence(0.1) benign(0.168) TCGA-EI-6917-01 22 22868784 22868784 C T ZNF280A Missense_Mutation p.E391K 0.30 deleterious(0.02) possibly_damaging(0.84) TCGA-EI-6917-01 22 22868820 22868820 G T ZNF280A Missense_Mutation p.L379I 0.25 deleterious(0) probably_damaging(0.976) TCGA-EI-6917-01 22 22892245 22892245 C T PRAME Missense_Mutation p.A286T 0.25 tolerated(0.49) benign(0.002) TCGA-EI-6917-01 22 23011119 23011119 C T IGLV3-27 Missense_Mutation p.A61V 0.42 deleterious(0.05) benign(0.052) TCGA-EI-6917-01 22 23465561 23465561 C T GNAZ Silent p.F337F 0.34 TCGA-EI-6917-01 22 23615882 23615882 G A BCR Missense_Mutation p.R679H 0.12 deleterious(0) probably_damaging(0.954) TCGA-EI-6917-01 22 23652513 23652513 C T BCR Silent p.I1025I 0.07 TCGA-EI-6917-01 22 24038802 24038802 C T RGL4 Missense_Mutation p.A363V 0.27 tolerated(0.11) benign(0.046) TCGA-EI-6917-01 22 24095200 24095200 G A VPREB3 Missense_Mutation p.R79W 0.19 deleterious(0) probably_damaging(0.953) TCGA-EI-6917-01 22 24560470 24560470 C T CABIN1 Missense_Mutation p.R1617W 0.23 deleterious(0) possibly_damaging(0.708) TCGA-EI-6917-01 22 24717418 24717418 G A SPECC1L Missense_Mutation p.R157Q 0.33 tolerated(0.42) benign(0.04) TCGA-EI-6917-01 22 24898425 24898425 A G UPB1 Intron 0.31 TCGA-EI-6917-01 22 26164456 26164456 G T MYO18B Missense_Mutation p.K191N 0.24 deleterious_low_confidence(0) possibly_damaging(0.597) TCGA-EI-6917-01 22 26166945 26166945 C T MYO18B Silent p.V562V 0.29 TCGA-EI-6917-01 22 26287336 26287336 G A MYO18B Silent p.Q1500Q 0.22 TCGA-EI-6917-01 22 26688743 26688743 C T SEZ6L Missense_Mutation p.L156F 0.15 tolerated_low_confidence(0.23) benign(0.004) TCGA-EI-6917-01 22 26875484 26875484 A C HPS4 Intron 0.33 TCGA-EI-6917-01 22 27008117 27008117 C T CRYBB1 Missense_Mutation p.R73Q 0.22 tolerated(0.18) benign(0.06) TCGA-EI-6917-01 22 28378287 28378287 C T TTC28 Silent p.A2456A 0.46 TCGA-EI-6917-01 22 29141918 29141918 G T HSCB Nonsense_Mutation p.E164* 0.26 TCGA-EI-6917-01 22 29169735 29169735 A G CCDC117 Missense_Mutation p.K70E 0.23 deleterious(0) possibly_damaging(0.486) TCGA-EI-6917-01 22 29735105 29735105 G A AP1B1 Silent p.F679F 0.33 TCGA-EI-6917-01 22 29833475 29833475 G T RFPL1 5'Flank 0.36 TCGA-EI-6917-01 22 29837752 29837752 G T RFPL1 Nonsense_Mutation p.E199* 0.31 TCGA-EI-6917-01 22 29886026 29886026 G A NEFH Silent p.A799A 0.34 TCGA-EI-6917-01 22 29886639 29886639 G T NEFH Missense_Mutation p.D1004Y 0.37 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 22 30494897 30494897 G T HORMAD2 Missense_Mutation p.K36N 0.34 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 22 30731657 30731657 A G SF3A1 Missense_Mutation p.L731P 0.09 deleterious(0) probably_damaging(0.928) TCGA-EI-6917-01 22 30855965 30855965 G A SEC14L3 3'UTR 0.25 TCGA-EI-6917-01 22 30866520 30866520 T G SEC14L3 Missense_Mutation p.D35A 0.09 deleterious(0.01) possibly_damaging(0.653) TCGA-EI-6917-01 22 30885881 30885881 G T SEC14L4 3'UTR 0.31 TCGA-EI-6917-01 22 31352766 31352766 C A MORC2 5'UTR 0.26 TCGA-EI-6917-01 22 31354670 31354670 C T MORC2 5'UTR 0.18 TCGA-EI-6917-01 22 31597578 31597578 T C RNF185 Missense_Mutation p.I153T 0.25 tolerated(0.28) benign(0.157) TCGA-EI-6917-01 22 31673301 31673301 T G LIMK2 3'UTR 0.46 TCGA-EI-6917-01 22 32112546 32112546 G A PRR14L Missense_Mutation p.R427C 0.22 tolerated(0.12) benign(0.004) TCGA-EI-6917-01 22 32202132 32202132 C A DEPDC5 Silent p.L414L 0.34 TCGA-EI-6917-01 22 32620424 32620424 G A SLC5A4 Missense_Mutation p.R499C 0.23 deleterious(0) possibly_damaging(0.893) TCGA-EI-6917-01 22 32849349 32849349 A C BPIFC Intron 0.12 TCGA-EI-6917-01 22 36684327 36684327 C T MYH9 Missense_Mutation p.E1635K 0.38 benign(0.417) TCGA-EI-6917-01 22 36696946 36696946 C T MYH9 Missense_Mutation p.R930H 0.33 benign(0.426) TCGA-EI-6917-01 22 37260966 37260966 C T NCF4 Silent p.F41F 0.24 TCGA-EI-6917-01 22 37318297 37318297 C T CSF2RB Silent p.C16C 0.21 TCGA-EI-6917-01 22 37771856 37771856 C A ELFN2 5'UTR 0.19 TCGA-EI-6917-01 22 38211720 38211720 G A GCAT Missense_Mutation p.A315T 0.18 deleterious(0) benign(0.311) TCGA-EI-6917-01 22 38270517 38270517 G A EIF3L Missense_Mutation p.E298K 0.27 deleterious(0.03) benign(0.269) TCGA-EI-6917-01 22 38494111 38494111 G A BAIAP2L2 Missense_Mutation p.R142C 0.27 deleterious(0) probably_damaging(0.958) TCGA-EI-6917-01 22 38610978 38610978 C A MAFF 3'UTR 0.22 TCGA-EI-6917-01 22 38627261 38627261 T C TMEM184B Silent p.G146G 0.15 TCGA-EI-6917-01 22 38823919 38823919 G A KCNJ4 Silent p.F73F 0.23 TCGA-EI-6917-01 22 39022293 39022293 G T FAM227A Missense_Mutation p.L242I 0.25 deleterious(0.01) probably_damaging(0.966) TCGA-EI-6917-01 22 39125532 39125532 G A GTPBP1 Silent p.T594T 0.24 TCGA-EI-6917-01 22 39224315 39224315 C G NPTXR Missense_Mutation p.G276A 0.18 tolerated(0.19) benign(0.138) TCGA-EI-6917-01 22 39482428 39482428 G A APOBEC3G Missense_Mutation p.E294K 0.25 tolerated(0.25) benign(0.072) TCGA-EI-6917-01 22 39530528 39530528 C T CBX7 Missense_Mutation p.R159H 0.30 deleterious(0.02) possibly_damaging(0.635) TCGA-EI-6917-01 22 39621810 39621810 A G PDGFB Missense_Mutation p.V215A 0.26 tolerated(0.31) benign(0.242) TCGA-EI-6917-01 22 39911176 39911176 G A MIEF1 3'UTR 0.39 TCGA-EI-6917-01 22 40030702 40030702 G A CACNA1I Missense_Mutation p.R238H 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 22 40661483 40661483 C T TNRC6B Nonsense_Mutation p.R417* 0.28 TCGA-EI-6917-01 22 40662002 40662002 C T TNRC6B Missense_Mutation p.R590C 0.27 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 22 40662750 40662750 C T TNRC6B Missense_Mutation p.S839L 0.17 deleterious(0.01) benign(0.368) TCGA-EI-6917-01 22 40673109 40673109 C A TNRC6B Nonsense_Mutation p.S1057* 0.31 TCGA-EI-6917-01 22 40804368 40804368 G A SGSM3 Missense_Mutation p.E573K 0.29 deleterious(0.02) possibly_damaging(0.531) TCGA-EI-6917-01 22 41077422 41077422 C A MCHR1 Silent p.L253L 0.41 TCGA-EI-6917-01 22 41077577 41077577 C T MCHR1 Missense_Mutation p.T305M 0.36 tolerated(0.06) benign(0.011) TCGA-EI-6917-01 22 41244325 41244325 C T ST13 Missense_Mutation p.E73K 0.30 tolerated(0.13) benign(0.027) TCGA-EI-6917-01 22 41318450 41318450 C T XPNPEP3 Missense_Mutation p.T390I 0.28 tolerated(0.28) benign(0.027) TCGA-EI-6917-01 22 41533773 41533773 G A EP300 Missense_Mutation p.R580Q 0.31 benign(0.133) TCGA-EI-6917-01 22 41572335 41572335 G A EP300 Missense_Mutation p.D1622N 0.30 probably_damaging(0.98) TCGA-EI-6917-01 22 41783470 41783470 C T TEF Silent p.G91G 0.20 TCGA-EI-6917-01 22 41790299 41790299 C A TEF Silent p.V225V 0.31 TCGA-EI-6917-01 22 42091353 42091353 G A C22orf46 3'UTR 0.29 TCGA-EI-6917-01 22 42144176 42144176 C A MEI1 Silent p.L582L 0.21 TCGA-EI-6917-01 22 43604115 43604115 G A SCUBE1 Silent p.S899S 0.17 TCGA-EI-6917-01 22 43606077 43606077 G A SCUBE1 Silent p.C851C 0.30 TCGA-EI-6917-01 22 44022414 44022414 A C EFCAB6 Missense_Mutation p.L793R 0.23 deleterious(0.01) possibly_damaging(0.643) TCGA-EI-6917-01 22 44067916 44067916 C T EFCAB6 Missense_Mutation p.R526Q 0.28 tolerated(0.08) benign(0.096) TCGA-EI-6917-01 22 44074010 44074010 G A EFCAB6 Nonsense_Mutation p.R429* 0.26 TCGA-EI-6917-01 22 44258203 44258203 G A SULT4A1 Silent p.F20F 0.25 TCGA-EI-6917-01 22 44602300 44602300 G A PARVG Silent p.P330P 0.24 TCGA-EI-6917-01 22 45241171 45241171 G A ARHGAP8 Missense_Mutation p.E329K 0.26 tolerated(0.12) benign(0.016) TCGA-EI-6917-01 22 46114330 46114330 G A ATXN10 Missense_Mutation p.E229K 0.26 deleterious(0.04) possibly_damaging(0.786) TCGA-EI-6917-01 22 46134650 46134650 G A ATXN10 Missense_Mutation p.E312K 0.21 deleterious(0) probably_damaging(0.956) TCGA-EI-6917-01 22 46505160 46505160 G A FLJ27365 Missense_Mutation p.A55T 0.16 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 22 46654041 46654041 G T PKDREJ Missense_Mutation p.L1727I 0.27 tolerated(0.28) benign(0.114) TCGA-EI-6917-01 22 46780524 46780524 C T CELSR1 Missense_Mutation p.D2267N 0.34 tolerated(0.16) benign(0.013) TCGA-EI-6917-01 22 46804992 46804992 G T CELSR1 Silent p.I1709I 0.24 TCGA-EI-6917-01 22 46860067 46860067 G A CELSR1 Silent p.D1240D 0.22 TCGA-EI-6917-01 22 47189486 47189486 G A TBC1D22A Missense_Mutation p.D70N 0.35 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 22 47569246 47569246 G A TBC1D22A Missense_Mutation p.A511T 0.30 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 22 50168006 50168006 A G BRD1 Silent p.L1018L 0.34 TCGA-EI-6917-01 22 50277239 50277239 C T ZBED4 5'UTR 0.27 TCGA-EI-6917-01 22 50283468 50283468 C A ZBED4 3'UTR 0.24 TCGA-EI-6917-01 22 50523212 50523212 C T MLC1 Silent p.S40S 0.23 TCGA-EI-6917-01 22 50553598 50553598 G A MOV10L1 Silent p.K394K 0.42 TCGA-EI-6917-01 22 50637604 50637604 C T TRABD 3'UTR 0.28 TCGA-EI-6917-01 22 50654210 50654210 C T SELO Silent p.G472G 0.31 TCGA-EI-6917-01 22 50845299 50845299 G A PPP6R2 Missense_Mutation p.E137K 0.24 deleterious(0) possibly_damaging(0.778) TCGA-EI-6917-01 22 50961138 50961138 C T NCAPH2 Nonsense_Mutation p.R473* 0.15 TCGA-EI-6917-01 22 51065291 51065291 G A ARSA Missense_Mutation p.R219C 0.26 deleterious(0.03) possibly_damaging(0.521) TCGA-EI-6917-01 22 51207911 51207911 G A RABL2B Missense_Mutation p.S159L 0.18 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 22 51220632 51220632 C T RABL2B Missense_Mutation p.A31T 0.19 deleterious(0.05) possibly_damaging(0.629) TCGA-EI-6917-01 2 100019406 100019406 C T REV1 Silent p.Q1110Q 0.20 TCGA-EI-6917-01 2 100038060 100038060 C T REV1 Missense_Mutation p.E578K 0.24 tolerated(0.12) benign(0.426) TCGA-EI-6917-01 2 100052316 100052316 C T REV1 Missense_Mutation p.R434Q 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-EI-6917-01 2 100210114 100210114 G A AFF3 Missense_Mutation p.S695L 0.33 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 2 100210258 100210258 G A AFF3 Missense_Mutation p.P647L 0.35 tolerated(0.15) benign(0.005) TCGA-EI-6917-01 2 100911961 100911961 G A LONRF2 Nonsense_Mutation p.R511* 0.30 TCGA-EI-6917-01 2 100916291 100916291 C A LONRF2 Missense_Mutation p.K385N 0.24 tolerated(0.1) benign(0.157) TCGA-EI-6917-01 2 101014503 101014503 C T CHST10 Silent p.K98K 0.28 TCGA-EI-6917-01 2 10105453 10105453 C T GRHL1 Silent p.I351I 0.27 TCGA-EI-6917-01 2 101554236 101554236 G A NPAS2 Missense_Mutation p.A99T 0.31 deleterious(0.04) probably_damaging(0.919) TCGA-EI-6917-01 2 101598697 101598697 C T NPAS2 Missense_Mutation p.S496L 0.21 deleterious(0.02) benign(0.372) TCGA-EI-6917-01 2 101638815 101638815 C T TBC1D8 Missense_Mutation p.E882K 0.27 tolerated(0.36) benign(0.154) TCGA-EI-6917-01 2 10186331 10186331 G A KLF11 Missense_Mutation p.E33K 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-EI-6917-01 2 102964435 102964435 C T IL1RL1 Missense_Mutation p.A334V 0.15 deleterious(0.04) benign(0.437) TCGA-EI-6917-01 2 102965660 102965660 T C IL1RL1 Silent p.C413C 0.24 TCGA-EI-6917-01 2 103003344 103003344 C T IL18R1 Missense_Mutation p.A278V 0.21 tolerated(0.74) benign(0.095) TCGA-EI-6917-01 2 103136406 103136406 C T SLC9A4 Missense_Mutation p.R604W 0.20 deleterious(0) probably_damaging(0.964) TCGA-EI-6917-01 2 103299826 103299826 G A SLC9A2 Missense_Mutation p.E371K 0.21 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 2 105473168 105473168 C T POU3F3 Silent p.I400I 0.23 TCGA-EI-6917-01 2 105896995 105896995 C T TGFBRAP1 Missense_Mutation p.R436H 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 2 106688337 106688337 A C C2orf40 Missense_Mutation p.Q39H 0.35 deleterious(0.01) possibly_damaging(0.824) TCGA-EI-6917-01 2 106694311 106694311 G T C2orf40 Missense_Mutation p.D126Y 0.26 deleterious(0) probably_damaging(0.944) TCGA-EI-6917-01 2 107040981 107040981 C T RGPD3 Missense_Mutation p.A1148T 0.24 deleterious(0.01) possibly_damaging(0.73) TCGA-EI-6917-01 2 107049639 107049639 G A RGPD3 Nonsense_Mutation p.R770* 0.18 TCGA-EI-6917-01 2 107446609 107446609 G A ST6GAL2 Missense_Mutation p.P411S 0.25 probably_damaging(1) TCGA-EI-6917-01 2 108475713 108475713 A G RGPD4 Missense_Mutation p.T474A 0.23 tolerated(0.1) possibly_damaging(0.636) TCGA-EI-6917-01 2 108507285 108507285 C A RGPD4 3'UTR 0.26 TCGA-EI-6917-01 2 108622600 108622600 C T SLC5A7 Silent p.F279F 0.53 TCGA-EI-6917-01 2 109109118 109109118 G A GCC2 Missense_Mutation p.R1440Q 0.31 tolerated(0.07) benign(0.007) TCGA-EI-6917-01 2 109116158 109116158 G A GCC2 Silent p.T1644T 0.09 TCGA-EI-6917-01 2 109381659 109381659 G A RANBP2 Missense_Mutation p.R1555Q 0.22 tolerated(0.09) benign(0.145) TCGA-EI-6917-01 2 109384600 109384600 C T RANBP2 Silent p.F2535F 0.23 TCGA-EI-6917-01 2 1093917 1093917 C T SNTG2 Silent p.G82G 0.21 TCGA-EI-6917-01 2 1093920 1093920 C T SNTG2 Silent p.G83G 0.21 TCGA-EI-6917-01 2 109397730 109397730 A C RANBP2 Missense_Mutation p.N2869H 0.32 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 2 109411148 109411148 G A CCDC138 Missense_Mutation p.E183K 0.25 deleterious(0) possibly_damaging(0.502) TCGA-EI-6917-01 2 110849299 110849299 A G MALL Missense_Mutation p.Y52H 0.10 tolerated(0.54) benign(0.004) TCGA-EI-6917-01 2 112854682 112854682 T G TMEM87B Missense_Mutation p.F389C 0.29 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 2 112922646 112922646 G A FBLN7 Missense_Mutation p.E102K 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 11312065 11312065 C A PQLC3 Missense_Mutation p.F123L 0.21 tolerated(1) benign(0.001) TCGA-EI-6917-01 2 113157316 113157316 C T RGPD8 Missense_Mutation p.A650T 0.28 deleterious(0) benign(0.001) TCGA-EI-6917-01 2 11323520 11323520 G T ROCK2 3'UTR 0.30 TCGA-EI-6917-01 2 113417111 113417111 G A SLC20A1 Missense_Mutation p.R460Q 0.26 deleterious(0.01) probably_damaging(0.995) TCGA-EI-6917-01 2 114513945 114513945 A G SLC35F5 Splice_Site p.X14_splice 0.17 TCGA-EI-6917-01 2 11591922 11591922 G T E2F6 Missense_Mutation p.L131I 0.32 tolerated(0.23) benign(0.345) TCGA-EI-6917-01 2 116485465 116485465 G A DPP10 Missense_Mutation p.G221E 0.21 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 116548905 116548905 G A DPP10 Missense_Mutation p.R562Q 0.20 tolerated(0.1) benign(0.065) TCGA-EI-6917-01 2 11725999 11725999 A C GREB1 Missense_Mutation p.K376T 0.25 tolerated(0.09) possibly_damaging(0.592) TCGA-EI-6917-01 2 11770213 11770213 G A GREB1 Missense_Mutation p.R1530Q 0.25 deleterious(0) probably_damaging(0.964) TCGA-EI-6917-01 2 11907898 11907898 G T LPIN1 Nonsense_Mutation p.E117* 0.26 TCGA-EI-6917-01 2 119699964 119699964 G A MARCO Missense_Mutation p.E30K 0.38 tolerated(0.16) benign(0.094) TCGA-EI-6917-01 2 120069246 120069246 C T C2orf76 Missense_Mutation p.E86K 0.20 tolerated(0.06) benign(0.029) TCGA-EI-6917-01 2 120219430 120219430 G A SCTR Silent p.F261F 0.25 TCGA-EI-6917-01 2 120439283 120439283 G A TMEM177 Missense_Mutation p.R285Q 0.13 tolerated(0.14) probably_damaging(0.996) TCGA-EI-6917-01 2 120714505 120714505 C T PTPN4 Missense_Mutation p.S689L 0.28 tolerated(1) benign(0.157) TCGA-EI-6917-01 2 121050738 121050738 G A RALB Missense_Mutation p.E175K 0.26 deleterious(0.03) benign(0.138) TCGA-EI-6917-01 2 121726411 121726411 G A GLI2 Silent p.S255S 0.28 TCGA-EI-6917-01 2 121744155 121744155 C T GLI2 Missense_Mutation p.T753M 0.20 tolerated(0.16) possibly_damaging(0.891) TCGA-EI-6917-01 2 121747853 121747853 G A GLI2 Missense_Mutation p.E1455K 0.20 deleterious(0.01) probably_damaging(0.981) TCGA-EI-6917-01 2 122004483 122004483 G A TFCP2L1 Nonsense_Mutation p.R190* 0.15 TCGA-EI-6917-01 2 122120867 122120867 G A CLASP1 Nonsense_Mutation p.R1363* 0.14 TCGA-EI-6917-01 2 122139879 122139879 G A CLASP1 Silent p.A1132A 0.38 TCGA-EI-6917-01 2 122168543 122168543 G A CLASP1 Missense_Mutation p.R775W 0.32 deleterious(0.02) probably_damaging(0.945) TCGA-EI-6917-01 2 1241682 1241682 G A SNTG2 Missense_Mutation p.A248T 0.40 deleterious(0.01) probably_damaging(0.978) TCGA-EI-6917-01 2 1241748 1241748 C T SNTG2 Missense_Mutation p.R270W 0.25 deleterious(0) possibly_damaging(0.841) TCGA-EI-6917-01 2 125262112 125262112 C T CNTNAP5 Missense_Mutation p.R435C 0.30 tolerated(0.07) possibly_damaging(0.67) TCGA-EI-6917-01 2 125521686 125521686 A T CNTNAP5 Missense_Mutation p.N831I 0.30 deleterious(0.01) benign(0.25) TCGA-EI-6917-01 2 125555703 125555703 C T CNTNAP5 Missense_Mutation p.S1007L 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-EI-6917-01 2 127453784 127453784 C T GYPC 3'UTR 0.32 TCGA-EI-6917-01 2 128408412 128408412 G A GPR17 Missense_Mutation p.A63T 0.26 tolerated(0.27) benign(0.126) TCGA-EI-6917-01 2 128480610 128480610 C T WDR33 Missense_Mutation p.E434K 0.16 deleterious(0.01) unknown(0) TCGA-EI-6917-01 2 128480616 128480616 C A WDR33 Missense_Mutation p.D432Y 0.18 deleterious(0) unknown(0) TCGA-EI-6917-01 2 128528416 128528416 C T WDR33 Missense_Mutation p.R47Q 0.22 deleterious(0.02) unknown(0) TCGA-EI-6917-01 2 128934401 128934401 G A UGGT1 Missense_Mutation p.D1185N 0.21 tolerated(0.08) probably_damaging(0.979) TCGA-EI-6917-01 2 129026280 129026280 G A HS6ST1 Missense_Mutation p.S231L 0.17 tolerated(0.06) probably_damaging(0.996) TCGA-EI-6917-01 2 130832320 130832320 C T POTEF Missense_Mutation p.V909M 0.36 deleterious_low_confidence(0.01) probably_damaging(0.972) TCGA-EI-6917-01 2 130832907 130832907 C T POTEF Missense_Mutation p.G713D 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EI-6917-01 2 130877719 130877719 C T POTEF Missense_Mutation p.D124N 0.15 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EI-6917-01 2 130897032 130897032 C T CCDC74B 3'UTR 0.23 TCGA-EI-6917-01 2 131520144 131520144 C T AMER3 Missense_Mutation p.R167W 0.24 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 2 131520915 131520915 G A AMER3 Missense_Mutation p.E424K 0.35 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 131674952 131674952 T G ARHGEF4 Intron 0.26 TCGA-EI-6917-01 2 131798904 131798904 C T ARHGEF4 Silent p.F402F 0.32 TCGA-EI-6917-01 2 131813160 131813160 C T FAM168B Missense_Mutation p.R88Q 0.25 tolerated_low_confidence(0.06) probably_damaging(0.986) TCGA-EI-6917-01 2 131976123 131976123 G A POTEE Missense_Mutation p.D50N 0.28 tolerated_low_confidence(0.05) possibly_damaging(0.555) TCGA-EI-6917-01 2 131981602 131981602 G A POTEE Missense_Mutation p.E266K 0.15 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-EI-6917-01 2 132287595 132287595 G A CCDC74A Intron 0.31 TCGA-EI-6917-01 2 133542845 133542845 G A NCKAP5 Silent p.G513G 0.26 TCGA-EI-6917-01 2 135170547 135170547 A C MGAT5 Missense_Mutation p.K546N 0.23 tolerated(0.16) benign(0.268) TCGA-EI-6917-01 2 135470854 135470854 C T TMEM163 Missense_Mutation p.E80K 0.18 tolerated(0.2) probably_damaging(0.926) TCGA-EI-6917-01 2 135711054 135711054 C T CCNT2 Silent p.Y343Y 0.28 TCGA-EI-6917-01 2 135988495 135988495 G A ZRANB3 Silent p.F514F 0.26 TCGA-EI-6917-01 2 136567033 136567033 C T LCT Missense_Mutation p.D962N 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 136567502 136567502 G A LCT Silent p.F805F 0.27 TCGA-EI-6917-01 2 136602215 136602215 T C MCM6 Missense_Mutation p.N750S 0.29 tolerated(0.3) benign(0.005) TCGA-EI-6917-01 2 136626426 136626426 G A MCM6 Nonsense_Mutation p.R124* 0.36 TCGA-EI-6917-01 2 136872425 136872425 C A CXCR4 3'UTR 0.18 TCGA-EI-6917-01 2 1371236 1371236 A G SNTG2 Missense_Mutation p.Y537C 0.42 tolerated_low_confidence(0.24) benign(0.003) TCGA-EI-6917-01 2 139308084 139308084 C T SPOPL Missense_Mutation p.T37I 0.18 deleterious(0.02) probably_damaging(0.967) TCGA-EI-6917-01 2 139428880 139428880 T C NXPH2 Missense_Mutation p.D136G 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 139429155 139429155 G A NXPH2 Silent p.V44V 0.16 TCGA-EI-6917-01 2 140990837 140990837 C T LRP1B Missense_Mutation p.R4573Q 0.19 benign(0.238) TCGA-EI-6917-01 2 140997030 140997030 G T LRP1B Missense_Mutation p.L4466I 0.23 benign(0.364) TCGA-EI-6917-01 2 141093343 141093343 G A LRP1B Missense_Mutation p.T3986I 0.23 possibly_damaging(0.507) TCGA-EI-6917-01 2 141243011 141243011 C A LRP1B Missense_Mutation p.R3109I 0.20 benign(0.308) TCGA-EI-6917-01 2 141283505 141283505 C T LRP1B Missense_Mutation p.R2645K 0.19 benign(0) TCGA-EI-6917-01 2 141298571 141298571 C T LRP1B Missense_Mutation p.R2495Q 0.28 benign(0.238) TCGA-EI-6917-01 2 141356198 141356198 A G LRP1B Splice_Site p.X2398_splice 0.24 TCGA-EI-6917-01 2 141609278 141609278 C T LRP1B Missense_Mutation p.A1552T 0.32 benign(0.006) TCGA-EI-6917-01 2 141625694 141625694 C A LRP1B Missense_Mutation p.E1436D 0.26 benign(0.217) TCGA-EI-6917-01 2 141625795 141625795 G A LRP1B Missense_Mutation p.R1403C 0.23 benign(0.112) TCGA-EI-6917-01 2 141819774 141819774 C T LRP1B Missense_Mutation p.R361Q 0.21 benign(0.238) TCGA-EI-6917-01 2 144525632 144525632 G A ARHGAP15 Missense_Mutation p.R440Q 0.22 deleterious(0.04) probably_damaging(0.961) TCGA-EI-6917-01 2 144710364 144710364 A C GTDC1 Missense_Mutation p.L393V 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 145156575 145156575 A C ZEB2 Missense_Mutation p.L727V 0.29 tolerated(0.51) benign(0.067) TCGA-EI-6917-01 2 145157728 145157728 G C ZEB2 Silent p.G342G 0.32 TCGA-EI-6917-01 2 145158787 145158787 C T ZEB2 Missense_Mutation p.E299K 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-EI-6917-01 2 14776016 14776016 G T FAM84A 3'UTR 0.15 TCGA-EI-6917-01 2 148677815 148677815 A C ACVR2A Missense_Mutation p.N327H 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 149447892 149447892 G A EPC2 Missense_Mutation p.R88H 0.23 tolerated(0.1) probably_damaging(0.953) TCGA-EI-6917-01 2 149544162 149544162 C A EPC2 3'UTR 0.33 TCGA-EI-6917-01 2 149793838 149793838 G A KIF5C Missense_Mutation p.R111Q 0.22 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 2 150071351 150071351 G A LYPD6B 3'UTR 0.30 TCGA-EI-6917-01 2 150426583 150426583 G A MMADHC Missense_Mutation p.R266C 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-EI-6917-01 2 152220522 152220522 G A TNFAIP6 Missense_Mutation p.A54T 0.25 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 2 152292041 152292041 C T RIF1 Missense_Mutation p.S381L 0.34 tolerated(0.09) benign(0.075) TCGA-EI-6917-01 2 152324517 152324517 C T RIF1 Missense_Mutation p.R2202C 0.22 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 2 152353466 152353466 T G NEB Missense_Mutation p.N8128H 0.08 possibly_damaging(0.844) TCGA-EI-6917-01 2 152363424 152363424 G A NEB Missense_Mutation p.S7852L 0.30 benign(0.35) TCGA-EI-6917-01 2 152383461 152383461 C T NEB Missense_Mutation p.A7306T 0.30 probably_damaging(1) TCGA-EI-6917-01 2 152387533 152387533 C T NEB Missense_Mutation p.R7202H 0.30 probably_damaging(0.947) TCGA-EI-6917-01 2 152396948 152396948 A C NEB Missense_Mutation p.I6934M 0.21 possibly_damaging(0.684) TCGA-EI-6917-01 2 152422118 152422118 A G NEB Missense_Mutation p.I6088T 0.19 benign(0.34) TCGA-EI-6917-01 2 152487673 152487673 G A NEB Missense_Mutation p.A3201V 0.19 possibly_damaging(0.851) TCGA-EI-6917-01 2 152531096 152531096 G T NEB Silent p.V1294V 0.45 TCGA-EI-6917-01 2 152531836 152531836 G T NEB Missense_Mutation p.L1282I 0.27 benign(0.035) TCGA-EI-6917-01 2 152554088 152554088 G A NEB Silent p.L409L 0.21 TCGA-EI-6917-01 2 152581465 152581465 C T NEB Missense_Mutation p.R138Q 0.22 probably_damaging(0.999) TCGA-EI-6917-01 2 152659733 152659733 T G ARL5A 3'UTR 0.21 TCGA-EI-6917-01 2 152711872 152711872 T G CACNB4 Missense_Mutation p.I296L 0.30 deleterious(0.04) probably_damaging(0.993) TCGA-EI-6917-01 2 152976961 152976961 T G STAM2 3'UTR 0.60 TCGA-EI-6917-01 2 153006733 153006733 C T STAM2 Silent p.T17T 0.15 TCGA-EI-6917-01 2 15307318 15307318 G A NBAS Missense_Mutation p.R2324C 0.26 tolerated(0.15) benign(0.004) TCGA-EI-6917-01 2 153504405 153504405 G A FMNL2 Missense_Mutation p.E1089K 0.30 unknown(0) TCGA-EI-6917-01 2 153575484 153575484 C T ARL6IP6 Missense_Mutation p.L116F 0.26 deleterious(0.02) possibly_damaging(0.816) TCGA-EI-6917-01 2 155157982 155157982 C T GALNT13 Missense_Mutation p.R346W 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 2 155157992 155157992 C T GALNT13 Missense_Mutation p.T349I 0.22 deleterious(0) benign(0.005) TCGA-EI-6917-01 2 155265539 155265539 G A GALNT13 Missense_Mutation p.R447H 0.20 deleterious(0.03) benign(0.115) TCGA-EI-6917-01 2 158142577 158142577 C T GALNT5 Missense_Mutation p.R558W 0.20 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 2 158177817 158177817 C A ERMN Missense_Mutation p.R287I 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 158395120 158395120 G A ACVR1C Nonsense_Mutation p.R441* 0.22 TCGA-EI-6917-01 2 158991498 158991498 C A UPP2 3'UTR 0.28 TCGA-EI-6917-01 2 159107423 159107423 A G CCDC148 Missense_Mutation p.V371A 0.09 deleterious(0.01) possibly_damaging(0.728) TCGA-EI-6917-01 2 160621138 160621138 T G MARCH7 Missense_Mutation p.F670C 0.19 deleterious(0) possibly_damaging(0.572) TCGA-EI-6917-01 2 160661611 160661611 G A LY75 Intron 0.24 TCGA-EI-6917-01 2 160667041 160667041 T C LY75-CD302 Silent p.K1565K 0.20 TCGA-EI-6917-01 2 162061356 162061356 G A TANK Intron 0.19 TCGA-EI-6917-01 2 162267823 162267823 G A PSMD14 Missense_Mutation p.R282H 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-EI-6917-01 2 162807212 162807212 C T SLC4A10 Missense_Mutation p.R799C 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 163250989 163250989 G T KCNH7 Missense_Mutation p.L874I 0.26 tolerated(0.69) benign(0.001) TCGA-EI-6917-01 2 164466486 164466486 G A FIGN Missense_Mutation p.S619L 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-EI-6917-01 2 1652918 1652918 G A PXDN Silent p.F878F 0.23 TCGA-EI-6917-01 2 165551579 165551579 C A COBLL1 Nonsense_Mutation p.E813* 0.23 TCGA-EI-6917-01 2 165947360 165947360 G A SCN3A Missense_Mutation p.A1768V 0.29 deleterious(0.03) probably_damaging(0.998) TCGA-EI-6917-01 2 166003532 166003532 G A SCN3A Missense_Mutation p.A463V 0.30 tolerated(0.17) probably_damaging(0.972) TCGA-EI-6917-01 2 166012313 166012313 G A SCN3A Nonsense_Mutation p.R378* 0.34 TCGA-EI-6917-01 2 166012346 166012346 C A SCN3A Missense_Mutation p.D367Y 0.25 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 2 1664781 1664781 T G PXDN Missense_Mutation p.K570T 0.36 deleterious(0) probably_damaging(0.969) TCGA-EI-6917-01 2 166535676 166535676 G T CSRNP3 Missense_Mutation p.D391Y 0.25 deleterious(0) possibly_damaging(0.758) TCGA-EI-6917-01 2 166900519 166900519 C T SCN1A Missense_Mutation p.R568Q 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-EI-6917-01 2 167322357 167322357 G A SCN7A Nonsense_Mutation p.R269* 0.20 TCGA-EI-6917-01 2 16743285 16743285 G A FAM49A Silent p.F141F 0.30 TCGA-EI-6917-01 2 168099253 168099253 G T XIRP2 Nonsense_Mutation p.E451* 0.26 TCGA-EI-6917-01 2 168101145 168101145 A G XIRP2 Silent p.E1081E 0.23 TCGA-EI-6917-01 2 168102391 168102391 C T XIRP2 Nonsense_Mutation p.R1497* 0.22 TCGA-EI-6917-01 2 168102656 168102656 A G XIRP2 Missense_Mutation p.Y1585C 0.22 probably_damaging(0.994) TCGA-EI-6917-01 2 168104980 168104980 T G XIRP2 Missense_Mutation p.S2360A 0.27 benign(0) TCGA-EI-6917-01 2 168105311 168105311 C T XIRP2 Missense_Mutation p.T2470I 0.24 benign(0.01) TCGA-EI-6917-01 2 169758972 169758972 G A G6PC2 Missense_Mutation p.R79Q 0.33 deleterious(0) probably_damaging(0.951) TCGA-EI-6917-01 2 169791766 169791766 G A ABCB11 Missense_Mutation p.A995V 0.20 tolerated(0.1) probably_damaging(0.937) TCGA-EI-6917-01 2 169996082 169996082 G A LRP2 Missense_Mutation p.A4413V 0.23 benign(0.193) TCGA-EI-6917-01 2 170028582 170028582 G A LRP2 Missense_Mutation p.R3736C 0.22 probably_damaging(1) TCGA-EI-6917-01 2 170062674 170062674 G A LRP2 Missense_Mutation p.A2472V 0.33 probably_damaging(0.999) TCGA-EI-6917-01 2 170097499 170097499 G C LRP2 Missense_Mutation p.C1348W 0.23 probably_damaging(0.999) TCGA-EI-6917-01 2 170361000 170361000 C T BBS5 Missense_Mutation p.R312C 0.28 deleterious(0) possibly_damaging(0.668) TCGA-EI-6917-01 2 170367020 170367020 C A KLHL41 Missense_Mutation p.S244R 0.19 tolerated(0.06) possibly_damaging(0.536) TCGA-EI-6917-01 2 170493462 170493462 G A PPIG Missense_Mutation p.R565Q 0.27 tolerated_low_confidence(0.09) unknown(0) TCGA-EI-6917-01 2 170537519 170537519 C T CCDC173 Missense_Mutation p.A98T 0.26 tolerated(0.16) benign(0.193) TCGA-EI-6917-01 2 170557905 170557905 C A PHOSPHO2 Missense_Mutation p.H142N 0.23 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 2 170591740 170591740 A G KLHL23 Silent p.E72E 0.31 TCGA-EI-6917-01 2 170667709 170667709 A C SSB Silent p.G338G 0.25 TCGA-EI-6917-01 2 170667781 170667781 G A SSB Silent p.T362T 0.19 TCGA-EI-6917-01 2 171248960 171248960 C T MYO3B Silent p.F582F 0.27 TCGA-EI-6917-01 2 171693345 171693345 T G GAD1 Missense_Mutation p.I197S 0.24 tolerated(0.12) probably_damaging(0.969) TCGA-EI-6917-01 2 172666130 172666130 G T SLC25A12 Missense_Mutation p.L431I 0.22 tolerated(0.45) benign(0.053) TCGA-EI-6917-01 2 172965582 172965582 C T DLX2 Missense_Mutation p.A226T 0.30 tolerated(0.08) benign(0.012) TCGA-EI-6917-01 2 173355819 173355819 C A ITGA6 Missense_Mutation p.S916Y 0.24 deleterious(0.03) possibly_damaging(0.89) TCGA-EI-6917-01 2 174820423 174820423 C T SP3 Missense_Mutation p.D273N 0.20 deleterious(0.03) probably_damaging(0.972) TCGA-EI-6917-01 2 175427234 175427234 G A WIPF1 3'UTR 0.31 TCGA-EI-6917-01 2 175427313 175427313 C A WIPF1 Nonsense_Mutation p.E492* 0.31 TCGA-EI-6917-01 2 175431896 175431896 C A WIPF1 Missense_Mutation p.R453I 0.24 deleterious(0) probably_damaging(0.962) TCGA-EI-6917-01 2 175440056 175440056 G A WIPF1 Silent p.G78G 0.41 TCGA-EI-6917-01 2 176946920 176946920 C T EVX2 Missense_Mutation p.E229K 0.40 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 176988145 176988145 G A HOXD9 Missense_Mutation p.A217T 0.29 tolerated(0.54) benign(0.053) TCGA-EI-6917-01 2 177016320 177016320 G T HOXD3 5'UTR 0.30 TCGA-EI-6917-01 2 177016375 177016375 C T HOXD4 Missense_Mutation p.S5L 0.25 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 2 177036522 177036522 C T HOXD3 Silent p.L273L 0.31 TCGA-EI-6917-01 2 178494002 178494002 C T PDE11A 3'UTR 0.50 TCGA-EI-6917-01 2 178534253 178534253 G A PDE11A Missense_Mutation p.R844W 0.25 deleterious(0.03) probably_damaging(0.993) TCGA-EI-6917-01 2 178545555 178545555 G A PDE11A Nonsense_Mutation p.R808* 0.31 TCGA-EI-6917-01 2 178762794 178762794 G A PDE11A Silent p.I431I 0.29 TCGA-EI-6917-01 2 178936835 178936835 C T PDE11A Silent p.G110G 0.19 TCGA-EI-6917-01 2 179238706 179238706 C A OSBPL6 Missense_Mutation p.F520L 0.27 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 2 179260240 179260240 G A OSBPL6 Missense_Mutation p.R945Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 179306416 179306416 T G PRKRA Missense_Mutation p.K177T 0.19 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 179350475 179350475 G A PLEKHA3 Missense_Mutation p.E50K 0.28 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 2 179397656 179397656 G A TTN Silent p.F34562F 0.27 TCGA-EI-6917-01 2 179403403 179403403 T C TTN Silent p.E33051E 0.22 TCGA-EI-6917-01 2 179415737 179415737 C T TTN Silent p.P30507P 0.21 TCGA-EI-6917-01 2 179424608 179424608 C T TTN Missense_Mutation p.E28751K 0.25 TCGA-EI-6917-01 2 179428405 179428405 G T TTN Missense_Mutation p.S27485Y 0.30 TCGA-EI-6917-01 2 179429332 179429332 C T TTN Missense_Mutation p.R27176H 0.16 TCGA-EI-6917-01 2 179429522 179429522 C T TTN Missense_Mutation p.E27113K 0.18 TCGA-EI-6917-01 2 179435390 179435390 G A TTN Nonsense_Mutation p.R25157* 0.19 TCGA-EI-6917-01 2 179436019 179436019 C T TTN Missense_Mutation p.R24947H 0.28 TCGA-EI-6917-01 2 179440906 179440906 G A TTN Missense_Mutation p.A23318V 0.36 TCGA-EI-6917-01 2 179442396 179442396 C A TTN Missense_Mutation p.K22919N 0.20 TCGA-EI-6917-01 2 179462477 179462477 C T TTN Missense_Mutation p.R19111Q 0.26 TCGA-EI-6917-01 2 179464106 179464106 G T TTN Missense_Mutation p.S18805Y 0.37 TCGA-EI-6917-01 2 179467105 179467105 G A TTN Missense_Mutation p.L18342F 0.22 TCGA-EI-6917-01 2 179473461 179473461 C A TTN Missense_Mutation p.R17426I 0.27 TCGA-EI-6917-01 2 179486042 179486042 C A TTN Nonsense_Mutation p.E15135* 0.29 TCGA-EI-6917-01 2 179486229 179486229 G A TTN Nonsense_Mutation p.R15108* 0.26 TCGA-EI-6917-01 2 179530180 179530180 T G TTN Missense_Mutation p.E11989D 0.25 TCGA-EI-6917-01 2 179546466 179546466 C A TTN Splice_Site p.X11032_splice 0.29 TCGA-EI-6917-01 2 179554604 179554604 T C TTN Silent p.K10594K 0.17 TCGA-EI-6917-01 2 179559606 179559607 - T TTN Frame_Shift_Ins p.I10433Nfs*2 0.16 TCGA-EI-6917-01 2 179574533 179574533 C A TTN Nonsense_Mutation p.E9505* 0.17 TCGA-EI-6917-01 2 179577695 179577695 T C TTN Silent p.P9019P 0.17 TCGA-EI-6917-01 2 179582446 179582446 G A TTN Silent p.G8385G 0.24 TCGA-EI-6917-01 2 179587193 179587193 G A TTN Nonsense_Mutation p.R7441* 0.28 TCGA-EI-6917-01 2 179590652 179590652 C A TTN Silent p.R6799R 0.19 TCGA-EI-6917-01 2 179613467 179613467 T - TTN Intron 0.20 TCGA-EI-6917-01 2 179614773 179614773 T G TTN Intron 0.28 TCGA-EI-6917-01 2 179615866 179615866 G T TTN Intron 0.23 TCGA-EI-6917-01 2 179638971 179638971 G A TTN Silent p.I2340I 0.30 TCGA-EI-6917-01 2 179639864 179639864 C T TTN Missense_Mutation p.A2192T 0.19 TCGA-EI-6917-01 2 179644582 179644582 G T TTN Intron 0.19 TCGA-EI-6917-01 2 179732885 179732885 C T CCDC141 Silent p.P814P 0.30 TCGA-EI-6917-01 2 179809283 179809283 C A CCDC141 Missense_Mutation p.E292D 0.23 deleterious(0.02) possibly_damaging(0.742) TCGA-EI-6917-01 2 180634402 180634402 C A ZNF385B Missense_Mutation p.E27D 0.34 deleterious(0.01) possibly_damaging(0.675) TCGA-EI-6917-01 2 180819703 180819703 A C CWC22 Missense_Mutation p.F506C 0.10 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 2 182360113 182360113 C T ITGA4 Missense_Mutation p.A452V 0.18 deleterious(0) probably_damaging(0.968) TCGA-EI-6917-01 2 183616503 183616503 C A DNAJC10 Missense_Mutation p.F475L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 183699570 183699570 C T FRZB 3'UTR 0.26 TCGA-EI-6917-01 2 183731065 183731065 G A FRZB Silent p.F72F 0.23 TCGA-EI-6917-01 2 183790318 183790318 G T NCKAP1 3'UTR 0.38 TCGA-EI-6917-01 2 183960324 183960324 C T DUSP19 Missense_Mutation p.R198C 0.25 deleterious(0.02) benign(0.022) TCGA-EI-6917-01 2 184016282 184016282 G A NUP35 Silent p.T148T 0.21 TCGA-EI-6917-01 2 185800648 185800648 G T ZNF804A Missense_Mutation p.E175D 0.19 deleterious(0.03) benign(0.133) TCGA-EI-6917-01 2 185802688 185802688 G T ZNF804A Missense_Mutation p.E855D 0.28 tolerated(0.05) benign(0.001) TCGA-EI-6917-01 2 187626818 187626818 G A FAM171B Silent p.T583T 0.37 TCGA-EI-6917-01 2 190323591 190323591 C T WDR75 Missense_Mutation p.R228C 0.14 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 190430301 190430301 A G SLC40A1 Missense_Mutation p.I180T 0.37 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 190593009 190593009 T C ANKAR Missense_Mutation p.V965A 0.25 deleterious(0.03) benign(0.145) TCGA-EI-6917-01 2 190636431 190636431 A C ORMDL1 3'UTR 0.38 TCGA-EI-6917-01 2 191379339 191379339 C T TMEM194B Missense_Mutation p.D265N 0.32 deleterious(0.01) benign(0.345) TCGA-EI-6917-01 2 191383683 191383683 C T TMEM194B Missense_Mutation p.R147Q 0.28 tolerated(0.22) benign(0.101) TCGA-EI-6917-01 2 191835308 191835308 G A STAT1 3'UTR 0.24 TCGA-EI-6917-01 2 192272911 192272911 G T MYO1B Missense_Mutation p.R876I 0.10 tolerated(0.15) benign(0.128) TCGA-EI-6917-01 2 192280871 192280871 C A MYO1B Missense_Mutation p.L1064I 0.24 tolerated(0.1) possibly_damaging(0.734) TCGA-EI-6917-01 2 192288799 192288799 C A MYO1B 3'UTR 0.23 TCGA-EI-6917-01 2 192701136 192701136 G A SDPR Missense_Mutation p.S264F 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 192815113 192815113 C A TMEFF2 Missense_Mutation p.R350I 0.27 deleterious(0) possibly_damaging(0.621) TCGA-EI-6917-01 2 192818486 192818486 C T TMEFF2 Missense_Mutation p.R316Q 0.18 tolerated(0.05) benign(0.325) TCGA-EI-6917-01 2 196545400 196545400 G T SLC39A10 Nonsense_Mutation p.E212* 0.24 TCGA-EI-6917-01 2 196636525 196636525 G A DNAH7 Silent p.F3764F 0.25 TCGA-EI-6917-01 2 196642563 196642563 G A DNAH7 Silent p.F3675F 0.22 TCGA-EI-6917-01 2 196723425 196723425 G A DNAH7 Missense_Mutation p.P2614S 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 196729159 196729159 G A DNAH7 Missense_Mutation p.S2407F 0.15 deleterious(0.01) possibly_damaging(0.855) TCGA-EI-6917-01 2 196786882 196786882 G A DNAH7 Nonsense_Mutation p.R1289* 0.31 TCGA-EI-6917-01 2 196825552 196825552 C T DNAH7 Missense_Mutation p.E775K 0.24 tolerated(0.47) benign(0.327) TCGA-EI-6917-01 2 197172757 197172757 T C HECW2 Silent p.V829V 0.22 TCGA-EI-6917-01 2 197656182 197656182 C A GTF3C3 Missense_Mutation p.E138D 0.23 tolerated(0.32) benign(0.145) TCGA-EI-6917-01 2 197735692 197735692 C A PGAP1 Missense_Mutation p.K580N 0.23 deleterious(0.01) possibly_damaging(0.71) TCGA-EI-6917-01 2 197767424 197767424 C T PGAP1 Missense_Mutation p.R231Q 0.50 tolerated(1) benign(0.001) TCGA-EI-6917-01 2 198273266 198273266 C T SF3B1 Missense_Mutation p.R315Q 0.25 tolerated(0.19) benign(0.08) TCGA-EI-6917-01 2 198283759 198283759 C T SF3B1 Intron 0.31 TCGA-EI-6917-01 2 198288627 198288627 C T SF3B1 Missense_Mutation p.D34N 0.20 tolerated_low_confidence(0.3) benign(0) TCGA-EI-6917-01 2 198324736 198324736 G A COQ10B Missense_Mutation p.R62Q 0.28 deleterious(0.04) possibly_damaging(0.836) TCGA-EI-6917-01 2 198353881 198353881 C T HSPD1 Missense_Mutation p.D354N 0.22 tolerated(0.12) probably_damaging(0.998) TCGA-EI-6917-01 2 198508985 198508985 G A RFTN2 Missense_Mutation p.S112L 0.25 tolerated(0.22) benign(0.01) TCGA-EI-6917-01 2 198593269 198593269 C T BOLL 3'UTR 0.30 TCGA-EI-6917-01 2 198949468 198949468 C A PLCL1 Silent p.I409I 0.30 TCGA-EI-6917-01 2 198950397 198950397 C A PLCL1 Missense_Mutation p.S719Y 0.30 deleterious(0.01) probably_damaging(0.984) TCGA-EI-6917-01 2 199011546 199011546 G T PLCL1 Nonsense_Mutation p.E1050* 0.27 TCGA-EI-6917-01 2 200213792 200213792 C T SATB2 Missense_Mutation p.E269K 0.27 tolerated(0.12) benign(0.043) TCGA-EI-6917-01 2 201436353 201436353 G T SGOL2 Missense_Mutation p.K428N 0.21 deleterious(0.02) possibly_damaging(0.517) TCGA-EI-6917-01 2 201502954 201502954 C T AOX1 Missense_Mutation p.R833C 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-EI-6917-01 2 201515700 201515700 C T AOX1 Nonsense_Mutation p.R951* 0.18 TCGA-EI-6917-01 2 201758064 201758064 G T NIF3L1 Missense_Mutation p.D178Y 0.25 deleterious(0.01) possibly_damaging(0.707) TCGA-EI-6917-01 2 20178610 20178610 C T WDR35 Missense_Mutation p.R113Q 0.60 deleterious(0) benign(0.442) TCGA-EI-6917-01 2 201881853 201881853 C T FAM126B Missense_Mutation p.R65H 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 202262225 202262225 G A TRAK2 Missense_Mutation p.R257C 0.19 deleterious(0.01) probably_damaging(0.922) TCGA-EI-6917-01 2 202466489 202466489 G A ALS2CR11 Silent p.F163F 0.27 TCGA-EI-6917-01 2 202492840 202492840 C T TMEM237 Missense_Mutation p.R301Q 0.53 deleterious(0.03) probably_damaging(1) TCGA-EI-6917-01 2 202626141 202626141 C T ALS2 Silent p.P192P 0.17 TCGA-EI-6917-01 2 202902627 202902627 T G FZD7 3'UTR 0.32 TCGA-EI-6917-01 2 202903012 202903012 A G FZD7 3'UTR 0.26 TCGA-EI-6917-01 2 203420113 203420113 A G BMPR2 Silent p.T575T 0.24 TCGA-EI-6917-01 2 203948200 203948200 T C NBEAL1 Missense_Mutation p.S315P 0.27 deleterious(0.03) possibly_damaging(0.905) TCGA-EI-6917-01 2 203972159 203972159 G T NBEAL1 Missense_Mutation p.R400I 0.13 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 204016260 204016260 G A NBEAL1 Silent p.P1816P 0.26 TCGA-EI-6917-01 2 204037515 204037515 C T NBEAL1 Nonsense_Mutation p.R2059* 0.23 TCGA-EI-6917-01 2 204131396 204131396 C A CYP20A1 Missense_Mutation p.H198N 0.18 deleterious(0.01) possibly_damaging(0.83) TCGA-EI-6917-01 2 204161636 204161636 T G CYP20A1 3'UTR 0.18 TCGA-EI-6917-01 2 204732640 204732640 G T CTLA4 5'UTR 0.25 TCGA-EI-6917-01 2 204820443 204820443 T C ICOS Missense_Mutation p.V48A 0.30 tolerated(0.1) benign(0.058) TCGA-EI-6917-01 2 207041995 207041995 G T GPR1 5'UTR 0.24 TCGA-EI-6917-01 2 207174288 207174288 G A ZDBF2 Missense_Mutation p.R1679Q 0.12 tolerated(1) benign(0.238) TCGA-EI-6917-01 2 207174561 207174561 G A ZDBF2 Missense_Mutation p.R1770K 0.21 tolerated(0.82) benign(0.067) TCGA-EI-6917-01 2 207175936 207175936 G A ZDBF2 Silent p.S2228S 0.20 TCGA-EI-6917-01 2 207346013 207346013 C A ADAM23 Missense_Mutation p.L164I 0.21 deleterious(0) possibly_damaging(0.672) TCGA-EI-6917-01 2 207530685 207530685 C A DYTN Missense_Mutation p.R350I 0.29 deleterious(0.05) benign(0.002) TCGA-EI-6917-01 2 207564929 207564929 G A DYTN Silent p.F165F 0.21 TCGA-EI-6917-01 2 207575323 207575323 C A DYTN Splice_Site p.X7_splice 0.15 TCGA-EI-6917-01 2 207619795 207619795 G A MDH1B Missense_Mutation p.A283V 0.29 deleterious(0) possibly_damaging(0.701) TCGA-EI-6917-01 2 207621686 207621686 C T MDH1B Missense_Mutation p.E117K 0.16 tolerated(0.13) benign(0.024) TCGA-EI-6917-01 2 207631715 207631715 G A FASTKD2 Missense_Mutation p.A100T 0.31 tolerated(0.23) benign(0.007) TCGA-EI-6917-01 2 207651563 207651563 C T FASTKD2 Missense_Mutation p.P512S 0.33 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 2 207834057 207834057 T C CPO Missense_Mutation p.L341P 0.18 deleterious(0) possibly_damaging(0.786) TCGA-EI-6917-01 2 210558855 210558855 C A MAP2 Missense_Mutation p.S654Y 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 210640757 210640757 C T UNC80 Nonsense_Mutation p.R96* 0.28 TCGA-EI-6917-01 2 210778617 210778617 C T UNC80 Missense_Mutation p.A1595V 0.46 benign(0.146) TCGA-EI-6917-01 2 210832292 210832292 C T UNC80 Missense_Mutation p.P2580L 0.24 probably_damaging(0.997) TCGA-EI-6917-01 2 210841657 210841657 G T UNC80 Missense_Mutation p.E2865D 0.17 benign(0.069) TCGA-EI-6917-01 2 211074934 211074934 G T ACADL Missense_Mutation p.L197I 0.23 tolerated(0.49) possibly_damaging(0.699) TCGA-EI-6917-01 2 211306067 211306067 C A LANCL1 Nonsense_Mutation p.G170* 0.26 TCGA-EI-6917-01 2 211502539 211502539 A C CPS1 Missense_Mutation p.K940T 0.24 deleterious(0.04) benign(0.006) TCGA-EI-6917-01 2 21228828 21228828 G A APOB Missense_Mutation p.R3638W 0.22 benign(0.002) TCGA-EI-6917-01 2 21232352 21232352 G A APOB Missense_Mutation p.A2463V 0.22 benign(0.004) TCGA-EI-6917-01 2 21235259 21235259 G A APOB Missense_Mutation p.S1494L 0.31 benign(0.006) TCGA-EI-6917-01 2 21235293 21235293 C A APOB Nonsense_Mutation p.E1483* 0.28 TCGA-EI-6917-01 2 21250796 21250796 C T APOB Silent p.G657G 0.31 TCGA-EI-6917-01 2 21250836 21250836 G A APOB Missense_Mutation p.S644F 0.25 possibly_damaging(0.661) TCGA-EI-6917-01 2 21251273 21251273 C A APOB Missense_Mutation p.Q585H 0.27 possibly_damaging(0.77) TCGA-EI-6917-01 2 212522689 212522689 G A ERBB4 Intron 0.20 TCGA-EI-6917-01 2 212812335 212812335 G A ERBB4 Nonsense_Mutation p.R81* 0.12 TCGA-EI-6917-01 2 213291063 213291063 C T ERBB4 Intron 0.19 TCGA-EI-6917-01 2 214174840 214174840 C A SPAG16 Missense_Mutation p.L113I 0.13 tolerated(0.47) benign(0.062) TCGA-EI-6917-01 2 215823110 215823110 C T ABCA12 Missense_Mutation p.S2003N 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 215846946 215846946 C T ABCA12 Missense_Mutation p.R1515Q 0.20 deleterious(0) possibly_damaging(0.631) TCGA-EI-6917-01 2 216809668 216809668 C T MREG Missense_Mutation p.R188Q 0.21 tolerated(0.46) benign(0.004) TCGA-EI-6917-01 2 216990662 216990662 G A XRCC5 Missense_Mutation p.V236I 0.14 tolerated(0.47) benign(0.001) TCGA-EI-6917-01 2 218925274 218925274 C T CXCR2P1 RNA 0.21 TCGA-EI-6917-01 2 219505438 219505438 A G ZNF142 Missense_Mutation p.Y1515H 0.38 deleterious(0) possibly_damaging(0.727) TCGA-EI-6917-01 2 219826483 219826483 C T CDK5R2 3'UTR 0.20 TCGA-EI-6917-01 2 220040383 220040383 C T CNPPD1 Missense_Mutation p.E64K 0.33 deleterious(0) possibly_damaging(0.588) TCGA-EI-6917-01 2 220075187 220075187 G A ABCB6 Missense_Mutation p.A756V 0.24 deleterious(0) possibly_damaging(0.784) TCGA-EI-6917-01 2 220089281 220089281 G A ATG9A Missense_Mutation p.A271V 0.13 tolerated(0.09) benign(0.111) TCGA-EI-6917-01 2 220092657 220092657 G A ATG9A Silent p.A30A 0.28 TCGA-EI-6917-01 2 220098051 220098051 C T ANKZF1 Missense_Mutation p.R239W 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 220329178 220329178 G A SPEG Missense_Mutation p.R910H 0.20 probably_damaging(0.991) TCGA-EI-6917-01 2 220329192 220329192 C T SPEG Missense_Mutation p.R915C 0.19 probably_damaging(0.993) TCGA-EI-6917-01 2 220356957 220356957 C T SPEG Nonsense_Mutation p.R3196* 0.38 TCGA-EI-6917-01 2 224462649 224462649 G A SCG2 Missense_Mutation p.S451L 0.29 tolerated(0.06) benign(0.129) TCGA-EI-6917-01 2 224743324 224743324 C T WDFY1 3'UTR 0.22 TCGA-EI-6917-01 2 224849570 224849570 G A SERPINE2 Silent p.S273S 0.23 TCGA-EI-6917-01 2 224876 224876 G T SH3YL1 Missense_Mutation p.H276N 0.27 tolerated(0.46) benign(0) TCGA-EI-6917-01 2 225669928 225669928 G A DOCK10 Missense_Mutation p.S1349L 0.19 deleterious(0) benign(0.273) TCGA-EI-6917-01 2 225672462 225672462 A G DOCK10 Missense_Mutation p.Y1209H 0.29 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 2 225738844 225738844 G A DOCK10 Missense_Mutation p.L376F 0.25 tolerated(1) benign(0.001) TCGA-EI-6917-01 2 226447360 226447360 G A NYAP2 Silent p.A409A 0.30 TCGA-EI-6917-01 2 227662601 227662601 C T IRS1 Missense_Mutation p.R285H 0.27 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 2 228754634 228754634 G A DAW1 Missense_Mutation p.R59Q 0.25 tolerated(0.3) benign(0.048) TCGA-EI-6917-01 2 228769657 228769657 G A DAW1 Missense_Mutation p.E221K 0.27 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 2 228881191 228881191 G A SPHKAP Missense_Mutation p.S1460L 0.36 tolerated(0.37) benign(0) TCGA-EI-6917-01 2 228881794 228881794 G T SPHKAP Missense_Mutation p.S1259Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 228882759 228882759 G A SPHKAP Silent p.V937V 0.24 TCGA-EI-6917-01 2 230312249 230312249 G A DNER Silent p.F423F 0.31 TCGA-EI-6917-01 2 230675656 230675656 G A TRIP12 Missense_Mutation p.R673C 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 230678742 230678742 A G TRIP12 Silent p.G562G 0.24 TCGA-EI-6917-01 2 231042332 231042332 G A SP110 Silent p.V504V 0.23 TCGA-EI-6917-01 2 231223842 231223842 A C SP140L Missense_Mutation p.K145T 0.27 tolerated(0.13) benign(0.01) TCGA-EI-6917-01 2 231406054 231406054 G A SP100 Silent p.S790S 0.19 TCGA-EI-6917-01 2 231865181 231865181 C T SPATA3 Silent p.F134F 0.23 TCGA-EI-6917-01 2 232070926 232070926 G A ARMC9 5'UTR 0.28 TCGA-EI-6917-01 2 232081351 232081351 G A ARMC9 Missense_Mutation p.D117N 0.36 tolerated(0.1) probably_damaging(0.962) TCGA-EI-6917-01 2 233412952 233412952 C T TIGD1 Silent p.P547P 0.20 TCGA-EI-6917-01 2 233428977 233428977 T G EIF4E2 Missense_Mutation p.F97L 0.19 tolerated(0.55) benign(0.005) TCGA-EI-6917-01 2 233527636 233527636 G A EFHD1 Missense_Mutation p.D143N 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 233633473 233633473 G A KCNJ13 Missense_Mutation p.R171C 0.27 deleterious(0.03) possibly_damaging(0.462) TCGA-EI-6917-01 2 233839419 233839419 C A NGEF Missense_Mutation p.R61I 0.24 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EI-6917-01 2 234079182 234079182 A G INPP5D Missense_Mutation p.Y599C 0.10 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 2 234224745 234224745 G T SAG Missense_Mutation p.D34Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 2 234526837 234526837 T G UGT1A8 Missense_Mutation p.S162A 0.23 tolerated(0.14) possibly_damaging(0.859) TCGA-EI-6917-01 2 234580708 234580708 C T UGT1A9 Missense_Mutation p.S43L 0.33 tolerated(0.32) benign(0.032) TCGA-EI-6917-01 2 234581341 234581341 G A UGT1A9 Missense_Mutation p.R254Q 0.20 deleterious(0.01) possibly_damaging(0.903) TCGA-EI-6917-01 2 234878867 234878867 G A TRPM8 Missense_Mutation p.D718N 0.23 tolerated(0.42) benign(0.004) TCGA-EI-6917-01 2 234879000 234879000 C T TRPM8 Missense_Mutation p.S762L 0.25 tolerated(0.14) benign(0.001) TCGA-EI-6917-01 2 234888922 234888922 C T TRPM8 Missense_Mutation p.R816W 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 237405953 237405953 G A IQCA1 Silent p.F63F 0.20 TCGA-EI-6917-01 2 238244918 238244918 G A COL6A3 Missense_Mutation p.A2942V 0.24 unknown(0) TCGA-EI-6917-01 2 238247686 238247686 T C COL6A3 Missense_Mutation p.N2847D 0.42 unknown(0) TCGA-EI-6917-01 2 238289953 238289953 G A COL6A3 Missense_Mutation p.T501I 0.23 probably_damaging(0.959) TCGA-EI-6917-01 2 238449473 238449473 G A MLPH Missense_Mutation p.R440K 0.24 tolerated(0.99) benign(0.065) TCGA-EI-6917-01 2 238726304 238726304 G A RBM44 Missense_Mutation p.D249N 0.16 tolerated(0.09) probably_damaging(0.958) TCGA-EI-6917-01 2 239013395 239013395 G A ESPNL Missense_Mutation p.G195D 0.21 deleterious(0.02) possibly_damaging(0.886) TCGA-EI-6917-01 2 239140755 239140755 G A AC016757.3 5'Flank 0.25 TCGA-EI-6917-01 2 239142257 239142257 C T HES6 3'Flank 0.27 TCGA-EI-6917-01 2 23916296 23916296 C A KLHL29 Missense_Mutation p.F480L 0.33 tolerated(1) benign(0.006) TCGA-EI-6917-01 2 239757114 239757114 C T TWIST2 Silent p.F86F 0.19 TCGA-EI-6917-01 2 239757124 239757124 C T TWIST2 Missense_Mutation p.R90C 0.19 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 2 24042747 24042747 C T ATAD2B Missense_Mutation p.E713K 0.22 tolerated(0.7) benign(0.009) TCGA-EI-6917-01 2 240984668 240984668 G T OR6B3 Silent p.I274I 0.27 TCGA-EI-6917-01 2 241657571 241657571 G A KIF1A Silent p.F1743F 0.25 TCGA-EI-6917-01 2 242206238 242206238 C T HDLBP Missense_Mutation p.R16Q 0.25 tolerated_low_confidence(0.12) probably_damaging(0.957) TCGA-EI-6917-01 2 242590689 242590689 G A ATG4B Silent p.E41E 0.34 TCGA-EI-6917-01 2 24261684 24261684 C A C2orf44 Missense_Mutation p.K227N 0.18 tolerated(0.06) probably_damaging(0.951) TCGA-EI-6917-01 2 242757599 242757599 C T NEU4 Missense_Mutation p.A240V 0.33 tolerated(0.48) benign(0.018) TCGA-EI-6917-01 2 24347295 24347295 G T FAM228B Nonsense_Mutation p.E22* 0.25 TCGA-EI-6917-01 2 25037316 25037316 G T CENPO Missense_Mutation p.E96D 0.27 tolerated(0.13) benign(0.048) TCGA-EI-6917-01 2 25982502 25982502 C A ASXL2 Missense_Mutation p.R263I 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 26152927 26152927 C T KIF3C Missense_Mutation p.S671N 0.15 benign(0) TCGA-EI-6917-01 2 26179303 26179303 C T KIF3C Missense_Mutation p.S519N 0.12 benign(0.056) TCGA-EI-6917-01 2 26204331 26204331 C A KIF3C Missense_Mutation p.E152D 0.26 possibly_damaging(0.605) TCGA-EI-6917-01 2 26496563 26496563 A G HADHB Missense_Mutation p.Y100C 0.19 deleterious(0.01) probably_damaging(0.98) TCGA-EI-6917-01 2 26540402 26540402 C T GPR113 Missense_Mutation p.G107E 0.28 tolerated_low_confidence(0.38) benign(0) TCGA-EI-6917-01 2 26597915 26597915 C T EPT1 Missense_Mutation p.S194F 0.15 tolerated(0.09) probably_damaging(0.997) TCGA-EI-6917-01 2 26611956 26611956 G T EPT1 Missense_Mutation p.K393N 0.20 tolerated_low_confidence(0.14) benign(0.005) TCGA-EI-6917-01 2 26683029 26683029 G A OTOF Missense_Mutation p.S1953L 0.23 deleterious(0.03) possibly_damaging(0.604) TCGA-EI-6917-01 2 27150208 27150208 C T DPYSL5 Nonsense_Mutation p.R170* 0.17 TCGA-EI-6917-01 2 27375574 27375574 C T TCF23 Missense_Mutation p.R162C 0.18 deleterious(0) possibly_damaging(0.908) TCGA-EI-6917-01 2 27459350 27459350 C T CAD Missense_Mutation p.P1425S 0.35 tolerated(0.05) probably_damaging(0.912) TCGA-EI-6917-01 2 27604495 27604495 C T PPM1G Missense_Mutation p.D538N 0.19 tolerated_low_confidence(0.83) benign(0.081) TCGA-EI-6917-01 2 27700428 27700428 T C IFT172 Missense_Mutation p.N407D 0.31 tolerated(0.28) benign(0.169) TCGA-EI-6917-01 2 27715319 27715319 G A FNDC4 Silent p.I232I 0.25 TCGA-EI-6917-01 2 27800509 27800509 G A C2orf16 Missense_Mutation p.R357Q 0.30 tolerated(1) benign(0.006) TCGA-EI-6917-01 2 27802328 27802328 T C C2orf16 Silent p.H963H 0.30 TCGA-EI-6917-01 2 27892242 27892242 C T SLC4A1AP Missense_Mutation p.R445W 0.36 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 2 27930725 27930725 C T AC074091.13 Missense_Mutation p.R103Q 0.17 benign(0.417) TCGA-EI-6917-01 2 29754810 29754810 G A ALK Silent p.I375I 0.21 TCGA-EI-6917-01 2 30381662 30381662 C T YPEL5 Nonsense_Mutation p.R107* 0.41 TCGA-EI-6917-01 2 30756143 30756143 T G LCLAT1 Missense_Mutation p.I147M 0.23 deleterious(0) possibly_damaging(0.734) TCGA-EI-6917-01 2 30993313 30993313 G T CAPN13 Missense_Mutation p.F130L 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 31147655 31147655 G A GALNT14 Missense_Mutation p.R401C 0.18 deleterious(0.01) possibly_damaging(0.764) TCGA-EI-6917-01 2 32422820 32422820 G A SLC30A6 Missense_Mutation p.R237Q 0.25 deleterious(0) probably_damaging(0.967) TCGA-EI-6917-01 2 32476623 32476623 C T NLRC4 Missense_Mutation p.D104N 0.30 tolerated(0.33) benign(0.003) TCGA-EI-6917-01 2 32477620 32477620 C T NLRC4 Missense_Mutation p.E44K 0.28 tolerated(0.43) benign(0.012) TCGA-EI-6917-01 2 32530821 32530821 C T YIPF4 3'UTR 0.44 TCGA-EI-6917-01 2 32656134 32656134 G A BIRC6 Missense_Mutation p.R1075Q 0.41 probably_damaging(0.978) TCGA-EI-6917-01 2 32690221 32690221 G A BIRC6 Missense_Mutation p.R1782Q 0.20 probably_damaging(0.96) TCGA-EI-6917-01 2 32696179 32696179 G T BIRC6 Missense_Mutation p.K2193N 0.26 possibly_damaging(0.813) TCGA-EI-6917-01 2 32702649 32702649 A G BIRC6 Missense_Mutation p.K2356E 0.27 probably_damaging(0.98) TCGA-EI-6917-01 2 32704532 32704532 G A BIRC6 Missense_Mutation p.E2419K 0.21 possibly_damaging(0.523) TCGA-EI-6917-01 2 32733143 32733143 A C BIRC6 Missense_Mutation p.K3266T 0.24 probably_damaging(0.931) TCGA-EI-6917-01 2 32740529 32740529 G A BIRC6 Missense_Mutation p.D3681N 0.31 possibly_damaging(0.526) TCGA-EI-6917-01 2 33359767 33359767 C A LTBP1 Intron 0.33 TCGA-EI-6917-01 2 33468851 33468851 C T LTBP1 Missense_Mutation p.P667S 0.28 tolerated(0.3) benign(0.085) TCGA-EI-6917-01 2 33745024 33745024 G A RASGRP3 Missense_Mutation p.R60Q 0.25 tolerated(0.85) benign(0.005) TCGA-EI-6917-01 2 33809767 33809767 A C FAM98A 3'UTR 0.19 TCGA-EI-6917-01 2 33810694 33810694 G T FAM98A Missense_Mutation p.S264Y 0.24 deleterious(0) probably_damaging(0.964) TCGA-EI-6917-01 2 33952147 33952147 G A AC009499.1 Intron 0.21 TCGA-EI-6917-01 2 36808551 36808551 C T FEZ2 Missense_Mutation p.M172I 0.31 tolerated(0.05) benign(0.053) TCGA-EI-6917-01 2 37267646 37267646 A G HEATR5B Missense_Mutation p.S958P 0.18 deleterious(0) probably_damaging(0.962) TCGA-EI-6917-01 2 37487391 37487391 C T PRKD3 Missense_Mutation p.R674Q 0.28 deleterious(0) probably_damaging(0.96) TCGA-EI-6917-01 2 39046076 39046076 G A DHX57 Silent p.G1138G 0.25 TCGA-EI-6917-01 2 39180302 39180302 G A ARHGEF33 Splice_Site p.X352_splice 0.11 TCGA-EI-6917-01 2 39250095 39250095 C T SOS1 Missense_Mutation p.E492K 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 39251178 39251178 G A SOS1 Missense_Mutation p.S392F 0.29 deleterious(0.01) benign(0.086) TCGA-EI-6917-01 2 39281838 39281838 G A SOS1 Nonsense_Mutation p.R213* 0.27 TCGA-EI-6917-01 2 39487779 39487779 G T MAP4K3 Missense_Mutation p.P759Q 0.19 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 2 40655708 40655708 G A SLC8A1 Silent p.I571I 0.17 TCGA-EI-6917-01 2 40656469 40656469 C A SLC8A1 Missense_Mutation p.D318Y 0.34 deleterious(0) probably_damaging(0.928) TCGA-EI-6917-01 2 42671056 42671056 G T KCNG3 3'UTR 0.24 TCGA-EI-6917-01 2 42990337 42990337 C T OXER1 Missense_Mutation p.R328Q 0.29 tolerated(0.27) benign(0.01) TCGA-EI-6917-01 2 43919761 43919761 G T PLEKHH2 Missense_Mutation p.D99Y 0.27 deleterious(0) benign(0.254) TCGA-EI-6917-01 2 43927553 43927553 G T PLEKHH2 Nonsense_Mutation p.E486* 0.19 TCGA-EI-6917-01 2 43937465 43937465 C A PLEKHH2 Missense_Mutation p.S737Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 2 43992805 43992805 C T PLEKHH2 3'UTR 0.81 TCGA-EI-6917-01 2 44037081 44037081 G T DYNC2LI1 3'UTR 0.30 TCGA-EI-6917-01 2 44513207 44513207 G A SLC3A1 Missense_Mutation p.E268K 0.31 tolerated(0.11) possibly_damaging(0.448) TCGA-EI-6917-01 2 46808380 46808380 T G RHOQ 3'UTR 0.21 TCGA-EI-6917-01 2 46987060 46987060 C T SOCS5 Missense_Mutation p.S464L 0.23 tolerated(0.14) benign(0.122) TCGA-EI-6917-01 2 47135055 47135055 G A MCFD2 Missense_Mutation p.S68L 0.28 deleterious(0.01) possibly_damaging(0.7) TCGA-EI-6917-01 2 47643566 47643566 G T MSH2 Missense_Mutation p.E358D 0.27 tolerated(0.08) benign(0.438) TCGA-EI-6917-01 2 47657021 47657021 G A MSH2 Missense_Mutation p.R406Q 0.25 tolerated(0.06) benign(0.029) TCGA-EI-6917-01 2 48026412 48026412 G A MSH6 Silent p.G430G 0.21 TCGA-EI-6917-01 2 48030689 48030689 G T MSH6 Missense_Mutation p.K1101N 0.27 tolerated(0.05) benign(0.083) TCGA-EI-6917-01 2 48808421 48808421 G A STON1-GTF2A1L Missense_Mutation p.D217N 0.19 tolerated(0.07) benign(0.411) TCGA-EI-6917-01 2 48874014 48874014 G A STON1-GTF2A1L Missense_Mutation p.A975T 0.20 tolerated(0.98) benign(0) TCGA-EI-6917-01 2 48906547 48906547 T C STON1-GTF2A1L Missense_Mutation p.V1172A 0.22 deleterious(0.03) possibly_damaging(0.863) TCGA-EI-6917-01 2 48915267 48915267 C A LHCGR Nonsense_Mutation p.E557* 0.24 TCGA-EI-6917-01 2 49190054 49190054 C T FSHR Missense_Mutation p.D636N 0.33 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 2 49190792 49190792 T G FSHR Missense_Mutation p.S390R 0.22 deleterious(0) probably_damaging(0.976) TCGA-EI-6917-01 2 50848344 50848344 G A NRXN1 Missense_Mutation p.S426L 0.26 tolerated(0.38) benign(0.001) TCGA-EI-6917-01 2 50850567 50850567 A C NRXN1 Missense_Mutation p.V373G 0.30 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 2 54482298 54482298 G A TSPYL6 Missense_Mutation p.R331C 0.22 deleterious(0.02) probably_damaging(0.959) TCGA-EI-6917-01 2 55056523 55056523 T C EML6 Silent p.T252T 0.30 TCGA-EI-6917-01 2 55077127 55077127 G T EML6 Missense_Mutation p.D406Y 0.22 deleterious(0) possibly_damaging(0.899) TCGA-EI-6917-01 2 55090984 55090984 C A EML6 Missense_Mutation p.D630E 0.26 tolerated(0.07) probably_damaging(0.977) TCGA-EI-6917-01 2 55122439 55122439 C T EML6 Missense_Mutation p.R962C 0.25 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 2 55470626 55470626 C A MTIF2 Missense_Mutation p.R497I 0.26 tolerated(0.09) benign(0.001) TCGA-EI-6917-01 2 55523486 55523486 G A CCDC88A Nonsense_Mutation p.R1666* 0.20 TCGA-EI-6917-01 2 55646210 55646210 C T CCDC88A Silent p.E2E 0.18 TCGA-EI-6917-01 2 55764677 55764677 A C CCDC104 Missense_Mutation p.N199T 0.27 tolerated(0.54) benign(0) TCGA-EI-6917-01 2 55791602 55791602 G A SMEK2 Missense_Mutation p.R703C 0.28 tolerated(0.36) possibly_damaging(0.893) TCGA-EI-6917-01 2 56097896 56097896 G A EFEMP1 Missense_Mutation p.R427W 0.18 deleterious(0) possibly_damaging(0.66) TCGA-EI-6917-01 2 5837786 5837786 C T SOX11 3'UTR 0.16 TCGA-EI-6917-01 2 5839383 5839383 G T SOX11 3'UTR 0.12 TCGA-EI-6917-01 2 5840441 5840441 G T SOX11 3'UTR 0.25 TCGA-EI-6917-01 2 61169313 61169313 G T PUS10 3'UTR 0.50 TCGA-EI-6917-01 2 61297492 61297492 C T KIAA1841 Missense_Mutation p.R3C 0.29 deleterious_low_confidence(0) benign(0.002) TCGA-EI-6917-01 2 61361370 61361370 G A KIAA1841 3'UTR 0.33 TCGA-EI-6917-01 2 61415163 61415163 A C AHSA2 3'UTR 0.32 TCGA-EI-6917-01 2 61493290 61493290 C A USP34 Missense_Mutation p.D1816Y 0.12 deleterious(0.02) benign(0.155) TCGA-EI-6917-01 2 61552564 61552564 G A USP34 Missense_Mutation p.R987C 0.19 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 2 61706027 61706027 C A XPO1 Missense_Mutation p.E1048D 0.15 tolerated(0.22) benign(0.002) TCGA-EI-6917-01 2 61719472 61719472 C T XPO1 Missense_Mutation p.E571K 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 62449732 62449732 G A B3GNT2 Missense_Mutation p.R126H 0.23 deleterious(0) probably_damaging(0.932) TCGA-EI-6917-01 2 62450491 62450491 A C B3GNT2 Missense_Mutation p.K379T 0.13 tolerated(1) benign(0.011) TCGA-EI-6917-01 2 62729610 62729610 G A TMEM17 Missense_Mutation p.R94W 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 63272158 63272158 C T EHBP1 Intron 0.29 TCGA-EI-6917-01 2 64321776 64321776 C T PELI1 3'UTR 0.32 TCGA-EI-6917-01 2 65473737 65473737 G A ACTR2 Missense_Mutation p.R85Q 0.28 tolerated(0.42) benign(0.442) TCGA-EI-6917-01 2 65495729 65495729 G A ACTR2 Missense_Mutation p.R354H 0.24 deleterious(0.03) possibly_damaging(0.558) TCGA-EI-6917-01 2 67626325 67626325 C T ETAA1 Missense_Mutation p.A83V 0.15 tolerated(1) benign(0) TCGA-EI-6917-01 2 68765077 68765077 G T APLF Missense_Mutation p.R293I 0.16 deleterious(0.01) possibly_damaging(0.794) TCGA-EI-6917-01 2 69098402 69098402 G A BMP10 Missense_Mutation p.S30F 0.24 tolerated(0.15) probably_damaging(0.909) TCGA-EI-6917-01 2 70162550 70162550 C T MXD1 Nonsense_Mutation p.R91* 0.20 TCGA-EI-6917-01 2 7018212 7018212 C A RSAD2 Missense_Mutation p.A94D 0.22 tolerated(0.11) benign(0.168) TCGA-EI-6917-01 2 70315689 70315689 G T PCBP1 Missense_Mutation p.A272S 0.35 tolerated(0.48) benign(0.013) TCGA-EI-6917-01 2 70504261 70504261 T G PCYOX1 Missense_Mutation p.L419V 0.29 tolerated(0.18) benign(0.158) TCGA-EI-6917-01 2 70780938 70780938 C T TGFA 5'UTR 0.15 TCGA-EI-6917-01 2 70933449 70933449 T C ADD2 Missense_Mutation p.Y31C 0.20 deleterious(0) possibly_damaging(0.707) TCGA-EI-6917-01 2 71058931 71058931 G A CD207 Missense_Mutation p.A246V 0.27 tolerated(0.13) possibly_damaging(0.457) TCGA-EI-6917-01 2 71206395 71206395 C T ANKRD53 Silent p.F113F 0.30 TCGA-EI-6917-01 2 71653632 71653632 G A ZNF638 Missense_Mutation p.D1545N 0.21 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 2 71894523 71894523 A C DYSF Missense_Mutation p.N1779H 0.36 tolerated(1) benign(0.03) TCGA-EI-6917-01 2 72374870 72374870 G A CYP26B1 Silent p.L32L 0.50 TCGA-EI-6917-01 2 72406547 72406547 G A EXOC6B Missense_Mutation p.R785W 0.18 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 2 72722605 72722605 C A EXOC6B Nonsense_Mutation p.E503* 0.29 TCGA-EI-6917-01 2 72742212 72742212 C T EXOC6B Missense_Mutation p.R320Q 0.14 tolerated(0.12) probably_damaging(0.984) TCGA-EI-6917-01 2 73315233 73315233 C T RAB11FIP5 Missense_Mutation p.A505T 0.45 tolerated(0.49) benign(0.002) TCGA-EI-6917-01 2 73651845 73651845 G A ALMS1 Missense_Mutation p.R351Q 0.30 benign(0.001) TCGA-EI-6917-01 2 73800418 73800418 G A ALMS1 Missense_Mutation p.R3804Q 0.29 benign(0.239) TCGA-EI-6917-01 2 73900944 73900944 C T ALMS1P RNA 0.21 TCGA-EI-6917-01 2 74043361 74043361 C T C2orf78 Missense_Mutation p.L671F 0.24 tolerated(0.1) benign(0.009) TCGA-EI-6917-01 2 74650452 74650452 G A WDR54 Missense_Mutation p.E98K 0.25 deleterious(0.03) probably_damaging(0.988) TCGA-EI-6917-01 2 74719416 74719416 T G TTC31 Intron 0.25 TCGA-EI-6917-01 2 74785974 74785974 G A M1AP Nonsense_Mutation p.R488* 0.22 TCGA-EI-6917-01 2 76975989 76975989 G A LRRTM4 Silent p.I535I 0.24 TCGA-EI-6917-01 2 77746415 77746415 G A LRRTM4 Nonsense_Mutation p.R194* 0.32 TCGA-EI-6917-01 2 80801321 80801321 C T CTNNA2 Missense_Mutation p.A592V 0.20 tolerated(0.26) benign(0.088) TCGA-EI-6917-01 2 80874759 80874759 C T CTNNA2 Missense_Mutation p.A827V 0.39 deleterious(0) possibly_damaging(0.856) TCGA-EI-6917-01 2 84658736 84658736 C T SUCLG1 Missense_Mutation p.E241K 0.15 tolerated(0.39) benign(0.032) TCGA-EI-6917-01 2 84861751 84861751 G A DNAH6 Missense_Mutation p.A1547T 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 85276557 85276557 G A KCMF1 Missense_Mutation p.A224T 0.23 tolerated(0.42) benign(0.121) TCGA-EI-6917-01 2 85617870 85617870 C A ELMOD3 3'UTR 0.22 TCGA-EI-6917-01 2 86437729 86437729 C T MRPL35 Nonsense_Mutation p.R169* 0.26 TCGA-EI-6917-01 2 86444214 86444214 C T REEP1 3'UTR 0.26 TCGA-EI-6917-01 2 86677052 86677052 A C KDM3A Missense_Mutation p.E103D 0.21 tolerated(0.51) benign(0.085) TCGA-EI-6917-01 2 86705354 86705354 G A KDM3A Silent p.E718E 0.28 TCGA-EI-6917-01 2 86711224 86711224 G A KDM3A Missense_Mutation p.E1013K 0.25 tolerated(0.16) probably_damaging(0.993) TCGA-EI-6917-01 2 86716772 86716772 T G KDM3A Missense_Mutation p.F1188C 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 88751460 88751460 G A FOXI3 RNA 0.23 TCGA-EI-6917-01 2 89278042 89278042 C T IGKV3-7 Missense_Mutation p.S98N 0.31 tolerated(0.33) benign(0.015) TCGA-EI-6917-01 2 8957817 8957817 C T KIDINS220 Silent p.S79S 0.13 TCGA-EI-6917-01 2 9098719 9098719 C T MBOAT2 Missense_Mutation p.R43Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 9498912 9498912 G A ASAP2 Missense_Mutation p.G452D 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 2 95522818 95522818 C T ANKRD20A8P RNA 0.20 TCGA-EI-6917-01 2 95540630 95540630 C T TEKT4 Missense_Mutation p.R275C 0.24 tolerated(0.05) possibly_damaging(0.901) TCGA-EI-6917-01 2 95941719 95941719 C T PROM2 Silent p.I112I 0.23 TCGA-EI-6917-01 2 96525775 96525775 T G ANKRD36C Silent p.R271R 0.10 TCGA-EI-6917-01 2 96919598 96919598 G A TMEM127 Missense_Mutation p.A222V 0.29 tolerated(0.69) benign(0.005) TCGA-EI-6917-01 2 96956091 96956091 G A SNRNP200 Silent p.I905I 0.28 TCGA-EI-6917-01 2 97019929 97019929 G A NCAPH Silent p.S337S 0.33 TCGA-EI-6917-01 2 97261198 97261198 C T KANSL3 3'UTR 0.36 TCGA-EI-6917-01 2 97279232 97279232 T G KANSL3 Missense_Mutation p.N263T 0.25 tolerated(0.15) possibly_damaging(0.6) TCGA-EI-6917-01 2 97808561 97808561 A C ANKRD36 Missense_Mutation p.K297T 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.775) TCGA-EI-6917-01 2 97810406 97810406 G A ANKRD36 Silent p.S320S 0.30 TCGA-EI-6917-01 2 98340881 98340881 C T ZAP70 Missense_Mutation p.R128C 0.33 deleterious(0) probably_damaging(0.92) TCGA-EI-6917-01 2 98351096 98351096 G A ZAP70 Missense_Mutation p.D335N 0.31 tolerated(0.28) benign(0.017) TCGA-EI-6917-01 2 98504548 98504548 C T TMEM131 Missense_Mutation p.R109Q 0.24 tolerated(0.1) probably_damaging(0.994) TCGA-EI-6917-01 2 98846533 98846533 C T VWA3B Missense_Mutation p.S724F 0.28 deleterious(0) benign(0.062) TCGA-EI-6917-01 2 99012494 99012494 C A CNGA3 Missense_Mutation p.F287L 0.31 deleterious(0.04) probably_damaging(0.977) TCGA-EI-6917-01 2 99182228 99182228 C T INPP4A Missense_Mutation p.R765C 0.12 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 2 99216997 99216997 C T COA5 3'UTR 0.30 TCGA-EI-6917-01 2 99220597 99220597 C T COA5 Missense_Mutation p.A53T 0.23 tolerated(0.86) benign(0.007) TCGA-EI-6917-01 2 99998633 99998633 G T EIF5B Missense_Mutation p.E691D 0.18 benign(0.03) TCGA-EI-6917-01 3 100387851 100387851 T G GPR128 Missense_Mutation p.F680V 0.22 deleterious(0.01) probably_damaging(0.94) TCGA-EI-6917-01 3 100962984 100962984 C T IMPG2 Missense_Mutation p.A731T 0.25 tolerated(0.51) benign(0.01) TCGA-EI-6917-01 3 101047523 101047523 G A SENP7 Missense_Mutation p.S921L 0.26 tolerated(0.3) benign(0.004) TCGA-EI-6917-01 3 101056434 101056434 C T SENP7 Missense_Mutation p.R800Q 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 10342693 10342693 A C SEC13 3'UTR 0.31 TCGA-EI-6917-01 3 10413530 10413530 G A ATP2B2 Missense_Mutation p.A541V 0.32 deleterious(0.02) benign(0.226) TCGA-EI-6917-01 3 10426999 10426999 G A ATP2B2 Missense_Mutation p.A318V 0.33 tolerated(0.26) benign(0.435) TCGA-EI-6917-01 3 105268991 105268991 T G ALCAM Missense_Mutation p.I465M 0.22 tolerated(0.06) benign(0.098) TCGA-EI-6917-01 3 105572494 105572494 T G CBLB Missense_Mutation p.Q61H 0.27 deleterious(0.02) probably_damaging(0.984) TCGA-EI-6917-01 3 105586436 105586436 C A CBLB Splice_Site 0.12 TCGA-EI-6917-01 3 108174599 108174599 C T MYH15 Missense_Mutation p.R769Q 0.25 tolerated(0.22) benign(0.013) TCGA-EI-6917-01 3 108298513 108298513 C T KIAA1524 Missense_Mutation p.R191Q 0.20 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 3 10865006 10865006 G T SLC6A11 Missense_Mutation p.Q184H 0.29 tolerated(0.61) possibly_damaging(0.793) TCGA-EI-6917-01 3 109031444 109031444 G A DPPA2 Silent p.S43S 0.19 TCGA-EI-6917-01 3 109031479 109031479 T C DPPA2 Missense_Mutation p.K32E 0.22 tolerated(0.59) benign(0.265) TCGA-EI-6917-01 3 10916654 10916654 C T SLC6A11 Silent p.Y255Y 0.28 TCGA-EI-6917-01 3 11072877 11072877 C A SLC6A1 Silent p.V446V 0.17 TCGA-EI-6917-01 3 11078583 11078583 C T SLC6A1 Silent p.I577I 0.33 TCGA-EI-6917-01 3 111298035 111298035 C T CD96 Silent p.V251V 0.17 TCGA-EI-6917-01 3 111439648 111439648 C T PLCXD2 Intron 0.22 TCGA-EI-6917-01 3 111603806 111603806 C T PHLDB2 Silent p.S294S 0.18 TCGA-EI-6917-01 3 111760811 111760811 C T TMPRSS7 Missense_Mutation p.R3C 0.14 deleterious(0.04) benign(0.107) TCGA-EI-6917-01 3 111997692 111997692 C T SLC9C1 Missense_Mutation p.A68T 0.33 tolerated(0.39) benign(0.221) TCGA-EI-6917-01 3 112066477 112066477 G A CD200 Missense_Mutation p.R190H 0.26 deleterious(0.03) possibly_damaging(0.897) TCGA-EI-6917-01 3 112335674 112335674 G T CCDC80 Missense_Mutation p.S735Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 3 112546321 112546321 G A CD200R1L Missense_Mutation p.S108L 0.27 tolerated(0.42) benign(0.003) TCGA-EI-6917-01 3 112727124 112727124 C T C3orf17 Missense_Mutation p.A377T 0.26 deleterious(0) probably_damaging(0.956) TCGA-EI-6917-01 3 113187238 113187238 C T SPICE1 Silent p.P301P 0.21 TCGA-EI-6917-01 3 113325892 113325892 T C SIDT1 Missense_Mutation p.V470A 0.34 deleterious(0.02) benign(0.068) TCGA-EI-6917-01 3 113374540 113374540 G A KIAA2018 Missense_Mutation p.R1997C 0.29 probably_damaging(0.999) TCGA-EI-6917-01 3 113375203 113375203 G A KIAA2018 Nonsense_Mutation p.R1776* 0.30 TCGA-EI-6917-01 3 113655209 113655209 G A GRAMD1C Missense_Mutation p.R518Q 0.18 deleterious(0) probably_damaging(0.91) TCGA-EI-6917-01 3 113664413 113664413 G T GRAMD1C 3'UTR 0.37 TCGA-EI-6917-01 3 11643494 11643494 C T VGLL4 Missense_Mutation p.E29K 0.17 deleterious(0.01) benign(0.178) TCGA-EI-6917-01 3 118647492 118647492 G A IGSF11 Silent p.G96G 0.39 TCGA-EI-6917-01 3 118865646 118865646 C T C3orf30 Nonsense_Mutation p.R204* 0.14 TCGA-EI-6917-01 3 118865823 118865823 T C C3orf30 Missense_Mutation p.S263P 0.31 deleterious(0.05) probably_damaging(0.959) TCGA-EI-6917-01 3 119120970 119120970 G A ARHGAP31 Silent p.S457S 0.22 TCGA-EI-6917-01 3 119135115 119135115 C T ARHGAP31 3'UTR 0.18 TCGA-EI-6917-01 3 119211307 119211307 C T POGLUT1 3'UTR 0.26 TCGA-EI-6917-01 3 119219544 119219544 A C TIMMDC1 Missense_Mutation p.E66A 0.14 deleterious(0.02) possibly_damaging(0.521) TCGA-EI-6917-01 3 119263685 119263685 C A CD80 Nonsense_Mutation p.E44* 0.25 TCGA-EI-6917-01 3 119379029 119379029 C T POPDC2 Missense_Mutation p.S81N 0.24 tolerated(1) benign(0.001) TCGA-EI-6917-01 3 119427502 119427502 C T MAATS1 Missense_Mutation p.R142C 0.21 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 119458111 119458111 G T MAATS1 Nonsense_Mutation p.E491* 0.17 TCGA-EI-6917-01 3 119466052 119466052 G A MAATS1 Missense_Mutation p.A665T 0.27 tolerated(0.11) benign(0.019) TCGA-EI-6917-01 3 119582439 119582439 C T GSK3B Missense_Mutation p.R321Q 0.27 deleterious(0.01) possibly_damaging(0.477) TCGA-EI-6917-01 3 119892302 119892302 C T GPR156 Missense_Mutation p.A317T 0.24 tolerated(0.06) benign(0.266) TCGA-EI-6917-01 3 120053798 120053798 C T LRRC58 Missense_Mutation p.R273Q 0.22 tolerated(0.23) benign(0.003) TCGA-EI-6917-01 3 120424951 120424951 G A RABL3 Silent p.F93F 0.30 TCGA-EI-6917-01 3 120628533 120628533 C A STXBP5L Silent p.S36S 0.17 TCGA-EI-6917-01 3 121097679 121097679 C T STXBP5L Nonsense_Mutation p.R789* 0.25 TCGA-EI-6917-01 3 121100202 121100202 T G STXBP5L Missense_Mutation p.S828A 0.34 tolerated(0.26) benign(0.006) TCGA-EI-6917-01 3 121206902 121206902 T G POLQ Missense_Mutation p.N1626H 0.22 tolerated(0.07) possibly_damaging(0.625) TCGA-EI-6917-01 3 121208587 121208587 C T POLQ Missense_Mutation p.R1064K 0.25 tolerated_low_confidence(0.26) benign(0.004) TCGA-EI-6917-01 3 121341231 121341231 A T FBXO40 Missense_Mutation p.I319L 0.10 tolerated(0.09) benign(0.174) TCGA-EI-6917-01 3 121351318 121351318 C T HCLS1 Silent p.E367E 0.39 TCGA-EI-6917-01 3 121353237 121353237 C T HCLS1 Silent p.A240A 0.24 TCGA-EI-6917-01 3 121410584 121410584 C A GOLGB1 Nonsense_Mutation p.E2543* 0.18 TCGA-EI-6917-01 3 121411334 121411334 C A GOLGB1 Nonsense_Mutation p.E2293* 0.18 TCGA-EI-6917-01 3 121414006 121414006 C T GOLGB1 Silent p.T1788T 0.22 TCGA-EI-6917-01 3 121547365 121547365 C T IQCB1 Missense_Mutation p.R72Q 0.27 tolerated(0.13) possibly_damaging(0.466) TCGA-EI-6917-01 3 121641955 121641955 C A SLC15A2 Missense_Mutation p.F312L 0.12 deleterious(0) probably_damaging(0.98) TCGA-EI-6917-01 3 12198908 12198908 G T TIMP4 Silent p.R72R 0.25 TCGA-EI-6917-01 3 122002976 122002976 C T CASR Silent p.F735F 0.27 TCGA-EI-6917-01 3 122134022 122134022 C A WDR5B Missense_Mutation p.L118F 0.27 tolerated(0.08) benign(0.364) TCGA-EI-6917-01 3 122487686 122487686 G A HSPBAP1 Silent p.L98L 0.23 TCGA-EI-6917-01 3 122632791 122632791 G A SEMA5B Silent p.I736I 0.24 TCGA-EI-6917-01 3 123383022 123383022 G A MYLK Silent p.C1305C 0.30 TCGA-EI-6917-01 3 123675337 123675337 C T CCDC14 Intron 0.24 TCGA-EI-6917-01 3 124175500 124175500 C T KALRN Missense_Mutation p.S1258L 0.20 tolerated(0.44) benign(0.065) TCGA-EI-6917-01 3 124398310 124398310 G A KALRN Silent p.T744T 0.32 TCGA-EI-6917-01 3 124746246 124746246 G A HEG1 Missense_Mutation p.A239V 0.26 tolerated_low_confidence(0.37) benign(0) TCGA-EI-6917-01 3 125032337 125032337 G A ZNF148 Nonsense_Mutation p.R50* 0.22 TCGA-EI-6917-01 3 125266248 125266248 A G OSBPL11 Splice_Site p.X614_splice 0.15 TCGA-EI-6917-01 3 125286396 125286396 C T OSBPL11 Missense_Mutation p.R237Q 0.30 tolerated(0.42) benign(0.023) TCGA-EI-6917-01 3 125855661 125855661 G A ALDH1L1 Silent p.F440F 0.32 TCGA-EI-6917-01 3 125879705 125879705 C T ALDH1L1 Missense_Mutation p.D50N 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EI-6917-01 3 126219713 126219713 G A UROC1 Missense_Mutation p.R384C 0.20 deleterious(0.02) possibly_damaging(0.697) TCGA-EI-6917-01 3 1269512 1269512 A C CNTN6 Missense_Mutation p.N65H 0.25 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 127325561 127325561 C T MCM2 Silent p.F334F 0.27 TCGA-EI-6917-01 3 127784075 127784075 G A SEC61A1 Intron 0.38 TCGA-EI-6917-01 3 128181322 128181322 C T DNAJB8 3'UTR 0.19 TCGA-EI-6917-01 3 128532194 128532194 G A RAB7A Missense_Mutation p.E185K 0.20 tolerated(0.26) benign(0.002) TCGA-EI-6917-01 3 12858048 12858048 C T CAND2 Silent p.A539A 0.27 TCGA-EI-6917-01 3 128580634 128580634 G A RP11-723O4.9 5'Flank 0.26 TCGA-EI-6917-01 3 129020936 129020936 G A HMCES Missense_Mutation p.R260Q 0.27 deleterious(0.01) possibly_damaging(0.746) TCGA-EI-6917-01 3 129195582 129195582 G A IFT122 Missense_Mutation p.R413H 0.32 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 3 129547211 129547211 G A TMCC1 Missense_Mutation p.S4L 0.28 tolerated_low_confidence(0.07) benign(0.06) TCGA-EI-6917-01 3 130098410 130098410 C T COL6A5 Nonsense_Mutation p.R273* 0.22 TCGA-EI-6917-01 3 130107815 130107815 C T COL6A5 Missense_Mutation p.R752W 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 130174354 130174354 G T COL6A5 Nonsense_Mutation p.E2212* 0.23 TCGA-EI-6917-01 3 130285586 130285586 C T COL6A6 Silent p.I441I 0.27 TCGA-EI-6917-01 3 130424530 130424530 C T PIK3R4 Missense_Mutation p.R936Q 0.17 deleterious(0.04) benign(0.187) TCGA-EI-6917-01 3 130463956 130463956 C T PIK3R4 Missense_Mutation p.R36Q 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 130694212 130694212 G A ATP2C1 Missense_Mutation p.E518K 0.24 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 3 131283179 131283179 G T CPNE4 Missense_Mutation p.F314L 0.30 deleterious(0.02) probably_damaging(0.952) TCGA-EI-6917-01 3 131418817 131418817 G A CPNE4 Missense_Mutation p.S123F 0.31 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 3 132063831 132063831 G T ACPP Nonsense_Mutation p.E237* 0.12 TCGA-EI-6917-01 3 132222127 132222127 G T DNAJC13 Nonsense_Mutation p.E1596* 0.30 TCGA-EI-6917-01 3 132378616 132378616 G A UBA5 5'UTR 0.19 TCGA-EI-6917-01 3 132389070 132389070 G A UBA5 Missense_Mutation p.V146I 0.21 tolerated(0.23) benign(0.001) TCGA-EI-6917-01 3 132400736 132400736 G T NPHP3 3'UTR 0.28 TCGA-EI-6917-01 3 132407702 132407702 G A NPHP3 Nonsense_Mutation p.R973* 0.27 TCGA-EI-6917-01 3 132434044 132434044 A G NPHP3 Missense_Mutation p.V281A 0.23 tolerated(0.18) benign(0.005) TCGA-EI-6917-01 3 133114827 133114827 C T TMEM108 Silent p.I575I 0.24 TCGA-EI-6917-01 3 133118994 133118994 C T BFSP2 Missense_Mutation p.R23C 0.31 deleterious(0.04) benign(0.002) TCGA-EI-6917-01 3 133347477 133347477 G A TOPBP1 Missense_Mutation p.A874V 0.25 deleterious(0.04) benign(0.162) TCGA-EI-6917-01 3 133371309 133371309 G A TOPBP1 Missense_Mutation p.R363W 0.24 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 3 133553479 133553479 G A RAB6B Nonsense_Mutation p.R168* 0.31 TCGA-EI-6917-01 3 133647277 133647277 C T C3orf36 Missense_Mutation p.R124H 0.29 tolerated_low_confidence(0.64) benign(0) TCGA-EI-6917-01 3 133648537 133648537 A G C3orf36 5'UTR 0.26 TCGA-EI-6917-01 3 133657281 133657281 C T SLCO2A1 Missense_Mutation p.R561H 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 133666199 133666199 C T SLCO2A1 Missense_Mutation p.R399H 0.27 tolerated(0.25) probably_damaging(1) TCGA-EI-6917-01 3 133878145 133878145 C T RYK Missense_Mutation p.E551K 0.31 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 3 133878154 133878154 C T RYK Missense_Mutation p.D548N 0.26 deleterious(0.01) probably_damaging(0.992) TCGA-EI-6917-01 3 133910804 133910804 G A RYK Missense_Mutation p.R303W 0.33 deleterious(0.01) benign(0.011) TCGA-EI-6917-01 3 134085260 134085260 C T AMOTL2 Missense_Mutation p.E351K 0.18 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 3 13415338 13415338 C T NUP210 Silent p.S489S 0.42 TCGA-EI-6917-01 3 134256034 134256034 G A CEP63 Missense_Mutation p.R160H 0.15 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 3 134267928 134267928 T C CEP63 Silent p.C364C 0.31 TCGA-EI-6917-01 3 13438914 13438914 C T NUP210 Missense_Mutation p.E127K 0.20 deleterious(0.04) possibly_damaging(0.903) TCGA-EI-6917-01 3 135721560 135721560 C A PPP2R3A Missense_Mutation p.S407Y 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-EI-6917-01 3 135721723 135721723 C T PPP2R3A Silent p.C461C 0.23 TCGA-EI-6917-01 3 136057009 136057009 A C STAG1 3'UTR 0.41 TCGA-EI-6917-01 3 13663283 13663283 G A FBLN2 Missense_Mutation p.E722K 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-EI-6917-01 3 137717734 137717734 C T CLDN18 Silent p.G8G 0.24 TCGA-EI-6917-01 3 137849931 137849931 C A A4GNT Missense_Mutation p.E56D 0.23 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 3 137960826 137960826 G A ARMC8 Splice_Site p.X332_splice 0.23 TCGA-EI-6917-01 3 137983011 137983011 G A ARMC8 Missense_Mutation p.R405Q 0.31 deleterious(0.03) possibly_damaging(0.768) TCGA-EI-6917-01 3 138037034 138037034 C T NME9 Missense_Mutation p.E53K 0.26 tolerated(0.05) benign(0.031) TCGA-EI-6917-01 3 138121189 138121189 C A MRAS 3'UTR 0.25 TCGA-EI-6917-01 3 138213677 138213677 C T CEP70 3'UTR 0.44 TCGA-EI-6917-01 3 138256075 138256075 T G CEP70 Missense_Mutation p.N194H 0.19 deleterious(0.01) probably_damaging(0.929) TCGA-EI-6917-01 3 138256103 138256104 - T CEP70 Frame_Shift_Ins p.E185Gfs*27 0.15 TCGA-EI-6917-01 3 138453486 138453486 C T PIK3CB Missense_Mutation p.R321Q 0.23 tolerated(0.6) benign(0.003) TCGA-EI-6917-01 3 139092543 139092543 C T COPB2 Missense_Mutation p.A287T 0.27 deleterious(0.01) possibly_damaging(0.848) TCGA-EI-6917-01 3 1394112 1394112 A G CNTN6 Missense_Mutation p.N490S 0.24 tolerated(1) benign(0.004) TCGA-EI-6917-01 3 140185541 140185541 C T CLSTN2 Missense_Mutation p.R438C 0.26 deleterious(0) probably_damaging(0.969) TCGA-EI-6917-01 3 140397108 140397108 A G TRIM42 Missense_Mutation p.T13A 0.25 tolerated_low_confidence(0.2) unknown(0) TCGA-EI-6917-01 3 141277764 141277764 T C RASA2 Missense_Mutation p.F241L 0.22 tolerated(0.11) possibly_damaging(0.645) TCGA-EI-6917-01 3 14163466 14163466 C T CHCHD4 Silent p.S4S 0.28 TCGA-EI-6917-01 3 142141481 142141481 G T XRN1 Missense_Mutation p.H304N 0.33 tolerated(0.22) benign(0.014) TCGA-EI-6917-01 3 142268448 142268448 C T ATR Missense_Mutation p.R1015Q 0.22 deleterious(0.05) possibly_damaging(0.716) TCGA-EI-6917-01 3 142416866 142416866 T C PLS1 Missense_Mutation p.V443A 0.27 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 3 142523293 142523293 G T TRPC1 Nonsense_Mutation p.E659* 0.29 TCGA-EI-6917-01 3 142681209 142681209 C T PAQR9 Missense_Mutation p.D324N 0.14 tolerated(0.08) possibly_damaging(0.699) TCGA-EI-6917-01 3 1427322 1427322 G A CNTN6 Missense_Mutation p.E849K 0.19 deleterious(0.01) possibly_damaging(0.648) TCGA-EI-6917-01 3 142775322 142775322 G A U2SURP 3'UTR 0.36 TCGA-EI-6917-01 3 143082376 143082376 C T SLC9A9 Silent p.T518T 0.25 TCGA-EI-6917-01 3 145796919 145796919 C T PLOD2 Missense_Mutation p.R495Q 0.20 tolerated(0.34) benign(0.258) TCGA-EI-6917-01 3 146309630 146309630 G A PLSCR5 Silent p.Y164Y 0.25 TCGA-EI-6917-01 3 14706612 14706612 A C CCDC174 Missense_Mutation p.K188T 0.30 deleterious(0.01) benign(0.246) TCGA-EI-6917-01 3 147113761 147113761 T C ZIC4 Missense_Mutation p.Y239C 0.19 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 3 148614535 148614535 T G CPA3 3'UTR 0.28 TCGA-EI-6917-01 3 148778616 148778616 C T HLTF Missense_Mutation p.S397N 0.20 tolerated(0.07) possibly_damaging(0.474) TCGA-EI-6917-01 3 149485833 149485833 C A ANKUB1 Nonsense_Mutation p.E206* 0.26 TCGA-EI-6917-01 3 149678959 149678959 C T RNF13 3'UTR 0.36 TCGA-EI-6917-01 3 150301002 150301002 G A EIF2A Missense_Mutation p.E548K 0.15 tolerated(0.05) possibly_damaging(0.83) TCGA-EI-6917-01 3 150460067 150460067 G A SIAH2 Missense_Mutation p.T279M 0.29 deleterious(0.04) possibly_damaging(0.536) TCGA-EI-6917-01 3 150645709 150645709 G T CLRN1 3'Flank 0.27 TCGA-EI-6917-01 3 150690281 150690281 C T CLRN1 Missense_Mutation p.R72K 0.35 tolerated(0.29) benign(0.175) TCGA-EI-6917-01 3 150874112 150874112 T C MED12L Missense_Mutation p.F241L 0.26 deleterious(0.04) probably_damaging(0.968) TCGA-EI-6917-01 3 150931159 150931159 C T P2RY14 Missense_Mutation p.A316T 0.26 tolerated(0.66) benign(0) TCGA-EI-6917-01 3 151011986 151011986 G A GPR87 Missense_Mutation p.R350C 0.27 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 3 151012145 151012145 C A GPR87 Nonsense_Mutation p.E297* 0.24 TCGA-EI-6917-01 3 151163622 151163622 C T IGSF10 Missense_Mutation p.E1383K 0.24 tolerated(0.7) benign(0.003) TCGA-EI-6917-01 3 151163827 151163827 C T IGSF10 Silent p.T1314T 0.28 TCGA-EI-6917-01 3 152884707 152884707 G A RAP2B 3'UTR 0.25 TCGA-EI-6917-01 3 15297832 15297832 C T SH3BP5 Intron 0.28 TCGA-EI-6917-01 3 153202324 153202324 G T C3orf79 5'UTR 0.31 TCGA-EI-6917-01 3 153202455 153202455 G A C3orf79 Missense_Mutation p.R37K 0.20 deleterious_low_confidence(0) benign(0.14) TCGA-EI-6917-01 3 153909130 153909130 G T ARHGEF26 Missense_Mutation p.D565Y 0.25 deleterious(0) possibly_damaging(0.796) TCGA-EI-6917-01 3 154862150 154862150 C T MME Silent p.V440V 0.27 TCGA-EI-6917-01 3 155212268 155212268 C T PLCH1 Missense_Mutation p.A633T 0.20 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 3 15621484 15621484 G A HACL1 Missense_Mutation p.P246S 0.24 deleterious(0) benign(0.053) TCGA-EI-6917-01 3 15686027 15686027 G A BTD Missense_Mutation p.D222N 0.27 tolerated(0.49) possibly_damaging(0.451) TCGA-EI-6917-01 3 15836768 15836768 G A ANKRD28 Nonsense_Mutation p.R25* 0.28 TCGA-EI-6917-01 3 160141306 160141306 C T SMC4 Missense_Mutation p.R705C 0.23 deleterious(0.01) benign(0.177) TCGA-EI-6917-01 3 160249325 160249325 C T KPNA4 Missense_Mutation p.R103Q 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-EI-6917-01 3 160679599 160679599 G T PPM1L Nonsense_Mutation p.E159* 0.27 TCGA-EI-6917-01 3 161217042 161217042 G T OTOL1 Nonsense_Mutation p.E150* 0.22 TCGA-EI-6917-01 3 16216836 16216836 G A GALNT15 Missense_Mutation p.D60N 0.33 tolerated_low_confidence(0.16) benign(0.004) TCGA-EI-6917-01 3 16254193 16254193 C T GALNT15 Missense_Mutation p.R439C 0.27 deleterious(0.01) benign(0.035) TCGA-EI-6917-01 3 164705012 164705012 C T SI Missense_Mutation p.R1704Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 3 164737505 164737505 G A SI Missense_Mutation p.S1103L 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 3 164758813 164758813 G A SI Missense_Mutation p.R692C 0.23 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 3 165548676 165548676 A C BCHE Missense_Mutation p.F49C 0.28 tolerated(0.06) possibly_damaging(0.522) TCGA-EI-6917-01 3 166958454 166958454 C T ZBBX 3'UTR 0.21 TCGA-EI-6917-01 3 167000193 167000193 C T ZBBX Missense_Mutation p.R696Q 0.30 tolerated(0.27) benign(0.024) TCGA-EI-6917-01 3 167164233 167164233 C T SERPINI2 Missense_Mutation p.S363N 0.24 tolerated(1) benign(0.001) TCGA-EI-6917-01 3 167245638 167245638 G T WDR49 Silent p.V506V 0.27 TCGA-EI-6917-01 3 167413466 167413466 C T PDCD10 Missense_Mutation p.E105K 0.23 tolerated(1) benign(0.006) TCGA-EI-6917-01 3 167747752 167747752 C T GOLIM4 Missense_Mutation p.A417T 0.40 deleterious(0.01) probably_damaging(0.933) TCGA-EI-6917-01 3 168834455 168834455 C A MECOM Missense_Mutation p.R279I 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 169492094 169492094 C T MYNN Missense_Mutation p.S4L 0.31 tolerated(0.13) benign(0.322) TCGA-EI-6917-01 3 169496746 169496746 C T MYNN Nonsense_Mutation p.R153* 0.24 TCGA-EI-6917-01 3 169539863 169539863 G T LRRIQ4 Nonsense_Mutation p.E52* 0.20 TCGA-EI-6917-01 3 169540109 169540109 C T LRRIQ4 Missense_Mutation p.P134S 0.32 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 169637260 169637260 C T SAMD7 5'UTR 0.24 TCGA-EI-6917-01 3 169846591 169846591 C A PHC3 Nonsense_Mutation p.E557* 0.30 TCGA-EI-6917-01 3 170078603 170078603 G A SKIL Missense_Mutation p.E162K 0.27 deleterious(0) benign(0.287) TCGA-EI-6917-01 3 170198899 170198899 G A SLC7A14 Missense_Mutation p.S391L 0.35 tolerated(0.06) possibly_damaging(0.692) TCGA-EI-6917-01 3 170802022 170802022 G A TNIK Missense_Mutation p.R1031W 0.16 deleterious(0) benign(0.014) TCGA-EI-6917-01 3 170802100 170802100 C T TNIK Missense_Mutation p.E1005K 0.29 deleterious(0.02) possibly_damaging(0.565) TCGA-EI-6917-01 3 173322629 173322629 C T NLGN1 Missense_Mutation p.L81F 0.21 deleterious(0) benign(0.009) TCGA-EI-6917-01 3 17469999 17469999 T G TBC1D5 Missense_Mutation p.K37T 0.38 tolerated_low_confidence(0.27) benign(0.038) TCGA-EI-6917-01 3 174814663 174814663 G A NAALADL2 Missense_Mutation p.A43T 0.30 tolerated(0.1) benign(0.011) TCGA-EI-6917-01 3 178560725 178560725 A C KCNMB2 Nonstop_Mutation p.*236Yext*7 0.32 TCGA-EI-6917-01 3 178748762 178748762 C T ZMAT3 Missense_Mutation p.R99Q 0.29 deleterious(0.01) benign(0.342) TCGA-EI-6917-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.53 tolerated(0.06) probably_damaging(0.998) TCGA-EI-6917-01 3 178916959 178916959 G A PIK3CA Missense_Mutation p.E116K 0.18 tolerated(0.27) benign(0.178) TCGA-EI-6917-01 3 179537731 179537731 C A PEX5L Nonsense_Mutation p.E286* 0.28 TCGA-EI-6917-01 3 180703743 180703743 C T DNAJC19 Missense_Mutation p.R84Q 0.18 tolerated(0.1) benign(0.005) TCGA-EI-6917-01 3 182740313 182740313 A G MCCC1 Silent p.G587G 0.25 TCGA-EI-6917-01 3 182937672 182937672 T C MCF2L2 Missense_Mutation p.D781G 0.21 deleterious(0.01) possibly_damaging(0.761) TCGA-EI-6917-01 3 183390102 183390102 G A KLHL24 Missense_Mutation p.E478K 0.19 tolerated(0.85) benign(0.038) TCGA-EI-6917-01 3 183774001 183774001 G T HTR3C Nonsense_Mutation p.E106* 0.16 TCGA-EI-6917-01 3 184018068 184018068 G A PSMD2 Missense_Mutation p.E65K 0.38 deleterious(0.02) possibly_damaging(0.881) TCGA-EI-6917-01 3 184041658 184041658 G A EIF4G1 Missense_Mutation p.D796N 0.25 deleterious(0.05) benign(0.34) TCGA-EI-6917-01 3 184062293 184062293 G A FAM131A Silent p.G212G 0.22 TCGA-EI-6917-01 3 184090609 184090609 C T THPO Missense_Mutation p.E252K 0.23 tolerated_low_confidence(0.21) benign(0.002) TCGA-EI-6917-01 3 184104448 184104448 G T CHRD Missense_Mutation p.D701Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 184910806 184910806 C A EHHADH Missense_Mutation p.M460I 0.20 deleterious(0.01) possibly_damaging(0.753) TCGA-EI-6917-01 3 185643322 185643322 C T TRA2B Missense_Mutation p.R88Q 0.27 tolerated(0.22) unknown(0) TCGA-EI-6917-01 3 185798959 185798959 G T ETV5 Missense_Mutation p.L80I 0.18 deleterious(0.01) benign(0.13) TCGA-EI-6917-01 3 186456902 186456902 G T KNG1 Missense_Mutation p.K315N 0.23 tolerated(0.29) possibly_damaging(0.532) TCGA-EI-6917-01 3 186460012 186460012 G A KNG1 Silent p.T609T 0.24 TCGA-EI-6917-01 3 186917726 186917726 G A RTP1 Silent p.A220A 0.22 TCGA-EI-6917-01 3 187003752 187003752 G A MASP1 Missense_Mutation p.S33L 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 187442757 187442757 C T BCL6 Missense_Mutation p.R650Q 0.26 deleterious(0.02) probably_damaging(0.981) TCGA-EI-6917-01 3 187446966 187446966 C T BCL6 Silent p.T409T 0.24 TCGA-EI-6917-01 3 189712007 189712007 G A LEPREL1 Silent p.F233F 0.21 TCGA-EI-6917-01 3 191093190 191093190 G A CCDC50 Missense_Mutation p.R263Q 0.29 tolerated(0.22) benign(0.005) TCGA-EI-6917-01 3 191097967 191097967 G A CCDC50 Missense_Mutation p.M332I 0.34 tolerated(0.26) benign(0.002) TCGA-EI-6917-01 3 19295239 19295239 G A KCNH8 Missense_Mutation p.R57Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 3 193051547 193051547 A G ATP13A5 Missense_Mutation p.Y422H 0.14 tolerated(0.11) benign(0.033) TCGA-EI-6917-01 3 193080376 193080376 C A ATP13A5 Missense_Mutation p.E145D 0.27 tolerated(0.5) benign(0.149) TCGA-EI-6917-01 3 194079968 194079968 G T LRRC15 3'UTR 0.15 TCGA-EI-6917-01 3 194080881 194080881 G A LRRC15 Missense_Mutation p.L304F 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 194118380 194118380 G A GP5 Missense_Mutation p.S211L 0.32 deleterious(0.03) possibly_damaging(0.686) TCGA-EI-6917-01 3 194379757 194379757 C T LSG1 Missense_Mutation p.E230K 0.25 tolerated(0.16) benign(0.005) TCGA-EI-6917-01 3 19498417 19498417 C T KCNH8 Silent p.F661F 0.19 TCGA-EI-6917-01 3 195510125 195510125 A C MUC4 Missense_Mutation p.S2776A 0.24 possibly_damaging(0.858) TCGA-EI-6917-01 3 195798938 195798938 G A TFRC Missense_Mutation p.R174C 0.27 deleterious(0.02) possibly_damaging(0.448) TCGA-EI-6917-01 3 196051480 196051480 G T TM4SF19 Intron 0.38 TCGA-EI-6917-01 3 197430431 197430431 G A KIAA0226 Silent p.I186I 0.39 TCGA-EI-6917-01 3 197682655 197682655 A C RPL35A 3'UTR 0.21 TCGA-EI-6917-01 3 20187847 20187847 C T KAT2B Nonsense_Mutation p.R682* 0.32 TCGA-EI-6917-01 3 20187890 20187890 G A KAT2B Missense_Mutation p.R696Q 0.29 deleterious(0.01) possibly_damaging(0.895) TCGA-EI-6917-01 3 20212535 20212535 G A SGOL1 Missense_Mutation p.S491L 0.27 deleterious(0.01) probably_damaging(0.979) TCGA-EI-6917-01 3 25661392 25661392 T G TOP2B Missense_Mutation p.K1003N 0.22 deleterious(0) possibly_damaging(0.666) TCGA-EI-6917-01 3 25685194 25685194 C A TOP2B Nonsense_Mutation p.E103* 0.32 TCGA-EI-6917-01 3 25775392 25775392 G A NGLY1 Nonsense_Mutation p.R411* 0.28 TCGA-EI-6917-01 3 3078897 3078897 G A CNTN4 Silent p.A659A 0.12 TCGA-EI-6917-01 3 3095571 3095571 C T CNTN4 Silent p.F964F 0.28 TCGA-EI-6917-01 3 31677515 31677515 G T STT3B Missense_Mutation p.V814F 0.24 deleterious_low_confidence(0.02) benign(0.071) TCGA-EI-6917-01 3 32758656 32758656 G A CNOT10 Missense_Mutation p.R284Q 0.21 deleterious(0.01) possibly_damaging(0.851) TCGA-EI-6917-01 3 32932913 32932913 C T TRIM71 Silent p.F739F 0.31 TCGA-EI-6917-01 3 32995633 32995633 C T CCR4 Missense_Mutation p.A240V 0.28 tolerated(0.05) probably_damaging(1) TCGA-EI-6917-01 3 33099639 33099639 T G GLB1 Missense_Mutation p.K225N 0.21 tolerated(0.4) benign(0.019) TCGA-EI-6917-01 3 33438562 33438562 G A UBP1 Missense_Mutation p.R416W 0.24 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 3 33539994 33539994 G A CLASP2 3'UTR 0.26 TCGA-EI-6917-01 3 36873853 36873853 G T TRANK1 Silent p.I2363I 0.33 TCGA-EI-6917-01 3 36880101 36880101 T C TRANK1 Intron 0.36 TCGA-EI-6917-01 3 37058999 37058999 C T MLH1 Missense_Mutation p.R265C 0.27 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 37107798 37107798 C A LRRFIP2 Nonsense_Mutation p.E495* 0.32 TCGA-EI-6917-01 3 37367658 37367658 G T GOLGA4 Missense_Mutation p.E1449D 0.29 probably_damaging(0.999) TCGA-EI-6917-01 3 37458809 37458809 G T C3orf35 Nonsense_Mutation p.E18* 0.33 TCGA-EI-6917-01 3 37512510 37512510 C T ITGA9 Silent p.G66G 0.25 TCGA-EI-6917-01 3 38049851 38049851 G A PLCD1 Missense_Mutation p.S658L 0.30 deleterious(0) probably_damaging(0.965) TCGA-EI-6917-01 3 38271862 38271862 G T OXSR1 Nonsense_Mutation p.E298* 0.28 TCGA-EI-6917-01 3 38291486 38291486 G A OXSR1 Missense_Mutation p.R451Q 0.24 deleterious(0.02) probably_damaging(0.934) TCGA-EI-6917-01 3 38408338 38408338 A C XYLB Missense_Mutation p.N183H 0.18 tolerated(0.16) benign(0.005) TCGA-EI-6917-01 3 38565705 38565705 G A EXOG Missense_Mutation p.R320Q 0.26 deleterious(0.03) benign(0.075) TCGA-EI-6917-01 3 38647482 38647482 C T SCN5A Missense_Mutation p.R433H 0.14 deleterious(0.01) probably_damaging(0.988) TCGA-EI-6917-01 3 38655513 38655513 C T SCN5A Missense_Mutation p.R219Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 3 38739367 38739367 G A SCN10A Nonsense_Mutation p.R1782* 0.23 TCGA-EI-6917-01 3 38927620 38927620 C T SCN11A Missense_Mutation p.R982Q 0.29 tolerated(0.58) benign(0.011) TCGA-EI-6917-01 3 38991597 38991597 C T SCN11A Missense_Mutation p.R86Q 0.19 tolerated(0.49) benign(0.246) TCGA-EI-6917-01 3 39188052 39188052 C T CSRNP1 Missense_Mutation p.R41H 0.14 tolerated(0.12) benign(0.243) TCGA-EI-6917-01 3 39225260 39225260 G A XIRP1 3'UTR 0.38 TCGA-EI-6917-01 3 39226048 39226048 T C XIRP1 Missense_Mutation p.H1630R 0.28 tolerated(0.32) benign(0.004) TCGA-EI-6917-01 3 39554955 39554955 G A MOBP 3'UTR 0.46 TCGA-EI-6917-01 3 40352523 40352523 G T EIF1B Missense_Mutation p.K57N 0.24 tolerated(0.1) probably_damaging(0.986) TCGA-EI-6917-01 3 40529092 40529092 G T ZNF619 Missense_Mutation p.R404I 0.18 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 3 41275240 41275240 G A CTNNB1 Missense_Mutation p.R469H 0.26 deleterious(0) probably_damaging(0.977) TCGA-EI-6917-01 3 41759331 41759331 C A ULK4 Missense_Mutation p.D782Y 0.09 deleterious(0) probably_damaging(0.989) TCGA-EI-6917-01 3 42681218 42681218 C T NKTR Missense_Mutation p.S1341L 0.29 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 3 42685435 42685435 G A NKTR Missense_Mutation p.R1414Q 0.26 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 3 42739084 42739084 C T HHATL Missense_Mutation p.V261I 0.30 tolerated(0.28) possibly_damaging(0.887) TCGA-EI-6917-01 3 42908344 42908344 G T ACKR2 3'UTR 0.19 TCGA-EI-6917-01 3 43074443 43074443 C T FAM198A Missense_Mutation p.P230S 0.17 tolerated(0.05) benign(0.377) TCGA-EI-6917-01 3 432443 432443 G A CHL1 Missense_Mutation p.V844I 0.18 deleterious(0.03) possibly_damaging(0.88) TCGA-EI-6917-01 3 43384870 43384870 G A SNRK Missense_Mutation p.A327T 0.24 deleterious(0) probably_damaging(0.947) TCGA-EI-6917-01 3 43389405 43389405 C T SNRK Missense_Mutation p.R552W 0.17 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-EI-6917-01 3 43602729 43602729 C A ANO10 Nonsense_Mutation p.E487* 0.24 TCGA-EI-6917-01 3 43756497 43756497 C T ABHD5 Silent p.F240F 0.25 TCGA-EI-6917-01 3 44285221 44285221 C T TOPAZ1 Missense_Mutation p.S408F 0.22 tolerated(0.42) benign(0.096) TCGA-EI-6917-01 3 44285720 44285720 A C TOPAZ1 Silent p.S574S 0.30 TCGA-EI-6917-01 3 44488167 44488167 A G ZNF445 Missense_Mutation p.F999S 0.31 deleterious(0.01) possibly_damaging(0.637) TCGA-EI-6917-01 3 44541538 44541538 T G ZNF852 Missense_Mutation p.K244T 0.24 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 3 44542084 44542084 T G ZNF852 Missense_Mutation p.E62A 0.30 tolerated(0.27) benign(0.009) TCGA-EI-6917-01 3 44637226 44637226 G A ZNF660 3'UTR 0.38 TCGA-EI-6917-01 3 44688197 44688197 C T ZNF197 3'Flank 0.31 TCGA-EI-6917-01 3 44777349 44777349 C A ZNF501 3'UTR 0.26 TCGA-EI-6917-01 3 44893345 44893345 C T KIF15 Silent p.V1291V 0.26 TCGA-EI-6917-01 3 44905757 44905757 C A TMEM42 Missense_Mutation p.F87L 0.24 tolerated(0.27) possibly_damaging(0.64) TCGA-EI-6917-01 3 45038681 45038681 C T EXOSC7 Silent p.V119V 0.22 TCGA-EI-6917-01 3 46062905 46062905 C T XCR1 Missense_Mutation p.E179K 0.28 tolerated(0.12) benign(0.06) TCGA-EI-6917-01 3 46399716 46399716 G A CCR2 Missense_Mutation p.R233Q 0.21 tolerated(0.07) possibly_damaging(0.746) TCGA-EI-6917-01 3 46415182 46415182 C A CCR5 Missense_Mutation p.F263L 0.12 tolerated(1) benign(0.002) TCGA-EI-6917-01 3 46619331 46619331 G A TDGF1 5'UTR 0.46 TCGA-EI-6917-01 3 46622743 46622743 G A TDGF1 3'UTR 0.18 TCGA-EI-6917-01 3 46758929 46758929 C T PRSS50 Missense_Mutation p.R102H 0.26 tolerated(0.57) benign(0) TCGA-EI-6917-01 3 47162904 47162904 C A SETD2 Missense_Mutation p.K1074N 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.501) TCGA-EI-6917-01 3 47165471 47165471 T G SETD2 Missense_Mutation p.I219L 0.20 deleterious_low_confidence(0.02) benign(0.001) TCGA-EI-6917-01 3 4730293 4730293 C A ITPR1 Missense_Mutation p.L1258I 0.22 deleterious(0.05) probably_damaging(0.997) TCGA-EI-6917-01 3 47308711 47308711 T G KIF9 Missense_Mutation p.N212H 0.27 tolerated(0.07) benign(0.114) TCGA-EI-6917-01 3 47378053 47378053 C T KLHL18 Silent p.F309F 0.24 TCGA-EI-6917-01 3 47449251 47449251 C A PTPN23 Silent p.I356I 0.22 TCGA-EI-6917-01 3 47453636 47453636 G A PTPN23 Missense_Mutation p.A1376T 0.24 benign(0.134) TCGA-EI-6917-01 3 47604225 47604225 G A CSPG5 Silent p.I522I 0.19 TCGA-EI-6917-01 3 47618877 47618877 G A CSPG5 Silent p.F213F 0.20 TCGA-EI-6917-01 3 47719764 47719764 G A SMARCC1 Missense_Mutation p.R499C 0.25 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 3 47888078 47888078 G A DHX30 Missense_Mutation p.E506K 0.36 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 47888153 47888153 G A DHX30 Missense_Mutation p.A531T 0.27 deleterious(0) benign(0.374) TCGA-EI-6917-01 3 48423200 48423200 C T FBXW12 Silent p.I332I 0.31 TCGA-EI-6917-01 3 48436111 48436111 C A FBXW12 Missense_Mutation p.S461Y 0.20 deleterious(0) probably_damaging(0.948) TCGA-EI-6917-01 3 48452419 48452419 C T PLXNB1 Silent p.G1758G 0.16 TCGA-EI-6917-01 3 48491531 48491531 C T ATRIP Silent p.F112F 0.25 TCGA-EI-6917-01 3 48637980 48637980 G A UQCRC1 Missense_Mutation p.A383V 0.15 tolerated(1) benign(0.004) TCGA-EI-6917-01 3 48668121 48668121 G A SLC26A6 Silent p.I389I 0.25 TCGA-EI-6917-01 3 49051179 49051179 G A WDR6 Missense_Mutation p.D768N 0.15 tolerated(0.45) benign(0.002) TCGA-EI-6917-01 3 49282143 49282143 C A CCDC36 Missense_Mutation p.S170Y 0.38 tolerated(0.1) benign(0.2) TCGA-EI-6917-01 3 49690163 49690163 G T BSN Missense_Mutation p.K1058N 0.31 unknown(0) TCGA-EI-6917-01 3 49699578 49699578 G A BSN Missense_Mutation p.D3434N 0.34 unknown(0) TCGA-EI-6917-01 3 49755957 49755957 C T AMIGO3 Silent p.P314P 0.24 TCGA-EI-6917-01 3 50005880 50005880 A G RBM6 Missense_Mutation p.E341G 0.16 deleterious(0.05) benign(0.082) TCGA-EI-6917-01 3 50107968 50107968 C A RBM6 Nonsense_Mutation p.Y1033* 0.24 TCGA-EI-6917-01 3 50255116 50255116 C T SLC38A3 RNA 0.19 TCGA-EI-6917-01 3 50294191 50294191 G T GNAI2 Missense_Mutation p.K210N 0.27 deleterious(0) possibly_damaging(0.458) TCGA-EI-6917-01 3 50326322 50326322 C T IFRD2 Missense_Mutation p.R375H 0.25 deleterious(0.02) benign(0.075) TCGA-EI-6917-01 3 50357654 50357654 G A HYAL2 Silent p.F89F 0.32 TCGA-EI-6917-01 3 50388864 50388864 G A XXcos-LUCA11.5 5'UTR 0.26 TCGA-EI-6917-01 3 50421703 50421703 G A CACNA2D2 Silent p.I192I 0.24 TCGA-EI-6917-01 3 51265438 51265438 C A DOCK3 Silent p.L522L 0.35 TCGA-EI-6917-01 3 51399346 51399346 C T DOCK3 Missense_Mutation p.A1688V 0.21 deleterious_low_confidence(0.01) benign(0.098) TCGA-EI-6917-01 3 51431664 51431664 C A RBM15B 3'UTR 0.27 TCGA-EI-6917-01 3 51434778 51434778 C A RBM15B 3'UTR 0.23 TCGA-EI-6917-01 3 51504954 51504954 G A VPRBP Nonsense_Mutation p.R60* 0.23 TCGA-EI-6917-01 3 51505005 51505005 C A VPRBP Nonsense_Mutation p.E43* 0.22 TCGA-EI-6917-01 3 52097298 52097298 C T LINC00696 Silent p.T90T 0.33 TCGA-EI-6917-01 3 52238732 52238732 C T ALAS1 Missense_Mutation p.R201C 0.35 deleterious(0.03) benign(0.209) TCGA-EI-6917-01 3 52255745 52255745 G A TLR9 Nonsense_Mutation p.R1017* 0.29 TCGA-EI-6917-01 3 52430434 52430434 C T DNAH1 Silent p.F3770F 0.31 TCGA-EI-6917-01 3 52558714 52558714 G A NT5DC2 Silent p.F482F 0.40 TCGA-EI-6917-01 3 52643399 52643399 G A PBRM1 Missense_Mutation p.R833C 0.31 tolerated(0.11) possibly_damaging(0.744) TCGA-EI-6917-01 3 52728879 52728879 C A GLT8D1 Missense_Mutation p.E366D 0.21 tolerated_low_confidence(0.33) benign(0.001) TCGA-EI-6917-01 3 52729561 52729561 G A GLT8D1 Missense_Mutation p.R230C 0.25 deleterious(0) probably_damaging(0.986) TCGA-EI-6917-01 3 52825885 52825885 C T ITIH1 Silent p.I898I 0.26 TCGA-EI-6917-01 3 53222811 53222811 G A PRKCD Silent p.E497E 0.14 TCGA-EI-6917-01 3 53785881 53785881 G A CACNA1D Missense_Mutation p.E1228K 0.21 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 3 53804527 53804527 G A CACNA1D Missense_Mutation p.S1351N 0.13 tolerated(0.1) probably_damaging(0.993) TCGA-EI-6917-01 3 53814129 53814129 G A CACNA1D Missense_Mutation p.R1575Q 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-EI-6917-01 3 53836179 53836179 G A CACNA1D Missense_Mutation p.R1825H 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.754) TCGA-EI-6917-01 3 53898998 53898998 A C IL17RB Missense_Mutation p.K391T 0.26 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 3 56662518 56662518 A G FAM208A Splice_Site p.X1290_splice 0.24 TCGA-EI-6917-01 3 56916328 56916328 C T ARHGEF3 Missense_Mutation p.D62N 0.23 deleterious(0.01) possibly_damaging(0.63) TCGA-EI-6917-01 3 56916381 56916381 C T ARHGEF3 Missense_Mutation p.R44Q 0.29 tolerated(0.5) benign(0.006) TCGA-EI-6917-01 3 57131980 57131980 G A IL17RD Missense_Mutation p.S584L 0.24 deleterious_low_confidence(0.01) benign(0.062) TCGA-EI-6917-01 3 57144316 57144316 G A IL17RD Missense_Mutation p.R112W 0.27 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 3 57390717 57390717 C A DNAH12 Missense_Mutation p.R2226I 0.22 deleterious(0.01) possibly_damaging(0.639) TCGA-EI-6917-01 3 57419201 57419201 C A DNAH12 Nonsense_Mutation p.E1602* 0.30 TCGA-EI-6917-01 3 57438668 57438668 G A DNAH12 Missense_Mutation p.R1207C 0.28 tolerated(0.14) possibly_damaging(0.689) TCGA-EI-6917-01 3 57447303 57447303 C A DNAH12 Missense_Mutation p.E860D 0.26 tolerated(1) possibly_damaging(0.523) TCGA-EI-6917-01 3 57545301 57545301 G A PDE12 Missense_Mutation p.R467H 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 57563077 57563077 C A ARF4 Missense_Mutation p.R99I 0.40 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EI-6917-01 3 58395340 58395340 C T PXK Nonsense_Mutation p.R464* 0.24 TCGA-EI-6917-01 3 58739560 58739560 G A C3orf67 Silent p.I505I 0.33 TCGA-EI-6917-01 3 62356922 62356922 C T FEZF2 Missense_Mutation p.E364K 0.26 deleterious(0.01) possibly_damaging(0.881) TCGA-EI-6917-01 3 62860270 62860270 C T CADPS Silent p.Q145Q 0.30 TCGA-EI-6917-01 3 64132555 64132555 C T PRICKLE2 Silent p.E537E 0.25 TCGA-EI-6917-01 3 64636717 64636717 C T ADAMTS9 Missense_Mutation p.R480Q 0.25 tolerated(0.52) benign(0.273) TCGA-EI-6917-01 3 66444471 66444471 G A LRIG1 Silent p.F487F 0.22 TCGA-EI-6917-01 3 68055751 68055751 C T FAM19A1 Intron 0.24 TCGA-EI-6917-01 3 69073286 69073286 C A TMF1 Nonsense_Mutation p.E1020* 0.22 TCGA-EI-6917-01 3 69077095 69077095 C A TMF1 Nonsense_Mutation p.E905* 0.22 TCGA-EI-6917-01 3 69158258 69158258 T G LMOD3 Missense_Mutation p.K557N 0.27 tolerated(0.12) benign(0.06) TCGA-EI-6917-01 3 69168304 69168304 C T LMOD3 Missense_Mutation p.R401Q 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 3 69171438 69171438 C A LMOD3 Nonsense_Mutation p.E34* 0.31 TCGA-EI-6917-01 3 71591186 71591186 T G MIR1284 RNA 0.25 TCGA-EI-6917-01 3 71733746 71733746 C T EIF4E3 3'UTR 0.27 TCGA-EI-6917-01 3 71759605 71759605 G A EIF4E3 Silent p.C69C 0.23 TCGA-EI-6917-01 3 72864540 72864540 C T SHQ1 Nonsense_Mutation p.W299* 0.21 TCGA-EI-6917-01 3 73111356 73111356 C T EBLN2 Missense_Mutation p.R42W 0.27 deleterious_low_confidence(0) benign(0.097) TCGA-EI-6917-01 3 73112168 73112168 G T EBLN2 3'UTR 0.17 TCGA-EI-6917-01 3 73114012 73114012 G A PPP4R2 Silent p.S216S 0.30 TCGA-EI-6917-01 3 7340376 7340376 C A GRM7 Missense_Mutation p.L248I 0.27 tolerated(1) benign(0.011) TCGA-EI-6917-01 3 73432662 73432662 C T PDZRN3 Missense_Mutation p.E1019K 0.20 deleterious(0) possibly_damaging(0.604) TCGA-EI-6917-01 3 73433032 73433032 G A PDZRN3 Silent p.Y895Y 0.29 TCGA-EI-6917-01 3 73433943 73433943 C T PDZRN3 Missense_Mutation p.D592N 0.16 deleterious(0.01) benign(0.439) TCGA-EI-6917-01 3 74413745 74413745 C T CNTN3 Silent p.E362E 0.19 TCGA-EI-6917-01 3 7620497 7620497 G A GRM7 Missense_Mutation p.G635D 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 77600062 77600062 G A ROBO2 Missense_Mutation p.D401N 0.21 deleterious(0) possibly_damaging(0.831) TCGA-EI-6917-01 3 77638048 77638048 C T ROBO2 Nonsense_Mutation p.R899* 0.26 TCGA-EI-6917-01 3 78987789 78987789 C T ROBO1 Missense_Mutation p.G154E 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 81627124 81627124 G A GBE1 Nonsense_Mutation p.R524* 0.29 TCGA-EI-6917-01 3 85961540 85961540 G A CADM2 Missense_Mutation p.E176K 0.16 tolerated(0.45) benign(0.086) TCGA-EI-6917-01 3 8607327 8607327 C T LMCD1 Silent p.C311C 0.23 TCGA-EI-6917-01 3 87302886 87302886 C T CHMP2B Nonsense_Mutation p.R186* 0.23 TCGA-EI-6917-01 3 87310438 87310438 C T POU1F1 Missense_Mutation p.R243Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 3 87311383 87311383 A G POU1F1 Missense_Mutation p.Y174H 0.29 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 3 88041463 88041463 C A HTR1F 3'UTR 0.25 TCGA-EI-6917-01 3 93619656 93619656 G T PROS1 Missense_Mutation p.S240Y 0.23 deleterious(0) benign(0.213) TCGA-EI-6917-01 3 9476534 9476534 G T SETD5 Missense_Mutation p.R119I 0.24 tolerated(0.1) possibly_damaging(0.584) TCGA-EI-6917-01 3 95374184 95374184 G A MTHFD2P1 RNA 0.26 TCGA-EI-6917-01 3 96706300 96706300 A C EPHA6 Missense_Mutation p.K193Q 0.19 deleterious(0.02) possibly_damaging(0.849) TCGA-EI-6917-01 3 9691420 9691420 C T MTMR14 Silent p.G51G 0.19 TCGA-EI-6917-01 3 96945116 96945116 C T EPHA6 Missense_Mutation p.P375S 0.35 tolerated(0.21) benign(0.441) TCGA-EI-6917-01 3 97726660 97726660 G A GABRR3 Intron 0.16 TCGA-EI-6917-01 3 97806224 97806224 T G OR5AC2 Missense_Mutation p.F70V 0.26 deleterious(0.02) benign(0.378) TCGA-EI-6917-01 3 9803436 9803436 C A CAMK1 Missense_Mutation p.E145D 0.31 deleterious(0.01) benign(0.445) TCGA-EI-6917-01 3 98073044 98073044 C T OR5K4 Missense_Mutation p.A116V 0.20 tolerated(0.27) possibly_damaging(0.57) TCGA-EI-6917-01 3 98250978 98250978 T C GPR15 Missense_Mutation p.V34A 0.20 tolerated(0.06) benign(0.004) TCGA-EI-6917-01 3 98304363 98304363 T C CPOX Missense_Mutation p.Y365C 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 3 98506892 98506892 T C ST3GAL6 Silent p.G148G 0.20 TCGA-EI-6917-01 3 98506994 98506994 G A ST3GAL6 Silent p.T182T 0.22 TCGA-EI-6917-01 3 9911589 9911589 G A CIDEC Silent p.C187C 0.31 TCGA-EI-6917-01 3 99513798 99513798 G A COL8A1 Silent p.G351G 0.29 TCGA-EI-6917-01 3 9991651 9991651 G T PRRT3 Missense_Mutation p.S50Y 0.33 deleterious_low_confidence(0) benign(0.243) TCGA-EI-6917-01 4 100006274 100006274 G A ADH5 Nonsense_Mutation p.R36* 0.16 TCGA-EI-6917-01 4 100045434 100045434 G A ADH4 3'UTR 0.33 TCGA-EI-6917-01 4 100207992 100207992 A G ADH1A Intron 0.27 TCGA-EI-6917-01 4 100544138 100544138 A C MTTP 3'UTR 0.20 TCGA-EI-6917-01 4 101108987 101108987 C A DDIT4L Missense_Mutation p.E143D 0.23 tolerated(1) benign(0.015) TCGA-EI-6917-01 4 102776264 102776264 G T BANK1 Missense_Mutation p.R181I 0.17 deleterious(0.03) possibly_damaging(0.804) TCGA-EI-6917-01 4 103174431 103174431 C T SLC39A8 3'UTR 0.38 TCGA-EI-6917-01 4 103527741 103527741 G A NFKB1 Missense_Mutation p.R614H 0.29 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 4 103947504 103947504 T C SLC9B2 3'UTR 0.12 TCGA-EI-6917-01 4 10446035 10446035 T C ZNF518B Missense_Mutation p.S640G 0.20 deleterious(0) probably_damaging(0.985) TCGA-EI-6917-01 4 104640599 104640599 G A TACR3 Silent p.F78F 0.18 TCGA-EI-6917-01 4 106155544 106155544 G T TET2 Nonsense_Mutation p.E149* 0.32 TCGA-EI-6917-01 4 106374771 106374771 C T PPA2 Missense_Mutation p.R84Q 0.24 tolerated(0.14) benign(0.029) TCGA-EI-6917-01 4 106600402 106600402 C A ARHGEF38 3'UTR 0.28 TCGA-EI-6917-01 4 106746865 106746865 C T GSTCD Missense_Mutation p.R480C 0.37 deleterious(0.02) probably_damaging(0.93) TCGA-EI-6917-01 4 108816772 108816772 G A SGMS2 Silent p.T21T 0.22 TCGA-EI-6917-01 4 108816858 108816858 G A SGMS2 Missense_Mutation p.R50Q 0.28 tolerated(0.58) possibly_damaging(0.808) TCGA-EI-6917-01 4 109670473 109670473 C T ETNPPL Missense_Mutation p.G283D 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 4 109675802 109675802 C A ETNPPL Missense_Mutation p.D159Y 0.12 deleterious(0) possibly_damaging(0.81) TCGA-EI-6917-01 4 110451602 110451602 T G SEC24B Silent p.V1078V 0.30 TCGA-EI-6917-01 4 110662049 110662049 T G CFI Nonstop_Mutation p.*584Yext*24 0.23 TCGA-EI-6917-01 4 110670683 110670683 C T CFI Missense_Mutation p.R339Q 0.25 deleterious(0) probably_damaging(0.989) TCGA-EI-6917-01 4 110865088 110865088 G T EGF Missense_Mutation p.E200D 0.23 tolerated(0.18) benign(0.039) TCGA-EI-6917-01 4 111781757 111781757 A G MIR297 RNA 0.19 TCGA-EI-6917-01 4 113353573 113353573 C A ALPK1 Missense_Mutation p.S957Y 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-EI-6917-01 4 114163350 114163350 C T ANK2 Silent p.I292I 0.21 TCGA-EI-6917-01 4 114195696 114195696 C T ANK2 Missense_Mutation p.A525V 0.25 probably_damaging(0.971) TCGA-EI-6917-01 4 114214649 114214649 C T ANK2 Silent p.V810V 0.16 TCGA-EI-6917-01 4 114238867 114238867 C T ANK2 Nonsense_Mutation p.R900* 0.31 TCGA-EI-6917-01 4 114239712 114239712 C T ANK2 Missense_Mutation p.R946C 0.26 probably_damaging(0.961) TCGA-EI-6917-01 4 114275019 114275019 C A ANK2 Missense_Mutation p.P1749T 0.40 benign(0.025) TCGA-EI-6917-01 4 114278919 114278919 C T ANK2 Missense_Mutation p.R3049W 0.21 probably_damaging(1) TCGA-EI-6917-01 4 114286281 114286281 C T ANK2 Missense_Mutation p.R3659C 0.29 possibly_damaging(0.88) TCGA-EI-6917-01 4 115767138 115767139 - A NDST4 Frame_Shift_Ins p.T654Yfs*8 0.18 TCGA-EI-6917-01 4 119953007 119953007 C T SYNPO2 Missense_Mutation p.S1026L 0.41 deleterious(0) possibly_damaging(0.894) TCGA-EI-6917-01 4 120181689 120181689 C T USP53 Missense_Mutation p.R235C 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 4 120190884 120190884 G T USP53 Missense_Mutation p.D443Y 0.25 deleterious(0) possibly_damaging(0.897) TCGA-EI-6917-01 4 120442183 120442183 C A PDE5A Missense_Mutation p.K604N 0.26 deleterious(0) possibly_damaging(0.9) TCGA-EI-6917-01 4 121698437 121698437 C T PRDM5 Splice_Site p.X482_splice 0.20 TCGA-EI-6917-01 4 121706155 121706155 T G PRDM5 Missense_Mutation p.N427T 0.27 tolerated(1) possibly_damaging(0.549) TCGA-EI-6917-01 4 122068317 122068317 C T TNIP3 Missense_Mutation p.E285K 0.19 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 4 122723938 122723938 G A EXOSC9 Missense_Mutation p.E91K 0.23 deleterious(0) possibly_damaging(0.892) TCGA-EI-6917-01 4 122735126 122735126 C T EXOSC9 Silent p.G360G 0.26 TCGA-EI-6917-01 4 122749102 122749102 G T BBS7 Intron 0.33 TCGA-EI-6917-01 4 122833146 122833146 C T TRPC3 Missense_Mutation p.E482K 0.22 deleterious(0.04) benign(0.057) TCGA-EI-6917-01 4 123329162 123329162 T C ADAD1 Missense_Mutation p.V275A 0.22 deleterious(0) probably_damaging(0.936) TCGA-EI-6917-01 4 123665374 123665374 C A BBS12 3'UTR 0.31 TCGA-EI-6917-01 4 123833725 123833725 T C NUDT6 Missense_Mutation p.K166E 0.19 tolerated(0.08) benign(0.005) TCGA-EI-6917-01 4 124324155 124324155 C T SPRY1 3'UTR 0.18 TCGA-EI-6917-01 4 124324482 124324482 G A SPRY1 3'UTR 0.16 TCGA-EI-6917-01 4 126240692 126240692 T C FAT4 Silent p.D1042D 0.18 TCGA-EI-6917-01 4 126241511 126241511 C T FAT4 Silent p.F1315F 0.13 TCGA-EI-6917-01 4 126242577 126242577 C T FAT4 Missense_Mutation p.R1671C 0.24 possibly_damaging(0.77) TCGA-EI-6917-01 4 126371994 126371994 G A FAT4 Missense_Mutation p.D3275N 0.33 probably_damaging(0.995) TCGA-EI-6917-01 4 126389864 126389864 G T FAT4 Nonsense_Mutation p.E4033* 0.11 TCGA-EI-6917-01 4 126411597 126411597 G T FAT4 Missense_Mutation p.E4540D 0.38 benign(0.272) TCGA-EI-6917-01 4 128922887 128922887 C T C4orf29 Intron 0.29 TCGA-EI-6917-01 4 129099718 129099718 G A LARP1B Missense_Mutation p.R606Q 0.24 deleterious(0.03) benign(0.256) TCGA-EI-6917-01 4 1345520 1345520 G A UVSSA Silent p.T149T 0.22 TCGA-EI-6917-01 4 13601371 13601371 G A BOD1L1 Missense_Mutation p.R2385W 0.39 benign(0.394) TCGA-EI-6917-01 4 138442567 138442567 C A PCDH18 Missense_Mutation p.M1008I 0.13 tolerated(0.1) probably_damaging(0.985) TCGA-EI-6917-01 4 138452261 138452261 C A PCDH18 Missense_Mutation p.D328Y 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 4 138452734 138452734 G A PCDH18 Missense_Mutation p.S170F 0.21 deleterious(0.02) possibly_damaging(0.861) TCGA-EI-6917-01 4 139983069 139983069 C T ELF2 Silent p.K240K 0.28 TCGA-EI-6917-01 4 140812018 140812018 C T MAML3 Missense_Mutation p.R191Q 0.33 probably_damaging(0.996) TCGA-EI-6917-01 4 141321590 141321590 G A CLGN Silent p.F205F 0.16 TCGA-EI-6917-01 4 141578344 141578344 C G TBC1D9 Silent p.L748L 0.36 TCGA-EI-6917-01 4 142053564 142053564 C T RNF150 Silent p.R133R 0.21 TCGA-EI-6917-01 4 144141532 144141532 G A USP38 Missense_Mutation p.D1018N 0.18 tolerated(0.33) benign(0.081) TCGA-EI-6917-01 4 144141726 144141726 G T USP38 3'UTR 0.21 TCGA-EI-6917-01 4 146029234 146029234 G A ABCE1 Missense_Mutation p.R86Q 0.27 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 4 146044182 146044182 C T ABCE1 Missense_Mutation p.R425C 0.20 deleterious(0) probably_damaging(0.956) TCGA-EI-6917-01 4 146058570 146058570 C T OTUD4 3'UTR 0.24 TCGA-EI-6917-01 4 146474972 146474972 C T SMAD1 Missense_Mutation p.A345V 0.18 tolerated(0.07) possibly_damaging(0.707) TCGA-EI-6917-01 4 146686867 146686867 C T ZNF827 Missense_Mutation p.E962K 0.24 tolerated(0.17) possibly_damaging(0.749) TCGA-EI-6917-01 4 148744100 148744100 G T ARHGAP10 Nonsense_Mutation p.E102* 0.17 TCGA-EI-6917-01 4 151114393 151114393 G C DCLK2 Splice_Site p.X287_splice 0.28 TCGA-EI-6917-01 4 151124990 151124990 G A DCLK2 Silent p.T352T 0.15 TCGA-EI-6917-01 4 151505706 151505706 C A MAB21L2 3'UTR 0.23 TCGA-EI-6917-01 4 151682954 151682954 C T LRBA Missense_Mutation p.E1876K 0.27 deleterious(0) possibly_damaging(0.64) TCGA-EI-6917-01 4 151789427 151789427 C T LRBA Missense_Mutation p.R827Q 0.23 deleterious(0.02) probably_damaging(0.94) TCGA-EI-6917-01 4 151792586 151792586 G A LRBA Missense_Mutation p.L760F 0.36 tolerated(0.71) probably_damaging(0.987) TCGA-EI-6917-01 4 151829982 151829982 C T LRBA Missense_Mutation p.D397N 0.12 deleterious(0.05) probably_damaging(0.996) TCGA-EI-6917-01 4 152499212 152499212 A C FAM160A1 Missense_Mutation p.N239T 0.32 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 4 153258970 153258970 G T FBXW7 Nonsense_Mutation p.S282* 0.18 TCGA-EI-6917-01 4 153332667 153332667 C A FBXW7 Nonsense_Mutation p.E97* 0.24 TCGA-EI-6917-01 4 153691554 153691554 G A TIGD4 Silent p.G201G 0.34 TCGA-EI-6917-01 4 153864540 153864540 C T FHDC1 Nonsense_Mutation p.R111* 0.28 TCGA-EI-6917-01 4 153897525 153897525 G A FHDC1 Missense_Mutation p.E1028K 0.21 tolerated(0.92) benign(0.032) TCGA-EI-6917-01 4 154514956 154514956 G A KIAA0922 Missense_Mutation p.G643D 0.12 tolerated(0.2) benign(0.398) TCGA-EI-6917-01 4 154557472 154557472 G A KIAA0922 Missense_Mutation p.R1526Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 4 154625325 154625325 G T TLR2 Missense_Mutation p.K422N 0.18 deleterious(0.01) probably_damaging(0.972) TCGA-EI-6917-01 4 154625500 154625500 G T TLR2 Nonsense_Mutation p.E481* 0.24 TCGA-EI-6917-01 4 15517516 15517516 G A CC2D2A Silent p.E302E 0.23 TCGA-EI-6917-01 4 155250772 155250772 C T DCHS2 Missense_Mutation p.R819Q 0.24 tolerated(0.25) benign(0.122) TCGA-EI-6917-01 4 155383 155383 G A ZNF718 RNA 0.20 TCGA-EI-6917-01 4 155467 155467 G A ZNF718 RNA 0.21 TCGA-EI-6917-01 4 155505307 155505307 C T FGA Missense_Mutation p.R857H 0.29 deleterious(0.02) benign(0.329) TCGA-EI-6917-01 4 155505761 155505761 C A FGA Nonsense_Mutation p.E706* 0.24 TCGA-EI-6917-01 4 155508746 155508746 C T FGA Missense_Mutation p.R143H 0.19 tolerated(0.06) possibly_damaging(0.526) TCGA-EI-6917-01 4 15565117 15565117 G A CC2D2A Missense_Mutation p.D1052N 0.29 tolerated(0.5) benign(0.139) TCGA-EI-6917-01 4 155838 155838 G T ZNF718 RNA 0.13 TCGA-EI-6917-01 4 156278668 156278668 T C MAP9 Missense_Mutation p.T352A 0.21 tolerated(0.42) benign(0.009) TCGA-EI-6917-01 4 156632396 156632396 C A GUCY1A3 Missense_Mutation p.S360Y 0.24 deleterious(0.04) benign(0.024) TCGA-EI-6917-01 4 156651452 156651452 A G GUCY1A3 3'UTR 0.40 TCGA-EI-6917-01 4 156721101 156721101 C T GUCY1B3 Silent p.R350R 0.37 TCGA-EI-6917-01 4 156864307 156864307 C T CTSO Splice_Site p.X82_splice 0.17 TCGA-EI-6917-01 4 157771544 157771544 C A PDGFC Missense_Mutation p.R48I 0.19 deleterious(0.01) possibly_damaging(0.882) TCGA-EI-6917-01 4 158091671 158091671 G T GLRB Missense_Mutation p.D429Y 0.26 deleterious(0.01) probably_damaging(0.934) TCGA-EI-6917-01 4 158255191 158255191 G T GRIA2 Missense_Mutation p.M395I 0.17 tolerated(0.09) benign(0.002) TCGA-EI-6917-01 4 159443114 159443114 C T RXFP1 5'UTR 0.30 TCGA-EI-6917-01 4 159636547 159636547 T G PPID Missense_Mutation p.K218N 0.21 tolerated(0.52) benign(0.397) TCGA-EI-6917-01 4 159956335 159956335 C T C4orf45 5'Flank 0.26 TCGA-EI-6917-01 4 160235806 160235806 G A RAPGEF2 Missense_Mutation p.E86K 0.28 deleterious(0) probably_damaging(0.973) TCGA-EI-6917-01 4 160253809 160253809 G A RAPGEF2 Missense_Mutation p.D538N 0.16 tolerated(0.14) benign(0.013) TCGA-EI-6917-01 4 160277115 160277115 G A RAPGEF2 Missense_Mutation p.D1427N 0.22 deleterious_low_confidence(0) possibly_damaging(0.752) TCGA-EI-6917-01 4 162307501 162307501 C T FSTL5 Missense_Mutation p.V648I 0.17 tolerated(0.68) benign(0) TCGA-EI-6917-01 4 164048125 164048125 A G NAF1 3'Flank 0.33 TCGA-EI-6917-01 4 164054387 164054387 C A NAF1 Nonsense_Mutation p.E318* 0.23 TCGA-EI-6917-01 4 164272695 164272695 C A NPY5R Missense_Mutation p.L424I 0.19 deleterious(0.04) probably_damaging(0.995) TCGA-EI-6917-01 4 164272851 164272851 A C NPY5R 3'UTR 0.28 TCGA-EI-6917-01 4 16513690 16513690 G A LDB2 Missense_Mutation p.S218L 0.25 deleterious(0) probably_damaging(0.909) TCGA-EI-6917-01 4 165879902 165879902 T C FAM218A 3'UTR 0.25 TCGA-EI-6917-01 4 165890878 165890878 C A TRIM61 Nonsense_Mutation p.E93* 0.15 TCGA-EI-6917-01 4 166231767 166231767 C T KLHL2 Missense_Mutation p.R372C 0.28 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 4 166963186 166963186 C A TLL1 Missense_Mutation p.F423L 0.24 tolerated(0.14) benign(0.243) TCGA-EI-6917-01 4 167022090 167022090 T A TLL1 3'UTR 0.24 TCGA-EI-6917-01 4 167675755 167675755 C A SPOCK3 Nonsense_Mutation p.E282* 0.22 TCGA-EI-6917-01 4 169294955 169294955 G T DDX60L Missense_Mutation p.F1546L 0.24 deleterious(0) possibly_damaging(0.53) TCGA-EI-6917-01 4 169362566 169362566 C A DDX60L Nonsense_Mutation p.E406* 0.26 TCGA-EI-6917-01 4 169432994 169432994 C A PALLD Silent p.I113I 0.24 TCGA-EI-6917-01 4 170913192 170913192 G T MFAP3L Missense_Mutation p.F189L 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6917-01 4 174216610 174216610 G A GALNT7 Missense_Mutation p.R273Q 0.27 deleterious(0.01) probably_damaging(0.949) TCGA-EI-6917-01 4 174223246 174223246 C A GALNT7 Missense_Mutation p.F399L 0.24 deleterious(0.02) possibly_damaging(0.558) TCGA-EI-6917-01 4 174449832 174449832 G A HAND2 Intron 0.26 TCGA-EI-6917-01 4 175184062 175184062 T G FBXO8 Missense_Mutation p.K61T 0.22 tolerated(0.09) benign(0.011) TCGA-EI-6917-01 4 175229858 175229858 C T CEP44 Missense_Mutation p.R176C 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 4 17583415 17583415 G A LAP3 Missense_Mutation p.R84Q 0.26 deleterious(0.02) probably_damaging(0.973) TCGA-EI-6917-01 4 17583992 17583992 G T LAP3 Nonsense_Mutation p.E119* 0.17 TCGA-EI-6917-01 4 17609065 17609065 C T LAP3 Silent p.F471F 0.30 TCGA-EI-6917-01 4 177058704 177058704 G A WDR17 Missense_Mutation p.R458Q 0.21 tolerated(0.12) benign(0.004) TCGA-EI-6917-01 4 178283629 178283629 C T NEIL3 3'UTR 0.19 TCGA-EI-6917-01 4 183650268 183650268 G A TENM3 Missense_Mutation p.R840Q 0.23 deleterious(0.02) possibly_damaging(0.602) TCGA-EI-6917-01 4 183676061 183676061 C T TENM3 Missense_Mutation p.A1514V 0.34 tolerated(0.2) benign(0.011) TCGA-EI-6917-01 4 183713469 183713469 G A TENM3 Missense_Mutation p.E1882K 0.19 deleterious(0) possibly_damaging(0.651) TCGA-EI-6917-01 4 184166599 184166599 C T WWC2 Silent p.S211S 0.20 TCGA-EI-6917-01 4 184207126 184207126 C T WWC2 Missense_Mutation p.R1019W 0.25 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 4 184236972 184236972 G T WWC2 3'UTR 0.40 TCGA-EI-6917-01 4 184932407 184932407 C A STOX2 Missense_Mutation p.L806I 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.532) TCGA-EI-6917-01 4 185724570 185724570 G A ACSL1 Silent p.F33F 0.18 TCGA-EI-6917-01 4 186244906 186244906 A C SNX25 Missense_Mutation p.K403N 0.27 tolerated(0.21) benign(0.04) TCGA-EI-6917-01 4 186298210 186298210 A C LRP2BP Intron 0.32 TCGA-EI-6917-01 4 186334996 186334996 C T UFSP2 Missense_Mutation p.D239N 0.25 tolerated(0.15) benign(0.008) TCGA-EI-6917-01 4 186379985 186379985 C A CCDC110 Nonsense_Mutation p.E586* 0.25 TCGA-EI-6917-01 4 186567839 186567839 G T SORBS2 Missense_Mutation p.L323I 0.13 deleterious(0) possibly_damaging(0.615) TCGA-EI-6917-01 4 187131662 187131662 C T CYP4V2 Missense_Mutation p.S482L 0.21 deleterious(0) possibly_damaging(0.686) TCGA-EI-6917-01 4 187175765 187175765 G A KLKB1 Missense_Mutation p.R446H 0.23 tolerated(0.12) benign(0.033) TCGA-EI-6917-01 4 187205296 187205296 C T F11 Missense_Mutation p.R396C 0.28 tolerated(0.18) possibly_damaging(0.495) TCGA-EI-6917-01 4 187454831 187454831 C T MTNR1A 3'UTR 0.30 TCGA-EI-6917-01 4 187454960 187454960 C T MTNR1A Silent p.S312S 0.30 TCGA-EI-6917-01 4 187516861 187516861 C T FAT1 Missense_Mutation p.E4374K 0.15 probably_damaging(0.955) TCGA-EI-6917-01 4 187530348 187530348 C T FAT1 Missense_Mutation p.D3399N 0.22 probably_damaging(0.987) TCGA-EI-6917-01 4 187540671 187540671 T G FAT1 Missense_Mutation p.T2357P 0.28 benign(0.116) TCGA-EI-6917-01 4 187541478 187541478 C T FAT1 Missense_Mutation p.A2088T 0.16 probably_damaging(0.999) TCGA-EI-6917-01 4 187542151 187542151 C T FAT1 Silent p.A1863A 0.23 TCGA-EI-6917-01 4 188924697 188924697 C T ZFP42 Missense_Mutation p.R246W 0.41 deleterious(0) possibly_damaging(0.474) TCGA-EI-6917-01 4 189061017 189061017 C A TRIML1 Missense_Mutation p.A102D 0.12 tolerated(0.63) benign(0.046) TCGA-EI-6917-01 4 1902876 1902876 G A WHSC1 Silent p.A165A 0.38 TCGA-EI-6917-01 4 1959735 1959735 G A WHSC1 Missense_Mutation p.R986H 0.19 deleterious(0) probably_damaging(0.97) TCGA-EI-6917-01 4 20255473 20255473 C T SLIT2 Missense_Mutation p.S12L 0.35 tolerated_low_confidence(0.73) benign(0.177) TCGA-EI-6917-01 4 20533608 20533608 C T SLIT2 Missense_Mutation p.R539C 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 4 20533652 20533652 C A SLIT2 Silent p.I553I 0.19 TCGA-EI-6917-01 4 20598263 20598263 G A SLIT2 Silent p.T1182T 0.20 TCGA-EI-6917-01 4 20599966 20599966 C T SLIT2 Missense_Mutation p.R1214C 0.24 deleterious(0) possibly_damaging(0.851) TCGA-EI-6917-01 4 20618759 20618759 C T SLIT2 Silent p.C1358C 0.24 TCGA-EI-6917-01 4 2073859 2073859 C T POLN Silent p.S895S 0.16 TCGA-EI-6917-01 4 22389413 22389413 C T GPR125 Missense_Mutation p.S1294N 0.28 tolerated(0.15) benign(0) TCGA-EI-6917-01 4 22390389 22390389 C T GPR125 Missense_Mutation p.E969K 0.33 tolerated(0.84) benign(0.196) TCGA-EI-6917-01 4 2242087 2242087 G A HAUS3 Missense_Mutation p.S196L 0.24 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 4 2252882 2252882 G A MXD4 Missense_Mutation p.S134L 0.23 tolerated(0.14) probably_damaging(0.981) TCGA-EI-6917-01 4 2252913 2252913 G A MXD4 Missense_Mutation p.R124C 0.31 deleterious(0) possibly_damaging(0.841) TCGA-EI-6917-01 4 2272370 2272370 G A ZFYVE28 3'UTR 0.17 TCGA-EI-6917-01 4 22748937 22748937 A C GBA3 Missense_Mutation p.K102T 0.12 tolerated(0.07) benign(0.306) TCGA-EI-6917-01 4 22748954 22748954 T C GBA3 Silent p.L108L 0.30 TCGA-EI-6917-01 4 24809937 24809937 G A CCDC149 3'UTR 0.20 TCGA-EI-6917-01 4 25665906 25665906 C T SLC34A2 Silent p.F111F 0.21 TCGA-EI-6917-01 4 25678236 25678236 G T SLC34A2 Missense_Mutation p.E646D 0.43 tolerated(0.28) benign(0.003) TCGA-EI-6917-01 4 25678388 25678388 T G SLC34A2 3'UTR 0.29 TCGA-EI-6917-01 4 26364188 26364188 G A RBPJ Intron 0.40 TCGA-EI-6917-01 4 265184 265184 C T ZNF732 Missense_Mutation p.A488T 0.22 tolerated(1) benign(0) TCGA-EI-6917-01 4 27010424 27010424 G A STIM2 Missense_Mutation p.R438Q 0.14 deleterious(0.01) probably_damaging(0.986) TCGA-EI-6917-01 4 2899955 2899955 G A ADD1 Silent p.A262A 0.23 TCGA-EI-6917-01 4 2945884 2945884 C T NOP14 Missense_Mutation p.A603T 0.20 tolerated(0.18) benign(0.069) TCGA-EI-6917-01 4 30724874 30724874 C T PCDH7 Silent p.N610N 0.14 TCGA-EI-6917-01 4 30732436 30732436 T G PCDH7 Intron 0.25 TCGA-EI-6917-01 4 3208651 3208651 C T HTT Missense_Mutation p.R2006C 0.18 probably_damaging(0.931) TCGA-EI-6917-01 4 3318854 3318854 G A RGS12 Silent p.T319T 0.24 TCGA-EI-6917-01 4 37446094 37446094 C T KIAA1239 Silent p.F828F 0.12 TCGA-EI-6917-01 4 37447661 37447661 G A KIAA1239 Missense_Mutation p.E1351K 0.19 tolerated(0.05) possibly_damaging(0.722) TCGA-EI-6917-01 4 3769694 3769694 G A ADRA2C Missense_Mutation p.R454Q 0.27 deleterious(0.03) unknown(0) TCGA-EI-6917-01 4 37847308 37847308 G T PGM2 Missense_Mutation p.D322Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 4 38023219 38023219 A G TBC1D1 Missense_Mutation p.M364V 0.16 deleterious(0) benign(0.124) TCGA-EI-6917-01 4 38775278 38775278 G A TLR10 Missense_Mutation p.S645F 0.22 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 4 38775656 38775656 G A TLR10 Missense_Mutation p.A519V 0.20 deleterious(0.04) benign(0.043) TCGA-EI-6917-01 4 38799481 38799481 C T TLR1 Silent p.S324S 0.19 TCGA-EI-6917-01 4 38828781 38828781 G A TLR6 Missense_Mutation p.L772F 0.26 deleterious(0.04) benign(0.301) TCGA-EI-6917-01 4 38880018 38880018 G A FAM114A1 Missense_Mutation p.E107K 0.28 tolerated(0.05) possibly_damaging(0.509) TCGA-EI-6917-01 4 39083717 39083717 C T KLHL5 Missense_Mutation p.R326C 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 4 39310294 39310294 C T RFC1 Missense_Mutation p.R616Q 0.25 tolerated(0.72) benign(0.002) TCGA-EI-6917-01 4 39328210 39328210 C T RFC1 Silent p.K205K 0.25 TCGA-EI-6917-01 4 3954899 3954899 C T FAM86EP Intron 0.16 TCGA-EI-6917-01 4 39878648 39878648 A G PDS5A Silent p.G706G 0.12 TCGA-EI-6917-01 4 41265248 41265248 G T UCHL1 Missense_Mutation p.D156Y 0.27 deleterious(0) probably_damaging(0.953) TCGA-EI-6917-01 4 41684442 41684442 G T LIMCH1 Missense_Mutation p.K886N 0.20 tolerated(0.12) benign(0.011) TCGA-EI-6917-01 4 42025361 42025361 G T SLC30A9 Missense_Mutation p.E190D 0.25 deleterious(0.01) benign(0.274) TCGA-EI-6917-01 4 42119697 42119697 C T BEND4 Silent p.E481E 0.31 TCGA-EI-6917-01 4 42581868 42581868 C T ATP8A1 Missense_Mutation p.R321Q 0.21 tolerated(0.43) benign(0.002) TCGA-EI-6917-01 4 4304391 4304391 C T ZBTB49 Silent p.F276F 0.38 TCGA-EI-6917-01 4 436022 436022 T G ZNF721 Missense_Mutation p.K745T 0.41 tolerated(0.05) benign(0.065) TCGA-EI-6917-01 4 436526 436526 C T ZNF721 Missense_Mutation p.R577K 0.25 tolerated(0.14) possibly_damaging(0.494) TCGA-EI-6917-01 4 436610 436610 C T ZNF721 Missense_Mutation p.R549K 0.25 tolerated(0.12) possibly_damaging(0.565) TCGA-EI-6917-01 4 437702 437702 C A ZNF721 Missense_Mutation p.R185I 0.23 tolerated(0.13) possibly_damaging(0.53) TCGA-EI-6917-01 4 46042899 46042899 C T GABRG1 3'UTR 0.25 TCGA-EI-6917-01 4 46252351 46252351 C A GABRA2 Nonsense_Mutation p.E444* 0.19 TCGA-EI-6917-01 4 46263814 46263814 G T GABRA2 Intron 0.45 TCGA-EI-6917-01 4 46264094 46264094 G T GABRA2 Missense_Mutation p.S303Y 0.25 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 4 46390673 46390673 G T GABRA2 Missense_Mutation p.F17L 0.21 tolerated_low_confidence(0.41) benign(0) TCGA-EI-6917-01 4 47033696 47033696 C A GABRB1 Missense_Mutation p.L10M 0.35 tolerated_low_confidence(0.13) benign(0.418) TCGA-EI-6917-01 4 47945286 47945286 C T CNGA1 Missense_Mutation p.E190K 0.24 tolerated(0.14) benign(0.003) TCGA-EI-6917-01 4 48151699 48151699 G T TEC Nonsense_Mutation p.S294* 0.27 TCGA-EI-6917-01 4 48384774 48384774 G A SLAIN2 Missense_Mutation p.R351Q 0.25 tolerated(0.1) possibly_damaging(0.552) TCGA-EI-6917-01 4 48486155 48486155 G A SLC10A4 Missense_Mutation p.D193N 0.30 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 4 52895881 52895881 C T SGCB Missense_Mutation p.R131Q 0.24 tolerated(0.18) benign(0.434) TCGA-EI-6917-01 4 54362536 54362536 A G LNX1 Missense_Mutation p.V335A 0.28 deleterious(0) possibly_damaging(0.896) TCGA-EI-6917-01 4 55152109 55152109 G A PDGFRA Silent p.S847S 0.41 TCGA-EI-6917-01 4 55561832 55561832 G A KIT Silent p.T74T 0.19 TCGA-EI-6917-01 4 55569904 55569904 G T KIT Missense_Mutation p.E257D 0.25 tolerated(0.62) benign(0.011) TCGA-EI-6917-01 4 55964954 55964954 C T KDR Silent p.T761T 0.26 TCGA-EI-6917-01 4 55970847 55970847 C A KDR Missense_Mutation p.K650N 0.18 tolerated(0.16) benign(0.081) TCGA-EI-6917-01 4 55976728 55976728 T G KDR Missense_Mutation p.K366T 0.31 deleterious(0) possibly_damaging(0.861) TCGA-EI-6917-01 4 55984888 55984888 C T KDR Missense_Mutation p.D81N 0.31 tolerated(0.12) benign(0.251) TCGA-EI-6917-01 4 56283977 56283977 G A TMEM165 Missense_Mutation p.R206Q 0.24 tolerated(0.08) benign(0.09) TCGA-EI-6917-01 4 5633692 5633692 G T EVC2 Missense_Mutation p.S513Y 0.29 tolerated(0.41) probably_damaging(0.975) TCGA-EI-6917-01 4 5642516 5642516 G A EVC2 Nonsense_Mutation p.R399* 0.18 TCGA-EI-6917-01 4 56435985 56435985 T G PDCL2 Missense_Mutation p.K88Q 0.28 deleterious(0.04) possibly_damaging(0.805) TCGA-EI-6917-01 4 56734600 56734600 G A EXOC1 Missense_Mutation p.E172K 0.23 tolerated(0.2) possibly_damaging(0.811) TCGA-EI-6917-01 4 56847393 56847393 G A CEP135 Missense_Mutation p.A543T 0.29 tolerated(0.05) benign(0.034) TCGA-EI-6917-01 4 57267499 57267499 C T PPAT Missense_Mutation p.E295K 0.27 deleterious(0.01) possibly_damaging(0.643) TCGA-EI-6917-01 4 57352558 57352558 C A SRP72 Missense_Mutation p.S385Y 0.23 deleterious(0.04) benign(0.308) TCGA-EI-6917-01 4 5750009 5750009 C T EVC Silent p.C358C 0.28 TCGA-EI-6917-01 4 5798756 5798756 C T EVC Missense_Mutation p.R632W 0.12 tolerated(0.13) benign(0.006) TCGA-EI-6917-01 4 62775417 62775417 A G LPHN3 Missense_Mutation p.N608S 0.18 tolerated(0.55) possibly_damaging(0.9) TCGA-EI-6917-01 4 62936156 62936156 G A LPHN3 Missense_Mutation p.E1314K 0.17 tolerated_low_confidence(0.08) possibly_damaging(0.796) TCGA-EI-6917-01 4 629747 629747 C T PDE6B Missense_Mutation p.R234C 0.32 deleterious(0) probably_damaging(0.953) TCGA-EI-6917-01 4 6599020 6599020 C T MAN2B2 Missense_Mutation p.A413V 0.28 deleterious(0.05) probably_damaging(0.919) TCGA-EI-6917-01 4 6622980 6622980 C T MAN2B2 Missense_Mutation p.R1000W 0.32 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 4 66467434 66467434 C T EPHA5 Missense_Mutation p.E279K 0.32 deleterious(0) probably_damaging(0.955) TCGA-EI-6917-01 4 66467590 66467590 G A EPHA5 Missense_Mutation p.R227C 0.16 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 4 6864664 6864664 C T KIAA0232 Missense_Mutation p.S852L 0.24 deleterious(0.02) benign(0.165) TCGA-EI-6917-01 4 6865325 6865325 G A KIAA0232 Silent p.P1072P 0.23 TCGA-EI-6917-01 4 68797770 68797770 C A TMPRSS11A Missense_Mutation p.E90D 0.23 tolerated(0.21) benign(0.027) TCGA-EI-6917-01 4 68928188 68928188 C T TMPRSS11F Intron 0.38 TCGA-EI-6917-01 4 69107502 69107502 C A TMPRSS11B Missense_Mutation p.R10I 0.20 deleterious(0.02) possibly_damaging(0.564) TCGA-EI-6917-01 4 69197845 69197845 C A YTHDC1 Missense_Mutation p.E366D 0.28 deleterious(0.05) possibly_damaging(0.765) TCGA-EI-6917-01 4 69203573 69203573 C T YTHDC1 Missense_Mutation p.R59Q 0.32 deleterious_low_confidence(0.01) unknown(0) TCGA-EI-6917-01 4 69203597 69203597 C T YTHDC1 Missense_Mutation p.R51Q 0.19 tolerated_low_confidence(0.13) unknown(0) TCGA-EI-6917-01 4 69344588 69344588 G A TMPRSS11E Missense_Mutation p.R330Q 0.24 tolerated(0.15) benign(0.034) TCGA-EI-6917-01 4 69512933 69512933 C A UGT2B15 Silent p.V494V 0.22 TCGA-EI-6917-01 4 69536161 69536161 G A UGT2B15 Missense_Mutation p.S59L 0.26 deleterious(0.01) benign(0.344) TCGA-EI-6917-01 4 69696436 69696436 C T UGT2B10 Nonsense_Mutation p.R476* 0.25 TCGA-EI-6917-01 4 69962910 69962910 C T UGT2B7 Silent p.F224F 0.31 TCGA-EI-6917-01 4 70160262 70160262 T C UGT2B28 Missense_Mutation p.V442A 0.28 tolerated(1) benign(0.005) TCGA-EI-6917-01 4 70513326 70513326 T G UGT2A1 Missense_Mutation p.S13R 0.14 deleterious(0.04) possibly_damaging(0.701) TCGA-EI-6917-01 4 70811918 70811918 G A CSN1S1 3'UTR 0.28 TCGA-EI-6917-01 4 71201039 71201039 G T CABS1 Nonsense_Mutation p.E95* 0.24 TCGA-EI-6917-01 4 71508532 71508532 G A ENAM Silent p.Q463Q 0.26 TCGA-EI-6917-01 4 71510331 71510331 C T ENAM Missense_Mutation p.A1063V 0.37 deleterious(0.02) possibly_damaging(0.897) TCGA-EI-6917-01 4 71522209 71522209 A G IGJ Missense_Mutation p.V106A 0.27 tolerated(0.25) possibly_damaging(0.79) TCGA-EI-6917-01 4 72399978 72399978 C T SLC4A4 Missense_Mutation p.P772L 0.25 deleterious(0.03) possibly_damaging(0.573) TCGA-EI-6917-01 4 73148764 73148764 G A ADAMTS3 3'UTR 0.20 TCGA-EI-6917-01 4 73178168 73178168 A G ADAMTS3 Silent p.G587G 0.25 TCGA-EI-6917-01 4 74285296 74285296 C T ALB Silent p.F575F 0.19 TCGA-EI-6917-01 4 74350026 74350026 G T AFM Missense_Mutation p.M63I 0.22 tolerated(0.25) benign(0.004) TCGA-EI-6917-01 4 7435018 7435018 C T PSAPL1 3'UTR 0.22 TCGA-EI-6917-01 4 74442344 74442344 C A RASSF6 Nonsense_Mutation p.E308* 0.38 TCGA-EI-6917-01 4 74735691 74735691 A G CXCL1 Missense_Mutation p.E98G 0.20 tolerated(0.05) benign(0.02) TCGA-EI-6917-01 4 75250449 75250449 G A EREG Missense_Mutation p.R145K 0.22 tolerated(0.68) benign(0.002) TCGA-EI-6917-01 4 76447217 76447217 A G THAP6 Intron 0.26 TCGA-EI-6917-01 4 76489526 76489526 C T C4orf26 Missense_Mutation p.S105L 0.47 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-EI-6917-01 4 76720859 76720859 C A USO1 Missense_Mutation p.L522I 0.21 deleterious(0.03) possibly_damaging(0.723) TCGA-EI-6917-01 4 76722345 76722345 C T USO1 Nonsense_Mutation p.R669* 0.19 TCGA-EI-6917-01 4 7677945 7677945 G A SORCS2 Missense_Mutation p.D444N 0.27 deleterious(0.02) benign(0.19) TCGA-EI-6917-01 4 76781907 76781907 C T PPEF2 Silent p.E725E 0.24 TCGA-EI-6917-01 4 76797712 76797712 C T PPEF2 Missense_Mutation p.E350K 0.22 tolerated(0.52) benign(0.002) TCGA-EI-6917-01 4 76797825 76797825 A G PPEF2 Missense_Mutation p.I312T 0.26 tolerated(0.13) benign(0.259) TCGA-EI-6917-01 4 77234393 77234393 G A CCDC158 Missense_Mutation p.S1091F 0.31 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 4 77305271 77305271 C A CCDC158 Missense_Mutation p.E232D 0.37 tolerated(0.11) probably_damaging(0.979) TCGA-EI-6917-01 4 77816781 77816781 G T SOWAHB Missense_Mutation p.S741Y 0.26 deleterious(0) possibly_damaging(0.608) TCGA-EI-6917-01 4 77977475 77977475 G A CCNI Missense_Mutation p.A82V 0.20 tolerated(0.06) benign(0.424) TCGA-EI-6917-01 4 78532225 78532225 C A CXCL13 3'UTR 0.30 TCGA-EI-6917-01 4 79308556 79308556 C A FRAS1 Missense_Mutation p.L1226I 0.26 probably_damaging(0.999) TCGA-EI-6917-01 4 79428588 79428588 C T FRAS1 Silent p.I3110I 0.17 TCGA-EI-6917-01 4 8010817 8010817 G A ABLIM2 Missense_Mutation p.S479L 0.26 tolerated(0.23) benign(0) TCGA-EI-6917-01 4 81952513 81952513 G A BMP3 Silent p.P25P 0.15 TCGA-EI-6917-01 4 82056359 82056359 C A PRKG2 Missense_Mutation p.D576Y 0.22 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 4 82362046 82362046 C T RASGEF1B Missense_Mutation p.R349Q 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 4 82369392 82369392 C T RASGEF1B Missense_Mutation p.R162H 0.27 tolerated(0.59) benign(0.01) TCGA-EI-6917-01 4 82377918 82377918 T C RASGEF1B Missense_Mutation p.K109E 0.17 deleterious(0.01) possibly_damaging(0.45) TCGA-EI-6917-01 4 83601986 83601986 C T SCD5 Missense_Mutation p.R148H 0.08 deleterious(0.04) benign(0.055) TCGA-EI-6917-01 4 84328587 84328587 A C HELQ 3'UTR 0.26 TCGA-EI-6917-01 4 84370084 84370084 G T HELQ Missense_Mutation p.S348Y 0.23 deleterious(0.01) possibly_damaging(0.905) TCGA-EI-6917-01 4 84519218 84519218 C T AGPAT9 Silent p.F337F 0.32 TCGA-EI-6917-01 4 85555012 85555012 C T CDS1 Silent p.F214F 0.19 TCGA-EI-6917-01 4 85657363 85657363 C T WDFY3 Missense_Mutation p.R2292Q 0.30 deleterious(0.01) benign(0.012) TCGA-EI-6917-01 4 8621145 8621145 G A CPZ Missense_Mutation p.G587E 0.28 tolerated(0.81) benign(0.002) TCGA-EI-6917-01 4 87622484 87622484 G A PTPN13 Missense_Mutation p.G242E 0.28 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 4 87622557 87622557 A C PTPN13 Missense_Mutation p.E266D 0.38 tolerated(0.05) possibly_damaging(0.579) TCGA-EI-6917-01 4 88099725 88099725 G A KLHL8 Missense_Mutation p.R334C 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 4 88533818 88533818 G T DSPP Missense_Mutation p.K160N 0.25 benign(0.198) TCGA-EI-6917-01 4 88584035 88584035 G A DMP1 Missense_Mutation p.D369N 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-EI-6917-01 4 88584287 88584287 G A DMP1 Missense_Mutation p.D453N 0.20 tolerated(0.07) unknown(0) TCGA-EI-6917-01 4 89199527 89199527 C T PPM1K Missense_Mutation p.R70H 0.18 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 4 89329691 89329691 G A HERC6 Silent p.T430T 0.19 TCGA-EI-6917-01 4 89425453 89425453 C T HERC5 Missense_Mutation p.R885W 0.27 deleterious(0) possibly_damaging(0.862) TCGA-EI-6917-01 4 90844362 90844362 T C MMRN1 Silent p.S298S 0.24 TCGA-EI-6917-01 4 90856092 90856092 G A MMRN1 Missense_Mutation p.E421K 0.26 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 4 90856667 90856667 G T MMRN1 Missense_Mutation p.E612D 0.24 deleterious(0.03) probably_damaging(0.996) TCGA-EI-6917-01 4 92519733 92519733 G A CCSER1 Missense_Mutation p.R743Q 0.19 tolerated_low_confidence(0.19) benign(0.005) TCGA-EI-6917-01 4 92519867 92519867 C A CCSER1 Missense_Mutation p.L788I 0.18 deleterious_low_confidence(0.02) benign(0.031) TCGA-EI-6917-01 4 94145923 94145923 G T GRID2 Missense_Mutation p.K374N 0.20 deleterious(0.01) possibly_damaging(0.777) TCGA-EI-6917-01 4 94159636 94159636 C T GRID2 Nonsense_Mutation p.R414* 0.16 TCGA-EI-6917-01 4 94750329 94750329 C T ATOH1 Silent p.S84S 0.28 TCGA-EI-6917-01 4 95173839 95173839 A C SMARCAD1 Missense_Mutation p.K321T 0.33 tolerated(0.14) benign(0.017) TCGA-EI-6917-01 4 95201845 95201845 A C SMARCAD1 Missense_Mutation p.N843H 0.33 tolerated(0.25) benign(0.007) TCGA-EI-6917-01 4 95539344 95539344 T C PDLIM5 Splice_Site p.X399_splice 0.26 TCGA-EI-6917-01 4 96137273 96137273 A G UNC5C Splice_Site p.X578_splice 0.20 TCGA-EI-6917-01 4 96171767 96171767 A C UNC5C Missense_Mutation p.F216V 0.23 tolerated(0.39) probably_damaging(0.981) TCGA-EI-6917-01 4 96256586 96256586 T G UNC5C Silent p.V107V 0.30 TCGA-EI-6917-01 4 96761557 96761557 C T PDHA2 Missense_Mutation p.R86C 0.21 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 4 96762295 96762295 G T PDHA2 Nonsense_Mutation p.E332* 0.24 TCGA-EI-6917-01 4 9784011 9784011 G A DRD5 Missense_Mutation p.D120N 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 4 9785250 9785250 G A DRD5 3'UTR 0.16 TCGA-EI-6917-01 4 99027209 99027209 C A STPG2 Missense_Mutation p.K169N 0.24 tolerated(0.1) benign(0.245) TCGA-EI-6917-01 4 99313106 99313106 C T RAP1GDS1 Missense_Mutation p.S172L 0.20 tolerated(0.34) benign(0.01) TCGA-EI-6917-01 4 99403302 99403302 A C TSPAN5 Missense_Mutation p.F102V 0.22 deleterious(0) probably_damaging(0.912) TCGA-EI-6917-01 4 994469 994469 G A IDUA Silent p.E123E 0.21 TCGA-EI-6917-01 5 100147602 100147602 T C ST8SIA4 Silent p.L343L 0.21 TCGA-EI-6917-01 5 100231434 100231434 G A ST8SIA4 Nonsense_Mutation p.R57* 0.24 TCGA-EI-6917-01 5 101572687 101572687 C A SLCO4C1 Nonsense_Mutation p.G684* 0.30 TCGA-EI-6917-01 5 101583042 101583042 C T SLCO4C1 Silent p.A575A 0.17 TCGA-EI-6917-01 5 101631871 101631871 G A SLCO4C1 Silent p.V32V 0.22 TCGA-EI-6917-01 5 101709136 101709136 G A SLCO6A1 Missense_Mutation p.R694C 0.17 tolerated(0.14) benign(0.361) TCGA-EI-6917-01 5 102614131 102614131 G T C5orf30 3'UTR 0.26 TCGA-EI-6917-01 5 102890486 102890486 A C NUDT12 Missense_Mutation p.F345V 0.11 tolerated(0.05) benign(0.443) TCGA-EI-6917-01 5 102891757 102891757 C T NUDT12 Missense_Mutation p.R280Q 0.20 deleterious(0.01) probably_damaging(0.979) TCGA-EI-6917-01 5 108219175 108219175 G T FER Missense_Mutation p.E334D 0.35 tolerated(0.14) benign(0.003) TCGA-EI-6917-01 5 108436107 108436107 C T FER Silent p.F645F 0.30 TCGA-EI-6917-01 5 109183457 109183457 G A MAN2A1 Missense_Mutation p.R981Q 0.17 deleterious(0) probably_damaging(0.973) TCGA-EI-6917-01 5 11199716 11199716 C T CTNND2 Missense_Mutation p.E607K 0.36 deleterious(0) probably_damaging(0.945) TCGA-EI-6917-01 5 112090594 112090594 G A APC Missense_Mutation p.A3T 0.22 probably_damaging(0.978) TCGA-EI-6917-01 5 112154724 112154724 G A APC Missense_Mutation p.R332Q 0.29 benign(0.3) TCGA-EI-6917-01 5 112173444 112173444 T G APC Missense_Mutation p.I718S 0.17 probably_damaging(1) TCGA-EI-6917-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.21 TCGA-EI-6917-01 5 112175754 112175754 T G APC Nonsense_Mutation p.L1488* 0.18 TCGA-EI-6917-01 5 112203302 112203302 G A SRP19 3'UTR 0.24 TCGA-EI-6917-01 5 112862360 112862360 G A YTHDC2 Missense_Mutation p.E185K 0.25 tolerated(0.06) benign(0.009) TCGA-EI-6917-01 5 112889319 112889319 G A YTHDC2 Missense_Mutation p.E634K 0.24 deleterious(0.01) probably_damaging(0.973) TCGA-EI-6917-01 5 114607005 114607005 C A CCDC112 Nonsense_Mutation p.E413* 0.25 TCGA-EI-6917-01 5 118469808 118469808 C T DMXL1 Missense_Mutation p.S730F 0.30 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 5 118485319 118485319 T C DMXL1 Missense_Mutation p.I1266T 0.33 tolerated(0.53) benign(0.097) TCGA-EI-6917-01 5 118485540 118485540 C T DMXL1 Missense_Mutation p.R1340W 0.28 deleterious(0) probably_damaging(0.967) TCGA-EI-6917-01 5 118511034 118511034 T C DMXL1 Splice_Site p.X2253_splice 0.31 TCGA-EI-6917-01 5 118513721 118513721 C A DMXL1 Missense_Mutation p.S2306Y 0.27 deleterious(0.01) probably_damaging(0.95) TCGA-EI-6917-01 5 118580198 118580198 C A DMXL1 Missense_Mutation p.S2929Y 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 121411135 121411135 C T LOX Missense_Mutation p.R281Q 0.21 deleterious(0.02) probably_damaging(0.941) TCGA-EI-6917-01 5 121759198 121759198 A G SNCAIP Missense_Mutation p.K256E 0.20 deleterious(0.01) benign(0.219) TCGA-EI-6917-01 5 121759237 121759237 C T SNCAIP Nonsense_Mutation p.R269* 0.13 TCGA-EI-6917-01 5 121787096 121787096 G A SNCAIP Missense_Mutation p.E852K 0.10 deleterious(0.01) possibly_damaging(0.545) TCGA-EI-6917-01 5 126145904 126145904 G A LMNB1 Silent p.T225T 0.19 TCGA-EI-6917-01 5 126161781 126161781 G T LMNB1 Missense_Mutation p.L531F 0.49 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 5 126781225 126781225 C T MEGF10 Silent p.I856I 0.26 TCGA-EI-6917-01 5 126860235 126860235 C A PRRC1 Missense_Mutation p.S39Y 0.24 tolerated_low_confidence(0.4) benign(0.035) TCGA-EI-6917-01 5 127607692 127607692 G A FBN2 Silent p.V2653V 0.30 TCGA-EI-6917-01 5 127647617 127647617 A G FBN2 Silent p.G1636G 0.19 TCGA-EI-6917-01 5 127671703 127671703 G A FBN2 Missense_Mutation p.T1234M 0.23 deleterious(0.01) probably_damaging(0.967) TCGA-EI-6917-01 5 128326134 128326134 C T SLC27A6 Missense_Mutation p.R316C 0.28 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 5 128864279 128864279 G T ADAMTS19 Nonsense_Mutation p.E407* 0.22 TCGA-EI-6917-01 5 129521334 129521334 C T CHSY3 Silent p.F833F 0.20 TCGA-EI-6917-01 5 131013366 131013366 A G FNIP1 Intron 0.31 TCGA-EI-6917-01 5 131326641 131326641 C T ACSL6 Missense_Mutation p.R97Q 0.27 tolerated(0.11) probably_damaging(0.999) TCGA-EI-6917-01 5 131728297 131728297 C T SLC22A5 Silent p.F480F 0.18 TCGA-EI-6917-01 5 131811505 131811505 G A AC116366.6 5'Flank 0.24 TCGA-EI-6917-01 5 131923330 131923330 G A RAD50 Missense_Mutation p.R278Q 0.26 tolerated(0.14) benign(0.028) TCGA-EI-6917-01 5 131945022 131945022 C T RAD50 Silent p.C990C 0.28 TCGA-EI-6917-01 5 131953875 131953875 G A RAD50 Missense_Mutation p.R1093Q 0.22 tolerated(0.14) benign(0.004) TCGA-EI-6917-01 5 132098289 132098289 C T SEPT8 Missense_Mutation p.E195K 0.25 deleterious(0.01) probably_damaging(0.96) TCGA-EI-6917-01 5 132216807 132216807 G A AFF4 Missense_Mutation p.R1146C 0.21 deleterious(0) possibly_damaging(0.88) TCGA-EI-6917-01 5 132216874 132216874 G T AFF4 Missense_Mutation p.F1123L 0.25 deleterious(0) benign(0.005) TCGA-EI-6917-01 5 132426954 132426954 G A HSPA4 Missense_Mutation p.R483Q 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 133482331 133482331 G T TCF7 3'UTR 0.33 TCGA-EI-6917-01 5 134011720 134011720 C T SEC24A Nonsense_Mutation p.R387* 0.24 TCGA-EI-6917-01 5 134018156 134018156 C T SEC24A Missense_Mutation p.A492V 0.24 deleterious(0) probably_damaging(0.964) TCGA-EI-6917-01 5 134041062 134041062 C T SEC24A Missense_Mutation p.S829L 0.29 deleterious(0.01) benign(0.047) TCGA-EI-6917-01 5 134113410 134113410 G T DDX46 Nonsense_Mutation p.E254* 0.36 TCGA-EI-6917-01 5 135587465 135587465 G A TRPC7 Missense_Mutation p.A484V 0.10 tolerated(0.06) benign(0.182) TCGA-EI-6917-01 5 135587488 135587488 G A TRPC7 Silent p.F476F 0.26 TCGA-EI-6917-01 5 136314358 136314358 G A SPOCK1 Silent p.V435V 0.32 TCGA-EI-6917-01 5 136961498 136961498 A G KLHL3 Missense_Mutation p.V560A 0.18 tolerated(0.72) benign(0.002) TCGA-EI-6917-01 5 13717498 13717498 C T DNAH5 Missense_Mutation p.E4211K 0.10 possibly_damaging(0.635) TCGA-EI-6917-01 5 137235267 137235267 G A PKD2L2 Missense_Mutation p.R196Q 0.25 tolerated(0.09) benign(0.009) TCGA-EI-6917-01 5 137261613 137261613 G A PKD2L2 Missense_Mutation p.E556K 0.18 tolerated(0.15) benign(0.041) TCGA-EI-6917-01 5 137320955 137320955 T G FAM13B Missense_Mutation p.E390D 0.22 tolerated(0.09) possibly_damaging(0.867) TCGA-EI-6917-01 5 137504340 137504340 G A BRD8 Intron 0.20 TCGA-EI-6917-01 5 137622239 137622239 C A CDC25C Missense_Mutation p.K369N 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 137727927 137727927 G A KDM3B Missense_Mutation p.R869Q 0.27 tolerated(0.09) probably_damaging(0.996) TCGA-EI-6917-01 5 138210109 138210109 G A LRRTM2 Silent p.C47C 0.21 TCGA-EI-6917-01 5 138269676 138269676 G T CTNNA1 Missense_Mutation p.E873D 0.25 tolerated(0.06) possibly_damaging(0.889) TCGA-EI-6917-01 5 13885136 13885136 C T DNAH5 Missense_Mutation p.R982H 0.29 possibly_damaging(0.522) TCGA-EI-6917-01 5 13885242 13885242 C A DNAH5 Nonsense_Mutation p.E947* 0.24 TCGA-EI-6917-01 5 139219614 139219614 G T PSD2 Missense_Mutation p.E657D 0.27 tolerated(0.09) benign(0.212) TCGA-EI-6917-01 5 13928280 13928280 C A DNAH5 Missense_Mutation p.R67I 0.22 benign(0.308) TCGA-EI-6917-01 5 139740898 139740898 C A SLC4A9 Missense_Mutation p.L175M 0.34 deleterious(0.03) probably_damaging(1) TCGA-EI-6917-01 5 139876445 139876445 T C ANKHD1 Silent p.G862G 0.12 TCGA-EI-6917-01 5 139892978 139892978 G A ANKHD1 Missense_Mutation p.E1411K 0.21 benign(0.305) TCGA-EI-6917-01 5 140166434 140166434 G A PCDHA1 Missense_Mutation p.E187K 0.30 tolerated_low_confidence(0.18) benign(0.011) TCGA-EI-6917-01 5 140167390 140167390 G A PCDHA1 Silent p.S505S 0.18 TCGA-EI-6917-01 5 140174979 140174979 G A PCDHA2 Missense_Mutation p.E144K 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.79) TCGA-EI-6917-01 5 140175468 140175468 A C PCDHA2 Missense_Mutation p.K307Q 0.37 tolerated_low_confidence(0.43) benign(0.005) TCGA-EI-6917-01 5 140175888 140175888 G A PCDHA2 Missense_Mutation p.D447N 0.25 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-EI-6917-01 5 140181333 140181333 G T PCDHA3 Missense_Mutation p.R184I 0.21 tolerated_low_confidence(0.08) benign(0.028) TCGA-EI-6917-01 5 140187737 140187737 G A PCDHA4 Missense_Mutation p.G322D 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.868) TCGA-EI-6917-01 5 140188221 140188221 C T PCDHA4 Silent p.D483D 0.32 TCGA-EI-6917-01 5 140208433 140208433 G A PCDHA6 Missense_Mutation p.E253K 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EI-6917-01 5 140228014 140228014 G A PCDHA9 5'UTR 0.29 TCGA-EI-6917-01 5 140229206 140229206 G A PCDHA9 Missense_Mutation p.D376N 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.858) TCGA-EI-6917-01 5 140229428 140229428 G A PCDHA9 Missense_Mutation p.D450N 0.29 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-EI-6917-01 5 140249307 140249307 G A PCDHA11 Missense_Mutation p.E207K 0.26 tolerated_low_confidence(0.06) benign(0.301) TCGA-EI-6917-01 5 140256432 140256432 G A PCDHA12 Missense_Mutation p.E459K 0.28 deleterious_low_confidence(0.05) benign(0.245) TCGA-EI-6917-01 5 140263645 140263645 G A PCDHA13 Missense_Mutation p.D598N 0.15 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EI-6917-01 5 140306662 140306662 G A PCDHAC1 Missense_Mutation p.R62H 0.26 tolerated(0.1) benign(0.043) TCGA-EI-6917-01 5 140306664 140306664 G A PCDHAC1 Missense_Mutation p.E63K 0.26 tolerated(1) benign(0.039) TCGA-EI-6917-01 5 140307057 140307057 G A PCDHAC1 Missense_Mutation p.E194K 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 140307515 140307515 G A PCDHAC1 Silent p.S346S 0.25 TCGA-EI-6917-01 5 140308342 140308342 G A PCDHAC1 Missense_Mutation p.R622H 0.16 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 5 140347937 140347937 G A PCDHAC2 Missense_Mutation p.G529D 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 140474789 140474789 G A PCDHB2 Missense_Mutation p.E139K 0.19 tolerated_low_confidence(0.06) benign(0.063) TCGA-EI-6917-01 5 140481456 140481456 C T PCDHB3 Missense_Mutation p.A408V 0.16 deleterious_low_confidence(0.03) benign(0.05) TCGA-EI-6917-01 5 140481581 140481581 G A PCDHB3 Missense_Mutation p.A450T 0.22 tolerated_low_confidence(0.38) benign(0.001) TCGA-EI-6917-01 5 140502379 140502379 G T PCDHB4 Missense_Mutation p.D267Y 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 140502399 140502399 C T PCDHB4 Silent p.F273F 0.21 TCGA-EI-6917-01 5 140529924 140529924 C T PCDHB6 Missense_Mutation p.S29L 0.28 tolerated(0.59) benign(0.018) TCGA-EI-6917-01 5 140536777 140536777 T G PCDHB17 Missense_Mutation p.F401V 0.24 deleterious_low_confidence(0) possibly_damaging(0.733) TCGA-EI-6917-01 5 140553276 140553276 G T PCDHB7 Missense_Mutation p.R287I 0.21 deleterious_low_confidence(0.01) benign(0.003) TCGA-EI-6917-01 5 140554607 140554607 C T PCDHB7 Missense_Mutation p.P731S 0.11 tolerated_low_confidence(0.06) benign(0.32) TCGA-EI-6917-01 5 140554818 140554818 C T PCDHB7 3'UTR 0.11 TCGA-EI-6917-01 5 140555086 140555086 T C PCDHB7 3'UTR 0.09 TCGA-EI-6917-01 5 140555904 140555904 G T PCDHB7 3'UTR 0.07 TCGA-EI-6917-01 5 140558172 140558172 G A PCDHB8 Missense_Mutation p.R186H 0.10 tolerated_low_confidence(0.25) benign(0.003) TCGA-EI-6917-01 5 140558575 140558575 C T PCDHB8 Silent p.I320I 0.12 TCGA-EI-6917-01 5 140572990 140572990 C T PCDHB10 Nonsense_Mutation p.R289* 0.31 TCGA-EI-6917-01 5 140573706 140573706 C T PCDHB10 Silent p.F527F 0.12 TCGA-EI-6917-01 5 140574484 140574484 G T PCDHB10 Nonsense_Mutation p.E787* 0.20 TCGA-EI-6917-01 5 140581715 140581715 C T PCDHB11 Nonsense_Mutation p.R790* 0.19 TCGA-EI-6917-01 5 140590894 140590894 T G PCDHB12 3'UTR 0.27 TCGA-EI-6917-01 5 140590924 140590924 C T PCDHB12 3'UTR 0.31 TCGA-EI-6917-01 5 140594136 140594136 T C PCDHB13 Silent p.S147S 0.25 TCGA-EI-6917-01 5 140594233 140594233 C T PCDHB13 Missense_Mutation p.R180W 0.26 deleterious_low_confidence(0) possibly_damaging(0.552) TCGA-EI-6917-01 5 140595857 140595857 C T PCDHB13 Missense_Mutation p.S721L 0.36 tolerated_low_confidence(0.05) benign(0.043) TCGA-EI-6917-01 5 140603563 140603563 C T PCDHB14 Silent p.V162V 0.28 TCGA-EI-6917-01 5 140604658 140604658 C T PCDHB14 Silent p.F527F 0.26 TCGA-EI-6917-01 5 140711920 140711920 G A PCDHGA1 Missense_Mutation p.D557N 0.17 deleterious_low_confidence(0.01) probably_damaging(0.935) TCGA-EI-6917-01 5 140720665 140720665 C T PCDHGA2 Silent p.I709I 0.14 TCGA-EI-6917-01 5 140723672 140723672 C T PCDHGA3 Silent p.C24C 0.33 TCGA-EI-6917-01 5 140735321 140735321 G T PCDHGA4 Missense_Mutation p.G185V 0.21 tolerated_low_confidence(0.1) possibly_damaging(0.461) TCGA-EI-6917-01 5 140750458 140750458 C T PCDHGB3 Missense_Mutation p.S166L 0.21 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 5 140754586 140754586 G A PCDHGA6 Silent p.S312S 0.25 TCGA-EI-6917-01 5 140762958 140762958 G A PCDHGA7 Silent p.T164T 0.29 TCGA-EI-6917-01 5 140772762 140772762 G T PCDHGA8 Missense_Mutation p.D128Y 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EI-6917-01 5 140773556 140773556 T A PCDHGA8 Missense_Mutation p.F392L 0.28 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-EI-6917-01 5 140773940 140773940 C T PCDHGA8 Silent p.F520F 0.25 TCGA-EI-6917-01 5 140782744 140782744 C T PCDHGA9 Silent p.F75F 0.23 TCGA-EI-6917-01 5 140782954 140782954 C T PCDHGA9 Silent p.I145I 0.21 TCGA-EI-6917-01 5 140789345 140789345 C T PCDHGB6 Missense_Mutation p.R526C 0.31 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 5 140789904 140789904 C T PCDHGB6 Missense_Mutation p.A712V 0.22 tolerated(0.14) benign(0.285) TCGA-EI-6917-01 5 140795045 140795045 G A PCDHGA10 Missense_Mutation p.R768Q 0.32 tolerated_low_confidence(0.08) benign(0.043) TCGA-EI-6917-01 5 140799843 140799843 T C PCDHGB7 Splice_Site p.X805_splice 0.24 TCGA-EI-6917-01 5 140801462 140801462 G A PCDHGA11 Missense_Mutation p.R223Q 0.21 deleterious_low_confidence(0.04) benign(0.234) TCGA-EI-6917-01 5 140802648 140802648 C T PCDHGA11 Silent p.F618F 0.23 TCGA-EI-6917-01 5 140907242 140907242 C A DIAPH1 Missense_Mutation p.K1057N 0.19 probably_damaging(0.991) TCGA-EI-6917-01 5 140913969 140913969 C A DIAPH1 Missense_Mutation p.K838N 0.19 possibly_damaging(0.573) TCGA-EI-6917-01 5 141051804 141051804 C T ARAP3 Missense_Mutation p.E484K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-EI-6917-01 5 142283115 142283115 G A ARHGAP26 Missense_Mutation p.R238H 0.36 tolerated(0.36) possibly_damaging(0.522) TCGA-EI-6917-01 5 142689695 142689695 G A NR3C1 Nonsense_Mutation p.R480* 0.19 TCGA-EI-6917-01 5 142779341 142779341 G T NR3C1 Missense_Mutation p.P355Q 0.09 deleterious(0) probably_damaging(0.962) TCGA-EI-6917-01 5 142780254 142780254 C T NR3C1 Missense_Mutation p.A51T 0.23 tolerated_low_confidence(0.14) benign(0.02) TCGA-EI-6917-01 5 14363897 14363897 C T TRIO Silent p.F816F 0.27 TCGA-EI-6917-01 5 145608584 145608584 G T RBM27 Nonsense_Mutation p.E127* 0.23 TCGA-EI-6917-01 5 145665637 145665637 G T RBM27 3'UTR 0.29 TCGA-EI-6917-01 5 145719222 145719222 G A POU4F3 Missense_Mutation p.A78T 0.19 tolerated(0.17) benign(0.019) TCGA-EI-6917-01 5 145719982 145719982 G A POU4F3 Missense_Mutation p.R331Q 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 145862162 145862162 G A TCERG1 Missense_Mutation p.D632N 0.28 deleterious(0.02) unknown(0) TCGA-EI-6917-01 5 14609106 14609106 G A FAM105A Missense_Mutation p.D293N 0.11 tolerated(0.25) probably_damaging(0.999) TCGA-EI-6917-01 5 14673797 14673797 G T FAM105B Nonsense_Mutation p.E67* 0.22 TCGA-EI-6917-01 5 147027986 147027986 T G JAKMIP2 Missense_Mutation p.K297Q 0.24 deleterious(0) benign(0.22) TCGA-EI-6917-01 5 147480938 147480938 A C SPINK5 Missense_Mutation p.K414T 0.21 deleterious(0.03) probably_damaging(0.976) TCGA-EI-6917-01 5 147665727 147665727 G A SPINK13 3'UTR 0.37 TCGA-EI-6917-01 5 147781989 147781989 C T FBXO38 Missense_Mutation p.R169C 0.20 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 5 147790235 147790235 G A FBXO38 Missense_Mutation p.D334N 0.24 tolerated(0.1) probably_damaging(0.991) TCGA-EI-6917-01 5 148687128 148687128 C T AFAP1L1 Silent p.F233F 0.19 TCGA-EI-6917-01 5 148876287 148876287 C A CSNK1A1 3'Flank 0.23 TCGA-EI-6917-01 5 149360294 149360294 C T SLC26A2 Missense_Mutation p.P380S 0.29 tolerated(0.33) benign(0.119) TCGA-EI-6917-01 5 149374260 149374260 A G TIGD6 3'UTR 0.28 TCGA-EI-6917-01 5 149500480 149500480 G A PDGFRB Missense_Mutation p.R853W 0.17 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 5 149900988 149900988 G T NDST1 Missense_Mutation p.D58Y 0.27 deleterious_low_confidence(0.01) benign(0.225) TCGA-EI-6917-01 5 150275935 150275935 C A ZNF300 Missense_Mutation p.R305I 0.31 deleterious(0.02) probably_damaging(0.944) TCGA-EI-6917-01 5 150563016 150563016 G T CCDC69 Silent p.V291V 0.25 TCGA-EI-6917-01 5 150646928 150646928 G A GM2A Silent p.G166G 0.21 TCGA-EI-6917-01 5 150657218 150657218 G T SLC36A3 Silent p.V424V 0.30 TCGA-EI-6917-01 5 150660702 150660702 G A SLC36A3 Silent p.F380F 0.19 TCGA-EI-6917-01 5 150911342 150911342 A G FAT2 Missense_Mutation p.V3206A 0.41 possibly_damaging(0.787) TCGA-EI-6917-01 5 150923378 150923378 G A FAT2 Missense_Mutation p.S2437F 0.20 probably_damaging(1) TCGA-EI-6917-01 5 150947261 150947261 C T FAT2 Missense_Mutation p.R411Q 0.34 benign(0.012) TCGA-EI-6917-01 5 151051214 151051214 C T SPARC Missense_Mutation p.E84K 0.24 tolerated(0.64) probably_damaging(0.998) TCGA-EI-6917-01 5 151179526 151179526 G A G3BP1 Missense_Mutation p.R307Q 0.19 tolerated(0.21) benign(0) TCGA-EI-6917-01 5 151202391 151202391 G A GLRA1 Missense_Mutation p.S406F 0.23 deleterious(0.05) benign(0.009) TCGA-EI-6917-01 5 153026599 153026599 C T GRIA1 Missense_Mutation p.P121L 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-EI-6917-01 5 153372611 153372611 C A FAM114A2 Missense_Mutation p.E481D 0.27 deleterious(0.01) benign(0.297) TCGA-EI-6917-01 5 153406010 153406010 C A FAM114A2 Nonsense_Mutation p.E288* 0.38 TCGA-EI-6917-01 5 154202068 154202068 G A FAXDC2 Silent p.G214G 0.30 TCGA-EI-6917-01 5 154250249 154250249 G T CNOT8 Missense_Mutation p.D114Y 0.22 deleterious(0) probably_damaging(0.951) TCGA-EI-6917-01 5 154396171 154396171 G A KIF4B Missense_Mutation p.A918T 0.22 tolerated(0.44) benign(0.044) TCGA-EI-6917-01 5 156349138 156349138 G A TIMD4 Silent p.F328F 0.12 TCGA-EI-6917-01 5 156589801 156589801 C T FAM71B Missense_Mutation p.R492Q 0.19 tolerated(0.29) benign(0.123) TCGA-EI-6917-01 5 156667075 156667075 G T ITK Missense_Mutation p.E285D 0.21 tolerated(0.71) benign(0.012) TCGA-EI-6917-01 5 156819859 156819859 G A CYFIP2 Missense_Mutation p.D1179N 0.28 deleterious(0.04) benign(0.108) TCGA-EI-6917-01 5 157243785 157243785 C T CLINT1 Missense_Mutation p.R67Q 0.18 deleterious(0.02) benign(0.176) TCGA-EI-6917-01 5 158140131 158140131 C T EBF1 Missense_Mutation p.D406N 0.13 deleterious_low_confidence(0.03) benign(0.105) TCGA-EI-6917-01 5 158223377 158223377 G A EBF1 Silent p.F295F 0.17 TCGA-EI-6917-01 5 158526513 158526513 C A EBF1 5'UTR 0.17 TCGA-EI-6917-01 5 159399013 159399013 C T ADRA1B Silent p.F359F 0.28 TCGA-EI-6917-01 5 159519746 159519746 G T PWWP2A Silent p.V637V 0.18 TCGA-EI-6917-01 5 159831502 159831502 C T SLU7 Missense_Mutation p.R509Q 0.23 tolerated(0.4) benign(0.015) TCGA-EI-6917-01 5 161119070 161119070 C T GABRA6 Missense_Mutation p.A317V 0.20 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 5 161576165 161576165 C T GABRG2 Missense_Mutation p.S365L 0.23 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 5 161939 161939 G A PLEKHG4B Silent p.P487P 0.31 TCGA-EI-6917-01 5 162945299 162945299 G A MAT2B Missense_Mutation p.R312Q 0.28 tolerated(0.21) benign(0.056) TCGA-EI-6917-01 5 163445 163445 C T PLEKHG4B Silent p.F730F 0.24 TCGA-EI-6917-01 5 16762654 16762654 C T MYO10 Silent p.A529A 0.20 TCGA-EI-6917-01 5 167674406 167674406 C T TENM2 Silent p.F2154F 0.17 TCGA-EI-6917-01 5 168137976 168137976 G A SLIT3 Silent p.I881I 0.26 TCGA-EI-6917-01 5 169446068 169446068 G A DOCK2 Missense_Mutation p.D1113N 0.35 deleterious(0.05) possibly_damaging(0.699) TCGA-EI-6917-01 5 169474531 169474531 C A DOCK2 Missense_Mutation p.F1328L 0.34 tolerated(0.18) benign(0.234) TCGA-EI-6917-01 5 169535101 169535101 A G FOXI1 Missense_Mutation p.D208G 0.31 deleterious(0) possibly_damaging(0.676) TCGA-EI-6917-01 5 171638918 171638918 G A UBTD2 Silent p.F207F 0.29 TCGA-EI-6917-01 5 171774305 171774305 A G SH3PXD2B Silent p.P348P 0.14 TCGA-EI-6917-01 5 171789795 171789795 G A SH3PXD2B Missense_Mutation p.S169L 0.12 deleterious(0) possibly_damaging(0.903) TCGA-EI-6917-01 5 173059 173059 C T PLEKHG4B Silent p.I1010I 0.21 TCGA-EI-6917-01 5 174869992 174869992 C T DRD1 Silent p.T37T 0.32 TCGA-EI-6917-01 5 175111286 175111286 C A HRH2 Silent p.V350V 0.36 TCGA-EI-6917-01 5 175740252 175740252 C A SIMC1 Intron 0.32 TCGA-EI-6917-01 5 176073012 176073012 G A EIF4E1B 3'UTR 0.22 TCGA-EI-6917-01 5 176308772 176308772 C T HK3 Missense_Mutation p.V772I 0.35 tolerated(0.2) benign(0.019) TCGA-EI-6917-01 5 176687042 176687042 T G NSD1 Missense_Mutation p.F1673L 0.41 tolerated(0.13) benign(0.076) TCGA-EI-6917-01 5 176910961 176910961 C T PDLIM7 Silent p.T398T 0.23 TCGA-EI-6917-01 5 176941705 176941705 C T DDX41 Missense_Mutation p.R311Q 0.29 tolerated(0.28) benign(0.059) TCGA-EI-6917-01 5 178045718 178045718 C T CLK4 Missense_Mutation p.E75K 0.26 tolerated(0.11) probably_damaging(0.994) TCGA-EI-6917-01 5 178392532 178392532 G T ZNF454 Missense_Mutation p.R376I 0.26 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 5 178459351 178459351 G T ZNF879 Missense_Mutation p.K134N 0.21 tolerated(0.2) benign(0.069) TCGA-EI-6917-01 5 178460039 178460039 C T ZNF879 Nonsense_Mutation p.R364* 0.28 TCGA-EI-6917-01 5 178460544 178460544 G T ZNF879 Missense_Mutation p.R532I 0.31 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 178504125 178504125 C T ZNF354C Missense_Mutation p.P70S 0.10 deleterious(0.05) probably_damaging(0.996) TCGA-EI-6917-01 5 178506240 178506240 G T ZNF354C Missense_Mutation p.E269D 0.21 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 5 178540880 178540880 G A ADAMTS2 Silent p.L1208L 0.26 TCGA-EI-6917-01 5 178553008 178553008 G A ADAMTS2 Missense_Mutation p.S914F 0.31 deleterious(0.01) possibly_damaging(0.62) TCGA-EI-6917-01 5 179045265 179045265 C T HNRNPH1 Missense_Mutation p.R199Q 0.25 tolerated(0.2) benign(0.004) TCGA-EI-6917-01 5 179070463 179070463 C A C5orf60 Missense_Mutation p.E103D 0.14 deleterious(0) possibly_damaging(0.801) TCGA-EI-6917-01 5 179264406 179264406 G A C5orf45 Silent p.F339F 0.30 TCGA-EI-6917-01 5 179751818 179751818 G A GFPT2 Missense_Mutation p.T225M 0.47 tolerated(0.06) benign(0.048) TCGA-EI-6917-01 5 179757787 179757787 G A GFPT2 Silent p.I149I 0.24 TCGA-EI-6917-01 5 180041137 180041137 C T FLT4 Missense_Mutation p.D1088N 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 180047687 180047687 G A FLT4 Silent p.I776I 0.29 TCGA-EI-6917-01 5 180056269 180056269 G T FLT4 Silent p.V325V 0.23 TCGA-EI-6917-01 5 1878854 1878854 G A IRX4 Silent p.F263F 0.34 TCGA-EI-6917-01 5 22078743 22078743 A G CDH12 Missense_Mutation p.F15L 0.33 tolerated(0.81) benign(0) TCGA-EI-6917-01 5 22142614 22142614 G A CDH12 Intron 0.15 TCGA-EI-6917-01 5 23509171 23509171 G A PRDM9 Missense_Mutation p.S10N 0.19 tolerated_low_confidence(0.06) unknown(0) TCGA-EI-6917-01 5 23524491 23524491 C T PRDM9 Silent p.F333F 0.22 TCGA-EI-6917-01 5 24488074 24488074 C T CDH10 Missense_Mutation p.D689N 0.31 tolerated(0.1) probably_damaging(0.989) TCGA-EI-6917-01 5 2752557 2752557 G A C5orf38 Missense_Mutation p.R60Q 0.17 deleterious_low_confidence(0) benign(0.417) TCGA-EI-6917-01 5 31538549 31538549 C T C5orf22 Missense_Mutation p.S187L 0.25 tolerated(0.23) benign(0.005) TCGA-EI-6917-01 5 32126688 32126688 C T GOLPH3 Missense_Mutation p.R176Q 0.27 deleterious(0) possibly_damaging(0.765) TCGA-EI-6917-01 5 32242209 32242209 C A MTMR12 Missense_Mutation p.E375D 0.18 tolerated(0.08) benign(0.225) TCGA-EI-6917-01 5 32712326 32712326 G A NPR3 Silent p.S148S 0.31 TCGA-EI-6917-01 5 32789659 32789659 G T AC026703.1 Missense_Mutation p.R51I 0.08 possibly_damaging(0.506) TCGA-EI-6917-01 5 32789873 32789873 G T AC026703.1 Nonstop_Mutation p.*122Yext*5 0.17 TCGA-EI-6917-01 5 33577232 33577232 G A ADAMTS12 Missense_Mutation p.R967C 0.19 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 5 34807923 34807923 A G RAI14 Missense_Mutation p.S117G 0.27 tolerated(0.28) benign(0.001) TCGA-EI-6917-01 5 34913634 34913634 C T RAD1 Missense_Mutation p.R83Q 0.20 tolerated(0.38) benign(0.044) TCGA-EI-6917-01 5 34913635 34913635 G A RAD1 Nonsense_Mutation p.R83* 0.27 TCGA-EI-6917-01 5 35039450 35039450 A G AGXT2 Missense_Mutation p.V114A 0.21 deleterious(0) probably_damaging(0.936) TCGA-EI-6917-01 5 35740067 35740067 C T SPEF2 Missense_Mutation p.S1037F 0.24 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 5 35759761 35759761 G T SPEF2 Missense_Mutation p.R1187I 0.18 deleterious(0.05) benign(0.186) TCGA-EI-6917-01 5 35800235 35800235 C T SPEF2 Missense_Mutation p.P1666S 0.24 tolerated(0.41) benign(0.001) TCGA-EI-6917-01 5 35871223 35871223 A G IL7R Missense_Mutation p.T149A 0.29 tolerated(0.17) probably_damaging(0.986) TCGA-EI-6917-01 5 3599596 3599596 C T IRX1 Silent p.F178F 0.25 TCGA-EI-6917-01 5 3599746 3599746 C T IRX1 Silent p.I228I 0.25 TCGA-EI-6917-01 5 36035583 36035583 C T UGT3A2 3'UTR 0.38 TCGA-EI-6917-01 5 36124361 36124361 G A LMBRD2 Missense_Mutation p.R252C 0.36 deleterious(0.01) possibly_damaging(0.79) TCGA-EI-6917-01 5 36207366 36207366 C T NADK2 Missense_Mutation p.A288T 0.23 tolerated(0.08) probably_damaging(0.948) TCGA-EI-6917-01 5 36257107 36257107 C T RANBP3L Missense_Mutation p.R305Q 0.34 tolerated(0.77) benign(0.001) TCGA-EI-6917-01 5 36686427 36686427 C A SLC1A3 3'UTR 0.27 TCGA-EI-6917-01 5 37022389 37022389 C T NIPBL Missense_Mutation p.S1824L 0.17 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 5 37024792 37024792 C T NIPBL Missense_Mutation p.R1894C 0.21 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 5 37107643 37107643 C A C5orf42 3'UTR 0.17 TCGA-EI-6917-01 5 37164388 37164388 G A C5orf42 Silent p.F2525F 0.22 TCGA-EI-6917-01 5 37182909 37182909 C T C5orf42 Missense_Mutation p.E1792K 0.27 tolerated(0.07) benign(0.191) TCGA-EI-6917-01 5 37196023 37196023 C T C5orf42 Missense_Mutation p.A1250T 0.20 tolerated(0.05) benign(0.014) TCGA-EI-6917-01 5 37307478 37307478 G A NUP155 Missense_Mutation p.P942S 0.26 deleterious(0.01) probably_damaging(0.978) TCGA-EI-6917-01 5 38258854 38258854 G A EGFLAM 5'UTR 0.14 TCGA-EI-6917-01 5 38481795 38481795 G A LIFR Nonsense_Mutation p.R1066* 0.24 TCGA-EI-6917-01 5 38484883 38484883 C T LIFR Missense_Mutation p.R862Q 0.29 tolerated(0.08) probably_damaging(0.991) TCGA-EI-6917-01 5 39202037 39202037 C T FYB Silent p.P352P 0.26 TCGA-EI-6917-01 5 39203033 39203033 C T FYB Silent p.P20P 0.34 TCGA-EI-6917-01 5 39285149 39285149 T A C9 3'UTR 0.24 TCGA-EI-6917-01 5 39288895 39288895 C T C9 Silent p.K525K 0.28 TCGA-EI-6917-01 5 39316123 39316123 G A C9 Silent p.G208G 0.23 TCGA-EI-6917-01 5 40936571 40936571 G T C7 Nonsense_Mutation p.E138* 0.24 TCGA-EI-6917-01 5 40981528 40981528 G A C7 Silent p.S795S 0.28 TCGA-EI-6917-01 5 41161920 41161920 G A C6 Nonsense_Mutation p.R445* 0.22 TCGA-EI-6917-01 5 41807480 41807480 A C OXCT1 Missense_Mutation p.Y265D 0.21 deleterious(0) possibly_damaging(0.741) TCGA-EI-6917-01 5 42719172 42719172 C A GHR Silent p.V521V 0.19 TCGA-EI-6917-01 5 427924 427924 G A AHRR Silent p.T259T 0.32 TCGA-EI-6917-01 5 43246106 43246106 C T NIM1K Nonsense_Mutation p.R77* 0.23 TCGA-EI-6917-01 5 43277227 43277227 G T NIM1K Nonsense_Mutation p.E121* 0.32 TCGA-EI-6917-01 5 44388517 44388517 G T FGF10 Missense_Mutation p.L90I 0.18 deleterious(0.03) probably_damaging(0.911) TCGA-EI-6917-01 5 5182170 5182170 G A ADAMTS16 Missense_Mutation p.R172Q 0.32 deleterious(0) possibly_damaging(0.906) TCGA-EI-6917-01 5 5182364 5182364 G A ADAMTS16 Missense_Mutation p.D237N 0.20 tolerated(0.33) benign(0.001) TCGA-EI-6917-01 5 5191833 5191833 C T ADAMTS16 Missense_Mutation p.R415C 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 53814717 53814717 G A SNX18 Missense_Mutation p.R312H 0.19 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 5 53839149 53839149 C T SNX18 Nonsense_Mutation p.R588* 0.23 TCGA-EI-6917-01 5 54405923 54405923 C T GZMA Silent p.C234C 0.22 TCGA-EI-6917-01 5 54436179 54436179 T G CDC20B Missense_Mutation p.K181N 0.30 tolerated(0.23) benign(0.004) TCGA-EI-6917-01 5 54572998 54572998 T G DHX29 Missense_Mutation p.K741T 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-EI-6917-01 5 54640354 54640354 G C SKIV2L2 Missense_Mutation p.C304S 0.27 deleterious(0) probably_damaging(0.935) TCGA-EI-6917-01 5 5464629 5464629 C T KIAA0947 Missense_Mutation p.P1728S 0.14 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 54771186 54771186 C A PPAP2A Intron 0.36 TCGA-EI-6917-01 5 55081156 55081156 A C DDX4 Silent p.I219I 0.21 TCGA-EI-6917-01 5 56181765 56181765 C T MAP3K1 Missense_Mutation p.S1330L 0.25 deleterious(0) probably_damaging(0.934) TCGA-EI-6917-01 5 61668324 61668324 G A KIF2A Missense_Mutation p.R569H 0.12 tolerated(0.05) benign(0.385) TCGA-EI-6917-01 5 61786025 61786025 G T IPO11 Nonsense_Mutation p.E521* 0.26 TCGA-EI-6917-01 5 64766712 64766712 C A ADAMTS6 Missense_Mutation p.D119Y 0.15 deleterious(0.01) possibly_damaging(0.823) TCGA-EI-6917-01 5 64886077 64886077 C T TRIM23 3'UTR 0.23 TCGA-EI-6917-01 5 64960592 64960592 G A TRAPPC13 3'Flank 0.33 TCGA-EI-6917-01 5 65465990 65465990 G A SREK1 Silent p.S371S 0.19 TCGA-EI-6917-01 5 65466657 65466657 G T SREK1 Nonsense_Mutation p.E456* 0.26 TCGA-EI-6917-01 5 6620375 6620375 C T NSUN2 Missense_Mutation p.R220H 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 66405977 66405977 C T MAST4 Nonsense_Mutation p.R470* 0.29 TCGA-EI-6917-01 5 66460739 66460739 G T MAST4 Missense_Mutation p.G1911V 0.19 benign(0.001) TCGA-EI-6917-01 5 66479379 66479379 C T CD180 Missense_Mutation p.R431H 0.25 tolerated(0.32) benign(0) TCGA-EI-6917-01 5 67575550 67575550 C A PIK3R1 Missense_Mutation p.S208Y 0.34 tolerated(1) benign(0.007) TCGA-EI-6917-01 5 67588951 67588951 C T PIK3R1 Nonsense_Mutation p.R348* 0.23 TCGA-EI-6917-01 5 68715720 68715720 C T MARVELD2 Nonsense_Mutation p.R170* 0.54 TCGA-EI-6917-01 5 68843869 68843869 G T OCLN Nonsense_Mutation p.E456* 0.13 TCGA-EI-6917-01 5 70952669 70952669 C T MCCC2 Silent p.F558F 0.27 TCGA-EI-6917-01 5 71490896 71490896 A G MAP1B Missense_Mutation p.N572D 0.30 unknown(0) TCGA-EI-6917-01 5 71491772 71491772 G A MAP1B Missense_Mutation p.E864K 0.24 benign(0.41) TCGA-EI-6917-01 5 71495763 71495763 C T MAP1B Missense_Mutation p.T2194M 0.23 probably_damaging(0.971) TCGA-EI-6917-01 5 71756943 71756943 C T ZNF366 Silent p.Q127Q 0.29 TCGA-EI-6917-01 5 71757264 71757264 C A ZNF366 Missense_Mutation p.K20N 0.11 deleterious_low_confidence(0.02) benign(0.162) TCGA-EI-6917-01 5 72383525 72383525 C T FCHO2 Silent p.F785F 0.28 TCGA-EI-6917-01 5 72873711 72873711 A C UTP15 Missense_Mutation p.T309P 0.19 deleterious(0.01) probably_damaging(0.987) TCGA-EI-6917-01 5 73197035 73197035 A G ARHGEF28 Missense_Mutation p.R1334G 0.31 tolerated(0.14) benign(0.022) TCGA-EI-6917-01 5 74639763 74639763 G A HMGCR Missense_Mutation p.R84H 0.24 tolerated(0.39) benign(0.094) TCGA-EI-6917-01 5 74698878 74698878 G A COL4A3BP Silent p.G440G 0.25 TCGA-EI-6917-01 5 74721230 74721230 G A COL4A3BP Missense_Mutation p.A312V 0.24 tolerated(0.11) benign(0.029) TCGA-EI-6917-01 5 74801860 74801860 C A COL4A3BP Nonsense_Mutation p.E188* 0.22 TCGA-EI-6917-01 5 75597229 75597229 C T SV2C Missense_Mutation p.S620L 0.16 deleterious(0) possibly_damaging(0.834) TCGA-EI-6917-01 5 75597257 75597257 C T SV2C Silent p.F629F 0.20 TCGA-EI-6917-01 5 75886384 75886384 G T IQGAP2 Missense_Mutation p.K264N 0.19 tolerated(0.38) benign(0.131) TCGA-EI-6917-01 5 75932998 75932998 C T IQGAP2 Silent p.I640I 0.22 TCGA-EI-6917-01 5 76028612 76028612 G A F2R Missense_Mutation p.A188T 0.23 deleterious(0) probably_damaging(0.938) TCGA-EI-6917-01 5 76028863 76028863 C A F2R Missense_Mutation p.F271L 0.27 deleterious(0) probably_damaging(0.951) TCGA-EI-6917-01 5 76128740 76128740 G A F2RL1 Missense_Mutation p.R103Q 0.21 deleterious(0.04) probably_damaging(0.996) TCGA-EI-6917-01 5 76129450 76129450 G A F2RL1 Missense_Mutation p.D340N 0.23 deleterious(0) probably_damaging(0.949) TCGA-EI-6917-01 5 78415085 78415085 G A BHMT Missense_Mutation p.R57H 0.29 deleterious(0.03) benign(0.177) TCGA-EI-6917-01 5 78422030 78422030 G A BHMT Missense_Mutation p.D263N 0.17 tolerated(0.34) benign(0.374) TCGA-EI-6917-01 5 7867551 7867551 G A FASTKD3 Missense_Mutation p.R216C 0.22 deleterious(0.04) possibly_damaging(0.462) TCGA-EI-6917-01 5 78981040 78981040 A C PAPD4 Missense_Mutation p.N467H 0.24 deleterious(0.02) benign(0.155) TCGA-EI-6917-01 5 79029209 79029209 G T CMYA5 Nonsense_Mutation p.E1541* 0.29 TCGA-EI-6917-01 5 79032024 79032024 C A CMYA5 Missense_Mutation p.S2479Y 0.32 benign(0.133) TCGA-EI-6917-01 5 79616365 79616365 G T SPZ1 Nonsense_Mutation p.E111* 0.20 TCGA-EI-6917-01 5 79616367 79616367 A C SPZ1 Missense_Mutation p.E111D 0.20 tolerated_low_confidence(0.19) benign(0.097) TCGA-EI-6917-01 5 79616659 79616659 G T SPZ1 Missense_Mutation p.D209Y 0.24 tolerated(0.05) possibly_damaging(0.839) TCGA-EI-6917-01 5 79815634 79815634 C T FAM151B Missense_Mutation p.A147V 0.20 tolerated(0.05) benign(0.33) TCGA-EI-6917-01 5 79815653 79815653 C T FAM151B Silent p.T153T 0.20 TCGA-EI-6917-01 5 79837621 79837621 A G FAM151B Silent p.K267K 0.19 TCGA-EI-6917-01 5 79855013 79855013 C A ANKRD34B Nonsense_Mutation p.E276* 0.19 TCGA-EI-6917-01 5 79855691 79855691 C T ANKRD34B Missense_Mutation p.A50T 0.22 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 5 80553638 80553638 A C CKMT2 Missense_Mutation p.K281T 0.21 deleterious(0.03) possibly_damaging(0.635) TCGA-EI-6917-01 5 80608439 80608439 G A ZCCHC9 Silent p.P258P 0.24 TCGA-EI-6917-01 5 82789720 82789720 G A VCAN Missense_Mutation p.D240N 0.23 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 82835313 82835313 A G VCAN Missense_Mutation p.Y2164C 0.25 tolerated(0.1) possibly_damaging(0.847) TCGA-EI-6917-01 5 82838043 82838043 G A VCAN Missense_Mutation p.G3074D 0.31 deleterious(0.02) benign(0.289) TCGA-EI-6917-01 5 82940384 82940384 G A HAPLN1 Silent p.F191F 0.26 TCGA-EI-6917-01 5 82948487 82948487 G A HAPLN1 Missense_Mutation p.S86L 0.24 tolerated(0.19) benign(0.028) TCGA-EI-6917-01 5 83239148 83239148 C A EDIL3 3'UTR 0.39 TCGA-EI-6917-01 5 85913938 85913938 C A COX7C Silent p.G22G 0.22 TCGA-EI-6917-01 5 864553 864553 T C BRD9 3'UTR 0.21 TCGA-EI-6917-01 5 89808053 89808053 T C POLR3G 3'UTR 0.38 TCGA-EI-6917-01 5 89921043 89921043 A G GPR98 Missense_Mutation p.T219A 0.27 possibly_damaging(0.874) TCGA-EI-6917-01 5 89925247 89925247 T C GPR98 Missense_Mutation p.I577T 0.30 benign(0) TCGA-EI-6917-01 5 89938771 89938771 C A GPR98 Missense_Mutation p.F822L 0.13 possibly_damaging(0.483) TCGA-EI-6917-01 5 89939789 89939789 C T GPR98 Missense_Mutation p.A908V 0.29 benign(0.003) TCGA-EI-6917-01 5 89949257 89949257 C T GPR98 Missense_Mutation p.S1289F 0.31 possibly_damaging(0.831) TCGA-EI-6917-01 5 89990130 89990130 C T GPR98 Silent p.F2519F 0.23 TCGA-EI-6917-01 5 90087050 90087050 C T GPR98 Nonsense_Mutation p.R4802* 0.26 TCGA-EI-6917-01 5 90149210 90149210 C T GPR98 Nonsense_Mutation p.R5772* 0.22 TCGA-EI-6917-01 5 90459629 90459629 C A GPR98 Missense_Mutation p.S6278Y 0.24 possibly_damaging(0.831) TCGA-EI-6917-01 5 92929474 92929474 G A NR2F1 Missense_Mutation p.E400K 0.20 tolerated(0.05) benign(0.211) TCGA-EI-6917-01 5 93159893 93159893 G A FAM172A Silent p.F289F 0.26 TCGA-EI-6917-01 5 93489608 93489608 C A KIAA0825 3'UTR 0.17 TCGA-EI-6917-01 5 93856382 93856382 C A KIAA0825 Nonsense_Mutation p.E181* 0.26 TCGA-EI-6917-01 5 93856418 93856418 G A KIAA0825 Nonsense_Mutation p.R169* 0.16 TCGA-EI-6917-01 5 94259691 94259691 G T MCTP1 Missense_Mutation p.F416L 0.25 tolerated(0.62) benign(0.002) TCGA-EI-6917-01 5 94749805 94749805 C T FAM81B Nonsense_Mutation p.R150* 0.24 TCGA-EI-6917-01 5 95226836 95226836 G A ELL2 Missense_Mutation p.R578C 0.26 deleterious(0.01) benign(0.163) TCGA-EI-6917-01 5 95278754 95278754 C A ELL2 Splice_Site p.X50_splice 0.26 TCGA-EI-6917-01 5 95761594 95761594 T G PCSK1 Missense_Mutation p.K109T 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 5 96248401 96248401 G T ERAP2 Missense_Mutation p.W805C 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 5 96504520 96504520 G T RIOK2 Missense_Mutation p.F272L 0.28 tolerated(0.06) possibly_damaging(0.861) TCGA-EI-6917-01 5 99897769 99897769 G A FAM174A Missense_Mutation p.R149K 0.28 tolerated(0.24) benign(0.027) TCGA-EI-6917-01 6 100062628 100062628 A G PRDM13 Missense_Mutation p.D706G 0.21 deleterious_low_confidence(0) benign(0.171) TCGA-EI-6917-01 6 100838895 100838895 C T SIM1 Missense_Mutation p.R548Q 0.30 deleterious_low_confidence(0.02) probably_damaging(0.928) TCGA-EI-6917-01 6 101127606 101127606 C T ASCC3 Missense_Mutation p.R725Q 0.23 deleterious(0) probably_damaging(0.938) TCGA-EI-6917-01 6 101296284 101296284 C T ASCC3 Missense_Mutation p.E181K 0.30 tolerated(0.45) benign(0.049) TCGA-EI-6917-01 6 10402840 10402840 C T TFAP2A Silent p.A256A 0.38 TCGA-EI-6917-01 6 10415033 10415033 G A TFAP2A Intron 0.31 TCGA-EI-6917-01 6 105548918 105548918 C A BVES 3'UTR 0.26 TCGA-EI-6917-01 6 105781292 105781292 C T PREP Silent p.T304T 0.27 TCGA-EI-6917-01 6 106555207 106555207 C A PRDM1 Missense_Mutation p.S775Y 0.11 deleterious(0.03) possibly_damaging(0.852) TCGA-EI-6917-01 6 10671695 10671695 C T C6orf52 Silent p.P151P 0.23 TCGA-EI-6917-01 6 106969299 106969299 T G AIM1 Missense_Mutation p.F998V 0.32 tolerated(0.23) benign(0.168) TCGA-EI-6917-01 6 107009324 107009324 C T AIM1 Silent p.V1621V 0.24 TCGA-EI-6917-01 6 107035674 107035674 C A RTN4IP1 Missense_Mutation p.K290N 0.19 tolerated(0.08) benign(0.297) TCGA-EI-6917-01 6 108250665 108250665 G A SEC63 Missense_Mutation p.R60C 0.37 deleterious(0) possibly_damaging(0.586) TCGA-EI-6917-01 6 10894154 10894154 G T SYCP2L Nonsense_Mutation p.E45* 0.23 TCGA-EI-6917-01 6 108985058 108985058 C T FOXO3 Missense_Mutation p.A341V 0.28 tolerated(0.35) benign(0.136) TCGA-EI-6917-01 6 109466547 109466547 T G CEP57L1 Silent p.V41V 0.32 TCGA-EI-6917-01 6 10984132 10984132 C T ELOVL2 Missense_Mutation p.R258Q 0.24 tolerated(0.31) benign(0.017) TCGA-EI-6917-01 6 110550090 110550090 G T CDC40 Missense_Mutation p.Q491H 0.18 tolerated(0.57) benign(0.005) TCGA-EI-6917-01 6 110763715 110763715 T G SLC22A16 Missense_Mutation p.Q305H 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 6 110763760 110763760 C A SLC22A16 Missense_Mutation p.E290D 0.15 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 6 11104843 11104843 C T ERVFRD-1 Missense_Mutation p.R234Q 0.30 tolerated(0.37) probably_damaging(0.921) TCGA-EI-6917-01 6 11104868 11104868 C T ERVFRD-1 Missense_Mutation p.E226K 0.34 tolerated(0.4) benign(0.327) TCGA-EI-6917-01 6 111213533 111213533 C T AMD1 Missense_Mutation p.R168W 0.18 tolerated(0.2) benign(0.013) TCGA-EI-6917-01 6 111214889 111214889 G A AMD1 3'UTR 0.31 TCGA-EI-6917-01 6 111621076 111621076 C T REV3L 3'UTR 0.23 TCGA-EI-6917-01 6 111628749 111628749 G A REV3L Nonsense_Mutation p.R3023* 0.20 TCGA-EI-6917-01 6 111688983 111688983 C T REV3L Missense_Mutation p.R2003Q 0.28 tolerated(0.23) benign(0.007) TCGA-EI-6917-01 6 111698915 111698915 T A REV3L Missense_Mutation p.D529V 0.39 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 6 111888876 111888876 C A TRAF3IP2 Missense_Mutation p.R437I 0.27 tolerated(0.09) possibly_damaging(0.786) TCGA-EI-6917-01 6 112024169 112024169 G A FYN Missense_Mutation p.R206C 0.28 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 6 112496518 112496518 C T LAMA4 Missense_Mutation p.E452K 0.22 tolerated(0.45) benign(0.2) TCGA-EI-6917-01 6 112672224 112672224 G T RFPL4B 3'UTR 0.36 TCGA-EI-6917-01 6 114266616 114266616 T C HDAC2 Missense_Mutation p.Y334C 0.33 deleterious(0) probably_damaging(0.932) TCGA-EI-6917-01 6 114378489 114378489 G A HS3ST5 Missense_Mutation p.R325C 0.15 tolerated(0.15) benign(0.009) TCGA-EI-6917-01 6 116784493 116784493 T G FAM26F Missense_Mutation p.I191M 0.28 deleterious(0) benign(0.428) TCGA-EI-6917-01 6 116949223 116949223 A C RSPH4A Missense_Mutation p.Q451H 0.20 deleterious(0.02) benign(0.376) TCGA-EI-6917-01 6 116949429 116949429 G A RSPH4A Missense_Mutation p.R520Q 0.19 tolerated(0.08) benign(0.319) TCGA-EI-6917-01 6 117019939 117019939 G T KPNA5 Missense_Mutation p.R138I 0.20 deleterious(0.02) benign(0.162) TCGA-EI-6917-01 6 117250120 117250120 G A RFX6 Missense_Mutation p.R866Q 0.28 tolerated_low_confidence(0.15) benign(0.02) TCGA-EI-6917-01 6 117629975 117629975 C T ROS1 Missense_Mutation p.R2184K 0.26 tolerated(0.52) benign(0.015) TCGA-EI-6917-01 6 117710577 117710577 C T ROS1 Silent p.S565S 0.22 TCGA-EI-6917-01 6 117853534 117853534 G A DCBLD1 Missense_Mutation p.A233T 0.23 deleterious(0) possibly_damaging(0.682) TCGA-EI-6917-01 6 117890921 117890921 A G DCBLD1 3'UTR 0.19 TCGA-EI-6917-01 6 118014217 118014217 G T NUS1 Missense_Mutation p.R143I 0.31 deleterious(0) probably_damaging(0.958) TCGA-EI-6917-01 6 118028130 118028130 C A NUS1 Missense_Mutation p.F278L 0.16 tolerated(0.46) benign(0.002) TCGA-EI-6917-01 6 118803025 118803025 C A CEP85L Missense_Mutation p.E557D 0.28 tolerated(0.36) benign(0.046) TCGA-EI-6917-01 6 118953699 118953699 C T CEP85L Missense_Mutation p.R53Q 0.42 tolerated(0.45) benign(0.441) TCGA-EI-6917-01 6 119296229 119296229 C A FAM184A Nonsense_Mutation p.E910* 0.19 TCGA-EI-6917-01 6 119345663 119345663 C T FAM184A Missense_Mutation p.E159K 0.32 deleterious(0.05) probably_damaging(0.978) TCGA-EI-6917-01 6 119510834 119510834 C T MAN1A1 Missense_Mutation p.R514Q 0.28 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 6 12125357 12125357 G A HIVEP1 Missense_Mutation p.V1777M 0.15 tolerated(0.08) benign(0.046) TCGA-EI-6917-01 6 121401825 121401825 G T TBC1D32 3'Flank 0.27 TCGA-EI-6917-01 6 121412008 121412008 A T TBC1D32 Silent p.V1215V 0.24 TCGA-EI-6917-01 6 121577331 121577331 C T TBC1D32 Missense_Mutation p.A612T 0.23 deleterious(0.04) benign(0.254) TCGA-EI-6917-01 6 121577398 121577398 C T TBC1D32 Silent p.S589S 0.22 TCGA-EI-6917-01 6 121768091 121768091 G A GJA1 Missense_Mutation p.R33Q 0.30 deleterious(0) probably_damaging(0.916) TCGA-EI-6917-01 6 122766203 122766203 G A SERINC1 Missense_Mutation p.R450C 0.13 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 6 123377052 123377052 G A CLVS2 Silent p.G259G 0.38 TCGA-EI-6917-01 6 124979529 124979529 C T NKAIN2 Silent p.L157L 0.30 TCGA-EI-6917-01 6 125621795 125621795 C T HDDC2 Missense_Mutation p.R32Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 6 126319743 126319743 G A TRMT11 Silent p.P145P 0.22 TCGA-EI-6917-01 6 127440357 127440357 C A RSPO3 Missense_Mutation p.S7Y 0.19 tolerated(0.27) benign(0.332) TCGA-EI-6917-01 6 127608740 127608740 C T RNF146 Nonsense_Mutation p.R328* 0.26 TCGA-EI-6917-01 6 127768640 127768640 C T KIAA0408 Missense_Mutation p.R275Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 6 127770989 127770989 G A KIAA0408 Nonsense_Mutation p.R186* 0.17 TCGA-EI-6917-01 6 127834190 127834190 G A SOGA3 Missense_Mutation p.A444V 0.22 deleterious(0) probably_damaging(0.978) TCGA-EI-6917-01 6 12933942 12933942 G A PHACTR1 Missense_Mutation p.E110K 0.30 unknown(0) TCGA-EI-6917-01 6 129475707 129475707 G A LAMA2 Missense_Mutation p.R362K 0.10 tolerated(0.43) benign(0.029) TCGA-EI-6917-01 6 129511427 129511427 C T LAMA2 Silent p.C515C 0.29 TCGA-EI-6917-01 6 129634146 129634146 C A LAMA2 Silent p.L1105L 0.24 TCGA-EI-6917-01 6 129725018 129725018 G A LAMA2 Missense_Mutation p.A1927T 0.38 tolerated(0.2) probably_damaging(0.999) TCGA-EI-6917-01 6 129939844 129939844 T G ARHGAP18 Missense_Mutation p.I314L 0.23 tolerated(0.48) benign(0.002) TCGA-EI-6917-01 6 130154629 130154629 G T TMEM244 Missense_Mutation p.L99I 0.14 tolerated(0.52) benign(0.067) TCGA-EI-6917-01 6 130465534 130465534 A C SAMD3 3'UTR 0.35 TCGA-EI-6917-01 6 131603007 131603007 C T AKAP7 3'UTR 0.25 TCGA-EI-6917-01 6 131958530 131958530 A C ENPP3 Missense_Mutation p.E2D 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-EI-6917-01 6 132199681 132199681 G T ENPP1 Splice_Site p.X632_splice 0.24 TCGA-EI-6917-01 6 132713400 132713400 C T MOXD1 Intron 0.29 TCGA-EI-6917-01 6 13287316 13287316 G A TBC1D7 Intron 0.22 TCGA-EI-6917-01 6 133004222 133004222 T G VNN1 3'UTR 0.35 TCGA-EI-6917-01 6 13306530 13306530 C T TBC1D7 Intron 0.30 TCGA-EI-6917-01 6 13306704 13306704 C T TBC1D7 Missense_Mutation p.E241K 0.23 tolerated(0.56) possibly_damaging(0.861) TCGA-EI-6917-01 6 133783563 133783563 C T EYA4 Silent p.A176A 0.26 TCGA-EI-6917-01 6 134349615 134349615 C T SLC2A12 Missense_Mutation p.V450I 0.19 tolerated(0.19) benign(0.016) TCGA-EI-6917-01 6 13470326 13470326 C T AL583828.1 Missense_Mutation p.E63K 0.23 possibly_damaging(0.502) TCGA-EI-6917-01 6 135306526 135306526 C T HBS1L Missense_Mutation p.R482Q 0.22 deleterious(0) possibly_damaging(0.691) TCGA-EI-6917-01 6 135358048 135358048 C T HBS1L Intron 0.58 TCGA-EI-6917-01 6 13657463 13657463 G A RANBP9 Missense_Mutation p.S261L 0.15 deleterious(0) benign(0.314) TCGA-EI-6917-01 6 136597096 136597096 C A BCLAF1 Nonsense_Mutation p.E523* 0.11 TCGA-EI-6917-01 6 136597190 136597190 C A BCLAF1 Missense_Mutation p.K491N 0.12 deleterious(0.03) possibly_damaging(0.607) TCGA-EI-6917-01 6 136601007 136601007 C A BCLAF1 5'UTR 0.26 TCGA-EI-6917-01 6 136878912 136878912 C T MAP3K5 Missense_Mutation p.R1370Q 0.32 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 6 137234724 137234724 A C PEX7 3'UTR 0.33 TCGA-EI-6917-01 6 13791055 13791055 G A MCUR1 Missense_Mutation p.R356C 0.20 deleterious(0) possibly_damaging(0.632) TCGA-EI-6917-01 6 138202424 138202424 G A TNFAIP3 Missense_Mutation p.E781K 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-EI-6917-01 6 138752501 138752501 C T NHSL1 Missense_Mutation p.R998H 0.28 tolerated_low_confidence(0.05) benign(0) TCGA-EI-6917-01 6 139206840 139206840 G A ECT2L Missense_Mutation p.R711Q 0.21 tolerated(0.25) benign(0.093) TCGA-EI-6917-01 6 139266732 139266732 G A REPS1 Missense_Mutation p.S127F 0.29 tolerated(0.2) possibly_damaging(0.708) TCGA-EI-6917-01 6 139583798 139583798 C T TXLNB Missense_Mutation p.R267Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 6 142741035 142741035 C T GPR126 Missense_Mutation p.A1038V 0.23 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 6 143749633 143749633 C T ADAT2 Silent p.S181S 0.23 TCGA-EI-6917-01 6 143780305 143780305 C T PEX3 Nonsense_Mutation p.R53* 0.23 TCGA-EI-6917-01 6 143823536 143823536 C T FUCA2 Missense_Mutation p.E307K 0.30 deleterious(0.04) benign(0.194) TCGA-EI-6917-01 6 144086446 144086446 C T PHACTR2 Missense_Mutation p.S248L 0.18 tolerated(0.07) probably_damaging(0.993) TCGA-EI-6917-01 6 144093564 144093564 G A PHACTR2 Missense_Mutation p.E468K 0.21 deleterious(0) benign(0.439) TCGA-EI-6917-01 6 144184235 144184235 C T LTV1 Nonsense_Mutation p.R377* 0.22 TCGA-EI-6917-01 6 144509501 144509501 G A STX11 3'UTR 0.50 TCGA-EI-6917-01 6 144613013 144613013 G A UTRN Missense_Mutation p.E17K 0.24 deleterious_low_confidence(0) benign(0.355) TCGA-EI-6917-01 6 144750863 144750863 G A UTRN Missense_Mutation p.A281T 0.21 tolerated(0.43) benign(0.001) TCGA-EI-6917-01 6 145115110 145115110 C T UTRN Missense_Mutation p.R3021C 0.18 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 6 146209198 146209198 A G SHPRH Missense_Mutation p.I1638T 0.23 deleterious(0.01) possibly_damaging(0.864) TCGA-EI-6917-01 6 146719949 146719949 G A GRM1 Missense_Mutation p.E592K 0.19 deleterious(0.01) probably_damaging(0.921) TCGA-EI-6917-01 6 146977948 146977948 G T ADGB Missense_Mutation p.K148N 0.17 deleterious(0.01) possibly_damaging(0.817) TCGA-EI-6917-01 6 147073731 147073731 C T ADGB Missense_Mutation p.A1144V 0.23 tolerated(1) benign(0.001) TCGA-EI-6917-01 6 147560385 147560385 C T STXBP5 Missense_Mutation p.S137L 0.20 deleterious(0) possibly_damaging(0.637) TCGA-EI-6917-01 6 147885571 147885571 G A SAMD5 Silent p.P167P 0.20 TCGA-EI-6917-01 6 149275061 149275061 A G UST Silent p.R167R 0.39 TCGA-EI-6917-01 6 149395029 149395029 C T UST Missense_Mutation p.A333V 0.33 tolerated(0.32) benign(0.114) TCGA-EI-6917-01 6 149901781 149901781 A C GINM1 Missense_Mutation p.E213D 0.26 tolerated(0.06) possibly_damaging(0.884) TCGA-EI-6917-01 6 149944366 149944366 G T KATNA1 Nonsense_Mutation p.S125* 0.18 TCGA-EI-6917-01 6 150023019 150023019 G A LATS1 Nonsense_Mutation p.R82* 0.20 TCGA-EI-6917-01 6 150059872 150059872 C T NUP43 Missense_Mutation p.R182Q 0.41 tolerated(0.1) benign(0.01) TCGA-EI-6917-01 6 150064827 150064827 C T NUP43 Missense_Mutation p.A90T 0.12 tolerated(1) benign(0.001) TCGA-EI-6917-01 6 150111142 150111142 C T PCMT1 Missense_Mutation p.A140V 0.15 tolerated(0.32) benign(0.359) TCGA-EI-6917-01 6 150240548 150240548 C T RAET1G Intron 0.27 TCGA-EI-6917-01 6 151239797 151239797 G A MTHFD1L Missense_Mutation p.R326Q 0.21 deleterious(0) possibly_damaging(0.63) TCGA-EI-6917-01 6 151936783 151936783 C A CCDC170 Missense_Mutation p.S639Y 0.27 deleterious(0.02) benign(0.047) TCGA-EI-6917-01 6 152476160 152476160 C T SYNE1 Missense_Mutation p.R7999Q 0.18 possibly_damaging(0.588) TCGA-EI-6917-01 6 152477179 152477179 G A SYNE1 Silent p.N7948N 0.22 TCGA-EI-6917-01 6 152534749 152534749 C T SYNE1 Missense_Mutation p.E7498K 0.22 possibly_damaging(0.774) TCGA-EI-6917-01 6 152554995 152554995 C T SYNE1 Missense_Mutation p.R6878H 0.39 probably_damaging(0.988) TCGA-EI-6917-01 6 152576770 152576770 C T SYNE1 Missense_Mutation p.A6406T 0.27 benign(0.043) TCGA-EI-6917-01 6 152615241 152615241 A C SYNE1 Missense_Mutation p.L5902V 0.21 possibly_damaging(0.757) TCGA-EI-6917-01 6 152642938 152642938 G A SYNE1 Missense_Mutation p.S5334F 0.25 benign(0.192) TCGA-EI-6917-01 6 152644801 152644801 C T SYNE1 Silent p.S5243S 0.11 TCGA-EI-6917-01 6 152646290 152646290 G A SYNE1 Nonsense_Mutation p.R5196* 0.30 TCGA-EI-6917-01 6 152655269 152655269 C T SYNE1 Missense_Mutation p.R4223H 0.28 benign(0.001) TCGA-EI-6917-01 6 152772192 152772192 T G SYNE1 Missense_Mutation p.K1059T 0.23 benign(0.423) TCGA-EI-6917-01 6 153019077 153019077 T G MYCT1 Missense_Mutation p.F14V 0.18 deleterious_low_confidence(0.03) benign(0.025) TCGA-EI-6917-01 6 153073312 153073312 A G VIP 5'UTR 0.11 TCGA-EI-6917-01 6 155577532 155577532 T G TIAM2 Intron 0.17 TCGA-EI-6917-01 6 155577662 155577662 G A TIAM2 Missense_Mutation p.E1505K 0.25 tolerated(0.16) benign(0.11) TCGA-EI-6917-01 6 155752055 155752055 A C NOX3 Missense_Mutation p.I271M 0.30 deleterious(0) benign(0.044) TCGA-EI-6917-01 6 157517438 157517438 T G ARID1B Missense_Mutation p.S1334R 0.16 possibly_damaging(0.668) TCGA-EI-6917-01 6 158487517 158487517 G A SYNJ2 Missense_Mutation p.E523K 0.26 tolerated(0.21) possibly_damaging(0.7) TCGA-EI-6917-01 6 158850873 158850873 G A TULP4 Missense_Mutation p.E163K 0.25 deleterious(0.02) probably_damaging(0.986) TCGA-EI-6917-01 6 159049469 159049469 C T TMEM181 Missense_Mutation p.A517V 0.24 tolerated(0.22) benign(0.284) TCGA-EI-6917-01 6 159636168 159636168 G A FNDC1 Missense_Mutation p.E218K 0.28 deleterious(0.03) unknown(0) TCGA-EI-6917-01 6 159653155 159653155 G A FNDC1 Silent p.S537S 0.19 TCGA-EI-6917-01 6 159653869 159653869 G A FNDC1 Silent p.T775T 0.17 TCGA-EI-6917-01 6 159655426 159655426 G A FNDC1 Silent p.P1294P 0.34 TCGA-EI-6917-01 6 159677664 159677664 G A FNDC1 Splice_Site p.X1725_splice 0.18 TCGA-EI-6917-01 6 160221411 160221411 C T PNLDC1 5'UTR 0.28 TCGA-EI-6917-01 6 160412325 160412325 G A IGF2R Missense_Mutation p.D87N 0.33 tolerated(0.62) benign(0.003) TCGA-EI-6917-01 6 160494390 160494390 C T IGF2R Silent p.F1612F 0.29 TCGA-EI-6917-01 6 160903740 160903740 G T LPAL2 RNA 0.26 TCGA-EI-6917-01 6 161127561 161127561 G T PLG Nonsense_Mutation p.E58* 0.22 TCGA-EI-6917-01 6 163985799 163985799 G T QKI Intron 0.30 TCGA-EI-6917-01 6 163986994 163986994 G A QKI Intron 0.27 TCGA-EI-6917-01 6 165693363 165693363 A G C6orf118 3'UTR 0.36 TCGA-EI-6917-01 6 167343036 167343036 C A RNASET2 3'UTR 0.25 TCGA-EI-6917-01 6 167453573 167453573 C G FGFR1OP 3'UTR 0.24 TCGA-EI-6917-01 6 167787872 167787872 G A TCP10 Silent p.F252F 0.26 TCGA-EI-6917-01 6 168265256 168265256 G T MLLT4 Missense_Mutation p.R44I 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 6 168348590 168348590 T C MLLT4 Missense_Mutation p.I1197T 0.15 deleterious_low_confidence(0.05) possibly_damaging(0.823) TCGA-EI-6917-01 6 168445627 168445627 G A KIF25 Missense_Mutation p.R369Q 0.18 deleterious(0.04) possibly_damaging(0.63) TCGA-EI-6917-01 6 168708013 168708013 C T DACT2 3'UTR 0.28 TCGA-EI-6917-01 6 168708019 168708019 G A DACT2 3'UTR 0.22 TCGA-EI-6917-01 6 168711110 168711110 G A DACT2 Silent p.S132S 0.25 TCGA-EI-6917-01 6 169008849 169008849 G A SMOC2 Silent p.P290P 0.18 TCGA-EI-6917-01 6 169640685 169640685 C T THBS2 Silent p.S298S 0.18 TCGA-EI-6917-01 6 170068129 170068129 A G WDR27 Silent p.C203C 0.27 TCGA-EI-6917-01 6 170592416 170592416 C T DLL1 Missense_Mutation p.D651N 0.37 tolerated(0.2) benign(0.064) TCGA-EI-6917-01 6 170597456 170597456 C T DLL1 Missense_Mutation p.E181K 0.20 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 6 17284940 17284940 C T RBM24 Silent p.F115F 0.16 TCGA-EI-6917-01 6 17426915 17426915 G T CAP2 Missense_Mutation p.E72D 0.19 tolerated(0.24) benign(0.026) TCGA-EI-6917-01 6 17637996 17637996 C T NUP153 Missense_Mutation p.A618T 0.36 tolerated(1) benign(0.004) TCGA-EI-6917-01 6 20490607 20490607 C T E2F3 Silent p.F448F 0.33 TCGA-EI-6917-01 6 22290576 22290576 C T PRL Missense_Mutation p.D107N 0.18 tolerated(0.11) possibly_damaging(0.716) TCGA-EI-6917-01 6 22297221 22297221 C T PRL 5'UTR 0.11 TCGA-EI-6917-01 6 22570153 22570153 G A HDGFL1 Missense_Mutation p.D117N 0.37 deleterious(0.01) benign(0.264) TCGA-EI-6917-01 6 24596141 24596141 G A KIAA0319 Missense_Mutation p.S254F 0.23 tolerated(0.1) benign(0) TCGA-EI-6917-01 6 24716395 24716395 C T C6orf62 Missense_Mutation p.R96Q 0.25 tolerated(0.15) benign(0.011) TCGA-EI-6917-01 6 25972262 25972262 G T TRIM38 Nonsense_Mutation p.E225* 0.26 TCGA-EI-6917-01 6 26091204 26091204 G A HFE Missense_Mutation p.R71Q 0.31 tolerated(0.41) possibly_damaging(0.875) TCGA-EI-6917-01 6 26216658 26216658 C T HIST1H2BG Missense_Mutation p.E72K 0.32 deleterious_low_confidence(0.03) benign(0.083) TCGA-EI-6917-01 6 26234703 26234703 T G HIST1H1D Missense_Mutation p.K153N 0.24 tolerated(0.22) unknown(0) TCGA-EI-6917-01 6 26273416 26273416 C T HIST1H2BI Silent p.F71F 0.25 TCGA-EI-6917-01 6 26368875 26368875 G A BTN3A2 Silent p.P56P 0.10 TCGA-EI-6917-01 6 26405726 26405726 C A BTN3A1 5'UTR 0.27 TCGA-EI-6917-01 6 26406219 26406219 G A BTN3A1 Silent p.P56P 0.26 TCGA-EI-6917-01 6 26545584 26545584 G A HMGN4 Silent p.E50E 0.19 TCGA-EI-6917-01 6 27114534 27114534 G A HIST1H2BK Missense_Mutation p.S15L 0.14 tolerated_low_confidence(0.1) benign(0.08) TCGA-EI-6917-01 6 27418996 27418996 C T ZNF184 3'UTR 0.29 TCGA-EI-6917-01 6 28194865 28194865 G T ZSCAN9 Translation_Start_Site p.M1? 