sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-3B-A9HI-01 11 22391670 22391670 T C SLC17A6 Missense_Mutation p.F326S 0.19 deleterious(0) possibly_damaging(0.542) TCGA-3B-A9HI-01 11 5969021 5969021 G A OR56A3 Missense_Mutation p.A149T 0.20 tolerated(1) benign(0.031) TCGA-3B-A9HI-01 13 113153364 113153364 T A TUBGCP3 Missense_Mutation p.I815F 0.23 deleterious(0.05) benign(0) TCGA-3B-A9HI-01 14 64445579 64445579 C T SYNE2 Silent p.N472N 0.30 TCGA-3B-A9HI-01 15 20588706 20588706 T C HERC2P3 RNA 0.22 TCGA-3B-A9HI-01 15 75305127 75305127 C T SCAMP5 Silent p.R39R 0.21 TCGA-3B-A9HI-01 16 1840734 1840734 A G IGFALS Missense_Mutation p.V600A 0.30 deleterious(0) possibly_damaging(0.507) TCGA-3B-A9HI-01 16 30673883 30673883 C T FBRS Missense_Mutation p.S253L 0.04 possibly_damaging(0.514) TCGA-3B-A9HI-01 16 53191180 53191180 A G CHD9 Silent p.Q393Q 0.57 TCGA-3B-A9HI-01 17 35300104 35300104 C T LHX1 Silent p.G299G 0.18 TCGA-3B-A9HI-01 17 35771413 35771413 G T TADA2A 5'UTR 0.15 TCGA-3B-A9HI-01 17 45735974 45735974 C T KPNB1 Missense_Mutation p.T195M 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-3B-A9HI-01 18 24035607 24035607 C A KCTD1 3'UTR 0.13 TCGA-3B-A9HI-01 18 46860165 46860165 A C DYM Missense_Mutation p.C185G 0.35 deleterious(0.01) benign(0.124) TCGA-3B-A9HI-01 19 19260125 19260125 C T MEF2B Silent p.Q56Q 0.14 TCGA-3B-A9HI-01 19 2769069 2769080 TGAGCCCAGAAG - SGTA 5'UTR 0.26 TCGA-3B-A9HI-01 19 34263881 34263881 G A CHST8 Silent p.S396S 0.42 TCGA-3B-A9HI-01 19 4430604 4430604 A G CHAF1A Missense_Mutation p.H638R 0.23 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HI-01 19 50912435 50912435 C T POLD1 Missense_Mutation p.S650L 0.30 deleterious(0.02) benign(0.13) TCGA-3B-A9HI-01 19 54307288 54307288 T C NLRP12 Missense_Mutation p.T835A 0.06 tolerated(0.35) benign(0.246) TCGA-3B-A9HI-01 19 54409605 54409605 C A PRKCG Nonsense_Mutation p.S600* 0.11 TCGA-3B-A9HI-01 1 114308661 114308661 T - RSBN1 Frame_Shift_Del p.S784Vfs*29 0.21 TCGA-3B-A9HI-01 1 155263113 155263113 C T PKLR Missense_Mutation p.A431T 0.08 tolerated(0.12) probably_damaging(0.955) TCGA-3B-A9HI-01 1 173907552 173907552 A T RC3H1 3'UTR 0.06 TCGA-3B-A9HI-01 1 204125025 204125025 C G REN Missense_Mutation p.G328R 0.45 deleterious(0.03) benign(0.424) TCGA-3B-A9HI-01 1 228451874 228451874 C T OBSCN Missense_Mutation p.A1732V 0.22 benign(0.076) TCGA-3B-A9HI-01 1 31210526 31210526 C T LAPTM5 Silent p.E177E 0.19 TCGA-3B-A9HI-01 1 55523034 55523034 G T PCSK9 Missense_Mutation p.D343Y 0.23 deleterious(0) probably_damaging(1) TCGA-3B-A9HI-01 21 46925093 46925093 C A COL18A1 Missense_Mutation p.P1152T 0.15 probably_damaging(0.999) TCGA-3B-A9HI-01 22 19055725 19055725 C T DGCR2 Silent p.E72E 0.37 TCGA-3B-A9HI-01 2 113974955 113974955 A T PAX8 3'UTR 0.35 TCGA-3B-A9HI-01 2 168104932 168104932 C T XIRP2 Missense_Mutation p.L2344F 0.21 benign(0.226) TCGA-3B-A9HI-01 2 85780578 85780578 C T GGCX Missense_Mutation p.C311Y 0.29 deleterious(0) possibly_damaging(0.848) TCGA-3B-A9HI-01 3 14106300 14106300 C A TPRXL Missense_Mutation p.S208R 0.09 unknown(0) TCGA-3B-A9HI-01 3 25502747 25502747 C G RARB Missense_Mutation p.P74R 0.15 deleterious(0.04) probably_damaging(0.994) TCGA-3B-A9HI-01 3 44541497 44541497 G A ZNF852 Missense_Mutation p.L258F 0.30 deleterious(0) probably_damaging(0.968) TCGA-3B-A9HI-01 4 177146478 177146478 G A ASB5 Nonsense_Mutation p.R71* 0.09 TCGA-3B-A9HI-01 5 156482487 156482487 G T HAVCR1 Missense_Mutation p.P35H 0.19 deleterious(0) probably_damaging(0.971) TCGA-3B-A9HI-01 5 167929104 167929104 G C RARS Missense_Mutation p.D351H 0.14 tolerated(0.05) possibly_damaging(0.528) TCGA-3B-A9HI-01 5 172362219 172362219 G A ERGIC1 Missense_Mutation p.R224H 0.15 tolerated(0.06) benign(0.212) TCGA-3B-A9HI-01 5 179564684 179564684 C A RASGEF1C Missense_Mutation p.S69I 0.19 deleterious(0) possibly_damaging(0.878) TCGA-3B-A9HI-01 5 482667 482667 A T SLC9A3 Missense_Mutation p.F451Y 0.09 deleterious(0) possibly_damaging(0.77) TCGA-3B-A9HI-01 5 76332520 76332520 A G AGGF1 Missense_Mutation p.H219R 0.33 deleterious(0.01) benign(0.005) TCGA-3B-A9HI-01 6 26444299 26444300 GG - BTN3A3 Frame_Shift_Del p.W67Cfs*53 0.15 TCGA-3B-A9HI-01 7 149461979 149461979 T C ZNF467 Missense_Mutation p.T538A 0.14 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HI-01 7 27145864 27145864 T C HOXA3 3'UTR 0.05 TCGA-3B-A9HI-01 7 38403044 38403044 G A TRGV2 5'UTR 0.06 TCGA-3B-A9HI-01 7 53103958 53103958 C T POM121L12 Silent p.F198F 0.14 TCGA-3B-A9HI-01 7 7571327 7571327 C G COL28A1 Missense_Mutation p.W111C 0.20 deleterious(0) probably_damaging(1) TCGA-3B-A9HI-01 7 76912006 76912006 G A CCDC146 Missense_Mutation p.M684I 0.15 tolerated(0.1) benign(0.002) TCGA-3B-A9HI-01 8 57077131 57077131 A T PLAG1 3'UTR 0.05 TCGA-3B-A9HI-01 9 100849720 100849720 G T TRIM14 3'UTR 0.45 TCGA-3B-A9HI-01 9 33470084 33470087 CAGT - NOL6 Frame_Shift_Del p.T161Lfs*21 0.27 TCGA-3B-A9HI-01 X 55046847 55046847 C A ALAS2 Silent p.L243L 0.31 TCGA-3B-A9HI-01 X 76938266 76938266 T - ATRX Frame_Shift_Del p.M828* 0.44 TCGA-3B-A9HJ-01 10 127585174 127585174 C A FANK1 5'UTR 0.12 TCGA-3B-A9HJ-01 11 92616273 92616273 C T FAT3 Silent p.D4217D 0.08 TCGA-3B-A9HJ-01 12 69113363 69113363 G C NUP107 Missense_Mutation p.E394Q 0.04 tolerated(0.1) probably_damaging(1) TCGA-3B-A9HJ-01 12 69113394 69113394 G C NUP107 Missense_Mutation p.R404T 0.05 deleterious(0) probably_damaging(1) TCGA-3B-A9HJ-01 12 69742294 69742294 G A LYZ Missense_Mutation p.D36N 0.07 deleterious(0.01) benign(0.045) TCGA-3B-A9HJ-01 16 29994547 29994547 A T TAOK2 Missense_Mutation p.E385V 0.13 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-3B-A9HJ-01 19 13919958 13919958 G A ZSWIM4 Silent p.Q312Q 0.15 TCGA-3B-A9HJ-01 19 6916300 6916300 G A EMR1 Silent p.E447E 0.07 TCGA-3B-A9HJ-01 19 6916370 6916370 G C EMR1 Missense_Mutation p.E471Q 0.09 tolerated(0.26) benign(0.146) TCGA-3B-A9HJ-01 19 6934997 6934997 G A EMR1 Splice_Site p.X764_splice 0.06 TCGA-3B-A9HJ-01 19 9324756 9324756 C T OR7D4 Missense_Mutation p.G253E 0.13 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HJ-01 19 9325248 9325248 C T OR7D4 Missense_Mutation p.S89N 0.11 tolerated(0.35) benign(0.003) TCGA-3B-A9HJ-01 1 110582473 110582473 C T STRIP1 Intron 0.13 TCGA-3B-A9HJ-01 1 171672557 171672557 G T VAMP4 3'UTR 0.19 TCGA-3B-A9HJ-01 20 44044770 44044770 G A PIGT 5'UTR 0.06 TCGA-3B-A9HJ-01 20 62200252 62200252 C T HELZ2 Missense_Mutation p.V397I 0.14 tolerated(1) benign(0) TCGA-3B-A9HJ-01 22 37887235 37887235 C T CARD10 Missense_Mutation p.G1021S 0.06 tolerated_low_confidence(0.08) benign(0.048) TCGA-3B-A9HJ-01 2 131130807 131130807 C T PTPN18 3'UTR 0.09 TCGA-3B-A9HJ-01 2 54856462 54856462 C T SPTBN1 Nonsense_Mutation p.Q731* 0.15 TCGA-3B-A9HJ-01 2 89246923 89246923 T A IGKV1-5 Missense_Mutation p.R83W 0.05 deleterious(0.01) benign(0.207) TCGA-3B-A9HJ-01 4 156784607 156784607 A G ASIC5 Silent p.L114L 0.05 TCGA-3B-A9HJ-01 5 67597524 67597524 G T PIK3R1 3'UTR 0.12 TCGA-3B-A9HJ-01 6 31611871 31611871 G A BAG6 Silent p.V522V 0.13 TCGA-3B-A9HJ-01 7 128035057 128035057 G A IMPDH1 Missense_Mutation p.T479M 0.07 deleterious(0.01) possibly_damaging(0.743) TCGA-3B-A9HJ-01 7 150649695 150649695 C T KCNH2 Missense_Mutation p.V459M 0.08 deleterious(0) probably_damaging(1) TCGA-3B-A9HJ-01 9 140395345 140395345 C T PNPLA7 Missense_Mutation p.A519T 0.06 tolerated(0.06) benign(0.005) TCGA-3B-A9HJ-01 9 36083531 36083531 A G RECK Silent p.Q203Q 0.10 TCGA-3B-A9HJ-01 9 36246219 36246219 A G GNE Missense_Mutation p.I173T 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-3B-A9HJ-01 X 146353918 146353918 G T MIR510 RNA 0.12 TCGA-3B-A9HL-01 10 105944776 105944776 C T WDR96 Nonsense_Mutation p.W713* 0.29 TCGA-3B-A9HL-01 10 119307608 119307608 G T EMX2 Missense_Mutation p.K208N 0.27 deleterious(0) probably_damaging(1) TCGA-3B-A9HL-01 10 119768472 119768472 T A RAB11FIP2 3'UTR 0.26 TCGA-3B-A9HL-01 10 121565903 121565903 G A INPP5F Missense_Mutation p.E451K 0.17 tolerated(0.67) benign(0.018) TCGA-3B-A9HL-01 11 18369142 18369142 G C GTF2H1 Missense_Mutation p.G282A 0.21 deleterious(0.01) probably_damaging(0.969) TCGA-3B-A9HL-01 11 1857344 1857344 G T SYT8 Intron 0.15 TCGA-3B-A9HL-01 12 58121452 58121452 C T AGAP2-AS1 Missense_Mutation p.S226F 0.18 benign(0) TCGA-3B-A9HL-01 12 58121737 58121737 C T AGAP2 Missense_Mutation p.E917K 0.19 deleterious(0.03) benign(0.337) TCGA-3B-A9HL-01 12 68551748 68551748 A T IFNG Missense_Mutation p.F104Y 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-3B-A9HL-01 12 69080742 69080742 A G NUP107 5'UTR 0.03 TCGA-3B-A9HL-01 12 71955560 71955560 G C LGR5 Splice_Site p.X262_splice 0.76 TCGA-3B-A9HL-01 12 95434360 95434360 G C NR2C1 Missense_Mutation p.S382C 0.31 tolerated(0.05) probably_damaging(0.999) TCGA-3B-A9HL-01 13 109438081 109438081 G A MYO16 Silent p.L180L 0.42 TCGA-3B-A9HL-01 14 58604835 58604835 C G C14orf37 Missense_Mutation p.L414F 0.19 deleterious(0.01) possibly_damaging(0.765) TCGA-3B-A9HL-01 14 76330059 76330059 G A TTLL5 Missense_Mutation p.V1126M 0.36 tolerated(0.06) benign(0.313) TCGA-3B-A9HL-01 15 100272106 100272106 C T LYSMD4 Missense_Mutation p.G4E 0.03 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-3B-A9HL-01 15 52497276 52497276 G A MYO5C Missense_Mutation p.R1536C 0.42 deleterious(0) probably_damaging(1) TCGA-3B-A9HL-01 15 63335009 63335009 G C TPM1 5'UTR 0.40 TCGA-3B-A9HL-01 15 65499236 65499236 C A CILP Missense_Mutation p.G103V 0.29 tolerated(0.15) benign(0.032) TCGA-3B-A9HL-01 16 23540873 23540873 C A EARS2 Missense_Mutation p.Q434H 0.22 deleterious(0) benign(0.043) TCGA-3B-A9HL-01 16 49524939 49524939 C T ZNF423 3'UTR 0.06 TCGA-3B-A9HL-01 16 66785214 66785214 C A DYNC1LI2 Missense_Mutation p.R48M 0.18 deleterious(0.05) possibly_damaging(0.879) TCGA-3B-A9HL-01 16 67970665 67970665 A G PSMB10 5'UTR 0.11 TCGA-3B-A9HL-01 17 10367818 10367818 T C MYH4 Missense_Mutation p.K207E 0.24 tolerated(0.09) benign(0.403) TCGA-3B-A9HL-01 17 39973444 39973444 G T FKBP10 Missense_Mutation p.S127I 0.43 deleterious(0.04) possibly_damaging(0.564) TCGA-3B-A9HL-01 17 40705302 40705302 C T HSD17B1 Silent p.D86D 0.45 TCGA-3B-A9HL-01 17 42290278 42290278 G A UBTF Missense_Mutation p.A190V 0.43 tolerated(0.51) benign(0.005) TCGA-3B-A9HL-01 17 61987059 61987059 C T CSHL1 3'Flank 0.08 TCGA-3B-A9HL-01 17 74077302 74077302 G T EXOC7 3'Flank 0.17 TCGA-3B-A9HL-01 18 34297864 34297864 G T FHOD3 Missense_Mutation p.R693L 0.44 tolerated(0.31) probably_damaging(0.993) TCGA-3B-A9HL-01 19 44130154 44130154 C G CADM4 Splice_Site p.X222_splice 0.22 TCGA-3B-A9HL-01 19 52097498 52097498 T G AC018755.1 Missense_Mutation p.N26T 0.47 benign(0.102) TCGA-3B-A9HL-01 1 114281367 114281367 C T PHTF1 Missense_Mutation p.V53I 0.39 tolerated(0.06) possibly_damaging(0.787) TCGA-3B-A9HL-01 1 116574007 116574007 G A SLC22A15 Missense_Mutation p.R250H 0.32 deleterious(0) probably_damaging(1) TCGA-3B-A9HL-01 1 117087035 117087035 C T CD58 Missense_Mutation p.G88S 0.30 deleterious(0) probably_damaging(1) TCGA-3B-A9HL-01 1 151384810 151384810 C T POGZ Missense_Mutation p.D581N 0.39 tolerated(0.59) possibly_damaging(0.684) TCGA-3B-A9HL-01 1 158368481 158368481 T C OR10T2 Missense_Mutation p.Y259C 0.41 deleterious(0) probably_damaging(0.977) TCGA-3B-A9HL-01 21 43815480 43815480 C T TMPRSS3 Missense_Mutation p.R16Q 0.22 tolerated_low_confidence(0.17) possibly_damaging(0.573) TCGA-3B-A9HL-01 22 38245578 38245578 G A EIF3L Intron 0.08 TCGA-3B-A9HL-01 22 46931746 46931746 G A CELSR1 Missense_Mutation p.A441V 0.09 deleterious(0.01) probably_damaging(1) TCGA-3B-A9HL-01 2 179429737 179429737 G A TTN Missense_Mutation p.T27041M 0.32 TCGA-3B-A9HL-01 2 210642248 210642248 G A UNC80 Missense_Mutation p.V189M 0.34 probably_damaging(0.991) TCGA-3B-A9HL-01 3 12778114 12778114 G A TMEM40 Silent p.F194F 0.34 TCGA-3B-A9HL-01 3 13612954 13612954 C T FBLN2 Missense_Mutation p.L367F 0.38 tolerated(0.66) benign(0.008) TCGA-3B-A9HL-01 3 182583358 182583358 G A ATP11B Missense_Mutation p.E439K 0.17 tolerated(0.15) possibly_damaging(0.794) TCGA-3B-A9HL-01 3 185361830 185361830 G A IGF2BP2 3'UTR 0.07 TCGA-3B-A9HL-01 4 147628647 147628647 C T TTC29 Missense_Mutation p.E463K 0.28 tolerated_low_confidence(0.12) benign(0.001) TCGA-3B-A9HL-01 4 80828146 80828146 A C ANTXR2 3'UTR 0.38 TCGA-3B-A9HL-01 5 118539113 118539113 G A DMXL1 Silent p.K2615K 0.18 TCGA-3B-A9HL-01 5 134871035 134871035 G C NEUROG1 Missense_Mutation p.R116G 0.49 deleterious(0) probably_damaging(1) TCGA-3B-A9HL-01 5 90106134 90106134 T C GPR98 Silent p.D5019D 0.28 TCGA-3B-A9HL-01 6 10404963 10404963 G A TFAP2A Missense_Mutation p.S181F 0.07 tolerated(0.07) possibly_damaging(0.794) TCGA-3B-A9HL-01 6 119670888 119670888 G A MAN1A1 5'UTR 0.25 TCGA-3B-A9HL-01 6 31748319 31748319 G T VARS Silent p.R942R 0.16 TCGA-3B-A9HL-01 6 42583801 42583801 G A UBR2 Silent p.K385K 0.09 TCGA-3B-A9HL-01 6 42583818 42583818 G A UBR2 Missense_Mutation p.R391Q 0.10 tolerated(0.54) benign(0.002) TCGA-3B-A9HL-01 7 43927372 43927372 C T URGCP Intron 0.42 TCGA-3B-A9HL-01 7 74988500 74988500 C T STAG3L1 RNA 0.27 TCGA-3B-A9HL-01 8 104336784 104336784 A G FZD6 Silent p.T150T 0.23 TCGA-3B-A9HL-01 9 137717708 137717708 C T COL5A1 Silent p.A1675A 0.29 TCGA-3B-A9HL-01 9 34371506 34371506 G A KIAA1161 Missense_Mutation p.P445L 0.60 deleterious(0.02) probably_damaging(0.984) TCGA-3B-A9HL-01 9 98239127 98239127 G C PTCH1 Missense_Mutation p.L506V 0.35 deleterious(0.02) probably_damaging(0.919) TCGA-3B-A9HL-01 X 70518334 70518334 C T NONO Missense_Mutation p.R383W 0.07 deleterious(0) benign(0.008) TCGA-3B-A9HL-01 X 76890194 76890194 C T ATRX Missense_Mutation p.G1567D 0.69 probably_damaging(0.999) TCGA-3B-A9HO-01 10 116064626 116064626 T - AFAP1L2 Frame_Shift_Del p.H379Pfs*91 0.19 TCGA-3B-A9HO-01 11 1098695 1098695 C T MUC2 Silent p.C2355C 0.14 TCGA-3B-A9HO-01 11 36472837 36472837 C A PRR5L Missense_Mutation p.L222I 0.12 deleterious(0.05) possibly_damaging(0.701) TCGA-3B-A9HO-01 11 36598138 36598138 C G RAG1 3'UTR 0.05 TCGA-3B-A9HO-01 12 111064246 111064246 G C TCTN1 Missense_Mutation p.E141Q 0.05 tolerated(0.23) benign(0.003) TCGA-3B-A9HO-01 12 112167686 112167686 G A ACAD10 Missense_Mutation p.M471I 0.09 deleterious(0.01) probably_damaging(0.922) TCGA-3B-A9HO-01 12 11461420 11461420 G A PRB4 Missense_Mutation p.P166L 0.24 tolerated_low_confidence(0.79) unknown(0) TCGA-3B-A9HO-01 12 117662836 117662836 C G NOS1 Missense_Mutation p.D1305H 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-3B-A9HO-01 12 132393445 132393445 G A ULK1 Missense_Mutation p.D165N 0.09 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HO-01 12 132399938 132399938 G A ULK1 Silent p.E527E 0.15 TCGA-3B-A9HO-01 12 20522801 20522801 C T PDE3A Missense_Mutation p.L195F 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-3B-A9HO-01 12 49121256 49121256 G A LINC00935 5'UTR 0.03 TCGA-3B-A9HO-01 12 49121292 49121292 G A LINC00935 Missense_Mutation p.G10E 0.03 probably_damaging(0.999) TCGA-3B-A9HO-01 12 52385793 52385793 C T ACVR1B Intron 0.25 TCGA-3B-A9HO-01 12 88535026 88535026 C T CEP290 Missense_Mutation p.R20H 0.02 benign(0.006) TCGA-3B-A9HO-01 12 90028570 90028570 G A ATP2B1 Missense_Mutation p.P258S 0.05 deleterious(0) benign(0.313) TCGA-3B-A9HO-01 12 93244995 93244995 C T EEA1 Silent p.L230L 0.42 TCGA-3B-A9HO-01 12 93246049 93246049 C T EEA1 Missense_Mutation p.E182K 0.38 deleterious(0.01) probably_damaging(0.933) TCGA-3B-A9HO-01 12 93246073 93246073 C T EEA1 Splice_Site p.X174_splice 0.38 TCGA-3B-A9HO-01 12 93246699 93246699 G C EEA1 Missense_Mutation p.T170S 0.37 tolerated(0.29) probably_damaging(0.998) TCGA-3B-A9HO-01 13 96511890 96511890 T A UGGT2 Silent p.P1260P 0.18 TCGA-3B-A9HO-01 13 99043120 99043120 G A FARP1 Silent p.K358K 0.15 TCGA-3B-A9HO-01 14 36840954 36840954 A G DPPA3P2 RNA 0.15 TCGA-3B-A9HO-01 14 70925388 70925388 G A ADAM21 Missense_Mutation p.G391E 0.08 tolerated(0.14) possibly_damaging(0.886) TCGA-3B-A9HO-01 14 89069266 89069266 G A ZC3H14 Missense_Mutation p.E537K 0.16 tolerated(0.1) probably_damaging(0.997) TCGA-3B-A9HO-01 15 102346298 102346298 A T OR4F6 Missense_Mutation p.I126L 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.696) TCGA-3B-A9HO-01 15 98514407 98514407 T G ARRDC4 Missense_Mutation p.F416C 0.05 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-3B-A9HO-01 16 88594452 88594452 G T ZFPM1 Missense_Mutation p.W173L 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-3B-A9HO-01 17 6381307 6381307 G A PITPNM3 Silent p.I296I 0.15 TCGA-3B-A9HO-01 17 72347018 72347018 G A AC103809.2 Missense_Mutation p.S98L 0.15 possibly_damaging(0.514) TCGA-3B-A9HO-01 18 14478406 14478406 G A CXADRP3 RNA 0.24 TCGA-3B-A9HO-01 18 14542956 14542956 A T POTEC Missense_Mutation p.C64S 0.06 deleterious_low_confidence(0) benign(0) TCGA-3B-A9HO-01 19 15580569 15580569 A G PGLYRP2 Silent p.S505S 0.43 TCGA-3B-A9HO-01 19 2254213 2254213 C G JSRP1 Missense_Mutation p.G79R 0.06 deleterious(0) probably_damaging(0.991) TCGA-3B-A9HO-01 19 40397966 40397966 C T FCGBP Splice_Site p.X2334_splice 0.05 TCGA-3B-A9HO-01 19 42482338 42482338 C T ATP1A3 Missense_Mutation p.D604N 0.58 deleterious(0.02) probably_damaging(0.996) TCGA-3B-A9HO-01 19 5082456 5082456 G A KDM4B Missense_Mutation p.A287T 0.19 possibly_damaging(0.726) TCGA-3B-A9HO-01 19 57646733 57646733 T G ZIM3 Missense_Mutation p.K324N 0.11 tolerated(0.14) probably_damaging(0.969) TCGA-3B-A9HO-01 19 929874 929874 G T ARID3A Missense_Mutation p.D116Y 0.21 deleterious_low_confidence(0) possibly_damaging(0.841) TCGA-3B-A9HO-01 1 149288120 149288120 C T RP11-403I13.8 RNA 0.12 TCGA-3B-A9HO-01 1 161476226 161476226 G A FCGR2A Missense_Mutation p.S70N 0.28 tolerated(1) benign(0.008) TCGA-3B-A9HO-01 1 161476328 161476328 G A FCGR2A Missense_Mutation p.C104Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HO-01 20 40709469 40709469 G T PTPRT 3'UTR 0.17 TCGA-3B-A9HO-01 20 60776191 60776191 C A MTG2 3'UTR 0.38 TCGA-3B-A9HO-01 21 31986098 31986098 G A KRTAP6-1 Silent p.F42F 0.25 TCGA-3B-A9HO-01 21 45821738 45821738 C G TRPM2 Missense_Mutation p.I832M 0.34 deleterious(0.01) possibly_damaging(0.878) TCGA-3B-A9HO-01 22 25019094 25019094 G C GGT1 Missense_Mutation p.D252H 0.13 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HO-01 22 50945526 50945526 G T LMF2 Intron 0.18 TCGA-3B-A9HO-01 2 135884187 135884188 - T RAB3GAP1 Frame_Shift_Ins p.R313* 0.20 TCGA-3B-A9HO-01 2 179474099 179474099 G T TTN Missense_Mutation p.P17313Q 0.15 TCGA-3B-A9HO-01 2 202514863 202514863 G A MPP4 Silent p.Y469Y 0.06 TCGA-3B-A9HO-01 3 122631054 122631054 G A SEMA5B Missense_Mutation p.T1008M 0.19 deleterious(0.05) probably_damaging(0.99) TCGA-3B-A9HO-01 3 50645127 50645127 C T CISH Missense_Mutation p.V247I 0.12 tolerated(0.22) benign(0.363) TCGA-3B-A9HO-01 3 50645149 50645149 G T CISH Missense_Mutation p.S239R 0.20 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HO-01 4 135248568 135248568 C T RP11-400D2.2 RNA 0.25 TCGA-3B-A9HO-01 4 25384985 25384985 T A ANAPC4 Missense_Mutation p.M113K 0.16 deleterious(0) benign(0.432) TCGA-3B-A9HO-01 5 10415649 10415649 C A MARCH6 Silent p.I672I 0.04 TCGA-3B-A9HO-01 5 121188023 121188023 A T FTMT Missense_Mutation p.E122V 0.13 deleterious(0) probably_damaging(0.991) TCGA-3B-A9HO-01 5 140209016 140209016 A C PCDHA6 Missense_Mutation p.D447A 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-3B-A9HO-01 5 9202171 9202171 C A SEMA5A Silent p.L276L 0.17 TCGA-3B-A9HO-01 6 126307597 126307597 G T TRMT11 5'UTR 0.17 TCGA-3B-A9HO-01 6 159187344 159187344 A C EZR 3'UTR 0.19 TCGA-3B-A9HO-01 6 167754992 167754992 C A TTLL2 Missense_Mutation p.T535N 0.21 tolerated(0.35) benign(0.022) TCGA-3B-A9HO-01 6 27778078 27778078 C G HIST1H3H Missense_Mutation p.A76G 0.07 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-3B-A9HO-01 6 74078539 74078539 C G OOEP Missense_Mutation p.D140H 0.10 tolerated(0.14) benign(0.263) TCGA-3B-A9HO-01 7 121944152 121944152 C T FEZF1 Missense_Mutation p.A114T 0.20 tolerated_low_confidence(0.15) benign(0.062) TCGA-3B-A9HO-01 7 142920071 142920071 C T TAS2R40 Silent p.N300N 0.12 TCGA-3B-A9HO-01 8 52321291 52321291 G C PXDNL Missense_Mutation p.L965V 0.48 tolerated(0.22) possibly_damaging(0.536) TCGA-3B-A9HO-01 8 52321309 52321309 G A PXDNL Missense_Mutation p.H959Y 0.46 tolerated(0.62) benign(0.049) TCGA-3B-A9HO-01 8 52321339 52321339 G A PXDNL Nonsense_Mutation p.Q949* 0.51 TCGA-3B-A9HO-01 8 52321402 52321402 G C PXDNL Missense_Mutation p.P928A 0.51 tolerated(0.69) benign(0.008) TCGA-3B-A9HO-01 8 52321456 52321456 G A PXDNL Missense_Mutation p.L910F 0.48 deleterious(0.04) probably_damaging(0.991) TCGA-3B-A9HO-01 8 52321463 52321463 G T PXDNL Silent p.S907S 0.41 TCGA-3B-A9HO-01 8 52321601 52321601 G C PXDNL Silent p.L861L 0.59 TCGA-3B-A9HO-01 8 52321892 52321892 G A PXDNL Silent p.P764P 0.55 TCGA-3B-A9HO-01 8 52322097 52322097 G A PXDNL Missense_Mutation p.S696F 0.59 deleterious(0) probably_damaging(0.99) TCGA-3B-A9HO-01 8 68992747 68992747 G A PREX2 Missense_Mutation p.G571E 0.12 tolerated(0.12) probably_damaging(0.916) TCGA-3B-A9HO-01 9 138678245 138678245 C T KCNT1 Missense_Mutation p.A1127V 0.33 tolerated(0.14) benign(0.029) TCGA-3B-A9HO-01 9 91690129 91690129 C A SHC3 Missense_Mutation p.M208I 0.13 tolerated(0.29) benign(0.009) TCGA-3B-A9HO-01 9 91964806 91964806 C T SECISBP2 Silent p.H618H 0.23 TCGA-3B-A9HO-01 X 10176413 10176413 G A CLCN4 Missense_Mutation p.R391H 0.08 deleterious(0.01) possibly_damaging(0.758) TCGA-3B-A9HO-01 X 150577464 150577464 C T VMA21 3'UTR 0.51 TCGA-3B-A9HO-01 X 26158106 26158106 C T MAGEB18 Missense_Mutation p.T335M 0.70 tolerated(0.49) benign(0.002) TCGA-3B-A9HP-01 10 104679747 104679747 G A CNNM2 Missense_Mutation p.D504N 0.55 deleterious(0) probably_damaging(0.936) TCGA-3B-A9HP-01 10 61413832 61413832 T G SLC16A9 Missense_Mutation p.I318L 0.70 tolerated(0.86) benign(0.006) TCGA-3B-A9HP-01 11 123489481 123489481 C T GRAMD1B Missense_Mutation p.A661V 0.08 deleterious(0.04) benign(0.002) TCGA-3B-A9HP-01 11 5686894 5686894 C A TRIM5 Missense_Mutation p.R296L 0.25 tolerated(0.27) possibly_damaging(0.491) TCGA-3B-A9HP-01 11 6621898 6621898 C T RRP8 Splice_Site p.X385_splice 0.10 TCGA-3B-A9HP-01 11 93431161 93431161 G C KIAA1731 Missense_Mutation p.G1028A 0.21 tolerated(0.17) possibly_damaging(0.792) TCGA-3B-A9HP-01 12 105380151 105380151 C G C12orf45 Silent p.P7P 0.39 TCGA-3B-A9HP-01 12 108589816 108589816 C T WSCD2 Silent p.D69D 0.23 TCGA-3B-A9HP-01 12 3031436 3031436 G T TULP3 Missense_Mutation p.G88C 0.30 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HP-01 12 5021427 5021427 C G KCNA1 Missense_Mutation p.R295G 0.40 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HP-01 13 110857840 110857840 C T COL4A1 Splice_Site p.X301_splice 0.35 TCGA-3B-A9HP-01 13 28877265 28877265 T C FLT1 3'UTR 0.48 TCGA-3B-A9HP-01 13 48947563 48947563 C T RB1 Nonsense_Mutation p.Q384* 0.50 TCGA-3B-A9HP-01 14 69708329 69708329 C A EXD2 3'UTR 0.25 TCGA-3B-A9HP-01 14 70634566 70634566 C T SLC8A3 Missense_Mutation p.G192R 0.43 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HP-01 15 25924869 25924869 C T ATP10A Silent p.V1373V 0.26 TCGA-3B-A9HP-01 16 1735564 1735564 A G HN1L Missense_Mutation p.I57V 0.05 tolerated(0.85) benign(0.001) TCGA-3B-A9HP-01 16 19584522 19584522 G T C16orf62 Nonsense_Mutation p.E212* 0.47 TCGA-3B-A9HP-01 16 89357093 89357093 C T ANKRD11 Missense_Mutation p.A181T 0.05 probably_damaging(0.989) TCGA-3B-A9HP-01 16 89663123 89663123 T C CPNE7 3'UTR 0.45 TCGA-3B-A9HP-01 17 34499748 34499748 C G TBC1D3B Missense_Mutation p.A98P 0.32 deleterious(0) possibly_damaging(0.52) TCGA-3B-A9HP-01 17 39739670 39739670 C - KRT14 Frame_Shift_Del p.G364Vfs*13 0.16 TCGA-3B-A9HP-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.71 TCGA-3B-A9HP-01 18 48257847 48257847 G A MAPK4 3'UTR 0.12 TCGA-3B-A9HP-01 19 38951109 38951109 C T RYR1 Nonsense_Mutation p.R819* 0.41 TCGA-3B-A9HP-01 19 4694617 4694617 T C DPP9 Intron 0.14 TCGA-3B-A9HP-01 19 54265614 54265614 T C MIR519A2 RNA 0.38 TCGA-3B-A9HP-01 19 55144624 55144624 G A LILRB1 Silent p.T372T 0.42 TCGA-3B-A9HP-01 19 56241270 56241270 T C NLRP9 Missense_Mutation p.S641G 0.12 tolerated(0.42) benign(0.002) TCGA-3B-A9HP-01 1 152648741 152648741 C T LCE2C Missense_Mutation p.R84C 0.27 tolerated_low_confidence(0.19) unknown(0) TCGA-3B-A9HP-01 1 158449757 158449757 C T OR10R2 Silent p.T30T 0.07 TCGA-3B-A9HP-01 1 173545833 173545833 G T SLC9C2 Missense_Mutation p.T290N 0.20 tolerated(0.08) benign(0.015) TCGA-3B-A9HP-01 1 174200309 174200309 C A RABGAP1L Missense_Mutation p.P120T 0.33 deleterious(0.05) benign(0.058) TCGA-3B-A9HP-01 1 237947932 237947932 G A RYR2 Missense_Mutation p.R4307H 0.20 benign(0.005) TCGA-3B-A9HP-01 1 244870543 244870543 A G DESI2 3'UTR 0.20 TCGA-3B-A9HP-01 1 43316717 43316717 G A ZNF691 Missense_Mutation p.G61S 0.42 tolerated(0.14) benign(0.02) TCGA-3B-A9HP-01 20 37137749 37137749 T A RALGAPB Missense_Mutation p.F257Y 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-3B-A9HP-01 22 21989038 21989038 C A CCDC116 Missense_Mutation p.T229N 0.40 deleterious(0.02) possibly_damaging(0.845) TCGA-3B-A9HP-01 22 30423674 30423692 CCTTTGTTAAAGGAGGAAC - MTMR3 3'UTR 0.20 TCGA-3B-A9HP-01 2 100368752 100368752 C T AFF3 Nonsense_Mutation p.W336* 0.12 TCGA-3B-A9HP-01 2 166866229 166866229 C G SCN1A Missense_Mutation p.R1334S 0.28 deleterious(0) probably_damaging(0.975) TCGA-3B-A9HP-01 2 198571607 198571607 G T MARS2 Missense_Mutation p.W493L 0.18 deleterious(0) probably_damaging(1) TCGA-3B-A9HP-01 2 26539786 26539786 T C GPR113 Missense_Mutation p.T166A 0.45 deleterious(0) possibly_damaging(0.687) TCGA-3B-A9HP-01 2 27804695 27804695 T C C2orf16 Silent p.S1752S 0.04 TCGA-3B-A9HP-01 2 37426890 37426890 G A CEBPZ-AS1 Missense_Mutation p.G15R 0.37 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HP-01 3 119886364 119886364 C T GPR156 Missense_Mutation p.V654I 0.19 tolerated(0.32) benign(0.001) TCGA-3B-A9HP-01 3 122631807 122631807 C A SEMA5B Nonsense_Mutation p.E924* 0.07 TCGA-3B-A9HP-01 3 149051132 149051132 A - TM4SF18 Frame_Shift_Del p.L13Cfs*2 0.33 TCGA-3B-A9HP-01 3 149679402 149679402 T A RNF13 3'UTR 0.13 TCGA-3B-A9HP-01 3 49694741 49694741 C G BSN Missense_Mutation p.S2584R 0.07 unknown(0) TCGA-3B-A9HP-01 3 64633642 64633642 C T ADAMTS9 Missense_Mutation p.D562N 0.14 deleterious(0) probably_damaging(0.997) TCGA-3B-A9HP-01 4 10447772 10447772 C T ZNF518B Missense_Mutation p.A61T 0.18 tolerated(0.21) benign(0.039) TCGA-3B-A9HP-01 4 152600965 152600965 C T PET112 Silent p.Q470Q 0.10 TCGA-3B-A9HP-01 4 47809025 47809025 A C CORIN Missense_Mutation p.S35A 0.36 tolerated_low_confidence(0.26) benign(0.008) TCGA-3B-A9HP-01 5 139741642 139741642 A C SLC4A9 Missense_Mutation p.E225A 0.09 deleterious(0) probably_damaging(1) TCGA-3B-A9HP-01 5 43245743 43245743 G T NIM1K 5'UTR 0.67 TCGA-3B-A9HP-01 6 132891510 132891510 A T TAAR6 Missense_Mutation p.N17I 0.10 deleterious(0.05) possibly_damaging(0.563) TCGA-3B-A9HP-01 7 100677255 100677255 C - MUC17 Frame_Shift_Del p.S854Afs*14 0.28 TCGA-3B-A9HP-01 7 141385377 141385377 C G KIAA1147 Missense_Mutation p.S143T 0.45 deleterious(0.01) possibly_damaging(0.505) TCGA-3B-A9HP-01 9 117825327 117825327 T C TNC Missense_Mutation p.N1301S 0.47 tolerated(0.62) benign(0.009) TCGA-3B-A9HP-01 9 71867755 71867755 G A TJP2 Missense_Mutation p.D1147N 0.10 deleterious(0.04) possibly_damaging(0.856) TCGA-3B-A9HP-01 X 148076500 148076500 A G AFF2 3'UTR 0.39 TCGA-3B-A9HP-01 X 153881533 153881533 C T CTAG2 Missense_Mutation p.R86H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.465) TCGA-3B-A9HP-01 X 24760226 24760226 T C POLA1 Silent p.P812P 0.08 TCGA-3B-A9HP-01 X 48456271 48456271 A G WDR13 5'UTR 0.44 TCGA-3B-A9HQ-01 10 103898382 103898382 T A PPRC1 Missense_Mutation p.L117I 0.57 tolerated(0.05) probably_damaging(0.978) TCGA-3B-A9HQ-01 10 124336090 124336090 A G DMBT1 Silent p.G153G 0.66 TCGA-3B-A9HQ-01 10 134219604 134219604 C T PWWP2B Missense_Mutation p.P534S 0.56 deleterious(0) probably_damaging(0.969) TCGA-3B-A9HQ-01 11 4673791 4673791 C A OR51E1 Missense_Mutation p.A12D 0.36 tolerated(0.05) benign(0.394) TCGA-3B-A9HQ-01 11 56344488 56344488 G A OR5M10 Missense_Mutation p.A237V 0.42 deleterious(0.02) possibly_damaging(0.895) TCGA-3B-A9HQ-01 11 67207911 67207911 C T CORO1B Splice_Site p.X253_splice 0.05 TCGA-3B-A9HQ-01 11 7021039 7021039 G A ZNF214 3'UTR 0.23 TCGA-3B-A9HQ-01 12 53683327 53683327 C T ESPL1 Missense_Mutation p.P1688S 0.21 deleterious(0.02) probably_damaging(0.949) TCGA-3B-A9HQ-01 13 23910319 23910319 C T SACS Missense_Mutation p.D2566N 0.64 probably_damaging(0.996) TCGA-3B-A9HQ-01 14 101429389 101429389 C A AL132709.8 Intron 0.24 TCGA-3B-A9HQ-01 15 101554525 101554525 T A LRRK1 Missense_Mutation p.L475H 0.19 deleterious(0) probably_damaging(0.995) TCGA-3B-A9HQ-01 15 101554526 101554526 C T LRRK1 Silent p.L475L 0.19 TCGA-3B-A9HQ-01 15 68504112 68504112 C T CLN6 Silent p.V129V 0.12 TCGA-3B-A9HQ-01 15 83935620 83935620 G T BNC1 Missense_Mutation p.L135I 0.29 deleterious(0) probably_damaging(0.976) TCGA-3B-A9HQ-01 16 1375268 1375268 A G UBE2I 3'UTR 0.50 TCGA-3B-A9HQ-01 16 21896551 21896551 A T snoU13 3'Flank 0.35 TCGA-3B-A9HQ-01 16 47545604 47545606 CAA - PHKB In_Frame_Del p.T147del 0.41 TCGA-3B-A9HQ-01 16 72093029 72093029 C A HP Missense_Mutation p.N128K 0.26 deleterious(0.02) possibly_damaging(0.468) TCGA-3B-A9HQ-01 17 1657573 1657573 C T SERPINF2 Silent p.S407S 0.74 TCGA-3B-A9HQ-01 17 72527588 72527588 A C CD300LB Missense_Mutation p.C5G 0.16 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-3B-A9HQ-01 17 7364802 7364802 A G ZBTB4 3'UTR 0.22 TCGA-3B-A9HQ-01 17 7578369 7578369 A - TP53 Splice_Site p.X187_splice 0.38 TCGA-3B-A9HQ-01 18 31432200 31432200 G T NOL4 3'UTR 0.43 TCGA-3B-A9HQ-01 19 10795039 10795039 T C ILF3 Intron 0.12 TCGA-3B-A9HQ-01 19 2248202 2248202 A G SF3A2 Missense_Mutation p.H351R 0.38 tolerated_low_confidence(0.1) unknown(0) TCGA-3B-A9HQ-01 19 40978532 40978532 G A SPTBN4 Missense_Mutation p.A2T 0.57 tolerated_low_confidence(0.2) benign(0.004) TCGA-3B-A9HQ-01 19 4216723 4216723 G A ANKRD24 Silent p.E522E 0.38 TCGA-3B-A9HQ-01 1 149914098 149914098 G A OTUD7B 3'UTR 0.32 TCGA-3B-A9HQ-01 1 160395273 160395273 G A VANGL2 3'UTR 0.52 TCGA-3B-A9HQ-01 1 170705412 170705412 G T PRRX1 3'UTR 0.36 TCGA-3B-A9HQ-01 1 20027301 20027301 G A TMCO4 Missense_Mutation p.R448W 0.25 deleterious(0.02) probably_damaging(0.983) TCGA-3B-A9HQ-01 1 203013831 203013831 C T PPFIA4 Missense_Mutation p.A195V 0.07 tolerated(0.49) benign(0.001) TCGA-3B-A9HQ-01 1 203144809 203144809 G A MYBPH Silent p.P25P 0.35 TCGA-3B-A9HQ-01 1 207649750 207649750 C G CR2 Missense_Mutation p.A963G 0.30 deleterious(0.03) possibly_damaging(0.724) TCGA-3B-A9HQ-01 1 228596184 228596184 G A TRIM17 Silent p.P384P 0.06 TCGA-3B-A9HQ-01 1 47051606 47051606 G A MKNK1 Intron 0.31 TCGA-3B-A9HQ-01 1 54427720 54427720 C T LRRC42 Silent p.I246I 0.27 TCGA-3B-A9HQ-01 20 37101681 37101681 C A RALGAPB 5'UTR 0.30 TCGA-3B-A9HQ-01 20 896733 896733 T G ANGPT4 Missense_Mutation p.H42P 0.41 tolerated(0.62) benign(0.001) TCGA-3B-A9HQ-01 20 896734 896734 G T ANGPT4 Missense_Mutation p.H42N 0.41 tolerated(0.16) benign(0.093) TCGA-3B-A9HQ-01 22 32480510 32480510 C T SLC5A1 Missense_Mutation p.T250I 0.46 deleterious(0.02) benign(0.034) TCGA-3B-A9HQ-01 22 38122497 38122497 G A TRIOBP Missense_Mutation p.G1312R 0.54 deleterious_low_confidence(0.04) benign(0.192) TCGA-3B-A9HQ-01 22 43614417 43614417 G T SCUBE1 Missense_Mutation p.Q579K 0.40 tolerated(0.76) benign(0.04) TCGA-3B-A9HQ-01 22 46776812 46776812 T C CELSR1 Missense_Mutation p.T2377A 0.32 tolerated(0.67) benign(0.013) TCGA-3B-A9HQ-01 22 47059047 47059047 G A GRAMD4 Missense_Mutation p.E193K 0.16 deleterious(0.01) benign(0.048) TCGA-3B-A9HQ-01 2 125504848 125504848 G - CNTNAP5 Frame_Shift_Del p.R706Sfs*19 0.31 TCGA-3B-A9HQ-01 2 143743591 143743591 G C KYNU Splice_Site p.X301_splice 0.37 TCGA-3B-A9HQ-01 2 161350020 161350020 C T RBMS1 5'UTR 0.20 TCGA-3B-A9HQ-01 2 196849355 196849355 C A DNAH7 Splice_Site p.X611_splice 0.41 TCGA-3B-A9HQ-01 2 231036818 231036818 C G SP110 Missense_Mutation p.K593N 0.27 deleterious(0.01) possibly_damaging(0.607) TCGA-3B-A9HQ-01 2 42588512 42588512 G T COX7A2L 5'UTR 0.17 TCGA-3B-A9HQ-01 2 88071786 88071786 A - RGPD2 Frame_Shift_Del p.L1713* 0.15 TCGA-3B-A9HQ-01 2 98351033 98351033 G A ZAP70 Missense_Mutation p.V314M 0.20 deleterious(0.03) probably_damaging(0.959) TCGA-3B-A9HQ-01 3 170198390 170198390 T C SLC7A14 Missense_Mutation p.T561A 0.55 deleterious(0.01) possibly_damaging(0.844) TCGA-3B-A9HQ-01 3 369953 369953 T A CHL1 Missense_Mutation p.S101T 0.35 tolerated(0.89) benign(0.012) TCGA-3B-A9HQ-01 3 44905706 44905706 C T TMEM42 Silent p.C70C 0.08 TCGA-3B-A9HQ-01 4 11401038 11401038 C T HS3ST1 Missense_Mutation p.V198M 0.46 tolerated(0.26) benign(0.351) TCGA-3B-A9HQ-01 4 185637744 185637744 A G CENPU Missense_Mutation p.I142T 0.30 tolerated(0.98) benign(0) TCGA-3B-A9HQ-01 4 186598701 186598701 T A SORBS2 Intron 0.42 TCGA-3B-A9HQ-01 4 48165756 48165756 C T TEC Missense_Mutation p.V234I 0.32 tolerated(0.08) probably_damaging(0.994) TCGA-3B-A9HQ-01 4 66230840 66230840 C A EPHA5 Missense_Mutation p.V711L 0.45 deleterious(0) benign(0.017) TCGA-3B-A9HQ-01 4 68357896 68357896 A C CENPC Splice_Site p.X839_splice 0.35 TCGA-3B-A9HQ-01 5 110837715 110837715 C T STARD4 Missense_Mutation p.R76H 0.53 deleterious(0.01) benign(0.317) TCGA-3B-A9HQ-01 5 128368839 128368839 A G SLC27A6 Missense_Mutation p.H575R 0.20 tolerated(0.14) benign(0) TCGA-3B-A9HQ-01 5 140209082 140209082 C A PCDHA6 Missense_Mutation p.P469Q 0.56 deleterious_low_confidence(0.03) probably_damaging(0.952) TCGA-3B-A9HQ-01 5 154181828 154181828 G T LARP1 Missense_Mutation p.D583Y 0.48 deleterious(0) probably_damaging(1) TCGA-3B-A9HQ-01 5 31323298 31323298 G A CDH6 Silent p.S752S 0.51 TCGA-3B-A9HQ-01 6 116289822 116289823 AG T FRK Frame_Shift_Del p.S184Qfs*3 0.25 TCGA-3B-A9HQ-01 6 116574621 116574621 T - TSPYL4 Frame_Shift_Del p.K184Rfs*6 0.10 TCGA-3B-A9HQ-01 6 52053855 52053855 G A IL17A Missense_Mutation p.R78H 0.42 deleterious(0.02) probably_damaging(0.943) TCGA-3B-A9HQ-01 7 44695959 44695959 G C OGDH Intron 0.42 TCGA-3B-A9HQ-01 7 62752019 62752019 G A ZNF733P RNA 0.26 TCGA-3B-A9HQ-01 7 73117926 73117926 C A STX1A Intron 0.12 TCGA-3B-A9HQ-01 8 106815148 106815148 T G ZFPM2 Missense_Mutation p.S946R 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.764) TCGA-3B-A9HQ-01 8 123965961 123965961 C T ZHX2 Silent p.L737L 0.24 TCGA-3B-A9HQ-01 8 139707070 139707070 G - COL22A1 Frame_Shift_Del p.P882Rfs*120 0.14 TCGA-3B-A9HQ-01 8 73480416 73480416 C A KCNB2 Missense_Mutation p.N149K 0.46 deleterious(0.04) benign(0.296) TCGA-3B-A9HQ-01 9 125154702 125154702 C T PTGS1 Missense_Mutation p.T560M 0.06 deleterious(0) probably_damaging(0.99) TCGA-3B-A9HQ-01 9 135137998 135137998 C T SETX 3'UTR 0.20 TCGA-3B-A9HQ-01 9 138377398 138377398 A G PPP1R26 Missense_Mutation p.K348E 0.32 tolerated(0.12) benign(0.027) TCGA-3B-A9HQ-01 9 139650375 139650375 T G LCN8 Intron 0.14 TCGA-3B-A9HQ-01 9 18826431 18826431 C T ADAMTSL1 Silent p.L1362L 0.14 TCGA-3B-A9HQ-01 9 88937339 88937339 C - ZCCHC6 Frame_Shift_Del p.D977Tfs*11 0.29 TCGA-3B-A9HQ-01 9 97522615 97522615 A G C9orf3 Missense_Mutation p.R184G 0.39 deleterious(0) possibly_damaging(0.719) TCGA-3B-A9HQ-01 X 107224536 107224536 G T TEX13B Missense_Mutation p.A238E 0.35 deleterious(0.04) benign(0.053) TCGA-3B-A9HQ-01 X 12739532 12739532 A T FRMPD4 3'UTR 0.32 TCGA-3B-A9HQ-01 X 152721042 152721042 G A HAUS7 Silent p.P306P 0.31 TCGA-3B-A9HQ-01 X 153008509 153008509 C G ABCD1 Missense_Mutation p.R617G 0.36 deleterious(0) probably_damaging(0.994) TCGA-3B-A9HQ-01 X 56592402 56592402 C A UBQLN2 3'UTR 0.21 TCGA-3B-A9HR-01 10 11207208 11207208 C T CELF2 Intron 0.55 TCGA-3B-A9HR-01 10 8105992 8105992 C A GATA3 Missense_Mutation p.T272N 0.49 deleterious(0) possibly_damaging(0.877) TCGA-3B-A9HR-01 10 95658334 95658334 A G SLC35G1 Missense_Mutation p.K62R 0.33 tolerated(0.07) benign(0.015) TCGA-3B-A9HR-01 12 11082885 11082885 G A PRH2 Missense_Mutation p.V28I 0.24 tolerated_low_confidence(0.34) benign(0.208) TCGA-3B-A9HR-01 12 21331641 21331641 T C SLCO1B1 Missense_Mutation p.S205P 0.10 deleterious(0.02) probably_damaging(0.974) TCGA-3B-A9HR-01 12 21670873 21670873 A G GOLT1B 3'UTR 0.34 TCGA-3B-A9HR-01 12 55714741 55714741 C T OR6C1 Missense_Mutation p.R120C 0.33 deleterious_low_confidence(0.05) benign(0.082) TCGA-3B-A9HR-01 12 88496697 88496697 T C CEP290 Missense_Mutation p.N970S 0.32 benign(0.025) TCGA-3B-A9HR-01 14 34269971 34269971 G A NPAS3 Missense_Mutation p.A820T 0.20 tolerated_low_confidence(0.09) benign(0.072) TCGA-3B-A9HR-01 15 29996494 29996494 C G TJP1 Missense_Mutation p.S1695T 0.13 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HR-01 15 75594814 75594814 G A DNM1P34 Intron 0.32 TCGA-3B-A9HR-01 15 80429990 80429990 A G ZFAND6 3'UTR 0.23 TCGA-3B-A9HR-01 16 31157268 31157268 G A PRSS36 Missense_Mutation p.P188S 0.11 tolerated(0.13) probably_damaging(0.986) TCGA-3B-A9HR-01 16 4411430 4411430 G A CORO7 Missense_Mutation p.T540M 0.34 deleterious(0) probably_damaging(1) TCGA-3B-A9HR-01 17 37687921 37687921 G T CDK12 3'UTR 0.22 TCGA-3B-A9HR-01 19 1036080 1036080 G C CNN2 Intron 0.15 TCGA-3B-A9HR-01 19 1490349 1490349 G C PCSK4 5'UTR 0.19 TCGA-3B-A9HR-01 19 17838873 17838873 C T MAP1S Missense_Mutation p.R894C 0.16 deleterious(0) possibly_damaging(0.897) TCGA-3B-A9HR-01 19 38189646 38189646 T C ZNF607 Silent p.S462S 0.24 TCGA-3B-A9HR-01 19 44679216 44679216 G A ZNF226 Intron 0.19 TCGA-3B-A9HR-01 1 154178790 154178790 A - C1orf189 5'UTR 0.20 TCGA-3B-A9HR-01 1 155206233 155206233 A T GBA Missense_Mutation p.Y343N 0.30 deleterious(0) possibly_damaging(0.878) TCGA-3B-A9HR-01 1 182353617 182353617 A G GLUL Missense_Mutation p.F349L 0.07 deleterious(0) benign(0.182) TCGA-3B-A9HR-01 1 44457537 44457537 G A CCDC24 5'UTR 0.27 TCGA-3B-A9HR-01 1 75037267 75037267 G C C1orf173 Missense_Mutation p.S1376C 0.37 deleterious(0) possibly_damaging(0.891) TCGA-3B-A9HR-01 20 31099150 31099150 C G C20orf112 Missense_Mutation p.Q11H 0.23 deleterious_low_confidence(0) possibly_damaging(0.815) TCGA-3B-A9HR-01 20 51871719 51871719 G - TSHZ2 Frame_Shift_Del p.K574Nfs*2 0.19 TCGA-3B-A9HR-01 21 47924314 47924314 G C DIP2A Silent p.V232V 0.20 TCGA-3B-A9HR-01 21 48083368 48083368 G A PRMT2 Missense_Mutation p.G391S 0.33 deleterious(0.01) probably_damaging(1) TCGA-3B-A9HR-01 22 22786783 22786783 G T IGLV1-36 Missense_Mutation p.W111C 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.886) TCGA-3B-A9HR-01 22 32843215 32843215 A T BPIFC Missense_Mutation p.F120I 0.37 tolerated(0.84) benign(0.003) TCGA-3B-A9HR-01 22 50986680 50986680 C T KLHDC7B Missense_Mutation p.P29S 0.32 tolerated_low_confidence(0.08) benign(0.36) TCGA-3B-A9HR-01 2 80816439 80816439 C T CTNNA2 Missense_Mutation p.A673V 0.40 tolerated(0.08) possibly_damaging(0.629) TCGA-3B-A9HR-01 2 86090503 86090503 A G ST3GAL5 Missense_Mutation p.L63S 0.35 deleterious_low_confidence(0) benign(0.282) TCGA-3B-A9HR-01 3 189604233 189604233 A G TP63 Missense_Mutation p.N467S 0.14 tolerated(0.31) benign(0) TCGA-3B-A9HR-01 3 57203366 57203366 T C IL17RD 5'Flank 0.05 TCGA-3B-A9HR-01 4 11400916 11400916 C T HS3ST1 Silent p.S238S 0.07 TCGA-3B-A9HR-01 4 13570448 13570448 C T BOD1L1 3'UTR 0.12 TCGA-3B-A9HR-01 4 57180682 57180682 C T KIAA1211 Silent p.D338D 0.24 TCGA-3B-A9HR-01 4 81209881 81209881 A G FGF5 3'UTR 0.40 TCGA-3B-A9HR-01 5 177022925 177022925 A G TMED9 3'UTR 0.28 TCGA-3B-A9HR-01 5 76028937 76028937 G T F2R Missense_Mutation p.C296F 0.29 deleterious(0) possibly_damaging(0.866) TCGA-3B-A9HR-01 6 150039185 150039185 G A LATS1 5'UTR 0.13 TCGA-3B-A9HR-01 6 32095994 32095994 C T ATF6B 5'UTR 0.21 TCGA-3B-A9HR-01 7 100677114 100677114 C A MUC17 Missense_Mutation p.P806H 0.29 unknown(0) TCGA-3B-A9HR-01 9 100235889 100235889 A G TDRD7 Missense_Mutation p.E687G 0.18 deleterious(0) probably_damaging(0.936) TCGA-3B-A9HS-01 10 129906112 129906112 C T MKI67 Missense_Mutation p.R1331K 0.41 deleterious(0.04) benign(0.306) TCGA-3B-A9HS-01 10 45878107 45878107 G A ALOX5 Silent p.E109E 0.17 TCGA-3B-A9HS-01 11 132206330 132206330 G A NTM 3'Flank 0.42 TCGA-3B-A9HS-01 11 18387675 18387675 C T GTF2H1 3'UTR 0.08 TCGA-3B-A9HS-01 11 55036763 55036763 G A TRIM48 Silent p.A208A 0.26 TCGA-3B-A9HS-01 11 65562102 65562102 A T OVOL1 Nonsense_Mutation p.K138* 0.22 TCGA-3B-A9HS-01 12 100811922 100811922 G C SLC17A8 Missense_Mutation p.M471I 0.35 tolerated(0.45) benign(0.066) TCGA-3B-A9HS-01 12 124498773 124498773 C T ZNF664 3'UTR 0.41 TCGA-3B-A9HS-01 12 133502016 133502016 C A ZNF605 Silent p.G654G 0.27 TCGA-3B-A9HS-01 12 19489488 19489488 T A PLEKHA5 Missense_Mutation p.Y830N 0.45 tolerated(0.32) benign(0.394) TCGA-3B-A9HS-01 12 58130965 58130965 G A AGAP2 Silent p.S355S 0.10 TCGA-3B-A9HS-01 12 58131104 58131104 G A AGAP2 Missense_Mutation p.S309F 0.11 deleterious_low_confidence(0) benign(0.006) TCGA-3B-A9HS-01 12 58131125 58131125 G A AGAP2 Missense_Mutation p.A302V 0.10 deleterious_low_confidence(0.01) benign(0.007) TCGA-3B-A9HS-01 12 58131202 58131202 C G AGAP2 Missense_Mutation p.L276F 0.03 deleterious_low_confidence(0) benign(0.25) TCGA-3B-A9HS-01 12 69972830 69972830 A G FRS2 3'UTR 0.02 TCGA-3B-A9HS-01 12 81648810 81648810 G A ACSS3 3'UTR 0.07 TCGA-3B-A9HS-01 12 93171868 93171868 C T EEA1 Missense_Mutation p.E1248K 0.17 deleterious(0) probably_damaging(0.992) TCGA-3B-A9HS-01 13 113623624 113623624 G - MCF2L 5'UTR 0.24 TCGA-3B-A9HS-01 14 24701515 24701515 C T NEDD8 5'UTR 0.06 TCGA-3B-A9HS-01 14 77919693 77919693 C T VIPAS39 Missense_Mutation p.D49N 0.25 tolerated(0.1) benign(0.042) TCGA-3B-A9HS-01 14 77920424 77920424 C T VIPAS39 Missense_Mutation p.E8K 0.16 deleterious(0.01) possibly_damaging(0.777) TCGA-3B-A9HS-01 14 77978180 77978180 G A SPTLC2 3'UTR 0.18 TCGA-3B-A9HS-01 15 55677813 55677813 G A CCPG1 Nonsense_Mutation p.Q54* 0.24 TCGA-3B-A9HS-01 16 15188050 15188050 G C RRN3 Missense_Mutation p.A14G 0.35 tolerated_low_confidence(0.22) benign(0.042) TCGA-3B-A9HS-01 16 1817853 1817853 G C MAPK8IP3 Missense_Mutation p.V1152L 0.17 deleterious(0.04) benign(0.011) TCGA-3B-A9HS-01 16 31429830 31429830 G C ITGAD Missense_Mutation p.A909P 0.24 deleterious(0.01) possibly_damaging(0.566) TCGA-3B-A9HS-01 16 67691732 67691732 C T ACD Missense_Mutation p.G497S 0.17 deleterious(0.03) possibly_damaging(0.493) TCGA-3B-A9HS-01 16 70503093 70503093 G A FUK Silent p.E274E 0.36 TCGA-3B-A9HS-01 17 34308401 34308401 G T CCL16 Nonsense_Mutation p.S19* 0.40 TCGA-3B-A9HS-01 17 47677216 47677216 C T SPOP 3'UTR 0.20 TCGA-3B-A9HS-01 18 22805711 22805711 C T ZNF521 Missense_Mutation p.C724Y 0.19 deleterious(0) probably_damaging(1) TCGA-3B-A9HS-01 19 11347061 11347061 G A DOCK6 Missense_Mutation p.R785C 0.11 tolerated(0.09) benign(0.276) TCGA-3B-A9HS-01 19 12784098 12784098 G A WDR83 Missense_Mutation p.D256N 0.33 tolerated(0.07) benign(0.257) TCGA-3B-A9HS-01 19 1465585 1465585 G T APC2 Missense_Mutation p.R762L 0.19 probably_damaging(0.995) TCGA-3B-A9HS-01 19 15285085 15285085 G A NOTCH3 Silent p.R1510R 0.18 TCGA-3B-A9HS-01 19 18546720 18546720 G A ISYNA1 Silent p.I329I 0.11 TCGA-3B-A9HS-01 19 33422254 33422254 G T CEP89 Intron 0.20 TCGA-3B-A9HS-01 19 44590253 44590254 - G ZNF284 Frame_Shift_Ins p.C208Wfs*2 0.12 TCGA-3B-A9HS-01 19 54759174 54759174 G A LILRB5 Silent p.S309S 0.15 TCGA-3B-A9HS-01 19 55147089 55147089 A G LILRB1 Intron 0.15 TCGA-3B-A9HS-01 19 620024 620024 G A POLRMT Silent p.G940G 0.22 TCGA-3B-A9HS-01 19 9080536 9080536 C A MUC16 Silent p.V3165V 0.12 TCGA-3B-A9HS-01 1 100671856 100671856 A G DBT Missense_Mutation p.I404T 0.31 deleterious(0) possibly_damaging(0.856) TCGA-3B-A9HS-01 1 12837633 12837633 T A PRAMEF12 Missense_Mutation p.I448N 0.17 tolerated(0.15) benign(0.051) TCGA-3B-A9HS-01 1 156212062 156212062 G A BGLAP Missense_Mutation p.A14T 0.52 tolerated(0.24) unknown(0) TCGA-3B-A9HS-01 1 196876137 196876137 G A CFHR4 Missense_Mutation p.D195N 0.17 tolerated(0.63) benign(0.429) TCGA-3B-A9HS-01 1 228602621 228602621 C T TRIM17 Silent p.K51K 0.07 TCGA-3B-A9HS-01 1 243289697 243289697 T A CEP170 3'UTR 0.18 TCGA-3B-A9HS-01 1 43775167 43775167 G A TIE1 Missense_Mutation p.G433S 0.23 deleterious(0.02) probably_damaging(1) TCGA-3B-A9HS-01 1 52854898 52854898 T A ORC1 Missense_Mutation p.Q393L 0.09 deleterious(0.01) benign(0.097) TCGA-3B-A9HS-01 20 16385512 16385512 G A KIF16B Missense_Mutation p.T577I 0.53 deleterious(0) probably_damaging(0.959) TCGA-3B-A9HS-01 20 62492938 62492938 G A C20ORF135 Missense_Mutation p.L94F 0.22 possibly_damaging(0.773) TCGA-3B-A9HS-01 20 62493043 62493043 G A C20ORF135 Nonsense_Mutation p.Q59* 0.23 TCGA-3B-A9HS-01 22 17978464 17978464 G A CECR2 Missense_Mutation p.R102H 0.59 deleterious(0) probably_damaging(0.959) TCGA-3B-A9HS-01 22 46835181 46835181 C A CELSR1 Missense_Mutation p.R1437S 0.36 tolerated(0.15) benign(0.403) TCGA-3B-A9HS-01 2 37465000 37465000 A T NDUFAF7 Missense_Mutation p.D133V 0.10 deleterious(0) probably_damaging(1) TCGA-3B-A9HS-01 2 95719133 95719133 C T MAL Missense_Mutation p.S132F 0.40 deleterious(0) possibly_damaging(0.892) TCGA-3B-A9HS-01 3 161063153 161063153 C A SPTSSB 3'UTR 0.14 TCGA-3B-A9HS-01 3 184002758 184002758 C T ECE2 Missense_Mutation p.A456V 0.12 tolerated(0.29) possibly_damaging(0.906) TCGA-3B-A9HS-01 4 47625635 47625635 G A CORIN Silent p.V831V 0.11 TCGA-3B-A9HS-01 5 126154807 126154807 G A LMNB1 Missense_Mutation p.R378K 0.61 deleterious(0.01) probably_damaging(0.99) TCGA-3B-A9HS-01 5 39394370 39394370 G C DAB2 Missense_Mutation p.A18G 0.13 deleterious(0.01) possibly_damaging(0.529) TCGA-3B-A9HS-01 5 73045768 73045768 C T ARHGEF28 Missense_Mutation p.A47V 0.21 deleterious(0) possibly_damaging(0.867) TCGA-3B-A9HS-01 6 132271222 132271222 C T CTGF Missense_Mutation p.S207N 0.11 deleterious(0) probably_damaging(0.992) TCGA-3B-A9HS-01 6 139308750 139308750 C T REPS1 Missense_Mutation p.E24K 0.11 deleterious(0.01) benign(0.133) TCGA-3B-A9HS-01 6 150211953 150211953 C G RAET1E Missense_Mutation p.G29R 0.23 deleterious(0.04) possibly_damaging(0.522) TCGA-3B-A9HS-01 6 150240213 150240213 C A RAET1G Missense_Mutation p.M199I 0.11 tolerated(0.18) benign(0.024) TCGA-3B-A9HS-01 6 46832779 46832779 C A GPR116 Missense_Mutation p.G664W 0.22 deleterious(0) benign(0.004) TCGA-3B-A9HS-01 6 49819777 49819777 G A CRISP1 Silent p.I44I 0.07 TCGA-3B-A9HS-01 6 52142390 52142390 C T MCM3 Missense_Mutation p.E371K 0.26 deleterious(0) probably_damaging(0.992) TCGA-3B-A9HS-01 7 129395401 129395401 A G NRF1 3'UTR 0.22 TCGA-3B-A9HS-01 7 129908843 129908843 A T CPA2 Missense_Mutation p.H49L 0.21 tolerated(0.1) benign(0.106) TCGA-3B-A9HS-01 7 149422472 149422472 G T KRBA1 Missense_Mutation p.G398V 0.20 tolerated(0.13) possibly_damaging(0.623) TCGA-3B-A9HS-01 7 23827610 23827610 G A STK31 Silent p.K833K 0.08 TCGA-3B-A9HS-01 7 27871633 27871633 G A JAZF1 3'UTR 0.40 TCGA-3B-A9HS-01 8 105367287 105367287 G A DCSTAMP Silent p.V404V 0.20 TCGA-3B-A9HS-01 8 55537592 55537592 G A RP1 Missense_Mutation p.A384T 0.13 tolerated(0.11) benign(0.062) TCGA-3B-A9HS-01 9 77423051 77423051 T A TRPM6 Missense_Mutation p.I513F 0.04 deleterious(0) probably_damaging(0.964) TCGA-3B-A9HS-01 X 100182986 100182986 T G XKRX Missense_Mutation p.H103P 0.08 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HS-01 X 107415762 107415762 C A COL4A6 Missense_Mutation p.G1048C 0.34 probably_damaging(1) TCGA-3B-A9HS-01 X 119005763 119005763 G A RNF113A 5'UTR 0.50 TCGA-3B-A9HS-01 X 153701330 153701330 C T PLXNA3 3'UTR 0.12 TCGA-3B-A9HS-01 X 154197706 154197706 C T F8 Silent p.A303A 0.14 TCGA-3B-A9HS-01 X 18959720 18959720 G A PHKA2 Missense_Mutation p.S264F 0.13 deleterious(0) probably_damaging(0.992) TCGA-3B-A9HS-01 X 19008716 19008716 T A GPR64 3'UTR 0.17 TCGA-3B-A9HS-01 X 27765613 27765613 C A DCAF8L2 Missense_Mutation p.R201S 0.70 tolerated(1) benign(0.003) TCGA-3B-A9HS-01 X 35821013 35821013 G T MAGEB16 Missense_Mutation p.V234L 0.60 tolerated(0.77) benign(0.005) TCGA-3B-A9HS-01 X 76931772 76931772 G C ATRX Nonsense_Mutation p.S1253* 0.65 TCGA-3B-A9HS-01 X 7894060 7894060 T G PNPLA4 Missense_Mutation p.K34T 0.17 tolerated(0.13) benign(0.41) TCGA-3B-A9HT-01 10 101147724 101147724 G A CNNM1 Missense_Mutation p.A830T 0.15 tolerated(1) benign(0.001) TCGA-3B-A9HT-01 10 112045982 112045982 G A MXI1 3'UTR 0.33 TCGA-3B-A9HT-01 10 121340132 121340132 A G TIAL1 Intron 0.35 TCGA-3B-A9HT-01 10 135015334 135015334 G A KNDC1 Missense_Mutation p.V1107I 0.20 deleterious(0) possibly_damaging(0.67) TCGA-3B-A9HT-01 10 73512760 73512760 C A C10orf54 Splice_Site p.X226_splice 0.14 TCGA-3B-A9HT-01 10 75599351 75599351 G A CAMK2G Intron 0.45 TCGA-3B-A9HT-01 10 90365424 90365424 G T LIPJ Missense_Mutation p.W277L 0.44 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 10 90768708 90768708 T - FAS Frame_Shift_Del p.C135Vfs*52 0.12 TCGA-3B-A9HT-01 10 93390509 93390509 G A PPP1R3C Silent p.Y43Y 0.12 TCGA-3B-A9HT-01 10 97778823 97778824 - A CC2D2B Intron 0.16 TCGA-3B-A9HT-01 11 113102894 113102894 G A NCAM1 Missense_Mutation p.A464T 0.22 tolerated(0.12) benign(0.078) TCGA-3B-A9HT-01 11 119045226 119045226 G A NLRX1 Missense_Mutation p.R305H 0.43 deleterious(0.04) probably_damaging(1) TCGA-3B-A9HT-01 11 119244053 119244055 CTT - USP2 In_Frame_Del p.K46del 0.19 TCGA-3B-A9HT-01 11 130716045 130716045 C T RP11-890B15.2 RNA 0.33 TCGA-3B-A9HT-01 11 18638500 18638501 - T SPTY2D1 Frame_Shift_Ins p.D33Rfs*5 0.14 TCGA-3B-A9HT-01 11 27077051 27077051 A G BBOX1 Missense_Mutation p.E25G 0.24 tolerated(0.65) benign(0) TCGA-3B-A9HT-01 11 34156835 34156835 C T NAT10 Silent p.S675S 0.23 TCGA-3B-A9HT-01 11 35684863 35684863 C T TRIM44 Silent p.T68T 0.12 TCGA-3B-A9HT-01 11 3681429 3681429 C T ART1 Missense_Mutation p.A227V 0.46 tolerated(1) benign(0.075) TCGA-3B-A9HT-01 11 4701761 4701761 T C OR51E2 3'UTR 0.22 TCGA-3B-A9HT-01 11 48328423 48328423 G A OR4S1 Missense_Mutation p.V217I 0.43 tolerated(0.41) benign(0.004) TCGA-3B-A9HT-01 11 55587910 55587910 A G OR5D18 Missense_Mutation p.R269G 0.14 tolerated(0.41) benign(0.014) TCGA-3B-A9HT-01 11 60702157 60702157 G A TMEM132A Missense_Mutation p.R587H 0.42 tolerated(0.08) benign(0.005) TCGA-3B-A9HT-01 11 6129091 6129091 A G OR56B4 Missense_Mutation p.E28G 0.10 tolerated(0.07) benign(0.071) TCGA-3B-A9HT-01 11 62288339 62288339 G T AHNAK Missense_Mutation p.P4517Q 0.15 probably_damaging(1) TCGA-3B-A9HT-01 11 64702261 64702261 C T GPHA2 Missense_Mutation p.R125H 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-3B-A9HT-01 11 6478144 6478144 C A TRIM3 Missense_Mutation p.R271L 0.21 deleterious(0.01) benign(0.132) TCGA-3B-A9HT-01 11 6632451 6632451 G A TAF10 Missense_Mutation p.T179M 0.37 deleterious(0.05) probably_damaging(0.917) TCGA-3B-A9HT-01 11 6740380 6740380 C T GVINP1 RNA 0.12 TCGA-3B-A9HT-01 11 68115403 68115403 C T LRP5 Silent p.S60S 0.08 TCGA-3B-A9HT-01 11 69625282 69625282 G A FGF3 Missense_Mutation p.R171C 0.39 deleterious(0) probably_damaging(0.995) TCGA-3B-A9HT-01 11 70332268 70332268 G A SHANK2 Missense_Mutation p.A1378V 0.49 tolerated(0.08) possibly_damaging(0.499) TCGA-3B-A9HT-01 11 71277505 71277505 G T KRTAP5-10 3'UTR 0.14 TCGA-3B-A9HT-01 11 73021102 73021102 G A ARHGEF17 Silent p.T473T 0.27 TCGA-3B-A9HT-01 12 104015858 104015858 C T STAB2 Silent p.D152D 0.40 TCGA-3B-A9HT-01 12 117768335 117768335 G - NOS1 Frame_Shift_Del p.R181Gfs*29 0.24 TCGA-3B-A9HT-01 12 121432065 121432065 G T HNF1A Missense_Mutation p.R271L 0.26 deleterious(0.03) probably_damaging(0.936) TCGA-3B-A9HT-01 12 123468930 123468931 - G PITPNM2 3'UTR 0.30 TCGA-3B-A9HT-01 12 123475112 123475112 G A PITPNM2 Missense_Mutation p.T850M 0.22 deleterious(0.02) probably_damaging(1) TCGA-3B-A9HT-01 12 123489025 123489025 G A PITPNM2 Missense_Mutation p.R322C 0.15 tolerated(0.16) benign(0.002) TCGA-3B-A9HT-01 12 123706321 123706322 - A MPHOSPH9 Frame_Shift_Ins p.S5Ffs*5 0.28 TCGA-3B-A9HT-01 12 123889536 123889536 G A SETD8 Missense_Mutation p.A255T 0.34 deleterious(0) probably_damaging(0.986) TCGA-3B-A9HT-01 12 132250850 132250850 C T SFSWAP Silent p.V713V 0.08 TCGA-3B-A9HT-01 12 132636680 132636680 A G NOC4L Missense_Mutation p.N457D 0.16 tolerated(0.1) benign(0.211) TCGA-3B-A9HT-01 12 27850521 27850521 A - REP15 3'UTR 0.33 TCGA-3B-A9HT-01 12 46245627 46245627 A - ARID2 Frame_Shift_Del p.I1242* 0.16 TCGA-3B-A9HT-01 12 5153711 5153711 C T KCNA5 Missense_Mutation p.T133M 0.36 deleterious(0) probably_damaging(0.995) TCGA-3B-A9HT-01 12 51585487 51585487 G A POU6F1 Missense_Mutation p.A151V 0.21 deleterious(0) probably_damaging(0.932) TCGA-3B-A9HT-01 12 52757866 52757866 G A KRT85 Missense_Mutation p.R258C 0.35 tolerated(0.14) possibly_damaging(0.567) TCGA-3B-A9HT-01 12 52886583 52886583 G A KRT6A Silent p.C130C 0.12 TCGA-3B-A9HT-01 12 53183657 53183657 G A KRT3 3'UTR 0.30 TCGA-3B-A9HT-01 12 53509269 53509269 C T SOAT2 Missense_Mutation p.A180V 0.33 tolerated(1) benign(0.005) TCGA-3B-A9HT-01 12 53807232 53807232 T C SP1 3'Flank 0.47 TCGA-3B-A9HT-01 12 54967485 54967485 G A PDE1B Silent p.Q352Q 0.36 TCGA-3B-A9HT-01 12 63042336 63042336 C T PPM1H Missense_Mutation p.R493Q 0.43 deleterious(0.01) probably_damaging(0.994) TCGA-3B-A9HT-01 12 75874724 75874724 G A GLIPR1 Missense_Mutation p.A22T 0.09 tolerated(0.29) benign(0.003) TCGA-3B-A9HT-01 12 78515845 78515845 C T NAV3 Missense_Mutation p.S1292L 0.20 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 12 81102870 81102870 G T MYF6 3'UTR 0.27 TCGA-3B-A9HT-01 12 94703716 94703716 A G CCDC41 Missense_Mutation p.L660P 0.32 tolerated(0.1) benign(0.004) TCGA-3B-A9HT-01 13 109779832 109779832 C T MYO16 Missense_Mutation p.R1307W 0.38 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 13 112723431 112723431 G A SOX1 3'UTR 0.21 TCGA-3B-A9HT-01 13 113464952 113464952 G A ATP11A Missense_Mutation p.R118Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HT-01 13 113732740 113732740 G T MCF2L Missense_Mutation p.R575L 0.12 tolerated(0.1) benign(0.106) TCGA-3B-A9HT-01 13 21548926 21548926 G A LATS2 3'UTR 0.05 TCGA-3B-A9HT-01 13 21746492 21746492 A T SKA3 Missense_Mutation p.V106D 0.10 tolerated(0.19) benign(0.001) TCGA-3B-A9HT-01 13 27250749 27250749 C T WASF3 Missense_Mutation p.R202C 0.21 deleterious(0) probably_damaging(0.931) TCGA-3B-A9HT-01 13 41656910 41656910 G A WBP4 Missense_Mutation p.G331R 0.42 tolerated(0.32) benign(0.148) TCGA-3B-A9HT-01 13 41704810 41704811 - A KBTBD6 Frame_Shift_Ins p.C613Lfs*12 0.24 TCGA-3B-A9HT-01 13 45580382 45580383 - T GPALPP1 Frame_Shift_Ins p.G92Wfs*9 0.12 TCGA-3B-A9HT-01 13 46543874 46543874 C A ZC3H13 Missense_Mutation p.Q935H 0.18 unknown(0) TCGA-3B-A9HT-01 13 50207614 50207614 T C ARL11 3'UTR 0.08 TCGA-3B-A9HT-01 13 52511712 52511712 C A ATP7B Missense_Mutation p.G1268V 0.19 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 14 104205300 104205300 G A PPP1R13B Missense_Mutation p.R885W 0.33 deleterious(0) possibly_damaging(0.477) TCGA-3B-A9HT-01 14 105415468 105415468 A G AHNAK2 Missense_Mutation p.M2107T 0.18 benign(0) TCGA-3B-A9HT-01 14 21558391 21558391 G A ARHGEF40 3'UTR 0.14 TCGA-3B-A9HT-01 14 23242839 23242839 G A SLC7A7 Missense_Mutation p.R506W 0.33 deleterious(0.03) benign(0.339) TCGA-3B-A9HT-01 14 23994760 23994760 G - ZFHX2 Frame_Shift_Del p.P1464Lfs*49 0.30 TCGA-3B-A9HT-01 14 24655084 24655084 G A IPO4 Silent p.G384G 0.50 TCGA-3B-A9HT-01 14 24843375 24843375 A G NFATC4 Intron 0.38 TCGA-3B-A9HT-01 14 50576311 50576311 A - VCPKMT 3'UTR 0.33 TCGA-3B-A9HT-01 14 57046751 57046751 T A TMEM260 Missense_Mutation p.F40Y 0.27 tolerated(1) probably_damaging(0.931) TCGA-3B-A9HT-01 14 59930509 59930509 G A GPR135 Missense_Mutation p.T479M 0.51 deleterious(0.04) benign(0.075) TCGA-3B-A9HT-01 14 61512109 61512109 A G SLC38A6 Missense_Mutation p.T264A 0.05 deleterious(0.04) probably_damaging(0.999) TCGA-3B-A9HT-01 14 69256388 69256388 G - ZFP36L1 Frame_Shift_Del p.S294Afs*13 0.29 TCGA-3B-A9HT-01 14 71199670 71199670 G A MAP3K9 Missense_Mutation p.R820W 0.20 deleterious(0) probably_damaging(0.935) TCGA-3B-A9HT-01 14 92908447 92908447 C T SLC24A4 Silent p.S136S 0.30 TCGA-3B-A9HT-01 14 93107613 93107613 C T RIN3 Silent p.P157P 0.24 TCGA-3B-A9HT-01 14 99636335 99636335 T - BCL11B 3'UTR 0.10 TCGA-3B-A9HT-01 14 99864196 99864196 A G SETD3 3'UTR 0.14 TCGA-3B-A9HT-01 15 25601107 25601108 - A UBE3A Frame_Shift_Ins p.G689Wfs*2 0.28 TCGA-3B-A9HT-01 15 30664359 30664361 TCT - CHRFAM7A In_Frame_Del p.K171del 0.25 TCGA-3B-A9HT-01 15 31042691 31042691 A C ARHGAP11B RNA 0.41 TCGA-3B-A9HT-01 15 40569582 40569582 T - PAK6 3'UTR 0.15 TCGA-3B-A9HT-01 15 41060224 41060224 C T DNAJC17 Missense_Mutation p.V277I 0.17 tolerated(0.08) benign(0.133) TCGA-3B-A9HT-01 15 41809883 41809883 G A RPAP1 Missense_Mutation p.R1347W 0.33 deleterious(0) possibly_damaging(0.874) TCGA-3B-A9HT-01 15 49030471 49030471 T A CEP152 Missense_Mutation p.D1703V 0.29 deleterious(0) possibly_damaging(0.902) TCGA-3B-A9HT-01 15 63419132 63419133 AA - LACTB Frame_Shift_Del p.L169Hfs*17 0.28 TCGA-3B-A9HT-01 15 64462792 64462792 C A CSNK1G1 3'UTR 0.33 TCGA-3B-A9HT-01 15 69561452 69561452 C T GLCE Missense_Mutation p.R575C 0.09 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 15 74427736 74427736 G A ISLR2 3'UTR 0.43 TCGA-3B-A9HT-01 15 74932873 74932873 C T EDC3 Missense_Mutation p.R303Q 0.38 deleterious(0.02) possibly_damaging(0.516) TCGA-3B-A9HT-01 15 75142989 75142989 G T SCAMP2 Missense_Mutation p.N166K 0.28 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 15 76463371 76463371 C T C15orf27 Missense_Mutation p.P184L 0.45 tolerated(0.18) probably_damaging(0.999) TCGA-3B-A9HT-01 15 76958035 76958036 - T SCAPER Frame_Shift_Ins p.N868Kfs*2 0.22 TCGA-3B-A9HT-01 15 93588731 93588731 G A RGMA Missense_Mutation p.R292C 0.26 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HT-01 16 12662518 12662518 C T SNX29 3'UTR 0.16 TCGA-3B-A9HT-01 16 24836522 24836522 T - TNRC6A 3'UTR 0.36 TCGA-3B-A9HT-01 16 27732932 27732933 - T KIAA0556 Frame_Shift_Ins p.V556Cfs*25 0.29 TCGA-3B-A9HT-01 16 28508991 28508991 C G APOBR Missense_Mutation p.L877V 0.38 tolerated(0.07) benign(0.316) TCGA-3B-A9HT-01 16 2855011 2855011 C T PRSS41 RNA 0.26 TCGA-3B-A9HT-01 16 29690479 29690479 T C QPRT 5'UTR 0.12 TCGA-3B-A9HT-01 16 30018553 30018553 G A DOC2A Missense_Mutation p.R199C 0.13 deleterious(0) possibly_damaging(0.786) TCGA-3B-A9HT-01 16 4780042 4780042 G - ANKS3 Frame_Shift_Del p.L37Wfs*15 0.40 TCGA-3B-A9HT-01 16 50666204 50666204 C T NKD1 Silent p.D236D 0.17 TCGA-3B-A9HT-01 16 52473616 52473616 A T TOX3 Missense_Mutation p.S418T 0.50 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-3B-A9HT-01 16 56867314 56867314 G T NUP93 Missense_Mutation p.Q511H 0.33 tolerated(0.05) possibly_damaging(0.601) TCGA-3B-A9HT-01 16 57761251 57761251 C T CCDC135 Missense_Mutation p.A709V 0.46 tolerated(0.21) benign(0.019) TCGA-3B-A9HT-01 16 57790824 57790824 G A KATNB1 Missense_Mutation p.R645H 0.40 deleterious(0) probably_damaging(0.98) TCGA-3B-A9HT-01 16 597434 597434 C T CAPN15 Missense_Mutation p.A199V 0.36 tolerated(0.36) benign(0.002) TCGA-3B-A9HT-01 16 67182121 67182121 T A B3GNT9 3'UTR 0.20 TCGA-3B-A9HT-01 16 67765377 67765380 TGTC - RANBP10 Frame_Shift_Del p.R295Kfs*46 0.49 TCGA-3B-A9HT-01 16 67985101 67985101 G A SLC12A4 Silent p.V415V 0.62 TCGA-3B-A9HT-01 16 70866948 70866949 - T HYDIN Frame_Shift_Ins p.F4568Ifs*2 0.26 TCGA-3B-A9HT-01 16 71318037 71318037 G A CMTR2 Missense_Mutation p.P596L 0.34 tolerated(0.42) benign(0.001) TCGA-3B-A9HT-01 16 90128855 90128855 A T PRDM7 Silent p.G188G 0.10 TCGA-3B-A9HT-01 17 11837275 11837276 CT - DNAH9 Frame_Shift_Del p.C4127Qfs*41 0.11 TCGA-3B-A9HT-01 17 1370618 1370618 C G MYO1C Missense_Mutation p.G1028A 0.38 tolerated(0.71) benign(0.057) TCGA-3B-A9HT-01 17 25932715 25932715 C A KSR1 Missense_Mutation p.H509N 0.28 tolerated(1) benign(0.001) TCGA-3B-A9HT-01 17 27935228 27935228 G A ANKRD13B Missense_Mutation p.V131M 0.41 tolerated(0.09) possibly_damaging(0.814) TCGA-3B-A9HT-01 17 29552144 29552144 T - NF1 Frame_Shift_Del p.Y628Tfs*3 0.20 TCGA-3B-A9HT-01 17 35300394 35300395 - C LHX1 Frame_Shift_Ins p.E399Rfs*106 0.32 TCGA-3B-A9HT-01 17 39041314 39041314 G A KRT20 Missense_Mutation p.R42W 0.44 tolerated(0.21) benign(0.001) TCGA-3B-A9HT-01 17 39533947 39533947 G T KRT34 3'UTR 0.30 TCGA-3B-A9HT-01 17 43922898 43922898 A C SPPL2C Missense_Mutation p.E209A 0.25 deleterious(0.01) possibly_damaging(0.512) TCGA-3B-A9HT-01 17 44067384 44067384 C T MAPT Silent p.Y441Y 0.46 TCGA-3B-A9HT-01 17 4875806 4875806 C T CAMTA2 Silent p.S866S 0.36 TCGA-3B-A9HT-01 17 56498345 56498345 C A HSF5 3'UTR 0.12 TCGA-3B-A9HT-01 17 56599400 56599400 C T SEPT4 Missense_Mutation p.G257D 0.08 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 17 74385877 74385877 T - UBE2O 3'UTR 0.32 TCGA-3B-A9HT-01 17 74396565 74396565 C T UBE2O Missense_Mutation p.V321I 0.32 tolerated(0.16) benign(0.004) TCGA-3B-A9HT-01 17 7466910 7466910 G T SENP3 Missense_Mutation p.G173W 0.24 deleterious_low_confidence(0) possibly_damaging(0.515) TCGA-3B-A9HT-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.25 TCGA-3B-A9HT-01 17 7758474 7758474 G A TMEM88 Missense_Mutation p.A28T 0.16 tolerated(0.42) possibly_damaging(0.837) TCGA-3B-A9HT-01 17 79027510 79027510 G A BAIAP2 Missense_Mutation p.A33T 0.17 tolerated(1) possibly_damaging(0.534) TCGA-3B-A9HT-01 17 79410259 79410259 C T RP11-1055B8.7 Silent p.D628D 0.61 TCGA-3B-A9HT-01 17 7979987 7979987 C - ALOX12B Frame_Shift_Del p.L451Sfs*16 0.12 TCGA-3B-A9HT-01 17 97001 97001 C A RPH3AL Missense_Mutation p.A172S 0.04 tolerated(0.31) benign(0.01) TCGA-3B-A9HT-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.29 TCGA-3B-A9HT-01 18 72187269 72187269 C T CNDP2 Missense_Mutation p.A465V 0.21 deleterious(0.03) benign(0.035) TCGA-3B-A9HT-01 18 8786056 8786056 C T SOGA2 Silent p.H618H 0.21 TCGA-3B-A9HT-01 19 1011422 1011422 C T TMEM259 Silent p.A387A 0.29 TCGA-3B-A9HT-01 19 10468134 10468134 G A TYK2 Intron 0.12 TCGA-3B-A9HT-01 19 1049412 1049412 A C ABCA7 Missense_Mutation p.N843T 0.07 deleterious(0) possibly_damaging(0.611) TCGA-3B-A9HT-01 19 10610476 10610476 G A KEAP1 Silent p.D78D 0.38 TCGA-3B-A9HT-01 19 1080305 1080305 G A HMHA1 Silent p.A601A 0.26 TCGA-3B-A9HT-01 19 11473210 11473210 C T DKFZP761J1410 Missense_Mutation p.R204C 0.50 tolerated(0.05) possibly_damaging(0.886) TCGA-3B-A9HT-01 19 12223906 12223906 G A ZNF788 Missense_Mutation p.S515N 0.15 deleterious(0.02) benign(0.066) TCGA-3B-A9HT-01 19 1486915 1486915 G A PCSK4 Silent p.S335S 0.44 TCGA-3B-A9HT-01 19 16860994 16860994 C T NWD1 Missense_Mutation p.T514M 0.13 tolerated(0.09) benign(0.363) TCGA-3B-A9HT-01 19 17397421 17397421 T C ANKLE1 3'UTR 0.12 TCGA-3B-A9HT-01 19 18895803 18895803 C T COMP Missense_Mutation p.S606N 0.32 tolerated(0.29) probably_damaging(0.989) TCGA-3B-A9HT-01 19 20806995 20806995 T - ZNF626 3'UTR 0.10 TCGA-3B-A9HT-01 19 36276164 36276164 C T ARHGAP33 Missense_Mutation p.R599W 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.835) TCGA-3B-A9HT-01 19 36727937 36727937 C T ZNF146 Missense_Mutation p.L199F 0.08 deleterious(0.04) probably_damaging(1) TCGA-3B-A9HT-01 19 37211253 37211253 C T ZNF567 Missense_Mutation p.R512C 0.46 tolerated(0.26) probably_damaging(0.999) TCGA-3B-A9HT-01 19 4047335 4047335 C - ZBTB7A 3'UTR 0.27 TCGA-3B-A9HT-01 19 40883779 40883779 C T PLD3 Silent p.R424R 0.39 TCGA-3B-A9HT-01 19 42730292 42730292 C T ZNF526 Silent p.G579G 0.10 TCGA-3B-A9HT-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.18 TCGA-3B-A9HT-01 19 44791889 44791889 C T ZNF235 Missense_Mutation p.G567R 0.36 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 19 45404610 45404610 G A TOMM40 Intron 0.15 TCGA-3B-A9HT-01 19 4816506 4816506 C T TICAM1 Silent p.P628P 0.35 TCGA-3B-A9HT-01 19 48956136 48956136 G A GRWD1 Missense_Mutation p.G399R 0.25 tolerated(0.37) benign(0.001) TCGA-3B-A9HT-01 19 49132438 49132438 G A SPHK2 Missense_Mutation p.G458D 0.08 tolerated(0.08) possibly_damaging(0.776) TCGA-3B-A9HT-01 19 50666239 50666239 G A IZUMO2 Silent p.N71N 0.23 TCGA-3B-A9HT-01 19 5206828 5206828 G A PTPRS Missense_Mutation p.A1935V 0.35 deleterious(0) possibly_damaging(0.721) TCGA-3B-A9HT-01 19 54969372 54969372 T C LENG8 Missense_Mutation p.Y665H 0.13 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 19 55086865 55086865 C T LILRA2 Silent p.R266R 0.05 TCGA-3B-A9HT-01 19 803599 803600 - G PTBP1 Frame_Shift_Ins p.P28Tfs*16 0.33 TCGA-3B-A9HT-01 1 109554234 109554234 C T WDR47 Missense_Mutation p.R152H 0.35 deleterious(0) probably_damaging(0.974) TCGA-3B-A9HT-01 1 109777945 109777945 G A SARS Silent p.P287P 0.42 TCGA-3B-A9HT-01 1 113243902 113243902 T C RHOC 3'UTR 0.30 TCGA-3B-A9HT-01 1 114523089 114523089 T G OLFML3 Missense_Mutation p.S84A 0.39 tolerated(1) benign(0) TCGA-3B-A9HT-01 1 150190907 150190907 A T ANP32E 3'UTR 0.19 TCGA-3B-A9HT-01 1 150672620 150672620 G A HORMAD1 Missense_Mutation p.R358W 0.05 deleterious(0.01) possibly_damaging(0.794) TCGA-3B-A9HT-01 1 15478798 15478798 C T TMEM51 5'Flank 0.42 TCGA-3B-A9HT-01 1 155172080 155172080 C T THBS3 Missense_Mutation p.G357D 0.40 deleterious(0.01) probably_damaging(1) TCGA-3B-A9HT-01 1 156256092 156256092 C A TMEM79 Missense_Mutation p.L267I 0.20 tolerated(0.11) probably_damaging(0.96) TCGA-3B-A9HT-01 1 15788100 15788100 C T CELA2A Silent p.C58C 0.15 TCGA-3B-A9HT-01 1 159857724 159857724 C T CCDC19 Silent p.L165L 0.25 TCGA-3B-A9HT-01 1 166826839 166826839 G A TADA1 Missense_Mutation p.R325C 0.30 deleterious(0) benign(0.004) TCGA-3B-A9HT-01 1 16721922 16721922 G A SZRD1 3'UTR 0.29 TCGA-3B-A9HT-01 1 167745358 167745358 C T MPZL1 Silent p.S221S 0.33 TCGA-3B-A9HT-01 1 169679644 169679644 T G SELL Missense_Mutation p.K19N 0.09 deleterious_low_confidence(0) possibly_damaging(0.478) TCGA-3B-A9HT-01 1 17953982 17953982 G A ARHGEF10L Missense_Mutation p.R523H 0.50 deleterious(0.04) probably_damaging(0.961) TCGA-3B-A9HT-01 1 180010302 180010302 G A CEP350 Silent p.L1380L 0.40 TCGA-3B-A9HT-01 1 182993178 182993178 C T LAMC1 Silent p.Y109Y 0.10 TCGA-3B-A9HT-01 1 186056382 186056382 T C HMCN1 Missense_Mutation p.V3027A 0.36 benign(0.243) TCGA-3B-A9HT-01 1 205779322 205779322 C T SLC41A1 Missense_Mutation p.R83H 0.25 tolerated(0.06) benign(0) TCGA-3B-A9HT-01 1 209880054 209880054 G A HSD11B1 Missense_Mutation p.V74M 0.12 deleterious(0) probably_damaging(0.989) TCGA-3B-A9HT-01 1 21014288 21014288 C T KIF17 Missense_Mutation p.D511N 0.24 tolerated_low_confidence(0.36) benign(0.037) TCGA-3B-A9HT-01 1 21036298 21036298 G A KIF17 Silent p.G168G 0.44 TCGA-3B-A9HT-01 1 214178556 214178556 T - PROX1 Frame_Shift_Del p.Y594Ifs*10 0.29 TCGA-3B-A9HT-01 1 247921501 247921501 C G OR1C1 Missense_Mutation p.D70H 0.30 deleterious(0) probably_damaging(0.996) TCGA-3B-A9HT-01 1 248525879 248525879 C T OR2T4 Silent p.L333L 0.15 TCGA-3B-A9HT-01 1 3329296 3329296 G A PRDM16 Silent p.A845A 0.31 TCGA-3B-A9HT-01 1 39800065 39800065 G C MACF1 Intron 0.21 TCGA-3B-A9HT-01 1 45116990 45116993 CTCT - RNF220 3'UTR 0.26 TCGA-3B-A9HT-01 1 46472045 46472045 C T MAST2 Missense_Mutation p.R294W 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3B-A9HT-01 1 52704475 52704475 C T ZFYVE9 Silent p.F462F 0.13 TCGA-3B-A9HT-01 1 53364884 53364884 C T ECHDC2 Missense_Mutation p.V239M 0.14 tolerated(0.17) probably_damaging(0.993) TCGA-3B-A9HT-01 1 53516241 53516241 A - SCP2 Intron 0.33 TCGA-3B-A9HT-01 1 54497580 54497580 A - TMEM59 3'UTR 0.14 TCGA-3B-A9HT-01 1 55050452 55050452 T C ACOT11 Missense_Mutation p.V53A 0.15 deleterious(0.01) possibly_damaging(0.834) TCGA-3B-A9HT-01 1 6529145 6529145 T C PLEKHG5 Missense_Mutation p.T815A 0.19 tolerated(0.07) probably_damaging(0.953) TCGA-3B-A9HT-01 1 66834587 66834587 C A PDE4B Silent p.R594R 0.40 TCGA-3B-A9HT-01 1 70790568 70790568 G A ANKRD13C Missense_Mutation p.A182V 0.35 deleterious(0.04) probably_damaging(0.946) TCGA-3B-A9HT-01 1 71873148 71873148 T G NEGR1 Missense_Mutation p.K349T 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.747) TCGA-3B-A9HT-01 1 74670596 74670597 - A FPGT Frame_Shift_Ins p.I291Nfs*7 0.14 TCGA-3B-A9HT-01 1 93301874 93301874 C T RPL5 Missense_Mutation p.A151V 0.13 tolerated(0.18) benign(0.125) TCGA-3B-A9HT-01 20 19702963 19702963 G A SLC24A3 3'UTR 0.31 TCGA-3B-A9HT-01 20 20563753 20563753 G A RALGAPA2 Missense_Mutation p.A883V 0.45 tolerated(0.36) benign(0.001) TCGA-3B-A9HT-01 20 32378993 32378994 - C ZNF341 Frame_Shift_Ins p.Q741Pfs*22 0.29 TCGA-3B-A9HT-01 20 32686422 32686422 A G EIF2S2 Silent p.S105S 0.20 TCGA-3B-A9HT-01 20 33703483 33703483 T A EDEM2 Missense_Mutation p.E497V 0.48 tolerated(0.06) benign(0.147) TCGA-3B-A9HT-01 20 34099525 34099525 T G CEP250 3'UTR 0.17 TCGA-3B-A9HT-01 20 44698964 44698964 C T NCOA5 Missense_Mutation p.V84M 0.21 tolerated_low_confidence(0.26) unknown(0) TCGA-3B-A9HT-01 20 47241056 47241056 C T PREX1 3'UTR 0.39 TCGA-3B-A9HT-01 20 54573005 54573005 T - CBLN4 3'UTR 0.18 TCGA-3B-A9HT-01 20 58520788 58520788 T - FAM217B 3'UTR 0.36 TCGA-3B-A9HT-01 20 60891033 60891033 G A LAMA5 Missense_Mutation p.A2613V 0.39 possibly_damaging(0.475) TCGA-3B-A9HT-01 20 60902291 60902291 G A LAMA5 Missense_Mutation p.R1704W 0.24 probably_damaging(0.978) TCGA-3B-A9HT-01 20 62294213 62294213 G A RTEL1 Missense_Mutation p.R194H 0.39 tolerated(0.08) benign(0.249) TCGA-3B-A9HT-01 21 31661763 31661763 G - KRTAP25-1 Frame_Shift_Del p.Q16Kfs*21 0.25 TCGA-3B-A9HT-01 21 32932376 32932376 C T TIAM1 5'Flank 0.18 TCGA-3B-A9HT-01 21 33073423 33073423 T C SCAF4 Missense_Mutation p.N221S 0.30 benign(0.168) TCGA-3B-A9HT-01 21 38124933 38124933 T - HLCS 3'UTR 0.17 TCGA-3B-A9HT-01 21 40196057 40196057 C T ETS2 3'UTR 0.32 TCGA-3B-A9HT-01 21 46074550 46074550 G - KRTAP12-4 5'UTR 0.12 TCGA-3B-A9HT-01 22 19044526 19044526 C T DGCR2 Missense_Mutation p.E259K 0.07 tolerated(0.47) benign(0.31) TCGA-3B-A9HT-01 22 19365469 19365469 G A HIRA Silent p.F512F 0.10 TCGA-3B-A9HT-01 22 19481886 19481886 C T CDC45 Nonsense_Mutation p.R175* 0.17 TCGA-3B-A9HT-01 22 21805549 21805549 G A HIC2 3'UTR 0.12 TCGA-3B-A9HT-01 22 24376510 24376510 C A GSTT1 Missense_Mutation p.E212D 0.15 tolerated(0.42) benign(0) TCGA-3B-A9HT-01 22 26688805 26688805 C T SEZ6L Silent p.S176S 0.26 TCGA-3B-A9HT-01 22 31500967 31500967 C T SELM Missense_Mutation p.A143T 0.09 tolerated_low_confidence(0.07) benign(0.129) TCGA-3B-A9HT-01 22 32909719 32909719 C T SYN3 Missense_Mutation p.R568H 0.45 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HT-01 22 36689835 36689835 G A MYH9 Silent p.S1304S 0.22 TCGA-3B-A9HT-01 22 38271950 38271950 G A EIF3L Missense_Mutation p.A337T 0.09 tolerated(0.8) benign(0.036) TCGA-3B-A9HT-01 22 40731600 40731600 A C TNRC6B 3'UTR 0.06 TCGA-3B-A9HT-01 22 40801283 40801283 G T SGSM3 Missense_Mutation p.G205C 0.21 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 22 42382013 42382013 G A SEPT3 Silent p.T76T 0.06 TCGA-3B-A9HT-01 22 42523529 42523529 G A CYP2D6 Missense_Mutation p.R365C 0.08 deleterious(0.01) probably_damaging(0.943) TCGA-3B-A9HT-01 22 45938049 45938049 G A FBLN1 Missense_Mutation p.A361T 0.27 tolerated(0.35) benign(0.035) TCGA-3B-A9HT-01 22 46762287 46762287 C T CELSR1 Missense_Mutation p.V2766I 0.33 tolerated(0.37) benign(0.008) TCGA-3B-A9HT-01 22 47095308 47095308 C T CERK Missense_Mutation p.R282H 0.18 deleterious(0) probably_damaging(0.978) TCGA-3B-A9HT-01 22 51011375 51011375 G T CPT1B Silent p.S427S 0.28 TCGA-3B-A9HT-01 2 11767167 11767167 G A GREB1 Silent p.A1462A 0.25 TCGA-3B-A9HT-01 2 122000043 122000043 C T TFCP2L1 Silent p.P220P 0.12 TCGA-3B-A9HT-01 2 132238232 132238232 C T TUBA3D Silent p.D322D 0.46 TCGA-3B-A9HT-01 2 136396582 136396582 G A R3HDM1 Missense_Mutation p.R370Q 0.21 tolerated(0.09) probably_damaging(0.946) TCGA-3B-A9HT-01 2 138320890 138320890 C T THSD7B Missense_Mutation p.R1083C 0.32 deleterious(0.05) unknown(0) TCGA-3B-A9HT-01 2 141762962 141762962 G A LRP1B Silent p.G815G 0.14 TCGA-3B-A9HT-01 2 157184376 157184376 A C NR4A2 Missense_Mutation p.L382R 0.06 deleterious(0.01) probably_damaging(0.976) TCGA-3B-A9HT-01 2 157414067 157414067 C T GPD2 Missense_Mutation p.R380C 0.13 deleterious(0.05) probably_damaging(0.987) TCGA-3B-A9HT-01 2 166170230 166170230 C T SCN2A Missense_Mutation p.R379C 0.29 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 2 179481247 179481247 C T TTN Missense_Mutation p.V16091I 0.11 TCGA-3B-A9HT-01 2 18767589 18767589 T C NT5C1B Silent p.R123R 0.23 TCGA-3B-A9HT-01 2 202339398 202339398 G A STRADB Missense_Mutation p.R115Q 0.09 tolerated(0.41) benign(0.03) TCGA-3B-A9HT-01 2 206661874 206661874 C T NRP2 3'UTR 0.16 TCGA-3B-A9HT-01 2 215831612 215831612 A G ABCA12 Silent p.L1948L 0.16 TCGA-3B-A9HT-01 2 219528857 219528857 C A RNF25 Missense_Mutation p.K401N 0.09 deleterious(0.02) benign(0.025) TCGA-3B-A9HT-01 2 220027029 220027029 G A SLC23A3 Missense_Mutation p.T518M 0.09 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 2 228881380 228881380 C A SPHKAP Missense_Mutation p.S1397I 0.08 tolerated(0.23) benign(0.001) TCGA-3B-A9HT-01 2 234622355 234622356 - AG UGT1A5 Frame_Shift_Ins p.V243Rfs*21 0.09 TCGA-3B-A9HT-01 2 239974251 239974251 G A HDAC4 3'UTR 0.23 TCGA-3B-A9HT-01 2 241463600 241463600 A C ANKMY1 Missense_Mutation p.S423A 0.26 tolerated(0.11) benign(0.022) TCGA-3B-A9HT-01 2 24484029 24484029 T - ITSN2 Frame_Shift_Del p.K876Nfs*23 0.30 TCGA-3B-A9HT-01 2 25464487 25464487 G A DNMT3A Missense_Mutation p.R676W 0.41 deleterious(0.01) probably_damaging(1) TCGA-3B-A9HT-01 2 26852317 26852317 C T CIB4 Silent p.T49T 0.19 TCGA-3B-A9HT-01 2 32381112 32381112 T G SPAST 3'UTR 0.25 TCGA-3B-A9HT-01 2 37295977 37295977 G A HEATR5B Missense_Mutation p.R342W 0.20 deleterious(0) probably_damaging(0.968) TCGA-3B-A9HT-01 2 54855380 54855380 C T SPTBN1 Silent p.D597D 0.33 TCGA-3B-A9HT-01 2 60685692 60685692 C T BCL11A 3'UTR 0.30 TCGA-3B-A9HT-01 2 60686002 60686003 - A BCL11A 3'UTR 0.28 TCGA-3B-A9HT-01 2 61505330 61505330 T - USP34 Frame_Shift_Del p.K1801Nfs*14 0.15 TCGA-3B-A9HT-01 2 74492351 74492351 G A SLC4A5 Missense_Mutation p.R148C 0.21 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 2 74596522 74596522 G A DCTN1 Missense_Mutation p.R497C 0.47 deleterious(0) probably_damaging(0.985) TCGA-3B-A9HT-01 2 80529882 80529882 C G LRRTM1 Missense_Mutation p.D355H 0.30 deleterious(0) probably_damaging(0.995) TCGA-3B-A9HT-01 2 80540733 80540733 A - CTNNA2 Intron 0.19 TCGA-3B-A9HT-01 2 86437709 86437709 C T MRPL35 Missense_Mutation p.T162M 0.39 deleterious(0) possibly_damaging(0.876) TCGA-3B-A9HT-01 2 88885453 88885453 A - EIF2AK3 Frame_Shift_Del p.L519Yfs*7 0.28 TCGA-3B-A9HT-01 2 97217649 97217649 G A ARID5A Missense_Mutation p.V462M 0.54 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 2 98458362 98458362 C T TMEM131 Silent p.R213R 0.40 TCGA-3B-A9HT-01 3 119134704 119134704 C T ARHGAP31 Missense_Mutation p.R1310C 0.19 tolerated(0.08) benign(0.009) TCGA-3B-A9HT-01 3 120115714 120115714 G A FSTL1 3'UTR 0.41 TCGA-3B-A9HT-01 3 129249825 129249825 C T RHO Silent p.G156G 0.31 TCGA-3B-A9HT-01 3 133363182 133363182 C G TOPBP1 Missense_Mutation p.R510S 0.10 tolerated(0.76) benign(0) TCGA-3B-A9HT-01 3 135870189 135870189 C T MSL2 Missense_Mutation p.A512T 0.25 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HT-01 3 143185954 143185954 G A SLC9A9 Missense_Mutation p.T465M 0.38 deleterious(0.02) probably_damaging(0.94) TCGA-3B-A9HT-01 3 15718512 15718512 G T ANKRD28 Missense_Mutation p.L918I 0.23 tolerated(0.16) possibly_damaging(0.466) TCGA-3B-A9HT-01 3 169863250 169863250 C T PHC3 Silent p.S211S 0.20 TCGA-3B-A9HT-01 3 183706428 183706428 C T ABCC5 Silent p.K125K 0.21 TCGA-3B-A9HT-01 3 185866869 185866869 G A DGKG 3'UTR 0.10 TCGA-3B-A9HT-01 3 186760953 186760953 G A ST6GAL1 Silent p.E154E 0.29 TCGA-3B-A9HT-01 3 190366565 190366565 G A IL1RAP Intron 0.10 TCGA-3B-A9HT-01 3 192516411 192516411 C T MB21D2 Missense_Mutation p.A414T 0.25 tolerated(0.1) benign(0.135) TCGA-3B-A9HT-01 3 27216186 27216186 C T NEK10 Missense_Mutation p.E882K 0.31 tolerated(0.4) benign(0.132) TCGA-3B-A9HT-01 3 38938441 38938441 G A SCN11A Silent p.C766C 0.43 TCGA-3B-A9HT-01 3 39174499 39174499 G A TTC21A Intron 0.10 TCGA-3B-A9HT-01 3 42675201 42675201 G A NKTR Missense_Mutation p.M301I 0.06 deleterious_low_confidence(0.01) unknown(0) TCGA-3B-A9HT-01 3 44968199 44968199 C T ZDHHC3 Silent p.P322P 0.35 TCGA-3B-A9HT-01 3 46727052 46727052 C T ALS2CL Missense_Mutation p.R250H 0.45 tolerated(0.08) probably_damaging(0.999) TCGA-3B-A9HT-01 3 47387888 47387888 C T KLHL18 3'UTR 0.25 TCGA-3B-A9HT-01 3 47618363 47618363 C T CSPG5 Missense_Mutation p.G385S 0.44 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 3 48626118 48626118 G A COL7A1 Silent p.V848V 0.35 TCGA-3B-A9HT-01 3 49012290 49012290 G A ARIH2 Missense_Mutation p.C310Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 3 49928639 49928639 C T MST1R Missense_Mutation p.R1212Q 0.28 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 3 52678784 52678784 T - PBRM1 Frame_Shift_Del p.I279Yfs*4 0.19 TCGA-3B-A9HT-01 3 57619022 57619023 - A DENND6A Frame_Shift_Ins p.L441Ffs*47 0.12 TCGA-3B-A9HT-01 3 58553057 58553057 G A FAM107A Missense_Mutation p.R69C 0.09 tolerated(0.07) probably_damaging(0.996) TCGA-3B-A9HT-01 3 59738002 59738002 C A FHIT Nonsense_Mutation p.E132* 0.08 TCGA-3B-A9HT-01 3 72424271 72424271 G A RYBP 3'UTR 0.45 TCGA-3B-A9HT-01 3 89391179 89391179 G A EPHA3 Silent p.V415V 0.23 TCGA-3B-A9HT-01 4 104012389 104012389 G A BDH2 Missense_Mutation p.S101L 0.09 deleterious(0) possibly_damaging(0.806) TCGA-3B-A9HT-01 4 113435100 113435100 T - NEUROG2 3'UTR 0.18 TCGA-3B-A9HT-01 4 114254240 114254240 G A ANK2 Silent p.A1085A 0.43 TCGA-3B-A9HT-01 4 122593769 122593769 C T ANXA5 Missense_Mutation p.A182T 0.06 deleterious(0.01) probably_damaging(1) TCGA-3B-A9HT-01 4 124323203 124323203 G A SPRY1 Missense_Mutation p.A153T 0.12 tolerated(0.5) benign(0) TCGA-3B-A9HT-01 4 138452382 138452382 A G PCDH18 Silent p.S287S 0.10 TCGA-3B-A9HT-01 4 170016338 170016338 G A SH3RF1 3'UTR 0.08 TCGA-3B-A9HT-01 4 184432081 184432081 A - ING2 Frame_Shift_Del p.K275Rfs*32 0.20 TCGA-3B-A9HT-01 4 187509815 187509815 G A FAT1 Silent p.S4566S 0.16 TCGA-3B-A9HT-01 4 187540247 187540247 T A FAT1 Missense_Mutation p.E2498V 0.33 benign(0.05) TCGA-3B-A9HT-01 4 1946275 1946275 C A WHSC1 Intron 0.18 TCGA-3B-A9HT-01 4 42627651 42627652 - A ATP8A1 Frame_Shift_Ins p.L82Sfs*11 0.12 TCGA-3B-A9HT-01 4 68536256 68536256 C T UBA6 Missense_Mutation p.D201N 0.30 tolerated(0.15) benign(0.059) TCGA-3B-A9HT-01 4 69182115 69182115 G C YTHDC1 Missense_Mutation p.H626D 0.05 deleterious(0.02) benign(0.258) TCGA-3B-A9HT-01 4 69215624 69215624 C G YTHDC1 5'UTR 0.10 TCGA-3B-A9HT-01 4 71232706 71232706 C T SMR3A Missense_Mutation p.P134S 0.27 deleterious_low_confidence(0) unknown(0) TCGA-3B-A9HT-01 4 77817627 77817627 C G SOWAHB Missense_Mutation p.R459T 0.17 tolerated(0.26) benign(0.227) TCGA-3B-A9HT-01 5 111570402 111570402 C A EPB41L4A Missense_Mutation p.R339L 0.14 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 5 115827498 115827498 T A SEMA6A Missense_Mutation p.E158V 0.31 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 5 127520487 127520487 C T SLC12A2 Missense_Mutation p.R1148W 0.25 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 5 134724634 134724634 G A H2AFY Silent p.A50A 0.32 TCGA-3B-A9HT-01 5 135469548 135469548 C T SMAD5 Intron 0.27 TCGA-3B-A9HT-01 5 137419777 137419777 C T WNT8A 5'UTR 0.28 TCGA-3B-A9HT-01 5 137523280 137523281 - T KIF20A 3'UTR 0.26 TCGA-3B-A9HT-01 5 139216768 139216768 G A PSD2 Missense_Mutation p.R537H 0.32 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 5 140720140 140720140 G A PCDHGA2 Silent p.A534A 0.11 TCGA-3B-A9HT-01 5 140739910 140739910 G A PCDHGB2 Missense_Mutation p.A70T 0.14 tolerated(0.17) benign(0.229) TCGA-3B-A9HT-01 5 140767512 140767512 C A PCDHGB4 Missense_Mutation p.L21M 0.25 tolerated(0.07) probably_damaging(0.988) TCGA-3B-A9HT-01 5 140811463 140811463 C T PCDHGA12 Silent p.N379N 0.06 TCGA-3B-A9HT-01 5 140869033 140869033 T C PCDHGC5 Missense_Mutation p.S76P 0.34 tolerated(0.05) possibly_damaging(0.478) TCGA-3B-A9HT-01 5 142661045 142661045 G - NR3C1 3'UTR 0.20 TCGA-3B-A9HT-01 5 14692978 14692978 C T FAM105B Missense_Mutation p.L294F 0.37 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 5 149769450 149769450 G C TCOF1 Missense_Mutation p.G1016A 0.20 tolerated(1) benign(0) TCGA-3B-A9HT-01 5 153760019 153760019 C T GALNT10 Missense_Mutation p.R256W 0.13 deleterious(0.01) possibly_damaging(0.9) TCGA-3B-A9HT-01 5 16670877 16670877 G A MYO10 Missense_Mutation p.R1881W 0.19 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HT-01 5 167517646 167517646 G A TENM2 Missense_Mutation p.R528Q 0.22 deleterious(0.01) probably_damaging(0.946) TCGA-3B-A9HT-01 5 167849098 167849098 A - WWC1 Frame_Shift_Del p.S425Vfs*107 0.17 TCGA-3B-A9HT-01 5 167946112 167946112 C T RARS Missense_Mutation p.R634C 0.15 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 5 172561478 172561479 - T CREBRF 3'UTR 0.22 TCGA-3B-A9HT-01 5 176929983 176929983 G A DOK3 3'Flank 0.31 TCGA-3B-A9HT-01 5 180003320 180003320 A G CNOT6 3'UTR 0.11 TCGA-3B-A9HT-01 5 24488218 24488219 - T CDH10 Frame_Shift_Ins p.E641Rfs*18 0.15 TCGA-3B-A9HT-01 5 31529150 31529150 G A DROSHA Missense_Mutation p.T6I 0.14 tolerated_low_confidence(0.36) benign(0.003) TCGA-3B-A9HT-01 5 32088059 32088059 C T PDZD2 Missense_Mutation p.S1502L 0.19 deleterious(0) probably_damaging(0.998) TCGA-3B-A9HT-01 5 33989126 33989126 G T AMACR Intron 0.38 TCGA-3B-A9HT-01 5 34956320 34956320 C A DNAJC21 3'UTR 0.12 TCGA-3B-A9HT-01 5 36035965 36035965 C T UGT3A2 Silent p.T469T 0.21 TCGA-3B-A9HT-01 5 36227666 36227666 A C NADK2 Missense_Mutation p.L101R 0.11 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 5 43161952 43161952 A - ZNF131 Frame_Shift_Del p.I293Ffs*45 0.17 TCGA-3B-A9HT-01 5 639252 639252 C T CEP72 Nonsense_Mutation p.Q419* 0.30 TCGA-3B-A9HT-01 5 73188016 73188016 G A ARHGEF28 Missense_Mutation p.R1176H 0.15 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 5 73930729 73930729 G A ENC1 Missense_Mutation p.R528C 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-3B-A9HT-01 5 74657474 74657474 T C HMGCR 3'UTR 0.25 TCGA-3B-A9HT-01 5 77684680 77684680 T - SCAMP1 Frame_Shift_Del p.V26Gfs*26 0.21 TCGA-3B-A9HT-01 5 79351687 79351687 G A THBS4 Silent p.R124R 0.27 TCGA-3B-A9HT-01 5 79837570 79837571 - A FAM151B Frame_Shift_Ins p.Q253Tfs*5 0.08 TCGA-3B-A9HT-01 5 80715747 80715747 G A SSBP2 3'UTR 0.27 TCGA-3B-A9HT-01 6 106960257 106960257 G - AIM1 Frame_Shift_Del p.S16Rfs*44 0.22 TCGA-3B-A9HT-01 6 109764231 109764231 C T SMPD2 Nonsense_Mutation p.Q226* 0.25 TCGA-3B-A9HT-01 6 110768131 110768131 G A SLC22A16 Missense_Mutation p.A199V 0.40 tolerated(1) benign(0.024) TCGA-3B-A9HT-01 6 114178628 114178628 T - MARCKS 5'UTR 0.34 TCGA-3B-A9HT-01 6 116938393 116938393 G C RSPH4A Missense_Mutation p.A203P 0.08 tolerated(0.17) possibly_damaging(0.634) TCGA-3B-A9HT-01 6 126661509 126661509 G A CENPW Silent p.K30K 0.10 TCGA-3B-A9HT-01 6 128306968 128306968 G A PTPRK Missense_Mutation p.P1056L 0.19 deleterious(0) probably_damaging(0.995) TCGA-3B-A9HT-01 6 160010034 160010034 C - RP3-393E18.2 RNA 0.30 TCGA-3B-A9HT-01 6 168352571 168352571 T A MLLT4 Missense_Mutation p.S1506T 0.39 tolerated_low_confidence(0.17) benign(0.02) TCGA-3B-A9HT-01 6 22570532 22570532 C T HDGFL1 Missense_Mutation p.P243L 0.18 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-3B-A9HT-01 6 25726349 25726349 A G HIST1H2AA 3'UTR 0.10 TCGA-3B-A9HT-01 6 30153712 30153712 G A TRIM26 Missense_Mutation p.R521C 0.17 deleterious(0) unknown(0) TCGA-3B-A9HT-01 6 30552061 30552061 G A ABCF1 Missense_Mutation p.G399R 0.33 tolerated(0.13) benign(0.016) TCGA-3B-A9HT-01 6 30671546 30671546 G T MDC1 Missense_Mutation p.P1805H 0.12 deleterious(0) possibly_damaging(0.707) TCGA-3B-A9HT-01 6 34213425 34213425 C T HMGA1 3'UTR 0.41 TCGA-3B-A9HT-01 6 36359632 36359632 C G PXT1 Missense_Mutation p.R107T 0.35 deleterious_low_confidence(0.01) benign(0.065) TCGA-3B-A9HT-01 6 37298860 37298860 G A TBC1D22B Nonsense_Mutation p.W477* 0.09 TCGA-3B-A9HT-01 6 37600304 37600304 G A MDGA1 3'UTR 0.15 TCGA-3B-A9HT-01 6 42986276 42986276 C T KLHDC3 Missense_Mutation p.R239C 0.22 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 6 44271108 44271108 G A AARS2 Missense_Mutation p.A687V 0.16 tolerated(0.78) benign(0.017) TCGA-3B-A9HT-01 6 50791450 50791450 C A TFAP2B Silent p.R138R 0.25 TCGA-3B-A9HT-01 6 7230854 7230854 C T RREB1 Missense_Mutation p.A841V 0.40 tolerated(0.17) benign(0.396) TCGA-3B-A9HT-01 6 75838038 75838038 C T COL12A1 Missense_Mutation p.G2105D 0.22 possibly_damaging(0.473) TCGA-3B-A9HT-01 6 90641823 90641823 G A BACH2 3'UTR 0.07 TCGA-3B-A9HT-01 7 100276034 100276034 G A GNB2 Missense_Mutation p.G238D 0.33 deleterious(0) probably_damaging(0.99) TCGA-3B-A9HT-01 7 103138295 103138295 G A RELN Silent p.G2974G 0.11 TCGA-3B-A9HT-01 7 105254570 105254570 T C ATXN7L1 Silent p.G737G 0.22 TCGA-3B-A9HT-01 7 107743555 107743555 C T LAMB4 Missense_Mutation p.D372N 0.11 deleterious(0) possibly_damaging(0.71) TCGA-3B-A9HT-01 7 108154649 108154649 C A PNPLA8 Missense_Mutation p.R382M 0.32 deleterious(0) probably_damaging(0.984) TCGA-3B-A9HT-01 7 112723062 112723063 - A GPR85 3'UTR 0.25 TCGA-3B-A9HT-01 7 117003505 117003505 A T ASZ1 3'UTR 0.48 TCGA-3B-A9HT-01 7 12375778 12375778 C T VWDE Missense_Mutation p.R1548Q 0.33 tolerated(0.81) benign(0) TCGA-3B-A9HT-01 7 127221693 127221693 A G GCC1 3'UTR 0.09 TCGA-3B-A9HT-01 7 148489822 148489822 C T CUL1 Missense_Mutation p.S604L 0.22 deleterious(0) probably_damaging(0.967) TCGA-3B-A9HT-01 7 150935093 150935093 G A CHPF2 Missense_Mutation p.A549T 0.17 deleterious(0.01) benign(0.371) TCGA-3B-A9HT-01 7 19739716 19739716 C T TWISTNB Missense_Mutation p.R195Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HT-01 7 20371308 20371308 C A ITGB8 5'UTR 0.20 TCGA-3B-A9HT-01 7 2296591 2296591 G A SNX8 Missense_Mutation p.T401M 0.38 tolerated(0.07) benign(0.223) TCGA-3B-A9HT-01 7 29438038 29438038 G A CHN2 Missense_Mutation p.V76M 0.38 tolerated(0.08) benign(0.027) TCGA-3B-A9HT-01 7 34094854 34094854 G A BMPER Missense_Mutation p.C289Y 0.37 deleterious(0) probably_damaging(0.996) TCGA-3B-A9HT-01 7 36458929 36458929 T C ANLN Silent p.S570S 0.36 TCGA-3B-A9HT-01 7 44152925 44152925 T C AEBP1 Silent p.S928S 0.58 TCGA-3B-A9HT-01 7 73511493 73511493 G A LIMK1 Silent p.T125T 0.39 TCGA-3B-A9HT-01 7 82581542 82581542 G A PCLO Silent p.V2909V 0.41 TCGA-3B-A9HT-01 7 84651785 84651785 C T SEMA3D Missense_Mutation p.D446N 0.36 tolerated(0.35) probably_damaging(0.917) TCGA-3B-A9HT-01 7 92902025 92902025 C T CCDC132 Nonsense_Mutation p.R261* 0.25 TCGA-3B-A9HT-01 8 106813689 106813689 C T ZFPM2 Missense_Mutation p.T460I 0.26 deleterious(0.05) benign(0.063) TCGA-3B-A9HT-01 8 113236642 113236642 T - CSMD3 3'UTR 0.08 TCGA-3B-A9HT-01 8 12042940 12042940 G A FAM86B1 Silent p.Y245Y 0.12 TCGA-3B-A9HT-01 8 121301939 121301939 G A COL14A1 Silent p.T1390T 0.20 TCGA-3B-A9HT-01 8 133025592 133025592 C T EFR3A 3'UTR 0.16 TCGA-3B-A9HT-01 8 143996608 143996608 G A CYP11B2 Missense_Mutation p.S150L 0.15 tolerated(0.08) probably_damaging(0.909) TCGA-3B-A9HT-01 8 144997258 144997258 G A PLEC Missense_Mutation p.A2417V 0.21 probably_damaging(0.995) TCGA-3B-A9HT-01 8 21905620 21905620 G A FGF17 Missense_Mutation p.E171K 0.17 deleterious(0) benign(0.219) TCGA-3B-A9HT-01 8 22020665 22020665 G A SFTPC Missense_Mutation p.A92T 0.26 tolerated(0.05) probably_damaging(0.923) TCGA-3B-A9HT-01 8 27151695 27151695 C A TRIM35 Nonsense_Mutation p.E222* 0.12 TCGA-3B-A9HT-01 8 27296914 27296914 C T PTK2B Silent p.F611F 0.46 TCGA-3B-A9HT-01 8 27462569 27462569 G A CLU Missense_Mutation p.P234L 0.18 tolerated(0.68) benign(0.007) TCGA-3B-A9HT-01 8 27516934 27516934 G T SCARA3 Missense_Mutation p.R416L 0.12 deleterious(0.03) possibly_damaging(0.601) TCGA-3B-A9HT-01 8 28998064 28998065 - C KIF13B Frame_Shift_Ins p.V802Gfs*12 0.11 TCGA-3B-A9HT-01 8 30695394 30695394 A G TEX15 Silent p.T2419T 0.31 TCGA-3B-A9HT-01 8 42042646 42042646 G A PLAT Missense_Mutation p.A195V 0.23 deleterious(0.04) benign(0.052) TCGA-3B-A9HT-01 8 66594683 66594683 T G MTFR1 Missense_Mutation p.F54L 0.27 deleterious(0.01) probably_damaging(0.993) TCGA-3B-A9HT-01 8 70539472 70539472 C G SULF1 Missense_Mutation p.I626M 0.17 deleterious(0) possibly_damaging(0.908) TCGA-3B-A9HT-01 8 72109900 72109900 A G EYA1 3'UTR 0.05 TCGA-3B-A9HT-01 8 73951354 73951355 - A TERF1 Frame_Shift_Ins p.K351Efs*9 0.13 TCGA-3B-A9HT-01 8 73958296 73958296 G A TERF1 Missense_Mutation p.R415Q 0.15 deleterious(0) probably_damaging(0.985) TCGA-3B-A9HT-01 8 74704572 74704572 G A UBE2W 3'Flank 0.13 TCGA-3B-A9HT-01 8 74706001 74706001 A C UBE2W 3'UTR 0.13 TCGA-3B-A9HT-01 8 86392969 86392969 G A CA2 Missense_Mutation p.R245H 0.12 deleterious(0) probably_damaging(1) TCGA-3B-A9HT-01 8 87473537 87473537 G A WWP1 Missense_Mutation p.A862T 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-3B-A9HT-01 8 99142286 99142286 G A POP1 Silent p.T189T 0.07 TCGA-3B-A9HT-01 9 112932512 112932512 T - PALM2-AKAP2 3'UTR 0.39 TCGA-3B-A9HT-01 9 123177342 123177342 G A CDK5RAP2 Missense_Mutation p.R1425W 0.13 deleterious(0.01) probably_damaging(0.973) TCGA-3B-A9HT-01 9 123794394 123794394 A G C5 Missense_Mutation p.Y222H 0.12 deleterious(0) possibly_damaging(0.757) TCGA-3B-A9HT-01 9 130439024 130439024 G A STXBP1 Missense_Mutation p.V451I 0.29 tolerated(1) benign(0.009) TCGA-3B-A9HT-01 9 130552363 130552363 T A CDK9 3'UTR 0.26 TCGA-3B-A9HT-01 9 134360348 134360348 G A PRRC2B Missense_Mutation p.R1860H 0.32 deleterious(0) probably_damaging(0.995) TCGA-3B-A9HT-01 9 140173617 140173617 G A TOR4A Missense_Mutation p.R159H 0.18 deleterious(0.01) benign(0.168) TCGA-3B-A9HT-01 9 34098374 34098374 G A DCAF12 Missense_Mutation p.T248I 0.08 tolerated(0.18) benign(0.048) TCGA-3B-A9HT-01 9 34398222 34398222 C T FAM219A 3'UTR 0.41 TCGA-3B-A9HT-01 9 35705597 35705597 C T TLN1 Missense_Mutation p.R1895H 0.40 tolerated(0.16) benign(0.061) TCGA-3B-A9HT-01 9 6329431 6329431 T A TPD52L3 3'UTR 0.39 TCGA-3B-A9HT-01 9 74298403 74298403 A - TMEM2 3'UTR 0.15 TCGA-3B-A9HT-01 9 75773648 75773648 C T ANXA1 Missense_Mutation p.A35V 0.43 tolerated(0.09) benign(0.005) TCGA-3B-A9HT-01 9 90321168 90321168 G A DAPK1 Missense_Mutation p.R1061Q 0.23 tolerated(0.07) possibly_damaging(0.567) TCGA-3B-A9HT-01 9 93650108 93650108 C T SYK Silent p.S553S 0.44 TCGA-3B-A9HT-01 X 102564733 102564733 C T BEX2 Missense_Mutation p.V90I 0.52 tolerated(0.07) benign(0.103) TCGA-3B-A9HT-01 X 105179251 105179251 A - NRK Frame_Shift_Del p.K1199Nfs*3 0.09 TCGA-3B-A9HT-01 X 106793287 106793289 GAA - FRMPD3 In_Frame_Del p.K172del 0.38 TCGA-3B-A9HT-01 X 112023991 112023991 A - AMOT Intron 0.22 TCGA-3B-A9HT-01 X 128582345 128582346 CT - SMARCA1 Frame_Shift_Del p.R1035Sfs*9 0.14 TCGA-3B-A9HT-01 X 13789506 13789506 T A GPM6B 3'UTR 0.33 TCGA-3B-A9HT-01 X 149639409 149639409 A T MAMLD1 Missense_Mutation p.M497L 0.16 tolerated(0.1) benign(0.01) TCGA-3B-A9HT-01 X 155239605 155239605 C A IL9R Missense_Mutation p.P366H 0.16 deleterious(0.02) probably_damaging(0.957) TCGA-3B-A9HT-01 X 15845294 15845295 - A AP1S2 3'UTR 0.36 TCGA-3B-A9HT-01 X 17753002 17753002 T G NHS 3'UTR 0.45 TCGA-3B-A9HT-01 X 24232576 24232576 A - ZFX 3'UTR 0.08 TCGA-3B-A9HT-01 X 39932902 39932902 C T BCOR Missense_Mutation p.R566H 0.25 tolerated(0.09) benign(0.048) TCGA-3B-A9HT-01 X 39933594 39933594 G - BCOR Frame_Shift_Del p.S336Rfs*42 0.19 TCGA-3B-A9HT-01 X 40465111 40465111 A - ATP6AP2 3'UTR 0.18 TCGA-3B-A9HT-01 X 49068717 49068717 C T CACNA1F Missense_Mutation p.V1343I 0.55 deleterious(0) probably_damaging(0.923) TCGA-3B-A9HT-01 X 54275146 54275146 C A WNK3 Missense_Mutation p.S1212I 0.30 deleterious(0) possibly_damaging(0.544) TCGA-3B-A9HT-01 X 57618326 57618326 T G ZXDB 5'UTR 0.35 TCGA-3B-A9HT-01 X 70389119 70389119 G A NLGN3 Silent p.P573P 0.44 TCGA-3B-A9HT-01 X 70444048 70444048 G A GJB1 Missense_Mutation p.R164Q 0.61 deleterious(0.01) probably_damaging(0.972) TCGA-3B-A9HU-01 10 81274120 81274120 G A EIF5AL1 3'UTR 0.28 TCGA-3B-A9HU-01 11 117053257 117053257 A C SIDT2 Missense_Mutation p.E180A 0.33 tolerated(0.13) possibly_damaging(0.612) TCGA-3B-A9HU-01 11 1856171 1856171 G C SYT8 Intron 0.41 TCGA-3B-A9HU-01 11 45671339 45671339 C T CHST1 Missense_Mutation p.V379M 0.30 deleterious(0.02) possibly_damaging(0.631) TCGA-3B-A9HU-01 11 88027152 88027152 A T CTSC 3'UTR 0.48 TCGA-3B-A9HU-01 12 121766222 121766222 C T ANAPC5 Missense_Mutation p.A401T 0.23 tolerated(0.12) probably_damaging(0.982) TCGA-3B-A9HU-01 12 49308315 49308315 C A CCDC65 Missense_Mutation p.N143K 0.07 tolerated(0.63) benign(0.009) TCGA-3B-A9HU-01 13 37271010 37271010 G T SERTM1 3'UTR 0.41 TCGA-3B-A9HU-01 14 95669657 95669657 C T CLMN Missense_Mutation p.D677N 0.14 deleterious(0.04) benign(0.08) TCGA-3B-A9HU-01 15 20874842 20874842 C A NBEAP1 RNA 0.07 TCGA-3B-A9HU-01 16 1797211 1797211 G T MAPK8IP3 Missense_Mutation p.R309L 0.33 tolerated(0.19) benign(0.149) TCGA-3B-A9HU-01 17 42852679 42852679 G T ADAM11 Missense_Mutation p.K440N 0.23 deleterious(0.03) benign(0.151) TCGA-3B-A9HU-01 17 7577498 7577498 C T TP53 Splice_Site p.X261_splice 0.66 TCGA-3B-A9HU-01 17 8422225 8422225 C A MYH10 Missense_Mutation p.D773Y 0.32 probably_damaging(0.999) TCGA-3B-A9HU-01 18 29648343 29648343 C A RNF125 Missense_Mutation p.T232K 0.38 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-3B-A9HU-01 18 50683828 50683828 C T DCC Missense_Mutation p.A455V 0.20 tolerated(0.12) benign(0.012) TCGA-3B-A9HU-01 18 55145840 55145840 G - ONECUT2 3'UTR 0.24 TCGA-3B-A9HU-01 18 73122216 73122216 T C SMIM21 3'UTR 0.25 TCGA-3B-A9HU-01 19 10083634 10083634 C G COL5A3 Missense_Mutation p.K1245N 0.25 unknown(0) TCGA-3B-A9HU-01 19 10401797 10401797 C T ICAM5 Silent p.F44F 0.28 TCGA-3B-A9HU-01 19 10444141 10444141 G A RAVER1 Missense_Mutation p.P32S 0.25 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-3B-A9HU-01 19 51020772 51020772 C T LRRC4B 3'UTR 0.37 TCGA-3B-A9HU-01 1 156255739 156255739 G A TMEM79 Missense_Mutation p.R241H 0.26 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HU-01 1 206566936 206566936 C G SRGAP2 Missense_Mutation p.A160G 0.05 deleterious(0) possibly_damaging(0.476) TCGA-3B-A9HU-01 1 248020718 248020718 G C TRIM58 Missense_Mutation p.C57S 0.29 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HU-01 21 41385063 41385063 C G DSCAM Silent p.L1979L 0.45 TCGA-3B-A9HU-01 2 119739778 119739778 A G MARCO Silent p.G316G 0.32 TCGA-3B-A9HU-01 2 131673370 131673370 G T ARHGEF4 5'Flank 0.36 TCGA-3B-A9HU-01 2 171570607 171570607 G T LINC01124 Missense_Mutation p.A116E 0.29 unknown(0) TCGA-3B-A9HU-01 2 196709754 196709754 A G DNAH7 Missense_Mutation p.F2973L 0.32 deleterious(0) probably_damaging(0.994) TCGA-3B-A9HU-01 2 208631288 208631288 A T FZD5 3'UTR 0.05 TCGA-3B-A9HU-01 2 25966933 25966933 G C ASXL2 Missense_Mutation p.T758S 0.10 tolerated_low_confidence(0.25) benign(0) TCGA-3B-A9HU-01 2 68401973 68401973 G A PNO1 3'UTR 0.44 TCGA-3B-A9HU-01 4 100738081 100738081 C A DAPP1 Missense_Mutation p.A4E 0.11 deleterious_low_confidence(0.01) benign(0.137) TCGA-3B-A9HU-01 4 76568478 76568479 - TT G3BP2 3'UTR 0.09 TCGA-3B-A9HU-01 4 8588802 8588802 C T GPR78 Silent p.F268F 0.21 TCGA-3B-A9HU-01 5 154395666 154395666 T C KIF4B Silent p.N749N 0.30 TCGA-3B-A9HU-01 5 179221116 179221116 C A LTC4S Missense_Mutation p.T12N 0.13 deleterious(0) probably_damaging(0.982) TCGA-3B-A9HU-01 6 2668106 2668106 C T MYLK4 3'UTR 0.30 TCGA-3B-A9HU-01 6 38994431 38994431 G T DNAH8 Silent p.T4391T 0.21 TCGA-3B-A9HU-01 6 84368742 84368742 T C SNAP91 Silent p.Q174Q 0.21 TCGA-3B-A9HU-01 7 4823388 4823388 C T AP5Z1 Missense_Mutation p.P194S 0.15 tolerated(0.33) benign(0.004) TCGA-3B-A9HU-01 7 64613446 64613446 G A INTS4L1 RNA 0.27 TCGA-3B-A9HU-01 7 83591051 83591051 G A SEMA3A Missense_Mutation p.A651V 0.19 deleterious(0) probably_damaging(0.997) TCGA-3B-A9HU-01 8 11280926 11280926 G A FAM167A 3'UTR 0.10 TCGA-3B-A9HU-01 8 66963819 66963819 C T DNAJC5B Silent p.L13L 0.36 TCGA-3B-A9HU-01 9 107457047 107457047 T A OR13D1 Silent p.I115I 0.37 TCGA-3B-A9HU-01 9 125627715 125627715 C A RC3H2 Missense_Mutation p.R516I 0.29 deleterious_low_confidence(0.03) probably_damaging(0.962) TCGA-3B-A9HU-01 9 139379833 139379833 T C C9orf163 3'UTR 0.07 TCGA-3B-A9HU-01 X 153590144 153590144 G A FLNA Silent p.G946G 0.30 TCGA-3B-A9HU-01 X 19014264 19014264 A - GPR64 Frame_Shift_Del p.F874Sfs*42 0.17 TCGA-3B-A9HU-01 X 49034448 49034448 A G PRICKLE3 Silent p.A283A 0.18 TCGA-3B-A9HV-01 10 105642449 105642449 G A OBFC1 Missense_Mutation p.A367V 0.18 tolerated(0.17) possibly_damaging(0.521) TCGA-3B-A9HV-01 10 134660691 134660691 C T TTC40 Silent p.K2029K 0.10 TCGA-3B-A9HV-01 10 134663926 134663926 G A TTC40 Missense_Mutation p.T1925M 0.47 tolerated(0.3) benign(0.009) TCGA-3B-A9HV-01 11 58893917 58893917 C T FAM111B 3'UTR 0.40 TCGA-3B-A9HV-01 12 131357002 131357002 G T RAN Intron 0.22 TCGA-3B-A9HV-01 12 65471568 65471568 C T WIF1 Missense_Mutation p.V119I 0.43 tolerated(0.78) benign(0.007) TCGA-3B-A9HV-01 13 113862432 113862432 C G PCID2 Intron 0.14 TCGA-3B-A9HV-01 13 114204145 114204145 G T TMCO3 3'UTR 0.67 TCGA-3B-A9HV-01 14 23567055 23567055 C G C14orf119 Missense_Mutation p.A63G 0.52 tolerated(0.57) benign(0.295) TCGA-3B-A9HV-01 14 89878531 89878531 G A FOXN3 Missense_Mutation p.S97F 0.78 deleterious(0) possibly_damaging(0.905) TCGA-3B-A9HV-01 15 34651374 34651374 G T LPCAT4 Missense_Mutation p.A510D 0.47 deleterious(0.01) benign(0.063) TCGA-3B-A9HV-01 15 60741046 60741046 C T NARG2 Splice_Site p.X707_splice 0.25 TCGA-3B-A9HV-01 15 72533687 72533687 G C PARP6 3'UTR 0.25 TCGA-3B-A9HV-01 15 83349336 83349336 T C AP3B2 Missense_Mutation p.S315G 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-3B-A9HV-01 16 30410334 30410339 AGCACC - ZNF48 In_Frame_Del p.H589_Q590del 0.35 TCGA-3B-A9HV-01 16 56921897 56921897 C G SLC12A3 Missense_Mutation p.Q747E 0.05 tolerated(0.08) benign(0.096) TCGA-3B-A9HV-01 16 89187269 89187269 G A ACSF3 Missense_Mutation p.R396K 0.38 tolerated(1) benign(0.002) TCGA-3B-A9HV-01 17 48940115 48940116 TG - TOB1 3'UTR 0.27 TCGA-3B-A9HV-01 17 6913399 6913399 T A AC027763.2 Intron 0.46 TCGA-3B-A9HV-01 17 7578177 7578177 C A TP53 Missense_Mutation p.E224D 0.39 tolerated(0.06) benign(0.085) TCGA-3B-A9HV-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.47 deleterious(0) probably_damaging(1) TCGA-3B-A9HV-01 17 7727575 7727575 G A DNAH2 Missense_Mutation p.G3872D 0.33 probably_damaging(1) TCGA-3B-A9HV-01 19 36606551 36606551 G A TBCB Missense_Mutation p.R30H 0.41 deleterious(0.02) benign(0.055) TCGA-3B-A9HV-01 19 59025454 59025454 C T ZBTB45 Silent p.L501L 0.22 TCGA-3B-A9HV-01 19 7998995 7998995 C T TIMM44 Silent p.A174A 0.50 TCGA-3B-A9HV-01 19 9084380 9084397 CCATGGTGCTGAAAGTTC - MUC16 In_Frame_Del p.R2473_V2479delinsI 0.50 TCGA-3B-A9HV-01 1 115215870 115215870 G A AMPD1 Silent p.D736D 0.08 TCGA-3B-A9HV-01 1 120437108 120437108 A T ADAM30 Missense_Mutation p.C618S 0.13 deleterious(0) probably_damaging(0.963) TCGA-3B-A9HV-01 1 156843634 156843634 G A NTRK1 Missense_Mutation p.V354I 0.43 tolerated(0.72) benign(0.046) TCGA-3B-A9HV-01 1 157738333 157738333 T A FCRL2 Missense_Mutation p.T252S 0.45 deleterious(0.05) possibly_damaging(0.692) TCGA-3B-A9HV-01 1 35658646 35658646 G A SFPQ Missense_Mutation p.S2F 0.09 deleterious_low_confidence(0) unknown(0) TCGA-3B-A9HV-01 20 47274767 47274767 C A PREX1 Splice_Site p.X628_splice 0.13 TCGA-3B-A9HV-01 20 47895195 47895195 G T ZNFX1 5'Flank 0.38 TCGA-3B-A9HV-01 21 32638611 32638611 A C TIAM1 Missense_Mutation p.C226W 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.765) TCGA-3B-A9HV-01 2 131674030 131674030 G C ARHGEF4 5'Flank 0.64 TCGA-3B-A9HV-01 2 178417356 178417356 C T TTC30B Missense_Mutation p.A46T 0.47 deleterious(0.02) probably_damaging(0.964) TCGA-3B-A9HV-01 2 189599668 189599668 G A DIRC1 5'UTR 0.55 TCGA-3B-A9HV-01 2 44099138 44099138 C A ABCG8 Missense_Mutation p.R330S 0.17 deleterious(0.04) benign(0.246) TCGA-3B-A9HV-01 2 69172683 69172683 G A GKN2 Intron 0.09 TCGA-3B-A9HV-01 3 113377174 113377174 T C KIAA2018 Missense_Mutation p.N1119D 0.35 benign(0.11) TCGA-3B-A9HV-01 3 17208291 17208291 G T TBC1D5 Missense_Mutation p.Q710K 0.15 tolerated_low_confidence(0.97) benign(0.002) TCGA-3B-A9HV-01 3 185823486 185823486 C A ETV5 Nonsense_Mutation p.E21* 0.46 TCGA-3B-A9HV-01 3 51673957 51673957 C T RAD54L2 Silent p.L725L 0.06 TCGA-3B-A9HV-01 4 123336640 123336643 TCAT - ADAD1 Frame_Shift_Del p.H453Lfs*3 0.43 TCGA-3B-A9HV-01 4 42403180 42403180 A C SHISA3 Silent p.T143T 0.12 TCGA-3B-A9HV-01 5 150480829 150480829 C G ANXA6 3'UTR 0.56 TCGA-3B-A9HV-01 5 152873493 152873493 T G GRIA1 Missense_Mutation p.L40V 0.16 tolerated(0.08) benign(0.313) TCGA-3B-A9HV-01 5 180056420 180056420 C A FLT4 Missense_Mutation p.R275L 0.08 deleterious(0.04) possibly_damaging(0.842) TCGA-3B-A9HV-01 5 35957294 35957294 G C UGT3A1 Silent p.L357L 0.35 TCGA-3B-A9HV-01 5 94927274 94927274 C T ARSK Silent p.A347A 0.38 TCGA-3B-A9HV-01 6 107955405 107955405 C T SOBP Missense_Mutation p.R453W 0.20 deleterious(0) probably_damaging(1) TCGA-3B-A9HV-01 6 26056568 26056568 C - HIST1H1C Frame_Shift_Del p.G30Vfs*33 0.37 TCGA-3B-A9HV-01 6 33145927 33145927 A T COL11A2 Silent p.P532P 0.25 TCGA-3B-A9HV-01 6 47650127 47650127 C A GPR111 Missense_Mutation p.A611D 0.16 deleterious(0) probably_damaging(0.976) TCGA-3B-A9HV-01 7 150035448 150035448 G A RARRES2 3'UTR 0.06 TCGA-3B-A9HV-01 7 157000591 157000591 A C UBE3C Missense_Mutation p.I591L 0.38 tolerated(0.36) benign(0.001) TCGA-3B-A9HV-01 7 30200495 30200495 C G MTURN 3'UTR 0.20 TCGA-3B-A9HV-01 7 3681632 3681632 C T SDK1 Missense_Mutation p.S203F 0.21 deleterious(0.02) benign(0.053) TCGA-3B-A9HV-01 7 3681652 3681652 C A SDK1 Missense_Mutation p.L210I 0.16 tolerated(0.58) benign(0.268) TCGA-3B-A9HV-01 7 54610225 54610225 T G VSTM2A 5'UTR 0.50 TCGA-3B-A9HV-01 7 98534813 98534813 C T TRRAP Silent p.S1382S 0.09 TCGA-3B-A9HV-01 8 133045354 133045354 G A OC90 Missense_Mutation p.A264V 0.48 tolerated(0.06) benign(0.072) TCGA-3B-A9HV-01 8 24339813 24339813 T C ADAM7 Silent p.V288V 0.92 TCGA-3B-A9HV-01 8 36698469 36698469 C G KCNU1 Missense_Mutation p.H551D 0.05 tolerated(0.36) benign(0.018) TCGA-3B-A9HV-01 8 55539286 55539286 C A RP1 Missense_Mutation p.S948R 0.46 deleterious(0) benign(0.084) TCGA-3B-A9HV-01 9 139959003 139959003 C A SAPCD2 3'UTR 0.17 TCGA-3B-A9HV-01 9 91931306 91931306 T G CKS2 Missense_Mutation p.F69C 0.12 deleterious(0) possibly_damaging(0.89) TCGA-3B-A9HV-01 9 95237014 95237014 G A ASPN Missense_Mutation p.L56F 0.42 tolerated(0.24) possibly_damaging(0.721) TCGA-3B-A9HV-01 X 24227114 24227114 A C ZFX Missense_Mutation p.K397N 0.48 deleterious(0.03) benign(0.015) TCGA-3B-A9HV-01 X 26213207 26213207 C A MAGEB6 3'UTR 0.10 TCGA-3B-A9HV-01 X 47920220 47920220 G T ZNF630 Silent p.T40T 0.36 TCGA-3B-A9HV-01 X 48687960 48687960 G T ERAS Missense_Mutation p.A143S 0.19 tolerated(0.68) benign(0.232) TCGA-3B-A9HV-01 X 99929528 99929528 T A SYTL4 3'UTR 0.06 TCGA-3B-A9HX-01 10 105920843 105920843 A G WDR96 Silent p.Y1164Y 0.09 TCGA-3B-A9HX-01 10 29821886 29821886 A - SVIL Frame_Shift_Del p.S472Lfs*11 0.14 TCGA-3B-A9HX-01 10 50019585 50019585 C T WDFY4 Silent p.D1682D 0.17 TCGA-3B-A9HX-01 10 52751154 52751154 G T PRKG1 Nonsense_Mutation p.E6* 0.23 TCGA-3B-A9HX-01 11 1010752 1010752 C T AP2A2 3'UTR 0.19 TCGA-3B-A9HX-01 11 111167512 111167512 C T COLCA1 5'UTR 0.05 TCGA-3B-A9HX-01 11 58979797 58979797 C T MPEG1 Missense_Mutation p.R181H 0.16 tolerated(1) benign(0.002) TCGA-3B-A9HX-01 11 76062812 76062812 T C PRKRIR Missense_Mutation p.N461S 0.56 tolerated(0.24) benign(0.002) TCGA-3B-A9HX-01 12 120124959 120124959 G A CIT 3'UTR 0.45 TCGA-3B-A9HX-01 12 58141213 58141213 G A TSPAN31 3'UTR 0.22 TCGA-3B-A9HX-01 13 103383736 103383736 C T CCDC168 Silent p.R1808R 0.46 TCGA-3B-A9HX-01 15 24921704 24921704 G A NPAP1 Silent p.A230A 0.12 TCGA-3B-A9HX-01 15 52358347 52358347 T C MAPK6 3'UTR 0.44 TCGA-3B-A9HX-01 15 55483213 55483213 A G RSL24D1 Silent p.N76N 0.26 TCGA-3B-A9HX-01 15 81281996 81281996 G A MESDC2 Missense_Mutation p.P46L 0.32 deleterious(0.02) benign(0.001) TCGA-3B-A9HX-01 15 89865211 89865211 A C POLG Missense_Mutation p.L821R 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-3B-A9HX-01 16 1444179 1444179 G C UNKL Missense_Mutation p.T294S 0.18 tolerated(0.44) benign(0.023) TCGA-3B-A9HX-01 16 56921864 56921864 A G SLC12A3 Missense_Mutation p.N736D 0.11 deleterious(0.01) benign(0.299) TCGA-3B-A9HX-01 16 70820149 70820149 C T VAC14 Missense_Mutation p.G75D 0.16 deleterious(0) probably_damaging(1) TCGA-3B-A9HX-01 17 4688713 4688713 C T VMO1 Missense_Mutation p.G185S 0.22 deleterious(0.03) probably_damaging(0.956) TCGA-3B-A9HX-01 17 7578464 7578464 G C TP53 Missense_Mutation p.R156G 0.50 tolerated(0.33) probably_damaging(0.977) TCGA-3B-A9HX-01 17 7918813 7918813 G T GUCY2D Silent p.L979L 0.16 TCGA-3B-A9HX-01 19 41008344 41008344 G A SPTBN4 Missense_Mutation p.S378N 0.17 deleterious(0.01) benign(0.365) TCGA-3B-A9HX-01 19 41128398 41128398 C T LTBP4 Missense_Mutation p.P1170S 0.09 tolerated(0.33) benign(0.436) TCGA-3B-A9HX-01 19 58595586 58595586 G C ZSCAN18 3'Flank 0.13 TCGA-3B-A9HX-01 19 8974071 8974071 G A MUC16 Silent p.G14200G 0.13 TCGA-3B-A9HX-01 1 10438662 10438662 G T KIF1B 3'Flank 0.12 TCGA-3B-A9HX-01 1 152056626 152056626 A C TCHHL1 3'UTR 0.26 TCGA-3B-A9HX-01 1 216246286 216246286 C T USH2A Silent p.S1934S 0.14 TCGA-3B-A9HX-01 1 228560353 228560353 G C OBSCN Missense_Mutation p.A8249P 0.07 possibly_damaging(0.857) TCGA-3B-A9HX-01 1 33282793 33282793 A C YARS Missense_Mutation p.L18R 0.20 deleterious(0) probably_damaging(1) TCGA-3B-A9HX-01 22 24036039 24036039 C T RGL4 Missense_Mutation p.R264C 0.07 tolerated(0.15) benign(0.052) TCGA-3B-A9HX-01 2 131520382 131520382 C T AMER3 Missense_Mutation p.S246L 0.43 deleterious(0) probably_damaging(1) TCGA-3B-A9HX-01 2 202589136 202589136 G A ALS2 Missense_Mutation p.R1132C 0.38 tolerated(0.08) probably_damaging(0.991) TCGA-3B-A9HX-01 2 220427206 220427206 C A OBSL1 Silent p.L957L 0.49 TCGA-3B-A9HX-01 2 25536822 25536824 TCC AT DNMT3A Frame_Shift_Del p.D11Sfs*61 0.21 TCGA-3B-A9HX-01 2 74043560 74043560 G A C2orf78 Missense_Mutation p.R737Q 0.54 deleterious(0.02) benign(0.424) TCGA-3B-A9HX-01 3 16974586 16974586 C T PLCL2 Intron 0.14 TCGA-3B-A9HX-01 4 185599415 185599415 C G PRIMPOL Missense_Mutation p.L292V 0.36 probably_damaging(0.999) TCGA-3B-A9HX-01 4 20597435 20597435 T C SLIT2 Missense_Mutation p.C1100R 0.32 deleterious(0) probably_damaging(0.999) TCGA-3B-A9HX-01 4 36149219 36149219 C A ARAP2 Missense_Mutation p.M1050I 0.35 tolerated(0.16) benign(0.001) TCGA-3B-A9HX-01 4 38802484 38802484 G C TLR1 5'UTR 0.32 TCGA-3B-A9HX-01 4 8621215 8621215 G C CPZ Missense_Mutation p.L610F 0.15 tolerated(0.7) benign(0.001) TCGA-3B-A9HX-01 5 139222200 139222200 G A PSD2 3'UTR 0.29 TCGA-3B-A9HX-01 5 140481682 140481682 C G PCDHB3 Missense_Mutation p.N483K 0.22 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-3B-A9HX-01 5 145890622 145890622 A T TCERG1 3'UTR 0.09 TCGA-3B-A9HX-01 6 153019226 153019226 C G MYCT1 Missense_Mutation p.N63K 0.44 tolerated(0.18) benign(0.015) TCGA-3B-A9HX-01 6 96035054 96035054 T C MANEA Intron 0.52 TCGA-3B-A9HX-01 7 100491025 100491025 G A ACHE Missense_Mutation p.R277C 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-3B-A9HX-01 7 100841961 100841961 C T MOGAT3 Missense_Mutation p.V147M 0.19 tolerated(0.29) benign(0.041) TCGA-3B-A9HX-01 7 135047671 135047671 T A CNOT4 Missense_Mutation p.D703V 0.11 deleterious_low_confidence(0) possibly_damaging(0.714) TCGA-3B-A9HX-01 7 142983670 142983670 G C TMEM139 Silent p.G133G 0.15 TCGA-3B-A9HX-01 7 88965546 88965546 G C ZNF804B Missense_Mutation p.G1084R 0.32 tolerated(0.3) possibly_damaging(0.839) TCGA-3B-A9HX-01 7 88965547 88965547 G T ZNF804B Missense_Mutation p.G1084V 0.32 tolerated(0.38) benign(0.086) TCGA-3B-A9HX-01 8 70476322 70476322 C T SULF1 Nonsense_Mutation p.R38* 0.38 TCGA-3B-A9HX-01 9 107288553 107288553 C G OR13C4 Missense_Mutation p.R313T 0.24 deleterious(0) benign(0.018) TCGA-3B-A9HX-01 9 107288554 107288554 T G OR13C4 Silent p.R313R 0.24 TCGA-3B-A9HX-01 9 135946410 135946410 C G CEL Missense_Mutation p.H510Q 0.22 tolerated(0.72) benign(0.002) TCGA-3B-A9HX-01 9 40772812 40772812 T C ZNF658 Silent p.T821T 0.41 TCGA-3B-A9HX-01 X 11136723 11136723 G T HCCS Missense_Mutation p.W168C 0.18 deleterious(0) probably_damaging(0.997) TCGA-3B-A9HX-01 X 153688708 153688708 A G PLXNA3 Missense_Mutation p.E62G 0.13 tolerated(0.09) probably_damaging(0.94) TCGA-3B-A9HX-01 X 16875809 16875809 C A RBBP7 Missense_Mutation p.D213Y 0.59 deleterious(0) probably_damaging(1) TCGA-3B-A9HX-01 X 17166491 17166491 A C REPS2 3'UTR 0.67 TCGA-3B-A9HX-01 X 6069226 6069226 C T NLGN4X Silent p.P94P 0.54 TCGA-3B-A9HX-01 X 76890128 76890128 C T ATRX Missense_Mutation p.G1589E 0.45 probably_damaging(1) TCGA-3B-A9HY-01 10 21805720 21805720 A G SKIDA1 Silent p.H344H 0.25 TCGA-3B-A9HY-01 10 90988006 90988006 G A LIPA Missense_Mutation p.R127W 0.78 deleterious(0.01) benign(0.377) TCGA-3B-A9HY-01 10 96014797 96014797 G A PLCE1 Missense_Mutation p.S1182N 0.50 tolerated(0.15) benign(0.008) TCGA-3B-A9HY-01 11 124413017 124413017 A G OR8B12 Silent p.C178C 0.38 TCGA-3B-A9HY-01 11 33628349 33628349 C T KIAA1549L Missense_Mutation p.S1384L 0.16 deleterious(0.02) possibly_damaging(0.547) TCGA-3B-A9HY-01 12 1943471 1943471 G A LRTM2 Missense_Mutation p.E233K 0.42 tolerated(0.06) benign(0.445) TCGA-3B-A9HY-01 12 20905320 20905320 A C SLCO1C1 Missense_Mutation p.E700D 0.45 tolerated_low_confidence(0.07) benign(0.011) TCGA-3B-A9HY-01 12 32134974 32134974 A C KIAA1551 Missense_Mutation p.Q362P 0.33 tolerated(0.17) possibly_damaging(0.746) TCGA-3B-A9HY-01 12 50189868 50189868 G T NCKAP5L Missense_Mutation p.P592Q 0.16 tolerated(0.07) benign(0.048) TCGA-3B-A9HY-01 13 21548919 21548919 A C LATS2 3'UTR 0.24 TCGA-3B-A9HY-01 13 48955394 48955394 C T RB1 Nonsense_Mutation p.Q504* 0.89 TCGA-3B-A9HY-01 14 104508408 104508408 T C TDRD9 Silent p.V1286V 0.47 TCGA-3B-A9HY-01 14 65266545 65266545 G T SPTB Silent p.R328R 0.17 TCGA-3B-A9HY-01 14 74995277 74995277 C T LTBP2 Silent p.R759R 0.53 TCGA-3B-A9HY-01 15 63363682 63363710 AGAGTCAACAGGAAGGTTAATGTTGGAAA TGTGTTT TPM1 3'UTR 0.44 TCGA-3B-A9HY-01 15 63363710 63363710 A T TPM1 3'UTR 0.48 TCGA-3B-A9HY-01 15 89398253 89398253 C T ACAN Missense_Mutation p.P813S 0.39 tolerated(0.36) benign(0) TCGA-3B-A9HY-01 16 1827076 1827076 G A SPSB3 3'UTR 0.57 TCGA-3B-A9HY-01 16 1827077 1827077 G A SPSB3 3'UTR 0.57 TCGA-3B-A9HY-01 16 31332830 31332830 C A ITGAM Silent p.P629P 0.06 TCGA-3B-A9HY-01 16 53534175 53534175 G A AKTIP 5'UTR 0.15 TCGA-3B-A9HY-01 17 10303854 10303854 C T MYH8 Silent p.R1196R 0.67 TCGA-3B-A9HY-01 17 10303855 10303855 C T MYH8 Missense_Mutation p.R1196Q 0.62 deleterious(0.01) probably_damaging(0.975) TCGA-3B-A9HY-01 17 61939769 61939769 A G TCAM1P RNA 0.15 TCGA-3B-A9HY-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.75 deleterious(0) probably_damaging(1) TCGA-3B-A9HY-01 17 7577540 7577540 G A TP53 Silent p.N247N 0.65 TCGA-3B-A9HY-01 19 16539564 16539564 G C EPS15L1 Missense_Mutation p.D169E 0.39 tolerated(0.79) benign(0.306) TCGA-3B-A9HY-01 19 43383689 43383689 C T PSG1 Nonsense_Mutation p.W15* 0.49 TCGA-3B-A9HY-01 19 58325967 58325967 G A ZNF552 Intron 0.22 TCGA-3B-A9HY-01 19 991344 991344 C T WDR18 Silent p.A308A 0.88 TCGA-3B-A9HY-01 19 991345 991345 C T WDR18 Missense_Mutation p.L309F 0.88 tolerated(0.16) benign(0.171) TCGA-3B-A9HY-01 1 100154947 100154947 G A PALMD Silent p.G377G 0.36 TCGA-3B-A9HY-01 1 152192912 152192912 G A HRNR Missense_Mutation p.S398F 0.30 unknown(0) TCGA-3B-A9HY-01 1 32625019 32625019 C T KPNA6 Silent p.L149L 0.27 TCGA-3B-A9HY-01 1 36031357 36031357 C T NCDN 3'UTR 0.35 TCGA-3B-A9HY-01 1 38082190 38082190 G T RSPO1 Missense_Mutation p.F84L 0.19 deleterious(0.01) benign(0.196) TCGA-3B-A9HY-01 1 63113413 63113413 A T DOCK7 Missense_Mutation p.I256K 0.35 tolerated(0.07) benign(0.038) TCGA-3B-A9HY-01 20 62699435 62699435 G A TCEA2 Missense_Mutation p.G93S 0.33 tolerated(0.65) benign(0.002) TCGA-3B-A9HY-01 20 62699436 62699436 G A TCEA2 Missense_Mutation p.G93D 0.38 tolerated(0.3) benign(0.002) TCGA-3B-A9HY-01 20 853735 853735 T A ANGPT4 Silent p.S460S 0.38 TCGA-3B-A9HY-01 21 31768501 31768501 A C KRTAP13-1 Missense_Mutation p.N33H 0.40 tolerated(0.07) benign(0.33) TCGA-3B-A9HY-01 22 24179015 24179015 G T DERL3 Intron 0.15 TCGA-3B-A9HY-01 22 31602091 31602092 - T RNF185 3'UTR 0.23 TCGA-3B-A9HY-01 22 43972249 43972249 T - EFCAB6 Frame_Shift_Del p.K1116Nfs*2 0.23 TCGA-3B-A9HY-01 22 50664366 50664366 G T TUBGCP6 Missense_Mutation p.L614I 0.17 tolerated(0.89) benign(0.23) TCGA-3B-A9HY-01 22 50717058 50717058 C T PLXNB2 Silent p.R1538R 0.44 TCGA-3B-A9HY-01 2 124999804 124999804 C A CNTNAP5 Missense_Mutation p.S72Y 0.51 deleterious(0) probably_damaging(1) TCGA-3B-A9HY-01 2 175439998 175439998 G A WIPF1 Missense_Mutation p.P98S 0.47 tolerated(0.19) probably_damaging(0.998) TCGA-3B-A9HY-01 2 233127949 233127949 C G DIS3L2 Missense_Mutation p.I486M 0.41 deleterious(0.02) probably_damaging(0.974) TCGA-3B-A9HY-01 2 233127950 233127950 C T DIS3L2 Missense_Mutation p.R487C 0.39 tolerated(0.14) benign(0.013) TCGA-3B-A9HY-01 2 242573427 242573427 G T THAP4 Missense_Mutation p.P49T 0.41 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3B-A9HY-01 2 26707374 26707374 C G OTOF Missense_Mutation p.K391N 0.84 deleterious(0) probably_damaging(1) TCGA-3B-A9HY-01 2 27556623 27556623 C A GTF3C2 Missense_Mutation p.G544V 0.24 deleterious(0) probably_damaging(0.974) TCGA-3B-A9HY-01 2 60687866 60687866 A T BCL11A Silent p.G727G 0.79 TCGA-3B-A9HY-01 3 195785483 195785483 C A TFRC Silent p.G519G 0.38 TCGA-3B-A9HY-01 4 104084678 104084678 C T CENPE Silent p.K560K 0.24 TCGA-3B-A9HY-01 4 6066655 6066655 T C JAKMIP1 Silent p.T461T 0.33 TCGA-3B-A9HY-01 5 140186934 140186934 G A PCDHA4 Silent p.L54L 0.38 TCGA-3B-A9HY-01 5 140187574 140187574 G C PCDHA4 Missense_Mutation p.D268H 0.50 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-3B-A9HY-01 5 140187703 140187703 G A PCDHA4 Missense_Mutation p.E311K 0.49 deleterious_low_confidence(0) probably_damaging(1) TCGA-3B-A9HY-01 5 140187742 140187742 G C PCDHA4 Missense_Mutation p.D324H 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-3B-A9HY-01 5 140188483 140188483 G C PCDHA4 Missense_Mutation p.G571R 0.41 tolerated_low_confidence(0.07) benign(0.009) TCGA-3B-A9HY-01 6 114379226 114379226 T G HS3ST5 Missense_Mutation p.E79A 0.35 tolerated(0.34) benign(0.005) TCGA-3B-A9HY-01 6 114379227 114379227 C T HS3ST5 Missense_Mutation p.E79K 0.39 tolerated(0.37) benign(0.046) TCGA-3B-A9HY-01 6 32006170 32006170 G A CYP21A2 5'UTR 0.64 TCGA-3B-A9HY-01 6 64424068 64424068 C T PHF3 3'UTR 0.36 TCGA-3B-A9HY-01 6 96662562 96662562 G A FUT9 3'UTR 0.40 TCGA-3B-A9HY-01 7 149170082 149170082 G T ZNF746 3'UTR 0.22 TCGA-3B-A9HY-01 7 150752624 150752624 C T CDK5 Missense_Mutation p.A160T 0.16 deleterious(0.01) possibly_damaging(0.78) TCGA-3B-A9HY-01 7 48626863 48626863 G A ABCA13 Silent p.G4873G 0.34 TCGA-3B-A9HY-01 8 105510058 105510058 C T LRP12 Missense_Mutation p.G241E 0.47 deleterious(0) probably_damaging(0.978) TCGA-3B-A9HY-01 8 105510059 105510059 C T LRP12 Missense_Mutation p.G241R 0.46 deleterious(0.01) possibly_damaging(0.679) TCGA-3B-A9HY-01 8 133931621 133931621 T G TG Missense_Mutation p.V1460G 0.43 deleterious(0) probably_damaging(0.974) TCGA-3B-A9HY-01 8 22145080 22145080 G A PIWIL2 Silent p.L261L 0.40 TCGA-3B-A9HY-01 8 22451416 22451416 G A PDLIM2 Missense_Mutation p.R601Q 0.22 tolerated_low_confidence(0.4) benign(0.014) TCGA-3B-A9HY-01 8 55540104 55540104 C T RP1 Missense_Mutation p.P1221L 0.35 tolerated(0.18) benign(0.021) TCGA-3B-A9HY-01 8 86194697 86194697 G A CA13 3'UTR 0.33 TCGA-3B-A9HY-01 8 86194698 86194698 G A CA13 3'UTR 0.33 TCGA-3B-A9HY-01 X 75004715 75004715 T G MAGEE2 Missense_Mutation p.T58P 0.55 tolerated(0.26) benign(0.032) TCGA-3B-A9HZ-01 10 89692791 89692791 A T PTEN Missense_Mutation p.D92V 0.45 deleterious(0) probably_damaging(1) TCGA-3B-A9HZ-01 11 107662001 107662001 G T SLC35F2 3'UTR 0.20 TCGA-3B-A9HZ-01 11 118034083 118034083 A G SCN2B 3'UTR 0.25 TCGA-3B-A9HZ-01 11 35513631 35513631 G A PAMR1 Missense_Mutation p.A114V 0.10 deleterious(0.01) probably_damaging(0.947) TCGA-3B-A9HZ-01 11 56020527 56020527 A C OR5T3 Silent p.T284T 0.05 TCGA-3B-A9HZ-01 11 93463686 93463686 T G KIAA1731 3'Flank 0.19 TCGA-3B-A9HZ-01 12 57642821 57642821 C A STAC3 Intron 0.15 TCGA-3B-A9HZ-01 12 7636086 7636086 C A CD163 Nonsense_Mutation p.G989* 0.30 TCGA-3B-A9HZ-01 13 25160760 25160760 C T RP11-556N21.1 RNA 0.56 TCGA-3B-A9HZ-01 13 99540638 99540638 G A DOCK9 Silent p.Y651Y 0.05 TCGA-3B-A9HZ-01 14 91787608 91787608 C T CCDC88C Silent p.A461A 0.25 TCGA-3B-A9HZ-01 15 56535479 56535479 G A RFX7 Missense_Mutation p.A2V 0.25 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-3B-A9HZ-01 16 19663381 19663381 G T C16orf62 Missense_Mutation p.Q819H 0.41 deleterious(0) possibly_damaging(0.904) TCGA-3B-A9HZ-01 16 23119385 23119387 ACT - USP31 In_Frame_Del p.S251del 0.28 TCGA-3B-A9HZ-01 16 3486598 3486598 C A ZNF597 Missense_Mutation p.R367S 0.07 deleterious(0) benign(0.033) TCGA-3B-A9HZ-01 16 53691422 53691422 C T RPGRIP1L Silent p.E508E 0.48 TCGA-3B-A9HZ-01 17 48172699 48172699 G A PDK2 5'UTR 0.15 TCGA-3B-A9HZ-01 17 73231845 73231845 G C NUP85 3'UTR 0.34 TCGA-3B-A9HZ-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.47 deleterious(0) probably_damaging(0.994) TCGA-3B-A9HZ-01 18 13056253 13056253 G A CEP192 Missense_Mutation p.E1222K 0.41 tolerated(0.24) benign(0.055) TCGA-3B-A9HZ-01 19 15132444 15132444 C T CCDC105 Missense_Mutation p.T353M 0.32 tolerated(0.12) benign(0.187) TCGA-3B-A9HZ-01 19 54972671 54972671 C G LENG8 3'UTR 0.33 TCGA-3B-A9HZ-01 1 10042481 10042481 C T NMNAT1 Missense_Mutation p.R188W 0.16 deleterious(0) probably_damaging(0.996) TCGA-3B-A9HZ-01 1 113229666 113229666 G A MOV10 Intron 0.37 TCGA-3B-A9HZ-01 1 117530053 117530053 C T PTGFRN 3'UTR 0.15 TCGA-3B-A9HZ-01 1 196654214 196654214 T A CFH Missense_Mutation p.Y271N 0.36 tolerated(0.27) benign(0.171) TCGA-3B-A9HZ-01 1 228527787 228527787 C T OBSCN Silent p.I6757I 0.33 TCGA-3B-A9HZ-01 20 30193128 30193128 C T ID1 5'UTR 0.27 TCGA-3B-A9HZ-01 20 30433410 30433410 G A FOXS1 5'UTR 0.27 TCGA-3B-A9HZ-01 20 43836987 43836987 C G SEMG1 Missense_Mutation p.S350C 0.26 tolerated(0.13) probably_damaging(0.999) TCGA-3B-A9HZ-01 22 39917546 39917546 T G ATF4 Silent p.G32G 0.19 TCGA-3B-A9HZ-01 2 135957654 135957654 C T ZRANB3 3'UTR 0.31 TCGA-3B-A9HZ-01 2 170065981 170065981 C A LRP2 Missense_Mutation p.A2151S 0.27 probably_damaging(0.987) TCGA-3B-A9HZ-01 2 219825438 219825438 G T CDK5R2 Missense_Mutation p.R299L 0.16 tolerated(0.34) benign(0.285) TCGA-3B-A9HZ-01 2 231860873 231860873 A T SPATA3 5'UTR 0.46 TCGA-3B-A9HZ-01 2 239170424 239170424 G C PER2 Silent p.A454A 0.35 TCGA-3B-A9HZ-01 2 26750774 26750774 C T OTOF Silent p.P51P 0.48 TCGA-3B-A9HZ-01 3 142277619 142277619 C T ATR Splice_Site p.X578_splice 0.33 TCGA-3B-A9HZ-01 3 48587370 48587370 G A PFKFB4 Missense_Mutation p.R80W 0.38 probably_damaging(0.999) TCGA-3B-A9HZ-01 3 49967152 49967152 G A MON1A Silent p.R56R 0.39 TCGA-3B-A9HZ-01 4 57843743 57843743 G C NOA1 Silent p.P3P 0.24 TCGA-3B-A9HZ-01 5 100192092 100192092 A T ST8SIA4 Missense_Mutation p.L171Q 0.36 probably_damaging(0.992) TCGA-3B-A9HZ-01 5 126774171 126774171 G A MEGF10 Silent p.T715T 0.32 TCGA-3B-A9HZ-01 5 154252173 154252173 T G CNOT8 Missense_Mutation p.S231A 0.25 tolerated(0.1) benign(0.32) TCGA-3B-A9HZ-01 5 172590744 172590744 G A BNIP1 Silent p.T212T 0.06 TCGA-3B-A9HZ-01 5 32711981 32711981 C T NPR3 Silent p.G33G 0.06 TCGA-3B-A9HZ-01 5 53182097 53182097 G A ARL15 3'UTR 0.07 TCGA-3B-A9HZ-01 5 96271359 96271359 G A LNPEP 5'UTR 0.08 TCGA-3B-A9HZ-01 6 111588128 111588128 G A KIAA1919 Missense_Mutation p.E455K 0.26 deleterious(0.02) benign(0.036) TCGA-3B-A9HZ-01 6 111588190 111588190 G A KIAA1919 Silent p.L475L 0.22 TCGA-3B-A9HZ-01 6 32006194 32006194 C T CYP21A2 5'UTR 0.23 TCGA-3B-A9HZ-01 6 38835893 38835893 C G DNAH8 Missense_Mutation p.S2033C 0.34 possibly_damaging(0.519) TCGA-3B-A9HZ-01 6 45514992 45514992 G T RUNX2 Missense_Mutation p.V506F 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-3B-A9HZ-01 6 53512798 53512798 T C KLHL31 3'UTR 0.33 TCGA-3B-A9HZ-01 7 127668846 127668846 G T LRRC4 Silent p.A616A 0.31 TCGA-3B-A9HZ-01 7 127668847 127668847 G A LRRC4 Missense_Mutation p.A616V 0.31 tolerated_low_confidence(0.19) benign(0.334) TCGA-3B-A9HZ-01 7 128526723 128526723 A T KCP RNA 0.32 TCGA-3B-A9HZ-01 7 2959095 2959095 C T CARD11 Missense_Mutation p.M807I 0.23 tolerated(0.26) benign(0.044) TCGA-3B-A9HZ-01 7 31120238 31120238 C T ADCYAP1R1 Silent p.T92T 0.42 TCGA-3B-A9HZ-01 9 140080800 140080800 A C ANAPC2 Missense_Mutation p.L250R 0.39 deleterious(0) probably_damaging(0.99) TCGA-3B-A9I0-01 11 120291478 120291478 C T ARHGEF12 Silent p.C72C 0.08 TCGA-3B-A9I0-01 11 62519651 62519651 G A ZBTB3 Missense_Mutation p.L546F 0.11 tolerated_low_confidence(0.16) benign(0.117) TCGA-3B-A9I0-01 11 83874501 83874501 T C DLG2 Intron 0.30 TCGA-3B-A9I0-01 11 85373022 85373022 A G CREBZF 3'UTR 0.05 TCGA-3B-A9I0-01 13 48919300 48919300 T A RB1 Nonsense_Mutation p.Y155* 0.65 TCGA-3B-A9I0-01 14 24030418 24030424 CCATGAG - AP1G2 Intron 0.45 TCGA-3B-A9I0-01 15 22473062 22473062 T C IGHV4OR15-8 Missense_Mutation p.E70G 0.09 tolerated(0.33) benign(0) TCGA-3B-A9I0-01 16 29808222 29808222 C T KIF22 Missense_Mutation p.R27C 0.32 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-3B-A9I0-01 16 30976472 30976472 C T SETD1A Missense_Mutation p.S470F 0.33 possibly_damaging(0.831) TCGA-3B-A9I0-01 17 7578271 7578273 TGC - TP53 In_Frame_Del p.Q192del 0.75 TCGA-3B-A9I0-01 18 24436401 24436401 T C AQP4 Missense_Mutation p.E249G 0.57 tolerated(0.08) probably_damaging(0.962) TCGA-3B-A9I0-01 18 64235825 64235825 A G CDH19 Silent p.D106D 0.25 TCGA-3B-A9I0-01 19 1111506 1111506 C G SBNO2 Silent p.R936R 0.17 TCGA-3B-A9I0-01 19 11277131 11277131 G A KANK2 3'UTR 0.31 TCGA-3B-A9I0-01 19 12501874 12501874 C G ZNF799 Missense_Mutation p.E446D 0.07 tolerated(0.2) benign(0.007) TCGA-3B-A9I0-01 19 21610042 21610042 T A ZNF493 3'UTR 0.35 TCGA-3B-A9I0-01 19 40541887 40541887 A T ZNF780B Silent p.I293I 0.10 TCGA-3B-A9I0-01 19 58991842 58991842 G A ZNF446 Missense_Mutation p.G368R 0.50 tolerated(0.28) probably_damaging(0.92) TCGA-3B-A9I0-01 1 15541908 15541908 C T TMEM51 Missense_Mutation p.H109Y 0.45 tolerated(1) benign(0.169) TCGA-3B-A9I0-01 1 168698150 168698150 G A DPT Missense_Mutation p.T88M 0.53 deleterious(0.01) possibly_damaging(0.738) TCGA-3B-A9I0-01 1 221058338 221058338 C G HLX 3'UTR 0.40 TCGA-3B-A9I0-01 1 39500094 39500094 C T NDUFS5 Missense_Mutation p.R83W 0.06 tolerated(0.1) benign(0.002) TCGA-3B-A9I0-01 1 94037299 94037299 C T BCAR3 Silent p.A634A 0.17 TCGA-3B-A9I0-01 20 21687507 21687507 C A PAX1 Missense_Mutation p.P240T 0.82 deleterious(0.02) benign(0.024) TCGA-3B-A9I0-01 20 51588957 51588957 C T TSHZ2 5'UTR 0.16 TCGA-3B-A9I0-01 21 39671215 39671215 C A KCNJ15 Missense_Mutation p.T11N 0.34 tolerated_low_confidence(0.52) benign(0) TCGA-3B-A9I0-01 22 28397653 28397653 C T TTC28 Intron 0.38 TCGA-3B-A9I0-01 22 30890890 30890890 T C SEC14L4 Missense_Mutation p.K161R 0.38 tolerated(0.44) benign(0.002) TCGA-3B-A9I0-01 3 129247673 129247673 G A RHO Missense_Mutation p.E33K 0.33 tolerated(0.12) benign(0.38) TCGA-3B-A9I0-01 4 36345327 36345327 C T DTHD1 Missense_Mutation p.L743F 0.41 deleterious(0.01) probably_damaging(1) TCGA-3B-A9I0-01 4 69978489 69978489 G A UGT2B7 3'UTR 0.42 TCGA-3B-A9I0-01 5 134192540 134192540 C T C5orf24 3'UTR 0.38 TCGA-3B-A9I0-01 5 140783160 140783160 C T PCDHGA9 Missense_Mutation p.A214V 0.44 deleterious_low_confidence(0) probably_damaging(1) TCGA-3B-A9I0-01 5 54586147 54586147 G A DHX29 Missense_Mutation p.A269V 0.50 deleterious(0.05) benign(0.33) TCGA-3B-A9I0-01 5 76696083 76696083 T G PDE8B Missense_Mutation p.I393S 0.05 tolerated(0.14) benign(0.001) TCGA-3B-A9I0-01 6 122768037 122768037 C T SERINC1 Missense_Mutation p.D370N 0.47 tolerated(0.39) benign(0.007) TCGA-3B-A9I0-01 6 128294875 128294875 A T PTPRK Missense_Mutation p.I1362K 0.36 deleterious(0) possibly_damaging(0.571) TCGA-3B-A9I0-01 6 32185035 32185035 C T NOTCH4 Missense_Mutation p.G545S 0.31 deleterious(0) probably_damaging(1) TCGA-3B-A9I0-01 7 71252851 71252851 C T CALN1 Missense_Mutation p.R232Q 0.28 deleterious(0) probably_damaging(0.986) TCGA-3B-A9I0-01 8 17612954 17612954 A C MTUS1 Missense_Mutation p.C121W 0.48 deleterious(0.02) possibly_damaging(0.849) TCGA-3B-A9I0-01 8 3008950 3008950 G T CSMD1 Nonsense_Mutation p.C2000* 0.19 TCGA-3B-A9I0-01 8 33247235 33247235 T C FUT10 Missense_Mutation p.K153R 0.47 deleterious(0.03) probably_damaging(1) TCGA-3B-A9I1-01 10 102258919 102258919 G C SEC31B Missense_Mutation p.Q528E 0.42 tolerated(0.47) benign(0.024) TCGA-3B-A9I1-01 11 102708089 102708089 G C MMP3 Missense_Mutation p.Q425E 0.27 tolerated(0.99) benign(0.005) TCGA-3B-A9I1-01 11 119032070 119032070 C T ABCG4 3'UTR 0.55 TCGA-3B-A9I1-01 11 1718866 1718866 G A KRTAP5-6 3'UTR 0.64 TCGA-3B-A9I1-01 11 605246 605246 G T PHRF1 Missense_Mutation p.G427V 0.47 deleterious(0) probably_damaging(1) TCGA-3B-A9I1-01 13 31034821 31034821 A G HMGB1 3'UTR 0.15 TCGA-3B-A9I1-01 13 61103259 61103260 - A TDRD3 Frame_Shift_Ins p.I636Nfs*19 0.11 TCGA-3B-A9I1-01 14 19984998 19984998 C T POTEM 3'UTR 0.20 TCGA-3B-A9I1-01 15 99456289 99456289 A G IGF1R Missense_Mutation p.T536A 0.48 deleterious(0) probably_damaging(0.96) TCGA-3B-A9I1-01 16 15797882 15797882 T C MYH11 Missense_Mutation p.D1969G 0.61 benign(0.08) TCGA-3B-A9I1-01 16 67575479 67575479 G A FAM65A Nonsense_Mutation p.W336* 0.86 TCGA-3B-A9I1-01 16 69337552 69337552 T G SNTB2 3'UTR 0.91 TCGA-3B-A9I1-01 17 16256372 16256372 C A CENPV Nonsense_Mutation p.E127* 0.25 TCGA-3B-A9I1-01 17 48470220 48470220 G A LRRC59 Silent p.D68D 0.09 TCGA-3B-A9I1-01 17 65029044 65029044 G A CACNG4 3'UTR 0.48 TCGA-3B-A9I1-01 17 7577551 7577551 C T TP53 Missense_Mutation p.G244S 0.91 deleterious(0) probably_damaging(1) TCGA-3B-A9I1-01 17 79257271 79257271 C T SLC38A10 Missense_Mutation p.A99T 0.11 tolerated(0.06) probably_damaging(0.972) TCGA-3B-A9I1-01 19 17951086 17951086 G A JAK3 Missense_Mutation p.R403C 0.36 deleterious(0.04) benign(0.021) TCGA-3B-A9I1-01 1 109444543 109444543 C T GPSM2 Missense_Mutation p.A310V 0.48 tolerated(0.81) benign(0.001) TCGA-3B-A9I1-01 1 14108622 14108622 C G PRDM2 Silent p.A1444A 0.07 TCGA-3B-A9I1-01 1 155295207 155295207 C T RUSC1 Missense_Mutation p.P545L 0.48 deleterious(0) probably_damaging(1) TCGA-3B-A9I1-01 1 211654459 211654459 C T RD3 Intron 0.17 TCGA-3B-A9I1-01 1 236958809 236958809 G A MTR 5'UTR 0.50 TCGA-3B-A9I1-01 1 39990865 39990865 C A BMP8A Intron 0.41 TCGA-3B-A9I1-01 1 93720031 93720031 G C CCDC18 Missense_Mutation p.E1121Q 0.05 deleterious(0.03) possibly_damaging(0.691) TCGA-3B-A9I1-01 20 61340995 61340995 T C NTSR1 Missense_Mutation p.F146L 0.31 tolerated(0.09) probably_damaging(0.992) TCGA-3B-A9I1-01 21 46047916 46047916 C A KRTAP10-9 Nonsense_Mutation p.C276* 0.44 TCGA-3B-A9I1-01 22 42154406 42154406 G T MEI1 Silent p.L663L 0.69 TCGA-3B-A9I1-01 2 109384558 109384558 T A RANBP2 Silent p.V2521V 0.44 TCGA-3B-A9I1-01 2 149240712 149240712 C T MBD5 Missense_Mutation p.A851V 0.26 deleterious(0) possibly_damaging(0.695) TCGA-3B-A9I1-01 2 163279793 163279793 G A KCNH7 Intron 0.11 TCGA-3B-A9I1-01 2 85771669 85771669 C G MAT2A 3'UTR 0.30 TCGA-3B-A9I1-01 3 155215120 155215120 A G PLCH1 Missense_Mutation p.I616T 0.41 deleterious(0.01) possibly_damaging(0.672) TCGA-3B-A9I1-01 3 48581056 48581056 C T PFKFB4 Missense_Mutation p.R112H 0.61 benign(0.001) TCGA-3B-A9I1-01 3 51419208 51419208 T G DOCK3 3'UTR 0.54 TCGA-3B-A9I1-01 4 166910546 166910546 C T TLL1 Silent p.G61G 0.46 TCGA-3B-A9I1-01 4 189063511 189063511 G T TRIML1 Nonsense_Mutation p.E204* 0.46 TCGA-3B-A9I1-01 4 26364118 26364118 G A RBPJ Intron 0.52 TCGA-3B-A9I1-01 4 56865763 56865763 T C CEP135 Silent p.D744D 0.22 TCGA-3B-A9I1-01 6 106557307 106557307 A G PRDM1 3'UTR 0.36 TCGA-3B-A9I1-01 6 117737431 117737431 G C ROS1 Missense_Mutation p.A73G 0.52 tolerated(0.3) benign(0.285) TCGA-3B-A9I1-01 7 149477097 149477097 G C SSPO RNA 0.13 TCGA-3B-A9I1-01 7 2581443 2581443 G A BRAT1 Missense_Mutation p.A348V 0.68 deleterious(0.02) benign(0.079) TCGA-3B-A9I1-01 8 25178516 25178516 A G DOCK5 Silent p.E521E 0.10 TCGA-3B-A9I1-01 8 39613417 39613417 C T ADAM2 Missense_Mutation p.G543R 0.49 deleterious(0) probably_damaging(0.996) TCGA-3B-A9I1-01 8 55541768 55541768 C A RP1 Missense_Mutation p.L1776I 0.48 tolerated(0.09) benign(0.091) TCGA-3B-A9I1-01 9 43627588 43627588 C T SPATA31A6 Missense_Mutation p.A367T 0.91 deleterious(0.01) benign(0.001) TCGA-3B-A9I1-01 X 148074581 148074581 A C AFF2 3'UTR 0.68 TCGA-3B-A9I1-01 X 52681341 52681341 C T SSX7 Missense_Mutation p.G81R 0.67 tolerated(0.16) benign(0.077) TCGA-3B-A9I1-01 X 76938581 76938581 C A ATRX Nonsense_Mutation p.E723* 0.60 TCGA-3B-A9I1-01 X 84363261 84363261 C T SATL1 Silent p.K238K 0.34 TCGA-3B-A9I3-01 10 30317993 30317993 C A KIAA1462 Missense_Mutation p.V362L 0.11 tolerated(0.08) benign(0.067) TCGA-3B-A9I3-01 10 49951578 49951578 C G WDFY4 Missense_Mutation p.P815R 0.29 tolerated(0.06) benign(0.439) TCGA-3B-A9I3-01 10 55568823 55568823 T C PCDH15 Missense_Mutation p.R597G 0.15 deleterious_low_confidence(0) unknown(0) TCGA-3B-A9I3-01 10 85933551 85933551 G T C10orf99 5'UTR 0.14 TCGA-3B-A9I3-01 10 85978986 85978986 T A CDHR1 3'Flank 0.22 TCGA-3B-A9I3-01 11 125221274 125221274 C A PKNOX2 Missense_Mutation p.Q25K 0.25 tolerated_low_confidence(0.06) benign(0.41) TCGA-3B-A9I3-01 11 55541664 55541664 A G OR5D13 Missense_Mutation p.T251A 0.11 tolerated(0.07) benign(0.139) TCGA-3B-A9I3-01 12 49360194 49360194 A T WNT10B Missense_Mutation p.I285N 0.13 deleterious(0) possibly_damaging(0.876) TCGA-3B-A9I3-01 13 114773080 114773080 G C RASA3 Missense_Mutation p.F557L 0.22 deleterious(0.01) benign(0.323) TCGA-3B-A9I3-01 13 25743001 25743001 C A AMER2 3'Flank 0.06 TCGA-3B-A9I3-01 13 39265091 39265091 A C FREM2 Missense_Mutation p.M1204L 0.34 tolerated(0.08) benign(0.041) TCGA-3B-A9I3-01 13 49050980 49050980 G A RB1 Splice_Site p.X888_splice 0.19 TCGA-3B-A9I3-01 15 43749174 43749174 A T TP53BP1 Missense_Mutation p.D544E 0.09 tolerated(0.07) possibly_damaging(0.833) TCGA-3B-A9I3-01 16 16205244 16205244 G A ABCC1 Missense_Mutation p.V962M 0.10 tolerated(0.2) probably_damaging(0.968) TCGA-3B-A9I3-01 17 16330760 16330760 C T TRPV2 Intron 0.15 TCGA-3B-A9I3-01 17 74946335 74946335 C T MGAT5B 3'UTR 0.14 TCGA-3B-A9I3-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.24 tolerated(0.11) benign(0.308) TCGA-3B-A9I3-01 18 44173692 44173692 G A LOXHD1 Silent p.T434T 0.18 TCGA-3B-A9I3-01 18 47455929 47455929 G A MYO5B Silent p.C681C 0.18 TCGA-3B-A9I3-01 19 36393427 36393427 C T HCST 5'UTR 0.07 TCGA-3B-A9I3-01 19 4816340 4816340 C T TICAM1 Missense_Mutation p.A684T 0.14 deleterious(0) probably_damaging(1) TCGA-3B-A9I3-01 1 10423402 10423402 G A KIF1B Missense_Mutation p.G1410S 0.16 deleterious(0) possibly_damaging(0.475) TCGA-3B-A9I3-01 1 116206547 116206547 C T VANGL1 Missense_Mutation p.A157V 0.19 deleterious(0) possibly_damaging(0.468) TCGA-3B-A9I3-01 1 147381178 147381178 G A GJA8 Missense_Mutation p.V366M 0.06 tolerated(0.08) possibly_damaging(0.592) TCGA-3B-A9I3-01 1 150772185 150772185 C T CTSK Missense_Mutation p.E207K 0.20 deleterious(0.01) benign(0.039) TCGA-3B-A9I3-01 1 153430303 153430303 G A S100A7 Silent p.P95P 0.12 TCGA-3B-A9I3-01 1 172356396 172356396 G A DNM3 Missense_Mutation p.A728T 0.25 tolerated(0.18) possibly_damaging(0.645) TCGA-3B-A9I3-01 1 201044742 201044742 A G CACNA1S Missense_Mutation p.V610A 0.09 deleterious(0) possibly_damaging(0.491) TCGA-3B-A9I3-01 1 39988126 39988126 A T BMP8A Missense_Mutation p.Y307F 0.11 deleterious(0.04) probably_damaging(0.98) TCGA-3B-A9I3-01 1 54665678 54665678 G A CYB5RL 5'Flank 0.60 TCGA-3B-A9I3-01 1 75608895 75608895 G A LHX8 Missense_Mutation p.C161Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-3B-A9I3-01 1 79472348 79472348 G C ELTD1 5'UTR 0.05 TCGA-3B-A9I3-01 20 1212265 1212265 T A RAD21L1 Splice_Site p.X123_splice 0.18 TCGA-3B-A9I3-01 20 14304758 14304758 A G FLRT3 3'UTR 0.22 TCGA-3B-A9I3-01 20 43926658 43926658 G A MATN4 Silent p.R493R 0.23 TCGA-3B-A9I3-01 20 4836257 4836257 C T SLC23A2 3'UTR 0.19 TCGA-3B-A9I3-01 21 43711222 43711222 T A ABCG1 Missense_Mutation p.F484I 0.18 deleterious(0.03) possibly_damaging(0.838) TCGA-3B-A9I3-01 22 39811644 39811644 C T TAB1 Missense_Mutation p.R104C 0.22 deleterious(0.01) possibly_damaging(0.898) TCGA-3B-A9I3-01 2 141641542 141641542 T C LRP1B Missense_Mutation p.E1338G 0.20 benign(0.006) TCGA-3B-A9I3-01 2 210892036 210892036 T C KANSL1L Missense_Mutation p.N812S 0.13 tolerated(0.2) benign(0.138) TCGA-3B-A9I3-01 2 27121440 27121440 G A DPYSL5 Missense_Mutation p.E25K 0.07 tolerated(0.31) benign(0.353) TCGA-3B-A9I3-01 2 63220800 63220800 C G EHBP1 Missense_Mutation p.P1028A 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-3B-A9I3-01 2 74007085 74007085 T C DUSP11 Missense_Mutation p.H53R 0.07 tolerated(0.1) benign(0.004) TCGA-3B-A9I3-01 2 79364441 79364441 T C REG1P RNA 0.25 TCGA-3B-A9I3-01 2 89084352 89084352 T A ANKRD36BP2 RNA 0.18 TCGA-3B-A9I3-01 2 89084354 89084354 G A ANKRD36BP2 RNA 0.19 TCGA-3B-A9I3-01 2 95753147 95753147 T A MRPS5 Silent p.G416G 0.25 TCGA-3B-A9I3-01 3 107647011 107647011 A C LINC00636 RNA 0.22 TCGA-3B-A9I3-01 3 120115486 120115486 G A FSTL1 3'UTR 0.16 TCGA-3B-A9I3-01 3 129824431 129824431 G A FAM86HP RNA 0.05 TCGA-3B-A9I3-01 4 187630313 187630313 G T FAT1 Silent p.L223L 0.29 TCGA-3B-A9I3-01 4 73957699 73957699 T C ANKRD17 Silent p.P1882P 0.25 TCGA-3B-A9I3-01 4 74481640 74481640 A G RASSF6 Intron 0.27 TCGA-3B-A9I3-01 4 77357347 77357347 C T SHROOM3 Missense_Mutation p.H48Y 0.14 deleterious(0) benign(0.066) TCGA-3B-A9I3-01 4 92520203 92520203 G A CCSER1 Missense_Mutation p.G900R 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3B-A9I3-01 5 102486984 102486984 C A PPIP5K2 Silent p.R312R 0.20 TCGA-3B-A9I3-01 5 140214396 140214396 C T PCDHA7 Missense_Mutation p.A143V 0.16 tolerated_low_confidence(0.17) benign(0.097) TCGA-3B-A9I3-01 5 216901 216901 C T CCDC127 Missense_Mutation p.D22N 0.13 tolerated(0.11) possibly_damaging(0.607) TCGA-3B-A9I3-01 6 32014049 32014049 G T TNXB 5'Flank 0.47 TCGA-3B-A9I3-01 7 100804330 100804330 C G AP1S1 3'UTR 0.19 TCGA-3B-A9I3-01 7 25267967 25267967 A C NPVF Missense_Mutation p.V31G 0.26 deleterious(0) benign(0.014) TCGA-3B-A9I3-01 7 99802287 99802287 G T STAG3 Missense_Mutation p.G947V 0.15 tolerated(0.58) benign(0.006) TCGA-3B-A9I3-01 8 144621417 144621417 C T ZC3H3 Silent p.Q40Q 0.28 TCGA-3B-A9I3-01 8 145725733 145725733 G A PPP1R16A Missense_Mutation p.G222R 0.32 deleterious(0) probably_damaging(0.992) TCGA-3B-A9I3-01 8 3038705 3038705 A G CSMD1 Silent p.T1884T 0.15 TCGA-3B-A9I3-01 8 59058842 59058842 C T FAM110B Missense_Mutation p.A18V 0.21 deleterious(0.03) possibly_damaging(0.448) TCGA-3B-A9I3-01 8 75929118 75929118 C G CRISPLD1 Missense_Mutation p.Q291E 0.16 deleterious(0.03) probably_damaging(0.995) TCGA-3B-A9I3-01 9 132597501 132597501 G C C9orf78 5'UTR 0.34 TCGA-3B-A9I3-01 9 140150876 140150876 C T NELFB Missense_Mutation p.P121L 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-3B-A9I3-01 9 91606929 91606929 G A C9orf47 3'UTR 0.08 TCGA-3B-A9I3-01 X 129148224 129148224 C T BCORL1 Silent p.G492G 0.07 TCGA-3B-A9I3-01 X 14933790 14933790 G A MOSPD2 Missense_Mutation p.V364M 0.46 deleterious(0) probably_damaging(0.998) TCGA-3R-A8YX-01 10 129914188 129914188 C T MKI67 Missense_Mutation p.V162I 0.17 tolerated(0.17) benign(0.164) TCGA-3R-A8YX-01 10 67748538 67748538 T G CTNNA3 Missense_Mutation p.K726T 0.12 deleterious(0) unknown(0) TCGA-3R-A8YX-01 10 88728253 88728253 C G ADIRF 5'UTR 0.27 TCGA-3R-A8YX-01 10 95719666 95719666 G A PIPSL RNA 0.27 TCGA-3R-A8YX-01 11 102323281 102323281 G A TMEM123 Missense_Mutation p.A25V 0.75 tolerated(0.63) unknown(0) TCGA-3R-A8YX-01 11 108124767 108124767 G T ATM Splice_Site p.X708_splice 0.20 TCGA-3R-A8YX-01 11 123501307 123501307 A G SCN3B 3'UTR 0.15 TCGA-3R-A8YX-01 11 3243183 3243183 C G MRGPRG 5'Flank 0.38 TCGA-3R-A8YX-01 11 36614509 36614509 C A RAG2 Nonsense_Mutation p.E404* 0.12 TCGA-3R-A8YX-01 11 55340374 55340374 A C OR4C16 Silent p.T257T 0.62 TCGA-3R-A8YX-01 11 67074875 67074875 G C SSH3 Silent p.R190R 0.10 TCGA-3R-A8YX-01 11 67075389 67075389 G A SSH3 Silent p.L288L 0.07 TCGA-3R-A8YX-01 11 67075390 67075390 G A SSH3 Missense_Mutation p.E289K 0.07 deleterious(0) possibly_damaging(0.861) TCGA-3R-A8YX-01 12 109895815 109895816 AA - KCTD10 Frame_Shift_Del p.L152Hfs*6 0.20 TCGA-3R-A8YX-01 12 120569000 120569000 T C GCN1L1 Missense_Mutation p.T2518A 0.38 benign(0.001) TCGA-3R-A8YX-01 12 27933440 27933440 G A KLHL42 Silent p.A59A 0.30 TCGA-3R-A8YX-01 12 64057604 64057605 AA - DPY19L2 Frame_Shift_Del p.F128* 0.17 TCGA-3R-A8YX-01 12 69964267 69964267 G A FRS2 Missense_Mutation p.E75K 0.10 deleterious(0.03) probably_damaging(0.91) TCGA-3R-A8YX-01 12 75723797 75723797 G T CAPS2 5'UTR 0.19 TCGA-3R-A8YX-01 12 75728540 75728540 G A GLIPR1L1 Nonsense_Mutation p.W11* 0.21 TCGA-3R-A8YX-01 12 75728541 75728541 G T GLIPR1L1 Missense_Mutation p.W11C 0.21 deleterious(0) probably_damaging(1) TCGA-3R-A8YX-01 13 25671937 25671937 T A PABPC3 Missense_Mutation p.V534E 0.65 tolerated(0.13) benign(0.29) TCGA-3R-A8YX-01 14 107170396 107170396 T G IGHV1-69 5'UTR 0.09 TCGA-3R-A8YX-01 15 41571662 41571662 C T CHP1 3'UTR 0.13 TCGA-3R-A8YX-01 15 64204333 64204333 T C DAPK2 Missense_Mutation p.K308E 0.37 deleterious(0.01) benign(0.046) TCGA-3R-A8YX-01 15 69706766 69706766 G A KIF23 5'UTR 0.21 TCGA-3R-A8YX-01 15 72459382 72459382 G A GRAMD2 Missense_Mutation p.R142W 0.25 deleterious(0.02) probably_damaging(1) TCGA-3R-A8YX-01 16 68934404 68934404 T C TANGO6 Missense_Mutation p.L482P 0.05 deleterious(0) probably_damaging(0.954) TCGA-3R-A8YX-01 16 88705016 88705016 C T IL17C 5'UTR 0.24 TCGA-3R-A8YX-01 17 10399759 10399759 G C MYH1 Missense_Mutation p.D1588E 0.08 tolerated(1) benign(0.015) TCGA-3R-A8YX-01 17 73759480 73759480 T G GALK1 Silent p.S132S 0.28 TCGA-3R-A8YX-01 17 78169122 78169122 T C CARD14 Missense_Mutation p.W497R 0.09 tolerated(0.35) benign(0.032) TCGA-3R-A8YX-01 19 20748581 20748581 C A ZNF737 5'Flank 0.10 TCGA-3R-A8YX-01 19 30303609 30303609 C T CCNE1 Missense_Mutation p.R13W 0.05 deleterious(0.02) benign(0.183) TCGA-3R-A8YX-01 19 40771228 40771228 C A AKT2 5'UTR 0.44 TCGA-3R-A8YX-01 19 45849840 45849840 G T KLC3 Missense_Mutation p.E99D 0.78 tolerated(0.15) possibly_damaging(0.832) TCGA-3R-A8YX-01 19 54378641 54378641 C T MYADM 3'UTR 0.13 TCGA-3R-A8YX-01 1 212538568 212538568 G T TMEM206 Missense_Mutation p.H409N 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.817) TCGA-3R-A8YX-01 1 228466604 228466604 C T OBSCN Silent p.T2787T 0.35 TCGA-3R-A8YX-01 1 40960772 40960772 G A ZFP69 Missense_Mutation p.D208N 0.33 tolerated(0.54) benign(0.002) TCGA-3R-A8YX-01 1 63009394 63009394 C G DOCK7 Missense_Mutation p.R930P 0.10 tolerated(0.08) probably_damaging(0.991) TCGA-3R-A8YX-01 1 6659372 6659372 C A KLHL21 Missense_Mutation p.A388S 0.28 tolerated(0.15) benign(0.222) TCGA-3R-A8YX-01 20 307372 307372 C T SOX12 Silent p.S268S 0.27 TCGA-3R-A8YX-01 20 32346565 32346565 T C ZNF341 Silent p.C320C 0.09 TCGA-3R-A8YX-01 21 16334227 16334227 G C NRIP1 3'UTR 0.07 TCGA-3R-A8YX-01 22 39887200 39887200 C G MGAT3 3'UTR 0.25 TCGA-3R-A8YX-01 22 44395249 44395249 G T PARVB Missense_Mutation p.R10I 0.17 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-3R-A8YX-01 22 50942780 50942780 A C LMF2 Silent p.P569P 0.38 TCGA-3R-A8YX-01 2 172950416 172950416 C G DLX1 Missense_Mutation p.T4S 0.11 tolerated(0.22) benign(0.014) TCGA-3R-A8YX-01 2 178592479 178592479 C T PDE11A Nonsense_Mutation p.W650* 0.11 TCGA-3R-A8YX-01 2 203972519 203972519 G T NBEAL1 Silent p.G490G 0.43 TCGA-3R-A8YX-01 2 21230301 21230301 G C APOB Missense_Mutation p.L3147V 0.06 benign(0.035) TCGA-3R-A8YX-01 2 218667435 218667435 G C TNS1 3'UTR 0.32 TCGA-3R-A8YX-01 2 227872807 227872807 T C COL4A4 Missense_Mutation p.H1579R 0.18 unknown(0) TCGA-3R-A8YX-01 3 108698399 108698399 C G MORC1 Missense_Mutation p.V814L 0.20 deleterious(0.04) benign(0.139) TCGA-3R-A8YX-01 3 157318113 157318113 C T C3orf55 3'UTR 0.49 TCGA-3R-A8YX-01 3 159557798 159557798 G A SCHIP1 5'UTR 0.56 TCGA-3R-A8YX-01 3 160395122 160395122 G C ARL14 5'UTR 0.17 TCGA-3R-A8YX-01 3 164907691 164907691 G A SLITRK3 Missense_Mutation p.P310S 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-3R-A8YX-01 3 186838932 186838932 C T RPL39L 3'UTR 0.21 TCGA-3R-A8YX-01 3 193130047 193130047 A C ATP13A4 Missense_Mutation p.F1043C 0.13 tolerated(0.14) possibly_damaging(0.885) TCGA-3R-A8YX-01 3 19492831 19492831 C T KCNH8 Missense_Mutation p.A587V 0.09 deleterious(0.04) probably_damaging(0.982) TCGA-3R-A8YX-01 3 38049508 38049508 G C PLCD1 Missense_Mutation p.Q749E 0.09 tolerated(0.19) benign(0.02) TCGA-3R-A8YX-01 3 49201198 49201198 T C CCDC71 Silent p.Q148Q 0.10 TCGA-3R-A8YX-01 3 50131159 50131159 C T RBM5 Missense_Mutation p.R64C 0.08 deleterious(0) possibly_damaging(0.689) TCGA-3R-A8YX-01 3 51315040 51315040 A T DOCK3 Missense_Mutation p.E893V 0.21 deleterious(0.01) benign(0.357) TCGA-3R-A8YX-01 3 55542496 55542496 T C ERC2 3'UTR 0.17 TCGA-3R-A8YX-01 3 62578348 62578348 T C CADPS Silent p.T467T 0.17 TCGA-3R-A8YX-01 4 104070553 104070553 G C CENPE Missense_Mutation p.Q1137E 0.29 benign(0.015) TCGA-3R-A8YX-01 4 152498908 152498908 C A FAM160A1 Missense_Mutation p.P138T 0.33 deleterious(0) probably_damaging(1) TCGA-3R-A8YX-01 4 164415938 164415938 C T TMA16 5'UTR 0.12 TCGA-3R-A8YX-01 4 189026407 189026407 C A TRIML2 5'UTR 0.21 TCGA-3R-A8YX-01 4 2043799 2043800 AG C C4orf48 Intron 0.10 TCGA-3R-A8YX-01 4 48990511 48990511 C T CWH43 Missense_Mutation p.L21F 0.10 tolerated(0.07) possibly_damaging(0.73) TCGA-3R-A8YX-01 4 73941996 73941996 T A ANKRD17 Silent p.G2588G 0.15 TCGA-3R-A8YX-01 5 140503455 140503455 C A PCDHB4 Silent p.T625T 0.15 TCGA-3R-A8YX-01 5 140559053 140559053 G C PCDHB8 Missense_Mutation p.D480H 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-3R-A8YX-01 5 1589412 1589412 A G SDHAP3 RNA 0.10 TCGA-3R-A8YX-01 5 177665130 177665130 G C COL23A1 3'UTR 0.15 TCGA-3R-A8YX-01 5 32126281 32126281 A G GOLPH3 3'UTR 0.40 TCGA-3R-A8YX-01 5 60062402 60062402 G A ELOVL7 Missense_Mutation p.T131M 0.20 deleterious(0) probably_damaging(1) TCGA-3R-A8YX-01 5 86708462 86708462 C A CCNH Intron 0.12 TCGA-3R-A8YX-01 6 51768492 51768492 T C PKHD1 Missense_Mutation p.N2300S 0.05 deleterious(0) probably_damaging(1) TCGA-3R-A8YX-01 6 57398166 57398166 A C PRIM2 Missense_Mutation p.Q290P 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-3R-A8YX-01 6 64286413 64286413 C T PTP4A1 5'UTR 0.40 TCGA-3R-A8YX-01 6 89320939 89320939 G T RNGTT 3'UTR 0.17 TCGA-3R-A8YX-01 7 105662810 105662810 G T CDHR3 Silent p.A664A 0.27 TCGA-3R-A8YX-01 7 21940719 21940719 C T DNAH11 Silent p.P4473P 0.42 TCGA-3R-A8YX-01 7 5780626 5780626 A G RNF216 Missense_Mutation p.V341A 0.54 tolerated(0.17) benign(0.325) TCGA-3R-A8YX-01 7 99361514 99361514 T G CYP3A4 Missense_Mutation p.K330N 0.07 deleterious(0) possibly_damaging(0.483) TCGA-3R-A8YX-01 8 101052264 101052264 A G RGS22 Silent p.L664L 0.07 TCGA-3R-A8YX-01 8 139143736 139143736 T C FAM135B 3'UTR 0.42 TCGA-3R-A8YX-01 8 144332442 144332442 C A ZFP41 Missense_Mutation p.F143L 0.36 deleterious(0.01) probably_damaging(0.953) TCGA-3R-A8YX-01 9 2104085 2104085 C A SMARCA2 Missense_Mutation p.L1070M 0.66 possibly_damaging(0.665) TCGA-3R-A8YX-01 9 35704730 35704730 C T TLN1 Missense_Mutation p.C1939Y 0.09 tolerated(0.25) probably_damaging(0.991) TCGA-3R-A8YX-01 9 70999430 70999430 G C PGM5 Missense_Mutation p.D181H 0.09 deleterious(0.01) possibly_damaging(0.899) TCGA-3R-A8YX-01 X 125299630 125299630 T C DCAF12L2 Missense_Mutation p.D93G 0.28 tolerated(0.37) benign(0.001) TCGA-3R-A8YX-01 X 153051716 153051716 T A IDH3G Missense_Mutation p.Y344F 0.14 tolerated(0.05) benign(0.032) TCGA-3R-A8YX-01 X 2407814 2407814 C T ZBED1 Missense_Mutation p.R316H 0.08 deleterious(0.02) possibly_damaging(0.77) TCGA-3R-A8YX-01 X 32407760 32407760 C T DMD Missense_Mutation p.R1459Q 1.00 possibly_damaging(0.785) TCGA-DX-A1KU-01 10 12071314 12071314 T A UPF2 Missense_Mutation p.D192V 0.30 deleterious(0) probably_damaging(0.992) TCGA-DX-A1KU-01 10 35500266 35500266 C T CREM Intron 0.10 TCGA-DX-A1KU-01 11 102668809 102668809 A G MMP1 Silent p.P5P 0.11 TCGA-DX-A1KU-01 11 102714172 102714172 C A MMP3 Splice_Site p.X35_splice 0.15 TCGA-DX-A1KU-01 11 4944762 4944762 G A OR51G1 Silent p.L270L 0.17 TCGA-DX-A1KU-01 12 14827569 14827569 G A GUCY2C Silent p.L358L 0.15 TCGA-DX-A1KU-01 12 53818234 53818234 G A AMHR2 Missense_Mutation p.R71Q 0.14 tolerated(0.69) benign(0) TCGA-DX-A1KU-01 12 56563612 56563612 C T SMARCC2 Silent p.G801G 0.60 TCGA-DX-A1KU-01 12 56991317 56991317 C G BAZ2A 3'UTR 0.20 TCGA-DX-A1KU-01 12 56991468 56991468 C G BAZ2A 3'UTR 0.31 TCGA-DX-A1KU-01 12 56991589 56991589 C T BAZ2A 3'UTR 0.24 TCGA-DX-A1KU-01 13 100617076 100617076 T A ZIC5 3'UTR 0.30 TCGA-DX-A1KU-01 14 33836422 33836422 G T NPAS3 Missense_Mutation p.S139I 0.19 deleterious(0.01) benign(0.403) TCGA-DX-A1KU-01 15 27572085 27572085 C T GABRG3 Missense_Mutation p.R134C 0.34 deleterious(0) probably_damaging(0.998) TCGA-DX-A1KU-01 16 21896553 21896553 C G snoU13 3'Flank 0.13 TCGA-DX-A1KU-01 16 3139121 3139121 G A ZSCAN10 Missense_Mutation p.R717C 0.17 deleterious(0) probably_damaging(0.999) TCGA-DX-A1KU-01 16 31927605 31927605 C A ZNF267 Silent p.R679R 0.11 TCGA-DX-A1KU-01 16 335673 335673 C T PDIA2 Silent p.F363F 0.18 TCGA-DX-A1KU-01 16 70863604 70863604 T A HYDIN Missense_Mutation p.T4677S 0.31 possibly_damaging(0.801) TCGA-DX-A1KU-01 17 46059119 46059119 T G CDK5RAP3 3'Flank 0.30 TCGA-DX-A1KU-01 17 6915970 6915970 C T RNASEK Missense_Mutation p.L29F 0.36 deleterious_low_confidence(0.04) benign(0.02) TCGA-DX-A1KU-01 17 9818795 9818795 G A GAS7 3'UTR 0.40 TCGA-DX-A1KU-01 18 54423947 54423947 C G WDR7 Missense_Mutation p.S708C 0.24 deleterious(0.01) benign(0.001) TCGA-DX-A1KU-01 18 70450953 70450953 T A NETO1 Silent p.R276R 0.18 TCGA-DX-A1KU-01 19 40392869 40392869 G A FCGBP Silent p.N2545N 0.17 TCGA-DX-A1KU-01 19 4442306 4442306 A C CHAF1A Missense_Mutation p.D913A 0.09 deleterious(0.03) possibly_damaging(0.677) TCGA-DX-A1KU-01 19 51560014 51560014 G C KLK13 Missense_Mutation p.L222V 0.37 tolerated(0.29) probably_damaging(0.997) TCGA-DX-A1KU-01 19 51675387 51675387 G A CTD-3187F8.14 Intron 0.11 TCGA-DX-A1KU-01 19 56530761 56530761 C A NLRP5 Missense_Mutation p.Q207K 0.28 tolerated(0.5) benign(0.004) TCGA-DX-A1KU-01 19 9091072 9091072 G A MUC16 Missense_Mutation p.S248F 0.14 unknown(0) TCGA-DX-A1KU-01 1 118420646 118420646 A G GDAP2 Silent p.L477L 0.14 TCGA-DX-A1KU-01 1 151679629 151679629 G C CELF3 Missense_Mutation p.P305R 0.09 deleterious(0) benign(0.157) TCGA-DX-A1KU-01 1 158064969 158064969 T A KIRREL 3'UTR 0.05 TCGA-DX-A1KU-01 1 161561102 161561102 A G FCGR2C 5'Flank 0.09 TCGA-DX-A1KU-01 1 211654609 211654609 G A RD3 Missense_Mutation p.A50V 0.45 tolerated(0.07) benign(0.003) TCGA-DX-A1KU-01 1 225586340 225586340 T A LBR 3'Flank 0.09 TCGA-DX-A1KU-01 1 29587188 29587188 T A PTPRU Missense_Mutation p.L306H 0.12 deleterious(0) probably_damaging(0.998) TCGA-DX-A1KU-01 1 32846818 32846818 C T BSDC1 Missense_Mutation p.D154N 0.12 tolerated(0.07) possibly_damaging(0.8) TCGA-DX-A1KU-01 1 51787459 51787459 C G TTC39A Missense_Mutation p.C31S 0.22 tolerated(0.09) probably_damaging(1) TCGA-DX-A1KU-01 1 57185152 57185152 T G C1orf168 3'UTR 0.32 TCGA-DX-A1KU-01 20 14306856 14306856 T C FLRT3 Missense_Mutation p.M433V 0.50 tolerated(0.84) benign(0.001) TCGA-DX-A1KU-01 20 14307796 14307796 G A FLRT3 Silent p.I119I 0.17 TCGA-DX-A1KU-01 21 35209989 35209989 C T ITSN1 Intron 0.25 TCGA-DX-A1KU-01 21 35791536 35791536 C T AP000322.53 Missense_Mutation p.A134T 0.24 tolerated_low_confidence(0.16) benign(0.016) TCGA-DX-A1KU-01 22 26176054 26176054 C T MYO18B Silent p.L700L 0.40 TCGA-DX-A1KU-01 22 28394729 28394729 C T TTC28 Missense_Mutation p.A1640T 0.16 tolerated(0.14) benign(0.398) TCGA-DX-A1KU-01 2 133483253 133483253 C T NCKAP5 Missense_Mutation p.G1887D 0.07 tolerated(0.56) benign(0.136) TCGA-DX-A1KU-01 2 135757570 135757570 A G MAP3K19 Missense_Mutation p.V84A 0.10 deleterious(0) benign(0.342) TCGA-DX-A1KU-01 2 169820724 169820724 C A ABCB11 Missense_Mutation p.D724Y 0.13 deleterious(0) benign(0.001) TCGA-DX-A1KU-01 2 179464295 179464295 C G TTN Missense_Mutation p.R18778T 0.17 TCGA-DX-A1KU-01 2 228883839 228883839 T - SPHKAP Frame_Shift_Del p.E578Rfs*2 0.23 TCGA-DX-A1KU-01 2 28812626 28812626 T A PLB1 Missense_Mutation p.W669R 0.29 deleterious(0) probably_damaging(1) TCGA-DX-A1KU-01 2 74750508 74750508 A C DQX1 Missense_Mutation p.W325G 0.13 tolerated(0.35) benign(0.004) TCGA-DX-A1KU-01 3 164908086 164908086 A T SLITRK3 Missense_Mutation p.L178Q 0.32 deleterious(0) probably_damaging(0.999) TCGA-DX-A1KU-01 3 193361213 193361213 G T OPA1 Missense_Mutation p.D435Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-DX-A1KU-01 5 140256478 140256478 T C PCDHA12 Missense_Mutation p.I474T 0.20 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-DX-A1KU-01 6 123687301 123687301 C A TRDN Missense_Mutation p.G434C 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.808) TCGA-DX-A1KU-01 6 25606292 25606292 C G LRRC16A Missense_Mutation p.P1213R 0.27 deleterious_low_confidence(0.03) benign(0.04) TCGA-DX-A1KU-01 6 28963898 28963898 C T ZNF311 Missense_Mutation p.R294Q 0.11 tolerated(1) benign(0.001) TCGA-DX-A1KU-01 6 96651911 96651911 T A FUT9 Missense_Mutation p.S294T 0.17 tolerated(0.11) possibly_damaging(0.838) TCGA-DX-A1KU-01 6 96660930 96660931 CC AAT FUT9 3'UTR 0.18 TCGA-DX-A1KU-01 7 141730510 141730510 A G MGAM Missense_Mutation p.K475E 0.21 tolerated(0.35) benign(0.086) TCGA-DX-A1KU-01 7 141770841 141770841 T A MGAM Intron 0.09 TCGA-DX-A1KU-01 7 20454678 20454678 T C ITGB8 3'UTR 0.08 TCGA-DX-A1KU-01 8 61743078 61743078 C G CHD7 Missense_Mutation p.N1240K 0.12 probably_damaging(0.997) TCGA-DX-A1KU-01 9 135668027 135668027 G A AK8 Missense_Mutation p.P372L 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A1KU-01 9 32552413 32552413 A G TOPORS Intron 0.14 TCGA-DX-A1KU-01 9 79120876 79120876 G T GCNT1 3'UTR 0.22 TCGA-DX-A1KW-01 10 135271917 135271917 G C SPRN Intron 0.53 TCGA-DX-A1KW-01 10 62021640 62021640 C A ANK3 Missense_Mutation p.A259S 0.21 probably_damaging(0.916) TCGA-DX-A1KW-01 10 62021641 62021641 C A ANK3 Silent p.A258A 0.23 TCGA-DX-A1KW-01 10 92631634 92631634 A G RPP30 5'Flank 0.19 TCGA-DX-A1KW-01 11 110035683 110035683 G A ZC3H12C Missense_Mutation p.D625N 0.47 tolerated(0.33) probably_damaging(0.999) TCGA-DX-A1KW-01 11 56085826 56085826 C T OR8K3 Missense_Mutation p.T15M 0.55 tolerated_low_confidence(1) benign(0.004) TCGA-DX-A1KW-01 12 10228209 10228209 T C CLEC1A Missense_Mutation p.D146G 0.38 deleterious(0.01) benign(0.024) TCGA-DX-A1KW-01 12 112580086 112580086 C T TRAFD1 Silent p.L279L 0.06 TCGA-DX-A1KW-01 12 11420585 11420585 G A PRB3 Missense_Mutation p.R200C 0.11 deleterious(0.01) unknown(0) TCGA-DX-A1KW-01 12 51126229 51126229 C T DIP2B Silent p.S1297S 0.12 TCGA-DX-A1KW-01 12 56511286 56511286 A T RPL41 Missense_Mutation p.K19M 0.70 unknown(0) TCGA-DX-A1KW-01 12 58177770 58177770 G C TSFM Intron 0.15 TCGA-DX-A1KW-01 14 86089224 86089224 A C FLRT2 Missense_Mutation p.K456Q 0.36 deleterious(0.04) possibly_damaging(0.649) TCGA-DX-A1KW-01 15 43815590 43815590 C T MAP1A Missense_Mutation p.A640V 0.41 benign(0.406) TCGA-DX-A1KW-01 15 52356317 52356317 A T MAPK6 Missense_Mutation p.D429V 0.63 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-DX-A1KW-01 16 18586150 18586150 A T RP11-457I16.2 5'Flank 0.39 TCGA-DX-A1KW-01 16 23391983 23391983 C T SCNN1B Missense_Mutation p.A595V 0.19 tolerated(0.29) benign(0.002) TCGA-DX-A1KW-01 16 46766264 46766264 C A MYLK3 Missense_Mutation p.V440F 0.24 deleterious(0.02) benign(0.04) TCGA-DX-A1KW-01 16 88873753 88873753 G A CDT1 Missense_Mutation p.R447Q 0.46 deleterious(0.01) benign(0.058) TCGA-DX-A1KW-01 18 47431107 47431107 G A MYO5B Missense_Mutation p.R836C 0.45 deleterious(0.02) benign(0.029) TCGA-DX-A1KW-01 18 63489324 63489324 C A CDH7 Silent p.I211I 0.26 TCGA-DX-A1KW-01 19 12541977 12541977 A G ZNF443 Missense_Mutation p.Y337H 0.23 deleterious(0.02) benign(0.218) TCGA-DX-A1KW-01 19 17597946 17597946 C T SLC27A1 Intron 0.33 TCGA-DX-A1KW-01 19 2129123 2129123 T C AP3D1 Missense_Mutation p.K258E 0.45 deleterious(0) probably_damaging(0.997) TCGA-DX-A1KW-01 19 55530046 55530046 G C GP6 Nonsense_Mutation p.S233* 0.27 TCGA-DX-A1KW-01 19 55824327 55824327 A C TMEM150B Missense_Mutation p.V201G 0.46 deleterious(0) probably_damaging(0.974) TCGA-DX-A1KW-01 19 8171060 8171060 G A FBN3 Missense_Mutation p.T1582M 0.30 deleterious(0.04) probably_damaging(0.987) TCGA-DX-A1KW-01 1 101007438 101007438 G A GPR88 3'UTR 0.28 TCGA-DX-A1KW-01 1 24078271 24078271 G A TCEB3 Silent p.E418E 0.27 TCGA-DX-A1KW-01 1 247051817 247051817 C T AHCTF1 Missense_Mutation p.G725E 0.17 tolerated(0.05) possibly_damaging(0.699) TCGA-DX-A1KW-01 1 25773365 25773365 G T TMEM57 Missense_Mutation p.V65F 0.22 deleterious(0) possibly_damaging(0.46) TCGA-DX-A1KW-01 21 35195916 35195916 G A ITSN1 Missense_Mutation p.G1048R 0.38 deleterious(0) probably_damaging(0.994) TCGA-DX-A1KW-01 22 42475054 42475054 T A FAM109B 3'UTR 0.31 TCGA-DX-A1KW-01 2 141625271 141625271 G C LRP1B Silent p.T1489T 0.48 TCGA-DX-A1KW-01 2 160721358 160721358 G A LY75-CD302 Missense_Mutation p.R731C 0.11 tolerated(0.06) benign(0.312) TCGA-DX-A1KW-01 2 179641959 179641959 G A TTN Silent p.V1577V 0.31 TCGA-DX-A1KW-01 2 233245025 233245025 C T ALPP Missense_Mutation p.R263C 0.35 deleterious(0.02) possibly_damaging(0.706) TCGA-DX-A1KW-01 3 42265243 42265243 G A TRAK1 3'UTR 0.32 TCGA-DX-A1KW-01 3 97852060 97852060 A T OR5H1 Silent p.I173I 0.30 TCGA-DX-A1KW-01 4 1976385 1976385 C T WHSC1 Intron 0.18 TCGA-DX-A1KW-01 4 1977056 1977056 C T WHSC1 Silent p.L1184L 0.15 TCGA-DX-A1KW-01 4 206529 206529 T A ZNF876P RNA 0.04 TCGA-DX-A1KW-01 4 74303891 74303891 G C AFP Silent p.L46L 0.28 TCGA-DX-A1KW-01 5 169494557 169494557 C T DOCK2 Missense_Mutation p.T1504M 0.28 tolerated(0.12) benign(0.014) TCGA-DX-A1KW-01 5 176026016 176026016 C T GPRIN1 Missense_Mutation p.A274T 0.63 tolerated(0.13) benign(0.039) TCGA-DX-A1KW-01 5 6753031 6753031 C G PAPD7 Missense_Mutation p.P439A 0.19 deleterious_low_confidence(0.01) benign(0.002) TCGA-DX-A1KW-01 6 152485354 152485354 T C SYNE1 Missense_Mutation p.I7912V 0.24 possibly_damaging(0.607) TCGA-DX-A1KW-01 6 26032209 26032209 C G HIST1H3B Missense_Mutation p.R27P 0.18 deleterious_low_confidence(0.01) benign(0.015) TCGA-DX-A1KW-01 6 50812269 50812269 A T TFAP2B 3'UTR 0.21 TCGA-DX-A1KW-01 7 154598776 154598776 C T DPP6 Silent p.S540S 0.19 TCGA-DX-A1KW-01 7 47385934 47385934 G - TNS3 Frame_Shift_Del p.L768Wfs*8 0.32 TCGA-DX-A1KW-01 7 5103562 5103562 A G RBAK Missense_Mutation p.R159G 0.15 tolerated(0.59) benign(0.002) TCGA-DX-A1KW-01 7 97616381 97616381 T G OCM2 Silent p.G94G 0.34 TCGA-DX-A1KW-01 8 145731513 145731513 G A GPT Missense_Mutation p.E319K 0.11 deleterious(0) possibly_damaging(0.633) TCGA-DX-A1KW-01 9 131730948 131730948 A G NUP188 Missense_Mutation p.N250S 0.40 tolerated(0.13) probably_damaging(0.999) TCGA-DX-A1KW-01 X 27766740 27766740 C T DCAF8L2 Silent p.D576D 0.36 TCGA-DX-A1KW-01 X 85769347 85769347 C T DACH2 Missense_Mutation p.T198I 0.79 deleterious(0) benign(0.025) TCGA-DX-A1KX-01 10 103339146 103339146 G A POLL 3'UTR 0.26 TCGA-DX-A1KX-01 10 105209694 105209694 G T CALHM2 Missense_Mutation p.A2E 0.28 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-DX-A1KX-01 10 14950956 14950956 G A DCLRE1C Silent p.S510S 0.11 TCGA-DX-A1KX-01 10 47756669 47756669 G - ANXA8L2 Frame_Shift_Del p.T196Lfs*4 0.15 TCGA-DX-A1KX-01 10 49654635 49654635 T A ARHGAP22 Missense_Mutation p.R648S 0.13 deleterious(0.04) possibly_damaging(0.46) TCGA-DX-A1KX-01 11 125781255 125781255 G T DDX25 Silent p.G224G 0.29 TCGA-DX-A1KX-01 11 1264388 1264388 C T MUC5B Missense_Mutation p.S2093F 0.49 unknown(0) TCGA-DX-A1KX-01 11 1264434 1264434 C T MUC5B Silent p.T2108T 0.51 TCGA-DX-A1KX-01 11 1266627 1266627 C T MUC5B Silent p.T2839T 0.55 TCGA-DX-A1KX-01 11 1266813 1266813 C T MUC5B Silent p.I2901I 0.54 TCGA-DX-A1KX-01 11 1267169 1267169 C T MUC5B Missense_Mutation p.P3020L 0.62 unknown(0) TCGA-DX-A1KX-01 11 1267348 1267348 C T MUC5B Missense_Mutation p.L3080F 0.60 unknown(0) TCGA-DX-A1KX-01 11 32125935 32125935 A T RCN1 Missense_Mutation p.I305L 0.35 deleterious(0.03) possibly_damaging(0.601) TCGA-DX-A1KX-01 11 46419176 46419176 G A AMBRA1 Missense_Mutation p.R1151W 0.24 deleterious_low_confidence(0) benign(0.001) TCGA-DX-A1KX-01 11 56756609 56756609 C G OR5AK2 Missense_Mutation p.T74S 0.29 tolerated(1) benign(0.05) TCGA-DX-A1KX-01 11 6580427 6580427 G A DNHD1 Missense_Mutation p.E3145K 0.15 benign(0.004) TCGA-DX-A1KX-01 11 82879708 82879708 C T PCF11 Silent p.S777S 0.31 TCGA-DX-A1KX-01 11 92086926 92086926 T A FAT3 Missense_Mutation p.S550T 0.12 probably_damaging(0.999) TCGA-DX-A1KX-01 12 25801455 25801455 C T IFLTD1 Missense_Mutation p.G11S 0.24 tolerated_low_confidence(0.7) benign(0.001) TCGA-DX-A1KX-01 12 46325318 46325318 G A SCAF11 Missense_Mutation p.P271L 0.10 deleterious(0) benign(0.167) TCGA-DX-A1KX-01 12 52159892 52159892 C T SCN8A Intron 0.27 TCGA-DX-A1KX-01 12 56355454 56355454 G A PMEL Nonsense_Mutation p.Q47* 0.26 TCGA-DX-A1KX-01 14 23569639 23569639 A G C14orf119 3'UTR 0.60 TCGA-DX-A1KX-01 14 42236163 42236163 C T LRFN5 5'UTR 0.14 TCGA-DX-A1KX-01 14 70634623 70634623 T C SLC8A3 Missense_Mutation p.S173G 0.11 deleterious(0) probably_damaging(1) TCGA-DX-A1KX-01 14 94404161 94404161 A T ASB2 Missense_Mutation p.W552R 0.12 deleterious(0) probably_damaging(0.984) TCGA-DX-A1KX-01 14 94845756 94845756 C - SERPINA1 Intron 0.24 TCGA-DX-A1KX-01 15 27184483 27184483 G A GABRA5 Intron 0.88 TCGA-DX-A1KX-01 15 28234798 28234798 G T OCA2 Silent p.T377T 0.14 TCGA-DX-A1KX-01 15 40328420 40328420 C G SRP14 3'UTR 0.08 TCGA-DX-A1KX-01 15 40328421 40328421 C T SRP14 3'UTR 0.08 TCGA-DX-A1KX-01 15 58357739 58357739 T C ALDH1A2 Missense_Mutation p.Y37C 0.19 deleterious(0.05) possibly_damaging(0.794) TCGA-DX-A1KX-01 15 91430557 91430557 C A FES Missense_Mutation p.L209M 0.19 deleterious(0.04) possibly_damaging(0.841) TCGA-DX-A1KX-01 16 20442633 20442633 A G ACSM5 Missense_Mutation p.N433S 0.68 tolerated(1) benign(0.002) TCGA-DX-A1KX-01 16 23768606 23768606 G T CHP2 Missense_Mutation p.D167Y 0.19 deleterious(0) probably_damaging(0.991) TCGA-DX-A1KX-01 16 3614599 3614599 G A NLRC3 Silent p.R160R 0.19 TCGA-DX-A1KX-01 16 53525432 53525432 G A AKTIP 3'UTR 0.22 TCGA-DX-A1KX-01 16 7761871 7761871 G T RBFOX1 3'UTR 0.20 TCGA-DX-A1KX-01 17 18967436 18967436 G T SNORD3B-2 RNA 0.40 TCGA-DX-A1KX-01 17 19451359 19451359 T A SLC47A1 Missense_Mutation p.L123Q 0.16 deleterious(0) probably_damaging(0.998) TCGA-DX-A1KX-01 17 27889778 27889778 C T ABHD15 Nonsense_Mutation p.W403* 0.21 TCGA-DX-A1KX-01 17 32483156 32483156 G A ASIC2 Silent p.S132S 0.24 TCGA-DX-A1KX-01 17 41477731 41477731 C T ARL4D 3'UTR 0.58 TCGA-DX-A1KX-01 17 78444593 78444593 C A NPTX1 3'UTR 0.14 TCGA-DX-A1KX-01 18 29205462 29205462 G T B4GALT6 3'UTR 0.12 TCGA-DX-A1KX-01 19 39100635 39100635 G A MAP4K1 Nonsense_Mutation p.R281* 0.49 TCGA-DX-A1KX-01 19 42510901 42510901 C T GRIK5 Missense_Mutation p.V645M 0.14 deleterious(0) probably_damaging(1) TCGA-DX-A1KX-01 19 49983823 49983823 C A FLT3LG Silent p.P225P 0.31 TCGA-DX-A1KX-01 19 51958862 51958862 G C SIGLEC8 Missense_Mutation p.S287R 0.12 deleterious(0) probably_damaging(0.997) TCGA-DX-A1KX-01 19 56466706 56466706 G A NLRP8 Missense_Mutation p.V428I 0.22 tolerated(0.28) benign(0.073) TCGA-DX-A1KX-01 19 6495616 6495616 G A TUBB4A Silent p.N298N 0.36 TCGA-DX-A1KX-01 19 7570241 7570241 C A C19orf45 Missense_Mutation p.H272N 0.09 deleterious(0.01) probably_damaging(0.963) TCGA-DX-A1KX-01 19 7676960 7676960 G A CAMSAP3 Silent p.S554S 0.11 TCGA-DX-A1KX-01 1 114438086 114438086 C A AP4B1 Missense_Mutation p.E607D 0.10 tolerated(0.43) benign(0.097) TCGA-DX-A1KX-01 1 146658726 146658726 A G FMO5 Missense_Mutation p.L452P 0.22 deleterious(0) probably_damaging(0.988) TCGA-DX-A1KX-01 1 172413160 172413160 C T PIGC 5'UTR 0.23 TCGA-DX-A1KX-01 1 210010164 210010164 C G DIEXF Missense_Mutation p.L224V 0.67 tolerated(0.11) benign(0.005) TCGA-DX-A1KX-01 1 221874839 221874839 G T DUSP10 3'UTR 0.18 TCGA-DX-A1KX-01 1 41467863 41467863 C T CTPS1 Nonsense_Mutation p.R376* 0.17 TCGA-DX-A1KX-01 20 17462530 17462530 G A PCSK2 Missense_Mutation p.A578T 0.21 tolerated(0.7) benign(0.001) TCGA-DX-A1KX-01 20 33590777 33590777 T A TRPC4AP 3'UTR 0.13 TCGA-DX-A1KX-01 20 33590778 33590778 C A TRPC4AP 3'UTR 0.13 TCGA-DX-A1KX-01 20 58467461 58467461 G A SYCP2 Missense_Mutation p.L650F 0.09 tolerated(0.75) benign(0.006) TCGA-DX-A1KX-01 20 62859419 62859419 C A MYT1 Intron 0.10 TCGA-DX-A1KX-01 20 62859435 62859435 C A MYT1 Intron 0.13 TCGA-DX-A1KX-01 20 9498740 9498740 G A LAMP5 Missense_Mutation p.G177R 0.82 deleterious(0) probably_damaging(0.988) TCGA-DX-A1KX-01 21 37518520 37518520 G T CBR3 Nonsense_Mutation p.E182* 0.20 TCGA-DX-A1KX-01 21 47855814 47855814 C T PCNT Intron 0.20 TCGA-DX-A1KX-01 22 21538248 21538248 C T FAM230B RNA 0.08 TCGA-DX-A1KX-01 22 41513219 41513219 C T EP300 Silent p.H41H 0.16 TCGA-DX-A1KX-01 22 45258460 45258460 C A PRR5-ARHGAP8 Silent p.A639A 0.21 TCGA-DX-A1KX-01 2 121745876 121745876 G A GLI2 Missense_Mutation p.V796M 0.73 tolerated(0.23) benign(0.397) TCGA-DX-A1KX-01 2 158977927 158977927 C T UPP2 Missense_Mutation p.A211V 0.25 deleterious(0.04) benign(0.004) TCGA-DX-A1KX-01 2 166221698 166221698 G T SCN2A Nonsense_Mutation p.G1149* 0.68 TCGA-DX-A1KX-01 2 170134297 170134297 C T LRP2 Missense_Mutation p.R577Q 0.52 probably_damaging(0.982) TCGA-DX-A1KX-01 2 217538707 217538749 CAGGCTCTAATCCCCCACCTGATGGCTGGCAGCAAAGAGCCAA - IGFBP5 3'UTR 0.62 TCGA-DX-A1KX-01 2 223169888 223169888 T C CCDC140 3'UTR 0.64 TCGA-DX-A1KX-01 2 231775043 231775043 C T GPR55 Missense_Mutation p.R212Q 0.10 tolerated(0.68) benign(0.025) TCGA-DX-A1KX-01 2 234229408 234229408 C A SAG Missense_Mutation p.T105K 0.13 deleterious(0) possibly_damaging(0.702) TCGA-DX-A1KX-01 2 238494745 238494745 C T RAB17 Missense_Mutation p.R18H 0.31 tolerated(0.54) benign(0.001) TCGA-DX-A1KX-01 2 64863598 64863598 G C SERTAD2 Silent p.L136L 0.08 TCGA-DX-A1KX-01 3 133494415 133494415 G A TF Missense_Mutation p.R609Q 0.29 deleterious(0.01) probably_damaging(1) TCGA-DX-A1KX-01 4 100349113 100349113 G T ADH7 Silent p.T147T 0.17 TCGA-DX-A1KX-01 4 169196597 169196597 G T DDX60 Missense_Mutation p.P735T 0.15 deleterious(0.01) possibly_damaging(0.87) TCGA-DX-A1KX-01 4 39456508 39456508 C T RPL9 Missense_Mutation p.D150N 0.68 tolerated(0.05) possibly_damaging(0.704) TCGA-DX-A1KX-01 4 629751 629751 G A PDE6B Missense_Mutation p.R235H 0.24 deleterious(0) probably_damaging(0.931) TCGA-DX-A1KX-01 5 135692425 135692425 C T TRPC7 Silent p.S217S 0.12 TCGA-DX-A1KX-01 5 140481898 140481898 C T PCDHB3 Silent p.N555N 0.13 TCGA-DX-A1KX-01 5 141036319 141036319 T - ARAP3 Frame_Shift_Del p.V1208Sfs*79 0.22 TCGA-DX-A1KX-01 5 180582588 180582588 G A OR2V2 Missense_Mutation p.V216M 0.26 tolerated(0.15) benign(0.406) TCGA-DX-A1KX-01 5 23523455 23523455 C G PRDM9 Missense_Mutation p.A313G 0.16 tolerated(0.08) benign(0.003) TCGA-DX-A1KX-01 5 40765100 40765100 C T PRKAA1 Silent p.A369A 0.33 TCGA-DX-A1KX-01 5 7789806 7789806 G A ADCY2 Missense_Mutation p.E841K 0.11 deleterious(0) probably_damaging(0.99) TCGA-DX-A1KX-01 5 81549217 81549217 G A ATG10 Silent p.T212T 0.16 TCGA-DX-A1KX-01 5 90077371 90077371 G C GPR98 Missense_Mutation p.D4403H 0.10 probably_damaging(0.988) TCGA-DX-A1KX-01 6 123100984 123100984 G T FABP7 Missense_Mutation p.Q15H 0.13 deleterious(0.02) benign(0.002) TCGA-DX-A1KX-01 6 123332153 123332153 G A CLVS2 Missense_Mutation p.R138H 0.48 deleterious(0.04) possibly_damaging(0.634) TCGA-DX-A1KX-01 6 123580784 123580784 C T TRDN Missense_Mutation p.E619K 0.11 tolerated_low_confidence(0.11) probably_damaging(0.978) TCGA-DX-A1KX-01 6 41708334 41708334 C G PGC Missense_Mutation p.S221T 0.71 tolerated(0.61) benign(0.006) TCGA-DX-A1KX-01 6 50683222 50683222 C G TFAP2D Missense_Mutation p.L145V 0.15 tolerated(0.42) benign(0.011) TCGA-DX-A1KX-01 6 70500426 70500426 G A LMBRD1 Intron 0.11 TCGA-DX-A1KX-01 6 9933033 9933033 A G OFCC1 Missense_Mutation p.F76L 0.15 tolerated(1) benign(0.006) TCGA-DX-A1KX-01 7 13934805 13934805 G A ETV1 3'UTR 0.17 TCGA-DX-A1KX-01 7 149506494 149506494 T A SSPO RNA 0.27 TCGA-DX-A1KX-01 7 149521663 149521663 T A SSPO RNA 0.37 TCGA-DX-A1KX-01 7 20689758 20689758 G A ABCB5 Silent p.P440P 0.12 TCGA-DX-A1KX-01 8 143958162 143958162 A T CYP11B1 Silent p.S245S 0.07 TCGA-DX-A1KX-01 9 108456972 108456972 G A TMEM38B Missense_Mutation p.A11T 0.34 tolerated(0.54) benign(0.001) TCGA-DX-A1KX-01 9 134404363 134404363 C A UCK1 Missense_Mutation p.V196L 0.37 deleterious(0) probably_damaging(0.999) TCGA-DX-A1KX-01 9 139650488 139650488 G A LCN8 Intron 0.45 TCGA-DX-A1KX-01 9 140705942 140705942 G A EHMT1 Silent p.A914A 0.16 TCGA-DX-A1KX-01 9 35403170 35403170 G T UNC13B Missense_Mutation p.G1415V 0.55 deleterious(0.02) probably_damaging(0.984) TCGA-DX-A1KX-01 9 35818940 35818940 T C FAM221B Missense_Mutation p.H373R 0.09 deleterious(0) probably_damaging(0.999) TCGA-DX-A1KX-01 9 37784919 37784919 G A EXOSC3 Silent p.D41D 0.14 TCGA-DX-A1KX-01 X 105450724 105450724 G T MUM1L1 Missense_Mutation p.K433N 0.46 tolerated(0.17) benign(0.349) TCGA-DX-A1KX-01 X 148048590 148048590 A G AFF2 Missense_Mutation p.K1062E 0.15 deleterious(0) probably_damaging(0.963) TCGA-DX-A1KX-01 X 154274786 154274786 G A FUNDC2 Missense_Mutation p.C96Y 0.06 deleterious(0) probably_damaging(0.992) TCGA-DX-A1L0-01 10 115964595 115964595 G A TDRD1 Missense_Mutation p.D414N 0.43 tolerated(0.1) benign(0.002) TCGA-DX-A1L0-01 10 118236296 118236296 A T PNLIPRP3 Missense_Mutation p.E435D 0.09 tolerated(0.08) benign(0.014) TCGA-DX-A1L0-01 10 129202586 129202586 C G DOCK1 Intron 0.33 TCGA-DX-A1L0-01 10 134906510 134906510 G A GPR123 Intron 0.08 TCGA-DX-A1L0-01 10 16870803 16870803 C A CUBN Splice_Site p.X3588_splice 0.58 TCGA-DX-A1L0-01 10 76797662 76797662 G A DUPD1 Nonsense_Mutation p.Q199* 0.29 TCGA-DX-A1L0-01 11 114550437 114550437 A T NXPE2 Missense_Mutation p.I29F 0.52 tolerated(0.06) benign(0.006) TCGA-DX-A1L0-01 11 125453833 125453833 G C EI24 3'UTR 0.28 TCGA-DX-A1L0-01 11 55135991 55135991 C T OR4A15 Missense_Mutation p.P211L 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DX-A1L0-01 11 6953570 6953570 G C ZNF215 Missense_Mutation p.E23Q 0.12 deleterious(0.03) benign(0.356) TCGA-DX-A1L0-01 11 842524 842545 CAGACTGCCCGGCCCGGCCCGG - POLR2L 5'UTR 0.67 TCGA-DX-A1L0-01 12 118112108 118112108 C T KSR2 Intron 0.35 TCGA-DX-A1L0-01 12 120565555 120565555 G A GCN1L1 3'UTR 0.16 TCGA-DX-A1L0-01 12 132588667 132588667 C T EP400NL Silent p.S34S 0.12 TCGA-DX-A1L0-01 12 26780989 26780989 G A ITPR2 Missense_Mutation p.S1014F 0.62 deleterious(0.04) benign(0.139) TCGA-DX-A1L0-01 12 26784883 26784883 G T ITPR2 Silent p.I950I 0.60 TCGA-DX-A1L0-01 12 26784934 26784934 G T ITPR2 Silent p.L933L 0.63 TCGA-DX-A1L0-01 12 27955707 27955707 G A KLHL42 3'UTR 0.56 TCGA-DX-A1L0-01 12 28122773 28122773 C G PTHLH Intron 0.05 TCGA-DX-A1L0-01 12 45567096 45567096 C G PLEKHA8P1 RNA 0.26 TCGA-DX-A1L0-01 12 49944060 49944060 C G KCNH3 Silent p.V622V 0.44 TCGA-DX-A1L0-01 12 55615732 55615732 A T OR10A7 Missense_Mutation p.K308N 0.25 tolerated(0.16) benign(0.001) TCGA-DX-A1L0-01 12 66856716 66856716 C A GRIP1 Missense_Mutation p.G344W 0.21 deleterious(0.01) probably_damaging(0.917) TCGA-DX-A1L0-01 12 66935629 66935629 C A GRIP1 Missense_Mutation p.V80L 0.08 deleterious(0) possibly_damaging(0.676) TCGA-DX-A1L0-01 12 68052027 68052027 A G DYRK2 Missense_Mutation p.D447G 0.30 deleterious(0.02) benign(0.019) TCGA-DX-A1L0-01 12 70003875 70003875 G A LRRC10 Silent p.D248D 0.04 TCGA-DX-A1L0-01 13 37006164 37006164 G A CCNA1 5'Flank 0.58 TCGA-DX-A1L0-01 13 84453022 84453022 C T SLITRK1 3'UTR 0.50 TCGA-DX-A1L0-01 13 84454233 84454233 C T SLITRK1 Missense_Mutation p.M470I 0.25 deleterious(0.03) benign(0.052) TCGA-DX-A1L0-01 14 100402591 100402591 C G EML1 Missense_Mutation p.S691C 0.19 deleterious(0.02) benign(0.037) TCGA-DX-A1L0-01 14 100402664 100402664 C A EML1 Silent p.I715I 0.12 TCGA-DX-A1L0-01 15 100331972 100331972 G A AC090825.1 5'Flank 0.25 TCGA-DX-A1L0-01 15 102211786 102211786 C G TARSL2 Missense_Mutation p.D624H 0.18 deleterious(0) probably_damaging(0.983) TCGA-DX-A1L0-01 15 31664456 31664456 G A KLF13 Missense_Mutation p.R274H 0.60 deleterious_low_confidence(0) unknown(0) TCGA-DX-A1L0-01 15 40907552 40907552 G C CASC5 Missense_Mutation p.E126Q 0.23 deleterious(0.01) possibly_damaging(0.9) TCGA-DX-A1L0-01 15 63559304 63559304 T C RAB8B 3'UTR 0.25 TCGA-DX-A1L0-01 16 19126010 19126010 C A ITPRIPL2 Missense_Mutation p.P76H 0.33 deleterious(0.03) probably_damaging(0.99) TCGA-DX-A1L0-01 16 21073855 21073855 G A DNAH3 Missense_Mutation p.S1223L 0.90 deleterious(0) possibly_damaging(0.803) TCGA-DX-A1L0-01 16 24909327 24909327 C A SLC5A11 Missense_Mutation p.N301K 0.26 deleterious(0) possibly_damaging(0.904) TCGA-DX-A1L0-01 16 2692290 2692290 C G CTD-3126B10.4 3'Flank 0.07 TCGA-DX-A1L0-01 16 30768548 30768548 C T PHKG2 3'UTR 0.16 TCGA-DX-A1L0-01 16 4559676 4559676 G C HMOX2 Silent p.V290V 0.82 TCGA-DX-A1L0-01 16 71681155 71681155 A G PHLPP2 3'UTR 0.18 TCGA-DX-A1L0-01 16 89590469 89590469 C A SPG7 Silent p.T144T 0.21 TCGA-DX-A1L0-01 17 32963185 32963185 G A TMEM132E Missense_Mutation p.A623T 0.43 tolerated(1) benign(0.038) TCGA-DX-A1L0-01 17 46685168 46685168 T C HOXB7 3'UTR 0.38 TCGA-DX-A1L0-01 17 46799123 46799123 G A PRAC1 3'UTR 0.28 TCGA-DX-A1L0-01 17 56357978 56357978 C T MPO Missense_Mutation p.G48S 0.25 tolerated(0.7) benign(0.057) TCGA-DX-A1L0-01 17 56499414 56499414 A G HSF5 3'UTR 0.55 TCGA-DX-A1L0-01 18 14530533 14530533 C G POTEC Missense_Mutation p.D359H 0.31 deleterious(0) probably_damaging(0.989) TCGA-DX-A1L0-01 18 70205471 70205471 G C CBLN2 Silent p.G205G 0.46 TCGA-DX-A1L0-01 18 76967012 76967012 G C ATP9B Missense_Mutation p.G344R 0.23 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L0-01 18 77132857 77132857 C T ATP9B Silent p.I1015I 0.26 TCGA-DX-A1L0-01 19 17086945 17086945 G A CPAMD8 Missense_Mutation p.S639L 0.32 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L0-01 19 4338770 4338770 G A STAP2 5'UTR 0.31 TCGA-DX-A1L0-01 19 47730266 47730266 G C BBC3 Intron 0.15 TCGA-DX-A1L0-01 19 55331443 55331443 G A KIR3DL1 Missense_Mutation p.D211N 0.41 tolerated(0.06) benign(0.142) TCGA-DX-A1L0-01 19 7963872 7963872 G A LRRC8E Silent p.K155K 0.30 TCGA-DX-A1L0-01 19 8601180 8601180 A T MYO1F Missense_Mutation p.Y667N 0.42 deleterious(0) probably_damaging(0.918) TCGA-DX-A1L0-01 1 12941810 12941810 G T PRAMEF4 Missense_Mutation p.S247Y 0.31 tolerated(0.11) possibly_damaging(0.767) TCGA-DX-A1L0-01 1 156627954 156627954 C G BCAN Missense_Mutation p.S776R 0.33 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L0-01 1 157504326 157504326 G C FCRL5 Intron 0.23 TCGA-DX-A1L0-01 1 160124877 160124877 G A ATP1A4 Missense_Mutation p.G84R 0.19 deleterious(0) probably_damaging(1) TCGA-DX-A1L0-01 1 160125005 160125005 G C ATP1A4 Missense_Mutation p.Q126H 0.13 tolerated(0.05) benign(0.002) TCGA-DX-A1L0-01 1 160970058 160970058 C G F11R Missense_Mutation p.D157H 0.91 deleterious(0.03) probably_damaging(0.95) TCGA-DX-A1L0-01 1 160970420 160970420 C A F11R Splice_Site p.X130_splice 0.68 TCGA-DX-A1L0-01 1 161976156 161976156 G C OLFML2B Missense_Mutation p.I218M 0.24 tolerated(0.58) benign(0.007) TCGA-DX-A1L0-01 1 169366506 169366506 C G CCDC181 Missense_Mutation p.G446R 0.21 tolerated(0.56) benign(0.117) TCGA-DX-A1L0-01 1 173950028 173950028 T A RC3H1 Missense_Mutation p.L296F 0.07 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L0-01 1 185902757 185902757 C T HMCN1 Silent p.I543I 0.19 TCGA-DX-A1L0-01 1 212209053 212209053 C T DTL 5'UTR 0.38 TCGA-DX-A1L0-01 1 28282224 28282224 G C SMPDL3B Silent p.G240G 0.24 TCGA-DX-A1L0-01 1 77555220 77555220 T A PIGK 3'UTR 0.30 TCGA-DX-A1L0-01 20 31690812 31690812 A T BPIFB4 Missense_Mutation p.N558Y 0.19 deleterious(0.01) probably_damaging(0.926) TCGA-DX-A1L0-01 20 44879759 44879759 G A CDH22 Missense_Mutation p.R59C 0.70 deleterious(0) probably_damaging(0.993) TCGA-DX-A1L0-01 20 57603782 57603782 T C ATP5E 3'UTR 0.16 TCGA-DX-A1L0-01 20 60774287 60774287 A G MTG2 Missense_Mutation p.H267R 0.29 tolerated(0.12) benign(0.029) TCGA-DX-A1L0-01 20 8864882 8864882 A T PLCB1 3'UTR 0.37 TCGA-DX-A1L0-01 22 21476019 21476020 - C POM121L7 3'Flank 0.21 TCGA-DX-A1L0-01 22 41573178 41573178 A G EP300 Silent p.R1821R 0.15 TCGA-DX-A1L0-01 2 100209926 100209926 C G AFF3 Missense_Mutation p.D758H 0.24 deleterious(0) possibly_damaging(0.601) TCGA-DX-A1L0-01 2 102792072 102792072 T C IL1R1 Missense_Mutation p.F424L 0.31 deleterious(0) probably_damaging(1) TCGA-DX-A1L0-01 2 138378229 138378229 C T THSD7B Silent p.C1247C 0.40 TCGA-DX-A1L0-01 2 15769733 15769733 A C DDX1 Missense_Mutation p.Y628S 0.24 deleterious(0) probably_damaging(0.934) TCGA-DX-A1L0-01 2 158178133 158178133 C A ERMN Missense_Mutation p.D182Y 0.34 deleterious(0.02) probably_damaging(0.957) TCGA-DX-A1L0-01 2 231678816 231678816 G T CAB39 Missense_Mutation p.R227I 0.16 deleterious(0) probably_damaging(0.989) TCGA-DX-A1L0-01 2 242046865 242046865 G A PASK Silent p.R1246R 0.70 TCGA-DX-A1L0-01 2 28824143 28824143 A G PLB1 Missense_Mutation p.K851E 0.18 deleterious(0) probably_damaging(1) TCGA-DX-A1L0-01 2 61020798 61020798 G C PAPOLG Missense_Mutation p.K572N 0.14 tolerated(0.5) benign(0.008) TCGA-DX-A1L0-01 2 85657484 85657484 C T SH2D6 5'Flank 0.27 TCGA-DX-A1L0-01 3 134884887 134884887 T G EPHB1 Missense_Mutation p.S555A 0.43 tolerated(0.6) benign(0.002) TCGA-DX-A1L0-01 3 1415693 1415693 C T CNTN6 Silent p.A677A 0.38 TCGA-DX-A1L0-01 3 15512079 15512079 T C COLQ Silent p.R227R 0.16 TCGA-DX-A1L0-01 3 186256495 186256495 A G CRYGS Missense_Mutation p.I176T 0.35 tolerated(0.06) possibly_damaging(0.484) TCGA-DX-A1L0-01 3 187416376 187416376 G C RTP2 Missense_Mutation p.F196L 0.47 tolerated(0.35) possibly_damaging(0.695) TCGA-DX-A1L0-01 3 46874437 46874437 G A PRSS42 Nonsense_Mutation p.R211* 0.39 TCGA-DX-A1L0-01 3 93605266 93605266 G T PROS1 Missense_Mutation p.L413I 0.33 deleterious(0) probably_damaging(1) TCGA-DX-A1L0-01 4 16014945 16014945 T C PROM1 Missense_Mutation p.N365S 0.24 deleterious(0.03) possibly_damaging(0.734) TCGA-DX-A1L0-01 4 69796903 69796903 A T UGT2A3 Missense_Mutation p.Y352N 0.07 deleterious(0) probably_damaging(0.99) TCGA-DX-A1L0-01 4 94750585 94750585 C T ATOH1 Missense_Mutation p.R170C 0.17 deleterious(0.02) possibly_damaging(0.508) TCGA-DX-A1L0-01 5 13727719 13727719 T - DNAH5 Frame_Shift_Del p.N3977Tfs*54 0.50 TCGA-DX-A1L0-01 5 13727742 13727742 C T DNAH5 Nonsense_Mutation p.W3969* 0.56 TCGA-DX-A1L0-01 5 13727766 13727766 C A DNAH5 Splice_Site p.X3962_splice 0.58 TCGA-DX-A1L0-01 5 170305184 170305184 C G RANBP17 Silent p.L34L 0.11 TCGA-DX-A1L0-01 5 176492738 176492738 G A ZNF346 3'UTR 0.40 TCGA-DX-A1L0-01 5 180048638 180048638 G A FLT4 Missense_Mutation p.R642C 0.15 deleterious(0) possibly_damaging(0.69) TCGA-DX-A1L0-01 5 35066042 35066042 G T PRLR Missense_Mutation p.P340T 0.29 tolerated(0.28) benign(0.164) TCGA-DX-A1L0-01 5 75621242 75621242 G A SV2C Missense_Mutation p.G685E 0.17 deleterious(0) probably_damaging(1) TCGA-DX-A1L0-01 6 29323624 29323624 C T OR5V1 Missense_Mutation p.A117T 0.80 tolerated(0.08) benign(0.045) TCGA-DX-A1L0-01 7 110762970 110762970 A G LRRN3 Missense_Mutation p.M48V 0.31 tolerated(0.18) benign(0.038) TCGA-DX-A1L0-01 7 134215401 134215401 C G AKR1B10 Missense_Mutation p.L25V 0.38 deleterious(0.03) benign(0) TCGA-DX-A1L0-01 7 36429488 36429488 C T ANLN 5'UTR 0.16 TCGA-DX-A1L0-01 8 107718618 107718618 A T OXR1 Missense_Mutation p.D291V 0.29 deleterious(0.02) benign(0.13) TCGA-DX-A1L0-01 8 130760915 130760915 G A GSDMC Silent p.L453L 0.56 TCGA-DX-A1L0-01 8 144464866 144464866 C A RHPN1 3'UTR 0.24 TCGA-DX-A1L0-01 8 27630094 27630094 A C CCDC25 5'UTR 0.74 TCGA-DX-A1L0-01 8 3245123 3245123 C G CSMD1 Missense_Mutation p.R892T 0.20 benign(0.131) TCGA-DX-A1L0-01 8 48733396 48733396 G A PRKDC Nonsense_Mutation p.Q3073* 0.23 TCGA-DX-A1L0-01 8 55541922 55541922 C G RP1 Nonsense_Mutation p.S1827* 0.23 TCGA-DX-A1L0-01 9 100689154 100689154 T C HEMGN 3'UTR 0.27 TCGA-DX-A1L0-01 9 108123581 108123581 C T SLC44A1 Silent p.L290L 0.21 TCGA-DX-A1L0-01 9 134349905 134349905 T G PRRC2B Missense_Mutation p.F797V 0.35 deleterious(0.01) benign(0.097) TCGA-DX-A1L0-01 9 138441743 138441743 C T OBP2A 3'UTR 0.21 TCGA-DX-A1L0-01 9 396912 396912 C A DOCK8 Missense_Mutation p.A1033D 0.40 tolerated(0.12) benign(0.185) TCGA-DX-A1L0-01 X 107979563 107979563 G A IRS4 Silent p.C4C 0.60 TCGA-DX-A1L0-01 X 37984567 37984567 G T SYTL5 Missense_Mutation p.D642Y 0.24 deleterious(0.02) possibly_damaging(0.908) TCGA-DX-A1L0-01 X 69479070 69479070 C T P2RY4 Silent p.L135L 0.39 TCGA-DX-A1L2-01 10 1246213 1246213 T A ADARB2 Intron 0.32 TCGA-DX-A1L2-01 10 47087186 47087186 G A NPY4R Missense_Mutation p.V135M 0.15 deleterious(0) probably_damaging(0.971) TCGA-DX-A1L2-01 10 89127109 89127109 C G NUTM2D Missense_Mutation p.P552A 0.24 tolerated_low_confidence(0.1) benign(0.024) TCGA-DX-A1L2-01 11 113560630 113560630 C T TMPRSS5 Missense_Mutation p.G406R 0.39 deleterious(0.05) possibly_damaging(0.832) TCGA-DX-A1L2-01 11 121028837 121028837 C A TECTA Missense_Mutation p.F1531L 0.31 tolerated(0.25) probably_damaging(0.969) TCGA-DX-A1L2-01 11 16810669 16810669 G A PLEKHA7 Missense_Mutation p.R1111W 0.14 deleterious_low_confidence(0) possibly_damaging(0.556) TCGA-DX-A1L2-01 11 46407064 46407064 C G CHRM4 Missense_Mutation p.Q348H 0.46 tolerated(0.07) possibly_damaging(0.796) TCGA-DX-A1L2-01 11 93529663 93529663 A T MED17 Missense_Mutation p.H367L 0.23 deleterious(0) probably_damaging(0.954) TCGA-DX-A1L2-01 12 3678670 3678670 C A PRMT8 Silent p.R218R 0.24 TCGA-DX-A1L2-01 12 57969035 57969035 T C KIF5A Missense_Mutation p.C629R 0.41 deleterious(0.01) possibly_damaging(0.862) TCGA-DX-A1L2-01 12 70988329 70988329 C T PTPRB Silent p.L478L 0.17 TCGA-DX-A1L2-01 12 7249368 7249368 G A C1RL Silent p.P361P 0.24 TCGA-DX-A1L2-01 12 92818421 92818421 A T CLLU1 5'UTR 0.35 TCGA-DX-A1L2-01 13 113803498 113803498 G A F10 Silent p.K378K 0.43 TCGA-DX-A1L2-01 13 19751171 19751171 A T TUBA3C Missense_Mutation p.L318M 0.18 tolerated_low_confidence(0.19) probably_damaging(0.953) TCGA-DX-A1L2-01 13 32520168 32520168 T G EEF1DP3 5'Flank 0.36 TCGA-DX-A1L2-01 14 101491981 101491981 C T MIR1197 RNA 0.39 TCGA-DX-A1L2-01 14 104195491 104195491 G A ZFYVE21 Silent p.Q166Q 0.17 TCGA-DX-A1L2-01 14 104199675 104199675 G C ZFYVE21 3'UTR 0.08 TCGA-DX-A1L2-01 14 104206896 104206896 G C PPP1R13B Silent p.T619T 0.10 TCGA-DX-A1L2-01 14 105177455 105177455 A C INF2 Missense_Mutation p.T784P 0.46 deleterious(0) unknown(0) TCGA-DX-A1L2-01 14 105268531 105268531 G T ZBTB42 Missense_Mutation p.A333S 0.12 deleterious(0.01) benign(0.107) TCGA-DX-A1L2-01 14 29237832 29237832 G T FOXG1 Silent p.S449S 0.17 TCGA-DX-A1L2-01 14 77697934 77697934 C T TMEM63C Silent p.D118D 0.18 TCGA-DX-A1L2-01 15 22382584 22382584 A T OR4N4 Missense_Mutation p.I38F 0.08 deleterious(0) possibly_damaging(0.824) TCGA-DX-A1L2-01 15 41988903 41988903 A T MGA Silent p.I565I 0.20 TCGA-DX-A1L2-01 15 42983936 42983936 C A STARD9 Nonsense_Mutation p.S3387* 0.09 TCGA-DX-A1L2-01 15 55919246 55919246 G T PRTG Missense_Mutation p.L963I 0.46 tolerated(0.29) benign(0.036) TCGA-DX-A1L2-01 15 69018978 69018978 T C CORO2B 3'UTR 0.19 TCGA-DX-A1L2-01 16 258115 258115 C T LUC7L Missense_Mutation p.E110K 0.33 tolerated(0.26) probably_damaging(0.986) TCGA-DX-A1L2-01 16 29819450 29819450 C T MAZ Intron 0.34 TCGA-DX-A1L2-01 16 67915420 67915420 G T EDC4 Missense_Mutation p.R937L 0.21 deleterious(0.01) benign(0.003) TCGA-DX-A1L2-01 16 83829708 83829708 T C CDH13 3'Flank 0.31 TCGA-DX-A1L2-01 17 10346789 10346789 T C MYH4 Missense_Mutation p.E1908G 0.22 deleterious(0.03) benign(0.042) TCGA-DX-A1L2-01 17 16285594 16285594 C T UBB Nonsense_Mutation p.Q125* 0.27 TCGA-DX-A1L2-01 17 17250385 17250385 T G NT5M 3'UTR 0.05 TCGA-DX-A1L2-01 17 18653126 18653126 C T FBXW10 Silent p.P254P 0.18 TCGA-DX-A1L2-01 17 19235294 19235294 G A EPN2 Missense_Mutation p.G514S 0.06 deleterious(0) probably_damaging(0.95) TCGA-DX-A1L2-01 17 35902452 35902452 T C SYNRG Missense_Mutation p.T942A 0.15 tolerated_low_confidence(0.17) benign(0.002) TCGA-DX-A1L2-01 17 38350185 38350185 A T RAPGEFL1 3'UTR 0.19 TCGA-DX-A1L2-01 17 4027291 4027291 A C ZZEF1 Missense_Mutation p.L137V 0.12 deleterious(0) probably_damaging(0.998) TCGA-DX-A1L2-01 17 40764110 40764110 G C TUBG1 Missense_Mutation p.E116D 0.14 tolerated(0.32) benign(0.016) TCGA-DX-A1L2-01 17 42926715 42926715 G A HIGD1B Missense_Mutation p.R65Q 0.18 deleterious(0.01) probably_damaging(1) TCGA-DX-A1L2-01 17 45821866 45821866 G T TBX21 Missense_Mutation p.D316Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L2-01 17 46607840 46607840 G C HOXB1 Missense_Mutation p.P143A 0.37 tolerated(0.57) benign(0.046) TCGA-DX-A1L2-01 17 47128208 47128208 G T IGF2BP1 3'UTR 0.14 TCGA-DX-A1L2-01 17 56573691 56573691 T C MTMR4 Silent p.R604R 0.08 TCGA-DX-A1L2-01 17 59477918 59477918 C T TBX2 Silent p.I127I 0.10 TCGA-DX-A1L2-01 17 60779059 60779059 C A MARCH10 3'UTR 0.06 TCGA-DX-A1L2-01 17 60779093 60779093 C G MARCH10 Missense_Mutation p.G800R 0.05 deleterious(0.01) benign(0.145) TCGA-DX-A1L2-01 17 62025311 62025311 G A SCN4A Missense_Mutation p.A1086V 0.13 deleterious(0.01) probably_damaging(0.994) TCGA-DX-A1L2-01 17 62892261 62892261 T A LRRC37A3 Missense_Mutation p.E372V 0.10 deleterious(0.03) benign(0.413) TCGA-DX-A1L2-01 17 72435889 72435889 C G GPRC5C Missense_Mutation p.Q37E 0.14 deleterious_low_confidence(0.05) benign(0.017) TCGA-DX-A1L2-01 17 72436058 72436058 C T GPRC5C Missense_Mutation p.A93V 0.10 tolerated(0.48) benign(0.12) TCGA-DX-A1L2-01 17 72608864 72608864 C A CD300E Silent p.L182L 0.07 TCGA-DX-A1L2-01 17 7360003 7360003 C T CHRNB1 Silent p.D489D 0.16 TCGA-DX-A1L2-01 19 11475026 11475026 C T DKFZP761J1410 Missense_Mutation p.S315L 0.14 tolerated(0.5) benign(0.001) TCGA-DX-A1L2-01 19 13135437 13135437 T C NFIX Intron 0.16 TCGA-DX-A1L2-01 19 13218410 13218410 G A TRMT1 Missense_Mutation p.R521C 0.12 tolerated(0.05) benign(0.035) TCGA-DX-A1L2-01 19 17768952 17768952 C T UNC13A Missense_Mutation p.R229H 0.23 tolerated_low_confidence(0.25) benign(0.375) TCGA-DX-A1L2-01 19 36317409 36317409 A G NPHS1 3'UTR 0.17 TCGA-DX-A1L2-01 19 38990310 38990310 C T RYR1 Missense_Mutation p.R2355W 0.53 possibly_damaging(0.647) TCGA-DX-A1L2-01 19 39759837 39759837 T A IFNL2 Missense_Mutation p.F80I 0.16 deleterious(0.02) possibly_damaging(0.524) TCGA-DX-A1L2-01 19 40953796 40953796 C G BLVRB Nonstop_Mutation p.*207Yext*? 0.12 TCGA-DX-A1L2-01 19 4694694 4694694 C G DPP9 Missense_Mutation p.E499Q 0.11 tolerated(0.75) benign(0.005) TCGA-DX-A1L2-01 19 47978546 47978546 G C KPTN 3'UTR 0.15 TCGA-DX-A1L2-01 19 49812955 49812955 A C SLC6A16 Missense_Mutation p.C277G 0.20 deleterious(0.01) probably_damaging(0.958) TCGA-DX-A1L2-01 19 50665993 50665993 T A IZUMO2 Intron 0.18 TCGA-DX-A1L2-01 19 50792733 50792733 C A MYH14 Missense_Mutation p.A1598E 0.11 tolerated(0.54) benign(0.06) TCGA-DX-A1L2-01 19 51219979 51219979 G A SHANK1 Silent p.D66D 0.13 TCGA-DX-A1L2-01 19 52130976 52130976 A G SIGLEC5 Missense_Mutation p.S341P 0.15 deleterious(0.02) benign(0.092) TCGA-DX-A1L2-01 19 56369480 56369480 A C NLRP4 Missense_Mutation p.N241H 0.16 deleterious(0.05) benign(0.439) TCGA-DX-A1L2-01 19 58004303 58004303 A G ZNF419 Silent p.Q127Q 0.07 TCGA-DX-A1L2-01 19 7619446 7619446 A C PNPLA6 Missense_Mutation p.Q834P 0.15 deleterious(0.03) benign(0.001) TCGA-DX-A1L2-01 19 7828315 7828315 C A CLEC4M Missense_Mutation p.P28Q 0.19 tolerated(0.3) probably_damaging(0.979) TCGA-DX-A1L2-01 1 114641799 114641799 G C SYT6 Silent p.V342V 0.16 TCGA-DX-A1L2-01 1 11982747 11982747 C G KIAA2013 Missense_Mutation p.K611N 0.15 deleterious(0) probably_damaging(0.998) TCGA-DX-A1L2-01 1 11983047 11983047 C T KIAA2013 Silent p.V511V 0.16 TCGA-DX-A1L2-01 1 11983413 11983413 C G KIAA2013 Missense_Mutation p.Q389H 0.13 tolerated(0.08) benign(0.005) TCGA-DX-A1L2-01 1 11983547 11983547 C T KIAA2013 Splice_Site p.X345_splice 0.22 TCGA-DX-A1L2-01 1 145368496 145368496 G C NBPF10 Missense_Mutation p.D3492H 0.08 probably_damaging(0.989) TCGA-DX-A1L2-01 1 147096863 147096863 G A BCL9 3'UTR 0.08 TCGA-DX-A1L2-01 1 155265486 155265486 C T PKLR Silent p.A115A 0.23 TCGA-DX-A1L2-01 1 155658167 155658167 C G YY1AP1 Missense_Mutation p.S30T 0.27 deleterious_low_confidence(0) unknown(0) TCGA-DX-A1L2-01 1 156622168 156622168 G A BCAN Missense_Mutation p.D476N 0.08 tolerated(0.11) benign(0.402) TCGA-DX-A1L2-01 1 158533005 158533005 G C OR6P1 Silent p.L130L 0.04 TCGA-DX-A1L2-01 1 159889571 159889572 - TAA TAGLN2 In_Frame_Ins p.K78_K79insL 0.20 TCGA-DX-A1L2-01 1 161135326 161135326 C G USP21 3'UTR 0.32 TCGA-DX-A1L2-01 1 161140426 161140426 C G PPOX Missense_Mutation p.S372C 0.20 deleterious(0.02) possibly_damaging(0.647) TCGA-DX-A1L2-01 1 161199383 161199383 C G TOMM40L 3'UTR 0.14 TCGA-DX-A1L2-01 1 161200332 161200332 C G TOMM40L 3'UTR 0.08 TCGA-DX-A1L2-01 1 161200659 161200659 C T NR1I3 Silent p.E296E 0.05 TCGA-DX-A1L2-01 1 161253484 161253484 C T PCP4L1 Silent p.T12T 0.04 TCGA-DX-A1L2-01 1 167096341 167096341 C G DUSP27 Missense_Mutation p.P658R 0.15 deleterious(0.01) probably_damaging(1) TCGA-DX-A1L2-01 1 167096495 167096495 C A DUSP27 Missense_Mutation p.N709K 0.15 deleterious(0.02) benign(0.157) TCGA-DX-A1L2-01 1 167096740 167096740 C T DUSP27 Missense_Mutation p.P791L 0.09 tolerated(0.34) benign(0.004) TCGA-DX-A1L2-01 1 167096832 167096832 C G DUSP27 Missense_Mutation p.P822A 0.13 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L2-01 1 167096970 167096970 C G DUSP27 Missense_Mutation p.L868V 0.11 deleterious(0) probably_damaging(0.938) TCGA-DX-A1L2-01 1 169483518 169483518 G C F5 3'UTR 0.04 TCGA-DX-A1L2-01 1 17668836 17668836 C T PADI4 Missense_Mutation p.R292C 0.28 deleterious(0.01) probably_damaging(0.984) TCGA-DX-A1L2-01 1 178490630 178490630 G T TEX35 Intron 0.19 TCGA-DX-A1L2-01 1 178490635 178490635 T G TEX35 Intron 0.22 TCGA-DX-A1L2-01 1 183273820 183273820 A C NMNAT2 Intron 0.45 TCGA-DX-A1L2-01 1 203734408 203734408 A C LAX1 5'UTR 0.45 TCGA-DX-A1L2-01 1 207649596 207649596 C A CR2 Missense_Mutation p.P912T 0.10 tolerated(0.37) benign(0.177) TCGA-DX-A1L2-01 1 240653876 240653876 T C GREM2 3'UTR 0.28 TCGA-DX-A1L2-01 1 24969799 24969799 C T SRRM1 5'UTR 0.16 TCGA-DX-A1L2-01 1 24969801 24969801 C T SRRM1 5'UTR 0.16 TCGA-DX-A1L2-01 1 26098237 26098237 A G MAN1C1 Missense_Mutation p.K411E 0.26 deleterious(0) benign(0.141) TCGA-DX-A1L2-01 1 27995782 27995782 A C IFI6 Missense_Mutation p.L15R 0.16 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L2-01 1 3412562 3412562 C T MEGF6 Missense_Mutation p.G1255S 0.25 deleterious(0) probably_damaging(1) TCGA-DX-A1L2-01 1 55534764 55534764 A G USP24 Missense_Mutation p.M2606T 0.15 deleterious_low_confidence(0) possibly_damaging(0.769) TCGA-DX-A1L2-01 1 7723664 7723664 G A CAMTA1 Missense_Mutation p.D353N 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-DX-A1L2-01 20 42788548 42788548 G A JPH2 Silent p.G293G 0.23 TCGA-DX-A1L2-01 20 58571109 58571109 G A CDH26 Missense_Mutation p.V630M 0.13 deleterious(0.01) probably_damaging(0.975) TCGA-DX-A1L2-01 20 61872719 61872719 G T NKAIN4 3'UTR 0.20 TCGA-DX-A1L2-01 21 28214297 28214297 A G ADAMTS1 Missense_Mutation p.S364P 0.31 deleterious(0.03) benign(0.072) TCGA-DX-A1L2-01 21 43833596 43833596 A G UBASH3A Missense_Mutation p.R211G 0.24 tolerated(0.11) benign(0) TCGA-DX-A1L2-01 22 16449006 16449006 A T OR11H1 Missense_Mutation p.Y267N 0.24 deleterious(0) probably_damaging(0.998) TCGA-DX-A1L2-01 22 22724250 22724250 C G IGLV7-46 Missense_Mutation p.T49S 0.05 TCGA-DX-A1L2-01 22 32550298 32550298 G A C22orf42 Silent p.D80D 0.28 TCGA-DX-A1L2-01 22 39218630 39218630 C T NPTXR Missense_Mutation p.G496E 0.20 tolerated(1) benign(0.012) TCGA-DX-A1L2-01 2 113012616 113012616 G C ZC3H8 5'UTR 0.14 TCGA-DX-A1L2-01 2 201437898 201437898 T C SGOL2 Silent p.F943F 0.38 TCGA-DX-A1L2-01 2 206588625 206588625 T A NRP2 Missense_Mutation p.S261T 0.18 deleterious(0.04) probably_damaging(0.997) TCGA-DX-A1L2-01 2 206588626 206588626 C T NRP2 Missense_Mutation p.S261F 0.17 deleterious(0.01) probably_damaging(1) TCGA-DX-A1L2-01 2 242187692 242187692 T C HDLBP Silent p.E528E 0.28 TCGA-DX-A1L2-01 2 5835825 5835825 G C SOX11 3'UTR 0.17 TCGA-DX-A1L2-01 2 70504006 70504006 G T PCYOX1 Nonsense_Mutation p.E334* 0.27 TCGA-DX-A1L2-01 2 72411239 72411239 C G EXOC6B Silent p.R758R 0.31 TCGA-DX-A1L2-01 2 85570837 85570837 C G RETSAT Missense_Mutation p.D540H 0.07 deleterious(0.04) benign(0.169) TCGA-DX-A1L2-01 2 87012912 87012912 C T CD8A 3'UTR 0.33 TCGA-DX-A1L2-01 2 9630591 9630591 A G ADAM17 Silent p.F730F 0.14 TCGA-DX-A1L2-01 2 9675993 9675993 G T ADAM17 Silent p.I140I 0.39 TCGA-DX-A1L2-01 2 96779779 96779779 G A ADRA2B 3'UTR 0.18 TCGA-DX-A1L2-01 2 99944045 99944045 C T TXNDC9 Silent p.K87K 0.15 TCGA-DX-A1L2-01 3 113680306 113680306 G C ZDHHC23 3'UTR 0.12 TCGA-DX-A1L2-01 3 153203846 153203846 C T C3orf79 Missense_Mutation p.P59S 0.30 tolerated_low_confidence(0.19) possibly_damaging(0.803) TCGA-DX-A1L2-01 3 195511251 195511251 A T MUC4 Silent p.P2400P 0.06 TCGA-DX-A1L2-01 3 19975080 19975080 C T EFHB Missense_Mutation p.R144K 0.13 tolerated_low_confidence(0.23) benign(0.004) TCGA-DX-A1L2-01 3 42984148 42984148 A G KRBOX1 3'UTR 0.10 TCGA-DX-A1L2-01 3 46307606 46307606 C G CCR3 Missense_Mutation p.H340Q 0.26 tolerated(0.1) benign(0.059) TCGA-DX-A1L2-01 3 5025842 5025842 G A BHLHE40 3'UTR 0.14 TCGA-DX-A1L2-01 3 69351552 69351552 C T FRMD4B Missense_Mutation p.V120I 0.52 deleterious(0) probably_damaging(0.997) TCGA-DX-A1L2-01 3 9027003 9027003 C T SRGAP3 3'UTR 0.20 TCGA-DX-A1L2-01 4 100521752 100521752 T G MTTP Silent p.A366A 0.24 TCGA-DX-A1L2-01 4 135121020 135121020 C G PABPC4L 3'UTR 0.31 TCGA-DX-A1L2-01 4 13579073 13579073 C G BOD1L1 Silent p.R2946R 0.35 TCGA-DX-A1L2-01 4 156835543 156835543 G C TDO2 Silent p.L265L 0.42 TCGA-DX-A1L2-01 4 162307283 162307283 G A FSTL5 Silent p.Y720Y 0.44 TCGA-DX-A1L2-01 4 169083688 169083688 G T ANXA10 Missense_Mutation p.G69W 0.18 deleterious(0.01) benign(0.015) TCGA-DX-A1L2-01 4 73280608 73280608 T G ADAMTS3 Silent p.G195G 0.17 TCGA-DX-A1L2-01 4 79350248 79350248 G C FRAS1 Splice_Site p.X1571_splice 0.28 TCGA-DX-A1L2-01 5 10403604 10403604 G A MARCH6 Missense_Mutation p.G428E 0.22 deleterious(0) probably_damaging(1) TCGA-DX-A1L2-01 5 135692859 135692859 A T TRPC7 Missense_Mutation p.C73S 0.11 deleterious(0) benign(0.367) TCGA-DX-A1L2-01 5 140166038 140166038 G T PCDHA1 Nonsense_Mutation p.E55* 0.24 TCGA-DX-A1L2-01 5 140530374 140530374 T C PCDHB6 Missense_Mutation p.V179A 0.20 deleterious(0.02) benign(0.113) TCGA-DX-A1L2-01 5 160718051 160718051 G T GABRB2 3'UTR 0.17 TCGA-DX-A1L2-01 5 168123305 168123305 T A SLIT3 Missense_Mutation p.N1025I 0.14 tolerated(0.16) possibly_damaging(0.789) TCGA-DX-A1L2-01 5 168123307 168123307 A T SLIT3 Silent p.P1024P 0.14 TCGA-DX-A1L2-01 5 175772488 175772488 C A SIMC1 3'UTR 0.17 TCGA-DX-A1L2-01 5 251510 251510 G C SDHA Missense_Mutation p.C574S 0.39 tolerated_low_confidence(0.74) benign(0.044) TCGA-DX-A1L2-01 5 31799609 31799609 T C PDZD2 Missense_Mutation p.L85P 0.05 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L2-01 5 43017498 43017498 G A CTD-2201E18.3 RNA 0.28 TCGA-DX-A1L2-01 5 57790369 57790369 G A GAPT Silent p.S2S 0.35 TCGA-DX-A1L2-01 5 60189431 60189431 T C ERCC8 Intron 0.11 TCGA-DX-A1L2-01 5 76932914 76932914 C G OTP Missense_Mutation p.G60A 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-DX-A1L2-01 5 79617381 79617381 C A SPZ1 3'UTR 0.28 TCGA-DX-A1L2-01 6 108499369 108499369 C G NR2E1 Missense_Mutation p.A189G 0.19 deleterious(0.01) probably_damaging(0.927) TCGA-DX-A1L2-01 6 111587418 111587418 C G KIAA1919 Missense_Mutation p.A218G 0.16 tolerated(0.07) benign(0.008) TCGA-DX-A1L2-01 6 139564104 139564104 G C TXLNB Silent p.L538L 0.17 TCGA-DX-A1L2-01 6 151672827 151672827 G T AKAP12 Missense_Mutation p.A1101S 0.36 tolerated(0.11) benign(0.014) TCGA-DX-A1L2-01 6 152485349 152485349 G C SYNE1 Silent p.V7913V 0.23 TCGA-DX-A1L2-01 6 28541205 28541205 G A SCAND3 Missense_Mutation p.R821W 0.16 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DX-A1L2-01 6 33248252 33248252 T G WDR46 Missense_Mutation p.S493R 0.19 deleterious(0) probably_damaging(0.993) TCGA-DX-A1L2-01 6 39873322 39873322 A G MOCS1 3'UTR 0.14 TCGA-DX-A1L2-01 6 44249962 44249962 G A TCTE1 Missense_Mutation p.T394M 0.17 tolerated(0.22) possibly_damaging(0.482) TCGA-DX-A1L2-01 6 46656482 46656482 G A TDRD6 Missense_Mutation p.R206H 0.25 tolerated(0.57) benign(0.068) TCGA-DX-A1L2-01 6 49703228 49703228 T A CRISP3 Missense_Mutation p.D112V 0.09 tolerated(0.24) benign(0.201) TCGA-DX-A1L2-01 6 82911138 82911138 C T IBTK Splice_Site p.X930_splice 0.31 TCGA-DX-A1L2-01 7 100283916 100283916 G C GIGYF1 Missense_Mutation p.R279G 0.35 tolerated(0.26) unknown(0) TCGA-DX-A1L2-01 7 102949431 102949431 G A PMPCB Silent p.A294A 0.31 TCGA-DX-A1L2-01 7 12728982 12728982 A G ARL4A 3'UTR 0.32 TCGA-DX-A1L2-01 7 127847943 127847943 G C MIR129-1 RNA 0.21 TCGA-DX-A1L2-01 7 130025166 130025166 G A CPA1 Missense_Mutation p.V323I 0.07 tolerated(0.15) benign(0.002) TCGA-DX-A1L2-01 7 130337752 130337752 C G COPG2 Missense_Mutation p.E94Q 0.65 deleterious(0.01) possibly_damaging(0.868) TCGA-DX-A1L2-01 7 40134727 40134727 A G CDK13 3'UTR 0.11 TCGA-DX-A1L2-01 7 65439619 65439619 C T GUSB Missense_Mutation p.A380T 0.18 deleterious(0.01) benign(0.277) TCGA-DX-A1L2-01 7 75677437 75677437 C G MDH2 5'UTR 0.30 TCGA-DX-A1L2-01 7 82545805 82545805 A T PCLO Missense_Mutation p.Y3833N 0.17 unknown(0) TCGA-DX-A1L2-01 8 143693468 143693468 C A ARC Splice_Site 0.20 TCGA-DX-A1L2-01 8 21767194 21767194 A G DOK2 Silent p.A289A 0.25 TCGA-DX-A1L2-01 8 37593892 37593892 T C RP11-863K10.7 Missense_Mutation p.S42G 0.21 deleterious_low_confidence(0.01) benign(0.153) TCGA-DX-A1L2-01 8 53084940 53084940 T A ST18 Missense_Mutation p.S161C 0.23 deleterious(0.01) benign(0.013) TCGA-DX-A1L2-01 8 69032459 69032459 G A PREX2 Missense_Mutation p.G1178E 0.24 deleterious(0) probably_damaging(0.999) TCGA-DX-A1L2-01 8 81577130 81577130 T A ZNF704 Missense_Mutation p.T283S 0.14 tolerated(0.76) benign(0.005) TCGA-DX-A1L2-01 8 99205061 99205061 C T NIPAL2 3'UTR 0.24 TCGA-DX-A1L2-01 9 107331677 107331677 T C OR13C8 Missense_Mutation p.S77P 0.06 deleterious(0.02) possibly_damaging(0.773) TCGA-DX-A1L2-01 9 114521079 114521079 G C C9orf84 Missense_Mutation p.H100Q 0.18 tolerated(0.93) benign(0.007) TCGA-DX-A1L2-01 9 123560880 123560880 C A RP11-27I1.4 RNA 0.18 TCGA-DX-A1L2-01 9 128728380 128728380 A G PBX3 3'UTR 0.05 TCGA-DX-A1L2-01 X 18668605 18668605 T A CDKL5 Missense_Mutation p.I958N 0.26 deleterious_low_confidence(0.02) benign(0) TCGA-DX-A1L2-01 X 22231040 22231040 C T PHEX Silent p.L555L 0.77 TCGA-DX-A1L2-01 X 27999454 27999454 C T DCAF8L1 5'UTR 0.50 TCGA-DX-A1L2-01 X 49083120 49083120 G A CACNA1F Missense_Mutation p.R452C 0.35 tolerated(0.05) possibly_damaging(0.676) TCGA-DX-A1L2-01 X 76939918 76939919 - C ATRX Frame_Shift_Ins p.V277Gfs*5 0.37 TCGA-DX-A1L2-01 X 89177282 89177282 C T TGIF2LX Silent p.R66R 0.53 TCGA-DX-A1L2-01 Y 9195434 9195434 C T TSPY8 5'Flank 0.12 TCGA-DX-A23V-01 11 119216560 119216560 G T MFRP Missense_Mutation p.P117H 0.55 deleterious(0.01) benign(0.182) TCGA-DX-A23V-01 12 102542273 102542273 C T PARPBP Intron 0.76 TCGA-DX-A23V-01 12 110224582 110224582 G A TRPV4 Missense_Mutation p.R757C 0.20 deleterious(0) probably_damaging(1) TCGA-DX-A23V-01 12 58022646 58022646 C A B4GALNT1 Missense_Mutation p.K284N 0.08 deleterious(0) probably_damaging(1) TCGA-DX-A23V-01 15 102297549 102297549 A C DNM1P47 RNA 0.56 TCGA-DX-A23V-01 16 75142390 75142390 G A ZNRF1 3'UTR 0.21 TCGA-DX-A23V-01 17 17722392 17722392 A G SREBF1 Missense_Mutation p.Y365H 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A23V-01 19 50303239 50303239 C T AP2A1 Silent p.A429A 0.11 TCGA-DX-A23V-01 19 52887558 52887558 G A ZNF880 Missense_Mutation p.C242Y 0.18 deleterious(0.01) possibly_damaging(0.823) TCGA-DX-A23V-01 1 144598744 144598744 C T RP11-640M9.2 RNA 0.12 TCGA-DX-A23V-01 1 236647205 236647205 G A EDARADD 3'Flank 0.22 TCGA-DX-A23V-01 1 89630455 89630455 G A GBP7 Silent p.L93L 0.74 TCGA-DX-A23V-01 22 46594478 46594478 G C PPARA Silent p.S66S 0.29 TCGA-DX-A23V-01 2 200213845 200213845 C T SATB2 Missense_Mutation p.R251H 0.18 tolerated(0.09) benign(0.03) TCGA-DX-A23V-01 3 11304278 11304278 T G HRH1 3'UTR 0.14 TCGA-DX-A23V-01 3 183211912 183211912 G A KLHL6 Silent p.I435I 0.28 TCGA-DX-A23V-01 6 51524066 51524066 G A PKHD1 Missense_Mutation p.R3620C 0.27 deleterious(0.01) possibly_damaging(0.724) TCGA-DX-A23V-01 7 57188683 57188683 G T ZNF479 Missense_Mutation p.Q147K 0.28 tolerated(0.06) possibly_damaging(0.501) TCGA-DX-A23V-01 9 140074930 140074930 T C ANAPC2 Missense_Mutation p.M554V 0.22 deleterious(0.01) possibly_damaging(0.688) TCGA-DX-A23V-01 X 104464405 104464405 C T TEX13A Missense_Mutation p.G158E 0.41 tolerated(1) benign(0.004) TCGA-DX-A23V-01 X 114425571 114425571 G A RBMXL3 Missense_Mutation p.G523R 0.25 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-DX-A23V-01 X 54959799 54959799 G A PFKFB1 3'UTR 0.25 TCGA-DX-A23Y-01 10 5567613 5567613 C T CALML3 3'UTR 0.45 TCGA-DX-A23Y-01 10 97923283 97923283 A - ZNF518A RNA 0.27 TCGA-DX-A23Y-01 11 1214194 1214194 T C MUC5AC RNA 0.47 TCGA-DX-A23Y-01 11 76062929 76062929 A G PRKRIR Missense_Mutation p.I422T 0.23 tolerated(0.56) benign(0.01) TCGA-DX-A23Y-01 12 100453644 100453644 T G UHRF1BP1L Missense_Mutation p.D576A 0.25 deleterious(0) probably_damaging(0.988) TCGA-DX-A23Y-01 12 101715333 101715333 G A UTP20 Silent p.V989V 0.61 TCGA-DX-A23Y-01 12 101728256 101728256 G A UTP20 Silent p.L1205L 0.61 TCGA-DX-A23Y-01 12 11546647 11546647 G T PRB2 Missense_Mutation p.P122H 0.17 deleterious(0.04) unknown(0) TCGA-DX-A23Y-01 12 121416766 121416766 G A HNF1A Silent p.G65G 0.27 TCGA-DX-A23Y-01 12 121416794 121416794 G A HNF1A Missense_Mutation p.D75N 0.25 tolerated(0.09) benign(0.306) TCGA-DX-A23Y-01 12 123200742 123200742 G A HCAR3 Silent p.S181S 0.68 TCGA-DX-A23Y-01 12 129558577 129558577 G T TMEM132D Missense_Mutation p.T1048N 0.52 deleterious(0) possibly_damaging(0.847) TCGA-DX-A23Y-01 12 4677210 4677210 C T DYRK4 Missense_Mutation p.A43V 0.20 tolerated_low_confidence(1) benign(0) TCGA-DX-A23Y-01 12 54676401 54676401 T A HNRNPA1 Missense_Mutation p.F210I 0.37 deleterious(0.05) unknown(0) TCGA-DX-A23Y-01 13 75861109 75861109 G A TBC1D4 Missense_Mutation p.T1239M 0.13 deleterious(0) possibly_damaging(0.677) TCGA-DX-A23Y-01 14 39651863 39651863 A C PNN 3'UTR 0.52 TCGA-DX-A23Y-01 16 56438907 56438907 C T AMFR Missense_Mutation p.G252R 0.57 tolerated(0.31) benign(0.011) TCGA-DX-A23Y-01 16 56438954 56438954 C G AMFR Splice_Site p.X236_splice 0.54 TCGA-DX-A23Y-01 16 57691386 57691386 C T GPR56 Silent p.A423A 0.14 TCGA-DX-A23Y-01 17 11672436 11672436 C T DNAH9 Intron 0.36 TCGA-DX-A23Y-01 17 72308191 72308191 G A DNAI2 Missense_Mutation p.R515Q 0.21 deleterious(0) possibly_damaging(0.72) TCGA-DX-A23Y-01 17 78268762 78268762 A T RNF213 Missense_Mutation p.Q572L 0.20 benign(0.014) TCGA-DX-A23Y-01 17 8193636 8193636 C T SLC25A35 Intron 0.53 TCGA-DX-A23Y-01 17 8193665 8193665 C T SLC25A35 Intron 0.47 TCGA-DX-A23Y-01 17 8194200 8194200 C T SLC25A35 Missense_Mutation p.C230Y 0.35 deleterious(0) possibly_damaging(0.709) TCGA-DX-A23Y-01 18 13885387 13885387 A T MC2R Missense_Mutation p.I44N 0.06 deleterious(0) possibly_damaging(0.56) TCGA-DX-A23Y-01 18 5415858 5415858 C T EPB41L3 Missense_Mutation p.A676T 0.16 tolerated(0.09) benign(0.108) TCGA-DX-A23Y-01 19 16860451 16860451 A G NWD1 Missense_Mutation p.Q333R 0.21 tolerated(0.62) benign(0.002) TCGA-DX-A23Y-01 19 42734837 42734837 C T GSK3A 3'UTR 0.46 TCGA-DX-A23Y-01 19 56370443 56370443 G T NLRP4 Missense_Mutation p.D562Y 0.30 deleterious(0) possibly_damaging(0.896) TCGA-DX-A23Y-01 1 171557537 171557537 A C PRRC2C Missense_Mutation p.N2696H 0.19 probably_damaging(0.967) TCGA-DX-A23Y-01 1 225539569 225539569 A - DNAH14 Frame_Shift_Del p.K2944Nfs*16 0.32 TCGA-DX-A23Y-01 1 248402501 248402501 T A OR2M4 Missense_Mutation p.S91T 0.44 tolerated(0.36) benign(0.009) TCGA-DX-A23Y-01 1 248457939 248457939 A C OR2T12 Missense_Mutation p.N314K 0.38 tolerated(0.92) benign(0) TCGA-DX-A23Y-01 1 8421513 8421513 C T RERE Missense_Mutation p.G685E 0.45 probably_damaging(1) TCGA-DX-A23Y-01 20 42694484 42694484 C T TOX2 Missense_Mutation p.R365C 0.33 deleterious(0.04) benign(0.006) TCGA-DX-A23Y-01 20 62384159 62384159 C T ZBTB46 Silent p.S426S 0.16 TCGA-DX-A23Y-01 21 43815481 43815481 G A TMPRSS3 Nonsense_Mutation p.R16* 0.22 TCGA-DX-A23Y-01 22 31486830 31486830 C T SMTN Missense_Mutation p.S301L 0.34 tolerated(0.06) possibly_damaging(0.836) TCGA-DX-A23Y-01 22 42205909 42205909 C T CCDC134 Missense_Mutation p.R44W 0.22 deleterious(0) probably_damaging(0.95) TCGA-DX-A23Y-01 2 198358123 198358123 T C HSPD1 Missense_Mutation p.N265S 0.17 tolerated(0.58) benign(0.209) TCGA-DX-A23Y-01 3 65479204 65479204 T C MAGI1 Missense_Mutation p.E178G 0.22 deleterious(0) probably_damaging(0.99) TCGA-DX-A23Y-01 4 173734827 173734827 C A GALNTL6 Silent p.I292I 0.25 TCGA-DX-A23Y-01 5 110836598 110836598 T G STARD4 Intron 0.33 TCGA-DX-A23Y-01 5 162918134 162918134 C T HMMR Silent p.Y714Y 0.09 TCGA-DX-A23Y-01 6 105821433 105821433 C T PREP Missense_Mutation p.G136S 0.29 deleterious(0.01) probably_damaging(0.983) TCGA-DX-A23Y-01 6 111688371 111688371 C G REV3L Missense_Mutation p.R2207T 0.83 deleterious(0.01) benign(0.432) TCGA-DX-A23Y-01 6 162864388 162864388 C T PARK2 Missense_Mutation p.R42H 0.17 tolerated(0.11) benign(0.104) TCGA-DX-A23Y-01 6 44122464 44122464 G A TMEM63B Silent p.V781V 0.14 TCGA-DX-A23Y-01 6 44217460 44217460 T G HSP90AB1 Missense_Mutation p.S135A 0.08 deleterious(0.05) probably_damaging(0.927) TCGA-DX-A23Y-01 6 49460091 49460091 A T CENPQ 3'UTR 0.55 TCGA-DX-A23Y-01 7 100678114 100678114 T C MUC17 Silent p.S1139S 0.21 TCGA-DX-A23Y-01 7 154684450 154684450 C G DPP6 3'UTR 0.15 TCGA-DX-A23Y-01 7 2740235 2740235 G A AMZ1 Silent p.P50P 0.22 TCGA-DX-A23Y-01 7 44153422 44153422 C T AEBP1 Silent p.P1013P 0.49 TCGA-DX-A23Y-01 8 22064428 22064428 C T BMP1 Silent p.D765D 0.20 TCGA-DX-A23Y-01 9 129796752 129796752 C G RALGPS1 Missense_Mutation p.L87V 0.14 tolerated(0.39) benign(0.093) TCGA-DX-A23Y-01 9 86354626 86354626 C T GKAP1 Missense_Mutation p.D363N 0.12 tolerated_low_confidence(0.06) benign(0.123) TCGA-DX-A23Y-01 X 120009417 120009417 G A CT47B1 Silent p.G36G 0.80 TCGA-DX-A23Y-01 X 155003566 155003566 A T SPRY3 Missense_Mutation p.Q11H 0.25 tolerated(0.27) possibly_damaging(0.533) TCGA-DX-A240-01 10 81273886 81273886 G C EIF5AL1 3'UTR 0.27 TCGA-DX-A240-01 12 126004115 126004115 G A TMEM132B Missense_Mutation p.V408I 0.19 tolerated(0.23) benign(0.317) TCGA-DX-A240-01 12 22839004 22839004 G C ETNK1 3'UTR 0.21 TCGA-DX-A240-01 12 22839049 22839049 G A ETNK1 3'UTR 0.21 TCGA-DX-A240-01 12 22839368 22839368 G A ETNK1 3'UTR 0.14 TCGA-DX-A240-01 12 48084340 48084340 C T RPAP3 Missense_Mutation p.A210T 0.04 deleterious(0.05) benign(0.165) TCGA-DX-A240-01 12 56565571 56565571 G A SMARCC2 Nonsense_Mutation p.Q662* 0.48 TCGA-DX-A240-01 12 56567544 56567544 G C SMARCC2 Missense_Mutation p.S529C 0.49 deleterious(0.04) possibly_damaging(0.7) TCGA-DX-A240-01 13 78493786 78493786 C A EDNRB 5'UTR 0.50 TCGA-DX-A240-01 14 68229454 68229454 G T ZFYVE26 Missense_Mutation p.P2032T 0.29 tolerated(0.38) possibly_damaging(0.712) TCGA-DX-A240-01 17 1961286 1961286 C T HIC1 Silent p.N453N 0.45 TCGA-DX-A240-01 17 29220695 29220695 C T ATAD5 Silent p.D1608D 0.42 TCGA-DX-A240-01 17 33801927 33801927 G A SLFN12L 3'UTR 0.38 TCGA-DX-A240-01 17 4436615 4436615 G A SPNS2 Missense_Mutation p.R389H 0.40 deleterious(0) probably_damaging(0.963) TCGA-DX-A240-01 17 60042707 60042707 G C MED13 Missense_Mutation p.P1502A 0.47 tolerated(0.11) benign(0.006) TCGA-DX-A240-01 19 45809895 45809895 C T CKM 3'UTR 0.45 TCGA-DX-A240-01 19 45809898 45809898 G C CKM 3'UTR 0.47 TCGA-DX-A240-01 1 149287701 149287701 G A RP11-403I13.8 RNA 0.29 TCGA-DX-A240-01 1 159683597 159683597 C T CRP Silent p.G131G 0.10 TCGA-DX-A240-01 1 161726834 161726834 C T DUSP12 3'UTR 0.15 TCGA-DX-A240-01 1 171765642 171765642 G C METTL13 Missense_Mutation p.V616L 0.14 deleterious(0) probably_damaging(0.983) TCGA-DX-A240-01 1 2411240 2411240 C T PLCH2 Silent p.D86D 0.47 TCGA-DX-A240-01 2 176960266 176960266 T A HOXD13 3'UTR 0.32 TCGA-DX-A240-01 3 148847470 148847470 C T HPS3 5'UTR 0.38 TCGA-DX-A240-01 3 27472860 27472860 G A SLC4A7 Missense_Mutation p.P351L 0.29 deleterious(0.04) benign(0.285) TCGA-DX-A240-01 3 52547961 52547961 G T STAB1 Missense_Mutation p.L1137F 0.33 deleterious(0.02) benign(0.106) TCGA-DX-A240-01 3 93714729 93714729 T - ARL13B Frame_Shift_Del p.L25* 0.33 TCGA-DX-A240-01 7 138447177 138447177 C T ATP6V0A4 Silent p.T140T 0.20 TCGA-DX-A240-01 7 138758730 138758730 C T ZC3HAV1 Missense_Mutation p.D582N 0.70 tolerated(1) benign(0.009) TCGA-DX-A240-01 X 27765754 27765754 G A DCAF8L2 Missense_Mutation p.D248N 0.02 deleterious(0) probably_damaging(0.984) TCGA-DX-A240-01 X 27766412 27766412 G A DCAF8L2 Missense_Mutation p.R467K 0.04 deleterious(0.02) probably_damaging(0.919) TCGA-DX-A240-01 X 31462736 31462736 T C DMD Silent p.R2982R 0.21 TCGA-DX-A2IZ-01 10 105038013 105038013 G A INA Missense_Mutation p.A349T 0.61 tolerated(0.47) possibly_damaging(0.846) TCGA-DX-A2IZ-01 10 86007502 86007502 C T RGR Missense_Mutation p.R79C 0.34 tolerated(0.06) probably_damaging(0.968) TCGA-DX-A2IZ-01 11 5730822 5730822 T C TRIM22 Missense_Mutation p.Y481H 0.34 deleterious(0) probably_damaging(1) TCGA-DX-A2IZ-01 11 92534174 92534174 T G FAT3 Missense_Mutation p.N2665K 0.46 benign(0.099) TCGA-DX-A2IZ-01 12 52863211 52863211 A G KRT6C Silent p.V481V 0.84 TCGA-DX-A2IZ-01 12 55354969 55354969 G A TESPA1 Missense_Mutation p.A517V 0.24 tolerated_low_confidence(0.29) possibly_damaging(0.682) TCGA-DX-A2IZ-01 12 56360429 56360429 G C PMEL 5'Flank 0.35 TCGA-DX-A2IZ-01 12 56386157 56386157 C A RAB5B 3'UTR 0.31 TCGA-DX-A2IZ-01 12 56386206 56386206 C G RAB5B 3'UTR 0.28 TCGA-DX-A2IZ-01 12 56386221 56386221 C T RAB5B 3'UTR 0.28 TCGA-DX-A2IZ-01 12 56386336 56386336 C T RAB5B 3'UTR 0.22 TCGA-DX-A2IZ-01 12 56549354 56549354 C T MYL6B Silent p.L166L 0.09 TCGA-DX-A2IZ-01 12 56718437 56718437 C T PAN2 Silent p.K552K 0.09 TCGA-DX-A2IZ-01 12 57572170 57572170 G T LRP1 Missense_Mutation p.D1464Y 0.33 probably_damaging(0.977) TCGA-DX-A2IZ-01 12 57626538 57626538 G A SHMT2 Missense_Mutation p.G257S 0.10 deleterious(0) probably_damaging(1) TCGA-DX-A2IZ-01 12 57918117 57918117 G A MBD6 Missense_Mutation p.D11N 0.18 deleterious_low_confidence(0) unknown(0) TCGA-DX-A2IZ-01 12 69202130 69202130 G C MDM2 5'UTR 0.03 TCGA-DX-A2IZ-01 12 69986852 69986852 C G CCT2 Missense_Mutation p.L283V 0.88 tolerated(0.28) benign(0.015) TCGA-DX-A2IZ-01 12 72318174 72318174 T C TBC1D15 3'UTR 0.18 TCGA-DX-A2IZ-01 12 88505083 88505083 C T CEP290 Missense_Mutation p.G755R 0.94 benign(0.034) TCGA-DX-A2IZ-01 12 88505548 88505548 C T CEP290 Missense_Mutation p.E714K 0.90 probably_damaging(0.999) TCGA-DX-A2IZ-01 12 88505602 88505602 C G CEP290 Missense_Mutation p.D696H 0.89 probably_damaging(1) TCGA-DX-A2IZ-01 14 51446051 51446051 C T TRIM9 Intron 0.29 TCGA-DX-A2IZ-01 14 96875257 96875257 G A AK7 Silent p.A159A 0.11 TCGA-DX-A2IZ-01 14 96909100 96909100 G - AK7 Frame_Shift_Del p.V242Ffs*8 0.14 TCGA-DX-A2IZ-01 15 35746987 35746987 G T DPH6 Missense_Mutation p.A116D 0.82 deleterious(0) probably_damaging(0.99) TCGA-DX-A2IZ-01 15 78575602 78575608 AAGTATG - WDR61 3'UTR 0.82 TCGA-DX-A2IZ-01 15 79292172 79292172 C T RASGRF1 Missense_Mutation p.A903T 0.29 tolerated(0.17) benign(0.03) TCGA-DX-A2IZ-01 15 91565599 91565599 C A VPS33B 5'UTR 0.19 TCGA-DX-A2IZ-01 15 99673642 99673642 G C SYNM 3'UTR 0.44 TCGA-DX-A2IZ-01 16 2653400 2653400 C G PDPK1 3'Flank 0.37 TCGA-DX-A2IZ-01 16 29675786 29675786 G A SPN Missense_Mutation p.R246Q 0.40 tolerated(0.62) benign(0.02) TCGA-DX-A2IZ-01 17 39722311 39722311 A T KRT9 3'UTR 0.42 TCGA-DX-A2IZ-01 19 46303816 46303816 T C RSPH6A Missense_Mutation p.M602V 0.33 tolerated(0.3) benign(0.103) TCGA-DX-A2IZ-01 19 55715272 55715272 C T PTPRH Missense_Mutation p.R255Q 0.39 unknown(0) TCGA-DX-A2IZ-01 1 15753676 15753676 G A EFHD2 Missense_Mutation p.G163R 0.54 deleterious(0.02) probably_damaging(1) TCGA-DX-A2IZ-01 1 198685967 198685967 C T PTPRC Missense_Mutation p.A483V 0.40 tolerated(0.06) benign(0.133) TCGA-DX-A2IZ-01 1 23111370 23111370 C T EPHB2 Silent p.G204G 0.11 TCGA-DX-A2IZ-01 1 52263953 52263953 C T NRD1 Missense_Mutation p.E926K 0.89 deleterious(0) probably_damaging(0.996) TCGA-DX-A2IZ-01 1 52264020 52264020 C T NRD1 Silent p.L903L 0.88 TCGA-DX-A2IZ-01 1 52264037 52264037 C T NRD1 Missense_Mutation p.D898N 0.85 deleterious(0) benign(0.141) TCGA-DX-A2IZ-01 1 62672850 62672850 A G L1TD1 Missense_Mutation p.R184G 0.09 deleterious(0.02) unknown(0) TCGA-DX-A2IZ-01 20 39833134 39833134 G A ZHX3 Silent p.N141N 0.48 TCGA-DX-A2IZ-01 2 158115495 158115495 T G GALNT5 Missense_Mutation p.L301V 0.35 tolerated(0.06) benign(0.024) TCGA-DX-A2IZ-01 2 175666532 175666532 C A CHN1 Missense_Mutation p.D371Y 0.39 deleterious(0.01) probably_damaging(0.978) TCGA-DX-A2IZ-01 2 202259569 202259569 T G TRAK2 Missense_Mutation p.K309N 0.34 tolerated(0.51) benign(0.333) TCGA-DX-A2IZ-01 3 57443570 57443570 G A DNAH12 Nonsense_Mutation p.R1049* 0.47 TCGA-DX-A2IZ-01 3 93769680 93769680 C - ARL13B Frame_Shift_Del p.P386Lfs*41 0.35 TCGA-DX-A2IZ-01 4 83350511 83350511 G A HNRNPDL Silent p.H111H 0.69 TCGA-DX-A2IZ-01 5 120022441 120022441 A G PRR16 3'UTR 0.28 TCGA-DX-A2IZ-01 5 132545944 132545944 G A FSTL4 Missense_Mutation p.S552L 0.53 deleterious(0.01) benign(0.111) TCGA-DX-A2IZ-01 5 150097914 150097914 G - DCTN4 Frame_Shift_Del p.P339Qfs*8 0.28 TCGA-DX-A2IZ-01 5 173084 173084 C G PLEKHG4B Missense_Mutation p.L1019V 0.78 deleterious(0.04) benign(0.111) TCGA-DX-A2IZ-01 5 173125 173125 C G PLEKHG4B Missense_Mutation p.S1032R 0.78 deleterious(0) probably_damaging(0.997) TCGA-DX-A2IZ-01 5 173131 173131 C A PLEKHG4B Silent p.T1034T 0.77 TCGA-DX-A2IZ-01 6 111680107 111680107 A C REV3L Silent p.S2330S 0.32 TCGA-DX-A2IZ-01 6 2840713 2840713 T G SERPINB1 Silent p.S36S 0.30 TCGA-DX-A2IZ-01 6 4061541 4061541 T A PRPF4B 3'UTR 0.46 TCGA-DX-A2IZ-01 7 105173306 105173306 C A RINT1 Silent p.L26L 0.06 TCGA-DX-A2IZ-01 7 107399804 107399804 T C CBLL1 3'UTR 0.44 TCGA-DX-A2IZ-01 7 116371840 116371840 C T MET Missense_Mutation p.T440I 0.28 deleterious(0) probably_damaging(0.998) TCGA-DX-A2IZ-01 7 29605874 29605874 G A PRR15 5'UTR 0.53 TCGA-DX-A2IZ-01 7 82784233 82784233 G C PCLO Missense_Mutation p.S575C 0.42 unknown(0) TCGA-DX-A2IZ-01 8 125113350 125113350 C A FER1L6 Silent p.G1632G 0.40 TCGA-DX-A2IZ-01 8 142229902 142229902 G A SLC45A4 Missense_Mutation p.R102W 0.04 deleterious(0) possibly_damaging(0.905) TCGA-DX-A2IZ-01 8 22547501 22547501 C T EGR3 3'UTR 0.51 TCGA-DX-A2IZ-01 8 62371079 62371081 TGC - CLVS1 In_Frame_Del p.C319del 0.53 TCGA-DX-A2IZ-01 X 30261754 30261754 G A MAGEB4 3'UTR 1.00 TCGA-DX-A2J0-01 10 18874990 18874990 G C NSUN6 Missense_Mutation p.N270K 0.23 tolerated(0.22) benign(0.008) TCGA-DX-A2J0-01 10 54530489 54530489 G A MBL2 Missense_Mutation p.P82L 0.37 tolerated(0.09) benign(0.285) TCGA-DX-A2J0-01 10 5567560 5567560 C T CALML3 3'UTR 0.66 TCGA-DX-A2J0-01 10 82394246 82394246 C A SH2D4B Intron 0.12 TCGA-DX-A2J0-01 10 87362184 87362184 G A GRID1 Missense_Mutation p.A959V 0.37 deleterious_low_confidence(0.05) benign(0.085) TCGA-DX-A2J0-01 11 25071591 25071591 A G LUZP2 Missense_Mutation p.Q258R 0.64 tolerated(0.26) benign(0.001) TCGA-DX-A2J0-01 11 5474866 5474866 C T OR51I2 Nonsense_Mutation p.R50* 0.08 TCGA-DX-A2J0-01 11 68529106 68529106 T A CPT1A Missense_Mutation p.H642L 0.71 tolerated(0.38) benign(0.001) TCGA-DX-A2J0-01 11 7092514 7092514 A G NLRP14 Missense_Mutation p.D1086G 0.63 tolerated(0.21) benign(0.069) TCGA-DX-A2J0-01 12 34175490 34175490 A T ALG10 5'UTR 0.44 TCGA-DX-A2J0-01 12 53072523 53072523 C A KRT1 Missense_Mutation p.Q203H 0.38 deleterious(0) probably_damaging(0.999) TCGA-DX-A2J0-01 12 56081767 56081767 C T ITGA7 Silent p.L1061L 0.32 TCGA-DX-A2J0-01 12 58151712 58151712 G C MARCH9 Intron 0.04 TCGA-DX-A2J0-01 12 64823969 64823969 G T XPOT Missense_Mutation p.E626D 0.47 tolerated(0.49) benign(0.002) TCGA-DX-A2J0-01 12 71155347 71155347 A G PTPRR Silent p.S177S 0.07 TCGA-DX-A2J0-01 12 81025993 81025993 C T PTPRQ Silent p.T1899T 0.16 TCGA-DX-A2J0-01 14 103372471 103372472 - AC TRAF3 3'UTR 0.52 TCGA-DX-A2J0-01 14 106206493 106206493 G A IGHG1 Silent p.D341D 0.20 TCGA-DX-A2J0-01 14 19553531 19553531 G A POTEG Missense_Mutation p.G39S 0.07 deleterious_low_confidence(0) possibly_damaging(0.634) TCGA-DX-A2J0-01 14 22265846 22265846 C A TRAV8-1 Missense_Mutation p.N43K 0.52 tolerated(0.19) benign(0.098) TCGA-DX-A2J0-01 14 64990545 64990545 C T ZBTB1 3'UTR 0.50 TCGA-DX-A2J0-01 17 2203218 2203218 C A SMG6 Nonsense_Mutation p.G277* 0.50 TCGA-DX-A2J0-01 17 68172523 68172523 C A KCNJ2 3'UTR 0.27 TCGA-DX-A2J0-01 17 7980435 7980435 G A ALOX12B Missense_Mutation p.T383M 0.46 tolerated(0.06) probably_damaging(0.997) TCGA-DX-A2J0-01 18 53131313 53131313 C T TCF4 Silent p.P169P 0.72 TCGA-DX-A2J0-01 19 18729058 18729058 A G TMEM59L Missense_Mutation p.N253S 0.45 tolerated(0.19) benign(0.026) TCGA-DX-A2J0-01 19 49253926 49253926 C T FUT1 Missense_Mutation p.G205S 0.70 tolerated(0.69) possibly_damaging(0.483) TCGA-DX-A2J0-01 19 53959188 53959188 G A ZNF761 RNA 0.73 TCGA-DX-A2J0-01 1 104116343 104116343 G A AMY2B Missense_Mutation p.R176H 0.32 deleterious(0.01) possibly_damaging(0.777) TCGA-DX-A2J0-01 1 160460928 160460928 C G SLAMF6 Missense_Mutation p.Q211H 0.25 deleterious(0) probably_damaging(0.971) TCGA-DX-A2J0-01 1 162735847 162735847 A G DDR2 Missense_Mutation p.T386A 0.45 tolerated(0.52) benign(0.004) TCGA-DX-A2J0-01 1 179989287 179989287 C - CEP350 Frame_Shift_Del p.T793Ifs*8 0.58 TCGA-DX-A2J0-01 1 206592751 206592751 A C SRGAP2 Silent p.R404R 0.76 TCGA-DX-A2J0-01 1 244780873 244780873 G C C1orf101 Missense_Mutation p.D845H 0.24 deleterious(0) probably_damaging(0.996) TCGA-DX-A2J0-01 1 55077385 55077385 G C FAM151A Missense_Mutation p.D278E 0.32 deleterious(0.05) possibly_damaging(0.859) TCGA-DX-A2J0-01 1 67804363 67804363 C A IL12RB2 Missense_Mutation p.Q339K 0.61 deleterious(0.03) possibly_damaging(0.698) TCGA-DX-A2J0-01 1 762305 762306 - AG LINC00115 RNA 0.50 TCGA-DX-A2J0-01 20 3652874 3652874 G C ADAM33 Missense_Mutation p.L502V 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-DX-A2J0-01 20 47895155 47895155 G A ZNFX1 5'Flank 0.50 TCGA-DX-A2J0-01 22 20731541 20731541 C T USP41 Missense_Mutation p.G53D 0.39 deleterious(0.01) probably_damaging(1) TCGA-DX-A2J0-01 22 38131066 38131066 G A TRIOBP Missense_Mutation p.A1575T 0.41 tolerated_low_confidence(0.1) benign(0.031) TCGA-DX-A2J0-01 22 50657804 50657804 G C TUBGCP6 Missense_Mutation p.A1466G 0.30 tolerated(0.12) benign(0.057) TCGA-DX-A2J0-01 2 168108282 168108282 T C XIRP2 Silent p.D3460D 0.47 TCGA-DX-A2J0-01 3 47386357 47386357 T A KLHL18 3'UTR 0.14 TCGA-DX-A2J0-01 4 184562177 184562177 T C RWDD4 3'UTR 0.44 TCGA-DX-A2J0-01 4 36292014 36292014 G C DTHD1 Missense_Mutation p.D178H 0.35 deleterious(0.03) possibly_damaging(0.479) TCGA-DX-A2J0-01 4 90170621 90170621 G A GPRIN3 Missense_Mutation p.S214F 0.29 tolerated(0.06) possibly_damaging(0.73) TCGA-DX-A2J0-01 5 179300189 179300189 G A TBC1D9B Missense_Mutation p.A749V 0.64 deleterious(0.04) possibly_damaging(0.792) TCGA-DX-A2J0-01 6 124979412 124979412 G A NKAIN2 Silent p.T118T 0.30 TCGA-DX-A2J0-01 7 105278824 105278824 C T ATXN7L1 Missense_Mutation p.R393K 0.12 tolerated(1) benign(0.003) TCGA-DX-A2J0-01 7 48556449 48556449 G A ABCA13 Missense_Mutation p.R4590Q 0.39 probably_damaging(0.99) TCGA-DX-A2J0-01 8 30694789 30694789 T - TEX15 Frame_Shift_Del p.N2621Ifs*5 0.21 TCGA-DX-A2J0-01 8 3253747 3253747 G A CSMD1 Silent p.R854R 0.35 TCGA-DX-A2J0-01 9 101980657 101980657 A T ALG2 Nonsense_Mutation p.Y270* 0.32 TCGA-DX-A2J0-01 9 136080786 136080786 G C OBP2B 3'UTR 0.52 TCGA-DX-A2J0-01 9 138441695 138441695 C G OBP2A 3'UTR 0.08 TCGA-DX-A2J0-01 9 18928014 18928014 A C FAM154A 3'UTR 0.39 TCGA-DX-A2J0-01 X 119005266 119005266 C T RNF113A Missense_Mutation p.R104H 0.30 deleterious(0.05) benign(0.021) TCGA-DX-A2J0-01 X 130419397 130419397 G A IGSF1 Silent p.P141P 0.56 TCGA-DX-A2J1-01 10 97684071 97684071 A T C10orf131 Missense_Mutation p.D25V 0.09 deleterious(0.03) probably_damaging(0.972) TCGA-DX-A2J1-01 11 102239042 102239042 C T BIRC2 Missense_Mutation p.H377Y 0.04 tolerated(0.11) benign(0.021) TCGA-DX-A2J1-01 11 70255965 70255965 C T CTTN Nonsense_Mutation p.Q64* 0.16 TCGA-DX-A2J1-01 12 110784644 110784644 G T ATP2A2 3'UTR 0.14 TCGA-DX-A2J1-01 12 352956 352956 C T SLC6A13 Missense_Mutation p.V76I 0.09 tolerated(1) benign(0.001) TCGA-DX-A2J1-01 12 51857442 51857442 C G SLC4A8 Missense_Mutation p.H431Q 0.26 tolerated(0.57) benign(0.003) TCGA-DX-A2J1-01 12 54975829 54975829 C T PPP1R1A Missense_Mutation p.E112K 0.86 deleterious(0.03) possibly_damaging(0.657) TCGA-DX-A2J1-01 12 54975830 54975830 C G PPP1R1A Missense_Mutation p.Q111H 0.85 tolerated(0.08) probably_damaging(0.933) TCGA-DX-A2J1-01 12 57648468 57648468 C G R3HDM2 3'UTR 0.10 TCGA-DX-A2J1-01 12 57693914 57693914 G A R3HDM2 Silent p.S86S 0.43 TCGA-DX-A2J1-01 12 77458410 77458410 C G E2F7 Missense_Mutation p.E2D 0.69 tolerated(0.05) benign(0.055) TCGA-DX-A2J1-01 12 8048070 8048070 C G NANOGP1 5'Flank 0.08 TCGA-DX-A2J1-01 14 104638087 104638087 G T KIF26A Missense_Mutation p.A381S 0.18 tolerated(1) benign(0.006) TCGA-DX-A2J1-01 15 33023774 33023774 G A GREM1 3'UTR 0.12 TCGA-DX-A2J1-01 15 43552491 43552491 C T TGM5 Silent p.P65P 0.13 TCGA-DX-A2J1-01 17 18668118 18668118 T G FBXW10 Silent p.T499T 0.15 TCGA-DX-A2J1-01 17 3417131 3417131 C T TRPV3 3'UTR 0.26 TCGA-DX-A2J1-01 17 40321679 40321679 A G KCNH4 Missense_Mutation p.V469A 0.15 tolerated(0.18) benign(0.012) TCGA-DX-A2J1-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.20 TCGA-DX-A2J1-01 18 3879315 3879315 G A DLGAP1 Missense_Mutation p.R252W 0.17 deleterious(0.01) benign(0.013) TCGA-DX-A2J1-01 19 18972946 18972946 C T UPF1 Missense_Mutation p.A862V 0.08 deleterious(0) possibly_damaging(0.846) TCGA-DX-A2J1-01 19 44934383 44934383 C T ZNF229 Silent p.A191A 0.10 TCGA-DX-A2J1-01 1 101339134 101339134 A G EXTL2 3'UTR 0.12 TCGA-DX-A2J1-01 1 173486699 173486699 C T SLC9C2 Missense_Mutation p.V962I 0.24 deleterious(0.04) benign(0.002) TCGA-DX-A2J1-01 1 184680917 184680917 C A EDEM3 Missense_Mutation p.S544I 0.20 deleterious(0.03) benign(0.035) TCGA-DX-A2J1-01 21 39086687 39086687 G A KCNJ6 Missense_Mutation p.T258M 0.11 tolerated(0.17) probably_damaging(1) TCGA-DX-A2J1-01 22 17579665 17579665 C T IL17RA Missense_Mutation p.A104V 0.15 deleterious(0.02) benign(0.129) TCGA-DX-A2J1-01 3 19575241 19575241 G C KCNH8 Missense_Mutation p.D992H 0.12 tolerated_low_confidence(0.09) benign(0.001) TCGA-DX-A2J1-01 4 66356412 66356412 C T EPHA5 Missense_Mutation p.R362Q 0.32 tolerated(0.39) possibly_damaging(0.666) TCGA-DX-A2J1-01 5 150886785 150886785 C T FAT2 Silent p.P4149P 0.12 TCGA-DX-A2J1-01 5 153065889 153065889 G A GRIA1 Silent p.K388K 0.21 TCGA-DX-A2J1-01 6 96660364 96660364 A - FUT9 3'UTR 0.17 TCGA-DX-A2J1-01 7 142045302 142045302 G T TRBV4-2 5'UTR 0.29 TCGA-DX-A2J1-01 7 150174547 150174547 C T GIMAP8 Silent p.Y559Y 0.17 TCGA-DX-A2J1-01 8 144734746 144734746 C T ZNF623 3'UTR 0.11 TCGA-DX-A2J1-01 9 115923901 115923901 C T SLC31A2 Silent p.I62I 0.95 TCGA-DX-A2J1-01 9 115923945 115923945 C G SLC31A2 Nonsense_Mutation p.S77* 0.94 TCGA-DX-A2J1-01 9 23765028 23765028 C T ELAVL2 Intron 0.20 TCGA-DX-A2J1-01 X 44703772 44703772 G A DUSP21 Missense_Mutation p.A132T 0.32 deleterious(0) probably_damaging(0.99) TCGA-DX-A2J4-01 11 62545600 62545600 G A TAF6L Missense_Mutation p.V129I 0.17 deleterious(0) benign(0.306) TCGA-DX-A2J4-01 11 63527057 63527057 C T RTN3 3'UTR 0.22 TCGA-DX-A2J4-01 12 48073362 48073362 C T RPAP3 Missense_Mutation p.G401R 0.60 tolerated(0.18) probably_damaging(0.996) TCGA-DX-A2J4-01 12 48075596 48075596 C T RPAP3 Missense_Mutation p.E333K 0.54 tolerated(0.51) benign(0.01) TCGA-DX-A2J4-01 12 48185677 48185677 G A HDAC7 Missense_Mutation p.R597W 0.06 deleterious(0) possibly_damaging(0.686) TCGA-DX-A2J4-01 12 52647544 52647544 G A KRT7 3'Flank 0.47 TCGA-DX-A2J4-01 12 52648120 52648120 G C KRT121P RNA 0.37 TCGA-DX-A2J4-01 12 52714784 52714784 C T KRT83 Silent p.K112K 0.04 TCGA-DX-A2J4-01 12 52778920 52778920 G C KRT84 Silent p.L150L 0.03 TCGA-DX-A2J4-01 12 58023579 58023579 G A B4GALNT1 Intron 0.18 TCGA-DX-A2J4-01 12 58024808 58024808 G C B4GALNT1 Missense_Mutation p.L149V 0.20 tolerated(1) benign(0.003) TCGA-DX-A2J4-01 12 58025114 58025114 G A B4GALNT1 Silent p.S84S 0.16 TCGA-DX-A2J4-01 12 64377714 64377714 C G SRGAP1 Intron 0.78 TCGA-DX-A2J4-01 12 64377909 64377909 C T SRGAP1 Missense_Mutation p.H84Y 0.78 deleterious(0.03) possibly_damaging(0.903) TCGA-DX-A2J4-01 12 64377912 64377912 C T SRGAP1 Nonsense_Mutation p.Q85* 0.77 TCGA-DX-A2J4-01 12 85408281 85408281 G A TSPAN19 Silent p.I244I 0.62 TCGA-DX-A2J4-01 14 103173719 103173719 A G RCOR1 Missense_Mutation p.N177S 0.23 deleterious(0.05) possibly_damaging(0.64) TCGA-DX-A2J4-01 14 23994340 23994340 T - ZFHX2 Frame_Shift_Del p.E1604Gfs*116 0.15 TCGA-DX-A2J4-01 14 38725542 38725542 G T CLEC14A 5'UTR 0.17 TCGA-DX-A2J4-01 17 37351189 37351189 C G CACNB1 Missense_Mutation p.R40P 0.16 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-DX-A2J4-01 18 14542900 14542900 A G POTEC Silent p.T82T 0.57 TCGA-DX-A2J4-01 18 2795948 2795948 T A SMCHD1 Missense_Mutation p.D1907E 0.35 tolerated(0.69) benign(0.003) TCGA-DX-A2J4-01 19 36545945 36545945 A G WDR62 Silent p.G24G 0.27 TCGA-DX-A2J4-01 19 41813437 41813437 G A HNRNPUL1 3'Flank 0.76 TCGA-DX-A2J4-01 1 108926235 108926235 C T NBPF6 Intron 0.11 TCGA-DX-A2J4-01 1 232607223 232607223 C T SIPA1L2 Missense_Mutation p.E713K 0.23 deleterious(0) probably_damaging(0.999) TCGA-DX-A2J4-01 1 65243596 65243597 - T RAVER2 Frame_Shift_Ins p.L204Ifs*3 0.09 TCGA-DX-A2J4-01 20 34797668 34797668 C T EPB41L1 Missense_Mutation p.L643F 0.24 deleterious(0.04) probably_damaging(0.937) TCGA-DX-A2J4-01 21 42851103 42851103 G A TMPRSS2 Missense_Mutation p.H264Y 0.62 tolerated(0.8) benign(0.012) TCGA-DX-A2J4-01 22 25627745 25627745 T A CRYBB2 3'UTR 0.12 TCGA-DX-A2J4-01 22 30423434 30423434 G A MTMR3 3'UTR 0.24 TCGA-DX-A2J4-01 2 198540166 198540166 C T RFTN2 Missense_Mutation p.R6K 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A2J4-01 2 227662435 227662435 G A IRS1 Silent p.A340A 0.20 TCGA-DX-A2J4-01 3 87322591 87322591 C A POU1F1 Silent p.S66S 0.28 TCGA-DX-A2J4-01 4 3137957 3137957 T G HTT Nonsense_Mutation p.L901* 0.09 TCGA-DX-A2J4-01 6 129813551 129813551 G C LAMA2 Missense_Mutation p.A2723P 0.24 tolerated(0.28) benign(0.003) TCGA-DX-A2J4-01 6 46129094 46129094 G C ENPP5 Missense_Mutation p.A468G 0.13 tolerated_low_confidence(0.37) benign(0) TCGA-DX-A2J4-01 9 6329394 6329394 C T TPD52L3 3'UTR 0.16 TCGA-DX-A3LS-01 10 119014856 119014856 G A SLC18A2 Missense_Mutation p.A257T 0.17 tolerated(0.41) benign(0.029) TCGA-DX-A3LS-01 10 132891045 132891045 G C TCERG1L 3'UTR 0.23 TCGA-DX-A3LS-01 11 6739525 6739525 T G GVINP1 RNA 0.27 TCGA-DX-A3LS-01 12 102419810 102419810 G A CCDC53 Missense_Mutation p.P148S 0.10 deleterious(0.05) probably_damaging(0.999) TCGA-DX-A3LS-01 12 11420936 11420936 G A PRB3 Missense_Mutation p.P83S 0.50 tolerated(0.09) unknown(0) TCGA-DX-A3LS-01 12 121747544 121747544 C T ANAPC5 Silent p.V672V 0.68 TCGA-DX-A3LS-01 12 122247621 122247621 C T SETD1B Missense_Mutation p.A257V 0.44 possibly_damaging(0.908) TCGA-DX-A3LS-01 12 122247833 122247833 C T SETD1B Missense_Mutation p.H328Y 0.48 probably_damaging(0.99) TCGA-DX-A3LS-01 12 123641228 123641228 G C MPHOSPH9 3'UTR 0.06 TCGA-DX-A3LS-01 12 133384827 133384827 G C GOLGA3 Missense_Mutation p.N276K 0.45 deleterious_low_confidence(0.02) benign(0.167) TCGA-DX-A3LS-01 12 15260815 15260815 G A RERG 3'UTR 0.36 TCGA-DX-A3LS-01 12 49942767 49942767 G A KCNH3 Missense_Mutation p.D427N 0.08 tolerated_low_confidence(0.38) benign(0.078) TCGA-DX-A3LS-01 12 49948143 49948143 G A KCNH3 Missense_Mutation p.E648K 0.09 deleterious(0) benign(0.348) TCGA-DX-A3LS-01 12 49948182 49948182 G A KCNH3 Missense_Mutation p.D661N 0.11 tolerated(0.1) possibly_damaging(0.868) TCGA-DX-A3LS-01 12 49948321 49948321 G A KCNH3 Missense_Mutation p.G707E 0.07 deleterious(0) possibly_damaging(0.829) TCGA-DX-A3LS-01 12 49949614 49949614 G A KCNH3 Missense_Mutation p.G783E 0.06 tolerated(0.43) benign(0.031) TCGA-DX-A3LS-01 12 49949615 49949615 G A KCNH3 Silent p.G783G 0.07 TCGA-DX-A3LS-01 12 49992542 49992542 G A FAM186B Missense_Mutation p.P787L 0.11 deleterious(0) probably_damaging(1) TCGA-DX-A3LS-01 12 49992703 49992703 G A FAM186B Silent p.I733I 0.06 TCGA-DX-A3LS-01 12 50036712 50036712 G A PRPF40B Splice_Site p.X707_splice 0.10 TCGA-DX-A3LS-01 12 50040676 50040676 G A FMNL3 Silent p.I996I 0.04 TCGA-DX-A3LS-01 12 50042925 50042925 G A FMNL3 Missense_Mutation p.S801F 0.25 deleterious(0) probably_damaging(0.994) TCGA-DX-A3LS-01 12 56480358 56480358 T G ERBB3 Silent p.L155L 0.32 TCGA-DX-A3LS-01 12 58163174 58163174 G A METTL1 Missense_Mutation p.T196I 0.29 deleterious(0.02) benign(0.401) TCGA-DX-A3LS-01 12 58163396 58163396 G A METTL1 Silent p.I175I 0.35 TCGA-DX-A3LS-01 12 69229612 69229612 C T MDM2 Missense_Mutation p.L230F 0.04 tolerated(0.13) probably_damaging(0.994) TCGA-DX-A3LS-01 14 106791034 106791034 C T IGHV3-30 Missense_Mutation p.E108K 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.485) TCGA-DX-A3LS-01 15 26791472 26791472 G A GABRB3 3'UTR 0.17 TCGA-DX-A3LS-01 15 52571803 52571803 C T MYO5C Silent p.E69E 0.13 TCGA-DX-A3LS-01 15 93616993 93616993 G C RGMA 5'UTR 0.15 TCGA-DX-A3LS-01 16 55584939 55584939 A - LPCAT2 Frame_Shift_Del p.I381Lfs*8 0.12 TCGA-DX-A3LS-01 17 38978609 38978609 A G KRT10 Silent p.L77L 0.17 TCGA-DX-A3LS-01 17 39766252 39766252 G A KRT16 Missense_Mutation p.R453C 0.20 deleterious(0.02) possibly_damaging(0.483) TCGA-DX-A3LS-01 17 5072153 5072153 G C USP6 Missense_Mutation p.S1107T 0.25 tolerated_low_confidence(0.3) probably_damaging(0.95) TCGA-DX-A3LS-01 1 152883175 152883175 A T IVL Missense_Mutation p.K301M 0.28 tolerated(0.06) probably_damaging(0.972) TCGA-DX-A3LS-01 1 22073626 22073626 T A USP48 Nonsense_Mutation p.K309* 0.13 TCGA-DX-A3LS-01 22 50968892 50968892 C A ODF3B 3'UTR 0.32 TCGA-DX-A3LS-01 2 26410287 26410287 G A GAREML Missense_Mutation p.A596T 0.17 tolerated(0.95) benign(0.001) TCGA-DX-A3LS-01 3 113176201 113176201 C T SPICE1 Missense_Mutation p.R480H 0.12 tolerated(0.09) benign(0.398) TCGA-DX-A3LS-01 3 130398323 130398323 G T PIK3R4 Missense_Mutation p.Q1305K 0.26 tolerated(0.39) benign(0.021) TCGA-DX-A3LS-01 3 133648215 133648215 C T C3orf36 5'UTR 0.07 TCGA-DX-A3LS-01 3 99891167 99891167 C T CMSS1 Missense_Mutation p.A196V 0.15 deleterious(0) benign(0.04) TCGA-DX-A3LS-01 5 1238154 1238154 C T SLC6A18 Silent p.L237L 0.53 TCGA-DX-A3LS-01 5 140735522 140735522 G A PCDHGA4 Missense_Mutation p.R252H 0.14 deleterious_low_confidence(0.01) benign(0.074) TCGA-DX-A3LS-01 5 169533511 169533511 G C FOXI1 Missense_Mutation p.V184L 0.17 deleterious(0) probably_damaging(0.997) TCGA-DX-A3LS-01 5 76709035 76709035 C T PDE8B Silent p.I604I 0.20 TCGA-DX-A3LS-01 5 94803639 94803640 AG - TTC37 Frame_Shift_Del p.S1517Yfs*18 0.16 TCGA-DX-A3LS-01 6 119514953 119514953 C T MAN1A1 Missense_Mutation p.D439N 0.26 tolerated(0.14) benign(0.073) TCGA-DX-A3LS-01 6 29641137 29641137 G A ZFP57 Missense_Mutation p.R251C 0.27 deleterious(0) probably_damaging(0.998) TCGA-DX-A3LS-01 6 88757758 88757758 C T SPACA1 Silent p.G45G 0.12 TCGA-DX-A3LS-01 7 128595344 128595344 G T TNPO3 3'UTR 0.13 TCGA-DX-A3LS-01 7 4917282 4917282 C T RADIL Silent p.S163S 0.16 TCGA-DX-A3LS-01 7 98592415 98592415 C T TRRAP Missense_Mutation p.A3404V 0.14 possibly_damaging(0.691) TCGA-DX-A3LS-01 8 43159855 43159855 C G RNU6-104P 3'Flank 0.45 TCGA-DX-A3LS-01 8 43159910 43159910 C T RNU6-104P 3'Flank 0.44 TCGA-DX-A3LS-01 9 108246756 108246756 A G FSD1L Missense_Mutation p.M187V 0.49 tolerated(0.19) benign(0.001) TCGA-DX-A3LS-01 9 130438121 130438121 C T STXBP1 Silent p.I383I 0.21 TCGA-DX-A3LS-01 9 130438152 130438152 C T STXBP1 Silent p.L394L 0.20 TCGA-DX-A3LS-01 9 130438208 130438208 C G STXBP1 Missense_Mutation p.I412M 0.19 deleterious(0) probably_damaging(0.998) TCGA-DX-A3LS-01 9 135941960 135941960 G A CEL Silent p.V197V 0.11 TCGA-DX-A3LS-01 9 135944447 135944447 G A CEL Missense_Mutation p.D366N 0.12 deleterious(0.01) possibly_damaging(0.708) TCGA-DX-A3LS-01 9 136269043 136269043 G C C9orf96 Splice_Site p.X535_splice 0.11 TCGA-DX-A3LS-01 9 136270458 136270458 G A C9orf96 Silent p.V652V 0.24 TCGA-DX-A3LS-01 9 136671257 136671257 G C VAV2 Missense_Mutation p.S261C 0.14 tolerated(0.08) benign(0.098) TCGA-DX-A3LS-01 9 93606231 93606231 C T SYK Silent p.F17F 0.18 TCGA-DX-A3LS-01 X 30269613 30269613 C T MAGEB1 Missense_Mutation p.R335C 0.18 tolerated(0.09) unknown(0) TCGA-DX-A3LU-01 10 5446755 5446755 T A TUBAL3 Translation_Start_Site p.M1? 