0.19 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-EI-6917-01 6 28228491 28228491 C A NKAPL 3'UTR 0.33 TCGA-EI-6917-01 6 28359270 28359270 C A ZSCAN12 Missense_Mutation p.R266I 0.31 tolerated(0.09) benign(0.044) TCGA-EI-6917-01 6 28540813 28540813 C A SCAND3 Missense_Mutation p.K951N 0.31 tolerated_low_confidence(0.52) probably_damaging(0.997) TCGA-EI-6917-01 6 28541599 28541599 C T SCAND3 Silent p.A689A 0.41 TCGA-EI-6917-01 6 28889704 28889704 G A TRIM27 Missense_Mutation p.R161W 0.19 deleterious(0.01) benign(0.346) TCGA-EI-6917-01 6 28963428 28963429 - T ZNF311 Frame_Shift_Ins p.D451Rfs*17 0.20 TCGA-EI-6917-01 6 28963809 28963809 T C ZNF311 Missense_Mutation p.T324A 0.31 tolerated(0.22) benign(0.001) TCGA-EI-6917-01 6 29141816 29141816 T C OR2J2 Missense_Mutation p.V135A 0.27 tolerated(0.15) benign(0.015) TCGA-EI-6917-01 6 29231672 29231672 C T XXbac-BPG308J9.3 RNA 0.22 TCGA-EI-6917-01 6 29429920 29429920 G A OR2H1 Missense_Mutation p.C125Y 0.23 deleterious(0) possibly_damaging(0.617) TCGA-EI-6917-01 6 29430506 29430506 C T OR2H1 3'UTR 0.18 TCGA-EI-6917-01 6 29598310 29598310 C T GABBR1 Missense_Mutation p.D134N 0.35 tolerated_low_confidence(0.15) benign(0.255) TCGA-EI-6917-01 6 29641146 29641146 G A ZFP57 Missense_Mutation p.R248C 0.37 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 6 29795668 29795668 C T HLA-G Missense_Mutation p.A16V 0.21 tolerated_low_confidence(0.17) possibly_damaging(0.507) TCGA-EI-6917-01 6 30128548 30128548 C T TRIM10 Missense_Mutation p.D30N 0.30 tolerated(0.05) probably_damaging(0.921) TCGA-EI-6917-01 6 30879231 30879231 G T GTF2H4 Missense_Mutation p.E232D 0.24 tolerated(0.17) benign(0.174) TCGA-EI-6917-01 6 30917342 30917342 G T DPCR1 Missense_Mutation p.R367S 0.27 tolerated(0.48) unknown(0) TCGA-EI-6917-01 6 31125210 31125210 G T CCHCR1 Missense_Mutation p.F56L 0.14 tolerated_low_confidence(0.62) benign(0.001) TCGA-EI-6917-01 6 31129601 31129601 G A TCF19 Missense_Mutation p.A206T 0.54 tolerated(1) benign(0) TCGA-EI-6917-01 6 311937 311937 A G DUSP22 Missense_Mutation p.H38R 0.11 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 6 31541176 31541176 C T LTA Silent p.F108F 0.24 TCGA-EI-6917-01 6 31750903 31750903 C T VARS Missense_Mutation p.D578N 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 6 31911272 31911272 G A CFB Missense_Mutation p.G359D 0.29 tolerated(0.71) benign(0) TCGA-EI-6917-01 6 31922644 31922644 G A NELFE Nonsense_Mutation p.R144* 0.29 TCGA-EI-6917-01 6 31947235 31947235 G T STK19 Missense_Mutation p.Q240H 0.25 deleterious(0.02) benign(0.035) TCGA-EI-6917-01 6 32015695 32015695 G A TNXB 5'Flank 0.38 TCGA-EI-6917-01 6 32030243 32030243 C T TNXB Missense_Mutation p.E2287K 0.28 possibly_damaging(0.647) TCGA-EI-6917-01 6 32063567 32063567 C T TNXB Missense_Mutation p.C688Y 0.25 possibly_damaging(0.808) TCGA-EI-6917-01 6 32122956 32122956 G A PPT2 Silent p.S117S 0.15 TCGA-EI-6917-01 6 32151135 32151135 G A AGER Missense_Mutation p.S129F 0.29 deleterious(0.01) benign(0.035) TCGA-EI-6917-01 6 32191684 32191684 G A NOTCH4 Silent p.L8L 0.42 TCGA-EI-6917-01 6 32816451 32816451 C T TAP1 Missense_Mutation p.R575H 0.16 tolerated(0.06) benign(0.011) TCGA-EI-6917-01 6 32825086 32825086 G A PSMB9 Missense_Mutation p.E59K 0.25 deleterious(0.03) benign(0.005) TCGA-EI-6917-01 6 32847483 32847483 T G PPP1R2P1 RNA 0.19 TCGA-EI-6917-01 6 32902622 32902622 G T HLA-DMB 3'UTR 0.17 TCGA-EI-6917-01 6 33147233 33147233 C T COL11A2 Missense_Mutation p.G407E 0.25 probably_damaging(0.994) TCGA-EI-6917-01 6 33234429 33234429 C T VPS52 Missense_Mutation p.E396K 0.13 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 6 33261819 33261819 G A RGL2 Missense_Mutation p.R460W 0.26 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 6 33272136 33272136 C T TAPBP Missense_Mutation p.R383Q 0.32 tolerated(0.23) probably_damaging(0.971) TCGA-EI-6917-01 6 33287613 33287613 C T DAXX Missense_Mutation p.S495N 0.30 deleterious(0.04) benign(0.003) TCGA-EI-6917-01 6 33289660 33289660 C T DAXX Missense_Mutation p.E15K 0.24 tolerated(0.05) probably_damaging(0.997) TCGA-EI-6917-01 6 33424855 33424855 C A ZBTB9 3'UTR 0.26 TCGA-EI-6917-01 6 33424876 33424876 G A ZBTB9 3'UTR 0.21 TCGA-EI-6917-01 6 34004036 34004036 G A GRM4 Silent p.I617I 0.32 TCGA-EI-6917-01 6 34029715 34029715 G A GRM4 Missense_Mutation p.S276L 0.17 deleterious(0.02) benign(0.269) TCGA-EI-6917-01 6 34962130 34962130 G A ANKS1A Missense_Mutation p.E452K 0.30 deleterious_low_confidence(0.01) benign(0.222) TCGA-EI-6917-01 6 35047439 35047439 C T ANKS1A Silent p.L810L 0.26 TCGA-EI-6917-01 6 36040714 36040714 G A MAPK14 Missense_Mutation p.D124N 0.22 tolerated(0.09) benign(0.068) TCGA-EI-6917-01 6 37631869 37631869 C T MDGA1 Silent p.A27A 0.30 TCGA-EI-6917-01 6 38029518 38029518 G T ZFAND3 Nonsense_Mutation p.E88* 0.36 TCGA-EI-6917-01 6 3851375 3851375 A G FAM50B 3'UTR 0.21 TCGA-EI-6917-01 6 3851540 3851540 C T FAM50B 3'UTR 0.34 TCGA-EI-6917-01 6 38560599 38560599 G A BTBD9 Silent p.I189I 0.22 TCGA-EI-6917-01 6 38690557 38690557 G A DNAH8 5'Flank 0.36 TCGA-EI-6917-01 6 38704872 38704872 G A DNAH8 Silent p.S47S 0.28 TCGA-EI-6917-01 6 38729555 38729555 G A DNAH8 Silent p.T314T 0.30 TCGA-EI-6917-01 6 38840389 38840389 G A DNAH8 Silent p.T2139T 0.18 TCGA-EI-6917-01 6 38854772 38854772 A C DNAH8 Missense_Mutation p.K2605T 0.28 probably_damaging(0.996) TCGA-EI-6917-01 6 38863997 38863997 A C DNAH8 Missense_Mutation p.E2762A 0.31 probably_damaging(0.977) TCGA-EI-6917-01 6 39041416 39041416 C T GLP1R Missense_Mutation p.L232F 0.13 tolerated(0.78) possibly_damaging(0.609) TCGA-EI-6917-01 6 39077120 39077120 C T SAYSD1 Intron 0.22 TCGA-EI-6917-01 6 39158716 39158716 C T KCNK5 Missense_Mutation p.E484K 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EI-6917-01 6 39272382 39272382 G T KCNK17 Silent p.I134I 0.23 TCGA-EI-6917-01 6 39845991 39845991 G T DAAM2 Missense_Mutation p.E438D 0.23 deleterious(0) possibly_damaging(0.779) TCGA-EI-6917-01 6 39867871 39867871 C T DAAM2 Missense_Mutation p.R900C 0.25 deleterious(0.04) benign(0) TCGA-EI-6917-01 6 39869081 39869081 G A DAAM2 Missense_Mutation p.A939T 0.17 tolerated(0.56) benign(0.031) TCGA-EI-6917-01 6 40359708 40359708 C T LRFN2 Missense_Mutation p.E782K 0.18 deleterious(0) possibly_damaging(0.678) TCGA-EI-6917-01 6 4069131 4069131 C T FAM217A Missense_Mutation p.M442I 0.26 tolerated(1) benign(0) TCGA-EI-6917-01 6 41062171 41062171 G A NFYA Missense_Mutation p.A309T 0.27 tolerated(0.1) benign(0.237) TCGA-EI-6917-01 6 4125508 4125508 G A ECI2 Silent p.F257F 0.41 TCGA-EI-6917-01 6 41897872 41897872 G A BYSL Missense_Mutation p.R145H 0.33 deleterious(0) benign(0.218) TCGA-EI-6917-01 6 42162530 42162530 G A GUCA1B Missense_Mutation p.A10V 0.22 tolerated(0.19) benign(0.001) TCGA-EI-6917-01 6 42237239 42237239 G A TRERF1 Silent p.S30S 0.18 TCGA-EI-6917-01 6 42571393 42571393 G A UBR2 Missense_Mutation p.R200Q 0.31 tolerated(0.44) benign(0) TCGA-EI-6917-01 6 42797901 42797901 C A GLTSCR1L Missense_Mutation p.F610L 0.37 tolerated(0.77) benign(0.003) TCGA-EI-6917-01 6 43154809 43154809 G A CUL9 Missense_Mutation p.A455T 0.42 tolerated(0.6) benign(0.002) TCGA-EI-6917-01 6 43305257 43305257 G T ZNF318 Missense_Mutation p.S2160Y 0.21 possibly_damaging(0.807) TCGA-EI-6917-01 6 43307870 43307870 G T ZNF318 Nonsense_Mutation p.S1289* 0.24 TCGA-EI-6917-01 6 43325265 43325265 G A ZNF318 Nonsense_Mutation p.R263* 0.21 TCGA-EI-6917-01 6 43488771 43488771 C T POLR1C Nonsense_Mutation p.R303* 0.28 TCGA-EI-6917-01 6 43618212 43618212 G A RSPH9 Missense_Mutation p.E110K 0.22 tolerated(0.21) benign(0.192) TCGA-EI-6917-01 6 44227977 44227977 T C NFKBIE Missense_Mutation p.T414A 0.33 tolerated(0.32) benign(0.18) TCGA-EI-6917-01 6 44253854 44253854 G A TCTE1 Silent p.G231G 0.20 TCGA-EI-6917-01 6 44394300 44394300 G T CDC5L Nonsense_Mutation p.E578* 0.18 TCGA-EI-6917-01 6 45399726 45399726 G A RUNX2 Missense_Mutation p.D184N 0.22 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 6 46128997 46128997 A C ENPP5 3'UTR 0.15 TCGA-EI-6917-01 6 46135652 46135652 A C ENPP5 Missense_Mutation p.F116L 0.16 deleterious(0) possibly_damaging(0.884) TCGA-EI-6917-01 6 46661831 46661831 C T TDRD6 Missense_Mutation p.S1989L 0.24 tolerated(0.08) benign(0.017) TCGA-EI-6917-01 6 46803159 46803159 C T MEP1A Missense_Mutation p.R653W 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6917-01 6 46993677 46993677 C A GPR110 Missense_Mutation p.D64Y 0.30 tolerated(0.09) benign(0.112) TCGA-EI-6917-01 6 47544330 47544330 A T CD2AP Missense_Mutation p.K267I 0.12 deleterious(0) probably_damaging(0.961) TCGA-EI-6917-01 6 47548599 47548599 G T CD2AP Splice_Site p.X337_splice 0.23 TCGA-EI-6917-01 6 47649535 47649535 G T GPR111 Nonsense_Mutation p.E414* 0.44 TCGA-EI-6917-01 6 49412413 49412413 C T MUT Missense_Mutation p.E539K 0.18 tolerated_low_confidence(0.45) benign(0.002) TCGA-EI-6917-01 6 49585927 49585927 T C RHAG Missense_Mutation p.I116V 0.35 tolerated(0.05) probably_damaging(0.997) TCGA-EI-6917-01 6 49587040 49587040 A C RHAG Missense_Mutation p.F65V 0.30 deleterious(0) probably_damaging(0.974) TCGA-EI-6917-01 6 49660429 49660429 G A CRISP2 3'UTR 0.22 TCGA-EI-6917-01 6 49931794 49931794 A C DEFB114 Missense_Mutation p.F9V 0.20 deleterious_low_confidence(0) benign(0.004) TCGA-EI-6917-01 6 49976866 49976866 A G DEFB110 Silent p.S58S 0.30 TCGA-EI-6917-01 6 51497504 51497504 G A PKHD1 Nonsense_Mutation p.R3842* 0.23 TCGA-EI-6917-01 6 51890956 51890956 C A PKHD1 Nonsense_Mutation p.G1218* 0.40 TCGA-EI-6917-01 6 51913319 51913319 C T PKHD1 Missense_Mutation p.R793H 0.24 tolerated(0.45) benign(0.009) TCGA-EI-6917-01 6 52270344 52270344 T C PAQR8 3'UTR 0.21 TCGA-EI-6917-01 6 52343895 52343895 G A EFHC1 Missense_Mutation p.D447N 0.23 deleterious(0.04) possibly_damaging(0.573) TCGA-EI-6917-01 6 53133917 53133917 C A ELOVL5 3'UTR 0.24 TCGA-EI-6917-01 6 53379056 53379056 C T GCLC Silent p.P233P 0.34 TCGA-EI-6917-01 6 53519148 53519148 C T KLHL31 Missense_Mutation p.R308Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 6 53883756 53883756 G A MLIP 5'UTR 0.32 TCGA-EI-6917-01 6 55128601 55128601 G A HCRTR2 Missense_Mutation p.R248H 0.16 tolerated(0.24) benign(0.12) TCGA-EI-6917-01 6 55145214 55145214 G A HCRTR2 Silent p.A359A 0.27 TCGA-EI-6917-01 6 55739388 55739388 T G BMP5 Missense_Mutation p.E92D 0.29 tolerated(0.77) benign(0.007) TCGA-EI-6917-01 6 56035597 56035597 C A COL21A1 Missense_Mutation p.K292N 0.23 tolerated(0.13) possibly_damaging(0.71) TCGA-EI-6917-01 6 56047428 56047428 C T COL21A1 5'UTR 0.24 TCGA-EI-6917-01 6 56362287 56362287 C T DST Missense_Mutation p.E4082K 0.29 probably_damaging(0.999) TCGA-EI-6917-01 6 56391186 56391186 G A DST Silent p.I3411I 0.30 TCGA-EI-6917-01 6 56462568 56462568 C T DST Silent p.E1432E 0.22 TCGA-EI-6917-01 6 56470074 56470074 C A DST Intron 0.29 TCGA-EI-6917-01 6 56470335 56470335 C T DST Intron 0.19 TCGA-EI-6917-01 6 56481804 56481804 G A DST Intron 0.23 TCGA-EI-6917-01 6 56496188 56496188 C T DST Splice_Site p.X785_splice 0.20 TCGA-EI-6917-01 6 56846658 56846658 G T BEND6 Missense_Mutation p.R17I 0.24 tolerated_low_confidence(0.07) benign(0.103) TCGA-EI-6917-01 6 56883224 56883224 A G BEND6 Missense_Mutation p.T240A 0.31 deleterious(0.03) probably_damaging(0.983) TCGA-EI-6917-01 6 56966830 56966830 G A ZNF451 Intron 0.17 TCGA-EI-6917-01 6 6152106 6152106 C T F13A1 Missense_Mutation p.R662Q 0.52 tolerated(0.35) benign(0) TCGA-EI-6917-01 6 6267040 6267040 G A F13A1 Missense_Mutation p.R108C 0.26 tolerated(0.07) possibly_damaging(0.892) TCGA-EI-6917-01 6 62757892 62757892 A G KHDRBS2 Missense_Mutation p.F76S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 6 64004906 64004906 C A LGSN Missense_Mutation p.M25I 0.27 tolerated_low_confidence(0.34) benign(0.001) TCGA-EI-6917-01 6 65098672 65098672 C T EYS Missense_Mutation p.E1997K 0.22 tolerated(0.37) benign(0) TCGA-EI-6917-01 6 65622389 65622389 T C EYS Missense_Mutation p.I877V 0.23 tolerated(0.78) benign(0.001) TCGA-EI-6917-01 6 69666026 69666026 G A BAI3 Missense_Mutation p.E436K 0.21 deleterious(0.01) benign(0.385) TCGA-EI-6917-01 6 69759194 69759194 C T BAI3 Silent p.G763G 0.19 TCGA-EI-6917-01 6 70071326 70071326 C A BAI3 Missense_Mutation p.F1387L 0.27 tolerated(0.74) benign(0.005) TCGA-EI-6917-01 6 70410689 70410689 G A LMBRD1 Nonsense_Mutation p.R386* 0.22 TCGA-EI-6917-01 6 70411381 70411381 G T LMBRD1 Missense_Mutation p.A346D 0.21 tolerated(0.17) benign(0.059) TCGA-EI-6917-01 6 73102419 73102419 C T RIMS1 Nonsense_Mutation p.R1509* 0.17 TCGA-EI-6917-01 6 74073424 74073424 C T KHDC3L Silent p.V165V 0.21 TCGA-EI-6917-01 6 74135023 74135023 C A MB21D1 Missense_Mutation p.R499I 0.24 tolerated(0.37) benign(0.004) TCGA-EI-6917-01 6 74521949 74521949 G A CD109 Missense_Mutation p.A1242T 0.25 tolerated(0.62) benign(0.001) TCGA-EI-6917-01 6 75801077 75801077 C T COL12A1 Missense_Mutation p.R2905Q 0.33 probably_damaging(0.99) TCGA-EI-6917-01 6 7580442 7580442 G A DSP Missense_Mutation p.R1340H 0.37 benign(0.002) TCGA-EI-6917-01 6 75825601 75825601 C A COL12A1 Missense_Mutation p.K2532N 0.17 probably_damaging(0.996) TCGA-EI-6917-01 6 75875325 75875325 T G COL12A1 Missense_Mutation p.M961L 0.22 benign(0.001) TCGA-EI-6917-01 6 75884826 75884826 C T COL12A1 Missense_Mutation p.A880T 0.24 benign(0.002) TCGA-EI-6917-01 6 7601644 7601644 G A SNRNP48 Missense_Mutation p.R161H 0.35 deleterious(0) possibly_damaging(0.895) TCGA-EI-6917-01 6 76023990 76023990 T G FILIP1 Missense_Mutation p.K520Q 0.26 deleterious(0) probably_damaging(0.965) TCGA-EI-6917-01 6 76421059 76421059 G A SENP6 Missense_Mutation p.D946N 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 6 79664635 79664635 C T PHIP Missense_Mutation p.D1317N 0.18 tolerated(0.22) probably_damaging(0.934) TCGA-EI-6917-01 6 79668267 79668267 C T PHIP Missense_Mutation p.R1236Q 0.27 tolerated(0.18) probably_damaging(0.994) TCGA-EI-6917-01 6 79711676 79711676 G A PHIP Missense_Mutation p.P607S 0.11 deleterious(0) benign(0.015) TCGA-EI-6917-01 6 79726309 79726309 C T PHIP Missense_Mutation p.R396Q 0.19 tolerated(1) benign(0.278) TCGA-EI-6917-01 6 80203459 80203459 C T LCA5 Silent p.S243S 0.24 TCGA-EI-6917-01 6 80910698 80910698 G A BCKDHB Missense_Mutation p.E264K 0.21 deleterious(0.01) benign(0.066) TCGA-EI-6917-01 6 83921753 83921753 C T ME1 Missense_Mutation p.E537K 0.20 tolerated(0.31) benign(0.008) TCGA-EI-6917-01 6 83963427 83963427 T G ME1 Missense_Mutation p.E245D 0.24 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 6 84884585 84884585 G A KIAA1009 Missense_Mutation p.A629V 0.28 deleterious(0.01) possibly_damaging(0.903) TCGA-EI-6917-01 6 84925057 84925057 G A KIAA1009 Missense_Mutation p.S149L 0.26 deleterious(0) possibly_damaging(0.827) TCGA-EI-6917-01 6 87726351 87726351 C A HTR1E 3'Flank 0.26 TCGA-EI-6917-01 6 87964944 87964944 C T ZNF292 Missense_Mutation p.R533W 0.21 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 6 87967597 87967597 G A ZNF292 Missense_Mutation p.G1417E 0.29 tolerated(0.09) possibly_damaging(0.616) TCGA-EI-6917-01 6 88385308 88385308 A G AKIRIN2 3'UTR 0.25 TCGA-EI-6917-01 6 89891746 89891746 G A GABRR1 Missense_Mutation p.T276M 0.25 tolerated(0.05) probably_damaging(1) TCGA-EI-6917-01 6 90090009 90090009 G A RRAGD Silent p.F174F 0.49 TCGA-EI-6917-01 6 90366475 90366475 C A MDN1 Nonsense_Mutation p.E5077* 0.16 TCGA-EI-6917-01 6 90377853 90377853 T G MDN1 Missense_Mutation p.K4658N 0.32 possibly_damaging(0.719) TCGA-EI-6917-01 6 90405414 90405414 G A MDN1 Silent p.L3227L 0.16 TCGA-EI-6917-01 6 90410000 90410000 A C MDN1 Missense_Mutation p.N2884K 0.22 benign(0.005) TCGA-EI-6917-01 6 90428878 90428878 G A MDN1 Missense_Mutation p.R2012C 0.24 possibly_damaging(0.513) TCGA-EI-6917-01 6 90450077 90450077 G A MDN1 Missense_Mutation p.S1490F 0.29 possibly_damaging(0.905) TCGA-EI-6917-01 6 90500023 90500023 G A MDN1 Missense_Mutation p.A318V 0.20 possibly_damaging(0.537) TCGA-EI-6917-01 6 93979282 93979282 G A EPHA7 Missense_Mutation p.R516W 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 6 94120633 94120633 C T EPHA7 Missense_Mutation p.E140K 0.18 tolerated(0.11) probably_damaging(0.993) TCGA-EI-6917-01 6 96651708 96651708 T C FUT9 Missense_Mutation p.V226A 0.30 deleterious(0.01) benign(0.063) TCGA-EI-6917-01 6 96651712 96651712 T C FUT9 Silent p.N227N 0.30 TCGA-EI-6917-01 6 96655633 96655633 C T FUT9 3'UTR 0.21 TCGA-EI-6917-01 6 96657069 96657069 G A FUT9 3'UTR 0.47 TCGA-EI-6917-01 6 96661353 96661353 T C FUT9 3'UTR 0.25 TCGA-EI-6917-01 6 97063714 97063714 C T FHL5 3'UTR 0.31 TCGA-EI-6917-01 6 97580607 97580607 C A KLHL32 Missense_Mutation p.P562H 0.22 tolerated(0.16) probably_damaging(0.999) TCGA-EI-6917-01 6 97730348 97730348 C A MMS22L Missense_Mutation p.E2D 0.24 tolerated_low_confidence(1) benign(0.002) TCGA-EI-6917-01 6 9896955 9896955 G T OFCC1 Intron 0.47 TCGA-EI-6917-01 6 99285572 99285572 C T POU3F2 3'UTR 0.20 TCGA-EI-6917-01 6 99285696 99285696 T G POU3F2 3'UTR 0.26 TCGA-EI-6917-01 6 99322017 99322017 A G FBXL4 3'UTR 0.41 TCGA-EI-6917-01 6 99322207 99322207 C A FBXL4 Nonsense_Mutation p.E605* 0.23 TCGA-EI-6917-01 6 99328494 99328494 C A FBXL4 Missense_Mutation p.A442S 0.18 tolerated(0.44) benign(0.025) TCGA-EI-6917-01 6 99347172 99347172 C T FBXL4 Missense_Mutation p.R430Q 0.16 tolerated(0.09) probably_damaging(0.983) TCGA-EI-6917-01 6 99374572 99374572 C T FBXL4 Missense_Mutation p.R98Q 0.20 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 6 99856112 99856112 G A PNISR Missense_Mutation p.R237C 0.14 tolerated(0.06) benign(0.246) TCGA-EI-6917-01 7 100028968 100028968 C T MEPCE Missense_Mutation p.R443W 0.33 tolerated(0.06) possibly_damaging(0.513) TCGA-EI-6917-01 7 100187869 100187869 G A FBXO24 Missense_Mutation p.E109K 0.25 tolerated_low_confidence(0.06) benign(0) TCGA-EI-6917-01 7 100210522 100210522 C T MOSPD3 Silent p.V36V 0.25 TCGA-EI-6917-01 7 100350081 100350081 G T ZAN Nonsense_Mutation p.E785* 0.22 TCGA-EI-6917-01 7 100373386 100373386 C T ZAN Silent p.I2040I 0.26 TCGA-EI-6917-01 7 100456715 100456715 C T SLC12A9 Silent p.I303I 0.22 TCGA-EI-6917-01 7 100486382 100486382 C T UFSP1 3'UTR 0.26 TCGA-EI-6917-01 7 100961434 100961434 G A RABL5 Silent p.F59F 0.26 TCGA-EI-6917-01 7 101256662 101256662 G T MYL10 3'UTR 0.23 TCGA-EI-6917-01 7 101559470 101559470 G A CUX1 Missense_Mutation p.E47K 0.25 deleterious(0) unknown(0) TCGA-EI-6917-01 7 102136943 102136943 G T RASA4B Missense_Mutation p.L327I 0.28 deleterious(0.04) probably_damaging(0.994) TCGA-EI-6917-01 7 1024946 1024946 C T CYP2W1 Missense_Mutation p.S211F 0.26 deleterious(0.03) probably_damaging(0.958) TCGA-EI-6917-01 7 102574332 102574332 G A LRRC17 5'UTR 0.47 TCGA-EI-6917-01 7 102575014 102575014 A G LRRC17 Silent p.E218E 0.24 TCGA-EI-6917-01 7 102733097 102733097 G A ARMC10 Silent p.T234T 0.27 TCGA-EI-6917-01 7 102957388 102957388 T C DNAJC2 Missense_Mutation p.N439S 0.26 tolerated(0.76) benign(0) TCGA-EI-6917-01 7 102957436 102957436 C A DNAJC2 Missense_Mutation p.R423I 0.26 deleterious(0.02) benign(0.265) TCGA-EI-6917-01 7 103006538 103006538 C T PSMC2 Missense_Mutation p.R258C 0.14 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 103008218 103008218 G A PSMC2 Missense_Mutation p.R369K 0.16 tolerated(0.06) probably_damaging(0.986) TCGA-EI-6917-01 7 103032106 103032106 C T SLC26A5 Missense_Mutation p.R399Q 0.19 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 7 103185575 103185575 G A RELN Silent p.F2173F 0.10 TCGA-EI-6917-01 7 103214697 103214697 G A RELN Silent p.F1451F 0.17 TCGA-EI-6917-01 7 103234185 103234185 G A RELN Nonsense_Mutation p.R1286* 0.22 TCGA-EI-6917-01 7 103275891 103275891 G T RELN Missense_Mutation p.L816I 0.28 tolerated(0.23) benign(0.437) TCGA-EI-6917-01 7 103290799 103290799 C T RELN Missense_Mutation p.A642T 0.21 tolerated(0.23) probably_damaging(0.995) TCGA-EI-6917-01 7 103341439 103341439 G A RELN Missense_Mutation p.R274C 0.40 deleterious(0.01) possibly_damaging(0.549) TCGA-EI-6917-01 7 103363607 103363607 G T RELN Missense_Mutation p.S262Y 0.25 tolerated(0.05) benign(0.143) TCGA-EI-6917-01 7 104703804 104703804 A C KMT2E Missense_Mutation p.N65H 0.14 deleterious(0) possibly_damaging(0.703) TCGA-EI-6917-01 7 105624719 105624719 G A CDHR3 Missense_Mutation p.R166Q 0.22 tolerated(0.57) benign(0.002) TCGA-EI-6917-01 7 105664906 105664906 G A CDHR3 Missense_Mutation p.G719D 0.23 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 7 105669022 105669022 C T CDHR3 Silent p.V766V 0.18 TCGA-EI-6917-01 7 106509078 106509078 G A PIK3CG Missense_Mutation p.D358N 0.29 tolerated(1) benign(0) TCGA-EI-6917-01 7 106526602 106526602 C T PIK3CG Silent p.F965F 0.29 TCGA-EI-6917-01 7 106545797 106545797 C A PIK3CG Missense_Mutation p.L1092I 0.25 tolerated(0.2) possibly_damaging(0.576) TCGA-EI-6917-01 7 106793630 106793630 A G PRKAR2B Silent p.E284E 0.13 TCGA-EI-6917-01 7 107217019 107217019 C T DUS4L Missense_Mutation p.R230W 0.27 deleterious(0) possibly_damaging(0.67) TCGA-EI-6917-01 7 107221251 107221251 C A BCAP29 Missense_Mutation p.L12I 0.27 deleterious(0) probably_damaging(0.972) TCGA-EI-6917-01 7 107303845 107303845 C T SLC26A4 Missense_Mutation p.S90L 0.23 deleterious(0) probably_damaging(0.961) TCGA-EI-6917-01 7 107341589 107341589 C T SLC26A4 Missense_Mutation p.A584V 0.19 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 107671311 107671311 G A LAMB4 Silent p.H1644H 0.26 TCGA-EI-6917-01 7 107823349 107823349 C T NRCAM Missense_Mutation p.E774K 0.15 deleterious(0) benign(0.415) TCGA-EI-6917-01 7 107836210 107836210 G A NRCAM Silent p.I486I 0.24 TCGA-EI-6917-01 7 108213751 108213751 G A DNAJB9 Missense_Mutation p.R209Q 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-EI-6917-01 7 110526659 110526659 G T IMMP2L Missense_Mutation p.S133Y 0.34 tolerated(0.71) benign(0.002) TCGA-EI-6917-01 7 110763560 110763560 C T LRRN3 Silent p.Y244Y 0.28 TCGA-EI-6917-01 7 110763990 110763990 T A LRRN3 Missense_Mutation p.F388I 0.17 deleterious(0.05) possibly_damaging(0.49) TCGA-EI-6917-01 7 111400303 111400303 G A DOCK4 Missense_Mutation p.P1357S 0.25 deleterious(0.01) probably_damaging(0.979) TCGA-EI-6917-01 7 112555380 112555380 G A C7orf60 Missense_Mutation p.R95C 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 112724885 112724885 G T GPR85 5'UTR 0.35 TCGA-EI-6917-01 7 1133316 1133316 G A GPER1 3'UTR 0.37 TCGA-EI-6917-01 7 113519555 113519555 C A PPP1R3A Missense_Mutation p.R531I 0.21 tolerated(0.07) benign(0.021) TCGA-EI-6917-01 7 114292290 114292290 G A FOXP2 Missense_Mutation p.R401Q 0.25 deleterious(0.02) unknown(0) TCGA-EI-6917-01 7 114302163 114302163 G A FOXP2 Missense_Mutation p.R589Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 7 114619773 114619773 G A MDFIC Missense_Mutation p.D253N 0.20 tolerated(0.15) benign(0.317) TCGA-EI-6917-01 7 115874657 115874657 G A TES Missense_Mutation p.E33K 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-EI-6917-01 7 116955155 116955155 C A WNT2 Missense_Mutation p.M186I 0.22 deleterious(0) probably_damaging(0.977) TCGA-EI-6917-01 7 117020072 117020072 T G ASZ1 Missense_Mutation p.K325N 0.16 deleterious(0) probably_damaging(0.948) TCGA-EI-6917-01 7 117066953 117066953 C A ASZ1 Nonsense_Mutation p.E48* 0.27 TCGA-EI-6917-01 7 117230426 117230426 G A CFTR Missense_Mutation p.D567N 0.20 deleterious(0.01) benign(0.343) TCGA-EI-6917-01 7 117431433 117431433 G T CTTNBP2 Nonsense_Mutation p.S606* 0.27 TCGA-EI-6917-01 7 117431815 117431815 G A CTTNBP2 Missense_Mutation p.R479C 0.19 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 7 120629709 120629709 C T CPED1 Nonsense_Mutation p.R12* 0.29 TCGA-EI-6917-01 7 120901717 120901717 G A CPED1 Intron 0.23 TCGA-EI-6917-01 7 120935692 120935692 A G CPED1 Missense_Mutation p.K1023E 0.28 tolerated(0.32) benign(0.001) TCGA-EI-6917-01 7 121608181 121608181 A G PTPRZ1 Missense_Mutation p.T101A 0.26 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 7 121616887 121616887 G A PTPRZ1 Missense_Mutation p.E201K 0.23 tolerated(0.36) possibly_damaging(0.555) TCGA-EI-6917-01 7 121652613 121652613 G T PTPRZ1 Missense_Mutation p.E1171D 0.16 tolerated_low_confidence(0.06) benign(0.036) TCGA-EI-6917-01 7 121653537 121653537 G T PTPRZ1 Missense_Mutation p.E1479D 0.23 deleterious_low_confidence(0.03) benign(0.002) TCGA-EI-6917-01 7 121693965 121693965 G A PTPRZ1 Missense_Mutation p.G2085D 0.21 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 121769459 121769459 C T AASS Missense_Mutation p.A115T 0.29 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 7 121773596 121773596 G A AASS Missense_Mutation p.S62L 0.33 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 7 121773682 121773682 C A AASS Silent p.V33V 0.20 TCGA-EI-6917-01 7 121943363 121943363 G T FEZF1 Silent p.V268V 0.25 TCGA-EI-6917-01 7 121943791 121943791 G A FEZF1 Missense_Mutation p.A234V 0.37 tolerated(0.12) possibly_damaging(0.492) TCGA-EI-6917-01 7 122131428 122131428 G A CADPS2 Missense_Mutation p.S530F 0.25 deleterious(0.01) possibly_damaging(0.707) TCGA-EI-6917-01 7 122377023 122377023 G A CADPS2 Missense_Mutation p.R147W 0.21 deleterious(0) possibly_damaging(0.776) TCGA-EI-6917-01 7 122755559 122755559 A C SLC13A1 3'UTR 0.35 TCGA-EI-6917-01 7 123276904 123276904 C T ASB15 Nonsense_Mutation p.R546* 0.24 TCGA-EI-6917-01 7 123302465 123302465 C T LMOD2 Silent p.V275V 0.42 TCGA-EI-6917-01 7 123508956 123508956 G A HYAL4 Missense_Mutation p.R210Q 0.18 deleterious(0) probably_damaging(0.98) TCGA-EI-6917-01 7 123509048 123509048 G A HYAL4 Missense_Mutation p.E241K 0.37 deleterious(0) possibly_damaging(0.881) TCGA-EI-6917-01 7 123594108 123594108 G T SPAM1 Missense_Mutation p.D162Y 0.22 deleterious(0) probably_damaging(0.912) TCGA-EI-6917-01 7 123671893 123671893 T G TMEM229A 3'UTR 0.25 TCGA-EI-6917-01 7 12414848 12414848 C A VWDE Nonsense_Mutation p.E344* 0.28 TCGA-EI-6917-01 7 124387301 124387301 C T GPR37 Missense_Mutation p.E374K 0.27 tolerated(0.06) probably_damaging(0.971) TCGA-EI-6917-01 7 126409978 126409978 C T GRM8 Missense_Mutation p.R433Q 0.21 tolerated(0.53) benign(0.01) TCGA-EI-6917-01 7 126542691 126542691 C T GRM8 Missense_Mutation p.R354Q 0.28 tolerated(0.17) possibly_damaging(0.794) TCGA-EI-6917-01 7 127224614 127224614 C A GCC1 Missense_Mutation p.R208M 0.28 tolerated(0.1) benign(0.073) TCGA-EI-6917-01 7 127253566 127253566 G A PAX4 Missense_Mutation p.P187S 0.29 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 127970923 127970923 C A RBM28 Nonsense_Mutation p.E360* 0.39 TCGA-EI-6917-01 7 128000017 128000017 C T PRRT4 Missense_Mutation p.G10E 0.17 deleterious_low_confidence(0.05) unknown(0) TCGA-EI-6917-01 7 128524148 128524148 C T KCP RNA 0.41 TCGA-EI-6917-01 7 129474754 129474754 C A UBE2H 3'UTR 0.30 TCGA-EI-6917-01 7 129662345 129662345 G T ZC3HC1 Missense_Mutation p.F418L 0.24 tolerated(0.24) benign(0.036) TCGA-EI-6917-01 7 130417986 130417986 C T KLF14 Missense_Mutation p.R292Q 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.884) TCGA-EI-6917-01 7 131060183 131060183 G T MKLN1 Missense_Mutation p.E33D 0.22 tolerated(0.15) benign(0.046) TCGA-EI-6917-01 7 131073717 131073717 G A MKLN1 Missense_Mutation p.R129Q 0.29 tolerated(0.17) benign(0.271) TCGA-EI-6917-01 7 131815299 131815299 C T PLXNA4 Missense_Mutation p.G1875E 0.29 deleterious(0.01) benign(0.08) TCGA-EI-6917-01 7 131853284 131853284 G A PLXNA4 Silent p.F1355F 0.43 TCGA-EI-6917-01 7 131870090 131870090 G A PLXNA4 Silent p.I1042I 0.22 TCGA-EI-6917-01 7 132709325 132709325 C A CHCHD3 Nonsense_Mutation p.E78* 0.23 TCGA-EI-6917-01 7 132959817 132959817 G A EXOC4 Missense_Mutation p.R56H 0.09 tolerated(0.21) benign(0.025) TCGA-EI-6917-01 7 132959910 132959910 G A EXOC4 Missense_Mutation p.R87Q 0.24 tolerated(0.06) probably_damaging(0.997) TCGA-EI-6917-01 7 132973729 132973729 G A EXOC4 Silent p.E110E 0.13 TCGA-EI-6917-01 7 133164808 133164808 G A EXOC4 Missense_Mutation p.E445K 0.24 deleterious(0.01) benign(0.079) TCGA-EI-6917-01 7 134625934 134625934 C T CALD1 Missense_Mutation p.S493L 0.29 deleterious(0.02) unknown(0) TCGA-EI-6917-01 7 134722291 134722291 G A AGBL3 Missense_Mutation p.R487Q 0.42 tolerated(0.14) benign(0.304) TCGA-EI-6917-01 7 134916787 134916787 G T STRA8 Missense_Mutation p.W19C 0.29 tolerated_low_confidence(0.18) benign(0) TCGA-EI-6917-01 7 135261743 135261743 G A NUP205 Missense_Mutation p.R172H 0.29 deleterious(0.04) probably_damaging(0.946) TCGA-EI-6917-01 7 135277809 135277809 G A NUP205 Missense_Mutation p.E567K 0.25 tolerated(0.35) possibly_damaging(0.455) TCGA-EI-6917-01 7 137080353 137080353 C T DGKI Silent p.T1024T 0.26 TCGA-EI-6917-01 7 137151664 137151664 C T DGKI Intron 0.19 TCGA-EI-6917-01 7 138333842 138333842 G A SVOPL Missense_Mutation p.A192V 0.14 deleterious(0) probably_damaging(0.948) TCGA-EI-6917-01 7 138363224 138363224 G A SVOPL Silent p.F43F 0.25 TCGA-EI-6917-01 7 138603489 138603489 C T KIAA1549 Missense_Mutation p.D295N 0.35 tolerated(0.23) benign(0.001) TCGA-EI-6917-01 7 138824642 138824642 G A TTC26 Missense_Mutation p.E81K 0.27 tolerated(0.56) benign(0.004) TCGA-EI-6917-01 7 138827014 138827014 G A TTC26 Missense_Mutation p.R121Q 0.16 tolerated(0.65) benign(0.002) TCGA-EI-6917-01 7 139221066 139221066 C T CLEC2L Silent p.F79F 0.34 TCGA-EI-6917-01 7 14027785 14027785 C A ETV1 Missense_Mutation p.R20I 0.24 tolerated(0.06) benign(0.328) TCGA-EI-6917-01 7 140476786 140476786 A C BRAF Missense_Mutation p.H540Q 0.34 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 141430227 141430227 G T WEE2 3'UTR 0.17 TCGA-EI-6917-01 7 141629835 141629835 C A CLEC5A 3'UTR 0.19 TCGA-EI-6917-01 7 141629870 141629870 T G CLEC5A 3'UTR 0.28 TCGA-EI-6917-01 7 141673045 141673045 G T TAS2R38 Missense_Mutation p.L149I 0.17 tolerated(0.12) benign(0.065) TCGA-EI-6917-01 7 141766457 141766457 C T MGAM Intron 0.67 TCGA-EI-6917-01 7 141805625 141805625 C T MGAM Silent p.I1836I 0.25 TCGA-EI-6917-01 7 142622490 142622490 T G TRPV5 Intron 0.23 TCGA-EI-6917-01 7 142649724 142649724 C T KEL Missense_Mutation p.D359N 0.36 tolerated(0.17) benign(0.049) TCGA-EI-6917-01 7 142832288 142832288 C T PIP Missense_Mutation p.R33W 0.33 tolerated(0.1) possibly_damaging(0.842) TCGA-EI-6917-01 7 142989560 142989560 G A CASP2 Silent p.P131P 0.31 TCGA-EI-6917-01 7 143141092 143141092 G A TAS2R60 Missense_Mutation p.D183N 0.21 tolerated(1) benign(0) TCGA-EI-6917-01 7 143270015 143270015 G A CTAGE15 Missense_Mutation p.E369K 0.19 deleterious(0.02) possibly_damaging(0.477) TCGA-EI-6917-01 7 143453434 143453434 G T CTAGE6 Missense_Mutation p.L440I 0.16 deleterious(0.01) benign(0.331) TCGA-EI-6917-01 7 143748198 143748198 G A OR2A5 Missense_Mutation p.R235K 0.37 tolerated(0.31) benign(0.042) TCGA-EI-6917-01 7 143826220 143826220 G T OR2A14 Missense_Mutation p.K5N 0.26 deleterious(0) benign(0.001) TCGA-EI-6917-01 7 144015545 144015545 G A OR2A1 Missense_Mutation p.E110K 0.14 deleterious(0.01) possibly_damaging(0.648) TCGA-EI-6917-01 7 147092702 147092702 T C CNTNAP2 Silent p.G500G 0.33 TCGA-EI-6917-01 7 148454210 148454210 G A CUL1 Missense_Mutation p.E151K 0.21 deleterious(0.04) benign(0.258) TCGA-EI-6917-01 7 148544373 148544373 C T EZH2 Silent p.K6K 0.38 TCGA-EI-6917-01 7 148876463 148876463 G A ZNF398 Missense_Mutation p.R500H 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-EI-6917-01 7 148876473 148876473 G T ZNF398 Missense_Mutation p.M503I 0.22 tolerated(0.2) benign(0.111) TCGA-EI-6917-01 7 148950766 148950766 G A ZNF212 Missense_Mutation p.E250K 0.37 tolerated(0.39) benign(0.003) TCGA-EI-6917-01 7 149191364 149191364 C T ZNF746 Silent p.E85E 0.30 TCGA-EI-6917-01 7 149430489 149430489 C T KRBA1 Missense_Mutation p.R815W 0.39 tolerated(0.19) benign(0.397) TCGA-EI-6917-01 7 149476726 149476726 C T SSPO RNA 0.31 TCGA-EI-6917-01 7 149513005 149513005 C A SSPO RNA 0.31 TCGA-EI-6917-01 7 149513076 149513076 C T SSPO RNA 0.16 TCGA-EI-6917-01 7 149983494 149983494 C T ACTR3C Missense_Mutation p.E145K 0.27 tolerated(0.08) possibly_damaging(0.54) TCGA-EI-6917-01 7 150071013 150071013 G T REPIN1 3'Flank 0.26 TCGA-EI-6917-01 7 150174508 150174508 G A GIMAP8 Silent p.A546A 0.48 TCGA-EI-6917-01 7 150217370 150217370 G A GIMAP7 Missense_Mutation p.R103H 0.38 deleterious(0.04) possibly_damaging(0.458) TCGA-EI-6917-01 7 150490683 150490683 G A TMEM176B Silent p.I107I 0.28 TCGA-EI-6917-01 7 150649889 150649889 C T KCNH2 Missense_Mutation p.R394H 0.39 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 150769142 150769142 C T SLC4A2 Silent p.F818F 0.28 TCGA-EI-6917-01 7 150845978 150845978 G A GBX1 Missense_Mutation p.R264C 0.33 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 150939252 150939252 G T SMARCD3 Missense_Mutation p.L216I 0.17 tolerated(0.15) benign(0.263) TCGA-EI-6917-01 7 150939255 150939255 C A SMARCD3 Missense_Mutation p.D215Y 0.16 deleterious(0) possibly_damaging(0.886) TCGA-EI-6917-01 7 150945607 150945607 C T SMARCD3 Silent p.T14T 0.29 TCGA-EI-6917-01 7 151064977 151064977 C A NUB1 Missense_Mutation p.L364I 0.36 deleterious(0.01) probably_damaging(0.968) TCGA-EI-6917-01 7 154002608 154002608 C T DPP6 Intron 0.29 TCGA-EI-6917-01 7 154684166 154684166 G A DPP6 Silent p.A858A 0.30 TCGA-EI-6917-01 7 155251081 155251081 G T EN2 Missense_Mutation p.E3D 0.33 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-EI-6917-01 7 155473489 155473489 G A RBM33 Missense_Mutation p.E152K 0.23 deleterious(0.01) possibly_damaging(0.734) TCGA-EI-6917-01 7 155499760 155499760 G A RBM33 Missense_Mutation p.V316M 0.41 tolerated(0.6) benign(0.283) TCGA-EI-6917-01 7 156447397 156447397 C T RNF32 Silent p.F134F 0.19 TCGA-EI-6917-01 7 156480729 156480729 G A LMBR1 Missense_Mutation p.A461V 0.19 deleterious(0.04) probably_damaging(0.996) TCGA-EI-6917-01 7 156754848 156754848 C T NOM1 Missense_Mutation p.R546W 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 157341694 157341694 G A PTPRN2 Silent p.I974I 0.28 TCGA-EI-6917-01 7 158486111 158486111 T G NCAPG2 Silent p.R53R 0.22 TCGA-EI-6917-01 7 158486123 158486123 C T NCAPG2 Missense_Mutation p.E49K 0.24 tolerated(0.75) benign(0.035) TCGA-EI-6917-01 7 158672648 158672648 G A WDR60 Missense_Mutation p.A283T 0.27 tolerated(0.61) benign(0.012) TCGA-EI-6917-01 7 16131362 16131362 C A ISPD Missense_Mutation p.K438N 0.19 deleterious(0) possibly_damaging(0.701) TCGA-EI-6917-01 7 16505334 16505334 C A SOSTDC1 5'UTR 0.33 TCGA-EI-6917-01 7 16901054 16901054 C A AGR3 Missense_Mutation p.K107N 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-EI-6917-01 7 16918169 16918169 T G AGR3 Missense_Mutation p.K25T 0.15 tolerated(0.15) benign(0.002) TCGA-EI-6917-01 7 17378649 17378649 G A AHR Silent p.T400T 0.40 TCGA-EI-6917-01 7 1785554 1785554 G A ELFN1 Missense_Mutation p.R441H 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 18687412 18687412 C T HDAC9 Missense_Mutation p.S347L 0.20 tolerated(0.19) possibly_damaging(0.766) TCGA-EI-6917-01 7 18687413 18687413 G A HDAC9 Silent p.S347S 0.17 TCGA-EI-6917-01 7 20199485 20199485 C T MACC1 Missense_Mutation p.D167N 0.20 tolerated(0.05) probably_damaging(0.998) TCGA-EI-6917-01 7 20662955 20662955 G A ABCB5 Missense_Mutation p.R16K 0.27 tolerated(1) benign(0.002) TCGA-EI-6917-01 7 20682949 20682949 G A ABCB5 Missense_Mutation p.G153S 0.24 tolerated(0.35) benign(0.009) TCGA-EI-6917-01 7 20824270 20824270 G A SP8 Missense_Mutation p.S389L 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 21468324 21468324 G A SP4 Missense_Mutation p.A13T 0.23 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-EI-6917-01 7 21516785 21516785 G A SP4 Silent p.T589T 0.29 TCGA-EI-6917-01 7 21695578 21695578 C T DNAH11 Silent p.A1696A 0.21 TCGA-EI-6917-01 7 21747336 21747336 G A DNAH11 Missense_Mutation p.R2196Q 0.18 benign(0.013) TCGA-EI-6917-01 7 21818582 21818582 G A DNAH11 Missense_Mutation p.D3122N 0.17 benign(0.104) TCGA-EI-6917-01 7 21856193 21856193 G A DNAH11 Missense_Mutation p.E3488K 0.18 possibly_damaging(0.908) TCGA-EI-6917-01 7 22184740 22184740 A G RAPGEF5 Missense_Mutation p.V550A 0.32 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 7 22766970 22766970 T C IL6 Intron 0.29 TCGA-EI-6917-01 7 2279263 2279263 C T FTSJ2 Missense_Mutation p.A30T 0.28 tolerated(0.3) benign(0.021) TCGA-EI-6917-01 7 22862367 22862367 C T TOMM7 Missense_Mutation p.R11K 0.22 tolerated(0.17) possibly_damaging(0.704) TCGA-EI-6917-01 7 23757123 23757123 C A STK31 Silent p.I58I 0.30 TCGA-EI-6917-01 7 24839756 24839756 C T OSBPL3 3'UTR 0.17 TCGA-EI-6917-01 7 25208007 25208007 G T C7orf31 Missense_Mutation p.P71Q 0.29 tolerated(0.06) probably_damaging(1) TCGA-EI-6917-01 7 27134245 27134245 C T HOXA1 Silent p.K274K 0.22 TCGA-EI-6917-01 7 2740267 2740267 G A AMZ1 Missense_Mutation p.R61H 0.31 tolerated(1) benign(0.001) TCGA-EI-6917-01 7 29544425 29544425 G A CHN2 Missense_Mutation p.A327T 0.26 deleterious(0.05) benign(0.312) TCGA-EI-6917-01 7 29690898 29690898 G A ZNRF2P2 RNA 0.73 TCGA-EI-6917-01 7 29966080 29966080 G A SCRN1 Silent p.I378I 0.23 TCGA-EI-6917-01 7 30008545 30008545 C T SCRN1 Missense_Mutation p.E67K 0.17 tolerated(0.49) benign(0.419) TCGA-EI-6917-01 7 31015394 31015394 G T GHRHR Silent p.V295V 0.29 TCGA-EI-6917-01 7 31146219 31146219 G T ADCYAP1R1 Missense_Mutation p.G471V 0.25 tolerated(0.11) probably_damaging(0.963) TCGA-EI-6917-01 7 31378549 31378549 C T NEUROD6 Missense_Mutation p.D112N 0.32 tolerated(0.99) probably_damaging(0.948) TCGA-EI-6917-01 7 31617627 31617627 G A CCDC129 Missense_Mutation p.R276Q 0.26 tolerated(0.65) benign(0.043) TCGA-EI-6917-01 7 31736690 31736690 G T PPP1R17 Missense_Mutation p.R116I 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EI-6917-01 7 34818077 34818077 C A NPSR1 Missense_Mutation p.S95Y 0.14 tolerated(0.46) benign(0.017) TCGA-EI-6917-01 7 36327313 36327313 G T EEPD1 Missense_Mutation p.E414D 0.17 tolerated(0.38) benign(0.001) TCGA-EI-6917-01 7 36373756 36373756 G A KIAA0895 Nonsense_Mutation p.R339* 0.25 TCGA-EI-6917-01 7 36456703 36456703 G A ANLN Missense_Mutation p.E513K 0.26 tolerated(0.36) benign(0.001) TCGA-EI-6917-01 7 37252981 37252981 G T ELMO1 Missense_Mutation p.L305M 0.44 deleterious(0.02) probably_damaging(0.958) TCGA-EI-6917-01 7 37923984 37923984 A G NME8 Silent p.A358A 0.24 TCGA-EI-6917-01 7 38279659 38279659 C A TRGC2 Missense_Mutation p.R179I 0.23 deleterious(0.01) possibly_damaging(0.702) TCGA-EI-6917-01 7 38424386 38424386 G A AMPH 3'UTR 0.21 TCGA-EI-6917-01 7 38574564 38574564 G A AMPH Silent p.F39F 0.23 TCGA-EI-6917-01 7 38725306 38725306 G A FAM183B Silent p.V100V 0.37 TCGA-EI-6917-01 7 39446284 39446284 C T POU6F2 Missense_Mutation p.A324V 0.19 deleterious(0.04) unknown(0) TCGA-EI-6917-01 7 40134134 40134134 G A CDK13 Missense_Mutation p.R1365Q 0.26 deleterious_low_confidence(0.01) benign(0.04) TCGA-EI-6917-01 7 40228169 40228169 G A SUGCT Missense_Mutation p.R108Q 0.26 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 40314210 40314210 A C SUGCT Missense_Mutation p.K232N 0.17 deleterious(0.04) probably_damaging(0.913) TCGA-EI-6917-01 7 4189019 4189019 C T SDK1 Nonsense_Mutation p.R1517* 0.50 TCGA-EI-6917-01 7 42004025 42004025 G A GLI3 Missense_Mutation p.A1549V 0.23 tolerated(0.06) benign(0.004) TCGA-EI-6917-01 7 42012048 42012048 G A GLI3 Missense_Mutation p.S664L 0.18 deleterious(0.02) probably_damaging(0.995) TCGA-EI-6917-01 7 42961409 42961409 C A PSMA2 Intron 0.25 TCGA-EI-6917-01 7 43485084 43485084 C T HECW1 Silent p.D771D 0.28 TCGA-EI-6917-01 7 43581522 43581522 G A HECW1 Silent p.L1391L 0.21 TCGA-EI-6917-01 7 43916154 43916154 C T URGCP 3'UTR 0.17 TCGA-EI-6917-01 7 44146369 44146369 G A AEBP1 Missense_Mutation p.A160T 0.33 deleterious_low_confidence(0.05) unknown(0) TCGA-EI-6917-01 7 44148893 44148893 G A AEBP1 Missense_Mutation p.R368Q 0.25 tolerated_low_confidence(0.32) benign(0.005) TCGA-EI-6917-01 7 44247014 44247014 G A YKT6 Missense_Mutation p.D106N 0.29 tolerated(0.08) benign(0.004) TCGA-EI-6917-01 7 44706424 44706424 C A OGDH Missense_Mutation p.L203M 0.20 deleterious(0.03) possibly_damaging(0.83) TCGA-EI-6917-01 7 45109427 45109427 C T CCM2 Silent p.V225V 0.32 TCGA-EI-6917-01 7 45930257 45930257 G A IGFBP1 Missense_Mutation p.A154T 0.24 deleterious(0.02) possibly_damaging(0.846) TCGA-EI-6917-01 7 47408157 47408157 C T TNS3 Missense_Mutation p.D696N 0.29 deleterious(0) probably_damaging(0.992) TCGA-EI-6917-01 7 47479218 47479218 C T TNS3 Missense_Mutation p.G6E 0.12 tolerated(1) benign(0) TCGA-EI-6917-01 7 48311486 48311486 G T ABCA13 Missense_Mutation p.E741D 0.15 benign(0.051) TCGA-EI-6917-01 7 48312291 48312291 G A ABCA13 Missense_Mutation p.A1010T 0.23 benign(0.098) TCGA-EI-6917-01 7 48312568 48312568 C T ABCA13 Missense_Mutation p.S1102L 0.10 benign(0) TCGA-EI-6917-01 7 48316117 48316117 C A ABCA13 Missense_Mutation p.S2285Y 0.38 benign(0.243) TCGA-EI-6917-01 7 48317839 48317839 G A ABCA13 Missense_Mutation p.E2350K 0.19 benign(0.004) TCGA-EI-6917-01 7 48391886 48391886 G A ABCA13 Missense_Mutation p.R3497Q 0.27 probably_damaging(1) TCGA-EI-6917-01 7 48494867 48494867 G A ABCA13 Missense_Mutation p.E4267K 0.15 probably_damaging(0.909) TCGA-EI-6917-01 7 4899668 4899668 C T PAPOLB Missense_Mutation p.E591K 0.32 tolerated(0.37) possibly_damaging(0.679) TCGA-EI-6917-01 7 4900817 4900817 C T PAPOLB Missense_Mutation p.D208N 0.23 deleterious(0.04) benign(0.286) TCGA-EI-6917-01 7 50023076 50023076 C A ZPBP Nonsense_Mutation p.E275* 0.24 TCGA-EI-6917-01 7 5340232 5340232 C T SLC29A4 Silent p.F463F 0.27 TCGA-EI-6917-01 7 55236322 55236322 C A EGFR Intron 0.27 TCGA-EI-6917-01 7 55755586 55755586 G T RNU6-389P 3'Flank 0.32 TCGA-EI-6917-01 7 55912389 55912389 C T SEPT14 Silent p.S66S 0.22 TCGA-EI-6917-01 7 57188130 57188130 C T ZNF479 Missense_Mutation p.G331D 0.12 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 7 57529187 57529187 G T ZNF716 Missense_Mutation p.K340N 0.30 tolerated(0.09) benign(0.167) TCGA-EI-6917-01 7 5770435 5770435 G T RNF216 Missense_Mutation p.L379I 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 7 5925747 5925747 G A OCM 3'UTR 0.22 TCGA-EI-6917-01 7 6027165 6027165 C A PMS2 Nonsense_Mutation p.E411* 0.28 TCGA-EI-6917-01 7 63538457 63538457 G T ZNF727 Nonsense_Mutation p.E344* 0.29 TCGA-EI-6917-01 7 64168458 64168458 C A ZNF107 Missense_Mutation p.F592L 0.15 tolerated(0.52) possibly_damaging(0.483) TCGA-EI-6917-01 7 64388538 64388538 A G ZNF273 Missense_Mutation p.T278A 0.28 tolerated(0.05) benign(0.005) TCGA-EI-6917-01 7 64437182 64437182 C T ZNF117 3'UTR 0.38 TCGA-EI-6917-01 7 64438371 64438371 C A ZNF117 3'UTR 0.43 TCGA-EI-6917-01 7 64439395 64439395 C T ZNF117 Missense_Mutation p.R185K 0.33 tolerated(0.92) benign(0.029) TCGA-EI-6917-01 7 64439479 64439479 C A ZNF117 Missense_Mutation p.R157I 0.38 tolerated(0.33) benign(0.029) TCGA-EI-6917-01 7 64442464 64442464 C A ZNF117 5'UTR 0.23 TCGA-EI-6917-01 7 65599324 65599324 G T CRCP Nonsense_Mutation p.E68* 0.25 TCGA-EI-6917-01 7 6622957 6622957 G T ZDHHC4 Nonsense_Mutation p.E131* 0.26 TCGA-EI-6917-01 7 66240367 66240367 C T KCTD7 Silent p.V111V 0.24 TCGA-EI-6917-01 7 6731093 6731093 C T ZNF12 Missense_Mutation p.E494K 0.21 tolerated(0.09) probably_damaging(0.925) TCGA-EI-6917-01 7 69599557 69599557 C T AUTS2 Silent p.F220F 0.50 TCGA-EI-6917-01 7 70255988 70255988 G T AUTS2 3'UTR 0.31 TCGA-EI-6917-01 7 71275406 71275406 C T CALN1 Silent p.T191T 0.21 TCGA-EI-6917-01 7 72657540 72657540 C T GTF2IRD2P1 RNA 0.20 TCGA-EI-6917-01 7 72658689 72658689 C T GTF2IRD2P1 RNA 0.28 TCGA-EI-6917-01 7 73483023 73483023 G T ELN Missense_Mutation p.R723I 0.31 unknown(0) TCGA-EI-6917-01 7 73927201 73927201 C T GTF2IRD1 Silent p.V55V 0.24 TCGA-EI-6917-01 7 73953080 73953080 C A GTF2IRD1 Silent p.V538V 0.22 TCGA-EI-6917-01 7 7410370 7410370 C - COL28A1 Frame_Shift_Del p.E1018Kfs*6 0.09 TCGA-EI-6917-01 7 76883854 76883854 G T CCDC146 Nonsense_Mutation p.E161* 0.19 TCGA-EI-6917-01 7 76924217 76924217 G T CCDC146 3'UTR 0.31 TCGA-EI-6917-01 7 77240121 77240121 G T PTPN12 Nonsense_Mutation p.E268* 0.20 TCGA-EI-6917-01 7 77378788 77378788 A C RSBN1L Missense_Mutation p.K251Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 77398024 77398024 G A RSBN1L Missense_Mutation p.R510Q 0.31 tolerated(0.11) probably_damaging(0.98) TCGA-EI-6917-01 7 79082452 79082452 G A MAGI2 Missense_Mutation p.S62L 0.40 tolerated(0.05) benign(0.119) TCGA-EI-6917-01 7 80285936 80285936 C A CD36 Silent p.I67I 0.22 TCGA-EI-6917-01 7 8099790 8099790 C T GLCCI1 Missense_Mutation p.S293L 0.32 tolerated(0.15) possibly_damaging(0.889) TCGA-EI-6917-01 7 81381528 81381528 C T HGF Missense_Mutation p.R178Q 0.21 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 81593632 81593632 T C CACNA2D1 Missense_Mutation p.H873R 0.21 tolerated(0.4) benign(0.002) TCGA-EI-6917-01 7 82390007 82390007 G A PCLO Missense_Mutation p.S5079L 0.25 unknown(0) TCGA-EI-6917-01 7 82546026 82546026 C T PCLO Missense_Mutation p.R3759Q 0.26 unknown(0) TCGA-EI-6917-01 7 82579967 82579967 G A PCLO Missense_Mutation p.R3313W 0.29 unknown(0) TCGA-EI-6917-01 7 82582944 82582944 T - PCLO Frame_Shift_Del p.K2442Sfs*2 0.41 TCGA-EI-6917-01 7 82586082 82586082 G T PCLO Missense_Mutation p.S1396Y 0.18 unknown(0) TCGA-EI-6917-01 7 83025986 83025986 C A SEMA3E Nonsense_Mutation p.E476* 0.33 TCGA-EI-6917-01 7 84636142 84636142 C T SEMA3D Silent p.R628R 0.29 TCGA-EI-6917-01 7 86542364 86542364 C T KIAA1324L Missense_Mutation p.E630K 0.23 tolerated(0.64) benign(0.099) TCGA-EI-6917-01 7 86808987 86808987 C T DMTF1 Missense_Mutation p.R216C 0.16 deleterious(0) probably_damaging(0.987) TCGA-EI-6917-01 7 86824024 86824024 G T DMTF1 Nonsense_Mutation p.E685* 0.20 TCGA-EI-6917-01 7 86824065 86824065 C T DMTF1 Silent p.I698I 0.20 TCGA-EI-6917-01 7 86826042 86826042 C T TMEM243 Silent p.P89P 0.15 TCGA-EI-6917-01 7 86990745 86990745 C T CROT Missense_Mutation p.R122C 0.28 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 87041235 87041235 T C ABCB4 Silent p.G966G 0.28 TCGA-EI-6917-01 7 87092077 87092077 G A ABCB4 Missense_Mutation p.P95S 0.33 tolerated(0.62) benign(0.01) TCGA-EI-6917-01 7 87170746 87170746 C T ABCB1 Missense_Mutation p.R749Q 0.20 tolerated(0.23) benign(0.007) TCGA-EI-6917-01 7 87179797 87179797 C T ABCB1 Missense_Mutation p.R404Q 0.31 deleterious(0) probably_damaging(0.983) TCGA-EI-6917-01 7 87214880 87214880 G T ABCB1 Silent p.I78I 0.36 TCGA-EI-6917-01 7 87399954 87399954 C T RUNDC3B Silent p.S246S 0.20 TCGA-EI-6917-01 7 87476353 87476353 C T SLC25A40 Missense_Mutation p.R181Q 0.16 tolerated(0.64) benign(0.002) TCGA-EI-6917-01 7 87759747 87759747 G A ADAM22 Silent p.A266A 0.28 TCGA-EI-6917-01 7 87910282 87910282 G T STEAP4 Missense_Mutation p.S366Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 7 87912231 87912231 G A STEAP4 Missense_Mutation p.R237C 0.29 tolerated(0.07) benign(0.032) TCGA-EI-6917-01 7 88956691 88956691 C T ZNF804B Nonsense_Mutation p.R95* 0.18 TCGA-EI-6917-01 7 88963218 88963218 G A ZNF804B Missense_Mutation p.D308N 0.23 tolerated(0.22) benign(0.007) TCGA-EI-6917-01 7 89903322 89903322 A C C7orf63 Missense_Mutation p.K294N 0.20 tolerated(0.64) benign(0.283) TCGA-EI-6917-01 7 90895350 90895350 C T FZD1 Silent p.F385F 0.29 TCGA-EI-6917-01 7 91503023 91503023 C T MTERF Missense_Mutation p.R362Q 0.25 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 7 91503253 91503253 G T MTERF Silent p.S285S 0.24 TCGA-EI-6917-01 7 91630493 91630493 G A AKAP9 Missense_Mutation p.R421Q 0.20 probably_damaging(0.982) TCGA-EI-6917-01 7 91747893 91747893 C A CYP51A1 Nonsense_Mutation p.E375* 0.15 TCGA-EI-6917-01 7 91793054 91793054 G T LRRD1 Missense_Mutation p.S488Y 0.24 tolerated(0.44) benign(0.016) TCGA-EI-6917-01 7 92826831 92826831 G T HEPACAM2 Missense_Mutation p.L369I 0.23 deleterious(0.03) possibly_damaging(0.635) TCGA-EI-6917-01 7 92886773 92886773 G T CCDC132 Missense_Mutation p.R140I 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 7 92985294 92985294 G A CCDC132 Missense_Mutation p.D893N 0.20 tolerated(0.38) benign(0.142) TCGA-EI-6917-01 7 935032 935032 C T GET4 Silent p.S319S 0.24 TCGA-EI-6917-01 7 94034026 94034026 C A COL1A2 Missense_Mutation p.P116T 0.31 unknown(0) TCGA-EI-6917-01 7 94055313 94055313 C A COL1A2 Missense_Mutation p.P983T 0.23 unknown(0) TCGA-EI-6917-01 7 94230097 94230097 C A SGCE Nonsense_Mutation p.E300* 0.26 TCGA-EI-6917-01 7 94297959 94297959 G T PEG10 3'UTR 0.26 TCGA-EI-6917-01 7 94539496 94539496 G A PPP1R9A Missense_Mutation p.R24Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 94928407 94928407 C T PON1 Missense_Mutation p.R306Q 0.19 tolerated(0.13) benign(0.002) TCGA-EI-6917-01 7 95115466 95115466 A G ASB4 Silent p.K61K 0.29 TCGA-EI-6917-01 7 95439755 95439755 C T DYNC1I1 Missense_Mutation p.R54C 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 7 95665014 95665014 C T DYNC1I1 Silent p.F455F 0.28 TCGA-EI-6917-01 7 96637108 96637108 G A DLX6 Missense_Mutation p.E199K 0.44 deleterious(0.01) probably_damaging(0.996) TCGA-EI-6917-01 7 96653578 96653578 T C DLX5 Intron 0.27 TCGA-EI-6917-01 7 96653656 96653656 C T DLX5 Missense_Mutation p.D94N 0.12 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 7 98449096 98449096 C A TMEM130 Missense_Mutation p.E318D 0.24 deleterious(0.01) probably_damaging(0.987) TCGA-EI-6917-01 7 98957224 98957224 C T ARPC1A Silent p.F282F 0.29 TCGA-EI-6917-01 7 99084915 99084915 G T ZNF789 Missense_Mutation p.R361I 0.25 deleterious(0) probably_damaging(0.947) TCGA-EI-6917-01 7 99161638 99161638 G A ZNF655 Intron 0.25 TCGA-EI-6917-01 7 99445180 99445180 C T CYP3A43 Nonsense_Mutation p.R130* 0.17 TCGA-EI-6917-01 7 99473878 99473878 C T OR2AE1 Missense_Mutation p.R260K 0.25 tolerated(0.08) benign(0.198) TCGA-EI-6917-01 7 99474086 99474086 C T OR2AE1 Missense_Mutation p.D191N 0.56 tolerated(0.08) benign(0.135) TCGA-EI-6917-01 7 99526735 99526735 C T GJC3 Missense_Mutation p.R170H 0.20 tolerated(0.06) probably_damaging(0.993) TCGA-EI-6917-01 7 99662324 99662324 G A ZSCAN21 3'UTR 0.28 TCGA-EI-6917-01 7 99662548 99662548 G A ZSCAN21 3'UTR 0.24 TCGA-EI-6917-01 7 99757816 99757816 C T GAL3ST4 Missense_Mutation p.R399H 0.15 deleterious(0.02) benign(0.141) TCGA-EI-6917-01 7 99783910 99783910 G A STAG3 Missense_Mutation p.G142R 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 7 99802729 99802729 G A STAG3 Missense_Mutation p.R1018Q 0.28 deleterious(0) probably_damaging(0.978) TCGA-EI-6917-01 7 99818284 99818284 G A PVRIG Missense_Mutation p.R195Q 0.28 tolerated(0.19) benign(0.005) TCGA-EI-6917-01 8 100520086 100520086 C T VPS13B Nonsense_Mutation p.R1416* 0.19 TCGA-EI-6917-01 8 100829870 100829870 C T VPS13B Missense_Mutation p.R2759W 0.32 deleterious(0) possibly_damaging(0.689) TCGA-EI-6917-01 8 100904191 100904191 C T COX6C Missense_Mutation p.R20Q 0.20 tolerated(0.19) benign(0.034) TCGA-EI-6917-01 8 101016271 101016271 C T RGS22 Missense_Mutation p.R837Q 0.34 tolerated(0.46) benign(0.001) TCGA-EI-6917-01 8 101054125 101054125 T G RGS22 Missense_Mutation p.S615R 0.15 tolerated(0.26) benign(0.004) TCGA-EI-6917-01 8 101076056 101076056 C A RGS22 Nonsense_Mutation p.E314* 0.31 TCGA-EI-6917-01 8 101154194 101154194 C A FBXO43 Missense_Mutation p.K96N 0.44 tolerated(0.13) benign(0.003) TCGA-EI-6917-01 8 101624235 101624235 G A SNX31 Nonsense_Mutation p.R202* 0.14 TCGA-EI-6917-01 8 101629935 101629935 C A SNX31 Missense_Mutation p.K115N 0.34 deleterious(0.04) benign(0.197) TCGA-EI-6917-01 8 102570728 102570728 G T GRHL2 Silent p.V122V 0.26 TCGA-EI-6917-01 8 103237240 103237240 G A RRM2B Missense_Mutation p.R110C 0.27 deleterious_low_confidence(0.02) benign(0.44) TCGA-EI-6917-01 8 103307443 103307443 C T UBR5 Silent p.E1349E 0.19 TCGA-EI-6917-01 8 103663547 103663547 C T KLF10 Missense_Mutation p.G338D 0.18 deleterious(0.02) possibly_damaging(0.901) TCGA-EI-6917-01 8 103855903 103855903 G A AZIN1 5'UTR 0.38 TCGA-EI-6917-01 8 10396323 10396323 C A PRSS55 3'UTR 0.33 TCGA-EI-6917-01 8 104337567 104337567 G T FZD6 Missense_Mutation p.K411N 0.26 deleterious(0.04) probably_damaging(1) TCGA-EI-6917-01 8 104412553 104412553 C A SLC25A32 3'UTR 0.33 TCGA-EI-6917-01 8 10480118 10480118 C T RP1L1 Silent p.T198T 0.28 TCGA-EI-6917-01 8 104897828 104897828 G A RIMS2 Missense_Mutation p.R334Q 0.22 deleterious_low_confidence(0) benign(0.064) TCGA-EI-6917-01 8 105440211 105440211 G A DPYS Silent p.G363G 0.19 TCGA-EI-6917-01 8 10584026 10584026 T C SOX7 Missense_Mutation p.D182G 0.31 deleterious(0) benign(0.286) TCGA-EI-6917-01 8 106456594 106456594 G A ZFPM2 Missense_Mutation p.D96N 0.19 tolerated(0.07) benign(0.068) TCGA-EI-6917-01 8 107722883 107722883 G A OXR1 Missense_Mutation p.R554Q 0.24 deleterious(0.02) benign(0.06) TCGA-EI-6917-01 8 107781767 107781767 G A ABRA Missense_Mutation p.R218C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 8 10892735 10892735 G A XKR6 Intron 0.32 TCGA-EI-6917-01 8 110283308 110283308 C T NUDCD1 Missense_Mutation p.E409K 0.22 deleterious(0.01) possibly_damaging(0.562) TCGA-EI-6917-01 8 110463254 110463254 T G PKHD1L1 Missense_Mutation p.L2076V 0.12 tolerated(0.52) benign(0.002) TCGA-EI-6917-01 8 110476666 110476666 C T PKHD1L1 Silent p.G2535G 0.28 TCGA-EI-6917-01 8 113293531 113293531 C T CSMD3 Missense_Mutation p.R3127Q 0.28 tolerated(0.29) benign(0.041) TCGA-EI-6917-01 8 113326698 113326698 G T CSMD3 Missense_Mutation p.F2503L 0.24 deleterious(0.03) probably_damaging(0.959) TCGA-EI-6917-01 8 11406588 11406588 C T BLK Missense_Mutation p.P109S 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 114186078 114186078 G A CSMD3 Silent p.F194F 0.21 TCGA-EI-6917-01 8 116599806 116599806 G A TRPS1 Missense_Mutation p.R708C 0.36 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-EI-6917-01 8 117859771 117859771 C T RAD21 Missense_Mutation p.A622T 0.15 tolerated(0.12) probably_damaging(0.997) TCGA-EI-6917-01 8 117875449 117875449 C T RAD21 Missense_Mutation p.R65Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 8 117954928 117954928 G A AARD Silent p.A152A 0.32 TCGA-EI-6917-01 8 11831592 11831592 G A DEFB136 Missense_Mutation p.R31C 0.23 deleterious(0) probably_damaging(0.968) TCGA-EI-6917-01 8 119936933 119936933 G A TNFRSF11B Missense_Mutation p.R296C 0.27 tolerated(0.06) benign(0.01) TCGA-EI-6917-01 8 120795842 120795842 C A TAF2 Missense_Mutation p.D631Y 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 121015219 121015219 G A DEPTOR Missense_Mutation p.S265N 0.22 tolerated(0.25) benign(0.006) TCGA-EI-6917-01 8 121209180 121209180 G A COL14A1 Missense_Mutation p.R196Q 0.25 tolerated(0.98) benign(0.133) TCGA-EI-6917-01 8 121290768 121290768 A G COL14A1 Silent p.G1144G 0.18 TCGA-EI-6917-01 8 124138819 124138819 C T TBC1D31 Silent p.F592F 0.27 TCGA-EI-6917-01 8 124267872 124267872 G A ZHX1 Silent p.V105V 0.29 TCGA-EI-6917-01 8 124383491 124383491 A G ATAD2 Silent p.F208F 0.28 TCGA-EI-6917-01 8 124822685 124822685 G T FAM91A1 Intron 0.24 TCGA-EI-6917-01 8 125033865 125033865 G A FER1L6 Missense_Mutation p.E697K 0.27 tolerated(0.7) benign(0.006) TCGA-EI-6917-01 8 125072972 125072972 G A FER1L6 Intron 0.34 TCGA-EI-6917-01 8 125498632 125498632 G A RNF139 Missense_Mutation p.A248T 0.25 tolerated(0.38) benign(0.005) TCGA-EI-6917-01 8 125499265 125499265 G A RNF139 Missense_Mutation p.D459N 0.34 deleterious(0) probably_damaging(0.988) TCGA-EI-6917-01 8 125499376 125499376 C T RNF139 Missense_Mutation p.R496W 0.25 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 12586744 12586744 G A LONRF1 Nonsense_Mutation p.R596* 0.24 TCGA-EI-6917-01 8 126448541 126448541 G A TRIB1 Missense_Mutation p.R316H 0.28 deleterious(0.03) possibly_damaging(0.464) TCGA-EI-6917-01 8 128428811 128428811 C T POU5F1B Nonsense_Mutation p.R234* 0.25 TCGA-EI-6917-01 8 12879985 12879985 G T KIAA1456 3'UTR 0.22 TCGA-EI-6917-01 8 12882422 12882422 A T KIAA1456 3'UTR 0.27 TCGA-EI-6917-01 8 12946138 12946138 G A DLC1 Missense_Mutation p.R1384C 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-EI-6917-01 8 12957509 12957509 G A DLC1 Silent p.F779F 0.23 TCGA-EI-6917-01 8 130764132 130764132 C T GSDMC Missense_Mutation p.E298K 0.39 tolerated(0.77) benign(0.001) TCGA-EI-6917-01 8 131916033 131916033 G A ADCY8 Silent p.I632I 0.12 TCGA-EI-6917-01 8 132982784 132982784 C T EFR3A Silent p.F351F 0.28 TCGA-EI-6917-01 8 133076153 133076153 C T OC90 5'Flank 0.21 TCGA-EI-6917-01 8 133187832 133187832 G A KCNQ3 Silent p.I267I 0.25 TCGA-EI-6917-01 8 13356605 13356605 C T DLC1 Missense_Mutation p.A326T 0.25 tolerated_low_confidence(0.44) benign(0.004) TCGA-EI-6917-01 8 133899480 133899480 G A TG Silent p.T621T 0.24 TCGA-EI-6917-01 8 133931640 133931640 C T TG Silent p.S1466S 0.22 TCGA-EI-6917-01 8 133984097 133984097 C T TG Silent p.L2012L 0.20 TCGA-EI-6917-01 8 13424752 13424752 T C C8orf48 Silent p.S84S 0.12 TCGA-EI-6917-01 8 13425024 13425024 G T C8orf48 Missense_Mutation p.R175I 0.22 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 8 134472163 134472163 G A ST3GAL1 Silent p.F289F 0.30 TCGA-EI-6917-01 8 135521955 135521955 C A ZFAT Missense_Mutation p.Q1133H 0.21 tolerated(0.11) benign(0.097) TCGA-EI-6917-01 8 135622886 135622886 T C ZFAT Missense_Mutation p.D154G 0.25 deleterious(0.05) benign(0.212) TCGA-EI-6917-01 8 135817170 135817170 C T MIR30D RNA 0.19 TCGA-EI-6917-01 8 139163582 139163582 A G FAM135B Missense_Mutation p.S1046P 0.22 deleterious(0) probably_damaging(0.961) TCGA-EI-6917-01 8 141285776 141285776 C T TRAPPC9 Silent p.S851S 0.23 TCGA-EI-6917-01 8 141415751 141415751 G A TRAPPC9 Silent p.I409I 0.34 TCGA-EI-6917-01 8 141771288 141771288 T C PTK2 Silent p.V436V 0.14 TCGA-EI-6917-01 8 141829039 141829039 G T PTK2 Missense_Mutation p.F243L 0.29 deleterious(0.03) possibly_damaging(0.759) TCGA-EI-6917-01 8 141874487 141874487 C T PTK2 Missense_Mutation p.R125K 0.24 deleterious(0) benign(0.435) TCGA-EI-6917-01 8 142154307 142154307 C T DENND3 Silent p.F148F 0.22 TCGA-EI-6917-01 8 142202461 142202461 G A DENND3 Missense_Mutation p.M1057I 0.29 tolerated(0.32) benign(0.001) TCGA-EI-6917-01 8 143694543 143694543 C T ARC Missense_Mutation p.E364K 0.42 tolerated_low_confidence(0.11) benign(0.084) TCGA-EI-6917-01 8 143784536 143784536 C T LY6K Missense_Mutation p.A82V 0.25 deleterious(0.01) benign(0.046) TCGA-EI-6917-01 8 143957153 143957153 G A CYP11B1 Missense_Mutation p.R366C 0.25 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 8 144239774 144239774 C T LY6H Missense_Mutation p.E127K 0.35 tolerated(0.47) possibly_damaging(0.668) TCGA-EI-6917-01 8 144462261 144462261 G A RHPN1 Missense_Mutation p.E378K 0.25 tolerated(0.06) benign(0.016) TCGA-EI-6917-01 8 144688675 144688675 C T PYCRL Missense_Mutation p.D183N 0.27 tolerated(0.11) benign(0.32) TCGA-EI-6917-01 8 144735444 144735444 C T ZNF623 3'UTR 0.26 TCGA-EI-6917-01 8 144886956 144886956 C T SCRIB Missense_Mutation p.A931T 0.33 possibly_damaging(0.629) TCGA-EI-6917-01 8 144991258 144991258 C T PLEC Missense_Mutation p.R4381H 0.26 probably_damaging(0.999) TCGA-EI-6917-01 8 145095715 145095715 C T SPATC1 Missense_Mutation p.A338V 0.30 tolerated(0.16) benign(0.016) TCGA-EI-6917-01 8 145095774 145095774 G A SPATC1 Missense_Mutation p.A358T 0.35 tolerated(1) benign(0.311) TCGA-EI-6917-01 8 145557075 145557075 C A SCRT1 Missense_Mutation p.E273D 0.30 deleterious(0) unknown(0) TCGA-EI-6917-01 8 145580529 145580529 C T FBXL6 Missense_Mutation p.R273Q 0.33 tolerated(0.37) benign(0.391) TCGA-EI-6917-01 8 145947691 145947691 G A ZNF251 Nonsense_Mutation p.R452* 0.21 TCGA-EI-6917-01 8 146029040 146029040 C T ZNF517 Silent p.F16F 0.24 TCGA-EI-6917-01 8 146156422 146156422 C T ZNF16 Missense_Mutation p.R584Q 0.19 tolerated(0.98) benign(0.003) TCGA-EI-6917-01 8 146157051 146157051 C T ZNF16 Silent p.E374E 0.31 TCGA-EI-6917-01 8 146279553 146279553 G A C8orf33 3'UTR 0.31 TCGA-EI-6917-01 8 15517098 15517098 G T TUSC3 Missense_Mutation p.R170I 0.27 tolerated(0.15) benign(0.139) TCGA-EI-6917-01 8 15978020 15978020 C T MSR1 Missense_Mutation p.D377N 0.28 deleterious(0) probably_damaging(0.927) TCGA-EI-6917-01 8 17188757 17188757 C T MTMR7 Missense_Mutation p.G256D 0.20 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 17815055 17815055 G A PCM1 Missense_Mutation p.R604Q 0.27 tolerated(1) benign(0.011) TCGA-EI-6917-01 8 17830131 17830131 A C PCM1 Missense_Mutation p.K1293T 0.24 tolerated(0.06) possibly_damaging(0.878) TCGA-EI-6917-01 8 17849104 17849104 C T PCM1 Missense_Mutation p.R1529C 0.22 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 8 18729391 18729391 C A PSD3 Missense_Mutation p.R328I 0.30 deleterious_low_confidence(0) possibly_damaging(0.494) TCGA-EI-6917-01 8 19362902 19362902 G A CSGALNACT1 Silent p.F148F 0.27 TCGA-EI-6917-01 8 19680854 19680854 G A INTS10 Missense_Mutation p.R189Q 0.17 tolerated(0.14) benign(0) TCGA-EI-6917-01 8 19700362 19700362 C T INTS10 Missense_Mutation p.S548L 0.25 tolerated(0.25) possibly_damaging(0.541) TCGA-EI-6917-01 8 19701727 19701727 G T INTS10 Missense_Mutation p.E620D 0.18 tolerated(0.64) benign(0) TCGA-EI-6917-01 8 19805714 19805714 G A LPL Missense_Mutation p.E38K 0.23 tolerated(0.31) benign(0.274) TCGA-EI-6917-01 8 19813497 19813497 G T LPL Missense_Mutation p.K307N 0.20 deleterious(0) probably_damaging(0.949) TCGA-EI-6917-01 8 2020569 2020569 G A MYOM2 Missense_Mutation p.R313H 0.36 deleterious(0.01) possibly_damaging(0.896) TCGA-EI-6917-01 8 2040263 2040263 G A MYOM2 Missense_Mutation p.D640N 0.25 tolerated(0.6) benign(0.031) TCGA-EI-6917-01 8 2056584 2056584 G A MYOM2 Silent p.E1002E 0.33 TCGA-EI-6917-01 8 21832234 21832234 C T XPO7 Silent p.R182R 0.22 TCGA-EI-6917-01 8 21856723 21856723 C T XPO7 Silent p.F850F 0.22 TCGA-EI-6917-01 8 21904079 21904079 C T FGF17 Missense_Mutation p.R98C 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 21986650 21986650 G T HR Missense_Mutation p.P12T 0.28 tolerated_low_confidence(0.06) benign(0.035) TCGA-EI-6917-01 8 22005987 22005987 C T LGI3 Missense_Mutation p.D445N 0.43 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 8 22006329 22006329 C T LGI3 Missense_Mutation p.D331N 0.26 deleterious(0.01) probably_damaging(0.961) TCGA-EI-6917-01 8 22020634 22020634 C T SFTPC Silent p.R81R 0.23 TCGA-EI-6917-01 8 22067157 22067157 C T BMP1 Silent p.F925F 0.29 TCGA-EI-6917-01 8 22548163 22548163 G A EGR3 Silent p.G329G 0.20 TCGA-EI-6917-01 8 22862116 22862116 G A RHOBTB2 Missense_Mutation p.D79N 0.36 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 23423702 23423702 G A SLC25A37 Missense_Mutation p.E98K 0.27 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 8 23429107 23429107 G A SLC25A37 Silent p.T252T 0.27 TCGA-EI-6917-01 8 24187507 24187507 G A ADAM28 Missense_Mutation p.D328N 0.22 tolerated(0.48) benign(0.021) TCGA-EI-6917-01 8 24193265 24193265 G A ADAM28 Intron 0.42 TCGA-EI-6917-01 8 24259590 24259590 T G ADAMDEC1 Missense_Mutation p.D435E 0.36 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 24775251 24775251 C A NEFM Missense_Mutation p.S628Y 0.30 deleterious(0) benign(0.438) TCGA-EI-6917-01 8 25136168 25136168 G A DOCK5 Missense_Mutation p.R103Q 0.25 tolerated(0.14) benign(0.01) TCGA-EI-6917-01 8 25198430 25198430 A C DOCK5 Missense_Mutation p.N789H 0.25 tolerated(0.07) possibly_damaging(0.519) TCGA-EI-6917-01 8 25265662 25265662 G A DOCK5 Missense_Mutation p.D1753N 0.21 tolerated(0.2) benign(0.001) TCGA-EI-6917-01 8 25747280 25747280 C T EBF2 Missense_Mutation p.D247N 0.48 deleterious(0) benign(0.08) TCGA-EI-6917-01 8 25899691 25899691 C T EBF2 Missense_Mutation p.V70I 0.31 deleterious(0.03) possibly_damaging(0.802) TCGA-EI-6917-01 8 26237216 26237216 G A BNIP3L 5'Flank 0.23 TCGA-EI-6917-01 8 26237983 26237983 G T BNIP3L 5'Flank 0.19 TCGA-EI-6917-01 8 26238671 26238671 G A BNIP3L 5'Flank 0.43 TCGA-EI-6917-01 8 26252752 26252752 G A BNIP3L Silent p.S97S 0.35 TCGA-EI-6917-01 8 26265603 26265603 G A BNIP3L Missense_Mutation p.E149K 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-EI-6917-01 8 26366723 26366723 C A PNMA2 5'UTR 0.40 TCGA-EI-6917-01 8 26722370 26722370 G A ADRA1A Silent p.F39F 0.19 TCGA-EI-6917-01 8 27151614 27151614 C T TRIM35 Missense_Mutation p.D249N 0.15 tolerated(0.07) possibly_damaging(0.799) TCGA-EI-6917-01 8 27277503 27277503 C T PTK2B Missense_Mutation p.S99F 0.34 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 8 27288825 27288825 C T PTK2B Intron 0.26 TCGA-EI-6917-01 8 27634121 27634121 G A ESCO2 Missense_Mutation p.R99K 0.20 deleterious(0) possibly_damaging(0.45) TCGA-EI-6917-01 8 27637764 27637764 C A ESCO2 Missense_Mutation p.S312Y 0.25 deleterious(0.04) possibly_damaging(0.77) TCGA-EI-6917-01 8 27657064 27657064 C T ESCO2 Missense_Mutation p.R502C 0.34 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 27823995 27823995 C A SCARA5 Missense_Mutation p.K59N 0.20 deleterious(0) possibly_damaging(0.701) TCGA-EI-6917-01 8 2818713 2818713 C T CSMD1 Missense_Mutation p.D3218N 0.22 benign(0.421) TCGA-EI-6917-01 8 28385059 28385059 G A FZD3 Missense_Mutation p.R261Q 0.27 tolerated(0.06) benign(0.416) TCGA-EI-6917-01 8 28828013 28828013 T C HMBOX1 Silent p.D159D 0.29 TCGA-EI-6917-01 8 28967022 28967022 C T KIF13B Missense_Mutation p.A1364T 0.21 tolerated(0.35) benign(0.028) TCGA-EI-6917-01 8 28999715 28999715 C T KIF13B Missense_Mutation p.D765N 0.27 deleterious(0) possibly_damaging(0.535) TCGA-EI-6917-01 8 29194738 29194738 G A DUSP4 Silent p.F330F 0.22 TCGA-EI-6917-01 8 2966164 2966164 C T CSMD1 Missense_Mutation p.D2239N 0.28 probably_damaging(0.958) TCGA-EI-6917-01 8 30210501 30210501 C T TUBBP1 RNA 0.31 TCGA-EI-6917-01 8 30436491 30436491 C T GTF2E2 Missense_Mutation p.E275K 0.36 deleterious(0.01) benign(0.251) TCGA-EI-6917-01 8 3046506 3046506 C T CSMD1 Missense_Mutation p.R1809Q 0.37 probably_damaging(0.999) TCGA-EI-6917-01 8 30700826 30700826 G A TEX15 Missense_Mutation p.S1903F 0.26 tolerated(0.09) possibly_damaging(0.822) TCGA-EI-6917-01 8 30705279 30705279 C T TEX15 Missense_Mutation p.E419K 0.28 tolerated(0.06) benign(0.087) TCGA-EI-6917-01 8 30705593 30705593 G A TEX15 Missense_Mutation p.T314I 0.14 deleterious(0.01) benign(0.375) TCGA-EI-6917-01 8 30705932 30705932 G A TEX15 Missense_Mutation p.S201L 0.19 tolerated(0.24) benign(0.01) TCGA-EI-6917-01 8 30889602 30889602 G A PURG Missense_Mutation p.R233C 0.22 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 8 30938738 30938738 G T WRN Nonsense_Mutation p.E399* 0.11 TCGA-EI-6917-01 8 3224583 3224583 G A CSMD1 Missense_Mutation p.S1029L 0.34 probably_damaging(0.999) TCGA-EI-6917-01 8 3326278 3326278 G A CSMD1 Missense_Mutation p.S506L 0.23 probably_damaging(0.936) TCGA-EI-6917-01 8 33356675 33356675 G A MAK16 3'UTR 0.29 TCGA-EI-6917-01 8 33451068 33451068 G A DUSP26 Missense_Mutation p.A140V 0.14 deleterious(0.02) probably_damaging(0.978) TCGA-EI-6917-01 8 35406970 35406970 C T UNC5D Silent p.N88N 0.19 TCGA-EI-6917-01 8 36642113 36642113 G T KCNU1 Missense_Mutation p.G62V 0.19 deleterious(0.03) possibly_damaging(0.844) TCGA-EI-6917-01 8 36766859 36766859 C T KCNU1 Missense_Mutation p.R713W 0.32 deleterious(0) possibly_damaging(0.847) TCGA-EI-6917-01 8 38050281 38050281 A G BAG4 Missense_Mutation p.T116A 0.29 tolerated(0.21) benign(0.015) TCGA-EI-6917-01 8 38122391 38122391 G T PPAPDC1B Intron 0.30 TCGA-EI-6917-01 8 38137094 38137094 G A WHSC1L1 Nonsense_Mutation p.R1242* 0.42 TCGA-EI-6917-01 8 38148108 38148108 G T WHSC1L1 Missense_Mutation p.F1001L 0.20 tolerated(0.21) benign(0.118) TCGA-EI-6917-01 8 38173513 38173513 G A WHSC1L1 Missense_Mutation p.R635C 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 8 38175379 38175379 C T WHSC1L1 Intron 0.20 TCGA-EI-6917-01 8 38677639 38677639 G T TACC1 Nonsense_Mutation p.E293* 0.32 TCGA-EI-6917-01 8 38704243 38704243 G A TACC1 Missense_Mutation p.R752Q 0.27 deleterious(0) probably_damaging(0.934) TCGA-EI-6917-01 8 38874818 38874818 G A ADAM9 Missense_Mutation p.R164Q 0.21 tolerated(0.37) benign(0.023) TCGA-EI-6917-01 8 38994208 38994208 G T ADAM32 Missense_Mutation p.E57D 0.32 deleterious(0.05) possibly_damaging(0.871) TCGA-EI-6917-01 8 39534962 39534962 C T ADAM18 Missense_Mutation p.A513V 0.27 deleterious(0.04) probably_damaging(0.977) TCGA-EI-6917-01 8 39587426 39587426 C T ADAM18 Silent p.S729S 0.24 TCGA-EI-6917-01 8 39682415 39682415 T G ADAM2 Missense_Mutation p.N64H 0.13 tolerated(0.54) benign(0.012) TCGA-EI-6917-01 8 39780096 39780096 C T IDO1 Missense_Mutation p.R155C 0.22 deleterious(0) probably_damaging(0.942) TCGA-EI-6917-01 8 41394801 41394801 C T GINS4 Missense_Mutation p.R96C 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 41397253 41397253 G A GINS4 Silent p.E118E 0.25 TCGA-EI-6917-01 8 41580738 41580738 C T ANK1 Missense_Mutation p.E305K 0.37 deleterious(0.01) possibly_damaging(0.881) TCGA-EI-6917-01 8 41791795 41791795 C T KAT6A Missense_Mutation p.D1315N 0.19 unknown(0) TCGA-EI-6917-01 8 41792352 41792352 C T KAT6A Missense_Mutation p.R1129Q 0.25 possibly_damaging(0.847) TCGA-EI-6917-01 8 41838375 41838375 C T KAT6A Missense_Mutation p.R299H 0.17 probably_damaging(1) TCGA-EI-6917-01 8 42026571 42026571 C T AP3M2 Nonsense_Mutation p.R417* 0.16 TCGA-EI-6917-01 8 42026585 42026585 G C AP3M2 3'UTR 0.13 TCGA-EI-6917-01 8 42231685 42231685 C T DKK4 Missense_Mutation p.R203Q 0.26 tolerated(0.31) benign(0.228) TCGA-EI-6917-01 8 42587619 42587619 C T CHRNB3 Missense_Mutation p.A390V 0.27 deleterious(0.03) benign(0.098) TCGA-EI-6917-01 8 42608311 42608311 G T CHRNA6 3'UTR 0.12 TCGA-EI-6917-01 8 42614217 42614217 G A CHRNA6 Missense_Mutation p.R87C 0.32 deleterious(0.01) probably_damaging(0.979) TCGA-EI-6917-01 8 43155760 43155760 T C RNU6-104P 5'Flank 0.23 TCGA-EI-6917-01 8 43212112 43212112 C T POTEA RNA 0.33 TCGA-EI-6917-01 8 48883364 48883364 C T MCM4 Silent p.F576F 0.57 TCGA-EI-6917-01 8 52284478 52284478 C T PXDNL Missense_Mutation p.E1286K 0.17 tolerated(0.19) benign(0.217) TCGA-EI-6917-01 8 52505194 52505194 G A PXDNL Silent p.L101L 0.22 TCGA-EI-6917-01 8 53062531 53062531 C T ST18 Missense_Mutation p.E605K 0.27 tolerated(0.1) benign(0.407) TCGA-EI-6917-01 8 53548595 53548595 G A RB1CC1 Missense_Mutation p.R1458W 0.24 deleterious(0) probably_damaging(0.971) TCGA-EI-6917-01 8 54714452 54714452 G A ATP6V1H Missense_Mutation p.S195L 0.36 deleterious(0) possibly_damaging(0.758) TCGA-EI-6917-01 8 55541288 55541288 G A RP1 Missense_Mutation p.E1616K 0.37 deleterious(0) possibly_damaging(0.651) TCGA-EI-6917-01 8 56675551 56675551 C A TMEM68 5'UTR 0.24 TCGA-EI-6917-01 8 59343121 59343121 C T UBXN2B Nonsense_Mutation p.R78* 0.17 TCGA-EI-6917-01 8 59512336 59512336 C T NSMAF Missense_Mutation p.D507N 0.13 tolerated(0.11) benign(0.078) TCGA-EI-6917-01 8 61135236 61135236 C T CA8 Missense_Mutation p.R237Q 0.15 deleterious(0.01) benign(0.024) TCGA-EI-6917-01 8 6266842 6266842 A C MCPH1 Missense_Mutation p.E22A 0.28 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 8 64100128 64100128 G A YTHDF3 Missense_Mutation p.R519H 0.31 deleterious(0.02) possibly_damaging(0.715) TCGA-EI-6917-01 8 65495197 65495197 G T BHLHE22 3'UTR 0.31 TCGA-EI-6917-01 8 66989093 66989093 G A DNAJC5B Silent p.S106S 0.34 TCGA-EI-6917-01 8 67039510 67039510 G A TRIM55 Missense_Mutation p.A3T 0.22 tolerated(1) benign(0.001) TCGA-EI-6917-01 8 67089079 67089079 T G CRH 3'UTR 0.25 TCGA-EI-6917-01 8 67476858 67476858 A C MYBL1 3'UTR 0.16 TCGA-EI-6917-01 8 67547158 67547158 G A VCPIP1 Nonsense_Mutation p.R1083* 0.18 TCGA-EI-6917-01 8 67579047 67579047 G A VCPIP1 Silent p.C49C 0.17 TCGA-EI-6917-01 8 67817549 67817549 A G MCMDC2 Missense_Mutation p.T620A 0.24 tolerated(0.31) benign(0.119) TCGA-EI-6917-01 8 67923041 67923041 C T PPP1R42 Missense_Mutation p.S154N 0.22 tolerated(0.11) possibly_damaging(0.465) TCGA-EI-6917-01 8 68107813 68107813 G A CSPP1 Silent p.S1217S 0.47 TCGA-EI-6917-01 8 68179178 68179178 C T ARFGEF1 Silent p.S618S 0.36 TCGA-EI-6917-01 8 68334862 68334862 G A CPA6 Silent p.F397F 0.35 TCGA-EI-6917-01 8 68950476 68950476 G A PREX2 Missense_Mutation p.R263Q 0.13 deleterious(0) possibly_damaging(0.837) TCGA-EI-6917-01 8 68981343 68981343 G T PREX2 Missense_Mutation p.R472I 0.34 deleterious(0) probably_damaging(0.993) TCGA-EI-6917-01 8 6913035 6913035 C T DEFA5 Missense_Mutation p.R68Q 0.17 deleterious(0.01) benign(0.266) TCGA-EI-6917-01 8 69136817 69136817 G A PREX2 Silent p.A1577A 0.42 TCGA-EI-6917-01 8 69351872 69351872 G T C8orf34 Nonsense_Mutation p.E156* 0.40 TCGA-EI-6917-01 8 69621251 69621251 G T C8orf34 Nonsense_Mutation p.E422* 0.29 TCGA-EI-6917-01 8 70550817 70550817 C A SULF1 Missense_Mutation p.L789I 0.23 deleterious(0.01) possibly_damaging(0.688) TCGA-EI-6917-01 8 70551084 70551084 C A SULF1 Missense_Mutation p.L848I 0.38 tolerated_low_confidence(0.15) benign(0.009) TCGA-EI-6917-01 8 70588852 70588852 C T SLCO5A1 Missense_Mutation p.R694Q 0.27 deleterious(0) probably_damaging(0.957) TCGA-EI-6917-01 8 71646243 71646243 T C XKR9 Silent p.L236L 0.24 TCGA-EI-6917-01 8 72942175 72942175 C A TRPA1 Missense_Mutation p.E966D 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-EI-6917-01 8 73958388 73958388 C T TERF1 3'UTR 0.19 TCGA-EI-6917-01 8 75737716 75737716 C T PI15 Missense_Mutation p.R78W 0.29 deleterious(0.02) probably_damaging(1) TCGA-EI-6917-01 8 75924718 75924718 C A CRISPLD1 Nonsense_Mutation p.C103* 0.24 TCGA-EI-6917-01 8 75929566 75929566 C T CRISPLD1 Silent p.I336I 0.15 TCGA-EI-6917-01 8 77617133 77617133 C T ZFHX4 Silent p.S270S 0.29 TCGA-EI-6917-01 8 77618657 77618657 C T ZFHX4 Silent p.V778V 0.25 TCGA-EI-6917-01 8 77620171 77620171 G A ZFHX4 Missense_Mutation p.G994D 0.22 probably_damaging(0.969) TCGA-EI-6917-01 8 77767954 77767954 C T ZFHX4 Nonsense_Mutation p.R2933* 0.33 TCGA-EI-6917-01 8 80677421 80677421 C A HEY1 3'UTR 0.34 TCGA-EI-6917-01 8 80942489 80942489 C A MRPS28 5'UTR 0.20 TCGA-EI-6917-01 8 82571486 82571486 G T IMPA1 3'Flank 0.27 TCGA-EI-6917-01 8 82741683 82741683 G T SNX16 Missense_Mutation p.F148L 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 86049719 86049719 C T LRRCC1 Missense_Mutation p.R784C 0.27 deleterious(0.01) benign(0.081) TCGA-EI-6917-01 8 86354340 86354340 C T CA3 Missense_Mutation p.R91C 0.19 tolerated(0.13) probably_damaging(0.999) TCGA-EI-6917-01 8 86386624 86386624 C T CA2 Silent p.A141A 0.20 TCGA-EI-6917-01 8 87443894 87443894 G A WWP1 Missense_Mutation p.R508H 0.25 tolerated(0.12) probably_damaging(0.971) TCGA-EI-6917-01 8 88249246 88249246 C T CNBD1 Missense_Mutation p.S226L 0.22 deleterious(0.01) possibly_damaging(0.754) TCGA-EI-6917-01 8 89131085 89131085 C A MMP16 Missense_Mutation p.D239Y 0.22 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 89339394 89339394 G A MMP16 Silent p.F14F 0.37 TCGA-EI-6917-01 8 92375761 92375761 G A SLC26A7 Missense_Mutation p.D495N 0.25 tolerated(0.69) benign(0.004) TCGA-EI-6917-01 8 92378919 92378919 A G SLC26A7 Missense_Mutation p.N534D 0.22 tolerated(0.45) benign(0.075) TCGA-EI-6917-01 8 92407480 92407480 G T SLC26A7 3'Flank 0.30 TCGA-EI-6917-01 8 92972384 92972384 A C RUNX1T1 3'UTR 0.29 TCGA-EI-6917-01 8 92998534 92998534 T C RUNX1T1 Missense_Mutation p.D377G 0.30 tolerated(0.41) benign(0.179) TCGA-EI-6917-01 8 94740542 94740542 T G FAM92A1 3'UTR 0.31 TCGA-EI-6917-01 8 94934812 94934812 G T PDP1 Missense_Mutation p.E200D 0.21 tolerated(0.27) possibly_damaging(0.703) TCGA-EI-6917-01 8 95403952 95403952 G T RAD54B Missense_Mutation p.S565Y 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-EI-6917-01 8 95658444 95658444 G T ESRP1 Nonsense_Mutation p.E142* 0.38 TCGA-EI-6917-01 8 95942841 95942841 C A TP53INP1 Nonsense_Mutation p.E197* 0.30 TCGA-EI-6917-01 8 96064445 96064445 C T NDUFAF6 Missense_Mutation p.A287V 0.19 tolerated(0.35) possibly_damaging(0.456) TCGA-EI-6917-01 8 96070070 96070070 C T NDUFAF6 Nonsense_Mutation p.R303* 0.29 TCGA-EI-6917-01 8 96166799 96166799 G A PLEKHF2 Missense_Mutation p.R176H 0.17 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 8 97797270 97797270 G A CPQ Missense_Mutation p.A49T 0.40 tolerated(0.56) benign(0.007) TCGA-EI-6917-01 8 98155282 98155282 C A CPQ Missense_Mutation p.F430L 0.12 deleterious(0) probably_damaging(0.941) TCGA-EI-6917-01 8 98731338 98731338 G A MTDH Missense_Mutation p.R481H 0.28 tolerated(0.14) benign(0.006) TCGA-EI-6917-01 8 98991175 98991175 C T MATN2 Silent p.G340G 0.19 TCGA-EI-6917-01 8 99006759 99006759 A G MATN2 Missense_Mutation p.N378S 0.30 tolerated(0.46) benign(0.122) TCGA-EI-6917-01 8 99440889 99440889 G A KCNS2 Missense_Mutation p.E228K 0.29 tolerated(0.54) probably_damaging(0.972) TCGA-EI-6917-01 8 99441038 99441038 G T KCNS2 Silent p.V277V 0.35 TCGA-EI-6917-01 9 100071817 100071817 C A CCDC180 Missense_Mutation p.S108Y 0.23 deleterious(0) probably_damaging(0.953) TCGA-EI-6917-01 9 100087344 100087344 C T CCDC180 Missense_Mutation p.S516L 0.17 tolerated(0.38) benign(0.011) TCGA-EI-6917-01 9 100122270 100122270 A G CCDC180 Missense_Mutation p.T1168A 0.31 tolerated(0.08) benign(0.388) TCGA-EI-6917-01 9 100222690 100222690 G A TDRD7 Silent p.P362P 0.23 TCGA-EI-6917-01 9 100308517 100308517 G A TMOD1 Silent p.A57A 0.26 TCGA-EI-6917-01 9 100373977 100373977 C T TSTD2 Missense_Mutation p.R203Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 9 100617841 100617841 C A FOXE1 3'UTR 0.29 TCGA-EI-6917-01 9 100617914 100617914 C T FOXE1 3'UTR 0.26 TCGA-EI-6917-01 9 100618387 100618387 C A FOXE1 3'UTR 0.22 TCGA-EI-6917-01 9 100693142 100693142 C A HEMGN Nonsense_Mutation p.E179* 0.28 TCGA-EI-6917-01 9 100839295 100839295 A C NANS Missense_Mutation p.K148N 0.25 tolerated(0.12) benign(0.013) TCGA-EI-6917-01 9 101304265 101304265 G A GABBR2 Missense_Mutation p.R174W 0.25 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 9 101777744 101777744 G A COL15A1 Missense_Mutation p.E467K 0.25 tolerated_low_confidence(0.39) benign(0.009) TCGA-EI-6917-01 9 101891277 101891277 C T TGFBR1 Nonsense_Mutation p.R80* 0.18 TCGA-EI-6917-01 9 101900288 101900288 C T TGFBR1 Missense_Mutation p.S241L 0.20 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 9 102595047 102595047 G A NR4A3 Missense_Mutation p.R354Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 9 103109642 103109642 C A TEX10 Missense_Mutation p.S76I 0.17 deleterious(0.01) possibly_damaging(0.602) TCGA-EI-6917-01 9 103204233 103204233 G A MSANTD3 Missense_Mutation p.E5K 0.19 tolerated_low_confidence(0.09) probably_damaging(0.931) TCGA-EI-6917-01 9 104130513 104130513 G A BAAT Silent p.F186F 0.30 TCGA-EI-6917-01 9 104133245 104133245 G A BAAT Nonsense_Mutation p.R148* 0.20 TCGA-EI-6917-01 9 104314779 104314779 G A RNF20 Missense_Mutation p.A549T 0.25 tolerated(0.28) benign(0) TCGA-EI-6917-01 9 104323089 104323089 G A RNF20 Missense_Mutation p.A797T 0.20 deleterious(0.03) benign(0.436) TCGA-EI-6917-01 9 104449191 104449191 C T GRIN3A Missense_Mutation p.D331N 0.21 tolerated(0.07) benign(0.009) TCGA-EI-6917-01 9 107367100 107367100 G A OR13C2 Missense_Mutation p.S270L 0.30 deleterious(0.02) benign(0.009) TCGA-EI-6917-01 9 107457339 107457339 A T OR13D1 Missense_Mutation p.I213F 0.29 deleterious(0.01) possibly_damaging(0.862) TCGA-EI-6917-01 9 107457469 107457469 C T OR13D1 Missense_Mutation p.S256F 0.27 deleterious(0) probably_damaging(0.936) TCGA-EI-6917-01 9 107528732 107528732 C T NIPSNAP3B Missense_Mutation p.R63W 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-EI-6917-01 9 107546670 107546670 T G ABCA1 Missense_Mutation p.N2238H 0.26 tolerated(0.07) benign(0.001) TCGA-EI-6917-01 9 107558433 107558433 C A ABCA1 Missense_Mutation p.K1761N 0.25 tolerated(0.13) benign(0.14) TCGA-EI-6917-01 9 109687209 109687209 C T ZNF462 Missense_Mutation p.S339L 0.29 benign(0.32) TCGA-EI-6917-01 9 109773269 109773269 C T ZNF462 Silent p.A2493A 0.32 TCGA-EI-6917-01 9 111617328 111617328 G A ACTL7B Missense_Mutation p.R295C 0.23 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 9 111617549 111617549 C T ACTL7B Missense_Mutation p.R221H 0.30 deleterious(0.02) benign(0.024) TCGA-EI-6917-01 9 111653582 111653582 C T IKBKAP Missense_Mutation p.A1021T 0.28 deleterious(0) possibly_damaging(0.839) TCGA-EI-6917-01 9 111693405 111693405 G A IKBKAP Missense_Mutation p.R8W 0.27 deleterious(0) possibly_damaging(0.883) TCGA-EI-6917-01 9 111899876 111899876 C T FRRS1L Silent p.P298P 0.15 TCGA-EI-6917-01 9 111899890 111899890 C A FRRS1L Missense_Mutation p.D294Y 0.40 tolerated(0.06) benign(0.046) TCGA-EI-6917-01 9 112153441 112153441 A C PTPN3 Missense_Mutation p.Y695D 0.38 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 9 112900362 112900362 C T PALM2-AKAP2 Silent p.F846F 0.29 TCGA-EI-6917-01 9 113065912 113065912 G A TXNDC8 3'UTR 0.25 TCGA-EI-6917-01 9 114480500 114480500 C T C9orf84 Missense_Mutation p.D670N 0.18 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 9 115931907 115931907 C T FKBP15 Missense_Mutation p.E1028K 0.24 tolerated_low_confidence(0.14) benign(0.009) TCGA-EI-6917-01 9 115946040 115946040 C T FKBP15 Missense_Mutation p.R601Q 0.54 tolerated(0.31) probably_damaging(0.998) TCGA-EI-6917-01 9 115948554 115948554 C T FKBP15 Silent p.P491P 0.25 TCGA-EI-6917-01 9 116093370 116093370 C A WDR31 Missense_Mutation p.R48I 0.32 tolerated(0.16) benign(0.265) TCGA-EI-6917-01 9 116632 116632 C T FOXD4 3'UTR 0.16 TCGA-EI-6917-01 9 116931127 116931127 G A COL27A1 Missense_Mutation p.G431E 0.29 unknown(0) TCGA-EI-6917-01 9 117066906 117066906 G A COL27A1 Missense_Mutation p.A1631T 0.33 unknown(0) TCGA-EI-6917-01 9 117228631 117228631 C T DFNB31 Silent p.T293T 0.41 TCGA-EI-6917-01 9 117692428 117692428 G A TNFSF8 Silent p.F52F 0.25 TCGA-EI-6917-01 9 117748 117748 G A FOXD4 Silent p.R124R 0.11 TCGA-EI-6917-01 9 117838831 117838831 G A TNC Nonsense_Mutation p.R900* 0.24 TCGA-EI-6917-01 9 117846657 117846657 G A TNC Silent p.V654V 0.21 TCGA-EI-6917-01 9 117848839 117848839 G A TNC Missense_Mutation p.R391W 0.23 deleterious(0.01) possibly_damaging(0.846) TCGA-EI-6917-01 9 119033606 119033606 A G PAPPA Missense_Mutation p.D955G 0.32 tolerated(0.18) benign(0) TCGA-EI-6917-01 9 119115959 119115959 C A PAPPA Missense_Mutation p.P1412T 0.19 deleterious(0) possibly_damaging(0.641) TCGA-EI-6917-01 9 120476537 120476537 G T TLR4 Missense_Mutation p.D711Y 0.40 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 9 121929933 121929933 G A BRINP1 Missense_Mutation p.S572L 0.44 deleterious(0) possibly_damaging(0.885) TCGA-EI-6917-01 9 123156800 123156800 G T CDK5RAP2 Silent p.I1856I 0.22 TCGA-EI-6917-01 9 123787736 123787736 A C C5 Silent p.S332S 0.34 TCGA-EI-6917-01 9 124115520 124115520 G A STOM Missense_Mutation p.S100L 0.19 deleterious(0) possibly_damaging(0.672) TCGA-EI-6917-01 9 125273593 125273593 G A OR1J2 Silent p.A171A 0.28 TCGA-EI-6917-01 9 125391801 125391801 G A OR1B1 Missense_Mutation p.A5V 0.16 deleterious(0.01) benign(0.172) TCGA-EI-6917-01 9 125423852 125423852 G T OR1L1 5'Flank 0.18 TCGA-EI-6917-01 9 125423892 125423892 C A OR1L1 5'Flank 0.17 TCGA-EI-6917-01 9 125437589 125437589 T G OR1L3 Missense_Mutation p.F61V 0.25 deleterious(0.01) benign(0.259) TCGA-EI-6917-01 9 125438220 125438220 G A OR1L3 Missense_Mutation p.R271Q 0.25 tolerated(0.22) benign(0.074) TCGA-EI-6917-01 9 125438311 125438311 G T OR1L3 Missense_Mutation p.Q301H 0.14 deleterious(0.02) benign(0.141) TCGA-EI-6917-01 9 125512017 125512017 C T OR1L6 5'Flank 0.20 TCGA-EI-6917-01 9 125621000 125621000 G A RC3H2 Missense_Mutation p.S744L 0.19 tolerated(0.13) benign(0.022) TCGA-EI-6917-01 9 125642494 125642494 G A RC3H2 Intron 0.26 TCGA-EI-6917-01 9 125652513 125652513 G A RC3H2 Intron 0.33 TCGA-EI-6917-01 9 125861826 125861826 C T RABGAP1 Missense_Mutation p.R963W 0.23 deleterious(0) probably_damaging(0.99) TCGA-EI-6917-01 9 126144716 126144716 C A DENND1A Missense_Mutation p.Q675H 0.29 deleterious(0.02) benign(0.396) TCGA-EI-6917-01 9 12704564 12704564 C T TYRP1 Nonsense_Mutation p.R374* 0.18 TCGA-EI-6917-01 9 12709072 12709072 C T TYRP1 Missense_Mutation p.R502C 0.23 deleterious(0.01) possibly_damaging(0.816) TCGA-EI-6917-01 9 127253446 127253446 G A NR5A1 Missense_Mutation p.A351V 0.46 deleterious(0.02) benign(0.065) TCGA-EI-6917-01 9 127714987 127714987 A G SCAI 3'Flank 0.27 TCGA-EI-6917-01 9 127912146 127912146 C T PPP6C Missense_Mutation p.E279K 0.26 deleterious(0) benign(0.074) TCGA-EI-6917-01 9 127915952 127915952 G A PPP6C Nonsense_Mutation p.R214* 0.23 TCGA-EI-6917-01 9 128117940 128117940 G A GAPVD1 Missense_Mutation p.A1286T 0.23 tolerated(0.13) benign(0.298) TCGA-EI-6917-01 9 128724429 128724429 A G PBX3 Missense_Mutation p.N353S 0.23 tolerated(0.89) benign(0) TCGA-EI-6917-01 9 129265486 129265486 G A MVB12B Missense_Mutation p.A302T 0.29 deleterious(0) benign(0.296) TCGA-EI-6917-01 9 129598667 129598667 C A ZBTB43 3'UTR 0.23 TCGA-EI-6917-01 9 129977103 129977103 T C RALGPS1 Silent p.C542C 0.14 TCGA-EI-6917-01 9 130119531 130119531 A G GARNL3 Missense_Mutation p.T657A 0.34 tolerated(0.2) benign(0.004) TCGA-EI-6917-01 9 130453219 130453219 C T STXBP1 3'UTR 0.19 TCGA-EI-6917-01 9 130914483 130914483 C T LCN2 Missense_Mutation p.S166L 0.18 tolerated(0.16) benign(0.017) TCGA-EI-6917-01 9 13119539 13119539 G A MPDZ Missense_Mutation p.R1781C 0.31 deleterious(0) probably_damaging(0.91) TCGA-EI-6917-01 9 131196488 131196488 G T CERCAM Missense_Mutation p.E437D 0.25 tolerated(0.38) benign(0.155) TCGA-EI-6917-01 9 13136105 13136105 G A MPDZ Missense_Mutation p.L1457F 0.21 tolerated(0.41) benign(0.003) TCGA-EI-6917-01 9 131367389 131367389 G A SPTAN1 Missense_Mutation p.A1266T 0.28 tolerated(0.43) benign(0.115) TCGA-EI-6917-01 9 131767946 131767946 A C NUP188 Missense_Mutation p.N1587T 0.30 tolerated(0.46) benign(0.013) TCGA-EI-6917-01 9 132084238 132084238 G A C9orf106 RNA 0.32 TCGA-EI-6917-01 9 132401544 132401544 G A ASB6 Missense_Mutation p.R150C 0.27 deleterious(0) probably_damaging(0.94) TCGA-EI-6917-01 9 13247771 13247771 G A MPDZ Missense_Mutation p.R16C 0.24 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 9 132689494 132689494 C T FNBP1 Missense_Mutation p.E257K 0.32 tolerated(0.41) benign(0.001) TCGA-EI-6917-01 9 132982021 132982021 C A NCS1 Missense_Mutation p.F82L 0.24 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 9 133901680 133901680 T C LAMC3 Missense_Mutation p.Y128H 0.23 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 9 133948081 133948081 G A LAMC3 Silent p.E1092E 0.14 TCGA-EI-6917-01 9 134308065 134308065 G A PRRC2B Silent p.P59P 0.36 TCGA-EI-6917-01 9 134346274 134346274 G A PRRC2B Missense_Mutation p.D671N 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 9 134400512 134400512 C T UCK1 Missense_Mutation p.R255Q 0.19 tolerated(0.06) possibly_damaging(0.807) TCGA-EI-6917-01 9 135114495 135114495 C T NTNG2 Silent p.C353C 0.26 TCGA-EI-6917-01 9 135458378 135458378 G A BARHL1 Missense_Mutation p.R65Q 0.26 tolerated_low_confidence(0.19) possibly_damaging(0.457) TCGA-EI-6917-01 9 135523862 135523862 G T DDX31 Missense_Mutation p.H378N 0.28 tolerated(0.31) benign(0.098) TCGA-EI-6917-01 9 135558953 135558953 C A GTF3C4 Missense_Mutation p.L730M 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-EI-6917-01 9 135704083 135704083 G A AK8 Missense_Mutation p.R145C 0.28 deleterious(0) probably_damaging(0.984) TCGA-EI-6917-01 9 135944227 135944227 G A CEL Missense_Mutation p.G358D 0.12 tolerated(1) benign(0) TCGA-EI-6917-01 9 136216969 136216969 C A RPL7A Intron 0.30 TCGA-EI-6917-01 9 136320688 136320688 G C ADAMTS13 Silent p.R1177R 0.26 TCGA-EI-6917-01 9 136637093 136637093 G A VAV2 Silent p.F737F 0.38 TCGA-EI-6917-01 9 136901704 136901704 G T BRD3 Intron 0.30 TCGA-EI-6917-01 9 137804897 137804897 G T FCN1 Missense_Mutation p.L145I 0.21 deleterious(0.01) probably_damaging(0.991) TCGA-EI-6917-01 9 137982124 137982124 C T OLFM1 Silent p.V60V 0.28 TCGA-EI-6917-01 9 138012120 138012120 G A OLFM1 3'UTR 0.32 TCGA-EI-6917-01 9 138380692 138380692 C T PPP1R26 3'UTR 0.32 TCGA-EI-6917-01 9 138456100 138456100 G A PAEP Silent p.A107A 0.29 TCGA-EI-6917-01 9 138657599 138657599 C T KCNT1 Nonsense_Mutation p.R444* 0.22 TCGA-EI-6917-01 9 139641938 139641938 G A LCN6 Silent p.V56V 0.26 TCGA-EI-6917-01 9 139738901 139738901 C T C9orf172 Missense_Mutation p.S12L 0.28 deleterious(0) possibly_damaging(0.519) TCGA-EI-6917-01 9 139840999 139840999 C A C8G Silent p.I179I 0.21 TCGA-EI-6917-01 9 139879428 139879428 C A LCNL1 Missense_Mutation p.L154I 0.17 tolerated_low_confidence(0.39) unknown(0) TCGA-EI-6917-01 9 139908327 139908327 G A ABCA2 Silent p.F1468F 0.23 TCGA-EI-6917-01 9 140058266 140058266 C T GRIN1 Silent p.I854I 0.36 TCGA-EI-6917-01 9 140157574 140157574 G A NELFB Missense_Mutation p.R228H 0.30 deleterious(0) probably_damaging(0.995) TCGA-EI-6917-01 9 140347540 140347540 C T NSMF Missense_Mutation p.D339N 0.29 tolerated_low_confidence(0.14) benign(0.008) TCGA-EI-6917-01 9 140446980 140446980 C A MRPL41 3'UTR 0.23 TCGA-EI-6917-01 9 14088164 14088164 T A NFIB 3'UTR 0.24 TCGA-EI-6917-01 9 14722303 14722303 T G CER1 Missense_Mutation p.K123T 0.27 deleterious(0.04) possibly_damaging(0.783) TCGA-EI-6917-01 9 14775861 14775861 C T FREM1 Missense_Mutation p.A1595T 0.24 deleterious(0.01) possibly_damaging(0.616) TCGA-EI-6917-01 9 14851330 14851330 G A FREM1 Silent p.I368I 0.20 TCGA-EI-6917-01 9 15579012 15579012 A C CCDC171 Missense_Mutation p.K115Q 0.24 tolerated(0.7) benign(0.004) TCGA-EI-6917-01 9 16419299 16419299 C T BNC2 Silent p.A996A 0.26 TCGA-EI-6917-01 9 16436006 16436006 G A BNC2 Missense_Mutation p.S729L 0.26 deleterious(0.03) possibly_damaging(0.493) TCGA-EI-6917-01 9 16436585 16436585 C T BNC2 Missense_Mutation p.R536Q 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-EI-6917-01 9 16437255 16437255 C T BNC2 Missense_Mutation p.E313K 0.27 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 9 18777294 18777294 G A ADAMTSL1 Missense_Mutation p.D1023N 0.26 tolerated(0.33) benign(0.002) TCGA-EI-6917-01 9 19058693 19058693 A G HAUS6 Missense_Mutation p.V691A 0.26 tolerated(0.15) benign(0.117) TCGA-EI-6917-01 9 19346019 19346019 A C DENND4C Missense_Mutation p.K1035N 0.33 deleterious(0.04) benign(0.425) TCGA-EI-6917-01 9 19376543 19376543 T G RPS6 Missense_Mutation p.K201N 0.29 deleterious(0.05) benign(0.09) TCGA-EI-6917-01 9 19450716 19450716 C T ACER2 3'UTR 0.24 TCGA-EI-6917-01 9 19550143 19550143 G A SLC24A2 Missense_Mutation p.R491C 0.22 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 9 19786275 19786275 A C SLC24A2 Missense_Mutation p.F197C 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 9 2086832 2086832 C T SMARCA2 Missense_Mutation p.R844W 0.19 benign(0.385) TCGA-EI-6917-01 9 21410122 21410122 T G IFNA8 3'UTR 0.40 TCGA-EI-6917-01 9 22451720 22451720 C A DMRTA1 Missense_Mutation p.S442Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-EI-6917-01 9 2645604 2645604 G A VLDLR Missense_Mutation p.R448Q 0.29 deleterious(0) benign(0.35) TCGA-EI-6917-01 9 2645639 2645639 G T VLDLR Nonsense_Mutation p.E460* 0.16 TCGA-EI-6917-01 9 2647537 2647537 C T VLDLR Silent p.F589F 0.14 TCGA-EI-6917-01 9 2647581 2647581 G A VLDLR Missense_Mutation p.G604E 0.30 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 9 26998121 26998121 C A LRRC19 Missense_Mutation p.R67I 0.26 deleterious(0.05) benign(0.032) TCGA-EI-6917-01 9 27192559 27192559 G A TEK Missense_Mutation p.R521H 0.15 deleterious(0.04) probably_damaging(0.992) TCGA-EI-6917-01 9 27566920 27566920 G A C9orf72 Silent p.L67L 0.26 TCGA-EI-6917-01 9 27949151 27949151 G A LINGO2 Missense_Mutation p.R507C 0.31 tolerated(0.05) possibly_damaging(0.513) TCGA-EI-6917-01 9 32632535 32632535 G A TAF1L Missense_Mutation p.R1015C 0.29 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 9 32633060 32633060 G A TAF1L Missense_Mutation p.R840W 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-EI-6917-01 9 32984659 32984659 C T APTX Missense_Mutation p.R247Q 0.22 deleterious(0.03) possibly_damaging(0.908) TCGA-EI-6917-01 9 33294647 33294647 G A NFX1 Silent p.T85T 0.26 TCGA-EI-6917-01 9 33295286 33295286 G T NFX1 Missense_Mutation p.E298D 0.23 tolerated(0.6) benign(0.051) TCGA-EI-6917-01 9 33354175 33354175 C A NFX1 Missense_Mutation p.H941N 0.19 tolerated(0.08) benign(0) TCGA-EI-6917-01 9 33935857 33935857 C T UBAP2 Missense_Mutation p.R650Q 0.17 tolerated(0.22) probably_damaging(0.97) TCGA-EI-6917-01 9 33948605 33948605 G T UBAP2 Intron 0.24 TCGA-EI-6917-01 9 34306378 34306378 G A KIF24 Nonsense_Mutation p.R229* 0.26 TCGA-EI-6917-01 9 34489432 34489432 G A DNAI1 Missense_Mutation p.D125N 0.20 tolerated(0.49) benign(0.001) TCGA-EI-6917-01 9 34514713 34514713 C T DNAI1 Silent p.F598F 0.35 TCGA-EI-6917-01 9 34622394 34622394 C T ARID3C Missense_Mutation p.R333Q 0.30 tolerated(0.99) benign(0.014) TCGA-EI-6917-01 9 34622522 34622522 C A ARID3C Missense_Mutation p.E290D 0.29 tolerated(0.21) benign(0.015) TCGA-EI-6917-01 9 34657078 34657078 G T IL11RA Missense_Mutation p.E126D 0.37 deleterious(0.02) probably_damaging(0.984) TCGA-EI-6917-01 9 34662368 34662368 C T CCL27 Missense_Mutation p.R39Q 0.32 tolerated(0.15) benign(0.116) TCGA-EI-6917-01 9 34724165 34724165 G A FAM205A Silent p.P1024P 0.25 TCGA-EI-6917-01 9 34724748 34724748 G T FAM205A Nonsense_Mutation p.S830* 0.30 TCGA-EI-6917-01 9 34724880 34724880 G A FAM205A Missense_Mutation p.S786L 0.27 deleterious(0.01) benign(0.004) TCGA-EI-6917-01 9 34834495 34834495 G A FAM205B RNA 0.17 TCGA-EI-6917-01 9 34834772 34834772 G T FAM205B RNA 0.18 TCGA-EI-6917-01 9 35044035 35044035 C A C9orf131 Nonsense_Mutation p.S470* 0.29 TCGA-EI-6917-01 9 35560765 35560765 C T RUSC2 Silent p.A1376A 0.30 TCGA-EI-6917-01 9 35618093 35618093 T C CD72 Silent p.E36E 0.42 TCGA-EI-6917-01 9 35618388 35618388 C T CD72 5'UTR 0.27 TCGA-EI-6917-01 9 35958009 35958009 G A OR2S2 Silent p.F29F 0.17 TCGA-EI-6917-01 9 36169902 36169902 C T CCIN Missense_Mutation p.R135C 0.12 tolerated(0.18) benign(0.007) TCGA-EI-6917-01 9 37357108 37357108 C A ZCCHC7 Missense_Mutation p.S492Y 0.15 tolerated(1) benign(0.004) TCGA-EI-6917-01 9 37441853 37441853 G A ZBTB5 Silent p.F232F 0.27 TCGA-EI-6917-01 9 37501727 37501727 C T POLR1E Missense_Mutation p.S329L 0.29 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 9 37588868 37588868 C T TOMM5 3'UTR 0.27 TCGA-EI-6917-01 9 37731068 37731068 G T FRMPD1 Missense_Mutation p.D276Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 9 37860057 37860057 G A DCAF10 Missense_Mutation p.R393Q 0.43 tolerated(0.05) benign(0.403) TCGA-EI-6917-01 9 3856038 3856038 G T GLIS3 Missense_Mutation p.S815Y 0.32 tolerated(0.27) possibly_damaging(0.621) TCGA-EI-6917-01 9 39144299 39144299 G A CNTNAP3 Missense_Mutation p.S565L 0.23 deleterious(0) possibly_damaging(0.627) TCGA-EI-6917-01 9 39171504 39171504 G A CNTNAP3 Nonsense_Mutation p.R399* 0.09 TCGA-EI-6917-01 9 40772462 40772462 T C ZNF658 Missense_Mutation p.Y938C 0.28 deleterious(0) probably_damaging(0.979) TCGA-EI-6917-01 9 4688535 4688535 G T CDC37L1 Missense_Mutation p.R146I 0.18 deleterious(0.04) benign(0.011) TCGA-EI-6917-01 9 4823599 4823599 G A RCL1 Missense_Mutation p.R63Q 0.21 tolerated(0.44) benign(0.103) TCGA-EI-6917-01 9 5054631 5054631 G A JAK2 Missense_Mutation p.R228Q 0.18 deleterious(0.02) benign(0.44) TCGA-EI-6917-01 9 5164167 5164167 C A INSL6 Nonsense_Mutation p.E130* 0.27 TCGA-EI-6917-01 9 5185363 5185363 G A INSL6 Silent p.F80F 0.60 TCGA-EI-6917-01 9 5335409 5335409 G A RLN1 Missense_Mutation p.R134C 0.26 tolerated(0.18) possibly_damaging(0.568) TCGA-EI-6917-01 9 5335539 5335539 G T RLN1 Missense_Mutation p.F90L 0.18 tolerated(0.44) benign(0.019) TCGA-EI-6917-01 9 5805753 5805753 A C ERMP1 Missense_Mutation p.F527L 0.28 tolerated(0.08) benign(0.041) TCGA-EI-6917-01 9 5810029 5810029 C T ERMP1 Silent p.A510A 0.33 TCGA-EI-6917-01 9 5897631 5897631 G A MLANA Missense_Mutation p.R51Q 0.30 deleterious(0.04) benign(0.048) TCGA-EI-6917-01 9 5921755 5921755 G A KIAA2026 Missense_Mutation p.S1414L 0.23 tolerated(0.08) benign(0.132) TCGA-EI-6917-01 9 6014686 6014686 T C RANBP6 Missense_Mutation p.I308V 0.28 tolerated(0.39) benign(0.015) TCGA-EI-6917-01 9 6015230 6015230 C T RANBP6 Silent p.R126R 0.22 TCGA-EI-6917-01 9 69120822 69120822 C T PGM5P2 RNA 0.23 TCGA-EI-6917-01 9 70917948 70917948 C T FOXD4L3 Silent p.I27I 0.16 TCGA-EI-6917-01 9 70919835 70919835 C A FOXD4L3 3'UTR 0.10 TCGA-EI-6917-01 9 71114209 71114209 C T PGM5 Missense_Mutation p.R516W 0.30 deleterious(0) possibly_damaging(0.586) TCGA-EI-6917-01 9 71396517 71396517 G T FAM122A 3'UTR 0.19 TCGA-EI-6917-01 9 71397274 71397274 G A FAM122A 3'UTR 0.22 TCGA-EI-6917-01 9 71509488 71509488 C T PIP5K1B Silent p.H235H 0.25 TCGA-EI-6917-01 9 71628957 71628957 C T PRKACG Missense_Mutation p.E18K 0.34 tolerated(0.11) benign(0.183) TCGA-EI-6917-01 9 72783642 72783642 A C MAMDC2 Missense_Mutation p.S477R 0.25 deleterious(0.01) possibly_damaging(0.895) TCGA-EI-6917-01 9 73027813 73027813 T G KLF9 Missense_Mutation p.K156T 0.14 deleterious(0.04) benign(0.036) TCGA-EI-6917-01 9 73151435 73151435 A G TRPM3 Missense_Mutation p.S1520P 0.22 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EI-6917-01 9 74365301 74365301 A G TMEM2 Intron 0.33 TCGA-EI-6917-01 9 74863413 74863413 C T GDA Intron 0.43 TCGA-EI-6917-01 9 75777721 75777721 G T ANXA1 Missense_Mutation p.D167Y 0.23 tolerated(0.12) benign(0.39) TCGA-EI-6917-01 9 77376943 77376943 C A TRPM6 Missense_Mutation p.E1548D 0.30 deleterious_low_confidence(0.03) benign(0.033) TCGA-EI-6917-01 9 77418794 77418794 T G TRPM6 Missense_Mutation p.R549S 0.32 tolerated(0.37) benign(0.003) TCGA-EI-6917-01 9 77598556 77598556 C T C9orf41 3'UTR 0.26 TCGA-EI-6917-01 9 77599858 77599858 T G C9orf41 Missense_Mutation p.K365Q 0.35 tolerated(0.16) benign(0.403) TCGA-EI-6917-01 9 79002337 79002337 C T RFK Missense_Mutation p.S149N 0.32 tolerated(0.48) benign(0.001) TCGA-EI-6917-01 9 79118038 79118038 G A GCNT1 Missense_Mutation p.M247I 0.21 tolerated(0.44) probably_damaging(0.957) TCGA-EI-6917-01 9 79120399 79120399 C A GCNT1 3'UTR 0.17 TCGA-EI-6917-01 9 79320760 79320760 C A PRUNE2 Nonsense_Mutation p.E2144* 0.29 TCGA-EI-6917-01 9 79321756 79321756 C T PRUNE2 Missense_Mutation p.E1812K 0.22 tolerated(0.18) benign(0.027) TCGA-EI-6917-01 9 79323135 79323135 G A PRUNE2 Missense_Mutation p.A1352V 0.19 tolerated(0.33) benign(0.051) TCGA-EI-6917-01 9 79323558 79323558 C A PRUNE2 Missense_Mutation p.S1211I 0.32 deleterious(0) possibly_damaging(0.86) TCGA-EI-6917-01 9 79465563 79465563 G T PRUNE2 Missense_Mutation p.L54M 0.24 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 9 79829248 79829248 G A VPS13A Missense_Mutation p.D234N 0.26 tolerated(0.56) benign(0) TCGA-EI-6917-01 9 79836210 79836210 G A VPS13A Missense_Mutation p.E367K 0.29 tolerated(0.05) benign(0.008) TCGA-EI-6917-01 9 79952416 79952416 G A VPS13A Missense_Mutation p.R2114Q 0.25 deleterious(0.03) benign(0.087) TCGA-EI-6917-01 9 79966274 79966274 C T VPS13A Missense_Mutation p.A2444V 0.23 tolerated(0.23) probably_damaging(0.967) TCGA-EI-6917-01 9 82340053 82340053 T G TLE4 Missense_Mutation p.I772M 0.20 tolerated(0.15) possibly_damaging(0.636) TCGA-EI-6917-01 9 84531786 84531786 C T SPATA31D5P RNA 0.26 TCGA-EI-6917-01 9 84534457 84534457 G A SPATA31D5P RNA 0.24 TCGA-EI-6917-01 9 84547688 84547688 G A RP11-383M4.6 Intron 0.24 TCGA-EI-6917-01 9 84609225 84609225 G T SPATA31D1 Missense_Mutation p.Q1280H 0.38 tolerated(0.25) benign(0.064) TCGA-EI-6917-01 9 85950538 85950538 G A FRMD3 Silent p.Y163Y 0.25 TCGA-EI-6917-01 9 86586213 86586213 T G HNRNPK Missense_Mutation p.E356A 0.22 tolerated(0.15) benign(0.101) TCGA-EI-6917-01 9 86617703 86617703 C A RMI1 Missense_Mutation p.S601Y 0.32 deleterious(0.03) benign(0.006) TCGA-EI-6917-01 9 88284455 88284455 C T AGTPBP1 Missense_Mutation p.E203K 0.28 deleterious(0) possibly_damaging(0.686) TCGA-EI-6917-01 9 88628736 88628736 C T NAA35 Missense_Mutation p.R498C 0.26 deleterious(0) probably_damaging(0.959) TCGA-EI-6917-01 9 88844503 88844503 C T C9orf153 Missense_Mutation p.D6N 0.18 tolerated(0.2) possibly_damaging(0.908) TCGA-EI-6917-01 9 88938021 88938021 T C ZCCHC6 Missense_Mutation p.T882A 0.23 tolerated(0.23) benign(0.003) TCGA-EI-6917-01 9 90497875 90497875 A G SPATA31E1 Silent p.P23P 0.14 TCGA-EI-6917-01 9 90535664 90535664 G A SPATA31C1 RNA 0.17 TCGA-EI-6917-01 9 91661756 91661756 T C SHC3 Intron 0.16 TCGA-EI-6917-01 9 94495702 94495702 G A ROR2 Silent p.I213I 0.26 TCGA-EI-6917-01 9 95152224 95152224 T G OGN Missense_Mutation p.K181T 0.34 deleterious(0.01) probably_damaging(0.912) TCGA-EI-6917-01 9 95177603 95177603 C T OMD Missense_Mutation p.R366Q 0.31 tolerated_low_confidence(0.14) benign(0.012) TCGA-EI-6917-01 9 95228659 95228659 C A ASPN Missense_Mutation p.M194I 0.27 deleterious(0.04) benign(0.013) TCGA-EI-6917-01 9 96420509 96420509 G A PHF2 Silent p.T410T 0.17 TCGA-EI-6917-01 9 97823040 97823040 G A C9orf3 Missense_Mutation p.R727Q 0.34 tolerated(0.56) benign(0.007) TCGA-EI-6917-01 9 97869390 97869390 C T FANCC Nonsense_Mutation p.W497* 0.27 TCGA-EI-6917-01 9 98774764 98774764 C A ERCC6L2 Missense_Mutation p.S283Y 0.16 deleterious(0.04) possibly_damaging(0.657) TCGA-EI-6917-01 9 99327763 99327763 G A CDC14B Missense_Mutation p.R55C 0.16 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 9 99520931 99520931 C A ZNF510 3'UTR 0.26 TCGA-EI-6917-01 9 99580676 99580676 G A ZNF782 Silent p.F543F 0.20 TCGA-EI-6917-01 9 99580880 99580880 C A ZNF782 Missense_Mutation p.E475D 0.15 deleterious(0.03) probably_damaging(0.995) TCGA-EI-6917-01 9 99694683 99694683 G A NUTM2G Silent p.A232A 0.12 TCGA-EI-6917-01 X 10102617 10102617 G A WWC3 Missense_Mutation p.R915Q 0.56 tolerated(0.23) possibly_damaging(0.68) TCGA-EI-6917-01 X 101159213 101159213 C A ZMAT1 Missense_Mutation p.R71I 0.48 deleterious(0) probably_damaging(0.991) TCGA-EI-6917-01 X 101970866 101970866 G T GPRASP2 Missense_Mutation p.D357Y 0.73 deleterious(0) benign(0.232) TCGA-EI-6917-01 X 101971414 101971414 G A GPRASP2 Silent p.E539E 0.37 TCGA-EI-6917-01 X 101972215 101972215 G A GPRASP2 Silent p.E806E 0.51 TCGA-EI-6917-01 X 102004337 102004337 T C BHLHB9 Silent p.D138D 0.50 TCGA-EI-6917-01 X 102004865 102004865 C A BHLHB9 Nonsense_Mutation p.C314* 0.59 TCGA-EI-6917-01 X 102864719 102864719 C T TCEAL3 3'UTR 0.58 TCGA-EI-6917-01 X 102968474 102968474 G A GLRA4 Nonsense_Mutation p.R353* 0.48 TCGA-EI-6917-01 X 103498876 103498876 C A ESX1 Missense_Mutation p.E155D 0.51 deleterious(0) possibly_damaging(0.874) TCGA-EI-6917-01 X 104464976 104464976 G A TEX13A Missense_Mutation p.L36F 0.62 tolerated(0.11) benign(0.106) TCGA-EI-6917-01 X 104512201 104512201 G A IL1RAPL2 Missense_Mutation p.R225Q 0.48 deleterious(0.01) probably_damaging(1) TCGA-EI-6917-01 X 105193577 105193577 T C NRK Missense_Mutation p.I1456T 0.13 tolerated(0.26) benign(0.005) TCGA-EI-6917-01 X 105450024 105450024 C T MUM1L1 Missense_Mutation p.S200L 0.62 tolerated(0.06) benign(0.014) TCGA-EI-6917-01 X 106096754 106096754 C A TBC1D8B Missense_Mutation p.F709L 0.56 deleterious(0.04) benign(0.167) TCGA-EI-6917-01 X 106097473 106097473 C T TBC1D8B Nonsense_Mutation p.R767* 0.51 TCGA-EI-6917-01 X 106198237 106198237 G T MORC4 Missense_Mutation p.H531N 0.45 tolerated(0.82) benign(0) TCGA-EI-6917-01 X 107408114 107408114 T C COL4A6 Silent p.G1322G 0.61 TCGA-EI-6917-01 X 107446173 107446173 G A COL4A6 Silent p.G274G 0.33 TCGA-EI-6917-01 X 107936002 107936002 G A COL4A5 Missense_Mutation p.R1518H 0.46 possibly_damaging(0.723) TCGA-EI-6917-01 X 107977812 107977812 G T IRS4 Missense_Mutation p.S588Y 0.64 deleterious_low_confidence(0) unknown(0) TCGA-EI-6917-01 X 109694878 109694878 G T RGAG1 Missense_Mutation p.A345S 0.73 tolerated(0.13) possibly_damaging(0.641) TCGA-EI-6917-01 X 109695329 109695329 G A RGAG1 Missense_Mutation p.G495E 0.65 tolerated(0.11) benign(0.01) TCGA-EI-6917-01 X 109764596 109764596 G T TDGF1P3 RNA 0.37 TCGA-EI-6917-01 X 110961417 110961417 C T ALG13 Nonsense_Mutation p.R389* 0.56 TCGA-EI-6917-01 X 111700385 111700385 G A ZCCHC16 3'UTR 0.39 TCGA-EI-6917-01 X 114239865 114239865 C T IL13RA2 Silent p.S337S 0.10 TCGA-EI-6917-01 X 114245288 114245288 C A IL13RA2 Missense_Mutation p.D209Y 0.54 deleterious(0) probably_damaging(0.997) TCGA-EI-6917-01 X 114541267 114541267 C T LUZP4 Silent p.L280L 0.51 TCGA-EI-6917-01 X 114880482 114880482 G A PLS3 Silent p.P451P 0.46 TCGA-EI-6917-01 X 117033197 117033197 T C KLHL13 Missense_Mutation p.T551A 0.63 tolerated(0.78) benign(0.01) TCGA-EI-6917-01 X 117054317 117054317 C T KLHL13 Missense_Mutation p.R89Q 0.46 deleterious(0) possibly_damaging(0.901) TCGA-EI-6917-01 X 117815759 117815759 T C DOCK11 Splice_Site p.X1988_splice 0.55 TCGA-EI-6917-01 X 118222412 118222412 G A KIAA1210 Silent p.V927V 0.64 TCGA-EI-6917-01 X 118223334 118223334 C A KIAA1210 Missense_Mutation p.R620I 0.51 deleterious(0.01) probably_damaging(0.961) TCGA-EI-6917-01 X 119037355 119037355 G T AKAP14 Nonsense_Mutation p.E57* 0.43 TCGA-EI-6917-01 X 119048789 119048789 G A AKAP14 Missense_Mutation p.R130Q 0.45 tolerated(0.57) benign(0.002) TCGA-EI-6917-01 X 119678368 119678368 G A CUL4B Nonsense_Mutation p.R369* 0.54 TCGA-EI-6917-01 X 119681075 119681075 G T CUL4B Missense_Mutation p.S249Y 0.41 tolerated(0.65) benign(0.127) TCGA-EI-6917-01 X 122598835 122598835 C T GRIA3 Silent p.F732F 0.55 TCGA-EI-6917-01 X 122755258 122755258 C T THOC2 Silent p.P1322P 0.60 TCGA-EI-6917-01 X 123224793 123224793 G A STAG2 Missense_Mutation p.R1186Q 0.51 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-EI-6917-01 X 127185751 127185751 G T ACTRT1 Silent p.L145L 0.41 TCGA-EI-6917-01 X 129350066 129350066 G A ZNF280C Nonsense_Mutation p.R513* 0.68 TCGA-EI-6917-01 X 12940264 12940264 C T TLR8 Silent p.V1035V 0.27 TCGA-EI-6917-01 X 129629752 129629752 G A RP1-274L7.1 Intron 0.46 TCGA-EI-6917-01 X 130419221 130419221 C T IGSF1 Missense_Mutation p.R200H 0.48 tolerated(0.48) benign(0.031) TCGA-EI-6917-01 X 131351092 131351092 C T RAP2C Missense_Mutation p.D69N 0.59 deleterious(0) benign(0.164) TCGA-EI-6917-01 X 131513432 131513432 T G MBNL3 3'UTR 0.40 TCGA-EI-6917-01 X 131513627 131513627 G T MBNL3 3'UTR 0.38 TCGA-EI-6917-01 X 132548879 132548879 A G GPC4 Missense_Mutation p.S39P 0.56 deleterious(0.04) possibly_damaging(0.726) TCGA-EI-6917-01 X 133087088 133087088 G A GPC3 Missense_Mutation p.A109V 0.54 deleterious(0.01) benign(0.225) TCGA-EI-6917-01 X 134680385 134680385 T G DDX26B Silent p.V140V 0.59 TCGA-EI-6917-01 X 134995050 134995050 A C SAGE1 Missense_Mutation p.K903N 0.52 deleterious(0.04) probably_damaging(0.994) TCGA-EI-6917-01 X 135429252 135429252 C A GPR112 Missense_Mutation p.F1129L 0.48 tolerated(0.75) benign(0) TCGA-EI-6917-01 X 135741442 135741442 C T CD40LG Silent p.C218C 0.55 TCGA-EI-6917-01 X 13626442 13626442 G T EGFL6 Splice_Site p.X219_splice 0.48 TCGA-EI-6917-01 X 13785372 13785372 G A OFD1 Missense_Mutation p.R909Q 0.50 tolerated(0.74) benign(0.417) TCGA-EI-6917-01 X 138644029 138644029 C A F9 Missense_Mutation p.F395L 0.48 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 X 138728992 138728992 C A MCF2 Missense_Mutation p.E32D 0.45 tolerated(0.66) benign(0.229) TCGA-EI-6917-01 X 138878611 138878611 C T ATP11C Missense_Mutation p.D346N 0.53 deleterious(0.04) probably_damaging(1) TCGA-EI-6917-01 X 14038642 14038642 C T GEMIN8 Silent p.S9S 0.47 TCGA-EI-6917-01 X 140985026 140985026 T C MAGEC3 Silent p.F494F 0.32 TCGA-EI-6917-01 X 140993447 140993447 C A MAGEC1 Missense_Mutation p.S86Y 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.608) TCGA-EI-6917-01 X 141290640 141290640 C A MAGEC2 3'UTR 0.38 TCGA-EI-6917-01 X 142716849 142716849 T C SLITRK4 Silent p.E692E 0.52 TCGA-EI-6917-01 X 142718967 142718967 G T SLITRK4 5'UTR 0.52 TCGA-EI-6917-01 X 142795419 142795419 C T SPANXN2 Missense_Mutation p.E87K 0.50 tolerated(0.36) benign(0.32) TCGA-EI-6917-01 X 144906443 144906443 G A SLITRK2 Missense_Mutation p.E834K 0.49 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 X 144909224 144909224 C A TMEM257 Nonsense_Mutation p.S10* 0.54 TCGA-EI-6917-01 X 1460714 1460714 C T IL3RA Missense_Mutation p.T19M 0.24 tolerated(0.16) benign(0.086) TCGA-EI-6917-01 X 1464295 1464295 G A IL3RA Missense_Mutation p.E51K 0.28 tolerated(0.93) benign(0.006) TCGA-EI-6917-01 X 150844743 150844743 T G PASD1 3'UTR 0.54 TCGA-EI-6917-01 X 150907281 150907281 G T CNGA2 Missense_Mutation p.D45Y 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EI-6917-01 X 151899490 151899490 C T MAGEA12 3'UTR 0.50 TCGA-EI-6917-01 X 152482140 152482140 G A MAGEA1 Missense_Mutation p.R291C 0.49 deleterious(0.03) possibly_damaging(0.519) TCGA-EI-6917-01 X 152614135 152614135 G A ZNF275 3'UTR 0.44 TCGA-EI-6917-01 X 152616734 152616734 C T ZNF275 3'UTR 0.52 TCGA-EI-6917-01 X 152710779 152710779 C T TREX2 Missense_Mutation p.R37H 0.31 deleterious(0.03) probably_damaging(1) TCGA-EI-6917-01 X 153219926 153219926 C T HCFC1 Silent p.S1308S 0.60 TCGA-EI-6917-01 X 153689540 153689540 C T PLXNA3 Silent p.S232S 0.67 TCGA-EI-6917-01 X 153880763 153880763 G A CTAG2 Missense_Mutation p.R138W 0.67 tolerated_low_confidence(0.06) benign(0.086) TCGA-EI-6917-01 X 154158427 154158427 A C F8 Missense_Mutation p.I1213S 0.61 tolerated(0.54) benign(0.009) TCGA-EI-6917-01 X 154300620 154300620 T C BRCC3 Splice_Site p.X47_splice 0.44 TCGA-EI-6917-01 X 154508501 154508501 G T CLIC2 Missense_Mutation p.F173L 0.67 deleterious(0) possibly_damaging(0.804) TCGA-EI-6917-01 X 154563724 154563724 G A CLIC2 Missense_Mutation p.R5W 0.09 deleterious(0) benign(0.187) TCGA-EI-6917-01 X 155010613 155010613 A G SPRY3 3'UTR 0.19 TCGA-EI-6917-01 X 155239480 155239480 G T IL9R Splice_Site p.X325_splice 0.50 TCGA-EI-6917-01 X 16863214 16863214 A C RBBP7 Missense_Mutation p.Y452D 0.50 deleterious(0) benign(0.14) TCGA-EI-6917-01 X 16864060 16864060 A C RBBP7 Missense_Mutation p.F411C 0.53 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 X 18593566 18593566 C T CDKL5 Missense_Mutation p.R80C 0.51 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-EI-6917-01 X 18600028 18600028 C A CDKL5 Missense_Mutation p.L141I 0.08 tolerated_low_confidence(0.28) possibly_damaging(0.874) TCGA-EI-6917-01 X 18802073 18802073 C T PPEF1 Silent p.I273I 0.53 TCGA-EI-6917-01 X 18807295 18807295 G A PPEF1 Silent p.S323S 0.51 TCGA-EI-6917-01 X 18917342 18917342 G T PHKA2 Missense_Mutation p.F1020L 0.50 tolerated(0.85) benign(0) TCGA-EI-6917-01 X 18958139 18958139 G A PHKA2 Nonsense_Mutation p.R298* 0.53 TCGA-EI-6917-01 X 18961840 18961840 G A PHKA2 Silent p.V235V 0.60 TCGA-EI-6917-01 X 19031950 19031950 A G GPR64 Missense_Mutation p.M318T 0.53 tolerated(0.63) benign(0.001) TCGA-EI-6917-01 X 20185776 20185776 G T RPS6KA3 Missense_Mutation p.F511L 0.42 tolerated(0.1) probably_damaging(0.972) TCGA-EI-6917-01 X 21609230 21609230 C T CNKSR2 Missense_Mutation p.A583V 0.47 deleterious(0.03) probably_damaging(0.989) TCGA-EI-6917-01 X 23019902 23019902 G A DDX53 Silent p.S576S 0.46 TCGA-EI-6917-01 X 24024382 24024382 G A KLHL15 Silent p.F143F 0.10 TCGA-EI-6917-01 X 26213143 26213143 G A MAGEB6 Missense_Mutation p.A394T 0.38 deleterious(0.03) probably_damaging(0.978) TCGA-EI-6917-01 X 29972647 29972647 G T IL1RAPL1 Missense_Mutation p.D404Y 0.37 deleterious(0) possibly_damaging(0.874) TCGA-EI-6917-01 X 29972713 29972713 G T IL1RAPL1 Nonsense_Mutation p.E426* 0.47 TCGA-EI-6917-01 X 30237713 30237713 C T MAGEB2 3'UTR 0.45 TCGA-EI-6917-01 X 30254710 30254710 C T MAGEB3 Silent p.I223I 0.57 TCGA-EI-6917-01 X 30269965 30269965 G T MAGEB1 3'UTR 0.34 TCGA-EI-6917-01 X 30742229 30742229 C T GK Missense_Mutation p.R499C 0.58 deleterious(0.01) probably_damaging(0.919) TCGA-EI-6917-01 X 30849636 30849636 C T TAB3 Missense_Mutation p.E683K 0.52 deleterious(0) probably_damaging(0.994) TCGA-EI-6917-01 X 31526340 31526340 C T DMD Intron 0.47 TCGA-EI-6917-01 X 31947806 31947806 A G DMD Silent p.T2273T 0.49 TCGA-EI-6917-01 X 3239636 3239636 C A MXRA5 Nonsense_Mutation p.E1364* 0.53 TCGA-EI-6917-01 X 34148347 34148347 C T FAM47A Silent p.S683S 0.49 TCGA-EI-6917-01 X 36007510 36007510 G A CXorf22 Missense_Mutation p.E930K 0.57 deleterious(0.04) benign(0.076) TCGA-EI-6917-01 X 36379467 36379467 C T CXorf30 Silent p.F404F 0.59 TCGA-EI-6917-01 X 36379487 36379487 A G CXorf30 Missense_Mutation p.E411G 0.62 deleterious(0) probably_damaging(0.982) TCGA-EI-6917-01 X 37850327 37850327 C T CXorf27 Missense_Mutation p.R79C 0.60 tolerated(0.06) benign(0.069) TCGA-EI-6917-01 X 37967884 37967884 T C SYTL5 Missense_Mutation p.S478P 0.29 deleterious(0) probably_damaging(0.933) TCGA-EI-6917-01 X 38229107 38229107 G A OTC Missense_Mutation p.R92Q 0.44 deleterious(0) possibly_damaging(0.904) TCGA-EI-6917-01 X 40464996 40464996 C T ATP6AP2 Nonsense_Mutation p.R348* 0.64 TCGA-EI-6917-01 X 46359622 46359622 G A ZNF674 Missense_Mutation p.P468S 0.48 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 X 46502767 46502767 C T SLC9A7 Missense_Mutation p.R506H 0.50 tolerated(0.06) benign(0.12) TCGA-EI-6917-01 X 46713160 46713160 C T RP2 Missense_Mutation p.R118C 0.57 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 X 47272966 47272966 T C ZNF157 Silent p.R498R 0.55 TCGA-EI-6917-01 X 47444803 47444803 C T TIMP1 Intron 0.33 TCGA-EI-6917-01 X 47464450 47464450 C T SYN1 Missense_Mutation p.R234Q 0.46 tolerated(0.14) benign(0.115) TCGA-EI-6917-01 X 47774595 47774595 C A ZNF81 Missense_Mutation p.L184I 0.51 tolerated(0.3) benign(0.031) TCGA-EI-6917-01 X 48674977 48674977 C T HDAC6 Silent p.F576F 0.52 TCGA-EI-6917-01 X 48751021 48751021 C T TIMM17B Silent p.Q220Q 0.63 TCGA-EI-6917-01 X 48762313 48762313 G A SLC35A2 Silent p.Y291Y 0.14 TCGA-EI-6917-01 X 49071934 49071934 G T CACNA1F Silent p.I1113I 0.61 TCGA-EI-6917-01 X 49087762 49087762 C T CACNA1F Missense_Mutation p.D95N 0.38 deleterious(0) probably_damaging(0.981) TCGA-EI-6917-01 X 49598541 49598541 C A PAGE4 3'UTR 0.58 TCGA-EI-6917-01 X 49646760 49646760 C T USP27X 3'UTR 0.45 TCGA-EI-6917-01 X 49958928 49958928 C T AKAP4 Missense_Mutation p.E146K 0.41 tolerated(0.53) benign(0.004) TCGA-EI-6917-01 X 50052867 50052867 G A CCNB3 Silent p.E566E 0.55 TCGA-EI-6917-01 X 50213049 50213049 G A DGKK RNA 0.55 TCGA-EI-6917-01 X 51149807 51149807 C T CXorf67 5'UTR 0.64 TCGA-EI-6917-01 X 52842218 52842218 C A XAGE5 Missense_Mutation p.H43N 0.60 tolerated(0.33) benign(0.054) TCGA-EI-6917-01 X 53455492 53455492 G T RIBC1 Missense_Mutation p.R154I 0.63 deleterious(0) probably_damaging(0.959) TCGA-EI-6917-01 X 54957054 54957054 C T TRO Silent p.F1299F 0.50 TCGA-EI-6917-01 X 54971895 54971895 G A PFKFB1 Missense_Mutation p.R359C 0.55 probably_damaging(1) TCGA-EI-6917-01 X 55479721 55479721 C A MAGEH1 3'UTR 0.53 TCGA-EI-6917-01 X 55514105 55514105 C T USP51 Missense_Mutation p.R423Q 0.34 tolerated(0.12) benign(0.042) TCGA-EI-6917-01 X 57367776 57367776 G A FAAH2 Missense_Mutation p.R232Q 0.45 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 X 62857973 62857973 C T ARHGEF9 Missense_Mutation p.E496K 0.47 tolerated_low_confidence(0.07) benign(0.067) TCGA-EI-6917-01 X 62944504 62944504 C T ARHGEF9 Missense_Mutation p.D33N 0.70 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 X 63411366 63411366 G A AMER1 Nonsense_Mutation p.R601* 0.76 TCGA-EI-6917-01 X 64709048 64709048 G A ZC3H12B Missense_Mutation p.E123K 0.53 tolerated(0.06) benign(0.031) TCGA-EI-6917-01 X 64749628 64749628 C A LAS1L Missense_Mutation p.K215N 0.53 tolerated(0.07) possibly_damaging(0.517) TCGA-EI-6917-01 X 65474946 65474946 T C HEPH Missense_Mutation p.V932A 0.38 deleterious(0.03) possibly_damaging(0.701) TCGA-EI-6917-01 X 67944222 67944222 C A STARD8 Silent p.S1090S 0.65 TCGA-EI-6917-01 X 69282425 69282425 C T OTUD6A Silent p.R17R 0.50 TCGA-EI-6917-01 X 69366568 69366568 C T IGBP1 Missense_Mutation p.R190C 0.57 deleterious(0.02) possibly_damaging(0.825) TCGA-EI-6917-01 X 69420227 69420227 T G DGAT2L6 Missense_Mutation p.I130M 0.49 tolerated(0.08) benign(0.16) TCGA-EI-6917-01 X 69489722 69489722 C T ARR3 Silent p.F23F 0.54 TCGA-EI-6917-01 X 69902531 69902531 G T TEX11 Silent p.I398I 0.49 TCGA-EI-6917-01 X 70148013 70148013 C T SLC7A3 Missense_Mutation p.D268N 0.24 deleterious(0.04) possibly_damaging(0.479) TCGA-EI-6917-01 X 70328462 70328462 A C IL2RG Missense_Mutation p.F281V 0.55 tolerated(0.77) benign(0.002) TCGA-EI-6917-01 X 71358961 71358961 C A NHSL2 Silent p.A521A 0.60 TCGA-EI-6917-01 X 71428291 71428291 C T ERCC6L Missense_Mutation p.S109N 0.52 tolerated(0.28) benign(0.057) TCGA-EI-6917-01 X 71571686 71571686 A C HDAC8 Missense_Mutation p.F336L 0.55 tolerated(0.09) benign(0.003) TCGA-EI-6917-01 X 71830980 71830980 C T PHKA1 Silent p.E808E 0.56 TCGA-EI-6917-01 X 72224948 72224948 G T PABPC1L2B 3'UTR 0.41 TCGA-EI-6917-01 X 72433285 72433285 C A NAP1L2 Missense_Mutation p.K348N 0.44 deleterious(0) probably_damaging(0.998) TCGA-EI-6917-01 X 72674374 72674374 C T CDX4 Missense_Mutation p.R270C 0.54 tolerated(0.22) benign(0) TCGA-EI-6917-01 X 76938051 76938051 C T ATRX Silent p.T899T 0.17 TCGA-EI-6917-01 X 76939417 76939417 C T ATRX Missense_Mutation p.R444Q 0.30 benign(0.308) TCGA-EI-6917-01 X 77913267 77913267 C T ZCCHC5 Silent p.E217E 0.43 TCGA-EI-6917-01 X 83723714 83723714 A G HDX Silent p.S339S 0.10 TCGA-EI-6917-01 X 8565122 8565122 G A KAL1 Missense_Mutation p.S165L 0.46 tolerated(0.1) benign(0.015) TCGA-EI-6917-01 X 85906155 85906155 C T DACH2 Missense_Mutation p.L253F 0.54 tolerated(0.08) benign(0.076) TCGA-EI-6917-01 X 86877241 86877241 G A KLHL4 Missense_Mutation p.E319K 0.41 deleterious(0) probably_damaging(0.999) TCGA-EI-6917-01 X 86887299 86887299 G A KLHL4 Missense_Mutation p.A472T 0.47 deleterious(0.01) possibly_damaging(0.896) TCGA-EI-6917-01 X 88009636 88009636 G T CPXCR1 3'UTR 0.57 TCGA-EI-6917-01 X 88009698 88009698 T G CPXCR1 3'UTR 0.54 TCGA-EI-6917-01 X 89177188 89177188 G T TGIF2LX Missense_Mutation p.R35I 0.51 deleterious(0.03) benign(0.352) TCGA-EI-6917-01 X 91131925 91131925 G T PCDH11X Missense_Mutation p.R229I 0.47 deleterious(0) probably_damaging(0.953) TCGA-EI-6917-01 X 91134242 91134242 C T PCDH11X Silent p.F1001F 0.16 TCGA-EI-6917-01 X 92927440 92927440 C T NAP1L3 Silent p.R288R 0.44 TCGA-EI-6917-01 X 99551604 99551604 C T PCDH19 Missense_Mutation p.D1040N 0.53 deleterious_low_confidence(0.01) benign(0.003) TCGA-EI-6917-01 X 99662008 99662008 C T PCDH19 Missense_Mutation p.E530K 0.43 deleterious(0.02) probably_damaging(0.95) TCGA-EI-6917-01 X 99662161 99662161 C T PCDH19 Missense_Mutation p.D479N 0.45 deleterious(0) probably_damaging(1) TCGA-EI-6917-01 X 99662953 99662953 C T PCDH19 Missense_Mutation p.D215N 0.48 tolerated(0.21) possibly_damaging(0.71) TCGA-EI-6917-01 Y 14848120 14848120 G T USP9Y Missense_Mutation p.R321I 0.30 deleterious(0) possibly_damaging(0.549) TCGA-EI-6917-01 Y 14888670 14888670 A C USP9Y Missense_Mutation p.N839H 0.39 deleterious(0.01) benign(0.139) TCGA-EI-6917-01 Y 14923602 14923602 C T USP9Y Silent p.V1424V 0.33 TCGA-EI-6917-01 Y 15472360 15472360 C T UTY Silent p.R305R 0.47 TCGA-EI-6917-01 Y 4925489 4925489 G A PCDH11Y Missense_Mutation p.E209K 0.30 deleterious(0.05) benign(0.013) TCGA-EI-6917-01 Y 7172091 7172091 G A PRKY RNA 0.37 TCGA-EI-7002-01 10 119305214 119305214 G A EMX2 Missense_Mutation p.A160T 0.41 deleterious(0) probably_damaging(1) TCGA-EI-7002-01 10 13698784 13698784 G T FRMD4A Silent p.S935S 0.36 TCGA-EI-7002-01 10 26417393 26417393 G T MYO3A Nonsense_Mutation p.E730* 0.19 TCGA-EI-7002-01 10 31809758 31809758 G A ZEB1 Missense_Mutation p.A500T 0.65 tolerated(0.43) benign(0.002) TCGA-EI-7002-01 10 71690163 71690163 G A COL13A1 Missense_Mutation p.R502H 0.41 deleterious(0) probably_damaging(0.998) TCGA-EI-7002-01 11 117303919 117303919 C G DSCAML1 Missense_Mutation p.R1714P 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-EI-7002-01 11 1268168 1268168 C A MUC5B Missense_Mutation p.P3353Q 0.22 unknown(0) TCGA-EI-7002-01 11 14278201 14278201 T C SPON1 RNA 0.56 TCGA-EI-7002-01 11 22301091 22301091 A G ANO5 Missense_Mutation p.H841R 0.27 deleterious(0) probably_damaging(0.999) TCGA-EI-7002-01 11 33054271 33054271 A T DEPDC7 Missense_Mutation p.N399Y 0.57 deleterious(0.03) benign(0.27) TCGA-EI-7002-01 11 6221053 6221053 C T OR52W1 Silent p.T200T 0.28 TCGA-EI-7002-01 11 78380298 78380298 C T TENM4 Silent p.G2364G 0.23 TCGA-EI-7002-01 11 92715220 92715220 C T MTNR1B Silent p.N277N 0.40 TCGA-EI-7002-01 12 104474565 104474565 C T HCFC2 Missense_Mutation p.P242S 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-EI-7002-01 12 105255066 105255066 T C SLC41A2 Intron 0.37 TCGA-EI-7002-01 12 111748000 111748000 G A CUX2 Missense_Mutation p.G472S 0.52 tolerated(0.35) benign(0.004) TCGA-EI-7002-01 12 11244471 11244471 G A TAS2R43 Missense_Mutation p.H120Y 0.71 tolerated(0.62) benign(0.005) TCGA-EI-7002-01 12 121883200 121883200 C T KDM2B Missense_Mutation p.V661M 0.42 deleterious(0.01) probably_damaging(0.974) TCGA-EI-7002-01 12 129294600 129294600 T C SLC15A4 Missense_Mutation p.K300R 0.43 tolerated(0.36) benign(0.291) TCGA-EI-7002-01 12 14982279 14982279 T A ART4 3'UTR 0.38 TCGA-EI-7002-01 12 20864341 20864341 T C SLCO1C1 Silent p.S142S 0.17 TCGA-EI-7002-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.44 deleterious(0) possibly_damaging(0.479) TCGA-EI-7002-01 12 27787921 27787921 C A PPFIBP1 Missense_Mutation p.A48D 0.27 deleterious(0.01) possibly_damaging(0.51) TCGA-EI-7002-01 12 65633793 65633793 T C LEMD3 Missense_Mutation p.M669T 0.53 deleterious(0) probably_damaging(0.916) TCGA-EI-7002-01 12 66742559 66742559 C G GRIP1 3'UTR 0.18 TCGA-EI-7002-01 12 7083838 7083838 G A EMG1 Missense_Mutation p.R131H 0.31 deleterious(0) TCGA-EI-7002-01 12 7556417 7556417 T C CD163L1 Silent p.G374G 0.31 TCGA-EI-7002-01 12 81007592 81007592 G T PTPRQ Missense_Mutation p.G1710C 0.43 deleterious(0) probably_damaging(1) TCGA-EI-7002-01 13 20277328 20277328 C T PSPC1 Missense_Mutation p.R520H 0.14 deleterious(0) benign(0.277) TCGA-EI-7002-01 13 23905608 23905608 A C SACS Missense_Mutation p.L4136R 0.22 probably_damaging(0.996) TCGA-EI-7002-01 13 38158978 38158978 G T POSTN Missense_Mutation p.T328K 0.50 tolerated(0.14) possibly_damaging(0.593) TCGA-EI-7002-01 13 46357601 46357601 G C SIAH3 Missense_Mutation p.Q243E 0.10 tolerated(0.12) probably_damaging(0.993) TCGA-EI-7002-01 13 49281668 49281668 C T CYSLTR2 Missense_Mutation p.R239W 0.39 deleterious(0) possibly_damaging(0.804) TCGA-EI-7002-01 13 50204615 50204615 C T ARL11 Missense_Mutation p.A11V 0.48 tolerated(0.24) benign(0.011) TCGA-EI-7002-01 13 58209033 58209033 G A PCDH17 Missense_Mutation p.V785M 0.30 deleterious(0.01) possibly_damaging(0.475) TCGA-EI-7002-01 14 102463483 102463483 C T DYNC1H1 Missense_Mutation p.R1226W 0.27 possibly_damaging(0.773) TCGA-EI-7002-01 14 106573339 106573339 G T IGHV3-11 Missense_Mutation p.S82Y 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.533) TCGA-EI-7002-01 14 106993920 106993920 G T IGHV3-48 Missense_Mutation p.S82Y 0.35 deleterious_low_confidence(0.01) benign(0.235) TCGA-EI-7002-01 14 33201807 33201807 G T AKAP6 Splice_Site p.X1049_splice 0.84 TCGA-EI-7002-01 14 37131290 37131290 G C PAX9 5'UTR 0.31 TCGA-EI-7002-01 14 64194048 64194048 G A SGPP1 Silent p.P205P 1.00 TCGA-EI-7002-01 14 74004436 74004436 T C ACOT1 Missense_Mutation p.V104A 0.14 deleterious(0) possibly_damaging(0.734) TCGA-EI-7002-01 14 89131752 89131752 G A EML5 Missense_Mutation p.A1069V 0.42 tolerated(0.07) benign(0.261) TCGA-EI-7002-01 15 31283779 31283779 C T MTMR10 5'UTR 0.58 TCGA-EI-7002-01 15 48512853 48512853 C A SLC12A1 Nonsense_Mutation p.S148* 0.55 TCGA-EI-7002-01 15 53081197 53081197 T C ONECUT1 Silent p.K295K 0.15 TCGA-EI-7002-01 15 57925855 57925855 A C GCOM1 Missense_Mutation p.K283N 0.83 deleterious(0.02) possibly_damaging(0.549) TCGA-EI-7002-01 15 64680109 64680109 G T TRIP4 Missense_Mutation p.C16F 0.46 tolerated(0.12) probably_damaging(0.928) TCGA-EI-7002-01 15 67528341 67528341 G A AAGAB Missense_Mutation p.P143S 0.75 deleterious(0) probably_damaging(0.999) TCGA-EI-7002-01 15 84527556 84527556 A G ADAMTSL3 Missense_Mutation p.S256G 0.25 tolerated(0.61) probably_damaging(0.993) TCGA-EI-7002-01 15 90764234 90764234 G C SEMA4B Silent p.L168L 0.14 TCGA-EI-7002-01 16 23091449 23091449 G T USP31 Missense_Mutation p.P665H 0.21 deleterious(0) probably_damaging(1) TCGA-EI-7002-01 16 2334789 2334789 G A ABCA3 Missense_Mutation p.R1232C 0.67 deleterious(0.03) possibly_damaging(0.892) TCGA-EI-7002-01 16 23706634 23706635 - A ERN2 Frame_Shift_Ins p.Q611Sfs*7 0.57 TCGA-EI-7002-01 16 2522561 2522561 C T NTN3 Missense_Mutation p.R287C 0.33 deleterious(0) probably_damaging(0.999) TCGA-EI-7002-01 16 28906176 28906176 A T ATP2A1 Missense_Mutation p.T441S 0.78 deleterious(0.01) probably_damaging(0.99) TCGA-EI-7002-01 16 4016499 4016499 C T ADCY9 Silent p.T1113T 0.32 TCGA-EI-7002-01 16 4847789 4847789 C T ROGDI Missense_Mutation p.V250M 0.65 deleterious(0.03) possibly_damaging(0.847) TCGA-EI-7002-01 16 58712341 58712341 G A SLC38A7 Silent p.S169S 0.29 TCGA-EI-7002-01 16 66643699 66643699 G T CMTM3 Intron 0.36 TCGA-EI-7002-01 16 88495531 88495531 C T ZNF469 Silent p.N551N 0.37 TCGA-EI-7002-01 16 89986454 89986454 T A MC1R Missense_Mutation p.L263H 0.28 deleterious(0) probably_damaging(0.995) TCGA-EI-7002-01 16 89986455 89986455 C A MC1R Silent p.L263L 0.27 TCGA-EI-7002-01 17 21731063 21731063 C T UBBP4 Missense_Mutation p.A122V 0.13 deleterious(0.03) benign(0.032) TCGA-EI-7002-01 17 29221959 29221959 G C ATAD5 3'UTR 0.47 TCGA-EI-7002-01 17 56692641 56692641 C T TEX14 Missense_Mutation p.S284N 0.19 tolerated(0.06) possibly_damaging(0.461) TCGA-EI-7002-01 17 61972851 61972851 G T CSH1 Silent p.G146G 0.07 TCGA-EI-7002-01 17 648333 648333 A G GEMIN4 Missense_Mutation p.C984R 0.13 deleterious(0) probably_damaging(0.994) TCGA-EI-7002-01 17 73908351 73908351 G T FBF1 Missense_Mutation p.S1080R 0.39 tolerated(0.37) probably_damaging(0.986) TCGA-EI-7002-01 17 74079635 74079635 C G EXOC7 3'UTR 0.32 TCGA-EI-7002-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.80 deleterious(0) probably_damaging(0.997) TCGA-EI-7002-01 17 76565606 76565606 G A DNAH17 Nonsense_Mutation p.R350* 0.57 TCGA-EI-7002-01 18 21660642 21660642 A G TTC39C Missense_Mutation p.K185R 0.08 tolerated(0.68) benign(0.013) TCGA-EI-7002-01 18 45368211 45368211 G C SMAD2 Nonsense_Mutation p.S464* 0.75 TCGA-EI-7002-01 18 57103324 57103324 C T CCBE1 Missense_Mutation p.R346H 0.76 deleterious(0) probably_damaging(0.998) TCGA-EI-7002-01 18 70423376 70423376 C A NETO1 Missense_Mutation p.C292F 0.31 deleterious(0) probably_damaging(0.999) TCGA-EI-7002-01 18 9886744 9886744 C A TXNDC2 Missense_Mutation p.P90T 0.82 tolerated(0.18) possibly_damaging(0.775) TCGA-EI-7002-01 19 12298073 12298073 A G ZNF136 Missense_Mutation p.T294A 0.09 tolerated(0.11) benign(0.086) TCGA-EI-7002-01 19 15230266 15230266 G T ILVBL Missense_Mutation p.Q293K 0.31 deleterious(0) probably_damaging(0.998) TCGA-EI-7002-01 19 2717449 2717449 A T DIRAS1 Missense_Mutation p.V119E 0.15 deleterious(0) probably_damaging(0.985) TCGA-EI-7002-01 19 36595676 36595676 T C WDR62 Missense_Mutation p.S1440P 0.09 deleterious(0.02) probably_damaging(0.964) TCGA-EI-7002-01 19 37100786 37100786 C A ZNF382 Intron 0.38 TCGA-EI-7002-01 19 3964631 3964631 T G DAPK3 Missense_Mutation p.K141Q 0.22 deleterious(0.01) possibly_damaging(0.79) TCGA-EI-7002-01 19 4362657 4362657 C G SH3GL1 Missense_Mutation p.E269Q 0.31 tolerated(0.51) benign(0.048) TCGA-EI-7002-01 19 48988943 48988943 C T LMTK3 3'UTR 0.83 TCGA-EI-7002-01 19 53911531 53911531 A G ZNF765 Silent p.K241K 0.81 TCGA-EI-7002-01 19 55481440 55481440 C T NLRP2 Silent p.S19S 0.09 TCGA-EI-7002-01 19 7806896 7806896 G A CD209 3'UTR 0.43 TCGA-EI-7002-01 1 103462680 103462680 C A COL11A1 Missense_Mutation p.G733C 0.41 unknown(0) TCGA-EI-7002-01 1 111739829 111739829 C A DENND2D Missense_Mutation p.S158I 0.40 deleterious(0) probably_damaging(1) TCGA-EI-7002-01 1 152192380 152192380 C T HRNR Silent p.E575E 0.20 TCGA-EI-7002-01 1 152283678 152283678 G A FLG Silent p.D1228D 0.53 TCGA-EI-7002-01 1 152484323 152484323 T A LCE5A Missense_Mutation p.S105T 0.27 tolerated_low_confidence(0.86) unknown(0) TCGA-EI-7002-01 1 155736476 155736476 C T GON4L Missense_Mutation p.E930K 0.19 deleterious(0.04) probably_damaging(0.969) TCGA-EI-7002-01 1 168044773 168044773 G T DCAF6 3'UTR 0.22 TCGA-EI-7002-01 1 182829290 182829290 G T DHX9 Missense_Mutation p.A435S 0.20 deleterious(0.01) probably_damaging(0.932) TCGA-EI-7002-01 1 202127461 202127461 C A PTPN7 Intron 0.20 TCGA-EI-7002-01 1 214813297 214813314 ATCTTCAAGAAAAAATAA - CENPF In_Frame_Del p.L540_N545del 0.12 TCGA-EI-7002-01 1 216692569 216692569 C A ESRRG Missense_Mutation p.V365L 0.19 tolerated(0.06) probably_damaging(0.991) TCGA-EI-7002-01 1 232564263 232564263 G A SIPA1L2 Missense_Mutation p.T1435I 0.23 deleterious(0.01) benign(0.061) TCGA-EI-7002-01 1 236754212 236754212 G T HEATR1 Missense_Mutation p.H489N 0.18 deleterious(0) probably_damaging(0.99) TCGA-EI-7002-01 1 237670113 237670113 C T RYR2 Missense_Mutation p.P906L 0.34 benign(0.008) TCGA-EI-7002-01 1 2523040 2523040 G T MMEL1 Silent p.A732A 0.32 TCGA-EI-7002-01 1 27239948 27239948 T G NR0B2 Missense_Mutation p.S162R 0.19 deleterious(0) probably_damaging(0.94) TCGA-EI-7002-01 1 32207730 32207730 G A BAI2 Silent p.S447S 0.90 TCGA-EI-7002-01 1 3542327 3542327 A C TPRG1L Missense_Mutation p.Q115P 0.38 tolerated(0.07) possibly_damaging(0.53) TCGA-EI-7002-01 1 93303157 93303157 T C RPL5 Silent p.S224S 0.14 TCGA-EI-7002-01 20 34241372 34241372 T C RBM12 Missense_Mutation p.R625G 0.20 deleterious(0.01) possibly_damaging(0.891) TCGA-EI-7002-01 20 37580690 37580690 G C FAM83D Missense_Mutation p.A459P 0.54 deleterious(0.01) possibly_damaging(0.857) TCGA-EI-7002-01 20 3785308 3785308 A G CDC25B Missense_Mutation p.E528G 0.08 deleterious(0) possibly_damaging(0.83) TCGA-EI-7002-01 20 42935226 42935226 G C FITM2 3'UTR 0.13 TCGA-EI-7002-01 20 43851702 43851702 C T SEMG2 Nonsense_Mutation p.R477* 0.19 TCGA-EI-7002-01 20 57273756 57273756 C T NPEPL1 Missense_Mutation p.T175I 0.17 deleterious(0.03) benign(0.011) TCGA-EI-7002-01 21 38390451 38390451 G T RIPPLY3 Missense_Mutation p.G173C 0.59 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-EI-7002-01 21 46876735 46876735 G A COL18A1 Intron 1.00 TCGA-EI-7002-01 21 47570373 47570373 A G FTCD Missense_Mutation p.S235P 0.10 deleterious(0) probably_damaging(0.998) TCGA-EI-7002-01 22 18653540 18653540 G T USP18 Missense_Mutation p.L248F 0.19 deleterious(0.01) possibly_damaging(0.739) TCGA-EI-7002-01 22 19789706 19789706 C T GNB1L Missense_Mutation p.G184S 0.41 deleterious(0) probably_damaging(0.994) TCGA-EI-7002-01 22 22673115 22673115 T C IGLV5-52 Missense_Mutation p.L10P 0.08 deleterious(0) probably_damaging(0.954) TCGA-EI-7002-01 22 23063574 23063574 C T IGLV3-19 Missense_Mutation p.T94I 0.25 deleterious(0) possibly_damaging(0.758) TCGA-EI-7002-01 22 26286756 26286756 C T MYO18B Missense_Mutation p.R1450C 0.39 deleterious(0) probably_damaging(0.969) TCGA-EI-7002-01 22 28293864 28293864 C A PITPNB Missense_Mutation p.V72L 0.57 tolerated(0.33) benign(0.038) TCGA-EI-7002-01 22 29695788 29695788 G A EWSR1 Missense_Mutation p.M631I 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-EI-7002-01 22 41075567 41075567 C T MCHR1 Nonsense_Mutation p.Q40* 0.23 TCGA-EI-7002-01 2 120643426 120643426 G T PTPN4 Nonsense_Mutation p.E215* 0.21 TCGA-EI-7002-01 2 172951536 172951536 G A DLX1 Silent p.P156P 0.68 TCGA-EI-7002-01 2 187627687 187627687 A T FAM171B 3'UTR 0.85 TCGA-EI-7002-01 2 220090197 220090197 G A ATG9A Missense_Mutation p.P104S 0.64 tolerated(0.27) benign(0.003) TCGA-EI-7002-01 2 27564873 27564873 C G GTF3C2 Missense_Mutation p.S266T 0.21 tolerated(0.33) benign(0.033) TCGA-EI-7002-01 2 5836159 5836159 G A SOX11 3'UTR 0.88 TCGA-EI-7002-01 3 121100222 121100222 A T STXBP5L Silent p.A834A 0.43 TCGA-EI-7002-01 3 129269637 129269637 A T H1FOO Missense_Mutation p.K264N 0.22 deleterious(0.01) benign(0.176) TCGA-EI-7002-01 3 130716557 130716557 T C ATP2C1 Missense_Mutation p.I818T 0.19 tolerated(0.58) benign(0.001) TCGA-EI-7002-01 3 140140037 140140037 C T CLSTN2 Silent p.Y236Y 0.47 TCGA-EI-7002-01 3 148939685 148939685 G A CP 5'UTR 0.36 TCGA-EI-7002-01 3 51434733 51434733 T A RBM15B 3'UTR 0.34 TCGA-EI-7002-01 3 54930829 54930829 C T CACNA2D3 Missense_Mutation p.P767L 0.28 deleterious(0) probably_damaging(0.999) TCGA-EI-7002-01 3 54930830 54930830 T C CACNA2D3 Silent p.P767P 0.28 TCGA-EI-7002-01 3 89259429 89259429 C G EPHA3 Silent p.A191A 0.43 TCGA-EI-7002-01 4 117220895 117220895 A G MTRNR2L13 5'UTR 0.10 TCGA-EI-7002-01 4 175225442 175225442 A T CEP44 Missense_Mutation p.E143D 0.61 tolerated(0.07) benign(0.188) TCGA-EI-7002-01 4 55561907 55561907 C A KIT Missense_Mutation p.N99K 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-EI-7002-01 4 87749260 87749260 G A SLC10A6 Missense_Mutation p.A216V 0.81 tolerated(0.15) benign(0.011) TCGA-EI-7002-01 4 89649726 89649726 C T FAM13A Silent p.E1010E 0.57 TCGA-EI-7002-01 4 91549221 91549221 G T CCSER1 Missense_Mutation p.R590S 0.91 deleterious(0.02) probably_damaging(0.996) TCGA-EI-7002-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.63 TCGA-EI-7002-01 5 112175766 112175766 C - APC Frame_Shift_Del p.T1493Rfs*14 0.18 TCGA-EI-7002-01 5 115336143 115336143 C T AQPEP Missense_Mutation p.A510V 0.18 tolerated(1) benign(0.005) TCGA-EI-7002-01 5 121787074 121787074 C T SNCAIP Silent p.L844L 0.22 TCGA-EI-7002-01 5 128864211 128864211 A C ADAMTS19 Splice_Site p.X385_splice 0.66 TCGA-EI-7002-01 5 13770911 13770911 G A DNAH5 Silent p.G3184G 0.33 TCGA-EI-7002-01 5 140514942 140514942 C T PCDHB5 5'UTR 0.63 TCGA-EI-7002-01 5 140515772 140515772 C T PCDHB5 Silent p.P252P 0.12 TCGA-EI-7002-01 5 140720595 140720595 A T PCDHGA2 Missense_Mutation p.D686V 0.17 deleterious_low_confidence(0.01) benign(0.036) TCGA-EI-7002-01 5 149562432 149562432 C A CDX1 Silent p.R183R 0.67 TCGA-EI-7002-01 5 154397148 154397148 C A KIF4B 3'UTR 0.24 TCGA-EI-7002-01 5 169309556 169309556 C T FAM196B Splice_Site p.X449_splice 0.23 TCGA-EI-7002-01 5 171305113 171305113 C G FBXW11 Silent p.L270L 0.24 TCGA-EI-7002-01 5 175812294 175812294 T C NOP16 Silent p.K107K 0.10 TCGA-EI-7002-01 5 176687145 176687145 A T NSD1 Missense_Mutation p.S1708C 0.30 deleterious(0) probably_damaging(0.987) TCGA-EI-7002-01 5 178360019 178360019 G A ZFP2 3'UTR 0.07 TCGA-EI-7002-01 5 74712808 74712808 C T COL4A3BP Missense_Mutation p.E372K 0.13 deleterious(0) probably_damaging(0.999) TCGA-EI-7002-01 5 79033266 79033266 C T CMYA5 Missense_Mutation p.A2893V 0.22 benign(0.231) TCGA-EI-7002-01 5 79089367 79089367 C T CMYA5 Missense_Mutation p.A3966V 0.22 possibly_damaging(0.655) TCGA-EI-7002-01 6 105581445 105581445 T A BVES Missense_Mutation p.Y3F 0.24 tolerated_low_confidence(0.49) benign(0.001) TCGA-EI-7002-01 6 116938274 116938274 G T RSPH4A Missense_Mutation p.R163L 0.23 tolerated_low_confidence(0.19) benign(0) TCGA-EI-7002-01 6 151936720 151936720 A C CCDC170 Missense_Mutation p.N618T 0.59 tolerated(0.05) benign(0.026) TCGA-EI-7002-01 6 152751783 152751783 T G SYNE1 Missense_Mutation p.Q1508P 0.26 benign(0.229) TCGA-EI-7002-01 6 163984542 163984542 G A QKI Missense_Mutation p.R242H 0.61 tolerated(0.06) probably_damaging(0.935) TCGA-EI-7002-01 6 163987818 163987818 G A QKI Missense_Mutation p.A334T 0.33 tolerated_low_confidence(0.49) benign(0.005) TCGA-EI-7002-01 6 166571895 166571895 C T T Missense_Mutation p.A406T 0.31 tolerated(0.88) benign(0.002) TCGA-EI-7002-01 6 29012669 29012669 A G OR2W1 Missense_Mutation p.V95A 0.33 tolerated(0.59) benign(0.002) TCGA-EI-7002-01 6 29580361 29580361 G A GABBR1 Missense_Mutation p.R533W 0.50 deleterious(0) probably_damaging(1) TCGA-EI-7002-01 6 30457285 30457285 T C HLA-E 5'UTR 0.18 TCGA-EI-7002-01 6 32823927 32823927 G A PSMB9 Missense_Mutation p.A25T 0.20 deleterious(0) probably_damaging(0.987) TCGA-EI-7002-01 6 35046415 35046415 G A ANKS1A Silent p.A755A 0.57 TCGA-EI-7002-01 6 35209375 35209375 C G SCUBE3 Missense_Mutation p.N417K 0.40 tolerated(0.41) benign(0.04) TCGA-EI-7002-01 6 49489368 49489368 T G GLYATL3 Missense_Mutation p.S108R 0.32 tolerated(0.07) benign(0.004) TCGA-EI-7002-01 6 56417663 56417663 G T DST Missense_Mutation p.N2686K 0.22 possibly_damaging(0.566) TCGA-EI-7002-01 6 56966782 56966782 C T ZNF451 Intron 0.30 TCGA-EI-7002-01 6 74477828 74477828 G A CD109 Missense_Mutation p.M516I 0.18 tolerated(0.08) benign(0) TCGA-EI-7002-01 6 75901978 75901978 G A COL12A1 Missense_Mutation p.T95I 0.22 benign(0.01) TCGA-EI-7002-01 6 75953509 75953509 G A COX7A2 Missense_Mutation p.A13V 0.66 deleterious_low_confidence(0.03) benign(0.022) TCGA-EI-7002-01 6 99951735 99951735 A C USP45 Nonsense_Mutation p.Y128* 0.84 TCGA-EI-7002-01 7 103029481 103029481 C G SLC26A5 Silent p.L496L 0.17 TCGA-EI-7002-01 7 108205529 108205529 T A THAP5 Missense_Mutation p.K98N 0.22 tolerated(0.4) benign(0.004) TCGA-EI-7002-01 7 126249487 126249487 G T GRM8 Missense_Mutation p.Q475K 0.08 tolerated(0.05) benign(0.194) TCGA-EI-7002-01 7 134346316 134346316 G T BPGM Missense_Mutation p.E19D 0.13 tolerated(0.06) benign(0.038) TCGA-EI-7002-01 7 138400539 138400539 G A ATP6V0A4 Missense_Mutation p.R743W 0.23 deleterious(0) probably_damaging(1) TCGA-EI-7002-01 7 143424680 143424680 A C FAM115C 3'Flank 0.25 TCGA-EI-7002-01 7 156752598 156752598 A T NOM1 Missense_Mutation p.K454N 0.35 deleterious(0.02) benign(0.145) TCGA-EI-7002-01 7 156803100 156803100 G T MNX1 5'UTR 0.38 TCGA-EI-7002-01 7 158698701 158698701 G A WDR60 Missense_Mutation p.R460K 0.11 tolerated(0.23) benign(0.002) TCGA-EI-7002-01 7 21721238 21721238 A T DNAH11 Silent p.T1806T 0.10 TCGA-EI-7002-01 7 2984159 2984159 T C CARD11 Missense_Mutation p.H124R 0.12 tolerated(0.42) possibly_damaging(0.573) TCGA-EI-7002-01 7 37955827 37955827 G A SFRP4 Missense_Mutation p.R105C 0.41 deleterious(0.01) probably_damaging(0.985) TCGA-EI-7002-01 7 44268439 44268439 G A CAMK2B Missense_Mutation p.P475L 0.79 tolerated_low_confidence(0.16) benign(0.002) TCGA-EI-7002-01 7 64863322 64863322 A T ZNF92 Missense_Mutation p.I99L 0.41 tolerated(0.08) benign(0.053) TCGA-EI-7002-01 7 83590882 83590882 C T SEMA3A Missense_Mutation p.M707I 0.22 tolerated(0.14) benign(0.114) TCGA-EI-7002-01 8 139164012 139164012 T C FAM135B Silent p.E902E 0.13 TCGA-EI-7002-01 8 22548844 22548844 G A EGR3 Silent p.I102I 0.69 TCGA-EI-7002-01 8 3443753 3443753 T C CSMD1 Missense_Mutation p.E376G 0.18 possibly_damaging(0.615) TCGA-EI-7002-01 8 48802924 48802924 G T PRKDC Missense_Mutation p.T1321K 0.16 benign(0.02) TCGA-EI-7002-01 8 49987869 49987869 G T C8orf22 3'UTR 0.17 TCGA-EI-7002-01 8 51449351 51449351 C T SNTG1 Silent p.P221P 0.06 TCGA-EI-7002-01 8 55539111 55539111 C T RP1 Missense_Mutation p.T890I 0.19 deleterious(0.05) benign(0.104) TCGA-EI-7002-01 9 100258129 100258129 G T TDRD7 Missense_Mutation p.M1087I 0.32 deleterious(0.01) probably_damaging(0.912) TCGA-EI-7002-01 9 132501928 132501928 C G PTGES Missense_Mutation p.A141P 0.34 deleterious(0) probably_damaging(0.994) TCGA-EI-7002-01 9 134165688 134165688 C T PPAPDC3 Missense_Mutation p.R102W 0.62 deleterious(0) possibly_damaging(0.603) TCGA-EI-7002-01 9 141107625 141107626 - A FAM157B RNA 0.17 TCGA-EI-7002-01 9 14720125 14720125 C G CER1 Missense_Mutation p.G256A 0.25 tolerated(0.07) possibly_damaging(0.787) TCGA-EI-7002-01 9 15657197 15657197 T C CCDC171 Missense_Mutation p.F299L 0.27 deleterious(0.04) possibly_damaging(0.542) TCGA-EI-7002-01 9 19361859 19361859 C G DENND4C Missense_Mutation p.L1759V 0.10 deleterious(0.04) benign(0.214) TCGA-EI-7002-01 9 32634645 32634645 C A TAF1L Missense_Mutation p.W311C 0.19 deleterious(0) probably_damaging(0.993) TCGA-EI-7002-01 9 32634660 32634660 G C TAF1L Missense_Mutation p.S306R 0.18 tolerated(0.5) benign(0.04) TCGA-EI-7002-01 9 39085569 39085569 C T CNTNAP3 Intron 0.27 TCGA-EI-7002-01 9 86617749 86617749 T G RMI1 Silent p.L616L 0.16 TCGA-EI-7002-01 9 90344505 90344505 C G CTSL Nonsense_Mutation p.Y213* 0.29 TCGA-EI-7002-01 X 108619182 108619182 A T GUCY2F Silent p.I1091I 0.08 TCGA-EI-7002-01 X 129148161 129148161 G A BCORL1 Silent p.G471G 0.88 TCGA-EI-7002-01 X 150911594 150911594 G T CNGA2 Missense_Mutation p.D207Y 1.00 deleterious(0) probably_damaging(1) TCGA-EI-7002-01 X 24690699 24690699 T G PCYT1B Missense_Mutation p.Q17H 0.27 tolerated_low_confidence(0.07) benign(0.065) TCGA-EI-7002-01 X 25028403 25028403 G T ARX Missense_Mutation p.L365M 0.21 deleterious(0) possibly_damaging(0.9) TCGA-EI-7002-01 X 9912693 9912693 G A SHROOM2 Missense_Mutation p.E1442K 0.90 deleterious(0.02) benign(0.18) TCGA-EI-7004-01 10 18835069 18835069 C T NSUN6 Silent p.P401P 0.43 TCGA-EI-7004-01 10 50025430 50025430 C T WDFY4 Silent p.A1827A 0.24 TCGA-EI-7004-01 10 51562451 51562451 G A MSMB 3'UTR 0.40 TCGA-EI-7004-01 11 103909372 103909372 T C DDI1 3'UTR 0.32 TCGA-EI-7004-01 11 108218045 108218045 A G ATM Missense_Mutation p.N2875S 0.28 deleterious(0) probably_damaging(1) TCGA-EI-7004-01 11 111177146 111177146 C A COLCA2 5'UTR 0.45 TCGA-EI-7004-01 11 18267543 18267543 G T SAA2 Silent p.I48I 0.07 TCGA-EI-7004-01 11 1861788 1861788 C A TNNI2 Missense_Mutation p.L30M 0.40 deleterious(0.04) probably_damaging(0.982) TCGA-EI-7004-01 11 18636587 18636587 T C SPTY2D1 Missense_Mutation p.I412V 0.22 tolerated(0.38) benign(0) TCGA-EI-7004-01 11 46678660 46678660 G A ATG13 Missense_Mutation p.R172H 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-EI-7004-01 11 47470535 47470535 C T RAPSN 5'UTR 0.16 TCGA-EI-7004-01 11 48328099 48328099 G T OR4S1 Nonsense_Mutation p.E109* 0.34 TCGA-EI-7004-01 11 5080116 5080116 C A OR52E2 Missense_Mutation p.V248L 0.31 deleterious(0) probably_damaging(0.948) TCGA-EI-7004-01 11 61957716 61957716 C A SCGB1D1 5'UTR 0.28 TCGA-EI-7004-01 11 65983615 65983615 C T PACS1 Missense_Mutation p.A229V 0.29 tolerated(0.07) benign(0.056) TCGA-EI-7004-01 11 75139589 75139589 A G KLHL35 Missense_Mutation p.Y322H 0.17 tolerated(0.05) unknown(0) TCGA-EI-7004-01 12 122219184 122219184 A G TMEM120B 3'UTR 0.23 TCGA-EI-7004-01 12 123351649 123351649 G A VPS37B 3'UTR 0.15 TCGA-EI-7004-01 12 132328570 132328570 G A MMP17 Silent p.A304A 0.42 TCGA-EI-7004-01 12 42836514 42836514 G A PPHLN1 Missense_Mutation p.E366K 0.35 tolerated_low_confidence(1) benign(0) TCGA-EI-7004-01 12 53563885 53563885 C T CSAD Missense_Mutation p.E252K 0.32 deleterious(0.02) benign(0.052) TCGA-EI-7004-01 12 68689117 68689117 G T MDM1 Missense_Mutation p.R688S 0.21 deleterious(0) probably_damaging(0.964) TCGA-EI-7004-01 12 7843228 7843228 G C GDF3 Missense_Mutation p.S114C 0.20 deleterious(0) probably_damaging(0.949) TCGA-EI-7004-01 13 101776991 101776991 C A NALCN Silent p.L720L 0.08 TCGA-EI-7004-01 14 23859447 23859447 G A MYH6 Missense_Mutation p.T1184M 0.23 deleterious(0.03) probably_damaging(0.93) TCGA-EI-7004-01 14 23876313 23876313 G A MYH6 Silent p.P40P 0.32 TCGA-EI-7004-01 14 29236614 29236614 C T FOXG1 Silent p.H43H 0.17 TCGA-EI-7004-01 14 69256184 69256184 A C ZFP36L1 3'UTR 0.40 TCGA-EI-7004-01 14 74824762 74824762 C T VRTN Missense_Mutation p.R426C 0.20 tolerated(0.11) benign(0.004) TCGA-EI-7004-01 15 23931591 23931591 G A NDN Silent p.Y258Y 0.20 TCGA-EI-7004-01 15 48441410 48441410 C T MYEF2 Missense_Mutation p.G513R 0.39 deleterious(0.01) probably_damaging(0.925) TCGA-EI-7004-01 15 75890860 75890860 G T SNUPN Missense_Mutation p.Q308K 0.33 deleterious(0.04) possibly_damaging(0.566) TCGA-EI-7004-01 15 85164942 85164942 G A ZSCAN2 Missense_Mutation p.E506K 0.16 tolerated(0.1) benign(0.096) TCGA-EI-7004-01 16 20492161 20492161 C T ACSM2A Missense_Mutation p.S476L 0.27 tolerated(0.05) benign(0.051) TCGA-EI-7004-01 16 20492235 20492235 C T ACSM2A Nonsense_Mutation p.R501* 0.18 TCGA-EI-7004-01 16 3639900 3639900 C T SLX4 Missense_Mutation p.E1247K 0.23 deleterious(0) probably_damaging(0.913) TCGA-EI-7004-01 16 80654799 80654799 C T CDYL2 Missense_Mutation p.A290T 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-EI-7004-01 16 8987864 8987864 G C USP7 Missense_Mutation p.I1100M 0.10 deleterious(0) probably_damaging(1) TCGA-EI-7004-01 17 33454192 33454192 T C FNDC8 Missense_Mutation p.L114P 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EI-7004-01 17 38240925 38240925 C T THRA Missense_Mutation p.R145W 0.17 deleterious(0) possibly_damaging(0.796) TCGA-EI-7004-01 17 45299140 45299140 G A MYL4 Missense_Mutation p.V136M 0.23 deleterious(0.03) possibly_damaging(0.745) TCGA-EI-7004-01 17 56492812 56492812 C - RNF43 Frame_Shift_Del p.E43Nfs*8 0.39 TCGA-EI-7004-01 17 56572450 56572450 G A MTMR4 Missense_Mutation p.T1018M 0.22 tolerated(0.11) benign(0.185) TCGA-EI-7004-01 18 28598133 28598133 C T DSC3 Nonsense_Mutation p.W389* 0.27 TCGA-EI-7004-01 18 3456597 3456597 A C TGIF1 Intron 0.16 TCGA-EI-7004-01 18 70534552 70534552 G A NETO1 5'UTR 0.39 TCGA-EI-7004-01 19 3478452 3478452 C T C19orf77 Silent p.T68T 0.51 TCGA-EI-7004-01 19 42731778 42731778 C T ZNF526 3'UTR 0.40 TCGA-EI-7004-01 19 44112098 44112098 G A ZNF428 Missense_Mutation p.R80C 0.32 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-EI-7004-01 19 45735087 45735087 C T EXOC3L2 Silent p.E8E 0.12 TCGA-EI-7004-01 19 4714260 4714260 G A DPP9 Missense_Mutation p.P49L 0.46 tolerated(0.27) benign(0.013) TCGA-EI-7004-01 19 49147822 49147822 A G CA11 Silent p.P49P 0.30 TCGA-EI-7004-01 19 50364753 50364753 C T PNKP Silent p.T467T 0.19 TCGA-EI-7004-01 19 52216668 52216668 G A HAS1 3'UTR 0.27 TCGA-EI-7004-01 19 55401061 55401061 C T FCAR Silent p.A232A 0.22 TCGA-EI-7004-01 19 57134552 57134552 T C ZNF71 3'UTR 0.34 TCGA-EI-7004-01 19 57868031 57868031 C A ZNF304 Missense_Mutation p.A265D 0.14 tolerated(0.54) possibly_damaging(0.61) TCGA-EI-7004-01 19 58601295 58601295 G T ZSCAN18 Missense_Mutation p.P170T 0.13 deleterious(0) probably_damaging(1) TCGA-EI-7004-01 19 9088120 9088120 G T MUC16 Nonsense_Mutation p.S1232* 0.23 TCGA-EI-7004-01 1 155531918 155531918 A C ASH1L Intron 0.22 TCGA-EI-7004-01 1 177001836 177001836 C T ASTN1 Silent p.V207V 0.12 TCGA-EI-7004-01 1 196879468 196879468 C T CFHR4 Missense_Mutation p.T285M 0.41 tolerated(0.25) benign(0) TCGA-EI-7004-01 1 27673928 27673928 G A SYTL1 Missense_Mutation p.V70M 0.39 tolerated(0.12) benign(0.102) TCGA-EI-7004-01 1 37267370 37267370 C T GRIK3 3'UTR 0.41 TCGA-EI-7004-01 1 57173591 57173591 A G PRKAA2 3'UTR 0.62 TCGA-EI-7004-01 1 76259844 76259844 G C RABGGTB Missense_Mutation p.E261Q 0.26 tolerated(0.12) benign(0.2) TCGA-EI-7004-01 20 16492157 16492157 A G KIF16B Silent p.Y154Y 0.36 TCGA-EI-7004-01 20 17434488 17434488 C A PCSK2 Silent p.I329I 0.29 TCGA-EI-7004-01 20 25755815 25755815 C T FAM182B Silent p.A47A 0.13 TCGA-EI-7004-01 20 43933245 43933245 C T MATN4 Missense_Mutation p.R89H 0.25 possibly_damaging(0.498) TCGA-EI-7004-01 20 60511804 60511804 G A CDH4 Missense_Mutation p.A852T 0.17 deleterious(0) probably_damaging(0.996) TCGA-EI-7004-01 20 61940830 61940830 G T COL20A1 Silent p.G362G 0.24 TCGA-EI-7004-01 22 36886153 36886153 C T FOXRED2 Missense_Mutation p.D653N 0.54 tolerated_low_confidence(0.4) benign(0.003) TCGA-EI-7004-01 22 42457030 42457030 G A NAGA Silent p.N333N 0.60 TCGA-EI-7004-01 22 44564559 44564559 C T PARVB 3'UTR 0.33 TCGA-EI-7004-01 22 50718922 50718922 G A PLXNB2 Missense_Mutation p.R1391C 0.33 deleterious(0) probably_damaging(1) TCGA-EI-7004-01 2 1312267 1312267 C A SNTG2 Missense_Mutation p.S429Y 0.29 deleterious(0.01) probably_damaging(0.982) TCGA-EI-7004-01 2 131522428 131522428 C T AMER3 3'UTR 0.38 TCGA-EI-7004-01 2 158167804 158167804 T C GALNT5 Missense_Mutation p.C923R 0.12 deleterious(0) probably_damaging(1) TCGA-EI-7004-01 2 167142966 167142966 C A SCN9A Missense_Mutation p.K494N 0.24 tolerated(0.15) benign(0.134) TCGA-EI-7004-01 2 170361424 170361424 G A BBS5 3'UTR 0.19 TCGA-EI-7004-01 2 212295749 212295749 T G ERBB4 Missense_Mutation p.N855T 0.55 tolerated(0.08) benign(0.044) TCGA-EI-7004-01 2 49191093 49191093 A G FSHR Silent p.H289H 0.09 TCGA-EI-7004-01 2 68274442 68274442 T A C1D Translation_Start_Site p.M1? 0.20 deleterious(0) possibly_damaging(0.6) TCGA-EI-7004-01 2 73678467 73678467 G A ALMS1 Missense_Mutation p.E1604K 0.14 possibly_damaging(0.57) TCGA-EI-7004-01 2 74425727 74425728 CG - MTHFD2 5'UTR 0.31 TCGA-EI-7004-01 2 95481285 95481285 C A ANKRD20A8P RNA 0.26 TCGA-EI-7004-01 3 108705783 108705783 C A MORC1 Missense_Mutation p.S734I 0.09 deleterious(0) benign(0.381) TCGA-EI-7004-01 3 113720465 113720465 C T KIAA1407 Missense_Mutation p.E714K 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-EI-7004-01 3 119462970 119462970 G A MAATS1 Missense_Mutation p.R610Q 0.25 deleterious(0.03) probably_damaging(0.962) TCGA-EI-7004-01 3 130394078 130394080 AAG - COL6A6 In_Frame_Del p.E2211del 0.23 TCGA-EI-7004-01 3 134280366 134280366 G C CEP63 Missense_Mutation p.A701P 0.19 tolerated_low_confidence(0.11) benign(0.009) TCGA-EI-7004-01 3 134967309 134967309 G A EPHB1 Missense_Mutation p.R883Q 0.19 tolerated(0.07) possibly_damaging(0.588) TCGA-EI-7004-01 3 179689417 179689417 C A PEX5L Missense_Mutation p.D20Y 0.23 deleterious_low_confidence(0) benign(0.212) TCGA-EI-7004-01 3 186792099 186792099 C T ST6GAL1 Silent p.N319N 0.15 TCGA-EI-7004-01 3 26751770 26751770 G T LRRC3B Missense_Mutation p.D203Y 0.30 deleterious(0) probably_damaging(1) TCGA-EI-7004-01 3 35778793 35778793 C T ARPP21 Missense_Mutation p.P494L 0.24 tolerated(0.28) benign(0.04) TCGA-EI-7004-01 3 38763816 38763816 C T SCN10A Missense_Mutation p.R1147H 0.22 tolerated(0.12) benign(0.022) TCGA-EI-7004-01 3 46497424 46497424 C T LTF Missense_Mutation p.G121S 0.32 tolerated(1) benign(0.001) TCGA-EI-7004-01 3 97731204 97731204 C T GABRR3 RNA 0.24 TCGA-EI-7004-01 4 140394210 140394210 T G RAB33B Missense_Mutation p.L207R 0.25 tolerated(0.08) possibly_damaging(0.601) TCGA-EI-7004-01 4 155287391 155287391 G A DCHS2 Missense_Mutation p.S222L 0.32 deleterious(0.03) possibly_damaging(0.636) TCGA-EI-7004-01 4 158238828 158238828 C A GRIA2 Missense_Mutation p.H229N 0.55 tolerated(0.95) benign(0.004) TCGA-EI-7004-01 4 170634252 170634253 - GGTAT CLCN3 Frame_Shift_Ins p.I726Mfs*26 0.47 TCGA-EI-7004-01 4 174448474 174448474 C T HAND2 Missense_Mutation p.R203Q 0.31 deleterious(0) probably_damaging(0.953) TCGA-EI-7004-01 4 183714058 183714058 C T TENM3 Missense_Mutation p.T2078M 0.47 deleterious(0) probably_damaging(0.93) TCGA-EI-7004-01 4 186299174 186299174 A G LRP2BP Intron 0.50 TCGA-EI-7004-01 4 85416932 85416932 G A NKX6-1 Nonsense_Mutation p.Q246* 0.35 TCGA-EI-7004-01 4 88732595 88732595 G A IBSP Missense_Mutation p.E163K 0.24 deleterious(0.04) benign(0.072) TCGA-EI-7004-01 5 137518042 137518042 T C KIF20A Missense_Mutation p.F136L 0.09 deleterious(0.01) probably_damaging(0.934) TCGA-EI-7004-01 5 140475880 140475880 C T PCDHB2 Silent p.L502L 0.62 TCGA-EI-7004-01 5 15928553 15928553 G A FBXL7 Missense_Mutation p.E228K 0.42 tolerated(0.74) benign(0.028) TCGA-EI-7004-01 5 159656556 159656556 C T FABP6 Missense_Mutation p.P47S 0.21 deleterious_low_confidence(0.03) benign(0.002) TCGA-EI-7004-01 5 23524462 23524462 G T PRDM9 Missense_Mutation p.D324Y 0.45 deleterious(0) benign(0.348) TCGA-EI-7004-01 6 110300625 110300625 C T GPR6 Missense_Mutation p.R104C 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-EI-7004-01 6 27783120 27783120 G A HIST1H2BM Missense_Mutation p.R100H 0.28 deleterious_low_confidence(0.05) benign(0.082) TCGA-EI-7004-01 6 30521331 30521331 C A GNL1 Missense_Mutation p.V202L 0.20 tolerated(1) benign(0) TCGA-EI-7004-01 6 31996298 31996298 C A C4B Silent p.G1073G 0.25 TCGA-EI-7004-01 6 33409488 33409488 G A SYNGAP1 Missense_Mutation p.R749Q 0.38 tolerated(0.12) probably_damaging(0.993) TCGA-EI-7004-01 6 42796604 42796604 C A GLTSCR1L Missense_Mutation p.A178E 0.24 deleterious(0.03) probably_damaging(0.928) TCGA-EI-7004-01 6 42832830 42832830 G A GLTSCR1L Silent p.S962S 0.33 TCGA-EI-7004-01 6 66115233 66115233 G T EYS Missense_Mutation p.P297H 0.38 tolerated(0.54) benign(0) TCGA-EI-7004-01 6 93956569 93956569 A T EPHA7 Silent p.I889I 0.25 TCGA-EI-7004-01 7 154860755 154860755 C T HTR5A-AS1 3'UTR 0.43 TCGA-EI-7004-01 7 42005275 42005275 G A GLI3 Silent p.P1132P 0.30 TCGA-EI-7004-01 7 43484114 43484114 A G HECW1 Missense_Mutation p.D448G 0.09 tolerated_low_confidence(0.12) benign(0) TCGA-EI-7004-01 7 94054453 94054453 G T COL1A2 Missense_Mutation p.A900S 0.19 unknown(0) TCGA-EI-7004-01 8 134031883 134031883 G A TG Silent p.T2273T 0.29 TCGA-EI-7004-01 8 41655142 41655142 C T ANK1 Intron 0.25 TCGA-EI-7004-01 8 82355627 82355627 G T PMP2 3'UTR 0.12 TCGA-EI-7004-01 9 105765464 105765464 T A CYLC2 Missense_Mutation p.F33L 0.31 deleterious(0) probably_damaging(0.991) TCGA-EI-7004-01 9 105765508 105765508 G T CYLC2 Missense_Mutation p.R48I 0.34 tolerated(0.07) probably_damaging(1) TCGA-EI-7004-01 9 116186518 116186518 T A C9orf43 Missense_Mutation p.N243K 0.26 tolerated(1) benign(0.023) TCGA-EI-7004-01 9 127572640 127572640 C T OLFML2A Silent p.Y636Y 0.36 TCGA-EI-7004-01 9 17789417 17789417 C T SH3GL2 Missense_Mutation p.R165C 0.50 deleterious(0) probably_damaging(0.984) TCGA-EI-7004-01 9 34564623 34564623 C T CNTFR Missense_Mutation p.R98H 0.47 tolerated(0.14) benign(0.002) TCGA-EI-7004-01 X 106845850 106845850 C T FRMPD3 Silent p.G1560G 0.33 TCGA-EI-7004-01 X 144910318 144910319 - A TMEM257 3'UTR 0.24 TCGA-EI-7004-01 X 5821734 5821734 G T NLGN4X Missense_Mutation p.Q329K 0.31 tolerated(0.11) benign(0.171) TCGA-F5-6464-01 10 97983657 97983657 G T BLNK Silent p.T150T 0.27 TCGA-F5-6464-01 11 113105875 113105875 C T NCAM1 Missense_Mutation p.T654M 0.17 deleterious(0.01) probably_damaging(1) TCGA-F5-6464-01 11 118981273 118981273 G T C2CD2L Silent p.V151V 0.30 TCGA-F5-6464-01 11 118981274 118981274 C T C2CD2L Silent p.L152L 0.33 TCGA-F5-6464-01 11 49974035 49974035 A C OR4C13 Missense_Mutation p.M21L 0.24 tolerated_low_confidence(0.4) benign(0.016) TCGA-F5-6464-01 11 49974351 49974351 A C OR4C13 Missense_Mutation p.K126T 0.18 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-F5-6464-01 11 61897543 61897543 C G INCENP Missense_Mutation p.H182D 0.45 deleterious(0.02) unknown(0) TCGA-F5-6464-01 11 63971564 63971564 A G STIP1 Missense_Mutation p.K533R 0.16 deleterious(0.01) probably_damaging(0.971) TCGA-F5-6464-01 11 84245625 84245625 A C DLG2 Missense_Mutation p.I169M 0.27 deleterious(0) possibly_damaging(0.483) TCGA-F5-6464-01 12 111057657 111057657 C T TCTN1 Silent p.V79V 0.29 TCGA-F5-6464-01 12 13208558 13208558 G A KIAA1467 Silent p.L37L 0.24 TCGA-F5-6464-01 12 20766576 20766576 A C PDE3A Missense_Mutation p.N404T 0.25 tolerated(0.7) benign(0.016) TCGA-F5-6464-01 12 43822123 43822123 T G ADAMTS20 Missense_Mutation p.Q1289P 0.32 tolerated(0.41) benign(0.095) TCGA-F5-6464-01 12 58207979 58207979 C T AVIL Missense_Mutation p.A33T 0.25 tolerated(0.22) benign(0.029) TCGA-F5-6464-01 12 81062877 81062877 C T PTPRQ Missense_Mutation p.A2091V 0.22 deleterious(0.01) possibly_damaging(0.46) TCGA-F5-6464-01 12 95488438 95488438 G A FGD6 Missense_Mutation p.A1177V 0.11 deleterious(0) possibly_damaging(0.818) TCGA-F5-6464-01 13 36348734 36348734 C T DCLK1 3'UTR 0.22 TCGA-F5-6464-01 14 106237583 106237583 G A IGHG3 Missense_Mutation p.P54L 0.25 deleterious(0) probably_damaging(0.979) TCGA-F5-6464-01 14 106303263 106303263 C A IGHD 3'UTR 0.23 TCGA-F5-6464-01 15 24927530 24927530 A G NPAP1 3'UTR 0.23 TCGA-F5-6464-01 15 40699900 40699900 C T IVD Missense_Mutation p.R73C 0.08 deleterious(0) possibly_damaging(0.521) TCGA-F5-6464-01 15 71124295 71124295 A G LARP6 3'UTR 0.14 TCGA-F5-6464-01 15 83826709 83826709 G A HDGFRP3 Silent p.N82N 0.31 TCGA-F5-6464-01 16 19514867 19514867 C G GDE1 Missense_Mutation p.K307N 0.29 deleterious(0) probably_damaging(0.998) TCGA-F5-6464-01 16 26147545 26147545 G A HS3ST4 Nonsense_Mutation p.W449* 0.10 TCGA-F5-6464-01 16 3454852 3454852 G C ZNF174 Intron 0.38 TCGA-F5-6464-01 16 3727735 3727735 C T TRAP1 Intron 0.60 TCGA-F5-6464-01 16 51175403 51175403 G A SALL1 Silent p.L244L 0.26 TCGA-F5-6464-01 16 58545404 58545404 G A NDRG4 Missense_Mutation p.R367H 0.29 tolerated(0.06) benign(0.063) TCGA-F5-6464-01 16 70863632 70863632 G A HYDIN Silent p.G4667G 0.23 TCGA-F5-6464-01 16 70894711 70894711 C T HYDIN Silent p.S3957S 0.14 TCGA-F5-6464-01 16 815002 815002 G A MSLN Missense_Mutation p.R159Q 0.21 deleterious(0.03) possibly_damaging(0.593) TCGA-F5-6464-01 17 18673283 18673283 G C FBXW10 Missense_Mutation p.A631P 0.30 deleterious(0.01) probably_damaging(0.966) TCGA-F5-6464-01 17 32612830 32612832 GAA - CCL11 In_Frame_Del p.K2del 0.41 TCGA-F5-6464-01 17 6704171 6704171 G A TEKT1 Missense_Mutation p.T315M 0.27 deleterious(0) probably_damaging(0.998) TCGA-F5-6464-01 17 74901330 74901330 G A MGAT5B Missense_Mutation p.R268Q 0.23 deleterious(0) possibly_damaging(0.704) TCGA-F5-6464-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-F5-6464-01 18 22805807 22805807 G A ZNF521 Missense_Mutation p.T692M 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6464-01 19 10664680 10664680 G A KRI1 Missense_Mutation p.R693C 0.19 deleterious(0) probably_damaging(0.993) TCGA-F5-6464-01 19 12155740 12155740 C T ZNF878 Missense_Mutation p.R159H 0.18 tolerated(0.09) benign(0.011) TCGA-F5-6464-01 19 12188057 12188057 T C ZNF844 3'UTR 0.13 TCGA-F5-6464-01 19 17038952 17038952 G A CPAMD8 Silent p.T1126T 0.17 TCGA-F5-6464-01 19 17119334 17119334 G A CPAMD8 Silent p.H227H 0.09 TCGA-F5-6464-01 19 23543952 23543952 G A ZNF91 Missense_Mutation p.A610V 0.27 tolerated(0.06) possibly_damaging(0.456) TCGA-F5-6464-01 19 39070725 39070725 C T RYR1 Missense_Mutation p.T4823M 0.24 unknown(0) TCGA-F5-6464-01 19 50918762 50918762 A G POLD1 Missense_Mutation p.I878V 0.20 deleterious(0.02) benign(0.381) TCGA-F5-6464-01 19 5151356 5151356 C T KDM4B Missense_Mutation p.T1042M 0.30 probably_damaging(0.93) TCGA-F5-6464-01 19 7625610 7625610 A G PNPLA6 Missense_Mutation p.D1269G 0.11 deleterious(0.01) benign(0.275) TCGA-F5-6464-01 19 9453118 9453118 G A ZNF559 Missense_Mutation p.G331R 0.30 deleterious(0.03) benign(0.391) TCGA-F5-6464-01 1 111894022 111894022 T C PIFO 3'UTR 0.30 TCGA-F5-6464-01 1 153430384 153430384 C A S100A7 Missense_Mutation p.K68N 0.10 tolerated(0.14) benign(0.059) TCGA-F5-6464-01 1 167097442 167097442 C T DUSP27 Missense_Mutation p.T1025M 0.25 tolerated(0.26) benign(0.005) TCGA-F5-6464-01 1 22151218 22151218 G A HSPG2 Missense_Mutation p.P4215L 0.20 probably_damaging(0.979) TCGA-F5-6464-01 1 247751751 247751751 A G OR2G2 Silent p.L30L 0.16 TCGA-F5-6464-01 1 38095339 38095339 C T RSPO1 5'UTR 0.19 TCGA-F5-6464-01 1 44401258 44401258 C A ARTN Intron 0.18 TCGA-F5-6464-01 1 67558929 67558929 A G C1orf141 Missense_Mutation p.F321S 0.20 tolerated(0.13) possibly_damaging(0.82) TCGA-F5-6464-01 1 75602815 75602815 T C LHX8 Missense_Mutation p.S46P 0.29 tolerated(0.18) benign(0.253) TCGA-F5-6464-01 1 762753 762753 G A LINC00115 RNA 0.18 TCGA-F5-6464-01 1 82452639 82452639 A G LPHN2 Intron 0.17 TCGA-F5-6464-01 20 1276982 1276982 G A SNPH 5'UTR 0.47 TCGA-F5-6464-01 20 13251271 13251271 C T ISM1 Nonsense_Mutation p.R87* 0.45 TCGA-F5-6464-01 20 32868877 32868877 C T AHCY Missense_Mutation p.C421Y 0.18 deleterious_low_confidence(0.02) benign(0.007) TCGA-F5-6464-01 20 43567344 43567344 A T PABPC1L Silent p.A602A 0.48 TCGA-F5-6464-01 21 15352054 15352054 C T ANKRD20A11P RNA 0.20 TCGA-F5-6464-01 21 18938003 18938003 T C CXADR Missense_Mutation p.I364T 0.22 deleterious(0) possibly_damaging(0.907) TCGA-F5-6464-01 21 48083335 48083335 C T PRMT2 Missense_Mutation p.P380S 0.25 deleterious(0.02) probably_damaging(1) TCGA-F5-6464-01 2 12863619 12863619 C T TRIB2 Silent p.D168D 0.36 TCGA-F5-6464-01 2 163256866 163256866 C A KCNH7 Missense_Mutation p.R747L 0.35 deleterious(0.01) benign(0.217) TCGA-F5-6464-01 2 179584867 179584867 T G TTN Missense_Mutation p.E7834D 0.21 TCGA-F5-6464-01 2 179590609 179590609 A C TTN Missense_Mutation p.F6814V 0.14 TCGA-F5-6464-01 2 207620125 207620125 G A MDH1B Missense_Mutation p.A173V 0.32 tolerated(0.51) benign(0.002) TCGA-F5-6464-01 2 210560896 210560896 A C MAP2 Missense_Mutation p.E1334D 0.14 tolerated_low_confidence(0.06) benign(0.084) TCGA-F5-6464-01 2 215843133 215843133 A C ABCA12 Missense_Mutation p.L1679V 0.16 tolerated(0.21) benign(0.146) TCGA-F5-6464-01 2 218925681 218925681 G A CXCR2P1 RNA 0.16 TCGA-F5-6464-01 2 234399874 234399874 A C USP40 Missense_Mutation p.L995R 0.35 deleterious(0) probably_damaging(0.953) TCGA-F5-6464-01 2 56611548 56611548 A C CCDC85A 3'UTR 0.14 TCGA-F5-6464-01 2 68415795 68415795 C T PPP3R1 Missense_Mutation p.G24E 0.43 tolerated(0.27) benign(0.356) TCGA-F5-6464-01 2 77746015 77746015 T G LRRTM4 Missense_Mutation p.K327T 0.14 tolerated(0.23) possibly_damaging(0.731) TCGA-F5-6464-01 2 85895300 85895300 C T SFTPB Missense_Mutation p.E15K 0.15 tolerated_low_confidence(1) benign(0) TCGA-F5-6464-01 3 189526170 189526170 C T TP63 Missense_Mutation p.A145V 0.17 deleterious(0.01) probably_damaging(0.99) TCGA-F5-6464-01 3 195701390 195701390 G A SDHAP1 RNA 0.10 TCGA-F5-6464-01 3 21478644 21478644 C T ZNF385D Missense_Mutation p.R164H 0.04 tolerated(0.13) benign(0.001) TCGA-F5-6464-01 3 41497079 41497079 T G ULK4 Missense_Mutation p.K1134T 0.35 tolerated(0.07) possibly_damaging(0.459) TCGA-F5-6464-01 4 125592462 125592462 T A ANKRD50 Missense_Mutation p.E657V 0.24 deleterious(0) probably_damaging(0.977) TCGA-F5-6464-01 4 167675850 167675850 T G SPOCK3 Missense_Mutation p.K250T 0.17 deleterious(0) possibly_damaging(0.809) TCGA-F5-6464-01 4 66217173 66217173 G T EPHA5 Nonsense_Mutation p.C814* 0.25 TCGA-F5-6464-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.28 TCGA-F5-6464-01 5 130517926 130517926 C A LYRM7 Silent p.A32A 0.06 TCGA-F5-6464-01 5 140250830 140250830 G T PCDHA11 Silent p.L714L 0.42 TCGA-F5-6464-01 5 14687711 14687711 C A FAM105B Missense_Mutation p.L184M 0.19 tolerated(0.06) probably_damaging(0.953) TCGA-F5-6464-01 5 5232508 5232508 T C ADAMTS16 Missense_Mutation p.Y577H 0.24 tolerated(0.07) benign(0.031) TCGA-F5-6464-01 6 102124561 102124561 G T GRIK2 Missense_Mutation p.R202L 0.21 deleterious(0) probably_damaging(1) TCGA-F5-6464-01 6 125574874 125574874 G A TPD52L1 Missense_Mutation p.R133H 0.18 deleterious(0) probably_damaging(0.993) TCGA-F5-6464-01 6 146875896 146875896 G A RAB32 3'UTR 0.22 TCGA-F5-6464-01 6 152577846 152577846 C T SYNE1 Missense_Mutation p.V6343M 0.26 benign(0.003) TCGA-F5-6464-01 6 76023146 76023146 G A FILIP1 Missense_Mutation p.T801M 0.25 tolerated(0.15) possibly_damaging(0.849) TCGA-F5-6464-01 6 88854560 88854560 C T CNR1 Missense_Mutation p.R145H 0.35 tolerated(0.5) benign(0.185) TCGA-F5-6464-01 6 99286263 99286263 A C POU3F2 3'UTR 0.15 TCGA-F5-6464-01 7 139107132 139107132 C T LUC7L2 3'UTR 0.16 TCGA-F5-6464-01 7 154876006 154876006 G A HTR5A Missense_Mutation p.V295M 0.20 deleterious(0.02) probably_damaging(0.967) TCGA-F5-6464-01 7 32961025 32961025 A T RP9P RNA 0.60 TCGA-F5-6464-01 7 44747240 44747240 G T OGDH Missense_Mutation p.E952D 0.32 tolerated(0.55) benign(0.001) TCGA-F5-6464-01 7 47694858 47694858 G A C7orf65 5'UTR 0.32 TCGA-F5-6464-01 8 105361283 105361283 A C DCSTAMP Missense_Mutation p.N168T 0.10 tolerated(0.24) benign(0.045) TCGA-F5-6464-01 8 106814187 106814187 T A ZFPM2 Missense_Mutation p.I626N 0.18 tolerated(0.38) benign(0.328) TCGA-F5-6464-01 8 143614743 143614743 C T BAI1 Silent p.S1162S 0.37 TCGA-F5-6464-01 8 66691991 66691991 C T PDE7A Missense_Mutation p.G83S 0.35 tolerated(0.08) benign(0.029) TCGA-F5-6464-01 8 70964289 70964289 G A PRDM14 3'UTR 0.32 TCGA-F5-6464-01 8 86572765 86572765 A C REXO1L1P 3'UTR 0.25 TCGA-F5-6464-01 8 89198818 89198818 C A MMP16 Missense_Mutation p.K97N 0.10 deleterious(0.02) benign(0.015) TCGA-F5-6464-01 9 116779063 116779063 C A ZNF618 Silent p.I269I 0.28 TCGA-F5-6464-01 9 123789484 123789484 T G C5 Missense_Mutation p.K276T 0.07 tolerated(0.2) benign(0.007) TCGA-F5-6464-01 9 35310725 35310725 C G UNC13B Missense_Mutation p.H341Q 0.26 tolerated_low_confidence(0.39) benign(0) TCGA-F5-6464-01 9 91617301 91617301 C T S1PR3 3'UTR 0.15 TCGA-F5-6464-01 X 100177923 100177923 C G XKRX Missense_Mutation p.G155R 0.20 deleterious(0) probably_damaging(0.955) TCGA-F5-6464-01 X 100532686 100532686 T C TAF7L Missense_Mutation p.D286G 0.16 tolerated(0.32) benign(0.015) TCGA-F5-6464-01 X 10058885 10058885 G A WWC3 Missense_Mutation p.R151Q 0.19 deleterious(0.01) possibly_damaging(0.892) TCGA-F5-6464-01 X 117043321 117043321 T G KLHL13 Missense_Mutation p.S440R 0.25 deleterious(0) probably_damaging(0.994) TCGA-F5-6464-01 X 117106802 117106802 C T KLHL13 Intron 0.22 TCGA-F5-6464-01 X 135313098 135313098 T G MAP7D3 Missense_Mutation p.I481L 0.23 tolerated(0.1) benign(0.001) TCGA-F5-6464-01 X 139866322 139866322 C T CDR1 Silent p.S70S 0.41 TCGA-F5-6464-01 X 144911128 144911128 T A TMEM257 3'UTR 0.21 TCGA-F5-6464-01 X 147014971 147014971 A G FMR1 Intron 0.23 TCGA-F5-6464-01 X 38211986 38211986 G C OTC Missense_Mutation p.A13P 0.22 tolerated(0.19) benign(0.001) TCGA-F5-6464-01 X 54259351 54259351 A C WNK3 Silent p.T1577T 0.16 TCGA-F5-6464-01 X 56591723 56591724 - T UBQLN2 Frame_Shift_Ins p.P474Sfs*71 0.33 TCGA-F5-6464-01 X 63564991 63564991 G A MTMR8 Missense_Mutation p.R267C 0.16 deleterious(0.01) possibly_damaging(0.823) TCGA-F5-6464-01 X 92928039 92928039 G A NAP1L3 Missense_Mutation p.R89W 0.45 tolerated(0.08) probably_damaging(0.927) TCGA-F5-6465-01 10 118891808 118891808 T G VAX1 3'Flank 0.26 TCGA-F5-6465-01 10 48389141 48389141 C T RBP3 Silent p.V579V 0.24 TCGA-F5-6465-01 10 49968426 49968426 G A WDFY4 Missense_Mutation p.G832R 0.29 deleterious(0.01) benign(0.341) TCGA-F5-6465-01 10 50004492 50004492 C T WDFY4 Silent p.F1469F 0.35 TCGA-F5-6465-01 10 89311877 89311877 G C MINPP1 Missense_Mutation p.G369A 0.30 deleterious(0) probably_damaging(0.999) TCGA-F5-6465-01 10 90582737 90582737 T C ANKRD22 Silent p.K179K 0.30 TCGA-F5-6465-01 11 107966385 107966385 A G CUL5 Silent p.E624E 0.23 TCGA-F5-6465-01 11 17429962 17429962 G A ABCC8 Nonsense_Mutation p.R933* 0.38 TCGA-F5-6465-01 11 30516995 30516995 T G MPPED2 Silent p.A128A 0.29 TCGA-F5-6465-01 11 5474884 5474884 C A OR51I2 Missense_Mutation p.H56N 0.22 deleterious(0) probably_damaging(0.991) TCGA-F5-6465-01 11 58190126 58190126 A G OR5B2 Silent p.F203F 0.37 TCGA-F5-6465-01 11 60102486 60102486 C T MS4A6E Missense_Mutation p.R40C 0.24 tolerated(0.19) benign(0.001) TCGA-F5-6465-01 11 71725052 71725052 G A NUMA1 Missense_Mutation p.T1166I 0.24 possibly_damaging(0.543) TCGA-F5-6465-01 11 71725053 71725053 T G NUMA1 Missense_Mutation p.T1166P 0.24 possibly_damaging(0.697) TCGA-F5-6465-01 12 102160008 102160008 C T GNPTAB Silent p.Q491Q 0.08 TCGA-F5-6465-01 12 111701582 111701582 G C CUX2 Missense_Mutation p.K80N 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6465-01 12 33532789 33532789 G A SYT10 Missense_Mutation p.T493M 0.24 deleterious(0.01) possibly_damaging(0.475) TCGA-F5-6465-01 12 49663698 49663698 G A TUBA1C Missense_Mutation p.R105Q 0.26 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-F5-6465-01 12 72335393 72335393 C T TPH2 Silent p.D45D 0.25 TCGA-F5-6465-01 12 76425433 76425433 A T PHLDA1 Missense_Mutation p.V30D 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F5-6465-01 12 89861393 89861393 C G POC1B Splice_Site p.X293_splice 0.11 TCGA-F5-6465-01 13 19751234 19751234 C T TUBA3C Missense_Mutation p.E297K 0.25 deleterious_low_confidence(0) benign(0.296) TCGA-F5-6465-01 13 24465840 24465840 A G C1QTNF9B Missense_Mutation p.L197P 0.17 tolerated(0.68) benign(0) TCGA-F5-6465-01 13 36744745 36744745 G A SOHLH2 Missense_Mutation p.P471S 0.08 tolerated(0.08) benign(0.022) TCGA-F5-6465-01 13 36909193 36909193 C T SPG20 Missense_Mutation p.D259N 0.42 tolerated(0.14) benign(0.29) TCGA-F5-6465-01 13 37599457 37599457 A T SUPT20H Missense_Mutation p.D443E 0.18 tolerated(1) benign(0) TCGA-F5-6465-01 13 39438545 39438545 C A FREM2 Missense_Mutation p.F2595L 0.20 deleterious(0.02) probably_damaging(0.985) TCGA-F5-6465-01 13 41767120 41767120 C T KBTBD7 Missense_Mutation p.R425H 0.24 deleterious(0.04) benign(0.344) TCGA-F5-6465-01 13 58299162 58299162 T C PCDH17 Silent p.L1072L 0.19 TCGA-F5-6465-01 14 51378483 51378483 A - PYGL Frame_Shift_Del p.F645Sfs*36 0.18 TCGA-F5-6465-01 14 61179933 61179933 A T SIX4 3'UTR 0.25 TCGA-F5-6465-01 14 74179954 74179954 G A PNMA1 Missense_Mutation p.P130L 0.40 tolerated(0.43) benign(0.003) TCGA-F5-6465-01 14 93681298 93681298 C T UBR7 Silent p.C155C 0.25 TCGA-F5-6465-01 15 29415859 29415859 C G FAM189A1 Splice_Site p.X435_splice 0.39 TCGA-F5-6465-01 15 39545482 39545482 T C C15orf54 3'UTR 0.24 TCGA-F5-6465-01 16 2160913 2160913 C T PKD1 Missense_Mutation p.E1419K 0.14 benign(0.014) TCGA-F5-6465-01 16 2257259 2257259 C T MLST8 Silent p.N162N 0.21 TCGA-F5-6465-01 16 30198198 30198198 A G CORO1A Missense_Mutation p.E128G 0.10 tolerated(0.23) benign(0.219) TCGA-F5-6465-01 16 425221 425221 A G TMEM8A Missense_Mutation p.W451R 0.31 deleterious(0) benign(0.004) TCGA-F5-6465-01 16 66995285 66995285 A G CES3 Silent p.T25T 0.15 TCGA-F5-6465-01 17 36719669 36719669 G C SRCIN1 Missense_Mutation p.I210M 0.30 deleterious(0) probably_damaging(1) TCGA-F5-6465-01 17 42397597 42397597 G A SLC25A39 Missense_Mutation p.R311W 0.36 tolerated(0.16) benign(0.006) TCGA-F5-6465-01 17 57746254 57746254 A G CLTC Missense_Mutation p.R749G 0.26 deleterious(0) possibly_damaging(0.798) TCGA-F5-6465-01 17 58365981 58365981 A C USP32 Silent p.T158T 0.66 TCGA-F5-6465-01 17 67087376 67087376 A C ABCA6 Missense_Mutation p.L1146V 0.36 tolerated(0.65) benign(0.004) TCGA-F5-6465-01 17 70119039 70119039 T AAGA SOX9 Nonsense_Mutation p.F204delins* 0.63 TCGA-F5-6465-01 17 72350578 72350578 G T KIF19 Silent p.G862G 0.36 TCGA-F5-6465-01 17 7578492 7578492 C T TP53 Nonsense_Mutation p.W146* 0.16 TCGA-F5-6465-01 17 78321010 78321010 C G RNF213 Missense_Mutation p.L2959V 0.69 probably_damaging(0.997) TCGA-F5-6465-01 18 21735711 21735711 T C CABYR Silent p.C82C 0.09 TCGA-F5-6465-01 19 10659630 10659630 G A ATG4D Missense_Mutation p.E296K 0.35 tolerated(0.3) benign(0.028) TCGA-F5-6465-01 19 21587986 21587986 G A ZNF493 Missense_Mutation p.C29Y 0.30 deleterious(0.04) probably_damaging(0.991) TCGA-F5-6465-01 19 22155800 22155800 A G ZNF208 Missense_Mutation p.I679T 0.08 tolerated(0.46) benign(0.003) TCGA-F5-6465-01 19 51769113 51769113 C - SIGLECL1 Frame_Shift_Del p.F130Sfs*8 0.21 TCGA-F5-6465-01 19 5455583 5455583 G A ZNRF4 Silent p.A27A 0.21 TCGA-F5-6465-01 19 8174153 8174153 C A FBN3 Missense_Mutation p.A1526S 0.25 deleterious(0) probably_damaging(0.998) TCGA-F5-6465-01 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.33 deleterious(0) possibly_damaging(0.726) TCGA-F5-6465-01 1 120438740 120438740 C T ADAM30 Missense_Mutation p.V74I 0.24 tolerated(0.13) benign(0.322) TCGA-F5-6465-01 1 159783322 159783322 G T FCRL6 Missense_Mutation p.E351D 0.36 deleterious(0.03) possibly_damaging(0.715) TCGA-F5-6465-01 1 181727109 181727109 C T CACNA1E Silent p.S1452S 0.31 TCGA-F5-6465-01 1 197397061 197397061 C A CRB1 Missense_Mutation p.T869K 0.23 tolerated(0.19) benign(0.004) TCGA-F5-6465-01 1 247267594 247267594 C T ZNF669 5'UTR 0.10 TCGA-F5-6465-01 1 248844879 248844879 G T OR14I1 Missense_Mutation p.L243I 0.26 deleterious(0.03) probably_damaging(0.923) TCGA-F5-6465-01 1 55277491 55277491 T A C1orf177 Missense_Mutation p.Y169N 0.29 deleterious(0) probably_damaging(1) TCGA-F5-6465-01 1 6648899 6648899 C T ZBTB48 Nonsense_Mutation p.R589* 0.23 TCGA-F5-6465-01 1 78207427 78207427 G A USP33 Missense_Mutation p.P17S 0.29 deleterious_low_confidence(0) possibly_damaging(0.641) TCGA-F5-6465-01 20 14307499 14307499 G C FLRT3 Missense_Mutation p.D218E 0.16 tolerated(0.44) benign(0.118) TCGA-F5-6465-01 20 20501609 20501609 G T RALGAPA2 Missense_Mutation p.Q1346K 0.12 tolerated(0.74) benign(0.01) TCGA-F5-6465-01 20 25666698 25666698 T C ZNF337 Missense_Mutation p.S30G 0.10 tolerated(0.24) benign(0.009) TCGA-F5-6465-01 20 47782823 47782823 C G STAU1 Splice_Site 0.09 TCGA-F5-6465-01 20 58467262 58467262 C G SYCP2 Missense_Mutation p.W716S 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6465-01 22 20800900 20800900 C T KLHL22 Missense_Mutation p.E457K 0.20 tolerated(0.59) benign(0.197) TCGA-F5-6465-01 22 24985195 24985195 G A FAM211B Intron 0.34 TCGA-F5-6465-01 2 100210211 100210211 G A AFF3 Missense_Mutation p.R663C 0.23 deleterious(0) probably_damaging(0.993) TCGA-F5-6465-01 2 173349833 173349856 CATGCTTTTCATGCAGGATAATAT - ITGA6 Splice_Site p.X571_splice 0.36 TCGA-F5-6465-01 2 178562149 178562149 G C PDE11A Missense_Mutation p.I752M 0.21 deleterious(0.01) possibly_damaging(0.601) TCGA-F5-6465-01 2 179579734 179579734 C T TTN Missense_Mutation p.V8727I 0.20 TCGA-F5-6465-01 2 242814002 242814002 G A CXXC11 Missense_Mutation p.A99T 0.42 tolerated(0.74) benign(0.024) TCGA-F5-6465-01 2 27730108 27730108 G T GCKR Missense_Mutation p.R358L 0.36 tolerated(0.12) benign(0.052) TCGA-F5-6465-01 2 46844367 46844367 T G CRIPT 5'UTR 0.16 TCGA-F5-6465-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.38 deleterious(0.01) probably_damaging(0.964) TCGA-F5-6465-01 2 74684548 74684548 G T INO80B Nonsense_Mutation p.E210* 0.27 TCGA-F5-6465-01 2 99013312 99013312 C T CNGA3 Missense_Mutation p.S560L 0.44 deleterious(0.01) benign(0.065) TCGA-F5-6465-01 3 130289968 130289968 G A COL6A6 Missense_Mutation p.R903Q 0.33 tolerated(0.09) benign(0.009) TCGA-F5-6465-01 3 133674025 133674025 C T SLCO2A1 Missense_Mutation p.R137H 0.23 tolerated(0.47) benign(0.005) TCGA-F5-6465-01 3 137816602 137816602 C G DZIP1L Intron 0.33 TCGA-F5-6465-01 3 193332592 193332592 G A OPA1 Missense_Mutation p.R38Q 0.26 deleterious_low_confidence(0.01) benign(0.336) TCGA-F5-6465-01 3 196730982 196730982 G A MFI2 Intron 0.22 TCGA-F5-6465-01 3 44777830 44777830 C T ZNF501 3'UTR 0.28 TCGA-F5-6465-01 4 13605821 13605821 C G BOD1L1 Missense_Mutation p.K901N 0.18 probably_damaging(0.999) TCGA-F5-6465-01 4 156269037 156269037 T G MAP9 Missense_Mutation p.E614D 0.31 tolerated(0.18) probably_damaging(0.998) TCGA-F5-6465-01 4 25160601 25160601 G A SEPSECS Silent p.S81S 0.18 TCGA-F5-6465-01 4 38830422 38830422 G T TLR6 Missense_Mutation p.L225M 0.28 tolerated(0.4) benign(0.373) TCGA-F5-6465-01 4 46060510 46060510 G A GABRG1 Missense_Mutation p.T252M 0.21 deleterious(0) probably_damaging(0.934) TCGA-F5-6465-01 4 6598966 6598966 G A MAN2B2 Missense_Mutation p.R395H 0.52 tolerated(1) benign(0.002) TCGA-F5-6465-01 4 83350563 83350563 G C HNRNPDL Missense_Mutation p.S94C 0.27 deleterious_low_confidence(0) possibly_damaging(0.7) TCGA-F5-6465-01 5 112174784 112174784 A T APC Nonsense_Mutation p.K1165* 0.25 TCGA-F5-6465-01 5 112175207 112175207 G T APC Nonsense_Mutation p.E1306* 0.23 TCGA-F5-6465-01 5 11565132 11565132 C T CTNND2 Missense_Mutation p.A71T 0.29 tolerated(0.13) possibly_damaging(0.776) TCGA-F5-6465-01 5 140221294 140221294 C G PCDHA8 Missense_Mutation p.P130A 0.20 tolerated_low_confidence(0.24) benign(0.002) TCGA-F5-6465-01 5 140712120 140712120 G A PCDHGA1 Silent p.T623T 0.15 TCGA-F5-6465-01 5 158595954 158595954 C T RNF145 Missense_Mutation p.V380I 0.21 tolerated(0.13) possibly_damaging(0.564) TCGA-F5-6465-01 5 167887746 167887746 G A WWC1 Missense_Mutation p.R972Q 0.21 tolerated(0.26) probably_damaging(0.973) TCGA-F5-6465-01 5 55111252 55111252 G T DDX4 Splice_Site p.X699_splice 0.21 TCGA-F5-6465-01 6 138745404 138745404 G A NHSL1 Silent p.G1549G 0.25 TCGA-F5-6465-01 6 160514823 160514823 A G IGF2R Intron 0.10 TCGA-F5-6465-01 6 168352576 168352576 G A MLLT4 Silent p.S1507S 0.27 TCGA-F5-6465-01 6 26216614 26216614 C G HIST1H2BG Missense_Mutation p.K86N 0.18 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-F5-6465-01 6 26285731 26285731 T C HIST1H4H 5'UTR 0.14 TCGA-F5-6465-01 6 29430198 29430198 G C OR2H1 Missense_Mutation p.A218P 0.22 tolerated(0.2) probably_damaging(0.968) TCGA-F5-6465-01 6 43180950 43180950 G A CUL9 Missense_Mutation p.R1759Q 0.14 deleterious(0.04) benign(0.012) TCGA-F5-6465-01 6 46721485 46721485 A G ANKRD66 Missense_Mutation p.I119V 0.23 tolerated(0.29) benign(0.01) TCGA-F5-6465-01 6 56504783 56504783 C T DST Missense_Mutation p.V318I 0.37 benign(0.127) TCGA-F5-6465-01 6 79680546 79680546 T A PHIP Silent p.I983I 0.27 TCGA-F5-6465-01 7 150325095 150325095 G A GIMAP6 Silent p.C197C 0.23 TCGA-F5-6465-01 7 42006129 42006129 C T GLI3 Missense_Mutation p.D848N 0.30 tolerated(0.05) probably_damaging(0.999) TCGA-F5-6465-01 7 82997234 82997234 G A SEMA3E Missense_Mutation p.R666C 0.35 tolerated(0.08) possibly_damaging(0.855) TCGA-F5-6465-01 7 83592543 83592543 C T SEMA3A Missense_Mutation p.R613Q 0.27 tolerated(0.44) benign(0) TCGA-F5-6465-01 7 94298778 94298778 A T PEG10 3'UTR 0.16 TCGA-F5-6465-01 8 116616327 116616327 C T TRPS1 Silent p.S623S 0.52 TCGA-F5-6465-01 8 16007743 16007743 G A MSR1 Missense_Mutation p.P326S 0.10 tolerated(0.21) benign(0.034) TCGA-F5-6465-01 8 2037889 2037889 C T MYOM2 Missense_Mutation p.P568L 0.40 deleterious(0) probably_damaging(1) TCGA-F5-6465-01 8 37985835 37985835 C T ASH2L Missense_Mutation p.R398W 0.19 deleterious(0) possibly_damaging(0.847) TCGA-F5-6465-01 9 105767783 105767783 A T CYLC2 Missense_Mutation p.K290N 0.29 tolerated(0.09) unknown(0) TCGA-F5-6465-01 9 107367287 107367287 A C OR13C2 Missense_Mutation p.L208V 0.33 tolerated(0.66) possibly_damaging(0.559) TCGA-F5-6465-01 9 5743014 5743014 G A KIAA1432 Splice_Site p.X349_splice 0.23 TCGA-F5-6465-01 X 101138644 101138644 T A ZMAT1 Missense_Mutation p.R585S 0.25 tolerated(0.23) benign(0.014) TCGA-F5-6465-01 X 102005251 102005251 C G BHLHB9 Missense_Mutation p.A443G 0.05 deleterious(0.02) probably_damaging(0.962) TCGA-F5-6465-01 X 103349157 103349157 G A SLC25A53 Missense_Mutation p.R262W 0.44 deleterious(0.05) benign(0.016) TCGA-F5-6465-01 X 107898654 107898654 G A COL4A5 Missense_Mutation p.A1114T 0.30 unknown(0) TCGA-F5-6465-01 X 11783633 11783633 C T MSL3 Missense_Mutation p.T319M 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-F5-6465-01 X 125953813 125953813 G T CXorf64 5'UTR 0.40 TCGA-F5-6465-01 X 154467052 154467052 G C VBP1 Splice_Site p.X175_splice 0.10 TCGA-F5-6465-01 X 19373556 19373556 G A PDHA1 Silent p.T269T 0.25 TCGA-F5-6465-01 X 92964379 92964379 C T FAM133A 5'UTR 0.48 TCGA-F5-6571-01 10 105203740 105203740 C T PDCD11 Silent p.Y1731Y 0.39 TCGA-F5-6571-01 10 16556514 16556514 A C C1QL3 3'UTR 0.09 TCGA-F5-6571-01 10 3202103 3202103 G A PITRM1 Missense_Mutation p.P315L 0.46 tolerated(0.14) benign(0.219) TCGA-F5-6571-01 10 37431116 37431116 G A ANKRD30A Missense_Mutation p.V375M 0.47 tolerated(0.05) benign(0.111) TCGA-F5-6571-01 10 43279900 43279900 A G BMS1 Missense_Mutation p.K20E 0.09 deleterious(0) probably_damaging(0.993) TCGA-F5-6571-01 10 49207801 49207801 G A FAM25C 5'UTR 0.27 TCGA-F5-6571-01 10 61029686 61029686 G A FAM13C Missense_Mutation p.S259F 0.08 deleterious(0.02) probably_damaging(1) TCGA-F5-6571-01 10 74103215 74103215 C T DNAJB12 Silent p.S156S 0.39 TCGA-F5-6571-01 11 110124794 110124794 C T RDX Missense_Mutation p.R279Q 0.29 tolerated(0.06) possibly_damaging(0.488) TCGA-F5-6571-01 11 118765873 118765873 T C BCL9L 3'UTR 0.12 TCGA-F5-6571-01 11 119213328 119213328 G A MFRP Silent p.S455S 0.40 TCGA-F5-6571-01 11 123814393 123814393 T C OR6T1 Missense_Mutation p.I51M 0.09 tolerated(0.56) benign(0.01) TCGA-F5-6571-01 11 20623125 20623125 G A SLC6A5 Missense_Mutation p.V152M 0.47 tolerated_low_confidence(0.11) benign(0.046) TCGA-F5-6571-01 11 25004826 25004826 C T LUZP2 Missense_Mutation p.A251V 0.28 tolerated(0.33) benign(0.001) TCGA-F5-6571-01 11 45924235 45924235 G A MAPK8IP1 Missense_Mutation p.R306Q 0.38 tolerated(0.08) possibly_damaging(0.895) TCGA-F5-6571-01 11 61645038 61645038 A G FADS3 Missense_Mutation p.L277P 0.11 tolerated(1) probably_damaging(1) TCGA-F5-6571-01 11 82936044 82936044 T A ANKRD42 Nonsense_Mutation p.L217* 0.36 TCGA-F5-6571-01 11 94279469 94279469 C T FUT4 3'UTR 0.35 TCGA-F5-6571-01 12 109604708 109604708 A G ACACB Silent p.E232E 0.10 TCGA-F5-6571-01 12 11138708 11138708 C T TAS2R50 Missense_Mutation p.S251N 0.09 tolerated(0.73) benign(0.004) TCGA-F5-6571-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.34 deleterious(0.04) possibly_damaging(0.506) TCGA-F5-6571-01 12 27081186 27081187 AC - ASUN Frame_Shift_Del p.V179Pfs*6 0.10 TCGA-F5-6571-01 12 30882099 30882099 G T CAPRIN2 Missense_Mutation p.S422Y 0.09 deleterious(0.03) possibly_damaging(0.632) TCGA-F5-6571-01 12 95415973 95415973 C T NR2C1 3'UTR 0.22 TCGA-F5-6571-01 13 27259961 27259961 C T WASF3 Silent p.D496D 0.81 TCGA-F5-6571-01 13 58208514 58208514 G A PCDH17 Missense_Mutation p.A612T 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6571-01 13 78474696 78474696 G C EDNRB Missense_Mutation p.L439V 0.11 tolerated(0.49) benign(0.036) TCGA-F5-6571-01 15 75499747 75499747 G A C15orf39 Missense_Mutation p.R453Q 0.67 tolerated(0.72) benign(0) TCGA-F5-6571-01 16 14029410 14029410 G A ERCC4 Missense_Mutation p.D541N 0.40 tolerated(0.08) benign(0.078) TCGA-F5-6571-01 16 20976234 20976234 C T DNAH3 Missense_Mutation p.R2991H 0.23 tolerated(0.1) benign(0.035) TCGA-F5-6571-01 16 24135244 24135244 G A PRKCB Missense_Mutation p.R336Q 0.40 tolerated(0.14) benign(0.002) TCGA-F5-6571-01 16 25704190 25704190 C T HS3ST4 Missense_Mutation p.T151M 0.30 deleterious_low_confidence(0) possibly_damaging(0.481) TCGA-F5-6571-01 16 30035138 30035138 C G C16orf92 Nonsense_Mutation p.S74* 0.33 TCGA-F5-6571-01 16 31368722 31368722 C T ITGAX Intron 0.33 TCGA-F5-6571-01 16 81145838 81145838 C T PKD1L2 RNA 0.35 TCGA-F5-6571-01 17 33849469 33849469 A G SLFN12L 5'UTR 0.23 TCGA-F5-6571-01 17 37650863 37650863 C T CDK12 Missense_Mutation p.R779C 0.46 probably_damaging(0.999) TCGA-F5-6571-01 17 38126771 38126771 G T GSDMA Missense_Mutation p.M143I 0.07 tolerated(0.11) benign(0.015) TCGA-F5-6571-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.56 TCGA-F5-6571-01 17 78014023 78014023 C T CCDC40 Missense_Mutation p.S169L 0.29 tolerated(0.27) benign(0.001) TCGA-F5-6571-01 17 79514034 79514034 C A C17orf70 Nonsense_Mutation p.G692* 0.38 TCGA-F5-6571-01 19 10250808 10250808 C G DNMT1 Silent p.P1240P 0.27 TCGA-F5-6571-01 19 10406046 10406046 C T ICAM5 Missense_Mutation p.A752V 0.45 tolerated(0.15) possibly_damaging(0.529) TCGA-F5-6571-01 19 16687285 16687285 C T MED26 Silent p.E452E 0.47 TCGA-F5-6571-01 19 18652666 18652677 CTTCCTCCTCAC - FKBP8 In_Frame_Del p.G35_E38del 0.52 TCGA-F5-6571-01 19 55603861 55603861 G A PPP1R12C Silent p.L668L 0.16 TCGA-F5-6571-01 19 691933 691933 C T PRSS57 Silent p.V102V 0.28 TCGA-F5-6571-01 19 9049229 9049229 G A MUC16 Missense_Mutation p.A10801V 0.41 benign(0.021) TCGA-F5-6571-01 1 104161623 104161623 C A AMY2A Missense_Mutation p.P136T 0.27 tolerated(0.25) benign(0.005) TCGA-F5-6571-01 1 158656385 158656385 G T SPTA1 5'UTR 0.46 TCGA-F5-6571-01 1 212799671 212799671 C T FAM71A Silent p.S484S 0.36 TCGA-F5-6571-01 1 228112049 228112049 G A WNT9A Silent p.H135H 0.44 TCGA-F5-6571-01 1 36926296 36926296 G A MRPS15 Nonsense_Mutation p.R128* 0.09 TCGA-F5-6571-01 1 47582359 47582359 A - CYP4Z1 Frame_Shift_Del p.I437Yfs*13 0.28 TCGA-F5-6571-01 1 60228197 60228197 G A FGGY Missense_Mutation p.V557I 0.28 tolerated(0.28) possibly_damaging(0.73) TCGA-F5-6571-01 20 31019464 31019464 C T ASXL1 Missense_Mutation p.R321W 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6571-01 20 34025243 34025243 G A GDF5 Nonsense_Mutation p.R156* 0.44 TCGA-F5-6571-01 20 48098748 48098748 G A KCNB1 Silent p.G90G 0.71 TCGA-F5-6571-01 20 48604411 48604411 G A SNAI1 Missense_Mutation p.E205K 0.69 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6571-01 20 853640 853640 C T ANGPT4 Missense_Mutation p.R492H 0.44 tolerated(0.05) possibly_damaging(0.666) TCGA-F5-6571-01 22 20458217 20458217 G A RIMBP3 Nonsense_Mutation p.R1029* 0.11 TCGA-F5-6571-01 22 22931101 22931101 T C IGLV2-33 Missense_Mutation p.L99P 0.10 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-F5-6571-01 22 24808616 24808616 A G SPECC1L Missense_Mutation p.R1069G 0.08 tolerated(0.12) benign(0.201) TCGA-F5-6571-01 22 26894921 26894921 C T TFIP11 Silent p.E450E 0.28 TCGA-F5-6571-01 22 43950910 43950910 C T EFCAB6 Missense_Mutation p.D1163N 0.13 tolerated(1) benign(0) TCGA-F5-6571-01 2 116538455 116538455 C G DPP10 Missense_Mutation p.S460C 0.05 deleterious(0.01) probably_damaging(0.951) TCGA-F5-6571-01 2 185803696 185803696 C A ZNF804A Silent p.L1191L 0.14 TCGA-F5-6571-01 2 207603037 207603037 C T MDH1B 3'UTR 0.21 TCGA-F5-6571-01 2 42990512 42990512 A G OXER1 Missense_Mutation p.F270L 0.39 deleterious(0) probably_damaging(0.996) TCGA-F5-6571-01 2 5834045 5834045 G T SOX11 Missense_Mutation p.D398Y 0.52 deleterious(0) probably_damaging(0.993) TCGA-F5-6571-01 3 130287020 130287020 G A COL6A6 Missense_Mutation p.R658Q 0.35 tolerated(0.36) benign(0.042) TCGA-F5-6571-01 3 160037702 160037702 T C IFT80 Missense_Mutation p.N268S 0.10 tolerated(0.52) benign(0.002) TCGA-F5-6571-01 3 38968293 38968293 C T SCN11A Splice_Site p.X206_splice 0.34 TCGA-F5-6571-01 3 49690386 49690386 G A BSN Missense_Mutation p.D1133N 0.19 unknown(0) TCGA-F5-6571-01 4 123118413 123118413 G A KIAA1109 Missense_Mutation p.M424I 0.50 probably_damaging(0.943) TCGA-F5-6571-01 4 128565122 128565122 G T INTU Missense_Mutation p.R198I 0.63 deleterious(0.02) possibly_damaging(0.647) TCGA-F5-6571-01 4 15560806 15560806 C T CC2D2A Nonsense_Mutation p.R950* 0.55 TCGA-F5-6571-01 5 101748744 101748744 A - SLCO6A1 Frame_Shift_Del p.S526Lfs*29 0.34 TCGA-F5-6571-01 5 112173917 112173917 C T APC Nonsense_Mutation p.R876* 0.17 TCGA-F5-6571-01 5 135383085 135383085 C T TGFBI Silent p.I249I 0.55 TCGA-F5-6571-01 5 140594465 140594465 C T PCDHB13 Missense_Mutation p.P257L 0.31 deleterious_low_confidence(0.03) benign(0.058) TCGA-F5-6571-01 5 176308808 176308808 C T HK3 Missense_Mutation p.V760I 0.42 deleterious(0.03) possibly_damaging(0.902) TCGA-F5-6571-01 5 179405233 179405233 T A RNF130 Missense_Mutation p.Q273L 0.37 tolerated(0.33) benign(0.003) TCGA-F5-6571-01 5 5239922 5239922 G A ADAMTS16 Missense_Mutation p.V803M 0.08 deleterious(0.04) possibly_damaging(0.826) TCGA-F5-6571-01 6 12294306 12294306 T C EDN1 Silent p.F122F 0.10 TCGA-F5-6571-01 6 149699662 149699662 T A TAB2 Missense_Mutation p.V204E 0.39 tolerated(0.28) benign(0.028) TCGA-F5-6571-01 6 161990435 161990435 G T PARK2 Missense_Mutation p.N295K 0.33 tolerated(0.07) benign(0.075) TCGA-F5-6571-01 6 29408114 29408114 G A OR10C1 Missense_Mutation p.A108T 0.33 tolerated(0.52) benign(0.335) TCGA-F5-6571-01 6 76751711 76751711 C T IMPG1 Missense_Mutation p.R67Q 0.11 deleterious(0.02) benign(0.22) TCGA-F5-6571-01 7 123600014 123600014 G A SPAM1 Intron 0.10 TCGA-F5-6571-01 7 148801353 148801353 C T ZNF425 Missense_Mutation p.R537Q 0.35 tolerated(0.24) benign(0.033) TCGA-F5-6571-01 7 82584540 82584540 G A PCLO Missense_Mutation p.A1910V 0.09 unknown(0) TCGA-F5-6571-01 7 99754159 99754159 G C C7orf43 Missense_Mutation p.R364G 0.14 deleterious(0.02) benign(0.028) TCGA-F5-6571-01 8 11188564 11188564 T A SLC35G5 5'UTR 0.67 TCGA-F5-6571-01 8 139675948 139675948 C T COL22A1 Silent p.P1062P 0.34 TCGA-F5-6571-01 8 144941018 144941018 T C EPPK1 Missense_Mutation p.K2135R 0.08 benign(0.003) TCGA-F5-6571-01 8 38854511 38854511 G A ADAM9 5'UTR 0.50 TCGA-F5-6571-01 8 38854512 38854512 G T ADAM9 5'UTR 0.48 TCGA-F5-6571-01 9 138395540 138395540 T C MRPS2 Missense_Mutation p.F151S 0.10 tolerated(0.05) possibly_damaging(0.673) TCGA-F5-6571-01 9 35719195 35719195 A G TLN1 Missense_Mutation p.V591A 0.08 deleterious(0.05) benign(0.233) TCGA-F5-6571-01 9 70177814 70177814 G A FOXD4L5 Missense_Mutation p.P57L 0.21 deleterious_low_confidence(0.01) benign(0.005) TCGA-F5-6571-01 9 90499929 90499929 C T SPATA31E1 Missense_Mutation p.P176L 0.43 tolerated(0.09) benign(0.201) TCGA-F5-6571-01 X 100531470 100531472 ATT - TAF7L In_Frame_Del p.N332del 0.12 TCGA-F5-6571-01 X 106845872 106845872 G T FRMPD3 Missense_Mutation p.V1568L 0.62 tolerated(0.12) benign(0.026) TCGA-F5-6571-01 X 119064064 119064064 G A NKAP Missense_Mutation p.R330C 0.38 deleterious(0.03) unknown(0) TCGA-F5-6571-01 X 142803716 142803716 G T SPANXN2 Missense_Mutation p.P16H 0.12 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-F5-6571-01 X 17750558 17750558 G T NHS Missense_Mutation p.D1623Y 0.59 deleterious(0) probably_damaging(1) TCGA-F5-6571-01 X 18616708 18616708 G A CDKL5 Missense_Mutation p.V318M 0.08 tolerated_low_confidence(0.25) possibly_damaging(0.608) TCGA-F5-6571-01 X 3239201 3239201 T C MXRA5 Missense_Mutation p.T1509A 0.55 tolerated(0.65) benign(0.004) TCGA-F5-6571-01 X 49851219 49851219 C T CLCN5 Nonsense_Mutation p.R417* 0.15 TCGA-F5-6571-01 X 62569877 62569877 G A SPIN4 3'UTR 0.18 TCGA-F5-6702-01 10 128153480 128153480 A G C10orf90 Missense_Mutation p.V440A 0.10 tolerated(0.32) possibly_damaging(0.717) TCGA-F5-6702-01 11 108276213 108276213 C A C11orf65 Missense_Mutation p.R168I 0.06 deleterious(0) probably_damaging(0.936) TCGA-F5-6702-01 11 118175631 118175631 C T CD3E 5'UTR 0.17 TCGA-F5-6702-01 11 7334966 7334966 A G SYT9 Missense_Mutation p.T280A 0.48 deleterious(0) probably_damaging(0.957) TCGA-F5-6702-01 11 85375329 85375329 G A CREBZF Silent p.G197G 0.13 TCGA-F5-6702-01 11 85733487 85733487 C T PICALM Silent p.R125R 0.50 TCGA-F5-6702-01 12 128899827 128899827 C T TMEM132C Silent p.A212A 0.45 TCGA-F5-6702-01 12 132445732 132445733 TT - EP400 Frame_Shift_Del p.F190Cfs*73 0.14 TCGA-F5-6702-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.36 deleterious(0.04) possibly_damaging(0.506) TCGA-F5-6702-01 12 55886497 55886497 T A OR6C68 Silent p.L112L 0.14 TCGA-F5-6702-01 13 26970427 26970427 G T CDK8 Missense_Mutation p.D266Y 0.50 deleterious(0) possibly_damaging(0.593) TCGA-F5-6702-01 13 26970447 26970447 G C CDK8 Missense_Mutation p.K272N 0.52 tolerated(0.17) benign(0.06) TCGA-F5-6702-01 13 32808806 32808806 C T FRY Missense_Mutation p.R1875W 0.36 deleterious(0) probably_damaging(0.995) TCGA-F5-6702-01 14 106692108 106692108 C T IGHV3-21 Missense_Mutation p.R6H 0.10 deleterious_low_confidence(0.03) benign(0.412) TCGA-F5-6702-01 14 60212780 60212780 C T RTN1 Missense_Mutation p.D221N 0.23 tolerated(0.11) benign(0.017) TCGA-F5-6702-01 14 80328262 80328262 C T NRXN3 Silent p.S1047S 0.21 TCGA-F5-6702-01 14 94420676 94420676 T C ASB2 Silent p.K155K 0.10 TCGA-F5-6702-01 15 43569164 43569164 C T TGM7 Silent p.A623A 0.13 TCGA-F5-6702-01 15 67547185 67547185 C A IQCH 5'UTR 0.24 TCGA-F5-6702-01 15 89395050 89395052 AGA - ACAN In_Frame_Del p.E687del 0.14 TCGA-F5-6702-01 16 29676765 29676765 C T SPN 3'UTR 0.45 TCGA-F5-6702-01 17 10443999 10443999 G A MYH2 Missense_Mutation p.T307I 0.30 deleterious(0) possibly_damaging(0.649) TCGA-F5-6702-01 17 11865402 11865402 G A DNAH9 Silent p.S4354S 0.16 TCGA-F5-6702-01 17 26818479 26818479 C T SLC13A2 Missense_Mutation p.T249M 0.31 tolerated(0.13) benign(0.376) TCGA-F5-6702-01 17 33951544 33951544 C T AP2B1 Silent p.G218G 0.19 TCGA-F5-6702-01 17 36864101 36864107 CGTGCCT - MLLT6 Frame_Shift_Del p.V111Mfs*26 0.33 TCGA-F5-6702-01 17 44076664 44076664 C T STH Nonsense_Mutation p.Q7* 0.49 TCGA-F5-6702-01 17 47018360 47018360 T A SNF8 Missense_Mutation p.E57V 0.41 deleterious(0) possibly_damaging(0.516) TCGA-F5-6702-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6702-01 19 1053334 1053334 C T ABCA7 Missense_Mutation p.P1076L 0.24 tolerated(0.12) benign(0.043) TCGA-F5-6702-01 19 14910584 14910584 C T OR7C1 Missense_Mutation p.R122H 0.26 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-F5-6702-01 19 2226207 2226207 C T DOT1L Silent p.P1229P 0.30 TCGA-F5-6702-01 19 30499948 30499948 G A URI1 Silent p.T241T 0.09 TCGA-F5-6702-01 19 36963890 36963890 G A ZNF566 Missense_Mutation p.P53L 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-F5-6702-01 19 40368553 40368553 C T FCGBP Silent p.T4265T 0.10 TCGA-F5-6702-01 19 48815355 48815355 G A CCDC114 Missense_Mutation p.R90W 0.33 deleterious(0) probably_damaging(0.995) TCGA-F5-6702-01 19 50251426 50251426 C A TSKS Splice_Site p.X166_splice 0.13 TCGA-F5-6702-01 19 5244269 5244269 C T PTPRS Missense_Mutation p.V405I 0.25 tolerated(0.08) probably_damaging(0.989) TCGA-F5-6702-01 19 54394940 54394940 G A PRKCG Missense_Mutation p.R181H 0.31 deleterious(0.01) possibly_damaging(0.703) TCGA-F5-6702-01 1 152280001 152280001 G A FLG Missense_Mutation p.T2454M 0.17 probably_damaging(0.933) TCGA-F5-6702-01 1 158612225 158612225 A C SPTA1 Missense_Mutation p.C1571W 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6702-01 1 158650471 158650471 C T SPTA1 Missense_Mutation p.E194K 0.09 deleterious(0) probably_damaging(0.999) TCGA-F5-6702-01 1 16778357 16778357 G T NECAP2 Missense_Mutation p.A172S 0.15 tolerated(0.41) benign(0.022) TCGA-F5-6702-01 1 22332306 22332306 G T CELA3A Intron 0.15 TCGA-F5-6702-01 1 236144926 236144926 G A NID1 Missense_Mutation p.T1071M 0.18 deleterious(0.02) probably_damaging(0.946) TCGA-F5-6702-01 1 35260982 35260982 T A GJA4 3'UTR 0.18 TCGA-F5-6702-01 1 35260984 35260984 C A GJA4 3'UTR 0.18 TCGA-F5-6702-01 1 37324743 37324743 C T GRIK3 Missense_Mutation p.R357H 0.26 tolerated(0.11) benign(0.005) TCGA-F5-6702-01 1 47685631 47685631 G A TAL1 Missense_Mutation p.R253W 0.12 deleterious(0) probably_damaging(0.948) TCGA-F5-6702-01 1 5935031 5935031 C T NPHP4 Missense_Mutation p.A983T 0.15 deleterious(0.02) benign(0.312) TCGA-F5-6702-01 1 99753654 99753654 C A LPPR4 Missense_Mutation p.A119E 0.13 tolerated(0.05) benign(0.081) TCGA-F5-6702-01 20 35422061 35422061 C T SOGA1 Missense_Mutation p.R1475H 0.52 deleterious(0) probably_damaging(0.993) TCGA-F5-6702-01 20 36965562 36965562 C T BPI Silent p.F480F 0.22 TCGA-F5-6702-01 20 37356251 37356251 C T SLC32A1 Missense_Mutation p.R183W 0.10 deleterious(0) probably_damaging(0.997) TCGA-F5-6702-01 21 41034611 41034611 G A B3GALT5 3'UTR 0.08 TCGA-F5-6702-01 21 43327136 43327136 C T C2CD2 Missense_Mutation p.R428H 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-F5-6702-01 21 43905805 43905805 A G RSPH1 Missense_Mutation p.Y159H 0.20 deleterious(0) probably_damaging(0.998) TCGA-F5-6702-01 21 44838331 44838331 G A SIK1 Missense_Mutation p.A518V 0.21 tolerated(0.53) benign(0.002) TCGA-F5-6702-01 22 41170004 41170004 T G SLC25A17 Missense_Mutation p.N238T 0.30 tolerated(0.28) benign(0.007) TCGA-F5-6702-01 22 42828317 42828317 C T NFAM1 Missense_Mutation p.R16H 0.09 tolerated_low_confidence(0.59) unknown(0) TCGA-F5-6702-01 2 121746706 121746706 G A GLI2 Silent p.A1072A 0.33 TCGA-F5-6702-01 2 128081797 128081797 C T MAP3K2 Missense_Mutation p.R233Q 0.07 tolerated(0.36) possibly_damaging(0.74) TCGA-F5-6702-01 2 141202224 141202224 C T LRP1B Missense_Mutation p.R3361Q 0.18 possibly_damaging(0.553) TCGA-F5-6702-01 2 157184524 157184524 C G NR4A2 Missense_Mutation p.V333L 0.11 deleterious(0) probably_damaging(0.997) TCGA-F5-6702-01 2 178416402 178416402 C T TTC30B Missense_Mutation p.A364T 0.22 deleterious(0) probably_damaging(0.995) TCGA-F5-6702-01 2 182468789 182468789 A C CERKL Missense_Mutation p.L86V 0.19 tolerated(0.17) benign(0.002) TCGA-F5-6702-01 2 201726566 201726566 G A CLK1 Missense_Mutation p.T49I 0.08 tolerated_low_confidence(0.09) benign(0.015) TCGA-F5-6702-01 2 207652842 207652842 C T FASTKD2 Silent p.F592F 0.12 TCGA-F5-6702-01 2 210786381 210786381 G A UNC80 Missense_Mutation p.C1768Y 0.12 possibly_damaging(0.904) TCGA-F5-6702-01 2 228776997 228776997 G A DAW1 Intron 0.10 TCGA-F5-6702-01 3 125854402 125854402 C T ALDH1L1 Missense_Mutation p.R493Q 0.10 deleterious(0) probably_damaging(0.998) TCGA-F5-6702-01 3 128525286 128525286 C T RAB7A Silent p.C84C 0.11 TCGA-F5-6702-01 3 44540713 44540714 - GCAT ZNF852 Frame_Shift_Ins p.L519Hfs*15 0.27 TCGA-F5-6702-01 3 52859928 52859928 G A ITIH4 Missense_Mutation p.R245W 0.14 deleterious(0) probably_damaging(0.998) TCGA-F5-6702-01 3 7188223 7188223 G A GRM7 Missense_Mutation p.D202N 0.22 deleterious(0) probably_damaging(0.997) TCGA-F5-6702-01 4 13543614 13543614 G C NKX3-2 3'UTR 0.16 TCGA-F5-6702-01 4 66230763 66230763 G A EPHA5 Silent p.I736I 0.20 TCGA-F5-6702-01 4 69681799 69681799 G C UGT2B10 Missense_Mutation p.S21T 0.17 tolerated(0.17) benign(0.005) TCGA-F5-6702-01 5 112175639 112175639 C T APC Nonsense_Mutation p.R1450* 0.35 TCGA-F5-6702-01 5 150901015 150901015 T G FAT2 Silent p.S3713S 0.26 TCGA-F5-6702-01 5 54466374 54466374 G C CDC20B Intron 0.15 TCGA-F5-6702-01 6 10894116 10894116 C T SYCP2L Missense_Mutation p.T32M 0.25 tolerated(0.06) benign(0.105) TCGA-F5-6702-01 6 161071369 161071369 C T LPA Splice_Site p.X70_splice 0.26 TCGA-F5-6702-01 6 70410701 70410701 T C LMBRD1 Missense_Mutation p.M382V 0.17 tolerated(0.07) benign(0.085) TCGA-F5-6702-01 6 99374523 99374523 G C FBXL4 Missense_Mutation p.F114L 0.07 tolerated(0.36) benign(0.232) TCGA-F5-6702-01 7 2748809 2748809 C T AMZ1 Silent p.P234P 0.10 TCGA-F5-6702-01 7 45222983 45222983 G A RAMP3 Missense_Mutation p.R140H 0.19 tolerated(0.16) benign(0.097) TCGA-F5-6702-01 7 87810862 87810862 C T ADAM22 Silent p.D817D 0.08 TCGA-F5-6702-01 7 93055794 93055794 C T CALCR Silent p.A467A 0.18 TCGA-F5-6702-01 8 11841973 11841973 A G DEFB135 Silent p.S36S 0.15 TCGA-F5-6702-01 8 143614774 143614774 G A BAI1 Missense_Mutation p.D1173N 0.45 tolerated(0.27) possibly_damaging(0.831) TCGA-F5-6702-01 9 114348377 114348377 G A PTGR1 Missense_Mutation p.T93M 0.08 deleterious(0.03) benign(0.161) TCGA-F5-6702-01 9 37020739 37020739 C A PAX5 Missense_Mutation p.V36L 0.09 deleterious(0.03) possibly_damaging(0.493) TCGA-F5-6702-01 X 101098224 101098224 A G NXF5 5'UTR 0.13 TCGA-F5-6702-01 X 1327722 1327722 C T CRLF2 Silent p.R53R 0.45 TCGA-F5-6702-01 X 151818310 151818310 C T GABRQ Missense_Mutation p.T239M 0.55 tolerated(0.16) benign(0.231) TCGA-F5-6702-01 X 71360137 71360137 G A NHSL2 Silent p.A913A 0.58 TCGA-F5-6810-01 10 108389038 108389038 C T SORCS1 Missense_Mutation p.V862M 0.49 deleterious(0.02) probably_damaging(0.938) TCGA-F5-6810-01 10 114912180 114912180 G A TCF7L2 Nonsense_Mutation p.W417* 0.63 TCGA-F5-6810-01 10 124336030 124336030 C T DMBT1 Silent p.T133T 0.27 TCGA-F5-6810-01 10 124908061 124908061 C A HMX2 Missense_Mutation p.P56Q 0.26 tolerated_low_confidence(0.17) benign(0.004) TCGA-F5-6810-01 10 127431673 127431673 C G EDRF1 Silent p.L806L 0.29 TCGA-F5-6810-01 10 131638525 131638525 G A EBF3 Silent p.N536N 0.21 TCGA-F5-6810-01 10 133980502 133980502 T C JAKMIP3 Silent p.L834L 0.41 TCGA-F5-6810-01 10 134751053 134751053 T C TTC40 Intron 0.23 TCGA-F5-6810-01 10 60558940 60558940 T C BICC1 Silent p.P551P 0.17 TCGA-F5-6810-01 11 10794709 10794709 G C CTR9 Missense_Mutation p.K872N 0.40 tolerated(0.07) benign(0.122) TCGA-F5-6810-01 11 132307165 132307165 C T OPCML Silent p.L205L 0.36 TCGA-F5-6810-01 11 134237191 134237191 G T GLB1L2 Missense_Mutation p.W282L 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6810-01 11 18478299 18478299 C T LDHAL6A Silent p.S24S 0.20 TCGA-F5-6810-01 11 49170190 49170190 C T FOLH1 Splice_Site p.X688_splice 0.14 TCGA-F5-6810-01 11 56184989 56184989 G A OR5R1 Silent p.T240T 0.21 TCGA-F5-6810-01 11 56185439 56185439 G T OR5R1 Missense_Mutation p.N90K 0.15 tolerated(0.62) benign(0.424) TCGA-F5-6810-01 11 6008140 6008140 G T OR52L1 Missense_Mutation p.F7L 0.15 tolerated_low_confidence(0.69) benign(0) TCGA-F5-6810-01 11 64419028 64419028 C T NRXN2 Missense_Mutation p.V873M 0.27 tolerated(0.09) probably_damaging(0.993) TCGA-F5-6810-01 11 64575041 64575041 G T MEN1 Missense_Mutation p.L261I 0.22 tolerated(0.08) possibly_damaging(0.779) TCGA-F5-6810-01 11 66114657 66114657 C G B3GNT1 Silent p.L120L 0.46 TCGA-F5-6810-01 11 67926240 67926240 C T SUV420H1 Missense_Mutation p.A525T 0.39 deleterious(0.03) benign(0.028) TCGA-F5-6810-01 12 110246182 110246182 G A TRPV4 Missense_Mutation p.R160W 0.46 deleterious(0) probably_damaging(0.98) TCGA-F5-6810-01 12 122359381 122359381 C T WDR66 Missense_Mutation p.T57M 0.07 tolerated_low_confidence(0.11) benign(0.001) TCGA-F5-6810-01 12 21448559 21448559 C A SLCO1A2 Missense_Mutation p.V415F 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-F5-6810-01 12 22778124 22778126 CTC - ETNK1 In_Frame_Del p.S10del 0.50 TCGA-F5-6810-01 12 32446994 32446994 G T BICD1 Nonsense_Mutation p.E165* 0.27 TCGA-F5-6810-01 12 40715869 40715869 C T LRRK2 Nonsense_Mutation p.R1735* 0.51 TCGA-F5-6810-01 12 49462875 49462875 C T RHEBL1 Missense_Mutation p.A23T 0.21 tolerated(1) benign(0.178) TCGA-F5-6810-01 12 57553633 57553633 C T LRP1 Silent p.A608A 0.25 TCGA-F5-6810-01 12 67691432 67691432 G T CAND1 Missense_Mutation p.G246V 0.27 deleterious(0.03) probably_damaging(0.995) TCGA-F5-6810-01 12 81111120 81111120 G A MYF5 Missense_Mutation p.R93Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6810-01 14 29237154 29237154 G A FOXG1 Silent p.Q223Q 0.73 TCGA-F5-6810-01 15 24926137 24926137 G A NPAP1 3'UTR 0.30 TCGA-F5-6810-01 15 34119469 34119469 A T RYR3 Missense_Mutation p.D3772V 0.21 probably_damaging(1) TCGA-F5-6810-01 15 50555433 50555433 C T HDC Missense_Mutation p.G68E 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6810-01 15 56207521 56207521 G A NEDD4 Silent p.S503S 0.22 TCGA-F5-6810-01 15 73735609 73735609 G A C15orf60 Missense_Mutation p.R28H 0.16 deleterious(0) probably_damaging(0.999) TCGA-F5-6810-01 15 79586981 79586981 T A ANKRD34C Missense_Mutation p.L452H 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6810-01 15 83328372 83328372 G A AP3B2 Silent p.S1063S 0.52 TCGA-F5-6810-01 15 99512814 99512814 G T PGPEP1L Missense_Mutation p.Q71K 0.23 tolerated(0.7) benign(0.017) TCGA-F5-6810-01 16 11971432 11971432 G A GSPT1 Silent p.N478N 0.17 TCGA-F5-6810-01 16 12996166 12996166 G A SHISA9 Missense_Mutation p.G82D 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6810-01 16 12996167 12996167 C A SHISA9 Silent p.G82G 0.13 TCGA-F5-6810-01 16 28857625 28857625 G C TUFM 5'UTR 0.18 TCGA-F5-6810-01 16 29001103 29001103 C T LAT Missense_Mutation p.R225W 0.44 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-F5-6810-01 16 3779420 3779420 G A CREBBP Silent p.N1876N 0.15 TCGA-F5-6810-01 16 4165330 4165330 G T ADCY9 Silent p.S38S 0.15 TCGA-F5-6810-01 16 57938667 57938667 C T CNGB1 Missense_Mutation p.V869I 0.17 deleterious(0.01) probably_damaging(0.915) TCGA-F5-6810-01 16 58610487 58610488 - T CNOT1 Splice_Site p.X529_splice 0.20 TCGA-F5-6810-01 16 67859655 67859655 C A TSNAXIP1 Missense_Mutation p.N246K 0.18 deleterious(0) probably_damaging(0.992) TCGA-F5-6810-01 16 69202763 69202763 G A CIRH1A Missense_Mutation p.V662M 0.63 deleterious(0) probably_damaging(0.958) TCGA-F5-6810-01 16 77850913 77850913 T C VAT1L Missense_Mutation p.V110A 0.22 deleterious(0) benign(0.43) TCGA-F5-6810-01 16 83711918 83711918 G A CDH13 Missense_Mutation p.V511I 0.19 tolerated(0.05) probably_damaging(0.996) TCGA-F5-6810-01 16 84492739 84492739 G A ATP2C2 Missense_Mutation p.E721K 0.52 deleterious(0) probably_damaging(0.998) TCGA-F5-6810-01 16 86582108 86582108 C G MTHFSD Missense_Mutation p.A105P 0.61 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6810-01 17 3582919 3582919 G A P2RX5 Silent p.N408N 0.25 TCGA-F5-6810-01 17 74739480 74739480 C G MFSD11 Missense_Mutation p.S146R 0.13 deleterious(0) probably_damaging(0.978) TCGA-F5-6810-01 17 7578217 7578218 GT - TP53 Frame_Shift_Del p.T211Ffs*4 0.41 TCGA-F5-6810-01 17 80402370 80402370 C T C17orf62 Silent p.T132T 0.36 TCGA-F5-6810-01 18 44121837 44121837 G A LOXHD1 Missense_Mutation p.T161M 0.29 tolerated(0.33) benign(0.41) TCGA-F5-6810-01 18 71790623 71790623 C T FBXO15 Missense_Mutation p.R373H 0.69 tolerated(0.22) benign(0.01) TCGA-F5-6810-01 19 15483911 15483911 G A AKAP8 Silent p.F204F 0.23 TCGA-F5-6810-01 19 30097222 30097222 G T POP4 5'UTR 0.19 TCGA-F5-6810-01 19 36349767 36349767 G A KIRREL2 Splice_Site p.X174_splice 0.21 TCGA-F5-6810-01 19 36884491 36884491 C T ZFP82 Missense_Mutation p.E251K 0.14 tolerated(0.09) probably_damaging(0.927) TCGA-F5-6810-01 19 37309702 37309702 A T ZNF790 Missense_Mutation p.F515Y 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6810-01 19 38958429 38958429 G T RYR1 Missense_Mutation p.A1120S 0.07 possibly_damaging(0.68) TCGA-F5-6810-01 19 43372324 43372324 A T PSG1 Missense_Mutation p.L391H 0.22 tolerated(0.24) probably_damaging(0.941) TCGA-F5-6810-01 19 4652896 4652896 C T TNFAIP8L1 3'UTR 0.27 TCGA-F5-6810-01 19 48800504 48800504 G C CCDC114 Missense_Mutation p.P581R 0.17 deleterious(0) benign(0.44) TCGA-F5-6810-01 1 111826017 111826017 G A CHIAP2 RNA 0.28 TCGA-F5-6810-01 1 114500753 114500753 C A HIPK1 Silent p.V607V 0.24 TCGA-F5-6810-01 1 161144929 161144929 G A B4GALT3 Missense_Mutation p.R115C 0.34 deleterious(0.01) possibly_damaging(0.893) TCGA-F5-6810-01 1 161693398 161693398 C T FCRLB Silent p.L98L 0.24 TCGA-F5-6810-01 1 161719589 161719589 G C DUSP12 5'UTR 0.24 TCGA-F5-6810-01 1 181702058 181702058 C T CACNA1E Missense_Mutation p.R946C 0.46 deleterious(0.04) possibly_damaging(0.689) TCGA-F5-6810-01 1 181764060 181764060 A G CACNA1E Missense_Mutation p.N2030D 0.46 tolerated(0.35) possibly_damaging(0.678) TCGA-F5-6810-01 1 18958029 18958029 G T PAX7 5'UTR 0.20 TCGA-F5-6810-01 1 201184799 201184799 G T IGFN1 Missense_Mutation p.G3043V 0.39 probably_damaging(0.994) TCGA-F5-6810-01 1 204957878 204957878 C T NFASC Missense_Mutation p.T904M 0.41 deleterious(0.02) probably_damaging(0.993) TCGA-F5-6810-01 1 215848157 215848157 C T USH2A Missense_Mutation p.A4366T 0.20 benign(0.026) TCGA-F5-6810-01 1 225546210 225546210 A G DNAH14 Missense_Mutation p.R3021G 0.32 deleterious(0) possibly_damaging(0.537) TCGA-F5-6810-01 1 225546211 225546211 G A DNAH14 Missense_Mutation p.R3021K 0.32 tolerated(0.21) benign(0.415) TCGA-F5-6810-01 1 228612641 228612641 C T HIST3H3 Missense_Mutation p.R129H 0.43 tolerated_low_confidence(0.06) benign(0.014) TCGA-F5-6810-01 1 237947890 237947890 C G RYR2 Missense_Mutation p.T4293S 0.35 benign(0) TCGA-F5-6810-01 1 241815672 241815672 G C WDR64 5'UTR 0.22 TCGA-F5-6810-01 1 245850178 245850178 T C KIF26B Missense_Mutation p.F1298S 0.16 tolerated(0.09) unknown(0) TCGA-F5-6810-01 1 245850179 245850179 C A KIF26B Missense_Mutation p.F1298L 0.16 tolerated(0.05) unknown(0) TCGA-F5-6810-01 1 248308739 248308739 G T OR2M5 Missense_Mutation p.C97F 0.25 deleterious(0) probably_damaging(0.969) TCGA-F5-6810-01 1 25291169 25291170 - C RUNX3 5'UTR 0.64 TCGA-F5-6810-01 1 41945126 41945126 G T EDN2 Missense_Mutation p.A164D 0.27 tolerated(0.15) benign(0.287) TCGA-F5-6810-01 1 82456108 82456108 C G LPHN2 Missense_Mutation p.A1164G 0.17 tolerated(0.59) possibly_damaging(0.574) TCGA-F5-6810-01 20 20340955 20340955 G A C20orf26 Silent p.E1205E 0.16 TCGA-F5-6810-01 20 3674972 3674972 C T SIGLEC1 Missense_Mutation p.R1051H 0.38 deleterious(0.03) possibly_damaging(0.458) TCGA-F5-6810-01 20 47641998 47641998 G A ARFGEF2 Missense_Mutation p.R1635Q 0.40 deleterious(0) probably_damaging(0.977) TCGA-F5-6810-01 20 48522728 48522728 T C SPATA2 Missense_Mutation p.T331A 0.51 tolerated(1) benign(0.002) TCGA-F5-6810-01 22 50355385 50355385 G A PIM3 Missense_Mutation p.R181H 0.32 deleterious(0.03) benign(0.013) TCGA-F5-6810-01 2 10560161 10560161 C T HPCAL1 Missense_Mutation p.S93L 0.43 deleterious(0) benign(0.067) TCGA-F5-6810-01 2 131487830 131487830 T C GPR148 3'UTR 0.43 TCGA-F5-6810-01 2 131799470 131799470 A G ARHGEF4 Missense_Mutation p.N474D 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6810-01 2 179598066 179598066 G C TTN Silent p.L5318L 0.30 TCGA-F5-6810-01 2 191064623 191064623 C T C2orf88 Missense_Mutation p.P13S 0.52 tolerated(0.27) benign(0.397) TCGA-F5-6810-01 2 209190918 209190918 T A PIKFYVE Nonsense_Mutation p.L1128* 0.20 TCGA-F5-6810-01 2 231077539 231077539 G C SP110 Missense_Mutation p.P174A 0.30 tolerated(0.45) possibly_damaging(0.728) TCGA-F5-6810-01 2 25972805 25972805 G T ASXL2 Silent p.P540P 0.52 TCGA-F5-6810-01 2 5837886 5837886 T C SOX11 3'UTR 0.44 TCGA-F5-6810-01 2 5840743 5840743 T A SOX11 3'UTR 0.20 TCGA-F5-6810-01 2 74745461 74745461 A G DQX1 3'UTR 0.24 TCGA-F5-6810-01 3 105459369 105459369 G C CBLB Missense_Mutation p.Q318E 0.25 deleterious(0) probably_damaging(0.983) TCGA-F5-6810-01 3 11301246 11301246 C T HRH1 Missense_Mutation p.R175C 0.30 tolerated(0.14) benign(0.001) TCGA-F5-6810-01 3 113375307 113375307 C T KIAA2018 Missense_Mutation p.G1741E 0.21 probably_damaging(0.928) TCGA-F5-6810-01 3 121634527 121634527 G T SLC15A2 Missense_Mutation p.M228I 0.18 deleterious(0) probably_damaging(0.919) TCGA-F5-6810-01 3 180359822 180359822 C T CCDC39 Silent p.A611A 0.33 TCGA-F5-6810-01 3 184769695 184769695 G A VPS8 Missense_Mutation p.R1390H 0.49 tolerated(0.51) benign(0.001) TCGA-F5-6810-01 3 35770924 35770924 G A ARPP21 Missense_Mutation p.G418E 0.11 tolerated(0.12) benign(0.139) TCGA-F5-6810-01 3 50337931 50337931 G A HYAL1 Missense_Mutation p.R431W 0.13 deleterious(0) benign(0.156) TCGA-F5-6810-01 3 52874515 52874515 C T TMEM110 Missense_Mutation p.V294I 0.39 deleterious_low_confidence(0.03) benign(0.058) TCGA-F5-6810-01 3 97744512 97744512 G T GABRR3 RNA 0.20 TCGA-F5-6810-01 4 10444978 10444978 A G ZNF518B Missense_Mutation p.L992P 0.22 deleterious(0) probably_damaging(0.998) TCGA-F5-6810-01 4 126241801 126241801 A T FAT4 Missense_Mutation p.D1412V 0.14 probably_damaging(0.987) TCGA-F5-6810-01 4 166021848 166021848 C T TMEM192 Missense_Mutation p.R124Q 0.38 deleterious(0.05) benign(0.128) TCGA-F5-6810-01 4 175896972 175896972 A G ADAM29 Missense_Mutation p.N99S 0.27 deleterious(0.01) possibly_damaging(0.602) TCGA-F5-6810-01 4 30724038 30724038 G A PCDH7 Missense_Mutation p.A332T 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6810-01 4 44626788 44626788 A G YIPF7 Silent p.V170V 0.22 TCGA-F5-6810-01 4 74318319 74318319 G A AFP Missense_Mutation p.A544T 0.24 tolerated(0.37) possibly_damaging(0.805) TCGA-F5-6810-01 4 77231153 77231154 - T FAM47E-STBD1 3'UTR 0.12 TCGA-F5-6810-01 4 8062751 8062751 C T ABLIM2 Missense_Mutation p.A236T 0.47 deleterious(0) probably_damaging(1) TCGA-F5-6810-01 4 83821861 83821861 A T THAP9 5'Flank 0.15 TCGA-F5-6810-01 5 110440461 110440461 T C WDR36 Silent p.A380A 0.30 TCGA-F5-6810-01 5 112175390 112175390 C T APC Nonsense_Mutation p.Q1367* 0.84 TCGA-F5-6810-01 5 127487065 127487065 T A SLC12A2 Missense_Mutation p.I747N 0.48 tolerated(0.05) probably_damaging(0.965) TCGA-F5-6810-01 5 127487066 127487066 T A SLC12A2 Silent p.I747I 0.49 TCGA-F5-6810-01 5 129019860 129019860 T C ADAMTS19 Silent p.T898T 0.53 TCGA-F5-6810-01 5 140222869 140222869 G T PCDHA8 Missense_Mutation p.G655C 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6810-01 5 154173271 154173271 G A LARP1 Missense_Mutation p.G209R 0.24 tolerated(0.48) possibly_damaging(0.744) TCGA-F5-6810-01 5 154242923 154242923 G T CNOT8 Nonsense_Mutation p.E29* 0.47 TCGA-F5-6810-01 5 169724712 169724712 T C LCP2 5'UTR 0.43 TCGA-F5-6810-01 5 77406143 77406143 G A AP3B1 Missense_Mutation p.S762F 0.25 deleterious(0) possibly_damaging(0.485) TCGA-F5-6810-01 5 86679583 86679583 T G RASA1 Missense_Mutation p.F915C 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6810-01 6 119345198 119345198 C T FAM184A Missense_Mutation p.D314N 0.36 deleterious(0.02) possibly_damaging(0.535) TCGA-F5-6810-01 6 127775147 127775147 C A SOGA3 3'UTR 0.36 TCGA-F5-6810-01 6 33411699 33411699 G A SYNGAP1 Missense_Mutation p.G1124R 0.38 tolerated(0.15) possibly_damaging(0.552) TCGA-F5-6810-01 6 35477481 35477481 C T TULP1 Silent p.A216A 0.40 TCGA-F5-6810-01 6 5404791 5404791 A C FARS2 Missense_Mutation p.K210T 0.37 tolerated(0.27) benign(0.002) TCGA-F5-6810-01 6 88411182 88411182 G A AKIRIN2 Missense_Mutation p.S74F 0.10 tolerated(0.08) possibly_damaging(0.739) TCGA-F5-6810-01 6 90457134 90457134 C T MDN1 Missense_Mutation p.R1273H 0.32 probably_damaging(1) TCGA-F5-6810-01 7 137092660 137092660 T C DGKI Missense_Mutation p.T969A 0.31 tolerated(0.52) benign(0.007) TCGA-F5-6810-01 7 148801629 148801629 G A ZNF425 Missense_Mutation p.P445L 0.31 tolerated(0.18) benign(0.084) TCGA-F5-6810-01 7 149489009 149489009 C T SSPO RNA 0.45 TCGA-F5-6810-01 7 150936806 150936806 G C SMARCD3 Missense_Mutation p.N400K 0.50 tolerated(0.09) benign(0.241) TCGA-F5-6810-01 7 1510506 1510506 G T INTS1 Missense_Mutation p.P2145T 0.51 deleterious(0) probably_damaging(0.999) TCGA-F5-6810-01 7 31683449 31683449 C T CCDC129 Missense_Mutation p.P848L 0.21 deleterious(0.02) possibly_damaging(0.721) TCGA-F5-6810-01 7 42063133 42063133 G A GLI3 Silent p.I477I 0.15 TCGA-F5-6810-01 7 79846950 79846950 G T GNAI1 3'UTR 0.39 TCGA-F5-6810-01 7 93540191 93540204 TCCCTTCAAGGAGC - GNGT1 Frame_Shift_Del p.P63Qfs*40 0.11 TCGA-F5-6810-01 7 95157379 95157379 C A ASB4 Silent p.R248R 0.33 TCGA-F5-6810-01 8 126015511 126015511 G C SQLE Missense_Mutation p.V129L 0.38 deleterious(0) probably_damaging(0.92) TCGA-F5-6810-01 8 139763756 139763756 T A COL22A1 Splice_Site p.X678_splice 0.16 TCGA-F5-6810-01 8 1616574 1616574 G A DLGAP2 Silent p.T550T 0.32 TCGA-F5-6810-01 8 30701118 30701118 A T TEX15 Missense_Mutation p.F1806I 0.11 deleterious(0) probably_damaging(0.998) TCGA-F5-6810-01 8 41551422 41551422 C T ANK1 Missense_Mutation p.V1217I 0.57 tolerated(1) possibly_damaging(0.823) TCGA-F5-6810-01 8 57026298 57026298 C T MOS Missense_Mutation p.V82I 0.15 tolerated(0.18) possibly_damaging(0.641) TCGA-F5-6810-01 9 101831958 101831958 C T COL15A1 Silent p.P1319P 0.42 TCGA-F5-6810-01 9 115336534 115336534 G T KIAA1958 Missense_Mutation p.W58C 0.38 deleterious(0) probably_damaging(0.953) TCGA-F5-6810-01 9 135564296 135564296 A C GTF3C4 Missense_Mutation p.Q811H 0.12 deleterious(0.01) possibly_damaging(0.855) TCGA-F5-6810-01 9 86914565 86914565 C G SLC28A3 Missense_Mutation p.Q200H 0.16 deleterious(0.02) benign(0.078) TCGA-F5-6810-01 X 118221889 118221890 - A KIAA1210 Frame_Shift_Ins p.A1102Cfs*9 0.18 TCGA-F5-6810-01 X 123517620 123517620 A C TENM1 Silent p.V2387V 0.28 TCGA-F5-6810-01 X 91138096 91138096 G T PCDH11X Intron 0.56 TCGA-F5-6811-01 10 103345880 103345880 C T POLL Missense_Mutation p.R50H 0.19 deleterious(0.01) benign(0.146) TCGA-F5-6811-01 10 13276299 13276299 G A UCMA 5'UTR 0.15 TCGA-F5-6811-01 10 17908691 17908691 C A MRC1L1 Missense_Mutation p.P635Q 0.56 probably_damaging(0.976) TCGA-F5-6811-01 11 113679905 113679905 G A USP28 Nonsense_Mutation p.Q682* 0.36 TCGA-F5-6811-01 11 56237926 56237926 C T OR5M3 Silent p.T16T 0.44 TCGA-F5-6811-01 11 6048216 6048216 G A OR56A1 Missense_Mutation p.A240V 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6811-01 11 89443493 89443493 T A TRIM77 Silent p.S9S 0.20 TCGA-F5-6811-01 11 92532069 92532069 A G FAT3 Missense_Mutation p.S1964G 0.29 benign(0.001) TCGA-F5-6811-01 11 92703048 92703048 G A MTNR1B Missense_Mutation p.V53M 0.26 deleterious(0.02) possibly_damaging(0.509) TCGA-F5-6811-01 12 100708281 100708281 T G SCYL2 Missense_Mutation p.D328E 0.08 tolerated(0.53) benign(0.009) TCGA-F5-6811-01 12 104031890 104031890 G A STAB2 Missense_Mutation p.R269H 0.17 tolerated(0.89) benign(0.002) TCGA-F5-6811-01 12 121698120 121698120 A G CAMKK2 Splice_Site p.X266_splice 0.22 TCGA-F5-6811-01 12 2614006 2614006 A - CACNA1C Splice_Site p.X372_splice 0.19 TCGA-F5-6811-01 12 53899461 53899461 G A TARBP2 Missense_Mutation p.R257Q 0.33 tolerated(0.36) benign(0.021) TCGA-F5-6811-01 13 42032565 42032565 G A RGCC Missense_Mutation p.S65N 0.51 tolerated(0.08) possibly_damaging(0.817) TCGA-F5-6811-01 13 98865617 98865617 T C FARP1 Missense_Mutation p.S41P 0.58 tolerated(0.37) benign(0.001) TCGA-F5-6811-01 14 62547981 62547981 A G SYT16 Missense_Mutation p.S475G 0.16 deleterious(0.02) benign(0.057) TCGA-F5-6811-01 14 73572623 73572623 A G RBM25 Missense_Mutation p.E404G 0.10 unknown(0) TCGA-F5-6811-01 14 73712379 73712379 G A PAPLN Missense_Mutation p.R69Q 0.35 deleterious(0.04) possibly_damaging(0.851) TCGA-F5-6811-01 15 27182398 27182398 C T GABRA5 Missense_Mutation p.A216V 0.18 tolerated(0.06) possibly_damaging(0.66) TCGA-F5-6811-01 15 54556406 54556406 G A UNC13C Silent p.K1163K 0.29 TCGA-F5-6811-01 15 65450131 65450131 G T CLPX Missense_Mutation p.A337E 0.24 deleterious(0.03) probably_damaging(0.983) TCGA-F5-6811-01 15 72691086 72691086 G A TMEM202 Silent p.T58T 0.28 TCGA-F5-6811-01 16 16162034 16162034 G A ABCC1 Missense_Mutation p.V567I 0.28 deleterious(0) probably_damaging(0.992) TCGA-F5-6811-01 16 67969892 67969892 A G PSMB10 Silent p.T119T 0.16 TCGA-F5-6811-01 16 68835727 68835727 C T CDH1 Silent p.T106T 0.21 TCGA-F5-6811-01 17 17061868 17061868 A G MPRIP Missense_Mutation p.E533G 0.09 deleterious(0) benign(0.369) TCGA-F5-6811-01 17 40315941 40315941 C A KCNH4 Missense_Mutation p.K720N 0.60 tolerated(0.18) probably_damaging(0.997) TCGA-F5-6811-01 17 58506840 58506840 C T C17orf64 Missense_Mutation p.R183W 0.16 deleterious(0) probably_damaging(0.988) TCGA-F5-6811-01 17 72945464 72945464 C T OTOP3 Missense_Mutation p.R582C 0.54 deleterious(0) probably_damaging(1) TCGA-F5-6811-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.66 tolerated(0.11) benign(0.308) TCGA-F5-6811-01 18 71790624 71790624 G A FBXO15 Missense_Mutation p.R373C 0.56 deleterious(0) possibly_damaging(0.794) TCGA-F5-6811-01 19 11796353 11796353 T G ZNF833P RNA 0.39 TCGA-F5-6811-01 19 31039579 31039579 T C ZNF536 Missense_Mutation p.L1018P 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6811-01 19 43098027 43098027 C T CEACAM8 Silent p.P30P 0.25 TCGA-F5-6811-01 19 45912960 45912960 C T ERCC1 3'Flank 0.08 TCGA-F5-6811-01 19 48800266 48800266 C T CCDC114 Silent p.P660P 0.15 TCGA-F5-6811-01 19 49132648 49132648 C T SPHK2 Missense_Mutation p.P528L 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6811-01 19 50208286 50208286 C T CPT1C Missense_Mutation p.T265M 0.28 deleterious(0) probably_damaging(0.985) TCGA-F5-6811-01 19 50775819 50775819 C T MYH14 Missense_Mutation p.R1100C 0.20 deleterious(0) probably_damaging(0.99) TCGA-F5-6811-01 19 57832140 57832140 C T ZNF543 5'UTR 0.35 TCGA-F5-6811-01 19 7975192 7975192 C G MAP2K7 Silent p.G127G 0.39 TCGA-F5-6811-01 1 109780387 109780387 G A SARS Silent p.A474A 0.25 TCGA-F5-6811-01 1 12569127 12569127 G T VPS13D 3'UTR 0.25 TCGA-F5-6811-01 1 158815633 158815633 G A MNDA Missense_Mutation p.G276E 0.41 tolerated(0.08) possibly_damaging(0.85) TCGA-F5-6811-01 1 173772350 173772350 T - CENPL Frame_Shift_Del p.E284Dfs*67 0.15 TCGA-F5-6811-01 1 176564627 176564627 C T PAPPA2 Silent p.H629H 0.49 TCGA-F5-6811-01 1 205238518 205238518 C T TMCC2 Silent p.S396S 0.33 TCGA-F5-6811-01 1 207110769 207110769 T C PIGR Missense_Mutation p.K239R 0.13 tolerated(0.2) benign(0.302) TCGA-F5-6811-01 1 207314546 207314546 G A C4BPA Missense_Mutation p.G457S 0.62 deleterious(0.02) probably_damaging(1) TCGA-F5-6811-01 1 2077532 2077532 G A PRKCZ Missense_Mutation p.E207K 0.43 tolerated(0.62) benign(0.217) TCGA-F5-6811-01 1 21805847 21805847 T G NBPF3 Missense_Mutation p.W388G 0.27 tolerated(0.35) benign(0.023) TCGA-F5-6811-01 1 218607468 218607468 C T TGFB2 Silent p.I213I 0.25 TCGA-F5-6811-01 1 223285573 223285573 G A TLR5 Silent p.A267A 0.22 TCGA-F5-6811-01 1 247752283 247752283 C A OR2G2 Missense_Mutation p.L208I 0.23 tolerated(0.79) benign(0.075) TCGA-F5-6811-01 1 248263455 248263455 C T OR2L13 Missense_Mutation p.R260W 0.47 deleterious(0.02) benign(0.192) TCGA-F5-6811-01 1 248436585 248436585 C T OR2T33 Missense_Mutation p.E178K 0.28 deleterious(0.01) probably_damaging(0.939) TCGA-F5-6811-01 1 35228365 35228365 C A GJB4 3'UTR 0.35 TCGA-F5-6811-01 1 42922602 42922602 G A PPCS Silent p.E122E 0.38 TCGA-F5-6811-01 1 84417546 84417546 C T TTLL7 Missense_Mutation p.G47R 0.32 deleterious(0) probably_damaging(0.994) TCGA-F5-6811-01 20 57766734 57766734 C T ZNF831 Silent p.A220A 0.15 TCGA-F5-6811-01 20 60504710 60504710 C T CDH4 Silent p.A683A 0.08 TCGA-F5-6811-01 22 20132830 20132830 C T ZDHHC8 Intron 0.47 TCGA-F5-6811-01 22 22311774 22311774 G A TOP3B Silent p.S767S 0.24 TCGA-F5-6811-01 22 23055632 23055632 G A IGLV3-21 Missense_Mutation p.G99R 0.40 tolerated(0.07) benign(0.03) TCGA-F5-6811-01 22 41969714 41969714 C T CSDC2 Missense_Mutation p.R78C 0.56 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6811-01 22 50555769 50555769 C T MOV10L1 Silent p.T481T 0.24 TCGA-F5-6811-01 2 110259191 110259191 C G SH3RF3 Silent p.T864T 0.19 TCGA-F5-6811-01 2 119750754 119750754 A G MARCO Missense_Mutation p.E436G 0.36 deleterious(0) unknown(0) TCGA-F5-6811-01 2 141459741 141459741 C G LRP1B Missense_Mutation p.V2091L 0.25 benign(0.097) TCGA-F5-6811-01 2 166165282 166165282 G T SCN2A Missense_Mutation p.D195Y 0.20 deleterious(0.03) probably_damaging(1) TCGA-F5-6811-01 2 176948352 176948352 C T EVX2 Silent p.P51P 0.16 TCGA-F5-6811-01 2 228884497 228884497 G A SPHKAP Missense_Mutation p.A358V 0.26 tolerated(0.59) benign(0.004) TCGA-F5-6811-01 2 242757514 242757514 G A NEU4 Missense_Mutation p.A212T 0.16 tolerated(0.38) benign(0.114) TCGA-F5-6811-01 2 48844960 48844960 C T GTF2A1L 5'Flank 0.24 TCGA-F5-6811-01 2 73475050 73475050 T C CCT7 Missense_Mutation p.V260A 0.54 tolerated(0.18) benign(0.045) TCGA-F5-6811-01 2 74789458 74789458 C T M1AP Silent p.P389P 0.20 TCGA-F5-6811-01 2 85890543 85890543 C T SFTPB Missense_Mutation p.G322R 0.35 tolerated(0.76) benign(0.003) TCGA-F5-6811-01 3 142525010 142525010 G A TRPC1 Missense_Mutation p.R772Q 0.11 deleterious(0) probably_damaging(0.963) TCGA-F5-6811-01 3 183368865 183368865 G A KLHL24 Missense_Mutation p.V241I 0.10 tolerated(0.2) possibly_damaging(0.905) TCGA-F5-6811-01 3 183963060 183963060 C T ALG3 Silent p.V177V 0.33 TCGA-F5-6811-01 3 184102473 184102473 G A CHRD Missense_Mutation p.R530H 0.74 deleterious(0.01) benign(0.01) TCGA-F5-6811-01 3 27760315 27760315 C T EOMES Missense_Mutation p.V410M 0.10 tolerated(0.13) probably_damaging(0.937) TCGA-F5-6811-01 3 52236549 52236549 C T ALAS1 Nonsense_Mutation p.Q76* 0.44 TCGA-F5-6811-01 3 64085170 64085170 C T PRICKLE2 Missense_Mutation p.A698T 0.11 deleterious(0.02) possibly_damaging(0.521) TCGA-F5-6811-01 3 87027942 87027942 G A VGLL3 Missense_Mutation p.A46V 0.21 tolerated(0.08) probably_damaging(0.998) TCGA-F5-6811-01 4 126336140 126336140 C T FAT4 Missense_Mutation p.R2008W 0.26 probably_damaging(0.996) TCGA-F5-6811-01 4 154533465 154533465 G A KIAA0922 Silent p.V1160V 0.19 TCGA-F5-6811-01 4 2209835 2209836 - A POLN Frame_Shift_Ins p.C198Lfs*2 0.29 TCGA-F5-6811-01 4 25678394 25678394 A G SLC34A2 3'UTR 0.09 TCGA-F5-6811-01 4 40892392 40892392 G A APBB2 Silent p.R506R 0.48 TCGA-F5-6811-01 4 41992692 41992692 C T SLC30A9 Silent p.A8A 0.23 TCGA-F5-6811-01 5 112175258 112175259 - T APC Frame_Shift_Ins p.P1324Sfs*8 0.38 TCGA-F5-6811-01 5 140202971 140202971 C T PCDHA5 Silent p.R537R 0.42 TCGA-F5-6811-01 5 140553098 140553098 G A PCDHB7 Missense_Mutation p.V228M 0.52 deleterious_low_confidence(0.01) possibly_damaging(0.586) TCGA-F5-6811-01 5 140563764 140563764 G A PCDHB16 Missense_Mutation p.E544K 0.43 deleterious_low_confidence(0.01) benign(0.228) TCGA-F5-6811-01 5 140591537 140591537 G A PCDHB12 3'UTR 0.38 TCGA-F5-6811-01 5 140744083 140744083 C T PCDHGA5 Silent p.R62R 0.33 TCGA-F5-6811-01 5 33534957 33534957 C A ADAMTS12 Missense_Mutation p.Q1529H 0.14 deleterious(0) probably_damaging(0.946) TCGA-F5-6811-01 5 65288660 65288660 G A ERBB2IP Silent p.P38P 0.24 TCGA-F5-6811-01 5 83433096 83433096 C T EDIL3 Silent p.E144E 0.09 TCGA-F5-6811-01 6 100838889 100838889 C T SIM1 Missense_Mutation p.R550H 0.14 tolerated_low_confidence(0.32) benign(0.001) TCGA-F5-6811-01 6 119399306 119399306 C T FAM184A Silent p.K53K 0.43 TCGA-F5-6811-01 6 121625765 121625765 T C TBC1D32 Missense_Mutation p.Y259C 0.20 deleterious(0.01) possibly_damaging(0.905) TCGA-F5-6811-01 6 147022088 147022088 G A ADGB Missense_Mutation p.R530H 0.48 deleterious(0.02) benign(0.009) TCGA-F5-6811-01 6 51524434 51524434 G T PKHD1 Missense_Mutation p.A3497D 0.43 deleterious(0) possibly_damaging(0.851) TCGA-F5-6811-01 6 56505333 56505333 T C DST Missense_Mutation p.I163V 0.42 benign(0.001) TCGA-F5-6811-01 6 89827645 89827645 G T SRSF12 5'UTR 0.39 TCGA-F5-6811-01 7 100028938 100028938 C T MEPCE Missense_Mutation p.R433C 0.61 deleterious(0) probably_damaging(0.999) TCGA-F5-6811-01 7 120373037 120373037 C T KCND2 Missense_Mutation p.A399V 0.60 deleterious(0) probably_damaging(0.984) TCGA-F5-6811-01 7 140287514 140287514 C T DENND2A Silent p.A354A 0.15 TCGA-F5-6811-01 7 143771517 143771517 G A OR2A25 Missense_Mutation p.D69N 0.15 deleterious(0.01) probably_damaging(1) TCGA-F5-6811-01 7 21847577 21847577 G A DNAH11 Silent p.T3421T 0.24 TCGA-F5-6811-01 7 2958154 2958154 C T CARD11 Missense_Mutation p.G860S 0.61 tolerated(1) benign(0) TCGA-F5-6811-01 7 43909073 43909073 C G MRPS24 Missense_Mutation p.G8R 0.70 tolerated_low_confidence(0.58) benign(0.001) TCGA-F5-6811-01 7 44184850 44184850 C T GCK Missense_Mutation p.R429H 0.17 deleterious(0.02) benign(0.012) TCGA-F5-6811-01 7 63721253 63721253 C T ZNF679 Nonsense_Mutation p.Q70* 0.15 TCGA-F5-6811-01 7 7646629 7646629 A T MIOS Missense_Mutation p.D845V 0.45 deleterious(0.01) benign(0.062) TCGA-F5-6811-01 8 61777577 61777577 T C CHD7 Silent p.G2693G 0.12 TCGA-F5-6811-01 9 13205997 13205997 C A MPDZ Missense_Mutation p.M464I 0.21 tolerated(0.36) benign(0.003) TCGA-F5-6811-01 X 115592904 115592904 G A CT83 3'UTR 0.62 TCGA-F5-6811-01 X 123514421 123514421 G A TENM1 Missense_Mutation p.H2722Y 0.67 deleterious(0.01) benign(0.402) TCGA-F5-6811-01 X 123787615 123787615 G A TENM1 Missense_Mutation p.A396V 0.35 tolerated_low_confidence(0.46) benign(0.004) TCGA-F5-6811-01 X 128782661 128782661 C T APLN Missense_Mutation p.R59Q 0.33 tolerated(0.17) probably_damaging(0.979) TCGA-F5-6811-01 X 130420422 130420422 A G IGSF1 Missense_Mutation p.M29T 0.10 tolerated(0.77) benign(0.03) TCGA-F5-6811-01 X 145109320 145109320 C A MIR891A RNA 0.56 TCGA-F5-6811-01 X 19032031 19032031 T G GPR64 Missense_Mutation p.N291T 0.29 tolerated_low_confidence(0.43) benign(0.002) TCGA-F5-6811-01 X 3241640 3241640 C T MXRA5 Missense_Mutation p.V696M 0.65 deleterious(0.01) possibly_damaging(0.776) TCGA-F5-6811-01 X 32486770 32486770 C T DMD Missense_Mutation p.V1003M 0.24 probably_damaging(0.994) TCGA-F5-6812-01 10 104139152 104139152 C T GBF1 Missense_Mutation p.R1535C 0.37 tolerated(0.05) possibly_damaging(0.513) TCGA-F5-6812-01 10 22016857 22016857 G T MLLT10 Missense_Mutation p.R688L 0.39 tolerated(0.07) possibly_damaging(0.83) TCGA-F5-6812-01 10 65357872 65357872 T - REEP3 Frame_Shift_Del p.F91Sfs*29 0.14 TCGA-F5-6812-01 10 7844757 7844757 G A ATP5C1 Missense_Mutation p.R277H 0.16 deleterious(0.03) benign(0.036) TCGA-F5-6812-01 11 121986249 121986249 A T BLID 3'UTR 0.15 TCGA-F5-6812-01 11 63279284 63279284 C T LGALS12 Missense_Mutation p.R230W 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6812-01 11 6867549 6867549 C T OR10A5 Silent p.C212C 0.20 TCGA-F5-6812-01 11 691526 691526 G A DEAF1 Missense_Mutation p.A121V 0.31 tolerated(0.08) possibly_damaging(0.689) TCGA-F5-6812-01 11 92495184 92495184 G T FAT3 Missense_Mutation p.A1278S 0.09 probably_damaging(0.911) TCGA-F5-6812-01 11 92495185 92495185 C T FAT3 Missense_Mutation p.A1278V 0.08 benign(0.08) TCGA-F5-6812-01 12 23999034 23999034 C T SOX5 Missense_Mutation p.E122K 0.19 deleterious(0.02) benign(0.164) TCGA-F5-6812-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.24 deleterious(0.02) possibly_damaging(0.773) TCGA-F5-6812-01 12 48141384 48141384 T C RAPGEF3 Missense_Mutation p.D500G 0.11 deleterious(0) probably_damaging(0.946) TCGA-F5-6812-01 12 51117078 51117078 C T DIP2B Missense_Mutation p.T1087M 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6812-01 12 52797598 52797598 G A KRT82 Silent p.F169F 0.29 TCGA-F5-6812-01 12 7261774 7261774 C T C1RL Translation_Start_Site p.M1? 0.13 tolerated_low_confidence(0.13) benign(0.006) TCGA-F5-6812-01 12 82796894 82796894 G C METTL25 Missense_Mutation p.E422Q 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6812-01 13 76111975 76111975 G A COMMD6 5'UTR 0.32 TCGA-F5-6812-01 14 33290854 33290854 G T AKAP6 Missense_Mutation p.A1279S 0.42 tolerated(0.79) possibly_damaging(0.5) TCGA-F5-6812-01 15 56207629 56207629 G A NEDD4 Silent p.S467S 0.37 TCGA-F5-6812-01 16 27480698 27480698 T A GTF3C1 Missense_Mutation p.N1663I 0.59 deleterious(0.01) possibly_damaging(0.779) TCGA-F5-6812-01 16 88555509 88555509 A G ZFPM1 Silent p.E72E 0.13 TCGA-F5-6812-01 16 88786849 88786849 A G PIEZO1 Missense_Mutation p.F1965L 0.08 deleterious(0) probably_damaging(0.998) TCGA-F5-6812-01 17 18834068 18834068 G A PRPSAP2 3'UTR 0.32 TCGA-F5-6812-01 17 21320073 21320073 C T KCNJ12 3'UTR 0.06 TCGA-F5-6812-01 17 2279975 2279975 G A SGSM2 Intron 0.27 TCGA-F5-6812-01 17 36619177 36619177 G A ARHGAP23 Missense_Mutation p.R115H 0.21 tolerated(0.17) benign(0.04) TCGA-F5-6812-01 17 7577106 7577106 G T TP53 Missense_Mutation p.P278T 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6812-01 17 7577123 7577123 A C TP53 Missense_Mutation p.V272G 0.24 deleterious(0) probably_damaging(1) TCGA-F5-6812-01 17 76486905 76486905 G A DNAH17 Missense_Mutation p.R2218W 0.32 probably_damaging(1) TCGA-F5-6812-01 18 55338741 55338741 G A ATP8B1 Nonsense_Mutation p.R631* 0.26 TCGA-F5-6812-01 18 65178462 65178462 T C DSEL Silent p.E1138E 0.26 TCGA-F5-6812-01 19 18053642 18053642 G A CCDC124 Missense_Mutation p.A113T 0.18 tolerated(0.55) benign(0.003) TCGA-F5-6812-01 19 36729189 36729189 A G ZNF146 3'UTR 0.28 TCGA-F5-6812-01 19 38976314 38976314 C T RYR1 Silent p.C1673C 0.23 TCGA-F5-6812-01 19 4171675 4171675 C T CREB3L3 Silent p.N365N 0.29 TCGA-F5-6812-01 19 43441212 43441212 G A PSG7 Missense_Mutation p.A6V 0.33 tolerated(0.09) possibly_damaging(0.674) TCGA-F5-6812-01 1 11579845 11579845 C T PTCHD2 Missense_Mutation p.T703M 0.18 tolerated(0.1) benign(0.339) TCGA-F5-6812-01 1 12835687 12835687 C T PRAMEF12 Missense_Mutation p.R97W 0.26 deleterious(0) benign(0.001) TCGA-F5-6812-01 1 1653140 1653140 C A CDK11A Missense_Mutation p.R41L 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.882) TCGA-F5-6812-01 1 17318787 17318787 G A ATP13A2 Silent p.Y652Y 0.30 TCGA-F5-6812-01 1 182025552 182025552 A G ZNF648 Missense_Mutation p.Y532H 0.26 deleterious(0) probably_damaging(0.995) TCGA-F5-6812-01 1 198668819 198668819 G A PTPRC Missense_Mutation p.S142N 0.34 tolerated(0.48) benign(0.093) TCGA-F5-6812-01 1 24021271 24021271 A T RPL11 Missense_Mutation p.D129V 0.27 deleterious(0) probably_damaging(0.998) TCGA-F5-6812-01 1 240656552 240656552 G A GREM2 Missense_Mutation p.T75M 0.23 deleterious(0) probably_damaging(0.996) TCGA-F5-6812-01 1 241753350 241753350 C G KMO Missense_Mutation p.Q379E 0.27 deleterious(0) benign(0.007) TCGA-F5-6812-01 1 241834420 241834420 G A WDR64 Silent p.Q107Q 0.20 TCGA-F5-6812-01 1 247264412 247264412 T C ZNF669 Missense_Mutation p.K220R 0.17 deleterious(0.04) probably_damaging(0.978) TCGA-F5-6812-01 1 45475351 45475351 T G HECTD3 Missense_Mutation p.E255A 0.41 deleterious(0.04) benign(0.113) TCGA-F5-6812-01 1 68906614 68906614 C T RPE65 Missense_Mutation p.V189I 0.42 tolerated(0.18) possibly_damaging(0.705) TCGA-F5-6812-01 20 50418828 50418828 C T SALL4 Silent p.A40A 0.24 TCGA-F5-6812-01 20 50701144 50701144 G A ZFP64 Silent p.V630V 0.20 TCGA-F5-6812-01 20 55071912 55071912 G A GCNT7 Silent p.F129F 0.05 TCGA-F5-6812-01 20 60888019 60888019 C A LAMA5 Missense_Mutation p.L3001F 0.13 benign(0.016) TCGA-F5-6812-01 20 60967489 60967489 C A CABLES2 Missense_Mutation p.R349S 0.12 deleterious(0) possibly_damaging(0.867) TCGA-F5-6812-01 21 15599508 15599508 G A RBM11 Missense_Mutation p.R247Q 0.25 tolerated(0.06) benign(0.01) TCGA-F5-6812-01 22 19164388 19164388 A G SLC25A1 Missense_Mutation p.V201A 0.09 deleterious(0.04) benign(0.348) TCGA-F5-6812-01 22 27008120 27008120 C T CRYBB1 Missense_Mutation p.R72H 0.64 tolerated(0.2) benign(0.063) TCGA-F5-6812-01 22 38565469 38565469 C T PLA2G6 5'UTR 0.64 TCGA-F5-6812-01 2 102805702 102805702 G T IL1RL2 Missense_Mutation p.Q75H 0.34 deleterious(0) possibly_damaging(0.908) TCGA-F5-6812-01 2 128482644 128482644 C T WDR33 Missense_Mutation p.E333K 0.25 deleterious(0) unknown(0) TCGA-F5-6812-01 2 168100204 168100204 A C XIRP2 Silent p.R768R 0.16 TCGA-F5-6812-01 2 168105245 168105245 C A XIRP2 Missense_Mutation p.T2448N 0.30 benign(0) TCGA-F5-6812-01 2 179296906 179296906 G A PRKRA Missense_Mutation p.S287F 0.26 tolerated(0.16) benign(0.022) TCGA-F5-6812-01 2 216298121 216298121 C T FN1 Missense_Mutation p.R114H 0.32 deleterious(0) probably_damaging(0.999) TCGA-F5-6812-01 2 218713452 218713452 C T TNS1 Silent p.S471S 0.31 TCGA-F5-6812-01 2 224462614 224462614 G C SCG2 Missense_Mutation p.L463V 0.35 tolerated(0.2) benign(0.403) TCGA-F5-6812-01 2 228881184 228881184 G T SPHKAP Missense_Mutation p.D1462E 0.27 tolerated(1) benign(0) TCGA-F5-6812-01 2 235950065 235950065 G T SH3BP4 Missense_Mutation p.D218Y 0.34 deleterious(0) benign(0.291) TCGA-F5-6812-01 2 50850690 50850690 T A NRXN1 Missense_Mutation p.N332I 0.27 deleterious(0.01) possibly_damaging(0.767) TCGA-F5-6812-01 3 120408731 120408731 G A RABL3 Missense_Mutation p.P217L 0.11 tolerated(0.61) benign(0.009) TCGA-F5-6812-01 3 129304808 129304808 C T PLXND1 Missense_Mutation p.R613H 0.32 tolerated(0.22) benign(0.001) TCGA-F5-6812-01 3 130110085 130110086 AA C COL6A5 Frame_Shift_Del p.K827Tfs*7 0.20 TCGA-F5-6812-01 3 95374208 95374208 A G MTHFD2P1 RNA 0.31 TCGA-F5-6812-01 4 101401184 101401184 G A EMCN Missense_Mutation p.A26V 0.31 tolerated(0.3) benign(0.007) TCGA-F5-6812-01 4 15993986 15993986 T C PROM1 Missense_Mutation p.E599G 0.24 deleterious(0.04) probably_damaging(0.943) TCGA-F5-6812-01 4 39839791 39839791 C T PDS5A Missense_Mutation p.S1232N 0.36 tolerated_low_confidence(0.07) benign(0.096) TCGA-F5-6812-01 4 4303787 4303787 T C ZBTB49 Missense_Mutation p.I75T 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6812-01 4 85560117 85560117 T G CDS1 Missense_Mutation p.F284C 0.46 tolerated(0.09) benign(0.114) TCGA-F5-6812-01 4 87622619 87622619 T A PTPN13 Missense_Mutation p.I287N 0.29 tolerated(0.36) benign(0.001) TCGA-F5-6812-01 5 112175303 112175303 C T APC Nonsense_Mutation p.Q1338* 0.51 TCGA-F5-6812-01 5 179226572 179226572 G T MGAT4B Missense_Mutation p.D340E 0.27 tolerated(0.22) benign(0.208) TCGA-F5-6812-01 5 5464067 5464067 A G KIAA0947 Silent p.T1540T 0.23 TCGA-F5-6812-01 5 58334721 58334721 T C PDE4D Missense_Mutation p.T296A 0.15 deleterious_low_confidence(0.02) benign(0.2) TCGA-F5-6812-01 6 112041168 112041168 G T FYN Silent p.R29R 0.19 TCGA-F5-6812-01 6 170592670 170592670 A G DLL1 Missense_Mutation p.V566A 0.22 deleterious(0.04) benign(0.142) TCGA-F5-6812-01 6 38840416 38840416 C T DNAH8 Silent p.C2148C 0.26 TCGA-F5-6812-01 6 88776120 88776120 A T SPACA1 3'UTR 0.24 TCGA-F5-6812-01 7 103185792 103185792 C T RELN Splice_Site p.X2101_splice 0.14 TCGA-F5-6812-01 7 105182974 105182974 T G RINT1 Missense_Mutation p.I131M 0.19 deleterious(0.01) possibly_damaging(0.635) TCGA-F5-6812-01 7 130021652 130021652 G A CPA1 Missense_Mutation p.R110Q 0.28 tolerated(0.57) benign(0.001) TCGA-F5-6812-01 7 135612665 135612665 A C AC015987.2 3'UTR 0.22 TCGA-F5-6812-01 7 139299215 139299215 T C HIPK2 Missense_Mutation p.I603V 0.20 tolerated(0.19) benign(0) TCGA-F5-6812-01 7 142649646 142649646 G A KEL Missense_Mutation p.R385C 0.25 deleterious(0) probably_damaging(0.954) TCGA-F5-6812-01 7 146536869 146536869 G A CNTNAP2 Missense_Mutation p.R92Q 0.16 tolerated(0.06) probably_damaging(0.998) TCGA-F5-6812-01 7 23802527 23802527 C G STK31 Silent p.R467R 0.12 TCGA-F5-6812-01 7 31736696 31736696 A G PPP1R17 Missense_Mutation p.D118G 0.14 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-F5-6812-01 7 88963642 88963642 A G ZNF804B Missense_Mutation p.K449R 0.24 deleterious(0.03) benign(0.263) TCGA-F5-6812-01 7 90585055 90585055 C T CDK14 Silent p.N272N 0.21 TCGA-F5-6812-01 8 144898916 144898916 T C PUF60 Missense_Mutation p.E485G 0.09 deleterious(0.02) benign(0.004) TCGA-F5-6812-01 8 27634264 27634264 A G ESCO2 Missense_Mutation p.K147E 0.17 deleterious(0.01) possibly_damaging(0.606) TCGA-F5-6812-01 8 28633356 28633356 G A INTS9 Missense_Mutation p.P495S 0.11 tolerated(0.23) benign(0.343) TCGA-F5-6812-01 8 29921332 29921332 C T TMEM66 3'UTR 0.20 TCGA-F5-6812-01 8 92301370 92301370 C A SLC26A7 Missense_Mutation p.A67D 0.22 deleterious(0) possibly_damaging(0.732) TCGA-F5-6812-01 9 113563218 113563218 C T MUSK Nonsense_Mutation p.R854* 0.62 TCGA-F5-6812-01 9 123667348 123667348 C T TRAF1 Missense_Mutation p.V401M 0.54 deleterious(0.01) probably_damaging(0.93) TCGA-F5-6812-01 9 26906045 26906045 G A PLAA Missense_Mutation p.R618W 0.47 deleterious(0) probably_damaging(1) TCGA-F5-6812-01 9 33927851 33927851 C T UBAP2 Missense_Mutation p.G772E 0.18 tolerated(0.36) unknown(0) TCGA-F5-6812-01 9 5022143 5022143 A T JAK2 Silent p.A52A 0.12 TCGA-F5-6812-01 X 100911496 100911496 C T ARMCX2 Missense_Mutation p.R360H 0.61 tolerated(0.57) benign(0.003) TCGA-F5-6812-01 X 122616762 122616762 G A GRIA3 Missense_Mutation p.R851Q 0.59 deleterious(0.01) possibly_damaging(0.796) TCGA-F5-6812-01 X 127185564 127185564 T A ACTRT1 Missense_Mutation p.N208Y 0.61 deleterious(0.03) benign(0) TCGA-F5-6812-01 X 12904056 12904056 G A TLR7 Silent p.P143P 0.75 TCGA-F5-6812-01 X 129203559 129203559 T C ELF4 Silent p.E301E 0.09 TCGA-F5-6812-01 X 144904649 144904655 GTTTTTG - SLITRK2 Frame_Shift_Del p.V236Wfs*17 0.48 TCGA-F5-6812-01 X 34148327 34148327 C T FAM47A Missense_Mutation p.R690H 0.45 tolerated(0.58) benign(0.272) TCGA-F5-6812-01 X 47315383 47315383 T G ZNF41 Missense_Mutation p.K78Q 0.51 tolerated(0.15) benign(0.012) TCGA-F5-6812-01 X 64743961 64743961 T C LAS1L Silent p.E425E 0.08 TCGA-F5-6813-01 10 105944783 105944783 A T WDR96 Missense_Mutation p.L711Q 0.34 deleterious(0) probably_damaging(0.993) TCGA-F5-6813-01 10 125780811 125780811 G A CHST15 Silent p.R436R 0.32 TCGA-F5-6813-01 10 26385365 26385365 A C MYO3A Missense_Mutation p.K540Q 0.10 deleterious(0.01) benign(0.309) TCGA-F5-6813-01 10 64573435 64573435 C T EGR2 Silent p.L321L 0.42 TCGA-F5-6813-01 10 68687507 68687507 C T LRRTM3 Missense_Mutation p.P278L 0.34 deleterious(0) probably_damaging(0.998) TCGA-F5-6813-01 10 75488280 75488280 C T RP11-464F9.1 RNA 0.29 TCGA-F5-6813-01 10 89268218 89268218 G A MINPP1 Missense_Mutation p.G255R 0.07 tolerated(0.07) possibly_damaging(0.582) TCGA-F5-6813-01 11 10789928 10789928 C T CTR9 Missense_Mutation p.R667C 0.42 deleterious(0) probably_damaging(0.985) TCGA-F5-6813-01 11 108236072 108236072 A G ATM Missense_Mutation p.N3003S 0.34 deleterious(0.01) possibly_damaging(0.831) TCGA-F5-6813-01 11 110035171 110035171 C T ZC3H12C Missense_Mutation p.T454M 0.22 deleterious(0) possibly_damaging(0.891) TCGA-F5-6813-01 11 123624877 123624877 G A OR6X1 Missense_Mutation p.S117F 0.10 deleterious(0) probably_damaging(0.921) TCGA-F5-6813-01 11 125888238 125888238 C A CDON Missense_Mutation p.K209N 0.35 deleterious(0.01) probably_damaging(1) TCGA-F5-6813-01 11 1263851 1263851 C T MUC5B Missense_Mutation p.A1914V 0.11 unknown(0) TCGA-F5-6813-01 11 22359982 22359982 G A SLC17A6 5'UTR 0.72 TCGA-F5-6813-01 11 33108583 33108583 A T CSTF3 Silent p.P582P 0.20 TCGA-F5-6813-01 11 40136960 40136960 G A LRRC4C Missense_Mutation p.R295W 0.44 deleterious(0) probably_damaging(0.98) TCGA-F5-6813-01 11 5530440 5530440 G C UBQLN3 Missense_Mutation p.L117V 0.27 tolerated(0.41) benign(0.142) TCGA-F5-6813-01 11 59556401 59556401 C A STX3 Missense_Mutation p.N90K 0.28 tolerated(1) benign(0.037) TCGA-F5-6813-01 11 62678246 62678246 G A CHRM1 Silent p.S109S 0.36 TCGA-F5-6813-01 12 10010127 10010127 G T CLEC2B Nonsense_Mutation p.Y61* 0.33 TCGA-F5-6813-01 12 122257345 122257345 G A SETD1B Missense_Mutation p.A1109T 0.16 unknown(0) TCGA-F5-6813-01 12 124821682 124821682 G A NCOR2 Missense_Mutation p.P1911L 0.33 possibly_damaging(0.525) TCGA-F5-6813-01 12 21174445 21174445 C A SLCO1B7 Nonsense_Mutation p.S90* 0.07 TCGA-F5-6813-01 12 21681996 21681996 G A C12orf39 Silent p.A90A 0.33 TCGA-F5-6813-01 12 43777717 43777717 C A ADAMTS20 Missense_Mutation p.G1506C 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6813-01 12 52681070 52681070 G T KRT81 Missense_Mutation p.Q355K 0.35 deleterious(0.01) possibly_damaging(0.72) TCGA-F5-6813-01 12 53091627 53091627 C T KRT77 Silent p.L199L 0.28 TCGA-F5-6813-01 12 6128300 6128300 G A VWF Silent p.I1428I 0.41 TCGA-F5-6813-01 13 103492043 103492043 G C BIVM-ERCC5 Missense_Mutation p.G419A 0.27 tolerated_low_confidence(0.13) probably_damaging(0.959) TCGA-F5-6813-01 13 30104812 30104812 G A SLC7A1 Silent p.V189V 0.12 TCGA-F5-6813-01 14 36777342 36777342 T C MBIP Missense_Mutation p.I282V 0.35 tolerated(0.05) possibly_damaging(0.665) TCGA-F5-6813-01 14 47600963 47600963 A G MDGA2 Silent p.C293C 0.30 TCGA-F5-6813-01 14 52186866 52186866 C T FRMD6 Missense_Mutation p.A373V 0.40 tolerated(0.15) benign(0.006) TCGA-F5-6813-01 14 73141020 73141020 C A DPF3 Missense_Mutation p.G267W 0.07 deleterious(0) probably_damaging(0.94) TCGA-F5-6813-01 14 77242602 77242602 G A VASH1 Missense_Mutation p.D300N 0.44 deleterious(0.01) possibly_damaging(0.736) TCGA-F5-6813-01 14 78285426 78285426 C T ADCK1 Silent p.G35G 0.38 TCGA-F5-6813-01 15 102191956 102191956 G C TM2D3 Missense_Mutation p.Q38E 0.15 tolerated(0.81) benign(0.055) TCGA-F5-6813-01 15 30010973 30010973 C G TJP1 Missense_Mutation p.E1125Q 0.16 deleterious_low_confidence(0.05) benign(0.421) TCGA-F5-6813-01 15 34819830 34819832 TGT - GOLGA8B 3'UTR 0.35 TCGA-F5-6813-01 15 42140700 42140700 G A SPTBN5 3'UTR 0.46 TCGA-F5-6813-01 15 45047513 45047513 G A TRIM69 Missense_Mutation p.R141Q 0.56 tolerated(0.4) benign(0.079) TCGA-F5-6813-01 15 67495195 67495196 AT - AAGAB Frame_Shift_Del p.D304Gfs*3 0.45 TCGA-F5-6813-01 15 82443978 82443978 C T EFTUD1 Silent p.E939E 0.34 TCGA-F5-6813-01 16 28989308 28989308 C T SPNS1 Silent p.C129C 0.31 TCGA-F5-6813-01 16 30583496 30583496 A G ZNF688 5'UTR 0.08 TCGA-F5-6813-01 16 3293377 3293377 C T MEFV Missense_Mutation p.V704I 0.40 tolerated(1) benign(0.002) TCGA-F5-6813-01 16 541263 541263 G C RAB11FIP3 Intron 0.16 TCGA-F5-6813-01 16 55519570 55519570 T A MMP2 Nonsense_Mutation p.L238* 0.31 TCGA-F5-6813-01 16 55729245 55729245 G A SLC6A2 Missense_Mutation p.A360T 0.23 deleterious(0.04) benign(0.21) TCGA-F5-6813-01 16 58048187 58048188 - CTGC USB1 Frame_Shift_Ins p.N156Cfs*20 0.26 TCGA-F5-6813-01 16 61854860 61854860 C T CDH8 Silent p.Q331Q 0.26 TCGA-F5-6813-01 16 67327952 67327952 G T KCTD19 Silent p.I571I 0.19 TCGA-F5-6813-01 16 74908248 74908248 G A WDR59 Silent p.H928H 0.27 TCGA-F5-6813-01 17 17131449 17131449 C T FLCN Translation_Start_Site p.M1? 