0.37 deleterious_low_confidence(0.04) benign(0) TCGA-DX-A3LU-01 11 47186904 47186904 C T ARFGAP2 3'UTR 0.33 TCGA-DX-A3LU-01 11 65429468 65429468 G A RELA Silent p.S42S 0.19 TCGA-DX-A3LU-01 11 73079080 73079080 G A ARHGEF17 3'UTR 0.27 TCGA-DX-A3LU-01 12 25398282 25398282 C A KRAS Missense_Mutation p.G13C 0.09 deleterious(0.02) probably_damaging(0.997) TCGA-DX-A3LU-01 12 54960762 54960762 C T PDE1B Missense_Mutation p.R40C 0.22 deleterious(0) probably_damaging(0.991) TCGA-DX-A3LU-01 12 57869320 57869320 C T ARHGAP9 Missense_Mutation p.E464K 0.80 tolerated(0.06) benign(0.423) TCGA-DX-A3LU-01 12 57960944 57960944 G C KIF5A Missense_Mutation p.E179D 0.16 tolerated(0.11) benign(0.006) TCGA-DX-A3LU-01 12 57960960 57960960 G C KIF5A Missense_Mutation p.D185H 0.14 deleterious(0) benign(0.128) TCGA-DX-A3LU-01 12 57994202 57994202 G A PIP4K2C Silent p.K265K 0.15 TCGA-DX-A3LU-01 12 58216735 58216735 G A CTDSP2 3'UTR 0.13 TCGA-DX-A3LU-01 12 8990042 8990080 CTATGGAAAGCCCATGCTAGGGGCAGTGCAGGTATCTGT - A2ML1 In_Frame_Del p.Y246_V258del 0.32 TCGA-DX-A3LU-01 13 32907514 32907514 T G BRCA2 Missense_Mutation p.N633K 0.11 deleterious(0.05) benign(0.015) TCGA-DX-A3LU-01 13 58209046 58209046 C T PCDH17 Missense_Mutation p.P789L 0.06 deleterious(0.02) benign(0.441) TCGA-DX-A3LU-01 15 59911094 59911094 G A GCNT3 Silent p.P219P 0.30 TCGA-DX-A3LU-01 16 52473155 52473155 C T TOX3 Silent p.S571S 0.19 TCGA-DX-A3LU-01 16 57261275 57261275 G A RSPRY1 Missense_Mutation p.D395N 0.14 deleterious(0) probably_damaging(0.999) TCGA-DX-A3LU-01 17 45388030 45388030 A G ITGB3 3'UTR 0.75 TCGA-DX-A3LU-01 18 47404149 47404149 G A MYO5B Missense_Mutation p.A1127V 0.31 tolerated(0.62) benign(0.003) TCGA-DX-A3LU-01 18 736856 736856 A G YES1 Missense_Mutation p.F415L 0.08 deleterious(0.01) possibly_damaging(0.598) TCGA-DX-A3LU-01 1 15892429 15892429 C T DNAJC16 Silent p.P538P 0.27 TCGA-DX-A3LU-01 1 22418912 22418912 T C CDC42 3'UTR 0.25 TCGA-DX-A3LU-01 1 237551406 237551406 T C RYR2 Silent p.D232D 0.30 TCGA-DX-A3LU-01 1 62672499 62672499 G A L1TD1 Missense_Mutation p.E67K 0.53 tolerated(0.11) unknown(0) TCGA-DX-A3LU-01 1 62672642 62672642 G A L1TD1 Silent p.G114G 0.56 TCGA-DX-A3LU-01 1 62672847 62672847 G A L1TD1 Missense_Mutation p.D183N 0.55 tolerated(0.37) unknown(0) TCGA-DX-A3LU-01 1 62675988 62675988 G A L1TD1 Silent p.L514L 0.51 TCGA-DX-A3LU-01 20 31619530 31619530 T G BPIFB6 Missense_Mutation p.L26W 0.24 deleterious(0) probably_damaging(1) TCGA-DX-A3LU-01 20 44581055 44581055 G A ZNF335 Missense_Mutation p.P974S 0.26 tolerated(0.63) benign(0.001) TCGA-DX-A3LU-01 2 198266600 198266600 A C SF3B1 Missense_Mutation p.F746V 0.10 deleterious(0) probably_damaging(0.992) TCGA-DX-A3LU-01 2 32093492 32093492 G C MEMO1 Missense_Mutation p.Q278E 0.29 tolerated(0.15) benign(0.002) TCGA-DX-A3LU-01 3 14106494 14106494 G A TPRXL 3'UTR 0.26 TCGA-DX-A3LU-01 3 183906580 183906580 G C ABCF3 Missense_Mutation p.E290Q 0.10 tolerated(0.18) benign(0.395) TCGA-DX-A3LU-01 5 154395374 154395374 G A KIF4B Missense_Mutation p.R652H 0.23 tolerated(0.06) benign(0.035) TCGA-DX-A3LU-01 5 79355569 79355569 C T THBS4 Silent p.P276P 0.19 TCGA-DX-A3LU-01 6 36651975 36651975 G A CDKN1A Missense_Mutation p.D33N 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A3LU-01 6 52362244 52362244 G A TRAM2 3'UTR 0.26 TCGA-DX-A3LU-01 6 52362328 52362328 G A TRAM2 3'UTR 0.29 TCGA-DX-A3LU-01 6 52362334 52362334 G A TRAM2 3'UTR 0.29 TCGA-DX-A3LU-01 6 71234525 71234525 A G FAM135A Missense_Mutation p.T580A 0.48 tolerated(0.11) benign(0.341) TCGA-DX-A3LU-01 8 69104676 69104676 G T PREX2 Missense_Mutation p.G1507V 0.21 deleterious(0) probably_damaging(0.999) TCGA-DX-A3LU-01 8 70514037 70514037 G A SULF1 Missense_Mutation p.R345H 0.04 deleterious(0.03) probably_damaging(1) TCGA-DX-A3LU-01 9 125273445 125273445 G A OR1J2 Missense_Mutation p.R122Q 0.45 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DX-A3LU-01 9 386426 386426 G A DOCK8 Silent p.K958K 0.15 TCGA-DX-A3LU-01 9 79326018 79326018 G A PRUNE2 Missense_Mutation p.S391F 0.38 deleterious(0) probably_damaging(0.999) TCGA-DX-A3LU-01 9 96009927 96009927 G A WNK2 Missense_Mutation p.A549T 0.15 unknown(0) TCGA-DX-A3LU-01 X 64959984 64959984 C G MSN 3'UTR 0.38 TCGA-DX-A3LW-01 12 112601934 112601934 C T HECTD4 Missense_Mutation p.R4081Q 0.44 benign(0.053) TCGA-DX-A3LW-01 12 51122461 51122461 G A DIP2B Missense_Mutation p.S1214N 0.54 deleterious(0.03) probably_damaging(0.989) TCGA-DX-A3LW-01 12 56708671 56708671 G C CNPY2 Missense_Mutation p.F56L 0.13 deleterious(0) possibly_damaging(0.829) TCGA-DX-A3LW-01 12 58112180 58112180 G A OS9 Silent p.R462R 0.49 TCGA-DX-A3LW-01 12 58166903 58166903 C T METTL21B Missense_Mutation p.A94V 0.16 tolerated(0.33) benign(0.157) TCGA-DX-A3LW-01 12 65449811 65449811 G A WIF1 Missense_Mutation p.P308S 0.50 tolerated(1) benign(0.003) TCGA-DX-A3LW-01 14 104638995 104638995 C A KIF26A Missense_Mutation p.H470Q 0.16 tolerated(0.14) benign(0.193) TCGA-DX-A3LW-01 15 75722672 75722672 G A SIN3A Silent p.A15A 0.55 TCGA-DX-A3LW-01 16 66756187 66756187 C T DYNC1LI2 3'UTR 0.39 TCGA-DX-A3LW-01 16 69974022 69974022 G T WWP2 3'UTR 0.44 TCGA-DX-A3LW-01 16 81232286 81232286 G A PKD1L2 Silent p.R36R 0.42 TCGA-DX-A3LW-01 1 120056737 120056737 C T HSD3B1 Silent p.F197F 0.38 TCGA-DX-A3LW-01 1 145522894 145522894 A G PEX11B Missense_Mutation p.Y252C 0.50 tolerated(0.26) benign(0) TCGA-DX-A3LW-01 1 152275633 152275633 G T FLG Missense_Mutation p.A3910D 0.45 unknown(0) TCGA-DX-A3LW-01 1 175348774 175348774 A C TNR Missense_Mutation p.V626G 0.25 deleterious(0) probably_damaging(0.972) TCGA-DX-A3LW-01 1 23111560 23111560 G A EPHB2 Missense_Mutation p.V268I 0.77 tolerated(0.32) benign(0.014) TCGA-DX-A3LW-01 1 85787222 85787222 C G DDAH1 Silent p.L257L 0.16 TCGA-DX-A3LW-01 22 28494998 28494998 C T TTC28 Missense_Mutation p.R1151Q 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A3LW-01 22 30857444 30857444 C T SEC14L3 Missense_Mutation p.A312T 0.27 tolerated(0.06) benign(0.008) TCGA-DX-A3LW-01 2 113785508 113785508 G T IL36B Intron 0.19 TCGA-DX-A3LW-01 2 11780503 11780503 C T GREB1 Missense_Mutation p.R1925W 0.46 deleterious(0) probably_damaging(1) TCGA-DX-A3LW-01 2 206608046 206608046 C T NRP2 Missense_Mutation p.R471C 0.17 deleterious(0) probably_damaging(0.951) TCGA-DX-A3LW-01 2 217234774 217234774 G A MARCH4 Silent p.P70P 0.50 TCGA-DX-A3LW-01 2 242142760 242142760 A T ANO7 Missense_Mutation p.T300S 0.09 tolerated(0.72) benign(0.002) TCGA-DX-A3LW-01 3 134339675 134339675 C T KY Missense_Mutation p.E170K 0.38 tolerated(0.08) benign(0.284) TCGA-DX-A3LW-01 4 25849000 25849000 C T SEL1L3 Missense_Mutation p.D217N 0.03 tolerated(0.22) possibly_damaging(0.839) TCGA-DX-A3LW-01 4 40356596 40356596 C T CHRNA9 3'UTR 0.14 TCGA-DX-A3LW-01 5 10992682 10992682 C T CTNND2 Silent p.V1064V 0.14 TCGA-DX-A3LW-01 5 44809273 44809273 T G MRPS30 Missense_Mutation p.V70G 0.28 deleterious(0) probably_damaging(0.921) TCGA-DX-A3LW-01 6 154412167 154412167 G A OPRM1 Missense_Mutation p.A335T 0.32 deleterious(0) probably_damaging(0.999) TCGA-DX-A3LW-01 6 20493757 20493757 C G E2F3 3'UTR 0.17 TCGA-DX-A3LW-01 6 20781386 20781386 G C CDKAL1 Silent p.V176V 0.67 TCGA-DX-A3LW-01 6 30114900 30114900 G A TRIM40 Missense_Mutation p.D165N 0.14 tolerated(0.33) benign(0.003) TCGA-DX-A3LW-01 6 37299312 37299312 G T TBC1D22B 3'UTR 0.29 TCGA-DX-A3LW-01 7 124404542 124404542 C A GPR37 Silent p.G163G 0.42 TCGA-DX-A3LW-01 8 30938397 30938397 T G WRN Missense_Mutation p.L285R 0.46 deleterious(0) probably_damaging(0.98) TCGA-DX-A3LW-01 X 9915068 9915068 G A SHROOM2 3'UTR 0.89 TCGA-DX-A3LY-01 10 90694720 90694720 C T ACTA2 3'Flank 0.59 TCGA-DX-A3LY-01 10 92672521 92672521 G A ANKRD1 3'UTR 0.39 TCGA-DX-A3LY-01 11 102573792 102573792 T A MMP27 Missense_Mutation p.E133D 0.32 deleterious(0) benign(0.08) TCGA-DX-A3LY-01 11 113673997 113673997 T C USP28 Silent p.Q915Q 0.17 TCGA-DX-A3LY-01 11 115375068 115375068 T G CADM1 Silent p.A15A 0.19 TCGA-DX-A3LY-01 11 36596275 36596275 G A RAG1 Missense_Mutation p.R474H 0.41 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-DX-A3LY-01 11 44074988 44074988 C A ACCSL Missense_Mutation p.N327K 0.36 deleterious(0) probably_damaging(0.965) TCGA-DX-A3LY-01 11 56431448 56431448 G C OR5AR1 Missense_Mutation p.S96T 0.28 deleterious(0.01) benign(0.395) TCGA-DX-A3LY-01 11 7670079 7670079 G - PPFIBP2 Frame_Shift_Del p.V616* 0.39 TCGA-DX-A3LY-01 12 1943689 1943689 G A LRTM2 Silent p.R305R 0.47 TCGA-DX-A3LY-01 12 52389495 52389495 G C ACVR1B 3'Flank 0.14 TCGA-DX-A3LY-01 12 52389626 52389626 G C ACVR1B 3'Flank 0.12 TCGA-DX-A3LY-01 12 52390694 52390694 G A ACVR1B 3'Flank 0.16 TCGA-DX-A3LY-01 12 52390788 52390788 G C ACVR1B 3'Flank 0.14 TCGA-DX-A3LY-01 12 53237971 53237971 T A KRT78 Missense_Mutation p.H318L 0.21 deleterious(0) possibly_damaging(0.725) TCGA-DX-A3LY-01 12 53292604 53292604 G T KRT8 Missense_Mutation p.S382Y 0.25 deleterious(0) benign(0.02) TCGA-DX-A3LY-01 12 56618538 56618538 G A NABP2 5'UTR 0.48 TCGA-DX-A3LY-01 12 56618713 56618713 G A NABP2 Missense_Mutation p.E25K 0.58 deleterious(0) possibly_damaging(0.579) TCGA-DX-A3LY-01 12 56618715 56618715 G A NABP2 Silent p.E25E 0.56 TCGA-DX-A3LY-01 12 58164954 58164954 G - METTL1 Frame_Shift_Del p.P66Qfs*18 0.15 TCGA-DX-A3LY-01 12 76844700 76844700 C G OSBPL8 Missense_Mutation p.E50Q 0.75 deleterious_low_confidence(0.02) benign(0.272) TCGA-DX-A3LY-01 12 76844722 76844722 C G OSBPL8 Missense_Mutation p.K42N 0.75 deleterious_low_confidence(0.01) benign(0.261) TCGA-DX-A3LY-01 14 104640551 104640551 C T KIF26A Silent p.I699I 0.36 TCGA-DX-A3LY-01 16 27509985 27509985 G A GTF3C1 Missense_Mutation p.R711C 0.14 deleterious(0) probably_damaging(1) TCGA-DX-A3LY-01 16 77325207 77325207 C A ADAMTS18 Missense_Mutation p.V1120L 0.22 tolerated(0.91) benign(0.001) TCGA-DX-A3LY-01 17 20000011 20000011 G A SPECC1 Missense_Mutation p.G16D 0.34 deleterious(0.05) benign(0.044) TCGA-DX-A3LY-01 17 76113990 76113990 C T TMC6 Silent p.A638A 0.46 TCGA-DX-A3LY-01 18 24918656 24918656 A G RP11-739N10.1 RNA 0.44 TCGA-DX-A3LY-01 18 30275505 30275505 G T KLHL14 Nonsense_Mutation p.Y360* 0.16 TCGA-DX-A3LY-01 19 16035666 16035666 C G CYP4F11 Missense_Mutation p.E184D 0.26 tolerated(0.16) benign(0.008) TCGA-DX-A3LY-01 1 176525573 176525573 C A PAPPA2 Missense_Mutation p.H39N 0.13 tolerated_low_confidence(0.2) benign(0.081) TCGA-DX-A3LY-01 1 190067649 190067649 C A BRINP3 Missense_Mutation p.K600N 0.20 tolerated(0.71) benign(0.001) TCGA-DX-A3LY-01 1 245005524 245005524 G C COX20 Missense_Mutation p.G62A 0.10 tolerated(0.25) benign(0.341) TCGA-DX-A3LY-01 1 36316471 36316471 C A AGO4 Nonsense_Mutation p.S765* 0.10 TCGA-DX-A3LY-01 1 36316629 36316629 C A AGO4 Missense_Mutation p.H818N 0.11 deleterious(0.01) probably_damaging(0.995) TCGA-DX-A3LY-01 1 52889595 52889595 A T ZCCHC11 3'UTR 0.33 TCGA-DX-A3LY-01 1 76877795 76877795 A G ST6GALNAC3 Missense_Mutation p.R106G 0.43 probably_damaging(0.988) TCGA-DX-A3LY-01 1 7723936 7723936 C T CAMTA1 Silent p.A443A 0.25 TCGA-DX-A3LY-01 20 62724133 62724133 C A OPRL1 Silent p.G20G 0.07 TCGA-DX-A3LY-01 22 23626245 23626245 G T BCR Missense_Mutation p.D733Y 0.43 deleterious(0) probably_damaging(0.979) TCGA-DX-A3LY-01 22 26747191 26747191 C T SEZ6L Missense_Mutation p.R861C 0.38 deleterious(0) possibly_damaging(0.896) TCGA-DX-A3LY-01 22 33700372 33700372 T A LARGE Missense_Mutation p.S525C 0.22 deleterious(0.04) probably_damaging(0.935) TCGA-DX-A3LY-01 22 39925379 39925379 G A RPS19BP1 3'UTR 0.32 TCGA-DX-A3LY-01 22 44328825 44328825 C - PNPLA3 Frame_Shift_Del p.F187Sfs*76 0.31 TCGA-DX-A3LY-01 2 136575110 136575110 G A LCT Missense_Mutation p.A503V 0.14 tolerated(0.11) possibly_damaging(0.483) TCGA-DX-A3LY-01 2 167760312 167760312 T C XIRP2 Missense_Mutation p.I107T 0.17 probably_damaging(0.921) TCGA-DX-A3LY-01 2 210795724 210795724 C G UNC80 Silent p.L1914L 0.57 TCGA-DX-A3LY-01 2 238667417 238667417 C G LRRFIP1 Intron 0.36 TCGA-DX-A3LY-01 2 27599044 27599044 C T SNX17 Silent p.I392I 0.21 TCGA-DX-A3LY-01 2 27599243 27599243 C T SNX17 Missense_Mutation p.P416S 0.19 tolerated(0.54) benign(0.012) TCGA-DX-A3LY-01 2 30381844 30381844 A C YPEL5 3'UTR 0.20 TCGA-DX-A3LY-01 2 88327569 88327569 C A KRCC1 Nonsense_Mutation p.E172* 0.09 TCGA-DX-A3LY-01 2 9496213 9496213 G A ASAP2 Silent p.Q383Q 0.19 TCGA-DX-A3LY-01 3 167249026 167249026 G A WDR49 Missense_Mutation p.P347S 0.06 tolerated(1) benign(0) TCGA-DX-A3LY-01 3 19575940 19575940 G T KCNH8 3'UTR 0.36 TCGA-DX-A3LY-01 4 101368702 101368702 T C EMCN Missense_Mutation p.T135A 0.30 tolerated(0.05) possibly_damaging(0.874) TCGA-DX-A3LY-01 4 106158294 106158294 G T TET2 Missense_Mutation p.L1065F 0.33 deleterious(0.01) benign(0.259) TCGA-DX-A3LY-01 4 164393216 164393216 G T TKTL2 Silent p.G557G 0.50 TCGA-DX-A3LY-01 5 137801710 137801710 A C EGR1 Missense_Mutation p.N87T 0.18 tolerated(0.15) unknown(0) TCGA-DX-A3LY-01 5 175798722 175798722 C G ARL10 Intron 0.37 TCGA-DX-A3LY-01 5 178199430 178199430 C T AACSP1 Intron 0.06 TCGA-DX-A3LY-01 5 179195930 179195930 G A MAML1 Missense_Mutation p.S604N 0.23 tolerated(0.14) benign(0.003) TCGA-DX-A3LY-01 5 179196021 179196021 G A MAML1 Silent p.R634R 0.19 TCGA-DX-A3LY-01 5 179196072 179196072 G A MAML1 Silent p.Q651Q 0.17 TCGA-DX-A3LY-01 5 32248179 32248179 A T MTMR12 Missense_Mutation p.L317Q 0.57 deleterious(0) probably_damaging(0.945) TCGA-DX-A3LY-01 6 101247339 101247339 T C ASCC3 Missense_Mutation p.M413V 0.34 tolerated(0.17) benign(0.007) TCGA-DX-A3LY-01 6 121770660 121770660 T C GJA1 3'UTR 0.19 TCGA-DX-A3LY-01 6 129687471 129687471 C A LAMA2 Missense_Mutation p.L1609M 0.09 deleterious(0.02) probably_damaging(1) TCGA-DX-A3LY-01 7 141427061 141427061 T G WEE2 Intron 0.51 TCGA-DX-A3LY-01 8 102680506 102680506 A C GRHL2 3'UTR 0.35 TCGA-DX-A3LY-01 8 92407428 92407428 C G SLC26A7 3'Flank 0.18 TCGA-DX-A3LY-01 9 32634701 32634701 G T TAF1L Missense_Mutation p.Q293K 0.21 tolerated(0.87) benign(0.044) TCGA-DX-A3LY-01 X 100646802 100646802 C T RPL36A-HNRNPH2 Missense_Mutation p.R68W 0.64 tolerated_low_confidence(0.3) benign(0.021) TCGA-DX-A3LY-01 X 101820660 101820660 C T NXF4 RNA 0.56 TCGA-DX-A3LY-01 X 153276177 153276177 C T IRAK1 3'UTR 0.17 TCGA-DX-A3LY-01 X 17751898 17751898 C T NHS 3'UTR 0.29 TCGA-DX-A3LY-01 X 74641738 74641738 C G ZDHHC15 Missense_Mutation p.G275A 0.19 deleterious(0) probably_damaging(0.998) TCGA-DX-A3LY-01 X 78011794 78011794 C A LPAR4 3'UTR 0.36 TCGA-DX-A3M1-01 11 118513072 118513072 C G PHLDB1 Missense_Mutation p.S946C 0.60 tolerated(0.34) benign(0.293) TCGA-DX-A3M1-01 11 130319823 130319823 C T ADAMTS15 Nonsense_Mutation p.Q319* 0.66 TCGA-DX-A3M1-01 11 35006133 35006133 A G PDHX Missense_Mutation p.N347S 0.38 deleterious(0) probably_damaging(0.997) TCGA-DX-A3M1-01 11 70331623 70331623 C A SHANK2 Missense_Mutation p.G1593V 0.37 tolerated(0.11) probably_damaging(0.953) TCGA-DX-A3M1-01 11 73441811 73441811 T A RAB6A Missense_Mutation p.Q43L 0.49 deleterious(0) benign(0.063) TCGA-DX-A3M1-01 11 93819313 93819313 C T HEPHL1 Missense_Mutation p.P680S 0.56 deleterious(0.01) probably_damaging(1) TCGA-DX-A3M1-01 11 93819316 93819316 C G HEPHL1 Missense_Mutation p.H681D 0.58 deleterious(0) probably_damaging(0.995) TCGA-DX-A3M1-01 11 93819353 93819353 C T HEPHL1 Missense_Mutation p.A693V 0.63 tolerated(0.29) benign(0.004) TCGA-DX-A3M1-01 12 104106208 104106208 G A STAB2 Silent p.G1466G 0.05 TCGA-DX-A3M1-01 12 106751614 106751614 C T POLR3B 5'UTR 0.47 TCGA-DX-A3M1-01 12 113407885 113407885 G A OAS3 3'UTR 0.56 TCGA-DX-A3M1-01 12 23686145 23686145 C G SOX5 3'UTR 0.23 TCGA-DX-A3M1-01 12 39745740 39745740 T C KIF21A Silent p.R504R 0.45 TCGA-DX-A3M1-01 12 5154464 5154464 G T KCNA5 Missense_Mutation p.G384V 0.22 tolerated(0.1) benign(0.025) TCGA-DX-A3M1-01 12 58135878 58135878 G A AGAP2 5'Flank 0.15 TCGA-DX-A3M1-01 12 66357328 66357328 G A HMGA2 3'UTR 0.90 TCGA-DX-A3M1-01 12 69222689 69222689 C G MDM2 Missense_Mutation p.S221C 0.09 deleterious(0) probably_damaging(0.994) TCGA-DX-A3M1-01 12 72026677 72026677 C A ZFC3H1 Missense_Mutation p.D936Y 0.13 deleterious(0.02) benign(0.312) TCGA-DX-A3M1-01 12 88508221 88508221 G A CEP290 Silent p.I676I 0.51 TCGA-DX-A3M1-01 12 88508231 88508231 G A CEP290 Missense_Mutation p.S673F 0.51 benign(0.006) TCGA-DX-A3M1-01 12 88508256 88508256 G A CEP290 Missense_Mutation p.P665S 0.54 benign(0.005) TCGA-DX-A3M1-01 12 88509293 88509293 C T CEP290 Intron 0.61 TCGA-DX-A3M1-01 12 88509296 88509296 C T CEP290 Intron 0.62 TCGA-DX-A3M1-01 12 88509321 88509321 C T CEP290 Intron 0.64 TCGA-DX-A3M1-01 12 98850417 98850417 G A SLC9A7P1 RNA 0.03 TCGA-DX-A3M1-01 12 98993839 98993839 C T SLC25A3 Missense_Mutation p.P251S 0.86 deleterious(0.03) benign(0.133) TCGA-DX-A3M1-01 15 35189162 35189162 G A AQR Missense_Mutation p.T799M 0.44 tolerated(0.1) benign(0.029) TCGA-DX-A3M1-01 15 39910342 39910342 C A FSIP1 Missense_Mutation p.K431N 0.47 tolerated(1) benign(0.001) TCGA-DX-A3M1-01 15 84651157 84651157 C T ADAMTSL3 Missense_Mutation p.P926L 0.13 deleterious(0.03) possibly_damaging(0.489) TCGA-DX-A3M1-01 16 69199930 69199930 G A CIRH1A Intron 0.24 TCGA-DX-A3M1-01 17 10533632 10533632 C T MYH3 Silent p.K1810K 0.51 TCGA-DX-A3M1-01 17 10537376 10537376 C G MYH3 Missense_Mutation p.D1494H 0.70 deleterious(0) possibly_damaging(0.697) TCGA-DX-A3M1-01 17 10539137 10539137 C G MYH3 Missense_Mutation p.S1297T 0.53 tolerated(0.17) benign(0.001) TCGA-DX-A3M1-01 17 1629551 1629551 A G WDR81 Missense_Mutation p.E433G 0.19 deleterious(0.04) possibly_damaging(0.506) TCGA-DX-A3M1-01 17 1962885 1962885 C T HIC1 3'UTR 0.60 TCGA-DX-A3M1-01 17 26603750 26603750 T A AC061975.8 5'Flank 0.26 TCGA-DX-A3M1-01 17 3436043 3436043 G C TRPV3 Missense_Mutation p.L325V 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-DX-A3M1-01 17 39261912 39261912 G C KRTAP4-9 Missense_Mutation p.R91T 0.33 deleterious(0.03) unknown(0) TCGA-DX-A3M1-01 17 39974736 39974736 G A FKBP10 Silent p.K228K 0.17 TCGA-DX-A3M1-01 17 40342652 40342652 G A GHDC Silent p.S426S 0.11 TCGA-DX-A3M1-01 17 42635515 42635515 G A FZD2 Silent p.Q153Q 0.16 TCGA-DX-A3M1-01 17 42635714 42635714 G A FZD2 Missense_Mutation p.D220N 0.13 tolerated(0.86) benign(0.005) TCGA-DX-A3M1-01 17 42635747 42635747 G A FZD2 Missense_Mutation p.D231N 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-DX-A3M1-01 17 42636675 42636675 G C FZD2 Missense_Mutation p.W540S 0.19 deleterious(0) probably_damaging(0.982) TCGA-DX-A3M1-01 17 7640498 7640498 G A DNAH2 Silent p.L364L 0.50 TCGA-DX-A3M1-01 17 7642332 7642332 G C DNAH2 Intron 0.41 TCGA-DX-A3M1-01 18 50592510 50592510 G T DCC Missense_Mutation p.S412I 0.26 deleterious(0.03) possibly_damaging(0.545) TCGA-DX-A3M1-01 19 3019293 3019293 C T TLE2 Missense_Mutation p.E180K 0.30 tolerated(0.19) benign(0.004) TCGA-DX-A3M1-01 19 34934804 34934804 C A UBA2 Missense_Mutation p.P213T 0.05 deleterious(0.01) benign(0.052) TCGA-DX-A3M1-01 19 36365487 36365487 G A APLP1 Missense_Mutation p.V380I 0.26 deleterious(0.03) probably_damaging(0.985) TCGA-DX-A3M1-01 19 3759868 3759868 A C APBA3 Missense_Mutation p.L132R 0.39 tolerated(0.64) benign(0.059) TCGA-DX-A3M1-01 19 42133313 42133313 C T CEACAM4 Missense_Mutation p.A7T 0.49 tolerated(0.12) benign(0.022) TCGA-DX-A3M1-01 19 53342892 53342892 G A ZNF468 3'UTR 0.12 TCGA-DX-A3M1-01 19 57334999 57334999 C A PEG3 Missense_Mutation p.R148I 0.11 tolerated(0.09) benign(0.014) TCGA-DX-A3M1-01 1 117122058 117122058 G A IGSF3 Missense_Mutation p.T1117M 0.51 deleterious(0.01) possibly_damaging(0.587) TCGA-DX-A3M1-01 1 118412824 118412824 C G GDAP2 3'UTR 0.29 TCGA-DX-A3M1-01 1 196743977 196743977 C T CFHR3 5'UTR 0.10 TCGA-DX-A3M1-01 1 225490904 225490904 G T DNAH14 Missense_Mutation p.G2147V 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A3M1-01 1 26691499 26691499 A T ZNF683 Missense_Mutation p.S180T 0.37 deleterious(0.03) benign(0.095) TCGA-DX-A3M1-01 1 37271806 37271806 A G GRIK3 Missense_Mutation p.M738T 0.39 deleterious(0.01) benign(0.151) TCGA-DX-A3M1-01 1 84878060 84878060 C T DNASE2B Silent p.N192N 0.46 TCGA-DX-A3M1-01 20 56140443 56140443 C A PCK1 Silent p.P484P 0.07 TCGA-DX-A3M1-01 21 48084213 48084214 - AA PRMT2 Frame_Shift_Ins p.V428Kfs*10 0.11 TCGA-DX-A3M1-01 22 41794998 41794998 G A TEF 3'UTR 0.41 TCGA-DX-A3M1-01 22 41794999 41794999 G C TEF 3'UTR 0.39 TCGA-DX-A3M1-01 22 41795066 41795066 G A TEF 3'UTR 0.37 TCGA-DX-A3M1-01 22 46611070 46611070 A G PPARA Missense_Mutation p.D70G 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.488) TCGA-DX-A3M1-01 2 102493602 102493602 A G MAP4K4 Missense_Mutation p.I982V 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.745) TCGA-DX-A3M1-01 2 166912969 166912969 C T SCN1A Missense_Mutation p.C142Y 0.63 deleterious(0) benign(0.092) TCGA-DX-A3M1-01 2 220136293 220136293 T C TUBA4B RNA 0.05 TCGA-DX-A3M1-01 2 234652338 234652338 G A UGT1A10 Intron 0.70 TCGA-DX-A3M1-01 2 32417472 32417472 A C SLC30A6 Missense_Mutation p.I158L 0.47 tolerated(0.37) benign(0.003) TCGA-DX-A3M1-01 2 85361195 85361195 C T TCF7L1 Silent p.F102F 0.27 TCGA-DX-A3M1-01 3 1445183 1445183 G T CNTN6 3'UTR 0.27 TCGA-DX-A3M1-01 3 156867129 156867129 A C CCNL1 Missense_Mutation p.S393R 0.40 tolerated(0.12) probably_damaging(0.944) TCGA-DX-A3M1-01 3 38601888 38601888 G A SCN5A Missense_Mutation p.P1332L 0.13 deleterious(0) probably_damaging(1) TCGA-DX-A3M1-01 3 48603732 48603732 C - COL7A1 Frame_Shift_Del p.G2792Afs*7 0.30 TCGA-DX-A3M1-01 3 9972614 9972614 C A IL17RC Nonsense_Mutation p.C529* 0.24 TCGA-DX-A3M1-01 4 145573925 145573925 T C HHIP Missense_Mutation p.Y150H 0.41 tolerated(0.31) probably_damaging(0.917) TCGA-DX-A3M1-01 5 140553993 140553993 C T PCDHB7 Missense_Mutation p.A526V 0.20 tolerated_low_confidence(0.05) benign(0.072) TCGA-DX-A3M1-01 5 176072451 176072451 C T EIF4E1B Missense_Mutation p.T183I 0.06 tolerated(0.09) possibly_damaging(0.899) TCGA-DX-A3M1-01 5 178585787 178585787 C T ADAMTS2 Missense_Mutation p.D357N 0.06 tolerated(0.09) benign(0.41) TCGA-DX-A3M1-01 6 116973247 116973247 C T ZUFSP Missense_Mutation p.G357D 0.65 deleterious(0) possibly_damaging(0.618) TCGA-DX-A3M1-01 6 137015432 137015432 C T MAP3K5 Missense_Mutation p.D367N 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-DX-A3M1-01 6 139487930 139487930 G A HECA Missense_Mutation p.G261S 0.56 tolerated(0.18) benign(0.008) TCGA-DX-A3M1-01 6 27279851 27279851 C A POM121L2 Missense_Mutation p.Q33H 0.35 tolerated(0.08) probably_damaging(0.964) TCGA-DX-A3M1-01 6 88125496 88125496 G C C6ORF165 Missense_Mutation p.E126Q 0.73 deleterious(0.03) probably_damaging(0.961) TCGA-DX-A3M1-01 7 140255494 140255494 C T DENND2A Missense_Mutation p.R660H 0.09 deleterious(0) probably_damaging(0.995) TCGA-DX-A3M1-01 7 21550667 21550667 G A SP4 Missense_Mutation p.C712Y 0.08 deleterious(0.05) probably_damaging(0.999) TCGA-DX-A3M1-01 7 23214425 23214425 C T KLHL7 3'UTR 0.16 TCGA-DX-A3M1-01 7 71571178 71571178 C T CALN1 Missense_Mutation p.E116K 0.36 deleterious(0.02) benign(0.32) TCGA-DX-A3M1-01 8 117783742 117783742 C T UTP23 Silent p.L137L 0.36 TCGA-DX-A3M1-01 8 20110991 20110991 G C LZTS1 Missense_Mutation p.P151A 0.39 tolerated(0.39) benign(0.101) TCGA-DX-A3M1-01 9 33443824 33443824 T C AQP3 Missense_Mutation p.I59V 0.31 tolerated(0.93) benign(0.007) TCGA-DX-A3M1-01 9 77249620 77249620 G A RORB Missense_Mutation p.R56K 0.39 deleterious(0) probably_damaging(1) TCGA-DX-A3M1-01 X 72667297 72667297 G A CDX4 Missense_Mutation p.G70R 0.61 deleterious(0) possibly_damaging(0.881) TCGA-DX-A3M1-01 X 9863093 9863093 C T SHROOM2 Missense_Mutation p.S382L 0.28 tolerated(0.31) benign(0.002) TCGA-DX-A3M2-01 10 134981792 134981792 C T KNDC1 Silent p.F112F 0.29 TCGA-DX-A3M2-01 10 135061123 135061123 C T MIR202HG Intron 0.25 TCGA-DX-A3M2-01 10 135270925 135270925 C T SPRN Intron 0.31 TCGA-DX-A3M2-01 10 18874941 18874941 T A NSUN6 Missense_Mutation p.I287F 0.10 deleterious(0) probably_damaging(0.988) TCGA-DX-A3M2-01 10 49944117 49944117 T A WDFY4 Splice_Site p.X626_splice 0.20 TCGA-DX-A3M2-01 10 5567614 5567614 G A CALML3 3'UTR 0.14 TCGA-DX-A3M2-01 10 96282101 96282101 A T TBC1D12 Missense_Mutation p.M631L 0.11 deleterious(0.03) benign(0.173) TCGA-DX-A3M2-01 11 120989346 120989346 C T TECTA Silent p.A374A 0.14 TCGA-DX-A3M2-01 11 12231105 12231105 C T MICAL2 Silent p.D217D 0.09 TCGA-DX-A3M2-01 11 55872648 55872648 G A OR8H2 Missense_Mutation p.V44M 0.15 tolerated(0.15) benign(0.009) TCGA-DX-A3M2-01 11 56057792 56057792 G T OR8H1 Silent p.I249I 0.21 TCGA-DX-A3M2-01 11 58894301 58894301 T A FAM111B 3'UTR 0.32 TCGA-DX-A3M2-01 11 62553797 62553797 T A TAF6L Missense_Mutation p.D342E 0.12 tolerated(0.42) benign(0.057) TCGA-DX-A3M2-01 11 64332709 64332709 G A SLC22A11 Missense_Mutation p.V320M 0.05 tolerated(1) benign(0) TCGA-DX-A3M2-01 11 8123044 8123044 G A TUB Missense_Mutation p.V522M 0.10 deleterious(0) probably_damaging(0.936) TCGA-DX-A3M2-01 11 86133777 86133777 C T CCDC81 3'UTR 0.16 TCGA-DX-A3M2-01 12 10339077 10339077 C G TMEM52B Missense_Mutation p.R46G 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A3M2-01 12 109698439 109698439 A T ACACB Missense_Mutation p.E2217D 0.11 deleterious(0) probably_damaging(0.998) TCGA-DX-A3M2-01 12 111322003 111322003 G A CCDC63 Silent p.T341T 0.11 TCGA-DX-A3M2-01 12 120172048 120172048 C T CIT Missense_Mutation p.V1091I 0.12 tolerated(0.11) benign(0.003) TCGA-DX-A3M2-01 12 2800254 2800254 C T CACNA1C Silent p.D2150D 0.07 TCGA-DX-A3M2-01 12 50367325 50367325 G A AQP6 Silent p.P123P 0.29 TCGA-DX-A3M2-01 12 52867478 52867478 C T KRT6C Missense_Mutation p.R15H 0.28 tolerated(0.29) unknown(0) TCGA-DX-A3M2-01 12 56221844 56221844 C T DNAJC14 Missense_Mutation p.R200H 0.12 tolerated(0.1) benign(0.009) TCGA-DX-A3M2-01 12 56625110 56625110 G A SLC39A5 Missense_Mutation p.V18I 0.09 tolerated_low_confidence(0.36) benign(0.001) TCGA-DX-A3M2-01 12 6567949 6567949 C G TAPBPL Missense_Mutation p.S348C 0.14 deleterious(0) probably_damaging(0.976) TCGA-DX-A3M2-01 12 7882204 7882204 C A CLEC4C Missense_Mutation p.K210N 0.06 deleterious(0.01) benign(0.411) TCGA-DX-A3M2-01 12 91363850 91363850 G A EPYC Missense_Mutation p.P257S 0.14 deleterious(0) probably_damaging(0.957) TCGA-DX-A3M2-01 13 72013469 72013469 C T DACH1 3'UTR 0.17 TCGA-DX-A3M2-01 14 104565230 104565230 G A ASPG Missense_Mutation p.R185Q 0.08 deleterious(0.03) probably_damaging(0.98) TCGA-DX-A3M2-01 14 106307269 106307269 G A IGHD Missense_Mutation p.P257L 0.08 tolerated(0.29) benign(0.254) TCGA-DX-A3M2-01 14 106307295 106307295 G A IGHD Silent p.T248T 0.07 TCGA-DX-A3M2-01 15 101605774 101605774 C T LRRK1 Missense_Mutation p.P1711L 0.12 deleterious(0) probably_damaging(1) TCGA-DX-A3M2-01 15 23060834 23060834 C T NIPA1 Missense_Mutation p.A100T 0.07 deleterious(0.02) possibly_damaging(0.881) TCGA-DX-A3M2-01 15 34651485 34651489 GAGAA - LPCAT4 Frame_Shift_Del p.F472Pfs*3 0.25 TCGA-DX-A3M2-01 15 38641674 38641674 G A SPRED1 Missense_Mutation p.V212I 0.18 tolerated(0.59) benign(0.001) TCGA-DX-A3M2-01 15 40313150 40313150 T C EIF2AK4 Silent p.S1408S 0.07 TCGA-DX-A3M2-01 15 48057167 48057167 G T SEMA6D Missense_Mutation p.M447I 0.16 tolerated(0.61) benign(0) TCGA-DX-A3M2-01 15 63097816 63097816 C T TLN2 Silent p.D2165D 0.13 TCGA-DX-A3M2-01 15 79589645 79589645 C T ANKRD34C 3'UTR 0.22 TCGA-DX-A3M2-01 15 91827281 91827281 G A SV2B Missense_Mutation p.R513Q 0.12 tolerated(0.09) benign(0.025) TCGA-DX-A3M2-01 16 46943614 46943614 G A GPT2 Missense_Mutation p.V199I 0.19 tolerated(0.47) benign(0.018) TCGA-DX-A3M2-01 16 50321983 50321983 G A ADCY7 5'UTR 0.09 TCGA-DX-A3M2-01 16 86371004 86371004 G A LINC00917 RNA 0.19 TCGA-DX-A3M2-01 16 88666217 88666217 A G ZC3H18 Missense_Mutation p.I317V 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-DX-A3M2-01 17 16699397 16699397 C T CCDC144A 3'UTR 0.06 TCGA-DX-A3M2-01 17 18023186 18023186 C A MYO15A Missense_Mutation p.L358I 0.13 benign(0.307) TCGA-DX-A3M2-01 17 26603970 26603970 C T AC061975.8 5'Flank 0.27 TCGA-DX-A3M2-01 17 36883244 36883244 C T MLLT6 3'UTR 0.19 TCGA-DX-A3M2-01 17 39635725 39635725 C T KRT35 Silent p.L195L 0.12 TCGA-DX-A3M2-01 17 48562112 48562112 C T RSAD1 Missense_Mutation p.R407W 0.10 deleterious(0) probably_damaging(1) TCGA-DX-A3M2-01 17 71348609 71348609 T C SDK2 Intron 0.18 TCGA-DX-A3M2-01 17 73096768 73096768 C T SLC16A5 Missense_Mutation p.A337V 0.24 tolerated(1) benign(0.002) TCGA-DX-A3M2-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.47 deleterious(0) probably_damaging(0.997) TCGA-DX-A3M2-01 18 40850433 40850433 C T SYT4 Missense_Mutation p.R384Q 0.09 deleterious(0.01) benign(0.002) TCGA-DX-A3M2-01 18 44102227 44102227 G A LOXHD1 Missense_Mutation p.A530V 0.14 deleterious(0.01) probably_damaging(0.938) TCGA-DX-A3M2-01 19 1383593 1383593 G A NDUFS7 5'Flank 0.36 TCGA-DX-A3M2-01 19 17881351 17881351 C T FCHO1 Missense_Mutation p.R152W 0.11 deleterious(0) possibly_damaging(0.808) TCGA-DX-A3M2-01 19 21132245 21132245 A G ZNF85 Missense_Mutation p.T309A 0.45 tolerated(0.12) benign(0.007) TCGA-DX-A3M2-01 19 33355561 33355561 G A SLC7A9 Missense_Mutation p.A70V 0.15 tolerated(0.16) benign(0.02) TCGA-DX-A3M2-01 19 35550828 35550828 C T HPN Missense_Mutation p.T114M 0.24 deleterious(0.01) probably_damaging(0.96) TCGA-DX-A3M2-01 19 36430325 36430325 G A LRFN3 5'UTR 0.23 TCGA-DX-A3M2-01 19 38380902 38380902 G A WDR87 Missense_Mutation p.R1098W 0.24 probably_damaging(0.995) TCGA-DX-A3M2-01 19 41025405 41025405 G A SPTBN4 Missense_Mutation p.A1001T 0.14 tolerated(0.42) benign(0.001) TCGA-DX-A3M2-01 19 42744317 42744317 G A GSK3A Intron 0.11 TCGA-DX-A3M2-01 19 49129289 49129289 C T SPHK2 Nonsense_Mutation p.R61* 0.21 TCGA-DX-A3M2-01 19 50150007 50150007 G A SCAF1 Missense_Mutation p.R133Q 0.13 unknown(0) TCGA-DX-A3M2-01 19 52002731 52002731 C T SIGLEC12 Missense_Mutation p.G350S 0.09 tolerated(0.18) benign(0.102) TCGA-DX-A3M2-01 19 54403679 54403679 C T PRKCG Silent p.Y460Y 0.20 TCGA-DX-A3M2-01 19 54515432 54515432 C T CACNG6 Missense_Mutation p.R258W 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.513) TCGA-DX-A3M2-01 19 58564938 58564938 G A ZSCAN1 Missense_Mutation p.R249Q 0.19 tolerated(0.74) benign(0.003) TCGA-DX-A3M2-01 19 7808072 7808072 G A CD209 Silent p.C356C 0.20 TCGA-DX-A3M2-01 19 9213641 9213641 C T OR7G2 Silent p.T114T 0.23 TCGA-DX-A3M2-01 1 110714771 110714771 C T SLC6A17 Missense_Mutation p.R126C 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A3M2-01 1 116247891 116247891 G T CASQ2 Silent p.I287I 0.24 TCGA-DX-A3M2-01 1 1386075 1386075 C T ATAD3C Silent p.D4D 0.32 TCGA-DX-A3M2-01 1 147096577 147096577 C T BCL9 Silent p.A1366A 0.06 TCGA-DX-A3M2-01 1 156377337 156377337 C T C1orf61 Intron 0.17 TCGA-DX-A3M2-01 1 158390149 158390149 A G OR10K2 Missense_Mutation p.S170P 0.07 deleterious(0.04) probably_damaging(0.925) TCGA-DX-A3M2-01 1 176153775 176153775 C T RFWD2 Missense_Mutation p.S154N 0.07 tolerated(0.05) possibly_damaging(0.796) TCGA-DX-A3M2-01 1 178427542 178427542 G A RASAL2 Missense_Mutation p.G1039R 0.14 tolerated(0.22) probably_damaging(0.927) TCGA-DX-A3M2-01 1 181702803 181702803 C T CACNA1E Missense_Mutation p.T1060M 0.09 tolerated(0.1) benign(0) TCGA-DX-A3M2-01 1 181727998 181727998 C A CACNA1E Silent p.G1533G 0.11 TCGA-DX-A3M2-01 1 187611080 187611080 T G ERVMER61-1 RNA 0.27 TCGA-DX-A3M2-01 1 228451900 228451900 G A OBSCN Missense_Mutation p.E1741K 0.26 benign(0.288) TCGA-DX-A3M2-01 1 32950780 32950780 C T ZBTB8B Missense_Mutation p.R417C 0.09 deleterious(0.05) probably_damaging(0.97) TCGA-DX-A3M2-01 1 6635087 6635087 G A TAS1R1 Missense_Mutation p.A299T 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-DX-A3M2-01 1 74670983 74670983 G A FPGT Missense_Mutation p.V418I 0.27 tolerated(0.3) benign(0.152) TCGA-DX-A3M2-01 1 94033320 94033320 C A BCAR3 Missense_Mutation p.S688I 0.06 tolerated(0.25) probably_damaging(0.999) TCGA-DX-A3M2-01 20 17434461 17434461 C T PCSK2 Silent p.D320D 0.09 TCGA-DX-A3M2-01 20 3672652 3672652 G A SIGLEC1 Missense_Mutation p.R1410W 0.12 deleterious(0.05) benign(0.104) TCGA-DX-A3M2-01 20 37356570 37356570 C T SLC32A1 Missense_Mutation p.A289V 0.09 tolerated(0.55) benign(0.183) TCGA-DX-A3M2-01 20 60987919 60987919 G A RBBP8NL Silent p.D571D 0.29 TCGA-DX-A3M2-01 21 33719710 33719710 C T URB1 Silent p.T1141T 0.06 TCGA-DX-A3M2-01 21 41385013 41385013 C T DSCAM Missense_Mutation p.R1996Q 0.13 deleterious_low_confidence(0) benign(0.001) TCGA-DX-A3M2-01 21 42852478 42852478 T G TMPRSS2 Missense_Mutation p.K203T 0.04 tolerated(0.05) possibly_damaging(0.667) TCGA-DX-A3M2-01 21 46323418 46323418 G A ITGB2 Missense_Mutation p.R121W 0.17 deleterious(0) possibly_damaging(0.891) TCGA-DX-A3M2-01 21 47571484 47571484 G A FTCD Silent p.R208R 0.10 TCGA-DX-A3M2-01 22 20341941 20341941 C T XXbac-B33L19.6 5'Flank 0.18 TCGA-DX-A3M2-01 22 30886137 30886137 G A SEC14L4 Missense_Mutation p.T393M 0.08 deleterious(0) benign(0.298) TCGA-DX-A3M2-01 22 32439241 32439241 C T SLC5A1 5'UTR 0.24 TCGA-DX-A3M2-01 22 50656429 50656429 C T TUBGCP6 Silent p.P1762P 0.08 TCGA-DX-A3M2-01 2 113082638 113082638 A G ZC3H6 Silent p.T650T 0.07 TCGA-DX-A3M2-01 2 166011012 166011012 C T SCN3A Missense_Mutation p.E444K 0.35 tolerated(0.34) probably_damaging(0.956) TCGA-DX-A3M2-01 2 203847061 203847061 A T CARF Silent p.G652G 0.10 TCGA-DX-A3M2-01 2 51255050 51255050 C T NRXN1 Missense_Mutation p.R121H 0.31 deleterious(0) probably_damaging(0.994) TCGA-DX-A3M2-01 2 73492583 73492583 C T FBXO41 Missense_Mutation p.R464H 0.23 tolerated(0.13) possibly_damaging(0.46) TCGA-DX-A3M2-01 2 99410575 99410575 C T KIAA1211L 3'UTR 0.28 TCGA-DX-A3M2-01 3 113804664 113804664 C T QTRTD1 Silent p.Y399Y 0.09 TCGA-DX-A3M2-01 3 126139062 126139062 G A CCDC37 Missense_Mutation p.D358N 0.12 tolerated(0.15) benign(0.001) TCGA-DX-A3M2-01 3 152554147 152554147 C T P2RY1 Silent p.T192T 0.07 TCGA-DX-A3M2-01 3 33058210 33058210 G A GLB1 Silent p.N490N 0.19 TCGA-DX-A3M2-01 4 1161131 1161131 C A SPON2 3'UTR 0.33 TCGA-DX-A3M2-01 4 3215720 3215720 G A HTT Silent p.P2270P 0.26 TCGA-DX-A3M2-01 4 6082016 6082016 C T JAKMIP1 Silent p.A375A 0.22 TCGA-DX-A3M2-01 5 141248661 141248661 G T PCDH1 Missense_Mutation p.Q126K 0.23 deleterious(0.03) benign(0.245) TCGA-DX-A3M2-01 5 145239435 145239435 G A GRXCR2 Missense_Mutation p.S203L 0.24 deleterious(0) probably_damaging(0.999) TCGA-DX-A3M2-01 5 145894881 145894881 C T GPR151 Missense_Mutation p.E266K 0.28 deleterious(0.01) possibly_damaging(0.833) TCGA-DX-A3M2-01 5 147499644 147499644 C T SPINK5 Missense_Mutation p.R796W 0.16 deleterious(0) probably_damaging(0.998) TCGA-DX-A3M2-01 5 180040031 180040031 C T FLT4 Silent p.P1137P 0.15 TCGA-DX-A3M2-01 5 32087531 32087531 C T PDZD2 Missense_Mutation p.A1326V 0.11 tolerated(0.23) benign(0.003) TCGA-DX-A3M2-01 5 32780860 32780860 G A NPR3 Missense_Mutation p.G410R 0.05 deleterious(0) probably_damaging(1) TCGA-DX-A3M2-01 5 35793303 35793303 G A SPEF2 Missense_Mutation p.V1533M 0.24 deleterious(0) probably_damaging(0.997) TCGA-DX-A3M2-01 5 40693213 40693213 T A PTGER4 3'UTR 0.04 TCGA-DX-A3M2-01 5 96215697 96215697 A G ERAP2 Missense_Mutation p.N103S 0.10 deleterious(0.04) benign(0.032) TCGA-DX-A3M2-01 6 10995345 10995345 C T ELOVL2 Missense_Mutation p.V134I 0.14 tolerated(1) probably_damaging(0.999) TCGA-DX-A3M2-01 6 26598573 26598573 G A ABT1 Silent p.A173A 0.21 TCGA-DX-A3M2-01 6 32188188 32188188 G A NOTCH4 Missense_Mutation p.R385C 0.21 deleterious(0.04) possibly_damaging(0.88) TCGA-DX-A3M2-01 6 7861727 7861727 T A BMP6 Missense_Mutation p.S301T 0.16 tolerated(0.09) probably_damaging(0.951) TCGA-DX-A3M2-01 7 141871131 141871131 G A RP11-1220K2.2 Missense_Mutation p.R1081H 0.12 possibly_damaging(0.466) TCGA-DX-A3M2-01 7 96637117 96637117 G A DLX6 Missense_Mutation p.A202T 0.11 deleterious(0) probably_damaging(0.958) TCGA-DX-A3M2-01 8 139268947 139268947 G A FAM135B Missense_Mutation p.T118M 0.18 deleterious(0) probably_damaging(0.932) TCGA-DX-A3M2-01 8 22172555 22172555 G A PIWIL2 Missense_Mutation p.R702Q 0.08 tolerated(0.16) possibly_damaging(0.846) TCGA-DX-A3M2-01 8 55534123 55534123 C T RP1 Silent p.Y199Y 0.12 TCGA-DX-A3M2-01 8 6681102 6681102 C T XKR5 RNA 0.12 TCGA-DX-A3M2-01 9 101050501 101050501 G A GABBR2 3'UTR 0.12 TCGA-DX-A3M2-01 9 103261070 103261070 G A TMEFF1 Missense_Mutation p.V74I 0.09 deleterious(0.02) benign(0.001) TCGA-DX-A3M2-01 9 132374574 132374574 C T C9orf50 3'UTR 0.13 TCGA-DX-A3M2-01 9 136030486 136030486 G A GBGT1 Intron 0.19 TCGA-DX-A3M2-01 9 138586907 138586907 C T SOHLH1 Silent p.A288A 0.19 TCGA-DX-A3M2-01 9 32786108 32786108 G T TMEM215 3'UTR 0.30 TCGA-DX-A3M2-01 X 36329023 36329023 C T CXorf30 Missense_Mutation p.R201C 0.27 tolerated(0.33) benign(0.001) TCGA-DX-A3M2-01 X 48678568 48678568 C T HDAC6 Missense_Mutation p.P748L 0.12 deleterious(0) probably_damaging(1) TCGA-DX-A3M2-01 X 49074970 49074970 G A CACNA1F Nonsense_Mutation p.R969* 0.52 TCGA-DX-A3M2-01 X 53246347 53246347 C T KDM5C Missense_Mutation p.R212Q 0.57 deleterious(0.03) probably_damaging(0.97) TCGA-DX-A3M2-01 X 76875920 76875920 G A ATRX Nonsense_Mutation p.R1739* 0.40 TCGA-DX-A3U5-01 10 104417728 104417728 C T TRIM8 3'UTR 0.25 TCGA-DX-A3U5-01 10 45799842 45799842 A C OR13A1 Missense_Mutation p.I10R 0.40 tolerated_low_confidence(0.09) benign(0.039) TCGA-DX-A3U5-01 10 65380613 65380613 C G REEP3 Missense_Mutation p.P251R 0.26 deleterious(0) probably_damaging(0.913) TCGA-DX-A3U5-01 11 93796822 93796822 G A HEPHL1 Silent p.S188S 0.40 TCGA-DX-A3U5-01 12 102792899 102792899 G A IGF1 3'UTR 0.09 TCGA-DX-A3U5-01 12 43821142 43821142 C T ADAMTS20 Missense_Mutation p.C1359Y 0.29 deleterious(0) probably_damaging(1) TCGA-DX-A3U5-01 12 54798991 54798991 G A ITGA5 Missense_Mutation p.S395F 0.29 deleterious(0) possibly_damaging(0.819) TCGA-DX-A3U5-01 12 69054222 69054222 A T RAP1B 3'UTR 0.02 TCGA-DX-A3U5-01 12 69981317 69981317 C T CCT2 Silent p.A59A 0.03 TCGA-DX-A3U5-01 12 69982039 69982039 A T CCT2 Missense_Mutation p.H148L 0.03 tolerated(0.2) benign(0.017) TCGA-DX-A3U5-01 12 71531733 71531733 C G TSPAN8 Missense_Mutation p.E148D 0.10 tolerated(0.11) benign(0.178) TCGA-DX-A3U5-01 12 78513218 78513218 G A NAV3 Missense_Mutation p.S1081N 0.05 deleterious(0.03) benign(0.004) TCGA-DX-A3U5-01 12 97078824 97078824 G C C12orf55 Missense_Mutation p.W1941S 0.04 deleterious(0) benign(0) TCGA-DX-A3U5-01 13 109535494 109535494 C A MYO16 Missense_Mutation p.Q483K 0.28 tolerated(0.63) benign(0.152) TCGA-DX-A3U5-01 15 23931460 23931460 C A NDN Missense_Mutation p.R302I 0.33 deleterious(0) probably_damaging(0.996) TCGA-DX-A3U5-01 16 70048069 70048069 A C PDXDC2P Intron 0.08 TCGA-DX-A3U5-01 17 79193762 79193762 C T AZI1 Missense_Mutation p.R32H 0.32 deleterious(0) probably_damaging(1) TCGA-DX-A3U5-01 19 16008347 16008347 G A CYP4F2 Silent p.V25V 0.17 TCGA-DX-A3U5-01 19 35991479 35991479 C G DMKN Missense_Mutation p.A415P 0.23 tolerated(0.07) unknown(0) TCGA-DX-A3U5-01 19 55046966 55046966 G C KIR3DX1 Missense_Mutation p.A171P 0.34 tolerated(0.19) probably_damaging(0.97) TCGA-DX-A3U5-01 19 9068601 9068601 G T MUC16 Missense_Mutation p.T6282N 0.21 unknown(0) TCGA-DX-A3U5-01 1 63906463 63906464 TT - ITGB3BP 3'UTR 0.29 TCGA-DX-A3U5-01 1 9783348 9783348 G A PIK3CD Silent p.P864P 0.33 TCGA-DX-A3U5-01 22 37640250 37640250 C T RAC2 5'UTR 0.26 TCGA-DX-A3U5-01 2 166248173 166248173 A - SCN2A 3'UTR 0.33 TCGA-DX-A3U5-01 2 211069371 211069371 C G ACADL Missense_Mutation p.L268F 0.22 deleterious(0) possibly_damaging(0.796) TCGA-DX-A3U5-01 2 234627744 234627744 C T UGT1A4 Missense_Mutation p.T93M 0.49 tolerated(0.32) benign(0.005) TCGA-DX-A3U5-01 3 133329919 133329919 G C TOPBP1 Missense_Mutation p.R1368G 0.16 tolerated(0.13) benign(0.04) TCGA-DX-A3U5-01 3 195953859 195953859 C G SLC51A Missense_Mutation p.L53V 0.08 tolerated(0.11) benign(0.006) TCGA-DX-A3U5-01 3 62467517 62467517 C T CADPS Silent p.V1018V 0.30 TCGA-DX-A3U5-01 4 69083697 69083697 C G TMPRSS11BNL 5'UTR 0.10 TCGA-DX-A3U5-01 5 131927684 131927684 C T RAD50 Missense_Mutation p.S584L 0.48 deleterious(0.02) benign(0.018) TCGA-DX-A3U5-01 5 139623048 139623048 G A CYSTM1 3'UTR 0.21 TCGA-DX-A3U5-01 6 84665137 84665137 C T CYB5R4 Silent p.L489L 0.35 TCGA-DX-A3U5-01 7 100682064 100682064 C A MUC17 Missense_Mutation p.T2456N 0.26 probably_damaging(0.997) TCGA-DX-A3U5-01 7 142001020 142001020 G C TRBV2 Missense_Mutation p.V5L 0.24 TCGA-DX-A3U5-01 7 142423468 142423468 T A TRBV27 Missense_Mutation p.C42S 0.30 TCGA-DX-A3U5-01 8 63978639 63978639 C T TTPA Missense_Mutation p.V126I 0.31 tolerated(0.2) benign(0.002) TCGA-DX-A3U5-01 9 5335273 5335273 C G RLN1 Missense_Mutation p.R179T 0.27 deleterious(0.01) benign(0.192) TCGA-DX-A3U5-01 X 48321358 48321358 A T SLC38A5 Missense_Mutation p.F167I 0.58 deleterious(0) benign(0.347) TCGA-DX-A3U6-01 12 57346713 57346713 C T RDH16 Missense_Mutation p.A212T 0.26 tolerated(0.19) benign(0.002) TCGA-DX-A3U6-01 2 17927101 17927101 G A SMC6 Missense_Mutation p.T38I 0.11 deleterious(0.01) benign(0.04) TCGA-DX-A3U6-01 2 241653282 241653282 G A KIF1A 3'UTR 0.11 TCGA-DX-A3U6-01 9 133779553 133779553 G A FIBCD1 Silent p.H428H 0.14 TCGA-DX-A3U7-01 10 105798854 105798854 A T COL17A1 Silent p.L974L 0.12 TCGA-DX-A3U7-01 10 112045453 112045453 C A MXI1 3'UTR 0.80 TCGA-DX-A3U7-01 10 112045472 112045472 C T MXI1 3'UTR 0.89 TCGA-DX-A3U7-01 10 1205771 1205771 T C LINC00200 RNA 0.23 TCGA-DX-A3U7-01 10 135438937 135438937 G A FRG2B Missense_Mutation p.T168I 0.30 deleterious(0.02) benign(0.374) TCGA-DX-A3U7-01 10 43615578 43615578 G A RET Missense_Mutation p.R886Q 0.40 tolerated(0.08) probably_damaging(0.931) TCGA-DX-A3U7-01 11 2683460 2683460 G A KCNQ1 Intron 0.53 TCGA-DX-A3U7-01 11 58722681 58722681 G T GLYATL1 Missense_Mutation p.V147L 0.22 tolerated(0.06) benign(0.018) TCGA-DX-A3U7-01 11 62066450 62066450 C G SCGB1D4 Silent p.S11S 0.34 TCGA-DX-A3U7-01 11 62414079 62414080 AG - GANAB 5'UTR 0.24 TCGA-DX-A3U7-01 11 6977273 6977273 T A ZNF215 Nonsense_Mutation p.Y355* 0.40 TCGA-DX-A3U7-01 14 21789428 21789428 C T RPGRIP1 Missense_Mutation p.P493L 0.16 deleterious(0.01) benign(0.434) TCGA-DX-A3U7-01 15 100516423 100516423 G A ADAMTS17 Missense_Mutation p.S985L 0.47 deleterious(0) probably_damaging(0.997) TCGA-DX-A3U7-01 15 31238788 31238788 A G MTMR10 Intron 0.12 TCGA-DX-A3U7-01 15 42727686 42727686 G T ZNF106 Missense_Mutation p.H1570N 0.52 deleterious(0) probably_damaging(0.998) TCGA-DX-A3U7-01 15 54542514 54542514 C T UNC13C Missense_Mutation p.T1107I 0.28 deleterious_low_confidence(0) benign(0.289) TCGA-DX-A3U7-01 15 62261524 62261524 A C VPS13C Missense_Mutation p.I962S 0.52 deleterious(0) possibly_damaging(0.653) TCGA-DX-A3U7-01 15 78790566 78790566 C T IREB2 3'UTR 0.23 TCGA-DX-A3U7-01 18 12125943 12125943 A T ANKRD62 Missense_Mutation p.K708I 0.14 deleterious(0) probably_damaging(0.979) TCGA-DX-A3U7-01 18 22642549 22642549 C G ZNF521 3'UTR 0.25 TCGA-DX-A3U7-01 18 357461 357461 G C COLEC12 Missense_Mutation p.I40M 0.22 deleterious(0) possibly_damaging(0.703) TCGA-DX-A3U7-01 18 44114401 44114401 C T LOXHD1 Missense_Mutation p.G259E 0.39 deleterious(0) probably_damaging(1) TCGA-DX-A3U7-01 19 14000051 14000051 G A C19orf57 Nonsense_Mutation p.Q540* 0.17 TCGA-DX-A3U7-01 19 39058493 39058493 C T RYR1 Missense_Mutation p.P4532L 0.09 unknown(0) TCGA-DX-A3U7-01 19 44223484 44223484 G C IRGC Missense_Mutation p.K258N 0.74 deleterious(0) benign(0.033) TCGA-DX-A3U7-01 19 47941209 47941209 G C SLC8A2 Missense_Mutation p.T636R 0.79 tolerated(0.06) benign(0.219) TCGA-DX-A3U7-01 19 49551016 49551016 C T CGB8 Missense_Mutation p.D132N 0.70 tolerated(0.55) benign(0.184) TCGA-DX-A3U7-01 19 9362102 9362102 T A OR7E24 Missense_Mutation p.M128K 0.38 deleterious(0.02) benign(0.022) TCGA-DX-A3U7-01 1 109289387 109289387 C T STXBP3 Silent p.L10L 0.54 TCGA-DX-A3U7-01 1 160651093 160651093 G A CD48 Missense_Mutation p.T184I 0.15 tolerated(0.28) benign(0.199) TCGA-DX-A3U7-01 1 2239185 2239185 C T SKI 3'UTR 0.24 TCGA-DX-A3U7-01 1 55537558 55537559 - T USP24 Frame_Shift_Ins p.E2577Rfs*7 0.24 TCGA-DX-A3U7-01 1 57481076 57481076 C T DAB1 Silent p.P308P 0.31 TCGA-DX-A3U7-01 1 6162393 6162393 C G CHD5 3'UTR 0.30 TCGA-DX-A3U7-01 1 6162528 6162528 C G CHD5 3'UTR 0.45 TCGA-DX-A3U7-01 1 6163009 6163009 C G CHD5 3'UTR 0.16 TCGA-DX-A3U7-01 21 46888236 46888236 G A COL18A1 Missense_Mutation p.D243N 0.20 unknown(0) TCGA-DX-A3U7-01 21 46935431 46935431 G A SLC19A1 3'UTR 0.20 TCGA-DX-A3U7-01 22 30768185 30768185 G A CCDC157 Silent p.R415R 0.48 TCGA-DX-A3U7-01 2 10712176 10712176 C G NOL10 3'UTR 0.24 TCGA-DX-A3U7-01 2 21224328 21224328 T C APOB 3'UTR 0.62 TCGA-DX-A3U7-01 2 21224406 21224406 G A APOB 3'UTR 0.52 TCGA-DX-A3U7-01 2 26358602 26358602 T C RAB10 3'UTR 0.58 TCGA-DX-A3U7-01 2 44028001 44028001 C T DYNC2LI1 Silent p.L226L 0.67 TCGA-DX-A3U7-01 2 96933182 96933206 GGAAGAAGAACCAGGATGACTTTGA - CIAO1 Frame_Shift_Del 0.20 TCGA-DX-A3U7-01 3 182789076 182789076 T A MCCC1 Silent p.S187S 0.24 TCGA-DX-A3U7-01 3 19556882 19556882 G A KCNH8 Missense_Mutation p.R835Q 0.37 tolerated(0.97) benign(0.001) TCGA-DX-A3U7-01 3 98536625 98536625 C T DCBLD2 Silent p.V400V 0.22 TCGA-DX-A3U7-01 4 126328179 126328179 G T FAT4 Missense_Mutation p.D1818Y 0.25 probably_damaging(1) TCGA-DX-A3U7-01 4 162463768 162463768 C G FSTL5 Missense_Mutation p.E365Q 0.38 tolerated(0.07) probably_damaging(0.985) TCGA-DX-A3U7-01 4 53611579 53611579 T C ERVMER34-1 Missense_Mutation p.I37V 0.13 tolerated_low_confidence(1) benign(0.068) TCGA-DX-A3U7-01 5 140024571 140024571 C G TMCO6 Missense_Mutation p.A457G 0.33 tolerated(0.23) benign(0.056) TCGA-DX-A3U7-01 5 41311012 41311012 T A PLCXD3 3'UTR 0.32 TCGA-DX-A3U7-01 6 137147605 137147605 G C PEX7 Missense_Mutation p.E113Q 0.30 deleterious(0.01) probably_damaging(1) TCGA-DX-A3U7-01 6 6174956 6174956 T A F13A1 Missense_Mutation p.K535M 0.29 deleterious(0.03) benign(0.119) TCGA-DX-A3U7-01 6 84417650 84417650 C T SNAP91 5'UTR 0.27 TCGA-DX-A3U7-01 8 124031520 124031520 G C DERL1 Missense_Mutation p.L178V 0.18 tolerated(0.14) benign(0.199) TCGA-DX-A3U8-01 10 105207218 105207218 C T CALHM2 Silent p.A221A 0.10 TCGA-DX-A3U8-01 10 120354681 120354681 C T PRLHR Missense_Mutation p.A26T 0.16 tolerated(0.52) benign(0.048) TCGA-DX-A3U8-01 10 25890212 25890212 T C GPR158 3'UTR 0.34 TCGA-DX-A3U8-01 10 75404958 75404958 C A SYNPO2L 3'UTR 0.27 TCGA-DX-A3U8-01 10 88811360 88811360 C T GLUD1 3'UTR 0.09 TCGA-DX-A3U8-01 10 96022444 96022444 C T PLCE1 Silent p.C1336C 0.37 TCGA-DX-A3U8-01 11 113144349 113144349 G C NCAM1 Intron 0.14 TCGA-DX-A3U8-01 11 123909182 123909182 T A OR10G7 Missense_Mutation p.Y176F 0.24 tolerated(1) benign(0.248) TCGA-DX-A3U8-01 11 34501694 34501694 C T ELF5 3'UTR 0.25 TCGA-DX-A3U8-01 11 72012923 72012923 T C CLPB Missense_Mutation p.N448S 0.15 tolerated(0.11) possibly_damaging(0.531) TCGA-DX-A3U8-01 12 112915797 112915797 C T PTPN11 Missense_Mutation p.T357M 0.31 deleterious(0.01) possibly_damaging(0.589) TCGA-DX-A3U8-01 13 108862125 108862125 A G LIG4 Missense_Mutation p.S498P 0.13 deleterious(0.02) benign(0.026) TCGA-DX-A3U8-01 13 26621170 26621170 G A SHISA2 Silent p.S123S 0.26 TCGA-DX-A3U8-01 14 72055964 72055964 G A SIPA1L1 Missense_Mutation p.G459R 0.27 deleterious(0) probably_damaging(0.999) TCGA-DX-A3U8-01 15 25940132 25940132 G A ATP10A Silent p.I974I 0.12 TCGA-DX-A3U8-01 15 52239560 52239560 C G LEO1 Missense_Mutation p.D609H 0.19 deleterious(0) probably_damaging(0.959) TCGA-DX-A3U8-01 16 30490513 30490513 G T ITGAL Silent p.G143G 0.27 TCGA-DX-A3U8-01 17 37226190 37226190 G A PLXDC1 Silent p.V434V 0.16 TCGA-DX-A3U8-01 17 64770113 64770113 T - PRKCA Frame_Shift_Del p.Y512Ifs*61 0.19 TCGA-DX-A3U8-01 17 74283966 74283966 G A QRICH2 Nonsense_Mutation p.Q1105* 0.19 TCGA-DX-A3U8-01 18 10773521 10773521 G T PIEZO2 Missense_Mutation p.L867I 0.20 tolerated(0.2) benign(0.013) TCGA-DX-A3U8-01 18 14479052 14479052 A G CXADRP3 RNA 0.21 TCGA-DX-A3U8-01 18 47778111 47778111 G A CCDC11 Nonsense_Mutation p.Q173* 0.25 TCGA-DX-A3U8-01 19 13265424 13265424 A G IER2 3'UTR 0.16 TCGA-DX-A3U8-01 19 55583564 55583564 G T EPS8L1 5'Flank 0.22 TCGA-DX-A3U8-01 19 9298275 9298275 G A OR7D2 3'UTR 0.23 TCGA-DX-A3U8-01 1 119426822 119426822 C G TBX15 3'UTR 0.11 TCGA-DX-A3U8-01 1 119964751 119964751 G T HSD3B2 Silent p.G209G 0.16 TCGA-DX-A3U8-01 1 155726998 155726998 G A GON4L Silent p.I1790I 0.24 TCGA-DX-A3U8-01 1 182544665 182544665 A G RNASEL Silent p.F696F 0.19 TCGA-DX-A3U8-01 1 182549124 182549124 T C RNASEL Intron 0.22 TCGA-DX-A3U8-01 1 227618623 227618623 C T CTD-2090I13.1 RNA 0.21 TCGA-DX-A3U8-01 1 228582509 228582509 G A TRIM11 Missense_Mutation p.S435L 0.18 tolerated(0.06) possibly_damaging(0.493) TCGA-DX-A3U8-01 1 70820566 70820566 G A HHLA3 5'UTR 0.22 TCGA-DX-A3U8-01 22 29708008 29708008 A C GAS2L1 3'UTR 0.12 TCGA-DX-A3U8-01 22 32766942 32766942 A G RFPL3S 5'UTR 0.26 TCGA-DX-A3U8-01 2 196728925 196728925 C T DNAH7 Missense_Mutation p.R2485H 0.14 deleterious(0.01) benign(0.302) TCGA-DX-A3U8-01 2 212522509 212522509 G A ERBB4 Missense_Mutation p.T639M 0.17 tolerated(0.1) benign(0.057) TCGA-DX-A3U8-01 2 88333773 88333773 C G KRCC1 5'UTR 0.29 TCGA-DX-A3U8-01 3 107762371 107762371 T C CD47 3'Flank 0.12 TCGA-DX-A3U8-01 3 113530190 113530190 T A ATP6V1A 3'UTR 0.22 TCGA-DX-A3U8-01 3 44816813 44816813 G C KIF15 Missense_Mutation p.D44H 0.16 deleterious(0) probably_damaging(0.941) TCGA-DX-A3U8-01 3 52745199 52745199 G T NEK4 3'UTR 0.29 TCGA-DX-A3U8-01 4 151849733 151849733 A G LRBA Missense_Mutation p.Y162H 0.16 deleterious(0) probably_damaging(0.997) TCGA-DX-A3U8-01 4 156643228 156643228 C T GUCY1A3 Silent p.G585G 0.17 TCGA-DX-A3U8-01 5 112389545 112389545 C T MCC Silent p.L775L 0.34 TCGA-DX-A3U8-01 5 140603414 140603414 C G PCDHB14 Missense_Mutation p.P113A 0.10 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DX-A3U8-01 5 140784397 140784397 G A PCDHGA9 Silent p.V626V 0.18 TCGA-DX-A3U8-01 6 26104378 26104378 G C HIST1H4C Missense_Mutation p.R68P 0.19 deleterious(0) possibly_damaging(0.522) TCGA-DX-A3U8-01 7 112460007 112460007 T G C7orf60 3'UTR 0.15 TCGA-DX-A3U8-01 7 20452252 20452252 C A ITGB8 3'UTR 0.28 TCGA-DX-A3U8-01 7 33397493 33397493 T G BBS9 Missense_Mutation p.F527V 0.12 tolerated(0.49) benign(0.143) TCGA-DX-A3U8-01 8 59548025 59548025 A G NSMAF Splice_Site p.X107_splice 0.20 TCGA-DX-A3U8-01 9 134463181 134463181 C T RAPGEF1 Missense_Mutation p.E891K 0.32 deleterious(0) probably_damaging(0.999) TCGA-DX-A3U8-01 9 136897956 136897956 A T BRD3 3'UTR 0.22 TCGA-DX-A3U8-01 9 139252558 139252558 G C GPSM1 Missense_Mutation p.Q638H 0.31 tolerated(0.09) probably_damaging(1) TCGA-DX-A3U8-01 9 35105210 35105210 G A FAM214B 3'UTR 0.35 TCGA-DX-A3U8-01 9 70993134 70993134 G C PGM5 Missense_Mutation p.G94A 0.22 deleterious(0.04) probably_damaging(1) TCGA-DX-A3U8-01 X 100542581 100542581 T G TAF7L Intron 0.11 TCGA-DX-A3U9-01 10 100481499 100481499 G A HPSE2 Nonsense_Mutation p.Q291* 0.10 TCGA-DX-A3U9-01 10 119013728 119013728 G T SLC18A2 Intron 0.50 TCGA-DX-A3U9-01 10 69881497 69881497 C T MYPN Missense_Mutation p.S101F 0.56 deleterious(0.02) benign(0.192) TCGA-DX-A3U9-01 10 72291112 72291113 - C PALD1 Frame_Shift_Ins p.Y180Lfs*11 0.39 TCGA-DX-A3U9-01 11 117864124 117864124 C T IL10RA Missense_Mutation p.T179M 0.68 tolerated(0.1) benign(0.029) TCGA-DX-A3U9-01 11 123810992 123810992 C T OR4D5 Silent p.V223V 0.26 TCGA-DX-A3U9-01 11 124440623 124440623 G C OR8A1 Missense_Mutation p.G220A 0.55 tolerated(0.33) probably_damaging(0.936) TCGA-DX-A3U9-01 11 129785666 129785666 G A PRDM10 Silent p.P809P 0.74 TCGA-DX-A3U9-01 11 57971513 57971513 C G OR1S2 Missense_Mutation p.M47I 0.12 deleterious(0.02) benign(0.071) TCGA-DX-A3U9-01 12 101880268 101880268 A G SPIC Missense_Mutation p.K156E 0.23 tolerated(0.3) benign(0.03) TCGA-DX-A3U9-01 12 11420653 11420653 G A PRB3 Missense_Mutation p.P177L 0.31 tolerated(0.06) unknown(0) TCGA-DX-A3U9-01 12 63994137 63994137 T C DPY19L2 Silent p.G436G 0.36 TCGA-DX-A3U9-01 12 6840556 6840556 A T COPS7A 3'UTR 0.30 TCGA-DX-A3U9-01 12 72425339 72425339 A G TPH2 Missense_Mutation p.Y446C 0.31 deleterious(0.02) possibly_damaging(0.9) TCGA-DX-A3U9-01 13 103382411 103382411 A T CCDC168 Nonsense_Mutation p.L2250* 0.49 TCGA-DX-A3U9-01 13 21548989 21548989 T - LATS2 3'UTR 0.19 TCGA-DX-A3U9-01 14 88652381 88652381 A G KCNK10 Missense_Mutation p.I377T 0.25 tolerated(0.06) benign(0.166) TCGA-DX-A3U9-01 15 41762580 41762580 G A RTF1 Missense_Mutation p.E339K 0.46 tolerated(0.32) benign(0.001) TCGA-DX-A3U9-01 15 63958195 63958199 ATTTG - HERC1 Frame_Shift_Del p.S2825* 0.30 TCGA-DX-A3U9-01 15 64430202 64430202 C T SNX1 Intron 0.56 TCGA-DX-A3U9-01 15 75042751 75042751 T A CYP1A2 Missense_Mutation p.H224Q 0.24 deleterious(0.05) benign(0.004) TCGA-DX-A3U9-01 15 75130779 75130779 A G ULK3 Splice_Site p.X389_splice 0.37 TCGA-DX-A3U9-01 16 1265078 1265078 A G CACNA1H Missense_Mutation p.D1679G 0.26 deleterious(0) probably_damaging(0.999) TCGA-DX-A3U9-01 16 15170316 15170316 A G RRN3 Intron 0.56 TCGA-DX-A3U9-01 16 27356334 27356334 C T IL4R Silent p.S118S 0.38 TCGA-DX-A3U9-01 16 4322656 4322656 C T TFAP4 Intron 0.21 TCGA-DX-A3U9-01 17 30819740 30819740 A G MYO1D 3'UTR 0.42 TCGA-DX-A3U9-01 17 35646317 35646317 C T ACACA Intron 0.20 TCGA-DX-A3U9-01 17 36688697 36688697 T C SRCIN1 3'UTR 0.38 TCGA-DX-A3U9-01 17 37417318 37417318 C T FBXL20 3'UTR 0.05 TCGA-DX-A3U9-01 17 39577807 39577807 C T KRT37 Silent p.A351A 0.41 TCGA-DX-A3U9-01 17 74730581 74730581 C A SRSF2 3'UTR 1.00 TCGA-DX-A3U9-01 18 56367801 56367801 C T MALT1 Silent p.C209C 0.14 TCGA-DX-A3U9-01 19 15355236 15355236 G A BRD4 Missense_Mutation p.S796L 0.09 benign(0.32) TCGA-DX-A3U9-01 19 18895797 18895797 C T COMP Missense_Mutation p.S608N 0.49 tolerated(0.07) probably_damaging(0.994) TCGA-DX-A3U9-01 19 42224051 42224051 C T CEACAM5 Silent p.D565D 0.57 TCGA-DX-A3U9-01 19 44981660 44981660 A C ZNF180 Missense_Mutation p.N346K 0.19 tolerated(0.08) possibly_damaging(0.543) TCGA-DX-A3U9-01 19 54940506 54940506 G A TTYH1 Silent p.L252L 0.39 TCGA-DX-A3U9-01 19 55653228 55653228 G A TNNT1 Silent p.F63F 0.32 TCGA-DX-A3U9-01 19 5892505 5892505 T C NDUFA11 3'UTR 0.11 TCGA-DX-A3U9-01 1 11087529 11087529 C A MASP2 Missense_Mutation p.A492S 0.33 tolerated(0.78) benign(0.02) TCGA-DX-A3U9-01 1 152057569 152057569 A G TCHHL1 Silent p.L863L 0.30 TCGA-DX-A3U9-01 1 153930904 153930904 C G CRTC2 Missense_Mutation p.E24Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-DX-A3U9-01 1 177249986 177249986 G C BRINP2 Missense_Mutation p.K558N 0.62 tolerated(0.12) probably_damaging(0.994) TCGA-DX-A3U9-01 1 182499967 182499967 G A RGSL1 Silent p.E762E 0.08 TCGA-DX-A3U9-01 1 184859248 184859248 G A FAM129A Missense_Mutation p.P143S 0.47 deleterious(0.02) probably_damaging(0.971) TCGA-DX-A3U9-01 1 184859249 184859249 G C FAM129A Missense_Mutation p.D142E 0.46 deleterious(0.02) probably_damaging(0.996) TCGA-DX-A3U9-01 1 197396672 197396672 C A CRB1 Silent p.L739L 0.43 TCGA-DX-A3U9-01 1 228286501 228286501 C T ARF1 3'UTR 0.41 TCGA-DX-A3U9-01 1 249142289 249142289 C A ZNF672 Silent p.R272R 0.18 TCGA-DX-A3U9-01 1 28534923 28534923 A C DNAJC8 Missense_Mutation p.V134G 0.35 deleterious(0) benign(0.115) TCGA-DX-A3U9-01 20 279424 279424 C T ZCCHC3 Silent p.T399T 0.50 TCGA-DX-A3U9-01 20 33501958 33501958 C T ACSS2 Nonsense_Mutation p.Q235* 0.40 TCGA-DX-A3U9-01 20 45169771 45169771 C T OCSTAMP 3'UTR 0.22 TCGA-DX-A3U9-01 20 57767482 57767482 G A ZNF831 Missense_Mutation p.V470M 0.50 deleterious(0.01) benign(0.005) TCGA-DX-A3U9-01 22 21385529 21385529 G C SLC7A4 Silent p.S191S 0.88 TCGA-DX-A3U9-01 2 113786528 113786528 A G IL36B Silent p.T83T 0.53 TCGA-DX-A3U9-01 2 132912272 132912272 T G ANKRD30BL Missense_Mutation p.K193Q 0.14 deleterious(0.04) probably_damaging(0.995) TCGA-DX-A3U9-01 2 141298623 141298623 A T LRP1B Missense_Mutation p.L2478M 0.23 possibly_damaging(0.665) TCGA-DX-A3U9-01 2 179451905 179451905 C T TTN Missense_Mutation p.E21345K 0.18 TCGA-DX-A3U9-01 2 201435917 201435917 A G SGOL2 Missense_Mutation p.N283S 0.26 tolerated(0.25) benign(0.067) TCGA-DX-A3U9-01 2 74441837 74441837 C T MTHFD2 3'UTR 0.85 TCGA-DX-A3U9-01 3 128664475 128664475 G A RP11-723O4.6 Missense_Mutation p.A112V 0.33 deleterious(0) probably_damaging(0.968) TCGA-DX-A3U9-01 3 14530365 14530365 C A SLC6A6 3'UTR 0.10 TCGA-DX-A3U9-01 3 15219382 15219382 C T COL6A4P1 RNA 0.33 TCGA-DX-A3U9-01 3 172480561 172480561 G C ECT2 Missense_Mutation p.E324Q 0.11 tolerated(0.52) possibly_damaging(0.493) TCGA-DX-A3U9-01 3 35835202 35835202 A T ARPP21 Missense_Mutation p.T732S 0.33 tolerated(0.78) benign(0.059) TCGA-DX-A3U9-01 3 40502935 40502935 G A RPL14 Missense_Mutation p.A80T 0.11 deleterious(0.05) possibly_damaging(0.867) TCGA-DX-A3U9-01 3 69299250 69299250 C T FRMD4B Missense_Mutation p.G168R 0.24 deleterious(0.02) probably_damaging(1) TCGA-DX-A3U9-01 4 1246223 1246223 A T CTBP1 5'Flank 0.38 TCGA-DX-A3U9-01 4 13588097 13588097 C T BOD1L1 Missense_Mutation p.D2786N 0.39 possibly_damaging(0.463) TCGA-DX-A3U9-01 4 155244445 155244445 C A DCHS2 Intron 0.39 TCGA-DX-A3U9-01 4 173873290 173873290 C A GALNTL6 Missense_Mutation p.Q418K 0.31 deleterious(0) possibly_damaging(0.641) TCGA-DX-A3U9-01 4 175225412 175225412 A G CEP44 Silent p.Q133Q 0.12 TCGA-DX-A3U9-01 4 40339266 40339266 C T CHRNA9 Missense_Mutation p.R84C 0.45 deleterious(0) probably_damaging(0.999) TCGA-DX-A3U9-01 4 79403057 79403057 C T FRAS1 Missense_Mutation p.P2848L 0.62 possibly_damaging(0.885) TCGA-DX-A3U9-01 5 150891853 150891853 C A FAT2 Silent p.L3926L 0.22 TCGA-DX-A3U9-01 5 180377117 180377117 G A BTNL8 Missense_Mutation p.R359Q 0.55 tolerated(0.38) benign(0.196) TCGA-DX-A3U9-01 5 34831234 34831234 C T RAI14 3'Flank 0.10 TCGA-DX-A3U9-01 5 74657532 74657532 A G HMGCR 3'UTR 0.09 TCGA-DX-A3U9-01 6 114383953 114383953 A T HS3ST5 Silent p.L19L 0.38 TCGA-DX-A3U9-01 6 129939838 129939838 T - ARHGAP18 Frame_Shift_Del p.T316Qfs*11 0.33 TCGA-DX-A3U9-01 6 161010662 161010662 A T LPA Silent p.V1290V 0.31 TCGA-DX-A3U9-01 6 28542992 28542992 T G SCAND3 Missense_Mutation p.E497A 0.33 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-DX-A3U9-01 6 50681675 50681675 T A TFAP2D 5'UTR 0.06 TCGA-DX-A3U9-01 6 93964481 93964481 C T EPHA7 Missense_Mutation p.E806K 0.26 deleterious(0) probably_damaging(0.999) TCGA-DX-A3U9-01 7 100478923 100478923 G A SRRT Missense_Mutation p.R47H 0.39 deleterious(0.02) unknown(0) TCGA-DX-A3U9-01 7 11418974 11418974 T A THSD7A Intron 0.59 TCGA-DX-A3U9-01 7 16501669 16501669 C T SOSTDC1 3'UTR 0.21 TCGA-DX-A3U9-01 7 17861150 17861150 G A SNX13 Silent p.H609H 0.10 TCGA-DX-A3U9-01 7 6541514 6541514 C T GRID2IP Silent p.L1099L 0.32 TCGA-DX-A3U9-01 8 133051332 133051332 C T OC90 Missense_Mutation p.D166N 0.08 tolerated(0.05) benign(0.251) TCGA-DX-A3U9-01 8 133100132 133100132 T A HHLA1 Missense_Mutation p.E219D 0.39 tolerated(0.75) benign(0.009) TCGA-DX-A3U9-01 8 143956671 143956671 C T CYP11B1 Silent p.Q393Q 0.11 TCGA-DX-A3U9-01 8 4494979 4494979 T C CSMD1 Missense_Mutation p.I63V 0.27 benign(0.001) TCGA-DX-A3U9-01 9 138714789 138714789 G A CAMSAP1 Missense_Mutation p.A573V 0.13 tolerated(0.1) benign(0.008) TCGA-DX-A3U9-01 9 69206916 69206916 T A CBWD6 Missense_Mutation p.N291I 0.08 deleterious(0) possibly_damaging(0.486) TCGA-DX-A3U9-01 X 118717586 118717586 A G UBE2A 3'UTR 0.24 TCGA-DX-A3U9-01 X 138619188 138619188 C T F9 Silent p.N36N 0.15 TCGA-DX-A3UA-01 10 71921382 71921382 T C SAR1A Silent p.L57L 0.24 TCGA-DX-A3UA-01 12 14656854 14656854 G T PLBD1 Missense_Mutation p.S505Y 0.19 deleterious(0) possibly_damaging(0.761) TCGA-DX-A3UA-01 12 3768815 3768815 A C EFCAB4B Missense_Mutation p.I226S 0.54 tolerated(0.55) benign(0.053) TCGA-DX-A3UA-01 12 53086631 53086631 C T KRT77 Missense_Mutation p.G372R 0.39 deleterious(0) benign(0.428) TCGA-DX-A3UA-01 12 53805461 53805461 A T SP1 3'Flank 0.05 TCGA-DX-A3UA-01 14 32559863 32559863 T A ARHGAP5 5'UTR 0.32 TCGA-DX-A3UA-01 14 47324254 47324254 A C MDGA2 Silent p.V952V 0.37 TCGA-DX-A3UA-01 15 77905916 77905916 G A LINGO1 3'UTR 0.06 TCGA-DX-A3UA-01 15 90349396 90349396 C T ANPEP Missense_Mutation p.R140H 0.32 tolerated(0.06) benign(0.076) TCGA-DX-A3UA-01 17 17682037 17682037 T C RAI1 Intron 0.20 TCGA-DX-A3UA-01 17 1839011 1839011 A G RTN4RL1 3'UTR 0.31 TCGA-DX-A3UA-01 19 33281462 33281462 C T TDRD12 Missense_Mutation p.P383S 0.33 deleterious(0) possibly_damaging(0.907) TCGA-DX-A3UA-01 19 48339521 48339521 G A CRX Missense_Mutation p.R41Q 0.19 deleterious(0) probably_damaging(0.924) TCGA-DX-A3UA-01 19 51845231 51845231 G A VSIG10L Missense_Mutation p.A24V 0.50 deleterious_low_confidence(0.04) benign(0.115) TCGA-DX-A3UA-01 1 171178127 171178127 C T FMO2 3'UTR 0.07 TCGA-DX-A3UA-01 1 65305469 65305469 C A JAK1 Missense_Mutation p.G887W 0.68 deleterious(0) probably_damaging(1) TCGA-DX-A3UA-01 20 34618620 34618620 G C CNBD2 3'UTR 0.20 TCGA-DX-A3UA-01 20 3687204 3687204 G A SIGLEC1 Missense_Mutation p.R67W 0.08 deleterious(0) probably_damaging(0.927) TCGA-DX-A3UA-01 20 45170491 45170491 G A OCSTAMP Missense_Mutation p.H375Y 0.18 tolerated(0.11) possibly_damaging(0.656) TCGA-DX-A3UA-01 22 41635549 41635549 G A CHADL Silent p.A28A 0.55 TCGA-DX-A3UA-01 22 50279664 50279664 A G ZBED4 Missense_Mutation p.Q785R 0.35 tolerated(0.87) benign(0.003) TCGA-DX-A3UA-01 2 124783084 124783084 G A CNTNAP5 5'UTR 0.50 TCGA-DX-A3UA-01 2 186671383 186671383 G A FSIP2 Missense_Mutation p.A5873T 0.30 probably_damaging(0.998) TCGA-DX-A3UA-01 2 24952576 24952576 T C NCOA1 Silent p.A1031A 0.06 TCGA-DX-A3UA-01 4 106196793 106196793 G A TET2 Missense_Mutation p.C1709Y 0.41 deleterious(0.03) benign(0.376) TCGA-DX-A3UA-01 4 106196802 106196802 G A TET2 Missense_Mutation p.R1712K 0.41 tolerated(0.18) benign(0.024) TCGA-DX-A3UA-01 4 106197126 106197126 G C TET2 Missense_Mutation p.S1820T 0.35 tolerated(0.71) benign(0.007) TCGA-DX-A3UA-01 4 110897208 110897208 G A EGF Missense_Mutation p.E624K 0.31 deleterious(0) probably_damaging(0.992) TCGA-DX-A3UA-01 4 110897298 110897298 G A EGF Missense_Mutation p.D654N 0.25 tolerated(0.09) probably_damaging(0.914) TCGA-DX-A3UA-01 4 110897311 110897311 G A EGF Nonsense_Mutation p.W658* 0.21 TCGA-DX-A3UA-01 4 110897337 110897337 G C EGF Missense_Mutation p.E667Q 0.22 deleterious(0) probably_damaging(1) TCGA-DX-A3UA-01 4 157892061 157892061 T A PDGFC 5'UTR 0.32 TCGA-DX-A3UA-01 5 150920164 150920164 G C FAT2 Silent p.V3001V 0.17 TCGA-DX-A3UA-01 5 153434465 153434465 G C MFAP3 3'UTR 0.10 TCGA-DX-A3UA-01 5 153434624 153434624 G A MFAP3 3'UTR 0.17 TCGA-DX-A3UA-01 6 17615503 17615503 A T NUP153 3'UTR 0.07 TCGA-DX-A3UA-01 6 24705746 24705746 A G C6orf62 3'UTR 0.66 TCGA-DX-A3UA-01 6 31604303 31604303 C T PRRC2A Missense_Mutation p.P1951L 0.34 unknown(0) TCGA-DX-A3UA-01 6 49604429 49604429 G A RHAG Missense_Mutation p.L33F 0.42 tolerated(0.09) benign(0.005) TCGA-DX-A3UA-01 7 116340270 116340270 G A MET Missense_Mutation p.V378I 0.34 tolerated(0.53) probably_damaging(0.994) TCGA-DX-A3UA-01 7 23737906 23737906 A C FAM221A Missense_Mutation p.T245P 0.33 tolerated(0.07) benign(0.005) TCGA-DX-A3UA-01 9 125512914 125512914 C T OR1L6 Missense_Mutation p.P263L 0.27 deleterious(0) probably_damaging(1) TCGA-DX-A3UA-01 X 27766328 27766328 C T DCAF8L2 Missense_Mutation p.A439V 0.16 tolerated(0.07) benign(0.444) TCGA-DX-A3UA-01 X 30255526 30255526 G T MAGEB3 3'UTR 0.19 TCGA-DX-A3UA-01 X 63410105 63410105 G A AMER1 Missense_Mutation p.A1021V 0.80 tolerated(0.24) benign(0.424) TCGA-DX-A3UB-01 10 46967675 46967675 G A SYT15 Silent p.F134F 0.25 TCGA-DX-A3UB-01 12 109834385 109834385 G A MYO1H Missense_Mutation p.E147K 0.29 deleterious(0) probably_damaging(0.915) TCGA-DX-A3UB-01 13 31034821 31034821 A G HMGB1 3'UTR 0.10 TCGA-DX-A3UB-01 13 33684840 33684840 C T STARD13 Missense_Mutation p.D938N 0.31 deleterious(0) benign(0.362) TCGA-DX-A3UB-01 13 42273392 42273392 T C VWA8 Missense_Mutation p.T1127A 0.19 tolerated(0.55) benign(0.001) TCGA-DX-A3UB-01 17 10404621 10404621 G T MYH1 Missense_Mutation p.L1182M 0.35 tolerated(0.12) probably_damaging(1) TCGA-DX-A3UB-01 17 17380300 17380300 G C MED9 5'UTR 0.12 TCGA-DX-A3UB-01 17 18167708 18167708 A G MIEF2 Missense_Mutation p.Q343R 0.31 tolerated(0.15) possibly_damaging(0.714) TCGA-DX-A3UB-01 17 77021988 77021988 T C C1QTNF1 Intron 0.09 TCGA-DX-A3UB-01 17 80038035 80038035 G A FASN Missense_Mutation p.T2376M 0.10 tolerated(0.18) benign(0.27) TCGA-DX-A3UB-01 19 831755 831755 C T AZU1 Missense_Mutation p.H212Y 0.24 tolerated(0.06) benign(0.046) TCGA-DX-A3UB-01 4 104061060 104061060 G A CENPE Silent p.S2030S 0.30 TCGA-DX-A3UB-01 4 113436358 113436358 G A NEUROG2 Missense_Mutation p.R92W 0.35 deleterious(0) probably_damaging(0.985) TCGA-DX-A3UB-01 4 156631861 156631861 A G GUCY1A3 Missense_Mutation p.R182G 0.06 tolerated(0.27) benign(0.003) TCGA-DX-A3UB-01 4 7743153 7743153 G - SORCS2 3'UTR 0.10 TCGA-DX-A3UB-01 5 140735298 140735298 C T PCDHGA4 Silent p.Y177Y 0.12 TCGA-DX-A3UB-01 5 179157199 179157199 A G CANX 3'UTR 0.34 TCGA-DX-A3UB-01 6 35255451 35255451 C T ZNF76 Silent p.A87A 0.33 TCGA-DX-A3UB-01 6 37139016 37139025 TCCTGGAGAG - PIM1 Frame_Shift_Del p.I119Sfs*152 0.29 TCGA-DX-A3UB-01 6 71270310 71270310 T G FAM135A 3'UTR 0.10 TCGA-DX-A3UB-01 8 95658450 95658450 A - ESRP1 Frame_Shift_Del p.K144Rfs*18 0.30 TCGA-DX-A3UB-01 X 53559710 53559711 - T HUWE1 3'UTR 0.28 TCGA-DX-A3UC-01 10 15686193 15686193 C T ITGA8 Missense_Mutation p.G412D 0.13 deleterious(0) probably_damaging(0.981) TCGA-DX-A3UC-01 11 111420356 111420356 G T LAYN Missense_Mutation p.D141Y 0.27 deleterious(0) probably_damaging(1) TCGA-DX-A3UC-01 11 74414359 74414359 T C CHRDL2 Missense_Mutation p.I313V 0.47 tolerated(0.73) benign(0.06) TCGA-DX-A3UC-01 12 56749495 56749495 T C STAT2 Silent p.Q126Q 0.94 TCGA-DX-A3UC-01 12 80663926 80663926 C T OTOGL Missense_Mutation p.P828L 0.47 deleterious(0.04) benign(0.17) TCGA-DX-A3UC-01 13 39263770 39263770 G C FREM2 Missense_Mutation p.L763F 0.16 tolerated(0.06) benign(0.003) TCGA-DX-A3UC-01 14 105412143 105412143 G C AHNAK2 Missense_Mutation p.H3215Q 0.16 benign(0.005) TCGA-DX-A3UC-01 14 95584038 95584038 T C DICER1 Missense_Mutation p.N477S 0.45 tolerated(0.53) possibly_damaging(0.801) TCGA-DX-A3UC-01 15 102294619 102294619 C T DNM1P47 RNA 0.14 TCGA-DX-A3UC-01 15 53081679 53081693 GGTGGTGGTGGTGAT - ONECUT1 In_Frame_Del p.H130_H134del 0.34 TCGA-DX-A3UC-01 15 75562507 75562507 C T GOLGA6C Silent p.I683I 0.36 TCGA-DX-A3UC-01 16 15221350 15221350 G T RP11-1186N24.5 RNA 0.46 TCGA-DX-A3UC-01 16 2692244 2692244 C G CTD-3126B10.4 3'Flank 0.41 TCGA-DX-A3UC-01 16 3299599 3299599 C T MEFV Silent p.P364P 0.54 TCGA-DX-A3UC-01 16 3641103 3641103 C T SLX4 Missense_Mutation p.V846M 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-DX-A3UC-01 16 71748565 71748565 G A PHLPP2 Missense_Mutation p.T45I 0.95 tolerated_low_confidence(0.08) benign(0.063) TCGA-DX-A3UC-01 17 16722165 16722165 G T AC022596.6 RNA 0.45 TCGA-DX-A3UC-01 17 39845149 39845162 GAGCCGCCGCCGAG - EIF1 5'UTR 0.56 TCGA-DX-A3UC-01 17 40463829 40463829 G A STAT5A 3'UTR 0.49 TCGA-DX-A3UC-01 17 40729728 40729735 GAAAGCCG - PSMC3IP 5'UTR 0.50 TCGA-DX-A3UC-01 17 7592932 7592932 G C WRAP53 Missense_Mutation p.L185F 0.95 deleterious(0) probably_damaging(0.998) TCGA-DX-A3UC-01 19 16008315 16008315 G A CYP4F2 Missense_Mutation p.A36V 0.19 tolerated(0.21) benign(0.02) TCGA-DX-A3UC-01 19 48968878 48968879 - T KCNJ14 3'UTR 0.15 TCGA-DX-A3UC-01 1 157062675 157062675 T C ETV3L Silent p.P284P 0.53 TCGA-DX-A3UC-01 1 16360470 16360470 G A CLCNKA 3'UTR 0.06 TCGA-DX-A3UC-01 1 226548865 226548865 T A PARP1 3'UTR 0.43 TCGA-DX-A3UC-01 1 233518139 233518139 C T MLK4 Silent p.V931V 0.42 TCGA-DX-A3UC-01 1 91406009 91406009 G C ZNF644 Missense_Mutation p.T301S 0.57 tolerated(0.2) possibly_damaging(0.685) TCGA-DX-A3UC-01 20 2841110 2841110 C T VPS16 Missense_Mutation p.R129W 0.11 deleterious(0.01) probably_damaging(0.91) TCGA-DX-A3UC-01 20 31996310 31996310 C A SNTA1 3'UTR 0.50 TCGA-DX-A3UC-01 21 48083355 48083355 A T PRMT2 Silent p.G386G 0.50 TCGA-DX-A3UC-01 22 42276780 42276780 C A SREBF2 Missense_Mutation p.L608M 0.28 deleterious(0.02) possibly_damaging(0.729) TCGA-DX-A3UC-01 2 133014623 133014623 C A MIR663B RNA 0.18 TCGA-DX-A3UC-01 2 21228496 21228496 C T APOB Silent p.T3748T 0.82 TCGA-DX-A3UC-01 3 44943114 44943114 C A TGM4 Silent p.I252I 0.54 TCGA-DX-A3UC-01 4 176555750 176555750 A G GPM6A 3'UTR 0.37 TCGA-DX-A3UC-01 5 111576464 111576464 G T EPB41L4A Missense_Mutation p.A280D 0.26 deleterious(0) benign(0.211) TCGA-DX-A3UC-01 5 125936716 125936716 C T PHAX Missense_Mutation p.T21M 0.10 tolerated(0.11) benign(0.032) TCGA-DX-A3UC-01 5 140021484 140021484 G T TMCO6 Missense_Mutation p.G115V 0.60 deleterious(0) probably_damaging(1) TCGA-DX-A3UC-01 5 41042208 41042208 C T MROH2B Missense_Mutation p.G647R 0.48 deleterious(0.05) benign(0.212) TCGA-DX-A3UC-01 6 109787361 109787361 G A ZBTB24 Missense_Mutation p.T596M 0.10 deleterious(0) possibly_damaging(0.81) TCGA-DX-A3UC-01 6 112457392 112457392 C A LAMA4 Missense_Mutation p.S1116I 0.38 deleterious(0) probably_damaging(0.918) TCGA-DX-A3UC-01 6 167754600 167754600 G C TTLL2 Missense_Mutation p.K404N 0.42 deleterious(0) probably_damaging(0.986) TCGA-DX-A3UC-01 6 167770996 167770996 T A TCP10 3'UTR 0.39 TCGA-DX-A3UC-01 7 107788355 107788355 A T NRCAM 3'UTR 0.43 TCGA-DX-A3UC-01 7 76941178 76941178 T A GSAP Missense_Mutation p.D818V 0.25 deleterious(0) benign(0.168) TCGA-DX-A3UC-01 8 62559366 62559366 T A ASPH Missense_Mutation p.M188L 0.56 tolerated_low_confidence(0.35) benign(0.026) TCGA-DX-A3UC-01 9 109690005 109690005 C T ZNF462 Missense_Mutation p.S1271L 0.52 probably_damaging(0.996) TCGA-DX-A3UC-01 9 133263827 133263827 G A HMCN2 3'Flank 0.28 TCGA-DX-A3UC-01 9 133263837 133263837 C A HMCN2 3'Flank 0.33 TCGA-DX-A3UC-01 9 136594926 136594926 G A SARDH Silent p.H292H 0.27 TCGA-DX-A3UC-01 X 132436560 132436561 - A GPC4 3'UTR 0.12 TCGA-DX-A3UC-01 X 23397790 23397790 A G PTCHD1 Missense_Mutation p.D145G 0.22 tolerated(0.43) benign(0.089) TCGA-DX-A3UD-01 10 121337184 121337184 C T TIAL1 Silent p.V224V 0.17 TCGA-DX-A3UD-01 10 91398993 91398993 G C PANK1 Intron 0.77 TCGA-DX-A3UD-01 11 16805332 16805332 C G PLEKHA7 3'Flank 0.33 TCGA-DX-A3UD-01 11 18955501 18955501 G T MRGPRX1 Silent p.S277S 0.94 TCGA-DX-A3UD-01 11 2407360 2407360 G A CD81 Intron 0.37 TCGA-DX-A3UD-01 12 52960626 52960626 G T KRT74 3'UTR 0.48 TCGA-DX-A3UD-01 12 56625299 56625299 C T SLC39A5 Silent p.L81L 0.55 TCGA-DX-A3UD-01 14 94004450 94004450 G C UNC79 Missense_Mutation p.S236T 0.42 deleterious(0.03) benign(0.09) TCGA-DX-A3UD-01 15 31666680 31666680 T C KLF13 3'UTR 0.52 TCGA-DX-A3UD-01 15 49176558 49176558 C T SHC4 Missense_Mutation p.V243I 0.25 tolerated(0.07) benign(0.243) TCGA-DX-A3UD-01 16 24226499 24226499 T C PRKCB 3'UTR 0.33 TCGA-DX-A3UD-01 16 50264680 50264680 G A PAPD5 3'UTR 0.25 TCGA-DX-A3UD-01 16 50264686 50264686 G A PAPD5 3'UTR 0.20 TCGA-DX-A3UD-01 17 1939349 1939349 G T DPH1 Missense_Mutation p.A127S 0.41 deleterious(0) possibly_damaging(0.88) TCGA-DX-A3UD-01 17 41831185 41831185 T C SOST 3'UTR 0.74 TCGA-DX-A3UD-01 17 7464462 7464462 T C TNFSF12-TNFSF13 3'UTR 0.51 TCGA-DX-A3UD-01 18 21519316 21519316 C T LAMA3 Silent p.L2998L 0.12 TCGA-DX-A3UD-01 18 29040795 29040795 G T DSG3 Splice_Site p.X229_splice 0.51 TCGA-DX-A3UD-01 18 43573597 43573597 A G PSTPIP2 Missense_Mutation p.S239P 0.35 deleterious(0) probably_damaging(0.987) TCGA-DX-A3UD-01 18 7026019 7026019 G T LAMA1 Missense_Mutation p.D787E 0.32 deleterious(0.04) possibly_damaging(0.852) TCGA-DX-A3UD-01 19 16620577 16620586 GAAAACTCTC - C19orf44 Frame_Shift_Del p.E473Qfs*3 0.57 TCGA-DX-A3UD-01 19 54598510 54598510 G A OSCAR 3'UTR 0.29 TCGA-DX-A3UD-01 1 172425565 172425565 A T C1orf105 Missense_Mutation p.N70I 0.14 tolerated(0.15) benign(0.006) TCGA-DX-A3UD-01 1 18811512 18811512 A C KLHDC7A 3'UTR 0.92 TCGA-DX-A3UD-01 1 248801804 248801804 G A OR2T35 Silent p.Y252Y 0.50 TCGA-DX-A3UD-01 1 6885151 6885151 G A CAMTA1 Splice_Site p.X39_splice 0.57 TCGA-DX-A3UD-01 20 309259 309259 C G SOX12 3'UTR 0.30 TCGA-DX-A3UD-01 21 45959750 45959750 C G KRTAP10-1 Missense_Mutation p.C95S 0.27 deleterious(0.01) unknown(0) TCGA-DX-A3UD-01 22 25251313 25251313 C T SGSM1 Silent p.P195P 0.21 TCGA-DX-A3UD-01 22 40364152 40364153 - C GRAP2 Frame_Shift_Ins p.T192Dfs*47 0.39 TCGA-DX-A3UD-01 22 44333049 44333049 G A PNPLA3 Silent p.L292L 0.54 TCGA-DX-A3UD-01 3 128182759 128182759 T G DNAJB8 5'UTR 0.47 TCGA-DX-A3UD-01 3 169988342 169988342 T A PRKCI Nonsense_Mutation p.L195* 0.21 TCGA-DX-A3UD-01 3 182759436 182759436 T C MCCC1 Missense_Mutation p.M396V 0.45 deleterious(0.01) benign(0.141) TCGA-DX-A3UD-01 3 19576202 19576202 T A KCNH8 3'UTR 0.19 TCGA-DX-A3UD-01 3 38601865 38601865 C T SCN5A Missense_Mutation p.V1340I 0.23 deleterious(0) probably_damaging(0.996) TCGA-DX-A3UD-01 3 9743521 9743521 C T MTMR14 Missense_Mutation p.S606L 0.18 tolerated(0.16) benign(0.058) TCGA-DX-A3UD-01 4 55599285 55599285 G A KIT Missense_Mutation p.R804Q 0.61 deleterious(0) probably_damaging(1) TCGA-DX-A3UD-01 5 178413152 178413152 G T GRM6 Silent p.T701T 0.62 TCGA-DX-A3UD-01 6 153365122 153365122 C T RGS17 Missense_Mutation p.G11E 0.15 tolerated(0.48) benign(0.001) TCGA-DX-A3UD-01 7 138596018 138596018 C T KIAA1549 Missense_Mutation p.V1007I 0.66 tolerated(0.22) benign(0.064) TCGA-DX-A3UD-01 7 143632973 143632973 G C OR2F2 Missense_Mutation p.L216F 0.33 tolerated(0.81) benign(0.073) TCGA-DX-A3UD-01 7 28452424 28452424 T C CREB5 5'UTR 0.57 TCGA-DX-A3UD-01 7 6487537 6487537 G C DAGLB 5'UTR 0.79 TCGA-DX-A3UD-01 7 72755324 72755324 C T FKBP6 Missense_Mutation p.A279V 0.26 deleterious(0) probably_damaging(0.999) TCGA-DX-A3UD-01 8 25364178 25364178 T C CDCA2 Missense_Mutation p.S666P 0.43 tolerated(0.07) benign(0.275) TCGA-DX-A3UD-01 9 130500619 130500619 T C SH2D3C 3'UTR 0.86 TCGA-DX-A3UD-01 X 123513958 123513958 T A TENM1 3'UTR 0.89 TCGA-DX-A3UD-01 X 76939418 76939418 G A ATRX Nonsense_Mutation p.R444* 0.92 TCGA-DX-A3UE-01 10 1230815 1230815 G A ADARB2 Missense_Mutation p.R677W 0.34 deleterious(0) possibly_damaging(0.789) TCGA-DX-A3UE-01 10 16873360 16873360 C T CUBN Silent p.L3473L 0.34 TCGA-DX-A3UE-01 10 18122792 18122792 G A MRC1 Missense_Mutation p.G268R 0.96 deleterious(0.01) probably_damaging(0.99) TCGA-DX-A3UE-01 10 97402888 97402888 C T ALDH18A1 Missense_Mutation p.R55H 0.51 deleterious(0.05) benign(0.011) TCGA-DX-A3UE-01 11 123900401 123900401 C A OR10G8 Silent p.P24P 0.41 TCGA-DX-A3UE-01 11 18733913 18733913 T C IGSF22 Missense_Mutation p.Q705R 0.15 tolerated(0.07) possibly_damaging(0.555) TCGA-DX-A3UE-01 11 428528 428528 C T ANO9 Missense_Mutation p.V378M 0.09 deleterious(0.02) possibly_damaging(0.737) TCGA-DX-A3UE-01 11 57947748 57947748 A G OR9Q1 Missense_Mutation p.T278A 0.06 deleterious(0.04) probably_damaging(0.999) TCGA-DX-A3UE-01 12 121603881 121603881 T A P2RX7 Nonsense_Mutation p.L212* 0.07 TCGA-DX-A3UE-01 12 124832774 124832774 A T NCOR2 Missense_Mutation p.Y1311N 0.10 probably_damaging(0.999) TCGA-DX-A3UE-01 12 29669380 29669380 C T TMTC1 Missense_Mutation p.E737K 0.29 deleterious(0.02) possibly_damaging(0.734) TCGA-DX-A3UE-01 12 56143468 56143468 C T GDF11 Silent p.S342S 0.45 TCGA-DX-A3UE-01 12 81102319 81102319 T A MYF6 Missense_Mutation p.F179Y 0.39 tolerated(1) probably_damaging(0.931) TCGA-DX-A3UE-01 12 92816388 92816388 C G CLLU1OS Missense_Mutation p.S26T 0.46 tolerated_low_confidence(0.26) benign(0) TCGA-DX-A3UE-01 13 49030390 49030391 - A RB1 Frame_Shift_Ins p.N623Kfs*30 0.43 TCGA-DX-A3UE-01 13 99340755 99340755 C A SLC15A1 Missense_Mutation p.A515S 0.42 tolerated(0.32) benign(0.006) TCGA-DX-A3UE-01 14 35222712 35222712 A T BAZ1A 3'UTR 0.09 TCGA-DX-A3UE-01 14 55903571 55903571 C T TBPL2 Missense_Mutation p.V106I 0.07 tolerated_low_confidence(0.19) benign(0.001) TCGA-DX-A3UE-01 15 23437006 23437006 A T GOLGA8EP RNA 0.78 TCGA-DX-A3UE-01 15 31318389 31318389 A C TRPM1 Missense_Mutation p.D1211E 0.11 tolerated(0.33) probably_damaging(0.978) TCGA-DX-A3UE-01 15 43815267 43815267 A T MAP1A Silent p.T532T 0.08 TCGA-DX-A3UE-01 15 86118421 86118421 A G AKAP13 Missense_Mutation p.D241G 0.39 deleterious(0.02) possibly_damaging(0.572) TCGA-DX-A3UE-01 16 24373086 24373086 C T CACNG3 Missense_Mutation p.R284W 0.55 deleterious(0.01) probably_damaging(0.976) TCGA-DX-A3UE-01 16 66998569 66998569 C A CES3 Missense_Mutation p.T253K 0.41 tolerated(0.07) benign(0.229) TCGA-DX-A3UE-01 17 10355349 10355349 C T MYH4 Missense_Mutation p.R1216Q 0.34 tolerated(0.11) probably_damaging(0.942) TCGA-DX-A3UE-01 17 7577152 7577154 ACC - TP53 In_Frame_Del p.G262del 0.75 TCGA-DX-A3UE-01 18 33694172 33694172 A C SLC39A6 Missense_Mutation p.S577R 0.22 tolerated(0.11) probably_damaging(0.998) TCGA-DX-A3UE-01 18 3457483 3457483 T C TGIF1 Missense_Mutation p.S251P 0.64 tolerated_low_confidence(0.11) benign(0.013) TCGA-DX-A3UE-01 18 63511094 63511094 C A CDH7 Missense_Mutation p.A343D 0.61 deleterious(0) probably_damaging(0.969) TCGA-DX-A3UE-01 19 12638575 12638575 G A ZNF564 Missense_Mutation p.S116L 0.45 deleterious(0.05) benign(0.045) TCGA-DX-A3UE-01 19 13397420 13397420 G A CACNA1A Silent p.S1150S 0.44 TCGA-DX-A3UE-01 19 15357922 15357922 T C BRD4 Intron 0.29 TCGA-DX-A3UE-01 19 34949766 34949766 C G UBA2 Missense_Mutation p.S446R 0.32 tolerated(0.21) benign(0.027) TCGA-DX-A3UE-01 19 35793405 35793405 C T MAG Missense_Mutation p.T342M 0.53 deleterious(0.04) possibly_damaging(0.867) TCGA-DX-A3UE-01 19 40172709 40172709 G A AC093063.3 5'Flank 0.48 TCGA-DX-A3UE-01 19 46891839 46891839 G A PPP5C Silent p.V402V 0.43 TCGA-DX-A3UE-01 19 54200859 54200859 G A MIR525 RNA 0.50 TCGA-DX-A3UE-01 1 115828887 115828887 G T NGF Missense_Mutation p.T177N 0.40 deleterious(0) probably_damaging(0.999) TCGA-DX-A3UE-01 1 151105572 151105572 G A SEMA6C Silent p.N759N 0.44 TCGA-DX-A3UE-01 1 152330046 152330046 A C FLG2 Silent p.T72T 0.39 TCGA-DX-A3UE-01 1 152382389 152382389 A T CRNN Missense_Mutation p.V390E 0.11 tolerated(0.27) benign(0.014) TCGA-DX-A3UE-01 1 153634783 153634783 C T ILF2 3'UTR 0.12 TCGA-DX-A3UE-01 1 168106608 168106608 G T GPR161 5'Flank 0.43 TCGA-DX-A3UE-01 1 197398724 197398724 C T CRB1 Missense_Mutation p.P941L 0.32 tolerated(1) benign(0) TCGA-DX-A3UE-01 1 224301822 224301822 A T FBXO28 5'UTR 0.05 TCGA-DX-A3UE-01 1 233122167 233122167 T C PCNXL2 Missense_Mutation p.T1971A 0.31 tolerated(0.21) benign(0.005) TCGA-DX-A3UE-01 1 236647378 236647378 A G EDARADD 3'Flank 0.37 TCGA-DX-A3UE-01 1 46660016 46660016 C T POMGNT1 Missense_Mutation p.S270N 0.06 benign(0.01) TCGA-DX-A3UE-01 1 51435882 51435882 A T CDKN2C Intron 0.37 TCGA-DX-A3UE-01 20 17464760 17464760 A T PCSK2 3'UTR 0.73 TCGA-DX-A3UE-01 20 17464774 17464774 C A PCSK2 3'UTR 0.70 TCGA-DX-A3UE-01 20 30009354 30009354 T C DEFB122 RNA 0.04 TCGA-DX-A3UE-01 20 30467663 30467663 T A TTLL9 Intron 0.05 TCGA-DX-A3UE-01 22 19384361 19384361 C G HIRA Missense_Mutation p.W201C 0.07 deleterious(0) probably_damaging(0.998) TCGA-DX-A3UE-01 22 24324899 24324899 G A GSTT2 Missense_Mutation p.R94H 0.22 deleterious(0.02) benign(0.033) TCGA-DX-A3UE-01 2 209030323 209030323 G T C2orf80 3'UTR 0.27 TCGA-DX-A3UE-01 2 220116779 220116779 T C TUBA4A Silent p.G59G 0.45 TCGA-DX-A3UE-01 2 234055052 234055052 C T INPP5D Missense_Mutation p.R280W 0.08 tolerated(0.06) benign(0.027) TCGA-DX-A3UE-01 2 234622417 234622417 C T UGT1A5 Silent p.D260D 0.37 TCGA-DX-A3UE-01 3 115535479 115535479 C T LSAMP Intron 0.46 TCGA-DX-A3UE-01 3 122634407 122634407 T C SEMA5B Missense_Mutation p.H677R 0.09 deleterious(0.01) possibly_damaging(0.864) TCGA-DX-A3UE-01 3 130361687 130361687 A G COL6A6 Silent p.G1722G 0.08 TCGA-DX-A3UE-01 3 143297459 143297459 T C SLC9A9 Missense_Mutation p.M288V 0.41 tolerated(0.07) benign(0.022) TCGA-DX-A3UE-01 3 161214858 161214858 A G OTOL1 Missense_Mutation p.E88G 0.43 tolerated(0.09) unknown(0) TCGA-DX-A3UE-01 3 22210423 22210423 T G ZNF385D RNA 0.07 TCGA-DX-A3UE-01 3 37092205 37092205 T C MLH1 3'UTR 0.08 TCGA-DX-A3UE-01 3 42573303 42573303 A G VIPR1 Missense_Mutation p.D287G 0.41 deleterious(0) possibly_damaging(0.861) TCGA-DX-A3UE-01 3 49750277 49750277 A T RNF123 Intron 0.11 TCGA-DX-A3UE-01 4 15938241 15938241 G T FGFBP1 Missense_Mutation p.S5R 0.84 tolerated(0.14) benign(0.307) TCGA-DX-A3UE-01 4 42080286 42080286 G C SLC30A9 Missense_Mutation p.E536Q 0.07 deleterious(0) probably_damaging(0.975) TCGA-DX-A3UE-01 4 88394925 88394925 G A SPARCL1 3'UTR 0.62 TCGA-DX-A3UE-01 5 102295643 102295643 G C PAM Missense_Mutation p.V324L 0.06 tolerated(0.18) benign(0.002) TCGA-DX-A3UE-01 5 131305834 131305834 G A ACSL6 Silent p.G498G 0.41 TCGA-DX-A3UE-01 5 140263447 140263447 C A PCDHA13 Missense_Mutation p.Q532K 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.596) TCGA-DX-A3UE-01 5 140807667 140807667 G A PCDHGB6 Intron 0.50 TCGA-DX-A3UE-01 5 148206526 148206526 C T ADRB2 Silent p.V44V 0.46 TCGA-DX-A3UE-01 5 153434288 153434288 G A MFAP3 3'UTR 0.05 TCGA-DX-A3UE-01 6 32796537 32796537 G C TAP2 Intron 0.44 TCGA-DX-A3UE-01 6 44278041 44278041 G A AARS2 Nonsense_Mutation p.Q297* 0.39 TCGA-DX-A3UE-01 6 53986337 53986337 C G MLIP Silent p.T52T 0.40 TCGA-DX-A3UE-01 7 111368531 111368531 C A DOCK4 Silent p.P1900P 0.12 TCGA-DX-A3UE-01 7 123671913 123671913 T - TMEM229A 3'UTR 0.30 TCGA-DX-A3UE-01 7 148771578 148771578 C G ZNF786 Missense_Mutation p.E66D 0.60 tolerated(0.09) benign(0.039) TCGA-DX-A3UE-01 7 6662271 6662271 T A ZNF853 Missense_Mutation p.F550Y 0.13 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-DX-A3UE-01 9 129598673 129598673 G A ZBTB43 3'UTR 0.14 TCGA-DX-A3UE-01 9 139275295 139275295 T C SNAPC4 Missense_Mutation p.H799R 0.47 deleterious(0) benign(0) TCGA-DX-A3UE-01 9 140070253 140070253 G A ANAPC2 Silent p.L643L 0.43 TCGA-DX-A3UE-01 9 140175764 140175764 C A TOR4A 3'UTR 0.43 TCGA-DX-A3UE-01 9 140379046 140379046 G A PNPLA7 Silent p.S780S 0.45 TCGA-DX-A3UE-01 9 14087422 14087424 ATA TT NFIB 3'Flank 0.40 TCGA-DX-A3UE-01 9 19116354 19116354 T C PLIN2 Silent p.V402V 0.46 TCGA-DX-A3UE-01 9 84608855 84608855 C T SPATA31D1 Missense_Mutation p.T1157I 0.45 deleterious(0.02) possibly_damaging(0.675) TCGA-DX-A3UE-01 X 100615557 100615557 C G BTK Missense_Mutation p.G259R 0.50 deleterious(0) probably_damaging(0.994) TCGA-DX-A3UE-01 X 103080663 103080663 C A RAB9B Missense_Mutation p.V18F 0.36 deleterious(0) probably_damaging(1) TCGA-DX-A3UE-01 X 108906533 108906533 C G ACSL4 Missense_Mutation p.A538P 0.08 tolerated(0.09) benign(0.21) TCGA-DX-A3UE-01 X 122756709 122756709 T G THOC2 Missense_Mutation p.K1229Q 0.50 tolerated(0.06) benign(0.23) TCGA-DX-A3UE-01 X 18257532 18257532 T A SCML2 3'UTR 0.60 TCGA-DX-A3UE-01 X 2828804 2828804 C A ARSD Missense_Mutation p.G344V 0.05 deleterious(0) possibly_damaging(0.905) TCGA-DX-A3UE-01 X 37028799 37028799 C A FAM47C Silent p.S772S 0.53 TCGA-DX-A3UE-01 X 49593930 49593930 C T PAGE4 5'UTR 0.60 TCGA-DX-A3UE-01 X 53262791 53262791 C T IQSEC2 3'UTR 0.29 TCGA-DX-A3UE-01 X 96140083 96140083 G C RPA4 Missense_Mutation p.K258N 0.54 deleterious(0) probably_damaging(0.994) TCGA-DX-A3UF-01 10 3146134 3146134 G C PFKP Missense_Mutation p.Q206H 0.53 tolerated(0.25) benign(0.001) TCGA-DX-A3UF-01 10 43288583 43288583 C T BMS1 Silent p.H360H 0.07 TCGA-DX-A3UF-01 10 85979046 85979046 C A CDHR1 3'Flank 0.62 TCGA-DX-A3UF-01 11 113614671 113614671 T A ZW10 Missense_Mutation p.Y455F 0.29 tolerated(0.69) benign(0) TCGA-DX-A3UF-01 11 118894150 118894150 C T TRAPPC4 3'UTR 0.20 TCGA-DX-A3UF-01 11 128843174 128843174 G A ARHGAP32 Missense_Mutation p.P1062L 0.09 deleterious_low_confidence(0.01) benign(0.04) TCGA-DX-A3UF-01 12 118199225 118199225 T C KSR2 Missense_Mutation p.T193A 0.10 tolerated(0.71) benign(0.002) TCGA-DX-A3UF-01 12 123042022 123042022 T C KNTC1 Missense_Mutation p.V455A 0.11 deleterious(0) benign(0.038) TCGA-DX-A3UF-01 12 79689987 79689987 C G SYT1 Missense_Mutation p.P205A 0.09 deleterious(0) probably_damaging(0.999) TCGA-DX-A3UF-01 13 113750836 113750836 G T MCF2L Intron 0.16 TCGA-DX-A3UF-01 14 102898417 102898417 G C TECPR2 Missense_Mutation p.V457L 0.13 tolerated(0.08) benign(0.141) TCGA-DX-A3UF-01 14 104201334 104201334 C T PPP1R13B 3'UTR 0.37 TCGA-DX-A3UF-01 14 105848840 105848840 G T PACS2 Missense_Mutation p.Q480H 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-DX-A3UF-01 14 47120671 47120671 C T RPL10L Missense_Mutation p.R90Q 0.05 tolerated(0.11) benign(0.015) TCGA-DX-A3UF-01 14 68008663 68008663 C T PLEKHH1 Missense_Mutation p.R27W 0.06 deleterious(0) probably_damaging(0.915) TCGA-DX-A3UF-01 14 86092654 86092654 T G FLRT2 3'UTR 0.43 TCGA-DX-A3UF-01 15 24922764 24922764 T C NPAP1 Missense_Mutation p.S584P 0.21 tolerated(0.06) probably_damaging(0.943) TCGA-DX-A3UF-01 15 24925497 24925497 G C NPAP1 3'UTR 0.22 TCGA-DX-A3UF-01 15 48780437 48780437 G A FBN1 Silent p.D1070D 0.43 TCGA-DX-A3UF-01 15 74628451 74628451 A C CCDC33 3'UTR 0.10 TCGA-DX-A3UF-01 16 1479302 1479302 T C C16orf91 Missense_Mutation p.E15G 0.16 deleterious_low_confidence(0.03) benign(0.01) TCGA-DX-A3UF-01 16 22580493 22580493 A T RP11-368J21.3 RNA 0.17 TCGA-DX-A3UF-01 17 1630298 1630298 C T WDR81 Missense_Mutation p.S682F 0.51 deleterious(0.03) possibly_damaging(0.812) TCGA-DX-A3UF-01 17 7578191 7578191 A C TP53 Missense_Mutation p.Y220D 0.78 deleterious(0) probably_damaging(1) TCGA-DX-A3UF-01 19 11473211 11473211 G A DKFZP761J1410 Missense_Mutation p.R204H 0.08 deleterious(0.01) possibly_damaging(0.852) TCGA-DX-A3UF-01 19 14939050 14939050 C A OR7A5 Nonsense_Mutation p.E2* 0.44 TCGA-DX-A3UF-01 19 17463070 17463070 G C PLVAP 3'UTR 0.06 TCGA-DX-A3UF-01 19 19751263 19751263 G A GMIP Missense_Mutation p.A119V 0.05 tolerated(0.2) possibly_damaging(0.592) TCGA-DX-A3UF-01 19 50100901 50100901 G A PRR12 Silent p.A1103A 0.29 TCGA-DX-A3UF-01 19 55753603 55753604 - CC PPP6R1 Frame_Shift_Ins p.E259Gfs*16 0.22 TCGA-DX-A3UF-01 19 9452214 9452214 G A ZNF559 Intron 0.18 TCGA-DX-A3UF-01 1 117690386 117690386 C T VTCN1 Missense_Mutation p.R248Q 0.27 tolerated(0.49) benign(0.002) TCGA-DX-A3UF-01 1 153615716 153615716 C T CHTOP Silent p.L139L 0.31 TCGA-DX-A3UF-01 1 155288023 155288023 C G FDPS Missense_Mutation p.L209V 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A3UF-01 1 158577164 158577164 A G OR10Z1 Silent p.K312K 0.48 TCGA-DX-A3UF-01 1 160187381 160187383 CTC TT DCAF8 Missense_Mutation 0.47 TCGA-DX-A3UF-01 1 160187406 160187406 G C DCAF8 Missense_Mutation p.D744E 0.64 deleterious(0.04) benign(0.203) TCGA-DX-A3UF-01 1 177133566 177133566 C T ASTN1 Missense_Mutation p.D83N 0.13 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-DX-A3UF-01 1 182458326 182458326 T A RGSL1 Missense_Mutation p.V569E 0.33 deleterious(0.04) benign(0.327) TCGA-DX-A3UF-01 1 248436695 248436695 C T OR2T33 Missense_Mutation p.R141K 0.20 tolerated(0.08) benign(0.044) TCGA-DX-A3UF-01 1 248525837 248525837 C A OR2T4 Missense_Mutation p.P319T 0.15 deleterious(0.02) possibly_damaging(0.725) TCGA-DX-A3UF-01 1 29602257 29602257 C T PTPRU Missense_Mutation p.T481M 0.62 deleterious(0.02) probably_damaging(1) TCGA-DX-A3UF-01 1 54059922 54059922 C T GLIS1 Silent p.K218K 0.66 TCGA-DX-A3UF-01 1 70611568 70611568 T C LRRC40 Missense_Mutation p.N575S 0.19 deleterious(0) probably_damaging(1) TCGA-DX-A3UF-01 2 113513773 113513773 C A CKAP2L Missense_Mutation p.S392I 0.09 deleterious(0.03) possibly_damaging(0.495) TCGA-DX-A3UF-01 2 120195113 120195113 G A TMEM37 3'UTR 0.31 TCGA-DX-A3UF-01 2 73160999 73160999 G A EMX1 Silent p.K263K 0.17 TCGA-DX-A3UF-01 2 86693527 86693527 C T KDM3A Missense_Mutation p.S347F 0.62 deleterious_low_confidence(0.04) benign(0.309) TCGA-DX-A3UF-01 3 140401655 140401655 C A TRIM42 Silent p.R231R 0.10 TCGA-DX-A3UF-01 3 25832990 25832990 T C OXSM Missense_Mutation p.V160A 0.12 deleterious(0.04) possibly_damaging(0.659) TCGA-DX-A3UF-01 3 38354512 38354512 T C SLC22A14 Missense_Mutation p.W323R 0.48 deleterious(0) probably_damaging(1) TCGA-DX-A3UF-01 3 52255778 52255778 C T TLR9 Missense_Mutation p.A1006T 0.14 tolerated(0.07) benign(0.144) TCGA-DX-A3UF-01 4 184431587 184431587 G A ING2 Missense_Mutation p.E109K 0.29 deleterious(0) probably_damaging(0.956) TCGA-DX-A3UF-01 5 131996410 131996410 G T IL13 3'UTR 0.34 TCGA-DX-A3UF-01 5 139893030 139893030 C T ANKHD1 Missense_Mutation p.A1428V 0.16 possibly_damaging(0.499) TCGA-DX-A3UF-01 6 137330519 137330519 T G IL20RA Missense_Mutation p.M172L 0.08 tolerated(0.8) benign(0.046) TCGA-DX-A3UF-01 6 160526399 160526399 A G IGF2R 3'UTR 0.09 TCGA-DX-A3UF-01 7 100609667 100609667 T C MUC3A Missense_Mutation p.V800A 0.07 tolerated(0.23) benign(0.066) TCGA-DX-A3UF-01 7 100877561 100877561 G C CLDN15 Missense_Mutation p.A127G 0.53 tolerated(0.3) benign(0.06) TCGA-DX-A3UF-01 7 87797524 87797524 T C ADAM22 Missense_Mutation p.I755T 0.37 tolerated(0.19) benign(0.083) TCGA-DX-A3UF-01 8 110412352 110412352 C A PKHD1L1 Missense_Mutation p.R354S 0.48 tolerated(0.67) benign(0.017) TCGA-DX-A3UF-01 8 2044184 2044184 C A MYOM2 Silent p.P741P 0.44 TCGA-DX-A3UF-01 8 38285564 38285564 G A FGFR1 Missense_Mutation p.H197Y 0.39 tolerated(1) probably_damaging(0.936) TCGA-DX-A3UF-01 9 125611809 125611809 A T RC3H2 3'UTR 0.08 TCGA-DX-A3UF-01 9 136340690 136340690 C T SLC2A6 Silent p.A202A 0.23 TCGA-DX-A3UF-01 9 136402660 136402660 T A ADAMTSL2 Missense_Mutation p.L75Q 0.09 deleterious(0) probably_damaging(1) TCGA-DX-A3UF-01 9 139935042 139935042 C T NPDC1 Missense_Mutation p.R211H 0.47 deleterious(0) probably_damaging(0.979) TCGA-DX-A3UF-01 9 3829452 3829452 G A GLIS3 Silent p.Y838Y 0.38 TCGA-DX-A3UF-01 9 6329463 6329463 C T TPD52L3 3'UTR 0.56 TCGA-DX-A3UF-01 9 95013076 95013076 T C IARS Missense_Mutation p.N783S 0.44 tolerated(0.13) benign(0.271) TCGA-DX-A3UF-01 X 129373570 129373570 G C ZNF280C Missense_Mutation p.A160G 0.03 tolerated(0.09) benign(0.033) TCGA-DX-A3UF-01 X 151123005 151123005 G C GABRE 3'UTR 0.53 TCGA-DX-A3UF-01 X 2825187 2825187 G A ARSD 3'UTR 0.21 TCGA-DX-A3UF-01 X 41095154 41095154 A C USP9X 3'UTR 0.04 TCGA-DX-A3UF-01 X 48779843 48779843 T G OTUD5 3'UTR 0.63 TCGA-DX-A3UF-01 X 51639866 51639866 T A MAGED1 Missense_Mutation p.L428Q 0.15 deleterious_low_confidence(0) unknown(0) TCGA-DX-A3UF-01 X 70320988 70320988 G T FOXO4 Missense_Mutation p.G303V 0.15 tolerated(0.09) benign(0.115) TCGA-DX-A48J-01 10 26310463 26310463 C T MYO3A Missense_Mutation p.T206I 0.62 deleterious(0) possibly_damaging(0.493) TCGA-DX-A48J-01 10 33140795 33140795 C T C10ORF68 Missense_Mutation p.T562I 0.13 deleterious(0.03) benign(0.086) TCGA-DX-A48J-01 11 2909487 2909487 A G SLC22A18AS Missense_Mutation p.F229L 0.07 tolerated_low_confidence(0.21) benign(0.294) TCGA-DX-A48J-01 11 68748449 68748449 G C MRGPRD Missense_Mutation p.Q3E 0.07 tolerated(0.25) benign(0.005) TCGA-DX-A48J-01 12 129694177 129694177 G A TMEM132D Missense_Mutation p.T444M 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A48J-01 12 46299737 46299737 T C ARID2 3'UTR 0.09 TCGA-DX-A48J-01 16 21108691 21108691 C G DNAH3 Missense_Mutation p.E884Q 0.36 deleterious(0.04) benign(0.363) TCGA-DX-A48J-01 16 31336917 31336917 C T ITGAM Missense_Mutation p.H869Y 0.08 deleterious(0.03) benign(0.175) TCGA-DX-A48J-01 17 43924079 43924079 G A SPPL2C Missense_Mutation p.G603S 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.814) TCGA-DX-A48J-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.89 tolerated(0.11) benign(0.308) TCGA-DX-A48J-01 19 19656289 19656289 C T CILP2 Nonsense_Mutation p.R979* 0.06 TCGA-DX-A48J-01 19 44270819 44270819 A G KCNN4 3'UTR 0.78 TCGA-DX-A48J-01 1 1103249 1103249 C T MIR200A RNA 0.86 TCGA-DX-A48J-01 1 149288120 149288120 C T RP11-403I13.8 RNA 0.12 TCGA-DX-A48J-01 1 169510957 169510957 T C F5 Missense_Mutation p.E1124G 0.40 deleterious(0.05) benign(0.104) TCGA-DX-A48J-01 1 178063820 178063820 C T RASAL2 Missense_Mutation p.R65W 0.48 deleterious_low_confidence(0) benign(0.157) TCGA-DX-A48J-01 20 23351506 23351506 T C GZF1 3'UTR 0.30 TCGA-DX-A48J-01 2 220045810 220045810 G T FAM134A Missense_Mutation p.V223L 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-DX-A48J-01 3 69244389 69244389 C T FRMD4B Missense_Mutation p.R454Q 0.40 tolerated(0.07) probably_damaging(0.973) TCGA-DX-A48J-01 4 155747999 155747999 C T RBM46 Intron 0.06 TCGA-DX-A48J-01 5 108672768 108672768 G A PJA2 3'UTR 0.07 TCGA-DX-A48J-01 5 169309787 169309787 A G FAM196B Silent p.N372N 0.11 TCGA-DX-A48J-01 6 52849261 52849261 C A GSTA4 Splice_Site p.X138_splice 0.83 TCGA-DX-A48J-01 9 84607494 84607494 C T SPATA31D1 Silent p.P703P 0.05 TCGA-DX-A48J-01 9 89561973 89561973 G A GAS1 5'UTR 0.13 TCGA-DX-A48K-01 11 132307146 132307146 C T OPCML Missense_Mutation p.D212N 0.47 tolerated(0.05) probably_damaging(0.992) TCGA-DX-A48K-01 11 233415 233415 G A SIRT3 Missense_Mutation p.A134V 0.30 deleterious(0.03) benign(0.001) TCGA-DX-A48K-01 12 45567092 45567092 C T PLEKHA8P1 RNA 0.13 TCGA-DX-A48K-01 14 23884643 23884645 CCT - MYH7 In_Frame_Del p.E1743del 0.32 TCGA-DX-A48K-01 14 71511871 71511871 T A PCNX Missense_Mutation p.Y1297N 0.36 deleterious(0) probably_damaging(0.979) TCGA-DX-A48K-01 15 45409411 45409411 C T DUOXA2 Missense_Mutation p.S226F 0.32 deleterious(0) possibly_damaging(0.774) TCGA-DX-A48K-01 15 48634189 48634190 TG - DUT Intron 0.17 TCGA-DX-A48K-01 17 11833320 11833320 G A DNAH9 Silent p.Q4005Q 0.11 TCGA-DX-A48K-01 17 15234844 15234844 G A TEKT3 Missense_Mutation p.T20I 0.06 tolerated(0.34) benign(0.128) TCGA-DX-A48K-01 17 15554817 15554817 G A RP11-385D13.1 Missense_Mutation p.S36L 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.65) TCGA-DX-A48K-01 17 18315401 18315401 T G RP1-37N7.3 RNA 0.22 TCGA-DX-A48K-01 17 20451635 20451635 G A RP11-434D2.3 RNA 0.20 TCGA-DX-A48K-01 17 79894067 79894067 C T PYCR1 Missense_Mutation p.V24I 0.17 tolerated(0.64) benign(0) TCGA-DX-A48K-01 19 7976147 7976147 G A MAP2K7 Missense_Mutation p.D290N 0.23 deleterious(0.01) benign(0.011) TCGA-DX-A48K-01 1 182353691 182353691 C T GLUL Missense_Mutation p.R324H 0.33 deleterious(0.03) benign(0.257) TCGA-DX-A48K-01 1 223716526 223716526 G T CAPN8 Missense_Mutation p.L656I 0.38 benign(0.076) TCGA-DX-A48K-01 1 225685267 225685268 - A ENAH 3'UTR 0.24 TCGA-DX-A48K-01 1 37270577 37270577 C T GRIK3 Intron 0.16 TCGA-DX-A48K-01 1 7995073 7995073 C T TNFRSF9 Missense_Mutation p.G182R 0.28 deleterious(0.04) benign(0.132) TCGA-DX-A48K-01 21 43166794 43166794 G A RIPK4 Nonsense_Mutation p.R271* 0.06 TCGA-DX-A48K-01 21 46951687 46951687 A T SLC19A1 Missense_Mutation p.S189T 0.36 tolerated(0.27) possibly_damaging(0.859) TCGA-DX-A48K-01 22 45719209 45719209 G A FAM118A Silent p.E67E 0.21 TCGA-DX-A48K-01 22 51237643 51237643 C G RPL23AP82 RNA 0.38 TCGA-DX-A48K-01 2 88828633 88828633 C T TEX37 Missense_Mutation p.P62S 0.34 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-DX-A48K-01 4 130030691 130030691 C T C4orf33 Missense_Mutation p.L120F 0.54 deleterious(0.01) possibly_damaging(0.804) TCGA-DX-A48K-01 4 154626356 154626356 T C TLR2 Missense_Mutation p.M766T 0.50 tolerated(0.6) benign(0) TCGA-DX-A48K-01 5 140176057 140176057 C T PCDHA2 Missense_Mutation p.A503V 0.27 deleterious_low_confidence(0.03) benign(0.237) TCGA-DX-A48K-01 6 144144864 144144864 C T PHACTR2 3'UTR 0.29 TCGA-DX-A48K-01 6 27368642 27368642 T C ZNF391 Missense_Mutation p.Y165H 0.30 deleterious(0.02) possibly_damaging(0.774) TCGA-DX-A48K-01 7 21553212 21553212 G A SP4 3'UTR 0.28 TCGA-DX-A48K-01 8 3087653 3087653 G A CSMD1 Silent p.D1418D 0.34 TCGA-DX-A48K-01 9 116059948 116059948 C T RNF183 Missense_Mutation p.V173I 0.39 tolerated(0.55) benign(0.015) TCGA-DX-A48K-01 X 109445723 109445723 T C AMMECR1 Silent p.K247K 0.11 TCGA-DX-A48K-01 X 36337408 36337408 C T CXorf30 Missense_Mutation p.P256L 0.57 tolerated(1) benign(0) TCGA-DX-A48L-01 10 103771512 103771512 G T C10orf76 Missense_Mutation p.Q267K 0.32 tolerated(0.32) benign(0.01) TCGA-DX-A48L-01 10 5046097 5046097 C T AKR1C2 5'UTR 0.08 TCGA-DX-A48L-01 11 134241002 134241002 C A GLB1L2 Nonsense_Mutation p.S439* 0.92 TCGA-DX-A48L-01 11 61113888 61113888 C T DAK Silent p.I547I 0.49 TCGA-DX-A48L-01 11 68839473 68839473 G A TPCN2 Missense_Mutation p.G348E 0.48 tolerated(0.37) benign(0.001) TCGA-DX-A48L-01 12 29813819 29813819 C T TMTC1 Intron 0.05 TCGA-DX-A48L-01 12 50503860 50503860 G C GPD1 3'UTR 0.37 TCGA-DX-A48L-01 12 53808943 53808943 T C SP1 3'Flank 0.06 TCGA-DX-A48L-01 13 25171259 25171259 A T RP11-556N21.1 RNA 0.22 TCGA-DX-A48L-01 13 48954327 48954328 AT - RB1 Frame_Shift_Del p.M484Vfs*8 0.51 TCGA-DX-A48L-01 13 50590789 50590789 G T TRIM13 3'Flank 0.18 TCGA-DX-A48L-01 14 23586911 23586911 G A CEBPE Missense_Mutation p.R211W 0.52 deleterious(0) probably_damaging(0.996) TCGA-DX-A48L-01 14 23818512 23818512 A G SLC22A17 Silent p.L165L 0.59 TCGA-DX-A48L-01 14 24842348 24842348 A T NFATC4 Intron 0.42 TCGA-DX-A48L-01 14 50952895 50952895 T C MAP4K5 Missense_Mutation p.I62V 0.32 tolerated(0.19) benign(0.108) TCGA-DX-A48L-01 15 20666508 20666508 C T HERC2P3 RNA 0.24 TCGA-DX-A48L-01 16 18875022 18875022 C T SMG1 Silent p.K1215K 0.44 TCGA-DX-A48L-01 16 2159518 2159520 CCG - PKD1 In_Frame_Del p.A1883del 0.37 TCGA-DX-A48L-01 17 10295933 10295933 C T MYH8 Missense_Mutation p.E1832K 0.06 deleterious(0) possibly_damaging(0.533) TCGA-DX-A48L-01 17 12852522 12852522 C T ARHGAP44 Silent p.C309C 0.05 TCGA-DX-A48L-01 17 656793 656793 T C GEMIN4 5'Flank 0.96 TCGA-DX-A48L-01 17 7592045 7592045 C - WRAP53 Frame_Shift_Del p.H28Tfs*5 0.50 TCGA-DX-A48L-01 17 7683569 7683569 C A DNAH2 Silent p.I1939I 0.03 TCGA-DX-A48L-01 17 77681427 77681427 T C CTD-2116F7.1 RNA 0.09 TCGA-DX-A48L-01 17 8138233 8138233 T C CTC1 Missense_Mutation p.H484R 0.03 tolerated(0.15) benign(0.188) TCGA-DX-A48L-01 18 20596862 20596862 G T RBBP8 Missense_Mutation p.G810V 0.17 deleterious(0) probably_damaging(0.965) TCGA-DX-A48L-01 18 736829 736829 T A YES1 Missense_Mutation p.N424Y 0.56 deleterious(0) probably_damaging(0.929) TCGA-DX-A48L-01 19 33487092 33487092 G A RHPN2 Silent p.H420H 0.20 TCGA-DX-A48L-01 19 50249932 50249932 T C TSKS Missense_Mutation p.K263E 0.19 tolerated(0.07) possibly_damaging(0.539) TCGA-DX-A48L-01 19 58118456 58118456 C T ZNF530 Silent p.C521C 0.06 TCGA-DX-A48L-01 1 14106018 14106018 T G PRDM2 Silent p.T576T 0.43 TCGA-DX-A48L-01 1 158687805 158687805 A T OR6K3 Missense_Mutation p.I34N 0.09 deleterious(0) possibly_damaging(0.903) TCGA-DX-A48L-01 1 196695646 196695646 T C CFH Silent p.N640N 0.41 TCGA-DX-A48L-01 1 228520994 228520994 C T OBSCN Missense_Mutation p.R6233C 0.36 probably_damaging(0.992) TCGA-DX-A48L-01 1 236343299 236343299 G C GPR137B Missense_Mutation p.D270H 0.46 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A48L-01 1 38511693 38511693 C T POU3F1 Silent p.V241V 0.50 TCGA-DX-A48L-01 1 40236294 40236294 C T OXCT2 Missense_Mutation p.G212R 0.17 deleterious(0) benign(0.364) TCGA-DX-A48L-01 20 42355125 42355125 T A GTSF1L Missense_Mutation p.E70D 0.09 tolerated(0.49) probably_damaging(0.996) TCGA-DX-A48L-01 20 44596263 44596263 G A ZNF335 Silent p.A275A 0.15 TCGA-DX-A48L-01 20 55093355 55093355 T G RTFDC1 3'UTR 0.54 TCGA-DX-A48L-01 2 166245346 166245346 T A SCN2A Missense_Mutation p.F1677Y 0.48 deleterious(0.01) possibly_damaging(0.761) TCGA-DX-A48L-01 2 207173373 207173373 T C ZDBF2 Missense_Mutation p.F1374S 0.96 tolerated(0.12) benign(0.307) TCGA-DX-A48L-01 2 70441617 70441617 T - TIA1 Frame_Shift_Del p.I300Lfs*89 0.41 TCGA-DX-A48L-01 3 187896990 187896990 T C AC022498.1 Missense_Mutation p.F7L 0.52 benign(0.302) TCGA-DX-A48L-01 3 195513948 195513948 G A MUC4 Silent p.H1501H 0.26 TCGA-DX-A48L-01 3 39225232 39225232 G T XIRP1 3'UTR 0.25 TCGA-DX-A48L-01 4 123175371 123175371 G A KIAA1109 Missense_Mutation p.D1982N 0.13 possibly_damaging(0.543) TCGA-DX-A48L-01 4 82348407 82348407 C G RASGEF1B 3'UTR 0.22 TCGA-DX-A48L-01 4 86907 86907 G T Z95704.2 RNA 0.88 TCGA-DX-A48L-01 5 169026018 169026018 A G SPDL1 Silent p.R393R 0.07 TCGA-DX-A48L-01 5 176025351 176025351 G A GPRIN1 Silent p.G495G 0.52 TCGA-DX-A48L-01 5 39382965 39382965 A G DAB2 Missense_Mutation p.F366L 0.07 tolerated(1) benign(0.001) TCGA-DX-A48L-01 6 163989858 163989858 C T QKI Intron 0.50 TCGA-DX-A48L-01 6 52957553 52957553 C T FBXO9 Missense_Mutation p.T275I 0.13 deleterious(0) possibly_damaging(0.623) TCGA-DX-A48L-01 6 66045003 66045003 C G EYS Missense_Mutation p.D546H 0.27 tolerated(0.14) benign(0.001) TCGA-DX-A48L-01 7 143417912 143417912 C T FAM115C Intron 0.84 TCGA-DX-A48L-01 8 110456116 110456116 C T PKHD1L1 Silent p.L1592L 0.55 TCGA-DX-A48L-01 9 110093363 110093364 - C RAD23B 3'UTR 0.25 TCGA-DX-A48L-01 9 136897057 136897057 C T BRD3 3'UTR 0.55 TCGA-DX-A48L-01 9 87285559 87285559 G A NTRK2 5'UTR 0.41 TCGA-DX-A48L-01 X 135827388 135827388 C A ARHGEF6 Missense_Mutation p.K151N 0.18 deleterious_low_confidence(0) possibly_damaging(0.459) TCGA-DX-A48L-01 X 148074386 148074386 T C AFF2 3'UTR 0.12 TCGA-DX-A48L-01 X 31515003 31515003 G A DMD Missense_Mutation p.L2817F 0.44 possibly_damaging(0.765) TCGA-DX-A48L-01 X 50213682 50213682 G A DGKK RNA 0.21 TCGA-DX-A48L-01 X 69646531 69646531 G A GDPD2 Missense_Mutation p.A166T 0.10 tolerated(0.09) benign(0.023) TCGA-DX-A48L-01 X 70823943 70823943 G A ACRC Silent p.S272S 0.18 TCGA-DX-A48N-01 10 98363808 98363808 T A PIK3AP1 Splice_Site p.X724_splice 0.24 TCGA-DX-A48N-01 11 1651420 1651420 G T KRTAP5-5 Missense_Mutation p.G117V 0.49 deleterious_low_confidence(0) unknown(0) TCGA-DX-A48N-01 11 66101439 66101439 C A RIN1 Silent p.R514R 0.41 TCGA-DX-A48N-01 12 117723944 117723944 G A NOS1 Missense_Mutation p.R419C 0.09 deleterious(0) probably_damaging(0.993) TCGA-DX-A48N-01 12 82872802 82872802 G C METTL25 Nonstop_Mutation p.*604Sext*13 0.38 TCGA-DX-A48N-01 13 101264682 101264682 T C TMTC4 Silent p.A678A 0.58 TCGA-DX-A48N-01 14 106303335 106303335 G A IGHD 3'UTR 0.07 TCGA-DX-A48N-01 14 21250610 21250610 T A RNASE6 3'UTR 0.14 TCGA-DX-A48N-01 14 94772438 94772438 G A SERPINA6 Silent p.I334I 0.38 TCGA-DX-A48N-01 15 29346408 29346408 C T APBA2 Silent p.D107D 0.47 TCGA-DX-A48N-01 15 42154053 42154053 C T SPTBN5 Silent p.A2539A 0.50 TCGA-DX-A48N-01 15 69740579 69740579 C G KIF23 3'UTR 0.19 TCGA-DX-A48N-01 16 706825 706825 G A WDR90 Missense_Mutation p.V766M 0.07 deleterious(0.02) benign(0.181) TCGA-DX-A48N-01 16 80654799 80654799 C T CDYL2 Missense_Mutation p.A290T 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-DX-A48N-01 17 2996032 2996032 A G OR1D2 Missense_Mutation p.S87P 0.06 deleterious(0.03) benign(0.016) TCGA-DX-A48N-01 17 34344871 34344871 G A CCL23 Missense_Mutation p.R22W 0.14 tolerated(0.11) benign(0.005) TCGA-DX-A48N-01 17 40065259 40065259 A C ACLY Missense_Mutation p.L200R 0.15 deleterious(0) probably_damaging(0.96) TCGA-DX-A48N-01 19 15989331 15989331 C T CYP4F2 3'UTR 0.09 TCGA-DX-A48N-01 19 2714572 2714572 G T DIRAS1 3'UTR 0.08 TCGA-DX-A48N-01 19 2714599 2714599 G C DIRAS1 3'UTR 0.10 TCGA-DX-A48N-01 19 41850691 41850691 C G TGFB1 Missense_Mutation p.D199H 0.19 deleterious(0) probably_damaging(0.943) TCGA-DX-A48N-01 19 53208629 53208629 T G ZNF611 Missense_Mutation p.H560P 0.49 deleterious(0) probably_damaging(0.999) TCGA-DX-A48N-01 19 7806402 7806402 A T CD209 3'UTR 0.37 TCGA-DX-A48N-01 19 9088788 9088788 C A MUC16 Missense_Mutation p.M1009I 0.07 unknown(0) TCGA-DX-A48N-01 1 10719966 10719966 A T CASZ1 Missense_Mutation p.V378D 0.47 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-DX-A48N-01 1 171672557 171672557 G T VAMP4 3'UTR 0.09 TCGA-DX-A48N-01 1 171763629 171763629 C G METTL13 Missense_Mutation p.S596C 0.07 deleterious(0.02) possibly_damaging(0.563) TCGA-DX-A48N-01 1 197127005 197127042 CACAAGGGCTGGGCTAGACTTTACAGTTTACACACACA TCACAAGGGCTGGGCTAGACTTTACAGTTTACACACAC ZBTB41 3'UTR 0.10 TCGA-DX-A48N-01 1 22204712 22204712 G A HSPG2 Silent p.S884S 0.53 TCGA-DX-A48N-01 1 47074427 47074427 G A MOB3C 3'UTR 0.38 TCGA-DX-A48N-01 1 6209365 6209365 C T CHD5 Missense_Mutation p.V368I 0.46 deleterious(0.01) possibly_damaging(0.832) TCGA-DX-A48N-01 20 35220888 35220888 G A TGIF2 3'UTR 0.43 TCGA-DX-A48N-01 20 60791718 60791718 G A HRH3 Missense_Mutation p.R228C 0.30 deleterious(0) probably_damaging(0.999) TCGA-DX-A48N-01 20 61143851 61143851 C T C20orf166 5'Flank 0.13 TCGA-DX-A48N-01 20 62375262 62375265 AATA - ZBTB46 3'UTR 0.08 TCGA-DX-A48N-01 21 15481348 15481348 A G LIPI Missense_Mutation p.L471P 0.41 deleterious(0) probably_damaging(0.982) TCGA-DX-A48N-01 2 201756971 201756971 G A NIF3L1 Missense_Mutation p.R102H 0.08 tolerated(0.15) benign(0.033) TCGA-DX-A48N-01 2 242146995 242146995 A G ANO7 Silent p.E383E 0.36 TCGA-DX-A48N-01 4 121958270 121958270 C T NDNF Missense_Mutation p.V286I 0.17 tolerated(0.44) benign(0.079) TCGA-DX-A48N-01 4 38830851 38830851 T C TLR6 Missense_Mutation p.R82G 0.04 tolerated(0.05) benign(0.103) TCGA-DX-A48N-01 4 46067556 46067556 G - GABRG1 Frame_Shift_Del p.R123Vfs*2 0.29 TCGA-DX-A48N-01 4 619722 619722 G A PDE6B Missense_Mutation p.V103M 0.34 tolerated(0.11) benign(0.089) TCGA-DX-A48N-01 5 129241142 129241142 C T CHSY3 Missense_Mutation p.S207F 0.23 deleterious(0) probably_damaging(0.979) TCGA-DX-A48N-01 5 162891728 162891728 G C HMMR Splice_Site p.X49_splice 0.16 TCGA-DX-A48N-01 5 90055265 90055265 G C GPR98 Missense_Mutation p.E3994Q 0.38 probably_damaging(0.982) TCGA-DX-A48N-01 6 108616232 108616232 C G LACE1 5'UTR 0.31 TCGA-DX-A48N-01 6 146207637 146207637 C T SHPRH 3'UTR 0.04 TCGA-DX-A48N-01 6 25479400 25479400 C T LRRC16A Intron 0.05 TCGA-DX-A48N-01 6 26466202 26466202 G A BTN2A1 Splice_Site p.X319_splice 0.47 TCGA-DX-A48N-01 6 97561857 97561857 G A KLHL32 Missense_Mutation p.V276I 0.09 tolerated(0.3) benign(0.002) TCGA-DX-A48N-01 9 115421982 115421982 T C KIAA1958 Missense_Mutation p.F595S 0.11 deleterious(0.01) probably_damaging(0.961) TCGA-DX-A48N-01 9 34723940 34723940 C G FAM205A Missense_Mutation p.W1099C 0.07 deleterious(0.01) possibly_damaging(0.668) TCGA-DX-A48N-01 9 69218548 69218549 - T CBWD6 Frame_Shift_Ins p.L260Tfs*12 0.18 TCGA-DX-A48N-01 9 71433439 71433439 G A PIP5K1B 5'UTR 0.03 TCGA-DX-A48N-01 9 74298320 74298320 C T TMEM2 3'UTR 0.52 TCGA-DX-A48N-01 X 73044562 73044562 G A XIST RNA 0.08 TCGA-DX-A48N-01 X 9711638 9711638 C T GPR143 Missense_Mutation p.R245Q 0.47 deleterious(0) probably_damaging(0.997) TCGA-DX-A48O-01 10 117059564 117059564 C A ATRNL1 Silent p.G812G 0.87 TCGA-DX-A48O-01 10 134755529 134755529 G A TTC40 Silent p.S43S 0.74 TCGA-DX-A48O-01 10 135350749 135350749 C A CYP2E1 Missense_Mutation p.P384T 0.79 deleterious(0) probably_damaging(0.956) TCGA-DX-A48O-01 10 17199734 17199734 G A TRDMT1 Missense_Mutation p.A198V 0.04 tolerated(0.24) benign(0.024) TCGA-DX-A48O-01 10 5436364 5436364 C T TUBAL3 Missense_Mutation p.G153S 0.21 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-DX-A48O-01 10 81680246 81680246 A T MBL1P RNA 0.83 TCGA-DX-A48O-01 11 4409555 4409555 T C TRIM21 Missense_Mutation p.H237R 0.78 tolerated(0.61) benign(0) TCGA-DX-A48O-01 11 6569107 6569107 A G DNHD1 Missense_Mutation p.S2248G 0.90 benign(0.003) TCGA-DX-A48O-01 12 104054498 104054498 G C STAB2 Missense_Mutation p.R609T 0.42 tolerated(0.58) possibly_damaging(0.532) TCGA-DX-A48O-01 12 70760524 70760524 C T KCNMB4 Missense_Mutation p.L4F 0.09 tolerated(0.14) benign(0.084) TCGA-DX-A48O-01 12 7640492 7640492 C A CD163 Nonsense_Mutation p.G538* 0.51 TCGA-DX-A48O-01 13 115092650 115092650 A G CHAMP1 3'UTR 0.43 TCGA-DX-A48O-01 15 20739541 20739541 C A GOLGA6L6 Nonsense_Mutation p.E737* 0.32 TCGA-DX-A48O-01 15 65982790 65982790 C T DENND4A Nonsense_Mutation p.W1380* 0.43 TCGA-DX-A48O-01 15 73022025 73022025 G A BBS4 Silent p.K237K 0.38 TCGA-DX-A48O-01 15 83328314 83328314 A C AP3B2 Nonstop_Mutation p.*1083Gext*16 0.50 TCGA-DX-A48O-01 16 19127831 19127831 C G ITPRIPL2 3'UTR 0.71 TCGA-DX-A48O-01 17 37922593 37922593 G A IKZF3 Missense_Mutation p.P327L 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A48O-01 17 47004910 47004910 G A UBE2Z 3'UTR 0.05 TCGA-DX-A48O-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.79 tolerated(0.1) benign(0.438) TCGA-DX-A48O-01 18 32822725 32822725 G A ZNF397 Silent p.Q97Q 0.46 TCGA-DX-A48O-01 19 19734973 19734973 A G LPAR2 3'UTR 0.09 TCGA-DX-A48O-01 19 2426192 2426192 G C TMPRSS9 3'UTR 0.47 TCGA-DX-A48O-01 19 50474618 50474618 G A SIGLEC16 RNA 0.72 TCGA-DX-A48O-01 19 55144183 55144183 C A LILRB1 Silent p.P310P 0.06 TCGA-DX-A48O-01 1 13428 13428 T C DDX11L1 RNA 0.13 TCGA-DX-A48O-01 1 156043513 156043513 T G MEX3A 3'UTR 0.35 TCGA-DX-A48O-01 1 156043531 156043531 T G MEX3A 3'UTR 0.37 TCGA-DX-A48O-01 1 156316781 156316781 A - TSACC 3'UTR 0.25 TCGA-DX-A48O-01 1 161641251 161641251 C T FCGR2B Missense_Mutation p.T68I 0.10 deleterious(0.02) possibly_damaging(0.898) TCGA-DX-A48O-01 1 161726620 161726639 GTATGGTGAACAGTGCTCTT - DUSP12 Frame_Shift_Del p.Y303Wfs*2 0.19 TCGA-DX-A48O-01 1 186648506 186648506 C A PTGS2 Missense_Mutation p.Q39H 0.28 tolerated(0.25) benign(0) TCGA-DX-A48O-01 1 197024914 197024914 A G F13B Missense_Mutation p.Y429H 0.32 tolerated(0.62) benign(0.173) TCGA-DX-A48O-01 1 208200207 208200207 T C PLXNA2 3'UTR 0.31 TCGA-DX-A48O-01 1 237863631 237863631 G A RYR2 Silent p.Q3077Q 0.35 TCGA-DX-A48O-01 1 238048788 238048788 T G ZP4 Silent p.R355R 0.26 TCGA-DX-A48O-01 1 29444544 29444544 G A EPB41 3'UTR 0.54 TCGA-DX-A48O-01 1 74648303 74648303 T A LRRIQ3 Silent p.I164I 0.39 TCGA-DX-A48O-01 20 10030397 10030397 G T ANKEF1 Nonsense_Mutation p.E394* 0.40 TCGA-DX-A48O-01 20 32358089 32358089 C T ZNF341 Missense_Mutation p.A531V 0.07 tolerated(0.09) benign(0.144) TCGA-DX-A48O-01 21 43522514 43522514 T C C21orf128 3'UTR 0.31 TCGA-DX-A48O-01 21 47848501 47848501 C T PCNT Nonsense_Mutation p.Q2563* 0.55 TCGA-DX-A48O-01 22 18762697 18762697 A C GGT3P RNA 0.23 TCGA-DX-A48O-01 22 19864517 19864517 C T TXNRD2 Intron 0.07 TCGA-DX-A48O-01 22 19864694 19864694 C G TXNRD2 Missense_Mutation p.E503D 0.05 tolerated(0.3) probably_damaging(1) TCGA-DX-A48O-01 22 32754084 32754084 C A RFPL3 Missense_Mutation p.T9N 0.40 deleterious_low_confidence(0.03) benign(0.012) TCGA-DX-A48O-01 2 188349667 188349667 C T TFPI Missense_Mutation p.G136S 0.48 deleterious(0.02) probably_damaging(0.946) TCGA-DX-A48O-01 2 21231996 21231996 C - APOB Frame_Shift_Del p.E2582Sfs*37 0.96 TCGA-DX-A48O-01 2 21231998 21231998 A T APOB Missense_Mutation p.V2581E 0.96 probably_damaging(0.996) TCGA-DX-A48O-01 2 218924727 218924727 T G CXCR2P1 RNA 0.30 TCGA-DX-A48O-01 2 234621847 234621847 A C UGT1A5 Missense_Mutation p.K70N 0.44 tolerated(0.15) possibly_damaging(0.759) TCGA-DX-A48O-01 2 37483997 37483997 C T PRKD3 Missense_Mutation p.A741T 0.51 deleterious(0) probably_damaging(0.998) TCGA-DX-A48O-01 2 5839758 5839758 C T SOX11 3'UTR 0.82 TCGA-DX-A48O-01 2 88423901 88423901 G A FABP1 Intron 0.52 TCGA-DX-A48O-01 3 113374951 113374951 G C KIAA2018 Missense_Mutation p.P1860A 0.39 benign(0.399) TCGA-DX-A48O-01 3 138121755 138121755 G T MRAS 3'UTR 0.33 TCGA-DX-A48O-01 3 48677609 48677609 G A CELSR3 Missense_Mutation p.R3137C 0.40 tolerated_low_confidence(0.13) benign(0.003) TCGA-DX-A48O-01 3 53218939 53218939 C T PRKCD Silent p.L279L 0.48 TCGA-DX-A48O-01 4 4276392 4276392 C A LYAR Silent p.V178V 0.07 TCGA-DX-A48O-01 4 85672686 85672686 A G WDFY3 Missense_Mutation p.C1975R 0.08 deleterious(0.04) benign(0.379) TCGA-DX-A48O-01 5 138643460 138643460 C G MATR3 Missense_Mutation p.A119G 0.07 deleterious(0.04) probably_damaging(0.956) TCGA-DX-A48O-01 5 140559299 140559299 G A PCDHB8 Missense_Mutation p.V562M 0.02 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-DX-A48O-01 5 140595974 140595974 G T PCDHB13 Missense_Mutation p.G760V 0.42 deleterious_low_confidence(0.01) benign(0.082) TCGA-DX-A48O-01 5 154282137 154282137 C T GEMIN5 Missense_Mutation p.G943E 0.48 deleterious(0) probably_damaging(1) TCGA-DX-A48O-01 5 39119670 39119670 T G FYB Missense_Mutation p.E745D 0.39 tolerated(0.09) possibly_damaging(0.505) TCGA-DX-A48O-01 6 150322718 150322718 C T RAET1K RNA 0.44 TCGA-DX-A48O-01 6 31543603 31543603 C T TNF Missense_Mutation p.R29W 0.86 deleterious(0.02) possibly_damaging(0.896) TCGA-DX-A48O-01 6 32159549 32159549 G C GPSM3 Silent p.A94A 0.11 TCGA-DX-A48O-01 6 73043425 73043425 C G RIMS1 Missense_Mutation p.T1418R 0.10 deleterious(0) probably_damaging(0.972) TCGA-DX-A48O-01 6 86333723 86333723 C G SYNCRIP Missense_Mutation p.Q258H 0.47 deleterious(0) possibly_damaging(0.88) TCGA-DX-A48O-01 7 100364861 100364861 T C ZAN Missense_Mutation p.L1614P 0.40 unknown(0) TCGA-DX-A48O-01 7 130140375 130140375 T - MEST Splice_Site p.X216_splice 0.33 TCGA-DX-A48O-01 7 150325422 150325422 C A GIMAP6 Silent p.G88G 0.50 TCGA-DX-A48O-01 7 44153323 44153323 C A AEBP1 Missense_Mutation p.F980L 0.50 deleterious(0) probably_damaging(0.978) TCGA-DX-A48O-01 7 73117181 73117181 C G STX1A Missense_Mutation p.E224D 0.04 tolerated(0.05) probably_damaging(0.999) TCGA-DX-A48O-01 8 110499030 110499030 A - PKHD1L1 Frame_Shift_Del p.N3288Ifs*2 0.33 TCGA-DX-A48O-01 8 24774755 24774755 G T NEFM Nonsense_Mutation p.E463* 0.47 TCGA-DX-A48O-01 8 48746783 48746783 C T PRKDC Missense_Mutation p.G2708E 0.08 benign(0.073) TCGA-DX-A48O-01 8 72952031 72952031 G A TRPA1 Missense_Mutation p.A688V 0.23 tolerated(0.2) benign(0.006) TCGA-DX-A48O-01 8 75147929 75147929 G A JPH1 3'UTR 0.05 TCGA-DX-A48O-01 9 107266816 107266816 T A OR13F1 Silent p.T91T 0.06 TCGA-DX-A48O-01 9 129646331 129646331 C A ZBTB34 3'UTR 0.43 TCGA-DX-A48O-01 9 32786331 32786331 T G TMEM215 3'UTR 0.49 TCGA-DX-A48O-01 9 71687569 71687569 A C FXN Missense_Mutation p.Y175S 0.40 deleterious(0) probably_damaging(0.966) TCGA-DX-A48O-01 9 79009008 79009008 G T RFK Missense_Mutation p.T27K 0.13 deleterious(0) possibly_damaging(0.799) TCGA-DX-A48O-01 X 103360279 103360279 T A ZCCHC18 3'UTR 0.44 TCGA-DX-A48O-01 X 106803532 106803532 C G FRMPD3 Missense_Mutation p.P303A 0.40 tolerated(0.54) probably_damaging(0.98) TCGA-DX-A48O-01 X 114863597 114863597 A T PLS3 Missense_Mutation p.T109S 0.43 tolerated(0.16) benign(0.242) TCGA-DX-A48O-01 X 132352121 132352121 T A TFDP3 Missense_Mutation p.Q56L 0.39 deleterious(0.04) benign(0.044) TCGA-DX-A48O-01 X 36117934 36117934 A G CHDC2 Missense_Mutation p.M264V 0.48 tolerated(0.28) benign(0.169) TCGA-DX-A48O-01 X 48826534 48826534 G A KCND1 Missense_Mutation p.R49W 0.06 deleterious(0.05) probably_damaging(0.941) TCGA-DX-A48O-01 X 50055558 50055558 G A CCNB3 Missense_Mutation p.D1117N 0.07 deleterious(0.02) possibly_damaging(0.841) TCGA-DX-A48O-01 X 69699100 69699100 G T DLG3 Missense_Mutation p.R502S 0.44 deleterious(0) benign(0.002) TCGA-DX-A48O-01 X 70320816 70320816 A G FOXO4 Missense_Mutation p.N246D 0.10 deleterious(0.03) benign(0.027) TCGA-DX-A48O-01 X 99662489 99662489 G C PCDH19 Silent p.A369A 0.35 TCGA-DX-A48P-01 11 125770453 125770453 T G HYLS1 3'UTR 0.46 TCGA-DX-A48P-01 11 128329994 128329994 C A ETS1 3'UTR 0.13 TCGA-DX-A48P-01 11 2334970 2334970 G A TSPAN32 Silent p.A147A 0.11 TCGA-DX-A48P-01 11 61914294 61914294 G C INCENP Silent p.R708R 0.06 TCGA-DX-A48P-01 11 62298096 62298096 G A AHNAK Missense_Mutation p.P1265S 0.13 probably_damaging(0.999) TCGA-DX-A48P-01 11 62762013 62762013 C A SLC22A8 Splice_Site p.X406_splice 0.13 TCGA-DX-A48P-01 11 64621782 64621782 G A EHD1 3'UTR 0.41 TCGA-DX-A48P-01 11 71276818 71276818 C A KRTAP5-10 Missense_Mutation p.S62Y 0.04 unknown(0) TCGA-DX-A48P-01 11 92531873 92531873 T G FAT3 Silent p.V1898V 0.37 TCGA-DX-A48P-01 12 104359748 104359748 C T TDG 5'UTR 0.16 TCGA-DX-A48P-01 12 120780204 120780204 G T MSI1 3'UTR 0.48 TCGA-DX-A48P-01 12 124337752 124337752 G C DNAH10 Splice_Site p.X1980_splice 0.05 TCGA-DX-A48P-01 12 22688242 22688242 A T C2CD5 Missense_Mutation p.Y43N 0.07 tolerated(0.16) benign(0.081) TCGA-DX-A48P-01 12 92819403 92819404 - T CLLU1 3'UTR 0.32 TCGA-DX-A48P-01 13 111357899 111357899 C G CARS2 Missense_Mutation p.V82L 0.38 deleterious(0) probably_damaging(1) TCGA-DX-A48P-01 13 94482415 94482415 C T GPC6 Nonsense_Mutation p.R110* 0.14 TCGA-DX-A48P-01 14 36840727 36840727 T A DPPA3P2 RNA 0.09 TCGA-DX-A48P-01 14 70490038 70490038 C T SMOC1 Missense_Mutation p.R389C 0.41 deleterious(0) probably_damaging(0.972) TCGA-DX-A48P-01 15 63618489 63618489 C G CA12 Missense_Mutation p.A354P 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.868) TCGA-DX-A48P-01 16 30751413 30751413 A T SRCAP 3'UTR 0.09 TCGA-DX-A48P-01 16 48138079 48138079 A G ABCC12 Silent p.L958L 0.05 TCGA-DX-A48P-01 16 56901059 56901059 C T SLC12A3 Silent p.G120G 0.07 TCGA-DX-A48P-01 16 624230 624230 G A PIGQ Silent p.V52V 0.55 TCGA-DX-A48P-01 17 38975327 38975327 T G KRT10 Missense_Mutation p.H487P 0.10 tolerated_low_confidence(0.33) unknown(0) TCGA-DX-A48P-01 17 40705589 40705589 G A HSD17B1 Missense_Mutation p.R133H 0.12 deleterious(0.02) benign(0.215) TCGA-DX-A48P-01 17 4838202 4838202 C A GP1BA 3'UTR 0.80 TCGA-DX-A48P-01 17 62750187 62750187 A T hsa-mir-6080 RNA 0.07 TCGA-DX-A48P-01 17 73496031 73496031 G C KIAA0195 3'UTR 0.48 TCGA-DX-A48P-01 18 3814090 3814090 G C DLGAP1 Missense_Mutation p.Q381E 0.52 tolerated(0.11) probably_damaging(0.977) TCGA-DX-A48P-01 18 51681492 51681492 C T MBD2 3'UTR 0.31 TCGA-DX-A48P-01 18 56171377 56171377 G T ALPK2 Silent p.I2011I 0.24 TCGA-DX-A48P-01 18 74583683 74583683 G A ZNF236 Missense_Mutation p.R188Q 0.42 deleterious(0.01) probably_damaging(0.914) TCGA-DX-A48P-01 19 19297723 19297723 G A MEF2BNB Silent p.L43L 0.13 TCGA-DX-A48P-01 19 3206314 3206314 C G NCLN Missense_Mutation p.R464G 0.35 deleterious(0) probably_damaging(0.933) TCGA-DX-A48P-01 19 7573142 7573142 A G C19orf45 Silent p.S448S 0.38 TCGA-DX-A48P-01 1 110136548 110136548 C A GNAI3 3'UTR 0.19 TCGA-DX-A48P-01 1 117663697 117663697 G A TRIM45 Missense_Mutation p.P43S 0.49 deleterious(0) probably_damaging(0.978) TCGA-DX-A48P-01 1 149288251 149288251 C T RP11-403I13.8 RNA 0.29 TCGA-DX-A48P-01 1 149288707 149288707 C T RP11-403I13.8 RNA 0.17 TCGA-DX-A48P-01 1 156195368 156195396 ACGGAAGTGCTGGTCCCCGCCTGCCCTCT - PMF1 Intron 0.46 TCGA-DX-A48P-01 1 216172255 216172255 C T USH2A Missense_Mutation p.G2211S 0.39 probably_damaging(0.957) TCGA-DX-A48P-01 1 32936253 32936253 C A ZBTB8B Missense_Mutation p.L10I 0.70 deleterious(0) probably_damaging(0.955) TCGA-DX-A48P-01 1 47398373 47398373 G C CYP4A11 Intron 0.05 TCGA-DX-A48P-01 1 74540359 74540359 T C LRRIQ3 Missense_Mutation p.H328R 0.40 deleterious(0.03) benign(0.029) TCGA-DX-A48P-01 20 19702240 19702240 G A SLC24A3 3'UTR 0.05 TCGA-DX-A48P-01 21 22910710 22910710 A G NCAM2 3'UTR 0.37 TCGA-DX-A48P-01 22 44258312 44258317 CGCGCC - SULT4A1 5'UTR 0.25 TCGA-DX-A48P-01 22 46655314 46655314 G A PKDREJ Silent p.N1302N 0.15 TCGA-DX-A48P-01 2 130739901 130739901 G T RAB6C 3'UTR 0.39 TCGA-DX-A48P-01 2 167144952 167144952 C G SCN9A Missense_Mutation p.A437P 0.39 tolerated(0.06) probably_damaging(0.95) TCGA-DX-A48P-01 2 227985836 227985836 C T COL4A4 Missense_Mutation p.G74D 0.08 probably_damaging(0.997) TCGA-DX-A48P-01 3 119434455 119434455 A G MAATS1 Missense_Mutation p.I183V 0.04 tolerated(0.62) benign(0.002) TCGA-DX-A48P-01 3 129226538 129226538 G T IFT122 Missense_Mutation p.G991V 0.10 tolerated(0.27) benign(0.003) TCGA-DX-A48P-01 3 145788914 145788914 T A PLOD2 Missense_Mutation p.E679V 0.38 deleterious(0.01) benign(0.038) TCGA-DX-A48P-01 3 16630077 16630077 C G DAZL 3'UTR 0.06 TCGA-DX-A48P-01 3 49830600 49830600 C T CDHR4 Missense_Mutation p.V590M 0.16 deleterious(0.04) benign(0.243) TCGA-DX-A48P-01 3 9547832 9547832 G A LHFPL4 Silent p.T154T 0.45 TCGA-DX-A48P-01 4 186997801 186997801 T A TLR3 Missense_Mutation p.F10I 0.40 tolerated(0.21) benign(0.028) TCGA-DX-A48P-01 4 37904015 37904015 G A TBC1D1 Missense_Mutation p.R100H 0.44 tolerated(1) benign(0) TCGA-DX-A48P-01 5 140720410 140720410 C T PCDHGA2 Silent p.G624G 0.13 TCGA-DX-A48P-01 5 23523452 23523452 G T PRDM9 Missense_Mutation p.W312L 0.47 tolerated(0.69) benign(0.001) TCGA-DX-A48P-01 5 52781023 52781023 G - FST Frame_Shift_Del p.L307Yfs*4 0.28 TCGA-DX-A48P-01 6 106960510 106960510 A C AIM1 Silent p.P98P 0.16 TCGA-DX-A48P-01 6 142711416 142711416 C A GPR126 Missense_Mutation p.S415Y 0.23 deleterious(0.02) possibly_damaging(0.564) TCGA-DX-A48P-01 6 76734971 76734971 C T IMPG1 Missense_Mutation p.D168N 0.17 tolerated(0.06) benign(0.278) TCGA-DX-A48P-01 7 39247149 39247149 C A POU6F2 Silent p.T147T 0.31 TCGA-DX-A48P-01 7 4169604 4169604 C T SDK1 Missense_Mutation p.T1335M 0.26 deleterious(0) probably_damaging(0.943) TCGA-DX-A48P-01 7 92731334 92731334 T C SAMD9 Missense_Mutation p.I1359M 0.09 tolerated(0.12) benign(0.075) TCGA-DX-A48P-01 8 126056836 126056837 - T KIAA0196 Frame_Shift_Ins p.T870Nfs*59 0.20 TCGA-DX-A48P-01 8 38067571 38067571 C A BAG4 Missense_Mutation p.H312N 0.38 tolerated(0.09) benign(0.027) TCGA-DX-A48P-01 8 59499075 59499075 G A NSMAF Silent p.T827T 0.38 TCGA-DX-A48P-01 8 67012211 67012211 A G DNAJC5B Missense_Mutation p.N182S 0.44 tolerated(0.6) benign(0.006) TCGA-DX-A48P-01 9 135374153 135374153 C T C9orf171 Silent p.I125I 0.09 TCGA-DX-A48P-01 9 136198995 136199015 CCTCCAGCTCCTGCGCCTTCC - SURF6 In_Frame_Del p.G259_E265del 0.31 TCGA-DX-A48P-01 9 99800278 99800278 G A CTSV Silent p.S16S 0.04 TCGA-DX-A48P-01 X 100871614 100871614 C T ARMCX6 5'UTR 0.05 TCGA-DX-A48P-01 X 135431967 135431967 A G GPR112 Silent p.T2034T 0.13 TCGA-DX-A48P-01 X 45023438 45023438 C G CXorf36 Intron 0.35 TCGA-DX-A48P-01 X 48317079 48317079 C T SLC38A5 3'UTR 0.14 TCGA-DX-A48P-01 X 53115089 53115109 TGACAACAATGAGAGTGCAGA - TSPYL2 In_Frame_Del p.S510_E516del 0.36 TCGA-DX-A48R-01 10 15014543 15014543 A G MEIG1 Missense_Mutation p.K57R 0.45 tolerated(0.16) probably_damaging(0.942) TCGA-DX-A48R-01 10 16975218 16975218 C G CUBN Missense_Mutation p.D1998H 0.42 tolerated(0.1) possibly_damaging(0.657) TCGA-DX-A48R-01 11 124179837 124179837 C T OR8D1 Missense_Mutation p.V276M 0.42 deleterious(0.01) probably_damaging(0.987) TCGA-DX-A48R-01 11 62381818 62381818 C T ROM1 Nonsense_Mutation p.Q227* 0.37 TCGA-DX-A48R-01 11 62381831 62381831 C T ROM1 Missense_Mutation p.S231L 0.33 tolerated(0.07) probably_damaging(0.998) TCGA-DX-A48R-01 11 62381881 62381881 C T ROM1 Missense_Mutation p.L248F 0.34 deleterious(0) probably_damaging(1) TCGA-DX-A48R-01 12 10954758 10954758 C T TAS2R7 Missense_Mutation p.V138M 0.32 tolerated(0.06) benign(0.002) TCGA-DX-A48R-01 14 63269300 63269300 C A KCNH5 Splice_Site p.X524_splice 0.52 TCGA-DX-A48R-01 15 25328601 25328601 C T SNORD116-18 5'Flank 0.50 TCGA-DX-A48R-01 16 61891134 61891134 C A CDH8 Missense_Mutation p.V186F 0.88 deleterious(0) probably_damaging(0.998) TCGA-DX-A48R-01 16 88677733 88677744 GAGCGGGACCGA - ZC3H18 In_Frame_Del p.D424_R427del 0.81 TCGA-DX-A48R-01 17 10432323 10432323 G C MYH2 Missense_Mutation p.S1143C 0.21 deleterious(0.01) probably_damaging(0.933) TCGA-DX-A48R-01 17 10432929 10432929 G C MYH2 Silent p.V1023V 0.20 TCGA-DX-A48R-01 17 10432961 10432961 G C MYH2 Missense_Mutation p.L1013V 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-DX-A48R-01 17 15943771 15943771 T G NCOR1 Silent p.P2239P 0.08 TCGA-DX-A48R-01 17 40556897 40556897 C G PTRF Missense_Mutation p.K327N 0.47 deleterious(0) probably_damaging(0.978) TCGA-DX-A48R-01 17 72767831 72767831 C T NAT9 3'UTR 0.56 TCGA-DX-A48R-01 17 79770102 79770102 C T GCGR Missense_Mutation p.R308W 0.41 deleterious(0) probably_damaging(1) TCGA-DX-A48R-01 17 9760833 9760833 C G GLP2R Missense_Mutation p.F235L 0.25 tolerated(1) benign(0.004) TCGA-DX-A48R-01 17 9760880 9760880 C G GLP2R Missense_Mutation p.S251C 0.24 deleterious(0) probably_damaging(0.995) TCGA-DX-A48R-01 18 35145938 35145938 T C CELF4 5'UTR 0.09 TCGA-DX-A48R-01 18 43571883 43571883 C T PSTPIP2 Missense_Mutation p.G302E 0.47 tolerated(0.1) possibly_damaging(0.603) TCGA-DX-A48R-01 19 14024037 14024037 G A CC2D1A Silent p.A145A 0.41 TCGA-DX-A48R-01 19 38964203 38964203 G A RYR1 Missense_Mutation p.A1318T 0.23 possibly_damaging(0.453) TCGA-DX-A48R-01 19 40421292 40421292 C T FCGBP Missense_Mutation p.G877S 0.20 probably_damaging(1) TCGA-DX-A48R-01 19 46498369 46498369 G T CCDC61 5'Flank 0.27 TCGA-DX-A48R-01 19 50308789 50308789 C A AP2A1 Nonsense_Mutation p.C830* 0.52 TCGA-DX-A48R-01 19 54965619 54965619 C G LENG8 Missense_Mutation p.P146R 0.47 deleterious(0) probably_damaging(1) TCGA-DX-A48R-01 19 9066039 9066039 G A MUC16 Missense_Mutation p.T7136M 0.50 unknown(0) TCGA-DX-A48R-01 1 11596799 11596799 C A PTCHD2 3'UTR 0.92 TCGA-DX-A48R-01 1 143767384 143767385 - T PPIAL4G Frame_Shift_Ins p.I156Dfs*5 0.09 TCGA-DX-A48R-01 1 155290334 155290342 CGCAGCACC - FDPS In_Frame_Del p.A399_P401del 0.43 TCGA-DX-A48R-01 1 17318882 17318882 G A ATP13A2 Missense_Mutation p.P621S 0.10 tolerated(0.09) benign(0.113) TCGA-DX-A48R-01 1 177902396 177902396 C T SEC16B Missense_Mutation p.A926T 0.46 tolerated(0.69) benign(0.011) TCGA-DX-A48R-01 1 183933296 183933296 A T COLGALT2 Intron 0.46 TCGA-DX-A48R-01 1 247769742 247769742 A T OR2G3 Missense_Mutation p.L285F 0.36 deleterious(0.01) probably_damaging(1) TCGA-DX-A48R-01 1 36060270 36060270 G A TFAP2E Missense_Mutation p.R441Q 0.33 deleterious(0.04) benign(0.195) TCGA-DX-A48R-01 1 82455375 82455375 A G LPHN2 Intron 0.48 TCGA-DX-A48R-01 1 90050237 90050237 C A LRRC8B Missense_Mutation p.F676L 0.42 deleterious(0.02) benign(0.015) TCGA-DX-A48R-01 1 91726828 91726828 T C HFM1 3'UTR 0.45 TCGA-DX-A48R-01 20 10625904 10625904 C G JAG1 Missense_Mutation p.R705P 0.38 deleterious(0) possibly_damaging(0.858) TCGA-DX-A48R-01 20 33464462 33464462 A T ACSS2 Missense_Mutation p.E5V 0.29 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-DX-A48R-01 20 43030126 43030126 T - HNF4A Frame_Shift_Del p.N38Kfs*88 0.28 TCGA-DX-A48R-01 20 56090654 56090654 C T CTCFL Intron 0.42 TCGA-DX-A48R-01 21 33371084 33371084 C T HUNK Missense_Mutation p.H578Y 0.49 tolerated_low_confidence(0.1) possibly_damaging(0.642) TCGA-DX-A48R-01 21 47423972 47423972 C T COL6A1 3'UTR 0.17 TCGA-DX-A48R-01 21 47669780 47669780 T A MCM3AP Intron 0.43 TCGA-DX-A48R-01 21 47669799 47669799 T A MCM3AP Intron 0.43 TCGA-DX-A48R-01 22 42537362 42537362 G A NDUFA6-AS1 3'Flank 0.51 TCGA-DX-A48R-01 2 130953765 130953765 G A TUBA3E Silent p.H61H 0.03 TCGA-DX-A48R-01 2 152425138 152425138 G A NEB Silent p.L5876L 0.44 TCGA-DX-A48R-01 2 176044904 176044904 G T ATP5G3 Silent p.I14I 0.20 TCGA-DX-A48R-01 2 179431620 179431620 A G TTN Silent p.D26413D 0.45 TCGA-DX-A48R-01 2 89399506 89399506 G A IGKV1-16 Missense_Mutation p.P66L 0.90 deleterious(0.02) benign(0.213) TCGA-DX-A48R-01 3 148792110 148792110 C T HLTF Missense_Mutation p.A141T 0.29 tolerated(0.74) benign(0.002) TCGA-DX-A48R-01 3 167632987 167632987 C A RP11-298O21.5 RNA 0.57 TCGA-DX-A48R-01 3 170723821 170723821 G A SLC2A2 Missense_Mutation p.A229V 0.54 deleterious(0) possibly_damaging(0.718) TCGA-DX-A48R-01 3 178785423 178785423 C G ZMAT3 Missense_Mutation p.G40R 0.63 tolerated_low_confidence(0.37) benign(0.001) TCGA-DX-A48R-01 6 150141592 150141592 A T LRP11 3'UTR 0.51 TCGA-DX-A48R-01 6 31378924 31378924 A G MICA Missense_Mutation p.Y134C 0.46 tolerated(0.25) probably_damaging(0.996) TCGA-DX-A48R-01 6 41121641 41121641 C T TREML1 Silent p.T77T 0.15 TCGA-DX-A48R-01 6 51930781 51930781 G C PKHD1 Silent p.T291T 0.50 TCGA-DX-A48R-01 6 90388356 90388356 C T MDN1 Missense_Mutation p.R4125Q 0.50 benign(0.337) TCGA-DX-A48R-01 6 99285815 99285815 G T POU3F2 3'UTR 0.35 TCGA-DX-A48R-01 7 38423420 38423420 A C AMPH 3'UTR 0.35 TCGA-DX-A48R-01 7 48314976 48314976 G T ABCA13 Nonsense_Mutation p.E1905* 0.45 TCGA-DX-A48R-01 7 48314977 48314977 A T ABCA13 Missense_Mutation p.E1905V 0.45 possibly_damaging(0.674) TCGA-DX-A48R-01 7 78636524 78636524 T A MAGI2 Splice_Site p.X101_splice 0.22 TCGA-DX-A48R-01 8 68113722 68113722 C T ARFGEF1 Silent p.E1749E 0.61 TCGA-DX-A48R-01 9 125273520 125273520 T C OR1J2 Missense_Mutation p.V147A 0.46 tolerated_low_confidence(0.51) benign(0.012) TCGA-DX-A48R-01 9 129870420 129870420 G A ANGPTL2 Silent p.I197I 0.57 TCGA-DX-A48R-01 9 13223587 13223587 C T MPDZ Silent p.E172E 0.42 TCGA-DX-A48R-01 X 110390987 110390987 G A PAK3 Missense_Mutation p.R136Q 0.92 tolerated(0.17) possibly_damaging(0.511) TCGA-DX-A48R-01 X 63409396 63409396 A G AMER1 3'UTR 0.57 TCGA-DX-A48U-01 10 26505740 26505740 T C GAD2 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.042) TCGA-DX-A48U-01 11 4945061 4945061 T C OR51G1 Missense_Mutation p.Y170C 0.48 deleterious(0) probably_damaging(0.996) TCGA-DX-A48U-01 12 6571921 6571952 CAAGGAGGAGCCCAGAGGAGAGTGGAGACCTT - VAMP1 3'Flank 0.28 TCGA-DX-A48U-01 12 69222659 69222659 T C MDM2 Missense_Mutation p.I211T 0.46 deleterious(0) benign(0.382) TCGA-DX-A48U-01 12 96361681 96361681 A C AMDHD1 3'UTR 0.46 TCGA-DX-A48U-01 13 95056023 95056023 T C GPC6 3'UTR 0.55 TCGA-DX-A48U-01 15 23048137 23048137 T G NIPA1 3'UTR 0.04 TCGA-DX-A48U-01 15 42061794 42061794 A - MGA 3'UTR 0.31 TCGA-DX-A48U-01 16 4625892 4625892 G T C16orf96 Nonsense_Mutation p.E471* 0.54 TCGA-DX-A48U-01 17 41477711 41477711 A G ARL4D 3'UTR 0.59 TCGA-DX-A48U-01 17 60503814 60503814 C T METTL2A Silent p.N119N 0.51 TCGA-DX-A48U-01 17 7578406 7578406 C A TP53 Missense_Mutation p.R175L 0.87 deleterious(0) probably_damaging(0.966) TCGA-DX-A48U-01 18 10773615 10773615 C T PIEZO2 Silent p.P835P 0.45 TCGA-DX-A48U-01 18 12107409 12107409 A G ANKRD62 Missense_Mutation p.K336R 0.08 tolerated(0.16) benign(0) TCGA-DX-A48U-01 19 281377 281377 G A PPAP2C 3'Flank 0.49 TCGA-DX-A48U-01 19 36000841 36000841 G C DMKN Missense_Mutation p.A337G 0.04 tolerated(0.57) unknown(0) TCGA-DX-A48U-01 19 5212070 5212070 G - PTPRS Frame_Shift_Del p.T1654Kfs*59 0.30 TCGA-DX-A48U-01 19 55993959 55993959 T C ZNF628 Missense_Mutation p.S467P 0.83 deleterious(0) probably_damaging(0.959) TCGA-DX-A48U-01 19 55997070 55997070 G T NAT14 5'UTR 0.92 TCGA-DX-A48U-01 1 102462400 102462400 C T OLFM3 5'UTR 0.11 TCGA-DX-A48U-01 1 249109041 249109041 A C SH3BP5L Intron 0.45 TCGA-DX-A48U-01 1 40041574 40041622 TCGCCCACGTACAGGGAGGCCATGGGGTAGCTGCTGGCCGCAGCGTTCA - PABPC4 Frame_Shift_Del p.M1_?17 0.15 TCGA-DX-A48U-01 21 22910430 22910430 C A NCAM2 3'UTR 0.52 TCGA-DX-A48U-01 21 34883664 34883664 C T GART Missense_Mutation p.A737T 0.54 deleterious(0.04) probably_damaging(0.997) TCGA-DX-A48U-01 21 38569952 38569952 C G TTC3 Silent p.V1887V 0.49 TCGA-DX-A48U-01 22 23466830 23466830 G C GNAZ 3'UTR 0.45 TCGA-DX-A48U-01 2 212295769 212295769 A T ERBB4 Missense_Mutation p.N848K 0.48 deleterious(0) probably_damaging(0.997) TCGA-DX-A48U-01 2 27322146 27322146 G C KHK Missense_Mutation p.R216T 0.18 deleterious(0.01) possibly_damaging(0.554) TCGA-DX-A48U-01 2 37872313 37872313 C T CDC42EP3 3'UTR 0.55 TCGA-DX-A48U-01 3 170216674 170216674 C T SLC7A14 Splice_Site p.X181_splice 0.52 TCGA-DX-A48U-01 3 195513615 195513615 A T MUC4 Silent p.G1612G 0.18 TCGA-DX-A48U-01 4 120221759 120221759 C G C4orf3 Missense_Mutation p.A111P 0.39 deleterious_low_confidence(0) unknown(0) TCGA-DX-A48U-01 5 108207846 108207846 G C FER Missense_Mutation p.E286Q 0.35 deleterious(0.01) benign(0.312) TCGA-DX-A48U-01 5 169188536 169188536 G - DOCK2 Frame_Shift_Del p.E821Sfs*9 0.34 TCGA-DX-A48U-01 5 35789750 35789750 G T SPEF2 Intron 0.44 TCGA-DX-A48U-01 6 116542281 116542281 T G NT5DC1 Silent p.P198P 0.45 TCGA-DX-A48U-01 6 151206811 151206811 C G MTHFD1L Missense_Mutation p.A195G 0.46 tolerated(0.48) benign(0.013) TCGA-DX-A48U-01 7 123671907 123671907 T G TMEM229A 3'UTR 0.37 TCGA-DX-A48U-01 7 5104323 5104323 A G RBAK Silent p.R412R 0.39 TCGA-DX-A48U-01 7 99654810 99654810 G T ZSCAN21 Nonsense_Mutation p.E61* 0.54 TCGA-DX-A48U-01 8 100880651 100880651 C G VPS13B Missense_Mutation p.P3809A 0.42 deleterious(0) possibly_damaging(0.822) TCGA-DX-A48U-01 8 143955624 143955624 C G CYP11B1 3'UTR 0.40 TCGA-DX-A48U-01 9 101912649 101912649 T C TGFBR1 3'UTR 0.43 TCGA-DX-A48U-01 9 39178156 39178156 G C CNTNAP3 Nonsense_Mutation p.S247* 0.46 TCGA-DX-A48V-01 10 13043429 13043429 C G CCDC3 Missense_Mutation p.V48L 0.05 deleterious(0.01) possibly_damaging(0.512) TCGA-DX-A48V-01 10 30653860 30653860 C T AL161651.1 3'Flank 0.24 TCGA-DX-A48V-01 11 128681602 128681602 A T FLI1 3'UTR 0.08 TCGA-DX-A48V-01 11 554105 554105 G A LRRC56 Silent p.G486G 0.13 TCGA-DX-A48V-01 11 65272832 65272832 G C MALAT1 RNA 0.46 TCGA-DX-A48V-01 11 65546103 65546103 G A AP5B1 Missense_Mutation p.H621Y 0.47 deleterious(0.02) possibly_damaging(0.877) TCGA-DX-A48V-01 11 82877729 82877729 G T PCF11 Missense_Mutation p.W597L 0.53 deleterious(0) probably_damaging(0.998) TCGA-DX-A48V-01 11 94865110 94865110 G C ENDOD1 3'UTR 0.50 TCGA-DX-A48V-01 12 9229983 9229983 A C A2M Missense_Mutation p.Y1104D 0.91 deleterious(0) probably_damaging(1) TCGA-DX-A48V-01 13 115090959 115090959 C G CHAMP1 Missense_Mutation p.R548G 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A48V-01 14 105268140 105268140 C G ZBTB42 Missense_Mutation p.H202Q 0.52 tolerated(0.11) benign(0.002) TCGA-DX-A48V-01 14 58701147 58701147 T C ACTR10 Missense_Mutation p.Y378H 0.04 deleterious(0) probably_damaging(0.996) TCGA-DX-A48V-01 14 60062892 60062892 T A RTN1 3'UTR 0.40 TCGA-DX-A48V-01 14 60062923 60062923 T A RTN1 3'UTR 0.46 TCGA-DX-A48V-01 14 72139208 72139208 C T SIPA1L1 Silent p.G991G 0.05 TCGA-DX-A48V-01 16 28334287 28334287 C A SBK1 3'UTR 0.11 TCGA-DX-A48V-01 16 30615555 30615555 A G ZNF689 3'UTR 0.05 TCGA-DX-A48V-01 17 16330147 16330147 T C TRPV2 Missense_Mutation p.F403L 0.07 tolerated(0.38) benign(0) TCGA-DX-A48V-01 17 3788691 3788691 G T CAMKK1 Missense_Mutation p.S97R 0.82 tolerated(0.46) benign(0.109) TCGA-DX-A48V-01 17 7576852 7576852 C A TP53 Splice_Site p.X331_splice 0.93 TCGA-DX-A48V-01 17 80615536 80615536 C T RAB40B 3'UTR 0.48 TCGA-DX-A48V-01 18 63547710 63547710 C T CDH7 Silent p.I646I 0.10 TCGA-DX-A48V-01 18 8380421 8380421 C T PTPRM Missense_Mutation p.A1305V 0.40 deleterious(0.02) benign(0.142) TCGA-DX-A48V-01 18 8380423 8380423 C T PTPRM Nonsense_Mutation p.Q1306* 0.39 TCGA-DX-A48V-01 19 15122018 15122018 C A CCDC105 Missense_Mutation p.H127Q 0.41 tolerated(0.44) benign(0.009) TCGA-DX-A48V-01 19 36293961 36293961 G T PRODH2 Missense_Mutation p.L417M 0.83 tolerated(0.17) possibly_damaging(0.905) TCGA-DX-A48V-01 1 11596444 11596444 G A PTCHD2 Missense_Mutation p.V1294I 0.89 tolerated(0.15) benign(0.391) TCGA-DX-A48V-01 1 145116561 145116561 T C SEC22B RNA 0.11 TCGA-DX-A48V-01 1 155035074 155035074 G A ADAM15 3'UTR 0.53 TCGA-DX-A48V-01 1 201038658 201038658 A C CACNA1S Missense_Mutation p.L811R 0.11 deleterious(0) possibly_damaging(0.86) TCGA-DX-A48V-01 1 228521396 228521396 C T OBSCN Silent p.V6280V 0.42 TCGA-DX-A48V-01 1 43783334 43783334 G A TIE1 Missense_Mutation p.C907Y 0.14 deleterious(0) probably_damaging(0.964) TCGA-DX-A48V-01 1 77984281 77984281 G A AK5 Missense_Mutation p.E394K 0.37 tolerated(0.33) benign(0.016) TCGA-DX-A48V-01 1 77984373 77984373 G C AK5 Missense_Mutation p.L424F 0.34 tolerated(0.62) benign(0.016) TCGA-DX-A48V-01 20 33590334 33590477 20:33590334-33590477 - TRPC4AP large deletion 0.45 TCGA-DX-A48V-01 20 4880333 4880333 G A SLC23A2 Missense_Mutation p.T117M 0.09 tolerated(0.1) probably_damaging(0.993) TCGA-DX-A48V-01 20 58520249 58520249 C G FAM217B 3'UTR 0.60 TCGA-DX-A48V-01 20 61452555 61452555 C T COL9A3 Missense_Mutation p.P111L 0.04 tolerated(0.06) unknown(0) TCGA-DX-A48V-01 21 10951356 10951356 T G TPTE Missense_Mutation p.K119T 0.10 tolerated(0.53) benign(0.017) TCGA-DX-A48V-01 22 22985468 22985468 T C GGTLC2 5'Flank 0.37 TCGA-DX-A48V-01 22 42205936 42205936 C T CCDC134 Silent p.L53L 0.39 TCGA-DX-A48V-01 2 220327072 220327072 T G SPEG Missense_Mutation p.I890S 0.49 probably_damaging(0.93) TCGA-DX-A48V-01 2 239355776 239355776 G A ASB1 3'UTR 0.63 TCGA-DX-A48V-01 3 113505151 113505151 C G ATP6V1A Missense_Mutation p.Q213E 0.37 tolerated(0.88) benign(0.017) TCGA-DX-A48V-01 3 113505230 113505230 C T ATP6V1A Missense_Mutation p.P239L 0.41 deleterious(0) probably_damaging(1) TCGA-DX-A48V-01 3 173999104 173999104 G A NLGN1 3'UTR 0.15 TCGA-DX-A48V-01 3 48465046 48465046 G C PLXNB1 Silent p.P325P 0.43 TCGA-DX-A48V-01 3 50229150 50229164 GCTGGGACCATGGGG - GNAT1 Missense_Mutation 0.46 TCGA-DX-A48V-01 4 146049035 146049035 G A ABCE1 3'UTR 0.31 TCGA-DX-A48V-01 4 27010131 27010131 C T STIM2 Missense_Mutation p.H419Y 0.43 deleterious(0) probably_damaging(0.985) TCGA-DX-A48V-01 4 57301629 57301629 C A PPAT Missense_Mutation p.E5D 0.40 tolerated(0.39) benign(0.006) TCGA-DX-A48V-01 4 62362873 62362873 G C LPHN3 5'UTR 0.48 TCGA-DX-A48V-01 4 62362917 62362917 T C LPHN3 5'UTR 0.56 TCGA-DX-A48V-01 4 74361050 74361050 C G AFM Missense_Mutation p.D364E 0.50 tolerated(1) benign(0.01) TCGA-DX-A48V-01 4 77232051 77232051 C G FAM47E-STBD1 3'UTR 0.58 TCGA-DX-A48V-01 4 77232068 77232068 C A FAM47E-STBD1 3'UTR 0.50 TCGA-DX-A48V-01 5 140579996 140579996 G T PCDHB11 Missense_Mutation p.G217C 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DX-A48V-01 5 150274829 150274829 A G ZNF300 3'UTR 0.08 TCGA-DX-A48V-01 6 145174004 145174004 T C UTRN 3'UTR 0.42 TCGA-DX-A48V-01 6 53409419 53409419 G C GCLC Missense_Mutation p.P9A 0.39 tolerated(0.16) probably_damaging(0.991) TCGA-DX-A48V-01 6 63990354 63990354 G A LGSN Missense_Mutation p.R368C 0.10 tolerated(0.07) possibly_damaging(0.748) TCGA-DX-A48V-01 6 75848600 75848600 C T COL12A1 Missense_Mutation p.A1679T 0.13 probably_damaging(0.999) TCGA-DX-A48V-01 7 138602177 138602177 G A KIAA1549 Missense_Mutation p.A732V 0.39 deleterious(0.04) benign(0.043) TCGA-DX-A48V-01 8 142222376 142222376 C A SLC45A4 Missense_Mutation p.G690C 0.27 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-DX-A48V-01 8 145110770 145110770 G A OPLAH Silent p.A723A 0.44 TCGA-DX-A48V-01 9 119976716 119976716 G A ASTN2 Silent p.D312D 0.43 TCGA-DX-A48V-01 9 37512469 37512469 T A FBXO10 3'UTR 0.09 TCGA-DX-A48V-01 X 30236779 30236779 C T MAGEB2 Missense_Mutation p.P28S 0.91 deleterious(0.02) benign(0.053) TCGA-DX-A48V-01 Y 9304680 9304680 G A TSPY1 Missense_Mutation p.R24Q 0.11 tolerated(0.55) benign(0.05) TCGA-DX-A6B7-01 10 69866481 69866481 C T MYPN 5'Flank 0.94 TCGA-DX-A6B7-01 11 108159801 108159802 AG T ATM Frame_Shift_Del p.I1404Ffs*2 0.18 TCGA-DX-A6B7-01 11 63276351 63276351 G C LGALS12 Missense_Mutation p.C110S 0.41 deleterious(0) probably_damaging(0.991) TCGA-DX-A6B7-01 11 65402801 65402801 G A PCNXL3 Missense_Mutation p.S1689N 0.41 tolerated(0.25) benign(0.05) TCGA-DX-A6B7-01 12 80199954 80199954 T C PPP1R12A Silent p.T605T 0.27 TCGA-DX-A6B7-01 13 103436678 103436678 T A KDELC1 3'UTR 0.42 TCGA-DX-A6B7-01 14 24028936 24028936 T A AP1G2 3'UTR 0.18 TCGA-DX-A6B7-01 14 31091601 31091601 G A SCFD1 Silent p.Q19Q 0.43 TCGA-DX-A6B7-01 14 88652154 88652154 C T KCNK10 Missense_Mutation p.G453R 0.43 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-DX-A6B7-01 15 31339353 31339353 G A TRPM1 Silent p.N592N 0.41 TCGA-DX-A6B7-01 17 39280131 39280131 C T KRTAP4-12 Missense_Mutation p.V82M 0.05 deleterious(0.04) unknown(0) TCGA-DX-A6B7-01 17 65068527 65068527 T C HELZ 3'UTR 0.48 TCGA-DX-A6B7-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.86 deleterious(0) probably_damaging(0.994) TCGA-DX-A6B7-01 17 79426613 79426613 C T RP11-1055B8.7 Missense_Mutation p.P1963L 0.54 probably_damaging(0.999) TCGA-DX-A6B7-01 19 17740964 17740964 C T UNC13A Missense_Mutation p.R1220H 0.26 deleterious(0) probably_damaging(0.994) TCGA-DX-A6B7-01 19 17937390 17937390 T C JAK3 3'UTR 0.50 TCGA-DX-A6B7-01 19 19360886 19360886 T G NCAN 3'UTR 0.55 TCGA-DX-A6B7-01 19 40363977 40363977 T G FCGBP Missense_Mutation p.K4889Q 0.45 benign(0.086) TCGA-DX-A6B7-01 1 114512653 114512653 G C HIPK1 Missense_Mutation p.L949F 0.38 tolerated(0.07) benign(0.066) TCGA-DX-A6B7-01 1 114515911 114515911 G A HIPK1 Missense_Mutation p.G1137D 0.43 tolerated(0.1) probably_damaging(0.964) TCGA-DX-A6B7-01 1 114515984 114515984 G C HIPK1 Silent p.G1161G 0.47 TCGA-DX-A6B7-01 1 114516149 114516149 G T HIPK1 3'UTR 0.41 TCGA-DX-A6B7-01 1 114517122 114517122 G C HIPK1 3'UTR 0.47 TCGA-DX-A6B7-01 1 114517988 114517988 G C HIPK1 3'UTR 0.46 TCGA-DX-A6B7-01 1 114518071 114518071 G C HIPK1 3'UTR 0.32 TCGA-DX-A6B7-01 1 114518101 114518101 G C HIPK1 3'UTR 0.28 TCGA-DX-A6B7-01 1 114518345 114518345 G A HIPK1 3'UTR 0.54 TCGA-DX-A6B7-01 1 114518348 114518348 G A HIPK1 3'UTR 0.51 TCGA-DX-A6B7-01 1 114518473 114518473 G A HIPK1 3'UTR 0.50 TCGA-DX-A6B7-01 1 114518534 114518534 G A HIPK1 3'UTR 0.26 TCGA-DX-A6B7-01 1 114518584 114518584 G C HIPK1 3'UTR 0.30 TCGA-DX-A6B7-01 1 114518613 114518613 G C HIPK1 3'UTR 0.35 TCGA-DX-A6B7-01 1 35228316 35228316 G A GJB4 3'UTR 0.38 TCGA-DX-A6B7-01 1 91180171 91180171 G A BARHL2 Silent p.Y256Y 0.23 TCGA-DX-A6B7-01 20 3914536 3914536 G T RNF24 3'UTR 0.56 TCGA-DX-A6B7-01 22 38155238 38155238 G A TRIOBP Silent p.E2097E 0.61 TCGA-DX-A6B7-01 2 149799199 149799199 C T KIF5C Missense_Mutation p.R172W 0.09 deleterious(0) probably_damaging(0.993) TCGA-DX-A6B7-01 2 166187935 166187935 A G SCN2A Missense_Mutation p.K749E 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A6B7-01 2 208632893 208632893 T A FZD5 Nonsense_Mutation p.K191* 0.41 TCGA-DX-A6B7-01 2 46809885 46809885 A C RHOQ 3'UTR 0.55 TCGA-DX-A6B7-01 3 50005514 50005514 A C RBM6 Missense_Mutation p.D219A 0.26 tolerated(0.07) possibly_damaging(0.682) TCGA-DX-A6B7-01 4 55164148 55164148 G A PDGFRA 3'UTR 0.43 TCGA-DX-A6B7-01 5 143854340 143854340 C A KCTD16 3'UTR 0.73 TCGA-DX-A6B7-01 5 170345830 170345830 A G RANBP17 Silent p.R356R 0.42 TCGA-DX-A6B7-01 5 33937261 33937261 C T RXFP3 Missense_Mutation p.A139V 0.45 deleterious(0) probably_damaging(0.981) TCGA-DX-A6B7-01 5 45260100 45260100 G A HCN1 3'UTR 0.10 TCGA-DX-A6B7-01 6 24687908 24687908 A - ACOT13 Intron 0.44 TCGA-DX-A6B7-01 6 52705543 52705543 C G GSTA5 Silent p.L23L 0.36 TCGA-DX-A6B7-01 6 82459945 82459945 C G FAM46A Missense_Mutation p.G266R 0.45 deleterious(0.02) probably_damaging(1) TCGA-DX-A6B7-01 7 143042676 143042676 C T CLCN1 Silent p.L665L 0.41 TCGA-DX-A6B7-01 7 89791383 89791383 C G STEAP1 Missense_Mutation p.H251Q 0.27 tolerated(0.22) benign(0.027) TCGA-DX-A6B7-01 8 65495074 65495074 A C BHLHE22 3'UTR 0.06 TCGA-DX-A6B7-01 8 68172143 68172144 - TT ARFGEF1 Frame_Shift_Ins p.G716Efs*29 0.31 TCGA-DX-A6B7-01 9 86530369 86530369 A C KIF27 Silent p.T46T 0.16 TCGA-DX-A6B7-01 X 12736131 12736131 T G FRMPD4 Missense_Mutation p.S1062R 0.57 tolerated_low_confidence(0.29) benign(0.016) TCGA-DX-A6B8-01 10 105215261 105215261 G A CALHM1 Silent p.L267L 0.97 TCGA-DX-A6B8-01 11 119183296 119183296 C T MCAM Missense_Mutation p.V268M 0.48 deleterious(0) probably_damaging(0.942) TCGA-DX-A6B8-01 11 48267306 48267306 G C OR4X2 Silent p.L217L 0.42 TCGA-DX-A6B8-01 11 6007790 6007790 G T OR52L1 Missense_Mutation p.A124E 0.82 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A6B8-01 11 65374848 65374848 A T MAP3K11 Missense_Mutation p.L461Q 0.64 deleterious(0.01) possibly_damaging(0.601) TCGA-DX-A6B8-01 14 100728670 100728670 G C YY1 Missense_Mutation p.V237L 0.30 tolerated(0.27) benign(0.031) TCGA-DX-A6B8-01 14 102493601 102493601 C T DYNC1H1 Silent p.N2954N 0.85 TCGA-DX-A6B8-01 14 105843157 105843157 A G PACS2 Missense_Mutation p.D285G 0.33 deleterious(0.02) possibly_damaging(0.82) TCGA-DX-A6B8-01 14 106878021 106878021 G A IGHV4-39 Missense_Mutation p.A19V 0.34 tolerated(0.05) benign(0.032) TCGA-DX-A6B8-01 14 62550996 62550996 C T SYT16 Missense_Mutation p.A506V 0.82 tolerated(1) benign(0.001) TCGA-DX-A6B8-01 15 102515215 102515215 G A WASH3P 3'Flank 0.13 TCGA-DX-A6B8-01 15 28421691 28421691 C G HERC2 Missense_Mutation p.S3190T 0.88 probably_damaging(0.997) TCGA-DX-A6B8-01 15 33025621 33025621 C T GREM1 3'UTR 0.93 TCGA-DX-A6B8-01 15 79587136 79587136 A G ANKRD34C Missense_Mutation p.R504G 0.78 deleterious(0.01) possibly_damaging(0.705) TCGA-DX-A6B8-01 16 67876994 67876994 T C THAP11 Silent p.T179T 0.93 TCGA-DX-A6B8-01 16 70869589 70869589 T C HYDIN Missense_Mutation p.Q4464R 0.73 possibly_damaging(0.607) TCGA-DX-A6B8-01 17 1968420 1968420 C T SMG6 Missense_Mutation p.C1359Y 0.08 deleterious(0) probably_damaging(1) TCGA-DX-A6B8-01 17 2310279 2310279 G A AC006435.1 3'UTR 0.36 TCGA-DX-A6B8-01 17 47131476 47131476 G T IGF2BP1 3'UTR 0.89 TCGA-DX-A6B8-01 17 54969002 54969002 T C TRIM25 3'UTR 0.88 TCGA-DX-A6B8-01 17 68172779 68172779 G T KCNJ2 3'UTR 1.00 TCGA-DX-A6B8-01 17 74077182 74077182 G A EXOC7 3'Flank 0.82 TCGA-DX-A6B8-01 17 7475218 7475218 T A SENP3 Intron 0.50 TCGA-DX-A6B8-01 17 7579470 7579471 - G TP53 Frame_Shift_Ins p.V73Rfs*76 0.44 TCGA-DX-A6B8-01 18 47800222 47800222 C A MBD1 Silent p.L386L 0.45 TCGA-DX-A6B8-01 19 15052698 15052698 C T OR7C2 Missense_Mutation p.T133M 0.10 tolerated_low_confidence(0.49) benign(0.004) TCGA-DX-A6B8-01 19 17443927 17443927 G A ANO8 Missense_Mutation p.R158C 0.76 tolerated(0.22) benign(0.08) TCGA-DX-A6B8-01 19 48945211 48945211 A G GRIN2D Missense_Mutation p.D813G 0.29 deleterious(0) probably_damaging(0.914) TCGA-DX-A6B8-01 19 56539567 56539567 C T NLRP5 Silent p.P656P 0.35 TCGA-DX-A6B8-01 19 841040 841040 C T PRTN3 Missense_Mutation p.A11V 0.36 deleterious(0.03) unknown(0) TCGA-DX-A6B8-01 1 153410753 153410753 C T S100A7L2 Missense_Mutation p.R29H 0.55 tolerated(1) benign(0) TCGA-DX-A6B8-01 1 154956441 154956442 - T FLAD1 Frame_Shift_Ins p.R91Mfs*11 0.29 TCGA-DX-A6B8-01 1 19181394 19181394 G A TAS1R2 Silent p.H190H 0.23 TCGA-DX-A6B8-01 1 209796433 209796433 C T LAMB3 Missense_Mutation p.R817H 0.43 tolerated(0.39) benign(0) TCGA-DX-A6B8-01 1 233482270 233482270 G A MLK4 Nonsense_Mutation p.W296* 0.94 TCGA-DX-A6B8-01 1 45811025 45811025 A C TESK2 Silent p.P401P 0.46 TCGA-DX-A6B8-01 1 62253620 62253620 T G INADL Silent p.T348T 0.45 TCGA-DX-A6B8-01 1 71472738 71472738 C T PTGER3 Intron 0.42 TCGA-DX-A6B8-01 20 2842314 2842314 G A VPS16 Missense_Mutation p.R288Q 0.76 tolerated(0.39) benign(0.008) TCGA-DX-A6B8-01 20 33730242 33730242 C T EDEM2 Missense_Mutation p.V100M 0.54 tolerated(0.12) benign(0.026) TCGA-DX-A6B8-01 21 38884922 38884922 A - DYRK1A 3'Flank 0.25 TCGA-DX-A6B8-01 22 17983960 17983960 G A CECR2 Missense_Mutation p.R220H 0.69 deleterious(0) possibly_damaging(0.907) TCGA-DX-A6B8-01 22 29611585 29611585 C T EMID1 Silent p.C95C 0.14 TCGA-DX-A6B8-01 2 166908339 166908339 G A SCN1A Missense_Mutation p.A285V 0.42 tolerated(0.26) benign(0.061) TCGA-DX-A6B8-01 2 170163909 170163909 T C LRP2 Splice_Site p.X104_splice 0.92 TCGA-DX-A6B8-01 2 23977530 23977530 C T ATAD2B Missense_Mutation p.R1398H 0.83 tolerated(1) benign(0) TCGA-DX-A6B8-01 2 241988519 241988519 T C SNED1 Missense_Mutation p.C529R 0.78 deleterious(0) probably_damaging(0.999) TCGA-DX-A6B8-01 2 56404786 56404786 T G RP11-481J13.1 Intron 0.22 TCGA-DX-A6B8-01 3 58629402 58629402 G A FAM3D Silent p.I103I 0.26 TCGA-DX-A6B8-01 4 124324321 124324322 TC - SPRY1 3'UTR 0.27 TCGA-DX-A6B8-01 4 147561228 147561228 G A POU4F2 Silent p.A166A 0.49 TCGA-DX-A6B8-01 4 47537547 47537547 C A ATP10D Silent p.R266R 0.78 TCGA-DX-A6B8-01 4 90856549 90856549 A C MMRN1 Missense_Mutation p.K573T 0.55 deleterious(0) probably_damaging(0.999) TCGA-DX-A6B8-01 5 102503855 102503855 G T PPIP5K2 Missense_Mutation p.K714N 0.42 deleterious(0) possibly_damaging(0.804) TCGA-DX-A6B8-01 5 11117589 11117589 C T CTNND2 Silent p.A750A 0.57 TCGA-DX-A6B8-01 5 122952127 122952127 G C CSNK1G3 3'UTR 0.57 TCGA-DX-A6B8-01 5 140431715 140431715 G A PCDHB1 Silent p.P220P 0.50 TCGA-DX-A6B8-01 5 145483893 145483893 G C PLAC8L1 5'UTR 0.55 TCGA-DX-A6B8-01 5 78338141 78338141 C T DMGDH Silent p.Q386Q 0.69 TCGA-DX-A6B8-01 6 114182157 114182157 T A MARCKS 3'UTR 0.22 TCGA-DX-A6B8-01 6 133850780 133850780 A G EYA4 3'UTR 0.50 TCGA-DX-A6B8-01 6 153294183 153294183 T C FBXO5 Missense_Mutation p.T303A 0.50 tolerated(0.79) benign(0.003) TCGA-DX-A6B8-01 6 160526147 160526147 C T IGF2R 3'UTR 0.40 TCGA-DX-A6B8-01 6 163989797 163989797 C A QKI Intron 0.14 TCGA-DX-A6B8-01 6 38913240 38913240 C A DNAH8 Intron 0.52 TCGA-DX-A6B8-01 6 47649471 47649471 A G GPR111 Silent p.T392T 0.36 TCGA-DX-A6B8-01 6 49494259 49494259 C T GLYATL3 Missense_Mutation p.R167W 0.45 deleterious(0) possibly_damaging(0.851) TCGA-DX-A6B8-01 7 127347658 127347658 C A SND1 Missense_Mutation p.P332H 0.38 deleterious(0) possibly_damaging(0.731) TCGA-DX-A6B8-01 7 142459862 142459862 C A PRSS1 Missense_Mutation p.N146K 0.22 deleterious(0.02) possibly_damaging(0.845) TCGA-DX-A6B8-01 7 143053674 143053674 A G FAM131B Missense_Mutation p.F351S 0.48 deleterious(0) probably_damaging(0.999) TCGA-DX-A6B8-01 8 144642051 144642051 G T GSDMD Missense_Mutation p.A108S 0.41 deleterious(0.01) possibly_damaging(0.751) TCGA-DX-A6B8-01 8 144642052 144642052 C A GSDMD Missense_Mutation p.A108D 0.41 deleterious(0) probably_damaging(0.969) TCGA-DX-A6B8-01 9 32635336 32635336 G A TAF1L Missense_Mutation p.T81M 0.12 tolerated(0.09) probably_damaging(0.996) TCGA-DX-A6B8-01 9 379812 379812 G A DOCK8 Missense_Mutation p.A828T 0.49 deleterious(0.03) benign(0.094) TCGA-DX-A6B8-01 9 43626916 43626916 G C SPATA31A6 Missense_Mutation p.L591V 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-DX-A6B8-01 X 76937411 76937411 C A ATRX Nonsense_Mutation p.E1113* 1.00 TCGA-DX-A6B8-01 Y 14902412 14902412 G A USP9Y Missense_Mutation p.E1212K 0.14 deleterious(0.01) probably_damaging(0.924) TCGA-DX-A6B8-01 Y 4925426 4925426 T A PCDH11Y Missense_Mutation p.S188T 0.91 tolerated(0.8) benign(0.365) TCGA-DX-A6B9-01 12 108013765 108013765 G A BTBD11 Missense_Mutation p.V819I 0.38 deleterious(0.05) possibly_damaging(0.79) TCGA-DX-A6B9-01 12 46321265 46321265 T C SCAF11 Missense_Mutation p.D740G 0.50 tolerated(0.08) possibly_damaging(0.521) TCGA-DX-A6B9-01 13 110831646 110831646 G A COL4A1 Silent p.I772I 0.14 TCGA-DX-A6B9-01 13 110831720 110831720 G A COL4A1 Missense_Mutation p.P748S 0.25 probably_damaging(0.968) TCGA-DX-A6B9-01 18 23731924 23731924 G A PSMA8 Missense_Mutation p.R117H 0.47 deleterious(0.02) probably_damaging(0.929) TCGA-DX-A6B9-01 19 36673226 36673226 G C ZNF565 3'UTR 0.24 TCGA-DX-A6B9-01 19 38996533 38996533 G A RYR1 Missense_Mutation p.E2830K 0.30 benign(0.01) TCGA-DX-A6B9-01 19 38996544 38996544 G C RYR1 Missense_Mutation p.K2833N 0.34 benign(0.027) TCGA-DX-A6B9-01 1 111060811 111060811 C T KCNA10 Missense_Mutation p.R200H 0.10 deleterious(0.01) benign(0.293) TCGA-DX-A6B9-01 1 240775221 240775221 T C GREM2 5'UTR 0.05 TCGA-DX-A6B9-01 1 48695065 48695065 G A SLC5A9 Silent p.G171G 0.17 TCGA-DX-A6B9-01 2 236877199 236877199 G A AGAP1 Missense_Mutation p.R526K 0.26 tolerated(0.48) benign(0.124) TCGA-DX-A6B9-01 2 236877203 236877203 G A AGAP1 Silent p.K527K 0.26 TCGA-DX-A6B9-01 2 236877223 236877223 G C AGAP1 Missense_Mutation p.S534T 0.28 tolerated(0.05) probably_damaging(0.94) TCGA-DX-A6B9-01 5 140482187 140482187 C T PCDHB3 Missense_Mutation p.R652C 0.37 deleterious_low_confidence(0.01) benign(0.153) TCGA-DX-A6B9-01 5 141334716 141334716 G A PCDH12 Nonsense_Mutation p.Q901* 0.39 TCGA-DX-A6B9-01 5 39153561 39153561 C T FYB Silent p.P437P 0.38 TCGA-DX-A6B9-01 6 36462406 36462406 G - STK38 3'UTR 0.28 TCGA-DX-A6B9-01 8 11615950 11615950 T C GATA4 Missense_Mutation p.L432S 0.44 deleterious(0) probably_damaging(0.969) TCGA-DX-A6B9-01 9 140002840 140002840 G T MAN1B1 Missense_Mutation p.V633F 0.41 deleterious(0) probably_damaging(0.998) TCGA-DX-A6B9-01 X 152482246 152482246 C T MAGEA1 Silent p.P255P 0.38 TCGA-DX-A6BA-01 10 37488707 37488707 G C ANKRD30A Missense_Mutation p.W867C 0.84 tolerated(0.19) possibly_damaging(0.893) TCGA-DX-A6BA-01 10 55955488 55955488 C G PCDH15 Missense_Mutation p.L420F 0.83 deleterious(0.04) probably_damaging(0.997) TCGA-DX-A6BA-01 11 116820914 116820914 C G SIK3 Intron 0.15 TCGA-DX-A6BA-01 11 59211431 59211431 C T OR5A1 Nonsense_Mutation p.R264* 0.04 TCGA-DX-A6BA-01 12 101436131 101436131 A T ANO4 Missense_Mutation p.I312F 0.29 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BA-01 12 75676046 75676046 A T CAPS2 Missense_Mutation p.S552T 0.63 deleterious(0) benign(0.119) TCGA-DX-A6BA-01 12 8756728 8756728 C G AICDA 3'UTR 0.18 TCGA-DX-A6BA-01 12 9754110 9754110 C G KLRB1 Silent p.G57G 0.53 TCGA-DX-A6BA-01 14 57672756 57672756 T C EXOC5 3'UTR 0.49 TCGA-DX-A6BA-01 14 65253407 65253407 G A SPTB Silent p.S1092S 0.47 TCGA-DX-A6BA-01 15 41366726 41366726 G A INO80 Missense_Mutation p.T390I 0.05 deleterious(0) probably_damaging(0.97) TCGA-DX-A6BA-01 15 84652065 84652065 A C ADAMTSL3 Missense_Mutation p.K1229Q 0.55 deleterious(0) probably_damaging(1) TCGA-DX-A6BA-01 16 3016141 3016141 T C KREMEN2 Silent p.R90R 0.22 TCGA-DX-A6BA-01 16 67978141 67978141 G A SLC12A4 3'UTR 0.89 TCGA-DX-A6BA-01 16 84270722 84270722 C T KCNG4 Missense_Mutation p.V124M 0.87 tolerated(0.19) probably_damaging(0.913) TCGA-DX-A6BA-01 17 16004983 16004983 C T NCOR1 Silent p.T757T 0.28 TCGA-DX-A6BA-01 17 28887198 28887198 G - TBC1D29 Frame_Shift_Del 0.10 TCGA-DX-A6BA-01 17 38027052 38027052 C G ZPBP2 Missense_Mutation p.P75R 0.04 deleterious(0) probably_damaging(1) TCGA-DX-A6BA-01 17 47121387 47121387 T C IGF2BP1 Missense_Mutation p.I420T 0.27 deleterious(0) probably_damaging(0.938) TCGA-DX-A6BA-01 17 67266815 67266815 T A ABCA5 Missense_Mutation p.Y990F 0.22 tolerated(0.25) benign(0.315) TCGA-DX-A6BA-01 17 7578290 7578290 C T TP53 Splice_Site p.X187_splice 0.76 TCGA-DX-A6BA-01 17 79005063 79005063 C - BAIAP2 5'Flank 0.27 TCGA-DX-A6BA-01 18 76755241 76755241 G A SALL3 Missense_Mutation p.V1084I 0.88 tolerated(0.69) benign(0.024) TCGA-DX-A6BA-01 19 16003201 16003201 C T CYP4F2 Missense_Mutation p.R148H 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-DX-A6BA-01 19 19627062 19627062 G C NDUFA13 Missense_Mutation p.K5N 0.40 deleterious(0) probably_damaging(0.988) TCGA-DX-A6BA-01 19 38379228 38379228 C T WDR87 Missense_Mutation p.E1656K 0.44 probably_damaging(0.994) TCGA-DX-A6BA-01 19 39361491 39361491 T C RINL Missense_Mutation p.D248G 0.44 tolerated(0.07) benign(0.03) TCGA-DX-A6BA-01 19 47569460 47569460 T A ZC3H4 3'UTR 0.23 TCGA-DX-A6BA-01 19 6682024 6682024 G C C3 Missense_Mutation p.D1426E 0.15 tolerated(0.16) benign(0.026) TCGA-DX-A6BA-01 1 109394841 109394842 - TAA AKNAD1 In_Frame_Ins p.I148dup 0.14 TCGA-DX-A6BA-01 1 171178052 171178052 T A FMO2 Missense_Mutation p.L459Q 0.52 deleterious(0) probably_damaging(1) TCGA-DX-A6BA-01 1 209791807 209791807 C T LAMB3 Missense_Mutation p.E967K 0.30 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BA-01 1 21183897 21183906 TTAGTGATTT - EIF4G3 Frame_Shift_Del p.K1060Sfs*16 0.38 TCGA-DX-A6BA-01 1 2238213 2238213 C A SKI 3'UTR 0.89 TCGA-DX-A6BA-01 1 230898442 230898442 G A CAPN9 Missense_Mutation p.R149H 0.55 deleterious(0) probably_damaging(1) TCGA-DX-A6BA-01 1 53323022 53323022 G T ZYG11A Missense_Mutation p.Q203H 0.20 tolerated(0.06) benign(0.012) TCGA-DX-A6BA-01 20 40033612 40033612 G C CHD6 Missense_Mutation p.P2590R 0.20 deleterious(0.02) possibly_damaging(0.77) TCGA-DX-A6BA-01 21 47421263 47421263 A G COL6A1 Missense_Mutation p.K640R 0.47 tolerated(0.22) benign(0.306) TCGA-DX-A6BA-01 22 29693838 29693838 A T EWSR1 Missense_Mutation p.K444I 0.09 tolerated(0.18) unknown(0) TCGA-DX-A6BA-01 22 39085422 39085422 G A JOSD1 Missense_Mutation p.P65S 0.78 deleterious(0.02) possibly_damaging(0.517) TCGA-DX-A6BA-01 2 198621169 198621169 C T BOLL Missense_Mutation p.E250K 0.46 deleterious(0) probably_damaging(0.909) TCGA-DX-A6BA-01 2 228148947 228148947 G A COL4A3 Missense_Mutation p.V923I 0.14 unknown(0) TCGA-DX-A6BA-01 2 46378274 46378300 CCGACAATGAGGACGACCTATTTGAGT - PRKCE In_Frame_Del p.D610_S618del 0.84 TCGA-DX-A6BA-01 2 62451489 62451489 A G B3GNT2 3'UTR 0.81 TCGA-DX-A6BA-01 2 9545025 9545025 A T ITGB1BP1 3'UTR 0.05 TCGA-DX-A6BA-01 3 124732434 124732434 A G HEG1 Silent p.S663S 0.06 TCGA-DX-A6BA-01 3 14861642 14861642 C - FGD5 Frame_Shift_Del p.S356Lfs*17 0.32 TCGA-DX-A6BA-01 3 43097790 43097790 T G FAM198A Missense_Mutation p.V547G 0.45 deleterious(0.03) benign(0.063) TCGA-DX-A6BA-01 3 44402983 44402983 G T TCAIM Missense_Mutation p.D98Y 0.57 tolerated(0.14) benign(0.047) TCGA-DX-A6BA-01 3 64502381 64502381 A G ADAMTS9 3'UTR 0.07 TCGA-DX-A6BA-01 4 47563058 47563058 T A ATP10D Silent p.S878S 0.38 TCGA-DX-A6BA-01 5 140626730 140626730 G A PCDHB15 Silent p.E528E 0.47 TCGA-DX-A6BA-01 5 38946614 38946614 G A RICTOR Missense_Mutation p.P1452L 0.05 tolerated(0.06) possibly_damaging(0.818) TCGA-DX-A6BA-01 6 159650887 159650887 A T FNDC1 Silent p.G407G 0.38 TCGA-DX-A6BA-01 6 1611233 1611233 G A FOXC1 Missense_Mutation p.E185K 0.59 deleterious(0) benign(0.099) TCGA-DX-A6BA-01 6 168070051 168070051 G C RP11-351J23.2 RNA 0.25 TCGA-DX-A6BA-01 6 33372739 33372739 T C KIFC1 Silent p.R289R 0.22 TCGA-DX-A6BA-01 7 127669285 127669285 G A LRRC4 Missense_Mutation p.T470M 0.55 tolerated(0.15) benign(0.003) TCGA-DX-A6BA-01 7 141618923 141618923 G T OR9A4 Missense_Mutation p.G83V 0.39 tolerated(0.05) possibly_damaging(0.862) TCGA-DX-A6BA-01 7 82785704 82785704 G T PCLO Missense_Mutation p.Q85K 0.75 unknown(0) TCGA-DX-A6BA-01 8 24384435 24384435 T A ADAM7 3'UTR 0.42 TCGA-DX-A6BA-01 8 63938818 63938818 G A GGH Missense_Mutation p.T133I 0.42 deleterious(0.01) probably_damaging(0.949) TCGA-DX-A6BA-01 8 97155630 97155630 C G GDF6 3'UTR 0.42 TCGA-DX-A6BA-01 9 135771063 135771063 C A TSC1 3'UTR 0.08 TCGA-DX-A6BA-01 9 139910007 139910007 C T ABCA2 Missense_Mutation p.D1186N 0.55 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BA-01 9 27158026 27158026 A - TEK Frame_Shift_Del p.V86Lfs*31 0.20 TCGA-DX-A6BA-01 9 27294315 27294315 G A EQTN Silent p.N96N 0.24 TCGA-DX-A6BA-01 9 88924912 88924912 A G ZCCHC6 Silent p.L1133L 0.47 TCGA-DX-A6BA-01 9 96440900 96440900 C T PHF2 3'UTR 0.54 TCGA-DX-A6BA-01 X 118215228 118215228 T A KIAA1210 3'UTR 0.50 TCGA-DX-A6BA-01 X 118284427 118284427 C A KIAA1210 Missense_Mutation p.S39I 0.49 deleterious_low_confidence(0.03) benign(0.022) TCGA-DX-A6BA-01 X 152159721 152159721 T G PNMA5 Missense_Mutation p.Q141P 0.33 tolerated(0.12) benign(0.007) TCGA-DX-A6BA-01 X 54784926 54784926 A G ITIH6 Silent p.D527D 0.45 TCGA-DX-A6BB-01 10 31812861 31812861 G A ZEB1 Missense_Mutation p.D869N 0.18 tolerated(0.17) possibly_damaging(0.479) TCGA-DX-A6BB-01 11 18195098 18195098 G A MRGPRX4 Missense_Mutation p.V99I 0.30 tolerated(0.45) benign(0.001) TCGA-DX-A6BB-01 12 23998927 23998927 G A SOX5 Silent p.N157N 0.13 TCGA-DX-A6BB-01 12 3982520 3982520 G A PARP11 5'UTR 0.36 TCGA-DX-A6BB-01 13 108861342 108861342 C A LIG4 Missense_Mutation p.D759Y 0.06 deleterious(0) probably_damaging(1) TCGA-DX-A6BB-01 13 77799597 77799597 G A MYCBP2 Nonsense_Mutation p.Q906* 0.30 TCGA-DX-A6BB-01 14 75052758 75052758 C A LTBP2 Missense_Mutation p.R210L 0.08 deleterious(0) probably_damaging(0.998) TCGA-DX-A6BB-01 14 90756883 90756883 C T NRDE2 Silent p.V637V 0.19 TCGA-DX-A6BB-01 15 30665316 30665316 G A CHRFAM7A Missense_Mutation p.R65C 0.14 deleterious(0) probably_damaging(1) TCGA-DX-A6BB-01 15 48797234 48797234 G A FBN1 Missense_Mutation p.R650C 0.12 possibly_damaging(0.891) TCGA-DX-A6BB-01 15 77907078 77907078 G A LINGO1 Missense_Mutation p.R391W 0.15 deleterious(0) benign(0.001) TCGA-DX-A6BB-01 15 89859684 89859684 A G FANCI Silent p.K1327K 0.07 TCGA-DX-A6BB-01 16 1497076 1497076 G C CLCN7 Silent p.L754L 0.16 TCGA-DX-A6BB-01 16 18840640 18840640 G A SMG1 Nonsense_Mutation p.Q3191* 0.31 TCGA-DX-A6BB-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.86 tolerated(0.11) benign(0.308) TCGA-DX-A6BB-01 19 48876925 48876925 C T SYNGR4 Missense_Mutation p.A82V 0.38 tolerated(0.3) benign(0.005) TCGA-DX-A6BB-01 1 100152730 100152730 G A PALMD Missense_Mutation p.E167K 0.08 deleterious(0) possibly_damaging(0.744) TCGA-DX-A6BB-01 1 112308929 112308929 A G DDX20 Missense_Mutation p.N628S 0.16 tolerated_low_confidence(0.12) benign(0.138) TCGA-DX-A6BB-01 1 151611519 151611519 A G SNX27 Missense_Mutation p.D156G 0.22 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BB-01 1 201166387 201166387 C T IGFN1 Silent p.C103C 0.09 TCGA-DX-A6BB-01 1 20517768 20517768 C T UBXN10 Silent p.H238H 0.40 TCGA-DX-A6BB-01 1 244219655 244219655 T C ZBTB18 3'UTR 0.42 TCGA-DX-A6BB-01 1 25229150 25229150 C T RUNX3 Silent p.S251S 0.37 TCGA-DX-A6BB-01 1 35223806 35223806 A G GJB5 3'UTR 0.27 TCGA-DX-A6BB-01 1 62737171 62737171 T G KANK4 Missense_Mutation p.Q664P 0.31 deleterious(0) possibly_damaging(0.507) TCGA-DX-A6BB-01 1 71870368 71870368 T A NEGR1 3'UTR 0.06 TCGA-DX-A6BB-01 1 75669436 75669436 T C SLC44A5 3'Flank 0.65 TCGA-DX-A6BB-01 20 31622058 31622058 C T BPIFB6 Silent p.F88F 0.15 TCGA-DX-A6BB-01 20 44641114 44641114 G T MMP9 Missense_Mutation p.G408V 0.16 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BB-01 2 120388386 120388386 C T PCDP1 Missense_Mutation p.T628I 0.46 tolerated(0.11) benign(0.041) TCGA-DX-A6BB-01 2 160750457 160750457 T C LY75-CD302 Missense_Mutation p.Y202C 0.39 tolerated(0.11) probably_damaging(0.993) TCGA-DX-A6BB-01 2 171070993 171070993 G A MYO3B Silent p.L142L 0.37 TCGA-DX-A6BB-01 2 172950516 172950516 C T DLX1 Silent p.H37H 0.21 TCGA-DX-A6BB-01 2 196581640 196581640 C T SLC39A10 Missense_Mutation p.S659F 0.13 deleterious(0.01) probably_damaging(0.914) TCGA-DX-A6BB-01 2 73676274 73676274 A T ALMS1 Missense_Mutation p.T873S 0.24 benign(0.174) TCGA-DX-A6BB-01 3 108248169 108248169 G A MYH15 5'UTR 0.55 TCGA-DX-A6BB-01 3 109028041 109028041 T G DPPA2 Missense_Mutation p.Q106H 0.24 tolerated(0.09) benign(0.001) TCGA-DX-A6BB-01 3 49842732 49842732 G A UBA7 3'UTR 0.08 TCGA-DX-A6BB-01 4 107845150 107845150 G A DKK2 Silent p.Y247Y 0.44 TCGA-DX-A6BB-01 4 92520141 92520141 A T CCSER1 Missense_Mutation p.K879M 0.17 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-DX-A6BB-01 5 139508080 139508080 A T IGIP Missense_Mutation p.M7L 0.07 deleterious_low_confidence(0) benign(0) TCGA-DX-A6BB-01 5 140603199 140603199 T A PCDHB14 Missense_Mutation p.I41N 0.43 tolerated_low_confidence(0.12) possibly_damaging(0.694) TCGA-DX-A6BB-01 5 179268934 179268934 C T C5orf45 Missense_Mutation p.R141H 0.59 tolerated(0.14) benign(0.004) TCGA-DX-A6BB-01 5 86514125 86514125 A T AC008394.1 Missense_Mutation p.N32K 0.13 unknown(0) TCGA-DX-A6BB-01 5 86707051 86707051 C T CCNH Missense_Mutation p.R77K 0.39 tolerated(1) benign(0.001) TCGA-DX-A6BB-01 5 98192004 98192004 A C CHD1 3'UTR 0.36 TCGA-DX-A6BB-01 6 24850875 24850875 C A FAM65B Nonsense_Mutation p.G250* 0.09 TCGA-DX-A6BB-01 6 28500188 28500188 T C GPX5 Silent p.S150S 0.26 TCGA-DX-A6BB-01 6 4037782 4037782 A G PRPF4B Missense_Mutation p.R464G 1.00 tolerated(0.08) benign(0.152) TCGA-DX-A6BB-01 6 46657281 46657281 G C TDRD6 Missense_Mutation p.E472D 0.25 tolerated(0.77) benign(0.005) TCGA-DX-A6BB-01 6 51892681 51892681 T A PKHD1 Missense_Mutation p.I1192F 0.50 deleterious(0) probably_damaging(0.931) TCGA-DX-A6BB-01 6 96662506 96662506 G A FUT9 3'UTR 0.12 TCGA-DX-A6BB-01 7 107353040 107353040 G A SLC26A4 Silent p.T764T 0.18 TCGA-DX-A6BB-01 8 59727987 59727987 C A TOX Missense_Mutation p.Q434H 0.23 tolerated(0.6) probably_damaging(0.965) TCGA-DX-A6BB-01 8 77768255 77768255 C G ZFHX4 Nonsense_Mutation p.S3033* 0.17 TCGA-DX-A6BB-01 8 82571002 82571002 C T IMPA1 3'Flank 0.16 TCGA-DX-A6BB-01 9 135976920 135976920 T C RALGDS Missense_Mutation p.Y814C 0.07 deleterious(0) unknown(0) TCGA-DX-A6BB-01 9 136521517 136521517 G C DBH Intron 0.07 TCGA-DX-A6BB-01 9 88247722 88247722 G T AGTPBP1 Missense_Mutation p.L584I 0.35 tolerated(0.17) benign(0.168) TCGA-DX-A6BB-01 9 96291677 96291677 G A FAM120A Missense_Mutation p.E517K 0.09 tolerated(0.54) benign(0.093) TCGA-DX-A6BB-01 X 153293422 153293422 G A MECP2 3'Flank 0.18 TCGA-DX-A6BE-01 10 116062107 116062107 T - AFAP1L2 Frame_Shift_Del p.N474Tfs*5 0.10 TCGA-DX-A6BE-01 11 61017218 61017218 C T PGA5 Missense_Mutation p.T284I 0.21 tolerated(0.26) probably_damaging(0.924) TCGA-DX-A6BE-01 11 72287876 72287876 T C PDE2A 3'UTR 0.24 TCGA-DX-A6BE-01 12 15704508 15704508 G T PTPRO Missense_Mutation p.V821L 0.15 deleterious(0.04) benign(0.004) TCGA-DX-A6BE-01 12 69053162 69053162 C T RAP1B 3'UTR 0.32 TCGA-DX-A6BE-01 12 73014948 73014948 T C TRHDE Missense_Mutation p.F799L 0.15 tolerated(0.3) benign(0.001) TCGA-DX-A6BE-01 12 79611315 79611315 C T SYT1 Missense_Mutation p.H6Y 0.23 tolerated_low_confidence(0.15) benign(0) TCGA-DX-A6BE-01 13 107821229 107821229 T C FAM155A 3'UTR 0.22 TCGA-DX-A6BE-01 14 31814465 31814465 A C HEATR5A Silent p.S669S 0.17 TCGA-DX-A6BE-01 16 85813472 85813472 C A EMC8 Missense_Mutation p.D159Y 0.16 tolerated(0.14) probably_damaging(0.985) TCGA-DX-A6BE-01 17 46675273 46675273 G A HOXB6 Silent p.F80F 0.17 TCGA-DX-A6BE-01 17 62049824 62049824 T C SCN4A Missense_Mutation p.I94V 0.15 tolerated(0.09) benign(0.011) TCGA-DX-A6BE-01 17 6943237 6943237 G C SLC16A13 Missense_Mutation p.D413H 0.64 deleterious(0.03) benign(0.417) TCGA-DX-A6BE-01 19 51844520 51844520 C G VSIG10L Missense_Mutation p.R261P 0.18 tolerated(0.1) possibly_damaging(0.599) TCGA-DX-A6BE-01 19 8386199 8386199 G T NDUFA7 Missense_Mutation p.A15E 0.28 deleterious(0.01) benign(0.373) TCGA-DX-A6BE-01 19 8495621 8495621 T A MARCH2 Missense_Mutation p.L151Q 0.28 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BE-01 19 9960201 9960201 C T PIN1 3'UTR 0.18 TCGA-DX-A6BE-01 19 9960266 9960266 C T PIN1 3'UTR 0.15 TCGA-DX-A6BE-01 19 9968504 9968504 C G OLFM2 Missense_Mutation p.E83Q 0.15 tolerated(0.06) benign(0.158) TCGA-DX-A6BE-01 1 152324804 152324804 G A FLG2 Missense_Mutation p.H1820Y 0.22 benign(0.437) TCGA-DX-A6BE-01 1 157666077 157666077 G A FCRL3 Silent p.T295T 0.28 TCGA-DX-A6BE-01 1 207222921 207222921 C T YOD1 Missense_Mutation p.S164N 0.15 deleterious(0) probably_damaging(0.995) TCGA-DX-A6BE-01 22 37678493 37678493 G T CYTH4 5'UTR 0.18 TCGA-DX-A6BE-01 2 226447163 226447163 G A NYAP2 Missense_Mutation p.V344M 0.18 deleterious(0.01) probably_damaging(0.928) TCGA-DX-A6BE-01 3 184300081 184300081 T C EPHB3 3'UTR 0.22 TCGA-DX-A6BE-01 5 137677046 137677046 C T FAM53C Nonsense_Mutation p.Q8* 0.18 TCGA-DX-A6BE-01 5 177310752 177310752 G T RP11-423H2.1 RNA 0.17 TCGA-DX-A6BE-01 5 68616304 68616304 C T CCDC125 Missense_Mutation p.D22N 0.13 deleterious(0) probably_damaging(0.99) TCGA-DX-A6BE-01 6 33144998 33144998 A C COL11A2 Missense_Mutation p.L573R 0.18 possibly_damaging(0.883) TCGA-DX-A6BE-01 6 73043350 73043350 G T RIMS1 Missense_Mutation p.R1393I 0.21 deleterious(0.02) benign(0.019) TCGA-DX-A6BE-01 7 18706061 18706061 G C HDAC9 Missense_Mutation p.E565Q 0.07 tolerated(0.29) benign(0.012) TCGA-DX-A6BE-01 7 33303966 33303966 G A BBS9 Missense_Mutation p.G228S 0.20 tolerated(0.73) benign(0.237) TCGA-DX-A6BE-01 8 2813223 2813223 G A CSMD1 Silent p.F3294F 0.18 TCGA-DX-A6BE-01 8 63659614 63659614 G A NKAIN3 Missense_Mutation p.V133I 0.17 tolerated(1) benign(0.048) TCGA-DX-A6BE-01 9 140777367 140777367 G A CACNA1B Intron 0.13 TCGA-DX-A6BE-01 9 77611400 77611400 C G C9orf41 Missense_Mutation p.W329C 0.17 deleterious(0.04) benign(0.093) TCGA-DX-A6BE-01 9 77611441 77611441 C G C9orf41 Missense_Mutation p.D316H 0.13 deleterious(0) probably_damaging(1) TCGA-DX-A6BE-01 X 12994978 12994978 T G TMSB4X 3'UTR 0.40 TCGA-DX-A6BE-01 X 12994979 12994979 T C TMSB4X 3'UTR 0.40 TCGA-DX-A6BF-01 10 13214625 13214626 - A MCM10 Frame_Shift_Ins p.E153Rfs*9 0.24 TCGA-DX-A6BF-01 10 24834028 24834028 G A KIAA1217 Missense_Mutation p.R1777H 0.16 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BF-01 10 5499691 5499691 G A NET1 3'UTR 0.06 TCGA-DX-A6BF-01 10 61551670 61551670 C T CCDC6 3'UTR 0.29 TCGA-DX-A6BF-01 10 90966518 90966518 C T CH25H Missense_Mutation p.E178K 0.29 deleterious(0.01) probably_damaging(1) TCGA-DX-A6BF-01 10 91344218 91344218 T C PANK1 Missense_Mutation p.Y581C 0.11 deleterious(0.01) probably_damaging(1) TCGA-DX-A6BF-01 10 95173 95173 C T TUBB8 Silent p.R2R 0.38 TCGA-DX-A6BF-01 11 102398334 102398334 C A MMP7 Missense_Mutation p.M135I 0.54 tolerated(0.1) benign(0.029) TCGA-DX-A6BF-01 11 1652009 1652009 G A KRTAP5-5 3'UTR 0.37 TCGA-DX-A6BF-01 11 61569844 61569844 C A FADS1 3'UTR 0.37 TCGA-DX-A6BF-01 11 61569925 61569925 C G FADS1 Missense_Mutation p.K488N 0.35 deleterious(0) probably_damaging(0.945) TCGA-DX-A6BF-01 11 63064875 63064875 C T SLC22A10 Missense_Mutation p.R203C 0.54 deleterious(0.01) probably_damaging(0.913) TCGA-DX-A6BF-01 11 78780916 78780916 G A TENM4 Missense_Mutation p.S25L 0.36 deleterious_low_confidence(0.04) possibly_damaging(0.85) TCGA-DX-A6BF-01 12 100926316 100926316 C T NR1H4 Nonsense_Mutation p.R186* 0.82 TCGA-DX-A6BF-01 12 15749553 15749553 A T PTPRO 3'UTR 0.07 TCGA-DX-A6BF-01 12 26985713 26985713 A C ITPR2 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-DX-A6BF-01 12 50050265 50050265 G T FMNL3 Silent p.V269V 0.45 TCGA-DX-A6BF-01 12 52708514 52708514 G A KRT83 Silent p.P461P 0.22 TCGA-DX-A6BF-01 12 58204272 58204272 C G AVIL Silent p.V207V 0.85 TCGA-DX-A6BF-01 12 58214522 58214522 C T CTDSP2 3'UTR 0.37 TCGA-DX-A6BF-01 12 58214526 58214526 C G CTDSP2 3'UTR 0.36 TCGA-DX-A6BF-01 12 58335516 58335525 GCCCCGCGGC - XRCC6BP1 Frame_Shift_Del p.G11Efs*44 0.21 TCGA-DX-A6BF-01 12 62931931 62931931 G T MON2 Missense_Mutation p.G725V 0.13 deleterious(0.04) benign(0.343) TCGA-DX-A6BF-01 12 63991687 63991687 G A DPY19L2 Missense_Mutation p.R455C 0.57 deleterious(0.01) benign(0.015) TCGA-DX-A6BF-01 12 66725161 66725161 G T HELB Silent p.P966P 0.16 TCGA-DX-A6BF-01 12 6760372 6760372 T A ING4 Nonsense_Mutation p.K247* 0.34 TCGA-DX-A6BF-01 12 69995179 69995179 G C CCT2 3'UTR 0.04 TCGA-DX-A6BF-01 12 70188274 70188274 C G RAB3IP Missense_Mutation p.L238V 0.06 deleterious(0.02) possibly_damaging(0.73) TCGA-DX-A6BF-01 12 71078009 71078009 C A PTPRR Silent p.T465T 0.04 TCGA-DX-A6BF-01 12 75678836 75678836 G A CAPS2 Silent p.L493L 0.21 TCGA-DX-A6BF-01 12 75905323 75905323 G A KRR1 Missense_Mutation p.R19C 0.27 deleterious(0) benign(0.386) TCGA-DX-A6BF-01 12 78515848 78515848 C A NAV3 Missense_Mutation p.S1293Y 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A6BF-01 12 86373276 86373276 C T MGAT4C Missense_Mutation p.A410T 0.05 tolerated(0.7) benign(0.004) TCGA-DX-A6BF-01 12 97043825 97043825 T G C12orf55 Missense_Mutation p.I1616S 0.16 deleterious(0) possibly_damaging(0.577) TCGA-DX-A6BF-01 13 36245479 36245479 G A NBEA 3'UTR 0.06 TCGA-DX-A6BF-01 14 20979050 20979050 C A RNASE10 Missense_Mutation p.F140L 0.28 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BF-01 14 24620802 24620802 C T RNF31 Missense_Mutation p.R616C 0.24 deleterious(0.01) possibly_damaging(0.696) TCGA-DX-A6BF-01 14 58063546 58063546 G A SLC35F4 Missense_Mutation p.L24F 0.31 tolerated_low_confidence(0.19) benign(0.005) TCGA-DX-A6BF-01 14 89623931 89623931 G A FOXN3 3'UTR 0.37 TCGA-DX-A6BF-01 14 94468031 94468031 A G LINC00521 RNA 0.33 TCGA-DX-A6BF-01 15 39885832 39885832 G A THBS1 Missense_Mutation p.R1077Q 0.27 deleterious(0) probably_damaging(1) TCGA-DX-A6BF-01 15 83826716 83826716 C T HDGFRP3 Missense_Mutation p.G80E 0.41 deleterious(0) probably_damaging(1) TCGA-DX-A6BF-01 16 2338234 2338234 G T ABCA3 Missense_Mutation p.P933T 0.24 deleterious(0.04) possibly_damaging(0.815) TCGA-DX-A6BF-01 16 67208964 67208964 G T NOL3 Missense_Mutation p.Q208H 0.26 deleterious_low_confidence(0.04) benign(0.069) TCGA-DX-A6BF-01 17 40931484 40931484 G T VPS25 3'UTR 0.33 TCGA-DX-A6BF-01 17 40934869 40934869 G A WNK4 Missense_Mutation p.D238N 0.29 deleterious(0) unknown(0) TCGA-DX-A6BF-01 17 61666657 61666664 TTACCAGA - DCAF7 3'UTR 0.21 TCGA-DX-A6BF-01 17 79872574 79872574 T C SIRT7 Missense_Mutation p.Q162R 0.55 tolerated(0.34) benign(0.001) TCGA-DX-A6BF-01 18 15325901 15325901 A T RNU6-721P 5'Flank 0.07 TCGA-DX-A6BF-01 19 14161662 14161662 C A IL27RA Missense_Mutation p.P499T 0.23 deleterious(0.04) probably_damaging(0.962) TCGA-DX-A6BF-01 19 14507287 14507287 T C CD97 Splice_Site p.X160_splice 0.29 TCGA-DX-A6BF-01 19 15271492 15271492 T C NOTCH3 Missense_Mutation p.K2316R 0.05 deleterious_low_confidence(0.04) probably_damaging(0.986) TCGA-DX-A6BF-01 19 29213569 29213569 T G AC005307.3 RNA 0.11 TCGA-DX-A6BF-01 19 40728317 40728317 G A CNTD2 3'UTR 0.37 TCGA-DX-A6BF-01 19 54823155 54823155 G T LILRA5 Missense_Mutation p.P130T 0.38 tolerated(0.1) benign(0.27) TCGA-DX-A6BF-01 19 9056656 9056656 T C MUC16 Missense_Mutation p.T10264A 0.28 benign(0.007) TCGA-DX-A6BF-01 19 9068845 9068845 T G MUC16 Missense_Mutation p.N6201H 0.38 unknown(0) TCGA-DX-A6BF-01 1 156180814 156180814 T A SLC25A44 3'UTR 0.18 TCGA-DX-A6BF-01 1 160580459 160580459 T G SLAMF1 3'UTR 0.11 TCGA-DX-A6BF-01 1 172378652 172378652 C G DNM3 3'UTR 0.05 TCGA-DX-A6BF-01 1 175372327 175372327 C T TNR Missense_Mutation p.E309K 0.60 tolerated(0.11) benign(0.297) TCGA-DX-A6BF-01 1 175372358 175372358 C T TNR Silent p.L298L 0.57 TCGA-DX-A6BF-01 1 175372402 175372402 C T TNR Missense_Mutation p.E284K 0.52 tolerated(0.36) benign(0.001) TCGA-DX-A6BF-01 1 204210828 204210828 C G PLEKHA6 Missense_Mutation p.A763P 0.30 tolerated(0.05) benign(0.421) TCGA-DX-A6BF-01 1 212798632 212798632 A T FAM71A Missense_Mutation p.Q138L 0.44 deleterious(0) possibly_damaging(0.56) TCGA-DX-A6BF-01 1 217955579 217955579 C T SPATA17 Missense_Mutation p.R263W 0.23 deleterious(0.03) benign(0.41) TCGA-DX-A6BF-01 1 247921188 247921188 A G OR1C1 Missense_Mutation p.I174T 0.18 deleterious(0) benign(0.378) TCGA-DX-A6BF-01 1 3418451 3418451 C A MEGF6 Silent p.S741S 0.34 TCGA-DX-A6BF-01 1 87570850 87570850 T C HS2ST1 3'UTR 0.32 TCGA-DX-A6BF-01 20 2591222 2591222 T G TMC2 Missense_Mutation p.L524R 0.14 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BF-01 21 34401346 34401346 T A OLIG2 3'UTR 0.10 TCGA-DX-A6BF-01 22 39387363 39387363 C T APOBEC3B Silent p.Y250Y 0.04 TCGA-DX-A6BF-01 2 179442717 179442717 A G TTN Missense_Mutation p.I22842T 0.32 TCGA-DX-A6BF-01 2 179733848 179733848 T C CCDC141 Missense_Mutation p.E797G 0.16 deleterious(0.01) probably_damaging(0.982) TCGA-DX-A6BF-01 2 208631288 208631288 A T FZD5 3'UTR 0.05 TCGA-DX-A6BF-01 2 218668646 218668646 G A TNS1 3'UTR 0.59 TCGA-DX-A6BF-01 2 219867612 219867612 C T CCDC108 3'UTR 0.23 TCGA-DX-A6BF-01 2 220098857 220098857 G A ANKZF1 Missense_Mutation p.E351K 0.26 tolerated(1) benign(0.003) TCGA-DX-A6BF-01 2 230683116 230683116 C T TRIP12 Silent p.L473L 0.67 TCGA-DX-A6BF-01 2 234545737 234545737 T - UGT1A10 Frame_Shift_Del p.V190Afs*6 0.22 TCGA-DX-A6BF-01 2 29456563 29456563 C G ALK Splice_Site p.X786_splice 0.31 TCGA-DX-A6BF-01 3 119900165 119900165 C A GPR156 Missense_Mutation p.G247V 0.36 deleterious(0) benign(0.366) TCGA-DX-A6BF-01 3 140401456 140401456 T C TRIM42 Missense_Mutation p.L165P 0.21 deleterious(0) probably_damaging(0.949) TCGA-DX-A6BF-01 3 169482775 169482775 G A ACTRT3 3'Flank 0.22 TCGA-DX-A6BF-01 3 185655824 185655824 G C TRA2B 5'UTR 0.29 TCGA-DX-A6BF-01 3 186299271 186299271 G C DNAJB11 Missense_Mutation p.E190Q 0.21 tolerated(1) benign(0.012) TCGA-DX-A6BF-01 3 52643669 52643669 A T PBRM1 Missense_Mutation p.S743T 0.42 deleterious(0) benign(0.223) TCGA-DX-A6BF-01 3 63981233 63981233 C T ATXN7 Missense_Mutation p.H579Y 0.41 deleterious(0) possibly_damaging(0.761) TCGA-DX-A6BF-01 3 67059076 67059076 T G KBTBD8 3'UTR 0.07 TCGA-DX-A6BF-01 3 81548345 81548345 T C GBE1 Silent p.E656E 0.33 TCGA-DX-A6BF-01 3 86987502 86987502 A G VGLL3 3'UTR 0.23 TCGA-DX-A6BF-01 4 114213629 114213629 G A ANK2 Missense_Mutation p.V779I 0.04 benign(0.016) TCGA-DX-A6BF-01 4 146057761 146057761 G T OTUD4 3'UTR 0.18 TCGA-DX-A6BF-01 4 146058483 146058483 G C OTUD4 3'UTR 0.32 TCGA-DX-A6BF-01 4 177609025 177609025 C T VEGFC Missense_Mutation p.C254Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BF-01 4 46370899 46370899 T C GABRA2 Intron 0.08 TCGA-DX-A6BF-01 4 862361 862361 G A GAK Silent p.D787D 0.45 TCGA-DX-A6BF-01 5 134164672 134164672 T G DDX46 3'UTR 0.19 TCGA-DX-A6BF-01 5 140855709 140855709 G C PCDHGC3 Missense_Mutation p.G9A 0.30 tolerated(0.85) benign(0.199) TCGA-DX-A6BF-01 5 153078447 153078447 C G GRIA1 Silent p.L432L 0.19 TCGA-DX-A6BF-01 5 26988429 26988429 G T CDH9 Nonsense_Mutation p.Y4* 0.33 TCGA-DX-A6BF-01 6 135515004 135515004 C A MYB Missense_Mutation p.A264E 0.32 tolerated(0.23) probably_damaging(0.995) TCGA-DX-A6BF-01 6 74000787 74000787 C A KHDC1 Intron 0.22 TCGA-DX-A6BF-01 6 97561755 97561755 C A KLHL32 Missense_Mutation p.H242N 0.36 tolerated(0.31) probably_damaging(0.996) TCGA-DX-A6BF-01 7 122526253 122526253 G T CADPS2 Missense_Mutation p.R47S 0.41 tolerated(1) benign(0.007) TCGA-DX-A6BF-01 7 30721617 30721617 C T CRHR2 Missense_Mutation p.G75E 0.55 deleterious_low_confidence(0) benign(0.388) TCGA-DX-A6BF-01 7 30721622 30721622 C G CRHR2 Missense_Mutation p.Q73H 0.55 tolerated(0.12) possibly_damaging(0.789) TCGA-DX-A6BF-01 7 66274900 66274900 C T KCTD7 3'UTR 0.12 TCGA-DX-A6BF-01 7 75616585 75616585 G C POR 3'Flank 0.24 TCGA-DX-A6BF-01 7 90355898 90355898 G A CDK14 Missense_Mutation p.M29I 0.20 deleterious_low_confidence(0.03) benign(0.216) TCGA-DX-A6BF-01 8 11853731 11853731 A G DEFB134 Silent p.F10F 0.16 TCGA-DX-A6BF-01 8 143693600 143693600 G A ARC 3'UTR 0.75 TCGA-DX-A6BF-01 8 40532319 40532319 G T ZMAT4 Missense_Mutation p.Q161K 0.17 tolerated(0.14) possibly_damaging(0.575) TCGA-DX-A6BF-01 8 59851920 59851920 T A TOX Missense_Mutation p.I118F 0.38 deleterious(0.01) possibly_damaging(0.888) TCGA-DX-A6BF-01 9 107360878 107360878 A G OR13C5 Silent p.L273L 0.15 TCGA-DX-A6BF-01 9 38595594 38595594 A C ANKRD18A Silent p.L581L 0.16 TCGA-DX-A6BF-01 X 118221164 118221164 C T KIAA1210 Silent p.Q1343Q 0.20 TCGA-DX-A6BF-01 X 139586328 139586328 G A SOX3 Missense_Mutation p.H300Y 0.36 deleterious(0.04) probably_damaging(0.932) TCGA-DX-A6BF-01 X 139586329 139586329 C T SOX3 Missense_Mutation p.M299I 0.36 deleterious(0.01) benign(0.213) TCGA-DX-A6BF-01 X 51636726 51636726 C G MAGED1 5'Flank 0.31 TCGA-DX-A6BG-01 10 118689409 118689409 T C KIAA1598 Silent p.E321E 0.12 TCGA-DX-A6BG-01 10 64914157 64914157 G A NRBF2 3'UTR 0.10 TCGA-DX-A6BG-01 11 71817175 71817175 G A LRTOMT Missense_Mutation p.G93S 0.05 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BG-01 12 70983878 70983878 T A PTPRB Missense_Mutation p.N639I 0.03 deleterious(0) probably_damaging(0.996) TCGA-DX-A6BG-01 13 113826312 113826312 T C PROZ Missense_Mutation p.F388L 0.17 deleterious(0) probably_damaging(1) TCGA-DX-A6BG-01 13 39265060 39265060 G A FREM2 Missense_Mutation p.M1193I 0.17 tolerated(1) benign(0) TCGA-DX-A6BG-01 14 89338756 89338756 A T TTC8 Missense_Mutation p.N436I 0.15 deleterious(0) probably_damaging(0.996) TCGA-DX-A6BG-01 15 90617472 90617472 G A ZNF710 Missense_Mutation p.R592Q 0.10 deleterious(0) probably_damaging(0.988) TCGA-DX-A6BG-01 17 29560033 29560033 C G NF1 Missense_Mutation p.H1170Q 0.10 deleterious(0) probably_damaging(0.942) TCGA-DX-A6BG-01 17 36104586 36104586 G A HNF1B Missense_Mutation p.A97V 0.10 deleterious(0.03) benign(0.008) TCGA-DX-A6BG-01 18 22804482 22804482 C G ZNF521 Missense_Mutation p.G1134R 0.11 tolerated_low_confidence(0.41) benign(0.003) TCGA-DX-A6BG-01 1 152286042 152286042 G A FLG Silent p.H440H 0.07 TCGA-DX-A6BG-01 1 75078322 75078322 G - C1orf173 Frame_Shift_Del p.S391Yfs*34 0.16 TCGA-DX-A6BG-01 20 57227113 57227113 C T STX16 Silent p.S17S 0.15 TCGA-DX-A6BG-01 20 61431821 61431821 A G MRGBP 3'UTR 0.12 TCGA-DX-A6BG-01 2 172966994 172966994 C G DLX2 Missense_Mutation p.Q91H 0.10 tolerated(0.05) benign(0.072) TCGA-DX-A6BG-01 2 201822167 201822167 T C ORC2 Silent p.L65L 0.05 TCGA-DX-A6BG-01 3 45048925 45048925 A T EXOSC7 Missense_Mutation p.H210L 0.10 tolerated(0.61) benign(0.114) TCGA-DX-A6BG-01 3 52720152 52720152 G C GNL3 Intron 0.11 TCGA-DX-A6BG-01 4 129794437 129794437 A G JADE1 3'UTR 0.04 TCGA-DX-A6BG-01 5 139936756 139936756 C T SRA1 Missense_Mutation p.A55T 0.06 tolerated(0.14) possibly_damaging(0.801) TCGA-DX-A6BG-01 6 32940295 32940295 C G BRD2 5'UTR 0.13 TCGA-DX-A6BG-01 6 52850266 52850266 G A GSTA4 Silent p.N85N 0.08 TCGA-DX-A6BG-01 6 82457782 82457782 T C FAM46A 3'UTR 0.13 TCGA-DX-A6BG-01 9 136901295 136901295 T C BRD3 Missense_Mutation p.I599V 0.06 deleterious(0) possibly_damaging(0.651) TCGA-DX-A6BG-01 9 96030314 96030326 TCCCAAGCCAACG - WNK2 Frame_Shift_Del p.S1294Pfs*38 0.13 TCGA-DX-A6BG-01 X 29301312 29301312 G A IL1RAPL1 Missense_Mutation p.G114S 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A6BH-01 11 124310339 124310339 A G OR8B8 Missense_Mutation p.F215L 0.09 tolerated_low_confidence(0.23) benign(0.248) TCGA-DX-A6BH-01 11 22363276 22363276 G A SLC17A6 Missense_Mutation p.D97N 0.10 tolerated(0.28) benign(0.043) TCGA-DX-A6BH-01 11 7110476 7110476 A G RBMXL2 Missense_Mutation p.D42G 0.08 deleterious(0.02) probably_damaging(0.99) TCGA-DX-A6BH-01 12 58002321 58002321 G A DTX3 Missense_Mutation p.G257R 0.44 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BH-01 12 58156776 58156776 C A CYP27B1 3'UTR 0.05 TCGA-DX-A6BH-01 13 33002289 33002289 G A N4BP2L1 5'UTR 0.36 TCGA-DX-A6BH-01 14 101347411 101347411 C T RTL1 Missense_Mutation p.D1239N 0.34 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-DX-A6BH-01 15 35044752 35044752 C T GJD2 Missense_Mutation p.R298H 0.26 tolerated(0.06) probably_damaging(0.951) TCGA-DX-A6BH-01 17 5253801 5253801 G A RABEP1 Nonsense_Mutation p.W280* 0.09 TCGA-DX-A6BH-01 17 64179366 64179366 C G CEP112 Missense_Mutation p.D18H 0.05 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BH-01 17 7222450 7222450 G A NEURL4 Silent p.L1201L 0.48 TCGA-DX-A6BH-01 1 152009423 152009423 G A S100A11 5'UTR 0.44 TCGA-DX-A6BH-01 1 179783087 179783087 G T FAM163A Silent p.G89G 0.42 TCGA-DX-A6BH-01 2 113090109 113090109 C G ZC3H6 3'UTR 0.41 TCGA-DX-A6BH-01 3 22424366 22424366 G T HMGB1P5 RNA 0.22 TCGA-DX-A6BH-01 4 100521804 100521804 G A MTTP Missense_Mutation p.D384N 0.38 tolerated(0.24) benign(0.101) TCGA-DX-A6BH-01 6 146755088 146755088 C A GRM1 Missense_Mutation p.S914Y 0.02 deleterious(0) probably_damaging(0.932) TCGA-DX-A6BH-01 6 146756775 146756775 C A GRM1 3'UTR 0.03 TCGA-DX-A6BH-01 6 32188317 32188317 C T NOTCH4 Missense_Mutation p.V342M 0.49 tolerated(0.08) probably_damaging(1) TCGA-DX-A6BH-01 6 41745817 41745817 G A FRS3 5'UTR 0.17 TCGA-DX-A6BH-01 9 130493785 130493785 A G TTC16 3'UTR 0.21 TCGA-DX-A6BH-01 X 153591107 153591107 C T FLNA Missense_Mutation p.G776S 0.71 deleterious(0) probably_damaging(1) TCGA-DX-A6BK-01 11 64572627 64572627 A - MEN1 Frame_Shift_Del p.F415Sfs*35 0.23 TCGA-DX-A6BK-01 12 32751500 32751500 C T FGD4 Nonsense_Mutation p.R224* 0.21 TCGA-DX-A6BK-01 12 5023079 5023079 T G KCNA1 3'UTR 0.05 TCGA-DX-A6BK-01 12 56552164 56552164 C G MYL6 5'UTR 0.19 TCGA-DX-A6BK-01 12 6153547 6153547 T C VWF Silent p.E784E 0.09 TCGA-DX-A6BK-01 13 42044874 42044874 C T RGCC 3'UTR 0.05 TCGA-DX-A6BK-01 13 46549453 46549453 C G ZC3H13 Missense_Mutation p.R811S 0.07 unknown(0) TCGA-DX-A6BK-01 15 26792633 26792633 A G GABRB3 3'UTR 0.14 TCGA-DX-A6BK-01 15 28359945 28359945 C T HERC2 Missense_Mutation p.D4576N 0.20 probably_damaging(0.999) TCGA-DX-A6BK-01 15 77242175 77242175 T C RCN2 3'UTR 0.07 TCGA-DX-A6BK-01 15 99501844 99501844 C A IGF1R 3'UTR 0.20 TCGA-DX-A6BK-01 16 20817874 20817874 G C AC004381.6 5'UTR 0.18 TCGA-DX-A6BK-01 16 49412407 49412407 C T C16orf78 Silent p.D99D 0.14 TCGA-DX-A6BK-01 17 15207230 15207230 C T TEKT3 3'UTR 0.10 TCGA-DX-A6BK-01 17 1578556 1578556 T A PRPF8 Missense_Mutation p.M984L 0.06 tolerated(0.56) benign(0) TCGA-DX-A6BK-01 17 39623131 39623131 G T KRT32 Silent p.T149T 0.20 TCGA-DX-A6BK-01 17 43507621 43507621 C T ARHGAP27 5'Flank 0.12 TCGA-DX-A6BK-01 17 61950102 61950102 C T CSH2 Splice_Site p.X98_splice 0.06 TCGA-DX-A6BK-01 17 650858 650858 T G GEMIN4 Missense_Mutation p.E142A 0.21 tolerated(0.08) benign(0.297) TCGA-DX-A6BK-01 18 43704811 43704811 G C HAUS1 Missense_Mutation p.Q230H 0.85 deleterious(0) probably_damaging(0.943) TCGA-DX-A6BK-01 18 50450207 50450207 C T DCC Silent p.G276G 0.10 TCGA-DX-A6BK-01 19 11657659 11657659 G A CNN1 Missense_Mutation p.G89S 0.07 tolerated(0.76) possibly_damaging(0.654) TCGA-DX-A6BK-01 19 12917465 12917465 C G RNASEH2A 5'UTR 0.09 TCGA-DX-A6BK-01 19 14204564 14204564 A T PRKACA Missense_Mutation p.L269Q 0.14 deleterious(0) probably_damaging(0.995) TCGA-DX-A6BK-01 19 15224786 15224786 G A SYDE1 3'UTR 0.27 TCGA-DX-A6BK-01 19 15289650 15289650 G A NOTCH3 Missense_Mutation p.T1274I 0.07 tolerated(1) benign(0.005) TCGA-DX-A6BK-01 19 15918231 15918231 G A OR10H1 Missense_Mutation p.T206M 0.25 tolerated(0.25) benign(0.034) TCGA-DX-A6BK-01 19 39214576 39214576 G C ACTN4 Splice_Site p.X518_splice 0.26 TCGA-DX-A6BK-01 19 39214715 39214715 G C ACTN4 Missense_Mutation p.E564Q 0.33 tolerated(1) benign(0.001) TCGA-DX-A6BK-01 19 39694754 39694754 G A SYCN Silent p.P47P 0.18 TCGA-DX-A6BK-01 19 42848629 42848629 C T MEGF8 Silent p.L609L 0.10 TCGA-DX-A6BK-01 19 42848664 42848664 C T MEGF8 Silent p.S620S 0.14 TCGA-DX-A6BK-01 19 52097256 52097256 T C AC018755.1 Missense_Mutation p.I107V 0.09 benign(0.068) TCGA-DX-A6BK-01 19 54720853 54720853 A G LILRB3 3'UTR 0.11 TCGA-DX-A6BK-01 1 160342265 160342265 C T NHLH1 3'UTR 0.07 TCGA-DX-A6BK-01 20 30584994 30584994 C T XKR7 Missense_Mutation p.R492C 0.20 deleterious(0) possibly_damaging(0.836) TCGA-DX-A6BK-01 20 34220147 34220147 G A CPNE1 Nonsense_Mutation p.Q137* 0.17 TCGA-DX-A6BK-01 20 39793948 39793948 A T PLCG1 Missense_Mutation p.N484Y 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-DX-A6BK-01 21 44453507 44453507 T G PKNOX1 3'UTR 0.16 TCGA-DX-A6BK-01 21 45877346 45877346 T A LRRC3 3'UTR 0.10 TCGA-DX-A6BK-01 21 46908330 46908330 A G COL18A1 Splice_Site p.X813_splice 0.09 TCGA-DX-A6BK-01 2 179598194 179598194 C A TTN Missense_Mutation p.D5276Y 0.24 TCGA-DX-A6BK-01 2 228883090 228883090 G T SPHKAP Missense_Mutation p.T827K 0.21 tolerated(1) benign(0) TCGA-DX-A6BK-01 2 73316055 73316055 G C RAB11FIP5 Missense_Mutation p.L274V 0.11 tolerated(0.3) benign(0.214) TCGA-DX-A6BK-01 3 10368910 10368910 A - ATP2B2 3'UTR 0.10 TCGA-DX-A6BK-01 3 128198505 128198505 C T GATA2 3'UTR 0.17 TCGA-DX-A6BK-01 3 182937682 182937682 T A MCF2L2 Missense_Mutation p.M778L 0.15 tolerated(1) benign(0) TCGA-DX-A6BK-01 3 49714115 49714115 G A APEH Missense_Mutation p.R273H 0.09 tolerated(0.14) possibly_damaging(0.731) TCGA-DX-A6BK-01 4 17706653 17706653 G A FAM184B Silent p.S449S 0.16 TCGA-DX-A6BK-01 4 2958424 2958424 C T NOP14 Missense_Mutation p.D149N 0.12 deleterious(0.01) probably_damaging(0.924) TCGA-DX-A6BK-01 5 37058990 37058990 C T NIPBL Intron 0.19 TCGA-DX-A6BK-01 5 38431329 38431329 G A EGFLAM Missense_Mutation p.R702H 0.14 deleterious(0) probably_damaging(0.983) TCGA-DX-A6BK-01 6 100838449 100838449 T G SIM1 Missense_Mutation p.N697H 0.17 tolerated_low_confidence(0.07) benign(0.121) TCGA-DX-A6BK-01 6 28543143 28543143 C G SCAND3 Missense_Mutation p.V447L 0.08 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-DX-A6BK-01 6 35448124 35448124 G T TEAD3 Silent p.R99R 0.13 TCGA-DX-A6BK-01 6 41197265 41197265 C G TREML4 Missense_Mutation p.T134S 0.22 tolerated(0.37) benign(0.085) TCGA-DX-A6BK-01 7 100470808 100470808 G A TRIP6 Silent p.L438L 0.19 TCGA-DX-A6BK-01 7 143048760 143048760 C T CLCN1 Missense_Mutation p.T890M 0.07 deleterious(0) possibly_damaging(0.587) TCGA-DX-A6BK-01 7 149461818 149461818 G C ZNF467 Silent p.P591P 0.10 TCGA-DX-A6BK-01 7 152551778 152551778 G A ACTR3B 3'UTR 0.27 TCGA-DX-A6BK-01 7 57528451 57528451 A T ZNF716 Missense_Mutation p.Q95L 0.19 deleterious(0) possibly_damaging(0.523) TCGA-DX-A6BK-01 7 62752385 62752385 C T ZNF733P RNA 0.06 TCGA-DX-A6BK-01 7 82585951 82585951 C A PCLO Nonsense_Mutation p.E1440* 0.08 TCGA-DX-A6BK-01 8 102698815 102698815 C G NCALD 3'UTR 0.19 TCGA-DX-A6BK-01 8 10467754 10467754 G A RP1L1 Missense_Mutation p.A1285V 0.09 benign(0.097) TCGA-DX-A6BK-01 8 110487369 110487369 G T PKHD1L1 Missense_Mutation p.Q2876H 0.13 tolerated(0.16) benign(0.005) TCGA-DX-A6BK-01 8 145160568 145160568 G A MAF1 5'UTR 0.21 TCGA-DX-A6BK-01 8 145577698 145577698 C T TMEM249 Missense_Mutation p.V120M 0.17 tolerated(0.67) benign(0.009) TCGA-DX-A6BK-01 8 24366086 24366086 C T ADAM7 3'UTR 0.09 TCGA-DX-A6BK-01 8 55540336 55540336 C T RP1 Silent p.F1298F 0.07 TCGA-DX-A6BK-01 8 87473472 87473472 A G WWP1 Missense_Mutation p.N840S 0.20 tolerated(0.07) probably_damaging(0.998) TCGA-DX-A6BK-01 9 101891184 101891184 G A TGFBR1 Missense_Mutation p.V49M 0.06 tolerated(0.27) benign(0.015) TCGA-DX-A6BK-01 9 133914292 133914292 C T LAMC3 Missense_Mutation p.R340W 0.17 tolerated(0.23) benign(0.081) TCGA-DX-A6BK-01 9 135505766 135505766 C A DDX31 Nonsense_Mutation p.E611* 0.07 TCGA-DX-A6BK-01 9 19087122 19087122 G C HAUS6 Missense_Mutation p.S206C 0.17 deleterious(0.01) probably_damaging(0.957) TCGA-DX-A6BK-01 9 36390529 36390529 G A RNF38 Missense_Mutation p.P33S 0.14 tolerated_low_confidence(1) unknown(0) TCGA-DX-A6BK-01 9 36390530 36390530 G A RNF38 Silent p.F32F 0.12 TCGA-DX-A6BK-01 9 36390607 36390607 G A RNF38 Missense_Mutation p.P7S 0.12 deleterious_low_confidence(0) benign(0) TCGA-DX-A6BK-01 9 371452 371452 G A DOCK8 Silent p.V631V 0.17 TCGA-DX-A6BK-01 9 371527 371527 G A DOCK8 Silent p.Q656Q 0.23 TCGA-DX-A6BK-01 9 371546 371546 G A DOCK8 Missense_Mutation p.E663K 0.26 deleterious(0) probably_damaging(0.999) TCGA-DX-A6BK-01 X 129147217 129147217 G A BCORL1 Missense_Mutation p.A157T 0.23 unknown(0) TCGA-DX-A6BK-01 X 153197421 153197421 G A NAA10 Intron 0.19 TCGA-DX-A6BK-01 X 19398277 19398277 C T MAP3K15 Silent p.P850P 0.12 TCGA-DX-A6BK-01 X 48762624 48762624 C T SLC35A2 Missense_Mutation p.G188S 0.13 tolerated(0.59) benign(0.019) TCGA-DX-A6BK-01 X 49114812 49114812 G A FOXP3 Nonsense_Mutation p.R51* 0.11 TCGA-DX-A6YQ-01 10 104121645 104121645 G C GBF1 Missense_Mutation p.E553D 0.65 tolerated(0.08) benign(0.253) TCGA-DX-A6YQ-01 10 133976760 133976760 G T JAKMIP3 Missense_Mutation p.E754D 0.77 tolerated(0.18) benign(0.018) TCGA-DX-A6YQ-01 10 45799437 45799437 C A OR13A1 Missense_Mutation p.C145F 0.55 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YQ-01 10 70980216 70980216 T C HKDC1 Missense_Mutation p.F9L 0.67 tolerated(0.26) benign(0.001) TCGA-DX-A6YQ-01 10 98109509 98109509 T G OPALIN Silent p.L49L 0.57 TCGA-DX-A6YQ-01 12 32795776 32795776 G A FGD4 3'UTR 0.50 TCGA-DX-A6YQ-01 13 107822972 107822972 A T FAM155A Missense_Mutation p.L417H 0.21 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YQ-01 14 106173789 106173789 C T IGHA1 Missense_Mutation p.V260M 0.25 deleterious(0) probably_damaging(0.997) TCGA-DX-A6YQ-01 14 19559063 19559063 G C POTEG Missense_Mutation p.E237Q 0.11 tolerated(0.32) possibly_damaging(0.565) TCGA-DX-A6YQ-01 14 75201721 75201721 G T FCF1 3'UTR 0.62 TCGA-DX-A6YQ-01 14 75201722 75201722 G T FCF1 3'UTR 0.60 TCGA-DX-A6YQ-01 15 35045464 35045464 C A GJD2 Missense_Mutation p.G61C 0.38 deleterious(0) probably_damaging(1) TCGA-DX-A6YQ-01 16 69353364 69353364 G A VPS4A Missense_Mutation p.V180M 0.36 deleterious(0) probably_damaging(0.997) TCGA-DX-A6YQ-01 16 76513331 76513331 C T CNTNAP4 Missense_Mutation p.S520L 0.34 deleterious(0) possibly_damaging(0.792) TCGA-DX-A6YQ-01 17 10248638 10248638 G C MYH13 Missense_Mutation p.Q489E 0.11 deleterious(0) probably_damaging(0.984) TCGA-DX-A6YQ-01 17 10351814 10351814 G T MYH4 Missense_Mutation p.Q1519K 0.17 deleterious(0.02) possibly_damaging(0.723) TCGA-DX-A6YQ-01 17 41478391 41478391 A G ARL4D 3'UTR 0.07 TCGA-DX-A6YQ-01 17 42857541 42857541 G T ADAM11 3'UTR 0.13 TCGA-DX-A6YQ-01 17 68128480 68128480 G A KCNJ16 Silent p.S84S 0.71 TCGA-DX-A6YQ-01 17 73750863 73750863 G T ITGB4 Missense_Mutation p.D1509Y 0.47 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-DX-A6YQ-01 19 14910160 14910160 T C OR7C1 Silent p.A263A 0.56 TCGA-DX-A6YQ-01 19 17040028 17040028 G A CPAMD8 Silent p.P1003P 0.23 TCGA-DX-A6YQ-01 19 34264340 34264340 T C CHST8 3'UTR 0.55 TCGA-DX-A6YQ-01 19 41383146 41383146 C T CYP2A7 Silent p.L370L 0.07 TCGA-DX-A6YQ-01 19 44622636 44622636 G T ZNF225 Silent p.G48G 0.24 TCGA-DX-A6YQ-01 19 44622637 44622637 C T ZNF225 Missense_Mutation p.H49Y 0.24 tolerated(0.11) possibly_damaging(0.521) TCGA-DX-A6YQ-01 19 51017057 51017057 C A ASPDH Missense_Mutation p.R8S 0.13 deleterious(0) benign(0.074) TCGA-DX-A6YQ-01 19 51021902 51021902 C G LRRC4B Missense_Mutation p.Q356H 0.42 tolerated(0.06) benign(0.007) TCGA-DX-A6YQ-01 19 52954520 52954520 G A ZNF578 5'Flank 0.16 TCGA-DX-A6YQ-01 19 56220321 56220321 G C NLRP9 Missense_Mutation p.P978R 0.21 deleterious(0.02) possibly_damaging(0.844) TCGA-DX-A6YQ-01 19 58427847 58427847 G C ZNF417 5'UTR 0.20 TCGA-DX-A6YQ-01 19 5843721 5843721 C A FUT3 3'UTR 0.25 TCGA-DX-A6YQ-01 1 103343415 103343415 G C COL11A1 3'UTR 0.24 TCGA-DX-A6YQ-01 1 11850530 11850531 AG - MTHFR 3'UTR 0.13 TCGA-DX-A6YQ-01 1 153271624 153271624 A G PGLYRP3 Missense_Mutation p.I271T 0.25 deleterious(0.02) possibly_damaging(0.882) TCGA-DX-A6YQ-01 1 17707595 17707595 C A PADI6 RNA 0.38 TCGA-DX-A6YQ-01 1 186151337 186151337 T G HMCN1 Missense_Mutation p.H5444Q 0.40 probably_damaging(0.942) TCGA-DX-A6YQ-01 1 1959608 1959608 G A GABRD Missense_Mutation p.E190K 0.41 tolerated(0.07) probably_damaging(0.998) TCGA-DX-A6YQ-01 1 204393199 204393199 A C PIK3C2B 3'UTR 0.35 TCGA-DX-A6YQ-01 1 245017533 245017533 C T HNRNPU 3'UTR 0.12 TCGA-DX-A6YQ-01 1 28503185 28503185 C G PTAFR 5'UTR 0.27 TCGA-DX-A6YQ-01 1 64680503 64680503 G A UBE2U Missense_Mutation p.M115I 0.45 deleterious(0.01) benign(0.135) TCGA-DX-A6YQ-01 1 7796530 7796530 G A CAMTA1 Missense_Mutation p.G1065R 0.13 deleterious(0) probably_damaging(1) TCGA-DX-A6YQ-01 20 19702869 19702869 C T SLC24A3 3'UTR 0.19 TCGA-DX-A6YQ-01 20 2442576 2442576 C T SNRPB Intron 0.23 TCGA-DX-A6YQ-01 20 41419840 41419840 A G PTPRT Missense_Mutation p.Y161H 0.23 deleterious(0) probably_damaging(0.997) TCGA-DX-A6YQ-01 20 43384180 43384180 G A RIMS4 3'Flank 0.24 TCGA-DX-A6YQ-01 20 56090832 56090832 C A CTCFL Missense_Mutation p.C373F 0.35 tolerated(0.7) benign(0.242) TCGA-DX-A6YQ-01 21 31654526 31654526 C T KRTAP24-1 Missense_Mutation p.R242K 0.17 tolerated(0.07) benign(0.364) TCGA-DX-A6YQ-01 21 41416026 41416026 C T DSCAM Missense_Mutation p.V1788I 0.50 tolerated(0.16) benign(0.14) TCGA-DX-A6YQ-01 22 29169758 29169758 G C CCDC117 Missense_Mutation p.E77D 0.37 tolerated(0.56) benign(0.388) TCGA-DX-A6YQ-01 22 29885939 29885939 G A NEFH Silent p.A770A 0.22 TCGA-DX-A6YQ-01 22 30032860 30032860 A T NF2 Nonsense_Mutation p.K79* 0.76 TCGA-DX-A6YQ-01 22 37334065 37334065 G C CSF2RB Missense_Mutation p.D739H 0.75 tolerated(0.22) benign(0.048) TCGA-DX-A6YQ-01 22 40391373 40391373 C T FAM83F Silent p.P109P 0.39 TCGA-DX-A6YQ-01 22 40762509 40762509 G A ADSL Missense_Mutation p.A480T 0.45 deleterious(0.05) benign(0.046) TCGA-DX-A6YQ-01 22 41642614 41642614 T C RANGAP1 Missense_Mutation p.K586R 0.20 tolerated(0.44) benign(0.007) TCGA-DX-A6YQ-01 22 42776542 42776542 T C NFAM1 3'UTR 0.67 TCGA-DX-A6YQ-01 2 136570168 136570168 C T LCT Missense_Mutation p.R689H 0.65 tolerated(0.07) benign(0.159) TCGA-DX-A6YQ-01 2 216965176 216965176 A T TMEM169 Missense_Mutation p.S269C 0.53 deleterious(0.01) probably_damaging(0.997) TCGA-DX-A6YQ-01 2 218999768 218999768 G A CXCR2 Missense_Mutation p.V82I 0.65 tolerated(0.13) benign(0.02) TCGA-DX-A6YQ-01 2 220424007 220424007 C T OBSL1 Missense_Mutation p.G1056R 0.50 deleterious(0.02) possibly_damaging(0.884) TCGA-DX-A6YQ-01 2 242149951 242149951 C G ANO7 Missense_Mutation p.I563M 0.56 deleterious(0) possibly_damaging(0.595) TCGA-DX-A6YQ-01 2 98428883 98428883 C A TMEM131 Splice_Site p.X621_splice 0.63 TCGA-DX-A6YQ-01 3 101481976 101481976 C T CEP97 Intron 0.35 TCGA-DX-A6YQ-01 3 113955795 113955795 C T ZNF80 Missense_Mutation p.V43I 0.17 tolerated(1) benign(0.005) TCGA-DX-A6YQ-01 3 37070375 37070375 A T MLH1 Missense_Mutation p.T504S 0.67 tolerated(0.1) benign(0.012) TCGA-DX-A6YQ-01 3 89531163 89531163 A G EPHA3 3'UTR 0.86 TCGA-DX-A6YQ-01 3 9034675 9034675 G T SRGAP3 Missense_Mutation p.L825M 0.14 tolerated(0.22) possibly_damaging(0.459) TCGA-DX-A6YQ-01 4 141489848 141489848 G T UCP1 Silent p.T12T 0.21 TCGA-DX-A6YQ-01 4 144442729 144442731 AAC - SMARCA5 In_Frame_Del p.N134del 0.37 TCGA-DX-A6YQ-01 4 75041117 75041117 C T MTHFD2L Missense_Mutation p.P150S 0.20 deleterious(0.01) probably_damaging(0.94) TCGA-DX-A6YQ-01 5 132902896 132902896 A G FSTL4 Silent p.F47F 0.17 TCGA-DX-A6YQ-01 5 134094593 134094593 G A DDX46 5'UTR 0.51 TCGA-DX-A6YQ-01 5 137226243 137226243 C A PKD2L2 Nonsense_Mutation p.Y35* 0.27 TCGA-DX-A6YQ-01 5 140187880 140187880 G A PCDHA4 Missense_Mutation p.A370T 0.08 tolerated_low_confidence(0.08) benign(0.08) TCGA-DX-A6YQ-01 5 170351370 170351370 A T RANBP17 Missense_Mutation p.L428F 0.28 deleterious(0.03) probably_damaging(0.995) TCGA-DX-A6YQ-01 5 174157514 174157515 - A MSX2 3'UTR 0.26 TCGA-DX-A6YQ-01 5 33463875 33463875 C T TARS Missense_Mutation p.P651L 0.61 deleterious(0) possibly_damaging(0.887) TCGA-DX-A6YQ-01 6 29342525 29342525 C T OR12D3 Silent p.K180K 0.15 TCGA-DX-A6YQ-01 6 54805724 54805724 A G FAM83B Missense_Mutation p.K652R 0.24 tolerated(0.11) benign(0.038) TCGA-DX-A6YQ-01 6 89907776 89907776 G A GABRR1 Missense_Mutation p.R179W 0.64 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YQ-01 6 99873377 99873377 T - PNISR 5'Flank 0.19 TCGA-DX-A6YQ-01 7 104758460 104758460 C T SRPK2 Missense_Mutation p.R642Q 0.33 deleterious(0.02) possibly_damaging(0.449) TCGA-DX-A6YQ-01 7 111617310 111617310 G A DOCK4 Missense_Mutation p.T193I 0.52 tolerated(0.22) benign(0.365) TCGA-DX-A6YQ-01 7 116340033 116340033 A T MET Missense_Mutation p.I299F 0.10 tolerated(0.08) probably_damaging(0.997) TCGA-DX-A6YQ-01 7 142459862 142459862 C T PRSS1 Silent p.N146N 0.52 TCGA-DX-A6YQ-01 7 21631081 21631081 C A DNAH11 Silent p.P851P 0.19 TCGA-DX-A6YQ-01 7 63538202 63538202 G A ZNF727 Missense_Mutation p.E259K 0.57 tolerated(0.14) probably_damaging(0.983) TCGA-DX-A6YQ-01 7 72717521 72717521 G A NSUN5 Silent p.S429S 0.14 TCGA-DX-A6YQ-01 7 86811368 86811368 A G DMTF1 Intron 0.39 TCGA-DX-A6YQ-01 7 93106949 93106949 C A CALCR Missense_Mutation p.W97C 0.24 deleterious(0) probably_damaging(1) TCGA-DX-A6YQ-01 7 97823854 97823854 C T LMTK2 Silent p.F1359F 0.43 TCGA-DX-A6YQ-01 8 105235954 105235954 G T RIMS2 Intron 0.35 TCGA-DX-A6YQ-01 8 11995398 11995398 A G USP17L2 Missense_Mutation p.L291P 0.28 tolerated(0.09) possibly_damaging(0.628) TCGA-DX-A6YQ-01 8 145541664 145541664 G C DGAT1 Silent p.L256L 0.27 TCGA-DX-A6YQ-01 8 2024315 2024315 G A MYOM2 Silent p.P405P 0.28 TCGA-DX-A6YQ-01 8 23702549 23702549 A T STC1 Missense_Mutation p.Y160N 0.56 deleterious(0) probably_damaging(0.99) TCGA-DX-A6YQ-01 8 56698829 56698829 A G TGS1 Missense_Mutation p.I124M 0.39 tolerated(0.87) benign(0.008) TCGA-DX-A6YQ-01 8 62438653 62438653 T C ASPH Missense_Mutation p.K595E 0.17 deleterious(0.03) benign(0.043) TCGA-DX-A6YQ-01 8 9635694 9635694 T C TNKS 3'UTR 0.29 TCGA-DX-A6YQ-01 9 101050539 101050539 C T GABBR2 3'UTR 0.38 TCGA-DX-A6YQ-01 9 136343454 136343454 T C SLC2A6 Silent p.T59T 0.29 TCGA-DX-A6YQ-01 9 21967585 21967585 T A C9orf53 3'UTR 0.62 TCGA-DX-A6YQ-01 9 21967591 21967592 - AC C9orf53 3'UTR 0.56 TCGA-DX-A6YQ-01 9 95796885 95796885 C T FGD3 Silent p.S616S 0.37 TCGA-DX-A6YQ-01 9 96870365 96870365 C T PTPDC1 3'UTR 0.46 TCGA-DX-A6YQ-01 9 98208029 98208029 C G PTCH1 3'UTR 0.17 TCGA-DX-A6YQ-01 X 101159271 101159271 G T ZMAT1 Missense_Mutation p.L52I 0.28 deleterious(0.04) benign(0.209) TCGA-DX-A6YQ-01 X 102613314 102613314 C - WBP5 3'UTR 0.29 TCGA-DX-A6YQ-01 X 103494923 103494923 A T ESX1 Missense_Mutation p.C403S 0.24 tolerated_low_confidence(0.53) unknown(0) TCGA-DX-A6YQ-01 X 110653472 110653472 G T DCX Missense_Mutation p.A133D 0.24 deleterious(0) probably_damaging(0.991) TCGA-DX-A6YQ-01 X 130408611 130408611 G C IGSF1 Nonsense_Mutation p.S1243* 0.12 TCGA-DX-A6YQ-01 X 130408685 130408685 G A IGSF1 Silent p.I1218I 0.10 TCGA-DX-A6YQ-01 X 130408707 130408707 G C IGSF1 Nonsense_Mutation p.S1211* 0.10 TCGA-DX-A6YQ-01 X 130408744 130408744 G C IGSF1 Missense_Mutation p.L1199V 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A6YQ-01 X 130409008 130409008 G T IGSF1 Nonsense_Mutation p.S1151* 0.19 TCGA-DX-A6YQ-01 X 135405422 135405422 C A GPR112 Missense_Mutation p.Q186K 0.20 deleterious(0) probably_damaging(0.995) TCGA-DX-A6YQ-01 X 153127593 153127593 C T L1CAM 3'UTR 0.21 TCGA-DX-A6YQ-01 X 153292331 153292331 G A MECP2 3'Flank 0.30 TCGA-DX-A6YQ-01 X 153692617 153692617 C T PLXNA3 Missense_Mutation p.P597S 0.22 deleterious(0) possibly_damaging(0.89) TCGA-DX-A6YQ-01 X 1743283 1743283 C T ASMT Silent p.D122D 0.80 TCGA-DX-A6YQ-01 X 67939184 67939184 G A STARD8 Silent p.L611L 0.65 TCGA-DX-A6YR-01 10 100242511 100242511 G T HPSE2 Missense_Mutation p.L499I 0.24 tolerated(0.18) benign(0.026) TCGA-DX-A6YR-01 10 100503735 100503735 C T HPSE2 Missense_Mutation p.R230H 0.29 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YR-01 10 119764855 119764855 T C RAB11FIP2 3'UTR 0.55 TCGA-DX-A6YR-01 10 61834026 61834026 G T ANK3 Missense_Mutation p.P2205T 0.24 benign(0.041) TCGA-DX-A6YR-01 10 73521633 73521633 C T C10orf54 Missense_Mutation p.G78D 0.43 tolerated(0.14) possibly_damaging(0.831) TCGA-DX-A6YR-01 10 79397225 79397225 G T KCNMA1 Missense_Mutation p.S59Y 0.24 tolerated_low_confidence(0.12) possibly_damaging(0.502) TCGA-DX-A6YR-01 10 79397243 79397243 G A KCNMA1 Missense_Mutation p.S53F 0.23 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-DX-A6YR-01 10 88717176 88717176 C T MMRN2 Nonsense_Mutation p.W41* 0.52 TCGA-DX-A6YR-01 11 105967630 105967630 C T AASDHPPT Missense_Mutation p.S309L 0.39 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-DX-A6YR-01 11 11454275 11454275 A T GALNT18 Missense_Mutation p.V163D 0.14 deleterious(0) probably_damaging(0.977) TCGA-DX-A6YR-01 11 123624785 123624785 C T OR6X1 Missense_Mutation p.V148M 0.09 tolerated(0.26) benign(0.091) TCGA-DX-A6YR-01 11 124543597 124543597 G A SIAE Missense_Mutation p.A3V 0.30 tolerated_low_confidence(0.1) benign(0.43) TCGA-DX-A6YR-01 11 17629924 17629924 G A OTOG Missense_Mutation p.R1425Q 0.10 benign(0.01) TCGA-DX-A6YR-01 11 17653668 17653668 C T OTOG Missense_Mutation p.R2335W 0.23 probably_damaging(0.994) TCGA-DX-A6YR-01 11 47372888 47372888 G A MYBPC3 Missense_Mutation p.T65M 0.14 tolerated_low_confidence(0.05) benign(0.097) TCGA-DX-A6YR-01 11 49207240 49207240 T G FOLH1 Silent p.T269T 0.29 TCGA-DX-A6YR-01 11 64532898 64532898 C T SF1 3'UTR 0.23 TCGA-DX-A6YR-01 11 75440005 75440005 T A MOGAT2 Missense_Mutation p.I274K 0.15 deleterious(0) benign(0.356) TCGA-DX-A6YR-01 11 85373020 85373020 A G CREBZF 3'UTR 0.09 TCGA-DX-A6YR-01 12 102142886 102142886 G A GNPTAB Missense_Mutation p.A1229V 0.08 deleterious(0.04) probably_damaging(0.999) TCGA-DX-A6YR-01 12 103981330 103981330 G T STAB2 Missense_Mutation p.G26W 0.17 deleterious(0.01) benign(0.315) TCGA-DX-A6YR-01 12 113906052 113906052 G T LHX5 Silent p.T185T 0.29 TCGA-DX-A6YR-01 12 123187043 123187043 G A HCAR2 Missense_Mutation p.T263M 0.18 tolerated(0.22) benign(0.046) TCGA-DX-A6YR-01 12 132681613 132681613 G A GALNT9 3'UTR 0.20 TCGA-DX-A6YR-01 12 26592165 26592165 C A ITPR2 Missense_Mutation p.V2180L 0.41 tolerated(0.26) benign(0.039) TCGA-DX-A6YR-01 12 52159701 52159701 C T SCN8A Nonsense_Mutation p.R931* 0.30 TCGA-DX-A6YR-01 12 53585695 53585695 C T ITGB7 Missense_Mutation p.R755H 0.20 deleterious(0.01) probably_damaging(0.995) TCGA-DX-A6YR-01 12 66359582 66359582 A - HMGA2 3'UTR 0.15 TCGA-DX-A6YR-01 13 114294576 114294576 C T TFDP1 Silent p.D409D 0.43 TCGA-DX-A6YR-01 14 106320480 106320480 C T IGHM Missense_Mutation p.V444I 0.31 tolerated(0.22) benign(0.107) TCGA-DX-A6YR-01 14 69995186 69995186 G A PLEKHD1 3'UTR 0.21 TCGA-DX-A6YR-01 14 73587919 73587919 A T RBM25 3'UTR 0.06 TCGA-DX-A6YR-01 14 74823735 74823735 C A VRTN Silent p.G83G 0.33 TCGA-DX-A6YR-01 14 88946616 88946616 C T PTPN21 Missense_Mutation p.G387S 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A6YR-01 15 32460274 32460274 C T CHRNA7 Missense_Mutation p.A404V 0.17 tolerated(0.3) benign(0.002) TCGA-DX-A6YR-01 15 49283780 49283780 G A SECISBP2L 3'UTR 0.17 TCGA-DX-A6YR-01 16 31393832 31393832 C T ITGAX 3'UTR 0.29 TCGA-DX-A6YR-01 16 3139921 3139921 C T ZSCAN10 Missense_Mutation p.R450Q 0.27 tolerated(1) benign(0.001) TCGA-DX-A6YR-01 16 78064763 78064763 G T CLEC3A 3'UTR 0.38 TCGA-DX-A6YR-01 16 84270517 84270517 C T KCNG4 Missense_Mutation p.R192H 0.41 tolerated(0.12) benign(0.001) TCGA-DX-A6YR-01 17 16706243 16706243 G A CCDC144A 3'UTR 0.17 TCGA-DX-A6YR-01 17 48562112 48562112 C T RSAD1 Missense_Mutation p.R407W 0.33 deleterious(0) probably_damaging(1) TCGA-DX-A6YR-01 18 47431168 47431168 C T MYO5B Silent p.A815A 0.21 TCGA-DX-A6YR-01 19 14288464 14288464 C T LPHN1 Missense_Mutation p.V55I 0.16 deleterious(0.04) possibly_damaging(0.458) TCGA-DX-A6YR-01 19 15234361 15234361 G A ILVBL Silent p.G54G 0.23 TCGA-DX-A6YR-01 19 16437824 16437824 C T KLF2 Silent p.H350H 0.18 TCGA-DX-A6YR-01 19 34838875 34838875 A T KIAA0355 Missense_Mutation p.N872I 0.24 deleterious_low_confidence(0.05) benign(0.264) TCGA-DX-A6YR-01 19 37119402 37119402 G T ZNF382 3'UTR 0.11 TCGA-DX-A6YR-01 19 3778349 3778349 G A MATK Silent p.P453P 0.86 TCGA-DX-A6YR-01 19 4960773 4960773 G A UHRF1 RNA 0.22 TCGA-DX-A6YR-01 19 50986286 50986286 G A EMC10 3'UTR 0.25 TCGA-DX-A6YR-01 19 51201120 51201120 C T SHANK1 Missense_Mutation p.R614H 0.24 benign(0.277) TCGA-DX-A6YR-01 19 51330315 51330315 C T KLK15 Silent p.A100A 0.23 TCGA-DX-A6YR-01 19 51844468 51844468 C T VSIG10L Silent p.T278T 0.17 TCGA-DX-A6YR-01 19 53668216 53668216 A G ZNF665 Silent p.T509T 0.21 TCGA-DX-A6YR-01 19 55048149 55048149 A C KIR3DX1 Missense_Mutation p.K239T 0.23 tolerated(0.05) benign(0.058) TCGA-DX-A6YR-01 19 55363537 55363537 G A KIR3DL2 Missense_Mutation p.R52H 0.39 tolerated(0.91) benign(0.002) TCGA-DX-A6YR-01 19 603785 603785 G A HCN2 Missense_Mutation p.V292M 0.16 tolerated(0.09) benign(0.219) TCGA-DX-A6YR-01 1 147380140 147380140 G A GJA8 Missense_Mutation p.V20I 0.67 deleterious(0.01) possibly_damaging(0.643) TCGA-DX-A6YR-01 1 160786540 160786540 C A LY9 Nonsense_Mutation p.S410* 0.21 TCGA-DX-A6YR-01 1 192153717 192153717 C A RGS18 3'UTR 0.31 TCGA-DX-A6YR-01 1 19595795 19595795 C G AKR7L Intron 0.79 TCGA-DX-A6YR-01 1 42925276 42925276 A G PPCS Missense_Mutation p.I205M 0.60 deleterious(0) probably_damaging(0.985) TCGA-DX-A6YR-01 1 55151962 55151962 T G MROH7 Missense_Mutation p.V851G 0.62 tolerated(0.16) probably_damaging(0.994) TCGA-DX-A6YR-01 20 31196330 31196330 A G RP11-410N8.4 Silent p.T83T 0.18 TCGA-DX-A6YR-01 20 42635240 42635240 A T TOX2 Silent p.T73T 0.37 TCGA-DX-A6YR-01 20 43927061 43927061 C T MATN4 Missense_Mutation p.R392H 0.27 probably_damaging(0.999) TCGA-DX-A6YR-01 21 14410709 14410709 C T ANKRD30BP2 5'Flank 0.16 TCGA-DX-A6YR-01 21 31588020 31588020 G A CLDN8 Missense_Mutation p.P75L 0.50 deleterious(0.04) probably_damaging(0.915) TCGA-DX-A6YR-01 21 38390384 38390384 A G RIPPLY3 Silent p.G150G 0.17 