0.61 deleterious(0) probably_damaging(0.978) TCGA-F5-6813-01 17 27047048 27047048 G T RPL23A Missense_Mutation p.A9S 0.07 tolerated(0.1) unknown(0) TCGA-F5-6813-01 17 29560133 29560133 C T NF1 Missense_Mutation p.R1204W 0.26 deleterious(0) probably_damaging(0.988) TCGA-F5-6813-01 17 3935538 3935538 T C ZZEF1 Silent p.G2258G 0.15 TCGA-F5-6813-01 17 40823492 40823493 CT - PLEKHH3 Frame_Shift_Del p.E387Afs*86 0.29 TCGA-F5-6813-01 17 59761141 59761141 G C BRIP1 Missense_Mutation p.S1089C 0.13 deleterious_low_confidence(0.04) benign(0.009) TCGA-F5-6813-01 17 61574287 61574287 A C ACE Missense_Mutation p.E1211A 0.16 deleterious(0) probably_damaging(0.91) TCGA-F5-6813-01 17 64881325 64881325 G A CACNG5 Missense_Mutation p.D266N 0.31 deleterious_low_confidence(0) benign(0.073) TCGA-F5-6813-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.40 tolerated(0.11) benign(0.308) TCGA-F5-6813-01 17 76870007 76870007 A G TIMP2 Intron 0.09 TCGA-F5-6813-01 18 22807394 22807394 C T ZNF521 Missense_Mutation p.R163H 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6813-01 18 47311574 47311574 C T ACAA2 Missense_Mutation p.E368K 0.12 deleterious(0.02) benign(0.229) TCGA-F5-6813-01 18 51025778 51025778 C T DCC Nonsense_Mutation p.R1337* 0.48 TCGA-F5-6813-01 18 51851242 51851242 G T STARD6 Missense_Mutation p.N161K 0.07 deleterious(0.05) probably_damaging(0.999) TCGA-F5-6813-01 18 57103325 57103325 G A CCBE1 Missense_Mutation p.R346C 0.48 deleterious(0) probably_damaging(0.998) TCGA-F5-6813-01 18 59483359 59483359 A G RNF152 Missense_Mutation p.L113P 0.10 tolerated(0.21) probably_damaging(0.995) TCGA-F5-6813-01 19 13928045 13928045 G A ZSWIM4 Missense_Mutation p.G399D 0.44 deleterious(0.02) unknown(0) TCGA-F5-6813-01 19 17717111 17717111 T C UNC13A Missense_Mutation p.K1622E 0.16 deleterious(0) possibly_damaging(0.642) TCGA-F5-6813-01 19 17992829 17992829 T C SLC5A5 Silent p.P373P 0.22 TCGA-F5-6813-01 19 35758362 35758362 C T LSR Missense_Mutation p.R547W 0.50 tolerated(0.1) benign(0.007) TCGA-F5-6813-01 19 51767239 51767239 C A SIGLECL1 5'UTR 0.29 TCGA-F5-6813-01 19 52249899 52249899 C T FPR1 Missense_Mutation p.A117T 0.31 tolerated(0.54) benign(0.082) TCGA-F5-6813-01 19 54081132 54081132 G A ZNF331 Missense_Mutation p.E440K 0.17 tolerated(0.29) benign(0.003) TCGA-F5-6813-01 19 56543975 56543975 A G NLRP5 Splice_Site p.X759_splice 0.10 TCGA-F5-6813-01 19 57175458 57175458 C T ZNF835 Missense_Mutation p.R370H 0.11 deleterious(0.02) benign(0.339) TCGA-F5-6813-01 19 6690729 6690729 G A C3 Missense_Mutation p.R1134W 0.26 deleterious(0) benign(0.221) TCGA-F5-6813-01 19 8665923 8665923 T C ADAMTS10 Silent p.R233R 0.24 TCGA-F5-6813-01 19 9077313 9077313 G T MUC16 Missense_Mutation p.S3378Y 0.26 unknown(0) TCGA-F5-6813-01 1 109525375 109525375 C G WDR47 Missense_Mutation p.D716H 0.40 deleterious(0.02) benign(0.06) TCGA-F5-6813-01 1 112042493 112042493 G A ADORA3 Intron 0.57 TCGA-F5-6813-01 1 158623119 158623119 G A SPTA1 Missense_Mutation p.R1045W 0.26 deleterious(0.02) benign(0.035) TCGA-F5-6813-01 1 174241581 174241581 G A RABGAP1L Missense_Mutation p.R339Q 0.05 tolerated(0.12) possibly_damaging(0.668) TCGA-F5-6813-01 1 177225159 177225159 T A BRINP2 Missense_Mutation p.L125H 0.07 deleterious(0) probably_damaging(1) TCGA-F5-6813-01 1 183532626 183532626 T A NCF2 Missense_Mutation p.Q374L 0.13 tolerated(0.11) benign(0.155) TCGA-F5-6813-01 1 185171787 185171787 G T SWT1 Missense_Mutation p.D509Y 0.20 deleterious(0) possibly_damaging(0.489) TCGA-F5-6813-01 1 186294955 186294956 - TT TPR Frame_Shift_Ins p.T2018Kfs*69 0.10 TCGA-F5-6813-01 1 197237456 197237456 G A CRB1 5'UTR 0.28 TCGA-F5-6813-01 1 201017737 201017737 G A CACNA1S Missense_Mutation p.R1472C 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6813-01 1 213125037 213125037 C A VASH2 Silent p.V51V 0.17 TCGA-F5-6813-01 1 227842536 227842536 A G ZNF678 Silent p.Q195Q 0.21 TCGA-F5-6813-01 1 228525710 228525710 G A OBSCN Silent p.T6579T 0.33 TCGA-F5-6813-01 1 228645350 228645350 C G HIST3H2A Missense_Mutation p.E57Q 0.08 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-F5-6813-01 1 247024509 247024509 C T AHCTF1 Missense_Mutation p.R1284K 0.08 tolerated(1) benign(0.001) TCGA-F5-6813-01 1 248031152 248031152 G C TRIM58 Silent p.V251V 0.09 TCGA-F5-6813-01 1 43636446 43636446 G T EBNA1BP2 Missense_Mutation p.S198Y 0.53 deleterious(0) probably_damaging(0.978) TCGA-F5-6813-01 1 47183671 47183671 C T EFCAB14 Missense_Mutation p.R30H 0.45 deleterious(0.04) benign(0.233) TCGA-F5-6813-01 20 13830868 13830868 G A SEL1L2 Missense_Mutation p.T526M 0.34 tolerated_low_confidence(0.58) benign(0.001) TCGA-F5-6813-01 20 58519472 58519472 G A FAM217B Missense_Mutation p.M158I 0.15 deleterious(0.02) possibly_damaging(0.676) TCGA-F5-6813-01 21 40969543 40969543 T A C21orf88 3'UTR 0.42 TCGA-F5-6813-01 21 43864682 43864682 G C UBASH3A Missense_Mutation p.D593H 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6813-01 21 45855046 45855046 G A TRPM2 Missense_Mutation p.R1336H 0.25 deleterious(0) possibly_damaging(0.832) TCGA-F5-6813-01 21 46354983 46354983 C T C21orf67 Missense_Mutation p.R120H 0.30 tolerated_low_confidence(0.2) possibly_damaging(0.715) TCGA-F5-6813-01 2 109368375 109368375 C T RANBP2 Silent p.N560N 0.30 TCGA-F5-6813-01 2 109988100 109988100 G C SH3RF3 Missense_Mutation p.G303A 0.12 tolerated(0.29) possibly_damaging(0.71) TCGA-F5-6813-01 2 155711879 155711879 T C KCNJ3 3'UTR 0.33 TCGA-F5-6813-01 2 178494122 178494122 C G PDE11A 3'UTR 0.34 TCGA-F5-6813-01 2 179490099 179490099 C G TTN Missense_Mutation p.V14817L 0.09 TCGA-F5-6813-01 2 190532026 190532026 G T ASNSD1 Missense_Mutation p.A390S 0.32 tolerated(0.77) benign(0.044) TCGA-F5-6813-01 2 207988559 207988559 G A KLF7 Silent p.N224N 0.33 TCGA-F5-6813-01 2 209103949 209103949 A T IDH1 Missense_Mutation p.F334I 0.10 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-F5-6813-01 2 210636819 210636819 A G UNC80 Missense_Mutation p.E8G 0.27 possibly_damaging(0.451) TCGA-F5-6813-01 2 218924482 218924482 T C CXCR2P1 RNA 0.10 TCGA-F5-6813-01 2 220161201 220161201 G A PTPRN Missense_Mutation p.T783M 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6813-01 2 223423167 223423167 C T SGPP2 Silent p.P250P 0.11 TCGA-F5-6813-01 2 61147183 61147183 C T REL Silent p.Y287Y 0.10 TCGA-F5-6813-01 2 74653570 74653570 G A RTKN Missense_Mutation p.P498S 0.42 tolerated(0.22) benign(0.003) TCGA-F5-6813-01 2 9463303 9463303 G T ASAP2 Missense_Mutation p.R175L 0.08 deleterious(0) probably_damaging(0.999) TCGA-F5-6813-01 2 9633048 9633048 G A ADAM17 Silent p.F687F 0.12 TCGA-F5-6813-01 3 107508718 107508718 A G BBX Missense_Mutation p.E763G 0.06 deleterious(0.01) probably_damaging(0.95) TCGA-F5-6813-01 3 135822189 135822189 G T PPP2R3A Nonsense_Mutation p.E1065* 0.08 TCGA-F5-6813-01 3 170885009 170885009 C A TNIK Missense_Mutation p.S275I 0.31 tolerated(0.42) unknown(0) TCGA-F5-6813-01 3 197553751 197553751 C T LRCH3 Silent p.L215L 0.15 TCGA-F5-6813-01 3 52828867 52828867 C T ITIH3 Silent p.S16S 0.13 TCGA-F5-6813-01 3 78667156 78667156 G A ROBO1 Missense_Mutation p.P1304L 0.36 deleterious(0) probably_damaging(0.992) TCGA-F5-6813-01 3 9034656 9034656 G A SRGAP3 Missense_Mutation p.S831F 0.16 deleterious(0.01) benign(0.002) TCGA-F5-6813-01 4 113462250 113462250 G A C4orf21 Nonsense_Mutation p.Q1925* 0.55 TCGA-F5-6813-01 4 26483598 26483598 C T CCKAR Missense_Mutation p.V317I 0.43 deleterious(0.04) possibly_damaging(0.881) TCGA-F5-6813-01 4 70156530 70156530 G A UGT2B28 Splice_Site p.X437_splice 0.49 TCGA-F5-6813-01 4 79400650 79400650 C T FRAS1 Missense_Mutation p.R2741C 0.52 probably_damaging(0.929) TCGA-F5-6813-01 4 85418774 85418774 A C NKX6-1 Missense_Mutation p.I203S 0.39 tolerated(0.17) unknown(0) TCGA-F5-6813-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.74 TCGA-F5-6813-01 5 114607273 114607273 G T CCDC112 Missense_Mutation p.F323L 0.06 tolerated(1) benign(0.004) TCGA-F5-6813-01 5 135489805 135489805 A G SMAD5 Missense_Mutation p.K119R 0.30 deleterious(0.04) possibly_damaging(0.71) TCGA-F5-6813-01 5 140203498 140203498 C T PCDHA5 Missense_Mutation p.T713M 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.662) TCGA-F5-6813-01 5 147261095 147261095 C A SCGB3A2 Missense_Mutation p.P48T 0.28 deleterious(0.01) probably_damaging(0.979) TCGA-F5-6813-01 5 3599389 3599389 C T IRX1 Silent p.F109F 0.09 TCGA-F5-6813-01 5 74011386 74011386 C G HEXB Missense_Mutation p.S318C 0.06 deleterious(0.01) benign(0.392) TCGA-F5-6813-01 6 10529138 10529139 GT - GCNT2 5'UTR 0.28 TCGA-F5-6813-01 6 111884188 111884188 G C TRAF3IP2 Missense_Mutation p.L511V 0.45 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6813-01 6 149262525 149262525 C T UST Silent p.V134V 0.37 TCGA-F5-6813-01 6 163987757 163987757 G A QKI Silent p.A313A 0.53 TCGA-F5-6813-01 6 18149270 18149270 T C TPMT Missense_Mutation p.Q30R 0.31 tolerated(0.41) benign(0.007) TCGA-F5-6813-01 6 31105792 31105792 G A PSORS1C2 Missense_Mutation p.P116L 0.24 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6813-01 6 31778963 31778963 T C HSPA1L Missense_Mutation p.R263G 0.33 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6813-01 6 33037508 33037508 C A HLA-DPA1 Nonsense_Mutation p.E86* 0.38 TCGA-F5-6813-01 6 42647492 42647492 G C UBR2 Missense_Mutation p.C1547S 0.12 deleterious(0) benign(0.248) TCGA-F5-6813-01 6 64423171 64423171 G A PHF3 Missense_Mutation p.R1896H 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6813-01 6 76566848 76566848 C G MYO6 Missense_Mutation p.R420G 0.17 deleterious(0) unknown(0) TCGA-F5-6813-01 7 121651597 121651597 C T PTPRZ1 Missense_Mutation p.R833C 0.11 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-F5-6813-01 7 127953300 127953300 G A RBM28 Silent p.P691P 0.21 TCGA-F5-6813-01 7 140269505 140269505 G A DENND2A Missense_Mutation p.R494W 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6813-01 7 150217240 150217240 C G GIMAP7 Missense_Mutation p.L60V 0.11 tolerated(0.32) benign(0.252) TCGA-F5-6813-01 7 29928974 29928974 G A WIPF3 Silent p.P434P 0.09 TCGA-F5-6813-01 7 55750403 55750403 C G RNU6-389P 5'Flank 0.19 TCGA-F5-6813-01 7 6369524 6369524 G C FAM220A 3'UTR 0.16 TCGA-F5-6813-01 7 82785126 82785126 A G PCLO Silent p.D277D 0.07 TCGA-F5-6813-01 8 133925509 133925509 C T TG Silent p.C1459C 0.61 TCGA-F5-6813-01 8 18080680 18080680 A G NAT1 3'UTR 0.56 TCGA-F5-6813-01 8 39495141 39495141 C T ADAM18 Missense_Mutation p.A249V 0.11 tolerated(0.09) possibly_damaging(0.549) TCGA-F5-6813-01 8 43027510 43027510 C T HGSNAT Silent p.F267F 0.19 TCGA-F5-6813-01 8 57026021 57026021 C G MOS Missense_Mutation p.S174T 0.27 tolerated(0.17) benign(0.013) TCGA-F5-6813-01 8 86572583 86572583 T A REXO1L1P 3'UTR 0.19 TCGA-F5-6813-01 8 92082610 92082610 G C OTUD6B Missense_Mutation p.V30L 0.11 tolerated_low_confidence(0.06) benign(0.041) TCGA-F5-6813-01 9 136321303 136321303 C T ADAMTS13 Silent p.L1227L 0.26 TCGA-F5-6813-01 9 140135839 140135839 C T TUBB4B Silent p.A9A 0.10 TCGA-F5-6813-01 9 43816726 43816726 G A CNTNAP3B Missense_Mutation p.E278K 0.06 deleterious(0) probably_damaging(0.914) TCGA-F5-6813-01 9 87563463 87563463 C G NTRK2 Silent p.V617V 0.10 TCGA-F5-6813-01 9 88247986 88247986 G A AGTPBP1 Nonsense_Mutation p.R496* 0.24 TCGA-F5-6813-01 X 107402853 107402853 G T COL4A6 Missense_Mutation p.P1552T 0.17 benign(0.005) TCGA-F5-6813-01 X 130408647 130408647 C A IGSF1 Missense_Mutation p.C1231F 0.64 deleterious(0) probably_damaging(0.999) TCGA-F5-6813-01 X 30237394 30237394 T G MAGEB2 Missense_Mutation p.Y233D 0.19 deleterious(0) probably_damaging(0.98) TCGA-F5-6813-01 X 63445158 63445158 G C ASB12 Missense_Mutation p.L125V 0.65 deleterious(0) probably_damaging(0.994) TCGA-F5-6813-01 X 99662056 99662056 C T PCDH19 Missense_Mutation p.D514N 0.62 tolerated(0.31) possibly_damaging(0.679) TCGA-F5-6813-01 Y 16953118 16953118 C T NLGN4Y Silent p.H809H 0.79 TCGA-F5-6814-01 10 100003876 100003876 G T R3HCC1L Silent p.R766R 0.14 TCGA-F5-6814-01 10 100008560 100008560 C A LOXL4 3'UTR 0.29 TCGA-F5-6814-01 10 100995597 100995597 C A HPSE2 5'UTR 0.46 TCGA-F5-6814-01 10 101163586 101163586 C T GOT1 Missense_Mutation p.A230T 0.29 deleterious(0) possibly_damaging(0.74) TCGA-F5-6814-01 10 101166517 101166517 C T GOT1 Silent p.K130K 0.37 TCGA-F5-6814-01 10 101180399 101180399 T C GOT1 Silent p.P94P 0.08 TCGA-F5-6814-01 10 101292917 101292917 C T NKX2-3 Missense_Mutation p.T10I 0.29 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 10 101544476 101544476 C T ABCC2 Missense_Mutation p.L49F 0.39 tolerated(0.48) benign(0.005) TCGA-F5-6814-01 10 101591511 101591511 C A ABCC2 Silent p.I1009I 0.42 TCGA-F5-6814-01 10 101605514 101605514 G A ABCC2 Missense_Mutation p.R1374Q 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 101715515 101715515 T G DNMBP Missense_Mutation p.K572N 0.15 deleterious_low_confidence(0.03) benign(0.012) TCGA-F5-6814-01 10 101728987 101728987 G A DNMBP Silent p.F51F 0.18 TCGA-F5-6814-01 10 101829616 101829616 T G CPN1 Missense_Mutation p.K144T 0.10 tolerated(0.37) benign(0) TCGA-F5-6814-01 10 101953825 101953825 A G CHUK Silent p.S630S 0.35 TCGA-F5-6814-01 10 101964942 101964942 T G CHUK Missense_Mutation p.I416L 0.19 tolerated(0.39) benign(0.002) TCGA-F5-6814-01 10 102016131 102016131 T C CWF19L1 Missense_Mutation p.K131R 0.14 tolerated(0.12) benign(0.003) TCGA-F5-6814-01 10 102040727 102040727 T G BLOC1S2 Missense_Mutation p.N86H 0.35 deleterious(0) probably_damaging(0.962) TCGA-F5-6814-01 10 102040792 102040792 T G BLOC1S2 Missense_Mutation p.K64T 0.17 deleterious(0.01) possibly_damaging(0.609) TCGA-F5-6814-01 10 102089887 102089887 C T PKD2L1 5'UTR 0.36 TCGA-F5-6814-01 10 102222854 102222854 G T WNT8B 5'UTR 0.30 TCGA-F5-6814-01 10 102222945 102222945 C A WNT8B Missense_Mutation p.S7Y 0.30 tolerated(1) benign(0.001) TCGA-F5-6814-01 10 102276750 102276750 G A SEC31B 5'UTR 0.45 TCGA-F5-6814-01 10 102289180 102289180 T G NDUFB8 Missense_Mutation p.M57L 0.24 tolerated(0.64) benign(0.052) TCGA-F5-6814-01 10 102683806 102683806 G A FAM178A Missense_Mutation p.E350K 0.11 tolerated(0.26) possibly_damaging(0.716) TCGA-F5-6814-01 10 102683879 102683879 T G FAM178A Missense_Mutation p.F374C 0.19 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 10 102740959 102740959 C T SEMA4G Nonsense_Mutation p.R560* 0.53 TCGA-F5-6814-01 10 102794552 102794552 G A SFXN3 Missense_Mutation p.R38Q 0.36 deleterious(0.04) possibly_damaging(0.858) TCGA-F5-6814-01 10 102796934 102796934 G T SFXN3 Missense_Mutation p.R236I 0.45 deleterious(0) probably_damaging(0.946) TCGA-F5-6814-01 10 103347037 103347037 C T POLL Silent p.K27K 0.37 TCGA-F5-6814-01 10 103530091 103530091 G A FGF8 Nonsense_Mutation p.R244* 0.31 TCGA-F5-6814-01 10 103531279 103531279 G A FGF8 Nonsense_Mutation p.R129* 0.54 TCGA-F5-6814-01 10 103567570 103567570 G T MGEA5 Missense_Mutation p.S190Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 10 103988918 103988918 T C ELOVL3 Missense_Mutation p.I241T 0.15 tolerated(0.07) benign(0.14) TCGA-F5-6814-01 10 103989066 103989066 C T ELOVL3 3'UTR 0.35 TCGA-F5-6814-01 10 104018774 104018774 A C GBF1 Missense_Mutation p.S27R 0.17 deleterious(0.01) benign(0.183) TCGA-F5-6814-01 10 104173676 104173676 G T PSD Missense_Mutation p.S468Y 0.33 deleterious(0.01) benign(0.379) TCGA-F5-6814-01 10 104230590 104230590 C T TMEM180 Silent p.L140L 0.20 TCGA-F5-6814-01 10 104590681 104590681 G A CYP17A1 Silent p.F435F 0.30 TCGA-F5-6814-01 10 104620108 104620108 G A C10orf32 Missense_Mutation p.R54Q 0.38 tolerated(0.07) benign(0.179) TCGA-F5-6814-01 10 105007413 105007413 C A RPEL1 3'UTR 0.15 TCGA-F5-6814-01 10 105007432 105007432 G T RPEL1 3'UTR 0.38 TCGA-F5-6814-01 10 105176386 105176386 A C PDCD11 Missense_Mutation p.K553Q 0.31 deleterious(0.04) probably_damaging(0.987) TCGA-F5-6814-01 10 105179319 105179319 G A PDCD11 Missense_Mutation p.V711I 0.20 tolerated(0.83) benign(0.009) TCGA-F5-6814-01 10 105218079 105218079 C T CALHM1 Missense_Mutation p.A144T 0.43 tolerated(0.58) benign(0.046) TCGA-F5-6814-01 10 105238782 105238782 T G CALHM3 Missense_Mutation p.K3T 0.14 deleterious(0) possibly_damaging(0.514) TCGA-F5-6814-01 10 105330665 105330665 G A NEURL1 Missense_Mutation p.R41Q 0.29 deleterious_low_confidence(0.04) benign(0.241) TCGA-F5-6814-01 10 105761972 105761972 G A SLK Missense_Mutation p.A346T 0.32 tolerated(0.09) probably_damaging(0.999) TCGA-F5-6814-01 10 105785379 105785379 C A SLK Missense_Mutation p.F1203L 0.21 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 10 105831820 105831820 G A COL17A1 Nonsense_Mutation p.R145* 0.14 TCGA-F5-6814-01 10 105883571 105883571 A C SFR1 Missense_Mutation p.N79H 0.34 deleterious(0.02) probably_damaging(0.963) TCGA-F5-6814-01 10 105893386 105893386 G A WDR96 Missense_Mutation p.R1530C 0.10 tolerated(0.15) benign(0.142) TCGA-F5-6814-01 10 105907695 105907695 C A WDR96 Missense_Mutation p.R1241I 0.26 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 10 105920846 105920846 A C WDR96 Missense_Mutation p.D1163E 0.40 tolerated(1) benign(0.001) TCGA-F5-6814-01 10 105965755 105965755 A G WDR96 Missense_Mutation p.V310A 0.11 tolerated(1) benign(0.003) TCGA-F5-6814-01 10 106118317 106118317 G A CCDC147 Silent p.A76A 0.40 TCGA-F5-6814-01 10 106124537 106124537 G T CCDC147 Missense_Mutation p.D163Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 10 1063062 1063062 G T GTPBP4 Missense_Mutation p.M600I 0.29 tolerated(0.43) benign(0.003) TCGA-F5-6814-01 10 107007011 107007011 T G SORCS3 Silent p.P1009P 0.11 TCGA-F5-6814-01 10 108337107 108337107 G T SORCS1 Intron 0.35 TCGA-F5-6814-01 10 108357161 108357161 G A SORCS1 Silent p.F1071F 0.21 TCGA-F5-6814-01 10 108427445 108427445 A G SORCS1 Splice_Site p.X768_splice 0.23 TCGA-F5-6814-01 10 108439454 108439454 C A SORCS1 Missense_Mutation p.E533D 0.21 tolerated(0.82) benign(0.105) TCGA-F5-6814-01 10 112039784 112039784 G A MXI1 Missense_Mutation p.R222Q 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6814-01 10 112362404 112362404 T G SMC3 Missense_Mutation p.F1093C 0.19 deleterious(0) probably_damaging(0.976) TCGA-F5-6814-01 10 112363024 112363024 C A SMC3 Missense_Mutation p.F1186L 0.21 deleterious(0.02) benign(0.326) TCGA-F5-6814-01 10 112647603 112647603 G T PDCD4 Missense_Mutation p.D246Y 0.43 deleterious(0.01) probably_damaging(0.956) TCGA-F5-6814-01 10 112760262 112760262 G T SHOC2 Nonsense_Mutation p.E311* 0.29 TCGA-F5-6814-01 10 114053590 114053590 T G TECTB Nonsense_Mutation p.L193* 0.30 TCGA-F5-6814-01 10 114912121 114912121 G A TCF7L2 Silent p.A397A 0.25 TCGA-F5-6814-01 10 115351962 115351962 G A NRAP Silent p.I1545I 0.15 TCGA-F5-6814-01 10 115364676 115364676 G T NRAP Missense_Mutation p.L1307I 0.36 deleterious(0.02) possibly_damaging(0.555) TCGA-F5-6814-01 10 115391685 115391685 T G NRAP Missense_Mutation p.K557N 0.19 deleterious(0) benign(0.097) TCGA-F5-6814-01 10 115392916 115392916 T G NRAP Missense_Mutation p.K520T 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 10 115457312 115457312 T G CASP7 Missense_Mutation p.D53E 0.16 deleterious(0) probably_damaging(0.936) TCGA-F5-6814-01 10 115531832 115531832 G A PLEKHS1 Missense_Mutation p.R213Q 0.44 tolerated(0.06) possibly_damaging(0.511) TCGA-F5-6814-01 10 115805554 115805554 T A ADRB1 3'UTR 0.29 TCGA-F5-6814-01 10 115885697 115885697 C T C10orf118 Missense_Mutation p.R854Q 0.38 tolerated(0.16) possibly_damaging(0.864) TCGA-F5-6814-01 10 115891846 115891846 C A C10orf118 Nonsense_Mutation p.E585* 0.10 TCGA-F5-6814-01 10 115922585 115922585 T G C10orf118 Missense_Mutation p.K148T 0.08 deleterious_low_confidence(0.04) benign(0.044) TCGA-F5-6814-01 10 115922587 115922587 C A C10orf118 Missense_Mutation p.K147N 0.42 deleterious_low_confidence(0.04) benign(0.025) TCGA-F5-6814-01 10 115922727 115922727 A C C10orf118 Missense_Mutation p.F101V 0.15 tolerated_low_confidence(0.53) benign(0.017) TCGA-F5-6814-01 10 115970482 115970482 C A TDRD1 Missense_Mutation p.F509L 0.39 deleterious(0) probably_damaging(0.916) TCGA-F5-6814-01 10 115970484 115970484 T G TDRD1 Missense_Mutation p.F510C 0.20 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 10 115977311 115977311 G T TDRD1 Missense_Mutation p.K740N 0.46 tolerated(0.35) benign(0.056) TCGA-F5-6814-01 10 115980584 115980584 C A TDRD1 Missense_Mutation p.H918N 0.32 tolerated(0.27) benign(0.038) TCGA-F5-6814-01 10 116207685 116207685 C A ABLIM1 Missense_Mutation p.K563N 0.29 tolerated(0.18) benign(0.017) TCGA-F5-6814-01 10 116233643 116233643 T C ABLIM1 Missense_Mutation p.I372V 0.16 deleterious(0) possibly_damaging(0.876) TCGA-F5-6814-01 10 116595882 116595882 G T FAM160B1 Splice_Site p.X134_splice 0.45 TCGA-F5-6814-01 10 117059636 117059636 G A ATRNL1 Nonsense_Mutation p.W836* 0.29 TCGA-F5-6814-01 10 117093839 117093839 G A ATRNL1 Missense_Mutation p.E1029K 0.22 deleterious(0.01) benign(0.355) TCGA-F5-6814-01 10 117823857 117823857 A C GFRA1 3'UTR 0.09 TCGA-F5-6814-01 10 118204008 118204008 T G PNLIPRP3 Missense_Mutation p.F147V 0.08 deleterious(0.03) benign(0.272) TCGA-F5-6814-01 10 118236245 118236245 C A PNLIPRP3 Missense_Mutation p.F418L 0.14 deleterious(0.03) benign(0.38) TCGA-F5-6814-01 10 118354250 118354250 C T PNLIPRP1 Silent p.F113F 0.46 TCGA-F5-6814-01 10 118708485 118708485 C A KIAA1598 Missense_Mutation p.K186N 0.15 tolerated(0.39) benign(0.001) TCGA-F5-6814-01 10 118969168 118969168 C A KCNK18 Missense_Mutation p.F171L 0.30 tolerated(0.49) benign(0.002) TCGA-F5-6814-01 10 118969526 118969526 T C KCNK18 Missense_Mutation p.F291L 0.24 tolerated(0.19) benign(0.246) TCGA-F5-6814-01 10 119003597 119003597 C A SLC18A2 Missense_Mutation p.F79L 0.35 tolerated(0.34) benign(0.285) TCGA-F5-6814-01 10 119029912 119029912 G T SLC18A2 Missense_Mutation p.D460Y 0.36 deleterious(0.01) possibly_damaging(0.492) TCGA-F5-6814-01 10 119799784 119799784 G A RAB11FIP2 Missense_Mutation p.L216F 0.45 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 10 12071078 12071078 C A UPF2 Nonsense_Mutation p.E271* 0.24 TCGA-F5-6814-01 10 120791976 120791976 C A NANOS1 3'UTR 0.17 TCGA-F5-6814-01 10 120792868 120792868 C A NANOS1 3'UTR 0.12 TCGA-F5-6814-01 10 120810137 120810137 C T EIF3A Missense_Mutation p.R790Q 0.24 deleterious(0.01) unknown(0) TCGA-F5-6814-01 10 120907359 120907359 G A SFXN4 Missense_Mutation p.T249M 0.50 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 10 12126729 12126729 G T DHTKD1 Silent p.S167S 0.32 TCGA-F5-6814-01 10 121285603 121285603 C A RGS10 Nonsense_Mutation p.E66* 0.32 TCGA-F5-6814-01 10 122278383 122278383 A G PPAPDC1A Missense_Mutation p.N99D 0.21 tolerated(0.21) possibly_damaging(0.534) TCGA-F5-6814-01 10 12277103 12277103 C A CDC123 Silent p.V182V 0.29 TCGA-F5-6814-01 10 1230846 1230846 G A ADARB2 Silent p.L666L 0.29 TCGA-F5-6814-01 10 123239238 123239238 A C FGFR2 3'Flank 0.35 TCGA-F5-6814-01 10 123239422 123239422 G A FGFR2 Silent p.Y806Y 0.10 TCGA-F5-6814-01 10 123244913 123244913 C T FGFR2 Missense_Mutation p.E732K 0.46 deleterious(0) benign(0.333) TCGA-F5-6814-01 10 123263405 123263405 C A FGFR2 Missense_Mutation p.R447S 0.20 deleterious(0.01) possibly_damaging(0.557) TCGA-F5-6814-01 10 124189142 124189142 G A PLEKHA1 Silent p.E301E 0.36 TCGA-F5-6814-01 10 124354022 124354022 G A DMBT1 Silent p.P847P 0.25 TCGA-F5-6814-01 10 124360518 124360518 A G DMBT1 Missense_Mutation p.T1108A 0.13 tolerated(0.51) unknown(0) TCGA-F5-6814-01 10 124389915 124389915 A C DMBT1 Silent p.T1849T 0.10 TCGA-F5-6814-01 10 124390683 124390683 A G DMBT1 Missense_Mutation p.T1949A 0.33 tolerated(0.15) probably_damaging(0.982) TCGA-F5-6814-01 10 124395538 124395538 G T DMBT1 Nonsense_Mutation p.E2065* 0.32 TCGA-F5-6814-01 10 124402684 124402684 C T DMBT1 Missense_Mutation p.R2338C 0.15 deleterious(0.02) probably_damaging(0.912) TCGA-F5-6814-01 10 124459219 124459219 G A C10orf120 Missense_Mutation p.P30S 0.08 tolerated(0.8) benign(0.068) TCGA-F5-6814-01 10 124594231 124594231 A C CUZD1 Missense_Mutation p.I458S 0.40 deleterious(0) probably_damaging(0.958) TCGA-F5-6814-01 10 124697569 124697569 G A C10orf88 Missense_Mutation p.S252L 0.36 tolerated(0.17) benign(0.011) TCGA-F5-6814-01 10 124754188 124754188 C T IKZF5 Missense_Mutation p.R123H 0.27 deleterious(0.04) benign(0.008) TCGA-F5-6814-01 10 124921871 124921871 G A BUB3 Silent p.E232E 0.39 TCGA-F5-6814-01 10 125805554 125805554 C T CHST15 Missense_Mutation p.E59K 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.558) TCGA-F5-6814-01 10 126186674 126186674 G A LHPP Missense_Mutation p.A201T 0.21 tolerated(0.11) benign(0.067) TCGA-F5-6814-01 10 126660545 126660545 A T ZRANB1 Missense_Mutation p.Q338H 0.21 tolerated(0.27) benign(0) TCGA-F5-6814-01 10 127344577 127344577 C A TEX36 Missense_Mutation p.W151C 0.37 tolerated(0.14) probably_damaging(0.971) TCGA-F5-6814-01 10 127422042 127422042 A C EDRF1 Missense_Mutation p.K400Q 0.10 deleterious(0.01) benign(0.065) TCGA-F5-6814-01 10 127436480 127436480 G A EDRF1 Missense_Mutation p.D1008N 0.27 deleterious(0.02) benign(0.016) TCGA-F5-6814-01 10 127459109 127459109 C A MMP21 Missense_Mutation p.R344I 0.34 deleterious(0.01) possibly_damaging(0.635) TCGA-F5-6814-01 10 127505059 127505059 G T UROS Missense_Mutation p.L4I 0.21 tolerated(0.09) probably_damaging(0.949) TCGA-F5-6814-01 10 127527689 127527689 G A DHX32 Nonsense_Mutation p.R588* 0.23 TCGA-F5-6814-01 10 127548516 127548516 C A DHX32 Nonsense_Mutation p.E169* 0.32 TCGA-F5-6814-01 10 128150020 128150020 C T C10orf90 Missense_Mutation p.E557K 0.13 deleterious(0) benign(0.23) TCGA-F5-6814-01 10 128192605 128192606 - T C10orf90 Frame_Shift_Ins p.D389Gfs*58 0.22 TCGA-F5-6814-01 10 128192731 128192731 T G C10orf90 Missense_Mutation p.E346D 0.11 tolerated(0.06) benign(0.439) TCGA-F5-6814-01 10 128908585 128908585 G A DOCK1 Missense_Mutation p.E843K 0.21 tolerated(0.57) benign(0.305) TCGA-F5-6814-01 10 128936073 128936073 G A FAM196A 3'UTR 0.14 TCGA-F5-6814-01 10 129347615 129347615 G T NPS 5'UTR 0.10 TCGA-F5-6814-01 10 129347616 129347616 A G NPS 5'UTR 0.14 TCGA-F5-6814-01 10 129350793 129350793 G T NPS Nonsense_Mutation p.E54* 0.26 TCGA-F5-6814-01 10 129350886 129350886 C A NPS Missense_Mutation p.Q85K 0.51 deleterious(0.03) benign(0.02) TCGA-F5-6814-01 10 129868684 129868684 C T PTPRE Silent p.F421F 0.55 TCGA-F5-6814-01 10 129903471 129903471 C T MKI67 Silent p.T2211T 0.08 TCGA-F5-6814-01 10 129905984 129905984 C T MKI67 Missense_Mutation p.E1374K 0.41 tolerated(1) benign(0) TCGA-F5-6814-01 10 129907127 129907127 T G MKI67 Missense_Mutation p.K993Q 0.06 tolerated(0.17) benign(0.011) TCGA-F5-6814-01 10 13152422 13152422 G T OPTN Missense_Mutation p.E105D 0.31 deleterious(0) benign(0.219) TCGA-F5-6814-01 10 13160930 13160930 G T OPTN Missense_Mutation p.K223N 0.38 tolerated(0.16) benign(0.309) TCGA-F5-6814-01 10 131640502 131640502 C T EBF3 Missense_Mutation p.R408H 0.37 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-F5-6814-01 10 13320207 13320207 G T PHYH 3'UTR 0.22 TCGA-F5-6814-01 10 13320314 13320314 C A PHYH Missense_Mutation p.R335I 0.12 deleterious(0) possibly_damaging(0.897) TCGA-F5-6814-01 10 134261330 134261330 C A C10orf91 Missense_Mutation p.S68Y 0.12 tolerated_low_confidence(0.24) benign(0) TCGA-F5-6814-01 10 134674421 134674421 C A TTC40 Missense_Mutation p.E1652D 0.37 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 10 134691451 134691451 C T TTC40 Silent p.E1382E 0.19 TCGA-F5-6814-01 10 134726573 134726573 G A TTC40 Silent p.I770I 0.29 TCGA-F5-6814-01 10 134752226 134752226 G T TTC40 Missense_Mutation p.L135I 0.29 tolerated(0.14) possibly_damaging(0.889) TCGA-F5-6814-01 10 135025320 135025320 C T KNDC1 Silent p.N1398N 0.32 TCGA-F5-6814-01 10 135053457 135053457 C T VENTX Missense_Mutation p.R142C 0.09 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 10 135097445 135097445 A C TUBGCP2 Missense_Mutation p.Y724D 0.09 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 135111588 135111588 G A TUBGCP2 Nonsense_Mutation p.R162* 0.40 TCGA-F5-6814-01 10 135113582 135113582 G A TUBGCP2 Silent p.D62D 0.36 TCGA-F5-6814-01 10 1421353 1421353 T C ADARB2 Missense_Mutation p.K35E 0.17 deleterious_low_confidence(0) benign(0.345) TCGA-F5-6814-01 10 14890814 14890814 G A HSPA14 Missense_Mutation p.R99Q 0.20 tolerated(0.3) benign(0.007) TCGA-F5-6814-01 10 14896201 14896201 C A HSPA14 Missense_Mutation p.S271Y 0.19 deleterious(0.02) possibly_damaging(0.73) TCGA-F5-6814-01 10 15151828 15151828 T C NMT2 Missense_Mutation p.D450G 0.44 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 10 15154813 15154813 C T NMT2 Silent p.A440A 0.37 TCGA-F5-6814-01 10 15255190 15255190 G A FAM171A1 Silent p.S799S 0.17 TCGA-F5-6814-01 10 15255770 15255770 T G FAM171A1 Missense_Mutation p.D606A 0.10 deleterious(0.03) possibly_damaging(0.814) TCGA-F5-6814-01 10 15296857 15296857 A G FAM171A1 Missense_Mutation p.V147A 0.40 tolerated(0.06) benign(0.035) TCGA-F5-6814-01 10 16553293 16553293 T G PTER 3'UTR 0.17 TCGA-F5-6814-01 10 16961987 16961987 G A CUBN Nonsense_Mutation p.R2266* 0.30 TCGA-F5-6814-01 10 17113875 17113875 T C CUBN Silent p.K799K 0.34 TCGA-F5-6814-01 10 17142181 17142181 C T CUBN Missense_Mutation p.E530K 0.35 deleterious(0.02) probably_damaging(0.914) TCGA-F5-6814-01 10 17199700 17199700 G A TRDMT1 Silent p.N209N 0.10 TCGA-F5-6814-01 10 17203540 17203540 T G TRDMT1 Missense_Mutation p.K111Q 0.22 deleterious(0.03) benign(0.19) TCGA-F5-6814-01 10 17373415 17373415 A C ST8SIA6 Missense_Mutation p.F172V 0.17 deleterious(0.02) possibly_damaging(0.472) TCGA-F5-6814-01 10 17373448 17373448 C A ST8SIA6 Nonsense_Mutation p.E161* 0.36 TCGA-F5-6814-01 10 17432535 17432535 C T ST8SIA6 Silent p.T95T 0.35 TCGA-F5-6814-01 10 17645999 17645999 C T PTPLA Missense_Mutation p.G102E 0.30 deleterious(0.01) probably_damaging(0.974) TCGA-F5-6814-01 10 17737158 17737158 C T STAM Missense_Mutation p.R216C 0.26 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 10 18964302 18964302 G T ARL5B 3'UTR 0.33 TCGA-F5-6814-01 10 19884341 19884341 G A MALRD1 Missense_Mutation p.D1346N 0.14 deleterious(0) possibly_damaging(0.859) TCGA-F5-6814-01 10 19896721 19896721 C A MALRD1 Missense_Mutation p.S1366Y 0.57 tolerated(0.07) benign(0.111) TCGA-F5-6814-01 10 20432241 20432241 G T PLXDC2 Nonsense_Mutation p.E187* 0.27 TCGA-F5-6814-01 10 21134213 21134213 T G NEBL Missense_Mutation p.K401Q 0.40 tolerated(0.09) benign(0.213) TCGA-F5-6814-01 10 21962362 21962362 G A MLLT10 Missense_Mutation p.D379N 0.37 deleterious(0.01) benign(0.149) TCGA-F5-6814-01 10 22029018 22029018 A G MLLT10 Silent p.Q1005Q 0.07 TCGA-F5-6814-01 10 22030869 22030869 G T MLLT10 Missense_Mutation p.R1055I 0.10 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 10 22617070 22617070 C T BMI1 Missense_Mutation p.R145W 0.37 deleterious(0.01) benign(0.004) TCGA-F5-6814-01 10 22690153 22690153 C A SPAG6 Missense_Mutation p.L421I 0.47 tolerated(0.1) possibly_damaging(0.905) TCGA-F5-6814-01 10 23326238 23326238 C T ARMC3 Missense_Mutation p.R817C 0.44 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 23729812 23729812 G T OTUD1 Nonsense_Mutation p.E476* 0.36 TCGA-F5-6814-01 10 23731005 23731005 T G OTUD1 3'UTR 0.42 TCGA-F5-6814-01 10 24833307 24833307 C A KIAA1217 Nonsense_Mutation p.S1703* 0.09 TCGA-F5-6814-01 10 24873572 24873572 T G ARHGAP21 Missense_Mutation p.E1882D 0.20 tolerated_low_confidence(0.39) benign(0.003) TCGA-F5-6814-01 10 24908628 24908628 T G ARHGAP21 Missense_Mutation p.K732N 0.18 tolerated(0.11) benign(0.326) TCGA-F5-6814-01 10 25279459 25279459 A G ENKUR Missense_Mutation p.I176T 0.23 deleterious(0) benign(0.219) TCGA-F5-6814-01 10 25284708 25284708 A C ENKUR Missense_Mutation p.F105C 0.45 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 25284712 25284712 T G ENKUR Missense_Mutation p.N104H 0.28 deleterious(0) probably_damaging(0.933) TCGA-F5-6814-01 10 25313489 25313489 G T THNSL1 Missense_Mutation p.R446I 0.28 deleterious(0.04) benign(0.098) TCGA-F5-6814-01 10 25861728 25861728 G T GPR158 Missense_Mutation p.Q555H 0.15 tolerated(0.25) benign(0.002) TCGA-F5-6814-01 10 25887170 25887170 C T GPR158 Missense_Mutation p.S872L 0.32 deleterious(0.01) benign(0.149) TCGA-F5-6814-01 10 26462726 26462726 C T MYO3A Missense_Mutation p.A1178V 0.27 tolerated(0.4) benign(0.001) TCGA-F5-6814-01 10 26463308 26463308 C A MYO3A Missense_Mutation p.S1372Y 0.33 deleterious_low_confidence(0.03) benign(0.192) TCGA-F5-6814-01 10 26506560 26506560 C A GAD2 Missense_Mutation p.A33D 0.43 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F5-6814-01 10 26534860 26534860 C A GAD2 Missense_Mutation p.S284Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 10 27012787 27012787 G A PDSS1 Missense_Mutation p.R221Q 0.08 tolerated(0.06) possibly_damaging(0.477) TCGA-F5-6814-01 10 27031490 27031490 G A PDSS1 Missense_Mutation p.R364Q 0.13 tolerated(0.3) benign(0.037) TCGA-F5-6814-01 10 27303553 27303553 C A ANKRD26 Missense_Mutation p.D1532Y 0.08 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 10 27324210 27324210 C A ANKRD26 Missense_Mutation p.D1057Y 0.34 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 10 27436535 27436535 G A YME1L1 Silent p.F77F 0.22 TCGA-F5-6814-01 10 27537301 27537301 T G RP11-85G18.6 Intron 0.54 TCGA-F5-6814-01 10 27703027 27703027 C T PTCHD3 Silent p.P51P 0.22 TCGA-F5-6814-01 10 28274075 28274075 C T ARMC4 Missense_Mutation p.A150T 0.24 tolerated(0.42) benign(0.002) TCGA-F5-6814-01 10 28879665 28879665 G T WAC Nonsense_Mutation p.E172* 0.36 TCGA-F5-6814-01 10 28899645 28899645 A G WAC Missense_Mutation p.T395A 0.53 deleterious(0.02) probably_damaging(0.993) TCGA-F5-6814-01 10 29747149 29747149 C A SVIL 3'UTR 0.10 TCGA-F5-6814-01 10 29775041 29775041 C T SVIL Silent p.P1584P 0.38 TCGA-F5-6814-01 10 29811343 29811343 C A SVIL Nonsense_Mutation p.E1129* 0.19 TCGA-F5-6814-01 10 29843859 29843859 C A SVIL Nonsense_Mutation p.E5* 0.25 TCGA-F5-6814-01 10 30318371 30318371 G T KIAA1462 Missense_Mutation p.L236I 0.33 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 10 30602623 30602623 T C MTPAP Missense_Mutation p.K555R 0.35 tolerated(0.26) benign(0.02) TCGA-F5-6814-01 10 30638149 30638149 C A MTPAP Missense_Mutation p.R19I 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.534) TCGA-F5-6814-01 10 30727901 30727901 G T MAP3K8 Nonsense_Mutation p.E12* 0.48 TCGA-F5-6814-01 10 30739240 30739240 G A MAP3K8 Silent p.R186R 0.29 TCGA-F5-6814-01 10 31610367 31610367 T C ZEB1 Intron 0.11 TCGA-F5-6814-01 10 3181156 3181156 C T PITRM1 Missense_Mutation p.D954N 0.09 tolerated(0.13) benign(0.179) TCGA-F5-6814-01 10 3197844 3197844 C T PITRM1 Silent p.T520T 0.41 TCGA-F5-6814-01 10 32307473 32307473 C T KIF5B Missense_Mutation p.R775Q 0.39 deleterious(0.04) probably_damaging(0.992) TCGA-F5-6814-01 10 32594713 32594713 G T EPC1 Silent p.L100L 0.44 TCGA-F5-6814-01 10 32780849 32780849 G T CCDC7 Splice_Site p.X266_splice 0.25 TCGA-F5-6814-01 10 32807417 32807417 A C CCDC7 Missense_Mutation p.K326T 0.16 tolerated(0.06) probably_damaging(0.996) TCGA-F5-6814-01 10 32854496 32854496 G A CCDC7 Missense_Mutation p.R382H 0.41 tolerated(0.36) benign(0) TCGA-F5-6814-01 10 329332 329332 C T DIP2C Missense_Mutation p.E1392K 0.38 deleterious(0.01) benign(0.358) TCGA-F5-6814-01 10 33000605 33000605 A C C10ORF68 Missense_Mutation p.K146T 0.08 deleterious(0.01) probably_damaging(0.969) TCGA-F5-6814-01 10 33000631 33000631 G T C10ORF68 Nonsense_Mutation p.E155* 0.08 TCGA-F5-6814-01 10 33018321 33018321 A C C10ORF68 Missense_Mutation p.K254N 0.09 tolerated(0.08) probably_damaging(0.978) TCGA-F5-6814-01 10 33491545 33491545 G A NRP1 Intron 0.19 TCGA-F5-6814-01 10 33491595 33491595 G A NRP1 Intron 0.49 TCGA-F5-6814-01 10 33502112 33502112 C A NRP1 Intron 0.53 TCGA-F5-6814-01 10 33510764 33510764 C A NRP1 Missense_Mutation p.D389Y 0.48 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 10 33515072 33515072 T C NRP1 Missense_Mutation p.N376S 0.40 tolerated(0.57) benign(0.001) TCGA-F5-6814-01 10 34673069 34673069 C T PARD3 Missense_Mutation p.R335K 0.26 tolerated(1) benign(0.001) TCGA-F5-6814-01 10 35300826 35300826 G A CUL2 Missense_Mutation p.R705C 0.22 deleterious(0) benign(0.003) TCGA-F5-6814-01 10 35327980 35327980 G A CUL2 Nonsense_Mutation p.R268* 0.41 TCGA-F5-6814-01 10 35456615 35456615 C A CREM Intron 0.28 TCGA-F5-6814-01 10 372955 372955 A C DIP2C Missense_Mutation p.I1305M 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-F5-6814-01 10 37419228 37419228 T G ANKRD30A Missense_Mutation p.H88Q 0.23 deleterious(0) benign(0.087) TCGA-F5-6814-01 10 37430875 37430875 C T ANKRD30A Silent p.F294F 0.19 TCGA-F5-6814-01 10 37447323 37447323 C A ANKRD30A Missense_Mutation p.S545Y 0.12 deleterious(0) benign(0.193) TCGA-F5-6814-01 10 37454071 37454071 T C ANKRD30A Silent p.S628S 0.09 TCGA-F5-6814-01 10 37486234 37486234 C T ANKRD30A Silent p.F824F 0.39 TCGA-F5-6814-01 10 37486358 37486358 C A ANKRD30A Missense_Mutation p.S833Y 0.15 tolerated(0.13) probably_damaging(0.962) TCGA-F5-6814-01 10 37488710 37488710 T C ANKRD30A Silent p.D868D 0.30 TCGA-F5-6814-01 10 38120749 38120749 T C ZNF248 Missense_Mutation p.R512G 0.27 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 38240881 38240881 T G ZNF25 3'UTR 0.29 TCGA-F5-6814-01 10 38343779 38343779 G T ZNF33A Nonsense_Mutation p.E243* 0.24 TCGA-F5-6814-01 10 38344518 38344518 G T ZNF33A Missense_Mutation p.R489I 0.31 deleterious(0.02) benign(0.03) TCGA-F5-6814-01 10 38345022 38345022 G T ZNF33A Missense_Mutation p.R657I 0.40 deleterious(0) probably_damaging(0.948) TCGA-F5-6814-01 10 38406783 38406783 G T ZNF37A Missense_Mutation p.R235I 0.49 deleterious(0) benign(0.077) TCGA-F5-6814-01 10 38407322 38407322 G T ZNF37A Nonsense_Mutation p.E415* 0.15 TCGA-F5-6814-01 10 38407574 38407574 C A ZNF37A Missense_Mutation p.Q499K 0.40 tolerated(0.13) benign(0) TCGA-F5-6814-01 10 403806 403806 C T DIP2C Missense_Mutation p.D956N 0.39 tolerated(0.1) benign(0.013) TCGA-F5-6814-01 10 43015580 43015580 C A ZNF37BP RNA 0.32 TCGA-F5-6814-01 10 43087816 43087816 A C ZNF33B 3'UTR 0.50 TCGA-F5-6814-01 10 43088176 43088176 C A ZNF33B Missense_Mutation p.R741I 0.09 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 10 43088999 43088999 T G ZNF33B Missense_Mutation p.K467Q 0.31 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 10 43285953 43285953 T G BMS1 Silent p.V210V 0.09 TCGA-F5-6814-01 10 43601853 43601853 C T RET Silent p.F299F 0.29 TCGA-F5-6814-01 10 43650538 43650538 T G CSGALNACT2 5'UTR 0.24 TCGA-F5-6814-01 10 43650562 43650562 G T CSGALNACT2 5'UTR 0.37 TCGA-F5-6814-01 10 43651251 43651251 C T CSGALNACT2 Silent p.F218F 0.33 TCGA-F5-6814-01 10 43701369 43701369 C T RASGEF1A Missense_Mutation p.D66N 0.37 deleterious(0) possibly_damaging(0.856) TCGA-F5-6814-01 10 43882865 43882865 G A HNRNPF Silent p.F156F 0.12 TCGA-F5-6814-01 10 44052737 44052737 T G ZNF239 Missense_Mutation p.K264T 0.31 deleterious(0.01) probably_damaging(0.94) TCGA-F5-6814-01 10 44871393 44871393 T G CXCL12 3'Flank 0.14 TCGA-F5-6814-01 10 45473153 45473153 A C C10orf10 Missense_Mutation p.F109C 0.29 deleterious(0) probably_damaging(0.938) TCGA-F5-6814-01 10 454942 454942 C A DIP2C Missense_Mutation p.R358I 0.16 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 10 45499000 45499000 A C ZNF22 Missense_Mutation p.K62Q 0.38 deleterious(0.01) probably_damaging(0.977) TCGA-F5-6814-01 10 45602160 45602160 C A RSU1P2 RNA 0.27 TCGA-F5-6814-01 10 45602504 45602504 T C RSU1P2 RNA 0.33 TCGA-F5-6814-01 10 45877970 45877970 G A ALOX5 Missense_Mutation p.E64K 0.35 deleterious(0.04) benign(0.217) TCGA-F5-6814-01 10 45891327 45891327 T A ALOX5 Missense_Mutation p.I125N 0.41 tolerated(0.28) benign(0.004) TCGA-F5-6814-01 10 45891335 45891335 C G ALOX5 Missense_Mutation p.L128V 0.44 tolerated(0.14) benign(0.022) TCGA-F5-6814-01 10 45941026 45941026 G A ALOX5 Missense_Mutation p.R639H 0.42 deleterious(0.01) benign(0.025) TCGA-F5-6814-01 10 45956732 45956732 C T MARCH8 Missense_Mutation p.E124K 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 46143791 46143791 T G ZFAND4 Missense_Mutation p.I174L 0.11 tolerated(0.63) benign(0.001) TCGA-F5-6814-01 10 461741 461741 A C DIP2C Missense_Mutation p.F276C 0.08 deleterious(0.01) probably_damaging(0.936) TCGA-F5-6814-01 10 47086895 47086895 G A NPY4R Missense_Mutation p.V38M 0.09 tolerated(0.21) benign(0.042) TCGA-F5-6814-01 10 47088106 47088106 G T NPY4R 3'UTR 0.16 TCGA-F5-6814-01 10 47909781 47909781 C T FAM21B Missense_Mutation p.A293V 0.09 tolerated(0.07) probably_damaging(0.971) TCGA-F5-6814-01 10 48370485 48370485 C A ZNF488 5'UTR 0.30 TCGA-F5-6814-01 10 48382206 48382206 G A RBP3 Missense_Mutation p.A1148V 0.27 deleterious(0.02) possibly_damaging(0.787) TCGA-F5-6814-01 10 4889477 4889477 T G AKR1E2 Intron 0.49 TCGA-F5-6814-01 10 49385912 49385912 A G FRMPD2 Intron 0.43 TCGA-F5-6814-01 10 49609670 49609670 T G MAPK8 5'UTR 0.41 TCGA-F5-6814-01 10 49944228 49944228 G A WDFY4 Intron 0.62 TCGA-F5-6814-01 10 49968462 49968462 T C WDFY4 Silent p.L844L 0.24 TCGA-F5-6814-01 10 49985005 49985005 T C WDFY4 Missense_Mutation p.F1025S 0.11 deleterious(0) probably_damaging(0.912) TCGA-F5-6814-01 10 50121506 50121506 G A LRRC18 Missense_Mutation p.P232L 0.34 tolerated(0.32) benign(0.003) TCGA-F5-6814-01 10 50121895 50121895 G A LRRC18 Silent p.N102N 0.30 TCGA-F5-6814-01 10 50122005 50122005 G A LRRC18 Missense_Mutation p.P66S 0.28 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 10 50165326 50165326 C T WDFY4 Silent p.F2710F 0.17 TCGA-F5-6814-01 10 50178193 50178193 G T WDFY4 Missense_Mutation p.E2929D 0.25 deleterious(0) probably_damaging(0.926) TCGA-F5-6814-01 10 50178268 50178268 C A WDFY4 Missense_Mutation p.S2954R 0.13 deleterious(0) possibly_damaging(0.774) TCGA-F5-6814-01 10 5020095 5020095 G A AKR1C1 3'UTR 0.25 TCGA-F5-6814-01 10 50311870 50311870 G T VSTM4 Intron 0.32 TCGA-F5-6814-01 10 5031998 5031998 T G AKR1C2 3'UTR 0.26 TCGA-F5-6814-01 10 50341859 50341859 G T FAM170B Missense_Mutation p.F35L 0.33 tolerated(0.64) benign(0.004) TCGA-F5-6814-01 10 50669558 50669558 C T ERCC6 Missense_Mutation p.A1275T 0.13 tolerated(0.15) benign(0.033) TCGA-F5-6814-01 10 50678729 50678729 C A ERCC6 Missense_Mutation p.D1093Y 0.25 deleterious(0.01) possibly_damaging(0.664) TCGA-F5-6814-01 10 50679088 50679088 G A ERCC6 Silent p.L1001L 0.26 TCGA-F5-6814-01 10 50723441 50723441 G A ERCC6-PGBD3 Nonsense_Mutation p.R1042* 0.31 TCGA-F5-6814-01 10 50736556 50736556 T C ERCC6-PGBD3 Missense_Mutation p.K187E 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 10 50820709 50820709 T G SLC18A3 3'UTR 0.11 TCGA-F5-6814-01 10 50902566 50902566 T G C10orf53 Intron 0.33 TCGA-F5-6814-01 10 50948782 50948782 C T OGDHL Missense_Mutation p.S705N 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 50953978 50953978 G C OGDHL Missense_Mutation p.P448A 0.43 tolerated(1) possibly_damaging(0.877) TCGA-F5-6814-01 10 51123977 51123977 C T PARG Missense_Mutation p.D90N 0.35 tolerated(0.61) possibly_damaging(0.801) TCGA-F5-6814-01 10 5147819 5147819 G T AKR1C3 Missense_Mutation p.M293I 0.42 deleterious(0.02) benign(0.136) TCGA-F5-6814-01 10 51562463 51562463 C A MSMB 3'UTR 0.31 TCGA-F5-6814-01 10 51585292 51585292 G T NCOA4 Missense_Mutation p.R480I 0.21 tolerated(0.09) possibly_damaging(0.723) TCGA-F5-6814-01 10 51589329 51589329 A G NCOA4 3'UTR 0.23 TCGA-F5-6814-01 10 51889624 51889624 C T FAM21A Missense_Mutation p.A1178V 0.53 tolerated(0.27) benign(0.059) TCGA-F5-6814-01 10 5197872 5197872 T G AKR1CL1 3'Flank 0.11 TCGA-F5-6814-01 10 51994274 51994274 T G ASAH2 Missense_Mutation p.K242N 0.10 tolerated(0.18) benign(0.091) TCGA-F5-6814-01 10 52003017 52003017 C T ASAH2 Missense_Mutation p.R152Q 0.36 deleterious(0) probably_damaging(0.965) TCGA-F5-6814-01 10 52751234 52751234 A C PRKG1 Missense_Mutation p.E32D 0.60 tolerated(0.29) benign(0.012) TCGA-F5-6814-01 10 54011349 54011349 T G PRKG1 Missense_Mutation p.F366V 0.25 tolerated(0.49) benign(0.421) TCGA-F5-6814-01 10 54048755 54048755 T C PRKG1 Splice_Site p.X632_splice 0.45 TCGA-F5-6814-01 10 54053734 54053734 G A PRKG1 3'UTR 0.40 TCGA-F5-6814-01 10 54053753 54053753 C T PRKG1 3'UTR 0.21 TCGA-F5-6814-01 10 5436296 5436296 C T TUBAL3 Silent p.E175E 0.41 TCGA-F5-6814-01 10 55566324 55566324 C A PCDH15 3'UTR 0.11 TCGA-F5-6814-01 10 55569033 55569033 C A PCDH15 Nonsense_Mutation p.E527* 0.16 TCGA-F5-6814-01 10 55663029 55663029 T G PCDH15 Missense_Mutation p.M1159L 0.23 tolerated(0.14) benign(0.27) TCGA-F5-6814-01 10 55943354 55943354 C A PCDH15 Splice_Site p.X481_splice 0.32 TCGA-F5-6814-01 10 56138575 56138575 G A PCDH15 Silent p.F95F 0.26 TCGA-F5-6814-01 10 5781857 5781857 C A FAM208B Missense_Mutation p.S575Y 0.40 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 10 5782128 5782128 G T FAM208B Missense_Mutation p.K665N 0.34 deleterious(0) probably_damaging(0.957) TCGA-F5-6814-01 10 5807933 5807933 A G GDI2 3'UTR 0.11 TCGA-F5-6814-01 10 5945092 5945092 G A FBXO18 Silent p.P88P 0.23 TCGA-F5-6814-01 10 6002370 6002370 C A IL15RA Missense_Mutation p.K181N 0.13 deleterious(0.03) possibly_damaging(0.447) TCGA-F5-6814-01 10 60560808 60560808 T C BICC1 Splice_Site p.X672_splice 0.56 TCGA-F5-6814-01 10 6063598 6063598 G A IL2RA Silent p.F142F 0.47 TCGA-F5-6814-01 10 61011317 61011317 C A FAM13C Intron 0.33 TCGA-F5-6814-01 10 61012614 61012614 T G FAM13C Missense_Mutation p.K493Q 0.31 tolerated(0.15) probably_damaging(0.962) TCGA-F5-6814-01 10 61022406 61022406 C A FAM13C Splice_Site p.X342_splice 0.42 TCGA-F5-6814-01 10 61612436 61612436 C A CCDC6 Nonsense_Mutation p.E110* 0.42 TCGA-F5-6814-01 10 61718315 61718315 C T C10orf40 Missense_Mutation p.V39I 0.08 tolerated_low_confidence(0.61) benign(0) TCGA-F5-6814-01 10 61719098 61719098 G T C10orf40 Intron 0.10 TCGA-F5-6814-01 10 61815565 61815565 A C ANK3 Missense_Mutation p.S4306A 0.11 benign(0) TCGA-F5-6814-01 10 61819660 61819660 C A ANK3 Intron 0.38 TCGA-F5-6814-01 10 61823971 61823971 G T ANK3 Missense_Mutation p.S4132Y 0.33 possibly_damaging(0.771) TCGA-F5-6814-01 10 61830472 61830472 G A ANK3 Silent p.D3389D 0.13 TCGA-F5-6814-01 10 61832086 61832086 G T ANK3 Silent p.V2851V 0.38 TCGA-F5-6814-01 10 61874055 61874055 G T ANK3 Missense_Mutation p.S959Y 0.34 probably_damaging(0.974) TCGA-F5-6814-01 10 61958235 61958235 G A ANK3 Silent p.L518L 0.26 TCGA-F5-6814-01 10 6245223 6245223 G T PFKFB3 5'UTR 0.26 TCGA-F5-6814-01 10 62547833 62547833 A C CDK1 Missense_Mutation p.I112L 0.24 tolerated(1) benign(0.107) TCGA-F5-6814-01 10 6258727 6258727 A C PFKFB3 Missense_Mutation p.K142T 0.38 benign(0.015) TCGA-F5-6814-01 10 62645903 62645903 G A RHOBTB1 Silent p.F514F 0.36 TCGA-F5-6814-01 10 63212550 63212550 C T TMEM26 Intron 0.38 TCGA-F5-6814-01 10 63816914 63816914 G T ARID5B Missense_Mutation p.K295N 0.32 deleterious(0.05) probably_damaging(0.977) TCGA-F5-6814-01 10 63851576 63851576 G A ARID5B Missense_Mutation p.R785H 0.19 tolerated(0.26) probably_damaging(0.976) TCGA-F5-6814-01 10 63999359 63999359 G T RTKN2 Intron 0.29 TCGA-F5-6814-01 10 64022544 64022544 G A RTKN2 Nonsense_Mutation p.R33* 0.10 TCGA-F5-6814-01 10 64136488 64136488 G T ZNF365 Missense_Mutation p.R179I 0.28 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 10 64403589 64403589 T C ZNF365 Intron 0.17 TCGA-F5-6814-01 10 64567235 64567235 T G ADO 3'UTR 0.35 TCGA-F5-6814-01 10 64567934 64567934 A C ADO 3'UTR 0.40 TCGA-F5-6814-01 10 64968359 64968359 G A JMJD1C Nonsense_Mutation p.R1024* 0.14 TCGA-F5-6814-01 10 64968560 64968560 C A JMJD1C Nonsense_Mutation p.E957* 0.14 TCGA-F5-6814-01 10 64973852 64973852 C T JMJD1C Missense_Mutation p.R692Q 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 10 65225477 65225477 A G JMJD1C 5'UTR 0.31 TCGA-F5-6814-01 10 68687299 68687299 G T LRRTM3 Nonsense_Mutation p.E209* 0.48 TCGA-F5-6814-01 10 69571170 69571170 T G DNAJC12 Intron 0.35 TCGA-F5-6814-01 10 69672431 69672431 G T SIRT1 Nonsense_Mutation p.E520* 0.33 TCGA-F5-6814-01 10 69684892 69684892 A C HERC4 Missense_Mutation p.F972C 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 10 69726519 69726519 A C HERC4 Missense_Mutation p.F616C 0.30 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 10 69797927 69797927 C A HERC4 Splice_Site p.X129_splice 0.33 TCGA-F5-6814-01 10 69902852 69902852 C A MYPN Missense_Mutation p.S353Y 0.21 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 69959306 69959306 C A MYPN Missense_Mutation p.S1156Y 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 70098433 70098433 G A HNRNPH3 Missense_Mutation p.G142E 0.15 deleterious(0.02) benign(0.001) TCGA-F5-6814-01 10 70123744 70123744 T G RUFY2 Missense_Mutation p.K519N 0.43 tolerated(0.06) benign(0.049) TCGA-F5-6814-01 10 70136807 70136807 G T RUFY2 Intron 0.24 TCGA-F5-6814-01 10 70333143 70333143 G A TET1 Missense_Mutation p.E350K 0.16 tolerated(1) benign(0) TCGA-F5-6814-01 10 70693997 70693997 G T DDX50 Nonsense_Mutation p.E428* 0.09 TCGA-F5-6814-01 10 71003077 71003077 C T HKDC1 Silent p.F277F 0.40 TCGA-F5-6814-01 10 71021022 71021022 G A HKDC1 Missense_Mutation p.E782K 0.50 tolerated(0.47) benign(0.181) TCGA-F5-6814-01 10 7217996 7217996 T C SFMBT2 Missense_Mutation p.E647G 0.19 tolerated(0.08) benign(0.342) TCGA-F5-6814-01 10 72326345 72326345 G A PALD1 Silent p.S809S 0.27 TCGA-F5-6814-01 10 72500856 72500856 G A ADAMTS14 Missense_Mutation p.R624H 0.41 tolerated(0.13) probably_damaging(0.999) TCGA-F5-6814-01 10 73476043 73476043 C T C10orf105 Missense_Mutation p.A18T 0.45 tolerated(0.38) benign(0.001) TCGA-F5-6814-01 10 73510802 73510802 C A C10orf54 3'UTR 0.42 TCGA-F5-6814-01 10 73562740 73562740 C A CDH23 Missense_Mutation p.P283Q 0.31 tolerated(0.06) possibly_damaging(0.726) TCGA-F5-6814-01 10 73562752 73562752 C G CDH23 Missense_Mutation p.S287W 0.14 deleterious(0.01) probably_damaging(0.981) TCGA-F5-6814-01 10 74135628 74135628 T C MICU1 Missense_Mutation p.T395A 0.30 deleterious(0.03) benign(0.196) TCGA-F5-6814-01 10 7423908 7423908 T A SFMBT2 5'UTR 0.36 TCGA-F5-6814-01 10 74310979 74310979 C A MICU1 Missense_Mutation p.D151Y 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 74881996 74881996 T G NUDT13 Missense_Mutation p.I96S 0.27 deleterious(0) possibly_damaging(0.673) TCGA-F5-6814-01 10 75003147 75003147 G T DNAJC9 3'UTR 0.41 TCGA-F5-6814-01 10 75005715 75005715 C T DNAJC9 Missense_Mutation p.E181K 0.37 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 10 75009015 75009015 C A MRPS16 3'UTR 0.35 TCGA-F5-6814-01 10 75011736 75011736 C T MRPS16 Missense_Mutation p.R20H 0.32 deleterious(0.02) benign(0.064) TCGA-F5-6814-01 10 75051461 75051461 C A TTC18 Nonsense_Mutation p.E723* 0.17 TCGA-F5-6814-01 10 75058830 75058830 C A TTC18 Missense_Mutation p.K519N 0.08 tolerated(0.39) possibly_damaging(0.801) TCGA-F5-6814-01 10 75090945 75090945 T G TTC18 Missense_Mutation p.K326T 0.29 deleterious(0) possibly_damaging(0.603) TCGA-F5-6814-01 10 75108238 75108238 C A TTC18 Nonsense_Mutation p.E98* 0.19 TCGA-F5-6814-01 10 75184880 75184880 A C MSS51 Missense_Mutation p.I380S 0.14 deleterious(0) benign(0.273) TCGA-F5-6814-01 10 75204412 75204412 T C PPP3CB Intron 0.51 TCGA-F5-6814-01 10 75206290 75206290 G A PPP3CB Nonsense_Mutation p.R411* 0.37 TCGA-F5-6814-01 10 75277036 75277036 C A USP54 Nonsense_Mutation p.E1050* 0.29 TCGA-F5-6814-01 10 75289528 75289528 C T USP54 Missense_Mutation p.R657Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 10 75548550 75548550 T C ZSWIM8 Missense_Mutation p.W111R 0.18 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 10 75567902 75567902 C T NDST2 Missense_Mutation p.R82Q 0.28 deleterious(0) possibly_damaging(0.532) TCGA-F5-6814-01 10 75576798 75576798 T G CAMK2G Missense_Mutation p.K474T 0.27 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-F5-6814-01 10 76602655 76602655 C A KAT6B Missense_Mutation p.L14I 0.28 possibly_damaging(0.84) TCGA-F5-6814-01 10 76784752 76784752 C T KAT6B Missense_Mutation p.R1137C 0.29 probably_damaging(0.982) TCGA-F5-6814-01 10 76784792 76784792 C A KAT6B Nonsense_Mutation p.S1150* 0.32 TCGA-F5-6814-01 10 76855425 76855425 C T DUSP13 Missense_Mutation p.G151D 0.31 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 10 76936482 76936482 T C SAMD8 3'UTR 0.31 TCGA-F5-6814-01 10 77312218 77312218 T C MIR606 RNA 0.33 TCGA-F5-6814-01 10 77312286 77312286 A C MIR606 RNA 0.32 TCGA-F5-6814-01 10 7762890 7762890 C T ITIH2 Silent p.F234F 0.22 TCGA-F5-6814-01 10 7762898 7762898 T G ITIH2 Missense_Mutation p.V237G 0.25 tolerated(0.07) benign(0.003) TCGA-F5-6814-01 10 7801947 7801947 C A KIN Missense_Mutation p.R342I 0.62 tolerated(0.19) benign(0) TCGA-F5-6814-01 10 7820918 7820918 T G KIN Missense_Mutation p.E147D 0.38 tolerated(0.06) benign(0.11) TCGA-F5-6814-01 10 78669749 78669749 C T KCNMA1 Missense_Mutation p.S1024N 0.18 tolerated(0.13) probably_damaging(0.994) TCGA-F5-6814-01 10 78799360 78799360 T G KCNMA1 Missense_Mutation p.E595D 0.15 tolerated(0.37) benign(0.076) TCGA-F5-6814-01 10 79814326 79814326 G T RPS24 Missense_Mutation p.R143I 0.40 deleterious_low_confidence(0) benign(0) TCGA-F5-6814-01 10 8006292 8006292 G T TAF3 Missense_Mutation p.K273N 0.16 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 10 8007661 8007661 C T TAF3 Nonsense_Mutation p.R730* 0.39 TCGA-F5-6814-01 10 81050890 81050890 T C ZMIZ1 Missense_Mutation p.Y239H 0.19 probably_damaging(0.997) TCGA-F5-6814-01 10 81113688 81113688 G A PPIF 3'UTR 0.38 TCGA-F5-6814-01 10 8116040 8116040 G A GATA3 3'UTR 0.36 TCGA-F5-6814-01 10 81192458 81192458 G A ZCCHC24 Silent p.I101I 0.39 TCGA-F5-6814-01 10 81274336 81274336 A T EIF5AL1 3'UTR 0.13 TCGA-F5-6814-01 10 81374885 81374885 G T SFTPA1 3'Flank 0.20 TCGA-F5-6814-01 10 82036137 82036137 G A MAT1A Missense_Mutation p.P255S 0.47 deleterious(0.01) possibly_damaging(0.587) TCGA-F5-6814-01 10 82102030 82102030 C A DYDC1 Missense_Mutation p.G113C 0.12 deleterious(0.04) benign(0.158) TCGA-F5-6814-01 10 82126643 82126643 A G DYDC2 Missense_Mutation p.Y171C 0.18 deleterious(0.03) possibly_damaging(0.723) TCGA-F5-6814-01 10 82191773 82191773 T G FAM213A Missense_Mutation p.F203C 0.29 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 10 82280372 82280372 A G TSPAN14 3'UTR 0.12 TCGA-F5-6814-01 10 83635919 83635919 C T NRG3 Missense_Mutation p.H275Y 0.30 tolerated(0.17) possibly_damaging(0.683) TCGA-F5-6814-01 10 84118499 84118499 G A NRG3 Silent p.T276T 0.09 TCGA-F5-6814-01 10 84625189 84625189 C A NRG3 Missense_Mutation p.F350L 0.31 deleterious(0.02) probably_damaging(0.984) TCGA-F5-6814-01 10 858860 858860 C T LARP4B 3'UTR 0.25 TCGA-F5-6814-01 10 85984621 85984621 C A LRIT2 Missense_Mutation p.W120C 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 86014124 86014124 C T RGR Silent p.F189F 0.42 TCGA-F5-6814-01 10 86130917 86130917 A C CCSER2 Missense_Mutation p.N37H 0.29 tolerated(0.29) possibly_damaging(0.724) TCGA-F5-6814-01 10 86131046 86131046 G A CCSER2 Missense_Mutation p.E80K 0.40 tolerated(0.37) benign(0.14) TCGA-F5-6814-01 10 86177532 86177532 T G CCSER2 Missense_Mutation p.I540M 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 10 86237371 86237371 A C CCSER2 Missense_Mutation p.K759T 0.09 tolerated(0.15) possibly_damaging(0.736) TCGA-F5-6814-01 10 87362369 87362369 C T GRID1 Silent p.S897S 0.40 TCGA-F5-6814-01 10 87675995 87675995 G C GRID1 Missense_Mutation p.A243G 0.36 deleterious(0) possibly_damaging(0.842) TCGA-F5-6814-01 10 87898736 87898736 C T GRID1 Missense_Mutation p.G189D 0.12 tolerated(0.06) probably_damaging(1) TCGA-F5-6814-01 10 88197698 88197698 A C WAPAL Missense_Mutation p.F1162L 0.30 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 10 88206011 88206011 C A WAPAL Missense_Mutation p.D1104Y 0.24 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 10 88257017 88257017 T G WAPAL Missense_Mutation p.N529H 0.34 deleterious(0.05) benign(0.401) TCGA-F5-6814-01 10 88635844 88635844 T C BMPR1A Splice_Site p.X23_splice 0.31 TCGA-F5-6814-01 10 88677003 88677003 T G BMPR1A Missense_Mutation p.F263C 0.07 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 10 88677032 88677032 C T BMPR1A Nonsense_Mutation p.R273* 0.46 TCGA-F5-6814-01 10 88729862 88729862 G A ADIRF Intron 0.39 TCGA-F5-6814-01 10 88768420 88768420 G T RP11-96C23.10 3'Flank 0.20 TCGA-F5-6814-01 10 88811420 88811420 A C GLUD1 3'UTR 0.25 TCGA-F5-6814-01 10 89624245 89624245 G T PTEN Nonsense_Mutation p.E7* 0.35 TCGA-F5-6814-01 10 89720744 89720744 G T PTEN Nonsense_Mutation p.E299* 0.32 TCGA-F5-6814-01 10 90356141 90356141 A T LIPJ Nonsense_Mutation p.R182* 0.41 TCGA-F5-6814-01 10 90431589 90431589 T G LIPF Missense_Mutation p.F189C 0.11 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 10 90491952 90491952 A C LIPK Missense_Mutation p.K147T 0.20 deleterious(0.01) possibly_damaging(0.755) TCGA-F5-6814-01 10 90577592 90577592 C A LIPM Missense_Mutation p.S314Y 0.42 deleterious(0.04) benign(0.17) TCGA-F5-6814-01 10 90670711 90670711 G T STAMBPL1 Missense_Mutation p.L121F 0.25 deleterious(0.01) benign(0.13) TCGA-F5-6814-01 10 90773948 90773948 G A FAS Missense_Mutation p.R250Q 0.47 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 10 90983449 90983449 A C LIPA Missense_Mutation p.L272V 0.09 deleterious(0.02) possibly_damaging(0.86) TCGA-F5-6814-01 10 91066898 91066898 T G IFIT2 Missense_Mutation p.F395L 0.36 tolerated(0.12) benign(0.437) TCGA-F5-6814-01 10 91098578 91098578 T G IFIT3 Missense_Mutation p.L56V 0.17 deleterious(0) probably_damaging(0.942) TCGA-F5-6814-01 10 91137814 91137814 G T IFIT1B 5'UTR 0.32 TCGA-F5-6814-01 10 91190515 91190515 A C SLC16A12 3'UTR 0.50 TCGA-F5-6814-01 10 91192894 91192894 G T SLC16A12 Missense_Mutation p.S493Y 0.10 tolerated_low_confidence(0.11) probably_damaging(0.994) TCGA-F5-6814-01 10 91344123 91344123 C A PANK1 3'UTR 0.36 TCGA-F5-6814-01 10 91479457 91479457 G A KIF20B Silent p.E572E 0.30 TCGA-F5-6814-01 10 91483695 91483695 A C KIF20B Intron 0.39 TCGA-F5-6814-01 10 91483696 91483696 G A KIF20B Intron 0.32 TCGA-F5-6814-01 10 91497726 91497726 G A KIF20B Missense_Mutation p.R1003Q 0.35 tolerated(0.61) benign(0.004) TCGA-F5-6814-01 10 92616922 92616922 C T HTR7 Silent p.S169S 0.21 TCGA-F5-6814-01 10 92634636 92634636 A C RPP30 Silent p.S31S 0.07 TCGA-F5-6814-01 10 93185064 93185064 A C HECTD2 Missense_Mutation p.Q55H 0.33 tolerated_low_confidence(0.08) possibly_damaging(0.73) TCGA-F5-6814-01 10 93185151 93185151 C T HECTD2 Silent p.F84F 0.20 TCGA-F5-6814-01 10 93220255 93220255 G A HECTD2 Missense_Mutation p.E114K 0.38 tolerated(0.09) possibly_damaging(0.794) TCGA-F5-6814-01 10 93256040 93256040 T G HECTD2 Missense_Mutation p.L531V 0.11 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 10 93390430 93390430 A G PPP1R3C Missense_Mutation p.S70P 0.14 tolerated(0.23) benign(0.002) TCGA-F5-6814-01 10 93615386 93615386 C T TNKS2 Nonsense_Mutation p.R977* 0.44 TCGA-F5-6814-01 10 93683794 93683794 G A BTAF1 5'UTR 0.44 TCGA-F5-6814-01 10 93713556 93713556 G T BTAF1 Missense_Mutation p.K209N 0.39 tolerated(0.4) benign(0.09) TCGA-F5-6814-01 10 93740254 93740254 G A BTAF1 Missense_Mutation p.R565Q 0.12 deleterious(0) possibly_damaging(0.791) TCGA-F5-6814-01 10 93742431 93742431 G A BTAF1 Silent p.Q712Q 0.23 TCGA-F5-6814-01 10 93753601 93753601 T G BTAF1 Missense_Mutation p.F1066V 0.16 tolerated(0.54) benign(0.001) TCGA-F5-6814-01 10 93786382 93786382 A G BTAF1 Silent p.L1703L 0.11 TCGA-F5-6814-01 10 94452247 94452247 C A HHEX Missense_Mutation p.L162I 0.33 deleterious(0) possibly_damaging(0.867) TCGA-F5-6814-01 10 94757273 94757273 C A EXOC6 Missense_Mutation p.L666M 0.35 tolerated(0.08) possibly_damaging(0.85) TCGA-F5-6814-01 10 95072905 95072905 A C MYOF Missense_Mutation p.L1921V 0.34 deleterious(0.03) benign(0.303) TCGA-F5-6814-01 10 95089554 95089554 C A MYOF Missense_Mutation p.D1617Y 0.48 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 10 95134685 95134685 T G MYOF Missense_Mutation p.K712N 0.37 tolerated(0.17) benign(0.008) TCGA-F5-6814-01 10 95276751 95276751 G T CEP55 Missense_Mutation p.D247Y 0.32 deleterious(0) possibly_damaging(0.879) TCGA-F5-6814-01 10 95276826 95276826 A G CEP55 Missense_Mutation p.T272A 0.35 tolerated(0.4) benign(0.001) TCGA-F5-6814-01 10 95372879 95372879 G T PDE6C Nonsense_Mutation p.E133* 0.28 TCGA-F5-6814-01 10 95394630 95394630 A C PDE6C Missense_Mutation p.K412T 0.39 tolerated(0.1) probably_damaging(0.967) TCGA-F5-6814-01 10 95429588 95429588 G T FRA10AC1 Missense_Mutation p.L315I 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 10 95556959 95556959 C T LGI1 Missense_Mutation p.T358I 0.17 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 10 95660778 95660778 A G SLC35G1 Missense_Mutation p.D210G 0.12 tolerated(0.27) benign(0.001) TCGA-F5-6814-01 10 95790668 95790668 G T PLCE1 5'UTR 0.21 TCGA-F5-6814-01 10 95791484 95791484 G T PLCE1 Missense_Mutation p.K227N 0.27 tolerated_low_confidence(0.18) benign(0.002) TCGA-F5-6814-01 10 96068358 96068358 C T PLCE1 Nonsense_Mutation p.R1969* 0.22 TCGA-F5-6814-01 10 96109903 96109903 C T NOC3L Silent p.L365L 0.09 TCGA-F5-6814-01 10 96292887 96292887 A C TBC1D12 3'UTR 0.33 TCGA-F5-6814-01 10 96480167 96480167 A C CYP2C18 Missense_Mutation p.Q278H 0.24 tolerated(0.06) benign(0.008) TCGA-F5-6814-01 10 96493102 96493102 G T CYP2C18 Nonsense_Mutation p.E400* 0.38 TCGA-F5-6814-01 10 96805608 96805608 C T CYP2C8 Missense_Mutation p.R307K 0.20 tolerated(0.12) benign(0.398) TCGA-F5-6814-01 10 96827305 96827305 T C CYP2C8 Silent p.Q104Q 0.21 TCGA-F5-6814-01 10 96827403 96827403 T A CYP2C8 Missense_Mutation p.N72Y 0.09 deleterious(0) benign(0.307) TCGA-F5-6814-01 10 97078173 97078173 A C SORBS1 Missense_Mutation p.L1239V 0.16 tolerated(0.12) probably_damaging(0.997) TCGA-F5-6814-01 10 97117552 97117552 G T SORBS1 Missense_Mutation p.S655Y 0.22 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-F5-6814-01 10 97440258 97440258 G A TCTN3 Nonsense_Mutation p.R521* 0.46 TCGA-F5-6814-01 10 97697761 97697761 G A C10orf131 Missense_Mutation p.R109H 0.35 tolerated(0.16) benign(0) TCGA-F5-6814-01 10 97791636 97791636 T G CC2D2B Silent p.V359V 0.41 TCGA-F5-6814-01 10 97792351 97792351 C T CC2D2B 3'Flank 0.38 TCGA-F5-6814-01 10 97916286 97916286 A G ZNF518A RNA 0.37 TCGA-F5-6814-01 10 97916558 97916558 A C ZNF518A RNA 0.16 TCGA-F5-6814-01 10 97919395 97919395 T G ZNF518A RNA 0.09 TCGA-F5-6814-01 10 98082469 98082469 G A DNTT Missense_Mutation p.R245Q 0.31 deleterious(0.05) benign(0.037) TCGA-F5-6814-01 10 98092269 98092269 G T DNTT Missense_Mutation p.K425N 0.15 deleterious(0.02) probably_damaging(0.922) TCGA-F5-6814-01 10 98127765 98127765 G A TLL2 3'UTR 0.50 TCGA-F5-6814-01 10 98287798 98287798 C A TM9SF3 Missense_Mutation p.D511Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 10 98469402 98469402 A C PIK3AP1 Missense_Mutation p.W118G 0.31 tolerated(0.1) benign(0.19) TCGA-F5-6814-01 10 98742644 98742644 C A C10orf12 Missense_Mutation p.F499L 0.19 tolerated(0.51) benign(0.009) TCGA-F5-6814-01 10 99081636 99081636 C A FRAT1 3'UTR 0.45 TCGA-F5-6814-01 10 99222438 99222438 C A MMS19 Missense_Mutation p.E638D 0.11 tolerated(0.48) benign(0) TCGA-F5-6814-01 10 99640121 99640121 G A CRTAC1 Silent p.F568F 0.41 TCGA-F5-6814-01 10 99968129 99968129 G T R3HCC1L Missense_Mutation p.K86N 0.23 deleterious(0) possibly_damaging(0.705) TCGA-F5-6814-01 10 99968510 99968510 T C R3HCC1L Silent p.V213V 0.11 TCGA-F5-6814-01 11 100226888 100226888 C A CNTN5 Silent p.L1080L 0.30 TCGA-F5-6814-01 11 10050094 10050094 G T SBF2 Missense_Mutation p.S175Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 11 100784278 100784278 A G ARHGAP42 Silent p.L160L 0.15 TCGA-F5-6814-01 11 100863219 100863219 G T TMEM133 Missense_Mutation p.K60N 0.19 tolerated_low_confidence(0.11) benign(0) TCGA-F5-6814-01 11 100909739 100909739 A C PGR 3'UTR 0.33 TCGA-F5-6814-01 11 101323728 101323728 C A TRPC6 Missense_Mutation p.E918D 0.34 tolerated(0.39) probably_damaging(0.986) TCGA-F5-6814-01 11 101765770 101765770 C A ANGPTL5 Missense_Mutation p.K229N 0.12 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 11 1017735 1017735 T G MUC6 Missense_Mutation p.K1689T 0.11 unknown(0) TCGA-F5-6814-01 11 101793446 101793446 G A KIAA1377 Missense_Mutation p.R68Q 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 101793482 101793482 G T KIAA1377 Missense_Mutation p.R80L 0.24 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 101946806 101946806 C A C11orf70 Intron 0.40 TCGA-F5-6814-01 11 102195841 102195841 G T BIRC3 Missense_Mutation p.D201Y 0.30 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 102239236 102239236 A C BIRC2 Missense_Mutation p.K441N 0.43 tolerated(0.49) benign(0.002) TCGA-F5-6814-01 11 102465460 102465460 G A MMP20 Missense_Mutation p.R328W 0.17 deleterious(0.01) benign(0.316) TCGA-F5-6814-01 11 102563666 102563666 T C MMP27 Intron 0.41 TCGA-F5-6814-01 11 102585405 102585405 G T MMP8 Missense_Mutation p.L358M 0.08 tolerated(0.09) benign(0.011) TCGA-F5-6814-01 11 102661441 102661441 C A MMP1 Missense_Mutation p.M431I 0.38 deleterious(0.02) benign(0) TCGA-F5-6814-01 11 102706888 102706888 G A MMP3 Missense_Mutation p.T468I 0.35 tolerated(0.95) benign(0.001) TCGA-F5-6814-01 11 102709387 102709387 C T MMP3 Missense_Mutation p.G375D 0.39 tolerated(1) benign(0.004) TCGA-F5-6814-01 11 1028011 1028011 A G MUC6 Missense_Mutation p.V601A 0.19 unknown(0) TCGA-F5-6814-01 11 102822868 102822868 G A MMP13 Silent p.F224F 0.11 TCGA-F5-6814-01 11 102826058 102826058 T G MMP13 Missense_Mutation p.R95S 0.10 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 11 1028889 1028889 G A MUC6 Missense_Mutation p.R485C 0.41 unknown(0) TCGA-F5-6814-01 11 102962576 102962576 G A DCUN1D5 Missense_Mutation p.S9F 0.49 deleterious(0.03) benign(0.092) TCGA-F5-6814-01 11 102980284 102980284 T C DYNC2H1 5'Flank 0.21 TCGA-F5-6814-01 11 102984917 102984917 G T DYNC2H1 Missense_Mutation p.R151I 0.30 benign(0.006) TCGA-F5-6814-01 11 103004402 103004402 A C DYNC2H1 Missense_Mutation p.K691T 0.08 benign(0.015) TCGA-F5-6814-01 11 103029471 103029471 G T DYNC2H1 Missense_Mutation p.R1398I 0.34 benign(0.381) TCGA-F5-6814-01 11 103036672 103036672 A C DYNC2H1 Missense_Mutation p.N1553H 0.21 benign(0.007) TCGA-F5-6814-01 11 103039683 103039683 A G DYNC2H1 Silent p.E1654E 0.38 TCGA-F5-6814-01 11 103041684 103041684 G T DYNC2H1 Missense_Mutation p.D1741Y 0.41 probably_damaging(1) TCGA-F5-6814-01 11 103058218 103058219 - A DYNC2H1 Frame_Shift_Ins p.D2350Rfs*3 0.26 TCGA-F5-6814-01 11 103062252 103062252 G A DYNC2H1 Missense_Mutation p.A2482T 0.09 benign(0.002) TCGA-F5-6814-01 11 103068689 103068689 G A DYNC2H1 Missense_Mutation p.R2579Q 0.36 benign(0.001) TCGA-F5-6814-01 11 103069986 103069986 G T DYNC2H1 Missense_Mutation p.Q2623H 0.28 benign(0.003) TCGA-F5-6814-01 11 103090720 103090720 G T DYNC2H1 Missense_Mutation p.R2970I 0.21 probably_damaging(0.997) TCGA-F5-6814-01 11 103092879 103092879 A G DYNC2H1 Silent p.P3076P 0.19 TCGA-F5-6814-01 11 103194634 103194634 G T DYNC2H1 Missense_Mutation p.E3992D 0.39 benign(0.007) TCGA-F5-6814-01 11 103325960 103325960 T G DYNC2H1 Missense_Mutation p.L4175R 0.13 possibly_damaging(0.878) TCGA-F5-6814-01 11 103866800 103866800 G T PDGFD Missense_Mutation p.S168Y 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-F5-6814-01 11 103907752 103907752 G T DDI1 Missense_Mutation p.D68Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 11 103908137 103908137 A C DDI1 Missense_Mutation p.E196A 0.36 tolerated(0.06) possibly_damaging(0.841) TCGA-F5-6814-01 11 103908633 103908633 T C DDI1 Silent p.L361L 0.37 TCGA-F5-6814-01 11 103909206 103909206 C A DDI1 3'UTR 0.10 TCGA-F5-6814-01 11 103909462 103909462 A G DDI1 3'UTR 0.12 TCGA-F5-6814-01 11 103909471 103909471 A C DDI1 3'UTR 0.12 TCGA-F5-6814-01 11 104822724 104822724 T C CASP4 Missense_Mutation p.N91D 0.13 tolerated(0.71) benign(0.001) TCGA-F5-6814-01 11 104897080 104897080 G A CASP1 Nonsense_Mutation p.R374* 0.30 TCGA-F5-6814-01 11 104900563 104900563 A G CASP1 Missense_Mutation p.F231L 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 10527315 10527315 C T AMPD3 Nonsense_Mutation p.R739* 0.42 TCGA-F5-6814-01 11 105924639 105924639 C A KBTBD3 Missense_Mutation p.E259D 0.15 tolerated(0.32) benign(0.001) TCGA-F5-6814-01 11 106558463 106558463 T G GUCY1A2 Missense_Mutation p.S702R 0.44 deleterious(0.02) benign(0.243) TCGA-F5-6814-01 11 106647265 106647265 T G GUCY1A2 Missense_Mutation p.H579P 0.36 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 11 106680838 106680838 A G GUCY1A2 Missense_Mutation p.S525P 0.15 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 107423922 107423922 T G ALKBH8 Missense_Mutation p.K169N 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-F5-6814-01 11 107501177 107501177 A G ELMOD1 Missense_Mutation p.K18E 0.20 tolerated(0.46) benign(0.05) TCGA-F5-6814-01 11 10776547 10776547 T G CTR9 Missense_Mutation p.L63V 0.25 tolerated(0.38) benign(0.043) TCGA-F5-6814-01 11 107832799 107832799 C T RAB39A Missense_Mutation p.R119W 0.34 deleterious(0.02) possibly_damaging(0.773) TCGA-F5-6814-01 11 10794765 10794765 T G CTR9 Missense_Mutation p.F891C 0.10 deleterious(0) possibly_damaging(0.669) TCGA-F5-6814-01 11 108115600 108115600 C T ATM Nonsense_Mutation p.R250* 0.17 TCGA-F5-6814-01 11 108159816 108159816 C A ATM Missense_Mutation p.L1408I 0.20 deleterious(0) possibly_damaging(0.792) TCGA-F5-6814-01 11 10820813 10820813 A G EIF4G2 Missense_Mutation p.V828A 0.10 deleterious(0.05) probably_damaging(0.999) TCGA-F5-6814-01 11 108350040 108350040 A T KDELC2 Silent p.V427V 0.30 TCGA-F5-6814-01 11 108351957 108351957 C A KDELC2 Nonsense_Mutation p.E350* 0.32 TCGA-F5-6814-01 11 108380717 108380717 G A EXPH5 Silent p.F1839F 0.26 TCGA-F5-6814-01 11 108382012 108382012 C A EXPH5 Nonsense_Mutation p.E1408* 0.36 TCGA-F5-6814-01 11 108385274 108385274 C T EXPH5 Silent p.S320S 0.08 TCGA-F5-6814-01 11 108593776 108593776 A G DDX10 Missense_Mutation p.K518E 0.17 deleterious(0.01) benign(0.097) TCGA-F5-6814-01 11 108709178 108709178 A C DDX10 Missense_Mutation p.K657N 0.16 tolerated(0.22) benign(0.004) TCGA-F5-6814-01 11 108712100 108712100 A G DDX10 Missense_Mutation p.D715G 0.10 tolerated(0.1) possibly_damaging(0.798) TCGA-F5-6814-01 11 10874877 10874877 G T ZBED5 Missense_Mutation p.S539Y 0.26 tolerated(1) benign(0.003) TCGA-F5-6814-01 11 110034061 110034061 G T ZC3H12C Missense_Mutation p.K404N 0.43 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 11 110150412 110150412 C T RDX Silent p.P2P 0.29 TCGA-F5-6814-01 11 110451546 110451546 G A ARHGAP20 Silent p.I708I 0.18 TCGA-F5-6814-01 11 110461504 110461504 T C ARHGAP20 Silent p.G391G 0.29 TCGA-F5-6814-01 11 111166909 111166909 C T COLCA1 Missense_Mutation p.D99N 0.24 benign(0) TCGA-F5-6814-01 11 111168416 111168416 C T COLCA1 5'UTR 0.39 TCGA-F5-6814-01 11 111169049 111169049 A G COLCA1 5'UTR 0.40 TCGA-F5-6814-01 11 111177175 111177175 G T COLCA2 5'UTR 0.60 TCGA-F5-6814-01 11 111228403 111228403 A G POU2AF1 Missense_Mutation p.S75P 0.12 tolerated(0.33) benign(0.032) TCGA-F5-6814-01 11 111338402 111338402 A C BTG4 Missense_Mutation p.L223V 0.40 deleterious_low_confidence(0) benign(0.02) TCGA-F5-6814-01 11 111414693 111414693 T G LAYN Missense_Mutation p.V52G 0.16 deleterious(0) possibly_damaging(0.89) TCGA-F5-6814-01 11 111414901 111414901 C G LAYN Missense_Mutation p.C121W 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 111486976 111486976 A C SIK2 Missense_Mutation p.K49Q 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 11 111491117 111491117 G T SIK2 Nonsense_Mutation p.E103* 0.31 TCGA-F5-6814-01 11 111618727 111618727 G T PPP2R1B Missense_Mutation p.F450L 0.23 deleterious(0.03) benign(0.017) TCGA-F5-6814-01 11 111739344 111739344 C A ALG9 5'UTR 0.20 TCGA-F5-6814-01 11 111739395 111739395 C T ALG9 5'UTR 0.48 TCGA-F5-6814-01 11 111753230 111753230 A C C11orf1 Missense_Mutation p.N62H 0.24 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 11 111795074 111795074 G T C11orf52 Missense_Mutation p.K19N 0.32 tolerated(0.13) benign(0.013) TCGA-F5-6814-01 11 111896471 111896471 A C DLAT Missense_Mutation p.Q92P 0.39 tolerated(0.21) probably_damaging(0.93) TCGA-F5-6814-01 11 111899273 111899273 G A DLAT Missense_Mutation p.S139N 0.29 deleterious(0.02) possibly_damaging(0.794) TCGA-F5-6814-01 11 111909974 111909974 G A DLAT Missense_Mutation p.A328T 0.46 tolerated(0.49) benign(0.002) TCGA-F5-6814-01 11 111958593 111958593 G A SDHD Missense_Mutation p.R22Q 0.44 tolerated(0.63) benign(0.002) TCGA-F5-6814-01 11 112039986 112039986 C T TEX12 5'UTR 0.22 TCGA-F5-6814-01 11 112042720 112042720 C T TEX12 3'UTR 0.55 TCGA-F5-6814-01 11 112046399 112046399 G A BCO2 Silent p.V25V 0.40 TCGA-F5-6814-01 11 112119593 112119593 C A PLET1 Missense_Mutation p.V185F 0.37 deleterious(0.02) possibly_damaging(0.904) TCGA-F5-6814-01 11 113102999 113102999 C T NCAM1 Missense_Mutation p.R499W 0.19 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 113126650 113126650 C A NCAM1 Missense_Mutation p.S676Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 11 11314580 11314580 G A GALNT18 Missense_Mutation p.S558F 0.26 deleterious(0.01) benign(0.199) TCGA-F5-6814-01 11 113212643 113212643 G A TTC12 Silent p.R327R 0.47 TCGA-F5-6814-01 11 113235659 113235659 C A TTC12 Missense_Mutation p.S640Y 0.13 deleterious(0) possibly_damaging(0.563) TCGA-F5-6814-01 11 113560559 113560559 G A TMPRSS5 Silent p.C429C 0.50 TCGA-F5-6814-01 11 113614749 113614749 G T ZW10 Missense_Mutation p.S429Y 0.36 tolerated(0.36) benign(0.007) TCGA-F5-6814-01 11 113661497 113661497 G A ATF4P4 RNA 0.25 TCGA-F5-6814-01 11 113669902 113669902 G A USP28 3'UTR 0.22 TCGA-F5-6814-01 11 113705033 113705033 G A USP28 Nonsense_Mutation p.R187* 0.44 TCGA-F5-6814-01 11 11374266 11374266 C T CSNK2A3 Missense_Mutation p.R134Q 0.15 tolerated(0.08) probably_damaging(0.998) TCGA-F5-6814-01 11 114278384 114278384 A G RBM7 Missense_Mutation p.Y219C 0.33 deleterious(0.02) possibly_damaging(0.759) TCGA-F5-6814-01 11 1162199 1162199 C A MUC5AC Missense_Mutation p.L570I 0.50 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 11 116656573 116656573 C A ZNF259 Missense_Mutation p.R174I 0.16 deleterious(0) benign(0.345) TCGA-F5-6814-01 11 116661380 116661380 C A APOA5 Nonsense_Mutation p.E189* 0.50 TCGA-F5-6814-01 11 116691694 116691694 C A APOA4 Missense_Mutation p.E360D 0.33 tolerated(0.1) possibly_damaging(0.466) TCGA-F5-6814-01 11 116729001 116729001 C A SIK3 Missense_Mutation p.Q954H 0.12 deleterious_low_confidence(0.01) benign(0.005) TCGA-F5-6814-01 11 117266344 117266344 G T CEP164 Nonsense_Mutation p.E999* 0.58 TCGA-F5-6814-01 11 117869578 117869578 G A IL10RA Missense_Mutation p.G320D 0.39 deleterious(0.03) possibly_damaging(0.697) TCGA-F5-6814-01 11 118047103 118047103 G A SCN2B Missense_Mutation p.T15M 0.33 tolerated(0.13) benign(0.009) TCGA-F5-6814-01 11 118068748 118068748 C A AMICA1 Nonsense_Mutation p.E324* 0.38 TCGA-F5-6814-01 11 118074145 118074145 C T AMICA1 Missense_Mutation p.R257Q 0.38 tolerated(0.52) benign(0.025) TCGA-F5-6814-01 11 118178020 118178020 G T CD3E Missense_Mutation p.D23Y 0.44 deleterious(0) possibly_damaging(0.784) TCGA-F5-6814-01 11 118244265 118244265 G T UBE4A Missense_Mutation p.K334N 0.29 tolerated(0.27) benign(0.013) TCGA-F5-6814-01 11 118245674 118245674 G T UBE4A Nonsense_Mutation p.E401* 0.22 TCGA-F5-6814-01 11 118423040 118423040 T G IFT46 Missense_Mutation p.K216T 0.21 tolerated(0.37) benign(0.122) TCGA-F5-6814-01 11 118425256 118425256 A G IFT46 Missense_Mutation p.L185S 0.29 deleterious(0) possibly_damaging(0.871) TCGA-F5-6814-01 11 118468455 118468455 C T ARCN1 Silent p.I425I 0.23 TCGA-F5-6814-01 11 118530643 118530643 A C TREH Missense_Mutation p.I378S 0.38 tolerated(0.62) benign(0) TCGA-F5-6814-01 11 118925996 118925996 T C HYOU1 Missense_Mutation p.Q107R 0.38 tolerated(0.46) benign(0.002) TCGA-F5-6814-01 11 118986761 118986761 T A C2CD2L Missense_Mutation p.F640Y 0.21 deleterious(0.03) probably_damaging(0.979) TCGA-F5-6814-01 11 119020789 119020789 G T ABCG4 Missense_Mutation p.K38N 0.44 tolerated(0.13) benign(0.013) TCGA-F5-6814-01 11 119027692 119027692 G A ABCG4 Missense_Mutation p.E346K 0.39 tolerated(0.36) benign(0.003) TCGA-F5-6814-01 11 119042177 119042177 G A NLRX1 Missense_Mutation p.R22Q 0.33 tolerated_low_confidence(0.45) benign(0) TCGA-F5-6814-01 11 119059352 119059352 C T PDZD3 Missense_Mutation p.R355C 0.28 tolerated(0.1) benign(0.073) TCGA-F5-6814-01 11 119077317 119077317 G A CBL Missense_Mutation p.D64N 0.25 deleterious(0.02) possibly_damaging(0.699) TCGA-F5-6814-01 11 11913582 11913582 C A USP47 Missense_Mutation p.S74Y 0.50 tolerated_low_confidence(0.09) possibly_damaging(0.526) TCGA-F5-6814-01 11 119170451 119170451 A G CBL Missense_Mutation p.E894G 0.46 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-F5-6814-01 11 119205973 119205973 G A RNF26 Silent p.P47P 0.18 TCGA-F5-6814-01 11 119228292 119228292 G A USP2 Missense_Mutation p.R504W 0.24 deleterious(0) probably_damaging(0.964) TCGA-F5-6814-01 11 11941739 11941739 C A USP47 Missense_Mutation p.L268M 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 11977657 11977657 C T USP47 Missense_Mutation p.R1267C 0.08 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 120278493 120278493 A G ARHGEF12 Missense_Mutation p.K35E 0.18 deleterious(0) possibly_damaging(0.858) TCGA-F5-6814-01 11 120319002 120319002 A G ARHGEF12 Missense_Mutation p.E561G 0.12 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 11 120957781 120957781 T G TBCEL Missense_Mutation p.I417M 0.27 deleterious(0) possibly_damaging(0.528) TCGA-F5-6814-01 11 121061424 121061424 C A TECTA Missense_Mutation p.S2126Y 0.36 deleterious_low_confidence(0.05) benign(0.365) TCGA-F5-6814-01 11 121348865 121348865 A C SORL1 Missense_Mutation p.K147N 0.43 tolerated(0.29) benign(0.001) TCGA-F5-6814-01 11 121414377 121414377 G A SORL1 Silent p.S602S 0.48 TCGA-F5-6814-01 11 12247832 12247832 T C MICAL2 Silent p.S601S 0.09 TCGA-F5-6814-01 11 122678786 122678786 C A UBASH3B Missense_Mutation p.L572M 0.09 deleterious(0.03) probably_damaging(1) TCGA-F5-6814-01 11 122680561 122680561 C T UBASH3B Silent p.G639G 0.22 TCGA-F5-6814-01 11 122738179 122738179 G A CRTAM Missense_Mutation p.V294M 0.27 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 122742077 122742077 G T CRTAM Missense_Mutation p.K384N 0.09 tolerated(0.13) benign(0.118) TCGA-F5-6814-01 11 122775092 122775092 G A C11orf63 Silent p.P268P 0.11 TCGA-F5-6814-01 11 122830044 122830044 C T C11orf63 Missense_Mutation p.A743V 0.40 tolerated(0.17) benign(0.015) TCGA-F5-6814-01 11 122944419 122944419 C T CLMP Silent p.R295R 0.12 TCGA-F5-6814-01 11 123471189 123471189 C T GRAMD1B Missense_Mutation p.S185L 0.29 deleterious(0) possibly_damaging(0.536) TCGA-F5-6814-01 11 123483529 123483529 G T GRAMD1B Missense_Mutation p.E517D 0.10 deleterious(0.02) benign(0.365) TCGA-F5-6814-01 11 123676299 123676299 G T OR6M1 Silent p.I253I 0.27 TCGA-F5-6814-01 11 123676707 123676707 G T OR6M1 Silent p.S117S 0.35 TCGA-F5-6814-01 11 123676925 123676925 A G OR6M1 Missense_Mutation p.S45P 0.26 tolerated(0.2) benign(0.212) TCGA-F5-6814-01 11 123777694 123777694 A C OR8D4 Missense_Mutation p.K186Q 0.12 tolerated(0.62) benign(0.04) TCGA-F5-6814-01 11 123810688 123810688 G A OR4D5 Missense_Mutation p.R122H 0.44 deleterious(0.01) possibly_damaging(0.72) TCGA-F5-6814-01 11 124189333 124189333 G A OR8D2 Missense_Mutation p.S254F 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 124294453 124294453 G T OR8B4 Missense_Mutation p.F105L 0.20 deleterious_low_confidence(0.02) benign(0.002) TCGA-F5-6814-01 11 124412690 124412690 T G OR8B12 Missense_Mutation p.L287F 0.17 tolerated_low_confidence(0.19) benign(0.047) TCGA-F5-6814-01 11 124440765 124440765 C A OR8A1 Missense_Mutation p.F267L 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 11 124623513 124623513 A C ESAM 3'UTR 0.43 TCGA-F5-6814-01 11 124626481 124626481 T G ESAM Missense_Mutation p.K136T 0.23 tolerated(0.92) benign(0.002) TCGA-F5-6814-01 11 124761454 124761454 G T ROBO4 Silent p.L563L 0.32 TCGA-F5-6814-01 11 124766937 124766937 T C ROBO4 Silent p.G97G 0.30 TCGA-F5-6814-01 11 1247910 1247910 G A MUC5B Missense_Mutation p.D89N 0.11 unknown(0) TCGA-F5-6814-01 11 124947140 124947140 G A SLC37A2 Silent p.Q52Q 0.32 TCGA-F5-6814-01 11 124955876 124955876 G T SLC37A2 Missense_Mutation p.E484D 0.29 deleterious(0.03) benign(0.422) TCGA-F5-6814-01 11 1250475 1250475 G T MUC5B Missense_Mutation p.R351L 0.23 unknown(0) TCGA-F5-6814-01 11 125298952 125298952 G C PKNOX2 Missense_Mutation p.Q327H 0.13 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 11 125359520 125359520 C T FEZ1 Missense_Mutation p.E52K 0.40 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 11 125448059 125448059 C T EI24 Missense_Mutation p.S116L 0.31 tolerated(0.09) benign(0.002) TCGA-F5-6814-01 11 125478111 125478111 A C STT3A Missense_Mutation p.E296D 0.56 tolerated(0.14) benign(0.013) TCGA-F5-6814-01 11 125484040 125484040 G A STT3A Missense_Mutation p.R538Q 0.08 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 11 125503099 125503099 C T CHEK1 Missense_Mutation p.R156W 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 125550673 125550673 C A ACRV1 Translation_Start_Site p.M1? 0.44 tolerated_low_confidence(0.06) benign(0.007) TCGA-F5-6814-01 11 1256410 1256410 A G MUC5B Missense_Mutation p.D909G 0.11 unknown(0) TCGA-F5-6814-01 11 125708307 125708307 C A PATE4 Missense_Mutation p.F94L 0.37 tolerated(1) benign(0) TCGA-F5-6814-01 11 125871638 125871638 T C CDON Missense_Mutation p.T712A 0.20 tolerated(0.91) benign(0.003) TCGA-F5-6814-01 11 125891159 125891159 C T CDON Silent p.A111A 0.39 TCGA-F5-6814-01 11 126132184 126132184 C T FAM118B 3'UTR 0.29 TCGA-F5-6814-01 11 126301201 126301201 G A KIRREL3 Intron 0.17 TCGA-F5-6814-01 11 1271563 1271563 G A MUC5B Missense_Mutation p.A4485T 0.17 benign(0.042) TCGA-F5-6814-01 11 128354748 128354748 C A ETS1 Missense_Mutation p.D278Y 0.26 deleterious(0.01) possibly_damaging(0.903) TCGA-F5-6814-01 11 128359230 128359230 A T ETS1 Missense_Mutation p.F164I 0.16 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 11 128564019 128564019 G A FLI1 5'UTR 0.20 TCGA-F5-6814-01 11 128651915 128651915 G T FLI1 Nonsense_Mutation p.E218* 0.36 TCGA-F5-6814-01 11 128807685 128807685 C A TP53AIP1 Missense_Mutation p.R10I 0.32 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-F5-6814-01 11 128842602 128842602 C T ARHGAP32 Missense_Mutation p.E1253K 0.31 tolerated_low_confidence(0.15) possibly_damaging(0.54) TCGA-F5-6814-01 11 129742855 129742855 G T NFRKB Missense_Mutation p.S921Y 0.27 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-F5-6814-01 11 129993630 129993630 A C APLP2 Missense_Mutation p.N349T 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6814-01 11 130010327 130010327 C T APLP2 Silent p.I636I 0.44 TCGA-F5-6814-01 11 130069845 130069845 G A ST14 Splice_Site p.X603_splice 0.20 TCGA-F5-6814-01 11 130131531 130131531 T C ZBTB44 Missense_Mutation p.T80A 0.16 tolerated(0.8) benign(0.004) TCGA-F5-6814-01 11 130784655 130784655 G A SNX19 Missense_Mutation p.L394F 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 11 130785408 130785408 G A SNX19 Missense_Mutation p.R143W 0.60 deleterious(0) probably_damaging(0.953) TCGA-F5-6814-01 11 132016330 132016330 T C NTM Missense_Mutation p.Y108H 0.14 tolerated(0.3) benign(0.174) TCGA-F5-6814-01 11 132180023 132180023 G A NTM Missense_Mutation p.E227K 0.09 tolerated(0.43) benign(0.003) TCGA-F5-6814-01 11 133807290 133807290 C T IGSF9B Silent p.T220T 0.24 TCGA-F5-6814-01 11 134175059 134175059 T G GLB1L3 Intron 0.09 TCGA-F5-6814-01 11 134182770 134182770 C A GLB1L3 Missense_Mutation p.P497T 0.35 tolerated(0.06) benign(0.115) TCGA-F5-6814-01 11 134183914 134183914 C A GLB1L3 Missense_Mutation p.F553L 0.14 deleterious(0.05) benign(0.199) TCGA-F5-6814-01 11 134240216 134240216 C A GLB1L2 Missense_Mutation p.L380I 0.36 tolerated(0.25) benign(0.001) TCGA-F5-6814-01 11 13514338 13514338 T G PTH Missense_Mutation p.K22T 0.11 tolerated(0.31) benign(0.004) TCGA-F5-6814-01 11 13716346 13716346 A C FAR1 Missense_Mutation p.N12H 0.41 deleterious(0.01) benign(0.04) TCGA-F5-6814-01 11 13721907 13721907 A T FAR1 Missense_Mutation p.K78I 0.49 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 11 1480435 1480435 T C BRSK2 Silent p.C697C 0.11 TCGA-F5-6814-01 11 14880710 14880710 G A PDE3B Missense_Mutation p.R881H 0.24 tolerated(0.22) benign(0.341) TCGA-F5-6814-01 11 14889064 14889064 G A PDE3B Missense_Mutation p.A967T 0.14 deleterious(0) probably_damaging(0.964) TCGA-F5-6814-01 11 14889070 14889070 C A PDE3B Missense_Mutation p.L969I 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 14891092 14891092 C T PDE3B Silent p.I1075I 0.16 TCGA-F5-6814-01 11 14901814 14901814 C A CYP2R1 Missense_Mutation p.D290Y 0.62 deleterious(0) possibly_damaging(0.672) TCGA-F5-6814-01 11 14902066 14902066 C T CYP2R1 Missense_Mutation p.D206N 0.26 tolerated(0.18) benign(0.011) TCGA-F5-6814-01 11 14990321 14990321 A C CALCA 3'UTR 0.30 TCGA-F5-6814-01 11 15134073 15134073 C A INSC Missense_Mutation p.L20I 0.46 tolerated_low_confidence(0.14) benign(0.002) TCGA-F5-6814-01 11 15247286 15247286 A G INSC Missense_Mutation p.E408G 0.15 deleterious(0.02) possibly_damaging(0.857) TCGA-F5-6814-01 11 15247302 15247302 G T INSC Missense_Mutation p.L413F 0.29 tolerated(0.1) possibly_damaging(0.555) TCGA-F5-6814-01 11 1585171 1585171 G A DUSP8 Missense_Mutation p.R94W 0.67 deleterious(0) probably_damaging(0.912) TCGA-F5-6814-01 11 16077295 16077295 T C SOX6 Intron 0.35 TCGA-F5-6814-01 11 1619311 1619311 T C KRTAP5-2 Missense_Mutation p.Y57C 0.14 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 11 1642340 1642340 G T KRTAP5-4 3'UTR 0.24 TCGA-F5-6814-01 11 1642750 1642750 G A KRTAP5-4 Missense_Mutation p.P192S 0.47 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 11 16838436 16838436 G A PLEKHA7 Nonsense_Mutation p.R593* 0.37 TCGA-F5-6814-01 11 17153495 17153495 C A PIK3C2A Missense_Mutation p.K733N 0.21 deleterious(0.04) possibly_damaging(0.878) TCGA-F5-6814-01 11 17408698 17408698 C T KCNJ11 Missense_Mutation p.R314H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 17435008 17435008 T G ABCC8 Missense_Mutation p.E803A 0.23 deleterious(0.01) benign(0.102) TCGA-F5-6814-01 11 17436094 17436094 C T ABCC8 Silent p.E785E 0.29 TCGA-F5-6814-01 11 17617650 17617650 G T OTOG Missense_Mutation p.K1170N 0.40 probably_damaging(0.981) TCGA-F5-6814-01 11 17793958 17793958 C T KCNC1 Silent p.F439F 0.50 TCGA-F5-6814-01 11 18042535 18042535 C T TPH1 3'UTR 0.31 TCGA-F5-6814-01 11 18044406 18044406 T C TPH1 Missense_Mutation p.T367A 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-F5-6814-01 11 18134057 18134057 C T SAA3P RNA 0.62 TCGA-F5-6814-01 11 18159356 18159356 C A MRGPRX3 Missense_Mutation p.L203I 0.30 deleterious(0.04) possibly_damaging(0.501) TCGA-F5-6814-01 11 18195145 18195145 C T MRGPRX4 Silent p.S114S 0.36 TCGA-F5-6814-01 11 18436817 18436817 C A LDHC Missense_Mutation p.F71L 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-F5-6814-01 11 18478250 18478250 T G LDHAL6A Missense_Mutation p.L8R 0.43 deleterious(0.01) benign(0.042) TCGA-F5-6814-01 11 1858238 1858238 G T SYT8 Missense_Mutation p.R295I 0.17 deleterious(0) probably_damaging(0.913) TCGA-F5-6814-01 11 18637379 18637379 C A SPTY2D1 Nonsense_Mutation p.E148* 0.39 TCGA-F5-6814-01 11 18722531 18722531 T C TMEM86A Missense_Mutation p.Y25H 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 11 18726036 18726036 C A IGSF22 Missense_Mutation p.K1320N 0.47 deleterious_low_confidence(0.01) benign(0.113) TCGA-F5-6814-01 11 18956402 18956402 T G MRGPRX1 5'UTR 0.11 TCGA-F5-6814-01 11 1905219 1905219 G A LSP1 Missense_Mutation p.E314K 0.38 tolerated_low_confidence(0.08) benign(0.396) TCGA-F5-6814-01 11 19077376 19077376 T G MRGPRX2 Missense_Mutation p.I192L 0.28 deleterious(0.03) benign(0.011) TCGA-F5-6814-01 11 19186653 19186653 C T ZDHHC13 Nonsense_Mutation p.R451* 0.43 TCGA-F5-6814-01 11 19207823 19207823 C A CSRP3 Missense_Mutation p.E118D 0.30 tolerated(0.71) benign(0.001) TCGA-F5-6814-01 11 19213932 19213932 C A CSRP3 Nonsense_Mutation p.E22* 0.37 TCGA-F5-6814-01 11 20177817 20177817 G A DBX1 Silent p.F364F 0.30 TCGA-F5-6814-01 11 20180780 20180780 G A DBX1 Silent p.F142F 0.44 TCGA-F5-6814-01 11 20398236 20398236 A C HTATIP2 Silent p.S172S 0.38 TCGA-F5-6814-01 11 20629177 20629177 G T SLC6A5 Missense_Mutation p.D322Y 0.40 deleterious(0) possibly_damaging(0.82) TCGA-F5-6814-01 11 20636242 20636242 G A SLC6A5 Missense_Mutation p.D335N 0.43 tolerated(0.22) benign(0.001) TCGA-F5-6814-01 11 22281250 22281250 C A ANO5 Missense_Mutation p.F531L 0.26 tolerated(0.33) probably_damaging(0.944) TCGA-F5-6814-01 11 22291946 22291946 A C ANO5 Missense_Mutation p.S663R 0.12 tolerated(0.21) possibly_damaging(0.486) TCGA-F5-6814-01 11 22294500 22294500 C A ANO5 Missense_Mutation p.L734I 0.11 deleterious(0) possibly_damaging(0.796) TCGA-F5-6814-01 11 22399083 22399083 T C SLC17A6 Missense_Mutation p.C516R 0.37 deleterious(0.03) benign(0.008) TCGA-F5-6814-01 11 22399113 22399113 G T SLC17A6 Nonsense_Mutation p.E526* 0.40 TCGA-F5-6814-01 11 2426778 2426778 C T TRPM5 Missense_Mutation p.A1124T 0.36 tolerated(0.32) benign(0.031) TCGA-F5-6814-01 11 2439430 2439430 G T TRPM5 Missense_Mutation p.F291L 0.35 tolerated(0.07) benign(0.332) TCGA-F5-6814-01 11 25100148 25100149 - A LUZP2 Frame_Shift_Ins p.P331Tfs*6 0.21 TCGA-F5-6814-01 11 26556059 26556059 T C ANO3 Missense_Mutation p.V309A 0.42 tolerated(0.1) probably_damaging(0.992) TCGA-F5-6814-01 11 26581178 26581178 A C MUC15 3'UTR 0.39 TCGA-F5-6814-01 11 26581312 26581312 T G ANO3 Missense_Mutation p.F478C 0.14 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 11 26587420 26587420 G A MUC15 Missense_Mutation p.P23S 0.15 tolerated_low_confidence(0.32) possibly_damaging(0.803) TCGA-F5-6814-01 11 26621259 26621259 C A ANO3 Missense_Mutation p.L612I 0.43 tolerated(0.34) benign(0.007) TCGA-F5-6814-01 11 26725484 26725484 T G SLC5A12 Missense_Mutation p.K179T 0.16 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 11 27016830 27016830 T G FIBIN 3'UTR 0.12 TCGA-F5-6814-01 11 27018326 27018326 A G FIBIN 3'UTR 0.33 TCGA-F5-6814-01 11 27521024 27521024 A C LIN7C Missense_Mutation p.I107S 0.34 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 11 28352414 28352414 T G METTL15 3'UTR 0.11 TCGA-F5-6814-01 11 30033966 30033966 C T KCNA4 Missense_Mutation p.R87Q 0.30 tolerated_low_confidence(0.23) benign(0.238) TCGA-F5-6814-01 11 30034493 30034493 A C KCNA4 5'UTR 0.20 TCGA-F5-6814-01 11 30352755 30352755 A C ARL14EP Missense_Mutation p.K87T 0.38 deleterious_low_confidence(0.01) benign(0.366) TCGA-F5-6814-01 11 30432942 30432942 G T MPPED2 3'UTR 0.35 TCGA-F5-6814-01 11 30921182 30921182 C A DCDC1 Splice_Site p.X631_splice 0.40 TCGA-F5-6814-01 11 30944101 30944101 C T DCDC1 Missense_Mutation p.E1028K 0.40 deleterious(0.03) benign(0) TCGA-F5-6814-01 11 30946880 30946880 T G DCDC1 Missense_Mutation p.L991F 0.44 deleterious(0) possibly_damaging(0.765) TCGA-F5-6814-01 11 31392303 31392303 C T DNAJC24 Missense_Mutation p.A3V 0.12 deleterious(0) benign(0.255) TCGA-F5-6814-01 11 31436427 31436427 G A DNAJC24 Missense_Mutation p.E61K 0.30 tolerated(0.08) probably_damaging(0.942) TCGA-F5-6814-01 11 31484828 31484828 C A IMMP1L 5'UTR 0.13 TCGA-F5-6814-01 11 31815638 31815638 T G PAX6 Missense_Mutation p.D250A 0.39 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 11 31823220 31823220 T G PAX6 Missense_Mutation p.E96D 0.40 tolerated(0.39) benign(0.004) TCGA-F5-6814-01 11 32624185 32624185 A G EIF3M 3'UTR 0.17 TCGA-F5-6814-01 11 32637565 32637565 C A CCDC73 Missense_Mutation p.E432D 0.32 tolerated(0.61) benign(0.146) TCGA-F5-6814-01 11 33308875 33308875 A C HIPK3 Missense_Mutation p.Q305H 0.48 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 33360355 33360355 A C HIPK3 Missense_Mutation p.K465T 0.18 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 33564944 33564944 T C KIAA1549L Missense_Mutation p.I315T 0.13 tolerated_low_confidence(0.07) benign(0.004) TCGA-F5-6814-01 11 33565551 33565551 A G KIAA1549L Silent p.Q517Q 0.31 TCGA-F5-6814-01 11 33565833 33565833 G T KIAA1549L Missense_Mutation p.R611S 0.35 deleterious_low_confidence(0) benign(0.069) TCGA-F5-6814-01 11 33566619 33566619 G A KIAA1549L Missense_Mutation p.G730E 0.25 tolerated_low_confidence(0.18) benign(0.282) TCGA-F5-6814-01 11 33589686 33589686 G T KIAA1549L Missense_Mutation p.E1084D 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 11 33780086 33780086 G A FBXO3 Silent p.D140D 0.40 TCGA-F5-6814-01 11 34113541 34113541 G T CAPRIN1 Missense_Mutation p.S548I 0.23 deleterious(0.02) benign(0.418) TCGA-F5-6814-01 11 34511592 34511592 T G ELF5 Missense_Mutation p.N134H 0.17 tolerated(0.12) benign(0.125) TCGA-F5-6814-01 11 35282365 35282365 G A SLC1A2 3'UTR 0.10 TCGA-F5-6814-01 11 35333789 35333789 G A SLC1A2 Nonsense_Mutation p.R173* 0.32 TCGA-F5-6814-01 11 35454160 35454160 T C PAMR1 Missense_Mutation p.D653G 0.19 deleterious(0.03) benign(0.128) TCGA-F5-6814-01 11 35456344 35456344 T C PAMR1 Missense_Mutation p.K465E 0.55 deleterious(0) possibly_damaging(0.511) TCGA-F5-6814-01 11 35492291 35492291 G A PAMR1 Silent p.R190R 0.30 TCGA-F5-6814-01 11 35641942 35641942 G T FJX1 3'UTR 0.55 TCGA-F5-6814-01 11 35642015 35642015 T C FJX1 3'UTR 0.31 TCGA-F5-6814-01 11 35684870 35684870 G A TRIM44 Missense_Mutation p.A71T 0.21 tolerated(0.23) possibly_damaging(0.823) TCGA-F5-6814-01 11 35685320 35685320 G T TRIM44 Nonsense_Mutation p.E221* 0.23 TCGA-F5-6814-01 11 36599967 36599967 T C RAG1 3'UTR 0.25 TCGA-F5-6814-01 11 36600831 36600831 A G RAG1 3'UTR 0.22 TCGA-F5-6814-01 11 3712617 3712617 G A NUP98 Nonsense_Mutation p.R1472* 0.14 TCGA-F5-6814-01 11 3724101 3724101 T G NUP98 Missense_Mutation p.K1035T 0.33 deleterious(0.01) probably_damaging(0.97) TCGA-F5-6814-01 11 3726541 3726541 C T NUP98 Missense_Mutation p.A991T 0.23 tolerated(0.24) benign(0.075) TCGA-F5-6814-01 11 3735152 3735152 G A NUP98 Missense_Mutation p.R825C 0.35 deleterious(0) probably_damaging(0.941) TCGA-F5-6814-01 11 3849133 3849133 A G RHOG Missense_Mutation p.V79A 0.37 deleterious(0) possibly_damaging(0.478) TCGA-F5-6814-01 11 40136057 40136057 T G LRRC4C Missense_Mutation p.N596H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-F5-6814-01 11 40137349 40137349 G T LRRC4C Missense_Mutation p.S165Y 0.34 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 11 40137454 40137454 T G LRRC4C Missense_Mutation p.E130A 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 4104128 4104128 A C STIM1 Missense_Mutation p.K385T 0.38 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 11 43425637 43425637 T G TTC17 Silent p.S474S 0.23 TCGA-F5-6814-01 11 43465745 43465745 C T TTC17 Missense_Mutation p.S884F 0.51 deleterious(0.01) possibly_damaging(0.878) TCGA-F5-6814-01 11 43965365 43965365 T C C11orf96 3'Flank 0.36 TCGA-F5-6814-01 11 43965492 43965492 G A C11orf96 3'Flank 0.28 TCGA-F5-6814-01 11 44069915 44069915 G T ACCSL Missense_Mutation p.R110M 0.18 tolerated(0.09) benign(0.227) TCGA-F5-6814-01 11 44096228 44096228 G T ACCS Missense_Mutation p.E162D 0.11 tolerated(0.13) benign(0.341) TCGA-F5-6814-01 11 44331484 44331484 G A ALX4 Silent p.F43F 0.33 TCGA-F5-6814-01 11 44639796 44639796 T G CD82 Missense_Mutation p.S175A 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 44639801 44639801 C T CD82 Silent p.C176C 0.15 TCGA-F5-6814-01 11 44950712 44950712 T G TSPAN18 Missense_Mutation p.F244V 0.31 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 11 4510793 4510793 C A OR52K1 Silent p.V221V 0.37 TCGA-F5-6814-01 11 45918427 45918427 C T MAPK8IP1 Intron 0.38 TCGA-F5-6814-01 11 45928781 45928781 G T C11orf94 Missense_Mutation p.L6M 0.15 deleterious_low_confidence(0.01) benign(0.024) TCGA-F5-6814-01 11 45932472 45932472 A G PEX16 Missense_Mutation p.V310A 0.14 deleterious(0) possibly_damaging(0.782) TCGA-F5-6814-01 11 46001401 46001401 T C PHF21A Silent p.Q90Q 0.41 TCGA-F5-6814-01 11 460228 460228 C T PTDSS2 Missense_Mutation p.T75M 0.37 tolerated(0.09) benign(0.012) TCGA-F5-6814-01 11 46334423 46334423 G T CREB3L1 Missense_Mutation p.E328D 0.21 deleterious(0.01) probably_damaging(0.976) TCGA-F5-6814-01 11 4675687 4675687 G T OR51E1 3'UTR 0.20 TCGA-F5-6814-01 11 4676071 4676071 G T OR51E1 3'UTR 0.34 TCGA-F5-6814-01 11 46761002 46761002 G T F2 3'UTR 0.43 TCGA-F5-6814-01 11 46761004 46761004 A C F2 3'UTR 0.21 TCGA-F5-6814-01 11 4676128 4676128 C A OR51E1 3'UTR 0.09 TCGA-F5-6814-01 11 46784612 46784612 T C CKAP5 Missense_Mutation p.K1269E 0.25 deleterious(0.04) possibly_damaging(0.867) TCGA-F5-6814-01 11 47295382 47295382 C T MADD 5'UTR 0.24 TCGA-F5-6814-01 11 47295475 47295475 A C MADD Missense_Mutation p.K4Q 0.23 deleterious(0.01) benign(0.023) TCGA-F5-6814-01 11 47310546 47310546 T G MADD Missense_Mutation p.I894S 0.11 deleterious_low_confidence(0) benign(0.266) TCGA-F5-6814-01 11 47348331 47348331 C T MADD Nonsense_Mutation p.R1589* 0.19 TCGA-F5-6814-01 11 47363703 47363703 C T MYBPC3 Silent p.K543K 0.45 TCGA-F5-6814-01 11 47587229 47587229 A G PTPMT1 Missense_Mutation p.T19A 0.17 deleterious(0) possibly_damaging(0.837) TCGA-F5-6814-01 11 47597196 47597196 A C KBTBD4 Missense_Mutation p.F231L 0.39 tolerated(0.16) benign(0.029) TCGA-F5-6814-01 11 47602147 47602147 C A NDUFS3 Silent p.I68I 0.37 TCGA-F5-6814-01 11 47602224 47602224 C T NDUFS3 Intron 0.35 TCGA-F5-6814-01 11 47713725 47713725 C A AGBL2 Nonsense_Mutation p.G260* 0.11 TCGA-F5-6814-01 11 48177584 48177584 G A PTPRJ Silent p.P1117P 0.24 TCGA-F5-6814-01 11 48327984 48327984 T C OR4S1 Silent p.C70C 0.25 TCGA-F5-6814-01 11 48328008 48328008 G T OR4S1 Missense_Mutation p.K78N 0.19 deleterious(0.01) probably_damaging(0.991) TCGA-F5-6814-01 11 4843595 4843595 A C OR51F2 Missense_Mutation p.K327T 0.37 tolerated(0.29) benign(0.403) TCGA-F5-6814-01 11 4869561 4869561 A G OR51S1 Missense_Mutation p.L293S 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 4869969 4869969 G T OR51S1 Missense_Mutation p.S157Y 0.22 deleterious(0.03) benign(0.009) TCGA-F5-6814-01 11 4904093 4904093 C A OR51T1 Missense_Mutation p.L349I 0.47 tolerated_low_confidence(0.2) possibly_damaging(0.462) TCGA-F5-6814-01 11 49598156 49598156 C T RP11-707M1.1 RNA 0.36 TCGA-F5-6814-01 11 4968038 4968038 G A OR51A4 Missense_Mutation p.A98V 0.43 tolerated(0.07) benign(0.367) TCGA-F5-6814-01 11 49831914 49831914 C A RP11-707M1.1 RNA 0.50 TCGA-F5-6814-01 11 49973999 49973999 G T OR4C13 Nonsense_Mutation p.E9* 0.24 TCGA-F5-6814-01 11 49974286 49974286 T G OR4C13 Missense_Mutation p.F104L 0.09 tolerated_low_confidence(0.37) benign(0.011) TCGA-F5-6814-01 11 5011871 5011871 G A MMP26 Missense_Mutation p.D122N 0.09 tolerated(0.17) benign(0.012) TCGA-F5-6814-01 11 5021048 5021048 C T OR51L1 Missense_Mutation p.A279V 0.39 deleterious(0) probably_damaging(0.931) TCGA-F5-6814-01 11 5068345 5068345 A C OR52J3 Missense_Mutation p.N197T 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-F5-6814-01 11 5080262 5080262 A C OR52E2 Missense_Mutation p.I199S 0.20 deleterious(0.01) possibly_damaging(0.878) TCGA-F5-6814-01 11 51411700 51411700 T G OR4A5 Missense_Mutation p.K232N 0.23 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-F5-6814-01 11 51515542 51515542 G A OR4C46 Silent p.K87K 0.39 TCGA-F5-6814-01 11 5322807 5322807 G A OR51B4 Missense_Mutation p.R124C 0.37 tolerated(1) benign(0.004) TCGA-F5-6814-01 11 5344876 5344876 G T OR51B2 Missense_Mutation p.L218I 0.28 deleterious(0.03) benign(0.232) TCGA-F5-6814-01 11 5373240 5373240 G A OR51B6 Missense_Mutation p.R168Q 0.20 tolerated(0.09) benign(0.055) TCGA-F5-6814-01 11 5410800 5410800 C A OR51M1 Missense_Mutation p.L58M 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 11 55111174 55111174 C A OR4A16 Silent p.I166I 0.08 TCGA-F5-6814-01 11 55136003 55136003 T G OR4A15 Missense_Mutation p.L215R 0.23 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 11 55136117 55136117 T A OR4A15 Missense_Mutation p.L253H 0.07 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 11 55136320 55136320 G T OR4A15 Nonsense_Mutation p.E321* 0.29 TCGA-F5-6814-01 11 55321988 55321988 T G OR4C15 Missense_Mutation p.L69R 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 11 55322285 55322285 T C OR4C15 Missense_Mutation p.L168P 0.34 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-F5-6814-01 11 55322691 55322691 C A OR4C15 Missense_Mutation p.F303L 0.41 tolerated_low_confidence(0.08) possibly_damaging(0.57) TCGA-F5-6814-01 11 55340017 55340017 C A OR4C16 Silent p.V138V 0.29 TCGA-F5-6814-01 11 55340079 55340079 T G OR4C16 Missense_Mutation p.F159C 0.39 deleterious(0.02) benign(0.078) TCGA-F5-6814-01 11 55340218 55340218 T C OR4C16 Silent p.C205C 0.20 TCGA-F5-6814-01 11 55371678 55371678 A G OR4C11 Missense_Mutation p.Y58H 0.17 deleterious(0.01) probably_damaging(0.986) TCGA-F5-6814-01 11 55540959 55540959 C A OR5D13 Missense_Mutation p.L16I 0.27 deleterious(0) possibly_damaging(0.606) TCGA-F5-6814-01 11 55579407 55579407 T C OR5L1 Silent p.C155C 0.34 TCGA-F5-6814-01 11 55579420 55579420 T G OR5L1 Missense_Mutation p.L160V 0.36 tolerated(0.41) benign(0.108) TCGA-F5-6814-01 11 55587836 55587836 C T OR5D18 Missense_Mutation p.S244F 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 55703390 55703390 A G OR5I1 Missense_Mutation p.S163P 0.12 deleterious(0.04) benign(0) TCGA-F5-6814-01 11 55703837 55703837 A G OR5I1 Missense_Mutation p.F14L 0.15 deleterious(0) probably_damaging(0.952) TCGA-F5-6814-01 11 55703869 55703869 A C OR5I1 Missense_Mutation p.F3C 0.48 tolerated(0.07) benign(0.237) TCGA-F5-6814-01 11 55761949 55761949 G A OR5F1 Silent p.I51I 0.26 TCGA-F5-6814-01 11 55798032 55798032 A C OR5AS1 Silent p.I46I 0.43 TCGA-F5-6814-01 11 55872587 55872587 G T OR8H2 Missense_Mutation p.E23D 0.21 tolerated(0.06) benign(0.007) TCGA-F5-6814-01 11 55873336 55873336 T C OR8H2 Missense_Mutation p.V273A 0.23 deleterious(0.01) benign(0.443) TCGA-F5-6814-01 11 55890148 55890148 G A OR8H3 Silent p.Q100Q 0.11 TCGA-F5-6814-01 11 55904450 55904450 T G OR8J3 Missense_Mutation p.T249P 0.09 deleterious(0) probably_damaging(0.925) TCGA-F5-6814-01 11 55904974 55904974 G T OR8J3 Missense_Mutation p.S74Y 0.22 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 11 55905144 55905144 G T OR8J3 Silent p.V17V 0.22 TCGA-F5-6814-01 11 55927162 55927162 A C OR8K5 Missense_Mutation p.F211C 0.24 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-F5-6814-01 11 56043468 56043468 T G OR5T1 Silent p.T118T 0.14 TCGA-F5-6814-01 11 56128365 56128365 C A OR8J1 Missense_Mutation p.L215I 0.39 tolerated(0.1) benign(0.042) TCGA-F5-6814-01 11 56237624 56237624 G C OR5M3 Missense_Mutation p.A117G 0.32 deleterious(0.01) possibly_damaging(0.877) TCGA-F5-6814-01 11 5624952 5624952 C T TRIM6 Missense_Mutation p.A165V 0.24 tolerated(0.42) benign(0.182) TCGA-F5-6814-01 11 56257983 56257983 A C OR5M8 Missense_Mutation p.I288M 0.12 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 11 56380508 56380508 G T OR5M1 Missense_Mutation p.F157L 0.37 tolerated(1) benign(0) TCGA-F5-6814-01 11 56380904 56380904 C A OR5M1 Missense_Mutation p.K25N 0.13 tolerated(0.23) benign(0.342) TCGA-F5-6814-01 11 56409353 56409353 G T OR5AP2 Missense_Mutation p.P188Q 0.44 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 11 56409739 56409739 G T OR5AP2 Silent p.L59L 0.14 TCGA-F5-6814-01 11 56510657 56510657 C T OR9G4 Missense_Mutation p.E211K 0.45 deleterious(0.05) possibly_damaging(0.689) TCGA-F5-6814-01 11 57004306 57004306 C T APLNR Missense_Mutation p.R58Q 0.25 tolerated(0.43) benign(0.064) TCGA-F5-6814-01 11 57144356 57144356 G A PRG3 Silent p.C215C 0.71 TCGA-F5-6814-01 11 57369592 57369592 G A SERPING1 Missense_Mutation p.G212D 0.29 tolerated(0.17) benign(0.008) TCGA-F5-6814-01 11 57511837 57511837 A C BTBD18 Silent p.T636T 0.20 TCGA-F5-6814-01 11 57512143 57512143 C A BTBD18 Missense_Mutation p.K534N 0.42 deleterious(0.01) possibly_damaging(0.567) TCGA-F5-6814-01 11 57576862 57576862 G A CTNND1 Missense_Mutation p.A787T 0.13 tolerated(1) benign(0.109) TCGA-F5-6814-01 11 5757725 5757725 G T OR56B1 5'UTR 0.31 TCGA-F5-6814-01 11 57582919 57582919 C T CTNND1 Nonsense_Mutation p.R919* 0.20 TCGA-F5-6814-01 11 57798967 57798967 C A OR6Q1 Missense_Mutation p.F181L 0.46 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 11 57948031 57948031 G T OR9Q1 3'UTR 0.23 TCGA-F5-6814-01 11 57948876 57948876 A C OR9Q1 3'UTR 0.22 TCGA-F5-6814-01 11 57983179 57983179 A C OR1S1 Missense_Mutation p.K321N 0.24 deleterious(0.03) possibly_damaging(0.517) TCGA-F5-6814-01 11 5798917 5798917 G A OR52N5 Silent p.F316F 0.12 TCGA-F5-6814-01 11 5809124 5809124 C G OR52N1 Missense_Mutation p.R308T 0.24 deleterious(0.02) benign(0.071) TCGA-F5-6814-01 11 58170041 58170041 G A OR5B3 Missense_Mutation p.P281L 0.39 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-F5-6814-01 11 58190556 58190556 A G OR5B2 Missense_Mutation p.F60S 0.20 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-F5-6814-01 11 58207110 58207110 A G OR5B12 Missense_Mutation p.V172A 0.47 deleterious_low_confidence(0) benign(0.412) TCGA-F5-6814-01 11 58274702 58274702 C A OR5B21 Nonsense_Mutation p.E293* 0.45 TCGA-F5-6814-01 11 58384891 58384891 C A ZFP91 Silent p.I475I 0.40 TCGA-F5-6814-01 11 5862259 5862259 G T OR52E6 Missense_Mutation p.P290H 0.43 deleterious(0.01) benign(0.132) TCGA-F5-6814-01 11 5878644 5878644 C A OR52E8 Nonsense_Mutation p.E97* 0.17 TCGA-F5-6814-01 11 58892586 58892586 G A FAM111B Missense_Mutation p.R339H 0.14 tolerated(0.71) benign(0.001) TCGA-F5-6814-01 11 58921012 58921012 T G FAM111A 3'UTR 0.14 TCGA-F5-6814-01 11 58978797 58978797 A C MPEG1 Silent p.V514V 0.14 TCGA-F5-6814-01 11 5905637 5905637 A C OR52E4 Missense_Mutation p.I39L 0.14 tolerated(0.11) benign(0.037) TCGA-F5-6814-01 11 59190163 59190163 T G OR5A2 Silent p.T88T 0.27 TCGA-F5-6814-01 11 59190358 59190358 T G OR5A2 Missense_Mutation p.Q23H 0.17 tolerated(0.08) possibly_damaging(0.707) TCGA-F5-6814-01 11 59245582 59245582 C A OR4D10 Missense_Mutation p.S227Y 0.38 deleterious(0.02) benign(0.114) TCGA-F5-6814-01 11 59283065 59283065 C A OR4D9 Missense_Mutation p.S227Y 0.19 deleterious(0.02) benign(0.114) TCGA-F5-6814-01 11 59423163 59423163 A C PATL1 Missense_Mutation p.F288L 0.38 tolerated(1) benign(0.003) TCGA-F5-6814-01 11 59562919 59562919 G A STX3 Silent p.T250T 0.27 TCGA-F5-6814-01 11 59608656 59608656 C T GIF Missense_Mutation p.G218D 0.36 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 59629021 59629021 A C TCN1 Missense_Mutation p.F179V 0.15 deleterious(0.01) possibly_damaging(0.811) TCGA-F5-6814-01 11 59830060 59830060 G A MS4A3 Silent p.P92P 0.37 TCGA-F5-6814-01 11 59939635 59939635 G T MS4A6A 3'Flank 0.43 TCGA-F5-6814-01 11 6007179 6007179 T G OR52L1 Missense_Mutation p.K328Q 0.33 deleterious(0.02) possibly_damaging(0.662) TCGA-F5-6814-01 11 60107349 60107349 C T MS4A6E Missense_Mutation p.S122F 0.41 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 11 60183120 60183120 G T MS4A14 Nonsense_Mutation p.E260* 0.32 TCGA-F5-6814-01 11 60229879 60229879 C A MS4A1 Missense_Mutation p.T11N 0.18 deleterious(0.04) benign(0.01) TCGA-F5-6814-01 11 6023314 6023314 C A OR56A4 Missense_Mutation p.K355N 0.29 deleterious(0.01) benign(0.03) TCGA-F5-6814-01 11 60234523 60234523 G T MS4A1 Missense_Mutation p.R222I 0.36 deleterious(0.02) possibly_damaging(0.828) TCGA-F5-6814-01 11 60310183 60310183 C A MS4A13 3'UTR 0.41 TCGA-F5-6814-01 11 6048649 6048649 G T OR56A1 Missense_Mutation p.L96I 0.14 tolerated(0.42) benign(0.004) TCGA-F5-6814-01 11 6048793 6048793 C T OR56A1 Missense_Mutation p.A48T 0.11 deleterious(0.03) probably_damaging(0.989) TCGA-F5-6814-01 11 60637368 60637368 A C ZP1 Missense_Mutation p.Y226S 0.34 tolerated(0.47) benign(0.005) TCGA-F5-6814-01 11 60781018 60781018 G T CD6 Missense_Mutation p.R425I 0.24 deleterious(0) possibly_damaging(0.714) TCGA-F5-6814-01 11 60886833 60886833 G T CD5 Missense_Mutation p.E197D 0.37 tolerated(0.09) benign(0.01) TCGA-F5-6814-01 11 61026600 61026600 C T VWCE Silent p.T805T 0.13 TCGA-F5-6814-01 11 61048661 61048661 C T VWCE Silent p.R278R 0.11 TCGA-F5-6814-01 11 61131928 61131928 C A TMEM138 Silent p.L22L 0.17 TCGA-F5-6814-01 11 6129197 6129197 A G OR56B4 Silent p.E63E 0.14 TCGA-F5-6814-01 11 61318855 61318855 C A SYT7 Splice_Site p.X72_splice 0.12 TCGA-F5-6814-01 11 61674924 61674924 G A RAB3IL1 Nonsense_Mutation p.R127* 0.09 TCGA-F5-6814-01 11 62064977 62064977 G T SCGB1D4 Missense_Mutation p.S70Y 0.20 deleterious(0) probably_damaging(0.959) TCGA-F5-6814-01 11 62294912 62294912 A G AHNAK Missense_Mutation p.I2326T 0.10 benign(0.007) TCGA-F5-6814-01 11 62299839 62299839 C T AHNAK Missense_Mutation p.D684N 0.19 benign(0.054) TCGA-F5-6814-01 11 62373378 62373378 C A EML3 Missense_Mutation p.K577N 0.35 deleterious(0.02) benign(0.358) TCGA-F5-6814-01 11 62415052 62415052 C T INTS5 Missense_Mutation p.E834K 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6814-01 11 62434555 62434555 C A METTL12 3'UTR 0.38 TCGA-F5-6814-01 11 62435118 62435118 G T C11orf48 Missense_Mutation p.L139I 0.37 tolerated_low_confidence(0.2) benign(0) TCGA-F5-6814-01 11 62439632 62439632 G T C11orf48 5'Flank 0.44 TCGA-F5-6814-01 11 62489849 62489849 A C HNRNPUL2 Missense_Mutation p.F367V 0.23 deleterious(0) possibly_damaging(0.621) TCGA-F5-6814-01 11 62491896 62491896 C A HNRNPUL2 Missense_Mutation p.D181Y 0.41 deleterious(0.01) benign(0.354) TCGA-F5-6814-01 11 62575119 62575119 G T STX5 Intron 0.36 TCGA-F5-6814-01 11 62598702 62598702 T G STX5 Missense_Mutation p.K5T 0.13 deleterious_low_confidence(0.02) possibly_damaging(0.617) TCGA-F5-6814-01 11 6265585 6265585 T G CNGA4 Silent p.T558T 0.24 TCGA-F5-6814-01 11 62751433 62751433 G A SLC22A6 Silent p.F152F 0.30 TCGA-F5-6814-01 11 62766485 62766485 G T SLC22A8 Missense_Mutation p.F223L 0.38 tolerated(0.65) probably_damaging(0.914) TCGA-F5-6814-01 11 62886358 62886358 G A SLC22A24 Intron 0.36 TCGA-F5-6814-01 11 62886475 62886475 G A SLC22A24 Missense_Mutation p.L247F 0.50 tolerated(0.12) benign(0.186) TCGA-F5-6814-01 11 62933558 62933558 G T SLC22A25 Missense_Mutation p.L415I 0.13 deleterious(0.02) possibly_damaging(0.847) TCGA-F5-6814-01 11 62996982 62996982 C T SLC22A25 Missense_Mutation p.R48H 0.19 deleterious(0.03) benign(0.087) TCGA-F5-6814-01 11 63064794 63064794 C A SLC22A10 Missense_Mutation p.L176I 0.24 deleterious(0.04) possibly_damaging(0.708) TCGA-F5-6814-01 11 63381560 63381560 G A PLA2G16 5'UTR 0.42 TCGA-F5-6814-01 11 63486609 63486609 A C RTN3 Missense_Mutation p.K212T 0.23 deleterious(0.04) benign(0.232) TCGA-F5-6814-01 11 63488089 63488089 C A RTN3 Missense_Mutation p.D705E 0.24 tolerated(0.06) benign(0.035) TCGA-F5-6814-01 11 63681896 63681896 C A RCOR2 Nonsense_Mutation p.E200* 0.43 TCGA-F5-6814-01 11 64055678 64055678 T C GPR137 Missense_Mutation p.S317P 0.16 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 11 64064748 64064748 C A KCNK4 Missense_Mutation p.F157L 0.31 tolerated(0.09) benign(0.202) TCGA-F5-6814-01 11 64116395 64116395 G A CCDC88B Intron 0.29 TCGA-F5-6814-01 11 64135603 64135603 G A RPS6KA4 Splice_Site p.X358_splice 0.25 TCGA-F5-6814-01 11 6422860 6422860 G A APBB1 Missense_Mutation p.R481C 0.50 deleterious(0) possibly_damaging(0.644) TCGA-F5-6814-01 11 64337296 64337296 C A SLC22A11 Missense_Mutation p.P519T 0.33 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 11 64338514 64338514 G T SLC22A11 Nonstop_Mutation p.*551Yext*89 0.18 TCGA-F5-6814-01 11 64361158 64361158 C A SLC22A12 Missense_Mutation p.S238Y 0.22 deleterious(0) possibly_damaging(0.815) TCGA-F5-6814-01 11 64502690 64502690 G A RASGRP2 Missense_Mutation p.R436W 0.25 deleterious(0) probably_damaging(0.952) TCGA-F5-6814-01 11 64557095 64557095 C A MAP4K2 Missense_Mutation p.D793Y 0.27 tolerated(0.37) benign(0.028) TCGA-F5-6814-01 11 64645818 64645818 T G EHD1 Missense_Mutation p.Y40S 0.23 deleterious(0) possibly_damaging(0.542) TCGA-F5-6814-01 11 64722219 64722219 C T C11orf85 Intron 0.33 TCGA-F5-6814-01 11 64854242 64854242 C A ZFPL1 Missense_Mutation p.F153L 0.39 tolerated(0.44) benign(0.007) TCGA-F5-6814-01 11 64988616 64988616 A C SLC22A20 Intron 0.10 TCGA-F5-6814-01 11 65293427 65293427 G T SCYL1 Silent p.V96V 0.36 TCGA-F5-6814-01 11 65361243 65361243 C T KCNK7 Missense_Mutation p.R141H 0.17 tolerated(0.09) benign(0.064) TCGA-F5-6814-01 11 65392927 65392927 G T PCNXL3 Missense_Mutation p.E1027D 0.45 deleterious(0.02) possibly_damaging(0.482) TCGA-F5-6814-01 11 65393203 65393203 T G PCNXL3 Missense_Mutation p.F1072L 0.21 deleterious(0.01) benign(0.325) TCGA-F5-6814-01 11 65655185 65655185 A G FIBP Silent p.F99F 0.21 TCGA-F5-6814-01 11 6567536 6567536 C A DNHD1 Missense_Mutation p.F1789L 0.45 benign(0.046) TCGA-F5-6814-01 11 65727412 65727412 G T SART1 5'Flank 0.35 TCGA-F5-6814-01 11 65744169 65744169 G A SART1 Missense_Mutation p.E597K 0.58 deleterious(0.02) benign(0.197) TCGA-F5-6814-01 11 65771322 65771322 G A BANF1 3'UTR 0.40 TCGA-F5-6814-01 11 65789056 65789056 G A CATSPER1 Silent p.F534F 0.38 TCGA-F5-6814-01 11 65793785 65793785 G T CATSPER1 Missense_Mutation p.F22L 0.29 tolerated(1) benign(0.001) TCGA-F5-6814-01 11 65812790 65812790 G T GAL3ST3 Missense_Mutation p.L33I 0.37 tolerated(0.08) possibly_damaging(0.448) TCGA-F5-6814-01 11 6585653 6585653 C T DNHD1 Missense_Mutation p.R3459C 0.38 probably_damaging(1) TCGA-F5-6814-01 11 66009002 66009002 C T PACS1 Missense_Mutation p.S845L 0.11 tolerated(0.16) benign(0.006) TCGA-F5-6814-01 11 66050253 66050253 T C CNIH2 Splice_Site p.X66_splice 0.25 TCGA-F5-6814-01 11 66130984 66130984 C T SLC29A2 Missense_Mutation p.A432T 0.12 tolerated(0.19) benign(0.023) TCGA-F5-6814-01 11 6632505 6632505 T G TAF10 Missense_Mutation p.K161T 0.40 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 11 66334760 66334760 C A CTSF Missense_Mutation p.K188N 0.18 deleterious(0.03) possibly_damaging(0.805) TCGA-F5-6814-01 11 66335464 66335464 C A CTSF Missense_Mutation p.K101N 0.31 tolerated(0.32) benign(0.02) TCGA-F5-6814-01 11 66358533 66358533 C A CCDC87 Nonsense_Mutation p.E652* 0.27 TCGA-F5-6814-01 11 66359633 66359633 G A CCDC87 Missense_Mutation p.S285L 0.24 tolerated(0.23) benign(0.001) TCGA-F5-6814-01 11 66407272 66407272 A C RBM4 Missense_Mutation p.E30D 0.34 deleterious(0.01) benign(0.262) TCGA-F5-6814-01 11 6647873 6647873 C T DCHS1 Missense_Mutation p.A2092T 0.27 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 6655375 6655375 C A DCHS1 Missense_Mutation p.D654Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 11 66807614 66807614 C T SYT12 Silent p.F187F 0.40 TCGA-F5-6814-01 11 67046686 67046686 G A ADRBK1 Missense_Mutation p.R69Q 0.11 deleterious(0.01) benign(0.025) TCGA-F5-6814-01 11 67354107 67354107 A C GSTP1 3'UTR 0.45 TCGA-F5-6814-01 11 67379914 67379914 G A NDUFV1 Silent p.R460R 0.16 TCGA-F5-6814-01 11 67431922 67431922 A C ALDH3B2 Missense_Mutation p.F273C 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-F5-6814-01 11 68355458 68355458 G A PPP6R3 Missense_Mutation p.D566N 0.35 deleterious(0.01) possibly_damaging(0.847) TCGA-F5-6814-01 11 68458532 68458532 T G GAL 3'UTR 0.31 TCGA-F5-6814-01 11 68514690 68514690 C A MTL5 Missense_Mutation p.D206Y 0.29 tolerated(0.07) benign(0.111) TCGA-F5-6814-01 11 69482348 69482348 G A ORAOV1 Missense_Mutation p.S118L 0.11 deleterious(0) possibly_damaging(0.848) TCGA-F5-6814-01 11 69951890 69951890 C T ANO1 Missense_Mutation p.T248M 0.11 deleterious(0) possibly_damaging(0.635) TCGA-F5-6814-01 11 70002071 70002071 A G ANO1 Missense_Mutation p.T494A 0.18 tolerated(0.33) benign(0.172) TCGA-F5-6814-01 11 70007813 70007813 C A ANO1 Silent p.I622I 0.36 TCGA-F5-6814-01 11 70049577 70049577 C T FADD Silent p.F4F 0.27 TCGA-F5-6814-01 11 70118309 70118309 G A PPFIA1 Missense_Mutation p.E11K 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 7021632 7021632 T G ZNF214 Missense_Mutation p.N428H 0.20 tolerated(0.09) benign(0.16) TCGA-F5-6814-01 11 70319046 70319046 G A SHANK2 Silent p.I1827I 0.46 TCGA-F5-6814-01 11 70319126 70319126 A C SHANK2 Missense_Mutation p.L1801V 0.10 deleterious(0) possibly_damaging(0.694) TCGA-F5-6814-01 11 7064273 7064273 T C NLRP14 Missense_Mutation p.I339T 0.16 deleterious(0) probably_damaging(0.957) TCGA-F5-6814-01 11 7067926 7067926 G A NLRP14 Nonsense_Mutation p.W662* 0.18 TCGA-F5-6814-01 11 7067932 7067932 T C NLRP14 Silent p.D664D 0.18 TCGA-F5-6814-01 11 7111860 7111860 C A RBMXL2 3'UTR 0.28 TCGA-F5-6814-01 11 71150099 71150099 G T DHCR7 Nonsense_Mutation p.Y219* 0.12 TCGA-F5-6814-01 11 71277236 71277236 G T KRTAP5-10 Missense_Mutation p.K201N 0.20 unknown(0) TCGA-F5-6814-01 11 71293764 71293764 G A KRTAP5-11 Silent p.C40C 0.31 TCGA-F5-6814-01 11 71548545 71548545 A C DEFB108B Missense_Mutation p.Q53H 0.15 tolerated(0.25) benign(0) TCGA-F5-6814-01 11 71727555 71727555 C T NUMA1 Missense_Mutation p.E381K 0.28 probably_damaging(0.941) TCGA-F5-6814-01 11 71806631 71806631 T A LRTOMT Intron 0.40 TCGA-F5-6814-01 11 71952289 71952289 G A PHOX2A Missense_Mutation p.R88C 0.32 deleterious(0) benign(0.428) TCGA-F5-6814-01 11 72379401 72379401 C T PDE2A Intron 0.30 TCGA-F5-6814-01 11 73008706 73008706 C A P2RY6 3'UTR 0.57 TCGA-F5-6814-01 11 7335019 7335019 C T SYT9 Silent p.D297D 0.36 TCGA-F5-6814-01 11 73669422 73669422 G T DNAJB13 Missense_Mutation p.E43D 0.42 tolerated(0.26) benign(0.008) TCGA-F5-6814-01 11 73914786 73914786 C T PPME1 Missense_Mutation p.R39W 0.33 deleterious(0) probably_damaging(0.947) TCGA-F5-6814-01 11 73988121 73988121 C T P4HA3 Missense_Mutation p.G415D 0.47 deleterious(0) possibly_damaging(0.882) TCGA-F5-6814-01 11 73996970 73996970 G T P4HA3 Missense_Mutation p.L332M 0.41 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 7437363 7437363 T G SYT9 Missense_Mutation p.L379V 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 11 74985158 74985158 T G ARRB1 Missense_Mutation p.K292Q 0.20 tolerated(0.23) benign(0.029) TCGA-F5-6814-01 11 75277917 75277917 G A SERPINH1 Missense_Mutation p.E175K 0.43 tolerated(0.12) possibly_damaging(0.818) TCGA-F5-6814-01 11 75563004 75563004 A G UVRAG Missense_Mutation p.Y65C 0.11 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 11 76063455 76063455 G A PRKRIR Nonsense_Mutation p.R247* 0.24 TCGA-F5-6814-01 11 76158035 76158035 G T C11orf30 Missense_Mutation p.R18I 0.25 deleterious_low_confidence(0) benign(0.311) TCGA-F5-6814-01 11 76234318 76234318 A C C11orf30 Missense_Mutation p.T602P 0.10 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 11 7663537 7663537 G T PPFIBP2 Missense_Mutation p.R509I 0.40 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 11 7674305 7674305 C T PPFIBP2 Silent p.F829F 0.15 TCGA-F5-6814-01 11 76891474 76891474 C T MYO7A Missense_Mutation p.R881W 0.40 deleterious(0) possibly_damaging(0.595) TCGA-F5-6814-01 11 76944216 76944216 C A GDPD4 Missense_Mutation p.D415Y 0.19 deleterious(0.03) benign(0.067) TCGA-F5-6814-01 11 7718032 7718032 G T OVCH2 Missense_Mutation p.S374Y 0.27 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 11 7723768 7723768 G T OVCH2 Missense_Mutation p.F133L 0.22 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 11 77412626 77412626 G T RSF1 Missense_Mutation p.L550I 0.30 tolerated_low_confidence(0.35) benign(0.242) TCGA-F5-6814-01 11 77618802 77618802 G T INTS4 Missense_Mutation p.F659L 0.22 tolerated(0.5) benign(0.032) TCGA-F5-6814-01 11 77671412 77671412 T G INTS4 Missense_Mutation p.K228T 0.37 deleterious(0.02) possibly_damaging(0.683) TCGA-F5-6814-01 11 78380640 78380640 G A TENM4 Silent p.D2250D 0.33 TCGA-F5-6814-01 11 78419526 78419526 G A TENM4 Silent p.F1363F 0.32 TCGA-F5-6814-01 11 78423578 78423578 G A TENM4 Missense_Mutation p.R1335C 0.23 deleterious(0) benign(0.107) TCGA-F5-6814-01 11 7949332 7949332 C T OR10A6 Missense_Mutation p.R293Q 0.41 deleterious(0) benign(0.119) TCGA-F5-6814-01 11 7950157 7950157 G T OR10A6 Missense_Mutation p.S18Y 0.37 deleterious(0.01) benign(0.386) TCGA-F5-6814-01 11 7960469 7960469 A C OR10A3 Missense_Mutation p.F200C 0.34 deleterious(0.02) probably_damaging(0.954) TCGA-F5-6814-01 11 7960790 7960790 G T OR10A3 Missense_Mutation p.S93Y 0.27 deleterious(0) possibly_damaging(0.495) TCGA-F5-6814-01 11 7984764 7984764 A C NLRP10 Missense_Mutation p.I93M 0.25 deleterious(0.01) possibly_damaging(0.459) TCGA-F5-6814-01 11 8119295 8119295 G T TUB Missense_Mutation p.S362I 0.33 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 11 8123053 8123053 T C TUB Missense_Mutation p.F525L 0.29 deleterious(0) benign(0.029) TCGA-F5-6814-01 11 8123143 8123143 G A TUB Missense_Mutation p.D555N 0.44 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 11 82643263 82643263 T C C11orf82 Missense_Mutation p.S295P 0.14 deleterious(0.03) benign(0.132) TCGA-F5-6814-01 11 82877031 82877031 G A PCF11 Silent p.S364S 0.32 TCGA-F5-6814-01 11 82877101 82877101 G T PCF11 Nonsense_Mutation p.E388* 0.35 TCGA-F5-6814-01 11 82877254 82877254 G A PCF11 Missense_Mutation p.E439K 0.09 deleterious(0.01) possibly_damaging(0.895) TCGA-F5-6814-01 11 82877453 82877453 G A PCF11 Missense_Mutation p.R505Q 0.10 tolerated(0.09) possibly_damaging(0.791) TCGA-F5-6814-01 11 82878336 82878336 G T PCF11 Nonsense_Mutation p.E663* 0.31 TCGA-F5-6814-01 11 82880957 82880957 A C PCF11 Missense_Mutation p.N1194H 0.41 tolerated(0.13) possibly_damaging(0.801) TCGA-F5-6814-01 11 82958995 82958995 G T ANKRD42 Missense_Mutation p.K374N 0.50 tolerated_low_confidence(0.15) benign(0.027) TCGA-F5-6814-01 11 8435195 8435195 C A STK33 Missense_Mutation p.M397I 0.45 deleterious(0.01) benign(0.354) TCGA-F5-6814-01 11 84865612 84865612 A C DLG2 Missense_Mutation p.D90E 0.35 tolerated_low_confidence(1) benign(0) TCGA-F5-6814-01 11 84865696 84865696 C T DLG2 Splice_Site p.X63_splice 0.12 TCGA-F5-6814-01 11 84996303 84996303 A G DLG2 Silent p.L49L 0.26 TCGA-F5-6814-01 11 85375037 85375037 G A CREBZF Missense_Mutation p.L295F 0.36 tolerated(0.11) probably_damaging(0.994) TCGA-F5-6814-01 11 85445104 85445104 G T SYTL2 Missense_Mutation p.S422Y 0.30 deleterious(0.01) possibly_damaging(0.62) TCGA-F5-6814-01 11 85445306 85445306 C A SYTL2 Nonsense_Mutation p.E355* 0.34 TCGA-F5-6814-01 11 85456764 85456764 T G SYTL2 Missense_Mutation p.N102T 0.11 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 11 85692192 85692192 C T PICALM Missense_Mutation p.A587T 0.24 tolerated(0.81) benign(0.001) TCGA-F5-6814-01 11 86097153 86097153 A G CCDC81 Missense_Mutation p.K47R 0.37 tolerated(0.1) probably_damaging(0.996) TCGA-F5-6814-01 11 86126230 86126230 A C CCDC81 Missense_Mutation p.Q522H 0.36 deleterious(0.05) benign(0.005) TCGA-F5-6814-01 11 86520085 86520085 A C PRSS23 3'UTR 0.10 TCGA-F5-6814-01 11 86521269 86521269 G T PRSS23 3'UTR 0.15 TCGA-F5-6814-01 11 86521867 86521867 G T PRSS23 3'UTR 0.35 TCGA-F5-6814-01 11 86521957 86521957 G T PRSS23 3'UTR 0.35 TCGA-F5-6814-01 11 86665858 86665858 G T FZD4 Nonsense_Mutation p.C90* 0.39 TCGA-F5-6814-01 11 87013431 87013431 A C TMEM135 Missense_Mutation p.E215D 0.32 tolerated(0.4) benign(0.002) TCGA-F5-6814-01 11 88300672 88300672 G A GRM5 Nonsense_Mutation p.R727* 0.34 TCGA-F5-6814-01 11 88330444 88330444 C T GRM5 Missense_Mutation p.E491K 0.37 tolerated(0.92) benign(0.2) TCGA-F5-6814-01 11 88330489 88330489 T G GRM5 Missense_Mutation p.K476Q 0.08 tolerated(0.37) benign(0.075) TCGA-F5-6814-01 11 88717981 88717981 C T GRM5 Intron 0.33 TCGA-F5-6814-01 11 88742247 88742247 T G GRM5 Intron 0.33 TCGA-F5-6814-01 11 88780420 88780420 C T GRM5 Silent p.K207K 0.31 TCGA-F5-6814-01 11 88911394 88911394 C T TYR Silent p.C91C 0.19 TCGA-F5-6814-01 11 88911522 88911522 T G TYR Missense_Mutation p.F134C 0.45 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 11 89443804 89443804 T G TRIM77 Missense_Mutation p.F113C 0.41 deleterious(0.03) possibly_damaging(0.717) TCGA-F5-6814-01 11 89444671 89444671 G T TRIM77 Nonsense_Mutation p.E169* 0.37 TCGA-F5-6814-01 11 89447514 89447514 A C TRIM77 Missense_Mutation p.K221T 0.15 tolerated(0.18) benign(0.04) TCGA-F5-6814-01 11 89531757 89531757 G T TRIM49 Silent p.I300I 0.40 TCGA-F5-6814-01 11 89537627 89537627 C A TRIM49 Missense_Mutation p.G4V 0.12 tolerated(0.38) benign(0.072) TCGA-F5-6814-01 11 89939384 89939384 A G CHORDC1 Silent p.P183P 0.25 TCGA-F5-6814-01 11 9069074 9069074 C T SCUBE2 Missense_Mutation p.E611K 0.26 tolerated(0.05) possibly_damaging(0.532) TCGA-F5-6814-01 11 92085352 92085352 T G FAT3 Missense_Mutation p.L25R 0.31 possibly_damaging(0.467) TCGA-F5-6814-01 11 92523207 92523207 G A FAT3 Silent p.E1478E 0.31 TCGA-F5-6814-01 11 92533918 92533918 G T FAT3 Missense_Mutation p.R2580I 0.11 probably_damaging(0.962) TCGA-F5-6814-01 11 92592427 92592427 G A FAT3 Missense_Mutation p.R3866Q 0.17 probably_damaging(0.999) TCGA-F5-6814-01 11 92881964 92881964 G A SLC36A4 Silent p.F418F 0.33 TCGA-F5-6814-01 11 9305111 9305111 T G TMEM41B Missense_Mutation p.K246Q 0.44 tolerated(1) benign(0.007) TCGA-F5-6814-01 11 93399961 93399961 C T KIAA1731 Nonsense_Mutation p.R30* 0.40 TCGA-F5-6814-01 11 93454506 93454506 T C KIAA1731 Silent p.N1926N 0.44 TCGA-F5-6814-01 11 93463597 93463597 T C KIAA1731 3'Flank 0.30 TCGA-F5-6814-01 11 93806289 93806289 G T HEPHL1 Missense_Mutation p.R444I 0.23 deleterious(0.01) possibly_damaging(0.625) TCGA-F5-6814-01 11 93837813 93837813 G T HEPHL1 Missense_Mutation p.E934D 0.39 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 11 94153279 94153279 C T MRE11A 3'UTR 0.08 TCGA-F5-6814-01 11 94278066 94278066 A C FUT4 Missense_Mutation p.Q256P 0.40 tolerated_low_confidence(0.2) benign(0.005) TCGA-F5-6814-01 11 94279314 94279314 A C FUT4 3'UTR 0.14 TCGA-F5-6814-01 11 94354117 94354117 G T PIWIL4 Nonsense_Mutation p.E840* 0.33 TCGA-F5-6814-01 11 9442041 9442041 A C IPO7 Missense_Mutation p.R270S 0.25 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 11 94564706 94564706 G T AMOTL1 Missense_Mutation p.Q549H 0.10 deleterious(0) possibly_damaging(0.851) TCGA-F5-6814-01 11 94731508 94731508 C T KDM4D Silent p.F324F 0.35 TCGA-F5-6814-01 11 94731899 94731899 C T KDM4D Missense_Mutation p.R455C 0.30 tolerated_low_confidence(0.07) benign(0.221) TCGA-F5-6814-01 11 94801150 94801150 C T SRSF8 Missense_Mutation p.P254S 0.35 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 11 94801750 94801750 T A SRSF8 3'UTR 0.13 TCGA-F5-6814-01 11 94918562 94918562 A T SESN3 Missense_Mutation p.V207D 0.32 deleterious(0) probably_damaging(0.946) TCGA-F5-6814-01 11 9496096 9496096 G A ZNF143 Splice_Site p.X97_splice 0.08 TCGA-F5-6814-01 11 9522663 9522663 C T ZNF143 Silent p.F331F 0.36 TCGA-F5-6814-01 11 95551017 95551017 C A CEP57 Missense_Mutation p.L191I 0.26 tolerated(0.24) probably_damaging(0.997) TCGA-F5-6814-01 11 95561037 95561037 C T CEP57 Nonsense_Mutation p.R325* 0.40 TCGA-F5-6814-01 11 9598152 9598152 G A WEE1 Missense_Mutation p.G322E 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 11 96117264 96117264 A G CCDC82 Silent p.D216D 0.10 TCGA-F5-6814-01 11 96124291 96124291 C T JRKL Nonsense_Mutation p.R160* 0.35 TCGA-F5-6814-01 11 96125218 96125218 G T JRKL Nonsense_Mutation p.E469* 0.30 TCGA-F5-6814-01 11 9761746 9761746 G T SWAP70 Nonsense_Mutation p.E403* 0.50 TCGA-F5-6814-01 11 9871600 9871600 G T SBF2 Missense_Mutation p.L926I 0.13 tolerated(1) benign(0.002) TCGA-F5-6814-01 11 9990001 9990001 A C SBF2 Missense_Mutation p.I496S 0.12 deleterious(0) benign(0.439) TCGA-F5-6814-01 11 99944876 99944876 C T CNTN5 Missense_Mutation p.A477V 0.31 deleterious(0) possibly_damaging(0.855) TCGA-F5-6814-01 12 100041921 100041921 C T FAM71C 5'UTR 0.44 TCGA-F5-6814-01 12 100042270 100042270 A C FAM71C Missense_Mutation p.K106N 0.19 tolerated(0.22) benign(0.002) TCGA-F5-6814-01 12 100048987 100048987 C A ANKS1B Missense_Mutation p.R377I 0.35 tolerated(0.07) benign(0.021) TCGA-F5-6814-01 12 10007025 10007025 T G CLEC2B Missense_Mutation p.K99T 0.33 deleterious(0.02) benign(0.035) TCGA-F5-6814-01 12 1003734 1003734 A C WNK1 Missense_Mutation p.Q1839P 0.11 deleterious_low_confidence(0.02) benign(0.029) TCGA-F5-6814-01 12 100444045 100444045 G A UHRF1BP1L Nonsense_Mutation p.R1207* 0.29 TCGA-F5-6814-01 12 100444890 100444890 A C UHRF1BP1L Missense_Mutation p.N1178K 0.15 tolerated(0.1) benign(0.06) TCGA-F5-6814-01 12 10069399 10069399 A C CLEC2A Missense_Mutation p.F104V 0.18 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 12 100707206 100707206 C T SCYL2 Missense_Mutation p.R287C 0.16 tolerated(0.12) benign(0.022) TCGA-F5-6814-01 12 10074730 10074730 C T CLEC2A Missense_Mutation p.A81T 0.09 tolerated(0.39) possibly_damaging(0.574) TCGA-F5-6814-01 12 100751200 100751200 G T SLC17A8 Nonsense_Mutation p.E11* 0.11 TCGA-F5-6814-01 12 100904728 100904728 A G NR1H4 Silent p.G94G 0.08 TCGA-F5-6814-01 12 101017371 101017371 T C GAS2L3 Missense_Mutation p.V263A 0.19 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 101017710 101017710 C A GAS2L3 Missense_Mutation p.S376Y 0.40 deleterious(0) possibly_damaging(0.868) TCGA-F5-6814-01 12 101017901 101017901 A G GAS2L3 Missense_Mutation p.N440D 0.28 tolerated(1) benign(0) TCGA-F5-6814-01 12 10132004 10132004 G T CLEC12A Missense_Mutation p.R97I 0.30 deleterious(0.01) probably_damaging(0.975) TCGA-F5-6814-01 12 10133302 10133302 C T CLEC12A Silent p.S177S 0.34 TCGA-F5-6814-01 12 101504262 101504262 G T ANO4 Nonsense_Mutation p.E709* 0.19 TCGA-F5-6814-01 12 101551015 101551015 A C SLC5A8 3'UTR 0.08 TCGA-F5-6814-01 12 101552062 101552062 C A SLC5A8 Nonsense_Mutation p.E559* 0.31 TCGA-F5-6814-01 12 101728270 101728270 G A UTP20 Missense_Mutation p.S1210N 0.45 deleterious(0) possibly_damaging(0.653) TCGA-F5-6814-01 12 101801527 101801527 C T ARL1 5'UTR 0.38 TCGA-F5-6814-01 12 101870612 101870612 C A SPIC 5'UTR 0.29 TCGA-F5-6814-01 12 102040570 102040570 G T MYBPC1 Missense_Mutation p.R307I 0.27 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 102043054 102043054 G T MYBPC1 Nonsense_Mutation p.E380* 0.29 TCGA-F5-6814-01 12 102117516 102117516 A G CHPT1 Missense_Mutation p.K319R 0.17 tolerated(0.15) possibly_damaging(0.452) TCGA-F5-6814-01 12 102122603 102122603 G T SYCP3 3'UTR 0.34 TCGA-F5-6814-01 12 102133176 102133176 G A SYCP3 5'UTR 0.14 TCGA-F5-6814-01 12 10279178 10279178 T C CLEC7A Missense_Mutation p.K111R 0.32 tolerated(0.24) benign(0.002) TCGA-F5-6814-01 12 10319308 10319308 T C OLR1 Intron 0.12 TCGA-F5-6814-01 12 103237474 103237474 C T PAH Silent p.Q383Q 0.17 TCGA-F5-6814-01 12 103248938 103248938 C T PAH Missense_Mutation p.E228K 0.21 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 12 103249076 103249076 C T PAH Missense_Mutation p.E182K 0.31 deleterious(0.02) benign(0.227) TCGA-F5-6814-01 12 10332067 10332067 T G TMEM52B 5'UTR 0.25 TCGA-F5-6814-01 12 10332194 10332194 C T TMEM52B Missense_Mutation p.S2L 0.61 deleterious_low_confidence(0) benign(0.001) TCGA-F5-6814-01 12 104031929 104031929 A G STAB2 Missense_Mutation p.Q282R 0.36 deleterious(0.01) possibly_damaging(0.796) TCGA-F5-6814-01 12 104098388 104098388 C A STAB2 Missense_Mutation p.S1299Y 0.39 deleterious(0.02) benign(0.081) TCGA-F5-6814-01 12 104182672 104182672 C T NT5DC3 Missense_Mutation p.G349S 0.18 tolerated(0.11) probably_damaging(0.996) TCGA-F5-6814-01 12 104341158 104341158 G A HSP90B1 Missense_Mutation p.E778K 0.34 tolerated(0.07) unknown(0) TCGA-F5-6814-01 12 104517154 104517154 G T NFYB Missense_Mutation p.F93L 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 12 10460580 10460580 C A KLRD1 5'UTR 0.58 TCGA-F5-6814-01 12 104698100 104698100 A C EID3 Missense_Mutation p.N130H 0.35 tolerated(0.07) possibly_damaging(0.464) TCGA-F5-6814-01 12 104715083 104715083 G A TXNRD1 Missense_Mutation p.V402I 0.21 tolerated(0.3) benign(0.016) TCGA-F5-6814-01 12 105150958 105150958 G A CHST11 Missense_Mutation p.D146N 0.18 tolerated(0.07) benign(0.127) TCGA-F5-6814-01 12 105151374 105151374 G T CHST11 Missense_Mutation p.E284D 0.38 tolerated(0.12) benign(0.015) TCGA-F5-6814-01 12 105280088 105280088 C A SLC41A2 Missense_Mutation p.G337V 0.17 tolerated(0.5) possibly_damaging(0.839) TCGA-F5-6814-01 12 105446604 105446604 G T ALDH1L2 Missense_Mutation p.P465T 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-F5-6814-01 12 105460364 105460364 C A ALDH1L2 Missense_Mutation p.Q226H 0.08 tolerated_low_confidence(0.22) possibly_damaging(0.759) TCGA-F5-6814-01 12 105540860 105540860 C A KIAA1033 Missense_Mutation p.T817N 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 105760394 105760394 G A C12orf75 Splice_Site p.X36_splice 0.22 TCGA-F5-6814-01 12 106634007 106634007 C T CKAP4 Missense_Mutation p.E202K 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 106729449 106729449 G T TCP11L2 Nonsense_Mutation p.E269* 0.36 TCGA-F5-6814-01 12 107075784 107075784 A G RFX4 Missense_Mutation p.Q119R 0.45 tolerated(0.48) benign(0.346) TCGA-F5-6814-01 12 107103204 107103204 C T RFX4 Silent p.F319F 0.24 TCGA-F5-6814-01 12 107236592 107236592 C A RIC8B Missense_Mutation p.D354E 0.38 tolerated(0.21) probably_damaging(0.998) TCGA-F5-6814-01 12 107371313 107371313 A C MTERFD3 3'Flank 0.27 TCGA-F5-6814-01 12 107371444 107371444 G A MTERFD3 Missense_Mutation p.A350V 0.30 tolerated(0.15) benign(0.008) TCGA-F5-6814-01 12 107391162 107391162 G T CRY1 Missense_Mutation p.L499I 0.24 tolerated(0.07) possibly_damaging(0.611) TCGA-F5-6814-01 12 107712687 107712687 C T BTBD11 5'UTR 0.41 TCGA-F5-6814-01 12 10783706 10783706 C T STYK1 Missense_Mutation p.R130Q 0.28 deleterious(0) probably_damaging(0.936) TCGA-F5-6814-01 12 10786625 10786625 C A STYK1 Nonsense_Mutation p.E51* 0.45 TCGA-F5-6814-01 12 108051361 108051361 G A BTBD11 Missense_Mutation p.E1061K 0.45 tolerated(0.06) possibly_damaging(0.738) TCGA-F5-6814-01 12 108128188 108128188 A C PRDM4 Missense_Mutation p.C735W 0.13 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 108138330 108138330 T G PRDM4 Missense_Mutation p.H462P 0.15 deleterious(0.01) benign(0.042) TCGA-F5-6814-01 12 108170012 108170012 G A ASCL4 3'UTR 0.21 TCGA-F5-6814-01 12 108685675 108685675 C A CMKLR1 Missense_Mutation p.K355N 0.39 tolerated(0.06) benign(0.011) TCGA-F5-6814-01 12 108919302 108919302 C A SART3 Nonsense_Mutation p.E819* 0.11 TCGA-F5-6814-01 12 108931910 108931910 T C SART3 Missense_Mutation p.T378A 0.24 tolerated(0.09) possibly_damaging(0.463) TCGA-F5-6814-01 12 108931957 108931957 T C SART3 Missense_Mutation p.D362G 0.36 deleterious(0.02) benign(0.418) TCGA-F5-6814-01 12 108932726 108932726 C T SART3 Missense_Mutation p.R349H 0.24 deleterious(0.02) probably_damaging(0.932) TCGA-F5-6814-01 12 108932754 108932754 T C SART3 Missense_Mutation p.N340D 0.28 deleterious(0.01) probably_damaging(0.985) TCGA-F5-6814-01 12 109052642 109052642 T G CORO1C Missense_Mutation p.N168H 0.13 tolerated(0.22) benign(0.016) TCGA-F5-6814-01 12 109192889 109192889 G A SSH1 Silent p.F412F 0.26 TCGA-F5-6814-01 12 109198857 109198857 G A SSH1 Missense_Mutation p.S310F 0.35 deleterious(0) probably_damaging(0.91) TCGA-F5-6814-01 12 109284009 109284009 A C DAO Missense_Mutation p.I138L 0.10 tolerated(0.78) benign(0.04) TCGA-F5-6814-01 12 10962765 10962765 G T TAS2R9 5'UTR 0.26 TCGA-F5-6814-01 12 109671628 109671628 C T ACACB Silent p.S1405S 0.27 TCGA-F5-6814-01 12 109678885 109678885 C T ACACB Silent p.I1607I 0.35 TCGA-F5-6814-01 12 109719527 109719527 C T FOXN4 Missense_Mutation p.V327M 0.33 tolerated(0.3) benign(0.012) TCGA-F5-6814-01 12 10978341 10978341 A C TAS2R10 Missense_Mutation p.I176M 0.12 deleterious(0.01) benign(0.297) TCGA-F5-6814-01 12 109826596 109826596 G A MYO1H Missense_Mutation p.E25K 0.26 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 109847415 109847415 C A MYO1H Silent p.V387V 0.14 TCGA-F5-6814-01 12 109849785 109849785 C T MYO1H Silent p.F483F 0.43 TCGA-F5-6814-01 12 109858790 109858790 C A MYO1H Missense_Mutation p.F518L 0.37 deleterious(0) benign(0.008) TCGA-F5-6814-01 12 109872873 109872873 C A MYO1H Missense_Mutation p.L683M 0.19 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 109877439 109877439 C A MYO1H Missense_Mutation p.F750L 0.29 tolerated(0.11) benign(0.2) TCGA-F5-6814-01 12 109877590 109877590 G A MYO1H Missense_Mutation p.E801K 0.19 tolerated(0.4) benign(0.22) TCGA-F5-6814-01 12 109921716 109921716 G T UBE3B Missense_Mutation p.R71I 0.18 tolerated(0.44) benign(0.001) TCGA-F5-6814-01 12 110246272 110246272 T C TRPV4 Missense_Mutation p.K130E 0.24 tolerated(0.42) benign(0.12) TCGA-F5-6814-01 12 110643418 110643418 C T IFT81 Missense_Mutation p.R579C 0.40 deleterious(0.04) benign(0.001) TCGA-F5-6814-01 12 110656078 110656078 A C IFT81 3'UTR 0.09 TCGA-F5-6814-01 12 110891571 110891571 C A GPN3 Missense_Mutation p.D296Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 11091449 11091449 G T TAS2R14 Missense_Mutation p.L120I 0.32 deleterious(0.04) benign(0.309) TCGA-F5-6814-01 12 111085098 111085098 T C TCTN1 Missense_Mutation p.I531T 0.09 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 12 111089030 111089030 A C HVCN1 Missense_Mutation p.I212S 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 111168518 111168518 G A PPP1CC Silent p.Y78Y 0.28 TCGA-F5-6814-01 12 11149542 11149542 A G TAS2R20 3'UTR 0.39 TCGA-F5-6814-01 12 111701628 111701628 T G CUX2 Missense_Mutation p.L96V 0.38 deleterious(0) possibly_damaging(0.786) TCGA-F5-6814-01 12 111734323 111734323 C T CUX2 Silent p.Y228Y 0.29 TCGA-F5-6814-01 12 11174569 11174569 G T TAS2R19 Missense_Mutation p.S201Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 12 11174920 11174920 G A TAS2R19 Missense_Mutation p.A84V 0.12 tolerated(1) benign(0.01) TCGA-F5-6814-01 12 111923113 111923113 G A ATXN2 Missense_Mutation p.T987M 0.50 possibly_damaging(0.899) TCGA-F5-6814-01 12 111947750 111947750 T G ATXN2 Missense_Mutation p.K763N 0.11 benign(0.222) TCGA-F5-6814-01 12 111990178 111990178 C T ATXN2 Silent p.P319P 0.42 TCGA-F5-6814-01 12 112183970 112183970 T G ACAD10 Missense_Mutation p.L744R 0.40 deleterious(0) benign(0.074) TCGA-F5-6814-01 12 112486159 112486159 G T NAA25 Missense_Mutation p.S606Y 0.54 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 112631389 112631389 A C HECTD4 Missense_Mutation p.Y2801D 0.15 probably_damaging(0.921) TCGA-F5-6814-01 12 112642301 112642301 T G HECTD4 Missense_Mutation p.K2607T 0.32 probably_damaging(0.994) TCGA-F5-6814-01 12 11286602 11286602 C A TAS2R30 Missense_Mutation p.R81I 0.43 tolerated(0.06) benign(0.317) TCGA-F5-6814-01 12 112891035 112891035 G T PTPN11 Missense_Mutation p.E123D 0.26 deleterious(0) benign(0.057) TCGA-F5-6814-01 12 112892439 112892439 G T PTPN11 Missense_Mutation p.K199N 0.09 tolerated(0.08) probably_damaging(0.992) TCGA-F5-6814-01 12 113325643 113325643 T G RPH3A Missense_Mutation p.F493C 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 113344972 113344972 A G OAS1 Missense_Mutation p.E43G 0.08 deleterious(0.03) possibly_damaging(0.898) TCGA-F5-6814-01 12 113433217 113433217 T A OAS2 Missense_Mutation p.F189I 0.28 tolerated(0.21) possibly_damaging(0.732) TCGA-F5-6814-01 12 113534691 113534691 G A DTX1 Missense_Mutation p.V604M 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 113596875 113596875 C T DDX54 Missense_Mutation p.R819Q 0.13 tolerated(0.12) benign(0.04) TCGA-F5-6814-01 12 113835134 113835134 G A SDS Silent p.I163I 0.29 TCGA-F5-6814-01 12 114385174 114385174 T G RBM19 Missense_Mutation p.K458Q 0.24 tolerated(0.11) benign(0.411) TCGA-F5-6814-01 12 114395841 114395841 C T RBM19 Missense_Mutation p.E196K 0.09 tolerated(0.28) benign(0.004) TCGA-F5-6814-01 12 11462323 11462323 T G PRB4 Missense_Mutation p.E27D 0.16 tolerated_low_confidence(0.13) unknown(0) TCGA-F5-6814-01 12 114793723 114793723 G A TBX5 Missense_Mutation p.P391S 0.25 tolerated(0.36) benign(0.343) TCGA-F5-6814-01 12 116399051 116399051 G T MED13L 3'UTR 0.24 TCGA-F5-6814-01 12 116434406 116434406 C T MED13L Silent p.P957P 0.37 TCGA-F5-6814-01 12 116446763 116446763 T C MED13L Missense_Mutation p.I485M 0.30 tolerated(0.3) unknown(0) TCGA-F5-6814-01 12 117014158 117014158 T G MAP1LC3B2 3'UTR 0.41 TCGA-F5-6814-01 12 117365873 117365873 G A FBXW8 Missense_Mutation p.E122K 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 117693821 117693821 G T NOS1 Missense_Mutation p.F851L 0.35 tolerated_low_confidence(0.65) benign(0.003) TCGA-F5-6814-01 12 117698325 117698325 G A NOS1 Missense_Mutation p.S771L 0.47 deleterious(0) possibly_damaging(0.904) TCGA-F5-6814-01 12 117962980 117962980 G A KSR2 Silent p.F632F 0.42 TCGA-F5-6814-01 12 118481115 118481115 T C WSB2 Missense_Mutation p.K84E 0.10 tolerated(0.88) benign(0.019) TCGA-F5-6814-01 12 118823943 118823943 G T SUDS3 Missense_Mutation p.R98I 0.20 deleterious(0.02) probably_damaging(0.939) TCGA-F5-6814-01 12 1192514 1192514 G A ERC1 Missense_Mutation p.R285Q 0.46 tolerated(0.08) probably_damaging(0.999) TCGA-F5-6814-01 12 119866488 119866488 G A CCDC60 Missense_Mutation p.V31I 0.12 tolerated(0.29) benign(0.025) TCGA-F5-6814-01 12 120151011 120151011 C A CIT Nonsense_Mutation p.E1526* 0.44 TCGA-F5-6814-01 12 120214576 120214576 C A CIT Missense_Mutation p.R579I 0.39 deleterious(0.02) benign(0.097) TCGA-F5-6814-01 12 120241084 120241084 T C CIT Silent p.S407S 0.12 TCGA-F5-6814-01 12 120546225 120546225 G A RAB35 Silent p.F33F 0.24 TCGA-F5-6814-01 12 120580676 120580676 T C GCN1L1 Silent p.T1855T 0.23 TCGA-F5-6814-01 12 120760025 120760025 G A PLA2G1B Silent p.L140L 0.12 TCGA-F5-6814-01 12 121098875 121098875 T C CABP1 Missense_Mutation p.F314S 0.13 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 12 121458319 121458319 C A OASL 3'UTR 0.53 TCGA-F5-6814-01 12 121972434 121972434 A G KDM2B Missense_Mutation p.S249P 0.10 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 12 122097229 122097229 C A MORN3 Missense_Mutation p.K57N 0.15 tolerated(0.26) benign(0.052) TCGA-F5-6814-01 12 122150853 122150853 G T TMEM120B Nonsense_Mutation p.E18* 0.20 TCGA-F5-6814-01 12 122287643 122287643 G T HPD Missense_Mutation p.F156L 0.15 deleterious(0) possibly_damaging(0.601) TCGA-F5-6814-01 12 12232607 12232607 A G BCL2L14 Missense_Mutation p.Q123R 0.29 tolerated(0.23) benign(0.01) TCGA-F5-6814-01 12 122359515 122359515 G T WDR66 Nonsense_Mutation p.E102* 0.22 TCGA-F5-6814-01 12 122369683 122369683 C A WDR66 Missense_Mutation p.S260Y 0.13 tolerated(0.08) benign(0.091) TCGA-F5-6814-01 12 122441614 122441614 G A WDR66 Missense_Mutation p.A1132T 0.11 tolerated(0.59) benign(0.025) TCGA-F5-6814-01 12 122657225 122657225 C T IL31 Missense_Mutation p.A77T 0.46 tolerated(0.19) benign(0.176) TCGA-F5-6814-01 12 122723167 122723167 T G VPS33A Missense_Mutation p.K423N 0.22 deleterious(0) possibly_damaging(0.898) TCGA-F5-6814-01 12 122825765 122825765 T C CLIP1 Silent p.Q662Q 0.21 TCGA-F5-6814-01 12 12284987 12284987 A C LRP6 Silent p.P1246P 0.19 TCGA-F5-6814-01 12 122958321 122958321 G A ZCCHC8 Missense_Mutation p.P616L 0.41 tolerated(0.08) benign(0.005) TCGA-F5-6814-01 12 122958410 122958410 A C ZCCHC8 Missense_Mutation p.I586M 0.35 tolerated(0.2) benign(0.033) TCGA-F5-6814-01 12 123032475 123032475 A C KNTC1 Missense_Mutation p.N316H 0.10 deleterious(0.02) probably_damaging(0.987) TCGA-F5-6814-01 12 123238336 123238336 C T DENR Nonsense_Mutation p.R30* 0.42 TCGA-F5-6814-01 12 123341739 123341739 T C HIP1R Silent p.L598L 0.14 TCGA-F5-6814-01 12 123473382 123473382 G A PITPNM2 Silent p.Y923Y 0.44 TCGA-F5-6814-01 12 123641375 123641375 C A MPHOSPH9 Missense_Mutation p.L1025F 0.14 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 123686721 123686721 G T MPHOSPH9 Missense_Mutation p.L491I 0.35 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 123686807 123686807 T C MPHOSPH9 Missense_Mutation p.Y462C 0.28 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 12 124071292 124071292 A G TMED2 Splice_Site p.X61_splice 0.27 TCGA-F5-6814-01 12 124239012 124239012 G A ATP6V0A2 Missense_Mutation p.E741K 0.14 deleterious(0) possibly_damaging(0.733) TCGA-F5-6814-01 12 124241507 124241507 G A ATP6V0A2 Silent p.A813A 0.38 TCGA-F5-6814-01 12 124256171 124256171 G A DNAH10 Missense_Mutation p.E47K 0.38 benign(0.001) TCGA-F5-6814-01 12 124265803 124265803 G A DNAH10 Silent p.Q205Q 0.32 TCGA-F5-6814-01 12 124272493 124272493 T C DNAH10 Missense_Mutation p.F461L 0.21 probably_damaging(0.999) TCGA-F5-6814-01 12 124288332 124288332 C A DNAH10 Silent p.L795L 0.12 TCGA-F5-6814-01 12 124289558 124289558 T G DNAH10 Missense_Mutation p.I868M 0.22 benign(0.259) TCGA-F5-6814-01 12 124293362 124293362 T A DNAH10 Missense_Mutation p.N884K 0.38 benign(0.002) TCGA-F5-6814-01 12 124303600 124303600 G T DNAH10 Missense_Mutation p.R1177I 0.44 benign(0.042) TCGA-F5-6814-01 12 124333390 124333390 G A DNAH10 Silent p.T1903T 0.39 TCGA-F5-6814-01 12 124350538 124350538 G A DNAH10 Missense_Mutation p.R2244Q 0.73 probably_damaging(0.923) TCGA-F5-6814-01 12 124356039 124356039 T G DNAH10 Missense_Mutation p.L2441V 0.38 possibly_damaging(0.865) TCGA-F5-6814-01 12 124358147 124358147 G A DNAH10 Missense_Mutation p.D2492N 0.24 possibly_damaging(0.905) TCGA-F5-6814-01 12 124358157 124358157 G T DNAH10 Missense_Mutation p.R2495I 0.37 possibly_damaging(0.619) TCGA-F5-6814-01 12 124359969 124359969 C A DNAH10 Missense_Mutation p.F2592L 0.24 possibly_damaging(0.737) TCGA-F5-6814-01 12 124377894 124377894 T C DNAH10 Missense_Mutation p.F2919S 0.29 probably_damaging(0.987) TCGA-F5-6814-01 12 124395196 124395196 G T DNAH10 Nonsense_Mutation p.E3253* 0.54 TCGA-F5-6814-01 12 124399470 124399470 G A DNAH10 Missense_Mutation p.R3431H 0.12 probably_damaging(0.999) TCGA-F5-6814-01 12 124417884 124417884 G A DNAH10 Missense_Mutation p.E4317K 0.50 benign(0.009) TCGA-F5-6814-01 12 124498886 124498886 C T ZNF664 3'UTR 0.27 TCGA-F5-6814-01 12 124838655 124838655 C T NCOR2 Missense_Mutation p.R1226H 0.38 probably_damaging(0.999) TCGA-F5-6814-01 12 124968222 124968222 C A NCOR2 Nonsense_Mutation p.E111* 0.17 TCGA-F5-6814-01 12 125609363 125609363 A C AACS Intron 0.41 TCGA-F5-6814-01 12 125626838 125626838 G T AACS 3'UTR 0.38 TCGA-F5-6814-01 12 125834025 125834025 G T TMEM132B Missense_Mutation p.S27I 0.12 deleterious(0.01) probably_damaging(0.945) TCGA-F5-6814-01 12 125834699 125834699 G A TMEM132B Missense_Mutation p.A252T 0.30 tolerated(0.4) benign(0.22) TCGA-F5-6814-01 12 126139041 126139041 G T TMEM132B Nonsense_Mutation p.E1008* 0.32 TCGA-F5-6814-01 12 130648622 130648622 G A FZD10 Missense_Mutation p.E379K 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 12 130650113 130650113 G T FZD10 3'UTR 0.53 TCGA-F5-6814-01 12 130830351 130830351 C T PIWIL1 Missense_Mutation p.R82C 0.43 deleterious(0.04) probably_damaging(0.97) TCGA-F5-6814-01 12 130833930 130833930 A C PIWIL1 Missense_Mutation p.K294T 0.16 tolerated(0.59) benign(0.01) TCGA-F5-6814-01 12 130833953 130833953 G T PIWIL1 Nonsense_Mutation p.E302* 0.30 TCGA-F5-6814-01 12 130841527 130841527 T C PIWIL1 Missense_Mutation p.V490A 0.52 tolerated(1) benign(0.001) TCGA-F5-6814-01 12 130892274 130892274 G A RIMBP2 Silent p.V974V 0.33 TCGA-F5-6814-01 12 130898786 130898786 C T RIMBP2 Missense_Mutation p.E846K 0.48 tolerated(0.15) benign(0.21) TCGA-F5-6814-01 12 130926553 130926553 G A RIMBP2 Silent p.I431I 0.41 TCGA-F5-6814-01 12 131276428 131276428 C T STX2 3'UTR 0.22 TCGA-F5-6814-01 12 131306238 131306238 T G STX2 Missense_Mutation p.E67D 0.24 tolerated(1) benign(0.03) TCGA-F5-6814-01 12 13211469 13211469 A G KIAA1467 Missense_Mutation p.N173S 0.41 deleterious(0.01) probably_damaging(0.942) TCGA-F5-6814-01 12 13221363 13221363 G T KIAA1467 Missense_Mutation p.R423I 0.35 deleterious(0.03) benign(0.036) TCGA-F5-6814-01 12 132334405 132334405 C A MMP17 Silent p.V421V 0.39 TCGA-F5-6814-01 12 13233590 13233590 G T KIAA1467 3'UTR 0.35 TCGA-F5-6814-01 12 132502761 132502761 G A EP400 Missense_Mutation p.D1373N 0.17 unknown(0) TCGA-F5-6814-01 12 132834244 132834244 C T GALNT9 Missense_Mutation p.E14K 0.31 tolerated(0.64) possibly_damaging(0.502) TCGA-F5-6814-01 12 133197624 133197624 A G P2RX2 Missense_Mutation p.D271G 0.45 deleterious(0) possibly_damaging(0.807) TCGA-F5-6814-01 12 133198355 133198355 G A P2RX2 Missense_Mutation p.E431K 0.40 tolerated(0.36) benign(0.019) TCGA-F5-6814-01 12 133253184 133253184 G C POLE Missense_Mutation p.P286R 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 133423717 133423717 C A CHFR Splice_Site p.X562_splice 0.43 TCGA-F5-6814-01 12 13367574 13367574 C A EMP1 Missense_Mutation p.F141L 0.45 deleterious(0.02) possibly_damaging(0.801) TCGA-F5-6814-01 12 133682657 133682657 G T ZNF140 Missense_Mutation p.R265I 0.35 deleterious(0.01) possibly_damaging(0.904) TCGA-F5-6814-01 12 133683077 133683077 G A ZNF140 Missense_Mutation p.R405K 0.29 tolerated(0.11) benign(0.042) TCGA-F5-6814-01 12 14591091 14591091 T G ATF7IP Missense_Mutation p.L607V 0.29 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-F5-6814-01 12 14659927 14659927 G A PLBD1 Missense_Mutation p.R438W 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 14975926 14975926 C A C12orf60 Missense_Mutation p.F19L 0.37 tolerated(0.21) benign(0.024) TCGA-F5-6814-01 12 14976358 14976358 G A C12orf60 Silent p.E163E 0.29 TCGA-F5-6814-01 12 14996014 14996014 G T ART4 Missense_Mutation p.L12I 0.22 deleterious_low_confidence(0.02) benign(0.405) TCGA-F5-6814-01 12 15073970 15073970 G C ERP27 Missense_Mutation p.Q116E 0.38 deleterious(0.01) benign(0.422) TCGA-F5-6814-01 12 15134451 15134451 A C PDE6H 3'UTR 0.08 TCGA-F5-6814-01 12 15654900 15654900 C T PTPRO Silent p.G336G 0.12 TCGA-F5-6814-01 12 15807150 15807150 G T EPS8 Missense_Mutation p.F393L 0.69 deleterious(0) possibly_damaging(0.561) TCGA-F5-6814-01 12 16189308 16189308 A G DERA Missense_Mutation p.E298G 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 16510603 16510603 G A MGST1 Missense_Mutation p.R64Q 0.29 tolerated(0.22) benign(0.006) TCGA-F5-6814-01 12 18650584 18650584 T C PIK3C2G Missense_Mutation p.V932A 0.34 tolerated(0.31) possibly_damaging(0.651) TCGA-F5-6814-01 12 18719914 18719914 A G PIK3C2G Missense_Mutation p.N1271D 0.08 tolerated(1) benign(0.019) TCGA-F5-6814-01 12 18841081 18841081 T G PLCZ1 Missense_Mutation p.E511D 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 18865799 18865799 C T PLCZ1 Missense_Mutation p.A231T 0.19 tolerated(0.97) benign(0.062) TCGA-F5-6814-01 12 18876309 18876309 A G PLCZ1 Silent p.Y101Y 0.09 TCGA-F5-6814-01 12 18876356 18876356 T G PLCZ1 Missense_Mutation p.I86L 0.10 tolerated(0.68) benign(0.018) TCGA-F5-6814-01 12 18891397 18891397 C T CAPZA3 Silent p.I65I 0.37 TCGA-F5-6814-01 12 1895413 1895413 A C ADIPOR2 3'UTR 0.60 TCGA-F5-6814-01 12 1920938 1920938 G T CACNA2D4 Intron 0.27 TCGA-F5-6814-01 12 1940526 1940526 G A LRTM2 Missense_Mutation p.A165T 0.30 tolerated(0.64) benign(0.099) TCGA-F5-6814-01 12 19671062 19671062 A C AEBP2 Intron 0.41 TCGA-F5-6814-01 12 1994173 1994173 C A CACNA2D4 Missense_Mutation p.A380S 0.36 tolerated(0.26) possibly_damaging(0.654) TCGA-F5-6814-01 12 2062038 2062038 G A DCP1B Silent p.F356F 0.23 TCGA-F5-6814-01 12 20803525 20803525 T G PDE3A Missense_Mutation p.F972L 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 20832992 20832992 C A PDE3A Silent p.I1071I 0.34 TCGA-F5-6814-01 12 20833154 20833154 G A PDE3A Silent p.E1125E 0.16 TCGA-F5-6814-01 12 20859004 20859004 C A SLCO1C1 Missense_Mutation p.F131L 0.37 deleterious(0.01) probably_damaging(0.98) TCGA-F5-6814-01 12 20890146 20890146 C A SLCO1C1 Silent p.I496I 0.38 TCGA-F5-6814-01 12 21007980 21007980 T C LST3 Missense_Mutation p.S35P 0.28 deleterious(0) probably_damaging(0.972) TCGA-F5-6814-01 12 21014046 21014046 G A SLCO1B3 Missense_Mutation p.G152E 0.18 tolerated(1) benign(0.002) TCGA-F5-6814-01 12 21168708 21168708 G A SLCO1B7 Missense_Mutation p.E27K 0.32 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 12 21355576 21355576 C T SLCO1B1 Silent p.L429L 0.46 TCGA-F5-6814-01 12 21598283 21598283 T G PYROXD1 Missense_Mutation p.I56M 0.06 deleterious(0.01) possibly_damaging(0.629) TCGA-F5-6814-01 12 21608206 21608206 G T PYROXD1 Missense_Mutation p.R210I 0.37 deleterious(0) probably_damaging(0.949) TCGA-F5-6814-01 12 21661485 21661485 C A GOLT1B Missense_Mutation p.L96I 0.31 tolerated(0.39) possibly_damaging(0.544) TCGA-F5-6814-01 12 21668746 21668746 C A GOLT1B 3'UTR 0.33 TCGA-F5-6814-01 12 21954006 21954006 A G ABCC9 Missense_Mutation p.F1541S 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 21960335 21960335 C T ABCC9 Missense_Mutation p.R1465H 0.35 deleterious(0) probably_damaging(0.925) TCGA-F5-6814-01 12 21997827 21997827 C A ABCC9 Missense_Mutation p.S1040I 0.25 tolerated(0.13) benign(0.005) TCGA-F5-6814-01 12 22068622 22068622 C A ABCC9 Missense_Mutation p.D266Y 0.12 deleterious(0.01) benign(0.353) TCGA-F5-6814-01 12 22214345 22214345 G T CMAS Missense_Mutation p.D307Y 0.14 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 12 22624403 22624403 C T C2CD5 Missense_Mutation p.R763Q 0.26 deleterious(0) benign(0.371) TCGA-F5-6814-01 12 24736370 24736370 G A LINC00477 RNA 0.19 TCGA-F5-6814-01 12 24736386 24736386 G A LINC00477 RNA 0.19 TCGA-F5-6814-01 12 25031583 25031583 C T BCAT1 Missense_Mutation p.V143I 0.37 tolerated(0.11) benign(0.012) TCGA-F5-6814-01 12 25263121 25263121 A C CASC1 Silent p.A611A 0.09 TCGA-F5-6814-01 12 2558263 2558263 T G CACNA1C Missense_Mutation p.F200C 0.09 deleterious(0) probably_damaging(0.972) TCGA-F5-6814-01 12 25679847 25679847 A C IFLTD1 Silent p.G178G 0.17 TCGA-F5-6814-01 12 25679885 25679885 G T IFLTD1 Missense_Mutation p.L166I 0.20 tolerated(0.14) possibly_damaging(0.612) TCGA-F5-6814-01 12 2613658 2613658 C A CACNA1C Intron 0.08 TCGA-F5-6814-01 12 26217971 26217971 G T RASSF8 Missense_Mutation p.R215I 0.13 deleterious(0.01) possibly_damaging(0.548) TCGA-F5-6814-01 12 26277744 26277744 T G BHLHE41 5'UTR 0.33 TCGA-F5-6814-01 12 26377305 26377305 C A SSPN Missense_Mutation p.S120Y 0.37 deleterious(0.02) benign(0.087) TCGA-F5-6814-01 12 26580976 26580976 G A ITPR2 Missense_Mutation p.A2272V 0.36 tolerated(0.23) benign(0.029) TCGA-F5-6814-01 12 26640014 26640014 A G ITPR2 Silent p.G1847G 0.10 TCGA-F5-6814-01 12 26809386 26809386 C T ITPR2 Missense_Mutation p.R763Q 0.18 tolerated(0.28) possibly_damaging(0.82) TCGA-F5-6814-01 12 26868343 26868343 C A ITPR2 Missense_Mutation p.E248D 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 2692013 2692013 C T CACNA1C Missense_Mutation p.S710L 0.18 deleterious(0.04) possibly_damaging(0.592) TCGA-F5-6814-01 12 2714868 2714868 C T CACNA1C Silent p.V1044V 0.26 TCGA-F5-6814-01 12 2719811 2719811 C T CACNA1C Silent p.F1241F 0.28 TCGA-F5-6814-01 12 274617 274617 G A IQSEC3 Silent p.P909P 0.33 TCGA-F5-6814-01 12 27538426 27538426 C A ARNTL2 Missense_Mutation p.S166Y 0.29 deleterious(0.01) possibly_damaging(0.563) TCGA-F5-6814-01 12 27628608 27628608 G A SMCO2 Silent p.T152T 0.36 TCGA-F5-6814-01 12 27817316 27817316 C T PPFIBP1 Nonsense_Mutation p.R330* 0.35 TCGA-F5-6814-01 12 27829514 27829514 G C PPFIBP1 Missense_Mutation p.A539P 0.26 deleterious(0.02) possibly_damaging(0.673) TCGA-F5-6814-01 12 2786327 2786327 G T CACNA1C Missense_Mutation p.K1680N 0.29 deleterious(0.01) possibly_damaging(0.893) TCGA-F5-6814-01 12 27916005 27916005 T G MANSC4 Missense_Mutation p.K230T 0.09 tolerated(0.07) possibly_damaging(0.9) TCGA-F5-6814-01 12 27950754 27950754 G A KLHL42 Silent p.E391E 0.35 TCGA-F5-6814-01 12 27951028 27951028 C T KLHL42 Missense_Mutation p.R483W 0.21 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 12 28116332 28116332 T G PTHLH Missense_Mutation p.E158A 0.15 tolerated_low_confidence(0.5) benign(0.002) TCGA-F5-6814-01 12 28460674 28460674 G A CCDC91 Missense_Mutation p.E190K 0.08 tolerated(0.57) possibly_damaging(0.775) TCGA-F5-6814-01 12 2910452 2910452 G A FKBP4 Missense_Mutation p.R401Q 0.63 deleterious(0.01) possibly_damaging(0.63) TCGA-F5-6814-01 12 29498462 29498462 A G ERGIC2 Missense_Mutation p.F247L 0.32 deleterious(0.01) possibly_damaging(0.731) TCGA-F5-6814-01 12 29502022 29502022 A G ERGIC2 Silent p.I239I 0.24 TCGA-F5-6814-01 12 29639259 29639259 G T OVCH1 Silent p.L305L 0.35 TCGA-F5-6814-01 12 2973870 2973870 T C FOXM1 Missense_Mutation p.T357A 0.16 tolerated(0.13) benign(0.024) TCGA-F5-6814-01 12 304403 304403 T G SLC6A12 Missense_Mutation p.S473R 0.33 deleterious(0) possibly_damaging(0.664) TCGA-F5-6814-01 12 30792635 30792635 C A IPO8 Missense_Mutation p.R768I 0.37 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 12 30876240 30876240 C A CAPRIN2 Nonsense_Mutation p.E666* 0.24 TCGA-F5-6814-01 12 30882149 30882149 A G CAPRIN2 Silent p.D405D 0.19 TCGA-F5-6814-01 12 30906302 30906302 T G CAPRIN2 Missense_Mutation p.K132N 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 31540491 31540491 T A DENND5B 3'UTR 0.22 TCGA-F5-6814-01 12 31555440 31555440 T C DENND5B Missense_Mutation p.T981A 0.34 tolerated(0.25) benign(0.031) TCGA-F5-6814-01 12 31562284 31562284 C T DENND5B Missense_Mutation p.E906K 0.17 deleterious(0.01) benign(0.442) TCGA-F5-6814-01 12 31586181 31586181 G A DENND5B Missense_Mutation p.R672C 0.31 deleterious(0) probably_damaging(0.915) TCGA-F5-6814-01 12 31814825 31814825 C T METTL20 5'UTR 0.14 TCGA-F5-6814-01 12 31862268 31862268 T G AMN1 Missense_Mutation p.M44L 0.19 tolerated(0.14) benign(0.021) TCGA-F5-6814-01 12 31945119 31945119 G A H3F3C 5'UTR 0.40 TCGA-F5-6814-01 12 32134762 32134762 G A KIAA1551 Silent p.L291L 0.38 TCGA-F5-6814-01 12 32135790 32135790 C T KIAA1551 Missense_Mutation p.T634I 0.23 tolerated(0.37) benign(0.054) TCGA-F5-6814-01 12 3659179 3659179 A C PRMT8 Missense_Mutation p.K113N 0.08 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 3678651 3678651 A C PRMT8 Silent p.G211G 0.11 TCGA-F5-6814-01 12 39170104 39170104 C T CPNE8 Splice_Site p.X136_splice 0.47 TCGA-F5-6814-01 12 395355 395355 C T KDM5A Intron 0.15 TCGA-F5-6814-01 12 39701481 39701481 C T KIF21A Missense_Mutation p.R1443Q 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 12 39726183 39726183 C A KIF21A Nonsense_Mutation p.E962* 0.39 TCGA-F5-6814-01 12 39760833 39760833 G A KIF21A Missense_Mutation p.A245V 0.34 tolerated(0.28) benign(0.099) TCGA-F5-6814-01 12 40012681 40012681 G T ABCD2 Missense_Mutation p.A246D 0.25 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 12 40040656 40040656 G T C12orf40 Missense_Mutation p.R117I 0.33 tolerated(0.05) benign(0.439) TCGA-F5-6814-01 12 40076498 40076498 G A C12orf40 Missense_Mutation p.D258N 0.30 tolerated(0.07) possibly_damaging(0.904) TCGA-F5-6814-01 12 40115012 40115012 G A C12orf40 Missense_Mutation p.A640T 0.08 tolerated(0.12) benign(0.021) TCGA-F5-6814-01 12 40634289 40634289 A G LRRK2 Silent p.S192S 0.29 TCGA-F5-6814-01 12 40689407 40689407 C T LRRK2 Silent p.H1019H 0.09 TCGA-F5-6814-01 12 40734127 40734127 G T LRRK2 Missense_Mutation p.D1994Y 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 40745387 40745387 G A LRRK2 Missense_Mutation p.R2143H 0.46 tolerated(0.67) benign(0) TCGA-F5-6814-01 12 40926860 40926860 C A MUC19 Intron 0.21 TCGA-F5-6814-01 12 40959488 40959488 G T MUC19 3'UTR 0.38 TCGA-F5-6814-01 12 40964489 40964489 A G MUC19 3'UTR 0.14 TCGA-F5-6814-01 12 41323598 41323598 A G CNTN1 Missense_Mutation p.D166G 0.30 tolerated(1) benign(0.041) TCGA-F5-6814-01 12 41323612 41323612 C T CNTN1 Missense_Mutation p.R171C 0.09 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 41463939 41463939 A G CNTN1 3'UTR 0.32 TCGA-F5-6814-01 12 41957414 41957414 A C PDZRN4 Missense_Mutation p.K477T 0.52 tolerated(0.6) possibly_damaging(0.79) TCGA-F5-6814-01 12 41967120 41967120 G A PDZRN4 Missense_Mutation p.A847T 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-F5-6814-01 12 42481472 42481472 A C GXYLT1 3'UTR 0.33 TCGA-F5-6814-01 12 42778745 42778745 C T PPHLN1 Missense_Mutation p.S172F 0.24 tolerated(0.11) benign(0.006) TCGA-F5-6814-01 12 42853738 42853738 C A PRICKLE1 Missense_Mutation p.R790I 0.11 deleterious(0) benign(0.221) TCGA-F5-6814-01 12 42858721 42858721 G T PRICKLE1 Missense_Mutation p.S372Y 0.37 deleterious(0) possibly_damaging(0.804) TCGA-F5-6814-01 12 43828135 43828135 T C ADAMTS20 Missense_Mutation p.D878G 0.09 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 43846183 43846183 C T ADAMTS20 Missense_Mutation p.C658Y 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 12 43944935 43944935 C T ADAMTS20 Missense_Mutation p.R77Q 0.35 tolerated(0.27) probably_damaging(0.984) TCGA-F5-6814-01 12 44148356 44148356 A T PUS7L Missense_Mutation p.F231L 0.26 deleterious(0) possibly_damaging(0.566) TCGA-F5-6814-01 12 44196126 44196126 T G TWF1 Missense_Mutation p.E82A 0.19 tolerated(0.07) possibly_damaging(0.688) TCGA-F5-6814-01 12 44693370 44693370 C A TMEM117 Missense_Mutation p.L206I 0.24 tolerated(0.08) probably_damaging(0.978) TCGA-F5-6814-01 12 45269017 45269017 G A NELL2 Missense_Mutation p.L109F 0.46 tolerated(0.19) benign(0.012) TCGA-F5-6814-01 12 45417602 45417602 A G DBX2 Missense_Mutation p.V192A 0.27 deleterious(0) probably_damaging(0.953) TCGA-F5-6814-01 12 45567149 45567149 G A PLEKHA8P1 RNA 0.12 TCGA-F5-6814-01 12 45725085 45725085 T G ANO6 Missense_Mutation p.F74C 0.08 tolerated(0.16) probably_damaging(0.982) TCGA-F5-6814-01 12 4609504 4609504 C T C12orf4 Missense_Mutation p.E414K 0.30 deleterious(0.01) probably_damaging(0.935) TCGA-F5-6814-01 12 46125016 46125016 A G ARID2 Missense_Mutation p.Q68R 0.10 tolerated(0.09) probably_damaging(0.988) TCGA-F5-6814-01 12 46211621 46211621 A C ARID2 Missense_Mutation p.D196A 0.15 tolerated(0.57) probably_damaging(0.936) TCGA-F5-6814-01 12 46245923 46245923 G T ARID2 Missense_Mutation p.Q1339H 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.646) TCGA-F5-6814-01 12 46245974 46245974 G A ARID2 Silent p.P1356P 0.18 TCGA-F5-6814-01 12 46246147 46246147 G T ARID2 Missense_Mutation p.R1414I 0.21 deleterious_low_confidence(0) possibly_damaging(0.794) TCGA-F5-6814-01 12 46285569 46285569 T C ARID2 Silent p.F1643F 0.35 TCGA-F5-6814-01 12 46322313 46322313 G A SCAF11 Missense_Mutation p.R391W 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 46349933 46349933 C T SCAF11 Intron 0.24 TCGA-F5-6814-01 12 4645321 4645321 C A C12orf4 Nonsense_Mutation p.E14* 0.13 TCGA-F5-6814-01 12 4645341 4645341 C T C12orf4 Missense_Mutation p.R7K 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-F5-6814-01 12 4665585 4665585 C A RAD51AP1 Missense_Mutation p.S280Y 0.10 tolerated(0.33) benign(0.009) TCGA-F5-6814-01 12 46761119 46761119 G T SLC38A2 Missense_Mutation p.L107I 0.19 deleterious(0.01) possibly_damaging(0.893) TCGA-F5-6814-01 12 4700335 4700335 G T DYRK4 5'UTR 0.10 TCGA-F5-6814-01 12 47162133 47162133 A C SLC38A4 Missense_Mutation p.L501R 0.22 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 12 47471457 47471457 C T AMIGO2 Silent p.S443S 0.36 TCGA-F5-6814-01 12 47472416 47472416 A C AMIGO2 Missense_Mutation p.L124V 0.28 deleterious(0) benign(0.122) TCGA-F5-6814-01 12 47629473 47629473 C T PCED1B Silent p.F209F 0.17 TCGA-F5-6814-01 12 47629953 47629953 C T PCED1B Silent p.V369V 0.32 TCGA-F5-6814-01 12 48064115 48064115 T G RPAP3 Missense_Mutation p.K434T 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-F5-6814-01 12 48082928 48082928 C A RPAP3 Nonsense_Mutation p.E240* 0.22 TCGA-F5-6814-01 12 48096599 48096599 C T RPAP3 Missense_Mutation p.E9K 0.06 deleterious(0) possibly_damaging(0.905) TCGA-F5-6814-01 12 48137388 48137388 C A RAPGEF3 Nonsense_Mutation p.E584* 0.29 TCGA-F5-6814-01 12 48152344 48152344 C A RAPGEF3 5'UTR 0.32 TCGA-F5-6814-01 12 48578828 48578829 - T C12orf68 3'UTR 0.22 TCGA-F5-6814-01 12 48579003 48579003 G A C12orf68 3'UTR 0.37 TCGA-F5-6814-01 12 49065672 49065672 A G KANSL2 Missense_Mutation p.Y207H 0.18 deleterious(0) benign(0.23) TCGA-F5-6814-01 12 49087086 49087086 C T CCNT1 Silent p.S637S 0.42 TCGA-F5-6814-01 12 49108276 49108276 A G CCNT1 Missense_Mutation p.Y65H 0.11 deleterious(0.04) probably_damaging(0.954) TCGA-F5-6814-01 12 49162745 49162745 C T ADCY6 Missense_Mutation p.S1119N 0.28 deleterious(0) probably_damaging(0.959) TCGA-F5-6814-01 12 4921393 4921393 G T KCNA6 3'UTR 0.24 TCGA-F5-6814-01 12 4921604 4921604 G T KCNA6 3'UTR 0.27 TCGA-F5-6814-01 12 4921681 4921681 G T KCNA6 3'UTR 0.16 TCGA-F5-6814-01 12 49227130 49227130 T C DDX23 Missense_Mutation p.D578G 0.40 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 12 4922833 4922833 G T KCNA6 3'UTR 0.41 TCGA-F5-6814-01 12 49312097 49312097 A G CCDC65 Missense_Mutation p.N217D 0.16 tolerated(0.1) benign(0.014) TCGA-F5-6814-01 12 49315754 49315754 A C FKBP11 3'UTR 0.23 TCGA-F5-6814-01 12 49333815 49333815 C T ARF3 Missense_Mutation p.R75Q 0.38 deleterious_low_confidence(0.04) benign(0.023) TCGA-F5-6814-01 12 49399314 49399314 A C PRKAG1 Missense_Mutation p.F61V 0.10 deleterious(0) probably_damaging(0.965) TCGA-F5-6814-01 12 49497524 49497524 A G LMBR1L Missense_Mutation p.W170R 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 49726858 49726858 G A C1QL4 Silent p.G232G 0.10 TCGA-F5-6814-01 12 50042020 50042020 C A FMNL3 Nonsense_Mutation p.E878* 0.15 TCGA-F5-6814-01 12 50190841 50190841 C A NCKAP5L Nonsense_Mutation p.E268* 0.21 TCGA-F5-6814-01 12 50191090 50191090 G A NCKAP5L Missense_Mutation p.R185W 0.33 deleterious(0) possibly_damaging(0.785) TCGA-F5-6814-01 12 5020653 5020653 G A KCNA1 Missense_Mutation p.E37K 0.44 tolerated(0.06) probably_damaging(0.994) TCGA-F5-6814-01 12 5023202 5023202 A C KCNA1 3'UTR 0.33 TCGA-F5-6814-01 12 50232675 50232675 C T BCDIN3D Missense_Mutation p.E120K 0.44 tolerated(0.52) benign(0) TCGA-F5-6814-01 12 5027191 5027191 T G KCNA1 3'UTR 0.10 TCGA-F5-6814-01 12 50388038 50388038 A C RACGAP1 Silent p.T405T 0.08 TCGA-F5-6814-01 12 50482332 50482332 A G SMARCD1 Missense_Mutation p.K228R 0.33 tolerated(0.05) benign(0.23) TCGA-F5-6814-01 12 50744320 50744320 C T FAM186A Missense_Mutation p.E2099K 0.40 deleterious(0) probably_damaging(0.915) TCGA-F5-6814-01 12 50747632 50747632 G A FAM186A Missense_Mutation p.P995S 0.44 tolerated(0.77) benign(0.007) TCGA-F5-6814-01 12 50748233 50748233 C A FAM186A Missense_Mutation p.M794I 0.09 tolerated(0.1) benign(0.065) TCGA-F5-6814-01 12 50748464 50748464 T G FAM186A Missense_Mutation p.K717N 0.06 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 12 50748558 50748558 T G FAM186A Missense_Mutation p.N686T 0.39 deleterious(0) benign(0.298) TCGA-F5-6814-01 12 50749515 50749515 A G FAM186A Missense_Mutation p.V367A 0.10 tolerated(0.76) benign(0.001) TCGA-F5-6814-01 12 50867886 50867886 C T LARP4 Missense_Mutation p.S591L 0.30 tolerated(0.12) benign(0.004) TCGA-F5-6814-01 12 50869600 50869600 C T LARP4 Nonsense_Mutation p.R710* 0.34 TCGA-F5-6814-01 12 51115152 51115152 G T DIP2B Missense_Mutation p.D1047Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 51236849 51236849 G A TMPRSS12 Silent p.S34S 0.31 TCGA-F5-6814-01 12 51323773 51323773 A C METTL7A Missense_Mutation p.D192A 0.19 tolerated(0.15) benign(0.002) TCGA-F5-6814-01 12 51442841 51442841 A G LETMD1 Silent p.P49P 0.16 TCGA-F5-6814-01 12 51447573 51447573 G A LETMD1 Missense_Mutation p.V148I 0.12 tolerated(0.73) benign(0.006) TCGA-F5-6814-01 12 51457950 51457950 G T CSRNP2 Nonsense_Mutation p.S404* 0.20 TCGA-F5-6814-01 12 51584045 51584045 G A POU6F1 Silent p.V297V 0.31 TCGA-F5-6814-01 12 51586182 51586182 T C POU6F1 Missense_Mutation p.K108E 0.10 tolerated(0.73) benign(0.005) TCGA-F5-6814-01 12 52078063 52078063 A C SCN8A Missense_Mutation p.I128L 0.37 deleterious(0.04) possibly_damaging(0.801) TCGA-F5-6814-01 12 521066 521066 G T CCDC77 Missense_Mutation p.K64N 0.29 deleterious(0.02) probably_damaging(0.928) TCGA-F5-6814-01 12 52201058 52201058 A G SCN8A Missense_Mutation p.T1930A 0.10 tolerated(0.4) benign(0.001) TCGA-F5-6814-01 12 52282525 52282525 G T ANKRD33 Missense_Mutation p.D107Y 0.40 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 12 52407689 52407689 C T GRASP Missense_Mutation p.R193W 0.08 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 52761161 52761161 G T KRT85 Nonsense_Mutation p.S10* 0.33 TCGA-F5-6814-01 12 52779138 52779138 G A KRT84 Missense_Mutation p.R78C 0.39 deleterious(0.03) benign(0.001) TCGA-F5-6814-01 12 52827723 52827723 T C KRT75 Silent p.Q122Q 0.15 TCGA-F5-6814-01 12 52881878 52881878 G A KRT6A Silent p.G478G 0.48 TCGA-F5-6814-01 12 52886884 52886884 C T KRT6A Missense_Mutation p.R30H 0.37 tolerated(0.18) unknown(0) TCGA-F5-6814-01 12 52913636 52913636 G T KRT5 Missense_Mutation p.L149I 0.25 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 52941768 52941768 T C KRT71 Splice_Site p.X327_splice 0.14 TCGA-F5-6814-01 12 53040619 53040619 C T KRT2 Silent p.R458R 0.26 TCGA-F5-6814-01 12 53070861 53070861 G A KRT1 Silent p.I412I 0.43 TCGA-F5-6814-01 12 53171073 53171073 C A KRT76 Translation_Start_Site p.M1? 0.36 deleterious(0) unknown(0) TCGA-F5-6814-01 12 53185100 53185100 C A KRT3 Missense_Mutation p.K475N 0.51 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 53224040 53224040 C A KRT79 Missense_Mutation p.E245D 0.25 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 53225385 53225385 T G KRT79 Missense_Mutation p.K168T 0.31 deleterious(0) possibly_damaging(0.815) TCGA-F5-6814-01 12 53427733 53427733 G T EIF4B Nonsense_Mutation p.E375* 0.09 TCGA-F5-6814-01 12 53566336 53566336 G A CSAD Missense_Mutation p.R102W 0.38 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 12 53918377 53918377 C A ATF7 Nonsense_Mutation p.E366* 0.32 TCGA-F5-6814-01 12 54338911 54338911 G T HOXC13 Missense_Mutation p.E288D 0.23 tolerated(1) benign(0.018) TCGA-F5-6814-01 12 54379596 54379596 G A HOXC10 Missense_Mutation p.E185K 0.21 tolerated(0.49) benign(0.101) TCGA-F5-6814-01 12 54396358 54396358 T C HOXC9 Missense_Mutation p.V228A 0.29 tolerated(0.34) possibly_damaging(0.589) TCGA-F5-6814-01 12 54577513 54577513 C T SMUG1 Missense_Mutation p.R71H 0.40 tolerated(0.08) benign(0.094) TCGA-F5-6814-01 12 54635676 54635676 C A CBX5 Nonsense_Mutation p.E147* 0.40 TCGA-F5-6814-01 12 54757491 54757491 G A GPR84 Missense_Mutation p.P49S 0.10 tolerated(0.34) benign(0.314) TCGA-F5-6814-01 12 54915006 54915006 G A NCKAP1L Missense_Mutation p.R621Q 0.30 tolerated(0.29) possibly_damaging(0.548) TCGA-F5-6814-01 12 54966478 54966478 G A PDE1B Missense_Mutation p.D230N 0.40 deleterious(0) probably_damaging(0.953) TCGA-F5-6814-01 12 55024707 55024707 T C LACRT Missense_Mutation p.K129R 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.486) TCGA-F5-6814-01 12 55356599 55356599 G T TESPA1 Silent p.V361V 0.31 TCGA-F5-6814-01 12 55356874 55356874 G T TESPA1 Missense_Mutation p.L270M 0.20 tolerated(0.14) benign(0.269) TCGA-F5-6814-01 12 55423450 55423450 T G NEUROD4 3'UTR 0.36 TCGA-F5-6814-01 12 55524528 55524528 A C OR9K2 Missense_Mutation p.K326Q 0.42 deleterious(0) benign(0.053) TCGA-F5-6814-01 12 55614884 55614884 T G OR10A7 Missense_Mutation p.S26A 0.15 tolerated(0.1) benign(0.016) TCGA-F5-6814-01 12 55641322 55641322 C T OR6C74 Missense_Mutation p.A84V 0.09 tolerated_low_confidence(1) benign(0.002) TCGA-F5-6814-01 12 55641591 55641591 C A OR6C74 Missense_Mutation p.H174N 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F5-6814-01 12 55641651 55641651 G T OR6C74 Nonsense_Mutation p.E194* 0.11 TCGA-F5-6814-01 12 55688815 55688815 C T OR6C6 Missense_Mutation p.E68K 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.40 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-F5-6814-01 12 55725960 55725960 T G OR6C3 Missense_Mutation p.L159R 0.11 deleterious_low_confidence(0) benign(0.35) TCGA-F5-6814-01 12 55759569 55759569 A G OR6C75 Silent p.K225K 0.19 TCGA-F5-6814-01 12 55759717 55759717 C T OR6C75 Missense_Mutation p.L275F 0.37 deleterious_low_confidence(0.01) benign(0.019) TCGA-F5-6814-01 12 55794726 55794726 C A OR6C65 Silent p.V138V 0.25 TCGA-F5-6814-01 12 55794750 55794750 C A OR6C65 Silent p.S146S 0.09 TCGA-F5-6814-01 12 55886432 55886432 A G OR6C68 Missense_Mutation p.T91A 0.36 deleterious_low_confidence(0.02) benign(0.092) TCGA-F5-6814-01 12 5604444 5604444 T G NTF3 3'UTR 0.26 TCGA-F5-6814-01 12 56231435 56231435 C A MMP19 Missense_Mutation p.K364N 0.11 deleterious(0.02) possibly_damaging(0.903) TCGA-F5-6814-01 12 56335092 56335092 C T DGKA Silent p.G386G 0.11 TCGA-F5-6814-01 12 56397736 56397736 T C SUOX Missense_Mutation p.V188A 0.18 tolerated(0.26) benign(0.065) TCGA-F5-6814-01 12 56487223 56487223 A C ERBB3 Missense_Mutation p.S457R 0.18 tolerated(0.07) probably_damaging(0.99) TCGA-F5-6814-01 12 56561901 56561901 C A SMARCC2 Missense_Mutation p.E900D 0.34 tolerated(0.08) benign(0.217) TCGA-F5-6814-01 12 56648375 56648375 C A ANKRD52 Missense_Mutation p.R227L 0.41 tolerated(0.19) possibly_damaging(0.495) TCGA-F5-6814-01 12 56651120 56651120 T C ANKRD52 Missense_Mutation p.H46R 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 56737209 56737209 G T STAT2 Missense_Mutation p.F840L 0.40 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-F5-6814-01 12 56863053 56863053 G A SPRYD4 Missense_Mutation p.D106N 0.38 tolerated(0.34) benign(0.133) TCGA-F5-6814-01 12 56865612 56865612 C T GLS2 Missense_Mutation p.E533K 0.10 tolerated(0.13) benign(0.086) TCGA-F5-6814-01 12 56975019 56975019 A C RBMS2 Missense_Mutation p.K198N 0.21 tolerated(0.08) possibly_damaging(0.839) TCGA-F5-6814-01 12 56997461 56997461 C T BAZ2A Missense_Mutation p.R1023Q 0.20 deleterious(0.01) possibly_damaging(0.646) TCGA-F5-6814-01 12 57039044 57039044 T G ATP5B Missense_Mutation p.Q74P 0.50 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-F5-6814-01 12 57112694 57112694 A G NACA Intron 0.38 TCGA-F5-6814-01 12 57327832 57327832 G A SDR9C7 Missense_Mutation p.R72W 0.21 deleterious(0.02) possibly_damaging(0.904) TCGA-F5-6814-01 12 57346031 57346031 C T RDH16 Splice_Site p.X246_splice 0.22 TCGA-F5-6814-01 12 57430161 57430161 C T MYO1A Missense_Mutation p.R760Q 0.41 deleterious(0.04) probably_damaging(0.991) TCGA-F5-6814-01 12 57457058 57457058 C T TMEM194A Missense_Mutation p.R275Q 0.37 deleterious(0.02) probably_damaging(0.968) TCGA-F5-6814-01 12 57640594 57640594 T G STAC3 Missense_Mutation p.K199T 0.45 tolerated(0.24) probably_damaging(0.942) TCGA-F5-6814-01 12 57641912 57641912 G T STAC3 Missense_Mutation p.L168I 0.12 tolerated(1) benign(0.01) TCGA-F5-6814-01 12 57642526 57642526 T G STAC3 Missense_Mutation p.Q132P 0.09 tolerated(0.14) probably_damaging(0.998) TCGA-F5-6814-01 12 57650207 57650207 G A R3HDM2 Missense_Mutation p.T832M 0.22 tolerated(0.08) benign(0.201) TCGA-F5-6814-01 12 57663756 57663756 A C R3HDM2 Missense_Mutation p.F442V 0.40 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 12 57863334 57863334 G T GLI1 Missense_Mutation p.D477Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 57882530 57882530 A C MARS Intron 0.39 TCGA-F5-6814-01 12 57905572 57905572 G A MARS Missense_Mutation p.R487Q 0.36 deleterious(0.01) possibly_damaging(0.734) TCGA-F5-6814-01 12 58006963 58006963 C A ARHGEF25 Intron 0.55 TCGA-F5-6814-01 12 58111706 58111706 C T OS9 Nonsense_Mutation p.R367* 0.36 TCGA-F5-6814-01 12 58125401 58125401 T C AGAP2 Missense_Mutation p.K660E 0.20 tolerated(0.08) probably_damaging(0.991) TCGA-F5-6814-01 12 58142979 58142979 C T CDK4 Missense_Mutation p.A269T 0.09 tolerated(0.58) benign(0.047) TCGA-F5-6814-01 12 58145042 58145042 C A CDK4 Missense_Mutation p.R101M 0.38 tolerated(0.06) possibly_damaging(0.688) TCGA-F5-6814-01 12 58152049 58152049 C T MARCH9 Silent p.Y224Y 0.54 TCGA-F5-6814-01 12 58166855 58166855 A C METTL21B Missense_Mutation p.K78T 0.40 deleterious(0.04) benign(0.013) TCGA-F5-6814-01 12 60168787 60168787 A C SLC16A7 Missense_Mutation p.L237F 0.18 deleterious(0.02) benign(0.25) TCGA-F5-6814-01 12 6061043 6061043 T G VWF Missense_Mutation p.I2708L 0.11 tolerated(0.05) benign(0.141) TCGA-F5-6814-01 12 6076736 6076736 C T VWF Silent p.T2601T 0.44 TCGA-F5-6814-01 12 6131199 6131199 T G VWF Missense_Mutation p.K1181Q 0.12 tolerated(0.38) benign(0.06) TCGA-F5-6814-01 12 6173455 6173455 T C VWF Silent p.G463G 0.24 TCGA-F5-6814-01 12 62777650 62777650 C A USP15 Missense_Mutation p.F373L 0.24 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 12 62954520 62954520 G A MON2 Missense_Mutation p.G1220E 0.27 tolerated(0.34) benign(0.22) TCGA-F5-6814-01 12 6342634 6342634 A C CD9 Silent p.G110G 0.23 TCGA-F5-6814-01 12 64011090 64011090 C A DPY19L2 Missense_Mutation p.M404I 0.08 tolerated(0.55) benign(0.006) TCGA-F5-6814-01 12 64587687 64587687 C A C12orf66 Nonsense_Mutation p.E425* 0.36 TCGA-F5-6814-01 12 64615921 64615921 C T C12orf66 Missense_Mutation p.A33T 0.54 deleterious(0) possibly_damaging(0.867) TCGA-F5-6814-01 12 64678521 64678521 T G C12orf56 Missense_Mutation p.E251D 0.24 tolerated(0.48) possibly_damaging(0.798) TCGA-F5-6814-01 12 65847539 65847539 T G MSRB3 Silent p.S115S 0.24 TCGA-F5-6814-01 12 66345283 66345283 C T HMGA2 Intron 0.20 TCGA-F5-6814-01 12 66522827 66522827 C A LLPH Missense_Mutation p.K20N 0.20 deleterious(0.04) possibly_damaging(0.896) TCGA-F5-6814-01 12 66641501 66641501 A C IRAK3 Missense_Mutation p.Q447H 0.17 tolerated(0.06) benign(0.03) TCGA-F5-6814-01 12 66642028 66642028 G A IRAK3 3'UTR 0.29 TCGA-F5-6814-01 12 66698751 66698751 A C HELB Missense_Mutation p.K143T 0.41 tolerated(0.13) benign(0.041) TCGA-F5-6814-01 12 66935717 66935717 G T GRIP1 Silent p.G50G 0.08 TCGA-F5-6814-01 12 6711558 6711558 T G CHD4 Missense_Mutation p.K69T 0.30 deleterious_low_confidence(0) benign(0.403) TCGA-F5-6814-01 12 6752714 6752714 G A ACRBP Silent p.F356F 0.10 TCGA-F5-6814-01 12 6752786 6752786 G A ACRBP Silent p.I332I 0.22 TCGA-F5-6814-01 12 6782412 6782412 C T ZNF384 Missense_Mutation p.R294H 0.12 tolerated(0.15) possibly_damaging(0.812) TCGA-F5-6814-01 12 68052220 68052220 C A DYRK2 Missense_Mutation p.F511L 0.36 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 68052901 68052901 G T DYRK2 3'UTR 0.30 TCGA-F5-6814-01 12 68053319 68053319 T C DYRK2 3'UTR 0.22 TCGA-F5-6814-01 12 68053410 68053410 G A DYRK2 3'UTR 0.09 TCGA-F5-6814-01 12 68054772 68054772 A C DYRK2 3'UTR 0.41 TCGA-F5-6814-01 12 6806507 6806507 G T PIANP Missense_Mutation p.L157I 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.567) TCGA-F5-6814-01 12 68551714 68551714 G A IFNG Silent p.F115F 0.10 TCGA-F5-6814-01 12 68553343 68553343 G T IFNG Missense_Mutation p.S18Y 0.49 tolerated(0.44) benign(0.284) TCGA-F5-6814-01 12 68553396 68553396 C T IFNG 5'UTR 0.37 TCGA-F5-6814-01 12 68619245 68619245 C A IL26 Missense_Mutation p.K69N 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 12 68619268 68619268 T G IL26 Missense_Mutation p.K62Q 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 12 68690746 68690746 C A MDM1 Missense_Mutation p.M663I 0.25 tolerated(0.09) benign(0.211) TCGA-F5-6814-01 12 68707272 68707272 C A MDM1 Missense_Mutation p.R557I 0.10 deleterious(0) benign(0.336) TCGA-F5-6814-01 12 68719155 68719155 C A MDM1 Intron 0.42 TCGA-F5-6814-01 12 68720248 68720248 C T MDM1 Intron 0.33 TCGA-F5-6814-01 12 68720794 68720794 C T MDM1 Silent p.T47T 0.39 TCGA-F5-6814-01 12 69103079 69103079 G A NUP107 Missense_Mutation p.R264Q 0.12 deleterious(0) possibly_damaging(0.875) TCGA-F5-6814-01 12 69140376 69140376 G A SLC35E3 Silent p.P73P 0.26 TCGA-F5-6814-01 12 69233598 69233598 T G MDM2 Missense_Mutation p.I488S 0.09 deleterious(0) probably_damaging(0.964) TCGA-F5-6814-01 12 69250339 69250339 G A CPM Missense_Mutation p.P404S 0.41 tolerated(0.8) benign(0.003) TCGA-F5-6814-01 12 6925252 6925252 A C CD4 Missense_Mutation p.K213T 0.23 tolerated(0.26) benign(0.086) TCGA-F5-6814-01 12 69263237 69263237 C A CPM Missense_Mutation p.D219Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 12 69653297 69653297 C T CPSF6 Missense_Mutation p.S430L 0.18 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 12 69981998 69981998 G A CCT2 Silent p.T134T 0.40 TCGA-F5-6814-01 12 69987299 69987299 T G CCT2 Missense_Mutation p.I296M 0.22 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 12 69990996 69990996 T G CCT2 Missense_Mutation p.L348R 0.18 tolerated(0.17) benign(0.02) TCGA-F5-6814-01 12 70087579 70087579 T C BEST3 Missense_Mutation p.E119G 0.36 deleterious(0) possibly_damaging(0.9) TCGA-F5-6814-01 12 70133641 70133641 G T RAB3IP Missense_Mutation p.K5N 0.33 tolerated_low_confidence(0.26) benign(0.001) TCGA-F5-6814-01 12 70206777 70206777 C T RAB3IP Nonsense_Mutation p.R438* 0.18 TCGA-F5-6814-01 12 70915238 70915238 A T PTPRB 3'UTR 0.29 TCGA-F5-6814-01 12 70932728 70932728 T G PTPRB Missense_Mutation p.N1949H 0.49 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 70974914 70974914 C T PTPRB Missense_Mutation p.S827N 0.31 tolerated(0.57) benign(0.044) TCGA-F5-6814-01 12 71551494 71551494 T C TSPAN8 5'UTR 0.30 TCGA-F5-6814-01 12 7188040 7188040 G T C1R Missense_Mutation p.F586L 0.30 tolerated(0.05) probably_damaging(1) TCGA-F5-6814-01 12 71928904 71928904 G T LGR5 Missense_Mutation p.Q122H 0.25 deleterious(0.02) probably_damaging(0.997) TCGA-F5-6814-01 12 71946897 71946897 T G LGR5 Missense_Mutation p.F158C 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 12 72017262 72017262 T G ZFC3H1 Missense_Mutation p.K1541T 0.08 tolerated(0.21) benign(0.169) TCGA-F5-6814-01 12 72091263 72091263 C A TMEM19 Missense_Mutation p.L196M 0.35 tolerated(0.18) probably_damaging(0.961) TCGA-F5-6814-01 12 72167757 72167757 G T RAB21 Nonsense_Mutation p.E116* 0.30 TCGA-F5-6814-01 12 72287019 72287019 G T TBC1D15 Missense_Mutation p.R191I 0.41 deleterious(0) possibly_damaging(0.772) TCGA-F5-6814-01 12 72312299 72312299 A C TBC1D15 Missense_Mutation p.S541R 0.11 deleterious(0.03) possibly_damaging(0.876) TCGA-F5-6814-01 12 72314523 72314523 G A TBC1D15 Missense_Mutation p.E555K 0.22 tolerated(0.49) benign(0.212) TCGA-F5-6814-01 12 72335499 72335499 C T TPH2 Silent p.L81L 0.12 TCGA-F5-6814-01 12 7287948 7287948 G A CLSTN3 Missense_Mutation p.D137N 0.40 deleterious(0.01) possibly_damaging(0.895) TCGA-F5-6814-01 12 73014958 73014958 C A TRHDE Missense_Mutation p.S802Y 0.25 deleterious(0.02) probably_damaging(0.93) TCGA-F5-6814-01 12 73015426 73015426 A C TRHDE Missense_Mutation p.E812A 0.38 deleterious(0.04) possibly_damaging(0.867) TCGA-F5-6814-01 12 7463176 7463176 G T ACSM4 Missense_Mutation p.D152Y 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 74932517 74932517 A C ATXN7L3B 3'UTR 0.50 TCGA-F5-6814-01 12 74934964 74934964 T G ATXN7L3B 3'UTR 0.26 TCGA-F5-6814-01 12 75444659 75444659 G A KCNC2 Nonsense_Mutation p.R376* 0.46 TCGA-F5-6814-01 12 75710157 75710157 T G CAPS2 Missense_Mutation p.I195L 0.07 tolerated(1) benign(0) TCGA-F5-6814-01 12 75720260 75720260 C T CAPS2 Missense_Mutation p.G26R 0.25 tolerated(0.06) probably_damaging(0.984) TCGA-F5-6814-01 12 7586222 7586222 A C CD163L1 Missense_Mutation p.F65V 0.18 tolerated(0.11) probably_damaging(0.982) TCGA-F5-6814-01 12 75874698 75874698 C A GLIPR1 Missense_Mutation p.S13Y 0.22 tolerated(0.35) benign(0.235) TCGA-F5-6814-01 12 75884218 75884218 C T GLIPR1 Silent p.C151C 0.46 TCGA-F5-6814-01 12 7640131 7640131 T C CD163 Missense_Mutation p.K625R 0.42 tolerated(0.05) benign(0.139) TCGA-F5-6814-01 12 76449918 76449918 C A NAP1L1 Missense_Mutation p.K151N 0.09 tolerated(0.18) benign(0.056) TCGA-F5-6814-01 12 7651618 7651618 G T CD163 Missense_Mutation p.F208L 0.39 tolerated(0.36) possibly_damaging(0.513) TCGA-F5-6814-01 12 76739503 76739503 G A BBS10 3'UTR 0.12 TCGA-F5-6814-01 12 76740615 76740615 G T BBS10 Missense_Mutation p.L384I 0.28 tolerated(0.54) benign(0.167) TCGA-F5-6814-01 12 76741231 76741231 A C BBS10 Missense_Mutation p.F178L 0.37 tolerated(0.12) benign(0.198) TCGA-F5-6814-01 12 76741382 76741382 A C BBS10 Missense_Mutation p.F128C 0.26 tolerated(0.19) benign(0.002) TCGA-F5-6814-01 12 78443820 78443820 G T NAV3 Missense_Mutation p.D691Y 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 78444770 78444770 C T NAV3 Nonsense_Mutation p.R787* 0.16 TCGA-F5-6814-01 12 78522489 78522489 T G NAV3 Nonsense_Mutation p.Y1428* 0.25 TCGA-F5-6814-01 12 78534097 78534097 T A NAV3 Missense_Mutation p.S1556T 0.13 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 12 78573369 78573369 A C NAV3 Missense_Mutation p.R1786S 0.29 deleterious(0.03) probably_damaging(0.918) TCGA-F5-6814-01 12 78579418 78579418 T C NAV3 Silent p.H1888H 0.15 TCGA-F5-6814-01 12 78593230 78593230 A G NAV3 Missense_Mutation p.K2190E 0.52 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 12 78594345 78594345 C A NAV3 Missense_Mutation p.L2248M 0.39 deleterious(0.04) benign(0.292) TCGA-F5-6814-01 12 7883477 7883477 G T CLEC4C Missense_Mutation p.S138Y 0.40 tolerated(0.28) benign(0.316) TCGA-F5-6814-01 12 7894096 7894096 G T CLEC4C Silent p.V52V 0.26 TCGA-F5-6814-01 12 7899954 7899954 G A CLEC4C 5'UTR 0.24 TCGA-F5-6814-01 12 7945637 7945637 G T NANOG Missense_Mutation p.E81D 0.21 tolerated(0.1) benign(0.071) TCGA-F5-6814-01 12 79685826 79685826 T C SYT1 Silent p.D130D 0.14 TCGA-F5-6814-01 12 7984351 7984351 C A SLC2A14 Nonsense_Mutation p.E64* 0.33 TCGA-F5-6814-01 12 80730732 80730732 T G OTOGL Nonsense_Mutation p.L1594* 0.33 TCGA-F5-6814-01 12 80735905 80735905 T C OTOGL Missense_Mutation p.L1734S 0.30 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 12 80761501 80761501 T C OTOGL Silent p.C2155C 0.09 TCGA-F5-6814-01 12 80838157 80838157 T G PTPRQ Missense_Mutation p.F11C 0.29 tolerated_low_confidence(0.18) possibly_damaging(0.8) TCGA-F5-6814-01 12 80865910 80865910 G T PTPRQ Missense_Mutation p.D352Y 0.25 deleterious(0) probably_damaging(0.959) TCGA-F5-6814-01 12 80982137 80982137 G T PTPRQ Missense_Mutation p.K1501N 0.47 tolerated(0.15) benign(0.444) TCGA-F5-6814-01 12 81010041 81010041 C A PTPRQ Silent p.I1738I 0.37 TCGA-F5-6814-01 12 81026065 81026065 T C PTPRQ Silent p.F1923F 0.14 TCGA-F5-6814-01 12 81545465 81545465 G T ACSS3 Intron 0.33 TCGA-F5-6814-01 12 81568666 81568666 A T ACSS3 Missense_Mutation p.I400F 0.33 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 12 81648653 81648653 A C ACSS3 Missense_Mutation p.E671D 0.14 tolerated(1) probably_damaging(0.999) TCGA-F5-6814-01 12 81678032 81678032 A G PPFIA2 Silent p.A992A 0.12 TCGA-F5-6814-01 12 8202105 8202105 C T FOXJ2 Missense_Mutation p.P492L 0.15 deleterious(0) benign(0.306) TCGA-F5-6814-01 12 8211697 8211697 C T C3AR1 Missense_Mutation p.R362Q 0.50 tolerated(0.08) benign(0.438) TCGA-F5-6814-01 12 82850523 82850523 A C METTL25 Missense_Mutation p.K499T 0.37 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 82872898 82872898 T G METTL25 3'UTR 0.35 TCGA-F5-6814-01 12 83250926 83250926 G A TMTC2 Missense_Mutation p.R74H 0.29 deleterious(0) probably_damaging(0.932) TCGA-F5-6814-01 12 85255455 85255455 A C SLC6A15 Missense_Mutation p.L717V 0.31 tolerated_low_confidence(0.05) benign(0.098) TCGA-F5-6814-01 12 85267054 85267054 G T SLC6A15 Missense_Mutation p.F307L 0.12 deleterious(0.01) possibly_damaging(0.869) TCGA-F5-6814-01 12 85277527 85277527 G T SLC6A15 Intron 0.29 TCGA-F5-6814-01 12 85279267 85279267 T G SLC6A15 Missense_Mutation p.Q174P 0.21 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 85285729 85285729 G A SLC6A15 Silent p.V57V 0.31 TCGA-F5-6814-01 12 85409700 85409700 T G TSPAN19 Missense_Mutation p.L215F 0.35 deleterious(0.02) benign(0.062) TCGA-F5-6814-01 12 85445996 85445996 G T LRRIQ1 Missense_Mutation p.E240D 0.22 deleterious(0.02) probably_damaging(0.983) TCGA-F5-6814-01 12 85449404 85449404 C A LRRIQ1 Missense_Mutation p.S278Y 0.37 deleterious(0.02) benign(0.027) TCGA-F5-6814-01 12 85449884 85449884 T G LRRIQ1 Missense_Mutation p.L438R 0.42 tolerated(0.38) benign(0.26) TCGA-F5-6814-01 12 85450188 85450188 A C LRRIQ1 Missense_Mutation p.K539N 0.46 tolerated(0.53) benign(0.403) TCGA-F5-6814-01 12 85450447 85450447 G T LRRIQ1 Nonsense_Mutation p.E626* 0.16 TCGA-F5-6814-01 12 85450513 85450513 G T LRRIQ1 Missense_Mutation p.D648Y 0.27 deleterious(0.03) possibly_damaging(0.641) TCGA-F5-6814-01 12 85521717 85521717 C A LRRIQ1 Missense_Mutation p.S1372Y 0.09 tolerated(0.5) benign(0.023) TCGA-F5-6814-01 12 85547480 85547480 G T LRRIQ1 Missense_Mutation p.K1527N 0.31 deleterious(0.05) benign(0.209) TCGA-F5-6814-01 12 85677394 85677394 G A ALX1 Missense_Mutation p.E91K 0.39 tolerated(0.12) benign(0.164) TCGA-F5-6814-01 12 85677413 85677413 A C ALX1 Missense_Mutation p.D97A 0.29 deleterious(0.03) benign(0.079) TCGA-F5-6814-01 12 86198958 86198958 C T RASSF9 Missense_Mutation p.R277Q 0.37 tolerated(0.42) benign(0.016) TCGA-F5-6814-01 12 86276134 86276134 G T NTS Missense_Mutation p.R165I 0.26 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 86373040 86373040 A G MGAT4C 3'UTR 0.22 TCGA-F5-6814-01 12 86373660 86373660 C A MGAT4C Nonsense_Mutation p.E282* 0.36 TCGA-F5-6814-01 12 86377404 86377404 C A MGAT4C Silent p.L64L 0.11 TCGA-F5-6814-01 12 8670808 8670808 A G CLEC4D Missense_Mutation p.K57R 0.21 tolerated(0.28) benign(0.014) TCGA-F5-6814-01 12 8687161 8687161 C A CLEC4E 3'UTR 0.40 TCGA-F5-6814-01 12 8689852 8689852 C A CLEC4E Missense_Mutation p.K77N 0.10 tolerated(0.27) benign(0.08) TCGA-F5-6814-01 12 88454672 88454672 T G CEP290 Missense_Mutation p.K2153Q 0.43 benign(0.165) TCGA-F5-6814-01 12 88465643 88465643 C A CEP290 Nonsense_Mutation p.G1924* 0.27 TCGA-F5-6814-01 12 88473971 88473971 C A CEP290 Missense_Mutation p.E1738D 0.36 benign(0.074) TCGA-F5-6814-01 12 88500529 88500529 T G CEP290 Missense_Mutation p.N914H 0.34 possibly_damaging(0.774) TCGA-F5-6814-01 12 8906524 8906524 G A RIMKLB Missense_Mutation p.A178T 0.41 tolerated(0.57) benign(0.034) TCGA-F5-6814-01 12 8976399 8976399 G T A2ML1 Missense_Mutation p.K110N 0.52 tolerated(0.1) benign(0.006) TCGA-F5-6814-01 12 89860701 89860701 T C POC1B Splice_Site p.X294_splice 0.08 TCGA-F5-6814-01 12 8988858 8988858 G A A2ML1 Silent p.P217P 0.39 TCGA-F5-6814-01 12 8988927 8988927 T G A2ML1 Missense_Mutation p.I240M 0.17 deleterious(0) possibly_damaging(0.541) TCGA-F5-6814-01 12 89916872 89916872 G T GALNT4 Missense_Mutation p.F485L 0.43 tolerated(0.06) possibly_damaging(0.669) TCGA-F5-6814-01 12 90024298 90024298 C T ATP2B1 Silent p.K304K 0.10 TCGA-F5-6814-01 12 9004828 9004828 C T A2ML1 Missense_Mutation p.S829L 0.38 deleterious(0.03) benign(0.429) TCGA-F5-6814-01 12 9072394 9072394 T C PHC1 Missense_Mutation p.F53L 0.14 tolerated(0.24) probably_damaging(0.977) TCGA-F5-6814-01 12 9091969 9091969 G T PHC1 Nonsense_Mutation p.E977* 0.24 TCGA-F5-6814-01 12 91449531 91449531 G A KERA Silent p.N176N 0.32 TCGA-F5-6814-01 12 91502182 91502182 C T LUM Missense_Mutation p.S192N 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 12 9223092 9223092 C T A2M Missense_Mutation p.V1396M 0.11 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 12 9254093 9254093 G T A2M Missense_Mutation p.L482M 0.15 deleterious(0.01) probably_damaging(0.957) TCGA-F5-6814-01 12 9254166 9254166 G A A2M Silent p.S457S 0.45 TCGA-F5-6814-01 12 93131289 93131289 C A PLEKHG7 5'UTR 0.27 TCGA-F5-6814-01 12 93134671 93134671 C A PLEKHG7 Missense_Mutation p.L16I 0.40 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 12 9355147 9355147 T G PZP Missense_Mutation p.K134T 0.09 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 12 94620994 94620994 A G PLXNC1 Missense_Mutation p.T655A 0.18 tolerated(0.09) benign(0.002) TCGA-F5-6814-01 12 94648993 94648993 A G PLXNC1 Missense_Mutation p.K1003R 0.13 deleterious(0.04) possibly_damaging(0.627) TCGA-F5-6814-01 12 94653459 94653459 T C PLXNC1 Missense_Mutation p.V1067A 0.23 deleterious(0.02) probably_damaging(0.948) TCGA-F5-6814-01 12 94761893 94761893 C T CCDC41 Missense_Mutation p.R378H 0.37 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 12 95365368 95365368 C A NDUFA12 Missense_Mutation p.D96Y 0.13 deleterious(0.03) probably_damaging(0.938) TCGA-F5-6814-01 12 95485566 95485566 G A FGD6 Missense_Mutation p.S1256L 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 12 95502126 95502126 G A FGD6 Missense_Mutation p.R1088W 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 95604888 95604888 C A FGD6 Missense_Mutation p.V58F 0.33 tolerated(0.17) probably_damaging(0.98) TCGA-F5-6814-01 12 95690031 95690031 C A VEZT Missense_Mutation p.H610N 0.43 deleterious(0.01) possibly_damaging(0.83) TCGA-F5-6814-01 12 95879689 95879689 A G METAP2 Missense_Mutation p.I120M 0.21 deleterious(0.03) benign(0.148) TCGA-F5-6814-01 12 95927171 95927171 G T USP44 Missense_Mutation p.L288I 0.33 tolerated(0.13) probably_damaging(0.951) TCGA-F5-6814-01 12 96052906 96052906 G A NTN4 Missense_Mutation p.L615F 0.43 tolerated(0.07) probably_damaging(0.976) TCGA-F5-6814-01 12 96272051 96272051 C A CCDC38 Missense_Mutation p.A406S 0.09 tolerated(0.16) probably_damaging(0.985) TCGA-F5-6814-01 12 96292383 96292383 G T CCDC38 Silent p.R166R 0.41 TCGA-F5-6814-01 12 96300204 96300204 A C CCDC38 Missense_Mutation p.H110Q 0.39 tolerated(0.31) benign(0.009) TCGA-F5-6814-01 12 96310954 96310954 A C CCDC38 Missense_Mutation p.F86C 0.44 tolerated(0.17) possibly_damaging(0.706) TCGA-F5-6814-01 12 96673861 96673861 A C CDK17 3'UTR 0.36 TCGA-F5-6814-01 12 97057633 97057633 A T C12orf55 Missense_Mutation p.K1829M 0.21 deleterious(0.03) benign(0.096) TCGA-F5-6814-01 12 97087561 97087561 G T C12orf55 Missense_Mutation p.R2109I 0.23 deleterious(0) benign(0.001) TCGA-F5-6814-01 12 97093796 97093796 G T C12orf55 Missense_Mutation p.E2133D 0.34 deleterious(0.02) benign(0.002) TCGA-F5-6814-01 12 97137268 97137268 C A C12orf55 Missense_Mutation p.F2436L 0.36 tolerated(0.77) benign(0) TCGA-F5-6814-01 12 97338540 97338540 T G NEDD1 Missense_Mutation p.C548G 0.16 tolerated(0.06) benign(0.02) TCGA-F5-6814-01 12 97957609 97957609 C T MIR135A2 RNA 0.36 TCGA-F5-6814-01 12 9875162 9875162 G T CLECL1 3'UTR 0.25 TCGA-F5-6814-01 12 98927575 98927575 C T TMPO Missense_Mutation p.P514S 0.28 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-F5-6814-01 12 98989530 98989530 G A SLC25A3 Intron 0.34 TCGA-F5-6814-01 12 99007657 99007657 G A IKBIP Silent p.F253F 0.21 TCGA-F5-6814-01 12 99059385 99059385 G A APAF1 Missense_Mutation p.R337H 0.18 deleterious(0) probably_damaging(0.983) TCGA-F5-6814-01 12 9907196 9907196 C A CD69 Nonsense_Mutation p.E160* 0.36 TCGA-F5-6814-01 12 99074109 99074109 G T APAF1 Nonsense_Mutation p.E659* 0.36 TCGA-F5-6814-01 12 9907825 9907825 A T CD69 Missense_Mutation p.F74I 0.29 tolerated(0.39) benign(0.022) TCGA-F5-6814-01 12 99174914 99174914 A C ANKS1B Missense_Mutation p.F1116C 0.15 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 12 99638184 99638184 T G ANKS1B Missense_Mutation p.K785N 0.22 deleterious(0.04) possibly_damaging(0.831) TCGA-F5-6814-01 12 9980170 9980170 G T KLRF1 Missense_Mutation p.L10F 0.29 tolerated(0.09) possibly_damaging(0.889) TCGA-F5-6814-01 13 100617991 100617991 G A ZIC5 Silent p.V544V 0.20 TCGA-F5-6814-01 13 101077939 101077939 C T PCCA Missense_Mutation p.S600L 0.27 tolerated(0.27) benign(0) TCGA-F5-6814-01 13 101717782 101717782 G A NALCN Silent p.G1526G 0.36 TCGA-F5-6814-01 13 101721148 101721148 A C NALCN Missense_Mutation p.F1410C 0.30 tolerated(0.18) benign(0.252) TCGA-F5-6814-01 13 101728281 101728281 A C NALCN Silent p.T1299T 0.09 TCGA-F5-6814-01 13 101733933 101733933 T G NALCN Missense_Mutation p.D1277A 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 13 103338469 103338469 T G METTL21C Missense_Mutation p.K236T 0.14 deleterious(0.03) probably_damaging(1) TCGA-F5-6814-01 13 103338506 103338506 T G METTL21C Missense_Mutation p.K224Q 0.40 deleterious(0.01) probably_damaging(0.968) TCGA-F5-6814-01 13 103382069 103382069 T G CCDC168 Missense_Mutation p.K2364T 0.20 tolerated(0.1) unknown(0) TCGA-F5-6814-01 13 103382096 103382096 C T CCDC168 Missense_Mutation p.R2355K 0.34 tolerated(0.15) unknown(0) TCGA-F5-6814-01 13 103382613 103382613 G T CCDC168 Missense_Mutation p.L2183I 0.23 tolerated(0.13) unknown(0) TCGA-F5-6814-01 13 103382898 103382898 G T CCDC168 Missense_Mutation p.L2088I 0.35 tolerated(0.21) unknown(0) TCGA-F5-6814-01 13 103383889 103383889 C A CCDC168 Missense_Mutation p.E1757D 0.08 tolerated(0.43) unknown(0) TCGA-F5-6814-01 13 103384068 103384068 C T CCDC168 Missense_Mutation p.E1698K 0.30 tolerated(0.17) unknown(0) TCGA-F5-6814-01 13 103384343 103384343 T G CCDC168 Missense_Mutation p.K1606T 0.07 deleterious(0.03) unknown(0) TCGA-F5-6814-01 13 103384409 103384409 T C CCDC168 Missense_Mutation p.D1584G 0.08 tolerated(0.08) unknown(0) TCGA-F5-6814-01 13 103385294 103385294 G A CCDC168 Missense_Mutation p.P1289L 0.38 deleterious(0.02) unknown(0) TCGA-F5-6814-01 13 103388810 103388810 A C CCDC168 Missense_Mutation p.L117R 0.32 tolerated(0.37) possibly_damaging(0.883) TCGA-F5-6814-01 13 103396811 103396811 G T LINC00283 RNA 0.42 TCGA-F5-6814-01 13 103397057 103397057 G T LINC00283 RNA 0.32 TCGA-F5-6814-01 13 103436829 103436829 G T KDELC1 3'UTR 0.25 TCGA-F5-6814-01 13 103445704 103445704 G T KDELC1 Missense_Mutation p.S220Y 0.44 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 103510633 103510633 C A BIVM-ERCC5 Missense_Mutation p.F605L 0.34 tolerated(0.51) benign(0.011) TCGA-F5-6814-01 13 103519117 103519117 C T BIVM-ERCC5 Missense_Mutation p.R1245W 0.41 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 13 103527941 103527941 A G ERCC5 Silent p.T1083T 0.31 TCGA-F5-6814-01 13 103698443 103698443 G A SLC10A2 3'UTR 0.38 TCGA-F5-6814-01 13 103698551 103698551 C A SLC10A2 Nonsense_Mutation p.E327* 0.28 TCGA-F5-6814-01 13 107196432 107196432 T G ARGLU1 Missense_Mutation p.Q245P 0.26 deleterious(0.02) benign(0.293) TCGA-F5-6814-01 13 107863054 107863054 A C FAM155A Missense_Mutation p.F322C 0.16 tolerated(0.18) possibly_damaging(0.614) TCGA-F5-6814-01 13 108883316 108883316 A C ABHD13 3'UTR 0.20 TCGA-F5-6814-01 13 108955705 108955705 T C TNFSF13B Missense_Mutation p.Y196H 0.36 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 13 109318494 109318494 G T MYO16 Nonsense_Mutation p.E75* 0.40 TCGA-F5-6814-01 13 109610096 109610096 G T MYO16 Missense_Mutation p.E640D 0.25 tolerated(0.08) benign(0.162) TCGA-F5-6814-01 13 109613895 109613895 G T MYO16 Missense_Mutation p.E660D 0.41 tolerated(0.34) benign(0.317) TCGA-F5-6814-01 13 109617123 109617123 C T MYO16 Nonsense_Mutation p.R726* 0.31 TCGA-F5-6814-01 13 111134902 111134902 T C COL4A2 Missense_Mutation p.M933T 0.11 benign(0.305) TCGA-F5-6814-01 13 111372367 111372367 A C ING1 3'UTR 0.10 TCGA-F5-6814-01 13 111546541 111546541 G T ANKRD10 Intron 0.41 TCGA-F5-6814-01 13 112723421 112723421 C T SOX1 3'UTR 0.16 TCGA-F5-6814-01 13 112723810 112723810 T G SOX1 3'UTR 0.61 TCGA-F5-6814-01 13 112724034 112724034 C A SOX1 3'UTR 0.31 TCGA-F5-6814-01 13 113181326 113181326 T G TUBGCP3 Missense_Mutation p.Q495H 0.10 tolerated(0.13) benign(0.223) TCGA-F5-6814-01 13 113210482 113210482 C T TUBGCP3 Missense_Mutation p.R202Q 0.27 deleterious(0.01) possibly_damaging(0.842) TCGA-F5-6814-01 13 113210500 113210500 C T TUBGCP3 Missense_Mutation p.R196Q 0.48 deleterious(0.03) benign(0.071) TCGA-F5-6814-01 13 113219480 113219480 C T TUBGCP3 Missense_Mutation p.R66Q 0.54 tolerated(0.16) benign(0.412) TCGA-F5-6814-01 13 113488969 113488969 C T ATP11A Silent p.I542I 0.28 TCGA-F5-6814-01 13 113633980 113633980 C T MCF2L Intron 0.24 TCGA-F5-6814-01 13 113698994 113698994 C T MCF2L Intron 0.32 TCGA-F5-6814-01 13 113795250 113795250 A G F10 Missense_Mutation p.S130G 0.38 tolerated(0.16) possibly_damaging(0.823) TCGA-F5-6814-01 13 113803327 113803327 C T F10 Silent p.F321F 0.28 TCGA-F5-6814-01 13 113965050 113965050 G T LAMP1 Missense_Mutation p.D144Y 0.38 deleterious(0.01) probably_damaging(0.994) TCGA-F5-6814-01 13 114303819 114303819 T G ATP4B Missense_Mutation p.K249T 0.18 deleterious(0.03) possibly_damaging(0.511) TCGA-F5-6814-01 13 114321710 114321710 C T GRK1 Silent p.F3F 0.43 TCGA-F5-6814-01 13 114503866 114503866 G T TMEM255B Missense_Mutation p.D164Y 0.29 tolerated(0.14) probably_damaging(0.994) TCGA-F5-6814-01 13 114504659 114504659 C T TMEM255B Silent p.I181I 0.12 TCGA-F5-6814-01 13 115070355 115070355 C T UPF3A Missense_Mutation p.S465L 0.49 tolerated(0.11) benign(0.041) TCGA-F5-6814-01 13 115089543 115089543 A G CHAMP1 Missense_Mutation p.N76D 0.07 deleterious(0.01) possibly_damaging(0.716) TCGA-F5-6814-01 13 20000658 20000658 C A TPTE2 Splice_Site p.X435_splice 0.25 TCGA-F5-6814-01 13 20246061 20246061 T C MPHOSPH8 3'UTR 0.43 TCGA-F5-6814-01 13 20277325 20277325 C T PSPC1 Missense_Mutation p.R521H 0.30 tolerated(0.15) benign(0.277) TCGA-F5-6814-01 13 20325418 20325418 C A PSPC1 Missense_Mutation p.M320I 0.21 deleterious(0.03) benign(0.04) TCGA-F5-6814-01 13 20411737 20411737 T G ZMYM5 Missense_Mutation p.K366T 0.32 tolerated_low_confidence(0.41) unknown(0) TCGA-F5-6814-01 13 20567378 20567378 G T ZMYM2 Missense_Mutation p.D56Y 0.38 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-F5-6814-01 13 20637093 20637093 G A ZMYM2 Missense_Mutation p.E1007K 0.24 deleterious(0.03) probably_damaging(0.986) TCGA-F5-6814-01 13 20717299 20717299 G A GJA3 Silent p.D43D 0.21 TCGA-F5-6814-01 13 21306139 21306139 A C N6AMT2 Missense_Mutation p.F117V 0.38 deleterious(0.03) probably_damaging(0.909) TCGA-F5-6814-01 13 21306144 21306144 A C N6AMT2 Missense_Mutation p.F115C 0.11 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 13 21620101 21620101 A C LATS2 Missense_Mutation p.I22S 0.18 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 13 21721576 21721576 A C SAP18 3'UTR 0.13 TCGA-F5-6814-01 13 21742284 21742284 A G SKA3 Missense_Mutation p.S196P 0.05 tolerated(0.13) benign(0.045) TCGA-F5-6814-01 13 21746795 21746795 A C SKA3 Missense_Mutation p.I43M 0.40 deleterious(0) probably_damaging(0.915) TCGA-F5-6814-01 13 22246084 22246084 C A FGF9 Missense_Mutation p.F11L 0.41 tolerated_low_confidence(0.8) benign(0.001) TCGA-F5-6814-01 13 22275371 22275371 G T FGF9 Nonsense_Mutation p.E142* 0.31 TCGA-F5-6814-01 13 23904498 23904498 G A SACS Missense_Mutation p.A4506V 0.35 probably_damaging(0.994) TCGA-F5-6814-01 13 23905194 23905194 C A SACS Missense_Mutation p.R4274I 0.27 probably_damaging(0.991) TCGA-F5-6814-01 13 23906144 23906144 A C SACS Missense_Mutation p.F3957L 0.30 probably_damaging(0.952) TCGA-F5-6814-01 13 23907118 23907118 A C SACS Missense_Mutation p.F3633V 0.24 probably_damaging(0.977) TCGA-F5-6814-01 13 23907500 23907500 T C SACS Silent p.S3505S 0.14 TCGA-F5-6814-01 13 23908506 23908506 C T SACS Missense_Mutation p.R3170Q 0.46 benign(0.089) TCGA-F5-6814-01 13 23909929 23909929 T G SACS Missense_Mutation p.T2696P 0.35 probably_damaging(0.997) TCGA-F5-6814-01 13 23911438 23911438 C T SACS Missense_Mutation p.D2193N 0.34 probably_damaging(0.995) TCGA-F5-6814-01 13 23913399 23913399 G A SACS Missense_Mutation p.T1539I 0.20 probably_damaging(0.996) TCGA-F5-6814-01 13 23914209 23914209 G T SACS Missense_Mutation p.S1269Y 0.42 benign(0.406) TCGA-F5-6814-01 13 23928014 23928014 A G SACS Missense_Mutation p.S699P 0.29 benign(0.005) TCGA-F5-6814-01 13 23985364 23985364 C A SACS Missense_Mutation p.E5D 0.39 benign(0) TCGA-F5-6814-01 13 24164288 24164288 G T TNFRSF19 Splice_Site 0.31 TCGA-F5-6814-01 13 24797071 24797071 A C SPATA13 Missense_Mutation p.T2P 0.11 deleterious_low_confidence(0.01) benign(0.143) TCGA-F5-6814-01 13 24823640 24823640 G A SPATA13 Missense_Mutation p.R560Q 0.24 tolerated_low_confidence(0.19) benign(0.024) TCGA-F5-6814-01 13 24845023 24845023 T A SPATA13 Intron 0.41 TCGA-F5-6814-01 13 25285015 25285015 A C ATP12A Missense_Mutation p.S1001R 0.27 tolerated(1) benign(0.096) TCGA-F5-6814-01 13 25352452 25352452 G A RNF17 Missense_Mutation p.D113N 0.45 tolerated_low_confidence(0.07) probably_damaging(0.956) TCGA-F5-6814-01 13 25353832 25353832 G T RNF17 Nonsense_Mutation p.E153* 0.28 TCGA-F5-6814-01 13 25362210 25362210 G T RNF17 Missense_Mutation p.E232D 0.34 tolerated(0.05) benign(0.037) TCGA-F5-6814-01 13 25370310 25370310 G T RNF17 Missense_Mutation p.D426Y 0.42 deleterious(0.02) benign(0.068) TCGA-F5-6814-01 13 25457335 25457335 G A CENPJ Silent p.L1333L 0.36 TCGA-F5-6814-01 13 25480406 25480406 A C CENPJ Missense_Mutation p.F590L 0.22 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 13 25480675 25480675 C A CENPJ Nonsense_Mutation p.E501* 0.22 TCGA-F5-6814-01 13 25745584 25745584 C T AMER2 Silent p.P58P 0.57 TCGA-F5-6814-01 13 25823346 25823346 C A MTMR6 3'UTR 0.46 TCGA-F5-6814-01 13 25831929 25831929 G A MTMR6 Missense_Mutation p.S305L 0.14 deleterious(0) possibly_damaging(0.836) TCGA-F5-6814-01 13 26151236 26151236 G A ATP8A2 Missense_Mutation p.R581Q 0.45 deleterious(0.01) possibly_damaging(0.802) TCGA-F5-6814-01 13 26343362 26343362 G A ATP8A2 Missense_Mutation p.A855T 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 13 26788181 26788181 T G RNF6 Missense_Mutation p.N613T 0.26 deleterious(0.03) probably_damaging(0.958) TCGA-F5-6814-01 13 26789060 26789060 C T RNF6 Missense_Mutation p.G320D 0.16 tolerated(0.62) benign(0.002) TCGA-F5-6814-01 13 26967567 26967567 G A CDK8 Missense_Mutation p.R237Q 0.30 deleterious(0.04) benign(0.109) TCGA-F5-6814-01 13 27239234 27239234 C A WASF3 Missense_Mutation p.S68Y 0.30 deleterious(0) probably_damaging(0.959) TCGA-F5-6814-01 13 27333482 27333482 G A GPR12 Silent p.L161L 0.36 TCGA-F5-6814-01 13 27680051 27680051 G T USP12 Missense_Mutation p.L54I 0.45 tolerated(0.15) possibly_damaging(0.536) TCGA-F5-6814-01 13 27828396 27828396 A C RPL21 Missense_Mutation p.K36T 0.40 deleterious(0.03) probably_damaging(0.949) TCGA-F5-6814-01 13 28636087 28636087 G A FLT3 Silent p.V95V 0.33 TCGA-F5-6814-01 13 28854577 28854577 C T PAN3 Nonsense_Mutation p.R740* 0.15 TCGA-F5-6814-01 13 28893668 28893668 G A FLT1 Nonsense_Mutation p.R1060* 0.35 TCGA-F5-6814-01 13 28942769 28942769 C T FLT1 Intron 0.16 TCGA-F5-6814-01 13 29005299 29005299 G T FLT1 Missense_Mutation p.S321Y 0.27 deleterious(0.02) probably_damaging(0.953) TCGA-F5-6814-01 13 29252186 29252186 G A POMP Missense_Mutation p.E125K 0.40 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 13 29598832 29598832 G T MTUS2 Missense_Mutation p.L9F 0.20 tolerated_low_confidence(0.92) benign(0.148) TCGA-F5-6814-01 13 30077138 30077138 C T MTUS2 Missense_Mutation p.S1312L 0.09 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 13 30077276 30077276 C A MTUS2 Missense_Mutation p.S1358Y 0.59 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 13 30782773 30782773 T G KATNAL1 Silent p.G459G 0.32 TCGA-F5-6814-01 13 30815127 30815127 C T KATNAL1 Missense_Mutation p.D197N 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 31231786 31231786 T G USPL1 Missense_Mutation p.S524R 0.26 deleterious(0.01) possibly_damaging(0.533) TCGA-F5-6814-01 13 31233400 31233400 C T USPL1 Silent p.F1062F 0.62 TCGA-F5-6814-01 13 31711623 31711623 C T HSPH1 Silent p.P803P 0.29 TCGA-F5-6814-01 13 32365959 32365959 C T RXFP2 Nonsense_Mutation p.R388* 0.34 TCGA-F5-6814-01 13 32376591 32376591 A G RXFP2 3'UTR 0.20 TCGA-F5-6814-01 13 32527172 32527172 G A EEF1DP3 RNA 0.33 TCGA-F5-6814-01 13 32691597 32691597 A G FRY Missense_Mutation p.N151D 0.36 tolerated(0.18) benign(0.004) TCGA-F5-6814-01 13 32698466 32698466 G A FRY Missense_Mutation p.A170T 0.11 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 13 32698819 32698819 G T FRY Splice_Site p.X212_splice 0.37 TCGA-F5-6814-01 13 32705917 32705917 A T FRY Missense_Mutation p.K275N 0.10 deleterious(0.03) probably_damaging(0.966) TCGA-F5-6814-01 13 32808831 32808831 C T FRY Missense_Mutation p.A1883V 0.17 deleterious(0.03) possibly_damaging(0.561) TCGA-F5-6814-01 13 32813924 32813924 C T FRY Missense_Mutation p.T2198M 0.36 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 13 32823698 32823698 G T FRY Missense_Mutation p.Q2348H 0.33 tolerated(0.46) benign(0.002) TCGA-F5-6814-01 13 32882895 32882895 A C ZAR1L Silent p.V250V 0.11 TCGA-F5-6814-01 13 32910656 32910656 A C BRCA2 Missense_Mutation p.K722Q 0.41 deleterious(0.01) benign(0.373) TCGA-F5-6814-01 13 32911633 32911633 T G BRCA2 Missense_Mutation p.I1047M 0.26 deleterious(0) benign(0.281) TCGA-F5-6814-01 13 32913282 32913282 C A BRCA2 Missense_Mutation p.S1597Y 0.24 tolerated(0.62) benign(0.063) TCGA-F5-6814-01 13 32929122 32929122 T G BRCA2 Missense_Mutation p.S2378A 0.22 tolerated(0.15) possibly_damaging(0.539) TCGA-F5-6814-01 13 32930610 32930610 G A BRCA2 Missense_Mutation p.R2494Q 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 13 32937348 32937348 C T BRCA2 Missense_Mutation p.S2670L 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 32971072 32971072 T G BRCA2 Missense_Mutation p.L3180R 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 32977276 32977276 C T N4BP2L1 Missense_Mutation p.D179N 0.43 tolerated(0.51) benign(0.001) TCGA-F5-6814-01 13 33016813 33016813 C T N4BP2L2 Missense_Mutation p.E621K 0.25 tolerated(1) benign(0.001) TCGA-F5-6814-01 13 33017924 33017924 C A N4BP2L2 Missense_Mutation p.K250N 0.31 deleterious(0.04) possibly_damaging(0.898) TCGA-F5-6814-01 13 33018029 33018029 G A N4BP2L2 Silent p.V215V 0.34 TCGA-F5-6814-01 13 33110498 33110498 C A N4BP2L2 Intron 0.42 TCGA-F5-6814-01 13 33679625 33679625 C T STARD13 3'UTR 0.25 TCGA-F5-6814-01 13 35733720 35733720 G T NBEA Missense_Mutation p.D1138Y 0.23 deleterious_low_confidence(0.02) benign(0.087) TCGA-F5-6814-01 13 35735947 35735947 C T NBEA Nonsense_Mutation p.R1308* 0.43 TCGA-F5-6814-01 13 35770201 35770201 G A NBEA Missense_Mutation p.E1710K 0.33 deleterious_low_confidence(0.04) benign(0.097) TCGA-F5-6814-01 13 35770316 35770316 A C NBEA Missense_Mutation p.K1748T 0.28 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-F5-6814-01 13 36049788 36049788 C T MAB21L1 Missense_Mutation p.R163Q 0.10 tolerated(0.31) possibly_damaging(0.716) TCGA-F5-6814-01 13 36049807 36049807 C T MAB21L1 Missense_Mutation p.E157K 0.13 tolerated(0.06) possibly_damaging(0.895) TCGA-F5-6814-01 13 36424854 36424854 C A DCLK1 Intron 0.37 TCGA-F5-6814-01 13 37014128 37014128 G A CCNA1 Silent p.E302E 0.20 TCGA-F5-6814-01 13 37270462 37270462 T C SERTM1 3'UTR 0.21 TCGA-F5-6814-01 13 37271824 37271824 T G SERTM1 3'UTR 0.11 TCGA-F5-6814-01 13 37271831 37271831 C T SERTM1 3'UTR 0.39 TCGA-F5-6814-01 13 37583813 37583813 A C SUPT20H Missense_Mutation p.F779C 0.27 deleterious_low_confidence(0) benign(0.085) TCGA-F5-6814-01 13 37598524 37598524 C T SUPT20H Missense_Mutation p.R462Q 0.42 tolerated(0.18) benign(0.426) TCGA-F5-6814-01 13 37678912 37678912 G T CSNK1A1L Missense_Mutation p.A161D 0.09 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-F5-6814-01 13 37678997 37678997 G T CSNK1A1L Missense_Mutation p.L133I 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-F5-6814-01 13 38137276 38137276 G T POSTN 3'UTR 0.46 TCGA-F5-6814-01 13 38153189 38153189 T C POSTN Missense_Mutation p.I621V 0.12 tolerated(0.61) possibly_damaging(0.802) TCGA-F5-6814-01 13 38153366 38153366 T G POSTN Missense_Mutation p.E597D 0.22 tolerated(0.21) benign(0.074) TCGA-F5-6814-01 13 38162027 38162027 T G POSTN Missense_Mutation p.K180Q 0.22 deleterious(0) probably_damaging(0.955) TCGA-F5-6814-01 13 38211670 38211670 C T TRPC4 Silent p.S773S 0.10 TCGA-F5-6814-01 13 38357312 38357312 C A TRPC4 Missense_Mutation p.E53D 0.26 deleterious(0.04) benign(0.279) TCGA-F5-6814-01 13 38357459 38357459 G T TRPC4 Missense_Mutation p.F4L 0.36 tolerated_low_confidence(1) benign(0.008) TCGA-F5-6814-01 13 39261438 39261438 C T FREM2 5'UTR 0.19 TCGA-F5-6814-01 13 39261797 39261797 G A FREM2 Missense_Mutation p.A106T 0.29 tolerated(0.65) benign(0.001) TCGA-F5-6814-01 13 39264276 39264276 A G FREM2 Missense_Mutation p.N932S 0.38 tolerated(1) benign(0.01) TCGA-F5-6814-01 13 39264766 39264766 C T FREM2 Silent p.V1095V 0.23 TCGA-F5-6814-01 13 39430305 39430305 T C FREM2 Missense_Mutation p.I2323T 0.31 deleterious(0) probably_damaging(0.946) TCGA-F5-6814-01 13 39438677 39438677 C T FREM2 Silent p.F2639F 0.44 TCGA-F5-6814-01 13 39448621 39448621 T C FREM2 Missense_Mutation p.S2727P 0.21 deleterious(0.03) benign(0.188) TCGA-F5-6814-01 13 39541004 39541004 G A STOML3 Silent p.G278G 0.47 TCGA-F5-6814-01 13 39542650 39542650 C T STOML3 Missense_Mutation p.E180K 0.18 tolerated(0.1) benign(0.04) TCGA-F5-6814-01 13 41134687 41134687 C T FOXO1 Missense_Mutation p.R314H 0.11 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 13 41373368 41373368 G T SLC25A15 Missense_Mutation p.E77D 0.23 deleterious(0) possibly_damaging(0.838) TCGA-F5-6814-01 13 41381513 41381513 G A SLC25A15 Missense_Mutation p.R179Q 0.36 tolerated(0.14) benign(0.199) TCGA-F5-6814-01 13 41507587 41507587 C T ELF1 Missense_Mutation p.E612K 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.512) TCGA-F5-6814-01 13 41523971 41523971 G T ELF1 Nonsense_Mutation p.S167* 0.10 TCGA-F5-6814-01 13 41636822 41636822 C A WBP4 Nonsense_Mutation p.Y15* 0.33 TCGA-F5-6814-01 13 41656950 41656950 C T WBP4 Missense_Mutation p.S344F 0.14 deleterious(0) possibly_damaging(0.86) TCGA-F5-6814-01 13 41828724 41828724 C A MTRF1 Nonsense_Mutation p.E150* 0.34 TCGA-F5-6814-01 13 41891041 41891041 G A NAA16 Silent p.S38S 0.38 TCGA-F5-6814-01 13 41899964 41899964 A C NAA16 Missense_Mutation p.K223T 0.27 deleterious(0.02) possibly_damaging(0.706) TCGA-F5-6814-01 13 42041040 42041040 T A RGCC Missense_Mutation p.L106H 0.11 deleterious_low_confidence(0.05) probably_damaging(0.983) TCGA-F5-6814-01 13 43180736 43180736 C A TNFSF11 Silent p.G212G 0.27 TCGA-F5-6814-01 13 43918711 43918711 C A ENOX1 Missense_Mutation p.E333D 0.39 tolerated(0.24) benign(0.008) TCGA-F5-6814-01 13 43935460 43935460 C A ENOX1 Nonsense_Mutation p.E113* 0.35 TCGA-F5-6814-01 13 44411448 44411448 C T CCDC122 Missense_Mutation p.E264K 0.22 deleterious(0.03) possibly_damaging(0.752) TCGA-F5-6814-01 13 45148203 45148203 C T TSC22D1 Missense_Mutation p.G670R 0.31 tolerated(0.6) benign(0.277) TCGA-F5-6814-01 13 45515438 45515438 C T NUFIP1 Missense_Mutation p.R464Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 13 45517676 45517676 C A NUFIP1 Missense_Mutation p.K424N 0.41 tolerated(0.24) benign(0.004) TCGA-F5-6814-01 13 45533544 45533544 A C NUFIP1 Silent p.P331P 0.19 TCGA-F5-6814-01 13 45914467 45914467 A G TPT1 Intron 0.50 TCGA-F5-6814-01 13 46119106 46119106 G A FAM194B Missense_Mutation p.S554F 0.34 tolerated(0.71) benign(0.195) TCGA-F5-6814-01 13 46542110 46542110 G A ZC3H13 Nonsense_Mutation p.R1284* 0.31 TCGA-F5-6814-01 13 46559794 46559794 C T ZC3H13 Missense_Mutation p.R453Q 0.39 unknown(0) TCGA-F5-6814-01 13 46652987 46652987 G A CPB2 Missense_Mutation p.T145I 0.35 deleterious(0) benign(0.151) TCGA-F5-6814-01 13 46917520 46917520 T G KIAA0226L Nonstop_Mutation p.*663Cext*3 0.32 TCGA-F5-6814-01 13 46946243 46946243 T G KIAA0226L Missense_Mutation p.K123T 0.09 tolerated(0.09) benign(0.066) TCGA-F5-6814-01 13 47011649 47011649 C A PPP1R2P4 RNA 0.12 TCGA-F5-6814-01 13 47243167 47243167 G A LRCH1 Missense_Mutation p.R152Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 13 47324767 47324767 G A LRCH1 Silent p.T691T 0.29 TCGA-F5-6814-01 13 47365556 47365556 C A ESD Splice_Site 0.09 TCGA-F5-6814-01 13 47409495 47409495 G A HTR2A Missense_Mutation p.S298L 0.40 tolerated(0.14) possibly_damaging(0.764) TCGA-F5-6814-01 13 48528666 48528666 A C SUCLA2 Missense_Mutation p.F277V 0.32 deleterious(0.02) benign(0.287) TCGA-F5-6814-01 13 48941654 48941654 G A RB1 Missense_Mutation p.E322K 0.34 deleterious(0.01) benign(0.37) TCGA-F5-6814-01 13 48985591 48985591 C A LPAR6 Missense_Mutation p.E323D 0.52 tolerated(0.19) benign(0.001) TCGA-F5-6814-01 13 49030397 49030397 T G RB1 Silent p.S624S 0.12 TCGA-F5-6814-01 13 49050942 49050942 C T RB1 Missense_Mutation p.R876C 0.13 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 13 49064190 49064190 C A RCBTB2 3'UTR 0.28 TCGA-F5-6814-01 13 49075883 49075883 C A RCBTB2 Missense_Mutation p.K413N 0.57 deleterious(0) possibly_damaging(0.486) TCGA-F5-6814-01 13 49281995 49281995 G T CYSLTR2 3'UTR 0.23 TCGA-F5-6814-01 13 49282603 49282603 G A CYSLTR2 3'UTR 0.32 TCGA-F5-6814-01 13 49794942 49794942 G A MLNR Missense_Mutation p.A157T 0.62 tolerated(0.14) benign(0.118) TCGA-F5-6814-01 13 49924992 49924992 C T CAB39L Missense_Mutation p.R151Q 0.37 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 13 50205194 50205194 C A ARL11 3'UTR 0.12 TCGA-F5-6814-01 13 50205577 50205577 A C ARL11 3'UTR 0.37 TCGA-F5-6814-01 13 50283714 50283714 T C KPNA3 Missense_Mutation p.I342M 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 50488999 50488999 A C SPRYD7 3'UTR 0.62 TCGA-F5-6814-01 13 50589444 50589444 G A TRIM13 3'Flank 0.11 TCGA-F5-6814-01 13 51591198 51591198 C A GUCY1B2 Intron 0.19 TCGA-F5-6814-01 13 51599479 51599479 G A RNA5SP29 3'Flank 0.50 TCGA-F5-6814-01 13 51936266 51936266 A C SERPINE3 3'Flank 0.45 TCGA-F5-6814-01 13 51941958 51941958 G T INTS6 Silent p.V851V 0.26 TCGA-F5-6814-01 13 51943112 51943112 T C INTS6 Silent p.K813K 0.19 TCGA-F5-6814-01 13 52025278 52025278 C A INTS6 Missense_Mutation p.M74I 0.24 deleterious(0.02) benign(0.342) TCGA-F5-6814-01 13 52332385 52332385 C T WDFY2 Silent p.F374F 0.39 TCGA-F5-6814-01 13 52513324 52513324 G A ATP7B Missense_Mutation p.L1188F 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 52534401 52534401 C A ATP7B Missense_Mutation p.M668I 0.11 deleterious(0.04) probably_damaging(0.949) TCGA-F5-6814-01 13 52606845 52606845 T G UTP14C 3'UTR 0.21 TCGA-F5-6814-01 13 52607148 52607148 A C UTP14C 3'UTR 0.31 TCGA-F5-6814-01 13 52684658 52684658 T G NEK5 Missense_Mutation p.K123T 0.27 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 52718076 52718076 G A NEK3 Missense_Mutation p.S284L 0.38 tolerated(0.18) benign(0.004) TCGA-F5-6814-01 13 52855074 52855074 G T RP11-248G5.8 RNA 0.20 TCGA-F5-6814-01 13 52951567 52951567 G A THSD1 Silent p.S846S 0.50 TCGA-F5-6814-01 13 52951789 52951789 C T THSD1 Silent p.R772R 0.50 TCGA-F5-6814-01 13 52952514 52952514 G A THSD1 Missense_Mutation p.R531C 0.39 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 13 53261890 53261890 T G SUGT1 Missense_Mutation p.L340V 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 53282703 53282703 A G LECT1 Missense_Mutation p.S253P 0.11 tolerated(0.21) benign(0.122) TCGA-F5-6814-01 13 53307403 53307403 T G LECT1 Missense_Mutation p.K102T 0.23 tolerated(0.07) benign(0.32) TCGA-F5-6814-01 13 58240817 58240817 G T PCDH17 Nonsense_Mutation p.E883* 0.37 TCGA-F5-6814-01 13 58299245 58299245 C A PCDH17 Silent p.V1099V 0.21 TCGA-F5-6814-01 13 60554943 60554943 C A DIAPH3 Nonsense_Mutation p.E511* 0.20 TCGA-F5-6814-01 13 60557938 60557938 C T DIAPH3 Missense_Mutation p.R482Q 0.11 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 13 60582740 60582740 T G DIAPH3 Missense_Mutation p.K318Q 0.15 tolerated(0.16) benign(0.155) TCGA-F5-6814-01 13 61102603 61102603 G A TDRD3 Missense_Mutation p.R415Q 0.15 deleterious(0.02) possibly_damaging(0.761) TCGA-F5-6814-01 13 61986250 61986250 A C PCDH20 Missense_Mutation p.I661S 0.17 deleterious(0) probably_damaging(0.93) TCGA-F5-6814-01 13 61986303 61986303 G A PCDH20 Silent p.D643D 0.26 TCGA-F5-6814-01 13 67801667 67801667 G T PCDH9 Silent p.L302L 0.26 TCGA-F5-6814-01 13 70281775 70281775 T G KLHL1 Missense_Mutation p.Q723H 0.42 tolerated(0.08) benign(0.275) TCGA-F5-6814-01 13 70681622 70681622 C A KLHL1 Missense_Mutation p.K70N 0.38 tolerated_low_confidence(0.19) benign(0.175) TCGA-F5-6814-01 13 72063152 72063152 C T DACH1 Missense_Mutation p.E569K 0.42 probably_damaging(0.964) TCGA-F5-6814-01 13 72131162 72131162 C A DACH1 Nonsense_Mutation p.E524* 0.36 TCGA-F5-6814-01 13 73337650 73337650 C T DIS3 Missense_Mutation p.R689Q 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 73347916 73347916 C T DIS3 Missense_Mutation p.R382Q 0.46 deleterious(0.01) benign(0.021) TCGA-F5-6814-01 13 73351626 73351626 C A DIS3 Nonsense_Mutation p.E196* 0.22 TCGA-F5-6814-01 13 74289537 74289537 G T KLF12 Missense_Mutation p.S332Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 13 75884184 75884184 C A TBC1D4 Missense_Mutation p.K829N 0.10 tolerated(0.4) benign(0.155) TCGA-F5-6814-01 13 75936195 75936195 C T TBC1D4 Silent p.S349S 0.23 TCGA-F5-6814-01 13 76374898 76374898 G T LMO7 5'UTR 0.24 TCGA-F5-6814-01 13 76409458 76409458 G A LMO7 Missense_Mutation p.E873K 0.23 tolerated(0.07) possibly_damaging(0.727) TCGA-F5-6814-01 13 78178548 78178548 G A SCEL Silent p.T385T 0.36 TCGA-F5-6814-01 13 78327425 78327425 G A SLAIN1 Missense_Mutation p.R285Q 0.09 deleterious(0.01) possibly_damaging(0.776) TCGA-F5-6814-01 13 78327488 78327488 C A SLAIN1 Missense_Mutation p.S306Y 0.34 deleterious(0) probably_damaging(0.919) TCGA-F5-6814-01 13 78470769 78470769 C T EDNRB 3'UTR 0.46 TCGA-F5-6814-01 13 79929436 79929436 T G RBM26 Missense_Mutation p.E591D 0.42 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 13 88328206 88328206 T G SLITRK5 Missense_Mutation p.L188R 0.11 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 13 88328428 88328428 T C SLITRK5 Missense_Mutation p.V262A 0.42 deleterious(0) benign(0.241) TCGA-F5-6814-01 13 88328541 88328541 T C SLITRK5 Silent p.L300L 0.27 TCGA-F5-6814-01 13 88331067 88331067 C A SLITRK5 3'UTR 0.23 TCGA-F5-6814-01 13 92003374 92003374 G A MIR17HG RNA 0.29 TCGA-F5-6814-01 13 92003516 92003516 A C MIR17HG RNA 0.08 TCGA-F5-6814-01 13 93518766 93518766 G T GPC5 3'UTR 0.19 TCGA-F5-6814-01 13 95092158 95092158 T G DCT Missense_Mutation p.E551D 0.29 tolerated_low_confidence(0.14) benign(0.02) TCGA-F5-6814-01 13 95230990 95230990 C A TGDS Missense_Mutation p.R218M 0.34 deleterious(0.04) possibly_damaging(0.711) TCGA-F5-6814-01 13 95723919 95723919 T C ABCC4 Silent p.E1069E 0.24 TCGA-F5-6814-01 13 95886989 95886989 C T ABCC4 Missense_Mutation p.A136T 0.33 tolerated(0.39) benign(0.017) TCGA-F5-6814-01 13 96242593 96242593 G A DZIP1 Nonsense_Mutation p.R595* 0.79 TCGA-F5-6814-01 13 96277088 96277088 T C DZIP1 Silent p.E302E 0.11 TCGA-F5-6814-01 13 96285549 96285549 C A DZIP1 Missense_Mutation p.M208I 0.27 deleterious(0.04) benign(0.05) TCGA-F5-6814-01 13 96508474 96508474 G T UGGT2 Missense_Mutation p.L1316I 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 13 96536860 96536860 T G UGGT2 Missense_Mutation p.K1038T 0.35 deleterious(0.01) benign(0.17) TCGA-F5-6814-01 13 96622470 96622470 G C UGGT2 Missense_Mutation p.R411G 0.09 deleterious(0.02) benign(0.061) TCGA-F5-6814-01 13 96636078 96636078 C A UGGT2 Nonsense_Mutation p.E358* 0.21 TCGA-F5-6814-01 13 96642326 96642326 C A UGGT2 Nonsense_Mutation p.E278* 0.23 TCGA-F5-6814-01 13 96675973 96675973 A C UGGT2 Silent p.A94A 0.16 TCGA-F5-6814-01 13 98828565 98828565 G A RNF113B Missense_Mutation p.A309V 0.26 deleterious(0.02) benign(0.034) TCGA-F5-6814-01 13 98828870 98828870 G A RNF113B Silent p.F207F 0.16 TCGA-F5-6814-01 13 98996098 98996098 T G FARP1 Missense_Mutation p.F85C 0.20 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 13 99116037 99116037 C A STK24 Missense_Mutation p.K291N 0.39 deleterious(0.01) possibly_damaging(0.508) TCGA-F5-6814-01 13 99358477 99358477 C T SLC15A1 Missense_Mutation p.E394K 0.18 tolerated(0.07) benign(0.329) TCGA-F5-6814-01 13 99532165 99532165 T C DOCK9 Missense_Mutation p.N977S 0.23 tolerated(0.66) benign(0.03) TCGA-F5-6814-01 13 99853690 99853690 G T UBAC2 Intron 0.09 TCGA-F5-6814-01 13 99896108 99896108 G T UBAC2 Missense_Mutation p.R61I 0.20 deleterious(0) possibly_damaging(0.762) TCGA-F5-6814-01 14 100364597 100364597 G A EML1 Silent p.T304T 0.34 TCGA-F5-6814-01 14 100826905 100826905 G T WARS Silent p.I136I 0.29 TCGA-F5-6814-01 14 100826958 100826958 G A WARS Nonsense_Mutation p.R119* 0.33 TCGA-F5-6814-01 14 100828251 100828251 A C WARS Missense_Mutation p.I36S 0.27 deleterious_low_confidence(0) possibly_damaging(0.661) TCGA-F5-6814-01 14 101348105 101348105 C T RTL1 Silent p.R1007R 0.47 TCGA-F5-6814-01 14 101348236 101348236 C T RTL1 Missense_Mutation p.V964I 0.24 tolerated(0.24) probably_damaging(0.992) TCGA-F5-6814-01 14 101348686 101348686 C T RTL1 Missense_Mutation p.E814K 0.53 tolerated(0.17) benign(0.047) TCGA-F5-6814-01 14 101348946 101348946 A C RTL1 Missense_Mutation p.F727C 0.10 tolerated(0.1) benign(0.006) TCGA-F5-6814-01 14 101350497 101350497 C T RTL1 Missense_Mutation p.R210H 0.41 tolerated(0.07) probably_damaging(0.92) TCGA-F5-6814-01 14 101492133 101492133 G A MIR323A RNA 0.44 TCGA-F5-6814-01 14 101500120 101500120 A G MIR495 RNA 0.29 TCGA-F5-6814-01 14 101531977 101531977 G A MIR369 RNA 0.27 TCGA-F5-6814-01 14 102028551 102028551 G A DIO3 Missense_Mutation p.A240T 0.21 tolerated(0.18) benign(0.024) TCGA-F5-6814-01 14 102029119 102029119 G T DIO3 3'UTR 0.40 TCGA-F5-6814-01 14 102029791 102029791 C T DIO3 3'Flank 0.52 TCGA-F5-6814-01 14 102493999 102493999 C T DYNC1H1 Missense_Mutation p.T3031M 0.37 probably_damaging(0.996) TCGA-F5-6814-01 14 102499472 102499472 C T DYNC1H1 Missense_Mutation p.R3384W 0.41 probably_damaging(0.995) TCGA-F5-6814-01 14 102514854 102514854 A G DYNC1H1 Missense_Mutation p.D4407G 0.13 possibly_damaging(0.859) TCGA-F5-6814-01 14 103390060 103390060 C T AMN Missense_Mutation p.A19V 0.55 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 14 103596730 103596730 G T TNFAIP2 Nonsense_Mutation p.E393* 0.30 TCGA-F5-6814-01 14 103597399 103597399 G A TNFAIP2 Missense_Mutation p.A404T 0.27 tolerated(0.3) benign(0.037) TCGA-F5-6814-01 14 103802222 103802222 G A EIF5 Missense_Mutation p.V9M 0.22 deleterious(0.01) possibly_damaging(0.849) TCGA-F5-6814-01 14 103803023 103803023 A C EIF5 Missense_Mutation p.K55T 0.43 deleterious(0) probably_damaging(0.94) TCGA-F5-6814-01 14 103804693 103804693 G T EIF5 Nonsense_Mutation p.E157* 0.33 TCGA-F5-6814-01 14 103932414 103932414 C T MARK3 Missense_Mutation p.R295C 0.16 deleterious(0.03) probably_damaging(1) TCGA-F5-6814-01 14 104120968 104120968 G T KLC1 Nonsense_Mutation p.E23* 0.22 TCGA-F5-6814-01 14 104245094 104245094 A G PPP1R13B Silent p.R114R 0.26 TCGA-F5-6814-01 14 104433057 104433057 G A TDRD9 Silent p.E218E 0.44 TCGA-F5-6814-01 14 105207579 105207579 C T ADSSL1 Silent p.F307F 0.33 TCGA-F5-6814-01 14 105404441 105404441 C T AHNAK2 Missense_Mutation p.D5783N 0.18 possibly_damaging(0.664) TCGA-F5-6814-01 14 105408267 105408267 C A AHNAK2 Missense_Mutation p.K4507N 0.35 probably_damaging(0.981) TCGA-F5-6814-01 14 105717196 105717196 T C BTBD6 3'UTR 0.10 TCGA-F5-6814-01 14 106206506 106206506 G A IGHG1 Missense_Mutation p.A337V 0.27 tolerated(0.19) benign(0.002) TCGA-F5-6814-01 14 106311841 106311841 T C IGHD Missense_Mutation p.I57M 0.24 tolerated(0.15) benign(0.002) TCGA-F5-6814-01 14 106351915 106351915 A C IGHD3-22 Nonsense_Mutation p.L2* 0.10 TCGA-F5-6814-01 14 106388498 106388498 G T KIAA0125 Nonstop_Mutation p.