TCGA-DX-A6YR-01 21 46067348 46067348 T C KRTAP10-11 3'UTR 0.64 TCGA-DX-A6YR-01 22 20721866 20721866 T C USP41 Missense_Mutation p.N232S 0.14 tolerated(0.29) benign(0.036) TCGA-DX-A6YR-01 22 23438030 23438030 G A GNAZ Missense_Mutation p.V50I 0.05 tolerated(0.22) probably_damaging(0.96) TCGA-DX-A6YR-01 22 26247469 26247469 C T MYO18B Missense_Mutation p.R1270C 0.29 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YR-01 22 26688611 26688611 G A SEZ6L Missense_Mutation p.A112T 0.12 tolerated_low_confidence(1) benign(0.002) TCGA-DX-A6YR-01 2 170062573 170062573 C T LRP2 Missense_Mutation p.V2506I 0.88 benign(0.035) TCGA-DX-A6YR-01 2 182403828 182403828 A G CERKL Missense_Mutation p.V536A 0.74 deleterious(0) probably_damaging(0.915) TCGA-DX-A6YR-01 2 241622006 241622006 G A AQP12B Silent p.H83H 0.21 TCGA-DX-A6YR-01 2 25016757 25016757 C T CENPO 5'UTR 0.17 TCGA-DX-A6YR-01 3 119462955 119462955 G A MAATS1 Missense_Mutation p.R605H 0.35 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YR-01 3 19575824 19575824 T C KCNH8 3'UTR 0.53 TCGA-DX-A6YR-01 3 22424366 22424366 G T HMGB1P5 RNA 0.15 TCGA-DX-A6YR-01 4 184431445 184431445 G A ING2 Silent p.K61K 0.53 TCGA-DX-A6YR-01 4 187539627 187539627 C A FAT1 Nonsense_Mutation p.E2705* 0.77 TCGA-DX-A6YR-01 4 36212335 36212335 G A ARAP2 Silent p.S388S 0.46 TCGA-DX-A6YR-01 4 36295187 36295187 T G DTHD1 Missense_Mutation p.F295V 0.19 tolerated(0.05) probably_damaging(0.999) TCGA-DX-A6YR-01 4 40817389 40817389 C T APBB2 3'UTR 0.38 TCGA-DX-A6YR-01 5 121187750 121187750 G A FTMT Missense_Mutation p.R31H 0.26 tolerated_low_confidence(0.09) benign(0.374) TCGA-DX-A6YR-01 5 139189009 139189009 C T PSD2 5'UTR 0.25 TCGA-DX-A6YR-01 5 140208762 140208762 C T PCDHA6 Silent p.D362D 0.21 TCGA-DX-A6YR-01 5 177642390 177642390 G C PHYKPL Silent p.V323V 0.19 TCGA-DX-A6YR-01 5 180582017 180582017 C A OR2V2 Missense_Mutation p.D25E 0.27 tolerated(0.33) possibly_damaging(0.816) TCGA-DX-A6YR-01 5 22142560 22142560 C T CDH12 Intron 0.16 TCGA-DX-A6YR-01 5 82940427 82940427 G A HAPLN1 Missense_Mutation p.A177V 0.28 deleterious(0) probably_damaging(1) TCGA-DX-A6YR-01 6 16303807 16303807 G A ATXN1 3'UTR 0.21 TCGA-DX-A6YR-01 6 51747956 51747956 C T PKHD1 Missense_Mutation p.V2429I 0.17 tolerated(1) benign(0) TCGA-DX-A6YR-01 7 100212899 100212899 C T MOSPD3 3'UTR 0.57 TCGA-DX-A6YR-01 7 100608877 100608877 C T MUC3A Silent p.S752S 0.12 TCGA-DX-A6YR-01 7 142627168 142627168 A G TRPV5 Missense_Mutation p.C112R 0.31 tolerated(0.05) benign(0.022) TCGA-DX-A6YR-01 7 149462898 149462898 C A ZNF467 Silent p.L231L 0.19 TCGA-DX-A6YR-01 7 149480380 149480380 C T SSPO RNA 0.13 TCGA-DX-A6YR-01 7 150642533 150642533 G A KCNH2 Nonsense_Mutation p.R1134* 0.52 TCGA-DX-A6YR-01 7 158476026 158476026 G A NCAPG2 Missense_Mutation p.P297L 0.22 tolerated(0.32) benign(0.081) TCGA-DX-A6YR-01 7 36552674 36552674 G A AOAH 3'UTR 0.16 TCGA-DX-A6YR-01 7 45005706 45005706 C T MYO1G Missense_Mutation p.R708H 0.40 tolerated(0.07) benign(0.003) TCGA-DX-A6YR-01 7 72951686 72951686 G A BCL7B Missense_Mutation p.P184L 0.29 deleterious(0.02) benign(0.098) TCGA-DX-A6YR-01 8 104892848 104892848 G T RIMS2 Intron 0.18 TCGA-DX-A6YR-01 8 139606332 139606332 C T COL22A1 Missense_Mutation p.G1515S 0.30 unknown(0) TCGA-DX-A6YR-01 8 57075225 57075225 A T PLAG1 3'UTR 0.29 TCGA-DX-A6YR-01 9 104332630 104332630 G A GRIN3A 3'UTR 0.70 TCGA-DX-A6YR-01 9 116359104 116359104 G A RGS3 Silent p.T1156T 0.17 TCGA-DX-A6YR-01 9 91150536 91150536 G A NXNL2 Missense_Mutation p.A63T 0.36 tolerated(0.08) probably_damaging(0.956) TCGA-DX-A6YR-01 X 108708524 108708524 G T GUCY2F Silent p.T293T 0.38 TCGA-DX-A6YR-01 X 140996581 140996581 A G MAGEC1 Missense_Mutation p.S1131G 0.85 deleterious_low_confidence(0.04) unknown(0) TCGA-DX-A6YR-01 X 150345294 150345294 C T GPR50 Missense_Mutation p.A34V 0.36 tolerated(0.41) benign(0.003) TCGA-DX-A6YR-01 X 153288452 153288452 G T IRAK1 5'Flank 0.53 TCGA-DX-A6YR-01 X 70147136 70147136 G A SLC7A3 Missense_Mutation p.L428F 0.50 deleterious(0) possibly_damaging(0.628) TCGA-DX-A6YS-01 10 101605461 101605461 T A ABCC2 Silent p.G1356G 0.27 TCGA-DX-A6YS-01 10 32582016 32582016 G C EPC1 Missense_Mutation p.S189C 0.12 tolerated(0.07) benign(0.002) TCGA-DX-A6YS-01 10 98824586 98824586 C T SLIT1 Missense_Mutation p.R178H 0.28 deleterious(0) probably_damaging(1) TCGA-DX-A6YS-01 11 113660839 113660839 C A ATF4P4 RNA 0.12 TCGA-DX-A6YS-01 11 57958035 57958035 G A OR9Q2 Missense_Mutation p.V25I 0.23 tolerated(0.66) benign(0.001) TCGA-DX-A6YS-01 11 65793682 65793682 A T CATSPER1 Missense_Mutation p.S57T 0.29 tolerated(0.1) benign(0.262) TCGA-DX-A6YS-01 11 67933295 67933295 G A SUV420H1 Intron 0.41 TCGA-DX-A6YS-01 11 73988030 73988030 C T P4HA3 Silent p.T445T 0.20 TCGA-DX-A6YS-01 11 94609431 94609431 C T AMOTL1 3'UTR 0.14 TCGA-DX-A6YS-01 12 112654972 112654972 G T HECTD4 Silent p.R2222R 0.21 TCGA-DX-A6YS-01 12 15661537 15661537 G A PTPRO Missense_Mutation p.E434K 0.16 tolerated_low_confidence(0.08) possibly_damaging(0.889) TCGA-DX-A6YS-01 12 4719424 4719424 C T DYRK4 Silent p.F373F 0.25 TCGA-DX-A6YS-01 12 53686366 53686366 G T ESPL1 Missense_Mutation p.G1974V 0.20 deleterious(0) probably_damaging(0.995) TCGA-DX-A6YS-01 13 46355193 46355193 G T SIAH3 3'UTR 0.21 TCGA-DX-A6YS-01 14 23855737 23855737 G A MYH6 Silent p.D1582D 0.24 TCGA-DX-A6YS-01 14 71216792 71216792 C T MAP3K9 Silent p.G336G 0.34 TCGA-DX-A6YS-01 14 74206172 74206193 TCGCACATAGCGGTCCAGCTGT G ELMSAN1 In_Frame_Del p.Q174_R180del 0.16 TCGA-DX-A6YS-01 14 74206200 74206200 C A ELMSAN1 Missense_Mutation p.G171V 0.15 deleterious_low_confidence(0.02) benign(0.227) TCGA-DX-A6YS-01 15 43990308 43990308 C T CKMT1A Missense_Mutation p.R325W 0.09 deleterious(0.01) possibly_damaging(0.746) TCGA-DX-A6YS-01 15 76523715 76523715 A C ETFA Missense_Mutation p.S281A 0.09 deleterious(0) possibly_damaging(0.537) TCGA-DX-A6YS-01 15 81166227 81166227 G T KIAA1199 Missense_Mutation p.A3S 0.19 deleterious_low_confidence(0.03) benign(0.033) TCGA-DX-A6YS-01 16 1254426 1254426 A T CACNA1H Missense_Mutation p.T807S 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-DX-A6YS-01 16 1402144 1402144 G A GNPTG Missense_Mutation p.E32K 0.70 deleterious(0) probably_damaging(0.968) TCGA-DX-A6YS-01 16 23382671 23382671 C T SCNN1B Missense_Mutation p.A311V 0.25 tolerated(1) benign(0.228) TCGA-DX-A6YS-01 16 2757702 2757702 C G KCTD5 3'UTR 0.24 TCGA-DX-A6YS-01 16 2854504 2854504 T A PRSS41 RNA 0.26 TCGA-DX-A6YS-01 16 31004436 31004436 G T STX1B Intron 0.20 TCGA-DX-A6YS-01 16 3705481 3705481 C T DNASE1 Missense_Mutation p.T36I 0.20 deleterious(0) possibly_damaging(0.582) TCGA-DX-A6YS-01 16 85952224 85952224 G A IRF8 Missense_Mutation p.R268Q 0.23 tolerated(0.14) benign(0.036) TCGA-DX-A6YS-01 16 90162614 90162614 G T TUBB8P7 RNA 0.64 TCGA-DX-A6YS-01 17 16525674 16525674 T C ZNF624 Silent p.G842G 0.30 TCGA-DX-A6YS-01 17 29205036 29205036 G C ATAD5 Missense_Mutation p.D1312H 0.48 deleterious(0) probably_damaging(0.97) TCGA-DX-A6YS-01 17 33768149 33768149 G T SLFN13 Missense_Mutation p.A720E 0.30 tolerated(0.51) benign(0.015) TCGA-DX-A6YS-01 17 3844794 3844794 C T ATP2A3 Missense_Mutation p.R567Q 0.24 tolerated(0.52) benign(0.01) TCGA-DX-A6YS-01 17 41020928 41020928 G T AOC4P Intron 0.23 TCGA-DX-A6YS-01 17 55927328 55927328 C T MRPS23 Missense_Mutation p.R15Q 0.36 deleterious(0.03) possibly_damaging(0.577) TCGA-DX-A6YS-01 17 64683296 64683296 A G PRKCA Silent p.K199K 0.21 TCGA-DX-A6YS-01 17 656348 656348 A G GEMIN4 5'Flank 0.26 TCGA-DX-A6YS-01 17 7330278 7330278 G A C17orf74 Missense_Mutation p.R323H 0.27 deleterious(0.03) benign(0.154) TCGA-DX-A6YS-01 17 7613799 7613799 G A EFNB3 3'UTR 0.64 TCGA-DX-A6YS-01 17 80044426 80044426 G T FASN Missense_Mutation p.Q1146K 0.27 tolerated(0.3) benign(0.001) TCGA-DX-A6YS-01 19 35940871 35940871 G A FFAR2 Silent p.T85T 0.27 TCGA-DX-A6YS-01 19 3985430 3985447 CGCCGAGGATGGCGGCGA - EEF2 5'UTR 0.18 TCGA-DX-A6YS-01 19 39963465 39963465 T G SUPT5H Missense_Mutation p.F684C 0.20 tolerated(0.18) benign(0.174) TCGA-DX-A6YS-01 19 42852602 42852602 G A MEGF8 Intron 0.19 TCGA-DX-A6YS-01 19 50962247 50962247 T C MYBPC2 Missense_Mutation p.L860P 0.30 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YS-01 19 55147308 55147308 C A AC009892.10 3'UTR 0.27 TCGA-DX-A6YS-01 1 11766686 11766686 A G DRAXIN Missense_Mutation p.N124S 0.18 tolerated(0.13) benign(0.009) TCGA-DX-A6YS-01 1 145555693 145555693 T G ANKRD35 Missense_Mutation p.V14G 0.85 deleterious(0) benign(0.307) TCGA-DX-A6YS-01 1 152785026 152785026 C A LCE1B Missense_Mutation p.P35H 0.16 deleterious_low_confidence(0.05) unknown(0) TCGA-DX-A6YS-01 1 186034411 186034411 C T HMCN1 Missense_Mutation p.P2519S 0.08 benign(0.227) TCGA-DX-A6YS-01 1 240371195 240371195 C T FMN2 Missense_Mutation p.A1028V 0.33 unknown(0) TCGA-DX-A6YS-01 1 63790632 63790632 G T FOXD3 3'UTR 0.39 TCGA-DX-A6YS-01 20 1285944 1285944 G T SNPH Missense_Mutation p.G244V 0.19 deleterious(0) probably_damaging(0.995) TCGA-DX-A6YS-01 20 44644992 44644992 G C MMP9 Missense_Mutation p.Q703H 0.20 tolerated(0.23) benign(0.003) TCGA-DX-A6YS-01 22 38626697 38626697 C A TMEM184B Missense_Mutation p.G168V 0.42 tolerated(0.08) possibly_damaging(0.542) TCGA-DX-A6YS-01 22 43619125 43619125 C T SCUBE1 Silent p.P435P 0.42 TCGA-DX-A6YS-01 22 49146376 49146376 C T FAM19A5 3'UTR 0.59 TCGA-DX-A6YS-01 22 50596637 50596637 T C MOV10L1 Splice_Site p.X1072_splice 0.40 TCGA-DX-A6YS-01 22 50962083 50962086 CTGT - SCO2 Frame_Shift_Del p.D252Vfs*24 0.45 TCGA-DX-A6YS-01 2 133429713 133429713 T A NCKAP5 3'UTR 0.29 TCGA-DX-A6YS-01 2 1915828 1915828 C T MYT1L Missense_Mutation p.R556H 0.50 deleterious(0) probably_damaging(0.988) TCGA-DX-A6YS-01 2 21256232 21256232 G T APOB Missense_Mutation p.L355M 0.18 benign(0.377) TCGA-DX-A6YS-01 2 234436116 234436116 G T USP40 Missense_Mutation p.S565R 0.29 tolerated(0.08) benign(0.128) TCGA-DX-A6YS-01 2 25967185 25967185 G T ASXL2 Missense_Mutation p.A674D 0.22 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YS-01 2 74734720 74734720 C T PCGF1 Missense_Mutation p.D26N 0.54 tolerated_low_confidence(0.1) benign(0.104) TCGA-DX-A6YS-01 3 154884812 154884812 T C MME Splice_Site p.X594_splice 0.22 TCGA-DX-A6YS-01 3 185361830 185361830 G A IGF2BP2 3'UTR 0.09 TCGA-DX-A6YS-01 3 186760924 186760924 C T ST6GAL1 Missense_Mutation p.R145W 0.58 probably_damaging(0.987) TCGA-DX-A6YS-01 3 30029664 30029664 A T RBMS3 Missense_Mutation p.T377S 0.24 tolerated(0.1) benign(0.129) TCGA-DX-A6YS-01 3 44684100 44684100 A T ZNF197 Missense_Mutation p.Q493L 0.60 tolerated(0.35) possibly_damaging(0.706) TCGA-DX-A6YS-01 3 47039626 47039626 G A NBEAL2 Missense_Mutation p.E1010K 0.62 deleterious(0.01) benign(0.184) TCGA-DX-A6YS-01 3 47040210 47040210 G T NBEAL2 Silent p.P1075P 0.70 TCGA-DX-A6YS-01 3 62388806 62388806 C T CADPS Missense_Mutation p.D1278N 0.11 tolerated(0.11) possibly_damaging(0.539) TCGA-DX-A6YS-01 4 24810014 24810014 G T CCDC149 Silent p.T529T 0.18 TCGA-DX-A6YS-01 4 56458334 56458334 G A PDCL2 5'UTR 0.10 TCGA-DX-A6YS-01 4 77247038 77247038 T A CCDC158 Missense_Mutation p.K1043N 0.67 tolerated(0.16) probably_damaging(0.99) TCGA-DX-A6YS-01 5 140250373 140250373 C T PCDHA11 Missense_Mutation p.P562L 0.27 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-DX-A6YS-01 5 140391541 140391541 T A PCDHAC1 3'UTR 0.31 TCGA-DX-A6YS-01 5 140573134 140573134 G T PCDHB10 Missense_Mutation p.V337L 0.33 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-DX-A6YS-01 5 146773512 146773512 C T DPYSL3 3'UTR 0.21 TCGA-DX-A6YS-01 5 156593092 156593092 G A FAM71B Nonsense_Mutation p.R30* 0.22 TCGA-DX-A6YS-01 6 27792181 27792181 C A HIST1H4J Silent p.R93R 0.08 TCGA-DX-A6YS-01 6 28493798 28493798 C - GPX5 Frame_Shift_Del p.T3Nfs*3 0.22 TCGA-DX-A6YS-01 6 33554590 33554590 C T GGNBP1 Intron 0.41 TCGA-DX-A6YS-01 6 4128014 4128014 T C ECI2 Missense_Mutation p.I185V 0.15 tolerated(1) benign(0) TCGA-DX-A6YS-01 6 43160893 43160893 G T CUL9 Missense_Mutation p.V779F 0.32 tolerated(0.71) benign(0.157) TCGA-DX-A6YS-01 6 43251004 43251004 C T TTBK1 Silent p.G842G 0.26 TCGA-DX-A6YS-01 6 66205331 66205331 T C EYS 5'UTR 0.54 TCGA-DX-A6YS-01 7 102918083 102918083 C T DPY19L2P2 Intron 0.07 TCGA-DX-A6YS-01 7 142032085 142032085 C A TRBV7-1 Missense_Mutation p.A16E 0.10 tolerated(0.06) benign(0.209) TCGA-DX-A6YS-01 7 21659667 21659667 C A DNAH11 Missense_Mutation p.Q1496K 0.10 benign(0.096) TCGA-DX-A6YS-01 7 31377818 31377818 C G NEUROD6 3'UTR 0.04 TCGA-DX-A6YS-01 7 38534093 38534093 C T AMPH Silent p.S80S 0.08 TCGA-DX-A6YS-01 7 39472725 39472725 C G POU6F2 Missense_Mutation p.A359G 0.11 tolerated(0.14) unknown(0) TCGA-DX-A6YS-01 7 5752469 5752469 C T RNF216 Missense_Mutation p.S620N 0.54 tolerated(0.21) benign(0.166) TCGA-DX-A6YS-01 7 6026826 6026826 G A PMS2 Missense_Mutation p.P524S 0.28 tolerated(0.16) benign(0.024) TCGA-DX-A6YS-01 7 6661638 6661638 G A ZNF853 Missense_Mutation p.R339Q 0.38 deleterious_low_confidence(0) unknown(0) TCGA-DX-A6YS-01 7 72413750 72413750 T G POM121 Missense_Mutation p.F808C 0.42 deleterious(0) possibly_damaging(0.823) TCGA-DX-A6YS-01 7 82595594 82595594 T A PCLO Missense_Mutation p.K1170N 0.07 unknown(0) TCGA-DX-A6YS-01 7 98460949 98460949 C A TMEM130 Missense_Mutation p.V54L 0.17 tolerated(0.34) benign(0.297) TCGA-DX-A6YS-01 8 133182625 133182625 C T KCNQ3 Silent p.A397A 0.19 TCGA-DX-A6YS-01 8 146278790 146278790 G T C8orf33 Nonsense_Mutation p.E171* 0.29 TCGA-DX-A6YS-01 8 38034440 38034440 G A BAG4 Missense_Mutation p.G18D 0.13 deleterious_low_confidence(0) unknown(0) TCGA-DX-A6YS-01 8 4494863 4494863 C A CSMD1 Splice_Site p.X101_splice 0.16 TCGA-DX-A6YS-01 8 74737474 74737474 C G UBE2W Missense_Mutation p.D80H 0.26 tolerated(0.18) benign(0.005) TCGA-DX-A6YS-01 9 116226102 116226102 G T RGS3 Intron 0.19 TCGA-DX-A6YS-01 9 125681875 125681875 G T ZBTB26 Missense_Mutation p.S113R 0.20 tolerated(0.08) probably_damaging(0.917) TCGA-DX-A6YS-01 9 66457342 66457342 G A RP11-262H14.1 RNA 0.08 TCGA-DX-A6YS-01 9 916825 916825 G A DMRT1 Silent p.P295P 0.33 TCGA-DX-A6YS-01 X 13338066 13338066 C T ATXN3L 5'UTR 0.20 TCGA-DX-A6YS-01 X 153049221 153049221 G A SRPK3 Silent p.L263L 0.55 TCGA-DX-A6YS-01 X 153134321 153134321 C T L1CAM Missense_Mutation p.G452R 0.12 deleterious(0) probably_damaging(1) TCGA-DX-A6YS-01 X 153289325 153289325 G A IRAK1 5'Flank 1.00 TCGA-DX-A6YS-01 X 18659939 18659939 G - RS1 3'UTR 0.24 TCGA-DX-A6YS-01 X 23801352 23801352 A T SAT1 5'UTR 0.58 TCGA-DX-A6YT-01 11 18472585 18472585 G T LDHC Missense_Mutation p.V304L 0.81 tolerated(0.09) probably_damaging(0.993) TCGA-DX-A6YT-01 11 27393217 27393217 G T LGR4 Missense_Mutation p.S508R 0.27 tolerated(0.52) benign(0.002) TCGA-DX-A6YT-01 12 111348887 111348887 C T MYL2 Silent p.K165K 0.52 TCGA-DX-A6YT-01 13 114784285 114784285 T C RASA3 Missense_Mutation p.Y299C 0.75 tolerated(0.17) possibly_damaging(0.503) TCGA-DX-A6YT-01 13 24200872 24200872 G T TNFRSF19 Missense_Mutation p.G129V 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-DX-A6YT-01 14 31792992 31792992 C G HEATR5A Missense_Mutation p.C1189S 0.61 tolerated(0.75) benign(0) TCGA-DX-A6YT-01 14 72976950 72976950 C T RGS6 Nonsense_Mutation p.R352* 0.53 TCGA-DX-A6YT-01 16 19127126 19127126 G T ITPRIPL2 Missense_Mutation p.R448L 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-DX-A6YT-01 17 16843092 16843092 G A TNFRSF13B Silent p.G217G 0.09 TCGA-DX-A6YT-01 17 34185951 34185951 T C C17orf66 Missense_Mutation p.M294V 0.38 tolerated(0.44) benign(0.001) TCGA-DX-A6YT-01 17 6979152 6979152 G T CLEC10A Missense_Mutation p.S191R 0.22 deleterious(0.02) benign(0.157) TCGA-DX-A6YT-01 17 7220782 7220782 G A NEURL4 Missense_Mutation p.A1439V 0.47 tolerated(0.46) benign(0.096) TCGA-DX-A6YT-01 17 7222513 7222513 G A NEURL4 Silent p.F1180F 0.33 TCGA-DX-A6YT-01 17 7536268 7536268 G A SHBG Missense_Mutation p.A351T 0.61 tolerated(0.1) benign(0.043) TCGA-DX-A6YT-01 17 7536587 7536587 G C SHBG Missense_Mutation p.D376H 0.83 deleterious(0) probably_damaging(1) TCGA-DX-A6YT-01 17 7536683 7536683 G C SHBG 3'UTR 0.92 TCGA-DX-A6YT-01 18 28909913 28909913 G T DSG1 Missense_Mutation p.R144I 0.21 deleterious(0) possibly_damaging(0.849) TCGA-DX-A6YT-01 19 13879645 13879645 C T MRI1 Silent p.V244V 0.33 TCGA-DX-A6YT-01 19 36594453 36594453 C T WDR62 Silent p.I1241I 0.41 TCGA-DX-A6YT-01 1 152883138 152883138 C G IVL Missense_Mutation p.Q289E 0.37 tolerated(0.38) probably_damaging(0.926) TCGA-DX-A6YT-01 1 158653165 158653165 G A SPTA1 Missense_Mutation p.T129M 0.54 deleterious(0.03) probably_damaging(0.988) TCGA-DX-A6YT-01 1 160011711 160011711 G A KCNJ10 Silent p.R204R 0.18 TCGA-DX-A6YT-01 1 165651427 165651427 G A ALDH9A1 Missense_Mutation p.P170L 0.27 deleterious(0) probably_damaging(0.991) TCGA-DX-A6YT-01 1 16952433 16952433 G A CROCCP2 3'Flank 0.38 TCGA-DX-A6YT-01 1 206772927 206772927 G A EIF2D Silent p.S364S 0.50 TCGA-DX-A6YT-01 1 233490673 233490673 G T MLK4 Missense_Mutation p.M409I 0.23 deleterious(0.02) benign(0.132) TCGA-DX-A6YT-01 1 26797345 26797345 G T DHDDS 3'UTR 0.33 TCGA-DX-A6YT-01 1 33134718 33134718 A T RBBP4 Missense_Mutation p.D249V 0.88 deleterious(0) possibly_damaging(0.827) TCGA-DX-A6YT-01 1 47400759 47400759 C A CYP4A11 Missense_Mutation p.A235S 0.11 tolerated(0.1) benign(0.043) TCGA-DX-A6YT-01 20 18296730 18296730 G T ZNF133 Missense_Mutation p.C411F 0.23 deleterious(0.01) probably_damaging(1) TCGA-DX-A6YT-01 20 3631107 3631107 G T ATRN 3'UTR 0.22 TCGA-DX-A6YT-01 21 45999986 45999986 C A KRTAP10-5 Missense_Mutation p.S157I 0.08 deleterious(0.04) unknown(0) TCGA-DX-A6YT-01 21 46011728 46011728 C A KRTAP10-6 Missense_Mutation p.S213I 0.08 deleterious(0.05) unknown(0) TCGA-DX-A6YT-01 22 32353004 32353006 GGA - YWHAH 3'UTR 0.44 TCGA-DX-A6YT-01 2 102968171 102968171 G T IL1RL1 Missense_Mutation p.E487D 0.24 tolerated(0.42) benign(0.038) TCGA-DX-A6YT-01 2 179398147 179398147 C T TTN Missense_Mutation p.D34399N 0.50 TCGA-DX-A6YT-01 2 210769571 210769571 G T UNC80 Missense_Mutation p.S1489I 0.25 possibly_damaging(0.905) TCGA-DX-A6YT-01 2 211525236 211525236 C T CPS1 Nonsense_Mutation p.R1268* 0.42 TCGA-DX-A6YT-01 2 219694844 219694844 G T PRKAG3 Missense_Mutation p.Q164K 0.22 tolerated(0.36) benign(0.001) TCGA-DX-A6YT-01 2 233446870 233446870 G T AC073254.1 Intron 0.27 TCGA-DX-A6YT-01 2 27263264 27263264 G T TMEM214 Nonsense_Mutation p.E615* 0.21 TCGA-DX-A6YT-01 3 138724919 138724919 G A PRR23A Silent p.A64A 0.33 TCGA-DX-A6YT-01 3 47888097 47888097 G T DHX30 Missense_Mutation p.R512L 0.38 tolerated(0.07) possibly_damaging(0.818) TCGA-DX-A6YT-01 4 111553619 111553619 C T PITX2 Missense_Mutation p.V22I 0.21 tolerated_low_confidence(0.18) benign(0.001) TCGA-DX-A6YT-01 4 164775282 164775282 A T MARCH1 Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-DX-A6YT-01 5 112177010 112177010 G T APC Missense_Mutation p.A1907S 0.25 benign(0.001) TCGA-DX-A6YT-01 6 32782124 32782124 G A HLA-DOB Silent p.L206L 0.64 TCGA-DX-A6YT-01 7 121653649 121653649 G T PTPRZ1 Missense_Mutation p.D1517Y 0.21 tolerated_low_confidence(0.06) benign(0.006) TCGA-DX-A6YT-01 7 142020940 142020940 C A TRBV5-1 Missense_Mutation p.A16E 0.52 deleterious(0.01) benign(0.299) TCGA-DX-A6YT-01 7 149990493 149990493 C A ACTR3C Missense_Mutation p.A21S 0.08 tolerated(0.27) benign(0.291) TCGA-DX-A6YT-01 7 27934918 27934918 G T JAZF1 Silent p.R102R 0.33 TCGA-DX-A6YT-01 7 28449613 28449613 G T CREB5 5'Flank 0.21 TCGA-DX-A6YT-01 7 99306799 99306799 A T CYP3A7 Missense_Mutation p.M371K 0.48 tolerated(0.09) benign(0.015) TCGA-DX-A6YT-01 8 132988312 132988312 G C EFR3A Missense_Mutation p.E400Q 0.81 deleterious(0.03) possibly_damaging(0.84) TCGA-DX-A6YT-01 8 17421156 17421156 C T SLC7A2 Silent p.N612N 0.09 TCGA-DX-A6YT-01 8 55059946 55059946 T C MRPL15 Silent p.I186I 0.73 TCGA-DX-A6YT-01 9 79267561 79267561 G C PRUNE2 Missense_Mutation p.R2799G 0.28 deleterious(0) possibly_damaging(0.787) TCGA-DX-A6YT-01 X 40464843 40464843 T C ATP6AP2 Missense_Mutation p.Y297H 0.26 tolerated(0.49) benign(0.246) TCGA-DX-A6YU-01 11 103907598 103907598 C A PDGFD Intron 0.39 TCGA-DX-A6YU-01 11 18195201 18195201 G A MRGPRX4 Missense_Mutation p.R133H 0.50 tolerated(0.76) benign(0.01) TCGA-DX-A6YU-01 11 24750765 24750765 G A LUZP2 Missense_Mutation p.R38Q 0.29 deleterious(0) probably_damaging(0.986) TCGA-DX-A6YU-01 11 93913360 93913360 G A PANX1 Missense_Mutation p.G380S 0.26 tolerated(0.19) benign(0.208) TCGA-DX-A6YU-01 12 109277522 109277522 G A DAO Intron 0.28 TCGA-DX-A6YU-01 12 48437007 48437007 T C SENP1 3'UTR 0.18 TCGA-DX-A6YU-01 12 70748365 70748365 G A CNOT2 3'UTR 0.18 TCGA-DX-A6YU-01 13 46135548 46135548 T A FAM194B Nonsense_Mutation p.K455* 0.21 TCGA-DX-A6YU-01 13 79233299 79233299 A C RNF219 5'UTR 0.20 TCGA-DX-A6YU-01 14 101350508 101350508 G A RTL1 Silent p.F206F 0.62 TCGA-DX-A6YU-01 14 21542353 21542353 A G ARHGEF40 Missense_Mutation p.K155R 0.21 tolerated(0.56) probably_damaging(0.952) TCGA-DX-A6YU-01 15 91421487 91421489 GGG - FURIN In_Frame_Del p.G265del 0.26 TCGA-DX-A6YU-01 17 28525465 28525465 G C SLC6A4 3'UTR 0.64 TCGA-DX-A6YU-01 17 72838591 72838591 G A GRIN2C Silent p.L1229L 0.41 TCGA-DX-A6YU-01 18 21441699 21441699 G A LAMA3 Silent p.A1504A 0.24 TCGA-DX-A6YU-01 18 72238471 72238471 T C CNDP1 Silent p.L269L 0.30 TCGA-DX-A6YU-01 19 19654128 19654128 G A CILP2 Missense_Mutation p.R350H 0.28 tolerated(0.21) benign(0.004) TCGA-DX-A6YU-01 19 22156134 22156134 G T ZNF208 Missense_Mutation p.L568I 0.19 deleterious(0.02) probably_damaging(0.969) TCGA-DX-A6YU-01 19 2790520 2790520 C T THOP1 Missense_Mutation p.L40F 0.13 deleterious(0.03) probably_damaging(0.969) TCGA-DX-A6YU-01 19 36637159 36637159 G A CAPNS1 Silent p.G222G 0.21 TCGA-DX-A6YU-01 19 39805295 39805295 C A LRFN1 Missense_Mutation p.D228Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YU-01 19 51499377 51499377 C T KLK8 Missense_Mutation p.V286I 0.23 deleterious(0.02) benign(0.185) TCGA-DX-A6YU-01 19 55316435 55316435 C G KIR2DL4 Silent p.T88T 0.79 TCGA-DX-A6YU-01 19 55610363 55610363 G C PPP1R12C Missense_Mutation p.L278V 0.12 tolerated(0.07) probably_damaging(0.997) TCGA-DX-A6YU-01 1 157805788 157805788 G A CD5L Silent p.S71S 0.30 TCGA-DX-A6YU-01 1 182354511 182354511 G A GLUL Missense_Mutation p.R262W 0.11 deleterious(0.02) possibly_damaging(0.634) TCGA-DX-A6YU-01 1 197871975 197871975 C A C1orf53 Missense_Mutation p.P66T 0.21 tolerated(0.74) benign(0.098) TCGA-DX-A6YU-01 1 201196039 201196039 C T IGFN1 Missense_Mutation p.R3606W 0.19 probably_damaging(0.996) TCGA-DX-A6YU-01 1 209955427 209955427 G A TRAF3IP3 Silent p.V530V 0.16 TCGA-DX-A6YU-01 1 43108234 43108234 C G CCDC30 Missense_Mutation p.Q577E 0.19 tolerated(1) benign(0) TCGA-DX-A6YU-01 20 3914274 3914274 C G RNF24 3'UTR 0.14 TCGA-DX-A6YU-01 2 113484278 113484278 A G NT5DC4 Missense_Mutation p.E378G 0.22 tolerated(0.38) benign(0.002) TCGA-DX-A6YU-01 2 128415042 128415042 A C LIMS2 Missense_Mutation p.Y60D 0.24 deleterious(0) probably_damaging(0.943) TCGA-DX-A6YU-01 2 17836964 17836964 G C VSNL1 3'UTR 0.53 TCGA-DX-A6YU-01 2 224741053 224741053 C T WDFY1 3'UTR 0.23 TCGA-DX-A6YU-01 2 228389621 228389621 C A AGFG1 Missense_Mutation p.N228K 0.18 tolerated(0.12) probably_damaging(0.998) TCGA-DX-A6YU-01 2 60686250 60686250 C T BCL11A 3'UTR 0.53 TCGA-DX-A6YU-01 3 10916711 10916711 G A SLC6A11 Silent p.T274T 0.30 TCGA-DX-A6YU-01 3 113680733 113680733 T - ZDHHC23 3'UTR 0.16 TCGA-DX-A6YU-01 4 122068281 122068281 T C TNIP3 Missense_Mutation p.R297G 0.41 deleterious(0) probably_damaging(0.997) TCGA-DX-A6YU-01 4 39505572 39505584 GCATTTTTTTATG - UGDH Frame_Shift_Del p.H429* 0.19 TCGA-DX-A6YU-01 4 6883463 6883463 C T KIAA0232 3'UTR 0.38 TCGA-DX-A6YU-01 5 37206408 37206408 G - C5orf42 Frame_Shift_Del p.L1014Wfs*36 0.15 TCGA-DX-A6YU-01 5 87501694 87501694 G C TMEM161B Missense_Mutation p.P246R 0.07 deleterious(0) probably_damaging(1) TCGA-DX-A6YU-01 6 117662358 117662358 T C ROS1 Silent p.Q1673Q 0.40 TCGA-DX-A6YU-01 6 137146370 137146370 T C PEX7 Missense_Mutation p.I50T 0.30 deleterious(0) benign(0.158) TCGA-DX-A6YU-01 6 32521699 32521699 C G RNU1-61P 5'Flank 0.78 TCGA-DX-A6YU-01 7 56147316 56147316 G A SUMF2 Missense_Mutation p.G277S 0.17 deleterious_low_confidence(0.04) benign(0) TCGA-DX-A6YU-01 8 143570413 143570413 G A BAI1 Missense_Mutation p.V824M 0.17 tolerated(0.05) possibly_damaging(0.867) TCGA-DX-A6YU-01 8 37734915 37734915 T A RAB11FIP1 Nonsense_Mutation p.K176* 0.21 TCGA-DX-A6YU-01 8 61769387 61769387 G A CHD7 Silent p.R2516R 0.20 TCGA-DX-A6YU-01 9 131398646 131398646 C T WDR34 Missense_Mutation p.R206H 0.22 tolerated(0.15) benign(0) TCGA-DX-A6YU-01 9 95768364 95768364 T C FGD3 Missense_Mutation p.Y247H 0.12 deleterious(0) probably_damaging(1) TCGA-DX-A6YU-01 X 106486567 106486567 G A PIH1D3 3'UTR 0.38 TCGA-DX-A6YU-01 X 151815504 151815504 G A GABRQ Missense_Mutation p.M134I 0.32 deleterious(0.01) possibly_damaging(0.755) TCGA-DX-A6YU-01 X 53106448 53106448 C G GPR173 Silent p.R215R 0.61 TCGA-DX-A6YU-01 X 8993603 8993603 G A FAM9B Missense_Mutation p.L172F 0.18 tolerated(0.35) benign(0.001) TCGA-DX-A6YV-01 10 49659091 49659091 G T ARHGAP22 Missense_Mutation p.R377S 0.24 tolerated(0.81) benign(0.11) TCGA-DX-A6YV-01 10 99118304 99118304 G T RRP12 Missense_Mutation p.L1261I 0.21 deleterious(0) probably_damaging(0.948) TCGA-DX-A6YV-01 11 102826375 102826375 C T MMP13 Silent p.L20L 0.22 TCGA-DX-A6YV-01 11 102985938 102985938 T C DYNC2H1 Missense_Mutation p.W179R 0.54 probably_damaging(0.996) TCGA-DX-A6YV-01 11 123900523 123900523 C T OR10G8 Missense_Mutation p.S65L 0.19 deleterious(0) possibly_damaging(0.848) TCGA-DX-A6YV-01 11 129306746 129306746 A G BARX2 Silent p.A96A 0.51 TCGA-DX-A6YV-01 11 18158913 18158913 G A MRGPRX3 Missense_Mutation p.R55H 0.14 tolerated(0.4) benign(0.047) TCGA-DX-A6YV-01 11 45992834 45992834 C T PHF21A Missense_Mutation p.V149M 0.33 tolerated(0.22) benign(0.115) TCGA-DX-A6YV-01 11 55321815 55321815 T C OR4C15 Silent p.N11N 0.46 TCGA-DX-A6YV-01 11 61049270 61049270 C T VWCE Missense_Mutation p.V259M 0.43 deleterious(0.02) benign(0.404) TCGA-DX-A6YV-01 11 73357504 73357504 C G PLEKHB1 5'UTR 0.46 TCGA-DX-A6YV-01 11 75480099 75480099 C T DGAT2 Silent p.D21D 0.10 TCGA-DX-A6YV-01 11 7982293 7982293 A G NLRP10 Missense_Mutation p.L289P 0.53 deleterious(0) probably_damaging(0.997) TCGA-DX-A6YV-01 11 93097378 93097378 A G CCDC67 Missense_Mutation p.Q117R 0.41 deleterious(0.01) possibly_damaging(0.69) TCGA-DX-A6YV-01 11 93487118 93487118 A G C11orf54 Missense_Mutation p.K82R 0.52 tolerated(0.4) benign(0.038) TCGA-DX-A6YV-01 12 130846070 130846070 G A PIWIL1 Missense_Mutation p.D632N 0.49 deleterious(0.04) probably_damaging(1) TCGA-DX-A6YV-01 12 13102761 13102761 G A GPRC5D Silent p.F186F 0.68 TCGA-DX-A6YV-01 12 132474602 132474602 G T EP400 Missense_Mutation p.A835S 0.23 unknown(0) TCGA-DX-A6YV-01 12 6085286 6085286 G T VWF Missense_Mutation p.S2476R 0.29 tolerated(0.5) probably_damaging(0.928) TCGA-DX-A6YV-01 13 103388807 103388807 A G CCDC168 Missense_Mutation p.V118A 0.59 tolerated(0.66) benign(0.294) TCGA-DX-A6YV-01 13 113742040 113742040 C T MCF2L Missense_Mutation p.T872M 0.31 deleterious(0) possibly_damaging(0.836) TCGA-DX-A6YV-01 13 48923160 48923161 GT - RB1 Splice_Site p.X203_splice 0.48 TCGA-DX-A6YV-01 14 77808090 77808090 G T TMED8 3'UTR 0.21 TCGA-DX-A6YV-01 14 95056410 95056410 A G SERPINA5 Missense_Mutation p.T218A 0.18 deleterious(0.01) benign(0.094) TCGA-DX-A6YV-01 15 24923853 24923853 G C NPAP1 Missense_Mutation p.E947Q 1.00 tolerated(0.38) possibly_damaging(0.607) TCGA-DX-A6YV-01 15 45394141 45394141 C A DUOX2 Missense_Mutation p.A901S 0.10 tolerated(0.11) benign(0.174) TCGA-DX-A6YV-01 15 65489283 65489283 G T CILP Missense_Mutation p.A1114D 0.27 deleterious(0) possibly_damaging(0.588) TCGA-DX-A6YV-01 16 10273963 10273963 G A GRIN2A Silent p.D102D 0.26 TCGA-DX-A6YV-01 16 72829764 72829764 C G ZFHX3 Missense_Mutation p.E2273Q 0.17 probably_damaging(0.992) TCGA-DX-A6YV-01 16 90124319 90124319 C A PRDM7 3'UTR 0.11 TCGA-DX-A6YV-01 17 19265917 19265917 G T B9D1 5'UTR 0.21 TCGA-DX-A6YV-01 17 27414126 27414126 C T MYO18A Missense_Mutation p.R1847H 0.88 deleterious(0) probably_damaging(0.953) TCGA-DX-A6YV-01 17 33884070 33884070 G A SLFN14 Missense_Mutation p.R338W 0.09 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YV-01 17 39262105 39262105 C A KRTAP4-9 Missense_Mutation p.S155R 0.09 deleterious(0.01) unknown(0) TCGA-DX-A6YV-01 17 4579793 4579794 CA - PELP1 Nonsense_Mutation p.C237* 0.34 TCGA-DX-A6YV-01 17 62034874 62034874 C T SCN4A Missense_Mutation p.R675Q 0.20 deleterious(0) probably_damaging(0.951) TCGA-DX-A6YV-01 17 71202403 71202403 T A COG1 Splice_Site p.X873_splice 0.34 TCGA-DX-A6YV-01 17 73584647 73584647 G T MYO15B 5'Flank 0.23 TCGA-DX-A6YV-01 17 79845955 79845955 G A ALYREF 3'UTR 0.48 TCGA-DX-A6YV-01 18 6080907 6080907 C G L3MBTL4 Missense_Mutation p.D473H 0.97 tolerated(0.05) possibly_damaging(0.879) TCGA-DX-A6YV-01 18 76757083 76757083 G A SALL3 Missense_Mutation p.G1222R 0.93 deleterious(0) probably_damaging(0.991) TCGA-DX-A6YV-01 19 15574967 15574967 C T RASAL3 Missense_Mutation p.R68H 0.15 deleterious(0) probably_damaging(0.992) TCGA-DX-A6YV-01 19 23414111 23414111 C A ZNF724P Missense_Mutation p.E61D 0.06 tolerated(0.08) possibly_damaging(0.636) TCGA-DX-A6YV-01 19 31768610 31768610 G T TSHZ3 Missense_Mutation p.P697T 0.33 tolerated(0.3) benign(0.031) TCGA-DX-A6YV-01 19 38696832 38696832 G T SIPA1L3 Missense_Mutation p.Q1766H 0.33 deleterious(0) probably_damaging(0.976) TCGA-DX-A6YV-01 19 49164878 49164878 G T NTN5 3'UTR 0.24 TCGA-DX-A6YV-01 19 51630525 51630525 G T SIGLEC9 Missense_Mutation p.Q329H 0.21 tolerated(0.08) probably_damaging(0.994) TCGA-DX-A6YV-01 19 5212164 5212164 G T PTPRS Missense_Mutation p.L1623I 0.22 tolerated(0.06) probably_damaging(0.999) TCGA-DX-A6YV-01 19 58199254 58199254 C A ZNF551 Silent p.G537G 0.08 TCGA-DX-A6YV-01 1 152275810 152275810 G A FLG Missense_Mutation p.A3851V 0.17 unknown(0) TCGA-DX-A6YV-01 1 156779246 156779246 C T SH2D2A Missense_Mutation p.A261T 0.24 tolerated(0.13) benign(0.178) TCGA-DX-A6YV-01 1 161200322 161200322 C A TOMM40L 3'UTR 0.33 TCGA-DX-A6YV-01 1 161969917 161969917 T A OLFML2B Missense_Mutation p.D312V 0.40 deleterious(0) possibly_damaging(0.655) TCGA-DX-A6YV-01 1 166818200 166818200 T C POGK Silent p.P128P 0.05 TCGA-DX-A6YV-01 1 203823176 203823176 G A ZC3H11A 3'UTR 0.09 TCGA-DX-A6YV-01 1 204095231 204095231 G T SOX13 Missense_Mutation p.S613I 0.25 deleterious(0) probably_damaging(0.997) TCGA-DX-A6YV-01 1 228553210 228553210 G T OBSCN Nonsense_Mutation p.E7295* 0.29 TCGA-DX-A6YV-01 1 229683438 229683438 A T ABCB10 Silent p.I243I 0.21 TCGA-DX-A6YV-01 1 241875181 241875181 G T WDR64 Missense_Mutation p.G341V 0.21 deleterious(0) probably_damaging(0.978) TCGA-DX-A6YV-01 1 47365991 47365991 G A CYP4Z2P RNA 0.37 TCGA-DX-A6YV-01 1 9778916 9778916 C T PIK3CD Silent p.Y395Y 0.17 TCGA-DX-A6YV-01 20 31019471 31019471 G T ASXL1 Missense_Mutation p.R323L 0.27 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YV-01 20 37667908 37667908 G T DHX35 3'UTR 0.27 TCGA-DX-A6YV-01 20 60994726 60994726 G T RBBP8NL 5'UTR 0.20 TCGA-DX-A6YV-01 20 62198675 62198675 G T HELZ2 Missense_Mutation p.T679N 0.38 deleterious(0.01) probably_damaging(0.966) TCGA-DX-A6YV-01 21 33765142 33765142 G T URB1 Silent p.R26R 0.33 TCGA-DX-A6YV-01 21 43543106 43543106 T A UMODL1 Missense_Mutation p.V1126E 0.21 deleterious(0) probably_damaging(0.971) TCGA-DX-A6YV-01 21 47858087 47858087 C T PCNT Missense_Mutation p.A3037V 0.08 possibly_damaging(0.739) TCGA-DX-A6YV-01 22 20127685 20127685 G T ZDHHC8 Missense_Mutation p.G202V 0.25 deleterious(0) probably_damaging(0.929) TCGA-DX-A6YV-01 22 20783840 20783840 G T SCARF2 Silent p.G469G 0.30 TCGA-DX-A6YV-01 2 102476316 102476316 G A MAP4K4 Missense_Mutation p.R565Q 0.81 tolerated_low_confidence(0.61) possibly_damaging(0.781) TCGA-DX-A6YV-01 2 179408838 179408838 T C TTN Missense_Mutation p.I32011M 0.30 TCGA-DX-A6YV-01 2 208773281 208773281 A C PLEKHM3 Missense_Mutation p.L636R 0.88 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YV-01 2 215901710 215901710 G A ABCA12 Missense_Mutation p.H318Y 0.43 tolerated(0.37) possibly_damaging(0.759) TCGA-DX-A6YV-01 2 216225733 216225733 C G FN1 3'UTR 0.52 TCGA-DX-A6YV-01 2 230701625 230701625 G T TRIP12 Missense_Mutation p.S361R 0.20 deleterious(0.04) benign(0.015) TCGA-DX-A6YV-01 2 241569854 241569854 G T GPR35 Missense_Mutation p.C193F 0.20 deleterious(0) probably_damaging(1) TCGA-DX-A6YV-01 2 27800379 27800379 C A C2orf16 Missense_Mutation p.Q314K 0.46 deleterious(0.04) benign(0.002) TCGA-DX-A6YV-01 2 55543081 55543081 G T CCDC88A Missense_Mutation p.L1305M 0.20 deleterious(0.03) probably_damaging(0.945) TCGA-DX-A6YV-01 2 71788907 71788907 A G DYSF Missense_Mutation p.T748A 0.44 tolerated(0.29) benign(0.009) TCGA-DX-A6YV-01 3 122471498 122471498 C T HSPBAP1 Nonsense_Mutation p.W255* 0.97 TCGA-DX-A6YV-01 3 1320178 1320178 C T CNTN6 Missense_Mutation p.P147L 0.57 deleterious(0) probably_damaging(1) TCGA-DX-A6YV-01 3 44700296 44700296 T C ZNF35 Silent p.P147P 0.07 TCGA-DX-A6YV-01 4 17510945 17510945 G A QDPR Silent p.S49S 0.39 TCGA-DX-A6YV-01 4 37592170 37592170 G T C4orf19 Missense_Mutation p.A165S 0.22 deleterious(0.05) benign(0.436) TCGA-DX-A6YV-01 4 55970835 55970835 G A KDR Silent p.C654C 0.66 TCGA-DX-A6YV-01 5 140590376 140590376 C A PCDHB12 Missense_Mutation p.R633S 0.17 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-DX-A6YV-01 5 140764708 140764708 G A PCDHGA7 Missense_Mutation p.A748T 0.47 deleterious_low_confidence(0.04) benign(0.242) TCGA-DX-A6YV-01 5 150885169 150885169 A G FAT2 Missense_Mutation p.M4336T 0.52 benign(0.007) TCGA-DX-A6YV-01 5 50685479 50685479 G T ISL1 Splice_Site p.X160_splice 0.24 TCGA-DX-A6YV-01 5 98199259 98199259 G T CHD1 Missense_Mutation p.A1427D 0.22 deleterious(0.01) benign(0.272) TCGA-DX-A6YV-01 6 7862686 7862686 C T BMP6 Missense_Mutation p.R387C 0.42 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YV-01 7 100179403 100179403 C T LRCH4 Missense_Mutation p.E199K 0.28 deleterious(0.03) benign(0.196) TCGA-DX-A6YV-01 7 100421402 100421402 A C EPHB4 Missense_Mutation p.F92C 0.52 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YV-01 7 141756659 141756659 A G MGAM Missense_Mutation p.T1204A 0.34 deleterious(0) probably_damaging(0.947) TCGA-DX-A6YV-01 7 141871138 141871138 G A RP11-1220K2.2 Silent p.P1083P 0.56 TCGA-DX-A6YV-01 7 72849831 72849831 G A FZD9 Silent p.S498S 0.31 TCGA-DX-A6YV-01 8 133816073 133816073 G T PHF20L1 Missense_Mutation p.A173S 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-DX-A6YV-01 8 144943066 144943066 G A EPPK1 Silent p.A1452A 0.94 TCGA-DX-A6YV-01 8 41367115 41367115 G T GOLGA7 3'UTR 0.20 TCGA-DX-A6YV-01 9 113261434 113261434 G A SVEP1 Missense_Mutation p.T523M 0.60 benign(0.026) TCGA-DX-A6YV-01 9 135933429 135933429 C T GTF3C5 3'UTR 0.17 TCGA-DX-A6YV-01 9 74764466 74764466 C T GDA 5'UTR 0.31 TCGA-DX-A6YV-01 9 90584261 90584261 G T CDK20 Missense_Mutation p.L231I 0.21 tolerated(0.61) benign(0.004) TCGA-DX-A6YV-01 9 96051696 96051696 G A WNK2 Missense_Mutation p.E1591K 0.67 unknown(0) TCGA-DX-A6YV-01 X 103495047 103495047 C T ESX1 Silent p.P361P 0.75 TCGA-DX-A6YV-01 X 55028033 55028033 G T APEX2 Missense_Mutation p.S71I 0.22 deleterious(0) probably_damaging(0.98) TCGA-DX-A6YV-01 X 73065142 73065142 A G XIST RNA 0.06 TCGA-DX-A6YV-01 X 73960694 73960694 T C KIAA2022 Missense_Mutation p.N1233S 1.00 tolerated(0.15) benign(0.005) TCGA-DX-A6YX-01 10 134628237 134628237 C T TTC40 Missense_Mutation p.R2401Q 0.49 deleterious(0.01) probably_damaging(0.996) TCGA-DX-A6YX-01 10 22032517 22032517 A G MLLT10 3'UTR 0.83 TCGA-DX-A6YX-01 10 28908911 28908913 GGG - WAC 3'UTR 0.71 TCGA-DX-A6YX-01 10 61551534 61551534 T G CCDC6 3'UTR 0.41 TCGA-DX-A6YX-01 10 68280512 68280512 G - CTNNA3 Frame_Shift_Del p.A465Vfs*33 0.41 TCGA-DX-A6YX-01 11 110102619 110102619 C T RDX Missense_Mutation p.R576H 0.07 deleterious(0) possibly_damaging(0.595) TCGA-DX-A6YX-01 11 281833 281833 G T NLRP6 Missense_Mutation p.G700V 0.15 tolerated(0.11) possibly_damaging(0.454) TCGA-DX-A6YX-01 11 33094567 33094567 C T TCP11L1 3'UTR 0.18 TCGA-DX-A6YX-01 12 113401152 113401152 A G OAS3 Missense_Mutation p.N707D 0.31 tolerated(0.06) possibly_damaging(0.491) TCGA-DX-A6YX-01 14 72924986 72924986 A C RGS6 Silent p.A81A 0.25 TCGA-DX-A6YX-01 15 25460742 25460742 C T SNORD115-25 RNA 0.55 TCGA-DX-A6YX-01 15 49170547 49170552 GGAGGA - EID1 In_Frame_Del p.E61_E62del 0.31 TCGA-DX-A6YX-01 15 91578573 91578573 A G AC068831.10 RNA 0.13 TCGA-DX-A6YX-01 16 24837233 24837233 G A TNRC6A 3'UTR 0.11 TCGA-DX-A6YX-01 16 58572108 58572108 C T CNOT1 Missense_Mutation p.R1733H 0.09 deleterious(0.01) benign(0.207) TCGA-DX-A6YX-01 16 69354619 69354619 G A VPS4A Silent p.L266L 0.93 TCGA-DX-A6YX-01 16 70211261 70211261 C A CLEC18C Missense_Mutation p.L112M 0.08 tolerated(0.11) probably_damaging(0.933) TCGA-DX-A6YX-01 17 18023164 18023164 C T MYO15A Silent p.D350D 0.88 TCGA-DX-A6YX-01 17 26671442 26671442 A G TNFAIP1 Missense_Mutation p.Y256C 0.83 deleterious(0) possibly_damaging(0.882) TCGA-DX-A6YX-01 17 38420783 38420783 C G WIPF2 Missense_Mutation p.R119G 0.07 deleterious(0.01) benign(0.022) TCGA-DX-A6YX-01 17 42851671 42851671 C T ADAM11 Missense_Mutation p.T334I 0.31 deleterious(0.05) possibly_damaging(0.542) TCGA-DX-A6YX-01 17 62018305 62018305 C G SCN4A Missense_Mutation p.M1779I 0.39 tolerated_low_confidence(0.4) benign(0) TCGA-DX-A6YX-01 17 62552085 62552085 C T SMURF2 Missense_Mutation p.R488Q 0.53 deleterious(0) probably_damaging(1) TCGA-DX-A6YX-01 17 76497441 76497441 G A DNAH17-AS1 3'UTR 0.57 TCGA-DX-A6YX-01 19 23329315 23329315 G C ZNF730 Missense_Mutation p.R490T 0.55 tolerated(0.23) benign(0.019) TCGA-DX-A6YX-01 19 38324091 38324091 C A AC016582.2 RNA 0.23 TCGA-DX-A6YX-01 19 40721091 40721091 G A MAP3K10 Silent p.P919P 0.25 TCGA-DX-A6YX-01 19 49207394 49207394 A G FUT2 3'UTR 0.38 TCGA-DX-A6YX-01 19 49933284 49933284 C T SLC17A7 3'UTR 0.25 TCGA-DX-A6YX-01 19 50059876 50059876 C A NOSIP Nonsense_Mutation p.E219* 0.15 TCGA-DX-A6YX-01 19 5456439 5456439 C T ZNRF4 Silent p.L313L 0.27 TCGA-DX-A6YX-01 19 54760408 54760408 T G LILRB5 Missense_Mutation p.Y100S 0.25 tolerated(0.07) probably_damaging(0.99) TCGA-DX-A6YX-01 19 9026241 9026241 G A MUC16 Missense_Mutation p.R12249C 0.15 possibly_damaging(0.888) TCGA-DX-A6YX-01 1 243666609 243666609 T A AKT3 3'UTR 0.84 TCGA-DX-A6YX-01 1 35917355 35917355 C T KIAA0319L Missense_Mutation p.E646K 0.11 tolerated(0.14) benign(0.01) TCGA-DX-A6YX-01 1 89299304 89299304 G T PKN2 3'UTR 0.40 TCGA-DX-A6YX-01 20 18541428 18541428 C T SEC23B 3'UTR 0.36 TCGA-DX-A6YX-01 20 23514877 23514877 C T CST13P RNA 0.35 TCGA-DX-A6YX-01 20 25058388 25058388 C T VSX1 Silent p.P247P 0.06 TCGA-DX-A6YX-01 20 35443856 35443856 G A SOGA1 Silent p.V663V 0.56 TCGA-DX-A6YX-01 20 43936940 43936940 G T MATN4 Intron 0.17 TCGA-DX-A6YX-01 22 38617575 38617575 G T TMEM184B Silent p.T375T 0.18 TCGA-DX-A6YX-01 2 100623357 100623357 C T AFF3 Missense_Mutation p.A229T 0.17 tolerated(0.38) benign(0.004) TCGA-DX-A6YX-01 2 166243439 166243439 G A SCN2A Missense_Mutation p.V1579M 0.89 deleterious(0.02) possibly_damaging(0.787) TCGA-DX-A6YX-01 2 171822901 171822901 C T GORASP2 3'UTR 0.09 TCGA-DX-A6YX-01 2 37478579 37478579 C G PRKD3 3'UTR 0.47 TCGA-DX-A6YX-01 2 64193060 64193060 G A VPS54 Missense_Mutation p.T178I 0.08 deleterious(0.04) benign(0.093) TCGA-DX-A6YX-01 2 74909127 74909127 G T SEMA4F 3'UTR 0.18 TCGA-DX-A6YX-01 3 185866797 185866797 G A DGKG 3'UTR 0.10 TCGA-DX-A6YX-01 3 89259542 89259542 C T EPHA3 Missense_Mutation p.S229F 0.37 deleterious(0) possibly_damaging(0.525) TCGA-DX-A6YX-01 4 70465033 70465033 A G UGT2A1 Silent p.P475P 0.37 TCGA-DX-A6YX-01 5 115822489 115822489 G A SEMA6A Silent p.N306N 0.37 TCGA-DX-A6YX-01 5 13829759 13829759 G A DNAH5 Missense_Mutation p.R2102C 0.10 possibly_damaging(0.898) TCGA-DX-A6YX-01 5 140347582 140347582 C G PCDHAC2 Missense_Mutation p.R411G 0.60 tolerated(0.06) benign(0.025) TCGA-DX-A6YX-01 5 154394598 154394598 G A KIF4B Silent p.Q393Q 0.27 TCGA-DX-A6YX-01 5 160067522 160067522 C A ATP10B Missense_Mutation p.D316Y 0.55 deleterious(0) possibly_damaging(0.886) TCGA-DX-A6YX-01 5 169504797 169504797 C T DOCK2 Silent p.S1650S 0.33 TCGA-DX-A6YX-01 5 216935 216935 C G CCDC127 Missense_Mutation p.W10C 0.54 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YX-01 6 151869452 151869452 G A CCDC170 Missense_Mutation p.R201H 0.08 tolerated(0.33) benign(0.001) TCGA-DX-A6YX-01 7 121623806 121623806 C A PTPRZ1 Missense_Mutation p.T236K 0.55 deleterious(0) probably_damaging(1) TCGA-DX-A6YX-01 7 128486157 128486160 ACCT - FLNC Frame_Shift_Del p.T1302Mfs*2 0.22 TCGA-DX-A6YX-01 7 15651063 15651063 T C MEOX2 3'UTR 0.41 TCGA-DX-A6YX-01 7 1887286 1887286 C T AC110781.3 Silent p.L177L 0.32 TCGA-DX-A6YX-01 7 62809612 62809612 C T AC006455.1 5'UTR 0.31 TCGA-DX-A6YX-01 7 97835035 97835035 C T LMTK2 3'UTR 0.25 TCGA-DX-A6YX-01 8 10469906 10469906 C T RP1L1 Missense_Mutation p.A568T 0.66 benign(0.142) TCGA-DX-A6YX-01 8 11995025 11995025 G A USP17L2 Silent p.L415L 0.63 TCGA-DX-A6YX-01 8 11995496 11995496 G C USP17L2 Silent p.L258L 0.45 TCGA-DX-A6YX-01 8 133759251 133759251 G A TMEM71 Missense_Mutation p.P123S 0.62 tolerated(0.7) benign(0.05) TCGA-DX-A6YX-01 8 28974507 28974507 G A KIF13B Silent p.S1226S 0.55 TCGA-DX-A6YX-01 9 35740618 35740618 G A GBA2 Missense_Mutation p.T345I 0.88 tolerated(0.27) benign(0.026) TCGA-DX-A6YX-01 9 37860098 37860098 A T DCAF10 Missense_Mutation p.S407C 0.68 deleterious(0.02) possibly_damaging(0.527) TCGA-DX-A6YX-01 9 77377111 77377111 C A TRPM6 Missense_Mutation p.K1492N 0.11 tolerated_low_confidence(0.47) benign(0.021) TCGA-DX-A6YX-01 X 111914310 111914310 G A LHFPL1 Silent p.V103V 0.29 TCGA-DX-A6YX-01 X 119293221 119293221 G A RHOXF2 Missense_Mutation p.G127E 0.31 tolerated(0.3) probably_damaging(0.996) TCGA-DX-A6YX-01 X 30260295 30260295 C T MAGEB4 Missense_Mutation p.R15C 0.35 deleterious(0.03) possibly_damaging(0.89) TCGA-DX-A6YX-01 X 57934260 57934260 T G ZXDA 3'UTR 0.25 TCGA-DX-A6YX-01 X 80532631 80532631 T C SH3BGRL Missense_Mutation p.L65P 0.35 deleterious(0) probably_damaging(0.928) TCGA-DX-A6YX-01 X 9693767 9693767 G C GPR143 3'UTR 0.58 TCGA-DX-A6YZ-01 10 7604944 7604944 A T ITIH5 3'UTR 0.20 TCGA-DX-A6YZ-01 11 10051374 10051374 A G SBF2 Missense_Mutation p.S151P 0.31 tolerated(0.64) benign(0.001) TCGA-DX-A6YZ-01 11 123479374 123479374 C A GRAMD1B Silent p.V364V 0.26 TCGA-DX-A6YZ-01 11 17316992 17316992 A G NUCB2 Missense_Mutation p.E41G 0.09 deleterious(0.02) benign(0.003) TCGA-DX-A6YZ-01 11 3657344 3657344 C A ART5 3'Flank 0.29 TCGA-DX-A6YZ-01 11 92568224 92568224 G A FAT3 Missense_Mutation p.A3354T 0.20 benign(0.176) TCGA-DX-A6YZ-01 12 110902999 110902999 C A GPN3 Missense_Mutation p.M62I 0.36 tolerated(0.32) benign(0.005) TCGA-DX-A6YZ-01 12 123201109 123201109 C T HCAR3 Nonsense_Mutation p.W59* 0.05 TCGA-DX-A6YZ-01 12 3747504 3747504 G T EFCAB4B Missense_Mutation p.P463Q 0.24 tolerated(0.18) benign(0.068) TCGA-DX-A6YZ-01 12 40345132 40345132 G T SLC2A13 Missense_Mutation p.P321T 0.19 tolerated(0.25) benign(0.348) TCGA-DX-A6YZ-01 12 5026866 5026866 A T KCNA1 3'UTR 0.29 TCGA-DX-A6YZ-01 12 72179680 72179681 - T RAB21 3'UTR 0.56 TCGA-DX-A6YZ-01 12 75900574 75900574 A G KRR1 Silent p.V127V 0.11 TCGA-DX-A6YZ-01 12 96180807 96180807 G A NTN4 Silent p.S165S 0.14 TCGA-DX-A6YZ-01 14 100166360 100166360 G A CYP46A1 Missense_Mutation p.G122D 0.07 deleterious(0) probably_damaging(1) TCGA-DX-A6YZ-01 14 22980005 22980005 C A TRAJ31 Missense_Mutation p.P19H 0.20 unknown(0) TCGA-DX-A6YZ-01 14 89076098 89076098 G A ZC3H14 Missense_Mutation p.R683H 0.32 deleterious(0.02) probably_damaging(0.969) TCGA-DX-A6YZ-01 14 92268696 92268696 T G TC2N Missense_Mutation p.Y124S 0.17 tolerated(0.21) benign(0.019) TCGA-DX-A6YZ-01 15 41483675 41483675 G C EXD1 Missense_Mutation p.L219V 0.25 tolerated(0.5) benign(0.03) TCGA-DX-A6YZ-01 16 1245004 1245004 T A CACNA1H Missense_Mutation p.M111K 0.07 deleterious(0) benign(0.345) TCGA-DX-A6YZ-01 16 15023483 15023483 C T RP11-958N24.1 RNA 0.29 TCGA-DX-A6YZ-01 16 1547395 1547395 C G TELO2 Missense_Mutation p.A239G 0.05 deleterious(0) benign(0.039) TCGA-DX-A6YZ-01 16 20651783 20651783 C T ACSM1 Silent p.T372T 0.45 TCGA-DX-A6YZ-01 16 30596933 30596933 G T ZNF785 5'UTR 0.13 TCGA-DX-A6YZ-01 17 48917817 48917817 G A WFIKKN2 Missense_Mutation p.A390T 0.15 tolerated(0.12) benign(0.036) TCGA-DX-A6YZ-01 17 64881179 64881179 A T CACNG5 Missense_Mutation p.Y217F 0.25 deleterious(0.01) probably_damaging(0.937) TCGA-DX-A6YZ-01 17 70642324 70642324 G C SLC39A11 3'UTR 0.12 TCGA-DX-A6YZ-01 17 70642357 70642357 G C SLC39A11 3'UTR 0.11 TCGA-DX-A6YZ-01 17 8110163 8110163 T A AURKB Missense_Mutation p.R148W 0.21 deleterious(0) probably_damaging(0.951) TCGA-DX-A6YZ-01 18 29648272 29648272 A T RNF125 Silent p.I208I 0.21 TCGA-DX-A6YZ-01 19 13084345 13084345 C T DAND5 Missense_Mutation p.A156V 0.29 tolerated(1) benign(0.03) TCGA-DX-A6YZ-01 19 43523004 43523004 C A PSG11 Missense_Mutation p.K209N 0.13 deleterious(0.02) benign(0.168) TCGA-DX-A6YZ-01 19 53678802 53678802 A G ZNF665 Missense_Mutation p.V13A 0.10 deleterious(0) probably_damaging(0.998) TCGA-DX-A6YZ-01 19 54314363 54314363 C T NLRP12 Missense_Mutation p.A184T 0.18 tolerated(0.25) benign(0.022) TCGA-DX-A6YZ-01 19 54723010 54723010 G A LILRB3 Missense_Mutation p.H472Y 0.10 tolerated(1) possibly_damaging(0.756) TCGA-DX-A6YZ-01 19 8386227 8386227 G A NDUFA7 Missense_Mutation p.R6C 0.26 deleterious(0.01) probably_damaging(0.939) TCGA-DX-A6YZ-01 1 114442394 114442394 C A AP4B1 Intron 0.26 TCGA-DX-A6YZ-01 1 15987514 15987514 C T RSC1A1 Missense_Mutation p.T384I 0.56 tolerated(0.09) benign(0.033) TCGA-DX-A6YZ-01 1 162722976 162722976 C G DDR2 Silent p.A58A 0.26 TCGA-DX-A6YZ-01 1 198685831 198685831 G T PTPRC Missense_Mutation p.D438Y 0.19 tolerated(0.06) benign(0.252) TCGA-DX-A6YZ-01 1 214170025 214170025 T C PROX1 Silent p.G49G 0.24 TCGA-DX-A6YZ-01 20 43804753 43804753 A C PI3 Missense_Mutation p.M111L 0.19 tolerated(0.18) benign(0.002) TCGA-DX-A6YZ-01 20 55908249 55908249 A T SPO11 Missense_Mutation p.E84V 0.10 tolerated(0.14) benign(0.025) TCGA-DX-A6YZ-01 20 57768815 57768815 C A ZNF831 Missense_Mutation p.A914E 0.08 tolerated(0.05) benign(0.002) TCGA-DX-A6YZ-01 21 15561704 15561704 C T LIPI Missense_Mutation p.S49N 0.07 tolerated(0.64) benign(0.026) TCGA-DX-A6YZ-01 21 34697383 34697383 C A IFNAR1 Missense_Mutation p.A8E 0.28 deleterious(0.01) unknown(0) TCGA-DX-A6YZ-01 21 45539347 45539347 G A PWP2 Silent p.V377V 0.15 TCGA-DX-A6YZ-01 22 18769662 18769662 G A GGT3P RNA 0.04 TCGA-DX-A6YZ-01 22 19961646 19961646 C T ARVCF Missense_Mutation p.G693S 0.33 deleterious(0.02) probably_damaging(0.937) TCGA-DX-A6YZ-01 22 44335890 44335890 A T PNPLA3 Nonsense_Mutation p.K333* 0.26 TCGA-DX-A6YZ-01 22 50297002 50297002 G - ALG12 3'UTR 0.13 TCGA-DX-A6YZ-01 2 113513727 113513727 G A CKAP2L Silent p.N407N 0.22 TCGA-DX-A6YZ-01 2 140990499 140990499 T A LRP1B 3'UTR 0.19 TCGA-DX-A6YZ-01 2 153494158 153494158 T C FMNL2 Silent p.P972P 0.10 TCGA-DX-A6YZ-01 2 166805913 166805913 G A TTC21B Missense_Mutation p.P85S 0.22 tolerated(0.52) benign(0.001) TCGA-DX-A6YZ-01 2 175243727 175243727 A T CIR1 Missense_Mutation p.H136Q 0.18 deleterious(0) unknown(0) TCGA-DX-A6YZ-01 2 179604055 179604055 C A TTN Silent p.V4635V 0.18 TCGA-DX-A6YZ-01 2 180725629 180725629 G A ZNF385B Intron 0.24 TCGA-DX-A6YZ-01 2 186655562 186655562 A C FSIP2 Missense_Mutation p.L1322F 0.11 probably_damaging(0.999) TCGA-DX-A6YZ-01 2 21225251 21225251 A G APOB Missense_Mutation p.L4348S 0.08 possibly_damaging(0.462) TCGA-DX-A6YZ-01 2 50170914 50170914 G A NRXN1 Missense_Mutation p.L1422F 0.15 deleterious(0) benign(0.043) TCGA-DX-A6YZ-01 2 60684820 60684820 T C BCL11A 3'UTR 0.08 TCGA-DX-A6YZ-01 3 138461596 138461596 T A PIK3CB Missense_Mutation p.D142V 0.19 deleterious(0.02) probably_damaging(0.99) TCGA-DX-A6YZ-01 3 185362116 185362116 A T IGF2BP2 3'UTR 0.09 TCGA-DX-A6YZ-01 3 37094756 37094756 A G LRRFIP2 3'UTR 0.17 TCGA-DX-A6YZ-01 3 3886327 3886327 T A LRRN1 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) benign(0.037) TCGA-DX-A6YZ-01 3 42299608 42299608 C A CCK Missense_Mutation p.E110D 0.20 tolerated(0.07) benign(0.06) TCGA-DX-A6YZ-01 3 45944356 45944356 G A CCR9 3'UTR 0.35 TCGA-DX-A6YZ-01 3 48717125 48717125 G A NCKIPSD Silent p.L458L 0.24 TCGA-DX-A6YZ-01 3 49679989 49679989 C G BSN Missense_Mutation p.Q308E 0.19 unknown(0) TCGA-DX-A6YZ-01 3 52245436 52245436 C T ALAS1 Missense_Mutation p.R490W 0.10 deleterious(0) probably_damaging(0.932) TCGA-DX-A6YZ-01 3 52412622 52412622 G C DNAH1 Silent p.G2401G 0.18 TCGA-DX-A6YZ-01 3 88041355 88041355 C A HTR1F 3'UTR 0.13 TCGA-DX-A6YZ-01 3 97983472 97983472 T A OR5H6 Missense_Mutation p.V115E 0.21 deleterious(0.01) benign(0.439) TCGA-DX-A6YZ-01 4 100228878 100228878 T C ADH1B 3'UTR 0.15 TCGA-DX-A6YZ-01 4 106816790 106816790 C A NPNT 5'UTR 0.19 TCGA-DX-A6YZ-01 4 119473438 119473438 G A CEP170P1 RNA 0.18 TCGA-DX-A6YZ-01 4 155507582 155507582 G C FGA Missense_Mutation p.S333R 0.18 tolerated_low_confidence(0.47) benign(0.001) TCGA-DX-A6YZ-01 4 156784866 156784866 T C ASIC5 Silent p.P27P 0.16 TCGA-DX-A6YZ-01 4 47596477 47596477 A G CORIN 3'UTR 0.11 TCGA-DX-A6YZ-01 4 49009292 49009292 A G CWH43 Missense_Mutation p.K379E 0.04 tolerated(0.07) possibly_damaging(0.457) TCGA-DX-A6YZ-01 4 57516895 57516895 C T HOPX Silent p.P94P 0.08 TCGA-DX-A6YZ-01 4 66509122 66509122 C G EPHA5 Missense_Mutation p.V69L 0.16 tolerated(0.11) probably_damaging(0.956) TCGA-DX-A6YZ-01 5 10973707 10973707 C T CTNND2 Missense_Mutation p.R1179H 0.13 deleterious_low_confidence(0.05) possibly_damaging(0.715) TCGA-DX-A6YZ-01 5 139751133 139751133 C G SLC4A9 Missense_Mutation p.T889R 0.22 deleterious(0) probably_damaging(1) TCGA-DX-A6YZ-01 5 140347067 140347067 G T PCDHAC2 Missense_Mutation p.G239V 0.19 deleterious(0) probably_damaging(0.999) TCGA-DX-A6YZ-01 5 167944910 167944910 G A RARS Nonsense_Mutation p.W572* 0.06 TCGA-DX-A6YZ-01 5 65376103 65376103 C T ERBB2IP 3'Flank 0.17 TCGA-DX-A6YZ-01 6 46806881 46806881 G T MEP1A 3'UTR 0.18 TCGA-DX-A6YZ-01 6 50696680 50696680 G A TFAP2D Missense_Mutation p.R237H 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-DX-A6YZ-01 6 56035906 56035906 T C COL21A1 Missense_Mutation p.I221V 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-DX-A6YZ-01 6 64791889 64791889 C A EYS Missense_Mutation p.G2144V 0.09 deleterious(0.04) benign(0.01) TCGA-DX-A6YZ-01 7 103185582 103185582 T A RELN Missense_Mutation p.D2171V 0.09 deleterious(0) probably_damaging(0.973) TCGA-DX-A6YZ-01 7 142881433 142881433 T A TAS2R39 Missense_Mutation p.S308T 0.17 deleterious(0.03) probably_damaging(0.98) TCGA-DX-A6YZ-01 7 150691049 150691049 G T NOS3 Missense_Mutation p.S53I 0.11 tolerated(0.08) benign(0) TCGA-DX-A6YZ-01 7 24839766 24839766 A G OSBPL3 3'UTR 0.30 TCGA-DX-A6YZ-01 7 44189417 44189417 C A GCK Silent p.V208V 0.33 TCGA-DX-A6YZ-01 8 10584160 10584160 C T SOX7 Silent p.A137A 0.19 TCGA-DX-A6YZ-01 8 133851693 133851693 C A PHF20L1 Nonsense_Mutation p.C751* 0.19 TCGA-DX-A6YZ-01 8 143425753 143425753 C T TSNARE1 Missense_Mutation p.A107T 0.06 tolerated_low_confidence(0.47) benign(0.057) TCGA-DX-A6YZ-01 8 39332221 39332221 G T ADAM3A RNA 0.11 TCGA-DX-A6YZ-01 8 63973723 63973723 G T TTPA 3'UTR 0.21 TCGA-DX-A6YZ-01 8 68170325 68170325 G T ARFGEF1 Missense_Mutation p.N812K 0.12 deleterious(0) probably_damaging(1) TCGA-DX-A6YZ-01 8 94827578 94827578 C T TMEM67 Missense_Mutation p.A937V 0.17 tolerated(0.31) benign(0.126) TCGA-DX-A6YZ-01 9 106888967 106888967 C T SMC2 Missense_Mutation p.H833Y 0.07 tolerated(1) benign(0.015) TCGA-DX-A6YZ-01 9 107266907 107266907 C T OR13F1 Missense_Mutation p.R122W 0.15 deleterious(0.01) probably_damaging(0.984) TCGA-DX-A6YZ-01 9 117849123 117849123 T A TNC Missense_Mutation p.E296V 0.14 deleterious(0.01) probably_damaging(0.942) TCGA-DX-A6YZ-01 9 136333113 136333113 A T CACFD1 Missense_Mutation p.T131S 0.34 tolerated(0.09) possibly_damaging(0.58) TCGA-DX-A6YZ-01 9 19516346 19516346 A G SLC24A2 Silent p.A597A 0.18 TCGA-DX-A6YZ-01 9 78773965 78773965 C A PCSK5 Missense_Mutation p.N499K 0.12 deleterious(0.02) probably_damaging(0.913) TCGA-DX-A6YZ-01 9 95155370 95155370 A G OGN Missense_Mutation p.I142T 0.14 tolerated(0.07) benign(0.226) TCGA-DX-A6YZ-01 X 105450550 105450550 C T MUM1L1 Silent p.D375D 0.52 TCGA-DX-A6YZ-01 X 107924142 107924142 G C COL4A5 Missense_Mutation p.G1348A 0.19 probably_damaging(0.996) TCGA-DX-A6YZ-01 X 125954692 125954692 G T CXorf64 Missense_Mutation p.G24V 0.50 tolerated(0.15) benign(0.441) TCGA-DX-A6YZ-01 X 148074587 148074587 C T AFF2 3'UTR 0.33 TCGA-DX-A6YZ-01 X 54471945 54471946 AC - FGD1 3'UTR 0.21 TCGA-DX-A6YZ-01 Y 6911064 6911064 C T TBL1Y Silent p.I34I 0.08 TCGA-DX-A6Z0-01 10 115962849 115962849 G A TDRD1 Missense_Mutation p.V239I 0.39 tolerated(0.35) benign(0.001) TCGA-DX-A6Z0-01 10 120070202 120070202 C G FAM204A 3'UTR 0.25 TCGA-DX-A6Z0-01 10 135077247 135077247 G A ADAM8 Missense_Mutation p.P781L 0.05 deleterious(0.03) probably_damaging(0.999) TCGA-DX-A6Z0-01 10 47087136 47087136 C A NPY4R Missense_Mutation p.A118D 0.18 deleterious(0.01) benign(0.371) TCGA-DX-A6Z0-01 11 124179847 124179847 C A OR8D1 Missense_Mutation p.K272N 0.31 tolerated(0.08) probably_damaging(0.986) TCGA-DX-A6Z0-01 11 20939733 20939733 C T NELL1 Silent p.I203I 0.15 TCGA-DX-A6Z0-01 11 28351972 28351972 C T METTL15 Missense_Mutation p.R270W 0.08 deleterious(0) probably_damaging(0.997) TCGA-DX-A6Z0-01 11 58477983 58477983 G T GLYAT Intron 0.28 TCGA-DX-A6Z0-01 11 71707453 71707453 G A RNF121 3'UTR 0.12 TCGA-DX-A6Z0-01 12 32133855 32133855 G T KIAA1551 5'UTR 0.33 TCGA-DX-A6Z0-01 12 50616294 50616294 G T LIMA1 Intron 0.14 TCGA-DX-A6Z0-01 12 53580211 53580211 G A ZNF740 Missense_Mutation p.R137H 0.19 deleterious(0) possibly_damaging(0.812) TCGA-DX-A6Z0-01 14 44976108 44976108 G A FSCB Missense_Mutation p.T28I 0.21 deleterious(0.05) possibly_damaging(0.554) TCGA-DX-A6Z0-01 15 23259867 23259867 G T GOLGA8I Missense_Mutation p.E179D 0.19 deleterious(0) probably_damaging(0.999) TCGA-DX-A6Z0-01 15 65621813 65621813 C T IGDCC3 Missense_Mutation p.R707Q 0.20 tolerated_low_confidence(0.59) benign(0.003) TCGA-DX-A6Z0-01 16 57609003 57609003 C T GPR114 Silent p.Y495Y 0.24 TCGA-DX-A6Z0-01 17 27038738 27038738 T C PROCA1 5'UTR 0.15 TCGA-DX-A6Z0-01 17 41955044 41955044 C T MPP2 3'UTR 0.08 TCGA-DX-A6Z0-01 17 42158226 42158226 G C HDAC5 Missense_Mutation p.Q879E 0.15 deleterious(0.02) possibly_damaging(0.832) TCGA-DX-A6Z0-01 17 7577074 7577075 - TTCTC TP53 Frame_Shift_Ins p.N288Kfs*59 0.51 TCGA-DX-A6Z0-01 19 11489388 11489388 G A EPOR Silent p.T298T 0.20 TCGA-DX-A6Z0-01 19 14043860 14043860 C T PODNL1 Silent p.V399V 0.12 TCGA-DX-A6Z0-01 19 23329661 23329661 C T ZNF730 3'UTR 0.37 TCGA-DX-A6Z0-01 19 47124905 47124905 C T PTGIR Missense_Mutation p.A265T 0.11 tolerated(0.44) benign(0.009) TCGA-DX-A6Z0-01 19 504982 504982 C A MADCAM1 3'UTR 0.15 TCGA-DX-A6Z0-01 19 54625279 54625279 C T PRPF31 Silent p.I93I 0.21 TCGA-DX-A6Z0-01 19 7916385 7916385 G A EVI5L Silent p.S273S 0.28 TCGA-DX-A6Z0-01 19 8197971 8197971 G A FBN3 Silent p.T537T 0.54 TCGA-DX-A6Z0-01 19 8430863 8430863 G A ANGPTL4 Missense_Mutation p.R115K 0.44 tolerated(0.06) benign(0.02) TCGA-DX-A6Z0-01 1 154557181 154557181 G A ADAR 3'UTR 0.14 TCGA-DX-A6Z0-01 1 182921960 182921960 C T SHCBP1L Silent p.A103A 0.07 TCGA-DX-A6Z0-01 1 200143917 200143917 C T NR5A2 3'UTR 0.42 TCGA-DX-A6Z0-01 1 216500945 216500945 G T USH2A Missense_Mutation p.A279E 0.34 possibly_damaging(0.511) TCGA-DX-A6Z0-01 1 238090237 238090237 G T RP11-193H5.1 RNA 0.30 TCGA-DX-A6Z0-01 1 247003195 247003195 C A AHCTF1 3'UTR 0.18 TCGA-DX-A6Z0-01 1 3679935 3679935 G A CCDC27 Silent p.S406S 0.24 TCGA-DX-A6Z0-01 1 67244445 67244445 G T TCTEX1D1 3'UTR 0.22 TCGA-DX-A6Z0-01 20 21142511 21142511 G A RP4-777D9.2 Intron 0.12 TCGA-DX-A6Z0-01 20 44669254 44669254 G A SLC12A5 Splice_Site p.X308_splice 0.31 TCGA-DX-A6Z0-01 21 11020842 11020842 A T BAGE2 RNA 0.08 TCGA-DX-A6Z0-01 21 41496170 41496170 G A DSCAM Silent p.N1216N 0.23 TCGA-DX-A6Z0-01 2 107069174 107069174 G A RGPD3 Missense_Mutation p.S205L 0.20 tolerated(0.12) benign(0.214) TCGA-DX-A6Z0-01 2 210597614 210597614 A T MAP2 3'UTR 0.07 TCGA-DX-A6Z0-01 2 234072418 234072418 G A INPP5D Missense_Mutation p.D424N 0.15 deleterious(0) possibly_damaging(0.867) TCGA-DX-A6Z0-01 2 89156778 89156778 C A IGKC 3'UTR 0.50 TCGA-DX-A6Z0-01 3 113665078 113665081 GACA - GRAMD1C 3'UTR 0.17 TCGA-DX-A6Z0-01 3 14960294 14960294 G T FGD5 Missense_Mutation p.A1175S 0.68 tolerated(0.16) probably_damaging(0.994) TCGA-DX-A6Z0-01 3 17413737 17413737 C T TBC1D5 Silent p.G275G 0.07 TCGA-DX-A6Z0-01 3 48622990 48622990 C T COL7A1 Silent p.R1298R 0.15 TCGA-DX-A6Z0-01 4 36212251 36212251 T G ARAP2 Silent p.S416S 0.19 TCGA-DX-A6Z0-01 4 44176380 44176380 T C KCTD8 3'UTR 0.42 TCGA-DX-A6Z0-01 5 140432388 140432388 G A PCDHB1 Missense_Mutation p.V445I 0.37 tolerated(0.38) benign(0.002) TCGA-DX-A6Z0-01 5 140536443 140536443 C A PCDHB17 Silent p.I289I 0.33 TCGA-DX-A6Z0-01 5 157065660 157065660 C A SOX30 Missense_Mutation p.Q486H 0.18 deleterious(0.02) probably_damaging(0.962) TCGA-DX-A6Z0-01 6 32134340 32134340 C T EGFL8 Missense_Mutation p.P56L 0.47 deleterious(0) possibly_damaging(0.846) TCGA-DX-A6Z0-01 6 47200704 47200704 C T TNFRSF21 Missense_Mutation p.V589I 0.60 deleterious(0) probably_damaging(0.967) TCGA-DX-A6Z0-01 7 103183203 103183203 G A RELN Nonsense_Mutation p.R2216* 0.30 TCGA-DX-A6Z0-01 7 11633081 11633081 G T THSD7A Silent p.I357I 0.14 TCGA-DX-A6Z0-01 7 150174830 150174830 G A GIMAP8 Missense_Mutation p.E654K 0.39 tolerated(0.95) benign(0) TCGA-DX-A6Z0-01 7 151945170 151945170 G A KMT2C Silent p.S783S 0.06 TCGA-DX-A6Z0-01 7 32109993 32109993 T C PDE1C Intron 0.26 TCGA-DX-A6Z0-01 7 45077851 45077851 G A CCM2 Splice_Site p.X32_splice 0.07 TCGA-DX-A6Z0-01 7 6732294 6732294 C T ZNF12 Silent p.Q93Q 0.09 TCGA-DX-A6Z0-01 7 92234436 92234436 C A CDK6 3'UTR 0.11 TCGA-DX-A6Z0-01 8 23538941 23538941 G A NKX3-1 Silent p.T166T 0.09 TCGA-DX-A6Z0-01 9 119204815 119204815 A G ASTN2 Missense_Mutation p.V1121A 0.10 deleterious(0) unknown(0) TCGA-DX-A6Z0-01 9 71080114 71080114 C A PGM5 Missense_Mutation p.S383R 0.38 deleterious(0) probably_damaging(0.965) TCGA-DX-A6Z0-01 9 71437582 71437583 - A PIP5K1B Frame_Shift_Ins p.T20Nfs*3 0.29 TCGA-DX-A6Z0-01 X 107417686 107417686 C A COL4A6 Missense_Mutation p.G1042V 0.06 probably_damaging(1) TCGA-DX-A6Z0-01 X 150840783 150840783 G C PASD1 Missense_Mutation p.Q522H 0.29 deleterious_low_confidence(0.03) benign(0.387) TCGA-DX-A6Z0-01 X 22291373 22291373 G A ZNF645 Missense_Mutation p.G89R 0.14 deleterious(0.02) benign(0.12) TCGA-DX-A6Z0-01 X 34149507 34149507 G A FAM47A Missense_Mutation p.P297S 0.15 tolerated(0.12) possibly_damaging(0.803) TCGA-DX-A6Z0-01 X 71694332 71694332 A T HDAC8 Intron 0.67 TCGA-DX-A6Z2-01 10 52066985 52066985 G C SGMS1 Missense_Mutation p.R387G 0.47 tolerated(0.34) possibly_damaging(0.566) TCGA-DX-A6Z2-01 11 10527727 10527727 G T AMPD3 3'UTR 0.14 TCGA-DX-A6Z2-01 11 124252937 124252937 C G OR8B2 Silent p.L101L 0.06 TCGA-DX-A6Z2-01 11 56409135 56409135 T A OR5AP2 Missense_Mutation p.I261F 0.38 deleterious(0.01) probably_damaging(0.949) TCGA-DX-A6Z2-01 11 66322046 66322046 G A CTD-3074O7.2 3'Flank 0.15 TCGA-DX-A6Z2-01 11 70184503 70184503 A T PPFIA1 Missense_Mutation p.E505D 0.48 tolerated(0.28) benign(0.006) TCGA-DX-A6Z2-01 12 122966188 122966188 C G ZCCHC8 Missense_Mutation p.G300A 0.34 deleterious(0) possibly_damaging(0.543) TCGA-DX-A6Z2-01 12 125396494 125396494 C T UBC Silent p.G608G 0.46 TCGA-DX-A6Z2-01 12 129153983 129153983 G A TMEM132C Missense_Mutation p.A443T 0.36 deleterious(0) probably_damaging(0.999) TCGA-DX-A6Z2-01 12 45741992 45741992 A G ANO6 Missense_Mutation p.K197R 0.38 tolerated(0.42) possibly_damaging(0.573) TCGA-DX-A6Z2-01 12 49948282 49948282 G A KCNH3 Missense_Mutation p.R694H 0.09 tolerated(0.14) benign(0) TCGA-DX-A6Z2-01 13 48941691 48941691 G T RB1 Missense_Mutation p.R334I 0.54 deleterious(0.04) probably_damaging(0.996) TCGA-DX-A6Z2-01 13 95363979 95363979 G T SOX21 Missense_Mutation p.P109T 0.31 tolerated(0.33) benign(0.008) TCGA-DX-A6Z2-01 13 96085946 96085946 C A CLDN10 5'UTR 0.31 TCGA-DX-A6Z2-01 14 103369714 103369714 G A TRAF3 Silent p.V361V 0.68 TCGA-DX-A6Z2-01 14 106236839 106236839 G C IGHG3 Missense_Mutation p.P124A 0.57 tolerated(0.87) benign(0) TCGA-DX-A6Z2-01 14 21058865 21058865 T A RNASE12 Silent p.I6I 0.32 TCGA-DX-A6Z2-01 14 54420089 54420089 G C BMP4 5'UTR 0.62 TCGA-DX-A6Z2-01 14 80327536 80327536 G A NRXN3 Intron 0.55 TCGA-DX-A6Z2-01 15 40916633 40916633 C G CASC5 Missense_Mutation p.L1417V 0.21 tolerated(0.32) benign(0.015) TCGA-DX-A6Z2-01 15 41769421 41769421 A T RTF1 Missense_Mutation p.N540I 0.26 tolerated(0.07) possibly_damaging(0.804) TCGA-DX-A6Z2-01 15 43585021 43585021 C T TGM7 Missense_Mutation p.A109T 0.39 tolerated(0.09) possibly_damaging(0.825) TCGA-DX-A6Z2-01 15 79324514 79324514 T A RASGRF1 Missense_Mutation p.D368V 0.52 tolerated(0.21) benign(0.037) TCGA-DX-A6Z2-01 16 23388519 23388519 C T SCNN1B Missense_Mutation p.A435V 0.16 tolerated(0.34) benign(0.009) TCGA-DX-A6Z2-01 16 32893375 32893375 C A RP11-989E6.3 5'Flank 0.42 TCGA-DX-A6Z2-01 16 58592426 58592426 A C CNOT1 Missense_Mutation p.N761K 0.33 tolerated(0.96) benign(0.035) TCGA-DX-A6Z2-01 17 3526659 3526659 C T SHPK Silent p.T207T 0.07 TCGA-DX-A6Z2-01 17 36881066 36881066 C - MLLT6 Frame_Shift_Del p.L1027* 0.40 TCGA-DX-A6Z2-01 17 62122801 62122801 C T ERN1 Silent p.P857P 0.20 TCGA-DX-A6Z2-01 17 66339909 66339909 C T ARSG Missense_Mutation p.A128V 0.39 deleterious(0.05) possibly_damaging(0.871) TCGA-DX-A6Z2-01 17 7573976 7573976 T C TP53 Missense_Mutation p.K351E 0.62 tolerated(0.2) possibly_damaging(0.734) TCGA-DX-A6Z2-01 19 14910726 14910726 A T OR7C1 Missense_Mutation p.S75T 0.38 tolerated_low_confidence(0.12) benign(0.176) TCGA-DX-A6Z2-01 19 49513277 49513277 G C RUVBL2 Missense_Mutation p.G206A 0.57 deleterious(0) probably_damaging(0.999) TCGA-DX-A6Z2-01 1 16302618 16302618 T A ZBTB17 5'UTR 0.52 TCGA-DX-A6Z2-01 1 180062224 180062233 GTTGAAAGAG - CEP350 Frame_Shift_Del p.M2328Ifs*8 0.30 TCGA-DX-A6Z2-01 1 20416375 20416375 C T PLA2G5 Silent p.G93G 0.28 TCGA-DX-A6Z2-01 1 215749265 215749265 G T KCTD3 Missense_Mutation p.A69S 0.36 tolerated(0.3) benign(0.307) TCGA-DX-A6Z2-01 1 21890674 21890674 G A ALPL Missense_Mutation p.A205T 0.23 deleterious(0.02) benign(0.328) TCGA-DX-A6Z2-01 1 237044109 237044109 C - MTR Frame_Shift_Del p.L884Wfs*14 0.25 TCGA-DX-A6Z2-01 1 25167316 25167316 T C CLIC4 Missense_Mutation p.I217T 0.42 deleterious(0.03) possibly_damaging(0.551) TCGA-DX-A6Z2-01 1 46978438 46978438 C G DMBX1 3'UTR 0.33 TCGA-DX-A6Z2-01 1 52704639 52704639 C T ZFYVE9 Missense_Mutation p.S517L 0.24 tolerated_low_confidence(0.07) benign(0.066) TCGA-DX-A6Z2-01 20 56826874 56826874 C T PPP4R1L Missense_Mutation p.R18H 0.38 tolerated(0.25) benign(0.031) TCGA-DX-A6Z2-01 20 60908645 60908645 C T LAMA5 Missense_Mutation p.R999H 0.22 benign(0.06) TCGA-DX-A6Z2-01 21 44949799 44949799 C A HSF2BP Missense_Mutation p.Q280H 0.22 deleterious(0) probably_damaging(0.977) TCGA-DX-A6Z2-01 2 159533343 159533343 A T PKP4 Missense_Mutation p.S1074C 0.38 tolerated(0.07) benign(0.379) TCGA-DX-A6Z2-01 2 169826677 169826677 G A ABCB11 Nonsense_Mutation p.Q563* 0.18 TCGA-DX-A6Z2-01 2 182786788 182786788 A G SSFA2 Silent p.Q1108Q 0.29 TCGA-DX-A6Z2-01 2 198368149 198368149 C T HSPE1 3'UTR 0.18 TCGA-DX-A6Z2-01 2 226447647 226447647 G A NYAP2 Missense_Mutation p.R505Q 0.32 tolerated(0.21) probably_damaging(0.997) TCGA-DX-A6Z2-01 2 43520007 43520007 G A THADA Missense_Mutation p.A1595V 0.36 deleterious(0.04) benign(0.078) TCGA-DX-A6Z2-01 2 46842277 46842277 T C PIGF Silent p.L9L 0.41 TCGA-DX-A6Z2-01 2 50850699 50850699 A C NRXN1 Missense_Mutation p.L329W 0.23 deleterious(0.03) probably_damaging(1) TCGA-DX-A6Z2-01 2 5839589 5839589 T A SOX11 3'UTR 0.34 TCGA-DX-A6Z2-01 3 109049327 109049327 T A DPPA4 Intron 0.55 TCGA-DX-A6Z2-01 3 150877791 150877791 C T MED12L Missense_Mutation p.P337L 0.10 tolerated(0.1) benign(0.171) TCGA-DX-A6Z2-01 3 169663318 169663318 G A RP11-379K17.4 RNA 0.67 TCGA-DX-A6Z2-01 3 41723042 41723042 C A ULK4 Missense_Mutation p.D979Y 0.24 deleterious(0) benign(0.163) TCGA-DX-A6Z2-01 3 62248555 62248555 T G PTPRG Missense_Mutation p.I881S 0.26 tolerated(0.16) probably_damaging(0.979) TCGA-DX-A6Z2-01 3 9470544 9470544 C T SETD5 5'UTR 0.09 TCGA-DX-A6Z2-01 4 156273880 156273880 C T MAP9 Nonsense_Mutation p.W563* 0.36 TCGA-DX-A6Z2-01 4 69343294 69343294 T C TMPRSS11E Silent p.F305F 0.28 TCGA-DX-A6Z2-01 4 76568499 76568499 A G G3BP2 3'UTR 0.40 TCGA-DX-A6Z2-01 5 140208853 140208853 G A PCDHA6 Missense_Mutation p.V393I 0.39 tolerated_low_confidence(0.19) benign(0.134) TCGA-DX-A6Z2-01 5 23510049 23510049 G A PRDM9 Missense_Mutation p.A72T 0.05 deleterious_low_confidence(0) benign(0.003) TCGA-DX-A6Z2-01 5 3599817 3599817 C T IRX1 Missense_Mutation p.P252L 0.54 tolerated(0.43) benign(0.103) TCGA-DX-A6Z2-01 5 37348686 37348686 C T NUP155 Missense_Mutation p.G306R 0.38 deleterious(0) probably_damaging(0.993) TCGA-DX-A6Z2-01 5 64976603 64976603 C A SGTB Missense_Mutation p.L166F 0.36 deleterious(0.01) possibly_damaging(0.548) TCGA-DX-A6Z2-01 6 129618898 129618898 G A LAMA2 Silent p.K975K 0.26 TCGA-DX-A6Z2-01 6 159420502 159420502 G A RSPH3 Silent p.C169C 0.07 TCGA-DX-A6Z2-01 6 160169567 160169567 T A WTAP Intron 0.42 TCGA-DX-A6Z2-01 6 47846497 47846497 T C PTCHD4 Missense_Mutation p.I695V 0.50 tolerated(1) benign(0.001) TCGA-DX-A6Z2-01 6 52271727 52271727 C T PAQR8 3'UTR 0.48 TCGA-DX-A6Z2-01 7 121624027 121624028 - T PTPRZ1 Frame_Shift_Ins p.C264Lfs*2 0.14 TCGA-DX-A6Z2-01 7 44621732 44621732 G A TMED4 Missense_Mutation p.T25I 0.41 tolerated(0.43) possibly_damaging(0.507) TCGA-DX-A6Z2-01 7 70163554 70163554 G C AUTS2 Splice_Site p.X231_splice 0.09 TCGA-DX-A6Z2-01 7 73610723 73610723 G A EIF4H 3'UTR 0.16 TCGA-DX-A6Z2-01 7 82545961 82545961 G A PCLO Nonsense_Mutation p.R3781* 0.39 TCGA-DX-A6Z2-01 7 94157518 94157518 G A CASD1 Missense_Mutation p.E139K 0.38 tolerated(0.28) probably_damaging(0.962) TCGA-DX-A6Z2-01 8 92350446 92350446 T C SLC26A7 Silent p.G288G 0.22 TCGA-DX-A6Z2-01 8 92998487 92998487 G C RUNX1T1 Missense_Mutation p.Q393E 0.24 deleterious(0) possibly_damaging(0.798) TCGA-DX-A6Z2-01 9 35108025 35108025 G T FAM214B Missense_Mutation p.P83T 0.32 tolerated_low_confidence(0.17) probably_damaging(0.998) TCGA-DX-A6Z2-01 X 103495090 103495090 G C ESX1 Missense_Mutation p.P347R 0.19 tolerated_low_confidence(0.05) unknown(0) TCGA-DX-A6Z2-01 X 119691849 119691849 T G CUL4B Missense_Mutation p.K219T 0.18 tolerated(0.19) benign(0.113) TCGA-DX-A6Z2-01 X 147018109 147018109 G A FMR1 Missense_Mutation p.E323K 0.32 deleterious(0) benign(0.227) TCGA-DX-A6Z2-01 X 155003891 155003891 G A SPRY3 Missense_Mutation p.G120R 0.42 tolerated(0.49) benign(0.002) TCGA-DX-A6Z2-01 X 24579789 24579789 G A PCYT1B 3'Flank 0.39 TCGA-DX-A6Z2-01 X 44397736 44397736 C G FUNDC1 Missense_Mutation p.G80R 0.31 deleterious(0) probably_damaging(0.992) TCGA-DX-A6Z2-01 X 54475373 54475373 G A FGD1 Missense_Mutation p.R768W 0.06 deleterious(0) probably_damaging(0.997) TCGA-DX-A6Z2-01 X 70711917 70711917 G A Y_RNA 5'Flank 0.08 TCGA-DX-A6Z2-01 X 96185820 96185820 C G DIAPH2 Nonsense_Mutation p.S356* 0.32 TCGA-DX-A7EF-01 10 134980985 134980985 G C KNDC1 Missense_Mutation p.S68T 0.41 deleterious(0.05) possibly_damaging(0.483) TCGA-DX-A7EF-01 10 25891039 25891039 A - GPR158 3'UTR 0.27 TCGA-DX-A7EF-01 10 26463350 26463350 T C MYO3A Missense_Mutation p.V1386A 0.23 tolerated_low_confidence(0.95) benign(0.001) TCGA-DX-A7EF-01 10 75531707 75531707 A G SEC24C 3'UTR 0.31 TCGA-DX-A7EF-01 10 88728453 88728453 T A ADIRF Intron 0.88 TCGA-DX-A7EF-01 11 60704165 60704165 G A TMEM132A Missense_Mutation p.R954Q 0.22 tolerated(0.26) probably_damaging(0.998) TCGA-DX-A7EF-01 11 62288755 62288755 C T AHNAK Missense_Mutation p.M4378I 0.30 benign(0.124) TCGA-DX-A7EF-01 11 63677172 63677172 G T MARK2 3'UTR 0.46 TCGA-DX-A7EF-01 11 85374444 85374444 T A CREBZF 3'UTR 0.33 TCGA-DX-A7EF-01 12 10851826 10851826 A T YBX3 3'UTR 0.08 TCGA-DX-A7EF-01 12 15095485 15095485 G A ARHGDIB Silent p.L193L 0.50 TCGA-DX-A7EF-01 12 19667686 19667686 T A AEBP2 Missense_Mutation p.D483E 0.52 tolerated_low_confidence(0.12) probably_damaging(0.991) TCGA-DX-A7EF-01 12 52867394 52867394 C T KRT6C Missense_Mutation p.G43D 0.09 deleterious(0) unknown(0) TCGA-DX-A7EF-01 15 22851033 22851033 G T TUBGCP5 Missense_Mutation p.R432L 0.21 tolerated(0.08) probably_damaging(0.987) TCGA-DX-A7EF-01 15 41165914 41165914 C T RHOV Missense_Mutation p.V79M 0.50 deleterious(0) benign(0.198) TCGA-DX-A7EF-01 15 65346049 65346049 T C RASL12 3'UTR 0.16 TCGA-DX-A7EF-01 16 18554998 18554998 C G NOMO2 Missense_Mutation p.D226H 0.12 deleterious(0) possibly_damaging(0.864) TCGA-DX-A7EF-01 16 57417378 57417378 A T CX3CL1 3'UTR 0.43 TCGA-DX-A7EF-01 16 81208264 81208264 C T PKD1L2 Missense_Mutation p.V203M 0.31 deleterious_low_confidence(0) benign(0.007) TCGA-DX-A7EF-01 17 12013743 12013743 G A MAP2K4 Missense_Mutation p.D229N 0.31 deleterious(0) probably_damaging(0.999) TCGA-DX-A7EF-01 17 1839011 1839011 A G RTN4RL1 3'UTR 0.21 TCGA-DX-A7EF-01 17 41831293 41831293 C T SOST 3'UTR 0.10 TCGA-DX-A7EF-01 17 47656469 47656469 C A NXPH3 Nonsense_Mutation p.S189* 0.16 TCGA-DX-A7EF-01 17 48617655 48617655 G A EPN3 Silent p.P313P 0.26 TCGA-DX-A7EF-01 17 71382003 71382003 C A SDK2 Missense_Mutation p.V1518L 0.37 tolerated(0.1) probably_damaging(0.992) TCGA-DX-A7EF-01 17 76967850 76967850 G A LGALS3BP Silent p.A522A 0.25 TCGA-DX-A7EF-01 19 37314268 37314268 G C ZNF790 Missense_Mutation p.Q50E 0.54 deleterious(0) benign(0.055) TCGA-DX-A7EF-01 1 110019410 110019410 C T SYPL2 Silent p.I89I 0.30 TCGA-DX-A7EF-01 1 12887523 12887523 C T PRAMEF11 Missense_Mutation p.E112K 0.46 deleterious(0) benign(0.167) TCGA-DX-A7EF-01 1 235331291 235331291 G A ARID4B 3'UTR 0.25 TCGA-DX-A7EF-01 1 59248443 59248443 G A JUN Silent p.P100P 0.10 TCGA-DX-A7EF-01 1 60314110 60314110 G C HOOK1 Missense_Mutation p.M351I 0.23 tolerated(0.06) probably_damaging(0.996) TCGA-DX-A7EF-01 1 94463415 94463415 G T ABCA4 Splice_Site p.X2243_splice 0.25 TCGA-DX-A7EF-01 20 13936777 13936777 G A SEL1L2 Missense_Mutation p.T20I 0.29 tolerated(0.39) benign(0.046) TCGA-DX-A7EF-01 20 61386166 61386166 G A NTSR1 Missense_Mutation p.E282K 0.17 tolerated(0.28) benign(0.008) TCGA-DX-A7EF-01 21 43639357 43639357 C T ABCG1 5'UTR 0.21 TCGA-DX-A7EF-01 22 25331358 25331358 G T TMEM211 Missense_Mutation p.T111N 0.38 deleterious(0.01) possibly_damaging(0.548) TCGA-DX-A7EF-01 22 37603369 37603369 C T SSTR3 Silent p.P158P 0.62 TCGA-DX-A7EF-01 22 40351885 40351885 C T GRAP2 Silent p.P47P 0.70 TCGA-DX-A7EF-01 2 10269400 10269400 A G RRM2 Missense_Mutation p.I413V 0.46 deleterious_low_confidence(0) benign(0.085) TCGA-DX-A7EF-01 2 105484676 105484676 C G LINC01159 RNA 0.52 TCGA-DX-A7EF-01 2 162719573 162719573 G T SLC4A10 Splice_Site p.X256_splice 0.50 TCGA-DX-A7EF-01 2 223806326 223806326 A G ACSL3 Missense_Mutation p.K706R 0.33 tolerated(0.08) possibly_damaging(0.752) TCGA-DX-A7EF-01 2 233735049 233735049 A T C2orf82 5'UTR 0.47 TCGA-DX-A7EF-01 2 238483637 238483637 C A RAB17 3'UTR 0.11 TCGA-DX-A7EF-01 2 44041643 44041643 C T ABCG5 Missense_Mutation p.E579K 0.23 deleterious(0) probably_damaging(0.954) TCGA-DX-A7EF-01 2 73827825 73827825 G A ALMS1 Missense_Mutation p.G3896S 0.85 probably_damaging(0.974) TCGA-DX-A7EF-01 2 88885426 88885426 G A EIF2AK3 Missense_Mutation p.T528M 0.30 deleterious(0.03) probably_damaging(0.981) TCGA-DX-A7EF-01 3 173997210 173997210 G A NLGN1 Silent p.A473A 0.26 TCGA-DX-A7EF-01 3 189612570 189612570 A T TP63 3'UTR 0.21 TCGA-DX-A7EF-01 3 33602411 33602411 T A CLASP2 Missense_Mutation p.D948V 0.08 deleterious(0) possibly_damaging(0.799) TCGA-DX-A7EF-01 3 97868430 97868430 T A OR5H14 Silent p.A67A 0.43 TCGA-DX-A7EF-01 4 100756843 100756843 C T DAPP1 Silent p.D55D 0.43 TCGA-DX-A7EF-01 4 30723421 30723421 T A PCDH7 Missense_Mutation p.L126Q 0.71 deleterious(0) probably_damaging(0.987) TCGA-DX-A7EF-01 5 10261729 10261729 G A CCT5 Missense_Mutation p.E351K 0.19 tolerated(0.07) benign(0.146) TCGA-DX-A7EF-01 5 140231885 140231885 C T PCDHA9 Intron 0.48 TCGA-DX-A7EF-01 5 172342639 172342639 G A ERGIC1 Intron 0.43 TCGA-DX-A7EF-01 6 12294309 12294309 C T EDN1 Silent p.C123C 0.08 TCGA-DX-A7EF-01 6 37247153 37247153 G T TBC1D22B Missense_Mutation p.A63S 0.19 deleterious(0.01) benign(0.146) TCGA-DX-A7EF-01 6 43254804 43254804 G A TTBK1 3'UTR 0.22 TCGA-DX-A7EF-01 6 47594450 47594450 C T CD2AP 3'UTR 0.37 TCGA-DX-A7EF-01 6 70909399 70909399 A C COL19A1 Missense_Mutation p.K1061T 0.11 deleterious(0.01) probably_damaging(0.972) TCGA-DX-A7EF-01 6 97246334 97246334 G A GPR63 3'UTR 0.21 TCGA-DX-A7EF-01 7 100468230 100468230 G T TRIP6 Silent p.G288G 0.86 TCGA-DX-A7EF-01 7 116339237 116339237 C T MET Silent p.S33S 0.54 TCGA-DX-A7EF-01 7 128415802 128415802 T G OPN1SW Missense_Mutation p.I15L 0.26 tolerated(0.19) benign(0.001) TCGA-DX-A7EF-01 7 93605300 93605300 G A AC006378.2 Intron 0.46 TCGA-DX-A7EF-01 8 62289200 62289200 G A CLVS1 Silent p.L164L 0.19 TCGA-DX-A7EF-01 9 135772703 135772703 T C TSC1 Missense_Mutation p.Y948C 0.65 tolerated(0.11) possibly_damaging(0.867) TCGA-DX-A7EF-01 9 15211327 15211327 A T TTC39B Missense_Mutation p.F184Y 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-DX-A7EF-01 X 111090651 111090651 C T TRPC5 Missense_Mutation p.R464H 0.41 tolerated(0.56) benign(0.014) TCGA-DX-A7EF-01 X 114953402 114953402 G A RP1-241P17.4 Nonsense_Mutation p.R50* 0.47 TCGA-DX-A7EF-01 X 64738186 64738186 A G LAS1L Silent p.Y536Y 0.11 TCGA-DX-A7EF-01 X 71932722 71932722 C G PHKA1 Missense_Mutation p.D46H 0.24 deleterious(0) probably_damaging(1) TCGA-DX-A7EF-01 X 73961334 73961334 C A KIAA2022 Missense_Mutation p.D1020Y 0.18 deleterious(0) possibly_damaging(0.83) TCGA-DX-A7EI-01 11 30033192 30033192 C A KCNA4 Missense_Mutation p.G345V 0.89 tolerated(0.11) possibly_damaging(0.617) TCGA-DX-A7EI-01 11 83167105 83167105 A - DLG2 3'Flank 0.16 TCGA-DX-A7EI-01 12 18439811 18439811 G T PIK3C2G Missense_Mutation p.V237L 0.54 deleterious(0.03) benign(0.005) TCGA-DX-A7EI-01 12 58022875 58022875 G A B4GALNT1 Missense_Mutation p.P256L 0.17 deleterious(0.03) benign(0.058) TCGA-DX-A7EI-01 12 78604790 78604790 C G NAV3 3'Flank 0.43 TCGA-DX-A7EI-01 12 78605235 78605235 C G NAV3 3'Flank 0.42 TCGA-DX-A7EI-01 12 78605245 78605245 C G NAV3 3'Flank 0.40 TCGA-DX-A7EI-01 13 102367988 102367988 G A ITGBL1 Missense_Mutation p.G490D 0.54 deleterious_low_confidence(0) possibly_damaging(0.767) TCGA-DX-A7EI-01 15 65450174 65450174 T C CLPX Missense_Mutation p.T323A 0.56 deleterious(0) probably_damaging(1) TCGA-DX-A7EI-01 15 88420161 88420161 C A NTRK3 3'UTR 0.20 TCGA-DX-A7EI-01 16 8857959 8857959 C T ABAT Silent p.L134L 0.41 TCGA-DX-A7EI-01 17 27076468 27076468 A G TRAF4 Missense_Mutation p.E429G 1.00 tolerated(0.23) possibly_damaging(0.831) TCGA-DX-A7EI-01 17 36922085 36922085 A T PIP4K2B 3'UTR 0.94 TCGA-DX-A7EI-01 17 78313806 78313806 G A RNF213 Missense_Mutation p.R1880H 0.94 probably_damaging(0.999) TCGA-DX-A7EI-01 18 44159694 44159694 C T LOXHD1 Missense_Mutation p.D570N 0.63 deleterious(0.02) benign(0) TCGA-DX-A7EI-01 18 67995648 67995648 C G SOCS6 3'UTR 0.53 TCGA-DX-A7EI-01 19 36297635 36297635 C T PRODH2 Nonsense_Mutation p.W335* 0.11 TCGA-DX-A7EI-01 19 36297654 36297654 C T PRODH2 Missense_Mutation p.A329T 0.11 tolerated(0.13) possibly_damaging(0.601) TCGA-DX-A7EI-01 19 36486656 36486656 G A SDHAF1 3'UTR 0.39 TCGA-DX-A7EI-01 19 36487183 36487183 G A SDHAF1 3'UTR 0.42 TCGA-DX-A7EI-01 19 54844969 54844969 C T LILRA4 Silent p.L458L 0.50 TCGA-DX-A7EI-01 19 8973577 8973577 A G MUC16 Missense_Mutation p.F14247L 0.05 probably_damaging(0.991) TCGA-DX-A7EI-01 1 13695804 13695804 A T PRAMEF19 Missense_Mutation p.N387K 0.23 probably_damaging(0.998) TCGA-DX-A7EI-01 1 150923561 150923561 G T SETDB1 Silent p.R736R 0.11 TCGA-DX-A7EI-01 1 153924094 153924094 T C CRTC2 Missense_Mutation p.N349S 0.47 tolerated(0.07) probably_damaging(0.952) TCGA-DX-A7EI-01 1 173526547 173526547 C T SLC9C2 Missense_Mutation p.V383I 0.30 tolerated(0.24) benign(0.032) TCGA-DX-A7EI-01 1 202146847 202146847 C T PTPRVP RNA 0.24 TCGA-DX-A7EI-01 1 207271592 207271592 G C C4BPB Missense_Mutation p.E201Q 0.64 tolerated(0.52) benign(0.008) TCGA-DX-A7EI-01 1 213186627 213186627 G T ANGEL2 Missense_Mutation p.P65T 0.41 tolerated_low_confidence(0.06) possibly_damaging(0.656) TCGA-DX-A7EI-01 1 225539462 225539462 C G DNAH14 Missense_Mutation p.L2908V 0.11 tolerated(0.27) possibly_damaging(0.636) TCGA-DX-A7EI-01 1 246810848 246810848 G C CNST Missense_Mutation p.E449Q 0.19 tolerated(0.08) possibly_damaging(0.818) TCGA-DX-A7EI-01 1 247242005 247242005 G T ZNF670 5'UTR 0.17 TCGA-DX-A7EI-01 1 247242019 247242019 G A ZNF670 5'UTR 0.16 TCGA-DX-A7EI-01 20 32438798 32438798 G C CHMP4B Missense_Mutation p.D137H 0.16 deleterious(0) possibly_damaging(0.722) TCGA-DX-A7EI-01 20 39831162 39831162 C T ZHX3 Missense_Mutation p.A799T 0.07 tolerated(0.67) benign(0.009) TCGA-DX-A7EI-01 2 127453545 127453545 G A GYPC Missense_Mutation p.V72I 0.65 tolerated(0.31) benign(0.109) TCGA-DX-A7EI-01 2 130951829 130951829 C T TUBA3E Missense_Mutation p.E196K 0.52 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-DX-A7EI-01 2 131878368 131878368 A G PLEKHB2 Intron 0.41 TCGA-DX-A7EI-01 2 186671704 186671704 C T FSIP2 Missense_Mutation p.P5980S 0.08 benign(0.282) TCGA-DX-A7EI-01 2 55184997 55184997 C T EML6 Silent p.D1519D 0.18 TCGA-DX-A7EI-01 2 9545025 9545025 A T ITGB1BP1 3'UTR 0.07 TCGA-DX-A7EI-01 3 57132322 57132322 G A IL17RD Missense_Mutation p.A470V 0.22 tolerated(0.14) benign(0.237) TCGA-DX-A7EI-01 4 115544435 115544435 C A UGT8 Missense_Mutation p.D133E 0.10 deleterious(0) probably_damaging(0.999) TCGA-DX-A7EI-01 4 123145709 123145709 C G KIAA1109 Silent p.L890L 0.60 TCGA-DX-A7EI-01 4 49005809 49005809 G C CWH43 Missense_Mutation p.G287A 0.94 deleterious(0) probably_damaging(1) TCGA-DX-A7EI-01 5 112175084 112175084 G T APC Nonsense_Mutation p.E1265* 0.91 TCGA-DX-A7EI-01 5 170632550 170632550 G C RANBP17 Missense_Mutation p.R722T 0.16 deleterious(0) probably_damaging(0.977) TCGA-DX-A7EI-01 5 176734831 176734831 G A MXD3 Silent p.D152D 0.30 TCGA-DX-A7EI-01 6 46518104 46518104 C T CYP39A1 Silent p.%3D 0.88 TCGA-DX-A7EI-01 7 71252060 71252060 G T CALN1 3'UTR 0.55 TCGA-DX-A7EI-01 7 92985322 92985322 T G CCDC132 Missense_Mutation p.F902C 0.60 deleterious(0) probably_damaging(0.969) TCGA-DX-A7EI-01 9 84609274 84609274 G A SPATA31D1 Missense_Mutation p.V1297M 0.54 tolerated(0.27) benign(0.005) TCGA-DX-A7EI-01 X 135128080 135128080 A G SLC9A6 3'UTR 0.30 TCGA-DX-A7EI-01 X 153587439 153587439 C G FLNA Missense_Mutation p.V1463L 0.28 deleterious(0.01) benign(0.162) TCGA-DX-A7EI-01 X 3236006 3236006 C G MXRA5 Missense_Mutation p.E1906Q 0.19 tolerated(0.05) possibly_damaging(0.764) TCGA-DX-A7EL-01 10 102744515 102744515 T A SEMA4G 3'UTR 0.29 TCGA-DX-A7EL-01 10 70451888 70451889 AA - TET1 3'UTR 0.18 TCGA-DX-A7EL-01 11 113711441 113711441 T G USP28 Missense_Mutation p.K138T 0.31 deleterious(0) probably_damaging(0.915) TCGA-DX-A7EL-01 11 117064673 117064673 C T SIDT2 Silent p.T772T 0.53 TCGA-DX-A7EL-01 11 125472725 125472725 A C STT3A Missense_Mutation p.Y100S 0.19 deleterious(0) probably_damaging(0.931) TCGA-DX-A7EL-01 11 16119196 16119196 C A SOX6 Missense_Mutation p.A313S 0.19 tolerated(0.11) probably_damaging(0.999) TCGA-DX-A7EL-01 11 2417894 2417894 G C CD81 Missense_Mutation p.G200R 0.28 tolerated(0.09) possibly_damaging(0.564) TCGA-DX-A7EL-01 11 6340448 6340448 G A PRKCDBP Missense_Mutation p.P244L 0.17 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-DX-A7EL-01 11 6739019 6739019 T C GVINP1 RNA 0.30 TCGA-DX-A7EL-01 12 102792957 102792957 C T IGF1 3'UTR 0.11 TCGA-DX-A7EL-01 12 122710615 122710615 G A DIABLO 5'UTR 0.43 TCGA-DX-A7EL-01 12 133803696 133803696 A G ANHX Missense_Mutation p.Y182H 0.46 deleterious(0) possibly_damaging(0.574) TCGA-DX-A7EL-01 14 45633722 45633722 G C FANCM Missense_Mutation p.R581P 0.22 deleterious(0) probably_damaging(0.998) TCGA-DX-A7EL-01 15 102294602 102294602 C T DNM1P47 RNA 0.12 TCGA-DX-A7EL-01 15 27182400 27182400 G C GABRA5 Missense_Mutation p.E217Q 0.06 tolerated(0.41) probably_damaging(0.927) TCGA-DX-A7EL-01 15 44811494 44811494 G T CTDSPL2 Splice_Site p.X413_splice 0.34 TCGA-DX-A7EL-01 16 3026874 3026874 C T PKMYT1 Missense_Mutation p.A57T 0.09 tolerated(0.22) benign(0.017) TCGA-DX-A7EL-01 17 12906831 12906832 CA - ELAC2 Frame_Shift_Del p.V348Afs*16 0.34 TCGA-DX-A7EL-01 17 15215789 15215789 C T TEKT3 Silent p.V296V 0.17 TCGA-DX-A7EL-01 17 40695606 40695606 A G NAGLU Missense_Mutation p.S528G 0.17 tolerated(0.39) benign(0.008) TCGA-DX-A7EL-01 19 16024597 16024597 C T CYP4F11 Missense_Mutation p.R507H 0.32 deleterious(0.01) probably_damaging(0.924) TCGA-DX-A7EL-01 19 619638 619638 C G POLRMT Missense_Mutation p.G1005A 0.04 deleterious(0.01) probably_damaging(1) TCGA-DX-A7EL-01 1 158576852 158576852 G A OR10Z1 Silent p.L208L 0.17 TCGA-DX-A7EL-01 1 2460670 2460670 C A HES5 3'UTR 0.07 TCGA-DX-A7EL-01 1 33238931 33238931 G A KIAA1522 3'UTR 0.22 TCGA-DX-A7EL-01 1 37267481 37267481 T G GRIK3 Missense_Mutation p.S911R 0.25 deleterious_low_confidence(0.02) benign(0.015) TCGA-DX-A7EL-01 1 59041881 59041898 CTCCCCCAGTTCCTTGAT - TACSTD2 In_Frame_Del p.I311_E316del 0.21 TCGA-DX-A7EL-01 1 92470012 92470012 C G BRDT Silent p.G810G 0.07 TCGA-DX-A7EL-01 1 99357913 99357913 A T LPPR5 3'UTR 0.32 TCGA-DX-A7EL-01 21 37741363 37741363 C - MORC3 Frame_Shift_Del p.S566* 0.10 TCGA-DX-A7EL-01 22 21336825 21336825 G C LZTR1 Silent p.R55R 0.24 TCGA-DX-A7EL-01 22 36894076 36894076 C G FOXRED2 Missense_Mutation p.Q448H 0.30 deleterious(0.02) possibly_damaging(0.85) TCGA-DX-A7EL-01 22 39222586 39222586 G A NPTXR Silent p.S339S 0.22 TCGA-DX-A7EL-01 22 50558966 50558966 A G MOV10L1 Missense_Mutation p.Q497R 0.30 tolerated(0.09) benign(0.14) TCGA-DX-A7EL-01 2 113676368 113676368 C A IL37 Silent p.P213P 0.38 TCGA-DX-A7EL-01 2 167263047 167263047 C T SCN7A Silent p.K1364K 0.38 TCGA-DX-A7EL-01 2 187370520 187370520 T C ZC3H15 Silent p.D306D 0.38 TCGA-DX-A7EL-01 2 27167529 27167529 A G DPYSL5 Silent p.L482L 0.27 TCGA-DX-A7EL-01 2 27822468 27822468 C G ZNF512 Missense_Mutation p.A99G 0.20 tolerated_low_confidence(0.45) benign(0.011) TCGA-DX-A7EL-01 2 60684821 60684821 C T BCL11A 3'UTR 0.17 TCGA-DX-A7EL-01 2 62991458 62991458 G A EHBP1 Missense_Mutation p.V74I 0.06 deleterious(0) probably_damaging(0.996) TCGA-DX-A7EL-01 3 121413302 121413302 T A GOLGB1 Missense_Mutation p.Q2023L 0.64 probably_damaging(0.999) TCGA-DX-A7EL-01 3 13611824 13611824 G C FBLN2 5'UTR 0.23 TCGA-DX-A7EL-01 3 147124340 147124340 A C ZIC4 5'Flank 0.11 TCGA-DX-A7EL-01 4 148876500 148876500 A T ARHGAP10 Missense_Mutation p.L475F 0.11 tolerated(0.13) probably_damaging(0.998) TCGA-DX-A7EL-01 4 176555126 176555126 G A GPM6A 3'UTR 0.10 TCGA-DX-A7EL-01 5 118533525 118533525 G A DMXL1 Missense_Mutation p.R2540Q 0.18 deleterious(0.03) benign(0.053) TCGA-DX-A7EL-01 5 134050773 134050773 A T SEC24A Missense_Mutation p.Q929H 0.42 deleterious(0.02) possibly_damaging(0.817) TCGA-DX-A7EL-01 5 156820085 156820085 G A CYFIP2 3'UTR 0.22 TCGA-DX-A7EL-01 5 178459892 178459892 C A ZNF879 Missense_Mutation p.P315T 0.21 tolerated(0.15) probably_damaging(0.999) TCGA-DX-A7EL-01 5 180166884 180166884 T A OR2Y1 Missense_Mutation p.M59L 0.11 deleterious(0) benign(0.391) TCGA-DX-A7EL-01 6 132031121 132031121 T C CTAGE9 Missense_Mutation p.D346G 0.18 tolerated(0.08) benign(0.2) TCGA-DX-A7EL-01 6 132185704 132185704 G A ENPP1 Missense_Mutation p.D362N 0.27 tolerated(0.54) benign(0.41) TCGA-DX-A7EL-01 6 163483279 163483279 G T PACRG Missense_Mutation p.G130V 0.24 deleterious(0) probably_damaging(0.999) TCGA-DX-A7EL-01 6 33156189 33156189 G C COL11A2 Missense_Mutation p.H186D 0.34 benign(0.21) TCGA-DX-A7EL-01 6 33646250 33646250 A G ITPR3 Missense_Mutation p.K1234R 0.40 tolerated(0.07) possibly_damaging(0.842) TCGA-DX-A7EL-01 7 1538144 1538144 C A INTS1 Missense_Mutation p.K443N 0.10 tolerated(0.12) possibly_damaging(0.453) TCGA-DX-A7EL-01 7 40277290 40277290 G A SUGCT Missense_Mutation p.A188T 0.12 deleterious(0) possibly_damaging(0.905) TCGA-DX-A7EL-01 7 65705480 65705480 A T TPST1 Missense_Mutation p.Y23F 0.07 tolerated_low_confidence(0.11) benign(0.412) TCGA-DX-A7EL-01 7 92761639 92761639 A G SAMD9L Missense_Mutation p.F1216L 0.06 tolerated(0.46) benign(0.003) TCGA-DX-A7EL-01 9 132580862 132580862 C T TOR1A Missense_Mutation p.E229K 0.30 deleterious(0.04) possibly_damaging(0.725) TCGA-DX-A7EL-01 X 138808762 138808762 C T ATP11C 3'UTR 0.29 TCGA-DX-A7EL-01 X 152226919 152226919 G T PNMA3 3'UTR 0.46 TCGA-DX-A7EL-01 X 48125797 48125797 G T SSX1 Missense_Mutation p.S181I 0.37 deleterious(0) probably_damaging(0.963) TCGA-DX-A7EL-01 X 48651599 48651599 T C GATA1 Silent p.G255G 0.15 TCGA-DX-A7EL-01 X 72901395 72901395 G A CHIC1 3'UTR 0.23 TCGA-DX-A7EM-01 10 16942707 16942707 G T CUBN Missense_Mutation p.S2776Y 0.43 tolerated(0.07) probably_damaging(0.998) TCGA-DX-A7EM-01 10 55581545 55581545 G A PCDH15 3'UTR 0.28 TCGA-DX-A7EM-01 11 111369380 111369380 G C BTG4 Missense_Mutation p.T41R 0.13 tolerated(0.19) benign(0.117) TCGA-DX-A7EM-01 11 117298508 117298508 C T DSCAML1 3'UTR 0.07 TCGA-DX-A7EM-01 11 36615530 36615530 A T RAG2 Silent p.S63S 0.53 TCGA-DX-A7EM-01 11 60172032 60172032 T G MS4A14 Intron 0.13 TCGA-DX-A7EM-01 11 64695300 64695300 G A PPP2R5B Silent p.L141L 0.27 TCGA-DX-A7EM-01 11 65788571 65788571 A C CATSPER1 Missense_Mutation p.C593G 0.51 deleterious(0) probably_damaging(0.99) TCGA-DX-A7EM-01 12 111798689 111798689 C T FAM109A 3'UTR 0.22 TCGA-DX-A7EM-01 12 49224454 49224454 C T DDX23 Missense_Mutation p.R754H 0.12 deleterious(0) probably_damaging(0.998) TCGA-DX-A7EM-01 12 53911055 53911055 G T ATF7 Missense_Mutation p.L440I 0.20 tolerated(0.07) possibly_damaging(0.708) TCGA-DX-A7EM-01 12 54577521 54577521 G A SMUG1 Silent p.Y68Y 0.36 TCGA-DX-A7EM-01 12 77440013 77440013 G A E2F7 Missense_Mutation p.R212W 0.38 deleterious(0.01) benign(0.064) TCGA-DX-A7EM-01 13 49037932 49037933 TG - RB1 Frame_Shift_Del p.V725Nfs*25 0.20 TCGA-DX-A7EM-01 13 49037972 49037972 G A RB1 Splice_Site p.X737_splice 0.56 TCGA-DX-A7EM-01 14 104202499 104202499 C T PPP1R13B Silent p.A1024A 0.39 TCGA-DX-A7EM-01 14 105678473 105678473 C T BRF1 Missense_Mutation p.A601T 0.28 tolerated(0.22) benign(0.006) TCGA-DX-A7EM-01 14 45695966 45695966 A G MIS18BP1 Missense_Mutation p.I607T 0.07 tolerated(0.16) benign(0.032) TCGA-DX-A7EM-01 14 74826636 74826636 C T VRTN 3'UTR 0.19 TCGA-DX-A7EM-01 14 98099864 98099864 A T RP11-76E12.1 RNA 0.17 TCGA-DX-A7EM-01 15 48595233 48595233 G T SLC12A1 3'UTR 0.19 TCGA-DX-A7EM-01 15 55965592 55965592 G A PRTG Missense_Mutation p.T610M 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-DX-A7EM-01 15 82533687 82533687 G A EFTUD1 Missense_Mutation p.S101L 0.54 deleterious(0) probably_damaging(0.969) TCGA-DX-A7EM-01 16 21716518 21716518 G A OTOA Missense_Mutation p.D337N 0.09 tolerated(0.29) benign(0.047) TCGA-DX-A7EM-01 16 30582409 30582409 T C ZNF688 Missense_Mutation p.M78V 0.25 tolerated(1) benign(0.017) TCGA-DX-A7EM-01 16 55559549 55559549 G T LPCAT2 Missense_Mutation p.G101C 0.43 deleterious(0.03) possibly_damaging(0.664) TCGA-DX-A7EM-01 16 55559550 55559550 G T LPCAT2 Missense_Mutation p.G101V 0.43 tolerated(0.17) benign(0.04) TCGA-DX-A7EM-01 16 88494675 88494675 G A ZNF469 Missense_Mutation p.G266D 0.07 benign(0) TCGA-DX-A7EM-01 17 11833231 11833231 G C DNAH9 Missense_Mutation p.E3976Q 0.10 benign(0.392) TCGA-DX-A7EM-01 17 17397779 17397779 A G RASD1 3'UTR 0.21 TCGA-DX-A7EM-01 17 26939424 26939424 C G RP11-192H23.4 Intron 0.19 TCGA-DX-A7EM-01 17 38337913 38337913 C A RAPGEFL1 5'UTR 0.12 TCGA-DX-A7EM-01 17 42113070 42113070 G A LSM12 3'UTR 0.25 TCGA-DX-A7EM-01 17 44060683 44060683 G A MAPT Silent p.S171S 0.23 TCGA-DX-A7EM-01 17 45789140 45789140 T C TBKBP1 3'UTR 0.13 TCGA-DX-A7EM-01 17 47869337 47869337 A C KAT7 Silent p.T35T 0.23 TCGA-DX-A7EM-01 17 6930944 6930944 C T BCL6B 3'UTR 0.36 TCGA-DX-A7EM-01 17 78073483 78073483 G A CCDC40 Missense_Mutation p.R1113H 0.29 tolerated(1) benign(0.005) TCGA-DX-A7EM-01 17 80919003 80919003 C T B3GNTL1 Missense_Mutation p.V219I 0.24 tolerated(0.32) benign(0.01) TCGA-DX-A7EM-01 19 44423116 44423116 T A ZNF45 Splice_Site p.X48_splice 0.13 TCGA-DX-A7EM-01 19 47507794 47507794 T C ARHGAP35 3'UTR 0.27 TCGA-DX-A7EM-01 19 9087836 9087836 T C MUC16 Missense_Mutation p.T1327A 0.14 unknown(0) TCGA-DX-A7EM-01 1 158576590 158576590 A G OR10Z1 Missense_Mutation p.D121G 0.08 deleterious(0) possibly_damaging(0.672) TCGA-DX-A7EM-01 1 177250848 177250848 G A BRINP2 3'UTR 0.21 TCGA-DX-A7EM-01 1 223718162 223718162 G A CAPN8 Silent p.H606H 0.24 TCGA-DX-A7EM-01 1 237758859 237758859 C T RYR2 Missense_Mutation p.R1500C 0.24 probably_damaging(0.98) TCGA-DX-A7EM-01 1 240371290 240371290 G A FMN2 Missense_Mutation p.G1060R 0.11 unknown(0) TCGA-DX-A7EM-01 1 248005032 248005032 T C OR11L1 Missense_Mutation p.H56R 0.28 deleterious(0.05) benign(0.006) TCGA-DX-A7EM-01 1 47400674 47400674 G C CYP4A11 Missense_Mutation p.T263R 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-DX-A7EM-01 1 93730316 93730316 C T CCDC18 Missense_Mutation p.S1301F 0.21 tolerated(0.08) benign(0.019) TCGA-DX-A7EM-01 1 94497568 94497568 G A ABCA4 Silent p.N1298N 0.60 TCGA-DX-A7EM-01 20 42908986 42908986 A G GDAP1L1 3'UTR 0.34 TCGA-DX-A7EM-01 20 57829998 57829998 G T ZNF831 3'UTR 0.22 TCGA-DX-A7EM-01 21 37518768 37518768 A T CBR3 Silent p.P264P 0.17 TCGA-DX-A7EM-01 21 38461127 38461127 A G TTC3 Missense_Mutation p.K123E 0.28 tolerated(0.15) benign(0.281) TCGA-DX-A7EM-01 22 24940035 24940035 C T GUCD1 Missense_Mutation p.D135N 0.22 deleterious(0.01) probably_damaging(0.966) TCGA-DX-A7EM-01 2 160604560 160604560 C G MARCH7 Missense_Mutation p.I253M 0.28 tolerated(0.17) benign(0.104) TCGA-DX-A7EM-01 2 166854568 166854568 A T SCN1A Missense_Mutation p.F1486I 0.70 deleterious(0) benign(0.236) TCGA-DX-A7EM-01 2 187529902 187529902 A C ITGAV Missense_Mutation p.Q708P 0.11 tolerated(0.07) possibly_damaging(0.612) TCGA-DX-A7EM-01 2 202002362 202002362 G C CFLAR Intron 0.08 TCGA-DX-A7EM-01 2 234959657 234959657 C T SPP2 Missense_Mutation p.A43V 0.23 deleterious(0.01) possibly_damaging(0.52) TCGA-DX-A7EM-01 2 95753091 95753091 G T MRPS5 3'UTR 0.35 TCGA-DX-A7EM-01 3 113325932 113325932 C T SIDT1 Silent p.F483F 0.23 TCGA-DX-A7EM-01 3 119133384 119133384 A T ARHGAP31 Missense_Mutation p.I870F 0.44 tolerated(0.1) benign(0.002) TCGA-DX-A7EM-01 3 194079360 194079360 G A LRRC15 3'UTR 0.71 TCGA-DX-A7EM-01 3 48700023 48700023 C A CELSR3 Silent p.S15S 0.35 TCGA-DX-A7EM-01 3 57132112 57132112 C T IL17RD Missense_Mutation p.R540Q 0.07 tolerated(0.1) possibly_damaging(0.858) TCGA-DX-A7EM-01 3 97806244 97806244 A C OR5AC2 Silent p.S76S 0.14 TCGA-DX-A7EM-01 4 11401252 11401252 C T HS3ST1 Silent p.S126S 0.27 TCGA-DX-A7EM-01 4 183064072 183064072 C T AC108142.1 RNA 0.50 TCGA-DX-A7EM-01 4 76570443 76570443 A C G3BP2 3'UTR 0.24 TCGA-DX-A7EM-01 5 159492027 159492027 C G TTC1 Silent p.G278G 0.64 TCGA-DX-A7EM-01 5 66410167 66410167 A T MAST4 Intron 0.14 TCGA-DX-A7EM-01 5 6755782 6755782 A G PAPD7 3'UTR 0.22 TCGA-DX-A7EM-01 6 139694265 139694265 C G CITED2 3'UTR 0.07 TCGA-DX-A7EM-01 6 159178331 159178331 G A SYTL3 Missense_Mutation p.G409E 0.33 deleterious(0) probably_damaging(0.995) TCGA-DX-A7EM-01 7 138406700 138406700 C T ATP6V0A4 Missense_Mutation p.R694H 0.39 tolerated(0.17) benign(0.274) TCGA-DX-A7EM-01 7 31124408 31124408 C G ADCYAP1R1 Silent p.L165L 0.18 TCGA-DX-A7EM-01 8 19811678 19811678 C T LPL Missense_Mutation p.R197C 0.34 deleterious(0) probably_damaging(0.992) TCGA-DX-A7EM-01 9 111617550 111617550 G A ACTL7B Missense_Mutation p.R221C 0.50 deleterious(0) benign(0.024) TCGA-DX-A7EM-01 9 128434681 128434681 T G MAPKAP1 Missense_Mutation p.N58T 0.33 tolerated(0.53) benign(0.065) TCGA-DX-A7EM-01 9 13408345 13408345 C T RP11-536O18.2 RNA 0.18 TCGA-DX-A7EM-01 9 136270937 136270937 C G C9orf96 3'UTR 0.18 TCGA-DX-A7EM-01 9 139336249 139336249 C G SEC16A Missense_Mutation p.R2344S 0.55 deleterious(0) probably_damaging(0.996) TCGA-DX-A7EM-01 X 153537746 153537746 G T TKTL1 Missense_Mutation p.G101V 0.81 deleterious(0.01) probably_damaging(0.983) TCGA-DX-A7EM-01 X 41555919 41555919 C T GPR34 Nonsense_Mutation p.R345* 0.90 TCGA-DX-A7EM-01 X 84533616 84533616 A G POF1B 3'UTR 0.10 TCGA-DX-A7EN-01 10 12203044 12203044 A G SEC61A2 Missense_Mutation p.Y364C 1.00 deleterious(0) possibly_damaging(0.794) TCGA-DX-A7EN-01 10 99211567 99211567 C T ZDHHC16 Silent p.C45C 0.68 TCGA-DX-A7EN-01 11 103173848 103173848 C G DYNC2H1 Missense_Mutation p.L3715V 0.45 benign(0.018) TCGA-DX-A7EN-01 11 119252394 119252394 C T USP2 5'UTR 0.54 TCGA-DX-A7EN-01 11 128848758 128848758 A G ARHGAP32 Missense_Mutation p.F663L 0.05 deleterious(0.04) probably_damaging(0.986) TCGA-DX-A7EN-01 11 58170846 58170846 G C OR5B3 Missense_Mutation p.L13V 0.38 tolerated_low_confidence(0.25) benign(0.076) TCGA-DX-A7EN-01 12 117672496 117672496 G T NOS1 Missense_Mutation p.H1071N 0.38 deleterious(0) possibly_damaging(0.643) TCGA-DX-A7EN-01 12 4708298 4708298 C T DYRK4 Missense_Mutation p.S222L 0.73 tolerated(0.09) benign(0.109) TCGA-DX-A7EN-01 12 62104092 62104092 T C FAM19A2 3'UTR 0.42 TCGA-DX-A7EN-01 12 88457822 88457822 G A CEP290 Missense_Mutation p.S2069L 0.44 possibly_damaging(0.544) TCGA-DX-A7EN-01 13 49033886 49033886 G T RB1 Nonsense_Mutation p.E675* 0.92 TCGA-DX-A7EN-01 14 62542040 62542040 G A SYT16 Silent p.E308E 0.42 TCGA-DX-A7EN-01 14 88789315 88789315 G A KCNK10 5'UTR 0.50 TCGA-DX-A7EN-01 15 41149197 41149197 C A SPINT1 3'UTR 0.42 TCGA-DX-A7EN-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.46 tolerated(0.13) possibly_damaging(0.631) TCGA-DX-A7EN-01 17 7578242 7578242 C A TP53 Missense_Mutation p.V203L 0.49 deleterious(0.05) benign(0.011) TCGA-DX-A7EN-01 17 76867051 76867051 T C TIMP2 Missense_Mutation p.Y90C 0.61 deleterious(0) benign(0.092) TCGA-DX-A7EN-01 19 17420373 17420373 A T DDA1 5'UTR 0.48 TCGA-DX-A7EN-01 19 32954861 32954861 C G DPY19L3 Nonsense_Mutation p.S511* 0.52 TCGA-DX-A7EN-01 19 8027497 8027497 T C ELAVL1 3'UTR 0.50 TCGA-DX-A7EN-01 1 201060881 201060881 A G CACNA1S Missense_Mutation p.L194P 0.12 deleterious(0) possibly_damaging(0.892) TCGA-DX-A7EN-01 21 43161219 43161219 C T RIPK4 Missense_Mutation p.A712T 0.71 tolerated(0.64) benign(0.012) TCGA-DX-A7EN-01 22 23742153 23742153 G T ZDHHC8P1 RNA 0.56 TCGA-DX-A7EN-01 2 129025587 129025587 C T HS6ST1 3'UTR 0.52 TCGA-DX-A7EN-01 2 129025588 129025588 A G HS6ST1 3'UTR 0.50 TCGA-DX-A7EN-01 2 239973655 239973655 T G HDAC4 3'UTR 0.38 TCGA-DX-A7EN-01 3 182994710 182994710 C T MCF2L2 Silent p.G604G 0.40 TCGA-DX-A7EN-01 3 28364646 28364646 G T CMC1 3'UTR 0.42 TCGA-DX-A7EN-01 3 403486 403486 G A CHL1 Missense_Mutation p.V471M 0.53 deleterious(0) probably_damaging(0.973) TCGA-DX-A7EN-01 4 41957306 41957306 G A TMEM33 3'UTR 0.49 TCGA-DX-A7EN-01 5 110413260 110413260 T C TSLP 3'Flank 0.47 TCGA-DX-A7EN-01 5 13911598 13911598 A G DNAH5 Missense_Mutation p.I514T 0.75 benign(0.415) TCGA-DX-A7EN-01 5 68490472 68490472 A C CENPH Splice_Site p.X64_splice 0.48 TCGA-DX-A7EN-01 6 168366592 168366592 C T MLLT4 3'Flank 0.40 TCGA-DX-A7EN-01 6 29080103 29080103 C G OR2J3 Missense_Mutation p.L146V 0.54 tolerated(0.51) benign(0.126) TCGA-DX-A7EN-01 8 110984849 110984849 C T KCNV1 Missense_Mutation p.R210H 0.37 deleterious(0) possibly_damaging(0.849) TCGA-DX-A7EN-01 9 88650294 88650294 G C GOLM1 Missense_Mutation p.A335G 0.43 tolerated(0.11) benign(0.043) TCGA-DX-A7EN-01 X 140992774 140992774 C A MAGEC1 5'UTR 0.45 TCGA-DX-A7EN-01 X 48372971 48372971 G T PORCN Missense_Mutation p.V302F 0.34 deleterious(0) probably_damaging(1) TCGA-DX-A7EN-01 X 91642819 91642819 G A PCDH11X Missense_Mutation p.S1077N 0.55 tolerated(0.06) benign(0.009) TCGA-DX-A7EO-01 10 102295791 102295791 G A HIF1AN Missense_Mutation p.A26T 0.09 tolerated_low_confidence(0.61) benign(0.001) TCGA-DX-A7EO-01 10 106927044 106927044 T A SORCS3 Missense_Mutation p.F613Y 0.13 tolerated(1) benign(0.012) TCGA-DX-A7EO-01 10 118401628 118401628 G A PNLIPRP2 Missense_Mutation p.G393E 0.37 deleterious(0.01) probably_damaging(0.996) TCGA-DX-A7EO-01 11 2920995 2920995 C T SLC22A18 5'Flank 0.13 TCGA-DX-A7EO-01 11 66249827 66249862 CTCCCCTGAGGCCCCCTACATCTATGCTCTGCTCAG - DPP3 In_Frame_Del p.S53_S64del 0.41 TCGA-DX-A7EO-01 12 113425106 113425106 C T OAS2 Silent p.N147N 0.41 TCGA-DX-A7EO-01 14 102965779 102965779 G T TECPR2 3'UTR 0.18 TCGA-DX-A7EO-01 14 104151503 104151503 G T KLC1 Intron 0.12 TCGA-DX-A7EO-01 14 44976458 44976458 G A FSCB 5'UTR 0.29 TCGA-DX-A7EO-01 15 31217365 31217365 G A FAN1 Silent p.P736P 0.08 TCGA-DX-A7EO-01 16 19868010 19868010 G T IQCK 3'UTR 0.20 TCGA-DX-A7EO-01 16 28515297 28515297 G A IL27 Missense_Mutation p.P36S 0.13 tolerated_low_confidence(0.2) benign(0.013) TCGA-DX-A7EO-01 16 57602029 57602029 A G GPR114 Silent p.L361L 0.15 TCGA-DX-A7EO-01 17 4088163 4088163 G A ANKFY1 Missense_Mutation p.A592V 0.12 deleterious(0) probably_damaging(0.99) TCGA-DX-A7EO-01 17 7107560 7107560 G T DLG4 Silent p.P79P 0.15 TCGA-DX-A7EO-01 17 73586255 73586255 C T MYO15B 5'Flank 0.26 TCGA-DX-A7EO-01 19 44103500 44103500 G T ZNF576 3'UTR 0.25 TCGA-DX-A7EO-01 19 51857627 51857627 G A ETFB Missense_Mutation p.A89V 0.14 deleterious_low_confidence(0) benign(0.033) TCGA-DX-A7EO-01 1 160398257 160398257 T G VANGL2 3'UTR 0.41 TCGA-DX-A7EO-01 1 185834938 185834938 A C HMCN1 Missense_Mutation p.E188D 0.12 possibly_damaging(0.587) TCGA-DX-A7EO-01 1 214815232 214815232 A G CENPF Missense_Mutation p.E1184G 0.31 benign(0.23) TCGA-DX-A7EO-01 1 34191064 34191064 C T CSMD2 Missense_Mutation p.V821I 0.40 tolerated(0.38) possibly_damaging(0.545) TCGA-DX-A7EO-01 2 135160626 135160626 G A MGAT5 Missense_Mutation p.S483N 0.08 tolerated(0.08) benign(0.019) TCGA-DX-A7EO-01 3 149093481 149093482 CA - TM4SF1 Frame_Shift_Del p.C84Wfs*39 0.40 TCGA-DX-A7EO-01 3 164904818 164904818 C T SLITRK3 3'UTR 0.52 TCGA-DX-A7EO-01 3 196658996 196658996 A T SENP5 3'UTR 0.13 TCGA-DX-A7EO-01 4 110971055 110971055 A T ELOVL6 3'UTR 0.06 TCGA-DX-A7EO-01 4 156135600 156135600 G A NPY2R Missense_Mutation p.G170D 0.09 deleterious(0.03) benign(0.367) TCGA-DX-A7EO-01 4 74286989 74286989 C A ALB 3'UTR 0.25 TCGA-DX-A7EO-01 5 34908823 34908823 C T RAD1 3'UTR 0.11 TCGA-DX-A7EO-01 5 88016686 88016686 A - MEF2C 3'UTR 0.22 TCGA-DX-A7EO-01 6 128505867 128505867 G A PTPRK Missense_Mutation p.P291L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A7EO-01 6 150322199 150322199 A T RAET1K RNA 0.09 TCGA-DX-A7EO-01 6 35216698 35216698 C T SCUBE3 3'UTR 0.27 TCGA-DX-A7EO-01 6 96661703 96661703 G A FUT9 3'UTR 0.15 TCGA-DX-A7EO-01 8 61178601 61178601 C T CA8 Silent p.S100S 0.09 TCGA-DX-A7EO-01 9 19296118 19296118 A G DENND4C Missense_Mutation p.K305R 0.21 tolerated(0.83) benign(0.009) TCGA-DX-A7EO-01 X 108781279 108781279 T A NXT2 Missense_Mutation p.F62L 0.48 tolerated(0.28) possibly_damaging(0.516) TCGA-DX-A7EO-01 X 109698964 109698964 C T RGAG1 3'UTR 0.17 TCGA-DX-A7EQ-01 10 25877983 25877983 C T GPR158 Missense_Mutation p.R601W 0.44 deleterious(0) probably_damaging(1) TCGA-DX-A7EQ-01 11 207358 207358 G C BET1L 5'UTR 0.35 TCGA-DX-A7EQ-01 11 3688686 3688686 G A CHRNA10 Missense_Mutation p.P224L 0.39 deleterious(0.02) probably_damaging(0.994) TCGA-DX-A7EQ-01 11 67259587 67259587 G A PITPNM1 Missense_Mutation p.R1218C 0.49 tolerated_low_confidence(0.11) possibly_damaging(0.854) TCGA-DX-A7EQ-01 11 88241643 88241643 G A GRM5 3'UTR 0.22 TCGA-DX-A7EQ-01 12 393307 393307 A T KDM5A 3'UTR 0.05 TCGA-DX-A7EQ-01 12 81111289 81111289 G A MYF5 Silent p.P149P 0.50 TCGA-DX-A7EQ-01 13 30087858 30087858 C - SLC7A1 3'UTR 0.57 TCGA-DX-A7EQ-01 13 41834665 41834665 C T MTRF1 Missense_Mutation p.E127K 0.10 tolerated(0.07) benign(0.005) TCGA-DX-A7EQ-01 14 105517724 105517724 G C GPR132 Missense_Mutation p.I250M 0.46 deleterious(0) probably_damaging(0.99) TCGA-DX-A7EQ-01 14 65259971 65259971 G A SPTB Nonsense_Mutation p.Q804* 0.28 TCGA-DX-A7EQ-01 14 75190037 75190037 G T FCF1 Missense_Mutation p.V119L 0.24 tolerated(0.57) benign(0.029) TCGA-DX-A7EQ-01 15 41870591 41870591 C T TYRO3 3'UTR 0.18 TCGA-DX-A7EQ-01 16 3100142 3100142 G A MMP25 Nonsense_Mutation p.W122* 0.08 TCGA-DX-A7EQ-01 16 4033317 4033317 G A ADCY9 Missense_Mutation p.A812V 0.57 tolerated(0.28) benign(0.001) TCGA-DX-A7EQ-01 17 37864783 37864783 C T ERBB2 Silent p.L145L 0.17 TCGA-DX-A7EQ-01 17 40277196 40277196 G C RAB5C 3'Flank 0.32 TCGA-DX-A7EQ-01 17 72927065 72927065 C T OTOP2 Silent p.D445D 0.22 TCGA-DX-A7EQ-01 17 73496807 73496807 G T CASKIN2 3'UTR 0.25 TCGA-DX-A7EQ-01 17 970419 970419 G A ABR Silent p.P360P 0.46 TCGA-DX-A7EQ-01 18 14184171 14184171 A T ANKRD20A5P Intron 0.37 TCGA-DX-A7EQ-01 19 15807832 15807832 G A CYP4F12 Silent p.L504L 0.08 TCGA-DX-A7EQ-01 19 306713 306713 T A MIER2 Splice_Site p.X539_splice 0.51 TCGA-DX-A7EQ-01 19 38126321 38126321 C T ZFP30 Missense_Mutation p.R374K 0.48 tolerated(0.23) probably_damaging(0.978) TCGA-DX-A7EQ-01 19 39281518 39281518 C G LGALS7B Missense_Mutation p.D95E 0.37 tolerated(1) benign(0) TCGA-DX-A7EQ-01 19 43373052 43373052 C A PSG1 Missense_Mutation p.V282F 0.43 tolerated(0.43) benign(0.038) TCGA-DX-A7EQ-01 1 10403307 10403307 G A KIF1B Missense_Mutation p.R1171H 0.17 deleterious(0) probably_damaging(0.995) TCGA-DX-A7EQ-01 1 114506024 114506024 C A HIPK1 Missense_Mutation p.L707I 0.43 tolerated(0.06) benign(0.321) TCGA-DX-A7EQ-01 1 169101207 169101207 G C ATP1B1 3'UTR 0.16 TCGA-DX-A7EQ-01 1 205897159 205897159 C T SLC26A9 Silent p.S324S 0.45 TCGA-DX-A7EQ-01 1 43273167 43273167 T C CCDC23 Missense_Mutation p.Y40C 0.09 tolerated(0.11) possibly_damaging(0.821) TCGA-DX-A7EQ-01 1 86362070 86362070 A G COL24A1 Missense_Mutation p.L934P 0.10 tolerated(0.66) benign(0.001) TCGA-DX-A7EQ-01 20 36718299 36718299 T A RPRD1B 3'UTR 0.55 TCGA-DX-A7EQ-01 2 162930575 162930575 C A DPP4 5'UTR 0.43 TCGA-DX-A7EQ-01 2 179435239 179435239 G A TTN Missense_Mutation p.P25207L 0.26 TCGA-DX-A7EQ-01 2 198607837 198607837 G A BOLL Missense_Mutation p.A271V 0.67 tolerated_low_confidence(0.13) benign(0.006) TCGA-DX-A7EQ-01 2 232393509 232393509 C T NMUR1 Missense_Mutation p.A75T 0.09 tolerated(0.45) benign(0.002) TCGA-DX-A7EQ-01 2 63175630 63175630 A G EHBP1 Missense_Mutation p.Y585C 0.40 deleterious(0) probably_damaging(0.999) TCGA-DX-A7EQ-01 2 95847067 95847067 G A ZNF2 Missense_Mutation p.R165K 0.31 tolerated(1) benign(0) TCGA-DX-A7EQ-01 3 136261014 136261014 G A STAG1 Nonsense_Mutation p.R140* 0.13 TCGA-DX-A7EQ-01 4 114288730 114288730 G A ANK2 Missense_Mutation p.V3681I 0.39 benign(0.018) TCGA-DX-A7EQ-01 5 137502401 137502401 G A BRD8 Missense_Mutation p.S268F 0.50 deleterious(0) probably_damaging(0.996) TCGA-DX-A7EQ-01 5 145890622 145890622 A T TCERG1 3'UTR 0.08 TCGA-DX-A7EQ-01 5 170236578 170236578 C T GABRP Missense_Mutation p.T280M 0.48 deleterious(0) probably_damaging(0.999) TCGA-DX-A7EQ-01 5 38982076 38982076 T G RICTOR Missense_Mutation p.I216L 0.35 tolerated(1) benign(0.137) TCGA-DX-A7EQ-01 6 74227622 74227622 C T EEF1A1 Missense_Mutation p.A434T 0.41 deleterious_low_confidence(0.03) benign(0.019) TCGA-DX-A7EQ-01 7 137776523 137776523 A G AKR1D1 Missense_Mutation p.T91A 0.43 deleterious(0) possibly_damaging(0.898) TCGA-DX-A7EQ-01 7 149545354 149545354 C T ZNF862 Silent p.L258L 0.18 TCGA-DX-A7EQ-01 8 123964551 123964551 C - ZHX2 Frame_Shift_Del p.Y267* 0.28 TCGA-DX-A7EQ-01 8 39239107 39239107 T A ADAM5 RNA 0.36 TCGA-DX-A7EQ-01 8 52321349 52321349 C T PXDNL Silent p.A945A 0.10 TCGA-DX-A7EQ-01 8 69030858 69030858 C A PREX2 Missense_Mutation p.H1134N 0.09 tolerated_low_confidence(0.07) probably_damaging(0.968) TCGA-DX-A7EQ-01 9 128678030 128678030 A G PBX3 Missense_Mutation p.M114V 0.49 deleterious(0.01) probably_damaging(0.983) TCGA-DX-A7EQ-01 9 130471904 130471904 A C C9orf117 Missense_Mutation p.Q122P 0.10 deleterious(0) probably_damaging(0.952) TCGA-DX-A7EQ-01 9 27247404 27247404 T A LINC00032 RNA 0.83 TCGA-DX-A7EQ-01 9 92006299 92006299 T C SEMA4D Silent p.R218R 0.50 TCGA-DX-A7ER-01 10 27703289 27703289 C T PTCHD3 5'UTR 0.49 TCGA-DX-A7ER-01 10 61829797 61829797 A T ANK3 Missense_Mutation p.S3614R 0.06 probably_damaging(0.969) TCGA-DX-A7ER-01 10 63852852 63852852 G C ARID5B 3'UTR 0.48 TCGA-DX-A7ER-01 10 73545427 73545427 C T CDH23 Missense_Mutation p.R1923W 0.09 deleterious(0) possibly_damaging(0.632) TCGA-DX-A7ER-01 11 1264413 1264413 C T MUC5B Silent p.T2101T 0.48 TCGA-DX-A7ER-01 11 66192048 66192048 G A NPAS4 Missense_Mutation p.A563T 0.50 tolerated(0.07) benign(0.001) TCGA-DX-A7ER-01 11 70318919 70318919 C G SHANK2 3'UTR 0.55 TCGA-DX-A7ER-01 12 16189290 16189290 C T DERA Missense_Mutation p.T292I 0.57 deleterious(0) possibly_damaging(0.529) TCGA-DX-A7ER-01 12 27179393 27179418 AATGTGGTCCTCCTGCCTCTTTCAAT - MED21 Frame_Shift_Del p.C29Yfs*6 0.54 TCGA-DX-A7ER-01 12 50749013 50749013 A G FAM186A Silent p.G534G 0.43 TCGA-DX-A7ER-01 13 32356836 32356836 G T RXFP2 Missense_Mutation p.G294V 0.42 tolerated(0.17) benign(0.007) TCGA-DX-A7ER-01 14 52196137 52196137 C T FRMD6 3'Flank 0.54 TCGA-DX-A7ER-01 14 53244773 53244773 A G GNPNAT1 3'UTR 0.42 TCGA-DX-A7ER-01 15 75942421 75942421 C G SNX33 Nonsense_Mutation p.Y326* 0.47 TCGA-DX-A7ER-01 17 73484164 73484164 C T KIAA0195 Silent p.I187I 0.46 TCGA-DX-A7ER-01 19 13410084 13410084 G C CACNA1A Missense_Mutation p.A788G 0.47 possibly_damaging(0.866) TCGA-DX-A7ER-01 19 17679325 17679325 A G COLGALT1 Missense_Mutation p.Y211C 0.50 deleterious(0) probably_damaging(0.999) TCGA-DX-A7ER-01 1 120839624 120839624 G A FAM72B 5'UTR 0.23 TCGA-DX-A7ER-01 1 144868067 144868067 C G PDE4DIP Missense_Mutation p.R1791T 0.19 tolerated(0.22) benign(0.012) TCGA-DX-A7ER-01 1 152085283 152085283 C T TCHH Missense_Mutation p.R137H 0.53 unknown(0) TCGA-DX-A7ER-01 1 228494137 228494137 C A OBSCN Silent p.T4865T 0.57 TCGA-DX-A7ER-01 1 248652199 248652199 C G OR2T5 Missense_Mutation p.Q104E 0.31 deleterious(0) possibly_damaging(0.881) TCGA-DX-A7ER-01 1 95323004 95323004 G C SLC44A3 Missense_Mutation p.A396P 0.06 deleterious(0) probably_damaging(0.945) TCGA-DX-A7ER-01 22 32108558 32108558 G A PRR14L Missense_Mutation p.P1756L 0.54 tolerated(0.14) benign(0.025) TCGA-DX-A7ER-01 2 182543257 182543257 G A NEUROD1 Missense_Mutation p.R111W 0.08 deleterious(0) probably_damaging(1) TCGA-DX-A7ER-01 2 210782680 210782680 A G UNC80 Missense_Mutation p.K1671E 0.06 probably_damaging(0.979) TCGA-DX-A7ER-01 2 220136303 220136303 C T TUBA4B RNA 0.43 TCGA-DX-A7ER-01 3 48667882 48667882 C A SLC26A6 Missense_Mutation p.D439Y 0.45 deleterious(0) possibly_damaging(0.781) TCGA-DX-A7ER-01 3 58514611 58514611 A C ACOX2 Nonsense_Mutation p.Y355* 0.54 TCGA-DX-A7ER-01 3 77614263 77614263 G A ROBO2 Missense_Mutation p.R630H 0.58 deleterious(0.01) benign(0.365) TCGA-DX-A7ER-01 4 176556169 176556169 C A GPM6A Missense_Mutation p.V242L 0.70 tolerated(1) benign(0.012) TCGA-DX-A7ER-01 5 135692561 135692561 G A TRPC7 Missense_Mutation p.A172V 0.42 deleterious(0) probably_damaging(0.953) TCGA-DX-A7ER-01 6 29408456 29408456 G T OR10C1 Missense_Mutation p.V222F 0.51 tolerated(0.24) benign(0.009) TCGA-DX-A7ER-01 6 29550086 29550086 C G SNORD32B RNA 0.46 TCGA-DX-A7ER-01 6 42712597 42712597 G T TBCC 3'UTR 0.17 TCGA-DX-A7ER-01 6 90347454 90347454 T A LYRM2 Intron 0.58 TCGA-DX-A7ER-01 7 107601660 107601660 C T LAMB1 Silent p.L700L 0.35 TCGA-DX-A7ER-01 8 109797134 109797134 G A TMEM74 Missense_Mutation p.A65V 0.43 tolerated(0.14) benign(0.231) TCGA-DX-A7ER-01 8 11637272 11637272 T C NEIL2 Missense_Mutation p.S102P 0.05 tolerated(0.23) benign(0.015) TCGA-DX-A7ER-01 9 88952216 88952219 AATA - ZCCHC6 Intron 0.39 TCGA-DX-A7ER-01 X 67940902 67940902 G A STARD8 Missense_Mutation p.R729Q 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-DX-A7ER-01 Y 4925493 4925493 T A PCDH11Y Missense_Mutation p.L210Q 0.98 deleterious(0) probably_damaging(0.997) TCGA-DX-A7ES-01 10 70531091 70531091 T C CCAR1 Silent p.D809D 0.18 TCGA-DX-A7ES-01 11 1027463 1027463 C T MUC6 Missense_Mutation p.R679H 0.18 unknown(0) TCGA-DX-A7ES-01 11 113102414 113102414 G A NCAM1 Silent p.S428S 0.09 TCGA-DX-A7ES-01 11 116661095 116661095 G A APOA5 Nonsense_Mutation p.R284* 0.25 TCGA-DX-A7ES-01 11 67013488 67013488 C T KDM2A Silent p.L622L 0.27 TCGA-DX-A7ES-01 12 19671879 19671879 A - AEBP2 3'UTR 0.15 TCGA-DX-A7ES-01 12 40704301 40704301 C T LRRK2 Silent p.R1462R 0.10 TCGA-DX-A7ES-01 12 69113363 69113363 G C NUP107 Missense_Mutation p.E394Q 0.41 tolerated(0.1) probably_damaging(1) TCGA-DX-A7ES-01 12 69264130 69264130 C T CPM Missense_Mutation p.E161K 0.24 tolerated(0.74) benign(0.389) TCGA-DX-A7ES-01 12 75737700 75737700 C G GLIPR1L1 Silent p.V134V 0.64 TCGA-DX-A7ES-01 12 96674468 96674468 G A CDK17 Intron 0.68 TCGA-DX-A7ES-01 12 96674508 96674508 