*137Yext*5 0.25 TCGA-F5-6814-01 14 106733553 106733553 G T IGHV1-24 Missense_Mutation p.F9L 0.50 tolerated(0.41) benign(0.016) TCGA-F5-6814-01 14 106791206 106791206 G T IGHV3-30 Missense_Mutation p.S50R 0.08 tolerated_low_confidence(0.06) benign(0.003) TCGA-F5-6814-01 14 106805279 106805279 G T IGHV4-31 Missense_Mutation p.S95Y 0.11 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-F5-6814-01 14 106805647 106805647 T C IGHV4-31 5'UTR 0.14 TCGA-F5-6814-01 14 106877815 106877815 T C IGHV4-39 Missense_Mutation p.Y60C 0.10 deleterious(0.04) benign(0.029) TCGA-F5-6814-01 14 106993880 106993880 C A IGHV3-48 Missense_Mutation p.K95N 0.44 deleterious_low_confidence(0.04) benign(0.231) TCGA-F5-6814-01 14 107178948 107178948 C A IGHV2-70 Missense_Mutation p.D77Y 0.40 deleterious(0.03) possibly_damaging(0.813) TCGA-F5-6814-01 14 107211360 107211360 A G IGHV3-73 Missense_Mutation p.V11A 0.38 deleterious_low_confidence(0.04) benign(0.017) TCGA-F5-6814-01 14 19378467 19378467 T C OR11H12 Missense_Mutation p.F292L 0.12 tolerated(0.05) benign(0.248) TCGA-F5-6814-01 14 19559150 19559150 G A POTEG Missense_Mutation p.E266K 0.14 deleterious(0) possibly_damaging(0.687) TCGA-F5-6814-01 14 20215602 20215602 G T OR4Q3 Missense_Mutation p.D6Y 0.17 tolerated(0.16) benign(0.34) TCGA-F5-6814-01 14 20248677 20248677 C A OR4M1 Missense_Mutation p.L66M 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 14 20248820 20248820 C A OR4M1 Missense_Mutation p.F113L 0.38 tolerated(0.15) benign(0.028) TCGA-F5-6814-01 14 20295755 20295755 A C OR4N2 Missense_Mutation p.K50Q 0.38 tolerated(0.37) benign(0.001) TCGA-F5-6814-01 14 20295794 20295794 C A OR4N2 Missense_Mutation p.L63M 0.14 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 14 20295870 20295870 C T OR4N2 Missense_Mutation p.A88V 0.29 deleterious(0.02) benign(0.009) TCGA-F5-6814-01 14 20389381 20389381 C A OR4K5 Missense_Mutation p.L206I 0.08 tolerated(0.99) possibly_damaging(0.699) TCGA-F5-6814-01 14 20444187 20444187 C A OR4K15 Silent p.L170L 0.14 TCGA-F5-6814-01 14 20612183 20612183 T G OR4N5 Missense_Mutation p.C97G 0.28 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 14 20665890 20665890 C A OR11G2 Missense_Mutation p.F132L 0.27 deleterious(0.01) benign(0.212) TCGA-F5-6814-01 14 20711236 20711236 C A OR11H4 Missense_Mutation p.L96I 0.09 tolerated(0.07) benign(0.077) TCGA-F5-6814-01 14 20943405 20943405 G A PNP Missense_Mutation p.A216T 0.36 deleterious(0.05) probably_damaging(0.968) TCGA-F5-6814-01 14 21058825 21058825 C T RNASE12 Missense_Mutation p.D20N 0.33 tolerated(0.15) benign(0.003) TCGA-F5-6814-01 14 21109007 21109007 T C OR6S1 Missense_Mutation p.T282A 0.16 deleterious(0.01) probably_damaging(0.914) TCGA-F5-6814-01 14 21249937 21249937 C T RNASE6 Missense_Mutation p.R27C 0.44 tolerated(0.06) possibly_damaging(0.759) TCGA-F5-6814-01 14 21490286 21490286 C A NDRG2 Missense_Mutation p.Q93H 0.52 deleterious(0.04) benign(0.4) TCGA-F5-6814-01 14 21679563 21679563 A G HNRNPC Splice_Site p.X279_splice 0.33 TCGA-F5-6814-01 14 21793439 21793439 G A RPGRIP1 Missense_Mutation p.R755H 0.37 tolerated(0.13) benign(0.04) TCGA-F5-6814-01 14 21796750 21796750 T G RPGRIP1 Nonsense_Mutation p.Y1021* 0.25 TCGA-F5-6814-01 14 21838604 21838604 A C SUPT16H Missense_Mutation p.I125S 0.24 deleterious(0) benign(0.342) TCGA-F5-6814-01 14 21869188 21869188 G A CHD8 Missense_Mutation p.R1406C 0.30 deleterious(0) possibly_damaging(0.854) TCGA-F5-6814-01 14 21964824 21964824 T C TOX4 3'UTR 0.40 TCGA-F5-6814-01 14 21971328 21971328 T C METTL3 Silent p.Q237Q 0.16 TCGA-F5-6814-01 14 22038339 22038339 G T OR10G3 Missense_Mutation p.F179L 0.28 deleterious(0.05) possibly_damaging(0.457) TCGA-F5-6814-01 14 23016450 23016450 T G TRAC Missense_Mutation p.I2S 0.48 deleterious(0) probably_damaging(0.975) TCGA-F5-6814-01 14 23313979 23313979 C T MMP14 Missense_Mutation p.R431C 0.33 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 14 23373526 23373526 T C RBM23 Missense_Mutation p.I292V 0.10 tolerated(0.13) benign(0.076) TCGA-F5-6814-01 14 23374845 23374845 C T RBM23 Missense_Mutation p.S142N 0.22 tolerated(0.06) possibly_damaging(0.844) TCGA-F5-6814-01 14 23380547 23380547 T G RBM23 Missense_Mutation p.K19T 0.32 deleterious_low_confidence(0) possibly_damaging(0.727) TCGA-F5-6814-01 14 23512601 23512601 T C PSMB11 3'UTR 0.19 TCGA-F5-6814-01 14 23535213 23535213 G A ACIN1 Missense_Mutation p.S815L 0.27 benign(0.002) TCGA-F5-6814-01 14 23548031 23548031 G A ACIN1 Missense_Mutation p.R727W 0.21 possibly_damaging(0.634) TCGA-F5-6814-01 14 23745700 23745700 G T HOMEZ Missense_Mutation p.A246D 0.45 tolerated_low_confidence(0.11) benign(0.319) TCGA-F5-6814-01 14 23777226 23777226 G A BCL2L2-PABPN1 Missense_Mutation p.D84N 0.39 tolerated_low_confidence(0.88) possibly_damaging(0.6) TCGA-F5-6814-01 14 23834216 23834216 C A EFS Splice_Site p.X6_splice 0.23 TCGA-F5-6814-01 14 23842233 23842233 G T IL25 5'UTR 0.29 TCGA-F5-6814-01 14 23893180 23893180 T C MYH7 Missense_Mutation p.D953G 0.37 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 14 23894180 23894180 T C MYH7 Missense_Mutation p.N826S 0.45 deleterious(0.05) possibly_damaging(0.712) TCGA-F5-6814-01 14 23900165 23900165 C A MYH7 Missense_Mutation p.E280D 0.21 deleterious(0) probably_damaging(0.945) TCGA-F5-6814-01 14 24459442 24459442 C A DHRS4L2 Silent p.V60V 0.26 TCGA-F5-6814-01 14 24518540 24518540 G A LRRC16B 5'Flank 0.34 TCGA-F5-6814-01 14 24617676 24617676 G T RNF31 Intron 0.29 TCGA-F5-6814-01 14 24679894 24679894 G T CHMP4A Missense_Mutation p.S190Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 14 24683186 24683186 A T MDP1 3'UTR 0.20 TCGA-F5-6814-01 14 24702347 24702347 A C GMPR2 5'UTR 0.33 TCGA-F5-6814-01 14 24706350 24706350 T G GMPR2 Missense_Mutation p.I198S 0.34 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 14 24738819 24738819 A C RABGGTA Missense_Mutation p.L170R 0.15 tolerated(0.76) possibly_damaging(0.886) TCGA-F5-6814-01 14 24774178 24774178 C T NOP9 Silent p.F596F 0.26 TCGA-F5-6814-01 14 24785078 24785078 T C LTB4R Missense_Mutation p.F74S 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 24786265 24786265 T G LTB4R 3'UTR 0.09 TCGA-F5-6814-01 14 24807220 24807220 C T RIPK3 Missense_Mutation p.E231K 0.55 tolerated(0.66) benign(0.046) TCGA-F5-6814-01 14 24879054 24879054 A C NYNRIN Missense_Mutation p.K685T 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.722) TCGA-F5-6814-01 14 24886007 24886007 G A NYNRIN Silent p.Q1684Q 0.30 TCGA-F5-6814-01 14 24886037 24886037 G A NYNRIN Silent p.G1694G 0.23 TCGA-F5-6814-01 14 28734466 28734466 C T BNIP3P1 RNA 0.33 TCGA-F5-6814-01 14 29261344 29261344 T G C14orf23 Missense_Mutation p.F127L 0.13 deleterious_low_confidence(0) benign(0.294) TCGA-F5-6814-01 14 29261458 29261458 G T C14orf23 Missense_Mutation p.K165N 0.31 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-F5-6814-01 14 30108080 30108080 G A PRKD1 Nonsense_Mutation p.R243* 0.46 TCGA-F5-6814-01 14 31346908 31346908 G A COCH Silent p.S71S 0.44 TCGA-F5-6814-01 14 31585511 31585511 A C HECTD1 Missense_Mutation p.L1850W 0.10 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 14 31597079 31597079 A G HECTD1 Silent p.G1631G 0.13 TCGA-F5-6814-01 14 31626499 31626499 G T HECTD1 Missense_Mutation p.L545I 0.16 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 14 31641111 31641111 A G HECTD1 Missense_Mutation p.S430P 0.18 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 14 32328499 32328499 C A NUBPL 3'UTR 0.41 TCGA-F5-6814-01 14 32560639 32560639 T G ARHGAP5 Missense_Mutation p.I255S 0.08 deleterious(0.05) possibly_damaging(0.589) TCGA-F5-6814-01 14 33015069 33015069 G T AKAP6 Missense_Mutation p.D404Y 0.36 tolerated(0.53) benign(0.332) TCGA-F5-6814-01 14 33015524 33015524 G A AKAP6 Silent p.E555E 0.14 TCGA-F5-6814-01 14 33046371 33046371 G A AKAP6 Missense_Mutation p.A798T 0.21 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 33046407 33046407 G A AKAP6 Missense_Mutation p.A810T 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 14 33290680 33290680 G T AKAP6 Nonsense_Mutation p.E1221* 0.34 TCGA-F5-6814-01 14 33291908 33291908 A G AKAP6 Missense_Mutation p.K1630R 0.32 tolerated(0.27) probably_damaging(0.993) TCGA-F5-6814-01 14 33291911 33291911 G T AKAP6 Missense_Mutation p.R1631I 0.54 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 14 33292180 33292180 C T AKAP6 Missense_Mutation p.R1721C 0.19 tolerated(0.11) probably_damaging(0.998) TCGA-F5-6814-01 14 33292375 33292375 T G AKAP6 Missense_Mutation p.Y1786D 0.21 tolerated(0.26) benign(0.011) TCGA-F5-6814-01 14 34029370 34029370 T G NPAS3 Missense_Mutation p.F171C 0.18 deleterious(0) probably_damaging(0.926) TCGA-F5-6814-01 14 34269021 34269021 C T NPAS3 Missense_Mutation p.S503L 0.50 tolerated(0.1) benign(0.184) TCGA-F5-6814-01 14 34398395 34398395 T C EGLN3 Missense_Mutation p.I167M 0.14 deleterious(0.05) possibly_damaging(0.834) TCGA-F5-6814-01 14 35222876 35222876 C T BAZ1A Silent p.S1503S 0.28 TCGA-F5-6814-01 14 35227974 35227974 A G BAZ1A Missense_Mutation p.L1441P 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 35252365 35252365 C G BAZ1A Missense_Mutation p.E691Q 0.34 tolerated(0.18) probably_damaging(0.932) TCGA-F5-6814-01 14 35483012 35483012 G A SRP54 Missense_Mutation p.A264T 0.19 deleterious(0.03) possibly_damaging(0.854) TCGA-F5-6814-01 14 35554711 35554711 G A PPP2R3C 3'UTR 0.40 TCGA-F5-6814-01 14 35560282 35560282 G T PPP2R3C Missense_Mutation p.F369L 0.43 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 14 35871130 35871130 A C NFKBIA 3'UTR 0.38 TCGA-F5-6814-01 14 35871192 35871192 G A NFKBIA 3'UTR 0.48 TCGA-F5-6814-01 14 36096333 36096333 G A RALGAPA1 Missense_Mutation p.L1768F 0.22 tolerated(0.07) possibly_damaging(0.904) TCGA-F5-6814-01 14 36777341 36777341 A G MBIP Missense_Mutation p.I282T 0.08 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 14 36942990 36942990 C A SFTA3 3'UTR 0.37 TCGA-F5-6814-01 14 36946253 36946253 G A SFTA3 Missense_Mutation p.P62S 0.32 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-F5-6814-01 14 38296443 38296443 C A TTC6 Missense_Mutation p.H1724N 0.43 tolerated(0.76) probably_damaging(0.999) TCGA-F5-6814-01 14 38681554 38681554 G A SSTR1 3'UTR 0.43 TCGA-F5-6814-01 14 39304974 39304974 G T LINC00639 RNA 0.31 TCGA-F5-6814-01 14 39565270 39565270 C T SEC23A Missense_Mutation p.R18Q 0.33 deleterious(0.02) probably_damaging(0.966) TCGA-F5-6814-01 14 39647097 39647097 G T PNN Nonsense_Mutation p.E159* 0.23 TCGA-F5-6814-01 14 39649730 39649730 G A PNN Missense_Mutation p.E273K 0.16 tolerated(0.06) benign(0.2) TCGA-F5-6814-01 14 39650898 39650898 G T PNN Missense_Mutation p.R662I 0.35 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 14 39716233 39716233 C A MIA2 Missense_Mutation p.S152Y 0.23 tolerated(0.94) benign(0.013) TCGA-F5-6814-01 14 39717152 39717152 A C MIA2 Missense_Mutation p.K458N 0.35 deleterious(0.03) benign(0.128) TCGA-F5-6814-01 14 39717370 39717370 G T MIA2 Intron 0.50 TCGA-F5-6814-01 14 39748660 39748660 G T CTAGE5 Missense_Mutation p.E75D 0.13 deleterious(0) probably_damaging(0.93) TCGA-F5-6814-01 14 42355810 42355810 C T LRFN5 Intron 0.31 TCGA-F5-6814-01 14 42355970 42355970 A C LRFN5 Missense_Mutation p.N48H 0.18 tolerated(0.17) probably_damaging(0.912) TCGA-F5-6814-01 14 42355983 42355983 G T LRFN5 Missense_Mutation p.R52I 0.35 deleterious(0) possibly_damaging(0.775) TCGA-F5-6814-01 14 42356793 42356793 C A LRFN5 Missense_Mutation p.S322Y 0.27 deleterious(0) probably_damaging(0.961) TCGA-F5-6814-01 14 44973639 44973639 G A FSCB 3'UTR 0.19 TCGA-F5-6814-01 14 44973798 44973798 G T FSCB Missense_Mutation p.S798Y 0.31 deleterious(0.02) unknown(0) TCGA-F5-6814-01 14 44975769 44975769 G A FSCB Missense_Mutation p.T141I 0.14 tolerated(0.08) benign(0.362) TCGA-F5-6814-01 14 45415035 45415035 C T KLHL28 Missense_Mutation p.E33K 0.13 tolerated(0.14) benign(0.36) TCGA-F5-6814-01 14 45523725 45523725 C A FAM179B Missense_Mutation p.S1458Y 0.40 tolerated(0.08) benign(0.029) TCGA-F5-6814-01 14 45581577 45581577 A C PRPF39 Missense_Mutation p.K543N 0.30 tolerated(0.38) benign(0.062) TCGA-F5-6814-01 14 45605585 45605585 G T FANCM Missense_Mutation p.K117N 0.30 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 45628373 45628373 G T FANCM Nonsense_Mutation p.E491* 0.34 TCGA-F5-6814-01 14 45644512 45644512 C A FANCM Missense_Mutation p.S852Y 0.35 tolerated(0.06) possibly_damaging(0.474) TCGA-F5-6814-01 14 45644846 45644846 C A FANCM Missense_Mutation p.F963L 0.12 tolerated(0.45) benign(0.004) TCGA-F5-6814-01 14 45645237 45645237 T G FANCM Missense_Mutation p.L1094V 0.36 tolerated(0.1) benign(0.315) TCGA-F5-6814-01 14 45693675 45693675 A C MIS18BP1 Silent p.G705G 0.12 TCGA-F5-6814-01 14 45712016 45712016 T G MIS18BP1 Missense_Mutation p.Q202H 0.23 deleterious(0.04) benign(0.002) TCGA-F5-6814-01 14 47343395 47343395 G T MDGA2 Missense_Mutation p.H816N 0.18 tolerated(0.29) possibly_damaging(0.461) TCGA-F5-6814-01 14 47504344 47504344 C A MDGA2 Missense_Mutation p.E563D 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-F5-6814-01 14 50074736 50074736 C A LRR1 Missense_Mutation p.L301I 0.33 deleterious(0.01) benign(0.242) TCGA-F5-6814-01 14 50117013 50117013 C T POLE2 Silent p.T489T 0.37 TCGA-F5-6814-01 14 50295812 50295812 C A NEMF Nonsense_Mutation p.E398* 0.36 TCGA-F5-6814-01 14 50612229 50612229 G A SOS2 Missense_Mutation p.R824C 0.41 deleterious(0) probably_damaging(0.96) TCGA-F5-6814-01 14 50641240 50641240 G A SOS2 Missense_Mutation p.R334C 0.24 deleterious(0) possibly_damaging(0.846) TCGA-F5-6814-01 14 50798991 50798991 C A CDKL1 Nonsense_Mutation p.E320* 0.40 TCGA-F5-6814-01 14 50915535 50915535 A C MAP4K5 Missense_Mutation p.F344C 0.10 deleterious(0.01) probably_damaging(0.917) TCGA-F5-6814-01 14 50952907 50952907 C A MAP4K5 Missense_Mutation p.D58Y 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 14 51026944 51026944 G A ATL1 5'UTR 0.25 TCGA-F5-6814-01 14 51190228 51190228 T G NIN 3'Flank 0.29 TCGA-F5-6814-01 14 51219403 51219403 C A NIN Nonsense_Mutation p.E1595* 0.22 TCGA-F5-6814-01 14 51221567 51221567 A G NIN Silent p.L1519L 0.41 TCGA-F5-6814-01 14 51223724 51223724 G A NIN Missense_Mutation p.R1342W 0.22 deleterious(0.03) possibly_damaging(0.471) TCGA-F5-6814-01 14 51290185 51290185 G A NIN Intron 0.44 TCGA-F5-6814-01 14 51372106 51372106 G A PYGL 3'UTR 0.10 TCGA-F5-6814-01 14 51372275 51372275 C A PYGL Splice_Site p.X794_splice 0.29 TCGA-F5-6814-01 14 51446160 51446160 A C TRIM9 Missense_Mutation p.F672C 0.42 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 14 52472538 52472538 C T NID2 Missense_Mutation p.S1345N 0.31 tolerated(0.22) benign(0.016) TCGA-F5-6814-01 14 52978093 52978093 T G TXNDC16 Missense_Mutation p.E207D 0.09 tolerated(0.37) benign(0.002) TCGA-F5-6814-01 14 53066993 53066993 C A GPR137C Silent p.I217I 0.49 TCGA-F5-6814-01 14 53194427 53194427 T G PSMC6 3'UTR 0.34 TCGA-F5-6814-01 14 53348187 53348187 C T FERMT2 Missense_Mutation p.G176E 0.36 tolerated(0.1) possibly_damaging(0.865) TCGA-F5-6814-01 14 53385887 53385887 G T FERMT2 Missense_Mutation p.F115L 0.38 deleterious(0) probably_damaging(0.96) TCGA-F5-6814-01 14 53522623 53522623 C A DDHD1 Missense_Mutation p.R667I 0.43 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 14 54878332 54878332 C T CDKN3 Silent p.I108I 0.29 TCGA-F5-6814-01 14 54948128 54948128 G A GMFB Missense_Mutation p.R67C 0.26 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 14 55169047 55169047 C T SAMD4A Missense_Mutation p.S155L 0.43 deleterious(0.02) benign(0.173) TCGA-F5-6814-01 14 55332143 55332143 C T GCH1 Missense_Mutation p.D119N 0.31 tolerated(0.37) benign(0.004) TCGA-F5-6814-01 14 55475382 55475382 G A WDHD1 Nonsense_Mutation p.R133* 0.34 TCGA-F5-6814-01 14 55512592 55512592 T G SOCS4 3'UTR 0.26 TCGA-F5-6814-01 14 55512692 55512692 T G SOCS4 3'UTR 0.18 TCGA-F5-6814-01 14 55529385 55529385 G A MAPK1IP1L Missense_Mutation p.S23N 0.34 tolerated_low_confidence(0.21) benign(0.197) TCGA-F5-6814-01 14 55621430 55621430 A G DLGAP5 Silent p.I656I 0.36 TCGA-F5-6814-01 14 55818390 55818390 C T FBXO34 Missense_Mutation p.P428S 0.10 tolerated(0.11) possibly_damaging(0.743) TCGA-F5-6814-01 14 56078962 56078962 G T KTN1 Nonsense_Mutation p.E66* 0.18 TCGA-F5-6814-01 14 57075980 57075980 G A TMEM260 Missense_Mutation p.E265K 0.29 tolerated(0.18) benign(0.008) TCGA-F5-6814-01 14 57268420 57268420 A C OTX2 3'UTR 0.16 TCGA-F5-6814-01 14 57696458 57696458 A G EXOC5 Silent p.C430C 0.42 TCGA-F5-6814-01 14 57741449 57741449 T C AP5M1 Missense_Mutation p.S188P 0.41 tolerated(0.37) benign(0.007) TCGA-F5-6814-01 14 57755559 57755559 C A AP5M1 Missense_Mutation p.S477Y 0.14 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 14 57866564 57866564 A C NAA30 Missense_Mutation p.K305T 0.38 deleterious(0) possibly_damaging(0.856) TCGA-F5-6814-01 14 57947429 57947429 A C C14orf105 Missense_Mutation p.I180S 0.10 deleterious(0.01) benign(0.037) TCGA-F5-6814-01 14 57957714 57957714 C A C14orf105 Missense_Mutation p.R100I 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 57957781 57957781 C A C14orf105 Missense_Mutation p.D78Y 0.33 deleterious(0.04) possibly_damaging(0.627) TCGA-F5-6814-01 14 57960315 57960315 T G C14orf105 Missense_Mutation p.E40A 0.35 deleterious(0.03) possibly_damaging(0.901) TCGA-F5-6814-01 14 58036540 58036540 C A SLC35F4 Missense_Mutation p.W400C 0.29 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 14 58471516 58471516 C A C14orf37 Nonsense_Mutation p.E755* 0.30 TCGA-F5-6814-01 14 58772788 58772788 G A ARID4A Missense_Mutation p.A78T 0.27 deleterious(0) possibly_damaging(0.873) TCGA-F5-6814-01 14 58831234 58831234 T G ARID4A Missense_Mutation p.I809M 0.21 tolerated_low_confidence(0.07) benign(0.003) TCGA-F5-6814-01 14 58831593 58831593 G T ARID4A Missense_Mutation p.R929I 0.21 tolerated_low_confidence(0.14) benign(0) TCGA-F5-6814-01 14 58958912 58958912 A C KIAA0586 Missense_Mutation p.K1356N 0.09 tolerated(0.08) benign(0.033) TCGA-F5-6814-01 14 59112525 59112525 C T DACT1 Missense_Mutation p.S395L 0.14 tolerated(0.1) benign(0.008) TCGA-F5-6814-01 14 59113603 59113603 C T DACT1 Silent p.F754F 0.48 TCGA-F5-6814-01 14 59114183 59114183 C A DACT1 3'Flank 0.38 TCGA-F5-6814-01 14 59730280 59730280 C T DAAM1 Missense_Mutation p.R29W 0.10 deleterious(0.05) unknown(0) TCGA-F5-6814-01 14 59757965 59757965 G T DAAM1 Nonsense_Mutation p.E72* 0.27 TCGA-F5-6814-01 14 59951345 59951345 T G JKAMP Intron 0.17 TCGA-F5-6814-01 14 60581584 60581584 T C PCNXL4 Missense_Mutation p.S52P 0.24 deleterious(0.01) benign(0.313) TCGA-F5-6814-01 14 60585143 60585143 C T PCNXL4 Nonsense_Mutation p.R325* 0.35 TCGA-F5-6814-01 14 60585161 60585161 T G PCNXL4 Missense_Mutation p.L331V 0.07 deleterious(0.04) possibly_damaging(0.77) TCGA-F5-6814-01 14 60591794 60591794 G T PCNXL4 Missense_Mutation p.D735Y 0.35 deleterious(0) possibly_damaging(0.853) TCGA-F5-6814-01 14 60749577 60749577 G A PPM1A Silent p.S125S 0.17 TCGA-F5-6814-01 14 60749889 60749889 A C PPM1A Missense_Mutation p.K229N 0.40 tolerated(0.15) benign(0.013) TCGA-F5-6814-01 14 60749942 60749942 G A PPM1A Missense_Mutation p.R247Q 0.41 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 14 60921791 60921791 A G C14orf39 Silent p.S477S 0.10 TCGA-F5-6814-01 14 60921799 60921799 G T C14orf39 Missense_Mutation p.L475I 0.40 deleterious(0.04) possibly_damaging(0.801) TCGA-F5-6814-01 14 60921858 60921858 C A C14orf39 Missense_Mutation p.R455I 0.42 tolerated(0.15) benign(0.006) TCGA-F5-6814-01 14 60938423 60938423 C A C14orf39 Nonsense_Mutation p.E120* 0.26 TCGA-F5-6814-01 14 60938444 60938444 C A C14orf39 Missense_Mutation p.D113Y 0.12 deleterious(0.01) probably_damaging(0.979) TCGA-F5-6814-01 14 60945082 60945082 G A C14orf39 Missense_Mutation p.R87C 0.37 deleterious(0.01) benign(0.185) TCGA-F5-6814-01 14 61186917 61186917 A G SIX4 Silent p.I370I 0.36 TCGA-F5-6814-01 14 61441758 61441758 T G TRMT5 3'UTR 0.24 TCGA-F5-6814-01 14 61789004 61789004 A C PRKCH Missense_Mutation p.K62T 0.20 deleterious(0) probably_damaging(0.911) TCGA-F5-6814-01 14 61917577 61917577 C T PRKCH Silent p.F240F 0.31 TCGA-F5-6814-01 14 61952335 61952335 C T PRKCH Missense_Mutation p.S465L 0.44 tolerated(0.48) possibly_damaging(0.908) TCGA-F5-6814-01 14 62213803 62213803 A C HIF1A Nonstop_Mutation p.*851Cext*4 0.18 TCGA-F5-6814-01 14 63269081 63269081 T C KCNH5 Silent p.E596E 0.14 TCGA-F5-6814-01 14 63316424 63316424 T C KCNH5 Missense_Mutation p.M506V 0.23 deleterious(0.04) possibly_damaging(0.549) TCGA-F5-6814-01 14 64152841 64152841 G T SGPP1 Missense_Mutation p.F436L 0.22 tolerated(0.69) benign(0.001) TCGA-F5-6814-01 14 64444652 64444652 G A SYNE2 Silent p.S441S 0.41 TCGA-F5-6814-01 14 64444699 64444699 T C SYNE2 Missense_Mutation p.L457S 0.18 benign(0.389) TCGA-F5-6814-01 14 64445610 64445610 G T SYNE2 Nonsense_Mutation p.E483* 0.15 TCGA-F5-6814-01 14 64445700 64445700 G T SYNE2 Nonsense_Mutation p.E513* 0.33 TCGA-F5-6814-01 14 64449411 64449411 T G SYNE2 Missense_Mutation p.F634V 0.07 possibly_damaging(0.558) TCGA-F5-6814-01 14 64519599 64519599 G A SYNE2 Missense_Mutation p.A2990T 0.19 benign(0.124) TCGA-F5-6814-01 14 64574248 64574248 G A SYNE2 Missense_Mutation p.A4178T 0.36 benign(0.032) TCGA-F5-6814-01 14 64630168 64630168 T G SYNE2 Missense_Mutation p.S5450A 0.08 benign(0.034) TCGA-F5-6814-01 14 64637085 64637085 C T SYNE2 Missense_Mutation p.R5714C 0.30 probably_damaging(0.96) TCGA-F5-6814-01 14 64716303 64716303 C A ESR2 Nonsense_Mutation p.E396* 0.38 TCGA-F5-6814-01 14 64941078 64941078 A T AKAP5 3'UTR 0.19 TCGA-F5-6814-01 14 64989451 64989451 A T ZBTB1 Missense_Mutation p.N410I 0.36 tolerated(0.18) benign(0.1) TCGA-F5-6814-01 14 65054872 65054872 C A PPP1R36 Missense_Mutation p.S314Y 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 65494253 65494253 A C FNTB Missense_Mutation p.T153P 0.15 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 14 66136014 66136014 C T FUT8 Silent p.G217G 0.09 TCGA-F5-6814-01 14 66188609 66188609 C T FUT8 Nonsense_Mutation p.R318* 0.11 TCGA-F5-6814-01 14 66208817 66208817 C T FUT8 Nonsense_Mutation p.R473* 0.29 TCGA-F5-6814-01 14 67243228 67243228 G A GPHN Missense_Mutation p.E64K 0.17 tolerated(0.08) benign(0.03) TCGA-F5-6814-01 14 67389425 67389425 G T GPHN Missense_Mutation p.D167Y 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 67849196 67849196 G T EIF2S1 Missense_Mutation p.M237I 0.17 tolerated(0.41) benign(0.046) TCGA-F5-6814-01 14 68159182 68159182 G A RDH11 Nonsense_Mutation p.R108* 0.35 TCGA-F5-6814-01 14 68191892 68191892 G T RDH12 Missense_Mutation p.K88N 0.27 tolerated(0.15) possibly_damaging(0.543) TCGA-F5-6814-01 14 68221958 68221958 G A ZFYVE26 Missense_Mutation p.R2266W 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 68257342 68257342 C A ZFYVE26 Missense_Mutation p.R901I 0.24 deleterious(0.01) possibly_damaging(0.663) TCGA-F5-6814-01 14 68265209 68265209 G A ZFYVE26 Silent p.H590H 0.13 TCGA-F5-6814-01 14 69351017 69351017 C T ACTN1 Silent p.E501E 0.34 TCGA-F5-6814-01 14 69378902 69378902 C T ACTN1 Missense_Mutation p.R133H 0.32 deleterious(0) possibly_damaging(0.777) TCGA-F5-6814-01 14 69702834 69702834 G T EXD2 Missense_Mutation p.R374I 0.32 deleterious(0) possibly_damaging(0.805) TCGA-F5-6814-01 14 69818749 69818749 A C GALNT16 Missense_Mutation p.K514T 0.18 deleterious(0.05) possibly_damaging(0.872) TCGA-F5-6814-01 14 69847284 69847284 G A ERH Missense_Mutation p.R96C 0.25 tolerated(0.06) benign(0.129) TCGA-F5-6814-01 14 69966903 69966903 A C PLEKHD1 Missense_Mutation p.K74T 0.24 deleterious(0.02) benign(0.272) TCGA-F5-6814-01 14 70177765 70177765 G A KIAA0247 3'UTR 0.20 TCGA-F5-6814-01 14 70235375 70235375 G T SRSF5 Nonsense_Mutation p.E61* 0.41 TCGA-F5-6814-01 14 70235601 70235601 G A SRSF5 Missense_Mutation p.R95Q 0.21 tolerated(0.39) benign(0.115) TCGA-F5-6814-01 14 70236013 70236013 A C SRSF5 Intron 0.20 TCGA-F5-6814-01 14 70252946 70252946 G T SLC10A1 Silent p.I145I 0.20 TCGA-F5-6814-01 14 70530557 70530557 T C SLC8A3 Intron 0.16 TCGA-F5-6814-01 14 70633943 70633943 G T SLC8A3 Missense_Mutation p.F399L 0.36 tolerated(0.18) benign(0.021) TCGA-F5-6814-01 14 70634531 70634531 G T SLC8A3 Missense_Mutation p.F203L 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 70924412 70924412 C T ADAM21 Missense_Mutation p.R66W 0.27 tolerated(0.05) benign(0.083) TCGA-F5-6814-01 14 70924882 70924882 T G ADAM21 Missense_Mutation p.I222M 0.39 tolerated(0.06) benign(0.199) TCGA-F5-6814-01 14 70925534 70925534 C T ADAM21 Silent p.L440L 0.11 TCGA-F5-6814-01 14 70926443 70926443 G T ADAM21 3'UTR 0.35 TCGA-F5-6814-01 14 70989862 70989862 C A ADAM20 Missense_Mutation p.G588V 0.13 deleterious(0) probably_damaging(0.975) TCGA-F5-6814-01 14 70990658 70990658 C A ADAM20 Missense_Mutation p.D323Y 0.21 tolerated(0.17) benign(0.021) TCGA-F5-6814-01 14 71057993 71057993 T G MED6 Missense_Mutation p.K191T 0.39 tolerated(0.21) benign(0.009) TCGA-F5-6814-01 14 71064410 71064410 C A MED6 Missense_Mutation p.R36I 0.33 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 14 72055399 72055399 G T SIPA1L1 Missense_Mutation p.E270D 0.38 tolerated(0.47) benign(0.004) TCGA-F5-6814-01 14 72985078 72985078 G T RGS6 Missense_Mutation p.D371Y 0.21 deleterious(0) probably_damaging(0.963) TCGA-F5-6814-01 14 73437561 73437561 T G ZFYVE1 3'UTR 0.23 TCGA-F5-6814-01 14 73554772 73554772 A G RBM25 Missense_Mutation p.D149G 0.09 possibly_damaging(0.678) TCGA-F5-6814-01 14 73673134 73673134 G A PSEN1 Silent p.P303P 0.39 TCGA-F5-6814-01 14 73945369 73945369 C A HEATR4 Missense_Mutation p.R1008I 0.50 deleterious_low_confidence(0.04) benign(0) TCGA-F5-6814-01 14 73978848 73978848 C A HEATR4 Nonsense_Mutation p.E474* 0.35 TCGA-F5-6814-01 14 74180000 74180000 T C PNMA1 Missense_Mutation p.T115A 0.42 tolerated(0.17) possibly_damaging(0.756) TCGA-F5-6814-01 14 74425057 74425057 G A ENTPD5 3'Flank 0.28 TCGA-F5-6814-01 14 74429797 74429797 A C ENTPD5 3'UTR 0.37 TCGA-F5-6814-01 14 74453583 74453583 A G ENTPD5 Silent p.I77I 0.28 TCGA-F5-6814-01 14 74512789 74512789 G T CCDC176 Missense_Mutation p.K201N 0.33 deleterious(0) probably_damaging(0.913) TCGA-F5-6814-01 14 74516731 74516731 G T CCDC176 Missense_Mutation p.Q373H 0.38 deleterious(0) possibly_damaging(0.847) TCGA-F5-6814-01 14 74531537 74531537 G T ALDH6A1 Missense_Mutation p.F497L 0.26 tolerated(0.12) probably_damaging(0.996) TCGA-F5-6814-01 14 74727541 74727541 G A VSX2 Silent p.E335E 0.46 TCGA-F5-6814-01 14 74825853 74825853 G A VRTN 3'UTR 0.37 TCGA-F5-6814-01 14 74825914 74825914 G A VRTN 3'UTR 0.15 TCGA-F5-6814-01 14 74826687 74826687 G T VRTN 3'UTR 0.33 TCGA-F5-6814-01 14 74995775 74995775 G A LTBP2 Missense_Mutation p.P680S 0.17 tolerated(0.83) benign(0.007) TCGA-F5-6814-01 14 75265172 75265172 C T YLPM1 Missense_Mutation p.R1058W 0.42 probably_damaging(0.941) TCGA-F5-6814-01 14 75276345 75276345 T G YLPM1 Missense_Mutation p.F1595C 0.15 probably_damaging(0.984) TCGA-F5-6814-01 14 75514363 75514363 A C MLH3 Missense_Mutation p.S666A 0.24 tolerated(0.5) benign(0.003) TCGA-F5-6814-01 14 75514786 75514786 G T MLH3 Missense_Mutation p.L525I 0.39 tolerated(0.21) benign(0.094) TCGA-F5-6814-01 14 75520127 75520127 G A ACYP1 3'UTR 0.15 TCGA-F5-6814-01 14 75553760 75553760 T C NEK9 Silent p.Q926Q 0.08 TCGA-F5-6814-01 14 76455243 76455243 C T IFT43 Missense_Mutation p.R24C 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 76525025 76525025 T C IFT43 Intron 0.12 TCGA-F5-6814-01 14 76928920 76928920 G A ESRRB Missense_Mutation p.E144K 0.24 deleterious(0.04) possibly_damaging(0.495) TCGA-F5-6814-01 14 76948406 76948406 C T ESRRB Missense_Mutation p.R188W 0.43 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 14 77294739 77294739 C T C14orf166B Missense_Mutation p.S65L 0.08 deleterious(0.03) possibly_damaging(0.862) TCGA-F5-6814-01 14 77302606 77302606 C T C14orf166B Silent p.G149G 0.37 TCGA-F5-6814-01 14 77600122 77600122 C A ZDHHC22 Missense_Mutation p.K232N 0.36 tolerated(0.28) benign(0.003) TCGA-F5-6814-01 14 77605890 77605890 A C ZDHHC22 Missense_Mutation p.N64K 0.35 deleterious(0) probably_damaging(0.972) TCGA-F5-6814-01 14 77751380 77751380 A G POMT2 Missense_Mutation p.W497R 0.19 deleterious(0) possibly_damaging(0.908) TCGA-F5-6814-01 14 77791258 77791258 C T GSTZ1 Nonsense_Mutation p.R21* 0.13 TCGA-F5-6814-01 14 77951047 77951047 G T ISM2 Silent p.T119T 0.13 TCGA-F5-6814-01 14 78045431 78045431 C A SPTLC2 Missense_Mutation p.D117Y 0.30 deleterious(0) possibly_damaging(0.513) TCGA-F5-6814-01 14 78374153 78374153 G A ADCK1 Missense_Mutation p.R250Q 0.40 tolerated(0.21) benign(0.003) TCGA-F5-6814-01 14 79454464 79454464 C A NRXN3 Missense_Mutation p.S708Y 0.29 deleterious(0.01) benign(0.023) TCGA-F5-6814-01 14 79746694 79746694 G A NRXN3 Intron 0.41 TCGA-F5-6814-01 14 80668998 80668998 T G DIO2 3'UTR 0.11 TCGA-F5-6814-01 14 80677635 80677635 G A DIO2 Missense_Mutation p.R61C 0.57 deleterious(0) probably_damaging(0.967) TCGA-F5-6814-01 14 80993262 80993262 G T CEP128 Missense_Mutation p.S1008Y 0.29 deleterious(0.02) possibly_damaging(0.59) TCGA-F5-6814-01 14 81558895 81558895 A T TSHR Missense_Mutation p.Y163F 0.12 tolerated(0.64) benign(0.004) TCGA-F5-6814-01 14 81574911 81574911 C A TSHR Intron 0.30 TCGA-F5-6814-01 14 86088230 86088230 T G FLRT2 Missense_Mutation p.I124M 0.41 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 14 86089067 86089067 G A FLRT2 Silent p.S403S 0.29 TCGA-F5-6814-01 14 86089139 86089139 C A FLRT2 Silent p.L427L 0.25 TCGA-F5-6814-01 14 86091371 86091371 C T FLRT2 3'UTR 0.39 TCGA-F5-6814-01 14 86092038 86092038 C A FLRT2 3'UTR 0.26 TCGA-F5-6814-01 14 86092305 86092305 G T FLRT2 3'UTR 0.27 TCGA-F5-6814-01 14 86092924 86092924 T C FLRT2 3'UTR 0.41 TCGA-F5-6814-01 14 88454857 88454857 C T GALC Missense_Mutation p.R69Q 0.10 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 14 88792776 88792776 G T KCNK10 5'Flank 0.28 TCGA-F5-6814-01 14 88792788 88792788 G T KCNK10 5'Flank 0.29 TCGA-F5-6814-01 14 88852146 88852146 C A SPATA7 5'UTR 0.50 TCGA-F5-6814-01 14 88892727 88892727 A C SPATA7 Missense_Mutation p.N175T 0.34 tolerated(0.24) benign(0.049) TCGA-F5-6814-01 14 88904771 88904771 C A SPATA7 3'UTR 0.19 TCGA-F5-6814-01 14 89034484 89034484 C T ZC3H14 Nonsense_Mutation p.R61* 0.37 TCGA-F5-6814-01 14 89077271 89077271 C T ZC3H14 Nonsense_Mutation p.R731* 0.19 TCGA-F5-6814-01 14 89206753 89206753 C T EML5 Missense_Mutation p.R230Q 0.38 deleterious(0.01) possibly_damaging(0.601) TCGA-F5-6814-01 14 89878675 89878675 C T FOXN3 Missense_Mutation p.R49Q 0.21 tolerated(0.28) benign(0.064) TCGA-F5-6814-01 14 90725506 90725506 T G PSMC1 Silent p.G2G 0.23 TCGA-F5-6814-01 14 90866427 90866427 G T CALM1 Nonsense_Mutation p.E8* 0.23 TCGA-F5-6814-01 14 90870229 90870229 G T CALM1 Nonsense_Mutation p.E68* 0.20 TCGA-F5-6814-01 14 91007860 91007860 G A TTC7B Missense_Mutation p.S795L 0.32 tolerated(0.07) benign(0.012) TCGA-F5-6814-01 14 91360888 91360888 C A RPS6KA5 Nonsense_Mutation p.E505* 0.30 TCGA-F5-6814-01 14 91626638 91626638 G A C14orf159 5'UTR 0.43 TCGA-F5-6814-01 14 91924939 91924939 C T SMEK1 3'UTR 0.27 TCGA-F5-6814-01 14 91925057 91925057 G T SMEK1 3'UTR 0.20 TCGA-F5-6814-01 14 92102804 92102804 G A CATSPERB Silent p.F569F 0.41 TCGA-F5-6814-01 14 92436010 92436010 G T TRIP11 3'UTR 0.20 TCGA-F5-6814-01 14 92469840 92469840 G A TRIP11 Nonsense_Mutation p.R1494* 0.33 TCGA-F5-6814-01 14 92915514 92915514 C A SLC24A4 Missense_Mutation p.F278L 0.22 tolerated(0.67) benign(0) TCGA-F5-6814-01 14 93393919 93393919 G T CHGA Missense_Mutation p.R71I 0.36 deleterious(0) possibly_damaging(0.858) TCGA-F5-6814-01 14 93397637 93397637 G T CHGA Missense_Mutation p.R133I 0.31 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 14 93650082 93650082 G A MOAP1 Missense_Mutation p.S169L 0.40 deleterious(0) possibly_damaging(0.754) TCGA-F5-6814-01 14 93653413 93653413 A C TMEM251 3'UTR 0.35 TCGA-F5-6814-01 14 93684879 93684879 A G UBR7 Missense_Mutation p.K203R 0.43 tolerated(0.38) benign(0.002) TCGA-F5-6814-01 14 94041412 94041412 G A UNC79 Silent p.S516S 0.34 TCGA-F5-6814-01 14 94046521 94046521 G T UNC79 Silent p.T643T 0.36 TCGA-F5-6814-01 14 94046621 94046621 A C UNC79 Missense_Mutation p.K677Q 0.38 tolerated(0.2) possibly_damaging(0.502) TCGA-F5-6814-01 14 94060167 94060167 G T UNC79 Missense_Mutation p.K881N 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 14 94088106 94088106 G A UNC79 Silent p.S1332S 0.34 TCGA-F5-6814-01 14 94088386 94088386 G T UNC79 Nonsense_Mutation p.E1426* 0.20 TCGA-F5-6814-01 14 94088953 94088953 G A UNC79 Missense_Mutation p.E1615K 0.27 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F5-6814-01 14 94120347 94120347 C T UNC79 Silent p.I1948I 0.30 TCGA-F5-6814-01 14 94423146 94423146 A G ASB2 Missense_Mutation p.Y93H 0.36 tolerated(0.16) benign(0.043) TCGA-F5-6814-01 14 94467658 94467658 G A LINC00521 RNA 0.45 TCGA-F5-6814-01 14 94528496 94528496 C T DDX24 Missense_Mutation p.R397Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 14 94935683 94935683 G A SERPINA9 Silent p.F183F 0.46 TCGA-F5-6814-01 14 94953820 94953820 C T SERPINA12 Silent p.K355K 0.41 TCGA-F5-6814-01 14 95085657 95085657 G A SERPINA3 Missense_Mutation p.E257K 0.42 tolerated(0.16) benign(0.297) TCGA-F5-6814-01 14 95235361 95235361 C T GSC Silent p.K183K 0.26 TCGA-F5-6814-01 14 95572534 95572534 C T DICER1 Missense_Mutation p.R944Q 0.39 tolerated(0.31) probably_damaging(0.993) TCGA-F5-6814-01 14 95577681 95577681 C T DICER1 Silent p.T743T 0.38 TCGA-F5-6814-01 14 95578563 95578563 G A DICER1 Nonsense_Mutation p.R688* 0.12 TCGA-F5-6814-01 14 95579442 95579442 C T DICER1 Missense_Mutation p.R676Q 0.12 deleterious(0.03) benign(0.021) TCGA-F5-6814-01 14 95592923 95592923 C T DICER1 Silent p.S299S 0.46 TCGA-F5-6814-01 14 95660198 95660198 C A CLMN Missense_Mutation p.R943L 0.25 tolerated(0.05) possibly_damaging(0.769) TCGA-F5-6814-01 14 95669981 95669981 C T CLMN Missense_Mutation p.D569N 0.39 deleterious_low_confidence(0.05) benign(0.039) TCGA-F5-6814-01 14 95677094 95677094 C T CLMN Missense_Mutation p.R244Q 0.24 deleterious(0.05) benign(0.393) TCGA-F5-6814-01 14 95903224 95903224 A C SYNE3 Missense_Mutation p.L824R 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 14 96707688 96707688 G T BDKRB2 Missense_Mutation p.K341N 0.31 deleterious(0.04) probably_damaging(0.972) TCGA-F5-6814-01 14 96730890 96730890 G T BDKRB1 Missense_Mutation p.D291Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 14 96795961 96795961 T C ATG2B Missense_Mutation p.T581A 0.38 tolerated(0.69) probably_damaging(0.952) TCGA-F5-6814-01 14 96798845 96798845 G A ATG2B Missense_Mutation p.A452V 0.44 tolerated(0.17) benign(0.045) TCGA-F5-6814-01 14 96875222 96875222 C T AK7 Silent p.L148L 0.28 TCGA-F5-6814-01 14 96922702 96922702 C A AK7 Missense_Mutation p.L373I 0.37 tolerated(0.05) possibly_damaging(0.85) TCGA-F5-6814-01 14 96924467 96924467 C T AK7 Silent p.V425V 0.39 TCGA-F5-6814-01 14 96991727 96991727 A C PAPOLA Missense_Mutation p.K110N 0.19 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 14 97319272 97319272 G T VRK1 Missense_Mutation p.R160I 0.18 deleterious(0.01) benign(0.159) TCGA-F5-6814-01 14 99924708 99924708 G A SETD3 Missense_Mutation p.R195W 0.33 deleterious(0.01) probably_damaging(0.936) TCGA-F5-6814-01 15 100943022 100943022 C T CERS3 Missense_Mutation p.E350K 0.72 tolerated(0.22) benign(0.012) TCGA-F5-6814-01 15 101013182 101013182 G A CERS3 Missense_Mutation p.R229C 0.72 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 101042036 101042036 C A CERS3 Nonsense_Mutation p.E7* 0.25 TCGA-F5-6814-01 15 101113797 101113797 A C LINS Intron 0.30 TCGA-F5-6814-01 15 101550769 101550769 C T LRRK1 Silent p.F368F 0.25 TCGA-F5-6814-01 15 101814873 101814873 T G VIMP Missense_Mutation p.K111T 0.08 deleterious(0) possibly_damaging(0.907) TCGA-F5-6814-01 15 20488896 20488896 G T CHEK2P2 RNA 0.16 TCGA-F5-6814-01 15 20662933 20662933 A G HERC2P3 RNA 0.07 TCGA-F5-6814-01 15 22332441 22332441 A G RP11-69H14.6 RNA 0.15 TCGA-F5-6814-01 15 22369134 22369134 A G OR4M2 Missense_Mutation p.I187V 0.08 deleterious(0) possibly_damaging(0.455) TCGA-F5-6814-01 15 22743053 22743053 C T GOLGA6L1 Nonsense_Mutation p.Q480* 0.16 TCGA-F5-6814-01 15 22841055 22841055 C T TUBGCP5 Silent p.F141F 0.43 TCGA-F5-6814-01 15 23198530 23198530 G T WHAMMP3 RNA 0.17 TCGA-F5-6814-01 15 23412211 23412211 C A RP11-467N20.5 Missense_Mutation p.K82N 0.18 probably_damaging(0.971) TCGA-F5-6814-01 15 23437934 23437934 A C GOLGA8EP RNA 0.13 TCGA-F5-6814-01 15 23931596 23931596 C T NDN Missense_Mutation p.E257K 0.16 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 15 23932279 23932279 G A NDN Missense_Mutation p.S29L 0.70 deleterious_low_confidence(0.01) benign(0) TCGA-F5-6814-01 15 24924827 24924827 T G NPAP1 3'UTR 0.33 TCGA-F5-6814-01 15 24925060 24925060 A C NPAP1 3'UTR 0.14 TCGA-F5-6814-01 15 24925830 24925830 G T NPAP1 3'UTR 0.19 TCGA-F5-6814-01 15 24926786 24926786 G T NPAP1 3'UTR 0.37 TCGA-F5-6814-01 15 24927083 24927083 G T NPAP1 3'UTR 0.15 TCGA-F5-6814-01 15 24927220 24927220 A C NPAP1 3'UTR 0.20 TCGA-F5-6814-01 15 25971144 25971144 G A ATP10A Silent p.L311L 0.21 TCGA-F5-6814-01 15 26793106 26793106 C T GABRB3 Missense_Mutation p.R419K 0.19 tolerated(0.14) benign(0.022) TCGA-F5-6814-01 15 27193185 27193185 G A GABRA5 Silent p.S398S 0.24 TCGA-F5-6814-01 15 27193302 27193302 C T GABRA5 Silent p.F437F 0.36 TCGA-F5-6814-01 15 27193422 27193422 G A GABRA5 3'UTR 0.38 TCGA-F5-6814-01 15 27222200 27222200 G T GABRG3 Missense_Mutation p.K35N 0.15 tolerated(0.16) benign(0.048) TCGA-F5-6814-01 15 27574029 27574029 T C GABRG3 Missense_Mutation p.S190P 0.18 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 15 27772697 27772697 C T GABRG3 Silent p.F328F 0.31 TCGA-F5-6814-01 15 27772764 27772764 A C GABRG3 Missense_Mutation p.K351Q 0.42 tolerated(0.32) benign(0.211) TCGA-F5-6814-01 15 28197012 28197012 G A OCA2 Silent p.L623L 0.20 TCGA-F5-6814-01 15 28358790 28358790 G A HERC2 Missense_Mutation p.R4650W 0.42 probably_damaging(0.997) TCGA-F5-6814-01 15 28499628 28499628 C A HERC2 Nonsense_Mutation p.E970* 0.47 TCGA-F5-6814-01 15 29393916 29393916 G A APBA2 Missense_Mutation p.E485K 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-F5-6814-01 15 29406213 29406213 C T APBA2 Silent p.V724V 0.18 TCGA-F5-6814-01 15 29997842 29997842 C T TJP1 Missense_Mutation p.G1653D 0.29 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 30024684 30024684 G A TJP1 Missense_Mutation p.A657V 0.38 deleterious(0.04) benign(0.408) TCGA-F5-6814-01 15 31196938 31196938 A C FAN1 Missense_Mutation p.K24N 0.10 tolerated(0.12) benign(0.004) TCGA-F5-6814-01 15 31212812 31212812 T G FAN1 Missense_Mutation p.L670V 0.21 deleterious(0.01) benign(0.073) TCGA-F5-6814-01 15 31214450 31214450 G T FAN1 Nonsense_Mutation p.E689* 0.13 TCGA-F5-6814-01 15 31220761 31220761 C A FAN1 Missense_Mutation p.H832N 0.23 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 15 31234044 31234044 T G MTMR10 Missense_Mutation p.K655Q 0.29 deleterious(0.05) benign(0.117) TCGA-F5-6814-01 15 31234231 31234231 C A MTMR10 Missense_Mutation p.K592N 0.41 deleterious(0) possibly_damaging(0.557) TCGA-F5-6814-01 15 31334414 31334414 C A TRPM1 Missense_Mutation p.K626N 0.22 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6814-01 15 31362287 31362287 C T TRPM1 Missense_Mutation p.D93N 0.47 deleterious(0.04) probably_damaging(0.926) TCGA-F5-6814-01 15 31776673 31776673 G A OTUD7A Silent p.L535L 0.45 TCGA-F5-6814-01 15 31776839 31776839 G A OTUD7A Missense_Mutation p.S480L 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-F5-6814-01 15 32460181 32460181 G A CHRNA7 Missense_Mutation p.R373Q 0.20 deleterious(0.04) probably_damaging(0.975) TCGA-F5-6814-01 15 32916621 32916621 C A ARHGAP11A Missense_Mutation p.S182Y 0.40 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 15 32920956 32920956 T G ARHGAP11A Missense_Mutation p.F297C 0.16 deleterious(0.02) possibly_damaging(0.682) TCGA-F5-6814-01 15 32972060 32972060 T G SCG5 Missense_Mutation p.F107C 0.12 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-F5-6814-01 15 32983929 32983929 G A SCG5 Missense_Mutation p.E170K 0.26 tolerated(0.33) benign(0.021) TCGA-F5-6814-01 15 32988817 32988817 G T SCG5 3'UTR 0.56 TCGA-F5-6814-01 15 33023850 33023850 G T GREM1 3'UTR 0.11 TCGA-F5-6814-01 15 33024209 33024209 C A GREM1 3'UTR 0.13 TCGA-F5-6814-01 15 33180403 33180403 C A FMN1 Missense_Mutation p.D1046Y 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 33359282 33359282 C A FMN1 Missense_Mutation p.E268D 0.40 tolerated(0.15) unknown(0) TCGA-F5-6814-01 15 33905432 33905432 C T RYR3 Missense_Mutation p.S738L 0.26 probably_damaging(0.99) TCGA-F5-6814-01 15 33954818 33954818 T G RYR3 Missense_Mutation p.L1696R 0.09 benign(0.304) TCGA-F5-6814-01 15 33954859 33954859 A G RYR3 Missense_Mutation p.I1710V 0.31 benign(0.007) TCGA-F5-6814-01 15 34018636 34018636 G A RYR3 Missense_Mutation p.R2321H 0.23 probably_damaging(0.997) TCGA-F5-6814-01 15 34032035 34032035 A G RYR3 Silent p.K2553K 0.22 TCGA-F5-6814-01 15 34047326 34047326 C A RYR3 Missense_Mutation p.F2820L 0.37 benign(0.147) TCGA-F5-6814-01 15 34131153 34131153 A C RYR3 Missense_Mutation p.K4324N 0.32 benign(0.012) TCGA-F5-6814-01 15 34134173 34134173 G T RYR3 Missense_Mutation p.E4382D 0.22 benign(0.007) TCGA-F5-6814-01 15 34356609 34356609 G T CHRM5 3'UTR 0.41 TCGA-F5-6814-01 15 34357200 34357200 G T CHRM5 3'UTR 0.11 TCGA-F5-6814-01 15 34388111 34388111 G A EMC7 Missense_Mutation p.S114L 0.12 deleterious(0.01) possibly_damaging(0.838) TCGA-F5-6814-01 15 34395392 34395392 G T PGBD4 Missense_Mutation p.Q220H 0.20 tolerated(0.7) benign(0.061) TCGA-F5-6814-01 15 34395696 34395696 C A PGBD4 Missense_Mutation p.L322I 0.27 tolerated(0.17) possibly_damaging(0.908) TCGA-F5-6814-01 15 34445217 34445217 C T KATNBL1 Missense_Mutation p.R71H 0.43 tolerated(0.61) benign(0) TCGA-F5-6814-01 15 34445218 34445218 G A KATNBL1 Missense_Mutation p.R71C 0.27 tolerated(0.57) benign(0) TCGA-F5-6814-01 15 34521955 34521955 G T EMC4 Missense_Mutation p.R173I 0.24 deleterious(0.03) possibly_damaging(0.733) TCGA-F5-6814-01 15 34530594 34530594 G A SLC12A6 Nonsense_Mutation p.R881* 0.65 TCGA-F5-6814-01 15 34531257 34531257 G A SLC12A6 Silent p.G847G 0.40 TCGA-F5-6814-01 15 34536266 34536266 G T SLC12A6 Missense_Mutation p.L651I 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 15 34543221 34543221 G T SLC12A6 Silent p.I457I 0.31 TCGA-F5-6814-01 15 34610903 34610903 C A SLC12A6 Intron 0.17 TCGA-F5-6814-01 15 34646865 34646865 A C NUTM1 Missense_Mutation p.M404L 0.15 tolerated(0.35) benign(0.004) TCGA-F5-6814-01 15 34819801 34819801 T A GOLGA8B 3'UTR 0.24 TCGA-F5-6814-01 15 35044959 35044959 T C GJD2 Missense_Mutation p.Y229C 0.44 deleterious(0) probably_damaging(0.956) TCGA-F5-6814-01 15 35045374 35045374 G T GJD2 Missense_Mutation p.L91I 0.36 tolerated(0.33) probably_damaging(0.999) TCGA-F5-6814-01 15 35045415 35045415 C T GJD2 Missense_Mutation p.R77H 0.25 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 15 35082704 35082704 A G ACTC1 Missense_Mutation p.L348P 0.18 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-F5-6814-01 15 35084436 35084436 G A ACTC1 Silent p.V221V 0.09 TCGA-F5-6814-01 15 35176867 35176867 C A AQR Silent p.T962T 0.32 TCGA-F5-6814-01 15 37184226 37184226 G T MEIS2 3'UTR 0.50 TCGA-F5-6814-01 15 37184423 37184423 G T MEIS2 Missense_Mutation p.S462Y 0.35 deleterious_low_confidence(0) benign(0.126) TCGA-F5-6814-01 15 38229121 38229121 A G TMCO5A Missense_Mutation p.M72V 0.16 tolerated(0.5) benign(0.002) TCGA-F5-6814-01 15 38776909 38776909 G T FAM98B 3'UTR 0.47 TCGA-F5-6814-01 15 38808414 38808414 G T RASGRP1 Missense_Mutation p.S220Y 0.39 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 15 38808510 38808510 T C RASGRP1 Missense_Mutation p.K188R 0.22 tolerated(0.18) benign(0.266) TCGA-F5-6814-01 15 38990354 38990354 C T C15orf53 Missense_Mutation p.L50F 0.32 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-F5-6814-01 15 40057885 40057885 G T FSIP1 Missense_Mutation p.L125I 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 40462839 40462839 G A BUB1B Missense_Mutation p.R114Q 0.35 deleterious(0.04) benign(0.255) TCGA-F5-6814-01 15 40590856 40590856 C T PLCB2 Missense_Mutation p.V302M 0.27 deleterious(0) benign(0.269) TCGA-F5-6814-01 15 40591035 40591035 C T PLCB2 Missense_Mutation p.D272N 0.32 tolerated(0.06) possibly_damaging(0.57) TCGA-F5-6814-01 15 40675064 40675064 G A KNSTRN Missense_Mutation p.D10N 0.35 tolerated_low_confidence(0.19) benign(0.001) TCGA-F5-6814-01 15 40675068 40675068 G A KNSTRN Missense_Mutation p.R11K 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-F5-6814-01 15 40681751 40681751 A G KNSTRN Missense_Mutation p.D177G 0.19 deleterious(0.01) benign(0.019) TCGA-F5-6814-01 15 40684200 40684200 C T KNSTRN Silent p.A266A 0.27 TCGA-F5-6814-01 15 41643227 41643227 C A NUSAP1 Missense_Mutation p.F116L 0.44 tolerated(0.7) benign(0.012) TCGA-F5-6814-01 15 41820087 41820087 G A RPAP1 Missense_Mutation p.R467W 0.58 deleterious(0.03) possibly_damaging(0.8) TCGA-F5-6814-01 15 41828389 41828389 T C RPAP1 Missense_Mutation p.N120D 0.20 tolerated(0.1) benign(0.021) TCGA-F5-6814-01 15 41865940 41865940 G A TYRO3 Missense_Mutation p.E737K 0.27 deleterious(0) benign(0.179) TCGA-F5-6814-01 15 41983866 41983866 T G MGA Intron 0.37 TCGA-F5-6814-01 15 42003509 42003509 C T MGA Nonsense_Mutation p.R1016* 0.26 TCGA-F5-6814-01 15 42041441 42041441 T C MGA Missense_Mutation p.V1879A 0.09 tolerated(0.18) benign(0.41) TCGA-F5-6814-01 15 42058229 42058229 G A MGA Missense_Mutation p.R2650Q 0.30 tolerated(0.05) probably_damaging(0.941) TCGA-F5-6814-01 15 42145542 42145542 C A SPTBN5 Nonsense_Mutation p.E3362* 0.35 TCGA-F5-6814-01 15 42146987 42146987 C T SPTBN5 Missense_Mutation p.R3204H 0.43 benign(0.287) TCGA-F5-6814-01 15 42363740 42363740 C T PLA2G4D Missense_Mutation p.S528N 0.33 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 15 42523425 42523425 G A TMEM87A Missense_Mutation p.P366S 0.31 tolerated(0.42) benign(0.039) TCGA-F5-6814-01 15 42632088 42632088 G A GANC Missense_Mutation p.V689M 0.29 benign(0.104) TCGA-F5-6814-01 15 42652163 42652163 A C CAPN3 Missense_Mutation p.I54L 0.16 tolerated(0.25) benign(0.016) TCGA-F5-6814-01 15 42652284 42652284 C T CAPN3 Missense_Mutation p.P94L 0.34 deleterious(0) benign(0.31) TCGA-F5-6814-01 15 42691844 42691844 T C CAPN3 Missense_Mutation p.F450L 0.09 deleterious(0) possibly_damaging(0.588) TCGA-F5-6814-01 15 42701545 42701545 A C CAPN3 Missense_Mutation p.Q653H 0.09 tolerated(0.12) benign(0.007) TCGA-F5-6814-01 15 42714716 42714716 G A ZNF106 Missense_Mutation p.R1763C 0.37 deleterious(0) probably_damaging(0.944) TCGA-F5-6814-01 15 42717043 42717043 G T ZNF106 Missense_Mutation p.L1704I 0.35 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 42731572 42731572 A G ZNF106 Silent p.T1378T 0.34 TCGA-F5-6814-01 15 42742585 42742585 T C ZNF106 Missense_Mutation p.T606A 0.13 tolerated(0.35) benign(0.001) TCGA-F5-6814-01 15 42742734 42742734 G A ZNF106 Missense_Mutation p.S556F 0.08 tolerated(0.07) benign(0.006) TCGA-F5-6814-01 15 43237390 43237390 T G UBR1 3'UTR 0.20 TCGA-F5-6814-01 15 43318806 43318806 C A UBR1 Missense_Mutation p.D830Y 0.11 deleterious(0.02) benign(0.002) TCGA-F5-6814-01 15 43367232 43367232 T G UBR1 Missense_Mutation p.K158T 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6814-01 15 43489428 43489428 C A EPB42 3'UTR 0.17 TCGA-F5-6814-01 15 43525804 43525804 A C TGM5 Missense_Mutation p.C653G 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 15 43533101 43533101 T C TGM5 Missense_Mutation p.Y317C 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 43552300 43552300 G A TGM5 Missense_Mutation p.T129M 0.14 tolerated(0.22) benign(0.032) TCGA-F5-6814-01 15 43749309 43749309 C A TP53BP1 Missense_Mutation p.E499D 0.18 tolerated(0.33) benign(0.031) TCGA-F5-6814-01 15 43814521 43814521 C T MAP1A Missense_Mutation p.R284W 0.14 probably_damaging(0.997) TCGA-F5-6814-01 15 43815427 43815427 G T MAP1A Nonsense_Mutation p.E586* 0.42 TCGA-F5-6814-01 15 43817053 43817053 G T MAP1A Nonsense_Mutation p.E1128* 0.36 TCGA-F5-6814-01 15 43939299 43939299 A C CATSPER2 Missense_Mutation p.F113V 0.14 deleterious(0.02) benign(0.088) TCGA-F5-6814-01 15 43939656 43939656 C T CATSPER2 Missense_Mutation p.R52H 0.23 tolerated(0.56) benign(0.002) TCGA-F5-6814-01 15 43991309 43991309 C T CKMT1A 3'UTR 0.41 TCGA-F5-6814-01 15 44065298 44065298 A C ELL3 3'UTR 0.15 TCGA-F5-6814-01 15 44097423 44097423 G C MFAP1 Missense_Mutation p.Q397E 0.13 tolerated(0.16) possibly_damaging(0.678) TCGA-F5-6814-01 15 44120321 44120321 G T WDR76 Missense_Mutation p.K73N 0.37 tolerated(0.2) benign(0.015) TCGA-F5-6814-01 15 44120539 44120539 G A WDR76 Missense_Mutation p.S146N 0.34 deleterious(0.02) benign(0.325) TCGA-F5-6814-01 15 44855239 44855239 G T SPG11 3'UTR 0.43 TCGA-F5-6814-01 15 44892781 44892781 T G SPG11 Missense_Mutation p.K1190N 0.29 tolerated(0.08) benign(0.001) TCGA-F5-6814-01 15 44913990 44913990 C A SPG11 Nonsense_Mutation p.E863* 0.40 TCGA-F5-6814-01 15 44920982 44920982 C T SPG11 Missense_Mutation p.R651Q 0.34 deleterious(0) probably_damaging(0.947) TCGA-F5-6814-01 15 45047235 45047235 C A TRIM69 Missense_Mutation p.F48L 0.24 deleterious(0.01) probably_damaging(0.919) TCGA-F5-6814-01 15 45059668 45059668 C T TRIM69 Missense_Mutation p.R401W 0.36 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 45250570 45250570 G T C15orf43 Splice_Site p.X49_splice 0.32 TCGA-F5-6814-01 15 45440582 45440582 G A DUOX1 Missense_Mutation p.D919N 0.14 deleterious(0.05) benign(0.32) TCGA-F5-6814-01 15 45560446 45560446 C T SLC28A2 Missense_Mutation p.A413V 0.41 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 15 45697556 45697556 A C SPATA5L1 Missense_Mutation p.E376D 0.44 tolerated(0.24) benign(0.005) TCGA-F5-6814-01 15 45814254 45814254 T G SLC30A4 Missense_Mutation p.K100T 0.34 tolerated(0.1) benign(0.024) TCGA-F5-6814-01 15 48053385 48053385 C T SEMA6D Nonsense_Mutation p.R105* 0.24 TCGA-F5-6814-01 15 48053555 48053555 T G SEMA6D Missense_Mutation p.F125C 0.12 deleterious(0) probably_damaging(0.976) TCGA-F5-6814-01 15 48058843 48058843 C T SEMA6D Silent p.F559F 0.09 TCGA-F5-6814-01 15 48062748 48062748 T C SEMA6D Missense_Mutation p.V663A 0.09 deleterious(0) benign(0.269) TCGA-F5-6814-01 15 48063886 48063886 A G SEMA6D Silent p.L1042L 0.43 TCGA-F5-6814-01 15 48428956 48428956 T C SLC24A5 Missense_Mutation p.Y223H 0.10 tolerated(0.12) benign(0.01) TCGA-F5-6814-01 15 48429077 48429077 G T SLC24A5 Missense_Mutation p.R263I 0.37 deleterious(0.01) benign(0.053) TCGA-F5-6814-01 15 48429086 48429086 G A SLC24A5 Missense_Mutation p.S266N 0.31 tolerated(0.15) benign(0.032) TCGA-F5-6814-01 15 48451056 48451056 G A MYEF2 Missense_Mutation p.R261W 0.34 deleterious(0.02) possibly_damaging(0.896) TCGA-F5-6814-01 15 48493874 48493874 C A CTXN2 3'UTR 0.33 TCGA-F5-6814-01 15 48494334 48494334 C A CTXN2 3'UTR 0.27 TCGA-F5-6814-01 15 48495393 48495393 A G CTXN2 3'UTR 0.34 TCGA-F5-6814-01 15 48633519 48633519 T C DUT Missense_Mutation p.V197A 0.38 deleterious(0.02) probably_damaging(0.911) TCGA-F5-6814-01 15 48633623 48633623 T G DUT Intron 0.51 TCGA-F5-6814-01 15 48703339 48703339 G A FBN1 Missense_Mutation p.P2822S 0.15 benign(0.006) TCGA-F5-6814-01 15 48722988 48722988 A G FBN1 Missense_Mutation p.C2251R 0.32 probably_damaging(0.999) TCGA-F5-6814-01 15 48741037 48741037 C A FBN1 Missense_Mutation p.D1867Y 0.39 probably_damaging(0.989) TCGA-F5-6814-01 15 48777680 48777680 G A FBN1 Silent p.C1201C 0.26 TCGA-F5-6814-01 15 48936816 48936816 C T FBN1 Missense_Mutation p.D51N 0.33 probably_damaging(0.978) TCGA-F5-6814-01 15 49030992 49030992 T C CEP152 Silent p.E1529E 0.19 TCGA-F5-6814-01 15 49037137 49037137 C A CEP152 Missense_Mutation p.K1229N 0.39 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 49048601 49048601 G T CEP152 Silent p.V948V 0.30 TCGA-F5-6814-01 15 49126989 49126989 G T SHC4 Missense_Mutation p.L572I 0.45 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 49170783 49170783 G T EID1 Missense_Mutation p.R137I 0.10 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 15 49170868 49170868 T A EID1 Silent p.L165L 0.25 TCGA-F5-6814-01 15 49170902 49170902 G T EID1 Nonsense_Mutation p.E177* 0.16 TCGA-F5-6814-01 15 49288782 49288782 C T SECISBP2L Missense_Mutation p.S802N 0.44 tolerated(0.53) benign(0.007) TCGA-F5-6814-01 15 49293168 49293168 G A SECISBP2L Silent p.L718L 0.38 TCGA-F5-6814-01 15 49426611 49426611 A C COPS2 Missense_Mutation p.L221R 0.34 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 15 49620934 49620934 T G GALK2 3'Flank 0.48 TCGA-F5-6814-01 15 49880240 49880240 C A FAM227B Missense_Mutation p.K126N 0.31 tolerated(0.06) benign(0.29) TCGA-F5-6814-01 15 50211144 50211144 G A ATP8B4 Silent p.L643L 0.24 TCGA-F5-6814-01 15 50535044 50535044 G A HDC Nonsense_Mutation p.R468* 0.19 TCGA-F5-6814-01 15 50866593 50866593 T A TRPM7 Missense_Mutation p.K1729I 0.15 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 15 50885829 50885829 C T TRPM7 Missense_Mutation p.R1198H 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-F5-6814-01 15 50899450 50899450 C A TRPM7 Nonsense_Mutation p.E886* 0.37 TCGA-F5-6814-01 15 50902041 50902041 C T TRPM7 Missense_Mutation p.E800K 0.25 tolerated(0.22) possibly_damaging(0.614) TCGA-F5-6814-01 15 51201108 51201108 G A AP4E1 Missense_Mutation p.A45T 0.40 deleterious(0.02) benign(0.11) TCGA-F5-6814-01 15 51223004 51223004 G T AP4E1 Missense_Mutation p.E235D 0.20 tolerated(0.2) benign(0.077) TCGA-F5-6814-01 15 51350455 51350455 C A TNFAIP8L3 Missense_Mutation p.D168Y 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 15 51504527 51504527 A C CYP19A1 Missense_Mutation p.F418C 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 51772220 51772220 A C DMXL2 Missense_Mutation p.N2227K 0.35 tolerated(0.64) possibly_damaging(0.557) TCGA-F5-6814-01 15 51773769 51773769 C A DMXL2 Missense_Mutation p.R1845L 0.39 deleterious(0) possibly_damaging(0.716) TCGA-F5-6814-01 15 51790953 51790953 C A DMXL2 Nonsense_Mutation p.E1490* 0.13 TCGA-F5-6814-01 15 51795224 51795224 G A DMXL2 Missense_Mutation p.A924V 0.22 tolerated(0.19) benign(0.002) TCGA-F5-6814-01 15 51828428 51828428 G T DMXL2 Missense_Mutation p.S750Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 51829730 51829730 C A DMXL2 Silent p.V524V 0.40 TCGA-F5-6814-01 15 51839523 51839523 C A DMXL2 Missense_Mutation p.R217M 0.46 deleterious(0.02) benign(0.357) TCGA-F5-6814-01 15 51860688 51860688 T G DMXL2 Missense_Mutation p.N94T 0.33 tolerated(0.19) possibly_damaging(0.637) TCGA-F5-6814-01 15 51980596 51980596 C T SCG3 Silent p.G179G 0.08 TCGA-F5-6814-01 15 51981478 51981478 C T SCG3 Silent p.I201I 0.39 TCGA-F5-6814-01 15 52017057 52017057 A C LYSMD2 Missense_Mutation p.F179V 0.10 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 15 52201111 52201111 A C TMOD3 3'UTR 0.56 TCGA-F5-6814-01 15 52230238 52230238 T G LEO1 3'UTR 0.53 TCGA-F5-6814-01 15 52252142 52252142 C T LEO1 Missense_Mutation p.D372N 0.08 deleterious(0.03) benign(0.271) TCGA-F5-6814-01 15 52258194 52258194 T C LEO1 Missense_Mutation p.D189G 0.10 deleterious_low_confidence(0.01) benign(0.122) TCGA-F5-6814-01 15 52258531 52258531 T C LEO1 Missense_Mutation p.S77G 0.10 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-F5-6814-01 15 52356611 52356611 T C MAPK6 Missense_Mutation p.F527S 0.32 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F5-6814-01 15 52420415 52420415 G A GNB5 Missense_Mutation p.A297V 0.29 tolerated(0.06) possibly_damaging(0.799) TCGA-F5-6814-01 15 52515789 52515789 G T MYO5C Silent p.I1193I 0.08 TCGA-F5-6814-01 15 52529725 52529725 C T MYO5C Missense_Mutation p.R941Q 0.38 tolerated(0.22) benign(0) TCGA-F5-6814-01 15 52622662 52622662 G T MYO5A Silent p.I1456I 0.36 TCGA-F5-6814-01 15 52902581 52902581 C A FAM214A Splice_Site p.X177_splice 0.20 TCGA-F5-6814-01 15 53905952 53905952 G T WDR72 Missense_Mutation p.S928Y 0.24 deleterious(0.04) benign(0.211) TCGA-F5-6814-01 15 53907905 53907905 G T WDR72 Missense_Mutation p.S833Y 0.14 deleterious(0.01) benign(0.003) TCGA-F5-6814-01 15 53957896 53957896 A C WDR72 Missense_Mutation p.L612R 0.13 deleterious(0.02) benign(0.275) TCGA-F5-6814-01 15 53994402 53994402 C A WDR72 Nonsense_Mutation p.E500* 0.19 TCGA-F5-6814-01 15 54305645 54305645 G A UNC13C Missense_Mutation p.R182Q 0.33 deleterious_low_confidence(0) benign(0.44) TCGA-F5-6814-01 15 54306855 54306855 G A UNC13C Silent p.E585E 0.28 TCGA-F5-6814-01 15 54307506 54307506 G T UNC13C Missense_Mutation p.Q802H 0.37 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-F5-6814-01 15 54307996 54307996 A C UNC13C Missense_Mutation p.K966Q 0.31 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-F5-6814-01 15 54557627 54557627 A C UNC13C Missense_Mutation p.K1251Q 0.37 deleterious_low_confidence(0.01) benign(0.132) TCGA-F5-6814-01 15 54590098 54590098 C A UNC13C Missense_Mutation p.H1360N 0.11 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-F5-6814-01 15 54838927 54838927 C A UNC13C Missense_Mutation p.L1902I 0.30 tolerated_low_confidence(0.07) benign(0.301) TCGA-F5-6814-01 15 54919261 54919261 G T UNC13C Nonsense_Mutation p.E2199* 0.10 TCGA-F5-6814-01 15 55647470 55647470 T G CCPG1 3'UTR 0.16 TCGA-F5-6814-01 15 55651570 55651570 A C CCPG1 Intron 0.50 TCGA-F5-6814-01 15 55652302 55652302 C A CCPG1 Nonsense_Mutation p.E557* 0.08 TCGA-F5-6814-01 15 55652480 55652480 C A CCPG1 Missense_Mutation p.K497N 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 55759190 55759190 C A DYX1C1 Missense_Mutation p.R192I 0.23 tolerated(0.11) benign(0.002) TCGA-F5-6814-01 15 55921025 55921025 G A PRTG Missense_Mutation p.A934V 0.27 tolerated(0.12) benign(0.044) TCGA-F5-6814-01 15 55972695 55972695 G A PRTG Missense_Mutation p.R270C 0.43 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 15 55974600 55974600 C T PRTG Missense_Mutation p.R213Q 0.31 tolerated(0.32) possibly_damaging(0.804) TCGA-F5-6814-01 15 56386068 56386068 A C RFX7 Missense_Mutation p.I1286M 0.18 deleterious_low_confidence(0.05) possibly_damaging(0.724) TCGA-F5-6814-01 15 56686975 56686975 C T TEX9 Silent p.F257F 0.25 TCGA-F5-6814-01 15 56739117 56739117 C A MNS1 Missense_Mutation p.K126N 0.24 tolerated(0.14) possibly_damaging(0.719) TCGA-F5-6814-01 15 56923530 56923530 G T ZNF280D 3'UTR 0.44 TCGA-F5-6814-01 15 56924314 56924314 T G ZNF280D Missense_Mutation p.Q774H 0.20 tolerated(0.11) benign(0.007) TCGA-F5-6814-01 15 57458601 57458601 A G TCF12 Silent p.G109G 0.32 TCGA-F5-6814-01 15 57565319 57565319 C T TCF12 Missense_Mutation p.R613C 0.08 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 58287308 58287308 C A ALDH1A2 Nonsense_Mutation p.E175* 0.34 TCGA-F5-6814-01 15 58287313 58287313 C A ALDH1A2 Missense_Mutation p.R173I 0.36 deleterious(0) possibly_damaging(0.861) TCGA-F5-6814-01 15 58287332 58287332 C A ALDH1A2 Missense_Mutation p.D167Y 0.32 deleterious(0) possibly_damaging(0.877) TCGA-F5-6814-01 15 58430854 58430854 C A AQP9 Missense_Mutation p.F30L 0.37 tolerated(0.36) benign(0.042) TCGA-F5-6814-01 15 58471407 58471407 G A AQP9 Silent p.E192E 0.35 TCGA-F5-6814-01 15 59497652 59497652 C T MYO1E Silent p.R521R 0.38 TCGA-F5-6814-01 15 59510236 59510236 C A MYO1E Nonsense_Mutation p.E321* 0.43 TCGA-F5-6814-01 15 59752263 59752263 C T FAM81A Missense_Mutation p.A51V 0.39 deleterious(0) possibly_damaging(0.781) TCGA-F5-6814-01 15 60639823 60639823 C T ANXA2 3'UTR 0.20 TCGA-F5-6814-01 15 60745914 60745914 C A NARG2 Missense_Mutation p.R338I 0.16 deleterious(0) probably_damaging(0.983) TCGA-F5-6814-01 15 62146610 62146610 A G VPS13C 3'UTR 0.54 TCGA-F5-6814-01 15 62261507 62261507 C A VPS13C Nonsense_Mutation p.E968* 0.40 TCGA-F5-6814-01 15 62273582 62273582 C A VPS13C Nonsense_Mutation p.E709* 0.48 TCGA-F5-6814-01 15 62362869 62362869 C A C2CD4A 3'UTR 0.35 TCGA-F5-6814-01 15 63363458 63363458 C T TPM1 3'UTR 0.33 TCGA-F5-6814-01 15 63419713 63419713 G T LACTB Missense_Mutation p.K259N 0.08 deleterious(0.05) benign(0.025) TCGA-F5-6814-01 15 63419807 63419807 G A LACTB Missense_Mutation p.E291K 0.28 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 15 63446232 63446232 T C RPS27L Silent p.%3D 0.27 TCGA-F5-6814-01 15 63551852 63551852 C A RAB8B Missense_Mutation p.F147L 0.33 deleterious(0.01) possibly_damaging(0.52) TCGA-F5-6814-01 15 63845986 63845986 G T USP3 Missense_Mutation p.Q119H 0.16 deleterious(0.01) possibly_damaging(0.728) TCGA-F5-6814-01 15 63930955 63930955 G A HERC1 Silent p.N3974N 0.39 TCGA-F5-6814-01 15 63966998 63966998 G A HERC1 Silent p.I2463I 0.11 TCGA-F5-6814-01 15 63970246 63970246 C T HERC1 Missense_Mutation p.D2290N 0.31 benign(0.013) TCGA-F5-6814-01 15 63981793 63981793 G T HERC1 Missense_Mutation p.L2015I 0.18 possibly_damaging(0.575) TCGA-F5-6814-01 15 63981808 63981808 C A HERC1 Nonsense_Mutation p.E2010* 0.08 TCGA-F5-6814-01 15 64008617 64008617 C T HERC1 Missense_Mutation p.R1345Q 0.25 benign(0.09) TCGA-F5-6814-01 15 64021494 64021494 C T HERC1 Missense_Mutation p.R1032H 0.23 benign(0.265) TCGA-F5-6814-01 15 64025129 64025129 A C HERC1 Missense_Mutation p.F954L 0.32 benign(0.205) TCGA-F5-6814-01 15 64429836 64429836 G A SNX1 Intron 0.25 TCGA-F5-6814-01 15 64446175 64446175 A G SNX22 Missense_Mutation p.D145G 0.11 deleterious(0) probably_damaging(0.956) TCGA-F5-6814-01 15 64496768 64496768 G A CSNK1G1 Nonsense_Mutation p.R291* 0.35 TCGA-F5-6814-01 15 64506327 64506327 A G CTD-2116N17.1 Silent p.F129F 0.35 TCGA-F5-6814-01 15 64737223 64737223 G T TRIP4 Nonsense_Mutation p.E532* 0.36 TCGA-F5-6814-01 15 64967612 64967612 G A ZNF609 Silent p.E853E 0.22 TCGA-F5-6814-01 15 64972856 64972856 A C ZNF609 Missense_Mutation p.K1319N 0.35 deleterious(0.02) probably_damaging(0.975) TCGA-F5-6814-01 15 65108891 65108891 G T PIF1 Missense_Mutation p.S583Y 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 65667723 65667723 C T IGDCC3 Missense_Mutation p.E41K 0.48 deleterious(0) probably_damaging(0.96) TCGA-F5-6814-01 15 65689230 65689230 G A IGDCC4 Silent p.R313R 0.36 TCGA-F5-6814-01 15 65773954 65773954 C A DPP8 Splice_Site p.X356_splice 0.18 TCGA-F5-6814-01 15 65891285 65891285 T C VWA9 Missense_Mutation p.D120G 0.14 deleterious(0.02) benign(0.116) TCGA-F5-6814-01 15 65916799 65916799 G T SLC24A1 Missense_Mutation p.K127N 0.28 benign(0.053) TCGA-F5-6814-01 15 66048662 66048662 C A DENND4A Nonsense_Mutation p.E43* 0.09 TCGA-F5-6814-01 15 66048705 66048705 T G DENND4A Missense_Mutation p.E28D 0.26 tolerated(0.56) benign(0.071) TCGA-F5-6814-01 15 66210355 66210355 C T MEGF11 Missense_Mutation p.D679N 0.24 deleterious(0.02) possibly_damaging(0.875) TCGA-F5-6814-01 15 66641448 66641448 C A TIPIN Missense_Mutation p.R142L 0.29 deleterious(0) possibly_damaging(0.832) TCGA-F5-6814-01 15 66793826 66793826 C T RPL4 Missense_Mutation p.R188Q 0.13 tolerated(0.13) benign(0.164) TCGA-F5-6814-01 15 66844086 66844086 C T LCTL Missense_Mutation p.D480N 0.24 tolerated(0.61) benign(0.001) TCGA-F5-6814-01 15 67636436 67636436 C T IQCH Missense_Mutation p.P182S 0.25 tolerated(0.06) possibly_damaging(0.799) TCGA-F5-6814-01 15 67835713 67835713 A C MAP2K5 Missense_Mutation p.N14H 0.35 deleterious_low_confidence(0.02) benign(0) TCGA-F5-6814-01 15 68099065 68099065 C T MAP2K5 Missense_Mutation p.R442W 0.30 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 15 68118703 68118703 C T SKOR1 Silent p.F365F 0.38 TCGA-F5-6814-01 15 68473596 68473596 A C PIAS1 Missense_Mutation p.S510R 0.16 tolerated(0.25) probably_damaging(0.986) TCGA-F5-6814-01 15 68582610 68582610 G T FEM1B Missense_Mutation p.R305I 0.42 tolerated(0.07) probably_damaging(0.994) TCGA-F5-6814-01 15 69072452 69072452 C A ANP32A Nonsense_Mutation p.E240* 0.09 TCGA-F5-6814-01 15 69237990 69237990 T G SPESP1 Silent p.V39V 0.12 TCGA-F5-6814-01 15 69553580 69553580 T A GLCE Silent p.P247P 0.08 TCGA-F5-6814-01 15 69561319 69561319 C T GLCE Silent p.L530L 0.34 TCGA-F5-6814-01 15 70345614 70345614 C A TLE3 Missense_Mutation p.W645C 0.47 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 70952534 70952534 C A UACA Nonsense_Mutation p.E1379* 0.28 TCGA-F5-6814-01 15 70960721 70960721 G T UACA Missense_Mutation p.L768I 0.50 deleterious(0.01) benign(0.209) TCGA-F5-6814-01 15 70961465 70961465 A C UACA Missense_Mutation p.F520V 0.11 tolerated(0.41) probably_damaging(0.998) TCGA-F5-6814-01 15 70983699 70983699 C T UACA Missense_Mutation p.R102K 0.07 tolerated(0.43) possibly_damaging(0.754) TCGA-F5-6814-01 15 71124932 71124932 G A LARP6 Missense_Mutation p.A312V 0.19 tolerated(0.29) benign(0.001) TCGA-F5-6814-01 15 71175129 71175129 G T THAP10 Missense_Mutation p.S183Y 0.32 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 15 72020941 72020941 C T THSD4 Nonsense_Mutation p.R471* 0.31 TCGA-F5-6814-01 15 72172687 72172687 G T MYO9A Missense_Mutation p.L1871I 0.33 tolerated(0.1) probably_damaging(0.997) TCGA-F5-6814-01 15 72191127 72191127 T C MYO9A Silent p.Q1239Q 0.41 TCGA-F5-6814-01 15 72193620 72193620 C T MYO9A Missense_Mutation p.R1021H 0.09 tolerated(0.05) benign(0.014) TCGA-F5-6814-01 15 72432608 72432608 T C SENP8 3'UTR 0.33 TCGA-F5-6814-01 15 72638564 72638564 G A HEXA Intron 0.33 TCGA-F5-6814-01 15 73659910 73659910 G A HCN4 Silent p.F234F 0.20 TCGA-F5-6814-01 15 73766203 73766203 C T C15orf60 Missense_Mutation p.L64F 0.20 deleterious(0) possibly_damaging(0.73) TCGA-F5-6814-01 15 74317227 74317227 G A PML Missense_Mutation p.E405K 0.10 tolerated(0.06) benign(0.201) TCGA-F5-6814-01 15 74425596 74425596 C T ISLR2 Silent p.F167F 0.29 TCGA-F5-6814-01 15 74473232 74473232 C T STRA6 Silent p.S616S 0.13 TCGA-F5-6814-01 15 74625059 74625059 C A CCDC33 Missense_Mutation p.S604Y 0.37 tolerated(0.08) probably_damaging(0.983) TCGA-F5-6814-01 15 74636264 74636264 C T CYP11A1 Missense_Mutation p.R232Q 0.15 tolerated(0.22) benign(0.01) TCGA-F5-6814-01 15 74706894 74706894 T C SEMA7A Missense_Mutation p.T430A 0.20 tolerated(0.85) benign(0.001) TCGA-F5-6814-01 15 74918211 74918211 G A CLK3 Missense_Mutation p.G388D 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6814-01 15 74964091 74964091 T G EDC3 Missense_Mutation p.K63N 0.40 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 75013764 75013764 C A CYP1A1 Nonsense_Mutation p.E345* 0.53 TCGA-F5-6814-01 15 75093264 75093264 G A CSK Splice_Site p.X241_splice 0.30 TCGA-F5-6814-01 15 75119206 75119206 G T CPLX3 Missense_Mutation p.E54D 0.36 deleterious(0.03) benign(0.005) TCGA-F5-6814-01 15 75144418 75144418 T C SCAMP2 Missense_Mutation p.N112S 0.38 tolerated(1) benign(0.001) TCGA-F5-6814-01 15 75673043 75673043 G A SIN3A Nonsense_Mutation p.R1104* 0.31 TCGA-F5-6814-01 15 75977836 75977836 G T CSPG4 Missense_Mutation p.F1332L 0.58 tolerated(0.13) benign(0.165) TCGA-F5-6814-01 15 76075500 76075500 G A RN7SL319P 5'Flank 0.77 TCGA-F5-6814-01 15 76146778 76146778 A C UBE2Q2 Missense_Mutation p.N78H 0.33 tolerated(0.11) probably_damaging(0.987) TCGA-F5-6814-01 15 76235906 76235906 C A NRG4 3'UTR 0.22 TCGA-F5-6814-01 15 76995328 76995328 G A SCAPER Nonsense_Mutation p.R755* 0.77 TCGA-F5-6814-01 15 77067293 77067293 T C SCAPER Missense_Mutation p.K313R 0.74 tolerated(0.38) benign(0.003) TCGA-F5-6814-01 15 77240822 77240822 G A RCN2 Missense_Mutation p.D244N 0.84 tolerated(0.11) benign(0.355) TCGA-F5-6814-01 15 77406844 77406844 G A PEAK1 Missense_Mutation p.S1632F 0.67 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 15 77407557 77407557 G A PEAK1 Silent p.F1394F 0.94 TCGA-F5-6814-01 15 77472485 77472485 A C PEAK1 Missense_Mutation p.F595C 0.75 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 77472681 77472681 G A PEAK1 Nonsense_Mutation p.R530* 0.24 TCGA-F5-6814-01 15 77906957 77906957 G A LINGO1 Missense_Mutation p.A431V 0.13 tolerated(0.55) benign(0) TCGA-F5-6814-01 15 77907976 77907976 G A LINGO1 Silent p.F91F 0.09 TCGA-F5-6814-01 15 78472041 78472041 A G ACSBG1 Silent p.C445C 0.69 TCGA-F5-6814-01 15 78770699 78770699 G A IREB2 Missense_Mutation p.R419Q 0.41 deleterious(0.03) possibly_damaging(0.733) TCGA-F5-6814-01 15 78889049 78889049 G A CHRNA3 Missense_Mutation p.A472V 0.55 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 79059031 79059031 C A ADAMTS7 Missense_Mutation p.E1074D 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 15 79217733 79217733 C T CTSH Missense_Mutation p.S250N 0.64 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 15 79307668 79307668 C A RASGRF1 Splice_Site p.X609_splice 0.31 TCGA-F5-6814-01 15 79324488 79324488 A G RASGRF1 Missense_Mutation p.F377L 0.17 tolerated(0.13) probably_damaging(0.975) TCGA-F5-6814-01 15 79585924 79585924 G A ANKRD34C Missense_Mutation p.E100K 0.19 deleterious(0.01) benign(0.086) TCGA-F5-6814-01 15 79587339 79587339 G T ANKRD34C 3'UTR 0.20 TCGA-F5-6814-01 15 79587624 79587624 C T ANKRD34C 3'UTR 0.18 TCGA-F5-6814-01 15 79589474 79589474 G T ANKRD34C 3'UTR 0.10 TCGA-F5-6814-01 15 79755565 79755565 G A KIAA1024 Missense_Mutation p.E819K 0.20 deleterious(0.02) benign(0.419) TCGA-F5-6814-01 15 80216392 80216392 C T C15ORF37 3'UTR 0.19 TCGA-F5-6814-01 15 80217040 80217040 T G C15ORF37 3'UTR 0.71 TCGA-F5-6814-01 15 81518043 81518043 C A IL16 Missense_Mutation p.F101L 0.41 tolerated(0.42) benign(0.004) TCGA-F5-6814-01 15 81585288 81585288 C A IL16 Nonsense_Mutation p.Y604* 0.73 TCGA-F5-6814-01 15 81615245 81615245 C A STARD5 Silent p.G48G 0.21 TCGA-F5-6814-01 15 82450058 82450058 C A EFTUD1 Nonsense_Mutation p.E676* 0.22 TCGA-F5-6814-01 15 82574459 82574459 G T FAM154B Splice_Site p.X85_splice 0.30 TCGA-F5-6814-01 15 82575367 82575367 C A FAM154B Missense_Mutation p.F387L 0.44 tolerated(0.31) benign(0.02) TCGA-F5-6814-01 15 83428160 83428160 C G FSD2 Missense_Mutation p.K730N 0.14 tolerated(0.11) benign(0.042) TCGA-F5-6814-01 15 83428181 83428181 A G FSD2 Silent p.H723H 0.33 TCGA-F5-6814-01 15 83428284 83428284 A C FSD2 Missense_Mutation p.I689S 0.69 deleterious(0) benign(0.394) TCGA-F5-6814-01 15 83438616 83438616 C A FSD2 Nonsense_Mutation p.E430* 0.21 TCGA-F5-6814-01 15 83491877 83491877 C G WHAMM Nonsense_Mutation p.Y432* 0.74 TCGA-F5-6814-01 15 83561488 83561488 G T HOMER2 Missense_Mutation p.F37L 0.12 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 15 83793518 83793518 T A TM6SF1 Missense_Mutation p.F233Y 0.21 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 15 83820036 83820036 G A HDGFRP3 Silent p.S179S 0.08 TCGA-F5-6814-01 15 85188995 85188995 G A WDR73 Missense_Mutation p.S197L 0.46 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 15 85326090 85326090 G A ZNF592 Missense_Mutation p.D62N 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 85345110 85345110 G T ZNF592 Missense_Mutation p.R1097I 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6814-01 15 85405877 85405877 A C ALPK3 Missense_Mutation p.I1583L 0.10 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 15 86123783 86123783 A C AKAP13 Silent p.P828P 0.28 TCGA-F5-6814-01 15 86807819 86807819 A C AGBL1 Missense_Mutation p.I427L 0.16 tolerated(0.18) benign(0.002) TCGA-F5-6814-01 15 86822869 86822869 G T AGBL1 Splice_Site p.X646_splice 0.78 TCGA-F5-6814-01 15 88671959 88671959 G A NTRK3 Missense_Mutation p.T404M 0.08 tolerated(0.18) benign(0.069) TCGA-F5-6814-01 15 88679799 88679799 G A NTRK3 Nonsense_Mutation p.R222* 0.19 TCGA-F5-6814-01 15 88799145 88799145 G T NTRK3 Silent p.I80I 0.24 TCGA-F5-6814-01 15 89400462 89400462 C A ACAN Missense_Mutation p.P1549H 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 15 89402035 89402035 C A ACAN Silent p.V2073V 0.47 TCGA-F5-6814-01 15 89449895 89449895 C T MFGE8 Missense_Mutation p.E168K 0.79 tolerated(1) benign(0.002) TCGA-F5-6814-01 15 89659646 89659646 G A ABHD2 Missense_Mutation p.V30I 0.80 tolerated(0.34) benign(0.069) TCGA-F5-6814-01 15 89695047 89695047 G A ABHD2 Missense_Mutation p.D112N 0.10 deleterious(0.01) probably_damaging(0.935) TCGA-F5-6814-01 15 89762256 89762256 C A RLBP1 5'UTR 0.12 TCGA-F5-6814-01 15 89790925 89790925 A C FANCI Missense_Mutation p.K16T 0.08 deleterious(0.04) benign(0.239) TCGA-F5-6814-01 15 89817449 89817449 A C FANCI Missense_Mutation p.Q342H 0.30 tolerated(0.08) benign(0.019) TCGA-F5-6814-01 15 89826381 89826381 G A FANCI Missense_Mutation p.R533Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 15 90265325 90265325 C A WDR93 Missense_Mutation p.L279I 0.79 tolerated(0.36) benign(0.097) TCGA-F5-6814-01 15 90628058 90628058 C T IDH2 Missense_Mutation p.G421S 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-F5-6814-01 15 90814984 90814984 C A NGRN Missense_Mutation p.F280L 0.37 tolerated(0.08) benign(0.186) TCGA-F5-6814-01 15 90992792 90992792 G A IQGAP1 Missense_Mutation p.S360N 0.11 tolerated(0.61) benign(0) TCGA-F5-6814-01 15 91352370 91352370 C A BLM Missense_Mutation p.S1252Y 0.13 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 15 91522392 91522392 A C PRC1 Missense_Mutation p.F368C 0.66 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 15 92663790 92663790 G A SLCO3A1 Missense_Mutation p.A369T 0.25 tolerated(0.17) probably_damaging(0.96) TCGA-F5-6814-01 15 93524663 93524663 A G CHD2 Silent p.T1014T 0.23 TCGA-F5-6814-01 15 93536106 93536106 G A CHD2 Missense_Mutation p.R1158H 0.28 tolerated(0.26) benign(0.195) TCGA-F5-6814-01 15 94927293 94927293 G A MCTP2 Missense_Mutation p.R542Q 0.26 deleterious(0) possibly_damaging(0.845) TCGA-F5-6814-01 15 94942238 94942238 G T MCTP2 Nonsense_Mutation p.E613* 0.11 TCGA-F5-6814-01 15 95001405 95001405 G A MCTP2 Missense_Mutation p.V764I 0.13 tolerated(0.51) benign(0.08) TCGA-F5-6814-01 15 99023936 99023936 T G FAM169B Missense_Mutation p.N26T 0.33 deleterious(0.02) benign(0.407) TCGA-F5-6814-01 15 99671341 99671341 G T SYNM Nonsense_Mutation p.E925* 0.71 TCGA-F5-6814-01 16 1004425 1004425 G A LMF1 Silent p.C145C 0.35 TCGA-F5-6814-01 16 10274121 10274121 C T GRIN2A Missense_Mutation p.E50K 0.38 tolerated(0.39) benign(0.026) TCGA-F5-6814-01 16 10524735 10524735 G T ATF7IP2 Missense_Mutation p.E86D 0.46 tolerated(0.3) benign(0.213) TCGA-F5-6814-01 16 10525025 10525025 C A ATF7IP2 Missense_Mutation p.S183Y 0.32 tolerated(0.38) benign(0.006) TCGA-F5-6814-01 16 11066825 11066825 G A CLEC16A Missense_Mutation p.R212Q 0.39 deleterious(0.01) benign(0.389) TCGA-F5-6814-01 16 11650297 11650297 C T LITAF Intron 0.29 TCGA-F5-6814-01 16 11864665 11864665 G T ZC3H7A Nonsense_Mutation p.S361* 0.37 TCGA-F5-6814-01 16 12060191 12060191 A C TNFRSF17 Missense_Mutation p.K90N 0.26 deleterious(0.01) possibly_damaging(0.691) TCGA-F5-6814-01 16 12798695 12798695 G T CPPED1 Missense_Mutation p.F167L 0.37 tolerated(1) benign(0.002) TCGA-F5-6814-01 16 12875167 12875167 T C CPPED1 Missense_Mutation p.D55G 0.43 deleterious(0.03) benign(0.049) TCGA-F5-6814-01 16 129252 129252 G A MPG 5'UTR 0.34 TCGA-F5-6814-01 16 14024573 14024573 C T ERCC4 Missense_Mutation p.R267C 0.37 deleterious(0.01) benign(0.032) TCGA-F5-6814-01 16 1412863 1412863 A C GNPTG Missense_Mutation p.K260T 0.39 tolerated(0.23) benign(0.022) TCGA-F5-6814-01 16 14306244 14306244 T C MKL2 Missense_Mutation p.I85T 0.20 tolerated(0.06) probably_damaging(0.913) TCGA-F5-6814-01 16 14355028 14355028 C A MKL2 Missense_Mutation p.F959L 0.30 tolerated(1) benign(0.045) TCGA-F5-6814-01 16 1478424 1478424 A G C16orf91 Missense_Mutation p.L76P 0.17 deleterious_low_confidence(0) benign(0.06) TCGA-F5-6814-01 16 14947853 14947853 C A NOMO1 Missense_Mutation p.F311L 0.27 deleterious(0.01) possibly_damaging(0.804) TCGA-F5-6814-01 16 14958573 14958573 C A NOMO1 Silent p.V509V 0.15 TCGA-F5-6814-01 16 14989996 14989996 T C NOMO1 3'UTR 0.13 TCGA-F5-6814-01 16 15164046 15164046 G A RRN3 Missense_Mutation p.S442L 0.22 deleterious(0.02) probably_damaging(0.968) TCGA-F5-6814-01 16 15164089 15164089 G T RRN3 Missense_Mutation p.L428I 0.25 tolerated(0.06) benign(0.376) TCGA-F5-6814-01 16 1556969 1556969 G A TELO2 Missense_Mutation p.D715N 0.40 deleterious(0) possibly_damaging(0.888) TCGA-F5-6814-01 16 15802675 15802675 G A MYH11 Intron 0.38 TCGA-F5-6814-01 16 15977928 15977928 C A FOPNL Nonsense_Mutation p.E55* 0.16 TCGA-F5-6814-01 16 16110415 16110415 T G ABCC1 Missense_Mutation p.I184M 0.13 tolerated(0.06) benign(0.024) TCGA-F5-6814-01 16 16138376 16138376 G A ABCC1 Silent p.A293A 0.26 TCGA-F5-6814-01 16 1652490 1652490 C A IFT140 Nonsense_Mutation p.E84* 0.29 TCGA-F5-6814-01 16 1705251 1705251 A C CRAMP1L Missense_Mutation p.S357R 0.15 deleterious(0.02) probably_damaging(0.991) TCGA-F5-6814-01 16 17221565 17221565 G A XYLT1 Silent p.I727I 0.39 TCGA-F5-6814-01 16 1747850 1747850 C T HN1L Missense_Mutation p.S125L 0.41 tolerated(0.35) benign(0.006) TCGA-F5-6814-01 16 1808992 1808992 C A MAPK8IP3 Missense_Mutation p.F413L 0.33 tolerated(0.18) benign(0.141) TCGA-F5-6814-01 16 1810380 1810380 G T MAPK8IP3 Splice_Site p.X434_splice 0.33 TCGA-F5-6814-01 16 18549971 18549971 C T NOMO2 Missense_Mutation p.R366H 0.31 tolerated(0.39) benign(0.046) TCGA-F5-6814-01 16 1878645 1878645 T G FAHD1 Intron 0.40 TCGA-F5-6814-01 16 18864947 18864947 T C SMG1 Missense_Mutation p.T1576A 0.30 tolerated(0.96) benign(0.024) TCGA-F5-6814-01 16 18887620 18887620 C A SMG1 Missense_Mutation p.M572I 0.29 tolerated(0.16) benign(0.166) TCGA-F5-6814-01 16 1894875 1894875 C A MEIOB Nonsense_Mutation p.E290* 0.37 TCGA-F5-6814-01 16 19056743 19056743 C T TMC7 Silent p.F512F 0.40 TCGA-F5-6814-01 16 19085285 19085285 G T COQ7 Nonsense_Mutation p.E99* 0.41 TCGA-F5-6814-01 16 19131772 19131772 T C ITPRIPL2 3'UTR 0.31 TCGA-F5-6814-01 16 19475304 19475304 G T TMC5 Missense_Mutation p.K481N 0.30 tolerated(0.3) benign(0.013) TCGA-F5-6814-01 16 19547634 19547634 C A CCP110 Missense_Mutation p.L215I 0.25 tolerated(0.51) benign(0.379) TCGA-F5-6814-01 16 19562782 19562782 A C CCP110 3'UTR 0.43 TCGA-F5-6814-01 16 19648967 19648967 C A C16orf62 Missense_Mutation p.L652I 0.32 tolerated(0.16) benign(0.421) TCGA-F5-6814-01 16 19838372 19838372 G T IQCK Nonsense_Mutation p.E239* 0.19 TCGA-F5-6814-01 16 20043846 20043846 G T GPR139 Silent p.I91I 0.14 TCGA-F5-6814-01 16 20043923 20043923 G T GPR139 Missense_Mutation p.L66I 0.28 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 16 20331091 20331091 C A GP2 Splice_Site p.X290_splice 0.45 TCGA-F5-6814-01 16 20335403 20335403 G A GP2 Silent p.S90S 0.21 TCGA-F5-6814-01 16 20344509 20344509 G A UMOD 3'UTR 0.22 TCGA-F5-6814-01 16 2034899 2034899 C A GFER Missense_Mutation p.S137Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 16 20386178 20386178 T C PDILT Missense_Mutation p.H216R 0.35 tolerated(0.83) benign(0.109) TCGA-F5-6814-01 16 20476914 20476914 G T ACSM2A Nonsense_Mutation p.E85* 0.10 TCGA-F5-6814-01 16 20570694 20570694 C A ACSM2B Nonsense_Mutation p.E85* 0.25 TCGA-F5-6814-01 16 20750281 20750281 C A THUMPD1 Missense_Mutation p.R115I 0.11 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 16 20792437 20792437 G A ACSM3 Silent p.P308P 0.41 TCGA-F5-6814-01 16 20797542 20797542 G A ACSM3 Intron 0.32 TCGA-F5-6814-01 16 20807875 20807875 T C ERI2 3'UTR 0.38 TCGA-F5-6814-01 16 20975819 20975819 G A DNAH3 Silent p.N3129N 0.29 TCGA-F5-6814-01 16 21035923 21035923 C A DNAH3 Nonsense_Mutation p.E1881* 0.38 TCGA-F5-6814-01 16 21098263 21098263 C A DNAH3 Missense_Mutation p.E928D 0.11 tolerated(0.17) benign(0.06) TCGA-F5-6814-01 16 21152691 21152691 T G DNAH3 Missense_Mutation p.N151H 0.17 tolerated(0.12) benign(0.002) TCGA-F5-6814-01 16 21213315 21213315 G A ZP2 Silent p.N439N 0.33 TCGA-F5-6814-01 16 21278951 21278951 A G CRYM Silent p.D199D 0.39 TCGA-F5-6814-01 16 21327253 21327253 A C CRYM-AS1 RNA 0.56 TCGA-F5-6814-01 16 2144151 2144151 C G PKD1 Silent p.G3520G 0.34 TCGA-F5-6814-01 16 2153818 2153818 A G PKD1 Missense_Mutation p.M2747T 0.25 benign(0.011) TCGA-F5-6814-01 16 22114847 22114847 G T VWA3A Missense_Mutation p.K160N 0.24 deleterious(0.02) benign(0.078) TCGA-F5-6814-01 16 22128466 22128466 G A VWA3A Missense_Mutation p.G320D 0.13 deleterious(0) probably_damaging(0.928) TCGA-F5-6814-01 16 22343471 22343471 G T POLR3E Missense_Mutation p.D679Y 0.33 deleterious(0.02) possibly_damaging(0.642) TCGA-F5-6814-01 16 22358911 22358911 G A CDR2 Missense_Mutation p.A247V 0.34 tolerated(1) benign(0.079) TCGA-F5-6814-01 16 2236714 2236714 G A CASKIN1 Nonsense_Mutation p.R348* 0.42 TCGA-F5-6814-01 16 2287545 2287545 G T DNASE1L2 Missense_Mutation p.Q162H 0.57 deleterious(0.03) benign(0.015) TCGA-F5-6814-01 16 22926818 22926818 G T HS3ST2 Nonsense_Mutation p.E347* 0.34 TCGA-F5-6814-01 16 2293351 2293351 A G ECI1 Silent p.N177N 0.19 TCGA-F5-6814-01 16 23080284 23080284 T G USP31 Missense_Mutation p.S1048R 0.17 tolerated_low_confidence(0.09) benign(0.01) TCGA-F5-6814-01 16 23498109 23498109 A G GGA2 Silent p.L194L 0.23 TCGA-F5-6814-01 16 23578364 23578364 G A UBFD1 Missense_Mutation p.E265K 0.39 tolerated(0.24) benign(0.003) TCGA-F5-6814-01 16 23598553 23598553 C T NDUFAB1 Missense_Mutation p.V86I 0.42 tolerated(0.08) benign(0.382) TCGA-F5-6814-01 16 23641451 23641451 A C PALB2 Missense_Mutation p.L675R 0.12 tolerated(0.06) benign(0.045) TCGA-F5-6814-01 16 23646884 23646884 G T PALB2 Missense_Mutation p.S328Y 0.45 tolerated(0.15) possibly_damaging(0.891) TCGA-F5-6814-01 16 23999909 23999909 G A PRKCB Missense_Mutation p.D96N 0.36 deleterious(0.05) benign(0.342) TCGA-F5-6814-01 16 24183655 24183655 T C PRKCB Missense_Mutation p.V435A 0.22 tolerated(0.22) benign(0.011) TCGA-F5-6814-01 16 24573185 24573185 G T RBBP6 Missense_Mutation p.R331I 0.36 deleterious_low_confidence(0.04) probably_damaging(0.984) TCGA-F5-6814-01 16 24578822 24578822 G T RBBP6 Nonsense_Mutation p.E650* 0.46 TCGA-F5-6814-01 16 24581613 24581613 C A RBBP6 Missense_Mutation p.S1201Y 0.18 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 16 24788505 24788505 C T TNRC6A Nonsense_Mutation p.R139* 0.31 TCGA-F5-6814-01 16 24826591 24826591 C T TNRC6A Missense_Mutation p.S1599L 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 16 24902195 24902195 G A SLC5A11 Missense_Mutation p.A224T 0.22 tolerated(0.6) benign(0.297) TCGA-F5-6814-01 16 24902291 24902291 G T SLC5A11 Missense_Mutation p.D256Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 16 24958864 24958864 T G ARHGAP17 Missense_Mutation p.M394L 0.09 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 16 24960774 24960774 A C ARHGAP17 Missense_Mutation p.L360V 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 16 2578249 2578249 G A AMDHD2 Missense_Mutation p.D244N 0.46 tolerated(0.18) possibly_damaging(0.907) TCGA-F5-6814-01 16 26147110 26147110 G T HS3ST4 Missense_Mutation p.K304N 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 16 26147192 26147192 C T HS3ST4 Nonsense_Mutation p.R332* 0.29 TCGA-F5-6814-01 16 27231979 27231979 C A KDM8 Missense_Mutation p.F431L 0.39 deleterious(0) benign(0.34) TCGA-F5-6814-01 16 27659970 27659970 G A KIAA0556 Missense_Mutation p.E152K 0.29 tolerated(0.74) benign(0.026) TCGA-F5-6814-01 16 27715253 27715253 C T KIAA0556 Silent p.V441V 0.42 TCGA-F5-6814-01 16 27720105 27720105 C T KIAA0556 Missense_Mutation p.S490L 0.44 tolerated(0.16) benign(0.002) TCGA-F5-6814-01 16 27895854 27895854 T C GSG1L Missense_Mutation p.D168G 0.33 tolerated(0.7) probably_damaging(0.937) TCGA-F5-6814-01 16 2813115 2813115 G A SRRM2 Silent p.E862E 0.12 TCGA-F5-6814-01 16 2813897 2813897 C T SRRM2 Missense_Mutation p.A1123V 0.33 unknown(0) TCGA-F5-6814-01 16 2813955 2813955 T C SRRM2 Silent p.S1142S 0.24 TCGA-F5-6814-01 16 28515326 28515326 A G IL27 Missense_Mutation p.V26A 0.24 tolerated_low_confidence(0.14) benign(0.009) TCGA-F5-6814-01 16 2882066 2882066 G A ZG16B Missense_Mutation p.S178N 0.30 tolerated(0.55) benign(0.087) TCGA-F5-6814-01 16 28854266 28854266 G A TUFM 3'UTR 0.30 TCGA-F5-6814-01 16 28962503 28962503 A C NFATC2IP Missense_Mutation p.E57D 0.33 tolerated_low_confidence(1) benign(0.002) TCGA-F5-6814-01 16 29089270 29089270 G A RRN3P2 RNA 0.45 TCGA-F5-6814-01 16 29678369 29678369 T G SPN 3'UTR 0.12 TCGA-F5-6814-01 16 29824592 29824592 G A PRRT2 Missense_Mutation p.E73K 0.29 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-F5-6814-01 16 29883583 29883583 G A SEZ6L2 Silent p.F876F 0.38 TCGA-F5-6814-01 16 30387531 30387531 C T MYLPF Silent p.F54F 0.42 TCGA-F5-6814-01 16 30389122 30389122 G T MYLPF Missense_Mutation p.K137N 0.23 tolerated(0.16) benign(0.004) TCGA-F5-6814-01 16 30408683 30408683 A G ZNF48 Missense_Mutation p.N38D 0.24 tolerated(1) benign(0) TCGA-F5-6814-01 16 304474 304474 C T ITFG3 Missense_Mutation p.S21L 0.26 tolerated(0.4) benign(0.006) TCGA-F5-6814-01 16 30536940 30536940 G A ZNF768 Missense_Mutation p.A174V 0.12 deleterious_low_confidence(0.01) benign(0.026) TCGA-F5-6814-01 16 30732240 30732240 G A SRCAP Missense_Mutation p.R1065Q 0.33 unknown(0) TCGA-F5-6814-01 16 3085225 3085225 C T CCDC64B Silent p.E91E 0.25 TCGA-F5-6814-01 16 30994997 30994997 C T SETD1A Silent p.G1618G 0.11 TCGA-F5-6814-01 16 31004540 31004540 C T STX1B Missense_Mutation p.E233K 0.33 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 16 31012419 31012419 A G STX1B Silent p.D67D 0.10 TCGA-F5-6814-01 16 3108874 3108874 G T MMP25 Missense_Mutation p.K488N 0.38 tolerated(0.79) benign(0.388) TCGA-F5-6814-01 16 31091579 31091579 G A ZNF646 Missense_Mutation p.G1312S 0.25 tolerated(0.07) benign(0.071) TCGA-F5-6814-01 16 31106923 31106923 G T VKORC1 5'Flank 0.34 TCGA-F5-6814-01 16 31201371 31201371 C A FUS Missense_Mutation p.F359L 0.22 deleterious(0.02) possibly_damaging(0.81) TCGA-F5-6814-01 16 31308895 31308895 G A ITGAM Missense_Mutation p.D473N 0.56 tolerated(0.06) benign(0.177) TCGA-F5-6814-01 16 31341692 31341692 G T ITGAM Nonsense_Mutation p.E1043* 0.37 TCGA-F5-6814-01 16 3140489 3140489 C T ZSCAN10 Missense_Mutation p.G261S 0.33 tolerated(0.29) benign(0.008) TCGA-F5-6814-01 16 31421817 31421817 G A ITGAD Silent p.E395E 0.30 TCGA-F5-6814-01 16 31426311 31426311 C T ITGAD Missense_Mutation p.S761F 0.25 tolerated(0.13) probably_damaging(0.944) TCGA-F5-6814-01 16 31477235 31477235 G A ARMC5 Silent p.T643T 0.47 TCGA-F5-6814-01 16 3255004 3255004 G T OR1F1 Missense_Mutation p.S253I 0.31 deleterious(0) benign(0.167) TCGA-F5-6814-01 16 3282434 3282434 T C ZNF200 Silent p.E151E 0.14 TCGA-F5-6814-01 16 32893402 32893402 T C RP11-989E6.3 5'Flank 0.38 TCGA-F5-6814-01 16 3340374 3340374 G T ZNF263 Missense_Mutation p.R623I 0.36 deleterious(0) possibly_damaging(0.891) TCGA-F5-6814-01 16 3349820 3349820 C A TIGD7 Missense_Mutation p.W265C 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 16 3351981 3351981 A C TIGD7 5'UTR 0.17 TCGA-F5-6814-01 16 3458776 3458776 A C ZNF174 Missense_Mutation p.N361H 0.44 tolerated(0.07) benign(0.046) TCGA-F5-6814-01 16 34739633 34739633 A C RP11-80F22.15 RNA 0.21 TCGA-F5-6814-01 16 3569932 3569932 C A CLUAP1 Silent p.L203L 0.44 TCGA-F5-6814-01 16 3613370 3613370 G A NLRC3 Missense_Mutation p.P570L 0.43 tolerated(0.13) possibly_damaging(0.848) TCGA-F5-6814-01 16 3725337 3725337 C A TRAP1 Missense_Mutation p.M292I 0.26 tolerated(0.61) benign(0.001) TCGA-F5-6814-01 16 3860669 3860669 C T CREBBP Missense_Mutation p.V304I 0.17 possibly_damaging(0.594) TCGA-F5-6814-01 16 4015835 4015835 C T ADCY9 Missense_Mutation p.E1335K 0.36 tolerated_low_confidence(0.33) benign(0.098) TCGA-F5-6814-01 16 46615858 46615858 C T SHCBP1 Missense_Mutation p.R601K 0.08 tolerated(0.92) benign(0.002) TCGA-F5-6814-01 16 46771765 46771765 C A MYLK3 Nonsense_Mutation p.G287* 0.32 TCGA-F5-6814-01 16 46843522 46843522 T G C16orf87 Missense_Mutation p.E113D 0.35 tolerated(0.18) benign(0) TCGA-F5-6814-01 16 47143394 47143394 G A NETO2 Missense_Mutation p.P295S 0.14 deleterious(0.01) possibly_damaging(0.658) TCGA-F5-6814-01 16 47143460 47143460 G A NETO2 Nonsense_Mutation p.R273* 0.40 TCGA-F5-6814-01 16 4744911 4744911 C T NUDT16L1 Intron 0.44 TCGA-F5-6814-01 16 4796397 4796397 C T C16orf71 Silent p.G355G 0.16 TCGA-F5-6814-01 16 4797478 4797478 G A C16orf71 Missense_Mutation p.R472Q 0.24 tolerated(0.56) benign(0.007) TCGA-F5-6814-01 16 48172255 48172255 C T ABCC12 Missense_Mutation p.R288Q 0.24 tolerated(0.42) benign(0.379) TCGA-F5-6814-01 16 48201105 48201105 C T ABCC11 3'UTR 0.44 TCGA-F5-6814-01 16 48201121 48201121 C T ABCC11 3'UTR 0.36 TCGA-F5-6814-01 16 48265851 48265851 C A ABCC11 5'UTR 0.33 TCGA-F5-6814-01 16 48595925 48595925 G T N4BP1 Missense_Mutation p.S210Y 0.40 tolerated(0.08) benign(0.252) TCGA-F5-6814-01 16 4920312 4920312 G T UBN1 Missense_Mutation p.K427N 0.11 deleterious(0) probably_damaging(0.975) TCGA-F5-6814-01 16 49313348 49313348 C T CBLN1 Silent p.S183S 0.25 TCGA-F5-6814-01 16 49557543 49557543 C T ZNF423 Missense_Mutation p.E1273K 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 16 49671193 49671193 C T ZNF423 Missense_Mutation p.A624T 0.26 tolerated(0.58) benign(0.002) TCGA-F5-6814-01 16 5009335 5009335 G T SEC14L5 Missense_Mutation p.R4I 0.36 deleterious(0) benign(0.082) TCGA-F5-6814-01 16 50106517 50106517 G T HEATR3 Nonsense_Mutation p.E172* 0.12 TCGA-F5-6814-01 16 50128692 50128692 G T HEATR3 Missense_Mutation p.K529N 0.09 tolerated(0.21) benign(0.007) TCGA-F5-6814-01 16 50353004 50353004 G A BRD7 3'UTR 0.38 TCGA-F5-6814-01 16 50353864 50353864 G A BRD7 Nonsense_Mutation p.R613* 0.28 TCGA-F5-6814-01 16 5037566 5037566 G T SEC14L5 Missense_Mutation p.E24D 0.29 deleterious(0.03) possibly_damaging(0.906) TCGA-F5-6814-01 16 50744653 50744653 C T NOD2 Silent p.G277G 0.32 TCGA-F5-6814-01 16 5077160 5077160 G A NAGPA Missense_Mutation p.A439V 0.42 benign(0.028) TCGA-F5-6814-01 16 50813946 50813946 A G CYLD Silent p.G503G 0.40 TCGA-F5-6814-01 16 50826599 50826599 C A CYLD Missense_Mutation p.T778K 0.28 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 16 5097914 5097914 G A C16orf89 Missense_Mutation p.S307L 0.30 tolerated(1) benign(0) TCGA-F5-6814-01 16 51171229 51171229 T G SALL1 Missense_Mutation p.N1257H 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 16 51171415 51171415 G T SALL1 Silent p.R1195R 0.47 TCGA-F5-6814-01 16 51173681 51173681 A C SALL1 Missense_Mutation p.F818V 0.23 tolerated(0.51) benign(0.002) TCGA-F5-6814-01 16 51175357 51175357 G T SALL1 Missense_Mutation p.S259Y 0.47 deleterious(0.04) possibly_damaging(0.868) TCGA-F5-6814-01 16 51175382 51175382 G A SALL1 Missense_Mutation p.R251C 0.28 tolerated(0.06) probably_damaging(0.912) TCGA-F5-6814-01 16 51175391 51175391 C T SALL1 Missense_Mutation p.E248K 0.60 deleterious(0) benign(0.043) TCGA-F5-6814-01 16 53342749 53342749 A C CHD9 Missense_Mutation p.K2386T 0.21 unknown(0) TCGA-F5-6814-01 16 53404826 53404826 A C RP11-44F14.1 RNA 0.33 TCGA-F5-6814-01 16 53476720 53476720 T G RBL2 Missense_Mutation p.F174L 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 16 53493525 53493525 C A RBL2 Missense_Mutation p.L448I 0.23 deleterious(0.01) benign(0.219) TCGA-F5-6814-01 16 53526331 53526331 G A AKTIP Missense_Mutation p.A291V 0.32 tolerated_low_confidence(0.3) benign(0.023) TCGA-F5-6814-01 16 53675268 53675268 A C RPGRIP1L Missense_Mutation p.F935V 0.23 tolerated(0.38) benign(0.001) TCGA-F5-6814-01 16 53679807 53679807 G A RPGRIP1L Nonsense_Mutation p.R805* 0.28 TCGA-F5-6814-01 16 53705471 53705471 C A RPGRIP1L Nonsense_Mutation p.E352* 0.48 TCGA-F5-6814-01 16 54319018 54319018 A C IRX3 Missense_Mutation p.L259V 0.47 tolerated(0.32) benign(0.364) TCGA-F5-6814-01 16 54966757 54966757 C T IRX5 Silent p.N199N 0.31 TCGA-F5-6814-01 16 55361584 55361584 A G IRX6 Missense_Mutation p.E167G 0.20 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 16 55364267 55364267 C T IRX6 3'UTR 0.19 TCGA-F5-6814-01 16 55530930 55530930 C T MMP2 Missense_Mutation p.A522V 0.53 deleterious(0.04) probably_damaging(0.944) TCGA-F5-6814-01 16 55729278 55729278 G T SLC6A2 Nonsense_Mutation p.E371* 0.43 TCGA-F5-6814-01 16 55844559 55844559 C A CES1 Silent p.L396L 0.18 TCGA-F5-6814-01 16 57206201 57206201 G A FAM192A Nonsense_Mutation p.R104* 0.09 TCGA-F5-6814-01 16 57805151 57805151 C T KIFC3 Missense_Mutation p.E242K 0.34 tolerated(0.35) possibly_damaging(0.781) TCGA-F5-6814-01 16 57945711 57945711 G A CNGB1 Missense_Mutation p.S813L 0.46 deleterious(0) possibly_damaging(0.849) TCGA-F5-6814-01 16 58032182 58032182 G T ZNF319 5'UTR 0.34 TCGA-F5-6814-01 16 58564239 58564239 A G CNOT1 Missense_Mutation p.Y2064H 0.29 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 16 58572153 58572153 C T CNOT1 Missense_Mutation p.R1718Q 0.15 deleterious(0) benign(0.174) TCGA-F5-6814-01 16 58608963 58608963 C T CNOT1 Missense_Mutation p.R592H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 16 61761051 61761051 C A CDH8 Nonsense_Mutation p.E495* 0.34 TCGA-F5-6814-01 16 61854904 61854904 C T CDH8 Missense_Mutation p.D317N 0.43 tolerated(0.29) benign(0.183) TCGA-F5-6814-01 16 66551120 66551120 T C TK2 Splice_Site p.X180_splice 0.13 TCGA-F5-6814-01 16 66857504 66857504 C A NAE1 Splice_Site p.X84_splice 0.30 TCGA-F5-6814-01 16 66921520 66921520 T G PDP2 3'UTR 0.40 TCGA-F5-6814-01 16 66946436 66946436 C A CDH16 Missense_Mutation p.D444Y 0.09 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 16 66955948 66955948 C T RRAD 3'UTR 0.36 TCGA-F5-6814-01 16 66998402 66998402 A C CES3 Missense_Mutation p.I235L 0.22 deleterious(0) benign(0.005) TCGA-F5-6814-01 16 67043020 67043020 G T CES4A 3'UTR 0.13 TCGA-F5-6814-01 16 67174480 67174480 T A C16orf70 Missense_Mutation p.Y288N 0.11 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 16 67195752 67195752 C A FBXL8 Missense_Mutation p.L22M 0.30 deleterious(0.05) probably_damaging(0.961) TCGA-F5-6814-01 16 67226711 67226711 T G E2F4 Missense_Mutation p.I61M 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 16 67472708 67472708 G T ATP6V0D1 Missense_Mutation p.F294L 0.29 deleterious(0.05) possibly_damaging(0.521) TCGA-F5-6814-01 16 67572956 67572956 G T FAM65A Missense_Mutation p.K127N 0.31 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 16 67577269 67577269 C T FAM65A Missense_Mutation p.R853C 0.33 deleterious(0.02) possibly_damaging(0.689) TCGA-F5-6814-01 16 67644754 67644754 G A CTCF Missense_Mutation p.E7K 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-F5-6814-01 16 67663406 67663406 C T CTCF Missense_Mutation p.R603C 0.28 deleterious(0.01) benign(0.446) TCGA-F5-6814-01 16 67912534 67912534 G A EDC4 Missense_Mutation p.R395H 0.32 deleterious(0) benign(0.444) TCGA-F5-6814-01 16 67970608 67970608 C A PSMB10 Missense_Mutation p.E15D 0.29 tolerated(0.94) benign(0.003) TCGA-F5-6814-01 16 67974160 67974160 G T LCAT Missense_Mutation p.L324I 0.32 deleterious(0) possibly_damaging(0.574) TCGA-F5-6814-01 16 67984927 67984927 C T SLC12A4 Missense_Mutation p.R447H 0.33 deleterious(0.01) possibly_damaging(0.799) TCGA-F5-6814-01 16 68024000 68024000 G A DPEP2 Missense_Mutation p.S315F 0.29 tolerated(0.59) possibly_damaging(0.883) TCGA-F5-6814-01 16 68056573 68056573 T C DDX28 Missense_Mutation p.K178R 0.18 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 16 68265144 68265144 G A ESRP2 Nonsense_Mutation p.R550* 0.22 TCGA-F5-6814-01 16 68265402 68265402 T C ESRP2 Missense_Mutation p.M499V 0.16 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 16 68391086 68391086 G A PRMT7 Missense_Mutation p.D680N 0.38 tolerated(0.32) benign(0.014) TCGA-F5-6814-01 16 68398921 68398921 T G SMPD3 Missense_Mutation p.Q466H 0.38 deleterious(0.05) benign(0.018) TCGA-F5-6814-01 16 68398964 68398964 C A SMPD3 Missense_Mutation p.R452I 0.56 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 16 68598434 68598434 G T ZFP90 Nonsense_Mutation p.E582* 0.29 TCGA-F5-6814-01 16 68598471 68598471 C A ZFP90 Missense_Mutation p.T594N 0.33 deleterious(0.03) possibly_damaging(0.858) TCGA-F5-6814-01 16 68842692 68842692 G T CDH1 Nonsense_Mutation p.E210* 0.52 TCGA-F5-6814-01 16 69353448 69353448 T C VPS4A Splice_Site p.X207_splice 0.17 TCGA-F5-6814-01 16 69354176 69354176 C A VPS4A Missense_Mutation p.F251L 0.29 tolerated(0.35) benign(0.238) TCGA-F5-6814-01 16 69782134 69782134 C A NOB1 Splice_Site p.X275_splice 0.54 TCGA-F5-6814-01 16 70172816 70172816 G T PDPR Missense_Mutation p.W402L 0.15 tolerated(0.27) probably_damaging(0.94) TCGA-F5-6814-01 16 70292911 70292911 A C AARS Missense_Mutation p.I655S 0.21 tolerated(0.06) benign(0.068) TCGA-F5-6814-01 16 70524281 70524281 G A COG4 Silent p.N554N 0.26 TCGA-F5-6814-01 16 70548320 70548320 A C COG4 Missense_Mutation p.D154E 0.30 deleterious(0) possibly_damaging(0.61) TCGA-F5-6814-01 16 70562790 70562790 G T SF3B3 Nonsense_Mutation p.E29* 0.36 TCGA-F5-6814-01 16 70562792 70562792 A C SF3B3 Missense_Mutation p.E29D 0.38 tolerated(0.05) possibly_damaging(0.539) TCGA-F5-6814-01 16 70575581 70575581 T C SF3B3 Silent p.Y359Y 0.41 TCGA-F5-6814-01 16 70595548 70595548 A C SF3B3 Missense_Mutation p.S717R 0.15 deleterious(0) probably_damaging(0.964) TCGA-F5-6814-01 16 70602302 70602302 C A SF3B3 Silent p.I1023I 0.41 TCGA-F5-6814-01 16 70884525 70884525 C A HYDIN Missense_Mutation p.Q4159H 0.15 possibly_damaging(0.891) TCGA-F5-6814-01 16 70889099 70889099 G A HYDIN Silent p.R4125R 0.57 TCGA-F5-6814-01 16 71163646 71163646 C T HYDIN Missense_Mutation p.R375Q 0.42 benign(0.074) TCGA-F5-6814-01 16 71417299 71417299 G A CALB2 Silent p.A143A 0.39 TCGA-F5-6814-01 16 71509740 71509740 C A ZNF19 Missense_Mutation p.R237I 0.26 deleterious(0.01) possibly_damaging(0.855) TCGA-F5-6814-01 16 71571241 71571241 C A CHST4 Missense_Mutation p.L221I 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 16 71571459 71571459 C T CHST4 Silent p.F293F 0.21 TCGA-F5-6814-01 16 71572275 71572275 C A CHST4 3'UTR 0.38 TCGA-F5-6814-01 16 71889368 71889368 C T ATXN1L 3'UTR 0.43 TCGA-F5-6814-01 16 71890588 71890588 A G ATXN1L 3'UTR 0.32 TCGA-F5-6814-01 16 71894552 71894552 T C ZNF821 Missense_Mutation p.N203S 0.20 tolerated(1) benign(0.001) TCGA-F5-6814-01 16 71895734 71895734 G A ZNF821 Nonsense_Mutation p.R177* 0.47 TCGA-F5-6814-01 16 71963998 71963998 G A IST1 3'Flank 0.36 TCGA-F5-6814-01 16 71978024 71978024 G T PKD1L3 RNA 0.23 TCGA-F5-6814-01 16 71983778 71983778 A C PKD1L3 RNA 0.26 TCGA-F5-6814-01 16 72094565 72094565 A G HP Missense_Mutation p.I333V 0.43 tolerated(1) possibly_damaging(0.688) TCGA-F5-6814-01 16 72131672 72131672 G A DHX38 Missense_Mutation p.R203Q 0.40 tolerated(0.14) benign(0.006) TCGA-F5-6814-01 16 72134341 72134341 G A DHX38 Missense_Mutation p.E375K 0.24 tolerated(0.1) benign(0.091) TCGA-F5-6814-01 16 72170640 72170640 G A PMFBP1 Missense_Mutation p.R333C 0.09 deleterious(0) probably_damaging(0.941) TCGA-F5-6814-01 16 726671 726671 G T RHBDL1 Splice_Site p.X133_splice 0.25 TCGA-F5-6814-01 16 72821037 72821037 T G ZFHX3 3'UTR 0.14 TCGA-F5-6814-01 16 72829034 72829034 G A ZFHX3 Missense_Mutation p.T2516I 0.32 unknown(0) TCGA-F5-6814-01 16 74339550 74339550 G T PSMD7 Missense_Mutation p.K298N 0.38 tolerated(0.2) unknown(0) TCGA-F5-6814-01 16 74386230 74386230 T C RP11-252A24.2 RNA 0.10 TCGA-F5-6814-01 16 74442934 74442934 C T CLEC18B Silent p.E446E 0.25 TCGA-F5-6814-01 16 74447052 74447052 T C CLEC18B Missense_Mutation p.N187D 0.09 tolerated(0.06) possibly_damaging(0.488) TCGA-F5-6814-01 16 74537527 74537527 T C GLG1 Missense_Mutation p.I226V 0.19 tolerated(0.18) benign(0.03) TCGA-F5-6814-01 16 7645562 7645562 C T RBFOX1 Silent p.F180F 0.33 TCGA-F5-6814-01 16 76532495 76532495 G T CNTNAP4 Nonsense_Mutation p.E684* 0.15 TCGA-F5-6814-01 16 76532538 76532538 G A CNTNAP4 Missense_Mutation p.R698Q 0.26 deleterious(0.04) benign(0.271) TCGA-F5-6814-01 16 76592460 76592460 G A CNTNAP4 Silent p.R1196R 0.29 TCGA-F5-6814-01 16 77354989 77354989 C A ADAMTS18 Missense_Mutation p.Q758H 0.42 tolerated(0.25) benign(0.032) TCGA-F5-6814-01 16 77401349 77401349 C T ADAMTS18 Missense_Mutation p.R256Q 0.19 deleterious(0.03) benign(0.087) TCGA-F5-6814-01 16 77401405 77401405 C T ADAMTS18 Silent p.Q237Q 0.09 TCGA-F5-6814-01 16 775989 775989 G A CCDC78 Missense_Mutation p.L53F 0.28 tolerated(0.17) possibly_damaging(0.788) TCGA-F5-6814-01 16 7760796 7760796 C T RBFOX1 3'UTR 0.41 TCGA-F5-6814-01 16 77769743 77769743 G T NUDT7 Nonsense_Mutation p.E70* 0.43 TCGA-F5-6814-01 16 784310 784310 G T NARFL Missense_Mutation p.F204L 0.45 tolerated(0.17) benign(0.013) TCGA-F5-6814-01 16 79634484 79634484 C A MAF 5'UTR 0.18 TCGA-F5-6814-01 16 81095264 81095264 C A C16orf46 Missense_Mutation p.K230N 0.46 deleterious(0.02) possibly_damaging(0.783) TCGA-F5-6814-01 16 81097421 81097421 A C C16orf46 Missense_Mutation p.V47G 0.13 deleterious(0) benign(0.126) TCGA-F5-6814-01 16 81209291 81209291 C T PKD1L2 Silent p.E90E 0.24 TCGA-F5-6814-01 16 81232467 81232467 T C PKD1L2 Missense_Mutation p.E448G 0.13 deleterious(0) probably_damaging(0.946) TCGA-F5-6814-01 16 81385245 81385245 T C GAN Silent p.L75L 0.43 TCGA-F5-6814-01 16 81396123 81396123 C T GAN Silent p.F331F 0.39 TCGA-F5-6814-01 16 81991708 81991708 C A PLCG2 3'UTR 0.27 TCGA-F5-6814-01 16 81991744 81991744 G T PLCG2 3'UTR 0.16 TCGA-F5-6814-01 16 83813721 83813721 T G CDH13 Missense_Mutation p.D657E 0.45 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 16 839322 839322 G A CHTF18 Silent p.P133P 0.29 TCGA-F5-6814-01 16 83941806 83941806 C A MLYCD Missense_Mutation p.F239L 0.31 tolerated(0.3) benign(0.012) TCGA-F5-6814-01 16 84203932 84203932 C T DNAAF1 Missense_Mutation p.P500S 0.40 tolerated(0.71) benign(0.067) TCGA-F5-6814-01 16 84497366 84497366 A G ATP2C2 3'UTR 0.34 TCGA-F5-6814-01 16 84767056 84767056 T G USP10 Missense_Mutation p.F13V 0.32 deleterious_low_confidence(0) possibly_damaging(0.495) TCGA-F5-6814-01 16 847875 847875 G A CHTF18 Missense_Mutation p.R943H 0.14 tolerated(0.25) benign(0.007) TCGA-F5-6814-01 16 84808796 84808796 A C USP10 Missense_Mutation p.N725T 0.12 tolerated(0.4) benign(0.005) TCGA-F5-6814-01 16 86612512 86612512 G A FOXL1 Silent p.A61A 0.30 TCGA-F5-6814-01 16 86614038 86614038 C A FOXL1 3'UTR 0.13 TCGA-F5-6814-01 16 86614080 86614080 C A FOXL1 3'UTR 0.36 TCGA-F5-6814-01 16 86614120 86614120 A C FOXL1 3'UTR 0.18 TCGA-F5-6814-01 16 86614660 86614660 G T FOXL1 3'UTR 0.22 TCGA-F5-6814-01 16 87369030 87369030 C T FBXO31 Silent p.P292P 0.27 TCGA-F5-6814-01 16 87466763 87466763 T G ZCCHC14 Missense_Mutation p.N110H 0.27 deleterious(0.04) possibly_damaging(0.825) TCGA-F5-6814-01 16 87799428 87799428 C A KLHDC4 Missense_Mutation p.K23N 0.44 deleterious(0) unknown(0) TCGA-F5-6814-01 16 87874064 87874064 G A SLC7A5 Silent p.F262F 0.30 TCGA-F5-6814-01 16 87936097 87936097 T G CA5A Missense_Mutation p.K163N 0.10 deleterious(0.02) benign(0.095) TCGA-F5-6814-01 16 88495925 88495925 C A ZNF469 Missense_Mutation p.Q683K 0.22 benign(0) TCGA-F5-6814-01 16 88505744 88505744 C A ZNF469 3'UTR 0.30 TCGA-F5-6814-01 16 88688710 88688710 G T ZC3H18 Missense_Mutation p.K527N 0.38 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 16 88925126 88925126 G A TRAPPC2L Missense_Mutation p.A45T 0.45 tolerated(0.59) benign(0.013) TCGA-F5-6814-01 16 8905029 8905029 C T PMM2 Silent p.L147L 0.33 TCGA-F5-6814-01 16 89167684 89167684 A G ACSF3 Missense_Mutation p.I199V 0.35 deleterious(0.01) possibly_damaging(0.558) TCGA-F5-6814-01 16 89178506 89178506 G A ACSF3 Missense_Mutation p.E277K 0.10 tolerated(0.37) benign(0.1) TCGA-F5-6814-01 16 89293247 89293247 T G ZNF778 Missense_Mutation p.I156S 0.15 tolerated(0.47) possibly_damaging(0.715) TCGA-F5-6814-01 16 89348768 89348768 C A ANKRD11 Missense_Mutation p.K1394N 0.16 probably_damaging(0.972) TCGA-F5-6814-01 16 89851304 89851304 G T FANCA Missense_Mutation p.F476L 0.18 deleterious(0) benign(0.153) TCGA-F5-6814-01 16 89986731 89986731 C A MC1R 3'UTR 0.15 TCGA-F5-6814-01 16 90038139 90038139 G T CENPBD1 Silent p.I64I 0.39 TCGA-F5-6814-01 16 90075814 90075814 G A DBNDD1 Missense_Mutation p.P39L 0.50 tolerated_low_confidence(0.07) benign(0.086) TCGA-F5-6814-01 16 9928051 9928051 A G GRIN2A Missense_Mutation p.V563A 0.21 deleterious(0.02) possibly_damaging(0.747) TCGA-F5-6814-01 16 9934870 9934870 T C GRIN2A Missense_Mutation p.T474A 0.10 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 17 10223478 10223478 C A MYH13 Nonsense_Mutation p.E1114* 0.19 TCGA-F5-6814-01 17 10223679 10223679 C A MYH13 Missense_Mutation p.E1082D 0.30 deleterious(0.05) benign(0.017) TCGA-F5-6814-01 17 10224965 10224965 C A MYH13 Nonsense_Mutation p.E999* 0.66 TCGA-F5-6814-01 17 10261053 10261053 A C MYH13 Missense_Mutation p.F246C 0.79 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 10265438 10265438 T C MYH13 Missense_Mutation p.T168A 0.26 tolerated(0.14) probably_damaging(0.943) TCGA-F5-6814-01 17 10298591 10298591 C A MYH8 Missense_Mutation p.E1607D 0.23 deleterious(0.01) probably_damaging(0.963) TCGA-F5-6814-01 17 10314223 10314223 C T MYH8 Silent p.E486E 0.62 TCGA-F5-6814-01 17 10318882 10318882 G T MYH8 Silent p.A185A 0.29 TCGA-F5-6814-01 17 10322312 10322312 C A MYH8 Missense_Mutation p.M82I 0.68 deleterious(0.01) benign(0.006) TCGA-F5-6814-01 17 10357088 10357088 T C MYH4 Missense_Mutation p.I936V 0.07 tolerated(0.14) benign(0.041) TCGA-F5-6814-01 17 10358124 10358124 C A MYH4 Missense_Mutation p.E813D 0.16 tolerated(1) benign(0.002) TCGA-F5-6814-01 17 10362582 10362582 C T MYH4 Missense_Mutation p.E525K 0.09 deleterious(0.03) possibly_damaging(0.559) TCGA-F5-6814-01 17 10400465 10400465 C T MYH1 Missense_Mutation p.R1526H 0.74 tolerated(0.19) benign(0.002) TCGA-F5-6814-01 17 10415854 10415854 C A MYH1 Nonsense_Mutation p.E340* 0.34 TCGA-F5-6814-01 17 10426921 10426921 C A MYH2 Missense_Mutation p.M1788I 0.17 tolerated(0.06) possibly_damaging(0.619) TCGA-F5-6814-01 17 10427944 10427944 C T MYH2 Missense_Mutation p.D1672N 0.88 deleterious(0.03) possibly_damaging(0.898) TCGA-F5-6814-01 17 10433254 10433254 C A MYH2 Missense_Mutation p.K945N 0.36 deleterious(0.02) benign(0.367) TCGA-F5-6814-01 17 10446214 10446214 C T MYH2 Silent p.S294S 0.60 TCGA-F5-6814-01 17 10447242 10447242 C A MYH2 Nonsense_Mutation p.E209* 0.37 TCGA-F5-6814-01 17 10546157 10546157 C T MYH3 Missense_Mutation p.E523K 0.11 deleterious(0.03) benign(0.44) TCGA-F5-6814-01 17 10549103 10549103 C T MYH3 Silent p.T354T 0.10 TCGA-F5-6814-01 17 11806119 11806119 C T DNAH9 Silent p.S3830S 0.76 TCGA-F5-6814-01 17 11895949 11895949 A G ZNF18 Silent p.C66C 0.76 TCGA-F5-6814-01 17 12043169 12043169 G T MAP2K4 Nonsense_Mutation p.E352* 0.68 TCGA-F5-6814-01 17 12893488 12893488 A C ARHGAP44 Nonstop_Mutation p.*819Cext*50 0.20 TCGA-F5-6814-01 17 12898100 12898100 G A ELAC2 Silent p.C670C 0.19 TCGA-F5-6814-01 17 12901760 12901760 G A ELAC2 Nonsense_Mutation p.R497* 0.12 TCGA-F5-6814-01 17 13399937 13399937 G A HS3ST3A1 Silent p.F266F 0.49 TCGA-F5-6814-01 17 14140071 14140071 C T CDRT15 Missense_Mutation p.R27Q 0.24 tolerated_low_confidence(0.09) benign(0.045) TCGA-F5-6814-01 17 14248387 14248387 G T HS3ST3B1 Missense_Mutation p.E199D 0.09 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 17 15207180 15207180 C T TEKT3 3'UTR 0.36 TCGA-F5-6814-01 17 15207292 15207292 C A TEKT3 Missense_Mutation p.K478N 0.10 deleterious(0.03) benign(0.108) TCGA-F5-6814-01 17 15207422 15207422 T C TEKT3 Missense_Mutation p.Q435R 0.31 tolerated(0.28) benign(0.044) TCGA-F5-6814-01 17 15234553 15234553 G A TEKT3 Missense_Mutation p.S117L 0.79 deleterious(0) benign(0.15) TCGA-F5-6814-01 17 15517312 15517312 C T RP11-385D13.1 Missense_Mutation p.E546K 0.67 tolerated_low_confidence(0.16) benign(0.02) TCGA-F5-6814-01 17 1587873 1587873 G T PRPF8 5'UTR 0.29 TCGA-F5-6814-01 17 15905286 15905286 C T TTC19 Missense_Mutation p.R124C 0.61 tolerated(0.11) possibly_damaging(0.696) TCGA-F5-6814-01 17 16004838 16004838 C A NCOR1 Nonsense_Mutation p.E806* 0.13 TCGA-F5-6814-01 17 16012175 16012175 C T NCOR1 Missense_Mutation p.A703T 0.78 probably_damaging(0.937) TCGA-F5-6814-01 17 16056681 16056681 A C NCOR1 Missense_Mutation p.F254C 0.06 possibly_damaging(0.827) TCGA-F5-6814-01 17 16285892 16285892 G A UBB Missense_Mutation p.R224H 0.14 deleterious(0.04) benign(0.043) TCGA-F5-6814-01 17 16467061 16467061 A C ZNF287 Missense_Mutation p.L194V 0.09 tolerated(0.06) probably_damaging(0.99) TCGA-F5-6814-01 17 16525743 16525743 A C ZNF624 Silent p.T819T 0.10 TCGA-F5-6814-01 17 16638388 16638388 G T CCDC144A Missense_Mutation p.D935Y 0.30 deleterious(0) possibly_damaging(0.551) TCGA-F5-6814-01 17 16665751 16665751 C T CCDC144A Missense_Mutation p.S1264L 0.34 tolerated(0.27) benign(0.134) TCGA-F5-6814-01 17 16721398 16721398 C T AC022596.6 RNA 0.78 TCGA-F5-6814-01 17 16842869 16842869 C A TNFRSF13B Missense_Mutation p.G292C 0.26 deleterious(0.05) benign(0.046) TCGA-F5-6814-01 17 17409155 17409155 T G PEMT Missense_Mutation p.T221P 0.18 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 17 1795132 1795132 T C RPA1 Silent p.N519N 0.24 TCGA-F5-6814-01 17 18036691 18036691 G T MYO15A Missense_Mutation p.E1491D 0.14 unknown(0) TCGA-F5-6814-01 17 18042907 18042907 C A MYO15A Missense_Mutation p.F1731L 0.50 unknown(0) TCGA-F5-6814-01 17 18057121 18057121 G A MYO15A Missense_Mutation p.E2667K 0.24 unknown(0) TCGA-F5-6814-01 17 18198077 18198077 C T TOP3A Missense_Mutation p.R338Q 0.24 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 17 18220537 18220537 G T SMCR8 Missense_Mutation p.E478D 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-F5-6814-01 17 18397825 18397825 T G LGALS9C 3'UTR 0.14 TCGA-F5-6814-01 17 18417909 18417909 G A CTD-2303H24.2 RNA 0.60 TCGA-F5-6814-01 17 18418912 18418912 C A CTD-2303H24.2 RNA 0.09 TCGA-F5-6814-01 17 18566028 18566028 C A ZNF286B Missense_Mutation p.R264I 0.69 deleterious(0) possibly_damaging(0.643) TCGA-F5-6814-01 17 18927648 18927648 C T GRAP Silent p.G116G 0.42 TCGA-F5-6814-01 17 19237372 19237372 A G EPN2 Silent p.T577T 0.17 TCGA-F5-6814-01 17 19720118 19720118 G T ULK2 Missense_Mutation p.S347Y 0.34 deleterious(0.01) benign(0.033) TCGA-F5-6814-01 17 19750062 19750062 G A ULK2 Missense_Mutation p.R153C 0.26 tolerated(0.28) benign(0.022) TCGA-F5-6814-01 17 20107903 20107903 G T SPECC1 Missense_Mutation p.D181Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 20130775 20130775 A C SPECC1 Missense_Mutation p.E638A 0.37 tolerated(0.11) probably_damaging(0.998) TCGA-F5-6814-01 17 21101697 21101697 C T TMEM11 Silent p.T173T 0.22 TCGA-F5-6814-01 17 21101783 21101783 G A TMEM11 Missense_Mutation p.R145C 0.41 deleterious(0) probably_damaging(0.931) TCGA-F5-6814-01 17 21731307 21731307 G T UBBP4 Intron 0.10 TCGA-F5-6814-01 17 21826233 21826233 G A FAM27L RNA 0.29 TCGA-F5-6814-01 17 2203534 2203534 C A SMG6 Missense_Mutation p.Q171H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.707) TCGA-F5-6814-01 17 2228070 2228070 T G TSR1 Missense_Mutation p.M692L 0.14 tolerated(0.41) benign(0.002) TCGA-F5-6814-01 17 2576021 2576021 A C PAFAH1B1 Missense_Mutation p.K214T 0.74 tolerated(0.11) benign(0.401) TCGA-F5-6814-01 17 263136 263136 G A C17orf97 Missense_Mutation p.E168K 0.48 deleterious_low_confidence(0.02) probably_damaging(0.956) TCGA-F5-6814-01 17 26488271 26488271 T A NLK Missense_Mutation p.F244I 0.44 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 17 26655640 26655640 T G IFT20 3'UTR 0.36 TCGA-F5-6814-01 17 26684860 26684860 C A TMEM199 Missense_Mutation p.S56Y 0.30 deleterious(0) possibly_damaging(0.629) TCGA-F5-6814-01 17 26688257 26688257 G A TMEM199 Missense_Mutation p.E204K 0.22 tolerated(0.08) benign(0.426) TCGA-F5-6814-01 17 26696553 26696553 C A VTN Missense_Mutation p.K168N 0.67 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 26904766 26904766 A C SPAG5 Missense_Mutation p.V1178G 0.08 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 26940597 26940597 T C RP11-192H23.4 Missense_Mutation p.H62R 0.43 tolerated_low_confidence(0.42) benign(0.025) TCGA-F5-6814-01 17 27041899 27041899 G T RAB34 Missense_Mutation p.F265L 0.42 tolerated(0.23) possibly_damaging(0.517) TCGA-F5-6814-01 17 27051804 27051804 C A TLCD1 Missense_Mutation p.M156I 0.14 tolerated(0.14) benign(0.021) TCGA-F5-6814-01 17 27237240 27237240 G A PHF12 Intron 0.17 TCGA-F5-6814-01 17 27237348 27237348 A C PHF12 Missense_Mutation p.F752C 0.11 deleterious(0) possibly_damaging(0.818) TCGA-F5-6814-01 17 27244400 27244400 G A PHF12 Missense_Mutation p.S346L 0.29 deleterious(0.05) benign(0.014) TCGA-F5-6814-01 17 27493775 27493775 T G MYO18A Missense_Mutation p.I62L 0.47 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-F5-6814-01 17 27870086 27870086 G T TAOK1 3'UTR 0.26 TCGA-F5-6814-01 17 27898903 27898903 C T TP53I13 Missense_Mutation p.A114V 0.22 tolerated(0.31) benign(0.053) TCGA-F5-6814-01 17 27957724 27957724 A C SSH2 3'UTR 0.47 TCGA-F5-6814-01 17 27957935 27957935 C A SSH2 Missense_Mutation p.R1399I 0.18 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 27963798 27963798 A G SSH2 Missense_Mutation p.W457R 0.09 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 28378220 28378220 C T EFCAB5 Nonsense_Mutation p.R429* 0.20 TCGA-F5-6814-01 17 28384786 28384786 G T EFCAB5 Missense_Mutation p.V820L 0.25 deleterious(0.03) possibly_damaging(0.875) TCGA-F5-6814-01 17 28409946 28409946 T C EFCAB5 Missense_Mutation p.V1155A 0.15 deleterious(0) possibly_damaging(0.886) TCGA-F5-6814-01 17 28434916 28434916 A G EFCAB5 Missense_Mutation p.I1462M 0.48 tolerated(0.09) benign(0.028) TCGA-F5-6814-01 17 28505127 28505127 T G NSRP1 Silent p.A70A 0.08 TCGA-F5-6814-01 17 28511782 28511782 C T NSRP1 Missense_Mutation p.A256V 0.20 deleterious(0.01) benign(0.034) TCGA-F5-6814-01 17 28576142 28576142 C T BLMH Missense_Mutation p.E421K 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 28750712 28750712 G A CPD Missense_Mutation p.E616K 0.17 tolerated(0.19) benign(0.196) TCGA-F5-6814-01 17 28776696 28776696 G A CPD Missense_Mutation p.G1000E 0.46 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 17 29622707 29622707 A C OMG Missense_Mutation p.F215V 0.10 tolerated(0.59) benign(0.001) TCGA-F5-6814-01 17 29652897 29652897 A C NF1 Missense_Mutation p.K1632T 0.14 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 17 29670064 29670064 T A NF1 Missense_Mutation p.L2367Q 0.49 deleterious(0) probably_damaging(0.916) TCGA-F5-6814-01 17 29857467 29857467 G A RAB11FIP4 Missense_Mutation p.D593N 0.09 tolerated(0.33) probably_damaging(0.947) TCGA-F5-6814-01 17 30226685 30226685 C A UTP6 Missense_Mutation p.D53Y 0.44 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 30267481 30267481 G A SUZ12 Missense_Mutation p.R121Q 0.28 deleterious(0.01) possibly_damaging(0.56) TCGA-F5-6814-01 17 3030082 3030082 G T OR1G1 Missense_Mutation p.S255Y 0.80 tolerated(0.82) probably_damaging(0.925) TCGA-F5-6814-01 17 30503214 30503214 G T RHOT1 Missense_Mutation p.R104I 0.33 tolerated(0.19) benign(0.01) TCGA-F5-6814-01 17 30529909 30529909 G T RHOT1 Missense_Mutation p.R441I 0.17 deleterious(0.01) benign(0.132) TCGA-F5-6814-01 17 30536474 30536474 T G RHOT1 Intron 0.23 TCGA-F5-6814-01 17 30536538 30536538 C A RHOT1 Intron 0.39 TCGA-F5-6814-01 17 30815714 30815714 G T CDK5R1 3'UTR 0.27 TCGA-F5-6814-01 17 30816988 30816988 C T CDK5R1 3'UTR 0.15 TCGA-F5-6814-01 17 30817001 30817001 G A CDK5R1 3'UTR 0.42 TCGA-F5-6814-01 17 3101180 3101180 C T OR1A2 Missense_Mutation p.A123V 0.74 deleterious(0.03) benign(0.12) TCGA-F5-6814-01 17 31267908 31267908 C A TMEM98 Missense_Mutation p.A193D 0.11 deleterious(0.01) possibly_damaging(0.665) TCGA-F5-6814-01 17 31322445 31322445 T C SPACA3 Missense_Mutation p.V18A 0.22 tolerated_low_confidence(0.07) benign(0.153) TCGA-F5-6814-01 17 32598923 32598923 C A CCL7 3'UTR 0.46 TCGA-F5-6814-01 17 32687479 32687479 C T CCL1 3'UTR 0.33 TCGA-F5-6814-01 17 32957035 32957035 G T TMEM132E Missense_Mutation p.E359D 0.38 deleterious(0.02) possibly_damaging(0.855) TCGA-F5-6814-01 17 3301046 3301046 C A OR1E1 Missense_Mutation p.R220I 0.31 deleterious(0.02) possibly_damaging(0.515) TCGA-F5-6814-01 17 33255988 33255988 G T CCT6B Missense_Mutation p.H506N 0.37 tolerated(0.4) benign(0.017) TCGA-F5-6814-01 17 33267633 33267633 T C CCT6B Missense_Mutation p.D298G 0.32 deleterious(0.03) possibly_damaging(0.708) TCGA-F5-6814-01 17 33269620 33269620 T G CCT6B Missense_Mutation p.K256N 0.43 deleterious(0) benign(0.356) TCGA-F5-6814-01 17 33289212 33289212 C A ZNF830 Missense_Mutation p.F209L 0.36 deleterious(0.02) benign(0.08) TCGA-F5-6814-01 17 33290154 33290154 T G ZNF830 3'UTR 0.07 TCGA-F5-6814-01 17 33466894 33466894 A C NLE1 Missense_Mutation p.I118M 0.33 deleterious(0) possibly_damaging(0.898) TCGA-F5-6814-01 17 33495110 33495110 G T UNC45B Missense_Mutation p.K394N 0.21 tolerated(0.07) possibly_damaging(0.588) TCGA-F5-6814-01 17 33520432 33520432 A C SLC35G3 Missense_Mutation p.Y299D 0.32 tolerated(0.08) benign(0.309) TCGA-F5-6814-01 17 33680076 33680076 C T SLFN11 Missense_Mutation p.E669K 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 33687293 33687293 A G SLFN11 Silent p.H389H 0.18 TCGA-F5-6814-01 17 3372612 3372612 C T SPATA22 Missense_Mutation p.R3Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 33749388 33749388 C A SLFN12 Missense_Mutation p.E220D 0.35 tolerated(0.32) benign(0.107) TCGA-F5-6814-01 17 33768132 33768132 C A SLFN13 Nonsense_Mutation p.E726* 0.37 TCGA-F5-6814-01 17 33768339 33768339 C A SLFN13 Nonsense_Mutation p.E657* 0.37 TCGA-F5-6814-01 17 33772348 33772348 G T SLFN13 Missense_Mutation p.L118I 0.45 tolerated(0.13) benign(0.03) TCGA-F5-6814-01 17 33806824 33806824 C T SLFN12L Silent p.P135P 0.26 TCGA-F5-6814-01 17 33849929 33849929 T G SLFN12L 5'UTR 0.45 TCGA-F5-6814-01 17 33884702 33884702 C T SLFN14 Missense_Mutation p.R127H 0.32 tolerated(0.2) benign(0.007) TCGA-F5-6814-01 17 3402365 3402365 C T ASPA Missense_Mutation p.R309C 0.24 deleterious(0.03) benign(0.002) TCGA-F5-6814-01 17 34068087 34068087 C T RASL10B Silent p.I125I 0.31 TCGA-F5-6814-01 17 34305207 34305207 C T CCL16 Missense_Mutation p.A57T 0.35 tolerated(0.25) probably_damaging(0.996) TCGA-F5-6814-01 17 34312815 34312815 C T CCL14 Silent p.P32P 0.26 TCGA-F5-6814-01 17 34313680 34313680 C A CCL14 Missense_Mutation p.K2N 0.31 deleterious(0) probably_damaging(0.964) TCGA-F5-6814-01 17 34892948 34892948 A C PIGW 5'UTR 0.10 TCGA-F5-6814-01 17 34937895 34937895 G A GGNBP2 Missense_Mutation p.R381Q 0.38 deleterious(0.01) benign(0.199) TCGA-F5-6814-01 17 35297683 35297683 C A LHX1 Missense_Mutation p.F89L 0.32 tolerated(0.07) possibly_damaging(0.474) TCGA-F5-6814-01 17 35310193 35310193 A C AATF Missense_Mutation p.E97D 0.39 tolerated(0.24) benign(0.004) TCGA-F5-6814-01 17 35549106 35549106 C G ACACA Silent p.V1447V 0.25 TCGA-F5-6814-01 17 35598928 35598928 C A ACACA Silent p.R991R 0.36 TCGA-F5-6814-01 17 35609915 35609915 C T ACACA Missense_Mutation p.R625Q 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-F5-6814-01 17 35825622 35825622 A G TADA2A Missense_Mutation p.D267G 0.17 deleterious(0.02) possibly_damaging(0.884) TCGA-F5-6814-01 17 35837187 35837187 C T TADA2A 3'UTR 0.29 TCGA-F5-6814-01 17 35898430 35898430 T A SYNRG Missense_Mutation p.L1171F 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 17 3595051 3595051 C T P2RX5 Missense_Mutation p.D59N 0.75 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 17 36047354 36047354 G A HNF1B 3'UTR 0.43 TCGA-F5-6814-01 17 36483658 36483658 C A GPR179 Nonsense_Mutation p.E1932* 0.37 TCGA-F5-6814-01 17 36483782 36483782 C A GPR179 Missense_Mutation p.K1890N 0.40 tolerated(0.05) benign(0.164) TCGA-F5-6814-01 17 36485119 36485119 C T GPR179 Missense_Mutation p.A1445T 0.25 tolerated(0.27) benign(0.005) TCGA-F5-6814-01 17 36485198 36485198 C A GPR179 Missense_Mutation p.Q1418H 0.28 tolerated(0.08) possibly_damaging(0.907) TCGA-F5-6814-01 17 36493089 36493089 C T GPR179 Silent p.E333E 0.27 TCGA-F5-6814-01 17 36708268 36708268 C T SRCIN1 Missense_Mutation p.E861K 0.35 deleterious(0.02) benign(0.046) TCGA-F5-6814-01 17 36709082 36709082 C A SRCIN1 Missense_Mutation p.E737D 0.20 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 17 36940575 36940575 C T PIP4K2B Missense_Mutation p.R92H 0.42 tolerated(1) benign(0.002) TCGA-F5-6814-01 17 37094858 37094858 A G FBXO47 Missense_Mutation p.V404A 0.35 deleterious(0.03) benign(0.001) TCGA-F5-6814-01 17 37101317 37101317 C T FBXO47 Missense_Mutation p.R230Q 0.32 tolerated(0.96) benign(0.001) TCGA-F5-6814-01 17 37107885 37107885 C T FBXO47 Missense_Mutation p.E189K 0.38 tolerated(0.06) benign(0.037) TCGA-F5-6814-01 17 37119192 37119192 C A FBXO47 Missense_Mutation p.K29N 0.38 tolerated(1) benign(0) TCGA-F5-6814-01 17 37119252 37119252 G T FBXO47 Missense_Mutation p.F9L 0.24 deleterious_low_confidence(0.03) benign(0.004) TCGA-F5-6814-01 17 37224115 37224115 A C PLXDC1 Missense_Mutation p.F494C 0.30 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 37224166 37224166 T G PLXDC1 Missense_Mutation p.D477A 0.39 deleterious(0.05) benign(0.013) TCGA-F5-6814-01 17 37226179 37226179 G A PLXDC1 Missense_Mutation p.A438V 0.41 tolerated(0.15) probably_damaging(0.998) TCGA-F5-6814-01 17 37441802 37441802 G T FBXL20 Missense_Mutation p.F141L 0.32 tolerated(0.49) benign(0.041) TCGA-F5-6814-01 17 37564254 37564254 T G MED1 Missense_Mutation p.K1407T 0.14 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 17 37584016 37584016 A G MED1 Missense_Mutation p.V226A 0.60 tolerated(0.19) benign(0.237) TCGA-F5-6814-01 17 37590567 37590567 T G MED1 Missense_Mutation p.K145N 0.30 tolerated(0.18) probably_damaging(0.959) TCGA-F5-6814-01 17 37627206 37627206 G A CDK12 Missense_Mutation p.R374K 0.36 unknown(0) TCGA-F5-6814-01 17 37627509 37627509 C A CDK12 Missense_Mutation p.S475Y 0.31 benign(0.272) TCGA-F5-6814-01 17 37657594 37657594 G T CDK12 Missense_Mutation p.K837N 0.28 probably_damaging(0.999) TCGA-F5-6814-01 17 37667784 37667784 G A CDK12 Missense_Mutation p.R890H 0.27 probably_damaging(0.999) TCGA-F5-6814-01 17 3779702 3779702 T G CAMKK1 Missense_Mutation p.I309L 0.82 deleterious(0) benign(0.044) TCGA-F5-6814-01 17 38172050 38172050 G A CSF3 Silent p.E49E 0.31 TCGA-F5-6814-01 17 38209762 38209762 G T MED24 Missense_Mutation p.F30L 0.34 tolerated(0.45) benign(0.001) TCGA-F5-6814-01 17 38323853 38323853 T G CASC3 Missense_Mutation p.Y547D 0.29 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 17 38545887 38545887 C A TOP2A Nonsense_Mutation p.E1494* 0.41 TCGA-F5-6814-01 17 38556217 38556217 C A TOP2A Nonsense_Mutation p.E1035* 0.39 TCGA-F5-6814-01 17 38859542 38859542 A G KRT24 Missense_Mutation p.L135P 0.12 deleterious(0.01) unknown(0) TCGA-F5-6814-01 17 38904446 38904446 G T KRT25 3'UTR 0.41 TCGA-F5-6814-01 17 38911420 38911420 G T KRT25 Missense_Mutation p.S35Y 0.32 deleterious(0.03) benign(0.037) TCGA-F5-6814-01 17 38936060 38936060 G A KRT27 Silent p.N246N 0.13 TCGA-F5-6814-01 17 38936593 38936593 G T KRT27 Missense_Mutation p.L215I 0.31 deleterious(0) probably_damaging(0.955) TCGA-F5-6814-01 17 38976319 38976319 T G KRT10 Silent p.L379L 0.18 TCGA-F5-6814-01 17 39019842 39019842 C A KRT12 Missense_Mutation p.E330D 0.13 deleterious(0.01) probably_damaging(0.959) TCGA-F5-6814-01 17 39137291 39137291 G A KRT40 Missense_Mutation p.T267M 0.30 deleterious(0.04) benign(0.04) TCGA-F5-6814-01 17 39190504 39190504 G T KRTAP1-3 3'UTR 0.38 TCGA-F5-6814-01 17 39241009 39241009 G T KRTAP4-7 3'UTR 0.43 TCGA-F5-6814-01 17 39241394 39241394 G T KRTAP4-7 3'UTR 0.41 TCGA-F5-6814-01 17 39262371 39262371 T C KRTAP4-9 3'UTR 0.31 TCGA-F5-6814-01 17 39262525 39262525 G T KRTAP4-9 3'UTR 0.35 TCGA-F5-6814-01 17 39323729 39323729 G A KRTAP4-3 3'UTR 0.15 TCGA-F5-6814-01 17 39340582 39340582 T G KRTAP4-1 3'UTR 0.33 TCGA-F5-6814-01 17 39341321 39341321 T G KRTAP4-1 5'UTR 0.27 TCGA-F5-6814-01 17 39406893 39406893 T C KRTAP9-4 3'UTR 0.41 TCGA-F5-6814-01 17 39521456 39521456 C T KRT33B Missense_Mutation p.E283K 0.28 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 17 39579111 39579111 C T KRT37 Silent p.A217A 0.50 TCGA-F5-6814-01 17 39597118 39597118 C T KRT38 Missense_Mutation p.G19E 0.41 tolerated(0.09) benign(0.003) TCGA-F5-6814-01 17 39645824 39645824 T G KRT36 Missense_Mutation p.Q98P 0.30 deleterious(0) possibly_damaging(0.761) TCGA-F5-6814-01 17 39725698 39725698 C T KRT9 Missense_Mutation p.E342K 0.37 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 17 39726211 39726211 C T KRT9 Missense_Mutation p.R261Q 0.25 deleterious(0.04) benign(0.298) TCGA-F5-6814-01 17 39738713 39738713 C T KRT14 Missense_Mutation p.E465K 0.24 tolerated(0.09) possibly_damaging(0.791) TCGA-F5-6814-01 17 39740021 39740021 G T KRT14 Missense_Mutation p.F306L 0.43 deleterious(0) possibly_damaging(0.861) TCGA-F5-6814-01 17 39846169 39846169 G T EIF1 Missense_Mutation p.K57N 0.13 tolerated(0.1) benign(0.107) TCGA-F5-6814-01 17 39880950 39880950 T G HAP1 3'UTR 0.44 TCGA-F5-6814-01 17 39928040 39928040 C T JUP Missense_Mutation p.D23N 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 39998528 39998528 A C KLHL10 Missense_Mutation p.Q216H 0.27 deleterious(0.04) benign(0.039) TCGA-F5-6814-01 17 40034398 40034398 C T ACLY Silent p.E815E 0.25 TCGA-F5-6814-01 17 40061813 40061813 G T ACLY Missense_Mutation p.T322N 0.11 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 17 40117358 40117358 G T CNP 5'Flank 0.08 TCGA-F5-6814-01 17 40120462 40120462 A C CNP Missense_Mutation p.E127A 0.17 tolerated(0.1) possibly_damaging(0.674) TCGA-F5-6814-01 17 40141476 40141476 G A DNAJC7 Silent p.F233F 0.14 TCGA-F5-6814-01 17 40149143 40149143 C T DNAJC7 Missense_Mutation p.S94N 0.29 tolerated(0.5) benign(0.002) TCGA-F5-6814-01 17 40316176 40316176 C T KCNH4 Missense_Mutation p.R699H 0.19 deleterious(0.01) possibly_damaging(0.861) TCGA-F5-6814-01 17 40321513 40321513 G A KCNH4 Silent p.S524S 0.37 TCGA-F5-6814-01 17 4053287 4053287 A C CYB5D2 Missense_Mutation p.N118T 0.15 tolerated(0.2) benign(0.014) TCGA-F5-6814-01 17 40725064 40725064 G T MLX 3'UTR 0.30 TCGA-F5-6814-01 17 40738153 40738153 G T FAM134C Missense_Mutation p.F169L 0.19 deleterious(0) probably_damaging(0.917) TCGA-F5-6814-01 17 40831735 40831735 G T CCR10 Missense_Mutation p.L309I 0.21 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 40991350 40991350 G T PSME3 Nonsense_Mutation p.E226* 0.42 TCGA-F5-6814-01 17 41245834 41245834 C A BRCA1 Nonsense_Mutation p.E572* 0.29 TCGA-F5-6814-01 17 41975627 41975627 T C MPP2 Intron 0.37 TCGA-F5-6814-01 17 42113541 42113541 G A LSM12 3'UTR 0.26 TCGA-F5-6814-01 17 42273437 42273437 G A ATXN7L3 Missense_Mutation p.S170F 0.33 deleterious(0.01) possibly_damaging(0.807) TCGA-F5-6814-01 17 42335946 42335946 G T SLC4A1 Missense_Mutation p.L308M 0.35 deleterious(0) benign(0.314) TCGA-F5-6814-01 17 42433827 42433827 G A FAM171A2 Missense_Mutation p.A190V 0.16 tolerated(0.06) benign(0.192) TCGA-F5-6814-01 17 42478325 42478325 A C GPATCH8 Missense_Mutation p.L374V 0.39 tolerated(0.08) probably_damaging(0.929) TCGA-F5-6814-01 17 42478805 42478805 G A GPATCH8 Missense_Mutation p.P214S 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 42483332 42483332 G A GPATCH8 Missense_Mutation p.R194W 0.23 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 17 42742791 42742791 C T C17orf104 Silent p.D133D 0.10 TCGA-F5-6814-01 17 42744140 42744140 C A C17orf104 Silent p.I287I 0.48 TCGA-F5-6814-01 17 42744177 42744177 C A C17orf104 Missense_Mutation p.L300I 0.50 tolerated(0.56) benign(0.1) TCGA-F5-6814-01 17 42756369 42756369 C T CCDC43 Missense_Mutation p.R177Q 0.35 tolerated(0.41) benign(0.016) TCGA-F5-6814-01 17 43174542 43174542 C T NMT1 Nonsense_Mutation p.R215* 0.60 TCGA-F5-6814-01 17 43228358 43228358 T G HEXIM1 3'UTR 0.46 TCGA-F5-6814-01 17 43228397 43228397 A C HEXIM1 3'UTR 0.43 TCGA-F5-6814-01 17 43229097 43229097 A C HEXIM1 3'UTR 0.12 TCGA-F5-6814-01 17 43552719 43552719 A C PLEKHM1 Missense_Mutation p.S224A 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-F5-6814-01 17 4356439 4356439 C T SPNS3 Missense_Mutation p.A351V 0.23 tolerated(0.13) benign(0.016) TCGA-F5-6814-01 17 43923610 43923610 C T SPPL2C Silent p.F446F 0.25 TCGA-F5-6814-01 17 44064408 44064408 C T MAPT Missense_Mutation p.R377C 0.11 deleterious(0) probably_damaging(0.927) TCGA-F5-6814-01 17 44087703 44087703 C A MAPT Missense_Mutation p.L619I 0.28 deleterious(0) probably_damaging(0.916) TCGA-F5-6814-01 17 44108923 44108923 C T KANSL1 Silent p.A1079A 0.31 TCGA-F5-6814-01 17 44111533 44111533 G A KANSL1 Missense_Mutation p.T887M 0.28 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 17 44116022 44116022 G A KANSL1 Missense_Mutation p.S808L 0.11 tolerated(0.08) benign(0.207) TCGA-F5-6814-01 17 44127978 44127978 T G KANSL1 Missense_Mutation p.E647D 0.12 tolerated(0.31) benign(0.005) TCGA-F5-6814-01 17 44128048 44128048 C T KANSL1 Missense_Mutation p.R624H 0.20 deleterious(0.01) probably_damaging(0.983) TCGA-F5-6814-01 17 44248544 44248544 A G KANSL1 Silent p.G322G 0.17 TCGA-F5-6814-01 17 44408787 44408787 T G LRRC37A Missense_Mutation p.F1382V 0.29 tolerated(0.38) benign(0.001) TCGA-F5-6814-01 17 44626400 44626400 G A LRRC37A2 Missense_Mutation p.V1299I 0.10 tolerated(0.64) benign(0.003) TCGA-F5-6814-01 17 44626649 44626649 T G LRRC37A2 Missense_Mutation p.F1382V 0.16 tolerated(1) benign(0.005) TCGA-F5-6814-01 17 44803919 44803919 T G NSF Missense_Mutation p.F589C 0.24 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 44851167 44851167 G A WNT3 Silent p.I63I 0.39 TCGA-F5-6814-01 17 44949898 44949898 A C WNT9B Missense_Mutation p.E31D 0.26 deleterious(0.02) benign(0.01) TCGA-F5-6814-01 17 45384947 45384947 G A ITGB3 Missense_Mutation p.D749N 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 45412642 45412642 G T EFCAB13 Missense_Mutation p.K37N 0.40 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 45452006 45452006 T G EFCAB13 Missense_Mutation p.I349S 0.19 tolerated(0.36) benign(0.119) TCGA-F5-6814-01 17 45452300 45452300 C T EFCAB13 Missense_Mutation p.S447L 0.26 tolerated(0.09) probably_damaging(0.977) TCGA-F5-6814-01 17 45517850 45517850 A G EFCAB13 Missense_Mutation p.T898A 0.09 tolerated(0.22) benign(0.057) TCGA-F5-6814-01 17 45747092 45747092 C T KPNB1 Nonsense_Mutation p.R425* 0.21 TCGA-F5-6814-01 17 45773611 45773611 A G TBKBP1 Missense_Mutation p.I45V 0.36 tolerated(0.05) probably_damaging(0.952) TCGA-F5-6814-01 17 45911879 45911879 C A LRRC46 Missense_Mutation p.H69N 0.31 deleterious(0) probably_damaging(0.949) TCGA-F5-6814-01 17 45913740 45913740 A G LRRC46 Missense_Mutation p.D165G 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 46196134 46196134 G A SNX11 Missense_Mutation p.R100Q 0.24 tolerated(0.1) probably_damaging(0.995) TCGA-F5-6814-01 17 46607734 46607734 C T HOXB1 Missense_Mutation p.R178Q 0.31 tolerated(1) benign(0.009) TCGA-F5-6814-01 17 47246221 47246221 G T B4GALNT2 Missense_Mutation p.R485I 0.14 deleterious(0.01) possibly_damaging(0.786) TCGA-F5-6814-01 17 47394529 47394529 C T ZNF652 Missense_Mutation p.V187I 0.41 tolerated(0.23) benign(0.071) TCGA-F5-6814-01 17 47394575 47394575 C A ZNF652 Missense_Mutation p.E171D 0.14 tolerated(0.12) benign(0.096) TCGA-F5-6814-01 17 47589327 47589327 G T NGFR Nonsense_Mutation p.E299* 0.29 TCGA-F5-6814-01 17 47656361 47656361 A C NXPH3 Missense_Mutation p.K153T 0.29 deleterious(0.01) possibly_damaging(0.893) TCGA-F5-6814-01 17 47874130 47874130 A C KAT7 Missense_Mutation p.N61T 0.20 tolerated_low_confidence(0.13) benign(0.016) TCGA-F5-6814-01 17 48262763 48262763 T G COL1A1 3'UTR 0.50 TCGA-F5-6814-01 17 48262869 48262869 G A COL1A1 Silent p.F1463F 0.26 TCGA-F5-6814-01 17 48431923 48431923 C A XYLT2 Missense_Mutation p.F261L 0.33 tolerated(0.09) possibly_damaging(0.78) TCGA-F5-6814-01 17 48503711 48503711 G T ACSF2 Missense_Mutation p.S30I 0.30 tolerated_low_confidence(0.18) benign(0.013) TCGA-F5-6814-01 17 48600334 48600334 A C MYCBPAP Missense_Mutation p.E474A 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 48629438 48629438 G A SPATA20 Silent p.R618R 0.22 TCGA-F5-6814-01 17 4872947 4872947 C T CAMTA2 Missense_Mutation p.R1103H 0.12 deleterious(0.01) possibly_damaging(0.767) TCGA-F5-6814-01 17 48734105 48734105 T G ABCC3 Missense_Mutation p.F89V 0.23 tolerated(0.12) benign(0.082) TCGA-F5-6814-01 17 5084598 5084598 C T ZNF594 3'UTR 0.38 TCGA-F5-6814-01 17 5085592 5085592 A G ZNF594 Missense_Mutation p.C654R 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 5086304 5086304 G A ZNF594 Silent p.S416S 0.65 TCGA-F5-6814-01 17 5086572 5086572 C T ZNF594 Missense_Mutation p.R327K 0.14 tolerated(0.2) benign(0.001) TCGA-F5-6814-01 17 51900616 51900616 G T KIF2B Missense_Mutation p.E74D 0.25 tolerated(0.36) benign(0.018) TCGA-F5-6814-01 17 51900923 51900923 G A KIF2B Missense_Mutation p.D177N 0.23 tolerated(0.49) benign(0.006) TCGA-F5-6814-01 17 51902441 51902441 G A KIF2B 3'UTR 0.53 TCGA-F5-6814-01 17 5257673 5257673 G T RABEP1 Missense_Mutation p.R328I 0.18 deleterious_low_confidence(0) benign(0.406) TCGA-F5-6814-01 17 53045756 53045756 C A COX11 Missense_Mutation p.Q84H 0.26 tolerated(0.16) benign(0.003) TCGA-F5-6814-01 17 53392736 53392736 C A HLF Missense_Mutation p.F200L 0.30 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 17 53392779 53392779 C T HLF Missense_Mutation p.R215C 0.22 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 17 5347829 5347829 G T DHX33 Nonsense_Mutation p.S607* 0.19 TCGA-F5-6814-01 17 53481218 53481218 C T MMD Missense_Mutation p.R119H 0.09 deleterious(0.02) probably_damaging(0.99) TCGA-F5-6814-01 17 53853468 53853468 G T PCTP 3'UTR 0.54 TCGA-F5-6814-01 17 54926213 54926213 C T DGKE Nonsense_Mutation p.R349* 0.50 TCGA-F5-6814-01 17 55028046 55028046 T G COIL Missense_Mutation p.K186T 0.08 deleterious(0.04) possibly_damaging(0.728) TCGA-F5-6814-01 17 55123444 55123444 G A RNF126P1 RNA 0.20 TCGA-F5-6814-01 17 55918362 55918362 C A MRPS23 Missense_Mutation p.E115D 0.14 tolerated(0.21) benign(0.211) TCGA-F5-6814-01 17 56052078 56052078 T C VEZF1 Missense_Mutation p.N441S 0.17 tolerated_low_confidence(0.46) benign(0.004) TCGA-F5-6814-01 17 56342307 56342307 C A LPO Missense_Mutation p.F497L 0.19 deleterious(0.02) possibly_damaging(0.9) TCGA-F5-6814-01 17 56345295 56345295 C T LPO Silent p.F693F 0.17 TCGA-F5-6814-01 17 56386131 56386131 T C BZRAP1 Missense_Mutation p.Y1501C 0.17 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 17 56400716 56400716 C A BZRAP1 Missense_Mutation p.K349N 0.32 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 17 56405112 56405112 G T BZRAP1 Missense_Mutation p.S57Y 0.29 deleterious_low_confidence(0) benign(0.058) TCGA-F5-6814-01 17 56405191 56405191 G A BZRAP1 Nonsense_Mutation p.R31* 0.29 TCGA-F5-6814-01 17 56603736 56603736 G A SEPT4 Intron 0.36 TCGA-F5-6814-01 17 56690879 56690879 T G TEX14 Missense_Mutation p.Q309P 0.15 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 17 56699058 56699058 C T TEX14 Silent p.P169P 0.39 TCGA-F5-6814-01 17 56707839 56707839 G T TEX14 Missense_Mutation p.F71L 0.24 tolerated(1) benign(0.001) TCGA-F5-6814-01 17 56811649 56811649 T C RAD51C 3'UTR 0.23 TCGA-F5-6814-01 17 57060236 57060236 G T PPM1E 3'Flank 0.48 TCGA-F5-6814-01 17 57181710 57181710 G A TRIM37 Missense_Mutation p.R23W 0.10 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 17 57270869 57270869 C A PRR11 Missense_Mutation p.S140Y 0.54 deleterious(0) probably_damaging(0.959) TCGA-F5-6814-01 17 57288132 57288132 C T SMG8 Silent p.L240L 0.32 TCGA-F5-6814-01 17 57288417 57288417 C T SMG8 Silent p.F335F 0.34 TCGA-F5-6814-01 17 57466798 57466798 A G YPEL2 Missense_Mutation p.E80G 0.27 tolerated(0.32) benign(0.008) TCGA-F5-6814-01 17 57665404 57665404 C T DHX40 Silent p.F524F 0.37 TCGA-F5-6814-01 17 57759734 57759734 G A CLTC Missense_Mutation p.R1182H 0.14 tolerated(0.06) benign(0.028) TCGA-F5-6814-01 17 57761031 57761031 G T CLTC Nonsense_Mutation p.E1413* 0.12 TCGA-F5-6814-01 17 57761315 57761315 A G CLTC Missense_Mutation p.N1468S 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 17 58126950 58126950 A G HEATR6 Silent p.C846C 0.21 TCGA-F5-6814-01 17 58136783 58136783 C A HEATR6 Missense_Mutation p.D575Y 0.10 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 17 58508545 58508545 C A C17orf64 Missense_Mutation p.S210Y 0.36 tolerated_low_confidence(0.07) possibly_damaging(0.868) TCGA-F5-6814-01 17 58740678 58740678 G T PPM1D Missense_Mutation p.R528I 0.27 deleterious_low_confidence(0) probably_damaging(0.909) TCGA-F5-6814-01 17 58952080 58952080 G A BCAS3 Silent p.T214T 0.28 TCGA-F5-6814-01 17 59485743 59485743 G A TBX2 Missense_Mutation p.R672H 0.37 deleterious(0.03) possibly_damaging(0.474) TCGA-F5-6814-01 17 59557611 59557611 G A TBX4 Missense_Mutation p.D318N 0.43 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 17 59668561 59668561 A C NACA2 5'UTR 0.50 TCGA-F5-6814-01 17 60042798 60042798 G A MED13 Silent p.S1471S 0.47 TCGA-F5-6814-01 17 60044006 60044006 G A MED13 Nonsense_Mutation p.R1400* 0.41 TCGA-F5-6814-01 17 60088156 60088156 T C MED13 Silent p.P574P 0.16 TCGA-F5-6814-01 17 60140535 60140535 A G MED13 Missense_Mutation p.V65A 0.33 deleterious(0) possibly_damaging(0.509) TCGA-F5-6814-01 17 60348715 60348715 T C TBC1D3P2 Intron 0.28 TCGA-F5-6814-01 17 60447647 60447647 G T EFCAB3 5'UTR 0.33 TCGA-F5-6814-01 17 60470987 60470987 C A EFCAB3 Missense_Mutation p.L169I 0.60 tolerated(0.05) benign(0.088) TCGA-F5-6814-01 17 60472531 60472531 C A EFCAB3 Missense_Mutation p.S209Y 0.38 tolerated(0.06) benign(0.006) TCGA-F5-6814-01 17 60755882 60755882 G A MRC2 Silent p.R690R 0.36 TCGA-F5-6814-01 17 60814476 60814476 G T MARCH10 Missense_Mutation p.F251L 0.32 deleterious(0.04) benign(0.014) TCGA-F5-6814-01 17 60814549 60814549 G A MARCH10 Missense_Mutation p.S227F 0.33 deleterious(0.01) possibly_damaging(0.907) TCGA-F5-6814-01 17 60814708 60814708 G T MARCH10 Intron 0.15 TCGA-F5-6814-01 17 61564009 61564009 T G ACE Missense_Mutation p.I717S 0.31 deleterious(0.04) benign(0.075) TCGA-F5-6814-01 17 61607792 61607792 C T KCNH6 Silent p.F188F 0.12 TCGA-F5-6814-01 17 61723404 61723404 G A MAP3K3 Missense_Mutation p.R77K 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 61770916 61770916 G A MAP3K3 Missense_Mutation p.G585S 0.33 deleterious(0.01) probably_damaging(0.927) TCGA-F5-6814-01 17 61787919 61787919 C T STRADA Silent p.A171A 0.16 TCGA-F5-6814-01 17 61897443 61897443 G A FTSJ3 Nonsense_Mutation p.R783* 0.25 TCGA-F5-6814-01 17 61910671 61910671 C T SMARCD2 Missense_Mutation p.R476H 0.17 tolerated(0.06) benign(0.302) TCGA-F5-6814-01 17 61958053 61958053 G T GH2 Missense_Mutation p.L179I 0.24 deleterious_low_confidence(0.01) benign(0.222) TCGA-F5-6814-01 17 61987629 61987629 G A CSHL1 Missense_Mutation p.R122W 0.40 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 17 61988035 61988035 C A CSHL1 Intron 0.24 TCGA-F5-6814-01 17 61988187 61988187 A C CSHL1 Missense_Mutation p.F36L 0.34 tolerated(0.12) probably_damaging(0.978) TCGA-F5-6814-01 17 61995163 61995163 T G GH1 Missense_Mutation p.D138A 0.27 deleterious(0.04) benign(0) TCGA-F5-6814-01 17 62081069 62081069 T C ICAM2 Missense_Mutation p.D195G 0.36 deleterious(0.04) probably_damaging(0.974) TCGA-F5-6814-01 17 62476408 62476408 C T POLG2 Silent p.S430S 0.37 TCGA-F5-6814-01 17 62496255 62496255 C T DDX5 Missense_Mutation p.S544N 0.38 tolerated_low_confidence(0.2) benign(0) TCGA-F5-6814-01 17 62496683 62496683 G A DDX5 Silent p.V475V 0.38 TCGA-F5-6814-01 17 62530785 62530785 G A CEP95 Missense_Mutation p.R667Q 0.18 deleterious(0.04) probably_damaging(0.978) TCGA-F5-6814-01 17 62796837 62796837 C T PLEKHM1P RNA 0.16 TCGA-F5-6814-01 17 62855792 62855792 C A LRRC37A3 Missense_Mutation p.R1491I 0.27 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 17 62856210 62856210 T G LRRC37A3 Missense_Mutation p.N1352H 0.11 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 17 62856348 62856348 G A LRRC37A3 Missense_Mutation p.R1306C 0.46 tolerated(0.12) possibly_damaging(0.696) TCGA-F5-6814-01 17 62892257 62892257 G A LRRC37A3 Silent p.V373V 0.16 TCGA-F5-6814-01 17 63156987 63156987 G A RGS9 Missense_Mutation p.R128Q 0.12 deleterious(0) benign(0.368) TCGA-F5-6814-01 17 63545699 63545699 C T AXIN2 Missense_Mutation p.D299N 0.17 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 17 63554170 63554170 A C AXIN2 Missense_Mutation p.F190C 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 64062985 64062985 C A CEP112 Missense_Mutation p.R289I 0.19 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 64731651 64731651 C A PRKCA Silent p.I367I 0.43 TCGA-F5-6814-01 17 65116714 65116714 T C HELZ Silent p.G1215G 0.08 TCGA-F5-6814-01 17 65144706 65144706 C T HELZ Missense_Mutation p.R867H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 17 65214777 65214777 A G HELZ Silent p.C48C 0.36 TCGA-F5-6814-01 17 6544540 6544540 C T TXNDC17 Silent p.C46C 0.23 TCGA-F5-6814-01 17 6547879 6547879 T G MED31 Missense_Mutation p.I102L 0.11 tolerated(1) benign(0.009) TCGA-F5-6814-01 17 65528960 65528960 G T PITPNC1 Nonsense_Mutation p.E31* 0.32 TCGA-F5-6814-01 17 65862669 65862669 A C BPTF Missense_Mutation p.K509T 0.18 benign(0.336) TCGA-F5-6814-01 17 65889598 65889598 G A BPTF Missense_Mutation p.R723H 0.41 probably_damaging(0.998) TCGA-F5-6814-01 17 65907646 65907646 G A BPTF Missense_Mutation p.D1216N 0.35 benign(0.022) TCGA-F5-6814-01 17 65918999 65918999 G A BPTF Silent p.L1867L 0.28 TCGA-F5-6814-01 17 66040164 66040164 T G KPNA2 Missense_Mutation p.F381V 0.09 tolerated(0.5) benign(0.056) TCGA-F5-6814-01 17 66878756 66878756 G T ABCA8 Missense_Mutation p.S1231Y 0.30 deleterious(0) possibly_damaging(0.786) TCGA-F5-6814-01 17 66881364 66881364 C A ABCA8 Missense_Mutation p.M1134I 0.45 deleterious(0.03) benign(0.002) TCGA-F5-6814-01 17 66903889 66903889 T C ABCA8 Missense_Mutation p.K717R 0.31 tolerated(0.15) benign(0.032) TCGA-F5-6814-01 17 66903908 66903908 G A ABCA8 Missense_Mutation p.P711S 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 17 66915585 66915585 C A ABCA8 Nonsense_Mutation p.E549* 0.19 TCGA-F5-6814-01 17 66925792 66925792 G A ABCA8 Silent p.F283F 0.37 TCGA-F5-6814-01 17 67031893 67031893 A C ABCA9 Missense_Mutation p.L284V 0.07 tolerated(0.11) benign(0.068) TCGA-F5-6814-01 17 6703448 6703448 G A TEKT1 Silent p.I385I 0.32 TCGA-F5-6814-01 17 67045516 67045516 A G ABCA9 Missense_Mutation p.F71S 0.10 deleterious(0.02) probably_damaging(0.993) TCGA-F5-6814-01 17 67084366 67084366 G T ABCA6 Missense_Mutation p.L1214I 0.28 tolerated(0.07) benign(0.255) TCGA-F5-6814-01 17 67096963 67096963 C T ABCA6 Missense_Mutation p.R996Q 0.36 tolerated(0.91) benign(0.079) TCGA-F5-6814-01 17 67097010 67097010 A C ABCA6 Missense_Mutation p.I980M 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-F5-6814-01 17 67152988 67152988 T G ABCA10 Missense_Mutation p.K1147T 0.10 tolerated(0.05) benign(0.141) TCGA-F5-6814-01 17 67178916 67178916 T G ABCA10 Missense_Mutation p.K844T 0.33 deleterious(0) possibly_damaging(0.714) TCGA-F5-6814-01 17 67190014 67190014 C A ABCA10 Nonsense_Mutation p.E488* 0.36 TCGA-F5-6814-01 17 67197792 67197792 C T ABCA10 Missense_Mutation p.D342N 0.33 tolerated(0.29) benign(0) TCGA-F5-6814-01 17 67246112 67246112 A G ABCA5 Silent p.L1567L 0.10 TCGA-F5-6814-01 17 67247996 67247996 C T ABCA5 Missense_Mutation p.R1476Q 0.33 tolerated(0.15) probably_damaging(0.982) TCGA-F5-6814-01 17 67251948 67251948 T A ABCA5 Missense_Mutation p.D1301V 0.32 tolerated(0.33) benign(0.131) TCGA-F5-6814-01 17 67256531 67256531 T G ABCA5 Missense_Mutation p.K1196T 0.25 tolerated(0.51) benign(0.102) TCGA-F5-6814-01 17 67257800 67257800 T G ABCA5 Missense_Mutation p.E1135D 0.25 tolerated(1) benign(0.048) TCGA-F5-6814-01 17 67282047 67282047 T G ABCA5 Missense_Mutation p.K755T 0.15 tolerated(0.36) benign(0.145) TCGA-F5-6814-01 17 67305532 67305532 C A ABCA5 Nonsense_Mutation p.E114* 0.35 TCGA-F5-6814-01 17 67513012 67513012 G T MAP2K6 Missense_Mutation p.D34Y 0.09 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 17 679099 679099 T C GLOD4 Missense_Mutation p.T108A 0.12 tolerated(0.61) benign(0.001) TCGA-F5-6814-01 17 68129142 68129142 T G KCNJ16 Missense_Mutation p.L305R 0.10 tolerated(0.17) probably_damaging(0.999) TCGA-F5-6814-01 17 68131343 68131343 A C KCNJ16 3'UTR 0.25 TCGA-F5-6814-01 17 68173197 68173197 T G KCNJ2 3'UTR 0.35 TCGA-F5-6814-01 17 68173553 68173553 C A KCNJ2 3'UTR 0.27 TCGA-F5-6814-01 17 68175100 68175100 G A KCNJ2 3'UTR 0.08 TCGA-F5-6814-01 17 68175181 68175181 A C KCNJ2 3'UTR 0.14 TCGA-F5-6814-01 17 70732853 70732853 G A SLC39A11 Missense_Mutation p.L210F 0.42 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 17 7100221 7100221 C T DLG4 Missense_Mutation p.R356Q 0.61 tolerated(0.05) possibly_damaging(0.514) TCGA-F5-6814-01 17 71281578 71281578 G A CDC42EP4 Silent p.I354I 0.23 TCGA-F5-6814-01 17 7129527 7129527 T C DVL2 Missense_Mutation p.E623G 0.29 tolerated(0.25) possibly_damaging(0.728) TCGA-F5-6814-01 17 7134053 7134053 T G DVL2 Silent p.V86V 0.11 TCGA-F5-6814-01 17 71354222 71354222 A C SDK2 Silent p.P1863P 0.09 TCGA-F5-6814-01 17 71420162 71420162 G A SDK2 Silent p.N551N 0.43 TCGA-F5-6814-01 17 7157936 7157936 A G ELP5 Missense_Mutation p.N91D 0.43 tolerated(0.47) possibly_damaging(0.699) TCGA-F5-6814-01 17 7245611 7245611 C A ACAP1 Missense_Mutation p.F83L 0.17 tolerated(0.18) benign(0.025) TCGA-F5-6814-01 17 7247366 7247366 A G ACAP1 Splice_Site p.X224_splice 0.07 TCGA-F5-6814-01 17 72540915 72540915 C A CD300C Missense_Mutation p.R78M 0.43 deleterious(0.02) benign(0.436) TCGA-F5-6814-01 17 72589298 72589298 A C C17orf77 3'UTR 0.25 TCGA-F5-6814-01 17 72926854 72926854 C T OTOP2 Missense_Mutation p.A375V 0.33 deleterious(0.02) probably_damaging(0.97) TCGA-F5-6814-01 17 72943357 72943357 C A OTOP3 Silent p.I469I 0.20 TCGA-F5-6814-01 17 72957988 72957988 G T HID1 Missense_Mutation p.F236L 0.20 tolerated(0.24) benign(0.02) TCGA-F5-6814-01 17 72959875 72959875 C T HID1 Missense_Mutation p.G116D 0.27 tolerated(0.17) benign(0.316) TCGA-F5-6814-01 17 73017046 73017046 A C ICT1 Missense_Mutation p.R189S 0.36 tolerated(0.06) possibly_damaging(0.752) TCGA-F5-6814-01 17 73017059 73017059 C A ICT1 Missense_Mutation p.H194N 0.16 tolerated(0.55) benign(0.012) TCGA-F5-6814-01 17 73096280 73096280 C A SLC16A5 Silent p.V174V 0.47 TCGA-F5-6814-01 17 73164311 73164311 G A SUMO2 3'UTR 0.27 TCGA-F5-6814-01 17 73491678 73491678 C A KIAA0195 Missense_Mutation p.D966E 0.26 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 17 73497130 73497130 C T CASKIN2 3'UTR 0.27 TCGA-F5-6814-01 17 73497698 73497698 G A CASKIN2 Silent p.L1123L 0.35 TCGA-F5-6814-01 17 73498467 73498467 C A CASKIN2 Missense_Mutation p.K896N 0.50 tolerated(0.38) benign(0.017) TCGA-F5-6814-01 17 73625414 73625414 G A RECQL5 Missense_Mutation p.P697S 0.26 tolerated(0.83) benign(0.026) TCGA-F5-6814-01 17 73748425 73748425 A G ITGB4 Missense_Mutation p.R1322G 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-F5-6814-01 17 73942750 73942750 G T ACOX1 3'UTR 0.34 TCGA-F5-6814-01 17 73999357 73999357 G A CDK3 Missense_Mutation p.E224K 0.33 deleterious(0) possibly_damaging(0.859) TCGA-F5-6814-01 17 7411723 7411723 A G POLR2A Missense_Mutation p.K1132E 0.35 probably_damaging(0.996) TCGA-F5-6814-01 17 7416515 7416515 G A POLR2A Silent p.S1644S 0.43 TCGA-F5-6814-01 17 7416822 7416822 A G POLR2A Missense_Mutation p.N1747D 0.11 unknown(0) TCGA-F5-6814-01 17 74328351 74328351 C T PRPSAP1 Silent p.A152A 0.23 TCGA-F5-6814-01 17 74328371 74328371 G A PRPSAP1 Silent p.L146L 0.31 TCGA-F5-6814-01 17 74340798 74340798 C A PRPSAP1 Nonsense_Mutation p.E82* 0.34 TCGA-F5-6814-01 17 74391933 74391933 G T UBE2O Missense_Mutation p.S940Y 0.44 tolerated(1) benign(0.011) TCGA-F5-6814-01 17 74394956 74394956 T G UBE2O Missense_Mutation p.N582T 0.09 deleterious(0.01) probably_damaging(0.98) TCGA-F5-6814-01 17 74729757 74729757 G A METTL23 Missense_Mutation p.D188N 0.10 tolerated(0.46) benign(0.002) TCGA-F5-6814-01 17 7483562 7483562 T C CD68 Missense_Mutation p.W162R 0.10 deleterious(0.05) probably_damaging(0.995) TCGA-F5-6814-01 17 75494690 75494690 G A SEPT9 Missense_Mutation p.A571T 0.17 tolerated(0.19) benign(0.022) TCGA-F5-6814-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.80 TCGA-F5-6814-01 17 7592315 7592315 G A WRAP53 Missense_Mutation p.E117K 0.13 tolerated(0.13) benign(0.007) TCGA-F5-6814-01 17 76236026 76236026 G A TMEM235 3'UTR 0.25 TCGA-F5-6814-01 17 76548857 76548857 G T DNAH17 Missense_Mutation p.L737I 0.17 benign(0.019) TCGA-F5-6814-01 17 7668874 7668874 G A DNAH2 Missense_Mutation p.E1168K 0.27 benign(0.018) TCGA-F5-6814-01 17 7724669 7724669 C A DNAH2 Missense_Mutation p.F3708L 0.76 probably_damaging(0.998) TCGA-F5-6814-01 17 77770335 77770335 C T CBX8 Missense_Mutation p.R25H 0.08 deleterious(0.02) possibly_damaging(0.867) TCGA-F5-6814-01 17 7793078 7793078 G A CHD3 Missense_Mutation p.R125Q 0.40 benign(0.238) TCGA-F5-6814-01 17 78082524 78082524 T C GAA Missense_Mutation p.M408T 0.35 tolerated(0.05) possibly_damaging(0.654) TCGA-F5-6814-01 17 78086695 78086695 C T GAA Silent p.L637L 0.47 TCGA-F5-6814-01 17 78185926 78185926 G A SGSH Missense_Mutation p.S298F 0.22 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 17 78280265 78280265 G A RNF213 Silent p.T808T 0.26 TCGA-F5-6814-01 17 78319901 78319901 C T RNF213 Missense_Mutation p.A2589V 0.46 benign(0.338) TCGA-F5-6814-01 17 78409985 78409985 G A ENDOV 3'UTR 0.50 TCGA-F5-6814-01 17 79108224 79108224 C T AATK Missense_Mutation p.V45I 0.17 tolerated(0.1) benign(0.133) TCGA-F5-6814-01 17 79409780 79409780 G A RP11-1055B8.7 Missense_Mutation p.D469N 0.20 benign(0.123) TCGA-F5-6814-01 17 79571726 79571726 A G NPLOC4 Missense_Mutation p.F228L 0.44 deleterious(0.03) possibly_damaging(0.755) TCGA-F5-6814-01 17 79612315 79612315 C A TSPAN10 Missense_Mutation p.L112M 0.40 deleterious(0.05) possibly_damaging(0.82) TCGA-F5-6814-01 17 79663023 79663023 C T HGS Missense_Mutation p.R463C 0.42 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 17 7983934 7983934 C A AC129492.6 3'UTR 0.28 TCGA-F5-6814-01 17 79866881 79866881 A G PCYT2 Missense_Mutation p.F71L 0.31 tolerated(0.35) benign(0.083) TCGA-F5-6814-01 17 7990766 7990766 C T ALOX12B 5'UTR 0.10 TCGA-F5-6814-01 17 79911116 79911116 C T NOTUM Silent p.G404G 0.29 TCGA-F5-6814-01 17 79967432 79967432 C T ASPSCR1 Missense_Mutation p.R387C 0.24 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 17 80019201 80019201 G A DUS1L Silent p.F242F 0.44 TCGA-F5-6814-01 17 80041246 80041246 G T FASN Missense_Mutation p.F1799L 0.25 tolerated(1) benign(0) TCGA-F5-6814-01 17 8006655 8006655 C A ALOXE3 Nonsense_Mutation p.E780* 0.72 TCGA-F5-6814-01 17 8011897 8011897 C A ALOXE3 Nonsense_Mutation p.E657* 0.38 TCGA-F5-6814-01 17 8021552 8021552 T C ALOXE3 Silent p.Q51Q 0.26 TCGA-F5-6814-01 17 80441667 80441667 C A NARF Intron 0.26 TCGA-F5-6814-01 17 80696455 80696455 G A FN3K Missense_Mutation p.D78N 0.39 tolerated(0.07) possibly_damaging(0.882) TCGA-F5-6814-01 17 80708521 80708521 G A FN3K Missense_Mutation p.D274N 0.26 tolerated(0.14) benign(0.013) TCGA-F5-6814-01 17 80789939 80789939 G A ZNF750 Missense_Mutation p.A131V 0.33 tolerated(0.26) benign(0.246) TCGA-F5-6814-01 17 80895195 80895195 G T TBCD Missense_Mutation p.K1080N 0.23 tolerated(0.05) possibly_damaging(0.493) TCGA-F5-6814-01 17 81043157 81043157 C A METRNL Missense_Mutation p.L172M 0.13 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 17 8243698 8243698 G T ODF4 Missense_Mutation p.S110I 0.41 tolerated(0.32) benign(0.243) TCGA-F5-6814-01 17 8448772 8448772 A C MYH10 Missense_Mutation p.I475M 0.71 probably_damaging(0.998) TCGA-F5-6814-01 17 8451646 8451646 T C MYH10 Missense_Mutation p.M382V 0.18 benign(0.153) TCGA-F5-6814-01 17 8526311 8526311 G A MYH10 Missense_Mutation p.S85F 0.71 possibly_damaging(0.65) TCGA-F5-6814-01 17 8730588 8730588 C A PIK3R6 Silent p.P472P 0.93 TCGA-F5-6814-01 17 8785182 8785182 C T PIK3R5 Missense_Mutation p.R741Q 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 17 9153826 9153826 G A STX8 3'UTR 0.24 TCGA-F5-6814-01 17 9580184 9580184 G A USP43 Missense_Mutation p.V319I 0.11 tolerated(1) benign(0.006) TCGA-F5-6814-01 17 9632224 9632224 G A USP43 Missense_Mutation p.A1097T 0.24 tolerated(1) benign(0.002) TCGA-F5-6814-01 18 10671435 10671435 G A PIEZO2 3'Flank 0.38 TCGA-F5-6814-01 18 11862409 11862409 C T GNAL Silent p.I246I 0.17 TCGA-F5-6814-01 18 11897067 11897067 C T MPPE1 Missense_Mutation p.R66H 0.13 tolerated(0.2) benign(0) TCGA-F5-6814-01 18 12254764 12254764 C T CIDEA Intron 0.73 TCGA-F5-6814-01 18 12329744 12329744 C A AFG3L2 Missense_Mutation p.K738N 0.40 deleterious(0) possibly_damaging(0.6) TCGA-F5-6814-01 18 12351367 12351367 C T AFG3L2 Missense_Mutation p.R455Q 0.30 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 18 12802052 12802052 A G PTPN2 Silent p.G319G 0.14 TCGA-F5-6814-01 18 13042237 13042237 T C CEP192 Silent p.S657S 0.09 TCGA-F5-6814-01 18 13069743 13069743 G A CEP192 Missense_Mutation p.E1688K 0.13 deleterious(0.02) benign(0.117) TCGA-F5-6814-01 18 13116486 13116486 C A CEP192 Missense_Mutation p.S2467Y 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 18 13681920 13681920 T G FAM210A Missense_Mutation p.K53Q 0.46 tolerated_low_confidence(0.06) benign(0.073) TCGA-F5-6814-01 18 13682036 13682036 C T FAM210A Missense_Mutation p.R14H 0.22 tolerated_low_confidence(1) benign(0) TCGA-F5-6814-01 18 13731728 13731728 C A RNMT Missense_Mutation p.S71Y 0.38 tolerated_low_confidence(0.1) benign(0.009) TCGA-F5-6814-01 18 13741530 13741530 C T RNMT Missense_Mutation p.R272C 0.37 tolerated(0.11) benign(0.009) TCGA-F5-6814-01 18 13826402 13826402 G T MC5R Missense_Mutation p.R213L 0.16 deleterious(0.04) possibly_damaging(0.448) TCGA-F5-6814-01 18 13826479 13826479 A G MC5R Missense_Mutation p.T239A 0.12 deleterious(0.01) possibly_damaging(0.749) TCGA-F5-6814-01 18 14478682 14478682 G T CXADRP3 RNA 0.24 TCGA-F5-6814-01 18 14478797 14478797 C A CXADRP3 RNA 0.38 TCGA-F5-6814-01 18 14752996 14752996 C T ANKRD30B Silent p.I165I 0.22 TCGA-F5-6814-01 18 14772170 14772170 G A ANKRD30B Silent p.R424R 0.19 TCGA-F5-6814-01 18 18533685 18533685 T G ROCK1 Missense_Mutation p.Q1305H 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 18 18534972 18534972 C A ROCK1 Missense_Mutation p.D1209Y 0.13 deleterious(0.01) possibly_damaging(0.76) TCGA-F5-6814-01 18 18550366 18550366 C A ROCK1 Missense_Mutation p.K921N 0.31 deleterious(0) possibly_damaging(0.843) TCGA-F5-6814-01 18 18629822 18629822 T G ROCK1 Missense_Mutation p.K65N 0.13 tolerated(0.18) benign(0.011) TCGA-F5-6814-01 18 18650519 18650519 T G ROCK1 Missense_Mutation p.K50T 0.10 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 18 19095480 19095480 C T GREB1L Silent p.G1668G 0.34 TCGA-F5-6814-01 18 19144267 19144267 C T ESCO1 Missense_Mutation p.R573Q 0.20 tolerated(0.31) benign(0) TCGA-F5-6814-01 18 19154732 19154732 C A ESCO1 Nonsense_Mutation p.E25* 0.18 TCGA-F5-6814-01 18 19154787 19154787 C A ESCO1 Missense_Mutation p.E6D 0.48 tolerated_low_confidence(0.08) benign(0.11) TCGA-F5-6814-01 18 19371379 19371379 G A MIB1 Missense_Mutation p.R318Q 0.15 tolerated(0.62) benign(0.015) TCGA-F5-6814-01 18 19429171 19429171 C A MIB1 Missense_Mutation p.S803Y 0.19 tolerated(0.26) benign(0.054) TCGA-F5-6814-01 18 19437188 19437188 T C MIB1 Silent p.D921D 0.15 TCGA-F5-6814-01 18 20529600 20529600 G A RBBP8 Missense_Mutation p.E58K 0.62 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 18 21096334 21096334 G A C18orf8 Silent p.A200A 0.44 TCGA-F5-6814-01 18 21121388 21121388 G A NPC1 Missense_Mutation p.S752F 0.42 deleterious(0) possibly_damaging(0.892) TCGA-F5-6814-01 18 21153437 21153437 C A NPC1 Missense_Mutation p.K53N 0.40 tolerated(0.41) benign(0.001) TCGA-F5-6814-01 18 21181136 21181136 C A ANKRD29 3'UTR 0.09 TCGA-F5-6814-01 18 21478789 21478789 G T LAMA3 Nonsense_Mutation p.E1901* 0.36 TCGA-F5-6814-01 18 21735699 21735699 G T CABYR Missense_Mutation p.K78N 0.24 deleterious(0.04) probably_damaging(0.998) TCGA-F5-6814-01 18 22029899 22029899 G T IMPACT Missense_Mutation p.K292N 0.27 tolerated(0.26) benign(0.001) TCGA-F5-6814-01 18 22030847 22030847 A C IMPACT 3'UTR 0.09 TCGA-F5-6814-01 18 224148 224148 G A THOC1 Missense_Mutation p.R414W 0.30 deleterious(0) benign(0.106) TCGA-F5-6814-01 18 22806036 22806036 A T ZNF521 Missense_Mutation p.S616T 0.40 tolerated(0.13) benign(0.026) TCGA-F5-6814-01 18 22806200 22806200 G T ZNF521 Missense_Mutation p.S561Y 0.38 deleterious(0.01) probably_damaging(0.925) TCGA-F5-6814-01 18 22806343 22806343 G T ZNF521 Missense_Mutation p.F513L 0.44 tolerated(0.14) probably_damaging(0.996) TCGA-F5-6814-01 18 22807495 22807495 G T ZNF521 Silent p.R129R 0.37 TCGA-F5-6814-01 18 23713953 23713953 G A PSMA8 Silent p.A8A 0.51 TCGA-F5-6814-01 18 23758905 23758905 T G PSMA8 Missense_Mutation p.L203V 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-F5-6814-01 18 23772298 23772298 G T PSMA8 Nonsense_Mutation p.E232* 0.12 TCGA-F5-6814-01 18 24035639 24035639 A C KCTD1 3'UTR 0.25 TCGA-F5-6814-01 18 24126781 24126781 C T KCTD1 Intron 0.35 TCGA-F5-6814-01 18 24496728 24496728 G T CHST9 Missense_Mutation p.A276D 0.21 deleterious(0.02) probably_damaging(0.948) TCGA-F5-6814-01 18 24497063 24497063 T G CHST9 Missense_Mutation p.K164N 0.08 tolerated(0.16) benign(0.101) TCGA-F5-6814-01 18 25570083 25570083 G A CDH2 Nonsense_Mutation p.R526* 0.16 TCGA-F5-6814-01 18 25591938 25591938 C A CDH2 Nonsense_Mutation p.E140* 0.22 TCGA-F5-6814-01 18 25593830 25593830 C A CDH2 Missense_Mutation p.E72D 0.50 tolerated(0.32) possibly_damaging(0.489) TCGA-F5-6814-01 18 2703704 2703704 A C SMCHD1 Missense_Mutation p.K554N 0.15 tolerated(0.37) probably_damaging(0.982) TCGA-F5-6814-01 18 2703849 2703849 G T SMCHD1 Nonsense_Mutation p.E603* 0.39 TCGA-F5-6814-01 18 2770097 2770097 G T SMCHD1 Nonsense_Mutation p.E1653* 0.25 TCGA-F5-6814-01 18 28574118 28574118 G T DSC3 3'UTR 0.32 TCGA-F5-6814-01 18 28598087 28598087 T C DSC3 Missense_Mutation p.K405E 0.34 tolerated(0.18) benign(0.036) TCGA-F5-6814-01 18 28660216 28660216 C T DSC2 Missense_Mutation p.A456T 0.29 tolerated(0.49) possibly_damaging(0.764) TCGA-F5-6814-01 18 28713908 28713908 T G DSC1 Missense_Mutation p.I688L 0.30 tolerated(0.35) benign(0.031) TCGA-F5-6814-01 18 28906914 28906914 C T DSG1 Silent p.F54F 0.34 TCGA-F5-6814-01 18 28914134 28914134 G T DSG1 Missense_Mutation p.R325I 0.35 deleterious(0.04) possibly_damaging(0.61) TCGA-F5-6814-01 18 2891551 2891551 C T EMILIN2 Missense_Mutation p.R476W 0.45 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 18 28968873 28968873 T G DSG4 Missense_Mutation p.L137V 0.18 tolerated(0.76) possibly_damaging(0.47) TCGA-F5-6814-01 18 28968937 28968937 C T DSG4 Missense_Mutation p.S158L 0.57 deleterious(0) benign(0.176) TCGA-F5-6814-01 18 29045366 29045366 G T DSG3 Missense_Mutation p.D453Y 0.37 deleterious(0) probably_damaging(0.932) TCGA-F5-6814-01 18 29116348 29116348 A C DSG2 Missense_Mutation p.K536T 0.35 tolerated(0.09) benign(0.007) TCGA-F5-6814-01 18 29175209 29175209 G T TTR Missense_Mutation p.E109D 0.22 tolerated(0.14) benign(0.054) TCGA-F5-6814-01 18 29207066 29207066 A C B4GALT6 Missense_Mutation p.F265L 0.30 deleterious(0) possibly_damaging(0.499) TCGA-F5-6814-01 18 2931362 2931362 C T LPIN2 Missense_Mutation p.A450T 0.45 tolerated(0.15) probably_damaging(0.995) TCGA-F5-6814-01 18 29339913 29339913 G A SLC25A52 Missense_Mutation p.R248C 0.31 tolerated(0.08) benign(0.049) TCGA-F5-6814-01 18 29339944 29339944 G T SLC25A52 Missense_Mutation p.F237L 0.28 tolerated(0.63) benign(0.005) TCGA-F5-6814-01 18 29435627 29435627 T G TRAPPC8 Missense_Mutation p.N1111T 0.32 deleterious(0) possibly_damaging(0.792) TCGA-F5-6814-01 18 29450373 29450373 C A TRAPPC8 Missense_Mutation p.D784Y 0.27 deleterious(0.01) benign(0.008) TCGA-F5-6814-01 18 29451005 29451005 T C TRAPPC8 Missense_Mutation p.E714G 0.10 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 18 29454463 29454463 C A TRAPPC8 Nonsense_Mutation p.E645* 0.48 TCGA-F5-6814-01 18 2946222 2946222 T C LPIN2 Intron 0.46 TCGA-F5-6814-01 18 29493411 29493411 C T TRAPPC8 Missense_Mutation p.R231Q 0.09 tolerated(0.13) possibly_damaging(0.832) TCGA-F5-6814-01 18 29793365 29793365 G A MEP1B Silent p.G474G 0.10 TCGA-F5-6814-01 18 30518053 30518053 C T CCDC178 Silent p.E842E 0.36 TCGA-F5-6814-01 18 30791997 30791997 A C CCDC178 Missense_Mutation p.F701V 0.11 tolerated(0.06) benign(0.311) TCGA-F5-6814-01 18 30992010 30992010 C A CCDC178 Missense_Mutation p.D15Y 0.23 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 18 31241586 31241586 C T ASXL3 Missense_Mutation p.S121L 0.18 benign(0.006) TCGA-F5-6814-01 18 31311985 31311985 C A ASXL3 Missense_Mutation p.F311L 0.22 benign(0.092) TCGA-F5-6814-01 18 31314356 31314356 C A ASXL3 Missense_Mutation p.F353L 0.24 probably_damaging(0.998) TCGA-F5-6814-01 18 31318871 31318871 C A ASXL3 Silent p.S501S 0.34 TCGA-F5-6814-01 18 31432900 31432900 G A NOL4 Missense_Mutation p.A608V 0.45 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 18 3255938 3255938 A G MYL12A 3'UTR 0.10 TCGA-F5-6814-01 18 32822364 32822364 G T ZNF397 5'UTR 0.21 TCGA-F5-6814-01 18 32825307 32825307 G A ZNF397 Missense_Mutation p.R213Q 0.43 tolerated(0.55) benign(0.006) TCGA-F5-6814-01 18 32826003 32826003 G T ZNF397 Missense_Mutation p.R445I 0.28 deleterious(0) possibly_damaging(0.83) TCGA-F5-6814-01 18 32888709 32888709 T G ZNF271 RNA 0.12 TCGA-F5-6814-01 18 32890307 32890307 G T ZNF271 RNA 0.39 TCGA-F5-6814-01 18 32917323 32917323 C A ZNF24 Missense_Mutation p.R327I 0.30 deleterious(0) possibly_damaging(0.481) TCGA-F5-6814-01 18 33059304 33059304 A G INO80C Silent p.A149A 0.11 TCGA-F5-6814-01 18 33558932 33558932 A C C18orf21 Missense_Mutation p.N209T 0.15 tolerated(0.38) benign(0.053) TCGA-F5-6814-01 18 33750158 33750158 C T ELP2 Nonsense_Mutation p.R802* 0.26 TCGA-F5-6814-01 18 33831175 33831175 T G MOCOS Missense_Mutation p.F698C 0.31 deleterious(0) benign(0.078) TCGA-F5-6814-01 18 33848677 33848677 T G MOCOS 3'UTR 0.29 TCGA-F5-6814-01 18 33935594 33935594 C T FHOD3 Silent p.F86F 0.22 TCGA-F5-6814-01 18 3452101 3452101 T C TGIF1 Missense_Mutation p.F42L 0.13 tolerated_low_confidence(0.16) benign(0) TCGA-F5-6814-01 18 346314 346314 C A COLEC12 Missense_Mutation p.K436N 0.41 tolerated(0.09) probably_damaging(0.95) TCGA-F5-6814-01 18 34647013 34647013 C A KIAA1328 Missense_Mutation p.S246Y 0.16 tolerated(0.14) possibly_damaging(0.757) TCGA-F5-6814-01 18 347255 347255 G A COLEC12 Missense_Mutation p.R123C 0.19 deleterious(0.03) possibly_damaging(0.725) TCGA-F5-6814-01 18 3502571 3502571 C A DLGAP1 Nonsense_Mutation p.E882* 0.28 TCGA-F5-6814-01 18 3742511 3742511 T G DLGAP1 Missense_Mutation p.I392L 0.07 tolerated(0.43) benign(0.001) TCGA-F5-6814-01 18 39567842 39567842 G T PIK3C3 Nonsense_Mutation p.E200* 0.29 TCGA-F5-6814-01 18 40323639 40323639 C A RIT2 Missense_Mutation p.G158V 0.30 deleterious(0.03) benign(0.099) TCGA-F5-6814-01 18 40695400 40695400 C A RIT2 Missense_Mutation p.G29W 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 18 40853658 40853658 C A SYT4 Missense_Mutation p.D246Y 0.16 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 18 42456722 42456722 C T SETBP1 Intron 0.11 TCGA-F5-6814-01 18 42531324 42531324 G T SETBP1 Missense_Mutation p.K673N 0.39 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 18 42643264 42643264 C T SETBP1 Silent p.F1464F 0.35 TCGA-F5-6814-01 18 43319273 43319273 C T SLC14A1 Missense_Mutation p.A326V 0.38 deleterious(0) possibly_damaging(0.843) TCGA-F5-6814-01 18 43446843 43446843 C A EPG5 Nonsense_Mutation p.E2181* 0.27 TCGA-F5-6814-01 18 43464763 43464763 C T EPG5 Missense_Mutation p.G1708D 0.29 tolerated(0.18) probably_damaging(0.996) TCGA-F5-6814-01 18 43573639 43573639 T G PSTPIP2 Missense_Mutation p.N225H 0.34 tolerated(0.14) benign(0.043) TCGA-F5-6814-01 18 43705709 43705709 G T HAUS1 Splice_Site p.X247_splice 0.42 TCGA-F5-6814-01 18 43796497 43796497 G A C18orf25 Silent p.T217T 0.25 TCGA-F5-6814-01 18 44036006 44036006 A C RNF165 Missense_Mutation p.I296L 0.13 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 18 44104480 44104480 C T LOXHD1 Missense_Mutation p.D498N 0.40 tolerated(0.75) possibly_damaging(0.794) TCGA-F5-6814-01 18 44184164 44184164 C A LOXHD1 Missense_Mutation p.R263I 0.36 tolerated(0.32) possibly_damaging(0.883) TCGA-F5-6814-01 18 44284615 44284615 A C ST8SIA5 Missense_Mutation p.F48L 0.40 benign(0.001) TCGA-F5-6814-01 18 44398312 44398312 A T PIAS2 Intron 0.23 TCGA-F5-6814-01 18 44407966 44407966 C A PIAS2 Missense_Mutation p.R488S 0.19 deleterious(0) benign(0.064) TCGA-F5-6814-01 18 44601667 44601667 G A KATNAL2 Missense_Mutation p.R271H 0.33 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 18 47110059 47110059 C T LIPG Missense_Mutation p.R431C 0.36 deleterious(0.02) probably_damaging(0.932) TCGA-F5-6814-01 18 47455910 47455910 G A MYO5B Nonsense_Mutation p.R688* 0.35 TCGA-F5-6814-01 18 47764984 47764984 C T CCDC11 Silent p.E435E 0.35 TCGA-F5-6814-01 18 47795989 47795989 A C MBD1 3'UTR 0.40 TCGA-F5-6814-01 18 47917531 47917531 G T SKA1 Missense_Mutation p.D163Y 0.38 tolerated(0.26) benign(0.033) TCGA-F5-6814-01 18 48422190 48422190 G T ME2 5'UTR 0.42 TCGA-F5-6814-01 18 48447518 48447518 G T ME2 Missense_Mutation p.K339N 0.10 tolerated(0.12) possibly_damaging(0.625) TCGA-F5-6814-01 18 50278570 50278570 C A DCC Missense_Mutation p.H80N 0.38 deleterious(0) benign(0) TCGA-F5-6814-01 18 50683753 50683753 C T DCC Missense_Mutation p.S430L 0.21 deleterious(0) possibly_damaging(0.629) TCGA-F5-6814-01 18 50741950 50741950 G T DCC Nonsense_Mutation p.E632* 0.17 TCGA-F5-6814-01 18 50832017 50832017 C T DCC Nonsense_Mutation p.R661* 0.34 TCGA-F5-6814-01 18 50866184 50866184 C T DCC Nonsense_Mutation p.R756* 0.19 TCGA-F5-6814-01 18 51692488 51692488 C A MBD2 Nonsense_Mutation p.E297* 0.33 TCGA-F5-6814-01 18 51863496 51863496 G A STARD6 Missense_Mutation p.S89L 0.37 tolerated(0.17) benign(0.016) TCGA-F5-6814-01 18 52605247 52605247 T G CCDC68 Missense_Mutation p.K96Q 0.42 deleterious(0.01) possibly_damaging(0.628) TCGA-F5-6814-01 18 52895478 52895478 G A TCF4 Missense_Mutation p.S767L 0.47 tolerated(0.1) benign(0.389) TCGA-F5-6814-01 18 52896184 52896184 G A TCF4 Silent p.L693L 0.17 TCGA-F5-6814-01 18 5398075 5398075 C T EPB41L3 Missense_Mutation p.R806Q 0.38 tolerated(0.07) benign(0.251) TCGA-F5-6814-01 18 54281690 54281690 G A TXNL1 Missense_Mutation p.R234C 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 18 5428395 5428395 G A EPB41L3 Nonsense_Mutation p.R328* 0.19 TCGA-F5-6814-01 18 54359035 54359035 G A WDR7 Missense_Mutation p.R318Q 0.35 tolerated(0.31) benign(0.001) TCGA-F5-6814-01 18 54362230 54362230 G T WDR7 Silent p.L386L 0.33 TCGA-F5-6814-01 18 5478314 5478314 T C EPB41L3 Missense_Mutation p.I103V 0.30 tolerated(0.38) benign(0.009) TCGA-F5-6814-01 18 54814952 54814952 G T BOD1L2 Nonsense_Mutation p.E137* 0.38 TCGA-F5-6814-01 18 55024154 55024154 C A ST8SIA3 Missense_Mutation p.L105I 0.42 benign(0.024) TCGA-F5-6814-01 18 55282936 55282936 C A NARS Missense_Mutation p.K93N 0.18 tolerated(0.06) benign(0.172) TCGA-F5-6814-01 18 55336484 55336484 A C ATP8B1 Intron 0.40 TCGA-F5-6814-01 18 55362433 55362433 C T ATP8B1 Missense_Mutation p.D304N 0.32 tolerated(0.07) benign(0.429) TCGA-F5-6814-01 18 56184236 56184236 A G ALPK2 Silent p.P1948P 0.12 TCGA-F5-6814-01 18 56202551 56202551 A G ALPK2 Missense_Mutation p.I1623T 0.31 tolerated(0.55) benign(0.007) TCGA-F5-6814-01 18 56202924 56202924 C T ALPK2 Missense_Mutation p.E1499K 0.25 tolerated(0.51) benign(0.004) TCGA-F5-6814-01 18 56202949 56202949 G T ALPK2 Silent p.A1490A 0.15 TCGA-F5-6814-01 18 56246910 56246910 G A ALPK2 Silent p.F366F 0.39 TCGA-F5-6814-01 18 56274592 56274592 G T ALPK2 Missense_Mutation p.F63L 0.19 tolerated(0.09) benign(0.386) TCGA-F5-6814-01 18 56409145 56409145 G A MALT1 Missense_Mutation p.R551Q 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 18 56939671 56939671 G A RAX Silent p.F155F 0.11 TCGA-F5-6814-01 18 56985605 56985605 A C CPLX4 Silent p.G30G 0.37 TCGA-F5-6814-01 18 58039593 58039593 G T MC4R 5'UTR 0.39 TCGA-F5-6814-01 18 581057 581057 C A CETN1 3'UTR 0.14 TCGA-F5-6814-01 18 5891498 5891498 C T TMEM200C Missense_Mutation p.E189K 0.37 deleterious(0.01) probably_damaging(0.974) TCGA-F5-6814-01 18 59774095 59774095 C T PIGN Missense_Mutation p.R565H 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 18 59966047 59966047 G T KIAA1468 Nonsense_Mutation p.E1162* 0.09 TCGA-F5-6814-01 18 60036133 60036133 C A TNFRSF11A Nonsense_Mutation p.S328* 0.44 TCGA-F5-6814-01 18 6093469 6093469 G A L3MBTL4 Missense_Mutation p.R420C 0.26 deleterious(0.02) benign(0.007) TCGA-F5-6814-01 18 60985207 60985207 T C BCL2 Intron 0.43 TCGA-F5-6814-01 18 61058139 61058139 C T VPS4B 3'UTR 0.35 TCGA-F5-6814-01 18 61228352 61228352 C T SERPINB12 Missense_Mutation p.T140M 0.13 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 18 61231344 61231344 T C SERPINB12 Silent p.C212C 0.19 TCGA-F5-6814-01 18 61256049 61256049 G A SERPINB13 Missense_Mutation p.A50T 0.38 deleterious(0.04) benign(0.065) TCGA-F5-6814-01 18 61260108 61260108 A C SERPINB13 Missense_Mutation p.E125D 0.32 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 18 61261713 61261713 G T SERPINB13 Missense_Mutation p.E199D 0.19 tolerated(0.12) probably_damaging(0.999) TCGA-F5-6814-01 18 61307003 61307003 A G SERPINB4 Silent p.I159I 0.32 TCGA-F5-6814-01 18 61565050 61565050 T G SERPINB2 Missense_Mutation p.I169M 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 18 61570329 61570329 G A SERPINB2 Silent p.R346R 0.37 TCGA-F5-6814-01 18 61627535 61627535 C T HMSD Silent p.F122F 0.16 TCGA-F5-6814-01 18 61654238 61654238 G A SERPINB8 Missense_Mutation p.R284Q 0.28 tolerated(1) benign(0.037) TCGA-F5-6814-01 18 6213255 6213255 A G L3MBTL4 Silent p.L292L 0.24 TCGA-F5-6814-01 18 6264014 6264014 C T L3MBTL4 Missense_Mutation p.A51T 0.32 tolerated(0.37) benign(0.001) TCGA-F5-6814-01 18 627276 627276 C A CLUL1 Silent p.V201V 0.22 TCGA-F5-6814-01 18 64172005 64172005 C T CDH19 3'UTR 0.52 TCGA-F5-6814-01 18 64172255 64172255 C A CDH19 Nonsense_Mutation p.E705* 0.35 TCGA-F5-6814-01 18 64235672 64235672 T C CDH19 Silent p.V157V 0.44 TCGA-F5-6814-01 18 644924 644924 T G CLUL1 Missense_Mutation p.I408M 0.11 deleterious(0.03) possibly_damaging(0.616) TCGA-F5-6814-01 18 65178497 65178497 A C DSEL Missense_Mutation p.L1127V 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 18 65178861 65178861 A G DSEL Silent p.Y1005Y 0.21 TCGA-F5-6814-01 18 65181272 65181272 G A DSEL Nonsense_Mutation p.R202* 0.35 TCGA-F5-6814-01 18 65181719 65181719 T G DSEL Missense_Mutation p.K53Q 0.37 deleterious_low_confidence(0.04) benign(0.124) TCGA-F5-6814-01 18 65182046 65182046 C A DSEL 5'UTR 0.26 TCGA-F5-6814-01 18 65182531 65182531 C A DSEL 5'UTR 0.12 TCGA-F5-6814-01 18 65182699 65182699 C A DSEL 5'UTR 0.30 TCGA-F5-6814-01 18 66504328 66504328 C T CCDC102B Nonsense_Mutation p.R110* 0.37 TCGA-F5-6814-01 18 67563105 67563105 A C CD226 Missense_Mutation p.F187V 0.09 deleterious(0.01) benign(0.229) TCGA-F5-6814-01 18 67684813 67684813 T C RTTN Missense_Mutation p.N2084S 0.45 tolerated(0.17) probably_damaging(0.996) TCGA-F5-6814-01 18 67753891 67753891 T G RTTN Silent p.V1444V 0.19 TCGA-F5-6814-01 18 67864904 67864904 C A RTTN Missense_Mutation p.D217Y 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 18 67995968 67995968 C T SOCS6 3'UTR 0.35 TCGA-F5-6814-01 18 67996129 67996129 T G SOCS6 3'UTR 0.08 TCGA-F5-6814-01 18 67996408 67996408 C A SOCS6 3'UTR 0.41 TCGA-F5-6814-01 18 67996614 67996614 C T SOCS6 3'UTR 0.22 TCGA-F5-6814-01 18 685927 685927 C A ENOSF1 Missense_Mutation p.K266N 0.42 tolerated(0.39) benign(0.008) TCGA-F5-6814-01 18 6908960 6908960 C A ARHGAP28 Missense_Mutation p.H519N 0.07 tolerated(0.11) benign(0.224) TCGA-F5-6814-01 18 6942125 6942125 C T LAMA1 Missense_Mutation p.E3061K 0.47 deleterious(0.01) benign(0.029) TCGA-F5-6814-01 18 6986182 6986182 C A LAMA1 Missense_Mutation p.S1778I 0.18 deleterious(0.01) benign(0.142) TCGA-F5-6814-01 18 6992659 6992659 G T LAMA1 Missense_Mutation p.S1690Y 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-F5-6814-01 18 71796815 71796815 C A FBXO15 Nonsense_Mutation p.E204* 0.32 TCGA-F5-6814-01 18 71825833 71825833 C A TIMM21 3'UTR 0.36 TCGA-F5-6814-01 18 72109325 72109325 G T FAM69C Silent p.A301A 0.52 TCGA-F5-6814-01 18 72343146 72343146 G A ZNF407 Silent p.S57S 0.16 TCGA-F5-6814-01 18 72343930 72343930 G T ZNF407 Nonsense_Mutation p.G319* 0.30 TCGA-F5-6814-01 18 72344654 72344654 G A ZNF407 Missense_Mutation p.R560H 0.24 deleterious(0.01) benign(0) TCGA-F5-6814-01 18 72346715 72346715 G T ZNF407 Missense_Mutation p.R1247I 0.67 deleterious(0.03) benign(0.202) TCGA-F5-6814-01 18 72347213 72347213 G T ZNF407 Missense_Mutation p.R1413L 0.31 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 18 72776331 72776331 G T ZNF407 Missense_Mutation p.Q2218H 0.44 deleterious(0.05) probably_damaging(0.99) TCGA-F5-6814-01 18 73000406 73000406 C T TSHZ1 Missense_Mutation p.S970L 0.29 deleterious(0) benign(0.06) TCGA-F5-6814-01 18 73001011 73001011 C A TSHZ1 3'UTR 0.37 TCGA-F5-6814-01 18 73001122 73001122 T G TSHZ1 3'UTR 0.39 TCGA-F5-6814-01 18 74092244 74092244 C T ZNF516 Missense_Mutation p.R609H 0.40 tolerated(0.58) benign(0.002) TCGA-F5-6814-01 18 74154836 74154836 C T ZNF516 Missense_Mutation p.E59K 0.36 deleterious(0.01) probably_damaging(0.989) TCGA-F5-6814-01 18 74637251 74637251 G A ZNF236 Silent p.P1254P 0.24 TCGA-F5-6814-01 18 74980781 74980781 G T GALR1 Missense_Mutation p.D325Y 0.15 deleterious(0.01) benign(0.01) TCGA-F5-6814-01 18 76753313 76753313 C T SALL3 Missense_Mutation p.S441L 0.67 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 18 77063703 77063703 A G ATP9B Missense_Mutation p.D504G 0.19 tolerated(0.23) benign(0.027) TCGA-F5-6814-01 18 77089177 77089177 A G ATP9B Missense_Mutation p.T604A 0.30 tolerated(0.22) benign(0.058) TCGA-F5-6814-01 18 77659072 77659072 C T KCNG2 Silent p.F219F 0.16 TCGA-F5-6814-01 18 8069731 8069731 C T PTPRM Missense_Mutation p.R394W 0.23 deleterious(0) benign(0.017) TCGA-F5-6814-01 18 8813147 8813147 G T SOGA2 Missense_Mutation p.E925D 0.28 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 18 905475 905475 G A ADCYAP1 Missense_Mutation p.G30R 0.67 deleterious(0.05) probably_damaging(0.99) TCGA-F5-6814-01 18 9134310 9134310 A C NDUFV2 3'UTR 0.41 TCGA-F5-6814-01 18 9258585 9258585 A G ANKRD12 Missense_Mutation p.T1774A 0.40 tolerated(0.08) benign(0.037) TCGA-F5-6814-01 18 9530918 9530918 T G RALBP1 Silent p.V478V 0.39 TCGA-F5-6814-01 18 9815163 9815163 T C RAB31 Silent p.G108G 0.29 TCGA-F5-6814-01 18 9815192 9815192 G T RAB31 Missense_Mutation p.G118V 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 18 9887028 9887028 A C TXNDC2 Missense_Mutation p.E184D 0.45 tolerated(0.42) possibly_damaging(0.873) TCGA-F5-6814-01 18 9937030 9937030 C T VAPA Silent p.C128C 0.26 TCGA-F5-6814-01 19 10071203 10071203 C T COL5A3 Missense_Mutation p.E1708K 0.12 unknown(0) TCGA-F5-6814-01 19 10090085 10090085 T G COL5A3 Missense_Mutation p.Q907H 0.39 unknown(0) TCGA-F5-6814-01 19 10127734 10127734 C T RDH8 Silent p.V55V 0.45 TCGA-F5-6814-01 19 10203883 10203883 T G C19orf66 3'UTR 0.55 TCGA-F5-6814-01 19 10221444 10221444 C A PPAN Nonsense_Mutation p.S368* 0.33 TCGA-F5-6814-01 19 10254637 10254637 C T DNMT1 Missense_Mutation p.R974H 0.31 deleterious(0.04) benign(0.022) TCGA-F5-6814-01 19 10262098 10262098 G T DNMT1 Silent p.I747I 0.31 TCGA-F5-6814-01 19 10267124 10267124 C T DNMT1 Missense_Mutation p.E448K 0.16 tolerated(0.18) benign(0.031) TCGA-F5-6814-01 19 10283807 10283807 A C DNMT1 Missense_Mutation p.S243A 0.10 tolerated_low_confidence(0.67) benign(0.001) TCGA-F5-6814-01 19 10398741 10398741 G A ICAM4 Missense_Mutation p.V234I 0.20 deleterious_low_confidence(0) benign(0.103) TCGA-F5-6814-01 19 1056180 1056180 G A ABCA7 Missense_Mutation p.D1452N 0.35 tolerated(0.07) possibly_damaging(0.71) TCGA-F5-6814-01 19 10610212 10610212 G A KEAP1 Silent p.S166S 0.24 TCGA-F5-6814-01 19 10795122 10795122 A G ILF3 Intron 0.10 TCGA-F5-6814-01 19 10904485 10904485 G A DNM2 Missense_Mutation p.R361Q 0.41 deleterious(0) possibly_damaging(0.87) TCGA-F5-6814-01 19 10970624 10970624 C T C19orf38 Silent p.F165F 0.21 TCGA-F5-6814-01 19 110973 110973 T C OR4F17 Missense_Mutation p.F99L 0.20 tolerated(0.7) benign(0.011) TCGA-F5-6814-01 19 11107032 11107032 G T SMARCA4 Missense_Mutation p.E579D 0.20 benign(0.011) TCGA-F5-6814-01 19 11200245 11200245 A C LDLR Missense_Mutation p.K7N 0.25 tolerated(0.48) benign(0.019) TCGA-F5-6814-01 19 11660686 11660686 G A CNN1 3'UTR 0.13 TCGA-F5-6814-01 19 11664579 11664579 G A ELOF1 Silent p.C78C 0.31 TCGA-F5-6814-01 19 11727866 11727866 G A ZNF627 Missense_Mutation p.R183Q 0.39 tolerated(1) probably_damaging(0.994) TCGA-F5-6814-01 19 11728202 11728202 G A ZNF627 Missense_Mutation p.R295Q 0.52 tolerated(0.67) benign(0.086) TCGA-F5-6814-01 19 11796201 11796201 C T ZNF833P RNA 0.15 TCGA-F5-6814-01 19 11832638 11832638 G A ZNF823 Nonsense_Mutation p.R571* 0.17 TCGA-F5-6814-01 19 11833222 11833222 C T ZNF823 Missense_Mutation p.R376Q 0.31 tolerated(0.62) benign(0.127) TCGA-F5-6814-01 19 11891130 11891130 A C ZNF441 Missense_Mutation p.H164P 0.16 deleterious(0.03) benign(0.125) TCGA-F5-6814-01 19 11917040 11917040 G A ZNF491 Missense_Mutation p.R91Q 0.48 tolerated(0.83) benign(0.096) TCGA-F5-6814-01 19 11917515 11917515 G A ZNF491 Silent p.G249G 0.32 TCGA-F5-6814-01 19 11918806 11918806 G T ZNF491 3'UTR 0.37 TCGA-F5-6814-01 19 11943523 11943523 A G ZNF440 Missense_Mutation p.E511G 0.13 tolerated(1) benign(0) TCGA-F5-6814-01 19 11978433 11978433 G T ZNF439 Missense_Mutation p.K183N 0.34 deleterious(0) benign(0.245) TCGA-F5-6814-01 19 11979132 11979132 G T ZNF439 Silent p.G416G 0.48 TCGA-F5-6814-01 19 12059656 12059656 A T ZNF700 Missense_Mutation p.T273S 0.40 tolerated(0.09) benign(0.062) TCGA-F5-6814-01 19 12060056 12060056 G A ZNF700 Missense_Mutation p.R406Q 0.35 tolerated(0.8) benign(0.253) TCGA-F5-6814-01 19 12060846 12060846 G A ZNF700 Silent p.K669K 0.21 TCGA-F5-6814-01 19 12061010 12061010 G T ZNF700 Missense_Mutation p.R724M 0.10 deleterious(0.02) possibly_damaging(0.465) TCGA-F5-6814-01 19 12061096 12061096 A G ZNF700 3'UTR 0.15 TCGA-F5-6814-01 19 12089200 12089200 G T ZNF763 Missense_Mutation p.R157I 0.39 tolerated(0.16) benign(0.01) TCGA-F5-6814-01 19 12089506 12089506 A G ZNF763 Missense_Mutation p.Y259C 0.25 deleterious(0.01) probably_damaging(0.987) TCGA-F5-6814-01 19 12154628 12154628 C T ZNF878 Missense_Mutation p.A530T 0.33 tolerated(1) benign(0.002) TCGA-F5-6814-01 19 12154831 12154831 G T ZNF878 Missense_Mutation p.S462Y 0.20 tolerated(1) possibly_damaging(0.516) TCGA-F5-6814-01 19 12184956 12184956 G T ZNF844 Missense_Mutation p.R38S 0.41 deleterious(0.02) possibly_damaging(0.849) TCGA-F5-6814-01 19 12187029 12187029 A C ZNF844 Missense_Mutation p.K365T 0.48 deleterious(0.01) benign(0.154) TCGA-F5-6814-01 19 12221198 12221198 C A ZNF788 Missense_Mutation p.L48I 0.25 deleterious(0.02) probably_damaging(0.991) TCGA-F5-6814-01 19 12222257 12222257 C A ZNF788 5'UTR 0.25 TCGA-F5-6814-01 19 12256030 12256030 A C ZNF625 3'Flank 0.31 TCGA-F5-6814-01 19 12297518 12297518 G T ZNF136 Nonsense_Mutation p.E109* 0.27 TCGA-F5-6814-01 19 12383449 12383449 A C ZNF44 Missense_Mutation p.F589V 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 19 12461025 12461025 C T ZNF442 Silent p.E458E 0.17 TCGA-F5-6814-01 19 12461407 12461407 T C ZNF442 Missense_Mutation p.H331R 0.37 tolerated(0.4) possibly_damaging(0.794) TCGA-F5-6814-01 19 12461810 12461810 G A ZNF442 Nonsense_Mutation p.R197* 0.40 TCGA-F5-6814-01 19 12501641 12501641 C A ZNF799 Missense_Mutation p.R524I 0.76 tolerated(0.06) possibly_damaging(0.872) TCGA-F5-6814-01 19 12541231 12541231 C A ZNF443 Missense_Mutation p.E585D 0.40 tolerated(0.08) benign(0.195) TCGA-F5-6814-01 19 12574925 12574925 C T ZNF709 Missense_Mutation p.R604Q 0.69 tolerated(0.74) benign(0) TCGA-F5-6814-01 19 12576017 12576017 C T ZNF709 Missense_Mutation p.R240Q 0.23 tolerated(0.65) probably_damaging(0.99) TCGA-F5-6814-01 19 12637383 12637383 C T ZNF564 Silent p.T513T 0.38 TCGA-F5-6814-01 19 12637432 12637432 C A ZNF564 Missense_Mutation p.R497I 0.11 deleterious(0.02) benign(0.301) TCGA-F5-6814-01 19 12692316 12692316 C A ZNF490 Missense_Mutation p.E191D 0.20 tolerated(0.05) benign(0.348) TCGA-F5-6814-01 19 12739037 12739037 C T ZNF791 Nonsense_Mutation p.R232* 0.41 TCGA-F5-6814-01 19 12740029 12740029 T C ZNF791 Silent p.S562S 0.10 TCGA-F5-6814-01 19 12757384 12757384 T C MAN2B1 3'UTR 0.13 TCGA-F5-6814-01 19 12903877 12903877 T A JUNB 3'UTR 0.10 TCGA-F5-6814-01 19 12969196 12969196 G T MAST1 Missense_Mutation p.K366N 0.21 deleterious(0.02) benign(0.34) TCGA-F5-6814-01 19 12976226 12976226 G A MAST1 Missense_Mutation p.E579K 0.32 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 19 13255672 13255672 C A STX10 Nonsense_Mutation p.E162* 0.41 TCGA-F5-6814-01 19 13265042 13265042 T C IER2 3'UTR 0.08 TCGA-F5-6814-01 19 13419245 13419245 A C CACNA1A Missense_Mutation p.I589S 0.34 probably_damaging(0.923) TCGA-F5-6814-01 19 13419337 13419337 G T CACNA1A Silent p.I558I 0.63 TCGA-F5-6814-01 19 13873919 13873919 G A CCDC130 3'UTR 0.44 TCGA-F5-6814-01 19 14070805 14070805 G T DCAF15 Nonsense_Mutation p.E484* 0.19 TCGA-F5-6814-01 19 14165822 14165822 T G PALM3 Missense_Mutation p.E206A 0.50 tolerated(0.11) benign(0.011) TCGA-F5-6814-01 19 14513498 14513498 G A CD97 Missense_Mutation p.E425K 0.22 tolerated(0.86) benign(0.009) TCGA-F5-6814-01 19 14518938 14518938 G A CD97 3'UTR 0.40 TCGA-F5-6814-01 19 14674878 14674878 G T TECR Missense_Mutation p.D118Y 0.39 deleterious(0.02) possibly_damaging(0.845) TCGA-F5-6814-01 19 14743798 14743798 G T EMR3 Silent p.V526V 0.17 TCGA-F5-6814-01 19 14827025 14827025 G T ZNF333 Missense_Mutation p.E234D 0.27 deleterious(0.01) possibly_damaging(0.523) TCGA-F5-6814-01 19 14829621 14829621 G T ZNF333 Missense_Mutation p.K494N 0.27 tolerated(0.17) possibly_damaging(0.728) TCGA-F5-6814-01 19 14830153 14830153 A C ZNF333 3'UTR 0.36 TCGA-F5-6814-01 19 14863255 14863255 A G EMR2 Silent p.F558F 0.09 TCGA-F5-6814-01 19 14866674 14866674 C T EMR2 Missense_Mutation p.G403D 0.23 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 19 14910676 14910676 G T OR7C1 Missense_Mutation p.F91L 0.32 tolerated_low_confidence(0.1) benign(0.001) TCGA-F5-6814-01 19 14938582 14938582 G T OR7A5 Missense_Mutation p.L158I 0.12 deleterious_low_confidence(0.04) benign(0.33) TCGA-F5-6814-01 19 15072861 15072861 G A SLC1A6 Silent p.F296F 0.15 TCGA-F5-6814-01 19 15198009 15198009 A G OR1I1 Missense_Mutation p.I45V 0.39 deleterious(0.02) probably_damaging(0.991) TCGA-F5-6814-01 19 15222232 15222232 G A SYDE1 Missense_Mutation p.D467N 0.47 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 19 15234194 15234194 C T ILVBL Missense_Mutation p.R110H 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 15271928 15271928 C T NOTCH3 Missense_Mutation p.D2171N 0.62 tolerated(0.2) benign(0.002) TCGA-F5-6814-01 19 15295796 15295796 C T NOTCH3 Silent p.P777P 0.30 TCGA-F5-6814-01 19 15299127 15299127 C A NOTCH3 Missense_Mutation p.D471Y 0.48 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 19 15338876 15338876 A G EPHX3 Missense_Mutation p.S218P 0.24 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 19 15484055 15484055 G A AKAP8 Silent p.F156F 0.14 TCGA-F5-6814-01 19 15562911 15562911 T C RASAL3 Missense_Mutation p.E946G 0.32 tolerated(0.05) benign(0.001) TCGA-F5-6814-01 19 15733038 15733038 C T CYP4F8 Intron 0.45 TCGA-F5-6814-01 19 15852614 15852614 A C OR10H3 Missense_Mutation p.S138R 0.15 tolerated(0.06) benign(0.005) TCGA-F5-6814-01 19 15852954 15852954 T C OR10H3 Missense_Mutation p.V251A 0.33 deleterious(0.01) benign(0.25) TCGA-F5-6814-01 19 15918909 15918909 C A OR10H1 5'UTR 0.21 TCGA-F5-6814-01 19 16003152 16003152 C A CYP4F2 Missense_Mutation p.M164I 0.16 tolerated(0.1) benign(0.002) TCGA-F5-6814-01 19 16003350 16003350 T G CYP4F2 Missense_Mutation p.E129A 0.11 tolerated(0.09) benign(0.063) TCGA-F5-6814-01 19 16024697 16024697 C T CYP4F11 Missense_Mutation p.A474T 0.75 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 19 16060006 16060006 C A OR10H4 Missense_Mutation p.F63L 0.34 deleterious(0.02) benign(0.076) TCGA-F5-6814-01 19 1622224 1622224 T C TCF3 Splice_Site p.X218_splice 0.32 TCGA-F5-6814-01 19 16528801 16528801 C T EPS15L1 Silent p.S355S 0.10 TCGA-F5-6814-01 19 16589966 16589966 T G CALR3 Missense_Mutation p.Q377H 0.12 deleterious_low_confidence(0.02) benign(0.17) TCGA-F5-6814-01 19 16590075 16590075 C A CALR3 Missense_Mutation p.R341M 0.43 deleterious(0.02) possibly_damaging(0.486) TCGA-F5-6814-01 19 16612024 16612024 G A C19orf44 Missense_Mutation p.E141K 0.36 tolerated(0.49) benign(0.041) TCGA-F5-6814-01 19 16899811 16899811 A C NWD1 Missense_Mutation p.K917T 0.29 deleterious(0.05) benign(0.047) TCGA-F5-6814-01 19 16910929 16910929 A G NWD1 Missense_Mutation p.K1231R 0.30 tolerated(0.33) benign(0.073) TCGA-F5-6814-01 19 16925841 16925841 A G NWD1 Silent p.A1430A 0.42 TCGA-F5-6814-01 19 17062869 17062869 G A CPAMD8 Silent p.F853F 0.22 TCGA-F5-6814-01 19 17086050 17086050 C A CPAMD8 Missense_Mutation p.D690Y 0.35 deleterious(0) possibly_damaging(0.785) TCGA-F5-6814-01 19 17311591 17311591 A G MYO9B Missense_Mutation p.T1506A 0.33 tolerated(0.17) benign(0.049) TCGA-F5-6814-01 19 17370765 17370765 C T USHBP1 Missense_Mutation p.G237S 0.33 tolerated(0.25) benign(0.1) TCGA-F5-6814-01 19 17373594 17373594 G A USHBP1 Missense_Mutation p.R137C 0.26 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 19 17615392 17615392 C T SLC27A1 Missense_Mutation p.R638C 0.50 deleterious(0.01) benign(0.368) TCGA-F5-6814-01 19 17728647 17728647 G A UNC13A Silent p.H1474H 0.22 TCGA-F5-6814-01 19 17768891 17768891 G T UNC13A Missense_Mutation p.F249L 0.23 tolerated_low_confidence(0.28) benign(0) TCGA-F5-6814-01 19 18184347 18184347 G A IL12RB1 Missense_Mutation p.R255W 0.22 deleterious(0.05) possibly_damaging(0.634) TCGA-F5-6814-01 19 18497064 18497064 C A GDF15 Nonsense_Mutation p.S22* 0.34 TCGA-F5-6814-01 19 18507193 18507193 C T LRRC25 Missense_Mutation p.R194Q 0.19 tolerated(0.35) benign(0.002) TCGA-F5-6814-01 19 18897383 18897383 C T COMP Missense_Mutation p.D405N 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6814-01 19 18901950 18901950 A C COMP Intron 0.23 TCGA-F5-6814-01 19 18967770 18967770 G A UPF1 Missense_Mutation p.E637K 0.45 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 19032547 19032547 C T DDX49 Silent p.V105V 0.45 TCGA-F5-6814-01 19 19119195 19119195 A C SUGP2 Missense_Mutation p.F794C 0.16 deleterious(0) possibly_damaging(0.728) TCGA-F5-6814-01 19 19135584 19135584 G A SUGP2 Nonsense_Mutation p.R525* 0.11 TCGA-F5-6814-01 19 19165050 19165050 G A ARMC6 Missense_Mutation p.D315N 0.16 tolerated(0.08) benign(0.081) TCGA-F5-6814-01 19 19206970 19206970 C T SLC25A42 Missense_Mutation p.H13Y 0.26 deleterious(0.04) benign(0.003) TCGA-F5-6814-01 19 19221763 19221763 G A SLC25A42 3'UTR 0.56 TCGA-F5-6814-01 19 19611925 19611925 A G GATAD2A Intron 0.35 TCGA-F5-6814-01 19 19790292 19790292 G A ZNF101 Missense_Mutation p.R165Q 0.60 deleterious(0.03) benign(0.007) TCGA-F5-6814-01 19 1979378 1979378 G A CSNK1G2 Missense_Mutation p.E277K 0.26 tolerated(0.2) probably_damaging(0.995) TCGA-F5-6814-01 19 19822703 19822703 G A ZNF14 Nonsense_Mutation p.R463* 0.24 TCGA-F5-6814-01 19 19823207 19823207 G A ZNF14 Nonsense_Mutation p.R295* 0.33 TCGA-F5-6814-01 19 20044249 20044249 G T ZNF93 Missense_Mutation p.R162I 0.30 deleterious(0.02) benign(0.209) TCGA-F5-6814-01 19 20044339 20044339 A C ZNF93 Missense_Mutation p.K192T 0.31 deleterious(0.03) probably_damaging(0.966) TCGA-F5-6814-01 19 20045014 20045014 G T ZNF93 Missense_Mutation p.R417I 0.26 tolerated(0.4) benign(0.001) TCGA-F5-6814-01 19 20045217 20045217 G T ZNF93 Nonsense_Mutation p.E485* 0.39 TCGA-F5-6814-01 19 20118078 20118078 G A ZNF682 Missense_Mutation p.S78F 0.17 tolerated(0.05) benign(0.228) TCGA-F5-6814-01 19 20228641 20228641 A G ZNF90 Missense_Mutation p.D93G 0.37 deleterious(0.04) possibly_damaging(0.687) TCGA-F5-6814-01 19 20228676 20228676 A C ZNF90 Missense_Mutation p.K105Q 0.38 deleterious(0.02) possibly_damaging(0.816) TCGA-F5-6814-01 19 20727252 20727252 G T ZNF737 3'UTR 0.46 TCGA-F5-6814-01 19 20727843 20727843 C A ZNF737 Missense_Mutation p.R389I 0.33 tolerated(0.43) benign(0.001) TCGA-F5-6814-01 19 20728361 20728361 A G ZNF737 Silent p.L216L 0.16 TCGA-F5-6814-01 19 20975348 20975348 G T ZNF66 Nonsense_Mutation p.E12* 0.28 TCGA-F5-6814-01 19 21131600 21131600 G T ZNF85 Missense_Mutation p.D94Y 0.35 tolerated(0.05) benign(0.111) TCGA-F5-6814-01 19 21131792 21131792 T C ZNF85 Missense_Mutation p.F158L 0.10 tolerated(0.18) benign(0.071) TCGA-F5-6814-01 19 21132153 21132153 T C ZNF85 Missense_Mutation p.I278T 0.29 tolerated(0.51) benign(0.117) TCGA-F5-6814-01 19 21132993 21132993 G T ZNF85 Missense_Mutation p.R558I 0.35 tolerated(0.52) benign(0) TCGA-F5-6814-01 19 21239872 21239872 G T ZNF430 Missense_Mutation p.R253I 0.15 tolerated(0.39) benign(0.057) TCGA-F5-6814-01 19 21266862 21266862 C A ZNF714 5'UTR 0.36 TCGA-F5-6814-01 19 21476077 21476077 T G ZNF708 Nonstop_Mutation p.*564Sext*27 0.37 TCGA-F5-6814-01 19 21605870 21605870 G T ZNF493 Nonsense_Mutation p.E137* 0.23 TCGA-F5-6814-01 19 21606087 21606087 C A ZNF493 Missense_Mutation p.S209Y 0.24 tolerated(0.06) benign(0.202) TCGA-F5-6814-01 19 21606364 21606364 T G ZNF493 Silent p.T301T 0.17 TCGA-F5-6814-01 19 21608066 21608066 A C ZNF493 3'UTR 0.38 TCGA-F5-6814-01 19 21608192 21608192 C A ZNF493 3'UTR 0.20 TCGA-F5-6814-01 19 21609120 21609120 G A ZNF493 3'UTR 0.32 TCGA-F5-6814-01 19 21909579 21909579 G A ZNF100 Missense_Mutation p.S512F 0.31 deleterious(0.02) benign(0.006) TCGA-F5-6814-01 19 21910424 21910424 C A ZNF100 Missense_Mutation p.E230D 0.42 deleterious(0.03) probably_damaging(0.979) TCGA-F5-6814-01 19 21991990 21991990 C A ZNF43 Missense_Mutation p.E283D 0.33 tolerated(0.06) possibly_damaging(0.667) TCGA-F5-6814-01 19 21992174 21992174 C A ZNF43 Missense_Mutation p.R222I 0.44 tolerated(0.24) benign(0.07) TCGA-F5-6814-01 19 21992369 21992369 T G ZNF43 Missense_Mutation p.K157T 0.31 tolerated(0.09) benign(0.115) TCGA-F5-6814-01 19 2213842 2213842 C T DOT1L Intron 0.33 TCGA-F5-6814-01 19 22154223 22154223 C T ZNF208 Missense_Mutation p.A1205T 0.33 tolerated(0.16) possibly_damaging(0.537) TCGA-F5-6814-01 19 22155857 22155857 G A ZNF208 Missense_Mutation p.A660V 0.22 deleterious(0) benign(0.006) TCGA-F5-6814-01 19 22157370 22157370 T G ZNF208 Missense_Mutation p.K156Q 0.14 tolerated(0.34) benign(0.382) TCGA-F5-6814-01 19 22157428 22157428 A G ZNF208 Silent p.S136S 0.28 TCGA-F5-6814-01 19 22270815 22270815 A G ZNF257 Missense_Mutation p.E88G 0.20 deleterious(0.05) possibly_damaging(0.802) TCGA-F5-6814-01 19 22271230 22271230 G T ZNF257 Missense_Mutation p.E226D 0.38 tolerated(0.06) benign(0.054) TCGA-F5-6814-01 19 22271447 22271447 G A ZNF257 Missense_Mutation p.A299T 0.15 tolerated(0.72) benign(0.446) TCGA-F5-6814-01 19 22271475 22271475 G T ZNF257 Missense_Mutation p.R308I 0.42 tolerated(0.57) benign(0.057) TCGA-F5-6814-01 19 22271763 22271763 A G ZNF257 Missense_Mutation p.E404G 0.24 deleterious(0) probably_damaging(0.962) TCGA-F5-6814-01 19 22362742 22362742 C A ZNF676 3'UTR 0.35 TCGA-F5-6814-01 19 22364021 22364021 C A ZNF676 Missense_Mutation p.E166D 0.10 deleterious(0.05) benign(0.094) TCGA-F5-6814-01 19 2243439 2243439 G A SF3A2 Missense_Mutation p.G8R 0.57 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F5-6814-01 19 2243468 2243468 C A SF3A2 Silent p.A17A 0.62 TCGA-F5-6814-01 19 22574996 22574996 C A ZNF98 Missense_Mutation p.E347D 0.38 deleterious(0.02) benign(0.156) TCGA-F5-6814-01 19 22846783 22846783 T C ZNF492 Silent p.C104C 0.15 TCGA-F5-6814-01 19 22847457 22847457 G A ZNF492 Missense_Mutation p.R329K 0.33 tolerated(0.45) benign(0.139) TCGA-F5-6814-01 19 22847557 22847557 G T ZNF492 Missense_Mutation p.E362D 0.19 deleterious(0.02) benign(0.011) TCGA-F5-6814-01 19 22939471 22939471 G T ZNF99 3'Flank 0.30 TCGA-F5-6814-01 19 22940502 22940502 C T ZNF99 Missense_Mutation p.E737K 0.45 tolerated(0.06) possibly_damaging(0.814) TCGA-F5-6814-01 19 22941641 22941641 C A ZNF99 Missense_Mutation p.R357I 0.29 tolerated(0.27) benign(0.349) TCGA-F5-6814-01 19 22942226 22942226 C A ZNF99 Missense_Mutation p.R162I 0.33 tolerated(0.05) possibly_damaging(0.717) TCGA-F5-6814-01 19 23159422 23159422 C A ZNF728 Missense_Mutation p.K239N 0.24 tolerated(0.32) benign(0.005) TCGA-F5-6814-01 19 23159812 23159812 C A ZNF728 Missense_Mutation p.E109D 0.26 tolerated(0.28) benign(0.21) TCGA-F5-6814-01 19 23316912 23316912 G T ZNF730 Nonsense_Mutation p.E12* 0.11 TCGA-F5-6814-01 19 2334652 2334652 G A AC004410.3 3'Flank 0.27 TCGA-F5-6814-01 19 23543832 23543832 C T ZNF91 Missense_Mutation p.R650K 0.33 tolerated(0.34) possibly_damaging(0.676) TCGA-F5-6814-01 19 23544087 23544087 T G ZNF91 Missense_Mutation p.K565T 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-F5-6814-01 19 23544336 23544336 C A ZNF91 Missense_Mutation p.R482M 0.32 deleterious(0.01) possibly_damaging(0.887) TCGA-F5-6814-01 19 23545473 23545473 G T ZNF91 Missense_Mutation p.S103Y 0.40 deleterious(0.01) possibly_damaging(0.809) TCGA-F5-6814-01 19 23835964 23835964 G T ZNF675 3'UTR 0.19 TCGA-F5-6814-01 19 24309326 24309326 G A ZNF254 Missense_Mutation p.R175K 0.38 tolerated(0.12) benign(0.03) TCGA-F5-6814-01 19 2717274 2717274 G A DIRAS1 Silent p.I177I 0.23 TCGA-F5-6814-01 19 2737324 2737324 G A SLC39A3 5'UTR 0.41 TCGA-F5-6814-01 19 2853046 2853046 G A ZNF555 Missense_Mutation p.R328Q 0.34 tolerated(0.33) benign(0.023) TCGA-F5-6814-01 19 2853266 2853266 C T ZNF555 Silent p.C401C 0.41 TCGA-F5-6814-01 19 2853805 2853805 G A ZNF555 Missense_Mutation p.R581Q 0.09 tolerated(0.13) possibly_damaging(0.704) TCGA-F5-6814-01 19 2877344 2877344 C T ZNF556 Nonsense_Mutation p.R130* 0.41 TCGA-F5-6814-01 19 2994090 2994090 C A TLE6 Missense_Mutation p.F537L 0.35 tolerated(0.24) benign(0.004) TCGA-F5-6814-01 19 30496288 30496288 G T URI1 Missense_Mutation p.D130Y 0.31 deleterious(0) probably_damaging(0.934) TCGA-F5-6814-01 19 30503303 30503303 A C URI1 Missense_Mutation p.E430D 0.12 tolerated(0.89) benign(0.009) TCGA-F5-6814-01 19 31039498 31039498 C T ZNF536 Missense_Mutation p.S991L 0.18 deleterious(0.01) benign(0.098) TCGA-F5-6814-01 19 31040415 31040415 T G ZNF536 Missense_Mutation p.L1297V 0.24 tolerated_low_confidence(0.28) benign(0.327) TCGA-F5-6814-01 19 31769473 31769473 C T TSHZ3 Missense_Mutation p.G409D 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 31770203 31770203 C T TSHZ3 Missense_Mutation p.D166N 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 19 3179749 3179749 G A S1PR4 Missense_Mutation p.S320N 0.39 tolerated(0.47) benign(0.03) TCGA-F5-6814-01 19 32873461 32873461 G A ZNF507 Missense_Mutation p.E817K 0.15 deleterious(0) possibly_damaging(0.905) TCGA-F5-6814-01 19 32902272 32902272 T C DPY19L3 Silent p.N77N 0.32 TCGA-F5-6814-01 19 32949012 32949012 C A DPY19L3 Missense_Mutation p.L366I 0.10 tolerated(0.24) benign(0.17) TCGA-F5-6814-01 19 33350776 33350776 C A SLC7A9 Nonsense_Mutation p.E282* 0.27 TCGA-F5-6814-01 19 33870870 33870870 G A CEBPG 3'UTR 0.27 TCGA-F5-6814-01 19 33873042 33873042 A C CEBPG 3'UTR 0.38 TCGA-F5-6814-01 19 33892769 33892769 G A PEPD Silent p.F275F 0.19 TCGA-F5-6814-01 19 34710358 34710358 T G LSM14A Missense_Mutation p.F282V 0.13 tolerated(0.64) benign(0.051) TCGA-F5-6814-01 19 34832796 34832796 C A KIAA0355 Missense_Mutation p.L653I 0.38 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-F5-6814-01 19 34890882 34890882 G A GPI Missense_Mutation p.A551T 0.21 deleterious_low_confidence(0.03) benign(0.228) TCGA-F5-6814-01 19 34984198 34984198 T G WTIP Missense_Mutation p.C290G 0.16 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 19 35175604 35175604 G T ZNF302 Missense_Mutation p.R221I 0.35 deleterious(0.01) possibly_damaging(0.783) TCGA-F5-6814-01 19 35249832 35249832 C A ZNF599 3'UTR 0.35 TCGA-F5-6814-01 19 35251141 35251141 C A ZNF599 Missense_Mutation p.D189Y 0.18 deleterious(0.04) possibly_damaging(0.62) TCGA-F5-6814-01 19 35610126 35610126 C T FXYD3 Missense_Mutation p.A43V 0.13 deleterious_low_confidence(0.01) benign(0.104) TCGA-F5-6814-01 19 35757270 35757270 G A LSR Missense_Mutation p.A311T 0.62 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 19 35758635 35758635 A C LSR Missense_Mutation p.K638Q 0.45 tolerated(0.05) possibly_damaging(0.804) TCGA-F5-6814-01 19 35829199 35829199 G T CD22 Nonsense_Mutation p.E372* 0.41 TCGA-F5-6814-01 19 35837061 35837061 G T CD22 Nonsense_Mutation p.E779* 0.29 TCGA-F5-6814-01 19 35849846 35849846 C A FFAR3 Missense_Mutation p.F18L 0.18 tolerated(0.98) benign(0.002) TCGA-F5-6814-01 19 35850237 35850237 G A FFAR3 Missense_Mutation p.V149M 0.17 deleterious(0) probably_damaging(0.917) TCGA-F5-6814-01 19 36003376 36003376 C T DMKN Missense_Mutation p.A211T 0.23 tolerated(0.84) possibly_damaging(0.836) TCGA-F5-6814-01 19 36004023 36004023 C A DMKN Missense_Mutation p.D119Y 0.39 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 19 36228800 36228800 C T KMT2B Missense_Mutation p.R2567C 0.18 possibly_damaging(0.893) TCGA-F5-6814-01 19 36232000 36232000 G A IGFLR1 Missense_Mutation p.R28C 0.28 deleterious(0.02) possibly_damaging(0.649) TCGA-F5-6814-01 19 36245325 36245325 C T LIN37 Missense_Mutation p.R231C 0.48 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 19 36349740 36349740 C A KIRREL2 Missense_Mutation p.L166M 0.09 tolerated(0.07) possibly_damaging(0.836) TCGA-F5-6814-01 19 36545112 36545112 T G THAP8 Missense_Mutation p.K3T 0.32 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 19 36604944 36604944 G A POLR2I Silent p.F96F 0.49 TCGA-F5-6814-01 19 36727559 36727559 G A ZNF146 Missense_Mutation p.E73K 0.27 tolerated(0.53) benign(0.002) TCGA-F5-6814-01 19 36728262 36728262 G T ZNF146 3'UTR 0.18 TCGA-F5-6814-01 19 37004774 37004774 A C ZNF260 3'UTR 0.44 TCGA-F5-6814-01 19 37037878 37037878 G T ZNF529 Missense_Mutation p.H528N 0.44 deleterious(0) benign(0.208) TCGA-F5-6814-01 19 37117067 37117067 T A ZNF382 Missense_Mutation p.F90I 0.11 tolerated(0.52) benign(0.006) TCGA-F5-6814-01 19 37117662 37117662 G T ZNF382 Missense_Mutation p.R288I 0.25 deleterious(0) benign(0.318) TCGA-F5-6814-01 19 37130603 37130603 G T ZNF461 Missense_Mutation p.S215Y 0.07 deleterious(0) probably_damaging(0.913) TCGA-F5-6814-01 19 37130912 37130912 G T ZNF461 Missense_Mutation p.S112Y 0.33 tolerated(0.28) benign(0.055) TCGA-F5-6814-01 19 37211536 37211536 G T ZNF567 Missense_Mutation p.R606I 0.42 deleterious(0.01) benign(0.002) TCGA-F5-6814-01 19 37309564 37309564 G T ZNF790 Missense_Mutation p.P561H 0.25 deleterious(0.01) benign(0.343) TCGA-F5-6814-01 19 37309581 37309581 A G ZNF790 Silent p.I555I 0.10 TCGA-F5-6814-01 19 37309847 37309847 G A ZNF790 Nonsense_Mutation p.R467* 0.14 TCGA-F5-6814-01 19 37310928 37310928 A C ZNF790 Missense_Mutation p.I106M 0.33 tolerated(0.25) benign(0.012) TCGA-F5-6814-01 19 3733794 3733794 G A TJP3 Missense_Mutation p.R263Q 0.09 tolerated(0.37) possibly_damaging(0.566) TCGA-F5-6814-01 19 37367967 37367967 C T ZNF345 Nonsense_Mutation p.R79* 0.31 TCGA-F5-6814-01 19 37368202 37368202 T G ZNF345 Missense_Mutation p.F157C 0.11 tolerated(0.21) benign(0.001) TCGA-F5-6814-01 19 37368516 37368516 G T ZNF345 Nonsense_Mutation p.E262* 0.24 TCGA-F5-6814-01 19 37369069 37369069 G A ZNF345 Missense_Mutation p.R446K 0.08 tolerated(0.06) benign(0) TCGA-F5-6814-01 19 37382662 37382662 C A ZNF829 Missense_Mutation p.R425I 0.14 deleterious(0.03) probably_damaging(0.977) TCGA-F5-6814-01 19 37581901 37581901 T G ZNF420 Nonsense_Mutation p.L5* 0.20 TCGA-F5-6814-01 19 37643932 37643932 C A ZNF585A Missense_Mutation p.R235I 0.14 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 19 37644460 37644460 T G ZNF585A Missense_Mutation p.K59T 0.08 tolerated(0.13) benign(0.253) TCGA-F5-6814-01 19 37644487 37644487 T G ZNF585A Missense_Mutation p.N50T 0.38 tolerated(0.25) benign(0.003) TCGA-F5-6814-01 19 37677384 37677384 T G ZNF585B Missense_Mutation p.K352T 0.15 deleterious(0) possibly_damaging(0.641) TCGA-F5-6814-01 19 37677689 37677689 C T ZNF585B Silent p.A250A 0.34 TCGA-F5-6814-01 19 3778120 3778120 C T MATK 3'UTR 0.27 TCGA-F5-6814-01 19 37961251 37961251 G T ZNF570 5'UTR 0.15 TCGA-F5-6814-01 19 37975138 37975138 C T ZNF570 Missense_Mutation p.A205V 0.36 tolerated(1) benign(0) TCGA-F5-6814-01 19 37975825 37975825 G T ZNF570 Missense_Mutation p.R434I 0.35 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 19 38055925 38055925 G T ZNF571 Missense_Mutation p.H469N 0.37 deleterious(0.03) possibly_damaging(0.664) TCGA-F5-6814-01 19 38103553 38103553 C A ZNF540 Missense_Mutation p.Q458K 0.23 tolerated(0.06) benign(0.224) TCGA-F5-6814-01 19 38126825 38126825 C A ZFP30 Missense_Mutation p.R206I 0.29 deleterious(0.03) probably_damaging(0.992) TCGA-F5-6814-01 19 38160458 38160458 T G ZNF781 Silent p.R198R 0.29 TCGA-F5-6814-01 19 38160733 38160733 C T ZNF781 Missense_Mutation p.R106Q 0.27 tolerated(0.53) benign(0.083) TCGA-F5-6814-01 19 38161054 38161054 A C ZNF781 5'UTR 0.08 TCGA-F5-6814-01 19 38161114 38161114 A T ZNF781 5'UTR 0.38 TCGA-F5-6814-01 19 38187906 38187906 C T ZNF607 3'UTR 0.50 TCGA-F5-6814-01 19 38189626 38189626 C A ZNF607 Missense_Mutation p.R469I 0.33 deleterious(0.03) possibly_damaging(0.829) TCGA-F5-6814-01 19 38190742 38190742 T G ZNF607 Missense_Mutation p.K97T 0.09 tolerated(0.15) benign(0.076) TCGA-F5-6814-01 19 38198902 38198902 C T ZNF607 Missense_Mutation p.V50I 0.09 tolerated(0.75) benign(0) TCGA-F5-6814-01 19 38229551 38229551 C A ZNF573 Nonsense_Mutation p.E614* 0.20 TCGA-F5-6814-01 19 38230212 38230212 C A ZNF573 Missense_Mutation p.K393N 0.27 deleterious(0) possibly_damaging(0.586) TCGA-F5-6814-01 19 38376699 38376699 T C WDR87 Missense_Mutation p.M2499V 0.16 unknown(0) TCGA-F5-6814-01 19 38377603 38377603 C T WDR87 Nonsense_Mutation p.W2197* 0.37 TCGA-F5-6814-01 19 38378250 38378250 C A WDR87 Nonsense_Mutation p.E1982* 0.35 TCGA-F5-6814-01 19 38378410 38378410 C A WDR87 Missense_Mutation p.E1928D 0.38 benign(0.063) TCGA-F5-6814-01 19 38378690 38378690 T C WDR87 Missense_Mutation p.Q1835R 0.25 benign(0.313) TCGA-F5-6814-01 19 38378893 38378893 C A WDR87 Missense_Mutation p.E1767D 0.38 benign(0.06) TCGA-F5-6814-01 19 38378987 38378987 T G WDR87 Missense_Mutation p.N1736T 0.08 benign(0.031) TCGA-F5-6814-01 19 38379079 38379079 T G WDR87 Missense_Mutation p.Q1705H 0.08 possibly_damaging(0.73) TCGA-F5-6814-01 19 38379226 38379226 C T WDR87 Silent p.E1656E 0.38 TCGA-F5-6814-01 19 38379618 38379618 C T WDR87 Missense_Mutation p.E1526K 0.30 probably_damaging(0.996) TCGA-F5-6814-01 19 38380740 38380740 C A WDR87 Missense_Mutation p.D1152Y 0.38 probably_damaging(0.972) TCGA-F5-6814-01 19 38385934 38385934 A C WDR87 Missense_Mutation p.F98V 0.32 possibly_damaging(0.901) TCGA-F5-6814-01 19 38707032 38707032 C A DPF1 Nonsense_Mutation p.E274* 0.42 TCGA-F5-6814-01 19 38742056 38742056 G T PPP1R14A Missense_Mutation p.Q116K 0.33 tolerated(0.1) benign(0.003) TCGA-F5-6814-01 19 38900675 38900675 G T RASGRP4 3'UTR 0.19 TCGA-F5-6814-01 19 38924464 38924464 G A RYR1 5'Flank 0.35 TCGA-F5-6814-01 19 38951199 38951199 G A RYR1 Missense_Mutation p.D849N 0.16 benign(0.19) TCGA-F5-6814-01 19 38960071 38960071 A C RYR1 Missense_Mutation p.N1228T 0.24 probably_damaging(0.926) TCGA-F5-6814-01 19 38990388 38990388 G A RYR1 Missense_Mutation p.E2381K 0.44 benign(0.046) TCGA-F5-6814-01 19 38995985 38995985 G A RYR1 Missense_Mutation p.E2783K 0.30 benign(0.041) TCGA-F5-6814-01 19 39001196 39001196 C A RYR1 Missense_Mutation p.F2997L 0.27 benign(0.007) TCGA-F5-6814-01 19 39013725 39013725 C T RYR1 Silent p.G3439G 0.50 TCGA-F5-6814-01 19 39103274 39103274 C T MAP4K1 Silent p.P214P 0.30 TCGA-F5-6814-01 19 3917743 3917743 C T ATCAY Silent p.Y323Y 0.37 TCGA-F5-6814-01 19 39196748 39196748 C A ACTN4 Silent p.V183V 0.12 TCGA-F5-6814-01 19 39292541 39292541 G A LGALS4 Missense_Mutation p.R279C 0.53 deleterious(0) possibly_damaging(0.724) TCGA-F5-6814-01 19 39336704 39336704 C T HNRNPL Missense_Mutation p.R138K 0.61 tolerated(0.09) probably_damaging(0.992) TCGA-F5-6814-01 19 39360254 39360254 A G RINL Missense_Mutation p.F478S 0.51 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 19 39369801 39369801 G T SIRT2 Silent p.P388P 0.12 TCGA-F5-6814-01 19 39819516 39819516 C A GMFG Intron 0.33 TCGA-F5-6814-01 19 3982283 3982283 T G EEF2 Missense_Mutation p.K251T 0.48 deleterious(0) benign(0.243) TCGA-F5-6814-01 19 39879064 39879064 T G PAF1 Missense_Mutation p.N301H 0.25 deleterious(0) possibly_damaging(0.876) TCGA-F5-6814-01 19 39880746 39880746 C T PAF1 Missense_Mutation p.D45N 0.38 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 19 39881501 39881501 C T PAF1 Missense_Mutation p.A2T 0.12 tolerated(0.11) benign(0.135) TCGA-F5-6814-01 19 39967011 39967011 G A SUPT5H Missense_Mutation p.R1079H 0.24 tolerated(0.06) benign(0.006) TCGA-F5-6814-01 19 39998484 39998484 G T DLL3 Missense_Mutation p.W563L 0.25 deleterious(0.01) probably_damaging(0.986) TCGA-F5-6814-01 19 39998560 39998560 G A DLL3 Silent p.A588A 0.41 TCGA-F5-6814-01 19 40023155 40023155 G A EID2B Silent p.F96F 0.40 TCGA-F5-6814-01 19 40030099 40030099 A C EID2 Missense_Mutation p.I207M 0.52 tolerated(0.05) benign(0.354) TCGA-F5-6814-01 19 40149211 40149211 G T LGALS16 Missense_Mutation p.E68D 0.19 tolerated(0.08) benign(0.021) TCGA-F5-6814-01 19 40197889 40197889 G A LGALS14 Missense_Mutation p.R84Q 0.12 tolerated(0.33) benign(0.34) TCGA-F5-6814-01 19 40228611 40228611 G T CLC 5'UTR 0.09 TCGA-F5-6814-01 19 40318989 40318989 C T DYRK1B Missense_Mutation p.R252H 0.21 deleterious(0.02) possibly_damaging(0.756) TCGA-F5-6814-01 19 40325155 40325155 C T FBL 3'UTR 0.50 TCGA-F5-6814-01 19 40357533 40357533 C A FCGBP Missense_Mutation p.E5260D 0.42 benign(0.405) TCGA-F5-6814-01 19 40433492 40433492 G T FCGBP Silent p.S259S 0.50 TCGA-F5-6814-01 19 40487341 40487341 C T PSMC4 3'UTR 0.50 TCGA-F5-6814-01 19 40519829 40519829 G T ZNF546 Nonsense_Mutation p.E218* 0.35 TCGA-F5-6814-01 19 40521805 40521805 A C ZNF546 3'UTR 0.36 TCGA-F5-6814-01 19 40538261 40538261 C T ZNF780B 3'UTR 0.38 TCGA-F5-6814-01 19 40554602 40554602 C A ZNF780B Missense_Mutation p.E37D 0.33 deleterious(0.04) possibly_damaging(0.523) TCGA-F5-6814-01 19 40698290 40698290 C T MAP3K10 Missense_Mutation p.R118C 0.19 deleterious(0) possibly_damaging(0.873) TCGA-F5-6814-01 19 40728891 40728891 C A CNTD2 3'UTR 0.54 TCGA-F5-6814-01 19 40729051 40729051 G T CNTD2 Missense_Mutation p.L278I 0.44 tolerated_low_confidence(0.39) benign(0.017) TCGA-F5-6814-01 19 40885648 40885648 C T HIPK4 Missense_Mutation p.S566N 0.38 tolerated_low_confidence(0.3) benign(0.002) TCGA-F5-6814-01 19 41117110 41117110 G T LTBP4 Missense_Mutation p.K688N 0.40 tolerated(0.09) benign(0.085) TCGA-F5-6814-01 19 41383164 41383164 G A CYP2A7 Silent p.D364D 0.42 TCGA-F5-6814-01 19 41442151 41442151 C A CYP2B7P RNA 0.21 TCGA-F5-6814-01 19 41497376 41497376 C T CYP2B6 Silent p.L56L 0.14 TCGA-F5-6814-01 19 41782157 41782157 G A HNRNPUL1 Missense_Mutation p.R247H 0.29 deleterious(0) unknown(0) TCGA-F5-6814-01 19 41807556 41807556 G A HNRNPUL1 Missense_Mutation p.R545Q 0.21 tolerated(0.23) unknown(0) TCGA-F5-6814-01 19 42133268 42133268 C T CEACAM4 Missense_Mutation p.A22T 0.33 deleterious(0.01) possibly_damaging(0.823) TCGA-F5-6814-01 19 42300598 42300598 G A CEACAM3 5'UTR 0.10 TCGA-F5-6814-01 19 42485693 42485693 T G ATP1A3 Missense_Mutation p.K479N 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 19 42510035 42510035 G A GRIK5 Silent p.F701F 0.09 TCGA-F5-6814-01 19 42583609 42583609 T C ZNF574 Missense_Mutation p.I284T 0.29 tolerated(0.4) benign(0.001) TCGA-F5-6814-01 19 42584081 42584081 G A ZNF574 Silent p.E441E 0.30 TCGA-F5-6814-01 19 42730716 42730716 G A ZNF526 3'UTR 0.38 TCGA-F5-6814-01 19 42744232 42744232 C A AC006486.9 Nonsense_Mutation p.E29* 0.41 TCGA-F5-6814-01 19 42841298 42841298 C T MEGF8 Missense_Mutation p.H485Y 0.33 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 19 43016517 43016517 A G CEACAM1 Missense_Mutation p.F454S 0.11 tolerated(0.48) probably_damaging(0.91) TCGA-F5-6814-01 19 43228122 43228122 A C PSG3 3'UTR 0.12 TCGA-F5-6814-01 19 43233507 43233507 A G PSG3 Silent p.I337I 0.32 TCGA-F5-6814-01 19 4324072 4324072 G T STAP2 3'UTR 0.50 TCGA-F5-6814-01 19 43348617 43348617 G T PSG10P RNA 0.37 TCGA-F5-6814-01 19 43348700 43348700 A C PSG10P RNA 0.25 TCGA-F5-6814-01 19 43371798 43371798 C A PSG1 3'UTR 0.36 TCGA-F5-6814-01 19 43411078 43411078 G T PSG6 Silent p.V412V 0.40 TCGA-F5-6814-01 19 43420406 43420406 C A PSG6 Missense_Mutation p.V100L 0.13 tolerated(0.13) benign(0.042) TCGA-F5-6814-01 19 43568621 43568621 C A PSG2 3'UTR 0.33 TCGA-F5-6814-01 19 43570706 43570706 C T PSG2 3'UTR 0.23 TCGA-F5-6814-01 19 43672045 43672045 C A PSG5 Intron 0.57 TCGA-F5-6814-01 19 4409114 4409114 C T CHAF1A Silent p.I106I 0.35 TCGA-F5-6814-01 19 44117199 44117199 G T SRRM5 Missense_Mutation p.R309I 0.15 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 19 44150698 44150698 G A PLAUR 3'Flank 0.36 TCGA-F5-6814-01 19 4422572 4422572 C T CHAF1A Missense_Mutation p.R343C 0.44 deleterious(0) unknown(0) TCGA-F5-6814-01 19 44351153 44351153 A C ZNF283 Missense_Mutation p.N134H 0.10 tolerated(0.1) benign(0.003) TCGA-F5-6814-01 19 44423804 44423804 C A ZNF45 Missense_Mutation p.E21D 0.53 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 19 44470559 44470559 G T ZNF221 Missense_Mutation p.R302I 0.38 deleterious(0.01) possibly_damaging(0.856) TCGA-F5-6814-01 19 44570436 44570436 A C ZNF223 Missense_Mutation p.K152T 0.17 tolerated(0.06) benign(0.023) TCGA-F5-6814-01 19 44570738 44570738 T G ZNF223 Missense_Mutation p.L253V 0.25 tolerated(1) possibly_damaging(0.557) TCGA-F5-6814-01 19 44590299 44590299 G T ZNF284 Missense_Mutation p.R223I 0.34 deleterious(0.01) probably_damaging(0.967) TCGA-F5-6814-01 19 44591139 44591139 G T ZNF284 Missense_Mutation p.R503I 0.12 deleterious(0.03) probably_damaging(0.939) TCGA-F5-6814-01 19 44611769 44611769 T C ZNF224 Missense_Mutation p.C486R 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 44679925 44679925 G T ZNF226 Missense_Mutation p.Q170H 0.30 tolerated(0.05) benign(0.003) TCGA-F5-6814-01 19 44681739 44681739 G T ZNF226 Missense_Mutation p.R775I 0.31 deleterious(0.03) benign(0.149) TCGA-F5-6814-01 19 44739561 44739561 C T ZNF227 Silent p.C326C 0.15 TCGA-F5-6814-01 19 44778756 44778756 A G ZNF233 Missense_Mutation p.Y648C 0.11 deleterious(0) benign(0.082) TCGA-F5-6814-01 19 44831531 44831531 T G ZNF112 3'UTR 0.48 TCGA-F5-6814-01 19 44831654 44831654 C T ZNF112 Missense_Mutation p.E892K 0.33 tolerated(0.2) benign(0.288) TCGA-F5-6814-01 19 44832344 44832344 C T ZNF112 Missense_Mutation p.E662K 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6814-01 19 44891587 44891587 C A ZNF285 Missense_Mutation p.D274Y 0.10 tolerated(1) benign(0.001) TCGA-F5-6814-01 19 44892079 44892079 C A ZNF285 Nonsense_Mutation p.E110* 0.41 TCGA-F5-6814-01 19 4491579 4491579 G A HDGFRP2 Missense_Mutation p.R169Q 0.19 deleterious(0.02) benign(0.417) TCGA-F5-6814-01 19 44932959 44932959 C T ZNF229 Missense_Mutation p.R666K 0.11 tolerated(0.07) possibly_damaging(0.554) TCGA-F5-6814-01 19 44933874 44933874 T G ZNF229 Missense_Mutation p.K361T 0.46 tolerated(0.09) benign(0.033) TCGA-F5-6814-01 19 44934086 44934086 C A ZNF229 Missense_Mutation p.E290D 0.18 tolerated(0.1) benign(0.187) TCGA-F5-6814-01 19 4512595 4512595 C A PLIN4 Missense_Mutation p.K445N 0.34 deleterious(0) probably_damaging(0.917) TCGA-F5-6814-01 19 45389454 45389454 C T PVRL2 Missense_Mutation p.A442V 0.22 tolerated(0.08) benign(0.02) TCGA-F5-6814-01 19 45411204 45411204 A G APOE Silent p.E77E 0.36 TCGA-F5-6814-01 19 4552519 4552519 A C SEMA6B Missense_Mutation p.F302V 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 45667487 45667487 C A TRAPPC6A Missense_Mutation p.D111Y 0.31 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 45768135 45768135 G T MARK4 Missense_Mutation p.M153I 0.11 deleterious(0.04) benign(0.002) TCGA-F5-6814-01 19 45769490 45769490 C T MARK4 Missense_Mutation p.S167L 0.28 deleterious(0) probably_damaging(0.922) TCGA-F5-6814-01 19 46029444 46029444 A G VASP 3'UTR 0.12 TCGA-F5-6814-01 19 46269295 46269295 T C SIX5 Missense_Mutation p.I562V 0.30 tolerated(0.12) benign(0.049) TCGA-F5-6814-01 19 46305454 46305454 C A RSPH6A Missense_Mutation p.E574D 0.27 tolerated(0.11) possibly_damaging(0.524) TCGA-F5-6814-01 19 46404855 46404855 G A MYPOP Silent p.I59I 0.40 TCGA-F5-6814-01 19 46443211 46443211 G A NOVA2 Silent p.P463P 0.44 TCGA-F5-6814-01 19 46800359 46800359 G T HIF3A Missense_Mutation p.R9M 0.37 deleterious(0) probably_damaging(0.935) TCGA-F5-6814-01 19 4684717 4684717 A G DPP9 Silent p.C712C 0.33 TCGA-F5-6814-01 19 46915232 46915232 T G CCDC8 Missense_Mutation p.K279T 0.41 possibly_damaging(0.774) TCGA-F5-6814-01 19 47234005 47234005 T C STRN4 Missense_Mutation p.K288R 0.12 tolerated(0.37) benign(0.002) TCGA-F5-6814-01 19 47424101 47424101 A C ARHGAP35 Missense_Mutation p.Q723H 0.38 tolerated(0.05) probably_damaging(0.979) TCGA-F5-6814-01 19 47424786 47424786 C A ARHGAP35 Missense_Mutation p.H952N 0.24 deleterious(0.03) probably_damaging(0.994) TCGA-F5-6814-01 19 47424921 47424921 C T ARHGAP35 Nonsense_Mutation p.R997* 0.08 TCGA-F5-6814-01 19 474729 474729 C T ODF3L2 Missense_Mutation p.D7N 0.19 tolerated_low_confidence(0.28) benign(0.004) TCGA-F5-6814-01 19 48024427 48024427 C T ZNF541 3'UTR 0.32 TCGA-F5-6814-01 19 48041688 48041688 C A ZNF541 Missense_Mutation p.E954D 0.37 tolerated(0.17) benign(0.016) TCGA-F5-6814-01 19 48047949 48047949 C T ZNF541 Missense_Mutation p.A613T 0.50 tolerated(0.29) benign(0.003) TCGA-F5-6814-01 19 48197860 48197860 A C GLTSCR1 Silent p.P924P 0.17 TCGA-F5-6814-01 19 48244273 48244273 G A EHD2 Missense_Mutation p.E406K 0.20 tolerated(0.65) benign(0.012) TCGA-F5-6814-01 19 48284573 48284573 A C SEPW1 Missense_Mutation p.E70D 0.31 tolerated(0.48) benign(0.022) TCGA-F5-6814-01 19 4839228 4839228 C A PLIN3 Missense_Mutation p.E427D 0.32 deleterious(0.05) possibly_damaging(0.456) TCGA-F5-6814-01 19 48517452 48517452 C A ELSPBP1 Missense_Mutation p.P32H 0.56 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 48523027 48523027 G T ELSPBP1 Missense_Mutation p.R136I 0.45 deleterious(0.01) possibly_damaging(0.876) TCGA-F5-6814-01 19 48537596 48537596 C A CABP5 Missense_Mutation p.E124D 0.20 tolerated(0.19) benign(0.006) TCGA-F5-6814-01 19 48543980 48543980 G A CABP5 Silent p.F40F 0.16 TCGA-F5-6814-01 19 48601402 48601402 C T PLA2G4C Missense_Mutation p.A198T 0.32 tolerated(0.77) benign(0.013) TCGA-F5-6814-01 19 48603052 48603052 C T PLA2G4C Missense_Mutation p.R118Q 0.27 tolerated(0.09) possibly_damaging(0.742) TCGA-F5-6814-01 19 48608667 48608667 C A PLA2G4C Nonsense_Mutation p.E25* 0.40 TCGA-F5-6814-01 19 48989036 48989036 C A LMTK3 Missense_Mutation p.E1488D 0.32 unknown(0) TCGA-F5-6814-01 19 49102444 49102444 C T SULT2B1 Silent p.F293F 0.41 TCGA-F5-6814-01 19 49218675 49218675 C A MAMSTR Missense_Mutation p.R90M 0.17 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-F5-6814-01 19 49245061 49245061 T C IZUMO1 Missense_Mutation p.N247D 0.39 tolerated(0.1) benign(0.18) TCGA-F5-6814-01 19 49246723 49246723 G A IZUMO1 Nonsense_Mutation p.R160* 0.16 TCGA-F5-6814-01 19 49249140 49249140 G A IZUMO1 5'UTR 0.50 TCGA-F5-6814-01 19 49469098 49469098 G T FTL Missense_Mutation p.E58D 0.47 deleterious(0.01) benign(0.03) TCGA-F5-6814-01 19 49878079 49878079 C T DKKL1 Missense_Mutation p.P175S 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 19 49949674 49949674 T G PIH1D1 Missense_Mutation p.M280L 0.22 tolerated(0.52) benign(0.003) TCGA-F5-6814-01 19 49963000 49963000 C T ALDH16A1 Nonsense_Mutation p.R132* 0.28 TCGA-F5-6814-01 19 50060149 50060149 T C NOSIP Missense_Mutation p.T174A 0.11 tolerated(0.32) benign(0.008) TCGA-F5-6814-01 19 50156006 50156006 A G SCAF1 Missense_Mutation p.D787G 0.30 unknown(0) TCGA-F5-6814-01 19 50208007 50208007 G A CPT1C Missense_Mutation p.R245Q 0.24 deleterious(0) possibly_damaging(0.908) TCGA-F5-6814-01 19 50214099 50214099 G T CPT1C Missense_Mutation p.E617D 0.14 tolerated(0.48) benign(0.058) TCGA-F5-6814-01 19 50462150 50462150 T G SIGLEC11 Missense_Mutation p.E371D 0.36 tolerated(0.06) benign(0.126) TCGA-F5-6814-01 19 50491687 50491687 A G VRK3 Missense_Mutation p.F387L 0.23 tolerated(0.66) benign(0.008) TCGA-F5-6814-01 19 50550032 50550032 A G ZNF473 Missense_Mutation p.R778G 0.29 tolerated(0.05) possibly_damaging(0.647) TCGA-F5-6814-01 19 50865330 50865330 A G NAPSA Missense_Mutation p.I82T 0.38 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 19 50946805 50946805 G A MYBPC2 Silent p.T319T 0.16 TCGA-F5-6814-01 19 50949227 50949227 C A MYBPC2 Missense_Mutation p.F408L 0.45 deleterious(0.02) benign(0.016) TCGA-F5-6814-01 19 50958775 50958775 A G MYBPC2 Missense_Mutation p.S738G 0.22 tolerated(0.11) benign(0.246) TCGA-F5-6814-01 19 50979571 50979571 G T FAM71E1 Silent p.L25L 0.30 TCGA-F5-6814-01 19 51021653 51021653 C T LRRC4B Silent p.T439T 0.50 TCGA-F5-6814-01 19 51022361 51022361 G A LRRC4B Silent p.F203F 0.42 TCGA-F5-6814-01 19 51128712 51128712 G A SYT3 Silent p.F504F 0.29 TCGA-F5-6814-01 19 51165438 51165438 A G SHANK1 Silent p.F2090F 0.21 TCGA-F5-6814-01 19 51226658 51226658 G T CLEC11A 5'UTR 0.40 TCGA-F5-6814-01 19 51465118 51465118 A G KLK6 Missense_Mutation p.I155T 0.42 deleterious(0) possibly_damaging(0.726) TCGA-F5-6814-01 19 51483091 51483091 A C KLK7 Missense_Mutation p.S187A 0.38 tolerated(0.2) benign(0.056) TCGA-F5-6814-01 19 51528918 51528918 T C KLK11 Silent p.E22E 0.23 TCGA-F5-6814-01 19 51537297 51537297 G A KLK12 Missense_Mutation p.R46C 0.41 tolerated(0.17) possibly_damaging(0.906) TCGA-F5-6814-01 19 51656398 51656398 G T SIGLEC7 Nonsense_Mutation p.E434* 0.38 TCGA-F5-6814-01 19 51768846 51768846 C A SIGLECL1 Missense_Mutation p.L83I 0.22 tolerated(0.37) possibly_damaging(0.462) TCGA-F5-6814-01 19 51844535 51844535 C T VSIG10L Missense_Mutation p.R256Q 0.33 tolerated(0.09) benign(0.026) TCGA-F5-6814-01 19 51920096 51920096 G T SIGLEC10 Missense_Mutation p.S177Y 0.38 deleterious(0.02) possibly_damaging(0.82) TCGA-F5-6814-01 19 51920385 51920385 G A SIGLEC10 Silent p.S124S 0.27 TCGA-F5-6814-01 19 51920716 51920716 G A SIGLEC10 Missense_Mutation p.S14F 0.48 deleterious(0.02) possibly_damaging(0.485) TCGA-F5-6814-01 19 51958914 51958914 G T SIGLEC8 Missense_Mutation p.S270Y 0.31 deleterious(0) possibly_damaging(0.903) TCGA-F5-6814-01 19 51984717 51984717 T G CEACAM18 Silent p.A218A 0.38 TCGA-F5-6814-01 19 52034477 52034477 G A SIGLEC6 Missense_Mutation p.R122W 0.18 deleterious(0.04) possibly_damaging(0.492) TCGA-F5-6814-01 19 52034869 52034869 T C SIGLEC6 Missense_Mutation p.M12V 0.26 deleterious_low_confidence(0) benign(0.008) TCGA-F5-6814-01 19 52076633 52076633 G T ZNF175 Missense_Mutation p.E17D 0.44 deleterious(0.05) benign(0.038) TCGA-F5-6814-01 19 52090816 52090816 A C ZNF175 Missense_Mutation p.K411T 0.21 deleterious(0.01) probably_damaging(0.918) TCGA-F5-6814-01 19 52091320 52091320 G A ZNF175 Missense_Mutation p.R579Q 0.41 tolerated(0.07) probably_damaging(0.997) TCGA-F5-6814-01 19 52273150 52273150 G A FPR2 3'UTR 0.34 TCGA-F5-6814-01 19 52329010 52329010 A T FPR3 3'UTR 0.21 TCGA-F5-6814-01 19 52376371 52376371 A C ZNF577 Missense_Mutation p.L291R 0.32 deleterious(0.02) probably_damaging(0.924) TCGA-F5-6814-01 19 52448835 52448835 G T ZNF613 Missense_Mutation p.D567Y 0.36 deleterious(0.01) benign(0.252) TCGA-F5-6814-01 19 52469194 52469194 C T ZNF350 Missense_Mutation p.R171Q 0.34 tolerated(1) benign(0.001) TCGA-F5-6814-01 19 52496181 52496181 A C ZNF615 Silent p.A727A 0.14 TCGA-F5-6814-01 19 52496398 52496398 C A ZNF615 Missense_Mutation p.R655L 0.40 deleterious(0.05) probably_damaging(0.996) TCGA-F5-6814-01 19 52536998 52536998 C T ZNF432 Missense_Mutation p.R645Q 0.14 tolerated(0.09) benign(0.004) TCGA-F5-6814-01 19 52537108 52537108 C A ZNF432 Missense_Mutation p.M608I 0.22 tolerated(0.28) benign(0.001) TCGA-F5-6814-01 19 52537922 52537922 C T ZNF432 Missense_Mutation p.R337Q 0.20 tolerated(0.05) possibly_damaging(0.528) TCGA-F5-6814-01 19 52568364 52568364 T G ZNF841 Missense_Mutation p.K924T 0.07 deleterious_low_confidence(0) benign(0.334) TCGA-F5-6814-01 19 52570630 52570630 G A ZNF841 Nonsense_Mutation p.R169* 0.42 TCGA-F5-6814-01 19 52618159 52618159 G T ZNF616 Missense_Mutation p.S753Y 0.18 tolerated(0.1) benign(0.322) TCGA-F5-6814-01 19 52618527 52618527 C A ZNF616 Missense_Mutation p.E630D 0.35 deleterious(0.03) benign(0.115) TCGA-F5-6814-01 19 52658126 52658126 T C ZNF836 Silent p.%3D 0.23 TCGA-F5-6814-01 19 52658750 52658750 C A ZNF836 Missense_Mutation p.R729I 0.15 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 19 52659451 52659451 C A ZNF836 Missense_Mutation p.E495D 0.43 deleterious(0.02) probably_damaging(0.938) TCGA-F5-6814-01 19 52716081 52716081 G A PPP2R1A Missense_Mutation p.E216K 0.14 deleterious(0.03) benign(0.036) TCGA-F5-6814-01 19 52723453 52723453 C A PPP2R1A Missense_Mutation p.F438L 0.43 deleterious(0.04) benign(0.026) TCGA-F5-6814-01 19 52793889 52793889 G A ZNF766 Missense_Mutation p.R282Q 0.26 tolerated(1) benign(0.023) TCGA-F5-6814-01 19 52825458 52825458 G T ZNF480 Nonsense_Mutation p.E319* 0.45 TCGA-F5-6814-01 19 52825764 52825764 C A ZNF480 Missense_Mutation p.H421N 0.41 deleterious(0) possibly_damaging(0.788) TCGA-F5-6814-01 19 52887612 52887612 G T ZNF880 Missense_Mutation p.R260I 0.44 deleterious(0.05) benign(0.438) TCGA-F5-6814-01 19 52919827 52919827 G T ZNF528 Missense_Mutation p.K574N 0.37 deleterious(0) benign(0.245) TCGA-F5-6814-01 19 52934701 52934701 C T ZNF534 5'UTR 0.38 TCGA-F5-6814-01 19 52941379 52941379 C A ZNF534 Silent p.I235I 0.41 TCGA-F5-6814-01 19 52941715 52941715 C A ZNF534 Silent p.V347V 0.42 TCGA-F5-6814-01 19 52941806 52941806 C T ZNF534 Nonsense_Mutation p.R378* 0.36 TCGA-F5-6814-01 19 52955082 52955082 C T ZNF578 5'Flank 0.15 TCGA-F5-6814-01 19 52955190 52955190 G T ZNF578 5'Flank 0.19 TCGA-F5-6814-01 19 53015074 53015074 G T ZNF578 Missense_Mutation p.E480D 0.19 deleterious(0.03) benign(0.089) TCGA-F5-6814-01 19 53015320 53015320 C T ZNF578 Silent p.S562S 0.35 TCGA-F5-6814-01 19 53057926 53057926 G A ZNF808 Missense_Mutation p.R586H 0.38 tolerated(0.24) benign(0) TCGA-F5-6814-01 19 53058407 53058407 G A ZNF808 Silent p.Q746Q 0.23 TCGA-F5-6814-01 19 53208190 53208190 C A ZNF611 Nonstop_Mutation p.*706Yext*84 0.41 TCGA-F5-6814-01 19 53303454 53303454 C A ZNF28 Missense_Mutation p.E548D 0.17 deleterious(0.02) benign(0.294) TCGA-F5-6814-01 19 53384821 53384821 C A ZNF320 Missense_Mutation p.E186D 0.43 tolerated(0.06) benign(0.142) TCGA-F5-6814-01 19 53472913 53472913 C A ZNF702P RNA 0.26 TCGA-F5-6814-01 19 53473222 53473222 C A ZNF702P RNA 0.36 TCGA-F5-6814-01 19 53473702 53473702 C A ZNF702P RNA 0.21 TCGA-F5-6814-01 19 53571529 53571529 C A ZNF160 Missense_Mutation p.R753I 0.29 tolerated(0.05) probably_damaging(0.987) TCGA-F5-6814-01 19 53611735 53611735 C A ZNF415 Missense_Mutation p.K521N 0.10 deleterious(0) benign(0.039) TCGA-F5-6814-01 19 53612007 53612007 G A ZNF415 Missense_Mutation p.R431W 0.19 tolerated(0.14) benign(0.082) TCGA-F5-6814-01 19 53619094 53619094 A C ZNF415 Intron 0.32 TCGA-F5-6814-01 19 53645491 53645491 A C ZNF347 Missense_Mutation p.L198R 0.26 tolerated(0.31) benign(0.003) TCGA-F5-6814-01 19 53645545 53645545 A C ZNF347 Missense_Mutation p.L180R 0.38 tolerated(0.32) benign(0.155) TCGA-F5-6814-01 19 53668944 53668944 A C ZNF665 Missense_Mutation p.C267G 0.37 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 19 53740880 53740880 C A ZNF677 Missense_Mutation p.R367I 0.35 tolerated(0.06) possibly_damaging(0.786) TCGA-F5-6814-01 19 53741153 53741153 G A ZNF677 Missense_Mutation p.S276L 0.37 tolerated(0.06) benign(0.008) TCGA-F5-6814-01 19 53741229 53741229 T C ZNF677 Missense_Mutation p.T251A 0.09 tolerated(0.3) benign(0.001) TCGA-F5-6814-01 19 53741251 53741251 A C ZNF677 Missense_Mutation p.I243M 0.42 tolerated(0.27) possibly_damaging(0.504) TCGA-F5-6814-01 19 53741369 53741369 C A ZNF677 Missense_Mutation p.R204I 0.34 tolerated(0.25) possibly_damaging(0.601) TCGA-F5-6814-01 19 53741549 53741549 G T ZNF677 Missense_Mutation p.S144Y 0.15 tolerated(0.41) benign(0.085) TCGA-F5-6814-01 19 53761852 53761852 C A VN1R2 Missense_Mutation p.S75Y 0.24 deleterious_low_confidence(0) benign(0.011) TCGA-F5-6814-01 19 53794147 53794147 C T BIRC8 5'UTR 0.39 TCGA-F5-6814-01 19 53854209 53854209 T C ZNF845 Missense_Mutation p.I94T 0.36 tolerated(0.37) probably_damaging(0.977) TCGA-F5-6814-01 19 53854464 53854464 G T ZNF845 Missense_Mutation p.R179I 0.33 tolerated(0.07) probably_damaging(0.988) TCGA-F5-6814-01 19 53854964 53854964 C T ZNF845 Missense_Mutation p.R346C 0.43 deleterious(0.01) probably_damaging(0.976) TCGA-F5-6814-01 19 53885040 53885040 G A ZNF525 Missense_Mutation p.R403K 0.29 tolerated(0.07) probably_damaging(0.921) TCGA-F5-6814-01 19 53886735 53886735 A C ZNF525 3'UTR 0.37 TCGA-F5-6814-01 19 53959046 53959046 C T ZNF761 RNA 0.26 TCGA-F5-6814-01 19 53993633 53993633 C A ZNF813 Silent p.I49I 0.24 TCGA-F5-6814-01 19 53994211 53994211 A G ZNF813 Missense_Mutation p.Q242R 0.27 tolerated(0.29) benign(0.248) TCGA-F5-6814-01 19 54072603 54072603 G A ZNF331 5'UTR 0.29 TCGA-F5-6814-01 19 54072623 54072623 C A ZNF331 5'UTR 0.44 TCGA-F5-6814-01 19 54080403 54080403 C T ZNF331 Nonsense_Mutation p.R197* 0.32 TCGA-F5-6814-01 19 54080686 54080686 G T ZNF331 Missense_Mutation p.R291I 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-F5-6814-01 19 54140183 54140183 G A DPRX Missense_Mutation p.A173T 0.09 tolerated(0.34) benign(0.019) TCGA-F5-6814-01 19 54234261 54234261 C A MIR518A1 RNA 0.30 TCGA-F5-6814-01 19 54240165 54240165 C A MIR516B1 RNA 0.36 TCGA-F5-6814-01 19 54261542 54261542 C A MIR1283-2 RNA 0.40 TCGA-F5-6814-01 19 54297342 54297342 C T NLRP12 Silent p.A1049A 0.12 TCGA-F5-6814-01 19 54297377 54297377 C A NLRP12 Missense_Mutation p.D1038Y 0.50 tolerated(0.32) possibly_damaging(0.73) TCGA-F5-6814-01 19 54314512 54314512 C T NLRP12 Missense_Mutation p.R134H 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 19 54394940 54394940 G A PRKCG Missense_Mutation p.R181H 0.30 deleterious(0.01) possibly_damaging(0.703) TCGA-F5-6814-01 19 54406329 54406329 C A PRKCG Silent p.I526I 0.21 TCGA-F5-6814-01 19 54632434 54632434 C T PRPF31 Silent p.I383I 0.33 TCGA-F5-6814-01 19 54659656 54659656 G A LENG1 Nonsense_Mutation p.R200* 0.31 TCGA-F5-6814-01 19 54721277 54721277 C T LILRB3 Missense_Mutation p.E555K 0.17 tolerated(0.67) benign(0.201) TCGA-F5-6814-01 19 54723066 54723066 A G LILRB3 Missense_Mutation p.V453A 0.10 tolerated(0.06) benign(0.038) TCGA-F5-6814-01 19 54744875 54744875 C A LILRA6 Missense_Mutation p.D263Y 0.14 deleterious(0.02) probably_damaging(0.966) TCGA-F5-6814-01 19 54759216 54759216 G A LILRB5 Silent p.C295C 0.29 TCGA-F5-6814-01 19 54868164 54868164 G A LAIR1 Silent p.V173V 0.19 TCGA-F5-6814-01 19 54947281 54947281 G A TTYH1 Missense_Mutation p.A427T 0.35 tolerated(0.45) benign(0.039) TCGA-F5-6814-01 19 55144638 55144638 A C LILRB1 Missense_Mutation p.K377T 0.17 tolerated(0.07) benign(0.003) TCGA-F5-6814-01 19 55147477 55147477 T C AC009892.10 Silent p.P32P 0.21 TCGA-F5-6814-01 19 55175425 55175425 G T LILRB4 Missense_Mutation p.R95I 0.40 deleterious(0.04) probably_damaging(0.987) TCGA-F5-6814-01 19 55451643 55451643 C T NLRP7 Missense_Mutation p.V182M 0.48 deleterious(0.01) possibly_damaging(0.727) TCGA-F5-6814-01 19 55452870 55452870 C T NLRP7 Silent p.A70A 0.26 TCGA-F5-6814-01 19 55493645 55493645 C T NLRP2 Silent p.I193I 0.48 TCGA-F5-6814-01 19 55690371 55690371 G A SYT5 Silent p.P13P 0.19 TCGA-F5-6814-01 19 55711726 55711726 C T PTPRH Missense_Mutation p.R433Q 0.08 benign(0.107) TCGA-F5-6814-01 19 55814719 55814719 C T BRSK1 Missense_Mutation p.R357W 0.35 deleterious(0) possibly_damaging(0.689) TCGA-F5-6814-01 19 55870296 55870296 T C FAM71E2 Missense_Mutation p.H647R 0.17 tolerated(0.19) benign(0.134) TCGA-F5-6814-01 19 56011312 56011312 T G SSC5D Missense_Mutation p.V612G 0.48 benign(0.052) TCGA-F5-6814-01 19 56188505 56188505 A C EPN1 5'UTR 0.16 TCGA-F5-6814-01 19 56244558 56244558 G A NLRP9 Silent p.I213I 0.42 TCGA-F5-6814-01 19 56300317 56300317 G A NLRP11 Missense_Mutation p.A904V 0.30 deleterious(0.01) possibly_damaging(0.895) TCGA-F5-6814-01 19 5641912 5641912 C T SAFB Silent p.V167V 0.21 TCGA-F5-6814-01 19 56424133 56424133 C A NLRP13 Missense_Mutation p.K350N 0.42 deleterious(0) probably_damaging(0.961) TCGA-F5-6814-01 19 56459327 56459327 A G NLRP8 Missense_Mutation p.H20R 0.36 tolerated_low_confidence(0.26) benign(0.227) TCGA-F5-6814-01 19 56539719 56539719 T G NLRP5 Missense_Mutation p.F707C 0.57 deleterious(0) probably_damaging(0.962) TCGA-F5-6814-01 19 56569706 56569706 T G NLRP5 Missense_Mutation p.F1134V 0.40 tolerated(0.09) possibly_damaging(0.754) TCGA-F5-6814-01 19 5679390 5679390 C A C19orf70 Missense_Mutation p.K75N 0.17 tolerated(0.07) possibly_damaging(0.485) TCGA-F5-6814-01 19 56895502 56895502 A T ZNF582 Nonsense_Mutation p.C428* 0.17 TCGA-F5-6814-01 19 56895710 56895710 C A ZNF582 Missense_Mutation p.R359I 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 19 56901462 56901462 A C ZNF582 Missense_Mutation p.L47R 0.19 deleterious(0.05) possibly_damaging(0.507) TCGA-F5-6814-01 19 56935000 56935000 G A ZNF583 Missense_Mutation p.E325K 0.38 tolerated(0.36) probably_damaging(0.998) TCGA-F5-6814-01 19 56935142 56935142 G T ZNF583 Missense_Mutation p.R372I 0.47 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 19 56935478 56935478 G T ZNF583 Missense_Mutation p.R484I 0.50 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 19 56953266 56953266 G T ZNF667 Missense_Mutation p.F366L 0.14 tolerated(0.32) benign(0) TCGA-F5-6814-01 19 56953347 56953347 A G ZNF667 Silent p.F339F 0.09 TCGA-F5-6814-01 19 5700807 5700807 C T LONP1 Missense_Mutation p.R500H 0.13 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 19 57035869 57035869 G T ZNF471 Nonsense_Mutation p.E145* 0.42 TCGA-F5-6814-01 19 57036467 57036467 G T ZNF471 Missense_Mutation p.R344I 0.27 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 19 57061900 57061900 A G ZFP28 Missense_Mutation p.D275G 0.40 tolerated(0.09) benign(0.142) TCGA-F5-6814-01 19 57065473 57065473 G T ZFP28 Missense_Mutation p.R440I 0.21 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 19 57089803 57089803 G T ZNF470 Missense_Mutation p.R669I 0.11 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 19 57089887 57089887 G A ZNF470 Missense_Mutation p.R697Q 0.42 tolerated(0.1) benign(0.001) TCGA-F5-6814-01 19 57286274 57286274 G A ZIM2 Missense_Mutation p.R456W 0.30 deleterious(0) probably_damaging(0.965) TCGA-F5-6814-01 19 57326515 57326515 T C PEG3 Missense_Mutation p.K1099E 0.36 tolerated(0.46) benign(0.005) TCGA-F5-6814-01 19 57326688 57326688 G T PEG3 Missense_Mutation p.A1041D 0.36 deleterious(0.04) possibly_damaging(0.822) TCGA-F5-6814-01 19 57327506 57327506 G T PEG3 Silent p.V768V 0.13 TCGA-F5-6814-01 19 57328599 57328599 A T PEG3 Missense_Mutation p.I404N 0.17 tolerated(0.28) benign(0.021) TCGA-F5-6814-01 19 57328641 57328641 C A PEG3 Missense_Mutation p.R390I 0.19 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 19 57335822 57335822 G A PEG3 Nonsense_Mutation p.R68* 0.33 TCGA-F5-6814-01 19 57641066 57641066 C A USP29 Missense_Mutation p.F341L 0.28 tolerated(0.13) benign(0.002) TCGA-F5-6814-01 19 57641465 57641465 T C USP29 Silent p.D474D 0.10 TCGA-F5-6814-01 19 57641593 57641593 A G USP29 Missense_Mutation p.N517S 0.38 tolerated(0.14) benign(0.079) TCGA-F5-6814-01 19 57642852 57642852 C T USP29 3'UTR 0.15 TCGA-F5-6814-01 19 57646640 57646640 T G ZIM3 Missense_Mutation p.K355N 0.37 deleterious(0.02) possibly_damaging(0.66) TCGA-F5-6814-01 19 57646889 57646889 A C ZIM3 Missense_Mutation p.I272M 0.09 deleterious(0.01) possibly_damaging(0.825) TCGA-F5-6814-01 19 57743407 57743407 C T AURKC Silent p.R37R 0.44 TCGA-F5-6814-01 19 57743562 57743562 G A AURKC Missense_Mutation p.R89H 0.43 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 19 57746786 57746786 G A AURKC 3'UTR 0.26 TCGA-F5-6814-01 19 57766021 57766021 G A ZNF805 Missense_Mutation p.A612T 0.38 tolerated(0.26) benign(0.003) TCGA-F5-6814-01 19 57766156 57766156 G A ZNF805 3'Flank 0.20 TCGA-F5-6814-01 19 57773627 57773627 A G CTC-444N24.8 RNA 0.21 TCGA-F5-6814-01 19 57803135 57803135 G A ZNF460 Missense_Mutation p.R409Q 0.34 tolerated(0.33) possibly_damaging(0.784) TCGA-F5-6814-01 19 57839426 57839426 A C ZNF543 Missense_Mutation p.Y199S 0.09 deleterious(0) benign(0.273) TCGA-F5-6814-01 19 57867705 57867705 G A ZNF304 Silent p.K156K 0.45 TCGA-F5-6814-01 19 57876295 57876295 G T TRAPPC2P1 Missense_Mutation p.D32Y 0.14 deleterious(0) possibly_damaging(0.802) TCGA-F5-6814-01 19 57876489 57876489 G T TRAPPC2P1 Missense_Mutation p.K96N 0.19 deleterious(0) possibly_damaging(0.556) TCGA-F5-6814-01 19 57876565 57876565 C T TRAPPC2P1 Nonsense_Mutation p.R122* 0.33 TCGA-F5-6814-01 19 57910741 57910741 A C ZNF548 Missense_Mutation p.E374D 0.21 deleterious(0.03) probably_damaging(0.971) TCGA-F5-6814-01 19 57946952 57946952 C A ZNF749 Missense_Mutation p.N2K 0.12 tolerated(0.11) possibly_damaging(0.727) TCGA-F5-6814-01 19 57946953 57946953 C A ZNF749 Missense_Mutation p.L3M 0.12 tolerated(0.23) possibly_damaging(0.86) TCGA-F5-6814-01 19 57956292 57956292 C A ZNF749 Missense_Mutation p.F592L 0.37 tolerated(0.25) possibly_damaging(0.787) TCGA-F5-6814-01 19 57966776 57966776 C A VN1R1 3'UTR 0.24 TCGA-F5-6814-01 19 57966897 57966897 G A VN1R1 Missense_Mutation p.R320C 0.50 deleterious(0) benign(0) TCGA-F5-6814-01 19 58005061 58005061 T G ZNF419 Missense_Mutation p.F380C 0.29 tolerated(0.18) probably_damaging(0.971) TCGA-F5-6814-01 19 58048645 58048645 C T ZNF549 Silent p.A91A 0.37 TCGA-F5-6814-01 19 58049259 58049259 G T ZNF549 Missense_Mutation p.R296I 0.38 deleterious(0) possibly_damaging(0.666) TCGA-F5-6814-01 19 58049667 58049667 T G ZNF549 Missense_Mutation p.L432R 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 19 58049669 58049669 C A ZNF549 Missense_Mutation p.L433I 0.44 tolerated(1) benign(0.103) TCGA-F5-6814-01 19 58058262 58058262 C A ZNF550 3'UTR 0.26 TCGA-F5-6814-01 19 58102035 58102035 C T ZIK1 Missense_Mutation p.R286W 0.24 tolerated(0.15) probably_damaging(0.957) TCGA-F5-6814-01 19 58187558 58187558 G T ZSCAN4 Missense_Mutation p.E15D 0.17 tolerated(0.12) benign(0.026) TCGA-F5-6814-01 19 58187890 58187890 G A ZSCAN4 Missense_Mutation p.S126N 0.45 tolerated(0.26) benign(0.105) TCGA-F5-6814-01 19 58197916 58197916 T G ZNF551 Silent p.T91T 0.36 TCGA-F5-6814-01 19 58216246 58216246 C A ZNF154 Missense_Mutation p.E45D 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-F5-6814-01 19 58290187 58290187 G T ZNF586 Missense_Mutation p.D78Y 0.26 tolerated(0.64) benign(0.009) TCGA-F5-6814-01 19 58371253 58371253 G A ZNF587 Silent p.P491P 0.32 TCGA-F5-6814-01 19 58371587 58371587 T G ZNF587 3'UTR 0.32 TCGA-F5-6814-01 19 58384467 58384467 C T ZNF814 Missense_Mutation p.R764Q 0.42 deleterious(0.02) probably_damaging(0.945) TCGA-F5-6814-01 19 58384472 58384472 A G ZNF814 Silent p.H762H 0.37 TCGA-F5-6814-01 19 58384632 58384632 A G ZNF814 Missense_Mutation p.I709T 0.33 tolerated(0.11) possibly_damaging(0.559) TCGA-F5-6814-01 19 58385594 58385594 C T ZNF814 Silent p.S388S 0.29 TCGA-F5-6814-01 19 58438698 58438698 C A ZNF418 Missense_Mutation p.R284I 0.27 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 19 58438812 58438812 C A ZNF418 Missense_Mutation p.S246I 0.29 tolerated(0.55) probably_damaging(0.932) TCGA-F5-6814-01 19 58453953 58453953 A G ZNF256 Missense_Mutation p.S75P 0.18 tolerated(0.07) probably_damaging(0.994) TCGA-F5-6814-01 19 58640203 58640203 C T ZNF329 Missense_Mutation p.R223Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 19 58773582 58773582 C T ZNF544 Missense_Mutation p.T537M 0.14 tolerated(0.11) possibly_damaging(0.657) TCGA-F5-6814-01 19 58944929 58944929 C T ZNF132 Missense_Mutation p.E628K 0.50 tolerated(0.21) probably_damaging(0.93) TCGA-F5-6814-01 19 58945278 58945278 C T ZNF132 Silent p.G511G 0.18 TCGA-F5-6814-01 19 58988888 58988888 C T ZNF446 Silent p.V101V 0.48 TCGA-F5-6814-01 19 5918560 5918560 G A RANBP3 Missense_Mutation p.R474C 0.12 tolerated(0.2) probably_damaging(0.999) TCGA-F5-6814-01 19 6147577 6147577 G A ACSBG2 Missense_Mutation p.R63Q 0.34 tolerated(0.08) probably_damaging(0.97) TCGA-F5-6814-01 19 617305 617305 T C POLRMT Missense_Mutation p.Q1221R 0.39 tolerated(0.41) benign(0.012) TCGA-F5-6814-01 19 6381407 6381407 C A GTF2F1 Missense_Mutation p.K327N 0.35 tolerated(0.06) possibly_damaging(0.587) TCGA-F5-6814-01 19 6426310 6426310 A C SLC25A41 3'UTR 0.36 TCGA-F5-6814-01 19 6427258 6427258 G T SLC25A41 Missense_Mutation p.L266I 0.30 deleterious(0.04) possibly_damaging(0.832) TCGA-F5-6814-01 19 6670004 6670004 C T TNFSF14 Missense_Mutation p.R26Q 0.27 tolerated(0.19) benign(0.004) TCGA-F5-6814-01 19 6702553 6702553 G A C3 Silent p.I761I 0.36 TCGA-F5-6814-01 19 6821839 6821839 G T VAV1 Missense_Mutation p.D140Y 0.13 deleterious(0) possibly_damaging(0.841) TCGA-F5-6814-01 19 6919676 6919676 C A EMR1 Missense_Mutation p.S513Y 0.32 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 19 7166227 7166227 G A INSR Missense_Mutation p.S600L 0.13 tolerated(0.28) benign(0.396) TCGA-F5-6814-01 19 7605050 7605050 C T PNPLA6 Silent p.F199F 0.41 TCGA-F5-6814-01 19 7676907 7676907 T C CAMSAP3 Missense_Mutation p.S537P 0.24 tolerated(0.35) benign(0.002) TCGA-F5-6814-01 19 7682715 7682715 G A CAMSAP3 Silent p.T1201T 0.13 TCGA-F5-6814-01 19 7916418 7916418 C A EVI5L Missense_Mutation p.F284L 0.41 tolerated(0.9) benign(0.034) TCGA-F5-6814-01 19 7987347 7987347 G A SNAPC2 Missense_Mutation p.D235N 0.37 tolerated(0.1) possibly_damaging(0.621) TCGA-F5-6814-01 19 8389900 8389900 C A KANK3 Nonsense_Mutation p.E673* 0.26 TCGA-F5-6814-01 19 8399281 8399281 C A KANK3 Missense_Mutation p.K450N 0.33 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 19 8528568 8528568 G T HNRNPM Nonsense_Mutation p.E146* 0.22 TCGA-F5-6814-01 19 8550604 8550604 G A HNRNPM Missense_Mutation p.G431D 0.19 tolerated(0.07) probably_damaging(0.981) TCGA-F5-6814-01 19 8595385 8595385 G A MYO1F Missense_Mutation p.R706C 0.57 deleterious(0) benign(0.304) TCGA-F5-6814-01 19 8612995 8612995 G A MYO1F Silent p.F398F 0.17 TCGA-F5-6814-01 19 8661038 8661038 A C ADAMTS10 Missense_Mutation p.L419R 0.21 deleterious(0) probably_damaging(0.977) TCGA-F5-6814-01 19 8973586 8973586 G T MUC16 Missense_Mutation p.H14244N 0.09 possibly_damaging(0.789) TCGA-F5-6814-01 19 8976289 8976289 A G MUC16 Missense_Mutation p.V14180A 0.24 benign(0.31) TCGA-F5-6814-01 19 9013886 9013886 A C MUC16 Missense_Mutation p.L12835R 0.55 possibly_damaging(0.691) TCGA-F5-6814-01 19 9024478 9024478 G A MUC16 Missense_Mutation p.S12352F 0.34 probably_damaging(0.965) TCGA-F5-6814-01 19 9024885 9024885 G A MUC16 Missense_Mutation p.T12326I 0.19 benign(0.275) TCGA-F5-6814-01 19 9026193 9026193 G T MUC16 Missense_Mutation p.L12265M 0.44 probably_damaging(0.948) TCGA-F5-6814-01 19 9027261 9027261 C T MUC16 Missense_Mutation p.D12209N 0.26 possibly_damaging(0.679) TCGA-F5-6814-01 19 9057826 9057826 A T MUC16 Missense_Mutation p.S9874T 0.39 unknown(0) TCGA-F5-6814-01 19 9058306 9058306 A C MUC16 Missense_Mutation p.S9714A 0.40 unknown(0) TCGA-F5-6814-01 19 9059238 9059238 A C MUC16 Missense_Mutation p.F9403C 0.31 unknown(0) TCGA-F5-6814-01 19 9059241 9059241 C A MUC16 Missense_Mutation p.R9402I 0.20 unknown(0) TCGA-F5-6814-01 19 9059328 9059328 G T MUC16 Missense_Mutation p.P9373H 0.08 unknown(0) TCGA-F5-6814-01 19 9060220 9060220 C A MUC16 Nonsense_Mutation p.E9076* 0.15 TCGA-F5-6814-01 19 9060323 9060323 G T MUC16 Silent p.S9041S 0.43 TCGA-F5-6814-01 19 9061131 9061131 C A MUC16 Missense_Mutation p.R8772I 0.07 unknown(0) TCGA-F5-6814-01 19 9061894 9061894 T G MUC16 Missense_Mutation p.T8518P 0.22 unknown(0) TCGA-F5-6814-01 19 9062905 9062905 C T MUC16 Missense_Mutation p.E8181K 0.09 unknown(0) TCGA-F5-6814-01 19 9064158 9064158 G T MUC16 Missense_Mutation p.T7763K 0.35 unknown(0) TCGA-F5-6814-01 19 9064252 9064252 A C MUC16 Missense_Mutation p.L7732V 0.09 unknown(0) TCGA-F5-6814-01 19 9064759 9064759 G T MUC16 Missense_Mutation p.L7563I 0.40 unknown(0) TCGA-F5-6814-01 19 9069437 9069437 C A MUC16 Missense_Mutation p.E6003D 0.22 unknown(0) TCGA-F5-6814-01 19 9071455 9071455 C A MUC16 Nonsense_Mutation p.E5331* 0.31 TCGA-F5-6814-01 19 9072279 9072279 G T MUC16 Missense_Mutation p.S5056Y 0.27 unknown(0) TCGA-F5-6814-01 19 9072788 9072788 C A MUC16 Missense_Mutation p.E4886D 0.38 unknown(0) TCGA-F5-6814-01 19 9073060 9073060 T C MUC16 Missense_Mutation p.T4796A 0.34 unknown(0) TCGA-F5-6814-01 19 9073371 9073371 A G MUC16 Missense_Mutation p.I4692T 0.35 unknown(0) TCGA-F5-6814-01 19 9076112 9076112 G T MUC16 Missense_Mutation p.F3778L 0.32 unknown(0) TCGA-F5-6814-01 19 9077292 9077292 T G MUC16 Missense_Mutation p.K3385T 0.14 unknown(0) TCGA-F5-6814-01 19 9077611 9077611 C A MUC16 Missense_Mutation p.A3279S 0.39 unknown(0) TCGA-F5-6814-01 19 9077742 9077742 G A MUC16 Missense_Mutation p.T3235I 0.36 unknown(0) TCGA-F5-6814-01 19 9077791 9077791 C A MUC16 Nonsense_Mutation p.E3219* 0.36 TCGA-F5-6814-01 19 9080524 9080524 C A MUC16 Missense_Mutation p.K3169N 0.20 unknown(0) TCGA-F5-6814-01 19 9082691 9082691 A C MUC16 Missense_Mutation p.F3042V 0.26 unknown(0) TCGA-F5-6814-01 19 9083419 9083419 C T MUC16 Missense_Mutation p.G2799E 0.14 unknown(0) TCGA-F5-6814-01 19 9084872 9084872 C A MUC16 Nonsense_Mutation p.E2315* 0.35 TCGA-F5-6814-01 19 9085972 9085972 G T MUC16 Missense_Mutation p.S1948Y 0.40 unknown(0) TCGA-F5-6814-01 19 9086534 9086534 C T MUC16 Missense_Mutation p.E1761K 0.32 unknown(0) TCGA-F5-6814-01 19 9089222 9089222 C A MUC16 Nonsense_Mutation p.E865* 0.39 TCGA-F5-6814-01 19 9091116 9091116 A G MUC16 Silent p.L233L 0.13 TCGA-F5-6814-01 19 9091437 9091437 C A MUC16 Missense_Mutation p.L126F 0.19 unknown(0) TCGA-F5-6814-01 19 9213844 9213844 C T OR7G2 Missense_Mutation p.V47I 0.46 tolerated(0.17) benign(0.006) TCGA-F5-6814-01 19 9225525 9225525 A G OR7G1 Silent p.I305I 0.50 TCGA-F5-6814-01 19 9225766 9225766 A G OR7G1 Missense_Mutation p.V225A 0.36 deleterious(0) possibly_damaging(0.814) TCGA-F5-6814-01 19 9237340 9237340 C T OR7G3 Missense_Mutation p.G96D 0.11 deleterious(0.05) possibly_damaging(0.638) TCGA-F5-6814-01 19 9267379 9267379 C T ZNF317 Silent p.F39F 0.25 TCGA-F5-6814-01 19 9296483 9296483 T A OR7D2 Missense_Mutation p.F9Y 0.15 deleterious_low_confidence(0.02) benign(0.006) TCGA-F5-6814-01 19 9297203 9297203 C A OR7D2 Missense_Mutation p.S249Y 0.40 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-F5-6814-01 19 9297222 9297222 C T OR7D2 Silent p.G255G 0.33 TCGA-F5-6814-01 19 9297321 9297321 C A OR7D2 Missense_Mutation p.F288L 0.39 deleterious_low_confidence(0) benign(0.216) TCGA-F5-6814-01 19 9298531 9298531 G T OR7D2 3'UTR 0.32 TCGA-F5-6814-01 19 9298774 9298774 T C OR7D2 3'UTR 0.41 TCGA-F5-6814-01 19 9298784 9298784 T G OR7D2 3'UTR 0.31 TCGA-F5-6814-01 19 9299293 9299293 A G OR7D2 3'UTR 0.09 TCGA-F5-6814-01 19 9362304 9362304 C A OR7E24 Missense_Mutation p.F195L 0.41 deleterious(0.01) possibly_damaging(0.651) TCGA-F5-6814-01 19 9492254 9492254 G T ZNF177 Missense_Mutation p.R416I 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 19 9524775 9524775 C T ZNF266 Missense_Mutation p.A276T 0.10 tolerated(0.11) possibly_damaging(0.836) TCGA-F5-6814-01 19 9577485 9577485 T C ZNF560 Missense_Mutation p.K713R 0.35 tolerated(0.12) benign(0.018) TCGA-F5-6814-01 19 9579006 9579006 C A ZNF560 Missense_Mutation p.R206I 0.33 tolerated(0.09) possibly_damaging(0.766) TCGA-F5-6814-01 19 9644624 9644624 C T ZNF426 Missense_Mutation p.D46N 0.36 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 19 9676586 9676586 T C ZNF121 3'UTR 0.28 TCGA-F5-6814-01 19 9677130 9677130 C T ZNF121 Missense_Mutation p.R220Q 0.32 tolerated(0.29) benign(0.297) TCGA-F5-6814-01 19 9763546 9763546 A G ZNF562 3'UTR 0.24 TCGA-F5-6814-01 19 9764386 9764386 C A ZNF562 Nonsense_Mutation p.E174* 0.40 TCGA-F5-6814-01 19 9869139 9869139 C A ZNF846 Missense_Mutation p.R205I 0.46 deleterious(0.01) possibly_damaging(0.898) TCGA-F5-6814-01 1 100174420 100174420 T C FRRS1 3'UTR 0.31 TCGA-F5-6814-01 1 100329952 100329952 G T AGL Missense_Mutation p.M157I 0.26 deleterious(0.02) possibly_damaging(0.688) TCGA-F5-6814-01 1 100336085 100336085 A C AGL Missense_Mutation p.K265T 0.07 tolerated(0.09) benign(0.13) TCGA-F5-6814-01 1 10035735 10035735 C A NMNAT1 Silent p.V67V 0.26 TCGA-F5-6814-01 1 10041203 10041203 G T NMNAT1 Missense_Mutation p.K138N 0.08 tolerated(0.3) benign(0.023) TCGA-F5-6814-01 1 100480881 100480881 T C SLC35A3 Silent p.L220L 0.42 TCGA-F5-6814-01 1 100483315 100483315 G A SLC35A3 Silent p.S277S 0.22 TCGA-F5-6814-01 1 100602457 100602457 G T TRMT13 Missense_Mutation p.R56I 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 100661786 100661786 A C DBT 3'UTR 0.22 TCGA-F5-6814-01 1 100889817 100889817 G A CDC14A Missense_Mutation p.A117T 0.18 tolerated(0.43) benign(0.005) TCGA-F5-6814-01 1 100921044 100921044 G A CDC14A Silent p.E201E 0.38 TCGA-F5-6814-01 1 100928260 100928260 G A CDC14A Missense_Mutation p.V221M 0.42 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 1 101006321 101006321 G T GPR88 3'UTR 0.34 TCGA-F5-6814-01 1 101190190 101190190 G T VCAM1 Missense_Mutation p.K224N 0.45 deleterious(0) possibly_damaging(0.694) TCGA-F5-6814-01 1 101458213 101458213 C A DPH5 Missense_Mutation p.R205I 0.15 tolerated(0.1) benign(0.009) TCGA-F5-6814-01 1 10165584 10165584 T G UBE4B Missense_Mutation p.D197E 0.34 deleterious(0.01) benign(0.417) TCGA-F5-6814-01 1 101706179 101706179 C A S1PR1 3'UTR 0.22 TCGA-F5-6814-01 1 101706983 101706983 G T S1PR1 3'UTR 0.36 TCGA-F5-6814-01 1 101707068 101707068 T G S1PR1 3'UTR 0.25 TCGA-F5-6814-01 1 103343717 103343717 C A COL11A1 Missense_Mutation p.R1760I 0.48 unknown(0) TCGA-F5-6814-01 1 103345445 103345445 A G COL11A1 Missense_Mutation p.S1690P 0.08 unknown(0) TCGA-F5-6814-01 1 103385872 103385872 C A COL11A1 Nonsense_Mutation p.E1253* 0.37 TCGA-F5-6814-01 1 103385917 103385917 G T COL11A1 Missense_Mutation p.P1238T 0.11 unknown(0) TCGA-F5-6814-01 1 103491503 103491503 C A COL11A1 Intron 0.34 TCGA-F5-6814-01 1 10356961 10356961 G A KIF1B Missense_Mutation p.R577H 0.13 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 1 10364420 10364420 G A KIF1B Intron 0.34 TCGA-F5-6814-01 1 104114172 104114172 C A AMY2B Intron 0.21 TCGA-F5-6814-01 1 104160591 104160591 G T AMY2A Nonsense_Mutation p.E62* 0.35 TCGA-F5-6814-01 1 104162248 104162248 G A AMY2A Missense_Mutation p.E196K 0.20 tolerated(0.08) benign(0.026) TCGA-F5-6814-01 1 104163236 104163236 G T AMY2A Nonsense_Mutation p.E270* 0.13 TCGA-F5-6814-01 1 10500410 10500410 G A APITD1 Silent p.A72A 0.40 TCGA-F5-6814-01 1 10510010 10510010 A C CORT 5'UTR 0.39 TCGA-F5-6814-01 1 107867351 107867351 T G NTNG1 Missense_Mutation p.F232V 0.48 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 1 107867509 107867509 C A NTNG1 Nonsense_Mutation p.Y284* 0.28 TCGA-F5-6814-01 1 107950308 107950308 C T NTNG1 Silent p.I355I 0.34 TCGA-F5-6814-01 1 108247681 108247681 G T VAV3 Missense_Mutation p.S502Y 0.15 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 108291593 108291593 G A VAV3 Missense_Mutation p.A500V 0.16 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 1 108918813 108918813 C T NBPF6 Intron 0.13 TCGA-F5-6814-01 1 109193759 109193759 C A HENMT1 Missense_Mutation p.M157I 0.23 tolerated(0.28) benign(0.017) TCGA-F5-6814-01 1 109202515 109202515 G A HENMT1 5'UTR 0.27 TCGA-F5-6814-01 1 109241271 109241271 G T PRPF38B Nonsense_Mutation p.E202* 0.39 TCGA-F5-6814-01 1 109270513 109270513 G A FNDC7 Missense_Mutation p.E399K 0.36 deleterious(0.01) probably_damaging(0.97) TCGA-F5-6814-01 1 109273298 109273298 C T FNDC7 Missense_Mutation p.P543S 0.11 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 1 109358749 109358749 C A AKNAD1 3'UTR 0.32 TCGA-F5-6814-01 1 109441582 109441582 C A GPSM2 Missense_Mutation p.L255I 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-F5-6814-01 1 109465091 109465091 G A GPSM2 Missense_Mutation p.R498Q 0.16 deleterious(0.02) probably_damaging(0.962) TCGA-F5-6814-01 1 109472231 109472231 A G CLCC1 3'UTR 0.39 TCGA-F5-6814-01 1 109479734 109479734 C T CLCC1 Missense_Mutation p.A450T 0.10 tolerated(0.6) benign(0.062) TCGA-F5-6814-01 1 109492455 109492455 G T CLCC1 Missense_Mutation p.S73Y 0.14 deleterious(0.03) benign(0.119) TCGA-F5-6814-01 1 109538349 109538349 G T WDR47 Missense_Mutation p.S523Y 0.27 deleterious(0.01) benign(0.044) TCGA-F5-6814-01 1 109731797 109731797 C T KIAA1324 Silent p.F443F 0.20 TCGA-F5-6814-01 1 109741247 109741247 G A KIAA1324 Missense_Mutation p.V818I 0.27 tolerated(0.06) benign(0.005) TCGA-F5-6814-01 1 109793871 109793871 G T CELSR2 Missense_Mutation p.E390D 0.13 tolerated(0.52) probably_damaging(0.945) TCGA-F5-6814-01 1 110020440 110020440 G A SYPL2 Missense_Mutation p.D153N 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 110050258 110050258 T G AMIGO1 Missense_Mutation p.D426A 0.24 tolerated(0.15) benign(0.003) TCGA-F5-6814-01 1 110051600 110051600 C A AMIGO1 5'UTR 0.19 TCGA-F5-6814-01 1 110128861 110128861 G T GNAI3 Missense_Mutation p.R205I 0.13 deleterious(0) probably_damaging(0.956) TCGA-F5-6814-01 1 110146043 110146043 T G GNAT2 Missense_Mutation p.K333T 0.42 deleterious(0.01) possibly_damaging(0.837) TCGA-F5-6814-01 1 110155462 110155462 C A GNAT2 Nonsense_Mutation p.E11* 0.55 TCGA-F5-6814-01 1 110171336 110171336 G A AMPD2 Silent p.S547S 0.33 TCGA-F5-6814-01 1 110257757 110257757 C A GSTM5 Silent p.T154T 0.12 TCGA-F5-6814-01 1 110257971 110257971 A G GSTM5 Intron 0.35 TCGA-F5-6814-01 1 110259935 110259935 C A GSTM5 Intron 0.13 TCGA-F5-6814-01 1 110553914 110553914 A T AHCYL1 Missense_Mutation p.N104I 0.16 deleterious(0) benign(0.397) TCGA-F5-6814-01 1 110561676 110561676 C T AHCYL1 Missense_Mutation p.R441C 0.37 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 1 110656508 110656508 C T UBL4B 3'UTR 0.49 TCGA-F5-6814-01 1 110709779 110709779 C A SLC6A17 Missense_Mutation p.F76L 0.22 deleterious(0) possibly_damaging(0.73) TCGA-F5-6814-01 1 110883348 110883348 C T RBM15 Missense_Mutation p.R441W 0.40 deleterious(0.03) benign(0.022) TCGA-F5-6814-01 1 110884188 110884188 A C RBM15 Missense_Mutation p.N721H 0.47 tolerated(0.18) benign(0.36) TCGA-F5-6814-01 1 110944130 110944130 G T LAMTOR5 3'UTR 0.11 TCGA-F5-6814-01 1 111060956 111060956 G A KCNA10 Missense_Mutation p.R152W 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 111061020 111061020 G T KCNA10 Missense_Mutation p.F130L 0.30 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 111061211 111061211 G A KCNA10 Missense_Mutation p.P67S 0.17 tolerated_low_confidence(0.43) benign(0) TCGA-F5-6814-01 1 111146732 111146732 C T KCNA2 Missense_Mutation p.V225I 0.19 tolerated(0.72) benign(0.003) TCGA-F5-6814-01 1 111147161 111147161 G T KCNA2 Missense_Mutation p.R82S 0.21 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 111436988 111436988 A G CD53 Missense_Mutation p.T98A 0.48 deleterious(0.03) benign(0.008) TCGA-F5-6814-01 1 111437007 111437007 T G CD53 Missense_Mutation p.F104C 0.33 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 1 111495160 111495160 C A LRIF1 Nonsense_Mutation p.E116* 0.33 TCGA-F5-6814-01 1 111495332 111495332 T G LRIF1 Silent p.L58L 0.12 TCGA-F5-6814-01 1 111730254 111730254 C A DENND2D Missense_Mutation p.K463N 0.11 tolerated(0.11) unknown(0) TCGA-F5-6814-01 1 111778647 111778647 G T CHI3L2 Missense_Mutation p.D203Y 0.32 tolerated(1) benign(0.004) TCGA-F5-6814-01 1 111781410 111781410 A G CHI3L2 Silent p.P258P 0.13 TCGA-F5-6814-01 1 111863055 111863055 C T CHIA Silent p.F466F 0.21 TCGA-F5-6814-01 1 1119361 1119361 A G TTLL10 Missense_Mutation p.I384V 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 1 111957338 111957338 C A OVGP1 Missense_Mutation p.E595D 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.475) TCGA-F5-6814-01 1 111963935 111963935 T G OVGP1 Missense_Mutation p.K289T 0.17 tolerated(0.17) benign(0.271) TCGA-F5-6814-01 1 111969090 111969090 G T OVGP1 Missense_Mutation p.L77I 0.40 deleterious(0.04) benign(0.146) TCGA-F5-6814-01 1 111983915 111983915 G A WDR77 Silent p.V322V 0.08 TCGA-F5-6814-01 1 111998829 111998829 A G ATP5F1 Silent p.K115K 0.36 TCGA-F5-6814-01 1 112003767 112003767 G A ATP5F1 3'UTR 0.27 TCGA-F5-6814-01 1 112246021 112246021 T G RAP1A Missense_Mutation p.S83A 0.19 deleterious(0.03) probably_damaging(0.993) TCGA-F5-6814-01 1 112298475 112298475 A C DDX20 5'UTR 0.23 TCGA-F5-6814-01 1 112309147 112309147 A C DDX20 Missense_Mutation p.N701H 0.29 tolerated(0.13) benign(0.006) TCGA-F5-6814-01 1 113666804 113666804 G A LRIG2 3'UTR 0.56 TCGA-F5-6814-01 1 114223908 114223908 A C MAGI3 Missense_Mutation p.N1093T 0.21 tolerated(0.37) probably_damaging(0.923) TCGA-F5-6814-01 1 114301444 114301444 C T PHTF1 Intron 0.43 TCGA-F5-6814-01 1 114380536 114380536 C A PTPN22 Nonsense_Mutation p.E496* 0.43 TCGA-F5-6814-01 1 114483810 114483810 G T HIPK1 Nonsense_Mutation p.E269* 0.44 TCGA-F5-6814-01 1 114523878 114523878 G A OLFML3 Silent p.E236E 0.35 TCGA-F5-6814-01 1 115147591 115147591 A C DENND2C Missense_Mutation p.F540C 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 115147642 115147642 C T DENND2C Missense_Mutation p.G523D 0.17 tolerated(0.08) possibly_damaging(0.772) TCGA-F5-6814-01 1 115161087 115161087 T G DENND2C Missense_Mutation p.D415A 0.21 deleterious(0.03) benign(0.001) TCGA-F5-6814-01 1 115220021 115220021 G A AMPD1 Missense_Mutation p.R480C 0.23 deleterious(0) probably_damaging(0.946) TCGA-F5-6814-01 1 115220031 115220031 G A AMPD1 Silent p.F476F 0.57 TCGA-F5-6814-01 1 115223060 115223060 C T AMPD1 Missense_Mutation p.R229Q 0.30 tolerated(0.49) benign(0.001) TCGA-F5-6814-01 1 115231345 115231345 G A AMPD1 Missense_Mutation p.R51C 0.17 deleterious(0) probably_damaging(0.953) TCGA-F5-6814-01 1 115251213 115251213 G T NRAS Silent p.L171L 0.19 TCGA-F5-6814-01 1 115428212 115428212 G T SYCP1 Nonsense_Mutation p.E323* 0.34 TCGA-F5-6814-01 1 115454194 115454194 A G SYCP1 Missense_Mutation p.E507G 0.24 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 1 115576076 115576076 C T TSHB Silent p.I31I 0.31 TCGA-F5-6814-01 1 115576838 115576838 T G TSHB Missense_Mutation p.F136C 0.38 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-F5-6814-01 1 115593133 115593133 C T TSPAN2 Missense_Mutation p.R215Q 0.12 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 11562845 11562845 G A PTCHD2 Missense_Mutation p.A403T 0.43 tolerated(0.12) probably_damaging(0.998) TCGA-F5-6814-01 1 115828685 115828685 G A NGF 3'UTR 0.31 TCGA-F5-6814-01 1 116382939 116382939 T G NHLH2 5'UTR 0.10 TCGA-F5-6814-01 1 116579946 116579946 T C SLC22A15 Missense_Mutation p.S370P 0.11 deleterious(0.02) benign(0.21) TCGA-F5-6814-01 1 1169907 1169907 C T B3GALT6 3'UTR 0.26 TCGA-F5-6814-01 1 117064599 117064599 G T CD58 Nonsense_Mutation p.S212* 0.12 TCGA-F5-6814-01 1 11718436 11718436 C T FBXO44 Silent p.F126F 0.44 TCGA-F5-6814-01 1 117307107 117307107 G T CD2 Missense_Mutation p.E205D 0.41 tolerated(0.39) benign(0.022) TCGA-F5-6814-01 1 117307209 117307209 A G CD2 Silent p.K239K 0.31 TCGA-F5-6814-01 1 117484421 117484421 T C PTGFRN Missense_Mutation p.V45A 0.12 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 117509815 117509815 G A PTGFRN Missense_Mutation p.R641Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 117564491 117564491 G A CD101 Missense_Mutation p.D772N 0.39 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 1 117605064 117605064 T G TTF2 Missense_Mutation p.L63V 0.37 deleterious(0.05) benign(0.181) TCGA-F5-6814-01 1 117617849 117617849 G T TTF2 Missense_Mutation p.D215Y 0.29 deleterious(0.02) benign(0.254) TCGA-F5-6814-01 1 117690248 117690248 G T VTCN1 3'UTR 0.27 TCGA-F5-6814-01 1 11779717 11779717 G A DRAXIN Silent p.T338T 0.09 TCGA-F5-6814-01 1 117944839 117944839 C T MAN1A2 Nonsense_Mutation p.R112* 0.17 TCGA-F5-6814-01 1 118167961 118167961 T C FAM46C 3'UTR 0.30 TCGA-F5-6814-01 1 118169816 118169816 T G FAM46C 3'UTR 0.40 TCGA-F5-6814-01 1 118170701 118170701 T G FAM46C 3'UTR 0.36 TCGA-F5-6814-01 1 11835498 11835498 C T C1orf167 Silent p.F689F 0.44 TCGA-F5-6814-01 1 118413154 118413154 G A GDAP2 3'UTR 0.16 TCGA-F5-6814-01 1 118514624 118514624 G T SPAG17 Missense_Mutation p.S2063Y 0.41 deleterious(0.01) possibly_damaging(0.785) TCGA-F5-6814-01 1 118537081 118537081 A C SPAG17 Missense_Mutation p.I1709S 0.36 deleterious(0) probably_damaging(0.945) TCGA-F5-6814-01 1 118550819 118550819 C T SPAG17 Missense_Mutation p.E1479K 0.27 tolerated(0.05) benign(0.039) TCGA-F5-6814-01 1 118566083 118566083 G T SPAG17 Missense_Mutation p.L1305I 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 118579428 118579428 G A SPAG17 Missense_Mutation p.S1133L 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 1 118581924 118581924 G A SPAG17 Missense_Mutation p.L1104F 0.11 tolerated(0.39) benign(0.01) TCGA-F5-6814-01 1 118581938 118581938 T G SPAG17 Missense_Mutation p.D1099A 0.34 tolerated(0.11) benign(0.031) TCGA-F5-6814-01 1 118584643 118584643 C T SPAG17 Missense_Mutation p.R946Q 0.33 tolerated(0.09) probably_damaging(0.998) TCGA-F5-6814-01 1 118634299 118634299 T G SPAG17 Missense_Mutation p.N430T 0.14 tolerated(0.05) possibly_damaging(0.819) TCGA-F5-6814-01 1 118640436 118640436 T G SPAG17 Missense_Mutation p.K290Q 0.26 deleterious(0.01) possibly_damaging(0.818) TCGA-F5-6814-01 1 118693895 118693895 C T SPAG17 Missense_Mutation p.R62H 0.22 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 11876678 11876678 C T CLCN6 Nonsense_Mutation p.R74* 0.22 TCGA-F5-6814-01 1 11907475 11907475 C A NPPA Nonsense_Mutation p.E49* 0.25 TCGA-F5-6814-01 1 11907497 11907497 C A NPPA Splice_Site p.X42_splice 0.36 TCGA-F5-6814-01 1 1190833 1190833 A G UBE2J2 Missense_Mutation p.L193P 0.30 tolerated(0.18) benign(0.209) TCGA-F5-6814-01 1 11917633 11917633 C A NPPB 3'UTR 0.28 TCGA-F5-6814-01 1 11918879 11918879 C A NPPB Missense_Mutation p.Q4H 0.48 deleterious(0.01) benign(0.142) TCGA-F5-6814-01 1 119474241 119474241 C T TBX15 Splice_Site p.X34_splice 0.33 TCGA-F5-6814-01 1 119576743 119576743 G T WARS2 Missense_Mutation p.F203L 0.30 tolerated(0.57) benign(0.014) TCGA-F5-6814-01 1 119927489 119927489 G A HAO2 Missense_Mutation p.R125Q 0.43 deleterious(0.02) possibly_damaging(0.812) TCGA-F5-6814-01 1 119927624 119927624 G A HAO2 Missense_Mutation p.R170Q 0.36 deleterious(0.02) benign(0.018) TCGA-F5-6814-01 1 120056488 120056488 A C HSD3B1 Missense_Mutation p.Q114H 0.51 tolerated(0.05) benign(0.03) TCGA-F5-6814-01 1 120056951 120056951 A G HSD3B1 Missense_Mutation p.N269D 0.32 deleterious(0) benign(0.072) TCGA-F5-6814-01 1 120437068 120437068 A G ADAM30 Missense_Mutation p.F631S 0.22 tolerated(0.07) benign(0.186) TCGA-F5-6814-01 1 120438133 120438133 A C ADAM30 Missense_Mutation p.F276C 0.12 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 120465301 120465301 C T NOTCH2 Missense_Mutation p.A1654T 0.12 deleterious(0.05) probably_damaging(0.996) TCGA-F5-6814-01 1 120906252 120906252 C A RP11-439A17.4 5'Flank 0.41 TCGA-F5-6814-01 1 120934398 120934398 T G FCGR1B Missense_Mutation p.Q97P 0.11 deleterious(0) probably_damaging(0.966) TCGA-F5-6814-01 1 12175683 12175683 C T TNFRSF8 Silent p.C281C 0.29 TCGA-F5-6814-01 1 12254011 12254011 G T TNFRSF1B Splice_Site p.X263_splice 0.32 TCGA-F5-6814-01 1 12337221 12337221 A C VPS13D Missense_Mutation p.K1192N 0.34 probably_damaging(0.965) TCGA-F5-6814-01 1 12337538 12337538 A C VPS13D Missense_Mutation p.K1298T 0.15 possibly_damaging(0.886) TCGA-F5-6814-01 1 12387814 12387814 G T VPS13D Missense_Mutation p.L2700F 0.42 benign(0.001) TCGA-F5-6814-01 1 12476735 12476735 G A VPS13D Missense_Mutation p.R4063Q 0.10 benign(0.132) TCGA-F5-6814-01 1 1266818 1266818 G T TAS1R3 Missense_Mutation p.M31I 0.23 tolerated(0.21) benign(0.03) TCGA-F5-6814-01 1 12711149 12711149 T C AADACL4 Missense_Mutation p.I59T 0.25 deleterious(0.04) benign(0.126) TCGA-F5-6814-01 1 12785798 12785798 A C AADACL3 Silent p.S296S 0.41 TCGA-F5-6814-01 1 12854143 12854143 T C PRAMEF1 Missense_Mutation p.S123P 0.22 tolerated(0.26) possibly_damaging(0.824) TCGA-F5-6814-01 1 12884845 12884845 G A PRAMEF11 Silent p.G422G 0.11 TCGA-F5-6814-01 1 12884872 12884872 G T PRAMEF11 Missense_Mutation p.F413L 0.20 tolerated(0.44) benign(0.034) TCGA-F5-6814-01 1 12919887 12919887 G A PRAMEF2 Silent p.E209E 0.26 TCGA-F5-6814-01 1 12979744 12979744 C A PRAMEF7 Silent p.L312L 0.17 TCGA-F5-6814-01 1 13475234 13475234 C T PRAMEF18 Missense_Mutation p.A299T 0.33 tolerated(0.26) benign(0.005) TCGA-F5-6814-01 1 14105699 14105699 C A PRDM2 Missense_Mutation p.S470Y 0.40 probably_damaging(0.971) TCGA-F5-6814-01 1 14108613 14108613 G A PRDM2 Silent p.K1441K 0.12 TCGA-F5-6814-01 1 144854563 144854563 C T PDE4DIP Missense_Mutation p.A2303T 0.09 tolerated(1) benign(0.026) TCGA-F5-6814-01 1 144886255 144886255 C T PDE4DIP Silent p.P993P 0.15 TCGA-F5-6814-01 1 144903190 144903190 C T PDE4DIP Missense_Mutation p.R901Q 0.57 tolerated(0.44) benign(0.032) TCGA-F5-6814-01 1 144915524 144915524 C A PDE4DIP Missense_Mutation p.R634L 0.22 deleterious(0.02) benign(0.045) TCGA-F5-6814-01 1 144930820 144930820 C A PDE4DIP Intron 0.14 TCGA-F5-6814-01 1 145015957 145015957 C A RP11-326G21.1 5'Flank 0.09 TCGA-F5-6814-01 1 145109682 145109682 T G SEC22B Intron 0.09 TCGA-F5-6814-01 1 145282071 145282071 A G NOTCH2NL 3'UTR 0.10 TCGA-F5-6814-01 1 145417006 145417006 G T HFE2 3'UTR 0.30 TCGA-F5-6814-01 1 145438828 145438828 C A TXNIP Missense_Mutation p.S9Y 0.23 deleterious(0.01) benign(0.054) TCGA-F5-6814-01 1 145558863 145558863 C T ANKRD35 Missense_Mutation p.S161L 0.15 deleterious(0) benign(0.015) TCGA-F5-6814-01 1 145562427 145562427 G A ANKRD35 Nonsense_Mutation p.W705* 0.40 TCGA-F5-6814-01 1 145601614 145601614 G A POLR3C Silent p.S264S 0.18 TCGA-F5-6814-01 1 145663182 145663182 G A RNF115 Silent p.T81T 0.34 TCGA-F5-6814-01 1 145686979 145686979 T C RNF115 Missense_Mutation p.M224T 0.22 tolerated(0.77) benign(0) TCGA-F5-6814-01 1 145787816 145787816 G T GPR89A Missense_Mutation p.L289I 0.07 tolerated(0.07) benign(0.219) TCGA-F5-6814-01 1 145816737 145816737 G A GPR89A Missense_Mutation p.R36C 0.32 deleterious(0.01) possibly_damaging(0.836) TCGA-F5-6814-01 1 1459249 1459249 G A ATAD3A Missense_Mutation p.A380T 0.33 tolerated(0.09) possibly_damaging(0.699) TCGA-F5-6814-01 1 1463114 1463114 C T ATAD3A Silent p.F507F 0.22 TCGA-F5-6814-01 1 146638081 146638081 A G PRKAB2 Silent p.C178C 0.09 TCGA-F5-6814-01 1 146656108 146656108 C A FMO5 3'Flank 0.30 TCGA-F5-6814-01 1 146658627 146658627 C T FMO5 Missense_Mutation p.R485Q 0.44 deleterious(0.01) probably_damaging(0.988) TCGA-F5-6814-01 1 146696521 146696521 C A FMO5 Missense_Mutation p.R34M 0.46 deleterious(0.01) benign(0.257) TCGA-F5-6814-01 1 147380211 147380211 C T GJA8 Silent p.F43F 0.24 TCGA-F5-6814-01 1 147408789 147408789 A C GPR89B Missense_Mutation p.K31Q 0.39 deleterious(0) benign(0.206) TCGA-F5-6814-01 1 149398958 149398958 G A HIST2H3PS2 3'Flank 0.28 TCGA-F5-6814-01 1 149399222 149399222 G A HIST2H3PS2 3'Flank 0.15 TCGA-F5-6814-01 1 149761767 149761767 G A FCGR1A Silent p.R239R 0.41 TCGA-F5-6814-01 1 150064438 150064438 G T VPS45 Nonsense_Mutation p.G436* 0.14 TCGA-F5-6814-01 1 150204119 150204119 C T ANP32E Missense_Mutation p.R67Q 0.24 tolerated(0.09) possibly_damaging(0.545) TCGA-F5-6814-01 1 150239859 150239859 A G APH1A Silent p.G126G 0.31 TCGA-F5-6814-01 1 150529442 150529443 - T ADAMTSL4 Frame_Shift_Ins p.Y595Lfs*13 0.33 TCGA-F5-6814-01 1 150680838 150680838 C A HORMAD1 Missense_Mutation p.K147N 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 150705443 150705443 C A CTSS 3'UTR 0.35 TCGA-F5-6814-01 1 150772108 150772108 C A CTSK Missense_Mutation p.E232D 0.24 deleterious(0) probably_damaging(0.96) TCGA-F5-6814-01 1 150931733 150931733 C T SETDB1 Missense_Mutation p.R804W 0.40 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 151039874 151039874 G T MLLT11 Missense_Mutation p.E58D 0.35 tolerated(0.46) possibly_damaging(0.54) TCGA-F5-6814-01 1 151070452 151070452 C A GABPB2 Missense_Mutation p.S199Y 0.30 deleterious(0.05) benign(0.439) TCGA-F5-6814-01 1 151090894 151090894 A C GABPB2 3'UTR 0.32 TCGA-F5-6814-01 1 151263197 151263197 G A ZNF687 Missense_Mutation p.G1076S 0.19 tolerated(0.26) benign(0.019) TCGA-F5-6814-01 1 151339278 151339278 C T SELENBP1 Missense_Mutation p.R195Q 0.45 deleterious(0.04) benign(0.327) TCGA-F5-6814-01 1 151378192 151378192 A C POGZ Missense_Mutation p.F1107V 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-F5-6814-01 1 151552161 151552161 G A TUFT1 Missense_Mutation p.A321T 0.26 tolerated(0.79) benign(0.004) TCGA-F5-6814-01 1 151641067 151641067 C A SNX27 Missense_Mutation p.L369I 0.36 tolerated(0.15) benign(0.225) TCGA-F5-6814-01 1 151665923 151665923 C T SNX27 Silent p.F514F 0.36 TCGA-F5-6814-01 1 151665938 151665938 C T SNX27 Silent p.C519C 0.39 TCGA-F5-6814-01 1 151773506 151773506 T C LINGO4 Missense_Mutation p.K559E 0.28 deleterious(0) benign(0.332) TCGA-F5-6814-01 1 152057618 152057618 G T TCHHL1 Missense_Mutation p.S847Y 0.21 deleterious(0.03) benign(0.395) TCGA-F5-6814-01 1 152084882 152084882 G A TCHH Missense_Mutation p.L271F 0.29 unknown(0) TCGA-F5-6814-01 1 152127822 152127822 G T RPTN Missense_Mutation p.Q585K 0.35 deleterious(0.01) benign(0.347) TCGA-F5-6814-01 1 152129382 152129382 G A RPTN Nonsense_Mutation p.R65* 0.13 TCGA-F5-6814-01 1 152275558 152275558 G T FLG Nonsense_Mutation p.S3935* 0.20 TCGA-F5-6814-01 1 152283719 152283719 T G FLG Missense_Mutation p.S1215R 0.18 benign(0.307) TCGA-F5-6814-01 1 152285808 152285808 T C FLG Silent p.G518G 0.12 TCGA-F5-6814-01 1 152287052 152287052 G A FLG Missense_Mutation p.H104Y 0.09 possibly_damaging(0.828) TCGA-F5-6814-01 1 152324352 152324352 T C FLG2 Silent p.T1970T 0.12 TCGA-F5-6814-01 1 152328151 152328151 G T FLG2 Missense_Mutation p.S704Y 0.14 unknown(0) TCGA-F5-6814-01 1 152328690 152328690 G A FLG2 Silent p.V524V 0.40 TCGA-F5-6814-01 1 152383085 152383085 G A CRNN Missense_Mutation p.A158V 0.12 deleterious(0) benign(0.258) TCGA-F5-6814-01 1 152586383 152586383 G A LCE3B Missense_Mutation p.A33T 0.25 tolerated_low_confidence(0.09) unknown(0) TCGA-F5-6814-01 1 152636833 152636833 C T LCE2D Silent p.R84R 0.11 TCGA-F5-6814-01 1 152637128 152637128 A G LCE2D 3'UTR 0.17 TCGA-F5-6814-01 1 152671477 152671477 G A LCE2A Missense_Mutation p.A34T 0.09 tolerated(0.43) unknown(0) TCGA-F5-6814-01 1 152681551 152681551 G T LCE4A 5'UTR 0.14 TCGA-F5-6814-01 1 152732277 152732277 G T KPRP Missense_Mutation p.Q71H 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-F5-6814-01 1 152733791 152733791 G T KPRP Missense_Mutation p.S576I 0.34 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-F5-6814-01 1 152734228 152734228 G T KPRP 3'UTR 0.40 TCGA-F5-6814-01 1 152816275 152816275 C T LCE6A 3'UTR 0.43 TCGA-F5-6814-01 1 152882704 152882704 A G IVL Missense_Mutation p.Q144R 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-F5-6814-01 1 152944441 152944441 G A SPRR4 Silent p.Q25Q 0.17 TCGA-F5-6814-01 1 153042882 153042882 C A SPRR2B 3'UTR 0.47 TCGA-F5-6814-01 1 153513890 153513890 G A S100A5 5'UTR 0.36 TCGA-F5-6814-01 1 153513928 153513928 T C S100A5 5'UTR 0.10 TCGA-F5-6814-01 1 153636895 153636895 G A ILF2 Silent p.F211F 0.33 TCGA-F5-6814-01 1 153744937 153744937 G C INTS3 Intron 0.14 TCGA-F5-6814-01 1 153789054 153789054 G T GATAD2B Missense_Mutation p.S304Y 0.10 deleterious(0.01) possibly_damaging(0.61) TCGA-F5-6814-01 1 153921821 153921821 G A CRTC2 Missense_Mutation p.R482W 0.23 deleterious(0.03) probably_damaging(0.982) TCGA-F5-6814-01 1 153923773 153923773 G A CRTC2 Missense_Mutation p.S456L 0.22 deleterious(0.04) probably_damaging(0.945) TCGA-F5-6814-01 1 153948312 153948312 C A JTB Nonsense_Mutation p.E92* 0.40 TCGA-F5-6814-01 1 153955053 153955053 T G RAB13 Silent p.R146R 0.13 TCGA-F5-6814-01 1 153955100 153955100 G T RAB13 Intron 0.55 TCGA-F5-6814-01 1 153965409 153965409 A C NUP210L Missense_Mutation p.F1857V 0.33 tolerated(0.5) benign(0.005) TCGA-F5-6814-01 1 154029380 154029380 G A NUP210L Nonsense_Mutation p.R1051* 0.32 TCGA-F5-6814-01 1 154144906 154144906 T G TPM3 Intron 0.35 TCGA-F5-6814-01 1 154164477 154164477 C A TPM3 Missense_Mutation p.K6N 0.15 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 154246038 154246038 G A HAX1 Missense_Mutation p.D94N 0.38 tolerated(0.12) benign(0.001) TCGA-F5-6814-01 1 154295538 154295538 T G AQP10 Missense_Mutation p.L105V 0.33 tolerated(0.31) benign(0.189) TCGA-F5-6814-01 1 154295586 154295586 C A AQP10 Missense_Mutation p.L121I 0.33 tolerated(0.36) benign(0.259) TCGA-F5-6814-01 1 154296472 154296472 T G AQP10 Intron 0.27 TCGA-F5-6814-01 1 154297050 154297050 G T AQP10 3'UTR 0.43 TCGA-F5-6814-01 1 15429948 15429948 G A KAZN Missense_Mutation p.D625N 0.12 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 154303960 154303960 C A ATP8B2 Missense_Mutation p.S148Y 0.28 deleterious(0.04) probably_damaging(0.997) TCGA-F5-6814-01 1 154317798 154317798 C T ATP8B2 Missense_Mutation p.T857M 0.30 deleterious(0.04) possibly_damaging(0.599) TCGA-F5-6814-01 1 154459092 154459092 C A SHE Missense_Mutation p.K364N 0.35 deleterious(0.04) possibly_damaging(0.889) TCGA-F5-6814-01 1 154514539 154514539 G A TDRD10 Missense_Mutation p.A137T 0.45 tolerated(1) benign(0) TCGA-F5-6814-01 1 154680700 154680700 C T KCNN3 Missense_Mutation p.E650K 0.19 tolerated(0.05) probably_damaging(0.992) TCGA-F5-6814-01 1 154947250 154947250 A G CKS1B Missense_Mutation p.D10G 0.24 deleterious(0.01) benign(0.139) TCGA-F5-6814-01 1 155018326 155018326 G T DCST1 Intron 0.56 TCGA-F5-6814-01 1 155156326 155156326 C T TRIM46 Missense_Mutation p.A647V 0.31 tolerated(0.57) possibly_damaging(0.523) TCGA-F5-6814-01 1 155159827 155159827 C A MUC1 Missense_Mutation p.K409N 0.22 deleterious(0) probably_damaging(0.977) TCGA-F5-6814-01 1 155186183 155186183 C T MTX1 3'Flank 0.44 TCGA-F5-6814-01 1 155224447 155224447 G T FAM189B Missense_Mutation p.F74L 0.22 tolerated(0.06) probably_damaging(0.989) TCGA-F5-6814-01 1 155584613 155584613 C A MSTO1 3'UTR 0.38 TCGA-F5-6814-01 1 155646492 155646492 T A YY1AP1 Silent p.I195I 0.38 TCGA-F5-6814-01 1 155734760 155734760 G A GON4L Intron 0.32 TCGA-F5-6814-01 1 155792090 155792090 C T GON4L Missense_Mutation p.R292Q 0.09 deleterious(0) benign(0.417) TCGA-F5-6814-01 1 155851084 155851084 G T SYT11 Nonsense_Mutation p.E361* 0.34 TCGA-F5-6814-01 1 156132864 156132864 G T SEMA4A Missense_Mutation p.E371D 0.42 tolerated(0.62) benign(0.004) TCGA-F5-6814-01 1 156214566 156214566 C T PAQR6 Missense_Mutation p.R143H 0.27 tolerated_low_confidence(0.05) possibly_damaging(0.509) TCGA-F5-6814-01 1 156255360 156255360 G A TMEM79 Missense_Mutation p.E115K 0.37 tolerated(0.16) benign(0.004) TCGA-F5-6814-01 1 156280743 156280743 G A CCT3 Missense_Mutation p.R467W 0.17 deleterious(0) benign(0.101) TCGA-F5-6814-01 1 156286972 156286972 T G CCT3 Missense_Mutation p.N320T 0.39 tolerated(0.11) probably_damaging(0.993) TCGA-F5-6814-01 1 156374382 156374382 C A C1orf61 Missense_Mutation p.K145N 0.36 tolerated_low_confidence(0.44) benign(0.003) TCGA-F5-6814-01 1 156452306 156452306 C T MEF2D Missense_Mutation p.D61N 0.42 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 1 156510676 156510676 G A IQGAP3 Missense_Mutation p.R855C 0.25 tolerated(0.08) benign(0.052) TCGA-F5-6814-01 1 156553640 156553640 G A TTC24 Missense_Mutation p.V402M 0.38 tolerated(1) benign(0.006) TCGA-F5-6814-01 1 156617392 156617392 G A BCAN Missense_Mutation p.A187T 0.43 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 156642072 156642072 C A NES Missense_Mutation p.M636I 0.42 tolerated(0.25) benign(0.004) TCGA-F5-6814-01 1 156642800 156642800 G A NES Missense_Mutation p.P394S 0.36 tolerated(0.32) benign(0.232) TCGA-F5-6814-01 1 156642838 156642838 C T NES Missense_Mutation p.R381H 0.34 tolerated(0.28) benign(0.016) TCGA-F5-6814-01 1 156693183 156693183 G A ISG20L2 Silent p.V340V 0.13 TCGA-F5-6814-01 1 156882362 156882362 G T PEAR1 Missense_Mutation p.E719D 0.29 tolerated(0.51) benign(0.15) TCGA-F5-6814-01 1 15701088 15701088 C T FHAD1 Nonsense_Mutation p.R393* 0.11 TCGA-F5-6814-01 1 157490932 157490932 G T FCRL5 Nonsense_Mutation p.S797* 0.36 TCGA-F5-6814-01 1 157509104 157509104 A C FCRL5 Missense_Mutation p.F392V 0.27 tolerated(0.67) benign(0.007) TCGA-F5-6814-01 1 157559114 157559114 A G FCRL4 Missense_Mutation p.W63R 0.10 tolerated(0.36) benign(0.001) TCGA-F5-6814-01 1 157567773 157567773 G T FCRL4 5'UTR 0.46 TCGA-F5-6814-01 1 157650501 157650501 C A FCRL3 Nonsense_Mutation p.E673* 0.35 TCGA-F5-6814-01 1 157650787 157650787 C A FCRL3 Missense_Mutation p.E647D 0.13 deleterious(0.03) benign(0.01) TCGA-F5-6814-01 1 157666959 157666959 C A FCRL3 Missense_Mutation p.R272M 0.29 deleterious(0.04) possibly_damaging(0.863) TCGA-F5-6814-01 1 157736741 157736741 C A FCRL2 Missense_Mutation p.D395Y 0.40 tolerated(0.06) benign(0.062) TCGA-F5-6814-01 1 157737108 157737108 T C FCRL2 Missense_Mutation p.T359A 0.12 deleterious(0.02) probably_damaging(0.911) TCGA-F5-6814-01 1 157740212 157740212 C A FCRL2 Missense_Mutation p.K99N 0.24 tolerated(0.24) benign(0.021) TCGA-F5-6814-01 1 157765704 157765704 C A FCRL1 3'UTR 0.40 TCGA-F5-6814-01 1 15817909 15817909 T C CASP9 3'Flank 0.36 TCGA-F5-6814-01 1 158262000 158262000 C A CD1C Missense_Mutation p.S152Y 0.21 deleterious(0.02) benign(0.328) TCGA-F5-6814-01 1 158298012 158298012 G T CD1B 3'UTR 0.50 TCGA-F5-6814-01 1 158326491 158326491 G T CD1E Intron 0.25 TCGA-F5-6814-01 1 158369144 158369144 G A OR10T2 Missense_Mutation p.T38I 0.24 tolerated(0.58) benign(0.282) TCGA-F5-6814-01 1 158517328 158517328 G T OR6Y1 Missense_Mutation p.L190I 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 1 158517841 158517841 G A OR6Y1 Missense_Mutation p.L19F 0.28 tolerated(0.06) possibly_damaging(0.606) TCGA-F5-6814-01 1 158533055 158533055 G A OR6P1 Silent p.L114L 0.25 TCGA-F5-6814-01 1 158533191 158533191 G A OR6P1 Silent p.F68F 0.37 TCGA-F5-6814-01 1 158548707 158548707 G T OR10X1 3'Flank 0.08 TCGA-F5-6814-01 1 158549600 158549600 A C OR10X1 Silent p.L30L 0.22 TCGA-F5-6814-01 1 158587379 158587379 C A SPTA1 Splice_Site p.X2183_splice 0.22 TCGA-F5-6814-01 1 158596681 158596681 A C SPTA1 Missense_Mutation p.D1927E 0.39 tolerated(0.09) benign(0.015) TCGA-F5-6814-01 1 158623073 158623073 A C SPTA1 Missense_Mutation p.I1060S 0.38 deleterious(0) possibly_damaging(0.851) TCGA-F5-6814-01 1 158637750 158637750 C A SPTA1 Nonsense_Mutation p.E646* 0.48 TCGA-F5-6814-01 1 158644349 158644349 T C SPTA1 Missense_Mutation p.D410G 0.46 tolerated(0.06) possibly_damaging(0.895) TCGA-F5-6814-01 1 158654916 158654916 T G SPTA1 Missense_Mutation p.E82D 0.21 deleterious(0) benign(0.073) TCGA-F5-6814-01 1 158746477 158746477 G T OR6N2 Missense_Mutation p.L317I 0.29 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 1 158746520 158746520 C A OR6N2 Missense_Mutation p.K302N 0.38 deleterious(0.04) benign(0.305) TCGA-F5-6814-01 1 158812066 158812066 G T MNDA Missense_Mutation p.E41D 0.42 tolerated(0.62) benign(0.017) TCGA-F5-6814-01 1 158812191 158812191 G A MNDA Missense_Mutation p.R83Q 0.37 tolerated(0.05) benign(0.442) TCGA-F5-6814-01 1 1588825 1588825 A G CDK11B Silent p.N37N 0.15 TCGA-F5-6814-01 1 158990161 158990161 G A IFI16 Missense_Mutation p.E335K 0.41 deleterious(0.01) possibly_damaging(0.902) TCGA-F5-6814-01 1 159021682 159021682 A G IFI16 Missense_Mutation p.K571E 0.10 tolerated(0.05) benign(0.205) TCGA-F5-6814-01 1 159033440 159033440 A C AIM2 Missense_Mutation p.L281V 0.33 tolerated(0.48) benign(0.342) TCGA-F5-6814-01 1 159043265 159043265 G T AIM2 Missense_Mutation p.L9I 0.27 tolerated(0.28) probably_damaging(0.998) TCGA-F5-6814-01 1 15906623 15906623 T G AGMAT Missense_Mutation p.I164L 0.40 tolerated(0.22) benign(0.196) TCGA-F5-6814-01 1 159163251 159163251 T G CADM3 Missense_Mutation p.S175A 0.53 tolerated(0.43) benign(0.002) TCGA-F5-6814-01 1 159163341 159163341 G T CADM3 Nonsense_Mutation p.E205* 0.58 TCGA-F5-6814-01 1 159170625 159170625 C T CADM3 Silent p.S404S 0.38 TCGA-F5-6814-01 1 159277548 159277548 G T FCER1A Missense_Mutation p.E200D 0.28 tolerated(0.25) benign(0) TCGA-F5-6814-01 1 159558012 159558012 C T APCS Silent p.L62L 0.48 TCGA-F5-6814-01 1 159684291 159684291 C T CRP 5'UTR 0.38 TCGA-F5-6814-01 1 159807724 159807724 C T C1orf204 Missense_Mutation p.S231N 0.08 tolerated_low_confidence(0.16) benign(0.002) TCGA-F5-6814-01 1 159832314 159832314 C A VSIG8 5'UTR 0.11 TCGA-F5-6814-01 1 159832343 159832343 C T VSIG8 5'UTR 0.12 TCGA-F5-6814-01 1 15987284 15987284 T C RSC1A1 Silent p.T307T 0.50 TCGA-F5-6814-01 1 160111220 160111220 T C ATP1A2 3'UTR 0.21 TCGA-F5-6814-01 1 160121883 160121883 G T ATP1A4 Missense_Mutation p.R18I 0.41 tolerated_low_confidence(0.17) benign(0.02) TCGA-F5-6814-01 1 160143456 160143456 C T ATP1A4 Missense_Mutation p.A647V 0.12 tolerated(1) benign(0.017) TCGA-F5-6814-01 1 160178391 160178391 T C PEA15 Intron 0.25 TCGA-F5-6814-01 1 160206934 160206934 C T DCAF8 Missense_Mutation p.R317H 0.14 deleterious(0.04) benign(0.01) TCGA-F5-6814-01 1 160295386 160295386 T C COPA Missense_Mutation p.T185A 0.09 tolerated(0.64) benign(0.002) TCGA-F5-6814-01 1 160340395 160340395 C A NHLH1 5'UTR 0.39 TCGA-F5-6814-01 1 160342563 160342563 C A NHLH1 3'UTR 0.36 TCGA-F5-6814-01 1 160520812 160520812 C A CD84 Missense_Mutation p.K275N 0.38 tolerated(0.05) benign(0.126) TCGA-F5-6814-01 1 16060342 16060342 C A PLEKHM2 Missense_Mutation p.F991L 0.10 tolerated(0.19) benign(0.003) TCGA-F5-6814-01 1 160607113 160607113 G A SLAMF1 Missense_Mutation p.R95C 0.29 deleterious(0.02) probably_damaging(0.951) TCGA-F5-6814-01 1 160654836 160654836 A G CD48 Missense_Mutation p.Y76H 0.10 deleterious(0.02) probably_damaging(0.984) TCGA-F5-6814-01 1 16065863 16065863 C T SLC25A34 Missense_Mutation p.R293W 0.22 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 160766061 160766061 C A LY9 Missense_Mutation p.F28L 0.15 tolerated(0.14) benign(0.134) TCGA-F5-6814-01 1 160968530 160968530 G A F11R 3'UTR 0.27 TCGA-F5-6814-01 1 161018063 161018063 G A ARHGAP30 Silent p.G916G 0.33 TCGA-F5-6814-01 1 161029459 161029459 C A ARHGAP30 Missense_Mutation p.V49L 0.18 deleterious(0.02) possibly_damaging(0.616) TCGA-F5-6814-01 1 161071929 161071929 T G PFDN2 Missense_Mutation p.E66A 0.12 tolerated(0.23) benign(0.017) TCGA-F5-6814-01 1 161185097 161185097 G A FCER1G 5'UTR 0.22 TCGA-F5-6814-01 1 161334890 161334890 C A C1orf192 Missense_Mutation p.K133N 0.37 deleterious_low_confidence(0.03) benign(0.016) TCGA-F5-6814-01 1 161494910 161494910 C A HSPA6 Missense_Mutation p.D154E 0.25 deleterious_low_confidence(0) benign(0.397) TCGA-F5-6814-01 1 161496577 161496577 T G HSPA6 3'UTR 0.28 TCGA-F5-6814-01 1 161512961 161512961 G T FCGR3A Missense_Mutation p.F238L 0.34 tolerated(0.97) benign(0.002) TCGA-F5-6814-01 1 161594371 161594371 G T FCGR3B Nonsense_Mutation p.C248* 0.15 TCGA-F5-6814-01 1 161600848 161600848 G T FCGR3B Missense_Mutation p.L49I 0.16 deleterious(0.03) possibly_damaging(0.58) TCGA-F5-6814-01 1 161654913 161654913 G T RPL31P11 RNA 0.52 TCGA-F5-6814-01 1 161681745 161681745 T C FCRLA Missense_Mutation p.L197P 0.17 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 161695929 161695929 C T FCRLB Intron 0.27 TCGA-F5-6814-01 1 161721708 161721708 G A DUSP12 Missense_Mutation p.E171K 0.31 tolerated(0.33) benign(0.059) TCGA-F5-6814-01 1 161751702 161751702 G A ATF6 Missense_Mutation p.E54K 0.33 tolerated(0.16) benign(0.169) TCGA-F5-6814-01 1 161968062 161968062 T C OLFML2B Missense_Mutation p.T343A 0.37 tolerated(0.72) benign(0.001) TCGA-F5-6814-01 1 161969992 161969992 C T OLFML2B Missense_Mutation p.G287D 0.18 deleterious(0.04) benign(0.123) TCGA-F5-6814-01 1 161970074 161970074 C T OLFML2B Missense_Mutation p.E260K 0.36 tolerated(0.3) benign(0.003) TCGA-F5-6814-01 1 162492195 162492195 T C UHMK1 Missense_Mutation p.V372A 0.23 tolerated(0.09) probably_damaging(0.998) TCGA-F5-6814-01 1 162535808 162535808 A T UAP1 5'UTR 0.41 TCGA-F5-6814-01 1 16255862 16255862 G T SPEN Nonsense_Mutation p.E1043* 0.35 TCGA-F5-6814-01 1 162560164 162560164 G T UAP1 Missense_Mutation p.K407N 0.16 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 16258201 16258201 G A SPEN Silent p.K1822K 0.34 TCGA-F5-6814-01 1 162743378 162743378 G T DDR2 Missense_Mutation p.K616N 0.29 deleterious(0.02) benign(0.208) TCGA-F5-6814-01 1 162745490 162745490 A G DDR2 Silent p.P635P 0.29 TCGA-F5-6814-01 1 162825526 162825526 G T C1orf110 Missense_Mutation p.F70L 0.18 tolerated(0.59) benign(0.092) TCGA-F5-6814-01 1 163042198 163042198 A G RGS4 Missense_Mutation p.K117E 0.21 deleterious(0) possibly_damaging(0.728) TCGA-F5-6814-01 1 163044308 163044308 G A RGS4 Silent p.K289K 0.16 TCGA-F5-6814-01 1 163172616 163172616 C A RGS5 Nonsense_Mutation p.G4* 0.54 TCGA-F5-6814-01 1 16383664 16383664 C T CLCNKB 3'UTR 0.16 TCGA-F5-6814-01 1 16386046 16386046 G T FAM131C Missense_Mutation p.L169M 0.26 tolerated(0.11) probably_damaging(0.989) TCGA-F5-6814-01 1 165532890 165532890 C T LRRC52 Silent p.A257A 0.43 TCGA-F5-6814-01 1 165667634 165667634 T G ALDH9A1 Missense_Mutation p.K54N 0.45 tolerated(0.36) benign(0.005) TCGA-F5-6814-01 1 165712439 165712439 A C TMCO1 Missense_Mutation p.F196V 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 165712549 165712549 C A TMCO1 Splice_Site p.X159_splice 0.28 TCGA-F5-6814-01 1 16577466 16577466 G T FBXO42 Missense_Mutation p.A618D 0.20 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F5-6814-01 1 166039397 166039397 T G FAM78B 3'UTR 0.47 TCGA-F5-6814-01 1 166815902 166815902 A C POGK Missense_Mutation p.E62D 0.08 tolerated_low_confidence(0.29) benign(0.003) TCGA-F5-6814-01 1 166815940 166815940 T G POGK Missense_Mutation p.V75G 0.10 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-F5-6814-01 1 166974561 166974561 C A MAEL Missense_Mutation p.L258I 0.41 tolerated(0.25) benign(0.045) TCGA-F5-6814-01 1 166974588 166974588 C T MAEL Nonsense_Mutation p.R267* 0.45 TCGA-F5-6814-01 1 167096841 167096841 A T DUSP27 Missense_Mutation p.S825C 0.42 deleterious(0) probably_damaging(0.94) TCGA-F5-6814-01 1 167358898 167358898 G A POU2F1 Missense_Mutation p.R296Q 0.27 tolerated(0.08) unknown(0) TCGA-F5-6814-01 1 16774457 16774457 G A NECAP2 Missense_Mutation p.E96K 0.37 tolerated(0.15) benign(0.038) TCGA-F5-6814-01 1 167757165 167757165 A G MPZL1 3'UTR 0.23 TCGA-F5-6814-01 1 167787447 167787447 G T ADCY10 Missense_Mutation p.L1449I 0.18 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 167805745 167805745 G T ADCY10 Missense_Mutation p.F1037L 0.34 tolerated(0.06) benign(0.013) TCGA-F5-6814-01 1 167805747 167805747 A C ADCY10 Missense_Mutation p.F1037V 0.34 deleterious(0.02) benign(0.313) TCGA-F5-6814-01 1 167849396 167849396 G T ADCY10 Silent p.V391V 0.29 TCGA-F5-6814-01 1 167973179 167973179 A C DCAF6 Missense_Mutation p.S357R 0.36 deleterious(0) probably_damaging(0.983) TCGA-F5-6814-01 1 167973817 167973817 A G DCAF6 Silent p.S388S 0.35 TCGA-F5-6814-01 1 168014265 168014265 A C DCAF6 Missense_Mutation p.E686D 0.36 tolerated_low_confidence(0.3) benign(0.009) TCGA-F5-6814-01 1 168065841 168065841 A C GPR161 Missense_Mutation p.L355R 0.15 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 168169174 168169174 G T TIPRL Nonsense_Mutation p.E237* 0.23 TCGA-F5-6814-01 1 168215580 168215580 C T SFT2D2 3'UTR 0.29 TCGA-F5-6814-01 1 168215912 168215912 G T SFT2D2 3'UTR 0.12 TCGA-F5-6814-01 1 168250317 168250317 C T TBX19 5'UTR 0.50 TCGA-F5-6814-01 1 168550598 168550598 C T XCL1 3'UTR 0.20 TCGA-F5-6814-01 1 169096484 169096484 A G ATP1B1 Silent p.E135E 0.38 TCGA-F5-6814-01 1 169346309 169346309 A G BLZF1 Intron 0.08 TCGA-F5-6814-01 1 169366598 169366598 C T CCDC181 Missense_Mutation p.R415Q 0.35 tolerated(0.06) benign(0.034) TCGA-F5-6814-01 1 169388367 169388367 C A CCDC181 Nonsense_Mutation p.E367* 0.35 TCGA-F5-6814-01 1 169487731 169487731 C T F5 Silent p.K2088K 0.14 TCGA-F5-6814-01 1 169495164 169495164 T G F5 Missense_Mutation p.Q1897H 0.12 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 1 169500192 169500192 T C F5 Silent p.S1680S 0.28 TCGA-F5-6814-01 1 169511453 169511453 T G F5 Missense_Mutation p.I959L 0.21 deleterious(0.03) benign(0.081) TCGA-F5-6814-01 1 169670673 169670673 C A SELL Intron 0.44 TCGA-F5-6814-01 1 169677840 169677840 A C SELL Missense_Mutation p.L77V 0.10 deleterious(0) possibly_damaging(0.856) TCGA-F5-6814-01 1 169677886 169677886 C A SELL Missense_Mutation p.M61I 0.21 deleterious(0.04) possibly_damaging(0.846) TCGA-F5-6814-01 1 169698458 169698458 G A SELE Missense_Mutation p.S320F 0.41 deleterious(0) probably_damaging(0.928) TCGA-F5-6814-01 1 169941736 169941736 G A KIFAP3 Missense_Mutation p.A634V 0.28 tolerated(0.07) probably_damaging(0.936) TCGA-F5-6814-01 1 170129770 170129770 A C METTL11B Missense_Mutation p.N89T 0.25 deleterious(0.01) benign(0.111) TCGA-F5-6814-01 1 170967344 170967344 C A MROH9 Missense_Mutation p.L509I 0.32 deleterious(0.01) possibly_damaging(0.803) TCGA-F5-6814-01 1 170983315 170983315 A C MROH9 Missense_Mutation p.N552H 0.32 deleterious(0.01) probably_damaging(0.983) TCGA-F5-6814-01 1 170993555 170993555 G T MROH9 Missense_Mutation p.S643I 0.14 deleterious(0.01) possibly_damaging(0.845) TCGA-F5-6814-01 1 171083297 171083297 C A FMO3 Silent p.I326I 0.35 TCGA-F5-6814-01 1 171086593 171086593 C A FMO3 3'UTR 0.64 TCGA-F5-6814-01 1 171116779 171116779 C T FMO6P Nonsense_Mutation p.R167* 0.47 TCGA-F5-6814-01 1 171247928 171247928 T G FMO1 Missense_Mutation p.F182C 0.09 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 171303641 171303641 G T FMO4 Nonsense_Mutation p.E307* 0.21 TCGA-F5-6814-01 1 171303744 171303744 T G FMO4 Missense_Mutation p.L341R 0.17 deleterious(0) probably_damaging(0.917) TCGA-F5-6814-01 1 171310964 171310964 C A FMO4 Missense_Mutation p.L555I 0.33 tolerated_low_confidence(0.69) benign(0.001) TCGA-F5-6814-01 1 171511038 171511038 C T PRRC2C Missense_Mutation p.S1476F 0.28 unknown(0) TCGA-F5-6814-01 1 171526509 171526509 C T PRRC2C Missense_Mutation p.S1751L 0.33 unknown(0) TCGA-F5-6814-01 1 171621743 171621743 G T MYOC Missense_Mutation p.F3L 0.18 deleterious_low_confidence(0) possibly_damaging(0.483) TCGA-F5-6814-01 1 171756946 171756946 C T METTL13 Silent p.S395S 0.26 TCGA-F5-6814-01 1 1722019 1722019 C T GNB1 Missense_Mutation p.E172K 0.27 deleterious(0.02) benign(0.261) TCGA-F5-6814-01 1 172410951 172410951 C T PIGC Missense_Mutation p.R271H 0.21 tolerated(0.59) benign(0.009) TCGA-F5-6814-01 1 172413138 172413138 C A PIGC 5'UTR 0.10 TCGA-F5-6814-01 1 172526921 172526921 A G SUCO Missense_Mutation p.N240S 0.17 tolerated(0.12) benign(0.005) TCGA-F5-6814-01 1 172538254 172538254 G T SUCO Missense_Mutation p.K276N 0.34 deleterious(0) possibly_damaging(0.792) TCGA-F5-6814-01 1 172558187 172558187 G A SUCO Missense_Mutation p.R649Q 0.42 tolerated(0.11) benign(0.095) TCGA-F5-6814-01 1 172558459 172558459 G T SUCO Nonsense_Mutation p.E740* 0.29 TCGA-F5-6814-01 1 172558595 172558595 G T SUCO Missense_Mutation p.S785I 0.09 tolerated(0.08) benign(0.027) TCGA-F5-6814-01 1 172558630 172558630 A C SUCO Missense_Mutation p.N797H 0.29 deleterious(0.03) benign(0.289) TCGA-F5-6814-01 1 172579060 172579060 G A SUCO Silent p.T1142T 0.27 TCGA-F5-6814-01 1 173019993 173019993 C A TNFSF18 Missense_Mutation p.R37I 0.39 deleterious(0.02) benign(0.067) TCGA-F5-6814-01 1 17322756 17322756 C T ATP13A2 Missense_Mutation p.R449Q 0.49 tolerated(0.27) possibly_damaging(0.595) TCGA-F5-6814-01 1 173502858 173502858 C A SLC9C2 Missense_Mutation p.D685Y 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 173503693 173503693 A C SLC9C2 Nonsense_Mutation p.L635* 0.19 TCGA-F5-6814-01 1 173542454 173542454 T G SLC9C2 Missense_Mutation p.I305L 0.25 tolerated(0.2) benign(0.012) TCGA-F5-6814-01 1 173552658 173552658 A G SLC9C2 Silent p.F209F 0.37 TCGA-F5-6814-01 1 173567075 173567075 C A SLC9C2 Nonsense_Mutation p.E109* 0.48 TCGA-F5-6814-01 1 173579260 173579260 T G ANKRD45 3'UTR 0.08 TCGA-F5-6814-01 1 173754310 173754310 C T KLHL20 Silent p.G585G 0.30 TCGA-F5-6814-01 1 173797501 173797501 C T DARS2 Silent p.F86F 0.19 TCGA-F5-6814-01 1 173802529 173802529 C T DARS2 Missense_Mutation p.R170W 0.24 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 173806131 173806131 C T DARS2 Silent p.L239L 0.44 TCGA-F5-6814-01 1 173822489 173822489 C A DARS2 Nonsense_Mutation p.C449* 0.15 TCGA-F5-6814-01 1 173839388 173839388 T G ZBTB37 Missense_Mutation p.L9V 0.10 tolerated(0.3) benign(0.107) TCGA-F5-6814-01 1 173921232 173921232 A C RC3H1 Missense_Mutation p.N805K 0.26 tolerated(0.18) benign(0.328) TCGA-F5-6814-01 1 173947709 173947709 G A RC3H1 Missense_Mutation p.A340V 0.22 tolerated(0.52) probably_damaging(0.998) TCGA-F5-6814-01 1 174188365 174188365 G T RABGAP1L Nonsense_Mutation p.E24* 0.33 TCGA-F5-6814-01 1 174418592 174418592 G T GPR52 3'UTR 0.30 TCGA-F5-6814-01 1 174769612 174769612 C T RABGAP1L Intron 0.26 TCGA-F5-6814-01 1 174926642 174926642 C T RABGAP1L Nonsense_Mutation p.R797* 0.32 TCGA-F5-6814-01 1 175092553 175092553 A C TNN Missense_Mutation p.N890H 0.38 tolerated(0.09) probably_damaging(0.994) TCGA-F5-6814-01 1 175375382 175375382 C T TNR Missense_Mutation p.A157T 0.23 tolerated(0.07) benign(0.001) TCGA-F5-6814-01 1 175914015 175914015 G T RFWD2 3'UTR 0.64 TCGA-F5-6814-01 1 176085770 176085770 C T RFWD2 Missense_Mutation p.G339D 0.22 deleterious(0.03) benign(0.021) TCGA-F5-6814-01 1 176526157 176526157 G T PAPPA2 Missense_Mutation p.K233N 0.11 tolerated_low_confidence(0.63) benign(0) TCGA-F5-6814-01 1 176838140 176838140 G T ASTN1 Missense_Mutation p.L1163I 0.29 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 1 176863725 176863725 T C ASTN1 Silent p.E971E 0.25 TCGA-F5-6814-01 1 176992546 176992546 C T ASTN1 Missense_Mutation p.E478K 0.40 deleterious(0) benign(0.15) TCGA-F5-6814-01 1 176992583 176992583 C T ASTN1 Silent p.R465R 0.41 TCGA-F5-6814-01 1 177030397 177030397 G T ASTN1 Silent p.I96I 0.44 TCGA-F5-6814-01 1 177226267 177226267 C T BRINP2 Intron 0.40 TCGA-F5-6814-01 1 17735422 17735422 T G RCC2 3'UTR 0.31 TCGA-F5-6814-01 1 17749329 17749329 C T RCC2 Missense_Mutation p.R176Q 0.31 deleterious(0) possibly_damaging(0.834) TCGA-F5-6814-01 1 177898950 177898950 A C SEC16B 3'UTR 0.10 TCGA-F5-6814-01 1 178414689 178414689 C T RASAL2 Missense_Mutation p.R507C 0.36 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 178490319 178490319 G A TEX35 Intron 0.34 TCGA-F5-6814-01 1 178490359 178490359 G A TEX35 Silent p.E182E 0.32 TCGA-F5-6814-01 1 178834808 178834808 C A ANGPTL1 Missense_Mutation p.R35I 0.07 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 1 179057109 179057109 G A TOR3A Missense_Mutation p.D235N 0.29 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 179095594 179095594 C T ABL2 Missense_Mutation p.S202N 0.11 deleterious(0) probably_damaging(0.966) TCGA-F5-6814-01 1 179338021 179338021 G T AXDND1 Nonsense_Mutation p.E62* 0.33 TCGA-F5-6814-01 1 179338027 179338027 C A AXDND1 Missense_Mutation p.L64I 0.10 tolerated(0.13) possibly_damaging(0.636) TCGA-F5-6814-01 1 179398687 179398687 G T AXDND1 Missense_Mutation p.R422I 0.35 deleterious(0) possibly_damaging(0.766) TCGA-F5-6814-01 1 17944886 17944886 G A ARHGEF10L Intron 0.29 TCGA-F5-6814-01 1 179526215 179526215 G A NPHS2 Nonsense_Mutation p.R229* 0.36 TCGA-F5-6814-01 1 179605015 179605015 G T TDRD5 Nonsense_Mutation p.E505* 0.18 TCGA-F5-6814-01 1 179638383 179638383 T G TDRD5 Missense_Mutation p.F902V 0.16 tolerated(0.05) possibly_damaging(0.447) TCGA-F5-6814-01 1 179820459 179820459 G T TOR1AIP2 Missense_Mutation p.S25Y 0.25 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-F5-6814-01 1 179834418 179834418 C A TOR1AIP2 Intron 0.45 TCGA-F5-6814-01 1 179886931 179886931 C T TOR1AIP1 Missense_Mutation p.R437C 0.21 tolerated(0.08) possibly_damaging(0.803) TCGA-F5-6814-01 1 180023056 180023056 G C CEP350 Missense_Mutation p.E1721Q 0.27 probably_damaging(0.999) TCGA-F5-6814-01 1 180062347 180062347 T C CEP350 Silent p.A2369A 0.34 TCGA-F5-6814-01 1 180382535 180382535 G A ACBD6 Missense_Mutation p.S180L 0.31 deleterious(0.03) benign(0.025) TCGA-F5-6814-01 1 180882399 180882399 C T KIAA1614 Missense_Mutation p.A7V 0.20 tolerated(0.08) benign(0.049) TCGA-F5-6814-01 1 181058869 181058869 C A IER5 Missense_Mutation p.F277L 0.62 deleterious(0) possibly_damaging(0.874) TCGA-F5-6814-01 1 181690901 181690901 C T CACNA1E Missense_Mutation p.T655M 0.34 deleterious(0) benign(0.161) TCGA-F5-6814-01 1 181727971 181727971 A C CACNA1E Missense_Mutation p.E1524D 0.29 deleterious(0) possibly_damaging(0.523) TCGA-F5-6814-01 1 182027037 182027037 C T ZNF648 Missense_Mutation p.D37N 0.38 tolerated_low_confidence(0.06) benign(0.017) TCGA-F5-6814-01 1 182369159 182369159 A G TEDDM1 Silent p.C154C 0.13 TCGA-F5-6814-01 1 182545522 182545522 A C RNASEL Missense_Mutation p.I636M 0.30 deleterious(0.01) possibly_damaging(0.544) TCGA-F5-6814-01 1 182640866 182640866 C T RGS8 Splice_Site p.X3_splice 0.30 TCGA-F5-6814-01 1 182811720 182811720 T G DHX9 Missense_Mutation p.F7V 0.36 deleterious(0.01) possibly_damaging(0.886) TCGA-F5-6814-01 1 182908534 182908534 A C SHCBP1L Intron 0.16 TCGA-F5-6814-01 1 183206618 183206618 G T LAMC2 Missense_Mutation p.Q911H 0.21 deleterious(0) possibly_damaging(0.815) TCGA-F5-6814-01 1 183486908 183486908 G A SMG7 Missense_Mutation p.A89T 0.33 tolerated(0.06) probably_damaging(0.985) TCGA-F5-6814-01 1 183502814 183502814 C A SMG7 Missense_Mutation p.S337Y 0.33 deleterious(0) probably_damaging(0.939) TCGA-F5-6814-01 1 183511311 183511311 C A SMG7 Missense_Mutation p.L506M 0.43 deleterious(0.02) possibly_damaging(0.577) TCGA-F5-6814-01 1 183525226 183525226 C A NCF2 3'UTR 0.08 TCGA-F5-6814-01 1 183542324 183542324 G A NCF2 Missense_Mutation p.A202V 0.21 deleterious(0) possibly_damaging(0.564) TCGA-F5-6814-01 1 183617200 183617200 G T APOBEC4 Missense_Mutation p.F239L 0.37 deleterious(0.05) possibly_damaging(0.526) TCGA-F5-6814-01 1 183711396 183711396 G A RGL1 Missense_Mutation p.R35Q 0.32 tolerated(0.18) benign(0.001) TCGA-F5-6814-01 1 183895541 183895541 T G RGL1 3'UTR 0.29 TCGA-F5-6814-01 1 183942778 183942778 G T COLGALT2 Missense_Mutation p.S200Y 0.33 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 184023900 184023900 G T TSEN15 Nonsense_Mutation p.E86* 0.34 TCGA-F5-6814-01 1 184041968 184041968 C A TSEN15 Missense_Mutation p.S168Y 0.42 deleterious_low_confidence(0.01) benign(0.039) TCGA-F5-6814-01 1 184663294 184663294 A C EDEM3 Missense_Mutation p.V901G 0.07 tolerated_low_confidence(0.38) benign(0.001) TCGA-F5-6814-01 1 184695415 184695415 G A EDEM3 Nonsense_Mutation p.R241* 0.31 TCGA-F5-6814-01 1 184723631 184723631 C T EDEM3 Silent p.Q50Q 0.31 TCGA-F5-6814-01 1 184787811 184787811 C A FAM129A Missense_Mutation p.Q378H 0.12 deleterious(0.04) possibly_damaging(0.464) TCGA-F5-6814-01 1 184792428 184792428 T G FAM129A Missense_Mutation p.Q286H 0.18 tolerated(0.19) benign(0.098) TCGA-F5-6814-01 1 1849469 1849469 A C TMEM52 Missense_Mutation p.V161G 0.23 deleterious(0) probably_damaging(0.961) TCGA-F5-6814-01 1 1849584 1849584 A G TMEM52 Missense_Mutation p.Y123H 0.27 tolerated(0.16) benign(0.26) TCGA-F5-6814-01 1 185069480 185069480 C A RNF2 3'UTR 0.39 TCGA-F5-6814-01 1 185125787 185125787 C T TRMT1L Missense_Mutation p.A20T 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.483) TCGA-F5-6814-01 1 185143639 185143639 T G SWT1 Silent p.T120T 0.12 TCGA-F5-6814-01 1 185151108 185151108 C T SWT1 Missense_Mutation p.R353C 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 185153439 185153439 C A SWT1 Silent p.L401L 0.37 TCGA-F5-6814-01 1 185173946 185173946 C A SWT1 Nonsense_Mutation p.S595* 0.10 TCGA-F5-6814-01 1 185245771 185245771 T G SWT1 Missense_Mutation p.I848M 0.33 deleterious(0) benign(0.001) TCGA-F5-6814-01 1 185270182 185270182 C T IVNS1ABP Missense_Mutation p.E348K 0.19 tolerated(0.51) benign(0.206) TCGA-F5-6814-01 1 185947035 185947035 G T HMCN1 Missense_Mutation p.D830Y 0.12 probably_damaging(0.999) TCGA-F5-6814-01 1 185970500 185970500 C A HMCN1 Silent p.L1380L 0.24 TCGA-F5-6814-01 1 185970549 185970549 G T HMCN1 Missense_Mutation p.D1397Y 0.34 probably_damaging(0.996) TCGA-F5-6814-01 1 185985316 185985316 C T HMCN1 Silent p.C1712C 0.37 TCGA-F5-6814-01 1 186056647 186056647 C A HMCN1 Missense_Mutation p.S3078Y 0.22 probably_damaging(0.998) TCGA-F5-6814-01 1 186062655 186062655 G T HMCN1 Missense_Mutation p.E3350D 0.12 probably_damaging(0.994) TCGA-F5-6814-01 1 186072641 186072641 G T HMCN1 Missense_Mutation p.E3537D 0.09 probably_damaging(0.994) TCGA-F5-6814-01 1 186273293 186273293 G T PRG4 Missense_Mutation p.A125S 0.17 probably_damaging(0.942) TCGA-F5-6814-01 1 186273333 186273333 A C PRG4 Missense_Mutation p.K138T 0.18 probably_damaging(0.997) TCGA-F5-6814-01 1 186275689 186275689 A C PRG4 Missense_Mutation p.K280Q 0.09 possibly_damaging(0.908) TCGA-F5-6814-01 1 186275898 186275898 G A PRG4 Silent p.E349E 0.34 TCGA-F5-6814-01 1 186276741 186276741 G T PRG4 Missense_Mutation p.E630D 0.13 unknown(0) TCGA-F5-6814-01 1 186277838 186277838 A G PRG4 Missense_Mutation p.E996G 0.09 unknown(0) TCGA-F5-6814-01 1 186277995 186277995 G A PRG4 Silent p.T1048T 0.44 TCGA-F5-6814-01 1 186278009 186278009 G A PRG4 Missense_Mutation p.R1053H 0.08 unknown(0) TCGA-F5-6814-01 1 186315421 186315421 T G TPR Splice_Site p.X982_splice 0.16 TCGA-F5-6814-01 1 186337090 186337090 C A TPR Nonsense_Mutation p.E119* 0.35 TCGA-F5-6814-01 1 186645203 186645203 G A PTGS2 Missense_Mutation p.R362C 0.06 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 18688622 18688622 C A IGSF21 Silent p.S146S 0.24 TCGA-F5-6814-01 1 186909116 186909116 T C PLA2G4A Missense_Mutation p.M308T 0.14 tolerated(0.07) probably_damaging(0.95) TCGA-F5-6814-01 1 18703368 18703368 C T IGSF21 Silent p.F392F 0.33 TCGA-F5-6814-01 1 18960970 18960970 C A PAX7 Missense_Mutation p.L87I 0.16 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 190195290 190195290 C A BRINP3 Missense_Mutation p.D295Y 0.36 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 192153494 192153494 T G RGS18 Missense_Mutation p.F173C 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 192617102 192617102 T G RGS13 Missense_Mutation p.L38V 0.20 deleterious(0.01) possibly_damaging(0.631) TCGA-F5-6814-01 1 193029076 193029076 T C UCHL5 5'Flank 0.57 TCGA-F5-6814-01 1 193046142 193046142 T G TROVE2 Missense_Mutation p.L350V 0.15 tolerated(0.53) benign(0.006) TCGA-F5-6814-01 1 193065685 193065685 T G GLRX2 3'UTR 0.16 TCGA-F5-6814-01 1 193119509 193119509 G T CDC73 Nonsense_Mutation p.E302* 0.29 TCGA-F5-6814-01 1 19427044 19427044 G T UBR4 Missense_Mutation p.F4349L 0.36 possibly_damaging(0.827) TCGA-F5-6814-01 1 19545795 19545795 C A EMC1 3'UTR 0.42 TCGA-F5-6814-01 1 196274447 196274447 C T KCNT2 Missense_Mutation p.E838K 0.44 deleterious(0.01) possibly_damaging(0.704) TCGA-F5-6814-01 1 196295863 196295863 G T KCNT2 Missense_Mutation p.L754M 0.23 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 196309577 196309577 C A KCNT2 Missense_Mutation p.E559D 0.29 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 1 196342303 196342303 A C KCNT2 Missense_Mutation p.L457R 0.24 deleterious(0.01) benign(0.425) TCGA-F5-6814-01 1 196642190 196642190 G T CFH Missense_Mutation p.Q47H 0.22 deleterious(0.01) possibly_damaging(0.747) TCGA-F5-6814-01 1 196697619 196697619 A C CFH Missense_Mutation p.N794H 0.14 deleterious(0.02) possibly_damaging(0.497) TCGA-F5-6814-01 1 196705999 196705999 C A CFH Missense_Mutation p.S820Y 0.44 deleterious(0) probably_damaging(0.914) TCGA-F5-6814-01 1 196715101 196715101 A G CFH Silent p.G1155G 0.19 TCGA-F5-6814-01 1 196758919 196758919 G T CFHR3 Intron 0.19 TCGA-F5-6814-01 1 196801182 196801182 C A CFHR1 3'UTR 0.11 TCGA-F5-6814-01 1 196874422 196874422 T G CFHR4 Splice_Site p.X146_splice 0.22 TCGA-F5-6814-01 1 196876449 196876449 C A CFHR4 Missense_Mutation p.S206Y 0.33 deleterious(0.02) probably_damaging(0.968) TCGA-F5-6814-01 1 196884087 196884087 T G CFHR4 Missense_Mutation p.N452K 0.10 tolerated(0.25) benign(0.403) TCGA-F5-6814-01 1 196918742 196918742 C T CFHR2 Silent p.C72C 0.16 TCGA-F5-6814-01 1 196918769 196918769 A G CFHR2 Silent p.P81P 0.09 TCGA-F5-6814-01 1 196963375 196963375 C A CFHR5 Missense_Mutation p.P199Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 196977823 196977823 A C CFHR5 3'UTR 0.09 TCGA-F5-6814-01 1 197057501 197057501 A C ASPM Missense_Mutation p.L3349R 0.24 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 197060162 197060162 G A ASPM Nonsense_Mutation p.R3152* 0.42 TCGA-F5-6814-01 1 197147571 197147571 C A ZBTB41 Missense_Mutation p.S583I 0.11 deleterious(0.03) probably_damaging(0.928) TCGA-F5-6814-01 1 197159939 197159939 C A ZBTB41 Nonsense_Mutation p.E451* 0.29 TCGA-F5-6814-01 1 197169116 197169116 T G ZBTB41 Missense_Mutation p.K163T 0.33 deleterious_low_confidence(0.04) probably_damaging(0.951) TCGA-F5-6814-01 1 197297645 197297645 C A CRB1 Missense_Mutation p.S55Y 0.38 tolerated(1) benign(0.052) TCGA-F5-6814-01 1 197398607 197398607 G T CRB1 Missense_Mutation p.C902F 0.28 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 1 197403931 197403931 T G CRB1 Missense_Mutation p.F980V 0.13 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 1 197407701 197407701 C T CRB1 Silent p.V1258V 0.38 TCGA-F5-6814-01 1 197411432 197411432 C T CRB1 Intron 0.10 TCGA-F5-6814-01 1 197581063 197581063 C A DENND1B Nonsense_Mutation p.E273* 0.10 TCGA-F5-6814-01 1 198247182 198247182 G A NEK7 Missense_Mutation p.R155Q 0.33 tolerated(0.06) benign(0.149) TCGA-F5-6814-01 1 198678922 198678922 C T PTPRC Silent p.N380N 0.31 TCGA-F5-6814-01 1 198723425 198723425 T G PTPRC Missense_Mutation p.F1179L 0.42 deleterious(0) possibly_damaging(0.739) TCGA-F5-6814-01 1 198723532 198723532 T G PTPRC Missense_Mutation p.F1215C 0.12 deleterious(0) probably_damaging(0.976) TCGA-F5-6814-01 1 200080384 200080384 G A NR5A2 Missense_Mutation p.D389N 0.40 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 1 200376275 200376275 A C ZNF281 Silent p.S853S 0.44 TCGA-F5-6814-01 1 200377908 200377908 T A ZNF281 Missense_Mutation p.K309I 0.26 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 1 200378051 200378051 A C ZNF281 Missense_Mutation p.H261Q 0.34 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 1 200534228 200534228 T G KIF14 Missense_Mutation p.K1347T 0.23 tolerated(0.12) benign(0.089) TCGA-F5-6814-01 1 200578009 200578009 T G KIF14 Missense_Mutation p.K501N 0.08 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 1 200586899 200586899 T G KIF14 Missense_Mutation p.K318T 0.41 tolerated(0.23) benign(0.013) TCGA-F5-6814-01 1 200610292 200610292 C A DDX59 3'Flank 0.23 TCGA-F5-6814-01 1 200610335 200610335 G T DDX59 3'Flank 0.08 TCGA-F5-6814-01 1 20082194 20082194 C T TMCO4 Missense_Mutation p.E150K 0.39 tolerated(0.11) benign(0.024) TCGA-F5-6814-01 1 201041902 201041902 G A CACNA1S Silent p.Y736Y 0.40 TCGA-F5-6814-01 1 201079390 201079390 C T CACNA1S Missense_Mutation p.E54K 0.34 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 1 201079391 201079391 G A CACNA1S Silent p.F53F 0.23 TCGA-F5-6814-01 1 201253006 201253006 C T PKP1 Missense_Mutation p.S59L 0.27 tolerated(0.07) benign(0.221) TCGA-F5-6814-01 1 201358376 201358376 G A LAD1 Missense_Mutation p.R32W 0.30 tolerated(0.09) probably_damaging(0.997) TCGA-F5-6814-01 1 201398346 201398346 C T RP11-134G8.2 RNA 0.35 TCGA-F5-6814-01 1 201454483 201454483 G A CSRP1 Nonsense_Mutation p.R145* 0.58 TCGA-F5-6814-01 1 201459417 201459417 A C CSRP1 Missense_Mutation p.I56M 0.41 deleterious(0.02) probably_damaging(0.964) TCGA-F5-6814-01 1 201789001 201789001 T G NAV1 Missense_Mutation p.Y1859D 0.44 deleterious(0) probably_damaging(0.958) TCGA-F5-6814-01 1 201868575 201868575 C A LMOD1 Missense_Mutation p.K522N 0.34 possibly_damaging(0.894) TCGA-F5-6814-01 1 202129897 202129897 T G PTPN7 Silent p.G13G 0.44 TCGA-F5-6814-01 1 20217002 20217002 G A OTUD3 Missense_Mutation p.D116N 0.39 deleterious(0.03) benign(0.309) TCGA-F5-6814-01 1 202398044 202398044 A G PPP1R12B Missense_Mutation p.K303R 0.12 deleterious(0) benign(0.173) TCGA-F5-6814-01 1 202573628 202573628 T G SYT2 Missense_Mutation p.K100N 0.41 tolerated(0.06) benign(0) TCGA-F5-6814-01 1 202727618 202727618 T G KDM5B Missense_Mutation p.E366D 0.14 deleterious(0.01) probably_damaging(0.909) TCGA-F5-6814-01 1 202731889 202731889 C A KDM5B Missense_Mutation p.D286Y 0.24 deleterious(0.01) benign(0.372) TCGA-F5-6814-01 1 202878143 202878143 C T KLHL12 Missense_Mutation p.R276H 0.31 deleterious(0) benign(0.019) TCGA-F5-6814-01 1 203012590 203012590 G T PPFIA4 Missense_Mutation p.E100D 0.24 deleterious(0) probably_damaging(0.953) TCGA-F5-6814-01 1 203054999 203054999 C T MYOG Missense_Mutation p.E31K 0.39 deleterious(0.04) probably_damaging(0.974) TCGA-F5-6814-01 1 203455833 203455833 G A PRELP Splice_Site p.X325_splice 0.41 TCGA-F5-6814-01 1 203467952 203467952 G T OPTC Missense_Mutation p.D172Y 0.14 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 203671198 203671198 C T ATP2B4 Missense_Mutation p.R310C 0.18 deleterious(0.02) benign(0.019) TCGA-F5-6814-01 1 203676208 203676208 C T ATP2B4 Missense_Mutation p.R391C 0.29 tolerated(0.09) possibly_damaging(0.761) TCGA-F5-6814-01 1 203676213 203676213 A G ATP2B4 Silent p.R392R 0.10 TCGA-F5-6814-01 1 203680140 203680140 C T ATP2B4 Silent p.F645F 0.28 TCGA-F5-6814-01 1 203708912 203708912 C T ATP2B4 Missense_Mutation p.A1183V 0.19 deleterious_low_confidence(0.03) benign(0.012) TCGA-F5-6814-01 1 203799300 203799300 G T ZC3H11A Missense_Mutation p.K223N 0.34 deleterious(0) probably_damaging(0.913) TCGA-F5-6814-01 1 203799316 203799316 T G ZC3H11A Missense_Mutation p.S229A 0.09 tolerated(0.23) benign(0.007) TCGA-F5-6814-01 1 203809450 203809450 T C ZC3H11A Silent p.S330S 0.10 TCGA-F5-6814-01 1 204170773 204170773 A G GOLT1A Missense_Mutation p.F95S 0.47 deleterious(0) benign(0.244) TCGA-F5-6814-01 1 20417133 20417133 T C PLA2G5 Missense_Mutation p.L122P 0.28 tolerated(0.09) probably_damaging(0.94) TCGA-F5-6814-01 1 20417304 20417304 G A PLA2G5 3'UTR 0.82 TCGA-F5-6814-01 1 204379581 204379581 T G PPP1R15B Missense_Mutation p.N320T 0.21 deleterious(0) possibly_damaging(0.692) TCGA-F5-6814-01 1 204518260 204518260 A C MDM4 Missense_Mutation p.E308A 0.10 deleterious(0.01) possibly_damaging(0.685) TCGA-F5-6814-01 1 20519726 20519726 A T UBXN10 3'UTR 0.32 TCGA-F5-6814-01 1 205743972 205743972 G A RAB7L1 Missense_Mutation p.S38F 0.24 deleterious(0) benign(0.292) TCGA-F5-6814-01 1 205888014 205888014 G A SLC26A9 Missense_Mutation p.A737V 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-F5-6814-01 1 206224948 206224951 TTCA CTCAG AVPR1B Frame_Shift_Ins p.F170Lfs*56 0.31 TCGA-F5-6814-01 1 206225289 206225289 C A AVPR1B Silent p.T283T 0.32 TCGA-F5-6814-01 1 206653437 206653437 C T IKBKE Missense_Mutation p.R441W 0.23 deleterious(0) probably_damaging(0.972) TCGA-F5-6814-01 1 206760287 206760287 G T RASSF5 Nonsense_Mutation p.E412* 0.34 TCGA-F5-6814-01 1 20680740 20680740 A C VWA5B1 Missense_Mutation p.N1216T 0.09 deleterious(0) possibly_damaging(0.884) TCGA-F5-6814-01 1 20680850 20680850 T C VWA5B1 3'Flank 0.27 TCGA-F5-6814-01 1 206902749 206902749 G A MAPKAPK2 Missense_Mutation p.E165K 0.43 tolerated(0.17) benign(0.064) TCGA-F5-6814-01 1 206905481 206905481 G T MAPKAPK2 Intron 0.46 TCGA-F5-6814-01 1 207074951 207074951 C A IL24 Missense_Mutation p.T140N 0.22 deleterious(0.01) probably_damaging(0.933) TCGA-F5-6814-01 1 207076486 207076486 C A IL24 3'UTR 0.37 TCGA-F5-6814-01 1 207107908 207107908 T G PIGR Missense_Mutation p.D521A 0.39 deleterious(0.01) possibly_damaging(0.831) TCGA-F5-6814-01 1 207238451 207238451 G T PFKFB2 Missense_Mutation p.R193I 0.20 probably_damaging(1) TCGA-F5-6814-01 1 207241649 207241649 G T PFKFB2 Missense_Mutation p.D328Y 0.11 probably_damaging(1) TCGA-F5-6814-01 1 207245617 207245617 G A PFKFB2 Silent p.S473S 0.43 TCGA-F5-6814-01 1 207269918 207269918 A C C4BPB Missense_Mutation p.N154T 0.18 tolerated(0.09) benign(0.063) TCGA-F5-6814-01 1 207273164 207273164 G A C4BPB Missense_Mutation p.E217K 0.34 tolerated(1) benign(0.001) TCGA-F5-6814-01 1 207644164 207644164 A G CR2 Missense_Mutation p.I435M 0.45 tolerated(0.06) benign(0.382) TCGA-F5-6814-01 1 207874951 207874951 C A CR1L Missense_Mutation p.S439Y 0.14 deleterious(0.01) probably_damaging(0.963) TCGA-F5-6814-01 1 20829777 20829777 T G MUL1 Missense_Mutation p.E49A 0.08 tolerated(0.57) benign(0.034) TCGA-F5-6814-01 1 20931469 20931469 G T CDA Missense_Mutation p.R68L 0.41 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 209803265 209803265 C T LAMB3 Missense_Mutation p.D317N 0.32 tolerated(0.78) benign(0.011) TCGA-F5-6814-01 1 210012357 210012357 A C DIEXF Missense_Mutation p.K389T 0.11 deleterious(0) possibly_damaging(0.868) TCGA-F5-6814-01 1 210012360 210012360 A G DIEXF Missense_Mutation p.K390R 0.12 deleterious(0.04) benign(0.071) TCGA-F5-6814-01 1 210016897 210016897 G A DIEXF Missense_Mutation p.R628Q 0.49 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 210267870 210267870 G T SYT14 Nonsense_Mutation p.E261* 0.28 TCGA-F5-6814-01 1 210334281 210334281 C A SYT14 Missense_Mutation p.S585Y 0.25 deleterious(0) possibly_damaging(0.46) TCGA-F5-6814-01 1 21050728 21050728 G A SH2D5 Missense_Mutation p.S216L 0.15 tolerated(0.22) benign(0.001) TCGA-F5-6814-01 1 21133857 21133857 G T EIF4G3 Missense_Mutation p.F1577L 0.16 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 211836604 211836604 A C NEK2 3'UTR 0.50 TCGA-F5-6814-01 1 211924401 211924401 G A LPGAT1 Missense_Mutation p.P288L 0.21 deleterious(0.02) possibly_damaging(0.821) TCGA-F5-6814-01 1 212002467 212002467 C T LPGAT1 Missense_Mutation p.E58K 0.36 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 212193518 212193518 C A INTS7 Missense_Mutation p.R106I 0.43 deleterious(0) possibly_damaging(0.84) TCGA-F5-6814-01 1 21220089 21220089 C T EIF4G3 Missense_Mutation p.R675Q 0.48 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6814-01 1 212274086 212274086 A G DTL Missense_Mutation p.H585R 0.28 tolerated(0.74) benign(0.001) TCGA-F5-6814-01 1 212506859 212506859 T C PPP2R5A Silent p.R133R 0.35 TCGA-F5-6814-01 1 212534245 212534245 A T PPP2R5A 3'UTR 0.24 TCGA-F5-6814-01 1 212791512 212791512 G T ATF3 Missense_Mutation p.R95I 0.41 deleterious(0) probably_damaging(0.945) TCGA-F5-6814-01 1 212798541 212798541 A C FAM71A Missense_Mutation p.K108Q 0.29 deleterious(0.01) possibly_damaging(0.64) TCGA-F5-6814-01 1 212798997 212798997 C T FAM71A Missense_Mutation p.P260S 0.23 tolerated(0.28) benign(0.013) TCGA-F5-6814-01 1 212911878 212911878 C A NSL1 Nonsense_Mutation p.E240* 0.33 TCGA-F5-6814-01 1 21299511 21299511 T G EIF4G3 Missense_Mutation p.K143T 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-F5-6814-01 1 213032349 213032349 C T FLVCR1 Silent p.C185C 0.30 TCGA-F5-6814-01 1 213145982 213145982 C A VASH2 Missense_Mutation p.F142L 0.34 tolerated(0.07) probably_damaging(0.911) TCGA-F5-6814-01 1 213244358 213244358 G A RPS6KC1 Missense_Mutation p.R39Q 0.07 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 213302884 213302884 A G RPS6KC1 Missense_Mutation p.S163G 0.29 deleterious(0.04) probably_damaging(0.97) TCGA-F5-6814-01 1 214170398 214170398 C T PROX1 Missense_Mutation p.R174W 0.44 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 214531327 214531327 C T PTPN14 Missense_Mutation p.A1168T 0.15 tolerated(0.12) benign(0.002) TCGA-F5-6814-01 1 214537983 214537983 T C PTPN14 Missense_Mutation p.T1103A 0.29 tolerated(0.31) benign(0.097) TCGA-F5-6814-01 1 214787067 214787067 A G CENPF 5'UTR 0.19 TCGA-F5-6814-01 1 214788324 214788324 G A CENPF Silent p.L104L 0.45 TCGA-F5-6814-01 1 214794274 214794274 A C CENPF Missense_Mutation p.K284Q 0.41 probably_damaging(0.997) TCGA-F5-6814-01 1 214814828 214814828 G T CENPF Missense_Mutation p.K1049N 0.39 possibly_damaging(0.59) TCGA-F5-6814-01 1 214816034 214816034 G A CENPF Silent p.T1451T 0.38 TCGA-F5-6814-01 1 214820663 214820663 G T CENPF Nonsense_Mutation p.E2584* 0.10 TCGA-F5-6814-01 1 214822113 214822113 G T CENPF Missense_Mutation p.E2642D 0.09 probably_damaging(0.99) TCGA-F5-6814-01 1 215259996 215259996 C T KCNK2 Missense_Mutation p.S111L 0.17 tolerated(0.29) benign(0.022) TCGA-F5-6814-01 1 215408222 215408222 G A KCNK2 Missense_Mutation p.E339K 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-F5-6814-01 1 215848489 215848489 A G USH2A Missense_Mutation p.V4255A 0.23 benign(0.001) TCGA-F5-6814-01 1 215914785 215914785 A G USH2A Silent p.A3881A 0.16 TCGA-F5-6814-01 1 215955433 215955433 G T USH2A Nonsense_Mutation p.S3564* 0.39 TCGA-F5-6814-01 1 215960118 215960118 C T USH2A Silent p.V3427V 0.20 TCGA-F5-6814-01 1 215990514 215990514 G T USH2A Missense_Mutation p.S3132Y 0.28 benign(0.299) TCGA-F5-6814-01 1 216074142 216074142 T C USH2A Missense_Mutation p.Y2469C 0.11 probably_damaging(1) TCGA-F5-6814-01 1 216166396 216166396 A C USH2A Missense_Mutation p.F2257L 0.19 benign(0.012) TCGA-F5-6814-01 1 216246638 216246638 G A USH2A Silent p.F1859F 0.38 TCGA-F5-6814-01 1 216251531 216251531 C T USH2A Silent p.S1824S 0.22 TCGA-F5-6814-01 1 216348539 216348539 G T USH2A Intron 0.30 TCGA-F5-6814-01 1 216373317 216373317 T G USH2A Missense_Mutation p.S1155R 0.23 benign(0.392) TCGA-F5-6814-01 1 216692702 216692702 A G ESRRG Silent p.I320I 0.35 TCGA-F5-6814-01 1 217822300 217822300 C T SPATA17 Missense_Mutation p.R49W 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 21808156 21808156 T G NBPF3 Nonsense_Mutation p.Y500* 0.20 TCGA-F5-6814-01 1 218614609 218614609 G T TGFB2 Missense_Mutation p.D412Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 21938249 21938249 C A RAP1GAP Nonsense_Mutation p.E289* 0.07 TCGA-F5-6814-01 1 220089150 220089150 G A SLC30A10 Nonsense_Mutation p.R367* 0.30 TCGA-F5-6814-01 1 220100486 220100486 C A SLC30A10 Intron 0.43 TCGA-F5-6814-01 1 220170428 220170428 G T EPRS Missense_Mutation p.S813Y 0.34 deleterious(0.04) benign(0.281) TCGA-F5-6814-01 1 220170467 220170467 T G EPRS Missense_Mutation p.K800T 0.34 deleterious(0.03) benign(0.363) TCGA-F5-6814-01 1 220291243 220291243 A C IARS2 Intron 0.09 TCGA-F5-6814-01 1 220330623 220330623 A C RAB3GAP2 Missense_Mutation p.F1182V 0.22 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 1 220363077 220363077 G T RAB3GAP2 Missense_Mutation p.L583I 0.40 tolerated(0.06) benign(0.067) TCGA-F5-6814-01 1 220387290 220387290 T G RAB3GAP2 Missense_Mutation p.K71T 0.09 tolerated(0.23) benign(0.008) TCGA-F5-6814-01 1 220440050 220440050 G T RAB3GAP2 Intron 0.18 TCGA-F5-6814-01 1 220771679 220771679 C T MARK1 Nonsense_Mutation p.R106* 0.33 TCGA-F5-6814-01 1 22079039 22079039 C T USP48 Missense_Mutation p.E216K 0.09 tolerated(0.32) benign(0.034) TCGA-F5-6814-01 1 220809308 220809308 C T MARK1 Silent p.S470S 0.37 TCGA-F5-6814-01 1 220826685 220826685 T C MARK1 Missense_Mutation p.F660S 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-F5-6814-01 1 220835216 220835216 C A MARK1 Missense_Mutation p.S699Y 0.09 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 1 220978599 220978599 G A MARC1 Silent p.P290P 0.33 TCGA-F5-6814-01 1 221055587 221055587 A G HLX Missense_Mutation p.N285S 0.10 tolerated(0.06) benign(0.211) TCGA-F5-6814-01 1 221058046 221058046 G A HLX Silent p.%3D 0.27 TCGA-F5-6814-01 1 22203118 22203118 C A HSPG2 Nonsense_Mutation p.E905* 0.50 TCGA-F5-6814-01 1 222743959 222743959 T G TAF1A Missense_Mutation p.H218P 0.08 tolerated(0.12) possibly_damaging(0.576) TCGA-F5-6814-01 1 222802999 222802999 G T MIA3 Nonsense_Mutation p.E813* 0.27 TCGA-F5-6814-01 1 222803356 222803356 G T MIA3 Nonsense_Mutation p.E932* 0.32 TCGA-F5-6814-01 1 222832856 222832856 G A MIA3 Splice_Site p.X1590_splice 0.37 TCGA-F5-6814-01 1 222920365 222920365 T G FAM177B Silent p.L61L 0.30 TCGA-F5-6814-01 1 22310710 22310710 G A CELA3B Silent p.Q176Q 0.16 TCGA-F5-6814-01 1 223176396 223176396 G A DISP1 Missense_Mutation p.E553K 0.49 tolerated(0.09) benign(0.174) TCGA-F5-6814-01 1 223177396 223177396 T G DISP1 Missense_Mutation p.F886C 0.12 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 223177867 223177867 C T DISP1 Missense_Mutation p.S1043L 0.25 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 1 223178495 223178495 A G DISP1 Silent p.L1252L 0.18 TCGA-F5-6814-01 1 223284267 223284267 C A TLR5 Missense_Mutation p.D703Y 0.15 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 1 223285267 223285267 C A TLR5 Missense_Mutation p.K369N 0.33 tolerated(0.28) benign(0.001) TCGA-F5-6814-01 1 223285804 223285804 G A TLR5 Silent p.L190L 0.38 TCGA-F5-6814-01 1 223285990 223285990 G T TLR5 Missense_Mutation p.F128L 0.18 tolerated(0.59) benign(0.039) TCGA-F5-6814-01 1 223568328 223568328 G T C1orf65 Missense_Mutation p.R504I 0.15 deleterious(0.01) possibly_damaging(0.748) TCGA-F5-6814-01 1 223947122 223947122 G A CAPN2 Missense_Mutation p.E490K 0.41 deleterious(0.03) probably_damaging(0.921) TCGA-F5-6814-01 1 223949290 223949290 G A CAPN2 Missense_Mutation p.D513N 0.36 deleterious(0.01) benign(0.227) TCGA-F5-6814-01 1 22405051 22405051 A C CDC42 Missense_Mutation p.K27T 0.08 tolerated(0.11) benign(0.037) TCGA-F5-6814-01 1 22417991 22417991 G A CDC42 Missense_Mutation p.R186H 0.31 tolerated(0.15) benign(0.001) TCGA-F5-6814-01 1 224345212 224345212 G A FBXO28 Missense_Mutation p.E291K 0.44 tolerated(0.12) probably_damaging(0.985) TCGA-F5-6814-01 1 225147999 225147999 G T DNAH14 Missense_Mutation p.R121I 0.37 deleterious(0.02) benign(0.411) TCGA-F5-6814-01 1 225155500 225155500 A C DNAH14 Intron 0.10 TCGA-F5-6814-01 1 225195128 225195128 G A DNAH14 Missense_Mutation p.R330Q 0.31 deleterious(0.03) probably_damaging(0.992) TCGA-F5-6814-01 1 225239489 225239489 T G DNAH14 Missense_Mutation p.L806V 0.08 probably_damaging(0.911) TCGA-F5-6814-01 1 225267028 225267028 C A DNAH14 Missense_Mutation p.F782L 0.40 tolerated(0.1) benign(0.003) TCGA-F5-6814-01 1 225445738 225445738 T G DNAH14 Missense_Mutation p.N2308K 0.21 benign(0.013) TCGA-F5-6814-01 1 225446843 225446843 A G DNAH14 Missense_Mutation p.T2343A 0.43 possibly_damaging(0.64) TCGA-F5-6814-01 1 225488650 225488650 C A DNAH14 Missense_Mutation p.S2104Y 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-F5-6814-01 1 225490966 225490966 T C DNAH14 Missense_Mutation p.W2168R 0.31 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 1 225533743 225533743 C T DNAH14 Silent p.I2690I 0.43 TCGA-F5-6814-01 1 225541576 225541576 C A DNAH14 Missense_Mutation p.Q3776K 0.30 possibly_damaging(0.878) TCGA-F5-6814-01 1 225548561 225548561 A C DNAH14 Silent p.S3892S 0.10 TCGA-F5-6814-01 1 225599097 225599097 C T LBR Missense_Mutation p.R377Q 0.34 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 1 225607064 225607064 C A LBR Missense_Mutation p.D181Y 0.44 tolerated(0.22) benign(0.002) TCGA-F5-6814-01 1 226175606 226175606 T C SDE2 Silent p.P375P 0.11 TCGA-F5-6814-01 1 226340195 226340195 G A ACBD3 Nonsense_Mutation p.R406* 0.48 TCGA-F5-6814-01 1 226346962 226346962 G T ACBD3 Missense_Mutation p.L276I 0.34 deleterious(0.03) probably_damaging(0.952) TCGA-F5-6814-01 1 226420152 226420152 G T LIN9 3'UTR 0.14 TCGA-F5-6814-01 1 226895610 226895610 G T ITPKB Intron 0.14 TCGA-F5-6814-01 1 227083163 227083163 G T PSEN2 Missense_Mutation p.K410N 0.19 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 1 227211015 227211015 G T CDC42BPA Missense_Mutation p.L1487I 0.25 tolerated(0.11) benign(0.037) TCGA-F5-6814-01 1 227842889 227842889 G T ZNF678 Missense_Mutation p.R313I 0.22 tolerated(0.29) benign(0.175) TCGA-F5-6814-01 1 227842926 227842926 A G ZNF678 Silent p.E325E 0.21 TCGA-F5-6814-01 1 227843477 227843477 G T ZNF678 Missense_Mutation p.R509I 0.40 tolerated(0.29) benign(0.001) TCGA-F5-6814-01 1 227920251 227920251 C T JMJD4 Missense_Mutation p.E412K 0.47 tolerated(0.54) benign(0.03) TCGA-F5-6814-01 1 227935653 227935653 G T SNAP47 Missense_Mutation p.E117D 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6814-01 1 228238512 228238512 G A WNT3A Missense_Mutation p.E157K 0.39 deleterious(0.01) possibly_damaging(0.884) TCGA-F5-6814-01 1 228285619 228285619 A G ARF1 Missense_Mutation p.R151G 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.865) TCGA-F5-6814-01 1 228333579 228333579 G A GUK1 Intron 0.35 TCGA-F5-6814-01 1 2283578 2283578 T C MORN1 Intron 0.44 TCGA-F5-6814-01 1 22838407 22838407 C A ZBTB40 Missense_Mutation p.F747L 0.45 deleterious(0) benign(0.153) TCGA-F5-6814-01 1 228401922 228401922 G A OBSCN Missense_Mutation p.D436N 0.12 probably_damaging(0.999) TCGA-F5-6814-01 1 228433269 228433269 C T OBSCN Missense_Mutation p.R1305C 0.37 benign(0.005) TCGA-F5-6814-01 1 228433294 228433294 G A OBSCN Missense_Mutation p.R1313Q 0.38 probably_damaging(0.954) TCGA-F5-6814-01 1 228433307 228433307 G A OBSCN Silent p.V1317V 0.35 TCGA-F5-6814-01 1 228434376 228434376 C T OBSCN Missense_Mutation p.S1394L 0.09 possibly_damaging(0.503) TCGA-F5-6814-01 1 228452027 228452027 C T OBSCN Missense_Mutation p.A1783V 0.19 benign(0.032) TCGA-F5-6814-01 1 228487588 228487588 C T OBSCN Missense_Mutation p.P4494S 0.25 probably_damaging(0.996) TCGA-F5-6814-01 1 228494285 228494285 G A OBSCN Missense_Mutation p.E4915K 0.37 probably_damaging(0.956) TCGA-F5-6814-01 1 228556579 228556579 G A OBSCN Missense_Mutation p.E7599K 0.21 benign(0.024) TCGA-F5-6814-01 1 228560737 228560737 G A OBSCN Missense_Mutation p.A8377T 0.63 possibly_damaging(0.652) TCGA-F5-6814-01 1 228584452 228584452 G T TRIM11 Intron 0.14 TCGA-F5-6814-01 1 22921772 22921772 C A EPHA8 Silent p.I551I 0.27 TCGA-F5-6814-01 1 229577678 229577678 A C NUP133 Nonsense_Mutation p.Y1148* 0.26 TCGA-F5-6814-01 1 229771507 229771507 G A URB2 Missense_Mutation p.E383K 0.61 tolerated(1) benign(0.002) TCGA-F5-6814-01 1 229773798 229773798 G A URB2 Silent p.T1146T 0.14 TCGA-F5-6814-01 1 230386249 230386249 T G GALNT2 Missense_Mutation p.F318V 0.25 deleterious(0.02) possibly_damaging(0.635) TCGA-F5-6814-01 1 230398367 230398367 C A GALNT2 Missense_Mutation p.F395L 0.37 tolerated(0.07) benign(0.003) TCGA-F5-6814-01 1 230804462 230804462 G T COG2 Nonsense_Mutation p.E176* 0.22 TCGA-F5-6814-01 1 231334832 231334832 T G TRIM67 Missense_Mutation p.C394G 0.38 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 1 231374900 231374900 G T C1orf131 Silent p.I51I 0.32 TCGA-F5-6814-01 1 231413315 231413315 C T GNPAT 3'UTR 0.10 TCGA-F5-6814-01 1 231487247 231487247 G T SPRTN Missense_Mutation p.E216D 0.48 tolerated(0.11) benign(0.442) TCGA-F5-6814-01 1 231487287 231487287 A C SPRTN Missense_Mutation p.K230Q 0.11 tolerated(0.12) benign(0.003) TCGA-F5-6814-01 1 231700424 231700424 G T TSNAX Nonsense_Mutation p.E216* 0.32 TCGA-F5-6814-01 1 231700678 231700678 C A TSNAX 3'UTR 0.29 TCGA-F5-6814-01 1 231885712 231885712 G T DISC1 Missense_Mutation p.E386D 0.29 deleterious(0.01) probably_damaging(0.949) TCGA-F5-6814-01 1 232002289 232002289 G A DISC1 Missense_Mutation p.E668K 0.33 tolerated_low_confidence(0.84) benign(0.01) TCGA-F5-6814-01 1 232581403 232581403 C T SIPA1L2 Silent p.Q1075Q 0.12 TCGA-F5-6814-01 1 232619657 232619657 T C SIPA1L2 Missense_Mutation p.E621G 0.39 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 232942353 232942353 A C MAP10 Missense_Mutation p.Q528H 0.16 deleterious(0.04) probably_damaging(0.974) TCGA-F5-6814-01 1 232942358 232942358 G A MAP10 Missense_Mutation p.R530Q 0.32 tolerated(0.25) possibly_damaging(0.787) TCGA-F5-6814-01 1 232943932 232943932 A C MAP10 3'UTR 0.35 TCGA-F5-6814-01 1 233121979 233121979 G A PCNXL2 Silent p.F2033F 0.37 TCGA-F5-6814-01 1 233394485 233394485 T G PCNXL2 Missense_Mutation p.K375Q 0.48 deleterious_low_confidence(0) benign(0.07) TCGA-F5-6814-01 1 233490680 233490680 G T MLK4 Nonsense_Mutation p.E412* 0.48 TCGA-F5-6814-01 1 233807252 233807252 C T KCNK1 Silent p.C329C 0.19 TCGA-F5-6814-01 1 23405541 23405541 C T KDM1A Silent p.C642C 0.48 TCGA-F5-6814-01 1 234536996 234536996 C A TARBP1 Missense_Mutation p.K1334N 0.42 deleterious(0) possibly_damaging(0.859) TCGA-F5-6814-01 1 235506527 235506527 A G GGPS1 3'UTR 0.16 TCGA-F5-6814-01 1 235507522 235507522 T C GGPS1 3'UTR 0.10 TCGA-F5-6814-01 1 235907320 235907320 C A LYST Nonsense_Mutation p.E2704* 0.38 TCGA-F5-6814-01 1 235940455 235940455 G T LYST Missense_Mutation p.L1790I 0.22 tolerated(0.12) benign(0.002) TCGA-F5-6814-01 1 235944209 235944209 C A LYST Nonsense_Mutation p.E1724* 0.26 TCGA-F5-6814-01 1 235955338 235955338 C T LYST Missense_Mutation p.A1402T 0.18 tolerated(0.92) benign(0) TCGA-F5-6814-01 1 235969720 235969720 A C LYST Missense_Mutation p.F906V 0.09 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-F5-6814-01 1 235969998 235969998 C T LYST Missense_Mutation p.R813Q 0.19 deleterious(0) possibly_damaging(0.895) TCGA-F5-6814-01 1 235973320 235973320 T G LYST Missense_Mutation p.E266D 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-F5-6814-01 1 236175319 236175319 C T NID1 Missense_Mutation p.R810Q 0.59 tolerated(0.28) benign(0.076) TCGA-F5-6814-01 1 236368476 236368476 C A GPR137B Missense_Mutation p.F339L 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 1 236557764 236557764 A C EDARADD Missense_Mutation p.K7T 0.26 tolerated_low_confidence(0.13) benign(0.179) TCGA-F5-6814-01 1 236732394 236732394 A C HEATR1 Missense_Mutation p.F1327V 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 236734928 236734928 G T HEATR1 Missense_Mutation p.L1256I 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 236767396 236767396 C T HEATR1 5'UTR 0.23 TCGA-F5-6814-01 1 23696788 23696788 T G C1orf213 3'UTR 0.09 TCGA-F5-6814-01 1 23698253 23698253 A C C1orf213 3'UTR 0.50 TCGA-F5-6814-01 1 23707799 23707799 G A TCEA3 3'UTR 0.32 TCGA-F5-6814-01 1 237580411 237580411 C T RYR2 Missense_Mutation p.T279M 0.19 probably_damaging(0.921) TCGA-F5-6814-01 1 237670085 237670085 A C RYR2 Missense_Mutation p.K897Q 0.14 probably_damaging(0.935) TCGA-F5-6814-01 1 237777748 237777748 G T RYR2 Nonsense_Mutation p.E1774* 0.40 TCGA-F5-6814-01 1 237801775 237801775 T G RYR2 Missense_Mutation p.F2304C 0.26 probably_damaging(1) TCGA-F5-6814-01 1 237824178 237824178 T G RYR2 Missense_Mutation p.I2789M 0.28 possibly_damaging(0.646) TCGA-F5-6814-01 1 237841347 237841347 G T RYR2 Splice_Site p.X2944_splice 0.41 TCGA-F5-6814-01 1 237841392 237841392 G T RYR2 Nonsense_Mutation p.E2959* 0.31 TCGA-F5-6814-01 1 237897046 237897046 T G RYR2 Missense_Mutation p.I3694S 0.29 benign(0.434) TCGA-F5-6814-01 1 237947416 237947416 G A RYR2 Missense_Mutation p.R4135H 0.44 probably_damaging(0.993) TCGA-F5-6814-01 1 237961382 237961382 G T RYR2 Nonsense_Mutation p.E4668* 0.32 TCGA-F5-6814-01 1 237961430 237961430 G T RYR2 Nonsense_Mutation p.E4684* 0.34 TCGA-F5-6814-01 1 237969506 237969506 G A RYR2 Missense_Mutation p.A4741T 0.38 probably_damaging(0.948) TCGA-F5-6814-01 1 238053923 238053923 G A ZP4 Missense_Mutation p.R5W 0.44 tolerated(0.19) benign(0.12) TCGA-F5-6814-01 1 23965612 23965612 A G MDS2 Missense_Mutation p.D6G 0.07 tolerated_low_confidence(0.75) possibly_damaging(0.737) TCGA-F5-6814-01 1 240492391 240492391 G A FMN2 Missense_Mutation p.E1411K 0.42 probably_damaging(0.999) TCGA-F5-6814-01 1 240497239 240497239 T G FMN2 Missense_Mutation p.F1546C 0.21 possibly_damaging(0.8) TCGA-F5-6814-01 1 240555816 240555816 A C FMN2 Missense_Mutation p.I1622L 0.11 benign(0.246) TCGA-F5-6814-01 1 24080741 24080741 C T TCEB3 Silent p.I589I 0.25 TCGA-F5-6814-01 1 240990462 240990462 A G RGS7 Missense_Mutation p.V207A 0.09 deleterious(0) benign(0.013) TCGA-F5-6814-01 1 24106356 24106356 T G PITHD1 Missense_Mutation p.F82C 0.08 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 241146401 241146401 C A RGS7 Missense_Mutation p.K68N 0.09 deleterious(0.04) benign(0.262) TCGA-F5-6814-01 1 24134719 24134719 G T HMGCL Missense_Mutation p.S219Y 0.18 deleterious(0) possibly_damaging(0.838) TCGA-F5-6814-01 1 241725519 241725519 G T KMO Nonsense_Mutation p.G168* 0.10 TCGA-F5-6814-01 1 241725520 241725520 G T KMO Missense_Mutation p.G168V 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 24172561 24172561 T G FUCA1 Intron 0.09 TCGA-F5-6814-01 1 241756763 241756763 G T OPN3 3'UTR 0.41 TCGA-F5-6814-01 1 241797862 241797862 G A CHML Missense_Mutation p.R403C 0.13 deleterious(0) possibly_damaging(0.791) TCGA-F5-6814-01 1 241798151 241798151 C T CHML Silent p.E306E 0.35 TCGA-F5-6814-01 1 241850787 241850787 C T WDR64 Silent p.D278D 0.22 TCGA-F5-6814-01 1 241943340 241943340 C T WDR64 Silent p.F847F 0.33 TCGA-F5-6814-01 1 242016665 242016665 G A EXO1 Missense_Mutation p.R96Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 242030176 242030176 A G EXO1 Silent p.Q362Q 0.19 TCGA-F5-6814-01 1 242042172 242042172 G T EXO1 Nonsense_Mutation p.E546* 0.35 TCGA-F5-6814-01 1 242271037 242271037 G A PLD5 Missense_Mutation p.T392M 0.10 tolerated(0.72) probably_damaging(0.99) TCGA-F5-6814-01 1 242287771 242287771 G A PLD5 Missense_Mutation p.S311L 0.40 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 1 243291595 243291595 G T CEP170 Missense_Mutation p.S1474Y 0.08 deleterious(0) probably_damaging(0.929) TCGA-F5-6814-01 1 243349363 243349363 C T CEP170 Silent p.A428A 0.36 TCGA-F5-6814-01 1 243504408 243504408 T C SDCCAG8 Missense_Mutation p.I430T 0.08 tolerated(0.61) benign(0.012) TCGA-F5-6814-01 1 243663042 243663042 T G AKT3 3'Flank 0.44 TCGA-F5-6814-01 1 244217801 244217801 C T ZBTB18 Missense_Mutation p.S242L 0.47 tolerated(0.07) benign(0.177) TCGA-F5-6814-01 1 244220503 244220503 T G ZBTB18 3'UTR 0.09 TCGA-F5-6814-01 1 244220776 244220776 G T ZBTB18 3'UTR 0.39 TCGA-F5-6814-01 1 244552349 244552349 G T C1orf100 Missense_Mutation p.R141I 0.39 deleterious(0.04) benign(0.023) TCGA-F5-6814-01 1 244552383 244552383 G T C1orf100 3'UTR 0.30 TCGA-F5-6814-01 1 244572939 244572939 A C ADSS Silent p.V440V 0.08 TCGA-F5-6814-01 1 244747221 244747221 G T C1orf101 Missense_Mutation p.A689S 0.22 tolerated(0.16) benign(0.011) TCGA-F5-6814-01 1 244773599 244773599 C T C1orf101 Missense_Mutation p.L821F 0.11 deleterious(0.01) probably_damaging(0.951) TCGA-F5-6814-01 1 245250677 245250677 A C EFCAB2 3'UTR 0.11 TCGA-F5-6814-01 1 2452587 2452587 G A PANK4 Silent p.G125G 0.40 TCGA-F5-6814-01 1 245772575 245772575 C T KIF26B Silent p.S553S 0.11 TCGA-F5-6814-01 1 245849534 245849534 C A KIF26B Missense_Mutation p.S1083R 0.44 tolerated(0.06) unknown(0) TCGA-F5-6814-01 1 247013192 247013192 G A AHCTF1 Missense_Mutation p.S2048L 0.33 tolerated(0.24) benign(0.021) TCGA-F5-6814-01 1 247079561 247079561 G T AHCTF1 Missense_Mutation p.F95L 0.08 tolerated(0.08) possibly_damaging(0.755) TCGA-F5-6814-01 1 247151211 247151211 C T ZNF695 Silent p.Q202Q 0.13 TCGA-F5-6814-01 1 247264112 247264112 G T ZNF669 Missense_Mutation p.S320Y 0.42 tolerated(0.13) benign(0.012) TCGA-F5-6814-01 1 247492570 247492570 G A ZNF496 Missense_Mutation p.A104V 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 247492840 247492840 T G ZNF496 Missense_Mutation p.E14A 0.49 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 1 247587202 247587202 G T NLRP3 Missense_Mutation p.D153Y 0.44 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 1 247587948 247587948 G T NLRP3 Missense_Mutation p.E401D 0.56 tolerated(0.76) possibly_damaging(0.483) TCGA-F5-6814-01 1 247654924 247654924 G A OR2W5 RNA 0.19 TCGA-F5-6814-01 1 247655114 247655114 G T OR2W5 RNA 0.36 TCGA-F5-6814-01 1 247695163 247695163 G T OR2C3 Silent p.V217V 0.27 TCGA-F5-6814-01 1 247695788 247695788 G T OR2C3 Missense_Mutation p.S9Y 0.31 tolerated(0.16) benign(0.001) TCGA-F5-6814-01 1 247752016 247752016 G A OR2G2 Missense_Mutation p.A119T 0.26 tolerated(0.17) benign(0.045) TCGA-F5-6814-01 1 247875621 247875621 A G OR6F1 Missense_Mutation p.L146P 0.52 deleterious(0.01) probably_damaging(0.918) TCGA-F5-6814-01 1 247902700 247902700 T C OR14K1 Missense_Mutation p.S262P 0.35 tolerated(0.46) benign(0.101) TCGA-F5-6814-01 1 248028087 248028087 G A TRIM58 Silent p.R199R 0.23 TCGA-F5-6814-01 1 248224900 248224900 G T OR2L3 Missense_Mutation p.R306I 0.23 deleterious(0.04) benign(0.027) TCGA-F5-6814-01 1 248262683 248262683 G A OR2L13 Silent p.E2E 0.19 TCGA-F5-6814-01 1 248262779 248262779 C A OR2L13 Missense_Mutation p.F34L 0.14 deleterious(0.01) possibly_damaging(0.622) TCGA-F5-6814-01 1 248263527 248263527 C T OR2L13 Missense_Mutation p.L284F 0.48 deleterious(0.02) benign(0.242) TCGA-F5-6814-01 1 248343679 248343679 G T OR2M2 Missense_Mutation p.R131I 0.25 deleterious(0) benign(0.103) TCGA-F5-6814-01 1 248344240 248344240 T G OR2M2 Missense_Mutation p.L318R 0.36 tolerated_low_confidence(0.19) benign(0) TCGA-F5-6814-01 1 248436418 248436418 C A OR2T33 Missense_Mutation p.K233N 0.17 deleterious(0.04) probably_damaging(0.93) TCGA-F5-6814-01 1 248436537 248436537 C T OR2T33 Missense_Mutation p.E194K 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-F5-6814-01 1 248458365 248458365 G A OR2T12 Silent p.I172I 0.33 TCGA-F5-6814-01 1 248487290 248487290 A G OR2M7 Missense_Mutation p.I194T 0.14 tolerated(0.42) benign(0.002) TCGA-F5-6814-01 1 248512185 248512185 C A OR14C36 Missense_Mutation p.L37I 0.28 tolerated(0.06) benign(0.226) TCGA-F5-6814-01 1 248570078 248570078 C A OR2T1 Missense_Mutation p.F261L 0.35 tolerated(0.25) probably_damaging(0.946) TCGA-F5-6814-01 1 248616180 248616180 C A OR2T2 Missense_Mutation p.L28I 0.18 tolerated(0.14) benign(0) TCGA-F5-6814-01 1 249119131 249119131 C A SH3BP5L Missense_Mutation p.A2S 0.25 tolerated_low_confidence(0.15) benign(0.036) TCGA-F5-6814-01 1 249143423 249143423 G A ZNF672 3'UTR 0.37 TCGA-F5-6814-01 1 24977914 24977914 C A SRRM1 Missense_Mutation p.S179Y 0.25 unknown(0) TCGA-F5-6814-01 1 24981402 24981402 G A SRRM1 Missense_Mutation p.R366H 0.23 unknown(0) TCGA-F5-6814-01 1 24995976 24995976 G A SRRM1 Missense_Mutation p.R701Q 0.21 unknown(0) TCGA-F5-6814-01 1 2520427 2520427 T C FAM213B Missense_Mutation p.I206T 0.20 deleterious(0) possibly_damaging(0.844) TCGA-F5-6814-01 1 25573007 25573007 C A C1orf63 Nonsense_Mutation p.E150* 0.14 TCGA-F5-6814-01 1 25683289 25683289 G T TMEM50A Missense_Mutation p.D125Y 0.22 deleterious(0.05) benign(0.217) TCGA-F5-6814-01 1 25718594 25718594 G A RHCE Silent p.F175F 0.38 TCGA-F5-6814-01 1 25785230 25785230 G A TMEM57 Missense_Mutation p.R334Q 0.35 tolerated(0.55) benign(0.013) TCGA-F5-6814-01 1 25785241 25785241 G A TMEM57 Missense_Mutation p.A338T 0.27 tolerated(0.58) benign(0.003) TCGA-F5-6814-01 1 25812221 25812221 G T TMEM57 Missense_Mutation p.E477D 0.34 deleterious(0.02) probably_damaging(0.978) TCGA-F5-6814-01 1 26013026 26013026 C T MAN1C1 Silent p.F212F 0.23 TCGA-F5-6814-01 1 26496966 26496966 G T ZNF593 Missense_Mutation p.K86N 0.17 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 1 26507226 26507226 G T CNKSR1 Missense_Mutation p.E77D 0.31 tolerated(0.07) benign(0.129) TCGA-F5-6814-01 1 26695033 26695033 A G ZNF683 Silent p.G10G 0.08 TCGA-F5-6814-01 1 26737300 26737300 G A LIN28A 5'UTR 0.54 TCGA-F5-6814-01 1 26759432 26759432 G T DHDDS 5'UTR 0.09 TCGA-F5-6814-01 1 26885383 26885383 C T RPS6KA1 Silent p.D399D 0.28 TCGA-F5-6814-01 1 26901006 26901006 C T RPS6KA1 3'Flank 0.38 TCGA-F5-6814-01 1 27106354 27106354 C T ARID1A Nonsense_Mutation p.R1989* 0.48 TCGA-F5-6814-01 1 27278746 27278746 G T C1orf172 Silent p.T42T 0.20 TCGA-F5-6814-01 1 27630226 27630226 T C WDTC1 Missense_Mutation p.F527S 0.12 tolerated(0.42) benign(0) TCGA-F5-6814-01 1 27630278 27630278 C A WDTC1 Missense_Mutation p.F544L 0.15 deleterious(0.01) benign(0.396) TCGA-F5-6814-01 1 27677345 27677345 G A SYTL1 Missense_Mutation p.E356K 0.36 deleterious(0.01) probably_damaging(0.993) TCGA-F5-6814-01 1 27680409 27680409 C A SYTL1 3'UTR 0.42 TCGA-F5-6814-01 1 28059135 28059135 G T FAM76A Missense_Mutation p.K90N 0.16 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 1 28087022 28087022 T C FAM76A Missense_Mutation p.L319P 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 28864526 28864526 C T RCC1 3'UTR 0.24 TCGA-F5-6814-01 1 28880172 28880172 G T TRNAU1AP Missense_Mutation p.E16D 0.45 deleterious(0.03) probably_damaging(0.914) TCGA-F5-6814-01 1 29040650 29040650 G A GMEB1 Missense_Mutation p.V363I 0.13 tolerated(0.27) benign(0.001) TCGA-F5-6814-01 1 29069517 29069517 G A YTHDF2 Silent p.K245K 0.22 TCGA-F5-6814-01 1 2939052 2939052 C T ACTRT2 Nonsense_Mutation p.Q268* 0.29 TCGA-F5-6814-01 1 2939155 2939155 C T ACTRT2 Missense_Mutation p.S302L 0.23 deleterious(0) possibly_damaging(0.804) TCGA-F5-6814-01 1 2939220 2939220 T A ACTRT2 Missense_Mutation p.S324T 0.18 deleterious(0.01) benign(0.049) TCGA-F5-6814-01 1 29475058 29475058 G A SRSF4 Missense_Mutation p.S450L 0.12 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 1 29522514 29522514 A C MECR Missense_Mutation p.I301M 0.33 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 1 29618425 29618425 A C PTPRU Missense_Mutation p.E798A 0.19 deleterious(0.01) benign(0.081) TCGA-F5-6814-01 1 31186444 31186444 C A MATN1 Missense_Mutation p.E492D 0.31 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 31406164 31406164 C T PUM1 Missense_Mutation p.R1154H 0.47 deleterious(0) probably_damaging(0.931) TCGA-F5-6814-01 1 31406171 31406171 T C PUM1 Missense_Mutation p.T1152A 0.23 tolerated(0.3) benign(0.007) TCGA-F5-6814-01 1 31414936 31414936 C T PUM1 Missense_Mutation p.R1010Q 0.38 deleterious(0) probably_damaging(0.936) TCGA-F5-6814-01 1 31426745 31426745 T C PUM1 Missense_Mutation p.S803G 0.11 tolerated(0.24) benign(0.106) TCGA-F5-6814-01 1 31440088 31440088 C A PUM1 Missense_Mutation p.R572I 0.37 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 1 32098207 32098207 C T PEF1 Missense_Mutation p.D172N 0.24 tolerated(0.17) possibly_damaging(0.718) TCGA-F5-6814-01 1 32768264 32768264 A C HDAC1 Missense_Mutation p.K31T 0.47 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 1 32794696 32794696 T G HDAC1 Missense_Mutation p.Y222D 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 32829634 32829634 G A TSSK3 Missense_Mutation p.S195N 0.40 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 1 33099564 33099564 C T ZBTB8OS Missense_Mutation p.V90I 0.16 tolerated(0.47) benign(0.21) TCGA-F5-6814-01 1 33147365 33147365 T C SYNC 3'UTR 0.39 TCGA-F5-6814-01 1 33233493 33233493 G A KIAA1522 Missense_Mutation p.R114Q 0.31 deleterious(0) unknown(0) TCGA-F5-6814-01 1 3329084 3329084 C A PRDM16 Missense_Mutation p.L775I 0.13 deleterious(0) probably_damaging(0.96) TCGA-F5-6814-01 1 33478872 33478872 G T AK2 Silent p.I210I 0.40 TCGA-F5-6814-01 1 33799730 33799730 G A PHC2 Silent p.I573I 0.19 TCGA-F5-6814-01 1 33834216 33834216 A G PHC2 Missense_Mutation p.F195S 0.59 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 1 33990483 33990483 A G CSMD2 Silent p.A3321A 0.53 TCGA-F5-6814-01 1 34052210 34052210 G A CSMD2 Silent p.I2317I 0.24 TCGA-F5-6814-01 1 34052214 34052214 T C CSMD2 Missense_Mutation p.D2316G 0.25 deleterious(0.01) benign(0.167) TCGA-F5-6814-01 1 3407522 3407522 A G MEGF6 Silent p.G1506G 0.20 TCGA-F5-6814-01 1 3425767 3425767 A G MEGF6 Missense_Mutation p.F467S 0.29 tolerated(0.14) benign(0.184) TCGA-F5-6814-01 1 34662874 34662874 A G C1orf94 Silent p.E123E 0.38 TCGA-F5-6814-01 1 35227334 35227334 G A GJB4 Missense_Mutation p.R160H 0.24 tolerated(0.17) benign(0.019) TCGA-F5-6814-01 1 35227920 35227920 T G GJB4 3'UTR 0.44 TCGA-F5-6814-01 1 35228212 35228212 C T GJB4 3'UTR 0.43 TCGA-F5-6814-01 1 35228670 35228670 C A GJB4 3'UTR 0.35 TCGA-F5-6814-01 1 35260514 35260514 C T GJA4 Missense_Mutation p.R234C 0.43 deleterious(0) benign(0.002) TCGA-F5-6814-01 1 35453799 35453799 T G ZMYM6 Missense_Mutation p.N962H 0.41 deleterious(0.01) probably_damaging(0.938) TCGA-F5-6814-01 1 35563034 35563034 C A ZMYM1 Missense_Mutation p.L96I 0.19 deleterious_low_confidence(0) possibly_damaging(0.582) TCGA-F5-6814-01 1 35576011 35576011 C A ZMYM1 Missense_Mutation p.F308L 0.26 tolerated_low_confidence(0.4) benign(0.406) TCGA-F5-6814-01 1 35579614 35579614 A C ZMYM1 Missense_Mutation p.K728T 0.12 tolerated(0.09) benign(0.088) TCGA-F5-6814-01 1 35656961 35656961 C T SFPQ Missense_Mutation p.G333E 0.38 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 35825027 35825027 G A ZMYM4 Missense_Mutation p.S196N 0.08 tolerated_low_confidence(0.16) benign(0.006) TCGA-F5-6814-01 1 35917232 35917232 C A KIAA0319L Nonsense_Mutation p.E687* 0.08 TCGA-F5-6814-01 1 36201964 36201964 A G CLSPN 3'Flank 0.44 TCGA-F5-6814-01 1 36202989 36202989 G T CLSPN Missense_Mutation p.S1233Y 0.19 deleterious(0.04) probably_damaging(0.935) TCGA-F5-6814-01 1 36230079 36230079 G T CLSPN Missense_Mutation p.L124I 0.39 tolerated(0.07) possibly_damaging(0.521) TCGA-F5-6814-01 1 36282548 36282548 C T AGO4 Nonsense_Mutation p.R29* 0.24 TCGA-F5-6814-01 1 36551632 36551632 G A TEKT2 Missense_Mutation p.E160K 0.34 tolerated(0.08) benign(0.27) TCGA-F5-6814-01 1 36557310 36557310 G A ADPRHL2 Missense_Mutation p.D134N 0.49 deleterious(0.01) possibly_damaging(0.823) TCGA-F5-6814-01 1 36557561 36557561 T C ADPRHL2 Silent p.N189N 0.14 TCGA-F5-6814-01 1 36603541 36603541 A C TRAPPC3 Missense_Mutation p.I93M 0.30 deleterious(0.02) possibly_damaging(0.596) TCGA-F5-6814-01 1 3662339 3662339 G A TP73-AS1 RNA 0.26 TCGA-F5-6814-01 1 3669196 3669196 A G CCDC27 Missense_Mutation p.S51G 0.13 tolerated(0.24) possibly_damaging(0.682) TCGA-F5-6814-01 1 36752746 36752746 T C THRAP3 Silent p.G305G 0.31 TCGA-F5-6814-01 1 36757015 36757015 G T THRAP3 Missense_Mutation p.D596Y 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6814-01 1 36762246 36762246 A G THRAP3 Silent p.K726K 0.36 TCGA-F5-6814-01 1 36786133 36786133 T G SH3D21 Silent p.A623A 0.10 TCGA-F5-6814-01 1 37291324 37291324 C T GRIK3 Missense_Mutation p.R545Q 0.47 deleterious(0.01) possibly_damaging(0.883) TCGA-F5-6814-01 1 37947341 37947341 T G ZC3H12A Silent p.V241V 0.15 TCGA-F5-6814-01 1 38261402 38261402 G A MANEAL Intron 0.48 TCGA-F5-6814-01 1 38328076 38328076 G A INPP5B Nonsense_Mutation p.R885* 0.43 TCGA-F5-6814-01 1 38409537 38409537 C T INPP5B Missense_Mutation p.A61T 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 1 38444453 38444453 A C SF3A3 Missense_Mutation p.S292A 0.19 tolerated(0.36) benign(0.015) TCGA-F5-6814-01 1 38483398 38483398 A T UTP11L Missense_Mutation p.N62Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 38488372 38488372 G T UTP11L Missense_Mutation p.R190L 0.21 deleterious(0.01) benign(0.008) TCGA-F5-6814-01 1 39377038 39377038 T G RHBDL2 Missense_Mutation p.K155T 0.14 tolerated(0.1) possibly_damaging(0.891) TCGA-F5-6814-01 1 39723636 39723636 A C MACF1 Missense_Mutation p.D160A 0.26 possibly_damaging(0.838) TCGA-F5-6814-01 1 39801495 39801495 C A MACF1 Intron 0.25 TCGA-F5-6814-01 1 39802124 39802124 G T MACF1 Intron 0.37 TCGA-F5-6814-01 1 39905154 39905154 A C MACF1 Missense_Mutation p.Q4084H 0.27 probably_damaging(0.999) TCGA-F5-6814-01 1 39918369 39918369 G A MACF1 Missense_Mutation p.R4817Q 0.14 probably_damaging(0.988) TCGA-F5-6814-01 1 39977529 39977529 A T BMP8A Missense_Mutation p.K209M 0.16 deleterious(0) possibly_damaging(0.796) TCGA-F5-6814-01 1 40026693 40026693 A C PABPC4 3'UTR 0.29 TCGA-F5-6814-01 1 40030160 40030160 C T PABPC4 Missense_Mutation p.R463H 0.33 tolerated(0.21) possibly_damaging(0.512) TCGA-F5-6814-01 1 40208923 40208923 C A PPIE Silent p.V79V 0.34 TCGA-F5-6814-01 1 40236107 40236107 T G OXCT2 Missense_Mutation p.K274T 0.23 tolerated(0.48) benign(0.036) TCGA-F5-6814-01 1 40363012 40363012 C T MYCL 3'UTR 0.38 TCGA-F5-6814-01 1 40701543 40701543 T G RLF Missense_Mutation p.M390R 0.10 deleterious(0.02) possibly_damaging(0.701) TCGA-F5-6814-01 1 40704677 40704677 G A RLF Missense_Mutation p.E1435K 0.21 tolerated(0.24) possibly_damaging(0.783) TCGA-F5-6814-01 1 40735679 40735679 G T ZMPSTE24 Missense_Mutation p.K169N 0.42 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 1 40981622 40981622 A C EXO5 3'UTR 0.10 TCGA-F5-6814-01 1 41449006 41449006 G A CTPS1 Missense_Mutation p.G15E 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 41457472 41457472 A G CTPS1 Silent p.S225S 0.10 TCGA-F5-6814-01 1 41461671 41461671 G A CTPS1 Missense_Mutation p.R268Q 0.12 tolerated(0.24) benign(0.001) TCGA-F5-6814-01 1 42048037 42048037 G A HIVEP3 Missense_Mutation p.S811F 0.20 benign(0.429) TCGA-F5-6814-01 1 42048680 42048680 A C HIVEP3 Missense_Mutation p.L597V 0.23 probably_damaging(0.996) TCGA-F5-6814-01 1 42050242 42050242 T G HIVEP3 Missense_Mutation p.Q76P 0.09 benign(0.002) TCGA-F5-6814-01 1 42744078 42744078 T A FOXJ3 Missense_Mutation p.I104F 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 42896452 42896452 T G ZMYND12 Missense_Mutation p.Q351H 0.13 tolerated(0.13) benign(0.429) TCGA-F5-6814-01 1 42905564 42905564 T G ZMYND12 Missense_Mutation p.K186T 0.08 deleterious(0.03) benign(0.231) TCGA-F5-6814-01 1 43032078 43032078 C T CCDC30 Nonsense_Mutation p.R263* 0.10 TCGA-F5-6814-01 1 43042833 43042833 A C CCDC30 Missense_Mutation p.K333T 0.34 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 1 43213426 43213426 A C LEPRE1 Missense_Mutation p.Y628D 0.21 deleterious(0) possibly_damaging(0.782) TCGA-F5-6814-01 1 43225052 43225052 G A LEPRE1 Nonsense_Mutation p.R210* 0.30 TCGA-F5-6814-01 1 43308394 43308394 C A ERMAP Missense_Mutation p.L307I 0.20 tolerated(0.13) probably_damaging(0.999) TCGA-F5-6814-01 1 43317790 43317790 G A ZNF691 3'Flank 0.08 TCGA-F5-6814-01 1 43675577 43675577 C A WDR65 Missense_Mutation p.P640H 0.26 deleterious(0) possibly_damaging(0.881) TCGA-F5-6814-01 1 43738870 43738870 G A TMEM125 Silent p.S159S 0.11 TCGA-F5-6814-01 1 43739401 43739401 T G TMEM125 3'UTR 0.33 TCGA-F5-6814-01 1 43788360 43788360 C T TIE1 Silent p.Y1128Y 0.43 TCGA-F5-6814-01 1 43804964 43804964 C A MPL Silent p.I138I 0.34 TCGA-F5-6814-01 1 43828872 43828872 A T CDC20 3'UTR 0.26 TCGA-F5-6814-01 1 43917358 43917358 T C HYI Missense_Mutation p.N196D 0.12 tolerated(0.37) probably_damaging(1) TCGA-F5-6814-01 1 44084847 44084847 C T PTPRF Silent p.D1540D 0.55 TCGA-F5-6814-01 1 44201906 44201906 C A ST3GAL3 Intron 0.20 TCGA-F5-6814-01 1 44424422 44424422 A C IPO13 Missense_Mutation p.N630T 0.20 deleterious(0.03) benign(0.013) TCGA-F5-6814-01 1 44450574 44450574 A G B4GALT2 Missense_Mutation p.N225S 0.18 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 1 44450592 44450592 C T B4GALT2 Missense_Mutation p.A231V 0.28 deleterious(0.01) possibly_damaging(0.612) TCGA-F5-6814-01 1 44482839 44482839 G A SLC6A9 5'UTR 0.36 TCGA-F5-6814-01 1 44596234 44596234 C T KLF17 Missense_Mutation p.R326C 0.20 deleterious(0.03) benign(0.247) TCGA-F5-6814-01 1 44687274 44687274 C T ERI3 Missense_Mutation p.A324T 0.25 tolerated(0.42) possibly_damaging(0.558) TCGA-F5-6814-01 1 45166689 45166689 T G C1orf228 Missense_Mutation p.N179K 0.27 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 45228086 45228086 T C KIF2C Missense_Mutation p.M607T 0.15 tolerated(0.67) benign(0) TCGA-F5-6814-01 1 45340256 45340256 G T EIF2B3 Intron 0.22 TCGA-F5-6814-01 1 45484881 45484881 G A ZSWIM5 Missense_Mutation p.R935C 0.20 deleterious(0.02) unknown(0) TCGA-F5-6814-01 1 45810568 45810568 C T TESK2 Missense_Mutation p.A554T 0.34 tolerated_low_confidence(0.17) benign(0) TCGA-F5-6814-01 1 45966057 45966057 C A MMACHC Missense_Mutation p.P18H 0.12 deleterious(0) probably_damaging(0.923) TCGA-F5-6814-01 1 46032691 46032691 G T AKR1A1 Nonsense_Mutation p.E119* 0.28 TCGA-F5-6814-01 1 46120921 46120921 C T GPBP1L1 Missense_Mutation p.R44H 0.12 tolerated(0.07) benign(0.035) TCGA-F5-6814-01 1 46159524 46159524 G T TMEM69 Missense_Mutation p.V231L 0.31 tolerated(0.69) benign(0.003) TCGA-F5-6814-01 1 46180090 46180090 C T IPP Missense_Mutation p.R453H 0.20 tolerated(0.16) benign(0.032) TCGA-F5-6814-01 1 46500836 46500836 C T MAST2 Missense_Mutation p.R1499C 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 1 46733145 46733145 G T RAD54L Missense_Mutation p.K302N 0.20 deleterious(0) probably_damaging(0.956) TCGA-F5-6814-01 1 47078860 47078860 C T MOB3C Missense_Mutation p.R97H 0.22 deleterious(0.01) benign(0.06) TCGA-F5-6814-01 1 47351139 47351139 G A CYP4Z2P RNA 0.43 TCGA-F5-6814-01 1 47400780 47400780 C A CYP4A11 Missense_Mutation p.V228F 0.19 tolerated(0.38) benign(0.008) TCGA-F5-6814-01 1 47564786 47564786 C A CYP4Z1 Missense_Mutation p.F299L 0.46 tolerated(1) possibly_damaging(0.787) TCGA-F5-6814-01 1 47583644 47583644 T A CYP4Z1 3'UTR 0.40 TCGA-F5-6814-01 1 47685614 47685614 C T TAL1 Silent p.K258K 0.44 TCGA-F5-6814-01 1 4834566 4834566 G A AJAP1 3'UTR 0.36 TCGA-F5-6814-01 1 49193549 49193549 A G BEND5 3'UTR 0.10 TCGA-F5-6814-01 1 49224724 49224724 C T BEND5 Missense_Mutation p.R198H 0.24 deleterious(0) possibly_damaging(0.719) TCGA-F5-6814-01 1 50666894 50666894 G A ELAVL4 3'UTR 0.60 TCGA-F5-6814-01 1 51584339 51584339 G T C1orf185 Nonsense_Mutation p.E42* 0.22 TCGA-F5-6814-01 1 51913778 51913778 C A EPS15 Missense_Mutation p.E197D 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-F5-6814-01 1 52135132 52135132 G A OSBPL9 Silent p.E63E 0.14 TCGA-F5-6814-01 1 52179732 52179732 G A OSBPL9 Missense_Mutation p.R100Q 0.10 deleterious(0.01) possibly_damaging(0.716) TCGA-F5-6814-01 1 52285493 52285493 C A NRD1 Missense_Mutation p.A492S 0.07 tolerated(0.47) benign(0.16) TCGA-F5-6814-01 1 52442689 52442689 C T RAB3B Missense_Mutation p.G34D 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 52729541 52729541 A C ZFYVE9 Missense_Mutation p.N759H 0.11 deleterious(0.05) probably_damaging(0.992) TCGA-F5-6814-01 1 52759180 52759180 T C ZFYVE9 Silent p.S1027S 0.15 TCGA-F5-6814-01 1 52820533 52820533 T G CC2D1B Missense_Mutation p.K779T 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 52962762 52962762 C A ZCCHC11 Nonsense_Mutation p.E365* 0.28 TCGA-F5-6814-01 1 53068156 53068156 C A GPX7 Missense_Mutation p.F25L 0.32 tolerated(0.11) benign(0.06) TCGA-F5-6814-01 1 53322771 53322771 A C ZYG11A Missense_Mutation p.K120Q 0.36 tolerated(0.08) benign(0.098) TCGA-F5-6814-01 1 53322926 53322926 T G ZYG11A Missense_Mutation p.N171K 0.37 tolerated(0.09) benign(0.062) TCGA-F5-6814-01 1 53323337 53323337 A G ZYG11A Silent p.R308R 0.19 TCGA-F5-6814-01 1 53329733 53329733 A G ZYG11A Silent p.T410T 0.22 TCGA-F5-6814-01 1 53352637 53352637 G T ZYG11A Missense_Mutation p.K672N 0.14 tolerated(0.51) benign(0.051) TCGA-F5-6814-01 1 53537263 53537263 G T PODN Missense_Mutation p.E171D 0.19 tolerated(0.06) possibly_damaging(0.594) TCGA-F5-6814-01 1 53544534 53544534 G A PODN Missense_Mutation p.R499Q 0.11 tolerated(0.09) possibly_damaging(0.477) TCGA-F5-6814-01 1 53574117 53574117 C T SLC1A7 Intron 0.25 TCGA-F5-6814-01 1 53676094 53676094 A C CPT2 Missense_Mutation p.N250H 0.41 tolerated(1) benign(0.026) TCGA-F5-6814-01 1 53676386 53676386 G A CPT2 Missense_Mutation p.G347D 0.26 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 1 53683842 53683842 A G C1orf123 Splice_Site p.X87_splice 0.11 TCGA-F5-6814-01 1 53930480 53930480 C A DMRTB1 Missense_Mutation p.F307L 0.40 tolerated(0.18) possibly_damaging(0.81) TCGA-F5-6814-01 1 54371824 54371824 C T DIO1 Missense_Mutation p.R180C 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 54506472 54506472 G T TMEM59 Missense_Mutation p.L222I 0.33 tolerated(0.32) benign(0.005) TCGA-F5-6814-01 1 54512963 54512963 C T TMEM59 Missense_Mutation p.R91Q 0.30 tolerated(0.57) benign(0.033) TCGA-F5-6814-01 1 55065069 55065069 A G ACOT11 Missense_Mutation p.N289D 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 1 55077400 55077400 C A FAM151A Missense_Mutation p.W273C 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 55078374 55078374 G T FAM151A Silent p.A195A 0.37 TCGA-F5-6814-01 1 55118781 55118781 T G MROH7 Missense_Mutation p.L61R 0.19 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F5-6814-01 1 55224422 55224422 C T PARS2 Missense_Mutation p.G138D 0.13 tolerated(0.14) possibly_damaging(0.593) TCGA-F5-6814-01 1 55474284 55474284 C T BSND Missense_Mutation p.P316S 0.29 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 1 55521681 55521681 G T PCSK9 Missense_Mutation p.R272L 0.21 tolerated(0.12) benign(0.009) TCGA-F5-6814-01 1 55523054 55523054 G A PCSK9 Silent p.G349G 0.50 TCGA-F5-6814-01 1 55590278 55590278 A C USP24 Silent p.T1328T 0.12 TCGA-F5-6814-01 1 55622667 55622667 C T USP24 Missense_Mutation p.G467D 0.26 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 1 57173343 57173343 T G PRKAA2 Missense_Mutation p.F539C 0.19 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 1 57173436 57173436 C A PRKAA2 3'UTR 0.27 TCGA-F5-6814-01 1 57189338 57189338 A C C1orf168 Missense_Mutation p.F633V 0.23 tolerated(0.07) probably_damaging(0.939) TCGA-F5-6814-01 1 57206423 57206423 C A C1orf168 Missense_Mutation p.K550N 0.18 deleterious(0.01) possibly_damaging(0.842) TCGA-F5-6814-01 1 57219595 57219595 C A C1orf168 Missense_Mutation p.D382Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 1 57258066 57258066 G T C1orf168 Silent p.L140L 0.08 TCGA-F5-6814-01 1 57320503 57320503 C A C8A 5'UTR 0.23 TCGA-F5-6814-01 1 57373668 57373668 C A C8A Missense_Mutation p.S421Y 0.19 deleterious(0.02) probably_damaging(0.951) TCGA-F5-6814-01 1 57399134 57399134 C A C8B Missense_Mutation p.A476S 0.32 tolerated(0.39) benign(0.031) TCGA-F5-6814-01 1 57481010 57481010 A G DAB1 Silent p.A330A 0.27 TCGA-F5-6814-01 1 58999940 58999940 C A OMA1 Nonsense_Mutation p.E265* 0.09 TCGA-F5-6814-01 1 59247955 59247955 C T JUN Missense_Mutation p.R263H 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 60463384 60463384 G A C1orf87 Silent p.F459F 0.43 TCGA-F5-6814-01 1 6158553 6158553 G A KCNAB2 Silent p.P389P 0.13 TCGA-F5-6814-01 1 61824830 61824830 G A NFIA Missense_Mutation p.R322H 0.13 deleterious(0) benign(0.014) TCGA-F5-6814-01 1 61892174 61892174 C T NFIA Silent p.F531F 0.36 TCGA-F5-6814-01 1 61921115 61921115 G T NFIA 3'UTR 0.33 TCGA-F5-6814-01 1 62228558 62228558 A C INADL 5'UTR 0.28 TCGA-F5-6814-01 1 62240953 62240953 A C INADL Missense_Mutation p.K266Q 0.31 deleterious(0.01) probably_damaging(0.955) TCGA-F5-6814-01 1 62267387 62267387 A C INADL Missense_Mutation p.K499Q 0.38 tolerated(0.83) benign(0.001) TCGA-F5-6814-01 1 62293125 62293125 G A INADL Missense_Mutation p.R617H 0.09 tolerated(0.19) probably_damaging(1) TCGA-F5-6814-01 1 62340921 62340921 G T INADL Nonsense_Mutation p.E948* 0.38 TCGA-F5-6814-01 1 62350017 62350017 G A INADL Missense_Mutation p.R1023Q 0.09 tolerated(0.17) benign(0.007) TCGA-F5-6814-01 1 62672248 62672248 A C L1TD1 5'UTR 0.37 TCGA-F5-6814-01 1 62672743 62672743 A C L1TD1 Missense_Mutation p.N148T 0.12 deleterious(0.02) unknown(0) TCGA-F5-6814-01 1 62704029 62704029 C T KANK4 Missense_Mutation p.A970T 0.19 deleterious(0.04) benign(0.004) TCGA-F5-6814-01 1 62740724 62740724 C A KANK4 Missense_Mutation p.D18Y 0.35 deleterious(0) benign(0.192) TCGA-F5-6814-01 1 62905628 62905628 A C USP1 Missense_Mutation p.K30N 0.09 deleterious(0) possibly_damaging(0.894) TCGA-F5-6814-01 1 62907962 62907962 A G USP1 Missense_Mutation p.K130E 0.34 tolerated(0.42) benign(0.006) TCGA-F5-6814-01 1 62941772 62941772 T G DOCK7 Missense_Mutation p.N1866T 0.07 tolerated(0.27) benign(0.079) TCGA-F5-6814-01 1 63003706 63003706 C T DOCK7 Silent p.P1078P 0.10 TCGA-F5-6814-01 1 63270865 63270865 G A ATG4C Silent p.T33T 0.28 TCGA-F5-6814-01 1 63790563 63790563 C T FOXD3 3'UTR 0.18 TCGA-F5-6814-01 1 63871992 63871992 A C ALG6 Missense_Mutation p.L117F 0.08 tolerated(0.31) benign(0.015) TCGA-F5-6814-01 1 63885039 63885039 A C ALG6 Splice_Site p.X330_splice 0.12 TCGA-F5-6814-01 1 6399587 6399587 G A ACOT7 Silent p.I118I 0.19 TCGA-F5-6814-01 1 64059125 64059125 T C PGM1 5'UTR 0.35 TCGA-F5-6814-01 1 64095251 64095251 T G PGM1 Silent p.S152S 0.13 TCGA-F5-6814-01 1 64515592 64515592 C T ROR1 Silent p.C131C 0.31 TCGA-F5-6814-01 1 64515634 64515634 C A ROR1 Silent p.V145V 0.15 TCGA-F5-6814-01 1 64644499 64644499 T C ROR1 Silent p.I925I 0.16 TCGA-F5-6814-01 1 65068539 65068539 G A CACHD1 Missense_Mutation p.R103Q 0.17 tolerated(0.48) possibly_damaging(0.58) TCGA-F5-6814-01 1 65099910 65099910 C T CACHD1 Nonsense_Mutation p.R274* 0.33 TCGA-F5-6814-01 1 65141122 65141122 C A CACHD1 Silent p.S871S 0.30 TCGA-F5-6814-01 1 6521252 6521252 G T TNFRSF25 3'UTR 0.13 TCGA-F5-6814-01 1 65272911 65272911 A C RAVER2 Missense_Mutation p.Q465H 0.16 tolerated(0.21) possibly_damaging(0.525) TCGA-F5-6814-01 1 65305286 65305286 C T JAK1 Missense_Mutation p.G948R 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 65691748 65691748 G A AK4 Missense_Mutation p.S187N 0.10 tolerated(0.2) benign(0.002) TCGA-F5-6814-01 1 65849975 65849975 C T DNAJC6 Nonsense_Mutation p.R256* 0.25 TCGA-F5-6814-01 1 65855077 65855077 T C DNAJC6 Silent p.N444N 0.13 TCGA-F5-6814-01 1 66036155 66036155 G T LEPR Splice_Site p.X14_splice 0.37 TCGA-F5-6814-01 1 66074549 66074549 C T LEPR Missense_Mutation p.R573C 0.27 deleterious(0.01) probably_damaging(0.965) TCGA-F5-6814-01 1 66458547 66458547 G T PDE4B Intron 0.28 TCGA-F5-6814-01 1 66838223 66838223 A G PDE4B Silent p.G691G 0.36 TCGA-F5-6814-01 1 67109280 67109280 T G SGIP1 Missense_Mutation p.S113A 0.21 tolerated(0.56) benign(0.002) TCGA-F5-6814-01 1 67220406 67220406 C A TCTEX1D1 Missense_Mutation p.S22Y 0.26 deleterious(0) probably_damaging(0.959) TCGA-F5-6814-01 1 67241977 67241977 T G TCTEX1D1 Missense_Mutation p.F76C 0.26 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 67327927 67327927 A G WDR78 Silent p.S333S 0.38 TCGA-F5-6814-01 1 67507930 67507930 C T SLC35D1 Missense_Mutation p.D240N 0.38 deleterious(0.01) probably_damaging(0.991) TCGA-F5-6814-01 1 67648533 67648533 C T IL23R Missense_Mutation p.P128S 0.44 deleterious(0) probably_damaging(0.932) TCGA-F5-6814-01 1 67891852 67891852 C A SERBP1 Nonsense_Mutation p.E144* 0.47 TCGA-F5-6814-01 1 68564415 68564415 G A WLS Missense_Mutation p.S511L 0.21 deleterious(0.04) possibly_damaging(0.507) TCGA-F5-6814-01 1 70225951 70225951 G T LRRC7 Nonsense_Mutation p.E22* 0.36 TCGA-F5-6814-01 1 70451988 70451988 G T LRRC7 Missense_Mutation p.D246Y 0.13 deleterious(0) probably_damaging(0.931) TCGA-F5-6814-01 1 70452001 70452001 C A LRRC7 Missense_Mutation p.S250Y 0.35 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 1 70504011 70504011 C T LRRC7 Missense_Mutation p.S797L 0.13 deleterious_low_confidence(0) benign(0.033) TCGA-F5-6814-01 1 70504263 70504263 C A LRRC7 Missense_Mutation p.S881Y 0.41 tolerated_low_confidence(0.27) benign(0.255) TCGA-F5-6814-01 1 70616871 70616871 G T LRRC40 Missense_Mutation p.S486Y 0.34 deleterious(0) probably_damaging(0.943) TCGA-F5-6814-01 1 70703196 70703196 C T SRSF11 Nonsense_Mutation p.R227* 0.20 TCGA-F5-6814-01 1 71478095 71478095 C A PTGER3 Nonsense_Mutation p.E324* 0.19 TCGA-F5-6814-01 1 71532463 71532463 C T ZRANB2 Missense_Mutation p.E309K 0.27 deleterious_low_confidence(0.04) unknown(0) TCGA-F5-6814-01 1 71532579 71532579 C T ZRANB2 Missense_Mutation p.R270Q 0.24 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 1 71533381 71533381 C A ZRANB2 Intron 0.09 TCGA-F5-6814-01 1 71535018 71535018 C T ZRANB2 Silent p.S237S 0.45 TCGA-F5-6814-01 1 72400853 72400853 C T NEGR1 Silent p.Q106Q 0.11 TCGA-F5-6814-01 1 74506930 74506930 C A LRRIQ3 Missense_Mutation p.R562I 0.08 deleterious(0.03) benign(0.044) TCGA-F5-6814-01 1 74621425 74621425 T G LRRIQ3 Missense_Mutation p.K233N 0.12 deleterious(0) possibly_damaging(0.559) TCGA-F5-6814-01 1 74621436 74621436 A T LRRIQ3 Missense_Mutation p.L230I 0.18 tolerated(0.11) benign(0.149) TCGA-F5-6814-01 1 74649216 74649216 A G LRRIQ3 Silent p.S51S 0.20 TCGA-F5-6814-01 1 74819664 74819664 G T FPGT-TNNI3K Missense_Mutation p.G457V 0.43 deleterious(0.02) possibly_damaging(0.744) TCGA-F5-6814-01 1 75038081 75038081 T C C1orf173 Missense_Mutation p.T1105A 0.50 tolerated(0.34) benign(0.001) TCGA-F5-6814-01 1 75055454 75055454 C A C1orf173 Missense_Mutation p.E679D 0.40 tolerated(0.39) benign(0.088) TCGA-F5-6814-01 1 75072555 75072555 G T C1orf173 Missense_Mutation p.P407T 0.30 tolerated(0.61) benign(0.011) TCGA-F5-6814-01 1 75171900 75171900 T G CRYZ 3'UTR 0.45 TCGA-F5-6814-01 1 75171906 75171906 A C CRYZ 3'UTR 0.40 TCGA-F5-6814-01 1 75184909 75184909 G A CRYZ Nonsense_Mutation p.R138* 0.34 TCGA-F5-6814-01 1 75190403 75190403 C A CRYZ Missense_Mutation p.D35Y 0.09 deleterious(0.02) benign(0.442) TCGA-F5-6814-01 1 75190459 75190459 A C CRYZ Missense_Mutation p.F16C 0.50 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 1 75229645 75229645 G T TYW3 Nonsense_Mutation p.E210* 0.41 TCGA-F5-6814-01 1 75602318 75602318 C T LHX8 Missense_Mutation p.R17W 0.32 deleterious_low_confidence(0.02) benign(0.14) TCGA-F5-6814-01 1 75606785 75606785 A G LHX8 Missense_Mutation p.Y128C 0.39 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 1 75608959 75608959 G T LHX8 Missense_Mutation p.E182D 0.44 tolerated(0.28) benign(0.366) TCGA-F5-6814-01 1 75626549 75626549 C A LHX8 Nonsense_Mutation p.S347* 0.34 TCGA-F5-6814-01 1 76228443 76228443 A C ACADM Missense_Mutation p.N425H 0.30 deleterious_low_confidence(0.03) benign(0.005) TCGA-F5-6814-01 1 76257917 76257917 A G RABGGTB Missense_Mutation p.N211D 0.11 tolerated(1) benign(0.007) TCGA-F5-6814-01 1 76259816 76259816 A C RABGGTB Silent p.I251I 0.37 TCGA-F5-6814-01 1 76280746 76280746 A G MSH4 Missense_Mutation p.E247G 0.37 deleterious(0) possibly_damaging(0.596) TCGA-F5-6814-01 1 76288153 76288153 G A MSH4 Missense_Mutation p.R350Q 0.09 deleterious(0.04) probably_damaging(0.956) TCGA-F5-6814-01 1 76288162 76288162 C A MSH4 Missense_Mutation p.S353Y 0.40 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 1 76343955 76343955 C A MSH4 Missense_Mutation p.L498I 0.37 deleterious(0.01) probably_damaging(0.962) TCGA-F5-6814-01 1 76345822 76345822 T G MSH4 Missense_Mutation p.Y589D 0.23 deleterious(0) possibly_damaging(0.542) TCGA-F5-6814-01 1 76354945 76354945 T C MSH4 Missense_Mutation p.V706A 0.12 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 1 76877876 76877876 G A ST6GALNAC3 Missense_Mutation p.V133I 0.11 possibly_damaging(0.876) TCGA-F5-6814-01 1 77094599 77094599 G T ST6GALNAC3 3'UTR 0.53 TCGA-F5-6814-01 1 77509959 77509959 G A ST6GALNAC5 Missense_Mutation p.G111D 0.41 probably_damaging(1) TCGA-F5-6814-01 1 77510159 77510159 C T ST6GALNAC5 Missense_Mutation p.R178W 0.35 probably_damaging(1) TCGA-F5-6814-01 1 77763313 77763313 C A AK5 Missense_Mutation p.S162Y 0.30 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 77987619 77987619 C T AK5 Silent p.F473F 0.29 TCGA-F5-6814-01 1 78105173 78105173 C A ZZZ3 5'UTR 0.22 TCGA-F5-6814-01 1 78177520 78177520 A G USP33 Missense_Mutation p.V804A 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 1 78207335 78207335 T A USP33 Missense_Mutation p.E47D 0.37 tolerated(0.2) probably_damaging(0.997) TCGA-F5-6814-01 1 78207370 78207370 G A USP33 Nonsense_Mutation p.R36* 0.35 TCGA-F5-6814-01 1 78279425 78279425 A G FAM73A Missense_Mutation p.E215G 0.17 deleterious(0) possibly_damaging(0.848) TCGA-F5-6814-01 1 78325057 78325057 C T FAM73A Nonsense_Mutation p.R392* 0.35 TCGA-F5-6814-01 1 78325766 78325766 G T FAM73A Missense_Mutation p.E410D 0.46 tolerated(0.23) benign(0.007) TCGA-F5-6814-01 1 78383254 78383254 C A NEXN Missense_Mutation p.L11M 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 1 78395182 78395182 G T NEXN Missense_Mutation p.R349I 0.39 deleterious(0) benign(0.003) TCGA-F5-6814-01 1 78399112 78399112 A C NEXN Missense_Mutation p.K400T 0.32 deleterious(0) probably_damaging(0.91) TCGA-F5-6814-01 1 78422346 78422346 G A FUBP1 Missense_Mutation p.A539V 0.21 tolerated(0.25) unknown(0) TCGA-F5-6814-01 1 78432388 78432388 C A FUBP1 Nonsense_Mutation p.E155* 0.32 TCGA-F5-6814-01 1 78482035 78482035 C A DNAJB4 3'UTR 0.67 TCGA-F5-6814-01 1 78546461 78546461 G A GIPC2 Missense_Mutation p.E115K 0.38 tolerated(1) benign(0) TCGA-F5-6814-01 1 78585115 78585115 G T GIPC2 Nonsense_Mutation p.E216* 0.48 TCGA-F5-6814-01 1 78958662 78958662 C A PTGFR Missense_Mutation p.F78L 0.09 tolerated(0.82) benign(0.001) TCGA-F5-6814-01 1 7904098 7904098 T G PER3 3'UTR 0.33 TCGA-F5-6814-01 1 79094656 79094656 G A IFI44L Missense_Mutation p.D167N 0.30 tolerated(0.69) benign(0.001) TCGA-F5-6814-01 1 79106735 79106735 G A IFI44L Missense_Mutation p.V360M 0.35 deleterious(0.02) possibly_damaging(0.672) TCGA-F5-6814-01 1 79106796 79106796 C T IFI44L Missense_Mutation p.S380F 0.35 tolerated(0.88) benign(0.128) TCGA-F5-6814-01 1 79125147 79125147 C T IFI44 Nonsense_Mutation p.R331* 0.32 TCGA-F5-6814-01 1 79356636 79356636 G T ELTD1 3'UTR 0.23 TCGA-F5-6814-01 1 79356814 79356814 T C ELTD1 3'UTR 0.11 TCGA-F5-6814-01 1 79383721 79383721 G T ELTD1 Silent p.I492I 0.25 TCGA-F5-6814-01 1 79392576 79392576 G A ELTD1 Nonsense_Mutation p.R360* 0.11 TCGA-F5-6814-01 1 79392590 79392590 A C ELTD1 Missense_Mutation p.F355C 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 79404886 79404886 T G ELTD1 Missense_Mutation p.K128T 0.08 tolerated(0.13) benign(0.394) TCGA-F5-6814-01 1 79470820 79470820 C T ELTD1 Missense_Mutation p.R36H 0.26 tolerated_low_confidence(0.19) benign(0.001) TCGA-F5-6814-01 1 8073434 8073434 T G ERRFI1 Missense_Mutation p.K409Q 0.38 deleterious(0.04) benign(0.051) TCGA-F5-6814-01 1 809569 809569 A C FAM41C 5'Flank 0.40 TCGA-F5-6814-01 1 82402438 82402438 T C LPHN2 Missense_Mutation p.V105A 0.39 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 82433740 82433740 T G LPHN2 Missense_Mutation p.F777V 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 1 82436139 82436139 G A LPHN2 Missense_Mutation p.V942I 0.47 tolerated(0.06) benign(0.135) TCGA-F5-6814-01 1 8418576 8418576 G T RERE Missense_Mutation p.A1340D 0.15 unknown(0) TCGA-F5-6814-01 1 84408233 84408233 C T TTLL7 Silent p.S212S 0.27 TCGA-F5-6814-01 1 84815404 84815404 G A SAMD13 Missense_Mutation p.E100K 0.30 tolerated(0.09) probably_damaging(0.988) TCGA-F5-6814-01 1 84878192 84878192 A C DNASE2B Missense_Mutation p.K236N 0.18 tolerated(1) benign(0.002) TCGA-F5-6814-01 1 84880441 84880441 A C DNASE2B Missense_Mutation p.N326H 0.07 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 85029507 85029507 C A CTBS Missense_Mutation p.D236Y 0.26 deleterious(0) possibly_damaging(0.796) TCGA-F5-6814-01 1 85128033 85128033 G T SSX2IP Missense_Mutation p.L259I 0.43 tolerated(0.12) benign(0.44) TCGA-F5-6814-01 1 85486850 85486850 A C MCOLN3 Missense_Mutation p.F477C 0.14 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 1 85595745 85595745 C T WDR63 Missense_Mutation p.R828C 0.34 deleterious(0.01) probably_damaging(0.991) TCGA-F5-6814-01 1 85595769 85595769 G T WDR63 Nonsense_Mutation p.E836* 0.23 TCGA-F5-6814-01 1 86487927 86487927 G T COL24A1 Missense_Mutation p.P751H 0.34 deleterious(0.01) probably_damaging(0.959) TCGA-F5-6814-01 1 86590792 86590792 C A COL24A1 Missense_Mutation p.K409N 0.28 tolerated(0.2) benign(0.038) TCGA-F5-6814-01 1 86821048 86821048 C A ODF2L Intron 0.35 TCGA-F5-6814-01 1 86900207 86900207 G T CLCA2 Nonsense_Mutation p.E251* 0.21 TCGA-F5-6814-01 1 86904648 86904648 C A CLCA2 Missense_Mutation p.F354L 0.21 deleterious(0) possibly_damaging(0.755) TCGA-F5-6814-01 1 86905903 86905903 C A CLCA2 Missense_Mutation p.L426I 0.10 tolerated(1) benign(0) TCGA-F5-6814-01 1 86921186 86921186 A G CLCA2 Silent p.K936K 0.48 TCGA-F5-6814-01 1 86934608 86934608 G A CLCA1 5'UTR 0.38 TCGA-F5-6814-01 1 86964413 86964413 G A CLCA1 Missense_Mutation p.D758N 0.40 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 1 87012871 87012871 C A CLCA4 Missense_Mutation p.F23L 0.27 tolerated(1) benign(0.001) TCGA-F5-6814-01 1 87031089 87031089 A G CLCA4 Silent p.V230V 0.38 TCGA-F5-6814-01 1 878266 878266 G A SAMD11 Silent p.E464E 0.19 TCGA-F5-6814-01 1 89237523 89237523 A C PKN2 Missense_Mutation p.N316H 0.12 tolerated(0.1) possibly_damaging(0.592) TCGA-F5-6814-01 1 89325918 89325918 G A GTF2B Missense_Mutation p.R104W 0.34 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 1 89434395 89434395 C A CCBL2 Missense_Mutation p.K87N 0.45 tolerated(0.23) benign(0.049) TCGA-F5-6814-01 1 89474762 89474762 T G GBP3 Silent p.I509I 0.34 TCGA-F5-6814-01 1 89479086 89479086 A C GBP3 Missense_Mutation p.F217C 0.47 deleterious(0.04) benign(0.088) TCGA-F5-6814-01 1 89521783 89521783 C T GBP1 Silent p.S428S 0.30 TCGA-F5-6814-01 1 89573928 89573928 C A GBP2 Missense_Mutation p.R569I 0.33 tolerated(0.05) benign(0.013) TCGA-F5-6814-01 1 89730390 89730390 T G GBP5 Missense_Mutation p.Q376H 0.22 tolerated(0.27) benign(0.029) TCGA-F5-6814-01 1 89735114 89735114 G A GBP5 Missense_Mutation p.A42V 0.42 deleterious(0.01) possibly_damaging(0.663) TCGA-F5-6814-01 1 89834201 89834201 C T GBP6 Missense_Mutation p.L31F 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 1 89848346 89848346 T G GBP6 Missense_Mutation p.F426V 0.44 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 1 90049614 90049614 C T LRRC8B Missense_Mutation p.R469C 0.33 tolerated(0.18) benign(0.003) TCGA-F5-6814-01 1 90178929 90178929 T C LRRC8C Missense_Mutation p.V267A 0.08 deleterious(0.05) benign(0.129) TCGA-F5-6814-01 1 91182213 91182213 C A BARHL2 Missense_Mutation p.E180D 0.39 tolerated(0.62) unknown(0) TCGA-F5-6814-01 1 91182648 91182648 G A BARHL2 Silent p.L35L 0.13 TCGA-F5-6814-01 1 91403434 91403434 C T ZNF644 Missense_Mutation p.R1099H 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 1 91404025 91404025 C A ZNF644 Missense_Mutation p.K962N 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6814-01 1 91404249 91404249 T G ZNF644 Missense_Mutation p.N888H 0.40 tolerated(0.21) possibly_damaging(0.602) TCGA-F5-6814-01 1 91404364 91404364 C A ZNF644 Missense_Mutation p.K849N 0.38 deleterious(0) possibly_damaging(0.597) TCGA-F5-6814-01 1 915265 915265 G T C1orf170 Missense_Mutation p.S288Y 0.14 tolerated(0.11) benign(0.1) TCGA-F5-6814-01 1 91727838 91727838 A C HFM1 Missense_Mutation p.F1400V 0.37 deleterious_low_confidence(0.01) benign(0.014) TCGA-F5-6814-01 1 91851215 91851215 T G HFM1 Missense_Mutation p.N224T 0.33 tolerated_low_confidence(0.07) benign(0.034) TCGA-F5-6814-01 1 91973436 91973436 T G CDC7 Silent p.L47L 0.14 TCGA-F5-6814-01 1 92185447 92185447 G A TGFBR3 Intron 0.14 TCGA-F5-6814-01 1 92187538 92187538 C A TGFBR3 Missense_Mutation p.R350I 0.25 deleterious(0) possibly_damaging(0.563) TCGA-F5-6814-01 1 92430203 92430203 A C BRDT Missense_Mutation p.K71T 0.35 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 1 92442719 92442719 A C BRDT Missense_Mutation p.K246N 0.31 tolerated(0.11) benign(0.292) TCGA-F5-6814-01 1 92446279 92446279 A C BRDT Missense_Mutation p.K456T 0.14 deleterious(0.02) benign(0.424) TCGA-F5-6814-01 1 92511190 92511190 A C EPHX4 Missense_Mutation p.N193H 0.16 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 1 92568180 92568180 A C BTBD8 Missense_Mutation p.E166D 0.26 tolerated(0.2) benign(0.004) TCGA-F5-6814-01 1 92604920 92604920 G T BTBD8 Nonsense_Mutation p.E256* 0.14 TCGA-F5-6814-01 1 92646491 92646491 T G KIAA1107 Missense_Mutation p.F646C 0.30 tolerated(0.17) benign(0.002) TCGA-F5-6814-01 1 92646812 92646812 C T KIAA1107 Missense_Mutation p.A753V 0.08 tolerated(0.92) benign(0.053) TCGA-F5-6814-01 1 92647819 92647819 A G KIAA1107 Missense_Mutation p.K1089E 0.29 tolerated(0.24) benign(0.016) TCGA-F5-6814-01 1 92772826 92772826 G T RPAP2 Nonsense_Mutation p.E161* 0.19 TCGA-F5-6814-01 1 92789612 92789612 A G RPAP2 Missense_Mutation p.T379A 0.33 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 92789734 92789734 T G RPAP2 Missense_Mutation p.H419Q 0.17 tolerated(0.17) benign(0.169) TCGA-F5-6814-01 1 92948604 92948604 C T GFI1 Splice_Site p.X39_splice 0.33 TCGA-F5-6814-01 1 93168955 93168955 C A EVI5 Missense_Mutation p.M231I 0.39 tolerated(0.16) benign(0.055) TCGA-F5-6814-01 1 93299171 93299171 A C RPL5 Missense_Mutation p.K48T 0.15 deleterious(0) probably_damaging(0.925) TCGA-F5-6814-01 1 93307331 93307331 G A RPL5 Missense_Mutation p.R268H 0.41 tolerated(0.54) benign(0.051) TCGA-F5-6814-01 1 93575914 93575914 A C MTF2 Missense_Mutation p.K45Q 0.34 deleterious(0.01) probably_damaging(0.909) TCGA-F5-6814-01 1 94049669 94049669 T C BCAR3 Silent p.E313E 0.26 TCGA-F5-6814-01 1 94466426 94466426 G A ABCA4 Nonsense_Mutation p.R2149* 0.31 TCGA-F5-6814-01 1 94471026 94471026 G A ABCA4 Nonsense_Mutation p.R2040* 0.45 TCGA-F5-6814-01 1 94512597 94512597 C A ABCA4 Missense_Mutation p.K932N 0.42 deleterious(0.01) benign(0.003) TCGA-F5-6814-01 1 94520707 94520707 G T ABCA4 Silent p.V849V 0.24 TCGA-F5-6814-01 1 94544945 94544945 T G ABCA4 Missense_Mutation p.K391T 0.40 deleterious(0.01) possibly_damaging(0.456) TCGA-F5-6814-01 1 94640224 94640224 G T ARHGAP29 Missense_Mutation p.S996Y 0.23 tolerated(1) benign(0.11) TCGA-F5-6814-01 1 95530544 95530544 G A ALG14 Missense_Mutation p.L56F 0.38 tolerated(0.06) possibly_damaging(0.908) TCGA-F5-6814-01 1 95657339 95657339 A C TMEM56 Missense_Mutation p.K236T 0.09 deleterious(0) possibly_damaging(0.877) TCGA-F5-6814-01 1 9778954 9778954 A C PIK3CD Missense_Mutation p.K408T 0.33 tolerated(0.08) probably_damaging(0.981) TCGA-F5-6814-01 1 9782071 9782071 C A PIK3CD Missense_Mutation p.F698L 0.34 tolerated(1) benign(0) TCGA-F5-6814-01 1 9794133 9794133 T C CLSTN1 Silent p.G726G 0.09 TCGA-F5-6814-01 1 99422182 99422182 C T LPPR5 Missense_Mutation p.R118Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 1 99422274 99422274 G A LPPR5 Silent p.V87V 0.09 TCGA-F5-6814-01 1 99772327 99772327 C T LPPR4 Missense_Mutation p.R685C 0.21 deleterious(0.03) possibly_damaging(0.794) TCGA-F5-6814-01 20 10019081 10019081 A T ANKEF1 Missense_Mutation p.E44D 0.08 tolerated(0.3) benign(0.035) TCGA-F5-6814-01 20 10256186 10256186 G A SNAP25 Missense_Mutation p.R16Q 0.10 tolerated(0.31) benign(0.001) TCGA-F5-6814-01 20 10277591 10277591 T G SNAP25 Silent p.A100A 0.46 TCGA-F5-6814-01 20 10385892 10385892 C A MKKS 3'UTR 0.35 TCGA-F5-6814-01 20 10393840 10393840 C T MKKS Missense_Mutation p.R108K 0.56 tolerated(0.71) benign(0.006) TCGA-F5-6814-01 20 1161658 1161658 C T TMEM74B Missense_Mutation p.G202D 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 1210624 1210624 T G RAD21L1 Missense_Mutation p.F82C 0.25 deleterious(0) probably_damaging(0.928) TCGA-F5-6814-01 20 126299 126299 C T DEFB126 Missense_Mutation p.S101L 0.17 deleterious(0.03) unknown(0) TCGA-F5-6814-01 20 13055139 13055139 G T SPTLC3 Nonsense_Mutation p.E201* 0.30 TCGA-F5-6814-01 20 13055141 13055141 A C SPTLC3 Missense_Mutation p.E201D 0.33 tolerated(0.2) probably_damaging(0.999) TCGA-F5-6814-01 20 13514737 13514737 C T TASP1 Missense_Mutation p.E243K 0.42 tolerated(0.17) benign(0.028) TCGA-F5-6814-01 20 13695576 13695576 G T ESF1 Missense_Mutation p.S834Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 20 13747513 13747513 A C ESF1 Missense_Mutation p.F526C 0.44 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 20 13763672 13763672 G A ESF1 Nonsense_Mutation p.R39* 0.36 TCGA-F5-6814-01 20 13869149 13869149 A C SEL1L2 Missense_Mutation p.F187V 0.39 deleterious(0) possibly_damaging(0.527) TCGA-F5-6814-01 20 14306252 14306252 C T FLRT3 Missense_Mutation p.R634Q 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 20 1445016 1445016 G A NSFL1C Missense_Mutation p.S54L 0.30 tolerated(0.15) benign(0.219) TCGA-F5-6814-01 20 16030535 16030535 C T MACROD2 3'UTR 0.19 TCGA-F5-6814-01 20 1629798 1629798 G A SIRPG Silent p.T110T 0.37 TCGA-F5-6814-01 20 16360665 16360665 C T KIF16B Missense_Mutation p.R661H 0.15 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 20 16721675 16721675 G T SNRPB2 3'UTR 0.13 TCGA-F5-6814-01 20 17475269 17475269 C A BFSP1 Missense_Mutation p.R483I 0.41 deleterious(0.03) benign(0.081) TCGA-F5-6814-01 20 17594673 17594673 C A RRBP1 3'UTR 0.35 TCGA-F5-6814-01 20 17639498 17639498 G A RRBP1 Intron 0.12 TCGA-F5-6814-01 20 17928145 17928145 C T SNX5 Missense_Mutation p.E355K 0.30 tolerated(0.2) benign(0.053) TCGA-F5-6814-01 20 18131539 18131539 T C CSRP2BP Silent p.D151D 0.37 TCGA-F5-6814-01 20 18142572 18142572 G A CSRP2BP Missense_Mutation p.R264Q 0.28 deleterious(0.05) possibly_damaging(0.603) TCGA-F5-6814-01 20 18396052 18396052 C A DZANK1 Missense_Mutation p.Q332H 0.20 deleterious(0.02) benign(0.046) TCGA-F5-6814-01 20 18424064 18424064 C T DZANK1 Missense_Mutation p.R225H 0.19 tolerated(0.41) benign(0.048) TCGA-F5-6814-01 20 18434413 18434413 T C DZANK1 Missense_Mutation p.N146S 0.09 tolerated(0.77) benign(0.016) TCGA-F5-6814-01 20 18455786 18455786 G T POLR3F Missense_Mutation p.K128N 0.37 deleterious(0) probably_damaging(0.955) TCGA-F5-6814-01 20 18511416 18511416 G A SEC23B Missense_Mutation p.R401Q 0.10 tolerated(0.47) benign(0.001) TCGA-F5-6814-01 20 18523043 18523043 G A SEC23B Missense_Mutation p.R503Q 0.36 deleterious(0.02) possibly_damaging(0.473) TCGA-F5-6814-01 20 18529331 18529331 C A SEC23B Missense_Mutation p.H608N 0.51 tolerated(0.1) benign(0.005) TCGA-F5-6814-01 20 1961091 1961091 G A PDYN Missense_Mutation p.R215C 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 19664825 19664825 T G SLC24A3 Missense_Mutation p.F303V 0.38 tolerated(0.5) benign(0.01) TCGA-F5-6814-01 20 19977369 19977369 G T RIN2 Missense_Mutation p.K798N 0.35 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 20 20006351 20006351 G A NAA20 Missense_Mutation p.A37T 0.44 tolerated(0.2) benign(0.008) TCGA-F5-6814-01 20 20030000 20030000 G A CRNKL1 Silent p.L255L 0.45 TCGA-F5-6814-01 20 20491951 20491951 C A RALGAPA2 Missense_Mutation p.L1625F 0.51 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 20 20493272 20493272 C T RALGAPA2 Missense_Mutation p.D1581N 0.11 tolerated(0.16) benign(0.003) TCGA-F5-6814-01 20 20565589 20565589 C T RALGAPA2 Missense_Mutation p.R817Q 0.25 tolerated(0.1) benign(0.006) TCGA-F5-6814-01 20 20596692 20596692 C A RALGAPA2 Missense_Mutation p.K561N 0.07 tolerated(0.05) benign(0.258) TCGA-F5-6814-01 20 21311153 21311153 A C XRN2 Missense_Mutation p.R154S 0.42 tolerated(0.1) possibly_damaging(0.908) TCGA-F5-6814-01 20 21329051 21329051 A G XRN2 Missense_Mutation p.K616E 0.50 tolerated(0.57) benign(0.002) TCGA-F5-6814-01 20 23066171 23066171 G A CD93 Missense_Mutation p.A220V 0.24 tolerated(1) benign(0.002) TCGA-F5-6814-01 20 23335207 23335207 C T NXT1 3'UTR 0.28 TCGA-F5-6814-01 20 23666402 23666402 C A CST4 3'UTR 0.15 TCGA-F5-6814-01 20 23731299 23731299 G A CST1 Missense_Mutation p.R69W 0.09 tolerated(0.06) benign(0.008) TCGA-F5-6814-01 20 2397951 2397951 A G TGM6 Silent p.R470R 0.19 TCGA-F5-6814-01 20 25004165 25004165 G A ACSS1 Silent p.V248V 0.33 TCGA-F5-6814-01 20 25056756 25056756 G A VSX1 3'UTR 0.42 TCGA-F5-6814-01 20 25282892 25282892 A G ABHD12 Missense_Mutation p.Y374H 0.14 tolerated(0.1) benign(0.104) TCGA-F5-6814-01 20 25434072 25434072 G T NINL 3'UTR 0.35 TCGA-F5-6814-01 20 25470566 25470566 G A NINL Missense_Mutation p.S514L 0.38 deleterious(0) benign(0.432) TCGA-F5-6814-01 20 2593924 2593924 C T TMC2 Missense_Mutation p.R610W 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 2633955 2633955 T G NOP56 Missense_Mutation p.F42V 0.14 deleterious(0) probably_damaging(0.934) TCGA-F5-6814-01 20 2774993 2774993 C T CPXM1 Missense_Mutation p.R683Q 0.43 tolerated(0.06) benign(0.06) TCGA-F5-6814-01 20 3007804 3007804 C T PTPRA Silent p.G582G 0.31 TCGA-F5-6814-01 20 30137906 30137906 T C HM13 Missense_Mutation p.F236L 0.17 deleterious(0.05) benign(0.09) TCGA-F5-6814-01 20 30452779 30452779 G A DUSP15 Silent p.V55V 0.26 TCGA-F5-6814-01 20 30454896 30454896 T G DUSP15 Missense_Mutation p.E39A 0.16 deleterious(0) probably_damaging(0.922) TCGA-F5-6814-01 20 30539733 30539733 C T PDRG1 Missense_Mutation p.R11Q 0.36 tolerated(0.72) benign(0) TCGA-F5-6814-01 20 31021335 31021335 A G ASXL1 Missense_Mutation p.D445G 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-F5-6814-01 20 31375061 31375061 C T DNMT3B Missense_Mutation p.S153L 0.38 tolerated_low_confidence(0.1) benign(0.003) TCGA-F5-6814-01 20 31379488 31379488 C T DNMT3B Nonsense_Mutation p.R299* 0.43 TCGA-F5-6814-01 20 31484273 31484273 A C EFCAB8 Missense_Mutation p.K299N 0.22 TCGA-F5-6814-01 20 31656753 31656753 C T BPIFB3 Missense_Mutation p.P375S 0.33 tolerated(0.47) benign(0.04) TCGA-F5-6814-01 20 3209536 3209536 G A SLC4A11 Nonsense_Mutation p.R757* 0.38 TCGA-F5-6814-01 20 3209996 3209996 G A SLC4A11 Silent p.I658I 0.40 TCGA-F5-6814-01 20 3240624 3240624 A G C20orf194 Missense_Mutation p.I975T 0.10 deleterious(0.05) possibly_damaging(0.904) TCGA-F5-6814-01 20 3274810 3274810 G A C20orf194 Missense_Mutation p.T738I 0.33 deleterious(0.04) benign(0.081) TCGA-F5-6814-01 20 3329185 3329185 G A C20orf194 Missense_Mutation p.S259F 0.38 tolerated(0.13) benign(0.009) TCGA-F5-6814-01 20 33530440 33530440 A C GSS Intron 0.15 TCGA-F5-6814-01 20 3354784 3354784 C A C20orf194 Missense_Mutation p.D175Y 0.09 deleterious(0) probably_damaging(0.977) TCGA-F5-6814-01 20 33572877 33572877 C A MYH7B Missense_Mutation p.F292L 0.42 probably_damaging(0.997) TCGA-F5-6814-01 20 33577900 33577900 G T MYH7B Missense_Mutation p.Q659H 0.29 possibly_damaging(0.717) TCGA-F5-6814-01 20 33592305 33592305 G T TRPC4AP Missense_Mutation p.L669I 0.29 deleterious(0) possibly_damaging(0.897) TCGA-F5-6814-01 20 33764075 33764075 T G PROCR Missense_Mutation p.F143V 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 33902518 33902518 G T UQCC1 Missense_Mutation p.F208L 0.12 deleterious(0.04) probably_damaging(0.93) TCGA-F5-6814-01 20 34084470 34084470 C T CEP250 Nonsense_Mutation p.R1078* 0.38 TCGA-F5-6814-01 20 34116553 34116553 G A C20orf173 Silent p.I155I 0.46 TCGA-F5-6814-01 20 34144806 34144806 C T ERGIC3 Silent p.G319G 0.10 TCGA-F5-6814-01 20 34304677 34304677 T G RBM39 Silent p.G292G 0.13 TCGA-F5-6814-01 20 34542050 34542050 G A SCAND1 Missense_Mutation p.P53S 0.35 tolerated(0.16) benign(0.002) TCGA-F5-6814-01 20 34572022 34572022 C T CNBD2 Missense_Mutation p.P176S 0.25 deleterious(0.04) benign(0.373) TCGA-F5-6814-01 20 35668561 35668561 C T RBL1 Missense_Mutation p.R633Q 0.36 tolerated(0.29) possibly_damaging(0.716) TCGA-F5-6814-01 20 35749389 35749389 T C MROH8 Missense_Mutation p.Q703R 0.14 tolerated(0.42) benign(0.033) TCGA-F5-6814-01 20 35769702 35769702 G T MROH8 Missense_Mutation p.L478I 0.39 deleterious(0.01) probably_damaging(0.945) TCGA-F5-6814-01 20 35827516 35827516 A G RPN2 Missense_Mutation p.T123A 0.28 tolerated(0.88) benign(0.001) TCGA-F5-6814-01 20 35944899 35944899 G A MANBAL 3'UTR 0.33 TCGA-F5-6814-01 20 36147658 36147658 C T BLCAP 5'UTR 0.35 TCGA-F5-6814-01 20 36641522 36641522 C T TTI1 Missense_Mutation p.V233I 0.17 tolerated(0.15) benign(0.045) TCGA-F5-6814-01 20 3669103 3669103 C T SIGLEC1 3'UTR 0.56 TCGA-F5-6814-01 20 3682093 3682093 C T SIGLEC1 Missense_Mutation p.R475H 0.17 tolerated(0.13) benign(0.045) TCGA-F5-6814-01 20 3687004 3687004 G T SIGLEC1 Silent p.V133V 0.33 TCGA-F5-6814-01 20 36952434 36952434 C A BPI Missense_Mutation p.L311I 0.41 tolerated(1) benign(0.062) TCGA-F5-6814-01 20 37117259 37117259 G T RALGAPB Nonsense_Mutation p.E62* 0.29 TCGA-F5-6814-01 20 37182525 37182525 G A RALGAPB Missense_Mutation p.E1060K 0.16 tolerated(0.2) possibly_damaging(0.559) TCGA-F5-6814-01 20 37186988 37186988 G A RALGAPB Silent p.T1141T 0.23 TCGA-F5-6814-01 20 37383628 37383628 T G ACTR5 Nonsense_Mutation p.Y268* 0.43 TCGA-F5-6814-01 20 37531387 37531387 C T PPP1R16B Silent p.I216I 0.22 TCGA-F5-6814-01 20 39709856 39709856 G T TOP1 Missense_Mutation p.K161N 0.40 deleterious(0.04) possibly_damaging(0.788) TCGA-F5-6814-01 20 39725873 39725873 G T TOP1 Missense_Mutation p.K248N 0.26 tolerated(0.08) benign(0.379) TCGA-F5-6814-01 20 39727025 39727025 G A TOP1 Intron 0.61 TCGA-F5-6814-01 20 39742679 39742679 C T TOP1 Missense_Mutation p.R508C 0.23 deleterious(0.02) possibly_damaging(0.818) TCGA-F5-6814-01 20 39831129 39831129 G A ZHX3 Missense_Mutation p.R810C 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 39976248 39976248 C T LPIN3 Silent p.S83S 0.47 TCGA-F5-6814-01 20 39992449 39992449 C A EMILIN3 Missense_Mutation p.D115Y 0.13 deleterious(0) possibly_damaging(0.736) TCGA-F5-6814-01 20 40040829 40040829 G A CHD6 Silent p.S2402S 0.23 TCGA-F5-6814-01 20 40040838 40040838 G A CHD6 Silent p.S2399S 0.31 TCGA-F5-6814-01 20 40049735 40049735 A C CHD6 Nonsense_Mutation p.L1847* 0.21 TCGA-F5-6814-01 20 40143495 40143495 C A CHD6 Silent p.T217T 0.11 TCGA-F5-6814-01 20 40143555 40143555 C A CHD6 Missense_Mutation p.K197N 0.39 deleterious(0) benign(0.235) TCGA-F5-6814-01 20 41420030 41420030 C T PTPRT Silent p.E97E 0.39 TCGA-F5-6814-01 20 42196346 42196346 A G SGK2 Missense_Mutation p.K103R 0.19 tolerated(0.06) benign(0.197) TCGA-F5-6814-01 20 422328 422328 A C TBC1D20 Missense_Mutation p.F177C 0.13 tolerated(0.11) probably_damaging(1) TCGA-F5-6814-01 20 42815237 42815237 C T JPH2 Missense_Mutation p.E37K 0.54 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 20 42825798 42825798 C T OSER1 Missense_Mutation p.R258Q 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-F5-6814-01 20 43384988 43384988 G A RIMS4 Silent p.I200I 0.47 TCGA-F5-6814-01 20 43932954 43932954 G A MATN4 Missense_Mutation p.S186L 0.40 probably_damaging(0.992) TCGA-F5-6814-01 20 43940866 43940866 C T RBPJL Silent p.F150F 0.37 TCGA-F5-6814-01 20 44187568 44187568 T C WFDC8 Missense_Mutation p.N67S 0.30 tolerated(0.59) benign(0.079) TCGA-F5-6814-01 20 44236745 44236745 G T WFDC9 3'UTR 0.41 TCGA-F5-6814-01 20 44236749 44236749 C A WFDC9 Nonstop_Mutation p.*90Yext*17 0.32 TCGA-F5-6814-01 20 44277996 44277996 A G WFDC11 Missense_Mutation p.V48A 0.13 tolerated(0.37) benign(0.006) TCGA-F5-6814-01 20 44333214 44333214 A G WFDC13 Missense_Mutation p.T74A 0.13 tolerated(0.09) benign(0.029) TCGA-F5-6814-01 20 44511465 44511465 C A ZSWIM1 Silent p.I78I 0.45 TCGA-F5-6814-01 20 44579207 44579207 G A ZNF335 Missense_Mutation p.R1073W 0.24 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 44588994 44588994 A C ZNF335 Missense_Mutation p.F625V 0.11 tolerated(0.07) possibly_damaging(0.883) TCGA-F5-6814-01 20 44598308 44598308 G A ZNF335 Missense_Mutation p.S75L 0.58 deleterious_low_confidence(0) benign(0.003) TCGA-F5-6814-01 20 44642437 44642437 T C MMP9 Splice_Site p.X584_splice 0.18 TCGA-F5-6814-01 20 44666013 44666013 G A SLC12A5 Missense_Mutation p.E224K 0.45 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 44672352 44672352 G A SLC12A5 Missense_Mutation p.A463T 0.25 tolerated(0.3) benign(0.053) TCGA-F5-6814-01 20 44672514 44672514 G T SLC12A5 Splice_Site p.X469_splice 0.09 TCGA-F5-6814-01 20 44755285 44755285 G T CD40 Missense_Mutation p.E168D 0.37 deleterious(0.03) benign(0.111) TCGA-F5-6814-01 20 44756984 44756984 A C CD40 Missense_Mutation p.K221T 0.33 tolerated(0.07) benign(0.218) TCGA-F5-6814-01 20 45014803 45014803 C T ELMO2 Missense_Mutation p.E213K 0.24 tolerated(0.8) benign(0.009) TCGA-F5-6814-01 20 45130235 45130235 G T ZNF334 Missense_Mutation p.F581L 0.15 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 20 45130672 45130672 T G ZNF334 Missense_Mutation p.S436R 0.24 tolerated(0.29) benign(0.011) TCGA-F5-6814-01 20 45130788 45130788 C A ZNF334 Missense_Mutation p.R397I 0.38 deleterious(0.04) probably_damaging(0.991) TCGA-F5-6814-01 20 45131639 45131639 C A ZNF334 Missense_Mutation p.E113D 0.47 tolerated(0.16) benign(0.021) TCGA-F5-6814-01 20 45916003 45916003 C T ZMYND8 Silent p.A258A 0.09 TCGA-F5-6814-01 20 46281286 46281286 A C NCOA3 Missense_Mutation p.E1361D 0.23 tolerated(1) benign(0.006) TCGA-F5-6814-01 20 4681035 4681035 T G PRNP 3'UTR 0.38 TCGA-F5-6814-01 20 4681428 4681428 C A PRNP 3'UTR 0.27 TCGA-F5-6814-01 20 4681910 4681910 T G PRNP 3'UTR 0.33 TCGA-F5-6814-01 20 4708460 4708460 C T PRND 3'UTR 0.33 TCGA-F5-6814-01 20 4708872 4708872 C T PRND 3'UTR 0.22 TCGA-F5-6814-01 20 47262467 47262467 T G PREX1 Missense_Mutation p.K1145T 0.23 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 20 47606114 47606114 G T ARFGEF2 Missense_Mutation p.A903S 0.24 deleterious(0) probably_damaging(0.935) TCGA-F5-6814-01 20 47632864 47632864 T G ARFGEF2 Missense_Mutation p.I1409M 0.18 deleterious(0.02) benign(0.311) TCGA-F5-6814-01 20 47634071 47634071 C A ARFGEF2 Nonsense_Mutation p.S1498* 0.17 TCGA-F5-6814-01 20 4768281 4768281 C T RASSF2 Missense_Mutation p.D271N 0.41 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 20 47733749 47733749 C T STAU1 Missense_Mutation p.E516K 0.34 tolerated(0.06) probably_damaging(0.995) TCGA-F5-6814-01 20 47734428 47734428 C T STAU1 Silent p.S465S 0.39 TCGA-F5-6814-01 20 47839516 47839516 A C DDX27 Missense_Mutation p.E119A 0.41 tolerated(0.06) benign(0.146) TCGA-F5-6814-01 20 47881369 47881369 G A ZNFX1 Missense_Mutation p.R679W 0.45 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 47989682 47989682 G A KCNB1 Silent p.S805S 0.37 TCGA-F5-6814-01 20 4850589 4850589 A T SLC23A2 Missense_Mutation p.S405T 0.32 deleterious(0.04) benign(0.386) TCGA-F5-6814-01 20 50769820 50769820 G A ZFP64 Missense_Mutation p.S304L 0.42 tolerated(0.06) benign(0.015) TCGA-F5-6814-01 20 5095984 5095984 A C PCNA Missense_Mutation p.M244R 0.43 tolerated(0.21) probably_damaging(0.913) TCGA-F5-6814-01 20 51872033 51872033 G T TSHZ2 Missense_Mutation p.G679V 0.23 deleterious(0.02) possibly_damaging(0.611) TCGA-F5-6814-01 20 52185694 52185694 T C ZNF217 3'UTR 0.19 TCGA-F5-6814-01 20 52193424 52193424 T G ZNF217 Missense_Mutation p.K627Q 0.45 tolerated(0.18) benign(0.062) TCGA-F5-6814-01 20 52561412 52561412 G T BCAS1 3'UTR 0.36 TCGA-F5-6814-01 20 52570152 52570152 G A BCAS1 Missense_Mutation p.S500L 0.09 deleterious(0.03) benign(0.035) TCGA-F5-6814-01 20 52789879 52789879 C T CYP24A1 Silent p.K80K 0.32 TCGA-F5-6814-01 20 53205028 53205028 G T DOK5 Nonsense_Mutation p.E61* 0.36 TCGA-F5-6814-01 20 53267116 53267116 G T DOK5 3'UTR 0.35 TCGA-F5-6814-01 20 54573767 54573767 G A CBLN4 Missense_Mutation p.A151V 0.16 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 20 54579014 54579014 C T CBLN4 Missense_Mutation p.A72T 0.27 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 20 54941214 54941214 C T FAM210B Silent p.F150F 0.44 TCGA-F5-6814-01 20 54948538 54948538 C A AURKA Missense_Mutation p.E260D 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 20 55071912 55071912 G A GCNT7 Silent p.F129F 0.12 TCGA-F5-6814-01 20 55072432 55072432 A C GCNT7 5'UTR 0.48 TCGA-F5-6814-01 20 55213045 55213045 G T TFAP2C Missense_Mutation p.E443D 0.35 tolerated(1) benign(0.412) TCGA-F5-6814-01 20 5574004 5574004 C T GPCPD1 Missense_Mutation p.R67H 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 56098294 56098294 C A CTCFL Missense_Mutation p.R195I 0.18 tolerated(0.13) benign(0.101) TCGA-F5-6814-01 20 56137280 56137280 C A PCK1 Missense_Mutation p.F126L 0.32 tolerated(1) benign(0.006) TCGA-F5-6814-01 20 56814323 56814323 G T PPP4R1L 3'UTR 0.33 TCGA-F5-6814-01 20 56821241 56821241 T G PPP4R1L Missense_Mutation p.T198P 0.19 tolerated(0.06) possibly_damaging(0.864) TCGA-F5-6814-01 20 57042610 57042610 C A APCDD1L Missense_Mutation p.G98V 0.47 tolerated(0.16) benign(0.066) TCGA-F5-6814-01 20 57415196 57415196 G A RP4-806M20.3 5'Flank 0.10 TCGA-F5-6814-01 20 57428971 57428971 C T GNAS Silent p.S217S 0.26 TCGA-F5-6814-01 20 57598608 57598608 G A TUBB1 Missense_Mutation p.R77Q 0.31 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-F5-6814-01 20 57829639 57829639 T G ZNF831 Missense_Mutation p.D1625E 0.13 tolerated(0.55) benign(0.146) TCGA-F5-6814-01 20 57829798 57829798 A C ZNF831 Nonstop_Mutation p.*1678Cext*14 0.10 TCGA-F5-6814-01 20 57897430 57897430 T G EDN3 Missense_Mutation p.N182K 0.26 tolerated(0.09) benign(0.002) TCGA-F5-6814-01 20 58318216 58318216 G A PHACTR3 Missense_Mutation p.R58Q 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 20 58411608 58411608 C A PHACTR3 Silent p.I459I 0.31 TCGA-F5-6814-01 20 58520521 58520521 G T FAM217B 3'UTR 0.20 TCGA-F5-6814-01 20 58520644 58520644 C A FAM217B 3'UTR 0.10 TCGA-F5-6814-01 20 58521247 58521247 G A FAM217B 3'UTR 0.41 TCGA-F5-6814-01 20 585304 585304 G A TCF15 Silent p.G177G 0.31 TCGA-F5-6814-01 20 58533818 58533818 C T CDH26 Silent p.L13L 0.49 TCGA-F5-6814-01 20 58567470 58567470 G A CDH26 Missense_Mutation p.V441I 0.14 tolerated(0.12) benign(0.13) TCGA-F5-6814-01 20 58606376 58606376 T C CDH26 Missense_Mutation p.Y347H 0.17 deleterious_low_confidence(0) possibly_damaging(0.617) TCGA-F5-6814-01 20 5904186 5904186 G A CHGB Missense_Mutation p.E466K 0.28 tolerated(0.07) benign(0.11) TCGA-F5-6814-01 20 6025206 6025206 C A LRRN4 Missense_Mutation p.K327N 0.28 tolerated(0.28) benign(0.009) TCGA-F5-6814-01 20 6031609 6031609 C A LRRN4 Missense_Mutation p.D226Y 0.27 deleterious(0) probably_damaging(0.91) TCGA-F5-6814-01 20 60574158 60574158 C T TAF4 Missense_Mutation p.D932N 0.40 possibly_damaging(0.666) TCGA-F5-6814-01 20 60575195 60575195 C A TAF4 Missense_Mutation p.K924N 0.09 possibly_damaging(0.833) TCGA-F5-6814-01 20 60699794 60699794 G A LSM14B Silent p.P83P 0.14 TCGA-F5-6814-01 20 60709476 60709476 T G LSM14B 3'UTR 0.17 TCGA-F5-6814-01 20 60888058 60888058 G T LAMA5 Missense_Mutation p.F2988L 0.30 benign(0.006) TCGA-F5-6814-01 20 60903441 60903441 C T LAMA5 Missense_Mutation p.R1503H 0.32 benign(0.086) TCGA-F5-6814-01 20 60909287 60909287 G A LAMA5 Silent p.F898F 0.34 TCGA-F5-6814-01 20 60927354 60927354 C T LAMA5 Missense_Mutation p.D211N 0.50 probably_damaging(0.97) TCGA-F5-6814-01 20 61341007 61341007 G A NTSR1 Missense_Mutation p.A150T 0.18 tolerated(0.52) possibly_damaging(0.811) TCGA-F5-6814-01 20 61476916 61476916 T A TCFL5 Intron 0.53 TCGA-F5-6814-01 20 61513394 61513394 G A DIDO1 Missense_Mutation p.S1305L 0.42 benign(0.17) TCGA-F5-6814-01 20 61542301 61542301 C T DIDO1 Missense_Mutation p.D222N 0.23 benign(0.036) TCGA-F5-6814-01 20 61572956 61572956 G T GID8 Missense_Mutation p.M34I 0.50 deleterious(0) benign(0.394) TCGA-F5-6814-01 20 61597917 61597917 G A SLC17A9 Missense_Mutation p.A368T 0.13 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 20 62059743 62059743 C T KCNQ2 Silent p.K398K 0.33 TCGA-F5-6814-01 20 62173518 62173518 C A SRMS Missense_Mutation p.G315V 0.16 deleterious(0.04) possibly_damaging(0.511) TCGA-F5-6814-01 20 62178761 62178761 A T SRMS Missense_Mutation p.I19N 0.32 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 20 62322268 62322268 G A RTEL1 Missense_Mutation p.E866K 0.10 deleterious(0.04) benign(0.117) TCGA-F5-6814-01 20 62333218 62333218 G A ARFRP1 Silent p.V127V 0.14 TCGA-F5-6814-01 20 62421476 62421476 G T ZBTB46 Missense_Mutation p.S212Y 0.17 deleterious(0.01) possibly_damaging(0.707) TCGA-F5-6814-01 20 62421511 62421511 A C ZBTB46 Missense_Mutation p.D200E 0.16 tolerated(0.32) benign(0.032) TCGA-F5-6814-01 20 62421739 62421739 G T ZBTB46 Missense_Mutation p.F124L 0.22 deleterious(0) possibly_damaging(0.866) TCGA-F5-6814-01 20 62576033 62576033 G A UCKL1 Missense_Mutation p.R237W 0.35 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 20 62593668 62593668 C A ZNF512B Missense_Mutation p.K741N 0.35 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 20 62597952 62597952 G T ZNF512B Silent p.I192I 0.38 TCGA-F5-6814-01 20 62737522 62737522 G A NPBWR2 Silent p.F221F 0.34 TCGA-F5-6814-01 20 62868707 62868707 G A MYT1 Silent p.S1019S 0.55 TCGA-F5-6814-01 20 62871154 62871154 G T MYT1 Missense_Mutation p.E1045D 0.18 possibly_damaging(0.76) TCGA-F5-6814-01 20 62871685 62871685 G A MYT1 Missense_Mutation p.E1084K 0.28 probably_damaging(0.995) TCGA-F5-6814-01 20 9496734 9496734 T C LAMP5 Missense_Mutation p.F109L 0.13 tolerated(0.64) benign(0.077) TCGA-F5-6814-01 20 9520098 9520098 G A PAK7 3'UTR 0.42 TCGA-F5-6814-01 20 9525137 9525137 T G PAK7 Missense_Mutation p.K583T 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 20 9546657 9546657 G A PAK7 Silent p.I455I 0.17 TCGA-F5-6814-01 21 10906871 10906871 A C TPTE 3'UTR 0.18 TCGA-F5-6814-01 21 10934955 10934955 G A TPTE Nonsense_Mutation p.R280* 0.15 TCGA-F5-6814-01 21 10942991 10942991 A C TPTE Missense_Mutation p.L199R 0.17 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 21 10943004 10943004 G A TPTE Nonsense_Mutation p.R195* 0.07 TCGA-F5-6814-01 21 10952941 10952941 G A TPTE Missense_Mutation p.H86Y 0.19 tolerated(0.94) benign(0.002) TCGA-F5-6814-01 21 10952948 10952948 T G TPTE Missense_Mutation p.K83N 0.06 tolerated(0.18) possibly_damaging(0.587) TCGA-F5-6814-01 21 10998330 10998330 C A TPTE RNA 0.15 TCGA-F5-6814-01 21 11020842 11020842 A T BAGE2 RNA 0.07 TCGA-F5-6814-01 21 11038753 11038753 G T BAGE2 RNA 0.13 TCGA-F5-6814-01 21 11047480 11047480 C A BAGE2 Splice_Site 0.06 TCGA-F5-6814-01 21 14417521 14417521 G T RNU6-614P 5'Flank 0.16 TCGA-F5-6814-01 21 15013690 15013690 G T POTED Nonsense_Mutation p.E520* 0.64 TCGA-F5-6814-01 21 15013790 15013790 A C POTED Missense_Mutation p.K553T 0.13 deleterious(0.02) probably_damaging(0.954) TCGA-F5-6814-01 21 15517072 15517072 T G LIPI Missense_Mutation p.Q410H 0.35 deleterious(0.05) possibly_damaging(0.849) TCGA-F5-6814-01 21 15748119 15748119 A G HSPA13 Missense_Mutation p.I201T 0.18 deleterious(0) possibly_damaging(0.709) TCGA-F5-6814-01 21 16339835 16339835 T C NRIP1 Missense_Mutation p.T227A 0.38 tolerated(0.56) benign(0.003) TCGA-F5-6814-01 21 17163933 17163933 G A USP25 Missense_Mutation p.V169I 0.28 deleterious(0) benign(0.312) TCGA-F5-6814-01 21 17163944 17163944 G T USP25 Missense_Mutation p.K172N 0.37 deleterious(0) possibly_damaging(0.728) TCGA-F5-6814-01 21 17191022 17191022 A C USP25 Missense_Mutation p.K313Q 0.50 tolerated(0.35) possibly_damaging(0.573) TCGA-F5-6814-01 21 17246810 17246810 G T USP25 Nonsense_Mutation p.E922* 0.26 TCGA-F5-6814-01 21 18924244 18924244 A G CXADR Missense_Mutation p.N130D 0.27 deleterious(0.01) benign(0.151) TCGA-F5-6814-01 21 18966407 18966407 G A BTG3 3'UTR 0.15 TCGA-F5-6814-01 21 19770248 19770248 G T TMPRSS15 Missense_Mutation p.L98I 0.11 tolerated(0.25) benign(0.433) TCGA-F5-6814-01 21 19770252 19770252 G T TMPRSS15 Silent p.I96I 0.35 TCGA-F5-6814-01 21 19775917 19775917 G T TMPRSS15 Missense_Mutation p.S8Y 0.35 tolerated(0.06) benign(0.211) TCGA-F5-6814-01 21 22710781 22710781 C T NCAM2 Missense_Mutation p.A324V 0.20 deleterious(0.03) probably_damaging(0.936) TCGA-F5-6814-01 21 22782621 22782621 C G NCAM2 Missense_Mutation p.T408R 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-F5-6814-01 21 22910258 22910258 G T NCAM2 Nonsense_Mutation p.E832* 0.38 TCGA-F5-6814-01 21 26969717 26969717 G A MRPL39 Missense_Mutation p.R200C 0.32 tolerated(0.05) benign(0.031) TCGA-F5-6814-01 21 27284094 27284094 G T APP Missense_Mutation p.S623Y 0.46 deleterious(0.05) possibly_damaging(0.629) TCGA-F5-6814-01 21 27840818 27840818 G T CYYR1 3'UTR 0.27 TCGA-F5-6814-01 21 28296617 28296617 A C ADAMTS5 Missense_Mutation p.F850V 0.26 deleterious(0) possibly_damaging(0.622) TCGA-F5-6814-01 21 28315736 28315736 A C ADAMTS5 Silent p.T456T 0.48 TCGA-F5-6814-01 21 30302769 30302769 C A LTN1 3'UTR 0.17 TCGA-F5-6814-01 21 30304789 30304789 T G LTN1 Intron 0.20 TCGA-F5-6814-01 21 30325653 30325653 T C LTN1 Missense_Mutation p.N1088S 0.28 tolerated(0.27) benign(0.053) TCGA-F5-6814-01 21 30343625 30343625 C T LTN1 Missense_Mutation p.E364K 0.24 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 21 30693685 30693685 G A BACH1 Silent p.R28R 0.44 TCGA-F5-6814-01 21 30698831 30698831 A C BACH1 Missense_Mutation p.K229T 0.39 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 21 30701941 30701941 G A BACH1 Missense_Mutation p.R568K 0.29 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 21 30715184 30715184 A G BACH1 3'UTR 0.39 TCGA-F5-6814-01 21 30925905 30925905 G A GRIK1 Nonsense_Mutation p.R910* 0.34 TCGA-F5-6814-01 21 30969947 30969947 A G GRIK1-AS2 3'UTR 0.35 TCGA-F5-6814-01 21 31023458 31023458 G T GRIK1 Missense_Mutation p.L312I 0.36 tolerated(0.08) possibly_damaging(0.646) TCGA-F5-6814-01 21 31538308 31538308 G A CLDN17 Nonsense_Mutation p.R210* 0.20 TCGA-F5-6814-01 21 31654771 31654771 C A KRTAP24-1 Missense_Mutation p.K160N 0.29 tolerated(0.31) probably_damaging(0.937) TCGA-F5-6814-01 21 31720767 31720767 G T KRTAP23-1 Missense_Mutation p.S53Y 0.30 unknown(0) TCGA-F5-6814-01 21 31797759 31797759 A G KRTAP13-3 Missense_Mutation p.F158L 0.18 tolerated(0.35) benign(0.005) TCGA-F5-6814-01 21 31797829 31797829 G T KRTAP13-3 Silent p.I134I 0.29 TCGA-F5-6814-01 21 31802901 31802901 A C KRTAP13-4 Missense_Mutation p.Y103S 0.18 deleterious(0.04) possibly_damaging(0.817) TCGA-F5-6814-01 21 32513495 32513495 C A TIAM1 Nonsense_Mutation p.E1239* 0.31 TCGA-F5-6814-01 21 32585759 32585759 C A TIAM1 Missense_Mutation p.K724N 0.30 deleterious(0.03) possibly_damaging(0.849) TCGA-F5-6814-01 21 32639039 32639039 C A TIAM1 Missense_Mutation p.D84Y 0.09 deleterious_low_confidence(0) possibly_damaging(0.825) TCGA-F5-6814-01 21 33065732 33065732 C T SCAF4 Missense_Mutation p.R463Q 0.26 benign(0.238) TCGA-F5-6814-01 21 33074591 33074591 T C SCAF4 Silent p.A141A 0.07 TCGA-F5-6814-01 21 33074623 33074623 G T SCAF4 Missense_Mutation p.L131I 0.31 probably_damaging(0.967) TCGA-F5-6814-01 21 33340634 33340634 C T HUNK Missense_Mutation p.A316V 0.18 deleterious(0.03) probably_damaging(0.981) TCGA-F5-6814-01 21 33689316 33689316 C T URB1 Missense_Mutation p.R2032Q 0.18 tolerated(0.22) benign(0.11) TCGA-F5-6814-01 21 33711065 33711065 C T URB1 Silent p.P1487P 0.40 TCGA-F5-6814-01 21 34038292 34038292 T G SYNJ1 Missense_Mutation p.E741D 0.23 tolerated(0.24) benign(0.028) TCGA-F5-6814-01 21 34038299 34038299 C A SYNJ1 Missense_Mutation p.R739I 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 21 34444636 34444636 G A OLIG1 3'UTR 0.36 TCGA-F5-6814-01 21 34537971 34537971 C A C21orf54 3'UTR 0.22 TCGA-F5-6814-01 21 34632910 34632910 G T IFNAR2 Nonsense_Mutation p.E240* 0.13 TCGA-F5-6814-01 21 34655474 34655474 C T IL10RB Nonsense_Mutation p.R192* 0.40 TCGA-F5-6814-01 21 34841211 34841211 A C TMEM50B 5'UTR 0.48 TCGA-F5-6814-01 21 34861416 34861416 A G DNAJC28 Silent p.I95I 0.40 TCGA-F5-6814-01 21 34921872 34921872 A C SON Missense_Mutation p.K112T 0.24 benign(0.403) TCGA-F5-6814-01 21 34921957 34921957 G A SON Silent p.T140T 0.43 TCGA-F5-6814-01 21 34923166 34923166 G A SON Silent p.T543T 0.26 TCGA-F5-6814-01 21 34926690 34926690 A G SON Missense_Mutation p.D1718G 0.12 possibly_damaging(0.539) TCGA-F5-6814-01 21 34950587 34950587 G T DONSON 3'UTR 0.35 TCGA-F5-6814-01 21 34967599 34967599 A C CRYZL1 Intron 0.67 TCGA-F5-6814-01 21 35140122 35140122 G T ITSN1 Missense_Mutation p.K344N 0.37 tolerated(0.11) unknown(0) TCGA-F5-6814-01 21 35144464 35144464 A C ITSN1 Missense_Mutation p.E381A 0.12 deleterious(0.04) unknown(0) TCGA-F5-6814-01 21 35147109 35147109 G T ITSN1 Missense_Mutation p.R461I 0.19 deleterious(0) benign(0.017) TCGA-F5-6814-01 21 35257801 35257801 C T ITSN1 Silent p.I1606I 0.24 TCGA-F5-6814-01 21 35260526 35260526 G A ITSN1 Silent p.T1696T 0.14 TCGA-F5-6814-01 21 35471489 35471489 G T SLC5A3 3'UTR 0.29 TCGA-F5-6814-01 21 35472528 35472528 G T SLC5A3 3'UTR 0.33 TCGA-F5-6814-01 21 35475187 35475187 C T SLC5A3 3'UTR 0.17 TCGA-F5-6814-01 21 35476104 35476104 G T SLC5A3 3'UTR 0.49 TCGA-F5-6814-01 21 35821387 35821387 G T KCNE1 3'UTR 0.41 TCGA-F5-6814-01 21 35890299 35890299 G A RCAN1 3'UTR 0.46 TCGA-F5-6814-01 21 36171607 36171607 G A RUNX1 Nonsense_Mutation p.R320* 0.42 TCGA-F5-6814-01 21 37093076 37093076 C A MIR802 RNA 0.52 TCGA-F5-6814-01 21 37431223 37431223 C A SETD4 5'UTR 0.82 TCGA-F5-6814-01 21 37537064 37537064 T G DOPEY2 Missense_Mutation p.D11E 0.37 tolerated(0.05) probably_damaging(0.996) TCGA-F5-6814-01 21 37602821 37602821 C T DOPEY2 Missense_Mutation p.S580L 0.58 tolerated(0.19) benign(0.001) TCGA-F5-6814-01 21 37626108 37626108 C T DOPEY2 Silent p.V1720V 0.36 TCGA-F5-6814-01 21 37741371 37741371 A G MORC3 Missense_Mutation p.K569E 0.33 tolerated(0.85) benign(0.002) TCGA-F5-6814-01 21 38459664 38459664 A C TTC3 Missense_Mutation p.D36A 0.31 deleterious(0.01) benign(0.027) TCGA-F5-6814-01 21 38460555 38460555 G A TTC3 Missense_Mutation p.D83N 0.17 tolerated(0.45) benign(0.194) TCGA-F5-6814-01 21 38507815 38507815 G T TTC3 Splice_Site p.X526_splice 0.20 TCGA-F5-6814-01 21 38525606 38525606 A C TTC3 Intron 0.10 TCGA-F5-6814-01 21 38852965 38852965 G T DYRK1A Missense_Mutation p.R118I 0.23 deleterious(0) probably_damaging(0.943) TCGA-F5-6814-01 21 39772513 39772513 C A ERG Missense_Mutation p.R250I 0.50 deleterious(0.02) possibly_damaging(0.899) TCGA-F5-6814-01 21 39775426 39775426 A G ERG Splice_Site p.X205_splice 0.28 TCGA-F5-6814-01 21 40604198 40604198 G A BRWD1 Nonsense_Mutation p.R969* 0.45 TCGA-F5-6814-01 21 40714972 40714972 A C HMGN1 3'UTR 0.44 TCGA-F5-6814-01 21 40715021 40715021 G T HMGN1 3'UTR 0.10 TCGA-F5-6814-01 21 40778361 40778361 A G LCA5L Missense_Mutation p.V487A 0.56 tolerated(0.82) benign(0.009) TCGA-F5-6814-01 21 40800375 40800375 G T LCA5L Missense_Mutation p.F15L 0.38 tolerated(0.25) benign(0.011) TCGA-F5-6814-01 21 41143007 41143007 G A IGSF5 Missense_Mutation p.D195N 0.54 tolerated(0.15) benign(0.351) TCGA-F5-6814-01 21 41384864 41384864 T G DSCAM 3'UTR 0.33 TCGA-F5-6814-01 21 41710235 41710235 G A DSCAM Missense_Mutation p.R526C 0.27 tolerated(0.06) probably_damaging(0.992) TCGA-F5-6814-01 21 43411637 43411637 G A ZBTB21 Silent p.F856F 0.23 TCGA-F5-6814-01 21 43412608 43412608 C T ZBTB21 Missense_Mutation p.E533K 0.34 tolerated(0.06) possibly_damaging(0.53) TCGA-F5-6814-01 21 43412898 43412898 G A ZBTB21 Missense_Mutation p.P436L 0.28 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 21 43413610 43413610 G T ZBTB21 Missense_Mutation p.H199N 0.30 tolerated(0.09) benign(0.006) TCGA-F5-6814-01 21 43536042 43536042 C T UMODL1 Missense_Mutation p.R936C 0.32 tolerated(0.22) possibly_damaging(0.835) TCGA-F5-6814-01 21 43539283 43539283 A C UMODL1 Missense_Mutation p.E974D 0.17 tolerated(0.56) benign(0.388) TCGA-F5-6814-01 21 43800274 43800274 C T TMPRSS3 Missense_Mutation p.D334N 0.11 tolerated(0.17) benign(0.013) TCGA-F5-6814-01 21 44323932 44323932 A C NDUFV3 Missense_Mutation p.K270N 0.15 tolerated(0.2) possibly_damaging(0.526) TCGA-F5-6814-01 21 44430320 44430320 G T PKNOX1 Nonsense_Mutation p.E113* 0.29 TCGA-F5-6814-01 21 44488638 44488638 G A CBS Silent p.F99F 0.25 TCGA-F5-6814-01 21 44515843 44515843 G A U2AF1 Silent p.S70S 0.28 TCGA-F5-6814-01 21 44590650 44590650 C A CRYAA Missense_Mutation p.F71L 0.21 deleterious(0) possibly_damaging(0.827) TCGA-F5-6814-01 21 44839772 44839772 C T SIK1 Silent p.P362P 0.18 TCGA-F5-6814-01 21 45094523 45094523 C T RRP1B Missense_Mutation p.R122C 0.50 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 21 45402199 45402199 C T AGPAT3 Missense_Mutation p.R353C 0.30 deleterious(0) possibly_damaging(0.856) TCGA-F5-6814-01 21 45941937 45941937 G A TSPEAR Silent p.F465F 0.18 TCGA-F5-6814-01 21 45960005 45960005 G A KRTAP10-1 Missense_Mutation p.S10F 0.12 deleterious(0) possibly_damaging(0.485) TCGA-F5-6814-01 21 46067550 46067550 A C KRTAP10-11 3'UTR 0.46 TCGA-F5-6814-01 21 46067554 46067554 C A KRTAP10-11 3'UTR 0.36 TCGA-F5-6814-01 21 46101698 46101698 A G KRTAP12-1 3'UTR 0.23 TCGA-F5-6814-01 21 46323368 46323368 G T ITGB2 Nonsense_Mutation p.Y137* 0.30 TCGA-F5-6814-01 21 46328090 46328090 G T ITGB2 Intron 0.33 TCGA-F5-6814-01 21 46386954 46386954 G A FAM207A Missense_Mutation p.E120K 0.33 deleterious(0.01) probably_damaging(0.961) TCGA-F5-6814-01 21 46596491 46596491 C A ADARB1 Missense_Mutation p.A292D 0.27 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 21 46914465 46914465 C T COL18A1 Missense_Mutation p.P967S 0.45 probably_damaging(0.999) TCGA-F5-6814-01 21 47421901 47421901 T C COL6A1 Silent p.G661G 0.12 TCGA-F5-6814-01 21 47423557 47423557 C A COL6A1 Missense_Mutation p.A906D 0.28 tolerated(0.66) benign(0.016) TCGA-F5-6814-01 21 47423583 47423583 G A COL6A1 Missense_Mutation p.D915N 0.29 tolerated(0.18) benign(0.145) TCGA-F5-6814-01 21 47570423 47570423 T G FTCD Missense_Mutation p.K218T 0.14 tolerated(0.31) possibly_damaging(0.627) TCGA-F5-6814-01 21 47581448 47581448 C T SPATC1L Missense_Mutation p.D290N 0.58 tolerated(0.13) possibly_damaging(0.486) TCGA-F5-6814-01 21 47786919 47786919 G A PCNT Silent p.T1010T 0.29 TCGA-F5-6814-01 21 47831534 47831534 C T PCNT Silent p.V1849V 0.19 TCGA-F5-6814-01 21 47831564 47831564 C T PCNT Silent p.F1859F 0.17 TCGA-F5-6814-01 21 48019410 48019410 T C S100B Missense_Mutation p.K49E 0.39 deleterious(0.01) benign(0.171) TCGA-F5-6814-01 21 48081736 48081736 G A PRMT2 Missense_Mutation p.D329N 0.21 tolerated(0.51) benign(0.026) TCGA-F5-6814-01 22 16256617 16256617 C A POTEH 3'UTR 0.06 TCGA-F5-6814-01 22 17071784 17071784 G T CCT8L2 Missense_Mutation p.L553I 0.10 tolerated_low_confidence(0.21) benign(0.005) TCGA-F5-6814-01 22 17073536 17073536 G T CCT8L2 5'UTR 0.29 TCGA-F5-6814-01 22 17450927 17450927 T C GAB4 Silent p.A281A 0.16 TCGA-F5-6814-01 22 17472773 17472773 C A GAB4 Missense_Mutation p.E156D 0.31 tolerated(0.16) possibly_damaging(0.636) TCGA-F5-6814-01 22 18020142 18020142 C T CECR2 Missense_Mutation p.R492W 0.32 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 22 18022043 18022043 G A CECR2 Silent p.R716R 0.29 TCGA-F5-6814-01 22 18324615 18324615 G A MICAL3 Missense_Mutation p.T925M 0.62 possibly_damaging(0.609) TCGA-F5-6814-01 22 18347588 18347588 C T MICAL3 Intron 0.24 TCGA-F5-6814-01 22 18387407 18387407 C T MICAL3 Missense_Mutation p.D155N 0.34 probably_damaging(0.995) TCGA-F5-6814-01 22 18609247 18609247 G T TUBA8 Nonsense_Mutation p.E168* 0.11 TCGA-F5-6814-01 22 19119042 19119042 G A TSSK2 Missense_Mutation p.D44N 0.30 tolerated(0.39) benign(0.047) TCGA-F5-6814-01 22 19195713 19195713 G A CLTCL1 Missense_Mutation p.S1184F 0.26 deleterious(0.02) possibly_damaging(0.857) TCGA-F5-6814-01 22 19195746 19195746 A C CLTCL1 Missense_Mutation p.L1173R 0.29 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 22 19213020 19213020 G A CLTCL1 Missense_Mutation p.T695M 0.17 deleterious(0.03) probably_damaging(0.991) TCGA-F5-6814-01 22 19839175 19839175 G A C22orf29 Missense_Mutation p.P204S 0.22 tolerated(0.06) probably_damaging(0.964) TCGA-F5-6814-01 22 20113855 20113855 G T RANBP1 Nonsense_Mutation p.E157* 0.45 TCGA-F5-6814-01 22 20394516 20394516 T G PI4KAP1 Intron 0.19 TCGA-F5-6814-01 22 20458418 20458418 C A RIMBP3 Missense_Mutation p.D962Y 0.15 deleterious(0) possibly_damaging(0.673) TCGA-F5-6814-01 22 20784755 20784755 G A SCARF2 Missense_Mutation p.S388L 0.50 deleterious(0) possibly_damaging(0.817) TCGA-F5-6814-01 22 20791875 20791875 G A SCARF2 Missense_Mutation p.A56V 0.50 tolerated(0.32) benign(0.028) TCGA-F5-6814-01 22 21044326 21044326 C A POM121L4P RNA 0.62 TCGA-F5-6814-01 22 21188860 21188860 C T PI4KA Silent p.R119R 0.16 TCGA-F5-6814-01 22 21242221 21242221 A G SNAP29 3'UTR 0.29 TCGA-F5-6814-01 22 21304053 21304053 G A CRKL Missense_Mutation p.E278K 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6814-01 22 21348031 21348031 C T LZTR1 Silent p.F447F 0.48 TCGA-F5-6814-01 22 21357310 21357310 G A AC002472.1 3'Flank 0.35 TCGA-F5-6814-01 22 21363236 21363236 G A AC002472.1 5'Flank 0.15 TCGA-F5-6814-01 22 21363783 21363783 C T AC002472.1 5'Flank 0.32 TCGA-F5-6814-01 22 21742739 21742739 C A RIMBP3B Missense_Mutation p.S1531Y 0.20 deleterious(0.05) benign(0) TCGA-F5-6814-01 22 22516875 22516875 G A IGLV4-60 Missense_Mutation p.A55T 0.33 tolerated(0.39) benign(0.021) TCGA-F5-6814-01 22 22682025 22682025 C T IGLV1-50 Silent p.I69I 0.32 TCGA-F5-6814-01 22 22707598 22707598 G T IGLV5-48 Missense_Mutation p.E62D 0.35 deleterious(0) benign(0.055) TCGA-F5-6814-01 22 22906137 22906137 G T LL22NC03-63E9.3 Missense_Mutation p.R72S 0.21 unknown(0) TCGA-F5-6814-01 22 23029638 23029638 C A IGLV3-25 Missense_Mutation p.F80L 0.31 deleterious(0.01) probably_damaging(0.927) TCGA-F5-6814-01 22 23154575 23154575 A C IGLV3-10 Missense_Mutation p.K48N 0.36 tolerated(0.39) benign(0.014) TCGA-F5-6814-01 22 23603667 23603667 C A BCR Silent p.L564L 0.28 TCGA-F5-6814-01 22 23982578 23982578 G A GUSBP11 Intron 0.22 TCGA-F5-6814-01 22 24034627 24034627 C A RGL4 Silent p.L95L 0.25 TCGA-F5-6814-01 22 24199133 24199133 C A SLC2A11 5'UTR 0.24 TCGA-F5-6814-01 22 24439543 24439543 A G CABIN1 Missense_Mutation p.T175A 0.19 tolerated(0.16) possibly_damaging(0.764) TCGA-F5-6814-01 22 24447401 24447401 G A CABIN1 Silent p.P257P 0.09 TCGA-F5-6814-01 22 24509582 24509582 G A CABIN1 Silent p.T1389T 0.32 TCGA-F5-6814-01 22 24919594 24919594 G T UPB1 Missense_Mutation p.Q308H 0.28 tolerated(0.34) benign(0) TCGA-F5-6814-01 22 24968082 24968082 A C SNRPD3 3'UTR 0.07 TCGA-F5-6814-01 22 25270400 25270400 G A SGSM1 Missense_Mutation p.G437D 0.21 tolerated(0.66) benign(0.006) TCGA-F5-6814-01 22 25580961 25580961 G A KIAA1671 Silent p.R1739R 0.24 TCGA-F5-6814-01 22 26157076 26157076 G A MYO18B Missense_Mutation p.R6H 0.25 deleterious(0) possibly_damaging(0.857) TCGA-F5-6814-01 22 26165318 26165318 C T MYO18B Missense_Mutation p.R479W 0.41 deleterious(0) benign(0.002) TCGA-F5-6814-01 22 26166947 26166947 A G MYO18B Missense_Mutation p.H563R 0.27 deleterious(0) possibly_damaging(0.784) TCGA-F5-6814-01 22 26747114 26747114 A G SEZ6L Missense_Mutation p.N835S 0.34 tolerated(0.11) benign(0.021) TCGA-F5-6814-01 22 26892185 26892185 G A TFIP11 Missense_Mutation p.S568F 0.31 tolerated(0.16) possibly_damaging(0.639) TCGA-F5-6814-01 22 27008142 27008142 C T CRYBB1 Missense_Mutation p.E65K 0.48 deleterious(0) probably_damaging(0.963) TCGA-F5-6814-01 22 28379387 28379387 C T TTC28 Missense_Mutation p.A2090T 0.41 tolerated_low_confidence(0.22) benign(0.002) TCGA-F5-6814-01 22 28386793 28386793 T G TTC28 Missense_Mutation p.K1854T 0.28 deleterious(0.03) benign(0.164) TCGA-F5-6814-01 22 28397437 28397437 G T TTC28 Silent p.S1441S 0.40 TCGA-F5-6814-01 22 28426276 28426276 G T TTC28 Silent p.L1337L 0.12 TCGA-F5-6814-01 22 29025784 29025784 C A TTC28 Missense_Mutation p.R46I 0.25 tolerated_low_confidence(0.12) benign(0.04) TCGA-F5-6814-01 22 29121280 29121280 C A CHEK2 Missense_Mutation p.R175I 0.10 deleterious(0.02) benign(0.142) TCGA-F5-6814-01 22 29456518 29456518 T G C22orf31 Missense_Mutation p.K106T 0.23 deleterious(0) possibly_damaging(0.643) TCGA-F5-6814-01 22 29533449 29533449 G A KREMEN1 Missense_Mutation p.A251T 0.50 tolerated(0.08) possibly_damaging(0.869) TCGA-F5-6814-01 22 29537988 29537988 C T KREMEN1 Missense_Mutation p.S439L 0.28 deleterious_low_confidence(0.01) benign(0.294) TCGA-F5-6814-01 22 29833805 29833805 G A RFPL1 5'Flank 0.44 TCGA-F5-6814-01 22 29835201 29835201 A C RFPL1 Intron 0.43 TCGA-F5-6814-01 22 29913292 29913292 C T THOC5 Missense_Mutation p.R518H 0.17 tolerated(0.5) benign(0) TCGA-F5-6814-01 22 30209520 30209520 G A ASCC2 Silent p.D244D 0.21 TCGA-F5-6814-01 22 30374478 30374478 C A MTMR3 Silent p.I17I 0.34 TCGA-F5-6814-01 22 30572089 30572089 C T HORMAD2 Missense_Mutation p.S286F 0.30 tolerated(0.71) benign(0.004) TCGA-F5-6814-01 22 31583191 31583191 C T RNF185 Silent p.F37F 0.21 TCGA-F5-6814-01 22 31679258 31679258 C A PIK3IP1 Nonsense_Mutation p.E202* 0.37 TCGA-F5-6814-01 22 31687243 31687243 T C PIK3IP1 Missense_Mutation p.Q37R 0.39 tolerated(0.11) benign(0.015) TCGA-F5-6814-01 22 31799045 31799045 G A DRG1 Missense_Mutation p.R66Q 0.06 deleterious(0) probably_damaging(0.912) TCGA-F5-6814-01 22 31904276 31904276 G T SFI1 Missense_Mutation p.K2N 0.32 deleterious_low_confidence(0) benign(0.165) TCGA-F5-6814-01 22 31942864 31942864 G A SFI1 Missense_Mutation p.R119Q 0.41 tolerated(0.16) benign(0.006) TCGA-F5-6814-01 22 32109606 32109606 G T PRR14L Missense_Mutation p.R1407S 0.12 deleterious(0.05) benign(0) TCGA-F5-6814-01 22 32111448 32111448 T G PRR14L Missense_Mutation p.K793Q 0.32 tolerated(0.09) benign(0.165) TCGA-F5-6814-01 22 32113020 32113020 C A PRR14L Nonsense_Mutation p.E269* 0.13 TCGA-F5-6814-01 22 32330047 32330047 A C C22orf24 3'UTR 0.24 TCGA-F5-6814-01 22 32554982 32554982 T C C22orf42 Missense_Mutation p.K74R 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.486) TCGA-F5-6814-01 22 32588982 32588982 G A RFPL2 Missense_Mutation p.R155W 0.36 tolerated(0.21) benign(0.008) TCGA-F5-6814-01 22 32590385 32590385 T C RFPL2 Missense_Mutation p.D71G 0.20 tolerated_low_confidence(0.06) benign(0.03) TCGA-F5-6814-01 22 32643399 32643399 G T SLC5A4 Missense_Mutation p.S159Y 0.15 deleterious(0) probably_damaging(0.933) TCGA-F5-6814-01 22 32841915 32841915 C T BPIFC Missense_Mutation p.R148Q 0.21 tolerated(0.28) benign(0.065) TCGA-F5-6814-01 22 32881113 32881113 A C FBXO7 Missense_Mutation p.K235T 0.12 deleterious(0) benign(0.386) TCGA-F5-6814-01 22 35661203 35661203 C T HMGXB4 Silent p.F274F 0.41 TCGA-F5-6814-01 22 35730360 35730360 T C TOM1 Missense_Mutation p.L356P 0.29 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 22 35789644 35789644 C A HMOX1 3'UTR 0.20 TCGA-F5-6814-01 22 36541643 36541643 C A APOL3 Missense_Mutation p.K76N 0.26 tolerated(0.25) probably_damaging(0.95) TCGA-F5-6814-01 22 37154332 37154332 G A IFT27 3'UTR 0.44 TCGA-F5-6814-01 22 37273712 37273712 C T NCF4 3'UTR 0.22 TCGA-F5-6814-01 22 37326808 37326808 C T CSF2RB Silent p.H316H 0.33 TCGA-F5-6814-01 22 37328890 37328890 G A CSF2RB Missense_Mutation p.E366K 0.45 tolerated(0.96) benign(0.004) TCGA-F5-6814-01 22 37387167 37387167 T C TEX33 3'UTR 0.09 TCGA-F5-6814-01 22 37397962 37397962 C T TEX33 Silent p.T135T 0.42 TCGA-F5-6814-01 22 37627338 37627338 C A RAC2 Missense_Mutation p.E127D 0.26 tolerated_low_confidence(0.11) probably_damaging(0.917) TCGA-F5-6814-01 22 38119627 38119627 G T TRIOBP Missense_Mutation p.R355I 0.09 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-F5-6814-01 22 38121532 38121532 G A TRIOBP Missense_Mutation p.R990Q 0.22 tolerated_low_confidence(0.14) benign(0.011) TCGA-F5-6814-01 22 38165359 38165359 G A TRIOBP Missense_Mutation p.E2276K 0.42 tolerated(0.08) probably_damaging(0.991) TCGA-F5-6814-01 22 38219495 38219495 T G GALR3 Missense_Mutation p.F28V 0.49 deleterious(0) probably_damaging(0.956) TCGA-F5-6814-01 22 38340166 38340166 C T C22orf23 3'UTR 0.47 TCGA-F5-6814-01 22 38382308 38382308 C A SOX10 5'Flank 0.38 TCGA-F5-6814-01 22 38823343 38823343 G A KCNJ4 Silent p.I265I 0.35 TCGA-F5-6814-01 22 38864286 38864286 G T KDELR3 Missense_Mutation p.M16I 0.41 tolerated(1) benign(0.001) TCGA-F5-6814-01 22 38875656 38875656 A C KDELR3 Missense_Mutation p.K84T 0.32 tolerated(0.34) benign(0.037) TCGA-F5-6814-01 22 39148667 39148667 G T SUN2 5'UTR 0.47 TCGA-F5-6814-01 22 39176990 39176990 G A DNAL4 Missense_Mutation p.R32C 0.16 tolerated(0.1) benign(0.035) TCGA-F5-6814-01 22 39267521 39267521 C A CBX6 Missense_Mutation p.K70N 0.40 deleterious(0) benign(0.09) TCGA-F5-6814-01 22 39530576 39530576 C T CBX7 Missense_Mutation p.R143Q 0.27 tolerated(0.1) benign(0.118) TCGA-F5-6814-01 22 39715666 39715666 T G RPL3 5'UTR 0.43 TCGA-F5-6814-01 22 39884996 39884996 C T MGAT3 3'UTR 0.26 TCGA-F5-6814-01 22 40037146 40037146 A C CACNA1I Missense_Mutation p.N339H 0.17 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 22 40069076 40069076 G A CACNA1I Missense_Mutation p.R1591H 0.18 deleterious(0) possibly_damaging(0.812) TCGA-F5-6814-01 22 40283490 40283490 T G ENTHD1 Missense_Mutation p.K88T 0.35 deleterious(0.01) possibly_damaging(0.715) TCGA-F5-6814-01 22 40362114 40362114 C T GRAP2 Silent p.I137I 0.39 TCGA-F5-6814-01 22 40364247 40364247 C T GRAP2 Nonsense_Mutation p.R221* 0.38 TCGA-F5-6814-01 22 40662371 40662371 C T TNRC6B Nonsense_Mutation p.R713* 0.43 TCGA-F5-6814-01 22 41257555 41257555 C A DNAJB7 Missense_Mutation p.E148D 0.38 tolerated(0.44) benign(0.214) TCGA-F5-6814-01 22 41488961 41488961 T C EP300 5'UTR 0.31 TCGA-F5-6814-01 22 41513193 41513193 T G EP300 Missense_Mutation p.F33V 0.39 unknown(0) TCGA-F5-6814-01 22 41744097 41744097 C A ZC3H7B Silent p.I564I 0.26 TCGA-F5-6814-01 22 41832759 41832759 T C TOB2 Silent p.A197A 0.31 TCGA-F5-6814-01 22 41922254 41922254 T G POLR3H 3'UTR 0.39 TCGA-F5-6814-01 22 42119962 42119962 T C MEI1 Missense_Mutation p.L250P 0.28 deleterious(0) possibly_damaging(0.628) TCGA-F5-6814-01 22 42141949 42141949 C T MEI1 Silent p.S533S 0.35 TCGA-F5-6814-01 22 42607313 42607313 G A TCF20 Silent p.L1333L 0.36 TCGA-F5-6814-01 22 42610130 42610130 C A TCF20 Missense_Mutation p.E394D 0.34 benign(0.047) TCGA-F5-6814-01 22 43203104 43203104 G A ARFGAP3 Silent p.F462F 0.21 TCGA-F5-6814-01 22 43284694 43284694 C A PACSIN2 Missense_Mutation p.K188N 0.20 deleterious(0) probably_damaging(0.963) TCGA-F5-6814-01 22 43460241 43460241 C T TTLL1 Missense_Mutation p.R198H 0.33 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 22 43529472 43529472 C A MCAT Missense_Mutation p.K250N 0.50 tolerated(0.08) possibly_damaging(0.727) TCGA-F5-6814-01 22 43599955 43599955 G A SCUBE1 3'UTR 0.27 TCGA-F5-6814-01 22 43634640 43634640 G A SCUBE1 Intron 0.40 TCGA-F5-6814-01 22 43634812 43634812 G T SCUBE1 Intron 0.35 TCGA-F5-6814-01 22 44022452 44022452 G A EFCAB6 Silent p.D780D 0.35 TCGA-F5-6814-01 22 44027987 44027987 G A EFCAB6 Missense_Mutation p.R744W 0.32 deleterious(0.02) possibly_damaging(0.794) TCGA-F5-6814-01 22 44063141 44063141 G A EFCAB6 Missense_Mutation p.T609M 0.34 tolerated(0.11) benign(0.085) TCGA-F5-6814-01 22 44067916 44067916 C T EFCAB6 Missense_Mutation p.R526Q 0.31 tolerated(0.08) benign(0.096) TCGA-F5-6814-01 22 44285254 44285254 C A PNPLA5 Missense_Mutation p.E219D 0.15 tolerated(0.37) benign(0.013) TCGA-F5-6814-01 22 44328824 44328824 T C PNPLA3 Missense_Mutation p.S185P 0.32 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 22 44328871 44328871 G A PNPLA3 Silent p.T200T 0.41 TCGA-F5-6814-01 22 44330507 44330507 C T PNPLA3 Nonsense_Mutation p.R240* 0.37 TCGA-F5-6814-01 22 44342238 44342238 T C PNPLA3 Silent p.S474S 0.08 TCGA-F5-6814-01 22 44368826 44368826 G T SAMM50 Nonsense_Mutation p.E169* 0.27 TCGA-F5-6814-01 22 44968006 44968006 T G LINC00207 RNA 0.12 TCGA-F5-6814-01 22 45767370 45767370 A C SMC1B Missense_Mutation p.F765C 0.31 deleterious(0.03) possibly_damaging(0.882) TCGA-F5-6814-01 22 45802729 45802729 G A SMC1B Missense_Mutation p.R106C 0.32 tolerated(0.13) benign(0.003) TCGA-F5-6814-01 22 45821860 45821860 G T RIBC2 Missense_Mutation p.E231D 0.24 deleterious(0.04) benign(0.14) TCGA-F5-6814-01 22 45960828 45960828 C A FBLN1 Intron 0.27 TCGA-F5-6814-01 22 46098653 46098653 A C ATXN10 Missense_Mutation p.K191N 0.25 tolerated(0.07) benign(0.02) TCGA-F5-6814-01 22 46134656 46134656 A G ATXN10 Missense_Mutation p.T314A 0.25 deleterious(0.01) benign(0.021) TCGA-F5-6814-01 22 46594368 46594368 G T PPARA Nonsense_Mutation p.E30* 0.18 TCGA-F5-6814-01 22 46627869 46627869 G A PPARA Missense_Mutation p.A298T 0.25 tolerated(0.78) benign(0.002) TCGA-F5-6814-01 22 46654847 46654847 T C PKDREJ Missense_Mutation p.D1458G 0.33 tolerated(0.42) benign(0.002) TCGA-F5-6814-01 22 46761580 46761580 T G CELSR1 Missense_Mutation p.E2769D 0.25 tolerated(0.44) benign(0.026) TCGA-F5-6814-01 22 50471777 50471777 G A TTLL8 Silent p.I395I 0.29 TCGA-F5-6814-01 22 50559018 50559018 C T MOV10L1 Silent p.I514I 0.16 TCGA-F5-6814-01 22 50591527 50591527 C A MOV10L1 Silent p.P982P 0.26 TCGA-F5-6814-01 22 50599252 50599252 C T MOV10L1 Nonsense_Mutation p.R1154* 0.30 TCGA-F5-6814-01 22 50632076 50632076 G T TRABD Missense_Mutation p.Q35H 0.35 tolerated_low_confidence(0.11) benign(0.004) TCGA-F5-6814-01 22 50637518 50637518 C A TRABD 3'UTR 0.41 TCGA-F5-6814-01 22 50682735 50682735 C A TUBGCP6 Missense_Mutation p.D52Y 0.31 deleterious(0) possibly_damaging(0.819) TCGA-F5-6814-01 22 50706259 50706259 T G MAPK11 Missense_Mutation p.K79T 0.56 tolerated(0.1) benign(0.013) TCGA-F5-6814-01 22 50926159 50926159 C T MIOX Silent p.F55F 0.33 TCGA-F5-6814-01 22 50988476 50988476 C T KLHDC7B 3'UTR 0.44 TCGA-F5-6814-01 22 51009354 51009354 T C CPT1B Missense_Mutation p.K665R 0.29 tolerated(0.3) benign(0.012) TCGA-F5-6814-01 22 51066001 51066001 A G ARSA Silent p.S69S 0.42 TCGA-F5-6814-01 22 51178149 51178149 C T ACR Silent p.F103F 0.28 TCGA-F5-6814-01 2 100079038 100079038 C T REV1 Missense_Mutation p.R34Q 0.29 tolerated(0.1) benign(0.015) TCGA-F5-6814-01 2 100175421 100175421 G A AFF3 Silent p.C1092C 0.19 TCGA-F5-6814-01 2 100721997 100721997 C T AFF3 5'UTR 0.16 TCGA-F5-6814-01 2 100900764 100900764 T G LONRF2 Missense_Mutation p.N754T 0.27 deleterious_low_confidence(0.01) benign(0.265) TCGA-F5-6814-01 2 100916305 100916305 C T LONRF2 Missense_Mutation p.E381K 0.29 tolerated(0.29) benign(0.081) TCGA-F5-6814-01 2 101011982 101011982 T G CHST10 Missense_Mutation p.E174D 0.25 tolerated(0.49) benign(0.047) TCGA-F5-6814-01 2 101624239 101624239 C A TBC1D8 3'UTR 0.38 TCGA-F5-6814-01 2 101910543 101910543 C T RNF149 Missense_Mutation p.S238N 0.09 tolerated(0.18) benign(0.008) TCGA-F5-6814-01 2 102446042 102446042 C T MAP4K4 Missense_Mutation p.A165V 0.38 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 2 102636160 102636160 T G IL1R2 Missense_Mutation p.L192V 0.23 deleterious(0) possibly_damaging(0.866) TCGA-F5-6814-01 2 102808426 102808426 T C IL1RL2 Missense_Mutation p.V112A 0.26 tolerated(0.06) benign(0.11) TCGA-F5-6814-01 2 102851373 102851373 C T IL1RL2 Silent p.I438I 0.40 TCGA-F5-6814-01 2 102968071 102968071 A G IL1RL1 Missense_Mutation p.H454R 0.46 deleterious(0) possibly_damaging(0.826) TCGA-F5-6814-01 2 102979110 102979110 G T IL18R1 5'UTR 0.38 TCGA-F5-6814-01 2 102984450 102984450 G A IL18R1 Missense_Mutation p.R75K 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-F5-6814-01 2 103067353 103067353 C A IL18RAP Missense_Mutation p.S419Y 0.40 deleterious(0.01) probably_damaging(0.976) TCGA-F5-6814-01 2 103124739 103124739 A C SLC9A4 Missense_Mutation p.Q467P 0.34 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 2 103130623 103130623 C A SLC9A4 Missense_Mutation p.S545Y 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 103274351 103274351 G T SLC9A2 Missense_Mutation p.Q206H 0.20 tolerated(0.39) possibly_damaging(0.748) TCGA-F5-6814-01 2 103374912 103374912 A C TMEM182 5'Flank 0.39 TCGA-F5-6814-01 2 105473168 105473168 C T POU3F3 Silent p.I400I 0.46 TCGA-F5-6814-01 2 105883956 105883956 T G TGFBRAP1 Missense_Mutation p.N823H 0.08 tolerated(0.07) benign(0.013) TCGA-F5-6814-01 2 105885896 105885896 C T TGFBRAP1 Missense_Mutation p.E747K 0.11 tolerated(0.07) benign(0.311) TCGA-F5-6814-01 2 105959478 105959478 C T C2orf49 Missense_Mutation p.S147L 0.20 tolerated(0.06) benign(0.084) TCGA-F5-6814-01 2 106013261 106013261 C A FHL2 Intron 0.23 TCGA-F5-6814-01 2 106498143 106498143 G A NCK2 Missense_Mutation p.V196M 0.24 deleterious(0.03) benign(0.151) TCGA-F5-6814-01 2 106498151 106498151 T C NCK2 Silent p.H198H 0.16 TCGA-F5-6814-01 2 106694263 106694263 A C C2orf40 Missense_Mutation p.N110H 0.25 deleterious(0.03) probably_damaging(0.939) TCGA-F5-6814-01 2 107021684 107021684 A G RGPD3 Silent p.G1756G 0.20 TCGA-F5-6814-01 2 107032421 107032421 A C RGPD3 Missense_Mutation p.F1650C 0.09 deleterious_low_confidence(0) benign(0.001) TCGA-F5-6814-01 2 107049441 107049441 C A RGPD3 Missense_Mutation p.D807Y 0.33 deleterious(0) benign(0.059) TCGA-F5-6814-01 2 107084793 107084793 C T RGPD3 5'UTR 0.36 TCGA-F5-6814-01 2 10729197 10729197 C A NOL10 Missense_Mutation p.D606Y 0.32 deleterious(0.01) benign(0.264) TCGA-F5-6814-01 2 10729370 10729370 G A NOL10 Missense_Mutation p.S548L 0.41 tolerated(0.06) possibly_damaging(0.684) TCGA-F5-6814-01 2 107423124 107423124 G T ST6GAL2 3'UTR 0.38 TCGA-F5-6814-01 2 107459825 107459825 G T ST6GAL2 Missense_Mutation p.F203L 0.32 benign(0.002) TCGA-F5-6814-01 2 108499153 108499153 T C RGPD4 Missense_Mutation p.L1697S 0.14 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-F5-6814-01 2 108507242 108507242 C T RGPD4 3'UTR 0.09 TCGA-F5-6814-01 2 108626847 108626847 C T SLC5A7 Missense_Mutation p.L425F 0.42 deleterious(0.01) possibly_damaging(0.737) TCGA-F5-6814-01 2 108917337 108917337 G T SULT1C2 Intron 0.19 TCGA-F5-6814-01 2 108921969 108921969 A C SULT1C2 Missense_Mutation p.K243N 0.36 tolerated(0.33) probably_damaging(0.986) TCGA-F5-6814-01 2 108924869 108924869 C A SULT1C2 Silent p.I291I 0.29 TCGA-F5-6814-01 2 108925002 108925002 T C SULT1C2 3'UTR 0.27 TCGA-F5-6814-01 2 109003824 109003824 G T SULT1C4 Missense_Mutation p.R282I 0.20 tolerated(0.13) benign(0.006) TCGA-F5-6814-01 2 109087058 109087058 G A GCC2 Missense_Mutation p.E425K 0.32 deleterious(0.04) probably_damaging(0.985) TCGA-F5-6814-01 2 10928834 10928834 C - PDIA6 Frame_Shift_Del p.M331Cfs*37 0.12 TCGA-F5-6814-01 2 10928881 10928881 T G PDIA6 Missense_Mutation p.N314H 0.08 deleterious(0) benign(0.259) TCGA-F5-6814-01 2 109368374 109368374 A C RANBP2 Missense_Mutation p.N560T 0.08 tolerated(0.28) benign(0.024) TCGA-F5-6814-01 2 109380599 109380599 T C RANBP2 Missense_Mutation p.F1202L 0.14 deleterious(0) benign(0.006) TCGA-F5-6814-01 2 109381084 109381084 A G RANBP2 Silent p.L1363L 0.22 TCGA-F5-6814-01 2 109381087 109381087 G T RANBP2 Missense_Mutation p.K1364N 0.19 tolerated(0.22) benign(0.288) TCGA-F5-6814-01 2 109382601 109382601 C A RANBP2 Nonsense_Mutation p.S1869* 0.33 TCGA-F5-6814-01 2 109389335 109389335 G T RANBP2 Nonsense_Mutation p.E2709* 0.18 TCGA-F5-6814-01 2 109398749 109398749 G T RANBP2 Missense_Mutation p.D2976Y 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 109399063 109399063 A C RANBP2 Missense_Mutation p.E3038D 0.12 tolerated(0.12) probably_damaging(0.973) TCGA-F5-6814-01 2 109432533 109432533 G T CCDC138 Missense_Mutation p.R393I 0.35 tolerated(0.06) benign(0.02) TCGA-F5-6814-01 2 110343330 110343330 T C SEPT10 Missense_Mutation p.Q62R 0.35 tolerated(0.62) benign(0.219) TCGA-F5-6814-01 2 110376078 110376078 T G SOWAHC 3'UTR 0.51 TCGA-F5-6814-01 2 11053321 11053321 A G KCNF1 Missense_Mutation p.I257V 0.32 tolerated(0.63) benign(0.078) TCGA-F5-6814-01 2 110901134 110901134 G T NPHP1 Nonsense_Mutation p.S561* 0.39 TCGA-F5-6814-01 2 111408326 111408326 G A BUB1 Missense_Mutation p.S667L 0.35 tolerated(0.34) benign(0.001) TCGA-F5-6814-01 2 111411069 111411069 C T BUB1 Silent p.A636A 0.26 TCGA-F5-6814-01 2 111431664 111431664 A C BUB1 Missense_Mutation p.F75C 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 111556293 111556293 G T ACOXL Missense_Mutation p.R151I 0.14 deleterious(0.05) benign(0.031) TCGA-F5-6814-01 2 111721219 111721219 C T ACOXL Intron 0.30 TCGA-F5-6814-01 2 112541502 112541502 C A ANAPC1 Missense_Mutation p.D1679Y 0.18 deleterious(0.03) probably_damaging(0.991) TCGA-F5-6814-01 2 112740547 112740547 G A MERTK Missense_Mutation p.V425M 0.44 tolerated(0.13) benign(0.009) TCGA-F5-6814-01 2 112758799 112758799 T G MERTK Missense_Mutation p.D542E 0.09 tolerated(0.34) benign(0.066) TCGA-F5-6814-01 2 112786409 112786409 G A MERTK Missense_Mutation p.D990N 0.46 deleterious_low_confidence(0.05) benign(0.064) TCGA-F5-6814-01 2 112854625 112854625 T G TMEM87B Missense_Mutation p.F370C 0.24 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 2 113080268 113080268 G T ZC3H6 Nonsense_Mutation p.E377* 0.20 TCGA-F5-6814-01 2 113260544 113260544 C A TTL Missense_Mutation p.L221I 0.08 deleterious(0.03) probably_damaging(0.982) TCGA-F5-6814-01 2 113300139 113300139 C T POLR1B Missense_Mutation p.S23F 0.08 deleterious(0.03) benign(0.001) TCGA-F5-6814-01 2 113344101 113344101 C T CHCHD5 Intron 0.34 TCGA-F5-6814-01 2 1133487 1133487 G A SNTG2 Missense_Mutation p.E135K 0.08 tolerated(0.07) benign(0.032) TCGA-F5-6814-01 2 11347913 11347913 C A ROCK2 Nonsense_Mutation p.E830* 0.26 TCGA-F5-6814-01 2 113479394 113479394 G T NT5DC4 Splice_Site p.X4_splice 0.12 TCGA-F5-6814-01 2 113480702 113480702 G A NT5DC4 Missense_Mutation p.R165Q 0.29 tolerated(0.12) benign(0.069) TCGA-F5-6814-01 2 113500221 113500221 T C NT5DC4 3'UTR 0.18 TCGA-F5-6814-01 2 113514214 113514214 A C CKAP2L Missense_Mutation p.F245C 0.14 deleterious(0.01) possibly_damaging(0.849) TCGA-F5-6814-01 2 11351861 11351861 C T ROCK2 Missense_Mutation p.D717N 0.30 tolerated(0.19) probably_damaging(0.954) TCGA-F5-6814-01 2 11367484 11367484 T A ROCK2 Missense_Mutation p.D255V 0.29 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 2 113676341 113676341 A C IL37 Missense_Mutation p.Q204H 0.12 tolerated(0.61) benign(0.002) TCGA-F5-6814-01 2 113780158 113780158 G T IL36B 3'UTR 0.36 TCGA-F5-6814-01 2 114399803 114399803 C A RABL2A 3'UTR 0.30 TCGA-F5-6814-01 2 114697577 114697577 A G ACTR3 Silent p.P194P 0.42 TCGA-F5-6814-01 2 114713202 114713202 A G ACTR3 Silent p.P360P 0.36 TCGA-F5-6814-01 2 118731559 118731559 G A CCDC93 Silent p.T271T 0.50 TCGA-F5-6814-01 2 118766222 118766222 C A CCDC93 Nonsense_Mutation p.E19* 0.35 TCGA-F5-6814-01 2 118864694 118864694 C T INSIG2 Missense_Mutation p.R189C 0.38 deleterious(0) benign(0.044) TCGA-F5-6814-01 2 118865885 118865885 C A INSIG2 Missense_Mutation p.S222Y 0.21 tolerated(0.18) possibly_damaging(0.467) TCGA-F5-6814-01 2 118865910 118865910 A C INSIG2 3'UTR 0.24 TCGA-F5-6814-01 2 11907976 11907976 A C LPIN1 Missense_Mutation p.N143H 0.41 deleterious(0.01) possibly_damaging(0.831) TCGA-F5-6814-01 2 11931861 11931861 A C LPIN1 Intron 0.27 TCGA-F5-6814-01 2 119604400 119604400 A C EN1 Missense_Mutation p.F115C 0.21 deleterious(0) possibly_damaging(0.869) TCGA-F5-6814-01 2 120404626 120404626 G T PCDP1 Missense_Mutation p.R773L 0.30 tolerated(0.42) benign(0.015) TCGA-F5-6814-01 2 120567476 120567476 G A PTPN4 Missense_Mutation p.R16Q 0.14 deleterious(0) possibly_damaging(0.652) TCGA-F5-6814-01 2 120672797 120672797 T G PTPN4 Missense_Mutation p.F269L 0.45 tolerated(0.13) probably_damaging(0.994) TCGA-F5-6814-01 2 120932417 120932417 C T EPB41L5 Silent p.S712S 0.38 TCGA-F5-6814-01 2 121043651 121043651 G A RALB Missense_Mutation p.E106K 0.41 tolerated(0.27) possibly_damaging(0.561) TCGA-F5-6814-01 2 121740294 121740294 C T GLI2 Silent p.F507F 0.18 TCGA-F5-6814-01 2 122484964 122484964 G T NIFK 3'UTR 0.36 TCGA-F5-6814-01 2 125555684 125555684 G T CNTNAP5 Missense_Mutation p.V1001F 0.33 tolerated(0.43) benign(0.012) TCGA-F5-6814-01 2 125669092 125669092 G A CNTNAP5 Missense_Mutation p.R1234Q 0.30 tolerated(0.35) benign(0.003) TCGA-F5-6814-01 2 125672841 125672841 A C CNTNAP5 3'UTR 0.22 TCGA-F5-6814-01 2 127453784 127453784 C T GYPC 3'UTR 0.38 TCGA-F5-6814-01 2 127958803 127958803 A G CYP27C1 Missense_Mutation p.F95L 0.40 tolerated(0.17) probably_damaging(0.998) TCGA-F5-6814-01 2 128038106 128038106 A G ERCC3 Missense_Mutation p.F482L 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 128087551 128087551 C A MAP3K2 Missense_Mutation p.D138Y 0.45 deleterious(0.04) benign(0.109) TCGA-F5-6814-01 2 128409501 128409501 A G GPR17 3'UTR 0.39 TCGA-F5-6814-01 2 128460251 128460251 G A WDR33 3'UTR 0.33 TCGA-F5-6814-01 2 128461304 128461304 A C WDR33 3'UTR 0.34 TCGA-F5-6814-01 2 128525832 128525832 C A WDR33 Missense_Mutation p.M103I 0.17 tolerated(0.31) unknown(0) TCGA-F5-6814-01 2 128627099 128627099 C T AMMECR1L Missense_Mutation p.R218Q 0.49 tolerated(0.1) benign(0.141) TCGA-F5-6814-01 2 128900735 128900735 A C UGGT1 Missense_Mutation p.K596T 0.11 tolerated(0.15) possibly_damaging(0.603) TCGA-F5-6814-01 2 129026352 129026352 G A HS6ST1 Missense_Mutation p.S207L 0.27 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 2 130739607 130739607 C T RAB6C 3'UTR 0.30 TCGA-F5-6814-01 2 130869577 130869577 C A POTEF Missense_Mutation p.R303I 0.36 tolerated_low_confidence(0.06) benign(0.194) TCGA-F5-6814-01 2 130872455 130872455 T G POTEF Missense_Mutation p.K270T 0.40 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-F5-6814-01 2 130951687 130951687 C T TUBA3E Missense_Mutation p.R243Q 0.26 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 2 131097314 131097314 C A CCDC115 Intron 0.12 TCGA-F5-6814-01 2 131099495 131099495 G A CCDC115 Missense_Mutation p.A45V 0.24 deleterious(0) probably_damaging(0.977) TCGA-F5-6814-01 2 131128169 131128169 T A PTPN18 Missense_Mutation p.D243E 0.47 tolerated(0.14) benign(0.167) TCGA-F5-6814-01 2 131520820 131520820 C T AMER3 Missense_Mutation p.S392L 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 131522742 131522742 T G AMER3 3'UTR 0.10 TCGA-F5-6814-01 2 131524545 131524545 C A AMER3 3'UTR 0.38 TCGA-F5-6814-01 2 131672747 131672747 C T ARHGEF4 5'Flank 0.35 TCGA-F5-6814-01 2 131673190 131673190 G T ARHGEF4 5'Flank 0.31 TCGA-F5-6814-01 2 131674407 131674407 G A ARHGEF4 5'UTR 0.36 TCGA-F5-6814-01 2 131976117 131976117 G T POTEE Missense_Mutation p.D48Y 0.38 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-F5-6814-01 2 131984493 131984493 G T POTEE Missense_Mutation p.R303I 0.13 tolerated_low_confidence(0.06) possibly_damaging(0.9) TCGA-F5-6814-01 2 131985877 131985877 G A POTEE Silent p.E326E 0.12 TCGA-F5-6814-01 2 132010512 132010512 G A POTEE Missense_Mutation p.E540K 0.17 deleterious_low_confidence(0) benign(0.305) TCGA-F5-6814-01 2 132021097 132021097 T G POTEE Missense_Mutation p.L690R 0.33 deleterious_low_confidence(0) benign(0.008) TCGA-F5-6814-01 2 132021543 132021543 G A POTEE Missense_Mutation p.V839M 0.07 deleterious_low_confidence(0.01) benign(0.151) TCGA-F5-6814-01 2 132273205 132273205 T C AC093838.4 RNA 0.08 TCGA-F5-6814-01 2 132912248 132912248 C A ANKRD30BL Missense_Mutation p.D201Y 0.23 deleterious(0) possibly_damaging(0.677) TCGA-F5-6814-01 2 133541847 133541847 C T NCKAP5 Missense_Mutation p.R846Q 0.31 tolerated(0.25) benign(0.089) TCGA-F5-6814-01 2 133541996 133541996 T G NCKAP5 Missense_Mutation p.Q796H 0.31 deleterious(0.03) benign(0.008) TCGA-F5-6814-01 2 135711617 135711617 C A CCNT2 Missense_Mutation p.S531Y 0.48 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 2 135712264 135712264 T G CCNT2 3'UTR 0.62 TCGA-F5-6814-01 2 135743540 135743540 C A MAP3K19 Nonsense_Mutation p.E968* 0.10 TCGA-F5-6814-01 2 135743750 135743750 C T MAP3K19 Missense_Mutation p.D898N 0.09 tolerated(0.22) benign(0.037) TCGA-F5-6814-01 2 135744244 135744244 T G MAP3K19 Missense_Mutation p.K733T 0.48 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 2 135745171 135745171 T C MAP3K19 Missense_Mutation p.K424R 0.53 tolerated(0.06) benign(0.015) TCGA-F5-6814-01 2 135745447 135745447 G T MAP3K19 Missense_Mutation p.S332Y 0.45 tolerated(0.05) possibly_damaging(0.59) TCGA-F5-6814-01 2 135745497 135745497 T G MAP3K19 Missense_Mutation p.E315D 0.23 tolerated(0.61) benign(0.004) TCGA-F5-6814-01 2 135745546 135745546 C A MAP3K19 Missense_Mutation p.R299M 0.21 deleterious(0) possibly_damaging(0.907) TCGA-F5-6814-01 2 135888250 135888250 G A RAB3GAP1 Missense_Mutation p.E399K 0.09 deleterious(0.01) benign(0.184) TCGA-F5-6814-01 2 135890491 135890491 G T RAB3GAP1 Missense_Mutation p.E421D 0.11 tolerated(0.31) benign(0.003) TCGA-F5-6814-01 2 135965174 135965174 G A ZRANB3 Nonsense_Mutation p.R947* 0.27 TCGA-F5-6814-01 2 135988494 135988494 C T ZRANB3 Missense_Mutation p.E515K 0.16 deleterious(0.03) benign(0.298) TCGA-F5-6814-01 2 136362398 136362398 C T R3HDM1 5'UTR 0.27 TCGA-F5-6814-01 2 136403091 136403091 C A R3HDM1 Missense_Mutation p.F539L 0.14 tolerated(0.92) benign(0.002) TCGA-F5-6814-01 2 136545931 136545931 C T LCT Missense_Mutation p.R1916Q 0.17 tolerated_low_confidence(0.21) benign(0) TCGA-F5-6814-01 2 136620181 136620181 G T MCM6 Missense_Mutation p.L406I 0.33 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 2 136673886 136673886 A C DARS Missense_Mutation p.F339C 0.11 deleterious(0.03) probably_damaging(0.991) TCGA-F5-6814-01 2 136872853 136872853 G A CXCR4 Silent p.I219I 0.20 TCGA-F5-6814-01 2 137748474 137748474 G A THSD7B Intron 0.11 TCGA-F5-6814-01 2 137814378 137814378 T C THSD7B Silent p.C176C 0.09 TCGA-F5-6814-01 2 137814622 137814622 G T THSD7B Nonsense_Mutation p.E258* 0.55 TCGA-F5-6814-01 2 137917856 137917856 C T THSD7B Silent p.C481C 0.10 TCGA-F5-6814-01 2 138414664 138414664 G A THSD7B Missense_Mutation p.A1440T 0.11 tolerated(1) unknown(0) TCGA-F5-6814-01 2 138771747 138771747 G A HNMT 3'UTR 0.21 TCGA-F5-6814-01 2 139326654 139326654 C T SPOPL 3'UTR 0.41 TCGA-F5-6814-01 2 141092041 141092041 C A LRP1B Missense_Mutation p.K4068N 0.22 possibly_damaging(0.728) TCGA-F5-6814-01 2 141116507 141116507 G T LRP1B Missense_Mutation p.L3714I 0.33 benign(0.003) TCGA-F5-6814-01 2 141128375 141128375 G T LRP1B Silent p.R3638R 0.12 TCGA-F5-6814-01 2 141458149 141458149 G A LRP1B Missense_Mutation p.L2157F 0.17 possibly_damaging(0.587) TCGA-F5-6814-01 2 141473611 141473611 G T LRP1B Missense_Mutation p.S1985Y 0.24 possibly_damaging(0.86) TCGA-F5-6814-01 2 141474350 141474350 T C LRP1B Missense_Mutation p.N1932D 0.14 benign(0.292) TCGA-F5-6814-01 2 141528469 141528469 C A LRP1B Missense_Mutation p.K1869N 0.36 benign(0.403) TCGA-F5-6814-01 2 141571373 141571373 G T LRP1B Missense_Mutation p.L1738I 0.46 benign(0.364) TCGA-F5-6814-01 2 141607898 141607898 T G LRP1B Missense_Mutation p.E1571A 0.10 benign(0.292) TCGA-F5-6814-01 2 141625357 141625357 C A LRP1B Nonsense_Mutation p.E1461* 0.50 TCGA-F5-6814-01 2 141643882 141643882 G T LRP1B Silent p.I1263I 0.34 TCGA-F5-6814-01 2 141660684 141660684 G A LRP1B Missense_Mutation p.P1191S 0.14 possibly_damaging(0.641) TCGA-F5-6814-01 2 141665527 141665527 T C LRP1B Missense_Mutation p.T1147A 0.34 possibly_damaging(0.585) TCGA-F5-6814-01 2 141709435 141709435 C T LRP1B Missense_Mutation p.D988N 0.12 probably_damaging(0.962) TCGA-F5-6814-01 2 141709478 141709478 G A LRP1B Silent p.F973F 0.21 TCGA-F5-6814-01 2 141806681 141806681 G T LRP1B Missense_Mutation p.L555M 0.15 possibly_damaging(0.665) TCGA-F5-6814-01 2 1418252 1418252 G A TPO Silent p.S24S 0.31 TCGA-F5-6814-01 2 143676232 143676232 C A KYNU Missense_Mutation p.S75Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 143712393 143712393 G T KYNU Nonsense_Mutation p.E130* 0.25 TCGA-F5-6814-01 2 144194492 144194492 C A ARHGAP15 Nonsense_Mutation p.S195* 0.20 TCGA-F5-6814-01 2 144245023 144245023 G T ARHGAP15 Missense_Mutation p.R262I 0.09 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 2 1442590 1442590 A C TPO Intron 0.55 TCGA-F5-6814-01 2 145146950 145146950 G A ZEB2 3'UTR 0.22 TCGA-F5-6814-01 2 145155896 145155896 C A ZEB2 Missense_Mutation p.R953I 0.62 tolerated(0.12) possibly_damaging(0.854) TCGA-F5-6814-01 2 145157568 145157568 C T ZEB2 Missense_Mutation p.D396N 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-F5-6814-01 2 145157774 145157774 G A ZEB2 Missense_Mutation p.S327L 0.25 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 2 145162409 145162409 C A ZEB2 Nonsense_Mutation p.E196* 0.50 TCGA-F5-6814-01 2 145162549 145162549 G A ZEB2 Missense_Mutation p.A149V 0.24 tolerated(0.16) benign(0.001) TCGA-F5-6814-01 2 145187538 145187538 C A ZEB2 Missense_Mutation p.K43N 0.19 deleterious(0.03) benign(0.261) TCGA-F5-6814-01 2 1459946 1459946 C T TPO Silent p.I237I 0.41 TCGA-F5-6814-01 2 148654044 148654044 G A ACVR2A Missense_Mutation p.G77D 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 148672871 148672871 G A ACVR2A Missense_Mutation p.E214K 0.46 tolerated(0.08) possibly_damaging(0.555) TCGA-F5-6814-01 2 148674873 148674873 G T ACVR2A Nonsense_Mutation p.E232* 0.40 TCGA-F5-6814-01 2 149447864 149447864 G A EPC2 Missense_Mutation p.A79T 0.50 tolerated(0.05) possibly_damaging(0.823) TCGA-F5-6814-01 2 149679726 149679726 C T KIF5C Silent p.F49F 0.45 TCGA-F5-6814-01 2 149806436 149806436 C T KIF5C Silent p.I266I 0.47 TCGA-F5-6814-01 2 149847637 149847637 C T KIF5C Silent p.S610S 0.59 TCGA-F5-6814-01 2 149861937 149861937 C T KIF5C Missense_Mutation p.R802W 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 152112056 152112056 C A RBM43 Nonsense_Mutation p.E69* 0.38 TCGA-F5-6814-01 2 152267823 152267823 A T RIF1 Nonsense_Mutation p.K52* 0.06 TCGA-F5-6814-01 2 152279468 152279468 T C RIF1 Missense_Mutation p.L233S 0.57 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 2 152292041 152292041 C T RIF1 Missense_Mutation p.S381L 0.10 tolerated(0.09) benign(0.075) TCGA-F5-6814-01 2 152342308 152342308 C A NEB Missense_Mutation p.G8515V 0.25 probably_damaging(1) TCGA-F5-6814-01 2 152353454 152353454 C T NEB Splice_Site p.X8131_splice 0.22 TCGA-F5-6814-01 2 152425159 152425159 C T NEB Silent p.A5869A 0.35 TCGA-F5-6814-01 2 152466558 152466558 A C NEB Missense_Mutation p.I4032S 0.42 benign(0.041) TCGA-F5-6814-01 2 152470872 152470872 T G NEB Missense_Mutation p.K3840T 0.17 possibly_damaging(0.703) TCGA-F5-6814-01 2 152473894 152473894 C T NEB Missense_Mutation p.R3722Q 0.56 benign(0.008) TCGA-F5-6814-01 2 152521068 152521068 G A NEB Missense_Mutation p.P1800S 0.20 benign(0.005) TCGA-F5-6814-01 2 152528911 152528911 G A NEB Missense_Mutation p.T1424M 0.28 possibly_damaging(0.848) TCGA-F5-6814-01 2 152547297 152547297 C T NEB Missense_Mutation p.V752I 0.20 benign(0.279) TCGA-F5-6814-01 2 152582058 152582058 T G NEB Missense_Mutation p.K104T 0.19 benign(0.149) TCGA-F5-6814-01 2 152584256 152584256 G T NEB Missense_Mutation p.F81L 0.26 probably_damaging(0.992) TCGA-F5-6814-01 2 153378513 153378514 - A FMNL2 Frame_Shift_Ins p.W61Mfs*6 0.43 TCGA-F5-6814-01 2 153473638 153473638 G A FMNL2 Missense_Mutation p.A416T 0.11 benign(0.113) TCGA-F5-6814-01 2 153512810 153512810 T G PRPF40A 3'UTR 0.19 TCGA-F5-6814-01 2 15449369 15449369 G T NBAS Missense_Mutation p.L1529I 0.36 deleterious(0.04) probably_damaging(0.987) TCGA-F5-6814-01 2 15468411 15468411 T G NBAS Missense_Mutation p.Q1458P 0.31 tolerated(0.31) benign(0) TCGA-F5-6814-01 2 155102455 155102455 G T GALNT13 Nonsense_Mutation p.E273* 0.38 TCGA-F5-6814-01 2 155158078 155158078 G T GALNT13 Missense_Mutation p.D378Y 0.32 deleterious(0.02) benign(0.015) TCGA-F5-6814-01 2 155303221 155303221 A C GALNT13 Intron 0.36 TCGA-F5-6814-01 2 155711550 155711550 G T KCNJ3 Missense_Mutation p.D411Y 0.43 deleterious_low_confidence(0.01) benign(0.08) TCGA-F5-6814-01 2 15742743 15742743 G T DDX1 Nonsense_Mutation p.G127* 0.20 TCGA-F5-6814-01 2 158115391 158115391 A G GALNT5 Missense_Mutation p.N266S 0.35 tolerated(0.09) benign(0.011) TCGA-F5-6814-01 2 158156105 158156105 C A GALNT5 Nonsense_Mutation p.Y681* 0.46 TCGA-F5-6814-01 2 158399269 158399269 G A ACVR1C Missense_Mutation p.S350L 0.34 deleterious(0.02) benign(0.015) TCGA-F5-6814-01 2 158974411 158974411 G A UPP2 Missense_Mutation p.D196N 0.22 tolerated(0.19) benign(0.153) TCGA-F5-6814-01 2 159672323 159672323 G A DAPL1 Missense_Mutation p.R105Q 0.16 deleterious(0.02) probably_damaging(0.997) TCGA-F5-6814-01 2 160206417 160206417 C A BAZ2B Missense_Mutation p.K1555N 0.11 possibly_damaging(0.893) TCGA-F5-6814-01 2 160310196 160310196 C A BAZ2B Nonsense_Mutation p.E88* 0.15 TCGA-F5-6814-01 2 160585661 160585661 C A MARCH7 Nonsense_Mutation p.S43* 0.13 TCGA-F5-6814-01 2 160738720 160738720 C T LY75-CD302 Silent p.A387A 0.37 TCGA-F5-6814-01 2 160738721 160738721 G A LY75-CD302 Missense_Mutation p.A387V 0.23 tolerated(0.35) benign(0.01) TCGA-F5-6814-01 2 160801474 160801474 A C PLA2R1 Missense_Mutation p.L1363V 0.48 tolerated(1) benign(0.002) TCGA-F5-6814-01 2 160803302 160803302 A G PLA2R1 Intron 0.53 TCGA-F5-6814-01 2 160876640 160876640 G A PLA2R1 Silent p.L477L 0.15 TCGA-F5-6814-01 2 161052904 161052904 C T ITGB6 Missense_Mutation p.E57K 0.20 tolerated(0.21) benign(0.037) TCGA-F5-6814-01 2 161157204 161157204 G T RBMS1 Missense_Mutation p.H200N 0.12 tolerated(0.11) benign(0.076) TCGA-F5-6814-01 2 162276752 162276752 C T TBR1 Missense_Mutation p.R392W 0.45 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 2 163000665 163000665 G A GCG Silent p.V136V 0.17 TCGA-F5-6814-01 2 163027377 163027377 A C FAP 3'UTR 0.33 TCGA-F5-6814-01 2 163059615 163059615 G A FAP Missense_Mutation p.S363L 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-F5-6814-01 2 163128887 163128887 C T IFIH1 Missense_Mutation p.R822Q 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 163133977 163133977 C A IFIH1 Missense_Mutation p.K664N 0.32 tolerated(0.2) benign(0.002) TCGA-F5-6814-01 2 163134117 163134117 G A IFIH1 Nonsense_Mutation p.R618* 0.42 TCGA-F5-6814-01 2 163228337 163228337 G T KCNH7 3'UTR 0.46 TCGA-F5-6814-01 2 163361035 163361035 G T KCNH7 Nonsense_Mutation p.S349* 0.16 TCGA-F5-6814-01 2 164466421 164466421 G A FIGN Missense_Mutation p.R641W 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 2 1648486 1648486 G A PXDN Missense_Mutation p.A1216V 0.48 deleterious(0) probably_damaging(0.916) TCGA-F5-6814-01 2 1658265 1658265 C T PXDN Missense_Mutation p.R618Q 0.09 tolerated(0.4) benign(0.044) TCGA-F5-6814-01 2 165946644 165946644 A G SCN3A 3'UTR 0.15 TCGA-F5-6814-01 2 165969407 165969407 G T SCN3A Missense_Mutation p.F1277L 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 2 165984279 165984279 G A SCN3A Silent p.I1085I 0.34 TCGA-F5-6814-01 2 165986594 165986594 C A SCN3A Missense_Mutation p.M926I 0.23 deleterious(0) benign(0.054) TCGA-F5-6814-01 2 165997203 165997203 T C SCN3A Silent p.G659G 0.17 TCGA-F5-6814-01 2 165997345 165997345 A G SCN3A Missense_Mutation p.F612S 0.09 tolerated(0.07) probably_damaging(0.998) TCGA-F5-6814-01 2 166012313 166012313 G A SCN3A Nonsense_Mutation p.R378* 0.10 TCGA-F5-6814-01 2 166020323 166020323 G T SCN3A Intron 0.21 TCGA-F5-6814-01 2 166032728 166032728 C A SCN3A Missense_Mutation p.K59N 0.08 tolerated(0.19) probably_damaging(0.998) TCGA-F5-6814-01 2 166166893 166166893 T C SCN2A Missense_Mutation p.I253T 0.28 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 2 166166959 166166959 G T SCN2A Missense_Mutation p.R275L 0.20 deleterious(0.01) possibly_damaging(0.533) TCGA-F5-6814-01 2 166183491 166183491 G A SCN2A Missense_Mutation p.E716K 0.08 deleterious(0.02) possibly_damaging(0.528) TCGA-F5-6814-01 2 166237141 166237141 T C SCN2A Missense_Mutation p.Y1450H 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 2 166243300 166243300 C A SCN2A Silent p.V1532V 0.18 TCGA-F5-6814-01 2 166243391 166243391 C A SCN2A Missense_Mutation