G A CDK17 Intron 0.56 TCGA-DX-A7ES-01 14 20898562 20898562 C G KLHL33 Missense_Mutation p.W91C 0.16 tolerated(0.18) possibly_damaging(0.796) TCGA-DX-A7ES-01 14 24723980 24723980 C T TGM1 Missense_Mutation p.V660M 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-DX-A7ES-01 14 77275610 77275610 C T ANGEL1 Nonsense_Mutation p.W147* 0.25 TCGA-DX-A7ES-01 14 80664584 80664584 G - DIO2 3'Flank 0.13 TCGA-DX-A7ES-01 15 59323062 59323062 T G RNF111 Nonsense_Mutation p.L14* 0.11 TCGA-DX-A7ES-01 15 68612722 68612722 C T ITGA11 Missense_Mutation p.C806Y 0.22 deleterious(0) probably_damaging(1) TCGA-DX-A7ES-01 15 69652383 69652383 C T PAQR5 5'UTR 0.19 TCGA-DX-A7ES-01 16 29852944 29852944 A G MVP Missense_Mutation p.M407V 0.14 deleterious(0) possibly_damaging(0.761) TCGA-DX-A7ES-01 16 4643291 4643291 C T C16orf96 Silent p.C947C 0.22 TCGA-DX-A7ES-01 16 71196449 71196449 T A HYDIN Missense_Mutation p.H234L 0.18 possibly_damaging(0.805) TCGA-DX-A7ES-01 18 14478199 14478199 G A CXADRP3 RNA 0.20 TCGA-DX-A7ES-01 19 11630000 11630000 G A ECSIT 5'UTR 0.28 TCGA-DX-A7ES-01 19 2715030 2715030 G C DIRAS1 3'UTR 0.35 TCGA-DX-A7ES-01 19 8550930 8550930 G A HNRNPM Missense_Mutation p.G540S 0.29 tolerated(0.11) benign(0.025) TCGA-DX-A7ES-01 19 8551055 8551055 G A HNRNPM Silent p.L581L 0.29 TCGA-DX-A7ES-01 19 8551120 8551120 G A HNRNPM Missense_Mutation p.G603D 0.27 deleterious(0) benign(0.282) TCGA-DX-A7ES-01 1 109823657 109823657 G A PSRC1 Missense_Mutation p.P216S 0.26 tolerated(0.18) benign(0.01) TCGA-DX-A7ES-01 1 116675980 116675980 G A MAB21L3 Silent p.P361P 0.11 TCGA-DX-A7ES-01 1 2436504 2436504 G A PLCH2 3'UTR 0.25 TCGA-DX-A7ES-01 1 40030432 40030432 G A PABPC4 Missense_Mutation p.P420L 0.21 tolerated(0.08) benign(0.045) TCGA-DX-A7ES-01 1 77528785 77528785 G A ST6GALNAC5 Missense_Mutation p.R302Q 0.25 possibly_damaging(0.797) TCGA-DX-A7ES-01 20 30782594 30782594 G A PLAGL2 3'UTR 0.16 TCGA-DX-A7ES-01 20 34055380 34055380 G A CEP250 Missense_Mutation p.R284Q 0.15 benign(0.261) TCGA-DX-A7ES-01 20 57430245 57430245 C T GNAS Missense_Mutation p.A642V 0.08 tolerated_low_confidence(0.09) benign(0.106) TCGA-DX-A7ES-01 2 172602373 172602373 A G DYNC1I2 Missense_Mutation p.H580R 0.21 tolerated(0.56) benign(0.004) TCGA-DX-A7ES-01 2 225666667 225666667 G C DOCK10 Silent p.P1453P 0.08 TCGA-DX-A7ES-01 2 231937071 231937071 A G PSMD1 Missense_Mutation p.I275V 0.14 tolerated(0.29) benign(0.01) TCGA-DX-A7ES-01 2 279929 279929 A T FAM150B 3'UTR 0.08 TCGA-DX-A7ES-01 2 36986282 36986282 G T VIT Intron 0.27 TCGA-DX-A7ES-01 3 18390964 18390964 G A SATB1 Nonsense_Mutation p.Q696* 0.18 TCGA-DX-A7ES-01 3 186504939 186504939 T G EIF4A2 Missense_Mutation p.C265W 0.16 deleterious(0) probably_damaging(0.962) TCGA-DX-A7ES-01 3 22424348 22424406 AGTTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTATTA GTTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTATT HMGB1P5 RNA 0.12 TCGA-DX-A7ES-01 3 25675377 25675377 T C TOP2B Silent p.K322K 0.06 TCGA-DX-A7ES-01 5 153056709 153056709 A G GRIA1 Silent p.R349R 0.06 TCGA-DX-A7ES-01 5 71490850 71490850 C T MAP1B Silent p.S556S 0.05 TCGA-DX-A7ES-01 6 138752947 138752947 G C NHSL1 Silent p.V849V 0.06 TCGA-DX-A7ES-01 7 150647132 150647132 G A KCNH2 Intron 0.19 TCGA-DX-A7ES-01 9 112172683 112172683 C T PTPN3 Silent p.E442E 0.66 TCGA-DX-A7ES-01 9 6329394 6329394 C T TPD52L3 3'UTR 0.08 TCGA-DX-A7ES-01 X 117744376 117744376 C A DOCK11 Missense_Mutation p.L1031M 0.13 deleterious(0.03) possibly_damaging(0.777) TCGA-DX-A7ES-01 X 48973411 48973429 CCTGCTGGGAGACAGGCCG - GPKOW Frame_Shift_Del p.R290Sfs*86 0.20 TCGA-DX-A7ES-01 X 54956774 54956774 A G TRO Missense_Mutation p.N1206S 0.27 tolerated_low_confidence(1) benign(0.056) TCGA-DX-A7ET-01 10 116623625 116623625 T C FAM160B1 3'UTR 0.11 TCGA-DX-A7ET-01 10 95995711 95995711 C T PLCE1 Nonsense_Mutation p.R752* 0.09 TCGA-DX-A7ET-01 11 124738935 124738935 G A ROBO3 Missense_Mutation p.R133H 0.37 deleterious(0) probably_damaging(1) TCGA-DX-A7ET-01 11 20699519 20699519 G A NELL1 Missense_Mutation p.V33I 0.46 tolerated(0.62) benign(0) TCGA-DX-A7ET-01 11 55063041 55063041 T G TRIM51HP RNA 0.19 TCGA-DX-A7ET-01 11 55371045 55371045 C A OR4C11 Missense_Mutation p.V269L 0.22 tolerated(0.06) benign(0.436) TCGA-DX-A7ET-01 11 93400776 93400776 C T KIAA1731 Nonsense_Mutation p.R38* 0.26 TCGA-DX-A7ET-01 13 58299581 58299581 T C PCDH17 3'UTR 0.07 TCGA-DX-A7ET-01 14 20249201 20249201 C G OR4M1 Silent p.S240S 0.14 TCGA-DX-A7ET-01 14 21216275 21216275 G A EDDM3A 3'UTR 0.16 TCGA-DX-A7ET-01 14 21424364 21424364 G A RNASE2 Missense_Mutation p.R145Q 0.50 tolerated(0.77) benign(0.147) TCGA-DX-A7ET-01 14 24653087 24653087 G A IPO4 Silent p.S629S 0.20 TCGA-DX-A7ET-01 14 57877554 57877554 C G NAA30 3'UTR 0.31 TCGA-DX-A7ET-01 14 60945104 60945104 C T C14orf39 Nonsense_Mutation p.W79* 0.40 TCGA-DX-A7ET-01 14 65541979 65541979 G C MAX 3'Flank 0.26 TCGA-DX-A7ET-01 15 23812215 23812215 A G MKRN3 Missense_Mutation p.E429G 0.11 deleterious(0.02) benign(0.003) TCGA-DX-A7ET-01 15 55838428 55838428 G A PYGO1 Silent p.N351N 0.19 TCGA-DX-A7ET-01 17 15134333 15134333 C T PMP22 Silent p.S128S 0.17 TCGA-DX-A7ET-01 17 17165333 17165333 T A COPS3 Nonsense_Mutation p.K237* 0.09 TCGA-DX-A7ET-01 17 18881217 18881217 C T FAM83G Missense_Mutation p.V588I 0.25 tolerated(0.48) benign(0.055) TCGA-DX-A7ET-01 17 7579328 7579329 - TAAG TP53 Nonsense_Mutation p.K120Tfs*2 0.47 TCGA-DX-A7ET-01 19 3293546 3293546 G A CELF5 Intron 0.14 TCGA-DX-A7ET-01 19 44933794 44933794 G A ZNF229 Nonsense_Mutation p.R388* 0.77 TCGA-DX-A7ET-01 19 45801209 45801209 G A MARK4 Missense_Mutation p.R625Q 0.18 deleterious(0) benign(0.265) TCGA-DX-A7ET-01 19 47969082 47969082 C G SLC8A2 Missense_Mutation p.K193N 0.19 deleterious(0) probably_damaging(0.96) TCGA-DX-A7ET-01 1 1117778 1117778 C T TTLL10 Missense_Mutation p.R290C 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A7ET-01 1 16054813 16054813 G A PLEKHM2 Missense_Mutation p.V628M 0.38 deleterious(0) possibly_damaging(0.878) TCGA-DX-A7ET-01 1 21031320 21031320 G A KIF17 Missense_Mutation p.S248F 0.12 deleterious(0) probably_damaging(0.93) TCGA-DX-A7ET-01 1 6696236 6696236 C T DNAJC11 Missense_Mutation p.R532Q 0.18 tolerated(0.1) possibly_damaging(0.727) TCGA-DX-A7ET-01 20 33851599 33851599 G A MMP24 Missense_Mutation p.D275N 0.14 tolerated(0.25) probably_damaging(0.988) TCGA-DX-A7ET-01 20 42789014 42789014 C T JPH2 Missense_Mutation p.R138H 0.13 deleterious(0) probably_damaging(0.998) TCGA-DX-A7ET-01 2 201726031 201726035 CTACC - CLK1 Frame_Shift_Del p.G148Kfs*5 0.24 TCGA-DX-A7ET-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.15 TCGA-DX-A7ET-01 2 241390149 241390149 A T AC110619.2 Silent p.T86T 0.22 TCGA-DX-A7ET-01 3 111849243 111849243 G A GCSAM Intron 0.22 TCGA-DX-A7ET-01 3 125855695 125855695 C T ALDH1L1 Missense_Mutation p.R429H 0.11 tolerated(0.09) benign(0.006) TCGA-DX-A7ET-01 3 14529453 14529453 C T SLC6A6 3'UTR 0.08 TCGA-DX-A7ET-01 3 193028437 193028437 G C ATP13A5 Missense_Mutation p.Q839E 0.21 deleterious(0) possibly_damaging(0.883) TCGA-DX-A7ET-01 3 47269930 47269930 A T KIF9 3'UTR 0.15 TCGA-DX-A7ET-01 4 54968099 54968099 T C GSX2 3'UTR 0.19 TCGA-DX-A7ET-01 5 123973290 123973290 G A ZNF608 3'UTR 0.16 TCGA-DX-A7ET-01 5 132158435 132158435 C T SHROOM1 3'UTR 0.18 TCGA-DX-A7ET-01 5 55204310 55204310 A G IL31RA Intron 0.06 TCGA-DX-A7ET-01 5 95223760 95223760 G A ELL2 3'UTR 0.16 TCGA-DX-A7ET-01 6 109714072 109714072 A G PPIL6 Missense_Mutation p.I324T 0.10 tolerated(0.42) benign(0.012) TCGA-DX-A7ET-01 6 110059609 110059609 A G FIG4 Missense_Mutation p.H243R 0.20 deleterious(0) possibly_damaging(0.507) TCGA-DX-A7ET-01 6 129826487 129826487 G A LAMA2 Missense_Mutation p.R2897Q 0.18 deleterious(0.02) benign(0.016) TCGA-DX-A7ET-01 6 144146203 144146203 C G PHACTR2 3'Flank 0.25 TCGA-DX-A7ET-01 6 26104193 26104193 A G HIST1H4C Silent p.K6K 0.45 TCGA-DX-A7ET-01 7 119915492 119915492 C T KCND2 Missense_Mutation p.A269V 0.10 deleterious(0) probably_damaging(1) TCGA-DX-A7ET-01 7 87104780 87104780 A G ABCB4 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-DX-A7ET-01 8 101271149 101271149 G A RNF19A Missense_Mutation p.P718S 0.07 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-DX-A7ET-01 8 85686863 85686863 C A RALYL Missense_Mutation p.N115K 0.26 tolerated(0.26) benign(0.072) TCGA-DX-A7ET-01 9 100240849 100240849 A G TDRD7 Silent p.P765P 0.19 TCGA-DX-A7ET-01 9 136535785 136535785 G A SARDH Missense_Mutation p.P806S 0.09 tolerated(0.06) probably_damaging(0.973) TCGA-DX-A7ET-01 9 80879143 80879143 T C CEP78 Silent p.N513N 0.39 TCGA-DX-A7ET-01 X 135630974 135630974 T C VGLL1 Silent p.S147S 0.09 TCGA-DX-A7ET-01 X 53112160 53112160 T A TSPYL2 Silent p.V160V 0.07 TCGA-DX-A7ET-01 X 71855041 71855041 G A PHKA1 Missense_Mutation p.P560S 0.22 deleterious(0) probably_damaging(0.999) TCGA-DX-A7ET-01 X 8138101 8138101 A T VCX2 Missense_Mutation p.F131Y 0.60 tolerated_low_confidence(1) unknown(0) TCGA-DX-A7EU-01 10 133930650 133930650 G A JAKMIP3 Missense_Mutation p.A69T 0.43 tolerated(1) benign(0.003) TCGA-DX-A7EU-01 10 29581453 29581453 T C LYZL1 Missense_Mutation p.C95R 0.11 deleterious(0) probably_damaging(1) TCGA-DX-A7EU-01 10 50953842 50953842 A G OGDHL Splice_Site p.X492_splice 0.15 TCGA-DX-A7EU-01 10 7214483 7214483 C T SFMBT2 Missense_Mutation p.V709M 0.17 tolerated(0.13) benign(0.066) TCGA-DX-A7EU-01 10 73044578 73044578 G A UNC5B Missense_Mutation p.A136T 0.25 tolerated(0.43) possibly_damaging(0.499) TCGA-DX-A7EU-01 10 95537148 95537148 G A LGI1 Silent p.S100S 0.09 TCGA-DX-A7EU-01 11 1017523 1017523 C T MUC6 Missense_Mutation p.E1760K 0.06 unknown(0) TCGA-DX-A7EU-01 11 121028808 121028808 G A TECTA Missense_Mutation p.D1522N 0.16 tolerated(0.07) probably_damaging(0.912) TCGA-DX-A7EU-01 11 17427096 17427096 G A ABCC8 Missense_Mutation p.T1115M 0.48 deleterious(0) probably_damaging(0.995) TCGA-DX-A7EU-01 11 61897827 61897827 A G INCENP Silent p.P276P 0.34 TCGA-DX-A7EU-01 11 64594547 64594547 C T CDC42BPG Missense_Mutation p.R1455Q 0.14 tolerated(0.34) benign(0.202) TCGA-DX-A7EU-01 11 66243176 66243176 G A PELI3 Silent p.K316K 0.25 TCGA-DX-A7EU-01 11 66243493 66243493 G A PELI3 Missense_Mutation p.C422Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-DX-A7EU-01 11 66243706 66243706 G T PELI3 3'UTR 0.31 TCGA-DX-A7EU-01 11 66244021 66244021 G A PELI3 3'UTR 0.28 TCGA-DX-A7EU-01 11 66244147 66244147 G T PELI3 3'UTR 0.56 TCGA-DX-A7EU-01 11 73814461 73814461 G A C2CD3 Silent p.L765L 0.31 TCGA-DX-A7EU-01 12 113496104 113496104 G A DTX1 Missense_Mutation p.R36H 0.07 tolerated(0.08) possibly_damaging(0.688) TCGA-DX-A7EU-01 12 130927121 130927121 G A RIMBP2 Missense_Mutation p.T242M 0.19 tolerated(0.11) benign(0.313) TCGA-DX-A7EU-01 12 133779911 133779911 C G ZNF268 Missense_Mutation p.Q547E 0.20 deleterious(0.04) possibly_damaging(0.545) TCGA-DX-A7EU-01 12 133779967 133779967 C A ZNF268 Missense_Mutation p.F565L 0.17 deleterious(0.04) probably_damaging(0.994) TCGA-DX-A7EU-01 12 47172381 47172381 T C SLC38A4 Missense_Mutation p.E299G 0.50 tolerated(0.19) benign(0.004) TCGA-DX-A7EU-01 12 57390107 57390107 G A GPR182 Missense_Mutation p.A372T 0.37 tolerated_low_confidence(0.14) benign(0.025) TCGA-DX-A7EU-01 12 58123509 58123509 G A AGAP2 Missense_Mutation p.P824S 0.12 deleterious(0.05) probably_damaging(0.961) TCGA-DX-A7EU-01 12 63974526 63974526 G A DPY19L2 Missense_Mutation p.R606C 0.16 deleterious(0.02) benign(0.035) TCGA-DX-A7EU-01 15 25226996 25226996 G T SNRPN 3'Flank 0.44 TCGA-DX-A7EU-01 15 52688573 52688573 A T MYO5A Missense_Mutation p.N447K 0.08 deleterious(0.01) benign(0.077) TCGA-DX-A7EU-01 15 56383422 56383422 A C RFX7 3'UTR 0.10 TCGA-DX-A7EU-01 15 89390479 89390479 G A ACAN Missense_Mutation p.V479I 0.21 deleterious(0.03) unknown(0) TCGA-DX-A7EU-01 16 53321893 53321893 A C CHD9 Missense_Mutation p.K1738N 0.68 probably_damaging(0.913) TCGA-DX-A7EU-01 17 37360825 37360825 G A RPL19 Missense_Mutation p.R172H 0.08 deleterious(0.05) benign(0.004) TCGA-DX-A7EU-01 17 39274274 39274274 A T KRTAP4-11 Silent p.T98T 0.45 TCGA-DX-A7EU-01 17 40277420 40277420 T A RAB5C 3'Flank 0.22 TCGA-DX-A7EU-01 17 72521968 72521968 C A CD300LB Missense_Mutation p.D134Y 0.15 deleterious(0) possibly_damaging(0.882) TCGA-DX-A7EU-01 17 7577570 7577570 C T TP53 Missense_Mutation p.M237I 0.76 deleterious(0) probably_damaging(0.997) TCGA-DX-A7EU-01 17 80696429 80696429 G A FN3K Missense_Mutation p.R69Q 0.24 deleterious(0.02) benign(0.269) TCGA-DX-A7EU-01 17 8701913 8701913 C T MFSD6L Missense_Mutation p.V176I 0.11 tolerated(0.36) benign(0.039) TCGA-DX-A7EU-01 18 59166690 59166690 C A CDH20 Missense_Mutation p.T173N 0.35 tolerated(0.09) benign(0.09) TCGA-DX-A7EU-01 19 11565658 11565658 C T ELAVL3 Missense_Mutation p.A263T 0.17 tolerated(0.62) benign(0.003) TCGA-DX-A7EU-01 19 12874393 12874393 T C HOOK2 Silent p.R653R 0.38 TCGA-DX-A7EU-01 19 14267478 14267478 C G LPHN1 Missense_Mutation p.V1014L 0.41 deleterious(0.02) benign(0.283) TCGA-DX-A7EU-01 19 15132310 15132310 G A CCDC105 Silent p.A340A 0.15 TCGA-DX-A7EU-01 19 38876161 38876161 G A GGN Missense_Mutation p.R581C 0.09 deleterious_low_confidence(0.05) probably_damaging(0.975) TCGA-DX-A7EU-01 19 45977006 45977006 G A FOSB 3'UTR 0.10 TCGA-DX-A7EU-01 19 51217492 51217492 G A SHANK1 Missense_Mutation p.A196V 0.14 benign(0.159) TCGA-DX-A7EU-01 19 56369983 56369983 G A NLRP4 Nonsense_Mutation p.W408* 0.12 TCGA-DX-A7EU-01 19 8131121 8131121 G A FBN3 Silent p.S2704S 0.12 TCGA-DX-A7EU-01 1 100176425 100176425 C T FRRS1 Missense_Mutation p.V521I 0.13 tolerated(0.09) benign(0.416) TCGA-DX-A7EU-01 1 120165569 120165569 C T ZNF697 Missense_Mutation p.R466H 0.50 tolerated(0.15) benign(0.007) TCGA-DX-A7EU-01 1 160388836 160388836 A G VANGL2 Silent p.S79S 0.10 TCGA-DX-A7EU-01 1 196309693 196309693 C T KCNT2 Missense_Mutation p.V521I 0.25 tolerated(0.08) benign(0.403) TCGA-DX-A7EU-01 1 2118644 2118644 G C C1orf86 3'Flank 0.12 TCGA-DX-A7EU-01 1 211922024 211922024 T A LPGAT1 3'UTR 0.18 TCGA-DX-A7EU-01 1 223963659 223963659 C T CAPN2 3'UTR 0.13 TCGA-DX-A7EU-01 1 230807385 230807385 A G COG2 Missense_Mutation p.S300G 0.24 tolerated(0.25) benign(0.09) TCGA-DX-A7EU-01 1 29096160 29096160 G C YTHDF2 3'UTR 0.09 TCGA-DX-A7EU-01 1 29641954 29641954 G A PTPRU Missense_Mutation p.V1110I 0.08 tolerated(0.1) probably_damaging(0.995) TCGA-DX-A7EU-01 1 52305981 52305981 C T NRD1 Missense_Mutation p.D183N 0.11 tolerated_low_confidence(0.14) possibly_damaging(0.539) TCGA-DX-A7EU-01 1 57535064 57535064 C T DAB1 Missense_Mutation p.R211H 0.15 tolerated(0.15) benign(0.014) TCGA-DX-A7EU-01 1 6214848 6214848 G A CHD5 Missense_Mutation p.A206V 0.12 tolerated(0.1) benign(0.109) TCGA-DX-A7EU-01 1 62677113 62677113 C T L1TD1 3'UTR 0.10 TCGA-DX-A7EU-01 20 20258030 20258030 C T C20orf26 Silent p.D908D 0.08 TCGA-DX-A7EU-01 20 23026774 23026774 C A THBD 3'UTR 0.24 TCGA-DX-A7EU-01 20 30783991 30783991 C T PLAGL2 3'UTR 0.10 TCGA-DX-A7EU-01 20 3305587 3305587 C T C20orf194 Missense_Mutation p.G406E 0.07 tolerated(1) benign(0.004) TCGA-DX-A7EU-01 20 60878734 60878734 C T ADRM1 Missense_Mutation p.T37I 0.06 tolerated(0.22) benign(0.272) TCGA-DX-A7EU-01 20 62195106 62195106 G A HELZ2 Missense_Mutation p.A1690V 0.31 tolerated(1) benign(0.098) TCGA-DX-A7EU-01 22 18652696 18652696 G A USP18 Missense_Mutation p.R238H 0.13 tolerated(0.66) benign(0.004) TCGA-DX-A7EU-01 2 169870820 169870820 A G ABCB11 Missense_Mutation p.F48S 0.09 deleterious(0) possibly_damaging(0.501) TCGA-DX-A7EU-01 2 223169444 223169444 C T CCDC140 3'UTR 0.12 TCGA-DX-A7EU-01 2 31000431 31000431 A T CAPN13 Splice_Site p.X91_splice 0.16 TCGA-DX-A7EU-01 2 45172100 45172100 A - SIX3 3'UTR 0.08 TCGA-DX-A7EU-01 2 99758022 99758023 - CGCAGGCGCACGCCCA C2ORF15 5'UTR 0.09 TCGA-DX-A7EU-01 3 137484304 137484304 G T SOX14 Missense_Mutation p.K226N 0.31 tolerated(0.06) benign(0.306) TCGA-DX-A7EU-01 3 156395793 156395793 G A TIPARP Missense_Mutation p.A103T 0.13 tolerated_low_confidence(0.67) benign(0) TCGA-DX-A7EU-01 3 183400592 183400592 A C KLHL24 3'UTR 0.18 TCGA-DX-A7EU-01 4 113353032 113353032 A T ALPK1 Missense_Mutation p.T777S 0.30 tolerated(0.49) benign(0.014) TCGA-DX-A7EU-01 4 155749732 155749732 A G RBM46 3'UTR 0.21 TCGA-DX-A7EU-01 4 169311645 169311645 C T DDX60L Intron 0.55 TCGA-DX-A7EU-01 4 177102779 177102779 G A WDR17 3'Flank 0.13 TCGA-DX-A7EU-01 4 20525452 20525452 T C SLIT2 Silent p.L400L 0.12 TCGA-DX-A7EU-01 4 77662897 77662897 G A SHROOM3 Missense_Mutation p.G1191R 0.26 tolerated(0.26) benign(0.021) TCGA-DX-A7EU-01 5 140554545 140554545 G A PCDHB7 Missense_Mutation p.R710Q 0.04 deleterious_low_confidence(0.02) benign(0.234) TCGA-DX-A7EU-01 5 176687057 176687057 G A NSD1 Silent p.G1678G 0.08 TCGA-DX-A7EU-01 6 159457174 159457174 C T TAGAP Missense_Mutation p.M627I 0.43 deleterious(0.05) benign(0.071) TCGA-DX-A7EU-01 6 159457177 159457177 C T TAGAP Silent p.R626R 0.45 TCGA-DX-A7EU-01 6 161139335 161139335 C A PLG Missense_Mutation p.P266Q 0.13 deleterious(0) benign(0.37) TCGA-DX-A7EU-01 6 62604721 62604721 A T KHDRBS2 Missense_Mutation p.I210N 0.15 tolerated(0.35) benign(0.102) TCGA-DX-A7EU-01 7 44073723 44073723 C T RASA4CP RNA 0.09 TCGA-DX-A7EU-01 8 110457342 110457342 T C PKHD1L1 Silent p.T1748T 0.08 TCGA-DX-A7EU-01 8 17079195 17079195 T C ZDHHC2 3'UTR 0.29 TCGA-DX-A7EU-01 8 31014958 31014958 C G WRN Silent p.G1298G 0.27 TCGA-DX-A7EU-01 8 75227787 75227787 C T JPH1 Missense_Mutation p.G150S 0.07 deleterious(0) probably_damaging(0.999) TCGA-DX-A7EU-01 9 130684163 130684163 C T PIP5KL1 Missense_Mutation p.R383H 0.13 tolerated(0.25) benign(0.099) TCGA-DX-A7EU-01 9 138457275 138457275 C T PAEP Silent p.D147D 0.10 TCGA-DX-A7EU-01 9 2717764 2717764 C T KCNV2 Missense_Mutation p.R9W 0.41 tolerated_low_confidence(0.07) benign(0.002) TCGA-DX-A7EU-01 9 39085718 39085718 C T CNTNAP3 Intron 0.12 TCGA-DX-A7EU-01 X 2864082 2864082 G A ARSE Silent p.H316H 0.21 TCGA-DX-A7EU-01 X 48932827 48932827 C T WDR45 Missense_Mutation p.R315H 0.11 tolerated(0.09) possibly_damaging(0.498) TCGA-DX-A7EU-01 X 53457535 53457535 C T RIBC1 Silent p.I285I 0.06 TCGA-DX-A7EU-01 X 73044010 73044010 G T XIST RNA 0.21 TCGA-DX-A7EU-01 X 76872085 76872086 - A ATRX Frame_Shift_Ins p.L1854Ffs*7 0.34 TCGA-DX-A8BG-01 10 124816293 124816293 A T ACADSB 3'UTR 0.22 TCGA-DX-A8BG-01 10 42907248 42907248 C T CCNYL2 RNA 0.08 TCGA-DX-A8BG-01 10 61788200 61788200 T A ANK3 3'UTR 0.10 TCGA-DX-A8BG-01 10 70404646 70404646 T G TET1 Missense_Mutation p.D720E 0.07 tolerated(1) benign(0.006) TCGA-DX-A8BG-01 11 107975809 107975809 A T CUL5 3'UTR 0.10 TCGA-DX-A8BG-01 11 123479319 123479319 T C GRAMD1B Intron 0.14 TCGA-DX-A8BG-01 11 20141089 20141090 - G NAV2 3'Flank 0.15 TCGA-DX-A8BG-01 11 3023796 3023796 G A CARS Missense_Mutation p.A751V 0.09 tolerated(0.08) benign(0.207) TCGA-DX-A8BG-01 11 43364760 43364760 G A API5 3'Flank 0.14 TCGA-DX-A8BG-01 11 47199923 47199923 G A PACSIN3 Nonsense_Mutation p.R385* 0.10 TCGA-DX-A8BG-01 11 5275523 5275523 T C HBG2 Missense_Mutation p.K105R 0.17 tolerated(1) benign(0.003) TCGA-DX-A8BG-01 11 6740896 6740896 T C GVINP1 RNA 0.17 TCGA-DX-A8BG-01 11 70333178 70333178 C T SHANK2 Missense_Mutation p.V1075I 0.08 tolerated(0.21) benign(0.042) TCGA-DX-A8BG-01 11 89880650 89880650 A T NAALAD2 Missense_Mutation p.N116I 0.16 deleterious(0) probably_damaging(0.977) TCGA-DX-A8BG-01 12 109680379 109680379 C A ACACB Missense_Mutation p.F1720L 0.12 deleterious(0.02) benign(0.013) TCGA-DX-A8BG-01 12 52946513 52946513 C T KRT71 Missense_Mutation p.V117M 0.18 tolerated(0.06) benign(0.133) TCGA-DX-A8BG-01 13 28498562 28498562 C A PDX1 Silent p.I192I 0.18 TCGA-DX-A8BG-01 13 48953787 48953787 G A RB1 Splice_Site p.X463_splice 0.31 TCGA-DX-A8BG-01 14 23895280 23895280 G T MYH7 Missense_Mutation p.D685E 0.16 tolerated(0.47) benign(0.057) TCGA-DX-A8BG-01 14 75375803 75375803 C T RPS6KL1 Splice_Site p.X454_splice 0.07 TCGA-DX-A8BG-01 15 102294423 102294423 C G DNM1P47 RNA 0.27 TCGA-DX-A8BG-01 15 25925105 25925105 G C ATP10A Missense_Mutation p.L1295V 0.09 tolerated(0.1) benign(0.015) TCGA-DX-A8BG-01 15 32393542 32393542 C T CHRNA7 Silent p.L107L 0.42 TCGA-DX-A8BG-01 15 33443505 33443505 A T FMN1 Missense_Mutation p.L648H 0.16 tolerated_low_confidence(0.06) benign(0.146) TCGA-DX-A8BG-01 15 42360908 42360908 C T PLA2G4D 3'UTR 0.13 TCGA-DX-A8BG-01 15 74883555 74883555 C T ARID3B Silent p.L315L 0.11 TCGA-DX-A8BG-01 15 90176146 90176146 C T KIF7 Missense_Mutation p.E934K 0.12 deleterious(0.01) benign(0.066) TCGA-DX-A8BG-01 15 90176221 90176221 C G KIF7 Missense_Mutation p.E909Q 0.15 deleterious(0) possibly_damaging(0.557) TCGA-DX-A8BG-01 16 10274089 10274089 C T GRIN2A Silent p.A60A 0.30 TCGA-DX-A8BG-01 16 57601387 57601387 C T GPR114 Silent p.L235L 0.44 TCGA-DX-A8BG-01 16 67685131 67685131 G A RLTPR Silent p.E742E 0.17 TCGA-DX-A8BG-01 16 83829470 83829470 A G CDH13 3'Flank 0.13 TCGA-DX-A8BG-01 16 84488552 84488552 C T ATP2C2 Silent p.A703A 0.12 TCGA-DX-A8BG-01 16 88496432 88496432 G C ZNF469 Missense_Mutation p.E852Q 0.09 probably_damaging(0.931) TCGA-DX-A8BG-01 16 88496731 88496731 G A ZNF469 Silent p.L951L 0.40 TCGA-DX-A8BG-01 17 10216011 10216011 G A MYH13 Silent p.C1415C 0.11 TCGA-DX-A8BG-01 17 10312798 10312798 G A MYH8 Silent p.N565N 0.05 TCGA-DX-A8BG-01 17 39316506 39316506 G A KRTAP4-4 Silent p.C146C 0.10 TCGA-DX-A8BG-01 17 39521801 39521801 A T KRT33B Missense_Mutation p.V198D 0.10 deleterious(0) probably_damaging(0.949) TCGA-DX-A8BG-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.40 deleterious(0.01) possibly_damaging(0.655) TCGA-DX-A8BG-01 17 48538718 48538718 C T ACSF2 Missense_Mutation p.A147V 0.32 tolerated(0.36) possibly_damaging(0.858) TCGA-DX-A8BG-01 17 48539878 48539878 C T ACSF2 Silent p.L242L 0.12 TCGA-DX-A8BG-01 17 61994853 61994853 C A GH1 Missense_Mutation p.G157V 0.08 deleterious(0.03) benign(0.241) TCGA-DX-A8BG-01 17 70642965 70642965 C A SLC39A11 3'UTR 0.09 TCGA-DX-A8BG-01 17 7810447 7810447 C G CHD3 Missense_Mutation p.T1616S 0.36 benign(0.292) TCGA-DX-A8BG-01 17 79682547 79682547 G T SLC25A10 Missense_Mutation p.V85L 0.12 tolerated(0.88) benign(0.001) TCGA-DX-A8BG-01 18 31320236 31320236 T C ASXL3 Silent p.S956S 0.06 TCGA-DX-A8BG-01 18 67993837 67993837 A C SOCS6 3'UTR 0.64 TCGA-DX-A8BG-01 19 10204202 10204202 G A ANGPTL6 Silent p.L349L 0.09 TCGA-DX-A8BG-01 19 38327603 38327603 G C AC016582.2 RNA 0.11 TCGA-DX-A8BG-01 19 43093685 43093685 G A CEACAM8 Silent p.D209D 0.28 TCGA-DX-A8BG-01 19 44591144 44591144 C T ZNF284 Missense_Mutation p.H505Y 0.10 deleterious(0.02) benign(0.161) TCGA-DX-A8BG-01 19 52937371 52937371 C G ZNF534 Missense_Mutation p.S60C 0.07 deleterious(0.04) benign(0.007) TCGA-DX-A8BG-01 1 109795525 109795525 C T CELSR2 Missense_Mutation p.R942W 0.10 deleterious(0) probably_damaging(0.992) TCGA-DX-A8BG-01 1 12776211 12776211 C T AADACL3 5'UTR 0.10 TCGA-DX-A8BG-01 1 152059969 152059969 G C TCHHL1 Missense_Mutation p.D63E 0.11 deleterious(0.01) possibly_damaging(0.891) TCGA-DX-A8BG-01 1 158581016 158581016 G A SPTA1 3'UTR 0.07 TCGA-DX-A8BG-01 1 161202645 161202645 A G NR1I3 Missense_Mutation p.F167S 0.32 deleterious(0.03) probably_damaging(0.974) TCGA-DX-A8BG-01 1 167381214 167381214 C T POU2F1 Missense_Mutation p.S525F 0.14 tolerated(0.09) unknown(0) TCGA-DX-A8BG-01 1 168168203 168168203 A G TIPRL Missense_Mutation p.K220R 0.21 tolerated(0.17) benign(0.009) TCGA-DX-A8BG-01 1 19448451 19448451 T A UBR4 Missense_Mutation p.Q3291L 0.15 benign(0.443) TCGA-DX-A8BG-01 1 201618518 201618518 G A NAV1 Missense_Mutation p.G241E 0.08 deleterious(0) probably_damaging(1) TCGA-DX-A8BG-01 1 203821780 203821780 C G ZC3H11A 3'UTR 0.07 TCGA-DX-A8BG-01 1 203822238 203822238 C T ZC3H11A 3'UTR 0.16 TCGA-DX-A8BG-01 1 203822379 203822379 C G ZC3H11A 3'UTR 0.08 TCGA-DX-A8BG-01 1 203822458 203822458 C G ZC3H11A 3'UTR 0.11 TCGA-DX-A8BG-01 1 203822476 203822476 C T ZC3H11A 3'UTR 0.12 TCGA-DX-A8BG-01 1 203823106 203823106 C G ZC3H11A 3'UTR 0.09 TCGA-DX-A8BG-01 1 20474783 20474783 C A PLA2G2F Silent p.G175G 0.31 TCGA-DX-A8BG-01 1 234519488 234519488 G C COA6 Missense_Mutation p.R101T 0.12 deleterious(0) probably_damaging(1) TCGA-DX-A8BG-01 1 234519493 234519493 G A COA6 Missense_Mutation p.D103N 0.13 deleterious(0.03) probably_damaging(1) TCGA-DX-A8BG-01 1 234519639 234519639 G T COA6 3'UTR 0.18 TCGA-DX-A8BG-01 1 237527674 237527674 T A RYR2 Splice_Site p.X103_splice 0.15 TCGA-DX-A8BG-01 1 240492670 240492670 T A FMN2 Missense_Mutation p.F1447I 0.19 probably_damaging(0.986) TCGA-DX-A8BG-01 1 248487708 248487708 G C OR2M7 Missense_Mutation p.L55V 0.09 deleterious(0) probably_damaging(0.94) TCGA-DX-A8BG-01 1 47013251 47013251 A T KNCN 3'UTR 0.13 TCGA-DX-A8BG-01 1 60302603 60302603 A C HOOK1 Missense_Mutation p.Q178P 0.11 tolerated(0.21) possibly_damaging(0.567) TCGA-DX-A8BG-01 1 70339283 70339283 C T LRRC7 Intron 0.11 TCGA-DX-A8BG-01 21 45877624 45877624 C G LRRC3 3'UTR 0.17 TCGA-DX-A8BG-01 22 19023962 19023962 T G DGCR2 3'UTR 0.11 TCGA-DX-A8BG-01 22 20759979 20759979 C A ZNF74 Missense_Mutation p.A219E 0.14 tolerated(0.53) benign(0.086) TCGA-DX-A8BG-01 22 37334252 37334252 C G CSF2RB Missense_Mutation p.A801G 0.14 tolerated(0.21) benign(0.012) TCGA-DX-A8BG-01 2 120979924 120979924 T C TMEM185B Missense_Mutation p.H210R 0.09 tolerated(0.19) possibly_damaging(0.891) TCGA-DX-A8BG-01 2 131674641 131674641 A G ARHGEF4 Intron 0.11 TCGA-DX-A8BG-01 2 239054412 239054412 G A KLHL30 Missense_Mutation p.M363I 0.11 deleterious(0) benign(0.11) TCGA-DX-A8BG-01 2 30987063 30987063 G T CAPN13 Missense_Mutation p.L212M 0.17 deleterious(0.04) probably_damaging(0.955) TCGA-DX-A8BG-01 2 54153144 54153144 C T PSME4 Missense_Mutation p.C537Y 0.19 deleterious(0) probably_damaging(0.91) TCGA-DX-A8BG-01 2 86441653 86441653 G T REEP1 3'UTR 0.49 TCGA-DX-A8BG-01 3 126633574 126633574 A G CHCHD6 Missense_Mutation p.K183E 0.13 deleterious(0.01) possibly_damaging(0.897) TCGA-DX-A8BG-01 3 186293640 186293640 T C DNAJB11 Silent p.D79D 0.05 TCGA-DX-A8BG-01 4 155526181 155526181 A C FGG Nonsense_Mutation p.Y389* 0.12 TCGA-DX-A8BG-01 4 22517284 22517284 C A GPR125 Missense_Mutation p.G42C 0.09 tolerated(0.1) unknown(0) TCGA-DX-A8BG-01 4 71510589 71510589 C T ENAM 3'UTR 0.11 TCGA-DX-A8BG-01 5 159820678 159820678 A G C5orf54 3'UTR 0.13 TCGA-DX-A8BG-01 5 167654985 167654985 C T TENM2 Silent p.S1790S 0.14 TCGA-DX-A8BG-01 6 10586804 10586804 C A GCNT2 Intron 0.25 TCGA-DX-A8BG-01 6 31602954 31602954 G A PRRC2A Missense_Mutation p.E1736K 0.12 unknown(0) TCGA-DX-A8BG-01 6 31603240 31603240 G A PRRC2A Missense_Mutation p.E1791K 0.11 unknown(0) TCGA-DX-A8BG-01 6 31605238 31605238 G A PRRC2A Missense_Mutation p.A2117T 0.11 unknown(0) TCGA-DX-A8BG-01 6 44336210 44336210 A C SPATS1 Silent p.S223S 0.10 TCGA-DX-A8BG-01 6 89320974 89320974 A G RNGTT 3'UTR 0.10 TCGA-DX-A8BG-01 7 121616308 121616308 T C PTPRZ1 Missense_Mutation p.S180P 0.28 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BG-01 7 121733109 121733109 C A AASS Nonsense_Mutation p.E587* 0.09 TCGA-DX-A8BG-01 7 121733110 121733110 C A AASS Missense_Mutation p.L586F 0.07 deleterious(0.04) probably_damaging(0.974) TCGA-DX-A8BG-01 7 138916591 138916591 C A UBN2 Silent p.R121R 0.12 TCGA-DX-A8BG-01 7 148705263 148705263 C A PDIA4 Missense_Mutation p.M373I 0.13 tolerated(0.2) benign(0) TCGA-DX-A8BG-01 7 148705272 148705272 C A PDIA4 Silent p.R370R 0.12 TCGA-DX-A8BG-01 7 149506541 149506541 T A SSPO RNA 0.13 TCGA-DX-A8BG-01 7 30496637 30496637 C T NOD1 5'UTR 0.15 TCGA-DX-A8BG-01 7 77764399 77764399 G A MAGI2 Silent p.D990D 0.18 TCGA-DX-A8BG-01 8 145617202 145617202 C G ADCK5 Missense_Mutation p.S359W 0.50 deleterious(0) possibly_damaging(0.898) TCGA-DX-A8BG-01 8 23115547 23115547 T A CHMP7 Missense_Mutation p.C265S 0.34 tolerated(0.1) benign(0.047) TCGA-DX-A8BG-01 8 51621506 51621506 A G SNTG1 Missense_Mutation p.T418A 0.10 tolerated(0.31) benign(0.001) TCGA-DX-A8BG-01 9 117792635 117792635 A T TNC Missense_Mutation p.N1990K 0.09 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BG-01 9 120475402 120475402 G A TLR4 Nonsense_Mutation p.W332* 0.15 TCGA-DX-A8BG-01 9 126144593 126144593 C T DENND1A Silent p.P716P 0.21 TCGA-DX-A8BG-01 9 131151745 131151745 G A URM1 Missense_Mutation p.E132K 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.801) TCGA-DX-A8BG-01 9 33548671 33548671 C T ANKRD18B Nonsense_Mutation p.R567* 0.08 TCGA-DX-A8BG-01 9 36966611 36966611 G A PAX5 Missense_Mutation p.R239C 0.13 tolerated(0.3) benign(0.1) TCGA-DX-A8BG-01 9 39099994 39099994 C T CNTNAP3 Missense_Mutation p.R970H 0.14 tolerated(1) benign(0.002) TCGA-DX-A8BG-01 9 8317538 8317538 C T PTPRD 3'UTR 0.10 TCGA-DX-A8BG-01 X 134166341 134166341 C T FAM127A 5'UTR 0.06 TCGA-DX-A8BG-01 X 18257826 18257826 A C SCML2 3'UTR 0.09 TCGA-DX-A8BG-01 X 18616676 18616676 C G CDKL5 Missense_Mutation p.P307R 0.12 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-DX-A8BG-01 X 32486827 32486827 C G DMD Missense_Mutation p.A984P 0.29 probably_damaging(0.984) TCGA-DX-A8BG-01 X 38665652 38665652 G C MID1IP1 3'UTR 0.19 TCGA-DX-A8BG-01 X 48317079 48317079 C T SLC38A5 3'UTR 0.17 TCGA-DX-A8BG-01 X 71359470 71359470 C G NHSL2 Missense_Mutation p.S691C 0.09 deleterious(0.04) probably_damaging(0.988) TCGA-DX-A8BG-01 X 9905384 9905384 G C SHROOM2 Missense_Mutation p.Q1266H 0.18 tolerated(0.07) benign(0.001) TCGA-DX-A8BH-01 10 106209901 106209901 A G CCDC147 Missense_Mutation p.N817D 0.26 tolerated(0.4) benign(0.002) TCGA-DX-A8BH-01 10 112653894 112653894 G T PDCD4 Nonsense_Mutation p.E346* 0.19 TCGA-DX-A8BH-01 10 43615601 43615601 G A RET Missense_Mutation p.G894S 0.10 deleterious(0) probably_damaging(1) TCGA-DX-A8BH-01 10 71158528 71158528 G A HK1 Silent p.L855L 0.10 TCGA-DX-A8BH-01 11 118454689 118454689 A G ARCN1 Missense_Mutation p.I205V 0.12 tolerated(0.71) benign(0.001) TCGA-DX-A8BH-01 11 130060353 130060353 C T ST14 Silent p.S213S 0.15 TCGA-DX-A8BH-01 11 22271871 22271871 G T ANO5 Missense_Mutation p.A323S 0.27 tolerated(0.45) benign(0.088) TCGA-DX-A8BH-01 11 3038427 3038427 T C CARS Missense_Mutation p.N609S 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-DX-A8BH-01 11 30915815 30915815 C A DCDC1 Nonsense_Mutation p.E1625* 0.08 TCGA-DX-A8BH-01 11 48510958 48510958 G T OR4A47 Missense_Mutation p.C205F 0.18 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DX-A8BH-01 11 5254013 5254013 G T HBD 3'Flank 0.16 TCGA-DX-A8BH-01 11 60164142 60164142 C T MS4A14 Missense_Mutation p.H31Y 0.14 deleterious(0.04) benign(0.345) TCGA-DX-A8BH-01 11 62105471 62105471 C T ASRGL1 Missense_Mutation p.H8Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-DX-A8BH-01 11 88583213 88583213 C G GRM5 Missense_Mutation p.D258H 0.23 deleterious(0) probably_damaging(0.985) TCGA-DX-A8BH-01 11 92532352 92532352 G A FAT3 Missense_Mutation p.R2058H 0.19 probably_damaging(0.996) TCGA-DX-A8BH-01 11 93583669 93583669 G A VSTM5 5'UTR 0.35 TCGA-DX-A8BH-01 12 122284821 122284821 C T HPD Missense_Mutation p.G260R 0.30 tolerated(0.05) probably_damaging(0.968) TCGA-DX-A8BH-01 12 65225912 65225912 C T TBC1D30 Missense_Mutation p.T141I 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-DX-A8BH-01 12 96059706 96059706 C G NTN4 Missense_Mutation p.V544L 0.47 tolerated(0.06) probably_damaging(1) TCGA-DX-A8BH-01 13 50051139 50051139 C T SETDB2 Missense_Mutation p.T290I 0.15 tolerated(0.18) benign(0.038) TCGA-DX-A8BH-01 14 24538169 24538169 G A LRRC16B Missense_Mutation p.V1326I 0.30 tolerated_low_confidence(0.51) unknown(0) TCGA-DX-A8BH-01 14 54944529 54944529 A T GMFB 3'UTR 0.23 TCGA-DX-A8BH-01 14 65242028 65242028 G A SPTB Nonsense_Mutation p.Q1553* 0.06 TCGA-DX-A8BH-01 14 96792222 96792222 T G ATG2B Missense_Mutation p.H734P 0.32 tolerated(0.44) probably_damaging(0.948) TCGA-DX-A8BH-01 16 30680597 30680598 - T FBRS Frame_Shift_Ins p.E860* 0.16 TCGA-DX-A8BH-01 16 31439619 31439619 G A COX6A2 Missense_Mutation p.R10W 0.08 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BH-01 16 7760642 7760642 G T RBFOX1 Missense_Mutation p.L384F 0.16 tolerated_low_confidence(0.15) benign(0.008) TCGA-DX-A8BH-01 17 48669121 48669121 C T CACNA1G Silent p.F887F 0.09 TCGA-DX-A8BH-01 17 68172571 68172571 C T KCNJ2 3'UTR 0.30 TCGA-DX-A8BH-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.41 TCGA-DX-A8BH-01 17 76506478 76506478 C A DNAH17 Silent p.S1404S 0.32 TCGA-DX-A8BH-01 18 47796413 47796413 C G MBD1 Intron 0.21 TCGA-DX-A8BH-01 18 50450188 50450188 G C DCC Missense_Mutation p.S270T 0.07 tolerated(0.7) benign(0.001) TCGA-DX-A8BH-01 19 6833926 6833926 T A VAV1 Missense_Mutation p.L580Q 0.10 tolerated(0.61) benign(0.001) TCGA-DX-A8BH-01 1 101007156 101007156 C T GPR88 3'UTR 0.17 TCGA-DX-A8BH-01 1 108918849 108918849 G A NBPF6 Intron 0.16 TCGA-DX-A8BH-01 1 115168618 115168618 G A DENND2C 5'UTR 0.36 TCGA-DX-A8BH-01 1 155159745 155159745 G A MUC1 Missense_Mutation p.R437C 0.18 deleterious(0) probably_damaging(0.988) TCGA-DX-A8BH-01 1 207095211 207095211 G C FAIM3 5'UTR 0.28 TCGA-DX-A8BH-01 1 232561478 232561478 C T SIPA1L2 Missense_Mutation p.R1496K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-DX-A8BH-01 1 37325619 37325619 C T GRIK3 Splice_Site p.X263_splice 0.20 TCGA-DX-A8BH-01 1 42046088 42046088 T A HIVEP3 Nonsense_Mutation p.K1461* 0.17 TCGA-DX-A8BH-01 1 86913240 86913240 C T CLCA2 Missense_Mutation p.A588V 0.11 tolerated(0.7) benign(0.094) TCGA-DX-A8BH-01 20 42271199 42271199 C T IFT52 Nonsense_Mutation p.Q401* 0.31 TCGA-DX-A8BH-01 20 44441439 44441439 A G UBE2C Intron 0.15 TCGA-DX-A8BH-01 20 61637484 61637484 C T BHLHE23 Missense_Mutation p.A199T 0.40 tolerated(0.07) benign(0.003) TCGA-DX-A8BH-01 20 62055553 62055553 G T KCNQ2 Missense_Mutation p.D408E 0.21 tolerated(1) benign(0.001) TCGA-DX-A8BH-01 21 41385110 41385110 G T DSCAM Missense_Mutation p.Q1964K 0.28 tolerated_low_confidence(0.06) benign(0.007) TCGA-DX-A8BH-01 21 46067079 46067079 C A KRTAP10-11 Missense_Mutation p.S235Y 0.27 deleterious(0) possibly_damaging(0.86) TCGA-DX-A8BH-01 22 30218426 30218426 C G ASCC2 Missense_Mutation p.G147R 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-DX-A8BH-01 22 51169349 51169349 G T SHANK3 Missense_Mutation p.G1618V 0.27 benign(0.012) TCGA-DX-A8BH-01 2 10580692 10580692 A G ODC1 3'UTR 0.18 TCGA-DX-A8BH-01 2 118865950 118865950 A T INSIG2 3'UTR 0.20 TCGA-DX-A8BH-01 2 135738492 135738492 C A MAP3K19 Missense_Mutation p.M1273I 0.14 tolerated(0.38) benign(0.049) TCGA-DX-A8BH-01 2 142567933 142567933 G A LRP1B Silent p.H40H 0.35 TCGA-DX-A8BH-01 2 160980365 160980365 G C ITGB6 Missense_Mutation p.Q640E 0.32 tolerated(1) benign(0.001) TCGA-DX-A8BH-01 2 169764394 169764394 C A G6PC2 Missense_Mutation p.S291R 0.20 tolerated(0.2) benign(0.004) TCGA-DX-A8BH-01 2 177055368 177055369 - T HOXD1 3'UTR 0.31 TCGA-DX-A8BH-01 2 179584151 179584151 C A TTN Missense_Mutation p.R7989L 0.18 TCGA-DX-A8BH-01 2 219646890 219646890 C A CYP27A1 5'UTR 0.25 TCGA-DX-A8BH-01 2 5837951 5837951 A C SOX11 3'UTR 0.21 TCGA-DX-A8BH-01 2 5838064 5838064 C G SOX11 3'UTR 0.23 TCGA-DX-A8BH-01 2 84518513 84518513 C A FUNDC2P2 RNA 0.41 TCGA-DX-A8BH-01 3 164906374 164906374 G - SLITRK3 Frame_Shift_Del p.Q749Kfs*44 0.32 TCGA-DX-A8BH-01 4 141294859 141294859 C A SCOC Missense_Mutation p.P57T 0.25 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-DX-A8BH-01 4 168155352 168155352 G T SPOCK3 Intron 0.16 TCGA-DX-A8BH-01 4 175564926 175564926 C A GLRA3 3'UTR 0.13 TCGA-DX-A8BH-01 4 7780398 7780398 G A AFAP1 Intron 0.20 TCGA-DX-A8BH-01 4 88537344 88537344 G A DSPP Missense_Mutation p.S1177N 0.17 unknown(0) TCGA-DX-A8BH-01 5 56218636 56218636 C T MIER3 3'UTR 0.14 TCGA-DX-A8BH-01 5 93076580 93076580 C T POU5F2 Silent p.Q230Q 0.11 TCGA-DX-A8BH-01 6 116288797 116288797 C T FRK Missense_Mutation p.R239Q 0.16 tolerated(0.08) benign(0.067) TCGA-DX-A8BH-01 6 131904593 131904593 G C ARG1 Missense_Mutation p.R263T 0.12 deleterious(0) probably_damaging(0.972) TCGA-DX-A8BH-01 6 3019934 3019934 C G NQO2 3'UTR 0.30 TCGA-DX-A8BH-01 6 30632764 30632764 C A DHX16 Silent p.P377P 0.09 TCGA-DX-A8BH-01 6 3225063 3225063 G T TUBB2B Silent p.S420S 0.16 TCGA-DX-A8BH-01 6 38813373 38813373 G A DNAH8 Silent p.K1406K 0.32 TCGA-DX-A8BH-01 6 52270190 52270190 T G PAQR8 3'UTR 0.41 TCGA-DX-A8BH-01 7 25194754 25194754 G A C7orf31 Silent p.G157G 0.28 TCGA-DX-A8BH-01 7 50070806 50070806 C G ZPBP Missense_Mutation p.Q196H 0.14 deleterious(0.01) probably_damaging(0.963) TCGA-DX-A8BH-01 7 83739786 83739786 C T SEMA3A Silent p.E151E 0.15 TCGA-DX-A8BH-01 8 139323106 139323106 A C FAM135B Missense_Mutation p.S45R 0.12 tolerated(0.36) benign(0.012) TCGA-DX-A8BH-01 8 22458468 22458468 C T AC037459.4 Silent p.D107D 0.25 TCGA-DX-A8BH-01 8 24774766 24774766 G T NEFM Missense_Mutation p.K466N 0.28 deleterious(0.01) unknown(0) TCGA-DX-A8BH-01 8 41788202 41788202 G A KAT6A 3'UTR 0.24 TCGA-DX-A8BH-01 8 56922483 56922483 C T LYN Silent p.D451D 0.47 TCGA-DX-A8BH-01 9 134393916 134393916 G T POMT1 Missense_Mutation p.V475F 0.14 deleterious(0.01) possibly_damaging(0.795) TCGA-DX-A8BH-01 9 135927532 135927532 C T GTF3C5 Missense_Mutation p.P285L 0.33 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BH-01 9 66457322 66457322 G C RP11-262H14.1 RNA 0.63 TCGA-DX-A8BH-01 9 94495693 94495693 A G ROR2 Silent p.S216S 0.33 TCGA-DX-A8BH-01 X 101822963 101822963 G A NXF4 RNA 0.42 TCGA-DX-A8BH-01 X 79699000 79699000 T C FAM46D Missense_Mutation p.I321T 0.25 tolerated(1) benign(0) TCGA-DX-A8BH-01 X 86071071 86071071 T A DACH2 Missense_Mutation p.N573K 0.06 tolerated(0.18) benign(0.01) TCGA-DX-A8BJ-01 10 28527621 28527621 C T MPP7 5'UTR 0.15 TCGA-DX-A8BJ-01 10 75156285 75156285 G C ANXA7 Missense_Mutation p.P143A 0.64 tolerated(0.08) benign(0.027) TCGA-DX-A8BJ-01 10 96109108 96109134 TCACAGCTTCACAACACATTTCAGATA - NOC3L In_Frame_Del p.I377_V385del 0.22 TCGA-DX-A8BJ-01 11 1151677 1151677 T C MUC5AC Silent p.A17A 0.05 TCGA-DX-A8BJ-01 11 118842632 118842632 G A FOXR1 5'UTR 0.17 TCGA-DX-A8BJ-01 11 123900388 123900388 C T OR10G8 Missense_Mutation p.A20V 0.90 tolerated(0.14) benign(0.001) TCGA-DX-A8BJ-01 11 125514032 125514032 G T CHEK1 Missense_Mutation p.G324C 0.42 deleterious(0.02) possibly_damaging(0.67) TCGA-DX-A8BJ-01 11 47364235 47364235 G A MYBPC3 Silent p.D506D 0.10 TCGA-DX-A8BJ-01 11 55872824 55872824 C A OR8H2 Missense_Mutation p.F102L 0.42 deleterious(0.03) benign(0.001) TCGA-DX-A8BJ-01 11 66193671 66193671 G A NPAS4 3'UTR 0.11 TCGA-DX-A8BJ-01 11 86521985 86521985 T C PRSS23 3'UTR 0.23 TCGA-DX-A8BJ-01 12 130907024 130907024 G T RIMBP2 Missense_Mutation p.S815Y 0.33 tolerated(0.2) benign(0.14) TCGA-DX-A8BJ-01 12 15102758 15102758 T C ARHGDIB Silent p.G81G 0.07 TCGA-DX-A8BJ-01 12 39079417 39079417 A G CPNE8 Silent p.N382N 0.08 TCGA-DX-A8BJ-01 12 42836472 42836472 C - PPHLN1 Frame_Shift_Del p.P353Lfs*2 0.12 TCGA-DX-A8BJ-01 12 52771877 52771877 C T KRT84 Missense_Mutation p.G582S 0.26 tolerated_low_confidence(0.28) unknown(0) TCGA-DX-A8BJ-01 12 57587731 57587731 C G LRP1 Missense_Mutation p.I2618M 0.20 probably_damaging(0.996) TCGA-DX-A8BJ-01 12 6561502 6561502 C T TAPBPL Intron 0.14 TCGA-DX-A8BJ-01 12 8387020 8387020 G A RP11-266K4.9 5'Flank 0.12 TCGA-DX-A8BJ-01 13 46287374 46287374 G A SPERT Missense_Mutation p.A72T 0.67 tolerated_low_confidence(0.11) benign(0.032) TCGA-DX-A8BJ-01 15 22864212 22864212 A T TUBGCP5 Missense_Mutation p.R724W 0.15 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BJ-01 15 42709441 42709441 G C ZNF106 3'UTR 0.16 TCGA-DX-A8BJ-01 16 21030952 21030952 C A DNAH3 Nonsense_Mutation p.E2006* 0.21 TCGA-DX-A8BJ-01 16 3198339 3198339 G T CASP16 Missense_Mutation p.G92C 0.18 deleterious(0.01) possibly_damaging(0.75) TCGA-DX-A8BJ-01 16 830643 830643 G T MSLNL Missense_Mutation p.H120N 0.67 possibly_damaging(0.607) TCGA-DX-A8BJ-01 17 10405167 10405167 T G MYH1 Missense_Mutation p.K1058T 0.09 deleterious(0.02) possibly_damaging(0.881) TCGA-DX-A8BJ-01 17 3343320 3343320 G C SPATA22 3'UTR 0.05 TCGA-DX-A8BJ-01 17 41958094 41958094 A G MPP2 Missense_Mutation p.M372T 0.40 tolerated(0.6) benign(0.007) TCGA-DX-A8BJ-01 17 66877336 66877336 T C ABCA8 Silent p.L1281L 0.37 TCGA-DX-A8BJ-01 17 79226885 79226885 G A SLC38A10 Missense_Mutation p.R482C 0.67 deleterious(0.01) benign(0.033) TCGA-DX-A8BJ-01 18 2740716 2740727 ATCAGTACGGAA - SMCHD1 In_Frame_Del p.Y1179_Q1182del 0.66 TCGA-DX-A8BJ-01 19 14785593 14785593 C T EMR3 5'UTR 0.40 TCGA-DX-A8BJ-01 19 40396215 40396215 G A FCGBP Silent p.H2394H 0.27 TCGA-DX-A8BJ-01 19 4523577 4523577 G A PLIN5 Missense_Mutation p.P452L 0.30 tolerated_low_confidence(0.14) benign(0.001) TCGA-DX-A8BJ-01 19 53270053 53270053 G A ZNF600 Missense_Mutation p.S319L 0.08 tolerated(0.33) benign(0.002) TCGA-DX-A8BJ-01 19 53270247 53270247 G A ZNF600 Silent p.I254I 0.09 TCGA-DX-A8BJ-01 19 53270275 53270275 G A ZNF600 Missense_Mutation p.S245F 0.09 deleterious(0) benign(0.273) TCGA-DX-A8BJ-01 19 53270527 53270527 G A ZNF600 Missense_Mutation p.S161F 0.09 deleterious(0.01) possibly_damaging(0.823) TCGA-DX-A8BJ-01 19 53270569 53270569 G A ZNF600 Missense_Mutation p.S147L 0.08 tolerated(0.06) probably_damaging(0.977) TCGA-DX-A8BJ-01 19 58967100 58967100 C G ZNF324B Missense_Mutation p.S263R 0.14 deleterious(0.01) possibly_damaging(0.641) TCGA-DX-A8BJ-01 1 153614745 153614745 G C CHTOP Missense_Mutation p.K81N 0.22 deleterious(0) benign(0.403) TCGA-DX-A8BJ-01 1 1607527 1607527 G A SLC35E2B Missense_Mutation p.T145M 0.16 deleterious(0.03) possibly_damaging(0.689) TCGA-DX-A8BJ-01 1 175348838 175348838 G A TNR Missense_Mutation p.R605C 0.78 deleterious(0.02) possibly_damaging(0.812) TCGA-DX-A8BJ-01 1 224553606 224553606 A G CNIH4 Missense_Mutation p.H55R 0.82 deleterious(0.02) possibly_damaging(0.529) TCGA-DX-A8BJ-01 1 247615033 247615033 C A OR2B11 Missense_Mutation p.Q84H 0.62 deleterious(0.03) probably_damaging(0.986) TCGA-DX-A8BJ-01 1 26189660 26189660 C T PAQR7 Missense_Mutation p.R224H 0.20 deleterious(0) probably_damaging(0.991) TCGA-DX-A8BJ-01 1 57341755 57341755 C T C8A Missense_Mutation p.L113F 0.10 deleterious(0.02) possibly_damaging(0.859) TCGA-DX-A8BJ-01 1 6530806 6530806 C T PLEKHG5 Missense_Mutation p.V590I 0.62 tolerated(0.65) benign(0.005) TCGA-DX-A8BJ-01 1 76007163 76007163 G A SLC44A5 5'UTR 0.07 TCGA-DX-A8BJ-01 1 91177964 91177964 C A BARHL2 Missense_Mutation p.V357L 0.06 tolerated(0.1) unknown(0) TCGA-DX-A8BJ-01 20 30782669 30782669 C T PLAGL2 3'UTR 0.33 TCGA-DX-A8BJ-01 20 31676818 31676818 G A BPIFB4 Missense_Mutation p.D325N 0.27 tolerated(0.83) benign(0.001) TCGA-DX-A8BJ-01 21 15746041 15746041 G A HSPA13 Missense_Mutation p.T438M 0.29 tolerated(0.23) benign(0.108) TCGA-DX-A8BJ-01 22 32498162 32498162 G A SLC5A1 Missense_Mutation p.A535T 0.82 tolerated(0.51) benign(0.002) TCGA-DX-A8BJ-01 22 50658656 50658656 G T TUBGCP6 Intron 0.17 TCGA-DX-A8BJ-01 2 130900293 130900293 T C CCDC74B Intron 0.14 TCGA-DX-A8BJ-01 2 131976476 131976476 C G POTEE Missense_Mutation p.N167K 0.04 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-DX-A8BJ-01 2 179365893 179365893 A G PLEKHA3 Silent p.E255E 0.61 TCGA-DX-A8BJ-01 2 228221978 228221978 G A MFF 3'UTR 0.10 TCGA-DX-A8BJ-01 2 86310254 86310254 T C POLR1A Silent p.L256L 0.21 TCGA-DX-A8BJ-01 3 122002847 122002847 G A CASR Silent p.P692P 0.80 TCGA-DX-A8BJ-01 3 154055902 154055902 G A GPR149 Silent p.S594S 0.23 TCGA-DX-A8BJ-01 3 36873669 36873669 G A TRANK1 Missense_Mutation p.R2425C 0.21 deleterious(0.01) benign(0.082) TCGA-DX-A8BJ-01 3 58157974 58157974 G A FLNB 3'Flank 0.12 TCGA-DX-A8BJ-01 3 62499312 62499312 C T CADPS Intron 0.46 TCGA-DX-A8BJ-01 4 109094633 109094633 T - LEF1-AS1 RNA 0.10 TCGA-DX-A8BJ-01 4 129012526 129012526 A T LARP1B Missense_Mutation p.Y176F 0.12 tolerated(0.12) benign(0.081) TCGA-DX-A8BJ-01 4 177094499 177094499 T G WDR17 Nonsense_Mutation p.L1148* 0.08 TCGA-DX-A8BJ-01 4 183268045 183268045 A G TENM3 Silent p.T158T 0.89 TCGA-DX-A8BJ-01 4 248151 248151 T G ZNF876P RNA 0.48 TCGA-DX-A8BJ-01 4 69535762 69535762 G A UGT2B15 Missense_Mutation p.P192L 0.18 tolerated(0.07) benign(0.424) TCGA-DX-A8BJ-01 4 95197501 95197501 C T SMARCAD1 Missense_Mutation p.A607V 0.06 tolerated(0.12) benign(0.081) TCGA-DX-A8BJ-01 4 99313196 99313205 TGTGTCTTGT - RAP1GDS1 Frame_Shift_Del p.C203Hfs*5 0.13 TCGA-DX-A8BJ-01 5 157230696 157230696 T A CLINT1 Missense_Mutation p.D325V 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-DX-A8BJ-01 6 30917384 30917384 A G DPCR1 Silent p.T381T 0.10 TCGA-DX-A8BJ-01 6 35205748 35205748 C A SCUBE3 Missense_Mutation p.T261N 0.89 deleterious(0.04) benign(0.063) TCGA-DX-A8BJ-01 6 50812304 50812304 A C TFAP2B 3'UTR 0.06 TCGA-DX-A8BJ-01 7 121943846 121943846 C A FEZF1 Missense_Mutation p.V216L 0.16 tolerated(0.15) benign(0.192) TCGA-DX-A8BJ-01 7 129845200 129845224 CCCGAAAACGCACCATGTCCTCTGG - TMEM209 Splice_Site 0.29 TCGA-DX-A8BJ-01 7 30491184 30491184 G A NOD1 Missense_Mutation p.R617C 0.12 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BJ-01 7 35006559 35006559 C A DPY19L1 Missense_Mutation p.V274F 0.85 deleterious(0.02) possibly_damaging(0.835) TCGA-DX-A8BJ-01 7 38356919 38356919 C A TRGV9 Missense_Mutation p.G22V 0.12 tolerated(0.38) benign(0.01) TCGA-DX-A8BJ-01 7 8792051 8792051 C T NXPH1 3'UTR 0.11 TCGA-DX-A8BJ-01 7 98569420 98569420 A G TRRAP Splice_Site p.X2558_splice 0.16 TCGA-DX-A8BJ-01 8 116422708 116422708 T C TRPS1 3'UTR 0.11 TCGA-DX-A8BJ-01 8 145154939 145154939 G A SHARPIN Missense_Mutation p.P137L 0.72 deleterious(0.04) benign(0.037) TCGA-DX-A8BJ-01 8 18393462 18393462 G A PSD3 Missense_Mutation p.R979C 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A8BJ-01 8 85800008 85800008 G A RALYL Silent p.E298E 0.27 TCGA-DX-A8BJ-01 9 102590467 102590467 C T NR4A3 Missense_Mutation p.T59M 0.74 deleterious(0.04) benign(0.088) TCGA-DX-A8BJ-01 9 113217882 113217882 A C SVEP1 Missense_Mutation p.S1259A 0.15 benign(0.002) TCGA-DX-A8BJ-01 9 96051076 96051076 C T WNK2 Missense_Mutation p.A1384V 0.07 unknown(0) TCGA-DX-A8BJ-01 X 103411373 103411373 G T FAM199X 5'UTR 0.57 TCGA-DX-A8BJ-01 X 150840063 150840063 C T PASD1 Missense_Mutation p.R417C 0.80 tolerated(0.11) benign(0.002) TCGA-DX-A8BJ-01 X 50055541 50055541 C T CCNB3 Missense_Mutation p.T1111I 0.22 tolerated(0.25) benign(0.032) TCGA-DX-A8BK-01 11 1856592 1856592 G T SYT8 Missense_Mutation p.C68F 0.17 deleterious(0.02) benign(0.401) TCGA-DX-A8BK-01 11 59860903 59860903 A G MS4A2 Missense_Mutation p.S137G 0.37 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BK-01 12 130921759 130921759 G A RIMBP2 Silent p.G561G 0.16 TCGA-DX-A8BK-01 12 6671112 6671112 A T NOP2 Missense_Mutation p.L368Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BK-01 13 113473690 113473690 G A ATP11A Missense_Mutation p.E215K 0.23 deleterious(0.03) possibly_damaging(0.732) TCGA-DX-A8BK-01 14 106170733 106170733 G - IGHA1 3'Flank 0.17 TCGA-DX-A8BK-01 14 65234023 65234023 A T SPTB Silent p.T2089T 0.12 TCGA-DX-A8BK-01 15 45394058 45394058 C A DUOX2 Silent p.L928L 0.21 TCGA-DX-A8BK-01 15 45400250 45400250 C G DUOX2 Missense_Mutation p.R523S 0.08 tolerated(0.08) benign(0.446) TCGA-DX-A8BK-01 16 1812437 1812437 G A MAPK8IP3 Missense_Mutation p.R541Q 0.09 deleterious(0.02) probably_damaging(0.976) TCGA-DX-A8BK-01 17 5436697 5436697 C T NLRP1 Silent p.A1020A 0.60 TCGA-DX-A8BK-01 17 7578290 7578290 C G TP53 Splice_Site p.X187_splice 0.67 TCGA-DX-A8BK-01 18 1276028 1276028 T C LINC00470 RNA 0.13 TCGA-DX-A8BK-01 19 35551321 35551321 G A HPN Silent p.P175P 0.35 TCGA-DX-A8BK-01 19 51140536 51140536 G T SYT3 Silent p.R45R 0.22 TCGA-DX-A8BK-01 1 17322893 17322893 G A ATP13A2 Missense_Mutation p.L432F 0.27 deleterious(0) probably_damaging(1) TCGA-DX-A8BK-01 1 22169884 22169885 AG - HSPG2 Frame_Shift_Del p.S2888Wfs*23 0.15 TCGA-DX-A8BK-01 1 44466534 44466534 G A SLC6A9 Missense_Mutation p.R554W 0.28 deleterious(0) probably_damaging(0.932) TCGA-DX-A8BK-01 1 63097073 63097073 T C DOCK7 Missense_Mutation p.K374E 0.23 tolerated(0.14) benign(0.259) TCGA-DX-A8BK-01 1 78031789 78031789 A T ZZZ3 Missense_Mutation p.D848E 0.32 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BK-01 22 38894492 38894492 G A DDX17 Missense_Mutation p.R209W 0.24 deleterious(0) probably_damaging(0.968) TCGA-DX-A8BK-01 2 166246020 166246020 C T SCN2A Missense_Mutation p.R1902C 0.24 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BK-01 3 121613302 121613302 G A SLC15A2 5'UTR 0.18 TCGA-DX-A8BK-01 3 12458565 12458565 C G PPARG Silent p.P394P 0.12 TCGA-DX-A8BK-01 3 133109090 133109090 G A TMEM108 Missense_Mutation p.S506N 0.12 deleterious(0) benign(0.405) TCGA-DX-A8BK-01 5 122930751 122930751 G A CSNK1G3 Missense_Mutation p.A369T 0.12 tolerated(0.28) benign(0.007) TCGA-DX-A8BK-01 5 133295199 133295199 G C C5orf15 Missense_Mutation p.H218D 0.32 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BK-01 5 169720342 169720342 T A LCP2 Missense_Mutation p.K38M 0.30 deleterious(0) probably_damaging(0.941) TCGA-DX-A8BK-01 5 1879802 1879802 C T IRX4 Missense_Mutation p.M184I 0.20 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BK-01 6 69640448 69640448 T A BAI3 Intron 0.19 TCGA-DX-A8BK-01 6 80737669 80737669 C T TTK Missense_Mutation p.P488S 0.11 tolerated(0.51) benign(0.004) TCGA-DX-A8BK-01 7 137563914 137563915 - A CREB3L2 3'UTR 0.24 TCGA-DX-A8BK-01 7 154379599 154379599 G T DPP6 Intron 0.18 TCGA-DX-A8BK-01 8 91094268 91094268 T C CALB1 Missense_Mutation p.K48E 0.33 tolerated(0.33) benign(0.262) TCGA-DX-A8BK-01 8 95556150 95556150 C A KIAA1429 Silent p.V28V 0.15 TCGA-DX-A8BK-01 9 13205963 13205963 C T MPDZ Missense_Mutation p.V476I 0.31 tolerated(0.23) benign(0.005) TCGA-DX-A8BK-01 9 77436669 77436669 T A TRPM6 Missense_Mutation p.D309V 0.11 deleterious(0.01) benign(0.197) TCGA-DX-A8BL-01 10 124089035 124089035 C T BTBD16 Missense_Mutation p.R318W 0.11 deleterious(0) benign(0.013) TCGA-DX-A8BL-01 10 124923477 124923477 A G BUB3 3'UTR 0.13 TCGA-DX-A8BL-01 10 135013927 135013927 C A KNDC1 Silent p.R984R 0.17 TCGA-DX-A8BL-01 10 91492692 91492692 C G KIF20B Missense_Mutation p.N768K 0.17 tolerated(0.58) benign(0.029) TCGA-DX-A8BL-01 10 96484253 96484253 C A CYP2C18 Missense_Mutation p.T371N 0.15 deleterious(0.05) benign(0.169) TCGA-DX-A8BL-01 11 45203362 45203362 C T PRDM11 Silent p.A15A 0.40 TCGA-DX-A8BL-01 11 45671752 45671752 G T CHST1 Missense_Mutation p.A241D 0.18 deleterious(0) probably_damaging(0.942) TCGA-DX-A8BL-01 11 59857896 59857896 A C MS4A2 Missense_Mutation p.I92L 0.19 tolerated(0.27) benign(0.016) TCGA-DX-A8BL-01 11 61277446 61277446 A T LRRC10B 3'UTR 0.25 TCGA-DX-A8BL-01 11 62996923 62996923 T A SLC22A25 Missense_Mutation p.S68C 0.24 deleterious(0) possibly_damaging(0.88) TCGA-DX-A8BL-01 11 71715046 71715046 T G NUMA1 Missense_Mutation p.K2075Q 0.23 probably_damaging(0.999) TCGA-DX-A8BL-01 12 1009691 1009691 C T WNK1 Silent p.T2166T 0.45 TCGA-DX-A8BL-01 12 15654724 15654724 A T PTPRO Missense_Mutation p.N278Y 0.26 tolerated_low_confidence(0.18) benign(0.043) TCGA-DX-A8BL-01 12 55759380 55759380 G T OR6C75 Silent p.L162L 0.24 TCGA-DX-A8BL-01 12 56732989 56732989 T A IL23A Missense_Mutation p.M54K 0.17 deleterious(0.02) benign(0.135) TCGA-DX-A8BL-01 12 5744346 5744346 G A ANO2 Silent p.G596G 0.39 TCGA-DX-A8BL-01 12 58152549 58152549 C T MARCH9 Missense_Mutation p.R304C 0.33 deleterious(0.05) benign(0.006) TCGA-DX-A8BL-01 12 6909243 6909243 G A CD4 5'UTR 0.33 TCGA-DX-A8BL-01 12 92818639 92818639 C A CLLU1 Missense_Mutation p.S61R 0.12 possibly_damaging(0.514) TCGA-DX-A8BL-01 13 100518604 100518604 C T CLYBL Nonsense_Mutation p.R249* 0.61 TCGA-DX-A8BL-01 13 84451724 84451724 G C SLITRK1 3'UTR 0.64 TCGA-DX-A8BL-01 14 100795157 100795157 C T SLC25A47 Missense_Mutation p.P141L 0.48 tolerated(0.1) benign(0.015) TCGA-DX-A8BL-01 14 21894403 21894403 T G CHD8 Splice_Site p.X534_splice 0.16 TCGA-DX-A8BL-01 14 60468763 60468763 C T LRRC9 Missense_Mutation p.T870M 0.15 deleterious(0.03) probably_damaging(0.959) TCGA-DX-A8BL-01 15 22473211 22473211 C T IGHV4OR15-8 Silent p.Q20Q 0.10 TCGA-DX-A8BL-01 15 34659307 34659307 G T LPCAT4 5'UTR 0.20 TCGA-DX-A8BL-01 15 39885262 39885262 T G THBS1 Missense_Mutation p.D943E 0.13 tolerated(0.27) benign(0.013) TCGA-DX-A8BL-01 15 45556855 45556855 G T SLC28A2 Silent p.V197V 0.19 TCGA-DX-A8BL-01 15 55497751 55497751 G A RAB27A Missense_Mutation p.T207M 0.23 tolerated(0.11) benign(0.097) TCGA-DX-A8BL-01 16 2908114 2908114 G C PRSS22 5'UTR 0.10 TCGA-DX-A8BL-01 16 30536059 30536059 G A ZNF768 Missense_Mutation p.R468C 0.27 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-DX-A8BL-01 17 17699410 17699410 G A RAI1 Missense_Mutation p.E1050K 0.10 deleterious(0.01) benign(0.008) TCGA-DX-A8BL-01 17 55189859 55189859 A G AKAP1 Silent p.Q661Q 0.19 TCGA-DX-A8BL-01 17 8296735 8296735 G T RNF222 Silent p.P15P 0.21 TCGA-DX-A8BL-01 17 8380278 8380278 C T MYH10 Missense_Mutation p.R1932H 0.20 possibly_damaging(0.9) TCGA-DX-A8BL-01 18 10533535 10533535 T C NAPG Missense_Mutation p.L71P 0.09 tolerated(0.06) benign(0.032) TCGA-DX-A8BL-01 18 28993106 28993106 C T DSG4 Nonsense_Mutation p.Q910* 0.18 TCGA-DX-A8BL-01 18 52890812 52890812 C A TCF4 3'Flank 0.07 TCGA-DX-A8BL-01 18 61260203 61260203 A T SERPINB13 Missense_Mutation p.N157I 0.12 deleterious(0) possibly_damaging(0.691) TCGA-DX-A8BL-01 19 1438503 1438503 G T RPS15 Intron 0.17 TCGA-DX-A8BL-01 19 15224613 15224618 AGCGAG - SYDE1 In_Frame_Del p.S683_E684del 0.16 TCGA-DX-A8BL-01 19 32873817 32873817 C G ZNF507 Missense_Mutation p.S897C 0.11 tolerated(0.29) probably_damaging(0.971) TCGA-DX-A8BL-01 19 36259390 36259390 G A C19orf55 3'UTR 0.13 TCGA-DX-A8BL-01 19 41447252 41447252 C A AC092071.1 5'Flank 0.06 TCGA-DX-A8BL-01 19 44636550 44636550 C G ZNF225 Missense_Mutation p.P595A 0.09 deleterious(0) possibly_damaging(0.554) TCGA-DX-A8BL-01 19 45029236 45029236 G A CEACAM20 RNA 0.42 TCGA-DX-A8BL-01 19 45853898 45853898 G C KLC3 Splice_Site p.X425_splice 0.07 TCGA-DX-A8BL-01 19 57335828 57335828 T C PEG3 Missense_Mutation p.K66E 0.16 deleterious(0.01) benign(0.138) TCGA-DX-A8BL-01 19 6213052 6213052 G T MLLT1 3'UTR 0.38 TCGA-DX-A8BL-01 19 6890543 6890543 C A EMR1 Missense_Mutation p.P28Q 0.27 tolerated(0.3) benign(0.002) TCGA-DX-A8BL-01 19 7761923 7761923 C G FCER2 Missense_Mutation p.D119H 0.09 deleterious(0.02) possibly_damaging(0.643) TCGA-DX-A8BL-01 1 110170851 110170851 G T AMPD2 Missense_Mutation p.M463I 0.14 tolerated(0.23) benign(0.289) TCGA-DX-A8BL-01 1 113160768 113160768 T G ST7L Intron 0.33 TCGA-DX-A8BL-01 1 153303198 153303198 C A PGLYRP4 3'UTR 0.17 TCGA-DX-A8BL-01 1 155158531 155158531 T C MUC1 3'UTR 0.10 TCGA-DX-A8BL-01 1 157062565 157062565 T A ETV3L Missense_Mutation p.K321M 0.22 deleterious(0) benign(0.204) TCGA-DX-A8BL-01 1 173490495 173490495 C G SLC9C2 Missense_Mutation p.C895S 0.03 deleterious(0.01) probably_damaging(1) TCGA-DX-A8BL-01 1 17395742 17395742 C T PADI2 Missense_Mutation p.G599S 0.14 deleterious(0) probably_damaging(1) TCGA-DX-A8BL-01 1 178491373 178491373 A G TEX35 Intron 0.32 TCGA-DX-A8BL-01 1 179380379 179380379 C G AXDND1 Missense_Mutation p.A403G 0.17 deleterious(0) possibly_damaging(0.739) TCGA-DX-A8BL-01 1 186086748 186086748 G C HMCN1 Silent p.L3947L 0.39 TCGA-DX-A8BL-01 1 207304944 207304944 A T C4BPA Missense_Mutation p.R315W 0.34 tolerated(0.2) benign(0.029) TCGA-DX-A8BL-01 1 214170638 214170638 C T PROX1 Nonsense_Mutation p.Q254* 0.12 TCGA-DX-A8BL-01 1 215848049 215848049 G T USH2A Missense_Mutation p.Q4402K 0.30 benign(0.004) TCGA-DX-A8BL-01 1 218509806 218509806 A G RRP15 3'UTR 0.15 TCGA-DX-A8BL-01 1 220804450 220804450 C T MARK1 Missense_Mutation p.P328L 0.24 tolerated(0.59) benign(0.003) TCGA-DX-A8BL-01 1 22915658 22915658 C A EPHA8 Missense_Mutation p.P425H 0.16 deleterious(0.03) benign(0.006) TCGA-DX-A8BL-01 1 240656641 240656641 C A GREM2 Missense_Mutation p.W45C 0.36 tolerated(0.19) benign(0.001) TCGA-DX-A8BL-01 1 240656642 240656642 C A GREM2 Missense_Mutation p.W45L 0.36 tolerated(0.71) benign(0.003) TCGA-DX-A8BL-01 1 248458375 248458375 G A OR2T12 Missense_Mutation p.A169V 0.14 deleterious(0.02) benign(0.117) TCGA-DX-A8BL-01 1 32145050 32145050 C T COL16A1 Intron 0.17 TCGA-DX-A8BL-01 1 46493510 46493510 A G MAST2 Missense_Mutation p.D676G 0.44 deleterious_low_confidence(0) benign(0.349) TCGA-DX-A8BL-01 1 55078384 55078384 C A FAM151A Splice_Site p.X192_splice 0.13 TCGA-DX-A8BL-01 20 20610034 20610034 G C RALGAPA2 Silent p.V402V 0.19 TCGA-DX-A8BL-01 20 35769628 35769628 G A MROH8 Silent p.I502I 0.12 TCGA-DX-A8BL-01 21 38997772 38997772 C A KCNJ6 Missense_Mutation p.A321S 0.35 deleterious(0.01) probably_damaging(0.989) TCGA-DX-A8BL-01 21 46935896 46935896 C A SLC19A1 Silent p.L484L 0.12 TCGA-DX-A8BL-01 22 38084916 38084916 C T NOL12 Missense_Mutation p.H100Y 0.30 deleterious(0.01) probably_damaging(1) TCGA-DX-A8BL-01 2 120317315 120317315 G A PCDP1 Silent p.P97P 0.18 TCGA-DX-A8BL-01 2 201688031 201688031 C T BZW1 3'Flank 0.43 TCGA-DX-A8BL-01 2 33809027 33809027 T - FAM98A 3'UTR 0.26 TCGA-DX-A8BL-01 2 37126759 37126759 G A STRN Silent p.F234F 0.14 TCGA-DX-A8BL-01 2 95494939 95494939 A T ANKRD20A8P RNA 0.16 TCGA-DX-A8BL-01 3 107096946 107096946 A G CCDC54 Missense_Mutation p.Y171C 0.47 deleterious(0) possibly_damaging(0.719) TCGA-DX-A8BL-01 3 113325907 113325907 A G SIDT1 Missense_Mutation p.N475S 0.17 deleterious(0) possibly_damaging(0.845) TCGA-DX-A8BL-01 3 151083705 151083705 C T MED12L Silent p.L1050L 0.23 TCGA-DX-A8BL-01 3 153909093 153909093 C A ARHGEF26 Silent p.S552S 0.19 TCGA-DX-A8BL-01 3 175521112 175521112 T A NAALADL2 3'UTR 0.42 TCGA-DX-A8BL-01 3 190967857 190967857 G T OSTN Missense_Mutation p.G117C 0.47 deleterious(0) probably_damaging(0.947) TCGA-DX-A8BL-01 3 26752032 26752032 C T LRRC3B 3'UTR 0.17 TCGA-DX-A8BL-01 4 103853419 103853419 G C SLC9B1 Missense_Mutation p.P231A 0.09 deleterious(0) probably_damaging(0.997) TCGA-DX-A8BL-01 4 123128768 123128768 C T KIAA1109 Missense_Mutation p.T576I 0.33 benign(0.011) TCGA-DX-A8BL-01 4 151141922 151141922 G A DCLK2 Missense_Mutation p.S392N 0.16 tolerated(0.09) possibly_damaging(0.69) TCGA-DX-A8BL-01 4 38016303 38016303 C T TBC1D1 Silent p.I197I 0.19 TCGA-DX-A8BL-01 4 5664843 5664843 G A EVC2 Missense_Mutation p.A379V 0.61 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BL-01 5 126993659 126993659 A T CTXN3 3'UTR 0.27 TCGA-DX-A8BL-01 5 140208144 140208144 C T PCDHA6 Silent p.G156G 0.19 TCGA-DX-A8BL-01 5 140221827 140221827 T C PCDHA8 Silent p.N307N 0.12 TCGA-DX-A8BL-01 5 140625464 140625464 C T PCDHB15 Silent p.F106F 0.17 TCGA-DX-A8BL-01 6 109775015 109775015 G A MICAL1 Missense_Mutation p.R98W 0.11 deleterious(0) probably_damaging(1) TCGA-DX-A8BL-01 6 138610965 138610965 A T KIAA1244 Missense_Mutation p.K969N 0.41 deleterious(0.05) benign(0.142) TCGA-DX-A8BL-01 6 160461743 160461743 G T IGF2R Silent p.L489L 0.14 TCGA-DX-A8BL-01 6 16305359 16305359 C G ATXN1 3'UTR 0.53 TCGA-DX-A8BL-01 6 50812182 50812183 - T TFAP2B 3'UTR 0.23 TCGA-DX-A8BL-01 6 65707520 65707520 G A EYS Silent p.I738I 0.18 TCGA-DX-A8BL-01 6 70917044 70917044 C G COL19A1 3'UTR 0.30 TCGA-DX-A8BL-01 6 84290167 84290167 A T SNAP91 Splice_Site p.X767_splice 0.33 TCGA-DX-A8BL-01 7 102988198 102988198 G T PSMC2 Nonsense_Mutation p.E14* 0.14 TCGA-DX-A8BL-01 7 106508826 106508826 G A PIK3CG Missense_Mutation p.V274I 0.17 deleterious(0.03) possibly_damaging(0.573) TCGA-DX-A8BL-01 7 130002370 130002370 C T CPA5 Missense_Mutation p.T209I 0.56 tolerated(0.38) benign(0.033) TCGA-DX-A8BL-01 7 2742161 2742161 T C AMZ1 Intron 0.20 TCGA-DX-A8BL-01 7 57187411 57187411 C A ZNF479 3'UTR 0.44 TCGA-DX-A8BL-01 7 57530062 57530062 G T ZNF716 3'UTR 0.30 TCGA-DX-A8BL-01 7 6629958 6629958 G A C7orf26 Missense_Mutation p.S15N 0.42 deleterious(0.03) possibly_damaging(0.682) TCGA-DX-A8BL-01 7 93055578 93055578 T C CALCR 3'UTR 0.25 TCGA-DX-A8BL-01 7 93072957 93072957 G T CALCR Missense_Mutation p.T288N 0.46 tolerated(0.08) benign(0.015) TCGA-DX-A8BL-01 8 110527530 110527530 C T PKHD1L1 Silent p.Y3895Y 0.14 TCGA-DX-A8BL-01 8 125061960 125061960 C G FER1L6 Missense_Mutation p.S946C 0.15 tolerated(0.07) benign(0.049) TCGA-DX-A8BL-01 8 145059028 145059028 G T PARP10 Missense_Mutation p.P381H 0.29 deleterious(0.01) benign(0.407) TCGA-DX-A8BL-01 8 24256526 24256526 A G ADAMDEC1 Missense_Mutation p.K301R 0.08 tolerated(0.09) benign(0.094) TCGA-DX-A8BL-01 8 37701453 37701453 G A BRF2 3'UTR 0.14 TCGA-DX-A8BL-01 8 39363347 39363347 T A ADAM3A RNA 0.39 TCGA-DX-A8BL-01 8 8234306 8234306 T C SGK223 Missense_Mutation p.E538G 0.35 benign(0) TCGA-DX-A8BL-01 8 88885254 88885254 C T DCAF4L2 Missense_Mutation p.A316T 0.11 tolerated(0.1) probably_damaging(0.986) TCGA-DX-A8BL-01 9 118997486 118997486 C T PAPPA Missense_Mutation p.P768S 0.24 tolerated(0.76) possibly_damaging(0.641) TCGA-DX-A8BL-01 9 123205989 123205989 G T CDK5RAP2 Missense_Mutation p.D1019E 0.26 tolerated(0.37) benign(0.035) TCGA-DX-A8BL-01 9 132651524 132651524 C A FNBP1 3'UTR 0.28 TCGA-DX-A8BL-01 9 33351632 33351632 G C NFX1 Silent p.G833G 0.21 TCGA-DX-A8BL-01 9 35607979 35607979 G A TESK1 Missense_Mutation p.A256T 0.09 deleterious(0) probably_damaging(1) TCGA-DX-A8BL-01 9 77377199 77377199 G A TRPM6 Missense_Mutation p.T1463I 0.27 deleterious_low_confidence(0.05) benign(0.288) TCGA-DX-A8BL-01 9 77377477 77377477 T C TRPM6 Silent p.P1370P 0.12 TCGA-DX-A8BL-01 9 92001316 92001316 T C SEMA4D Missense_Mutation p.E471G 0.12 deleterious(0.02) benign(0.072) TCGA-DX-A8BL-01 X 27997691 27997691 G A DCAF8L1 Silent p.S587S 0.32 TCGA-DX-A8BL-01 X 47775958 47775958 A G ZNF81 Missense_Mutation p.Y638C 0.16 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BL-01 X 73040985 73040985 C T XIST RNA 0.72 TCGA-DX-A8BL-01 X 77528983 77528983 G T CYSLTR1 Silent p.G87G 0.25 TCGA-DX-A8BM-01 10 45939709 45939709 C T ALOX5 Missense_Mutation p.A607V 0.78 tolerated(0.89) possibly_damaging(0.782) TCGA-DX-A8BM-01 10 6150704 6150704 G A RBM17 Silent p.E187E 0.72 TCGA-DX-A8BM-01 10 62648024 62648024 G A RHOBTB1 Missense_Mutation p.H468Y 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-DX-A8BM-01 10 82126778 82126778 C T DYDC2 3'UTR 0.42 TCGA-DX-A8BM-01 10 85974228 85974228 G A CDHR1 Missense_Mutation p.V811M 0.30 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-DX-A8BM-01 11 107535878 107535878 G A ELMOD1 Silent p.A320A 0.44 TCGA-DX-A8BM-01 11 1280228 1280228 G T MUC5B Silent p.G5550G 0.29 TCGA-DX-A8BM-01 11 16339933 16339933 T A SOX6 Intron 0.07 TCGA-DX-A8BM-01 11 64786200 64786200 G T ARL2 Nonsense_Mutation p.E112* 0.22 TCGA-DX-A8BM-01 11 7488652 7488652 C T SYT9 3'UTR 0.22 TCGA-DX-A8BM-01 12 123485013 123485013 T A PITPNM2 Intron 0.19 TCGA-DX-A8BM-01 12 18891469 18891469 A T CAPZA3 Missense_Mutation p.K89N 0.73 deleterious(0.03) possibly_damaging(0.461) TCGA-DX-A8BM-01 12 32977078 32977078 G A PKP2 Silent p.G569G 0.24 TCGA-DX-A8BM-01 12 57593005 57593005 G A LRP1 Silent p.Q3229Q 0.20 TCGA-DX-A8BM-01 12 57594262 57594262 G A LRP1 Nonsense_Mutation p.W3351* 0.13 TCGA-DX-A8BM-01 12 57595284 57595284 G A LRP1 Silent p.E3450E 0.33 TCGA-DX-A8BM-01 13 108884437 108884437 G A ABHD13 3'UTR 0.48 TCGA-DX-A8BM-01 13 48947546 48947546 T - RB1 Frame_Shift_Del p.M379* 0.35 TCGA-DX-A8BM-01 13 52536007 52536007 C A ATP7B Missense_Mutation p.A638S 0.23 tolerated(0.12) benign(0.333) TCGA-DX-A8BM-01 14 65220346 65220346 C T SPTB Missense_Mutation p.A2171T 0.37 tolerated(0.15) benign(0.002) TCGA-DX-A8BM-01 14 95554377 95554377 T C DICER1 3'UTR 0.62 TCGA-DX-A8BM-01 14 96852887 96852887 G C GSKIP 3'UTR 0.34 TCGA-DX-A8BM-01 15 29996484 29996484 C T TJP1 Silent p.V1698V 0.17 TCGA-DX-A8BM-01 16 3349014 3349014 T C TIGD7 Missense_Mutation p.N534S 0.45 tolerated_low_confidence(0.9) benign(0.004) TCGA-DX-A8BM-01 16 3646204 3646204 G A SLX4 Missense_Mutation p.A625V 0.41 tolerated(0.12) benign(0.086) TCGA-DX-A8BM-01 16 74339214 74339214 T A PSMD7 Silent p.T186T 0.48 TCGA-DX-A8BM-01 16 84801916 84801916 G C USP10 Missense_Mutation p.L650F 0.19 deleterious(0.02) probably_damaging(0.994) TCGA-DX-A8BM-01 17 17682105 17682106 TG - RAI1 Intron 0.32 TCGA-DX-A8BM-01 17 3119374 3119374 G A OR1A1 Missense_Mutation p.A154T 0.44 tolerated(0.09) benign(0.053) TCGA-DX-A8BM-01 17 47115649 47115649 G A IGF2BP1 Missense_Mutation p.R174Q 0.37 deleterious(0.05) probably_damaging(0.942) TCGA-DX-A8BM-01 17 58529372 58529372 A T APPBP2 Missense_Mutation p.I458N 0.15 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BM-01 17 61996171 61996171 G T GH1 5'UTR 0.34 TCGA-DX-A8BM-01 17 6330048 6330048 T A AIPL1 Missense_Mutation p.K224M 0.38 deleterious(0.01) possibly_damaging(0.88) TCGA-DX-A8BM-01 17 72340475 72340475 C G KIF19 Missense_Mutation p.I190M 0.44 tolerated(0.09) possibly_damaging(0.537) TCGA-DX-A8BM-01 17 72366770 72366770 G A GPR142 Missense_Mutation p.V157I 0.54 tolerated(0.39) benign(0.001) TCGA-DX-A8BM-01 18 9550066 9550066 A T PPP4R1 Missense_Mutation p.F844Y 0.07 tolerated(0.1) benign(0.141) TCGA-DX-A8BM-01 19 15547866 15547866 C T WIZ Missense_Mutation p.G94S 0.58 deleterious(0) probably_damaging(1) TCGA-DX-A8BM-01 19 18179264 18179264 G A IL12RB1 Missense_Mutation p.S421F 0.32 deleterious(0) probably_damaging(0.936) TCGA-DX-A8BM-01 19 38976304 38976304 G A RYR1 Missense_Mutation p.R1670H 0.33 possibly_damaging(0.54) TCGA-DX-A8BM-01 19 39229227 39229227 G A CAPN12 Missense_Mutation p.T264M 0.20 deleterious(0) probably_damaging(1) TCGA-DX-A8BM-01 19 51537872 51537872 C T KLK12 Silent p.G2G 0.25 TCGA-DX-A8BM-01 1 13036643 13036643 C G PRAMEF22 Missense_Mutation p.L239V 0.29 deleterious(0) possibly_damaging(0.73) TCGA-DX-A8BM-01 1 155154488 155154488 C T TRIM46 Silent p.G583G 0.28 TCGA-DX-A8BM-01 1 161512900 161512900 T C FCGR3A Missense_Mutation p.T259A 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-DX-A8BM-01 1 169572298 169572298 C T SELP Silent p.S557S 0.28 TCGA-DX-A8BM-01 1 205028265 205028265 G A CNTN2 Missense_Mutation p.G181R 0.33 tolerated(0.34) possibly_damaging(0.711) TCGA-DX-A8BM-01 1 216256823 216256823 T A USH2A Missense_Mutation p.N1758I 0.37 possibly_damaging(0.908) TCGA-DX-A8BM-01 1 246954051 246954051 C A RP11-439E19.3 RNA 0.26 TCGA-DX-A8BM-01 1 53724068 53724068 G T LRP8 Missense_Mutation p.S711Y 0.20 deleterious(0) possibly_damaging(0.853) TCGA-DX-A8BM-01 1 93677634 93677659 TTCCCTTCTTTTCTTTTGTGCCAGAA - CCDC18 Splice_Site p.X499_splice 0.20 TCGA-DX-A8BM-01 20 30784433 30784433 A T PLAGL2 Missense_Mutation p.V438D 0.17 tolerated(0.16) probably_damaging(0.954) TCGA-DX-A8BM-01 20 33300900 33300901 - C TP53INP2 3'UTR 0.30 TCGA-DX-A8BM-01 20 35748906 35748933 CCTCCACAAAAAAGCCTGCAGATGTGAG A MROH8 Splice_Site p.X761_splice 0.12 TCGA-DX-A8BM-01 20 5904558 5904558 G A CHGB Missense_Mutation p.A590T 0.53 deleterious(0.04) benign(0.14) TCGA-DX-A8BM-01 21 17183456 17183456 G T USP25 Silent p.T286T 0.20 TCGA-DX-A8BM-01 22 22869380 22869380 G T ZNF280A Missense_Mutation p.S192Y 0.17 deleterious(0.05) possibly_damaging(0.464) TCGA-DX-A8BM-01 22 26688873 26688873 C A SEZ6L Missense_Mutation p.P199H 0.33 deleterious(0.03) probably_damaging(0.968) TCGA-DX-A8BM-01 2 145156960 145156960 C T ZEB2 Silent p.Q598Q 0.10 TCGA-DX-A8BM-01 2 179470001 179470001 C T TTN Missense_Mutation p.R17968H 0.42 TCGA-DX-A8BM-01 2 1947065 1947065 T A MYT1L Missense_Mutation p.D65V 0.64 deleterious(0.02) unknown(0) TCGA-DX-A8BM-01 2 46809713 46809713 C A RHOQ 3'UTR 0.15 TCGA-DX-A8BM-01 2 70043324 70043324 A T ANXA4 Missense_Mutation p.H209L 0.28 tolerated(0.27) benign(0.056) TCGA-DX-A8BM-01 2 80085281 80085281 G A CTNNA2 Missense_Mutation p.M147I 0.31 tolerated(0.31) benign(0.059) TCGA-DX-A8BM-01 3 10302199 10302199 C T TATDN2 Missense_Mutation p.P265S 0.15 tolerated(0.73) benign(0.018) TCGA-DX-A8BM-01 3 43390407 43390407 G T SNRK 3'UTR 0.17 TCGA-DX-A8BM-01 4 122853861 122853861 G T TRPC3 Missense_Mutation p.S184R 0.20 tolerated(0.38) possibly_damaging(0.773) TCGA-DX-A8BM-01 4 156137784 156137784 C G NPY2R 3'UTR 0.24 TCGA-DX-A8BM-01 4 15826501 15826501 T C CD38 Intron 0.49 TCGA-DX-A8BM-01 4 265951 265951 A C ZNF732 Missense_Mutation p.F232C 0.47 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BM-01 4 36283463 36283463 C A DTHD1 5'Flank 0.30 TCGA-DX-A8BM-01 4 37592165 37592165 C T C4orf19 Missense_Mutation p.S163F 0.17 tolerated(0.07) probably_damaging(0.964) TCGA-DX-A8BM-01 5 10973629 10973629 C T CTNND2 Missense_Mutation p.R1205H 0.21 deleterious(0) probably_damaging(0.985) TCGA-DX-A8BM-01 5 121726792 121726792 A G SNCAIP 5'UTR 0.51 TCGA-DX-A8BM-01 5 122950190 122950190 C T CSNK1G3 3'UTR 0.22 TCGA-DX-A8BM-01 5 161309663 161309663 T C GABRA1 Missense_Mutation p.L220P 0.13 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BM-01 5 176002819 176002819 G C CDHR2 Missense_Mutation p.E313D 0.14 tolerated(0.06) benign(0.383) TCGA-DX-A8BM-01 5 79351744 79351744 C G THBS4 Silent p.L143L 0.45 TCGA-DX-A8BM-01 6 108192692 108192692 C A SEC63 3'UTR 0.09 TCGA-DX-A8BM-01 6 28297405 28297405 G A ZSCAN31 Missense_Mutation p.P19L 0.37 tolerated(0.67) benign(0.01) TCGA-DX-A8BM-01 6 38705605 38705605 G A DNAH8 Missense_Mutation p.G108R 0.19 benign(0.146) TCGA-DX-A8BM-01 6 90450009 90450009 T C MDN1 Missense_Mutation p.K1513E 0.45 benign(0.028) TCGA-DX-A8BM-01 7 100218565 100218565 C T TFR2 Missense_Mutation p.R774H 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-DX-A8BM-01 7 100281475 100281475 G A GIGYF1 Silent p.L645L 0.14 TCGA-DX-A8BM-01 7 138429926 138429926 A G ATP6V0A4 Silent p.L474L 0.45 TCGA-DX-A8BM-01 7 20454724 20454724 C T ITGB8 3'UTR 0.45 TCGA-DX-A8BM-01 7 26686211 26686211 A G C7orf71 3'UTR 0.27 TCGA-DX-A8BM-01 7 73814723 73814723 T A CLIP2 Missense_Mutation p.D968E 0.23 tolerated(0.64) benign(0.007) TCGA-DX-A8BM-01 7 73814724 73814724 C T CLIP2 Nonsense_Mutation p.Q969* 0.22 TCGA-DX-A8BM-01 8 24254877 24254877 G A ADAMDEC1 Missense_Mutation p.E179K 0.16 tolerated(0.08) benign(0.421) TCGA-DX-A8BM-01 8 30601706 30601706 C T UBXN8 RNA 0.36 TCGA-DX-A8BM-01 8 35651267 35651267 T C UNC5D 3'Flank 0.27 TCGA-DX-A8BM-01 8 442474 442474 G A TDRP Silent p.R161R 0.55 TCGA-DX-A8BM-01 8 52287285 52287285 G A PXDNL Silent p.Y1188Y 0.68 TCGA-DX-A8BM-01 9 131493430 131493430 A T ZER1 3'UTR 0.25 TCGA-DX-A8BM-01 9 140395146 140395146 T C PNPLA7 Missense_Mutation p.Y585C 0.24 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BM-01 9 79897094 79897094 A C VPS13A Missense_Mutation p.N1008H 0.24 deleterious(0) possibly_damaging(0.841) TCGA-DX-A8BM-01 X 50114724 50114724 T C DGKK Intron 0.23 TCGA-DX-A8BM-01 X 53631666 53631666 A G HUWE1 Missense_Mutation p.C876R 0.46 benign(0.316) TCGA-DX-A8BM-01 X 76938366 76938367 - T ATRX Frame_Shift_Ins p.K796Qfs*4 0.46 TCGA-DX-A8BN-01 10 121590370 121590370 A T MCMBP 3'UTR 0.42 TCGA-DX-A8BN-01 11 1651597 1651597 C T KRTAP5-5 Missense_Mutation p.S176F 0.19 deleterious_low_confidence(0) unknown(0) TCGA-DX-A8BN-01 11 62415487 62415487 G A INTS5 Silent p.L689L 0.22 TCGA-DX-A8BN-01 11 64518806 64518806 C T PYGM Missense_Mutation p.A654T 0.43 deleterious(0) probably_damaging(1) TCGA-DX-A8BN-01 11 70332776 70332776 G A SHANK2 Missense_Mutation p.R1209W 0.20 deleterious(0) benign(0.256) TCGA-DX-A8BN-01 11 85669994 85669994 G A PICALM 3'UTR 0.57 TCGA-DX-A8BN-01 12 133197922 133197922 G A P2RX2 Silent p.V329V 0.18 TCGA-DX-A8BN-01 12 50036848 50036848 G A FMNL3 3'UTR 0.27 TCGA-DX-A8BN-01 14 24708095 24708095 G T GMPR2 3'UTR 0.20 TCGA-DX-A8BN-01 14 81422114 81422114 G T TSHR Missense_Mutation p.E30D 0.14 tolerated(0.3) benign(0.001) TCGA-DX-A8BN-01 15 59470648 59470648 C A MYO1E Missense_Mutation p.D665Y 0.30 deleterious(0) probably_damaging(0.983) TCGA-DX-A8BN-01 15 65628224 65628224 G A IGDCC3 Silent p.C160C 0.39 TCGA-DX-A8BN-01 16 30785531 30785531 C T RNF40 3'UTR 0.29 TCGA-DX-A8BN-01 16 31143813 31143813 C T PRSS8 Silent p.P214P 0.06 TCGA-DX-A8BN-01 16 4431143 4431143 G A VASN Missense_Mutation p.A89T 0.05 tolerated(1) benign(0.004) TCGA-DX-A8BN-01 16 86575760 86575760 T A MTHFSD Missense_Mutation p.M168L 0.50 tolerated(0.08) benign(0.029) TCGA-DX-A8BN-01 17 1634083 1634083 C T WDR81 Silent p.G1270G 0.66 TCGA-DX-A8BN-01 17 1657814 1657814 G A SERPINF2 Missense_Mutation p.G488S 0.83 tolerated_low_confidence(1) benign(0) TCGA-DX-A8BN-01 17 7496167 7496167 G A FXR2 Missense_Mutation p.S525F 0.74 deleterious(0) possibly_damaging(0.722) TCGA-DX-A8BN-01 19 21216935 21216935 G C ZNF430 Missense_Mutation p.E89D 0.44 deleterious(0.01) possibly_damaging(0.766) TCGA-DX-A8BN-01 19 2226474 2226474 C T DOT1L Silent p.F1318F 0.08 TCGA-DX-A8BN-01 19 39971423 39971423 T A TIMM50 Missense_Mutation p.I80N 0.12 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-DX-A8BN-01 19 40199930 40199930 A G LGALS14 Missense_Mutation p.T162A 0.10 deleterious(0.03) possibly_damaging(0.803) TCGA-DX-A8BN-01 19 54481448 54481448 C T CACNG8 Missense_Mutation p.T111M 0.10 tolerated(0.09) benign(0.269) TCGA-DX-A8BN-01 19 8807881 8807881 G A ACTL9 Missense_Mutation p.R391C 0.35 tolerated(0.17) possibly_damaging(0.745) TCGA-DX-A8BN-01 1 120337127 120337127 T C REG4 3'UTR 0.20 TCGA-DX-A8BN-01 1 213168525 213168525 A G ANGEL2 Missense_Mutation p.V498A 0.28 tolerated(0.53) benign(0.002) TCGA-DX-A8BN-01 1 220792077 220792077 A T MARK1 Missense_Mutation p.I297L 0.18 tolerated(0.13) benign(0.002) TCGA-DX-A8BN-01 1 22149775 22149775 G A LDLRAD2 3'UTR 0.10 TCGA-DX-A8BN-01 1 229667402 229667402 C T ABCB10 Silent p.E472E 0.41 TCGA-DX-A8BN-01 1 31744332 31744332 G T SNRNP40 Silent p.R223R 0.16 TCGA-DX-A8BN-01 22 22311776 22311776 A G TOP3B Missense_Mutation p.S767P 0.12 tolerated(0.14) benign(0.009) TCGA-DX-A8BN-01 2 206588537 206588537 G T NRP2 Silent p.G231G 0.29 TCGA-DX-A8BN-01 2 61391639 61391639 C T C2orf74 Nonsense_Mutation p.R188* 0.23 TCGA-DX-A8BN-01 3 135806749 135806749 G T PPP2R3A Missense_Mutation p.R938M 0.46 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BN-01 3 179525571 179525571 G A PEX5L Missense_Mutation p.R523C 0.17 deleterious(0) probably_damaging(1) TCGA-DX-A8BN-01 3 183551567 183551567 G A PARL Missense_Mutation p.P292L 0.29 deleterious(0) probably_damaging(0.996) TCGA-DX-A8BN-01 3 33538980 33538980 T G CLASP2 3'UTR 0.38 TCGA-DX-A8BN-01 4 81504291 81504291 C T C4orf22 Missense_Mutation p.T96M 0.62 deleterious(0.03) benign(0.01) TCGA-DX-A8BN-01 6 32023775 32023775 C T TNXB Missense_Mutation p.D2774N 0.60 possibly_damaging(0.616) TCGA-DX-A8BN-01 7 102760030 102760030 T C NAPEPLD Missense_Mutation p.E312G 0.12 tolerated(0.24) benign(0.031) TCGA-DX-A8BN-01 7 127721533 127721533 A C SND1 Missense_Mutation p.Y697S 0.38 tolerated(0.12) probably_damaging(0.959) TCGA-DX-A8BN-01 7 142571440 142571440 G T TRPV6 Missense_Mutation p.P517T 0.44 tolerated(0.06) probably_damaging(0.973) TCGA-DX-A8BN-01 7 148114513 148114513 A G CNTNAP2 3'UTR 0.12 TCGA-DX-A8BN-01 7 21941178 21941178 C T DNAH11 3'UTR 0.33 TCGA-DX-A8BN-01 7 4901098 4901098 A G PAPOLB Missense_Mutation p.I114T 0.33 deleterious(0.03) benign(0.248) TCGA-DX-A8BN-01 7 6150997 6150997 A G USP42 Missense_Mutation p.K78R 0.12 tolerated(0.3) probably_damaging(0.998) TCGA-DX-A8BN-01 7 99103656 99103656 C T ZKSCAN5 5'UTR 0.36 TCGA-DX-A8BN-01 8 56436473 56436473 G A XKR4 Missense_Mutation p.R547Q 0.26 tolerated(0.07) probably_damaging(0.978) TCGA-DX-A8BN-01 8 75941636 75941636 C T CRISPLD1 Silent p.C445C 0.09 TCGA-DX-A8BN-01 8 99467834 99467834 G T STK3 3'UTR 0.20 TCGA-DX-A8BN-01 9 139750218 139750218 C T MAMDC4 Silent p.G502G 0.08 TCGA-DX-A8BN-01 X 117883649 117883649 T G IL13RA1 Silent p.L132L 0.14 TCGA-DX-A8BN-01 X 14862776 14862776 T A FANCB Missense_Mutation p.M672L 0.29 tolerated(0.15) benign(0.02) TCGA-DX-A8BN-01 X 49106184 49106184 C A CCDC22 Missense_Mutation p.Q590K 0.38 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BN-01 X 70328508 70328508 G C IL2RG Missense_Mutation p.I265M 0.30 deleterious(0) probably_damaging(0.99) TCGA-DX-A8BN-01 X 76939577 76939577 G A ATRX Nonsense_Mutation p.Q391* 0.42 TCGA-DX-A8BO-01 11 66032513 66032513 G A KLC2 Nonsense_Mutation p.W412* 0.45 TCGA-DX-A8BO-01 12 122492735 122492759 AGTCCTCGATGGAACATTCGATGAA CGT BCL7A Frame_Shift_Del p.Q155Pfs*7 0.25 TCGA-DX-A8BO-01 12 40921122 40921122 A T MUC19 Intron 0.26 TCGA-DX-A8BO-01 13 48939108 48939108 G A RB1 Splice_Site p.X313_splice 0.29 TCGA-DX-A8BO-01 14 106829667 106829667 G A IGHV4-34 Missense_Mutation p.T99M 0.45 deleterious(0.03) benign(0.173) TCGA-DX-A8BO-01 15 35045372 35045372 A G GJD2 Silent p.L91L 0.13 TCGA-DX-A8BO-01 16 315131 315131 G T ITFG3 3'UTR 0.60 TCGA-DX-A8BO-01 16 67432540 67432540 G A ZDHHC1 Silent p.L250L 0.38 TCGA-DX-A8BO-01 16 736871 736871 G A WDR24 Missense_Mutation p.T402M 0.23 tolerated(0.24) benign(0.004) TCGA-DX-A8BO-01 17 26696649 26696649 G T VTN Missense_Mutation p.D136E 0.14 tolerated(1) benign(0.021) TCGA-DX-A8BO-01 17 7534625 7534625 C T SHBG Silent p.I167I 0.61 TCGA-DX-A8BO-01 19 11664271 11664271 G T ELOF1 3'UTR 0.25 TCGA-DX-A8BO-01 1 10318638 10318638 G T KIF1B Missense_Mutation p.V91F 0.21 deleterious(0) probably_damaging(0.972) TCGA-DX-A8BO-01 1 117618139 117618139 G A TTF2 Silent p.G311G 0.07 TCGA-DX-A8BO-01 1 12186052 12186052 G A TNFRSF8 Missense_Mutation p.G400S 0.10 tolerated(0.59) benign(0.233) TCGA-DX-A8BO-01 1 146626830 146626830 C A PRKAB2 3'UTR 0.06 TCGA-DX-A8BO-01 1 156510676 156510676 G A IQGAP3 Missense_Mutation p.R855C 0.28 tolerated(0.08) benign(0.052) TCGA-DX-A8BO-01 1 169391311 169391311 C A CCDC181 Missense_Mutation p.D120Y 0.37 deleterious(0) probably_damaging(0.995) TCGA-DX-A8BO-01 1 201013518 201013518 C A CACNA1S Missense_Mutation p.A1579S 0.19 tolerated(0.15) benign(0.017) TCGA-DX-A8BO-01 1 237780697 237780697 C G RYR2 Missense_Mutation p.R1943G 0.15 probably_damaging(0.999) TCGA-DX-A8BO-01 1 44871090 44871090 C T RNF220 5'UTR 0.10 TCGA-DX-A8BO-01 1 86049163 86049163 G T CYR61 3'UTR 0.35 TCGA-DX-A8BO-01 22 35949561 35949561 A T RASD2 3'UTR 0.29 TCGA-DX-A8BO-01 2 113286485 113286485 G A TTL 3'UTR 0.18 TCGA-DX-A8BO-01 2 228844955 228844955 A G SPHKAP 3'UTR 0.35 TCGA-DX-A8BO-01 2 237034053 237034053 C T AGAP1 3'UTR 0.40 TCGA-DX-A8BO-01 2 242162614 242162614 C T ANO7 Missense_Mutation p.R833W 0.25 deleterious(0) probably_damaging(1) TCGA-DX-A8BO-01 2 62066771 62066771 T C FAM161A Silent p.P456P 0.35 TCGA-DX-A8BO-01 3 195512406 195512406 G T MUC4 Silent p.T2015T 0.18 TCGA-DX-A8BO-01 3 24009400 24009426 ATGGGAGCAGGGGATCTGCTAAACTCT - NR1D2 In_Frame_Del p.G478_M486del 0.18 TCGA-DX-A8BO-01 3 36759571 36759571 G A DCLK3 Silent p.D561D 0.39 TCGA-DX-A8BO-01 4 119738536 119738536 C T SEC24D Missense_Mutation p.A94T 0.09 tolerated(0.16) benign(0.031) TCGA-DX-A8BO-01 4 57907080 57907080 G A IGFBP7 Silent p.P165P 0.36 TCGA-DX-A8BO-01 4 80827654 80827655 GG C ANTXR2 3'UTR 0.25 TCGA-DX-A8BO-01 5 121488121 121488121 G C ZNF474 Missense_Mutation p.G146R 0.21 deleterious(0) possibly_damaging(0.793) TCGA-DX-A8BO-01 5 50130827 50130827 G A PARP8 Missense_Mutation p.V814I 0.31 tolerated(0.16) probably_damaging(0.999) TCGA-DX-A8BO-01 5 76342205 76342205 G T AGGF1 Missense_Mutation p.V302F 0.14 tolerated(0.57) benign(0.003) TCGA-DX-A8BO-01 5 96215320 96215320 G T ERAP2 5'UTR 0.15 TCGA-DX-A8BO-01 6 99894289 99894289 T A USP45 Missense_Mutation p.E453D 0.22 tolerated(0.23) benign(0.038) TCGA-DX-A8BO-01 7 124404110 124404110 G C GPR37 Missense_Mutation p.D307E 0.36 deleterious(0) probably_damaging(0.969) TCGA-DX-A8BO-01 7 149570829 149570829 C T ATP6V0E2 5'UTR 0.14 TCGA-DX-A8BO-01 8 104417074 104417074 C T SLC25A32 Silent p.K107K 0.29 TCGA-DX-A8BO-01 8 139164696 139164696 C T FAM135B Silent p.G674G 0.29 TCGA-DX-A8BO-01 8 144397980 144397980 C G TOP1MT Missense_Mutation p.K490N 0.23 deleterious(0.05) probably_damaging(0.998) TCGA-DX-A8BO-01 8 42874063 42874063 T A HOOK3 3'UTR 0.23 TCGA-DX-A8BO-01 8 52284449 52284449 C T PXDNL Nonsense_Mutation p.W1295* 0.22 TCGA-DX-A8BO-01 9 78710909 78710909 T C PCSK5 Missense_Mutation p.I333T 0.21 deleterious(0) probably_damaging(1) TCGA-DX-A8BO-01 X 105281173 105281173 T C SERPINA7 5'UTR 0.50 TCGA-DX-A8BO-01 X 30326646 30326646 G A NR0B1 Missense_Mutation p.P279S 0.35 deleterious(0.03) probably_damaging(0.94) TCGA-DX-A8BO-01 X 32519917 32519917 C A DMD Missense_Mutation p.D779Y 0.64 probably_damaging(0.986) TCGA-DX-A8BP-01 10 100219009 100219009 C T HPSE2 3'UTR 0.29 TCGA-DX-A8BP-01 10 101473009 101473009 G A COX15 3'Flank 0.19 TCGA-DX-A8BP-01 10 102049786 102049786 G A PKD2L1 Missense_Mutation p.P746S 0.11 tolerated_low_confidence(0.19) benign(0.004) TCGA-DX-A8BP-01 10 102222945 102222945 C T WNT8B Missense_Mutation p.S7F 0.21 tolerated(0.73) benign(0) TCGA-DX-A8BP-01 10 102744251 102744251 G A SEMA4G 3'UTR 0.30 TCGA-DX-A8BP-01 10 103921368 103921368 G A NOLC1 Silent p.Q599Q 0.32 TCGA-DX-A8BP-01 10 104163188 104163188 C T PSD Splice_Site p.X949_splice 0.20 TCGA-DX-A8BP-01 10 104171537 104171537 C T PSD Silent p.Q623Q 0.33 TCGA-DX-A8BP-01 10 105203055 105203055 C T PDCD11 Silent p.L1697L 0.12 TCGA-DX-A8BP-01 10 108448081 108448081 C T SORCS1 Missense_Mutation p.G477R 0.31 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 10 114912183 114912183 C T TCF7L2 Missense_Mutation p.S418F 0.15 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 10 116606433 116606433 C T FAM160B1 Missense_Mutation p.P505L 0.35 tolerated(0.1) benign(0.037) TCGA-DX-A8BP-01 10 118351374 118351374 G A PNLIPRP1 Nonsense_Mutation p.W47* 0.24 TCGA-DX-A8BP-01 10 124672476 124672476 G A FAM24A 3'UTR 0.24 TCGA-DX-A8BP-01 10 131639236 131639236 G A EBF3 Missense_Mutation p.P469L 0.16 deleterious_low_confidence(0) benign(0.178) TCGA-DX-A8BP-01 10 13323065 13323065 C T PHYH Missense_Mutation p.V292M 0.12 deleterious(0) possibly_damaging(0.892) TCGA-DX-A8BP-01 10 135371703 135371703 A T SYCE1 Missense_Mutation p.V96E 0.20 deleterious(0) possibly_damaging(0.888) TCGA-DX-A8BP-01 10 16555430 16555430 A T PTER 3'UTR 0.28 TCGA-DX-A8BP-01 10 17747638 17747638 C T STAM Silent p.S369S 0.45 TCGA-DX-A8BP-01 10 22048458 22048458 G A DNAJC1 Nonsense_Mutation p.Q413* 0.23 TCGA-DX-A8BP-01 10 22680840 22680840 C T SPAG6 Silent p.L396L 0.23 TCGA-DX-A8BP-01 10 22680841 22680841 C T SPAG6 Nonsense_Mutation p.Q397* 0.23 TCGA-DX-A8BP-01 10 26436477 26436477 T C MYO3A Missense_Mutation p.L875P 0.14 deleterious(0) possibly_damaging(0.542) TCGA-DX-A8BP-01 10 26581851 26581851 C T GAD2 Silent p.C505C 0.29 TCGA-DX-A8BP-01 10 26581852 26581852 T C GAD2 Missense_Mutation p.F506L 0.29 deleterious(0.01) probably_damaging(0.988) TCGA-DX-A8BP-01 10 33474611 33474611 C A NRP1 Silent p.G792G 0.23 TCGA-DX-A8BP-01 10 61788574 61788574 G A ANK3 3'UTR 0.19 TCGA-DX-A8BP-01 10 63856550 63856550 A G ARID5B 3'UTR 0.17 TCGA-DX-A8BP-01 10 6470129 6470129 G A PRKCQ 3'UTR 0.21 TCGA-DX-A8BP-01 10 65358927 65358927 C T REEP3 Intron 0.19 TCGA-DX-A8BP-01 10 70863888 70863888 C T SRGN 3'UTR 0.37 TCGA-DX-A8BP-01 10 71718802 71718802 A C COL13A1 3'UTR 0.29 TCGA-DX-A8BP-01 10 72494975 72494975 C T ADAMTS14 Missense_Mutation p.P471L 0.18 tolerated(1) benign(0.02) TCGA-DX-A8BP-01 10 73767800 73767800 G A CHST3 Silent p.E337E 0.25 TCGA-DX-A8BP-01 10 75258372 75258372 G A USP54 3'UTR 0.17 TCGA-DX-A8BP-01 10 7762847 7762847 G A ITIH2 Missense_Mutation p.G220E 0.33 deleterious(0.03) possibly_damaging(0.883) TCGA-DX-A8BP-01 10 81680768 81680768 G A MBL1P RNA 0.21 TCGA-DX-A8BP-01 10 81706257 81706257 C T SFTPD Silent p.R53R 0.29 TCGA-DX-A8BP-01 10 88428271 88428271 C T LDB3 5'UTR 0.19 TCGA-DX-A8BP-01 10 91222341 91222341 G A SLC16A12 5'UTR 0.33 TCGA-DX-A8BP-01 10 96030337 96030337 G A PLCE1 Missense_Mutation p.R1495Q 0.29 tolerated(0.13) probably_damaging(0.999) TCGA-DX-A8BP-01 10 96447886 96447886 C T CYP2C18 Silent p.I112I 0.30 TCGA-DX-A8BP-01 10 97099064 97099064 G A SORBS1 Silent p.L897L 0.32 TCGA-DX-A8BP-01 10 99664461 99664461 G A CRTAC1 Silent p.L321L 0.30 TCGA-DX-A8BP-01 11 105850867 105850867 C T GRIA4 3'UTR 0.26 TCGA-DX-A8BP-01 11 10823750 10823750 C T EIF4G2 Missense_Mutation p.G382E 0.22 tolerated(0.16) benign(0.279) TCGA-DX-A8BP-01 11 1104068 1104068 G A MUC2 Silent p.L2753L 0.13 TCGA-DX-A8BP-01 11 113283521 113283521 G A DRD2 Missense_Mutation p.P299S 0.32 tolerated(0.33) benign(0.004) TCGA-DX-A8BP-01 11 114401507 114401507 C T NXPE1 5'UTR 0.10 TCGA-DX-A8BP-01 11 1155571 1155571 T G MUC5AC Missense_Mutation p.F87V 0.18 deleterious(0) possibly_damaging(0.842) TCGA-DX-A8BP-01 11 117392047 117392047 G A DSCAML1 Silent p.A397A 0.24 TCGA-DX-A8BP-01 11 118520812 118520812 C T PHLDB1 Missense_Mutation p.R1229W 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 11 118622519 118622519 C T DDX6 3'UTR 0.35 TCGA-DX-A8BP-01 11 119002250 119002250 C T HINFP Silent p.S139S 0.30 TCGA-DX-A8BP-01 11 119043612 119043612 C T NLRX1 Missense_Mutation p.A48V 0.32 deleterious_low_confidence(0.01) benign(0.015) TCGA-DX-A8BP-01 11 119043613 119043613 C T NLRX1 Silent p.A48A 0.35 TCGA-DX-A8BP-01 11 120983818 120983818 C T TECTA Missense_Mutation p.S175F 0.16 tolerated(0.17) benign(0.12) TCGA-DX-A8BP-01 11 1262307 1262307 T G MUC5B Missense_Mutation p.C1399W 0.27 unknown(0) TCGA-DX-A8BP-01 11 14793513 14793513 T C PDE3B Missense_Mutation p.W337R 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-DX-A8BP-01 11 18730958 18730958 C T IGSF22 Missense_Mutation p.G992R 0.27 tolerated(0.08) probably_damaging(0.99) TCGA-DX-A8BP-01 11 20072841 20072841 G C NAV2 Silent p.P1504P 0.31 TCGA-DX-A8BP-01 11 22279262 22279262 C T ANO5 Missense_Mutation p.P457S 0.24 tolerated(0.64) benign(0.04) TCGA-DX-A8BP-01 11 26581287 26581287 G A ANO3 Missense_Mutation p.G470R 0.32 tolerated(0.34) probably_damaging(1) TCGA-DX-A8BP-01 11 28311890 28311890 G A METTL15 Missense_Mutation p.R182K 0.13 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 11 4113184 4113184 T G STIM1 3'UTR 0.29 TCGA-DX-A8BP-01 11 46681022 46681022 C T ATG13 Missense_Mutation p.S259F 0.17 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BP-01 11 46750994 46750994 G A F2 Missense_Mutation p.A513T 0.09 tolerated(1) benign(0) TCGA-DX-A8BP-01 11 46905442 46905442 G A LRP4 Silent p.I864I 0.25 TCGA-DX-A8BP-01 11 47490243 47490243 G A CELF1 3'Flank 0.21 TCGA-DX-A8BP-01 11 4790811 4790811 C T OR51F1 Missense_Mutation p.E113K 0.33 deleterious(0) possibly_damaging(0.786) TCGA-DX-A8BP-01 11 48177363 48177363 C T PTPRJ Silent p.S1080S 0.25 TCGA-DX-A8BP-01 11 48511189 48511189 C T OR4A47 Missense_Mutation p.P282L 0.26 deleterious_low_confidence(0.01) benign(0.157) TCGA-DX-A8BP-01 11 51516172 51516172 G A OR4C46 Silent p.R297R 0.35 TCGA-DX-A8BP-01 11 5373381 5373381 C T OR51B6 Missense_Mutation p.S215F 0.21 deleterious(0) possibly_damaging(0.873) TCGA-DX-A8BP-01 11 55322305 55322305 C T OR4C15 Missense_Mutation p.R175C 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.897) TCGA-DX-A8BP-01 11 55579026 55579026 C T OR5L1 Silent p.F28F 0.20 TCGA-DX-A8BP-01 11 5566669 5566669 C T OR52H1 Missense_Mutation p.E29K 0.28 deleterious(0.01) benign(0.41) TCGA-DX-A8BP-01 11 57581826 57581826 A T CTNND1 Silent p.G894G 0.15 TCGA-DX-A8BP-01 11 5776913 5776913 G A OR52N4 Missense_Mutation p.D315N 0.21 tolerated(0.36) benign(0.002) TCGA-DX-A8BP-01 11 57958889 57958889 G A OR9Q2 Silent p.K309K 0.54 TCGA-DX-A8BP-01 11 5878606 5878606 G A OR52E8 Silent p.F109F 0.40 TCGA-DX-A8BP-01 11 58973186 58973186 G A DTX4 3'UTR 0.21 TCGA-DX-A8BP-01 11 59189645 59189645 A T OR5A2 Missense_Mutation p.M261K 0.16 deleterious(0) possibly_damaging(0.734) TCGA-DX-A8BP-01 11 59540716 59540716 G A STX3 Silent p.A21A 0.28 TCGA-DX-A8BP-01 11 60068484 60068484 C T MS4A4A Missense_Mutation p.S114L 0.16 deleterious(0) possibly_damaging(0.873) TCGA-DX-A8BP-01 11 61961007 61961007 C T SCGB1D1 3'UTR 0.19 TCGA-DX-A8BP-01 11 62298205 62298205 A T AHNAK Missense_Mutation p.D1228E 0.24 benign(0.124) TCGA-DX-A8BP-01 11 62761059 62761059 C T SLC22A8 Missense_Mutation p.G456R 0.16 deleterious(0.01) probably_damaging(1) TCGA-DX-A8BP-01 11 62931545 62931545 C T SLC22A25 Silent p.R465R 0.24 TCGA-DX-A8BP-01 11 63235916 63235916 C A HRASLS5 Nonsense_Mutation p.G133* 0.39 TCGA-DX-A8BP-01 11 64111796 64111796 A G CCDC88B Missense_Mutation p.R595G 0.35 tolerated_low_confidence(1) benign(0) TCGA-DX-A8BP-01 11 64532986 64532986 G A SF1 Silent p.S654S 0.16 TCGA-DX-A8BP-01 11 64693295 64693295 G A PPP2R5B Missense_Mutation p.G30D 0.27 tolerated(0.28) probably_damaging(0.992) TCGA-DX-A8BP-01 11 64714912 64714912 C T C11orf85 Missense_Mutation p.G136E 0.14 tolerated(0.87) probably_damaging(0.998) TCGA-DX-A8BP-01 11 64812260 64812260 C T SAC3D1 3'UTR 0.21 TCGA-DX-A8BP-01 11 66276805 66276805 G A DPP3 3'UTR 0.41 TCGA-DX-A8BP-01 11 66384354 66384354 C T RBM14-RBM4 Silent p.L55L 0.40 TCGA-DX-A8BP-01 11 67191590 67191590 G A CARNS1 Missense_Mutation p.G791R 0.41 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 11 67219867 67219867 A G GPR152 Missense_Mutation p.L110P 0.14 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 11 67220225 67220225 G A CABP4 5'Flank 0.21 TCGA-DX-A8BP-01 11 67763181 67763181 A G UNC93B1 Missense_Mutation p.W421R 0.20 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BP-01 11 73080029 73080029 C T ARHGEF17 3'UTR 0.44 TCGA-DX-A8BP-01 11 74415582 74415582 C T CHRDL2 Missense_Mutation p.G234R 0.33 deleterious(0) benign(0.159) TCGA-DX-A8BP-01 11 74521252 74521252 G A RNF169 Silent p.E200E 0.34 TCGA-DX-A8BP-01 11 75852245 75852245 G T UVRAG Nonsense_Mutation p.E630* 0.19 TCGA-DX-A8BP-01 11 7818215 7818215 C T OR5P2 Missense_Mutation p.G92E 0.12 deleterious(0.02) benign(0.32) TCGA-DX-A8BP-01 11 7818216 7818216 C T OR5P2 Missense_Mutation p.G92R 0.12 deleterious(0.01) probably_damaging(0.962) TCGA-DX-A8BP-01 11 8008845 8008845 C T EIF3F 5'UTR 0.30 TCGA-DX-A8BP-01 11 828557 828557 C T EFCAB4A 5'UTR 0.25 TCGA-DX-A8BP-01 11 8704294 8704294 C T RPL27A 5'UTR 0.17 TCGA-DX-A8BP-01 11 8747717 8747717 G A ST5 Silent p.S460S 0.25 TCGA-DX-A8BP-01 11 93118697 93118697 G A CCDC67 Missense_Mutation p.G308E 0.08 tolerated(1) benign(0.001) TCGA-DX-A8BP-01 11 94801731 94801731 C T SRSF8 3'UTR 0.26 TCGA-DX-A8BP-01 12 101133633 101133633 T C ANO4 Silent p.G36G 0.28 TCGA-DX-A8BP-01 12 109634872 109634872 T C ACACB Silent p.I847I 0.11 TCGA-DX-A8BP-01 12 11183124 11183124 A G TAS2R31 Missense_Mutation p.Y271H 0.19 deleterious(0.05) possibly_damaging(0.654) TCGA-DX-A8BP-01 12 114404172 114404172 G A RBM19 5'Flank 0.42 TCGA-DX-A8BP-01 12 117891426 117891426 G A RP11-227B21.2 Intron 0.18 TCGA-DX-A8BP-01 12 117977684 117977684 G A KSR2 Silent p.I509I 0.33 TCGA-DX-A8BP-01 12 120148136 120148136 G A CIT Missense_Mutation p.S1664F 0.36 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BP-01 12 120580481 120580481 C T GCN1L1 Missense_Mutation p.A1887T 0.23 possibly_damaging(0.556) TCGA-DX-A8BP-01 12 120580482 120580482 C T GCN1L1 Silent p.L1886L 0.21 TCGA-DX-A8BP-01 12 123950888 123950888 C T SNRNP35 3'Flank 0.17 TCGA-DX-A8BP-01 12 124130028 124130028 C T GTF2H3 Silent p.A40A 0.13 TCGA-DX-A8BP-01 12 124163786 124163786 C T TCTN2 Missense_Mutation p.P172S 0.11 deleterious(0.05) possibly_damaging(0.517) TCGA-DX-A8BP-01 12 124163787 124163787 C T TCTN2 Missense_Mutation p.P172L 0.12 deleterious(0) benign(0.25) TCGA-DX-A8BP-01 12 125420220 125420220 C T RPL22P19 RNA 0.25 TCGA-DX-A8BP-01 12 126138387 126138387 G A TMEM132B Missense_Mutation p.E790K 0.33 tolerated(0.08) benign(0.115) TCGA-DX-A8BP-01 12 128899448 128899448 C T TMEM132C Missense_Mutation p.T86I 0.30 tolerated(1) benign(0.001) TCGA-DX-A8BP-01 12 131620690 131620690 C T GPR133 Silent p.A792A 0.10 TCGA-DX-A8BP-01 12 132445290 132445290 C T EP400 Silent p.F42F 0.21 TCGA-DX-A8BP-01 12 132466722 132466722 C T EP400 Missense_Mutation p.P543L 0.28 unknown(0) TCGA-DX-A8BP-01 12 132562134 132562134 C T EP400 Silent p.S3096S 0.22 TCGA-DX-A8BP-01 12 132588701 132588701 C T EP400NL Silent p.L46L 0.15 TCGA-DX-A8BP-01 12 133196052 133196052 C T P2RX2 Silent p.Y67Y 0.18 TCGA-DX-A8BP-01 12 133237724 133237724 G A POLE Missense_Mutation p.S964F 0.30 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BP-01 12 133446393 133446393 C T CHFR Missense_Mutation p.G144E 0.36 tolerated(0.61) benign(0.001) TCGA-DX-A8BP-01 12 14792796 14792796 T C GUCY2C Silent p.E719E 0.29 TCGA-DX-A8BP-01 12 18234192 18234192 G A RERGL Missense_Mutation p.P184L 0.20 tolerated(0.41) benign(0.005) TCGA-DX-A8BP-01 12 19511189 19511189 C T PLEKHA5 Missense_Mutation p.L1056F 0.19 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BP-01 12 20858969 20858969 G A SLCO1C1 Missense_Mutation p.G120R 0.17 deleterious(0) probably_damaging(0.965) TCGA-DX-A8BP-01 12 21242954 21242954 G A SLCO1B7 Missense_Mutation p.E613K 0.17 tolerated(0.13) benign(0.071) TCGA-DX-A8BP-01 12 21370151 21370151 G A SLCO1B1 Silent p.R532R 0.20 TCGA-DX-A8BP-01 12 21428334 21428334 G A SLCO1A2 Silent p.S545S 0.20 TCGA-DX-A8BP-01 12 21450399 21450399 G A SLCO1A2 Silent p.F338F 0.36 TCGA-DX-A8BP-01 12 26634139 26634139 A T ITPR2 Missense_Mutation p.D2016E 0.29 deleterious(0) possibly_damaging(0.657) TCGA-DX-A8BP-01 12 2786469 2786469 C T CACNA1C Intron 0.31 TCGA-DX-A8BP-01 12 32908628 32908628 G A YARS2 Missense_Mutation p.L61F 0.19 deleterious(0.01) probably_damaging(0.927) TCGA-DX-A8BP-01 12 32974432 32974432 T C PKP2 Missense_Mutation p.K668R 0.28 tolerated(0.05) benign(0.109) TCGA-DX-A8BP-01 12 392835 392835 G A KDM5A 3'UTR 0.29 TCGA-DX-A8BP-01 12 41421661 41421661 C T CNTN1 Missense_Mutation p.P905S 0.15 deleterious(0.02) probably_damaging(1) TCGA-DX-A8BP-01 12 42554627 42554627 G A YAF2 Missense_Mutation p.P127S 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-DX-A8BP-01 12 43771331 43771331 C T ADAMTS20 Missense_Mutation p.R1611K 0.21 tolerated(0.06) benign(0.108) TCGA-DX-A8BP-01 12 4609389 4609389 C A C12orf4 Missense_Mutation p.G452V 0.25 deleterious(0) possibly_damaging(0.836) TCGA-DX-A8BP-01 12 46752778 46752778 C T SLC38A2 3'UTR 0.40 TCGA-DX-A8BP-01 12 49959887 49959887 G A MCRS1 Missense_Mutation p.T54I 0.22 tolerated(0.09) benign(0.001) TCGA-DX-A8BP-01 12 5026217 5026217 T C KCNA1 3'UTR 0.18 TCGA-DX-A8BP-01 12 5026219 5026219 C T KCNA1 3'UTR 0.19 TCGA-DX-A8BP-01 12 51632616 51632616 G A DAZAP2 5'UTR 0.19 TCGA-DX-A8BP-01 12 52078031 52078031 C T SCN8A Missense_Mutation p.P117L 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-DX-A8BP-01 12 53169174 53169174 C T KRT76 Silent p.K271K 0.28 TCGA-DX-A8BP-01 12 55615216 55615216 G A OR10A7 Missense_Mutation p.M136I 0.38 deleterious(0.01) possibly_damaging(0.851) TCGA-DX-A8BP-01 12 56109896 56109896 C T BLOC1S1 Missense_Mutation p.P21S 0.12 deleterious_low_confidence(0.04) unknown(0) TCGA-DX-A8BP-01 12 57859404 57859404 G A GLI1 Silent p.L183L 0.38 TCGA-DX-A8BP-01 12 58015566 58015566 G A SLC26A10 Missense_Mutation p.E217K 0.33 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BP-01 12 6078495 6078495 C T VWF Silent p.K2537K 0.33 TCGA-DX-A8BP-01 12 62798570 62798570 C T USP15 3'UTR 0.56 TCGA-DX-A8BP-01 12 6438569 6438569 C T TNFRSF1A Missense_Mutation p.R426H 0.39 tolerated(0.17) probably_damaging(0.939) TCGA-DX-A8BP-01 12 70748521 70748521 G A CNOT2 3'UTR 0.38 TCGA-DX-A8BP-01 12 71139627 71139627 G A PTPRR Silent p.F326F 0.14 TCGA-DX-A8BP-01 12 72355441 72355441 G A TPH2 Intron 0.25 TCGA-DX-A8BP-01 12 73057156 73057156 C T TRHDE 3'UTR 0.20 TCGA-DX-A8BP-01 12 74933876 74933876 C G ATXN7L3B 3'UTR 0.23 TCGA-DX-A8BP-01 12 74933878 74933878 C T ATXN7L3B 3'UTR 0.24 TCGA-DX-A8BP-01 12 9072388 9072388 C T PHC1 Nonsense_Mutation p.Q51* 0.30 TCGA-DX-A8BP-01 12 91348922 91348922 G A CCER1 5'UTR 0.23 TCGA-DX-A8BP-01 12 9840655 9840655 T C CLEC2D Silent p.L110L 0.23 TCGA-DX-A8BP-01 13 109318260 109318260 C T MYO16 5'UTR 0.38 TCGA-DX-A8BP-01 13 111532383 111532383 G A ANKRD10 Silent p.S288S 0.33 TCGA-DX-A8BP-01 13 113743994 113743994 G A MCF2L Missense_Mutation p.G969R 0.65 tolerated(0.07) possibly_damaging(0.894) TCGA-DX-A8BP-01 13 114514803 114514803 C T TMEM255B Missense_Mutation p.P303L 0.34 deleterious(0) possibly_damaging(0.49) TCGA-DX-A8BP-01 13 19751361 19751361 T A TUBA3C Missense_Mutation p.E254D 0.33 deleterious_low_confidence(0.02) probably_damaging(0.986) TCGA-DX-A8BP-01 13 23912516 23912516 G A SACS Silent p.S1833S 0.45 TCGA-DX-A8BP-01 13 27246073 27246073 G A WASF3 Missense_Mutation p.E163K 0.57 deleterious(0.01) possibly_damaging(0.619) TCGA-DX-A8BP-01 13 28867990 28867990 C T PAN3 3'Flank 0.36 TCGA-DX-A8BP-01 13 32332451 32332451 C T RXFP2 Missense_Mutation p.P51S 0.29 deleterious(0.02) possibly_damaging(0.893) TCGA-DX-A8BP-01 13 36220063 36220063 A C NBEA Intron 0.31 TCGA-DX-A8BP-01 13 36223825 36223825 G A NBEA Missense_Mutation p.D2581N 0.41 tolerated(0.14) benign(0.04) TCGA-DX-A8BP-01 13 46288569 46288569 C T SPERT 3'UTR 0.38 TCGA-DX-A8BP-01 13 46288570 46288570 C T SPERT 3'UTR 0.40 TCGA-DX-A8BP-01 14 100188313 100188313 G A CYP46A1 Silent p.R362R 0.20 TCGA-DX-A8BP-01 14 100758612 100758612 G A SLC25A29 3'UTR 0.22 TCGA-DX-A8BP-01 14 101489702 101489702 A C MIR411 RNA 0.33 TCGA-DX-A8BP-01 14 102482702 102482702 C T DYNC1H1 Missense_Mutation p.A2497V 0.34 possibly_damaging(0.641) TCGA-DX-A8BP-01 14 103568582 103568582 C T EXOC3L4 Silent p.A174A 0.16 TCGA-DX-A8BP-01 14 105618337 105618337 G A JAG2 Missense_Mutation p.A326V 0.20 deleterious(0.03) benign(0.02) TCGA-DX-A8BP-01 14 105859167 105859167 G A PACS2 Missense_Mutation p.E823K 0.25 deleterious(0) benign(0.045) TCGA-DX-A8BP-01 14 106173589 106173589 C T IGHA1 Silent p.Q326Q 0.14 TCGA-DX-A8BP-01 14 107078514 107078514 G A IGHV1-58 Silent p.I70I 0.24 TCGA-DX-A8BP-01 14 19377829 19377829 G A OR11H12 Missense_Mutation p.G79E 0.29 deleterious(0.01) possibly_damaging(0.461) TCGA-DX-A8BP-01 14 19904329 19904329 G A BMS1P18 RNA 0.26 TCGA-DX-A8BP-01 14 20502028 20502028 G A OR4K13 Missense_Mutation p.A297V 0.21 deleterious(0.02) benign(0.259) TCGA-DX-A8BP-01 14 21168070 21168070 C T RNASE4 3'UTR 0.36 TCGA-DX-A8BP-01 14 23315342 23315342 C T MMP14 3'UTR 0.38 TCGA-DX-A8BP-01 14 23595198 23595198 G A SLC7A8 3'UTR 0.24 TCGA-DX-A8BP-01 14 23795336 23795336 T A PABPN1 3'UTR 0.25 TCGA-DX-A8BP-01 14 23889067 23889067 A C MYH7 Missense_Mutation p.I1238S 0.12 deleterious(0.05) possibly_damaging(0.47) TCGA-DX-A8BP-01 14 23995703 23995703 C T ZFHX2 Missense_Mutation p.E1150K 0.17 possibly_damaging(0.81) TCGA-DX-A8BP-01 14 24033590 24033590 G C AP1G2 Missense_Mutation p.A310G 0.21 tolerated(0.2) probably_damaging(0.999) TCGA-DX-A8BP-01 14 24542163 24542163 G A CPNE6 Missense_Mutation p.M6I 0.20 tolerated(0.05) benign(0) TCGA-DX-A8BP-01 14 24631361 24631361 C T IRF9 Missense_Mutation p.S3L 0.11 deleterious(0) benign(0.23) TCGA-DX-A8BP-01 14 24731502 24731502 G A TGM1 Silent p.P19P 0.24 TCGA-DX-A8BP-01 14 24775214 24775214 A C CIDEB Missense_Mutation p.F156V 0.18 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BP-01 14 24809177 24809177 C G RIPK3 5'UTR 0.17 TCGA-DX-A8BP-01 14 24809178 24809178 C T RIPK3 5'UTR 0.17 TCGA-DX-A8BP-01 14 26916477 26916477 G A NOVA1 3'UTR 0.19 TCGA-DX-A8BP-01 14 27018943 27018943 C T NOVA1 Intron 0.16 TCGA-DX-A8BP-01 14 30046618 30046618 G A PRKD1 Silent p.I855I 0.26 TCGA-DX-A8BP-01 14 32560023 32560023 T C ARHGAP5 Missense_Mutation p.Y50H 0.20 tolerated(0.81) benign(0.003) TCGA-DX-A8BP-01 14 34263252 34263252 T C NPAS3 Splice_Site p.X434_splice 0.15 TCGA-DX-A8BP-01 14 36074835 36074835 C T RALGAPA1 Missense_Mutation p.G1831E 0.15 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 14 42356729 42356729 G A LRFN5 Missense_Mutation p.G301R 0.27 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 14 51094955 51094955 C T ATL1 Silent p.F442F 0.18 TCGA-DX-A8BP-01 14 57268185 57268185 T A OTX2 3'UTR 0.29 TCGA-DX-A8BP-01 14 63841720 63841720 G A PPP2R5E 3'UTR 0.20 TCGA-DX-A8BP-01 14 69707882 69707882 C T EXD2 3'UTR 0.25 TCGA-DX-A8BP-01 14 69707883 69707883 C T EXD2 3'UTR 0.25 TCGA-DX-A8BP-01 14 70634809 70634809 C T SLC8A3 Missense_Mutation p.E111K 0.27 tolerated(0.08) benign(0.119) TCGA-DX-A8BP-01 14 70925007 70925007 G A ADAM21 Missense_Mutation p.G264E 0.16 tolerated(0.83) benign(0.013) TCGA-DX-A8BP-01 14 72054645 72054645 C T SIPA1L1 Missense_Mutation p.S19F 0.16 deleterious(0) benign(0.143) TCGA-DX-A8BP-01 14 74180001 74180001 C T PNMA1 Nonsense_Mutation p.W114* 0.26 TCGA-DX-A8BP-01 14 78353483 78353483 C T ADCK1 Missense_Mutation p.S158F 0.17 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 14 80329403 80329403 G A NRXN3 3'Flank 0.13 TCGA-DX-A8BP-01 14 95034521 95034521 T C SERPINA4 Missense_Mutation p.Y327H 0.12 deleterious(0.04) benign(0.423) TCGA-DX-A8BP-01 14 95562579 95562579 C T DICER1 Missense_Mutation p.A1560T 0.31 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 15 100332542 100332542 C T AC090825.1 RNA 0.19 TCGA-DX-A8BP-01 15 100672345 100672345 C T ADAMTS17 Missense_Mutation p.G530R 0.18 tolerated(0.14) benign(0.038) TCGA-DX-A8BP-01 15 100672346 100672346 C T ADAMTS17 Silent p.A529A 0.19 TCGA-DX-A8BP-01 15 100801831 100801831 G A ADAMTS17 Missense_Mutation p.S295F 0.17 tolerated(0.51) benign(0.135) TCGA-DX-A8BP-01 15 23810930 23810930 A G MKRN3 Translation_Start_Site p.M1? 0.28 deleterious(0) unknown(0) TCGA-DX-A8BP-01 15 23810931 23810931 T C MKRN3 Translation_Start_Site p.M1? 