p.L1563M 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 166245338 166245338 C T SCN2A Silent p.Y1674Y 0.35 TCGA-F5-6814-01 2 166246199 166246199 G T SCN2A Missense_Mutation p.E1961D 0.23 tolerated(0.71) probably_damaging(0.997) TCGA-F5-6814-01 2 166870268 166870268 T C SCN1A Missense_Mutation p.S1231G 0.09 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 2 166897980 166897980 C A SCN1A Splice_Site p.X726_splice 0.43 TCGA-F5-6814-01 2 167055492 167055492 C T SCN9A Missense_Mutation p.R1875Q 0.37 tolerated(0.07) probably_damaging(1) TCGA-F5-6814-01 2 167055625 167055625 A C SCN9A Missense_Mutation p.L1831V 0.09 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 2 167129229 167129229 G T SCN9A Missense_Mutation p.L1000I 0.16 tolerated(0.45) benign(0.419) TCGA-F5-6814-01 2 167136869 167136869 A G SCN9A Silent p.L770L 0.08 TCGA-F5-6814-01 2 167143048 167143048 T G SCN9A Missense_Mutation p.K467T 0.32 tolerated(0.28) possibly_damaging(0.709) TCGA-F5-6814-01 2 167266439 167266439 G T SCN7A Missense_Mutation p.L1240I 0.36 tolerated(0.49) benign(0.004) TCGA-F5-6814-01 2 167289073 167289073 C A SCN7A Nonsense_Mutation p.E783* 0.13 TCGA-F5-6814-01 2 167322036 167322036 C A SCN7A Nonsense_Mutation p.E293* 0.31 TCGA-F5-6814-01 2 167333977 167333977 T A SCN7A Missense_Mutation p.K77I 0.16 deleterious(0) probably_damaging(0.94) TCGA-F5-6814-01 2 167760126 167760126 C T XIRP2 Missense_Mutation p.A45V 0.39 benign(0.002) TCGA-F5-6814-01 2 168099257 168099257 T G XIRP2 Missense_Mutation p.F452C 0.35 probably_damaging(1) TCGA-F5-6814-01 2 168102399 168102399 C T XIRP2 Silent p.F1499F 0.36 TCGA-F5-6814-01 2 168103556 168103556 C A XIRP2 Missense_Mutation p.S1885Y 0.30 possibly_damaging(0.681) TCGA-F5-6814-01 2 168103936 168103936 G T XIRP2 Nonsense_Mutation p.E2012* 0.28 TCGA-F5-6814-01 2 168104984 168104984 C T XIRP2 Missense_Mutation p.S2361L 0.30 possibly_damaging(0.664) TCGA-F5-6814-01 2 168105076 168105076 T C XIRP2 Missense_Mutation p.F2392L 0.10 benign(0.027) TCGA-F5-6814-01 2 168106217 168106217 A C XIRP2 Missense_Mutation p.Q2772P 0.12 benign(0.022) TCGA-F5-6814-01 2 168107253 168107253 C T XIRP2 Silent p.R3117R 0.42 TCGA-F5-6814-01 2 168108007 168108007 C T XIRP2 Missense_Mutation p.R3369C 0.35 possibly_damaging(0.685) TCGA-F5-6814-01 2 168725516 168725516 C A B3GALT1 5'UTR 0.46 TCGA-F5-6814-01 2 168726259 168726259 C T B3GALT1 Missense_Mutation p.S237L 0.34 deleterious(0) probably_damaging(0.97) TCGA-F5-6814-01 2 168921864 168921864 C T STK39 Missense_Mutation p.E424K 0.31 tolerated(0.34) benign(0.02) TCGA-F5-6814-01 2 169721353 169721353 T G NOSTRIN Missense_Mutation p.V522G 0.24 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 2 169842646 169842646 C A ABCB11 Nonsense_Mutation p.E353* 0.13 TCGA-F5-6814-01 2 169952078 169952078 A C DHRS9 Missense_Mutation p.K254T 0.10 tolerated(0.66) benign(0.003) TCGA-F5-6814-01 2 170007501 170007501 A G LRP2 Missense_Mutation p.I4166T 0.08 possibly_damaging(0.904) TCGA-F5-6814-01 2 170019038 170019038 T C LRP2 Missense_Mutation p.D3944G 0.41 benign(0.103) TCGA-F5-6814-01 2 170032941 170032941 G T LRP2 Missense_Mutation p.F3517L 0.43 possibly_damaging(0.902) TCGA-F5-6814-01 2 170042459 170042459 G T LRP2 Missense_Mutation p.F3133L 0.40 probably_damaging(0.968) TCGA-F5-6814-01 2 170062915 170062915 A C LRP2 Missense_Mutation p.L2439V 0.22 benign(0.005) TCGA-F5-6814-01 2 170072852 170072852 G T LRP2 Missense_Mutation p.L1913I 0.35 benign(0.314) TCGA-F5-6814-01 2 170093699 170093699 G A LRP2 Silent p.V1535V 0.08 TCGA-F5-6814-01 2 170115656 170115656 G T LRP2 Missense_Mutation p.L798I 0.34 possibly_damaging(0.45) TCGA-F5-6814-01 2 170354178 170354178 T C BBS5 Silent p.L220L 0.08 TCGA-F5-6814-01 2 170382193 170382193 T G KLHL41 Missense_Mutation p.L603R 0.13 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 2 170394636 170394636 C T FASTKD1 Missense_Mutation p.R654Q 0.19 deleterious(0.04) benign(0) TCGA-F5-6814-01 2 170401330 170401330 T C FASTKD1 Missense_Mutation p.I573V 0.37 tolerated(0.3) benign(0.032) TCGA-F5-6814-01 2 170428296 170428296 T C FASTKD1 Missense_Mutation p.K82E 0.37 deleterious(0) possibly_damaging(0.521) TCGA-F5-6814-01 2 170502602 170502602 C A CCDC173 Nonsense_Mutation p.E470* 0.40 TCGA-F5-6814-01 2 170531099 170531099 C A CCDC173 Missense_Mutation p.D217Y 0.15 tolerated(0.07) probably_damaging(0.981) TCGA-F5-6814-01 2 170557959 170557959 T G PHOSPHO2 Missense_Mutation p.F160V 0.41 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 2 170592311 170592311 A G KLHL23 Missense_Mutation p.M263V 0.09 tolerated(0.3) benign(0.001) TCGA-F5-6814-01 2 170592706 170592706 G T KLHL23 Missense_Mutation p.E394D 0.42 tolerated(0.33) benign(0.038) TCGA-F5-6814-01 2 170598014 170598014 G T KLHL23 Nonsense_Mutation p.E445* 0.33 TCGA-F5-6814-01 2 170606090 170606090 T C KLHL23 Missense_Mutation p.C509R 0.14 tolerated(0.79) possibly_damaging(0.899) TCGA-F5-6814-01 2 170663401 170663401 A C SSB Missense_Mutation p.K151T 0.14 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 2 170751735 170751735 G T UBR3 Nonsense_Mutation p.E384* 0.25 TCGA-F5-6814-01 2 170897429 170897429 C A UBR3 Missense_Mutation p.L1532I 0.29 tolerated(0.07) probably_damaging(0.984) TCGA-F5-6814-01 2 171056672 171056672 G T MYO3B Nonsense_Mutation p.E67* 0.40 TCGA-F5-6814-01 2 171191942 171191942 T G MYO3B Missense_Mutation p.F266C 0.47 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 2 171248960 171248960 C T MYO3B Silent p.F582F 0.18 TCGA-F5-6814-01 2 171355111 171355111 C A MYO3B Nonsense_Mutation p.Y1008* 0.08 TCGA-F5-6814-01 2 171641279 171641279 A G ERICH2 Missense_Mutation p.E51G 0.41 deleterious(0.01) benign(0.011) TCGA-F5-6814-01 2 171804911 171804911 T G GORASP2 Missense_Mutation p.F39V 0.08 deleterious(0) benign(0.001) TCGA-F5-6814-01 2 171807862 171807862 G A GORASP2 Missense_Mutation p.E154K 0.38 deleterious(0) probably_damaging(0.963) TCGA-F5-6814-01 2 171811234 171811234 C A GORASP2 Missense_Mutation p.S214Y 0.76 deleterious(0.02) benign(0.081) TCGA-F5-6814-01 2 173344729 173344729 A G ITGA6 Missense_Mutation p.K500R 0.09 tolerated(0.63) benign(0.029) TCGA-F5-6814-01 2 173354318 173354318 G T ITGA6 Missense_Mutation p.V871L 0.19 tolerated(0.37) benign(0.007) TCGA-F5-6814-01 2 173429263 173429263 G A PDK1 Missense_Mutation p.R148Q 0.10 deleterious(0) possibly_damaging(0.814) TCGA-F5-6814-01 2 173883447 173883447 C T RAPGEF4 Missense_Mutation p.S691L 0.24 deleterious(0) possibly_damaging(0.535) TCGA-F5-6814-01 2 174228142 174228142 G T CDCA7 Missense_Mutation p.M191I 0.38 tolerated(0.12) benign(0.037) TCGA-F5-6814-01 2 175213020 175213020 A C CIR1 3'UTR 0.22 TCGA-F5-6814-01 2 175324652 175324652 T C GPR155 Silent p.A575A 0.32 TCGA-F5-6814-01 2 175346677 175346677 G A GPR155 Missense_Mutation p.S3F 0.30 deleterious_low_confidence(0) possibly_damaging(0.613) TCGA-F5-6814-01 2 175432604 175432604 C T WIPF1 Missense_Mutation p.D443N 0.14 tolerated(0.13) benign(0.125) TCGA-F5-6814-01 2 175666442 175666442 G T CHN1 Missense_Mutation p.L401I 0.38 deleterious(0) benign(0.257) TCGA-F5-6814-01 2 175957339 175957339 T C ATF2 Intron 0.12 TCGA-F5-6814-01 2 176043969 176043969 C A ATP5G3 Missense_Mutation p.V44L 0.11 tolerated(0.66) benign(0.001) TCGA-F5-6814-01 2 176804285 176804285 T G KIAA1715 Missense_Mutation p.Q269H 0.35 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 2 17695303 17695303 C A RAD51AP2 Nonsense_Mutation p.E1102* 0.42 TCGA-F5-6814-01 2 17695335 17695335 C A RAD51AP2 Missense_Mutation p.R1091I 0.40 deleterious(0) probably_damaging(0.948) TCGA-F5-6814-01 2 17696643 17696643 C A RAD51AP2 Nonsense_Mutation p.E1014* 0.39 TCGA-F5-6814-01 2 176973827 176973827 A G HOXD11 Missense_Mutation p.N325S 0.34 tolerated(0.29) possibly_damaging(0.816) TCGA-F5-6814-01 2 17698144 17698144 A C RAD51AP2 Missense_Mutation p.I513M 0.08 tolerated(0.12) benign(0.066) TCGA-F5-6814-01 2 176981827 176981827 G A HOXD10 Missense_Mutation p.R89Q 0.39 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 2 17698469 17698469 C A RAD51AP2 Missense_Mutation p.R405I 0.29 tolerated(0.11) benign(0.222) TCGA-F5-6814-01 2 176996086 176996086 T C HOXD8 Missense_Mutation p.F207L 0.31 deleterious(0) probably_damaging(0.925) TCGA-F5-6814-01 2 177054622 177054622 G T HOXD1 Nonsense_Mutation p.E247* 0.44 TCGA-F5-6814-01 2 178097872 178097872 T G NFE2L2 Intron 0.21 TCGA-F5-6814-01 2 178326715 178326715 A C AGPS Missense_Mutation p.K322T 0.11 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 2 178879064 178879064 G T PDE11A Missense_Mutation p.P346T 0.15 tolerated(0.48) probably_damaging(0.995) TCGA-F5-6814-01 2 178879166 178879166 T G PDE11A Missense_Mutation p.I312L 0.32 deleterious(0.01) possibly_damaging(0.768) TCGA-F5-6814-01 2 178879184 178879184 G A PDE11A Nonsense_Mutation p.R306* 0.30 TCGA-F5-6814-01 2 178969054 178969054 A C CYCTP RNA 0.12 TCGA-F5-6814-01 2 17907706 17907706 C A SMC6 Nonsense_Mutation p.E192* 0.46 TCGA-F5-6814-01 2 179170937 179170937 C T OSBPL6 Missense_Mutation p.S9F 0.43 deleterious_low_confidence(0) possibly_damaging(0.847) TCGA-F5-6814-01 2 179259059 179259059 T C OSBPL6 Silent p.L890L 0.40 TCGA-F5-6814-01 2 179259137 179259137 C A OSBPL6 Missense_Mutation p.L916I 0.36 tolerated(1) benign(0.004) TCGA-F5-6814-01 2 179296802 179296802 G T PRKRA 3'UTR 0.20 TCGA-F5-6814-01 2 179343146 179343146 C A FKBP7 Missense_Mutation p.K27N 0.32 tolerated(0.2) benign(0.353) TCGA-F5-6814-01 2 179343185 179343185 G T FKBP7 Missense_Mutation p.F14L 0.39 tolerated(0.21) benign(0.005) TCGA-F5-6814-01 2 179393789 179393789 G T TTN Silent p.L35563L 0.42 TCGA-F5-6814-01 2 179412572 179412572 G A TTN Nonsense_Mutation p.R31261* 0.09 TCGA-F5-6814-01 2 179413550 179413550 G T TTN Missense_Mutation p.H30935N 0.42 TCGA-F5-6814-01 2 179414007 179414007 G T TTN Silent p.V30782V 0.37 TCGA-F5-6814-01 2 179414093 179414093 A C TTN Missense_Mutation p.Y30754D 0.10 TCGA-F5-6814-01 2 179422227 179422227 G T TTN Silent p.I29254I 0.33 TCGA-F5-6814-01 2 179424095 179424095 C T TTN Missense_Mutation p.E28922K 0.37 TCGA-F5-6814-01 2 179424787 179424787 T G TTN Missense_Mutation p.K28691T 0.42 TCGA-F5-6814-01 2 179425461 179425461 C A TTN Missense_Mutation p.E28466D 0.17 TCGA-F5-6814-01 2 179428074 179428074 A C TTN Missense_Mutation p.I27595M 0.39 TCGA-F5-6814-01 2 179429299 179429299 A G TTN Missense_Mutation p.V27187A 0.37 TCGA-F5-6814-01 2 179429918 179429918 G A TTN Missense_Mutation p.R26981W 0.23 TCGA-F5-6814-01 2 179431793 179431793 C A TTN Nonsense_Mutation p.E26356* 0.18 TCGA-F5-6814-01 2 179431825 179431825 G A TTN Missense_Mutation p.S26345F 0.38 TCGA-F5-6814-01 2 179433873 179433873 G A TTN Silent p.I25662I 0.18 TCGA-F5-6814-01 2 179435454 179435454 A C TTN Missense_Mutation p.I25135M 0.38 TCGA-F5-6814-01 2 179454489 179454489 C T TTN Missense_Mutation p.E20655K 0.40 TCGA-F5-6814-01 2 179456539 179456539 G A TTN Missense_Mutation p.R20003C 0.33 TCGA-F5-6814-01 2 179457547 179457547 C A TTN Missense_Mutation p.D19767Y 0.47 TCGA-F5-6814-01 2 179457772 179457772 T C TTN Missense_Mutation p.T19692A 0.17 TCGA-F5-6814-01 2 179479148 179479148 A C TTN Intron 0.11 TCGA-F5-6814-01 2 179479458 179479458 A C TTN Missense_Mutation p.D16261E 0.31 TCGA-F5-6814-01 2 179479489 179479489 G T TTN Intron 0.12 TCGA-F5-6814-01 2 179485033 179485033 G A TTN Silent p.F15405F 0.24 TCGA-F5-6814-01 2 179485109 179485109 G T TTN Missense_Mutation p.S15380Y 0.22 TCGA-F5-6814-01 2 179495829 179495829 T G TTN Missense_Mutation p.K14649T 0.30 TCGA-F5-6814-01 2 179495888 179495888 T C TTN Silent p.K14629K 0.35 TCGA-F5-6814-01 2 179496965 179496965 C T TTN Silent p.S14552S 0.17 TCGA-F5-6814-01 2 179498659 179498659 G T TTN Silent p.I14189I 0.40 TCGA-F5-6814-01 2 179499294 179499294 G A TTN Nonsense_Mutation p.R14072* 0.29 TCGA-F5-6814-01 2 179500824 179500824 C T TTN Missense_Mutation p.R13825Q 0.20 TCGA-F5-6814-01 2 179504781 179504781 C T TTN Missense_Mutation p.E13594K 0.39 TCGA-F5-6814-01 2 179505995 179505995 T G TTN Missense_Mutation p.K13536Q 0.39 TCGA-F5-6814-01 2 179506040 179506040 G T TTN Missense_Mutation p.L13521I 0.36 TCGA-F5-6814-01 2 179511287 179511287 C A TTN Splice_Site p.X13408_splice 0.33 TCGA-F5-6814-01 2 179515546 179515546 T G TTN Missense_Mutation p.K13214T 0.14 TCGA-F5-6814-01 2 179536771 179536771 T - TTN Frame_Shift_Del p.V11719Ffs*4 0.11 TCGA-F5-6814-01 2 179542573 179542573 C A TTN Nonsense_Mutation p.E11356* 0.30 TCGA-F5-6814-01 2 179556801 179556801 C T TTN Silent p.V10568V 0.11 TCGA-F5-6814-01 2 179577277 179577277 C A TTN Missense_Mutation p.E9124D 0.29 TCGA-F5-6814-01 2 179579144 179579144 G T TTN Missense_Mutation p.S8786Y 0.10 TCGA-F5-6814-01 2 179584781 179584781 G T TTN Missense_Mutation p.S7863Y 0.09 TCGA-F5-6814-01 2 179588272 179588272 G A TTN Silent p.I7185I 0.32 TCGA-F5-6814-01 2 179595809 179595809 T C TTN Silent p.Q5861Q 0.09 TCGA-F5-6814-01 2 179596814 179596814 T G TTN Missense_Mutation p.S5628R 0.24 TCGA-F5-6814-01 2 179599471 179599471 G A TTN Silent p.V5060V 0.44 TCGA-F5-6814-01 2 179602960 179602960 A C TTN Missense_Mutation p.I4740M 0.14 TCGA-F5-6814-01 2 179604954 179604954 C A TTN Nonsense_Mutation p.E4336* 0.19 TCGA-F5-6814-01 2 179612402 179612402 A C TTN Intron 0.10 TCGA-F5-6814-01 2 179613041 179613041 T G TTN Intron 0.33 TCGA-F5-6814-01 2 17961336 17961336 C T GEN1 Silent p.I452I 0.23 TCGA-F5-6814-01 2 179613922 179613922 A C TTN Intron 0.12 TCGA-F5-6814-01 2 179615321 179615321 G A TTN Intron 0.35 TCGA-F5-6814-01 2 179615326 179615326 G T TTN Intron 0.29 TCGA-F5-6814-01 2 179616537 179616537 A G TTN Intron 0.08 TCGA-F5-6814-01 2 17962045 17962045 T G GEN1 Missense_Mutation p.I522M 0.40 tolerated(0.12) possibly_damaging(0.711) TCGA-F5-6814-01 2 179643755 179643755 G A TTN Missense_Mutation p.P1352S 0.33 TCGA-F5-6814-01 2 179648971 179648971 A C TTN Missense_Mutation p.S867R 0.21 TCGA-F5-6814-01 2 179656861 179656861 C A TTN Nonsense_Mutation p.E534* 0.16 TCGA-F5-6814-01 2 179664629 179664629 C A TTN Nonsense_Mutation p.E198* 0.30 TCGA-F5-6814-01 2 179701590 179701590 C A CCDC141 Intron 0.38 TCGA-F5-6814-01 2 179826151 179826151 C A CCDC141 Nonsense_Mutation p.E196* 0.11 TCGA-F5-6814-01 2 17998037 17998037 C T MSGN1 Silent p.V84V 0.33 TCGA-F5-6814-01 2 17998176 17998176 G A MSGN1 Missense_Mutation p.E131K 0.38 deleterious(0.01) possibly_damaging(0.865) TCGA-F5-6814-01 2 17998213 17998213 C T MSGN1 Missense_Mutation p.A143V 0.30 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 180383289 180383289 G T ZNF385B Missense_Mutation p.S158Y 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 180634491 180634491 C A ZNF385B 5'UTR 0.39 TCGA-F5-6814-01 2 180810347 180810347 C A CWC22 Nonsense_Mutation p.E746* 0.39 TCGA-F5-6814-01 2 180838396 180838396 G T CWC22 Missense_Mutation p.L239I 0.44 tolerated(0.21) benign(0.022) TCGA-F5-6814-01 2 18114205 18114205 A C KCNS3 3'UTR 0.32 TCGA-F5-6814-01 2 182339939 182339939 C T ITGA4 Silent p.L160L 0.21 TCGA-F5-6814-01 2 182542837 182542837 C T NEUROD1 Missense_Mutation p.A251T 0.45 tolerated(0.23) benign(0.044) TCGA-F5-6814-01 2 182780523 182780523 A C SSFA2 Missense_Mutation p.D719A 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 182783340 182783340 G T SSFA2 Nonsense_Mutation p.G935* 0.07 TCGA-F5-6814-01 2 183094766 183094766 A G PDE1A Silent p.T230T 0.18 TCGA-F5-6814-01 2 183095791 183095791 A C PDE1A Missense_Mutation p.F178C 0.26 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 2 183586800 183586800 T G DNAJC10 Missense_Mutation p.F139C 0.20 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 2 183623613 183623613 C A DNAJC10 Missense_Mutation p.L665I 0.40 tolerated(0.16) benign(0.222) TCGA-F5-6814-01 2 183730978 183730978 C T FRZB Silent p.Q101Q 0.43 TCGA-F5-6814-01 2 183731065 183731065 G A FRZB Silent p.F72F 0.38 TCGA-F5-6814-01 2 183826937 183826937 G A NCKAP1 Nonsense_Mutation p.R617* 0.19 TCGA-F5-6814-01 2 183960325 183960325 G A DUSP19 Missense_Mutation p.R198H 0.07 tolerated(0.24) benign(0.022) TCGA-F5-6814-01 2 185800616 185800616 G T ZNF804A Missense_Mutation p.D165Y 0.17 deleterious(0) possibly_damaging(0.819) TCGA-F5-6814-01 2 186670191 186670191 G A FSIP2 Silent p.Q5475Q 0.10 TCGA-F5-6814-01 2 186671130 186671130 T G FSIP2 Nonsense_Mutation p.Y5788* 0.17 TCGA-F5-6814-01 2 186672065 186672065 A C FSIP2 Missense_Mutation p.K6100T 0.27 benign(0.057) TCGA-F5-6814-01 2 186673366 186673366 G T FSIP2 Missense_Mutation p.D6534Y 0.33 possibly_damaging(0.616) TCGA-F5-6814-01 2 186680109 186680109 G T FSIP2 Missense_Mutation p.K6868N 0.16 benign(0.288) TCGA-F5-6814-01 2 18736985 18736985 G A RDH14 Silent p.F161F 0.25 TCGA-F5-6814-01 2 187487150 187487150 A C ITGAV Missense_Mutation p.K134T 0.41 tolerated(0.31) benign(0.033) TCGA-F5-6814-01 2 187521024 187521024 C T ITGAV Nonsense_Mutation p.R539* 0.34 TCGA-F5-6814-01 2 187540546 187540546 G A ITGAV Splice_Site p.X941_splice 0.34 TCGA-F5-6814-01 2 187542016 187542016 T G ITGAV Silent p.T1048T 0.08 TCGA-F5-6814-01 2 187608258 187608258 T C FAM171B Missense_Mutation p.I174T 0.24 deleterious(0) possibly_damaging(0.886) TCGA-F5-6814-01 2 187626238 187626238 G T FAM171B Missense_Mutation p.R390I 0.37 deleterious(0.01) probably_damaging(0.938) TCGA-F5-6814-01 2 187626414 187626414 G T FAM171B Nonsense_Mutation p.E449* 0.47 TCGA-F5-6814-01 2 187627140 187627140 G T FAM171B Missense_Mutation p.D691Y 0.16 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 2 187627519 187627519 G A FAM171B Missense_Mutation p.R817Q 0.41 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 2 187627770 187627770 A C FAM171B 3'UTR 0.60 TCGA-F5-6814-01 2 187693253 187693253 T C ZSWIM2 Missense_Mutation p.T454A 0.27 tolerated(0.21) benign(0.003) TCGA-F5-6814-01 2 188223951 188223951 T G CALCRL Missense_Mutation p.Y277S 0.38 deleterious(0) probably_damaging(0.917) TCGA-F5-6814-01 2 188245293 188245293 C T CALCRL Silent p.K103K 0.29 TCGA-F5-6814-01 2 188361686 188361686 C A TFPI Nonsense_Mutation p.E81* 0.40 TCGA-F5-6814-01 2 188361697 188361697 C A TFPI Missense_Mutation p.R77L 0.39 tolerated(0.08) benign(0.015) TCGA-F5-6814-01 2 1893091 1893091 G A MYT1L Silent p.G812G 0.45 TCGA-F5-6814-01 2 189405995 189405995 G T GULP1 Missense_Mutation p.D117Y 0.08 deleterious(0) probably_damaging(0.983) TCGA-F5-6814-01 2 189449030 189449030 C A GULP1 Silent p.I216I 0.11 TCGA-F5-6814-01 2 189458751 189458751 G T GULP1 3'UTR 0.37 TCGA-F5-6814-01 2 189870090 189870090 A G COL3A1 Silent p.K982K 0.55 TCGA-F5-6814-01 2 189932791 189932791 A G COL5A2 Missense_Mutation p.S451P 0.22 probably_damaging(0.958) TCGA-F5-6814-01 2 190531976 190531976 A G ASNSD1 Missense_Mutation p.K373R 0.41 tolerated(0.18) benign(0.05) TCGA-F5-6814-01 2 190531988 190531988 A C ASNSD1 Missense_Mutation p.K377T 0.18 tolerated(0.55) benign(0.056) TCGA-F5-6814-01 2 190532126 190532126 G A ASNSD1 Missense_Mutation p.R423Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 190619951 190619951 A G OSGEPL1 Missense_Mutation p.F186S 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 1907034 1907034 G T MYT1L Missense_Mutation p.P615H 0.36 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 2 190728835 190728835 A C PMS1 Missense_Mutation p.K741N 0.22 tolerated(0.22) benign(0.339) TCGA-F5-6814-01 2 190927168 190927168 C A MSTN Missense_Mutation p.R52I 0.37 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 2 191065343 191065343 T G C2orf88 3'UTR 0.22 TCGA-F5-6814-01 2 191067290 191067290 C A C2orf88 3'UTR 0.26 TCGA-F5-6814-01 2 191069871 191069871 G A HIBCH Missense_Mutation p.S378F 0.23 deleterious(0.02) benign(0.011) TCGA-F5-6814-01 2 191301518 191301518 G A MFSD6 Missense_Mutation p.V255I 0.16 tolerated(0.35) benign(0.001) TCGA-F5-6814-01 2 191797590 191797590 G T GLS Intron 0.49 TCGA-F5-6814-01 2 191835400 191835400 C T STAT1 3'UTR 0.13 TCGA-F5-6814-01 2 191843712 191843712 G T STAT1 Missense_Mutation p.F581L 0.14 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 191873731 191873731 G T STAT1 Missense_Mutation p.F77L 0.51 tolerated(0.19) benign(0.113) TCGA-F5-6814-01 2 191894582 191894582 G T STAT4 Missense_Mutation p.P744H 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.749) TCGA-F5-6814-01 2 191897733 191897733 A C STAT4 Missense_Mutation p.I665M 0.25 deleterious(0) possibly_damaging(0.748) TCGA-F5-6814-01 2 192250744 192250744 C T MYO1B Silent p.C496C 0.09 TCGA-F5-6814-01 2 1926131 1926131 C T MYT1L Silent p.P470P 0.26 TCGA-F5-6814-01 2 192863870 192863870 A C TMEFF2 Missense_Mutation p.S201A 0.36 deleterious(0.04) possibly_damaging(0.645) TCGA-F5-6814-01 2 19552153 19552153 C A OSR1 Missense_Mutation p.E228D 0.25 tolerated(0.09) benign(0.042) TCGA-F5-6814-01 2 196578193 196578193 G T SLC39A10 Nonsense_Mutation p.E538* 0.22 TCGA-F5-6814-01 2 196738377 196738377 A C DNAH7 Missense_Mutation p.F2110V 0.11 deleterious(0.03) probably_damaging(0.938) TCGA-F5-6814-01 2 196759938 196759938 G A DNAH7 Missense_Mutation p.S1553L 0.26 deleterious(0) probably_damaging(0.936) TCGA-F5-6814-01 2 197002084 197002084 A G STK17B 3'UTR 0.27 TCGA-F5-6814-01 2 197065980 197065980 G T HECW2 3'UTR 0.19 TCGA-F5-6814-01 2 197092929 197092929 C A HECW2 Nonsense_Mutation p.E1272* 0.37 TCGA-F5-6814-01 2 197106879 197106879 G A HECW2 Silent p.F1193F 0.36 TCGA-F5-6814-01 2 197184547 197184547 T C HECW2 Missense_Mutation p.D356G 0.23 deleterious_low_confidence(0) benign(0.221) TCGA-F5-6814-01 2 197870448 197870448 A C ANKRD44 Missense_Mutation p.Y748D 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 198495761 198495761 G T RFTN2 Missense_Mutation p.S301Y 0.32 deleterious(0.01) benign(0.114) TCGA-F5-6814-01 2 198573113 198573113 T C MARS2 3'UTR 0.34 TCGA-F5-6814-01 2 198949573 198949573 C T PLCL1 Silent p.L444L 0.28 TCGA-F5-6814-01 2 198968580 198968580 T G PLCL1 Missense_Mutation p.L1009V 0.40 tolerated(0.13) benign(0.077) TCGA-F5-6814-01 2 200188664 200188664 C T SATB2 Silent p.P468P 0.13 TCGA-F5-6814-01 2 200298163 200298163 C T SATB2 Missense_Mutation p.A82T 0.30 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 2 200797850 200797850 G A TYW5 Silent p.F296F 0.52 TCGA-F5-6814-01 2 200808505 200808505 C A TYW5 Nonsense_Mutation p.E96* 0.26 TCGA-F5-6814-01 2 201363641 201363641 C T KCTD18 Missense_Mutation p.R180K 0.37 tolerated(0.42) benign(0.043) TCGA-F5-6814-01 2 201436304 201436304 G T SGOL2 Missense_Mutation p.R412I 0.37 deleterious(0) probably_damaging(0.924) TCGA-F5-6814-01 2 201477373 201477373 G T AOX1 Missense_Mutation p.E435D 0.22 tolerated(0.43) benign(0.392) TCGA-F5-6814-01 2 201680193 201680193 G A BZW1 Missense_Mutation p.R97Q 0.30 deleterious(0.01) probably_damaging(0.988) TCGA-F5-6814-01 2 201683014 201683014 A C BZW1 Missense_Mutation p.K271N 0.15 tolerated(0.22) benign(0.028) TCGA-F5-6814-01 2 201725897 201725897 A C CLK1 Intron 0.17 TCGA-F5-6814-01 2 201726043 201726043 T G CLK1 Missense_Mutation p.K145T 0.34 tolerated(0.07) possibly_damaging(0.756) TCGA-F5-6814-01 2 20173362 20173362 C A WDR35 Missense_Mutation p.D282Y 0.23 deleterious(0) possibly_damaging(0.681) TCGA-F5-6814-01 2 201776051 201776051 G A ORC2 Silent p.F569F 0.19 TCGA-F5-6814-01 2 202137448 202137448 A C CASP8 Missense_Mutation p.I226L 0.14 tolerated(0.11) benign(0.034) TCGA-F5-6814-01 2 202400828 202400828 T G ALS2CR11 Missense_Mutation p.K474N 0.07 deleterious(0.03) benign(0.286) TCGA-F5-6814-01 2 202430486 202430486 G A ALS2CR11 Nonsense_Mutation p.R315* 0.27 TCGA-F5-6814-01 2 202483704 202483704 C T ALS2CR11 Silent p.S50S 0.13 TCGA-F5-6814-01 2 202902211 202902211 C T FZD7 3'UTR 0.67 TCGA-F5-6814-01 2 202902954 202902954 G T FZD7 3'UTR 0.30 TCGA-F5-6814-01 2 202939771 202939771 C T AC079354.1 Missense_Mutation p.S81L 0.09 deleterious(0.02) benign(0.177) TCGA-F5-6814-01 2 203075460 203075460 C A SUMO1 Nonsense_Mutation p.E79* 0.18 TCGA-F5-6814-01 2 203079083 203079083 T C SUMO1 Silent p.R54R 0.14 TCGA-F5-6814-01 2 203142722 203142722 G A NOP58 Missense_Mutation p.A58T 0.34 tolerated(0.18) benign(0.117) TCGA-F5-6814-01 2 203149110 203149110 G T NOP58 Nonsense_Mutation p.E114* 0.23 TCGA-F5-6814-01 2 203156068 203156068 G T NOP58 Intron 0.21 TCGA-F5-6814-01 2 203684585 203684585 C A ICA1L Nonsense_Mutation p.E133* 0.12 TCGA-F5-6814-01 2 203826138 203826138 T G CARF Missense_Mutation p.F274C 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 203836409 203836409 G T CARF Nonsense_Mutation p.E427* 0.31 TCGA-F5-6814-01 2 203991379 203991379 T C NBEAL1 Missense_Mutation p.Y1000H 0.26 tolerated(0.12) benign(0.049) TCGA-F5-6814-01 2 204009442 204009442 G T NBEAL1 Missense_Mutation p.K1627N 0.21 tolerated(0.48) benign(0.197) TCGA-F5-6814-01 2 204030900 204030900 G T NBEAL1 Nonsense_Mutation p.E1886* 0.10 TCGA-F5-6814-01 2 204036715 204036715 G A NBEAL1 Missense_Mutation p.R2027Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 204037515 204037515 C T NBEAL1 Nonsense_Mutation p.R2059* 0.20 TCGA-F5-6814-01 2 204067455 204067455 T G NBEAL1 Missense_Mutation p.I2457S 0.41 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 204082231 204082231 C A NBEAL1 3'UTR 0.47 TCGA-F5-6814-01 2 204267326 204267326 A C ABI2 Missense_Mutation p.N287T 0.28 tolerated(0.5) benign(0.057) TCGA-F5-6814-01 2 204305855 204305855 C T RAPH1 Silent p.P686P 0.38 TCGA-F5-6814-01 2 204306057 204306057 T C RAPH1 Missense_Mutation p.Y619C 0.13 possibly_damaging(0.711) TCGA-F5-6814-01 2 204319219 204319219 G A RAPH1 Silent p.N449N 0.21 TCGA-F5-6814-01 2 206617599 206617599 C T NRP2 Silent p.F648F 0.57 TCGA-F5-6814-01 2 206641195 206641195 C T NRP2 Intron 0.50 TCGA-F5-6814-01 2 206874510 206874510 G T INO80D Missense_Mutation p.F517L 0.48 deleterious(0) possibly_damaging(0.742) TCGA-F5-6814-01 2 207041108 207041108 G T GPR1 Silent p.L288L 0.46 TCGA-F5-6814-01 2 207041615 207041615 C A GPR1 Missense_Mutation p.L119F 0.14 tolerated(0.07) possibly_damaging(0.513) TCGA-F5-6814-01 2 207169620 207169620 A C ZDBF2 Missense_Mutation p.K123T 0.38 tolerated(0.46) benign(0.005) TCGA-F5-6814-01 2 207171746 207171746 G T ZDBF2 Missense_Mutation p.D832Y 0.09 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 2 207173714 207173714 G A ZDBF2 Missense_Mutation p.E1488K 0.17 deleterious(0.04) benign(0.292) TCGA-F5-6814-01 2 207175093 207175093 G T ZDBF2 Missense_Mutation p.Q1947H 0.21 deleterious(0.03) benign(0.216) TCGA-F5-6814-01 2 207176090 207176090 G A ZDBF2 Missense_Mutation p.E2280K 0.26 tolerated(0.22) benign(0.305) TCGA-F5-6814-01 2 207176279 207176279 C T ZDBF2 Missense_Mutation p.R2343W 0.21 deleterious(0) possibly_damaging(0.689) TCGA-F5-6814-01 2 207516474 207516474 T G DYTN 3'UTR 0.50 TCGA-F5-6814-01 2 207527675 207527675 C A DYTN Nonsense_Mutation p.E529* 0.34 TCGA-F5-6814-01 2 207611119 207611119 A G MDH1B Silent p.F416F 0.10 TCGA-F5-6814-01 2 207611134 207611134 C T MDH1B Silent p.P411P 0.22 TCGA-F5-6814-01 2 207631374 207631374 G A FASTKD2 5'UTR 0.41 TCGA-F5-6814-01 2 207656554 207656554 A C FASTKD2 3'UTR 0.22 TCGA-F5-6814-01 2 208134134 208134134 C T MIR1302-4 RNA 0.08 TCGA-F5-6814-01 2 208432190 208432190 T G CREB1 Missense_Mutation p.S103A 0.37 tolerated(1) benign(0.004) TCGA-F5-6814-01 2 208486635 208486635 C T METTL21A Missense_Mutation p.V52I 0.36 tolerated(0.11) benign(0.113) TCGA-F5-6814-01 2 208841455 208841455 G T PLEKHM3 Missense_Mutation p.S489Y 0.31 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 2 20886767 20886767 G A C2orf43 Nonsense_Mutation p.R292* 0.16 TCGA-F5-6814-01 2 209045541 209045541 C T C2orf80 Splice_Site p.X99_splice 0.34 TCGA-F5-6814-01 2 209101706 209101706 T A IDH1 3'UTR 0.33 TCGA-F5-6814-01 2 209142350 209142350 A G PIKFYVE Silent p.R177R 0.10 TCGA-F5-6814-01 2 209163454 209163454 G A PIKFYVE Missense_Mutation p.R334Q 0.23 tolerated(0.09) probably_damaging(0.97) TCGA-F5-6814-01 2 209190648 209190648 G A PIKFYVE Missense_Mutation p.R1038Q 0.23 deleterious(0.01) benign(0.099) TCGA-F5-6814-01 2 209302589 209302589 G T PTH2R Missense_Mutation p.D132Y 0.13 tolerated(0.11) benign(0.316) TCGA-F5-6814-01 2 20939763 20939763 G T C2orf43 Nonsense_Mutation p.S224* 0.21 TCGA-F5-6814-01 2 20974736 20974736 G T C2orf43 Nonsense_Mutation p.S101* 0.45 TCGA-F5-6814-01 2 210543353 210543353 A G MAP2 Missense_Mutation p.K107R 0.38 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-F5-6814-01 2 210557706 210557706 C T MAP2 Missense_Mutation p.T271M 0.19 tolerated_low_confidence(0.2) benign(0.007) TCGA-F5-6814-01 2 210558869 210558869 A G MAP2 Missense_Mutation p.M659V 0.11 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-F5-6814-01 2 210559248 210559248 C A MAP2 Nonsense_Mutation p.S785* 0.35 TCGA-F5-6814-01 2 210559424 210559424 C T MAP2 Missense_Mutation p.R844C 0.37 deleterious(0.04) benign(0.005) TCGA-F5-6814-01 2 210559581 210559581 T G MAP2 Missense_Mutation p.F896C 0.54 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 2 210560347 210560347 G T MAP2 Missense_Mutation p.K1151N 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 2 210561313 210561313 G T MAP2 Nonsense_Mutation p.E1410* 0.15 TCGA-F5-6814-01 2 210680084 210680084 C A UNC80 Missense_Mutation p.S435Y 0.37 probably_damaging(0.948) TCGA-F5-6814-01 2 210685060 210685060 T C UNC80 Missense_Mutation p.V663A 0.09 probably_damaging(0.954) TCGA-F5-6814-01 2 210786318 210786318 G A UNC80 Missense_Mutation p.G1747D 0.38 probably_damaging(0.998) TCGA-F5-6814-01 2 210835677 210835677 T G UNC80 Missense_Mutation p.I2685R 0.22 probably_damaging(0.989) TCGA-F5-6814-01 2 210884926 210884926 G T RPE 3'UTR 0.32 TCGA-F5-6814-01 2 210962894 210962894 G A KANSL1L Missense_Mutation p.A489V 0.28 tolerated(0.11) probably_damaging(0.984) TCGA-F5-6814-01 2 211018713 211018713 C A KANSL1L Missense_Mutation p.K198N 0.38 tolerated(0.11) benign(0.046) TCGA-F5-6814-01 2 211018779 211018779 C A KANSL1L Missense_Mutation p.E176D 0.32 deleterious(0) benign(0.131) TCGA-F5-6814-01 2 211070387 211070387 C T ACADL Missense_Mutation p.R246Q 0.19 tolerated(0.11) benign(0.004) TCGA-F5-6814-01 2 211070455 211070455 A G ACADL Silent p.A223A 0.10 TCGA-F5-6814-01 2 211515153 211515153 A C CPS1 Missense_Mutation p.R1163S 0.25 tolerated(0.68) benign(0.228) TCGA-F5-6814-01 2 211523339 211523339 G A CPS1 Missense_Mutation p.R1234Q 0.46 tolerated(0.18) benign(0.027) TCGA-F5-6814-01 2 21225705 21225705 G T APOB Missense_Mutation p.L4197M 0.41 probably_damaging(0.981) TCGA-F5-6814-01 2 21226034 21226034 T A APOB Missense_Mutation p.K4087M 0.24 probably_damaging(0.956) TCGA-F5-6814-01 2 212288937 212288937 C A ERBB4 Nonsense_Mutation p.E937* 0.27 TCGA-F5-6814-01 2 21230295 21230295 C A APOB Missense_Mutation p.D3149Y 0.30 possibly_damaging(0.886) TCGA-F5-6814-01 2 21231981 21231981 C G APOB Missense_Mutation p.V2587L 0.31 benign(0.184) TCGA-F5-6814-01 2 21233873 21233873 G T APOB Missense_Mutation p.S1956Y 0.23 benign(0.003) TCGA-F5-6814-01 2 21234117 21234117 G A APOB Silent p.L1875L 0.20 TCGA-F5-6814-01 2 21241949 21241949 C T APOB Silent p.E1012E 0.49 TCGA-F5-6814-01 2 21247897 21247897 C A APOB Nonsense_Mutation p.E782* 0.15 TCGA-F5-6814-01 2 21265318 21265318 T C APOB Missense_Mutation p.K51R 0.19 possibly_damaging(0.556) TCGA-F5-6814-01 2 212812247 212812247 A C ERBB4 Missense_Mutation p.L110R 0.15 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 2 213878604 213878604 G T IKZF2 Missense_Mutation p.S256Y 0.47 deleterious(0.04) possibly_damaging(0.534) TCGA-F5-6814-01 2 214014885 214014885 G T IKZF2 Intron 0.36 TCGA-F5-6814-01 2 215802240 215802240 G T ABCA12 Nonsense_Mutation p.Y2512* 0.51 TCGA-F5-6814-01 2 215840758 215840758 T G ABCA12 Missense_Mutation p.K1711T 0.38 tolerated(0.15) possibly_damaging(0.722) TCGA-F5-6814-01 2 215846946 215846946 C T ABCA12 Missense_Mutation p.R1515Q 0.33 deleterious(0) possibly_damaging(0.631) TCGA-F5-6814-01 2 215876292 215876292 T G ABCA12 Missense_Mutation p.T735P 0.20 tolerated(0.07) benign(0.421) TCGA-F5-6814-01 2 215880312 215880312 C A ABCA12 Nonsense_Mutation p.E620* 0.21 TCGA-F5-6814-01 2 215914502 215914502 G A ABCA12 Nonsense_Mutation p.R181* 0.23 TCGA-F5-6814-01 2 215928927 215928927 C T ABCA12 Missense_Mutation p.R60Q 0.35 deleterious(0) probably_damaging(0.943) TCGA-F5-6814-01 2 216203538 216203538 C T ATIC Nonsense_Mutation p.R379* 0.19 TCGA-F5-6814-01 2 216226288 216226288 G T FN1 Missense_Mutation p.S2475Y 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.771) TCGA-F5-6814-01 2 217347554 217347554 G C SMARCAL1 Missense_Mutation p.D907H 0.15 deleterious(0) possibly_damaging(0.873) TCGA-F5-6814-01 2 217541569 217541569 A C IGFBP5 Missense_Mutation p.W242G 0.13 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 218669156 218669156 C T TNS1 3'UTR 0.09 TCGA-F5-6814-01 2 218759744 218759744 C T TNS1 Silent p.T68T 0.47 TCGA-F5-6814-01 2 218954053 218954053 C A RUFY4 Silent p.I547I 0.29 TCGA-F5-6814-01 2 218954950 218954950 C A RUFY4 3'UTR 0.33 TCGA-F5-6814-01 2 219000016 219000016 C A CXCR2 Missense_Mutation p.F164L 0.24 tolerated(0.08) probably_damaging(0.989) TCGA-F5-6814-01 2 219000192 219000192 C A CXCR2 Missense_Mutation p.P223Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 219001644 219001644 C A CXCR2 3'UTR 0.24 TCGA-F5-6814-01 2 219001864 219001864 T C CXCR2 3'UTR 0.50 TCGA-F5-6814-01 2 219258849 219258849 T C SLC11A1 Missense_Mutation p.F441L 0.21 deleterious(0.01) benign(0.077) TCGA-F5-6814-01 2 219314038 219314038 G T VIL1 Missense_Mutation p.K821N 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 219527284 219527284 G A BCS1L Silent p.T257T 0.16 TCGA-F5-6814-01 2 219529069 219529069 C T RNF25 Missense_Mutation p.E331K 0.36 tolerated(0.17) benign(0.027) TCGA-F5-6814-01 2 219561815 219561815 T C STK36 Silent p.V880V 0.43 TCGA-F5-6814-01 2 219563335 219563335 A G STK36 Missense_Mutation p.Y1023C 0.30 tolerated(0.1) benign(0.375) TCGA-F5-6814-01 2 219566832 219566832 A C STK36 3'UTR 0.25 TCGA-F5-6814-01 2 219603079 219603079 G T TTLL4 Missense_Mutation p.S227I 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6814-01 2 219691769 219691769 A C PRKAG3 Missense_Mutation p.D350E 0.15 tolerated(1) benign(0.011) TCGA-F5-6814-01 2 219900154 219900154 C T CCDC108 Intron 0.34 TCGA-F5-6814-01 2 220011457 220011457 C T NHEJ1 Missense_Mutation p.R178Q 0.36 deleterious(0) benign(0.093) TCGA-F5-6814-01 2 220080810 220080810 C T ABCB6 Missense_Mutation p.E355K 0.21 tolerated(0.17) benign(0.029) TCGA-F5-6814-01 2 220097325 220097325 T C ANKZF1 Missense_Mutation p.F160L 0.24 tolerated(0.65) benign(0.03) TCGA-F5-6814-01 2 220102384 220102384 T G GLB1L Missense_Mutation p.K513N 0.35 tolerated(0.57) benign(0.002) TCGA-F5-6814-01 2 220103063 220103063 C T GLB1L Missense_Mutation p.R417Q 0.30 tolerated(0.07) benign(0.161) TCGA-F5-6814-01 2 220162055 220162055 T C PTPRN Missense_Mutation p.D663G 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 220162057 220162057 G A PTPRN Silent p.S662S 0.40 TCGA-F5-6814-01 2 220166365 220166365 G T PTPRN Silent p.L357L 0.29 TCGA-F5-6814-01 2 220195526 220195526 A C RESP18 Missense_Mutation p.L102V 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.805) TCGA-F5-6814-01 2 220197896 220197896 C T RESP18 Missense_Mutation p.A2T 0.35 tolerated_low_confidence(0.12) possibly_damaging(0.682) TCGA-F5-6814-01 2 220379282 220379282 G A ASIC4 Missense_Mutation p.D73N 0.38 deleterious_low_confidence(0) benign(0.004) TCGA-F5-6814-01 2 220379636 220379636 G A ASIC4 Missense_Mutation p.G191R 0.60 tolerated(0.14) probably_damaging(0.997) TCGA-F5-6814-01 2 220424173 220424173 G A OBSL1 Silent p.I1000I 0.23 TCGA-F5-6814-01 2 220432603 220432603 G A OBSL1 Silent p.V457V 0.36 TCGA-F5-6814-01 2 222320365 222320365 G T EPHA4 Silent p.I539I 0.40 TCGA-F5-6814-01 2 222428676 222428676 A G EPHA4 Missense_Mutation p.F200L 0.33 deleterious(0) probably_damaging(0.95) TCGA-F5-6814-01 2 223169211 223169211 T G CCDC140 3'UTR 0.37 TCGA-F5-6814-01 2 223423443 223423443 A G SGPP2 Silent p.V342V 0.10 TCGA-F5-6814-01 2 223489197 223489197 C A FARSB Nonsense_Mutation p.E322* 0.42 TCGA-F5-6814-01 2 223919286 223919286 A G KCNE4 3'UTR 0.10 TCGA-F5-6814-01 2 223919375 223919375 C A KCNE4 3'UTR 0.28 TCGA-F5-6814-01 2 224463906 224463906 C A SCG2 Missense_Mutation p.R32I 0.21 tolerated(0.08) possibly_damaging(0.878) TCGA-F5-6814-01 2 224623297 224623297 T C AP1S3 3'UTR 0.41 TCGA-F5-6814-01 2 224842275 224842275 C T SERPINE2 Missense_Mutation p.R393Q 0.54 deleterious(0.05) probably_damaging(1) TCGA-F5-6814-01 2 224849630 224849630 G T SERPINE2 Missense_Mutation p.F253L 0.50 tolerated(0.05) benign(0.1) TCGA-F5-6814-01 2 225738844 225738844 G T DOCK10 Missense_Mutation p.L376I 0.38 tolerated(0.28) benign(0.001) TCGA-F5-6814-01 2 225739465 225739465 G A DOCK10 Missense_Mutation p.S312L 0.13 tolerated(0.3) benign(0.009) TCGA-F5-6814-01 2 225761083 225761083 A C DOCK10 Missense_Mutation p.F115L 0.26 tolerated(0.16) possibly_damaging(0.491) TCGA-F5-6814-01 2 225811565 225811565 G T DOCK10 Intron 0.20 TCGA-F5-6814-01 2 225811715 225811715 C T DOCK10 Intron 0.37 TCGA-F5-6814-01 2 226516245 226516245 G T NYAP2 Missense_Mutation p.Q642H 0.19 tolerated_low_confidence(0.07) possibly_damaging(0.795) TCGA-F5-6814-01 2 227872164 227872164 G T COL4A4 Missense_Mutation p.F1650L 0.09 unknown(0) TCGA-F5-6814-01 2 227966270 227966270 C A COL4A4 Nonsense_Mutation p.E327* 0.35 TCGA-F5-6814-01 2 228004944 228004944 T G COL4A4 Missense_Mutation p.K42T 0.27 probably_damaging(0.92) TCGA-F5-6814-01 2 228168598 228168598 C A COL4A3 Missense_Mutation p.L1327I 0.22 unknown(0) TCGA-F5-6814-01 2 228205093 228205093 C A MFF Missense_Mutation p.S172Y 0.56 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 2 228563473 228563473 C A SLC19A3 Nonsense_Mutation p.E320* 0.38 TCGA-F5-6814-01 2 228736445 228736445 G A DAW1 Missense_Mutation p.G14R 0.40 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 2 228756018 228756018 A C DAW1 Missense_Mutation p.K102N 0.27 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 228996774 228996774 G A SPHKAP Silent p.D20D 0.29 TCGA-F5-6814-01 2 230223207 230223207 T G DNER 3'UTR 0.19 TCGA-F5-6814-01 2 230632316 230632316 A C TRIP12 Missense_Mutation p.L1978R 0.10 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 230643282 230643282 T G TRIP12 Missense_Mutation p.Y1669S 0.42 tolerated(0.06) probably_damaging(0.998) TCGA-F5-6814-01 2 230662539 230662539 A C TRIP12 Missense_Mutation p.I1089S 0.12 deleterious(0) possibly_damaging(0.63) TCGA-F5-6814-01 2 230683225 230683225 G A TRIP12 Missense_Mutation p.S437F 0.11 deleterious(0) probably_damaging(0.921) TCGA-F5-6814-01 2 230695546 230695546 G A TRIP12 Intron 0.42 TCGA-F5-6814-01 2 230705627 230705627 C T TRIP12 Silent p.T306T 0.32 TCGA-F5-6814-01 2 230723545 230723545 A G TRIP12 Missense_Mutation p.S282P 0.13 deleterious_low_confidence(0.01) benign(0.188) TCGA-F5-6814-01 2 230902145 230902145 C A SLC16A14 Missense_Mutation p.R495L 0.09 tolerated(0.12) benign(0.262) TCGA-F5-6814-01 2 231033876 231033876 A C SP110 Missense_Mutation p.H702Q 0.31 tolerated(0.75) benign(0.402) TCGA-F5-6814-01 2 231033902 231033902 C A SP110 Missense_Mutation p.D694Y 0.43 deleterious(0) probably_damaging(0.934) TCGA-F5-6814-01 2 231041415 231041415 C A SP110 Intron 0.29 TCGA-F5-6814-01 2 231072770 231072770 C A SP110 Missense_Mutation p.K278N 0.09 deleterious(0.01) benign(0.023) TCGA-F5-6814-01 2 231074708 231074708 G T SP110 Missense_Mutation p.S256Y 0.22 deleterious(0.02) benign(0.144) TCGA-F5-6814-01 2 231081584 231081584 T G SP110 Missense_Mutation p.K20T 0.12 deleterious(0) possibly_damaging(0.607) TCGA-F5-6814-01 2 231155181 231155181 G T SP140 Missense_Mutation p.R576I 0.12 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 2 231175895 231175895 C A SP140 Silent p.V770V 0.13 TCGA-F5-6814-01 2 231176187 231176187 C A SP140 Silent p.G794G 0.17 TCGA-F5-6814-01 2 231188 231188 A C SH3YL1 Missense_Mutation p.F179L 0.19 tolerated(0.55) possibly_damaging(0.734) TCGA-F5-6814-01 2 231226364 231226364 C T SP140L Nonsense_Mutation p.R159* 0.36 TCGA-F5-6814-01 2 231313824 231313824 G A SP100 Missense_Mutation p.R182Q 0.23 tolerated(0.39) benign(0) TCGA-F5-6814-01 2 231379861 231379861 T G SP100 Intron 0.25 TCGA-F5-6814-01 2 231405651 231405651 C A SP100 Missense_Mutation p.S757R 0.18 deleterious(0.03) possibly_damaging(0.504) TCGA-F5-6814-01 2 231655632 231655632 C A CAB39 Missense_Mutation p.L54M 0.27 deleterious(0.03) possibly_damaging(0.838) TCGA-F5-6814-01 2 231738228 231738228 G A ITM2C Missense_Mutation p.V73M 0.35 deleterious(0) possibly_damaging(0.751) TCGA-F5-6814-01 2 231941850 231941850 G A PSMD1 Missense_Mutation p.D349N 0.37 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 2 231973443 231973443 A C HTR2B Missense_Mutation p.S412A 0.15 tolerated(0.22) benign(0.036) TCGA-F5-6814-01 2 232026174 232026174 C A PSMD1 Nonsense_Mutation p.S780* 0.36 TCGA-F5-6814-01 2 232035423 232035423 T G PSMD1 Missense_Mutation p.D953E 0.42 tolerated_low_confidence(0.24) benign(0) TCGA-F5-6814-01 2 232104742 232104742 G A ARMC9 Silent p.T289T 0.47 TCGA-F5-6814-01 2 232373905 232373905 C A LINC00471 RNA 0.28 TCGA-F5-6814-01 2 233194526 233194526 C T DIS3L2 Silent p.L581L 0.41 TCGA-F5-6814-01 2 233194538 233194538 C A DIS3L2 Missense_Mutation p.F585L 0.33 tolerated(0.09) benign(0.424) TCGA-F5-6814-01 2 233273412 233273412 A T ALPPL2 Splice_Site p.X286_splice 0.24 TCGA-F5-6814-01 2 233406099 233406099 C T CHRNG Silent p.F122F 0.36 TCGA-F5-6814-01 2 233412831 233412831 C T TIGD1 Missense_Mutation p.E588K 0.44 deleterious_low_confidence(0.04) benign(0.001) TCGA-F5-6814-01 2 233527458 233527458 C T EFHD1 Intron 0.50 TCGA-F5-6814-01 2 233633473 233633473 G A KCNJ13 Missense_Mutation p.R171C 0.19 deleterious(0.03) possibly_damaging(0.462) TCGA-F5-6814-01 2 233697718 233697718 A G GIGYF2 Missense_Mutation p.E915G 0.19 unknown(0) TCGA-F5-6814-01 2 234078674 234078674 G A INPP5D Missense_Mutation p.R540Q 0.33 deleterious(0) probably_damaging(0.927) TCGA-F5-6814-01 2 234235841 234235841 G T SAG Missense_Mutation p.K170N 0.21 deleterious(0) possibly_damaging(0.825) TCGA-F5-6814-01 2 234343045 234343045 A C DGKD Missense_Mutation p.K123T 0.10 tolerated(0.09) benign(0.201) TCGA-F5-6814-01 2 234545590 234545590 C A UGT1A10 Missense_Mutation p.S141Y 0.46 deleterious(0.03) probably_damaging(0.934) TCGA-F5-6814-01 2 234581004 234581004 T G UGT1A9 Missense_Mutation p.F142V 0.23 deleterious(0) possibly_damaging(0.904) TCGA-F5-6814-01 2 234581206 234581206 A G UGT1A9 Missense_Mutation p.N209S 0.12 deleterious(0.02) probably_damaging(0.926) TCGA-F5-6814-01 2 234676989 234676989 G A UGT1A10 Missense_Mutation p.R400H 0.25 tolerated(0.13) probably_damaging(1) TCGA-F5-6814-01 2 234746211 234746211 G A HJURP 3'UTR 0.46 TCGA-F5-6814-01 2 234846106 234846106 G A TRPM8 Missense_Mutation p.D101N 0.13 tolerated(0.06) probably_damaging(0.998) TCGA-F5-6814-01 2 234863832 234863832 C T TRPM8 Silent p.L434L 0.19 TCGA-F5-6814-01 2 234878984 234878984 C A TRPM8 Missense_Mutation p.L757I 0.41 tolerated(0.06) probably_damaging(0.994) TCGA-F5-6814-01 2 234905084 234905084 C T TRPM8 Silent p.F1018F 0.41 TCGA-F5-6814-01 2 234925959 234925959 C T TRPM8 3'UTR 0.43 TCGA-F5-6814-01 2 234975920 234975920 T A SPP2 Splice_Site p.X184_splice 0.55 TCGA-F5-6814-01 2 234978635 234978635 G T SPP2 Missense_Mutation p.R205I 0.23 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-F5-6814-01 2 235943604 235943604 A C SH3BP4 5'UTR 0.21 TCGA-F5-6814-01 2 236792017 236792017 C T AGAP1 Missense_Mutation p.S360L 0.32 deleterious(0) possibly_damaging(0.82) TCGA-F5-6814-01 2 237033697 237033697 C T AGAP1 3'UTR 0.33 TCGA-F5-6814-01 2 237327809 237327809 T C IQCA1 Missense_Mutation p.T373A 0.19 tolerated(0.4) benign(0.001) TCGA-F5-6814-01 2 237489508 237489508 T G ACKR3 Missense_Mutation p.F134V 0.29 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 238244907 238244907 C A COL6A3 Missense_Mutation p.A2946S 0.43 unknown(0) TCGA-F5-6814-01 2 238253091 238253091 G T COL6A3 Missense_Mutation p.P2524T 0.24 unknown(0) TCGA-F5-6814-01 2 238277647 238277647 C A COL6A3 Nonsense_Mutation p.E1487* 0.37 TCGA-F5-6814-01 2 238303336 238303336 C A COL6A3 Missense_Mutation p.E201D 0.23 probably_damaging(0.988) TCGA-F5-6814-01 2 238303794 238303794 T C COL6A3 Missense_Mutation p.T49A 0.35 benign(0.105) TCGA-F5-6814-01 2 238629434 238629434 G A LRRFIP1 Missense_Mutation p.R73H 0.12 deleterious(0.03) probably_damaging(0.953) TCGA-F5-6814-01 2 238672840 238672840 C A LRRFIP1 3'UTR 0.29 TCGA-F5-6814-01 2 238725832 238725832 G T RBM44 Missense_Mutation p.E91D 0.43 tolerated(0.41) benign(0.045) TCGA-F5-6814-01 2 238726038 238726038 G T RBM44 Missense_Mutation p.R160I 0.26 tolerated(0.05) probably_damaging(0.943) TCGA-F5-6814-01 2 238726268 238726268 C T RBM44 Missense_Mutation p.R237C 0.40 deleterious(0) possibly_damaging(0.471) TCGA-F5-6814-01 2 240016640 240016640 G A HDAC4 Intron 0.38 TCGA-F5-6814-01 2 240274425 240274425 C T HDAC4 5'UTR 0.68 TCGA-F5-6814-01 2 240960745 240960745 C T NDUFA10 Missense_Mutation p.G110D 0.41 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 2 240984699 240984699 G T OR6B3 Missense_Mutation p.A264D 0.09 deleterious(0.03) probably_damaging(0.984) TCGA-F5-6814-01 2 241405549 241405549 A C GPC1 Missense_Mutation p.S507R 0.12 tolerated(0.06) possibly_damaging(0.526) TCGA-F5-6814-01 2 241465809 241465809 C T ANKMY1 Missense_Mutation p.R247H 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 241517078 241517078 C T RNPEPL1 Silent p.F418F 0.18 TCGA-F5-6814-01 2 241658608 241658608 C A KIF1A Missense_Mutation p.V1677F 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 241903130 241903130 T G AC104809.3 Missense_Mutation p.L976R 0.40 deleterious(0.04) probably_damaging(0.998) TCGA-F5-6814-01 2 241991276 241991276 C T SNED1 Silent p.I617I 0.26 TCGA-F5-6814-01 2 242011286 242011286 G T SNED1 Silent p.V1270V 0.17 TCGA-F5-6814-01 2 242012653 242012653 C T SNED1 Intron 0.36 TCGA-F5-6814-01 2 242054518 242054518 G A PASK Silent p.F1091F 0.34 TCGA-F5-6814-01 2 242054767 242054767 T G PASK Missense_Mutation p.K1045T 0.09 tolerated(0.19) benign(0.011) TCGA-F5-6814-01 2 242082426 242082426 C T PASK Missense_Mutation p.A8T 0.30 deleterious_low_confidence(0.05) possibly_damaging(0.625) TCGA-F5-6814-01 2 242099822 242099822 C A PPP1R7 Missense_Mutation p.F170L 0.40 deleterious(0.01) possibly_damaging(0.877) TCGA-F5-6814-01 2 242149951 242149951 C A ANO7 Silent p.I563I 0.15 TCGA-F5-6814-01 2 242187675 242187675 C T HDLBP Missense_Mutation p.R534H 0.24 deleterious(0.04) possibly_damaging(0.819) TCGA-F5-6814-01 2 242202179 242202179 G A HDLBP Silent p.L133L 0.12 TCGA-F5-6814-01 2 242202340 242202340 A C HDLBP Missense_Mutation p.V79G 0.09 deleterious(0) possibly_damaging(0.862) TCGA-F5-6814-01 2 242206277 242206277 G A HDLBP Missense_Mutation p.S3F 0.41 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 2 242437748 242437748 C T STK25 Missense_Mutation p.D312N 0.29 tolerated(0.31) benign(0.001) TCGA-F5-6814-01 2 24244783 24244783 G A MFSD2B Silent p.R279R 0.54 TCGA-F5-6814-01 2 24261469 24261469 G T C2orf44 Missense_Mutation p.S299Y 0.16 deleterious(0) possibly_damaging(0.861) TCGA-F5-6814-01 2 242755724 242755724 C T NEU4 Missense_Mutation p.R28W 0.25 deleterious(0) probably_damaging(0.951) TCGA-F5-6814-01 2 24277360 24277360 C A FKBP1B Intron 0.12 TCGA-F5-6814-01 2 24358040 24358040 G T FAM228B Nonsense_Mutation p.E51* 0.33 TCGA-F5-6814-01 2 24384444 24384444 T G FAM228B Missense_Mutation p.L252R 0.42 deleterious(0) possibly_damaging(0.804) TCGA-F5-6814-01 2 24392337 24392337 G T FAM228B 3'UTR 0.27 TCGA-F5-6814-01 2 24395443 24395443 C T FAM228A 5'Flank 0.24 TCGA-F5-6814-01 2 24426614 24426614 G A ITSN2 Nonsense_Mutation p.R1659* 0.28 TCGA-F5-6814-01 2 24432766 24432766 A G ITSN2 Missense_Mutation p.V1465A 0.11 tolerated(0.49) unknown(0) TCGA-F5-6814-01 2 24888725 24888725 A C NCOA1 Missense_Mutation p.K66T 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 24929930 24929930 C T NCOA1 Nonsense_Mutation p.R531* 0.19 TCGA-F5-6814-01 2 25022572 25022572 G T CENPO Missense_Mutation p.E25D 0.52 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 2 25044456 25044456 G A ADCY3 Silent p.F1019F 0.36 TCGA-F5-6814-01 2 25048919 25048919 G A ADCY3 Missense_Mutation p.R858C 0.39 deleterious(0) probably_damaging(0.932) TCGA-F5-6814-01 2 25383941 25383941 G A POMC 3'UTR 0.48 TCGA-F5-6814-01 2 25459818 25459818 C T DNMT3A Missense_Mutation p.G822D 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 2 25467501 25467501 C T DNMT3A Silent p.A525A 0.55 TCGA-F5-6814-01 2 25851158 25851158 C T DTNB Missense_Mutation p.E82K 0.49 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 2 26204672 26204672 G A KIF3C Silent p.L39L 0.31 TCGA-F5-6814-01 2 262602 262602 G T SH3YL1 Intron 0.09 TCGA-F5-6814-01 2 26414487 26414487 C T HADHA Missense_Mutation p.E671K 0.11 deleterious(0.02) benign(0.07) TCGA-F5-6814-01 2 26457164 26457164 C A HADHA Missense_Mutation p.R125I 0.11 tolerated(0.09) benign(0.148) TCGA-F5-6814-01 2 26538563 26538563 T C GPR113 Missense_Mutation p.D250G 0.11 tolerated(0.07) benign(0.114) TCGA-F5-6814-01 2 26637277 26637277 A C DRC1 Missense_Mutation p.K74T 0.26 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 2 26700748 26700748 G T OTOF Intron 0.38 TCGA-F5-6814-01 2 26760614 26760614 C A OTOF Missense_Mutation p.E36D 0.45 tolerated(0.08) benign(0.072) TCGA-F5-6814-01 2 26818150 26818150 G T CIB4 Missense_Mutation p.F74L 0.46 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 27001097 27001097 C T SLC35F6 Silent p.F278F 0.23 TCGA-F5-6814-01 2 27001109 27001109 C T SLC35F6 Silent p.S282S 0.21 TCGA-F5-6814-01 2 27247103 27247103 C T MAPRE3 Missense_Mutation p.A136V 0.10 tolerated(0.29) benign(0.004) TCGA-F5-6814-01 2 27256984 27256984 C A TMEM214 Silent p.I67I 0.20 TCGA-F5-6814-01 2 27282090 27282090 T C AGBL5 Missense_Mutation p.L636S 0.28 deleterious_low_confidence(0) benign(0.424) TCGA-F5-6814-01 2 27308861 27308861 A G EMILIN1 Missense_Mutation p.D1010G 0.20 possibly_damaging(0.533) TCGA-F5-6814-01 2 27351467 27351467 G A ABHD1 Silent p.Q91Q 0.24 TCGA-F5-6814-01 2 27355752 27355752 C T PREB Missense_Mutation p.E196K 0.22 tolerated(0.72) benign(0.014) TCGA-F5-6814-01 2 27361497 27361497 C A C2orf53 5'UTR 0.36 TCGA-F5-6814-01 2 27429369 27429369 A G SLC5A6 Missense_Mutation p.S165P 0.39 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 2 27535604 27535604 A G MPV17 Silent p.D74D 0.07 TCGA-F5-6814-01 2 27595595 27595595 T G SNX17 Missense_Mutation p.Y82D 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 27668812 27668812 A C IFT172 Missense_Mutation p.F1600C 0.36 deleterious(0) probably_damaging(0.967) TCGA-F5-6814-01 2 27672387 27672387 C A IFT172 Missense_Mutation p.K1401N 0.33 tolerated(0.06) possibly_damaging(0.851) TCGA-F5-6814-01 2 27688653 27688653 T C IFT172 Missense_Mutation p.I597V 0.44 tolerated(0.25) benign(0.254) TCGA-F5-6814-01 2 277057 277057 A C ACP1 Missense_Mutation p.K124T 0.10 tolerated(0.14) possibly_damaging(0.561) TCGA-F5-6814-01 2 27719784 27719784 A G GCKR Missense_Mutation p.K5E 0.33 deleterious(0.01) possibly_damaging(0.858) TCGA-F5-6814-01 2 27800076 27800076 G A C2orf16 Missense_Mutation p.V213I 0.31 tolerated(0.2) benign(0.139) TCGA-F5-6814-01 2 27803900 27803900 G T C2orf16 Missense_Mutation p.K1487N 0.15 deleterious(0.03) benign(0.331) TCGA-F5-6814-01 2 27803940 27803940 A C C2orf16 Missense_Mutation p.K1501Q 0.26 tolerated(0.07) unknown(0) TCGA-F5-6814-01 2 27805358 27805358 A C C2orf16 Missense_Mutation p.K1973N 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-F5-6814-01 2 27822893 27822893 C T ZNF512 Missense_Mutation p.R144W 0.28 deleterious(0) possibly_damaging(0.523) TCGA-F5-6814-01 2 28032868 28032868 C A RBKS Intron 0.44 TCGA-F5-6814-01 2 28070951 28070951 G T RBKS Missense_Mutation p.S79Y 0.43 tolerated(0.75) possibly_damaging(0.892) TCGA-F5-6814-01 2 28081357 28081357 G A RBKS Silent p.N57N 0.49 TCGA-F5-6814-01 2 28865748 28865748 C T PLB1 Missense_Mutation p.R1400W 0.24 deleterious(0.02) benign(0.009) TCGA-F5-6814-01 2 29006839 29006839 A C PPP1CB Missense_Mutation p.D196A 0.10 deleterious_low_confidence(0) benign(0.312) TCGA-F5-6814-01 2 29063348 29063348 A G SPDYA Intron 0.23 TCGA-F5-6814-01 2 29063375 29063375 T C SPDYA Intron 0.49 TCGA-F5-6814-01 2 29093099 29093099 C T TRMT61B Silent p.R15R 0.52 TCGA-F5-6814-01 2 29222276 29222276 G T FAM179A Missense_Mutation p.Q123H 0.35 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 2 29259448 29259448 G T FAM179A Missense_Mutation p.K820N 0.43 deleterious(0) probably_damaging(0.963) TCGA-F5-6814-01 2 29287834 29287834 G T C2orf71 Missense_Mutation p.F1256L 0.21 tolerated(1) benign(0) TCGA-F5-6814-01 2 29294822 29294822 G A C2orf71 Missense_Mutation p.P769L 0.22 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 29368179 29368179 A C CLIP4 Missense_Mutation p.K323Q 0.42 deleterious(0) possibly_damaging(0.765) TCGA-F5-6814-01 2 29404766 29404766 A C CLIP4 3'UTR 0.40 TCGA-F5-6814-01 2 29455223 29455223 C A ALK Missense_Mutation p.R860I 0.16 deleterious(0) possibly_damaging(0.819) TCGA-F5-6814-01 2 29606679 29606679 G A ALK Nonsense_Mutation p.R401* 0.35 TCGA-F5-6814-01 2 29754981 29754981 G A ALK Silent p.G318G 0.41 TCGA-F5-6814-01 2 30480466 30480466 G A LBH Silent p.A99A 0.35 TCGA-F5-6814-01 2 31423364 31423364 C T CAPN14 Missense_Mutation p.E227K 0.12 tolerated(0.1) benign(0) TCGA-F5-6814-01 2 31609390 31609390 C T XDH Missense_Mutation p.R228Q 0.49 tolerated(0.3) benign(0.011) TCGA-F5-6814-01 2 32366974 32366974 C T SPAST Missense_Mutation p.R499C 0.37 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 2 32419009 32419009 G A SLC30A6 Silent p.T191T 0.11 TCGA-F5-6814-01 2 32475241 32475241 C A NLRC4 Missense_Mutation p.E564D 0.47 deleterious(0.03) possibly_damaging(0.851) TCGA-F5-6814-01 2 32476391 32476391 C T NLRC4 Missense_Mutation p.R181Q 0.19 tolerated(0.22) benign(0.093) TCGA-F5-6814-01 2 32641017 32641017 G T BIRC6 Missense_Mutation p.K886N 0.40 benign(0.001) TCGA-F5-6814-01 2 32660598 32660598 G A BIRC6 Silent p.P1148P 0.27 TCGA-F5-6814-01 2 32692710 32692710 A G BIRC6 Missense_Mutation p.E1825G 0.33 probably_damaging(0.986) TCGA-F5-6814-01 2 32718650 32718650 G A BIRC6 Missense_Mutation p.R2795Q 0.09 probably_damaging(0.984) TCGA-F5-6814-01 2 32724866 32724866 A G BIRC6 Silent p.K2907K 0.34 TCGA-F5-6814-01 2 32733144 32733144 A C BIRC6 Missense_Mutation p.K3266N 0.09 probably_damaging(0.957) TCGA-F5-6814-01 2 32733163 32733163 G A BIRC6 Missense_Mutation p.E3273K 0.09 possibly_damaging(0.846) TCGA-F5-6814-01 2 32754802 32754802 T A BIRC6 Missense_Mutation p.I4002K 0.43 benign(0.35) TCGA-F5-6814-01 2 32774537 32774537 G A BIRC6 Missense_Mutation p.R4378Q 0.34 probably_damaging(0.99) TCGA-F5-6814-01 2 33741645 33741645 G T RASGRP3 Missense_Mutation p.R36I 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 2 3405579 3405579 T C TRAPPC12 Missense_Mutation p.F360S 0.26 deleterious(0.02) benign(0.436) TCGA-F5-6814-01 2 36982101 36982101 C T VIT Missense_Mutation p.R105W 0.22 deleterious(0) possibly_damaging(0.888) TCGA-F5-6814-01 2 36986352 36986352 C A VIT Intron 0.46 TCGA-F5-6814-01 2 36994272 36994272 C A VIT Missense_Mutation p.P175T 0.25 tolerated(0.19) benign(0.03) TCGA-F5-6814-01 2 36994375 36994375 C A VIT Missense_Mutation p.S209Y 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.583) TCGA-F5-6814-01 2 37082398 37082398 T G STRN Missense_Mutation p.E645D 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-F5-6814-01 2 37111091 37111091 A C STRN Missense_Mutation p.I390M 0.29 tolerated(0.25) benign(0.005) TCGA-F5-6814-01 2 3721664 3721664 G T ALLC Splice_Site p.X12_splice 0.23 TCGA-F5-6814-01 2 37458878 37458878 G A NDUFAF7 Silent p.G10G 0.18 TCGA-F5-6814-01 2 37502926 37502926 C T PRKD3 Missense_Mutation p.G453E 0.34 tolerated(0.05) benign(0.228) TCGA-F5-6814-01 2 38178835 38178835 C T RMDN2 Silent p.I159I 0.25 TCGA-F5-6814-01 2 38178836 38178836 G A RMDN2 Missense_Mutation p.E160K 0.49 tolerated_low_confidence(0.34) benign(0.002) TCGA-F5-6814-01 2 38244566 38244566 G T RMDN2 Intron 0.57 TCGA-F5-6814-01 2 38298119 38298119 C A CYP1B1 Missense_Mutation p.V460L 0.21 deleterious(0) possibly_damaging(0.685) TCGA-F5-6814-01 2 38800541 38800541 T C HNRNPLL Silent p.P296P 0.15 TCGA-F5-6814-01 2 38893388 38893388 T G GALM Missense_Mutation p.L29V 0.10 tolerated(0.92) benign(0.007) TCGA-F5-6814-01 2 39025101 39025101 G T DHX57 3'UTR 0.34 TCGA-F5-6814-01 2 39075439 39075439 A C DHX57 Missense_Mutation p.F712L 0.09 deleterious(0.02) benign(0.077) TCGA-F5-6814-01 2 39082296 39082296 C T DHX57 Missense_Mutation p.R603Q 0.21 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 39109639 39109639 T G MORN2 Missense_Mutation p.L75V 0.16 tolerated(0.28) benign(0.293) TCGA-F5-6814-01 2 39156066 39156066 G A ARHGEF33 Missense_Mutation p.E32K 0.24 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 2 39156904 39156904 G T ARHGEF33 Nonsense_Mutation p.E99* 0.43 TCGA-F5-6814-01 2 39162977 39162977 T C ARHGEF33 Splice_Site p.X189_splice 0.06 TCGA-F5-6814-01 2 39187333 39187333 C T AC019171.1 Missense_Mutation p.V51I 0.75 benign(0.205) TCGA-F5-6814-01 2 39193284 39193284 G T ARHGEF33 Missense_Mutation p.K827N 0.17 deleterious(0) possibly_damaging(0.895) TCGA-F5-6814-01 2 39234281 39234281 A C SOS1 Missense_Mutation p.I855S 0.33 tolerated(0.07) possibly_damaging(0.607) TCGA-F5-6814-01 2 39237759 39237759 G A SOS1 Nonsense_Mutation p.R826* 0.12 TCGA-F5-6814-01 2 39406027 39406027 G T CDKL4 3'UTR 0.52 TCGA-F5-6814-01 2 39453017 39453017 G T CDKL4 Missense_Mutation p.H85N 0.18 tolerated(0.09) benign(0.123) TCGA-F5-6814-01 2 39519942 39519942 C A MAP4K3 Missense_Mutation p.D415Y 0.09 deleterious(0.02) possibly_damaging(0.526) TCGA-F5-6814-01 2 39931278 39931278 G A TMEM178A Missense_Mutation p.R153Q 0.46 deleterious(0.01) possibly_damaging(0.87) TCGA-F5-6814-01 2 40366764 40366764 G A SLC8A1 Silent p.F774F 0.15 TCGA-F5-6814-01 2 40656704 40656704 G T SLC8A1 Missense_Mutation p.F239L 0.17 tolerated(0.92) benign(0.051) TCGA-F5-6814-01 2 40656709 40656709 T C SLC8A1 Missense_Mutation p.T238A 0.40 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 40656744 40656744 G T SLC8A1 Missense_Mutation p.S226Y 0.39 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 2 42490427 42490427 G T EML4 Missense_Mutation p.V208F 0.11 deleterious(0.04) benign(0.008) TCGA-F5-6814-01 2 42580399 42580399 C A COX7A2L Missense_Mutation p.D53Y 0.27 deleterious(0.01) probably_damaging(0.936) TCGA-F5-6814-01 2 42836680 42836680 C A MTA3 Silent p.L91L 0.29 TCGA-F5-6814-01 2 43547636 43547636 G T THADA Missense_Mutation p.L1463I 0.36 tolerated(0.06) benign(0.049) TCGA-F5-6814-01 2 43625187 43625187 G A THADA Nonsense_Mutation p.R1384* 0.44 TCGA-F5-6814-01 2 43787378 43787378 A C THADA Missense_Mutation p.F820V 0.17 deleterious(0.03) benign(0.071) TCGA-F5-6814-01 2 43801476 43801476 A G THADA Silent p.T576T 0.11 TCGA-F5-6814-01 2 43817979 43817979 T G THADA Missense_Mutation p.K96Q 0.08 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 2 43933505 43933505 T C PLEKHH2 Missense_Mutation p.S591P 0.16 tolerated(0.12) benign(0.005) TCGA-F5-6814-01 2 43965538 43965538 C A PLEKHH2 Missense_Mutation p.S1001Y 0.34 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 2 43969961 43969961 C T PLEKHH2 Silent p.P1101P 0.46 TCGA-F5-6814-01 2 43984276 43984276 G A PLEKHH2 Missense_Mutation p.E1272K 0.20 tolerated(0.08) possibly_damaging(0.574) TCGA-F5-6814-01 2 44004040 44004040 T C DYNC2LI1 Splice_Site p.X42_splice 0.16 TCGA-F5-6814-01 2 44021602 44021602 T G DYNC2LI1 Missense_Mutation p.F109L 0.43 tolerated(1) benign(0.002) TCGA-F5-6814-01 2 44053645 44053645 T C ABCG5 Missense_Mutation p.D217G 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 44104775 44104775 G T ABCG8 Missense_Mutation p.R611I 0.35 tolerated(0.4) benign(0.002) TCGA-F5-6814-01 2 44153077 44153077 A C LRPPRC Silent p.S920S 0.20 TCGA-F5-6814-01 2 44502805 44502805 T C SLC3A1 Missense_Mutation p.L44P 0.19 tolerated(0.38) benign(0.001) TCGA-F5-6814-01 2 45235844 45235844 G A SIX2 Missense_Mutation p.R136C 0.48 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 45773968 45773968 C T SRBD1 Missense_Mutation p.V593I 0.29 tolerated(0.58) benign(0.063) TCGA-F5-6814-01 2 46739807 46739807 A G ATP6V1E2 Missense_Mutation p.M15T 0.33 deleterious(0.04) possibly_damaging(0.468) TCGA-F5-6814-01 2 46850921 46850921 G T CRIPT Missense_Mutation p.K52N 0.16 tolerated(0.23) benign(0.009) TCGA-F5-6814-01 2 46987060 46987060 C T SOCS5 Missense_Mutation p.S464L 0.24 tolerated(0.14) benign(0.122) TCGA-F5-6814-01 2 46988229 46988229 C A SOCS5 3'UTR 0.19 TCGA-F5-6814-01 2 46989452 46989452 A G SOCS5 3'UTR 0.40 TCGA-F5-6814-01 2 47314213 47314213 C T C2orf61 Silent p.P227P 0.39 TCGA-F5-6814-01 2 47643551 47643551 G T MSH2 Missense_Mutation p.K353N 0.30 tolerated(0.33) possibly_damaging(0.451) TCGA-F5-6814-01 2 48023116 48023116 G A MSH6 Missense_Mutation p.E181K 0.42 tolerated(1) possibly_damaging(0.472) TCGA-F5-6814-01 2 48033393 48033393 A C MSH6 Missense_Mutation p.K1233Q 0.34 tolerated(0.23) benign(0.099) TCGA-F5-6814-01 2 48046138 48046138 C A FBXO11 Missense_Mutation p.S626I 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 48718225 48718225 G A PPP1R21 Silent p.A505A 0.28 TCGA-F5-6814-01 2 48734522 48734522 G A PPP1R21 Missense_Mutation p.E695K 0.21 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 48742005 48742005 A C PPP1R21 3'UTR 0.55 TCGA-F5-6814-01 2 48809164 48809164 G A STON1-GTF2A1L Silent p.P464P 0.34 TCGA-F5-6814-01 2 48818815 48818815 T C STON1-GTF2A1L Missense_Mutation p.S652P 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 48914973 48914973 C A LHCGR Missense_Mutation p.D655Y 0.15 tolerated(0.13) benign(0.001) TCGA-F5-6814-01 2 48941156 48941156 G T LHCGR Missense_Mutation p.H192N 0.35 deleterious(0.03) benign(0.219) TCGA-F5-6814-01 2 49195948 49195948 G A FSHR Missense_Mutation p.S248L 0.41 deleterious(0.01) benign(0.02) TCGA-F5-6814-01 2 50463983 50463983 C T NRXN1 Missense_Mutation p.V1204I 0.34 tolerated(0.68) benign(0.005) TCGA-F5-6814-01 2 50724696 50724696 T A NRXN1 Missense_Mutation p.N925I 0.50 deleterious(0) probably_damaging(0.966) TCGA-F5-6814-01 2 50724747 50724747 T C NRXN1 Missense_Mutation p.H908R 0.13 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 2 50779970 50779970 G T NRXN1 Nonsense_Mutation p.S545* 0.15 TCGA-F5-6814-01 2 53897605 53897605 G T ASB3 3'UTR 0.44 TCGA-F5-6814-01 2 54001571 54001571 T G CHAC2 Missense_Mutation p.L155R 0.12 deleterious(0) possibly_damaging(0.667) TCGA-F5-6814-01 2 54080648 54080648 C T GPR75 Missense_Mutation p.E416K 0.24 deleterious(0.03) probably_damaging(0.997) TCGA-F5-6814-01 2 54081151 54081151 C T GPR75 Missense_Mutation p.R248K 0.10 tolerated(0.36) benign(0.036) TCGA-F5-6814-01 2 54081428 54081428 C T GPR75 Missense_Mutation p.A156T 0.54 tolerated(0.11) benign(0.022) TCGA-F5-6814-01 2 54081684 54081684 T C GPR75 Silent p.P70P 0.10 TCGA-F5-6814-01 2 54114544 54114544 C T PSME4 Silent p.S1527S 0.24 TCGA-F5-6814-01 2 54115019 54115019 T G PSME4 Missense_Mutation p.K1499T 0.30 deleterious(0.01) benign(0.23) TCGA-F5-6814-01 2 54123946 54123946 T C PSME4 Missense_Mutation p.E1228G 0.12 tolerated(0.34) benign(0.15) TCGA-F5-6814-01 2 54127040 54127040 C A PSME4 Nonsense_Mutation p.E1134* 0.30 TCGA-F5-6814-01 2 54587691 54587691 T G C2orf73 Missense_Mutation p.S286A 0.23 tolerated_low_confidence(0.24) benign(0.001) TCGA-F5-6814-01 2 54856613 54856613 C T SPTBN1 Missense_Mutation p.S781F 0.21 deleterious(0.02) possibly_damaging(0.866) TCGA-F5-6814-01 2 55056487 55056487 C A EML6 Silent p.I240I 0.36 TCGA-F5-6814-01 2 55179749 55179749 T G EML6 Missense_Mutation p.L1411R 0.20 deleterious(0.04) possibly_damaging(0.704) TCGA-F5-6814-01 2 55191215 55191215 G A EML6 Missense_Mutation p.E1751K 0.28 tolerated(0.09) probably_damaging(0.928) TCGA-F5-6814-01 2 55254181 55254181 T G RTN4 Missense_Mutation p.K352Q 0.45 tolerated(0.14) benign(0.011) TCGA-F5-6814-01 2 55473560 55473560 G A MTIF2 Missense_Mutation p.A340V 0.37 tolerated(0.3) possibly_damaging(0.546) TCGA-F5-6814-01 2 55522978 55522978 G T CCDC88A Missense_Mutation p.S1768Y 0.40 deleterious(0) possibly_damaging(0.753) TCGA-F5-6814-01 2 55536325 55536325 T G CCDC88A Missense_Mutation p.K1381T 0.26 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 55573445 55573445 G A CCDC88A Missense_Mutation p.R303C 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 55756108 55756108 G A CCDC104 Missense_Mutation p.R126Q 0.45 tolerated(0.05) benign(0.04) TCGA-F5-6814-01 2 55804470 55804470 T G SMEK2 Missense_Mutation p.K529N 0.19 tolerated(0.06) benign(0.309) TCGA-F5-6814-01 2 55825618 55825618 C A SMEK2 Missense_Mutation p.E285D 0.31 tolerated(0.25) benign(0.139) TCGA-F5-6814-01 2 55906872 55906872 T G PNPT1 Missense_Mutation p.E208D 0.09 tolerated(0.09) benign(0.17) TCGA-F5-6814-01 2 55906921 55906921 C T PNPT1 Missense_Mutation p.R192Q 0.18 deleterious(0.02) probably_damaging(0.969) TCGA-F5-6814-01 2 56097864 56097864 G T EFEMP1 Missense_Mutation p.F437L 0.31 deleterious(0) possibly_damaging(0.687) TCGA-F5-6814-01 2 5835176 5835176 C T SOX11 3'UTR 0.27 TCGA-F5-6814-01 2 58366945 58366945 T C VRK2 Missense_Mutation p.V334A 0.12 tolerated(0.82) benign(0.005) TCGA-F5-6814-01 2 5837712 5837712 C A SOX11 3'UTR 0.12 TCGA-F5-6814-01 2 58386947 58386947 G T VRK2 3'UTR 0.14 TCGA-F5-6814-01 2 5838839 5838839 G T SOX11 3'UTR 0.41 TCGA-F5-6814-01 2 5838949 5838949 G T SOX11 3'UTR 0.24 TCGA-F5-6814-01 2 5840844 5840844 C T SOX11 3'UTR 0.16 TCGA-F5-6814-01 2 5841130 5841130 C A SOX11 3'UTR 0.39 TCGA-F5-6814-01 2 61006849 61006849 T G PAPOLG Missense_Mutation p.L258V 0.20 deleterious(0.02) probably_damaging(0.935) TCGA-F5-6814-01 2 61018914 61018914 A C PAPOLG Missense_Mutation p.N472T 0.13 tolerated(0.07) benign(0.01) TCGA-F5-6814-01 2 61128173 61128173 G T REL Nonsense_Mutation p.E117* 0.33 TCGA-F5-6814-01 2 61149691 61149691 T G REL 3'UTR 0.45 TCGA-F5-6814-01 2 61275677 61275677 G A PEX13 Silent p.A328A 0.25 TCGA-F5-6814-01 2 61310373 61310373 C T KIAA1841 Missense_Mutation p.L272F 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 61415646 61415646 G T USP34 Missense_Mutation p.S3411Y 0.24 deleterious_low_confidence(0) benign(0.016) TCGA-F5-6814-01 2 61417743 61417743 G A USP34 Silent p.F3213F 0.25 TCGA-F5-6814-01 2 61448727 61448727 G T USP34 Missense_Mutation p.F2603L 0.29 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 2 61505526 61505526 C T USP34 Missense_Mutation p.R1770Q 0.13 tolerated(0.58) benign(0.003) TCGA-F5-6814-01 2 61715891 61715891 T G XPO1 Missense_Mutation p.K680Q 0.31 tolerated(0.36) benign(0.025) TCGA-F5-6814-01 2 61722679 61722679 G T XPO1 Missense_Mutation p.Q320K 0.46 deleterious(0.04) benign(0.39) TCGA-F5-6814-01 2 61725925 61725925 T G XPO1 Missense_Mutation p.E214D 0.12 tolerated(0.41) benign(0.004) TCGA-F5-6814-01 2 61726862 61726862 C T XPO1 Silent p.K192K 0.14 TCGA-F5-6814-01 2 62063209 62063209 C T FAM161A Missense_Mutation p.R596Q 0.38 tolerated(1) benign(0.009) TCGA-F5-6814-01 2 62065822 62065822 C A FAM161A Missense_Mutation p.K534N 0.19 deleterious(0) probably_damaging(0.951) TCGA-F5-6814-01 2 62066728 62066728 T G FAM161A Missense_Mutation p.K471Q 0.09 deleterious(0) probably_damaging(0.94) TCGA-F5-6814-01 2 62067109 62067109 C T FAM161A Missense_Mutation p.D344N 0.19 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 2 62067371 62067371 C A FAM161A Missense_Mutation p.M256I 0.25 tolerated(0.4) benign(0.037) TCGA-F5-6814-01 2 62067493 62067493 C A FAM161A Missense_Mutation p.D216Y 0.16 deleterious(0.01) possibly_damaging(0.88) TCGA-F5-6814-01 2 62069311 62069311 A C FAM161A Nonsense_Mutation p.L123* 0.21 TCGA-F5-6814-01 2 64120626 64120626 C T VPS54 Missense_Mutation p.A958T 0.37 tolerated(0.57) benign(0.002) TCGA-F5-6814-01 2 64819131 64819131 A C AFTPH Missense_Mutation p.T925P 0.30 deleterious(0) probably_damaging(0.921) TCGA-F5-6814-01 2 65492253 65492253 G T ACTR2 Nonsense_Mutation p.E325* 0.39 TCGA-F5-6814-01 2 66667700 66667700 G A MEIS1 Missense_Mutation p.A130T 0.10 tolerated(0.15) benign(0.01) TCGA-F5-6814-01 2 66668593 66668593 G T MEIS1 Missense_Mutation p.E160D 0.32 deleterious(0.02) benign(0.259) TCGA-F5-6814-01 2 66794605 66794605 G T MEIS1 Missense_Mutation p.R329I 0.39 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 2 66796178 66796178 C A MEIS1 Intron 0.25 TCGA-F5-6814-01 2 67630970 67630970 T G ETAA1 Missense_Mutation p.L386V 0.09 deleterious(0.01) possibly_damaging(0.906) TCGA-F5-6814-01 2 67632460 67632460 T G ETAA1 Silent p.S882S 0.10 TCGA-F5-6814-01 2 68269999 68269999 T G C1D 3'UTR 0.10 TCGA-F5-6814-01 2 68374653 68374653 G T WDR92 Missense_Mutation p.S77Y 0.37 deleterious(0) possibly_damaging(0.726) TCGA-F5-6814-01 2 68413611 68413611 C A PPP3R1 Nonsense_Mutation p.E152* 0.43 TCGA-F5-6814-01 2 68622873 68622873 C A PLEK Missense_Mutation p.F326L 0.10 tolerated(0.07) benign(0.004) TCGA-F5-6814-01 2 68691166 68691166 A C FBXO48 3'UTR 0.50 TCGA-F5-6814-01 2 68765185 68765185 C T APLF Missense_Mutation p.S329L 0.41 tolerated(0.8) benign(0.002) TCGA-F5-6814-01 2 68882420 68882420 G A PROKR1 Silent p.A298A 0.19 TCGA-F5-6814-01 2 69092718 69092718 A C BMP10 3'UTR 0.08 TCGA-F5-6814-01 2 69240773 69240773 A G ANTXR1 Missense_Mutation p.I48V 0.27 tolerated(1) benign(0.006) TCGA-F5-6814-01 2 69575380 69575380 C T GFPT1 Missense_Mutation p.R311Q 0.12 deleterious(0.03) possibly_damaging(0.545) TCGA-F5-6814-01 2 70071270 70071270 G T GMCL1 Nonsense_Mutation p.E234* 0.39 TCGA-F5-6814-01 2 70165237 70165237 G A MXD1 Missense_Mutation p.D163N 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 2 7027233 7027233 C T RSAD2 Missense_Mutation p.R226C 0.43 deleterious(0.04) probably_damaging(0.973) TCGA-F5-6814-01 2 70408426 70408426 G A C2orf42 Missense_Mutation p.S231L 0.39 tolerated(0.3) benign(0.001) TCGA-F5-6814-01 2 70508796 70508796 G T SNRPG Silent p.I67I 0.38 TCGA-F5-6814-01 2 70683501 70683501 G A TGFA Missense_Mutation p.A112V 0.30 tolerated(1) benign(0.001) TCGA-F5-6814-01 2 71187129 71187129 C A ATP6V1B1 Missense_Mutation p.S169Y 0.40 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 71298926 71298926 C T NAGK Silent p.A154A 0.23 TCGA-F5-6814-01 2 71377022 71377022 G A MPHOSPH10 Silent p.K641K 0.41 TCGA-F5-6814-01 2 71650459 71650459 C T ZNF638 Missense_Mutation p.S1272L 0.31 deleterious(0.03) benign(0.003) TCGA-F5-6814-01 2 71662095 71662095 T G ZNF638 3'UTR 0.26 TCGA-F5-6814-01 2 71801397 71801397 G A DYSF Missense_Mutation p.E1100K 0.30 tolerated(1) benign(0.009) TCGA-F5-6814-01 2 72361992 72361992 C A CYP26B1 Missense_Mutation p.E253D 0.49 tolerated(0.06) benign(0.11) TCGA-F5-6814-01 2 72741803 72741803 T G EXOC6B Missense_Mutation p.T336P 0.30 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 2 73677211 73677211 G A ALMS1 Missense_Mutation p.R1185K 0.38 benign(0.01) TCGA-F5-6814-01 2 73678379 73678379 G T ALMS1 Missense_Mutation p.E1574D 0.36 benign(0.061) TCGA-F5-6814-01 2 73680490 73680490 T G ALMS1 Missense_Mutation p.F2278C 0.45 probably_damaging(0.983) TCGA-F5-6814-01 2 73718233 73718233 A C ALMS1 Silent p.I3048I 0.27 TCGA-F5-6814-01 2 73718478 73718478 C A ALMS1 Missense_Mutation p.S3130Y 0.42 probably_damaging(0.916) TCGA-F5-6814-01 2 73800151 73800151 T G ALMS1 Missense_Mutation p.F3715C 0.17 probably_damaging(0.994) TCGA-F5-6814-01 2 73901051 73901051 C T ALMS1P RNA 0.16 TCGA-F5-6814-01 2 73957001 73957001 T G TPRKB 3'UTR 0.10 TCGA-F5-6814-01 2 73957149 73957149 T G TPRKB Missense_Mutation p.K150T 0.34 deleterious(0) possibly_damaging(0.784) TCGA-F5-6814-01 2 73957841 73957841 A C TPRKB Missense_Mutation p.F96C 0.29 tolerated(0.06) possibly_damaging(0.789) TCGA-F5-6814-01 2 74143852 74143852 A C ACTG2 Missense_Mutation p.K316T 0.21 deleterious_low_confidence(0) possibly_damaging(0.894) TCGA-F5-6814-01 2 74275465 74275465 C G TET3 Missense_Mutation p.D672E 0.24 deleterious(0) possibly_damaging(0.9) TCGA-F5-6814-01 2 74441434 74441434 G T MTHFD2 3'UTR 0.31 TCGA-F5-6814-01 2 74459683 74459683 G A SLC4A5 Missense_Mutation p.T896M 0.15 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 2 74477584 74477584 G T SLC4A5 Missense_Mutation p.F513L 0.28 deleterious(0.01) possibly_damaging(0.612) TCGA-F5-6814-01 2 74531707 74531707 G A SLC4A5 Silent p.G60G 0.41 TCGA-F5-6814-01 2 74593634 74593634 C G DCTN1 Silent p.G860G 0.50 TCGA-F5-6814-01 2 74596258 74596258 T G DCTN1 Missense_Mutation p.K556N 0.32 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 2 74692062 74692062 A C MOGS Missense_Mutation p.F105V 0.26 deleterious(0) probably_damaging(0.938) TCGA-F5-6814-01 2 74751136 74751136 G A DQX1 Missense_Mutation p.R244W 0.56 tolerated(0.15) benign(0.003) TCGA-F5-6814-01 2 74901794 74901794 C A SEMA4F Missense_Mutation p.S331Y 0.44 deleterious(0) possibly_damaging(0.836) TCGA-F5-6814-01 2 75107630 75107630 G A HK2 Missense_Mutation p.E502K 0.14 tolerated(0.27) benign(0.002) TCGA-F5-6814-01 2 75196574 75196574 G A POLE4 3'UTR 0.26 TCGA-F5-6814-01 2 75425860 75425860 C T TACR1 Silent p.T67T 0.10 TCGA-F5-6814-01 2 76975983 76975983 G T LRRTM4 Nonsense_Mutation p.Y537* 0.43 TCGA-F5-6814-01 2 77745961 77745961 A C LRRTM4 Missense_Mutation p.I345S 0.21 tolerated(0.05) benign(0.055) TCGA-F5-6814-01 2 77746636 77746636 T G LRRTM4 Missense_Mutation p.K120T 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 77746658 77746658 C A LRRTM4 Nonsense_Mutation p.E113* 0.38 TCGA-F5-6814-01 2 77746887 77746887 C A LRRTM4 Missense_Mutation p.K36N 0.31 tolerated(0.26) benign(0.064) TCGA-F5-6814-01 2 79254935 79254935 C T REG3G Silent p.G112G 0.15 TCGA-F5-6814-01 2 79313504 79313504 C A REG1B Missense_Mutation p.D104Y 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 2 79365191 79365191 A C REG1P RNA 0.41 TCGA-F5-6814-01 2 80530141 80530141 G A LRRTM1 Silent p.I268I 0.21 TCGA-F5-6814-01 2 80874923 80874923 C T CTNNA2 Nonsense_Mutation p.R882* 0.10 TCGA-F5-6814-01 2 84652548 84652548 C T SUCLG1 Silent p.T335T 0.23 TCGA-F5-6814-01 2 84864358 84864358 C T DNAH6 Missense_Mutation p.R1560W 0.26 deleterious(0) probably_damaging(0.955) TCGA-F5-6814-01 2 84899604 84899604 T C DNAH6 Missense_Mutation p.I2203T 0.31 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 2 84931384 84931384 T G DNAH6 Missense_Mutation p.V2808G 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 85041129 85041129 G C DNAH6 Missense_Mutation p.L4011F 0.31 tolerated(0.09) possibly_damaging(0.905) TCGA-F5-6814-01 2 85570414 85570414 T G RETSAT Missense_Mutation p.D595A 0.15 deleterious(0) probably_damaging(0.95) TCGA-F5-6814-01 2 85598268 85598268 C T ELMOD3 Silent p.F140F 0.56 TCGA-F5-6814-01 2 85769411 85769411 A G MAT2A Missense_Mutation p.K228R 0.11 tolerated(0.14) benign(0.005) TCGA-F5-6814-01 2 86067341 86067341 T C ST3GAL5 Missense_Mutation p.T395A 0.32 deleterious(0.03) probably_damaging(0.963) TCGA-F5-6814-01 2 86075268 86075268 C A ST3GAL5 Missense_Mutation p.K126N 0.33 tolerated(0.09) possibly_damaging(0.548) TCGA-F5-6814-01 2 86260909 86260909 A C POLR1A Missense_Mutation p.F1346V 0.19 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 2 86267598 86267598 G A POLR1A Silent p.I1219I 0.25 TCGA-F5-6814-01 2 86352196 86352196 A C PTCD3 Silent p.G265G 0.34 TCGA-F5-6814-01 2 86433412 86433412 T G MRPL35 Missense_Mutation p.L76R 0.22 deleterious(0) possibly_damaging(0.794) TCGA-F5-6814-01 2 86693548 86693548 C T KDM3A Missense_Mutation p.S354F 0.40 tolerated_low_confidence(0.13) benign(0.007) TCGA-F5-6814-01 2 86831923 86831923 T G RNF103 Missense_Mutation p.L367F 0.52 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 86847539 86847539 C T RNF103-CHMP3 Missense_Mutation p.E16K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-F5-6814-01 2 87201257 87201257 T G RGPD1 Missense_Mutation p.N437K 0.20 tolerated(0.07) benign(0.002) TCGA-F5-6814-01 2 88424075 88424075 G T FABP1 Missense_Mutation p.L91M 0.39 deleterious(0.04) possibly_damaging(0.827) TCGA-F5-6814-01 2 88879097 88879097 C T EIF2AK3 Missense_Mutation p.E609K 0.21 deleterious(0) possibly_damaging(0.641) TCGA-F5-6814-01 2 89160426 89160426 G A IGKJ4 Silent p.F3F 0.24 TCGA-F5-6814-01 2 89161535 89161535 G A IGKC 5'Flank 0.33 TCGA-F5-6814-01 2 89247062 89247062 A C IGKV1-5 Silent p.S36S 0.22 TCGA-F5-6814-01 2 89247081 89247081 G T IGKV1-5 Missense_Mutation p.P30H 0.46 deleterious(0.01) probably_damaging(0.991) TCGA-F5-6814-01 2 8928792 8928792 T G KIDINS220 Missense_Mutation p.K591T 0.39 tolerated(0.18) possibly_damaging(0.799) TCGA-F5-6814-01 2 89417029 89417029 C A IGKV1-17 Missense_Mutation p.R52I 0.21 tolerated(0.06) benign(0.003) TCGA-F5-6814-01 2 89459469 89459469 C A IGKV6-21 Missense_Mutation p.E36D 0.29 tolerated(0.38) benign(0.084) TCGA-F5-6814-01 2 8967151 8967151 G T KIDINS220 Missense_Mutation p.L25I 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 2 89953066 89953066 G T IGKV1D-33 Missense_Mutation p.R21I 0.12 deleterious(0.03) possibly_damaging(0.652) TCGA-F5-6814-01 2 90078024 90078024 G T IGKV3D-20 Nonsense_Mutation p.E21* 0.38 TCGA-F5-6814-01 2 90109053 90109053 T G IGKV6D-41 Nonsense_Mutation p.Y106* 0.16 TCGA-F5-6814-01 2 90260166 90260166 G C IGKV1D-8 Missense_Mutation p.G90A 0.15 deleterious(0.01) possibly_damaging(0.749) TCGA-F5-6814-01 2 90260245 90260245 C T IGKV1D-8 Silent p.F116F 0.29 TCGA-F5-6814-01 2 9475257 9475257 G T ASAP2 Missense_Mutation p.L266F 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 9508644 9508644 G A ASAP2 Missense_Mutation p.D518N 0.21 tolerated(0.08) probably_damaging(0.988) TCGA-F5-6814-01 2 9540169 9540169 C A ASAP2 Missense_Mutation p.P901Q 0.19 tolerated(0.06) benign(0.221) TCGA-F5-6814-01 2 95481467 95481467 T G ANKRD20A8P RNA 0.44 TCGA-F5-6814-01 2 95815691 95815691 T G ZNF514 Missense_Mutation p.K180T 0.11 tolerated(0.18) benign(0.033) TCGA-F5-6814-01 2 9582082 9582082 T G CPSF3 Missense_Mutation p.C358G 0.17 tolerated(0.13) possibly_damaging(0.567) TCGA-F5-6814-01 2 96072838 96072838 T G FAHD2A Missense_Mutation p.I132S 0.30 deleterious(0.04) benign(0.236) TCGA-F5-6814-01 2 96078862 96078862 C T FAHD2A 3'UTR 0.62 TCGA-F5-6814-01 2 96546225 96546225 G T ANKRD36C Missense_Mutation p.S167Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 2 96858172 96858172 C T STARD7 Missense_Mutation p.E260K 0.12 tolerated(0.26) benign(0.101) TCGA-F5-6814-01 2 96959180 96959180 C T SNRNP200 Missense_Mutation p.R637Q 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 2 97274699 97274699 C T KANSL3 Missense_Mutation p.D496N 0.14 deleterious(0.04) benign(0.093) TCGA-F5-6814-01 2 9727634 9727634 A C YWHAQ Missense_Mutation p.F196C 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 2 97370495 97370495 C A LMAN2L 3'Flank 0.50 TCGA-F5-6814-01 2 97498419 97498419 C G CNNM3 3'UTR 0.33 TCGA-F5-6814-01 2 98409952 98409952 G A TMEM131 Nonsense_Mutation p.R1151* 0.22 TCGA-F5-6814-01 2 98451250 98451250 C A TMEM131 Nonsense_Mutation p.E315* 0.32 TCGA-F5-6814-01 2 98458324 98458324 A G TMEM131 Missense_Mutation p.F226S 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 98709720 98709720 T C VWA3B Silent p.I55I 0.32 TCGA-F5-6814-01 2 98851207 98851207 G A VWA3B Missense_Mutation p.R802Q 0.46 tolerated(0.31) benign(0.004) TCGA-F5-6814-01 2 99012494 99012494 C A CNGA3 Missense_Mutation p.F287L 0.18 deleterious(0.04) probably_damaging(0.977) TCGA-F5-6814-01 2 99012632 99012632 C T CNGA3 Silent p.D333D 0.22 TCGA-F5-6814-01 2 99012779 99012779 C T CNGA3 Silent p.V382V 0.21 TCGA-F5-6814-01 2 99012806 99012806 T A CNGA3 Silent p.I391I 0.39 TCGA-F5-6814-01 2 99169268 99169268 T C INPP4A Missense_Mutation p.S400P 0.32 tolerated(0.29) possibly_damaging(0.848) TCGA-F5-6814-01 2 99185065 99185065 A G INPP4A Missense_Mutation p.N823D 0.13 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 2 99634750 99634750 G T TSGA10 Missense_Mutation p.S662Y 0.47 deleterious(0) probably_damaging(0.913) TCGA-F5-6814-01 2 99936193 99936193 C A TXNDC9 Missense_Mutation p.K211N 0.25 tolerated(0.07) benign(0.068) TCGA-F5-6814-01 2 99976947 99976947 G T EIF5B Nonsense_Mutation p.E61* 0.41 TCGA-F5-6814-01 2 99977909 99977909 C A EIF5B Missense_Mutation p.S182Y 0.32 benign(0.184) TCGA-F5-6814-01 3 100009514 100009514 A G TBC1D23 Missense_Mutation p.K190R 0.44 tolerated(0.53) benign(0.225) TCGA-F5-6814-01 3 100489591 100489591 G A ABI3BP Silent p.V868V 0.47 TCGA-F5-6814-01 3 100947651 100947651 C T IMPG2 Missense_Mutation p.E1235K 0.40 deleterious(0.01) benign(0.211) TCGA-F5-6814-01 3 100947719 100947719 T C IMPG2 Missense_Mutation p.E1212G 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 100961706 100961706 C A IMPG2 Nonsense_Mutation p.E950* 0.32 TCGA-F5-6814-01 3 100962766 100962766 C A IMPG2 Missense_Mutation p.Q803H 0.23 deleterious(0.05) benign(0.336) TCGA-F5-6814-01 3 100963234 100963234 C A IMPG2 Missense_Mutation p.K647N 0.32 tolerated(0.08) benign(0.018) TCGA-F5-6814-01 3 101023111 101023111 C T IMPG2 Missense_Mutation p.R127Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 101038625 101038625 G T IMPG2 Missense_Mutation p.S46Y 0.53 deleterious(0.01) possibly_damaging(0.494) TCGA-F5-6814-01 3 101086730 101086730 T G SENP7 Missense_Mutation p.N308H 0.10 deleterious(0.04) benign(0.002) TCGA-F5-6814-01 3 101374969 101374969 C A ZBTB11 Nonsense_Mutation p.E724* 0.18 TCGA-F5-6814-01 3 101378679 101378679 G T ZBTB11 Missense_Mutation p.S665Y 0.14 deleterious(0.02) probably_damaging(0.989) TCGA-F5-6814-01 3 101389938 101389938 T C ZBTB11 Intron 0.42 TCGA-F5-6814-01 3 101390217 101390217 A C ZBTB11 Intron 0.20 TCGA-F5-6814-01 3 101445552 101445552 A T CEP97 Missense_Mutation p.N53I 0.31 deleterious(0) probably_damaging(0.957) TCGA-F5-6814-01 3 101520430 101520430 C A NXPE3 Missense_Mutation p.H149N 0.57 deleterious(0.01) probably_damaging(0.993) TCGA-F5-6814-01 3 10370591 10370591 G A ATP2B2 Silent p.I1213I 0.33 TCGA-F5-6814-01 3 10417274 10417274 T C ATP2B2 Missense_Mutation p.D419G 0.11 tolerated(0.06) benign(0.336) TCGA-F5-6814-01 3 105264053 105264053 T G ALCAM Intron 0.33 TCGA-F5-6814-01 3 105377883 105377883 G A CBLB Silent p.V960V 0.13 TCGA-F5-6814-01 3 105400564 105400564 G A CBLB Intron 0.19 TCGA-F5-6814-01 3 105412394 105412394 A C CBLB Missense_Mutation p.D666E 0.08 deleterious_low_confidence(0.05) probably_damaging(0.968) TCGA-F5-6814-01 3 105438944 105438944 C T CBLB Missense_Mutation p.D452N 0.12 deleterious(0.01) possibly_damaging(0.471) TCGA-F5-6814-01 3 105439041 105439041 C T CBLB Silent p.E419E 0.31 TCGA-F5-6814-01 3 107096559 107096559 C A CCDC54 Nonsense_Mutation p.S42* 0.38 TCGA-F5-6814-01 3 107097421 107097421 G A CCDC54 Silent p.%3D 0.37 TCGA-F5-6814-01 3 108102483 108102483 C A MYH15 Missense_Mutation p.V1929F 0.37 deleterious(0.01) possibly_damaging(0.883) TCGA-F5-6814-01 3 108117498 108117498 G T MYH15 Missense_Mutation p.L1727I 0.11 deleterious(0.02) possibly_damaging(0.801) TCGA-F5-6814-01 3 108127247 108127247 C T MYH15 Silent p.E1520E 0.28 TCGA-F5-6814-01 3 108129569 108129569 G A MYH15 Silent p.H1472H 0.42 TCGA-F5-6814-01 3 108298522 108298522 G T KIAA1524 Missense_Mutation p.S188Y 0.35 deleterious(0.01) possibly_damaging(0.674) TCGA-F5-6814-01 3 108330091 108330091 T C DZIP3 Missense_Mutation p.L58S 0.15 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 3 108335391 108335391 G T DZIP3 Nonsense_Mutation p.E88* 0.40 TCGA-F5-6814-01 3 108353748 108353748 T C DZIP3 Missense_Mutation p.C283R 0.32 deleterious(0) benign(0.385) TCGA-F5-6814-01 3 108363048 108363048 C A DZIP3 Missense_Mutation p.F393L 0.17 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-F5-6814-01 3 108568059 108568059 G T TRAT1 Missense_Mutation p.E87D 0.34 tolerated(0.08) benign(0.117) TCGA-F5-6814-01 3 108672532 108672532 A C GUCA1C Missense_Mutation p.F26L 0.23 tolerated(0.12) benign(0.008) TCGA-F5-6814-01 3 108672533 108672533 A C GUCA1C Missense_Mutation p.F26C 0.48 deleterious(0.02) benign(0.042) TCGA-F5-6814-01 3 108778673 108778673 C A MORC1 Missense_Mutation p.K337N 0.42 tolerated(0.05) benign(0.033) TCGA-F5-6814-01 3 108818291 108818291 C A MORC1 Missense_Mutation p.D113Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 109031534 109031534 G T DPPA2 Missense_Mutation p.F13L 0.40 tolerated(0.19) benign(0.011) TCGA-F5-6814-01 3 109213147 109213147 G T RP11-702L6.4 RNA 0.27 TCGA-F5-6814-01 3 10975765 10975765 C A SLC6A11 Missense_Mutation p.F496L 0.14 tolerated(0.14) possibly_damaging(0.586) TCGA-F5-6814-01 3 110852566 110852566 A C PVRL3 Missense_Mutation p.K385T 0.11 tolerated(0.18) benign(0.305) TCGA-F5-6814-01 3 111325691 111325691 G A CD96 Intron 0.23 TCGA-F5-6814-01 3 111325699 111325699 T G CD96 Intron 0.37 TCGA-F5-6814-01 3 111659389 111659389 T G PHLDB2 Missense_Mutation p.I765S 0.09 deleterious(0) benign(0.014) TCGA-F5-6814-01 3 111760854 111760854 A G TMPRSS7 Missense_Mutation p.E17G 0.09 deleterious(0.03) probably_damaging(0.948) TCGA-F5-6814-01 3 111849417 111849417 C A GCSAM Intron 0.54 TCGA-F5-6814-01 3 111859906 111859906 T A SLC9C1 3'UTR 0.36 TCGA-F5-6814-01 3 111887871 111887871 A C SLC9C1 Missense_Mutation p.I1030M 0.24 tolerated(0.21) benign(0.012) TCGA-F5-6814-01 3 111898452 111898452 C A SLC9C1 Nonsense_Mutation p.E949* 0.26 TCGA-F5-6814-01 3 111923116 111923116 T G SLC9C1 Silent p.V707V 0.18 TCGA-F5-6814-01 3 112198350 112198350 A C BTLA Missense_Mutation p.F119V 0.13 tolerated(0.64) benign(0.009) TCGA-F5-6814-01 3 112324433 112324433 G A CCDC80 Missense_Mutation p.S895L 0.38 deleterious(0) probably_damaging(0.953) TCGA-F5-6814-01 3 112324549 112324549 A C CCDC80 Nonsense_Mutation p.Y856* 0.39 TCGA-F5-6814-01 3 112534782 112534782 G T CD200R1L 3'UTR 0.36 TCGA-F5-6814-01 3 112648061 112648061 G A CD200R1 Missense_Mutation p.R166C 0.48 tolerated(0.13) probably_damaging(0.931) TCGA-F5-6814-01 3 112649969 112649969 C T CD200R1 Silent p.S62S 0.37 TCGA-F5-6814-01 3 112649970 112649970 G A CD200R1 Missense_Mutation p.S62L 0.26 tolerated(0.11) probably_damaging(0.99) TCGA-F5-6814-01 3 112714105 112714105 C T GTPBP8 Nonsense_Mutation p.R187* 0.28 TCGA-F5-6814-01 3 112724600 112724600 C A C3orf17 Missense_Mutation p.R496I 0.15 deleterious(0.01) possibly_damaging(0.691) TCGA-F5-6814-01 3 113375538 113375538 C A KIAA2018 Missense_Mutation p.R1664I 0.29 probably_damaging(0.999) TCGA-F5-6814-01 3 113378866 113378866 G T KIAA2018 Missense_Mutation p.L555I 0.09 probably_damaging(0.996) TCGA-F5-6814-01 3 113528410 113528410 T C ATP6V1A 3'UTR 0.43 TCGA-F5-6814-01 3 113594373 113594373 G A GRAMD1C Missense_Mutation p.R101Q 0.30 deleterious(0.02) benign(0.319) TCGA-F5-6814-01 3 113601663 113601663 A C GRAMD1C Missense_Mutation p.N175T 0.21 deleterious(0) possibly_damaging(0.776) TCGA-F5-6814-01 3 113658832 113658832 G T GRAMD1C Missense_Mutation p.E597D 0.39 tolerated(0.18) benign(0.018) TCGA-F5-6814-01 3 113672791 113672791 G T ZDHHC23 Nonsense_Mutation p.E136* 0.09 TCGA-F5-6814-01 3 11374534 11374534 G A ATG7 Missense_Mutation p.E286K 0.23 tolerated(0.54) benign(0.005) TCGA-F5-6814-01 3 113850076 113850076 G A DRD3 Nonsense_Mutation p.R299* 0.09 TCGA-F5-6814-01 3 113858507 113858507 A C DRD3 Missense_Mutation p.F188C 0.21 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 3 114027030 114027030 G T TIGIT 3'UTR 0.31 TCGA-F5-6814-01 3 115394972 115394972 G T GAP43 Missense_Mutation p.R84M 0.16 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 3 11858707 11858707 T G TAMM41 Missense_Mutation p.N223H 0.26 tolerated(0.57) benign(0.039) TCGA-F5-6814-01 3 11858737 11858737 G A TAMM41 Nonsense_Mutation p.R213* 0.38 TCGA-F5-6814-01 3 118623534 118623534 T C IGSF11 Missense_Mutation p.N272S 0.32 deleterious(0.04) benign(0.011) TCGA-F5-6814-01 3 118866320 118866320 C A C3orf30 Missense_Mutation p.F428L 0.09 tolerated(0.71) benign(0.002) TCGA-F5-6814-01 3 118870091 118870091 C A C3orf30 Silent p.V521V 0.56 TCGA-F5-6814-01 3 118905613 118905613 C T UPK1B Missense_Mutation p.R9C 0.32 deleterious(0.02) possibly_damaging(0.487) TCGA-F5-6814-01 3 118909881 118909881 G A UPK1B Missense_Mutation p.S133N 0.47 tolerated(0.38) benign(0.005) TCGA-F5-6814-01 3 118931563 118931563 A G B4GALT4 Intron 0.38 TCGA-F5-6814-01 3 118935008 118935008 C T B4GALT4 Intron 0.37 TCGA-F5-6814-01 3 118935013 118935013 C T B4GALT4 Intron 0.33 TCGA-F5-6814-01 3 119120848 119120848 C T ARHGAP31 Missense_Mutation p.R417C 0.13 deleterious(0) possibly_damaging(0.796) TCGA-F5-6814-01 3 119133631 119133631 G A ARHGAP31 Missense_Mutation p.S952N 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 3 119456230 119456230 G T MAATS1 Missense_Mutation p.K454N 0.12 deleterious(0.02) benign(0.299) TCGA-F5-6814-01 3 119456274 119456274 G T MAATS1 Missense_Mutation p.R469I 0.33 deleterious(0) possibly_damaging(0.789) TCGA-F5-6814-01 3 119545653 119545653 T G GSK3B Silent p.S428S 0.25 TCGA-F5-6814-01 3 119562132 119562132 A G GSK3B Missense_Mutation p.S402P 0.19 tolerated_low_confidence(0.15) benign(0.001) TCGA-F5-6814-01 3 119720937 119720937 C A GSK3B Nonsense_Mutation p.E80* 0.23 TCGA-F5-6814-01 3 119886062 119886062 G T GPR156 Missense_Mutation p.F754L 0.38 tolerated(0.28) benign(0.005) TCGA-F5-6814-01 3 119886734 119886734 G C GPR156 Missense_Mutation p.N530K 0.24 tolerated(0.18) benign(0.164) TCGA-F5-6814-01 3 120123732 120123732 C T FSTL1 Silent p.T183T 0.27 TCGA-F5-6814-01 3 120128476 120128476 C T FSTL1 Missense_Mutation p.R122Q 0.31 deleterious(0) possibly_damaging(0.9) TCGA-F5-6814-01 3 120320995 120320995 C A NDUFB4 Intron 0.16 TCGA-F5-6814-01 3 120401012 120401012 A C HGD 5'UTR 0.25 TCGA-F5-6814-01 3 120957912 120957912 C A STXBP5L Missense_Mutation p.L427I 0.39 deleterious(0) possibly_damaging(0.45) TCGA-F5-6814-01 3 121097653 121097653 G A STXBP5L Missense_Mutation p.R780H 0.35 deleterious(0) probably_damaging(0.915) TCGA-F5-6814-01 3 121100154 121100154 T C STXBP5L Missense_Mutation p.S812P 0.32 tolerated(0.06) possibly_damaging(0.501) TCGA-F5-6814-01 3 121134801 121134801 A G STXBP5L Missense_Mutation p.D1095G 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 121206769 121206769 C T POLQ Missense_Mutation p.R1670K 0.29 tolerated(0.53) benign(0.005) TCGA-F5-6814-01 3 121207245 121207245 T G POLQ Missense_Mutation p.E1511D 0.30 tolerated(0.32) benign(0.004) TCGA-F5-6814-01 3 121340300 121340300 G A FBXO40 Silent p.P8P 0.18 TCGA-F5-6814-01 3 121350660 121350660 G A HCLS1 3'UTR 0.28 TCGA-F5-6814-01 3 121356047 121356047 C A HCLS1 Missense_Mutation p.A171S 0.23 tolerated(0.6) unknown(0) TCGA-F5-6814-01 3 121366252 121366252 G T HCLS1 Missense_Mutation p.L68I 0.39 tolerated(0.79) benign(0.364) TCGA-F5-6814-01 3 121400698 121400698 C A GOLGB1 Missense_Mutation p.K2903N 0.38 possibly_damaging(0.618) TCGA-F5-6814-01 3 121410631 121410631 A C GOLGB1 Missense_Mutation p.L2527R 0.14 probably_damaging(1) TCGA-F5-6814-01 3 121413007 121413007 C A GOLGB1 Missense_Mutation p.M2121I 0.28 benign(0.024) TCGA-F5-6814-01 3 121413256 121413256 C A GOLGB1 Missense_Mutation p.E2038D 0.30 probably_damaging(0.934) TCGA-F5-6814-01 3 121413958 121413958 C T GOLGB1 Silent p.E1804E 0.08 TCGA-F5-6814-01 3 121414123 121414123 A C GOLGB1 Silent p.S1749S 0.12 TCGA-F5-6814-01 3 121414429 121414429 C A GOLGB1 Missense_Mutation p.E1647D 0.30 probably_damaging(0.999) TCGA-F5-6814-01 3 121414507 121414507 T C GOLGB1 Silent p.E1621E 0.15 TCGA-F5-6814-01 3 121414710 121414710 C A GOLGB1 Missense_Mutation p.D1554Y 0.18 probably_damaging(0.993) TCGA-F5-6814-01 3 121415253 121415253 C T GOLGB1 Missense_Mutation p.E1373K 0.28 benign(0.031) TCGA-F5-6814-01 3 121416180 121416180 C A GOLGB1 Nonsense_Mutation p.E1064* 0.22 TCGA-F5-6814-01 3 121573627 121573627 C T EAF2 Missense_Mutation p.R99W 0.38 tolerated(0.06) probably_damaging(0.994) TCGA-F5-6814-01 3 121810493 121810493 C A CD86 Silent p.L20L 0.31 TCGA-F5-6814-01 3 121822478 121822478 A C CD86 Missense_Mutation p.N62H 0.45 deleterious(0.01) possibly_damaging(0.8) TCGA-F5-6814-01 3 122003760 122003760 A G CASR Missense_Mutation p.M997V 0.18 tolerated_low_confidence(0.66) benign(0) TCGA-F5-6814-01 3 122060327 122060327 C A CSTA Missense_Mutation p.F70L 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-F5-6814-01 3 122133528 122133528 T G WDR5B Missense_Mutation p.N283T 0.11 deleterious(0) possibly_damaging(0.649) TCGA-F5-6814-01 3 122274184 122274184 G A PARP9 Silent p.V313V 0.42 TCGA-F5-6814-01 3 122289329 122289329 T C DTX3L Missense_Mutation p.Y655H 0.10 deleterious(0) possibly_damaging(0.883) TCGA-F5-6814-01 3 122329372 122329372 A T PARP15 Missense_Mutation p.N113I 0.26 deleterious(0) benign(0.156) TCGA-F5-6814-01 3 122332028 122332028 C T PARP15 Silent p.F228F 0.48 TCGA-F5-6814-01 3 122419220 122419220 G A PARP14 Missense_Mutation p.E607K 0.19 tolerated(0.14) benign(0.063) TCGA-F5-6814-01 3 122422619 122422619 G T PARP14 Missense_Mutation p.D1038Y 0.12 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 3 122422825 122422825 G T PARP14 Missense_Mutation p.K1106N 0.17 deleterious(0.02) possibly_damaging(0.712) TCGA-F5-6814-01 3 122446798 122446798 G A PARP14 Missense_Mutation p.R1694Q 0.30 tolerated(0.45) benign(0.251) TCGA-F5-6814-01 3 122578975 122578975 C T DIRC2 Missense_Mutation p.S355L 0.42 tolerated(0.67) benign(0.003) TCGA-F5-6814-01 3 122631782 122631782 C A SEMA5B Missense_Mutation p.R932I 0.36 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 122645514 122645514 G A SEMA5B Silent p.F341F 0.17 TCGA-F5-6814-01 3 122990378 122990378 C A SEC22A Missense_Mutation p.L245I 0.43 deleterious(0.02) benign(0.24) TCGA-F5-6814-01 3 123022930 123022930 G A ADCY5 Missense_Mutation p.A848V 0.29 tolerated(0.17) benign(0.017) TCGA-F5-6814-01 3 123419216 123419216 C A MYLK Missense_Mutation p.E1033D 0.25 tolerated(0.11) benign(0.286) TCGA-F5-6814-01 3 123444855 123444855 C A MYLK Missense_Mutation p.Q529H 0.18 deleterious(0.01) possibly_damaging(0.604) TCGA-F5-6814-01 3 123512533 123512533 G A MYLK Silent p.F52F 0.33 TCGA-F5-6814-01 3 123649959 123649959 C A CCDC14 Nonsense_Mutation p.E597* 0.36 TCGA-F5-6814-01 3 123650166 123650166 C A CCDC14 Missense_Mutation p.R552I 0.43 deleterious(0) possibly_damaging(0.883) TCGA-F5-6814-01 3 123665850 123665850 A G CCDC14 Missense_Mutation p.F341S 0.11 tolerated(0.37) possibly_damaging(0.82) TCGA-F5-6814-01 3 123674739 123674739 C A CCDC14 Intron 0.23 TCGA-F5-6814-01 3 123983355 123983355 T C KALRN Missense_Mutation p.C90R 0.19 tolerated(0.84) benign(0.077) TCGA-F5-6814-01 3 124103708 124103708 C T KALRN Missense_Mutation p.A594V 0.46 tolerated(0.12) unknown(0) TCGA-F5-6814-01 3 124180786 124180786 T C KALRN Silent p.L1300L 0.25 TCGA-F5-6814-01 3 12458222 12458222 T C PPARG Missense_Mutation p.M280T 0.13 deleterious(0.02) benign(0.276) TCGA-F5-6814-01 3 124692655 124692655 C A HEG1 Nonsense_Mutation p.E1306* 0.28 TCGA-F5-6814-01 3 124731829 124731829 G T HEG1 Missense_Mutation p.S865Y 0.30 deleterious(0) benign(0.423) TCGA-F5-6814-01 3 124732486 124732486 G A HEG1 Missense_Mutation p.S646L 0.30 tolerated(1) benign(0) TCGA-F5-6814-01 3 124746341 124746341 A G HEG1 Silent p.S207S 0.34 TCGA-F5-6814-01 3 124826344 124826344 T G SLC12A8 Missense_Mutation p.Q562H 0.43 tolerated(0.17) benign(0.005) TCGA-F5-6814-01 3 124952442 124952442 C T ZNF148 Silent p.S376S 0.26 TCGA-F5-6814-01 3 124952588 124952588 C A ZNF148 Missense_Mutation p.D328Y 0.37 deleterious(0.01) benign(0.355) TCGA-F5-6814-01 3 125282654 125282654 G T OSBPL11 Missense_Mutation p.S301Y 0.39 deleterious(0.04) benign(0.225) TCGA-F5-6814-01 3 125855661 125855661 G A ALDH1L1 Silent p.F440F 0.13 TCGA-F5-6814-01 3 126268756 126268756 G A C3orf22 Silent p.C127C 0.07 TCGA-F5-6814-01 3 126291080 126291080 C A TXNRD3NB Nonsense_Mutation p.E103* 0.39 TCGA-F5-6814-01 3 12632395 12632395 G A RAF1 Silent p.C424C 0.37 TCGA-F5-6814-01 3 126752796 126752796 C T PLXNA1 Missense_Mutation p.A1876V 0.37 deleterious(0.01) benign(0.23) TCGA-F5-6814-01 3 127334792 127334792 A C MCM2 Missense_Mutation p.N506H 0.29 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 3 127646735 127646735 A G KBTBD12 Missense_Mutation p.Y400C 0.20 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 3 127682055 127682055 G T KBTBD12 Missense_Mutation p.D506Y 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 127702990 127702990 A C KBTBD12 Missense_Mutation p.N581H 0.11 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 3 127823744 127823744 C T RUVBL1 Missense_Mutation p.E129K 0.12 tolerated(0.1) possibly_damaging(0.901) TCGA-F5-6814-01 3 128205070 128205070 G A GATA2 Missense_Mutation p.T124M 0.45 deleterious(0.01) benign(0.23) TCGA-F5-6814-01 3 128369488 128369488 C A RPN1 Missense_Mutation p.E52D 0.24 tolerated(0.25) benign(0.008) TCGA-F5-6814-01 3 12858839 12858839 C A CAND2 Nonsense_Mutation p.S803* 0.35 TCGA-F5-6814-01 3 12859067 12859067 C T CAND2 Missense_Mutation p.A879V 0.28 deleterious(0.01) benign(0.007) TCGA-F5-6814-01 3 12859293 12859293 G T CAND2 Silent p.G954G 0.29 TCGA-F5-6814-01 3 128615318 128615318 T G ACAD9 Missense_Mutation p.Y165D 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 128890005 128890005 G A CNBP Silent p.C113C 0.36 TCGA-F5-6814-01 3 129127525 129127525 G T EFCAB12 Silent p.S404S 0.21 TCGA-F5-6814-01 3 129137134 129137134 C A EFCAB12 Missense_Mutation p.R215I 0.18 deleterious(0) benign(0.325) TCGA-F5-6814-01 3 129155564 129155564 C T MBD4 Missense_Mutation p.S308N 0.34 tolerated(0.5) benign(0.001) TCGA-F5-6814-01 3 129168722 129168722 A C IFT122 Missense_Mutation p.D17A 0.09 tolerated(0.07) benign(0.331) TCGA-F5-6814-01 3 129195222 129195222 A T IFT122 Missense_Mutation p.Y345F 0.16 tolerated(0.1) probably_damaging(0.919) TCGA-F5-6814-01 3 129251220 129251220 C A RHO Silent p.I219I 0.30 TCGA-F5-6814-01 3 129277361 129277361 G A PLXND1 Silent p.I1785I 0.12 TCGA-F5-6814-01 3 129291487 129291487 G T PLXND1 Silent p.V1014V 0.25 TCGA-F5-6814-01 3 129308319 129308319 A G PLXND1 Missense_Mutation p.S455P 0.38 deleterious(0) possibly_damaging(0.533) TCGA-F5-6814-01 3 129324784 129324784 C A PLXND1 Missense_Mutation p.E233D 0.21 tolerated(0.07) possibly_damaging(0.889) TCGA-F5-6814-01 3 130098453 130098453 C A COL6A5 Missense_Mutation p.S287Y 0.27 tolerated(0.08) possibly_damaging(0.883) TCGA-F5-6814-01 3 130103648 130103648 C T COL6A5 Silent p.G434G 0.27 TCGA-F5-6814-01 3 130103818 130103818 A C COL6A5 Missense_Mutation p.E491A 0.28 tolerated(0.11) benign(0.008) TCGA-F5-6814-01 3 130107616 130107616 T G COL6A5 Nonsense_Mutation p.Y685* 0.12 TCGA-F5-6814-01 3 130114006 130114006 A C COL6A5 Missense_Mutation p.K1089T 0.25 tolerated(0.06) benign(0.058) TCGA-F5-6814-01 3 130158438 130158438 C T COL6A5 Missense_Mutation p.R1936W 0.26 tolerated(0.13) benign(0.005) TCGA-F5-6814-01 3 130188146 130188146 C T COL6A5 Missense_Mutation p.A2433V 0.25 deleterious(0) benign(0.218) TCGA-F5-6814-01 3 130282498 130282498 C A COL6A6 Silent p.I217I 0.29 TCGA-F5-6814-01 3 130312058 130312058 C T COL6A6 Missense_Mutation p.P1478S 0.33 tolerated(0.06) benign(0.048) TCGA-F5-6814-01 3 130368165 130368165 T G COL6A6 Missense_Mutation p.I1831S 0.23 deleterious(0) possibly_damaging(0.607) TCGA-F5-6814-01 3 130377541 130377541 C A COL6A6 Missense_Mutation p.Q1919K 0.35 deleterious(0.03) possibly_damaging(0.604) TCGA-F5-6814-01 3 130394212 130394212 A G COL6A6 Missense_Mutation p.I2255V 0.25 tolerated_low_confidence(0.53) benign(0.009) TCGA-F5-6814-01 3 130743962 130743962 G T ASTE1 Missense_Mutation p.F63L 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 130962325 130962325 G A NEK11 Missense_Mutation p.G536S 0.28 tolerated(0.17) benign(0.007) TCGA-F5-6814-01 3 131217025 131217025 G A MRPL3 Missense_Mutation p.R156C 0.42 tolerated(0.13) benign(0.007) TCGA-F5-6814-01 3 131217099 131217099 T G MRPL3 Missense_Mutation p.K131T 0.32 deleterious(0) possibly_damaging(0.862) TCGA-F5-6814-01 3 131442427 131442427 A G CPNE4 Missense_Mutation p.Y75H 0.12 deleterious(0) possibly_damaging(0.452) TCGA-F5-6814-01 3 132185145 132185145 G A DNAJC13 Silent p.P657P 0.33 TCGA-F5-6814-01 3 132192037 132192037 A C DNAJC13 Missense_Mutation p.K753Q 0.33 deleterious(0.01) benign(0.318) TCGA-F5-6814-01 3 132199233 132199233 G T DNAJC13 Missense_Mutation p.M931I 0.37 tolerated(0.82) benign(0.003) TCGA-F5-6814-01 3 132245088 132245088 G A DNAJC13 Missense_Mutation p.R2115Q 0.20 tolerated(0.25) benign(0.111) TCGA-F5-6814-01 3 132319353 132319353 G T ACKR4 Nonsense_Mutation p.E38* 0.15 TCGA-F5-6814-01 3 132418768 132418768 T G NPHP3 Missense_Mutation p.Q627H 0.21 tolerated(0.08) benign(0.016) TCGA-F5-6814-01 3 133305566 133305566 A C CDV3 Missense_Mutation p.K209T 0.23 deleterious(0) possibly_damaging(0.824) TCGA-F5-6814-01 3 133347460 133347460 G A TOPBP1 Nonsense_Mutation p.R880* 0.38 TCGA-F5-6814-01 3 133494371 133494371 G A TF Silent p.A594A 0.50 TCGA-F5-6814-01 3 13359282 13359282 C A NUP210 Splice_Site p.X1855_splice 0.23 TCGA-F5-6814-01 3 133648220 133648220 T A C3orf36 5'UTR 0.24 TCGA-F5-6814-01 3 133673824 133673824 G A SLCO2A1 Missense_Mutation p.S204L 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 134277035 134277035 A C CEP63 Missense_Mutation p.N507H 0.23 deleterious(0.03) probably_damaging(0.914) TCGA-F5-6814-01 3 134278096 134278096 C A CEP63 Missense_Mutation p.S593Y 0.40 deleterious(0.01) possibly_damaging(0.735) TCGA-F5-6814-01 3 134323129 134323129 G A KY Silent p.S426S 0.38 TCGA-F5-6814-01 3 134323159 134323159 G T KY Silent p.I416I 0.34 TCGA-F5-6814-01 3 134670461 134670461 G T EPHB1 Missense_Mutation p.K124N 0.44 tolerated(0.38) benign(0.405) TCGA-F5-6814-01 3 134670835 134670835 C A EPHB1 Missense_Mutation p.P249H 0.42 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 3 134880984 134880984 A G EPHB1 Missense_Mutation p.K516R 0.12 tolerated(0.87) benign(0.004) TCGA-F5-6814-01 3 134911626 134911626 A C EPHB1 Silent p.T697T 0.12 TCGA-F5-6814-01 3 135720909 135720909 G T PPP2R3A Missense_Mutation p.R190I 0.18 tolerated_low_confidence(0.22) probably_damaging(0.991) TCGA-F5-6814-01 3 135721928 135721928 C G PPP2R3A Missense_Mutation p.P530A 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F5-6814-01 3 135722288 135722288 G T PPP2R3A Missense_Mutation p.D650Y 0.28 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 3 135974759 135974759 G A PCCB Missense_Mutation p.S82N 0.41 deleterious_low_confidence(0.04) benign(0.008) TCGA-F5-6814-01 3 136057277 136057277 G A STAG1 Missense_Mutation p.R1230W 0.41 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-F5-6814-01 3 13611848 13611848 C T FBLN2 5'UTR 0.15 TCGA-F5-6814-01 3 136573713 136573713 T G SLC35G2 Missense_Mutation p.I137M 0.09 deleterious(0.01) possibly_damaging(0.854) TCGA-F5-6814-01 3 137749911 137749911 G T CLDN18 Missense_Mutation p.K238N 0.12 tolerated(0.06) possibly_damaging(0.71) TCGA-F5-6814-01 3 137796439 137796439 G A DZIP1L Silent p.L442L 0.13 TCGA-F5-6814-01 3 137805809 137805809 C A DZIP1L Missense_Mutation p.K352N 0.34 tolerated(0.07) possibly_damaging(0.791) TCGA-F5-6814-01 3 137843188 137843188 T C A4GNT Missense_Mutation p.K314R 0.10 tolerated(0.34) benign(0.005) TCGA-F5-6814-01 3 137983010 137983010 C T ARMC8 Nonsense_Mutation p.R405* 0.23 TCGA-F5-6814-01 3 138022484 138022484 G A NME9 Missense_Mutation p.L204F 0.25 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 3 138195064 138195064 G T ESYT3 Splice_Site p.X823_splice 0.41 TCGA-F5-6814-01 3 138248054 138248054 C A CEP70 Missense_Mutation p.D286Y 0.40 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 3 138383916 138383916 T G PIK3CB Missense_Mutation p.K878N 0.09 deleterious(0.03) possibly_damaging(0.652) TCGA-F5-6814-01 3 138453486 138453486 C T PIK3CB Missense_Mutation p.R321Q 0.36 tolerated(0.6) benign(0.003) TCGA-F5-6814-01 3 138453531 138453531 C T PIK3CB Missense_Mutation p.R306Q 0.35 tolerated(0.18) benign(0.011) TCGA-F5-6814-01 3 138461453 138461453 C A PIK3CB Missense_Mutation p.D190Y 0.12 deleterious(0.03) possibly_damaging(0.485) TCGA-F5-6814-01 3 139094368 139094368 T C COPB2 Missense_Mutation p.D198G 0.11 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 3 13916573 13916573 C T WNT7A Missense_Mutation p.D57N 0.24 deleterious(0.01) possibly_damaging(0.507) TCGA-F5-6814-01 3 1394015 1394015 C A CNTN6 Missense_Mutation p.L458I 0.41 tolerated(1) benign(0.019) TCGA-F5-6814-01 3 140251227 140251227 A G CLSTN2 Missense_Mutation p.Y469C 0.34 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 3 140401700 140401700 C T TRIM42 Silent p.I246I 0.17 TCGA-F5-6814-01 3 141299227 141299227 A C RASA2 Missense_Mutation p.R536S 0.23 deleterious(0) possibly_damaging(0.828) TCGA-F5-6814-01 3 141328868 141328868 T C RASA2 Missense_Mutation p.Y827H 0.23 tolerated(0.12) benign(0.012) TCGA-F5-6814-01 3 141535697 141535697 C A GRK7 Missense_Mutation p.F489L 0.11 deleterious(0) possibly_damaging(0.692) TCGA-F5-6814-01 3 1415404 1415404 A G CNTN6 Missense_Mutation p.T635A 0.28 tolerated(1) benign(0.007) TCGA-F5-6814-01 3 141626095 141626095 G A ATP1B3 Missense_Mutation p.D109N 0.44 tolerated(0.55) benign(0.056) TCGA-F5-6814-01 3 141884584 141884584 C A GK5 Missense_Mutation p.K490N 0.40 tolerated(0.14) benign(0.031) TCGA-F5-6814-01 3 14190117 14190117 C A XPC Missense_Mutation p.D789Y 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 142048297 142048297 G T XRN1 Missense_Mutation p.F1460L 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 3 142141516 142141516 T G XRN1 Missense_Mutation p.D292A 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 142180796 142180796 A C ATR Missense_Mutation p.L2393R 0.10 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 3 142269045 142269045 C A ATR Nonsense_Mutation p.E969* 0.44 TCGA-F5-6814-01 3 142281600 142281600 C T ATR Missense_Mutation p.R215H 0.28 tolerated_low_confidence(0.19) benign(0) TCGA-F5-6814-01 3 142443530 142443530 G A TRPC1 Silent p.E43E 0.31 TCGA-F5-6814-01 3 142499822 142499822 G T TRPC1 Missense_Mutation p.R304I 0.36 deleterious(0.03) possibly_damaging(0.854) TCGA-F5-6814-01 3 142537097 142537097 A C PCOLCE2 3'UTR 0.38 TCGA-F5-6814-01 3 142537209 142537209 G A PCOLCE2 Missense_Mutation p.L406F 0.32 tolerated(0.21) benign(0.014) TCGA-F5-6814-01 3 142548686 142548686 G A PCOLCE2 Missense_Mutation p.P238L 0.42 deleterious(0) possibly_damaging(0.904) TCGA-F5-6814-01 3 142733211 142733211 G A U2SURP Missense_Mutation p.R94Q 0.29 deleterious(0.01) probably_damaging(0.922) TCGA-F5-6814-01 3 142735803 142735803 G T U2SURP Nonsense_Mutation p.E186* 0.23 TCGA-F5-6814-01 3 142735811 142735811 A C U2SURP Missense_Mutation p.K188N 0.16 deleterious(0.03) possibly_damaging(0.536) TCGA-F5-6814-01 3 142741464 142741464 G T U2SURP Missense_Mutation p.M326I 0.39 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 3 142752188 142752188 A C U2SURP Missense_Mutation p.K617Q 0.08 deleterious(0) possibly_damaging(0.459) TCGA-F5-6814-01 3 142762108 142762108 G A U2SURP Missense_Mutation p.R845H 0.08 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 142841452 142841452 G T CHST2 3'UTR 0.09 TCGA-F5-6814-01 3 143212550 143212550 A G SLC9A9 Silent p.N420N 0.08 TCGA-F5-6814-01 3 143214280 143214280 A C SLC9A9 Missense_Mutation p.F367C 0.27 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 3 14548406 14548406 G A GRIP2 RNA 0.45 TCGA-F5-6814-01 3 145788610 145788610 C T PLOD2 Missense_Mutation p.R724Q 0.48 deleterious(0.04) possibly_damaging(0.837) TCGA-F5-6814-01 3 145796919 145796919 C T PLOD2 Missense_Mutation p.R495Q 0.30 tolerated(0.34) benign(0.258) TCGA-F5-6814-01 3 146167088 146167088 C A PLSCR2 Nonsense_Mutation p.E257* 0.37 TCGA-F5-6814-01 3 146246449 146246449 C T PLSCR1 Silent p.A88A 0.15 TCGA-F5-6814-01 3 147114017 147114017 T C ZIC4 Missense_Mutation p.T154A 0.12 tolerated(0.33) probably_damaging(0.931) TCGA-F5-6814-01 3 147128475 147128475 G A ZIC1 Silent p.P192P 0.52 TCGA-F5-6814-01 3 147131420 147131420 C T ZIC1 3'UTR 0.53 TCGA-F5-6814-01 3 14814378 14814378 A C C3orf20 Missense_Mutation p.K904T 0.18 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-F5-6814-01 3 148459054 148459054 T G AGTR1 Missense_Mutation p.L78V 0.23 tolerated(0.28) benign(0.066) TCGA-F5-6814-01 3 148459742 148459742 A C AGTR1 Missense_Mutation p.K307T 0.32 tolerated(0.11) benign(0.064) TCGA-F5-6814-01 3 148459754 148459754 G T AGTR1 Missense_Mutation p.R311I 0.33 deleterious(0.01) benign(0.043) TCGA-F5-6814-01 3 148459910 148459910 G A AGTR1 3'UTR 0.27 TCGA-F5-6814-01 3 148460153 148460153 G A AGTR1 3'UTR 0.36 TCGA-F5-6814-01 3 14861736 14861736 G T FGD5 Missense_Mutation p.E386D 0.18 tolerated_low_confidence(0.15) benign(0.002) TCGA-F5-6814-01 3 148714108 148714108 T C GYG1 Missense_Mutation p.F55L 0.10 deleterious(0) probably_damaging(0.948) TCGA-F5-6814-01 3 148741967 148741967 C A GYG1 Missense_Mutation p.L246I 0.32 tolerated(0.06) probably_damaging(0.997) TCGA-F5-6814-01 3 148756968 148756968 C A HLTF Missense_Mutation p.K888N 0.25 tolerated(0.08) probably_damaging(1) TCGA-F5-6814-01 3 148802531 148802531 C A HLTF Missense_Mutation p.D56Y 0.25 deleterious(0) probably_damaging(0.962) TCGA-F5-6814-01 3 148858935 148858935 G T HPS3 Nonsense_Mutation p.E282* 0.39 TCGA-F5-6814-01 3 148891406 148891406 T G CP 3'UTR 0.26 TCGA-F5-6814-01 3 148927133 148927133 C A CP Nonsense_Mutation p.E216* 0.38 TCGA-F5-6814-01 3 149039018 149039018 C A TM4SF18 3'UTR 0.38 TCGA-F5-6814-01 3 149051103 149051103 T G TM4SF18 Missense_Mutation p.I23L 0.30 tolerated(0.72) benign(0.105) TCGA-F5-6814-01 3 14905733 14905733 A G FGD5 Missense_Mutation p.D875G 0.10 tolerated(0.06) possibly_damaging(0.899) TCGA-F5-6814-01 3 149260151 149260151 G A WWTR1 Nonsense_Mutation p.R248* 0.54 TCGA-F5-6814-01 3 149479290 149479290 G T ANKUB1 Missense_Mutation p.S539Y 0.09 tolerated_low_confidence(0.65) benign(0) TCGA-F5-6814-01 3 149589819 149589819 T G RNF13 Missense_Mutation p.F67V 0.15 tolerated(0.37) benign(0.021) TCGA-F5-6814-01 3 149678834 149678834 C T RNF13 Silent p.V363V 0.11 TCGA-F5-6814-01 3 149684204 149684204 T G PFN2 3'UTR 0.16 TCGA-F5-6814-01 3 149686331 149686331 C A PFN2 Nonsense_Mutation p.E47* 0.37 TCGA-F5-6814-01 3 15055141 15055141 G A NR2C2 Missense_Mutation p.A59T 0.30 tolerated_low_confidence(0.12) benign(0.356) TCGA-F5-6814-01 3 150659467 150659467 G A CLRN1 Missense_Mutation p.T112I 0.40 deleterious(0.01) benign(0.428) TCGA-F5-6814-01 3 150916337 150916337 G T GPR171 Nonsense_Mutation p.C279* 0.31 TCGA-F5-6814-01 3 150931418 150931418 C A P2RY14 Missense_Mutation p.K229N 0.32 deleterious(0) benign(0.428) TCGA-F5-6814-01 3 150931441 150931441 G A P2RY14 Missense_Mutation p.R222W 0.40 deleterious(0.01) probably_damaging(0.94) TCGA-F5-6814-01 3 150931798 150931798 C T P2RY14 Missense_Mutation p.V103I 0.31 tolerated(0.27) benign(0.011) TCGA-F5-6814-01 3 15094893 15094893 T G MRPS25 Missense_Mutation p.K108T 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 151012765 151012765 A G GPR87 Missense_Mutation p.M90T 0.16 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 3 151045671 151045671 A C P2RY13 3'UTR 0.12 TCGA-F5-6814-01 3 151045937 151045937 G T P2RY13 Missense_Mutation p.L303I 0.26 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 3 151067955 151067955 C A MED12L Missense_Mutation p.L752M 0.47 tolerated(0.09) benign(0.278) TCGA-F5-6814-01 3 151105657 151105657 G A MED12L Silent p.K1681K 0.45 TCGA-F5-6814-01 3 15115666 15115666 C A ZFYVE20 Nonsense_Mutation p.E660* 0.18 TCGA-F5-6814-01 3 151163531 151163531 C A IGSF10 Missense_Mutation p.R1413I 0.42 tolerated(0.19) benign(0.114) TCGA-F5-6814-01 3 151163705 151163705 C A IGSF10 Missense_Mutation p.R1355M 0.36 deleterious(0.02) benign(0.02) TCGA-F5-6814-01 3 151164194 151164194 A C IGSF10 Missense_Mutation p.I1192S 0.07 tolerated(0.11) benign(0.001) TCGA-F5-6814-01 3 151165276 151165276 A C IGSF10 Missense_Mutation p.S831R 0.20 tolerated(0.07) benign(0.004) TCGA-F5-6814-01 3 151165368 151165368 C T IGSF10 Missense_Mutation p.A801T 0.13 tolerated(0.24) benign(0) TCGA-F5-6814-01 3 151166402 151166402 G A IGSF10 Missense_Mutation p.A456V 0.42 tolerated(0.23) benign(0.011) TCGA-F5-6814-01 3 151166845 151166845 A C IGSF10 Silent p.G308G 0.19 TCGA-F5-6814-01 3 15119624 15119624 C T ZFYVE20 Missense_Mutation p.R319Q 0.38 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 3 151475099 151475099 C A AADACL2 Nonsense_Mutation p.S308* 0.32 TCGA-F5-6814-01 3 151599054 151599054 C A SUCNR1 Missense_Mutation p.F241L 0.44 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 3 152018136 152018136 G A MBNL1 Missense_Mutation p.A52T 0.45 deleterious(0) possibly_damaging(0.448) TCGA-F5-6814-01 3 152163274 152163274 A G MBNL1 Silent p.Q251Q 0.13 TCGA-F5-6814-01 3 152555127 152555127 C A P2RY1 3'UTR 0.43 TCGA-F5-6814-01 3 152555317 152555317 T C P2RY1 3'UTR 0.35 TCGA-F5-6814-01 3 152555830 152555830 A C P2RY1 3'UTR 0.39 TCGA-F5-6814-01 3 15282310 15282310 T G CAPN7 Missense_Mutation p.I534M 0.09 deleterious(0.02) benign(0.411) TCGA-F5-6814-01 3 153870664 153870664 A C ARHGEF26 Missense_Mutation p.K477T 0.30 tolerated(0.06) benign(0.282) TCGA-F5-6814-01 3 154006755 154006755 T C DHX36 Splice_Site p.X645_splice 0.16 TCGA-F5-6814-01 3 154033003 154033003 C A DHX36 Missense_Mutation p.K145N 0.19 tolerated(0.52) benign(0.007) TCGA-F5-6814-01 3 154055761 154055761 A C GPR149 Missense_Mutation p.S641R 0.34 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 3 154889941 154889941 A C MME Missense_Mutation p.E672D 0.15 tolerated(0.47) benign(0.018) TCGA-F5-6814-01 3 155199200 155199200 G A PLCH1 Missense_Mutation p.R1547W 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 155200026 155200026 C T PLCH1 Silent p.T1271T 0.27 TCGA-F5-6814-01 3 155203396 155203396 C A PLCH1 Missense_Mutation p.R916I 0.12 deleterious(0) possibly_damaging(0.792) TCGA-F5-6814-01 3 155203461 155203461 C A PLCH1 Missense_Mutation p.K894N 0.29 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 3 155481488 155481488 C A C3orf33 Nonsense_Mutation p.E192* 0.20 TCGA-F5-6814-01 3 155493601 155493601 C A C3orf33 Nonsense_Mutation p.E28* 0.22 TCGA-F5-6814-01 3 155615812 155615812 A C GMPS Silent p.G102G 0.26 TCGA-F5-6814-01 3 155652736 155652736 G T GMPS Nonsense_Mutation p.E570* 0.33 TCGA-F5-6814-01 3 156009739 156009739 C T KCNAB1 Intron 0.21 TCGA-F5-6814-01 3 156411816 156411816 G T TIPARP Nonsense_Mutation p.E309* 0.29 TCGA-F5-6814-01 3 156422508 156422508 G A TIPARP Missense_Mutation p.R521H 0.10 tolerated(0.19) benign(0.01) TCGA-F5-6814-01 3 156422642 156422642 G A TIPARP Missense_Mutation p.A566T 0.36 deleterious(0.04) probably_damaging(0.98) TCGA-F5-6814-01 3 156866196 156866196 G T CCNL1 Missense_Mutation p.S472Y 0.40 deleterious(0.01) unknown(0) TCGA-F5-6814-01 3 157082274 157082274 G T VEPH1 Missense_Mutation p.F385L 0.28 tolerated(0.65) benign(0) TCGA-F5-6814-01 3 15711594 15711594 G T ANKRD28 3'UTR 0.33 TCGA-F5-6814-01 3 157296184 157296184 G T C3orf55 Intron 0.40 TCGA-F5-6814-01 3 157820642 157820642 G A SHOX2 Missense_Mutation p.A151V 0.42 tolerated(0.53) benign(0.04) TCGA-F5-6814-01 3 158371108 158371108 C T GFM1 Nonsense_Mutation p.R284* 0.10 TCGA-F5-6814-01 3 158524853 158524853 C A MFSD1 Nonsense_Mutation p.C167* 0.25 TCGA-F5-6814-01 3 158546864 158546864 A G MFSD1 3'UTR 0.34 TCGA-F5-6814-01 3 159605586 159605586 G T IQCJ-SCHIP1 Missense_Mutation p.K438N 0.44 deleterious(0.04) probably_damaging(0.948) TCGA-F5-6814-01 3 160155940 160155940 C T TRIM59 Silent p.S344S 0.08 TCGA-F5-6814-01 3 160803734 160803734 A G B3GALNT1 Missense_Mutation p.V270A 0.36 deleterious(0.03) benign(0.022) TCGA-F5-6814-01 3 160952922 160952922 A C NMD3 Missense_Mutation p.K167Q 0.23 deleterious(0) probably_damaging(0.943) TCGA-F5-6814-01 3 160955951 160955951 G A NMD3 Missense_Mutation p.E210K 0.13 deleterious(0) possibly_damaging(0.456) TCGA-F5-6814-01 3 161063888 161063888 G T SPTSSB Missense_Mutation p.S75Y 0.50 deleterious(0.05) possibly_damaging(0.687) TCGA-F5-6814-01 3 161221371 161221371 C A OTOL1 Missense_Mutation p.P359T 0.15 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 161221569 161221569 G T OTOL1 Missense_Mutation p.D425Y 0.29 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 16345089 16345089 A C OXNAD1 3'UTR 0.20 TCGA-F5-6814-01 3 16450988 16450988 G T RFTN1 Missense_Mutation p.S112Y 0.54 deleterious(0.01) probably_damaging(0.982) TCGA-F5-6814-01 3 164710143 164710143 G T SI Missense_Mutation p.F1628L 0.28 tolerated(0.06) benign(0.413) TCGA-F5-6814-01 3 164906791 164906791 G T SLITRK3 Missense_Mutation p.L610I 0.37 tolerated(0.44) benign(0.019) TCGA-F5-6814-01 3 164908324 164908324 G T SLITRK3 Missense_Mutation p.H99N 0.16 tolerated(1) probably_damaging(0.991) TCGA-F5-6814-01 3 16535337 16535337 T G RFTN1 Missense_Mutation p.K14Q 0.33 deleterious(0.01) probably_damaging(0.955) TCGA-F5-6814-01 3 165547407 165547407 A T BCHE Missense_Mutation p.F472Y 0.18 deleterious(0.04) possibly_damaging(0.783) TCGA-F5-6814-01 3 165547921 165547921 G T BCHE Missense_Mutation p.L301I 0.36 tolerated(0.77) benign(0.255) TCGA-F5-6814-01 3 16630065 16630065 G A DAZL 3'UTR 0.40 TCGA-F5-6814-01 3 16630079 16630079 A G DAZL 3'UTR 0.12 TCGA-F5-6814-01 3 16633591 16633591 C A DAZL Missense_Mutation p.R287I 0.44 deleterious(0.04) possibly_damaging(0.67) TCGA-F5-6814-01 3 16640063 16640063 C A DAZL Nonsense_Mutation p.E36* 0.60 TCGA-F5-6814-01 3 16646843 16646843 G T DAZL 5'Flank 0.67 TCGA-F5-6814-01 3 167078473 167078473 T C ZBBX Silent p.E104E 0.33 TCGA-F5-6814-01 3 167183073 167183073 C T SERPINI2 Missense_Mutation p.E263K 0.33 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 3 167189549 167189549 T G SERPINI2 Missense_Mutation p.K25T 0.09 tolerated(0.7) benign(0.186) TCGA-F5-6814-01 3 167196657 167196657 C A WDR49 3'UTR 0.17 TCGA-F5-6814-01 3 167196668 167196668 A C WDR49 Nonstop_Mutation p.*698Eext*? 0.20 TCGA-F5-6814-01 3 167413466 167413466 C T PDCD10 Missense_Mutation p.E105K 0.24 tolerated(1) benign(0.006) TCGA-F5-6814-01 3 167414834 167414834 C T PDCD10 Silent p.T77T 0.38 TCGA-F5-6814-01 3 167745619 167745619 T G GOLIM4 Missense_Mutation p.E507A 0.09 deleterious(0) probably_damaging(0.952) TCGA-F5-6814-01 3 168810804 168810804 G A MECOM Nonsense_Mutation p.R913* 0.13 TCGA-F5-6814-01 3 169496569 169496569 G T MYNN Nonsense_Mutation p.E94* 0.35 TCGA-F5-6814-01 3 169497266 169497266 G A MYNN Missense_Mutation p.G326E 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 169511421 169511421 T G LRRC34 3'UTR 0.29 TCGA-F5-6814-01 3 169555316 169555316 T C LRRIQ4 Missense_Mutation p.F527S 0.09 deleterious(0) possibly_damaging(0.793) TCGA-F5-6814-01 3 169557856 169557856 G T LRRC31 Missense_Mutation p.L525I 0.26 tolerated(0.12) benign(0.105) TCGA-F5-6814-01 3 169574166 169574166 A G LRRC31 Silent p.L261L 0.10 TCGA-F5-6814-01 3 169664266 169664266 T G RP11-379K17.4 RNA 0.12 TCGA-F5-6814-01 3 169700517 169700517 C A SEC62 Missense_Mutation p.H92N 0.43 deleterious(0.02) possibly_damaging(0.751) TCGA-F5-6814-01 3 169866855 169866855 T G PHC3 Intron 0.11 TCGA-F5-6814-01 3 169999738 169999738 T G PRKCI Missense_Mutation p.L350R 0.15 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 170009649 170009649 T C PRKCI Missense_Mutation p.L404S 0.21 deleterious(0.03) probably_damaging(1) TCGA-F5-6814-01 3 170020860 170020860 T G PRKCI Missense_Mutation p.F579C 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 170078125 170078125 A C SKIL Missense_Mutation p.E2D 0.08 deleterious_low_confidence(0.02) benign(0.44) TCGA-F5-6814-01 3 170108019 170108019 A C SKIL Missense_Mutation p.I480L 0.37 tolerated(0.76) benign(0.001) TCGA-F5-6814-01 3 170150320 170150320 G A CLDN11 Missense_Mutation p.A134T 0.54 tolerated(0.18) benign(0.008) TCGA-F5-6814-01 3 170624791 170624791 C A EIF5A2 Missense_Mutation p.R86I 0.31 deleterious(0) probably_damaging(0.941) TCGA-F5-6814-01 3 170625586 170625586 C T EIF5A2 Missense_Mutation p.E4K 0.24 deleterious(0.01) benign(0.102) TCGA-F5-6814-01 3 170781747 170781747 A C TNIK Missense_Mutation p.F1336V 0.10 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 3 170884900 170884900 C T TNIK Silent p.K311K 0.21 TCGA-F5-6814-01 3 171451273 171451273 C A PLD1 Missense_Mutation p.K189N 0.10 tolerated(0.77) benign(0.026) TCGA-F5-6814-01 3 171451300 171451300 C A PLD1 Splice_Site p.X181_splice 0.29 TCGA-F5-6814-01 3 172224179 172224179 C A TNFSF10 3'UTR 0.14 TCGA-F5-6814-01 3 172351613 172351613 A G NCEH1 Silent p.P333P 0.10 TCGA-F5-6814-01 3 172351694 172351694 C T NCEH1 Missense_Mutation p.M306I 0.44 tolerated(0.07) benign(0.099) TCGA-F5-6814-01 3 172477989 172477989 G T ECT2 Missense_Mutation p.R207L 0.35 deleterious(0) probably_damaging(0.914) TCGA-F5-6814-01 3 172533484 172533484 A C ECT2 Missense_Mutation p.K831Q 0.17 deleterious(0.03) possibly_damaging(0.616) TCGA-F5-6814-01 3 172533489 172533489 G T ECT2 Missense_Mutation p.K832N 0.31 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 3 173322669 173322669 G A NLGN1 Missense_Mutation p.R94H 0.09 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 3 173322705 173322705 A C NLGN1 Missense_Mutation p.D106A 0.19 deleterious(0.02) benign(0.01) TCGA-F5-6814-01 3 173993168 173993168 C A NLGN1 Missense_Mutation p.A237D 0.35 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 3 176743235 176743235 T G TBL1XR1 3'UTR 0.27 TCGA-F5-6814-01 3 176752059 176752059 C A TBL1XR1 Nonsense_Mutation p.E393* 0.33 TCGA-F5-6814-01 3 178742983 178742983 C A ZMAT3 Missense_Mutation p.R231I 0.48 deleterious(0.01) possibly_damaging(0.736) TCGA-F5-6814-01 3 178921529 178921529 A C PIK3CA Missense_Mutation p.K337N 0.32 deleterious(0.02) benign(0.136) TCGA-F5-6814-01 3 178928220 178928220 A C PIK3CA Missense_Mutation p.E469A 0.09 tolerated(0.08) possibly_damaging(0.627) TCGA-F5-6814-01 3 178962446 178962446 T C KCNMB3 Missense_Mutation p.H99R 0.23 tolerated(0.24) benign(0.012) TCGA-F5-6814-01 3 179082107 179082107 G A MFN1 Missense_Mutation p.E187K 0.26 deleterious(0.04) possibly_damaging(0.803) TCGA-F5-6814-01 3 179306766 179306766 C T MRPL47 Missense_Mutation p.R216Q 0.14 tolerated(0.36) benign(0.001) TCGA-F5-6814-01 3 179399745 179399745 A C USP13 Missense_Mutation p.K83T 0.35 deleterious(0.04) probably_damaging(0.947) TCGA-F5-6814-01 3 179605499 179605499 G A PEX5L Missense_Mutation p.S91L 0.29 deleterious_low_confidence(0.03) benign(0.102) TCGA-F5-6814-01 3 180323563 180323563 C A TTC14 Missense_Mutation p.F289L 0.27 deleterious(0) possibly_damaging(0.849) TCGA-F5-6814-01 3 180323574 180323574 A G TTC14 Missense_Mutation p.D293G 0.25 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 3 180326507 180326507 G T TTC14 Nonsense_Mutation p.E437* 0.18 TCGA-F5-6814-01 3 180328105 180328105 C A TTC14 Missense_Mutation p.F696L 0.31 tolerated_low_confidence(0.65) unknown(0) TCGA-F5-6814-01 3 180332654 180332654 T C CCDC39 3'UTR 0.54 TCGA-F5-6814-01 3 180359797 180359797 C T CCDC39 Missense_Mutation p.E620K 0.32 deleterious(0) possibly_damaging(0.897) TCGA-F5-6814-01 3 180369281 180369281 T G CCDC39 Missense_Mutation p.K359Q 0.09 deleterious(0.01) possibly_damaging(0.607) TCGA-F5-6814-01 3 180372618 180372618 G A CCDC39 Missense_Mutation p.R288C 0.32 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 3 180381738 180381738 C A CCDC39 Missense_Mutation p.D43Y 0.21 deleterious(0) possibly_damaging(0.712) TCGA-F5-6814-01 3 180669140 180669140 T G FXR1 Missense_Mutation p.L229V 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 3 181431452 181431452 T G SOX2 3'UTR 0.31 TCGA-F5-6814-01 3 182553884 182553884 T C ATP11B Missense_Mutation p.V126A 0.11 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 3 182683356 182683356 C A DCUN1D1 Missense_Mutation p.K63N 0.35 tolerated(0.07) benign(0.053) TCGA-F5-6814-01 3 182991118 182991118 A C B3GNT5 3'UTR 0.45 TCGA-F5-6814-01 3 183107490 183107490 G T MCF2L2 Missense_Mutation p.L52I 0.19 deleterious(0) probably_damaging(0.953) TCGA-F5-6814-01 3 183107519 183107519 A G MCF2L2 Missense_Mutation p.I42T 0.17 tolerated(0.57) benign(0.032) TCGA-F5-6814-01 3 183210392 183210392 T G KLHL6 Missense_Mutation p.K485T 0.18 deleterious(0) possibly_damaging(0.813) TCGA-F5-6814-01 3 183211938 183211938 C T KLHL6 Missense_Mutation p.G427R 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 183273405 183273405 C T KLHL6 Missense_Mutation p.G13S 0.20 tolerated_low_confidence(0.54) benign(0.006) TCGA-F5-6814-01 3 183368751 183368751 G T KLHL24 Nonsense_Mutation p.E203* 0.17 TCGA-F5-6814-01 3 183432978 183432978 G T YEATS2 Nonsense_Mutation p.E10* 0.37 TCGA-F5-6814-01 3 183472011 183472011 A C YEATS2 Missense_Mutation p.K416N 0.11 deleterious_low_confidence(0) possibly_damaging(0.632) TCGA-F5-6814-01 3 183700586 183700586 G A ABCC5 Silent p.N267N 0.21 TCGA-F5-6814-01 3 183823624 183823624 C T HTR3E Silent p.I290I 0.51 TCGA-F5-6814-01 3 183854482 183854482 T C EIF2B5 Missense_Mutation p.V93A 0.22 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 3 183862482 183862482 G A EIF2B5 Missense_Mutation p.R698H 0.21 deleterious(0.02) probably_damaging(0.947) TCGA-F5-6814-01 3 18391097 18391097 C T SATB1 Silent p.Q651Q 0.18 TCGA-F5-6814-01 3 183954479 183954479 C T VWA5B2 Missense_Mutation p.S492F 0.35 deleterious(0) probably_damaging(0.932) TCGA-F5-6814-01 3 183996069 183996069 G A ECE2 Missense_Mutation p.D358N 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 184018090 184018090 G A PSMD2 Missense_Mutation p.R72Q 0.22 tolerated(0.31) benign(0.004) TCGA-F5-6814-01 3 184020825 184020825 C A PSMD2 Silent p.I348I 0.43 TCGA-F5-6814-01 3 184025249 184025249 C A PSMD2 Missense_Mutation p.F713L 0.57 tolerated(0.11) benign(0.061) TCGA-F5-6814-01 3 184041257 184041257 C A EIF4G1 Missense_Mutation p.A724D 0.18 tolerated(0.05) benign(0.066) TCGA-F5-6814-01 3 184042879 184042879 G T EIF4G1 Missense_Mutation p.D952Y 0.44 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 3 184290418 184290418 C T EPHB3 Missense_Mutation p.R104W 0.22 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 184631310 184631310 A C VPS8 Missense_Mutation p.E717A 0.36 tolerated(0.21) benign(0.016) TCGA-F5-6814-01 3 184911242 184911242 G T EHHADH Missense_Mutation p.S315Y 0.49 deleterious(0) possibly_damaging(0.906) TCGA-F5-6814-01 3 185165577 185165577 T C MAP3K13 Silent p.N284N 0.21 TCGA-F5-6814-01 3 185181382 185181382 A C MAP3K13 Missense_Mutation p.K441N 0.33 deleterious(0.01) benign(0.206) TCGA-F5-6814-01 3 185191243 185191243 G A MAP3K13 Nonsense_Mutation p.W708* 0.53 TCGA-F5-6814-01 3 185252805 185252805 T G LIPH Missense_Mutation p.Q55H 0.23 deleterious(0.01) probably_damaging(0.928) TCGA-F5-6814-01 3 185542654 185542654 C T IGF2BP2 Missense_Mutation p.G32E 0.24 tolerated(0.06) benign(0.032) TCGA-F5-6814-01 3 185639821 185639821 T G TRA2B Missense_Mutation p.I206L 0.17 deleterious(0.01) benign(0.172) TCGA-F5-6814-01 3 185766617 185766617 G T ETV5 Silent p.V448V 0.33 TCGA-F5-6814-01 3 185783627 185783627 C T ETV5 Silent p.E295E 0.11 TCGA-F5-6814-01 3 186024742 186024742 G A DGKG Missense_Mutation p.A31V 0.23 tolerated(1) benign(0) TCGA-F5-6814-01 3 186272081 186272081 C A TBCCD1 Missense_Mutation p.Q502H 0.25 tolerated(0.14) benign(0.002) TCGA-F5-6814-01 3 186281890 186281890 C T TBCCD1 Missense_Mutation p.E77K 0.50 deleterious(0.01) probably_damaging(0.933) TCGA-F5-6814-01 3 186282124 186282124 C T TBCCD1 5'UTR 0.40 TCGA-F5-6814-01 3 186443022 186443022 T G KNG1 Silent p.L179L 0.14 TCGA-F5-6814-01 3 186510635 186510635 G A RFC4 Missense_Mutation p.S171L 0.42 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 3 186570959 186570959 G T ADIPOQ Missense_Mutation p.G38C 0.28 tolerated(0.17) benign(0.128) TCGA-F5-6814-01 3 186965163 186965163 G A MASP1 Intron 0.45 TCGA-F5-6814-01 3 186978653 186978653 G A MASP1 Silent p.D141D 0.29 TCGA-F5-6814-01 3 187088743 187088743 C T RTP4 Missense_Mutation p.S108L 0.41 tolerated(0.28) benign(0.309) TCGA-F5-6814-01 3 189582200 189582200 C A TP63 Missense_Mutation p.F253L 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-F5-6814-01 3 189608581 189608581 C A TP63 Missense_Mutation p.F552L 0.26 tolerated(0.07) probably_damaging(0.977) TCGA-F5-6814-01 3 190338142 190338142 A C IL1RAP Missense_Mutation p.N206H 0.12 tolerated(0.39) possibly_damaging(0.694) TCGA-F5-6814-01 3 191093190 191093190 G A CCDC50 Missense_Mutation p.R263Q 0.33 tolerated(0.22) benign(0.005) TCGA-F5-6814-01 3 191098679 191098679 G T CCDC50 Missense_Mutation p.E400D 0.12 deleterious(0.01) possibly_damaging(0.681) TCGA-F5-6814-01 3 192517083 192517083 C A MB21D2 Missense_Mutation p.D190Y 0.37 deleterious(0.03) benign(0.015) TCGA-F5-6814-01 3 192980926 192980926 G T HRASLS Nonsense_Mutation p.E208* 0.09 TCGA-F5-6814-01 3 192992930 192992930 G A ATP13A5 Silent p.F1186F 0.25 TCGA-F5-6814-01 3 193031948 193031948 C A ATP13A5 Missense_Mutation p.K731N 0.12 deleterious(0) possibly_damaging(0.845) TCGA-F5-6814-01 3 193061780 193061780 A C ATP13A5 Missense_Mutation p.F293L 0.14 tolerated(0.79) benign(0.001) TCGA-F5-6814-01 3 193129970 193129970 T C ATP13A4 Missense_Mutation p.N1069D 0.16 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 3 193183915 193183915 T G ATP13A4 Missense_Mutation p.N391H 0.09 deleterious(0) probably_damaging(0.918) TCGA-F5-6814-01 3 193272596 193272596 T G ATP13A4 5'UTR 0.39 TCGA-F5-6814-01 3 194152507 194152507 A G ATP13A3 Missense_Mutation p.I787T 0.08 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 3 194154513 194154513 C T ATP13A3 Missense_Mutation p.V745I 0.18 deleterious(0.04) possibly_damaging(0.694) TCGA-F5-6814-01 3 194181558 194181558 C A ATP13A3 Missense_Mutation p.E18D 0.33 tolerated(0.07) benign(0.329) TCGA-F5-6814-01 3 195017976 195017976 C T ACAP2 Missense_Mutation p.R477Q 0.20 tolerated(1) benign(0.011) TCGA-F5-6814-01 3 19554689 19554689 C A KCNH8 Silent p.V769V 0.32 TCGA-F5-6814-01 3 19575440 19575440 G T KCNH8 Missense_Mutation p.G1058V 0.42 deleterious_low_confidence(0.01) benign(0.221) TCGA-F5-6814-01 3 195955032 195955032 G T SLC51A Missense_Mutation p.G137C 0.30 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 3 195966527 195966527 A C PCYT1A Missense_Mutation p.F263C 0.28 deleterious(0.01) possibly_damaging(0.894) TCGA-F5-6814-01 3 196534761 196534761 G A PAK2 Missense_Mutation p.D229N 0.17 deleterious(0.03) possibly_damaging(0.614) TCGA-F5-6814-01 3 196554142 196554142 T G PAK2 Missense_Mutation p.F476V 0.39 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 3 196554193 196554193 G T PAK2 Nonsense_Mutation p.E493* 0.10 TCGA-F5-6814-01 3 196612678 196612678 G A SENP5 Missense_Mutation p.G209E 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.543) TCGA-F5-6814-01 3 196650370 196650370 G A SENP5 Missense_Mutation p.R657Q 0.34 tolerated(0.06) probably_damaging(0.998) TCGA-F5-6814-01 3 196664440 196664440 C A NCBP2 Missense_Mutation p.D114Y 0.42 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 3 197428627 197428627 A C KIAA0226 Missense_Mutation p.F227V 0.29 tolerated(0.18) benign(0.003) TCGA-F5-6814-01 3 197723059 197723059 A C LMLN Missense_Mutation p.K354T 0.24 deleterious(0.04) benign(0.438) TCGA-F5-6814-01 3 19924172 19924172 C A EFHB Missense_Mutation p.R733L 0.38 tolerated(0.09) benign(0.052) TCGA-F5-6814-01 3 19924193 19924193 C T EFHB Missense_Mutation p.R726Q 0.32 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 3 19961381 19961381 C A EFHB Missense_Mutation p.D314Y 0.32 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 3 19975213 19975213 T C EFHB Missense_Mutation p.T100A 0.32 tolerated_low_confidence(0.17) benign(0.004) TCGA-F5-6814-01 3 20113930 20113930 C T KAT2B Missense_Mutation p.R137W 0.31 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 3 20187838 20187838 G A KAT2B Missense_Mutation p.A679T 0.36 tolerated(0.36) benign(0.206) TCGA-F5-6814-01 3 20187847 20187847 C T KAT2B Nonsense_Mutation p.R682* 0.32 TCGA-F5-6814-01 3 20216354 20216354 G A SGOL1 Silent p.F223F 0.30 TCGA-F5-6814-01 3 21478618 21478618 T C ZNF385D Missense_Mutation p.I173V 0.36 tolerated(0.62) benign(0) TCGA-F5-6814-01 3 23934631 23934631 A C NKIRAS1 Silent p.P178P 0.20 TCGA-F5-6814-01 3 24231684 24231684 G A THRB Missense_Mutation p.S55L 0.36 tolerated_low_confidence(0.75) benign(0) TCGA-F5-6814-01 3 25635161 25635161 A G RARB Silent p.E318E 0.19 TCGA-F5-6814-01 3 25642634 25642634 C T TOP2B Silent p.S1519S 0.45 TCGA-F5-6814-01 3 25650791 25650791 C T TOP2B Missense_Mutation p.A1321T 0.27 tolerated(0.5) benign(0.005) TCGA-F5-6814-01 3 25760843 25760843 G T NGLY1 3'UTR 0.33 TCGA-F5-6814-01 3 25770808 25770808 C A NGLY1 Missense_Mutation p.R476I 0.62 tolerated(0.11) benign(0.001) TCGA-F5-6814-01 3 25773829 25773829 C T NGLY1 Missense_Mutation p.R469Q 0.36 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 26752250 26752250 A G LRRC3B 3'UTR 0.56 TCGA-F5-6814-01 3 27157580 27157580 A G NEK10 Missense_Mutation p.Y1134H 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 3 27332169 27332169 T G NEK10 Missense_Mutation p.K561T 0.11 deleterious(0.02) possibly_damaging(0.549) TCGA-F5-6814-01 3 27439829 27439829 G A SLC4A7 Missense_Mutation p.R806C 0.26 deleterious(0.01) possibly_damaging(0.601) TCGA-F5-6814-01 3 27444822 27444822 G T SLC4A7 Missense_Mutation p.S701Y 0.38 deleterious(0) possibly_damaging(0.832) TCGA-F5-6814-01 3 27472817 27472817 C A SLC4A7 Missense_Mutation p.K365N 0.24 tolerated(0.18) benign(0.446) TCGA-F5-6814-01 3 27758999 27758999 A C EOMES Silent p.T541T 0.19 TCGA-F5-6814-01 3 28365432 28365432 A C CMC1 3'UTR 0.27 TCGA-F5-6814-01 3 28365760 28365760 A C AZI2 Missense_Mutation p.S318A 0.07 tolerated(0.54) benign(0.01) TCGA-F5-6814-01 3 28566098 28566098 G A ZCWPW2 Silent p.G330G 0.18 TCGA-F5-6814-01 3 29323236 29323236 C A RBMS3 Missense_Mutation p.L22I 0.25 tolerated_low_confidence(0.09) possibly_damaging(0.636) TCGA-F5-6814-01 3 29804456 29804456 C A RBMS3 Missense_Mutation p.L205M 0.40 deleterious(0.01) probably_damaging(0.978) TCGA-F5-6814-01 3 3084791 3084791 A C CNTN4 Missense_Mutation p.N881T 0.10 deleterious(0.02) benign(0.013) TCGA-F5-6814-01 3 3137124 3137124 T G IL5RA Missense_Mutation p.Q238H 0.38 tolerated(0.05) possibly_damaging(0.687) TCGA-F5-6814-01 3 3139663 3139663 C T IL5RA Silent p.R200R 0.37 TCGA-F5-6814-01 3 3144364 3144364 C A IL5RA Missense_Mutation p.D75Y 0.34 deleterious(0) probably_damaging(0.928) TCGA-F5-6814-01 3 3182305 3182305 G T TRNT1 Missense_Mutation p.D152Y 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 31871573 31871573 C A OSBPL10 Missense_Mutation p.A230S 0.13 tolerated(0.72) benign(0.025) TCGA-F5-6814-01 3 3195711 3195711 C A CRBN Missense_Mutation p.R295I 0.27 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 3 3196472 3196472 T C CRBN Missense_Mutation p.D265G 0.31 tolerated(0.13) benign(0.006) TCGA-F5-6814-01 3 32568361 32568361 C T DYNC1LI1 Missense_Mutation p.R501K 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-F5-6814-01 3 32754727 32754727 T G CNOT10 Missense_Mutation p.F207V 0.29 tolerated(0.23) benign(0.175) TCGA-F5-6814-01 3 32996079 32996079 C A CCR4 3'UTR 0.46 TCGA-F5-6814-01 3 33437652 33437652 A G UBP1 Splice_Site p.X464_splice 0.10 TCGA-F5-6814-01 3 33729814 33729814 C T CLASP2 Missense_Mutation p.R142Q 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 3 33731376 33731376 C T CLASP2 Missense_Mutation p.R108Q 0.39 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 3 33877666 33877666 G A PDCD6IP Missense_Mutation p.R327Q 0.09 deleterious(0.04) possibly_damaging(0.567) TCGA-F5-6814-01 3 35731595 35731595 A G ARPP21 Missense_Mutation p.M170V 0.11 deleterious(0.04) benign(0.006) TCGA-F5-6814-01 3 35756964 35756964 A C ARPP21 Missense_Mutation p.N277H 0.09 deleterious(0) possibly_damaging(0.57) TCGA-F5-6814-01 3 36874508 36874508 C T TRANK1 Missense_Mutation p.R2145Q 0.42 deleterious(0.01) benign(0.001) TCGA-F5-6814-01 3 36898545 36898545 C T TRANK1 Missense_Mutation p.E846K 0.29 deleterious(0.02) probably_damaging(0.981) TCGA-F5-6814-01 3 37032872 37032872 C T EPM2AIP1 Missense_Mutation p.R566Q 0.09 tolerated(0.35) benign(0.005) TCGA-F5-6814-01 3 37033157 37033157 A G EPM2AIP1 Missense_Mutation p.F471S 0.49 deleterious(0) probably_damaging(0.961) TCGA-F5-6814-01 3 37033161 37033161 C A EPM2AIP1 Nonsense_Mutation p.E470* 0.08 TCGA-F5-6814-01 3 37033688 37033688 A G EPM2AIP1 Missense_Mutation p.V294A 0.24 deleterious(0.04) benign(0.107) TCGA-F5-6814-01 3 37107216 37107216 T G LRRFIP2 Intron 0.57 TCGA-F5-6814-01 3 37170556 37170556 C A LRRFIP2 Nonsense_Mutation p.E59* 0.29 TCGA-F5-6814-01 3 37323699 37323699 A C GOLGA4 Missense_Mutation p.Q160P 0.32 probably_damaging(0.956) TCGA-F5-6814-01 3 37356965 37356965 G A GOLGA4 Missense_Mutation p.R452Q 0.21 benign(0.178) TCGA-F5-6814-01 3 37365337 37365337 G T GOLGA4 Nonsense_Mutation p.E676* 0.36 TCGA-F5-6814-01 3 37365360 37365360 G T GOLGA4 Missense_Mutation p.E683D 0.35 possibly_damaging(0.508) TCGA-F5-6814-01 3 37365408 37365408 A C GOLGA4 Missense_Mutation p.E699D 0.36 probably_damaging(0.995) TCGA-F5-6814-01 3 37368058 37368058 G T GOLGA4 Nonsense_Mutation p.E1583* 0.31 TCGA-F5-6814-01 3 37512607 37512607 G A ITGA9 Missense_Mutation p.E99K 0.76 tolerated(0.07) probably_damaging(0.922) TCGA-F5-6814-01 3 38039009 38039009 A G VILL Silent p.E199E 0.17 TCGA-F5-6814-01 3 38307574 38307574 G A SLC22A13 Missense_Mutation p.D75N 0.25 tolerated(0.28) benign(0.014) TCGA-F5-6814-01 3 38347490 38347490 G A SLC22A14 5'UTR 0.28 TCGA-F5-6814-01 3 38354569 38354569 A C SLC22A14 Missense_Mutation p.S342R 0.10 tolerated(0.17) possibly_damaging(0.627) TCGA-F5-6814-01 3 38595795 38595795 G A SCN5A Silent p.F1596F 0.28 TCGA-F5-6814-01 3 38627473 38627473 G A SCN5A Silent p.I832I 0.29 TCGA-F5-6814-01 3 38640455 38640455 C T SCN5A Silent p.R659R 0.19 TCGA-F5-6814-01 3 38647508 38647508 G A SCN5A Silent p.I424I 0.45 TCGA-F5-6814-01 3 38649684 38649684 C T SCN5A Missense_Mutation p.G319D 0.54 tolerated(0.05) probably_damaging(1) TCGA-F5-6814-01 3 38751073 38751073 A G SCN10A Missense_Mutation p.Y1393H 0.29 deleterious(0.01) probably_damaging(0.989) TCGA-F5-6814-01 3 3886270 3886270 T G LRRN1 5'UTR 0.26 TCGA-F5-6814-01 3 3887225 3887225 C T LRRN1 Silent p.L300L 0.23 TCGA-F5-6814-01 3 3889183 3889183 C A LRRN1 3'UTR 0.34 TCGA-F5-6814-01 3 38968336 38968336 C T SCN11A Missense_Mutation p.R192Q 0.32 deleterious(0.04) probably_damaging(1) TCGA-F5-6814-01 3 39161417 39161417 C A TTC21A Missense_Mutation p.T277N 0.32 deleterious(0.03) benign(0.14) TCGA-F5-6814-01 3 39180320 39180320 A G TTC21A 3'UTR 0.54 TCGA-F5-6814-01 3 39229934 39229934 G T XIRP1 Missense_Mutation p.L335I 0.39 tolerated(0.19) possibly_damaging(0.866) TCGA-F5-6814-01 3 40085687 40085687 T G MYRIP Missense_Mutation p.F86C 0.28 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 3 403385 403385 T C CHL1 Missense_Mutation p.V437A 0.40 tolerated(0.19) benign(0.011) TCGA-F5-6814-01 3 41266129 41266129 A G CTNNB1 Silent p.T42T 0.48 TCGA-F5-6814-01 3 41275255 41275255 G A CTNNB1 Missense_Mutation p.R474Q 0.12 deleterious(0.02) benign(0.445) TCGA-F5-6814-01 3 41277291 41277291 G A CTNNB1 Missense_Mutation p.R587Q 0.32 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 3 41277310 41277310 A G CTNNB1 Silent p.L593L 0.37 TCGA-F5-6814-01 3 41607517 41607517 T G ULK4 Missense_Mutation p.Q1075H 0.10 deleterious(0.02) benign(0.064) TCGA-F5-6814-01 3 41960000 41960000 C A ULK4 Nonsense_Mutation p.E226* 0.40 TCGA-F5-6814-01 3 42576545 42576545 T G VIPR1 Missense_Mutation p.N363K 0.27 deleterious(0.03) probably_damaging(0.955) TCGA-F5-6814-01 3 42680124 42680124 G A NKTR Silent p.K976K 0.23 TCGA-F5-6814-01 3 42781295 42781295 G T CCDC13 Missense_Mutation p.A332D 0.29 deleterious(0.01) benign(0.394) TCGA-F5-6814-01 3 42788795 42788795 C T CCDC13 Missense_Mutation p.R225Q 0.24 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 42798677 42798677 C T CCDC13 Missense_Mutation p.R84Q 0.18 tolerated(0.9) probably_damaging(1) TCGA-F5-6814-01 3 43344846 43344846 A C SNRK Missense_Mutation p.K51Q 0.09 tolerated(0.22) probably_damaging(0.998) TCGA-F5-6814-01 3 43618351 43618351 A G ANO10 Missense_Mutation p.V332A 0.13 tolerated(0.07) benign(0.347) TCGA-F5-6814-01 3 43641980 43641980 C A ANO10 Missense_Mutation p.R78I 0.23 deleterious(0.01) benign(0.318) TCGA-F5-6814-01 3 43744044 43744044 C A ABHD5 Missense_Mutation p.F157L 0.29 deleterious(0) possibly_damaging(0.588) TCGA-F5-6814-01 3 44284773 44284773 T G TOPAZ1 Missense_Mutation p.F259V 0.43 deleterious(0.03) benign(0.02) TCGA-F5-6814-01 3 44346712 44346712 T G TOPAZ1 Missense_Mutation p.F1313C 0.08 deleterious(0.02) probably_damaging(0.956) TCGA-F5-6814-01 3 44409082 44409082 G T TCAIM Nonsense_Mutation p.E152* 0.24 TCGA-F5-6814-01 3 44496775 44496775 G A ZNF445 Silent p.L89L 0.41 TCGA-F5-6814-01 3 44496992 44496992 G A ZNF445 Missense_Mutation p.S17L 0.18 deleterious_low_confidence(0.04) benign(0.32) TCGA-F5-6814-01 3 44598916 44598916 T C ZKSCAN7 Missense_Mutation p.V126A 0.12 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 3 44611637 44611637 T A ZKSCAN7 Missense_Mutation p.D345E 0.42 tolerated(0.25) benign(0.031) TCGA-F5-6814-01 3 44611660 44611660 G A ZKSCAN7 Missense_Mutation p.R353K 0.42 tolerated(0.57) benign(0.007) TCGA-F5-6814-01 3 44611771 44611771 A G ZKSCAN7 Missense_Mutation p.K390R 0.28 tolerated(0.11) benign(0.323) TCGA-F5-6814-01 3 44611810 44611810 G T ZKSCAN7 Missense_Mutation p.R403I 0.14 deleterious(0.05) probably_damaging(0.921) TCGA-F5-6814-01 3 44612398 44612398 G A ZKSCAN7 Missense_Mutation p.R599Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 44612401 44612401 T C ZKSCAN7 Missense_Mutation p.I600T 0.10 tolerated(0.14) possibly_damaging(0.72) TCGA-F5-6814-01 3 44612650 44612650 G T ZKSCAN7 Missense_Mutation p.R683I 0.41 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 44636125 44636125 C T ZNF660 Missense_Mutation p.S147L 0.24 deleterious(0.01) probably_damaging(0.92) TCGA-F5-6814-01 3 44637121 44637121 T G ZNF660 3'UTR 0.16 TCGA-F5-6814-01 3 44685451 44685451 G A ZNF197 Silent p.R943R 0.10 TCGA-F5-6814-01 3 44685661 44685661 C A ZNF197 Missense_Mutation p.F1013L 0.32 tolerated_low_confidence(0.8) benign(0.002) TCGA-F5-6814-01 3 447450 447450 T C CHL1 3'UTR 0.22 TCGA-F5-6814-01 3 44762597 44762597 A C ZNF502 Missense_Mutation p.E96D 0.38 tolerated(0.17) benign(0) TCGA-F5-6814-01 3 44762802 44762802 A G ZNF502 Missense_Mutation p.T165A 0.22 tolerated(0.19) benign(0.007) TCGA-F5-6814-01 3 44763223 44763223 G A ZNF502 Missense_Mutation p.R305Q 0.14 tolerated(0.19) benign(0.325) TCGA-F5-6814-01 3 44775882 44775882 C A ZNF501 5'UTR 0.34 TCGA-F5-6814-01 3 44776126 44776126 T G ZNF501 Missense_Mutation p.I71M 0.12 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-F5-6814-01 3 44776854 44776854 T G ZNF501 3'UTR 0.10 TCGA-F5-6814-01 3 44777760 44777760 G T ZNF501 3'UTR 0.21 TCGA-F5-6814-01 3 44794897 44794897 T C KIAA1143 Missense_Mutation p.N134S 0.09 tolerated(0.54) benign(0.01) TCGA-F5-6814-01 3 44847442 44847442 T C KIF15 Silent p.V645V 0.37 TCGA-F5-6814-01 3 44905702 44905702 T G TMEM42 Nonsense_Mutation p.L69* 0.35 TCGA-F5-6814-01 3 44968101 44968101 T G ZDHHC3 3'UTR 0.22 TCGA-F5-6814-01 3 44986754 44986754 C A ZDHHC3 Nonsense_Mutation p.E113* 0.36 TCGA-F5-6814-01 3 45870103 45870103 A G LZTFL1 Missense_Mutation p.F202S 0.25 tolerated(0.43) benign(0.002) TCGA-F5-6814-01 3 45942477 45942477 A G CCR9 Missense_Mutation p.N66S 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 45942515 45942515 G T CCR9 Missense_Mutation p.V79L 0.26 tolerated(1) benign(0.004) TCGA-F5-6814-01 3 45942783 45942783 T G CCR9 Missense_Mutation p.V168G 0.12 deleterious(0.02) benign(0.072) TCGA-F5-6814-01 3 46062662 46062662 C T XCR1 Missense_Mutation p.E260K 0.55 tolerated(0.07) benign(0.024) TCGA-F5-6814-01 3 46245237 46245237 C T CCR1 Missense_Mutation p.E190K 0.20 tolerated(0.35) benign(0.036) TCGA-F5-6814-01 3 46307007 46307007 G A CCR3 Missense_Mutation p.E141K 0.17 deleterious(0.04) possibly_damaging(0.837) TCGA-F5-6814-01 3 46399575 46399575 C A CCR2 Missense_Mutation p.S186Y 0.41 tolerated(0.11) benign(0.03) TCGA-F5-6814-01 3 46400420 46400420 C A CCR2 Intron 0.30 TCGA-F5-6814-01 3 46415698 46415698 T C CCR5 3'UTR 0.27 TCGA-F5-6814-01 3 46415794 46415794 T G CCR5 3'UTR 0.23 TCGA-F5-6814-01 3 46449143 46449143 T G CCRL2 5'UTR 0.42 TCGA-F5-6814-01 3 46449854 46449854 C T CCRL2 Missense_Mutation p.A107V 0.10 tolerated(0.09) benign(0.394) TCGA-F5-6814-01 3 46491511 46491511 A G LTF Missense_Mutation p.F297S 0.52 deleterious(0.01) probably_damaging(0.966) TCGA-F5-6814-01 3 46753760 46753760 G T PRSS50 Silent p.P378P 0.18 TCGA-F5-6814-01 3 4685885 4685885 C T ITPR1 Silent p.S197S 0.24 TCGA-F5-6814-01 3 47041754 47041754 C T NBEAL2 Missense_Mutation p.P1389S 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 47049635 47049635 G C NBEAL2 Missense_Mutation p.A2560P 0.13 deleterious(0.01) probably_damaging(0.979) TCGA-F5-6814-01 3 47162444 47162444 T C SETD2 Missense_Mutation p.S1228G 0.16 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 3 47165968 47165968 C T SETD2 Missense_Mutation p.R53Q 0.07 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 3 47270116 47270116 T C KIF9 3'UTR 0.16 TCGA-F5-6814-01 3 4730236 4730236 T G ITPR1 Missense_Mutation p.F1239V 0.13 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 3 47603995 47603995 A C CSPG5 3'UTR 0.14 TCGA-F5-6814-01 3 47747980 47747980 G A SMARCC1 Missense_Mutation p.A320V 0.31 tolerated(0.22) benign(0.009) TCGA-F5-6814-01 3 47779571 47779571 C T SMARCC1 Missense_Mutation p.R144Q 0.22 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 3 47883135 47883135 G A DHX30 Missense_Mutation p.D233N 0.24 tolerated(0.97) benign(0.001) TCGA-F5-6814-01 3 47890176 47890176 G A DHX30 Missense_Mutation p.D880N 0.20 tolerated(0.11) possibly_damaging(0.787) TCGA-F5-6814-01 3 4836803 4836803 C T ITPR1 Missense_Mutation p.S2273L 0.37 tolerated(0.2) benign(0.283) TCGA-F5-6814-01 3 48474458 48474458 C A CCDC51 Missense_Mutation p.R199M 0.38 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 3 48683584 48683584 G A CELSR3 Missense_Mutation p.R2468C 0.43 deleterious(0.04) possibly_damaging(0.556) TCGA-F5-6814-01 3 48719141 48719141 T C NCKIPSD Missense_Mutation p.D224G 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-F5-6814-01 3 48802501 48802501 C T PRKAR2A Missense_Mutation p.R270Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 48965099 48965099 G A ARIH2 Silent p.E36E 0.32 TCGA-F5-6814-01 3 49011189 49011189 G C ARIH2 Missense_Mutation p.W276C 0.13 deleterious(0) probably_damaging(0.947) TCGA-F5-6814-01 3 49042358 49042358 C T P4HTM Nonsense_Mutation p.R318* 0.24 TCGA-F5-6814-01 3 49169553 49169553 A C LAMB2 Missense_Mutation p.F152C 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 49200529 49200529 C T CCDC71 Silent p.K371K 0.09 TCGA-F5-6814-01 3 49457764 49457764 C T AMT Silent p.S117S 0.17 TCGA-F5-6814-01 3 49548117 49548117 G A DAG1 Missense_Mutation p.M50I 0.19 tolerated(0.25) benign(0.206) TCGA-F5-6814-01 3 49662699 49662699 A G BSN Missense_Mutation p.I172M 0.50 unknown(0) TCGA-F5-6814-01 3 49691844 49691844 C T BSN Missense_Mutation p.P1619S 0.33 unknown(0) TCGA-F5-6814-01 3 49698327 49698327 C T BSN Missense_Mutation p.L3017F 0.50 unknown(0) TCGA-F5-6814-01 3 49720107 49720107 C T APEH Silent p.C607C 0.34 TCGA-F5-6814-01 3 49724857 49724857 G A MST1 Missense_Mutation p.A137V 0.28 deleterious(0.02) possibly_damaging(0.559) TCGA-F5-6814-01 3 49736538 49736538 G A RNF123 Missense_Mutation p.R255H 0.28 tolerated(0.05) possibly_damaging(0.839) TCGA-F5-6814-01 3 49742114 49742114 C T RNF123 Silent p.I628I 0.12 TCGA-F5-6814-01 3 49847446 49847446 G A UBA7 Missense_Mutation p.R602W 0.37 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 50255729 50255729 C A SLC38A3 RNA 0.09 TCGA-F5-6814-01 3 50294398 50294398 C T GNAI2 Silent p.F251F 0.22 TCGA-F5-6814-01 3 50404494 50404494 G A CACNA2D2 Silent p.L823L 0.19 TCGA-F5-6814-01 3 50598434 50598434 C A C3orf18 Missense_Mutation p.D108Y 0.17 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 3 51263178 51263178 C T DOCK3 Missense_Mutation p.L451F 0.30 tolerated(0.07) probably_damaging(0.943) TCGA-F5-6814-01 3 51386367 51386367 C T DOCK3 Missense_Mutation p.R1334W 0.65 deleterious(0.03) probably_damaging(0.939) TCGA-F5-6814-01 3 51451487 51451487 C T VPRBP Missense_Mutation p.R854Q 0.09 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 51457364 51457364 C A VPRBP Missense_Mutation p.K591N 0.13 tolerated(0.07) possibly_damaging(0.586) TCGA-F5-6814-01 3 51708325 51708325 C T TEX264 Missense_Mutation p.S2L 0.45 deleterious(0) unknown(0) TCGA-F5-6814-01 3 51812987 51812987 C A IQCF6 5'UTR 0.47 TCGA-F5-6814-01 3 52097298 52097298 C T LINC00696 Silent p.T90T 0.34 TCGA-F5-6814-01 3 52109878 52109878 G A POC1A 3'UTR 0.21 TCGA-F5-6814-01 3 5220469 5220469 T C ARL8B 3'UTR 0.20 TCGA-F5-6814-01 3 52245344 52245344 C A ALAS1 Missense_Mutation p.S459Y 0.34 tolerated(0.07) possibly_damaging(0.701) TCGA-F5-6814-01 3 52381849 52381849 G T DNAH1 Missense_Mutation p.K655N 0.29 benign(0.015) TCGA-F5-6814-01 3 52383052 52383052 G A DNAH1 Missense_Mutation p.R752Q 0.27 benign(0.002) TCGA-F5-6814-01 3 52387644 52387644 G A DNAH1 Missense_Mutation p.E1159K 0.56 possibly_damaging(0.906) TCGA-F5-6814-01 3 52417457 52417457 T C DNAH1 Missense_Mutation p.I2666T 0.13 possibly_damaging(0.593) TCGA-F5-6814-01 3 52427469 52427469 C T DNAH1 Missense_Mutation p.R3532C 0.20 probably_damaging(0.953) TCGA-F5-6814-01 3 52472959 52472959 C T SEMA3G Missense_Mutation p.E496K 0.39 deleterious(0.02) benign(0.228) TCGA-F5-6814-01 3 52492713 52492713 T C NISCH Silent p.L71L 0.29 TCGA-F5-6814-01 3 5252888 5252888 A C EDEM1 Missense_Mutation p.K556T 0.21 deleterious(0.01) probably_damaging(0.967) TCGA-F5-6814-01 3 52540233 52540233 G A STAB1 Silent p.A599A 0.35 TCGA-F5-6814-01 3 52610695 52610695 G A PBRM1 Nonsense_Mutation p.R1160* 0.18 TCGA-F5-6814-01 3 52637690 52637690 G A PBRM1 Missense_Mutation p.R876C 0.30 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 3 52662972 52662972 G A PBRM1 Missense_Mutation p.R461C 0.27 deleterious(0.03) probably_damaging(0.985) TCGA-F5-6814-01 3 52668677 52668677 C A PBRM1 Missense_Mutation p.K414N 0.42 deleterious(0.01) possibly_damaging(0.645) TCGA-F5-6814-01 3 52812410 52812410 C T ITIH1 Missense_Mutation p.R65C 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 52816170 52816170 G A ITIH1 Missense_Mutation p.A273T 0.34 deleterious(0.03) benign(0.018) TCGA-F5-6814-01 3 53765117 53765117 G T CACNA1D Nonsense_Mutation p.E804* 0.11 TCGA-F5-6814-01 3 53783314 53783314 G A CACNA1D Missense_Mutation p.D1132N 0.19 deleterious(0.02) probably_damaging(0.983) TCGA-F5-6814-01 3 53902804 53902804 C T ACTR8 Missense_Mutation p.R606Q 0.39 tolerated(0.49) probably_damaging(0.915) TCGA-F5-6814-01 3 54354512 54354512 A G CACNA2D3 Missense_Mutation p.D83G 0.41 deleterious(0) possibly_damaging(0.906) TCGA-F5-6814-01 3 54604005 54604005 G A CACNA2D3 Silent p.P254P 0.24 TCGA-F5-6814-01 3 54604012 54604012 G A CACNA2D3 Missense_Mutation p.V257M 0.38 tolerated(0.09) probably_damaging(0.995) TCGA-F5-6814-01 3 54921994 54921994 G T CACNA2D3 Nonsense_Mutation p.E689* 0.24 TCGA-F5-6814-01 3 54952519 54952519 T G LRTM1 Missense_Mutation p.E335D 0.10 tolerated(0.22) benign(0.014) TCGA-F5-6814-01 3 55018656 55018656 G T CACNA2D3 Missense_Mutation p.D860Y 0.29 deleterious(0) benign(0.347) TCGA-F5-6814-01 3 55041824 55041824 A G CACNA2D3 Missense_Mutation p.N925S 0.23 tolerated(0.73) benign(0.016) TCGA-F5-6814-01 3 56183135 56183135 C T ERC2 Missense_Mutation p.R392Q 0.22 deleterious(0.01) probably_damaging(0.909) TCGA-F5-6814-01 3 56597758 56597758 C A CCDC66 Missense_Mutation p.T50N 0.42 tolerated(0.08) benign(0.066) TCGA-F5-6814-01 3 56647694 56647694 A C CCDC66 Missense_Mutation p.Q494H 0.08 deleterious(0.03) possibly_damaging(0.834) TCGA-F5-6814-01 3 56653888 56653888 C T CCDC66 Nonsense_Mutation p.R907* 0.44 TCGA-F5-6814-01 3 56680885 56680885 C A FAM208A Missense_Mutation p.R627I 0.39 deleterious(0) benign(0.361) TCGA-F5-6814-01 3 56789060 56789060 G A ARHGEF3 Silent p.F140F 0.45 TCGA-F5-6814-01 3 57232174 57232174 A C HESX1 3'UTR 0.20 TCGA-F5-6814-01 3 57302631 57302631 T C ASB14 3'UTR 0.19 TCGA-F5-6814-01 3 57343855 57343855 T G DNAH12 Missense_Mutation p.I361L 0.13 deleterious(0) benign(0.107) TCGA-F5-6814-01 3 57407352 57407352 G A DNAH12 Nonsense_Mutation p.R1800* 0.24 TCGA-F5-6814-01 3 57440587 57440587 C T DNAH12 Missense_Mutation p.R1101Q 0.30 tolerated(0.29) benign(0.238) TCGA-F5-6814-01 3 57475406 57475406 T G Y_RNA 5'Flank 0.23 TCGA-F5-6814-01 3 57488070 57488070 C A DNAH12 Missense_Mutation p.R408I 0.14 deleterious(0.01) benign(0.052) TCGA-F5-6814-01 3 57489844 57489844 C A DNAH12 Nonsense_Mutation p.E329* 0.40 TCGA-F5-6814-01 3 58127628 58127628 A C FLNB Missense_Mutation p.N1749T 0.20 tolerated(0.65) benign(0.034) TCGA-F5-6814-01 3 58128383 58128383 G A FLNB Missense_Mutation p.E1761K 0.26 tolerated(0.2) benign(0.154) TCGA-F5-6814-01 3 58154183 58154183 C A FLNB Missense_Mutation p.F2436L 0.29 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 3 58156239 58156239 T C FLNB Intron 0.21 TCGA-F5-6814-01 3 58178532 58178532 T C DNASE1L3 Splice_Site p.X268_splice 0.08 TCGA-F5-6814-01 3 58242398 58242398 C A ABHD6 Missense_Mutation p.L29M 0.26 tolerated(0.06) benign(0.139) TCGA-F5-6814-01 3 58382924 58382924 C A PXK Silent p.I327I 0.17 TCGA-F5-6814-01 3 58395340 58395340 C A PXK Silent p.R464R 0.59 TCGA-F5-6814-01 3 58487000 58487000 G T KCTD6 Nonsense_Mutation p.E119* 0.28 TCGA-F5-6814-01 3 59997117 59997117 C T FHIT Missense_Mutation p.E87K 0.17 deleterious(0.02) possibly_damaging(0.636) TCGA-F5-6814-01 3 62318981 62318981 C A C3orf14 Missense_Mutation p.L102I 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 3 62451053 62451053 G T CADPS Missense_Mutation p.L1209M 0.19 deleterious(0.03) possibly_damaging(0.665) TCGA-F5-6814-01 3 62459954 62459954 C T CADPS Missense_Mutation p.R1124Q 0.20 deleterious(0.04) benign(0.238) TCGA-F5-6814-01 3 62501749 62501749 A G CADPS Missense_Mutation p.Y856H 0.27 tolerated(0.08) possibly_damaging(0.727) TCGA-F5-6814-01 3 63600911 63600911 C A SYNPR Missense_Mutation p.F204L 0.26 deleterious(0) benign(0.384) TCGA-F5-6814-01 3 63601047 63601047 G T SYNPR Missense_Mutation p.D250Y 0.27 deleterious(0) possibly_damaging(0.736) TCGA-F5-6814-01 3 64518894 64518894 G A ADAMTS9 Missense_Mutation p.A1889V 0.31 tolerated(0.28) benign(0.091) TCGA-F5-6814-01 3 65415473 65415473 G T MAGI1 Missense_Mutation p.S630Y 0.42 deleterious(0) probably_damaging(0.935) TCGA-F5-6814-01 3 66430926 66430926 A G SLC25A26 3'Flank 0.23 TCGA-F5-6814-01 3 66465372 66465372 C T LRIG1 Missense_Mutation p.A207T 0.28 tolerated(0.42) benign(0.3) TCGA-F5-6814-01 3 67053843 67053843 A C KBTBD8 Missense_Mutation p.N151T 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 3 67054634 67054634 G A KBTBD8 Missense_Mutation p.D415N 0.39 tolerated(0.1) probably_damaging(0.972) TCGA-F5-6814-01 3 68466478 68466478 A C FAM19A1 Missense_Mutation p.N56T 0.36 deleterious(0.01) probably_damaging(0.992) TCGA-F5-6814-01 3 69074718 69074718 T G TMF1 Missense_Mutation p.H1002P 0.14 deleterious(0.01) possibly_damaging(0.864) TCGA-F5-6814-01 3 69097306 69097306 C A TMF1 Nonsense_Mutation p.E184* 0.36 TCGA-F5-6814-01 3 69985778 69985778 C A MITF Intron 0.40 TCGA-F5-6814-01 3 71759598 71759598 T G EIF4E3 Missense_Mutation p.N72H 0.08 deleterious(0.01) benign(0.376) TCGA-F5-6814-01 3 71804061 71804061 C T GPR27 Silent p.Y287Y 0.33 TCGA-F5-6814-01 3 72893512 72893512 T G SHQ1 Missense_Mutation p.K69T 0.34 tolerated(0.11) benign(0.157) TCGA-F5-6814-01 3 73004252 73004252 A G GXYLT2 Missense_Mutation p.I202V 0.41 tolerated(0.13) benign(0.074) TCGA-F5-6814-01 3 73111106 73111106 A C EBLN2 5'UTR 0.36 TCGA-F5-6814-01 3 73111783 73111783 G A EBLN2 Missense_Mutation p.R184H 0.40 tolerated_low_confidence(0.34) possibly_damaging(0.812) TCGA-F5-6814-01 3 73114568 73114568 G A PPP4R2 Missense_Mutation p.E317K 0.48 tolerated(0.05) benign(0.235) TCGA-F5-6814-01 3 73657755 73657755 C T PDZRN3 Silent p.P268P 0.32 TCGA-F5-6814-01 3 75476973 75476973 G C FAM86DP RNA 0.17 TCGA-F5-6814-01 3 75680005 75680005 C T MIR1324 RNA 0.13 TCGA-F5-6814-01 3 7620981 7620981 G A GRM7 Silent p.T796T 0.10 TCGA-F5-6814-01 3 77595518 77595518 G T ROBO2 Missense_Mutation p.D338Y 0.16 deleterious(0) probably_damaging(0.961) TCGA-F5-6814-01 3 77614150 77614150 G T ROBO2 Missense_Mutation p.K592N 0.25 deleterious(0) possibly_damaging(0.758) TCGA-F5-6814-01 3 77666773 77666773 C T ROBO2 Nonsense_Mutation p.R1151* 0.57 TCGA-F5-6814-01 3 78649406 78649406 C A ROBO1 Missense_Mutation p.D1600Y 0.31 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-F5-6814-01 3 78688943 78688943 C T ROBO1 Silent p.T996T 0.32 TCGA-F5-6814-01 3 78700920 78700920 C A ROBO1 Missense_Mutation p.R925I 0.13 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 3 78737914 78737914 G T ROBO1 Missense_Mutation p.H352N 0.42 deleterious(0.03) probably_damaging(0.983) TCGA-F5-6814-01 3 78763653 78763653 A G ROBO1 Silent p.H313H 0.44 TCGA-F5-6814-01 3 81586159 81586159 A C GBE1 Nonsense_Mutation p.L569* 0.21 TCGA-F5-6814-01 3 8667234 8667234 G A SSUH2 Silent p.N289N 0.41 TCGA-F5-6814-01 3 8672541 8672541 A G SSUH2 Missense_Mutation p.F159L 0.42 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 86996080 86996080 C T VGLL3 3'UTR 0.27 TCGA-F5-6814-01 3 87313465 87313465 C A POU1F1 Nonsense_Mutation p.E164* 0.31 TCGA-F5-6814-01 3 87313638 87313638 T G POU1F1 Missense_Mutation p.K106T 0.29 deleterious(0) possibly_damaging(0.76) TCGA-F5-6814-01 3 88188716 88188716 T G ZNF654 Missense_Mutation p.S86A 0.17 tolerated(0.11) benign(0.075) TCGA-F5-6814-01 3 88189242 88189242 G A ZNF654 Missense_Mutation p.R261K 0.13 tolerated(0.11) possibly_damaging(0.804) TCGA-F5-6814-01 3 89259138 89259138 G T EPHA3 Missense_Mutation p.K94N 0.40 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 3 89259340 89259340 C T EPHA3 Silent p.L162L 0.24 TCGA-F5-6814-01 3 89259456 89259456 A C EPHA3 Missense_Mutation p.K200N 0.36 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 3 93593063 93593063 G T PROS1 3'UTR 0.09 TCGA-F5-6814-01 3 93593070 93593070 T C PROS1 3'UTR 0.09 TCGA-F5-6814-01 3 93780135 93780135 A C DHFRL1 Nonsense_Mutation p.L74* 0.24 TCGA-F5-6814-01 3 9419536 9419536 C T THUMPD3 Silent p.V324V 0.23 TCGA-F5-6814-01 3 9426409 9426409 A C THUMPD3 3'UTR 0.48 TCGA-F5-6814-01 3 9482376 9482376 A G SETD5 Silent p.Q268Q 0.19 TCGA-F5-6814-01 3 9516818 9516818 G A SETD5 Missense_Mutation p.S1233N 0.08 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 3 95373880 95373880 G A MTHFD2P1 RNA 0.33 TCGA-F5-6814-01 3 96533592 96533592 G A EPHA6 Missense_Mutation p.R42H 0.38 tolerated_low_confidence(0.12) possibly_damaging(0.715) TCGA-F5-6814-01 3 96706372 96706372 G T EPHA6 Nonsense_Mutation p.E217* 0.21 TCGA-F5-6814-01 3 97356786 97356786 T C EPHA6 Missense_Mutation p.Y882H 0.15 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 3 97454885 97454885 T G EPHA6 Missense_Mutation p.F1017L 0.40 deleterious(0.02) probably_damaging(0.994) TCGA-F5-6814-01 3 97614810 97614810 G A CRYBG3 Missense_Mutation p.A580T 0.29 deleterious(0.02) probably_damaging(0.943) TCGA-F5-6814-01 3 97614841 97614841 A G CRYBG3 Missense_Mutation p.Q590R 0.09 deleterious(0) possibly_damaging(0.898) TCGA-F5-6814-01 3 97655739 97655739 G A CRYBG3 Missense_Mutation p.R883H 0.35 deleterious(0.02) possibly_damaging(0.806) TCGA-F5-6814-01 3 97659991 97659991 G A CRYBG3 Splice_Site p.X888_splice 0.22 TCGA-F5-6814-01 3 97686052 97686052 T C MINA Missense_Mutation p.D129G 0.24 tolerated(0.09) benign(0.03) TCGA-F5-6814-01 3 97731356 97731356 A C GABRR3 Intron 0.40 TCGA-F5-6814-01 3 97744433 97744433 G A GABRR3 RNA 0.28 TCGA-F5-6814-01 3 97806311 97806311 T C OR5AC2 Missense_Mutation p.C99R 0.06 deleterious(0) benign(0.32) TCGA-F5-6814-01 3 97868416 97868416 C A OR5H14 Missense_Mutation p.L63I 0.12 deleterious(0) possibly_damaging(0.601) TCGA-F5-6814-01 3 97983479 97983479 T G OR5H6 Missense_Mutation p.F117L 0.28 deleterious(0.04) benign(0.011) TCGA-F5-6814-01 3 98109845 98109845 C A OR5K3 Nonsense_Mutation p.C112* 0.13 TCGA-F5-6814-01 3 98217188 98217188 C A OR5K2 Missense_Mutation p.L222I 0.31 tolerated(0.05) benign(0.439) TCGA-F5-6814-01 3 98240650 98240650 G T CLDND1 Intron 0.48 TCGA-F5-6814-01 3 98251255 98251255 C A GPR15 Nonsense_Mutation p.C126* 0.43 TCGA-F5-6814-01 3 98251374 98251374 T C GPR15 Missense_Mutation p.L166S 0.16 tolerated(0.07) possibly_damaging(0.893) TCGA-F5-6814-01 3 98600422 98600422 C A DCBLD2 Missense_Mutation p.R132I 0.10 tolerated(0.09) benign(0.395) TCGA-F5-6814-01 3 9882488 9882488 C A RPUSD3 Nonsense_Mutation p.E137* 0.18 TCGA-F5-6814-01 3 99567492 99567492 A C FILIP1L Missense_Mutation p.S1010A 0.22 tolerated(0.2) benign(0.103) TCGA-F5-6814-01 3 99567993 99567993 A C FILIP1L Missense_Mutation p.S843A 0.46 tolerated(0.64) benign(0.002) TCGA-F5-6814-01 3 99643129 99643129 C A FILIP1L Nonsense_Mutation p.E184* 0.36 TCGA-F5-6814-01 3 99649823 99649823 C A FILIP1L Missense_Mutation p.K14N 0.09 tolerated(0.5) benign(0.043) TCGA-F5-6814-01 4 100268965 100268965 C A ADH1C Missense_Mutation p.K19N 0.13 benign(0) TCGA-F5-6814-01 4 100530116 100530116 G A MTTP Missense_Mutation p.R584H 0.26 tolerated(0.44) benign(0.001) TCGA-F5-6814-01 4 1017431 1017431 G T FGFRL1 Missense_Mutation p.D119Y 0.13 deleterious(0) possibly_damaging(0.612) TCGA-F5-6814-01 4 102816556 102816556 C A BANK1 Missense_Mutation p.S333Y 0.23 tolerated(1) benign(0.438) TCGA-F5-6814-01 4 103516052 103516052 A C NFKB1 Missense_Mutation p.Y405S 0.19 tolerated(0.13) benign(0.287) TCGA-F5-6814-01 4 103517468 103517468 G T NFKB1 Nonsense_Mutation p.E492* 0.34 TCGA-F5-6814-01 4 103595205 103595205 A C MANBA Missense_Mutation p.L328R 0.26 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 103720655 103720655 G T UBE2D3 Missense_Mutation p.L105I 0.12 deleterious_low_confidence(0) possibly_damaging(0.69) TCGA-F5-6814-01 4 103947618 103947618 A C SLC9B2 Missense_Mutation p.L508R 0.14 deleterious(0) probably_damaging(0.938) TCGA-F5-6814-01 4 103950001 103950001 C T SLC9B2 Missense_Mutation p.R432Q 0.44 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 4 104030157 104030157 G T CENPE Missense_Mutation p.S2605Y 0.09 possibly_damaging(0.794) TCGA-F5-6814-01 4 104032041 104032041 A C CENPE Missense_Mutation p.I2556M 0.30 benign(0.019) TCGA-F5-6814-01 4 10445355 10445355 T C ZNF518B Silent p.G866G 0.19 TCGA-F5-6814-01 4 10445403 10445403 C A ZNF518B Missense_Mutation p.E850D 0.24 tolerated(0.06) benign(0.038) TCGA-F5-6814-01 4 10447326 10447326 C T ZNF518B Silent p.T209T 0.58 TCGA-F5-6814-01 4 10447680 10447680 G A ZNF518B Silent p.L91L 0.66 TCGA-F5-6814-01 4 10515119 10515119 C A CLNK Missense_Mutation p.R292I 0.26 deleterious(0.01) possibly_damaging(0.794) TCGA-F5-6814-01 4 106157446 106157446 G T TET2 Nonsense_Mutation p.E783* 0.29 TCGA-F5-6814-01 4 106157799 106157799 A C TET2 Missense_Mutation p.K900N 0.15 tolerated(0.25) benign(0.008) TCGA-F5-6814-01 4 106161906 106161906 G T TET2 Intron 0.21 TCGA-F5-6814-01 4 106162255 106162255 T G TET2 Intron 0.10 TCGA-F5-6814-01 4 106162847 106162847 C T TET2 Intron 0.30 TCGA-F5-6814-01 4 106374771 106374771 C T PPA2 Missense_Mutation p.R84Q 0.23 tolerated(0.14) benign(0.029) TCGA-F5-6814-01 4 106604454 106604454 T C INTS12 Silent p.G275G 0.31 TCGA-F5-6814-01 4 106746854 106746854 T G GSTCD Nonsense_Mutation p.L476* 0.29 TCGA-F5-6814-01 4 107151548 107151548 G A TBCK Silent p.F582F 0.40 TCGA-F5-6814-01 4 107171589 107171589 A C TBCK Missense_Mutation p.F215C 0.36 deleterious(0.03) possibly_damaging(0.704) TCGA-F5-6814-01 4 107230092 107230092 A G TBCK Missense_Mutation p.M9T 0.44 deleterious(0) benign(0.01) TCGA-F5-6814-01 4 107845329 107845329 C A DKK2 Missense_Mutation p.D188Y 0.29 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 4 108866481 108866481 A G CYP2U1 Silent p.G282G 0.16 TCGA-F5-6814-01 4 108955417 108955417 G T HADH Missense_Mutation p.E300D 0.32 tolerated(1) benign(0) TCGA-F5-6814-01 4 108991819 108991819 A G LEF1 Silent p.Y372Y 0.25 TCGA-F5-6814-01 4 109734946 109734946 T C COL25A1 3'UTR 0.28 TCGA-F5-6814-01 4 110608697 110608697 T C CCDC109B Silent p.R320R 0.21 TCGA-F5-6814-01 4 110662070 110662070 A G CFI Silent p.F577F 0.11 TCGA-F5-6814-01 4 110670726 110670726 G A CFI Silent p.L325L 0.22 TCGA-F5-6814-01 4 110763760 110763760 T G RRH Missense_Mutation p.S286A 0.17 tolerated(0.09) probably_damaging(0.995) TCGA-F5-6814-01 4 110862234 110862234 G T EGF Missense_Mutation p.R87I 0.15 deleterious(0.02) benign(0.012) TCGA-F5-6814-01 4 110895864 110895864 C A EGF Missense_Mutation p.S577Y 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-F5-6814-01 4 110897203 110897203 G A EGF Missense_Mutation p.R622Q 0.45 tolerated(0.08) possibly_damaging(0.746) TCGA-F5-6814-01 4 110925673 110925673 G T EGF Silent p.L1062L 0.29 TCGA-F5-6814-01 4 110972602 110972602 C A ELOVL6 Missense_Mutation p.Q230H 0.42 tolerated(0.06) benign(0.016) TCGA-F5-6814-01 4 113199243 113199243 G A TIFA Silent p.D110D 0.37 TCGA-F5-6814-01 4 113199427 113199427 A C TIFA Missense_Mutation p.F49C 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 113353005 113353005 G T ALPK1 Nonsense_Mutation p.E768* 0.39 TCGA-F5-6814-01 4 113469475 113469475 A C C4orf21 Missense_Mutation p.F1803C 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 113539736 113539736 C A C4orf21 Nonsense_Mutation p.E488* 0.26 TCGA-F5-6814-01 4 113540617 113540617 G A C4orf21 Missense_Mutation p.S194L 0.32 tolerated(0.47) possibly_damaging(0.719) TCGA-F5-6814-01 4 113553100 113553100 G A C4orf21 Missense_Mutation p.H30Y 0.39 tolerated(1) benign(0.342) TCGA-F5-6814-01 4 113569544 113569544 A G LARP7 Intron 0.12 TCGA-F5-6814-01 4 114199662 114199662 A C ANK2 Missense_Mutation p.K610T 0.42 possibly_damaging(0.772) TCGA-F5-6814-01 4 114213610 114213610 T C ANK2 Silent p.G772G 0.11 TCGA-F5-6814-01 4 114274711 114274711 C T ANK2 Missense_Mutation p.T1646I 0.14 benign(0.053) TCGA-F5-6814-01 4 114275745 114275745 C T ANK2 Missense_Mutation p.R1991W 0.26 probably_damaging(0.999) TCGA-F5-6814-01 4 114277990 114277990 C A ANK2 Missense_Mutation p.S2739Y 0.32 benign(0.003) TCGA-F5-6814-01 4 114278656 114278656 C A ANK2 Missense_Mutation p.S2961Y 0.47 benign(0.015) TCGA-F5-6814-01 4 114278856 114278856 G T ANK2 Nonsense_Mutation p.E3028* 0.38 TCGA-F5-6814-01 4 114280205 114280205 C A ANK2 Missense_Mutation p.F3477L 0.31 probably_damaging(0.998) TCGA-F5-6814-01 4 114294311 114294311 A G ANK2 Silent p.G3892G 0.15 TCGA-F5-6814-01 4 114302674 114302674 C T ANK2 3'UTR 0.38 TCGA-F5-6814-01 4 115544111 115544111 C T UGT8 Silent p.I25I 0.22 TCGA-F5-6814-01 4 115997258 115997258 A G NDST4 Missense_Mutation p.F312S 0.34 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 4 118005347 118005347 G A TRAM1L1 3'UTR 0.46 TCGA-F5-6814-01 4 118005370 118005370 A T TRAM1L1 3'UTR 0.26 TCGA-F5-6814-01 4 118975876 118975876 C T NDST3 Missense_Mutation p.L271F 0.39 tolerated(0.17) benign(0.014) TCGA-F5-6814-01 4 119472231 119472231 T A CEP170P1 Intron 0.23 TCGA-F5-6814-01 4 119475294 119475294 G A CEP170P1 RNA 0.29 TCGA-F5-6814-01 4 119660425 119660425 C T SEC24D Silent p.T752T 0.31 TCGA-F5-6814-01 4 119944588 119944588 C T SYNPO2 Nonsense_Mutation p.R37* 0.35 TCGA-F5-6814-01 4 119948253 119948253 G A SYNPO2 Silent p.S243S 0.26 TCGA-F5-6814-01 4 119978764 119978764 A G SYNPO2 Missense_Mutation p.E1154G 0.31 deleterious(0.03) probably_damaging(0.957) TCGA-F5-6814-01 4 120213965 120213965 G A USP53 Missense_Mutation p.E941K 0.22 tolerated_low_confidence(0.21) benign(0.007) TCGA-F5-6814-01 4 120243314 120243314 G T FABP2 5'UTR 0.10 TCGA-F5-6814-01 4 121616207 121616207 A C PRDM5 3'UTR 0.33 TCGA-F5-6814-01 4 121732594 121732594 C A PRDM5 Missense_Mutation p.K292N 0.23 tolerated_low_confidence(0.06) benign(0.103) TCGA-F5-6814-01 4 122063904 122063904 T G TNIP3 Missense_Mutation p.K332Q 0.20 tolerated(0.16) probably_damaging(0.998) TCGA-F5-6814-01 4 122075782 122075782 T G TNIP3 Missense_Mutation p.K216T 0.17 deleterious(0.04) benign(0.022) TCGA-F5-6814-01 4 122607464 122607464 G A ANXA5 Missense_Mutation p.R25W 0.56 deleterious(0) probably_damaging(0.929) TCGA-F5-6814-01 4 122681394 122681394 G T TMEM155 3'UTR 0.19 TCGA-F5-6814-01 4 122722639 122722639 G T EXOSC9 Missense_Mutation p.E20D 0.46 tolerated(0.12) benign(0.021) TCGA-F5-6814-01 4 122722934 122722934 G T EXOSC9 Intron 0.25 TCGA-F5-6814-01 4 122737564 122737564 G T EXOSC9 Missense_Mutation p.M416I 0.22 tolerated_low_confidence(0.09) benign(0.001) TCGA-F5-6814-01 4 122743771 122743771 C A CCNA2 Missense_Mutation p.D82Y 0.45 deleterious(0) possibly_damaging(0.593) TCGA-F5-6814-01 4 122756386 122756386 C A BBS7 Missense_Mutation p.R475I 0.38 deleterious(0.01) possibly_damaging(0.772) TCGA-F5-6814-01 4 122800803 122800803 T G TRPC3 3'UTR 0.36 TCGA-F5-6814-01 4 122800994 122800994 C T TRPC3 Missense_Mutation p.R888H 0.40 deleterious(0.02) possibly_damaging(0.572) TCGA-F5-6814-01 4 122803512 122803512 C A TRPC3 Nonsense_Mutation p.E874* 0.23 TCGA-F5-6814-01 4 123168391 123168391 G T KIAA1109 Missense_Mutation p.K1797N 0.13 probably_damaging(0.997) TCGA-F5-6814-01 4 123175411 123175411 A G KIAA1109 Missense_Mutation p.D1995G 0.11 possibly_damaging(0.697) TCGA-F5-6814-01 4 123192401 123192401 T C KIAA1109 Silent p.L2574L 0.26 TCGA-F5-6814-01 4 123257502 123257502 T G KIAA1109 Missense_Mutation p.Y4002D 0.44 probably_damaging(0.916) TCGA-F5-6814-01 4 123277868 123277868 C A KIAA1109 Missense_Mutation p.L4865I 0.33 probably_damaging(0.999) TCGA-F5-6814-01 4 123663516 123663516 T G BBS12 Missense_Mutation p.L157V 0.38 tolerated(0.3) benign(0.006) TCGA-F5-6814-01 4 123665112 123665112 G A BBS12 Missense_Mutation p.E689K 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 123665604 123665604 T C BBS12 3'UTR 0.27 TCGA-F5-6814-01 4 123665872 123665872 T G BBS12 3'UTR 0.09 TCGA-F5-6814-01 4 123848860 123848860 A C SPATA5 Missense_Mutation p.N79H 0.23 tolerated(0.05) possibly_damaging(0.738) TCGA-F5-6814-01 4 123868541 123868541 C T SPATA5 Nonsense_Mutation p.R538* 0.51 TCGA-F5-6814-01 4 124177213 124177213 C T SPATA5 Missense_Mutation p.P795S 0.36 tolerated(0.16) probably_damaging(1) TCGA-F5-6814-01 4 124235272 124235272 C A SPATA5 3'UTR 0.31 TCGA-F5-6814-01 4 1245455 1245455 T G CTBP1 5'Flank 0.17 TCGA-F5-6814-01 4 1245629 1245629 T C CTBP1 5'Flank 0.53 TCGA-F5-6814-01 4 125592594 125592594 G T ANKRD50 Missense_Mutation p.T613K 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 125593591 125593591 G A ANKRD50 Nonsense_Mutation p.R281* 0.39 TCGA-F5-6814-01 4 125631168 125631168 C T ANKRD50 Missense_Mutation p.E167K 0.24 deleterious(0.02) probably_damaging(0.91) TCGA-F5-6814-01 4 126240910 126240910 C T FAT4 Missense_Mutation p.A1115V 0.29 benign(0.043) TCGA-F5-6814-01 4 126328167 126328167 G C FAT4 Missense_Mutation p.V1814L 0.41 probably_damaging(0.998) TCGA-F5-6814-01 4 126328204 126328204 G T FAT4 Missense_Mutation p.R1826I 0.38 probably_damaging(0.914) TCGA-F5-6814-01 4 126336666 126336666 A G FAT4 Missense_Mutation p.E2183G 0.09 possibly_damaging(0.887) TCGA-F5-6814-01 4 126370770 126370770 G T FAT4 Missense_Mutation p.D2867Y 0.52 probably_damaging(0.999) TCGA-F5-6814-01 4 126371186 126371186 T C FAT4 Silent p.V3005V 0.30 TCGA-F5-6814-01 4 126371891 126371891 C A FAT4 Silent p.L3240L 0.47 TCGA-F5-6814-01 4 126372259 126372259 G A FAT4 Missense_Mutation p.R3363Q 0.38 probably_damaging(0.999) TCGA-F5-6814-01 4 126372579 126372579 C T FAT4 Nonsense_Mutation p.R3470* 0.10 TCGA-F5-6814-01 4 126372717 126372717 G T FAT4 Nonsense_Mutation p.E3516* 0.13 TCGA-F5-6814-01 4 126372780 126372780 C T FAT4 Missense_Mutation p.L3537F 0.32 probably_damaging(1) TCGA-F5-6814-01 4 126412697 126412697 C T FAT4 Missense_Mutation p.A4907V 0.19 benign(0.039) TCGA-F5-6814-01 4 128584604 128584604 A G INTU Silent p.T279T 0.20 TCGA-F5-6814-01 4 128627874 128627874 C T INTU Missense_Mutation p.S674L 0.43 deleterious(0.03) benign(0.329) TCGA-F5-6814-01 4 128637601 128637601 C A INTU 3'UTR 0.17 TCGA-F5-6814-01 4 128703725 128703725 A G HSPA4L Missense_Mutation p.D7G 0.13 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 4 128811190 128811190 G T PLK4 Missense_Mutation p.M543I 0.18 tolerated(0.19) benign(0) TCGA-F5-6814-01 4 128951855 128951855 C T C4orf29 3'UTR 0.19 TCGA-F5-6814-01 4 129043090 129043090 G A LARP1B Missense_Mutation p.R424Q 0.31 deleterious(0.04) benign(0.06) TCGA-F5-6814-01 4 129043135 129043135 A C LARP1B Missense_Mutation p.E439A 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 129752927 129752927 G A JADE1 Missense_Mutation p.R5H 0.32 deleterious(0) probably_damaging(0.912) TCGA-F5-6814-01 4 129773331 129773331 G T JADE1 Nonsense_Mutation p.E202* 0.27 TCGA-F5-6814-01 4 130003501 130003501 C T SCLT1 Missense_Mutation p.R21Q 0.15 tolerated(0.98) benign(0.001) TCGA-F5-6814-01 4 134071524 134071524 G A PCDH10 Missense_Mutation p.E77K 0.29 tolerated(0.05) possibly_damaging(0.823) TCGA-F5-6814-01 4 135122309 135122309 A T PABPC4L Missense_Mutation p.S14T 0.29 deleterious_low_confidence(0) benign(0.008) TCGA-F5-6814-01 4 13602067 13602067 C T BOD1L1 Missense_Mutation p.E2153K 0.14 possibly_damaging(0.813) TCGA-F5-6814-01 4 13604203 13604203 C A BOD1L1 Missense_Mutation p.D1441Y 0.12 possibly_damaging(0.73) TCGA-F5-6814-01 4 13606193 13606193 T C BOD1L1 Silent p.Q777Q 0.26 TCGA-F5-6814-01 4 1389765 1389765 G T CRIPAK 3'UTR 0.21 TCGA-F5-6814-01 4 139163169 139163169 T G SLC7A11 Missense_Mutation p.N19H 0.14 deleterious(0.04) benign(0.002) TCGA-F5-6814-01 4 139981806 139981806 G T ELF2 Missense_Mutation p.L265I 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 139983127 139983127 C A ELF2 Missense_Mutation p.R221I 0.27 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 140187898 140187898 T G MGARP Missense_Mutation p.D193A 0.33 tolerated(0.07) benign(0.232) TCGA-F5-6814-01 4 140196470 140196470 G A MGARP Silent p.G53G 0.26 TCGA-F5-6814-01 4 140810962 140810962 T C MAML3 Missense_Mutation p.Y543C 0.29 probably_damaging(0.999) TCGA-F5-6814-01 4 141302322 141302322 G A SCOC 3'UTR 0.40 TCGA-F5-6814-01 4 141315116 141315116 G A CLGN Missense_Mutation p.A410V 0.42 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 141456901 141456901 G A ELMOD2 Silent p.A62A 0.29 TCGA-F5-6814-01 4 141471530 141471530 A G ELMOD2 3'UTR 0.14 TCGA-F5-6814-01 4 141847220 141847220 A G RNF150 Missense_Mutation p.F300L 0.35 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 4 144107280 144107280 C - USP38 Frame_Shift_Del p.T227Qfs*9 0.31 TCGA-F5-6814-01 4 144378848 144378848 T G GAB1 Missense_Mutation p.I534S 0.27 tolerated(0.16) possibly_damaging(0.457) TCGA-F5-6814-01 4 144442728 144442728 G T SMARCA5 Missense_Mutation p.Q133H 0.41 tolerated(0.07) benign(0.011) TCGA-F5-6814-01 4 144471185 144471185 G T SMARCA5 Missense_Mutation p.L1007F 0.15 deleterious(0.01) probably_damaging(0.98) TCGA-F5-6814-01 4 144797984 144797984 G A GYPE Missense_Mutation p.A54V 0.32 tolerated_low_confidence(0.18) possibly_damaging(0.695) TCGA-F5-6814-01 4 144826681 144826681 C T GYPE 5'UTR 0.21 TCGA-F5-6814-01 4 145038017 145038017 C T GYPA Missense_Mutation p.R116Q 0.38 tolerated(0.2) possibly_damaging(0.87) TCGA-F5-6814-01 4 145916510 145916510 C - ANAPC10 3'UTR 0.26 TCGA-F5-6814-01 4 146017252 146017252 T G ANAPC10 5'UTR 0.43 TCGA-F5-6814-01 4 146064598 146064598 C A OTUD4 Splice_Site p.X470_splice 0.23 TCGA-F5-6814-01 4 146560724 146560724 C T MMAA Nonsense_Mutation p.R145* 0.30 TCGA-F5-6814-01 4 146648063 146648063 G A C4orf51 Missense_Mutation p.G103E 0.46 deleterious(0.03) benign(0.005) TCGA-F5-6814-01 4 147628278 147628278 C A TTC29 3'UTR 0.12 TCGA-F5-6814-01 4 148407179 148407179 A G EDNRA Missense_Mutation p.N116D 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 148552551 148552551 T C TMEM184C Missense_Mutation p.M225T 0.31 deleterious(0.04) possibly_damaging(0.694) TCGA-F5-6814-01 4 148653564 148653564 G T ARHGAP10 Nonsense_Mutation p.E38* 0.17 TCGA-F5-6814-01 4 148744100 148744100 G A ARHGAP10 Missense_Mutation p.E102K 0.42 tolerated(0.49) benign(0.197) TCGA-F5-6814-01 4 148796182 148796182 G T ARHGAP10 Missense_Mutation p.R238L 0.30 deleterious(0.02) probably_damaging(0.995) TCGA-F5-6814-01 4 148886215 148886215 C A ARHGAP10 Missense_Mutation p.F497L 0.36 tolerated(0.37) benign(0.109) TCGA-F5-6814-01 4 149356622 149356622 T C NR3C2 Missense_Mutation p.K464R 0.19 tolerated_low_confidence(0.1) possibly_damaging(0.636) TCGA-F5-6814-01 4 149357647 149357647 C A NR3C2 Missense_Mutation p.Q122H 0.23 tolerated_low_confidence(0.26) benign(0.001) TCGA-F5-6814-01 4 151505833 151505833 C A MAB21L2 3'UTR 0.27 TCGA-F5-6814-01 4 151656465 151656465 T C LRBA Missense_Mutation p.E1900G 0.10 deleterious(0) possibly_damaging(0.639) TCGA-F5-6814-01 4 151829982 151829982 C T LRBA Missense_Mutation p.D397N 0.26 deleterious(0.05) probably_damaging(0.996) TCGA-F5-6814-01 4 152020854 152020854 C A RPS3A Missense_Mutation p.A17D 0.42 tolerated(0.07) possibly_damaging(0.598) TCGA-F5-6814-01 4 152080419 152080419 G A SH3D19 Silent p.L296L 0.42 TCGA-F5-6814-01 4 152203390 152203390 C A PRSS48 Silent p.I102I 0.31 TCGA-F5-6814-01 4 153249384 153249384 C T FBXW7 Missense_Mutation p.R465H 0.39 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 4 153573836 153573836 C A TMEM154 Missense_Mutation p.R103I 0.18 deleterious(0) benign(0.148) TCGA-F5-6814-01 4 153803877 153803877 A T ARFIP1 Missense_Mutation p.E212D 0.33 tolerated(0.31) benign(0.002) TCGA-F5-6814-01 4 153875453 153875453 T G FHDC1 Missense_Mutation p.F215L 0.33 tolerated(1) benign(0.001) TCGA-F5-6814-01 4 153883965 153883965 G T FHDC1 Splice_Site p.X284_splice 0.24 TCGA-F5-6814-01 4 154335924 154335924 C A MND1 Missense_Mutation p.S178Y 0.30 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 4 15444216 15444216 C T C1QTNF7 Silent p.F228F 0.22 TCGA-F5-6814-01 4 154624695 154624695 A G TLR2 Silent p.L212L 0.15 TCGA-F5-6814-01 4 154625370 154625370 G T TLR2 Missense_Mutation p.K437N 0.31 tolerated(0.64) probably_damaging(0.986) TCGA-F5-6814-01 4 154626302 154626302 G A TLR2 Missense_Mutation p.R748H 0.33 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 4 154626645 154626645 T A TLR2 3'UTR 0.25 TCGA-F5-6814-01 4 155155689 155155689 C T DCHS2 Silent p.%3D 0.23 TCGA-F5-6814-01 4 155156737 155156737 C A DCHS2 Missense_Mutation p.D2568Y 0.21 deleterious(0.04) benign(0.08) TCGA-F5-6814-01 4 155160341 155160341 G T DCHS2 Missense_Mutation p.F2036L 0.47 deleterious(0.01) possibly_damaging(0.712) TCGA-F5-6814-01 4 155241663 155241663 C T DCHS2 Missense_Mutation p.E1175K 0.41 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 155241738 155241738 T C DCHS2 Missense_Mutation p.T1150A 0.10 tolerated(0.61) benign(0.026) TCGA-F5-6814-01 4 155242237 155242237 C T DCHS2 Silent p.K983K 0.32 TCGA-F5-6814-01 4 15534861 15534861 A C CC2D2A Silent p.T504T 0.22 TCGA-F5-6814-01 4 155411849 155411849 A C DCHS2 Missense_Mutation p.F220C 0.19 deleterious(0.04) possibly_damaging(0.706) TCGA-F5-6814-01 4 155488840 155488840 C T FGB Missense_Mutation p.R196C 0.32 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 4 155507020 155507020 C T FGA Missense_Mutation p.D521N 0.42 tolerated(0.14) benign(0.002) TCGA-F5-6814-01 4 155510004 155510004 G T FGA Missense_Mutation p.S102Y 0.36 deleterious(0) possibly_damaging(0.798) TCGA-F5-6814-01 4 15552449 15552449 C A CC2D2A Silent p.V728V 0.13 TCGA-F5-6814-01 4 155525463 155525463 A C FGG 3'Flank 0.08 TCGA-F5-6814-01 4 155531268 155531268 G A FGG Silent p.C161C 0.39 TCGA-F5-6814-01 4 155720248 155720248 G A RBM46 Missense_Mutation p.E312K 0.23 tolerated(0.16) benign(0.017) TCGA-F5-6814-01 4 15575831 15575831 G A CC2D2A Missense_Mutation p.R1218Q 0.18 tolerated(0.1) benign(0.005) TCGA-F5-6814-01 4 156013 156013 T G ZNF718 RNA 0.29 TCGA-F5-6814-01 4 156137111 156137111 A C NPY2R 3'UTR 0.46 TCGA-F5-6814-01 4 156138212 156138212 A C NPY2R 3'UTR 0.21 TCGA-F5-6814-01 4 156276927 156276927 A G MAP9 Missense_Mutation p.S411P 0.10 tolerated(0.29) benign(0.023) TCGA-F5-6814-01 4 156294512 156294512 G T MAP9 Missense_Mutation p.P86H 0.19 tolerated(0.05) possibly_damaging(0.537) TCGA-F5-6814-01 4 156618040 156618040 G T GUCY1A3 Missense_Mutation p.K7N 0.26 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-F5-6814-01 4 156629388 156629388 G A GUCY1A3 Silent p.R106R 0.31 TCGA-F5-6814-01 4 156632278 156632278 G T GUCY1A3 Nonsense_Mutation p.E321* 0.27 TCGA-F5-6814-01 4 156643276 156643276 C A GUCY1A3 Silent p.V601V 0.21 TCGA-F5-6814-01 4 156751142 156751142 C A ASIC5 Nonsense_Mutation p.E462* 0.37 TCGA-F5-6814-01 4 156832662 156832662 G T TDO2 Missense_Mutation p.R211I 0.28 deleterious(0) probably_damaging(0.966) TCGA-F5-6814-01 4 15688877 15688877 C A FAM200B Missense_Mutation p.L93I 0.17 deleterious(0.01) possibly_damaging(0.808) TCGA-F5-6814-01 4 15689252 15689252 C T FAM200B Missense_Mutation p.R218C 0.21 deleterious(0) possibly_damaging(0.736) TCGA-F5-6814-01 4 15689990 15689990 C T FAM200B Nonsense_Mutation p.R464* 0.50 TCGA-F5-6814-01 4 15691469 15691469 C A FAM200B 3'Flank 0.12 TCGA-F5-6814-01 4 157693843 157693843 G T PDGFC Missense_Mutation p.S233Y 0.30 tolerated(0.09) benign(0.429) TCGA-F5-6814-01 4 15780001 15780001 G A CD38 5'UTR 0.45 TCGA-F5-6814-01 4 157999176 157999176 G T GLRB 5'UTR 0.36 TCGA-F5-6814-01 4 158233903 158233903 G A GRIA2 Missense_Mutation p.G181E 0.45 tolerated(1) benign(0.013) TCGA-F5-6814-01 4 158238815 158238815 T C GRIA2 Silent p.I224I 0.08 TCGA-F5-6814-01 4 158262429 158262429 C T GRIA2 Missense_Mutation p.R620C 0.31 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 4 158262608 158262608 T G GRIA2 Missense_Mutation p.F679L 0.16 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 4 158281222 158281222 G A GRIA2 Missense_Mutation p.D740N 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-F5-6814-01 4 158284014 158284014 C A GRIA2 Missense_Mutation p.L824I 0.08 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 159559166 159559166 T A RXFP1 Silent p.L326L 0.26 TCGA-F5-6814-01 4 159559228 159559228 C A RXFP1 Missense_Mutation p.S347Y 0.42 deleterious(0) possibly_damaging(0.88) TCGA-F5-6814-01 4 159573067 159573067 A G RXFP1 Missense_Mutation p.T712A 0.44 tolerated(0.39) benign(0) TCGA-F5-6814-01 4 159631931 159631931 C A PPID Nonsense_Mutation p.E322* 0.24 TCGA-F5-6814-01 4 159816998 159816998 G T FNIP2 Nonsense_Mutation p.E1083* 0.29 TCGA-F5-6814-01 4 160252958 160252958 T C RAPGEF2 Silent p.T423T 0.29 TCGA-F5-6814-01 4 16026840 16026840 C T PROM1 Missense_Mutation p.R202Q 0.15 tolerated(0.26) benign(0.317) TCGA-F5-6814-01 4 160271315 160271315 A C RAPGEF2 Missense_Mutation p.K1086Q 0.42 deleterious(0.02) probably_damaging(0.989) TCGA-F5-6814-01 4 16037370 16037370 G T PROM1 Silent p.I97I 0.29 TCGA-F5-6814-01 4 162421190 162421190 C A FSTL5 Missense_Mutation p.S479I 0.14 tolerated(0.05) probably_damaging(0.974) TCGA-F5-6814-01 4 162697108 162697108 C A FSTL5 Missense_Mutation p.K176N 0.46 deleterious(0) benign(0.036) TCGA-F5-6814-01 4 162697123 162697123 G A FSTL5 Silent p.D171D 0.27 TCGA-F5-6814-01 4 162841730 162841730 T G FSTL5 Missense_Mutation p.S79R 0.13 tolerated(0.07) benign(0.03) TCGA-F5-6814-01 4 164085385 164085385 T C NAF1 Missense_Mutation p.D175G 0.26 tolerated(0.35) benign(0.262) TCGA-F5-6814-01 4 164247748 164247748 A G NPY1R 5'UTR 0.28 TCGA-F5-6814-01 4 164272485 164272485 C T NPY5R Missense_Mutation p.R354C 0.33 deleterious(0.04) benign(0.025) TCGA-F5-6814-01 4 164272819 164272819 T G NPY5R 3'UTR 0.39 TCGA-F5-6814-01 4 164393597 164393597 G T TKTL2 Silent p.V430V 0.37 TCGA-F5-6814-01 4 165879715 165879715 T G FAM218A 3'UTR 0.17 TCGA-F5-6814-01 4 165961648 165961648 G T TRIM60 Nonsense_Mutation p.E142* 0.61 TCGA-F5-6814-01 4 165962834 165962834 C A TRIM60 3'UTR 0.22 TCGA-F5-6814-01 4 166254733 166254733 T G MSMO1 Missense_Mutation p.L71V 0.16 tolerated(0.15) benign(0.025) TCGA-F5-6814-01 4 166403472 166403472 G T CPE Missense_Mutation p.D251Y 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 166924562 166924562 C T TLL1 Missense_Mutation p.R218W 0.45 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 4 166929130 166929130 G A TLL1 Missense_Mutation p.E283K 0.11 deleterious(0.03) benign(0.392) TCGA-F5-6814-01 4 166986903 166986903 C A TLL1 Missense_Mutation p.F692L 0.41 deleterious(0.04) benign(0.292) TCGA-F5-6814-01 4 167655997 167655997 G A SPOCK3 3'UTR 0.22 TCGA-F5-6814-01 4 169049314 169049314 T G ANXA10 Missense_Mutation p.F33C 0.47 deleterious(0.01) possibly_damaging(0.855) TCGA-F5-6814-01 4 169138019 169138019 A C DDX60 3'UTR 0.16 TCGA-F5-6814-01 4 169294862 169294862 C T DDX60L Silent p.S1577S 0.31 TCGA-F5-6814-01 4 169296607 169296607 C A DDX60L Missense_Mutation p.K1518N 0.12 tolerated(0.36) benign(0.009) TCGA-F5-6814-01 4 169299518 169299518 A C DDX60L Missense_Mutation p.F1491C 0.30 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 4 169344911 169344911 C A DDX60L Missense_Mutation p.D649Y 0.15 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 4 170051240 170051240 G A SH3RF1 Missense_Mutation p.S379L 0.40 tolerated(0.33) benign(0.011) TCGA-F5-6814-01 4 170428250 170428250 C A NEK1 Nonsense_Mutation p.E649* 0.32 TCGA-F5-6814-01 4 170613454 170613454 G A CLCN3 Missense_Mutation p.E307K 0.19 deleterious(0.01) benign(0.36) TCGA-F5-6814-01 4 170663214 170663214 T C C4orf27 Missense_Mutation p.K181R 0.23 tolerated(0.09) benign(0.208) TCGA-F5-6814-01 4 170671721 170671721 C A C4orf27 Missense_Mutation p.D122Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 4 170674922 170674922 C T C4orf27 Missense_Mutation p.R38Q 0.33 tolerated(0.11) benign(0.016) TCGA-F5-6814-01 4 170674923 170674923 G A C4orf27 Nonsense_Mutation p.R38* 0.38 TCGA-F5-6814-01 4 1718992 1718992 C T TMEM129 Missense_Mutation p.R335H 0.46 tolerated(0.51) benign(0.01) TCGA-F5-6814-01 4 1730325 1730325 C A TACC3 Missense_Mutation p.S399Y 0.43 deleterious(0.01) benign(0.344) TCGA-F5-6814-01 4 173730571 173730571 C T GALNTL6 Missense_Mutation p.R205C 0.20 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 4 174235223 174235223 C T GALNT7 Nonsense_Mutation p.R502* 0.36 TCGA-F5-6814-01 4 174253234 174253234 T A HMGB2 Missense_Mutation p.E209D 0.13 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 4 17492298 17492298 C T QDPR Missense_Mutation p.E206K 0.14 tolerated(0.06) benign(0.086) TCGA-F5-6814-01 4 17493854 17493854 C T QDPR Splice_Site p.X182_splice 0.31 TCGA-F5-6814-01 4 175252654 175252654 A T CEP44 Missense_Mutation p.T370S 0.09 tolerated_low_confidence(0.13) benign(0) TCGA-F5-6814-01 4 175412943 175412943 T G HPGD 3'UTR 0.25 TCGA-F5-6814-01 4 175564994 175564994 G T GLRA3 Missense_Mutation p.F446L 0.41 tolerated(0.25) benign(0.168) TCGA-F5-6814-01 4 175577930 175577930 A C GLRA3 Silent p.A360A 0.35 TCGA-F5-6814-01 4 175580346 175580346 A C GLRA3 Silent p.V310V 0.38 TCGA-F5-6814-01 4 175897197 175897197 G A ADAM29 Missense_Mutation p.R174Q 0.40 tolerated(1) benign(0) TCGA-F5-6814-01 4 175897220 175897220 A T ADAM29 Missense_Mutation p.N182Y 0.32 deleterious(0) possibly_damaging(0.691) TCGA-F5-6814-01 4 17621584 17621584 C T MED28 Nonsense_Mutation p.R74* 0.41 TCGA-F5-6814-01 4 17649296 17649296 A G FAM184B Silent p.C770C 0.27 TCGA-F5-6814-01 4 177049892 177049892 C A WDR17 Missense_Mutation p.S289Y 0.26 tolerated(0.18) benign(0.009) TCGA-F5-6814-01 4 177049972 177049972 C T WDR17 Missense_Mutation p.H316Y 0.29 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 4 177071048 177071048 C A WDR17 Missense_Mutation p.T687N 0.34 tolerated(0.22) possibly_damaging(0.557) TCGA-F5-6814-01 4 177093547 177093547 G T WDR17 Nonsense_Mutation p.E1081* 0.10 TCGA-F5-6814-01 4 177098673 177098673 T G WDR17 Missense_Mutation p.I1239M 0.24 deleterious(0.05) benign(0.299) TCGA-F5-6814-01 4 177109387 177109387 C A SPATA4 Splice_Site p.X230_splice 0.30 TCGA-F5-6814-01 4 177114180 177114180 T C SPATA4 Silent p.G132G 0.15 TCGA-F5-6814-01 4 177114214 177114214 T G SPATA4 Missense_Mutation p.K121T 0.26 deleterious(0.01) probably_damaging(0.926) TCGA-F5-6814-01 4 177136710 177136710 G T ASB5 3'UTR 0.33 TCGA-F5-6814-01 4 177138080 177138080 A C ASB5 Missense_Mutation p.L251V 0.22 tolerated(0.14) benign(0.088) TCGA-F5-6814-01 4 178283614 178283614 C T NEIL3 Missense_Mutation p.P603S 0.32 deleterious(0.01) possibly_damaging(0.458) TCGA-F5-6814-01 4 178361458 178361458 C A AGA Nonsense_Mutation p.E84* 0.27 TCGA-F5-6814-01 4 17847356 17847356 G A NCAPG 3'Flank 0.17 TCGA-F5-6814-01 4 17963535 17963535 G A LCORL Nonsense_Mutation p.R141* 0.53 TCGA-F5-6814-01 4 183717918 183717918 C T TENM3 Missense_Mutation p.P2448S 0.38 tolerated(0.37) benign(0.041) TCGA-F5-6814-01 4 184175036 184175036 C T WWC2 Silent p.F360F 0.37 TCGA-F5-6814-01 4 184186136 184186137 - A WWC2 Frame_Shift_Ins p.S641Ifs*24 0.34 TCGA-F5-6814-01 4 184190283 184190283 C A WWC2 Nonsense_Mutation p.C789* 0.45 TCGA-F5-6814-01 4 184241474 184241474 C A CLDN22 5'UTR 0.08 TCGA-F5-6814-01 4 184367460 184367460 G A CDKN2AIP Missense_Mutation p.R208Q 0.33 tolerated(0.26) unknown(0) TCGA-F5-6814-01 4 184932482 184932482 G A STOX2 Missense_Mutation p.D831N 0.32 deleterious_low_confidence(0) benign(0.157) TCGA-F5-6814-01 4 185033952 185033952 T G ENPP6 Missense_Mutation p.K289T 0.46 tolerated(0.21) benign(0.021) TCGA-F5-6814-01 4 185339344 185339344 C A IRF2 Nonsense_Mutation p.E130* 0.16 TCGA-F5-6814-01 4 185652107 185652107 C A CENPU Missense_Mutation p.K21N 0.08 deleterious(0) possibly_damaging(0.894) TCGA-F5-6814-01 4 186111665 186111665 G A KIAA1430 Missense_Mutation p.S229L 0.43 tolerated(0.34) benign(0.027) TCGA-F5-6814-01 4 186112193 186112193 G A KIAA1430 Missense_Mutation p.S53L 0.10 tolerated(0.61) benign(0) TCGA-F5-6814-01 4 186272748 186272748 C A SNX25 Missense_Mutation p.F653L 0.58 tolerated(0.32) benign(0.005) TCGA-F5-6814-01 4 186283085 186283085 C T SNX25 Missense_Mutation p.R723W 0.60 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 4 186283183 186283183 G A SNX25 Silent p.P755P 0.54 TCGA-F5-6814-01 4 186353258 186353258 T C C4orf47 Missense_Mutation p.Y75H 0.40 deleterious(0.05) benign(0.432) TCGA-F5-6814-01 4 186379869 186379869 T G CCDC110 Missense_Mutation p.K624N 0.21 deleterious(0.04) possibly_damaging(0.839) TCGA-F5-6814-01 4 186380663 186380663 C A CCDC110 Nonsense_Mutation p.E360* 0.13 TCGA-F5-6814-01 4 186998142 186998142 G A TLR3 Silent p.T123T 0.19 TCGA-F5-6814-01 4 187000156 187000156 T G TLR3 Missense_Mutation p.L202V 0.12 deleterious(0) possibly_damaging(0.904) TCGA-F5-6814-01 4 187004221 187004221 A C TLR3 Missense_Mutation p.I461L 0.13 tolerated(0.25) benign(0.034) TCGA-F5-6814-01 4 187005275 187005275 A C TLR3 Missense_Mutation p.K812T 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 187073066 187073066 G A FAM149A 5'UTR 0.61 TCGA-F5-6814-01 4 187197422 187197422 A C F11 Silent p.A211A 0.47 TCGA-F5-6814-01 4 187205378 187205378 A G F11 Missense_Mutation p.N423S 0.35 tolerated(0.2) benign(0.035) TCGA-F5-6814-01 4 187521385 187521385 G A FAT1 Missense_Mutation p.R3924C 0.43 possibly_damaging(0.883) TCGA-F5-6814-01 4 187524910 187524910 G T FAT1 Missense_Mutation p.F3590L 0.43 probably_damaging(0.998) TCGA-F5-6814-01 4 187539136 187539136 C A FAT1 Missense_Mutation p.W2868C 0.30 probably_damaging(1) TCGA-F5-6814-01 4 187542729 187542729 C A FAT1 Nonsense_Mutation p.E1671* 0.38 TCGA-F5-6814-01 4 187557944 187557944 T C FAT1 Missense_Mutation p.E1256G 0.26 probably_damaging(0.974) TCGA-F5-6814-01 4 187630528 187630528 T C FAT1 Missense_Mutation p.T152A 0.15 probably_damaging(0.998) TCGA-F5-6814-01 4 189064937 189064937 C T TRIML1 Intron 0.08 TCGA-F5-6814-01 4 1944251 1944251 C A WHSC1 Intron 0.23 TCGA-F5-6814-01 4 1944264 1944264 G T WHSC1 Intron 0.35 TCGA-F5-6814-01 4 20259517 20259517 C T SLIT2 Missense_Mutation p.T93I 0.30 tolerated(0.13) possibly_damaging(0.832) TCGA-F5-6814-01 4 20550684 20550684 C T SLIT2 Missense_Mutation p.L808F 0.26 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 20550744 20550744 C T SLIT2 Nonsense_Mutation p.R828* 0.28 TCGA-F5-6814-01 4 2209930 2209930 C A POLN Missense_Mutation p.E166D 0.31 tolerated(0.07) possibly_damaging(0.678) TCGA-F5-6814-01 4 22414962 22414962 C T GPR125 Missense_Mutation p.R692Q 0.32 deleterious(0.02) probably_damaging(0.93) TCGA-F5-6814-01 4 2252897 2252897 C T MXD4 Missense_Mutation p.R129H 0.10 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 4 2259736 2259736 G T MXD4 Missense_Mutation p.S56Y 0.40 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 4 22749368 22749368 G A GBA3 Missense_Mutation p.A246T 0.46 tolerated(0.24) benign(0.184) TCGA-F5-6814-01 4 2274994 2274994 C T ZFYVE28 Silent p.T743T 0.61 TCGA-F5-6814-01 4 2307056 2307056 G A ZFYVE28 Silent p.Y337Y 0.42 TCGA-F5-6814-01 4 24531362 24531362 A G DHX15 Missense_Mutation p.L711S 0.30 tolerated(0.14) possibly_damaging(0.606) TCGA-F5-6814-01 4 24542461 24542461 A G DHX15 Splice_Site p.X532_splice 0.11 TCGA-F5-6814-01 4 24802396 24802396 A G SOD3 3'UTR 0.54 TCGA-F5-6814-01 4 248528 248528 C T ZNF876P RNA 0.36 TCGA-F5-6814-01 4 25005147 25005147 C A LGI2 Missense_Mutation p.D522Y 0.14 deleterious(0.03) probably_damaging(0.99) TCGA-F5-6814-01 4 25019650 25019650 T G LGI2 Missense_Mutation p.N206H 0.27 tolerated(0.34) possibly_damaging(0.907) TCGA-F5-6814-01 4 25019763 25019763 T G LGI2 Missense_Mutation p.K168T 0.23 tolerated(0.53) benign(0.124) TCGA-F5-6814-01 4 2513795 2513795 A G RNF4 Intron 0.16 TCGA-F5-6814-01 4 2515399 2515399 C T RNF4 Silent p.I142I 0.17 TCGA-F5-6814-01 4 25161977 25161977 G A SEPSECS Silent p.S5S 0.27 TCGA-F5-6814-01 4 25384897 25384897 C T ANAPC4 Missense_Mutation p.L84F 0.16 tolerated(0.2) benign(0.393) TCGA-F5-6814-01 4 25398383 25398383 G A ANAPC4 Missense_Mutation p.E387K 0.24 deleterious(0.05) possibly_damaging(0.642) TCGA-F5-6814-01 4 25408463 25408463 G T ANAPC4 Missense_Mutation p.D444Y 0.22 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 4 25419886 25419886 A C ANAPC4 Missense_Mutation p.K770T 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.727) TCGA-F5-6814-01 4 25678050 25678050 G A SLC34A2 Silent p.P584P 0.11 TCGA-F5-6814-01 4 25769407 25769407 A C SEL1L3 Missense_Mutation p.I905M 0.10 tolerated(0.09) probably_damaging(0.99) TCGA-F5-6814-01 4 26432511 26432511 G A RBPJ Missense_Mutation p.R462Q 0.20 tolerated_low_confidence(0.09) benign(0.011) TCGA-F5-6814-01 4 265669 265669 C A ZNF732 Missense_Mutation p.R326I 0.54 tolerated(0.58) possibly_damaging(0.905) TCGA-F5-6814-01 4 2659595 2659595 C A FAM193A Missense_Mutation p.F168L 0.15 tolerated(0.31) benign(0.001) TCGA-F5-6814-01 4 2877630 2877630 G T ADD1 5'UTR 0.51 TCGA-F5-6814-01 4 289914 289914 C A ZNF732 Nonsense_Mutation p.E12* 0.19 TCGA-F5-6814-01 4 2932699 2932699 G A MFSD10 Intron 0.34 TCGA-F5-6814-01 4 2932996 2932996 C T MFSD10 Missense_Mutation p.A374T 0.49 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 2940639 2940639 C T NOP14 Silent p.R831R 0.08 TCGA-F5-6814-01 4 2945842 2945842 G T NOP14 Missense_Mutation p.L617I 0.33 tolerated(0.27) possibly_damaging(0.642) TCGA-F5-6814-01 4 3214418 3214418 C T HTT Silent p.F2252F 0.24 TCGA-F5-6814-01 4 3240676 3240676 C T HTT Silent p.S3062S 0.28 TCGA-F5-6814-01 4 36126563 36126563 T C ARAP2 Missense_Mutation p.K1223E 0.08 tolerated(0.86) benign(0.013) TCGA-F5-6814-01 4 36212216 36212216 T G ARAP2 Missense_Mutation p.K428T 0.39 tolerated(0.18) benign(0.171) TCGA-F5-6814-01 4 36230316 36230316 G T ARAP2 Missense_Mutation p.L265I 0.42 tolerated(0.22) benign(0.031) TCGA-F5-6814-01 4 37447791 37447791 G A KIAA1239 Missense_Mutation p.R1394Q 0.33 deleterious(0.01) probably_damaging(0.98) TCGA-F5-6814-01 4 37448204 37448204 A C KIAA1239 Missense_Mutation p.I1532L 0.21 tolerated(0.51) benign(0.001) TCGA-F5-6814-01 4 37448364 37448364 G A KIAA1239 Missense_Mutation p.R1585Q 0.38 tolerated(0.38) benign(0) TCGA-F5-6814-01 4 37633087 37633087 A G RELL1 Missense_Mutation p.S247P 0.13 tolerated(0.07) possibly_damaging(0.748) TCGA-F5-6814-01 4 37636715 37636715 C T RELL1 Silent p.P158P 0.53 TCGA-F5-6814-01 4 38775028 38775028 G T TLR10 Silent p.I728I 0.41 TCGA-F5-6814-01 4 38829580 38829580 A C TLR6 Missense_Mutation p.N505K 0.46 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 4 38830015 38830015 A G TLR6 Silent p.F360F 0.14 TCGA-F5-6814-01 4 38830334 38830334 A C TLR6 Missense_Mutation p.F254C 0.23 deleterious(0) possibly_damaging(0.682) TCGA-F5-6814-01 4 38924423 38924423 G T FAM114A1 Missense_Mutation p.E326D 0.26 tolerated(0.1) possibly_damaging(0.858) TCGA-F5-6814-01 4 38990512 38990512 C T TMEM156 Missense_Mutation p.R233H 0.35 tolerated(1) benign(0) TCGA-F5-6814-01 4 39188208 39188208 G T WDR19 Nonsense_Mutation p.E50* 0.35 TCGA-F5-6814-01 4 39206800 39206800 T A WDR19 Silent p.T210T 0.48 TCGA-F5-6814-01 4 39290387 39290387 C A RFC1 Missense_Mutation p.K1147N 0.32 deleterious_low_confidence(0.03) benign(0.03) TCGA-F5-6814-01 4 39297332 39297332 C A RFC1 Missense_Mutation p.M953I 0.12 tolerated(0.25) benign(0.038) TCGA-F5-6814-01 4 39322089 39322089 C T RFC1 Missense_Mutation p.A337T 0.38 tolerated(0.38) benign(0.002) TCGA-F5-6814-01 4 39329181 39329181 C T RFC1 Missense_Mutation p.R176K 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 4 39449034 39449034 T C KLB Silent p.A896A 0.18 TCGA-F5-6814-01 4 39846372 39846372 G A PDS5A Missense_Mutation p.T1151M 0.39 deleterious(0.05) possibly_damaging(0.678) TCGA-F5-6814-01 4 40104077 40104077 G T N4BP2 Missense_Mutation p.E204D 0.36 deleterious(0.04) benign(0.37) TCGA-F5-6814-01 4 40104119 40104119 T C N4BP2 Silent p.H218H 0.17 TCGA-F5-6814-01 4 40104789 40104789 C A N4BP2 Missense_Mutation p.L442I 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 40121716 40121716 G T N4BP2 Missense_Mutation p.R662I 0.17 deleterious(0.02) benign(0.413) TCGA-F5-6814-01 4 40121732 40121732 T G N4BP2 Missense_Mutation p.D667E 0.17 tolerated(1) benign(0.002) TCGA-F5-6814-01 4 40123246 40123246 C A N4BP2 Missense_Mutation p.S1172Y 0.27 tolerated(0.54) benign(0.307) TCGA-F5-6814-01 4 40246225 40246225 A C RHOH 3'UTR 0.46 TCGA-F5-6814-01 4 40356228 40356228 C A CHRNA9 Silent p.L377L 0.69 TCGA-F5-6814-01 4 40809137 40809137 A C NSUN7 Missense_Mutation p.K487T 0.39 tolerated(0.51) benign(0.175) TCGA-F5-6814-01 4 40936680 40936680 A G APBB2 Silent p.L382L 0.27 TCGA-F5-6814-01 4 41648264 41648264 G T LIMCH1 Missense_Mutation p.S408I 0.07 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 4 41984086 41984086 G A DCAF4L1 Missense_Mutation p.E93K 0.09 tolerated(1) benign(0.008) TCGA-F5-6814-01 4 41986348 41986348 A C DCAF4L1 3'UTR 0.44 TCGA-F5-6814-01 4 41986572 41986572 G T DCAF4L1 3'UTR 0.26 TCGA-F5-6814-01 4 41986731 41986731 A C DCAF4L1 3'UTR 0.24 TCGA-F5-6814-01 4 41988268 41988268 G A DCAF4L1 3'UTR 0.44 TCGA-F5-6814-01 4 41988471 41988471 A C DCAF4L1 3'UTR 0.56 TCGA-F5-6814-01 4 4198935 4198935 G T OTOP1 Silent p.V542V 0.21 TCGA-F5-6814-01 4 42037321 42037321 G T SLC30A9 Nonsense_Mutation p.E214* 0.30 TCGA-F5-6814-01 4 42088210 42088210 T G SLC30A9 3'UTR 0.09 TCGA-F5-6814-01 4 42400117 42400117 G A SHISA3 Missense_Mutation p.R15H 0.67 tolerated_low_confidence(0.24) unknown(0) TCGA-F5-6814-01 4 42403141 42403141 G A SHISA3 Silent p.S130S 0.40 TCGA-F5-6814-01 4 42602529 42602529 C A ATP8A1 Missense_Mutation p.R139I 0.35 deleterious(0) probably_damaging(0.972) TCGA-F5-6814-01 4 437198 437198 C A ZNF721 Missense_Mutation p.R353I 0.43 tolerated(0.17) possibly_damaging(0.901) TCGA-F5-6814-01 4 44176914 44176914 C A KCTD8 Nonsense_Mutation p.E439* 0.14 TCGA-F5-6814-01 4 44624360 44624360 T G YIPF7 3'UTR 0.30 TCGA-F5-6814-01 4 44652022 44652022 T C YIPF7 Silent p.G56G 0.38 TCGA-F5-6814-01 4 46042952 46042952 G T GABRG1 3'UTR 0.39 TCGA-F5-6814-01 4 46930736 46930736 T G GABRA4 Missense_Mutation p.N391H 0.24 tolerated(0.06) probably_damaging(0.953) TCGA-F5-6814-01 4 46976343 46976343 C A GABRA4 Missense_Mutation p.E209D 0.31 tolerated(0.55) possibly_damaging(0.791) TCGA-F5-6814-01 4 47033650 47033650 C A GABRB1 5'UTR 0.36 TCGA-F5-6814-01 4 47408778 47408778 G A GABRB1 Silent p.A305A 0.08 TCGA-F5-6814-01 4 47453572 47453572 A C COMMD8 3'UTR 0.40 TCGA-F5-6814-01 4 47525052 47525052 G A ATP10D Missense_Mutation p.R170Q 0.23 tolerated(0.32) benign(0.004) TCGA-F5-6814-01 4 47628537 47628537 C A CORIN Nonsense_Mutation p.E734* 0.38 TCGA-F5-6814-01 4 47647180 47647180 T C CORIN Silent p.P625P 0.31 TCGA-F5-6814-01 4 47667213 47667213 A C CORIN Missense_Mutation p.N475K 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 47667257 47667257 C T CORIN Missense_Mutation p.E461K 0.34 tolerated(0.07) probably_damaging(0.936) TCGA-F5-6814-01 4 47765448 47765448 G A CORIN Silent p.L189L 0.38 TCGA-F5-6814-01 4 47938581 47938581 T C CNGA1 Missense_Mutation p.I713V 0.19 deleterious(0.01) benign(0.335) TCGA-F5-6814-01 4 47939001 47939001 C A CNGA1 Missense_Mutation p.D573Y 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 47954701 47954701 C A CNGA1 Missense_Mutation p.K75N 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 4 48097223 48097223 A C TXK Missense_Mutation p.F173C 0.50 deleterious(0) probably_damaging(0.975) TCGA-F5-6814-01 4 48379926 48379926 G T SLAIN2 Missense_Mutation p.Q184H 0.28 tolerated(0.13) benign(0.006) TCGA-F5-6814-01 4 48494977 48494977 G T ZAR1 Missense_Mutation p.R360I 0.21 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 4 48525088 48525088 G A FRYL Missense_Mutation p.R2451C 0.09 deleterious(0) possibly_damaging(0.816) TCGA-F5-6814-01 4 48546858 48546858 A C FRYL Silent p.A1781A 0.12 TCGA-F5-6814-01 4 48567691 48567691 T C FRYL Missense_Mutation p.I1063V 0.33 tolerated(0.06) benign(0) TCGA-F5-6814-01 4 48835495 48835495 A C OCIAD1 Silent p.R46R 0.32 TCGA-F5-6814-01 4 49064022 49064022 A C CWH43 3'UTR 0.32 TCGA-F5-6814-01 4 514955 514955 C A PIGG Missense_Mutation p.L409I 0.13 tolerated(0.2) benign(0.023) TCGA-F5-6814-01 4 5170057 5170057 A C STK32B Missense_Mutation p.K47T 0.26 deleterious(0.03) benign(0.023) TCGA-F5-6814-01 4 52743949 52743949 C T DCUN1D4 Missense_Mutation p.S91L 0.64 tolerated(0.06) benign(0.011) TCGA-F5-6814-01 4 52938248 52938248 T G SPATA18 Missense_Mutation p.D228E 0.10 tolerated(0.2) benign(0.259) TCGA-F5-6814-01 4 52946068 52946068 A C SPATA18 Missense_Mutation p.E446D 0.10 deleterious(0.01) probably_damaging(0.953) TCGA-F5-6814-01 4 54325666 54325666 A G FIP1L1 3'UTR 0.18 TCGA-F5-6814-01 4 55140764 55140764 T G PDGFRA Missense_Mutation p.L542R 0.13 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 55144567 55144567 G T PDGFRA Missense_Mutation p.D681Y 0.23 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 4 5526922 5526922 C A C4orf6 5'UTR 0.64 TCGA-F5-6814-01 4 5564626 5564626 C A EVC2 Missense_Mutation p.K1292N 0.50 deleterious(0) possibly_damaging(0.848) TCGA-F5-6814-01 4 55973993 55973993 T C KDR Silent p.Q441Q 0.41 TCGA-F5-6814-01 4 56345093 56345093 G T CLOCK Missense_Mutation p.Q49K 0.11 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 4 56448360 56448360 G A PDCL2 Silent p.F17F 0.39 TCGA-F5-6814-01 4 5667352 5667352 C T EVC2 Missense_Mutation p.A299T 0.14 tolerated(0.11) benign(0.297) TCGA-F5-6814-01 4 57181850 57181850 T C KIAA1211 Missense_Mutation p.F728L 0.22 deleterious(0) benign(0.294) TCGA-F5-6814-01 4 5721024 5721024 C T EVC Missense_Mutation p.T75I 0.09 tolerated(0.08) benign(0.232) TCGA-F5-6814-01 4 57215765 57215765 T G AASDH Missense_Mutation p.N718H 0.32 tolerated(0.22) benign(0.005) TCGA-F5-6814-01 4 57272819 57272820 - T PPAT Frame_Shift_Ins p.L82Ifs*20 0.19 TCGA-F5-6814-01 4 57349351 57349351 C T SRP72 Missense_Mutation p.A291V 0.09 tolerated(0.24) benign(0.122) TCGA-F5-6814-01 4 57356562 57356562 C T SRP72 Missense_Mutation p.R462W 0.32 deleterious(0) benign(0.427) TCGA-F5-6814-01 4 57796249 57796249 A G REST Missense_Mutation p.K409E 0.42 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 4 57839402 57839402 T G NOA1 Missense_Mutation p.K476T 0.11 tolerated(0.13) benign(0.081) TCGA-F5-6814-01 4 5830320 5830320 C T CRMP1 Missense_Mutation p.V567I 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-F5-6814-01 4 5837789 5837789 G A CRMP1 Silent p.N492N 0.50 TCGA-F5-6814-01 4 6027937 6027937 C T JAKMIP1 3'UTR 0.15 TCGA-F5-6814-01 4 6081909 6081909 T C JAKMIP1 Missense_Mutation p.D411G 0.22 deleterious(0.01) possibly_damaging(0.487) TCGA-F5-6814-01 4 6082036 6082036 C A JAKMIP1 Nonsense_Mutation p.E369* 0.26 TCGA-F5-6814-01 4 6107391 6107391 C T JAKMIP1 Missense_Mutation p.D145N 0.21 deleterious(0) possibly_damaging(0.49) TCGA-F5-6814-01 4 62863984 62863984 G T LPHN3 Splice_Site p.X1064_splice 0.50 TCGA-F5-6814-01 4 62910205 62910205 G A LPHN3 Missense_Mutation p.R1183Q 0.51 deleterious(0.02) probably_damaging(0.964) TCGA-F5-6814-01 4 62935990 62935990 G T LPHN3 Missense_Mutation p.K1258N 0.37 deleterious(0.05) probably_damaging(0.994) TCGA-F5-6814-01 4 6473898 6473898 T C PPP2R2C Missense_Mutation p.Y20C 0.20 deleterious_low_confidence(0.05) benign(0.003) TCGA-F5-6814-01 4 65145881 65145881 G T TECRL Missense_Mutation p.S334Y 0.10 deleterious(0.02) probably_damaging(0.939) TCGA-F5-6814-01 4 655950 655950 A C PDE6B Missense_Mutation p.S548R 0.38 tolerated(1) benign(0.097) TCGA-F5-6814-01 4 658005 658005 C T PDE6B Silent p.I708I 0.32 TCGA-F5-6814-01 4 66189815 66189815 G A EPHA5 3'UTR 0.12 TCGA-F5-6814-01 4 672782 672782 C A MYL5 Missense_Mutation p.F49L 0.15 deleterious(0.04) probably_damaging(0.992) TCGA-F5-6814-01 4 68358653 68358653 C A CENPC Nonsense_Mutation p.E785* 0.08 TCGA-F5-6814-01 4 6843915 6843915 G A KIAA0232 Missense_Mutation p.R118Q 0.19 deleterious(0.04) possibly_damaging(0.902) TCGA-F5-6814-01 4 68472116 68472116 T C STAP1 3'UTR 0.08 TCGA-F5-6814-01 4 68534320 68534320 G A UBA6 Nonsense_Mutation p.R248* 0.17 TCGA-F5-6814-01 4 68562417 68562417 T G UBA6 Missense_Mutation p.K27T 0.10 tolerated(0.56) benign(0) TCGA-F5-6814-01 4 68610449 68610449 G T GNRHR Missense_Mutation p.F193L 0.36 deleterious(0) probably_damaging(0.951) TCGA-F5-6814-01 4 6863077 6863077 G A KIAA0232 Missense_Mutation p.R323Q 0.06 deleterious(0) possibly_damaging(0.871) TCGA-F5-6814-01 4 68692988 68692988 C A TMPRSS11D Nonsense_Mutation p.E315* 0.21 TCGA-F5-6814-01 4 68693158 68693158 A C TMPRSS11D Missense_Mutation p.I258S 0.13 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 4 68708325 68708325 C A TMPRSS11D Nonsense_Mutation p.E90* 0.32 TCGA-F5-6814-01 4 68930434 68930434 G A TMPRSS11F Silent p.F328F 0.36 TCGA-F5-6814-01 4 69107480 69107480 C T TMPRSS11B Silent p.T17T 0.40 TCGA-F5-6814-01 4 69107502 69107502 C A TMPRSS11B Missense_Mutation p.R10I 0.45 deleterious(0.02) possibly_damaging(0.564) TCGA-F5-6814-01 4 69195767 69195767 C A YTHDC1 Missense_Mutation p.M434I 0.21 deleterious(0.04) benign(0.217) TCGA-F5-6814-01 4 69195951 69195951 T G YTHDC1 Silent p.I400I 0.12 TCGA-F5-6814-01 4 69203031 69203031 C A YTHDC1 Missense_Mutation p.E199D 0.48 tolerated_low_confidence(0.53) unknown(0) TCGA-F5-6814-01 4 69203085 69203085 A C YTHDC1 Silent p.S181S 0.25 TCGA-F5-6814-01 4 69203598 69203598 G A YTHDC1 Nonsense_Mutation p.R51* 0.25 TCGA-F5-6814-01 4 69204029 69204029 C A YTHDC1 Missense_Mutation p.E34D 0.08 tolerated_low_confidence(0.15) unknown(0) TCGA-F5-6814-01 4 69417606 69417606 C A UGT2B17 Missense_Mutation p.K343N 0.50 tolerated(0.07) benign(0.406) TCGA-F5-6814-01 4 69433767 69433767 A G UGT2B17 Missense_Mutation p.F146L 0.54 deleterious(0.01) possibly_damaging(0.623) TCGA-F5-6814-01 4 69512685 69512685 A C UGT2B15 3'UTR 0.17 TCGA-F5-6814-01 4 69513072 69513072 C A UGT2B15 Missense_Mutation p.R448I 0.34 deleterious(0.02) benign(0.008) TCGA-F5-6814-01 4 69535994 69535994 C T UGT2B15 Missense_Mutation p.E115K 0.42 tolerated(0.48) benign(0.044) TCGA-F5-6814-01 4 69682119 69682119 G T UGT2B10 Missense_Mutation p.D128Y 0.48 deleterious(0) possibly_damaging(0.907) TCGA-F5-6814-01 4 69682153 69682153 T C UGT2B10 Missense_Mutation p.L139P 0.10 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 4 69795402 69795402 A C UGT2A3 3'UTR 0.18 TCGA-F5-6814-01 4 69817145 69817145 C A UGT2A3 Missense_Mutation p.D112Y 0.34 deleterious(0) benign(0.392) TCGA-F5-6814-01 4 69972942 69972942 C G UGT2B7 Missense_Mutation p.T351S 0.40 deleterious(0.01) benign(0.354) TCGA-F5-6814-01 4 70070289 70070289 A G UGT2B11 Missense_Mutation p.M390T 0.41 deleterious(0) possibly_damaging(0.715) TCGA-F5-6814-01 4 70080140 70080140 G A UGT2B11 Nonsense_Mutation p.R101* 0.36 TCGA-F5-6814-01 4 70160600 70160600 G T UGT2B28 3'UTR 0.39 TCGA-F5-6814-01 4 70360904 70360904 T G UGT2B4 Missense_Mutation p.I226L 0.15 tolerated(0.56) benign(0.002) TCGA-F5-6814-01 4 70361434 70361434 C A UGT2B4 Missense_Mutation p.R49I 0.19 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 4 7044018 7044018 G T CCDC96 Silent p.V216V 0.35 TCGA-F5-6814-01 4 70455102 70455102 T G UGT2A1 Missense_Mutation p.K690N 0.17 tolerated(0.13) benign(0.143) TCGA-F5-6814-01 4 70465058 70465058 C T UGT2A1 Missense_Mutation p.R467Q 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 4 70707773 70707773 A C SULT1E1 Missense_Mutation p.F275C 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 70709959 70709959 A G SULT1E1 Missense_Mutation p.M231T 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 71200844 71200844 G A CABS1 Missense_Mutation p.A30T 0.40 tolerated(0.17) probably_damaging(0.95) TCGA-F5-6814-01 4 71201947 71201947 G T CABS1 3'UTR 0.34 TCGA-F5-6814-01 4 71458014 71458014 T G AMBN 5'UTR 0.40 TCGA-F5-6814-01 4 71510111 71510111 C A ENAM Missense_Mutation p.L990I 0.39 tolerated(0.12) benign(0.331) TCGA-F5-6814-01 4 71527815 71527815 C T IGJ Missense_Mutation p.R61Q 0.71 tolerated(0.12) benign(0.424) TCGA-F5-6814-01 4 71527924 71527924 C A IGJ Missense_Mutation p.D25Y 0.56 deleterious(0) possibly_damaging(0.718) TCGA-F5-6814-01 4 71532303 71532303 C A IGJ 5'UTR 0.52 TCGA-F5-6814-01 4 71630223 71630223 C T RUFY3 Missense_Mutation p.R168C 0.16 deleterious(0.01) possibly_damaging(0.66) TCGA-F5-6814-01 4 71701972 71701972 C T GRSF1 Silent p.P139P 0.40 TCGA-F5-6814-01 4 72319234 72319234 G T SLC4A4 Missense_Mutation p.D449Y 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 72897633 72897633 C T NPFFR2 Silent p.F5F 0.22 TCGA-F5-6814-01 4 72994549 72994549 A C NPFFR2 Missense_Mutation p.N183H 0.34 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 4 73013262 73013262 T G NPFFR2 Missense_Mutation p.I434M 0.36 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 4 73013271 73013271 C A NPFFR2 Missense_Mutation p.F437L 0.38 tolerated(0.08) probably_damaging(0.952) TCGA-F5-6814-01 4 73161487 73161487 T G ADAMTS3 Missense_Mutation p.K869N 0.39 deleterious(0) possibly_damaging(0.855) TCGA-F5-6814-01 4 73923917 73923917 G A COX18 Nonsense_Mutation p.R306* 0.26 TCGA-F5-6814-01 4 73944604 73944604 G T ANKRD17 Missense_Mutation p.S2388Y 0.43 benign(0.177) TCGA-F5-6814-01 4 73963986 73963986 T G ANKRD17 Missense_Mutation p.S1609R 0.11 benign(0.087) TCGA-F5-6814-01 4 73986612 73986612 C A ANKRD17 Nonsense_Mutation p.E1279* 0.40 TCGA-F5-6814-01 4 74275100 74275100 C A ALB Missense_Mutation p.P171T 0.23 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 4 74315108 74315108 G T AFP Missense_Mutation p.R372I 0.14 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 4 74351650 74351650 C T AFM Silent p.C114C 0.11 TCGA-F5-6814-01 4 74365779 74365779 C A AFM Missense_Mutation p.A494D 0.15 tolerated(0.17) benign(0.272) TCGA-F5-6814-01 4 74608172 74608172 G T IL8 Missense_Mutation p.E97D 0.31 tolerated(0.09) benign(0.283) TCGA-F5-6814-01 4 74608381 74608381 A C IL8 3'UTR 0.25 TCGA-F5-6814-01 4 75174283 75174283 T C EPGN Silent p.L11L 0.40 TCGA-F5-6814-01 4 75858563 75858563 T G PARM1 Missense_Mutation p.L9R 0.34 tolerated(0.07) possibly_damaging(0.452) TCGA-F5-6814-01 4 76447124 76447124 C A THAP6 Intron 0.30 TCGA-F5-6814-01 4 76582179 76582179 A C G3BP2 Missense_Mutation p.F124C 0.31 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 4 7666142 7666142 G A SORCS2 Missense_Mutation p.A339T 0.48 tolerated(0.06) benign(0.004) TCGA-F5-6814-01 4 76722345 76722345 C T USO1 Nonsense_Mutation p.R669* 0.08 TCGA-F5-6814-01 4 76785646 76785646 C T PPEF2 Missense_Mutation p.R652Q 0.38 deleterious(0.03) benign(0.067) TCGA-F5-6814-01 4 76857234 76857234 T A NAAA Intron 0.39 TCGA-F5-6814-01 4 76877224 76877224 C T SDAD1 Silent p.S640S 0.06 TCGA-F5-6814-01 4 76956225 76956225 G A CXCL11 Missense_Mutation p.S79L 0.42 deleterious(0.03) benign(0.235) TCGA-F5-6814-01 4 77247018 77247018 G A CCDC158 Missense_Mutation p.S1050F 0.35 tolerated(0.2) possibly_damaging(0.518) TCGA-F5-6814-01 4 77255206 77255206 C A CCDC158 Nonsense_Mutation p.E927* 0.34 TCGA-F5-6814-01 4 77288485 77288485 C A CCDC158 Nonsense_Mutation p.E598* 0.38 TCGA-F5-6814-01 4 77476764 77476764 C T SHROOM3 Silent p.V57V 0.33 TCGA-F5-6814-01 4 7765388 7765388 C T AFAP1 3'UTR 0.37 TCGA-F5-6814-01 4 77676269 77676269 G T SHROOM3 Missense_Mutation p.D1545Y 0.33 deleterious(0) benign(0.405) TCGA-F5-6814-01 4 77816843 77816843 C A SOWAHB Missense_Mutation p.W720C 0.32 deleterious(0.01) probably_damaging(0.926) TCGA-F5-6814-01 4 77917591 77917591 G A SEPT11 Missense_Mutation p.R14Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 4 77979781 77979781 G T CCNI Missense_Mutation p.S41Y 0.37 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 4 78528933 78528933 C A CXCL13 Missense_Mutation p.F47L 0.45 tolerated(0.76) benign(0.002) TCGA-F5-6814-01 4 78695786 78695786 A G CNOT6L Missense_Mutation p.I71T 0.29 deleterious(0) probably_damaging(0.925) TCGA-F5-6814-01 4 78804447 78804447 A C MRPL1 Missense_Mutation p.K65N 0.24 deleterious(0.02) benign(0.02) TCGA-F5-6814-01 4 78815305 78815305 G T MRPL1 Nonsense_Mutation p.E191* 0.38 TCGA-F5-6814-01 4 79203973 79203973 G A FRAS1 Splice_Site p.X370_splice 0.37 TCGA-F5-6814-01 4 79297016 79297016 C G FRAS1 Missense_Mutation p.S1092C 0.32 benign(0.353) TCGA-F5-6814-01 4 79393390 79393390 C T FRAS1 Silent p.D2476D 0.23 TCGA-F5-6814-01 4 79418073 79418073 A C FRAS1 Missense_Mutation p.K3025Q 0.14 possibly_damaging(0.811) TCGA-F5-6814-01 4 79458264 79458264 C A FRAS1 Missense_Mutation p.F3736L 0.23 possibly_damaging(0.636) TCGA-F5-6814-01 4 79833019 79833019 T C BMP2K Silent p.N1106N 0.40 TCGA-F5-6814-01 4 80328097 80328097 G A GK2 Missense_Mutation p.R420C 0.32 deleterious(0.01) possibly_damaging(0.631) TCGA-F5-6814-01 4 80952798 80952798 G T ANTXR2 Missense_Mutation p.P282H 0.34 deleterious(0) benign(0.236) TCGA-F5-6814-01 4 81188190 81188190 G T FGF5 Missense_Mutation p.G71V 0.41 tolerated(0.05) possibly_damaging(0.834) TCGA-F5-6814-01 4 81207757 81207757 G T FGF5 Missense_Mutation p.K246N 0.18 tolerated_low_confidence(0.06) benign(0.007) TCGA-F5-6814-01 4 81952598 81952598 G T BMP3 Missense_Mutation p.D54Y 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 82031748 82031748 C T PRKG2 Silent p.A598A 0.36 TCGA-F5-6814-01 4 82056359 82056359 C A PRKG2 Missense_Mutation p.D576Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 4 82355118 82355118 C A RASGEF1B Splice_Site p.X401_splice 0.33 TCGA-F5-6814-01 4 83424238 83424238 T G TMEM150C Missense_Mutation p.K36N 0.16 tolerated(0.37) benign(0.012) TCGA-F5-6814-01 4 83763392 83763392 C T SEC31A Missense_Mutation p.G957R 0.34 tolerated(0.21) benign(0.035) TCGA-F5-6814-01 4 83785665 83785665 G T SEC31A Missense_Mutation p.F428L 0.15 deleterious(0.05) benign(0.001) TCGA-F5-6814-01 4 83793139 83793139 C T SEC31A Missense_Mutation p.R247Q 0.30 deleterious(0) possibly_damaging(0.751) TCGA-F5-6814-01 4 83839802 83839802 C A THAP9 Missense_Mutation p.L813I 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-F5-6814-01 4 83849283 83849283 T G LIN54 Missense_Mutation p.K741T 0.15 deleterious(0) possibly_damaging(0.894) TCGA-F5-6814-01 4 8417708 8417708 G T ACOX3 Missense_Mutation p.L55I 0.12 tolerated(0.09) benign(0.391) TCGA-F5-6814-01 4 84227368 84227368 G A HPSE Silent p.F398F 0.44 TCGA-F5-6814-01 4 84388647 84388647 T G FAM175A Missense_Mutation p.K214T 0.29 tolerated(0.14) probably_damaging(0.944) TCGA-F5-6814-01 4 84516094 84516094 C T AGPAT9 Nonsense_Mutation p.R279* 0.43 TCGA-F5-6814-01 4 86340 86340 G T Z95704.2 RNA 0.58 TCGA-F5-6814-01 4 86916093 86916093 G A ARHGAP24 Missense_Mutation p.G429D 0.27 deleterious(0.01) probably_damaging(0.988) TCGA-F5-6814-01 4 87022292 87022292 C T MAPK10 Missense_Mutation p.G215S 0.41 tolerated(0.33) possibly_damaging(0.638) TCGA-F5-6814-01 4 87028608 87028608 C A MAPK10 Intron 0.62 TCGA-F5-6814-01 4 87080609 87080609 T C MAPK10 Silent p.K26K 0.43 TCGA-F5-6814-01 4 87556443 87556443 C T PTPN13 Missense_Mutation p.R12W 0.39 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 4 87655582 87655582 T G PTPN13 Missense_Mutation p.F662C 0.27 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 87656788 87656788 C A PTPN13 Silent p.P731P 0.24 TCGA-F5-6814-01 4 87728979 87728979 C T PTPN13 Nonsense_Mutation p.R2343* 0.25 TCGA-F5-6814-01 4 87770169 87770169 A C SLC10A6 Missense_Mutation p.F34V 0.36 tolerated(0.08) probably_damaging(0.998) TCGA-F5-6814-01 4 88106626 88106626 C T KLHL8 Missense_Mutation p.R181Q 0.37 tolerated(0.08) probably_damaging(0.965) TCGA-F5-6814-01 4 88375601 88375601 G A NUDT9 Missense_Mutation p.E290K 0.16 deleterious(0.02) possibly_damaging(0.577) TCGA-F5-6814-01 4 88534216 88534216 G A DSPP Missense_Mutation p.S293N 0.08 benign(0.026) TCGA-F5-6814-01 4 88537325 88537325 A G DSPP Missense_Mutation p.S1171G 0.11 unknown(0) TCGA-F5-6814-01 4 88537443 88537443 G T DSPP Missense_Mutation p.S1210I 0.10 unknown(0) TCGA-F5-6814-01 4 88537810 88537810 G A DSPP 3'UTR 0.25 TCGA-F5-6814-01 4 88583354 88583354 G T DMP1 Missense_Mutation p.D142Y 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 4 88583651 88583651 G T DMP1 Nonsense_Mutation p.E241* 0.47 TCGA-F5-6814-01 4 88583727 88583727 A C DMP1 Missense_Mutation p.K266T 0.43 tolerated(0.05) benign(0.056) TCGA-F5-6814-01 4 88732592 88732592 A C IBSP Missense_Mutation p.N162H 0.27 deleterious(0.04) possibly_damaging(0.787) TCGA-F5-6814-01 4 88964406 88964406 A C PKD2 Missense_Mutation p.K372N 0.26 tolerated(0.19) benign(0.422) TCGA-F5-6814-01 4 88989110 88989110 C T PKD2 Nonsense_Mutation p.R807* 0.16 TCGA-F5-6814-01 4 88989199 88989199 C T PKD2 Silent p.Y836Y 0.18 TCGA-F5-6814-01 4 89036118 89036118 C A ABCG2 Missense_Mutation p.D312Y 0.15 deleterious(0.03) benign(0.008) TCGA-F5-6814-01 4 89060954 89060954 G A ABCG2 Missense_Mutation p.S65L 0.28 tolerated(0.4) benign(0.002) TCGA-F5-6814-01 4 89345084 89345084 T G HERC6 Missense_Mutation p.Y596D 0.09 tolerated(0.17) benign(0.001) TCGA-F5-6814-01 4 89410477 89410477 A C HERC5 Missense_Mutation p.K708T 0.31 deleterious(0) benign(0.367) TCGA-F5-6814-01 4 89415426 89415426 T G HERC5 Silent p.L796L 0.25 TCGA-F5-6814-01 4 89415463 89415463 C T HERC5 Missense_Mutation p.L809F 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-F5-6814-01 4 89574045 89574045 G T HERC3 Missense_Mutation p.K163N 0.32 tolerated(0.29) benign(0.16) TCGA-F5-6814-01 4 89628141 89628141 C T HERC3 3'UTR 0.28 TCGA-F5-6814-01 4 89689185 89689185 C T FAM13A Missense_Mutation p.R495Q 0.11 tolerated(0.55) benign(0.002) TCGA-F5-6814-01 4 89744157 89744157 C A FAM13A Intron 0.30 TCGA-F5-6814-01 4 90035500 90035500 C T TIGD2 Nonsense_Mutation p.Q459* 0.21 TCGA-F5-6814-01 4 90650359 90650359 C A SNCA Nonsense_Mutation p.E126* 0.48 TCGA-F5-6814-01 4 90650363 90650363 A C SNCA Silent p.A124A 0.36 TCGA-F5-6814-01 4 90816256 90816256 C G MMRN1 Missense_Mutation p.P45R 0.31 deleterious_low_confidence(0.02) possibly_damaging(0.499) TCGA-F5-6814-01 4 90816623 90816623 C T MMRN1 Silent p.G167G 0.44 TCGA-F5-6814-01 4 90849098 90849098 G T MMRN1 Nonsense_Mutation p.E370* 0.30 TCGA-F5-6814-01 4 91230004 91230004 A C CCSER1 Missense_Mutation p.K190T 0.32 deleterious(0) possibly_damaging(0.461) TCGA-F5-6814-01 4 94547443 94547443 C T GRID2 Silent p.F739F 0.43 TCGA-F5-6814-01 4 94751004 94751004 G T ATOH1 Missense_Mutation p.K309N 0.29 deleterious(0.04) probably_damaging(0.956) TCGA-F5-6814-01 4 949674 949674 A G TMEM175 Missense_Mutation p.I280V 0.21 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 4 95201809 95201809 G A SMARCAD1 Missense_Mutation p.E831K 0.23 deleterious(0) probably_damaging(0.922) TCGA-F5-6814-01 4 95585275 95585275 T G PDLIM5 3'UTR 0.50 TCGA-F5-6814-01 4 96127803 96127803 G A UNC5C Silent p.N626N 0.13 TCGA-F5-6814-01 4 96256768 96256768 G T UNC5C Missense_Mutation p.H47N 0.46 tolerated(0.69) benign(0.031) TCGA-F5-6814-01 4 96761617 96761617 A G PDHA2 Missense_Mutation p.I106V 0.36 deleterious(0.04) possibly_damaging(0.684) TCGA-F5-6814-01 4 9784321 9784321 G A DRD5 Missense_Mutation p.R223Q 0.31 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 4 9784960 9784960 G A DRD5 Missense_Mutation p.R436H 0.20 tolerated(0.16) benign(0.009) TCGA-F5-6814-01 4 98893582 98893582 A C STPG2 Missense_Mutation p.F261C 0.16 deleterious(0.01) probably_damaging(0.935) TCGA-F5-6814-01 4 99408005 99408005 C T TSPAN5 Missense_Mutation p.D55N 0.12 tolerated(0.99) benign(0.229) TCGA-F5-6814-01 4 99808250 99808250 C T EIF4E Missense_Mutation p.D127N 0.08 deleterious(0.03) possibly_damaging(0.534) TCGA-F5-6814-01 4 99997660 99997660 A G ADH5 Missense_Mutation p.V203A 0.31 deleterious(0) possibly_damaging(0.563) TCGA-F5-6814-01 5 100231433 100231433 C T ST8SIA4 Missense_Mutation p.R57Q 0.27 benign(0) TCGA-F5-6814-01 5 100238578 100238578 T C ST8SIA4 Missense_Mutation p.T28A 0.23 benign(0.008) TCGA-F5-6814-01 5 101576431 101576431 G A SLCO4C1 Nonsense_Mutation p.R623* 0.26 TCGA-F5-6814-01 5 101592977 101592977 A C SLCO4C1 Missense_Mutation p.I437M 0.09 deleterious(0.01) possibly_damaging(0.824) TCGA-F5-6814-01 5 101592986 101592986 G A SLCO4C1 Silent p.L434L 0.35 TCGA-F5-6814-01 5 101735395 101735395 C A SLCO6A1 Nonsense_Mutation p.E560* 0.25 TCGA-F5-6814-01 5 101815998 101815998 C A SLCO6A1 Missense_Mutation p.D167Y 0.09 deleterious(0.01) possibly_damaging(0.836) TCGA-F5-6814-01 5 10227742 10227742 C A FAM173B Missense_Mutation p.K171N 0.50 tolerated(0.14) benign(0.128) TCGA-F5-6814-01 5 10236611 10236611 A C FAM173B Missense_Mutation p.F141L 0.25 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 5 102894894 102894894 G A NUDT12 Missense_Mutation p.T161I 0.39 tolerated(0.09) possibly_damaging(0.583) TCGA-F5-6814-01 5 10290881 10290881 G T CMBL 5'UTR 0.42 TCGA-F5-6814-01 5 10377953 10377953 G A MARCH6 Silent p.P21P 0.30 TCGA-F5-6814-01 5 10377988 10377988 A C MARCH6 Missense_Mutation p.K33T 0.13 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 5 10410318 10410318 G A MARCH6 Missense_Mutation p.E541K 0.46 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 5 10450201 10450201 G A ROPN1L Silent p.A131A 0.36 TCGA-F5-6814-01 5 106723423 106723423 G T EFNA5 Silent p.V156V 0.36 TCGA-F5-6814-01 5 107006300 107006300 C A EFNA5 Missense_Mutation p.E5D 0.33 tolerated(0.25) benign(0.01) TCGA-F5-6814-01 5 107700636 107700636 T C FBXL17 Missense_Mutation p.I393V 0.25 tolerated(0.11) benign(0.243) TCGA-F5-6814-01 5 108290428 108290428 A C FER Splice_Site p.X444_splice 0.32 TCGA-F5-6814-01 5 108516546 108516546 C A FER Missense_Mutation p.S716Y 0.37 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 10973487 10973487 G T CTNND2 3'UTR 0.41 TCGA-F5-6814-01 5 109977972 109977972 G T TMEM232 Missense_Mutation p.L76I 0.34 tolerated(0.29) benign(0.019) TCGA-F5-6814-01 5 110411818 110411818 C A TSLP 3'UTR 0.24 TCGA-F5-6814-01 5 110434450 110434450 G T WDR36 Nonsense_Mutation p.E164* 0.28 TCGA-F5-6814-01 5 111312522 111312522 A G NREP 5'UTR 0.26 TCGA-F5-6814-01 5 111570355 111570355 G A EPB41L4A Nonsense_Mutation p.R355* 0.29 TCGA-F5-6814-01 5 11199691 11199691 G T CTNND2 Missense_Mutation p.A615D 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 112151238 112151238 C T APC Missense_Mutation p.S294F 0.23 benign(0.041) TCGA-F5-6814-01 5 112174134 112174134 C A APC Missense_Mutation p.S948Y 0.40 benign(0.168) TCGA-F5-6814-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.40 TCGA-F5-6814-01 5 112175490 112175490 C A APC Nonsense_Mutation p.S1400* 0.37 TCGA-F5-6814-01 5 112177368 112177368 C A APC Missense_Mutation p.S2026Y 0.55 probably_damaging(1) TCGA-F5-6814-01 5 112177901 112177901 C T APC Nonsense_Mutation p.R2204* 0.18 TCGA-F5-6814-01 5 112178000 112178000 C T APC Nonsense_Mutation p.R2237* 0.43 TCGA-F5-6814-01 5 112179325 112179325 T C APC Silent p.N2678N 0.25 TCGA-F5-6814-01 5 112179376 112179376 A C APC Missense_Mutation p.K2695N 0.30 possibly_damaging(0.854) TCGA-F5-6814-01 5 112228280 112228280 C T ZRSR1 Missense_Mutation p.A315V 0.11 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 5 112321534 112321534 G A DCP2 Missense_Mutation p.R19Q 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 112321570 112321570 A G DCP2 Missense_Mutation p.N31S 0.20 deleterious(0.01) possibly_damaging(0.796) TCGA-F5-6814-01 5 112339641 112339641 G A DCP2 Missense_Mutation p.R270Q 0.36 tolerated(0.11) possibly_damaging(0.509) TCGA-F5-6814-01 5 112343660 112343660 G A DCP2 Missense_Mutation p.R323K 0.17 tolerated_low_confidence(0.55) benign(0.005) TCGA-F5-6814-01 5 112364657 112364657 G A MCC Silent p.F951F 0.26 TCGA-F5-6814-01 5 112487017 112487017 C A MCC Missense_Mutation p.A244S 0.17 tolerated(0.42) benign(0.197) TCGA-F5-6814-01 5 112902856 112902856 C T YTHDC2 Silent p.V970V 0.21 TCGA-F5-6814-01 5 112903470 112903470 G A YTHDC2 Silent p.T1056T 0.09 TCGA-F5-6814-01 5 112926777 112926777 C T YTHDC2 Nonsense_Mutation p.R1289* 0.49 TCGA-F5-6814-01 5 11346659 11346659 T C CTNND2 Missense_Mutation p.T485A 0.36 tolerated(0.09) benign(0.005) TCGA-F5-6814-01 5 11346720 11346720 G A CTNND2 Silent p.V464V 0.32 TCGA-F5-6814-01 5 114466326 114466326 C A TRIM36 Nonsense_Mutation p.E599* 0.42 TCGA-F5-6814-01 5 115141152 115141152 G A CDO1 Missense_Mutation p.S194L 0.53 tolerated(0.23) benign(0.012) TCGA-F5-6814-01 5 115335464 115335464 G T AQPEP Missense_Mutation p.E460D 0.31 tolerated(0.35) possibly_damaging(0.882) TCGA-F5-6814-01 5 115335503 115335503 A C AQPEP Missense_Mutation p.E473D 0.20 tolerated(0.27) benign(0.071) TCGA-F5-6814-01 5 115782631 115782631 G A SEMA6A Missense_Mutation p.S924L 0.15 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 5 118506185 118506185 C T DMXL1 Missense_Mutation p.T1900I 0.23 tolerated(0.17) benign(0.009) TCGA-F5-6814-01 5 118513709 118513709 G A DMXL1 Missense_Mutation p.R2302Q 0.21 tolerated(0.42) benign(0.002) TCGA-F5-6814-01 5 118556212 118556212 G T DMXL1 Nonsense_Mutation p.E2666* 0.23 TCGA-F5-6814-01 5 118835117 118835117 G T HSD17B4 Missense_Mutation p.D385Y 0.24 deleterious(0.05) possibly_damaging(0.639) TCGA-F5-6814-01 5 118862895 118862895 G T HSD17B4 Missense_Mutation p.R608I 0.29 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 5 121187863 121187863 C T FTMT Missense_Mutation p.R69C 0.42 deleterious(0.04) benign(0.164) TCGA-F5-6814-01 5 121488940 121488940 T G ZNF474 3'UTR 0.28 TCGA-F5-6814-01 5 121767759 121767759 C T SNCAIP Silent p.Y426Y 0.28 TCGA-F5-6814-01 5 121776329 121776329 G T SNCAIP Missense_Mutation p.K434N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 5 122361644 122361644 C A PPIC Missense_Mutation p.E115D 0.19 tolerated(0.52) benign(0.001) TCGA-F5-6814-01 5 122685653 122685653 C A CEP120 Missense_Mutation p.R904I 0.14 deleterious(0) possibly_damaging(0.866) TCGA-F5-6814-01 5 122888821 122888821 G T CSNK1G3 Nonsense_Mutation p.E67* 0.12 TCGA-F5-6814-01 5 123982625 123982625 G A ZNF608 Missense_Mutation p.A1151V 0.38 tolerated(0.07) probably_damaging(0.997) TCGA-F5-6814-01 5 123984315 123984315 C T ZNF608 Missense_Mutation p.E588K 0.27 deleterious(0.01) probably_damaging(0.948) TCGA-F5-6814-01 5 1244402 1244402 T G SLC6A18 Missense_Mutation p.I470M 0.46 tolerated(0.06) probably_damaging(0.93) TCGA-F5-6814-01 5 125890003 125890003 A G ALDH7A1 Silent p.G392G 0.18 TCGA-F5-6814-01 5 125894980 125894980 G A ALDH7A1 Silent p.F320F 0.14 TCGA-F5-6814-01 5 126154684 126154684 G A LMNB1 Missense_Mutation p.R337H 0.39 deleterious(0.03) benign(0.16) TCGA-F5-6814-01 5 126753401 126753401 C A MEGF10 Missense_Mutation p.S401Y 0.23 deleterious(0) possibly_damaging(0.892) TCGA-F5-6814-01 5 126883688 126883688 C T PRRC1 Intron 0.24 TCGA-F5-6814-01 5 126883750 126883750 C A PRRC1 Intron 0.48 TCGA-F5-6814-01 5 126993551 126993551 T G CTXN3 3'UTR 0.34 TCGA-F5-6814-01 5 127493764 127493764 A G SLC12A2 Missense_Mutation p.T795A 0.37 tolerated(0.05) benign(0.014) TCGA-F5-6814-01 5 127520176 127520176 G T SLC12A2 Nonsense_Mutation p.E1140* 0.12 TCGA-F5-6814-01 5 127702117 127702117 A G FBN2 Missense_Mutation p.F752S 0.34 deleterious(0) possibly_damaging(0.899) TCGA-F5-6814-01 5 127714577 127714577 T C FBN2 Missense_Mutation p.D537G 0.11 deleterious(0.02) probably_damaging(0.936) TCGA-F5-6814-01 5 128362854 128362854 G A SLC27A6 Silent p.V428V 0.44 TCGA-F5-6814-01 5 128430666 128430666 G A ISOC1 Silent p.V69V 0.52 TCGA-F5-6814-01 5 129520641 129520641 G A CHSY3 Silent p.K602K 0.30 TCGA-F5-6814-01 5 131007645 131007645 C T FNIP1 Missense_Mutation p.S831N 0.14 tolerated(0.4) benign(0.003) TCGA-F5-6814-01 5 131298357 131298357 T G ACSL6 Missense_Mutation p.K576N 0.10 deleterious(0) probably_damaging(0.955) TCGA-F5-6814-01 5 131671552 131671552 T G SLC22A4 Missense_Mutation p.F435V 0.41 deleterious(0) benign(0.37) TCGA-F5-6814-01 5 131953856 131953856 C A RAD50 Missense_Mutation p.H1087N 0.09 tolerated(0.07) benign(0.017) TCGA-F5-6814-01 5 132038594 132038594 C A KIF3A Nonsense_Mutation p.E517* 0.21 TCGA-F5-6814-01 5 132150750 132150750 T C SOWAHA Silent p.F479F 0.15 TCGA-F5-6814-01 5 132151393 132151393 T G SOWAHA 3'UTR 0.32 TCGA-F5-6814-01 5 132151663 132151663 G T SOWAHA 3'UTR 0.46 TCGA-F5-6814-01 5 132219242 132219242 C A AFF4 Missense_Mutation p.G1052W 0.33 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 5 132342482 132342482 C A ZCCHC10 Nonsense_Mutation p.E58* 0.22 TCGA-F5-6814-01 5 132425299 132425299 A C HSPA4 Missense_Mutation p.K430N 0.11 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 5 133295578 133295578 C T C5orf15 Silent p.T91T 0.09 TCGA-F5-6814-01 5 133695617 133695617 G A CDKL3 Nonsense_Mutation p.R111* 0.31 TCGA-F5-6814-01 5 133996906 133996906 G T SEC24A Missense_Mutation p.K65N 0.38 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-F5-6814-01 5 134116919 134116919 G T DDX46 Missense_Mutation p.D288Y 0.11 deleterious(0) probably_damaging(0.947) TCGA-F5-6814-01 5 134154549 134154549 G A DDX46 Splice_Site p.X944_splice 0.20 TCGA-F5-6814-01 5 134194901 134194901 T G C5orf24 3'UTR 0.31 TCGA-F5-6814-01 5 134235494 134235494 G T TXNDC15 3'UTR 0.36 TCGA-F5-6814-01 5 134785285 134785285 G A TIFAB Silent p.R115R 0.21 TCGA-F5-6814-01 5 135188257 135188257 C T SLC25A48 Silent p.F56F 0.40 TCGA-F5-6814-01 5 135223721 135223721 G A SLC25A48 Missense_Mutation p.G141E 0.37 tolerated(0.2) benign(0.005) TCGA-F5-6814-01 5 135229724 135229724 C A IL9 Missense_Mutation p.K100N 0.35 deleterious(0.01) benign(0.115) TCGA-F5-6814-01 5 135276876 135276876 A C FBXL21 RNA 0.39 TCGA-F5-6814-01 5 135276973 135276973 C T FBXL21 RNA 0.33 TCGA-F5-6814-01 5 135587470 135587470 G A TRPC7 Silent p.F482F 0.56 TCGA-F5-6814-01 5 13717498 13717498 C T DNAH5 Missense_Mutation p.E4211K 0.28 possibly_damaging(0.635) TCGA-F5-6814-01 5 13717530 13717530 T A DNAH5 Missense_Mutation p.K4200M 0.19 probably_damaging(0.934) TCGA-F5-6814-01 5 137217763 137217763 A G MYOT Missense_Mutation p.D262G 0.23 deleterious(0) benign(0.134) TCGA-F5-6814-01 5 137221863 137221863 G T MYOT Missense_Mutation p.R384I 0.36 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 5 137235267 137235267 G A PKD2L2 Missense_Mutation p.R196Q 0.17 tolerated(0.09) benign(0.009) TCGA-F5-6814-01 5 137242064 137242064 G T PKD2L2 Nonsense_Mutation p.E306* 0.43 TCGA-F5-6814-01 5 137257324 137257324 G T PKD2L2 Splice_Site p.X443_splice 0.13 TCGA-F5-6814-01 5 137284844 137284844 A C FAM13B Missense_Mutation p.F632V 0.32 deleterious(0.02) benign(0.08) TCGA-F5-6814-01 5 137323246 137323246 C T FAM13B Missense_Mutation p.S317N 0.29 tolerated(0.1) benign(0.007) TCGA-F5-6814-01 5 137354803 137354803 C A FAM13B 5'UTR 0.39 TCGA-F5-6814-01 5 137419708 137419708 G T WNT8A 5'Flank 0.39 TCGA-F5-6814-01 5 137464230 137464230 G A NME5 Missense_Mutation p.A125V 0.30 deleterious(0.05) possibly_damaging(0.802) TCGA-F5-6814-01 5 137474376 137474376 C A NME5 Missense_Mutation p.D32Y 0.10 deleterious(0) possibly_damaging(0.873) TCGA-F5-6814-01 5 137475830 137475830 C A BRD8 Missense_Mutation p.R1214I 0.32 deleterious_low_confidence(0.03) benign(0.267) TCGA-F5-6814-01 5 137476470 137476470 A C BRD8 Missense_Mutation p.V1180G 0.42 deleterious(0) possibly_damaging(0.564) TCGA-F5-6814-01 5 137486532 137486532 C T BRD8 Missense_Mutation p.V1008I 0.46 tolerated_low_confidence(0.17) benign(0.001) TCGA-F5-6814-01 5 137627773 137627773 C T CDC25C Silent p.S216S 0.36 TCGA-F5-6814-01 5 137627783 137627783 C T CDC25C Missense_Mutation p.R213H 0.28 deleterious(0.02) benign(0.038) TCGA-F5-6814-01 5 13766257 13766257 C T DNAH5 Missense_Mutation p.R3310H 0.36 benign(0.072) TCGA-F5-6814-01 5 13769236 13769236 C A DNAH5 Nonsense_Mutation p.E3244* 0.23 TCGA-F5-6814-01 5 137781460 137781460 C T REEP2 3'UTR 0.40 TCGA-F5-6814-01 5 13820548 13820548 C T DNAH5 Missense_Mutation p.E2250K 0.17 benign(0.305) TCGA-F5-6814-01 5 138209378 138209378 C A LRRTM2 Missense_Mutation p.S291I 0.14 tolerated(0.08) benign(0.261) TCGA-F5-6814-01 5 138209446 138209446 G A LRRTM2 Silent p.I268I 0.11 TCGA-F5-6814-01 5 13830866 13830866 A T DNAH5 Silent p.A1967A 0.30 TCGA-F5-6814-01 5 138661268 138661268 A G MATR3 Missense_Mutation p.D763G 0.09 tolerated(0.05) benign(0.039) TCGA-F5-6814-01 5 138699537 138699537 G A PAIP2 Missense_Mutation p.G22S 0.43 tolerated(0.14) probably_damaging(0.937) TCGA-F5-6814-01 5 138758460 138758460 A G DNAJC18 Missense_Mutation p.V239A 0.09 deleterious(0) benign(0.156) TCGA-F5-6814-01 5 13900515 13900515 C A DNAH5 Nonsense_Mutation p.E687* 0.26 TCGA-F5-6814-01 5 139216778 139216778 G T PSD2 Missense_Mutation p.K540N 0.16 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 5 13928280 13928280 C A DNAH5 Missense_Mutation p.R67I 0.26 benign(0.308) TCGA-F5-6814-01 5 139494825 139494825 G T PURA 3'UTR 0.35 TCGA-F5-6814-01 5 139495089 139495089 G T PURA 3'UTR 0.10 TCGA-F5-6814-01 5 139507765 139507765 T G IGIP 5'UTR 0.15 TCGA-F5-6814-01 5 139743373 139743373 C A SLC4A9 Missense_Mutation p.F404L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 5 139866636 139866636 G A ANKHD1 Missense_Mutation p.V746M 0.19 unknown(0) TCGA-F5-6814-01 5 139876352 139876352 G T ANKHD1 Missense_Mutation p.K831N 0.10 unknown(0) TCGA-F5-6814-01 5 140011913 140011913 T C CD14 Missense_Mutation p.H219R 0.45 tolerated(0.8) benign(0.029) TCGA-F5-6814-01 5 140021726 140021726 G T TMCO6 Intron 0.26 TCGA-F5-6814-01 5 140042017 140042017 A C IK 3'UTR 0.55 TCGA-F5-6814-01 5 140051174 140051174 G A DND1 Missense_Mutation p.R256W 0.54 tolerated(0.19) possibly_damaging(0.513) TCGA-F5-6814-01 5 140166486 140166486 A G PCDHA1 Missense_Mutation p.E204G 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.523) TCGA-F5-6814-01 5 140186800 140186800 G A PCDHA4 Missense_Mutation p.E10K 0.49 tolerated_low_confidence(0.48) benign(0.004) TCGA-F5-6814-01 5 140208264 140208264 A T PCDHA6 Missense_Mutation p.L196F 0.48 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F5-6814-01 5 140221633 140221633 G A PCDHA8 Missense_Mutation p.E243K 0.21 deleterious_low_confidence(0) benign(0.027) TCGA-F5-6814-01 5 140228477 140228477 T C PCDHA9 Missense_Mutation p.F133L 0.21 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-F5-6814-01 5 140228494 140228494 G T PCDHA9 Missense_Mutation p.K138N 0.24 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-F5-6814-01 5 140228555 140228555 G A PCDHA9 Missense_Mutation p.D159N 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F5-6814-01 5 140228634 140228634 G A PCDHA9 Missense_Mutation p.S185N 0.17 tolerated_low_confidence(1) benign(0.004) TCGA-F5-6814-01 5 140230442 140230442 G T PCDHA9 Nonsense_Mutation p.E788* 0.29 TCGA-F5-6814-01 5 140230652 140230652 G T PCDHA9 Intron 0.10 TCGA-F5-6814-01 5 140231396 140231396 A C PCDHA9 Intron 0.32 TCGA-F5-6814-01 5 140232159 140232159 G A PCDHA9 Intron 0.38 TCGA-F5-6814-01 5 140232356 140232356 G T PCDHA9 Intron 0.43 TCGA-F5-6814-01 5 140248839 140248839 G T PCDHA11 Missense_Mutation p.D51Y 0.27 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 5 140249501 140249501 A C PCDHA11 Missense_Mutation p.E271D 0.11 tolerated_low_confidence(0.1) benign(0.287) TCGA-F5-6814-01 5 140255123 140255123 A C PCDHA12 Silent p.A22A 0.29 TCGA-F5-6814-01 5 140255829 140255829 G A PCDHA12 Missense_Mutation p.D258N 0.20 deleterious_low_confidence(0.02) benign(0.018) TCGA-F5-6814-01 5 140262379 140262379 G A PCDHA13 Missense_Mutation p.D176N 0.30 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-F5-6814-01 5 140262783 140262783 C T PCDHA13 Silent p.F310F 0.26 TCGA-F5-6814-01 5 140306809 140306809 G A PCDHAC1 Missense_Mutation p.R111Q 0.15 deleterious(0.02) benign(0.009) TCGA-F5-6814-01 5 1403068 1403068 T G SLC6A3 Missense_Mutation p.K579T 0.59 deleterious(0.03) benign(0.303) TCGA-F5-6814-01 5 140307655 140307655 A G PCDHAC1 Missense_Mutation p.N393S 0.24 tolerated(0.07) possibly_damaging(0.651) TCGA-F5-6814-01 5 140308838 140308838 A G PCDHAC1 Silent p.V787V 0.17 TCGA-F5-6814-01 5 140432001 140432001 G A PCDHB1 Missense_Mutation p.D316N 0.43 tolerated(0.19) probably_damaging(0.999) TCGA-F5-6814-01 5 140432385 140432385 G A PCDHB1 Missense_Mutation p.D444N 0.38 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 5 140474500 140474500 G T PCDHB2 Missense_Mutation p.E42D 0.17 deleterious_low_confidence(0.05) benign(0.139) TCGA-F5-6814-01 5 140474789 140474789 G T PCDHB2 Nonsense_Mutation p.E139* 0.46 TCGA-F5-6814-01 5 140475270 140475270 A C PCDHB2 Missense_Mutation p.K299T 0.26 tolerated_low_confidence(0.63) benign(0.004) TCGA-F5-6814-01 5 140482573 140482573 G T PCDHB3 Missense_Mutation p.E780D 0.16 tolerated_low_confidence(0.12) benign(0.001) TCGA-F5-6814-01 5 140502683 140502683 G A PCDHB4 Missense_Mutation p.R368Q 0.24 deleterious_low_confidence(0.03) benign(0.171) TCGA-F5-6814-01 5 140502771 140502771 G T PCDHB4 Missense_Mutation p.K397N 0.38 deleterious(0.01) possibly_damaging(0.825) TCGA-F5-6814-01 5 140503159 140503159 G A PCDHB4 Missense_Mutation p.E527K 0.17 deleterious_low_confidence(0) possibly_damaging(0.764) TCGA-F5-6814-01 5 140515872 140515872 G T PCDHB5 Nonsense_Mutation p.E286* 0.26 TCGA-F5-6814-01 5 140515912 140515912 A G PCDHB5 Missense_Mutation p.E299G 0.27 deleterious_low_confidence(0.01) benign(0.101) TCGA-F5-6814-01 5 140516436 140516436 G A PCDHB5 Missense_Mutation p.A474T 0.26 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-F5-6814-01 5 140517490 140517490 C A PCDHB5 3'UTR 0.23 TCGA-F5-6814-01 5 140530736 140530736 C T PCDHB6 Missense_Mutation p.R300W 0.20 deleterious(0.01) possibly_damaging(0.75) TCGA-F5-6814-01 5 140532469 140532469 A C PCDHB6 3'UTR 0.09 TCGA-F5-6814-01 5 140532844 140532844 A C PCDHB6 3'UTR 0.23 TCGA-F5-6814-01 5 140552412 140552412 G T PCDHB7 5'UTR 0.41 TCGA-F5-6814-01 5 140555029 140555029 C A PCDHB7 3'UTR 0.10 TCGA-F5-6814-01 5 140555162 140555162 G T PCDHB7 3'UTR 0.11 TCGA-F5-6814-01 5 140555446 140555446 T G PCDHB7 3'UTR 0.09 TCGA-F5-6814-01 5 140555516 140555516 T C PCDHB7 3'UTR 0.10 TCGA-F5-6814-01 5 140555830 140555830 T G PCDHB7 3'UTR 0.11 TCGA-F5-6814-01 5 140557991 140557991 G T PCDHB8 Missense_Mutation p.D126Y 0.10 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-F5-6814-01 5 140558692 140558692 G T PCDHB8 Missense_Mutation p.E359D 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 5 140564101 140564101 C T PCDHB16 Missense_Mutation p.A656V 0.24 tolerated_low_confidence(1) benign(0.003) TCGA-F5-6814-01 5 140565525 140565525 A C PCDHB16 3'UTR 0.52 TCGA-F5-6814-01 5 140572254 140572254 C A PCDHB10 Silent p.S43S 0.47 TCGA-F5-6814-01 5 140573452 140573452 G A PCDHB10 Missense_Mutation p.D443N 0.28 deleterious_low_confidence(0) benign(0.279) TCGA-F5-6814-01 5 140579635 140579635 C T PCDHB11 Silent p.C96C 0.23 TCGA-F5-6814-01 5 140580396 140580396 C A PCDHB11 Nonsense_Mutation p.S350* 0.15 TCGA-F5-6814-01 5 140580724 140580724 C T PCDHB11 Silent p.F459F 0.32 TCGA-F5-6814-01 5 140589663 140589663 C A PCDHB12 Missense_Mutation p.S395Y 0.24 deleterious_low_confidence(0) benign(0.396) TCGA-F5-6814-01 5 140589865 140589865 G T PCDHB12 Missense_Mutation p.E462D 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-F5-6814-01 5 140591048 140591048 A C PCDHB12 3'UTR 0.26 TCGA-F5-6814-01 5 140591198 140591198 C T PCDHB12 3'UTR 0.33 TCGA-F5-6814-01 5 140593713 140593713 G T PCDHB13 Missense_Mutation p.K6N 0.15 tolerated_low_confidence(0.32) benign(0.006) TCGA-F5-6814-01 5 140594170 140594170 G A PCDHB13 Missense_Mutation p.E159K 0.08 tolerated_low_confidence(0.09) benign(0.002) TCGA-F5-6814-01 5 140596311 140596311 T G PCDHB13 3'UTR 0.13 TCGA-F5-6814-01 5 140602960 140602960 G A PCDHB14 5'Flank 0.38 TCGA-F5-6814-01 5 140604141 140604141 G T PCDHB14 Missense_Mutation p.R355I 0.19 deleterious_low_confidence(0.02) benign(0.002) TCGA-F5-6814-01 5 140605844 140605845 - A PCDHB14 3'UTR 0.21 TCGA-F5-6814-01 5 140615452 140615452 C T PCDHB18 RNA 0.46 TCGA-F5-6814-01 5 140626087 140626087 C T PCDHB15 Missense_Mutation p.S314L 0.19 deleterious_low_confidence(0.04) benign(0.043) TCGA-F5-6814-01 5 1406341 1406341 G A SLC6A3 Missense_Mutation p.R521W 0.22 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 5 140682911 140682911 C T SLC25A2 Silent p.S174S 0.33 TCGA-F5-6814-01 5 140698582 140698582 C A TAF7 Nonsense_Mutation p.E344* 0.25 TCGA-F5-6814-01 5 140699880 140699880 A G TAF7 5'UTR 0.29 TCGA-F5-6814-01 5 140710946 140710946 T G PCDHGA1 Missense_Mutation p.V232G 0.33 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-F5-6814-01 5 140719308 140719308 T C PCDHGA2 Missense_Mutation p.V257A 0.56 tolerated_low_confidence(0.05) possibly_damaging(0.461) TCGA-F5-6814-01 5 140720011 140720011 C T PCDHGA2 Silent p.F491F 0.69 TCGA-F5-6814-01 5 140723622 140723622 C T PCDHGA3 Nonsense_Mutation p.R8* 0.17 TCGA-F5-6814-01 5 140723649 140723649 T C PCDHGA3 Missense_Mutation p.C17R 0.30 deleterious_low_confidence(0.01) benign(0.293) TCGA-F5-6814-01 5 140732212 140732212 T G PCDHGB1 Silent p.A795A 0.28 TCGA-F5-6814-01 5 140739934 140739934 A C PCDHGB2 Missense_Mutation p.N78H 0.32 deleterious(0.01) probably_damaging(0.934) TCGA-F5-6814-01 5 140744023 140744023 C T PCDHGA5 Silent p.G42G 0.41 TCGA-F5-6814-01 5 140750199 140750199 G A PCDHGB3 Missense_Mutation p.E80K 0.41 tolerated(0.08) benign(0.115) TCGA-F5-6814-01 5 140750485 140750485 A C PCDHGB3 Missense_Mutation p.D175A 0.14 deleterious(0) benign(0.34) TCGA-F5-6814-01 5 140750584 140750584 A C PCDHGB3 Missense_Mutation p.H208P 0.31 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 5 140753705 140753705 C T PCDHGA6 Missense_Mutation p.L19F 0.36 tolerated_low_confidence(0.37) benign(0.016) TCGA-F5-6814-01 5 140754045 140754045 G A PCDHGA6 Missense_Mutation p.R132Q 0.30 tolerated_low_confidence(0.54) benign(0.006) TCGA-F5-6814-01 5 140763849 140763849 C T PCDHGA7 Silent p.I461I 0.44 TCGA-F5-6814-01 5 140764531 140764531 C A PCDHGA7 Missense_Mutation p.L689I 0.16 deleterious_low_confidence(0.04) benign(0.242) TCGA-F5-6814-01 5 140773249 140773249 C T PCDHGA8 Missense_Mutation p.P290L 0.45 tolerated_low_confidence(0.21) benign(0.008) TCGA-F5-6814-01 5 140774388 140774388 G A PCDHGA8 Missense_Mutation p.E670K 0.10 deleterious_low_confidence(0) benign(0.091) TCGA-F5-6814-01 5 140774622 140774622 G A PCDHGA8 Missense_Mutation p.A748T 0.35 deleterious_low_confidence(0.04) benign(0.222) TCGA-F5-6814-01 5 140784780 140784780 C T PCDHGA9 Missense_Mutation p.S754F 0.16 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F5-6814-01 5 140788821 140788821 C A PCDHGB6 Missense_Mutation p.S351Y 0.47 deleterious(0.01) probably_damaging(0.992) TCGA-F5-6814-01 5 140801641 140801641 C T PCDHGA11 Missense_Mutation p.R283W 0.29 tolerated_low_confidence(0.19) benign(0.068) TCGA-F5-6814-01 5 140810726 140810726 C T PCDHGA12 Missense_Mutation p.R134C 0.39 tolerated_low_confidence(0.18) possibly_damaging(0.755) TCGA-F5-6814-01 5 140864924 140864924 C T PCDHGC4 Missense_Mutation p.R62C 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 5 140866764 140866764 A C PCDHGC4 Missense_Mutation p.D675A 0.12 deleterious(0.04) benign(0.334) TCGA-F5-6814-01 5 140869566 140869566 G T PCDHGC5 Missense_Mutation p.E253D 0.31 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 5 141336402 141336402 G T PCDH12 Missense_Mutation p.L339I 0.37 tolerated(0.3) possibly_damaging(0.771) TCGA-F5-6814-01 5 141359786 141359786 G A RNF14 Silent p.R311R 0.56 TCGA-F5-6814-01 5 141524180 141524180 C T NDFIP1 Missense_Mutation p.R203W 0.29 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 141693840 141693840 C T SPRY4 Silent p.T301T 0.45 TCGA-F5-6814-01 5 141974735 141974735 A C FGF1 3'UTR 0.31 TCGA-F5-6814-01 5 142437275 142437275 C T ARHGAP26 Missense_Mutation p.R501W 0.45 deleterious(0.01) probably_damaging(0.962) TCGA-F5-6814-01 5 14291055 14291055 C T TRIO Silent p.I257I 0.57 TCGA-F5-6814-01 5 14304685 14304685 C G TRIO Missense_Mutation p.T495S 0.21 possibly_damaging(0.637) TCGA-F5-6814-01 5 14508111 14508111 C T TRIO Silent p.F2958F 0.41 TCGA-F5-6814-01 5 145144502 145144502 C A PRELID2 3'UTR 0.21 TCGA-F5-6814-01 5 145477724 145477724 C A PLAC8L1 Missense_Mutation p.R84I 0.52 deleterious(0.04) possibly_damaging(0.882) TCGA-F5-6814-01 5 145543883 145543883 A G LARS Missense_Mutation p.M195T 0.26 deleterious(0) benign(0.22) TCGA-F5-6814-01 5 145719717 145719717 G T POU4F3 Missense_Mutation p.A243S 0.09 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 5 146619119 146619119 C T STK32A 5'UTR 0.23 TCGA-F5-6814-01 5 146792231 146792231 G A DPYSL3 Silent p.C301C 0.25 TCGA-F5-6814-01 5 146970977 146970977 C A JAKMIP2 3'UTR 0.42 TCGA-F5-6814-01 5 146991933 146991933 C A JAKMIP2 Missense_Mutation p.R783I 0.46 deleterious(0) probably_damaging(0.983) TCGA-F5-6814-01 5 147553881 147553881 G A SPINK14 Missense_Mutation p.G66S 0.60 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 147821710 147821710 A G FBXO38 Silent p.%3D 0.35 TCGA-F5-6814-01 5 147889053 147889053 T G HTR4 Missense_Mutation p.T348P 0.35 tolerated(0.06) benign(0.013) TCGA-F5-6814-01 5 147889439 147889439 G A HTR4 Missense_Mutation p.A219V 0.42 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 5 148521624 148521624 G A ABLIM3 5'UTR 0.15 TCGA-F5-6814-01 5 148687128 148687128 C T AFAP1L1 Silent p.F233F 0.28 TCGA-F5-6814-01 5 148712266 148712266 T G AFAP1L1 Missense_Mutation p.L662V 0.12 tolerated(0.29) benign(0.003) TCGA-F5-6814-01 5 148730707 148730707 C A GRPEL2 Silent p.L180L 0.44 TCGA-F5-6814-01 5 148745658 148745658 C T PCYOX1L Silent p.V208V 0.22 TCGA-F5-6814-01 5 148748070 148748070 C A PCYOX1L Silent p.L446L 0.47 TCGA-F5-6814-01 5 149279034 149279034 C T PDE6A Silent p.P389P 0.46 TCGA-F5-6814-01 5 149313543 149313543 T C PDE6A Missense_Mutation p.K223E 0.30 deleterious(0.02) benign(0.14) TCGA-F5-6814-01 5 149357395 149357395 G T SLC26A2 Missense_Mutation p.E60D 0.24 tolerated(0.38) benign(0.03) TCGA-F5-6814-01 5 149644546 149644546 A G CAMK2A Missense_Mutation p.C64R 0.36 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6814-01 5 149743715 149743715 T C TCOF1 Silent p.D68D 0.24 TCGA-F5-6814-01 5 149769545 149769545 C T TCOF1 Missense_Mutation p.R1048W 0.46 deleterious(0) possibly_damaging(0.53) TCGA-F5-6814-01 5 150027635 150027635 G A SYNPO Missense_Mutation p.R177H 0.25 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6814-01 5 150029357 150029357 G A SYNPO Missense_Mutation p.R751H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 150158062 150158062 G A AC010441.1 5'UTR 0.21 TCGA-F5-6814-01 5 150274955 150274955 C A ZNF300 3'UTR 0.14 TCGA-F5-6814-01 5 150275011 150275011 C A ZNF300 Missense_Mutation p.R613I 0.34 deleterious(0) possibly_damaging(0.732) TCGA-F5-6814-01 5 150310602 150310602 C A ZNF300P1 RNA 0.40 TCGA-F5-6814-01 5 150406495 150406495 C T GPX3 Silent p.F92F 0.17 TCGA-F5-6814-01 5 150406552 150406552 G T GPX3 Missense_Mutation p.E111D 0.15 tolerated(0.36) benign(0.001) TCGA-F5-6814-01 5 150484851 150484851 C A ANXA6 Missense_Mutation p.K598N 0.10 deleterious(0) probably_damaging(0.933) TCGA-F5-6814-01 5 150490194 150490194 C A ANXA6 Missense_Mutation p.E528D 0.12 tolerated(0.51) benign(0.011) TCGA-F5-6814-01 5 150512689 150512689 G T ANXA6 Silent p.I202I 0.51 TCGA-F5-6814-01 5 150923587 150923587 G T FAT2 Silent p.V2367V 0.09 TCGA-F5-6814-01 5 150923694 150923694 A G FAT2 Missense_Mutation p.S2332P 0.13 possibly_damaging(0.633) TCGA-F5-6814-01 5 150923716 150923716 G T FAT2 Silent p.I2324I 0.52 TCGA-F5-6814-01 5 150925519 150925519 G T FAT2 Silent p.I1723I 0.44 TCGA-F5-6814-01 5 150947567 150947567 C T FAT2 Missense_Mutation p.S309N 0.10 benign(0.097) TCGA-F5-6814-01 5 150948445 150948445 C T FAT2 Silent p.A16A 0.22 TCGA-F5-6814-01 5 151771714 151771714 A C NMUR2 3'UTR 0.35 TCGA-F5-6814-01 5 151771748 151771748 G T NMUR2 3'UTR 0.31 TCGA-F5-6814-01 5 151784660 151784660 T G NMUR2 Missense_Mutation p.E5D 0.28 tolerated(0.23) benign(0.002) TCGA-F5-6814-01 5 153054187 153054187 G A GRIA1 Missense_Mutation p.R286Q 0.32 deleterious(0.05) benign(0.342) TCGA-F5-6814-01 5 153085574 153085574 T G GRIA1 Missense_Mutation p.S600R 0.20 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 153144173 153144173 C A GRIA1 Missense_Mutation p.S678Y 0.39 deleterious(0) possibly_damaging(0.864) TCGA-F5-6814-01 5 153435578 153435578 G T MFAP3 3'UTR 0.42 TCGA-F5-6814-01 5 153436384 153436384 C A MFAP3 3'UTR 0.28 TCGA-F5-6814-01 5 153674389 153674389 G A GALNT10 Missense_Mutation p.R58Q 0.45 tolerated(0.54) benign(0.017) TCGA-F5-6814-01 5 153789196 153789196 C T GALNT10 Silent p.V420V 0.21 TCGA-F5-6814-01 5 153830687 153830687 T G SAP30L Missense_Mutation p.F80V 0.11 tolerated(0.42) benign(0.021) TCGA-F5-6814-01 5 154183304 154183304 A G LARP1 Missense_Mutation p.K736R 0.25 tolerated(0.17) probably_damaging(0.997) TCGA-F5-6814-01 5 154395766 154395766 G T KIF4B Nonsense_Mutation p.E783* 0.16 TCGA-F5-6814-01 5 154396594 154396594 G T KIF4B Missense_Mutation p.D1059Y 0.08 tolerated(0.06) possibly_damaging(0.738) TCGA-F5-6814-01 5 156533738 156533738 C A HAVCR2 Missense_Mutation p.E98D 0.42 tolerated(0.14) benign(0.033) TCGA-F5-6814-01 5 156590586 156590586 A C FAM71B Silent p.A230A 0.54 TCGA-F5-6814-01 5 156590640 156590640 C T FAM71B Silent p.Q212Q 0.13 TCGA-F5-6814-01 5 156635937 156635937 G A ITK Missense_Mutation p.R59Q 0.22 deleterious(0.02) possibly_damaging(0.794) TCGA-F5-6814-01 5 156641326 156641326 G T ITK Missense_Mutation p.K150N 0.31 tolerated(0.39) benign(0.171) TCGA-F5-6814-01 5 156672966 156672966 C A ITK Missense_Mutation p.F530L 0.34 tolerated(0.53) possibly_damaging(0.669) TCGA-F5-6814-01 5 156757768 156757768 T C CYFIP2 Silent p.R699R 0.09 TCGA-F5-6814-01 5 156816394 156816394 C T CYFIP2 Silent p.F1109F 0.28 TCGA-F5-6814-01 5 156917336 156917336 T G ADAM19 Missense_Mutation p.K741T 0.09 tolerated(0.25) benign(0.008) TCGA-F5-6814-01 5 157065391 157065391 C T SOX30 Missense_Mutation p.R576K 0.38 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 5 157075723 157075723 C A SOX30 Missense_Mutation p.K383N 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 157106938 157106938 C T C5orf52 Silent p.L137L 0.18 TCGA-F5-6814-01 5 158601142 158601142 C T RNF145 Missense_Mutation p.A246T 0.37 tolerated(0.25) benign(0.362) TCGA-F5-6814-01 5 159659148 159659148 C T FABP6 Silent p.I86I 0.14 TCGA-F5-6814-01 5 159707686 159707686 G A CCNJL Silent p.F42F 0.19 TCGA-F5-6814-01 5 159821927 159821927 A G C5orf54 Missense_Mutation p.F191L 0.48 deleterious(0.02) probably_damaging(0.994) TCGA-F5-6814-01 5 159832128 159832128 C T SLU7 Silent p.S434S 0.15 TCGA-F5-6814-01 5 159992488 159992488 C T ATP10B Missense_Mutation p.R1453H 0.18 deleterious_low_confidence(0.02) benign(0.072) TCGA-F5-6814-01 5 160047739 160047739 G A ATP10B Silent p.D677D 0.47 TCGA-F5-6814-01 5 16067884 16067884 C T MARCH11 Missense_Mutation p.G302E 0.27 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 5 161116281 161116281 T A GABRA6 Nonsense_Mutation p.C156* 0.39 TCGA-F5-6814-01 5 161128693 161128693 C A GABRA6 Missense_Mutation p.P426T 0.24 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 5 161128884 161128884 A C GABRA6 3'UTR 0.50 TCGA-F5-6814-01 5 161520934 161520934 T G GABRG2 Missense_Mutation p.L70V 0.29 deleterious(0) benign(0.253) TCGA-F5-6814-01 5 161522500 161522500 G A GABRG2 Splice_Site p.X87_splice 0.12 TCGA-F5-6814-01 5 161580124 161580124 G T GABRG2 Missense_Mutation p.R433I 0.38 tolerated(0.24) possibly_damaging(0.559) TCGA-F5-6814-01 5 161580217 161580217 G T GABRG2 Missense_Mutation p.S464I 0.13 deleterious(0.04) possibly_damaging(0.481) TCGA-F5-6814-01 5 162940946 162940946 T G MAT2B Missense_Mutation p.L158V 0.08 tolerated(0.41) benign(0.004) TCGA-F5-6814-01 5 162943574 162943574 G A MAT2B Missense_Mutation p.E193K 0.29 tolerated(0.28) benign(0.182) TCGA-F5-6814-01 5 163063 163063 C T PLEKHG4B Missense_Mutation p.S603F 0.36 tolerated(0.29) benign(0.006) TCGA-F5-6814-01 5 163445 163445 C T PLEKHG4B Silent p.F730F 0.24 TCGA-F5-6814-01 5 164028108 164028108 C T CTC-340A15.2 RNA 0.35 TCGA-F5-6814-01 5 16465220 16465220 C T ZNF622 Silent p.Q185Q 0.21 TCGA-F5-6814-01 5 16701654 16701654 G A MYO10 Silent p.I950I 0.35 TCGA-F5-6814-01 5 167545407 167545407 G A TENM2 Missense_Mutation p.D642N 0.29 tolerated(0.12) probably_damaging(0.932) TCGA-F5-6814-01 5 167627021 167627021 C T TENM2 Silent p.V1105V 0.32 TCGA-F5-6814-01 5 167645245 167645245 C T TENM2 Missense_Mutation p.A1450V 0.45 deleterious(0.02) probably_damaging(0.981) TCGA-F5-6814-01 5 167654908 167654908 C T TENM2 Missense_Mutation p.R1765W 0.43 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 5 167850670 167850670 C A WWC1 Silent p.P469P 0.41 TCGA-F5-6814-01 5 167991059 167991059 C A PANK3 Missense_Mutation p.G216V 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 168112761 168112761 G T SLIT3 Missense_Mutation p.F1162L 0.12 deleterious(0.02) benign(0.115) TCGA-F5-6814-01 5 168180967 168180967 G A SLIT3 Silent p.F577F 0.31 TCGA-F5-6814-01 5 168233552 168233552 G T SLIT3 Silent p.I278I 0.55 TCGA-F5-6814-01 5 169015412 169015412 G T SPDL1 5'UTR 0.39 TCGA-F5-6814-01 5 169021643 169021643 G T SPDL1 Missense_Mutation p.K283N 0.19 deleterious(0.01) possibly_damaging(0.742) TCGA-F5-6814-01 5 169125392 169125392 G T DOCK2 Missense_Mutation p.D332Y 0.09 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 5 169139135 169139135 G A DOCK2 Missense_Mutation p.G523R 0.23 deleterious(0) benign(0.356) TCGA-F5-6814-01 5 169145766 169145766 C A DOCK2 Missense_Mutation p.F746L 0.31 deleterious(0.01) possibly_damaging(0.893) TCGA-F5-6814-01 5 169145788 169145788 T C DOCK2 Missense_Mutation p.F754L 0.28 deleterious(0) benign(0.029) TCGA-F5-6814-01 5 169291298 169291298 C A FAM196B Missense_Mutation p.K529N 0.21 deleterious(0) possibly_damaging(0.802) TCGA-F5-6814-01 5 169308390 169308390 G A FAM196B Missense_Mutation p.T468M 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 169483760 169483760 G T DOCK2 Missense_Mutation p.E1456D 0.24 tolerated(1) benign(0) TCGA-F5-6814-01 5 169494527 169494527 C A DOCK2 Missense_Mutation p.P1494H 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 169810782 169810782 C T KCNMB1 Silent p.K69K 0.60 TCGA-F5-6814-01 5 170160885 170160885 C A KCNIP1 Missense_Mutation p.L207I 0.28 tolerated(1) benign(0.006) TCGA-F5-6814-01 5 170232776 170232776 C T GABRP Missense_Mutation p.R200C 0.20 deleterious(0.05) probably_damaging(0.946) TCGA-F5-6814-01 5 170305111 170305111 A G RANBP17 Missense_Mutation p.E10G 0.20 deleterious(0.01) benign(0.272) TCGA-F5-6814-01 5 171168 171168 T C PLEKHG4B Missense_Mutation p.F891S 0.23 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 5 171520581 171520581 C A STK10 Missense_Mutation p.E463D 0.34 tolerated(0.27) benign(0.033) TCGA-F5-6814-01 5 171766670 171766670 G A SH3PXD2B Missense_Mutation p.S480L 0.26 tolerated(0.57) benign(0.009) TCGA-F5-6814-01 5 171789795 171789795 G A SH3PXD2B Missense_Mutation p.S169L 0.24 deleterious(0) possibly_damaging(0.903) TCGA-F5-6814-01 5 172395521 172395521 G T RPL26L1 Missense_Mutation p.K76N 0.47 deleterious(0.01) probably_damaging(0.927) TCGA-F5-6814-01 5 172517390 172517390 A C CREBRF Missense_Mutation p.N70H 0.13 tolerated_low_confidence(0.08) benign(0.444) TCGA-F5-6814-01 5 172755176 172755176 G A STC2 Silent p.G7G 0.35 TCGA-F5-6814-01 5 173316743 173316743 G A CPEB4 Missense_Mutation p.D3N 0.09 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-F5-6814-01 5 173531271 173531271 G A NSG2 Missense_Mutation p.C85Y 0.36 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 5 173534584 173534584 G A NSG2 3'UTR 0.30 TCGA-F5-6814-01 5 175110353 175110353 C A HRH2 Silent p.V39V 0.11 TCGA-F5-6814-01 5 175722032 175722032 G T SIMC1 Splice_Site p.X44_splice 0.24 TCGA-F5-6814-01 5 175774709 175774709 T G KIAA1191 Missense_Mutation p.K271T 0.24 deleterious(0.02) possibly_damaging(0.798) TCGA-F5-6814-01 5 176002972 176002972 A G CDHR2 Missense_Mutation p.N327S 0.13 deleterious(0.01) probably_damaging(0.989) TCGA-F5-6814-01 5 176069774 176069774 G T EIF4E1B 5'UTR 0.32 TCGA-F5-6814-01 5 176305101 176305101 C T UNC5A Silent p.C614C 0.29 TCGA-F5-6814-01 5 176468188 176468188 C T ZNF346 Silent p.C79C 0.09 TCGA-F5-6814-01 5 176638937 176638937 G T NSD1 Missense_Mutation p.E1179D 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.676) TCGA-F5-6814-01 5 176931756 176931756 G A DOK3 Silent p.F267F 0.38 TCGA-F5-6814-01 5 177580710 177580710 G A NHP2 Missense_Mutation p.P37S 0.16 deleterious(0) probably_damaging(0.918) TCGA-F5-6814-01 5 178140479 178140479 T G ZNF354A Missense_Mutation p.K134Q 0.08 tolerated(0.05) benign(0.197) TCGA-F5-6814-01 5 178152389 178152389 C T ZNF354A Missense_Mutation p.V82I 0.09 tolerated(0.42) benign(0.004) TCGA-F5-6814-01 5 178310453 178310453 G A ZNF354B Missense_Mutation p.A334T 0.17 tolerated(0.23) benign(0.041) TCGA-F5-6814-01 5 178311162 178311162 G T ZNF354B Missense_Mutation p.R570I 0.09 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 5 178358763 178358763 G T ZFP2 Missense_Mutation p.R150I 0.80 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 5 178358847 178358847 G A ZFP2 Missense_Mutation p.R178Q 0.50 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 5 178359267 178359267 G T ZFP2 Missense_Mutation p.R318I 0.11 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 5 178359284 178359284 A C ZFP2 Missense_Mutation p.K324Q 0.56 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 5 178392196 178392196 A C ZNF454 Missense_Mutation p.K264T 0.26 deleterious(0) probably_damaging(0.976) TCGA-F5-6814-01 5 178504103 178504103 T G ZNF354C Missense_Mutation p.H62Q 0.19 tolerated(0.22) benign(0.031) TCGA-F5-6814-01 5 178507002 178507002 C A ZNF354C Silent p.L523L 0.16 TCGA-F5-6814-01 5 178994526 178994526 T C RUFY1 Missense_Mutation p.Y223H 0.22 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 179016574 179016574 T G RUFY1 Missense_Mutation p.S352A 0.12 tolerated(0.35) benign(0.011) TCGA-F5-6814-01 5 179016622 179016622 C T RUFY1 Nonsense_Mutation p.R368* 0.60 TCGA-F5-6814-01 5 179069411 179069411 T G C5orf60 Silent p.R255R 0.64 TCGA-F5-6814-01 5 179070485 179070485 C A C5orf60 Missense_Mutation p.R96I 0.83 deleterious(0) possibly_damaging(0.455) TCGA-F5-6814-01 5 179071894 179071894 A C C5orf60 Missense_Mutation p.F43C 0.24 tolerated(0.21) probably_damaging(0.938) TCGA-F5-6814-01 5 179318572 179318572 C T TBC1D9B Missense_Mutation p.R284Q 0.29 tolerated(0.08) possibly_damaging(0.72) TCGA-F5-6814-01 5 179528520 179528520 G T RASGEF1C Missense_Mutation p.S461Y 0.56 deleterious(0) possibly_damaging(0.519) TCGA-F5-6814-01 5 179674426 179674426 C T MAPK9 Intron 0.21 TCGA-F5-6814-01 5 179674902 179674902 A G MAPK9 Intron 0.20 TCGA-F5-6814-01 5 179977077 179977077 C T CNOT6 Missense_Mutation p.R87C 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 5 180166815 180166815 G T OR2Y1 Missense_Mutation p.L82M 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 180219553 180219553 C T MGAT1 Missense_Mutation p.S140N 0.44 probably_damaging(0.996) TCGA-F5-6814-01 5 180480506 180480506 G T BTNL9 Intron 0.37 TCGA-F5-6814-01 5 192316 192316 C T LRRC14B Silent p.N221N 0.14 TCGA-F5-6814-01 5 19520801 19520801 C A CDH18 Missense_Mutation p.D493Y 0.16 deleterious(0) possibly_damaging(0.873) TCGA-F5-6814-01 5 22078697 22078697 G C CDH12 Missense_Mutation p.T30S 0.34 tolerated(0.97) benign(0.002) TCGA-F5-6814-01 5 23509107 23509107 G T PRDM9 5'UTR 0.40 TCGA-F5-6814-01 5 23509611 23509611 C T PRDM9 Silent p.Y34Y 0.28 TCGA-F5-6814-01 5 24487620 24487620 A C CDH10 3'UTR 0.62 TCGA-F5-6814-01 5 24498596 24498596 A G CDH10 Missense_Mutation p.F476L 0.08 tolerated(0.64) benign(0.077) TCGA-F5-6814-01 5 24511494 24511494 T C CDH10 Missense_Mutation p.D315G 0.14 tolerated(0.56) benign(0.142) TCGA-F5-6814-01 5 24593582 24593582 A C CDH10 Missense_Mutation p.F6L 0.51 tolerated(0.5) benign(0) TCGA-F5-6814-01 5 26902689 26902689 G T CDH9 Missense_Mutation p.F383L 0.27 deleterious(0) probably_damaging(0.952) TCGA-F5-6814-01 5 26915906 26915906 C A CDH9 Nonsense_Mutation p.E119* 0.12 TCGA-F5-6814-01 5 31299587 31299587 T G CDH6 Silent p.A220A 0.19 TCGA-F5-6814-01 5 31313487 31313487 C T CDH6 Missense_Mutation p.S439L 0.27 tolerated(0.19) benign(0.408) TCGA-F5-6814-01 5 31317546 31317546 C A CDH6 Missense_Mutation p.S526Y 0.44 deleterious(0.02) possibly_damaging(0.828) TCGA-F5-6814-01 5 31423029 31423029 C T DROSHA Missense_Mutation p.R1095Q 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 31538481 31538481 C T C5orf22 Silent p.L164L 0.23 TCGA-F5-6814-01 5 31799639 31799639 A G PDZD2 Missense_Mutation p.D95G 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 32087705 32087705 C A PDZD2 Missense_Mutation p.S1384Y 0.44 tolerated(0.34) possibly_damaging(0.51) TCGA-F5-6814-01 5 32090982 32090982 C T PDZD2 Silent p.P2476P 0.33 TCGA-F5-6814-01 5 32390466 32390466 T C ZFR Missense_Mutation p.D686G 0.16 tolerated(0.2) unknown(0) TCGA-F5-6814-01 5 32790402 32790402 G T NPR3 3'UTR 0.24 TCGA-F5-6814-01 5 33458677 33458677 G T TARS Nonsense_Mutation p.E364* 0.50 TCGA-F5-6814-01 5 33462245 33462245 G A TARS Missense_Mutation p.R624Q 0.21 deleterious(0.02) possibly_damaging(0.811) TCGA-F5-6814-01 5 33467054 33467054 C T TARS Nonsense_Mutation p.R696* 0.43 TCGA-F5-6814-01 5 33576500 33576500 G A ADAMTS12 Missense_Mutation p.P1211S 0.27 tolerated(0.36) benign(0.007) TCGA-F5-6814-01 5 33577232 33577232 G A ADAMTS12 Missense_Mutation p.R967C 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 33637760 33637760 G A ADAMTS12 Missense_Mutation p.R604W 0.45 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 33936970 33936970 C T RXFP3 Missense_Mutation p.S42L 0.35 deleterious(0.03) benign(0.264) TCGA-F5-6814-01 5 33984560 33984560 G A SLC45A2 Silent p.F43F 0.60 TCGA-F5-6814-01 5 33989255 33989255 A G AMACR Silent p.I364I 0.19 TCGA-F5-6814-01 5 34020772 34020772 C G C1QTNF3 Missense_Mutation p.W292C 0.14 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 34028980 34028980 G T C1QTNF3 Missense_Mutation p.F193L 0.37 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 5 34824376 34824376 C T RAI14 Missense_Mutation p.S813F 0.11 deleterious(0.01) possibly_damaging(0.549) TCGA-F5-6814-01 5 34840821 34840821 C T TTC23L Silent p.I15I 0.27 TCGA-F5-6814-01 5 34915905 34915905 G T BRIX1 Missense_Mutation p.R21I 0.27 tolerated(0.08) benign(0.008) TCGA-F5-6814-01 5 34919985 34919985 C T BRIX1 Silent p.N104N 0.15 TCGA-F5-6814-01 5 34924995 34924995 T G BRIX1 Missense_Mutation p.F236C 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 5 35039578 35039578 C A AGXT2 Missense_Mutation p.K71N 0.47 deleterious(0.05) benign(0.008) TCGA-F5-6814-01 5 35089749 35089749 A C PRLR 5'UTR 0.18 TCGA-F5-6814-01 5 35763648 35763648 C A SPEF2 Silent p.S1215S 0.35 TCGA-F5-6814-01 5 35774118 35774118 T G SPEF2 Missense_Mutation p.F1358C 0.30 tolerated(0.18) benign(0.01) TCGA-F5-6814-01 5 35793302 35793302 C T SPEF2 Silent p.F1532F 0.34 TCGA-F5-6814-01 5 35873667 35873667 T C IL7R Missense_Mutation p.I208T 0.15 tolerated(0.28) probably_damaging(0.932) TCGA-F5-6814-01 5 35904569 35904569 C T CAPSL 3'UTR 0.38 TCGA-F5-6814-01 5 35910084 35910084 G A CAPSL Missense_Mutation p.R137C 0.24 deleterious(0) probably_damaging(0.941) TCGA-F5-6814-01 5 35954412 35954412 G T UGT3A1 Silent p.V488V 0.44 TCGA-F5-6814-01 5 3599626 3599626 G T IRX1 Missense_Mutation p.E188D 0.22 deleterious(0) possibly_damaging(0.899) TCGA-F5-6814-01 5 36039704 36039704 T C UGT3A2 Missense_Mutation p.N317S 0.44 tolerated(0.05) probably_damaging(0.971) TCGA-F5-6814-01 5 36122514 36122514 G T LMBRD2 Missense_Mutation p.L330I 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-F5-6814-01 5 36168422 36168422 C T SKP2 Missense_Mutation p.R182C 0.32 tolerated(0.05) possibly_damaging(0.861) TCGA-F5-6814-01 5 36197740 36197740 G A NADK2 Missense_Mutation p.L365F 0.27 deleterious(0.02) benign(0.029) TCGA-F5-6814-01 5 36249499 36249499 C A RANBP3L 3'UTR 0.62 TCGA-F5-6814-01 5 36265140 36265140 C T RANBP3L Missense_Mutation p.R159Q 0.15 tolerated(1) benign(0) TCGA-F5-6814-01 5 37020594 37020594 C T NIPBL Nonsense_Mutation p.R1682* 0.50 TCGA-F5-6814-01 5 37045681 37045681 T G NIPBL Missense_Mutation p.D2160E 0.20 tolerated(1) benign(0.002) TCGA-F5-6814-01 5 37183082 37183082 G T C5orf42 Missense_Mutation p.P1734H 0.10 deleterious(0) probably_damaging(0.957) TCGA-F5-6814-01 5 37183624 37183624 G T C5orf42 Missense_Mutation p.F1553L 0.49 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 37187855 37187855 C A C5orf42 Nonsense_Mutation p.E1301* 0.15 TCGA-F5-6814-01 5 37196094 37196094 C T C5orf42 Missense_Mutation p.R1226Q 0.31 deleterious(0) possibly_damaging(0.843) TCGA-F5-6814-01 5 37318119 37318119 A G NUP155 Missense_Mutation p.M759T 0.36 tolerated(0.26) benign(0.016) TCGA-F5-6814-01 5 37605188 37605188 G T WDR70 Nonsense_Mutation p.E314* 0.32 TCGA-F5-6814-01 5 37815964 37815964 A C GDNF Missense_Mutation p.F159C 0.52 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 37816206 37816206 G A GDNF Silent p.F78F 0.61 TCGA-F5-6814-01 5 38407152 38407152 C A EGFLAM Missense_Mutation p.L351I 0.24 tolerated(0.57) benign(0.002) TCGA-F5-6814-01 5 38427153 38427153 C A EGFLAM Missense_Mutation p.S618Y 0.36 deleterious(0.03) probably_damaging(0.928) TCGA-F5-6814-01 5 38464084 38464084 A G EGFLAM Missense_Mutation p.K1017R 0.19 deleterious(0.04) benign(0.145) TCGA-F5-6814-01 5 38489331 38489331 T G LIFR Silent p.P728P 0.20 TCGA-F5-6814-01 5 38496522 38496522 G A LIFR Missense_Mutation p.S616L 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 38506609 38506609 C A LIFR Nonsense_Mutation p.E373* 0.31 TCGA-F5-6814-01 5 38506684 38506684 C A LIFR Nonsense_Mutation p.E348* 0.22 TCGA-F5-6814-01 5 38918962 38918962 C A OSMR Silent p.A461A 0.18 TCGA-F5-6814-01 5 38921760 38921760 C A OSMR Missense_Mutation p.F543L 0.11 tolerated(0.19) benign(0.152) TCGA-F5-6814-01 5 38921886 38921886 C A OSMR Silent p.V585V 0.25 TCGA-F5-6814-01 5 38924562 38924562 A G OSMR Missense_Mutation p.T637A 0.09 tolerated(0.1) benign(0.065) TCGA-F5-6814-01 5 38947528 38947528 T C RICTOR Silent p.L1384L 0.17 TCGA-F5-6814-01 5 38950561 38950561 C T RICTOR Missense_Mutation p.R1130Q 0.31 tolerated(0.06) probably_damaging(0.925) TCGA-F5-6814-01 5 38953643 38953643 C A RICTOR Nonsense_Mutation p.E904* 0.39 TCGA-F5-6814-01 5 38955713 38955713 G A RICTOR Missense_Mutation p.R865C 0.56 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 38960627 38960627 C T RICTOR Missense_Mutation p.R575Q 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 5 38963006 38963006 C T RICTOR Missense_Mutation p.R513Q 0.46 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6814-01 5 39137722 39137722 C A FYB Nonsense_Mutation p.E509* 0.25 TCGA-F5-6814-01 5 39202037 39202037 C T FYB Silent p.P352P 0.34 TCGA-F5-6814-01 5 39202507 39202507 C T FYB Missense_Mutation p.D196N 0.47 deleterious(0.01) possibly_damaging(0.735) TCGA-F5-6814-01 5 40716593 40716593 C T TTC33 Missense_Mutation p.R148Q 0.38 deleterious(0.01) probably_damaging(0.976) TCGA-F5-6814-01 5 40841588 40841588 C T CARD6 Missense_Mutation p.S35F 0.17 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 5 40852984 40852984 G T CARD6 Missense_Mutation p.R517I 0.24 tolerated(0.13) benign(0.003) TCGA-F5-6814-01 5 40854550 40854550 G A CARD6 3'UTR 0.61 TCGA-F5-6814-01 5 40931225 40931225 G T C7 Missense_Mutation p.G41V 0.09 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 5 40958146 40958146 A G C7 Silent p.L424L 0.59 TCGA-F5-6814-01 5 41033202 41033202 C A MROH2B Missense_Mutation p.D768Y 0.37 deleterious(0.01) possibly_damaging(0.601) TCGA-F5-6814-01 5 41154059 41154059 T C C6 Missense_Mutation p.I715V 0.17 tolerated(0.1) benign(0.094) TCGA-F5-6814-01 5 41159280 41159280 C T C6 Missense_Mutation p.R587Q 0.50 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 41181609 41181609 G T C6 Missense_Mutation p.S260Y 0.48 deleterious(0) benign(0.112) TCGA-F5-6814-01 5 41382124 41382124 G T PLCXD3 Missense_Mutation p.L206I 0.22 tolerated(0.1) possibly_damaging(0.574) TCGA-F5-6814-01 5 41794275 41794275 A C OXCT1 Intron 0.15 TCGA-F5-6814-01 5 41941386 41941386 C A FBXO4 3'UTR 0.23 TCGA-F5-6814-01 5 42695124 42695124 T G GHR Silent p.P124P 0.19 TCGA-F5-6814-01 5 42711460 42711460 T G GHR Missense_Mutation p.F257C 0.40 tolerated(0.13) possibly_damaging(0.535) TCGA-F5-6814-01 5 42799927 42799927 C T CCDC152 3'UTR 0.52 TCGA-F5-6814-01 5 43174726 43174726 C A ZNF131 Missense_Mutation p.L421I 0.50 tolerated(0.62) benign(0.36) TCGA-F5-6814-01 5 43246101 43246101 G A NIM1K Missense_Mutation p.R75Q 0.34 tolerated(0.15) possibly_damaging(0.473) TCGA-F5-6814-01 5 43280850 43280850 T C NIM1K 3'UTR 0.19 TCGA-F5-6814-01 5 434619 434619 G C AHRR Silent p.G610G 0.48 TCGA-F5-6814-01 5 43502496 43502496 G T C5orf34 Missense_Mutation p.S377Y 0.25 tolerated(0.33) benign(0.022) TCGA-F5-6814-01 5 43535681 43535681 A C PAIP1 Missense_Mutation p.I345S 0.47 deleterious(0) benign(0.444) TCGA-F5-6814-01 5 43644410 43644410 G T NNT Nonsense_Mutation p.E361* 0.40 TCGA-F5-6814-01 5 44809327 44809327 T G MRPS30 Missense_Mutation p.F88C 0.08 tolerated(0.14) probably_damaging(0.935) TCGA-F5-6814-01 5 44815076 44815076 A G MRPS30 Silent p.G364G 0.31 TCGA-F5-6814-01 5 45262908 45262908 C A HCN1 Missense_Mutation p.K596N 0.53 deleterious(0.01) benign(0.397) TCGA-F5-6814-01 5 45303818 45303818 A C HCN1 Missense_Mutation p.Y501D 0.41 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 5 45645430 45645430 A C HCN1 Missense_Mutation p.F236V 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-F5-6814-01 5 50057703 50057703 G A PARP8 Missense_Mutation p.D132N 0.25 deleterious(0) possibly_damaging(0.476) TCGA-F5-6814-01 5 50118228 50118228 G T PARP8 Missense_Mutation p.M618I 0.33 tolerated(0.07) benign(0.016) TCGA-F5-6814-01 5 50122632 50122632 A G PARP8 Missense_Mutation p.N658D 0.38 tolerated(0.17) benign(0.003) TCGA-F5-6814-01 5 50137855 50137855 C A PARP8 Missense_Mutation p.H840N 0.41 tolerated(0.07) benign(0.005) TCGA-F5-6814-01 5 50680415 50680415 G T ISL1 Missense_Mutation p.Q23H 0.35 deleterious(0.03) benign(0.071) TCGA-F5-6814-01 5 50680552 50680552 G T ISL1 Missense_Mutation p.R69I 0.36 deleterious(0.02) possibly_damaging(0.739) TCGA-F5-6814-01 5 50683378 50683378 C T ISL1 Silent p.F91F 0.35 TCGA-F5-6814-01 5 50687229 50687229 A G ISL1 Missense_Mutation p.D296G 0.21 deleterious(0.04) possibly_damaging(0.479) TCGA-F5-6814-01 5 5186243 5186243 T C ADAMTS16 Missense_Mutation p.L281P 0.08 tolerated(0.25) benign(0.022) TCGA-F5-6814-01 5 5200267 5200267 G T ADAMTS16 Nonsense_Mutation p.E446* 0.41 TCGA-F5-6814-01 5 5209320 5209320 C T ADAMTS16 Silent p.F522F 0.37 TCGA-F5-6814-01 5 52189598 52189598 C A ITGA1 Missense_Mutation p.F339L 0.24 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 5 52229817 52229817 C A ITGA1 Silent p.I985I 0.36 TCGA-F5-6814-01 5 52233247 52233247 C A ITGA1 Missense_Mutation p.S994Y 0.21 tolerated(1) benign(0.003) TCGA-F5-6814-01 5 52248367 52248367 C A ITGA1 3'UTR 0.40 TCGA-F5-6814-01 5 52285280 52285280 T C ITGA2 5'UTR 0.15 TCGA-F5-6814-01 5 5235136 5235136 T C ADAMTS16 Silent p.H620H 0.12 TCGA-F5-6814-01 5 52351403 52351403 G A ITGA2 Missense_Mutation p.R272Q 0.17 tolerated(0.23) benign(0.001) TCGA-F5-6814-01 5 52374634 52374634 C T ITGA2 Missense_Mutation p.S953L 0.34 tolerated(0.1) benign(0.009) TCGA-F5-6814-01 5 52385812 52385812 G A ITGA2 Missense_Mutation p.E1129K 0.32 tolerated(0.18) possibly_damaging(0.743) TCGA-F5-6814-01 5 52776673 52776673 C T FST Missense_Mutation p.L18F 0.41 tolerated(0.21) benign(0.002) TCGA-F5-6814-01 5 52779947 52779947 A G FST Missense_Mutation p.D182G 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 52781858 52781858 T G FST Missense_Mutation p.W344G 0.17 deleterious_low_confidence(0) benign(0.198) TCGA-F5-6814-01 5 53751627 53751627 A C HSPB3 Missense_Mutation p.K3T 0.24 tolerated_low_confidence(0.09) benign(0.115) TCGA-F5-6814-01 5 54404089 54404089 C A GZMA Missense_Mutation p.T165N 0.23 deleterious(0.01) possibly_damaging(0.754) TCGA-F5-6814-01 5 54436235 54436235 T C CDC20B Missense_Mutation p.K163E 0.17 deleterious(0.01) possibly_damaging(0.642) TCGA-F5-6814-01 5 5463211 5463211 C A KIAA0947 Missense_Mutation p.S1255Y 0.29 deleterious(0) probably_damaging(0.977) TCGA-F5-6814-01 5 5464022 5464022 C A KIAA0947 Silent p.I1525I 0.36 TCGA-F5-6814-01 5 54696208 54696208 A C SKIV2L2 Missense_Mutation p.N814H 0.44 tolerated(0.11) possibly_damaging(0.608) TCGA-F5-6814-01 5 54721148 54721148 C T PPAP2A Silent p.S248S 0.14 TCGA-F5-6814-01 5 5486894 5486894 C T KIAA0947 Missense_Mutation p.S2194L 0.10 deleterious(0) possibly_damaging(0.876) TCGA-F5-6814-01 5 55056052 55056052 G T DDX4 Missense_Mutation p.R51I 0.16 tolerated_low_confidence(0.06) benign(0.081) TCGA-F5-6814-01 5 55059078 55059078 G T DDX4 Missense_Mutation p.R94I 0.08 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-F5-6814-01 5 55088468 55088468 G A DDX4 Splice_Site p.X435_splice 0.41 TCGA-F5-6814-01 5 55112502 55112502 A C DDX4 3'UTR 0.65 TCGA-F5-6814-01 5 55112507 55112507 A C DDX4 3'UTR 0.63 TCGA-F5-6814-01 5 55192243 55192243 C T IL31RA Missense_Mutation p.R280W 0.07 tolerated(0.24) benign(0.013) TCGA-F5-6814-01 5 55253108 55253108 C A IL6ST Missense_Mutation p.A329S 0.09 tolerated(0.23) benign(0.003) TCGA-F5-6814-01 5 56233410 56233410 A G MIER3 Missense_Mutation p.L144S 0.28 tolerated(1) possibly_damaging(0.826) TCGA-F5-6814-01 5 56778055 56778055 G A ACTBL2 Silent p.V160V 0.41 TCGA-F5-6814-01 5 57752839 57752839 G T PLK2 Missense_Mutation p.F363L 0.28 tolerated(1) probably_damaging(0.965) TCGA-F5-6814-01 5 57755751 57755751 G A PLK2 Silent p.A12A 0.52 TCGA-F5-6814-01 5 58120888 58120888 C A RAB3C Missense_Mutation p.S132Y 0.31 deleterious(0) possibly_damaging(0.9) TCGA-F5-6814-01 5 60768536 60768536 A G ZSWIM6 Silent p.E235E 0.31 TCGA-F5-6814-01 5 60834769 60834769 T C ZSWIM6 Missense_Mutation p.L837P 0.29 deleterious(0) probably_damaging(0.909) TCGA-F5-6814-01 5 61875618 61875618 A C LRRC70 Missense_Mutation p.N118T 0.45 deleterious(0) probably_damaging(0.911) TCGA-F5-6814-01 5 61876165 61876165 G T LRRC70 Missense_Mutation p.K300N 0.38 tolerated(0.97) benign(0.001) TCGA-F5-6814-01 5 63626215 63626215 G T RNF180 Missense_Mutation p.A521S 0.51 tolerated(0.48) benign(0) TCGA-F5-6814-01 5 63665704 63665704 T G RNF180 3'UTR 0.09 TCGA-F5-6814-01 5 64064994 64064994 G A CWC27 Silent p.Q7Q 0.29 TCGA-F5-6814-01 5 64079746 64079746 G T CWC27 Missense_Mutation p.Q112H 0.28 deleterious(0) probably_damaging(0.913) TCGA-F5-6814-01 5 64847391 64847391 T G CENPK Missense_Mutation p.T81P 0.31 deleterious(0.01) benign(0.131) TCGA-F5-6814-01 5 64890396 64890396 C T TRIM23 Silent p.T499T 0.25 TCGA-F5-6814-01 5 64892330 64892330 T G TRIM23 Missense_Mutation p.K446N 0.23 tolerated(0.06) benign(0.11) TCGA-F5-6814-01 5 64966085 64966085 T G SGTB Missense_Mutation p.E301D 0.16 tolerated_low_confidence(0.38) probably_damaging(0.996) TCGA-F5-6814-01 5 65322195 65322195 G T ERBB2IP Missense_Mutation p.E362D 0.24 tolerated(0.44) probably_damaging(0.999) TCGA-F5-6814-01 5 65372768 65372768 A C ERBB2IP Missense_Mutation p.K1381N 0.06 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 5 65473373 65473373 G T SREK1 Nonsense_Mutation p.E538* 0.48 TCGA-F5-6814-01 5 66426054 66426054 C T MAST4 Missense_Mutation p.R588W 0.35 probably_damaging(1) TCGA-F5-6814-01 5 66426117 66426117 C T MAST4 Nonsense_Mutation p.R609* 0.11 TCGA-F5-6814-01 5 66460925 66460925 C T MAST4 Missense_Mutation p.S1973L 0.35 benign(0.004) TCGA-F5-6814-01 5 6652030 6652030 C T SRD5A1 Silent p.F123F 0.08 TCGA-F5-6814-01 5 67588951 67588951 C T PIK3R1 Nonsense_Mutation p.R348* 0.78 TCGA-F5-6814-01 5 68498787 68498787 G T CENPH Missense_Mutation p.K159N 0.24 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 68602670 68602670 C A CCDC125 Missense_Mutation p.E197D 0.12 deleterious(0.04) probably_damaging(0.971) TCGA-F5-6814-01 5 68616241 68616241 C A CCDC125 Nonsense_Mutation p.E43* 0.08 TCGA-F5-6814-01 5 68661285 68661285 C A TAF9 Missense_Mutation p.D94Y 0.26 deleterious(0) possibly_damaging(0.781) TCGA-F5-6814-01 5 68715473 68715473 G T MARVELD2 Missense_Mutation p.K87N 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 69372423 69372423 A C SMN2 Intron 0.73 TCGA-F5-6814-01 5 70751858 70751858 G T BDP1 Missense_Mutation p.D52Y 0.47 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 5 70782328 70782328 G A BDP1 Missense_Mutation p.D363N 0.16 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 5 70782334 70782334 G A BDP1 Missense_Mutation p.D365N 0.26 tolerated(0.17) probably_damaging(0.999) TCGA-F5-6814-01 5 70785463 70785463 A G BDP1 Silent p.E482E 0.12 TCGA-F5-6814-01 5 70798550 70798550 C A BDP1 Missense_Mutation p.L725I 0.31 tolerated(0.25) benign(0.026) TCGA-F5-6814-01 5 70805327 70805327 A G BDP1 Missense_Mutation p.Q803R 0.09 tolerated(0.45) benign(0.382) TCGA-F5-6814-01 5 70805514 70805514 T G BDP1 Missense_Mutation p.I865M 0.11 tolerated(0.12) possibly_damaging(0.532) TCGA-F5-6814-01 5 70806348 70806348 A C BDP1 Missense_Mutation p.K1143N 0.20 tolerated(0.06) benign(0.035) TCGA-F5-6814-01 5 70808120 70808120 G T BDP1 Missense_Mutation p.R1371I 0.31 tolerated(0.22) benign(0.442) TCGA-F5-6814-01 5 70888813 70888813 A C MCCC2 Missense_Mutation p.K64Q 0.12 tolerated_low_confidence(0.3) benign(0.004) TCGA-F5-6814-01 5 71490144 71490144 A G MAP1B Missense_Mutation p.N321S 0.12 unknown(0) TCGA-F5-6814-01 5 71491368 71491368 A C MAP1B Missense_Mutation p.K729T 0.11 unknown(0) TCGA-F5-6814-01 5 71492257 71492257 A C MAP1B Missense_Mutation p.K1025N 0.52 possibly_damaging(0.738) TCGA-F5-6814-01 5 71493422 71493422 C A MAP1B Missense_Mutation p.L1414I 0.51 possibly_damaging(0.855) TCGA-F5-6814-01 5 71493725 71493725 G T MAP1B Nonsense_Mutation p.E1515* 0.09 TCGA-F5-6814-01 5 71494406 71494406 G A MAP1B Missense_Mutation p.A1742T 0.36 benign(0.146) TCGA-F5-6814-01 5 71494903 71494903 G T MAP1B Missense_Mutation p.E1907D 0.41 possibly_damaging(0.833) TCGA-F5-6814-01 5 71516850 71516850 C T MRPS27 Silent p.Q377Q 0.10 TCGA-F5-6814-01 5 71516894 71516894 T G MRPS27 Missense_Mutation p.K363Q 0.23 tolerated(0.53) benign(0.018) TCGA-F5-6814-01 5 71529956 71529956 T G MRPS27 Missense_Mutation p.E155D 0.33 tolerated(0.24) possibly_damaging(0.856) TCGA-F5-6814-01 5 71609979 71609979 C A MRPS27 Missense_Mutation p.R27I 0.13 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 71654082 71654082 T G PTCD2 Missense_Mutation p.F332C 0.44 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 5 71739633 71739633 C A ZNF366 Nonsense_Mutation p.E729* 0.29 TCGA-F5-6814-01 5 72157668 72157668 A G TNPO1 Missense_Mutation p.E130G 0.27 tolerated(0.56) benign(0.001) TCGA-F5-6814-01 5 72311462 72311462 G A FCHO2 Missense_Mutation p.D204N 0.28 tolerated(0.05) benign(0.033) TCGA-F5-6814-01 5 72383979 72383979 C A FCHO2 3'UTR 0.29 TCGA-F5-6814-01 5 72469210 72469210 T C TMEM174 Missense_Mutation p.L47P 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 5 72865421 72865421 A C UTP15 Missense_Mutation p.E156D 0.15 tolerated(0.09) benign(0.186) TCGA-F5-6814-01 5 73930802 73930802 G T ENC1 Missense_Mutation p.F503L 0.35 tolerated(0.16) benign(0.287) TCGA-F5-6814-01 5 74021811 74021811 A C GFM2 Missense_Mutation p.S623A 0.09 tolerated(0.51) benign(0.027) TCGA-F5-6814-01 5 74324606 74324606 G T GCNT4 Silent p.I419I 0.38 TCGA-F5-6814-01 5 74324729 74324729 G T GCNT4 Missense_Mutation p.F378L 0.36 tolerated(1) benign(0.002) TCGA-F5-6814-01 5 74325905 74325905 G T GCNT4 5'UTR 0.11 TCGA-F5-6814-01 5 74326134 74326134 A G GCNT4 5'UTR 0.33 TCGA-F5-6814-01 5 74326433 74326433 A C GCNT4 5'UTR 0.37 TCGA-F5-6814-01 5 74640141 74640141 G T HMGCR Nonsense_Mutation p.E117* 0.21 TCGA-F5-6814-01 5 74754932 74754932 T C COL4A3BP Silent p.P230P 0.32 TCGA-F5-6814-01 5 74892054 74892054 G A POLK Silent p.R512R 0.37 TCGA-F5-6814-01 5 74893841 74893841 T G POLK Nonstop_Mutation p.*871Eext*11 0.08 TCGA-F5-6814-01 5 74998536 74998536 G T POC5 Missense_Mutation p.S136Y 0.30 tolerated(0.11) probably_damaging(0.983) TCGA-F5-6814-01 5 75427717 75427717 C T SV2C Missense_Mutation p.R48W 0.32 deleterious_low_confidence(0) possibly_damaging(0.808) TCGA-F5-6814-01 5 75427926 75427926 C T SV2C Silent p.Y117Y 0.23 TCGA-F5-6814-01 5 75927707 75927707 A C IQGAP2 Missense_Mutation p.N546H 0.39 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 5 75954316 75954316 C T IQGAP2 Missense_Mutation p.R785C 0.35 tolerated(0.07) probably_damaging(0.932) TCGA-F5-6814-01 5 75993969 75993969 G T IQGAP2 Missense_Mutation p.R1455I 0.53 tolerated(0.24) benign(0.11) TCGA-F5-6814-01 5 75997035 75997035 A G IQGAP2 Missense_Mutation p.N1501S 0.09 tolerated(0.69) benign(0.079) TCGA-F5-6814-01 5 76028839 76028839 C T F2R Silent p.L263L 0.24 TCGA-F5-6814-01 5 76128951 76128951 G A F2RL1 Silent p.R173R 0.14 TCGA-F5-6814-01 5 76173562 76173562 G A S100Z Missense_Mutation p.E69K 0.40 tolerated(0.56) benign(0.051) TCGA-F5-6814-01 5 76331437 76331437 G T AGGF1 Missense_Mutation p.D129Y 0.22 deleterious(0.02) possibly_damaging(0.526) TCGA-F5-6814-01 5 76708051 76708051 C T PDE8B Missense_Mutation p.T568M 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 76734154 76734154 G A WDR41 Silent p.Y305Y 0.48 TCGA-F5-6814-01 5 76759010 76759010 C A WDR41 Missense_Mutation p.K86N 0.28 tolerated(0.06) probably_damaging(0.981) TCGA-F5-6814-01 5 76788015 76788015 C T WDR41 Missense_Mutation p.E11K 0.52 tolerated(0.15) benign(0.297) TCGA-F5-6814-01 5 76986993 76986993 C A TBCA 3'UTR 0.45 TCGA-F5-6814-01 5 77590400 77590400 A G AP3B1 Missense_Mutation p.S2P 0.25 deleterious(0.01) possibly_damaging(0.55) TCGA-F5-6814-01 5 7784562 7784562 G T ADCY2 Missense_Mutation p.Q823H 0.12 deleterious(0) benign(0.179) TCGA-F5-6814-01 5 7820772 7820772 G A ADCY2 Missense_Mutation p.M1031I 0.50 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 78325767 78325767 G T DMGDH Missense_Mutation p.L592I 0.25 tolerated(0.08) benign(0.038) TCGA-F5-6814-01 5 78347293 78347293 G A DMGDH Missense_Mutation p.P188S 0.29 deleterious(0) possibly_damaging(0.824) TCGA-F5-6814-01 5 78573832 78573832 G A JMY Missense_Mutation p.E378K 0.21 tolerated(0.11) possibly_damaging(0.866) TCGA-F5-6814-01 5 7867047 7867047 G T FASTKD3 Missense_Mutation p.L384I 0.38 deleterious(0.01) possibly_damaging(0.792) TCGA-F5-6814-01 5 7867115 7867115 G A FASTKD3 Missense_Mutation p.A361V 0.43 tolerated(0.14) benign(0.11) TCGA-F5-6814-01 5 78671819 78671819 A C HOMER1 3'UTR 0.40 TCGA-F5-6814-01 5 78671900 78671900 G T HOMER1 Missense_Mutation p.L333M 0.45 deleterious(0.05) probably_damaging(0.998) TCGA-F5-6814-01 5 7867231 7867231 G A FASTKD3 Silent p.V322V 0.34 TCGA-F5-6814-01 5 7868038 7868038 G A FASTKD3 Silent p.F53F 0.43 TCGA-F5-6814-01 5 78752798 78752798 C A HOMER1 Missense_Mutation p.D17Y 0.09 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 7878366 7878366 A C MTRR Missense_Mutation p.Q264H 0.17 deleterious(0.02) benign(0.018) TCGA-F5-6814-01 5 7889332 7889332 T C MTRR Missense_Mutation p.L451S 0.23 deleterious(0.01) probably_damaging(0.941) TCGA-F5-6814-01 5 7891518 7891518 C T MTRR Missense_Mutation p.S481L 0.43 deleterious(0) possibly_damaging(0.892) TCGA-F5-6814-01 5 7892860 7892860 G A MTRR Missense_Mutation p.G491E 0.38 deleterious(0.04) probably_damaging(0.976) TCGA-F5-6814-01 5 78977877 78977877 T G PAPD4 Missense_Mutation p.F458C 0.42 deleterious(0) probably_damaging(0.959) TCGA-F5-6814-01 5 78981225 78981225 G T PAPD4 3'UTR 0.50 TCGA-F5-6814-01 5 7900198 7900198 A C MTRR 3'UTR 0.29 TCGA-F5-6814-01 5 79024935 79024935 C A CMYA5 Missense_Mutation p.S116Y 0.74 possibly_damaging(0.831) TCGA-F5-6814-01 5 79025300 79025300 G T CMYA5 Nonsense_Mutation p.E238* 0.11 TCGA-F5-6814-01 5 79025605 79025605 G A CMYA5 Silent p.E339E 0.39 TCGA-F5-6814-01 5 79027649 79027649 C A CMYA5 Missense_Mutation p.L1021I 0.38 benign(0.001) TCGA-F5-6814-01 5 79029638 79029638 G T CMYA5 Nonsense_Mutation p.E1684* 0.33 TCGA-F5-6814-01 5 79031385 79031385 C A CMYA5 Missense_Mutation p.S2266Y 0.36 benign(0.198) TCGA-F5-6814-01 5 79032515 79032515 C T CMYA5 Missense_Mutation p.R2643C 0.34 possibly_damaging(0.513) TCGA-F5-6814-01 5 79048563 79048563 G A CMYA5 Missense_Mutation p.E3686K 0.33 possibly_damaging(0.669) TCGA-F5-6814-01 5 79054615 79054615 C A CMYA5 Missense_Mutation p.S3717Y 0.29 probably_damaging(0.998) TCGA-F5-6814-01 5 79054716 79054716 G T CMYA5 Nonsense_Mutation p.E3751* 0.42 TCGA-F5-6814-01 5 79095526 79095526 A C CMYA5 3'UTR 0.36 TCGA-F5-6814-01 5 79285068 79285068 C A MTX3 Splice_Site p.X16_splice 0.15 TCGA-F5-6814-01 5 79366207 79366207 C T THBS4 Missense_Mutation p.P476S 0.24 tolerated(0.29) benign(0.008) TCGA-F5-6814-01 5 79616257 79616257 G T SPZ1 Nonsense_Mutation p.E75* 0.29 TCGA-F5-6814-01 5 79729953 79729953 A C ZFYVE16 5'UTR 0.30 TCGA-F5-6814-01 5 79734100 79734100 A C ZFYVE16 Missense_Mutation p.E532D 0.44 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 5 79854371 79854371 C A ANKRD34B Nonsense_Mutation p.E490* 0.37 TCGA-F5-6814-01 5 79855371 79855371 C T ANKRD34B Silent p.L156L 0.32 TCGA-F5-6814-01 5 79960969 79960969 G T MSH3 Missense_Mutation p.K122N 0.30 deleterious_low_confidence(0) possibly_damaging(0.611) TCGA-F5-6814-01 5 80169050 80169050 T G MSH3 Missense_Mutation p.I1082M 0.35 deleterious(0) probably_damaging(0.976) TCGA-F5-6814-01 5 80375949 80375949 C A RASGRF2 Silent p.I299I 0.29 TCGA-F5-6814-01 5 80476102 80476102 T C RASGRF2 Splice_Site p.X931_splice 0.25 TCGA-F5-6814-01 5 80497155 80497155 G A RASGRF2 Missense_Mutation p.E934K 0.11 deleterious(0.03) benign(0.06) TCGA-F5-6814-01 5 80600744 80600744 A C ZCCHC9 Silent p.A56A 0.11 TCGA-F5-6814-01 5 80626184 80626184 T C ACOT12 3'UTR 0.14 TCGA-F5-6814-01 5 80716259 80716259 C T SSBP2 3'UTR 0.33 TCGA-F5-6814-01 5 81283441 81283441 G T ATG10 Nonsense_Mutation p.E18* 0.36 TCGA-F5-6814-01 5 81571753 81571753 T G RPS23 3'UTR 0.30 TCGA-F5-6814-01 5 82491646 82491646 G T XRCC4 Nonsense_Mutation p.E125* 0.38 TCGA-F5-6814-01 5 82786199 82786199 T C VCAN Missense_Mutation p.V118A 0.15 tolerated(0.14) benign(0.105) TCGA-F5-6814-01 5 82815418 82815418 G T VCAN Missense_Mutation p.K431N 0.19 tolerated(0.22) benign(0.347) TCGA-F5-6814-01 5 82833582 82833582 T C VCAN Missense_Mutation p.V1587A 0.23 tolerated(0.24) benign(0.05) TCGA-F5-6814-01 5 82833927 82833927 C T VCAN Missense_Mutation p.P1702L 0.40 deleterious(0.03) benign(0.059) TCGA-F5-6814-01 5 82834139 82834139 T G VCAN Missense_Mutation p.F1773V 0.15 tolerated(0.8) benign(0.01) TCGA-F5-6814-01 5 82834401 82834401 T G VCAN Missense_Mutation p.I1860S 0.37 tolerated(0.15) benign(0.035) TCGA-F5-6814-01 5 82834809 82834809 C A VCAN Missense_Mutation p.T1996N 0.32 deleterious(0.03) possibly_damaging(0.575) TCGA-F5-6814-01 5 82835828 82835828 T G VCAN Missense_Mutation p.L2336V 0.18 tolerated(0.38) benign(0.051) TCGA-F5-6814-01 5 82836003 82836003 C T VCAN Missense_Mutation p.T2394I 0.48 tolerated(0.08) benign(0.032) TCGA-F5-6814-01 5 82843819 82843819 C T VCAN Missense_Mutation p.R3137C 0.28 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 5 82876150 82876150 C A VCAN Missense_Mutation p.S3363Y 0.23 deleterious(0) benign(0.02) TCGA-F5-6814-01 5 82948551 82948551 G A HAPLN1 Nonsense_Mutation p.R65* 0.47 TCGA-F5-6814-01 5 83433156 83433156 T G EDIL3 Missense_Mutation p.E124D 0.44 tolerated(0.61) possibly_damaging(0.811) TCGA-F5-6814-01 5 86649005 86649005 G T RASA1 Nonsense_Mutation p.E429* 0.13 TCGA-F5-6814-01 5 86672814 86672814 G A RASA1 Silent p.S767S 0.16 TCGA-F5-6814-01 5 88047689 88047689 T G MEF2C Missense_Mutation p.S210R 0.23 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 5 88119671 88119671 T G MEF2C 5'UTR 0.37 TCGA-F5-6814-01 5 89820940 89820940 C A LYSMD3 Missense_Mutation p.R56I 0.13 deleterious(0) possibly_damaging(0.823) TCGA-F5-6814-01 5 89949699 89949699 C T GPR98 Silent p.I1436I 0.26 TCGA-F5-6814-01 5 90016770 90016770 C T GPR98 Silent p.I3214I 0.14 TCGA-F5-6814-01 5 90020985 90020985 G T GPR98 Missense_Mutation p.R3330I 0.43 benign(0.013) TCGA-F5-6814-01 5 90074881 90074881 C A GPR98 Missense_Mutation p.S4350Y 0.47 probably_damaging(0.951) TCGA-F5-6814-01 5 90087157 90087157 G T GPR98 Missense_Mutation p.K4837N 0.23 possibly_damaging(0.788) TCGA-F5-6814-01 5 90678773 90678773 G T ARRDC3 Missense_Mutation p.S46Y 0.33 deleterious(0) probably_damaging(0.934) TCGA-F5-6814-01 5 9122781 9122781 C T SEMA5A Missense_Mutation p.A590T 0.22 tolerated(0.36) benign(0.003) TCGA-F5-6814-01 5 92921049 92921049 A C NR2F1 Missense_Mutation p.K107T 0.43 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 5 92923743 92923743 C T NR2F1 Missense_Mutation p.A195V 0.24 deleterious(0.01) probably_damaging(0.945) TCGA-F5-6814-01 5 93732116 93732116 G T KIAA0825 Missense_Mutation p.L996M 0.40 tolerated(0.13) probably_damaging(0.999) TCGA-F5-6814-01 5 93820616 93820616 C A KIAA0825 Missense_Mutation p.Q330H 0.28 deleterious(0.04) possibly_damaging(0.739) TCGA-F5-6814-01 5 93966295 93966295 A C ANKRD32 Missense_Mutation p.K93T 0.42 deleterious(0.01) probably_damaging(0.959) TCGA-F5-6814-01 5 93985196 93985196 C A ANKRD32 Missense_Mutation p.S211Y 0.34 tolerated(0.56) benign(0.051) TCGA-F5-6814-01 5 93989121 93989121 G T ANKRD32 Missense_Mutation p.D343Y 0.07 tolerated(0.06) benign(0.003) TCGA-F5-6814-01 5 94043235 94043235 C A MCTP1 Missense_Mutation p.S989I 0.13 deleterious(0.05) probably_damaging(0.998) TCGA-F5-6814-01 5 94114832 94114832 C A MCTP1 Missense_Mutation p.D865Y 0.22 tolerated(0.14) possibly_damaging(0.804) TCGA-F5-6814-01 5 94134757 94134757 G T MCTP1 Missense_Mutation p.F839L 0.15 tolerated(0.36) benign(0.019) TCGA-F5-6814-01 5 94206163 94206163 C A MCTP1 Nonsense_Mutation p.E759* 0.26 TCGA-F5-6814-01 5 94288984 94288984 G A MCTP1 Missense_Mutation p.P307L 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 94289024 94289024 C A MCTP1 Nonsense_Mutation p.E294* 0.16 TCGA-F5-6814-01 5 94805483 94805483 C T TTC37 Splice_Site p.X1499_splice 0.39 TCGA-F5-6814-01 5 94991762 94991762 C T RFESD Nonsense_Mutation p.R128* 0.14 TCGA-F5-6814-01 5 95018233 95018233 T G SPATA9 Missense_Mutation p.Q50P 0.16 deleterious(0) possibly_damaging(0.773) TCGA-F5-6814-01 5 95158357 95158357 C A GLRX Nonsense_Mutation p.E4* 0.25 TCGA-F5-6814-01 5 95278754 95278754 C A ELL2 Splice_Site p.X50_splice 0.08 TCGA-F5-6814-01 5 95764938 95764938 C T PCSK1 Silent p.K88K 0.25 TCGA-F5-6814-01 5 96058410 96058410 G T CAST Intron 0.28 TCGA-F5-6814-01 5 96121618 96121618 C A ERAP1 Missense_Mutation p.G606V 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 96126301 96126301 C T ERAP1 Missense_Mutation p.A456T 0.22 tolerated(0.25) benign(0.005) TCGA-F5-6814-01 5 96215503 96215503 C T ERAP2 Silent p.F38F 0.26 TCGA-F5-6814-01 5 9629589 9629589 G A TAS2R1 Missense_Mutation p.P186S 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 9630189 9630189 A G TAS2R1 5'UTR 0.25 TCGA-F5-6814-01 5 96333727 96333727 T G LNPEP Missense_Mutation p.F511V 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 5 96430553 96430553 C A LIX1 Nonsense_Mutation p.E250* 0.12 TCGA-F5-6814-01 5 98129302 98129302 G A RGMB Missense_Mutation p.A428T 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 100010783 100010783 C T CCNC Missense_Mutation p.R25H 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6814-01 6 100838550 100838550 G A SIM1 Missense_Mutation p.S663L 0.24 deleterious_low_confidence(0) possibly_damaging(0.448) TCGA-F5-6814-01 6 100868827 100868827 C T SIM1 Missense_Mutation p.E336K 0.42 deleterious(0) possibly_damaging(0.872) TCGA-F5-6814-01 6 100896361 100896361 T C SIM1 Missense_Mutation p.D246G 0.45 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 101110344 101110344 T C ASCC3 Silent p.G785G 0.15 TCGA-F5-6814-01 6 101296418 101296418 C T ASCC3 Missense_Mutation p.R136Q 0.16 tolerated(0.23) possibly_damaging(0.498) TCGA-F5-6814-01 6 102069954 102069954 G T GRIK2 Missense_Mutation p.K82N 0.25 tolerated(0.08) benign(0.036) TCGA-F5-6814-01 6 102074490 102074490 G A GRIK2 Silent p.T173T 0.13 TCGA-F5-6814-01 6 102513800 102513800 A C GRIK2 Intron 0.13 TCGA-F5-6814-01 6 10411834 10411834 G A TFAP2A Intron 0.20 TCGA-F5-6814-01 6 105192041 105192041 G A HACE1 Missense_Mutation p.T836M 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 105232361 105232361 C A HACE1 Splice_Site p.X470_splice 0.20 TCGA-F5-6814-01 6 105526681 105526681 T A LIN28B 3'UTR 0.20 TCGA-F5-6814-01 6 105564626 105564626 C A BVES Missense_Mutation p.D256Y 0.53 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 105606331 105606331 T G POPDC3 3'UTR 0.39 TCGA-F5-6814-01 6 105609758 105609758 C A POPDC3 Missense_Mutation p.K9N 0.35 tolerated(0.3) benign(0.013) TCGA-F5-6814-01 6 105609870 105609870 G A POPDC3 5'UTR 0.30 TCGA-F5-6814-01 6 106546951 106546951 T C PRDM1 Intron 0.21 TCGA-F5-6814-01 6 106546953 106546953 A C PRDM1 Intron 0.20 TCGA-F5-6814-01 6 106555076 106555076 G T PRDM1 Missense_Mutation p.E731D 0.22 tolerated(0.21) benign(0.412) TCGA-F5-6814-01 6 107103579 107103579 C A QRSL1 Missense_Mutation p.L378I 0.32 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 6 107390844 107390844 G A BEND3 Silent p.F517F 0.47 TCGA-F5-6814-01 6 10751419 10751419 G A TMEM14B Missense_Mutation p.G52S 0.17 deleterious(0.02) possibly_damaging(0.71) TCGA-F5-6814-01 6 107780452 107780452 T G PDSS2 Missense_Mutation p.Y13S 0.33 tolerated_low_confidence(0.2) benign(0) TCGA-F5-6814-01 6 107954743 107954743 G T SOBP Missense_Mutation p.R232I 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 107956412 107956412 A C SOBP Missense_Mutation p.K788N 0.14 deleterious(0.01) possibly_damaging(0.88) TCGA-F5-6814-01 6 108093589 108093589 T C SCML4 Intron 0.24 TCGA-F5-6814-01 6 108214695 108214695 G A SEC63 Silent p.V555V 0.37 TCGA-F5-6814-01 6 108227665 108227665 C A SEC63 Missense_Mutation p.E316D 0.25 tolerated(0.27) benign(0.005) TCGA-F5-6814-01 6 10876176 10876176 C A GCM2 Missense_Mutation p.R177I 0.26 deleterious(0) benign(0.313) TCGA-F5-6814-01 6 108831534 108831534 C T LACE1 Silent p.I394I 0.42 TCGA-F5-6814-01 6 109197369 109197369 G T ARMC2 Nonsense_Mutation p.E163* 0.41 TCGA-F5-6814-01 6 109233702 109233702 A C ARMC2 Missense_Mutation p.N431H 0.33 deleterious(0.03) possibly_damaging(0.728) TCGA-F5-6814-01 6 10959032 10959032 C T SYCP2L Missense_Mutation p.R727C 0.15 deleterious(0.04) possibly_damaging(0.459) TCGA-F5-6814-01 6 109689605 109689605 A C CD164 3'UTR 0.50 TCGA-F5-6814-01 6 109787329 109787329 G T ZBTB24 Missense_Mutation p.L607I 0.42 deleterious(0.01) benign(0.117) TCGA-F5-6814-01 6 109827905 109827905 G A AK9 Missense_Mutation p.S1527F 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 6 109835528 109835528 A C AK9 Missense_Mutation p.F1393C 0.10 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 6 109850269 109850269 G A AK9 Missense_Mutation p.T1193M 0.31 tolerated(0.41) benign(0.002) TCGA-F5-6814-01 6 10990674 10990674 A G ELOVL2 Silent p.S169S 0.25 TCGA-F5-6814-01 6 109978002 109978002 T C AK9 Missense_Mutation p.N239S 0.41 tolerated(0.55) benign(0.006) TCGA-F5-6814-01 6 110087945 110087945 C T FIG4 Missense_Mutation p.L533F 0.20 deleterious(0.01) possibly_damaging(0.882) TCGA-F5-6814-01 6 110300735 110300735 G T GPR6 Silent p.V140V 0.18 TCGA-F5-6814-01 6 110421768 110421768 G A WASF1 Missense_Mutation p.S546L 0.42 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 6 110434608 110434608 G T WASF1 Silent p.S63S 0.31 TCGA-F5-6814-01 6 110434637 110434637 C A WASF1 Nonsense_Mutation p.E54* 0.48 TCGA-F5-6814-01 6 110714402 110714402 C T DDO Missense_Mutation p.G229D 0.22 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 110746003 110746003 G T SLC22A16 3'UTR 0.35 TCGA-F5-6814-01 6 110746284 110746284 A C SLC22A16 Missense_Mutation p.F509C 0.23 deleterious(0.04) possibly_damaging(0.814) TCGA-F5-6814-01 6 11104238 11104238 C A ERVFRD-1 Nonsense_Mutation p.E436* 0.17 TCGA-F5-6814-01 6 111213641 111213641 A G AMD1 Missense_Mutation p.T204A 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 6 111214008 111214008 C T AMD1 Missense_Mutation p.S229L 0.20 deleterious(0) probably_damaging(0.947) TCGA-F5-6814-01 6 111494036 111494036 T G SLC16A10 Missense_Mutation p.F161C 0.08 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 6 111498444 111498444 G T SLC16A10 Missense_Mutation p.G173V 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 111540116 111540116 G A SLC16A10 Missense_Mutation p.D396N 0.08 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 111588182 111588182 A C KIAA1919 Missense_Mutation p.S473R 0.09 tolerated(0.33) benign(0.014) TCGA-F5-6814-01 6 111678278 111678278 C T REV3L Missense_Mutation p.E2375K 0.19 deleterious(0.04) possibly_damaging(0.641) TCGA-F5-6814-01 6 111694402 111694402 C A REV3L Missense_Mutation p.R1719I 0.45 deleterious(0) possibly_damaging(0.729) TCGA-F5-6814-01 6 111694478 111694478 T G REV3L Missense_Mutation p.N1694H 0.38 tolerated_low_confidence(0.18) benign(0.004) TCGA-F5-6814-01 6 111696269 111696269 C T REV3L Missense_Mutation p.E1097K 0.11 deleterious(0.01) possibly_damaging(0.838) TCGA-F5-6814-01 6 111697700 111697700 C T REV3L Missense_Mutation p.E620K 0.28 tolerated(0.05) benign(0.17) TCGA-F5-6814-01 6 111714104 111714104 G A REV3L Missense_Mutation p.R213W 0.16 tolerated(0.06) benign(0.006) TCGA-F5-6814-01 6 112392520 112392520 G T TUBE1 3'UTR 0.29 TCGA-F5-6814-01 6 112397686 112397686 G T TUBE1 Missense_Mutation p.L159I 0.08 tolerated(1) benign(0.014) TCGA-F5-6814-01 6 112452262 112452262 G T LAMA4 Silent p.I1292I 0.13 TCGA-F5-6814-01 6 112462684 112462684 G T LAMA4 Missense_Mutation p.L897I 0.25 tolerated(0.15) probably_damaging(0.958) TCGA-F5-6814-01 6 112486388 112486388 G T LAMA4 Missense_Mutation p.L548I 0.56 tolerated(0.56) benign(0.02) TCGA-F5-6814-01 6 112672064 112672064 G T RFPL4B 3'UTR 0.14 TCGA-F5-6814-01 6 112672153 112672153 T C RFPL4B 3'UTR 0.47 TCGA-F5-6814-01 6 112672269 112672269 A C RFPL4B 3'UTR 0.35 TCGA-F5-6814-01 6 114274487 114274487 G T HDAC2 Nonsense_Mutation p.S198* 0.37 TCGA-F5-6814-01 6 114378481 114378481 G T HS3ST5 Missense_Mutation p.F327L 0.30 deleterious(0.01) possibly_damaging(0.891) TCGA-F5-6814-01 6 116565215 116565215 G A NT5DC1 3'UTR 0.38 TCGA-F5-6814-01 6 116574620 116574620 C A TSPYL4 Missense_Mutation p.K184N 0.23 tolerated(0.13) possibly_damaging(0.494) TCGA-F5-6814-01 6 116752342 116752342 G T DSE Missense_Mutation p.R299I 0.38 tolerated(0.13) possibly_damaging(0.885) TCGA-F5-6814-01 6 116784888 116784888 A C FAM26F 3'UTR 0.26 TCGA-F5-6814-01 6 116818158 116818158 G T TRAPPC3L Missense_Mutation p.L169I 0.24 tolerated(0.95) benign(0.085) TCGA-F5-6814-01 6 116821668 116821668 C T TRAPPC3L Silent p.G134G 0.29 TCGA-F5-6814-01 6 116832953 116832953 C T FAM26E Missense_Mutation p.R32C 0.19 deleterious(0.02) probably_damaging(0.988) TCGA-F5-6814-01 6 116836792 116836792 G A FAM26E Silent p.A190A 0.46 TCGA-F5-6814-01 6 116875505 116875505 C T FAM26D Silent p.Y40Y 0.36 TCGA-F5-6814-01 6 116912065 116912065 G T RWDD1 Nonsense_Mutation p.E188* 0.41 TCGA-F5-6814-01 6 116987846 116987846 T G ZUFSP Missense_Mutation p.E170D 0.31 tolerated(0.15) probably_damaging(0.935) TCGA-F5-6814-01 6 117121905 117121905 A C GPRC6A Missense_Mutation p.F464V 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 117128002 117128002 T G GPRC6A Missense_Mutation p.K289T 0.29 deleterious(0.02) benign(0.314) TCGA-F5-6814-01 6 117130687 117130687 C T GPRC6A Silent p.G96G 0.40 TCGA-F5-6814-01 6 11714610 11714610 C T ADTRP 3'Flank 0.43 TCGA-F5-6814-01 6 117665230 117665230 C A ROS1 Missense_Mutation p.R1506I 0.35 deleterious(0.04) benign(0.001) TCGA-F5-6814-01 6 117665399 117665399 C A ROS1 Missense_Mutation p.D1450Y 0.15 tolerated(0.52) benign(0.017) TCGA-F5-6814-01 6 117681149 117681149 T A ROS1 Silent p.I1157I 0.40 TCGA-F5-6814-01 6 117715410 117715410 C A ROS1 Missense_Mutation p.R360I 0.21 deleterious(0.03) benign(0.164) TCGA-F5-6814-01 6 117715830 117715830 C T ROS1 Missense_Mutation p.V310I 0.23 tolerated(0.29) possibly_damaging(0.472) TCGA-F5-6814-01 6 117718123 117718123 C A ROS1 Missense_Mutation p.R245I 0.14 tolerated(0.08) possibly_damaging(0.702) TCGA-F5-6814-01 6 117725528 117725528 C T ROS1 Missense_Mutation p.R118Q 0.42 tolerated(0.25) benign(0.173) TCGA-F5-6814-01 6 117846595 117846595 G T DCBLD1 Missense_Mutation p.D195Y 0.11 deleterious(0) benign(0.15) TCGA-F5-6814-01 6 117894685 117894685 C T GOPC Missense_Mutation p.R254Q 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-F5-6814-01 6 118596654 118596654 T G SLC35F1 Missense_Mutation p.L224V 0.27 deleterious(0.01) possibly_damaging(0.764) TCGA-F5-6814-01 6 118786672 118786672 T G CEP85L Missense_Mutation p.K775Q 0.48 deleterious(0.05) probably_damaging(0.999) TCGA-F5-6814-01 6 119238726 119238726 C A MCM9 Nonsense_Mutation p.G302* 0.41 TCGA-F5-6814-01 6 119324215 119324215 C A FAM184A Splice_Site p.X646_splice 0.30 TCGA-F5-6814-01 6 119338090 119338090 C A FAM184A Missense_Mutation p.R451I 0.33 tolerated(0.28) benign(0.301) TCGA-F5-6814-01 6 119344182 119344182 C A FAM184A Nonsense_Mutation p.E360* 0.11 TCGA-F5-6814-01 6 119345412 119345412 C A FAM184A Missense_Mutation p.K242N 0.33 tolerated(0.05) benign(0.258) TCGA-F5-6814-01 6 119345675 119345675 A G FAM184A Missense_Mutation p.S155P 0.10 deleterious(0) probably_damaging(0.96) TCGA-F5-6814-01 6 119345835 119345835 C T FAM184A Silent p.E101E 0.38 TCGA-F5-6814-01 6 12122968 12122968 T G HIVEP1 Missense_Mutation p.F980L 0.48 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 12125642 12125642 C T HIVEP1 Nonsense_Mutation p.R1872* 0.37 TCGA-F5-6814-01 6 121402015 121402015 G A TBC1D32 Nonsense_Mutation p.R1226* 0.41 TCGA-F5-6814-01 6 121452835 121452835 T G TBC1D32 Missense_Mutation p.E946A 0.21 tolerated(0.11) benign(0.393) TCGA-F5-6814-01 6 121768451 121768451 G A GJA1 Missense_Mutation p.R153Q 0.08 deleterious(0.04) benign(0.286) TCGA-F5-6814-01 6 121768906 121768906 G T GJA1 Missense_Mutation p.A305S 0.38 tolerated(0.18) benign(0.429) TCGA-F5-6814-01 6 121769957 121769957 A C GJA1 3'UTR 0.35 TCGA-F5-6814-01 6 123104892 123104892 C T FABP7 Missense_Mutation p.R127C 0.15 deleterious(0.03) probably_damaging(0.973) TCGA-F5-6814-01 6 123588873 123588873 C A TRDN Nonsense_Mutation p.E588* 0.37 TCGA-F5-6814-01 6 123786088 123786088 T A TRDN Missense_Mutation p.Q298H 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.598) TCGA-F5-6814-01 6 123837334 123837334 C A TRDN Nonsense_Mutation p.E168* 0.54 TCGA-F5-6814-01 6 125144472 125144472 T G NKAIN2 3'UTR 0.20 TCGA-F5-6814-01 6 125366410 125366410 C A RNF217 Missense_Mutation p.F20L 0.13 tolerated(0.18) benign(0.035) TCGA-F5-6814-01 6 126360015 126360015 G T TRMT11 3'UTR 0.35 TCGA-F5-6814-01 6 12719080 12719080 G A PHACTR1 Splice_Site p.X35_splice 0.40 TCGA-F5-6814-01 6 127768058 127768058 G A KIAA0408 Missense_Mutation p.S469L 0.38 deleterious(0.04) benign(0.057) TCGA-F5-6814-01 6 127768866 127768866 G T KIAA0408 Missense_Mutation p.L200I 0.31 deleterious(0.01) probably_damaging(0.921) TCGA-F5-6814-01 6 127837614 127837614 G A SOGA3 Missense_Mutation p.S49L 0.40 tolerated_low_confidence(0.13) benign(0.012) TCGA-F5-6814-01 6 128294293 128294293 G A PTPRK Silent p.G1387G 0.24 TCGA-F5-6814-01 6 128320032 128320032 T C PTPRK Missense_Mutation p.T838A 0.19 tolerated(0.45) benign(0.002) TCGA-F5-6814-01 6 128540168 128540168 C T PTPRK Missense_Mutation p.R256K 0.08 tolerated(0.71) benign(0.085) TCGA-F5-6814-01 6 128643444 128643444 T G PTPRK Missense_Mutation p.I79L 0.31 tolerated(0.44) benign(0.002) TCGA-F5-6814-01 6 129204495 129204495 G A LAMA2 Silent p.Q35Q 0.19 TCGA-F5-6814-01 6 129573288 129573288 A G LAMA2 Silent p.E648E 0.50 TCGA-F5-6814-01 6 129573304 129573304 T C LAMA2 Silent p.L654L 0.26 TCGA-F5-6814-01 6 129618867 129618867 T C LAMA2 Missense_Mutation p.V965A 0.17 tolerated(0.11) benign(0.005) TCGA-F5-6814-01 6 129618900 129618900 C A LAMA2 Nonsense_Mutation p.S976* 0.31 TCGA-F5-6814-01 6 129636744 129636744 G T LAMA2 Missense_Mutation p.D1227Y 0.35 tolerated(0.56) possibly_damaging(0.594) TCGA-F5-6814-01 6 129712656 129712656 A C LAMA2 Missense_Mutation p.K1698Q 0.33 tolerated(0.18) benign(0.035) TCGA-F5-6814-01 6 129813113 129813113 G A LAMA2 Missense_Mutation p.E2656K 0.18 tolerated(0.06) benign(0.164) TCGA-F5-6814-01 6 129833570 129833570 A G LAMA2 Missense_Mutation p.T2974A 0.30 deleterious(0.01) benign(0.221) TCGA-F5-6814-01 6 129921801 129921801 T G ARHGAP18 Missense_Mutation p.K520Q 0.20 tolerated(0.15) benign(0.004) TCGA-F5-6814-01 6 129963161 129963161 C T ARHGAP18 Missense_Mutation p.R39H 0.36 deleterious(0.02) possibly_damaging(0.459) TCGA-F5-6814-01 6 130460824 130460824 G T L3MBTL3 Missense_Mutation p.G757C 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 130497263 130497263 A G SAMD3 Intron 0.53 TCGA-F5-6814-01 6 131277519 131277519 T C EPB41L2 Missense_Mutation p.N36S 0.28 tolerated(0.12) benign(0.067) TCGA-F5-6814-01 6 1314557 1314557 T C FOXQ1 3'UTR 0.08 TCGA-F5-6814-01 6 131908013 131908013 A C MED23 3'UTR 0.11 TCGA-F5-6814-01 6 131913618 131913618 G T MED23 Intron 0.35 TCGA-F5-6814-01 6 131923518 131923518 G A MED23 Silent p.V645V 0.33 TCGA-F5-6814-01 6 131939626 131939626 G A MED23 Missense_Mutation p.S234L 0.30 deleterious(0.05) probably_damaging(0.979) TCGA-F5-6814-01 6 131995364 131995364 G T ENPP3 Missense_Mutation p.K235N 0.23 deleterious(0.01) possibly_damaging(0.776) TCGA-F5-6814-01 6 132031419 132031419 T C CTAGE9 Missense_Mutation p.T247A 0.06 tolerated(0.33) benign(0.017) TCGA-F5-6814-01 6 132201026 132201026 T G ENPP1 Missense_Mutation p.I651S 0.16 tolerated(0.76) benign(0.001) TCGA-F5-6814-01 6 132859859 132859859 T G TAAR9 Missense_Mutation p.F144C 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-F5-6814-01 6 132892144 132892144 G A TAAR6 Silent p.A228A 0.09 TCGA-F5-6814-01 6 132910083 132910083 C A TAAR5 Missense_Mutation p.R248I 0.27 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 6 133014279 133014279 G T VNN1 Missense_Mutation p.A237D 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 6 133110955 133110955 A C SLC18B1 Missense_Mutation p.F101V 0.10 tolerated(0.05) probably_damaging(0.971) TCGA-F5-6814-01 6 133703535 133703535 G T EYA4 Missense_Mutation p.K13N 0.43 deleterious_low_confidence(0) benign(0.135) TCGA-F5-6814-01 6 133804202 133804202 C A EYA4 Silent p.I380I 0.46 TCGA-F5-6814-01 6 133836526 133836526 T G EYA4 Missense_Mutation p.D523E 0.16 deleterious(0.02) probably_damaging(0.993) TCGA-F5-6814-01 6 133844247 133844247 C T EYA4 Missense_Mutation p.A557V 0.31 deleterious(0.02) possibly_damaging(0.679) TCGA-F5-6814-01 6 134308169 134308169 A C TBPL1 Missense_Mutation p.E184D 0.36 tolerated(0.2) benign(0.001) TCGA-F5-6814-01 6 134308202 134308202 C A TBPL1 3'UTR 0.27 TCGA-F5-6814-01 6 135358418 135358418 T C HBS1L Intron 0.11 TCGA-F5-6814-01 6 135511465 135511465 C T MYB Silent p.I169I 0.42 TCGA-F5-6814-01 6 135606715 135606715 G T AHI1 3'UTR 0.32 TCGA-F5-6814-01 6 135759581 135759581 G T AHI1 Silent p.I656I 0.44 TCGA-F5-6814-01 6 135778768 135778768 G A AHI1 Missense_Mutation p.L339F 0.32 tolerated(1) possibly_damaging(0.779) TCGA-F5-6814-01 6 13632736 13632736 A C RANBP9 Missense_Mutation p.L605V 0.18 tolerated(0.31) benign(0.008) TCGA-F5-6814-01 6 136565990 136565990 T G MTFR2 Missense_Mutation p.E27D 0.29 tolerated(0.09) benign(0.029) TCGA-F5-6814-01 6 13657400 13657400 C T RANBP9 Missense_Mutation p.G282D 0.40 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 136597112 136597112 C T BCLAF1 Silent p.K517K 0.14 TCGA-F5-6814-01 6 136704820 136704820 G T MAP7 Missense_Mutation p.S231Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 6 137338227 137338227 A C IL20RA Silent p.S34S 0.21 TCGA-F5-6814-01 6 137468934 137468934 C A IL22RA2 Missense_Mutation p.K189N 0.33 tolerated(0.23) benign(0.085) TCGA-F5-6814-01 6 138751580 138751580 G A NHSL1 Missense_Mutation p.A1305V 0.36 tolerated(0.47) benign(0.009) TCGA-F5-6814-01 6 139097400 139097400 G A CCDC28A Missense_Mutation p.R138Q 0.20 deleterious(0) possibly_damaging(0.812) TCGA-F5-6814-01 6 139165562 139165562 A C ECT2L Missense_Mutation p.K203N 0.28 tolerated(0.05) benign(0.063) TCGA-F5-6814-01 6 139226220 139226220 C T REPS1 Missense_Mutation p.R790Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 139264669 139264669 G T REPS1 Missense_Mutation p.L321I 0.39 tolerated(0.37) probably_damaging(0.968) TCGA-F5-6814-01 6 139265107 139265107 C A REPS1 Nonsense_Mutation p.E267* 0.45 TCGA-F5-6814-01 6 139498117 139498117 G A HECA Missense_Mutation p.D503N 0.12 tolerated(0.05) possibly_damaging(0.807) TCGA-F5-6814-01 6 13979518 13979518 A C RNF182 3'UTR 0.42 TCGA-F5-6814-01 6 13979610 13979610 G A RNF182 3'UTR 0.08 TCGA-F5-6814-01 6 13979784 13979784 G T RNF182 3'UTR 0.19 TCGA-F5-6814-01 6 14131843 14131843 C T CD83 Silent p.F82F 0.40 TCGA-F5-6814-01 6 143074955 143074955 G T HIVEP2 Silent p.V2210V 0.34 TCGA-F5-6814-01 6 143093879 143093879 G T HIVEP2 Missense_Mutation p.S666Y 0.41 deleterious(0.03) benign(0.309) TCGA-F5-6814-01 6 143094601 143094601 G T HIVEP2 Silent p.I425I 0.45 TCGA-F5-6814-01 6 143095448 143095448 A C HIVEP2 Missense_Mutation p.I143R 0.19 deleterious(0.02) benign(0.158) TCGA-F5-6814-01 6 144508166 144508166 G A STX11 Silent p.A134A 0.31 TCGA-F5-6814-01 6 144613013 144613013 G A UTRN Missense_Mutation p.E17K 0.23 deleterious_low_confidence(0) benign(0.355) TCGA-F5-6814-01 6 144858824 144858824 G A UTRN Missense_Mutation p.E2114K 0.21 tolerated(0.29) benign(0.001) TCGA-F5-6814-01 6 145946831 145946831 T G EPM2A 3'UTR 0.38 TCGA-F5-6814-01 6 146256428 146256428 C A SHPRH Missense_Mutation p.D907Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 6 148855999 148855999 T G SASH1 Missense_Mutation p.V686G 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-F5-6814-01 6 149068530 149068530 T C UST 5'UTR 0.22 TCGA-F5-6814-01 6 149285711 149285711 C T UST Intron 0.32 TCGA-F5-6814-01 6 150001306 150001306 A C LATS1 Silent p.V766V 0.09 TCGA-F5-6814-01 6 150001394 150001394 C T LATS1 Missense_Mutation p.R737Q 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-F5-6814-01 6 150004506 150004506 G A LATS1 Silent p.Y573Y 0.11 TCGA-F5-6814-01 6 150238052 150238052 G T RAET1G Missense_Mutation p.S334Y 0.33 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-F5-6814-01 6 150240475 150240475 G T RAET1G Intron 0.10 TCGA-F5-6814-01 6 150267749 150267749 C A ULBP2 Missense_Mutation p.F197L 0.10 deleterious(0.01) possibly_damaging(0.696) TCGA-F5-6814-01 6 150290423 150290423 G T ULBP1 Missense_Mutation p.K184N 0.20 tolerated(0.17) benign(0.111) TCGA-F5-6814-01 6 150291265 150291265 G T ULBP1 3'UTR 0.38 TCGA-F5-6814-01 6 150710506 150710506 A C IYD Missense_Mutation p.E66A 0.08 tolerated(0.48) benign(0.01) TCGA-F5-6814-01 6 151153217 151153217 G A PLEKHG1 Silent p.A990A 0.62 TCGA-F5-6814-01 6 151161666 151161666 G T PLEKHG1 Missense_Mutation p.Q1264H 0.55 deleterious(0.02) probably_damaging(0.969) TCGA-F5-6814-01 6 151161917 151161917 A C PLEKHG1 Missense_Mutation p.N1348T 0.24 tolerated_low_confidence(0.12) benign(0.05) TCGA-F5-6814-01 6 151413654 151413654 C A MTHFD1L Missense_Mutation p.L967I 0.35 tolerated(0.33) benign(0.268) TCGA-F5-6814-01 6 151670295 151670295 G A AKAP12 Missense_Mutation p.E257K 0.48 tolerated(0.15) possibly_damaging(0.569) TCGA-F5-6814-01 6 151673752 151673752 A C AKAP12 Missense_Mutation p.K1409T 0.40 tolerated(0.1) benign(0.062) TCGA-F5-6814-01 6 151694781 151694781 A G ZBTB2 5'UTR 0.31 TCGA-F5-6814-01 6 151779683 151779683 G T C6orf211 Missense_Mutation p.R123I 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-F5-6814-01 6 151865732 151865732 A C CCDC170 Missense_Mutation p.N157H 0.36 deleterious(0.02) possibly_damaging(0.789) TCGA-F5-6814-01 6 151907116 151907116 G A CCDC170 Silent p.Q395Q 0.09 TCGA-F5-6814-01 6 151917481 151917481 G A CCDC170 Silent p.Q493Q 0.36 TCGA-F5-6814-01 6 152129134 152129134 G A ESR1 Silent p.P29P 0.21 TCGA-F5-6814-01 6 152163731 152163731 G T ESR1 Splice_Site p.X151_splice 0.46 TCGA-F5-6814-01 6 152201885 152201885 G A ESR1 Missense_Mutation p.E247K 0.38 deleterious(0) possibly_damaging(0.869) TCGA-F5-6814-01 6 152265605 152265605 A G ESR1 Missense_Mutation p.E353G 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 152443655 152443655 T G SYNE1 Missense_Mutation p.E8770D 0.20 benign(0.023) TCGA-F5-6814-01 6 152454537 152454537 T C SYNE1 Silent p.G8625G 0.17 TCGA-F5-6814-01 6 15246722 15246722 A C JARID2 5'UTR 0.21 TCGA-F5-6814-01 6 152470751 152470751 G A SYNE1 Missense_Mutation p.A8168V 0.34 benign(0.005) TCGA-F5-6814-01 6 152527479 152527479 G T SYNE1 Missense_Mutation p.L7615M 0.35 possibly_damaging(0.781) TCGA-F5-6814-01 6 152542110 152542110 C A SYNE1 Missense_Mutation p.R7243I 0.23 benign(0.232) TCGA-F5-6814-01 6 152552526 152552526 C A SYNE1 Missense_Mutation p.K7013N 0.40 possibly_damaging(0.902) TCGA-F5-6814-01 6 152647113 152647113 C A SYNE1 Nonsense_Mutation p.E5140* 0.36 TCGA-F5-6814-01 6 152647133 152647133 G A SYNE1 Missense_Mutation p.S5133L 0.31 benign(0.013) TCGA-F5-6814-01 6 152651032 152651032 G T SYNE1 Missense_Mutation p.H4930N 0.34 benign(0.11) TCGA-F5-6814-01 6 152652223 152652223 G A SYNE1 Silent p.L4533L 0.07 TCGA-F5-6814-01 6 152671887 152671887 G T SYNE1 Missense_Mutation p.L3867M 0.13 probably_damaging(0.988) TCGA-F5-6814-01 6 152688502 152688502 G A SYNE1 Silent p.L3275L 0.25 TCGA-F5-6814-01 6 152697642 152697642 C T SYNE1 Silent p.Q3066Q 0.16 TCGA-F5-6814-01 6 152719780 152719780 G T SYNE1 Missense_Mutation p.L2442I 0.41 benign(0.005) TCGA-F5-6814-01 6 152720824 152720824 T C SYNE1 Silent p.K2388K 0.38 TCGA-F5-6814-01 6 152740858 152740858 C A SYNE1 Splice_Site p.X1756_splice 0.22 TCGA-F5-6814-01 6 152748874 152748874 A C SYNE1 Missense_Mutation p.I1685S 0.31 benign(0.135) TCGA-F5-6814-01 6 152771785 152771785 C T SYNE1 Missense_Mutation p.D1124N 0.44 probably_damaging(0.999) TCGA-F5-6814-01 6 152792896 152792896 G T SYNE1 Missense_Mutation p.H490N 0.44 benign(0.001) TCGA-F5-6814-01 6 152804353 152804353 G T SYNE1 Missense_Mutation p.S406Y 0.36 possibly_damaging(0.812) TCGA-F5-6814-01 6 153293516 153293516 A G FBXO5 Missense_Mutation p.V328A 0.33 deleterious(0) possibly_damaging(0.735) TCGA-F5-6814-01 6 153296106 153296106 G A FBXO5 Nonsense_Mutation p.R252* 0.35 TCGA-F5-6814-01 6 153296519 153296519 C T FBXO5 Missense_Mutation p.R114H 0.19 tolerated(0.12) benign(0) TCGA-F5-6814-01 6 153332789 153332789 C A RGS17 Missense_Mutation p.D185Y 0.46 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 153345425 153345425 T C RGS17 Missense_Mutation p.D139G 0.11 deleterious(0) possibly_damaging(0.857) TCGA-F5-6814-01 6 153345514 153345514 C A RGS17 Missense_Mutation p.E109D 0.23 deleterious(0.05) benign(0.148) TCGA-F5-6814-01 6 154412478 154412478 C A OPRM1 Missense_Mutation p.F438L 0.29 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 6 154429174 154429174 C A OPRM1 Intron 0.45 TCGA-F5-6814-01 6 154429185 154429185 T C OPRM1 Intron 0.27 TCGA-F5-6814-01 6 154489154 154489154 C T IPCEF1 Silent p.S335S 0.24 TCGA-F5-6814-01 6 155154083 155154083 C T SCAF8 Missense_Mutation p.R1124W 0.13 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-F5-6814-01 6 155154227 155154227 G T SCAF8 Nonsense_Mutation p.E1172* 0.31 TCGA-F5-6814-01 6 155458481 155458481 G A TIAM2 Silent p.R455R 0.12 TCGA-F5-6814-01 6 155485575 155485575 G T TIAM2 Missense_Mutation p.E685D 0.26 deleterious(0) probably_damaging(0.947) TCGA-F5-6814-01 6 155572060 155572060 C T TIAM2 Missense_Mutation p.S1322L 0.18 deleterious(0) probably_damaging(0.935) TCGA-F5-6814-01 6 155776966 155776966 T C NOX3 5'UTR 0.36 TCGA-F5-6814-01 6 157150460 157150460 G A ARID1B Missense_Mutation p.G548S 0.08 possibly_damaging(0.702) TCGA-F5-6814-01 6 158349644 158349644 G A SNX9 Missense_Mutation p.E400K 0.12 deleterious(0) benign(0.179) TCGA-F5-6814-01 6 158924955 158924955 G T TULP4 Missense_Mutation p.M1420I 0.42 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-F5-6814-01 6 159044589 159044589 G A TMEM181 Missense_Mutation p.E439K 0.13 deleterious(0.04) possibly_damaging(0.792) TCGA-F5-6814-01 6 159190847 159190847 G A EZR Missense_Mutation p.A407V 0.33 tolerated(0.11) benign(0.033) TCGA-F5-6814-01 6 159457551 159457551 G A TAGAP Nonsense_Mutation p.R502* 0.15 TCGA-F5-6814-01 6 159660929 159660929 G A FNDC1 Missense_Mutation p.D1521N 0.33 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 6 159670167 159670167 C T FNDC1 Missense_Mutation p.S1596F 0.33 deleterious(0) probably_damaging(0.945) TCGA-F5-6814-01 6 159672415 159672415 G A FNDC1 Missense_Mutation p.S1639N 0.41 tolerated(0.08) possibly_damaging(0.767) TCGA-F5-6814-01 6 160200802 160200802 C T TCP1 Silent p.A437A 0.24 TCGA-F5-6814-01 6 160328046 160328046 G A MAS1 Missense_Mutation p.G20D 0.12 tolerated(0.33) benign(0) TCGA-F5-6814-01 6 160479992 160479992 T G IGF2R Missense_Mutation p.S985A 0.39 tolerated(0.89) benign(0.02) TCGA-F5-6814-01 6 160485930 160485930 T G IGF2R Missense_Mutation p.F1371C 0.40 deleterious(0.01) probably_damaging(0.928) TCGA-F5-6814-01 6 160517571 160517571 G A IGF2R Silent p.V2252V 0.17 TCGA-F5-6814-01 6 160575836 160575836 C T SLC22A1 Silent p.L464L 0.31 TCGA-F5-6814-01 6 160663417 160663417 T G SLC22A2 Missense_Mutation p.I433L 0.11 tolerated(0.25) benign(0.02) TCGA-F5-6814-01 6 160864723 160864723 C A SLC22A3 Missense_Mutation p.L487M 0.36 tolerated(0.06) probably_damaging(0.999) TCGA-F5-6814-01 6 160874554 160874554 G T SLC22A3 3'Flank 0.32 TCGA-F5-6814-01 6 160899548 160899548 G T LPAL2 RNA 0.23 TCGA-F5-6814-01 6 160905123 160905123 G T LPAL2 RNA 0.70 TCGA-F5-6814-01 6 160913865 160913865 G A LPAL2 RNA 0.30 TCGA-F5-6814-01 6 160952730 160952730 A C LPA 3'UTR 0.21 TCGA-F5-6814-01 6 160966501 160966501 A C LPA Missense_Mutation p.L1790R 0.08 tolerated(0.85) benign(0.081) TCGA-F5-6814-01 6 160969684 160969684 T C LPA Missense_Mutation p.T1661A 0.44 tolerated(0.72) benign(0.295) TCGA-F5-6814-01 6 161127531 161127531 G T PLG Nonsense_Mutation p.E48* 0.05 TCGA-F5-6814-01 6 1612835 1612835 A C FOXC1 3'UTR 0.48 TCGA-F5-6814-01 6 1613205 1613205 A C FOXC1 3'UTR 0.29 TCGA-F5-6814-01 6 16146995 16146995 T G MYLIP 3'UTR 0.29 TCGA-F5-6814-01 6 161537932 161537932 C A MAP3K4 3'UTR 0.42 TCGA-F5-6814-01 6 161771059 161771059 G T PARK2 3'UTR 0.25 TCGA-F5-6814-01 6 16274676 16274676 G T GMPR Nonsense_Mutation p.E166* 0.54 TCGA-F5-6814-01 6 163985804 163985804 A C QKI Intron 0.41 TCGA-F5-6814-01 6 163987656 163987656 G T QKI Intron 0.40 TCGA-F5-6814-01 6 165827165 165827165 A T PDE10A Missense_Mutation p.L368M 0.41 tolerated(0.13) possibly_damaging(0.78) TCGA-F5-6814-01 6 166571715 166571715 C T T 3'UTR 0.32 TCGA-F5-6814-01 6 166738024 166738024 C T SFT2D1 Splice_Site p.X137_splice 0.12 TCGA-F5-6814-01 6 166845962 166845962 T C RPS6KA2 Missense_Mutation p.K458R 0.12 tolerated(0.37) benign(0.006) TCGA-F5-6814-01 6 167416760 167416760 T G FGFR1OP Intron 0.32 TCGA-F5-6814-01 6 167570440 167570440 G A GPR31 Missense_Mutation p.R294W 0.48 deleterious(0) benign(0.326) TCGA-F5-6814-01 6 167570672 167570672 C T GPR31 Silent p.K216K 0.33 TCGA-F5-6814-01 6 168271133 168271133 A C MLLT4 Missense_Mutation p.E123D 0.31 deleterious(0.05) probably_damaging(0.997) TCGA-F5-6814-01 6 168276074 168276074 G A MLLT4 Missense_Mutation p.R213Q 0.19 deleterious(0) probably_damaging(0.913) TCGA-F5-6814-01 6 168370613 168370613 T C MLLT4 Nonstop_Mutation p.*314Rext*20 0.28 TCGA-F5-6814-01 6 168708155 168708155 C T DACT2 Missense_Mutation p.R761H 0.19 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 6 169620302 169620302 C T THBS2 Missense_Mutation p.E1168K 0.41 tolerated(0.17) probably_damaging(1) TCGA-F5-6814-01 6 169622415 169622415 C A THBS2 Missense_Mutation p.W1050C 0.41 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 6 169623439 169623439 G A THBS2 Missense_Mutation p.P969S 0.38 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 169628246 169628246 T C THBS2 Missense_Mutation p.D797G 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 169648782 169648782 G A THBS2 Silent p.F113F 0.19 TCGA-F5-6814-01 6 170103741 170103741 T G C6orf120 3'UTR 0.09 TCGA-F5-6814-01 6 170103949 170103949 C T C6orf120 3'UTR 0.31 TCGA-F5-6814-01 6 170104527 170104527 C A C6orf120 3'UTR 0.33 TCGA-F5-6814-01 6 170110384 170110384 C A PHF10 Missense_Mutation p.R354I 0.33 tolerated(0.17) benign(0.128) TCGA-F5-6814-01 6 170140346 170140346 C T TCTE3 Missense_Mutation p.A178T 0.37 tolerated(0.15) benign(0.195) TCGA-F5-6814-01 6 170143199 170143199 G T TCTE3 Missense_Mutation p.Q155K 0.35 deleterious(0.03) probably_damaging(0.987) TCGA-F5-6814-01 6 170626789 170626789 G A FAM120B Missense_Mutation p.R104Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 170626876 170626876 T C FAM120B Missense_Mutation p.I133T 0.15 deleterious(0) benign(0.083) TCGA-F5-6814-01 6 170697455 170697455 C T FAM120B Silent p.S788S 0.35 TCGA-F5-6814-01 6 17606107 17606107 A C FAM8A1 Silent p.I320I 0.09 TCGA-F5-6814-01 6 17675845 17675845 G A NUP153 Missense_Mutation p.S164F 0.37 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 6 18132378 18132378 A G TPMT Missense_Mutation p.I204T 0.22 deleterious(0) probably_damaging(0.923) TCGA-F5-6814-01 6 18207679 18207679 T G KDM1B Silent p.G338G 0.11 TCGA-F5-6814-01 6 21231322 21231322 C A CDKAL1 3'UTR 0.45 TCGA-F5-6814-01 6 21598238 21598238 T G SOX4 3'UTR 0.30 TCGA-F5-6814-01 6 21598551 21598551 G T SOX4 3'UTR 0.17 TCGA-F5-6814-01 6 22287654 22287654 T G PRL Missense_Mutation p.I221L 0.25 tolerated(0.78) benign(0.023) TCGA-F5-6814-01 6 22294638 22294638 G A PRL Silent p.F68F 0.23 TCGA-F5-6814-01 6 24178620 24178620 C A DCDC2 Nonsense_Mutation p.E422* 0.32 TCGA-F5-6814-01 6 24278339 24278339 T G DCDC2 Missense_Mutation p.K287T 0.39 tolerated(0.05) possibly_damaging(0.698) TCGA-F5-6814-01 6 24520643 24520643 C T ALDH5A1 Silent p.H308H 0.28 TCGA-F5-6814-01 6 24533945 24533945 C A ALDH5A1 3'UTR 0.17 TCGA-F5-6814-01 6 24566874 24566874 C A KIAA0319 Missense_Mutation p.R748I 0.44 deleterious(0) benign(0.102) TCGA-F5-6814-01 6 24651110 24651110 C T TDP2 Missense_Mutation p.R332Q 0.45 tolerated(1) benign(0.007) TCGA-F5-6814-01 6 24706384 24706384 C T C6orf62 Missense_Mutation p.R224H 0.33 tolerated_low_confidence(0.17) benign(0) TCGA-F5-6814-01 6 24832495 24832495 G T FAM65B Missense_Mutation p.S799Y 0.18 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 6 24839745 24839745 G T FAM65B Intron 0.39 TCGA-F5-6814-01 6 25093762 25093762 C A CMAHP RNA 0.38 TCGA-F5-6814-01 6 25773812 25773812 C A SLC17A4 Silent p.V299V 0.39 TCGA-F5-6814-01 6 25779301 25779301 G T SLC17A4 Missense_Mutation p.R460I 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 25849654 25849654 G A SLC17A3 Missense_Mutation p.S437L 0.13 tolerated(0.06) benign(0.066) TCGA-F5-6814-01 6 25850078 25850078 A T SLC17A3 Nonsense_Mutation p.L409* 0.38 TCGA-F5-6814-01 6 25862239 25862239 A G SLC17A3 Missense_Mutation p.S108P 0.40 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 6 25916947 25916947 T C SLC17A2 Missense_Mutation p.Y299C 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 25917067 25917067 G T SLC17A2 Missense_Mutation p.S259Y 0.29 deleterious(0) probably_damaging(0.911) TCGA-F5-6814-01 6 25921455 25921455 G A SLC17A2 Silent p.F142F 0.36 TCGA-F5-6814-01 6 25926099 25926099 G A SLC17A2 5'UTR 0.21 TCGA-F5-6814-01 6 25972317 25972317 A G TRIM38 Missense_Mutation p.K243R 0.17 tolerated(0.1) benign(0.019) TCGA-F5-6814-01 6 26370573 26370573 G A BTN3A2 Missense_Mutation p.E153K 0.41 deleterious(0.02) benign(0.254) TCGA-F5-6814-01 6 26388497 26388497 G T BTN2A2 Missense_Mutation p.E233D 0.34 deleterious(0.01) possibly_damaging(0.796) TCGA-F5-6814-01 6 26393326 26393326 T G BTN2A2 3'UTR 0.35 TCGA-F5-6814-01 6 26413033 26413033 C T BTN3A1 Intron 0.26 TCGA-F5-6814-01 6 26431844 26431844 G A BTN2A3P RNA 0.19 TCGA-F5-6814-01 6 26448590 26448590 A G BTN3A3 Missense_Mutation p.K277R 0.12 tolerated(0.63) benign(0.002) TCGA-F5-6814-01 6 26545481 26545481 A C HMGN4 Missense_Mutation p.K16T 0.46 deleterious(0.05) probably_damaging(0.913) TCGA-F5-6814-01 6 27222822 27222822 C A PRSS16 Nonsense_Mutation p.S463* 0.33 TCGA-F5-6814-01 6 27278197 27278197 C T POM121L2 Missense_Mutation p.D585N 0.37 tolerated(0.07) benign(0.131) TCGA-F5-6814-01 6 27368703 27368703 G T ZNF391 Missense_Mutation p.R185I 0.38 tolerated(0.14) probably_damaging(0.977) TCGA-F5-6814-01 6 27369126 27369126 C A ZNF391 Missense_Mutation p.T326N 0.45 deleterious(0.01) possibly_damaging(0.504) TCGA-F5-6814-01 6 27783060 27783060 G A HIST1H2BM Missense_Mutation p.R80H 0.26 tolerated_low_confidence(0.15) benign(0.119) TCGA-F5-6814-01 6 27783120 27783120 G A HIST1H2BM Missense_Mutation p.R100H 0.50 deleterious_low_confidence(0.05) benign(0.082) TCGA-F5-6814-01 6 27879567 27879567 G T OR2B2 Missense_Mutation p.F177L 0.41 tolerated(0.06) possibly_damaging(0.791) TCGA-F5-6814-01 6 28094682 28094682 G A ZSCAN16 Missense_Mutation p.G170E 0.67 tolerated(0.27) possibly_damaging(0.578) TCGA-F5-6814-01 6 28134695 28134695 G T ZNF192P1 RNA 0.32 TCGA-F5-6814-01 6 28228716 28228716 A C NKAPL 3'UTR 0.37 TCGA-F5-6814-01 6 28297259 28297259 G A ZSCAN31 Silent p.L68L 0.22 TCGA-F5-6814-01 6 28297522 28297522 A C ZSCAN31 Intron 0.50 TCGA-F5-6814-01 6 28327454 28327454 G T ZKSCAN3 Nonsense_Mutation p.E31* 0.37 TCGA-F5-6814-01 6 28334001 28334001 G A ZKSCAN3 Missense_Mutation p.R519Q 0.13 tolerated(0.43) benign(0.168) TCGA-F5-6814-01 6 28402775 28402775 G T ZSCAN23 Missense_Mutation p.L213I 0.30 tolerated(0.39) benign(0.006) TCGA-F5-6814-01 6 28543210 28543210 T G SCAND3 Silent p.I424I 0.65 TCGA-F5-6814-01 6 28891276 28891276 C T TRIM27 Missense_Mutation p.G45D 0.42 tolerated(0.4) possibly_damaging(0.886) TCGA-F5-6814-01 6 28963643 28963643 C A ZNF311 Missense_Mutation p.R379I 0.45 deleterious(0) possibly_damaging(0.581) TCGA-F5-6814-01 6 28971968 28971968 G A ZNF311 5'UTR 0.40 TCGA-F5-6814-01 6 29054991 29054991 A C OR2B3 Missense_Mutation p.F12C 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 29275002 29275002 T C OR14J1 Missense_Mutation p.V179A 0.43 deleterious(0.02) possibly_damaging(0.73) TCGA-F5-6814-01 6 29364861 29364861 C T OR12D2 Missense_Mutation p.R129C 0.44 deleterious(0.04) benign(0.021) TCGA-F5-6814-01 6 29365162 29365162 C A OR12D2 Missense_Mutation p.S229Y 0.32 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 6 29394898 29394898 T C OR11A1 Missense_Mutation p.H174R 0.33 deleterious(0.05) benign(0.001) TCGA-F5-6814-01 6 29395394 29395394 C T OR11A1 Missense_Mutation p.E9K 0.36 tolerated(0.15) benign(0.001) TCGA-F5-6814-01 6 29429499 29429499 A G OR2H1 5'UTR 0.33 TCGA-F5-6814-01 6 29430493 29430493 C A OR2H1 Missense_Mutation p.A316D 0.18 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-F5-6814-01 6 29430764 29430764 C A OR2H1 3'UTR 0.09 TCGA-F5-6814-01 6 29431658 29431658 T G OR2H1 3'UTR 0.23 TCGA-F5-6814-01 6 29454808 29454808 A C MAS1L Missense_Mutation p.M291R 0.18 tolerated(0.35) benign(0.012) TCGA-F5-6814-01 6 2948859 2948859 T C SERPINB6 Silent p.E268E 0.46 TCGA-F5-6814-01 6 29523938 29523938 T G UBD Missense_Mutation p.T73P 0.13 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 6 29523944 29523944 C A UBD Nonsense_Mutation p.E71* 0.36 TCGA-F5-6814-01 6 29627226 29627226 C A MOG Missense_Mutation p.F73L 0.42 tolerated(0.12) possibly_damaging(0.658) TCGA-F5-6814-01 6 29635682 29635682 G T MOG Missense_Mutation p.E191D 0.36 deleterious(0.03) possibly_damaging(0.458) TCGA-F5-6814-01 6 29639150 29639150 C A MOG Intron 0.35 TCGA-F5-6814-01 6 29640712 29640712 A C ZFP57 Silent p.T392T 0.36 TCGA-F5-6814-01 6 29643825 29643825 G T ZFP57 Silent p.T45T 0.40 TCGA-F5-6814-01 6 29694262 29694262 A C HLA-F Intron 0.40 TCGA-F5-6814-01 6 29976096 29976096 A G ZNRD1-AS1 Intron 0.12 TCGA-F5-6814-01 6 30115516 30115516 A C TRIM40 Missense_Mutation p.K206T 0.41 deleterious(0.01) benign(0.154) TCGA-F5-6814-01 6 30154091 30154091 C T TRIM26 Silent p.E394E 0.19 TCGA-F5-6814-01 6 30570163 30570163 C T PPP1R10 Missense_Mutation p.E755K 0.33 deleterious_low_confidence(0.03) unknown(0) TCGA-F5-6814-01 6 30576646 30576646 C A PPP1R10 Silent p.T80T 0.08 TCGA-F5-6814-01 6 30672776 30672776 C A MDC1 Missense_Mutation p.R1395I 0.14 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 6 30691421 30691421 G T TUBB Missense_Mutation p.E194D 0.08 deleterious_low_confidence(0.03) probably_damaging(0.995) TCGA-F5-6814-01 6 30918345 30918345 G T DPCR1 Nonsense_Mutation p.E702* 0.13 TCGA-F5-6814-01 6 30918465 30918465 G T DPCR1 Nonsense_Mutation p.E742* 0.35 TCGA-F5-6814-01 6 30918660 30918660 A C DPCR1 Silent p.R807R 0.09 TCGA-F5-6814-01 6 30919566 30919566 G T DPCR1 Nonsense_Mutation p.E1109* 0.36 TCGA-F5-6814-01 6 31097413 31097413 A G PSORS1C1 Missense_Mutation p.T2A 0.31 benign(0.388) TCGA-F5-6814-01 6 3119619 3119619 G A BPHL Intron 0.54 TCGA-F5-6814-01 6 31238847 31238847 T A HLA-C Intron 0.12 TCGA-F5-6814-01 6 31380191 31380191 C A MICA Missense_Mutation p.L328I 0.17 tolerated_low_confidence(0.13) unknown(0) TCGA-F5-6814-01 6 31496871 31496871 G A MCCD1 Missense_Mutation p.G27D 0.43 tolerated(0.16) possibly_damaging(0.688) TCGA-F5-6814-01 6 31504214 31504214 A C DDX39B Intron 0.28 TCGA-F5-6814-01 6 31504351 31504351 C T DDX39B Missense_Mutation p.R181Q 0.34 tolerated(0.13) benign(0.008) TCGA-F5-6814-01 6 31637693 31637693 C T CSNK2B Missense_Mutation p.T213M 0.33 tolerated_low_confidence(0.13) benign(0.068) TCGA-F5-6814-01 6 31752490 31752490 T G VARS Missense_Mutation p.K450T 0.43 tolerated(0.07) probably_damaging(0.916) TCGA-F5-6814-01 6 31760238 31760238 C A VARS Missense_Mutation p.K239N 0.09 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 6 31777821 31777821 G T HSPA1L 3'UTR 0.26 TCGA-F5-6814-01 6 31797660 31797660 T C HSPA1B 3'UTR 0.08 TCGA-F5-6814-01 6 31914953 31914953 G A CFB Silent p.A658A 0.55 TCGA-F5-6814-01 6 32012877 32012877 G T TNXB Silent p.I40I 0.14 TCGA-F5-6814-01 6 32012952 32012952 G A TNXB Silent p.F15F 0.06 TCGA-F5-6814-01 6 32097489 32097489 C A FKBPL Missense_Mutation p.K23N 0.35 tolerated_low_confidence(0.07) benign(0.055) TCGA-F5-6814-01 6 32121319 32121319 G T PPT2 5'UTR 0.18 TCGA-F5-6814-01 6 32156046 32156046 C A PBX2 Missense_Mutation p.E177D 0.31 deleterious(0.03) possibly_damaging(0.496) TCGA-F5-6814-01 6 32188854 32188854 G A NOTCH4 Missense_Mutation p.R234W 0.43 tolerated(0.06) benign(0.015) TCGA-F5-6814-01 6 32190541 32190541 G A NOTCH4 Silent p.D66D 0.70 TCGA-F5-6814-01 6 32260934 32260934 C A C6orf10 Missense_Mutation p.D506Y 0.33 deleterious(0) possibly_damaging(0.587) TCGA-F5-6814-01 6 32339512 32339512 G A C6orf10 5'UTR 0.44 TCGA-F5-6814-01 6 32339527 32339527 C A C6orf10 5'UTR 0.36 TCGA-F5-6814-01 6 32709239 32709239 C A HLA-DQA2 Missense_Mutation p.L7M 0.17 tolerated(0.06) unknown(0) TCGA-F5-6814-01 6 32729698 32729698 A C HLA-DQB2 Missense_Mutation p.F35V 0.18 deleterious(0.01) possibly_damaging(0.867) TCGA-F5-6814-01 6 32782983 32782983 C T HLA-DOB Missense_Mutation p.D67N 0.14 deleterious(0) possibly_damaging(0.827) TCGA-F5-6814-01 6 32810002 32810002 G A PSMB8 Missense_Mutation p.S149L 0.26 deleterious(0) possibly_damaging(0.59) TCGA-F5-6814-01 6 32827349 32827349 C A PSMB9 3'UTR 0.17 TCGA-F5-6814-01 6 32917440 32917440 G A HLA-DMA Silent p.F200F 0.30 TCGA-F5-6814-01 6 33048540 33048540 C T HLA-DPB1 Silent p.F64F 0.22 TCGA-F5-6814-01 6 33156906 33156906 C T COL11A2 Missense_Mutation p.A98T 0.52 benign(0.393) TCGA-F5-6814-01 6 33163215 33163215 C T RXRB Missense_Mutation p.V429M 0.36 deleterious(0) possibly_damaging(0.531) TCGA-F5-6814-01 6 33177445 33177445 T C RING1 Missense_Mutation p.S41P 0.21 deleterious(0) possibly_damaging(0.51) TCGA-F5-6814-01 6 33235074 33235074 C T VPS52 Missense_Mutation p.R339H 0.28 deleterious(0.01) probably_damaging(0.953) TCGA-F5-6814-01 6 33414456 33414456 A C SYNGAP1 Missense_Mutation p.Q1229H 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 33422839 33422839 C T ZBTB9 5'UTR 0.11 TCGA-F5-6814-01 6 33424567 33424567 T C ZBTB9 3'UTR 0.41 TCGA-F5-6814-01 6 33608277 33608277 T C ITPR3 Missense_Mutation p.C36R 0.11 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 33644689 33644689 G A ITPR3 Missense_Mutation p.A1143T 0.31 tolerated(0.53) benign(0.001) TCGA-F5-6814-01 6 33695918 33695918 T C IP6K3 Missense_Mutation p.D120G 0.38 tolerated(0.39) benign(0) TCGA-F5-6814-01 6 34008437 34008437 C T GRM4 Silent p.A419A 0.23 TCGA-F5-6814-01 6 34029733 34029733 C T GRM4 Missense_Mutation p.R270H 0.12 deleterious(0.04) benign(0.011) TCGA-F5-6814-01 6 34389567 34389567 G A RPS10 Missense_Mutation p.P114S 0.50 deleterious(0.04) possibly_damaging(0.852) TCGA-F5-6814-01 6 34511830 34511830 C T SPDEF Missense_Mutation p.E135K 0.41 tolerated(0.09) possibly_damaging(0.625) TCGA-F5-6814-01 6 34826710 34826710 G T UHRF1BP1 Missense_Mutation p.M859I 0.31 tolerated(0.17) benign(0.002) TCGA-F5-6814-01 6 350861 350861 G T DUSP22 Missense_Mutation p.R183I 0.10 deleterious_low_confidence(0) probably_damaging(0.944) TCGA-F5-6814-01 6 35558968 35558968 T G FKBP5 Missense_Mutation p.K232T 0.30 deleterious(0.04) benign(0.161) TCGA-F5-6814-01 6 35716450 35716450 G A ARMC12 Missense_Mutation p.E303K 0.19 tolerated(0.34) benign(0.053) TCGA-F5-6814-01 6 35745343 35745343 G T CLPSL2 Missense_Mutation p.M64I 0.50 deleterious(0) benign(0.216) TCGA-F5-6814-01 6 35943262 35943262 A C SLC26A8 Missense_Mutation p.L393V 0.10 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 35987422 35987422 G A SLC26A8 Silent p.F21F 0.13 TCGA-F5-6814-01 6 36270181 36270181 G A PNPLA1 Missense_Mutation p.R440Q 0.53 tolerated_low_confidence(0.55) benign(0) TCGA-F5-6814-01 6 36359607 36359607 G T PXT1 Missense_Mutation p.F115L 0.42 tolerated_low_confidence(1) benign(0.001) TCGA-F5-6814-01 6 36442756 36442756 G T KCTD20 Missense_Mutation p.E117D 0.23 tolerated(0.15) benign(0.269) TCGA-F5-6814-01 6 36493406 36493406 C A STK38 Nonsense_Mutation p.E49* 0.36 TCGA-F5-6814-01 6 36564607 36564607 A T SRSF3 Missense_Mutation p.K23M 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-F5-6814-01 6 36652044 36652044 G A CDKN1A Missense_Mutation p.E56K 0.21 deleterious(0) probably_damaging(0.91) TCGA-F5-6814-01 6 36891224 36891224 G T C6orf89 3'UTR 0.41 TCGA-F5-6814-01 6 37186318 37186318 A C TMEM217 Missense_Mutation p.I163M 0.31 deleterious(0.03) possibly_damaging(0.661) TCGA-F5-6814-01 6 37403447 37403447 G T CMTR1 Missense_Mutation p.K14N 0.33 tolerated_low_confidence(0.16) benign(0.001) TCGA-F5-6814-01 6 37440242 37440242 G A CMTR1 Silent p.S556S 0.48 TCGA-F5-6814-01 6 37614993 37614993 C T MDGA1 Missense_Mutation p.D668N 0.18 tolerated(0.53) probably_damaging(0.99) TCGA-F5-6814-01 6 37620004 37620004 C T MDGA1 Silent p.E365E 0.27 TCGA-F5-6814-01 6 38029514 38029514 G A ZFAND3 Silent p.P86P 0.27 TCGA-F5-6814-01 6 38743590 38743590 G T DNAH8 Nonsense_Mutation p.G392* 0.13 TCGA-F5-6814-01 6 38743611 38743611 A G DNAH8 Missense_Mutation p.K399E 0.10 benign(0.049) TCGA-F5-6814-01 6 38775395 38775395 G A DNAH8 Missense_Mutation p.E837K 0.28 benign(0.005) TCGA-F5-6814-01 6 38775474 38775474 G T DNAH8 Missense_Mutation p.R863I 0.45 benign(0.016) TCGA-F5-6814-01 6 38831828 38831828 T C DNAH8 Silent p.L1947L 0.16 TCGA-F5-6814-01 6 38841128 38841128 C A DNAH8 Silent p.L2315L 0.39 TCGA-F5-6814-01 6 38843405 38843405 A C DNAH8 Missense_Mutation p.E2336D 0.23 benign(0.016) TCGA-F5-6814-01 6 38866096 38866096 C A DNAH8 Silent p.I2784I 0.48 TCGA-F5-6814-01 6 38867568 38867568 G A DNAH8 Missense_Mutation p.R2810Q 0.39 probably_damaging(0.974) TCGA-F5-6814-01 6 38881726 38881726 G A DNAH8 Missense_Mutation p.E3104K 0.40 benign(0.002) TCGA-F5-6814-01 6 38890939 38890939 G T DNAH8 Nonsense_Mutation p.E3373* 0.24 TCGA-F5-6814-01 6 38890968 38890968 A G DNAH8 Intron 0.35 TCGA-F5-6814-01 6 38950164 38950164 G A DNAH8 Missense_Mutation p.E4076K 0.24 probably_damaging(0.956) TCGA-F5-6814-01 6 38957919 38957919 C A DNAH8 Silent p.V4178V 0.31 TCGA-F5-6814-01 6 38980400 38980400 C A DNAH8 Missense_Mutation p.F4350L 0.34 probably_damaging(0.999) TCGA-F5-6814-01 6 38998170 38998175 TTCATT - DNAH8 3'UTR 0.36 TCGA-F5-6814-01 6 39158716 39158716 C T KCNK5 Missense_Mutation p.E484K 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 6 39159132 39159132 A G KCNK5 Missense_Mutation p.V345A 0.22 tolerated(0.1) benign(0.004) TCGA-F5-6814-01 6 39272322 39272322 G T KCNK17 Silent p.L154L 0.16 TCGA-F5-6814-01 6 39282719 39282719 G A KCNK16 3'UTR 0.38 TCGA-F5-6814-01 6 39304305 39304305 A C KIF6 3'UTR 0.11 TCGA-F5-6814-01 6 39328261 39328261 G A KIF6 Silent p.I664I 0.30 TCGA-F5-6814-01 6 39845980 39845980 C T DAAM2 Missense_Mutation p.L435F 0.21 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 6 39859132 39859132 C A DAAM2 Missense_Mutation p.P721T 0.42 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 6 41035157 41035157 G A OARD1 Missense_Mutation p.R126C 0.24 deleterious(0.01) possibly_damaging(0.774) TCGA-F5-6814-01 6 41129305 41129305 G A TREM2 Silent p.G29G 0.47 TCGA-F5-6814-01 6 41165920 41165920 G A TREML2 Silent p.G101G 0.18 TCGA-F5-6814-01 6 41196140 41196140 G A TREML4 5'UTR 0.39 TCGA-F5-6814-01 6 41196734 41196734 G A TREML4 Missense_Mutation p.E116K 0.26 tolerated(0.9) benign(0.006) TCGA-F5-6814-01 6 41658524 41658524 C T TFEB Silent p.P115P 0.27 TCGA-F5-6814-01 6 41773438 41773438 G A USP49 Silent p.F428F 0.26 TCGA-F5-6814-01 6 41899172 41899172 G A BYSL Missense_Mutation p.R248H 0.49 deleterious(0.02) probably_damaging(0.997) TCGA-F5-6814-01 6 41909295 41909295 C T CCND3 Silent p.L31L 0.47 TCGA-F5-6814-01 6 42179541 42179541 C A MRPS10 Nonsense_Mutation p.E101* 0.35 TCGA-F5-6814-01 6 42211043 42211043 G T TRERF1 Silent p.I934I 0.51 TCGA-F5-6814-01 6 42562043 42562043 G A UBR2 Splice_Site p.X177_splice 0.09 TCGA-F5-6814-01 6 42647470 42647470 A G UBR2 Missense_Mutation p.T1540A 0.13 tolerated(0.72) benign(0.002) TCGA-F5-6814-01 6 42666111 42666111 C A PRPH2 Missense_Mutation p.E321D 0.33 tolerated(0.55) benign(0.008) TCGA-F5-6814-01 6 42689593 42689593 C A PRPH2 Missense_Mutation p.Q160H 0.29 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 6 42832784 42832784 C T GLTSCR1L Missense_Mutation p.S947L 0.33 tolerated_low_confidence(0.35) benign(0.001) TCGA-F5-6814-01 6 42932089 42932089 T G PEX6 Missense_Mutation p.K976T 0.20 deleterious(0.01) possibly_damaging(0.696) TCGA-F5-6814-01 6 43006429 43006429 G A CUL7 Missense_Mutation p.A1565V 0.54 tolerated(0.16) benign(0.005) TCGA-F5-6814-01 6 43017358 43017358 C A CUL7 Nonsense_Mutation p.E622* 0.21 TCGA-F5-6814-01 6 43106981 43106981 C T PTK7 Silent p.I498I 0.32 TCGA-F5-6814-01 6 43153337 43153337 C A CUL9 Missense_Mutation p.H247N 0.54 deleterious(0) probably_damaging(0.977) TCGA-F5-6814-01 6 43155626 43155626 G A CUL9 Missense_Mutation p.R586Q 0.17 tolerated(0.76) benign(0.002) TCGA-F5-6814-01 6 43167714 43167714 T C CUL9 Silent p.H1068H 0.23 TCGA-F5-6814-01 6 43306509 43306509 A C ZNF318 Missense_Mutation p.S1743A 0.14 benign(0.058) TCGA-F5-6814-01 6 43307839 43307839 C A ZNF318 Missense_Mutation p.E1299D 0.20 benign(0.034) TCGA-F5-6814-01 6 43316182 43316182 G T ZNF318 Silent p.I984I 0.31 TCGA-F5-6814-01 6 43322744 43322744 C T ZNF318 Silent p.P776P 0.41 TCGA-F5-6814-01 6 43589130 43589130 C T GTPBP2 3'UTR 0.20 TCGA-F5-6814-01 6 43590537 43590537 T G GTPBP2 Missense_Mutation p.I434L 0.25 tolerated(0.35) benign(0.02) TCGA-F5-6814-01 6 43593130 43593130 G A GTPBP2 Silent p.F225F 0.33 TCGA-F5-6814-01 6 43612968 43612968 C A RSPH9 Missense_Mutation p.L45I 0.23 deleterious(0.03) possibly_damaging(0.801) TCGA-F5-6814-01 6 43618269 43618269 G T RSPH9 Nonsense_Mutation p.E129* 0.43 TCGA-F5-6814-01 6 43646345 43646345 T C MRPS18A Silent p.T54T 0.18 TCGA-F5-6814-01 6 44218914 44218914 A G HSP90AB1 Missense_Mutation p.M363V 0.16 deleterious(0.02) benign(0.059) TCGA-F5-6814-01 6 44219312 44219312 G T HSP90AB1 Missense_Mutation p.K427N 0.48 tolerated(0.13) benign(0.038) TCGA-F5-6814-01 6 44227997 44227997 G A NFKBIE Missense_Mutation p.A407V 0.43 tolerated(0.07) possibly_damaging(0.903) TCGA-F5-6814-01 6 44797460 44797460 G T SUPT3H 3'UTR 0.44 TCGA-F5-6814-01 6 46107529 46107529 C A ENPP4 Missense_Mutation p.T70K 0.32 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 46129122 46129122 G T ENPP5 Missense_Mutation p.Q459K 0.18 tolerated(0.06) possibly_damaging(0.772) TCGA-F5-6814-01 6 46133195 46133195 C T ENPP5 Missense_Mutation p.R312Q 0.34 deleterious(0) probably_damaging(0.924) TCGA-F5-6814-01 6 46216525 46216525 G A RCAN2 Nonsense_Mutation p.R112* 0.43 TCGA-F5-6814-01 6 46626615 46626615 C T SLC25A27 Intron 0.24 TCGA-F5-6814-01 6 46658299 46658299 A G TDRD6 Missense_Mutation p.T812A 0.09 tolerated(0.23) benign(0.002) TCGA-F5-6814-01 6 46660865 46660865 T G TDRD6 Missense_Mutation p.I1667R 0.36 deleterious(0) possibly_damaging(0.897) TCGA-F5-6814-01 6 46661441 46661441 C A TDRD6 Missense_Mutation p.S1859Y 0.31 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 6 46661831 46661831 C T TDRD6 Missense_Mutation p.S1989L 0.27 tolerated(0.08) benign(0.017) TCGA-F5-6814-01 6 46678271 46678271 T G PLA2G7 Intron 0.60 TCGA-F5-6814-01 6 46678377 46678377 C A PLA2G7 Nonsense_Mutation p.E228* 0.51 TCGA-F5-6814-01 6 46874495 46874495 T G GPR116 Missense_Mutation p.K2T 0.10 tolerated(0.08) possibly_damaging(0.451) TCGA-F5-6814-01 6 46976726 46976726 C A GPR110 Missense_Mutation p.Q815H 0.12 tolerated(0.09) benign(0.056) TCGA-F5-6814-01 6 47573906 47573906 G A CD2AP Missense_Mutation p.V475I 0.21 tolerated(0.95) benign(0.003) TCGA-F5-6814-01 6 47626779 47626779 T G GPR111 Missense_Mutation p.F53C 0.30 deleterious_low_confidence(0) possibly_damaging(0.759) TCGA-F5-6814-01 6 47976785 47976785 A C PTCHD4 Missense_Mutation p.D164E 0.18 tolerated(0.29) probably_damaging(0.992) TCGA-F5-6814-01 6 486560 486560 G T EXOC2 3'UTR 0.24 TCGA-F5-6814-01 6 486623 486623 A C EXOC2 3'UTR 0.17 TCGA-F5-6814-01 6 4892004 4892004 C T CDYL Missense_Mutation p.R28W 0.09 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 6 49425486 49425486 T G MUT Missense_Mutation p.E224A 0.44 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-F5-6814-01 6 49427165 49427165 C A MUT Missense_Mutation p.K5N 0.60 deleterious_low_confidence(0.01) benign(0.021) TCGA-F5-6814-01 6 49456084 49456084 T C CENPQ Missense_Mutation p.V166A 0.13 tolerated(0.2) probably_damaging(0.99) TCGA-F5-6814-01 6 49489419 49489419 A C GLYATL3 Silent p.I125I 0.33 TCGA-F5-6814-01 6 49585890 49585890 G T RHAG Missense_Mutation p.S128Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 6 49754076 49754076 C A PGK2 Missense_Mutation p.K275N 0.09 deleterious(0.05) benign(0.018) TCGA-F5-6814-01 6 49754337 49754337 G T PGK2 Missense_Mutation p.F188L 0.41 tolerated(0.15) possibly_damaging(0.575) TCGA-F5-6814-01 6 49754650 49754650 T C PGK2 Missense_Mutation p.E84G 0.13 tolerated(0.05) benign(0.131) TCGA-F5-6814-01 6 49754915 49754915 G T PGK2 5'UTR 0.15 TCGA-F5-6814-01 6 49814301 49814301 A G CRISP1 Missense_Mutation p.S123P 0.14 deleterious(0) probably_damaging(0.975) TCGA-F5-6814-01 6 5109555 5109555 G A LYRM4 3'UTR 0.52 TCGA-F5-6814-01 6 5109703 5109703 G T LYRM4 Nonsense_Mutation p.S77* 0.33 TCGA-F5-6814-01 6 51612928 51612928 C A PKHD1 Missense_Mutation p.E3162D 0.33 tolerated(0.13) possibly_damaging(0.898) TCGA-F5-6814-01 6 52146946 52146946 C T MCM3 Missense_Mutation p.R188H 0.17 deleterious(0.03) benign(0.082) TCGA-F5-6814-01 6 52269624 52269624 G A PAQR8 3'UTR 0.18 TCGA-F5-6814-01 6 52615389 52615389 T C GSTA2 Missense_Mutation p.I219V 0.33 tolerated(0.38) benign(0.005) TCGA-F5-6814-01 6 52656682 52656682 C T GSTA1 Missense_Mutation p.E215K 0.26 tolerated(0.58) benign(0.001) TCGA-F5-6814-01 6 52767173 52767173 G T GSTA3 Silent p.L81L 0.16 TCGA-F5-6814-01 6 52843346 52843346 G A GSTA4 Silent p.F197F 0.33 TCGA-F5-6814-01 6 52849290 52849290 A C GSTA4 Missense_Mutation p.I129R 0.16 tolerated(0.22) benign(0.003) TCGA-F5-6814-01 6 52878664 52878664 A C ICK Nonsense_Mutation p.Y316* 0.36 TCGA-F5-6814-01 6 52993190 52993190 G A GCM1 Silent p.Y375Y 0.38 TCGA-F5-6814-01 6 53133769 53133769 G A ELOVL5 3'UTR 0.45 TCGA-F5-6814-01 6 53133959 53133959 T C ELOVL5 Missense_Mutation p.N316S 0.08 tolerated(0.07) benign(0.019) TCGA-F5-6814-01 6 53379122 53379122 C A GCLC Missense_Mutation p.K211N 0.14 tolerated(0.22) benign(0.14) TCGA-F5-6814-01 6 53519457 53519457 G A KLHL31 Missense_Mutation p.S205L 0.28 deleterious(0.01) benign(0.051) TCGA-F5-6814-01 6 53519561 53519561 C T KLHL31 Silent p.E170E 0.32 TCGA-F5-6814-01 6 53519662 53519662 A G KLHL31 Silent p.L137L 0.29 TCGA-F5-6814-01 6 53764582 53764582 T C LRRC1 Missense_Mutation p.V227A 0.15 tolerated(0.05) benign(0.423) TCGA-F5-6814-01 6 54025551 54025551 C A MLIP Missense_Mutation p.S283Y 0.13 tolerated(0.06) probably_damaging(0.999) TCGA-F5-6814-01 6 54735256 54735256 T G FAM83B Missense_Mutation p.V71G 0.27 deleterious(0.01) benign(0.158) TCGA-F5-6814-01 6 54792383 54792383 G T FAM83B Missense_Mutation p.Q229H 0.08 deleterious(0.05) probably_damaging(0.999) TCGA-F5-6814-01 6 55145214 55145214 G A HCRTR2 Silent p.A359A 0.11 TCGA-F5-6814-01 6 55623858 55623858 G T BMP5 Missense_Mutation p.S387Y 0.14 deleterious(0.04) probably_damaging(0.912) TCGA-F5-6814-01 6 55923987 55923987 C A COL21A1 Nonsense_Mutation p.E888* 0.44 TCGA-F5-6814-01 6 55924819 55924819 T G COL21A1 Missense_Mutation p.K869Q 0.09 tolerated(0.05) benign(0) TCGA-F5-6814-01 6 55966267 55966267 C A COL21A1 Intron 0.36 TCGA-F5-6814-01 6 56335051 56335051 C T DST Missense_Mutation p.A4828T 0.12 probably_damaging(0.999) TCGA-F5-6814-01 6 56417300 56417300 C T DST Silent p.K2807K 0.35 TCGA-F5-6814-01 6 56418277 56418277 T C DST Missense_Mutation p.K2482E 0.33 benign(0.004) TCGA-F5-6814-01 6 56426949 56426949 A C DST Missense_Mutation p.F2062L 0.29 benign(0.012) TCGA-F5-6814-01 6 56434806 56434806 C A DST Nonsense_Mutation p.E1953* 0.31 TCGA-F5-6814-01 6 56466264 56466264 C A DST Intron 0.27 TCGA-F5-6814-01 6 56467718 56467718 C A DST Intron 0.19 TCGA-F5-6814-01 6 56468781 56468781 C A DST Intron 0.24 TCGA-F5-6814-01 6 56469465 56469465 C A DST Intron 0.21 TCGA-F5-6814-01 6 56470698 56470698 G T DST Intron 0.12 TCGA-F5-6814-01 6 56472519 56472519 C A DST Intron 0.14 TCGA-F5-6814-01 6 56473935 56473935 T G DST Intron 0.41 TCGA-F5-6814-01 6 56479262 56479262 C A DST Missense_Mutation p.K1113N 0.35 probably_damaging(0.999) TCGA-F5-6814-01 6 56480482 56480482 C A DST Intron 0.42 TCGA-F5-6814-01 6 56481394 56481394 C A DST Intron 0.19 TCGA-F5-6814-01 6 56481573 56481573 A T DST Intron 0.33 TCGA-F5-6814-01 6 56481832 56481832 C T DST Intron 0.41 TCGA-F5-6814-01 6 56482009 56482009 C A DST Intron 0.33 TCGA-F5-6814-01 6 56483785 56483785 T G DST Intron 0.41 TCGA-F5-6814-01 6 56484276 56484276 C A DST Intron 0.39 TCGA-F5-6814-01 6 56510919 56510919 T G DST 5'Flank 0.36 TCGA-F5-6814-01 6 56917757 56917757 A C KIAA1586 Missense_Mutation p.I154L 0.17 tolerated(0.23) possibly_damaging(0.6) TCGA-F5-6814-01 6 56919087 56919087 A C KIAA1586 Missense_Mutation p.K597T 0.31 tolerated(0.16) benign(0.003) TCGA-F5-6814-01 6 56999628 56999628 T G ZNF451 Missense_Mutation p.F221C 0.28 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 6 57015673 57015673 A C ZNF451 Intron 0.32 TCGA-F5-6814-01 6 57055235 57055235 C A RAB23 3'UTR 0.37 TCGA-F5-6814-01 6 57072429 57072429 G A RAB23 Nonsense_Mutation p.R80* 0.26 TCGA-F5-6814-01 6 57246859 57246859 C T PRIM2 Nonsense_Mutation p.R196* 0.10 TCGA-F5-6814-01 6 57512692 57512692 A G PRIM2 3'UTR 0.15 TCGA-F5-6814-01 6 5999313 5999313 C T NRN1 Missense_Mutation p.E109K 0.31 deleterious(0.02) possibly_damaging(0.469) TCGA-F5-6814-01 6 6152106 6152106 C T F13A1 Missense_Mutation p.R662Q 0.47 tolerated(0.35) benign(0) TCGA-F5-6814-01 6 62611258 62611258 G A KHDRBS2 Missense_Mutation p.R168C 0.17 tolerated(0.18) benign(0.139) TCGA-F5-6814-01 6 6305654 6305654 G T F13A1 Missense_Mutation p.F83L 0.22 deleterious(0) possibly_damaging(0.599) TCGA-F5-6814-01 6 64356557 64356557 T G PHF3 Missense_Mutation p.F34C 0.28 deleterious(0) probably_damaging(0.95) TCGA-F5-6814-01 6 64394100 64394100 A C PHF3 Missense_Mutation p.K159N 0.09 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 64408346 64408346 G T PHF3 Missense_Mutation p.D945Y 0.38 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 6 65300568 65300568 G T EYS Missense_Mutation p.S1731Y 0.07 tolerated_low_confidence(0.16) benign(0.022) TCGA-F5-6814-01 6 66042128 66042128 C A EYS Intron 0.25 TCGA-F5-6814-01 6 66042306 66042306 T C EYS Intron 0.38 TCGA-F5-6814-01 6 66200531 66200531 A G EYS Missense_Mutation p.I273T 0.07 tolerated(0.47) possibly_damaging(0.846) TCGA-F5-6814-01 6 66204555 66204555 C T EYS Splice_Site p.X250_splice 0.48 TCGA-F5-6814-01 6 66205280 66205280 A C EYS Missense_Mutation p.I8M 0.24 tolerated_low_confidence(0.07) benign(0.034) TCGA-F5-6814-01 6 69349104 69349104 A C BAI3 Missense_Mutation p.L179F 0.20 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 6 69666664 69666664 C T BAI3 Silent p.G496G 0.39 TCGA-F5-6814-01 6 69703662 69703662 T G BAI3 Missense_Mutation p.I579M 0.41 tolerated(0.11) benign(0.168) TCGA-F5-6814-01 6 69723935 69723935 C A BAI3 Missense_Mutation p.F645L 0.10 deleterious(0) possibly_damaging(0.492) TCGA-F5-6814-01 6 69943248 69943248 G A BAI3 Silent p.T849T 0.27 TCGA-F5-6814-01 6 70386091 70386091 A C LMBRD1 Missense_Mutation p.S528A 0.22 tolerated(0.2) possibly_damaging(0.661) TCGA-F5-6814-01 6 70646767 70646767 G A COL19A1 Missense_Mutation p.E280K 0.11 tolerated(0.31) unknown(0) TCGA-F5-6814-01 6 70877921 70877921 T G COL19A1 Missense_Mutation p.I817S 0.35 deleterious(0.02) benign(0.268) TCGA-F5-6814-01 6 70948965 70948965 T G COL9A1 Missense_Mutation p.K702Q 0.08 probably_damaging(0.999) TCGA-F5-6814-01 6 71010054 71010054 C A COL9A1 Nonsense_Mutation p.E42* 0.08 TCGA-F5-6814-01 6 71236066 71236066 A C FAM135A Missense_Mutation p.Q1093H 0.09 deleterious(0.04) benign(0.003) TCGA-F5-6814-01 6 71569109 71569109 T C SMAP1 Intron 0.41 TCGA-F5-6814-01 6 72806670 72806670 T C RIMS1 Silent p.F88F 0.30 TCGA-F5-6814-01 6 72957829 72957829 C T RIMS1 Missense_Mutation p.S747F 0.33 deleterious(0) probably_damaging(0.958) TCGA-F5-6814-01 6 7326968 7326968 G T CAGE1 3'UTR 0.31 TCGA-F5-6814-01 6 7330118 7330118 T C CAGE1 Silent p.S814S 0.17 TCGA-F5-6814-01 6 7373458 7373458 T G CAGE1 Missense_Mutation p.K532Q 0.29 tolerated(0.15) probably_damaging(0.978) TCGA-F5-6814-01 6 7379080 7379080 C A CAGE1 Missense_Mutation p.D153Y 0.10 deleterious(0) possibly_damaging(0.53) TCGA-F5-6814-01 6 7387364 7387364 G A CAGE1 Missense_Mutation p.P15S 0.45 tolerated_low_confidence(0.1) probably_damaging(0.986) TCGA-F5-6814-01 6 73933985 73933985 T A KHDC1L Missense_Mutation p.T67S 0.37 deleterious(0.03) probably_damaging(0.98) TCGA-F5-6814-01 6 73985203 73985203 C A KHDC1 Intron 0.48 TCGA-F5-6814-01 6 74063066 74063066 C T DPPA5 Missense_Mutation p.E110K 0.34 tolerated(0.1) benign(0.013) TCGA-F5-6814-01 6 74063740 74063740 C T DPPA5 Missense_Mutation p.R43Q 0.19 tolerated(0.39) benign(0.016) TCGA-F5-6814-01 6 74138448 74138448 C A MB21D1 Nonsense_Mutation p.E401* 0.32 TCGA-F5-6814-01 6 74228467 74228467 A C EEF1A1 Silent p.T242T 0.38 TCGA-F5-6814-01 6 74440173 74440173 G T CD109 Missense_Mutation p.R128I 0.46 deleterious(0.02) benign(0.028) TCGA-F5-6814-01 6 74493446 74493446 G T CD109 Nonsense_Mutation p.E708* 0.34 TCGA-F5-6814-01 6 7576623 7576623 G T DSP Missense_Mutation p.Q909H 0.13 probably_damaging(0.993) TCGA-F5-6814-01 6 7580906 7580906 A G DSP Missense_Mutation p.N1495D 0.14 benign(0.02) TCGA-F5-6814-01 6 75827140 75827140 C T COL12A1 Missense_Mutation p.E2493K 0.26 possibly_damaging(0.658) TCGA-F5-6814-01 6 75904613 75904613 G T COL12A1 Missense_Mutation p.H42N 0.09 benign(0.245) TCGA-F5-6814-01 6 76023723 76023723 C A FILIP1 Nonsense_Mutation p.E609* 0.07 TCGA-F5-6814-01 6 76023940 76023940 T C FILIP1 Silent p.E536E 0.09 TCGA-F5-6814-01 6 76024506 76024506 T C FILIP1 Missense_Mutation p.T348A 0.08 tolerated(0.15) benign(0.001) TCGA-F5-6814-01 6 76343322 76343322 C A SENP6 Missense_Mutation p.A78D 0.19 tolerated(0.11) benign(0.282) TCGA-F5-6814-01 6 76373182 76373182 A C SENP6 Missense_Mutation p.K314N 0.12 deleterious(0.02) benign(0.11) TCGA-F5-6814-01 6 76386754 76386754 G T SENP6 Nonsense_Mutation p.E544* 0.30 TCGA-F5-6814-01 6 76388350 76388350 T G SENP6 Missense_Mutation p.F634V 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-F5-6814-01 6 79724815 79724815 C T PHIP Missense_Mutation p.R503Q 0.33 tolerated(0.1) probably_damaging(0.921) TCGA-F5-6814-01 6 79726270 79726270 C T PHIP Missense_Mutation p.R409H 0.45 deleterious(0.01) possibly_damaging(0.906) TCGA-F5-6814-01 6 79770398 79770398 T C PHIP Silent p.L109L 0.10 TCGA-F5-6814-01 6 80197457 80197457 T C LCA5 Missense_Mutation p.K453R 0.09 tolerated(0.27) benign(0.014) TCGA-F5-6814-01 6 80635970 80635970 G T ELOVL4 Missense_Mutation p.L77I 0.08 tolerated(0.39) benign(0.027) TCGA-F5-6814-01 6 80744831 80744831 A G TTK Missense_Mutation p.S582G 0.42 deleterious(0) benign(0.284) TCGA-F5-6814-01 6 80749453 80749453 T C TTK Missense_Mutation p.L724S 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 82949992 82949992 A C IBTK Missense_Mutation p.L71R 0.47 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 83728759 83728759 C T UBE3D Missense_Mutation p.D315N 0.11 tolerated(0.25) benign(0.01) TCGA-F5-6814-01 6 83900642 83900642 C T PGM3 Silent p.T58T 0.19 TCGA-F5-6814-01 6 84117518 84117518 T A ME1 Missense_Mutation p.N61Y 0.12 tolerated(0.08) benign(0.053) TCGA-F5-6814-01 6 84233489 84233489 A C PRSS35 Missense_Mutation p.N110T 0.11 tolerated(0.19) benign(0.091) TCGA-F5-6814-01 6 84233858 84233858 G T PRSS35 Missense_Mutation p.R233I 0.35 deleterious(0.04) benign(0.209) TCGA-F5-6814-01 6 84234148 84234148 G A PRSS35 Missense_Mutation p.E330K 0.59 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 6 84285760 84285760 G T SNAP91 Missense_Mutation p.S771Y 0.32 deleterious(0.03) probably_damaging(0.988) TCGA-F5-6814-01 6 84311154 84311154 G T SNAP91 Missense_Mutation p.S387Y 0.30 deleterious(0.01) unknown(0) TCGA-F5-6814-01 6 84765089 84765089 A C MRAP2 Missense_Mutation p.N18H 0.19 tolerated(0.25) possibly_damaging(0.629) TCGA-F5-6814-01 6 84772691 84772691 G T MRAP2 Missense_Mutation p.K69N 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 6 84856429 84856429 G A KIAA1009 Nonsense_Mutation p.R1283* 0.25 TCGA-F5-6814-01 6 84871620 84871620 A C KIAA1009 Missense_Mutation p.L841V 0.39 tolerated(0.12) benign(0.131) TCGA-F5-6814-01 6 84896304 84896304 A C KIAA1009 Missense_Mutation p.F383V 0.40 tolerated(1) benign(0) TCGA-F5-6814-01 6 84925057 84925057 G A KIAA1009 Missense_Mutation p.S149L 0.09 deleterious(0) possibly_damaging(0.827) TCGA-F5-6814-01 6 85457806 85457806 C A TBX18 Splice_Site p.X258_splice 0.28 TCGA-F5-6814-01 6 86201722 86201722 G A NT5E Missense_Mutation p.R463Q 0.39 tolerated(0.18) benign(0.041) TCGA-F5-6814-01 6 87725173 87725173 T G HTR1E Missense_Mutation p.L41V 0.14 tolerated(0.1) benign(0.023) TCGA-F5-6814-01 6 87726062 87726062 C A HTR1E Missense_Mutation p.S337Y 0.44 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 87726338 87726338 T G HTR1E 3'UTR 0.13 TCGA-F5-6814-01 6 87943100 87943100 T G ZNF292 Missense_Mutation p.L199R 0.40 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 6 87943227 87943227 T C ZNF292 Silent p.N241N 0.08 TCGA-F5-6814-01 6 87966751 87966751 A C ZNF292 Missense_Mutation p.K1135T 0.15 tolerated(0.09) probably_damaging(0.911) TCGA-F5-6814-01 6 87969153 87969153 G A ZNF292 Missense_Mutation p.E1936K 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 6 87993973 87993973 C A GJB7 Missense_Mutation p.V220F 0.39 tolerated_low_confidence(0.54) benign(0) TCGA-F5-6814-01 6 87994310 87994310 C A GJB7 Missense_Mutation p.K107N 0.47 tolerated(0.09) possibly_damaging(0.632) TCGA-F5-6814-01 6 88074753 88074753 T C C6orf163 Missense_Mutation p.M210T 0.09 tolerated(0.63) benign(0.004) TCGA-F5-6814-01 6 88128069 88128069 C T C6ORF165 Missense_Mutation p.P259S 0.31 tolerated(0.96) benign(0.014) TCGA-F5-6814-01 6 88138455 88138455 G A C6ORF165 Missense_Mutation p.E358K 0.22 tolerated(0.72) benign(0.009) TCGA-F5-6814-01 6 88170877 88170877 A T C6ORF165 Silent p.I544I 0.10 TCGA-F5-6814-01 6 88234279 88234279 T C RARS2 Missense_Mutation p.T324A 0.18 deleterious(0) possibly_damaging(0.732) TCGA-F5-6814-01 6 89387998 89387998 T G RNGTT Intron 0.25 TCGA-F5-6814-01 6 89808225 89808225 G T SRSF12 3'UTR 0.45 TCGA-F5-6814-01 6 89862873 89862873 A G PM20D2 Silent p.R242R 0.09 TCGA-F5-6814-01 6 89871511 89871511 A G PM20D2 Missense_Mutation p.D353G 0.07 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 89872038 89872038 C A PM20D2 3'UTR 0.50 TCGA-F5-6814-01 6 89888604 89888604 C A GABRR1 Missense_Mutation p.R442I 0.27 tolerated(0.17) probably_damaging(0.952) TCGA-F5-6814-01 6 89890147 89890147 C T GABRR1 Missense_Mutation p.R337H 0.26 deleterious(0.02) probably_damaging(0.994) TCGA-F5-6814-01 6 89890198 89890198 G A GABRR1 Missense_Mutation p.T320M 0.43 deleterious(0.03) probably_damaging(0.986) TCGA-F5-6814-01 6 89967503 89967503 G A GABRR2 Silent p.G428G 0.22 TCGA-F5-6814-01 6 89978846 89978846 C T GABRR2 Silent p.K132K 0.33 TCGA-F5-6814-01 6 90039551 90039551 T C UBE2J1 Silent p.S268S 0.31 TCGA-F5-6814-01 6 90045025 90045025 A C UBE2J1 Missense_Mutation p.F185C 0.44 deleterious(0) possibly_damaging(0.896) TCGA-F5-6814-01 6 90097113 90097113 A C RRAGD Missense_Mutation p.I115M 0.33 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 6 90357792 90357792 G A MDN1 Missense_Mutation p.R5452C 0.26 unknown(0) TCGA-F5-6814-01 6 90357795 90357795 G T MDN1 Missense_Mutation p.L5451I 0.18 unknown(0) TCGA-F5-6814-01 6 90359829 90359829 G A MDN1 Nonsense_Mutation p.R5374* 0.43 TCGA-F5-6814-01 6 90363903 90363903 G A MDN1 Missense_Mutation p.S5214L 0.39 unknown(0) TCGA-F5-6814-01 6 90383867 90383867 G A MDN1 Silent p.V4401V 0.29 TCGA-F5-6814-01 6 90435060 90435060 C T MDN1 Missense_Mutation p.R1843Q 0.35 probably_damaging(1) TCGA-F5-6814-01 6 90571867 90571867 C T CASP8AP2 RNA 0.41 TCGA-F5-6814-01 6 90573832 90573832 C A CASP8AP2 RNA 0.22 TCGA-F5-6814-01 6 90576889 90576889 G A CASP8AP2 RNA 0.38 TCGA-F5-6814-01 6 90604447 90604447 C A GJA10 Missense_Mutation p.S87Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 6 91261878 91261878 T G MAP3K7 Missense_Mutation p.K253Q 0.30 tolerated(0.33) benign(0.005) TCGA-F5-6814-01 6 96651190 96651190 C A FUT9 Missense_Mutation p.F53L 0.42 tolerated(0.69) benign(0.003) TCGA-F5-6814-01 6 96651589 96651589 G T FUT9 Missense_Mutation p.E186D 0.40 tolerated(1) benign(0.001) TCGA-F5-6814-01 6 96653014 96653014 C A FUT9 3'UTR 0.10 TCGA-F5-6814-01 6 96655139 96655139 G T FUT9 3'UTR 0.33 TCGA-F5-6814-01 6 96658062 96658062 A C FUT9 3'UTR 0.08 TCGA-F5-6814-01 6 96658591 96658591 T G FUT9 3'UTR 0.15 TCGA-F5-6814-01 6 96658996 96658996 G A FUT9 3'UTR 0.22 TCGA-F5-6814-01 6 96659312 96659312 T C FUT9 3'UTR 0.14 TCGA-F5-6814-01 6 96660347 96660347 T G FUT9 3'UTR 0.18 TCGA-F5-6814-01 6 96663047 96663047 A G FUT9 3'UTR 0.24 TCGA-F5-6814-01 6 97246441 97246441 G T GPR63 Silent p.S389S 0.35 TCGA-F5-6814-01 6 97561970 97561970 T A KLHL32 Silent p.V313V 0.28 TCGA-F5-6814-01 6 97587271 97587271 G A KLHL32 3'UTR 0.53 TCGA-F5-6814-01 6 97627302 97627302 T G MMS22L Missense_Mutation p.N840H 0.27 deleterious(0.01) possibly_damaging(0.76) TCGA-F5-6814-01 6 97702546 97702546 T G MMS22L Silent p.R336R 0.11 TCGA-F5-6814-01 6 97729207 97729207 T G MMS22L Missense_Mutation p.N66H 0.16 tolerated(0.14) possibly_damaging(0.804) TCGA-F5-6814-01 6 99283587 99283587 C T POU3F2 Missense_Mutation p.R280W 0.38 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 6 99285226 99285226 C A POU3F2 3'UTR 0.38 TCGA-F5-6814-01 6 99285385 99285385 G T POU3F2 3'UTR 0.36 TCGA-F5-6814-01 6 99286488 99286488 T G POU3F2 3'UTR 0.35 TCGA-F5-6814-01 6 99286508 99286508 A C POU3F2 3'UTR 0.20 TCGA-F5-6814-01 6 99286547 99286547 A C POU3F2 3'UTR 0.25 TCGA-F5-6814-01 6 99286604 99286604 G A POU3F2 3'UTR 0.53 TCGA-F5-6814-01 6 99323369 99323369 C A FBXL4 Missense_Mutation p.A542S 0.17 deleterious(0.01) benign(0.046) TCGA-F5-6814-01 6 99893792 99893792 G T USP45 Nonsense_Mutation p.S619* 0.33 TCGA-F5-6814-01 6 99998887 99998887 G T CCNC Missense_Mutation p.F140L 0.21 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 100004870 100004870 G A ZCWPW1 Missense_Mutation p.S349F 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 100061245 100061245 G T C7orf61 Nonsense_Mutation p.S43* 0.31 TCGA-F5-6814-01 7 100072039 100072039 T G TSC22D4 Missense_Mutation p.S263R 0.18 tolerated(0.05) benign(0.157) TCGA-F5-6814-01 7 100190536 100190536 C A FBXO24 Missense_Mutation p.S268Y 0.45 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-F5-6814-01 7 100190558 100190558 G T FBXO24 Missense_Mutation p.K275N 0.22 tolerated_low_confidence(0.08) benign(0.403) TCGA-F5-6814-01 7 100190594 100190594 C T FBXO24 Silent p.I287I 0.38 TCGA-F5-6814-01 7 100193277 100193277 G A FBXO24 Missense_Mutation p.R423K 0.54 tolerated(0.11) benign(0.22) TCGA-F5-6814-01 7 100345261 100345261 A G ZAN Missense_Mutation p.I340M 0.42 probably_damaging(0.991) TCGA-F5-6814-01 7 100349409 100349409 G A ZAN Missense_Mutation p.E561K 0.11 benign(0.188) TCGA-F5-6814-01 7 100350251 100350251 A G ZAN Silent p.E841E 0.07 TCGA-F5-6814-01 7 100364209 100364209 G T ZAN Missense_Mutation p.R1511I 0.43 unknown(0) TCGA-F5-6814-01 7 100373083 100373083 G T ZAN Missense_Mutation p.K1970N 0.29 unknown(0) TCGA-F5-6814-01 7 100680530 100680530 A G MUC17 Missense_Mutation p.T1945A 0.45 unknown(0) TCGA-F5-6814-01 7 100680579 100680579 C A MUC17 Missense_Mutation p.S1961Y 0.35 unknown(0) TCGA-F5-6814-01 7 100691327 100691327 C T MUC17 Missense_Mutation p.L4156F 0.21 unknown(0) TCGA-F5-6814-01 7 100771900 100771900 G T SERPINE1 Nonsense_Mutation p.E76* 0.58 TCGA-F5-6814-01 7 100842019 100842019 G A MOGAT3 Silent p.F127F 0.50 TCGA-F5-6814-01 7 100958463 100958463 G A RABL5 Silent p.N170N 0.39 TCGA-F5-6814-01 7 1015131 1015131 C A COX19 Missense_Mutation p.M5I 0.33 tolerated(0.11) probably_damaging(0.991) TCGA-F5-6814-01 7 1024874 1024874 G A CYP2W1 Missense_Mutation p.R187Q 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 102604019 102604019 G A FBXL13 Missense_Mutation p.R229C 0.25 deleterious(0) benign(0.126) TCGA-F5-6814-01 7 102604113 102604113 C T FBXL13 Splice_Site p.X198_splice 0.17 TCGA-F5-6814-01 7 102665617 102665617 C A FBXL13 Missense_Mutation p.A130S 0.36 tolerated(0.89) benign(0) TCGA-F5-6814-01 7 102760075 102760075 C A NAPEPLD Missense_Mutation p.R297I 0.33 deleterious(0.02) benign(0.145) TCGA-F5-6814-01 7 102852610 102852610 T A DPY19L2P2 Intron 0.31 TCGA-F5-6814-01 7 102939127 102939127 C T PMPCB Missense_Mutation p.S71L 0.43 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 7 102952623 102952623 C A PMPCB Intron 0.16 TCGA-F5-6814-01 7 102952739 102952739 T G PMPCB 3'UTR 0.29 TCGA-F5-6814-01 7 102956511 102956511 C A DNAJC2 Missense_Mutation p.M484I 0.17 tolerated(1) benign(0.097) TCGA-F5-6814-01 7 102957403 102957403 C T DNAJC2 Missense_Mutation p.R434Q 0.19 tolerated(0.36) benign(0.037) TCGA-F5-6814-01 7 102957426 102957426 T G DNAJC2 Missense_Mutation p.K426N 0.17 deleterious(0.02) benign(0.07) TCGA-F5-6814-01 7 102967005 102967005 A C DNAJC2 Missense_Mutation p.F186C 0.22 deleterious(0) probably_damaging(0.928) TCGA-F5-6814-01 7 102967025 102967025 G A DNAJC2 Silent p.F179F 0.24 TCGA-F5-6814-01 7 103029818 103029818 G A SLC26A5 Silent p.F455F 0.32 TCGA-F5-6814-01 7 103032106 103032106 C T SLC26A5 Missense_Mutation p.R399Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 7 103162497 103162497 G A RELN Missense_Mutation p.A2547V 0.38 deleterious(0.01) probably_damaging(0.986) TCGA-F5-6814-01 7 103197502 103197502 G T RELN Missense_Mutation p.L1907I 0.19 tolerated(0.06) possibly_damaging(0.854) TCGA-F5-6814-01 7 103230096 103230096 G T RELN Missense_Mutation p.D1364E 0.11 tolerated(0.15) benign(0.392) TCGA-F5-6814-01 7 103276809 103276809 A C RELN Missense_Mutation p.F726V 0.08 tolerated(0.12) benign(0.293) TCGA-F5-6814-01 7 103341444 103341444 G T RELN Nonsense_Mutation p.S272* 0.35 TCGA-F5-6814-01 7 103824463 103824463 C T ORC5 Missense_Mutation p.R251H 0.43 tolerated(0.97) benign(0.003) TCGA-F5-6814-01 7 104715088 104715088 A C KMT2E Splice_Site p.X186_splice 0.20 TCGA-F5-6814-01 7 104722190 104722190 G T KMT2E Missense_Mutation p.S435I 0.38 deleterious(0.02) possibly_damaging(0.727) TCGA-F5-6814-01 7 104746968 104746968 G T KMT2E Splice_Site p.X866_splice 0.32 TCGA-F5-6814-01 7 104750725 104750725 A T KMT2E Splice_Site p.X1252_splice 0.10 TCGA-F5-6814-01 7 104752940 104752940 A C KMT2E Missense_Mutation p.Q1579H 0.21 deleterious_low_confidence(0) benign(0.216) TCGA-F5-6814-01 7 104753531 104753531 G T KMT2E Missense_Mutation p.Q1776H 0.09 deleterious_low_confidence(0.05) possibly_damaging(0.507) TCGA-F5-6814-01 7 104758461 104758461 G A SRPK2 Nonsense_Mutation p.R642* 0.21 TCGA-F5-6814-01 7 104800980 104800980 G A SRPK2 Missense_Mutation p.R199C 0.08 deleterious(0) possibly_damaging(0.739) TCGA-F5-6814-01 7 105111266 105111266 C A PUS7 Nonsense_Mutation p.E423* 0.20 TCGA-F5-6814-01 7 105143005 105143005 C T PUS7 Missense_Mutation p.E198K 0.33 tolerated(0.16) benign(0.017) TCGA-F5-6814-01 7 105177149 105177149 A C RINT1 Missense_Mutation p.K76Q 0.33 tolerated(0.29) benign(0.051) TCGA-F5-6814-01 7 105260655 105260655 C A ATXN7L1 Missense_Mutation p.Q503H 0.44 tolerated(0.08) probably_damaging(0.981) TCGA-F5-6814-01 7 105641956 105641956 C T CDHR3 Silent p.I254I 0.28 TCGA-F5-6814-01 7 105908967 105908967 T G NAMPT Missense_Mutation p.K229T 0.21 tolerated(0.09) benign(0.086) TCGA-F5-6814-01 7 106513165 106513165 G T PIK3CG Missense_Mutation p.R690I 0.43 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 107115746 107115746 T G GPR22 Missense_Mutation p.I414S 0.23 tolerated(0.35) benign(0.001) TCGA-F5-6814-01 7 107215734 107215734 T G DUS4L Missense_Mutation p.F153C 0.12 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 7 107340604 107340604 A C SLC26A4 Missense_Mutation p.K564T 0.19 tolerated(0.22) benign(0.403) TCGA-F5-6814-01 7 107355901 107355901 C T SLC26A4 3'UTR 0.45 TCGA-F5-6814-01 7 107355982 107355982 C A SLC26A4 3'UTR 0.48 TCGA-F5-6814-01 7 107408088 107408088 T G SLC26A3 Missense_Mutation p.E736A 0.37 tolerated(0.05) benign(0.08) TCGA-F5-6814-01 7 107417119 107417119 C A SLC26A3 Missense_Mutation p.R516I 0.23 deleterious(0.01) probably_damaging(0.971) TCGA-F5-6814-01 7 107429977 107429977 T C SLC26A3 Missense_Mutation p.I243V 0.32 tolerated(0.28) possibly_damaging(0.644) TCGA-F5-6814-01 7 107434303 107434303 C A SLC26A3 Missense_Mutation p.R52I 0.35 tolerated(0.17) benign(0.275) TCGA-F5-6814-01 7 107791187 107791187 A C NRCAM Intron 0.30 TCGA-F5-6814-01 7 107807498 107807498 C A NRCAM Nonsense_Mutation p.E1112* 0.29 TCGA-F5-6814-01 7 107816942 107816942 G T NRCAM Missense_Mutation p.F1028L 0.18 tolerated(1) benign(0.003) TCGA-F5-6814-01 7 108112801 108112801 C T PNPLA8 3'UTR 0.07 TCGA-F5-6814-01 7 108119660 108119660 G T PNPLA8 Missense_Mutation p.S681Y 0.07 tolerated(0.41) benign(0.007) TCGA-F5-6814-01 7 108155664 108155664 G A PNPLA8 Missense_Mutation p.P91L 0.13 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-F5-6814-01 7 11068359 11068359 A C PHF14 Missense_Mutation p.S457R 0.09 deleterious(0.01) possibly_damaging(0.773) TCGA-F5-6814-01 7 110764006 110764006 C A LRRN3 Nonsense_Mutation p.S393* 0.33 TCGA-F5-6814-01 7 110764872 110764872 A C LRRN3 Missense_Mutation p.N682H 0.19 deleterious(0.04) benign(0.003) TCGA-F5-6814-01 7 11076707 11076707 G T PHF14 Nonsense_Mutation p.E657* 0.34 TCGA-F5-6814-01 7 111387493 111387493 T G DOCK4 Missense_Mutation p.M1466L 0.12 tolerated(0.33) benign(0.026) TCGA-F5-6814-01 7 111509710 111509710 C T DOCK4 Missense_Mutation p.D677N 0.37 tolerated(0.07) possibly_damaging(0.776) TCGA-F5-6814-01 7 111540470 111540470 G A DOCK4 Silent p.F480F 0.42 TCGA-F5-6814-01 7 111927147 111927147 C A ZNF277 Intron 0.20 TCGA-F5-6814-01 7 111970239 111970239 G T ZNF277 Nonsense_Mutation p.E257* 0.53 TCGA-F5-6814-01 7 111979906 111979906 C T ZNF277 Silent p.H325H 0.33 TCGA-F5-6814-01 7 113517794 113517794 G T PPP1R3A Missense_Mutation p.S1118Y 0.32 deleterious(0) possibly_damaging(0.854) TCGA-F5-6814-01 7 113520001 113520001 G A PPP1R3A Silent p.S382S 0.19 TCGA-F5-6814-01 7 113522333 113522333 C A PPP1R3A Missense_Mutation p.E275D 0.38 tolerated(0.46) benign(0.004) TCGA-F5-6814-01 7 113558697 113558697 G T PPP1R3A Missense_Mutation p.L119I 0.12 deleterious(0.01) possibly_damaging(0.53) TCGA-F5-6814-01 7 113558879 113558879 G A PPP1R3A Missense_Mutation p.S58F 0.32 deleterious(0.01) possibly_damaging(0.635) TCGA-F5-6814-01 7 11415410 11415410 A T THSD7A 3'UTR 0.41 TCGA-F5-6814-01 7 114178380 114178380 G A FOXP2 Intron 0.11 TCGA-F5-6814-01 7 114298281 114298281 G A FOXP2 Missense_Mutation p.R501Q 0.19 deleterious(0.01) unknown(0) TCGA-F5-6814-01 7 114304378 114304378 A G FOXP2 Missense_Mutation p.I655M 0.24 tolerated(0.29) benign(0.039) TCGA-F5-6814-01 7 11441522 11441522 G T THSD7A Silent p.G1437G 0.14 TCGA-F5-6814-01 7 11485883 11485883 G A THSD7A Missense_Mutation p.P957S 0.25 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 7 115750760 115750760 A G TFEC Splice_Site p.X66_splice 0.15 TCGA-F5-6814-01 7 116403291 116403291 C A MET Nonsense_Mutation p.S869* 0.11 TCGA-F5-6814-01 7 116418997 116418997 C T MET Nonsense_Mutation p.R1188* 0.46 TCGA-F5-6814-01 7 11675887 11675887 C T THSD7A Missense_Mutation p.E298K 0.26 tolerated(0.05) benign(0.027) TCGA-F5-6814-01 7 116776196 116776196 A G ST7 Missense_Mutation p.K258E 0.15 tolerated(0.27) possibly_damaging(0.582) TCGA-F5-6814-01 7 116955138 116955138 C A WNT2 Missense_Mutation p.R192I 0.44 deleterious(0) possibly_damaging(0.908) TCGA-F5-6814-01 7 117066990 117066990 C A ASZ1 Splice_Site p.X36_splice 0.11 TCGA-F5-6814-01 7 117282581 117282581 C T CFTR Silent p.I1269I 0.44 TCGA-F5-6814-01 7 117306973 117306973 G T CFTR Missense_Mutation p.E1418D 0.31 tolerated(0.43) benign(0) TCGA-F5-6814-01 7 119915122 119915122 G A KCND2 Missense_Mutation p.E146K 0.36 tolerated(0.09) possibly_damaging(0.842) TCGA-F5-6814-01 7 119915425 119915425 C T KCND2 Missense_Mutation p.R247C 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 120740060 120740060 T G CPED1 Missense_Mutation p.L277W 0.09 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 120767179 120767179 T C CPED1 Silent p.N390N 0.09 TCGA-F5-6814-01 7 120767239 120767239 C T CPED1 Silent p.L410L 0.27 TCGA-F5-6814-01 7 120906348 120906348 C T CPED1 Missense_Mutation p.T793M 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 121000113 121000113 C T FAM3C Missense_Mutation p.D151N 0.29 deleterious(0) probably_damaging(0.962) TCGA-F5-6814-01 7 121019069 121019069 C A FAM3C Splice_Site p.X5_splice 0.36 TCGA-F5-6814-01 7 121608021 121608021 A C PTPRZ1 Missense_Mutation p.K47N 0.38 tolerated(0.19) probably_damaging(0.999) TCGA-F5-6814-01 7 121653457 121653457 G A PTPRZ1 Missense_Mutation p.E1453K 0.37 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-F5-6814-01 7 121653490 121653490 A C PTPRZ1 Missense_Mutation p.N1464H 0.23 deleterious_low_confidence(0.05) possibly_damaging(0.606) TCGA-F5-6814-01 7 121659233 121659233 C T PTPRZ1 Silent p.S1633S 0.32 TCGA-F5-6814-01 7 121679611 121679611 A C PTPRZ1 Missense_Mutation p.N1869T 0.14 tolerated(0.77) benign(0.001) TCGA-F5-6814-01 7 121691550 121691550 G T PTPRZ1 Missense_Mutation p.K2051N 0.38 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 7 121731796 121731796 C A AASS Missense_Mutation p.M659I 0.36 tolerated(0.07) benign(0.098) TCGA-F5-6814-01 7 121732923 121732923 C A AASS Missense_Mutation p.D617Y 0.34 deleterious(0.02) benign(0.33) TCGA-F5-6814-01 7 121733115 121733115 C A AASS Nonsense_Mutation p.E585* 0.30 TCGA-F5-6814-01 7 121738593 121738593 C A AASS Missense_Mutation p.K522N 0.29 tolerated(0.33) benign(0.219) TCGA-F5-6814-01 7 121766507 121766507 G A AASS Missense_Mutation p.R132C 0.57 deleterious(0.01) probably_damaging(0.986) TCGA-F5-6814-01 7 121773596 121773596 G A AASS Missense_Mutation p.S62L 0.21 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 7 121985661 121985661 G T CADPS2 Silent p.V1193V 0.21 TCGA-F5-6814-01 7 122787365 122787365 C A SLC13A1 Splice_Site p.X221_splice 0.30 TCGA-F5-6814-01 7 123101636 123101636 A C IQUB Missense_Mutation p.F594L 0.23 tolerated(1) benign(0.039) TCGA-F5-6814-01 7 123136907 123136907 C A IQUB Missense_Mutation p.E359D 0.09 tolerated(0.74) benign(0.002) TCGA-F5-6814-01 7 123143002 123143002 G A IQUB Missense_Mutation p.T288M 0.22 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 7 123152151 123152151 C T IQUB Missense_Mutation p.V82I 0.42 tolerated_low_confidence(0.34) benign(0.003) TCGA-F5-6814-01 7 123302965 123302965 C T LMOD2 Missense_Mutation p.P442L 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 123346345 123346345 C T WASL Missense_Mutation p.R141Q 0.26 deleterious(0) unknown(0) TCGA-F5-6814-01 7 123508830 123508830 G A HYAL4 Missense_Mutation p.R168K 0.11 tolerated(0.75) benign(0.083) TCGA-F5-6814-01 7 123593829 123593829 G T SPAM1 Missense_Mutation p.D69Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 12409561 12409561 A G VWDE Missense_Mutation p.F791L 0.31 tolerated(0.41) benign(0.001) TCGA-F5-6814-01 7 12428783 12428783 T C VWDE Missense_Mutation p.T149A 0.37 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 126086316 126086316 C A GRM8 Missense_Mutation p.Q847H 0.08 deleterious(0.01) possibly_damaging(0.739) TCGA-F5-6814-01 7 126409928 126409928 T G GRM8 Missense_Mutation p.N450H 0.52 deleterious(0.02) possibly_damaging(0.776) TCGA-F5-6814-01 7 127013875 127013875 G A ZNF800 Silent p.I505I 0.34 TCGA-F5-6814-01 7 127238528 127238528 G A FSCN3 Missense_Mutation p.E334K 0.45 deleterious(0.04) possibly_damaging(0.527) TCGA-F5-6814-01 7 12727978 12727978 G T ARL4A Missense_Mutation p.K33N 0.18 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 7 12728761 12728761 G A ARL4A 3'UTR 0.40 TCGA-F5-6814-01 7 12729136 12729136 T G ARL4A 3'UTR 0.39 TCGA-F5-6814-01 7 127670216 127670216 C T LRRC4 Missense_Mutation p.E160K 0.09 tolerated(0.17) benign(0.408) TCGA-F5-6814-01 7 127729557 127729557 A G SND1 Missense_Mutation p.D812G 0.17 tolerated(0.18) benign(0.008) TCGA-F5-6814-01 7 128119555 128119555 C T METTL2B Silent p.Y182Y 0.19 TCGA-F5-6814-01 7 128446357 128446357 A G CCDC136 Missense_Mutation p.N386D 0.33 tolerated(0.14) benign(0.228) TCGA-F5-6814-01 7 128489403 128489403 G A FLNC Missense_Mutation p.R1657Q 0.33 tolerated(0.11) benign(0.166) TCGA-F5-6814-01 7 128518631 128518631 G A KCP RNA 0.30 TCGA-F5-6814-01 7 128546339 128546339 A G AC025594.1 5'Flank 0.17 TCGA-F5-6814-01 7 128640556 128640556 G T TNPO3 Missense_Mutation p.T313N 0.23 tolerated(0.34) benign(0.018) TCGA-F5-6814-01 7 128850335 128850335 G A SMO Missense_Mutation p.S533N 0.27 deleterious(0.02) benign(0.394) TCGA-F5-6814-01 7 129317479 129317479 C T NRF1 Nonsense_Mutation p.R116* 0.41 TCGA-F5-6814-01 7 129688954 129688954 A C ZC3HC1 Silent p.V59V 0.23 TCGA-F5-6814-01 7 129813672 129813672 A G TMEM209 Silent p.N484N 0.46 TCGA-F5-6814-01 7 130020953 130020953 G A CPA1 Missense_Mutation p.R27Q 0.19 deleterious(0.04) probably_damaging(1) TCGA-F5-6814-01 7 130040093 130040093 G T CEP41 Missense_Mutation p.L254I 0.15 deleterious(0.01) probably_damaging(0.965) TCGA-F5-6814-01 7 130042621 130042621 C T CEP41 Missense_Mutation p.E148K 0.38 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 7 131122688 131122688 A C MKLN1 Missense_Mutation p.N369H 0.43 tolerated(0.12) possibly_damaging(0.615) TCGA-F5-6814-01 7 131817937 131817937 C A PLXNA4 Missense_Mutation p.K1820N 0.37 deleterious(0.04) possibly_damaging(0.848) TCGA-F5-6814-01 7 132709346 132709346 C T CHCHD3 Missense_Mutation p.A71T 0.29 deleterious(0.05) possibly_damaging(0.877) TCGA-F5-6814-01 7 132959871 132959871 G A EXOC4 Missense_Mutation p.R74H 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-F5-6814-01 7 133041122 133041122 G T EXOC4 Nonsense_Mutation p.E268* 0.21 TCGA-F5-6814-01 7 133041316 133041316 G A EXOC4 Silent p.E332E 0.19 TCGA-F5-6814-01 7 133859344 133859344 T G LRGUK Missense_Mutation p.L326V 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 7 133906586 133906586 G A LRGUK Silent p.S633S 0.20 TCGA-F5-6814-01 7 134127392 134127392 G T AKR1B1 3'UTR 0.24 TCGA-F5-6814-01 7 134346785 134346785 G A BPGM Missense_Mutation p.E176K 0.21 tolerated(0.33) possibly_damaging(0.562) TCGA-F5-6814-01 7 134618702 134618703 - A CALD1 Frame_Shift_Ins p.H397Tfs*24 0.24 TCGA-F5-6814-01 7 134730577 134730577 G T AGBL3 Nonsense_Mutation p.E586* 0.41 TCGA-F5-6814-01 7 134916773 134916773 G T STRA8 Nonsense_Mutation p.E15* 0.50 TCGA-F5-6814-01 7 135073595 135073595 G T CNOT4 Intron 0.37 TCGA-F5-6814-01 7 135123072 135123072 C T CNOT4 Missense_Mutation p.R3H 0.47 tolerated_low_confidence(0.75) benign(0.006) TCGA-F5-6814-01 7 135261103 135261103 G A NUP205 Silent p.A143A 0.10 TCGA-F5-6814-01 7 135269649 135269649 T G NUP205 Missense_Mutation p.F371C 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 135301843 135301843 C T NUP205 Nonsense_Mutation p.R1180* 0.25 TCGA-F5-6814-01 7 135357545 135357545 G T C7orf73 Missense_Mutation p.Q20H 0.15 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-F5-6814-01 7 135378967 135378967 G A SLC13A4 Silent p.L346L 0.36 TCGA-F5-6814-01 7 135614465 135614465 A G MTPN 3'UTR 0.12 TCGA-F5-6814-01 7 136700307 136700307 C A CHRM2 Missense_Mutation p.S232Y 0.30 deleterious(0.01) possibly_damaging(0.492) TCGA-F5-6814-01 7 136701287 136701287 C A CHRM2 3'UTR 0.49 TCGA-F5-6814-01 7 136701367 136701367 T G CHRM2 3'UTR 0.10 TCGA-F5-6814-01 7 136938212 136938212 G A PTN Silent p.G96G 0.28 TCGA-F5-6814-01 7 137263038 137263038 C T DGKI Missense_Mutation p.R559Q 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-F5-6814-01 7 137293805 137293805 T G DGKI Missense_Mutation p.E358D 0.18 tolerated(0.29) benign(0.01) TCGA-F5-6814-01 7 137600658 137600658 C T CREB3L2 Silent p.P140P 0.22 TCGA-F5-6814-01 7 137761356 137761356 C T AKR1D1 Missense_Mutation p.S31L 0.29 tolerated(0.2) benign(0.001) TCGA-F5-6814-01 7 138305859 138305859 C T SVOPL Missense_Mutation p.A429T 0.17 deleterious(0.04) benign(0.292) TCGA-F5-6814-01 7 138417730 138417730 G T ATP6V0A4 Nonsense_Mutation p.C600* 0.13 TCGA-F5-6814-01 7 138455944 138455944 G T ATP6V0A4 Missense_Mutation p.L17I 0.32 tolerated(0.19) probably_damaging(0.997) TCGA-F5-6814-01 7 138583777 138583777 C T KIAA1549 Silent p.S1257S 0.37 TCGA-F5-6814-01 7 138603753 138603753 C A KIAA1549 Nonsense_Mutation p.E207* 0.16 TCGA-F5-6814-01 7 138603961 138603961 G T KIAA1549 Silent p.I137I 0.27 TCGA-F5-6814-01 7 138713585 138713585 T C ZC3HAV1L Missense_Mutation p.K208R 0.10 tolerated(0.21) benign(0.079) TCGA-F5-6814-01 7 138732287 138732287 C A ZC3HAV1 3'UTR 0.17 TCGA-F5-6814-01 7 138732433 138732433 C T ZC3HAV1 Silent p.S872S 0.24 TCGA-F5-6814-01 7 138872182 138872182 T G TTC26 Missense_Mutation p.F484V 0.11 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 7 138958059 138958059 G T UBN2 Nonsense_Mutation p.E578* 0.08 TCGA-F5-6814-01 7 138958792 138958792 C A UBN2 Missense_Mutation p.L649M 0.12 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 7 13940381 13940381 C T ETV1 Silent p.E398E 0.28 TCGA-F5-6814-01 7 139416003 139416003 G A HIPK2 Silent p.F277F 0.46 TCGA-F5-6814-01 7 139416581 139416581 C T HIPK2 Missense_Mutation p.V85I 0.19 tolerated(0.44) benign(0) TCGA-F5-6814-01 7 13946225 13946225 C A ETV1 Splice_Site p.X314_splice 0.36 TCGA-F5-6814-01 7 139653194 139653194 G A TBXAS1 Missense_Mutation p.E207K 0.13 deleterious(0.01) benign(0.005) TCGA-F5-6814-01 7 140154391 140154391 C T MKRN1 Missense_Mutation p.E459K 0.14 tolerated(0.13) benign(0.015) TCGA-F5-6814-01 7 140285449 140285449 C A DENND2A Missense_Mutation p.K395N 0.54 tolerated(0.08) benign(0.027) TCGA-F5-6814-01 7 140487360 140487360 G A BRAF Missense_Mutation p.R389C 0.13 tolerated(0.1) benign(0.001) TCGA-F5-6814-01 7 140500260 140500260 G T BRAF Missense_Mutation p.F294L 0.28 tolerated(0.31) benign(0.104) TCGA-F5-6814-01 7 141341169 141341169 T C AGK Missense_Mutation p.L283P 0.46 deleterious(0) probably_damaging(0.928) TCGA-F5-6814-01 7 141408668 141408668 C T WEE2 Missense_Mutation p.S37L 0.24 tolerated(0.82) benign(0) TCGA-F5-6814-01 7 141418887 141418887 G T WEE2 Nonsense_Mutation p.E201* 0.42 TCGA-F5-6814-01 7 141424066 141424066 T G WEE2 Missense_Mutation p.I404M 0.12 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 7 141424991 141424991 C T WEE2 Missense_Mutation p.L463F 0.18 deleterious(0.01) probably_damaging(1) TCGA-F5-6814-01 7 141629836 141629836 A G CLEC5A 3'UTR 0.24 TCGA-F5-6814-01 7 141673076 141673076 C T TAS2R38 Silent p.R138R 0.30 TCGA-F5-6814-01 7 141759687 141759687 C A MGAM Missense_Mutation p.P1327H 0.43 deleterious(0.02) benign(0.027) TCGA-F5-6814-01 7 141763322 141763322 C T MGAM Silent p.F1427F 0.30 TCGA-F5-6814-01 7 14188609 14188609 T G DGKB 3'UTR 0.50 TCGA-F5-6814-01 7 14188756 14188756 T G DGKB Nonstop_Mutation p.*805Yext*13 0.25 TCGA-F5-6814-01 7 141952089 141952089 T G PRSS58 Missense_Mutation p.K226N 0.38 tolerated(0.05) benign(0.004) TCGA-F5-6814-01 7 142481848 142481848 C A PRSS3P2 RNA 0.77 TCGA-F5-6814-01 7 142571468 142571468 G A TRPV6 Silent p.A507A 0.37 TCGA-F5-6814-01 7 142627257 142627257 G A TRPV5 Missense_Mutation p.A82V 0.25 tolerated(0.09) possibly_damaging(0.689) TCGA-F5-6814-01 7 142643339 142643339 C T KEL Silent p.A423A 0.75 TCGA-F5-6814-01 7 142880876 142880876 T G TAS2R39 Missense_Mutation p.F122C 0.22 deleterious(0.05) benign(0.006) TCGA-F5-6814-01 7 142881499 142881499 C A TAS2R39 Missense_Mutation p.H330N 0.29 deleterious(0.04) benign(0.248) TCGA-F5-6814-01 7 143027929 143027929 C A CLCN1 Missense_Mutation p.F306L 0.47 deleterious(0.02) possibly_damaging(0.842) TCGA-F5-6814-01 7 143036630 143036630 G T CLCN1 Nonsense_Mutation p.E500* 0.39 TCGA-F5-6814-01 7 143079930 143079930 C A ZYX Missense_Mutation p.P180T 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 7 143140694 143140694 G T TAS2R60 Missense_Mutation p.R50I 0.37 tolerated(0.06) possibly_damaging(0.785) TCGA-F5-6814-01 7 143141121 143141121 C A TAS2R60 Missense_Mutation p.F192L 0.41 tolerated(0.29) benign(0.11) TCGA-F5-6814-01 7 143453650 143453650 A G CTAGE6 Missense_Mutation p.S368P 0.06 deleterious(0.03) benign(0.16) TCGA-F5-6814-01 7 143453772 143453772 G T CTAGE6 Missense_Mutation p.S327Y 0.16 tolerated(0.13) benign(0.132) TCGA-F5-6814-01 7 143573386 143573386 C T FAM115A Missense_Mutation p.E106K 0.56 tolerated(0.93) benign(0.001) TCGA-F5-6814-01 7 143747947 143747947 T C OR2A5 Silent p.C151C 0.38 TCGA-F5-6814-01 7 143771990 143771990 G T OR2A25 Missense_Mutation p.K226N 0.42 deleterious(0.01) benign(0.033) TCGA-F5-6814-01 7 143826249 143826249 G A OR2A14 Missense_Mutation p.R15Q 0.40 deleterious(0) benign(0.004) TCGA-F5-6814-01 7 143884204 143884204 C T ARHGEF35 Missense_Mutation p.A425T 0.19 tolerated(0.44) benign(0.018) TCGA-F5-6814-01 7 144097370 144097370 C A NOBOX Missense_Mutation p.D294Y 0.32 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 146805403 146805403 G T CNTNAP2 Nonsense_Mutation p.E239* 0.29 TCGA-F5-6814-01 7 146829588 146829588 C T CNTNAP2 Silent p.I445I 0.37 TCGA-F5-6814-01 7 148080861 148080861 C T CNTNAP2 Missense_Mutation p.A1199V 0.33 tolerated(0.34) benign(0.005) TCGA-F5-6814-01 7 148112673 148112673 A G CNTNAP2 Missense_Mutation p.T1321A 0.17 tolerated(0.31) benign(0.074) TCGA-F5-6814-01 7 148454196 148454196 G A CUL1 Missense_Mutation p.R146H 0.10 deleterious(0.02) benign(0.035) TCGA-F5-6814-01 7 148515171 148515171 C T EZH2 Silent p.E346E 0.11 TCGA-F5-6814-01 7 148801979 148801979 C A ZNF425 Missense_Mutation p.K328N 0.25 tolerated(0.28) benign(0.08) TCGA-F5-6814-01 7 148815408 148815408 A G ZNF425 Silent p.Y17Y 0.29 TCGA-F5-6814-01 7 148904528 148904528 C T ZNF282 Silent p.P266P 0.25 TCGA-F5-6814-01 7 149422512 149422512 G T KRBA1 Missense_Mutation p.Q411H 0.32 tolerated(0.09) probably_damaging(0.977) TCGA-F5-6814-01 7 149430652 149430652 G T KRBA1 Missense_Mutation p.R869I 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-F5-6814-01 7 149468113 149468113 C A ZNF467 Missense_Mutation p.E3D 0.27 deleterious(0.01) possibly_damaging(0.643) TCGA-F5-6814-01 7 149516593 149516593 G A SSPO RNA 0.32 TCGA-F5-6814-01 7 149523828 149523828 C A SSPO RNA 0.40 TCGA-F5-6814-01 7 149526040 149526040 C T SSPO RNA 0.49 TCGA-F5-6814-01 7 149576536 149576536 G A ATP6V0E2 Missense_Mutation p.D138N 0.29 tolerated_low_confidence(0.05) benign(0.044) TCGA-F5-6814-01 7 150093708 150093708 C G ZNF775 Missense_Mutation p.Q47E 0.18 deleterious(0.03) benign(0.078) TCGA-F5-6814-01 7 150217127 150217127 G T GIMAP7 Missense_Mutation p.S22I 0.30 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 7 150217460 150217460 G A GIMAP7 Missense_Mutation p.R133H 0.23 tolerated(0.15) benign(0.243) TCGA-F5-6814-01 7 150269677 150269677 A C GIMAP4 Missense_Mutation p.E173D 0.16 tolerated(0.61) benign(0.016) TCGA-F5-6814-01 7 150554862 150554862 T G AOC1 Missense_Mutation p.F435C 0.09 deleterious(0.01) probably_damaging(0.913) TCGA-F5-6814-01 7 150733168 150733168 G C ABCB8 Missense_Mutation p.G341A 0.23 tolerated(0.78) benign(0.002) TCGA-F5-6814-01 7 150752166 150752166 G A CDK5 Missense_Mutation p.R200W 0.11 deleterious(0.04) possibly_damaging(0.867) TCGA-F5-6814-01 7 150884327 150884327 G A ASB10 5'Flank 0.20 TCGA-F5-6814-01 7 150915676 150915676 T C ABCF2 Missense_Mutation p.N400D 0.38 tolerated(0.79) benign(0.013) TCGA-F5-6814-01 7 150921073 150921073 G A ABCF2 Silent p.V165V 0.11 TCGA-F5-6814-01 7 151046287 151046287 T C NUB1 Silent p.I106I 0.23 TCGA-F5-6814-01 7 151065005 151065005 G A NUB1 Missense_Mutation p.R373Q 0.10 tolerated(0.33) benign(0.014) TCGA-F5-6814-01 7 151092978 151092978 G A WDR86 Missense_Mutation p.P204S 0.30 tolerated(0.33) benign(0.024) TCGA-F5-6814-01 7 151262463 151262463 A C PRKAG2 Missense_Mutation p.V469G 0.19 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 7 151841825 151841825 A G KMT2C Silent p.N4772N 0.27 TCGA-F5-6814-01 7 151851508 151851508 G A KMT2C Nonsense_Mutation p.R3995* 0.42 TCGA-F5-6814-01 7 152055755 152055755 C T KMT2C Missense_Mutation p.R56Q 0.11 possibly_damaging(0.678) TCGA-F5-6814-01 7 1521078 1521078 C T INTS1 Silent p.S1250S 0.56 TCGA-F5-6814-01 7 152357797 152357797 G A XRCC2 Missense_Mutation p.S37L 0.20 tolerated(0.66) benign(0.169) TCGA-F5-6814-01 7 1526600 1526600 G A INTS1 Silent p.D928D 0.42 TCGA-F5-6814-01 7 1532704 1532704 C T INTS1 Missense_Mutation p.D703N 0.44 deleterious(0.01) benign(0.021) TCGA-F5-6814-01 7 154720465 154720465 G A PAXIP1-AS2 Missense_Mutation p.G36D 0.25 probably_damaging(0.97) TCGA-F5-6814-01 7 154747268 154747268 C T PAXIP1 Missense_Mutation p.E875K 0.26 tolerated(0.09) unknown(0) TCGA-F5-6814-01 7 155301657 155301657 C A CNPY1 Missense_Mutation p.D26Y 0.25 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 7 155301672 155301672 C T CNPY1 Missense_Mutation p.A21T 0.32 tolerated(0.11) probably_damaging(0.94) TCGA-F5-6814-01 7 155473516 155473516 G T RBM33 Nonsense_Mutation p.E161* 0.22 TCGA-F5-6814-01 7 155604599 155604599 A C SHH Missense_Mutation p.F73C 0.30 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 7 156451648 156451648 G T RNF32 Intron 0.47 TCGA-F5-6814-01 7 156521355 156521355 G T LMBR1 Missense_Mutation p.L300I 0.17 tolerated(0.37) benign(0.032) TCGA-F5-6814-01 7 15666472 15666472 C A MEOX2 Nonsense_Mutation p.E197* 0.23 TCGA-F5-6814-01 7 156745171 156745171 C A NOM1 Missense_Mutation p.L331I 0.34 tolerated(0.34) benign(0.029) TCGA-F5-6814-01 7 156752597 156752597 A C NOM1 Missense_Mutation p.K454T 0.37 deleterious(0.01) possibly_damaging(0.719) TCGA-F5-6814-01 7 156758991 156758991 A C NOM1 Missense_Mutation p.R687S 0.44 deleterious(0) probably_damaging(0.983) TCGA-F5-6814-01 7 156759716 156759716 A G NOM1 Missense_Mutation p.N743S 0.22 tolerated(0.59) benign(0.03) TCGA-F5-6814-01 7 157060353 157060353 G T UBE3C Missense_Mutation p.M1052I 0.28 deleterious(0) possibly_damaging(0.908) TCGA-F5-6814-01 7 157177649 157177649 A C DNAJB6 Missense_Mutation p.K189N 0.41 tolerated(0.09) unknown(0) TCGA-F5-6814-01 7 157178427 157178427 G A DNAJB6 Intron 0.26 TCGA-F5-6814-01 7 157903568 157903568 G A PTPRN2 Silent p.D532D 0.50 TCGA-F5-6814-01 7 158325499 158325499 C A PTPRN2 Intron 0.53 TCGA-F5-6814-01 7 158482516 158482516 C A NCAPG2 Nonsense_Mutation p.E223* 0.38 TCGA-F5-6814-01 7 158526804 158526804 A C ESYT2 3'UTR 0.20 TCGA-F5-6814-01 7 16131369 16131369 A C ISPD Nonsense_Mutation p.L436* 0.12 TCGA-F5-6814-01 7 16721017 16721017 A G BZW2 Silent p.R109R 0.38 TCGA-F5-6814-01 7 16736541 16736541 T C BZW2 Missense_Mutation p.V275A 0.20 deleterious(0) benign(0.022) TCGA-F5-6814-01 7 17378782 17378782 A G AHR Missense_Mutation p.T445A 0.12 tolerated(0.61) benign(0.005) TCGA-F5-6814-01 7 17836501 17836501 G A SNX13 Nonsense_Mutation p.R859* 0.60 TCGA-F5-6814-01 7 17838380 17838380 T G SNX13 Missense_Mutation p.K816Q 0.37 deleterious(0.01) probably_damaging(0.994) TCGA-F5-6814-01 7 1785513 1785513 C T ELFN1 Silent p.F427F 0.47 TCGA-F5-6814-01 7 18631156 18631156 G T HDAC9 Nonsense_Mutation p.E145* 0.38 TCGA-F5-6814-01 7 18706112 18706112 G T HDAC9 Intron 0.15 TCGA-F5-6814-01 7 18993834 18993834 G T HDAC9 Missense_Mutation p.Q1001H 0.08 deleterious(0) benign(0.176) TCGA-F5-6814-01 7 19737967 19737967 T G TWISTNB Missense_Mutation p.K330T 0.21 deleterious_low_confidence(0.03) benign(0.01) TCGA-F5-6814-01 7 19738018 19738018 C A TWISTNB Missense_Mutation p.R313I 0.38 deleterious(0) possibly_damaging(0.703) TCGA-F5-6814-01 7 19765311 19765311 C A TMEM196 Missense_Mutation p.K95N 0.12 tolerated(0.06) possibly_damaging(0.607) TCGA-F5-6814-01 7 19769005 19769005 G A TMEM196 Silent p.V68V 0.21 TCGA-F5-6814-01 7 20199662 20199662 C A MACC1 Nonsense_Mutation p.E108* 0.37 TCGA-F5-6814-01 7 20418769 20418769 A C ITGB8 Missense_Mutation p.N162H 0.30 tolerated(0.1) probably_damaging(0.998) TCGA-F5-6814-01 7 20431065 20431065 G T ITGB8 Missense_Mutation p.D334Y 0.10 deleterious(0) possibly_damaging(0.841) TCGA-F5-6814-01 7 20683120 20683120 G T ABCB5 Missense_Mutation p.K181N 0.47 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 20687646 20687646 G T ABCB5 Missense_Mutation p.G384V 0.24 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 20706557 20706557 A C ABCB5 Intron 0.37 TCGA-F5-6814-01 7 20744371 20744371 G T ABCB5 Nonsense_Mutation p.E788* 0.11 TCGA-F5-6814-01 7 20795127 20795127 G A ABCB5 Silent p.Q1218Q 0.28 TCGA-F5-6814-01 7 21721266 21721266 G T DNAH11 Missense_Mutation p.D1816Y 0.25 probably_damaging(1) TCGA-F5-6814-01 7 21730393 21730393 C A DNAH11 Missense_Mutation p.L1986I 0.33 probably_damaging(0.972) TCGA-F5-6814-01 7 21751462 21751462 G T DNAH11 Missense_Mutation p.D2330Y 0.08 probably_damaging(0.997) TCGA-F5-6814-01 7 21775406 21775406 A C DNAH11 Missense_Mutation p.D2537A 0.30 benign(0.012) TCGA-F5-6814-01 7 21784608 21784608 G T DNAH11 Nonsense_Mutation p.E2820* 0.38 TCGA-F5-6814-01 7 21827191 21827191 A C DNAH11 Missense_Mutation p.K3312T 0.18 benign(0.13) TCGA-F5-6814-01 7 21894014 21894014 C A DNAH11 Missense_Mutation p.L3722I 0.38 probably_damaging(0.933) TCGA-F5-6814-01 7 21934379 21934379 C T DNAH11 Missense_Mutation p.R4304W 0.52 possibly_damaging(0.571) TCGA-F5-6814-01 7 21939619 21939619 G A DNAH11 Missense_Mutation p.R4402Q 0.27 probably_damaging(0.968) TCGA-F5-6814-01 7 21941793 21941793 A C CDCA7L 3'UTR 0.26 TCGA-F5-6814-01 7 21941810 21941810 A G CDCA7L 3'UTR 0.30 TCGA-F5-6814-01 7 22533269 22533269 G T STEAP1B Missense_Mutation p.L91M 0.36 tolerated(0.06) benign(0.232) TCGA-F5-6814-01 7 22862303 22862303 A C TOMM7 Missense_Mutation p.I32M 0.30 deleterious(0.01) possibly_damaging(0.545) TCGA-F5-6814-01 7 2289561 2289561 C T NUDT1 Silent p.F97F 0.29 TCGA-F5-6814-01 7 23017908 23017908 G T FAM126A Missense_Mutation p.L105I 0.47 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 23213883 23213883 C A KLHL7 Missense_Mutation p.T576N 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.603) TCGA-F5-6814-01 7 23296837 23296837 A C GPNMB Intron 0.36 TCGA-F5-6814-01 7 23547109 23547109 G A TRA2A Missense_Mutation p.R191W 0.30 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 23682900 23682900 T G CCDC126 3'UTR 0.69 TCGA-F5-6814-01 7 23751890 23751890 A C STK31 Silent p.V45V 0.30 TCGA-F5-6814-01 7 23776576 23776576 A C STK31 Missense_Mutation p.K299T 0.48 deleterious(0.02) possibly_damaging(0.714) TCGA-F5-6814-01 7 23793941 23793941 G A STK31 Missense_Mutation p.D381N 0.20 tolerated(1) benign(0) TCGA-F5-6814-01 7 24681397 24681397 C A MPP6 Silent p.V60V 0.41 TCGA-F5-6814-01 7 24718897 24718897 C A MPP6 Missense_Mutation p.S421Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 24905064 24905064 C A OSBPL3 Missense_Mutation p.Q190H 0.44 deleterious(0.04) benign(0.058) TCGA-F5-6814-01 7 26894471 26894471 T G SKAP2 Missense_Mutation p.N36H 0.11 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 7 27168716 27168716 T C HOXA4 3'UTR 0.46 TCGA-F5-6814-01 7 27181437 27181437 T G HOXA5 3'UTR 0.30 TCGA-F5-6814-01 7 27182713 27182713 C T HOXA5 Missense_Mutation p.A172T 0.12 tolerated(0.33) benign(0.005) TCGA-F5-6814-01 7 27831737 27831737 G A TAX1BP1 Missense_Mutation p.R384Q 0.09 deleterious(0.03) possibly_damaging(0.746) TCGA-F5-6814-01 7 27868278 27868278 G T TAX1BP1 Nonsense_Mutation p.E734* 0.15 TCGA-F5-6814-01 7 28848921 28848921 C A CREB5 Missense_Mutation p.L382M 0.38 deleterious(0) unknown(0) TCGA-F5-6814-01 7 29546909 29546909 A C CHN2 Missense_Mutation p.K353Q 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 2972175 2972175 A C CARD11 Missense_Mutation p.F522V 0.42 tolerated(0.2) benign(0.016) TCGA-F5-6814-01 7 2976791 2976791 G T CARD11 Silent p.I407I 0.11 TCGA-F5-6814-01 7 2985538 2985538 G T CARD11 Missense_Mutation p.F91L 0.32 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 29918644 29918644 A C WIPF3 Missense_Mutation p.K81N 0.15 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-F5-6814-01 7 30008575 30008575 C A SCRN1 Nonsense_Mutation p.E57* 0.39 TCGA-F5-6814-01 7 30129843 30129843 T G PLEKHA8 3'UTR 0.16 TCGA-F5-6814-01 7 30130013 30130013 C A PLEKHA8 3'UTR 0.89 TCGA-F5-6814-01 7 30540161 30540161 G T GGCT Missense_Mutation p.S93Y 0.34 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 7 30704744 30704744 C T CRHR2 Missense_Mutation p.R189Q 0.29 deleterious(0.03) probably_damaging(0.964) TCGA-F5-6814-01 7 30890136 30890136 G A FAM188B Nonsense_Mutation p.W504* 0.36 TCGA-F5-6814-01 7 31378576 31378576 C T NEUROD6 Missense_Mutation p.E103K 0.34 deleterious(0) possibly_damaging(0.881) TCGA-F5-6814-01 7 31609413 31609413 G T CCDC129 Missense_Mutation p.D126Y 0.28 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 7 31793118 31793118 G A PDE1C Silent p.S730S 0.10 TCGA-F5-6814-01 7 31855640 31855640 C A PDE1C Nonsense_Mutation p.E631* 0.39 TCGA-F5-6814-01 7 31887668 31887668 C A PDE1C Missense_Mutation p.E358D 0.26 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 31918769 31918769 C A PDE1C Nonsense_Mutation p.E149* 0.16 TCGA-F5-6814-01 7 32527364 32527364 A G LSM5 Missense_Mutation p.I59T 0.07 tolerated(0.36) benign(0.005) TCGA-F5-6814-01 7 32615677 32615677 A C AVL9 Missense_Mutation p.N561H 0.45 tolerated(0.25) benign(0.006) TCGA-F5-6814-01 7 32910246 32910246 G T KBTBD2 Silent p.R195R 0.17 TCGA-F5-6814-01 7 32914648 32914648 C A KBTBD2 Missense_Mutation p.D98Y 0.45 deleterious(0.01) possibly_damaging(0.452) TCGA-F5-6814-01 7 33066500 33066500 G A NT5C3A Nonsense_Mutation p.R61* 0.53 TCGA-F5-6814-01 7 33312753 33312753 C T BBS9 Nonsense_Mutation p.R278* 0.19 TCGA-F5-6814-01 7 34724246 34724246 G T NPSR1 Missense_Mutation p.R77I 0.23 deleterious(0.01) possibly_damaging(0.852) TCGA-F5-6814-01 7 35057504 35057504 C T DPY19L1 Missense_Mutation p.R61H 0.33 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 7 35144338 35144338 G A DPY19L2P1 RNA 0.34 TCGA-F5-6814-01 7 35284666 35284666 G T TBX20 Silent p.L183L 0.42 TCGA-F5-6814-01 7 35944051 35944051 C A SEPT7 3'UTR 0.26 TCGA-F5-6814-01 7 36338714 36338714 G A EEPD1 Missense_Mutation p.E537K 0.30 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 7 36456711 36456711 G A ANLN Silent p.T515T 0.34 TCGA-F5-6814-01 7 36464330 36464330 G T ANLN Missense_Mutation p.K896N 0.33 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 7 36552867 36552867 G A AOAH Silent p.G573G 0.37 TCGA-F5-6814-01 7 36959026 36959026 G T ELMO1 Intron 0.33 TCGA-F5-6814-01 7 37780547 37780547 G T GPR141 Missense_Mutation p.M184I 0.36 tolerated(1) benign(0.001) TCGA-F5-6814-01 7 37890032 37890032 T G NME8 Nonsense_Mutation p.L29* 0.43 TCGA-F5-6814-01 7 37907312 37907312 C T NME8 Silent p.F210F 0.40 TCGA-F5-6814-01 7 37927990 37927990 T C NME8 Silent p.T453T 0.50 TCGA-F5-6814-01 7 37953878 37953878 G A SFRP4 Missense_Mutation p.R177W 0.21 deleterious(0) possibly_damaging(0.874) TCGA-F5-6814-01 7 38768321 38768321 C T VPS41 Missense_Mutation p.R777Q 0.23 tolerated(0.06) benign(0.246) TCGA-F5-6814-01 7 38768330 38768330 T G VPS41 Missense_Mutation p.K774T 0.26 deleterious(0.01) possibly_damaging(0.556) TCGA-F5-6814-01 7 40037225 40037225 G T CDK13 Missense_Mutation p.K668N 0.29 tolerated(0.08) probably_damaging(0.991) TCGA-F5-6814-01 7 40102651 40102651 A C CDK13 Missense_Mutation p.K911T 0.09 deleterious(0) possibly_damaging(0.828) TCGA-F5-6814-01 7 40228169 40228169 G A SUGCT Missense_Mutation p.R108Q 0.17 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 40229143 40229143 A T SUGCT Missense_Mutation p.S112C 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 4091396 4091396 C T SDK1 Silent p.L949L 0.32 TCGA-F5-6814-01 7 4169637 4169637 T C SDK1 Missense_Mutation p.F1346S 0.42 deleterious(0) possibly_damaging(0.729) TCGA-F5-6814-01 7 42005181 42005181 C T GLI3 Missense_Mutation p.E1164K 0.41 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 7 42018219 42018219 G A GLI3 Silent p.G542G 0.32 TCGA-F5-6814-01 7 42063100 42063100 C T GLI3 Silent p.A488A 0.19 TCGA-F5-6814-01 7 43503395 43503395 T G HECW1 Missense_Mutation p.L930V 0.11 tolerated(0.54) benign(0.004) TCGA-F5-6814-01 7 43506092 43506092 C A HECW1 Silent p.I946I 0.35 TCGA-F5-6814-01 7 43591911 43591911 C T HECW1 Missense_Mutation p.R1496W 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 43647901 43647901 G T STK17A Nonsense_Mutation p.E156* 0.45 TCGA-F5-6814-01 7 43982628 43982628 A C UBE2D4 Missense_Mutation p.K66Q 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-F5-6814-01 7 44104713 44104713 A C PGAM2 Splice_Site p.X138_splice 0.19 TCGA-F5-6814-01 7 44105051 44105051 G A PGAM2 Silent p.F26F 0.65 TCGA-F5-6814-01 7 44240803 44240803 C A YKT6 Nonsense_Mutation p.Y23* 0.42 TCGA-F5-6814-01 7 44797516 44797516 G A ZMIZ2 Missense_Mutation p.A208T 0.16 tolerated(0.4) benign(0) TCGA-F5-6814-01 7 44923955 44923955 C T PURB 3'UTR 0.38 TCGA-F5-6814-01 7 45121222 45121222 C T NACAD Missense_Mutation p.R1412H 0.27 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 7 45632384 45632384 C T ADCY1 Silent p.V222V 0.35 TCGA-F5-6814-01 7 45699746 45699746 C T ADCY1 Silent p.I471I 0.38 TCGA-F5-6814-01 7 45743022 45743022 G A ADCY1 Silent p.R834R 0.22 TCGA-F5-6814-01 7 45956157 45956157 T G IGFBP3 Missense_Mutation p.K253T 0.26 deleterious(0) probably_damaging(0.976) TCGA-F5-6814-01 7 47341837 47341837 A C TNS3 Missense_Mutation p.F1164C 0.22 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 47835681 47835681 A C PKD1L1 Missense_Mutation p.L2754R 0.12 deleterious(0) possibly_damaging(0.851) TCGA-F5-6814-01 7 47852865 47852865 G A PKD1L1 Silent p.I2400I 0.19 TCGA-F5-6814-01 7 47882726 47882726 G T PKD1L1 Missense_Mutation p.S1760Y 0.50 deleterious(0.03) benign(0.065) TCGA-F5-6814-01 7 47886600 47886600 G A PKD1L1 Missense_Mutation p.A1677V 0.23 tolerated(0.09) benign(0.134) TCGA-F5-6814-01 7 48027012 48027012 A C SUN3 Missense_Mutation p.L330R 0.26 deleterious(0) probably_damaging(0.993) TCGA-F5-6814-01 7 48065515 48065515 A C SUN3 Missense_Mutation p.I48S 0.21 deleterious_low_confidence(0.03) benign(0.291) TCGA-F5-6814-01 7 48075903 48075903 A C C7orf57 5'UTR 0.35 TCGA-F5-6814-01 7 48081078 48081078 C T C7orf57 Missense_Mutation p.S68L 0.38 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 48146968 48146968 T C UPP1 Silent p.R219R 0.21 TCGA-F5-6814-01 7 48284280 48284280 A C ABCA13 Missense_Mutation p.Q457P 0.50 probably_damaging(0.924) TCGA-F5-6814-01 7 48288926 48288926 G C ABCA13 Missense_Mutation p.E661D 0.14 benign(0.002) TCGA-F5-6814-01 7 48312083 48312083 A G ABCA13 Silent p.E940E 0.40 TCGA-F5-6814-01 7 48312997 48312998 - A ABCA13 Frame_Shift_Ins p.L1248Tfs*2 0.39 TCGA-F5-6814-01 7 48313656 48313656 G T ABCA13 Missense_Mutation p.D1465Y 0.20 possibly_damaging(0.73) TCGA-F5-6814-01 7 48315219 48315219 A G ABCA13 Missense_Mutation p.I1986V 0.35 benign(0.001) TCGA-F5-6814-01 7 48318632 48318632 T C ABCA13 Missense_Mutation p.I2614T 0.27 benign(0.004) TCGA-F5-6814-01 7 48391990 48391990 G A ABCA13 Missense_Mutation p.E3532K 0.27 probably_damaging(0.998) TCGA-F5-6814-01 7 4839854 4839854 A C RADIL Missense_Mutation p.V977G 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 48450124 48450124 G A ABCA13 Silent p.T4026T 0.38 TCGA-F5-6814-01 7 50070796 50070796 T G ZPBP Missense_Mutation p.K200Q 0.10 tolerated(0.1) probably_damaging(0.99) TCGA-F5-6814-01 7 50070828 50070828 G T ZPBP Missense_Mutation p.S189Y 0.11 tolerated(0.11) possibly_damaging(0.565) TCGA-F5-6814-01 7 50121432 50121432 C T ZPBP Missense_Mutation p.R91Q 0.11 tolerated(0.1) probably_damaging(0.968) TCGA-F5-6814-01 7 50135925 50135925 G T C7orf72 Missense_Mutation p.D82Y 0.36 tolerated(1) benign(0) TCGA-F5-6814-01 7 50136228 50136228 C T C7orf72 Missense_Mutation p.L183F 0.33 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 7 5023349 5023349 A C RBAK-RBAKDN 5'UTR 0.08 TCGA-F5-6814-01 7 50444433 50444433 C T IKZF1 Silent p.I121I 0.16 TCGA-F5-6814-01 7 50514152 50514152 A G FIGNL1 Silent p.C278C 0.25 TCGA-F5-6814-01 7 5103670 5103670 C A RBAK Missense_Mutation p.L195I 0.27 tolerated(0.34) benign(0.11) TCGA-F5-6814-01 7 51152997 51152997 G T COBL Missense_Mutation p.S321Y 0.45 deleterious(0) probably_damaging(0.962) TCGA-F5-6814-01 7 5270634 5270634 T G WIPI2 3'UTR 0.48 TCGA-F5-6814-01 7 54617757 54617757 C A VSTM2A Silent p.V176V 0.21 TCGA-F5-6814-01 7 54621761 54621761 C A VSTM2A Intron 0.42 TCGA-F5-6814-01 7 55241721 55241721 C T EGFR Silent p.F723F 0.37 TCGA-F5-6814-01 7 55492997 55492997 G T LANCL2 Silent p.V353V 0.19 TCGA-F5-6814-01 7 55540571 55540571 C T VOPP1 Missense_Mutation p.E166K 0.17 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-F5-6814-01 7 5567936 5567936 C T ACTB Missense_Mutation p.A260T 0.34 tolerated_low_confidence(0.16) benign(0.003) TCGA-F5-6814-01 7 55874904 55874904 G T SEPT14 Missense_Mutation p.L289I 0.33 tolerated(1) benign(0.225) TCGA-F5-6814-01 7 55910751 55910751 G A SEPT14 Missense_Mutation p.R148C 0.23 deleterious(0.01) probably_damaging(0.985) TCGA-F5-6814-01 7 56130876 56130876 G T CCT6A 3'UTR 0.35 TCGA-F5-6814-01 7 56170612 56170612 G T CHCHD2 Silent p.I131I 0.34 TCGA-F5-6814-01 7 57187836 57187836 C A ZNF479 Missense_Mutation p.R429I 0.31 tolerated(0.53) benign(0.003) TCGA-F5-6814-01 7 57188335 57188335 G T ZNF479 Missense_Mutation p.H263N 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-F5-6814-01 7 57188340 57188340 C A ZNF479 Missense_Mutation p.R261I 0.19 tolerated(0.34) benign(0.004) TCGA-F5-6814-01 7 57188759 57188759 C A ZNF479 Missense_Mutation p.E121D 0.36 tolerated(0.29) benign(0.004) TCGA-F5-6814-01 7 57194340 57194340 C G ZNF479 Missense_Mutation p.R42T 0.32 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 7 57529189 57529189 A C ZNF716 Missense_Mutation p.K341T 0.10 tolerated(0.5) benign(0.002) TCGA-F5-6814-01 7 57529518 57529518 C A ZNF716 Missense_Mutation p.L451I 0.34 deleterious(0.02) benign(0.013) TCGA-F5-6814-01 7 5756390 5756390 T G RNF216 Missense_Mutation p.D551A 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 590147 590147 C T PRKAR1B Missense_Mutation p.E356K 0.44 tolerated(0.16) probably_damaging(0.997) TCGA-F5-6814-01 7 5920444 5920444 G T OCM 5'UTR 0.22 TCGA-F5-6814-01 7 5977505 5977505 G T RSPH10B Missense_Mutation p.L632I 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 7 6035247 6035247 G A PMS2 Missense_Mutation p.S274L 0.31 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 7 6043613 6043613 G A PMS2 Silent p.F80F 0.12 TCGA-F5-6814-01 7 6077065 6077065 C T EIF2AK1 Missense_Mutation p.R441Q 0.31 deleterious(0) probably_damaging(0.969) TCGA-F5-6814-01 7 6182561 6182561 A G USP42 Splice_Site p.X266_splice 0.10 TCGA-F5-6814-01 7 6189775 6189775 G A USP42 Missense_Mutation p.E650K 0.46 deleterious(0.05) possibly_damaging(0.722) TCGA-F5-6814-01 7 62751958 62751958 T G ZNF733P RNA 0.21 TCGA-F5-6814-01 7 62752348 62752348 C A ZNF733P RNA 0.19 TCGA-F5-6814-01 7 62752431 62752431 C A ZNF733P RNA 0.10 TCGA-F5-6814-01 7 62752683 62752683 C A ZNF733P RNA 0.31 TCGA-F5-6814-01 7 63538086 63538086 G T ZNF727 Missense_Mutation p.R220I 0.46 tolerated(0.34) probably_damaging(0.935) TCGA-F5-6814-01 7 63538113 63538113 A C ZNF727 Missense_Mutation p.K229T 0.40 tolerated(0.07) probably_damaging(0.979) TCGA-F5-6814-01 7 63726874 63726874 G T ZNF679 Missense_Mutation p.R288I 0.27 tolerated(0.47) probably_damaging(0.955) TCGA-F5-6814-01 7 63982811 63982811 C A ZNF680 Silent p.V107V 0.27 TCGA-F5-6814-01 7 64167561 64167561 T G ZNF107 Missense_Mutation p.I293M 0.18 deleterious(0.02) probably_damaging(0.981) TCGA-F5-6814-01 7 64292672 64292672 T G ZNF138 3'Flank 0.27 TCGA-F5-6814-01 7 64437967 64437967 C A ZNF117 3'UTR 0.50 TCGA-F5-6814-01 7 64439810 64439810 A C ZNF117 Missense_Mutation p.L47V 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-F5-6814-01 7 6456244 6456244 A C DAGLB Intron 0.34 TCGA-F5-6814-01 7 65419082 65419082 C T VKORC1L1 Missense_Mutation p.A109V 0.26 tolerated(0.07) possibly_damaging(0.858) TCGA-F5-6814-01 7 6630031 6630031 C A C7orf26 Silent p.I39I 0.48 TCGA-F5-6814-01 7 66474639 66474639 G T TYW1 Nonsense_Mutation p.E115* 0.15 TCGA-F5-6814-01 7 6660958 6660958 G A ZNF853 Silent p.P112P 0.36 TCGA-F5-6814-01 7 6730699 6730699 C T ZNF12 Missense_Mutation p.R625Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 6731129 6731129 T C ZNF12 Missense_Mutation p.R482G 0.14 tolerated(0.26) possibly_damaging(0.863) TCGA-F5-6814-01 7 6797528 6797528 G A RSPH10B2 Missense_Mutation p.E74K 0.09 deleterious(0) probably_damaging(0.941) TCGA-F5-6814-01 7 6836384 6836384 G A RSPH10B2 Missense_Mutation p.E807K 0.64 deleterious(0.03) benign(0.018) TCGA-F5-6814-01 7 6838829 6838829 A G CCZ1B 3'UTR 0.11 TCGA-F5-6814-01 7 70255728 70255728 G A AUTS2 Missense_Mutation p.D1176N 0.32 deleterious(0) probably_damaging(0.974) TCGA-F5-6814-01 7 72081765 72081765 C T TYW1B Nonsense_Mutation p.W185* 0.20 TCGA-F5-6814-01 7 72412613 72412613 C G POM121 Missense_Mutation p.S429C 0.05 deleterious(0.05) probably_damaging(0.936) TCGA-F5-6814-01 7 72658862 72658862 T C GTF2IRD2P1 RNA 0.37 TCGA-F5-6814-01 7 72727252 72727252 T A TRIM50 Missense_Mutation p.N377Y 0.18 tolerated(1) benign(0.409) TCGA-F5-6814-01 7 72727253 72727253 C T TRIM50 Silent p.L376L 0.18 TCGA-F5-6814-01 7 73101345 73101345 A C WBSCR22 Silent p.R94R 0.31 TCGA-F5-6814-01 7 73477644 73477644 C T ELN Silent p.A621A 0.33 TCGA-F5-6814-01 7 73609538 73609538 G A EIF4H Missense_Mutation p.R216Q 0.18 deleterious(0) possibly_damaging(0.83) TCGA-F5-6814-01 7 73929920 73929920 C A GTF2IRD1 Missense_Mutation p.L171I 0.19 deleterious(0.02) probably_damaging(0.965) TCGA-F5-6814-01 7 74004202 74004202 C T GTF2IRD1 Silent p.L813L 0.28 TCGA-F5-6814-01 7 74004244 74004244 C A GTF2IRD1 Missense_Mutation p.F827L 0.27 deleterious(0) benign(0.001) TCGA-F5-6814-01 7 7413127 7413127 C T COL28A1 Missense_Mutation p.D804N 0.39 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 7 74191685 74191685 G A NCF1 Missense_Mutation p.E49K 0.29 tolerated(0.05) benign(0.428) TCGA-F5-6814-01 7 74234536 74234536 T C GTF2IRD2 Missense_Mutation p.T197A 0.22 tolerated_low_confidence(0.11) benign(0.004) TCGA-F5-6814-01 7 75044902 75044902 G A POM121C 3'Flank 0.16 TCGA-F5-6814-01 7 75044921 75044921 G A POM121C 3'Flank 0.35 TCGA-F5-6814-01 7 75070380 75070380 T G POM121C Missense_Mutation p.I27L 0.26 tolerated(0.13) benign(0.023) TCGA-F5-6814-01 7 75185399 75185399 A G HIP1 Silent p.H586H 0.12 TCGA-F5-6814-01 7 7634705 7634705 G A MIOS Missense_Mutation p.R713Q 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 7636027 7636027 G A MIOS Missense_Mutation p.R779Q 0.44 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 7 76885704 76885704 G T CCDC146 Nonsense_Mutation p.E188* 0.30 TCGA-F5-6814-01 7 76916188 76916188 G A CCDC146 Missense_Mutation p.R741H 0.27 deleterious(0.05) possibly_damaging(0.501) TCGA-F5-6814-01 7 77003431 77003431 T G GSAP Missense_Mutation p.K276T 0.15 tolerated(0.43) benign(0.019) TCGA-F5-6814-01 7 77033881 77033881 T G GSAP Missense_Mutation p.N80H 0.32 deleterious(0.02) probably_damaging(0.928) TCGA-F5-6814-01 7 77256452 77256452 A C PTPN12 Missense_Mutation p.N486H 0.12 tolerated(0.13) benign(0.139) TCGA-F5-6814-01 7 77378823 77378823 G A RSBN1L Silent p.E262E 0.19 TCGA-F5-6814-01 7 77379343 77379343 G T RSBN1L Missense_Mutation p.D436Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 77398013 77398013 A C RSBN1L Missense_Mutation p.K506N 0.18 tolerated(0.12) benign(0.033) TCGA-F5-6814-01 7 77530079 77530079 G T PHTF2 Missense_Mutation p.D56Y 0.31 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 77583141 77583141 A G PHTF2 Missense_Mutation p.N722S 0.12 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 7 77755110 77755110 T C MAGI2 Silent p.G1156G 0.21 TCGA-F5-6814-01 7 77830501 77830501 G T MAGI2 Missense_Mutation p.S686Y 0.33 deleterious(0) possibly_damaging(0.504) TCGA-F5-6814-01 7 77885618 77885618 A C MAGI2 Missense_Mutation p.D563E 0.27 tolerated(0.44) benign(0.004) TCGA-F5-6814-01 7 79840307 79840307 A G GNAI1 Missense_Mutation p.R205G 0.18 deleterious(0.02) possibly_damaging(0.597) TCGA-F5-6814-01 7 80303564 80303564 C A CD36 3'UTR 0.44 TCGA-F5-6814-01 7 80378291 80378291 A C SEMA3C Missense_Mutation p.F589V 0.12 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 7 81603828 81603828 C A CACNA2D1 Nonsense_Mutation p.E666* 0.21 TCGA-F5-6814-01 7 81799909 81799909 G A CACNA2D1 Missense_Mutation p.A104V 0.24 deleterious(0) probably_damaging(0.911) TCGA-F5-6814-01 7 82390709 82390709 A G PCLO Silent p.I5036I 0.40 TCGA-F5-6814-01 7 82453669 82453669 C T PCLO Missense_Mutation p.E4827K 0.35 unknown(0) TCGA-F5-6814-01 7 82545996 82545996 T C PCLO Missense_Mutation p.E3769G 0.18 unknown(0) TCGA-F5-6814-01 7 82585873 82585873 C A PCLO Nonsense_Mutation p.E1466* 0.39 TCGA-F5-6814-01 7 82763764 82763764 T G PCLO Missense_Mutation p.K1034N 0.35 unknown(0) TCGA-F5-6814-01 7 82785106 82785106 T G PCLO Missense_Mutation p.K284T 0.39 unknown(0) TCGA-F5-6814-01 7 83590997 83590997 T C SEMA3A Missense_Mutation p.D669G 0.34 tolerated(0.34) possibly_damaging(0.678) TCGA-F5-6814-01 7 83764160 83764160 T G SEMA3A Missense_Mutation p.K74Q 0.24 tolerated(0.07) possibly_damaging(0.593) TCGA-F5-6814-01 7 84628816 84628816 C A SEMA3D Missense_Mutation p.K758N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 7 84727134 84727134 T G SEMA3D Missense_Mutation p.K100T 0.36 tolerated(0.25) benign(0.008) TCGA-F5-6814-01 7 86394546 86394546 C A GRM3 Missense_Mutation p.L29I 0.46 tolerated(0.43) benign(0.001) TCGA-F5-6814-01 7 86416107 86416107 C T GRM3 Silent p.F333F 0.47 TCGA-F5-6814-01 7 86469105 86469105 C T GRM3 Missense_Mutation p.R759W 0.37 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 86522240 86522240 T G KIAA1324L Missense_Mutation p.Q954H 0.24 deleterious(0.01) probably_damaging(0.959) TCGA-F5-6814-01 7 86813839 86813839 G A DMTF1 Missense_Mutation p.R316H 0.36 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 7 87051527 87051527 G A ABCB4 Silent p.G742G 0.34 TCGA-F5-6814-01 7 87053314 87053314 C A ABCB4 Nonsense_Mutation p.E707* 0.33 TCGA-F5-6814-01 7 87076372 87076372 T G ABCB4 Missense_Mutation p.Y328S 0.13 deleterious(0) possibly_damaging(0.795) TCGA-F5-6814-01 7 87079358 87079358 G A ABCB4 Silent p.G253G 0.27 TCGA-F5-6814-01 7 87079402 87079402 A G ABCB4 Missense_Mutation p.S239P 0.41 deleterious(0.02) probably_damaging(0.936) TCGA-F5-6814-01 7 87082320 87082320 C T ABCB4 Missense_Mutation p.R159Q 0.20 tolerated(0.1) benign(0.023) TCGA-F5-6814-01 7 87133499 87133499 G T ABCB1 3'UTR 0.33 TCGA-F5-6814-01 7 87174227 87174227 C A ABCB1 Missense_Mutation p.R659I 0.38 tolerated(0.22) benign(0) TCGA-F5-6814-01 7 87179792 87179792 C A ABCB1 Nonsense_Mutation p.E406* 0.44 TCGA-F5-6814-01 7 87183219 87183219 C A ABCB1 Missense_Mutation p.R286I 0.27 tolerated(0.12) benign(0.007) TCGA-F5-6814-01 7 87190589 87190589 C A ABCB1 Nonsense_Mutation p.E273* 0.35 TCGA-F5-6814-01 7 87479232 87479232 C T SLC25A40 Missense_Mutation p.G99D 0.39 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 87785260 87785260 G T ADAM22 Nonsense_Mutation p.E616* 0.28 TCGA-F5-6814-01 7 87912202 87912202 G T STEAP4 Silent p.I246I 0.34 TCGA-F5-6814-01 7 87912211 87912211 T G STEAP4 Silent p.P243P 0.34 TCGA-F5-6814-01 7 87913314 87913314 C A STEAP4 Nonsense_Mutation p.E91* 0.09 TCGA-F5-6814-01 7 87913454 87913454 G T STEAP4 Missense_Mutation p.S44Y 0.09 deleterious(0.02) benign(0.166) TCGA-F5-6814-01 7 88424307 88424307 A C C7orf62 5'UTR 0.24 TCGA-F5-6814-01 7 88965134 88965134 C A ZNF804B Silent p.I946I 0.26 TCGA-F5-6814-01 7 88966193 88966193 C A ZNF804B Missense_Mutation p.H1299Q 0.33 tolerated(0.1) probably_damaging(0.921) TCGA-F5-6814-01 7 89794090 89794090 T G STEAP1 3'UTR 0.17 TCGA-F5-6814-01 7 89897683 89897683 A G C7orf63 Missense_Mutation p.K173E 0.34 tolerated(0.25) possibly_damaging(0.824) TCGA-F5-6814-01 7 89936245 89936245 G T C7orf63 Nonsense_Mutation p.E766* 0.30 TCGA-F5-6814-01 7 89939572 89939572 G T C7orf63 3'UTR 0.20 TCGA-F5-6814-01 7 90001510 90001510 C A GTPBP10 Missense_Mutation p.S169Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 90897834 90897834 T G FZD1 3'UTR 0.10 TCGA-F5-6814-01 7 91630473 91630473 C T AKAP9 Silent p.F414F 0.30 TCGA-F5-6814-01 7 91641793 91641793 T G AKAP9 Silent p.V1123V 0.09 TCGA-F5-6814-01 7 91645545 91645545 G T AKAP9 Missense_Mutation p.D1239Y 0.31 benign(0.319) TCGA-F5-6814-01 7 91691637 91691637 T G AKAP9 Missense_Mutation p.I1938M 0.37 probably_damaging(0.999) TCGA-F5-6814-01 7 91739490 91739490 T G AKAP9 3'UTR 0.44 TCGA-F5-6814-01 7 91792776 91792776 A C LRRD1 Missense_Mutation p.L581V 0.41 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 7 91793556 91793556 C A LRRD1 Nonsense_Mutation p.E321* 0.19 TCGA-F5-6814-01 7 91842641 91842641 T C KRIT1 Silent p.E631E 0.14 TCGA-F5-6814-01 7 91852192 91852192 C T KRIT1 Missense_Mutation p.R452H 0.09 deleterious(0.04) probably_damaging(0.974) TCGA-F5-6814-01 7 91864211 91864211 G T KRIT1 Nonsense_Mutation p.Y252* 0.30 TCGA-F5-6814-01 7 92080063 92080063 A C GATAD1 Missense_Mutation p.I142L 0.14 tolerated(0.12) benign(0.004) TCGA-F5-6814-01 7 92118673 92118673 A C PEX1 Nonsense_Mutation p.L1234* 0.09 TCGA-F5-6814-01 7 92123683 92123683 C T PEX1 Missense_Mutation p.R985H 0.25 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 92166222 92166222 C A RBM48 Missense_Mutation p.H359N 0.36 tolerated(0.4) benign(0.159) TCGA-F5-6814-01 7 92166247 92166247 T G RBM48 Missense_Mutation p.I367R 0.12 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 7 92205115 92205115 C A FAM133B Missense_Mutation p.K162N 0.39 deleterious_low_confidence(0) unknown(0) TCGA-F5-6814-01 7 92207475 92207475 T G FAM133B Missense_Mutation p.K100Q 0.46 deleterious_low_confidence(0.02) unknown(0) TCGA-F5-6814-01 7 92731456 92731456 G T SAMD9 Missense_Mutation p.L1319I 0.42 tolerated(0.42) benign(0.013) TCGA-F5-6814-01 7 92731780 92731780 G T SAMD9 Missense_Mutation p.L1211I 0.13 tolerated(0.18) probably_damaging(0.968) TCGA-F5-6814-01 7 92731803 92731803 A G SAMD9 Missense_Mutation p.V1203A 0.12 deleterious(0.02) benign(0.027) TCGA-F5-6814-01 7 92734536 92734536 A T SAMD9 Missense_Mutation p.V292D 0.38 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 7 92734558 92734558 G A SAMD9 Nonsense_Mutation p.R285* 0.45 TCGA-F5-6814-01 7 92762802 92762802 C T SAMD9L Missense_Mutation p.R828Q 0.15 tolerated(0.26) benign(0.052) TCGA-F5-6814-01 7 92763230 92763230 T C SAMD9L Silent p.E685E 0.35 TCGA-F5-6814-01 7 92763796 92763796 A G SAMD9L Missense_Mutation p.F497L 0.37 deleterious(0.03) probably_damaging(0.996) TCGA-F5-6814-01 7 92764432 92764432 G A SAMD9L Missense_Mutation p.R285W 0.27 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 92764819 92764819 G C SAMD9L Missense_Mutation p.L156V 0.26 tolerated(0.44) benign(0.013) TCGA-F5-6814-01 7 92887673 92887673 G T CCDC132 Missense_Mutation p.R182I 0.23 deleterious(0.01) benign(0.305) TCGA-F5-6814-01 7 92987818 92987818 T G CCDC132 3'UTR 0.29 TCGA-F5-6814-01 7 93108804 93108804 G T CALCR Missense_Mutation p.L41I 0.15 tolerated(0.06) benign(0.276) TCGA-F5-6814-01 7 93116311 93116311 C A CALCR Missense_Mutation p.D13Y 0.42 tolerated_low_confidence(0.08) benign(0.056) TCGA-F5-6814-01 7 93551374 93551374 C T GNG11 5'UTR 0.27 TCGA-F5-6814-01 7 93551468 93551468 G A GNG11 Missense_Mutation p.E7K 0.39 deleterious(0.04) possibly_damaging(0.61) TCGA-F5-6814-01 7 93555429 93555429 G T GNG11 Missense_Mutation p.K41N 0.31 deleterious(0.05) possibly_damaging(0.77) TCGA-F5-6814-01 7 93555577 93555577 G C GNG11 3'UTR 0.38 TCGA-F5-6814-01 7 94184934 94184934 C A CASD1 Missense_Mutation p.S753Y 0.41 tolerated(0.11) possibly_damaging(0.878) TCGA-F5-6814-01 7 94228092 94228092 C T SGCE Silent p.T416T 0.40 TCGA-F5-6814-01 7 94230093 94230093 T C SGCE Missense_Mutation p.Y301C 0.45 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 7 94248135 94248135 T G SGCE Silent p.I199I 0.23 TCGA-F5-6814-01 7 94252691 94252691 G A SGCE Missense_Mutation p.R137C 0.35 tolerated(0.18) benign(0.093) TCGA-F5-6814-01 7 94295703 94295703 G T PEG10 3'UTR 0.12 TCGA-F5-6814-01 7 94295986 94295986 G T PEG10 3'UTR 0.36 TCGA-F5-6814-01 7 94296134 94296134 G A PEG10 3'UTR 0.41 TCGA-F5-6814-01 7 94296980 94296980 G T PEG10 3'UTR 0.22 TCGA-F5-6814-01 7 94297068 94297068 A C PEG10 3'UTR 0.10 TCGA-F5-6814-01 7 94297528 94297528 T G PEG10 3'UTR 0.09 TCGA-F5-6814-01 7 94297605 94297605 T G PEG10 3'UTR 0.22 TCGA-F5-6814-01 7 94297800 94297800 A C PEG10 3'UTR 0.35 TCGA-F5-6814-01 7 94539496 94539496 G A PPP1R9A Missense_Mutation p.R24Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 94539793 94539793 G A PPP1R9A Missense_Mutation p.R123Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 94539898 94539898 G A PPP1R9A Missense_Mutation p.R158H 0.30 tolerated(0.05) benign(0.233) TCGA-F5-6814-01 7 94540512 94540512 G T PPP1R9A Nonsense_Mutation p.E363* 0.38 TCGA-F5-6814-01 7 94879431 94879431 T G PPP1R9A Missense_Mutation p.L754V 0.30 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 94928249 94928249 C T PON1 3'UTR 0.51 TCGA-F5-6814-01 7 94928253 94928253 C A PON1 3'UTR 0.54 TCGA-F5-6814-01 7 94953734 94953734 C A PON1 Missense_Mutation p.R18S 0.33 tolerated(0.83) benign(0.002) TCGA-F5-6814-01 7 95001492 95001492 G A PON3 Silent p.I120I 0.25 TCGA-F5-6814-01 7 95041011 95041011 T G PON2 Missense_Mutation p.N150H 0.33 tolerated(0.16) benign(0.105) TCGA-F5-6814-01 7 95041048 95041048 C A PON2 Missense_Mutation p.K137N 0.10 tolerated(0.05) benign(0.071) TCGA-F5-6814-01 7 95041698 95041698 C T PON2 Missense_Mutation p.R98Q 0.35 tolerated(0.82) benign(0.012) TCGA-F5-6814-01 7 95157128 95157128 C T ASB4 Missense_Mutation p.A164V 0.43 deleterious(0) possibly_damaging(0.657) TCGA-F5-6814-01 7 95214844 95214844 C T PDK4 3'UTR 0.30 TCGA-F5-6814-01 7 95457420 95457420 A G DYNC1I1 Silent p.S139S 0.16 TCGA-F5-6814-01 7 97498282 97498282 G A ASNS Nonsense_Mutation p.R63* 0.34 TCGA-F5-6814-01 7 97770739 97770739 G T LMTK2 Missense_Mutation p.D88Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 7 97823477 97823477 G A LMTK2 Missense_Mutation p.E1234K 0.54 deleterious(0.05) probably_damaging(0.984) TCGA-F5-6814-01 7 97823539 97823539 G A LMTK2 Silent p.P1254P 0.25 TCGA-F5-6814-01 7 97873947 97873947 G T TECPR1 Missense_Mutation p.S156Y 0.47 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 7 97937156 97937156 C T BAIAP2L1 Silent p.L336L 0.35 TCGA-F5-6814-01 7 97939817 97939817 C T BAIAP2L1 Missense_Mutation p.D299N 0.32 tolerated(0.46) possibly_damaging(0.79) TCGA-F5-6814-01 7 97941483 97941483 C A BAIAP2L1 Nonsense_Mutation p.E245* 0.42 TCGA-F5-6814-01 7 98457860 98457860 C T TMEM130 Missense_Mutation p.D165N 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 7 98565140 98565140 C T TRRAP Missense_Mutation p.A2437V 0.15 benign(0.07) TCGA-F5-6814-01 7 98569486 98569486 T G TRRAP Missense_Mutation p.L2579R 0.29 benign(0.009) TCGA-F5-6814-01 7 98601886 98601886 C A TRRAP Silent p.I3447I 0.10 TCGA-F5-6814-01 7 98608872 98608872 C T TRRAP Silent p.I3698I 0.40 TCGA-F5-6814-01 7 98647234 98647234 T G SMURF1 Missense_Mutation p.N328T 0.08 deleterious(0.03) possibly_damaging(0.457) TCGA-F5-6814-01 7 98771332 98771332 T C KPNA7 Nonstop_Mutation p.