0.27 deleterious(0) unknown(0) TCGA-DX-A8BP-01 15 24925700 24925700 C T NPAP1 3'UTR 0.18 TCGA-DX-A8BP-01 15 26790379 26790379 A T GABRB3 3'UTR 0.27 TCGA-DX-A8BP-01 15 28474893 28474893 C T HERC2 Missense_Mutation p.S1637N 0.22 benign(0) TCGA-DX-A8BP-01 15 31294646 31294646 G A TRPM1 Silent p.N1436N 0.22 TCGA-DX-A8BP-01 15 31319224 31319224 G A TRPM1 Silent p.P1147P 0.16 TCGA-DX-A8BP-01 15 41105991 41105991 C T ZFYVE19 Silent p.P397P 0.13 TCGA-DX-A8BP-01 15 41573804 41573804 G A CHP1 3'UTR 0.34 TCGA-DX-A8BP-01 15 42060270 42060270 A G MGA 3'UTR 0.40 TCGA-DX-A8BP-01 15 42092030 42092030 G A MAPKBP1 Missense_Mutation p.E42K 0.17 deleterious(0) possibly_damaging(0.881) TCGA-DX-A8BP-01 15 43891565 43891565 C T CKMT1B 3'UTR 0.30 TCGA-DX-A8BP-01 15 43891566 43891566 C T CKMT1B 3'UTR 0.30 TCGA-DX-A8BP-01 15 44102103 44102103 C T MFAP1 Silent p.K299K 0.32 TCGA-DX-A8BP-01 15 45427811 45427811 C T DUOX1 Missense_Mutation p.P212L 0.23 tolerated(0.3) benign(0.039) TCGA-DX-A8BP-01 15 45559941 45559941 G A SLC28A2 Silent p.P382P 0.26 TCGA-DX-A8BP-01 15 49431802 49431802 T A COPS2 Missense_Mutation p.I99F 0.39 deleterious(0) possibly_damaging(0.474) TCGA-DX-A8BP-01 15 51773132 51773132 T A DMXL2 Silent p.T2057T 0.21 TCGA-DX-A8BP-01 15 52356868 52356868 G A MAPK6 Missense_Mutation p.V613I 0.24 tolerated_low_confidence(0.21) benign(0.004) TCGA-DX-A8BP-01 15 52517672 52517672 C T MYO5C Missense_Mutation p.E1089K 0.32 tolerated(0.1) possibly_damaging(0.83) TCGA-DX-A8BP-01 15 53809908 53809908 G T WDR72 Nonsense_Mutation p.C1099* 0.17 TCGA-DX-A8BP-01 15 59323147 59323147 C T RNF111 Silent p.P42P 0.12 TCGA-DX-A8BP-01 15 62994352 62994352 G A TLN2 Missense_Mutation p.G620R 0.35 tolerated(0.1) possibly_damaging(0.703) TCGA-DX-A8BP-01 15 63901279 63901279 G A HERC1 3'UTR 0.22 TCGA-DX-A8BP-01 15 63955209 63955209 G A HERC1 Missense_Mutation p.P2959S 0.30 probably_damaging(0.998) TCGA-DX-A8BP-01 15 64966588 64966588 T C ZNF609 Missense_Mutation p.L512P 0.16 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 15 66790148 66790148 G A SNAPC5 5'UTR 0.19 TCGA-DX-A8BP-01 15 67599186 67599186 A G IQCH Intron 0.13 TCGA-DX-A8BP-01 15 72557480 72557480 C T PARP6 Silent p.R90R 0.23 TCGA-DX-A8BP-01 15 74888205 74888205 G A ARID3B 3'UTR 0.22 TCGA-DX-A8BP-01 15 75045534 75045534 G A CYP1A2 Silent p.R392R 0.22 TCGA-DX-A8BP-01 15 75585481 75585481 G A GOLGA6D Silent p.E523E 0.10 TCGA-DX-A8BP-01 15 77407240 77407240 A G PEAK1 Missense_Mutation p.L1500P 0.33 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 15 78213716 78213716 G A RP11-114H24.7 Intron 0.24 TCGA-DX-A8BP-01 15 81654619 81654619 G A TMC3 Silent p.L112L 0.32 TCGA-DX-A8BP-01 15 83345378 83345378 G A AP3B2 Silent p.A500A 0.19 TCGA-DX-A8BP-01 15 89398803 89398803 C T ACAN Missense_Mutation p.P996L 0.21 deleterious(0.01) benign(0.348) TCGA-DX-A8BP-01 15 89400698 89400698 G A ACAN Missense_Mutation p.G1628R 0.32 deleterious(0.02) probably_damaging(0.994) TCGA-DX-A8BP-01 15 89402502 89402502 C T ACAN Missense_Mutation p.P2229L 0.11 tolerated(0.26) possibly_damaging(0.734) TCGA-DX-A8BP-01 15 90188623 90188623 C T KIF7 Missense_Mutation p.R661K 0.18 tolerated(0.61) benign(0.021) TCGA-DX-A8BP-01 15 90550017 90550017 C T ZNF710 Intron 0.19 TCGA-DX-A8BP-01 15 91479208 91479208 C T UNC45A Silent p.S82S 0.29 TCGA-DX-A8BP-01 15 99500879 99500879 C T IGF1R 3'UTR 0.13 TCGA-DX-A8BP-01 16 10527500 10527500 G A ATF7IP2 Silent p.L318L 0.29 TCGA-DX-A8BP-01 16 15221854 15221854 G A RP11-1186N24.5 RNA 0.33 TCGA-DX-A8BP-01 16 20975047 20975047 C T DNAH3 Missense_Mutation p.E3387K 0.38 tolerated(0.53) benign(0.001) TCGA-DX-A8BP-01 16 2139424 2139424 G A PKD1 3'UTR 0.25 TCGA-DX-A8BP-01 16 24231511 24231511 G A PRKCB 3'UTR 0.45 TCGA-DX-A8BP-01 16 24581514 24581514 C T RBBP6 Missense_Mutation p.S1168L 0.38 tolerated_low_confidence(0.12) unknown(0) TCGA-DX-A8BP-01 16 2812826 2812826 G A SRRM2 Missense_Mutation p.R766Q 0.53 unknown(0) TCGA-DX-A8BP-01 16 28607650 28607650 C T SULT1A2 5'UTR 0.24 TCGA-DX-A8BP-01 16 2998903 2998903 C T FLYWCH1 3'UTR 0.33 TCGA-DX-A8BP-01 16 30734989 30734989 T C SRCAP Missense_Mutation p.M1415T 0.15 benign(0.042) TCGA-DX-A8BP-01 16 3100110 3100110 C T MMP25 Silent p.S111S 0.26 TCGA-DX-A8BP-01 16 31044812 31044812 C T STX4 5'UTR 0.21 TCGA-DX-A8BP-01 16 4242486 4242486 C T SRL Missense_Mutation p.G364R 0.18 tolerated(0.49) benign(0.299) TCGA-DX-A8BP-01 16 48162475 48162475 C T ABCC12 Silent p.E470E 0.19 TCGA-DX-A8BP-01 16 57061990 57061990 G A NLRC5 Silent p.K694K 0.26 TCGA-DX-A8BP-01 16 57447907 57447907 C T CCL17 Silent p.I21I 0.15 TCGA-DX-A8BP-01 16 684524 684524 G A C16orf13 3'UTR 0.37 TCGA-DX-A8BP-01 16 740246 740246 G A WDR24 5'UTR 0.40 TCGA-DX-A8BP-01 16 740247 740247 G A WDR24 5'UTR 0.38 TCGA-DX-A8BP-01 16 74662523 74662523 G A RFWD3 Missense_Mutation p.S599L 0.29 deleterious(0.02) benign(0.427) TCGA-DX-A8BP-01 16 74662525 74662525 G A RFWD3 Silent p.A598A 0.29 TCGA-DX-A8BP-01 16 76573705 76573705 C T CNTNAP4 Missense_Mutation p.H1031Y 0.31 deleterious(0.02) possibly_damaging(0.461) TCGA-DX-A8BP-01 16 77334275 77334275 C T ADAMTS18 Silent p.G853G 0.28 TCGA-DX-A8BP-01 16 88496326 88496326 C T ZNF469 Silent p.F816F 0.50 TCGA-DX-A8BP-01 16 88907447 88907447 C T GALNS Silent p.P125P 0.28 TCGA-DX-A8BP-01 17 10363547 10363547 G A MYH4 Silent p.F413F 0.45 TCGA-DX-A8BP-01 17 11607592 11607592 T C DNAH9 Missense_Mutation p.Y1742H 0.21 benign(0.03) TCGA-DX-A8BP-01 17 13400075 13400075 G A HS3ST3A1 Silent p.F220F 0.15 TCGA-DX-A8BP-01 17 15909809 15909809 C T TTC19 Silent p.G201G 0.30 TCGA-DX-A8BP-01 17 19316653 19316653 G A RNF112 Missense_Mutation p.G217S 0.42 tolerated(0.05) probably_damaging(0.95) TCGA-DX-A8BP-01 17 2090028 2090028 G A SMG6 Silent p.V1028V 0.48 TCGA-DX-A8BP-01 17 21319598 21319598 C T KCNJ12 Missense_Mutation p.S315F 0.08 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 17 25640163 25640163 G A WSB1 3'UTR 0.28 TCGA-DX-A8BP-01 17 25749685 25749685 G A TBC1D3P5 RNA 0.29 TCGA-DX-A8BP-01 17 263813 263813 C T C17orf97 Silent p.P393P 0.24 TCGA-DX-A8BP-01 17 26679948 26679948 G A POLDIP2 Silent p.D203D 0.09 TCGA-DX-A8BP-01 17 26817366 26817366 G A SLC13A2 Silent p.G91G 0.39 TCGA-DX-A8BP-01 17 27818848 27818848 C T TAOK1 Missense_Mutation p.P266S 0.31 tolerated(0.06) possibly_damaging(0.78) TCGA-DX-A8BP-01 17 28548792 28548792 G A SLC6A4 Missense_Mutation p.S62F 0.25 deleterious(0.02) benign(0.225) TCGA-DX-A8BP-01 17 2908721 2908721 C T RAP1GAP2 Missense_Mutation p.P420L 0.28 deleterious(0.01) possibly_damaging(0.493) TCGA-DX-A8BP-01 17 29205036 29205036 G A ATAD5 Missense_Mutation p.D1312N 0.29 deleterious(0) probably_damaging(0.928) TCGA-DX-A8BP-01 17 29588840 29588840 C T NF1 Silent p.N1563N 0.29 TCGA-DX-A8BP-01 17 29588841 29588841 C T NF1 Missense_Mutation p.L1564F 0.29 tolerated(0.13) probably_damaging(0.986) TCGA-DX-A8BP-01 17 29622771 29622771 G A OMG Silent p.L193L 0.21 TCGA-DX-A8BP-01 17 29622773 29622773 G A OMG Missense_Mutation p.L193F 0.20 deleterious(0) probably_damaging(0.996) TCGA-DX-A8BP-01 17 36699353 36699353 C T SRCIN1 Intron 0.19 TCGA-DX-A8BP-01 17 36714581 36714581 T C SRCIN1 Missense_Mutation p.M695V 0.15 tolerated(0.81) benign(0) TCGA-DX-A8BP-01 17 37374401 37374401 G A STAC2 Missense_Mutation p.S39F 0.20 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BP-01 17 38511541 38511541 C T RARA Missense_Mutation p.R347W 0.15 deleterious(0) possibly_damaging(0.907) TCGA-DX-A8BP-01 17 39412008 39412008 C T KRTAP9-9 Missense_Mutation p.P124L 0.24 deleterious(0.03) probably_damaging(0.911) TCGA-DX-A8BP-01 17 39525831 39525831 C T KRT33B Missense_Mutation p.E58K 0.27 deleterious(0.02) probably_damaging(0.938) TCGA-DX-A8BP-01 17 39525832 39525832 C T KRT33B Silent p.K57K 0.27 TCGA-DX-A8BP-01 17 40095403 40095403 G A TTC25 RNA 0.40 TCGA-DX-A8BP-01 17 4075911 4075911 G C ANKFY1 Missense_Mutation p.L1069V 0.23 tolerated(0.1) possibly_damaging(0.779) TCGA-DX-A8BP-01 17 41020250 41020250 G A AOC4P RNA 0.13 TCGA-DX-A8BP-01 17 41166396 41166396 C T IFI35 3'UTR 0.40 TCGA-DX-A8BP-01 17 41931256 41931256 C T CD300LG Missense_Mutation p.S188F 0.21 deleterious(0) possibly_damaging(0.674) TCGA-DX-A8BP-01 17 42169558 42169558 G A HDAC5 Silent p.V339V 0.24 TCGA-DX-A8BP-01 17 42255007 42255007 G A ASB16 Missense_Mutation p.A365T 0.33 tolerated(1) benign(0.034) TCGA-DX-A8BP-01 17 42283880 42283880 T A UBTF 3'UTR 0.33 TCGA-DX-A8BP-01 17 42327797 42327797 G A SLC4A1 3'UTR 0.14 TCGA-DX-A8BP-01 17 42327798 42327798 G A SLC4A1 3'UTR 0.14 TCGA-DX-A8BP-01 17 44128057 44128057 C T KANSL1 Missense_Mutation p.S621N 0.08 tolerated(0.08) benign(0.011) TCGA-DX-A8BP-01 17 46474066 46474066 C T SKAP1 Missense_Mutation p.R43Q 0.26 tolerated(0.06) possibly_damaging(0.476) TCGA-DX-A8BP-01 17 48545985 48545985 G A CHAD Missense_Mutation p.P64S 0.19 tolerated(0.38) possibly_damaging(0.848) TCGA-DX-A8BP-01 17 49279025 49279025 G A MBTD1 Silent p.F384F 0.25 TCGA-DX-A8BP-01 17 4996692 4996692 G A ZFP3 3'UTR 0.19 TCGA-DX-A8BP-01 17 51902212 51902212 G A KIF2B Silent p.G606G 0.22 TCGA-DX-A8BP-01 17 51902398 51902398 G A KIF2B Silent p.V668V 0.20 TCGA-DX-A8BP-01 17 56281639 56281639 G A EPX Missense_Mutation p.R668K 0.21 tolerated(1) benign(0.004) TCGA-DX-A8BP-01 17 56355503 56355503 G A MPO Missense_Mutation p.P297S 0.19 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 17 59543182 59543182 G A TBX4 Missense_Mutation p.R95K 0.21 deleterious(0) benign(0.146) TCGA-DX-A8BP-01 17 59945019 59945019 C T INTS2 Missense_Mutation p.G1172R 0.33 tolerated_low_confidence(0.56) benign(0.261) TCGA-DX-A8BP-01 17 61498206 61498206 C T TANC2 Silent p.A1621A 0.19 TCGA-DX-A8BP-01 17 62750560 62750560 G A hsa-mir-6080 RNA 0.18 TCGA-DX-A8BP-01 17 62851978 62851978 T G LRRC37A3 Missense_Mutation p.E1613D 0.20 tolerated(0.08) possibly_damaging(0.505) TCGA-DX-A8BP-01 17 62893129 62893129 C T LRRC37A3 Missense_Mutation p.D83N 0.12 tolerated(0.3) benign(0.01) TCGA-DX-A8BP-01 17 64880855 64880855 G A CACNG5 Intron 0.14 TCGA-DX-A8BP-01 17 65026810 65026810 C T CACNG4 Missense_Mutation p.S225F 0.10 deleterious(0) possibly_damaging(0.681) TCGA-DX-A8BP-01 17 6554934 6554934 C T MED31 5'UTR 0.27 TCGA-DX-A8BP-01 17 7138874 7138874 G A PHF23 3'UTR 0.12 TCGA-DX-A8BP-01 17 73839111 73839111 C T UNC13D Missense_Mutation p.R102Q 0.35 tolerated(0.38) benign(0.006) TCGA-DX-A8BP-01 17 74019442 74019442 G A EVPL Silent p.Y137Y 0.30 TCGA-DX-A8BP-01 17 74473267 74473267 G A RHBDF2 Silent p.I334I 0.24 TCGA-DX-A8BP-01 17 7475926 7475926 G A SENP3 3'Flank 0.33 TCGA-DX-A8BP-01 17 7578527 7578527 A G TP53 Missense_Mutation p.C135R 0.52 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 17 76201264 76201264 C T AFMID Silent p.N186N 0.28 TCGA-DX-A8BP-01 17 76399984 76399984 T A PGS1 Missense_Mutation p.Y406N 0.36 deleterious(0.04) possibly_damaging(0.885) TCGA-DX-A8BP-01 17 7726772 7726772 G A DNAH2 Missense_Mutation p.E3719K 0.28 benign(0.074) TCGA-DX-A8BP-01 17 78013860 78013860 C T CCDC40 Missense_Mutation p.P115S 0.16 tolerated_low_confidence(1) benign(0) TCGA-DX-A8BP-01 17 78319813 78319813 C T RNF213 Missense_Mutation p.P2560S 0.25 probably_damaging(1) TCGA-DX-A8BP-01 17 79165000 79165000 C T AZI1 Missense_Mutation p.E920K 0.25 deleterious(0.02) probably_damaging(0.95) TCGA-DX-A8BP-01 17 79911073 79911073 G A NOTUM Missense_Mutation p.H419Y 0.16 tolerated(0.14) benign(0.309) TCGA-DX-A8BP-01 17 80115687 80115687 C T CCDC57 Silent p.G726G 0.20 TCGA-DX-A8BP-01 17 80197824 80197824 G A CSNK1D 3'Flank 0.25 TCGA-DX-A8BP-01 17 8046790 8046790 G A PER1 Missense_Mutation p.P956S 0.15 tolerated(0.09) benign(0.01) TCGA-DX-A8BP-01 17 80560843 80560843 G C FOXK2 3'UTR 0.13 TCGA-DX-A8BP-01 17 8110634 8110634 G A AURKB Silent p.G86G 0.15 TCGA-DX-A8BP-01 17 9536293 9536293 C T WDR16 Silent p.T421T 0.36 TCGA-DX-A8BP-01 18 15316753 15316753 C T RNU6-721P 3'Flank 0.18 TCGA-DX-A8BP-01 18 20833772 20833772 T C CABLES1 Missense_Mutation p.F545L 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-DX-A8BP-01 18 22806847 22806847 G A ZNF521 Silent p.S345S 0.20 TCGA-DX-A8BP-01 18 29118894 29118894 G A DSG2 Missense_Mutation p.G611E 0.33 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 18 30926242 30926242 C T CCDC178 Missense_Mutation p.M197I 0.29 deleterious(0.05) benign(0.003) TCGA-DX-A8BP-01 18 32409174 32409174 T C DTNA Intron 0.25 TCGA-DX-A8BP-01 18 32864828 32864828 G A ZSCAN30 Intron 0.24 TCGA-DX-A8BP-01 18 32887828 32887828 G A ZNF271 RNA 0.24 TCGA-DX-A8BP-01 18 40853563 40853563 G A SYT4 Silent p.I277I 0.27 TCGA-DX-A8BP-01 18 43843667 43843667 G A C18orf25 3'UTR 0.19 TCGA-DX-A8BP-01 18 47015764 47015764 G A RPL17-C18orf32 Missense_Mutation p.P158S 0.18 deleterious(0.04) possibly_damaging(0.779) TCGA-DX-A8BP-01 18 50683792 50683792 G A DCC Missense_Mutation p.R443Q 0.19 deleterious(0) probably_damaging(0.95) TCGA-DX-A8BP-01 18 55328440 55328440 G A ATP8B1 Silent p.I891I 0.23 TCGA-DX-A8BP-01 18 56532720 56532720 C T ZNF532 5'UTR 0.21 TCGA-DX-A8BP-01 18 60226005 60226005 T G ZCCHC2 Splice_Site p.X498_splice 0.29 TCGA-DX-A8BP-01 18 63477063 63477063 C T CDH7 Missense_Mutation p.R112C 0.39 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 18 64239481 64239481 G A CDH19 5'UTR 0.27 TCGA-DX-A8BP-01 18 70204671 70204671 G A CBLN2 3'UTR 0.33 TCGA-DX-A8BP-01 18 8718544 8718544 C T SOGA2 Silent p.I32I 0.23 TCGA-DX-A8BP-01 19 10083624 10083624 G A COL5A3 Missense_Mutation p.P1249S 0.19 unknown(0) TCGA-DX-A8BP-01 19 10083625 10083625 G A COL5A3 Silent p.P1248P 0.18 TCGA-DX-A8BP-01 19 1014286 1014286 G A TMEM259 Missense_Mutation p.P138S 0.20 tolerated(0.2) benign(0.034) TCGA-DX-A8BP-01 19 10394296 10394296 G A ICAM1 Silent p.L157L 0.12 TCGA-DX-A8BP-01 19 10572584 10572584 C T PDE4A Missense_Mutation p.T551I 0.26 deleterious(0) possibly_damaging(0.71) TCGA-DX-A8BP-01 19 10753629 10753629 G A SLC44A2 Intron 0.31 TCGA-DX-A8BP-01 19 11435528 11435528 G A RAB3D 3'UTR 0.25 TCGA-DX-A8BP-01 19 11687292 11687292 G A ACP5 Silent p.F167F 0.28 TCGA-DX-A8BP-01 19 12129029 12129029 G A ZNF433 Missense_Mutation p.L31F 0.29 deleterious(0) probably_damaging(0.997) TCGA-DX-A8BP-01 19 13247128 13247128 C T NACC1 Silent p.L343L 0.15 TCGA-DX-A8BP-01 19 13888893 13888893 A C C19orf53 Missense_Mutation p.I61L 0.30 tolerated(0.06) possibly_damaging(0.527) TCGA-DX-A8BP-01 19 14070017 14070017 C T DCAF15 Silent p.P315P 0.24 TCGA-DX-A8BP-01 19 1482406 1482406 G A PCSK4 Missense_Mutation p.P589S 0.08 tolerated(0.23) benign(0.009) TCGA-DX-A8BP-01 19 1533980 1533980 C T PLK5 Silent p.L255L 0.10 TCGA-DX-A8BP-01 19 15739173 15739173 C T CYP4F8 RNA 0.35 TCGA-DX-A8BP-01 19 16222762 16222762 G A RAB8A Silent p.S17S 0.20 TCGA-DX-A8BP-01 19 16222763 16222763 G A RAB8A Missense_Mutation p.G18R 0.20 deleterious(0) probably_damaging(0.99) TCGA-DX-A8BP-01 19 17306023 17306023 C T MYO9B Missense_Mutation p.P1263S 0.28 tolerated(0.69) benign(0.001) TCGA-DX-A8BP-01 19 17306024 17306024 C T MYO9B Missense_Mutation p.P1263L 0.28 tolerated(0.81) benign(0.001) TCGA-DX-A8BP-01 19 17362811 17362811 G A USHBP1 Missense_Mutation p.P570S 0.26 tolerated(0.13) benign(0.006) TCGA-DX-A8BP-01 19 17362812 17362812 G A USHBP1 Silent p.V569V 0.26 TCGA-DX-A8BP-01 19 17937534 17937534 G A JAK3 3'UTR 0.15 TCGA-DX-A8BP-01 19 17950351 17950351 T A JAK3 Missense_Mutation p.D459V 0.21 tolerated(0.24) benign(0.045) TCGA-DX-A8BP-01 19 18978001 18978001 C T UPF1 3'UTR 0.13 TCGA-DX-A8BP-01 19 22256325 22256325 C T ZNF257 Missense_Mutation p.P62L 0.30 deleterious(0.01) possibly_damaging(0.545) TCGA-DX-A8BP-01 19 22362861 22362861 C T ZNF676 Missense_Mutation p.R553K 0.33 tolerated(0.46) benign(0.002) TCGA-DX-A8BP-01 19 2850662 2850662 C T ZNF555 Silent p.D27D 0.22 TCGA-DX-A8BP-01 19 33095252 33095252 C T ANKRD27 Missense_Mutation p.V858M 0.09 deleterious(0) possibly_damaging(0.867) TCGA-DX-A8BP-01 19 33353370 33353370 G A SLC7A9 Nonsense_Mutation p.Q201* 0.22 TCGA-DX-A8BP-01 19 33791952 33791952 C T CEBPA 3'UTR 0.12 TCGA-DX-A8BP-01 19 35251226 35251226 A C ZNF599 Missense_Mutation p.D160E 0.22 tolerated(1) benign(0.005) TCGA-DX-A8BP-01 19 3526982 3526982 C T FZR1 Missense_Mutation p.S131F 0.26 deleterious(0.01) benign(0.211) TCGA-DX-A8BP-01 19 35715857 35715857 C T FAM187B Silent p.A327A 0.26 TCGA-DX-A8BP-01 19 36236335 36236335 C T PSENEN 5'UTR 0.25 TCGA-DX-A8BP-01 19 3624118 3624118 T A CACTIN Silent p.R70R 0.32 TCGA-DX-A8BP-01 19 37047081 37047081 G A ZNF529 Silent p.V11V 0.36 TCGA-DX-A8BP-01 19 38380125 38380125 T G WDR87 Missense_Mutation p.M1357L 0.29 benign(0.003) TCGA-DX-A8BP-01 19 38383645 38383645 G A WDR87 Missense_Mutation p.L861F 0.35 benign(0.433) TCGA-DX-A8BP-01 19 38383646 38383646 G A WDR87 Silent p.V860V 0.34 TCGA-DX-A8BP-01 19 38682899 38682899 G A SIPA1L3 Silent p.K1515K 0.28 TCGA-DX-A8BP-01 19 39104934 39104934 T G MAP4K1 Splice_Site p.X124_splice 0.20 TCGA-DX-A8BP-01 19 39669325 39669325 C T PAK4 3'UTR 0.20 TCGA-DX-A8BP-01 19 3985459 3985459 G A EEF2 5'UTR 0.31 TCGA-DX-A8BP-01 19 39991283 39991283 G A DLL3 Nonsense_Mutation p.W127* 0.15 TCGA-DX-A8BP-01 19 4046321 4046321 G A ZBTB7A 3'UTR 0.13 TCGA-DX-A8BP-01 19 41281442 41281442 T C MIA 5'UTR 0.19 TCGA-DX-A8BP-01 19 41601887 41601887 G A CYP2A13 3'UTR 0.26 TCGA-DX-A8BP-01 19 41601888 41601888 G A CYP2A13 3'UTR 0.28 TCGA-DX-A8BP-01 19 42804233 42804233 G A PAFAH1B3 Silent p.V99V 0.22 TCGA-DX-A8BP-01 19 43679570 43679570 C T PSG5 Missense_Mutation p.G254E 0.24 deleterious(0.03) probably_damaging(1) TCGA-DX-A8BP-01 19 4442325 4442325 C T CHAF1A Silent p.V919V 0.18 TCGA-DX-A8BP-01 19 44470773 44470775 AGG - ZNF221 In_Frame_Del p.K373_G374delinsN 0.19 TCGA-DX-A8BP-01 19 44536292 44536292 T C ZNF222 Silent p.C195C 0.23 TCGA-DX-A8BP-01 19 45162066 45162066 C T PVR Silent p.L350L 0.15 TCGA-DX-A8BP-01 19 45491350 45491350 G A CLPTM1 Missense_Mutation p.E351K 0.38 deleterious(0) probably_damaging(0.995) TCGA-DX-A8BP-01 19 46095259 46095259 G A GPR4 5'UTR 0.24 TCGA-DX-A8BP-01 19 46095260 46095260 G A GPR4 5'UTR 0.22 TCGA-DX-A8BP-01 19 4652151 4652151 C T TNFAIP8L1 Silent p.F90F 0.25 TCGA-DX-A8BP-01 19 47424921 47424921 C T ARHGAP35 Nonsense_Mutation p.R997* 0.38 TCGA-DX-A8BP-01 19 47492888 47492888 C T ARHGAP35 Missense_Mutation p.P1331L 0.35 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 19 47996381 47996381 G A NAPA Silent p.S157S 0.24 TCGA-DX-A8BP-01 19 48018105 48018105 G A NAPA Silent p.L31L 0.25 TCGA-DX-A8BP-01 19 48204653 48204653 C T GLTSCR1 Missense_Mutation p.P1222S 0.23 benign(0.332) TCGA-DX-A8BP-01 19 48305231 48305231 T C TPRX1 Missense_Mutation p.D346G 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-DX-A8BP-01 19 48733921 48733921 T C CARD8 Missense_Mutation p.H270R 0.26 deleterious(0.02) possibly_damaging(0.506) TCGA-DX-A8BP-01 19 48919340 48919340 C T GRIN2D Missense_Mutation p.P555S 0.12 deleterious(0) probably_damaging(0.961) TCGA-DX-A8BP-01 19 49527229 49527229 C T CGB 5'UTR 0.21 TCGA-DX-A8BP-01 19 49842676 49842676 C T CD37 Intron 0.24 TCGA-DX-A8BP-01 19 49990694 49990694 G A RPL13A 5'Flank 0.19 TCGA-DX-A8BP-01 19 50031746 50031746 C T RCN3 Missense_Mutation p.S6L 0.33 tolerated(0.61) benign(0.014) TCGA-DX-A8BP-01 19 50143295 50143295 G A RRAS Missense_Mutation p.P21S 0.24 tolerated(0.21) possibly_damaging(0.857) TCGA-DX-A8BP-01 19 50169131 50169131 C T BCL2L12 Silent p.F17F 0.26 TCGA-DX-A8BP-01 19 50169132 50169132 C T BCL2L12 Missense_Mutation p.R18W 0.26 tolerated_low_confidence(0.07) benign(0.003) TCGA-DX-A8BP-01 19 50266372 50266372 C T TSKS Missense_Mutation p.G45R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-DX-A8BP-01 19 50512498 50512498 G A VRK3 Missense_Mutation p.S95F 0.15 deleterious(0.02) benign(0.231) TCGA-DX-A8BP-01 19 50795622 50795622 G A MYH14 Silent p.E1744E 0.21 TCGA-DX-A8BP-01 19 51960875 51960875 C T SIGLEC8 Nonsense_Mutation p.W191* 0.24 TCGA-DX-A8BP-01 19 52149119 52149119 C T SIGLEC14 Missense_Mutation p.D206N 0.18 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 19 52217193 52217193 G A HAS1 Silent p.S408S 0.12 TCGA-DX-A8BP-01 19 52217194 52217194 G A HAS1 Missense_Mutation p.S408F 0.12 deleterious(0.01) possibly_damaging(0.862) TCGA-DX-A8BP-01 19 52496272 52496272 C T ZNF615 Missense_Mutation p.G697E 0.11 tolerated(0.07) benign(0.114) TCGA-DX-A8BP-01 19 52919608 52919608 C T ZNF528 Silent p.V501V 0.22 TCGA-DX-A8BP-01 19 54313970 54313970 C T NLRP12 Missense_Mutation p.E315K 0.30 tolerated(0.67) benign(0.159) TCGA-DX-A8BP-01 19 54515508 54515508 G A CACNG6 3'UTR 0.15 TCGA-DX-A8BP-01 19 54687475 54687475 C T MBOAT7 Missense_Mutation p.G141E 0.20 deleterious(0.01) benign(0.245) TCGA-DX-A8BP-01 19 55107114 55107114 G A LILRA1 Silent p.K224K 0.22 TCGA-DX-A8BP-01 19 55281320 55281320 C T KIR2DL1 Silent p.V6V 0.24 TCGA-DX-A8BP-01 19 55349041 55349041 A C KIR2DS4 Missense_Mutation p.R27S 0.23 tolerated_low_confidence(0.08) benign(0.262) TCGA-DX-A8BP-01 19 55420788 55420788 G A NCR1 Silent p.V180V 0.32 TCGA-DX-A8BP-01 19 56180472 56180472 G A U2AF2 Missense_Mutation p.M323I 0.26 deleterious(0) benign(0.081) TCGA-DX-A8BP-01 19 57086038 57086038 C T ZNF470 Silent p.S73S 0.19 TCGA-DX-A8BP-01 19 57746716 57746716 C T AURKC Silent p.I287I 0.15 TCGA-DX-A8BP-01 19 58441844 58441844 G A ZNF418 Missense_Mutation p.L29F 0.16 deleterious(0) probably_damaging(0.961) TCGA-DX-A8BP-01 19 58499577 58499577 G A ZNF606 Missense_Mutation p.P133L 0.27 tolerated(0.24) benign(0.17) TCGA-DX-A8BP-01 19 5892512 5892512 G A NDUFA11 3'UTR 0.24 TCGA-DX-A8BP-01 19 6307229 6307229 C T ACER1 Nonsense_Mutation p.W187* 0.19 TCGA-DX-A8BP-01 19 6495627 6495627 C G TUBB4A Missense_Mutation p.D295H 0.25 deleterious_low_confidence(0.01) probably_damaging(0.982) TCGA-DX-A8BP-01 19 6926613 6926613 G A EMR1 Splice_Site p.X741_splice 0.24 TCGA-DX-A8BP-01 19 7763242 7763242 C T FCER2 Missense_Mutation p.V64I 0.29 tolerated(0.06) possibly_damaging(0.509) TCGA-DX-A8BP-01 19 8188359 8188359 C T FBN3 Missense_Mutation p.R1024Q 0.34 deleterious(0.05) possibly_damaging(0.906) TCGA-DX-A8BP-01 19 8587306 8587306 C G MYO1F Missense_Mutation p.E1059Q 0.21 deleterious(0) probably_damaging(0.965) TCGA-DX-A8BP-01 19 9056800 9056800 G A MUC16 Missense_Mutation p.P10216S 0.12 benign(0.003) TCGA-DX-A8BP-01 19 9066683 9066683 G T MUC16 Silent p.S6921S 0.23 TCGA-DX-A8BP-01 19 9076627 9076627 G A MUC16 Missense_Mutation p.P3607S 0.19 unknown(0) TCGA-DX-A8BP-01 19 9868843 9868843 G T ZNF846 Missense_Mutation p.H304N 0.25 deleterious(0) probably_damaging(0.99) TCGA-DX-A8BP-01 1 102312562 102312562 G A OLFM3 Intron 0.48 TCGA-DX-A8BP-01 1 103444272 103444272 C T COL11A1 Missense_Mutation p.G916S 0.51 unknown(0) TCGA-DX-A8BP-01 1 109817314 109817314 C T CELSR2 3'UTR 0.31 TCGA-DX-A8BP-01 1 11008839 11008839 G A C1orf127 Silent p.S451S 0.37 TCGA-DX-A8BP-01 1 11008840 11008840 G A C1orf127 Missense_Mutation p.S451F 0.37 deleterious(0) probably_damaging(0.977) TCGA-DX-A8BP-01 1 110255276 110255276 G A GSTM5 Missense_Mutation p.D25N 0.27 tolerated(0.08) benign(0.017) TCGA-DX-A8BP-01 1 111984657 111984657 G A WDR77 Missense_Mutation p.L287F 0.38 tolerated(0.14) benign(0.009) TCGA-DX-A8BP-01 1 113655160 113655160 A T LRIG2 Nonsense_Mutation p.R620* 0.12 TCGA-DX-A8BP-01 1 117532884 117532884 T A PTGFRN 3'UTR 0.17 TCGA-DX-A8BP-01 1 118066912 118066912 T C MAN1A2 3'UTR 0.50 TCGA-DX-A8BP-01 1 12888398 12888398 G A PRAMEF11 Silent p.L42L 0.24 TCGA-DX-A8BP-01 1 12954686 12954686 C T PRAMEF10 Silent p.L199L 0.28 TCGA-DX-A8BP-01 1 144864229 144864229 C T PDE4DIP Missense_Mutation p.E1956K 0.18 tolerated(0.07) benign(0.393) TCGA-DX-A8BP-01 1 144864236 144864236 C T PDE4DIP Silent p.Q1953Q 0.16 TCGA-DX-A8BP-01 1 145474292 145474292 G A ANKRD34A Missense_Mutation p.E322K 0.23 deleterious(0.03) possibly_damaging(0.506) TCGA-DX-A8BP-01 1 149939398 149939398 G A OTUD7B Missense_Mutation p.S108F 0.36 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BP-01 1 150923309 150923309 C T SETDB1 Silent p.F652F 0.30 TCGA-DX-A8BP-01 1 152057940 152057940 C T TCHHL1 Missense_Mutation p.E740K 0.17 tolerated(0.14) benign(0.007) TCGA-DX-A8BP-01 1 152193480 152193480 C A HRNR Missense_Mutation p.G209C 0.19 unknown(0) TCGA-DX-A8BP-01 1 152278855 152278855 C T FLG Missense_Mutation p.S2836N 0.09 possibly_damaging(0.483) TCGA-DX-A8BP-01 1 153177421 153177421 C T LELP1 Missense_Mutation p.P80S 0.21 tolerated_low_confidence(0.43) unknown(0) TCGA-DX-A8BP-01 1 153516190 153516190 G A S100A4 3'UTR 0.15 TCGA-DX-A8BP-01 1 153580151 153580151 C T S100A16 Silent p.K57K 0.29 TCGA-DX-A8BP-01 1 153912188 153912188 C T DENND4B Missense_Mutation p.V566I 0.17 tolerated(1) benign(0.402) TCGA-DX-A8BP-01 1 153914693 153914693 G A DENND4B Silent p.T260T 0.34 TCGA-DX-A8BP-01 1 153914694 153914694 G A DENND4B Missense_Mutation p.T260I 0.34 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BP-01 1 154173059 154173059 C T C1orf189 Missense_Mutation p.R27Q 0.19 tolerated(1) benign(0.007) TCGA-DX-A8BP-01 1 155429630 155429630 G A ASH1L Missense_Mutation p.P1682S 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.864) TCGA-DX-A8BP-01 1 156263235 156263235 A T C1orf85 Missense_Mutation p.Y311N 0.39 tolerated(0.25) benign(0.076) TCGA-DX-A8BP-01 1 15654874 15654874 G A FHAD1 Silent p.E158E 0.35 TCGA-DX-A8BP-01 1 157545226 157545226 C T FCRL4 3'UTR 0.32 TCGA-DX-A8BP-01 1 157739747 157739747 C T FCRL2 Nonsense_Mutation p.W168* 0.28 TCGA-DX-A8BP-01 1 158064706 158064706 C T KIRREL Silent p.F690F 0.33 TCGA-DX-A8BP-01 1 158297849 158297849 T A CD1B 3'UTR 0.19 TCGA-DX-A8BP-01 1 158299203 158299203 C T CD1B Silent p.V281V 0.27 TCGA-DX-A8BP-01 1 159854353 159854353 C T CCDC19 Missense_Mutation p.G257E 0.31 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BP-01 1 160113121 160113121 G A ATP1A2 3'UTR 0.30 TCGA-DX-A8BP-01 1 160589632 160589632 C T SLAMF1 Silent p.T266T 0.26 TCGA-DX-A8BP-01 1 161199367 161199367 G A TOMM40L 3'UTR 0.30 TCGA-DX-A8BP-01 1 165649754 165649754 G A ALDH9A1 Silent p.S253S 0.29 TCGA-DX-A8BP-01 1 169509743 169509743 C T F5 Missense_Mutation p.E1529K 0.13 tolerated(0.32) benign(0.007) TCGA-DX-A8BP-01 1 171174662 171174662 C T FMO2 Missense_Mutation p.P358S 0.24 deleterious(0) probably_damaging(0.984) TCGA-DX-A8BP-01 1 175063125 175063125 G A TNN Splice_Site p.X442_splice 0.16 TCGA-DX-A8BP-01 1 17607195 17607195 G T PADI3 Silent p.L555L 0.41 TCGA-DX-A8BP-01 1 177936955 177936955 C T SEC16B Silent p.G54G 0.30 TCGA-DX-A8BP-01 1 183102597 183102597 A G LAMC1 Missense_Mutation p.H1254R 0.27 tolerated(0.6) benign(0.101) TCGA-DX-A8BP-01 1 183519982 183519982 C T SMG7 Missense_Mutation p.S1031F 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DX-A8BP-01 1 183519983 183519983 C T SMG7 Silent p.S1031S 0.32 TCGA-DX-A8BP-01 1 185143987 185143987 C T SWT1 Silent p.I236I 0.15 TCGA-DX-A8BP-01 1 196759072 196759072 A G CFHR3 Intron 0.23 TCGA-DX-A8BP-01 1 19984847 19984847 C T NBL1 3'Flank 0.55 TCGA-DX-A8BP-01 1 200943942 200943942 A C KIF21B Missense_Mutation p.W1572G 0.32 deleterious(0) possibly_damaging(0.62) TCGA-DX-A8BP-01 1 201869728 201869728 C A LMOD1 Missense_Mutation p.R138I 0.44 benign(0.265) TCGA-DX-A8BP-01 1 20395415 20395415 C T PLA2G5 5'Flank 0.35 TCGA-DX-A8BP-01 1 204190511 204190511 C T PLEKHA6 3'UTR 0.21 TCGA-DX-A8BP-01 1 204985862 204985862 C T NFASC 3'UTR 0.22 TCGA-DX-A8BP-01 1 206634535 206634535 C T SRGAP2 Silent p.L910L 0.20 TCGA-DX-A8BP-01 1 207791559 207791559 G A CR1 Missense_Mutation p.G2345R 0.28 deleterious(0.05) possibly_damaging(0.587) TCGA-DX-A8BP-01 1 214828746 214828746 G A CENPF Missense_Mutation p.G2829S 0.30 possibly_damaging(0.558) TCGA-DX-A8BP-01 1 220191843 220191843 G A EPRS Missense_Mutation p.S481L 0.15 deleterious(0) probably_damaging(0.982) TCGA-DX-A8BP-01 1 22310715 22310715 C T CELA3B Missense_Mutation p.A178V 0.46 deleterious(0.01) probably_damaging(0.961) TCGA-DX-A8BP-01 1 223285782 223285782 G A TLR5 Missense_Mutation p.L198F 0.22 tolerated(1) benign(0.004) TCGA-DX-A8BP-01 1 223987656 223987656 G A TP53BP2 Missense_Mutation p.S477F 0.20 tolerated(0.22) benign(0.309) TCGA-DX-A8BP-01 1 227071405 227071405 G A PSEN2 Splice_Site p.X48_splice 0.31 TCGA-DX-A8BP-01 1 228286670 228286670 C T ARF1 3'UTR 0.17 TCGA-DX-A8BP-01 1 22915715 22915715 C T EPHA8 Intron 0.36 TCGA-DX-A8BP-01 1 237863617 237863617 G A RYR2 Missense_Mutation p.E3073K 0.19 possibly_damaging(0.463) TCGA-DX-A8BP-01 1 237948054 237948054 G A RYR2 Missense_Mutation p.E4348K 0.30 benign(0.067) TCGA-DX-A8BP-01 1 240964009 240964009 G A RGS7 Intron 0.24 TCGA-DX-A8BP-01 1 244572145 244572145 C T ADSS 3'UTR 0.23 TCGA-DX-A8BP-01 1 245016493 245016493 G A HNRNPU 3'Flank 0.29 TCGA-DX-A8BP-01 1 248004963 248004963 G A OR11L1 Missense_Mutation p.P79L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 1 248202181 248202181 C T OR2L2 Silent p.I204I 0.29 TCGA-DX-A8BP-01 1 248224295 248224295 G A OR2L3 Silent p.S104S 0.29 TCGA-DX-A8BP-01 1 26644702 26644702 G A UBXN11 5'UTR 0.20 TCGA-DX-A8BP-01 1 26694992 26694992 G A ZNF683 Missense_Mutation p.S24F 0.21 deleterious(0) benign(0.099) TCGA-DX-A8BP-01 1 27099425 27099425 T G ARID1A Missense_Mutation p.M1221R 0.36 unknown(0) TCGA-DX-A8BP-01 1 32084817 32084817 G A HCRTR1 Silent p.G8G 0.10 TCGA-DX-A8BP-01 1 32706031 32706031 A T MTMR9LP RNA 0.15 TCGA-DX-A8BP-01 1 33066171 33066171 C G ZBTB8A 3'UTR 0.36 TCGA-DX-A8BP-01 1 33478745 33478745 C T AK2 3'UTR 0.28 TCGA-DX-A8BP-01 1 35370210 35370210 C T DLGAP3 Missense_Mutation p.G259S 0.28 tolerated(0.16) probably_damaging(0.997) TCGA-DX-A8BP-01 1 35857822 35857822 C T ZMYM4 Missense_Mutation p.S866F 0.12 deleterious(0.01) benign(0.374) TCGA-DX-A8BP-01 1 35886727 35886727 C T ZMYM4 3'UTR 0.22 TCGA-DX-A8BP-01 1 36043033 36043033 C T TFAP2E Intron 0.18 TCGA-DX-A8BP-01 1 36385783 36385783 T C AGO1 3'UTR 0.46 TCGA-DX-A8BP-01 1 38510678 38510678 G A POU3F1 3'UTR 0.21 TCGA-DX-A8BP-01 1 39792995 39792995 G A MACF1 Silent p.Q1533Q 0.27 TCGA-DX-A8BP-01 1 39905066 39905066 T A MACF1 Missense_Mutation p.M4055K 0.39 probably_damaging(0.974) TCGA-DX-A8BP-01 1 39908410 39908410 C T MACF1 Missense_Mutation p.H4318Y 0.26 probably_damaging(0.999) TCGA-DX-A8BP-01 1 39988693 39988693 C T BMP8A Silent p.A321A 0.12 TCGA-DX-A8BP-01 1 40366681 40366681 G A MYCL Silent p.P172P 0.41 TCGA-DX-A8BP-01 1 40928208 40928208 C T ZFP69B Silent p.S184S 0.25 TCGA-DX-A8BP-01 1 43124105 43124105 C T PPIH 5'UTR 0.30 TCGA-DX-A8BP-01 1 43124106 43124106 C T PPIH 5'UTR 0.30 TCGA-DX-A8BP-01 1 43855558 43855558 C T SZT2 5'Flank 0.30 TCGA-DX-A8BP-01 1 43870167 43870167 G A SZT2 Silent p.E148E 0.34 TCGA-DX-A8BP-01 1 44432656 44432656 G A IPO13 Missense_Mutation p.E860K 0.26 tolerated(0.41) benign(0.001) TCGA-DX-A8BP-01 1 45363097 45363097 G A EIF2B3 Missense_Mutation p.H196Y 0.16 deleterious(0.04) benign(0.004) TCGA-DX-A8BP-01 1 47534386 47534386 C T CYP4Z1 Silent p.F90F 0.19 TCGA-DX-A8BP-01 1 51584450 51584450 C T C1orf185 Missense_Mutation p.H79Y 0.21 deleterious(0) probably_damaging(0.961) TCGA-DX-A8BP-01 1 55251149 55251149 G A TTC22 Intron 0.24 TCGA-DX-A8BP-01 1 56961233 56961233 C T PPAP2B 3'UTR 0.16 TCGA-DX-A8BP-01 1 60392370 60392370 G A CYP2J2 Missense_Mutation p.H17Y 0.14 tolerated(0.17) possibly_damaging(0.635) TCGA-DX-A8BP-01 1 6204083 6204083 C T CHD5 Splice_Site p.X645_splice 0.21 TCGA-DX-A8BP-01 1 6204084 6204084 C T CHD5 Missense_Mutation p.R645K 0.22 tolerated(0.11) benign(0.279) TCGA-DX-A8BP-01 1 6214936 6214936 G A CHD5 Missense_Mutation p.P177S 0.42 deleterious(0) probably_damaging(0.981) TCGA-DX-A8BP-01 1 62626614 62626614 G A INADL 3'UTR 0.51 TCGA-DX-A8BP-01 1 6520710 6520710 C T ESPN 3'UTR 0.24 TCGA-DX-A8BP-01 1 67519562 67519562 G A SLC35D1 Silent p.A45A 0.60 TCGA-DX-A8BP-01 1 67519563 67519563 G A SLC35D1 Missense_Mutation p.A45V 0.60 deleterious(0.04) benign(0.027) TCGA-DX-A8BP-01 1 70385538 70385538 G A LRRC7 Intron 0.56 TCGA-DX-A8BP-01 1 72748276 72748276 G A NEGR1 5'UTR 0.50 TCGA-DX-A8BP-01 1 75037302 75037302 C G C1orf173 Missense_Mutation p.E1364D 0.43 tolerated(0.12) benign(0.006) TCGA-DX-A8BP-01 1 82409449 82409449 C T LPHN2 Silent p.A398A 0.35 TCGA-DX-A8BP-01 1 89430581 89430581 G A CCBL2 Silent p.I128I 0.57 TCGA-DX-A8BP-01 1 90460691 90460691 C T ZNF326 5'UTR 0.38 TCGA-DX-A8BP-01 1 90460692 90460692 C T ZNF326 5'UTR 0.38 TCGA-DX-A8BP-01 1 92646319 92646319 G A KIAA1107 Missense_Mutation p.E589K 0.45 tolerated(0.06) benign(0.126) TCGA-DX-A8BP-01 1 9323746 9323746 C T H6PD Silent p.L398L 0.21 TCGA-DX-A8BP-01 1 9428757 9428757 C T SPSB1 3'UTR 0.50 TCGA-DX-A8BP-01 1 98164976 98164976 G A DPYD Missense_Mutation p.S204F 0.44 deleterious(0) probably_damaging(0.996) TCGA-DX-A8BP-01 1 990457 990457 G A AGRN 3'UTR 0.52 TCGA-DX-A8BP-01 20 10273570 10273570 C T SNAP25 Intron 0.18 TCGA-DX-A8BP-01 20 10627605 10627605 C T JAG1 Missense_Mutation p.G623R 0.29 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 20 10627606 10627606 C T JAG1 Silent p.T622T 0.30 TCGA-DX-A8BP-01 20 1115795 1115795 C T PSMF1 Missense_Mutation p.R133C 0.20 deleterious(0.01) possibly_damaging(0.596) TCGA-DX-A8BP-01 20 13830077 13830077 G A SEL1L2 3'UTR 0.30 TCGA-DX-A8BP-01 20 13971213 13971213 C A SEL1L2 5'UTR 0.13 TCGA-DX-A8BP-01 20 2293563 2293563 G A TGM3 Missense_Mutation p.S187N 0.27 tolerated(1) benign(0) TCGA-DX-A8BP-01 20 25597014 25597014 G A NANP Silent p.F98F 0.33 TCGA-DX-A8BP-01 20 2819117 2819117 G A PCED1A Missense_Mutation p.P201L 0.21 tolerated(0.73) benign(0.008) TCGA-DX-A8BP-01 20 32247711 32247711 G A NECAB3 Missense_Mutation p.S208F 0.40 tolerated(0.1) possibly_damaging(0.905) TCGA-DX-A8BP-01 20 32255243 32255243 C T ACTL10 5'UTR 0.47 TCGA-DX-A8BP-01 20 32345021 32345021 G A ZNF341 Missense_Mutation p.G270E 0.16 tolerated(0.26) benign(0.074) TCGA-DX-A8BP-01 20 33711758 33711758 G A EDEM2 Missense_Mutation p.P350L 0.16 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 20 35090920 35090920 C T DLGAP4 Intron 0.10 TCGA-DX-A8BP-01 20 36032544 36032544 C T SRC 3'UTR 0.07 TCGA-DX-A8BP-01 20 36770476 36770476 C T TGM2 Missense_Mutation p.E329K 0.47 deleterious(0.01) possibly_damaging(0.712) TCGA-DX-A8BP-01 20 3782642 3782642 C T CDC25B Silent p.P331P 0.24 TCGA-DX-A8BP-01 20 43595123 43595123 G A STK4 5'UTR 0.58 TCGA-DX-A8BP-01 20 45131081 45131081 C T ZNF334 Silent p.R299R 0.11 TCGA-DX-A8BP-01 20 47241054 47241054 G A PREX1 3'UTR 0.37 TCGA-DX-A8BP-01 20 47241055 47241055 G A PREX1 3'UTR 0.38 TCGA-DX-A8BP-01 20 48600506 48600506 C T SNAI1 Silent p.S76S 0.50 TCGA-DX-A8BP-01 20 48600634 48600634 C T SNAI1 Missense_Mutation p.S119F 0.44 tolerated(0.13) possibly_damaging(0.876) TCGA-DX-A8BP-01 20 48600635 48600635 T C SNAI1 Silent p.S119S 0.43 TCGA-DX-A8BP-01 20 60990633 60990633 C T RBBP8NL Splice_Site p.X209_splice 0.36 TCGA-DX-A8BP-01 20 62730195 62730195 C T OPRL1 3'UTR 0.24 TCGA-DX-A8BP-01 20 62730196 62730196 C T OPRL1 3'UTR 0.24 TCGA-DX-A8BP-01 20 9288516 9288516 G A PLCB4 Missense_Mutation p.E19K 0.35 tolerated(0.77) benign(0.068) TCGA-DX-A8BP-01 21 15680912 15680912 G A ABCC13 RNA 0.33 TCGA-DX-A8BP-01 21 16337333 16337333 A T NRIP1 Missense_Mutation p.L1061M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BP-01 21 30433670 30433670 T A CCT8 Silent p.A451A 0.22 TCGA-DX-A8BP-01 21 30521520 30521520 C T MAP3K7CL Silent p.P127P 0.41 TCGA-DX-A8BP-01 21 32185196 32185196 C T KRTAP8-1 3'UTR 0.24 TCGA-DX-A8BP-01 21 34925770 34925770 T A SON Silent p.S1411S 0.12 TCGA-DX-A8BP-01 21 35473619 35473619 C T SLC5A3 3'UTR 0.19 TCGA-DX-A8BP-01 21 38495291 38495291 G A TTC3 Missense_Mutation p.A358T 0.18 tolerated(0.48) benign(0.004) TCGA-DX-A8BP-01 21 40565595 40565595 T C BRWD1 Intron 0.23 TCGA-DX-A8BP-01 21 42615337 42615337 G C BACE2 Missense_Mutation p.G261A 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BP-01 21 44174113 44174113 C T PDE9A Missense_Mutation p.P250L 0.14 deleterious(0.05) benign(0.026) TCGA-DX-A8BP-01 22 17976556 17976556 G A CECR2 Missense_Mutation p.E74K 0.25 deleterious(0.01) possibly_damaging(0.558) TCGA-DX-A8BP-01 22 17979687 17979687 C T CECR2 Silent p.V149V 0.11 TCGA-DX-A8BP-01 22 18846102 18846102 G A BCRP7 RNA 0.08 TCGA-DX-A8BP-01 22 21084217 21084217 G A PI4KA Silent p.P1457P 0.18 TCGA-DX-A8BP-01 22 21084218 21084218 G A PI4KA Missense_Mutation p.P1457L 0.18 deleterious(0) possibly_damaging(0.714) TCGA-DX-A8BP-01 22 21133933 21133933 G A SERPIND1 Silent p.G111G 0.26 TCGA-DX-A8BP-01 22 21990944 21990944 C T CCDC116 Missense_Mutation p.S476F 0.19 tolerated(1) benign(0.001) TCGA-DX-A8BP-01 22 24621298 24621298 G A GGT5 Missense_Mutation p.P474L 0.19 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 22 28292588 28292588 G A PITPNB Silent p.F108F 0.12 TCGA-DX-A8BP-01 22 29184997 29184997 C T CCDC117 3'UTR 0.35 TCGA-DX-A8BP-01 22 29446776 29446776 C T ZNRF3 Silent p.G869G 0.27 TCGA-DX-A8BP-01 22 30032850 30032850 C T NF2 Silent p.L75L 0.34 TCGA-DX-A8BP-01 22 30682027 30682027 G A GATSL3 Silent p.I268I 0.18 TCGA-DX-A8BP-01 22 30988174 30988174 G A PES1 5'Flank 0.12 TCGA-DX-A8BP-01 22 30988175 30988175 G A PES1 5'Flank 0.10 TCGA-DX-A8BP-01 22 35799446 35799446 C T MCM5 Missense_Mutation p.R112W 0.27 tolerated(0.17) possibly_damaging(0.696) TCGA-DX-A8BP-01 22 37499331 37499331 G A TMPRSS6 Missense_Mutation p.R52C 0.20 tolerated(0.19) benign(0.003) TCGA-DX-A8BP-01 22 38266316 38266316 C T EIF3L Missense_Mutation p.S238F 0.44 deleterious(0) probably_damaging(0.977) TCGA-DX-A8BP-01 22 39884372 39884372 C A MGAT3 Missense_Mutation p.F340L 0.24 tolerated(0.08) benign(0.029) TCGA-DX-A8BP-01 22 43465683 43465683 G A TTLL1 Missense_Mutation p.P94L 0.20 tolerated(0.07) benign(0.012) TCGA-DX-A8BP-01 22 44395417 44395417 G A PARVB Silent p.R25R 0.28 TCGA-DX-A8BP-01 22 44586469 44586469 C T PARVG Missense_Mutation p.L143F 0.32 deleterious(0) probably_damaging(0.997) TCGA-DX-A8BP-01 22 45312480 45312480 G A PHF21B Missense_Mutation p.L82F 0.24 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-DX-A8BP-01 22 45312481 45312481 G A PHF21B Silent p.S81S 0.25 TCGA-DX-A8BP-01 22 50485695 50485695 G A TTLL8 Missense_Mutation p.L135F 0.19 tolerated(1) benign(0.006) TCGA-DX-A8BP-01 22 50485696 50485696 G A TTLL8 Silent p.Y134Y 0.18 TCGA-DX-A8BP-01 22 50719043 50719043 G A PLXNB2 Silent p.F1350F 0.13 TCGA-DX-A8BP-01 22 50860782 50860782 C T PPP6R2 Silent p.F316F 0.26 TCGA-DX-A8BP-01 22 50900238 50900238 G A SBF1 Missense_Mutation p.P877L 0.35 deleterious(0.03) probably_damaging(1) TCGA-DX-A8BP-01 22 50941899 50941899 G A LMF2 Missense_Mutation p.S682F 0.36 deleterious(0.02) benign(0.112) TCGA-DX-A8BP-01 2 10192919 10192919 G A KLF11 3'UTR 0.23 TCGA-DX-A8BP-01 2 103003460 103003460 G A IL18R1 Missense_Mutation p.A317T 0.21 tolerated(0.28) benign(0.006) TCGA-DX-A8BP-01 2 103148903 103148903 G A SLC9A4 Missense_Mutation p.R718K 0.15 tolerated(0.32) benign(0.006) TCGA-DX-A8BP-01 2 105897047 105897047 C A TGFBRAP1 Nonsense_Mutation p.E419* 0.23 TCGA-DX-A8BP-01 2 1079275 1079275 G A SNTG2 Silent p.T48T 0.12 TCGA-DX-A8BP-01 2 109100731 109100731 C T GCC2 Nonsense_Mutation p.Q1193* 0.25 TCGA-DX-A8BP-01 2 116534785 116534785 G A DPP10 Missense_Mutation p.S412N 0.33 tolerated(0.08) benign(0.008) TCGA-DX-A8BP-01 2 118677966 118677966 G A CCDC93 Missense_Mutation p.R617C 0.12 deleterious(0) possibly_damaging(0.816) TCGA-DX-A8BP-01 2 120021863 120021863 A G STEAP3 3'UTR 0.38 TCGA-DX-A8BP-01 2 122488477 122488477 G A NIFK Missense_Mutation p.P186S 0.12 deleterious(0.03) possibly_damaging(0.566) TCGA-DX-A8BP-01 2 136482733 136482733 T A R3HDM1 3'UTR 0.09 TCGA-DX-A8BP-01 2 142238075 142238075 G A LRP1B Missense_Mutation p.P78L 0.17 possibly_damaging(0.908) TCGA-DX-A8BP-01 2 149243394 149243394 C T MBD5 Missense_Mutation p.P977S 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-DX-A8BP-01 2 152477456 152477456 C T NEB Missense_Mutation p.A3513T 0.29 probably_damaging(0.979) TCGA-DX-A8BP-01 2 152477457 152477457 C T NEB Silent p.K3512K 0.28 TCGA-DX-A8BP-01 2 152733001 152733001 G A CACNB4 Missense_Mutation p.P154S 0.16 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BP-01 2 153417452 153417452 C T FMNL2 Missense_Mutation p.P167S 0.35 benign(0.054) TCGA-DX-A8BP-01 2 162821569 162821569 C T SLC4A10 Silent p.A1015A 0.31 TCGA-DX-A8BP-01 2 1658278 1658278 G A PXDN Missense_Mutation p.P614S 0.22 tolerated(0.37) benign(0.04) TCGA-DX-A8BP-01 2 167133824 167133824 G A SCN9A Missense_Mutation p.S837F 0.21 deleterious(0) benign(0.439) TCGA-DX-A8BP-01 2 167760013 167760013 C T XIRP2 Silent p.G7G 0.17 TCGA-DX-A8BP-01 2 167760079 167760079 G A XIRP2 Silent p.R29R 0.26 TCGA-DX-A8BP-01 2 168107021 168107021 G A XIRP2 Missense_Mutation p.G3040E 0.20 benign(0.082) TCGA-DX-A8BP-01 2 168107423 168107423 C T XIRP2 Missense_Mutation p.P3174L 0.24 benign(0.244) TCGA-DX-A8BP-01 2 169984336 169984336 C T LRP2 3'UTR 0.18 TCGA-DX-A8BP-01 2 171702556 171702556 C T GAD1 Missense_Mutation p.L329F 0.33 deleterious(0.04) possibly_damaging(0.482) TCGA-DX-A8BP-01 2 175427220 175427220 C T WIPF1 3'UTR 0.33 TCGA-DX-A8BP-01 2 175618352 175618352 C T CHRNA1 Silent p.L244L 0.13 TCGA-DX-A8BP-01 2 177037618 177037618 G A HOXD3 3'UTR 0.47 TCGA-DX-A8BP-01 2 179418830 179418830 G A TTN Missense_Mutation p.L29670F 0.17 TCGA-DX-A8BP-01 2 179604785 179604785 C T TTN Missense_Mutation p.R4392K 0.27 TCGA-DX-A8BP-01 2 189434016 189434016 G A GULP1 Silent p.R150R 0.17 TCGA-DX-A8BP-01 2 189898067 189898067 C T COL5A2 3'UTR 0.24 TCGA-DX-A8BP-01 2 192265479 192265479 G A MYO1B Missense_Mutation p.R796Q 0.28 tolerated(0.12) probably_damaging(0.968) TCGA-DX-A8BP-01 2 196746611 196746611 G A DNAH7 Nonsense_Mutation p.R1957* 0.29 TCGA-DX-A8BP-01 2 197629403 197629403 C T GTF3C3 Missense_Mutation p.E849K 0.26 tolerated(0.31) benign(0.048) TCGA-DX-A8BP-01 2 198649780 198649780 C T BOLL Intron 0.31 TCGA-DX-A8BP-01 2 20402441 20402441 G A SDC1 3'UTR 0.27 TCGA-DX-A8BP-01 2 210517991 210517991 G A MAP2 Missense_Mutation p.D33N 0.33 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-DX-A8BP-01 2 210678560 210678560 A G UNC80 Missense_Mutation p.T399A 0.25 possibly_damaging(0.764) TCGA-DX-A8BP-01 2 210685266 210685266 C T UNC80 Missense_Mutation p.P732S 0.29 benign(0) TCGA-DX-A8BP-01 2 21238125 21238125 C T APOB Silent p.E1172E 0.12 TCGA-DX-A8BP-01 2 21246479 21246479 C T APOB Missense_Mutation p.G841E 0.24 probably_damaging(1) TCGA-DX-A8BP-01 2 216259284 216259284 C T FN1 Missense_Mutation p.E1255K 0.35 deleterious(0.03) possibly_damaging(0.591) TCGA-DX-A8BP-01 2 227954652 227954652 T C COL4A4 Missense_Mutation p.N464S 0.27 benign(0.018) TCGA-DX-A8BP-01 2 228475952 228475952 C T C2orf83 3'UTR 0.33 TCGA-DX-A8BP-01 2 228883790 228883790 C T SPHKAP Missense_Mutation p.E594K 0.22 tolerated(0.19) benign(0.005) TCGA-DX-A8BP-01 2 234106796 234106796 G A INPP5D Missense_Mutation p.G905R 0.21 tolerated(0.05) benign(0.386) TCGA-DX-A8BP-01 2 234358759 234358759 G A DGKD Missense_Mutation p.G674R 0.40 tolerated(0.56) benign(0.002) TCGA-DX-A8BP-01 2 234442285 234442285 G A USP40 Silent p.S448S 0.19 TCGA-DX-A8BP-01 2 234652241 234652241 C T UGT1A10 Intron 0.21 TCGA-DX-A8BP-01 2 238006740 238006740 C G COPS8 3'UTR 0.18 TCGA-DX-A8BP-01 2 238280873 238280873 C G COL6A3 Missense_Mutation p.D1263H 0.17 probably_damaging(0.999) TCGA-DX-A8BP-01 2 238280874 238280874 C T COL6A3 Silent p.L1262L 0.19 TCGA-DX-A8BP-01 2 239098570 239098570 C A ILKAP Silent p.G74G 0.33 TCGA-DX-A8BP-01 2 239098571 239098571 C T ILKAP Missense_Mutation p.G74E 0.32 tolerated(0.82) benign(0.001) TCGA-DX-A8BP-01 2 24051782 24051782 T A ATAD2B Missense_Mutation p.T586S 0.11 deleterious(0) probably_damaging(0.992) TCGA-DX-A8BP-01 2 241631582 241631582 G A AQP12A Missense_Mutation p.G72E 0.20 deleterious(0.04) possibly_damaging(0.739) TCGA-DX-A8BP-01 2 242716350 242716350 C T GAL3ST2 5'UTR 0.20 TCGA-DX-A8BP-01 2 24413314 24413314 G A FAM228A Silent p.Q145Q 0.39 TCGA-DX-A8BP-01 2 27730613 27730613 C T GCKR Silent p.I403I 0.21 TCGA-DX-A8BP-01 2 28761209 28761209 G A PLB1 Silent p.V193V 0.16 TCGA-DX-A8BP-01 2 28761968 28761968 C T PLB1 Silent p.V207V 0.25 TCGA-DX-A8BP-01 2 29274679 29274679 C T FAM179A Missense_Mutation p.P927L 0.28 deleterious(0.01) probably_damaging(1) TCGA-DX-A8BP-01 2 29294268 29294268 G A C2orf71 Missense_Mutation p.P954S 0.10 tolerated(0.44) benign(0.099) TCGA-DX-A8BP-01 2 32843603 32843603 T C BIRC6 3'UTR 0.38 TCGA-DX-A8BP-01 2 33525536 33525536 A C LTBP1 Missense_Mutation p.Q1085P 0.29 tolerated(0.27) benign(0.433) TCGA-DX-A8BP-01 2 42119809 42119809 C T AC104654.1 RNA 0.44 TCGA-DX-A8BP-01 2 42180297 42180297 G A C2orf91 Silent p.L47L 0.17 TCGA-DX-A8BP-01 2 46412563 46412563 G A PRKCE 3'UTR 0.31 TCGA-DX-A8BP-01 2 46707682 46707682 G A TMEM247 Missense_Mutation p.G86R 0.28 deleterious(0.03) probably_damaging(0.954) TCGA-DX-A8BP-01 2 47129235 47129235 A T MCFD2 3'UTR 0.09 TCGA-DX-A8BP-01 2 48914821 48914821 T C LHCGR 3'UTR 0.31 TCGA-DX-A8BP-01 2 49190277 49190277 G A FSHR Silent p.I561I 0.31 TCGA-DX-A8BP-01 2 55887311 55887311 T C PNPT1 Missense_Mutation p.N422S 0.26 deleterious(0.03) possibly_damaging(0.629) TCGA-DX-A8BP-01 2 63660899 63660899 A G WDPCP Missense_Mutation p.Y269H 0.19 tolerated(0.53) benign(0.013) TCGA-DX-A8BP-01 2 65541002 65541002 G A SPRED2 Missense_Mutation p.S297L 0.13 tolerated(0.33) benign(0.002) TCGA-DX-A8BP-01 2 69372527 69372527 C T ANTXR1 Intron 0.30 TCGA-DX-A8BP-01 2 69700110 69700110 G A AAK1 3'UTR 0.15 TCGA-DX-A8BP-01 2 71043961 71043961 C G CLEC4F Missense_Mutation p.K184N 0.15 tolerated(0.05) benign(0.223) TCGA-DX-A8BP-01 2 71650322 71650322 T C ZNF638 Silent p.S1226S 0.36 TCGA-DX-A8BP-01 2 73836903 73836903 C T ALMS1 3'UTR 0.23 TCGA-DX-A8BP-01 2 74007202 74007202 C T DUSP11 Missense_Mutation p.C14Y 0.16 deleterious_low_confidence(0.03) probably_damaging(0.919) TCGA-DX-A8BP-01 2 74274129 74274129 C T TET3 Missense_Mutation p.A227V 0.15 deleterious(0) probably_damaging(0.997) TCGA-DX-A8BP-01 2 74653172 74653172 C T RTKN 3'UTR 0.16 TCGA-DX-A8BP-01 2 74718727 74718727 C T TTC31 Silent p.A268A 0.26 TCGA-DX-A8BP-01 2 75094807 75094807 C T HK2 Missense_Mutation p.R91C 0.17 deleterious(0.02) benign(0.018) TCGA-DX-A8BP-01 2 75425870 75425870 C T TACR1 Missense_Mutation p.R64K 0.18 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 2 77745775 77745775 C T LRRTM4 Missense_Mutation p.G407E 0.13 tolerated(1) benign(0) TCGA-DX-A8BP-01 2 84686377 84686377 G C SUCLG1 Missense_Mutation p.A6G 0.11 tolerated_low_confidence(0.31) unknown(0) TCGA-DX-A8BP-01 2 89104315 89104315 A T ANKRD36BP2 RNA 0.18 TCGA-DX-A8BP-01 2 8946487 8946487 G A KIDINS220 Missense_Mutation p.P173S 0.25 tolerated(0.08) benign(0.364) TCGA-DX-A8BP-01 2 89475843 89475843 A G IGKV2-24 Missense_Mutation p.V110A 0.31 deleterious(0.03) benign(0.431) TCGA-DX-A8BP-01 2 97351776 97351776 G A FER1L5 RNA 0.12 TCGA-DX-A8BP-01 2 97351777 97351777 G A FER1L5 RNA 0.13 TCGA-DX-A8BP-01 2 97363811 97363811 A G FER1L5 RNA 0.16 TCGA-DX-A8BP-01 2 97498861 97498861 T C CNNM3 3'UTR 0.08 TCGA-DX-A8BP-01 2 98340581 98340581 G A ZAP70 Missense_Mutation p.G28S 0.30 tolerated(0.06) probably_damaging(0.958) TCGA-DX-A8BP-01 3 107474465 107474465 G A BBX Silent p.Q282Q 0.28 TCGA-DX-A8BP-01 3 108778673 108778673 C T MORC1 Silent p.K337K 0.20 TCGA-DX-A8BP-01 3 112184524 112184524 C T BTLA 3'UTR 0.35 TCGA-DX-A8BP-01 3 119325719 119325719 C T PLA1A Missense_Mutation p.P58S 0.22 tolerated(0.57) benign(0.019) TCGA-DX-A8BP-01 3 119325815 119325815 G A PLA1A Missense_Mutation p.G90R 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 3 119887100 119887100 C T GPR156 Silent p.K408K 0.39 TCGA-DX-A8BP-01 3 121203989 121203989 G A POLQ Missense_Mutation p.P1891L 0.55 deleterious(0.02) possibly_damaging(0.842) TCGA-DX-A8BP-01 3 121356022 121356022 C T HCLS1 Missense_Mutation p.G179E 0.40 tolerated(0.21) unknown(0) TCGA-DX-A8BP-01 3 121634085 121634085 G A SLC15A2 Silent p.R180R 0.39 TCGA-DX-A8BP-01 3 123946890 123946890 G A KALRN Missense_Mutation p.E41K 0.40 deleterious(0) probably_damaging(0.97) TCGA-DX-A8BP-01 3 126071535 126071535 C T KLF15 Silent p.L77L 0.50 TCGA-DX-A8BP-01 3 126142403 126142403 A G CCDC37 Missense_Mutation p.N401S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BP-01 3 126201111 126201111 G A UROC1 3'UTR 0.33 TCGA-DX-A8BP-01 3 126752950 126752950 G A PLXNA1 3'UTR 0.12 TCGA-DX-A8BP-01 3 127409620 127409620 C T MGLL 3'UTR 0.18 TCGA-DX-A8BP-01 3 128879986 128879986 G A ISY1 5'Flank 0.23 TCGA-DX-A8BP-01 3 129274090 129274090 G A PLXND1 3'UTR 0.32 TCGA-DX-A8BP-01 3 130098458 130098458 C T COL6A5 Missense_Mutation p.L289F 0.18 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 3 130289705 130289705 T C COL6A6 Silent p.D815D 0.40 TCGA-DX-A8BP-01 3 133119036 133119036 G A BFSP2 Missense_Mutation p.E37K 0.41 tolerated(0.11) benign(0.119) TCGA-DX-A8BP-01 3 138461469 138461469 G A PIK3CB Silent p.I184I 0.41 TCGA-DX-A8BP-01 3 138724603 138724603 C T PRR23A Missense_Mutation p.D170N 0.14 tolerated(0.09) probably_damaging(0.966) TCGA-DX-A8BP-01 3 147105490 147105490 G A ZIC4 3'UTR 0.40 TCGA-DX-A8BP-01 3 14756898 14756898 G C C3orf20 Silent p.L472L 0.09 TCGA-DX-A8BP-01 3 15283684 15283684 G A CAPN7 Splice_Site p.X597_splice 0.16 TCGA-DX-A8BP-01 3 156638446 156638446 G A LEKR1 Missense_Mutation p.E116K 0.33 deleterious(0.04) possibly_damaging(0.486) TCGA-DX-A8BP-01 3 167248902 167248902 C T WDR49 Splice_Site p.X388_splice 0.30 TCGA-DX-A8BP-01 3 169487279 169487279 G A ACTRT3 Silent p.I10I 0.53 TCGA-DX-A8BP-01 3 169558092 169558092 A G LRRC31 Missense_Mutation p.I446T 0.42 tolerated(0.2) benign(0.045) TCGA-DX-A8BP-01 3 172163015 172163015 C T GHSR Missense_Mutation p.R346K 0.19 tolerated(0.16) benign(0.008) TCGA-DX-A8BP-01 3 172363419 172363419 G A NCEH1 Missense_Mutation p.S184F 0.24 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 3 179069740 179069740 A T MFN1 Silent p.V55V 0.20 TCGA-DX-A8BP-01 3 179107853 179107853 G A MFN1 Missense_Mutation p.E692K 0.13 deleterious(0.05) possibly_damaging(0.811) TCGA-DX-A8BP-01 3 179533684 179533684 C T PEX5L Missense_Mutation p.E350K 0.36 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BP-01 3 180377345 180377345 T C CCDC39 Silent p.Q211Q 0.08 TCGA-DX-A8BP-01 3 18389787 18389787 C T SATB1 3'UTR 0.18 TCGA-DX-A8BP-01 3 186299164 186299164 T A DNAJB11 Missense_Mutation p.V154D 0.50 deleterious(0.05) benign(0.351) TCGA-DX-A8BP-01 3 187896792 187896792 G A AC022498.1 5'UTR 0.40 TCGA-DX-A8BP-01 3 195300824 195300824 C T APOD Missense_Mutation p.E48K 0.12 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 3 195511055 195511055 G A MUC4 Missense_Mutation p.P2466S 0.06 unknown(0) TCGA-DX-A8BP-01 3 195778717 195778724 TCAGGTTT - TFRC 3'UTR 0.15 TCGA-DX-A8BP-01 3 20194372 20194372 C T KAT2B 3'UTR 0.14 TCGA-DX-A8BP-01 3 32574576 32574576 C T DYNC1LI1 Missense_Mutation p.D328N 0.65 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 3 32933059 32933059 G A TRIM71 Missense_Mutation p.G788D 0.13 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BP-01 3 37366733 37366733 C T GOLGA4 Missense_Mutation p.S1141F 0.48 possibly_damaging(0.908) TCGA-DX-A8BP-01 3 38010914 38010914 C T CTDSPL Intron 0.48 TCGA-DX-A8BP-01 3 38889049 38889049 G A SCN11A Silent p.L1504L 0.58 TCGA-DX-A8BP-01 3 39307107 39307107 C T CX3CR1 Silent p.E330E 0.40 TCGA-DX-A8BP-01 3 41497047 41497047 C T ULK4 Missense_Mutation p.E1145K 0.14 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 3 44777695 44777695 G A ZNF501 3'UTR 0.12 TCGA-DX-A8BP-01 3 45963208 45963208 G A FYCO1 3'UTR 0.52 TCGA-DX-A8BP-01 3 47162049 47162049 G A SETD2 Silent p.S1359S 0.38 TCGA-DX-A8BP-01 3 47374754 47374754 C T KLHL18 Silent p.F236F 0.45 TCGA-DX-A8BP-01 3 4817110 4817110 C T ITPR1 Missense_Mutation p.P2040L 0.07 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 3 48461037 48461037 G A PLXNB1 Silent p.I886I 0.57 TCGA-DX-A8BP-01 3 49934060 49934060 G A MST1R Silent p.S784S 0.44 TCGA-DX-A8BP-01 3 50137712 50137712 C T RBM5 Intron 0.51 TCGA-DX-A8BP-01 3 50334233 50334233 G A NAT6 Missense_Mutation p.P243L 0.21 deleterious(0.01) benign(0.376) TCGA-DX-A8BP-01 3 51297659 51297659 G A DOCK3 Missense_Mutation p.E753K 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-DX-A8BP-01 3 52467676 52467676 C T SEMA3G 3'UTR 0.53 TCGA-DX-A8BP-01 3 57126147 57126147 G A IL17RD 3'UTR 0.56 TCGA-DX-A8BP-01 3 62189327 62189327 C T PTPRG Nonsense_Mutation p.Q620* 0.16 TCGA-DX-A8BP-01 3 62570972 62570972 G A CADPS Missense_Mutation p.P489S 0.62 tolerated(0.96) possibly_damaging(0.641) TCGA-DX-A8BP-01 3 64085357 64085357 G A PRICKLE2 Silent p.S635S 0.50 TCGA-DX-A8BP-01 3 71830639 71830639 G A PROK2 Silent p.S67S 0.44 TCGA-DX-A8BP-01 3 81754754 81754754 A G GBE1 Missense_Mutation p.F52L 0.59 tolerated(0.12) benign(0.016) TCGA-DX-A8BP-01 3 86116275 86116275 C T CADM2 3'Flank 0.11 TCGA-DX-A8BP-01 3 8671360 8671360 C T SSUH2 Missense_Mutation p.G193E 0.44 deleterious(0) probably_damaging(0.99) TCGA-DX-A8BP-01 3 9514951 9514951 A C SETD5 Missense_Mutation p.Q1076P 0.17 deleterious(0) probably_damaging(0.993) TCGA-DX-A8BP-01 3 9986396 9986396 G A CRELD1 3'UTR 0.48 TCGA-DX-A8BP-01 4 103538327 103538327 C T NFKB1 3'UTR 0.26 TCGA-DX-A8BP-01 4 107845759 107845759 G A DKK2 Missense_Mutation p.H158Y 0.22 deleterious(0.04) benign(0.139) TCGA-DX-A8BP-01 4 114203899 114203899 C T ANK2 Silent p.N650N 0.39 TCGA-DX-A8BP-01 4 118975802 118975802 C T NDST3 Missense_Mutation p.P246L 0.27 tolerated(0.62) benign(0.004) TCGA-DX-A8BP-01 4 119554750 119554750 C T RP11-384K6.6 RNA 0.18 TCGA-DX-A8BP-01 4 126239533 126239533 C T FAT4 Missense_Mutation p.S656F 0.28 possibly_damaging(0.477) TCGA-DX-A8BP-01 4 138441715 138441715 G A PCDH18 3'UTR 0.32 TCGA-DX-A8BP-01 4 146824106 146824106 G A ZNF827 Missense_Mutation p.S102F 0.18 deleterious(0) probably_damaging(0.988) TCGA-DX-A8BP-01 4 15341800 15341800 G A C1QTNF7 5'UTR 0.24 TCGA-DX-A8BP-01 4 156135355 156135355 C T NPY2R Silent p.F88F 0.24 TCGA-DX-A8BP-01 4 156638447 156638447 C T GUCY1A3 Missense_Mutation p.P570L 0.27 deleterious(0.05) benign(0.022) TCGA-DX-A8BP-01 4 173734807 173734807 G A GALNTL6 Missense_Mutation p.E286K 0.28 tolerated(0.18) probably_damaging(1) TCGA-DX-A8BP-01 4 17503362 17503362 G A QDPR Missense_Mutation p.A139V 0.19 tolerated(0.05) benign(0.444) TCGA-DX-A8BP-01 4 187476495 187476495 G A MTNR1A Missense_Mutation p.P9S 0.31 tolerated(0.6) benign(0) TCGA-DX-A8BP-01 4 22404412 22404412 C T GPR125 Missense_Mutation p.G748E 0.27 tolerated(0.39) benign(0.003) TCGA-DX-A8BP-01 4 3188392 3188392 C T HTT Silent p.S1645S 0.32 TCGA-DX-A8BP-01 4 37831663 37831663 C T PGM2 Silent p.A53A 0.15 TCGA-DX-A8BP-01 4 38800467 38800467 C T TLR1 5'UTR 0.17 TCGA-DX-A8BP-01 4 39448830 39448830 T C KLB Silent p.T828T 0.29 TCGA-DX-A8BP-01 4 42088326 42088326 A G SLC30A9 3'UTR 0.15 TCGA-DX-A8BP-01 4 435581 435581 G A ZNF721 Missense_Mutation p.P892L 0.22 deleterious(0.03) possibly_damaging(0.856) TCGA-DX-A8BP-01 4 46086053 46086053 C T GABRG1 Missense_Mutation p.E91K 0.35 tolerated(1) benign(0.26) TCGA-DX-A8BP-01 4 48038018 48038018 A G NIPAL1 Silent p.L354L 0.15 TCGA-DX-A8BP-01 4 57302077 57302077 C T PAICS 5'Flank 0.33 TCGA-DX-A8BP-01 4 69054352 69054352 C T TMPRSS11BNL 3'UTR 0.20 TCGA-DX-A8BP-01 4 69519760 69519760 G A UGT2B15 Silent p.D436D 0.21 TCGA-DX-A8BP-01 4 70079817 70079817 C T UGT2B11 Missense_Mutation p.M208I 0.20 tolerated(0.12) benign(0.012) TCGA-DX-A8BP-01 4 71555131 71555131 C G UTP3 Missense_Mutation p.P246R 0.24 deleterious(0) probably_damaging(0.996) TCGA-DX-A8BP-01 4 71768104 71768104 G A MOB1B 5'UTR 0.26 TCGA-DX-A8BP-01 4 77038823 77038823 G A NUP54 Silent p.I463I 0.38 TCGA-DX-A8BP-01 4 77065434 77065434 C T NUP54 Missense_Mutation p.G55S 0.25 tolerated(0.53) unknown(0) TCGA-DX-A8BP-01 4 79308765 79308765 T C FRAS1 Silent p.G1295G 0.11 TCGA-DX-A8BP-01 4 85525423 85525423 G A CDS1 Missense_Mutation p.D49N 0.20 tolerated(0.06) benign(0.187) TCGA-DX-A8BP-01 4 86773 86773 C T Z95704.2 RNA 0.11 TCGA-DX-A8BP-01 4 87023134 87023134 C T MAPK10 Missense_Mutation p.M159I 0.29 tolerated(0.11) benign(0.143) TCGA-DX-A8BP-01 4 88057168 88057168 G T AFF1 3'UTR 0.18 TCGA-DX-A8BP-01 4 88957450 88957450 C T PKD2 Missense_Mutation p.S263F 0.31 deleterious(0) probably_damaging(0.959) TCGA-DX-A8BP-01 4 89034698 89034698 C T ABCG2 Silent p.E317E 0.33 TCGA-DX-A8BP-01 4 92007137 92007137 G A CCSER1 Missense_Mutation p.G737R 0.20 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-DX-A8BP-01 4 95229814 95229814 G A HPGDS Missense_Mutation p.P103S 0.21 deleterious(0.02) possibly_damaging(0.529) TCGA-DX-A8BP-01 4 9557806 9557806 G A MIR548I2 RNA 0.21 TCGA-DX-A8BP-01 4 981704 981704 G A IDUA Missense_Mutation p.R89Q 0.36 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 4 981705 981705 G A IDUA Silent p.R89R 0.36 TCGA-DX-A8BP-01 5 1075560 1075560 G A SLC12A7 Silent p.F631F 0.10 TCGA-DX-A8BP-01 5 110814190 110814190 A T CAMK4 Silent p.L271L 0.12 TCGA-DX-A8BP-01 5 120021756 120021756 C T PRR16 Silent p.A66A 0.48 TCGA-DX-A8BP-01 5 135207469 135207469 G A SLC25A48 Intron 0.52 TCGA-DX-A8BP-01 5 13727761 13727761 G A DNAH5 Missense_Mutation p.S3963L 0.15 possibly_damaging(0.651) TCGA-DX-A8BP-01 5 140475385 140475385 C T PCDHB2 Silent p.V337V 0.37 TCGA-DX-A8BP-01 5 140531420 140531420 C T PCDHB6 Missense_Mutation p.R528C 0.45 deleterious(0.01) benign(0.201) TCGA-DX-A8BP-01 5 140572571 140572571 G A PCDHB10 Missense_Mutation p.G149E 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-DX-A8BP-01 5 140595648 140595648 G T PCDHB13 Silent p.P651P 0.41 TCGA-DX-A8BP-01 5 140734786 140734786 C T PCDHGA4 Missense_Mutation p.R7C 0.51 tolerated_low_confidence(0.21) benign(0.006) TCGA-DX-A8BP-01 5 140869978 140869978 C T PCDHGC5 Missense_Mutation p.P391S 0.41 tolerated(0.28) benign(0.013) TCGA-DX-A8BP-01 5 140869979 140869979 C T PCDHGC5 Missense_Mutation p.P391L 0.41 deleterious(0.02) possibly_damaging(0.517) TCGA-DX-A8BP-01 5 149629834 149629834 C T CAMK2A Silent p.E285E 0.43 TCGA-DX-A8BP-01 5 149758815 149758815 C T TCOF1 Silent p.P834P 0.62 TCGA-DX-A8BP-01 5 150696516 150696516 G A SLC36A2 Silent p.P438P 0.37 TCGA-DX-A8BP-01 5 150696517 150696517 G A SLC36A2 Missense_Mutation p.P438L 0.35 tolerated(0.81) benign(0.061) TCGA-DX-A8BP-01 5 151183496 151183496 T C G3BP1 Silent p.T415T 0.52 TCGA-DX-A8BP-01 5 15928035 15928035 G A FBXL7 Missense_Mutation p.S55N 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-DX-A8BP-01 5 162883946 162883946 A T NUDCD2 Missense_Mutation p.F127I 0.38 deleterious(0) possibly_damaging(0.476) TCGA-DX-A8BP-01 5 16666505 16666505 G A MYO10 3'UTR 0.40 TCGA-DX-A8BP-01 5 167689283 167689283 C T TENM2 Missense_Mutation p.S2598F 0.41 deleterious(0) benign(0.142) TCGA-DX-A8BP-01 5 169651 169651 G A PLEKHG4B Missense_Mutation p.E869K 0.32 deleterious(0) probably_damaging(0.995) TCGA-DX-A8BP-01 5 170308827 170308827 C T RANBP17 Silent p.L61L 0.39 TCGA-DX-A8BP-01 5 173386644 173386644 T G CPEB4 3'UTR 0.31 TCGA-DX-A8BP-01 5 176307622 176307622 C T UNC5A 3'UTR 0.52 TCGA-DX-A8BP-01 5 176638415 176638415 C T NSD1 Silent p.L1005L 0.67 TCGA-DX-A8BP-01 5 176863465 176863465 C T GRK6 Silent p.P446P 0.49 TCGA-DX-A8BP-01 5 176951573 176951573 C T FAM193B Missense_Mutation p.G637S 0.48 tolerated(0.54) benign(0.042) TCGA-DX-A8BP-01 5 37176029 37176029 G A C5orf42 Missense_Mutation p.T1987M 0.14 deleterious(0.03) benign(0.124) TCGA-DX-A8BP-01 5 38940247 38940247 A C RICTOR 3'UTR 0.13 TCGA-DX-A8BP-01 5 43492369 43492369 G A C5orf34 Missense_Mutation p.P510S 0.33 deleterious(0.03) probably_damaging(1) TCGA-DX-A8BP-01 5 462404 462404 G A EXOC3 Silent p.E545E 0.38 TCGA-DX-A8BP-01 5 52214595 52214595 G A ITGA1 Missense_Mutation p.M674I 0.09 tolerated(0.08) possibly_damaging(0.648) TCGA-DX-A8BP-01 5 5237203 5237203 G A ADAMTS16 Silent p.G715G 0.11 TCGA-DX-A8BP-01 5 56778454 56778454 G A ACTBL2 Silent p.A27A 0.82 TCGA-DX-A8BP-01 5 65118981 65118981 C T NLN 3'UTR 0.35 TCGA-DX-A8BP-01 5 66459948 66459948 T A MAST4 Missense_Mutation p.D1647E 0.52 benign(0.278) TCGA-DX-A8BP-01 5 7900441 7900441 C T MTRR 3'UTR 0.43 TCGA-DX-A8BP-01 5 82940355 82940355 C T HAPLN1 Missense_Mutation p.G201E 0.25 deleterious(0) probably_damaging(0.997) TCGA-DX-A8BP-01 5 87491967 87491967 T A TMEM161B 3'UTR 0.44 TCGA-DX-A8BP-01 6 109308293 109308293 A G SESN1 3'UTR 0.31 TCGA-DX-A8BP-01 6 123039007 123039007 G A PKIB Missense_Mutation p.R30K 0.47 deleterious(0) probably_damaging(0.992) TCGA-DX-A8BP-01 6 125146773 125146773 G A NKAIN2 3'UTR 0.33 TCGA-DX-A8BP-01 6 132938844 132938844 A G TAAR2 Silent p.C167C 0.70 TCGA-DX-A8BP-01 6 135239621 135239621 C T ALDH8A1 Missense_Mutation p.G466S 0.38 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 6 136963669 136963669 G T MAP3K5 Silent p.V609V 0.31 TCGA-DX-A8BP-01 6 157529036 157529036 A G ARID1B 3'UTR 0.10 TCGA-DX-A8BP-01 6 158485872 158485872 G A SYNJ2 Silent p.K458K 0.38 TCGA-DX-A8BP-01 6 160239686 160239686 C T PNLDC1 Silent p.I408I 0.25 TCGA-DX-A8BP-01 6 160668278 160668278 C T SLC22A2 Missense_Mutation p.A299T 0.33 deleterious(0) probably_damaging(0.98) TCGA-DX-A8BP-01 6 19839503 19839503 G A ID4 3'UTR 0.35 TCGA-DX-A8BP-01 6 26032185 26032185 C T HIST1H3B Missense_Mutation p.G35D 0.45 deleterious_low_confidence(0.01) benign(0.001) TCGA-DX-A8BP-01 6 26032186 26032186 C T HIST1H3B Missense_Mutation p.G35S 0.45 deleterious_low_confidence(0.01) benign(0.028) TCGA-DX-A8BP-01 6 29395394 29395394 C T OR11A1 Missense_Mutation p.E9K 1.00 tolerated(0.15) benign(0.001) TCGA-DX-A8BP-01 6 30867337 30867337 C T DDR1 3'UTR 0.29 TCGA-DX-A8BP-01 6 31721192 31721192 C T MSH5 Silent p.L309L 0.40 TCGA-DX-A8BP-01 6 31931480 31931480 G A SKIV2L Silent p.K539K 0.40 TCGA-DX-A8BP-01 6 32163486 32163486 G A NOTCH4 Missense_Mutation p.R1914C 0.36 deleterious_low_confidence(0) possibly_damaging(0.739) TCGA-DX-A8BP-01 6 3225685 3225685 C T TUBB2B Missense_Mutation p.R213H 0.13 deleterious_low_confidence(0.04) benign(0.029) TCGA-DX-A8BP-01 6 33162790 33162790 G A RXRB Silent p.V466V 0.27 TCGA-DX-A8BP-01 6 33284329 33284329 G A ZBTB22 Missense_Mutation p.A122V 0.21 tolerated(0.11) benign(0.322) TCGA-DX-A8BP-01 6 35395798 35395798 C T PPARD 3'UTR 0.57 TCGA-DX-A8BP-01 6 38862525 38862525 C T DNAH8 Nonsense_Mutation p.R2661* 0.48 TCGA-DX-A8BP-01 6 41874815 41874815 G A MED20 Missense_Mutation p.R212C 0.34 deleterious(0) probably_damaging(0.996) TCGA-DX-A8BP-01 6 43010622 43010622 C T CUL7 Missense_Mutation p.G1272E 0.34 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 6 43113069 43113069 T C PTK7 Silent p.L855L 0.39 TCGA-DX-A8BP-01 6 43226840 43226840 G A TTBK1 Missense_Mutation p.G361R 0.59 probably_damaging(0.987) TCGA-DX-A8BP-01 6 44253992 44253992 C T TCTE1 Silent p.R185R 0.51 TCGA-DX-A8BP-01 6 46826828 46826828 T C GPR116 Missense_Mutation p.I938V 0.52 tolerated(0.13) possibly_damaging(0.751) TCGA-DX-A8BP-01 6 47682551 47682551 G A GPR115 Missense_Mutation p.G524R 0.20 deleterious(0) probably_damaging(0.996) TCGA-DX-A8BP-01 6 52957542 52957542 C T FBXO9 Silent p.I271I 0.28 TCGA-DX-A8BP-01 6 55378832 55378832 G A HMGCLL1 Intron 0.21 TCGA-DX-A8BP-01 6 56966678 56966678 T A ZNF451 Intron 0.55 TCGA-DX-A8BP-01 6 65301274 65301274 G A EYS Missense_Mutation p.P1496S 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-DX-A8BP-01 6 71570663 71570663 A G SMAP1 3'UTR 0.35 TCGA-DX-A8BP-01 6 76017816 76017816 C T FILIP1 3'UTR 0.35 TCGA-DX-A8BP-01 6 96054071 96054071 C T MANEA Silent p.R393R 0.43 TCGA-DX-A8BP-01 6 96655506 96655506 G A FUT9 3'UTR 0.36 TCGA-DX-A8BP-01 6 96658094 96658094 G A FUT9 3'UTR 0.27 TCGA-DX-A8BP-01 7 100278717 100278717 C T GIGYF1 3'UTR 0.28 TCGA-DX-A8BP-01 7 100684070 100684070 C T MUC17 Missense_Mutation p.L3125F 0.41 benign(0.158) TCGA-DX-A8BP-01 7 103163959 103163959 G A RELN Missense_Mutation p.R2457C 0.14 deleterious(0) probably_damaging(0.98) TCGA-DX-A8BP-01 7 106508271 106508271 C T PIK3CG Missense_Mutation p.H89Y 0.33 deleterious(0.04) benign(0.05) TCGA-DX-A8BP-01 7 11676215 11676215 G A THSD7A Silent p.L188L 0.18 TCGA-DX-A8BP-01 7 122033326 122033326 G A CADPS2 Missense_Mutation p.P978S 0.39 tolerated(0.18) benign(0.184) TCGA-DX-A8BP-01 7 126173686 126173686 C T GRM8 Missense_Mutation p.A584T 0.31 deleterious(0.03) possibly_damaging(0.831) TCGA-DX-A8BP-01 7 137564743 137564743 G A CREB3L2 3'UTR 0.26 TCGA-DX-A8BP-01 7 138968887 138968887 C T UBN2 Missense_Mutation p.S1079F 0.12 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-DX-A8BP-01 7 140402735 140402735 C T NDUFB2 Silent p.F56F 0.25 TCGA-DX-A8BP-01 7 142458940 142458940 C T PRSS1 Intron 0.25 TCGA-DX-A8BP-01 7 142643301 142643301 C T KEL Missense_Mutation p.R436Q 0.46 tolerated(0.67) benign(0.017) TCGA-DX-A8BP-01 7 143633090 143633090 G A OR2F2 Silent p.T255T 0.42 TCGA-DX-A8BP-01 7 1484937 1484937 G A MICALL2 Missense_Mutation p.P257S 0.17 tolerated(0.55) benign(0.01) TCGA-DX-A8BP-01 7 151704932 151704932 G A GALNTL5 Missense_Mutation p.G310E 0.33 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 7 20785035 20785035 C T ABCB5 Missense_Mutation p.H1135Y 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-DX-A8BP-01 7 22196499 22196499 G T RAPGEF5 Missense_Mutation p.A369D 0.18 tolerated(0.18) benign(0.146) TCGA-DX-A8BP-01 7 35242097 35242097 T C TBX20 Missense_Mutation p.Y430C 0.33 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DX-A8BP-01 7 39746706 39746706 T A RALA 3'UTR 0.29 TCGA-DX-A8BP-01 7 45703978 45703978 C T ADCY1 Intron 0.45 TCGA-DX-A8BP-01 7 47835734 47835734 G C PKD1L1 Silent p.L2736L 0.21 TCGA-DX-A8BP-01 7 50671731 50671731 G A GRB10 Missense_Mutation p.S503F 0.38 deleterious(0.01) probably_damaging(0.973) TCGA-DX-A8BP-01 7 5567440 5567440 C A ACTB Missense_Mutation p.W356L 0.47 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-DX-A8BP-01 7 6068553 6068553 C T EIF2AK1 Silent p.G481G 0.42 TCGA-DX-A8BP-01 7 63538024 63538024 T C ZNF727 Silent p.S199S 0.14 TCGA-DX-A8BP-01 7 6426892 6426892 C T RAC1 Missense_Mutation p.P29S 0.30 deleterious(0) possibly_damaging(0.869) TCGA-DX-A8BP-01 7 6776938 6776938 C T PMS2CL RNA 0.30 TCGA-DX-A8BP-01 7 73113806 73113806 C T STX1A 3'UTR 0.18 TCGA-DX-A8BP-01 7 76940712 76940712 G A GSAP Missense_Mutation p.A843V 0.08 tolerated(0.23) benign(0.132) TCGA-DX-A8BP-01 7 77807378 77807378 C T MAGI2 Missense_Mutation p.E785K 0.29 tolerated(0.37) benign(0.045) TCGA-DX-A8BP-01 7 86493793 86493793 G A GRM3 3'UTR 0.42 TCGA-DX-A8BP-01 7 86509846 86509846 C T KIAA1324L Missense_Mutation p.E1011K 0.38 tolerated(0.24) benign(0.015) TCGA-DX-A8BP-01 7 86526931 86526931 G A KIAA1324L Missense_Mutation p.T859I 0.38 deleterious(0.01) possibly_damaging(0.833) TCGA-DX-A8BP-01 7 92119193 92119193 C T PEX1 Missense_Mutation p.M1157I 0.71 tolerated(0.89) benign(0) TCGA-DX-A8BP-01 7 97949598 97949598 A G BAIAP2L1 Missense_Mutation p.I76T 0.29 tolerated(0.13) benign(0.119) TCGA-DX-A8BP-01 7 99753454 99753454 G A C7orf43 Intron 0.39 TCGA-DX-A8BP-01 8 10464370 10464370 C T RP1L1 3'UTR 0.14 TCGA-DX-A8BP-01 8 110474001 110474001 G A PKHD1L1 Missense_Mutation p.G2416E 0.07 deleterious(0) possibly_damaging(0.721) TCGA-DX-A8BP-01 8 110984547 110984547 C A KCNV1 Missense_Mutation p.V311F 0.33 deleterious(0) probably_damaging(0.955) TCGA-DX-A8BP-01 8 11189398 11189398 C T SLC35G5 Silent p.I261I 0.46 TCGA-DX-A8BP-01 8 113299424 113299424 C T CSMD3 Missense_Mutation p.R3067K 0.15 tolerated(0.13) benign(0.069) TCGA-DX-A8BP-01 8 113694814 113694814 C T CSMD3 Missense_Mutation p.R845Q 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BP-01 8 114111130 114111130 G A CSMD3 Missense_Mutation p.P258S 0.21 deleterious(0) benign(0.113) TCGA-DX-A8BP-01 8 124968283 124968283 G A FER1L6 Silent p.K15K 0.28 TCGA-DX-A8BP-01 8 128750683 128750683 C T MYC Missense_Mutation p.P74S 0.40 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 8 128750684 128750684 C T MYC Missense_Mutation p.P74L 0.38 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 8 131833655 131833655 C T ADCY8 Missense_Mutation p.G896E 0.24 tolerated(1) probably_damaging(0.982) TCGA-DX-A8BP-01 8 133044234 133044234 C T OC90 Missense_Mutation p.G309R 0.42 deleterious(0) probably_damaging(0.995) TCGA-DX-A8BP-01 8 133141351 133141351 A G KCNQ3 3'UTR 0.45 TCGA-DX-A8BP-01 8 134050963 134050963 C T SLA Missense_Mutation p.G253R 0.53 tolerated(0.33) benign(0.01) TCGA-DX-A8BP-01 8 13425459 13425459 A T C8orf48 Nonstop_Mutation p.*320Lext*3 0.40 TCGA-DX-A8BP-01 8 141745469 141745469 A C PTK2 Missense_Mutation p.N637K 0.14 deleterious(0) benign(0.442) TCGA-DX-A8BP-01 8 142486217 142486217 C T MROH5 Intron 0.38 TCGA-DX-A8BP-01 8 144942969 144942969 C T EPPK1 Missense_Mutation p.E1485K 0.22 possibly_damaging(0.452) TCGA-DX-A8BP-01 8 144946231 144946231 G A EPPK1 Silent p.A397A 0.56 TCGA-DX-A8BP-01 8 145659099 145659099 C T TONSL Missense_Mutation p.G1144D 0.24 deleterious(0.01) benign(0.193) TCGA-DX-A8BP-01 8 145666390 145666390 C T TONSL Missense_Mutation p.A324T 0.27 tolerated(0.11) possibly_damaging(0.521) TCGA-DX-A8BP-01 8 17829941 17829941 G A PCM1 Missense_Mutation p.V1230M 0.16 tolerated(0.06) benign(0.067) TCGA-DX-A8BP-01 8 18079883 18079883 C T NAT1 Silent p.L171L 0.38 TCGA-DX-A8BP-01 8 21837635 21837635 C T XPO7 Missense_Mutation p.S293F 0.12 deleterious(0) probably_damaging(0.984) TCGA-DX-A8BP-01 8 22102652 22102652 C T POLR3D 5'Flank 0.50 TCGA-DX-A8BP-01 8 27927065 27927065 G A NUGGC Missense_Mutation p.L85F 0.15 deleterious(0) probably_damaging(0.986) TCGA-DX-A8BP-01 8 28748063 28748063 C T HMBOX1 5'UTR 0.25 TCGA-DX-A8BP-01 8 28909157 28909157 C T HMBOX1 3'UTR 0.19 TCGA-DX-A8BP-01 8 2965247 2965247 G A CSMD1 Silent p.F2276F 0.14 TCGA-DX-A8BP-01 8 32620868 32620868 C T NRG1 Intron 0.21 TCGA-DX-A8BP-01 8 35648138 35648138 G A UNC5D 3'UTR 0.40 TCGA-DX-A8BP-01 8 36644847 36644847 C T KCNU1 Silent p.I73I 0.24 TCGA-DX-A8BP-01 8 37729196 37729196 G A RAB11FIP1 Missense_Mutation p.P1042S 0.30 tolerated_low_confidence(0.92) benign(0.002) TCGA-DX-A8BP-01 8 37729999 37729999 G A RAB11FIP1 Missense_Mutation p.P774L 0.22 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-DX-A8BP-01 8 37797557 37797557 G A GOT1L1 5'UTR 0.17 TCGA-DX-A8BP-01 8 42692825 42692825 A G THAP1 3'UTR 0.17 TCGA-DX-A8BP-01 8 53126799 53126799 C T ST18 Missense_Mutation p.D7N 0.11 tolerated(0.17) benign(0.006) TCGA-DX-A8BP-01 8 55372039 55372039 G A SOX17 Silent p.G243G 0.38 TCGA-DX-A8BP-01 8 61496781 61496781 C T RAB2A Silent p.S67S 0.16 TCGA-DX-A8BP-01 8 62212308 62212308 C T CLVS1 5'UTR 0.26 TCGA-DX-A8BP-01 8 62212438 62212438 G A CLVS1 Missense_Mutation p.G18R 0.42 tolerated_low_confidence(0.2) benign(0) TCGA-DX-A8BP-01 8 62212557 62212557 G A CLVS1 Silent p.R57R 0.18 TCGA-DX-A8BP-01 8 77766189 77766189 A G ZFHX4 Silent p.Q2344Q 0.47 TCGA-DX-A8BP-01 8 92261935 92261935 C T SLC26A7 Missense_Mutation p.P19L 0.15 tolerated(0.7) benign(0.004) TCGA-DX-A8BP-01 8 93017322 93017322 C T RUNX1T1 Intron 0.25 TCGA-DX-A8BP-01 8 95952344 95952344 G A TP53INP1 Missense_Mutation p.L73F 0.15 tolerated(0.11) benign(0.206) TCGA-DX-A8BP-01 9 100380134 100380134 C T TSTD2 Missense_Mutation p.V170M 0.35 deleterious(0) probably_damaging(0.977) TCGA-DX-A8BP-01 9 102861322 102861322 C T ERP44 5'UTR 0.11 TCGA-DX-A8BP-01 9 104124525 104124525 C T BAAT 3'UTR 0.31 TCGA-DX-A8BP-01 9 104433107 104433107 C T GRIN3A Silent p.R529R 0.33 TCGA-DX-A8BP-01 9 105767983 105767983 G A CYLC2 3'UTR 0.23 TCGA-DX-A8BP-01 9 107331952 107331952 C T OR13C8 Silent p.F168F 0.17 TCGA-DX-A8BP-01 9 108223836 108223836 T A FSD1L Missense_Mutation p.D17E 0.20 tolerated_low_confidence(0.17) unknown(0) TCGA-DX-A8BP-01 9 114296583 114296583 G A ZNF483 Nonsense_Mutation p.W224* 0.36 TCGA-DX-A8BP-01 9 114476843 114476843 A T C9orf84 Missense_Mutation p.I702N 0.24 deleterious(0) probably_damaging(0.984) TCGA-DX-A8BP-01 9 116812049 116812049 G A ZNF618 Missense_Mutation p.E730K 0.12 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BP-01 9 117103963 117103963 G A AKNA Missense_Mutation p.P1306L 0.11 tolerated(0.18) benign(0.05) TCGA-DX-A8BP-01 9 117130751 117130751 G A AKNA Missense_Mutation p.P514L 0.22 deleterious(0.03) benign(0.01) TCGA-DX-A8BP-01 9 118969860 118969860 A C PAPPA Missense_Mutation p.K535T 0.17 deleterious(0) possibly_damaging(0.728) TCGA-DX-A8BP-01 9 119739019 119739019 C T ASTN2 Missense_Mutation p.R495K 0.29 tolerated(1) unknown(0) TCGA-DX-A8BP-01 9 123367814 123367814 G A MEGF9 Missense_Mutation p.T488I 0.22 deleterious(0.04) benign(0.013) TCGA-DX-A8BP-01 9 127217163 127217163 C T GPR144 Silent p.S402S 0.16 TCGA-DX-A8BP-01 9 128099320 128099320 C T GAPVD1 Missense_Mutation p.P845S 0.18 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-DX-A8BP-01 9 128099321 128099321 C T GAPVD1 Missense_Mutation p.P845L 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DX-A8BP-01 9 129644104 129644104 C T ZBTB34 3'UTR 0.36 TCGA-DX-A8BP-01 9 130216787 130216787 C T LRSAM1 5'UTR 0.28 TCGA-DX-A8BP-01 9 130479011 130479011 C T PTRH1 5'UTR 0.47 TCGA-DX-A8BP-01 9 130698047 130698047 G A DPM2 Missense_Mutation p.S70F 0.29 deleterious(0.04) benign(0.053) TCGA-DX-A8BP-01 9 131115740 131115740 C T SLC27A4 Missense_Mutation p.P415L 0.09 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 9 131774519 131774519 G A SH3GLB2 Missense_Mutation p.S207F 0.15 deleterious(0.05) probably_damaging(0.972) TCGA-DX-A8BP-01 9 132404344 132404344 C T ASB6 5'UTR 0.32 TCGA-DX-A8BP-01 9 132576327 132576327 G A TOR1A Missense_Mutation p.P308L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 9 135173522 135173522 G A SETX Missense_Mutation p.P1909L 0.15 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BP-01 9 138413293 138413293 C T LCN1 5'UTR 0.12 TCGA-DX-A8BP-01 9 139113687 139113687 G A QSOX2 Missense_Mutation p.S259L 0.13 deleterious(0) possibly_damaging(0.848) TCGA-DX-A8BP-01 9 139252695 139252695 C T GPSM1 3'UTR 0.16 TCGA-DX-A8BP-01 9 139252696 139252696 C T GPSM1 3'UTR 0.16 TCGA-DX-A8BP-01 9 139407472 139407472 C T NOTCH1 Splice_Site p.X823_splice 0.31 TCGA-DX-A8BP-01 9 139417640 139417640 C A NOTCH1 Missense_Mutation p.G135V 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 9 139417641 139417641 C T NOTCH1 Splice_Site p.X135_splice 0.23 TCGA-DX-A8BP-01 9 139735596 139735596 C T RABL6 3'UTR 0.35 TCGA-DX-A8BP-01 9 139975207 139975207 C T UAP1L1 Silent p.A415A 0.18 TCGA-DX-A8BP-01 9 140331643 140331643 G A ENTPD8 Silent p.F121F 0.22 TCGA-DX-A8BP-01 9 140671250 140671250 G A EHMT1 Missense_Mutation p.E658K 0.13 tolerated(0.5) benign(0.066) TCGA-DX-A8BP-01 9 14759900 14759900 C T FREM1 Splice_Site p.X1735_splice 0.44 TCGA-DX-A8BP-01 9 14823256 14823256 C A FREM1 Missense_Mutation p.V747F 0.38 deleterious(0) possibly_damaging(0.655) TCGA-DX-A8BP-01 9 17503675 17503675 T C CNTLN 3'UTR 0.38 TCGA-DX-A8BP-01 9 17503676 17503676 T C CNTLN 3'UTR 0.43 TCGA-DX-A8BP-01 9 17503677 17503677 G T CNTLN 3'UTR 0.45 TCGA-DX-A8BP-01 9 27566980 27566980 G A C9orf72 Missense_Mutation p.P47S 0.29 tolerated(0.35) probably_damaging(0.998) TCGA-DX-A8BP-01 9 34252146 34252146 G A UBAP1 3'UTR 0.36 TCGA-DX-A8BP-01 9 34648764 34648764 T A GALT Silent p.R231R 0.43 TCGA-DX-A8BP-01 9 35841611 35841611 C T TMEM8B 5'UTR 0.21 TCGA-DX-A8BP-01 9 73235147 73235147 C T TRPM3 Missense_Mutation p.M646I 0.18 deleterious(0) possibly_damaging(0.793) TCGA-DX-A8BP-01 9 79320442 79320442 A G PRUNE2 Missense_Mutation p.W2250R 0.13 tolerated(0.23) benign(0.016) TCGA-DX-A8BP-01 9 79324330 79324330 G A PRUNE2 Silent p.L954L 0.21 TCGA-DX-A8BP-01 9 8317296 8317296 G A PTPRD 3'UTR 0.44 TCGA-DX-A8BP-01 9 84606023 84606023 C T SPATA31D1 Missense_Mutation p.S213L 0.24 tolerated(0.19) benign(0.137) TCGA-DX-A8BP-01 9 85613338 85613338 G A RASEF Missense_Mutation p.L583F 0.19 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 9 88655783 88655783 C T GOLM1 Silent p.L156L 0.23 TCGA-DX-A8BP-01 9 96860235 96860235 G T PTPDC1 Nonsense_Mutation p.E461* 0.38 TCGA-DX-A8BP-01 X 100542591 100542591 C T TAF7L Intron 0.69 TCGA-DX-A8BP-01 X 105875881 105875881 C G CXorf57 Missense_Mutation p.P336A 0.48 tolerated(0.22) benign(0.054) TCGA-DX-A8BP-01 X 106045942 106045942 G A TBC1D8B 5'UTR 0.35 TCGA-DX-A8BP-01 X 109922648 109922648 G A CHRDL1 Missense_Mutation p.L388F 0.41 tolerated(0.7) probably_damaging(0.999) TCGA-DX-A8BP-01 X 110542108 110542108 C T DCX 3'UTR 0.55 TCGA-DX-A8BP-01 X 112066260 112066260 C T AMOT Missense_Mutation p.R32H 0.18 unknown(0) TCGA-DX-A8BP-01 X 115593942 115593942 C T CT83 Splice_Site p.X25_splice 0.40 TCGA-DX-A8BP-01 X 117043924 117043924 G A KLHL13 Missense_Mutation p.P239S 0.33 tolerated(0.44) benign(0.042) TCGA-DX-A8BP-01 X 123630962 123630962 A G TENM1 Missense_Mutation p.L1200S 0.50 deleterious(0) probably_damaging(0.915) TCGA-DX-A8BP-01 X 123637445 123637445 G A TENM1 Missense_Mutation p.S1137F 0.42 deleterious(0) benign(0.372) TCGA-DX-A8BP-01 X 129190726 129190726 G A BCORL1 3'UTR 0.42 TCGA-DX-A8BP-01 X 132161247 132161247 G A USP26 Silent p.P334P 0.50 TCGA-DX-A8BP-01 X 134166796 134166796 G A FAM127A 3'UTR 0.51 TCGA-DX-A8BP-01 X 135427472 135427472 C T GPR112 Missense_Mutation p.S536F 0.69 tolerated(0.17) benign(0.03) TCGA-DX-A8BP-01 X 138678842 138678842 C T MCF2 Missense_Mutation p.D791N 0.42 deleterious(0) possibly_damaging(0.573) TCGA-DX-A8BP-01 X 14748755 14748755 G A GLRA2 3'UTR 0.52 TCGA-DX-A8BP-01 X 147744250 147744250 G A AFF2 Silent p.K334K 0.57 TCGA-DX-A8BP-01 X 147744270 147744270 C T AFF2 Missense_Mutation p.T341I 0.57 deleterious(0.02) probably_damaging(0.996) TCGA-DX-A8BP-01 X 151821633 151821633 C A GABRQ Missense_Mutation p.F596L 0.12 tolerated(0.39) benign(0.007) TCGA-DX-A8BP-01 X 15381437 15381437 G A FIGF Missense_Mutation p.S32L 0.60 tolerated(0.18) benign(0.001) TCGA-DX-A8BP-01 X 17739680 17739680 C T NHS Silent p.L324L 0.59 TCGA-DX-A8BP-01 X 26157607 26157607 C T MAGEB18 Missense_Mutation p.P169S 0.53 tolerated(0.3) possibly_damaging(0.817) TCGA-DX-A8BP-01 X 295211 295211 G A PPP2R3B Missense_Mutation p.A540V 0.14 tolerated_low_confidence(0.23) benign(0.003) TCGA-DX-A8BP-01 X 30236748 30236748 G A MAGEB2 Silent p.K17K 0.33 TCGA-DX-A8BP-01 X 34148170 34148170 G A FAM47A Silent p.F742F 0.42 TCGA-DX-A8BP-01 X 34149601 34149601 C T FAM47A Silent p.L265L 0.49 TCGA-DX-A8BP-01 X 35944249 35944249 C T CXorf22 Missense_Mutation p.S122L 0.56 tolerated(0.66) benign(0.013) TCGA-DX-A8BP-01 X 36083813 36083813 C T CHDC2 5'UTR 0.44 TCGA-DX-A8BP-01 X 38280411 38280411 G A OTC 3'UTR 0.50 TCGA-DX-A8BP-01 X 43662639 43662639 G A MAOB Missense_Mutation p.P98S 0.52 tolerated(0.26) benign(0.007) TCGA-DX-A8BP-01 X 48847539 48847539 G A GRIPAP1 Intron 0.40 TCGA-DX-A8BP-01 X 49853357 49853357 C T CLCN5 Silent p.I520I 0.39 TCGA-DX-A8BP-01 X 50659392 50659392 G A BMP15 Missense_Mutation p.G322R 0.47 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 X 53226161 53226178 GGAGGGCAGTGAGGCCAG - KDM5C In_Frame_Del p.L891_S896del 0.39 TCGA-DX-A8BP-01 X 53455478 53455478 G A RIBC1 Silent p.R149R 0.62 TCGA-DX-A8BP-01 X 70387097 70387097 C T NLGN3 Missense_Mutation p.P384S 0.45 deleterious(0) probably_damaging(1) TCGA-DX-A8BP-01 X 70793760 70793760 T C OGT 3'UTR 0.50 TCGA-DX-A8BP-01 X 71417246 71417246 C T PIN4 Missense_Mutation p.S114F 0.77 deleterious(0) probably_damaging(0.946) TCGA-DX-A8BP-01 X 73064051 73064051 G A XIST RNA 0.57 TCGA-DX-A8BP-01 X 73812544 73812544 G A RLIM Silent p.V202V 0.54 TCGA-DX-A8BP-01 X 77289141 77289141 C T ATP7A Silent p.F1111F 0.35 TCGA-DX-A8BP-01 X 7811269 7811269 G A VCX Missense_Mutation p.G9R 0.24 deleterious_low_confidence(0) unknown(0) TCGA-DX-A8BP-01 X 89176958 89176958 G A TGIF2LX 5'UTR 0.36 TCGA-DX-A8BP-01 X 99956529 99956529 T A SYTL4 Missense_Mutation p.N84I 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BP-01 Y 21635821 21635821 C T BCORP1 RNA 0.56 TCGA-DX-A8BP-01 Y 6115641 6115641 C T TSPY2 Silent p.I201I 0.14 TCGA-DX-A8BR-01 10 105349291 105349291 C T NEURL1 Missense_Mutation p.R454W 0.22 deleterious(0.02) possibly_damaging(0.613) TCGA-DX-A8BR-01 10 3823654 3823654 T C KLF6 Intron 0.27 TCGA-DX-A8BR-01 10 43285807 43285807 A G BMS1 Missense_Mutation p.M162V 0.31 deleterious(0) possibly_damaging(0.88) TCGA-DX-A8BR-01 10 7657968 7657968 T C ITIH5 Missense_Mutation p.M306V 0.53 deleterious(0) probably_damaging(0.917) TCGA-DX-A8BR-01 11 71809346 71809346 C T LAMTOR1 Missense_Mutation p.D128N 0.36 tolerated(0.06) probably_damaging(0.928) TCGA-DX-A8BR-01 12 4705324 4705324 G A DYRK4 Missense_Mutation p.D98N 0.31 deleterious(0) probably_damaging(1) TCGA-DX-A8BR-01 12 53069193 53069193 G A KRT1 Silent p.G573G 0.33 TCGA-DX-A8BR-01 12 56553915 56553915 A G MYL6 Missense_Mutation p.H111R 0.38 deleterious(0) possibly_damaging(0.596) TCGA-DX-A8BR-01 12 95927128 95927128 A - USP44 Frame_Shift_Del p.L302* 0.24 TCGA-DX-A8BR-01 14 89060780 89060780 G C ZC3H14 Intron 0.28 TCGA-DX-A8BR-01 15 55647016 55647016 C T PIGB Missense_Mutation p.P453L 0.43 deleterious(0.02) benign(0.15) TCGA-DX-A8BR-01 16 15832545 15832545 C G MYH11 Missense_Mutation p.E1007Q 0.31 probably_damaging(0.997) TCGA-DX-A8BR-01 16 3254752 3254752 G C OR1F1 Missense_Mutation p.C169S 0.31 deleterious(0) possibly_damaging(0.58) TCGA-DX-A8BR-01 17 32483162 32483162 G A ASIC2 Silent p.D130D 0.31 TCGA-DX-A8BR-01 17 47295202 47295202 C T ABI3 Silent p.N129N 0.37 TCGA-DX-A8BR-01 17 56382430 56382430 C A BZRAP1 Nonsense_Mutation p.E1846* 0.33 TCGA-DX-A8BR-01 17 65689636 65689637 TC - PITPNC1 3'Flank 0.31 TCGA-DX-A8BR-01 17 7576525 7576525 A C TP53 Intron 0.64 TCGA-DX-A8BR-01 18 8831766 8831766 C T SOGA2 3'UTR 0.21 TCGA-DX-A8BR-01 19 20229235 20229235 G A ZNF90 Missense_Mutation p.G291D 0.37 deleterious(0.04) possibly_damaging(0.865) TCGA-DX-A8BR-01 19 49514351 49514351 G T RUVBL2 Splice_Site p.X294_splice 0.26 TCGA-DX-A8BR-01 19 54866934 54866934 T C LAIR1 Silent p.P269P 0.36 TCGA-DX-A8BR-01 1 165649861 165649861 C A ALDH9A1 Nonsense_Mutation p.E218* 0.26 TCGA-DX-A8BR-01 1 21903986 21903986 G C ALPL Missense_Mutation p.V474L 0.36 deleterious(0.01) probably_damaging(0.998) TCGA-DX-A8BR-01 1 247063653 247063653 C A AHCTF1 Missense_Mutation p.M421I 0.63 deleterious(0) probably_damaging(0.992) TCGA-DX-A8BR-01 1 85555896 85555896 C T WDR63 Missense_Mutation p.L280F 0.26 deleterious(0.03) benign(0.02) TCGA-DX-A8BR-01 20 60511837 60511837 G T CDH4 Missense_Mutation p.D863Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BR-01 22 24086482 24086482 G A ZNF70 Silent p.C282C 0.14 TCGA-DX-A8BR-01 22 29724048 29724048 A T AP1B1 3'UTR 0.57 TCGA-DX-A8BR-01 2 220041005 220041005 A C CNPPD1 Missense_Mutation p.Y40D 0.21 deleterious(0) probably_damaging(0.966) TCGA-DX-A8BR-01 3 120115622 120115622 C G FSTL1 3'UTR 0.29 TCGA-DX-A8BR-01 3 123680203 123680203 G C CCDC14 5'UTR 0.12 TCGA-DX-A8BR-01 3 139085946 139085946 C G COPB2 Missense_Mutation p.W529C 0.23 deleterious(0) probably_damaging(1) TCGA-DX-A8BR-01 3 139087001 139087001 C G COPB2 Missense_Mutation p.E511Q 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-DX-A8BR-01 3 42781189 42781189 C T CCDC13 Silent p.K367K 0.60 TCGA-DX-A8BR-01 3 47610660 47610660 G A CSPG5 Silent p.A480A 0.68 TCGA-DX-A8BR-01 4 134111696 134111696 A - PCDH10 3'UTR 0.25 TCGA-DX-A8BR-01 4 164393600 164393600 T A TKTL2 Silent p.G429G 0.08 TCGA-DX-A8BR-01 4 183522238 183522238 G A TENM3 Missense_Mutation p.E225K 0.76 deleterious_low_confidence(0.03) possibly_damaging(0.635) TCGA-DX-A8BR-01 4 81791167 81791167 C G C4orf22 Missense_Mutation p.D135E 0.44 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BR-01 5 131307262 131307262 C T ACSL6 Missense_Mutation p.R472Q 0.33 deleterious(0) benign(0.126) TCGA-DX-A8BR-01 5 13793644 13793644 G A DNAH5 Missense_Mutation p.A2735V 0.38 possibly_damaging(0.787) TCGA-DX-A8BR-01 5 140214124 140214124 G A PCDHA7 Silent p.L52L 0.29 TCGA-DX-A8BR-01 5 159912453 159912453 A C MIR146A RNA 0.37 TCGA-DX-A8BR-01 6 106967377 106967377 G C AIM1 Missense_Mutation p.R357T 0.42 tolerated_low_confidence(0.52) benign(0) TCGA-DX-A8BR-01 6 106967940 106967940 G C AIM1 Missense_Mutation p.V545L 0.16 deleterious_low_confidence(0) benign(0.436) TCGA-DX-A8BR-01 6 106968274 106968274 G A AIM1 Missense_Mutation p.G656E 0.28 tolerated(0.09) benign(0.009) TCGA-DX-A8BR-01 6 109689644 109689644 T C CD164 3'UTR 0.23 TCGA-DX-A8BR-01 6 129833555 129833555 C T LAMA2 Missense_Mutation p.R2969C 0.38 deleterious(0) probably_damaging(1) TCGA-DX-A8BR-01 6 26124497 26124497 G A HIST1H2AC Missense_Mutation p.A13T 0.35 tolerated_low_confidence(0.15) unknown(0) TCGA-DX-A8BR-01 6 30954828 30954828 A C MUC21 Silent p.T292T 0.33 TCGA-DX-A8BR-01 6 44221273 44221273 C G HSP90AB1 Missense_Mutation p.P705A 0.18 tolerated(0.7) benign(0.001) TCGA-DX-A8BR-01 6 84234189 84234189 G A PRSS35 Silent p.S343S 0.35 TCGA-DX-A8BR-01 7 31864525 31864525 G A PDE1C Silent p.I514I 0.53 TCGA-DX-A8BR-01 7 62809694 62809694 G A AC006455.1 5'UTR 0.19 TCGA-DX-A8BR-01 7 86824804 86824804 T A DMTF1 3'UTR 0.32 TCGA-DX-A8BR-01 8 144989580 144989580 G C PLEC 3'UTR 0.44 TCGA-DX-A8BR-01 9 96061384 96061384 G A WNK2 Missense_Mutation p.A2023T 0.25 unknown(0) TCGA-DX-A8BR-01 X 100744162 100744162 G A ARMCX4 Missense_Mutation p.A196T 0.29 probably_damaging(0.911) TCGA-DX-A8BR-01 X 84520144 84520144 G A ZNF711 Missense_Mutation p.E267K 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-DX-A8BT-01 10 127525252 127525252 G A DHX32 3'UTR 0.06 TCGA-DX-A8BT-01 10 127525360 127525360 G A DHX32 Silent p.L710L 0.06 TCGA-DX-A8BT-01 10 133976911 133976911 C T JAKMIP3 Nonsense_Mutation p.Q805* 0.07 TCGA-DX-A8BT-01 10 49384176 49384176 A T FRMPD2 Intron 0.17 TCGA-DX-A8BT-01 10 5566930 5566930 G T CALML3 5'UTR 0.25 TCGA-DX-A8BT-01 11 134126509 134126509 G C ACAD8 Missense_Mutation p.E59D 0.12 deleterious(0) possibly_damaging(0.845) TCGA-DX-A8BT-01 11 1491378 1491378 G A MOB2 3'UTR 0.31 TCGA-DX-A8BT-01 11 314332 314332 C T IFITM1 Silent p.F54F 0.27 TCGA-DX-A8BT-01 11 78497988 78497988 T A TENM4 Nonsense_Mutation p.K774* 0.22 TCGA-DX-A8BT-01 12 108051405 108051405 C A BTBD11 Silent p.T1075T 0.39 TCGA-DX-A8BT-01 12 43821218 43821218 C A ADAMTS20 Nonsense_Mutation p.E1334* 0.11 TCGA-DX-A8BT-01 12 49993263 49993263 G C FAM186B Silent p.L720L 0.12 TCGA-DX-A8BT-01 12 52886582 52886582 G A KRT6A Missense_Mutation p.P131S 0.15 deleterious(0.03) possibly_damaging(0.463) TCGA-DX-A8BT-01 12 6753720 6753720 A C ACRBP Missense_Mutation p.V176G 0.73 deleterious(0) possibly_damaging(0.893) TCGA-DX-A8BT-01 12 9307325 9307325 C T PZP Missense_Mutation p.A1221T 0.27 tolerated(0.15) benign(0.035) TCGA-DX-A8BT-01 13 26043135 26043135 G T ATP8A2 Missense_Mutation p.G33C 0.53 deleterious(0) probably_damaging(0.935) TCGA-DX-A8BT-01 14 23822003 23822003 C G SLC22A17 5'UTR 0.62 TCGA-DX-A8BT-01 14 42373558 42373558 G T LRFN5 3'UTR 0.59 TCGA-DX-A8BT-01 14 68214846 68214846 C T ZFYVE26 3'UTR 0.45 TCGA-DX-A8BT-01 15 50534992 50534992 G A HDC Missense_Mutation p.P485L 0.42 deleterious(0.04) benign(0.017) TCGA-DX-A8BT-01 15 78452499 78452499 C T IDH3A Silent p.I80I 0.13 TCGA-DX-A8BT-01 15 78452504 78452504 C T IDH3A Missense_Mutation p.S82L 0.14 tolerated(0.07) benign(0.003) TCGA-DX-A8BT-01 15 83486833 83486833 C A WHAMM Missense_Mutation p.Q366K 0.07 tolerated(0.1) benign(0.311) TCGA-DX-A8BT-01 16 4624985 4624985 A T C16orf96 Missense_Mutation p.N207Y 0.29 deleterious(0) probably_damaging(0.968) TCGA-DX-A8BT-01 16 50357503 50357503 C A BRD7 Nonsense_Mutation p.E480* 0.39 TCGA-DX-A8BT-01 16 72166711 72166711 C A PMFBP1 Silent p.L461L 0.37 TCGA-DX-A8BT-01 17 81052524 81052524 A G METRNL 3'UTR 0.34 TCGA-DX-A8BT-01 18 29709106 29709106 C A RNF138 Missense_Mutation p.Q232K 0.08 deleterious(0.04) possibly_damaging(0.526) TCGA-DX-A8BT-01 18 50985690 50985690 G A DCC Missense_Mutation p.E1161K 0.26 deleterious(0) probably_damaging(0.98) TCGA-DX-A8BT-01 19 11353984 11353984 A C DOCK6 Missense_Mutation p.F446V 0.11 tolerated(0.29) benign(0.065) TCGA-DX-A8BT-01 19 17086902 17086902 G T CPAMD8 Silent p.I653I 0.23 TCGA-DX-A8BT-01 19 19384023 19384023 A G TM6SF2 Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-DX-A8BT-01 19 23405795 23405795 C T ZNF724P Missense_Mutation p.G418R 0.20 tolerated(0.06) probably_damaging(1) TCGA-DX-A8BT-01 19 35851087 35851087 T C FFAR3 3'UTR 0.40 TCGA-DX-A8BT-01 19 39819656 39819656 G C GMFG Missense_Mutation p.T114R 0.12 tolerated(0.29) benign(0.366) TCGA-DX-A8BT-01 19 48248837 48248837 C T GLTSCR2 Silent p.G7G 0.32 TCGA-DX-A8BT-01 19 8553897 8553897 G C HNRNPM 3'UTR 0.15 TCGA-DX-A8BT-01 1 158261127 158261127 C T CD1C Missense_Mutation p.R89C 0.61 deleterious(0.05) benign(0.049) TCGA-DX-A8BT-01 1 168250288 168250288 C A TBX19 5'UTR 0.23 TCGA-DX-A8BT-01 1 180257470 180257470 T C ACBD6 3'UTR 0.73 TCGA-DX-A8BT-01 1 197125833 197125833 G T ZBTB41 3'UTR 0.63 TCGA-DX-A8BT-01 1 203830841 203830841 C G SNRPE Missense_Mutation p.I18M 0.76 deleterious(0) possibly_damaging(0.809) TCGA-DX-A8BT-01 1 216011349 216011349 G A USH2A Missense_Mutation p.R3119C 0.68 possibly_damaging(0.462) TCGA-DX-A8BT-01 1 222717176 222717176 C A HHIPL2 Missense_Mutation p.G226V 0.24 deleterious(0.02) probably_damaging(0.993) TCGA-DX-A8BT-01 1 247836034 247836034 A T OR13G1 Missense_Mutation p.S104T 0.12 tolerated(0.24) benign(0.255) TCGA-DX-A8BT-01 1 41976281 41976281 A G HIVEP3 Silent p.S2354S 0.23 TCGA-DX-A8BT-01 1 44415575 44415575 C A IPO13 Silent p.R191R 0.23 TCGA-DX-A8BT-01 1 54060355 54060355 G C GLIS1 Missense_Mutation p.S74C 0.43 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-DX-A8BT-01 1 5924040 5924040 G T NPHP4 Silent p.I1350I 0.28 TCGA-DX-A8BT-01 1 59247740 59247741 TC - JUN 3'UTR 0.22 TCGA-DX-A8BT-01 1 85331339 85331339 G A LPAR3 Silent p.I155I 0.23 TCGA-DX-A8BT-01 20 2473378 2473378 T A ZNF343 Missense_Mutation p.M91L 0.28 deleterious(0) possibly_damaging(0.641) TCGA-DX-A8BT-01 21 40795406 40795406 T A LCA5L Missense_Mutation p.E111D 0.20 tolerated(0.19) benign(0.076) TCGA-DX-A8BT-01 22 18022400 18022400 G A CECR2 Silent p.V835V 0.56 TCGA-DX-A8BT-01 22 20079426 20079426 C G DGCR8 Silent p.V513V 0.20 TCGA-DX-A8BT-01 22 21354499 21354499 C A THAP7 Missense_Mutation p.Q200H 0.17 tolerated(0.34) benign(0) TCGA-DX-A8BT-01 2 166168534 166168534 G T SCN2A Splice_Site p.X324_splice 0.18 TCGA-DX-A8BT-01 2 167085227 167085227 G T SCN9A Missense_Mutation p.L1383I 0.68 tolerated(0.57) benign(0.003) TCGA-DX-A8BT-01 2 220115874 220115874 C G TUBA4A Missense_Mutation p.E183Q 0.26 deleterious_low_confidence(0) probably_damaging(1) TCGA-DX-A8BT-01 2 228883837 228883837 T C SPHKAP Missense_Mutation p.E578G 0.32 deleterious(0.04) benign(0.033) TCGA-DX-A8BT-01 2 88427556 88427556 C G FABP1 5'UTR 0.28 TCGA-DX-A8BT-01 3 113850079 113850079 C A DRD3 Missense_Mutation p.V298F 0.23 tolerated(0.11) possibly_damaging(0.899) TCGA-DX-A8BT-01 3 121340749 121340749 C A FBXO40 Missense_Mutation p.P158Q 0.27 tolerated(0.29) benign(0.009) TCGA-DX-A8BT-01 3 138037031 138037031 T A NME9 Nonsense_Mutation p.K54* 0.15 TCGA-DX-A8BT-01 3 138478102 138478102 G C PIK3CB Silent p.G28G 0.46 TCGA-DX-A8BT-01 3 142681480 142681480 G A PAQR9 Silent p.T233T 0.35 TCGA-DX-A8BT-01 3 151107922 151107922 A G MED12L Silent p.P1834P 0.31 TCGA-DX-A8BT-01 3 195509808 195509808 A G MUC4 Silent p.L2881L 0.33 TCGA-DX-A8BT-01 4 175898452 175898452 A G ADAM29 Silent p.G592G 0.24 TCGA-DX-A8BT-01 4 53822220 53822220 T C SCFD2 Intron 0.28 TCGA-DX-A8BT-01 4 57832838 57832838 A G NOA1 Missense_Mutation p.L571S 0.73 tolerated(0.05) possibly_damaging(0.598) TCGA-DX-A8BT-01 4 79832209 79832209 C T BMP2K Silent p.L836L 0.25 TCGA-DX-A8BT-01 5 135188365 135188365 C T SLC25A48 Silent p.C92C 0.53 TCGA-DX-A8BT-01 5 139927317 139927317 C A EIF4EBP3 5'UTR 0.46 TCGA-DX-A8BT-01 5 140348132 140348132 T G PCDHAC2 Missense_Mutation p.V594G 0.24 deleterious(0) possibly_damaging(0.876) TCGA-DX-A8BT-01 5 140594306 140594306 A T PCDHB13 Missense_Mutation p.E204V 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DX-A8BT-01 5 173036274 173036274 C A BOD1 Missense_Mutation p.D176Y 0.18 deleterious(0) probably_damaging(0.953) TCGA-DX-A8BT-01 5 173535955 173535955 T A NSG2 3'UTR 0.12 TCGA-DX-A8BT-01 5 179921643 179921643 C A CNOT6 5'UTR 0.38 TCGA-DX-A8BT-01 5 35700617 35700617 G A SPEF2 Missense_Mutation p.D721N 0.29 deleterious(0.03) benign(0.01) TCGA-DX-A8BT-01 5 35988629 35988629 T A UGT3A1 Missense_Mutation p.D40V 0.09 deleterious(0.02) benign(0.024) TCGA-DX-A8BT-01 5 41005734 41005734 A T MROH2B Missense_Mutation p.W1255R 0.20 tolerated(0.08) benign(0.159) TCGA-DX-A8BT-01 5 52096725 52096725 A T PELO Missense_Mutation p.N166I 0.23 deleterious(0.04) benign(0.276) TCGA-DX-A8BT-01 5 76358970 76358970 A T AGGF1 Nonsense_Mutation p.K680* 0.29 TCGA-DX-A8BT-01 6 109001325 109001325 C G FOXO3 3'UTR 0.28 TCGA-DX-A8BT-01 6 127518107 127518107 G A RSPO3 3'UTR 0.14 TCGA-DX-A8BT-01 6 137323068 137323068 G T IL20RA Missense_Mutation p.T430K 0.37 tolerated(1) benign(0) TCGA-DX-A8BT-01 6 152763261 152763261 G T SYNE1 Missense_Mutation p.S1319R 0.44 benign(0.002) TCGA-DX-A8BT-01 6 25913398 25913398 C G SLC17A2 3'UTR 0.64 TCGA-DX-A8BT-01 6 29080202 29080202 C A OR2J3 Missense_Mutation p.H179N 0.12 tolerated(0.11) probably_damaging(0.999) TCGA-DX-A8BT-01 6 29365079 29365079 G T OR12D2 Silent p.T201T 0.38 TCGA-DX-A8BT-01 6 33248658 33248658 C T WDR46 Missense_Mutation p.A408T 0.19 tolerated(0.47) benign(0.008) TCGA-DX-A8BT-01 6 33703226 33703226 C T IP6K3 Missense_Mutation p.G10R 0.69 tolerated(0.08) benign(0.064) TCGA-DX-A8BT-01 6 39040728 39040728 C T GLP1R Silent p.A200A 0.23 TCGA-DX-A8BT-01 6 41126846 41126846 T C TREM2 Intron 0.28 TCGA-DX-A8BT-01 6 46806867 46806867 G A MEP1A Silent p.R745R 0.09 TCGA-DX-A8BT-01 6 51612752 51612752 G A PKHD1 Missense_Mutation p.P3221L 0.36 deleterious(0.01) probably_damaging(1) TCGA-DX-A8BT-01 7 100679631 100679631 G T MUC17 Missense_Mutation p.S1645I 0.20 probably_damaging(0.988) TCGA-DX-A8BT-01 7 104844171 104844171 G T SRPK2 Missense_Mutation p.P45T 0.32 tolerated(0.48) unknown(0) TCGA-DX-A8BT-01 7 104844172 104844172 T A SRPK2 Silent p.P44P 0.32 TCGA-DX-A8BT-01 7 124386687 124386687 C A GPR37 Silent p.V578V 0.47 TCGA-DX-A8BT-01 7 136701667 136701667 C T CHRM2 3'UTR 0.09 TCGA-DX-A8BT-01 7 138432198 138432198 C T ATP6V0A4 Missense_Mutation p.R431H 0.36 tolerated(0.43) benign(0.005) TCGA-DX-A8BT-01 7 142836823 142836823 C A PIP 3'UTR 0.38 TCGA-DX-A8BT-01 7 149489488 149489488 C A SSPO RNA 0.21 TCGA-DX-A8BT-01 7 27133473 27133473 C T HOXA1 3'UTR 0.18 TCGA-DX-A8BT-01 7 44294196 44294196 C A CAMK2B Missense_Mutation p.G96W 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DX-A8BT-01 7 48312039 48312039 G T ABCA13 Missense_Mutation p.A926S 0.24 benign(0.164) TCGA-DX-A8BT-01 7 87774475 87774475 T A ADAM22 Silent p.I452I 0.17 TCGA-DX-A8BT-01 7 90839514 90839514 C T CDK14 3'UTR 0.21 TCGA-DX-A8BT-01 8 105264492 105264492 T A RIMS2 3'Flank 0.19 TCGA-DX-A8BT-01 8 23700429 23700429 C T STC1 3'UTR 0.11 TCGA-DX-A8BT-01 8 8185770 8185770 G T SGK223 Missense_Mutation p.A841E 0.31 benign(0.323) TCGA-DX-A8BT-01 8 8235474 8235474 G T SGK223 Missense_Mutation p.P149T 0.31 benign(0) TCGA-DX-A8BT-01 9 119770380 119770380 G T ASTN2 Missense_Mutation p.P477T 0.30 deleterious(0) unknown(0) TCGA-DX-A8BT-01 9 125424787 125424787 A T OR1L1 Missense_Mutation p.N265Y 0.52 deleterious(0.01) possibly_damaging(0.699) TCGA-DX-A8BT-01 9 140852096 140852096 C T CACNA1B Silent p.H430H 0.78 TCGA-DX-A8BT-01 9 421060 421060 A T DOCK8 Missense_Mutation p.M1379L 0.28 tolerated(0.23) benign(0.051) TCGA-DX-A8BT-01 X 113965858 113965858 T C HTR2C Missense_Mutation p.I64T 0.35 deleterious(0) possibly_damaging(0.493) TCGA-DX-A8BT-01 X 17752971 17752971 G T NHS 3'UTR 0.20 TCGA-DX-A8BT-01 X 18658840 18658840 C A RS1 3'UTR 0.28 TCGA-DX-A8BT-01 X 34675211 34675211 G C TMEM47 5'UTR 0.25 TCGA-DX-A8BT-01 X 36371692 36371692 T G CXorf30 Missense_Mutation p.I362S 0.16 deleterious(0.05) benign(0.405) TCGA-DX-A8BT-01 X 54263641 54263641 G A WNK3 Missense_Mutation p.S1453F 0.51 deleterious(0.01) benign(0.021) TCGA-DX-A8BT-01 X 55287001 55287001 C A PAGE3 Silent p.L95L 0.25 TCGA-DX-A8BT-01 X 65241769 65241769 G C VSIG4 3'UTR 0.13 TCGA-DX-A8BT-01 X 67937051 67937051 C T STARD8 Intron 0.59 TCGA-DX-A8BT-01 X 71424920 71424920 C A ERCC6L Missense_Mutation p.D1233Y 0.28 deleterious(0) probably_damaging(1) TCGA-DX-A8BT-01 X 71800880 71800880 A C PHKA1 Missense_Mutation p.L1215R 0.13 deleterious(0) probably_damaging(0.99) TCGA-DX-A8BT-01 X 76909587 76909587 C T ATRX Splice_Site p.X1439_splice 0.62 TCGA-DX-A8BT-01 X 84560869 84560869 C A POF1B Missense_Mutation p.E455D 0.22 tolerated(0.06) benign(0.078) TCGA-DX-A8BU-01 10 27335425 27335425 T A ANKRD26 Missense_Mutation p.E614D 0.09 tolerated(0.1) benign(0.098) TCGA-DX-A8BU-01 10 49450384 49450384 G C FRMPD2 Silent p.L129L 0.10 TCGA-DX-A8BU-01 10 51465400 51465400 T A AGAP7 Silent p.I352I 0.05 TCGA-DX-A8BU-01 10 85974527 85974527 C A CDHR1 3'UTR 0.42 TCGA-DX-A8BU-01 11 124294278 124294278 G A OR8B4 Nonsense_Mutation p.R164* 0.67 TCGA-DX-A8BU-01 11 18751262 18751262 A C PTPN5 Missense_Mutation p.V478G 0.13 deleterious(0) probably_damaging(1) TCGA-DX-A8BU-01 11 31086639 31086639 T G DCDC1 Missense_Mutation p.Q787P 0.09 deleterious(0.02) probably_damaging(0.923) TCGA-DX-A8BU-01 11 5624955 5624955 A T TRIM6 Missense_Mutation p.Q166L 0.09 deleterious(0.02) benign(0.205) TCGA-DX-A8BU-01 11 65563510 65563510 A T OVOL1 3'UTR 0.07 TCGA-DX-A8BU-01 11 68773521 68773521 G C MRGPRF Missense_Mutation p.A86G 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-DX-A8BU-01 11 78369072 78369072 G C TENM4 3'UTR 0.11 TCGA-DX-A8BU-01 11 9101004 9101007 CAAA - SCUBE2 Frame_Shift_Del p.C102* 0.38 TCGA-DX-A8BU-01 12 118198926 118198926 C T KSR2 Silent p.P292P 0.15 TCGA-DX-A8BU-01 12 32480725 32480725 G A BICD1 Missense_Mutation p.E446K 0.15 tolerated(0.13) probably_damaging(0.992) TCGA-DX-A8BU-01 12 67663558 67663558 G C CAND1 Missense_Mutation p.D21H 0.22 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BU-01 12 92818892 92818892 T C CLLU1 3'UTR 0.38 TCGA-DX-A8BU-01 12 95422248 95422248 T C NR2C1 Silent p.L482L 0.17 TCGA-DX-A8BU-01 12 96900705 96900705 G A C12orf55 Splice_Site p.X190_splice 0.37 TCGA-DX-A8BU-01 13 24449010 24449010 C A MIPEP Missense_Mutation p.S193I 0.27 deleterious(0) probably_damaging(0.985) TCGA-DX-A8BU-01 13 77629706 77629730 TAGCACACATAATATGCATATCTAT - MYCBP2 Frame_Shift_Del p.N4499Tfs*83 0.17 TCGA-DX-A8BU-01 13 78337903 78337903 G A SLAIN1 3'Flank 0.49 TCGA-DX-A8BU-01 14 102800911 102800911 G C ZNF839 Silent p.R479R 0.23 TCGA-DX-A8BU-01 15 43893135 43893135 C T STRC Silent p.A1593A 0.05 TCGA-DX-A8BU-01 15 89010807 89010807 G T MRPS11 5'UTR 0.34 TCGA-DX-A8BU-01 15 91522418 91522418 T C PRC1 Silent p.E359E 0.23 TCGA-DX-A8BU-01 15 96881353 96881353 G A NR2F2 3'UTR 0.10 TCGA-DX-A8BU-01 16 16180806 16180806 C A ABCC1 Silent p.I806I 0.34 TCGA-DX-A8BU-01 16 57116575 57116575 G T NLRC5 3'UTR 1.00 TCGA-DX-A8BU-01 16 72992883 72992883 C G ZFHX3 Missense_Mutation p.E388Q 0.17 possibly_damaging(0.676) TCGA-DX-A8BU-01 16 74972095 74972095 C G WDR59 Missense_Mutation p.D202H 0.05 tolerated(0.13) possibly_damaging(0.676) TCGA-DX-A8BU-01 16 76482698 76482698 C A CNTNAP4 Silent p.V234V 0.83 TCGA-DX-A8BU-01 17 10309387 10309387 C T MYH8 Silent p.R801R 0.82 TCGA-DX-A8BU-01 17 33520711 33520711 T A SLC35G3 Missense_Mutation p.R206W 0.08 deleterious(0) benign(0.008) TCGA-DX-A8BU-01 17 4726572 4726572 C T PLD2 3'UTR 0.33 TCGA-DX-A8BU-01 17 56232674 56232674 C T OR4D1 Missense_Mutation p.R54W 0.19 deleterious(0.02) benign(0.017) TCGA-DX-A8BU-01 17 61772237 61772237 G C MAP3K3 3'UTR 0.69 TCGA-DX-A8BU-01 17 7324756 7324756 C G SPEM1 Missense_Mutation p.H254Q 0.06 deleterious(0.04) benign(0.006) TCGA-DX-A8BU-01 17 7577514 7577515 - TA TP53 Frame_Shift_Ins p.T256Ifs*90 0.49 TCGA-DX-A8BU-01 17 8222221 8222221 C T ARHGEF15 Missense_Mutation p.P676S 0.10 deleterious(0.03) possibly_damaging(0.771) TCGA-DX-A8BU-01 18 14791454 14791454 C A ANKRD30B Missense_Mutation p.Q597K 0.06 deleterious(0.01) possibly_damaging(0.879) TCGA-DX-A8BU-01 18 21739532 21739532 C T CABYR Missense_Mutation p.P213L 0.91 tolerated(0.14) probably_damaging(0.998) TCGA-DX-A8BU-01 18 44057439 44057439 A G LOXHD1 Intron 0.58 TCGA-DX-A8BU-01 19 15052832 15052832 T G OR7C2 Missense_Mutation p.F178V 0.05 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-DX-A8BU-01 19 19746001 19746001 G A GMIP Missense_Mutation p.R528C 0.36 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BU-01 19 37905235 37905235 C T ZNF569 Missense_Mutation p.E109K 0.11 tolerated(0.98) benign(0.001) TCGA-DX-A8BU-01 19 45411986 45411986 G A APOE Missense_Mutation p.G145S 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-DX-A8BU-01 19 49238636 49238636 A C RASIP1 Silent p.L332L 0.04 TCGA-DX-A8BU-01 19 52130427 52130427 A T SIGLEC5 Missense_Mutation p.C453S 0.49 tolerated(0.07) benign(0.184) TCGA-DX-A8BU-01 19 6147680 6147680 G C ACSBG2 Missense_Mutation p.L97F 0.10 tolerated(1) benign(0.094) TCGA-DX-A8BU-01 19 6926553 6926553 G A EMR1 Silent p.P721P 0.05 TCGA-DX-A8BU-01 19 8191447 8191447 C T FBN3 Missense_Mutation p.R820H 0.07 deleterious(0.05) benign(0.053) TCGA-DX-A8BU-01 19 9047336 9047336 G C MUC16 Missense_Mutation p.T11432R 0.10 possibly_damaging(0.506) TCGA-DX-A8BU-01 1 152084915 152084915 A G TCHH Silent p.L260L 0.56 TCGA-DX-A8BU-01 1 157716506 157716506 C T FCRL2 3'UTR 0.11 TCGA-DX-A8BU-01 1 158906932 158906932 C A PYHIN1 Missense_Mutation p.L78I 0.14 tolerated(0.28) benign(0.224) TCGA-DX-A8BU-01 1 202702917 202702917 A G KDM5B Missense_Mutation p.V1174A 0.17 tolerated(0.75) benign(0.001) TCGA-DX-A8BU-01 1 26228163 26228163 G C STMN1 Missense_Mutation p.A66G 0.16 deleterious(0) possibly_damaging(0.767) TCGA-DX-A8BU-01 1 52254982 52254982 T C NRD1 Missense_Mutation p.I1196V 0.53 tolerated(0.49) benign(0.002) TCGA-DX-A8BU-01 20 17339055 17339055 C T PCSK2 Silent p.N122N 0.15 TCGA-DX-A8BU-01 20 417030 417030 G T TBC1D20 3'UTR 0.18 TCGA-DX-A8BU-01 20 45084777 45084777 A G ZNF663P RNA 0.24 TCGA-DX-A8BU-01 20 746375 746375 C A SLC52A3 Missense_Mutation p.G15V 0.28 deleterious(0) probably_damaging(0.932) TCGA-DX-A8BU-01 21 39673084 39673084 T C KCNJ15 3'UTR 0.16 TCGA-DX-A8BU-01 21 44590745 44590745 G A CRYAA Missense_Mutation p.R103H 0.25 deleterious(0) probably_damaging(0.911) TCGA-DX-A8BU-01 22 50528904 50528904 C A MOV10L1 Intron 0.28 TCGA-DX-A8BU-01 22 51183369 51183369 C T ACR Missense_Mutation p.P334S 0.17 tolerated(0.08) benign(0.421) TCGA-DX-A8BU-01 2 113959055 113959055 G A PSD4 3'UTR 0.25 TCGA-DX-A8BU-01 2 136575391 136575391 G T LCT Missense_Mutation p.S409R 0.41 deleterious(0) probably_damaging(0.965) TCGA-DX-A8BU-01 2 143798011 143798011 G A KYNU Silent p.A352A 0.18 TCGA-DX-A8BU-01 2 152582033 152582033 T G NEB Silent p.P112P 0.43 TCGA-DX-A8BU-01 2 159651908 159651908 G C DAPL1 Silent p.L8L 0.18 TCGA-DX-A8BU-01 2 166846936 166846937 - T SCN1A 3'UTR 0.17 TCGA-DX-A8BU-01 2 203977921 203977921 T C NBEAL1 Missense_Mutation p.S767P 0.19 tolerated(0.39) probably_damaging(0.993) TCGA-DX-A8BU-01 2 208631288 208631288 A T FZD5 3'UTR 0.12 TCGA-DX-A8BU-01 3 113729865 113729865 T - KIAA1407 Frame_Shift_Del p.K389Nfs*30 0.20 TCGA-DX-A8BU-01 3 123457850 123457850 G T MYLK Missense_Mutation p.P161Q 0.29 deleterious(0) possibly_damaging(0.476) TCGA-DX-A8BU-01 3 123457851 123457851 G T MYLK Missense_Mutation p.P161T 0.27 deleterious(0) benign(0.069) TCGA-DX-A8BU-01 3 124209630 124209630 C T KALRN Missense_Mutation p.R1494W 0.11 deleterious(0) probably_damaging(0.996) TCGA-DX-A8BU-01 3 127642302 127642302 G C KBTBD12 Missense_Mutation p.C133S 0.07 deleterious(0.03) probably_damaging(1) TCGA-DX-A8BU-01 3 140281713 140281713 G A CLSTN2 Missense_Mutation p.R758H 0.17 tolerated(1) benign(0.001) TCGA-DX-A8BU-01 3 191860040 191860040 A T FGF12 3'Flank 0.09 TCGA-DX-A8BU-01 3 38135096 38135096 G T DLEC1 Missense_Mutation p.G586V 0.21 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BU-01 3 98600425 98600425 A G DCBLD2 Missense_Mutation p.L131S 0.06 deleterious(0) probably_damaging(0.993) TCGA-DX-A8BU-01 4 100571146 100571146 G C RP11-766F14.2 Missense_Mutation p.H1554D 0.22 tolerated(0.2) benign(0.114) TCGA-DX-A8BU-01 4 103500090 103500090 G A NFKB1 Missense_Mutation p.M208I 0.33 tolerated(0.21) benign(0.075) TCGA-DX-A8BU-01 4 154547353 154547353 T C KIAA0922 Missense_Mutation p.L1367P 0.47 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BU-01 4 20620477 20620477 C G SLIT2 Missense_Mutation p.R1479G 0.20 tolerated(0.33) probably_damaging(0.992) TCGA-DX-A8BU-01 4 25783928 25783928 G A SEL1L3 Missense_Mutation p.A798V 0.27 deleterious(0) probably_damaging(0.995) TCGA-DX-A8BU-01 4 2949306 2949306 G A NOP14 Silent p.G482G 0.08 TCGA-DX-A8BU-01 4 73414431 73414431 C A ADAMTS3 Missense_Mutation p.D90Y 0.28 deleterious(0) possibly_damaging(0.739) TCGA-DX-A8BU-01 4 90857734 90857734 A T MMRN1 Missense_Mutation p.E968V 0.58 deleterious(0) possibly_damaging(0.698) TCGA-DX-A8BU-01 5 127681117 127681117 G A FBN2 Missense_Mutation p.T1050M 0.44 deleterious(0.05) possibly_damaging(0.594) TCGA-DX-A8BU-01 5 137045465 137045465 C T KLHL3 Missense_Mutation p.S72N 0.51 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BU-01 5 140085799 140085799 T C ZMAT2 3'UTR 0.07 TCGA-DX-A8BU-01 5 140202746 140202746 C T PCDHA5 Silent p.F462F 0.57 TCGA-DX-A8BU-01 5 140242769 140242769 C T AC005609.1 Silent p.T69T 0.19 TCGA-DX-A8BU-01 5 151231024 151231024 C T GLRA1 Missense_Mutation p.R280H 0.38 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BU-01 5 154287187 154287187 G A GEMIN5 Missense_Mutation p.R787W 0.38 deleterious(0.02) possibly_damaging(0.462) TCGA-DX-A8BU-01 5 74100335 74100335 T A FAM169A Missense_Mutation p.S299C 0.11 deleterious(0.05) possibly_damaging(0.753) TCGA-DX-A8BU-01 6 158517399 158517399 G C SYNJ2 3'UTR 0.16 TCGA-DX-A8BU-01 6 161470949 161470949 C T MAP3K4 Silent p.L549L 0.45 TCGA-DX-A8BU-01 6 167797661 167797661 C T TCP10 Intron 0.48 TCGA-DX-A8BU-01 6 27791912 27791912 C T HIST1H4J Missense_Mutation p.R4C 0.07 tolerated_low_confidence(0.06) benign(0.012) TCGA-DX-A8BU-01 6 32261059 32261059 C A C6orf10 Missense_Mutation p.S464I 0.05 tolerated(0.13) possibly_damaging(0.857) TCGA-DX-A8BU-01 6 33424502 33424502 T C ZBTB9 3'UTR 0.08 TCGA-DX-A8BU-01 6 36462164 36462164 A G STK38 3'UTR 0.25 TCGA-DX-A8BU-01 7 105660837 105660837 G A CDHR3 Missense_Mutation p.E558K 0.09 tolerated(0.09) benign(0.223) TCGA-DX-A8BU-01 7 127950921 127950921 A - RBM28 Frame_Shift_Del p.Y737Ifs*53 0.15 TCGA-DX-A8BU-01 7 153749871 153749871 A G DPP6 5'UTR 0.18 TCGA-DX-A8BU-01 7 44044444 44044444 C T SPDYE1 Intron 0.15 TCGA-DX-A8BU-01 7 47454731 47454731 C G TNS3 Missense_Mutation p.V183L 0.14 deleterious(0.02) possibly_damaging(0.866) TCGA-DX-A8BU-01 7 91714957 91714986 TAAAGGATTTAATTACAAAGATGCAACTGC AAATCCTTT AKAP9 Nonsense_Mutation p.L2994_Q3004delinsQIL* 0.33 TCGA-DX-A8BU-01 7 98993909 98993909 G C PDAP1 3'UTR 0.06 TCGA-DX-A8BU-01 8 145677807 145677807 C T CYHR1 Missense_Mutation p.R211H 0.07 tolerated(0.11) benign(0.002) TCGA-DX-A8BU-01 8 15095243 15095243 G T SGCZ 5'UTR 0.23 TCGA-DX-A8BU-01 8 17088195 17088195 T C CNOT7 3'UTR 0.21 TCGA-DX-A8BU-01 8 24170916 24170916 G T ADAM28 Missense_Mutation p.Q133H 0.19 tolerated(0.18) benign(0.056) TCGA-DX-A8BU-01 8 27288893 27288893 G T PTK2B Intron 0.44 TCGA-DX-A8BU-01 8 39624422 39624422 A G ADAM2 Silent p.C484C 0.34 TCGA-DX-A8BU-01 8 61192355 61192355 T C CA8 Missense_Mutation p.D62G 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BU-01 9 127316690 127316690 T A NR6A1 Missense_Mutation p.N101I 0.14 deleterious(0) possibly_damaging(0.89) TCGA-DX-A8BU-01 9 14313879 14313879 C T NFIB 5'Flank 0.14 TCGA-DX-A8BU-01 9 34621478 34621478 G A ARID3C Missense_Mutation p.P406S 0.10 deleterious_low_confidence(0.02) unknown(0) TCGA-DX-A8BU-01 9 39085765 39085765 G A CNTNAP3 Missense_Mutation p.A1137V 0.51 tolerated(0.08) probably_damaging(0.976) TCGA-DX-A8BU-01 X 2876419 2876419 T C ARSE Silent p.P27P 0.26 TCGA-DX-A8BU-01 X 49645301 49645301 C T USP27X Missense_Mutation p.R131W 0.10 deleterious(0) possibly_damaging(0.849) TCGA-DX-A8BU-01 X 55248256 55248256 G A PAGE5 Silent p.Q66Q 0.96 TCGA-DX-A8BU-01 X 76937049 76937053 TAAAT - ATRX Frame_Shift_Del p.N1232Sfs*15 0.88 TCGA-DX-A8BV-01 10 70932292 70932292 A G VPS26A 3'UTR 0.14 TCGA-DX-A8BV-01 11 130003584 130003584 A C APLP2 Missense_Mutation p.K549Q 0.32 tolerated(0.12) possibly_damaging(0.756) TCGA-DX-A8BV-01 11 47460316 47460316 T C RAPSN Missense_Mutation p.Q378R 0.06 tolerated(0.14) benign(0.284) TCGA-DX-A8BV-01 11 5969152 5969152 C T OR56A3 Silent p.S192S 0.30 TCGA-DX-A8BV-01 11 64880999 64880999 T A TM7SF2 Missense_Mutation p.L179H 0.08 deleterious(0) probably_damaging(1) TCGA-DX-A8BV-01 11 68115452 68115452 G T LRP5 Missense_Mutation p.V77L 0.18 tolerated(0.06) benign(0.015) TCGA-DX-A8BV-01 11 72404505 72404505 G A ARAP1 Silent p.V1273V 0.20 TCGA-DX-A8BV-01 12 10588425 10588425 C T KLRC2 Missense_Mutation p.G54E 0.16 tolerated(0.2) benign(0.037) TCGA-DX-A8BV-01 12 114385209 114385209 G A RBM19 Missense_Mutation p.A446V 0.07 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BV-01 12 121605337 121605337 G A P2RX7 Missense_Mutation p.R264H 0.16 tolerated(0.08) possibly_damaging(0.631) TCGA-DX-A8BV-01 12 125436983 125436983 G A DHX37 Silent p.S943S 0.32 TCGA-DX-A8BV-01 12 130991258 130991258 C T RIMBP2 5'UTR 0.17 TCGA-DX-A8BV-01 12 5153524 5153524 C A KCNA5 Missense_Mutation p.P71T 0.21 tolerated_low_confidence(0.73) unknown(0) TCGA-DX-A8BV-01 12 5153679 5153679 C T KCNA5 Silent p.V122V 0.20 TCGA-DX-A8BV-01 14 104195282 104195282 A G ZFYVE21 Silent p.K132K 0.61 TCGA-DX-A8BV-01 14 105476992 105476992 A G CDCA4 3'UTR 0.47 TCGA-DX-A8BV-01 14 106331618 106331618 T A IGHJ1 Silent p.S17S 0.10 TCGA-DX-A8BV-01 14 107179126 107179126 G T IGHV2-70 Silent p.V17V 0.66 TCGA-DX-A8BV-01 15 23890932 23890932 G C MAGEL2 Missense_Mutation p.P50R 0.25 deleterious_low_confidence(0.02) benign(0.209) TCGA-DX-A8BV-01 15 30396080 30396080 C A ULK4P3 RNA 0.13 TCGA-DX-A8BV-01 15 42106769 42106769 G A MAPKBP1 Silent p.A340A 0.21 TCGA-DX-A8BV-01 15 59955820 59955820 T C BNIP2 3'UTR 0.48 TCGA-DX-A8BV-01 16 1907813 1907813 A G MEIOB Missense_Mutation p.Y151H 0.62 deleterious(0) possibly_damaging(0.885) TCGA-DX-A8BV-01 16 3022637 3022637 G - PKMYT1 3'Flank 0.12 TCGA-DX-A8BV-01 16 3070446 3070446 G A TNFRSF12A Silent p.G16G 0.18 TCGA-DX-A8BV-01 17 26685947 26685947 C G TMEM199 Missense_Mutation p.L74V 0.23 tolerated(0.48) benign(0.005) TCGA-DX-A8BV-01 17 34324877 34324877 G A CCL15 Missense_Mutation p.R90W 0.16 deleterious(0) probably_damaging(0.959) TCGA-DX-A8BV-01 17 36700164 36700164 G A SRCIN1 Missense_Mutation p.P1104L 0.29 deleterious(0.02) benign(0.006) TCGA-DX-A8BV-01 17 39023145 39023145 C T KRT12 Silent p.G98G 0.36 TCGA-DX-A8BV-01 17 74387633 74387633 C A UBE2O Silent p.L1090L 0.08 TCGA-DX-A8BV-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.68 TCGA-DX-A8BV-01 19 11276760 11276760 C A KANK2 3'UTR 0.10 TCGA-DX-A8BV-01 19 11276761 11276761 C A KANK2 3'UTR 0.10 TCGA-DX-A8BV-01 19 13205910 13205910 G A NFIX 3'UTR 0.11 TCGA-DX-A8BV-01 19 42224881 42224881 C G CEACAM5 Missense_Mutation p.S604C 0.13 tolerated(0.07) possibly_damaging(0.896) TCGA-DX-A8BV-01 19 49674847 49674847 G A TRPM4 Missense_Mutation p.A291T 0.06 deleterious(0) possibly_damaging(0.781) TCGA-DX-A8BV-01 19 52090690 52090690 G T ZNF175 Missense_Mutation p.G369V 0.15 deleterious(0.01) probably_damaging(1) TCGA-DX-A8BV-01 19 54758267 54758267 C A LILRB5 Missense_Mutation p.D423Y 0.16 deleterious(0.05) possibly_damaging(0.521) TCGA-DX-A8BV-01 1 155147426 155147426 G T TRIM46 Intron 0.21 TCGA-DX-A8BV-01 1 168216218 168216218 A G SFT2D2 3'UTR 0.08 TCGA-DX-A8BV-01 1 183212350 183212350 C T LAMC2 Nonsense_Mutation p.Q1133* 0.30 TCGA-DX-A8BV-01 1 184588751 184588751 A G C1orf21 3'UTR 0.40 TCGA-DX-A8BV-01 1 186089277 186089277 G A HMCN1 Missense_Mutation p.V4077I 0.39 probably_damaging(0.943) TCGA-DX-A8BV-01 1 1957077 1957077 A C GABRD Missense_Mutation p.T124P 0.24 deleterious(0.02) probably_damaging(1) TCGA-DX-A8BV-01 1 247902370 247902370 G C OR14K1 Missense_Mutation p.A152P 0.25 deleterious(0) possibly_damaging(0.622) TCGA-DX-A8BV-01 1 46598414 46598414 G A PIK3R3 5'Flank 0.12 TCGA-DX-A8BV-01 1 59248284 59248284 G T JUN Silent p.G153G 0.18 TCGA-DX-A8BV-01 1 75038857 75038857 T A C1orf173 Missense_Mutation p.E846V 0.12 deleterious(0.01) benign(0.382) TCGA-DX-A8BV-01 20 1456846 1456846 A C SIRPB2 Missense_Mutation p.M332R 0.20 deleterious_low_confidence(0.02) benign(0.029) TCGA-DX-A8BV-01 20 19970901 19970901 A G RIN2 Missense_Mutation p.M721V 0.20 tolerated(0.49) benign(0.089) TCGA-DX-A8BV-01 20 30917948 30917948 A G KIF3B Missense_Mutation p.E658G 0.09 deleterious(0) benign(0.022) TCGA-DX-A8BV-01 21 16333666 16333666 C T NRIP1 3'UTR 0.13 TCGA-DX-A8BV-01 21 16334216 16334216 C T NRIP1 3'UTR 0.28 TCGA-DX-A8BV-01 21 16335210 16335210 C T NRIP1 3'UTR 0.13 TCGA-DX-A8BV-01 21 16335437 16335437 C T NRIP1 3'UTR 0.13 TCGA-DX-A8BV-01 21 16337345 16337345 C G NRIP1 Missense_Mutation p.D1057H 0.24 deleterious(0) probably_damaging(0.934) TCGA-DX-A8BV-01 21 16338470 16338470 C T NRIP1 Missense_Mutation p.E682K 0.30 deleterious(0.01) probably_damaging(0.994) TCGA-DX-A8BV-01 21 43243714 43243714 C T PRDM15 Missense_Mutation p.R940H 0.12 deleterious(0.02) probably_damaging(0.973) TCGA-DX-A8BV-01 21 44949728 44949728 C T HSF2BP Missense_Mutation p.R304H 0.19 tolerated(0.18) probably_damaging(0.984) TCGA-DX-A8BV-01 22 19842009 19842009 T C C22orf29 5'UTR 0.05 TCGA-DX-A8BV-01 22 27026429 27026429 G T CRYBA4 Missense_Mutation p.S190I 0.17 deleterious(0) probably_damaging(1) TCGA-DX-A8BV-01 2 118867134 118867134 G T INSIG2 3'UTR 0.13 TCGA-DX-A8BV-01 2 125547486 125547486 G A CNTNAP5 Silent p.T919T 0.17 TCGA-DX-A8BV-01 2 166223861 166223861 C A SCN2A Missense_Mutation p.L1219M 0.11 deleterious(0.01) probably_damaging(1) TCGA-DX-A8BV-01 2 179463701 179463701 T C TTN Silent p.G18912G 0.12 TCGA-DX-A8BV-01 2 209110099 209110099 G C IDH1 Missense_Mutation p.T155S 0.48 tolerated_low_confidence(0.26) benign(0.002) TCGA-DX-A8BV-01 2 5838843 5838843 T C SOX11 3'UTR 0.17 TCGA-DX-A8BV-01 2 89512913 89512913 C T IGKV1-27 Missense_Mutation p.A116T 0.26 tolerated_low_confidence(0.43) benign(0.001) TCGA-DX-A8BV-01 3 10369827 10369827 A T ATP2B2 3'UTR 0.19 TCGA-DX-A8BV-01 3 125648532 125648532 C T ALG1L Intron 0.30 TCGA-DX-A8BV-01 3 13378298 13378298 G A NUP210 Missense_Mutation p.R1225W 0.07 deleterious(0.01) benign(0.029) TCGA-DX-A8BV-01 3 149485707 149485707 C T ANKUB1 Missense_Mutation p.A248T 0.11 deleterious(0) probably_damaging(0.982) TCGA-DX-A8BV-01 3 159614571 159614571 C A IQCJ-SCHIP1 3'UTR 0.22 TCGA-DX-A8BV-01 3 197509833 197509833 A T FYTTD1 3'UTR 0.45 TCGA-DX-A8BV-01 3 25636129 25636129 C G RARB Missense_Mutation p.I370M 0.39 tolerated(1) benign(0.03) TCGA-DX-A8BV-01 4 135121102 135121102 C A PABPC4L Missense_Mutation p.G416V 0.37 tolerated(0.06) probably_damaging(1) TCGA-DX-A8BV-01 4 147227160 147227160 A G SLC10A7 Missense_Mutation p.L158P 0.12 deleterious(0) probably_damaging(0.986) TCGA-DX-A8BV-01 4 619403 619403 A T PDE6B 5'UTR 0.45 TCGA-DX-A8BV-01 4 70715166 70715166 A T SULT1E1 Missense_Mutation p.M162K 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-DX-A8BV-01 4 72897544 72897544 C A NPFFR2 5'UTR 0.16 TCGA-DX-A8BV-01 5 131298244 131298244 T C ACSL6 Missense_Mutation p.H614R 0.10 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BV-01 5 140256852 140256852 G A PCDHA12 Missense_Mutation p.A599T 0.10 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-DX-A8BV-01 5 140710512 140710512 G A PCDHGA1 Silent p.A87A 0.16 TCGA-DX-A8BV-01 5 140736262 140736262 G A PCDHGA4 Missense_Mutation p.A499T 0.42 tolerated_low_confidence(0.14) benign(0.32) TCGA-DX-A8BV-01 5 161324550 161324550 T C GABRA1 3'UTR 0.44 TCGA-DX-A8BV-01 5 173026 173026 A G PLEKHG4B Silent p.E999E 0.07 TCGA-DX-A8BV-01 5 32379260 32379260 G A ZFR Silent p.L932L 0.23 TCGA-DX-A8BV-01 5 39342252 39342252 C G C9 Missense_Mutation p.D42H 0.09 deleterious(0.02) benign(0.437) TCGA-DX-A8BV-01 5 41313778 41313778 A T PLCXD3 Missense_Mutation p.F303I 0.26 deleterious(0) probably_damaging(0.992) TCGA-DX-A8BV-01 6 29407999 29407999 G C OR10C1 Missense_Mutation p.E69D 0.11 tolerated(0.15) benign(0.003) TCGA-DX-A8BV-01 6 43106625 43106625 C T PTK7 Silent p.L431L 0.15 TCGA-DX-A8BV-01 6 62390750 62390750 A T KHDRBS2 3'UTR 0.15 TCGA-DX-A8BV-01 6 90576055 90576055 G T CASP8AP2 RNA 0.14 TCGA-DX-A8BV-01 7 150772280 150772280 G C SLC4A2 Intron 0.34 TCGA-DX-A8BV-01 7 23509681 23509681 C A IGF2BP3 Missense_Mutation p.D17Y 0.11 deleterious(0) probably_damaging(0.986) TCGA-DX-A8BV-01 8 142161778 142161778 C T DENND3 Silent p.L226L 0.07 TCGA-DX-A8BV-01 8 37602430 37602430 A G ERLIN2 Intron 0.33 TCGA-DX-A8BV-01 8 9639125 9639125 T A TNKS 3'UTR 0.14 TCGA-DX-A8BV-01 8 99442238 99442238 T C KCNS2 3'UTR 0.24 TCGA-DX-A8BV-01 9 136573521 136573521 G C SARDH Missense_Mutation p.P453R 0.17 tolerated(0.6) benign(0) TCGA-DX-A8BV-01 9 21141802 21141802 A G IFNW1 5'UTR 0.35 TCGA-DX-A8BV-01 9 90500141 90500141 C A SPATA31E1 Missense_Mutation p.Q247K 0.12 tolerated(0.73) benign(0.027) TCGA-DX-A8BV-01 9 95599683 95599683 C T ANKRD19P RNA 0.17 TCGA-DX-A8BV-01 X 105922093 105922093 T A CXorf57 3'UTR 0.45 TCGA-DX-A8BV-01 X 105937073 105937073 G T RNF128 5'UTR 0.18 TCGA-DX-A8BV-01 X 76937766 76937769 TTTC - ATRX Frame_Shift_Del p.K993Nfs*9 0.55 TCGA-DX-A8BX-01 10 48414171 48414171 G A GDF2 Missense_Mutation p.H233Y 0.20 tolerated(0.18) possibly_damaging(0.638) TCGA-DX-A8BX-01 10 98031113 98031113 A G BLNK Silent p.L15L 0.28 TCGA-DX-A8BX-01 11 33569421 33569421 C T KIAA1549L Missense_Mutation p.A869V 0.33 