*517Wext*13 0.29 TCGA-F5-6814-01 7 98935878 98935878 G T ARPC1A Nonsense_Mutation p.E47* 0.21 TCGA-F5-6814-01 7 99013882 99013882 A G BUD31 Silent p.R72R 0.10 TCGA-F5-6814-01 7 99055918 99055918 C T ATP5J2 3'UTR 0.20 TCGA-F5-6814-01 7 99079784 99079784 A C ZNF789 Intron 0.31 TCGA-F5-6814-01 7 99084411 99084411 G A ZNF789 Missense_Mutation p.R193Q 0.17 tolerated(0.39) benign(0.046) TCGA-F5-6814-01 7 99084969 99084969 G T ZNF789 Missense_Mutation p.S379I 0.42 deleterious(0) possibly_damaging(0.797) TCGA-F5-6814-01 7 99091180 99091180 G A ZNF394 Missense_Mutation p.S553L 0.16 tolerated_low_confidence(0.14) benign(0) TCGA-F5-6814-01 7 99161602 99161602 A C ZNF655 Intron 0.35 TCGA-F5-6814-01 7 99359779 99359779 C A CYP3A4 Missense_Mutation p.D380Y 0.16 deleterious(0) probably_damaging(0.963) TCGA-F5-6814-01 7 99453261 99453261 T G CYP3A43 Missense_Mutation p.L240V 0.13 tolerated(0.47) benign(0.044) TCGA-F5-6814-01 7 99457596 99457596 G A CYP3A43 Missense_Mutation p.A337T 0.14 tolerated(0.44) benign(0.011) TCGA-F5-6814-01 7 99473800 99473800 G T OR2AE1 Missense_Mutation p.S286Y 0.43 deleterious(0) benign(0.003) TCGA-F5-6814-01 7 99668918 99668918 C A ZNF3 Nonsense_Mutation p.E397* 0.38 TCGA-F5-6814-01 7 99687273 99687273 A C COPS6 Missense_Mutation p.N80H 0.44 tolerated(0.13) benign(0.16) TCGA-F5-6814-01 7 99701754 99701754 T G AP4M1 Missense_Mutation p.L195V 0.11 deleterious(0.01) possibly_damaging(0.866) TCGA-F5-6814-01 7 99779718 99779718 G A STAG3 Missense_Mutation p.G41D 0.33 tolerated_low_confidence(0.23) benign(0.001) TCGA-F5-6814-01 7 99802729 99802729 G A STAG3 Missense_Mutation p.R1018Q 0.44 deleterious(0) probably_damaging(0.978) TCGA-F5-6814-01 7 99998894 99998894 C A ZCWPW1 Nonsense_Mutation p.E564* 0.42 TCGA-F5-6814-01 7 99999598 99999598 C T ZCWPW1 Missense_Mutation p.R513K 0.42 tolerated(0.3) benign(0.036) TCGA-F5-6814-01 8 100205112 100205112 G T VPS13B Missense_Mutation p.R781I 0.14 deleterious(0.04) probably_damaging(0.944) TCGA-F5-6814-01 8 101054038 101054038 C T RGS22 Missense_Mutation p.E644K 0.10 tolerated(0.23) benign(0.025) TCGA-F5-6814-01 8 101054051 101054051 G A RGS22 Silent p.Y639Y 0.25 TCGA-F5-6814-01 8 101075737 101075737 T G RGS22 Missense_Mutation p.K420T 0.10 tolerated(0.24) possibly_damaging(0.548) TCGA-F5-6814-01 8 101076056 101076056 C A RGS22 Nonsense_Mutation p.E314* 0.09 TCGA-F5-6814-01 8 101092378 101092378 A C RGS22 Missense_Mutation p.V108G 0.09 deleterious(0.01) possibly_damaging(0.766) TCGA-F5-6814-01 8 101226109 101226109 G A SPAG1 Missense_Mutation p.E500K 0.21 deleterious(0.01) possibly_damaging(0.843) TCGA-F5-6814-01 8 101287376 101287376 C A RNF19A Missense_Mutation p.A230S 0.11 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 101727768 101727768 C A PABPC1 Nonsense_Mutation p.E189* 0.31 TCGA-F5-6814-01 8 101730007 101730007 C T PABPC1 Missense_Mutation p.R166H 0.29 deleterious(0.01) benign(0.002) TCGA-F5-6814-01 8 102555525 102555525 G A GRHL2 Missense_Mutation p.R26Q 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-F5-6814-01 8 102731623 102731623 T C NCALD Missense_Mutation p.T79A 0.37 tolerated(0.29) benign(0.161) TCGA-F5-6814-01 8 103220438 103220438 G A RRM2B Nonsense_Mutation p.R327* 0.41 TCGA-F5-6814-01 8 103293569 103293569 T C UBR5 Missense_Mutation p.K1959E 0.09 deleterious(0) probably_damaging(0.952) TCGA-F5-6814-01 8 103357690 103357690 C A UBR5 Missense_Mutation p.D274Y 0.33 deleterious(0) possibly_damaging(0.521) TCGA-F5-6814-01 8 103564262 103564262 C T ODF1 Nonsense_Mutation p.R103* 0.30 TCGA-F5-6814-01 8 104075275 104075275 A C ATP6V1C1 Missense_Mutation p.K245T 0.31 deleterious(0) probably_damaging(0.947) TCGA-F5-6814-01 8 104240320 104240320 T C BAALC Missense_Mutation p.V144A 0.26 tolerated(0.13) benign(0.02) TCGA-F5-6814-01 8 104419974 104419974 T G SLC25A32 Missense_Mutation p.I65L 0.14 tolerated(0.86) benign(0.006) TCGA-F5-6814-01 8 10469215 10469215 T C RP1L1 Missense_Mutation p.D798G 0.12 benign(0.055) TCGA-F5-6814-01 8 104897620 104897620 G A RIMS2 Missense_Mutation p.A265T 0.16 tolerated_low_confidence(0.32) benign(0.005) TCGA-F5-6814-01 8 104948921 104948921 C T RIMS2 Nonsense_Mutation p.R840* 0.40 TCGA-F5-6814-01 8 105263386 105263386 T G RIMS2 Missense_Mutation p.L1276V 0.27 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-F5-6814-01 8 10532320 10532320 C A C8orf74 Missense_Mutation p.F71L 0.46 tolerated(0.17) possibly_damaging(0.58) TCGA-F5-6814-01 8 105360964 105360964 G A DCSTAMP Missense_Mutation p.A62T 0.11 tolerated(0.57) benign(0.001) TCGA-F5-6814-01 8 105361304 105361304 T G DCSTAMP Missense_Mutation p.L175R 0.31 tolerated(0.11) possibly_damaging(0.781) TCGA-F5-6814-01 8 105361722 105361722 T G DCSTAMP Missense_Mutation p.D314E 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 105463515 105463515 C T DPYS Missense_Mutation p.D128N 0.41 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 8 105509882 105509882 G A LRP12 Missense_Mutation p.R300C 0.27 deleterious(0.01) possibly_damaging(0.668) TCGA-F5-6814-01 8 105511550 105511550 A C LRP12 Missense_Mutation p.F157C 0.23 deleterious(0) possibly_damaging(0.525) TCGA-F5-6814-01 8 105521183 105521183 C T LRP12 Missense_Mutation p.E86K 0.39 deleterious(0.01) benign(0.052) TCGA-F5-6814-01 8 10583430 10583430 G A SOX7 Missense_Mutation p.R381C 0.21 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 10623385 10623385 C T PINX1 Silent p.T171T 0.18 TCGA-F5-6814-01 8 106813490 106813490 G T ZFPM2 Nonsense_Mutation p.E394* 0.44 TCGA-F5-6814-01 8 106813826 106813826 G T ZFPM2 Missense_Mutation p.D506Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 106814193 106814193 C A ZFPM2 Missense_Mutation p.S628Y 0.23 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 8 106814801 106814801 G T ZFPM2 Missense_Mutation p.D831Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 107371765 107371765 T G OXR1 5'UTR 0.15 TCGA-F5-6814-01 8 10756224 10756224 G A XKR6 Silent p.I388I 0.36 TCGA-F5-6814-01 8 108334272 108334272 T C ANGPT1 Silent p.Q220Q 0.23 TCGA-F5-6814-01 8 109001376 109001376 C T RSPO2 Missense_Mutation p.R64Q 0.30 tolerated(0.07) probably_damaging(0.935) TCGA-F5-6814-01 8 109229609 109229609 C T EIF3E Missense_Mutation p.R268Q 0.35 tolerated(0.07) benign(0.002) TCGA-F5-6814-01 8 109498742 109498742 T G EMC2 Missense_Mutation p.F270C 0.37 tolerated(0.19) benign(0) TCGA-F5-6814-01 8 109796543 109796543 C T TMEM74 Missense_Mutation p.R262Q 0.43 deleterious(0.04) benign(0.066) TCGA-F5-6814-01 8 109796947 109796947 C T TMEM74 Silent p.S127S 0.24 TCGA-F5-6814-01 8 109797212 109797212 G A TMEM74 Missense_Mutation p.A39V 0.31 tolerated(0.08) benign(0.085) TCGA-F5-6814-01 8 110099923 110099923 A G TRHR Missense_Mutation p.N61S 0.38 deleterious(0.03) probably_damaging(0.967) TCGA-F5-6814-01 8 110131696 110131696 G T TRHR 3'UTR 0.33 TCGA-F5-6814-01 8 110305656 110305656 C T NUDCD1 Missense_Mutation p.R186Q 0.41 deleterious(0.05) benign(0.002) TCGA-F5-6814-01 8 110412532 110412532 T C PKHD1L1 Missense_Mutation p.Y414H 0.38 tolerated(0.47) probably_damaging(0.972) TCGA-F5-6814-01 8 110448585 110448585 T G PKHD1L1 Nonsense_Mutation p.L1175* 0.13 TCGA-F5-6814-01 8 110456054 110456054 A G PKHD1L1 Missense_Mutation p.T1572A 0.39 deleterious(0.02) benign(0.033) TCGA-F5-6814-01 8 110457308 110457308 G A PKHD1L1 Missense_Mutation p.G1737E 0.08 deleterious(0.02) possibly_damaging(0.768) TCGA-F5-6814-01 8 110474035 110474035 G T PKHD1L1 Missense_Mutation p.K2427N 0.42 deleterious(0) benign(0.244) TCGA-F5-6814-01 8 110478892 110478892 C A PKHD1L1 Missense_Mutation p.F2833L 0.50 deleterious(0.03) benign(0.297) TCGA-F5-6814-01 8 110495278 110495278 G A PKHD1L1 Missense_Mutation p.E3174K 0.32 tolerated(0.27) benign(0.212) TCGA-F5-6814-01 8 110502190 110502190 G T PKHD1L1 Missense_Mutation p.R3297I 0.24 deleterious(0) probably_damaging(0.965) TCGA-F5-6814-01 8 110530551 110530551 G T PKHD1L1 Nonsense_Mutation p.E3949* 0.54 TCGA-F5-6814-01 8 110542360 110542360 A C PKHD1L1 3'UTR 0.16 TCGA-F5-6814-01 8 110567014 110567014 C T EBAG9 Silent p.I73I 0.23 TCGA-F5-6814-01 8 11188774 11188774 C T SLC35G5 Silent p.F53F 0.41 TCGA-F5-6814-01 8 113236966 113236966 T G CSMD3 3'UTR 0.22 TCGA-F5-6814-01 8 113267626 113267626 G A CSMD3 Missense_Mutation p.A3298V 0.38 deleterious(0.05) benign(0.026) TCGA-F5-6814-01 8 113303888 113303888 G T CSMD3 Missense_Mutation p.S2942Y 0.15 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 8 113348973 113348973 A G CSMD3 Silent p.C2309C 0.36 TCGA-F5-6814-01 8 113420601 113420601 G A CSMD3 Nonsense_Mutation p.R1851* 0.34 TCGA-F5-6814-01 8 113420640 113420640 C A CSMD3 Nonsense_Mutation p.E1838* 0.17 TCGA-F5-6814-01 8 113529335 113529335 C A CSMD3 Nonsense_Mutation p.G1562* 0.28 TCGA-F5-6814-01 8 113564906 113564906 G T CSMD3 Silent p.I1426I 0.27 TCGA-F5-6814-01 8 113599318 113599318 A C CSMD3 Missense_Mutation p.L1288V 0.31 deleterious(0.03) probably_damaging(0.991) TCGA-F5-6814-01 8 113599442 113599442 C T CSMD3 Silent p.T1246T 0.18 TCGA-F5-6814-01 8 114031329 114031329 G T CSMD3 Missense_Mutation p.H333N 0.38 deleterious(0.04) possibly_damaging(0.74) TCGA-F5-6814-01 8 114290896 114290896 T A CSMD3 Missense_Mutation p.T147S 0.40 tolerated(0.33) benign(0.14) TCGA-F5-6814-01 8 114448976 114448976 C A CSMD3 Missense_Mutation p.K36N 0.42 deleterious_low_confidence(0.02) benign(0.003) TCGA-F5-6814-01 8 116599625 116599625 T G TRPS1 Missense_Mutation p.K768T 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 8 116632175 116632175 A T TRPS1 Missense_Mutation p.F50L 0.38 tolerated_low_confidence(0.66) benign(0.003) TCGA-F5-6814-01 8 116632180 116632180 C A TRPS1 Nonsense_Mutation p.E49* 0.37 TCGA-F5-6814-01 8 116635898 116635898 C A TRPS1 5'UTR 0.20 TCGA-F5-6814-01 8 11689096 11689096 C T FDFT1 Missense_Mutation p.R317W 0.10 deleterious(0.02) possibly_damaging(0.803) TCGA-F5-6814-01 8 117661063 117661063 T C EIF3H Silent p.Q270Q 0.11 TCGA-F5-6814-01 8 117669471 117669471 C A EIF3H Missense_Mutation p.K180N 0.08 tolerated(0.69) benign(0.017) TCGA-F5-6814-01 8 117861245 117861245 A C RAD21 Missense_Mutation p.D548E 0.38 tolerated(0.65) benign(0.005) TCGA-F5-6814-01 8 117875405 117875405 C A RAD21 Nonsense_Mutation p.E80* 0.41 TCGA-F5-6814-01 8 118170063 118170063 C T SLC30A8 Silent p.C184C 0.18 TCGA-F5-6814-01 8 118184835 118184835 T G SLC30A8 Missense_Mutation p.F342C 0.11 deleterious(0.01) possibly_damaging(0.859) TCGA-F5-6814-01 8 11831592 11831592 G A DEFB136 Missense_Mutation p.R31C 0.53 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 8 11994798 11994798 G A USP17L2 Missense_Mutation p.S491L 0.17 deleterious(0.02) benign(0.069) TCGA-F5-6814-01 8 11995777 11995777 G T USP17L2 Missense_Mutation p.L165I 0.31 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 8 120079549 120079549 G T COLEC10 Missense_Mutation p.R10I 0.42 deleterious(0.04) benign(0.039) TCGA-F5-6814-01 8 120116099 120116099 C T COLEC10 Missense_Mutation p.A136V 0.29 deleterious(0.05) possibly_damaging(0.656) TCGA-F5-6814-01 8 120575243 120575243 C T ENPP2 Missense_Mutation p.G811S 0.44 tolerated(0.07) probably_damaging(0.91) TCGA-F5-6814-01 8 120608139 120608139 C A ENPP2 Missense_Mutation p.R359I 0.17 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-F5-6814-01 8 120608238 120608238 C T ENPP2 Missense_Mutation p.S326N 0.32 deleterious(0.02) benign(0.098) TCGA-F5-6814-01 8 120633706 120633706 T G ENPP2 Missense_Mutation p.N116H 0.51 tolerated(0.67) benign(0.002) TCGA-F5-6814-01 8 120744062 120744062 C T TAF2 3'UTR 0.37 TCGA-F5-6814-01 8 120759048 120759048 T G TAF2 Missense_Mutation p.K1002T 0.34 tolerated(0.06) benign(0.189) TCGA-F5-6814-01 8 120768253 120768253 C A TAF2 Missense_Mutation p.M957I 0.23 tolerated(0.5) benign(0.001) TCGA-F5-6814-01 8 120772963 120772963 T C TAF2 Missense_Mutation p.I858M 0.11 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 8 120797489 120797490 - T TAF2 Frame_Shift_Ins p.I604Nfs*10 0.12 TCGA-F5-6814-01 8 120940687 120940687 T C DEPTOR Missense_Mutation p.L57P 0.21 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 8 121160114 121160114 G A COL14A1 Nonsense_Mutation p.W11* 0.29 TCGA-F5-6814-01 8 121228689 121228689 G A COL14A1 Missense_Mutation p.R566Q 0.32 deleterious(0.02) probably_damaging(0.935) TCGA-F5-6814-01 8 121354670 121354670 G A COL14A1 Missense_Mutation p.E1625K 0.09 deleterious(0) possibly_damaging(0.466) TCGA-F5-6814-01 8 121528182 121528182 G A MTBP Missense_Mutation p.R666Q 0.09 tolerated(0.25) benign(0.007) TCGA-F5-6814-01 8 121644855 121644855 C T SNTB1 Silent p.T275T 0.40 TCGA-F5-6814-01 8 122626583 122626583 G T HAS2 Missense_Mutation p.F475L 0.15 tolerated(0.16) benign(0.007) TCGA-F5-6814-01 8 124034962 124034962 C A DERL1 Missense_Mutation p.D139Y 0.16 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 8 124138749 124138749 T G TBC1D31 Missense_Mutation p.L569R 0.46 deleterious(0) possibly_damaging(0.651) TCGA-F5-6814-01 8 124206323 124206323 C T FAM83A Silent p.F236F 0.10 TCGA-F5-6814-01 8 124221862 124221862 C T FAM83A 3'UTR 0.25 TCGA-F5-6814-01 8 124266418 124266418 C T ZHX1 Missense_Mutation p.S590N 0.08 tolerated(0.31) benign(0.012) TCGA-F5-6814-01 8 124268350 124268350 T G ZHX1 5'UTR 0.09 TCGA-F5-6814-01 8 124349902 124349902 C T ATAD2 Missense_Mutation p.R1005Q 0.16 deleterious(0) possibly_damaging(0.776) TCGA-F5-6814-01 8 124382125 124382125 C A ATAD2 Missense_Mutation p.E289D 0.32 tolerated(1) benign(0.001) TCGA-F5-6814-01 8 124448780 124448780 T G WDYHV1 Missense_Mutation p.F108V 0.08 deleterious(0.04) possibly_damaging(0.489) TCGA-F5-6814-01 8 124515620 124515620 T G FBXO32 Missense_Mutation p.K354T 0.44 deleterious(0.01) benign(0.19) TCGA-F5-6814-01 8 124705986 124705986 C A ANXA13 Missense_Mutation p.D210Y 0.18 deleterious(0.01) possibly_damaging(0.642) TCGA-F5-6814-01 8 124786393 124786393 G T FAM91A1 Missense_Mutation p.R49I 0.49 tolerated(0.09) benign(0.381) TCGA-F5-6814-01 8 125463253 125463253 T C TRMT12 Missense_Mutation p.F29L 0.23 tolerated(0.1) benign(0.169) TCGA-F5-6814-01 8 125464563 125464563 A T TRMT12 3'UTR 0.21 TCGA-F5-6814-01 8 125464870 125464870 A C TRMT12 3'UTR 0.18 TCGA-F5-6814-01 8 125465176 125465176 A C TRMT12 3'UTR 0.51 TCGA-F5-6814-01 8 125597371 125597371 C A MTSS1 Missense_Mutation p.K139N 0.27 deleterious(0) benign(0.022) TCGA-F5-6814-01 8 125988953 125988953 G T ZNF572 Missense_Mutation p.R148L 0.38 tolerated(0.49) possibly_damaging(0.891) TCGA-F5-6814-01 8 125989118 125989118 T C ZNF572 Missense_Mutation p.L203P 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 125989721 125989721 G T ZNF572 Missense_Mutation p.R404I 0.12 deleterious(0.04) probably_damaging(0.95) TCGA-F5-6814-01 8 126021413 126021413 G T SQLE Splice_Site p.X313_splice 0.09 TCGA-F5-6814-01 8 128752985 128752985 G A MYC Silent p.R382R 0.09 TCGA-F5-6814-01 8 12878564 12878564 G T KIAA1456 Nonsense_Mutation p.E126* 0.32 TCGA-F5-6814-01 8 12881248 12881248 G A KIAA1456 3'UTR 0.30 TCGA-F5-6814-01 8 12883162 12883162 T C KIAA1456 3'UTR 0.13 TCGA-F5-6814-01 8 12884489 12884489 G A KIAA1456 3'UTR 0.28 TCGA-F5-6814-01 8 12886044 12886044 G T KIAA1456 3'UTR 0.28 TCGA-F5-6814-01 8 12952303 12952303 T C DLC1 Missense_Mutation p.N1164S 0.08 tolerated(1) benign(0.032) TCGA-F5-6814-01 8 12952447 12952447 G A DLC1 Missense_Mutation p.S1116L 0.41 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 131124451 131124451 G A ASAP1 Missense_Mutation p.R764W 0.26 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 8 131130784 131130784 A C ASAP1 Missense_Mutation p.V582G 0.21 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 8 131812808 131812808 G T ADCY8 Missense_Mutation p.S975Y 0.47 tolerated(0.05) benign(0.43) TCGA-F5-6814-01 8 131949431 131949431 G A ADCY8 Missense_Mutation p.R457C 0.51 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 131955607 131955607 C T ADCY8 Missense_Mutation p.R448Q 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-F5-6814-01 8 132957062 132957062 G A EFR3A Missense_Mutation p.R53Q 0.33 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 8 132982784 132982784 C T EFR3A Silent p.F351F 0.46 TCGA-F5-6814-01 8 132998491 132998491 C A EFR3A Silent p.I640I 0.34 TCGA-F5-6814-01 8 133078208 133078208 G T HHLA1 3'Flank 0.34 TCGA-F5-6814-01 8 133092096 133092096 C A HHLA1 Missense_Mutation p.R301I 0.33 deleterious(0.02) possibly_damaging(0.839) TCGA-F5-6814-01 8 133099945 133099945 G A HHLA1 Missense_Mutation p.P247S 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 133142010 133142010 T G KCNQ3 Missense_Mutation p.K706N 0.13 tolerated(0.06) benign(0.193) TCGA-F5-6814-01 8 133175726 133175726 C A KCNQ3 Missense_Mutation p.E417D 0.52 tolerated(0.27) benign(0) TCGA-F5-6814-01 8 133187829 133187829 A G KCNQ3 Silent p.G268G 0.32 TCGA-F5-6814-01 8 133198378 133198378 T G KCNQ3 Missense_Mutation p.K146T 0.11 deleterious(0.04) benign(0.384) TCGA-F5-6814-01 8 133198380 133198380 G T KCNQ3 Missense_Mutation p.F145L 0.34 deleterious(0.01) benign(0.346) TCGA-F5-6814-01 8 133595948 133595948 T G LRRC6 Missense_Mutation p.N407H 0.11 tolerated(0.18) benign(0.014) TCGA-F5-6814-01 8 133645024 133645024 G T LRRC6 Silent p.G205G 0.08 TCGA-F5-6814-01 8 133790104 133790104 A C PHF20L1 Silent p.G10G 0.32 TCGA-F5-6814-01 8 133894829 133894829 T G TG Silent p.V287V 0.20 TCGA-F5-6814-01 8 133899196 133899196 G T TG Missense_Mutation p.D527Y 0.37 deleterious(0) possibly_damaging(0.886) TCGA-F5-6814-01 8 133910436 133910436 G T TG Missense_Mutation p.E1054D 0.32 tolerated(0.26) benign(0.401) TCGA-F5-6814-01 8 133984967 133984967 C T TG Silent p.F2060F 0.17 TCGA-F5-6814-01 8 134114867 134114867 C T TG Intron 0.38 TCGA-F5-6814-01 8 13424855 13424855 T G C8orf48 Missense_Mutation p.L119V 0.09 deleterious(0.02) possibly_damaging(0.814) TCGA-F5-6814-01 8 13425000 13425000 C A C8orf48 Missense_Mutation p.T167N 0.32 deleterious(0.01) possibly_damaging(0.463) TCGA-F5-6814-01 8 13425254 13425254 C T C8orf48 Missense_Mutation p.P252S 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 135622832 135622832 C A ZFAT Missense_Mutation p.R172I 0.31 deleterious(0) possibly_damaging(0.823) TCGA-F5-6814-01 8 139163535 139163535 C A FAM135B Missense_Mutation p.Q1061H 0.53 deleterious(0) probably_damaging(0.98) TCGA-F5-6814-01 8 139164685 139164685 C T FAM135B Missense_Mutation p.R678K 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-F5-6814-01 8 139189628 139189628 C T FAM135B Silent p.E355E 0.31 TCGA-F5-6814-01 8 139856366 139856366 G A COL22A1 Missense_Mutation p.R232C 0.14 unknown(0) TCGA-F5-6814-01 8 141549484 141549484 T G AGO2 Missense_Mutation p.I702L 0.24 deleterious(0) possibly_damaging(0.901) TCGA-F5-6814-01 8 141557724 141557724 C T AGO2 Missense_Mutation p.E531K 0.15 tolerated(0.12) possibly_damaging(0.619) TCGA-F5-6814-01 8 142221695 142221695 G T SLC45A4 Missense_Mutation p.S748Y 0.29 deleterious_low_confidence(0) benign(0.102) TCGA-F5-6814-01 8 142446019 142446019 G A PTP4A3 3'Flank 0.20 TCGA-F5-6814-01 8 143562885 143562885 A G BAI1 Missense_Mutation p.E648G 0.27 tolerated(0.09) benign(0.403) TCGA-F5-6814-01 8 143746397 143746397 C T JRK RNA 0.16 TCGA-F5-6814-01 8 143784369 143784369 G A LY6K Intron 0.24 TCGA-F5-6814-01 8 143784485 143784485 C A LY6K Intron 0.11 TCGA-F5-6814-01 8 143956571 143956571 C A CYP11B1 Splice_Site p.X401_splice 0.40 TCGA-F5-6814-01 8 144332252 144332252 C A ZFP41 Missense_Mutation p.P80H 0.17 tolerated(0.06) possibly_damaging(0.641) TCGA-F5-6814-01 8 144461655 144461655 C T RHPN1 Missense_Mutation p.R308C 0.45 deleterious(0.04) benign(0.007) TCGA-F5-6814-01 8 144734634 144734634 T G ZNF623 3'UTR 0.25 TCGA-F5-6814-01 8 144803738 144803738 G T MAPK15 Missense_Mutation p.K408N 0.31 tolerated(0.26) benign(0.045) TCGA-F5-6814-01 8 144919346 144919346 C T NRBP2 Silent p.R376R 0.52 TCGA-F5-6814-01 8 144991047 144991047 C T PLEC Silent p.A4451A 0.12 TCGA-F5-6814-01 8 145095933 145095933 T C SPATC1 Missense_Mutation p.S411P 0.47 tolerated(0.26) benign(0.007) TCGA-F5-6814-01 8 145106673 145106673 G A OPLAH Missense_Mutation p.T1226M 0.31 tolerated(0.25) benign(0.309) TCGA-F5-6814-01 8 145138372 145138372 T G GPAA1 Missense_Mutation p.L112R 0.09 deleterious(0.04) benign(0.184) TCGA-F5-6814-01 8 145620331 145620331 T C CPSF1 Missense_Mutation p.E1085G 0.14 deleterious(0) probably_damaging(0.97) TCGA-F5-6814-01 8 145662197 145662197 G A TONSL Silent p.F611F 0.31 TCGA-F5-6814-01 8 145745194 145745194 G A LRRC14 Missense_Mutation p.E29K 0.47 tolerated(0.05) possibly_damaging(0.662) TCGA-F5-6814-01 8 145947718 145947718 G T ZNF251 Missense_Mutation p.R443S 0.32 tolerated(1) benign(0) TCGA-F5-6814-01 8 145999075 145999075 T G ZNF34 Missense_Mutation p.K420T 0.35 tolerated(0.2) probably_damaging(0.992) TCGA-F5-6814-01 8 145999640 145999640 A C ZNF34 Missense_Mutation p.F232V 0.18 deleterious(0.01) benign(0.002) TCGA-F5-6814-01 8 146015195 146015195 C A RPL8 Missense_Mutation p.E256D 0.27 tolerated_low_confidence(0.45) benign(0.001) TCGA-F5-6814-01 8 146029127 146029127 G T ZNF517 Missense_Mutation p.E45D 0.10 tolerated(0.05) possibly_damaging(0.523) TCGA-F5-6814-01 8 146067469 146067469 G T ZNF7 Missense_Mutation p.R326I 0.54 deleterious(0.02) probably_damaging(0.991) TCGA-F5-6814-01 8 146067706 146067706 G T ZNF7 Missense_Mutation p.R405I 0.29 deleterious(0) benign(0.075) TCGA-F5-6814-01 8 16853195 16853195 C A FGF20 Missense_Mutation p.G120V 0.11 deleterious(0) probably_damaging(0.967) TCGA-F5-6814-01 8 17063200 17063200 C A ZDHHC2 Missense_Mutation p.F171L 0.13 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 8 17407864 17407864 T G SLC7A2 Silent p.P291P 0.32 TCGA-F5-6814-01 8 17794687 17794687 G T PCM1 Missense_Mutation p.K47N 0.22 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 17830190 17830190 A C PCM1 Missense_Mutation p.N1313H 0.12 deleterious(0.03) possibly_damaging(0.532) TCGA-F5-6814-01 8 17920698 17920698 G T ASAH1 Missense_Mutation p.L183I 0.40 tolerated(0.09) possibly_damaging(0.596) TCGA-F5-6814-01 8 18490148 18490148 A C PSD3 Missense_Mutation p.I795M 0.15 tolerated(0.16) probably_damaging(0.987) TCGA-F5-6814-01 8 1873487 1873487 G A ARHGEF10 Missense_Mutation p.D843N 0.35 deleterious(0.03) probably_damaging(0.954) TCGA-F5-6814-01 8 1905140 1905140 C T ARHGEF10 Missense_Mutation p.S1249L 0.29 tolerated(0.11) benign(0.019) TCGA-F5-6814-01 8 19263257 19263257 G T CSGALNACT1 3'UTR 0.24 TCGA-F5-6814-01 8 19277977 19277977 G A CSGALNACT1 Missense_Mutation p.R336W 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 19316073 19316073 G A CSGALNACT1 Missense_Mutation p.L239F 0.36 deleterious(0.01) possibly_damaging(0.827) TCGA-F5-6814-01 8 194647 194647 G T ZNF596 Missense_Mutation p.E84D 0.48 deleterious(0.03) probably_damaging(0.978) TCGA-F5-6814-01 8 1951389 1951389 C T KBTBD11 3'UTR 0.35 TCGA-F5-6814-01 8 195272 195272 A C ZNF596 Missense_Mutation p.K142T 0.29 deleterious(0.02) benign(0.276) TCGA-F5-6814-01 8 1953760 1953760 T G KBTBD11 3'UTR 0.18 TCGA-F5-6814-01 8 195775 195775 C A ZNF596 Missense_Mutation p.L310I 0.33 deleterious(0.01) benign(0.002) TCGA-F5-6814-01 8 19689622 19689622 G A INTS10 Splice_Site p.X459_splice 0.19 TCGA-F5-6814-01 8 20004779 20004779 T G SLC18A1 Missense_Mutation p.E485A 0.43 deleterious(0.05) possibly_damaging(0.626) TCGA-F5-6814-01 8 2033439 2033439 G A MYOM2 Missense_Mutation p.E521K 0.35 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 21925075 21925075 T C DMTN Missense_Mutation p.L44P 0.25 deleterious(0) probably_damaging(0.95) TCGA-F5-6814-01 8 21979187 21979187 C T HR Silent p.T714T 0.41 TCGA-F5-6814-01 8 21983176 21983176 G A HR Missense_Mutation p.A492V 0.50 tolerated(0.23) benign(0.02) TCGA-F5-6814-01 8 21986227 21986227 C A HR Nonsense_Mutation p.E153* 0.23 TCGA-F5-6814-01 8 21995986 21995986 A C REEP4 3'UTR 0.25 TCGA-F5-6814-01 8 22141676 22141676 G T PIWIL2 Nonsense_Mutation p.E212* 0.31 TCGA-F5-6814-01 8 22145151 22145151 T C PIWIL2 Missense_Mutation p.L285P 0.33 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 8 22272360 22272360 A C SLC39A14 Missense_Mutation p.Y232S 0.15 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 22442620 22442620 T G PDLIM2 Missense_Mutation p.F386V 0.13 deleterious(0.05) possibly_damaging(0.757) TCGA-F5-6814-01 8 22460105 22460105 G T C8orf58 Missense_Mutation p.R312I 0.30 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 22861991 22861991 T C RHOBTB2 Missense_Mutation p.I37T 0.30 deleterious(0) probably_damaging(0.954) TCGA-F5-6814-01 8 23115888 23115888 G A CHMP7 Missense_Mutation p.E296K 0.39 tolerated(0.27) benign(0.099) TCGA-F5-6814-01 8 23305332 23305332 G A ENTPD4 Silent p.I91I 0.10 TCGA-F5-6814-01 8 23423801 23423801 A G SLC25A37 Missense_Mutation p.T131A 0.20 tolerated(0.48) benign(0.038) TCGA-F5-6814-01 8 23708862 23708862 G T STC1 Silent p.V148V 0.37 TCGA-F5-6814-01 8 24167749 24167749 A T ADAM28 Missense_Mutation p.I101F 0.40 deleterious(0.03) possibly_damaging(0.807) TCGA-F5-6814-01 8 24168917 24168917 C A ADAM28 Missense_Mutation p.S117Y 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 24170943 24170943 T G ADAM28 Silent p.P142P 0.35 TCGA-F5-6814-01 8 24181349 24181349 T G ADAM28 Silent p.L241L 0.40 TCGA-F5-6814-01 8 24193265 24193265 G A ADAM28 Intron 0.42 TCGA-F5-6814-01 8 24255234 24255234 C A ADAMDEC1 Silent p.L222L 0.16 TCGA-F5-6814-01 8 24810220 24810220 T G CTD-2168K21.2 5'Flank 0.50 TCGA-F5-6814-01 8 24813515 24813515 C T CTD-2168K21.2 5'Flank 0.56 TCGA-F5-6814-01 8 25265597 25265597 A C DOCK5 Missense_Mutation p.K1731T 0.37 tolerated(0.17) possibly_damaging(0.881) TCGA-F5-6814-01 8 25346134 25346134 G T CDCA2 Nonsense_Mutation p.E534* 0.35 TCGA-F5-6814-01 8 25718851 25718851 G T EBF2 Missense_Mutation p.L380I 0.30 deleterious(0.03) possibly_damaging(0.658) TCGA-F5-6814-01 8 26196444 26196444 G T PPP2R2A Nonsense_Mutation p.E51* 0.20 TCGA-F5-6814-01 8 26227697 26227697 G A PPP2R2A Missense_Mutation p.R381K 0.10 tolerated(0.13) probably_damaging(0.942) TCGA-F5-6814-01 8 26227751 26227751 G A PPP2R2A Missense_Mutation p.R399H 0.10 tolerated(0.1) benign(0.008) TCGA-F5-6814-01 8 26237181 26237181 G T BNIP3L 5'Flank 0.40 TCGA-F5-6814-01 8 26237656 26237656 G A BNIP3L 5'Flank 0.33 TCGA-F5-6814-01 8 26623580 26623580 A C ADRA1A Intron 0.16 TCGA-F5-6814-01 8 26623606 26623606 A C ADRA1A Intron 0.19 TCGA-F5-6814-01 8 27303314 27303314 C A PTK2B Missense_Mutation p.P740T 0.47 tolerated(0.09) possibly_damaging(0.468) TCGA-F5-6814-01 8 27880890 27880890 C A NUGGC Nonsense_Mutation p.E779* 0.40 TCGA-F5-6814-01 8 27884570 27884570 C A NUGGC Splice_Site p.X719_splice 0.36 TCGA-F5-6814-01 8 27954825 27954825 G A ELP3 Missense_Mutation p.D37N 0.38 tolerated(1) benign(0.003) TCGA-F5-6814-01 8 28321179 28321179 A C FBXO16 Missense_Mutation p.L98V 0.27 tolerated(0.08) benign(0.311) TCGA-F5-6814-01 8 28321273 28321273 C A FBXO16 Silent p.S66S 0.51 TCGA-F5-6814-01 8 2836238 2836238 A C CSMD1 Missense_Mutation p.M2821R 0.09 benign(0.001) TCGA-F5-6814-01 8 2857541 2857541 T G CSMD1 Silent p.G2714G 0.18 TCGA-F5-6814-01 8 28588848 28588848 G A EXTL3 Missense_Mutation p.E753K 0.31 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 8 28928004 28928004 C T KIF13B 3'UTR 0.18 TCGA-F5-6814-01 8 29033633 29033633 C A KIF13B Missense_Mutation p.K299N 0.24 deleterious(0.03) possibly_damaging(0.729) TCGA-F5-6814-01 8 30404950 30404950 T A RBPMS 3'UTR 0.28 TCGA-F5-6814-01 8 30405012 30405012 A C RBPMS 3'UTR 0.24 TCGA-F5-6814-01 8 30609022 30609022 A G UBXN8 RNA 0.24 TCGA-F5-6814-01 8 30690758 30690758 G T TEX15 3'UTR 0.33 TCGA-F5-6814-01 8 30694529 30694529 G T TEX15 Missense_Mutation p.L2708I 0.31 tolerated(0.16) benign(0.067) TCGA-F5-6814-01 8 30701385 30701385 G A TEX15 Nonsense_Mutation p.R1717* 0.28 TCGA-F5-6814-01 8 30702930 30702930 A G TEX15 Missense_Mutation p.Y1202H 0.32 tolerated(0.4) benign(0.022) TCGA-F5-6814-01 8 30702935 30702935 C A TEX15 Missense_Mutation p.S1200I 0.25 deleterious(0) possibly_damaging(0.884) TCGA-F5-6814-01 8 30703773 30703773 G T TEX15 Missense_Mutation p.L921I 0.37 tolerated(0.46) benign(0.007) TCGA-F5-6814-01 8 30705335 30705335 A C TEX15 Missense_Mutation p.I400S 0.36 tolerated(0.25) benign(0.173) TCGA-F5-6814-01 8 30854099 30854099 G T PURG 3'UTR 0.11 TCGA-F5-6814-01 8 32453427 32453427 C A NRG1 Missense_Mutation p.S61Y 0.38 deleterious(0) probably_damaging(0.935) TCGA-F5-6814-01 8 32505376 32505376 G T NRG1 Intron 0.40 TCGA-F5-6814-01 8 3253757 3253757 T C CSMD1 Missense_Mutation p.D851G 0.32 probably_damaging(0.999) TCGA-F5-6814-01 8 32585582 32585582 G A NRG1 Silent p.S206S 0.27 TCGA-F5-6814-01 8 33364795 33364795 G A TTI2 Silent p.Y293Y 0.20 TCGA-F5-6814-01 8 35631992 35631992 A C UNC5D Missense_Mutation p.N885T 0.35 deleterious(0.02) benign(0.079) TCGA-F5-6814-01 8 36663870 36663870 T G KCNU1 Missense_Mutation p.I184M 0.34 deleterious(0.02) possibly_damaging(0.677) TCGA-F5-6814-01 8 36703369 36703369 C T KCNU1 Silent p.L615L 0.27 TCGA-F5-6814-01 8 36790484 36790484 T G KCNU1 Missense_Mutation p.F993C 0.20 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 8 36793138 36793138 C A KCNU1 Missense_Mutation p.F1050L 0.37 tolerated(0.67) benign(0.004) TCGA-F5-6814-01 8 37792655 37792655 T C GOT1L1 Silent p.G336G 0.25 TCGA-F5-6814-01 8 37823464 37823464 C T ADRB3 Missense_Mutation p.S175N 0.40 tolerated(0.32) possibly_damaging(0.889) TCGA-F5-6814-01 8 37978665 37978665 G A ASH2L Missense_Mutation p.R388Q 0.45 deleterious(0) possibly_damaging(0.776) TCGA-F5-6814-01 8 38107262 38107262 A C DDHD2 Missense_Mutation p.I429L 0.16 tolerated(0.2) probably_damaging(0.952) TCGA-F5-6814-01 8 38109747 38109747 G T DDHD2 Missense_Mutation p.R520I 0.32 deleterious(0.01) probably_damaging(0.992) TCGA-F5-6814-01 8 38124754 38124754 G A PPAPDC1B Intron 0.43 TCGA-F5-6814-01 8 38250170 38250170 G T LETM2 Missense_Mutation p.S6I 0.30 deleterious_low_confidence(0) possibly_damaging(0.463) TCGA-F5-6814-01 8 38275503 38275503 G T FGFR1 Silent p.V510V 0.26 TCGA-F5-6814-01 8 38369890 38369890 C A C8orf86 3'UTR 0.32 TCGA-F5-6814-01 8 38677337 38677337 A G TACC1 Missense_Mutation p.Q192R 0.17 tolerated(0.16) benign(0.013) TCGA-F5-6814-01 8 38678032 38678032 G A TACC1 Missense_Mutation p.E424K 0.40 deleterious(0.01) benign(0.158) TCGA-F5-6814-01 8 38793565 38793565 G A PLEKHA2 Silent p.S65S 0.21 TCGA-F5-6814-01 8 39004701 39004701 A C ADAM32 Missense_Mutation p.N85H 0.06 tolerated(0.66) benign(0.223) TCGA-F5-6814-01 8 39008983 39008983 G T ADAM32 Missense_Mutation p.K147N 0.44 tolerated(0.29) benign(0.013) TCGA-F5-6814-01 8 39468332 39468332 T G ADAM18 Intron 0.29 TCGA-F5-6814-01 8 40011404 40011404 G A C8orf4 3'UTR 0.21 TCGA-F5-6814-01 8 40011847 40011847 A C C8orf4 3'UTR 0.24 TCGA-F5-6814-01 8 41166222 41166222 C T SFRP1 Missense_Mutation p.E153K 0.38 tolerated(0.05) possibly_damaging(0.84) TCGA-F5-6814-01 8 41397444 41397444 G A GINS4 Silent p.A135A 0.12 TCGA-F5-6814-01 8 41456612 41456612 A C AGPAT6 5'UTR 0.12 TCGA-F5-6814-01 8 41552146 41552146 C A ANK1 Missense_Mutation p.E1138D 0.45 tolerated(0.09) benign(0.018) TCGA-F5-6814-01 8 41615563 41615563 G A ANK1 Silent p.T73T 0.15 TCGA-F5-6814-01 8 41798809 41798809 G A KAT6A Missense_Mutation p.R864W 0.23 probably_damaging(0.976) TCGA-F5-6814-01 8 41836271 41836271 C T KAT6A Missense_Mutation p.R311Q 0.26 possibly_damaging(0.85) TCGA-F5-6814-01 8 42026571 42026571 C T AP3M2 Nonsense_Mutation p.R417* 0.23 TCGA-F5-6814-01 8 42045535 42045535 C A PLAT Splice_Site p.X85_splice 0.50 TCGA-F5-6814-01 8 42163874 42163874 T G IKBKB Missense_Mutation p.I164S 0.16 deleterious(0) possibly_damaging(0.88) TCGA-F5-6814-01 8 42623612 42623612 G A CHRNA6 5'UTR 0.35 TCGA-F5-6814-01 8 43048928 43048928 A G HGSNAT Missense_Mutation p.D469G 0.28 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 8 43197053 43197053 G A POTEA Splice_Site 0.12 TCGA-F5-6814-01 8 43218190 43218190 A G AC022616.1 3'Flank 0.36 TCGA-F5-6814-01 8 43218252 43218252 G T AC022616.1 3'Flank 0.30 TCGA-F5-6814-01 8 442644 442644 C A TDRP Nonsense_Mutation p.E105* 0.16 TCGA-F5-6814-01 8 442685 442685 T G TDRP Missense_Mutation p.N91T 0.13 tolerated(0.24) benign(0.09) TCGA-F5-6814-01 8 48744419 48744419 A C PRKDC Missense_Mutation p.L2740V 0.11 possibly_damaging(0.565) TCGA-F5-6814-01 8 48749969 48749969 C T PRKDC Missense_Mutation p.R2521Q 0.19 benign(0.405) TCGA-F5-6814-01 8 48888337 48888337 T G MCM4 Missense_Mutation p.L810V 0.09 tolerated(0.26) benign(0.017) TCGA-F5-6814-01 8 49832843 49832843 G A SNAI2 Silent p.Y79Y 0.22 TCGA-F5-6814-01 8 52323966 52323966 T G PXDNL Missense_Mutation p.K636Q 0.20 tolerated(0.23) benign(0.024) TCGA-F5-6814-01 8 52384855 52384855 C T PXDNL Missense_Mutation p.R235Q 0.33 tolerated(0.24) possibly_damaging(0.663) TCGA-F5-6814-01 8 52396248 52396248 T G PXDNL Missense_Mutation p.K160T 0.28 tolerated(0.26) benign(0.034) TCGA-F5-6814-01 8 52746175 52746175 C T PCMTD1 Missense_Mutation p.R162Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 53062531 53062531 C T ST18 Missense_Mutation p.E605K 0.09 tolerated(0.1) benign(0.407) TCGA-F5-6814-01 8 53074054 53074054 T G ST18 Missense_Mutation p.K492T 0.23 deleterious(0) possibly_damaging(0.788) TCGA-F5-6814-01 8 53452435 53452435 A G FAM150A Missense_Mutation p.F94S 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 53540675 53540675 T C RB1CC1 Missense_Mutation p.Y1518C 0.10 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 53548619 53548619 G T RB1CC1 Missense_Mutation p.H1450N 0.21 tolerated(0.1) benign(0.013) TCGA-F5-6814-01 8 53853240 53853240 C T NPBWR1 Missense_Mutation p.A258V 0.15 deleterious(0.01) benign(0.025) TCGA-F5-6814-01 8 54141828 54141828 G T OPRK1 3'UTR 0.30 TCGA-F5-6814-01 8 54141903 54141903 T C OPRK1 Missense_Mutation p.D366G 0.22 tolerated(0.05) benign(0.024) TCGA-F5-6814-01 8 54163460 54163460 G A OPRK1 Silent p.D46D 0.29 TCGA-F5-6814-01 8 54866819 54866819 G T RGS20 Missense_Mutation p.E309D 0.38 deleterious(0.02) benign(0.135) TCGA-F5-6814-01 8 55537461 55537461 G T RP1 Missense_Mutation p.R340I 0.34 deleterious(0) benign(0.177) TCGA-F5-6814-01 8 55537475 55537475 G T RP1 Nonsense_Mutation p.E345* 0.23 TCGA-F5-6814-01 8 55538549 55538549 A C RP1 Missense_Mutation p.N703H 0.22 tolerated(0.27) benign(0.051) TCGA-F5-6814-01 8 55538772 55538772 G T RP1 Missense_Mutation p.R777I 0.33 tolerated(0.33) benign(0.08) TCGA-F5-6814-01 8 55539110 55539110 A G RP1 Missense_Mutation p.T890A 0.31 tolerated(0.13) benign(0.027) TCGA-F5-6814-01 8 55541288 55541288 G A RP1 Missense_Mutation p.E1616K 0.38 deleterious(0) possibly_damaging(0.651) TCGA-F5-6814-01 8 55541389 55541389 G A RP1 Silent p.G1649G 0.30 TCGA-F5-6814-01 8 55541600 55541600 G T RP1 Nonsense_Mutation p.E1720* 0.43 TCGA-F5-6814-01 8 56015707 56015707 G T XKR4 Missense_Mutation p.S220I 0.29 tolerated(0.09) possibly_damaging(0.899) TCGA-F5-6814-01 8 56436070 56436070 A C XKR4 Missense_Mutation p.T413P 0.24 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 8 56652775 56652775 C T TMEM68 Silent p.T230T 0.33 TCGA-F5-6814-01 8 56986296 56986296 T C RPS20 Silent p.E45E 0.42 TCGA-F5-6814-01 8 57025568 57025568 G A MOS Missense_Mutation p.A325V 0.24 tolerated(0.26) benign(0.098) TCGA-F5-6814-01 8 57025642 57025642 G A MOS Silent p.S300S 0.47 TCGA-F5-6814-01 8 57129052 57129052 A G CHCHD7 Missense_Mutation p.T64A 0.12 tolerated(1) benign(0.004) TCGA-F5-6814-01 8 59483459 59483459 T G SDCBP Missense_Mutation p.F22C 0.08 tolerated(0.17) possibly_damaging(0.572) TCGA-F5-6814-01 8 59496725 59496725 A G NSMAF Silent p.C929C 0.17 TCGA-F5-6814-01 8 59515789 59515789 T G NSMAF Missense_Mutation p.D373A 0.16 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 8 59728228 59728228 G A TOX Missense_Mutation p.S354L 0.24 deleterious(0.01) benign(0.053) TCGA-F5-6814-01 8 61654816 61654816 C A CHD7 Missense_Mutation p.F275L 0.15 benign(0.153) TCGA-F5-6814-01 8 61732619 61732619 C T CHD7 Silent p.D889D 0.09 TCGA-F5-6814-01 8 61778092 61778092 C T CHD7 Missense_Mutation p.S2865L 0.22 benign(0.143) TCGA-F5-6814-01 8 62577708 62577708 A G ASPH Intron 0.17 TCGA-F5-6814-01 8 62580794 62580794 T G ASPH Intron 0.40 TCGA-F5-6814-01 8 63939791 63939791 T C GGH Silent p.R103R 0.22 TCGA-F5-6814-01 8 63973827 63973827 G T TTPA Missense_Mutation p.S274Y 0.18 deleterious(0) probably_damaging(0.943) TCGA-F5-6814-01 8 64099791 64099791 G T YTHDF3 Missense_Mutation p.D407Y 0.25 deleterious(0) benign(0.265) TCGA-F5-6814-01 8 65494430 65494430 G T BHLHE22 Missense_Mutation p.E361D 0.25 tolerated_low_confidence(0.71) benign(0.029) TCGA-F5-6814-01 8 65495946 65495946 T C BHLHE22 3'UTR 0.37 TCGA-F5-6814-01 8 65495950 65495950 G T BHLHE22 3'UTR 0.14 TCGA-F5-6814-01 8 65495998 65495998 A C BHLHE22 3'UTR 0.11 TCGA-F5-6814-01 8 65509392 65509392 C A CYP7B1 Missense_Mutation p.G443V 0.16 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 6614749 6614749 T G AGPAT5 Missense_Mutation p.V312G 0.23 tolerated(0.37) benign(0.007) TCGA-F5-6814-01 8 66637113 66637113 C T PDE7A Missense_Mutation p.D322N 0.43 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 66963815 66963815 G A DNAJC5B Silent p.R11R 0.48 TCGA-F5-6814-01 8 66989064 66989064 G A DNAJC5B Missense_Mutation p.E97K 0.16 deleterious(0.02) possibly_damaging(0.67) TCGA-F5-6814-01 8 66992635 66992635 C A DNAJC5B Silent p.L119L 0.31 TCGA-F5-6814-01 8 67066475 67066475 C A TRIM55 Nonsense_Mutation p.S477* 0.34 TCGA-F5-6814-01 8 6728318 6728318 C A DEFB1 Missense_Mutation p.R31I 0.41 deleterious(0) possibly_damaging(0.766) TCGA-F5-6814-01 8 67488240 67488240 A C MYBL1 Splice_Site p.X490_splice 0.18 TCGA-F5-6814-01 8 67509658 67509658 G T MYBL1 Missense_Mutation p.S140Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 8 67591962 67591962 G T C8orf44 Nonsense_Mutation p.E85* 0.11 TCGA-F5-6814-01 8 67791088 67791088 C T MCMDC2 Missense_Mutation p.R215C 0.11 tolerated(0.06) benign(0.001) TCGA-F5-6814-01 8 68049769 68049769 A G CSPP1 Missense_Mutation p.R631G 0.12 deleterious(0) possibly_damaging(0.547) TCGA-F5-6814-01 8 68062140 68062140 A C CSPP1 Missense_Mutation p.N695H 0.17 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 8 68087520 68087520 T G CSPP1 Intron 0.42 TCGA-F5-6814-01 8 68111261 68111261 G A ARFGEF1 Missense_Mutation p.R1820C 0.12 deleterious(0) probably_damaging(0.983) TCGA-F5-6814-01 8 68116980 68116980 C T ARFGEF1 Missense_Mutation p.D1632N 0.35 tolerated(0.14) probably_damaging(1) TCGA-F5-6814-01 8 68137247 68137247 C T ARFGEF1 Missense_Mutation p.D1367N 0.21 tolerated(0.19) possibly_damaging(0.895) TCGA-F5-6814-01 8 68150974 68150974 T C ARFGEF1 Missense_Mutation p.H1045R 0.35 tolerated(0.35) possibly_damaging(0.724) TCGA-F5-6814-01 8 68163687 68163687 T C ARFGEF1 Splice_Site p.X900_splice 0.11 TCGA-F5-6814-01 8 68178405 68178405 G T ARFGEF1 Silent p.I653I 0.19 TCGA-F5-6814-01 8 68179373 68179373 T G ARFGEF1 Missense_Mutation p.I589L 0.35 tolerated(0.06) probably_damaging(0.995) TCGA-F5-6814-01 8 68658296 68658296 C A CPA6 Missense_Mutation p.K23N 0.33 tolerated(0.51) benign(0.001) TCGA-F5-6814-01 8 68942786 68942786 G A PREX2 Missense_Mutation p.A200T 0.27 deleterious(0.04) benign(0.298) TCGA-F5-6814-01 8 68972915 68972915 G A PREX2 Missense_Mutation p.E414K 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 8 68993052 68993052 A C PREX2 Silent p.V619V 0.39 TCGA-F5-6814-01 8 69012059 69012059 G T PREX2 Missense_Mutation p.R899I 0.33 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 8 69358669 69358669 C A C8orf34 Missense_Mutation p.S194Y 0.40 tolerated(0.06) benign(0.22) TCGA-F5-6814-01 8 69358736 69358736 A G C8orf34 Intron 0.16 TCGA-F5-6814-01 8 69445342 69445342 G T C8orf34 Nonsense_Mutation p.E355* 0.44 TCGA-F5-6814-01 8 69445455 69445455 G A C8orf34 Intron 0.30 TCGA-F5-6814-01 8 69699702 69699702 G A C8orf34 Missense_Mutation p.V494I 0.24 tolerated_low_confidence(0.14) possibly_damaging(0.672) TCGA-F5-6814-01 8 70512837 70512837 G A SULF1 Splice_Site p.X245_splice 0.20 TCGA-F5-6814-01 8 70515839 70515839 C T SULF1 Nonsense_Mutation p.R399* 0.44 TCGA-F5-6814-01 8 70550790 70550790 C T SULF1 Missense_Mutation p.R780C 0.24 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 8 70591834 70591834 G A SLCO5A1 Silent p.C601C 0.09 TCGA-F5-6814-01 8 70667684 70667684 C T SLCO5A1 Silent p.S411S 0.10 TCGA-F5-6814-01 8 70667685 70667685 G A SLCO5A1 Missense_Mutation p.S411L 0.44 deleterious(0.04) benign(0.009) TCGA-F5-6814-01 8 70744594 70744594 G T SLCO5A1 Missense_Mutation p.F105L 0.19 tolerated_low_confidence(0.7) benign(0) TCGA-F5-6814-01 8 71495501 71495501 T G TRAM1 Missense_Mutation p.N317H 0.39 tolerated(0.46) benign(0.248) TCGA-F5-6814-01 8 71499182 71499182 G T TRAM1 Missense_Mutation p.L232I 0.35 tolerated(0.39) benign(0.12) TCGA-F5-6814-01 8 71593311 71593311 G T XKR9 Missense_Mutation p.Q6H 0.48 tolerated(0.55) benign(0.003) TCGA-F5-6814-01 8 72268762 72268762 A C EYA1 Intron 0.19 TCGA-F5-6814-01 8 72755827 72755827 G A RP11-383H13.1 Missense_Mutation p.R64H 0.75 unknown(0) TCGA-F5-6814-01 8 72755855 72755855 G A RP11-383H13.1 Silent p.P73P 0.26 TCGA-F5-6814-01 8 72963069 72963069 G A TRPA1 Missense_Mutation p.P617S 0.25 tolerated(0.51) benign(0.017) TCGA-F5-6814-01 8 7340213 7340213 G A DEFB106B Silent p.C37C 0.28 TCGA-F5-6814-01 8 73480388 73480388 G T KCNB2 Missense_Mutation p.R140I 0.43 deleterious(0) possibly_damaging(0.818) TCGA-F5-6814-01 8 73849671 73849671 A G KCNB2 Missense_Mutation p.D694G 0.45 tolerated_low_confidence(0.21) benign(0.001) TCGA-F5-6814-01 8 73850302 73850302 T C KCNB2 Silent p.C904C 0.21 TCGA-F5-6814-01 8 73944329 73944329 G A TERF1 Missense_Mutation p.D334N 0.23 tolerated(0.14) benign(0.027) TCGA-F5-6814-01 8 74742627 74742627 A C UBE2W Missense_Mutation p.N72K 0.27 tolerated(0.07) benign(0.035) TCGA-F5-6814-01 8 74903655 74903655 T C LY96 5'UTR 0.09 TCGA-F5-6814-01 8 75227454 75227454 C T JPH1 Missense_Mutation p.D261N 0.28 deleterious(0) probably_damaging(0.932) TCGA-F5-6814-01 8 75274206 75274206 G A GDAP1 Missense_Mutation p.R191Q 0.39 tolerated(0.25) probably_damaging(0.998) TCGA-F5-6814-01 8 75737716 75737716 C T PI15 Missense_Mutation p.R78W 0.29 deleterious(0.02) probably_damaging(1) TCGA-F5-6814-01 8 75928820 75928820 C T CRISPLD1 Missense_Mutation p.P250S 0.08 tolerated(0.25) benign(0.001) TCGA-F5-6814-01 8 7721068 7721068 G T SPAG11A 3'UTR 0.09 TCGA-F5-6814-01 8 77616799 77616799 A C ZFHX4 Missense_Mutation p.K159T 0.41 possibly_damaging(0.607) TCGA-F5-6814-01 8 77617305 77617305 G T ZFHX4 Missense_Mutation p.D328Y 0.30 probably_damaging(0.934) TCGA-F5-6814-01 8 77617419 77617419 G A ZFHX4 Missense_Mutation p.A366T 0.38 possibly_damaging(0.695) TCGA-F5-6814-01 8 77764048 77764048 C A ZFHX4 Missense_Mutation p.H1631N 0.33 benign(0.005) TCGA-F5-6814-01 8 80677378 80677378 A C HEY1 3'UTR 0.11 TCGA-F5-6814-01 8 80679250 80679250 C A HEY1 Missense_Mutation p.E81D 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 8 81905341 81905341 T C PAG1 Missense_Mutation p.D41G 0.50 tolerated(0.06) possibly_damaging(0.539) TCGA-F5-6814-01 8 82196167 82196167 A C FABP5 Missense_Mutation p.E104D 0.37 deleterious(0.02) benign(0.059) TCGA-F5-6814-01 8 82593000 82593000 T G IMPA1 Missense_Mutation p.K87Q 0.33 tolerated(0.34) benign(0.002) TCGA-F5-6814-01 8 82605907 82605907 C A SLC10A5 Missense_Mutation p.R434I 0.31 deleterious(0) benign(0.146) TCGA-F5-6814-01 8 82606940 82606940 G T SLC10A5 Missense_Mutation p.L90M 0.20 deleterious(0.01) probably_damaging(0.933) TCGA-F5-6814-01 8 82727610 82727610 G T SNX16 Missense_Mutation p.L211I 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 8 86022388 86022388 T C LRRCC1 Missense_Mutation p.S117P 0.13 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 8 86118431 86118431 G T E2F5 Nonsense_Mutation p.E176* 0.11 TCGA-F5-6814-01 8 86163043 86163043 G T CA13 Nonsense_Mutation p.E38* 0.32 TCGA-F5-6814-01 8 87151852 87151852 G A ATP6V0D2 Missense_Mutation p.E157K 0.40 deleterious(0) probably_damaging(0.934) TCGA-F5-6814-01 8 87393013 87393013 A G WWP1 Silent p.E43E 0.13 TCGA-F5-6814-01 8 87442935 87442935 T C WWP1 Silent p.L448L 0.16 TCGA-F5-6814-01 8 87464835 87464835 A C WWP1 Missense_Mutation p.K774T 0.17 deleterious(0.03) probably_damaging(0.944) TCGA-F5-6814-01 8 87486442 87486442 A C RMDN1 3'UTR 0.32 TCGA-F5-6814-01 8 87588033 87588033 T C CNGB3 Silent p.%3D 0.23 TCGA-F5-6814-01 8 87656905 87656905 A C CNGB3 Missense_Mutation p.F334V 0.44 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 87951977 87951977 G T CNBD1 Missense_Mutation p.K142N 0.18 deleterious(0) possibly_damaging(0.873) TCGA-F5-6814-01 8 8869066 8869066 T C ERI1 Missense_Mutation p.V101A 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-F5-6814-01 8 8887397 8887397 T G ERI1 Missense_Mutation p.N301K 0.45 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 88884210 88884210 A G DCAF4L2 3'UTR 0.25 TCGA-F5-6814-01 8 88885556 88885556 G A DCAF4L2 Missense_Mutation p.T215M 0.35 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 8 89053710 89053710 G A MMP16 Silent p.R601R 0.10 TCGA-F5-6814-01 8 89128859 89128859 A C MMP16 Missense_Mutation p.N320K 0.10 tolerated(0.61) benign(0.114) TCGA-F5-6814-01 8 89209467 89209467 C A MMP16 Missense_Mutation p.E67D 0.26 deleterious(0.01) benign(0.186) TCGA-F5-6814-01 8 90802621 90802621 T G RIPK2 Missense_Mutation p.L534V 0.14 tolerated_low_confidence(0.05) benign(0.004) TCGA-F5-6814-01 8 90937608 90937608 G T OSGIN2 Nonsense_Mutation p.E500* 0.34 TCGA-F5-6814-01 8 90947656 90947656 G T NBN 3'UTR 0.48 TCGA-F5-6814-01 8 90967761 90967761 C A NBN Nonsense_Mutation p.E383* 0.12 TCGA-F5-6814-01 8 90976684 90976684 G T NBN Missense_Mutation p.F316L 0.43 deleterious(0) possibly_damaging(0.829) TCGA-F5-6814-01 8 91049071 91049071 G A DECR1 Missense_Mutation p.A190T 0.08 tolerated(0.07) probably_damaging(0.992) TCGA-F5-6814-01 8 91095014 91095014 G A CALB1 5'UTR 0.09 TCGA-F5-6814-01 8 91937834 91937834 G T NECAB1 Missense_Mutation p.R189I 0.39 deleterious(0) possibly_damaging(0.855) TCGA-F5-6814-01 8 91946559 91946559 G T NECAB1 Nonsense_Mutation p.E241* 0.37 TCGA-F5-6814-01 8 92097053 92097053 C T OTUD6B Missense_Mutation p.S310L 0.32 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 92114963 92114963 A C LRRC69 Missense_Mutation p.K25T 0.08 deleterious(0.02) benign(0.393) TCGA-F5-6814-01 8 92355585 92355585 T G SLC26A7 Missense_Mutation p.F344C 0.10 deleterious(0.01) possibly_damaging(0.839) TCGA-F5-6814-01 8 92375736 92375736 G A SLC26A7 Missense_Mutation p.M486I 0.30 tolerated(0.23) benign(0.002) TCGA-F5-6814-01 8 92375737 92375737 G T SLC26A7 Nonsense_Mutation p.E487* 0.30 TCGA-F5-6814-01 8 94745563 94745563 T G RBM12B 3'UTR 0.50 TCGA-F5-6814-01 8 94746042 94746042 C T RBM12B Missense_Mutation p.R866K 0.44 deleterious(0.02) possibly_damaging(0.815) TCGA-F5-6814-01 8 94747586 94747586 A G RBM12B Silent p.R351R 0.14 TCGA-F5-6814-01 8 94772217 94772217 A C TMEM67 Intron 0.11 TCGA-F5-6814-01 8 94776133 94776133 A G TMEM67 Missense_Mutation p.E157G 0.27 tolerated(0.2) possibly_damaging(0.718) TCGA-F5-6814-01 8 94935248 94935248 G T PDP1 Nonsense_Mutation p.E346* 0.30 TCGA-F5-6814-01 8 95186211 95186211 C T CDH17 Silent p.L199L 0.45 TCGA-F5-6814-01 8 95262705 95262705 G A GEM Missense_Mutation p.R242W 0.32 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 8 95518864 95518864 C A KIAA1429 Nonsense_Mutation p.E1321* 0.33 TCGA-F5-6814-01 8 95655552 95655552 G T ESRP1 Nonsense_Mutation p.E95* 0.34 TCGA-F5-6814-01 8 95777508 95777508 T G DPY19L4 Nonsense_Mutation p.L323* 0.31 TCGA-F5-6814-01 8 95782778 95782778 C A DPY19L4 Missense_Mutation p.S478Y 0.38 tolerated(1) benign(0.038) TCGA-F5-6814-01 8 95837220 95837220 G T INTS8 Missense_Mutation p.R77I 0.35 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 8 9584187 9584187 G A TNKS Missense_Mutation p.R653Q 0.44 tolerated(1) benign(0.016) TCGA-F5-6814-01 8 95844389 95844389 A G INTS8 Missense_Mutation p.E247G 0.15 deleterious(0.04) benign(0.001) TCGA-F5-6814-01 8 95866076 95866076 A C INTS8 Missense_Mutation p.K562T 0.08 tolerated(0.11) probably_damaging(0.982) TCGA-F5-6814-01 8 95884112 95884112 C T INTS8 Silent p.N805N 0.27 TCGA-F5-6814-01 8 95905188 95905188 G A CCNE2 Missense_Mutation p.P59S 0.37 tolerated(1) benign(0.008) TCGA-F5-6814-01 8 96057851 96057851 C A NDUFAF6 Missense_Mutation p.L186I 0.18 tolerated(0.11) benign(0.314) TCGA-F5-6814-01 8 96166450 96166450 G T PLEKHF2 Missense_Mutation p.D60Y 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 8 9623931 9623931 C T TNKS Missense_Mutation p.H1246Y 0.33 tolerated(0.25) benign(0.362) TCGA-F5-6814-01 8 96259868 96259868 G A C8orf37 Missense_Mutation p.R201C 0.42 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 8 97316360 97316360 C A PTDSS1 Missense_Mutation p.S282Y 0.41 tolerated(0.1) probably_damaging(1) TCGA-F5-6814-01 8 97621657 97621657 C A SDC2 Missense_Mutation p.L163I 0.39 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 8 98155282 98155282 C T CPQ Silent p.F430F 0.30 TCGA-F5-6814-01 8 98289178 98289178 C T TSPYL5 Missense_Mutation p.D299N 0.42 tolerated(0.29) benign(0.301) TCGA-F5-6814-01 8 98973659 98973659 G A MATN2 Missense_Mutation p.D287N 0.25 tolerated(0.33) benign(0.093) TCGA-F5-6814-01 8 99042791 99042791 T C MATN2 Missense_Mutation p.F820L 0.37 deleterious(0.01) benign(0.248) TCGA-F5-6814-01 8 99045857 99045857 A C MATN2 Missense_Mutation p.N929H 0.37 deleterious_low_confidence(0.01) probably_damaging(0.928) TCGA-F5-6814-01 8 99441883 99441883 G A KCNS2 3'UTR 0.41 TCGA-F5-6814-01 8 99442173 99442173 G A KCNS2 3'UTR 0.44 TCGA-F5-6814-01 9 100000819 100000819 C T CCDC180 5'UTR 0.12 TCGA-F5-6814-01 9 100070009 100070009 C T CCDC180 Intron 0.26 TCGA-F5-6814-01 9 100071796 100071796 C T CCDC180 Missense_Mutation p.T101I 0.27 tolerated(1) benign(0.004) TCGA-F5-6814-01 9 100086190 100086190 G A CCDC180 Intron 0.26 TCGA-F5-6814-01 9 100105710 100105710 T G CCDC180 Missense_Mutation p.F832C 0.26 deleterious(0) benign(0.003) TCGA-F5-6814-01 9 100122293 100122293 C T CCDC180 Silent p.F1175F 0.34 TCGA-F5-6814-01 9 100124558 100124558 C A CCDC180 Missense_Mutation p.S1290Y 0.15 tolerated(1) benign(0.001) TCGA-F5-6814-01 9 100245343 100245343 G T TDRD7 Missense_Mutation p.E875D 0.28 tolerated(0.61) benign(0.001) TCGA-F5-6814-01 9 100423298 100423298 A C NCBP1 Missense_Mutation p.E516D 0.40 tolerated(0.12) benign(0.168) TCGA-F5-6814-01 9 100616394 100616394 C T FOXE1 Silent p.I66I 0.31 TCGA-F5-6814-01 9 100672810 100672810 C T C9orf156 Silent p.P166P 0.15 TCGA-F5-6814-01 9 100675692 100675692 T G C9orf156 Missense_Mutation p.K134Q 0.30 deleterious(0.02) possibly_damaging(0.593) TCGA-F5-6814-01 9 100692416 100692416 C T HEMGN Missense_Mutation p.E421K 0.29 deleterious(0.01) probably_damaging(0.953) TCGA-F5-6814-01 9 100693400 100693400 C A HEMGN Nonsense_Mutation p.E93* 0.22 TCGA-F5-6814-01 9 100756916 100756916 C T ANP32B Nonsense_Mutation p.R20* 0.18 TCGA-F5-6814-01 9 100888861 100888861 G A CORO2A Silent p.F472F 0.12 TCGA-F5-6814-01 9 101053021 101053021 G A GABBR2 Missense_Mutation p.R891W 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 9 101065623 101065623 G T GABBR2 Missense_Mutation p.S771Y 0.11 tolerated(0.07) possibly_damaging(0.896) TCGA-F5-6814-01 9 101304259 101304259 C T GABBR2 Missense_Mutation p.V176I 0.41 deleterious(0.03) possibly_damaging(0.904) TCGA-F5-6814-01 9 101498814 101498814 C T ANKS6 Missense_Mutation p.S868N 0.26 tolerated_low_confidence(0.44) benign(0) TCGA-F5-6814-01 9 101594228 101594228 C T GALNT12 Silent p.V302V 0.19 TCGA-F5-6814-01 9 101611281 101611281 G A GALNT12 Silent p.A551A 0.40 TCGA-F5-6814-01 9 101797632 101797632 G A COL15A1 Missense_Mutation p.D741N 0.52 deleterious(0.04) benign(0.05) TCGA-F5-6814-01 9 101811997 101811997 C T COL15A1 Missense_Mutation p.P940L 0.21 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 9 102595021 102595021 C T NR4A3 Silent p.C345C 0.24 TCGA-F5-6814-01 9 102595786 102595786 T C NR4A3 Intron 0.20 TCGA-F5-6814-01 9 102625919 102625919 G T NR4A3 Nonsense_Mutation p.E562* 0.25 TCGA-F5-6814-01 9 102625927 102625927 G T NR4A3 Missense_Mutation p.K564N 0.08 deleterious(0) benign(0.061) TCGA-F5-6814-01 9 103111482 103111482 C A TEX10 Missense_Mutation p.R55I 0.18 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 103111626 103111626 C T TEX10 Missense_Mutation p.R7H 0.22 tolerated(0.3) benign(0.021) TCGA-F5-6814-01 9 103261069 103261069 C T TMEFF1 Silent p.D73D 0.24 TCGA-F5-6814-01 9 104071511 104071511 T C LPPR1 Missense_Mutation p.L135P 0.12 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 104086362 104086363 - T LPPR1 3'UTR 0.27 TCGA-F5-6814-01 9 104133367 104133367 A C BAAT Missense_Mutation p.L107R 0.11 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 9 104133522 104133522 G A BAAT Silent p.F55F 0.26 TCGA-F5-6814-01 9 104171888 104171888 C A ZNF189 Missense_Mutation p.S613Y 0.26 tolerated(0.07) probably_damaging(0.99) TCGA-F5-6814-01 9 104239413 104239413 C A TMEM246 5'UTR 0.38 TCGA-F5-6814-01 9 104302597 104302597 G A RNF20 Missense_Mutation p.R81Q 0.36 deleterious(0.03) benign(0) TCGA-F5-6814-01 9 104449459 104449459 A G GRIN3A Silent p.S241S 0.41 TCGA-F5-6814-01 9 104499750 104499750 G A GRIN3A Missense_Mutation p.S171L 0.48 deleterious(0.02) benign(0.085) TCGA-F5-6814-01 9 107266734 107266734 G A OR13F1 Missense_Mutation p.S64N 0.09 deleterious(0) benign(0.357) TCGA-F5-6814-01 9 107288997 107288997 C T OR13C4 Missense_Mutation p.R165Q 0.44 tolerated(1) benign(0.023) TCGA-F5-6814-01 9 107331776 107331776 A G OR13C8 Missense_Mutation p.T110A 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6814-01 9 107379553 107379553 C T OR13C9 Silent p.P311P 0.28 TCGA-F5-6814-01 9 107546688 107546688 C A ABCA1 Missense_Mutation p.D2232Y 0.11 deleterious(0) probably_damaging(0.935) TCGA-F5-6814-01 9 107547817 107547817 T G ABCA1 Missense_Mutation p.K2169Q 0.35 tolerated(0.06) probably_damaging(0.986) TCGA-F5-6814-01 9 107599806 107599806 G T ABCA1 Missense_Mutation p.P366H 0.22 deleterious(0) possibly_damaging(0.687) TCGA-F5-6814-01 9 107602635 107602635 C G ABCA1 Missense_Mutation p.D327H 0.09 deleterious(0) probably_damaging(0.971) TCGA-F5-6814-01 9 108097917 108097917 G A SLC44A1 Missense_Mutation p.A115T 0.10 tolerated(0.05) benign(0.004) TCGA-F5-6814-01 9 108366713 108366713 A C FKTN Missense_Mutation p.D196A 0.31 deleterious(0.01) benign(0.189) TCGA-F5-6814-01 9 108536235 108536235 G A TMEM38B Silent p.P250P 0.46 TCGA-F5-6814-01 9 109687392 109687392 G T ZNF462 Missense_Mutation p.G400V 0.56 probably_damaging(0.953) TCGA-F5-6814-01 9 109688107 109688107 C T ZNF462 Silent p.S638S 0.22 TCGA-F5-6814-01 9 109688180 109688180 C A ZNF462 Missense_Mutation p.L663I 0.50 probably_damaging(0.984) TCGA-F5-6814-01 9 110064348 110064348 G T RAD23B Nonsense_Mutation p.E61* 0.36 TCGA-F5-6814-01 9 110087203 110087203 G A RAD23B Missense_Mutation p.G345D 0.22 tolerated(0.19) benign(0.248) TCGA-F5-6814-01 9 111625389 111625389 G A ACTL7A Missense_Mutation p.E263K 0.25 tolerated(0.51) benign(0.015) TCGA-F5-6814-01 9 111659468 111659468 C T IKBKAP Missense_Mutation p.D821N 0.22 deleterious(0.04) probably_damaging(0.998) TCGA-F5-6814-01 9 111714493 111714493 T C CTNNAL1 Missense_Mutation p.T611A 0.40 deleterious(0) possibly_damaging(0.728) TCGA-F5-6814-01 9 111714580 111714580 C T CTNNAL1 Missense_Mutation p.E582K 0.19 deleterious(0.01) probably_damaging(0.935) TCGA-F5-6814-01 9 111745447 111745447 A C CTNNAL1 Missense_Mutation p.F293C 0.29 tolerated(0.14) benign(0.015) TCGA-F5-6814-01 9 111899866 111899866 C T FRRS1L Missense_Mutation p.E302K 0.33 deleterious(0.05) benign(0.057) TCGA-F5-6814-01 9 111965972 111965972 C A EPB41L4B Missense_Mutation p.K639N 0.42 deleterious(0.02) possibly_damaging(0.784) TCGA-F5-6814-01 9 112029784 112029784 C T EPB41L4B Missense_Mutation p.E168K 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 9 113065912 113065912 G A TXNDC8 3'UTR 0.30 TCGA-F5-6814-01 9 113170076 113170076 A G SVEP1 Missense_Mutation p.S2602P 0.40 probably_damaging(1) TCGA-F5-6814-01 9 113191507 113191507 G T SVEP1 Missense_Mutation p.P1908Q 0.11 probably_damaging(1) TCGA-F5-6814-01 9 113205926 113205926 A C SVEP1 Missense_Mutation p.I1513S 0.10 probably_damaging(1) TCGA-F5-6814-01 9 113205993 113205993 G T SVEP1 Missense_Mutation p.L1491I 0.50 benign(0.232) TCGA-F5-6814-01 9 113213639 113213639 A C SVEP1 Silent p.P1277P 0.20 TCGA-F5-6814-01 9 113238472 113238472 G T SVEP1 Intron 0.43 TCGA-F5-6814-01 9 113265353 113265353 T C SVEP1 Missense_Mutation p.N483S 0.20 benign(0.256) TCGA-F5-6814-01 9 113431197 113431197 G A MUSK Missense_Mutation p.V5I 0.25 tolerated_low_confidence(0.33) benign(0.002) TCGA-F5-6814-01 9 113538086 113538086 A G MUSK Silent p.V401V 0.28 TCGA-F5-6814-01 9 113637834 113637834 G A LPAR1 Missense_Mutation p.T321I 0.20 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 9 114202704 114202704 T G KIAA0368 Missense_Mutation p.T341P 0.46 deleterious(0.05) possibly_damaging(0.804) TCGA-F5-6814-01 9 114304365 114304365 C A ZNF483 Missense_Mutation p.H384N 0.34 tolerated(0.1) benign(0.003) TCGA-F5-6814-01 9 114337091 114337091 C T PTGR1 Missense_Mutation p.G228D 0.13 tolerated(0.6) benign(0.007) TCGA-F5-6814-01 9 114338679 114338679 C A PTGR1 Intron 0.22 TCGA-F5-6814-01 9 114409529 114409529 C T DNAJC25 Missense_Mutation p.S160L 0.35 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 114423992 114423992 C A GNG10 Silent p.I26I 0.55 TCGA-F5-6814-01 9 114454370 114454370 G T C9orf84 Missense_Mutation p.S1232Y 0.41 tolerated(0.06) probably_damaging(0.955) TCGA-F5-6814-01 9 114508567 114508567 C A C9orf84 Silent p.V278V 0.15 TCGA-F5-6814-01 9 114518729 114518729 G T C9orf84 Missense_Mutation p.F182L 0.16 tolerated(0.34) benign(0.009) TCGA-F5-6814-01 9 114521105 114521105 T C C9orf84 Missense_Mutation p.I92V 0.13 tolerated(0.12) benign(0.007) TCGA-F5-6814-01 9 114548272 114548272 C T C9orf84 5'UTR 0.46 TCGA-F5-6814-01 9 114548273 114548273 G A C9orf84 5'UTR 0.37 TCGA-F5-6814-01 9 114911577 114911577 C T SUSD1 Missense_Mutation p.R107Q 0.43 tolerated(0.13) probably_damaging(0.999) TCGA-F5-6814-01 9 115759854 115759854 C A ZNF883 RNA 0.28 TCGA-F5-6814-01 9 115805204 115805204 C A ZFP37 Missense_Mutation p.R565I 0.29 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 115936739 115936739 C T FKBP15 Missense_Mutation p.R783Q 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-F5-6814-01 9 116020989 116020989 T C SLC31A1 Missense_Mutation p.F73S 0.09 deleterious(0.04) possibly_damaging(0.725) TCGA-F5-6814-01 9 116034720 116034720 C T CDC26 Missense_Mutation p.R23Q 0.44 tolerated(0.09) benign(0.019) TCGA-F5-6814-01 9 116083831 116083831 C A WDR31 Nonsense_Mutation p.E200* 0.31 TCGA-F5-6814-01 9 116172520 116172520 G T POLE3 Silent p.I18I 0.41 TCGA-F5-6814-01 9 116259667 116259667 G A RGS3 Missense_Mutation p.R275Q 0.25 tolerated(0.06) possibly_damaging(0.482) TCGA-F5-6814-01 9 116825011 116825011 C A AMBP Nonsense_Mutation p.E211* 0.21 TCGA-F5-6814-01 9 116931104 116931104 G T COL27A1 Missense_Mutation p.E423D 0.40 unknown(0) TCGA-F5-6814-01 9 117068882 117068882 A C COL27A1 Missense_Mutation p.Q1674P 0.32 unknown(0) TCGA-F5-6814-01 9 117354909 117354909 G T ATP6V1G1 Nonsense_Mutation p.E54* 0.15 TCGA-F5-6814-01 9 117379429 117379429 G T C9orf91 5'UTR 0.49 TCGA-F5-6814-01 9 117553146 117553146 G A TNFSF15 Silent p.F114F 0.38 TCGA-F5-6814-01 9 117553176 117553176 T G TNFSF15 Missense_Mutation p.Q104H 0.10 deleterious(0.01) probably_damaging(0.934) TCGA-F5-6814-01 9 117666203 117666203 G T TNFSF8 3'UTR 0.25 TCGA-F5-6814-01 9 117808744 117808744 G T TNC Silent p.L1690L 0.24 TCGA-F5-6814-01 9 117810694 117810694 G T TNC Missense_Mutation p.S1566Y 0.32 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 9 118950361 118950361 C T PAPPA Silent p.F448F 0.37 TCGA-F5-6814-01 9 119033674 119033674 G T PAPPA Nonsense_Mutation p.E978* 0.40 TCGA-F5-6814-01 9 119187861 119187861 G A ASTN2 3'UTR 0.55 TCGA-F5-6814-01 9 119249777 119249777 C A ASTN2 Nonsense_Mutation p.E1069* 0.50 TCGA-F5-6814-01 9 119460119 119460119 G A TRIM32 Missense_Mutation p.R33H 0.27 tolerated(0.13) probably_damaging(0.999) TCGA-F5-6814-01 9 119462929 119462929 T G TRIM32 3'UTR 0.48 TCGA-F5-6814-01 9 120474888 120474888 T G TLR4 Missense_Mutation p.L161R 0.20 tolerated(0.35) possibly_damaging(0.801) TCGA-F5-6814-01 9 120475079 120475079 G T TLR4 Nonsense_Mutation p.E225* 0.29 TCGA-F5-6814-01 9 121971001 121971001 C A BRINP1 Nonsense_Mutation p.E381* 0.32 TCGA-F5-6814-01 9 123156857 123156857 C A CDK5RAP2 Missense_Mutation p.K1837N 0.27 deleterious(0.01) probably_damaging(0.95) TCGA-F5-6814-01 9 123632192 123632192 C T PHF19 Silent p.A132A 0.19 TCGA-F5-6814-01 9 123792701 123792701 C A C5 Missense_Mutation p.K244N 0.13 tolerated(0.38) benign(0.003) TCGA-F5-6814-01 9 123805363 123805363 A C C5 Missense_Mutation p.S114A 0.11 tolerated(0.78) benign(0.003) TCGA-F5-6814-01 9 123850657 123850657 C A CNTRL Nonsense_Mutation p.S18* 0.39 TCGA-F5-6814-01 9 123857240 123857240 A C CNTRL Missense_Mutation p.E141D 0.13 probably_damaging(0.997) TCGA-F5-6814-01 9 123857268 123857268 G A CNTRL Missense_Mutation p.E151K 0.41 possibly_damaging(0.836) TCGA-F5-6814-01 9 123904426 123904426 C A CNTRL Missense_Mutation p.H917N 0.24 benign(0.131) TCGA-F5-6814-01 9 123907648 123907648 G T CNTRL Missense_Mutation p.D1099Y 0.31 possibly_damaging(0.684) TCGA-F5-6814-01 9 123920026 123920026 A G CNTRL Missense_Mutation p.Q1502R 0.12 benign(0.371) TCGA-F5-6814-01 9 124045639 124045639 G A GSN-AS1 RNA 0.35 TCGA-F5-6814-01 9 124103490 124103490 T C STOM Missense_Mutation p.H286R 0.16 tolerated(0.17) benign(0.079) TCGA-F5-6814-01 9 124633011 124633011 T G TTLL11 Missense_Mutation p.K590Q 0.21 tolerated(0.22) benign(0.017) TCGA-F5-6814-01 9 125140200 125140200 A G PTGS1 Silent p.P39P 0.19 TCGA-F5-6814-01 9 125154750 125154750 A G PTGS1 Missense_Mutation p.Y576C 0.09 deleterious(0.03) probably_damaging(0.995) TCGA-F5-6814-01 9 125273366 125273366 G T OR1J2 Nonsense_Mutation p.E96* 0.36 TCGA-F5-6814-01 9 125289240 125289240 G T OR1N1 Missense_Mutation p.F111L 0.15 deleterious(0.05) probably_damaging(0.985) TCGA-F5-6814-01 9 125289270 125289270 G T OR1N1 Missense_Mutation p.F101L 0.39 deleterious(0.02) benign(0.007) TCGA-F5-6814-01 9 125330505 125330505 C A OR1L8 Missense_Mutation p.M84I 0.37 tolerated(0.08) benign(0.001) TCGA-F5-6814-01 9 125377337 125377337 C T OR1Q1 Silent p.F107F 0.25 TCGA-F5-6814-01 9 125377761 125377761 G A OR1Q1 Missense_Mutation p.A249T 0.26 tolerated(0.33) benign(0.046) TCGA-F5-6814-01 9 125423884 125423884 A C OR1L1 5'Flank 0.20 TCGA-F5-6814-01 9 125424343 125424343 G A OR1L1 Missense_Mutation p.A117T 0.47 tolerated(0.11) benign(0.049) TCGA-F5-6814-01 9 125424763 125424763 T C OR1L1 Missense_Mutation p.Y257H 0.10 tolerated(0.32) probably_damaging(0.926) TCGA-F5-6814-01 9 125424850 125424850 C A OR1L1 Missense_Mutation p.P286T 0.29 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 9 125642090 125642090 G T RC3H2 Missense_Mutation p.H386N 0.19 deleterious(0.01) possibly_damaging(0.48) TCGA-F5-6814-01 9 125642984 125642984 T G RC3H2 Missense_Mutation p.Q283H 0.11 deleterious(0) probably_damaging(0.965) TCGA-F5-6814-01 9 125835915 125835915 G T RABGAP1 Missense_Mutation p.D690Y 0.38 tolerated(0.08) probably_damaging(0.999) TCGA-F5-6814-01 9 125898757 125898757 T C STRBP Missense_Mutation p.K512R 0.40 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 9 126133738 126133738 G A CRB2 Missense_Mutation p.D773N 0.29 tolerated(1) possibly_damaging(0.555) TCGA-F5-6814-01 9 12694311 12694311 C A TYRP1 Missense_Mutation p.F105L 0.48 deleterious(0) possibly_damaging(0.799) TCGA-F5-6814-01 9 12695696 12695696 T G TYRP1 Silent p.V189V 0.38 TCGA-F5-6814-01 9 127262453 127262453 G A NR5A1 Silent p.F262F 0.11 TCGA-F5-6814-01 9 127298216 127298216 G T NR6A1 Silent p.I340I 0.38 TCGA-F5-6814-01 9 127620295 127620295 G A RPL35 Missense_Mutation p.R92C 0.36 tolerated(0.06) benign(0.06) TCGA-F5-6814-01 9 127783028 127783028 T G SCAI Missense_Mutation p.K201T 0.15 deleterious(0) possibly_damaging(0.483) TCGA-F5-6814-01 9 127996404 127996404 C A RABEPK 3'Flank 0.40 TCGA-F5-6814-01 9 127999227 127999227 C A HSPA5 Nonsense_Mutation p.E537* 0.34 TCGA-F5-6814-01 9 128099680 128099680 G T GAPVD1 Missense_Mutation p.R923I 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-F5-6814-01 9 128118126 128118126 C T GAPVD1 Missense_Mutation p.L1348F 0.37 tolerated(0.13) benign(0.085) TCGA-F5-6814-01 9 128230361 128230361 T C MAPKAP1 Missense_Mutation p.D412G 0.28 deleterious(0.04) probably_damaging(0.952) TCGA-F5-6814-01 9 129596461 129596461 C T ZBTB43 3'UTR 0.26 TCGA-F5-6814-01 9 129596696 129596696 A G ZBTB43 3'UTR 0.32 TCGA-F5-6814-01 9 129597737 129597737 T G ZBTB43 3'UTR 0.31 TCGA-F5-6814-01 9 129598240 129598240 C A ZBTB43 3'UTR 0.28 TCGA-F5-6814-01 9 129598447 129598447 C T ZBTB43 3'UTR 0.28 TCGA-F5-6814-01 9 129598908 129598908 G A ZBTB43 3'UTR 0.34 TCGA-F5-6814-01 9 129643949 129643949 G T ZBTB34 3'UTR 0.38 TCGA-F5-6814-01 9 129644139 129644139 C A ZBTB34 3'UTR 0.41 TCGA-F5-6814-01 9 129646423 129646423 T C ZBTB34 3'UTR 0.29 TCGA-F5-6814-01 9 129851239 129851239 C T ANGPTL2 Silent p.P487P 0.31 TCGA-F5-6814-01 9 130206479 130206479 C T ZNF79 Missense_Mutation p.A167V 0.42 tolerated(0.3) benign(0) TCGA-F5-6814-01 9 130486488 130486488 A G TTC16 Missense_Mutation p.D321G 0.20 tolerated(0.07) benign(0.029) TCGA-F5-6814-01 9 130488550 130488550 C T TTC16 Missense_Mutation p.T431M 0.24 tolerated(0.41) benign(0.017) TCGA-F5-6814-01 9 130489630 130489630 G A TTC16 Silent p.A550A 0.12 TCGA-F5-6814-01 9 130551776 130551776 G A CDK9 Missense_Mutation p.R358H 0.22 tolerated(0.2) benign(0.238) TCGA-F5-6814-01 9 130579338 130579338 T C ENG Intron 0.31 TCGA-F5-6814-01 9 130829345 130829345 G T NAIF1 Missense_Mutation p.F12L 0.22 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 9 131196496 131196496 C T CERCAM Missense_Mutation p.S440F 0.29 deleterious(0) benign(0.285) TCGA-F5-6814-01 9 131298658 131298658 T G GLE1 Missense_Mutation p.D557E 0.24 tolerated(0.22) benign(0.17) TCGA-F5-6814-01 9 13136717 13136717 A C MPDZ Missense_Mutation p.F1429C 0.10 deleterious(0) possibly_damaging(0.468) TCGA-F5-6814-01 9 13137985 13137985 G T MPDZ Silent p.R1391R 0.27 TCGA-F5-6814-01 9 131392597 131392597 T C SPTAN1 Intron 0.21 TCGA-F5-6814-01 9 131394965 131394965 C T SPTAN1 Silent p.F2376F 0.30 TCGA-F5-6814-01 9 131396095 131396095 G A WDR34 Silent p.S513S 0.22 TCGA-F5-6814-01 9 131397047 131397047 G A WDR34 Missense_Mutation p.P379S 0.32 tolerated(0.05) benign(0.072) TCGA-F5-6814-01 9 131455933 131455933 C T SET Missense_Mutation p.S183L 0.30 tolerated(0.16) benign(0.219) TCGA-F5-6814-01 9 131455947 131455947 A G SET Missense_Mutation p.N188D 0.33 tolerated(0.06) benign(0.248) TCGA-F5-6814-01 9 131504076 131504076 T G ZER1 Intron 0.28 TCGA-F5-6814-01 9 131748868 131748868 T G NUP188 Missense_Mutation p.L703R 0.48 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 131765224 131765224 C T NUP188 Silent p.F1422F 0.49 TCGA-F5-6814-01 9 132590470 132590470 C A C9orf78 Missense_Mutation p.E280D 0.32 tolerated(0.24) benign(0.42) TCGA-F5-6814-01 9 132595826 132595826 G C C9orf78 Intron 0.33 TCGA-F5-6814-01 9 133495750 133495750 G A FUBP3 Missense_Mutation p.E226K 0.35 deleterious(0) benign(0.061) TCGA-F5-6814-01 9 133760161 133760161 G T ABL1 Silent p.S847S 0.30 TCGA-F5-6814-01 9 133911697 133911697 C T LAMC3 Silent p.A318A 0.24 TCGA-F5-6814-01 9 134002982 134002982 G A NUP214 Silent p.S39S 0.08 TCGA-F5-6814-01 9 134006196 134006196 G T NUP214 Missense_Mutation p.Q212H 0.41 unknown(0) TCGA-F5-6814-01 9 134151389 134151389 C T FAM78A Missense_Mutation p.V60M 0.43 deleterious(0.05) probably_damaging(0.998) TCGA-F5-6814-01 9 134165669 134165669 G A PPAPDC3 Silent p.R95R 0.38 TCGA-F5-6814-01 9 134314442 134314442 G A PRRC2B Missense_Mutation p.E155K 0.12 tolerated(0.12) benign(0.19) TCGA-F5-6814-01 9 134342958 134342958 G T PRRC2B Nonsense_Mutation p.E577* 0.55 TCGA-F5-6814-01 9 134350076 134350076 C T PRRC2B Missense_Mutation p.P854S 0.42 tolerated(0.31) benign(0.1) TCGA-F5-6814-01 9 134357826 134357826 G A PRRC2B Silent p.A1684A 0.22 TCGA-F5-6814-01 9 134393861 134393861 C T POMT1 Silent p.D456D 0.40 TCGA-F5-6814-01 9 135172339 135172339 G T SETX Missense_Mutation p.H1962N 0.22 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 9 135172426 135172426 C A SETX Missense_Mutation p.D1933Y 0.48 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 9 135203623 135203623 T C SETX Missense_Mutation p.Q1121R 0.22 tolerated(0.37) benign(0.001) TCGA-F5-6814-01 9 135470118 135470118 G T DDX31 3'UTR 0.43 TCGA-F5-6814-01 9 135602896 135602896 C A AK8 Missense_Mutation p.D383Y 0.31 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 9 135702409 135702409 C T AK8 Missense_Mutation p.E197K 0.11 tolerated(0.07) possibly_damaging(0.833) TCGA-F5-6814-01 9 135739118 135739118 C A AK8 Missense_Mutation p.E89D 0.49 tolerated(0.35) benign(0.007) TCGA-F5-6814-01 9 135759350 135759350 G T C9orf9 Nonsense_Mutation p.E6* 0.48 TCGA-F5-6814-01 9 135765256 135765256 G A C9orf9 Intron 0.09 TCGA-F5-6814-01 9 135796818 135796818 C A TSC1 Missense_Mutation p.M223I 0.12 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 9 135798742 135798742 C A TSC1 Missense_Mutation p.K167N 0.19 deleterious(0.01) possibly_damaging(0.509) TCGA-F5-6814-01 9 136259427 136259427 G A C9orf96 Missense_Mutation p.R198H 0.18 tolerated(0.44) benign(0) TCGA-F5-6814-01 9 136268830 136268830 T G C9orf96 Missense_Mutation p.I494S 0.28 tolerated(0.4) benign(0.027) TCGA-F5-6814-01 9 136276182 136276182 C A REXO4 Nonsense_Mutation p.E308* 0.13 TCGA-F5-6814-01 9 136337266 136337266 G T SLC2A6 Missense_Mutation p.F467L 0.47 tolerated(1) benign(0.192) TCGA-F5-6814-01 9 136804238 136804238 C T VAV2 Missense_Mutation p.R103Q 0.32 tolerated(0.38) possibly_damaging(0.866) TCGA-F5-6814-01 9 136913345 136913345 C T BRD3 Missense_Mutation p.D316N 0.30 tolerated(1) probably_damaging(0.981) TCGA-F5-6814-01 9 137020841 137020841 G T WDR5 Missense_Mutation p.K256N 0.11 tolerated(0.38) possibly_damaging(0.715) TCGA-F5-6814-01 9 137623460 137623460 C T COL5A1 Missense_Mutation p.S428L 0.25 probably_damaging(0.955) TCGA-F5-6814-01 9 137690305 137690305 A C COL5A1 Missense_Mutation p.T984P 0.20 unknown(0) TCGA-F5-6814-01 9 137709677 137709677 G T COL5A1 Missense_Mutation p.K1410N 0.31 unknown(0) TCGA-F5-6814-01 9 138380565 138380565 C T PPP1R26 3'UTR 0.27 TCGA-F5-6814-01 9 138416691 138416691 A C LCN1 Missense_Mutation p.N140T 0.31 tolerated(0.58) benign(0.015) TCGA-F5-6814-01 9 138516341 138516341 C T GLT6D1 Missense_Mutation p.D145N 0.47 tolerated(0.06) benign(0.363) TCGA-F5-6814-01 9 138585450 138585450 G A SOHLH1 Missense_Mutation p.A386V 0.25 deleterious(0.02) possibly_damaging(0.866) TCGA-F5-6814-01 9 138585682 138585682 C T SOHLH1 Intron 0.22 TCGA-F5-6814-01 9 138714328 138714328 C T CAMSAP1 Missense_Mutation p.D727N 0.25 tolerated(0.27) benign(0.048) TCGA-F5-6814-01 9 138825342 138825342 C A UBAC1 Missense_Mutation p.E374D 0.33 tolerated(0.26) possibly_damaging(0.786) TCGA-F5-6814-01 9 139279201 139279201 A C SNAPC4 Nonsense_Mutation p.L464* 0.29 TCGA-F5-6814-01 9 139370234 139370234 C T SEC16A Missense_Mutation p.E612K 0.13 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 139636391 139636391 C - LCN10 Frame_Shift_Del p.A67Rfs*4 0.12 TCGA-F5-6814-01 9 139651558 139651558 C T LCN8 Silent p.P29P 0.30 TCGA-F5-6814-01 9 139686710 139686710 C T TMEM141 Silent p.G71G 0.28 TCGA-F5-6814-01 9 139702657 139702657 C T RABL6 Silent p.S3S 0.42 TCGA-F5-6814-01 9 139751457 139751457 C T MAMDC4 Missense_Mutation p.L646F 0.23 deleterious(0) possibly_damaging(0.885) TCGA-F5-6814-01 9 139839739 139839739 C T C8G 5'UTR 0.50 TCGA-F5-6814-01 9 139848623 139848623 C T LCN12 Missense_Mutation p.P156S 0.10 tolerated(0.21) benign(0.288) TCGA-F5-6814-01 9 139945783 139945783 T C ENTPD2 Silent p.A142A 0.33 TCGA-F5-6814-01 9 140051346 140051346 G T GRIN1 Missense_Mutation p.K296N 0.11 tolerated(0.29) possibly_damaging(0.574) TCGA-F5-6814-01 9 140120072 140120072 C T C9orf169 5'UTR 0.21 TCGA-F5-6814-01 9 140332465 140332465 C A ENTPD8 Missense_Mutation p.E66D 0.34 deleterious(0) benign(0.364) TCGA-F5-6814-01 9 140343902 140343902 G A NSMF Missense_Mutation p.R513C 0.54 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 9 140389550 140389550 G A PNPLA7 Missense_Mutation p.R688W 0.27 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 140437169 140437169 G T PNPLA7 Silent p.V197V 0.37 TCGA-F5-6814-01 9 140444657 140444657 A C PNPLA7 5'UTR 0.09 TCGA-F5-6814-01 9 140449959 140449959 G A DPH7 Missense_Mutation p.T364M 0.17 tolerated(0.12) benign(0.042) TCGA-F5-6814-01 9 140728837 140728837 G T EHMT1 Missense_Mutation p.G1193W 0.42 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 140997232 140997232 G T CACNA1B Missense_Mutation p.K1764N 0.29 deleterious(0.02) probably_damaging(0.968) TCGA-F5-6814-01 9 141016070 141016070 C T CACNA1B Silent p.F2213F 0.09 TCGA-F5-6814-01 9 14823280 14823280 C A FREM1 Missense_Mutation p.D739Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 9 14841521 14841521 C A FREM1 Missense_Mutation p.G602V 0.34 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 9 14851561 14851561 C A FREM1 Silent p.P291P 0.32 TCGA-F5-6814-01 9 15214205 15214205 T G TTC39B Missense_Mutation p.E138D 0.29 tolerated(0.17) benign(0.318) TCGA-F5-6814-01 9 15479604 15479604 T G PSIP1 Silent p.R180R 0.18 TCGA-F5-6814-01 9 15721868 15721868 A G CCDC171 Missense_Mutation p.N474D 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 9 15848892 15848892 G A CCDC171 Missense_Mutation p.D1139N 0.25 tolerated(0.06) probably_damaging(0.957) TCGA-F5-6814-01 9 15920307 15920307 A C CCDC171 Missense_Mutation p.S1214R 0.18 tolerated(0.12) probably_damaging(0.958) TCGA-F5-6814-01 9 15971841 15971841 G A CCDC171 3'UTR 0.31 TCGA-F5-6814-01 9 17135324 17135324 A G CNTLN Silent p.R87R 0.52 TCGA-F5-6814-01 9 17143374 17143374 G T CNTLN Missense_Mutation p.R150I 0.12 deleterious(0) possibly_damaging(0.888) TCGA-F5-6814-01 9 17166941 17166941 G T CNTLN Intron 0.35 TCGA-F5-6814-01 9 17235782 17235782 G T CNTLN Nonsense_Mutation p.E221* 0.42 TCGA-F5-6814-01 9 17394531 17394531 G A CNTLN Splice_Site p.X694_splice 0.35 TCGA-F5-6814-01 9 17484344 17484344 A G CNTLN Missense_Mutation p.R1303G 0.09 deleterious(0.01) possibly_damaging(0.798) TCGA-F5-6814-01 9 18753387 18753387 G T ADAMTSL1 Nonsense_Mutation p.E700* 0.31 TCGA-F5-6814-01 9 18753463 18753463 G T ADAMTSL1 Missense_Mutation p.R725L 0.43 tolerated(0.06) possibly_damaging(0.597) TCGA-F5-6814-01 9 18795399 18795399 C A ADAMTSL1 Missense_Mutation p.L1228I 0.42 tolerated(1) benign(0.168) TCGA-F5-6814-01 9 18829946 18829946 T C ADAMTSL1 Missense_Mutation p.V1407A 0.13 tolerated(0.27) benign(0.01) TCGA-F5-6814-01 9 18950934 18950934 G A FAM154A Missense_Mutation p.R14W 0.31 deleterious(0) probably_damaging(0.99) TCGA-F5-6814-01 9 19058879 19058879 T C HAUS6 Missense_Mutation p.H629R 0.26 tolerated(0.33) benign(0.009) TCGA-F5-6814-01 9 19078221 19078221 C A HAUS6 Nonsense_Mutation p.E382* 0.23 TCGA-F5-6814-01 9 19116467 19116467 C A PLIN2 Nonsense_Mutation p.E365* 0.25 TCGA-F5-6814-01 9 19305500 19305500 G T DENND4C Missense_Mutation p.D488Y 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 19316492 19316492 A C DENND4C Missense_Mutation p.K522T 0.24 tolerated(0.07) benign(0.272) TCGA-F5-6814-01 9 19328062 19328062 T G DENND4C Missense_Mutation p.F719V 0.33 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 9 19516174 19516174 G T SLC24A2 Missense_Mutation p.L655I 0.30 tolerated(1) benign(0.029) TCGA-F5-6814-01 9 19573449 19573449 T C SLC24A2 Missense_Mutation p.N416S 0.14 tolerated(0.23) benign(0.017) TCGA-F5-6814-01 9 20622242 20622242 A G MLLT3 Splice_Site p.X4_splice 0.42 TCGA-F5-6814-01 9 20770223 20770223 G T FOCAD Nonsense_Mutation p.E298* 0.39 TCGA-F5-6814-01 9 21077635 21077635 C A IFNB1 Missense_Mutation p.L78F 0.15 tolerated(0.16) possibly_damaging(0.499) TCGA-F5-6814-01 9 21142115 21142115 T C IFNW1 5'UTR 0.32 TCGA-F5-6814-01 9 21166073 21166073 A T IFNA21 Missense_Mutation p.I180N 0.10 tolerated(1) benign(0) TCGA-F5-6814-01 9 21206815 21206815 C A IFNA10 Missense_Mutation p.E94D 0.37 tolerated(0.07) benign(0) TCGA-F5-6814-01 9 21227627 21227627 T G IFNA17 Missense_Mutation p.Q182H 0.38 tolerated(0.05) possibly_damaging(0.522) TCGA-F5-6814-01 9 21332889 21332889 G A KLHL9 3'UTR 0.44 TCGA-F5-6814-01 9 21334444 21334444 C T KLHL9 Missense_Mutation p.D139N 0.15 tolerated(0.13) benign(0.021) TCGA-F5-6814-01 9 21334900 21334900 G T KLHL9 5'UTR 0.35 TCGA-F5-6814-01 9 21385036 21385036 G T IFNA2 Missense_Mutation p.A98D 0.39 deleterious(0.01) probably_damaging(0.958) TCGA-F5-6814-01 9 21385169 21385169 T C IFNA2 Missense_Mutation p.K54E 0.24 deleterious(0.01) benign(0.323) TCGA-F5-6814-01 9 21481682 21481682 C A IFNE Missense_Mutation p.K4N 0.13 deleterious(0) possibly_damaging(0.784) TCGA-F5-6814-01 9 21482073 21482073 C A IFNE 5'UTR 0.45 TCGA-F5-6814-01 9 215758 215758 T C C9orf66 5'UTR 0.42 TCGA-F5-6814-01 9 2648223 2648223 G A VLDLR Missense_Mutation p.R613H 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 26907810 26907810 T C PLAA Intron 0.12 TCGA-F5-6814-01 9 26907955 26907955 T G PLAA Missense_Mutation p.K567Q 0.24 tolerated(0.4) benign(0.001) TCGA-F5-6814-01 9 26910421 26910421 T G PLAA Silent p.R524R 0.24 TCGA-F5-6814-01 9 27009042 27009042 C T IFT74 Silent p.V204V 0.41 TCGA-F5-6814-01 9 27109449 27109449 C T TEK 5'UTR 0.37 TCGA-F5-6814-01 9 27158101 27158101 G T TEK Nonsense_Mutation p.E109* 0.17 TCGA-F5-6814-01 9 27197397 27197397 C T TEK Missense_Mutation p.S570L 0.10 tolerated(0.32) benign(0.014) TCGA-F5-6814-01 9 27566888 27566888 A C C9orf72 Missense_Mutation p.S77R 0.12 tolerated(0.21) possibly_damaging(0.744) TCGA-F5-6814-01 9 27949684 27949684 G T LINGO2 Missense_Mutation p.S329Y 0.46 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 27949700 27949700 G A LINGO2 Missense_Mutation p.R324C 0.45 deleterious(0) possibly_damaging(0.774) TCGA-F5-6814-01 9 27949762 27949762 T C LINGO2 Missense_Mutation p.H303R 0.25 tolerated(0.16) benign(0.001) TCGA-F5-6814-01 9 2810367 2810367 T G KIAA0020 Missense_Mutation p.K567T 0.25 tolerated(0.31) benign(0.098) TCGA-F5-6814-01 9 3262958 3262958 G A RFX3 Missense_Mutation p.R528C 0.10 deleterious(0) possibly_damaging(0.773) TCGA-F5-6814-01 9 32629906 32629906 G A TAF1L 3'UTR 0.47 TCGA-F5-6814-01 9 32634780 32634780 T C TAF1L Silent p.G266G 0.08 TCGA-F5-6814-01 9 32634836 32634836 C T TAF1L Missense_Mutation p.E248K 0.25 tolerated(0.15) benign(0.21) TCGA-F5-6814-01 9 32786028 32786028 C A TMEM215 3'UTR 0.43 TCGA-F5-6814-01 9 33386101 33386101 T A AQP7 Missense_Mutation p.T167S 0.26 tolerated(0.95) benign(0.173) TCGA-F5-6814-01 9 33794776 33794776 G T PRSS3 Intron 0.30 TCGA-F5-6814-01 9 34343433 34343433 G A NUDT2 Missense_Mutation p.A147T 0.33 deleterious_low_confidence(0.02) probably_damaging(0.943) TCGA-F5-6814-01 9 34500721 34500721 T G DNAI1 Missense_Mutation p.D301E 0.24 deleterious(0) probably_damaging(0.991) TCGA-F5-6814-01 9 34506660 34506660 C T DNAI1 Missense_Mutation p.L367F 0.50 tolerated(0.56) benign(0.005) TCGA-F5-6814-01 9 34627842 34627842 T C ARID3C Missense_Mutation p.E57G 0.34 tolerated(0.24) benign(0.032) TCGA-F5-6814-01 9 34661621 34661621 C A IL11RA 3'UTR 0.25 TCGA-F5-6814-01 9 34689767 34689767 A C CCL19 3'UTR 0.18 TCGA-F5-6814-01 9 34729316 34729316 C A FAM205A Nonsense_Mutation p.E37* 0.32 TCGA-F5-6814-01 9 34834345 34834345 C T FAM205B RNA 0.28 TCGA-F5-6814-01 9 34835912 34835912 G A FAM205B RNA 0.25 TCGA-F5-6814-01 9 34837077 34837077 G T FAM205B RNA 0.42 TCGA-F5-6814-01 9 35717154 35717154 A G TLN1 Missense_Mutation p.M816T 0.24 tolerated(0.6) possibly_damaging(0.769) TCGA-F5-6814-01 9 35738120 35738120 G A GBA2 Missense_Mutation p.R743W 0.24 deleterious(0.01) possibly_damaging(0.67) TCGA-F5-6814-01 9 35808080 35808080 T G SPAG8 3'UTR 0.43 TCGA-F5-6814-01 9 35835121 35835121 G A TMEM8B 5'UTR 0.39 TCGA-F5-6814-01 9 36109967 36109967 C A RECK Silent p.S593S 0.10 TCGA-F5-6814-01 9 36677186 36677186 A G MELK Missense_Mutation p.D603G 0.08 deleterious(0.04) probably_damaging(0.977) TCGA-F5-6814-01 9 36966653 36966653 G A PAX5 Missense_Mutation p.R225W 0.35 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 9 37441320 37441320 G A ZBTB5 Missense_Mutation p.S410L 0.39 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-F5-6814-01 9 37486509 37486509 C A POLR1E Intron 0.17 TCGA-F5-6814-01 9 37522975 37522975 C A FBXO10 Splice_Site p.X593_splice 0.36 TCGA-F5-6814-01 9 37744891 37744891 G T FRMPD1 Missense_Mutation p.E954D 0.15 tolerated(0.08) benign(0.055) TCGA-F5-6814-01 9 37745139 37745139 C A FRMPD1 Missense_Mutation p.S1037Y 0.33 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-F5-6814-01 9 37745376 37745376 T G FRMPD1 Missense_Mutation p.V1116G 0.45 deleterious_low_confidence(0.04) benign(0.01) TCGA-F5-6814-01 9 37745663 37745663 C A FRMPD1 Missense_Mutation p.L1212I 0.33 tolerated_low_confidence(0.27) benign(0.021) TCGA-F5-6814-01 9 37887798 37887798 G A SLC25A51 Silent p.F250F 0.26 TCGA-F5-6814-01 9 37888109 37888109 C A SLC25A51 Missense_Mutation p.D147Y 0.11 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 9 38395985 38395985 G T ALDH1B1 Silent p.V80V 0.39 TCGA-F5-6814-01 9 38398289 38398289 G T ALDH1B1 3'UTR 0.38 TCGA-F5-6814-01 9 3856007 3856007 A G GLIS3 Splice_Site p.X825_splice 0.47 TCGA-F5-6814-01 9 38577922 38577922 G A ANKRD18A Missense_Mutation p.S824L 0.46 tolerated(0.21) possibly_damaging(0.885) TCGA-F5-6814-01 9 38596031 38596031 T G ANKRD18A Missense_Mutation p.I436L 0.24 tolerated(0.52) benign(0.019) TCGA-F5-6814-01 9 38615631 38615631 C A ANKRD18A Missense_Mutation p.R152I 0.09 deleterious(0) benign(0.151) TCGA-F5-6814-01 9 39085756 39085756 G T CNTNAP3 Missense_Mutation p.S1140Y 0.12 deleterious(0) probably_damaging(0.934) TCGA-F5-6814-01 9 39085947 39085947 G T CNTNAP3 Intron 0.41 TCGA-F5-6814-01 9 39117956 39117956 C A CNTNAP3 Intron 0.39 TCGA-F5-6814-01 9 39171462 39171462 G A CNTNAP3 Nonsense_Mutation p.R413* 0.44 TCGA-F5-6814-01 9 39178262 39178262 A C CNTNAP3 Missense_Mutation p.F212V 0.32 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 9 3932372 3932372 T G GLIS3 Missense_Mutation p.Q657H 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-F5-6814-01 9 396906 396906 T G DOCK8 Missense_Mutation p.I1031S 0.09 deleterious(0) benign(0.342) TCGA-F5-6814-01 9 40705585 40705585 G A SPATA31A3 Missense_Mutation p.S1081N 0.55 tolerated(0.1) probably_damaging(0.916) TCGA-F5-6814-01 9 40705588 40705588 A C SPATA31A3 Missense_Mutation p.K1082T 0.67 tolerated(0.23) benign(0) TCGA-F5-6814-01 9 40705750 40705750 T G SPATA31A3 Missense_Mutation p.V1136G 0.36 tolerated(0.18) benign(0.001) TCGA-F5-6814-01 9 40772402 40772402 C A ZNF658 Missense_Mutation p.R958I 0.11 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 9 40773277 40773277 A C ZNF658 Silent p.S666S 0.07 TCGA-F5-6814-01 9 40774223 40774223 T G ZNF658 Missense_Mutation p.K351T 0.08 deleterious(0.02) benign(0.006) TCGA-F5-6814-01 9 40784131 40784131 C A ZNF658 Nonsense_Mutation p.E72* 0.13 TCGA-F5-6814-01 9 40784559 40784559 C A ZNF658 Missense_Mutation p.E20D 0.13 tolerated(0.26) benign(0.008) TCGA-F5-6814-01 9 414791 414791 A G DOCK8 Silent p.K1180K 0.16 TCGA-F5-6814-01 9 43915828 43915828 C T CNTNAP3B Missense_Mutation p.R1226C 0.28 tolerated(0.05) benign(0.144) TCGA-F5-6814-01 9 4585420 4585420 C A SLC1A1 Silent p.V479V 0.44 TCGA-F5-6814-01 9 464237 464237 C T DOCK8 3'UTR 0.34 TCGA-F5-6814-01 9 4664043 4664043 C A PPAPDC2 3'UTR 0.21 TCGA-F5-6814-01 9 4849482 4849482 G A RCL1 Silent p.A301A 0.25 TCGA-F5-6814-01 9 5021980 5021980 G T JAK2 5'UTR 0.47 TCGA-F5-6814-01 9 5066705 5066705 G T JAK2 Missense_Mutation p.K414N 0.49 deleterious(0.02) benign(0.312) TCGA-F5-6814-01 9 5069102 5069102 G T JAK2 Missense_Mutation p.K469N 0.28 tolerated(0.11) benign(0.274) TCGA-F5-6814-01 9 5231569 5231569 C T INSL4 Silent p.L16L 0.52 TCGA-F5-6814-01 9 5231604 5231604 G A INSL4 Silent p.E27E 0.49 TCGA-F5-6814-01 9 5231641 5231641 C T INSL4 Silent p.L40L 0.21 TCGA-F5-6814-01 9 5339734 5339734 A G RLN1 Missense_Mutation p.F5L 0.08 tolerated(0.08) benign(0.003) TCGA-F5-6814-01 9 5774356 5774356 C T KIAA1432 3'UTR 0.31 TCGA-F5-6814-01 9 5811194 5811194 C T ERMP1 Missense_Mutation p.R415H 0.47 tolerated(0.06) benign(0.223) TCGA-F5-6814-01 9 5897631 5897631 G A MLANA Missense_Mutation p.R51Q 0.31 deleterious(0.04) benign(0.048) TCGA-F5-6814-01 9 5922155 5922155 G T KIAA2026 Missense_Mutation p.L1281I 0.55 deleterious(0.01) probably_damaging(0.978) TCGA-F5-6814-01 9 5922432 5922432 C T KIAA2026 Silent p.S1188S 0.44 TCGA-F5-6814-01 9 5929144 5929144 G A KIAA2026 Missense_Mutation p.R800W 0.45 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 5968511 5968511 G A KIAA2026 Missense_Mutation p.R574C 0.34 tolerated(0.07) possibly_damaging(0.533) TCGA-F5-6814-01 9 5969259 5969259 G T KIAA2026 Silent p.V324V 0.30 TCGA-F5-6814-01 9 6013269 6013269 G T RANBP6 Missense_Mutation p.S780Y 0.20 deleterious(0) probably_damaging(0.984) TCGA-F5-6814-01 9 6013352 6013352 C A RANBP6 Missense_Mutation p.Q752H 0.49 tolerated(0.13) benign(0.008) TCGA-F5-6814-01 9 6013784 6013784 C A RANBP6 Missense_Mutation p.Q608H 0.52 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 9 6013909 6013909 C T RANBP6 Missense_Mutation p.E567K 0.42 deleterious(0) benign(0.334) TCGA-F5-6814-01 9 6014460 6014460 C T RANBP6 Missense_Mutation p.R383Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 9 6014947 6014947 C A RANBP6 Missense_Mutation p.D221Y 0.42 tolerated(0.23) benign(0.041) TCGA-F5-6814-01 9 6588414 6588414 G A GLDC Missense_Mutation p.S565L 0.10 deleterious(0.02) benign(0.004) TCGA-F5-6814-01 9 67938612 67938612 A G ANKRD20A1 Silent p.Q249Q 0.39 TCGA-F5-6814-01 9 69423666 69423666 A G ANKRD20A4 Silent p.K654K 0.11 TCGA-F5-6814-01 9 70177792 70177792 C T FOXD4L5 Nonsense_Mutation p.W64* 0.13 TCGA-F5-6814-01 9 70484244 70484244 T G CBWD5 Intron 0.16 TCGA-F5-6814-01 9 70490095 70490095 A G CBWD5 5'UTR 0.10 TCGA-F5-6814-01 9 70919722 70919722 C A FOXD4L3 3'UTR 0.19 TCGA-F5-6814-01 9 71155540 71155540 C T TMEM252 Missense_Mutation p.R64H 0.29 tolerated(0.64) benign(0.037) TCGA-F5-6814-01 9 71840966 71840966 C A TJP2 Missense_Mutation p.S393Y 0.37 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 71853627 71853627 A C TJP2 Missense_Mutation p.K790N 0.09 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 9 72003196 72003196 G T FAM189A2 Missense_Mutation p.D327Y 0.35 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 72046239 72046239 G A APBA1 3'UTR 0.22 TCGA-F5-6814-01 9 72459494 72459494 A C C9orf135 Missense_Mutation p.K72Q 0.31 tolerated(0.1) benign(0.372) TCGA-F5-6814-01 9 72521106 72521106 G T C9orf135 3'UTR 0.27 TCGA-F5-6814-01 9 72723294 72723294 T C MAMDC2 Missense_Mutation p.F106L 0.11 tolerated(0.67) benign(0.014) TCGA-F5-6814-01 9 72741211 72741211 C A MAMDC2 Silent p.V260V 0.22 TCGA-F5-6814-01 9 72929698 72929698 C T SMC5 Missense_Mutation p.A540V 0.15 tolerated(0.06) possibly_damaging(0.597) TCGA-F5-6814-01 9 72965072 72965072 C T SMC5 Nonsense_Mutation p.R978* 0.26 TCGA-F5-6814-01 9 72965186 72965186 A G SMC5 Missense_Mutation p.R1016G 0.44 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 73218272 73218272 C A TRPM3 Nonsense_Mutation p.E916* 0.27 TCGA-F5-6814-01 9 73230958 73230958 G T TRPM3 Missense_Mutation p.L786I 0.13 deleterious(0.01) benign(0.093) TCGA-F5-6814-01 9 73442783 73442783 G T TRPM3 Nonsense_Mutation p.S318* 0.32 TCGA-F5-6814-01 9 74974368 74974368 T G ZFAND5 Missense_Mutation p.K111N 0.27 tolerated(0.54) benign(0.001) TCGA-F5-6814-01 9 75404119 75404119 C A TMC1 Missense_Mutation p.F370L 0.25 tolerated(0.09) benign(0.037) TCGA-F5-6814-01 9 75516043 75516043 T G ALDH1A1 3'UTR 0.49 TCGA-F5-6814-01 9 75775765 75775765 G T ANXA1 Missense_Mutation p.R144I 0.12 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 9 75778399 75778399 G A ANXA1 Missense_Mutation p.R188Q 0.29 deleterious(0) probably_damaging(0.986) TCGA-F5-6814-01 9 77362823 77362823 T G TRPM6 Missense_Mutation p.S1689R 0.41 deleterious(0.03) benign(0.006) TCGA-F5-6814-01 9 77598621 77598621 A G C9orf41 3'UTR 0.48 TCGA-F5-6814-01 9 78973557 78973557 C T PCSK5 Missense_Mutation p.R1768C 0.30 deleterious(0) possibly_damaging(0.724) TCGA-F5-6814-01 9 79321236 79321236 G T PRUNE2 Missense_Mutation p.S1985Y 0.33 deleterious(0.01) possibly_damaging(0.804) TCGA-F5-6814-01 9 79322653 79322653 G T PRUNE2 Missense_Mutation p.L1513I 0.14 tolerated(0.19) benign(0.338) TCGA-F5-6814-01 9 79323408 79323408 T C PRUNE2 Missense_Mutation p.D1261G 0.12 tolerated(0.13) benign(0.012) TCGA-F5-6814-01 9 79469112 79469112 G A PRUNE2 Missense_Mutation p.R17C 0.38 tolerated(0.12) benign(0.032) TCGA-F5-6814-01 9 79520873 79520873 C A PRUNE2 Nonsense_Mutation p.E3* 0.14 TCGA-F5-6814-01 9 79827912 79827912 T G VPS13A Missense_Mutation p.L195V 0.45 tolerated(0.18) benign(0.021) TCGA-F5-6814-01 9 79890495 79890495 G A VPS13A Missense_Mutation p.R865Q 0.10 tolerated(0.32) benign(0.004) TCGA-F5-6814-01 9 79985828 79985828 G A VPS13A Missense_Mutation p.G2977E 0.25 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 80866887 80866887 C T CEP78 Missense_Mutation p.A379V 0.08 tolerated(0.32) benign(0.266) TCGA-F5-6814-01 9 80879141 80879141 A C CEP78 Missense_Mutation p.N513H 0.11 tolerated(0.06) possibly_damaging(0.549) TCGA-F5-6814-01 9 84530455 84530455 G T SPATA31D5P RNA 0.30 TCGA-F5-6814-01 9 84562780 84562780 G A RP11-383M4.6 Intron 0.33 TCGA-F5-6814-01 9 84607012 84607012 G A SPATA31D1 Missense_Mutation p.E543K 0.22 tolerated(0.08) benign(0.299) TCGA-F5-6814-01 9 84608279 84608279 G T SPATA31D1 Missense_Mutation p.S965I 0.19 tolerated(0.14) benign(0) TCGA-F5-6814-01 9 8484226 8484226 C A PTPRD Missense_Mutation p.K1102N 0.19 tolerated(0.12) possibly_damaging(0.597) TCGA-F5-6814-01 9 8518099 8518099 G A PTPRD Missense_Mutation p.S431L 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6814-01 9 8518176 8518176 G A PTPRD Silent p.S405S 0.19 TCGA-F5-6814-01 9 8518286 8518286 C A PTPRD Nonsense_Mutation p.E369* 0.19 TCGA-F5-6814-01 9 85622385 85622385 C T RASEF Missense_Mutation p.R332Q 0.17 deleterious(0.02) benign(0.241) TCGA-F5-6814-01 9 85863241 85863241 C A FRMD3 Missense_Mutation p.E462D 0.14 tolerated(0.15) benign(0.008) TCGA-F5-6814-01 9 85914033 85914033 C T FRMD3 Missense_Mutation p.R332Q 0.21 deleterious(0) probably_damaging(0.994) TCGA-F5-6814-01 9 86279973 86279973 C A UBQLN1 Missense_Mutation p.A474S 0.17 tolerated(0.26) probably_damaging(0.97) TCGA-F5-6814-01 9 86297934 86297934 A G UBQLN1 Missense_Mutation p.V127A 0.11 tolerated(1) benign(0.001) TCGA-F5-6814-01 9 86399648 86399648 T G GKAP1 Missense_Mutation p.K182Q 0.11 tolerated(0.42) possibly_damaging(0.821) TCGA-F5-6814-01 9 86421324 86421324 G A GKAP1 Nonsense_Mutation p.R37* 0.24 TCGA-F5-6814-01 9 86451785 86451785 G T KIF27 3'UTR 0.23 TCGA-F5-6814-01 9 86452038 86452038 C A KIF27 Nonsense_Mutation p.E1362* 0.49 TCGA-F5-6814-01 9 86518136 86518136 C T KIF27 Missense_Mutation p.E433K 0.36 tolerated(0.95) benign(0) TCGA-F5-6814-01 9 86559766 86559766 G T C9orf64 Missense_Mutation p.L246I 0.44 deleterious(0) probably_damaging(0.982) TCGA-F5-6814-01 9 86588843 86588843 C T HNRNPK Missense_Mutation p.E126K 0.34 tolerated(0.23) benign(0.001) TCGA-F5-6814-01 9 86616399 86616399 A C RMI1 Missense_Mutation p.K166N 0.20 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 86616422 86616422 C A RMI1 Missense_Mutation p.S174Y 0.13 tolerated(0.07) benign(0.369) TCGA-F5-6814-01 9 86616519 86616519 A G RMI1 Silent p.V206V 0.40 TCGA-F5-6814-01 9 86617775 86617775 A C RMI1 Missense_Mutation p.K625T 0.39 deleterious(0) possibly_damaging(0.863) TCGA-F5-6814-01 9 86618914 86618914 T G RMI1 3'UTR 0.45 TCGA-F5-6814-01 9 88200481 88200481 C T AGTPBP1 Missense_Mutation p.R981Q 0.29 tolerated(0.51) probably_damaging(0.954) TCGA-F5-6814-01 9 88628757 88628757 C T NAA35 Silent p.L505L 0.35 TCGA-F5-6814-01 9 88633239 88633239 C T NAA35 Missense_Mutation p.R615W 0.48 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 88836429 88836429 G T C9orf153 3'UTR 0.44 TCGA-F5-6814-01 9 88842846 88842846 C T C9orf153 Missense_Mutation p.V56I 0.33 tolerated(0.76) benign(0.005) TCGA-F5-6814-01 9 88920146 88920146 C A ZCCHC6 Missense_Mutation p.D1283Y 0.07 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 88924148 88924148 A C ZCCHC6 Missense_Mutation p.F1213L 0.11 deleterious(0) probably_damaging(0.939) TCGA-F5-6814-01 9 88940345 88940345 C A ZCCHC6 Nonsense_Mutation p.E565* 0.55 TCGA-F5-6814-01 9 89771556 89771556 G T C9orf170 Missense_Mutation p.K79N 0.24 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-F5-6814-01 9 90497885 90497885 C T SPATA31E1 Missense_Mutation p.P27S 0.43 tolerated_low_confidence(0.49) benign(0) TCGA-F5-6814-01 9 90534047 90534047 G T SPATA31C1 Intron 0.17 TCGA-F5-6814-01 9 90535742 90535742 C T SPATA31C1 RNA 0.44 TCGA-F5-6814-01 9 91083296 91083296 G A SPIN1 Missense_Mutation p.R122Q 0.31 tolerated(1) benign(0.002) TCGA-F5-6814-01 9 91610026 91610026 A C C9orf47 3'UTR 0.16 TCGA-F5-6814-01 9 91616314 91616314 A C S1PR3 Missense_Mutation p.N67H 0.13 deleterious(0.05) probably_damaging(1) TCGA-F5-6814-01 9 91616397 91616397 C A S1PR3 Silent p.V94V 0.22 TCGA-F5-6814-01 9 92002452 92002452 G A SEMA4D Silent p.F393F 0.39 TCGA-F5-6814-01 9 93636981 93636981 A G SYK Missense_Mutation p.D344G 0.34 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 9 93650096 93650096 C A SYK Missense_Mutation p.F549L 0.13 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 9 93650169 93650169 C T SYK Nonsense_Mutation p.R574* 0.38 TCGA-F5-6814-01 9 94171927 94171927 C T NFIL3 Missense_Mutation p.E364K 0.51 tolerated(0.06) benign(0.342) TCGA-F5-6814-01 9 94173087 94173087 A C NFIL3 5'UTR 0.12 TCGA-F5-6814-01 9 95027316 95027316 C T IARS Missense_Mutation p.S532N 0.13 deleterious(0) probably_damaging(0.996) TCGA-F5-6814-01 9 95064019 95064019 G A NOL8 Silent p.L997L 0.34 TCGA-F5-6814-01 9 95077858 95077858 G T NOL8 Missense_Mutation p.S350Y 0.27 deleterious(0.03) possibly_damaging(0.784) TCGA-F5-6814-01 9 95165726 95165726 T G OGN 5'UTR 0.36 TCGA-F5-6814-01 9 95165775 95165775 A C OGN 5'UTR 0.44 TCGA-F5-6814-01 9 95219471 95219471 C G ASPN 3'UTR 0.36 TCGA-F5-6814-01 9 95263022 95263022 T G ECM2 Missense_Mutation p.N640H 0.08 tolerated(0.24) possibly_damaging(0.53) TCGA-F5-6814-01 9 95263328 95263328 C A ECM2 Nonsense_Mutation p.E538* 0.34 TCGA-F5-6814-01 9 95362725 95362725 G T CENPP Intron 0.21 TCGA-F5-6814-01 9 95396733 95396733 A C IPPK Missense_Mutation p.F369V 0.11 deleterious(0.01) probably_damaging(0.984) TCGA-F5-6814-01 9 95403051 95403051 T G IPPK Missense_Mutation p.M193L 0.19 deleterious(0) possibly_damaging(0.77) TCGA-F5-6814-01 9 95599668 95599668 G A ANKRD19P RNA 0.30 TCGA-F5-6814-01 9 95599912 95599912 G A ANKRD19P RNA 0.30 TCGA-F5-6814-01 9 96002045 96002045 G A WNK2 Silent p.E443E 0.44 TCGA-F5-6814-01 9 96024965 96024965 A C WNK2 Missense_Mutation p.Q1125P 0.31 unknown(0) TCGA-F5-6814-01 9 96051073 96051073 C A WNK2 Nonsense_Mutation p.S1383* 0.11 TCGA-F5-6814-01 9 96054859 96054859 G A WNK2 Silent p.P1741P 0.17 TCGA-F5-6814-01 9 96080430 96080430 G T WNK2 3'UTR 0.38 TCGA-F5-6814-01 9 96081447 96081447 G T C9orf129 Silent p.I125I 0.21 TCGA-F5-6814-01 9 96278403 96278403 G A FAM120A Missense_Mutation p.E424K 0.25 tolerated(0.76) benign(0.239) TCGA-F5-6814-01 9 96323408 96323408 T C FAM120A Missense_Mutation p.S942P 0.14 tolerated(0.95) benign(0.012) TCGA-F5-6814-01 9 96326565 96326565 A C FAM120A Missense_Mutation p.K1034Q 0.10 tolerated_low_confidence(0.35) benign(0.098) TCGA-F5-6814-01 9 96326579 96326579 G A FAM120A Silent p.S1038S 0.32 TCGA-F5-6814-01 9 97062648 97062648 C T ZNF169 Missense_Mutation p.R270W 0.42 deleterious(0) possibly_damaging(0.571) TCGA-F5-6814-01 9 98690409 98690409 C A ERCC6L2 Missense_Mutation p.L539I 0.26 deleterious(0.02) possibly_damaging(0.881) TCGA-F5-6814-01 9 98734580 98734580 G A ERCC6L2 3'Flank 0.39 TCGA-F5-6814-01 9 99006656 99006656 G C HSD17B3 Silent p.S209S 0.35 TCGA-F5-6814-01 9 99006657 99006657 G A HSD17B3 Missense_Mutation p.S209F 0.11 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 9 99150314 99150314 T G ZNF367 3'UTR 0.75 TCGA-F5-6814-01 9 99798939 99798939 C T CTSV Missense_Mutation p.E163K 0.40 deleterious(0.04) possibly_damaging(0.767) TCGA-F5-6814-01 X 100077249 100077249 C T CSTF2 Silent p.Y49Y 0.83 TCGA-F5-6814-01 X 100169324 100169324 G T XKRX 3'UTR 0.52 TCGA-F5-6814-01 X 100241869 100241869 G T ARL13A Missense_Mutation p.E155D 0.69 tolerated(0.1) benign(0.327) TCGA-F5-6814-01 X 100245636 100245636 G T ARL13A 3'UTR 0.10 TCGA-F5-6814-01 X 100497325 100497325 A T DRP2 Missense_Mutation p.E280D 0.77 tolerated(0.28) benign(0.032) TCGA-F5-6814-01 X 100541563 100541563 G A TAF7L Missense_Mutation p.P135S 0.71 tolerated(0.54) benign(0.101) TCGA-F5-6814-01 X 100548002 100548002 G T TAF7L Missense_Mutation p.S11Y 0.91 tolerated(1) possibly_damaging(0.556) TCGA-F5-6814-01 X 100603598 100603598 A G TIMM8A Silent p.L19L 0.79 TCGA-F5-6814-01 X 100667763 100667763 G T HNRNPH2 Missense_Mutation p.D263Y 0.14 tolerated(0.13) possibly_damaging(0.774) TCGA-F5-6814-01 X 100668853 100668853 G A HNRNPH2 3'UTR 0.39 TCGA-F5-6814-01 X 100809368 100809368 G T ARMCX1 3'UTR 0.81 TCGA-F5-6814-01 X 100880984 100880984 G T ARMCX3 Nonsense_Mutation p.E339* 0.71 TCGA-F5-6814-01 X 100882401 100882401 G T ARMCX3 3'UTR 0.17 TCGA-F5-6814-01 X 100911280 100911280 A C ARMCX2 Missense_Mutation p.I432S 0.47 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 101092604 101092604 C A NXF5 Missense_Mutation p.K314N 0.12 deleterious(0.01) benign(0.147) TCGA-F5-6814-01 X 101096041 101096041 G A NXF5 Nonsense_Mutation p.R143* 0.16 TCGA-F5-6814-01 X 101139622 101139622 G A ZMAT1 Silent p.V259V 0.25 TCGA-F5-6814-01 X 101159250 101159250 G T ZMAT1 Missense_Mutation p.Q59K 0.11 tolerated(0.96) benign(0.005) TCGA-F5-6814-01 X 101382278 101382278 A C TCEAL2 Missense_Mutation p.D159A 0.16 deleterious(0.03) possibly_damaging(0.822) TCGA-F5-6814-01 X 101572141 101572141 G A NXF2 Intron 0.41 TCGA-F5-6814-01 X 101817737 101817737 A T NXF4 RNA 0.83 TCGA-F5-6814-01 X 10188892 10188892 C T CLCN4 Missense_Mutation p.R723W 0.13 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 X 101909641 101909641 A C GPRASP1 Missense_Mutation p.D267A 0.42 deleterious(0) benign(0.146) TCGA-F5-6814-01 X 101910767 101910767 G T GPRASP1 Missense_Mutation p.M642I 0.81 tolerated(1) benign(0) TCGA-F5-6814-01 X 101912217 101912217 C T GPRASP1 Nonsense_Mutation p.R1126* 0.13 TCGA-F5-6814-01 X 101913543 101913544 - A GPRASP1 3'UTR 0.42 TCGA-F5-6814-01 X 101971691 101971691 G T GPRASP2 Missense_Mutation p.D632Y 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-F5-6814-01 X 102339334 102339334 G T NXF3 Missense_Mutation p.P96H 0.19 tolerated(0.11) benign(0.301) TCGA-F5-6814-01 X 102632615 102632615 G T NGFRAP1 Missense_Mutation p.D66Y 0.81 deleterious(0) probably_damaging(0.988) TCGA-F5-6814-01 X 102754819 102754819 C T RAB40A 3'UTR 0.43 TCGA-F5-6814-01 X 102755475 102755475 C T RAB40A Silent p.T70T 0.74 TCGA-F5-6814-01 X 102841130 102841130 C T TCEAL4 5'UTR 0.33 TCGA-F5-6814-01 X 102864667 102864667 C A TCEAL3 3'UTR 0.48 TCGA-F5-6814-01 X 102968489 102968489 C A GLRA4 Nonsense_Mutation p.E348* 0.45 TCGA-F5-6814-01 X 103080187 103080187 C A RAB9B Missense_Mutation p.E176D 0.87 tolerated(0.12) benign(0.006) TCGA-F5-6814-01 X 103349102 103349102 G A SLC25A53 Missense_Mutation p.S280F 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 104440309 104440309 A C IL1RAPL2 Missense_Mutation p.N79H 0.80 tolerated(0.05) probably_damaging(0.967) TCGA-F5-6814-01 X 104984617 104984617 G A IL1RAPL2 Silent p.A327A 0.71 TCGA-F5-6814-01 X 105153773 105153773 A C NRK Missense_Mutation p.K715Q 0.47 deleterious_low_confidence(0.03) benign(0.001) TCGA-F5-6814-01 X 105153835 105153835 C A NRK Silent p.I735I 0.78 TCGA-F5-6814-01 X 105199544 105199544 C A NRK Missense_Mutation p.F1568L 0.74 deleterious(0.02) possibly_damaging(0.874) TCGA-F5-6814-01 X 105449613 105449613 T G MUM1L1 Missense_Mutation p.I63S 0.11 deleterious(0) possibly_damaging(0.777) TCGA-F5-6814-01 X 105450173 105450173 A G MUM1L1 Missense_Mutation p.M250V 0.46 tolerated(1) benign(0) TCGA-F5-6814-01 X 105450849 105450849 A C MUM1L1 Missense_Mutation p.D475A 0.21 tolerated(0.05) probably_damaging(1) TCGA-F5-6814-01 X 105452056 105452056 C T MUM1L1 3'UTR 0.85 TCGA-F5-6814-01 X 105882877 105882877 G A CXorf57 Missense_Mutation p.S565N 0.12 tolerated(0.23) benign(0.001) TCGA-F5-6814-01 X 106200209 106200209 C A MORC4 Nonsense_Mutation p.E471* 0.85 TCGA-F5-6814-01 X 106358731 106358731 T G RBM41 Missense_Mutation p.E125A 0.56 deleterious(0.03) benign(0.092) TCGA-F5-6814-01 X 106885635 106885635 C A PRPS1 Missense_Mutation p.P149T 0.15 deleterious(0.01) probably_damaging(0.989) TCGA-F5-6814-01 X 107037604 107037604 G A NCBP2L Missense_Mutation p.E52K 0.83 deleterious(0.02) probably_damaging(0.914) TCGA-F5-6814-01 X 107811998 107811998 G A COL4A5 Missense_Mutation p.G111S 0.22 unknown(0) TCGA-F5-6814-01 X 107936002 107936002 G A COL4A5 Missense_Mutation p.R1518H 0.12 possibly_damaging(0.723) TCGA-F5-6814-01 X 107976068 107976068 A G IRS4 Silent p.A1169A 0.64 TCGA-F5-6814-01 X 107977148 107977148 G T IRS4 Missense_Mutation p.F809L 0.80 deleterious(0) unknown(0) TCGA-F5-6814-01 X 108647691 108647691 C A GUCY2F Missense_Mutation p.R664I 0.26 deleterious(0) possibly_damaging(0.876) TCGA-F5-6814-01 X 108779007 108779007 G A NXT2 5'Flank 0.32 TCGA-F5-6814-01 X 108785910 108785910 G T NXT2 Missense_Mutation p.S196I 0.20 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-F5-6814-01 X 108926385 108926385 T G ACSL4 Missense_Mutation p.N111H 0.76 deleterious(0) possibly_damaging(0.726) TCGA-F5-6814-01 X 109695261 109695261 T G RGAG1 Silent p.T472T 0.16 TCGA-F5-6814-01 X 109695710 109695710 A C RGAG1 Missense_Mutation p.K622T 0.15 tolerated(0.07) probably_damaging(0.929) TCGA-F5-6814-01 X 109697682 109697682 A C RGAG1 Silent p.S1279S 0.74 TCGA-F5-6814-01 X 110035319 110035319 T G CHRDL1 Missense_Mutation p.K31Q 0.47 tolerated(0.16) benign(0.005) TCGA-F5-6814-01 X 110644527 110644527 G T DCX Missense_Mutation p.F213L 0.76 tolerated(0.65) benign(0.005) TCGA-F5-6814-01 X 111022211 111022211 A G TRPC5 Splice_Site p.X744_splice 0.22 TCGA-F5-6814-01 X 111697945 111697945 C T ZCCHC16 5'UTR 0.34 TCGA-F5-6814-01 X 111914492 111914492 A G LHFPL1 Missense_Mutation p.S43P 0.19 tolerated(0.17) benign(0.25) TCGA-F5-6814-01 X 112025824 112025824 C A AMOT Missense_Mutation p.Q728H 0.39 unknown(0) TCGA-F5-6814-01 X 11318735 11318735 G A AMELX 3'UTR 0.11 TCGA-F5-6814-01 X 113965860 113965860 A C HTR2C Missense_Mutation p.I65L 0.50 tolerated(0.16) benign(0.013) TCGA-F5-6814-01 X 114245256 114245256 C T IL13RA2 Silent p.E219E 0.25 TCGA-F5-6814-01 X 114426036 114426036 G A RBMXL3 Missense_Mutation p.D678N 0.83 deleterious_low_confidence(0.04) possibly_damaging(0.555) TCGA-F5-6814-01 X 114874755 114874755 C T PLS3 Silent p.I309I 0.80 TCGA-F5-6814-01 X 114953278 114953278 G A RP1-241P17.4 Missense_Mutation p.T91M 0.38 deleterious(0.03) benign(0.271) TCGA-F5-6814-01 X 115303891 115303891 T A AGTR2 Missense_Mutation p.F120I 0.16 tolerated(0.13) benign(0.09) TCGA-F5-6814-01 X 115304055 115304055 C A AGTR2 Silent p.S174S 0.12 TCGA-F5-6814-01 X 115305502 115305502 T G AGTR2 3'UTR 0.09 TCGA-F5-6814-01 X 117570668 117570668 T G WDR44 Missense_Mutation p.Y619D 0.79 deleterious(0) benign(0.141) TCGA-F5-6814-01 X 117577623 117577623 C T WDR44 Missense_Mutation p.R829C 0.48 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 117695437 117695437 C T DOCK11 Missense_Mutation p.S217L 0.48 deleterious(0.05) possibly_damaging(0.53) TCGA-F5-6814-01 X 117700081 117700081 G T DOCK11 Missense_Mutation p.K269N 0.10 deleterious(0.04) possibly_damaging(0.771) TCGA-F5-6814-01 X 117722211 117722211 T G DOCK11 Missense_Mutation p.F636C 0.10 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 X 117752553 117752553 G A DOCK11 Silent p.K1111K 0.13 TCGA-F5-6814-01 X 117762127 117762127 T G DOCK11 Silent p.A1222A 0.29 TCGA-F5-6814-01 X 11777976 11777976 T G MSL3 Missense_Mutation p.F56C 0.76 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 X 117809913 117809913 T C DOCK11 Silent p.V1738V 0.80 TCGA-F5-6814-01 X 118217011 118217011 C T KIAA1210 Missense_Mutation p.A1641T 0.17 deleterious(0.01) possibly_damaging(0.82) TCGA-F5-6814-01 X 118221675 118221675 C T KIAA1210 Missense_Mutation p.R1173Q 0.18 tolerated(0.22) benign(0.042) TCGA-F5-6814-01 X 118786968 118786968 A C SEPT6 Missense_Mutation p.F126C 0.82 deleterious(0.01) possibly_damaging(0.859) TCGA-F5-6814-01 X 118893951 118893951 G A SOWAHD 3'UTR 0.69 TCGA-F5-6814-01 X 118977207 118977207 G T UPF3B Missense_Mutation p.S176Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 X 119388581 119388581 C T ZBTB33 Silent p.I437I 0.72 TCGA-F5-6814-01 X 119388958 119388958 A G ZBTB33 Missense_Mutation p.Q563R 0.15 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 X 119419526 119419526 G T TMEM255A Missense_Mutation p.S150Y 0.17 tolerated(0.11) benign(0.206) TCGA-F5-6814-01 X 119589309 119589309 C T LAMP2 Silent p.A100A 0.47 TCGA-F5-6814-01 X 119739411 119739411 G A MCTS1 Missense_Mutation p.R55Q 0.40 deleterious(0.01) benign(0.004) TCGA-F5-6814-01 X 122598815 122598815 C T GRIA3 Nonsense_Mutation p.R726* 0.24 TCGA-F5-6814-01 X 122753275 122753275 C T THOC2 Missense_Mutation p.E1430K 0.19 tolerated(0.19) benign(0.004) TCGA-F5-6814-01 X 123020225 123020225 G A XIAP Missense_Mutation p.R238Q 0.47 tolerated(0.67) benign(0) TCGA-F5-6814-01 X 123020285 123020285 G T XIAP Missense_Mutation p.R258I 0.71 deleterious(0.03) benign(0.002) TCGA-F5-6814-01 X 123514982 123514982 A C TENM1 Missense_Mutation p.F2535V 0.94 tolerated(0.28) benign(0.024) TCGA-F5-6814-01 X 123525978 123525978 T C TENM1 Missense_Mutation p.E1871G 0.19 tolerated(0.15) benign(0.002) TCGA-F5-6814-01 X 123554522 123554522 A C TENM1 Missense_Mutation p.Y1541D 0.20 deleterious(0) probably_damaging(0.995) TCGA-F5-6814-01 X 123699286 123699286 G A TENM1 Silent p.G734G 0.17 TCGA-F5-6814-01 X 124097526 124097526 G T TENM1 Missense_Mutation p.S26Y 0.25 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-F5-6814-01 X 125298648 125298648 G T DCAF12L2 Nonsense_Mutation p.Y420* 0.68 TCGA-F5-6814-01 X 125299567 125299567 C T DCAF12L2 Missense_Mutation p.G114D 0.70 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 127186273 127186273 T G ACTRT1 5'UTR 0.84 TCGA-F5-6814-01 X 127186372 127186372 A T ACTRT1 5'UTR 0.37 TCGA-F5-6814-01 X 128630822 128630822 T C SMARCA1 Missense_Mutation p.M511V 0.82 deleterious(0) benign(0.317) TCGA-F5-6814-01 X 128652422 128652422 T G SMARCA1 Missense_Mutation p.K59N 0.13 tolerated(0.2) probably_damaging(0.937) TCGA-F5-6814-01 X 128709144 128709144 C T OCRL Missense_Mutation p.R544W 0.73 deleterious(0) probably_damaging(0.915) TCGA-F5-6814-01 X 129054494 129054494 C T UTP14A Missense_Mutation p.R272W 0.78 tolerated(0.31) benign(0.008) TCGA-F5-6814-01 X 12906274 12906274 C T TLR7 Missense_Mutation p.R883C 0.16 deleterious(0.01) possibly_damaging(0.841) TCGA-F5-6814-01 X 12906862 12906862 C T TLR7 3'UTR 0.64 TCGA-F5-6814-01 X 129149535 129149535 G T BCORL1 Missense_Mutation p.Q929H 0.19 possibly_damaging(0.854) TCGA-F5-6814-01 X 129150017 129150017 G A BCORL1 Missense_Mutation p.R1090Q 0.45 benign(0.005) TCGA-F5-6814-01 X 129274540 129274540 T G AIFM1 Missense_Mutation p.Q250P 0.68 deleterious(0.04) benign(0.003) TCGA-F5-6814-01 X 129370217 129370217 G T ZNF280C Missense_Mutation p.L248I 0.71 deleterious(0.05) possibly_damaging(0.613) TCGA-F5-6814-01 X 12937901 12937901 T G TLR8 Missense_Mutation p.L248V 0.38 deleterious(0.01) possibly_damaging(0.725) TCGA-F5-6814-01 X 129498635 129498635 G A SLC25A14 Missense_Mutation p.V210I 0.46 tolerated(0.48) benign(0.399) TCGA-F5-6814-01 X 130416698 130416698 C A IGSF1 Missense_Mutation p.K322N 0.79 deleterious(0.01) benign(0.419) TCGA-F5-6814-01 X 13058918 13058918 C A FAM9C Missense_Mutation p.K96N 0.06 tolerated(0.14) probably_damaging(0.937) TCGA-F5-6814-01 X 131234666 131234666 C A FRMD7 Nonsense_Mutation p.E46* 0.92 TCGA-F5-6814-01 X 131234737 131234737 G T FRMD7 Nonsense_Mutation p.S22* 0.89 TCGA-F5-6814-01 X 1317422 1317422 G A CRLF2 Missense_Mutation p.R215W 0.20 deleterious(0) probably_damaging(0.985) TCGA-F5-6814-01 X 132160765 132160765 T G USP26 Missense_Mutation p.K495T 0.19 tolerated(0.19) benign(0.304) TCGA-F5-6814-01 X 132351468 132351468 C T TFDP3 Missense_Mutation p.D274N 0.07 deleterious(0.02) benign(0) TCGA-F5-6814-01 X 13337101 13337101 G A ATXN3L Missense_Mutation p.S318L 0.45 tolerated_low_confidence(0.09) benign(0.014) TCGA-F5-6814-01 X 13337603 13337603 A C ATXN3L Missense_Mutation p.F151V 0.26 deleterious(0) probably_damaging(0.942) TCGA-F5-6814-01 X 133379081 133379081 G T CCDC160 Missense_Mutation p.R84I 0.82 tolerated(1) benign(0) TCGA-F5-6814-01 X 134030869 134030869 A T MOSPD1 Missense_Mutation p.F142L 0.80 tolerated(0.66) benign(0.004) TCGA-F5-6814-01 X 134125598 134125598 A C SMIM10 3'UTR 0.23 TCGA-F5-6814-01 X 134125999 134125999 A C SMIM10 3'UTR 0.76 TCGA-F5-6814-01 X 134292196 134292196 A C CT55 Nonsense_Mutation p.Y155* 0.17 TCGA-F5-6814-01 X 134427963 134427963 T G ZNF75D Missense_Mutation p.K35T 0.40 deleterious(0) probably_damaging(0.981) TCGA-F5-6814-01 X 134494494 134494494 T G ZNF449 Silent p.P350P 0.19 TCGA-F5-6814-01 X 134948026 134948026 C A CT45A5 Missense_Mutation p.S100I 0.78 tolerated(0.37) possibly_damaging(0.837) TCGA-F5-6814-01 X 134988639 134988639 T C SAGE1 Missense_Mutation p.L222S 0.11 deleterious(0.04) possibly_damaging(0.498) TCGA-F5-6814-01 X 134993422 134993422 T C SAGE1 Missense_Mutation p.S693P 0.18 tolerated(0.08) probably_damaging(0.931) TCGA-F5-6814-01 X 134994038 134994038 C T SAGE1 Missense_Mutation p.S816F 0.13 deleterious(0.01) probably_damaging(0.996) TCGA-F5-6814-01 X 135106524 135106524 C T SLC9A6 Nonsense_Mutation p.R500* 0.78 TCGA-F5-6814-01 X 135310865 135310865 T G MAP7D3 Missense_Mutation p.K601N 0.49 deleterious(0) possibly_damaging(0.822) TCGA-F5-6814-01 X 135312618 135312618 T G MAP7D3 Missense_Mutation p.K559T 0.12 tolerated(0.11) benign(0.039) TCGA-F5-6814-01 X 135323389 135323389 A G MAP7D3 Silent p.L155L 0.49 TCGA-F5-6814-01 X 135390979 135390979 C A GPR112 Missense_Mutation p.L15I 0.29 tolerated(0.07) benign(0.009) TCGA-F5-6814-01 X 135429713 135429713 C A GPR112 Missense_Mutation p.S1283Y 0.77 tolerated(0.46) benign(0.001) TCGA-F5-6814-01 X 135593666 135593666 C A HTATSF1 Missense_Mutation p.L588I 0.22 deleterious_low_confidence(0.02) benign(0.253) TCGA-F5-6814-01 X 135862934 135862934 T G ARHGEF6 Missense_Mutation p.K36N 0.49 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-F5-6814-01 X 135956485 135956485 C T RBMX Missense_Mutation p.R331Q 0.18 tolerated(0.14) benign(0.007) TCGA-F5-6814-01 X 136113293 136113293 G T GPR101 Missense_Mutation p.L181I 0.71 tolerated(0.15) benign(0.22) TCGA-F5-6814-01 X 13626556 13626556 C T EGFL6 Missense_Mutation p.R257W 0.11 deleterious(0) possibly_damaging(0.764) TCGA-F5-6814-01 X 136649783 136649783 G A ZIC3 Silent p.A311A 0.42 TCGA-F5-6814-01 X 13681216 13681216 T C TCEANC Silent p.L227L 0.29 TCGA-F5-6814-01 X 13756994 13756994 C A OFD1 Silent p.L114L 0.34 TCGA-F5-6814-01 X 13767558 13767558 G T OFD1 Nonsense_Mutation p.E281* 0.08 TCGA-F5-6814-01 X 137717769 137717769 A C FGF13 Missense_Mutation p.N160K 0.14 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 X 138623325 138623325 T C F9 Missense_Mutation p.F123S 0.39 deleterious(0) possibly_damaging(0.896) TCGA-F5-6814-01 X 138697171 138697171 C T MCF2 Missense_Mutation p.R471Q 0.76 tolerated(1) probably_damaging(0.997) TCGA-F5-6814-01 X 138857091 138857091 C T ATP11C Silent p.E661E 0.81 TCGA-F5-6814-01 X 138901537 138901537 C A ATP11C Missense_Mutation p.R69I 0.81 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 138908879 138908879 C A ATP11C Missense_Mutation p.R47I 0.24 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 1401670 1401670 C T CSF2RA Missense_Mutation p.S25L 0.47 tolerated(0.34) benign(0) TCGA-F5-6814-01 X 140335649 140335649 G A SPANXC 3'UTR 0.10 TCGA-F5-6814-01 X 140335762 140335762 C A SPANXC Missense_Mutation p.R61I 0.73 tolerated(0.17) benign(0.022) TCGA-F5-6814-01 X 140786577 140786577 C A SPANXD 5'UTR 0.15 TCGA-F5-6814-01 X 140984686 140984686 C T MAGEC3 Missense_Mutation p.A381V 0.33 tolerated(0.08) benign(0.06) TCGA-F5-6814-01 X 140985201 140985201 C A MAGEC3 Missense_Mutation p.L553I 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6814-01 X 140993490 140993490 G T MAGEC1 Missense_Mutation p.Q100H 0.21 deleterious_low_confidence(0.04) benign(0.216) TCGA-F5-6814-01 X 140994002 140994002 C T MAGEC1 Missense_Mutation p.P271L 0.68 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-F5-6814-01 X 140994107 140994107 C A MAGEC1 Missense_Mutation p.P306H 0.12 deleterious_low_confidence(0) benign(0.002) TCGA-F5-6814-01 X 140994167 140994167 C A MAGEC1 Missense_Mutation p.T326N 0.62 tolerated_low_confidence(0.09) benign(0) TCGA-F5-6814-01 X 140994292 140994292 T G MAGEC1 Missense_Mutation p.F368V 0.09 tolerated_low_confidence(0.19) benign(0.307) TCGA-F5-6814-01 X 141290946 141290946 T C MAGEC2 Silent p.K276K 0.13 TCGA-F5-6814-01 X 142718348 142718348 G T SLITRK4 Missense_Mutation p.L193I 0.08 deleterious(0.01) possibly_damaging(0.506) TCGA-F5-6814-01 X 144904366 144904366 C T SLITRK2 Silent p.A141A 0.89 TCGA-F5-6814-01 X 144904873 144904873 T C SLITRK2 Silent p.R310R 0.54 TCGA-F5-6814-01 X 144905576 144905576 G T SLITRK2 Nonsense_Mutation p.E545* 0.52 TCGA-F5-6814-01 X 144905937 144905937 T C SLITRK2 Missense_Mutation p.F665S 0.14 deleterious(0.01) probably_damaging(0.933) TCGA-F5-6814-01 X 144906213 144906213 A C SLITRK2 Missense_Mutation p.Q757P 0.79 tolerated(0.29) possibly_damaging(0.885) TCGA-F5-6814-01 X 144909085 144909085 G T TMEM257 5'UTR 1.00 TCGA-F5-6814-01 X 14548069 14548069 G T GLRA2 5'UTR 1.00 TCGA-F5-6814-01 X 146342091 146342091 T G MIR509-1 RNA 0.21 TCGA-F5-6814-01 X 147084729 147084729 T C FMR1NB Missense_Mutation p.Y96H 0.77 tolerated(0.57) possibly_damaging(0.607) TCGA-F5-6814-01 X 1475192 1475192 T G IL3RA Missense_Mutation p.F232C 0.13 deleterious(0) probably_damaging(0.968) TCGA-F5-6814-01 X 147743480 147743480 T G AFF2 Missense_Mutation p.Y78D 0.17 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 148037203 148037203 C A AFF2 Missense_Mutation p.S543Y 0.76 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 14882851 14882851 C T FANCB Missense_Mutation p.R261Q 0.32 tolerated(1) benign(0.011) TCGA-F5-6814-01 X 149013947 149013947 C T MAGEA8 Missense_Mutation p.R301C 0.80 deleterious(0.02) possibly_damaging(0.62) TCGA-F5-6814-01 X 149014569 149014569 G T MAGEA8 3'UTR 0.49 TCGA-F5-6814-01 X 14927069 14927069 T C MOSPD2 Missense_Mutation p.V222A 0.21 deleterious(0) possibly_damaging(0.794) TCGA-F5-6814-01 X 149638633 149638633 C T MAMLD1 Missense_Mutation p.S238L 0.80 deleterious(0.04) benign(0.113) TCGA-F5-6814-01 X 149639363 149639363 C A MAMLD1 Silent p.I481I 0.49 TCGA-F5-6814-01 X 1499933 1499933 G A IL3RA Missense_Mutation p.R333K 0.43 tolerated(1) benign(0.014) TCGA-F5-6814-01 X 150156270 150156270 G A HMGB3 Silent p.S162S 0.22 TCGA-F5-6814-01 X 150828303 150828303 C A PASD1 Missense_Mutation p.S279Y 0.87 deleterious(0.03) probably_damaging(0.983) TCGA-F5-6814-01 X 151870740 151870740 T G MAGEA6 3'UTR 0.20 TCGA-F5-6814-01 X 151870791 151870791 G A MAGEA6 3'UTR 0.79 TCGA-F5-6814-01 X 151934686 151934686 C T MAGEA3 3'UTR 0.33 TCGA-F5-6814-01 X 152159655 152159655 G A PNMA5 Missense_Mutation p.S163L 0.48 deleterious(0) possibly_damaging(0.875) TCGA-F5-6814-01 X 152482438 152482438 C A MAGEA1 Missense_Mutation p.K191N 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6814-01 X 152613928 152613928 T G ZNF275 3'UTR 0.33 TCGA-F5-6814-01 X 152614710 152614710 G A ZNF275 3'UTR 0.24 TCGA-F5-6814-01 X 152616288 152616288 C T ZNF275 3'UTR 0.14 TCGA-F5-6814-01 X 152686248 152686248 C T ZFP92 Missense_Mutation p.S138L 0.81 tolerated(0.35) benign(0.003) TCGA-F5-6814-01 X 152728076 152728076 G A HAUS7 Missense_Mutation p.L126F 0.26 deleterious(0) probably_damaging(0.989) TCGA-F5-6814-01 X 152806986 152806986 C A ATP2B3 Missense_Mutation p.F126L 0.76 tolerated(0.11) probably_damaging(0.998) TCGA-F5-6814-01 X 152815571 152815571 C T ATP2B3 Silent p.F550F 0.58 TCGA-F5-6814-01 X 152823606 152823606 G A ATP2B3 Missense_Mutation p.D824N 0.72 deleterious(0.03) probably_damaging(0.931) TCGA-F5-6814-01 X 152835090 152835090 C T ATP2B3 Intron 0.50 TCGA-F5-6814-01 X 152981102 152981102 T G BCAP31 Missense_Mutation p.K146T 0.27 tolerated(0.1) benign(0.431) TCGA-F5-6814-01 X 152991224 152991224 C T ABCD1 Missense_Mutation p.A168V 0.22 tolerated(0.1) benign(0.045) TCGA-F5-6814-01 X 153047005 153047005 A G SRPK3 Missense_Mutation p.Y79C 0.14 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 X 153130151 153130151 C T L1CAM Missense_Mutation p.D1019N 1.00 tolerated(0.48) benign(0.001) TCGA-F5-6814-01 X 153133774 153133774 C A L1CAM Missense_Mutation p.E562D 0.19 tolerated(0.16) benign(0.075) TCGA-F5-6814-01 X 153134394 153134394 C A L1CAM Missense_Mutation p.K427N 0.61 deleterious(0.03) benign(0.119) TCGA-F5-6814-01 X 153175837 153175837 C T ARHGAP4 Silent p.E688E 0.81 TCGA-F5-6814-01 X 153178174 153178174 C A ARHGAP4 Missense_Mutation p.D548Y 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-F5-6814-01 X 153178703 153178703 C A ARHGAP4 Missense_Mutation p.K500N 0.94 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 X 153220706 153220706 G T HCFC1 Missense_Mutation p.F1048L 0.79 tolerated_low_confidence(0.24) probably_damaging(0.958) TCGA-F5-6814-01 X 153222106 153222106 C T HCFC1 Missense_Mutation p.V869I 0.50 tolerated_low_confidence(0.06) probably_damaging(0.949) TCGA-F5-6814-01 X 153697298 153697298 G T PLXNA3 Missense_Mutation p.D1474Y 0.88 deleterious(0) probably_damaging(0.967) TCGA-F5-6814-01 X 153736927 153736927 C T FAM3A Silent p.A51A 0.16 TCGA-F5-6814-01 X 154009912 154009912 T G MPP1 Missense_Mutation p.K371T 0.16 tolerated(0.2) benign(0.003) TCGA-F5-6814-01 X 154158658 154158658 G T F8 Missense_Mutation p.S1136Y 0.78 deleterious(0.01) possibly_damaging(0.578) TCGA-F5-6814-01 X 154563686 154563686 A C CLIC2 Missense_Mutation p.F17L 0.09 deleterious(0.05) benign(0.006) TCGA-F5-6814-01 X 15474163 15474163 G A PIR Silent p.G96G 0.73 TCGA-F5-6814-01 X 154743880 154743880 T G TMLHE Missense_Mutation p.K135N 0.09 tolerated(0.15) benign(0.04) TCGA-F5-6814-01 X 154754246 154754246 G A TMLHE Nonsense_Mutation p.R77* 0.19 TCGA-F5-6814-01 X 155005032 155005032 C A SPRY3 3'UTR 0.46 TCGA-F5-6814-01 X 155005118 155005118 C T SPRY3 3'UTR 0.28 TCGA-F5-6814-01 X 155005650 155005650 G T SPRY3 3'UTR 0.21 TCGA-F5-6814-01 X 155007085 155007085 C A SPRY3 3'UTR 0.32 TCGA-F5-6814-01 X 155008422 155008422 T C SPRY3 3'UTR 0.18 TCGA-F5-6814-01 X 155008534 155008534 A G SPRY3 3'UTR 0.08 TCGA-F5-6814-01 X 155009113 155009113 C A SPRY3 3'UTR 0.20 TCGA-F5-6814-01 X 155010557 155010557 G T SPRY3 3'UTR 0.34 TCGA-F5-6814-01 X 155227268 155227268 G A IL9R 5'UTR 0.53 TCGA-F5-6814-01 X 15584441 15584441 G T ACE2 Missense_Mutation p.F683L 0.50 tolerated_low_confidence(0.18) benign(0.011) TCGA-F5-6814-01 X 15706963 15706963 G A CA5BP1 RNA 0.30 TCGA-F5-6814-01 X 15800620 15800620 C T CA5B Missense_Mutation p.R263W 0.76 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 16168646 16168646 C A GRPR Missense_Mutation p.S211Y 0.69 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 X 1712363 1712363 C T AKAP17A Missense_Mutation p.A3V 0.46 tolerated(0.29) benign(0.073) TCGA-F5-6814-01 X 1718140 1718140 C T AKAP17A Missense_Mutation p.R323C 0.34 deleterious(0) unknown(0) TCGA-F5-6814-01 X 1718623 1718623 C T AKAP17A Intron 0.29 TCGA-F5-6814-01 X 17744983 17744983 A G NHS Silent p.E898E 0.83 TCGA-F5-6814-01 X 17745047 17745047 G A NHS Missense_Mutation p.E920K 0.79 tolerated(0.13) possibly_damaging(0.457) TCGA-F5-6814-01 X 17770069 17770069 G A SCML1 Missense_Mutation p.D280N 0.12 tolerated(0.28) possibly_damaging(0.745) TCGA-F5-6814-01 X 18195868 18195868 C A BEND2 Missense_Mutation p.R484I 0.11 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 X 18600039 18600039 C T CDKL5 Silent p.S144S 0.13 TCGA-F5-6814-01 X 18622141 18622141 T C CDKL5 Missense_Mutation p.F366S 0.36 deleterious_low_confidence(0) benign(0.307) TCGA-F5-6814-01 X 18631296 18631296 C A CDKL5 Missense_Mutation p.S726Y 0.08 deleterious_low_confidence(0) benign(0.046) TCGA-F5-6814-01 X 18797190 18797190 G T PPEF1 Missense_Mutation p.K207N 0.48 deleterious(0.03) benign(0.098) TCGA-F5-6814-01 X 18929077 18929077 A G PHKA2 Silent p.F713F 0.19 TCGA-F5-6814-01 X 19009071 19009071 C T GPR64 Missense_Mutation p.E989K 0.13 deleterious(0.02) possibly_damaging(0.625) TCGA-F5-6814-01 X 19017277 19017277 C A GPR64 Missense_Mutation p.K817N 0.08 tolerated(0.06) probably_damaging(0.956) TCGA-F5-6814-01 X 19022914 19022914 A C GPR64 Missense_Mutation p.I641M 0.85 deleterious(0) probably_damaging(0.973) TCGA-F5-6814-01 X 19379438 19379438 A G PDHA1 3'UTR 0.28 TCGA-F5-6814-01 X 19389112 19389112 C T MAP3K15 Missense_Mutation p.R1122Q 0.83 tolerated(0.44) benign(0.025) TCGA-F5-6814-01 X 19389175 19389175 T G MAP3K15 Missense_Mutation p.K1101T 0.86 deleterious(0.03) benign(0.033) TCGA-F5-6814-01 X 19568169 19568169 T C SH3KBP1 Missense_Mutation p.T473A 0.47 tolerated(0.47) benign(0.058) TCGA-F5-6814-01 X 19983182 19983182 C A CXorf23 Missense_Mutation p.K418N 0.08 tolerated(0.07) benign(0.162) TCGA-F5-6814-01 X 20071061 20071061 G A MAP7D2 Missense_Mutation p.T177M 0.76 tolerated(0.45) benign(0.18) TCGA-F5-6814-01 X 20173361 20173361 G A RPS6KA3 3'UTR 0.56 TCGA-F5-6814-01 X 20227509 20227509 A C RPS6KA3 Missense_Mutation p.I47S 0.24 tolerated(0.06) benign(0.071) TCGA-F5-6814-01 X 22056648 22056648 C T PHEX Silent p.I60I 0.32 TCGA-F5-6814-01 X 22196439 22196439 A C PHEX Missense_Mutation p.K511T 0.48 deleterious(0.02) possibly_damaging(0.756) TCGA-F5-6814-01 X 22244606 22244606 G A PHEX Missense_Mutation p.G649D 0.82 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 22291078 22291078 A C ZNF645 5'UTR 0.26 TCGA-F5-6814-01 X 22291397 22291397 C T ZNF645 Missense_Mutation p.R97C 0.37 deleterious(0.01) benign(0.069) TCGA-F5-6814-01 X 22291413 22291413 G T ZNF645 Missense_Mutation p.R102I 0.16 deleterious(0.01) benign(0.29) TCGA-F5-6814-01 X 24086216 24086216 G A EIF2S3 Missense_Mutation p.G335S 0.14 deleterious(0.05) possibly_damaging(0.641) TCGA-F5-6814-01 X 2408667 2408667 C T ZBED1 Missense_Mutation p.D32N 0.23 tolerated(0.18) probably_damaging(0.994) TCGA-F5-6814-01 X 24226355 24226355 G A ZFX Missense_Mutation p.E321K 0.12 tolerated(0.05) benign(0.233) TCGA-F5-6814-01 X 24229004 24229004 G A ZFX Silent p.S643S 0.13 TCGA-F5-6814-01 X 24545778 24545778 G T PDK3 Missense_Mutation p.D280Y 0.22 deleterious(0) probably_damaging(0.997) TCGA-F5-6814-01 X 24557271 24557271 G T PDK3 Missense_Mutation p.R413I 0.73 deleterious_low_confidence(0.02) benign(0.005) TCGA-F5-6814-01 X 24717591 24717591 A C POLA1 Missense_Mutation p.K25N 0.16 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 X 24721415 24721415 T C POLA1 Silent p.Y66Y 0.10 TCGA-F5-6814-01 X 24859917 24859917 G T POLA1 Missense_Mutation p.E1289D 0.10 tolerated(0.19) benign(0.072) TCGA-F5-6814-01 X 24906160 24906160 G A POLA1 Missense_Mutation p.R1356Q 0.17 tolerated(0.08) possibly_damaging(0.832) TCGA-F5-6814-01 X 25033985 25033985 C T ARX 5'UTR 0.22 TCGA-F5-6814-01 X 26212528 26212528 C T MAGEB6 Missense_Mutation p.R189C 0.75 deleterious(0.04) benign(0.183) TCGA-F5-6814-01 X 26213558 26213558 C A MAGEB6 3'UTR 0.80 TCGA-F5-6814-01 X 27766439 27766439 A C DCAF8L2 Missense_Mutation p.N476T 0.73 deleterious(0.02) benign(0.379) TCGA-F5-6814-01 X 27839722 27839722 T G MAGEB10 Missense_Mutation p.L100R 0.67 tolerated(0.54) benign(0.002) TCGA-F5-6814-01 X 27840281 27840281 G T MAGEB10 Missense_Mutation p.M286I 0.81 deleterious(0.02) probably_damaging(0.956) TCGA-F5-6814-01 X 27998346 27998346 T G DCAF8L1 Missense_Mutation p.K369T 0.14 tolerated(0.15) benign(0.004) TCGA-F5-6814-01 X 2871279 2871279 A G ARSE Missense_Mutation p.V112A 0.78 tolerated(0.17) probably_damaging(0.971) TCGA-F5-6814-01 X 29301120 29301120 C T IL1RAPL1 Nonsense_Mutation p.R50* 0.34 TCGA-F5-6814-01 X 30237844 30237844 C A MAGEB2 3'UTR 0.76 TCGA-F5-6814-01 X 30237975 30237975 A C MAGEB2 3'UTR 0.11 TCGA-F5-6814-01 X 30254550 30254550 A C MAGEB3 Missense_Mutation p.K170T 0.42 deleterious(0) benign(0.284) TCGA-F5-6814-01 X 30254782 30254782 C A MAGEB3 Silent p.L247L 0.75 TCGA-F5-6814-01 X 30270053 30270053 T G MAGEB1 3'UTR 0.44 TCGA-F5-6814-01 X 3030310 3030310 G T ARSF Nonsense_Mutation p.E496* 0.13 TCGA-F5-6814-01 X 30327298 30327298 C T NR0B1 Silent p.A61A 0.70 TCGA-F5-6814-01 X 30578067 30578067 C T CXorf21 Missense_Mutation p.A136T 0.58 tolerated(0.14) probably_damaging(0.951) TCGA-F5-6814-01 X 308342 308342 G A PPP2R3B Silent p.F199F 0.40 TCGA-F5-6814-01 X 31196901 31196901 G A DMD Nonsense_Mutation p.R3370* 0.72 TCGA-F5-6814-01 X 31201001 31201001 G A DMD Silent p.I3276I 0.83 TCGA-F5-6814-01 X 31747823 31747823 C A DMD Nonsense_Mutation p.E2529* 0.10 TCGA-F5-6814-01 X 31950217 31950217 C A DMD Nonsense_Mutation p.E2248* 0.14 TCGA-F5-6814-01 X 32364116 32364116 G A DMD Nonsense_Mutation p.R1844* 0.69 TCGA-F5-6814-01 X 3239289 3239289 C A MXRA5 Missense_Mutation p.Q1479H 0.82 tolerated(0.19) possibly_damaging(0.533) TCGA-F5-6814-01 X 3239978 3239978 A C MXRA5 Missense_Mutation p.S1250A 0.10 tolerated(0.52) benign(0.084) TCGA-F5-6814-01 X 3240974 3240974 A G MXRA5 Missense_Mutation p.Y918H 0.48 tolerated(0.28) benign(0.003) TCGA-F5-6814-01 X 3241512 3241512 C A MXRA5 Missense_Mutation p.K738N 0.33 deleterious(0.01) possibly_damaging(0.796) TCGA-F5-6814-01 X 3242587 3242587 A C MXRA5 Missense_Mutation p.L380W 0.11 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 32482723 32482723 T G DMD Missense_Mutation p.K1086Q 0.79 benign(0.116) TCGA-F5-6814-01 X 32591889 32591889 G T DMD Silent p.L559L 0.38 TCGA-F5-6814-01 X 32613950 32613950 G T DMD Missense_Mutation p.S509Y 0.13 probably_damaging(0.948) TCGA-F5-6814-01 X 32662359 32662359 A G DMD Silent p.I407I 0.36 TCGA-F5-6814-01 X 34148396 34148396 T G FAM47A Missense_Mutation p.K667T 0.78 deleterious(0.04) probably_damaging(0.969) TCGA-F5-6814-01 X 34149566 34149566 C T FAM47A Missense_Mutation p.R277Q 0.24 tolerated(0.51) benign(0.417) TCGA-F5-6814-01 X 34962508 34962508 C T FAM47B Silent p.V520V 0.41 TCGA-F5-6814-01 X 3573416 3573416 G A PRKX Missense_Mutation p.L125F 0.14 deleterious(0.04) possibly_damaging(0.529) TCGA-F5-6814-01 X 35821002 35821002 A C MAGEB16 Missense_Mutation p.N230T 0.11 deleterious(0) possibly_damaging(0.886) TCGA-F5-6814-01 X 35993925 35993925 C T CXorf22 Missense_Mutation p.R870W 0.81 tolerated(0.05) benign(0.07) TCGA-F5-6814-01 X 36091276 36091276 A C CHDC2 Missense_Mutation p.N71H 0.39 tolerated(0.54) benign(0.001) TCGA-F5-6814-01 X 36091332 36091332 G T CHDC2 Missense_Mutation p.K89N 0.39 tolerated(0.05) benign(0.015) TCGA-F5-6814-01 X 36103443 36103443 A G CHDC2 Silent p.K143K 0.19 TCGA-F5-6814-01 X 37026681 37026681 A G FAM47C Silent p.E66E 0.08 TCGA-F5-6814-01 X 37026697 37026697 C T FAM47C Missense_Mutation p.R72C 0.34 tolerated(0.22) benign(0.082) TCGA-F5-6814-01 X 37312481 37312481 C A PRRG1 Silent p.I88I 0.41 TCGA-F5-6814-01 X 37699787 37699787 A C DYNLT3 3'UTR 0.76 TCGA-F5-6814-01 X 37850110 37850110 C A CXorf27 Missense_Mutation p.N6K 0.59 deleterious(0.01) unknown(0) TCGA-F5-6814-01 X 38135994 38135994 T G TM4SF2 Intron 0.08 TCGA-F5-6814-01 X 38540468 38540468 A C TSPAN7 Missense_Mutation p.D203A 0.28 tolerated(0.48) benign(0.004) TCGA-F5-6814-01 X 38664821 38664821 T G MID1IP1 3'UTR 0.81 TCGA-F5-6814-01 X 38665452 38665452 C - MID1IP1 3'UTR 0.29 TCGA-F5-6814-01 X 39913581 39913581 A C BCOR Missense_Mutation p.L1583V 0.34 tolerated(0.05) benign(0.129) TCGA-F5-6814-01 X 40464997 40464997 G A ATP6AP2 Missense_Mutation p.R348Q 0.91 tolerated(0.05) benign(0.093) TCGA-F5-6814-01 X 40506352 40506352 C A CXorf38 Missense_Mutation p.E86D 0.15 tolerated(0.06) possibly_damaging(0.547) TCGA-F5-6814-01 X 40510961 40510961 A T MED14 3'UTR 0.85 TCGA-F5-6814-01 X 40556301 40556301 A C MED14 Missense_Mutation p.L542R 0.81 deleterious(0) probably_damaging(0.979) TCGA-F5-6814-01 X 41056658 41056658 G T USP9X Silent p.T1425T 0.83 TCGA-F5-6814-01 X 41075414 41075414 T G USP9X Missense_Mutation p.L1865R 0.41 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 41091772 41091772 C A USP9X Missense_Mutation p.Q2570K 0.14 deleterious_low_confidence(0) benign(0.011) TCGA-F5-6814-01 X 41556091 41556091 A C GPR34 3'UTR 0.39 TCGA-F5-6814-01 X 45605641 45605641 G A MIR221 RNA 0.83 TCGA-F5-6814-01 X 46332698 46332698 G A KRBOX4 3'UTR 0.21 TCGA-F5-6814-01 X 46529082 46529082 A C SLC9A7 Missense_Mutation p.D251E 0.11 tolerated(0.07) benign(0.277) TCGA-F5-6814-01 X 46713329 46713329 T C RP2 Missense_Mutation p.I174T 0.16 deleterious(0) probably_damaging(0.94) TCGA-F5-6814-01 X 47045008 47045008 G A RBM10 Silent p.Q778Q 0.09 TCGA-F5-6814-01 X 47088138 47088138 G A CDK16 Missense_Mutation p.A562T 0.34 deleterious_low_confidence(0.01) benign(0.23) TCGA-F5-6814-01 X 47272221 47272221 A C ZNF157 Missense_Mutation p.E250A 0.82 deleterious(0.03) benign(0.015) TCGA-F5-6814-01 X 47272631 47272631 G A ZNF157 Missense_Mutation p.E387K 0.15 tolerated(0.16) benign(0.069) TCGA-F5-6814-01 X 47424254 47424254 A C ARAF Missense_Mutation p.I87L 0.50 tolerated(0.7) benign(0.004) TCGA-F5-6814-01 X 47429029 47429029 G A ARAF Silent p.E464E 0.19 TCGA-F5-6814-01 X 47755248 47755248 C T ZNF81 Silent p.F62F 0.83 TCGA-F5-6814-01 X 47835983 47835983 G T ZNF182 Silent p.L501L 0.32 TCGA-F5-6814-01 X 47919896 47919896 G T ZNF630 Silent p.I57I 0.56 TCGA-F5-6814-01 X 47926398 47926398 G T ZNF630 5'UTR 0.67 TCGA-F5-6814-01 X 48244868 48244868 G A SSX4 Missense_Mutation p.D87N 0.19 tolerated(0.11) possibly_damaging(0.866) TCGA-F5-6814-01 X 48546785 48546785 G A WAS Missense_Mutation p.D292N 0.89 tolerated(0.14) possibly_damaging(0.63) TCGA-F5-6814-01 X 48932500 48932500 C T WDR45 Missense_Mutation p.D350N 0.47 tolerated(0.14) probably_damaging(0.988) TCGA-F5-6814-01 X 48979929 48979929 G T GPKOW Missense_Mutation p.F48L 0.68 deleterious(0.01) possibly_damaging(0.682) TCGA-F5-6814-01 X 49072847 49072847 C A CACNA1F Missense_Mutation p.W1088C 0.71 deleterious(0) benign(0.152) TCGA-F5-6814-01 X 49370734 49370734 T C GAGE1 3'UTR 0.31 TCGA-F5-6814-01 X 49645225 49645225 C A USP27X Missense_Mutation p.F105L 0.81 deleterious(0) benign(0.14) TCGA-F5-6814-01 X 49959021 49959021 G T AKAP4 Missense_Mutation p.L115I 0.49 tolerated(0.32) possibly_damaging(0.556) TCGA-F5-6814-01 X 49962206 49962206 T C AKAP4 Missense_Mutation p.K55E 0.09 tolerated(0.07) benign(0.424) TCGA-F5-6814-01 X 50123053 50123053 A C DGKK RNA 0.17 TCGA-F5-6814-01 X 50125539 50125539 G T DGKK RNA 0.78 TCGA-F5-6814-01 X 50167337 50167337 G A DGKK RNA 0.86 TCGA-F5-6814-01 X 50659158 50659158 C T BMP15 Missense_Mutation p.R244W 0.38 tolerated(0.06) benign(0.001) TCGA-F5-6814-01 X 51150068 51150068 C A CXorf67 Missense_Mutation p.S67Y 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-F5-6814-01 X 51239011 51239011 A G NUDT11 Missense_Mutation p.Y96H 0.22 deleterious(0.03) probably_damaging(0.992) TCGA-F5-6814-01 X 51644742 51644742 G A MAGED1 Missense_Mutation p.E741K 0.37 tolerated_low_confidence(0.09) possibly_damaging(0.66) TCGA-F5-6814-01 X 53115172 53115172 A C TSPYL2 Missense_Mutation p.N533T 0.21 tolerated_low_confidence(0.1) benign(0) TCGA-F5-6814-01 X 53247550 53247550 C T KDM5C Missense_Mutation p.D87N 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 X 53460826 53460826 A G HSD17B10 Missense_Mutation p.V12A 0.93 tolerated(0.05) probably_damaging(1) TCGA-F5-6814-01 X 53592026 53592026 A G HUWE1 Splice_Site p.X2294_splice 0.26 TCGA-F5-6814-01 X 54159215 54159215 G A FAM120C Missense_Mutation p.R658C 0.78 deleterious(0.02) benign(0.229) TCGA-F5-6814-01 X 54162953 54162953 G A FAM120C Missense_Mutation p.S410F 0.12 tolerated(0.26) possibly_damaging(0.66) TCGA-F5-6814-01 X 54225015 54225015 T G WNK3 Silent p.P1715P 0.44 TCGA-F5-6814-01 X 54259383 54259383 G A WNK3 Missense_Mutation p.R1567W 0.11 deleterious(0.05) benign(0.022) TCGA-F5-6814-01 X 54263787 54263787 T G WNK3 Missense_Mutation p.E1404D 0.31 deleterious(0.02) benign(0.242) TCGA-F5-6814-01 X 54285711 54285711 G A WNK3 Nonsense_Mutation p.R700* 0.63 TCGA-F5-6814-01 X 54481879 54481879 A G FGD1 Splice_Site p.X672_splice 0.13 TCGA-F5-6814-01 X 54817287 54817287 C T ITIH6 Missense_Mutation p.R200H 0.91 tolerated(0.46) benign(0) TCGA-F5-6814-01 X 54818391 54818391 C T ITIH6 Silent p.Q112Q 0.11 TCGA-F5-6814-01 X 54955802 54955802 C T TRO Missense_Mutation p.A882V 0.15 tolerated(0.06) benign(0.362) TCGA-F5-6814-01 X 55029489 55029489 C T APEX2 Missense_Mutation p.R173C 0.19 deleterious(0) benign(0.094) TCGA-F5-6814-01 X 55041225 55041225 C A ALAS2 Missense_Mutation p.R464S 0.50 tolerated(0.49) benign(0.004) TCGA-F5-6814-01 X 55170270 55170270 G A FAM104B 3'Flank 0.74 TCGA-F5-6814-01 X 55479826 55479826 C T MAGEH1 3'UTR 0.53 TCGA-F5-6814-01 X 55479991 55479991 C T MAGEH1 3'UTR 0.43 TCGA-F5-6814-01 X 55650163 55650163 G T FOXR2 Missense_Mutation p.D7Y 0.08 tolerated(0.09) benign(0.298) TCGA-F5-6814-01 X 55651409 55651409 T G FOXR2 3'UTR 0.85 TCGA-F5-6814-01 X 56296688 56296688 T G KLF8 Missense_Mutation p.F278V 0.79 deleterious(0.02) probably_damaging(0.987) TCGA-F5-6814-01 X 56590420 56590420 G T UBQLN2 Missense_Mutation p.K38N 0.48 deleterious(0) unknown(0) TCGA-F5-6814-01 X 57020850 57020850 G T SPIN3 Silent p.L177L 0.13 TCGA-F5-6814-01 X 57162121 57162121 A C SPIN2A 3'UTR 0.75 TCGA-F5-6814-01 X 57407383 57407383 A C FAAH2 Missense_Mutation p.K306T 0.15 deleterious(0) possibly_damaging(0.596) TCGA-F5-6814-01 X 57475075 57475075 C A FAAH2 Missense_Mutation p.F449L 0.77 tolerated(1) benign(0.02) TCGA-F5-6814-01 X 57515407 57515407 C T FAAH2 3'UTR 0.23 TCGA-F5-6814-01 X 57619921 57619921 T G ZXDB Missense_Mutation p.D480E 0.57 deleterious(0.03) benign(0.119) TCGA-F5-6814-01 X 57621899 57621899 A G ZXDB 3'UTR 0.14 TCGA-F5-6814-01 X 57935135 57935135 G T ZXDA Missense_Mutation p.L574I 0.86 deleterious(0.01) probably_damaging(0.99) TCGA-F5-6814-01 X 57935471 57935471 T G ZXDA Missense_Mutation p.T462P 0.16 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 X 5821231 5821231 G T NLGN4X Silent p.V496V 0.80 TCGA-F5-6814-01 X 5821671 5821671 G T NLGN4X Missense_Mutation p.P350T 0.72 deleterious(0.03) probably_damaging(0.998) TCGA-F5-6814-01 X 5821764 5821764 G A NLGN4X Missense_Mutation p.R319W 0.10 deleterious(0) probably_damaging(0.923) TCGA-F5-6814-01 X 595392 595392 C T SHOX Missense_Mutation p.S106L 0.44 tolerated(0.19) benign(0.382) TCGA-F5-6814-01 X 595450 595450 G A SHOX Silent p.T125T 0.14 TCGA-F5-6814-01 X 6069225 6069225 A G NLGN4X Missense_Mutation p.S95P 0.32 tolerated(0.38) possibly_damaging(0.539) TCGA-F5-6814-01 X 62898354 62898354 G T ARHGEF9 Missense_Mutation p.F220L 0.30 deleterious(0.02) probably_damaging(0.924) TCGA-F5-6814-01 X 63411781 63411781 T G AMER1 Missense_Mutation p.E462D 0.11 deleterious(0.02) benign(0.4) TCGA-F5-6814-01 X 63444768 63444768 G T ASB12 Missense_Mutation p.L255I 0.53 tolerated(0.46) benign(0.141) TCGA-F5-6814-01 X 63556006 63556006 G T MTMR8 Silent p.I368I 0.72 TCGA-F5-6814-01 X 63579383 63579383 G A MTMR8 Missense_Mutation p.R17C 0.32 tolerated(0.05) benign(0.007) TCGA-F5-6814-01 X 64751266 64751266 T G LAS1L Missense_Mutation p.K162T 0.20 deleterious(0.05) probably_damaging(0.934) TCGA-F5-6814-01 X 65819323 65819323 G T EDA2R 3'Flank 0.26 TCGA-F5-6814-01 X 66942700 66942700 C A AR Missense_Mutation p.F827L 0.21 tolerated(0.47) benign(0.033) TCGA-F5-6814-01 X 68725597 68725597 G A FAM155B Missense_Mutation p.E158K 0.41 tolerated(0.83) probably_damaging(0.956) TCGA-F5-6814-01 X 69504449 69504449 G A RAB41 Missense_Mutation p.E208K 0.67 tolerated(1) benign(0.002) TCGA-F5-6814-01 X 69639929 69639929 C T KIF4A Silent p.C1171C 0.44 TCGA-F5-6814-01 X 69960637 69960637 G T TEX11 Missense_Mutation p.L268I 0.20 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 70349009 70349009 G A MED12 Missense_Mutation p.R1174H 0.53 benign(0.053) TCGA-F5-6814-01 X 70524115 70524115 C T ITGB1BP2 Missense_Mutation p.P240S 0.45 deleterious(0.02) possibly_damaging(0.906) TCGA-F5-6814-01 X 70781747 70781747 T G OGT Missense_Mutation p.I658M 0.17 deleterious(0) possibly_damaging(0.656) TCGA-F5-6814-01 X 70824147 70824147 T A ACRC Missense_Mutation p.D340E 0.11 unknown(0) TCGA-F5-6814-01 X 70836736 70836736 C T CXCR3 Missense_Mutation p.E243K 0.76 tolerated(0.72) benign(0.008) TCGA-F5-6814-01 X 71350011 71350011 T G RGAG4 Missense_Mutation p.Q460H 0.52 tolerated_low_confidence(0.08) unknown(0) TCGA-F5-6814-01 X 71351349 71351349 C T RGAG4 Silent p.A14A 0.11 TCGA-F5-6814-01 X 71427032 71427032 A G ERCC6L Missense_Mutation p.Y529H 0.84 deleterious(0.02) probably_damaging(0.992) TCGA-F5-6814-01 X 71800797 71800797 A G PHKA1 3'UTR 0.82 TCGA-F5-6814-01 X 72298003 72298003 G T PABPC1L2A 3'UTR 0.42 TCGA-F5-6814-01 X 72667221 72667221 C T CDX4 Silent p.F44F 0.88 TCGA-F5-6814-01 X 73744567 73744567 C A SLC16A2 Missense_Mutation p.R317S 0.92 tolerated(0.11) benign(0.081) TCGA-F5-6814-01 X 73963592 73963592 T G KIAA2022 Missense_Mutation p.E267A 0.51 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 X 73963992 73963992 G A KIAA2022 Silent p.L134L 0.71 TCGA-F5-6814-01 X 74334625 74334625 T C ABCB7 Silent p.G71G 0.88 TCGA-F5-6814-01 X 75004272 75004272 T G MAGEE2 Missense_Mutation p.K205N 0.48 deleterious(0) probably_damaging(0.998) TCGA-F5-6814-01 X 75650324 75650324 A C MAGEE1 Missense_Mutation p.K667N 0.81 deleterious(0) probably_damaging(0.963) TCGA-F5-6814-01 X 76711967 76711967 C T FGF16 Missense_Mutation p.P102L 0.82 benign(0.026) TCGA-F5-6814-01 X 76888835 76888835 C A ATRX Missense_Mutation p.R1665I 0.88 probably_damaging(1) TCGA-F5-6814-01 X 76939019 76939019 T G ATRX Missense_Mutation p.K577Q 0.22 probably_damaging(0.996) TCGA-F5-6814-01 X 76939295 76939295 T G ATRX Missense_Mutation p.T485P 0.15 benign(0.024) TCGA-F5-6814-01 X 77130922 77130922 T C MAGT1 Intron 0.68 TCGA-F5-6814-01 X 77224622 77224622 C A PGAM4 Missense_Mutation p.V172F 0.85 tolerated(0.06) possibly_damaging(0.629) TCGA-F5-6814-01 X 77258584 77258584 C A ATP7A Missense_Mutation p.L520I 0.38 deleterious(0) probably_damaging(0.999) TCGA-F5-6814-01 X 77373610 77373610 A G PGK1 Missense_Mutation p.N195S 0.17 tolerated(0.17) benign(0.002) TCGA-F5-6814-01 X 77378746 77378746 T C PGK1 Missense_Mutation p.S271P 0.47 deleterious(0.03) benign(0.095) TCGA-F5-6814-01 X 78010805 78010805 C T LPAR4 Missense_Mutation p.R147C 0.47 deleterious(0) probably_damaging(0.987) TCGA-F5-6814-01 X 78011930 78011930 G T LPAR4 3'UTR 0.36 TCGA-F5-6814-01 X 78012426 78012426 A G LPAR4 3'UTR 0.79 TCGA-F5-6814-01 X 7812156 7812156 G T VCX 3'UTR 0.14 TCGA-F5-6814-01 X 78216860 78216860 A G P2RY10 Silent p.R281R 0.28 TCGA-F5-6814-01 X 78217227 78217227 G T P2RY10 3'UTR 0.78 TCGA-F5-6814-01 X 78427182 78427182 G T GPR174 Missense_Mutation p.Q226H 0.12 tolerated(0.12) benign(0.001) TCGA-F5-6814-01 X 78618182 78618182 T C ITM2A Missense_Mutation p.T150A 0.11 deleterious(0) probably_damaging(0.936) TCGA-F5-6814-01 X 79277829 79277829 A G TBX22 Missense_Mutation p.K21E 0.77 deleterious(0.02) probably_damaging(0.998) TCGA-F5-6814-01 X 79286136 79286136 C G TBX22 Nonsense_Mutation p.Y363* 0.12 TCGA-F5-6814-01 X 79286225 79286225 G T TBX22 Missense_Mutation p.R393I 0.87 deleterious(0) benign(0.316) TCGA-F5-6814-01 X 79286441 79286441 G T TBX22 Missense_Mutation p.S465I 0.80 deleterious(0.01) benign(0.223) TCGA-F5-6814-01 X 79700516 79700516 T G FAM46D 3'UTR 0.14 TCGA-F5-6814-01 X 79939572 79939572 A C BRWD3 Missense_Mutation p.F1390L 0.22 tolerated(0.51) benign(0.105) TCGA-F5-6814-01 X 80532569 80532569 G T SH3BGRL Missense_Mutation p.E44D 0.51 tolerated(0.37) benign(0.003) TCGA-F5-6814-01 X 80552810 80552810 G T SH3BGRL 3'UTR 0.85 TCGA-F5-6814-01 X 83128546 83128546 C A CYLC1 Missense_Mutation p.S277Y 0.45 tolerated_low_confidence(0.05) unknown(0) TCGA-F5-6814-01 X 83129077 83129077 C A CYLC1 Nonsense_Mutation p.S454* 0.79 TCGA-F5-6814-01 X 83591842 83591842 T C HDX Silent p.E569E 0.25 TCGA-F5-6814-01 X 83724545 83724545 C T HDX Silent p.K62K 0.72 TCGA-F5-6814-01 X 84362578 84362578 T G SATL1 Missense_Mutation p.K466T 0.81 tolerated(0.71) probably_damaging(0.922) TCGA-F5-6814-01 X 84525967 84525967 G A ZNF711 Silent p.P473P 0.22 TCGA-F5-6814-01 X 8536292 8536292 C T KAL1 Silent p.S396S 0.61 TCGA-F5-6814-01 X 85403673 85403673 G A DACH2 Missense_Mutation p.G17S 0.15 tolerated_low_confidence(0.44) benign(0.012) TCGA-F5-6814-01 X 8555899 8555899 C A KAL1 Missense_Mutation p.R221I 0.24 deleterious(0) probably_damaging(0.992) TCGA-F5-6814-01 X 86877304 86877304 C T KLHL4 Missense_Mutation p.P340S 0.75 tolerated(0.1) probably_damaging(1) TCGA-F5-6814-01 X 86890585 86890585 G T KLHL4 Missense_Mutation p.D579Y 0.69 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 88008719 88008719 T G CPXCR1 Missense_Mutation p.S102A 0.22 tolerated(0.73) possibly_damaging(0.467) TCGA-F5-6814-01 X 88008805 88008805 T A CPXCR1 Silent p.T130T 0.17 TCGA-F5-6814-01 X 89177280 89177280 C T TGIF2LX Missense_Mutation p.R66C 0.35 deleterious(0.04) probably_damaging(0.985) TCGA-F5-6814-01 X 90691594 90691594 G A PABPC5 Missense_Mutation p.G340S 0.09 tolerated(1) benign(0.001) TCGA-F5-6814-01 X 91134320 91134320 T C PCDH11X Intron 0.33 TCGA-F5-6814-01 X 92927045 92927045 C T NAP1L3 Missense_Mutation p.R420H 0.53 tolerated(0.27) benign(0) TCGA-F5-6814-01 X 92964554 92964554 A C FAM133A Missense_Mutation p.K46Q 0.73 deleterious_low_confidence(0.03) possibly_damaging(0.885) TCGA-F5-6814-01 X 92965761 92965761 A C FAM133A 3'UTR 0.54 TCGA-F5-6814-01 X 92965995 92965995 T G FAM133A 3'UTR 0.10 TCGA-F5-6814-01 X 9709487 9709487 G A GPR143 Missense_Mutation p.S259L 0.10 deleterious(0) possibly_damaging(0.595) TCGA-F5-6814-01 X 9907336 9907336 A G SHROOM2 Missense_Mutation p.D1414G 0.10 tolerated(0.1) benign(0.01) TCGA-F5-6814-01 X 99662008 99662008 C T PCDH19 Missense_Mutation p.E530K 0.14 deleterious(0.02) probably_damaging(0.95) TCGA-F5-6814-01 X 99662040 99662040 C T PCDH19 Missense_Mutation p.R519Q 0.44 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 X 99917338 99917338 G T SRPX2 Missense_Mutation p.R110L 0.16 tolerated(0.05) possibly_damaging(0.878) TCGA-F5-6814-01 Y 14903548 14903548 T G USP9Y Missense_Mutation p.I1268M 0.26 tolerated(0.16) benign(0.243) TCGA-F5-6814-01 Y 15478207 15478207 T G UTY Missense_Mutation p.Y269S 0.14 tolerated(0.21) benign(0.061) TCGA-F5-6814-01 Y 16845411 16845411 T G NLGN4Y Intron 0.77 TCGA-F5-6814-01 Y 16936066 16936066 A T NLGN4Y Splice_Site p.X209_splice 0.19 TCGA-F5-6814-01 Y 16936068 16936068 G T NLGN4Y Missense_Mutation p.G209V 0.19 deleterious(0) probably_damaging(1) TCGA-F5-6814-01 Y 21868341 21868341 G A KDM5D Missense_Mutation p.R1419C 0.30 deleterious(0.04) benign(0.014) TCGA-F5-6814-01 Y 21906281 21906281 C T KDM5D Missense_Mutation p.R47H 0.57 deleterious(0.01) benign(0.299) TCGA-F5-6814-01 Y 22754263 22754263 C A EIF1AY 3'UTR 0.19 TCGA-F5-6814-01 Y 22754382 22754382 C A EIF1AY 3'UTR 0.61 TCGA-F5-6814-01 Y 2847289 2847289 G A ZFY Missense_Mutation p.R554Q 0.77 deleterious(0.01) probably_damaging(0.966) TCGA-F5-6814-01 Y 4924990 4924990 C T PCDH11Y Silent p.F42F 0.45 TCGA-F5-6814-01 Y 4966465 4966465 G T PCDH11Y Missense_Mutation p.K282N 0.74 deleterious(0.02) possibly_damaging(0.607) TCGA-F5-6814-01 Y 4966477 4966477 T G PCDH11Y Missense_Mutation p.I286M 0.10 deleterious(0.04) benign(0.198) TCGA-F5-6814-01 Y 5369107 5369107 C T PCDH11Y Missense_Mutation p.R1047C 0.48 deleterious(0) probably_damaging(0.944) TCGA-F5-6814-01 Y 5605658 5605658 C T PCDH11Y Missense_Mutation p.A1233V 0.08 tolerated_low_confidence(0.34) benign(0.031) TCGA-F5-6814-01 Y 6911055 6911055 G T TBL1Y Missense_Mutation p.E31D 0.68 deleterious(0) probably_damaging(0.996) TCGA-F5-6861-01 10 105198451 105198451 C T PDCD11 Missense_Mutation p.P1304L 0.23 deleterious(0.05) benign(0.397) TCGA-F5-6861-01 10 105238631 105238631 C A CALHM3 Silent p.L53L 0.26 TCGA-F5-6861-01 10 108357110 108357110 C T SORCS1 Silent p.A1088A 0.21 TCGA-F5-6861-01 10 114920434 114920434 T C TCF7L2 Missense_Mutation p.W459R 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-F5-6861-01 10 1230909 1230909 G A ADARB2 Silent p.S645S 0.25 TCGA-F5-6861-01 10 127789729 127789729 C T ADAM12 Missense_Mutation p.D278N 0.18 tolerated(0.5) benign(0.319) TCGA-F5-6861-01 11 15134112 15134112 G C INSC Splice_Site p.X32_splice 0.28 TCGA-F5-6861-01 11 33564339 33564339 A G KIAA1549L Silent p.E113E 0.30 TCGA-F5-6861-01 11 400094 400094 G T PKP3 Missense_Mutation p.Q467H 0.57 tolerated(0.29) probably_damaging(0.998) TCGA-F5-6861-01 12 101333217 101333217 A G ANO4 Silent p.E60E 0.08 TCGA-F5-6861-01 12 113596730 113596730 G A DDX54 Silent p.F867F 0.29 TCGA-F5-6861-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.33 deleterious(0) possibly_damaging(0.479) TCGA-F5-6861-01 12 43771274 43771274 C T ADAMTS20 Missense_Mutation p.R1630Q 0.19 tolerated(1) benign(0.003) TCGA-F5-6861-01 12 5687137 5687137 A G ANO2 Missense_Mutation p.F808S 0.10 deleterious(0) possibly_damaging(0.628) TCGA-F5-6861-01 12 73014937 73014937 C T TRHDE Missense_Mutation p.P795L 0.27 tolerated(0.74) possibly_damaging(0.841) TCGA-F5-6861-01 13 103703730 103703730 C T SLC10A2 Missense_Mutation p.G213E 0.34 tolerated(0.07) possibly_damaging(0.842) TCGA-F5-6861-01 13 111372025 111372025 C T ING1 Nonsense_Mutation p.R339* 0.26 TCGA-F5-6861-01 13 25473680 25473680 T C CENPJ Silent p.L956L 0.29 TCGA-F5-6861-01 13 36686055 36686055 T G DCLK1 Missense_Mutation p.K225T 0.27 deleterious(0) unknown(0) TCGA-F5-6861-01 13 50591985 50591985 G T TRIM13 3'Flank 0.20 TCGA-F5-6861-01 14 20019700 20019700 C T POTEM Missense_Mutation p.R174K 0.38 deleterious(0.01) probably_damaging(0.963) TCGA-F5-6861-01 15 75684941 75684941 G A SIN3A Silent p.L831L 0.25 TCGA-F5-6861-01 16 21328449 21328449 T C CRYM-AS1 RNA 0.22 TCGA-F5-6861-01 16 24183594 24183594 C T PRKCB Missense_Mutation p.R415C 0.19 deleterious(0) probably_damaging(0.999) TCGA-F5-6861-01 16 27441375 27441375 A G IL21R Splice_Site 0.10 TCGA-F5-6861-01 16 82032929 82032929 A C SDR42E1 Missense_Mutation p.H323Q 0.34 deleterious(0) probably_damaging(0.996) TCGA-F5-6861-01 16 85015570 85015570 C A ZDHHC7 Nonsense_Mutation p.E153* 0.20 TCGA-F5-6861-01 17 30202425 30202425 G A UTP6 Missense_Mutation p.S378L 0.23 tolerated(1) benign(0) TCGA-F5-6861-01 17 37947761 37947761 A G IKZF3 Missense_Mutation p.L167P 0.18 deleterious(0) probably_damaging(1) TCGA-F5-6861-01 17 64219877 64219877 G A APOH Silent p.G118G 0.15 TCGA-F5-6861-01 17 72349711 72349711 T C KIF19 Missense_Mutation p.S767P 0.20 tolerated(0.05) benign(0.111) TCGA-F5-6861-01 17 8249012 8249012 A G ODF4 Missense_Mutation p.S206G 0.10 tolerated(0.45) benign(0.107) TCGA-F5-6861-01 18 25570188 25570188 C T CDH2 Missense_Mutation p.V491I 0.16 tolerated(0.19) benign(0.006) TCGA-F5-6861-01 19 10940849 10940849 C T DNM2 Missense_Mutation p.R780W 0.22 deleterious_low_confidence(0.02) probably_damaging(0.973) TCGA-F5-6861-01 19 11559393 11559393 A G PRKCSH Missense_Mutation p.N405S 0.30 tolerated(0.94) benign(0.003) TCGA-F5-6861-01 19 3747912 3747912 G A TJP3 Missense_Mutation p.A824T 0.26 tolerated(0.07) benign(0.043) TCGA-F5-6861-01 19 41245289 41245289 C G ITPKC Missense_Mutation p.H626D 0.30 deleterious(0) probably_damaging(1) TCGA-F5-6861-01 19 49637363 49637363 G A PPFIA3 Missense_Mutation p.E440K 0.24 deleterious(0.01) probably_damaging(0.96) TCGA-F5-6861-01 19 50475171 50475171 C T VRK3 3'Flank 0.24 TCGA-F5-6861-01 19 51274081 51274081 C T GPR32 Missense_Mutation p.T75M 0.26 deleterious(0) probably_damaging(0.989) TCGA-F5-6861-01 19 51890495 51890495 C T LIM2 Missense_Mutation p.R68H 0.36 tolerated_low_confidence(0.54) benign(0) TCGA-F5-6861-01 19 52272624 52272624 G A FPR2 Missense_Mutation p.R238H 0.23 tolerated(0.1) possibly_damaging(0.458) TCGA-F5-6861-01 19 57985398 57985398 G A ZNF772 Silent p.F238F 0.25 TCGA-F5-6861-01 1 109395063 109395063 T G AKNAD1 Missense_Mutation p.K75T 0.39 tolerated(0.06) probably_damaging(0.94) TCGA-F5-6861-01 1 110774884 110774884 G A KCNC4 Missense_Mutation p.E621K 0.15 tolerated_low_confidence(1) benign(0) TCGA-F5-6861-01 1 151109425 151109425 A G SEMA6C Silent p.T294T 0.10 TCGA-F5-6861-01 1 152281268 152281268 T A FLG Nonsense_Mutation p.R2032* 0.26 TCGA-F5-6861-01 1 172051009 172051009 A G DNM3 Missense_Mutation p.N487S 0.23 deleterious(0) probably_damaging(0.921) TCGA-F5-6861-01 1 248202511 248202511 A G OR2L2 3'UTR 0.15 TCGA-F5-6861-01 1 59042007 59042007 G A TACSTD2 Silent p.T274T 0.25 TCGA-F5-6861-01 20 45169771 45169771 C T OCSTAMP 3'UTR 0.27 TCGA-F5-6861-01 20 62421849 62421849 C T ZBTB46 Missense_Mutation p.D88N 0.13 deleterious(0.05) probably_damaging(0.996) TCGA-F5-6861-01 22 26059623 26059623 C T ADRBK2 Silent p.H131H 0.25 TCGA-F5-6861-01 22 44592040 44592040 G A PARVG Missense_Mutation p.V197I 0.25 tolerated(0.11) benign(0.002) TCGA-F5-6861-01 2 101911642 101911642 T C RNF149 Silent p.G154G 0.29 TCGA-F5-6861-01 2 103013115 103013115 G - IL18R1 Frame_Shift_Del p.E466Kfs*6 0.24 TCGA-F5-6861-01 2 112686734 112686734 G A MERTK Silent p.P33P 0.24 TCGA-F5-6861-01 2 131132239 131132239 G T PTPN18 3'UTR 0.13 TCGA-F5-6861-01 2 131674773 131674773 C T ARHGEF4 Intron 0.30 TCGA-F5-6861-01 2 227660723 227660723 C - IRS1 Frame_Shift_Del p.G911Afs*32 0.11 TCGA-F5-6861-01 2 70315180 70315180 T A PCBP1 Missense_Mutation p.L102Q 0.12 deleterious(0) probably_damaging(0.992) TCGA-F5-6861-01 2 71649972 71649972 G A ZNF638 Missense_Mutation p.E1110K 0.26 tolerated(0.09) probably_damaging(0.997) TCGA-F5-6861-01 2 72960237 72960237 G A EXOC6B Missense_Mutation p.T97M 0.28 deleterious(0.05) possibly_damaging(0.584) TCGA-F5-6861-01 3 123010074 123010074 C T ADCY5 Silent p.A1071A 0.14 TCGA-F5-6861-01 3 125695946 125695946 C T ROPN1B Missense_Mutation p.R112C 0.31 tolerated(0.21) benign(0.002) TCGA-F5-6861-01 3 127358092 127358092 G A PODXL2 Silent p.A25A 0.16 TCGA-F5-6861-01 3 166960301 166960301 C A ZBBX Missense_Mutation p.E795D 0.24 tolerated(0.17) benign(0.133) TCGA-F5-6861-01 3 170184948 170184948 C A SLC7A14 Silent p.A737A 0.27 TCGA-F5-6861-01 3 174951757 174951757 G A NAALADL2 Missense_Mutation p.M194I 0.26 tolerated(0.21) benign(0.001) TCGA-F5-6861-01 3 25668312 25668312 G C TOP2B Missense_Mutation p.T682R 0.19 tolerated(0.22) benign(0.039) TCGA-F5-6861-01 3 38945502 38945502 C T SCN11A Missense_Mutation p.V566I 0.18 tolerated(1) benign(0) TCGA-F5-6861-01 3 78666967 78666967 G A ROBO1 Missense_Mutation p.T1367M 0.27 deleterious(0) probably_damaging(0.993) TCGA-F5-6861-01 3 9876600 9876600 C T TTLL3 Intron 0.14 TCGA-F5-6861-01 4 100822155 100822155 A T DNAJB14 3'UTR 0.26 TCGA-F5-6861-01 4 102751320 102751320 A G BANK1 Silent p.E142E 0.20 TCGA-F5-6861-01 4 128726299 128726299 C A HSPA4L Missense_Mutation p.Q353K 0.17 tolerated(1) benign(0.004) TCGA-F5-6861-01 4 26491094 26491094 G A CCKAR Missense_Mutation p.A42V 0.22 tolerated(0.22) benign(0.179) TCGA-F5-6861-01 4 69203506 69203506 G C YTHDC1 Missense_Mutation p.N81K 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-F5-6861-01 5 101735262 101735262 G A SLCO6A1 Missense_Mutation p.T604M 0.26 tolerated(0.13) benign(0.01) TCGA-F5-6861-01 5 112175423 112175423 C T APC Nonsense_Mutation p.Q1378* 0.49 TCGA-F5-6861-01 5 127599224 127599224 G A FBN2 Silent p.D2695D 0.25 TCGA-F5-6861-01 5 135692663 135692663 G A TRPC7 Missense_Mutation p.T138M 0.18 tolerated(0.07) possibly_damaging(0.708) TCGA-F5-6861-01 5 150028687 150028687 C T SYNPO Missense_Mutation p.P528S 0.25 deleterious_low_confidence(0.01) probably_damaging(0.973) TCGA-F5-6861-01 5 169291345 169291345 C A FAM196B Missense_Mutation p.A514S 0.38 tolerated(0.06) benign(0.26) TCGA-F5-6861-01 5 171386 171386 G A PLEKHG4B Missense_Mutation p.V937M 0.19 deleterious(0) probably_damaging(0.992) TCGA-F5-6861-01 5 178559841 178559841 C T ADAMTS2 Missense_Mutation p.G716R 0.16 deleterious(0) probably_damaging(1) TCGA-F5-6861-01 5 64892960 64892960 C T TRIM23 Silent p.T409T 0.23 TCGA-F5-6861-01 5 98206409 98206409 T - CHD1 Frame_Shift_Del p.E1321Kfs*22 0.09 TCGA-F5-6861-01 6 102513720 102513720 G C GRIK2 Intron 0.19 TCGA-F5-6861-01 6 10894418 10894418 G A SYCP2L Missense_Mutation p.R106Q 0.33 tolerated(1) benign(0.001) TCGA-F5-6861-01 6 122775001 122775001 A C SERINC1 Missense_Mutation p.L168R 0.28 deleterious(0) probably_damaging(1) TCGA-F5-6861-01 6 144086566 144086566 C G PHACTR2 Missense_Mutation p.S288C 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.771) TCGA-F5-6861-01 6 27220606 27220606 G C PRSS16 Missense_Mutation p.G343A 0.20 tolerated(0.14) benign(0.068) TCGA-F5-6861-01 6 32117030 32117030 G A PRRT1 Missense_Mutation p.A297V 0.24 deleterious(0.02) possibly_damaging(0.502) TCGA-F5-6861-01 6 37626090 37626090 G A MDGA1 Missense_Mutation p.R105C 0.23 deleterious(0) probably_damaging(0.938) TCGA-F5-6861-01 6 84368759 84368759 G A SNAP91 Missense_Mutation p.P169S 0.09 deleterious(0.01) unknown(0) TCGA-F5-6861-01 7 100088629 100088629 C T NYAP1 Silent p.L727L 0.33 TCGA-F5-6861-01 7 103185714 103185714 T G RELN Missense_Mutation p.Y2127S 0.33 deleterious(0.01) possibly_damaging(0.823) TCGA-F5-6861-01 7 157000485 157000485 G T UBE3C Silent p.G555G 0.23 TCGA-F5-6861-01 7 24681382 24681382 T G MPP6 Missense_Mutation p.N55K 0.24 tolerated(0.05) possibly_damaging(0.833) TCGA-F5-6861-01 7 34192746 34192746 C T BMPER Missense_Mutation p.P640L 0.12 deleterious(0) probably_damaging(0.984) TCGA-F5-6861-01 7 36336621 36336621 C G EEPD1 Missense_Mutation p.I445M 0.29 deleterious(0.03) benign(0.13) TCGA-F5-6861-01 7 42977022 42977022 A G MRPL32 Silent p.R138R 0.35 TCGA-F5-6861-01 7 97867828 97867828 T C TECPR1 Missense_Mutation p.N343S 0.09 deleterious(0.04) benign(0.191) TCGA-F5-6861-01 8 105361735 105361735 C T DCSTAMP Missense_Mutation p.R319W 0.35 tolerated(0.3) benign(0.006) TCGA-F5-6861-01 8 133759237 133759237 G C TMEM71 Missense_Mutation p.N127K 0.28 tolerated(0.95) benign(0.004) TCGA-F5-6861-01 8 133895218 133895218 G A TG Missense_Mutation p.R350Q 0.31 tolerated(0.1) benign(0.161) TCGA-F5-6861-01 8 143822655 143822655 C T SLURP1 Missense_Mutation p.C73Y 0.44 tolerated(0.06) benign(0.401) TCGA-F5-6861-01 8 144946551 144946551 C T EPPK1 Missense_Mutation p.V291I 0.18 probably_damaging(0.96) TCGA-F5-6861-01 8 1873526 1873526 G A ARHGEF10 Missense_Mutation p.V856I 0.22 tolerated(0.06) possibly_damaging(0.527) TCGA-F5-6861-01 8 2077127 2077127 C T MYOM2 Missense_Mutation p.S1236L 0.22 deleterious(0) benign(0.221) TCGA-F5-6861-01 8 52323863 52323863 T A PXDNL Missense_Mutation p.Q670L 0.19 tolerated(0.4) benign(0.011) TCGA-F5-6861-01 9 101156505 101156505 C T GABBR2 Missense_Mutation p.A444T 0.18 deleterious(0.01) benign(0.044) TCGA-F5-6861-01 9 117692516 117692516 G A TNFSF8 Missense_Mutation p.P23L 0.18 deleterious(0.02) possibly_damaging(0.647) TCGA-F5-6861-01 9 4844526 4844526 T C RCL1 Missense_Mutation p.S238P 0.35 deleterious(0) probably_damaging(1) TCGA-F5-6861-01 X 110971423 110971423 G A ALG13 Missense_Mutation p.G753D 0.26 tolerated(0.31) benign(0.012) TCGA-F5-6861-01 X 111155896 111155896 G A TRPC5 Missense_Mutation p.R175C 0.17 deleterious(0) probably_damaging(0.983) TCGA-F5-6861-01 X 122599600 122599600 C T GRIA3 Silent p.Y800Y 0.28 TCGA-F5-6861-01 X 122799546 122799546 C T THOC2 Missense_Mutation p.D445N 0.20 deleterious(0) possibly_damaging(0.791) TCGA-F5-6861-01 X 135957714 135957714 C T RBMX Missense_Mutation p.G191E 0.23 tolerated(0.06) possibly_damaging(0.791) TCGA-F5-6861-01 X 137717737 137717737 C T FGF13 Missense_Mutation p.R171H 0.16 deleterious(0.01) benign(0.281) TCGA-F5-6861-01 X 22012497 22012497 T A SMS 3'UTR 0.26 TCGA-F5-6861-01 X 2407695 2407695 T A ZBED1 Missense_Mutation p.S356C 0.21 deleterious(0) possibly_damaging(0.844) TCGA-F5-6861-01 X 27840025 27840025 C G MAGEB10 Missense_Mutation p.T201S 0.16 tolerated(0.06) possibly_damaging(0.753) TCGA-F5-6861-01 X 47517021 47517021 C G UXT Missense_Mutation p.E78D 0.36 tolerated(0.23) benign(0.084) TCGA-F5-6861-01 X 48325507 48325507 C T SLC38A5 Intron 0.38 TCGA-F5-6861-01 X 53436389 53436389 G A SMC1A Missense_Mutation p.R434W 0.22 deleterious(0) probably_damaging(1) TCGA-F5-6861-01 X 7267987 7267987 C T STS Silent p.N479N 0.27 TCGA-F5-6861-01 X 90691044 90691044 C T PABPC5 Silent p.A156A 0.33 TCGA-F5-6863-01 10 99344597 99344597 T C PI4K2A Missense_Mutation p.F46S 0.10 deleterious_low_confidence(0) benign(0.307) TCGA-F5-6863-01 11 131781470 131781470 G A NTM Missense_Mutation p.R32H 0.26 deleterious(0.04) probably_damaging(0.982) TCGA-F5-6863-01 11 4824816 4824816 G T OR52R1 Nonsense_Mutation p.Y265* 0.36 TCGA-F5-6863-01 11 57563960 57563960 G A CTNND1 Missense_Mutation p.R151Q 0.49 deleterious(0.03) probably_damaging(0.997) TCGA-F5-6863-01 11 58207304 58207304 A G OR5B12 Silent p.T107T 0.35 TCGA-F5-6863-01 11 72465984 72465984 G A STARD10 Silent p.G278G 0.35 TCGA-F5-6863-01 12 10223946 10223946 C G CLEC1A Missense_Mutation p.G277R 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-F5-6863-01 12 118105333 118105333 C T KSR2 Missense_Mutation p.A373T 0.54 tolerated(0.46) benign(0.004) TCGA-F5-6863-01 12 130387938 130387938 A G TMEM132D 5'UTR 0.33 TCGA-F5-6863-01 12 7244245 7244245 A G C1R Missense_Mutation p.F11L 0.34 tolerated(0.41) benign(0.045) TCGA-F5-6863-01 13 103698525 103698525 C T SLC10A2 Silent p.S335S 0.04 TCGA-F5-6863-01 13 110434582 110434582 C T IRS2 Silent p.P1273P 0.38 TCGA-F5-6863-01 13 20279955 20279955 G A PSPC1 Silent p.A411A 0.09 TCGA-F5-6863-01 13 23907517 23907517 G A SACS Missense_Mutation p.L3500F 0.47 probably_damaging(0.995) TCGA-F5-6863-01 13 32798442 32798442 G A FRY Silent p.P1612P 0.40 TCGA-F5-6863-01 13 37679273 37679273 C T CSNK1A1L Missense_Mutation p.E41K 0.35 deleterious_low_confidence(0.04) benign(0.095) TCGA-F5-6863-01 13 88330685 88330685 C T SLITRK5 3'UTR 0.10 TCGA-F5-6863-01 14 104212794 104212794 C T PPP1R13B Missense_Mutation p.G356R 0.38 deleterious(0.01) benign(0.008) TCGA-F5-6863-01 14 86089626 86089626 G T FLRT2 Nonsense_Mutation p.E590* 0.26 TCGA-F5-6863-01 14 94568272 94568272 C T IFI27L1 Silent p.N58N 0.39 TCGA-F5-6863-01 15 24921571 24921571 C T NPAP1 Missense_Mutation p.S186L 0.40 tolerated(0.07) possibly_damaging(0.8) TCGA-F5-6863-01 15 91452591 91452591 T C MAN2A2 Missense_Mutation p.S411P 0.10 deleterious(0) possibly_damaging(0.87) TCGA-F5-6863-01 16 1248716 1248716 G A CACNA1H Missense_Mutation p.V249I 0.37 deleterious(0) probably_damaging(0.997) TCGA-F5-6863-01 16 51173802 51173802 G A SALL1 Silent p.N777N 0.28 TCGA-F5-6863-01 16 66437074 66437074 C T CDH5 3'UTR 0.69 TCGA-F5-6863-01 16 70358520 70358520 G C DDX19B Missense_Mutation p.G141A 0.55 deleterious(0) probably_damaging(0.987) TCGA-F5-6863-01 16 90001935 90001935 G A TUBB3 Missense_Mutation p.R359H 0.46 tolerated_low_confidence(0.07) benign(0.015) TCGA-F5-6863-01 17 18862055 18862055 A G SLC5A10 Missense_Mutation p.T58A 0.09 tolerated(0.59) benign(0.003) TCGA-F5-6863-01 17 34959017 34959018 - G MRM1 Frame_Shift_Ins p.A195Gfs*11 0.68 TCGA-F5-6863-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.60 deleterious(0) probably_damaging(1) TCGA-F5-6863-01 19 11596491 11596491 C A ZNF653 Missense_Mutation p.R517L 0.37 deleterious(0) probably_damaging(0.999) TCGA-F5-6863-01 19 31025762 31025762 G A ZNF536 Missense_Mutation p.E727K 0.39 tolerated(0.06) benign(0.443) TCGA-F5-6863-01 19 55450603 55450603 C A NLRP7 Missense_Mutation p.E528D 0.41 deleterious(0.01) possibly_damaging(0.829) TCGA-F5-6863-01 19 58948451 58948451 A G ZNF132 Silent p.S65S 0.11 TCGA-F5-6863-01 19 8167759 8167759 T C FBN3 Splice_Site p.X1647_splice 0.12 TCGA-F5-6863-01 1 10725218 10725218 C G CASZ1 Missense_Mutation p.G143R 0.75 deleterious_low_confidence(0) benign(0.007) TCGA-F5-6863-01 1 114354751 114354751 C A RSBN1 Missense_Mutation p.G95V 0.29 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-F5-6863-01 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.77 deleterious(0) possibly_damaging(0.726) TCGA-F5-6863-01 1 152277485 152277485 G C FLG Missense_Mutation p.Q3293E 0.37 unknown(0) TCGA-F5-6863-01 1 153122538 153122538 C A SPRR2G Missense_Mutation p.V17L 0.25 unknown(0) TCGA-F5-6863-01 1 158725219 158725219 T C OR6K6 Missense_Mutation p.I205T 0.13 deleterious(0) probably_damaging(0.925) TCGA-F5-6863-01 1 198678923 198678923 G A PTPRC Missense_Mutation p.A381T 0.54 tolerated(0.56) benign(0) TCGA-F5-6863-01 1 228294427 228294427 T C MRPL55 3'UTR 0.09 TCGA-F5-6863-01 1 236205511 236205511 G A NID1 Silent p.D278D 0.38 TCGA-F5-6863-01 1 245850490 245850490 G A KIF26B Missense_Mutation p.R1402Q 0.52 tolerated(0.34) unknown(0) TCGA-F5-6863-01 1 246490519 246490519 A G SMYD3 Missense_Mutation p.F172S 0.56 tolerated(0.09) possibly_damaging(0.868) TCGA-F5-6863-01 1 29095444 29095444 C T YTHDF2 Missense_Mutation p.R574C 0.74 deleterious_low_confidence(0) benign(0.209) TCGA-F5-6863-01 1 6579593 6579593 C T NOL9 3'Flank 0.82 TCGA-F5-6863-01 20 50048607 50048607 C A NFATC2 Missense_Mutation p.D907Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-F5-6863-01 2 120439130 120439130 G T TMEM177 Missense_Mutation p.R234L 0.28 deleterious(0.01) possibly_damaging(0.806) TCGA-F5-6863-01 2 179432581 179432581 C T TTN Missense_Mutation p.G26093E 0.28 TCGA-F5-6863-01 2 179591984 179591984 C T TTN Missense_Mutation p.R6703Q 0.53 TCGA-F5-6863-01 2 179613737 179613737 C A TTN Intron 0.32 TCGA-F5-6863-01 2 179647040 179647040 C T TTN Silent p.L1093L 0.33 TCGA-F5-6863-01 2 43507035 43507035 T C THADA Missense_Mutation p.E1722G 0.08 tolerated(1) benign(0) TCGA-F5-6863-01 2 55077321 55077321 C T EML6 Silent p.D470D 0.49 TCGA-F5-6863-01 2 5836322 5836322 T C SOX11 3'UTR 0.31 TCGA-F5-6863-01 2 80529477 80529477 C T LRRTM1 Missense_Mutation p.V490I 0.45 tolerated(0.14) probably_damaging(0.959) TCGA-F5-6863-01 2 85043081 85043081 G A DNAH6 Missense_Mutation p.G4083R 0.54 tolerated(0.19) benign(0.258) TCGA-F5-6863-01 3 183885779 183885779 G C DVL3 Missense_Mutation p.G475A 0.57 deleterious(0) probably_damaging(0.999) TCGA-F5-6863-01 3 191087729 191087729 G C CCDC50 Missense_Mutation p.E118Q 0.34 tolerated(0.23) probably_damaging(0.999) TCGA-F5-6863-01 3 42739828 42739828 C T HHATL Missense_Mutation p.G167S 0.44 tolerated(0.27) probably_damaging(0.933) TCGA-F5-6863-01 3 50368988 50368988 A C RASSF1 Splice_Site p.X258_splice 0.40 TCGA-F5-6863-01 3 62385242 62385242 G A CADPS Nonsense_Mutation p.R1301* 0.33 TCGA-F5-6863-01 3 69928425 69928425 C T MITF Missense_Mutation p.A82V 0.33 tolerated(0.28) benign(0.434) TCGA-F5-6863-01 4 140291436 140291436 G T NAA15 Nonsense_Mutation p.E609* 0.37 TCGA-F5-6863-01 4 184241415 184241415 G A CLDN22 5'UTR 0.38 TCGA-F5-6863-01 4 20550145 20550145 A T SLIT2 Missense_Mutation p.N794Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-F5-6863-01 4 5969171 5969171 C T C4orf50 Missense_Mutation p.V617I 0.31 tolerated(0.19) benign(0.15) TCGA-F5-6863-01 4 76811194 76811194 G A PPEF2 Silent p.P111P 0.55 TCGA-F5-6863-01 4 88584463 88584463 C T DMP1 Silent p.D511D 0.64 TCGA-F5-6863-01 4 98893498 98893498 G T STPG2 Missense_Mutation p.S289Y 0.43 deleterious(0) probably_damaging(0.995) TCGA-F5-6863-01 5 112155042 112155042 G A APC Splice_Site p.X438_splice 0.28 TCGA-F5-6863-01 5 112175106 112175106 C G APC Nonsense_Mutation p.S1272* 0.37 TCGA-F5-6863-01 5 140802184 140802184 G A PCDHGA11 Missense_Mutation p.E464K 0.56 deleterious_low_confidence(0) probably_damaging(1) TCGA-F5-6863-01 5 167379674 167379674 C T TENM2 Missense_Mutation p.S265L 0.42 tolerated_low_confidence(0.2) benign(0.192) TCGA-F5-6863-01 5 39377196 39377196 T C DAB2 Missense_Mutation p.T565A 0.22 tolerated(0.63) benign(0.001) TCGA-F5-6863-01 5 50130792 50130792 A C PARP8 Missense_Mutation p.H802P 0.33 deleterious(0.05) probably_damaging(0.982) TCGA-F5-6863-01 5 96101828 96101829 - CTC CAST In_Frame_Ins p.L664dup 0.23 TCGA-F5-6863-01 6 150238141 150238141 G A RAET1G Silent p.D304D 0.53 TCGA-F5-6863-01 6 163987630 163987630 G C QKI Intron 0.27 TCGA-F5-6863-01 6 21597023 21597023 A G SOX4 3'UTR 0.27 TCGA-F5-6863-01 6 30917638 30917638 C T DPCR1 Missense_Mutation p.T466M 0.39 deleterious(0.04) probably_damaging(1) TCGA-F5-6863-01 6 31526099 31526099 C G NFKBIL1 Missense_Mutation p.P286R 0.29 tolerated(0.5) benign(0.265) TCGA-F5-6863-01 6 35051205 35051205 G A ANKS1A Silent p.E973E 0.33 TCGA-F5-6863-01 6 39328288 39328288 A G KIF6 Silent p.T655T 0.08 TCGA-F5-6863-01 7 110763591 110763591 G A LRRN3 Missense_Mutation p.A255T 0.13 deleterious(0) probably_damaging(0.996) TCGA-F5-6863-01 7 142562293 142562293 G A EPHB6 Silent p.T245T 0.29 TCGA-F5-6863-01 7 66290319 66290319 G A GTF2IRD1P1 RNA 0.25 TCGA-F5-6863-01 7 88964177 88964177 T C ZNF804B Silent p.F627F 0.41 TCGA-F5-6863-01 8 121275201 121275201 T A COL14A1 Nonsense_Mutation p.Y988* 0.19 TCGA-F5-6863-01 8 4277522 4277522 G A CSMD1 Missense_Mutation p.T123M 0.36 probably_damaging(0.995) TCGA-F5-6863-01 9 125652639 125652639 T C RC3H2 Missense_Mutation p.N179D 0.10 deleterious(0.03) probably_damaging(0.931) TCGA-F5-6863-01 9 131231581 131231581 T C ODF2 Silent p.Y123Y 0.36 TCGA-F5-6863-01 9 133768831 133768831 C T QRFP Missense_Mutation p.R132H 0.50 deleterious(0) probably_damaging(0.999) TCGA-F5-6863-01 9 35091249 35091249 C T PIGO Missense_Mutation p.V879I 0.40 tolerated(0.58) benign(0.001) TCGA-F5-6863-01 X 107977907 107977907 G A IRS4 Silent p.H556H 0.38 TCGA-F5-6863-01 X 16737783 16737783 C G SYAP1 5'UTR 0.27 TCGA-F5-6863-01 X 31090081 31090081 G A FTHL17 5'UTR 0.08 TCGA-F5-6863-01 X 31676188 31676188 C T DMD Missense_Mutation p.R2649Q 0.46 benign(0.417) TCGA-F5-6864-01 10 106974336 106974336 G A SORCS3 Missense_Mutation p.G838R 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-F5-6864-01 10 115338445 115338445 G A HABP2 Missense_Mutation p.V210I 0.26 tolerated(0.31) benign(0.02) TCGA-F5-6864-01 10 3202509 3202509 C T PITRM1 Missense_Mutation p.G269S 0.34 deleterious(0) probably_damaging(1) TCGA-F5-6864-01 10 32863418 32863418 G T C10ORF68 Intron 0.14 TCGA-F5-6864-01 10 43977171 43977171 G A ZNF487 Missense_Mutation p.R143H 0.27 tolerated(1) benign(0.002) TCGA-F5-6864-01 10 49687765 49687765 G A ARHGAP22 Missense_Mutation p.A122V 0.17 deleterious(0.01) benign(0.269) TCGA-F5-6864-01 10 50004350 50004350 C T WDFY4 Missense_Mutation p.A1422V 0.23 deleterious(0.01) benign(0.135) TCGA-F5-6864-01 10 70161415 70161415 C G RUFY2 Missense_Mutation p.E121D 0.45 deleterious(0.05) benign(0.037) TCGA-F5-6864-01 10 82180228 82180228 C G FAM213A Missense_Mutation p.S2C 0.39 deleterious_low_confidence(0.02) possibly_damaging(0.759) TCGA-F5-6864-01 11 107488877 107488877 G T ELMOD1 5'UTR 0.29 TCGA-F5-6864-01 11 12234929 12234929 A T MICAL2 Missense_Mutation p.K273N 0.13 deleterious(0) probably_damaging(0.997) TCGA-F5-6864-01 11 123811079 123811079 G A OR4D5 Silent p.V252V 0.09 TCGA-F5-6864-01 11 1268507 1268507 C T MUC5B Missense_Mutation p.T3466M 0.30 unknown(0) TCGA-F5-6864-01 11 1774740 1774740 C T CTSD Missense_Mutation p.R411H 0.38 tolerated(0.06) benign(0.35) TCGA-F5-6864-01 11 2337527 2337527 C T TSPAN32 Silent p.I204I 0.21 TCGA-F5-6864-01 11 290894 290894 G A ATHL1 Silent p.T229T 0.14 TCGA-F5-6864-01 11 55872826 55872826 T G OR8H2 Missense_Mutation p.F103C 0.22 deleterious(0.05) benign(0.03) TCGA-F5-6864-01 11 55890162 55890162 T C OR8H3 Missense_Mutation p.V105A 0.11 tolerated(0.13) benign(0.002) TCGA-F5-6864-01 11 64056664 64056664 C T GPR137 Missense_Mutation p.R419C 0.27 deleterious_low_confidence(0.01) benign(0.09) TCGA-F5-6864-01 11 64416251 64416251 C T NRXN2 Missense_Mutation p.A1080T 0.38 tolerated(0.28) probably_damaging(0.997) TCGA-F5-6864-01 11 65375494 65375494 C T MAP3K11 Missense_Mutation p.R323H 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-F5-6864-01 11 8479011 8479011 T C STK33 Missense_Mutation p.M192V 0.09 deleterious(0.01) possibly_damaging(0.731) TCGA-F5-6864-01 12 122723193 122723193 C T VPS33A Missense_Mutation p.V415M 0.47 tolerated(0.07) benign(0.105) TCGA-F5-6864-01 12 48723154 48723154 G T H1FNT Missense_Mutation p.G27V 0.08 tolerated(0.06) possibly_damaging(0.537) TCGA-F5-6864-01 12 52312829 52312829 A G ACVRL1 Missense_Mutation p.E436G 0.11 deleterious(0) probably_damaging(0.993) TCGA-F5-6864-01 12 52881314 52881314 T C KRT6A 3'UTR 0.60 TCGA-F5-6864-01 12 56437919 56437919 C T RPS26 Missense_Mutation p.P110L 0.29 deleterious(0.02) unknown(0) TCGA-F5-6864-01 12 62895463 62895463 G A MON2 Silent p.P258P 0.36 TCGA-F5-6864-01 12 8212197 8212197 C A C3AR1 Missense_Mutation p.R195S 0.25 tolerated(0.69) benign(0.021) TCGA-F5-6864-01 12 88478479 88478479 T C CEP290 Missense_Mutation p.K1530E 0.33 benign(0.001) TCGA-F5-6864-01 12 93803448 93803452 AAAAT - UBE2N 3'UTR 0.30 TCGA-F5-6864-01 13 109793636 109793636 C T MYO16 Silent p.S1670S 0.31 TCGA-F5-6864-01 13 113798330 113798330 C T F10 Missense_Mutation p.T223M 0.40 deleterious(0.01) probably_damaging(0.911) TCGA-F5-6864-01 13 29600872 29600872 C A MTUS2 Silent p.P689P 0.20 TCGA-F5-6864-01 13 32526962 32526962 C T EEF1DP3 RNA 0.26 TCGA-F5-6864-01 13 32753134 32753134 G A FRY Silent p.A945A 0.06 TCGA-F5-6864-01 13 41400646 41400646 G C TPTE2P5 RNA 0.09 TCGA-F5-6864-01 13 73636648 73636648 C T KLF5 Missense_Mutation p.P304L 0.65 deleterious(0) probably_damaging(0.981) TCGA-F5-6864-01 14 23859424 23859424 C T MYH6 Missense_Mutation p.A1192T 0.27 deleterious(0.02) benign(0.073) TCGA-F5-6864-01 14 52505473 52505473 G A NID2 Missense_Mutation p.P750L 0.22 deleterious(0.02) probably_damaging(0.97) TCGA-F5-6864-01 14 64469789 64469789 T C SYNE2 Missense_Mutation p.C1380R 0.29 benign(0) TCGA-F5-6864-01 14 71197353 71197353 G T MAP3K9 Missense_Mutation p.P1034Q 0.33 deleterious(0.03) probably_damaging(0.923) TCGA-F5-6864-01 14 74035940 74035940 A C ACOT2 5'UTR 0.30 TCGA-F5-6864-01 14 81743366 81743366 A - STON2 Frame_Shift_Del p.F763Lfs*13 0.27 TCGA-F5-6864-01 14 94545406 94545406 C T DDX24 Missense_Mutation p.R228H 0.36 tolerated(0.08) possibly_damaging(0.741) TCGA-F5-6864-01 15 20488798 20488798 G T CHEK2P2 RNA 0.08 TCGA-F5-6864-01 15 23811177 23811177 G T MKRN3 Missense_Mutation p.W83L 0.29 tolerated(0.68) benign(0) TCGA-F5-6864-01 15 25924816 25924816 G A ATP10A Missense_Mutation p.P1391L 0.32 tolerated_low_confidence(0.16) benign(0.001) TCGA-F5-6864-01 15 25972338 25972338 C T ATP10A Silent p.T272T 0.09 TCGA-F5-6864-01 15 27018820 27018820 G C GABRB3 5'Flank 0.18 TCGA-F5-6864-01 15 35086935 35086935 G A ACTC1 Silent p.G25G 0.13 TCGA-F5-6864-01 15 45456989 45456989 G A DUOX1 Missense_Mutation p.G1516R 0.33 deleterious(0) probably_damaging(1) TCGA-F5-6864-01 15 67457397 67457397 C T SMAD3 Missense_Mutation p.P124L 0.33 deleterious(0) probably_damaging(0.929) TCGA-F5-6864-01 15 73617639 73617639 C T HCN4 Silent p.E579E 0.20 TCGA-F5-6864-01 15 78632767 78632767 C T CRABP1 5'UTR 0.10 TCGA-F5-6864-01 15 89422214 89422214 G A HAPLN3 Silent p.F260F 0.23 TCGA-F5-6864-01 15 92988152 92988152 G A ST8SIA2 Missense_Mutation p.V279I 0.30 benign(0.129) TCGA-F5-6864-01 15 99671515 99671515 G A SYNM Missense_Mutation p.V983M 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-F5-6864-01 16 12450087 12450087 A T SNX29 Missense_Mutation p.E617V 0.33 deleterious(0) possibly_damaging(0.541) TCGA-F5-6864-01 16 20681148 20681148 C T ACSM1 Splice_Site p.X304_splice 0.14 TCGA-F5-6864-01 16 2114383 2114383 C A TSC2 Silent p.G518G 0.36 TCGA-F5-6864-01 16 29809805 29809805 A G KIF22 Missense_Mutation p.Y126C 0.36 deleterious(0) probably_damaging(1) TCGA-F5-6864-01 16 30795121 30795121 C T ZNF629 Silent p.R176R 0.28 TCGA-F5-6864-01 16 31500446 31500446 C T SLC5A2 Silent p.G484G 0.26 TCGA-F5-6864-01 16 57732004 57732004 C T CCDC135 Missense_Mutation p.T48M 0.18 tolerated(0.11) benign(0.003) TCGA-F5-6864-01 16 67917775 67917775 T C EDC4 Intron 0.15 TCGA-F5-6864-01 16 85813406 85813406 C T EMC8 Missense_Mutation p.E181K 0.29 tolerated(0.22) possibly_damaging(0.73) TCGA-F5-6864-01 17 11650990 11650990 C T DNAH9 Missense_Mutation p.R2173W 0.15 possibly_damaging(0.773) TCGA-F5-6864-01 17 39261761 39261761 C T KRTAP4-9 Missense_Mutation p.R41C 0.26 deleterious(0.01) unknown(0) TCGA-F5-6864-01 17 39383282 39383282 G A KRTAP9-2 Missense_Mutation p.V126I 0.08 tolerated(0.05) probably_damaging(0.975) TCGA-F5-6864-01 17 41365203 41365203 G C TMEM106A Missense_Mutation p.C48S 0.28 tolerated(0.21) benign(0.345) TCGA-F5-6864-01 17 66525038 66525038 C A PRKAR1A Missense_Mutation p.T266K 0.34 tolerated(0.09) benign(0.006) TCGA-F5-6864-01 17 72589089 72589089 C T C17orf77 3'UTR 0.34 TCGA-F5-6864-01 17 73257639 73257639 C T GGA3 Silent p.E10E 0.43 TCGA-F5-6864-01 17 7578419 7578419 C A TP53 Nonsense_Mutation p.E171* 0.41 TCGA-F5-6864-01 17 76399895 76399895 C T PGS1 Missense_Mutation p.A376V 0.15 tolerated(0.11) benign(0.062) TCGA-F5-6864-01 17 79852410 79852410 C T ANAPC11 Silent p.N19N 0.33 TCGA-F5-6864-01 17 80053330 80053330 C T FASN Missense_Mutation p.R49Q 0.20 tolerated(0.07) benign(0.317) TCGA-F5-6864-01 18 48604789 48604789 C G SMAD4 Missense_Mutation p.D537E 0.23 deleterious(0) probably_damaging(1) TCGA-F5-6864-01 19 11130337 11130337 C T SMARCA4 Missense_Mutation p.T859M 0.61 probably_damaging(1) TCGA-F5-6864-01 19 1632093 1632093 A G TCF3 Missense_Mutation p.F81S 0.08 deleterious(0.01) possibly_damaging(0.461) TCGA-F5-6864-01 19 1990012 1990012 A G BTBD2 Missense_Mutation p.F327L 0.10 deleterious(0.02) benign(0.346) TCGA-F5-6864-01 19 20727780 20727780 G T ZNF737 Missense_Mutation p.S410Y 0.32 deleterious(0.02) unknown(0) TCGA-F5-6864-01 19 34699944 34699944 C A LSM14A Missense_Mutation p.Q176K 0.35 tolerated(0.06) benign(0.021) TCGA-F5-6864-01 19 37005197 37005197 C T ZNF260 Missense_Mutation p.R315Q 0.26 tolerated(1) benign(0.01) TCGA-F5-6864-01 19 37903587 37903587 C T ZNF569 Missense_Mutation p.G658D 0.18 deleterious(0.01) probably_damaging(1) TCGA-F5-6864-01 19 38379198 38379198 C A WDR87 Missense_Mutation p.A1666S 0.33 possibly_damaging(0.787) TCGA-F5-6864-01 19 38924405 38924405 G A RYR1 5'Flank 0.77 TCGA-F5-6864-01 19 39027407 39027407 G A RYR1 Missense_Mutation p.G3870R 0.35 benign(0) TCGA-F5-6864-01 19 4282901 4282901 A G SHD Missense_Mutation p.D111G 0.26 deleterious(0) possibly_damaging(0.878) TCGA-F5-6864-01 19 49217211 49217211 G C MAMSTR Missense_Mutation p.P272R 0.58 tolerated(0.08) possibly_damaging(0.804) TCGA-F5-6864-01 19 56047629 56047629 C T SBK2 Silent p.A11A 0.22 TCGA-F5-6864-01 19 57327145 57327145 G A PEG3 Missense_Mutation p.R889C 0.11 tolerated(0.08) benign(0.39) TCGA-F5-6864-01 19 9581132 9581132 G A ZNF560 Silent p.D128D 0.30 TCGA-F5-6864-01 1 110255875 110255875 C G GSTM5 Intron 0.16 TCGA-F5-6864-01 1 142804465 142804465 G A RP11-423O2.5 RNA 0.29 TCGA-F5-6864-01 1 157522236 157522236 G A FCRL5 5'UTR 0.29 TCGA-F5-6864-01 1 175956140 175956140 C T RFWD2 Missense_Mutation p.R691Q 0.09 tolerated(0.3) benign(0.002) TCGA-F5-6864-01 1 20072087 20072087 G A TMCO4 Missense_Mutation p.T272M 0.50 deleterious(0) probably_damaging(0.932) TCGA-F5-6864-01 1 233482260 233482260 C T MLK4 Missense_Mutation p.A293V 0.31 deleterious(0) probably_damaging(1) TCGA-F5-6864-01 1 3649574 3649574 C T TP73 Silent p.F614F 0.61 TCGA-F5-6864-01 1 39784191 39784191 C G MACF1 Missense_Mutation p.I1288M 0.22 possibly_damaging(0.901) TCGA-F5-6864-01 1 43903566 43903566 G A SZT2 Silent p.G2110G 0.29 TCGA-F5-6864-01 1 65867488 65867488 G A DNAJC6 Missense_Mutation p.G718R 0.26 tolerated(0.17) probably_damaging(0.966) TCGA-F5-6864-01 1 78099026 78099026 C T ZZZ3 Missense_Mutation p.R5Q 0.10 deleterious(0) probably_damaging(0.997) TCGA-F5-6864-01 1 91818659 91818659 C A HFM1 Missense_Mutation p.D594Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-F5-6864-01 1 99772460 99772460 G A LPPR4 Missense_Mutation p.R729Q 0.62 tolerated(0.14) benign(0.084) TCGA-F5-6864-01 20 44596232 44596232 G A ZNF335 Missense_Mutation p.R286W 0.06 deleterious(0) possibly_damaging(0.677) TCGA-F5-6864-01 20 60963528 60963528 G A RPS21 3'UTR 0.06 TCGA-F5-6864-01 21 27137050 27137050 G A GABPA Missense_Mutation p.R363H 0.30 deleterious(0.01) benign(0.345) TCGA-F5-6864-01 21 39087139 39087139 A - KCNJ6 Frame_Shift_Del p.F107Lfs*3 0.27 TCGA-F5-6864-01 21 45553580 45553580 A G C21orf33 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) unknown(0) TCGA-F5-6864-01 22 19903310 19903310 C T TXNRD2 Missense_Mutation p.G169D 0.26 tolerated(0.05) probably_damaging(0.917) TCGA-F5-6864-01 22 24057198 24057198 C T KB-1572G7.2 Intron 0.24 TCGA-F5-6864-01 22 26689087 26689087 G A SEZ6L Silent p.T270T 0.42 TCGA-F5-6864-01 22 32200870 32200870 G A DEPDC5 Missense_Mutation p.D396N 0.29 deleterious(0) benign(0.26) TCGA-F5-6864-01 22 32756421 32756421 G A RFPL3 Missense_Mutation p.V186M 0.36 tolerated(0.18) benign(0.247) TCGA-F5-6864-01 22 45828244 45828244 G A RIBC2 3'UTR 0.31 TCGA-F5-6864-01 22 46794447 46794447 G A CELSR1 Missense_Mutation p.R1834C 0.37 deleterious(0.04) possibly_damaging(0.892) TCGA-F5-6864-01 22 51160702 51160702 C A SHANK3 Silent p.R1497R 0.27 TCGA-F5-6864-01 2 109524430 109524430 G A EDAR Silent p.S283S 0.08 TCGA-F5-6864-01 2 145156488 145156488 G A ZEB2 Missense_Mutation p.P756S 0.36 tolerated(1) benign(0.002) TCGA-F5-6864-01 2 1507739 1507739 C A TPO Missense_Mutation p.D802E 0.33 tolerated(0.12) possibly_damaging(0.619) TCGA-F5-6864-01 2 179438659 179438659 C A TTN Missense_Mutation p.G24067V 0.34 TCGA-F5-6864-01 2 179482074 179482074 A T TTN Missense_Mutation p.L15913H 0.32 TCGA-F5-6864-01 2 179582007 179582007 A T TTN Missense_Mutation p.I8485N 0.26 TCGA-F5-6864-01 2 182400376 182400376 C T ITGA4 3'UTR 0.18 TCGA-F5-6864-01 2 196661389 196661389 C A DNAH7 Nonsense_Mutation p.E3476* 0.20 TCGA-F5-6864-01 2 198051803 198051803 C T ANKRD44 Missense_Mutation p.G19S 0.21 tolerated(0.12) probably_damaging(0.987) TCGA-F5-6864-01 2 20153616 20153616 G T WDR35 Missense_Mutation p.S471Y 0.14 deleterious(0.01) benign(0.429) TCGA-F5-6864-01 2 220496719 220496719 C T SLC4A3 Missense_Mutation p.R308W 0.29 deleterious(0) probably_damaging(0.998) TCGA-F5-6864-01 2 234750463 234750463 C T HJURP Silent p.K321K 0.32 TCGA-F5-6864-01 2 238726879 238726879 G C RBM44 Missense_Mutation p.K440N 0.33 tolerated(1) benign(0.004) TCGA-F5-6864-01 2 27307330 27307330 C T EMILIN1 Missense_Mutation p.P830S 0.38 possibly_damaging(0.835) TCGA-F5-6864-01 2 31189097 31189097 C T GALNT14 Missense_Mutation p.R129H 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-F5-6864-01 2 60688057 60688057 C T BCL11A Missense_Mutation p.A664T 0.38 deleterious(0.01) possibly_damaging(0.499) TCGA-F5-6864-01 3 119338486 119338486 T C PLA1A Silent p.S333S 0.19 TCGA-F5-6864-01 3 14561971 14561971 C T GRIP2 RNA 0.06 TCGA-F5-6864-01 3 25833095 25833095 G A OXSM Missense_Mutation p.R195Q 0.48 tolerated(0.06) benign(0.066) TCGA-F5-6864-01 3 2928747 2928747 G A CNTN4 Missense_Mutation p.R260Q 0.53 deleterious(0) probably_damaging(0.92) TCGA-F5-6864-01 3 51989764 51989764 C T GPR62 Silent p.N32N 0.67 TCGA-F5-6864-01 3 9406890 9406890 T A THUMPD3 Silent p.T46T 0.26 TCGA-F5-6864-01 3 95374183 95374183 G C MTHFD2P1 RNA 0.83 TCGA-F5-6864-01 4 126412333 126412333 G A FAT4 Missense_Mutation p.G4786R 0.33 probably_damaging(1) TCGA-F5-6864-01 4 153692591 153692591 C T TIGD4 5'UTR 0.25 TCGA-F5-6864-01 4 38798195 38798195 C A TLR1 Missense_Mutation p.R753M 0.28 deleterious(0) possibly_damaging(0.891) TCGA-F5-6864-01 4 39117029 39117029 T C KLHL5 Intron 0.08 TCGA-F5-6864-01 4 81188013 81188013 G A FGF5 Missense_Mutation p.S12N 0.19 tolerated_low_confidence(0.13) unknown(0) TCGA-F5-6864-01 4 85694026 85694026 A G WDFY3 Missense_Mutation p.V1604A 0.34 deleterious(0.01) benign(0.032) TCGA-F5-6864-01 4 89198310 89198310 G A PPM1K Missense_Mutation p.R176C 0.25 tolerated(0.21) benign(0.001) TCGA-F5-6864-01 5 112175390 112175390 C T APC Nonsense_Mutation p.Q1367* 0.54 TCGA-F5-6864-01 5 177634161 177634161 T - HNRNPAB Frame_Shift_Del p.F202Lfs*7 0.22 TCGA-F5-6864-01 5 33596160 33596160 G A ADAMTS12 Missense_Mutation p.R845C 0.22 deleterious(0) probably_damaging(0.954) TCGA-F5-6864-01 5 40716207 40716207 A G TTC33 3'UTR 0.13 TCGA-F5-6864-01 5 55147430 55147430 C T IL31RA Missense_Mutation p.T11M 0.24 tolerated_low_confidence(0.06) probably_damaging(0.968) TCGA-F5-6864-01 5 66432404 66432404 G T MAST4 Missense_Mutation p.W802C 0.10 probably_damaging(0.998) TCGA-F5-6864-01 5 71752252 71752252 G A ZNF366 Silent p.D501D 0.13 TCGA-F5-6864-01 5 77072052 77072052 C G TBCA Missense_Mutation p.K10N 0.47 deleterious(0.02) probably_damaging(0.962) TCGA-F5-6864-01 5 82835030 82835030 A G VCAN Missense_Mutation p.K2070E 0.24 tolerated(1) benign(0.001) TCGA-F5-6864-01 5 93732205 93732205 C A KIAA0825 Missense_Mutation p.R966M 0.10 deleterious(0) possibly_damaging(0.792) TCGA-F5-6864-01 6 117710674 117710674 T G ROS1 Missense_Mutation p.D533A 0.35 tolerated(0.22) benign(0.419) TCGA-F5-6864-01 6 146350970 146350970 G A GRM1 Missense_Mutation p.R106Q 0.22 deleterious(0) probably_damaging(0.999) TCGA-F5-6864-01 6 28541547 28541547 G T SCAND3 Missense_Mutation p.H707N 0.17 tolerated_low_confidence(0.06) benign(0.004) TCGA-F5-6864-01 6 33703163 33703163 C T IP6K3 Missense_Mutation p.V31M 0.20 tolerated(0.69) benign(0.034) TCGA-F5-6864-01 6 83845561 83845561 G A DOPEY1 Missense_Mutation p.D1032N 0.19 tolerated(0.2) benign(0.024) TCGA-F5-6864-01 6 96651752 96651752 T C FUT9 Missense_Mutation p.Y241H 0.14 deleterious(0) probably_damaging(1) TCGA-F5-6864-01 7 111575673 111575673 C G DOCK4 Missense_Mutation p.E330Q 0.25 deleterious(0) probably_damaging(0.957) TCGA-F5-6864-01 7 121741422 121741422 T C AASS Intron 0.36 TCGA-F5-6864-01 7 1784619 1784619 C T ELFN1 Silent p.R129R 0.25 TCGA-F5-6864-01 7 45743035 45743035 A G ADCY1 Missense_Mutation p.N839D 0.17 deleterious(0) probably_damaging(0.999) TCGA-F5-6864-01 7 56007632 56007632 G T ZNF713 Missense_Mutation p.R409L 0.56 tolerated(0.05) benign(0.261) TCGA-F5-6864-01 7 75915087 75915087 G A SRRM3 3'UTR 0.10 TCGA-F5-6864-01 7 82585501 82585501 C - PCLO Frame_Shift_Del p.E1590Rfs*14 0.24 TCGA-F5-6864-01 7 82996937 82996937 G T SEMA3E Missense_Mutation p.H765N 0.52 tolerated(0.09) benign(0.094) TCGA-F5-6864-01 8 110456059 110456059 G A PKHD1L1 Silent p.P1573P 0.08 TCGA-F5-6864-01 8 11660315 11660315 G T FDFT1 5'UTR 0.44 TCGA-F5-6864-01 8 139153542 139153542 C T FAM135B Missense_Mutation p.R1230Q 0.39 deleterious(0) probably_damaging(0.987) TCGA-F5-6864-01 8 142195320 142195320 C G DENND3 Missense_Mutation p.F929L 0.12 deleterious(0.01) benign(0.399) TCGA-F5-6864-01 8 145724400 145724400 G A PPP1R16A Silent p.A144A 0.52 TCGA-F5-6864-01 8 55055253 55055253 A G MRPL15 Missense_Mutation p.I154V 0.35 deleterious(0.02) possibly_damaging(0.777) TCGA-F5-6864-01 8 92147912 92147912 A G LRRC69 Missense_Mutation p.K199R 0.16 tolerated(0.51) benign(0.008) TCGA-F5-6864-01 8 98863687 98863687 T G LAPTM4B Silent p.P313P 0.12 TCGA-F5-6864-01 9 115805204 115805204 C A ZFP37 Missense_Mutation p.R565I 0.35 deleterious(0) probably_damaging(0.996) TCGA-F5-6864-01 9 19450753 19450753 A G ACER2 3'UTR 0.52 TCGA-F5-6864-01 9 34520703 34520703 G A DNAI1 Silent p.A683A 0.34 TCGA-F5-6864-01 9 40774481 40774481 G T ZNF658 Missense_Mutation p.T265K 0.43 tolerated(0.2) benign(0.102) TCGA-F5-6864-01 9 40774511 40774511 A G ZNF658 Missense_Mutation p.I255T 0.49 tolerated(0.92) benign(0) TCGA-F5-6864-01 9 5563200 5563200 G A PDCD1LG2 Missense_Mutation p.V269M 0.04 tolerated(0.08) possibly_damaging(0.87) TCGA-F5-6864-01 X 114424852 114424852 G A RBMXL3 Missense_Mutation p.G283D 0.19 deleterious_low_confidence(0.02) probably_damaging(0.946) TCGA-F5-6864-01 X 23411706 23411706 C G PTCHD1 Missense_Mutation p.R691G 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-F5-6864-01 X 26212609 26212610 - T MAGEB6 Frame_Shift_Ins p.L217Ffs*35 0.30 TCGA-F5-6864-01 X 54841908 54841908 A G MAGED2 Silent p.K538K 0.09 TCGA-F5-6864-01 X 72347268 72347268 C T NAP1L6 3'UTR 0.14 TCGA-F5-6864-01 X 91132744 91132744 A G PCDH11X Missense_Mutation p.N502S 0.50 tolerated(0.71) benign(0.004) TCGA-G5-6233-01 10 102796912 102796912 A G SFXN3 Missense_Mutation p.I229V 0.21 tolerated(0.06) benign(0.203) TCGA-G5-6233-01 10 124008234 124008234 C T TACC2 Silent p.A2823A 0.38 TCGA-G5-6233-01 10 3202499 3202499 G A PITRM1 Missense_Mutation p.P272L 0.25 deleterious(0) possibly_damaging(0.853) TCGA-G5-6233-01 10 55581804 55581804 T - PCDH15 Frame_Shift_Del p.K1896Nfs*3 0.22 TCGA-G5-6233-01 10 56077135 56077135 C T PCDH15 Missense_Mutation p.G258R 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-G5-6233-01 10 72293804 72293804 C T PALD1 Missense_Mutation p.R333C 0.20 tolerated(0.19) benign(0.005) TCGA-G5-6233-01 10 88679138 88679138 C G BMPR1A Missense_Mutation p.H360D 0.37 deleterious(0) probably_damaging(0.969) TCGA-G5-6233-01 10 96702221 96702221 A G CYP2C9 Intron 0.12 TCGA-G5-6233-01 11 103039566 103039566 A C DYNC2H1 Missense_Mutation p.Q1615H 0.66 benign(0.004) TCGA-G5-6233-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.53 deleterious(0) probably_damaging(0.999) TCGA-G5-6233-01 11 125660541 125660541 T A PATE3 3'UTR 0.62 TCGA-G5-6233-01 11 126176498 126176498 G T DCPS Missense_Mutation p.D79Y 0.63 deleterious(0) benign(0.324) TCGA-G5-6233-01 11 30034089 30034089 G A KCNA4 Missense_Mutation p.A46V 0.58 deleterious_low_confidence(0.04) unknown(0) TCGA-G5-6233-01 11 4091278 4091278 G A STIM1 Silent p.K212K 0.17 TCGA-G5-6233-01 11 55032535 55032535 C A TRIM48 Nonsense_Mutation p.C68* 0.09 TCGA-G5-6233-01 11 55587999 55587999 C A OR5D18 Silent p.V298V 0.60 TCGA-G5-6233-01 11 58979635 58979635 G A MPEG1 Missense_Mutation p.A235V 0.09 deleterious(0.02) benign(0.056) TCGA-G5-6233-01 11 62295125 62295125 C A AHNAK Missense_Mutation p.G2255V 0.67 probably_damaging(0.969) TCGA-G5-6233-01 11 6231679 6231679 C G C11orf42 Missense_Mutation p.N224K 0.38 tolerated(1) benign(0.003) TCGA-G5-6233-01 11 66618183 66618183 G T PC Missense_Mutation p.A812D 0.65 deleterious(0) probably_damaging(0.974) TCGA-G5-6233-01 11 68125269 68125269 G A LRP5 Missense_Mutation p.A214T 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-G5-6233-01 11 759027 759027 C T TALDO1 Missense_Mutation p.P100L 0.10 deleterious(0.04) possibly_damaging(0.509) TCGA-G5-6233-01 11 76901743 76901743 C T MYO7A Missense_Mutation p.A1251V 0.61 deleterious(0.01) possibly_damaging(0.615) TCGA-G5-6233-01 11 85445448 85445448 A C SYTL2 Missense_Mutation p.H307Q 0.08 tolerated(0.29) probably_damaging(0.997) TCGA-G5-6233-01 12 117691508 117691508 T - NOS1 Frame_Shift_Del p.K895Nfs*22 0.48 TCGA-G5-6233-01 12 1940492 1940492 C T LRTM2 Silent p.A153A 0.41 TCGA-G5-6233-01 12 21790010 21790010 C AA LDHB Frame_Shift_Ins p.V278Ffs*8 0.13 TCGA-G5-6233-01 12 21918972 21918972 C A KCNJ8 Missense_Mutation p.W320C 0.48 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.39 deleterious(0) possibly_damaging(0.479) TCGA-G5-6233-01 12 25398285 25398285 C A KRAS Missense_Mutation p.G12C 0.39 deleterious(0.04) probably_damaging(0.993) TCGA-G5-6233-01 12 41331420 41331420 G A CNTN1 Missense_Mutation p.G387R 0.30 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 12 41966848 41966848 C G PDZRN4 Missense_Mutation p.P756R 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-G5-6233-01 12 48095362 48095362 T C RPAP3 Missense_Mutation p.N60S 0.35 tolerated(0.46) benign(0.003) TCGA-G5-6233-01 12 48371146 48371146 C T COL2A1 Missense_Mutation p.G1077D 0.36 unknown(0) TCGA-G5-6233-01 12 4921211 4921211 G A KCNA6 3'UTR 0.30 TCGA-G5-6233-01 12 54379252 54379252 C T HOXC10 Missense_Mutation p.P70L 0.34 deleterious(0) benign(0.153) TCGA-G5-6233-01 12 54798534 54798534 C T ITGA5 Missense_Mutation p.G457D 0.34 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 12 54975757 54975757 T A PPP1R1A Intron 0.38 TCGA-G5-6233-01 12 56642000 56642000 G A ANKRD52 Silent p.N595N 0.40 TCGA-G5-6233-01 12 57910251 57910251 G T MARS Missense_Mutation p.A864S 0.48 tolerated(0.12) possibly_damaging(0.673) TCGA-G5-6233-01 12 62949959 62949959 G T MON2 Missense_Mutation p.L1132F 0.08 tolerated(0.06) benign(0.29) TCGA-G5-6233-01 12 6670114 6670114 C T NOP2 Missense_Mutation p.G477R 0.45 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 12 68619413 68619413 C A IL26 Missense_Mutation p.V42F 0.55 deleterious(0.01) probably_damaging(0.919) TCGA-G5-6233-01 13 103384340 103384340 T C CCDC168 Missense_Mutation p.K1607R 0.61 tolerated(0.15) unknown(0) TCGA-G5-6233-01 13 23894839 23894839 C T SGCG Silent p.H214H 0.57 TCGA-G5-6233-01 13 23904661 23904661 T G SACS Silent p.R4452R 0.23 TCGA-G5-6233-01 13 25484087 25484087 T C CENPJ Missense_Mutation p.I236V 0.62 tolerated(0.89) benign(0.002) TCGA-G5-6233-01 13 35733753 35733753 G C NBEA Missense_Mutation p.D1149H 0.53 tolerated_low_confidence(0.06) benign(0.005) TCGA-G5-6233-01 13 42780174 42780174 G A DGKH Splice_Site p.X832_splice 0.14 TCGA-G5-6233-01 13 46161305 46161305 G A FAM194B Missense_Mutation p.T250I 0.16 tolerated(0.2) benign(0.059) TCGA-G5-6233-01 13 84454119 84454119 G T SLITRK1 Nonsense_Mutation p.Y508* 0.06 TCGA-G5-6233-01 14 106667783 106667783 T G IGHV3-20 Missense_Mutation p.D50A 0.14 deleterious_low_confidence(0.02) benign(0.009) TCGA-G5-6233-01 14 24608280 24608280 T A EMC9 Missense_Mutation p.Q189L 0.61 tolerated(0.1) possibly_damaging(0.903) TCGA-G5-6233-01 14 50100183 50100183 G A DNAAF2 Missense_Mutation p.S562F 0.50 tolerated(0.06) benign(0.066) TCGA-G5-6233-01 14 70990223 70990223 C G ADAM20 Missense_Mutation p.G468R 0.47 deleterious(0.01) probably_damaging(0.925) TCGA-G5-6233-01 15 23890895 23890895 G A MAGEL2 Silent p.P62P 0.74 TCGA-G5-6233-01 15 24926040 24926040 G A NPAP1 3'UTR 0.12 TCGA-G5-6233-01 15 30659651 30659651 G A CHRFAM7A Silent p.H230H 0.29 TCGA-G5-6233-01 15 42117455 42117455 C A MAPKBP1 Missense_Mutation p.L1456I 0.18 tolerated(0.52) benign(0.284) TCGA-G5-6233-01 15 43627237 43627237 T G ADAL 5'UTR 0.17 TCGA-G5-6233-01 15 76463342 76463342 C T C15orf27 Silent p.D174D 0.30 TCGA-G5-6233-01 15 77046246 77046246 C T SCAPER Missense_Mutation p.R590Q 0.60 tolerated(0.15) probably_damaging(0.981) TCGA-G5-6233-01 16 2012627 2012627 G A RPS2 Missense_Mutation p.R194C 0.46 tolerated(0.19) probably_damaging(0.961) TCGA-G5-6233-01 16 29913063 29913063 A T ASPHD1 Silent p.A257A 0.46 TCGA-G5-6233-01 16 68264856 68264856 G T ESRP2 Missense_Mutation p.P596T 0.36 tolerated(0.07) benign(0.318) TCGA-G5-6233-01 16 77401493 77401493 T A ADAMTS18 Missense_Mutation p.E208V 0.50 tolerated(0.06) benign(0.097) TCGA-G5-6233-01 16 84228722 84228722 G A ADAD2 Missense_Mutation p.G291S 0.16 tolerated(0.16) benign(0.248) TCGA-G5-6233-01 17 25937157 25937157 G A KSR1 Missense_Mutation p.E649K 0.10 tolerated(0.63) benign(0.183) TCGA-G5-6233-01 17 34499260 34499260 C T TBC1D3B Missense_Mutation p.G151R 0.10 tolerated(1) benign(0.006) TCGA-G5-6233-01 17 34803368 34803368 C T TBC1D3G Missense_Mutation p.G151R 0.17 tolerated(1) benign(0.006) TCGA-G5-6233-01 17 3593723 3593723 C T P2RX5 Silent p.P177P 0.48 TCGA-G5-6233-01 17 39296318 39296318 C T KRTAP4-6 Missense_Mutation p.R141H 0.34 tolerated(0.06) unknown(0) TCGA-G5-6233-01 17 39503433 39503433 G A KRT33A Silent p.N210N 0.55 TCGA-G5-6233-01 17 62893356 62893356 G A LRRC37A3 Missense_Mutation p.P7L 0.14 tolerated_low_confidence(0.24) benign(0.007) TCGA-G5-6233-01 17 7579316 7579317 - AA TP53 Frame_Shift_Ins p.C124Ffs*47 0.43 TCGA-G5-6233-01 17 76968097 76968098 - C LGALS3BP Frame_Shift_Ins p.V440Gfs*6 0.22 TCGA-G5-6233-01 17 9631698 9631698 G C USP43 Missense_Mutation p.Q921H 0.80 tolerated(0.08) benign(0.046) TCGA-G5-6233-01 18 18629141 18629141 T A ROCK1 Missense_Mutation p.K109I 0.59 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 18 24496351 24496351 C T CHST9 Missense_Mutation p.D402N 0.56 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 18 44221946 44221946 T G LOXHD1 Missense_Mutation p.N100T 0.11 tolerated(0.69) possibly_damaging(0.859) TCGA-G5-6233-01 18 48591889 48591894 ATGGAT - SMAD4 In_Frame_Del p.G352_Y353del 0.44 TCGA-G5-6233-01 18 66564572 66564572 G T CCDC102B Missense_Mutation p.M390I 0.51 tolerated(0.76) benign(0.034) TCGA-G5-6233-01 19 17756511 17756511 G A UNC13A Silent p.S776S 0.51 TCGA-G5-6233-01 19 19905752 19905752 C A ZNF506 Missense_Mutation p.C315F 0.49 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 19 282154 282154 C T PPAP2C Missense_Mutation p.A254T 0.52 deleterious(0.04) probably_damaging(0.991) TCGA-G5-6233-01 19 38102854 38102854 A G ZNF540 Missense_Mutation p.S225G 0.09 tolerated(0.21) benign(0) TCGA-G5-6233-01 19 38911748 38911748 G A RASGRP4 Missense_Mutation p.R101C 0.69 tolerated(0.08) possibly_damaging(0.816) TCGA-G5-6233-01 19 40172841 40172841 A G AC093063.3 5'Flank 0.60 TCGA-G5-6233-01 19 41115675 41115675 C G LTBP4 Missense_Mutation p.P595A 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-G5-6233-01 19 52658405 52658405 A G ZNF836 Missense_Mutation p.I844T 0.50 tolerated(0.72) probably_damaging(0.969) TCGA-G5-6233-01 19 55593919 55593919 C A EPS8L1 Missense_Mutation p.P388Q 0.51 tolerated(0.13) benign(0.007) TCGA-G5-6233-01 19 58371228 58371228 A G ZNF587 Missense_Mutation p.Q483R 0.45 tolerated(0.34) benign(0) TCGA-G5-6233-01 1 154456618 154456618 C - SHE 3'UTR 0.26 TCGA-G5-6233-01 1 156046565 156046566 - T MEX3A Frame_Shift_Ins p.L455Tfs*20 0.37 TCGA-G5-6233-01 1 160275561 160275561 G A COPA Missense_Mutation p.T482I 0.29 tolerated(0.39) benign(0.001) TCGA-G5-6233-01 1 161276511 161276511 A T MPZ Nonsense_Mutation p.Y145* 0.10 TCGA-G5-6233-01 1 161680565 161680565 C T FCRLA Missense_Mutation p.T55M 0.32 tolerated(0.23) benign(0.019) TCGA-G5-6233-01 1 165380061 165380061 T C RXRG Missense_Mutation p.D264G 0.29 deleterious(0.03) probably_damaging(0.942) TCGA-G5-6233-01 1 20141322 20141322 G T RNF186 Silent p.V91V 0.18 TCGA-G5-6233-01 1 203098231 203098231 C T ADORA1 Missense_Mutation p.L88F 0.38 deleterious(0) probably_damaging(0.998) TCGA-G5-6233-01 1 20466702 20466702 G A PLA2G2F Missense_Mutation p.A54T 0.11 deleterious(0.04) benign(0.377) TCGA-G5-6233-01 1 3322106 3322106 C T PRDM16 Silent p.H360H 0.31 TCGA-G5-6233-01 1 33957256 33957256 G T ZSCAN20 Missense_Mutation p.Q466H 0.28 tolerated(0.12) benign(0.01) TCGA-G5-6233-01 1 43778103 43778103 C T TIE1 Silent p.D586D 0.31 TCGA-G5-6233-01 1 44423791 44423791 C T IPO13 Silent p.D561D 0.14 TCGA-G5-6233-01 1 47883153 47883153 G A FOXE3 3'UTR 0.25 TCGA-G5-6233-01 1 62676493 62676493 C G L1TD1 Missense_Mutation p.Q683E 0.32 tolerated(0.73) benign(0.159) TCGA-G5-6233-01 1 6680350 6680350 G A PHF13 Missense_Mutation p.R210Q 0.29 deleterious(0.01) possibly_damaging(0.837) TCGA-G5-6233-01 1 894389 894389 T G NOC2L Missense_Mutation p.E33D 0.25 tolerated(0.08) benign(0.049) TCGA-G5-6233-01 20 1294095 1294095 G A SDCBP2 Silent p.T91T 0.38 TCGA-G5-6233-01 20 17434461 17434461 C T PCSK2 Silent p.D320D 0.31 TCGA-G5-6233-01 20 17462524 17462524 G A PCSK2 Missense_Mutation p.G576S 0.35 tolerated(0.23) benign(0.223) TCGA-G5-6233-01 20 23966334 23966334 G A GGTLC1 Silent p.N167N 0.06 TCGA-G5-6233-01 20 56730593 56730593 C T C20orf85 Missense_Mutation p.R74W 0.06 deleterious(0.01) benign(0.002) TCGA-G5-6233-01 21 33043626 33043626 C T SCAF4 3'UTR 0.43 TCGA-G5-6233-01 21 47976926 47976926 C T DIP2A Silent p.I1191I 0.48 TCGA-G5-6233-01 22 17684453 17684453 C T CECR1 Silent p.P251P 0.08 TCGA-G5-6233-01 22 29656110 29656110 T C RHBDD3 Missense_Mutation p.E367G 0.31 deleterious(0.04) benign(0.014) TCGA-G5-6233-01 22 31529155 31529155 G A INPP5J Silent p.A387A 0.47 TCGA-G5-6233-01 22 50217158 50217158 C T BRD1 Missense_Mutation p.D270N 0.47 deleterious(0.02) benign(0.105) TCGA-G5-6233-01 2 11332410 11332410 G A ROCK2 Missense_Mutation p.R1343W 0.30 deleterious(0) probably_damaging(0.987) TCGA-G5-6233-01 2 114501370 114501370 C T SLC35F5 Missense_Mutation p.S161N 0.36 deleterious(0) probably_damaging(0.954) TCGA-G5-6233-01 2 120690087 120690087 A G PTPN4 Silent p.Q386Q 0.36 TCGA-G5-6233-01 2 131525666 131525666 C T AMER3 3'UTR 0.27 TCGA-G5-6233-01 2 131672634 131672634 A G ARHGEF4 5'Flank 0.31 TCGA-G5-6233-01 2 138721971 138721971 G T HNMT 5'UTR 0.40 TCGA-G5-6233-01 2 170606216 170606216 G T KLHL23 Missense_Mutation p.G551W 0.26 tolerated(0.1) probably_damaging(1) TCGA-G5-6233-01 2 179411816 179411816 T C TTN Missense_Mutation p.Y31479C 0.31 TCGA-G5-6233-01 2 179411818 179411818 T C TTN Silent p.E31478E 0.31 TCGA-G5-6233-01 2 179604975 179604975 T C TTN Missense_Mutation p.R4329G 0.09 TCGA-G5-6233-01 2 201994711 201994711 G C CFLAR Silent p.L41L 0.30 TCGA-G5-6233-01 2 204320214 204320214 A G RAPH1 Silent p.R416R 0.10 TCGA-G5-6233-01 2 215013957 215013957 A G SPAG16 Missense_Mutation p.S563G 0.10 tolerated(0.08) possibly_damaging(0.632) TCGA-G5-6233-01 2 216226306 216226306 T C FN1 Missense_Mutation p.Q2469R 0.25 tolerated(0.85) benign(0.419) TCGA-G5-6233-01 2 220437270 220437270 G A INHA Silent p.L58L 0.13 TCGA-G5-6233-01 2 228777046 228777046 T C DAW1 Intron 0.30 TCGA-G5-6233-01 2 231236524 231236524 G T SP140L Intron 0.28 TCGA-G5-6233-01 2 238742777 238742777 A T RBM44 Missense_Mutation p.E1009D 0.11 tolerated(0.22) benign(0.059) TCGA-G5-6233-01 2 24440870 24440870 G A ITSN2 Missense_Mutation p.R1238C 0.24 deleterious(0) unknown(0) TCGA-G5-6233-01 2 32823034 32823034 A C BIRC6 Missense_Mutation p.K4610T 0.42 probably_damaging(1) TCGA-G5-6233-01 2 33952431 33952431 C T AC009499.1 Intron 0.41 TCGA-G5-6233-01 2 46986014 46986014 T C SOCS5 Silent p.S115S 0.36 TCGA-G5-6233-01 2 50280583 50280583 G A NRXN1 Silent p.I1358I 0.37 TCGA-G5-6233-01 2 74720355 74720355 G A TTC31 3'UTR 0.18 TCGA-G5-6233-01 3 113697118 113697118 T A KIAA1407 Missense_Mutation p.I841F 0.24 tolerated(0.56) benign(0.032) TCGA-G5-6233-01 3 139097009 139097009 C G COPB2 Missense_Mutation p.W126C 0.26 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 3 176743132 176743132 T G TBL1XR1 3'UTR 0.40 TCGA-G5-6233-01 3 180693163 180693163 G T FXR1 Nonsense_Mutation p.E556* 0.25 TCGA-G5-6233-01 3 181431060 181431060 C A SOX2 Silent p.P304P 0.25 TCGA-G5-6233-01 3 39178770 39178770 C A TTC21A Silent p.S1121S 0.40 TCGA-G5-6233-01 3 39306861 39306861 T A CX3CR1 3'UTR 0.31 TCGA-G5-6233-01 3 43345186 43345186 A C SNRK Missense_Mutation p.K164T 0.22 tolerated(0.16) benign(0.18) TCGA-G5-6233-01 3 98507289 98507289 A T ST3GAL6 Missense_Mutation p.K246N 0.24 tolerated(0.34) benign(0.102) TCGA-G5-6233-01 4 100334198 100334198 A G ADH7 3'UTR 0.38 TCGA-G5-6233-01 4 114262925 114262925 T C ANK2 Silent p.P1325P 0.30 TCGA-G5-6233-01 4 121732529 121732529 C G PRDM5 Missense_Mutation p.R314T 0.14 deleterious(0.01) probably_damaging(0.993) TCGA-G5-6233-01 4 126240247 126240247 T G FAT4 Missense_Mutation p.L894R 0.33 possibly_damaging(0.62) TCGA-G5-6233-01 4 134072779 134072779 A T PCDH10 Missense_Mutation p.N495I 0.10 deleterious(0) probably_damaging(0.999) TCGA-G5-6233-01 4 153864678 153864678 A G FHDC1 Missense_Mutation p.N157D 0.27 tolerated(0.1) possibly_damaging(0.491) TCGA-G5-6233-01 4 174450243 174450243 G A HAND2 Silent p.P66P 0.25 TCGA-G5-6233-01 4 184612478 184612478 C G TRAPPC11 Missense_Mutation p.Q635E 0.28 tolerated(0.95) benign(0.149) TCGA-G5-6233-01 4 185038976 185038976 G A ENPP6 Missense_Mutation p.P204L 0.35 tolerated(0.37) benign(0.084) TCGA-G5-6233-01 4 20258327 20258327 C T SLIT2 Missense_Mutation p.T71M 0.21 tolerated(0.22) possibly_damaging(0.906) TCGA-G5-6233-01 4 62936383 62936383 C T LPHN3 Silent p.A1389A 0.32 TCGA-G5-6233-01 4 66356200 66356200 C T EPHA5 Missense_Mutation p.A433T 0.31 deleterious(0.01) possibly_damaging(0.5) TCGA-G5-6233-01 4 70592870 70592870 T C SULT1B1 Missense_Mutation p.K276R 0.27 tolerated(1) benign(0.004) TCGA-G5-6233-01 5 132210285 132210285 T G LEAP2 3'UTR 0.57 TCGA-G5-6233-01 5 140262589 140262589 G A PCDHA13 Missense_Mutation p.V246I 0.58 tolerated_low_confidence(0.53) benign(0.007) TCGA-G5-6233-01 5 140263396 140263396 G A PCDHA13 Missense_Mutation p.G515S 0.47 deleterious_low_confidence(0.01) probably_damaging(0.987) TCGA-G5-6233-01 5 168620553 168620553 G A SLIT3 Missense_Mutation p.R115C 0.52 deleterious(0) probably_damaging(0.999) TCGA-G5-6233-01 5 173035171 173035171 T C BOD1 3'UTR 0.08 TCGA-G5-6233-01 5 175110264 175110264 T G HRH2 Missense_Mutation p.F10V 0.55 tolerated(0.47) benign(0.006) TCGA-G5-6233-01 5 26915997 26915997 T C CDH9 Silent p.L88L 0.09 TCGA-G5-6233-01 5 2748671 2748671 T A IRX2 Missense_Mutation p.Y384F 0.50 deleterious(0.01) probably_damaging(0.97) TCGA-G5-6233-01 5 35039428 35039428 C T AGXT2 Splice_Site p.X121_splice 0.14 TCGA-G5-6233-01 5 38504172 38504172 G T LIFR Missense_Mutation p.A448D 0.50 tolerated(0.06) benign(0.279) TCGA-G5-6233-01 5 43508740 43508740 C T C5orf34 Missense_Mutation p.R75Q 0.15 deleterious(0.02) probably_damaging(1) TCGA-G5-6233-01 5 72427609 72427609 T - TMEM171 3'UTR 0.10 TCGA-G5-6233-01 5 76249428 76249428 G A CRHBP Silent p.L28L 0.47 TCGA-G5-6233-01 5 89924637 89924637 C T GPR98 Silent p.S499S 0.51 TCGA-G5-6233-01 6 127652176 127652176 C T ECHDC1 Splice_Site p.X6_splice 0.49 TCGA-G5-6233-01 6 132643915 132643915 C T MOXD1 Missense_Mutation p.R403Q 0.57 deleterious(0) probably_damaging(0.979) TCGA-G5-6233-01 6 13306704 13306704 C T TBC1D7 Missense_Mutation p.E241K 0.36 tolerated(0.56) possibly_damaging(0.861) TCGA-G5-6233-01 6 152746578 152746578 C G SYNE1 Missense_Mutation p.M1735I 0.55 benign(0) TCGA-G5-6233-01 6 154428924 154428924 G A OPRM1 Intron 0.61 TCGA-G5-6233-01 6 26468668 26468668 G A BTN2A1 Missense_Mutation p.C492Y 0.15 tolerated(0.14) benign(0.001) TCGA-G5-6233-01 6 31895487 31895487 C T CFB 5'UTR 0.25 TCGA-G5-6233-01 6 32811777 32811777 C T PSMB8 5'UTR 0.13 TCGA-G5-6233-01 6 56397261 56397261 G C DST Missense_Mutation p.I3040M 0.09 probably_damaging(0.967) TCGA-G5-6233-01 6 56458939 56458939 T A DST Missense_Mutation p.Q1460L 0.30 probably_damaging(0.951) TCGA-G5-6233-01 7 102147170 102147170 G A RASA4B Missense_Mutation p.R134W 0.39 tolerated(0.15) probably_damaging(0.91) TCGA-G5-6233-01 7 107580708 107580708 C A LAMB1 Missense_Mutation p.D1163Y 0.13 deleterious(0) probably_damaging(0.988) TCGA-G5-6233-01 7 116759681 116759681 T G ST7 Missense_Mutation p.L101V 0.09 deleterious(0) possibly_damaging(0.578) TCGA-G5-6233-01 7 128494617 128494617 G A FLNC Missense_Mutation p.R2293H 0.16 deleterious(0.04) probably_damaging(1) TCGA-G5-6233-01 7 27185513 27185513 G A HOXA6 Missense_Mutation p.R156C 0.12 deleterious(0) possibly_damaging(0.684) TCGA-G5-6233-01 7 50514305 50514305 T C FIGNL1 Silent p.E227E 0.41 TCGA-G5-6233-01 7 53103860 53103860 G A POM121L12 Missense_Mutation p.A166T 0.33 tolerated(0.22) probably_damaging(0.913) TCGA-G5-6233-01 7 6042206 6042206 G T PMS2 Missense_Mutation p.H139N 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-G5-6233-01 7 82784610 82784614 AATCT - PCLO Frame_Shift_Del p.K448Tfs*96 0.44 TCGA-G5-6233-01 8 105509350 105509350 C A LRP12 Missense_Mutation p.G477V 0.29 tolerated(0.08) probably_damaging(1) TCGA-G5-6233-01 8 116426349 116426349 G A TRPS1 Missense_Mutation p.H1263Y 0.12 tolerated_low_confidence(0.11) benign(0.011) TCGA-G5-6233-01 8 133898849 133898849 C T TG Missense_Mutation p.T411M 0.09 tolerated(0.24) benign(0.006) TCGA-G5-6233-01 8 37672483 37672483 G - GPR124 Frame_Shift_Del p.K112Nfs*4 0.37 TCGA-G5-6233-01 9 111761433 111761433 A C CTNNAL1 Missense_Mutation p.F82C 0.32 deleterious(0) probably_damaging(1) TCGA-G5-6233-01 9 130167817 130167817 C T SLC2A8 Silent p.L423L 0.36 TCGA-G5-6233-01 9 134312016 134312016 G A PRRC2B Silent p.A101A 0.17 TCGA-G5-6233-01 9 135866606 135866606 C G GFI1B 3'UTR 0.50 TCGA-G5-6233-01 9 71555681 71555681 G A PIP5K1B Missense_Mutation p.D493N 0.35 tolerated_low_confidence(0.06) benign(0.265) TCGA-G5-6233-01 X 105139444 105139444 G A NRK Missense_Mutation p.A170T 0.68 deleterious(0.01) benign(0.01) TCGA-G5-6233-01 X 122537345 122537345 G A GRIA3 Missense_Mutation p.R423Q 0.70 tolerated(0.08) benign(0.007) TCGA-G5-6233-01 X 130413256 130413256 A C IGSF1 Missense_Mutation p.L569R 0.39 deleterious(0) probably_damaging(0.97) TCGA-G5-6233-01 X 13780531 13780531 A T OFD1 Missense_Mutation p.K819M 0.71 tolerated(0.05) possibly_damaging(0.768) TCGA-G5-6233-01 X 153696872 153696872 G T PLXNA3 Missense_Mutation p.S1397I 0.68 deleterious(0.01) probably_damaging(0.915) TCGA-G5-6233-01 X 34961583 34961583 G A FAM47B Missense_Mutation p.R212H 0.71 tolerated(0.72) benign(0.004) TCGA-G5-6233-01 X 37312732 37312732 A T PRRG1 Missense_Mutation p.Y172F 0.13 deleterious(0) probably_damaging(0.994) TCGA-G5-6233-01 X 47486559 47486559 G A CFP Silent p.T249T 0.14 TCGA-G5-6233-01 X 54224843 54224843 C G WNK3 Missense_Mutation p.G1773R 0.62 deleterious_low_confidence(0) possibly_damaging(0.655) TCGA-G5-6233-01 X 82764692 82764692 C A POU3F4 3'UTR 0.17 TCGA-G5-6235-01 10 100013367 100013367 C T LOXL4 Missense_Mutation p.R593Q 0.14 tolerated(0.47) benign(0.416) TCGA-G5-6235-01 10 115947905 115947906 - C TDRD1 Frame_Shift_Ins p.P107Afs*12 0.10 TCGA-G5-6235-01 10 115962921 115962921 A G TDRD1 Missense_Mutation p.T263A 0.16 tolerated(0.65) probably_damaging(0.953) TCGA-G5-6235-01 10 120514289 120514289 G C CACUL1 5'UTR 0.12 TCGA-G5-6235-01 10 24873346 24873346 G T ARHGAP21 Missense_Mutation p.L1958I 0.12 deleterious(0) probably_damaging(0.962) TCGA-G5-6235-01 10 45429195 45429195 C T TMEM72 Missense_Mutation p.P107L 0.15 deleterious(0) probably_damaging(1) TCGA-G5-6235-01 10 89127090 89127090 G A NUTM2D Splice_Site p.X546_splice 0.27 TCGA-G5-6235-01 10 97387287 97387287 T G ALDH18A1 Silent p.G330G 0.23 TCGA-G5-6235-01 11 126135298 126135298 G A SRPR Silent p.S392S 0.08 TCGA-G5-6235-01 11 32636242 32636242 A G CCDC73 Missense_Mutation p.L541S 0.13 tolerated(0.08) benign(0.048) TCGA-G5-6235-01 11 377005 377005 T C B4GALNT4 Missense_Mutation p.F628L 0.27 tolerated(0.14) unknown(0) TCGA-G5-6235-01 11 5462306 5462306 C A OR51I1 Missense_Mutation p.G147C 0.18 deleterious(0.01) possibly_damaging(0.712) TCGA-G5-6235-01 11 56380871 56380871 T A OR5M1 Silent p.L36L 0.14 TCGA-G5-6235-01 11 62298674 62298674 A G AHNAK Missense_Mutation p.V1072A 0.18 probably_damaging(0.995) TCGA-G5-6235-01 11 62380868 62380868 A G ROM1 Missense_Mutation p.S39G 0.14 tolerated(1) benign(0.386) TCGA-G5-6235-01 11 64506830 64506830 A T RASGRP2 Splice_Site p.X271_splice 0.14 TCGA-G5-6235-01 11 67132587 67132587 G A CLCF1 3'UTR 0.16 TCGA-G5-6235-01 11 88242010 88242010 G A GRM5 Missense_Mutation p.A1130V 0.26 tolerated_low_confidence(0.29) benign(0.012) TCGA-G5-6235-01 11 92534211 92534211 G A FAT3 Missense_Mutation p.V2678I 0.11 probably_damaging(0.999) TCGA-G5-6235-01 11 92714684 92714684 G A MTNR1B Missense_Mutation p.V99M 0.18 tolerated(0.26) benign(0.046) TCGA-G5-6235-01 11 93808490 93808490 C A HEPHL1 Missense_Mutation p.S552Y 0.09 deleterious(0) probably_damaging(0.954) TCGA-G5-6235-01 12 25398281 25398281 C T KRAS Missense_Mutation p.G13D 0.30 deleterious(0.04) possibly_damaging(0.506) TCGA-G5-6235-01 12 31945146 31945146 C T H3F3C 5'UTR 0.06 TCGA-G5-6235-01 12 40692100 40692100 C T LRRK2 Missense_Mutation p.P1051L 0.10 deleterious(0.01) benign(0.065) TCGA-G5-6235-01 12 48189107 48189107 G A HDAC7 Missense_Mutation p.R382W 0.42 deleterious(0) possibly_damaging(0.88) TCGA-G5-6235-01 12 51069160 51069160 A T DIP2B Missense_Mutation p.N282I 0.12 deleterious(0) probably_damaging(0.921) TCGA-G5-6235-01 12 53552447 53552447 G A CSAD Missense_Mutation p.R471C 0.13 deleterious(0) probably_damaging(0.938) TCGA-G5-6235-01 12 82147821 82147821 C T PPFIA2 Silent p.Q60Q 0.15 TCGA-G5-6235-01 12 85285912 85285912 G A SLC6A15 5'UTR 0.31 TCGA-G5-6235-01 13 103384217 103384217 G A CCDC168 Missense_Mutation p.P1648L 0.19 deleterious(0) unknown(0) TCGA-G5-6235-01 13 103384590 103384590 G A CCDC168 Missense_Mutation p.R1524C 0.09 deleterious(0.01) unknown(0) TCGA-G5-6235-01 13 37453599 37453599 G A SMAD9 Silent p.D76D 0.23 TCGA-G5-6235-01 13 37679002 37679002 T C CSNK1A1L Missense_Mutation p.N131S 0.39 tolerated_low_confidence(0.37) benign(0.076) TCGA-G5-6235-01 13 39425912 39425912 C T FREM2 Missense_Mutation p.R2278C 0.39 deleterious(0) probably_damaging(0.999) TCGA-G5-6235-01 13 46288409 46288409 G A SPERT Missense_Mutation p.V417M 0.11 tolerated(0.05) possibly_damaging(0.611) TCGA-G5-6235-01 13 49070356 49070356 G A RCBTB2 Missense_Mutation p.L496F 0.08 tolerated(0.28) probably_damaging(0.998) TCGA-G5-6235-01 13 50588628 50588628 G A TRIM13 3'Flank 0.06 TCGA-G5-6235-01 13 70275891 70275891 C A KLHL1 Missense_Mutation p.M730I 0.07 tolerated(0.37) benign(0.001) TCGA-G5-6235-01 14 21502341 21502341 C T RNASE13 Missense_Mutation p.S36N 0.11 tolerated(0.39) benign(0) TCGA-G5-6235-01 15 88472472 88472472 T A NTRK3 Missense_Mutation p.I695F 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-G5-6235-01 16 1272011 1272011 C T TPSG1 Missense_Mutation p.R248H 0.16 tolerated(0.23) probably_damaging(0.98) TCGA-G5-6235-01 16 16306096 16306096 C A ABCC6 Missense_Mutation p.C203F 0.08 deleterious(0) possibly_damaging(0.858) TCGA-G5-6235-01 16 2289989 2289989 T G ECI1 Missense_Mutation p.E300D 0.16 deleterious(0) benign(0.003) TCGA-G5-6235-01 16 27226086 27226086 C G KDM8 Intron 0.15 TCGA-G5-6235-01 17 17150847 17150847 G A COPS3 Missense_Mutation p.R389W 0.31 deleterious(0) benign(0.359) TCGA-G5-6235-01 17 29562775 29562775 G T NF1 Missense_Mutation p.M1285I 0.18 deleterious(0.01) possibly_damaging(0.67) TCGA-G5-6235-01 17 33880365 33880365 G T SLFN14 Missense_Mutation p.P430T 0.10 tolerated(0.07) benign(0.209) TCGA-G5-6235-01 17 35900630 35900630 C G SYNRG Missense_Mutation p.S1073T 0.10 deleterious(0.03) probably_damaging(0.99) TCGA-G5-6235-01 17 39633380 39633380 G A KRT35 Silent p.C432C 0.21 TCGA-G5-6235-01 17 40647711 40647711 C T ATP6V0A1 Missense_Mutation p.P520S 0.10 deleterious(0) possibly_damaging(0.79) TCGA-G5-6235-01 17 46030416 46030416 C T PRR15L Missense_Mutation p.S62N 0.06 tolerated(0.83) benign(0.004) TCGA-G5-6235-01 17 46608153 46608153 C T HOXB1 Silent p.A38A 0.14 TCGA-G5-6235-01 17 66429644 66429644 C A WIPI1 Silent p.T255T 0.24 TCGA-G5-6235-01 17 73132267 73132267 G A HN1 Missense_Mutation p.R126W 0.13 deleterious_low_confidence(0.01) benign(0.057) TCGA-G5-6235-01 17 74151352 74151352 G T RNF157 Missense_Mutation p.A582D 0.14 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-G5-6235-01 17 7579536 7579536 C A TP53 Nonsense_Mutation p.E51* 0.25 TCGA-G5-6235-01 18 22804815 22804815 C T ZNF521 Missense_Mutation p.V1023M 0.28 deleterious(0) probably_damaging(0.999) TCGA-G5-6235-01 18 43531068 43531068 C A EPG5 Missense_Mutation p.L463F 0.14 deleterious(0) probably_damaging(0.986) TCGA-G5-6235-01 18 44085885 44085885 G A LOXHD1 Missense_Mutation p.R821W 0.22 deleterious(0) probably_damaging(0.999) TCGA-G5-6235-01 19 10077070 10077070 C T COL5A3 Missense_Mutation p.A1568T 0.11 unknown(0) TCGA-G5-6235-01 19 15918703 15918703 C T OR10H1 Missense_Mutation p.V49I 0.21 tolerated(1) benign(0.006) TCGA-G5-6235-01 19 19656535 19656535 G A CILP2 Missense_Mutation p.V1061I 0.22 tolerated(1) benign(0.004) TCGA-G5-6235-01 19 2432464 2432464 C T LMNB2 Missense_Mutation p.A514T 0.19 tolerated(0.84) benign(0.01) TCGA-G5-6235-01 19 38055415 38055415 C A ZNF571 3'UTR 0.19 TCGA-G5-6235-01 19 52569529 52569529 T G ZNF841 Missense_Mutation p.T536P 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-G5-6235-01 19 54754937 54754937 C A LILRB5 Intron 0.14 TCGA-G5-6235-01 19 56329390 56329390 C T NLRP11 Missense_Mutation p.E51K 0.16 tolerated(0.07) benign(0.067) TCGA-G5-6235-01 19 58697120 58697120 G A ZNF274 Silent p.P25P 0.12 TCGA-G5-6235-01 19 58773427 58773427 G A ZNF544 Silent p.T485T 0.12 TCGA-G5-6235-01 1 116380728 116380728 C A NHLH2 Missense_Mutation p.R89L 0.25 deleterious(0.01) probably_damaging(0.975) TCGA-G5-6235-01 1 13718579 13718579 G T PRAMEF17 Missense_Mutation p.A348S 0.16 tolerated(0.39) possibly_damaging(0.69) TCGA-G5-6235-01 1 155896605 155896605 A C KIAA0907 Missense_Mutation p.I181M 0.08 deleterious(0.03) probably_damaging(0.972) TCGA-G5-6235-01 1 167096275 167096275 C T DUSP27 Missense_Mutation p.T636M 0.26 deleterious(0) possibly_damaging(0.799) TCGA-G5-6235-01 1 180063690 180063690 T C CEP350 Missense_Mutation p.L2817S 0.14 possibly_damaging(0.883) TCGA-G5-6235-01 1 206241533 206241533 G A C1orf186 Missense_Mutation p.H86Y 0.25 deleterious(0.02) possibly_damaging(0.579) TCGA-G5-6235-01 1 228494787 228494787 C T OBSCN Missense_Mutation p.R4995C 0.21 benign(0.008) TCGA-G5-6235-01 1 23696374 23696374 T A C1orf213 3'UTR 0.08 TCGA-G5-6235-01 1 23763960 23763960 G A ASAP3 Missense_Mutation p.R370W 0.13 deleterious(0) benign(0.431) TCGA-G5-6235-01 1 247712512 247712512 C T GCSAML Nonsense_Mutation p.R7* 0.18 TCGA-G5-6235-01 1 248129081 248129081 C A OR2AK2 Missense_Mutation p.L150I 0.15 tolerated(0.06) possibly_damaging(0.76) TCGA-G5-6235-01 1 43909272 43909272 G A SZT2 Missense_Mutation p.R2820H 0.16 tolerated(0.12) probably_damaging(0.997) TCGA-G5-6235-01 1 91781407 91781407 G A HFM1 Silent p.D1035D 0.13 TCGA-G5-6235-01 20 17437010 17437010 C T PCSK2 Silent p.Y373Y 0.14 TCGA-G5-6235-01 20 17475196 17475196 G A BFSP1 Silent p.D507D 0.08 TCGA-G5-6235-01 20 33582119 33582119 C T MYH7B Missense_Mutation p.A914V 0.36 benign(0.124) TCGA-G5-6235-01 20 377085 377085 G A TRIB3 Silent p.G276G 0.27 TCGA-G5-6235-01 20 40112055 40112055 T A CHD6 Missense_Mutation p.I788F 0.11 deleterious(0) probably_damaging(0.971) TCGA-G5-6235-01 20 47991437 47991437 G A KCNB1 Silent p.F220F 0.10 TCGA-G5-6235-01 20 61288175 61288175 C A SLCO4A1 Missense_Mutation p.F123L 0.14 tolerated(0.24) benign(0.074) TCGA-G5-6235-01 21 40778428 40778428 C A LCA5L Nonsense_Mutation p.E465* 0.13 TCGA-G5-6235-01 21 41719761 41719761 C T DSCAM Missense_Mutation p.R349H 0.14 tolerated(0.05) possibly_damaging(0.749) TCGA-G5-6235-01 21 47418843 47418843 C T COL6A1 Silent p.D548D 0.16 TCGA-G5-6235-01 22 18846101 18846101 C T BCRP7 RNA 0.06 TCGA-G5-6235-01 22 46656231 46656231 C A PKDREJ Missense_Mutation p.V997F 0.09 deleterious(0) possibly_damaging(0.793) TCGA-G5-6235-01 22 50879368 50879368 C T PPP6R2 Missense_Mutation p.A805V 0.14 tolerated(0.24) benign(0.031) TCGA-G5-6235-01 2 110374263 110374263 A G SOWAHC 3'UTR 0.16 TCGA-G5-6235-01 2 122216511 122216511 C T CLASP1 Missense_Mutation p.A407T 0.14 deleterious(0.04) probably_damaging(1) TCGA-G5-6235-01 2 170137024 170137024 C T LRP2 Missense_Mutation p.E393K 0.15 benign(0.006) TCGA-G5-6235-01 2 179476518 179476518 G C TTN Missense_Mutation p.P16840A 0.16 TCGA-G5-6235-01 2 207175290 207175290 C A ZDBF2 Missense_Mutation p.S2013Y 0.18 deleterious(0) possibly_damaging(0.608) TCGA-G5-6235-01 2 215890452 215890452 C G ABCA12 Missense_Mutation p.R411P 0.12 tolerated(0.14) benign(0.115) TCGA-G5-6235-01 2 220162096 220162096 C T PTPRN Silent p.P649P 0.25 TCGA-G5-6235-01 2 225695293 225695293 T A DOCK10 Missense_Mutation p.M1001L 0.13 deleterious(0.02) benign(0.041) TCGA-G5-6235-01 2 242179360 242179360 C T HDLBP Missense_Mutation p.V783I 0.16 deleterious(0.04) possibly_damaging(0.795) TCGA-G5-6235-01 2 242694516 242694516 G A D2HGDH Intron 0.09 TCGA-G5-6235-01 2 27930774 27930774 T A AC074091.13 Missense_Mutation p.I87F 0.29 benign(0) TCGA-G5-6235-01 2 54483335 54483335 A T TSPYL6 5'UTR 0.09 TCGA-G5-6235-01 2 71886126 71886126 G A DYSF Missense_Mutation p.R1625Q 0.17 tolerated(0.17) benign(0.028) TCGA-G5-6235-01 2 73490914 73490914 C T FBXO41 Missense_Mutation p.G656E 0.18 tolerated(0.05) probably_damaging(0.999) TCGA-G5-6235-01 3 148562495 148562495 A G CPB1 Missense_Mutation p.H240R 0.18 tolerated(0.07) benign(0.001) TCGA-G5-6235-01 3 184104655 184104655 C T CHRD Missense_Mutation p.P740L 0.15 deleterious(0) probably_damaging(0.98) TCGA-G5-6235-01 3 38292940 38292940 C T OXSR1 Silent p.V474V 0.12 TCGA-G5-6235-01 3 49161044 49161044 G A LAMB2 Missense_Mutation p.T1273I 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-G5-6235-01 3 49848739 49848739 C T UBA7 Missense_Mutation p.M363I 0.17 tolerated(0.39) benign(0.001) TCGA-G5-6235-01 3 50385661 50385661 C G NPRL2 Missense_Mutation p.A276P 0.09 tolerated(1) benign(0.001) TCGA-G5-6235-01 3 52391649 52391649 A G DNAH1 Missense_Mutation p.D1293G 0.13 benign(0.111) TCGA-G5-6235-01 3 52522565 52522565 G T NISCH Silent p.T1019T 0.18 TCGA-G5-6235-01 4 164061373 164061373 A C NAF1 Splice_Site p.X293_splice 0.09 TCGA-G5-6235-01 4 17711055 17711055 C A FAM184B Silent p.A118A 0.12 TCGA-G5-6235-01 4 95129685 95129685 G T SMARCAD1 Missense_Mutation p.G47V 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.49) TCGA-G5-6235-01 5 112174631 112174631 C T APC Nonsense_Mutation p.R1114* 0.20 TCGA-G5-6235-01 5 112175348 112175348 G T APC Nonsense_Mutation p.E1353* 0.23 TCGA-G5-6235-01 5 1264569 1264569 G A TERT Silent p.C931C 0.14 TCGA-G5-6235-01 5 139202353 139202353 C T PSD2 Missense_Mutation p.T418M 0.19 deleterious(0) probably_damaging(0.994) TCGA-G5-6235-01 5 140084144 140084144 G A ZMAT2 Silent p.E148E 0.17 TCGA-G5-6235-01 5 140188224 140188224 G T PCDHA4 Silent p.A484A 0.20 TCGA-G5-6235-01 5 140762692 140762692 G A PCDHGA7 Missense_Mutation p.A76T 0.28 deleterious_low_confidence(0.04) benign(0.382) TCGA-G5-6235-01 5 149495377 149495377 C T PDGFRB Silent p.P1090P 0.15 TCGA-G5-6235-01 5 15936756 15936756 G A FBXL7 Missense_Mutation p.D313N 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-G5-6235-01 5 32089484 32089484 C T PDZD2 Missense_Mutation p.T1977M 0.16 tolerated(0.06) benign(0.066) TCGA-G5-6235-01 5 89940600 89940600 C T GPR98 Nonsense_Mutation p.Q938* 0.10 TCGA-G5-6235-01 5 95768696 95768696 G A PCSK1 Silent p.C17C 0.18 TCGA-G5-6235-01 6 119344188 119344188 G T FAM184A Missense_Mutation p.H358N 0.12 tolerated(0.15) benign(0.433) TCGA-G5-6235-01 6 131917158 131917158 A - MED23 Frame_Shift_Del p.L975* 0.09 TCGA-G5-6235-01 6 159654306 159654306 G A FNDC1 Missense_Mutation p.R921Q 0.12 tolerated_low_confidence(0.06) unknown(0) TCGA-G5-6235-01 6 30523411 30523411 C T GNL1 Missense_Mutation p.E54K 0.22 tolerated(0.07) benign(0.004) TCGA-G5-6235-01 6 31743986 31743986 C T VWA7 Missense_Mutation p.A90T 0.11 deleterious(0.01) possibly_damaging(0.867) TCGA-G5-6235-01 6 33232205 33232205 G A VPS52 Silent p.S490S 0.12 TCGA-G5-6235-01 6 41774568 41774568 C T USP49 Missense_Mutation p.D52N 0.07 deleterious(0) benign(0.008) TCGA-G5-6235-01 6 52615427 52615427 G T GSTA2 Missense_Mutation p.P206H 0.14 deleterious(0) possibly_damaging(0.695) TCGA-G5-6235-01 6 82461682 82461682 A C FAM46A Silent p.P59P 0.12 TCGA-G5-6235-01 7 107689918 107689918 A C LAMB4 Missense_Mutation p.I1325M 0.15 deleterious(0.04) benign(0.372) TCGA-G5-6235-01 7 133948672 133948672 G A LRGUK Missense_Mutation p.R808H 0.10 tolerated(0.24) benign(0.002) TCGA-G5-6235-01 7 138264124 138264125 - A TRIM24 Frame_Shift_Ins p.P812Tfs*12 0.12 TCGA-G5-6235-01 7 143747768 143747768 A G OR2A5 Missense_Mutation p.I92V 0.13 deleterious(0.02) benign(0.076) TCGA-G5-6235-01 7 143748026 143748026 T C OR2A5 Missense_Mutation p.F178L 0.11 deleterious(0.03) possibly_damaging(0.651) TCGA-G5-6235-01 7 143748213 143748213 C A OR2A5 Missense_Mutation p.T240N 0.17 deleterious(0) probably_damaging(1) TCGA-G5-6235-01 7 4169684 4169684 G A SDK1 Missense_Mutation p.G1362R 0.30 deleterious(0) probably_damaging(0.989) TCGA-G5-6235-01 7 47467961 47467961 C T TNS3 Missense_Mutation p.R113H 0.11 deleterious(0) probably_damaging(0.999) TCGA-G5-6235-01 7 4959914 4959914 A G MMD2 Missense_Mutation p.S60P 0.08 deleterious(0) possibly_damaging(0.861) TCGA-G5-6235-01 7 83277848 83277848 G A SEMA3E Missense_Mutation p.A4V 0.08 tolerated(0.06) benign(0) TCGA-G5-6235-01 7 94214647 94214647 T A SGCE 3'UTR 0.13 TCGA-G5-6235-01 7 99662465 99662465 C T ZSCAN21 3'UTR 0.10 TCGA-G5-6235-01 8 125015536 125015536 C G FER1L6 Missense_Mutation p.P550R 0.17 tolerated(0.12) benign(0.258) TCGA-G5-6235-01 8 139164971 139164971 C A FAM135B Missense_Mutation p.D583Y 0.24 deleterious(0.03) benign(0.234) TCGA-G5-6235-01 8 139620232 139620232 C A COL22A1 Missense_Mutation p.G1327C 0.10 unknown(0) TCGA-G5-6235-01 8 86572590 86572590 C A REXO1L1P 3'UTR 0.10 TCGA-G5-6235-01 9 135447838 135447838 C T C9orf171 Missense_Mutation p.R302W 0.21 tolerated(0.17) benign(0.395) TCGA-G5-6235-01 9 135458566 135458566 C T BARHL1 Missense_Mutation p.R128C 0.23 tolerated(0.09) benign(0.002) TCGA-G5-6235-01 9 32785192 32785192 C A TMEM215 3'UTR 0.12 TCGA-G5-6235-01 9 74305087 74305087 G A TMEM2 Missense_Mutation p.R1258C 0.11 deleterious(0.01) benign(0.001) TCGA-G5-6235-01 X 148584939 148584939 G C IDS Silent p.S107S 0.11 TCGA-G5-6235-01 X 153070578 153070578 T C PDZD4 Missense_Mutation p.K246E 0.19 tolerated(0.71) benign(0.138) TCGA-G5-6235-01 X 19039316 19039316 G A GPR64 Silent p.S183S 0.10 TCGA-G5-6235-01 X 22291524 22291524 A T ZNF645 Missense_Mutation p.K139M 0.19 tolerated(1) probably_damaging(0.984) TCGA-G5-6235-01 X 49834532 49834532 A G CLCN5 Splice_Site p.X55_splice 0.08 TCGA-G5-6235-01 X 79698263 79698263 C T FAM46D Silent p.H75H 0.17 TCGA-G5-6235-01 X 83730299 83730299 T A HDX Missense_Mutation p.Q36L 0.18 deleterious(0) probably_damaging(0.991) TCGA-G5-6572-01 10 24669936 24669936 C T KIAA1217 Missense_Mutation p.R165W 0.35 deleterious(0) probably_damaging(0.999) TCGA-G5-6572-01 10 30315795 30315795 C T KIAA1462 Silent p.V1094V 0.30 TCGA-G5-6572-01 10 50098713 50098713 C T WDFY4 Silent p.C2419C 0.38 TCGA-G5-6572-01 10 89717709 89717709 A C PTEN Missense_Mutation p.Q245P 0.27 tolerated(0.14) benign(0.012) TCGA-G5-6572-01 10 95088663 95088663 C G MYOF Missense_Mutation p.G1663A 0.57 deleterious(0) benign(0.065) TCGA-G5-6572-01 11 126283435 126283435 C A ST3GAL4 Silent p.A269A 0.38 TCGA-G5-6572-01 11 126391225 126391225 G A KIRREL3 Missense_Mutation p.R140C 0.31 deleterious(0) probably_damaging(0.97) TCGA-G5-6572-01 11 17757790 17757790 G A KCNC1 Missense_Mutation p.D81N 0.44 tolerated(0.19) possibly_damaging(0.758) TCGA-G5-6572-01 11 214322 214322 C T RIC8A Missense_Mutation p.S529F 0.41 deleterious(0.01) unknown(0) TCGA-G5-6572-01 11 62414734 62414734 G A INTS5 Missense_Mutation p.R940C 0.38 tolerated(0.08) possibly_damaging(0.83) TCGA-G5-6572-01 11 7079034 7079034 G C NLRP14 Missense_Mutation p.L806F 0.32 deleterious(0) probably_damaging(0.999) TCGA-G5-6572-01 12 123479375 123479375 T C PITPNM2 Missense_Mutation p.R736G 0.18 deleterious(0) probably_damaging(0.997) TCGA-G5-6572-01 12 130927120 130927120 C T RIMBP2 Silent p.T242T 0.29 TCGA-G5-6572-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.78 deleterious(0.03) possibly_damaging(0.644) TCGA-G5-6572-01 13 48954334 48954335 TT - RB1 Frame_Shift_Del p.L486Ifs*6 0.35 TCGA-G5-6572-01 14 23237166 23237166 G C OXA1L Splice_Site p.X136_splice 0.43 TCGA-G5-6572-01 14 24044902 24044902 G A JPH4 Silent p.A381A 0.43 TCGA-G5-6572-01 14 70883642 70883642 C T SYNJ2BP Silent p.E13E 0.32 TCGA-G5-6572-01 14 74185997 74185997 G A ELMSAN1 3'UTR 0.42 TCGA-G5-6572-01 14 94038362 94038362 G A UNC79 Silent p.P449P 0.32 TCGA-G5-6572-01 15 79586358 79586358 G A ANKRD34C Silent p.L244L 0.37 TCGA-G5-6572-01 15 82336071 82336071 G A MEX3B Silent p.F380F 0.23 TCGA-G5-6572-01 16 19651334 19651334 T A C16orf62 Intron 0.34 TCGA-G5-6572-01 16 31885126 31885126 C G ZNF267 5'UTR 0.33 TCGA-G5-6572-01 16 3335704 3335704 C G ZNF263 Missense_Mutation p.L198V 0.35 tolerated(1) probably_damaging(0.978) TCGA-G5-6572-01 16 61689474 61689474 G A CDH8 Silent p.D602D 0.36 TCGA-G5-6572-01 16 9934623 9934623 G A GRIN2A Missense_Mutation p.S511L 0.30 deleterious(0) probably_damaging(0.999) TCGA-G5-6572-01 17 3651314 3651314 A G ITGAE Missense_Mutation p.M686T 0.12 deleterious(0) possibly_damaging(0.765) TCGA-G5-6572-01 17 45925629 45925629 G A SP6 Missense_Mutation p.P56L 0.53 deleterious_low_confidence(0.01) benign(0.216) TCGA-G5-6572-01 17 76067174 76067174 G A TNRC6C Silent p.K926K 0.35 TCGA-G5-6572-01 17 8658860 8658860 G A SPDYE4 Missense_Mutation p.R155C 0.34 deleterious(0.04) possibly_damaging(0.647) TCGA-G5-6572-01 18 3456461 3456462 - C TGIF1 Frame_Shift_Ins p.K173Qfs*13 0.28 TCGA-G5-6572-01 19 15587002 15587002 G T PGLYRP2 Missense_Mutation p.A160D 0.24 tolerated(0.07) benign(0.01) TCGA-G5-6572-01 19 17213325 17213325 C T MYO9B Silent p.S266S 0.60 TCGA-G5-6572-01 19 22575670 22575670 T C ZNF98 Missense_Mutation p.R123G 0.06 deleterious(0.04) benign(0) TCGA-G5-6572-01 19 31038893 31038893 G A ZNF536 Silent p.T789T 0.29 TCGA-G5-6572-01 19 51274381 51274381 C T GPR32 Missense_Mutation p.A175V 0.31 deleterious(0.01) benign(0.109) TCGA-G5-6572-01 19 55085369 55085369 G T LILRA2 Silent p.L8L 0.12 TCGA-G5-6572-01 19 55697897 55697897 G A PTPRH Missense_Mutation p.R860W 0.21 probably_damaging(0.999) TCGA-G5-6572-01 19 9763815 9763815 C T ZNF562 Missense_Mutation p.R364Q 0.09 deleterious(0.05) possibly_damaging(0.558) TCGA-G5-6572-01 1 152770485 152770485 G C LCE1D Missense_Mutation p.C72S 0.53 unknown(0) TCGA-G5-6572-01 1 176926877 176926877 G A ASTN1 Silent p.N608N 0.58 TCGA-G5-6572-01 1 177000026 177000026 G T ASTN1 Missense_Mutation p.P310T 0.24 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-G5-6572-01 1 19992455 19992455 C T HTR6 Missense_Mutation p.T70M 0.62 tolerated(0.8) benign(0.069) TCGA-G5-6572-01 1 202727590 202727590 C G KDM5B Missense_Mutation p.D376H 0.13 deleterious(0) probably_damaging(0.91) TCGA-G5-6572-01 1 202727591 202727591 C T KDM5B Silent p.R375R 0.11 TCGA-G5-6572-01 1 237758849 237758849 C T RYR2 Silent p.P1496P 0.50 TCGA-G5-6572-01 1 243328923 243328923 G C CEP170 Missense_Mutation p.T780S 0.46 tolerated(1) benign(0.001) TCGA-G5-6572-01 1 245765895 245765895 G A KIF26B Missense_Mutation p.R456H 0.21 deleterious(0) unknown(0) TCGA-G5-6572-01 1 45887458 45887458 G A TESK2 Missense_Mutation p.R95W 0.10 deleterious(0.03) probably_damaging(0.988) TCGA-G5-6572-01 1 57340634 57340634 A G C8A Missense_Mutation p.S62G 0.12 tolerated(0.17) benign(0.103) TCGA-G5-6572-01 1 93599309 93599309 C T MTF2 Missense_Mutation p.R404C 0.50 deleterious(0.02) possibly_damaging(0.776) TCGA-G5-6572-01 20 2776424 2776424 G A CPXM1 Missense_Mutation p.P514L 0.21 tolerated(0.18) benign(0.061) TCGA-G5-6572-01 20 40085924 40085924 G A CHD6 Nonsense_Mutation p.R937* 0.14 TCGA-G5-6572-01 20 60888833 60888833 C T LAMA5 Missense_Mutation p.V2844I 0.54 benign(0.068) TCGA-G5-6572-01 21 39087252 39087252 C T KCNJ6 Missense_Mutation p.V70M 0.37 tolerated(0.69) benign(0.301) TCGA-G5-6572-01 22 22051266 22051266 G A PPIL2 3'UTR 0.52 TCGA-G5-6572-01 22 29886073 29886074 - A NEFH Frame_Shift_Ins p.E818Gfs*74 0.32 TCGA-G5-6572-01 2 174104224 174104224 G A MLTK Silent p.Q453Q 0.57 TCGA-G5-6572-01 2 179702075 179702075 A C CCDC141 Missense_Mutation p.Y1291D 0.53 tolerated(0.19) benign(0.142) TCGA-G5-6572-01 2 27275988 27275988 C A AGBL5 Missense_Mutation p.F54L 0.28 deleterious(0) probably_damaging(0.913) TCGA-G5-6572-01 2 31147654 31147654 C T GALNT14 Missense_Mutation p.R401H 0.49 tolerated(0.41) benign(0.005) TCGA-G5-6572-01 2 43452342 43452343 - A ZFP36L2 Frame_Shift_Ins p.H201Sfs*273 0.65 TCGA-G5-6572-01 2 58449079 58449079 A C FANCL Missense_Mutation p.D124E 0.30 tolerated(0.22) benign(0.064) TCGA-G5-6572-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.60 deleterious(0.01) probably_damaging(0.964) TCGA-G5-6572-01 2 72360318 72360318 C T CYP26B1 Missense_Mutation p.R327Q 0.30 tolerated(0.48) benign(0.111) TCGA-G5-6572-01 2 74596472 74596472 G T DCTN1 Nonsense_Mutation p.Y513* 0.25 TCGA-G5-6572-01 3 119545607 119545607 T C GSK3B 3'UTR 0.45 TCGA-G5-6572-01 3 49756319 49756319 G A AMIGO3 Missense_Mutation p.R194W 0.25 tolerated(0.12) benign(0.179) TCGA-G5-6572-01 4 17711179 17711179 G A FAM184B Missense_Mutation p.A77V 0.38 tolerated(0.17) benign(0.019) TCGA-G5-6572-01 4 6082006 6082006 G A JAKMIP1 Missense_Mutation p.R379W 0.36 deleterious(0) probably_damaging(0.981) TCGA-G5-6572-01 4 73003776 73003776 G A NPFFR2 Silent p.T218T 0.28 TCGA-G5-6572-01 5 112174784 112174784 A T APC Nonsense_Mutation p.K1165* 0.18 TCGA-G5-6572-01 5 140187568 140187568 G A PCDHA4 Missense_Mutation p.A266T 0.32 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-G5-6572-01 5 140516518 140516518 C T PCDHB5 Missense_Mutation p.S501F 0.43 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-G5-6572-01 5 140531506 140531506 G A PCDHB6 Silent p.S556S 0.48 TCGA-G5-6572-01 5 141303493 141303493 G C KIAA0141 5'UTR 0.36 TCGA-G5-6572-01 5 149431476 149431476 C T HMGXB3 Silent p.Y1200Y 0.30 TCGA-G5-6572-01 5 169144428 169144428 A G DOCK2 Missense_Mutation p.H691R 0.39 deleterious(0) probably_damaging(0.973) TCGA-G5-6572-01 5 41917558 41917558 T A C5orf51 3'UTR 0.33 TCGA-G5-6572-01 5 54579230 54579230 C T DHX29 Missense_Mutation p.R589Q 0.29 tolerated(0.32) benign(0.369) TCGA-G5-6572-01 5 60189424 60189424 G A ERCC8 Intron 0.38 TCGA-G5-6572-01 5 71756503 71756503 C T ZNF366 Missense_Mutation p.G274D 0.31 tolerated(0.07) probably_damaging(0.998) TCGA-G5-6572-01 5 85578590 85578590 G A NBPF22P RNA 0.38 TCGA-G5-6572-01 5 96119749 96119749 A T ERAP1 Nonsense_Mutation p.L660* 0.41 TCGA-G5-6572-01 6 111493991 111493991 T C SLC16A10 Missense_Mutation p.V146A 0.34 tolerated(0.18) possibly_damaging(0.728) TCGA-G5-6572-01 6 152757221 152757221 T C SYNE1 Missense_Mutation p.T1389A 0.32 benign(0.016) TCGA-G5-6572-01 6 168442761 168442761 C - KIF25 Frame_Shift_Del p.A255Qfs*27 0.30 TCGA-G5-6572-01 6 27218484 27218484 C T PRSS16 Missense_Mutation p.R164C 0.44 deleterious(0) possibly_damaging(0.901) TCGA-G5-6572-01 6 32322902 32322902 T A C6orf10 Silent p.L86L 0.32 TCGA-G5-6572-01 7 111428728 111428728 A T DOCK4 Missense_Mutation p.F1131I 0.26 deleterious(0) probably_damaging(0.999) TCGA-G5-6572-01 7 121756777 121756777 A C AASS Missense_Mutation p.H268Q 0.31 tolerated(0.32) possibly_damaging(0.604) TCGA-G5-6572-01 7 138763340 138763340 C T ZC3HAV1 Missense_Mutation p.E511K 0.61 tolerated(0.05) benign(0) TCGA-G5-6572-01 7 42005957 42005957 C T GLI3 Missense_Mutation p.R905H 0.88 deleterious(0.02) probably_damaging(0.999) TCGA-G5-6572-01 7 48319077 48319077 G A ABCA13 Missense_Mutation p.M2762I 0.21 benign(0.013) TCGA-G5-6572-01 8 20072371 20072371 C T ATP6V1B2 Missense_Mutation p.P324S 0.23 deleterious(0) probably_damaging(0.967) TCGA-G5-6572-01 8 68184016 68184016 G - ARFGEF1 Frame_Shift_Del p.P498Qfs*22 0.18 TCGA-G5-6572-01 8 97269443 97269443 C G MTERFD1 Intron 0.69 TCGA-G5-6572-01 9 130551580 130551580 G T CDK9 Missense_Mutation p.D293Y 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-G5-6572-01 9 139889917 139889917 C T CLIC3 Silent p.L82L 0.44 TCGA-G5-6572-01 9 39086580 39086580 C T CNTNAP3 Intron 0.32 TCGA-G5-6572-01 9 90387898 90387898 C T CTSL3P RNA 0.37 TCGA-G5-6572-01 9 95064086 95064087 - T NOL8 Frame_Shift_Ins p.K975Efs*6 0.32 TCGA-G5-6572-01 X 135056122 135056122 A T MMGT1 5'UTR 0.72 TCGA-G5-6572-01 X 49074433 49074433 C T CACNA1F Missense_Mutation p.R998Q 0.85 deleterious(0) possibly_damaging(0.666) TCGA-G5-6572-01 X 76944369 76944369 T C ATRX Missense_Mutation p.N179S 0.59 probably_damaging(0.93) TCGA-G5-6641-01 10 102222887 102222888 - T WNT8B 5'UTR 0.14 TCGA-G5-6641-01 10 43610157 43610157 G C RET Missense_Mutation p.Q703H 0.38 tolerated(0.14) probably_damaging(0.94) TCGA-G5-6641-01 10 48426698 48426699 - AGGGATGAT GDF10 In_Frame_Ins p.I434_P436dup 0.37 TCGA-G5-6641-01 10 50822317 50822317 A C CHAT Silent p.R28R 0.37 TCGA-G5-6641-01 10 5567832 5567832 G A CALML3 3'UTR 0.29 TCGA-G5-6641-01 11 108178712 108178712 G T ATM Splice_Site p.X1921_splice 0.35 TCGA-G5-6641-01 11 108196879 108196880 - A ATM Frame_Shift_Ins p.E2304Gfs*69 0.32 TCGA-G5-6641-01 11 123814296 123814296 C T OR6T1 Missense_Mutation p.V84I 0.37 tolerated(0.33) benign(0.001) TCGA-G5-6641-01 11 48511122 48511122 G T OR4A47 Missense_Mutation p.A260S 0.21 tolerated_low_confidence(0.09) possibly_damaging(0.72) TCGA-G5-6641-01 11 49974225 49974242 TCTATGAAAACAAGACTA - OR4C13 In_Frame_Del p.Y85_I90del 0.37 TCGA-G5-6641-01 11 55890364 55890364 C T OR8H3 Silent p.N172N 0.15 TCGA-G5-6641-01 11 61017285 61017285 C T PGA5 Silent p.D306D 0.14 TCGA-G5-6641-01 11 64622144 64622144 G T EHD1 Missense_Mutation p.F422L 0.42 deleterious(0.03) benign(0.181) TCGA-G5-6641-01 11 65789067 65789067 T C CATSPER1 Missense_Mutation p.T531A 0.17 tolerated(0.5) benign(0.439) TCGA-G5-6641-01 11 76867133 76867133 A G MYO7A Missense_Mutation p.I156V 0.12 deleterious(0.05) probably_damaging(0.99) TCGA-G5-6641-01 12 105150990 105150990 C T CHST11 Silent p.H156H 0.57 TCGA-G5-6641-01 12 11546440 11546440 G A PRB2 Missense_Mutation p.P191L 0.44 tolerated(0.26) unknown(0) TCGA-G5-6641-01 12 22811990 22811990 A G ETNK1 Silent p.A242A 0.10 TCGA-G5-6641-01 12 31106967 31106967 C G TSPAN11 Missense_Mutation p.I14M 0.08 deleterious(0.01) benign(0.125) TCGA-G5-6641-01 12 42859035 42859035 A G PRICKLE1 Silent p.Y267Y 0.10 TCGA-G5-6641-01 12 70048897 70048897 G A BEST3 Silent p.S599S 0.06 TCGA-G5-6641-01 12 7310184 7310184 G A CLSTN3 Missense_Mutation p.R876H 0.10 tolerated(0.22) benign(0.035) TCGA-G5-6641-01 13 108861616 108861616 C G LIG4 Missense_Mutation p.M667I 0.09 tolerated(0.7) benign(0.004) TCGA-G5-6641-01 13 20039692 20039692 T A TPTE2 Missense_Mutation p.L175F 0.11 tolerated(0.41) benign(0.084) TCGA-G5-6641-01 13 41943234 41943234 T A NAA16 Missense_Mutation p.S588T 0.18 tolerated(0.32) benign(0.1) TCGA-G5-6641-01 14 24737589 24737589 G A RABGGTA Silent p.D348D 0.27 TCGA-G5-6641-01 14 74179829 74179829 G C PNMA1 Missense_Mutation p.P172A 0.27 deleterious(0.03) benign(0.265) TCGA-G5-6641-01 15 29561261 29561261 C T NDNL2 Missense_Mutation p.G217R 0.53 deleterious(0) probably_damaging(1) TCGA-G5-6641-01 15 42003205 42003205 T G MGA Silent p.S914S 0.59 TCGA-G5-6641-01 16 11362995 11362995 C T TNP2 Missense_Mutation p.R42H 0.42 tolerated(0.3) possibly_damaging(0.812) TCGA-G5-6641-01 16 69401082 69401082 G A TERF2 Missense_Mutation p.T281I 0.36 deleterious(0) probably_damaging(0.991) TCGA-G5-6641-01 16 77353780 77353780 G A ADAMTS18 Missense_Mutation p.A833V 0.36 deleterious(0) benign(0.344) TCGA-G5-6641-01 17 62265719 62265719 G A TEX2 Missense_Mutation p.R752C 0.11 deleterious(0.01) possibly_damaging(0.886) TCGA-G5-6641-01 17 7976088 7976088 C T ALOX12B 3'UTR 0.22 TCGA-G5-6641-01 18 5891787 5891787 C T TMEM200C Silent p.A92A 0.31 TCGA-G5-6641-01 18 8384563 8384563 G T PTPRM Missense_Mutation p.C1308F 0.47 deleterious(0) possibly_damaging(0.899) TCGA-G5-6641-01 19 32927392 32927392 G T DPY19L3 Missense_Mutation p.M123I 0.10 tolerated(0.12) benign(0.1) TCGA-G5-6641-01 19 42312886 42312886 G A CEACAM3 Missense_Mutation p.A154T 0.11 tolerated(0.12) benign(0.226) TCGA-G5-6641-01 19 45783945 45783945 G A MARK4 Missense_Mutation p.R410Q 0.09 tolerated(0.07) benign(0.361) TCGA-G5-6641-01 19 49814193 49814193 C T SLC6A16 Missense_Mutation p.G138S 0.36 tolerated(0.09) possibly_damaging(0.789) TCGA-G5-6641-01 19 52273086 52273087 - A FPR2 3'UTR 0.36 TCGA-G5-6641-01 19 52580312 52580312 G T ZNF841 Missense_Mutation p.A14D 0.12 deleterious(0.02) probably_damaging(0.914) TCGA-G5-6641-01 19 52869756 52869756 C T ZNF610 Silent p.N375N 0.21 TCGA-G5-6641-01 19 53652530 53652530 C T ZNF347 Missense_Mutation p.V36M 0.17 deleterious(0) probably_damaging(0.997) TCGA-G5-6641-01 19 54314025 54314025 G A NLRP12 Silent p.F296F 0.68 TCGA-G5-6641-01 19 54848271 54848271 G A LILRA4 Missense_Mutation p.R366C 0.29 tolerated(0.11) benign(0.032) TCGA-G5-6641-01 19 58084262 58084267 TGGCTA - ZNF416 In_Frame_Del p.F335_Q337delinsL 0.12 TCGA-G5-6641-01 1 104115757 104115757 T A AMY2B Missense_Mutation p.C130S 0.07 tolerated(0.27) possibly_damaging(0.576) TCGA-G5-6641-01 1 109154858 109154858 G A FAM102B Missense_Mutation p.R116H 0.11 tolerated(0.12) probably_damaging(0.95) TCGA-G5-6641-01 1 110925571 110925571 C A SLC16A4 Missense_Mutation p.M35I 0.09 tolerated(0.23) benign(0.119) TCGA-G5-6641-01 1 152193158 152193158 G A HRNR Missense_Mutation p.S316L 0.10 unknown(0) TCGA-G5-6641-01 1 152282997 152282997 G A FLG Silent p.H1455H 0.41 TCGA-G5-6641-01 1 155823441 155823441 G A GON4L Missense_Mutation p.S44L 0.36 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-G5-6641-01 1 167096449 167096449 A G DUSP27 Missense_Mutation p.N694S 0.09 tolerated(1) benign(0.004) TCGA-G5-6641-01 1 198492391 198492391 T G ATP6V1G3 3'UTR 0.43 TCGA-G5-6641-01 1 207112594 207112594 G A PIGR Silent p.N86N 0.26 TCGA-G5-6641-01 1 237580424 237580424 G A RYR2 Splice_Site p.X283_splice 0.36 TCGA-G5-6641-01 1 244582174 244582174 C T ADSS Missense_Mutation p.G278D 0.32 deleterious(0) probably_damaging(1) TCGA-G5-6641-01 1 247614573 247614573 G A OR2B11 Nonsense_Mutation p.R238* 0.36 TCGA-G5-6641-01 1 248403031 248403031 G A OR2M4 Silent p.T267T 0.45 TCGA-G5-6641-01 1 248525428 248525428 C A OR2T4 Missense_Mutation p.F182L 0.28 tolerated(0.48) benign(0.03) TCGA-G5-6641-01 1 34112290 34112290 C T CSMD2 Missense_Mutation p.D1538N 0.08 deleterious(0) possibly_damaging(0.888) TCGA-G5-6641-01 1 46976208 46976208 C T DMBX1 Missense_Mutation p.A72V 0.12 deleterious(0.02) probably_damaging(0.938) TCGA-G5-6641-01 1 46977882 46977882 G A DMBX1 Missense_Mutation p.G284R 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.802) TCGA-G5-6641-01 20 13251163 13251163 G C ISM1 Missense_Mutation p.V51L 0.26 tolerated_low_confidence(0.78) benign(0.001) TCGA-G5-6641-01 20 47266636 47266636 G C PREX1 Missense_Mutation p.L976V 0.51 tolerated(0.59) benign(0.035) TCGA-G5-6641-01 20 744287 744287 C T SLC52A3 Missense_Mutation p.V310I 0.24 tolerated(0.11) possibly_damaging(0.692) TCGA-G5-6641-01 21 31993094 31993094 T A KRTAP20-4 Missense_Mutation p.S40T 0.10 benign(0.302) TCGA-G5-6641-01 21 44841904 44841904 T C SIK1 Missense_Mutation p.K96R 0.49 deleterious(0) probably_damaging(0.995) TCGA-G5-6641-01 21 46306324 46306324 C T ITGB2 Missense_Mutation p.A757T 0.15 deleterious(0) probably_damaging(0.991) TCGA-G5-6641-01 22 21141198 21141198 A G SERPIND1 Silent p.E448E 0.12 TCGA-G5-6641-01 22 42524322 42524322 T A CYP2D6 Missense_Mutation p.I233F 0.42 deleterious(0.05) possibly_damaging(0.614) TCGA-G5-6641-01 22 50439538 50439538 G A IL17REL Missense_Mutation p.R28C 0.53 deleterious(0) probably_damaging(0.961) TCGA-G5-6641-01 2 1497600 1497600 G A TPO Missense_Mutation p.G599S 0.15 deleterious(0.03) possibly_damaging(0.595) TCGA-G5-6641-01 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.33 probably_damaging(0.999) TCGA-G5-6641-01 3 128200062 128200062 C T GATA2 Missense_Mutation p.E415K 0.06 tolerated(0.15) probably_damaging(0.955) TCGA-G5-6641-01 3 147114001 147114001 G T ZIC4 Missense_Mutation p.A159E 0.27 deleterious(0.02) benign(0.313) TCGA-G5-6641-01 3 154022661 154022661 G A DHX36 Nonsense_Mutation p.R357* 0.14 TCGA-G5-6641-01 3 15711978 15711978 T C ANKRD28 Silent p.S987S 0.12 TCGA-G5-6641-01 3 160395155 160395155 A G ARL14 Silent p.K7K 0.45 TCGA-G5-6641-01 3 180680830 180680830 A G FXR1 Missense_Mutation p.S384G 0.31 tolerated(0.31) possibly_damaging(0.519) TCGA-G5-6641-01 3 190159226 190159226 C T TMEM207 Splice_Site p.X53_splice 0.13 TCGA-G5-6641-01 3 25832719 25832719 G C OXSM Missense_Mutation p.E70Q 0.06 tolerated(0.49) benign(0.002) TCGA-G5-6641-01 3 38835273 38835273 C T SCN10A Missense_Mutation p.E77K 0.05 tolerated(0.32) benign(0.094) TCGA-G5-6641-01 3 69096730 69096730 T C TMF1 Missense_Mutation p.K376E 0.11 tolerated_low_confidence(0.27) benign(0.003) TCGA-G5-6641-01 3 78683158 78683158 G T ROBO1 Silent p.I1136I 0.10 TCGA-G5-6641-01 4 186544776 186544776 C T SORBS2 Missense_Mutation p.D699N 0.42 tolerated(0.15) probably_damaging(0.998) TCGA-G5-6641-01 4 69696457 69696457 A G UGT2B10 Missense_Mutation p.T483A 0.29 deleterious(0.03) benign(0.17) TCGA-G5-6641-01 4 7398082 7398082 G A SORCS2 Missense_Mutation p.R183Q 0.31 deleterious(0) possibly_damaging(0.889) TCGA-G5-6641-01 5 112175752 112175752 T - APC Frame_Shift_Del p.L1488Yfs*19 0.38 TCGA-G5-6641-01 5 137802688 137802688 G A EGR1 Missense_Mutation p.A184T 0.41 tolerated(0.08) benign(0.078) TCGA-G5-6641-01 5 140176193 140176193 C T PCDHA2 Silent p.N548N 0.43 TCGA-G5-6641-01 5 141303446 141303446 G A KIAA0141 5'UTR 0.17 TCGA-G5-6641-01 5 148758826 148758826 G A IL17B 5'UTR 0.35 TCGA-G5-6641-01 5 19473693 19473693 T A CDH18 Missense_Mutation p.D672V 0.24 deleterious(0) possibly_damaging(0.767) TCGA-G5-6641-01 5 195217 195217 G A LRRC14B Missense_Mutation p.E432K 0.19 tolerated(0.07) possibly_damaging(0.694) TCGA-G5-6641-01 5 36680546 36680546 G A SLC1A3 Missense_Mutation p.V382M 0.10 tolerated(0.06) probably_damaging(0.975) TCGA-G5-6641-01 5 56778092 56778092 C T ACTBL2 Missense_Mutation p.R148Q 0.44 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-G5-6641-01 6 135787317 135787317 C T AHI1 Silent p.K128K 0.15 TCGA-G5-6641-01 6 136597485 136597485 T A BCLAF1 Missense_Mutation p.K393M 0.09 deleterious(0.03) possibly_damaging(0.891) TCGA-G5-6641-01 6 138200292 138200292 C T TNFAIP3 Silent p.L570L 0.46 TCGA-G5-6641-01 6 138200296 138200296 C A TNFAIP3 Silent p.R572R 0.48 TCGA-G5-6641-01 6 153042915 153042915 G A MYCT1 Missense_Mutation p.G79R 0.29 deleterious(0) probably_damaging(0.951) TCGA-G5-6641-01 6 159672512 159672512 C T FNDC1 Silent p.H1671H 0.16 TCGA-G5-6641-01 6 24667006 24667006 A T TDP2 Missense_Mutation p.C29S 0.34 deleterious(0.02) possibly_damaging(0.666) TCGA-G5-6641-01 6 30585650 30585650 C G MRPS18B Missense_Mutation p.A3G 0.08 deleterious_low_confidence(0) possibly_damaging(0.49) TCGA-G5-6641-01 6 35987297 35987297 C T SLC26A8 Missense_Mutation p.R63H 0.14 tolerated(0.06) benign(0.052) TCGA-G5-6641-01 6 76731907 76731907 G A IMPG1 Missense_Mutation p.P198S 0.18 tolerated(0.13) benign(0.168) TCGA-G5-6641-01 6 87966201 87966201 G C ZNF292 Missense_Mutation p.G952R 0.36 tolerated_low_confidence(0.55) benign(0.003) TCGA-G5-6641-01 7 103183203 103183203 G A RELN Nonsense_Mutation p.R2216* 0.06 TCGA-G5-6641-01 7 139727183 139727183 C T PARP12 Silent p.S507S 0.36 TCGA-G5-6641-01 7 141764186 141764186 T A MGAM Missense_Mutation p.L1450M 0.21 deleterious(0) benign(0.36) TCGA-G5-6641-01 7 149498993 149498993 G A SSPO RNA 0.39 TCGA-G5-6641-01 7 151167736 151167736 A T RHEB Missense_Mutation p.V128E 0.15 tolerated(0.58) benign(0.011) TCGA-G5-6641-01 7 21654801 21654801 G A DNAH11 Missense_Mutation p.V1308M 0.12 probably_damaging(0.943) TCGA-G5-6641-01 7 4841315 4841315 T C RADIL Silent p.G937G 0.27 TCGA-G5-6641-01 7 63808563 63808563 C G ZNF736 Missense_Mutation p.L108V 0.35 tolerated(0.19) benign(0.301) TCGA-G5-6641-01 7 92731562 92731562 A G SAMD9 Silent p.N1283N 0.24 TCGA-G5-6641-01 7 95750410 95750410 C G SLC25A13 3'UTR 0.18 TCGA-G5-6641-01 8 15621860 15621860 T C TUSC3 3'UTR 0.08 TCGA-G5-6641-01 8 24813787 24813787 G A CTD-2168K21.2 5'Flank 0.78 TCGA-G5-6641-01 8 33318909 33318909 A G FUT10 Missense_Mutation p.F21S 0.14 deleterious(0.03) benign(0.227) TCGA-G5-6641-01 8 57079935 57079935 C T PLAG1 Missense_Mutation p.E124K 0.39 tolerated(0.07) probably_damaging(0.974) TCGA-G5-6641-01 9 102768907 102768907 G A ERP44 Silent p.A299A 0.23 TCGA-G5-6641-01 9 113341377 113341377 C T SVEP1 Silent p.K149K 0.52 TCGA-G5-6641-01 9 125288888 125288888 G A OR1N1 Missense_Mutation p.R229C 0.51 deleterious(0) benign(0) TCGA-G5-6641-01 9 139272180 139272180 G A SNAPC4 Missense_Mutation p.R1367W 0.35 deleterious(0) probably_damaging(0.999) TCGA-G5-6641-01 9 140160820 140160820 C T NELFB Missense_Mutation p.A346V 0.43 deleterious(0.01) benign(0.111) TCGA-G5-6641-01 9 140707887 140707887 G A EHMT1 Missense_Mutation p.V1029M 0.50 deleterious(0) possibly_damaging(0.719) TCGA-G5-6641-01 9 86506352 86506352 T C KIF27 Missense_Mutation p.N556S 0.10 tolerated(0.53) benign(0.006) TCGA-G5-6641-01 X 123630962 123630962 A C TENM1 Nonsense_Mutation p.L1200* 0.10 TCGA-G5-6641-01 X 135443625 135443625 T C GPR112 Missense_Mutation p.C2386R 0.08 deleterious(0) probably_damaging(0.998) TCGA-G5-6641-01 X 31090051 31090051 G A FTHL17 Missense_Mutation p.S7L 0.17 tolerated(0.06) benign(0.117) TCGA-G5-6641-01 Y 3447837 3447837 G A TGIF2LY Silent p.P184P 0.74