tolerated(0.07) probably_damaging(0.981) TCGA-DX-A8BX-01 11 5153475 5153475 C T OR52A5 Missense_Mutation p.R133K 0.22 deleterious(0.01) benign(0.333) TCGA-DX-A8BX-01 11 93468208 93468208 T A KIAA1731 3'Flank 0.35 TCGA-DX-A8BX-01 12 110466421 110466421 G C ANKRD13A Silent p.P350P 0.30 TCGA-DX-A8BX-01 12 115109883 115109883 C T TBX3 Silent p.A665A 0.14 TCGA-DX-A8BX-01 12 119943003 119943003 G A CCDC60 Missense_Mutation p.G260S 0.16 tolerated(0.4) possibly_damaging(0.465) TCGA-DX-A8BX-01 12 124218541 124218541 G A ATP6V0A2 Silent p.K239K 0.08 TCGA-DX-A8BX-01 12 21590706 21590715 GGTGGTCGGC - PYROXD1 Frame_Shift_Del p.V15Afs*24 0.37 TCGA-DX-A8BX-01 12 22670939 22670939 C G C2CD5 Missense_Mutation p.L311F 0.40 deleterious(0.01) benign(0.094) TCGA-DX-A8BX-01 12 4488550 4488550 G A FGF23 Nonsense_Mutation p.Q67* 0.29 TCGA-DX-A8BX-01 12 464396 464397 TC - KDM5A Frame_Shift_Del p.R266Qfs*10 0.21 TCGA-DX-A8BX-01 12 51279444 51279444 A T TMPRSS12 Intron 0.40 TCGA-DX-A8BX-01 12 52145167 52145167 G A SCN8A Silent p.P720P 0.19 TCGA-DX-A8BX-01 12 56355132 56355132 C T PMEL Silent p.Q101Q 0.20 TCGA-DX-A8BX-01 12 56847521 56847521 C T MIP Missense_Mutation p.V127M 0.33 tolerated(0.11) benign(0.011) TCGA-DX-A8BX-01 12 77246804 77246804 A T ZDHHC17 3'UTR 0.20 TCGA-DX-A8BX-01 13 101936334 101936334 C A NALCN Missense_Mutation p.V362L 0.35 deleterious(0.01) possibly_damaging(0.762) TCGA-DX-A8BX-01 13 49925039 49925039 G A CAB39L Silent p.A135A 0.28 TCGA-DX-A8BX-01 13 96212707 96212707 G A CLDN10 Missense_Mutation p.V152I 0.35 tolerated(0.47) benign(0.005) TCGA-DX-A8BX-01 14 102504807 102504807 G C DYNC1H1 Missense_Mutation p.S3640T 0.22 benign(0.139) TCGA-DX-A8BX-01 14 102505585 102505585 C G DYNC1H1 Silent p.L3818L 0.25 TCGA-DX-A8BX-01 14 102505775 102505775 C G DYNC1H1 Silent p.L3829L 0.22 TCGA-DX-A8BX-01 14 102505858 102505858 C G DYNC1H1 Missense_Mutation p.S3857C 0.41 benign(0.353) TCGA-DX-A8BX-01 14 24538444 24538444 C T LRRC16B Missense_Mutation p.P1361S 0.43 deleterious_low_confidence(0.03) unknown(0) TCGA-DX-A8BX-01 14 75409189 75409189 G A PGF 3'UTR 0.29 TCGA-DX-A8BX-01 15 25287126 25287126 G T SNORD109A RNA 0.29 TCGA-DX-A8BX-01 15 29560752 29560752 G C NDNL2 3'UTR 0.36 TCGA-DX-A8BX-01 15 54919333 54919333 A G UNC13C 3'UTR 0.25 TCGA-DX-A8BX-01 15 56385158 56385158 G A RFX7 3'UTR 0.14 TCGA-DX-A8BX-01 15 85327615 85327615 C T ZNF592 Missense_Mutation p.P570L 0.25 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BX-01 16 3350579 3350579 C A TIGD7 Missense_Mutation p.L12F 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BX-01 16 48576232 48576232 G A N4BP1 3'UTR 0.20 TCGA-DX-A8BX-01 16 65016106 65016106 G T CDH11 Missense_Mutation p.D366E 0.30 deleterious(0) possibly_damaging(0.708) TCGA-DX-A8BX-01 17 29645499 29645499 C G EVI2A Missense_Mutation p.R201T 0.38 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BX-01 17 3571840 3571840 C T TAX1BP3 5'UTR 0.24 TCGA-DX-A8BX-01 17 42978925 42978925 C T CCDC103 Missense_Mutation p.R61W 0.28 deleterious(0) possibly_damaging(0.891) TCGA-DX-A8BX-01 17 47903406 47903406 C T KAT7 Missense_Mutation p.R509C 0.38 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BX-01 17 47903425 47903426 - GC KAT7 Frame_Shift_Ins p.L516Rfs*3 0.31 TCGA-DX-A8BX-01 17 62500099 62500102 ACAG - DDX5 Splice_Site p.X147_splice 0.35 TCGA-DX-A8BX-01 17 68175472 68175472 T C KCNJ2 3'UTR 0.39 TCGA-DX-A8BX-01 17 708474 708474 G A NXN Silent p.L278L 0.44 TCGA-DX-A8BX-01 17 74731867 74731867 C T SRSF2 3'UTR 0.12 TCGA-DX-A8BX-01 18 51056781 51056781 C T DCC Intron 0.26 TCGA-DX-A8BX-01 18 54424260 54424260 G C WDR7 Missense_Mutation p.L812F 0.16 deleterious(0) probably_damaging(0.999) TCGA-DX-A8BX-01 19 36014339 36014339 C T SBSN 3'UTR 0.32 TCGA-DX-A8BX-01 19 41748828 41748828 G C AXL Missense_Mutation p.W451C 0.20 tolerated(0.09) probably_damaging(0.99) TCGA-DX-A8BX-01 19 45377710 45377710 C T PVRL2 Silent p.R339R 0.23 TCGA-DX-A8BX-01 19 49253581 49253581 C T FUT1 Missense_Mutation p.G320R 0.07 deleterious(0.02) probably_damaging(1) TCGA-DX-A8BX-01 19 50156724 50156724 G A SCAF1 Silent p.E1026E 0.07 TCGA-DX-A8BX-01 19 53770511 53770511 G T VN1R4 Silent p.I136I 0.22 TCGA-DX-A8BX-01 19 55045167 55045167 G A KIR3DX1 Missense_Mutation p.G96E 0.18 deleterious(0.02) possibly_damaging(0.471) TCGA-DX-A8BX-01 19 758081 758081 G A MISP Missense_Mutation p.D379N 0.21 tolerated(0.17) benign(0.205) TCGA-DX-A8BX-01 1 112255737 112255737 T - RAP1A 3'UTR 0.24 TCGA-DX-A8BX-01 1 158648297 158648297 G C SPTA1 Missense_Mutation p.Q236E 0.30 tolerated(0.35) benign(0.002) TCGA-DX-A8BX-01 1 18809505 18809505 G A KLHDC7A Missense_Mutation p.G677D 0.14 deleterious(0.03) benign(0.384) TCGA-DX-A8BX-01 1 205768194 205768194 G A SLC41A1 Silent p.I196I 0.17 TCGA-DX-A8BX-01 1 247614903 247614903 C T OR2B11 Missense_Mutation p.V128M 0.38 deleterious(0.04) benign(0.032) TCGA-DX-A8BX-01 1 65871755 65871755 C T DNAJC6 Silent p.N810N 0.31 TCGA-DX-A8BX-01 20 24944285 24944285 G A APMAP 3'UTR 0.17 TCGA-DX-A8BX-01 20 30785316 30785316 G A PLAGL2 Missense_Mutation p.R144C 0.07 deleterious(0) probably_damaging(0.982) TCGA-DX-A8BX-01 20 32848194 32848194 G A ASIP Missense_Mutation p.R5H 0.18 tolerated(0.15) benign(0) TCGA-DX-A8BX-01 20 42275584 42275584 C T IFT52 Silent p.D425D 0.27 TCGA-DX-A8BX-01 20 62614400 62614400 C T PRPF6 Silent p.G24G 0.31 TCGA-DX-A8BX-01 21 31797893 31797893 C T KRTAP13-3 Missense_Mutation p.G113E 0.46 deleterious(0.01) probably_damaging(0.946) TCGA-DX-A8BX-01 21 40196034 40196037 AGTT - ETS2 3'UTR 0.30 TCGA-DX-A8BX-01 21 46058347 46058347 A T KRTAP10-10 3'UTR 0.22 TCGA-DX-A8BX-01 2 113993867 113993867 C G PAX8 Intron 0.23 TCGA-DX-A8BX-01 2 166188073 166188073 A T SCN2A Missense_Mutation p.N795Y 0.29 deleterious(0) probably_damaging(1) TCGA-DX-A8BX-01 2 178257538 178257538 A G AGPS Silent p.A7A 0.17 TCGA-DX-A8BX-01 2 225630219 225630219 G T DOCK10 3'UTR 0.40 TCGA-DX-A8BX-01 2 3750075 3750075 C T ALLC Silent p.F366F 0.25 TCGA-DX-A8BX-01 3 134911541 134911541 C T EPHB1 Missense_Mutation p.A669V 0.36 deleterious(0) probably_damaging(0.993) TCGA-DX-A8BX-01 3 178936094 178936094 C A PIK3CA Missense_Mutation p.Q546K 0.33 deleterious(0.03) probably_damaging(0.952) TCGA-DX-A8BX-01 3 52940182 52940182 G A SFMBT1 Missense_Mutation p.R803W 0.08 deleterious(0) probably_damaging(0.97) TCGA-DX-A8BX-01 4 123150375 123150375 G C KIAA1109 Missense_Mutation p.G1008R 0.31 probably_damaging(0.92) TCGA-DX-A8BX-01 4 55564565 55564565 C T KIT Silent p.C151C 0.09 TCGA-DX-A8BX-01 4 62937942 62937943 - A LPHN3 3'UTR 0.39 TCGA-DX-A8BX-01 4 8609140 8609140 G A CPZ Silent p.T405T 0.39 TCGA-DX-A8BX-01 5 1279444 1279444 G A TERT Missense_Mutation p.R698W 0.25 deleterious(0) probably_damaging(0.987) TCGA-DX-A8BX-01 5 140222280 140222280 C T PCDHA8 Silent p.P458P 0.20 TCGA-DX-A8BX-01 5 148753976 148753976 C T IL17B Missense_Mutation p.A167T 0.32 tolerated(1) benign(0.002) TCGA-DX-A8BX-01 5 179078922 179078922 G C AC136604.1 Silent p.L135L 0.17 TCGA-DX-A8BX-01 5 37835883 37835883 C T GDNF 5'UTR 0.36 TCGA-DX-A8BX-01 5 9063189 9063189 C A SEMA5A Silent p.G776G 0.21 TCGA-DX-A8BX-01 5 98236658 98236658 T A CHD1 Missense_Mutation p.N239I 0.14 deleterious(0.02) benign(0.118) TCGA-DX-A8BX-01 6 163986934 163986934 C G QKI Intron 0.16 TCGA-DX-A8BX-01 6 166401082 166401082 A T LINC00473 RNA 0.32 TCGA-DX-A8BX-01 6 26225736 26225736 G A HIST1H3E Silent p.V118V 0.20 TCGA-DX-A8BX-01 6 56489356 56489356 T G DST Missense_Mutation p.D1097A 0.28 probably_damaging(0.929) TCGA-DX-A8BX-01 7 148851394 148851394 C T ZNF398 Silent p.L128L 0.32 TCGA-DX-A8BX-01 7 19184676 19184676 G A FERD3L Nonsense_Mutation p.Q104* 0.10 TCGA-DX-A8BX-01 7 43918580 43918582 GCT C URGCP Frame_Shift_Del p.A161* 0.11 TCGA-DX-A8BX-01 7 44920810 44920810 G T PURB 3'UTR 0.22 TCGA-DX-A8BX-01 7 75228536 75228536 C T HIP1 Silent p.T50T 0.19 TCGA-DX-A8BX-01 7 82544714 82544714 A G PCLO Silent p.I4196I 0.12 TCGA-DX-A8BX-01 7 95625320 95625320 G C DYNC1I1 Missense_Mutation p.G319R 0.40 deleterious(0) probably_damaging(1) TCGA-DX-A8BX-01 8 144995433 144995433 G A PLEC Silent p.G2989G 0.22 TCGA-DX-A8BX-01 8 23115855 23115855 C G CHMP7 Missense_Mutation p.L285V 0.32 deleterious(0) probably_damaging(0.974) TCGA-DX-A8BX-01 8 2944755 2944755 C T CSMD1 Silent p.R2446R 0.24 TCGA-DX-A8BX-01 8 3265506 3265506 C A CSMD1 Missense_Mutation p.Q662H 0.20 probably_damaging(0.983) TCGA-DX-A8BX-01 8 42873625 42873625 C T HOOK3 Missense_Mutation p.P714L 0.39 deleterious(0) possibly_damaging(0.771) TCGA-DX-A8BX-01 9 131847005 131847005 C T DOLPP1 Silent p.V45V 0.44 TCGA-DX-A8BX-01 9 71628289 71628289 G A PRKACG Silent p.Y240Y 0.25 TCGA-DX-A8BX-01 9 74360217 74360217 C A TMEM2 Missense_Mutation p.G251C 0.22 deleterious(0) probably_damaging(0.998) TCGA-DX-A8BX-01 9 96021357 96021357 C G WNK2 Missense_Mutation p.L843V 0.23 benign(0.364) TCGA-DX-A8BX-01 X 133561664 133561664 T C PHF6 3'UTR 0.09 TCGA-DX-A8BX-01 Y 6958128 6958128 A T TBL1Y Splice_Site p.X483_splice 0.10 TCGA-DX-A8BZ-01 10 118138018 118138018 A G CCDC172 Missense_Mutation p.E246G 0.06 deleterious(0) possibly_damaging(0.63) TCGA-DX-A8BZ-01 10 47000213 47000213 C T GPRIN2 Missense_Mutation p.R445W 0.14 deleterious(0.04) probably_damaging(0.989) TCGA-DX-A8BZ-01 11 46747683 46747683 G T F2 Silent p.G278G 0.26 TCGA-DX-A8BZ-01 11 591456 591456 A G PHRF1 Missense_Mutation p.I165V 0.38 tolerated(0.27) benign(0.006) TCGA-DX-A8BZ-01 11 71726497 71726497 C T NUMA1 Silent p.Q684Q 0.22 TCGA-DX-A8BZ-01 11 77910502 77910502 G T USP35 Intron 0.27 TCGA-DX-A8BZ-01 12 110011175 110011175 A C MMAB Silent p.P37P 0.36 TCGA-DX-A8BZ-01 12 50480064 50480064 C A SMARCD1 Missense_Mutation p.R100S 0.12 tolerated(0.06) benign(0.02) TCGA-DX-A8BZ-01 12 52793804 52793804 T C KRT82 Missense_Mutation p.S303G 0.12 deleterious(0) probably_damaging(0.994) TCGA-DX-A8BZ-01 12 66641685 66641685 T A IRAK3 Missense_Mutation p.C509S 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-DX-A8BZ-01 13 43462276 43462276 T A EPSTI1 3'UTR 0.14 TCGA-DX-A8BZ-01 14 68087671 68087671 C T ARG2 Missense_Mutation p.L58F 0.14 deleterious(0.01) probably_damaging(0.918) TCGA-DX-A8BZ-01 14 77319755 77319755 T C C14orf166B Splice_Site p.X336_splice 0.25 TCGA-DX-A8BZ-01 14 94933552 94933552 C G SERPINA9 Missense_Mutation p.D284H 0.14 deleterious(0.04) benign(0.051) TCGA-DX-A8BZ-01 14 96134782 96134782 G A TCL6 Intron 0.56 TCGA-DX-A8BZ-01 15 59428661 59428661 A G MYO1E 3'UTR 0.25 TCGA-DX-A8BZ-01 16 1271600 1271600 C T CACNA1H 3'UTR 0.35 TCGA-DX-A8BZ-01 16 1435296 1435296 C T UNKL Missense_Mutation p.G390S 0.14 tolerated(0.46) benign(0.018) TCGA-DX-A8BZ-01 16 2283527 2283527 T C E4F1 Missense_Mutation p.L382P 0.18 deleterious(0) probably_damaging(0.934) TCGA-DX-A8BZ-01 17 16722353 16722353 G A AC022596.6 RNA 0.64 TCGA-DX-A8BZ-01 17 48438380 48438380 G A XYLT2 3'UTR 0.41 TCGA-DX-A8BZ-01 17 72832223 72832223 C T TMEM104 Silent p.P296P 0.11 TCGA-DX-A8BZ-01 17 76117780 76117780 C T TMC6 Missense_Mutation p.E414K 0.43 deleterious(0) benign(0.296) TCGA-DX-A8BZ-01 17 8044406 8044406 C T PER1 Missense_Mutation p.A1285T 0.11 tolerated_low_confidence(1) benign(0) TCGA-DX-A8BZ-01 17 8170914 8170914 C T PFAS Silent p.L1105L 0.12 TCGA-DX-A8BZ-01 18 29203270 29203270 A G B4GALT6 3'UTR 0.14 TCGA-DX-A8BZ-01 19 15061039 15061039 G A SLC1A6 Missense_Mutation p.R555W 0.39 deleterious(0) probably_damaging(0.985) TCGA-DX-A8BZ-01 19 18724735 18724735 C G TMEM59L Missense_Mutation p.S75R 0.27 deleterious(0.03) possibly_damaging(0.82) TCGA-DX-A8BZ-01 19 40331067 40331067 C T FBL Silent p.P90P 0.15 TCGA-DX-A8BZ-01 19 55048290 55048290 C T KIR3DX1 Missense_Mutation p.T286M 0.45 deleterious(0.03) benign(0.432) TCGA-DX-A8BZ-01 1 12943013 12943013 A G PRAMEF4 Missense_Mutation p.L68P 0.04 deleterious(0.01) benign(0.088) TCGA-DX-A8BZ-01 1 148346982 148346982 A G NBPF20 5'UTR 0.15 TCGA-DX-A8BZ-01 1 154297008 154297008 G T AQP10 3'UTR 0.20 TCGA-DX-A8BZ-01 1 158583576 158583576 G T SPTA1 Silent p.P2308P 0.28 TCGA-DX-A8BZ-01 1 3342727 3342727 G T PRDM16 Silent p.S1074S 0.54 TCGA-DX-A8BZ-01 1 34006739 34006739 C T CSMD2 Missense_Mutation p.V3006I 0.30 tolerated(0.23) benign(0.013) TCGA-DX-A8BZ-01 1 76276463 76276463 T C MSH4 Silent p.L224L 0.43 TCGA-DX-A8BZ-01 1 89583433 89583433 C T GBP2 Missense_Mutation p.R151Q 0.26 tolerated(0.11) benign(0.132) TCGA-DX-A8BZ-01 21 46918299 46918299 G A COL18A1 Intron 0.19 TCGA-DX-A8BZ-01 2 165944970 165944970 C - SCN3A 3'UTR 0.16 TCGA-DX-A8BZ-01 2 165946239 165946239 A T SCN3A 3'UTR 0.33 TCGA-DX-A8BZ-01 2 202626470 202626470 T A ALS2 Missense_Mutation p.I83F 0.17 deleterious(0.01) benign(0.056) TCGA-DX-A8BZ-01 2 220439577 220439577 G C INHA Missense_Mutation p.A144P 0.35 deleterious(0.05) benign(0.013) TCGA-DX-A8BZ-01 2 27282360 27282360 C T AGBL5 Intron 0.18 TCGA-DX-A8BZ-01 2 42559087 42559087 A G EML4 3'UTR 0.14 TCGA-DX-A8BZ-01 2 98340859 98340859 C T ZAP70 Silent p.D120D 0.46 TCGA-DX-A8BZ-01 3 124223670 124223670 C T KALRN Intron 0.15 TCGA-DX-A8BZ-01 3 130743806 130743806 A G ASTE1 Silent p.C115C 0.15 TCGA-DX-A8BZ-01 3 183910980 183910980 G A ABCF3 Missense_Mutation p.G614D 0.29 deleterious(0) probably_damaging(1) TCGA-DX-A8BZ-01 3 184043535 184043535 A G EIF4G1 Intron 0.38 TCGA-DX-A8BZ-01 3 49373013 49373013 G T USP4 Silent p.R40R 0.18 TCGA-DX-A8BZ-01 5 102432377 102432377 C - GIN1 Frame_Shift_Del p.V388Lfs*6 0.21 TCGA-DX-A8BZ-01 5 149901311 149901311 C T NDST1 Silent p.G165G 0.08 TCGA-DX-A8BZ-01 6 33263137 33263137 G A RGL2 Silent p.S361S 0.44 TCGA-DX-A8BZ-01 6 38794123 38794123 C T DNAH8 Missense_Mutation p.R1130C 0.40 possibly_damaging(0.832) TCGA-DX-A8BZ-01 6 44147871 44147871 G A CAPN11 Silent p.R537R 0.12 TCGA-DX-A8BZ-01 6 69684656 69684656 A T BAI3 Silent p.A509A 0.43 TCGA-DX-A8BZ-01 7 100806047 100806047 C T VGF 3'UTR 0.41 TCGA-DX-A8BZ-01 7 136849019 136849019 G A hsa-mir-490 Intron 0.19 TCGA-DX-A8BZ-01 7 140398056 140398056 G T NDUFB2 Intron 0.37 TCGA-DX-A8BZ-01 7 150752394 150752394 C T CDK5 Missense_Mutation p.D184N 0.12 deleterious(0.02) probably_damaging(1) TCGA-DX-A8BZ-01 8 124799949 124799949 T C FAM91A1 Missense_Mutation p.S413P 0.12 deleterious(0.01) benign(0.251) TCGA-DX-A8BZ-01 8 145057487 145057487 C T PARP10 Missense_Mutation p.C757Y 0.26 tolerated(0.09) benign(0.014) TCGA-DX-A8BZ-01 9 138594181 138594181 C - KCNT1 Frame_Shift_Del p.F27Sfs*28 0.26 TCGA-DX-A8BZ-01 9 4849484 4849484 T C RCL1 Missense_Mutation p.L302P 0.18 deleterious(0.02) probably_damaging(0.962) TCGA-DX-A8BZ-01 X 153582556 153582556 G A FLNA Silent p.H1840H 0.19 TCGA-DX-A8BZ-01 X 22196424 22196424 T C PHEX Missense_Mutation p.V506A 0.51 tolerated(0.07) probably_damaging(0.984) TCGA-DX-A8BZ-01 X 3264635 3264635 G C MXRA5 5'UTR 0.29 TCGA-DX-A8BZ-01 X 43571984 43571984 T C MAOA Silent p.H148H 0.33 TCGA-DX-A8BZ-01 X 47035947 47035947 C T RBM10 Missense_Mutation p.P209S 0.19 tolerated(0.06) probably_damaging(0.996) TCGA-DX-AATS-01 10 24880580 24880580 T C ARHGAP21 Silent p.E1345E 0.14 TCGA-DX-AATS-01 10 49654494 49654494 C G ARHGAP22 Missense_Mutation p.E695D 0.25 tolerated(0.4) benign(0.205) TCGA-DX-AATS-01 10 5435603 5435603 G A TUBAL3 Silent p.Y406Y 0.21 TCGA-DX-AATS-01 11 117864852 117864852 C A IL10RA Missense_Mutation p.L226I 0.11 tolerated(0.33) benign(0.084) TCGA-DX-AATS-01 11 124747470 124747470 C T ROBO3 Missense_Mutation p.H968Y 0.42 tolerated(0.05) possibly_damaging(0.742) TCGA-DX-AATS-01 11 18956293 18956293 T G MRGPRX1 Silent p.T13T 0.09 TCGA-DX-AATS-01 11 44289129 44289129 C T ALX4 Missense_Mutation p.R274H 0.86 deleterious(0) probably_damaging(0.98) TCGA-DX-AATS-01 11 6635721 6635721 G A TPP1 3'UTR 0.23 TCGA-DX-AATS-01 11 92533566 92533566 C A FAT3 Missense_Mutation p.P2463T 0.33 possibly_damaging(0.515) TCGA-DX-AATS-01 12 119568494 119568494 G A SRRM4 Missense_Mutation p.R209Q 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.776) TCGA-DX-AATS-01 12 125267313 125267313 C T SCARB1 Silent p.K482K 0.60 TCGA-DX-AATS-01 12 22839127 22839127 T C ETNK1 3'UTR 0.33 TCGA-DX-AATS-01 12 42555465 42555465 T C YAF2 Silent p.E109E 0.13 TCGA-DX-AATS-01 12 43823442 43823442 C A ADAMTS20 Missense_Mutation p.W1156L 0.22 deleterious(0) probably_damaging(0.923) TCGA-DX-AATS-01 12 48920302 48920302 G A OR8S1 Silent p.K296K 0.32 TCGA-DX-AATS-01 12 6125336 6125336 C A VWF Missense_Mutation p.A1792S 0.21 tolerated(0.05) probably_damaging(0.918) TCGA-DX-AATS-01 12 63963076 63963076 A T DPY19L2 Missense_Mutation p.V685E 0.05 deleterious(0) probably_damaging(0.977) TCGA-DX-AATS-01 12 66603234 66603234 A T IRAK3 Splice_Site p.X106_splice 0.10 TCGA-DX-AATS-01 13 103492331 103492332 - A BIVM 3'UTR 0.19 TCGA-DX-AATS-01 14 101200664 101200664 C T DLK1 Missense_Mutation p.R195W 0.62 tolerated(0.1) probably_damaging(1) TCGA-DX-AATS-01 14 107048875 107048875 T A IGHV3-53 Missense_Mutation p.S49C 0.12 deleterious_low_confidence(0) probably_damaging(0.927) TCGA-DX-AATS-01 14 20296162 20296162 C T OR4N2 Silent p.I185I 0.09 TCGA-DX-AATS-01 14 20404427 20404427 C T OR4K1 Missense_Mutation p.T201M 0.09 deleterious(0) possibly_damaging(0.863) TCGA-DX-AATS-01 14 22102287 22102287 C A OR10G2 Missense_Mutation p.G238W 0.18 deleterious(0) probably_damaging(1) TCGA-DX-AATS-01 14 36982394 36982394 G C SFTA3 5'UTR 0.15 TCGA-DX-AATS-01 14 45393820 45393820 A G KLHL28 3'UTR 0.34 TCGA-DX-AATS-01 14 53194452 53194452 A G PSMC6 3'UTR 0.38 TCGA-DX-AATS-01 14 56767164 56767164 C T PELI2 3'UTR 0.25 TCGA-DX-AATS-01 15 22318950 22318950 T C RP11-69H14.6 RNA 0.05 TCGA-DX-AATS-01 15 22929738 22929738 G T CYFIP1 Missense_Mutation p.G138W 0.20 deleterious(0.01) possibly_damaging(0.592) TCGA-DX-AATS-01 15 24921079 24921079 G A NPAP1 Missense_Mutation p.R22H 0.42 tolerated_low_confidence(0.08) possibly_damaging(0.715) TCGA-DX-AATS-01 15 24921350 24921350 T A NPAP1 Missense_Mutation p.S112R 0.13 tolerated(1) benign(0.005) TCGA-DX-AATS-01 15 31359349 31359349 A G TRPM1 Missense_Mutation p.S196P 0.43 deleterious(0) probably_damaging(0.997) TCGA-DX-AATS-01 15 43785272 43785272 G C TP53BP1 5'UTR 0.88 TCGA-DX-AATS-01 16 23722303 23722303 A G ERN2 Missense_Mutation p.S92P 0.62 deleterious(0) probably_damaging(0.929) TCGA-DX-AATS-01 16 28618098 28618098 T C SULT1A1 Missense_Mutation p.Y193C 0.52 deleterious(0) probably_damaging(0.996) TCGA-DX-AATS-01 16 31098211 31098211 G A RP11-196G11.1 Missense_Mutation p.A159V 0.73 tolerated_low_confidence(0.64) possibly_damaging(0.787) TCGA-DX-AATS-01 16 46964588 46964588 C T GPT2 3'UTR 0.74 TCGA-DX-AATS-01 16 48145504 48145504 C A ABCC12 Missense_Mutation p.D732Y 0.48 deleterious(0) possibly_damaging(0.526) TCGA-DX-AATS-01 16 57417232 57417232 C T CX3CL1 3'UTR 0.81 TCGA-DX-AATS-01 16 68398795 68398795 G A SMPD3 Missense_Mutation p.R472W 0.26 deleterious(0) probably_damaging(1) TCGA-DX-AATS-01 16 89871761 89871761 C G FANCA Missense_Mutation p.R212S 0.25 tolerated(0.73) benign(0.227) TCGA-DX-AATS-01 17 35615186 35615186 C A ACACA Missense_Mutation p.C537F 0.85 tolerated(0.1) possibly_damaging(0.533) TCGA-DX-AATS-01 17 7578431 7578431 G A TP53 Nonsense_Mutation p.Q167* 0.89 TCGA-DX-AATS-01 17 9541928 9541928 G A WDR16 Missense_Mutation p.R492H 0.45 tolerated(0.1) benign(0.042) TCGA-DX-AATS-01 18 14478196 14478196 C T CXADRP3 RNA 0.66 TCGA-DX-AATS-01 18 44774821 44774821 G T SKOR2 Missense_Mutation p.P245H 0.38 probably_damaging(0.92) TCGA-DX-AATS-01 18 71797895 71797895 T A FBXO15 Splice_Site p.X111_splice 0.19 TCGA-DX-AATS-01 19 19338426 19338426 C T NCAN Missense_Mutation p.T666M 0.10 deleterious(0.05) benign(0.379) TCGA-DX-AATS-01 19 22271887 22271887 C A ZNF257 Nonsense_Mutation p.Y445* 0.32 TCGA-DX-AATS-01 19 33464449 33464449 G A C19orf40 Missense_Mutation p.R75K 0.26 tolerated(0.73) benign(0.019) TCGA-DX-AATS-01 19 36340496 36340496 G T NPHS1 Missense_Mutation p.A223E 0.66 deleterious(0) possibly_damaging(0.745) TCGA-DX-AATS-01 19 4249286 4249286 G A CCDC94 Missense_Mutation p.R29Q 0.11 deleterious(0) benign(0.248) TCGA-DX-AATS-01 19 44661134 44661137 GTAA - ZNF234 Frame_Shift_Del p.K323Vfs*88 0.16 TCGA-DX-AATS-01 19 50766628 50766628 C T MYH14 Missense_Mutation p.A882V 0.31 tolerated(0.11) benign(0.179) TCGA-DX-AATS-01 19 51020819 51020819 C T LRRC4B 3'UTR 0.39 TCGA-DX-AATS-01 19 52505095 52505095 T C ZNF615 Missense_Mutation p.E70G 0.25 tolerated(0.09) benign(0.031) TCGA-DX-AATS-01 19 5783472 5783472 G A PRR22 Silent p.A262A 0.35 TCGA-DX-AATS-01 19 58005000 58005000 A G ZNF419 Missense_Mutation p.I360V 0.83 tolerated(0.16) benign(0.033) TCGA-DX-AATS-01 19 9033260 9033260 G A MUC16 Silent p.L12122L 0.16 TCGA-DX-AATS-01 19 9033271 9033271 G A MUC16 Silent p.L12119L 0.17 TCGA-DX-AATS-01 19 9062319 9062319 G T MUC16 Missense_Mutation p.P8376H 0.15 unknown(0) TCGA-DX-AATS-01 1 11586796 11586796 G A PTCHD2 Missense_Mutation p.R901H 0.37 tolerated_low_confidence(0.14) benign(0.002) TCGA-DX-AATS-01 1 145542263 145542263 G C ITGA10 Missense_Mutation p.E1163D 0.10 tolerated(0.4) unknown(0) TCGA-DX-AATS-01 1 160604456 160604456 C A SLAMF1 Missense_Mutation p.S216I 0.29 deleterious(0) probably_damaging(0.999) TCGA-DX-AATS-01 1 161676962 161676962 G A FCRLA 5'UTR 0.29 TCGA-DX-AATS-01 1 197885716 197885716 G A LHX9 5'Flank 0.79 TCGA-DX-AATS-01 1 22206638 22206638 G T HSPG2 Missense_Mutation p.H769N 0.58 probably_damaging(1) TCGA-DX-AATS-01 1 244217791 244217791 G T ZBTB18 Missense_Mutation p.V239L 0.79 tolerated(0.65) benign(0.001) TCGA-DX-AATS-01 1 34383777 34383777 T C CSMD2 Missense_Mutation p.I240V 0.12 tolerated(0.19) possibly_damaging(0.641) TCGA-DX-AATS-01 20 20620468 20620468 G T RALGAPA2 Nonsense_Mutation p.C209* 0.43 TCGA-DX-AATS-01 20 31507980 31507980 C A EFCAB8 Missense_Mutation p.Q215K 0.20 TCGA-DX-AATS-01 21 34109575 34109575 T A PAXBP1 Nonsense_Mutation p.R876* 0.11 TCGA-DX-AATS-01 22 39439095 39439095 G A APOBEC3F Silent p.Q57Q 0.07 TCGA-DX-AATS-01 22 42335197 42335197 C T CENPM Missense_Mutation p.E136K 0.38 tolerated(0.17) benign(0.014) TCGA-DX-AATS-01 22 45278894 45278894 C T PHF21B 3'UTR 0.13 TCGA-DX-AATS-01 2 101023037 101023037 C G CHST10 Splice_Site p.X34_splice 0.89 TCGA-DX-AATS-01 2 163217446 163217446 G A GCA 3'UTR 0.44 TCGA-DX-AATS-01 2 220379808 220379808 A G ASIC4 Missense_Mutation p.N248S 0.22 deleterious(0.01) probably_damaging(0.996) TCGA-DX-AATS-01 3 113379809 113379809 G A KIAA2018 Silent p.P240P 0.33 TCGA-DX-AATS-01 3 122002947 122002947 C T CASR Missense_Mutation p.R726C 0.25 deleterious(0.04) probably_damaging(0.998) TCGA-DX-AATS-01 3 138023764 138023764 C T NME9 Missense_Mutation p.V187I 1.00 tolerated(0.27) benign(0.002) TCGA-DX-AATS-01 3 151011993 151011993 C T GPR87 Silent p.S347S 0.74 TCGA-DX-AATS-01 3 16646111 16646111 C T DAZL 5'UTR 0.17 TCGA-DX-AATS-01 3 32805973 32805973 A G CNOT10 Missense_Mutation p.M683V 0.95 tolerated(0.68) benign(0.004) TCGA-DX-AATS-01 3 4856236 4856236 C A ITPR1 Missense_Mutation p.P2549Q 0.17 deleterious(0) probably_damaging(1) TCGA-DX-AATS-01 3 61975440 61975440 C T PTPRG Missense_Mutation p.S111F 0.24 deleterious(0) probably_damaging(1) TCGA-DX-AATS-01 4 139092930 139092931 AG - SLC7A11 3'UTR 0.20 TCGA-DX-AATS-01 4 151392869 151392869 G A LRBA Missense_Mutation p.R2203C 0.83 deleterious(0) possibly_damaging(0.797) TCGA-DX-AATS-01 4 2513722 2513722 G C RNF4 Intron 0.08 TCGA-DX-AATS-01 4 70823108 70823108 G T CSN2 Missense_Mutation p.P187T 0.29 tolerated(0.31) probably_damaging(0.975) TCGA-DX-AATS-01 5 127595063 127595063 C T FBN2 3'UTR 0.22 TCGA-DX-AATS-01 5 137683754 137683754 A G FAM53C 3'UTR 0.31 TCGA-DX-AATS-01 5 140307701 140307701 C A PCDHAC1 Silent p.I408I 0.35 TCGA-DX-AATS-01 5 140474789 140474789 G C PCDHB2 Missense_Mutation p.E139Q 0.36 deleterious_low_confidence(0.04) benign(0.07) TCGA-DX-AATS-01 5 140806086 140806086 C T PCDHGB6 Intron 0.58 TCGA-DX-AATS-01 5 150932823 150932823 C G FAT2 Silent p.T1357T 0.19 TCGA-DX-AATS-01 5 168149295 168149295 G T SLIT3 Missense_Mutation p.H817N 0.21 tolerated(0.38) benign(0.292) TCGA-DX-AATS-01 5 2749852 2749852 T C IRX2 Missense_Mutation p.Y100C 0.12 deleterious(0) probably_damaging(0.997) TCGA-DX-AATS-01 5 73189057 73189057 C T ARHGEF28 Missense_Mutation p.S1201F 0.50 deleterious(0.01) benign(0.046) TCGA-DX-AATS-01 6 10935392 10935392 G A SYCP2L Silent p.L595L 0.47 TCGA-DX-AATS-01 6 136878724 136878724 G C MAP3K5 3'UTR 0.79 TCGA-DX-AATS-01 6 149732202 149732203 - T TAB2 3'UTR 0.12 TCGA-DX-AATS-01 6 31728508 31728508 G A MSH5 Silent p.V618V 0.41 TCGA-DX-AATS-01 6 35543230 35543230 A T FKBP5 3'UTR 0.05 TCGA-DX-AATS-01 6 50682937 50682937 A G TFAP2D Missense_Mutation p.T50A 0.28 tolerated(0.21) benign(0) TCGA-DX-AATS-01 6 73843173 73843173 G A KCNQ5 Missense_Mutation p.R445H 0.28 deleterious(0) probably_damaging(0.985) TCGA-DX-AATS-01 6 89673283 89673283 G A RNGTT 5'UTR 0.58 TCGA-DX-AATS-01 6 96656239 96656239 T A FUT9 3'UTR 0.14 TCGA-DX-AATS-01 6 99817499 99817499 C T COQ3 Missense_Mutation p.V363M 0.36 tolerated_low_confidence(0.05) benign(0.062) TCGA-DX-AATS-01 7 117149156 117149156 T C CFTR Missense_Mutation p.F78S 0.13 tolerated(0.42) benign(0.014) TCGA-DX-AATS-01 7 127326757 127326757 G T SND1 Nonsense_Mutation p.G57* 0.19 TCGA-DX-AATS-01 7 142334683 142334683 C T TRBV20-1 Silent p.I35I 0.29 TCGA-DX-AATS-01 7 149170890 149170890 C A ZNF746 3'UTR 0.15 TCGA-DX-AATS-01 7 6029584 6029584 A T PMS2 Missense_Mutation p.C331S 0.12 tolerated(0.18) possibly_damaging(0.728) TCGA-DX-AATS-01 7 95814251 95814251 A G SLC25A13 Missense_Mutation p.S337P 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-DX-AATS-01 7 99772314 99772314 C T GPC2 Silent p.A241A 0.08 TCGA-DX-AATS-01 8 113323343 113323343 C A CSMD3 Missense_Mutation p.Q2583H 0.24 tolerated(0.18) probably_damaging(0.99) TCGA-DX-AATS-01 8 143395764 143395764 G A TSNARE1 Missense_Mutation p.A371V 0.36 tolerated(0.15) possibly_damaging(0.899) TCGA-DX-AATS-01 8 2037929 2037929 T C MYOM2 Silent p.Y581Y 0.57 TCGA-DX-AATS-01 9 108120650 108120650 A T SLC44A1 Silent p.I232I 0.20 TCGA-DX-AATS-01 9 123739000 123739000 C A C5 Missense_Mutation p.G1281V 0.05 deleterious(0) probably_damaging(0.99) TCGA-DX-AATS-01 9 136209360 136209360 G C MED22 Intron 0.07 TCGA-DX-AATS-01 9 34251999 34251999 G T UBAP1 3'UTR 0.16 TCGA-DX-AATS-01 9 43627384 43627384 C A SPATA31A6 Missense_Mutation p.D435Y 0.07 deleterious(0.01) possibly_damaging(0.735) TCGA-DX-AATS-01 9 97321346 97321346 C T FBP2 Silent p.T298T 0.35 TCGA-DX-AATS-01 X 41586873 41586873 C A GPR82 Silent p.I198I 0.24 TCGA-DX-AATS-01 X 54786208 54786208 A G ITIH6 Silent p.H352H 0.07 TCGA-DX-AATS-01 X 76939398 76939419 ACAAGGTTTTTCTCCTTTTCGT - ATRX Frame_Shift_Del p.R444Lfs*19 0.58 TCGA-DX-AATS-01 X 78427344 78427344 T C GPR174 Silent p.L280L 0.61 TCGA-DX-AB2E-01 10 101689372 101689372 T C DNMBP Intron 0.68 TCGA-DX-AB2E-01 10 101689373 101689373 T A DNMBP Intron 0.68 TCGA-DX-AB2E-01 10 104018687 104018687 T C GBF1 Intron 0.66 TCGA-DX-AB2E-01 10 105799254 105799254 G A COL17A1 Missense_Mutation p.L949F 0.59 probably_damaging(0.979) TCGA-DX-AB2E-01 10 115364512 115364512 C T NRAP Missense_Mutation p.M1361I 0.85 tolerated(0.05) benign(0.016) TCGA-DX-AB2E-01 10 117228698 117228698 G A ATRNL1 Silent p.G1171G 0.64 TCGA-DX-AB2E-01 10 12130993 12130993 C T DHTKD1 Silent p.F242F 0.30 TCGA-DX-AB2E-01 10 123848097 123848097 G A TACC2 Missense_Mutation p.G1855E 0.57 benign(0.037) TCGA-DX-AB2E-01 10 124336154 124336154 G A DMBT1 Missense_Mutation p.E175K 0.66 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 10 124457412 124457412 C T C10orf120 Missense_Mutation p.R282Q 0.65 deleterious(0.03) probably_damaging(0.997) TCGA-DX-AB2E-01 10 124591959 124591959 C T CUZD1 Silent p.Q553Q 0.67 TCGA-DX-AB2E-01 10 128830476 128830476 G A DOCK1 Missense_Mutation p.G581S 0.75 tolerated(0.31) probably_damaging(0.959) TCGA-DX-AB2E-01 10 13230981 13230981 C T MCM10 Missense_Mutation p.P440L 0.44 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 10 134942553 134942553 C T GPR123 Silent p.F407F 0.89 TCGA-DX-AB2E-01 10 135440242 135440242 C T FRG2B Missense_Mutation p.G2E 0.07 tolerated(0.85) probably_damaging(1) TCGA-DX-AB2E-01 10 14884575 14884575 C T HSPA14 Intron 0.16 TCGA-DX-AB2E-01 10 16553079 16553079 C T PTER Nonsense_Mutation p.R292* 0.28 TCGA-DX-AB2E-01 10 17756893 17756893 C T STAM 3'UTR 0.45 TCGA-DX-AB2E-01 10 20290848 20290848 C T PLXDC2 Missense_Mutation p.S86F 0.43 tolerated(0.15) benign(0.429) TCGA-DX-AB2E-01 10 25888186 25888186 G A GPR158 Missense_Mutation p.D1211N 0.43 tolerated_low_confidence(0.46) benign(0) TCGA-DX-AB2E-01 10 26593340 26593340 C T GAD2 3'UTR 0.32 TCGA-DX-AB2E-01 10 28233361 28233361 C T ARMC4 Splice_Site p.X512_splice 0.36 TCGA-DX-AB2E-01 10 30602582 30602582 A G MTPAP Missense_Mutation p.F569L 0.40 tolerated_low_confidence(0.69) benign(0.001) TCGA-DX-AB2E-01 10 3180243 3180243 G A PITRM1 Missense_Mutation p.P1033S 0.22 tolerated(0.09) possibly_damaging(0.566) TCGA-DX-AB2E-01 10 43281059 43281059 C T BMS1 Silent p.L102L 0.62 TCGA-DX-AB2E-01 10 43882742 43882742 G A HNRNPF Silent p.P197P 0.59 TCGA-DX-AB2E-01 10 46967597 46967597 C T SYT15 Silent p.E160E 0.14 TCGA-DX-AB2E-01 10 47086771 47086771 T A NPY4R 5'UTR 0.19 TCGA-DX-AB2E-01 10 47087209 47087209 C T NPY4R Silent p.L142L 0.19 TCGA-DX-AB2E-01 10 49371643 49371643 C T FRMPD2 Silent p.L1203L 0.65 TCGA-DX-AB2E-01 10 49430373 49430373 C A FRMPD2 Missense_Mutation p.G480C 0.54 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 10 49430457 49430457 G A FRMPD2 Missense_Mutation p.R452W 0.40 deleterious(0) benign(0.025) TCGA-DX-AB2E-01 10 50944095 50944095 G A OGDHL Silent p.T961T 0.56 TCGA-DX-AB2E-01 10 51065484 51065484 G A PARG Missense_Mutation p.R256C 0.60 deleterious(0) probably_damaging(0.993) TCGA-DX-AB2E-01 10 51748341 51748341 C T AGAP6 5'Flank 0.28 TCGA-DX-AB2E-01 10 52588055 52588055 C T A1CF Missense_Mutation p.G210E 0.59 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2E-01 10 55582496 55582496 A T PCDH15 Missense_Mutation p.F1666I 0.64 tolerated_low_confidence(0.41) benign(0.005) TCGA-DX-AB2E-01 10 61831215 61831215 G A ANK3 Missense_Mutation p.P3142S 0.71 probably_damaging(0.992) TCGA-DX-AB2E-01 10 61832873 61832873 G A ANK3 Missense_Mutation p.T2589I 0.89 probably_damaging(0.981) TCGA-DX-AB2E-01 10 61833091 61833091 G A ANK3 Silent p.S2516S 0.59 TCGA-DX-AB2E-01 10 61955932 61955932 G A ANK3 Nonsense_Mutation p.Q620* 0.69 TCGA-DX-AB2E-01 10 64567730 64567730 C T ADO 3'UTR 0.61 TCGA-DX-AB2E-01 10 697090 697090 G A PRR26 Missense_Mutation p.G195R 0.42 probably_damaging(0.98) TCGA-DX-AB2E-01 10 697091 697091 G A PRR26 Missense_Mutation p.G195E 0.42 probably_damaging(0.97) TCGA-DX-AB2E-01 10 73765544 73765544 C T CHST3 5'UTR 0.67 TCGA-DX-AB2E-01 10 73765545 73765545 C T CHST3 5'UTR 0.67 TCGA-DX-AB2E-01 10 7759616 7759616 C A ITIH2 Missense_Mutation p.F165L 0.38 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 10 81070908 81070908 G A ZMIZ1 Silent p.Q1021Q 0.49 TCGA-DX-AB2E-01 10 88419679 88419679 G A OPN4 Silent p.K287K 0.49 TCGA-DX-AB2E-01 10 88419680 88419680 G T OPN4 Missense_Mutation p.G288C 0.49 deleterious(0.04) possibly_damaging(0.882) TCGA-DX-AB2E-01 10 88419685 88419685 T C OPN4 Silent p.N289N 0.54 TCGA-DX-AB2E-01 10 96053358 96053358 C T PLCE1 Missense_Mutation p.P1710L 0.45 tolerated(0.05) possibly_damaging(0.493) TCGA-DX-AB2E-01 10 96541613 96541613 C T CYP2C19 Silent p.F226F 0.66 TCGA-DX-AB2E-01 10 99130864 99130864 G A RRP12 Intron 0.62 TCGA-DX-AB2E-01 10 99216758 99216758 C T ZDHHC16 3'UTR 0.57 TCGA-DX-AB2E-01 10 99216759 99216759 C T ZDHHC16 3'UTR 0.57 TCGA-DX-AB2E-01 10 99216801 99216801 T A ZDHHC16 3'UTR 0.63 TCGA-DX-AB2E-01 10 99661285 99661287 TGC GG CRTAC1 Frame_Shift_Del p.R369Pfs*41 0.45 TCGA-DX-AB2E-01 11 101362323 101362323 G A TRPC6 Silent p.S364S 0.60 TCGA-DX-AB2E-01 11 102479737 102479737 A G MMP20 Missense_Mutation p.Y248H 0.14 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 11 102487583 102487583 G A MMP20 Missense_Mutation p.P112S 0.56 deleterious(0.01) possibly_damaging(0.47) TCGA-DX-AB2E-01 11 102666278 102666278 G A MMP1 Missense_Mutation p.S229F 0.46 deleterious(0) probably_damaging(0.99) TCGA-DX-AB2E-01 11 1028893 1028893 C G MUC6 Missense_Mutation p.K483N 0.11 unknown(0) TCGA-DX-AB2E-01 11 103270502 103270502 G T DYNC2H1 Missense_Mutation p.V4097F 0.18 possibly_damaging(0.813) TCGA-DX-AB2E-01 11 105850916 105850916 G C GRIA4 3'UTR 0.10 TCGA-DX-AB2E-01 11 108302545 108302545 G A C11orf65 Silent p.H34H 0.41 TCGA-DX-AB2E-01 11 108384720 108384720 C T EXPH5 Missense_Mutation p.R505K 0.61 tolerated(0.19) possibly_damaging(0.616) TCGA-DX-AB2E-01 11 111224948 111224948 C T POU2AF1 3'UTR 0.10 TCGA-DX-AB2E-01 11 113295128 113295128 G A DRD2 Silent p.L82L 0.67 TCGA-DX-AB2E-01 11 117335657 117335657 C T DSCAML1 Splice_Site p.X1149_splice 0.60 TCGA-DX-AB2E-01 11 118894132 118894132 A G TRAPPC4 3'UTR 0.50 TCGA-DX-AB2E-01 11 118917283 118917283 G A HYOU1 Missense_Mutation p.P943S 0.12 tolerated_low_confidence(0.06) benign(0.14) TCGA-DX-AB2E-01 11 120702575 120702575 G A GRIK4 Missense_Mutation p.E176K 0.47 tolerated(0.06) benign(0.304) TCGA-DX-AB2E-01 11 121030984 121030984 C T TECTA Silent p.I1610I 0.16 TCGA-DX-AB2E-01 11 121367755 121367755 G A SORL1 Silent p.V312V 0.50 TCGA-DX-AB2E-01 11 121393685 121393685 C T SORL1 Missense_Mutation p.A528V 0.12 tolerated(0.34) benign(0.078) TCGA-DX-AB2E-01 11 1214196 1214196 C T MUC5AC RNA 0.19 TCGA-DX-AB2E-01 11 123894401 123894401 C T OR10G9 Missense_Mutation p.H228Y 0.18 deleterious(0) benign(0.125) TCGA-DX-AB2E-01 11 123900452 123900452 C T OR10G8 Silent p.L41L 0.12 TCGA-DX-AB2E-01 11 124179743 124179743 C T OR8D1 Missense_Mutation p.G307E 0.24 tolerated(0.19) benign(0.224) TCGA-DX-AB2E-01 11 124495738 124495738 A T TBRG1 Silent p.P131P 0.40 TCGA-DX-AB2E-01 11 124502104 124502104 A G TBRG1 Silent p.S402S 0.50 TCGA-DX-AB2E-01 11 124857872 124857872 G A CCDC15 Missense_Mutation p.D584N 0.12 tolerated(0.26) benign(0) TCGA-DX-AB2E-01 11 125453792 125453792 G A EI24 3'UTR 0.50 TCGA-DX-AB2E-01 11 1263008 1263008 C T MUC5B Missense_Mutation p.P1633L 0.18 unknown(0) TCGA-DX-AB2E-01 11 1267498 1267498 G A MUC5B Missense_Mutation p.G3130R 0.11 unknown(0) TCGA-DX-AB2E-01 11 128781835 128781835 G A KCNJ5 Missense_Mutation p.D223N 0.25 tolerated(0.69) probably_damaging(1) TCGA-DX-AB2E-01 11 130103424 130103424 C T ZBTB44 3'UTR 0.10 TCGA-DX-AB2E-01 11 1651391 1651391 G A KRTAP5-5 Silent p.G107G 0.45 TCGA-DX-AB2E-01 11 17429953 17429953 G A ABCC8 Nonsense_Mutation p.Q936* 0.53 TCGA-DX-AB2E-01 11 17449462 17449462 G A ABCC8 Missense_Mutation p.P690S 0.56 tolerated(0.56) benign(0.001) TCGA-DX-AB2E-01 11 17537820 17537820 G A USH1C Missense_Mutation p.R410C 0.12 deleterious_low_confidence(0) possibly_damaging(0.8) TCGA-DX-AB2E-01 11 19245933 19245933 C T E2F8 3'UTR 0.48 TCGA-DX-AB2E-01 11 2161490 2161490 G A IGF2 Missense_Mutation p.P13S 0.52 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-DX-AB2E-01 11 22397615 22397615 G A SLC17A6 Missense_Mutation p.G421E 0.10 deleterious(0) probably_damaging(0.97) TCGA-DX-AB2E-01 11 2432960 2432960 G A TRPM5 Missense_Mutation p.L838F 0.53 tolerated(0.07) probably_damaging(0.999) TCGA-DX-AB2E-01 11 2432961 2432961 G A TRPM5 Silent p.V837V 0.53 TCGA-DX-AB2E-01 11 2442422 2442422 C T TRPM5 Nonsense_Mutation p.W102* 0.60 TCGA-DX-AB2E-01 11 27114883 27114883 G A BBOX1 Missense_Mutation p.R168K 0.08 deleterious(0.02) benign(0.123) TCGA-DX-AB2E-01 11 27114884 27114884 G A BBOX1 Silent p.R168R 0.08 TCGA-DX-AB2E-01 11 27362242 27362242 C T CCDC34 Splice_Site p.X303_splice 0.49 TCGA-DX-AB2E-01 11 27678795 27678795 G A BDNF 3'UTR 0.16 TCGA-DX-AB2E-01 11 30974057 30974057 C T DCDC1 Missense_Mutation p.E884K 0.20 tolerated(0.13) possibly_damaging(0.486) TCGA-DX-AB2E-01 11 32460385 32460385 G A WT1 5'Flank 0.48 TCGA-DX-AB2E-01 11 36511818 36511818 A T TRAF6 Missense_Mutation p.F380Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2E-01 11 4675444 4675444 A G OR51E1 3'UTR 0.55 TCGA-DX-AB2E-01 11 47303157 47303157 C T MADD Missense_Mutation p.P441L 0.58 deleterious(0.05) benign(0.417) TCGA-DX-AB2E-01 11 47436601 47436601 C T SLC39A13 Missense_Mutation p.P311S 0.74 tolerated_low_confidence(1) benign(0.005) TCGA-DX-AB2E-01 11 4929472 4929472 C T OR51A7 Silent p.Y291Y 0.14 TCGA-DX-AB2E-01 11 4936114 4936114 C T OR51G2 Missense_Mutation p.M260I 0.15 tolerated(0.15) benign(0.2) TCGA-DX-AB2E-01 11 494993 494993 G A RNH1 Silent p.A396A 0.46 TCGA-DX-AB2E-01 11 4967671 4967671 G A OR51A4 Silent p.T220T 0.47 TCGA-DX-AB2E-01 11 5080598 5080598 A G OR52E2 Missense_Mutation p.F87S 0.47 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2E-01 11 5142855 5142855 C T OR52A4 RNA 0.53 TCGA-DX-AB2E-01 11 51515496 51515496 C T OR4C46 Missense_Mutation p.S72F 0.71 deleterious_low_confidence(0.01) benign(0.114) TCGA-DX-AB2E-01 11 55135651 55135651 G A OR4A15 Missense_Mutation p.D98N 0.49 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-DX-AB2E-01 11 55322242 55322242 C T OR4C15 Missense_Mutation p.L154F 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.885) TCGA-DX-AB2E-01 11 55587118 55587118 G A OR5D18 Missense_Mutation p.D5N 0.22 tolerated(0.05) benign(0.001) TCGA-DX-AB2E-01 11 55872770 55872770 G A OR8H2 Silent p.A84A 0.08 TCGA-DX-AB2E-01 11 57327819 57327819 G A UBE2L6 Silent p.L38L 0.32 TCGA-DX-AB2E-01 11 58385796 58385796 C T ZFP91 3'UTR 0.37 TCGA-DX-AB2E-01 11 58607015 58607015 G A GLYATL2 Missense_Mutation p.S24F 0.10 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 11 5862326 5862326 C T OR52E6 Missense_Mutation p.D268N 0.09 tolerated(1) benign(0.001) TCGA-DX-AB2E-01 11 59980660 59980660 C T MS4A4E Intron 0.12 TCGA-DX-AB2E-01 11 61026600 61026600 C T VWCE Silent p.T805T 0.52 TCGA-DX-AB2E-01 11 611813 611813 C T PHRF1 3'UTR 0.19 TCGA-DX-AB2E-01 11 6129676 6129676 C T OR56B4 Missense_Mutation p.S223F 0.23 deleterious(0.01) possibly_damaging(0.548) TCGA-DX-AB2E-01 11 61490358 61490358 C T DAGLA Missense_Mutation p.A112V 0.57 deleterious(0.04) probably_damaging(0.989) TCGA-DX-AB2E-01 11 63277347 63277347 C T LGALS12 Missense_Mutation p.A180V 0.57 tolerated(0.08) benign(0.044) TCGA-DX-AB2E-01 11 64030237 64030237 C T PLCB3 Missense_Mutation p.S771L 0.10 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2E-01 11 64081798 64081798 C T ESRRA Missense_Mutation p.P177L 0.13 tolerated(0.61) benign(0.001) TCGA-DX-AB2E-01 11 64358943 64358943 G A SLC22A12 5'UTR 0.31 TCGA-DX-AB2E-01 11 64514753 64514753 G A PYGM Missense_Mutation p.S752F 0.34 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2E-01 11 64717233 64717233 G A C11orf85 Missense_Mutation p.H111Y 0.32 tolerated(0.1) benign(0.291) TCGA-DX-AB2E-01 11 64717234 64717234 G A C11orf85 Silent p.F110F 0.32 TCGA-DX-AB2E-01 11 64785863 64785863 C T ARL2 Silent p.T31T 0.31 TCGA-DX-AB2E-01 11 65266996 65266996 C G MALAT1 RNA 0.36 TCGA-DX-AB2E-01 11 65266997 65266997 C T MALAT1 RNA 0.36 TCGA-DX-AB2E-01 11 65793927 65793927 C A CATSPER1 5'UTR 0.47 TCGA-DX-AB2E-01 11 65793928 65793928 C A CATSPER1 5'UTR 0.47 TCGA-DX-AB2E-01 11 66055329 66055329 T C YIF1A Missense_Mutation p.Y101C 0.36 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 11 66325218 66325218 G A CTD-3074O7.2 3'Flank 0.50 TCGA-DX-AB2E-01 11 66612482 66612482 C T RCE1 Silent p.F198F 0.53 TCGA-DX-AB2E-01 11 67131746 67131746 G A CLCF1 3'UTR 0.21 TCGA-DX-AB2E-01 11 67203474 67203474 G A PTPRCAP Silent p.H117H 0.29 TCGA-DX-AB2E-01 11 6816613 6816613 G A OR6A2 Silent p.F109F 0.61 TCGA-DX-AB2E-01 11 70666654 70666654 G A SHANK2 Silent p.C437C 0.27 TCGA-DX-AB2E-01 11 71152341 71152341 G A DHCR7 Silent p.I186I 0.43 TCGA-DX-AB2E-01 11 71164258 71164258 G A NADSYN1 5'UTR 0.12 TCGA-DX-AB2E-01 11 71260438 71260438 G A KRTAP5-9 3'UTR 0.58 TCGA-DX-AB2E-01 11 73676073 73676073 C T DNAJB13 Missense_Mutation p.S162F 0.37 deleterious(0) benign(0.277) TCGA-DX-AB2E-01 11 73712212 73712212 G A UCP3 3'UTR 0.23 TCGA-DX-AB2E-01 11 74207928 74207928 C A LIPT2 5'Flank 0.40 TCGA-DX-AB2E-01 11 74207929 74207929 C T LIPT2 5'Flank 0.42 TCGA-DX-AB2E-01 11 74700062 74700062 G A NEU3 5'UTR 0.43 TCGA-DX-AB2E-01 11 75826996 75826996 C T UVRAG Missense_Mutation p.P445L 0.44 deleterious(0) possibly_damaging(0.809) TCGA-DX-AB2E-01 11 76508359 76508359 C T TSKU 3'UTR 0.21 TCGA-DX-AB2E-01 11 76825457 76825457 G A CAPN5 Missense_Mutation p.G226S 0.46 tolerated(0.22) probably_damaging(1) TCGA-DX-AB2E-01 11 76893564 76893564 C T MYO7A Silent p.I1068I 0.16 TCGA-DX-AB2E-01 11 7723023 7723023 C T OVCH2 Splice_Site p.X187_splice 0.29 TCGA-DX-AB2E-01 11 78387281 78387281 G A TENM4 Silent p.I1804I 0.47 TCGA-DX-AB2E-01 11 78440565 78440565 G A TENM4 Missense_Mutation p.L1088F 0.20 deleterious(0) probably_damaging(0.959) TCGA-DX-AB2E-01 11 7960409 7960409 C T OR10A3 Missense_Mutation p.R220Q 0.36 tolerated(0.09) benign(0.027) TCGA-DX-AB2E-01 11 85374250 85374250 C T CREBZF 3'UTR 0.12 TCGA-DX-AB2E-01 11 8639414 8639414 G A TRIM66 3'UTR 0.41 TCGA-DX-AB2E-01 11 87908394 87908394 C T RAB38 Nonsense_Mutation p.W53* 0.49 TCGA-DX-AB2E-01 11 92532163 92532163 A G FAT3 Missense_Mutation p.N1995S 0.62 benign(0.001) TCGA-DX-AB2E-01 11 99426892 99426892 G A CNTN5 5'UTR 0.50 TCGA-DX-AB2E-01 12 105515911 105515911 C T KIAA1033 Silent p.V227V 0.23 TCGA-DX-AB2E-01 12 106633618 106633618 G A CKAP4 Silent p.L331L 0.25 TCGA-DX-AB2E-01 12 106633620 106633620 G A CKAP4 Missense_Mutation p.L331F 0.24 tolerated(0.05) probably_damaging(0.999) TCGA-DX-AB2E-01 12 107155897 107155897 G A RFX4 3'Flank 0.32 TCGA-DX-AB2E-01 12 107371875 107371875 T C MTERFD3 Silent p.K206K 0.22 TCGA-DX-AB2E-01 12 108938998 108938998 A - SART3 Frame_Shift_Del p.S216Lfs*6 0.28 TCGA-DX-AB2E-01 12 108939020 108939020 G A SART3 Silent p.S208S 0.36 TCGA-DX-AB2E-01 12 108939021 108939021 G A SART3 Missense_Mutation p.S208F 0.34 deleterious(0.01) probably_damaging(0.927) TCGA-DX-AB2E-01 12 109181226 109181226 G A SSH1 3'UTR 0.30 TCGA-DX-AB2E-01 12 109313509 109313509 C T SVOP Missense_Mutation p.A339T 0.11 tolerated(0.05) possibly_damaging(0.845) TCGA-DX-AB2E-01 12 10962049 10962049 G A TAS2R9 Missense_Mutation p.T209I 0.37 tolerated(0.22) benign(0.01) TCGA-DX-AB2E-01 12 110784761 110784761 C T ATP2A2 3'UTR 0.31 TCGA-DX-AB2E-01 12 117365893 117365893 T C FBXW8 Silent p.F128F 0.19 TCGA-DX-AB2E-01 12 117718556 117718556 C T NOS1 Missense_Mutation p.D500N 0.34 deleterious(0) probably_damaging(0.994) TCGA-DX-AB2E-01 12 117723054 117723054 C T NOS1 Silent p.G458G 0.18 TCGA-DX-AB2E-01 12 119866561 119866561 G A CCDC60 Missense_Mutation p.R55Q 0.18 tolerated(0.1) probably_damaging(0.917) TCGA-DX-AB2E-01 12 119966427 119966427 G A CCDC60 Missense_Mutation p.E413K 0.32 deleterious(0) possibly_damaging(0.687) TCGA-DX-AB2E-01 12 122958192 122958192 G A ZCCHC8 Missense_Mutation p.P659L 0.37 tolerated(0.26) benign(0.004) TCGA-DX-AB2E-01 12 124069230 124069230 C T TMED2 Missense_Mutation p.A16V 0.15 tolerated(0.31) unknown(0) TCGA-DX-AB2E-01 12 124069231 124069231 C T TMED2 Silent p.A16A 0.15 TCGA-DX-AB2E-01 12 124363846 124363846 G A DNAH10 Missense_Mutation p.R2685K 0.12 probably_damaging(0.998) TCGA-DX-AB2E-01 12 124498767 124498767 C T ZNF664 3'UTR 0.33 TCGA-DX-AB2E-01 12 124826424 124826424 C T NCOR2 Silent p.R1711R 0.35 TCGA-DX-AB2E-01 12 129100730 129100730 G A TMEM132C Missense_Mutation p.M385I 0.30 tolerated(0.6) benign(0.006) TCGA-DX-AB2E-01 12 129190240 129190240 G A TMEM132C Silent p.E909E 0.23 TCGA-DX-AB2E-01 12 129190241 129190241 G A TMEM132C Missense_Mutation p.E910K 0.23 deleterious(0.05) benign(0.287) TCGA-DX-AB2E-01 12 130648308 130648308 C T FZD10 Missense_Mutation p.S274F 0.20 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 12 130926493 130926493 C T RIMBP2 Silent p.K451K 0.34 TCGA-DX-AB2E-01 12 132551345 132551345 G A EP400 Silent p.Q2860Q 0.32 TCGA-DX-AB2E-01 12 132551346 132551346 G A EP400 Missense_Mutation p.A2861T 0.30 probably_damaging(0.917) TCGA-DX-AB2E-01 12 132905601 132905601 G A RP13-895J2.7 5'Flank 0.38 TCGA-DX-AB2E-01 12 13715942 13715942 C T GRIN2B Silent p.T1410T 0.30 TCGA-DX-AB2E-01 12 18801099 18801099 T C PIK3C2G 3'UTR 0.46 TCGA-DX-AB2E-01 12 18847964 18847964 C T PLCZ1 Silent p.G447G 0.22 TCGA-DX-AB2E-01 12 21968812 21968812 G A ABCC9 Missense_Mutation p.P1303L 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-DX-AB2E-01 12 2786885 2786885 C T CACNA1C Intron 0.17 TCGA-DX-AB2E-01 12 29423519 29423519 C T FAR2 Missense_Mutation p.P46L 0.21 deleterious(0.01) possibly_damaging(0.737) TCGA-DX-AB2E-01 12 2968197 2968197 C T FOXM1 Silent p.G671G 0.38 TCGA-DX-AB2E-01 12 31236933 31236933 C T DDX11 Missense_Mutation p.P111S 0.41 deleterious(0.04) probably_damaging(0.982) TCGA-DX-AB2E-01 12 32134658 32134658 C T KIAA1551 Missense_Mutation p.P257S 0.27 deleterious(0.05) benign(0.104) TCGA-DX-AB2E-01 12 32134659 32134659 C T KIAA1551 Missense_Mutation p.P257L 0.27 tolerated(0.11) benign(0.004) TCGA-DX-AB2E-01 12 3702694 3702694 G A PRMT8 3'UTR 0.39 TCGA-DX-AB2E-01 12 43817354 43817354 G A ADAMTS20 Intron 0.45 TCGA-DX-AB2E-01 12 46300103 46300103 C T ARID2 3'UTR 0.26 TCGA-DX-AB2E-01 12 46357927 46357927 G A SCAF11 Silent p.T8T 0.21 TCGA-DX-AB2E-01 12 47173580 47173580 G A SLC38A4 Missense_Mutation p.S214L 0.29 deleterious(0) probably_damaging(0.993) TCGA-DX-AB2E-01 12 47470268 47470268 A T AMIGO2 3'UTR 0.19 TCGA-DX-AB2E-01 12 4848348 4848348 C T GALNT8 Missense_Mutation p.P177S 0.29 tolerated(0.22) benign(0.043) TCGA-DX-AB2E-01 12 51685941 51685941 C T BIN2 Missense_Mutation p.E317K 0.22 tolerated(1) benign(0.001) TCGA-DX-AB2E-01 12 52470782 52470782 C T C12orf44 Silent p.I155I 0.21 TCGA-DX-AB2E-01 12 52758847 52758847 G A KRT85 Silent p.I176I 0.28 TCGA-DX-AB2E-01 12 53205637 53205637 C T KRT4 Missense_Mutation p.R196K 0.25 deleterious(0.03) benign(0.058) TCGA-DX-AB2E-01 12 53427672 53427672 C T EIF4B Silent p.S354S 0.25 TCGA-DX-AB2E-01 12 53910391 53910391 G A ATF7 3'UTR 0.36 TCGA-DX-AB2E-01 12 54104939 54104939 G A CALCOCO1 3'Flank 0.33 TCGA-DX-AB2E-01 12 54104940 54104940 G A CALCOCO1 3'Flank 0.33 TCGA-DX-AB2E-01 12 54971042 54971042 C T PDE1B Missense_Mutation p.S514F 0.22 deleterious(0.02) possibly_damaging(0.831) TCGA-DX-AB2E-01 12 55356787 55356787 G A TESPA1 Missense_Mutation p.R299W 0.29 deleterious(0) probably_damaging(0.949) TCGA-DX-AB2E-01 12 55420286 55420286 G A NEUROD4 Missense_Mutation p.M21I 0.26 tolerated(0.25) benign(0) TCGA-DX-AB2E-01 12 55524235 55524235 C T OR9K2 Missense_Mutation p.S228L 0.33 tolerated(0.09) benign(0.014) TCGA-DX-AB2E-01 12 55688164 55688164 G A OR6C6 Missense_Mutation p.P285S 0.26 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-DX-AB2E-01 12 55688710 55688710 G A OR6C6 Missense_Mutation p.L103F 0.32 tolerated_low_confidence(0.31) benign(0.008) TCGA-DX-AB2E-01 12 55795213 55795213 G A OR6C65 Missense_Mutation p.E301K 0.27 tolerated_low_confidence(0.07) benign(0.001) TCGA-DX-AB2E-01 12 55846090 55846090 C T OR6C2 Silent p.L31L 0.22 TCGA-DX-AB2E-01 12 56524694 56524694 G A ESYT1 Silent p.V184V 0.24 TCGA-DX-AB2E-01 12 56814777 56814777 C T TIMELESS Missense_Mutation p.E1004K 0.33 tolerated(0.58) benign(0.003) TCGA-DX-AB2E-01 12 56995526 56995526 G A BAZ2A Missense_Mutation p.P1294L 0.50 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 12 56999794 56999794 C T BAZ2A Silent p.K773K 0.21 TCGA-DX-AB2E-01 12 57033081 57033081 G A ATP5B Missense_Mutation p.S433F 0.35 deleterious_low_confidence(0.03) benign(0.116) TCGA-DX-AB2E-01 12 57108172 57108172 T A NACA Missense_Mutation p.S780C 0.34 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DX-AB2E-01 12 6436547 6436547 G A PLEKHG6 Missense_Mutation p.G600R 0.21 tolerated(0.07) benign(0.015) TCGA-DX-AB2E-01 12 64895667 64895667 G A TBK1 3'UTR 0.24 TCGA-DX-AB2E-01 12 65230342 65230342 G A TBC1D30 Missense_Mutation p.D223N 0.22 deleterious(0) probably_damaging(0.994) TCGA-DX-AB2E-01 12 6560696 6560696 G A CD27 3'UTR 0.24 TCGA-DX-AB2E-01 12 6636085 6636085 C T NCAPD2 Silent p.F921F 0.26 TCGA-DX-AB2E-01 12 69652823 69652823 C T CPSF6 Missense_Mutation p.P383L 0.54 tolerated(0.61) probably_damaging(0.981) TCGA-DX-AB2E-01 12 7509976 7509976 C T CD163L1 Intron 0.28 TCGA-DX-AB2E-01 12 7528586 7528586 C T CD163L1 Missense_Mutation p.G799E 0.37 deleterious(0.04) probably_damaging(0.919) TCGA-DX-AB2E-01 12 7640497 7640497 C T CD163 Missense_Mutation p.G536E 0.28 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2E-01 12 78444660 78444660 G A NAV3 Missense_Mutation p.R750Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 12 78513686 78513686 G A NAV3 Missense_Mutation p.G1237E 0.47 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2E-01 12 79843485 79843485 G A SYT1 3'UTR 0.42 TCGA-DX-AB2E-01 12 81111151 81111151 C T MYF5 Silent p.F103F 0.23 TCGA-DX-AB2E-01 12 81283053 81283053 C G LIN7A Missense_Mutation p.E60Q 0.33 deleterious(0.02) benign(0.24) TCGA-DX-AB2E-01 12 81536978 81536978 A G ACSS3 Silent p.E291E 0.34 TCGA-DX-AB2E-01 12 86198702 86198702 C T RASSF9 Silent p.K362K 0.21 TCGA-DX-AB2E-01 12 8673727 8673727 C A CLEC4D Missense_Mutation p.H170N 0.15 deleterious(0) benign(0.156) TCGA-DX-AB2E-01 12 9266087 9266087 C T A2M Missense_Mutation p.G47S 0.45 tolerated(0.27) benign(0.009) TCGA-DX-AB2E-01 12 96948514 96948514 G A C12orf55 Missense_Mutation p.D782N 0.40 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2E-01 12 99007548 99007548 C G IKBIP Missense_Mutation p.D290H 0.32 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 12 99007549 99007549 C T IKBIP Silent p.K289K 0.33 TCGA-DX-AB2E-01 13 103421774 103421774 G A TEX30 Missense_Mutation p.P45S 0.40 tolerated(0.62) benign(0.009) TCGA-DX-AB2E-01 13 107142106 107142106 A T EFNB2 3'UTR 0.27 TCGA-DX-AB2E-01 13 108861597 108861597 G C LIG4 Missense_Mutation p.P674A 0.10 tolerated(0.06) benign(0.006) TCGA-DX-AB2E-01 13 113139467 113139467 G A TUBGCP3 3'UTR 0.49 TCGA-DX-AB2E-01 13 114152660 114152660 G A TMCO3 Missense_Mutation p.E150K 0.18 deleterious(0) possibly_damaging(0.878) TCGA-DX-AB2E-01 13 21373400 21373400 G A XPO4 Silent p.F742F 0.33 TCGA-DX-AB2E-01 13 21548974 21548974 G A LATS2 3'UTR 0.34 TCGA-DX-AB2E-01 13 25912826 25912826 T A NUPL1 Missense_Mutation p.F529L 0.35 tolerated(0.2) probably_damaging(0.99) TCGA-DX-AB2E-01 13 26501284 26501284 A G ATP8A2 Intron 0.45 TCGA-DX-AB2E-01 13 28195927 28195927 G A POLR1D 5'UTR 0.40 TCGA-DX-AB2E-01 13 28196110 28196110 C T POLR1D 5'UTR 0.29 TCGA-DX-AB2E-01 13 28562733 28562733 G A URAD Silent p.F14F 0.33 TCGA-DX-AB2E-01 13 28942759 28942759 G A FLT1 Intron 0.28 TCGA-DX-AB2E-01 13 29600062 29600062 G A MTUS2 Silent p.Q419Q 0.30 TCGA-DX-AB2E-01 13 30061766 30061766 C T MTUS2 Intron 0.57 TCGA-DX-AB2E-01 13 32698812 32698812 A G FRY Missense_Mutation p.K210R 0.26 tolerated(0.56) benign(0.045) TCGA-DX-AB2E-01 13 32798510 32798510 G A FRY Missense_Mutation p.G1635E 0.35 tolerated(0.51) benign(0.284) TCGA-DX-AB2E-01 13 32886059 32886059 C T ZAR1L Missense_Mutation p.E2K 0.19 deleterious(0.01) probably_damaging(0.914) TCGA-DX-AB2E-01 13 33700362 33700362 G A STARD13 Silent p.F646F 0.19 TCGA-DX-AB2E-01 13 33703736 33703736 C T STARD13 Missense_Mutation p.G360R 0.29 deleterious(0.02) possibly_damaging(0.68) TCGA-DX-AB2E-01 13 33704189 33704189 G A STARD13 Missense_Mutation p.R209C 0.50 tolerated(0.18) probably_damaging(0.957) TCGA-DX-AB2E-01 13 36167203 36167203 C T NBEA Intron 0.67 TCGA-DX-AB2E-01 13 36748880 36748880 G A SOHLH2 Silent p.I333I 0.36 TCGA-DX-AB2E-01 13 52598149 52598149 G A ALG11 Missense_Mutation p.E95K 0.23 tolerated(0.3) benign(0.001) TCGA-DX-AB2E-01 13 52603205 52603205 C T UTP14C Silent p.L89L 0.26 TCGA-DX-AB2E-01 13 53624759 53624759 G A OLFM4 Silent p.G462G 0.30 TCGA-DX-AB2E-01 13 61987573 61987573 T C PCDH20 Missense_Mutation p.E220G 0.50 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 13 61987575 61987575 C T PCDH20 Silent p.P219P 0.56 TCGA-DX-AB2E-01 13 64413265 64413265 A G RP11-394A14.2 RNA 0.31 TCGA-DX-AB2E-01 13 77457920 77457920 A C KCTD12 3'UTR 0.34 TCGA-DX-AB2E-01 13 78130762 78130762 G A SCEL Silent p.R25R 0.37 TCGA-DX-AB2E-01 13 92797179 92797179 G A GPC5 Missense_Mutation p.D500N 0.26 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 13 95055375 95055375 G A GPC6 Silent p.R524R 0.24 TCGA-DX-AB2E-01 14 101349282 101349282 G A RTL1 Missense_Mutation p.P615L 0.55 deleterious(0) benign(0.274) TCGA-DX-AB2E-01 14 101435286 101435286 G A SNORD114-12 RNA 0.46 TCGA-DX-AB2E-01 14 105185251 105185251 C T INF2 3'UTR 0.36 TCGA-DX-AB2E-01 14 106174209 106174209 C T IGHA1 Missense_Mutation p.E194K 0.35 deleterious(0.01) possibly_damaging(0.76) TCGA-DX-AB2E-01 14 106829737 106829737 C T IGHV4-34 Missense_Mutation p.E76K 0.49 tolerated(0.32) benign(0.003) TCGA-DX-AB2E-01 14 107048815 107048815 C T IGHV3-53 Missense_Mutation p.V69I 0.10 tolerated_low_confidence(0.39) benign(0.002) TCGA-DX-AB2E-01 14 20692109 20692109 C T OR11H6 Silent p.L81L 0.52 TCGA-DX-AB2E-01 14 21512324 21512324 G A RNASE7 3'UTR 0.19 TCGA-DX-AB2E-01 14 22265544 22265544 G A TRAV8-1 5'UTR 0.17 TCGA-DX-AB2E-01 14 22314971 22314971 G A TRAV8-2 Missense_Mutation p.E10K 0.18 tolerated(0.89) benign(0.065) TCGA-DX-AB2E-01 14 23991827 23991827 C T ZFHX2 Missense_Mutation p.G2355R 0.37 unknown(0) TCGA-DX-AB2E-01 14 23994312 23994312 G A ZFHX2 Silent p.F1613F 0.44 TCGA-DX-AB2E-01 14 26916618 26916618 C T NOVA1 3'UTR 0.39 TCGA-DX-AB2E-01 14 26949194 26949194 G A NOVA1 Missense_Mutation p.R146C 0.15 deleterious(0) unknown(0) TCGA-DX-AB2E-01 14 28734133 28734142 AAATATTCCC - BNIP3P1 RNA 0.19 TCGA-DX-AB2E-01 14 31588985 31588985 G A HECTD1 Missense_Mutation p.P1776S 0.44 deleterious(0) probably_damaging(0.979) TCGA-DX-AB2E-01 14 32586408 32586408 T A ARHGAP5 Missense_Mutation p.F1260L 0.20 deleterious(0.01) benign(0.334) TCGA-DX-AB2E-01 14 33300019 33300019 G A AKAP6 3'UTR 0.21 TCGA-DX-AB2E-01 14 35498507 35498507 C T SRP54 3'UTR 0.25 TCGA-DX-AB2E-01 14 37131029 37131029 C T PAX9 5'Flank 0.28 TCGA-DX-AB2E-01 14 37131030 37131030 C T PAX9 5'Flank 0.28 TCGA-DX-AB2E-01 14 38061514 38061514 C T FOXA1 Missense_Mutation p.A159T 0.09 tolerated(0.19) benign(0.039) TCGA-DX-AB2E-01 14 38679638 38679638 G A SSTR1 Silent p.E348E 0.21 TCGA-DX-AB2E-01 14 38725371 38725371 C T CLEC14A 5'UTR 0.51 TCGA-DX-AB2E-01 14 51206166 51206166 G A NIN Missense_Mutation p.H1830Y 0.59 tolerated(0.12) possibly_damaging(0.628) TCGA-DX-AB2E-01 14 52194751 52194751 C T FRMD6 3'UTR 0.63 TCGA-DX-AB2E-01 14 56137519 56137519 G A KTN1 Missense_Mutation p.E1114K 0.47 tolerated(0.14) benign(0.06) TCGA-DX-AB2E-01 14 59112874 59112874 G A DACT1 Silent p.Q511Q 0.36 TCGA-DX-AB2E-01 14 60592362 60592362 C T PCNXL4 Silent p.L796L 0.48 TCGA-DX-AB2E-01 14 60712563 60712563 C T PPM1A 5'UTR 0.51 TCGA-DX-AB2E-01 14 63246479 63246479 C T KCNH5 Silent p.R662R 0.28 TCGA-DX-AB2E-01 14 63416772 63416772 C T KCNH5 Intron 0.44 TCGA-DX-AB2E-01 14 64153115 64153115 G A SGPP1 Missense_Mutation p.P345L 0.13 tolerated(0.05) possibly_damaging(0.606) TCGA-DX-AB2E-01 14 64153116 64153116 G A SGPP1 Missense_Mutation p.P345S 0.13 deleterious(0.01) probably_damaging(0.978) TCGA-DX-AB2E-01 14 64988779 64988779 C T ZBTB1 Missense_Mutation p.P186L 0.38 tolerated(0.11) possibly_damaging(0.617) TCGA-DX-AB2E-01 14 65008993 65008993 C T HSPA2 Nonsense_Mutation p.Q476* 0.45 TCGA-DX-AB2E-01 14 65240025 65240025 C T SPTB Silent p.R1697R 0.47 TCGA-DX-AB2E-01 14 66209656 66209656 C T FUT8 3'UTR 0.42 TCGA-DX-AB2E-01 14 68249851 68249851 G A ZFYVE26 Missense_Mutation p.R1340C 0.16 tolerated(0.07) benign(0.001) TCGA-DX-AB2E-01 14 71518660 71518660 C T PCNX Missense_Mutation p.P1503L 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB2E-01 14 73727967 73727967 C T PAPLN Missense_Mutation p.P710L 0.56 deleterious(0) probably_damaging(0.991) TCGA-DX-AB2E-01 14 74707946 74707946 G A VSX2 Silent p.K144K 0.52 TCGA-DX-AB2E-01 14 74756193 74756193 G A ABCD4 Silent p.P483P 0.21 TCGA-DX-AB2E-01 14 74756194 74756194 G A ABCD4 Missense_Mutation p.P483L 0.21 deleterious(0) benign(0.026) TCGA-DX-AB2E-01 14 74824866 74824866 G A VRTN Silent p.G460G 0.43 TCGA-DX-AB2E-01 14 74971722 74971722 C T LTBP2 Missense_Mutation p.G1445R 0.22 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 14 76107368 76107368 G T FLVCR2 Missense_Mutation p.G436C 0.41 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2E-01 14 76620781 76620781 G A GPATCH2L Nonsense_Mutation p.W25* 0.47 TCGA-DX-AB2E-01 14 77242323 77242323 C T VASH1 Silent p.L207L 0.27 TCGA-DX-AB2E-01 14 77292895 77292895 G A C14orf166B Silent p.R19R 0.37 TCGA-DX-AB2E-01 14 77323731 77323731 G A C14orf166B Silent p.L339L 0.48 TCGA-DX-AB2E-01 14 77930948 77930948 C T AHSA1 Silent p.T160T 0.25 TCGA-DX-AB2E-01 14 78392116 78392116 G A ADCK1 Missense_Mutation p.E340K 0.11 deleterious(0.01) benign(0.022) TCGA-DX-AB2E-01 14 81837492 81837492 G A STON2 Silent p.S137S 0.60 TCGA-DX-AB2E-01 14 85995923 85995923 G A FLRT2 5'Flank 0.60 TCGA-DX-AB2E-01 14 88729796 88729796 G A KCNK10 Missense_Mutation p.S51F 0.21 deleterious_low_confidence(0) possibly_damaging(0.506) TCGA-DX-AB2E-01 14 90263658 90263658 G A EFCAB11 Nonsense_Mutation p.R141* 0.38 TCGA-DX-AB2E-01 14 91701269 91701269 G A GPR68 Silent p.S42S 0.36 TCGA-DX-AB2E-01 14 91924584 91924584 A T SMEK1 3'UTR 0.48 TCGA-DX-AB2E-01 14 92058283 92058283 C T CATSPERB Missense_Mutation p.D925N 0.27 tolerated(0.47) benign(0.004) TCGA-DX-AB2E-01 14 92058305 92058305 C T CATSPERB Silent p.R917R 0.36 TCGA-DX-AB2E-01 14 93694116 93694116 C T UBR7 3'UTR 0.20 TCGA-DX-AB2E-01 14 94756286 94756286 C T SERPINA10 Silent p.G215G 0.46 TCGA-DX-AB2E-01 14 94849516 94849516 G T SERPINA1 Missense_Mutation p.P20H 0.22 tolerated(0.08) probably_damaging(0.95) TCGA-DX-AB2E-01 14 95085653 95085653 G A SERPINA3 Silent p.R255R 0.36 TCGA-DX-AB2E-01 14 95088710 95088710 C T SERPINA3 Missense_Mutation p.S317F 0.44 deleterious(0) probably_damaging(0.954) TCGA-DX-AB2E-01 14 97018886 97018886 A G PAPOLA Missense_Mutation p.N531D 0.06 tolerated(0.32) benign(0.005) TCGA-DX-AB2E-01 14 99637460 99637460 C T BCL11B 3'UTR 0.21 TCGA-DX-AB2E-01 15 101605848 101605848 G A LRRK1 Missense_Mutation p.V1736I 0.35 tolerated(0.69) benign(0.002) TCGA-DX-AB2E-01 15 20876519 20876519 C T NBEAP1 RNA 0.17 TCGA-DX-AB2E-01 15 22368906 22368906 G A OR4M2 Missense_Mutation p.E111K 0.06 tolerated(0.06) probably_damaging(0.997) TCGA-DX-AB2E-01 15 23326283 23326283 C T HERC2P2 RNA 0.46 TCGA-DX-AB2E-01 15 23686589 23686589 C T GOLGA6L2 Missense_Mutation p.E345K 0.41 possibly_damaging(0.486) TCGA-DX-AB2E-01 15 23890900 23890900 G A MAGEL2 Missense_Mutation p.P61S 0.22 tolerated_low_confidence(0.12) benign(0.03) TCGA-DX-AB2E-01 15 24920852 24920852 T C NPAP1 5'UTR 0.24 TCGA-DX-AB2E-01 15 24925555 24925555 C T NPAP1 3'UTR 0.26 TCGA-DX-AB2E-01 15 25429452 25429452 T C SNORD115-10 5'Flank 0.19 TCGA-DX-AB2E-01 15 25438473 25438473 G A SNORD115-11 3'Flank 0.49 TCGA-DX-AB2E-01 15 25463853 25463853 G A SNORD115-27 5'Flank 0.10 TCGA-DX-AB2E-01 15 33928630 33928630 G A RYR3 Silent p.G1145G 0.54 TCGA-DX-AB2E-01 15 34042484 34042484 C T RYR3 Missense_Mutation p.S2799F 0.46 possibly_damaging(0.601) TCGA-DX-AB2E-01 15 38229552 38229552 G A TMCO5A Silent p.R90R 0.50 TCGA-DX-AB2E-01 15 41271769 41271769 G A INO80 3'UTR 0.46 TCGA-DX-AB2E-01 15 43045091 43045091 C T TTBK2 Missense_Mutation p.E785K 0.52 tolerated_low_confidence(0.09) benign(0.005) TCGA-DX-AB2E-01 15 43767783 43767783 A G TP53BP1 Silent p.L355L 0.69 TCGA-DX-AB2E-01 15 43888789 43888789 C T CKMT1B Intron 0.13 TCGA-DX-AB2E-01 15 45467514 45467514 G A SHF Silent p.P185P 0.47 TCGA-DX-AB2E-01 15 48493637 48493637 G A CTXN2 Missense_Mutation p.R47Q 0.54 deleterious(0.01) probably_damaging(0.988) TCGA-DX-AB2E-01 15 48499905 48499905 C T SLC12A1 5'UTR 0.62 TCGA-DX-AB2E-01 15 51773074 51773074 G A DMXL2 Missense_Mutation p.L2077F 0.48 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 15 52357332 52357332 A - MAPK6 3'UTR 0.36 TCGA-DX-AB2E-01 15 52567795 52567795 C T MYO5C Silent p.V190V 0.47 TCGA-DX-AB2E-01 15 57731263 57731263 T - CGNL1 Frame_Shift_Del p.L356* 0.29 TCGA-DX-AB2E-01 15 64452346 64452346 G A PPIB Silent p.F100F 0.29 TCGA-DX-AB2E-01 15 74588137 74588137 C T CCDC33 Missense_Mutation p.P380S 0.24 deleterious(0) probably_damaging(0.932) TCGA-DX-AB2E-01 15 75090622 75090622 C T CSK 5'UTR 0.40 TCGA-DX-AB2E-01 15 75090623 75090623 C T CSK 5'UTR 0.42 TCGA-DX-AB2E-01 15 78393345 78393345 C T SH2D7 Silent p.N250N 0.16 TCGA-DX-AB2E-01 15 79058437 79058437 C T ADAMTS7 Silent p.L1272L 0.31 TCGA-DX-AB2E-01 15 79341923 79341923 G A RASGRF1 Missense_Mutation p.S180F 0.50 tolerated(0.05) benign(0.382) TCGA-DX-AB2E-01 15 83328343 83328343 A T AP3B2 Missense_Mutation p.V1073E 0.17 deleterious(0.01) benign(0.403) TCGA-DX-AB2E-01 15 83328344 83328344 C T AP3B2 Missense_Mutation p.V1073I 0.20 tolerated(0.06) benign(0.097) TCGA-DX-AB2E-01 15 84908564 84908564 C T GOLGA6L4 Missense_Mutation p.P153L 0.16 tolerated(0.09) unknown(0) TCGA-DX-AB2E-01 15 85383923 85383923 C T ALPK3 Silent p.T673T 0.20 TCGA-DX-AB2E-01 15 86791006 86791006 C T AGBL1 Nonsense_Mutation p.R165* 0.32 TCGA-DX-AB2E-01 15 89421151 89421151 C T HAPLN3 3'UTR 0.16 TCGA-DX-AB2E-01 15 89869847 89869847 G T POLG Missense_Mutation p.P570T 0.35 deleterious(0) probably_damaging(0.959) TCGA-DX-AB2E-01 15 91141745 91141745 C T CRTC3 Intron 0.44 TCGA-DX-AB2E-01 15 91292843 91292843 G A BLM Silent p.P115P 0.09 TCGA-DX-AB2E-01 15 91769557 91769557 G A SV2B Missense_Mutation p.G22S 0.15 deleterious_low_confidence(0.04) benign(0.148) TCGA-DX-AB2E-01 15 93528743 93528743 A G CHD2 Missense_Mutation p.S1085G 0.26 tolerated(0.29) benign(0.004) TCGA-DX-AB2E-01 15 93528762 93528762 C A CHD2 Missense_Mutation p.S1091Y 0.24 tolerated(0.06) benign(0.163) TCGA-DX-AB2E-01 15 94945773 94945773 G A MCTP2 Intron 0.36 TCGA-DX-AB2E-01 15 99672568 99672568 G A SYNM Missense_Mutation p.E1334K 0.23 tolerated(0.06) benign(0.021) TCGA-DX-AB2E-01 15 99892629 99892629 G A LRRC28 Silent p.L216L 0.35 TCGA-DX-AB2E-01 15 99892630 99892630 A C LRRC28 Missense_Mutation p.K217Q 0.33 tolerated(0.16) benign(0.007) TCGA-DX-AB2E-01 16 1116292 1116292 C T RP11-161M6.5 RNA 0.29 TCGA-DX-AB2E-01 16 11217640 11217640 G A CLEC16A Silent p.L770L 0.37 TCGA-DX-AB2E-01 16 12662373 12662373 C T SNX29 Missense_Mutation p.P777S 0.35 tolerated_low_confidence(0.13) benign(0.007) TCGA-DX-AB2E-01 16 1279234 1279234 C T TPSB2 Missense_Mutation 0.79 TCGA-DX-AB2E-01 16 1291582 1291582 G A TPSAB1 Silent p.L127L 0.31 TCGA-DX-AB2E-01 16 1390933 1390933 C T BAIAP3 Missense_Mutation p.T175I 0.32 tolerated(0.43) benign(0.008) TCGA-DX-AB2E-01 16 20566767 20566767 C T ACSM2B Missense_Mutation p.M140I 0.32 deleterious(0) possibly_damaging(0.743) TCGA-DX-AB2E-01 16 20935434 20935434 C T LYRM1 Missense_Mutation p.S122F 0.50 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 16 22149817 22149817 C T VWA3A Missense_Mutation p.P759L 0.44 tolerated(0.43) benign(0.002) TCGA-DX-AB2E-01 16 2296868 2296868 G A ECI1 Silent p.L96L 0.25 TCGA-DX-AB2E-01 16 23197733 23197733 C T SCNN1G Silent p.S47S 0.29 TCGA-DX-AB2E-01 16 23382662 23382662 C T SCNN1B Missense_Mutation p.P308L 0.33 deleterious(0) probably_damaging(0.99) TCGA-DX-AB2E-01 16 23436080 23436080 G A COG7 Silent p.L333L 0.42 TCGA-DX-AB2E-01 16 23457242 23457242 G A COG7 Silent p.L70L 0.33 TCGA-DX-AB2E-01 16 23641698 23641698 G A PALB2 Missense_Mutation p.H593Y 0.26 tolerated(0.45) benign(0.022) TCGA-DX-AB2E-01 16 23721500 23721500 C T ERN2 Missense_Mutation p.G148E 0.23 deleterious(0) probably_damaging(0.988) TCGA-DX-AB2E-01 16 24226094 24226094 C T PRKCB Missense_Mutation p.S660F 0.35 deleterious(0) probably_damaging(0.968) TCGA-DX-AB2E-01 16 24373228 24373228 G A CACNG3 3'UTR 0.55 TCGA-DX-AB2E-01 16 27473798 27473798 C T GTF3C1 Silent p.E1978E 0.15 TCGA-DX-AB2E-01 16 279339 279339 G A LUC7L 5'UTR 0.22 TCGA-DX-AB2E-01 16 28502882 28502882 C T CLN3 Splice_Site p.X16_splice 0.48 TCGA-DX-AB2E-01 16 28621451 28621451 C T SULT1A1 5'UTR 0.22 TCGA-DX-AB2E-01 16 30036162 30036162 G A FAM57B 3'UTR 0.50 TCGA-DX-AB2E-01 16 30129061 30129061 C T MAPK3 Silent p.L235L 0.36 TCGA-DX-AB2E-01 16 31434740 31434740 G A ITGAD Missense_Mutation p.G976E 0.40 tolerated(0.47) benign(0.047) TCGA-DX-AB2E-01 16 3350197 3350197 C T TIGD7 Missense_Mutation p.G140R 0.34 deleterious(0.01) benign(0) TCGA-DX-AB2E-01 16 4240904 4240904 C T SRL 3'UTR 0.34 TCGA-DX-AB2E-01 16 4625584 4625584 C T C16orf96 Missense_Mutation p.P368L 0.18 deleterious(0) unknown(0) TCGA-DX-AB2E-01 16 4659013 4659013 G A UBALD1 3'UTR 0.45 TCGA-DX-AB2E-01 16 46781685 46781685 G A MYLK3 Missense_Mutation p.L141F 0.32 deleterious(0) benign(0.28) TCGA-DX-AB2E-01 16 46781686 46781686 G A MYLK3 Silent p.F140F 0.33 TCGA-DX-AB2E-01 16 48173107 48173107 C T ABCC12 Silent p.G266G 0.19 TCGA-DX-AB2E-01 16 50069842 50069842 C A CNEP1R1 3'UTR 0.28 TCGA-DX-AB2E-01 16 5053431 5053431 G A SEC14L5 Missense_Mutation p.G387R 0.39 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 16 51171431 51171431 G A SALL1 Silent p.T1189T 0.26 TCGA-DX-AB2E-01 16 52472462 52472462 C T TOX3 3'UTR 0.26 TCGA-DX-AB2E-01 16 53360865 53360865 C T CHD9 3'UTR 0.37 TCGA-DX-AB2E-01 16 57494561 57494561 C T COQ9 3'UTR 0.41 TCGA-DX-AB2E-01 16 58549393 58549393 G A SETD6 5'UTR 0.47 TCGA-DX-AB2E-01 16 61687910 61687910 C T CDH8 Missense_Mutation p.D668N 0.32 tolerated(0.46) probably_damaging(0.996) TCGA-DX-AB2E-01 16 61935302 61935302 G A CDH8 Nonsense_Mutation p.Q110* 0.40 TCGA-DX-AB2E-01 16 64982569 64982569 G A CDH11 Intron 0.38 TCGA-DX-AB2E-01 16 68405414 68405414 G A SMPD3 Missense_Mutation p.A224V 0.25 tolerated(0.27) benign(0.164) TCGA-DX-AB2E-01 16 70190708 70190708 T C PDPR Missense_Mutation p.Y856H 0.22 tolerated(1) probably_damaging(0.99) TCGA-DX-AB2E-01 16 70211345 70211345 G A CLEC18C Missense_Mutation p.E140K 0.08 tolerated(0.4) benign(0.014) TCGA-DX-AB2E-01 16 70287878 70287878 G A AARS Silent p.L822L 0.30 TCGA-DX-AB2E-01 16 70913257 70913257 A G HYDIN Silent p.L3500L 0.49 TCGA-DX-AB2E-01 16 72830075 72830075 G A ZFHX3 Missense_Mutation p.S2169F 0.65 probably_damaging(0.998) TCGA-DX-AB2E-01 16 75269881 75269881 A G BCAR1 Missense_Mutation p.Y352H 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-DX-AB2E-01 16 75269882 75269882 G A BCAR1 Silent p.V351V 0.28 TCGA-DX-AB2E-01 16 76587337 76587337 C T RP11-58C22.1 Silent p.S8S 0.39 TCGA-DX-AB2E-01 16 77356355 77356355 G A ADAMTS18 Nonsense_Mutation p.R681* 0.40 TCGA-DX-AB2E-01 16 81295770 81295770 C T BCMO1 Missense_Mutation p.P118L 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-DX-AB2E-01 16 82032828 82032828 C T SDR42E1 Missense_Mutation p.R357K 0.36 tolerated(0.43) benign(0.004) TCGA-DX-AB2E-01 16 84070431 84070431 G A SLC38A8 Silent p.Y88Y 0.36 TCGA-DX-AB2E-01 16 84093019 84093019 G A MBTPS1 Missense_Mutation p.R907W 0.24 deleterious(0) probably_damaging(0.958) TCGA-DX-AB2E-01 16 86614310 86614310 G A FOXL1 3'UTR 0.27 TCGA-DX-AB2E-01 16 88643765 88643765 C T ZC3H18 Silent p.S78S 0.45 TCGA-DX-AB2E-01 16 88878283 88878283 C T APRT Missense_Mutation p.V9I 0.62 tolerated(0.27) benign(0.04) TCGA-DX-AB2E-01 16 88878284 88878284 C T APRT Silent p.L8L 0.59 TCGA-DX-AB2E-01 16 88967953 88967953 G A CBFA2T3 Missense_Mutation p.S88F 0.28 tolerated_low_confidence(0.08) possibly_damaging(0.775) TCGA-DX-AB2E-01 16 9916278 9916278 G T GRIN2A Missense_Mutation p.Q671K 0.28 deleterious(0) probably_damaging(0.965) TCGA-DX-AB2E-01 17 11687748 11687748 G A DNAH9 Silent p.L2651L 0.54 TCGA-DX-AB2E-01 17 12493784 12493784 C T LINC00670 RNA 0.74 TCGA-DX-AB2E-01 17 12656030 12656030 C T MYOCD Silent p.F475F 0.45 TCGA-DX-AB2E-01 17 12659837 12659837 G A MYOCD Missense_Mutation p.G722E 0.59 tolerated(0.44) benign(0.316) TCGA-DX-AB2E-01 17 20796722 20796722 G A CCDC144NL Missense_Mutation p.P133L 0.54 deleterious_low_confidence(0.02) possibly_damaging(0.479) TCGA-DX-AB2E-01 17 21911729 21911729 G A RP11-744K17.9 RNA 0.67 TCGA-DX-AB2E-01 17 27015224 27015224 C T SUPT6H Missense_Mutation p.S1041F 0.57 tolerated(0.06) possibly_damaging(0.839) TCGA-DX-AB2E-01 17 27015225 27015225 C T SUPT6H Silent p.S1041S 0.58 TCGA-DX-AB2E-01 17 32966216 32966216 C T TMEM132E 3'UTR 0.57 TCGA-DX-AB2E-01 17 33689777 33689777 C T SLFN11 Missense_Mutation p.M350I 0.69 tolerated(0.11) benign(0.206) TCGA-DX-AB2E-01 17 3470053 3470053 C T SHPK 3'UTR 0.61 TCGA-DX-AB2E-01 17 36882794 36882794 C T MLLT6 3'UTR 0.81 TCGA-DX-AB2E-01 17 37903397 37903397 G A GRB7 3'UTR 0.67 TCGA-DX-AB2E-01 17 38784543 38784543 T A SMARCE1 3'UTR 1.00 TCGA-DX-AB2E-01 17 39783067 39783067 G A KRT17 5'Flank 0.53 TCGA-DX-AB2E-01 17 40091552 40091552 C T TTC25 RNA 0.74 TCGA-DX-AB2E-01 17 40963737 40963737 C T BECN1 Missense_Mutation p.D374N 0.70 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2E-01 17 40963738 40963738 C T BECN1 Silent p.L373L 0.70 TCGA-DX-AB2E-01 17 42154519 42154519 A G HDAC5 3'UTR 0.60 TCGA-DX-AB2E-01 17 42930924 42930924 G A EFTUD2 Silent p.I809I 0.66 TCGA-DX-AB2E-01 17 47788340 47788340 G A FAM117A 3'UTR 0.40 TCGA-DX-AB2E-01 17 48618324 48618324 C T EPN3 Missense_Mutation p.P384S 0.71 tolerated(0.25) benign(0.011) TCGA-DX-AB2E-01 17 55704589 55704589 G A MSI2 Splice_Site p.X218_splice 0.75 TCGA-DX-AB2E-01 17 55704590 55704590 G A MSI2 Missense_Mutation p.G218E 0.79 deleterious(0.01) benign(0.04) TCGA-DX-AB2E-01 17 56431282 56431282 A G RNF43 3'UTR 0.69 TCGA-DX-AB2E-01 17 58524433 58524433 G A APPBP2 3'UTR 0.68 TCGA-DX-AB2E-01 17 65941829 65941829 C T BPTF Silent p.V2335V 0.67 TCGA-DX-AB2E-01 17 6719280 6719280 C T TEKT1 Missense_Mutation p.E120K 0.41 deleterious(0) possibly_damaging(0.7) TCGA-DX-AB2E-01 17 6719281 6719281 C T TEKT1 Silent p.R119R 0.43 TCGA-DX-AB2E-01 17 73601644 73601644 C T MYO15B Missense_Mutation p.A142V 0.73 deleterious(0.04) possibly_damaging(0.735) TCGA-DX-AB2E-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.86 TCGA-DX-AB2E-01 17 76113631 76113631 G A TMC6 Missense_Mutation p.P706S 0.67 tolerated(0.15) benign(0.019) TCGA-DX-AB2E-01 17 79419791 79419791 C T RP11-1055B8.7 Silent p.G1453G 0.62 TCGA-DX-AB2E-01 17 79419792 79419792 C T RP11-1055B8.7 Missense_Mutation p.R1454W 0.62 probably_damaging(0.998) TCGA-DX-AB2E-01 17 80053287 80053287 G A FASN Silent p.S63S 0.71 TCGA-DX-AB2E-01 17 80914630 80914630 G A B3GNTL1 Nonsense_Mutation p.R316* 0.65 TCGA-DX-AB2E-01 18 13734511 13734511 C T RNMT Missense_Mutation p.L156F 0.61 deleterious(0) probably_damaging(0.987) TCGA-DX-AB2E-01 18 14851814 14851814 G A ANKRD30B Missense_Mutation p.E1172K 0.55 tolerated(0.12) benign(0.042) TCGA-DX-AB2E-01 18 21713974 21713974 C T TTC39C 3'Flank 0.61 TCGA-DX-AB2E-01 18 28979506 28979506 G A DSG4 Missense_Mutation p.R426K 0.77 tolerated(0.33) benign(0.331) TCGA-DX-AB2E-01 18 28979507 28979507 G A DSG4 Splice_Site p.X426_splice 0.77 TCGA-DX-AB2E-01 18 29055904 29055904 G A DSG3 Missense_Mutation p.G894E 0.65 tolerated(0.77) benign(0.006) TCGA-DX-AB2E-01 18 31431381 31431381 C T NOL4 3'UTR 0.63 TCGA-DX-AB2E-01 18 31431942 31431942 G A NOL4 3'UTR 0.56 TCGA-DX-AB2E-01 18 31537439 31537439 C T NOL4 Missense_Mutation p.V427I 0.62 tolerated(0.1) possibly_damaging(0.835) TCGA-DX-AB2E-01 18 43310340 43310340 G A SLC14A1 Missense_Mutation p.E75K 0.61 tolerated(0.3) benign(0.015) TCGA-DX-AB2E-01 18 44549197 44549197 C T TCEB3CL Missense_Mutation p.E368K 0.04 tolerated(0.09) possibly_damaging(0.874) TCGA-DX-AB2E-01 18 51056781 51056781 C T DCC Intron 0.52 TCGA-DX-AB2E-01 18 52586600 52586600 C T CCDC68 Missense_Mutation p.D231N 0.74 tolerated(0.22) benign(0.019) TCGA-DX-AB2E-01 18 55033630 55033630 C T ST8SIA3 3'UTR 0.47 TCGA-DX-AB2E-01 18 56897722 56897722 G A GRP 3'UTR 0.56 TCGA-DX-AB2E-01 18 59973765 59973765 C T KIAA1468 3'UTR 0.50 TCGA-DX-AB2E-01 18 60241711 60241711 C T ZCCHC2 Silent p.F799F 0.55 TCGA-DX-AB2E-01 18 60241712 60241712 C T ZCCHC2 Missense_Mutation p.L800F 0.55 tolerated(0.08) probably_damaging(0.999) TCGA-DX-AB2E-01 18 61171148 61171148 C T SERPINB5 3'UTR 0.57 TCGA-DX-AB2E-01 18 65181527 65181527 G T DSEL Missense_Mutation p.P117T 0.55 deleterious(0) probably_damaging(0.984) TCGA-DX-AB2E-01 18 67231792 67231792 C T DOK6 Missense_Mutation p.P46S 0.42 tolerated(0.55) benign(0.023) TCGA-DX-AB2E-01 18 7042207 7042207 C T LAMA1 Missense_Mutation p.D400N 0.59 tolerated(0.11) possibly_damaging(0.812) TCGA-DX-AB2E-01 18 7231500 7231500 C T LRRC30 Silent p.L122L 0.60 TCGA-DX-AB2E-01 18 73122369 73122369 G A SMIM21 3'UTR 0.53 TCGA-DX-AB2E-01 18 74963119 74963119 C T GALR1 Silent p.F205F 0.56 TCGA-DX-AB2E-01 18 77894164 77894164 C T ADNP2 Missense_Mutation p.P290S 0.61 tolerated(0.26) benign(0.015) TCGA-DX-AB2E-01 18 77896922 77896922 T G ADNP2 3'UTR 0.70 TCGA-DX-AB2E-01 19 10114285 10114285 C T COL5A3 Missense_Mutation p.E269K 0.72 unknown(0) TCGA-DX-AB2E-01 19 10114286 10114286 C T COL5A3 Silent p.K268K 0.73 TCGA-DX-AB2E-01 19 1048895 1048895 C T ABCA7 Silent p.G757G 0.69 TCGA-DX-AB2E-01 19 1220483 1220483 C T STK11 Silent p.I192I 0.79 TCGA-DX-AB2E-01 19 12734576 12734576 T G ZNF791 Silent p.A22A 0.17 TCGA-DX-AB2E-01 19 14593636 14593636 G A GIPC1 Silent p.P51P 0.62 TCGA-DX-AB2E-01 19 15230044 15230044 G A ILVBL Silent p.N328N 0.68 TCGA-DX-AB2E-01 19 15483804 15483804 G A AKAP8 Missense_Mutation p.P240L 0.73 tolerated(0.06) benign(0.046) TCGA-DX-AB2E-01 19 15636237 15636237 C T CYP4F22 Silent p.F30F 0.75 TCGA-DX-AB2E-01 19 19021843 19021843 G A COPE Missense_Mutation p.S76F 0.52 deleterious(0.01) possibly_damaging(0.609) TCGA-DX-AB2E-01 19 19627015 19627015 C T NDUFA13 5'UTR 0.66 TCGA-DX-AB2E-01 19 22362861 22362861 C T ZNF676 Missense_Mutation p.R553K 0.64 tolerated(0.46) benign(0.002) TCGA-DX-AB2E-01 19 23328960 23328960 G A ZNF730 Missense_Mutation p.E372K 0.51 deleterious(0.02) benign(0.046) TCGA-DX-AB2E-01 19 24102982 24102982 G A ZNF726 Intron 0.65 TCGA-DX-AB2E-01 19 33333197 33333197 G A SLC7A9 Silent p.I367I 0.43 TCGA-DX-AB2E-01 19 33608775 33608775 C T GPATCH1 Silent p.S747S 0.43 TCGA-DX-AB2E-01 19 34900200 34900200 C T RP11-618P17.4 Silent p.D186D 0.31 TCGA-DX-AB2E-01 19 35850340 35850340 C T FFAR3 Missense_Mutation p.P183L 0.22 deleterious(0) probably_damaging(0.976) TCGA-DX-AB2E-01 19 3611118 3611118 G A CACTIN 3'UTR 0.78 TCGA-DX-AB2E-01 19 36212555 36212555 T C KMT2B Missense_Mutation p.M769T 0.49 benign(0) TCGA-DX-AB2E-01 19 36214020 36214021 CC A KMT2B Frame_Shift_Del p.P949Hfs*37 0.24 TCGA-DX-AB2E-01 19 36219715 36219715 C T KMT2B Missense_Mutation p.H1538Y 0.39 possibly_damaging(0.775) TCGA-DX-AB2E-01 19 36506365 36506365 T C CLIP3 3'UTR 0.52 TCGA-DX-AB2E-01 19 36641091 36641091 A C CAPNS1 3'UTR 0.52 TCGA-DX-AB2E-01 19 37309433 37309433 C A ZNF790 Missense_Mutation p.A605S 0.15 tolerated(0.26) benign(0.099) TCGA-DX-AB2E-01 19 38327560 38327560 G A AC016582.2 RNA 0.45 TCGA-DX-AB2E-01 19 38377043 38377043 C T WDR87 Missense_Mutation p.G2384E 0.16 unknown(0) TCGA-DX-AB2E-01 19 38378106 38378106 C T WDR87 Missense_Mutation p.E2030K 0.28 benign(0.153) TCGA-DX-AB2E-01 19 39066567 39066567 C T RYR1 Missense_Mutation p.P4713L 0.36 unknown(0) TCGA-DX-AB2E-01 19 39421417 39421417 C T SARS2 5'Flank 0.18 TCGA-DX-AB2E-01 19 39971435 39971435 C T TIMM50 Missense_Mutation p.S84F 0.52 deleterious_low_confidence(0.04) benign(0.011) TCGA-DX-AB2E-01 19 41019298 41019298 G A SPTBN4 Missense_Mutation p.E868K 0.36 deleterious(0.05) probably_damaging(0.949) TCGA-DX-AB2E-01 19 41128389 41128389 C A LTBP4 Missense_Mutation p.P1167T 0.27 tolerated(0.09) probably_damaging(0.988) TCGA-DX-AB2E-01 19 41704520 41704520 G A CYP2S1 Missense_Mutation p.G216E 0.62 deleterious(0.02) possibly_damaging(0.765) TCGA-DX-AB2E-01 19 41704521 41704521 G A CYP2S1 Silent p.G216G 0.62 TCGA-DX-AB2E-01 19 43772263 43772263 C T PSG9 Missense_Mutation p.E35K 0.41 deleterious(0.04) benign(0.013) TCGA-DX-AB2E-01 19 44030332 44030332 G A ETHE1 Intron 0.17 TCGA-DX-AB2E-01 19 44470188 44470188 C T ZNF221 Silent p.S178S 0.49 TCGA-DX-AB2E-01 19 44591126 44591126 C T ZNF284 Missense_Mutation p.R499C 0.51 deleterious(0.05) possibly_damaging(0.878) TCGA-DX-AB2E-01 19 44980972 44980972 G A ZNF180 Missense_Mutation p.P576S 0.51 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 19 45375161 45375161 C T PVRL2 Missense_Mutation p.P177L 0.31 tolerated(0.06) benign(0.112) TCGA-DX-AB2E-01 19 45491343 45491343 C T CLPTM1 Silent p.A348A 0.44 TCGA-DX-AB2E-01 19 46287352 46287352 G A DMWD 3'UTR 0.30 TCGA-DX-AB2E-01 19 4891307 4891307 G A ARRDC5 Silent p.T260T 0.69 TCGA-DX-AB2E-01 19 49129294 49129294 C T SPHK2 Silent p.G62G 0.36 TCGA-DX-AB2E-01 19 49225154 49225154 G A RASIP1 Silent p.A883A 0.33 TCGA-DX-AB2E-01 19 49878104 49878104 C T DKKL1 Missense_Mutation p.A183V 0.42 tolerated_low_confidence(0.51) benign(0.014) TCGA-DX-AB2E-01 19 49990694 49990694 G A RPL13A 5'Flank 0.58 TCGA-DX-AB2E-01 19 49990766 49990766 C T RPL13A 5'Flank 0.29 TCGA-DX-AB2E-01 19 50373120 50373120 G A AKT1S1 3'UTR 0.30 TCGA-DX-AB2E-01 19 50373121 50373121 G A AKT1S1 3'UTR 0.30 TCGA-DX-AB2E-01 19 51391340 51391340 G A KLKP1 RNA 0.50 TCGA-DX-AB2E-01 19 51503485 51503485 C T KLK8 Missense_Mutation p.S132N 0.34 tolerated(0.65) probably_damaging(0.917) TCGA-DX-AB2E-01 19 52034118 52034118 C T SIGLEC6 Missense_Mutation p.G175R 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-DX-AB2E-01 19 53015037 53015037 C T ZNF578 Missense_Mutation p.S468L 0.50 deleterious(0.04) probably_damaging(0.99) TCGA-DX-AB2E-01 19 53208471 53208471 G A ZNF611 Missense_Mutation p.R613C 0.18 deleterious(0.03) probably_damaging(0.97) TCGA-DX-AB2E-01 19 53740127 53740127 G A ZNF677 3'UTR 0.33 TCGA-DX-AB2E-01 19 54201659 54201659 G A MIR523 RNA 0.45 TCGA-DX-AB2E-01 19 54204530 54204530 C T MIR520B RNA 0.50 TCGA-DX-AB2E-01 19 55085911 55085911 C T LILRA2 Missense_Mutation p.R72W 0.54 tolerated(0.07) benign(0.001) TCGA-DX-AB2E-01 19 55098685 55098685 C T LILRA2 Missense_Mutation p.P442S 0.22 tolerated(0.24) benign(0.002) TCGA-DX-AB2E-01 19 55177330 55177330 C T LILRB4 Silent p.L274L 0.26 TCGA-DX-AB2E-01 19 55341613 55341613 C T KIR3DL1 Silent p.F406F 0.42 TCGA-DX-AB2E-01 19 55481476 55481476 G A NLRP2 Silent p.T31T 0.14 TCGA-DX-AB2E-01 19 55481485 55481485 C T NLRP2 Silent p.S34S 0.42 TCGA-DX-AB2E-01 19 55512302 55512302 G A NLRP2 3'UTR 0.53 TCGA-DX-AB2E-01 19 55512364 55512364 G A NLRP2 3'UTR 0.40 TCGA-DX-AB2E-01 19 55568079 55568079 C T RDH13 Silent p.R94R 0.40 TCGA-DX-AB2E-01 19 55870484 55870484 C T FAM71E2 Silent p.G584G 0.20 TCGA-DX-AB2E-01 19 56029824 56029824 C T SSC5D Missense_Mutation p.S1394F 0.31 unknown(0) TCGA-DX-AB2E-01 19 56382299 56382299 G A NLRP4 Missense_Mutation p.D821N 0.21 tolerated(0.08) possibly_damaging(0.576) TCGA-DX-AB2E-01 19 56443701 56443701 C T NLRP13 5'Flank 0.44 TCGA-DX-AB2E-01 19 56600179 56600179 G A ZNF787 Missense_Mutation p.P121L 0.17 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 19 57922526 57922526 C T AC003002.6 Intron 0.45 TCGA-DX-AB2E-01 19 58115665 58115665 G A ZNF530 Silent p.E17E 0.17 TCGA-DX-AB2E-01 19 58549462 58549462 C T ZSCAN1 Silent p.F86F 0.31 TCGA-DX-AB2E-01 19 58927188 58927188 C G ZNF584 Intron 0.44 TCGA-DX-AB2E-01 19 59025634 59025634 A C ZBTB45 Silent p.S441S 0.42 TCGA-DX-AB2E-01 19 7975656 7975656 C T MAP2K7 Missense_Mutation p.P215S 0.85 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 19 7975657 7975657 C T MAP2K7 Missense_Mutation p.P215L 0.87 deleterious(0.02) probably_damaging(0.998) TCGA-DX-AB2E-01 19 8536305 8536305 C T HNRNPM Missense_Mutation p.P331S 0.70 deleterious(0.04) possibly_damaging(0.65) TCGA-DX-AB2E-01 19 9050056 9050056 G A MUC16 Silent p.I10525I 0.75 TCGA-DX-AB2E-01 19 9070805 9070805 C T MUC16 Missense_Mutation p.M5547I 0.70 unknown(0) TCGA-DX-AB2E-01 19 9298706 9298706 C T OR7D2 3'UTR 0.64 TCGA-DX-AB2E-01 19 9325175 9325175 G A OR7D4 Silent p.F113F 0.76 TCGA-DX-AB2E-01 1 10436808 10436808 C T KIF1B 3'UTR 0.26 TCGA-DX-AB2E-01 1 109365795 109365795 C T AKNAD1 Intron 0.12 TCGA-DX-AB2E-01 1 109373193 109373193 C T AKNAD1 Missense_Mutation p.R609K 0.13 tolerated(0.22) benign(0.164) TCGA-DX-AB2E-01 1 109801544 109801544 C T CELSR2 Silent p.H1267H 0.50 TCGA-DX-AB2E-01 1 109801545 109801545 C T CELSR2 Missense_Mutation p.P1268S 0.48 deleterious(0.02) possibly_damaging(0.521) TCGA-DX-AB2E-01 1 109812124 109812124 C T CELSR2 Silent p.A2297A 0.26 TCGA-DX-AB2E-01 1 110203976 110203976 C T GSTM4 3'UTR 0.22 TCGA-DX-AB2E-01 1 111215637 111215637 G A KCNA3 3'UTR 0.27 TCGA-DX-AB2E-01 1 112020834 112020834 C T C1orf162 3'UTR 0.32 TCGA-DX-AB2E-01 1 113238120 113238120 G A MOV10 Missense_Mutation p.R568Q 0.22 tolerated(0.42) benign(0.018) TCGA-DX-AB2E-01 1 11346011 11346011 C T UBIAD1 Silent p.T280T 0.24 TCGA-DX-AB2E-01 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.48 deleterious(0) benign(0.109) TCGA-DX-AB2E-01 1 118169029 118169029 C T FAM46C 3'UTR 0.42 TCGA-DX-AB2E-01 1 12439591 12439591 C G VPS13D Missense_Mutation p.Q3711E 0.24 possibly_damaging(0.451) TCGA-DX-AB2E-01 1 1266876 1266876 C T TAS1R3 Missense_Mutation p.L51F 0.55 tolerated(0.07) benign(0.02) TCGA-DX-AB2E-01 1 12887197 12887197 G A PRAMEF11 Silent p.F220F 0.13 TCGA-DX-AB2E-01 1 12979742 12979742 C T PRAMEF7 Missense_Mutation p.L312F 0.27 probably_damaging(0.999) TCGA-DX-AB2E-01 1 1425758 1425758 C T ATAD3B Silent p.L487L 0.50 TCGA-DX-AB2E-01 1 142803613 142803613 G A RP11-423O2.5 RNA 0.06 TCGA-DX-AB2E-01 1 145542306 145542306 C T ITGA10 3'UTR 0.48 TCGA-DX-AB2E-01 1 145542307 145542307 C T ITGA10 3'UTR 0.47 TCGA-DX-AB2E-01 1 150463910 150463910 T A TARS2 Missense_Mutation p.C185S 0.63 tolerated(0.11) benign(0.035) TCGA-DX-AB2E-01 1 152324936 152324936 C T FLG2 Missense_Mutation p.D1776N 0.34 probably_damaging(0.999) TCGA-DX-AB2E-01 1 152733505 152733505 C T KPRP Silent p.L481L 0.28 TCGA-DX-AB2E-01 1 152883368 152883368 C T IVL Silent p.L365L 0.21 TCGA-DX-AB2E-01 1 153391927 153391927 C T S100A7A 3'UTR 0.50 TCGA-DX-AB2E-01 1 153915583 153915583 C T DENND4B Missense_Mutation p.R114H 0.06 deleterious(0.04) benign(0.001) TCGA-DX-AB2E-01 1 154562360 154562360 C T ADAR Silent p.L847L 0.24 TCGA-DX-AB2E-01 1 156436544 156436544 G A MEF2D 3'UTR 0.17 TCGA-DX-AB2E-01 1 156623143 156623143 G A BCAN Intron 0.39 TCGA-DX-AB2E-01 1 156669646 156669646 G A CRABP2 3'UTR 0.56 TCGA-DX-AB2E-01 1 156846306 156846306 C T NTRK1 Missense_Mutation p.R583C 0.41 deleterious(0) probably_damaging(0.961) TCGA-DX-AB2E-01 1 156849010 156849010 C T NTRK1 Silent p.V634V 0.21 TCGA-DX-AB2E-01 1 157514756 157514756 G A FCRL5 Silent p.L142L 0.34 TCGA-DX-AB2E-01 1 157667157 157667157 G A FCRL3 Missense_Mutation p.P206L 0.17 tolerated(0.05) benign(0.424) TCGA-DX-AB2E-01 1 15788055 15788055 G A CELA2A Splice_Site p.X44_splice 0.15 TCGA-DX-AB2E-01 1 15788056 15788056 G A CELA2A Missense_Mutation p.V44I 0.16 tolerated(0.99) benign(0.17) TCGA-DX-AB2E-01 1 158326025 158326025 G A CD1E Intron 0.62 TCGA-DX-AB2E-01 1 158369023 158369023 G A OR10T2 Silent p.I78I 0.23 TCGA-DX-AB2E-01 1 158548922 158548922 G A OR10X1 Silent p.T256T 0.38 TCGA-DX-AB2E-01 1 159558493 159558493 G T APCS Missense_Mutation p.V223F 0.18 deleterious(0.04) benign(0.042) TCGA-DX-AB2E-01 1 159558495 159558495 C T APCS Silent p.V223V 0.17 TCGA-DX-AB2E-01 1 159558607 159558607 C T APCS 3'UTR 0.35 TCGA-DX-AB2E-01 1 160098533 160098533 C T ATP1A2 Missense_Mutation p.T370I 0.41 tolerated(0.2) possibly_damaging(0.512) TCGA-DX-AB2E-01 1 160396964 160396964 C T VANGL2 3'UTR 0.40 TCGA-DX-AB2E-01 1 160970569 160970569 T A F11R Splice_Site p.X81_splice 0.33 TCGA-DX-AB2E-01 1 161141446 161141446 C T B4GALT3 3'UTR 0.18 TCGA-DX-AB2E-01 1 161141447 161141447 C T B4GALT3 3'UTR 0.18 TCGA-DX-AB2E-01 1 161518431 161518431 T G FCGR3A Missense_Mutation p.Q69H 0.15 deleterious(0) possibly_damaging(0.754) TCGA-DX-AB2E-01 1 16260477 16260477 C T SPEN Missense_Mutation p.P2581L 0.22 benign(0.005) TCGA-DX-AB2E-01 1 16344400 16344400 G A HSPB7 Missense_Mutation p.S20F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-DX-AB2E-01 1 16376405 16376405 C T CLCNKB Missense_Mutation p.A321V 0.18 tolerated(0.13) possibly_damaging(0.689) TCGA-DX-AB2E-01 1 16460971 16460971 G A EPHA2 Silent p.I558I 0.14 TCGA-DX-AB2E-01 1 167806500 167806500 G A ADCY10 Missense_Mutation p.P1022S 0.31 tolerated(0.38) benign(0.009) TCGA-DX-AB2E-01 1 167817705 167817705 C T ADCY10 Silent p.E777E 0.26 TCGA-DX-AB2E-01 1 169272385 169272385 G A NME7 Silent p.F146F 0.17 TCGA-DX-AB2E-01 1 169493088 169493088 C T F5 Nonsense_Mutation p.W1948* 0.27 TCGA-DX-AB2E-01 1 171116864 171116864 C T FMO6P Missense_Mutation p.S195L 0.44 deleterious(0) possibly_damaging(0.458) TCGA-DX-AB2E-01 1 171673155 171673155 G A VAMP4 3'UTR 0.19 TCGA-DX-AB2E-01 1 173490500 173490500 G A SLC9C2 Silent p.T893T 0.26 TCGA-DX-AB2E-01 1 173596261 173596261 G A ANKRD45 Silent p.V178V 0.37 TCGA-DX-AB2E-01 1 173616058 173616058 G A ANKRD45 Silent p.F141F 0.25 TCGA-DX-AB2E-01 1 175331865 175331865 C T TNR Missense_Mutation p.E930K 0.29 tolerated(0.12) benign(0.376) TCGA-DX-AB2E-01 1 175362936 175362936 C T TNR Missense_Mutation p.E446K 0.18 deleterious(0.03) probably_damaging(0.999) TCGA-DX-AB2E-01 1 175365934 175365934 G A TNR Missense_Mutation p.P329L 0.37 deleterious(0) probably_damaging(0.909) TCGA-DX-AB2E-01 1 17593270 17593270 C T PADI3 Silent p.D155D 0.49 TCGA-DX-AB2E-01 1 176668379 176668379 G A PAPPA2 Missense_Mutation p.D964N 0.40 deleterious(0.05) probably_damaging(0.923) TCGA-DX-AB2E-01 1 179354442 179354442 C T AXDND1 Nonsense_Mutation p.R271* 0.29 TCGA-DX-AB2E-01 1 181549753 181549753 C T CACNA1E Silent p.P264P 0.25 TCGA-DX-AB2E-01 1 183217613 183217613 G A NMNAT2 3'UTR 0.40 TCGA-DX-AB2E-01 1 186280283 186280283 G A PRG4 Missense_Mutation p.G1206E 0.38 unknown(0) TCGA-DX-AB2E-01 1 19166408 19166408 G A TAS1R2 Silent p.D735D 0.29 TCGA-DX-AB2E-01 1 19166798 19166798 G A TAS1R2 Silent p.F605F 0.26 TCGA-DX-AB2E-01 1 19401406 19401406 G A UBR4 Intron 0.41 TCGA-DX-AB2E-01 1 19439401 19439401 A - UBR4 Intron 0.34 TCGA-DX-AB2E-01 1 196300353 196300353 C T KCNT2 Missense_Mutation p.G679E 0.39 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 1 196300354 196300354 C T KCNT2 Missense_Mutation p.G679R 0.38 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 1 196879469 196879469 G A CFHR4 Silent p.T285T 0.36 TCGA-DX-AB2E-01 1 198687384 198687384 G A PTPRC Missense_Mutation p.D538N 0.38 tolerated(0.42) benign(0.009) TCGA-DX-AB2E-01 1 201012494 201012494 G A CACNA1S Missense_Mutation p.P1655S 0.20 tolerated_low_confidence(0.21) benign(0.004) TCGA-DX-AB2E-01 1 201169436 201169436 A T IGFN1 Missense_Mutation p.K177M 0.12 possibly_damaging(0.895) TCGA-DX-AB2E-01 1 201328204 201328204 G A TNNT2 3'UTR 0.44 TCGA-DX-AB2E-01 1 201434824 201434824 G A PHLDA3 3'UTR 0.30 TCGA-DX-AB2E-01 1 201777651 201777651 G A NAV1 Silent p.K1317K 0.24 TCGA-DX-AB2E-01 1 202462333 202462333 C T PPP1R12B Missense_Mutation p.P678L 0.49 tolerated(0.25) benign(0.001) TCGA-DX-AB2E-01 1 202544234 202544234 C T PPP1R12B Intron 0.46 TCGA-DX-AB2E-01 1 202912941 202912941 G A ADIPOR1 Silent p.I250I 0.38 TCGA-DX-AB2E-01 1 203144911 203144911 G A MYBPH 5'UTR 0.32 TCGA-DX-AB2E-01 1 203677214 203677214 T C ATP2B4 Silent p.A513A 0.47 TCGA-DX-AB2E-01 1 204587480 204587480 G A LRRN2 Silent p.T547T 0.27 TCGA-DX-AB2E-01 1 205211030 205211030 C T TMCC2 Missense_Mutation p.P202L 0.40 deleterious(0.03) benign(0.015) TCGA-DX-AB2E-01 1 208215704 208215704 C T PLXNA2 Missense_Mutation p.G1342E 0.41 tolerated(0.07) probably_damaging(0.999) TCGA-DX-AB2E-01 1 215259781 215259781 G A KCNK2 Silent p.T39T 0.32 TCGA-DX-AB2E-01 1 215914811 215914811 G A USH2A Missense_Mutation p.P3873S 0.24 probably_damaging(0.999) TCGA-DX-AB2E-01 1 216061968 216061968 G C USH2A Missense_Mutation p.L2675V 0.23 possibly_damaging(0.641) TCGA-DX-AB2E-01 1 216679137 216679137 C T ESRRG 3'UTR 0.09 TCGA-DX-AB2E-01 1 218475648 218475648 C T RRP15 Missense_Mutation p.S51L 0.14 tolerated(0.77) benign(0) TCGA-DX-AB2E-01 1 21938038 21938038 C T RAP1GAP Silent p.T314T 0.47 TCGA-DX-AB2E-01 1 223813569 223813569 C T CAPN8 Missense_Mutation p.E251K 0.23 benign(0.285) TCGA-DX-AB2E-01 1 223994597 223994597 G A TP53BP2 Missense_Mutation p.S142F 0.30 tolerated(0.07) possibly_damaging(0.794) TCGA-DX-AB2E-01 1 225492739 225492739 G A DNAH14 Missense_Mutation p.E2239K 0.21 tolerated(0.31) possibly_damaging(0.568) TCGA-DX-AB2E-01 1 225555685 225555685 G A DNAH14 Missense_Mutation p.G3997E 0.48 possibly_damaging(0.736) TCGA-DX-AB2E-01 1 225702465 225702465 G A ENAH Missense_Mutation p.P351S 0.56 tolerated_low_confidence(0.23) probably_damaging(0.993) TCGA-DX-AB2E-01 1 2267971 2267971 G A MORN1 Missense_Mutation p.S396F 0.53 deleterious(0.01) possibly_damaging(0.466) TCGA-DX-AB2E-01 1 228210563 228210563 C T WNT3A Silent p.T89T 0.32 TCGA-DX-AB2E-01 1 228476585 228476585 G A OBSCN Silent p.V3874V 0.21 TCGA-DX-AB2E-01 1 228521410 228521410 C T OBSCN Missense_Mutation p.S6285F 0.35 possibly_damaging(0.637) TCGA-DX-AB2E-01 1 229771837 229771837 G A URB2 Missense_Mutation p.G493S 0.24 tolerated(0.12) possibly_damaging(0.647) TCGA-DX-AB2E-01 1 22987377 22987377 G A C1QB Missense_Mutation p.G87E 0.64 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 1 23241307 23241307 G T EPHB2 3'Flank 0.39 TCGA-DX-AB2E-01 1 232568109 232568109 G A SIPA1L2 Silent p.P1380P 0.30 TCGA-DX-AB2E-01 1 233134090 233134090 G A PCNXL2 Missense_Mutation p.P1900S 0.30 tolerated(0.2) benign(0.001) TCGA-DX-AB2E-01 1 233335983 233335983 G A PCNXL2 Missense_Mutation p.S964F 0.38 tolerated(1) benign(0.001) TCGA-DX-AB2E-01 1 238050814 238050814 G A ZP4 Missense_Mutation p.R201W 0.27 deleterious(0.04) probably_damaging(0.993) TCGA-DX-AB2E-01 1 240371408 240371408 C T FMN2 Missense_Mutation p.P1099L 0.33 unknown(0) TCGA-DX-AB2E-01 1 240371671 240371671 C A FMN2 Missense_Mutation p.P1187T 0.18 unknown(0) TCGA-DX-AB2E-01 1 240371672 240371672 C T FMN2 Missense_Mutation p.P1187L 0.18 unknown(0) TCGA-DX-AB2E-01 1 24406619 24406619 G A MYOM3 Missense_Mutation p.P825S 0.14 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 1 24409022 24409022 G A MYOM3 Intron 0.18 TCGA-DX-AB2E-01 1 24447539 24447539 C T IL22RA1 Missense_Mutation p.G494D 0.15 tolerated(0.09) benign(0.022) TCGA-DX-AB2E-01 1 24447540 24447540 C T IL22RA1 Missense_Mutation p.G494S 0.16 tolerated(0.09) benign(0.022) TCGA-DX-AB2E-01 1 247587615 247587615 C T NLRP3 Silent p.I290I 0.19 TCGA-DX-AB2E-01 1 247902365 247902365 G A OR14K1 Missense_Mutation p.R150K 0.47 deleterious(0) benign(0.002) TCGA-DX-AB2E-01 1 248023942 248023942 A G TRIM58 Silent p.E148E 0.22 TCGA-DX-AB2E-01 1 248084342 248084342 C T OR2T8 Missense_Mutation p.S8F 0.38 tolerated(0.07) benign(0.181) TCGA-DX-AB2E-01 1 248201652 248201652 C T OR2L2 Missense_Mutation p.T28I 0.23 tolerated(1) benign(0.001) TCGA-DX-AB2E-01 1 248487739 248487739 G A OR2M7 Silent p.I44I 0.36 TCGA-DX-AB2E-01 1 248569723 248569723 C T OR2T1 Missense_Mutation p.S143F 0.18 deleterious(0) probably_damaging(0.95) TCGA-DX-AB2E-01 1 248616987 248616987 G A OR2T2 Missense_Mutation p.D297N 0.10 deleterious(0.04) benign(0.221) TCGA-DX-AB2E-01 1 26900607 26900607 C T RPS6KA1 Missense_Mutation p.S717F 0.44 tolerated(0.07) possibly_damaging(0.565) TCGA-DX-AB2E-01 1 27272685 27272685 C T NUDC 3'UTR 0.60 TCGA-DX-AB2E-01 1 27632867 27632867 C T WDTC1 Missense_Mutation p.P675L 0.20 deleterious(0) possibly_damaging(0.559) TCGA-DX-AB2E-01 1 31447610 31447610 G A PUM1 Missense_Mutation p.P465L 0.54 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 1 31447612 31447612 A T PUM1 Silent p.T464T 0.50 TCGA-DX-AB2E-01 1 32196593 32196593 G A BAI2 Silent p.P1396P 0.60 TCGA-DX-AB2E-01 1 33146654 33146654 A G SYNC 3'UTR 0.14 TCGA-DX-AB2E-01 1 33956656 33956656 C T ZSCAN20 Silent p.S266S 0.21 TCGA-DX-AB2E-01 1 34102131 34102131 C T CSMD2 Missense_Mutation p.D1560N 0.51 deleterious(0.02) probably_damaging(0.976) TCGA-DX-AB2E-01 1 34166166 34166166 G A CSMD2 Silent p.F1188F 0.24 TCGA-DX-AB2E-01 1 34276407 34276407 G A CSMD2 Silent p.F421F 0.23 TCGA-DX-AB2E-01 1 34684344 34684344 G A C1orf94 Silent p.G593G 0.11 TCGA-DX-AB2E-01 1 35449537 35449537 G A ZMYM6 3'Flank 0.24 TCGA-DX-AB2E-01 1 3669289 3669289 G A CCDC27 Missense_Mutation p.E82K 0.45 tolerated(0.08) possibly_damaging(0.801) TCGA-DX-AB2E-01 1 40537980 40537982 CTT - CAP1 3'UTR 0.47 TCGA-DX-AB2E-01 1 42628634 42628634 G A GUCA2A Silent p.I97I 0.13 TCGA-DX-AB2E-01 1 43652450 43652450 C T WDR65 Missense_Mutation p.P348S 0.51 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 1 43785016 43785016 G A TIE1 Silent p.T1011T 0.47 TCGA-DX-AB2E-01 1 44057050 44057050 C T PTPRF Missense_Mutation p.P453S 0.56 tolerated(0.82) benign(0.006) TCGA-DX-AB2E-01 1 45960756 45960756 G A CCDC163P 3'Flank 0.51 TCGA-DX-AB2E-01 1 46094016 46094016 G A GPBP1L1 Missense_Mutation p.P446L 0.37 deleterious(0) benign(0.279) TCGA-DX-AB2E-01 1 50941264 50941264 G A FAF1 Missense_Mutation p.P581S 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB2E-01 1 55251195 55251195 C T TTC22 Intron 0.39 TCGA-DX-AB2E-01 1 56197358 56197358 G A RP11-466L17.1 RNA 0.17 TCGA-DX-AB2E-01 1 57169696 57169696 C T PRKAA2 Missense_Mutation p.P281S 0.46 tolerated(0.68) benign(0.035) TCGA-DX-AB2E-01 1 57169747 57169747 G A PRKAA2 Missense_Mutation p.E298K 0.25 tolerated(0.18) benign(0.059) TCGA-DX-AB2E-01 1 57170103 57170103 G A PRKAA2 Missense_Mutation p.M416I 0.44 deleterious(0.03) possibly_damaging(0.837) TCGA-DX-AB2E-01 1 57184730 57184730 G A C1orf168 3'UTR 0.52 TCGA-DX-AB2E-01 1 57320538 57320538 C T C8A 5'UTR 0.17 TCGA-DX-AB2E-01 1 57480902 57480902 G A DAB1 Silent p.F366F 0.26 TCGA-DX-AB2E-01 1 60505853 60505853 C T C1orf87 Splice_Site p.X162_splice 0.25 TCGA-DX-AB2E-01 1 61921790 61921790 C T NFIA 3'Flank 0.21 TCGA-DX-AB2E-01 1 70486803 70486803 G A LRRC7 Silent p.G474G 0.46 TCGA-DX-AB2E-01 1 70488809 70488809 G A LRRC7 Missense_Mutation p.D478N 0.47 tolerated(0.49) benign(0.015) TCGA-DX-AB2E-01 1 70705161 70705161 C T SRSF11 Missense_Mutation p.S253L 0.55 tolerated(0.05) unknown(0) TCGA-DX-AB2E-01 1 71872364 71872364 G A NEGR1 3'UTR 0.53 TCGA-DX-AB2E-01 1 74507223 74507223 T A LRRIQ3 Missense_Mutation p.K464N 0.17 deleterious(0.02) probably_damaging(0.972) TCGA-DX-AB2E-01 1 76378665 76378665 C T MSH4 3'UTR 0.55 TCGA-DX-AB2E-01 1 900675 900675 C T KLHL17 3'UTR 0.12 TCGA-DX-AB2E-01 1 9324307 9324307 C T H6PD Silent p.F585F 0.16 TCGA-DX-AB2E-01 1 94643582 94643582 C T ARHGAP29 Silent p.L874L 0.43 TCGA-DX-AB2E-01 1 97548028 97548028 T A DPYD Splice_Site p.X923_splice 0.17 TCGA-DX-AB2E-01 1 99157133 99157133 T C SNX7 Missense_Mutation p.F173L 0.51 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 20 10280021 10280021 C T SNAP25 Silent p.I171I 0.36 TCGA-DX-AB2E-01 20 13251361 13251361 G A ISM1 Missense_Mutation p.D117N 0.39 deleterious(0.01) probably_damaging(0.914) TCGA-DX-AB2E-01 20 18794981 18794981 G A SCP2D1 3'UTR 0.32 TCGA-DX-AB2E-01 20 20322481 20322481 C T C20orf26 Silent p.F1143F 0.47 TCGA-DX-AB2E-01 20 20596831 20596831 A G RALGAPA2 Missense_Mutation p.F515S 0.34 deleterious(0.01) possibly_damaging(0.855) TCGA-DX-AB2E-01 20 24565519 24565519 G C SYNDIG1 Missense_Mutation p.E170Q 0.46 deleterious(0) probably_damaging(0.995) TCGA-DX-AB2E-01 20 24929943 24929943 A T CST7 5'UTR 0.41 TCGA-DX-AB2E-01 20 2639478 2639478 C T IDH3B Silent p.R359R 0.41 TCGA-DX-AB2E-01 20 2639479 2639479 C T IDH3B Missense_Mutation p.R359Q 0.44 deleterious(0.02) probably_damaging(0.968) TCGA-DX-AB2E-01 20 29623168 29623168 G A FRG1B 5'UTR 0.03 TCGA-DX-AB2E-01 20 3016353 3016353 C T PTPRA Silent p.T681T 0.39 TCGA-DX-AB2E-01 20 30408108 30408108 G A MYLK2 Missense_Mutation p.G78R 0.43 deleterious_low_confidence(0.04) benign(0.037) TCGA-DX-AB2E-01 20 31672720 31672720 C T BPIFB4 Missense_Mutation p.L234F 0.36 tolerated(0.06) possibly_damaging(0.836) TCGA-DX-AB2E-01 20 33570357 33570357 C T MYH7B Missense_Mutation p.A250V 0.38 benign(0) TCGA-DX-AB2E-01 20 34092368 34092368 G A CEP250 Silent p.R2057R 0.11 TCGA-DX-AB2E-01 20 36031953 36031953 G A SRC 3'UTR 0.26 TCGA-DX-AB2E-01 20 36031954 36031954 G A SRC 3'UTR 0.29 TCGA-DX-AB2E-01 20 37150191 37150191 C T RALGAPB Missense_Mutation p.S490F 0.30 tolerated(0.57) benign(0.391) TCGA-DX-AB2E-01 20 37650563 37650563 C T DHX35 Silent p.N526N 0.43 TCGA-DX-AB2E-01 20 40033678 40033678 G A CHD6 Missense_Mutation p.T2568I 0.33 deleterious(0.05) benign(0.342) TCGA-DX-AB2E-01 20 40162001 40162001 C T CHD6 Missense_Mutation p.G81E 0.41 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-DX-AB2E-01 20 42935415 42935415 G A FITM2 Silent p.F213F 0.46 TCGA-DX-AB2E-01 20 44045318 44045318 C T PIGT Nonsense_Mutation p.Q117* 0.35 TCGA-DX-AB2E-01 20 44054503 44054503 C T PIGT 3'UTR 0.37 TCGA-DX-AB2E-01 20 44439823 44439823 C T DNTTIP1 Missense_Mutation p.P327S 0.30 tolerated_low_confidence(0.27) benign(0.015) TCGA-DX-AB2E-01 20 44486024 44486024 C T ACOT8 5'UTR 0.52 TCGA-DX-AB2E-01 20 44506223 44506223 T C ZSWIM3 Silent p.T342T 0.32 TCGA-DX-AB2E-01 20 44664103 44664103 A T SLC12A5 Missense_Mutation p.N93Y 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-DX-AB2E-01 20 44664104 44664104 A C SLC12A5 Missense_Mutation p.N93T 0.30 tolerated(0.06) probably_damaging(0.987) TCGA-DX-AB2E-01 20 44686568 44686568 G A SLC12A5 3'Flank 0.34 TCGA-DX-AB2E-01 20 46300964 46300964 G A SULF2 Silent p.R518R 0.44 TCGA-DX-AB2E-01 20 49620663 49620663 G T KCNG1 Silent p.L485L 0.29 TCGA-DX-AB2E-01 20 5093715 5093715 G A TMEM230 5'UTR 0.36 TCGA-DX-AB2E-01 20 51870918 51870918 G A TSHZ2 Silent p.E307E 0.31 TCGA-DX-AB2E-01 20 51872433 51872433 C T TSHZ2 Silent p.S812S 0.23 TCGA-DX-AB2E-01 20 54573791 54573791 C T CBLN4 Missense_Mutation p.G143E 0.27 tolerated(0.27) benign(0.119) TCGA-DX-AB2E-01 20 56138081 56138081 C T PCK1 Intron 0.42 TCGA-DX-AB2E-01 20 57769470 57769470 C T ZNF831 Silent p.S1132S 0.52 TCGA-DX-AB2E-01 20 57770975 57770975 C T ZNF831 Missense_Mutation p.P1264S 0.46 deleterious(0.01) possibly_damaging(0.638) TCGA-DX-AB2E-01 20 61598170 61598170 C T SLC17A9 Intron 0.29 TCGA-DX-AB2E-01 20 62195066 62195066 G A HELZ2 Silent p.I1703I 0.26 TCGA-DX-AB2E-01 20 8637849 8637849 G A PLCB1 Missense_Mutation p.E205K 0.29 deleterious(0.04) benign(0.017) TCGA-DX-AB2E-01 20 8689384 8689384 A C PLCB1 Missense_Mutation p.E412A 0.39 deleterious(0.02) possibly_damaging(0.658) TCGA-DX-AB2E-01 20 8722148 8722148 G A PLCB1 Silent p.V817V 0.26 TCGA-DX-AB2E-01 20 9417703 9417703 G A PLCB4 Missense_Mutation p.A878T 0.34 tolerated(0.65) benign(0.006) TCGA-DX-AB2E-01 20 9461063 9461063 G A PLCB4 3'UTR 0.36 TCGA-DX-AB2E-01 20 9546748 9546748 G A PAK7 Missense_Mutation p.S425F 0.45 deleterious(0.03) probably_damaging(0.974) TCGA-DX-AB2E-01 21 10862806 10862806 G A IGHV1OR21-1 Silent p.G34G 0.20 TCGA-DX-AB2E-01 21 10906904 10906904 C T TPTE 3'UTR 0.14 TCGA-DX-AB2E-01 21 10916378 10916378 G A TPTE Missense_Mutation p.S423L 0.12 deleterious(0.03) possibly_damaging(0.883) TCGA-DX-AB2E-01 21 11029674 11029674 G A BAGE2 RNA 0.24 TCGA-DX-AB2E-01 21 14983026 14983026 C T POTED Silent p.V159V 0.70 TCGA-DX-AB2E-01 21 15599387 15599387 C T RBM11 Missense_Mutation p.P207S 0.40 tolerated_low_confidence(0.41) benign(0.042) TCGA-DX-AB2E-01 21 30300769 30300769 G A LTN1 3'UTR 0.44 TCGA-DX-AB2E-01 21 30303544 30303544 C T LTN1 Missense_Mutation p.G1770D 0.20 deleterious(0) probably_damaging(0.938) TCGA-DX-AB2E-01 21 30358501 30358501 C A LTN1 Missense_Mutation p.V148F 0.39 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 21 31045377 31045377 C T GRIK1 Missense_Mutation p.E218K 0.36 deleterious(0) possibly_damaging(0.57) TCGA-DX-AB2E-01 21 31802671 31802671 C T KRTAP13-4 Silent p.P26P 0.27 TCGA-DX-AB2E-01 21 34011355 34011355 A G SYNJ1 Silent p.L1299L 0.25 TCGA-DX-AB2E-01 21 39086812 39086812 C T KCNJ6 Silent p.G216G 0.19 TCGA-DX-AB2E-01 21 41416186 41416186 C T DSCAM Silent p.R1734R 0.31 TCGA-DX-AB2E-01 21 41450707 41450707 C T DSCAM Missense_Mutation p.E1540K 0.42 deleterious(0.04) probably_damaging(0.936) TCGA-DX-AB2E-01 21 43221686 43221686 G A PRDM15 Missense_Mutation p.T1413I 0.33 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-DX-AB2E-01 21 43329576 43329576 G A C2CD2 Missense_Mutation p.S337F 0.21 tolerated(0.05) possibly_damaging(0.659) TCGA-DX-AB2E-01 21 43413656 43413656 C A ZBTB21 Missense_Mutation p.K183N 0.12 tolerated(0.05) benign(0.309) TCGA-DX-AB2E-01 21 43557616 43557616 C T UMODL1 Silent p.F1409F 0.46 TCGA-DX-AB2E-01 21 43716300 43716300 C T ABCG1 Missense_Mutation p.S612F 0.31 deleterious(0) possibly_damaging(0.824) TCGA-DX-AB2E-01 21 44839073 44839073 C T SIK1 Silent p.R430R 0.24 TCGA-DX-AB2E-01 21 44839074 44839074 C T SIK1 Missense_Mutation p.R430Q 0.24 tolerated(0.29) benign(0.007) TCGA-DX-AB2E-01 21 45157207 45157207 C T PDXK Intron 0.22 TCGA-DX-AB2E-01 21 45374771 45374771 C G AGPAT3 Intron 0.29 TCGA-DX-AB2E-01 21 45401061 45401061 G A AGPAT3 Silent p.V345V 0.30 TCGA-DX-AB2E-01 21 45977988 45977988 G A KRTAP10-3 Missense_Mutation p.S204F 0.33 deleterious(0.02) probably_damaging(0.993) TCGA-DX-AB2E-01 21 46876414 46876414 G A COL18A1 Intron 0.24 TCGA-DX-AB2E-01 21 46876415 46876415 G A COL18A1 Intron 0.26 TCGA-DX-AB2E-01 21 47588471 47588471 C T SPATC1L Missense_Mutation p.E99K 0.23 deleterious(0.04) benign(0.223) TCGA-DX-AB2E-01 21 47738140 47738140 G A C21orf58 Intron 0.33 TCGA-DX-AB2E-01 21 47836528 47836528 G A PCNT Silent p.K2232K 0.41 TCGA-DX-AB2E-01 21 47836529 47836529 G A PCNT Missense_Mutation p.D2233N 0.43 possibly_damaging(0.811) TCGA-DX-AB2E-01 22 18016892 18016892 C T CECR2 Silent p.P382P 0.24 TCGA-DX-AB2E-01 22 18028909 18028909 C T CECR2 Missense_Mutation p.S1290L 0.42 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-DX-AB2E-01 22 18029072 18029072 C T CECR2 Silent p.S1344S 0.20 TCGA-DX-AB2E-01 22 19512708 19512708 C T CLDN5 Intron 0.32 TCGA-DX-AB2E-01 22 24034331 24034331 G A RGL4 Silent p.T38T 0.26 TCGA-DX-AB2E-01 22 24483564 24483564 C T CABIN1 Silent p.S1141S 0.33 TCGA-DX-AB2E-01 22 25255731 25255731 G A SGSM1 Missense_Mutation p.A284T 0.30 deleterious(0) probably_damaging(0.954) TCGA-DX-AB2E-01 22 26164851 26164851 G A MYO18B Missense_Mutation p.G323E 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.736) TCGA-DX-AB2E-01 22 26709777 26709777 C T SEZ6L Missense_Mutation p.P642S 0.26 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 22 26743809 26743809 C T SEZ6L Silent p.I779I 0.35 TCGA-DX-AB2E-01 22 27068673 27068673 G A MIAT RNA 0.50 TCGA-DX-AB2E-01 22 29724159 29724159 G A AP1B1 3'UTR 0.48 TCGA-DX-AB2E-01 22 30951978 30951978 G A GAL3ST1 Silent p.I78I 0.30 TCGA-DX-AB2E-01 22 31493284 31493284 A T SMTN Nonsense_Mutation p.K707* 0.44 TCGA-DX-AB2E-01 22 31523797 31523797 G T INPP5J Intron 0.40 TCGA-DX-AB2E-01 22 31722543 31722543 G A PATZ1 3'UTR 0.22 TCGA-DX-AB2E-01 22 32445989 32445989 G A SLC5A1 Missense_Mutation p.M65I 0.27 tolerated(0.05) benign(0.025) TCGA-DX-AB2E-01 22 37891942 37891942 G A CARD10 Missense_Mutation p.R710C 0.41 deleterious(0) probably_damaging(0.912) TCGA-DX-AB2E-01 22 38481696 38481696 G A BAIAP2L2 Missense_Mutation p.P504L 0.31 tolerated(0.08) possibly_damaging(0.603) TCGA-DX-AB2E-01 22 38481697 38481697 G A BAIAP2L2 Missense_Mutation p.P504S 0.32 tolerated(0.09) benign(0.303) TCGA-DX-AB2E-01 22 38620870 38620870 C T TMEM184B Missense_Mutation p.E302K 0.37 deleterious(0) possibly_damaging(0.866) TCGA-DX-AB2E-01 22 38620871 38620871 C T TMEM184B Silent p.V301V 0.38 TCGA-DX-AB2E-01 22 38687143 38687143 G A CSNK1E 3'UTR 0.62 TCGA-DX-AB2E-01 22 39380212 39380212 G A APOBEC3B Nonsense_Mutation p.W50* 0.22 TCGA-DX-AB2E-01 22 39380213 39380213 G A APOBEC3B Missense_Mutation p.D51N 0.23 tolerated(0.2) benign(0.003) TCGA-DX-AB2E-01 22 39479792 39479792 G T APOBEC3G Missense_Mutation p.R213I 0.37 tolerated(0.38) benign(0.056) TCGA-DX-AB2E-01 22 40139967 40139967 C T ENTHD1 Missense_Mutation p.G514E 0.45 tolerated(0.06) benign(0.006) TCGA-DX-AB2E-01 22 40417804 40417804 G A FAM83F Silent p.G430G 0.50 TCGA-DX-AB2E-01 22 42474870 42474870 C T FAM109B 3'UTR 0.29 TCGA-DX-AB2E-01 22 42474871 42474871 C T FAM109B 3'UTR 0.29 TCGA-DX-AB2E-01 22 43715970 43715970 G A SCUBE1 Silent p.L108L 0.32 TCGA-DX-AB2E-01 22 44221920 44221920 C T SULT4A1 Silent p.K272K 0.35 TCGA-DX-AB2E-01 22 44276668 44276668 G A PNPLA5 3'UTR 0.38 TCGA-DX-AB2E-01 22 44602419 44602419 C T PARVG 3'UTR 0.35 TCGA-DX-AB2E-01 22 44696805 44696805 C T KIAA1644 Silent p.Q7Q 0.33 TCGA-DX-AB2E-01 22 45929004 45929004 C T FBLN1 Silent p.F202F 0.14 TCGA-DX-AB2E-01 22 50013975 50013975 C T C22orf34 3'UTR 0.27 TCGA-DX-AB2E-01 22 50654205 50654205 C T SELO Missense_Mutation p.P471S 0.52 tolerated(0.46) benign(0.006) TCGA-DX-AB2E-01 2 102805732 102805732 G A IL1RL2 Missense_Mutation p.M85I 0.40 tolerated(0.46) benign(0.002) TCGA-DX-AB2E-01 2 107041069 107041069 C T RGPD3 Missense_Mutation p.M1118I 0.44 deleterious(0.03) benign(0.339) TCGA-DX-AB2E-01 2 108499159 108499159 G A RGPD4 Missense_Mutation p.R1699K 0.18 deleterious_low_confidence(0) benign(0.067) TCGA-DX-AB2E-01 2 108628373 108628373 G A SLC5A7 3'UTR 0.18 TCGA-DX-AB2E-01 2 108881355 108881355 C T SULT1C3 Silent p.I232I 0.19 TCGA-DX-AB2E-01 2 109383182 109383182 C T RANBP2 Missense_Mutation p.L2063F 0.39 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 2 109384259 109384259 C T RANBP2 Missense_Mutation p.R2422C 0.11 deleterious(0.01) possibly_damaging(0.856) TCGA-DX-AB2E-01 2 110881436 110881436 G A NPHP1 Missense_Mutation p.H712Y 0.47 deleterious(0.01) probably_damaging(0.996) TCGA-DX-AB2E-01 2 111858426 111858426 G A ACOXL Intron 0.41 TCGA-DX-AB2E-01 2 113333219 113333219 C T POLR1B Silent p.I1107I 0.49 TCGA-DX-AB2E-01 2 113780179 113780179 C T IL36B 3'UTR 0.35 TCGA-DX-AB2E-01 2 114352070 114352070 C A WASH2P RNA 0.15 TCGA-DX-AB2E-01 2 116447290 116447290 T A DPP10 Missense_Mutation p.Y161N 0.23 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 2 118586926 118586926 C T DDX18 Missense_Mutation p.S585L 0.25 deleterious(0) possibly_damaging(0.862) TCGA-DX-AB2E-01 2 118715984 118715984 G A CCDC93 Missense_Mutation p.S321F 0.37 deleterious(0) benign(0.234) TCGA-DX-AB2E-01 2 11966386 11966386 C T LPIN1 3'Flank 0.43 TCGA-DX-AB2E-01 2 119749400 119749400 C T MARCO Missense_Mutation p.P386S 0.19 tolerated(0.67) unknown(0) TCGA-DX-AB2E-01 2 120221760 120221760 T C SCTR Missense_Mutation p.N192S 0.20 deleterious(0.03) benign(0.159) TCGA-DX-AB2E-01 2 127828348 127828348 G A BIN1 Silent p.A70A 0.22 TCGA-DX-AB2E-01 2 131520777 131520777 G A AMER3 Missense_Mutation p.E378K 0.22 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 2 131976158 131976158 G T POTEE Missense_Mutation p.M61I 0.33 deleterious_low_confidence(0) benign(0.019) TCGA-DX-AB2E-01 2 132021747 132021747 G A POTEE Missense_Mutation p.E907K 0.33 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-DX-AB2E-01 2 132287330 132287330 G A CCDC74A Intron 0.33 TCGA-DX-AB2E-01 2 136029338 136029338 C T ZRANB3 Silent p.Q402Q 0.19 TCGA-DX-AB2E-01 2 1371201 1371201 C T SNTG2 Silent p.F525F 0.28 TCGA-DX-AB2E-01 2 137814297 137814297 G A THSD7B Silent p.L149L 0.21 TCGA-DX-AB2E-01 2 138414698 138414698 G A THSD7B Nonsense_Mutation p.W1451* 0.19 TCGA-DX-AB2E-01 2 138434652 138434652 G A THSD7B 3'UTR 0.22 TCGA-DX-AB2E-01 2 140992434 140992434 C T LRP1B Missense_Mutation p.G4527E 0.32 probably_damaging(0.931) TCGA-DX-AB2E-01 2 141232776 141232776 G A LRP1B Missense_Mutation p.R3186C 0.22 benign(0.001) TCGA-DX-AB2E-01 2 141946119 141946119 C T LRP1B Missense_Mutation p.R295Q 0.49 possibly_damaging(0.553) TCGA-DX-AB2E-01 2 141986907 141986907 C T LRP1B Missense_Mutation p.G232E 0.39 probably_damaging(0.931) TCGA-DX-AB2E-01 2 14789596 14789596 C T AC011897.1 3'UTR 0.50 TCGA-DX-AB2E-01 2 1488383 1488383 G A TPO Missense_Mutation p.D452N 0.57 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 2 155555779 155555779 C T KCNJ3 Silent p.F164F 0.12 TCGA-DX-AB2E-01 2 159481744 159481744 G A PKP4 Missense_Mutation p.D320N 0.33 tolerated(0.12) possibly_damaging(0.821) TCGA-DX-AB2E-01 2 163217660 163217660 T C GCA 3'UTR 0.36 TCGA-DX-AB2E-01 2 1652740 1652740 G T PXDN Missense_Mutation p.Q938K 0.21 tolerated(0.58) benign(0.081) TCGA-DX-AB2E-01 2 165946788 165946788 C T SCN3A Missense_Mutation p.D1959N 0.24 tolerated(0.1) probably_damaging(0.971) TCGA-DX-AB2E-01 2 165949021 165949021 C T SCN3A Missense_Mutation p.G1517E 0.34 deleterious(0) probably_damaging(0.992) TCGA-DX-AB2E-01 2 165984416 165984416 G A SCN3A Missense_Mutation p.H1040Y 0.46 tolerated(0.14) benign(0.051) TCGA-DX-AB2E-01 2 166850927 166850927 C T SCN1A Splice_Site p.X1528_splice 0.55 TCGA-DX-AB2E-01 2 167129088 167129088 T C SCN9A Missense_Mutation p.K1047E 0.05 tolerated(0.54) benign(0.047) TCGA-DX-AB2E-01 2 167301398 167301398 C T SCN7A Silent p.R500R 0.26 TCGA-DX-AB2E-01 2 168105327 168105327 G A XIRP2 Silent p.T2475T 0.39 TCGA-DX-AB2E-01 2 170066148 170066148 C T LRP2 Missense_Mutation p.R2095Q 0.33 benign(0.109) TCGA-DX-AB2E-01 2 170093634 170093634 A G LRP2 Missense_Mutation p.L1557P 0.10 probably_damaging(1) TCGA-DX-AB2E-01 2 170937144 170937144 C T UBR3 Silent p.L1833L 0.33 TCGA-DX-AB2E-01 2 170939457 170939457 A G UBR3 3'UTR 0.45 TCGA-DX-AB2E-01 2 171055893 171055893 C T MYO3B Missense_Mutation p.P60S 0.41 tolerated(0.16) benign(0.034) TCGA-DX-AB2E-01 2 171256745 171256745 G A MYO3B Silent p.G613G 0.45 TCGA-DX-AB2E-01 2 171258031 171258031 G A MYO3B Silent p.E653E 0.24 TCGA-DX-AB2E-01 2 172411076 172411076 C T CYBRD1 Silent p.F200F 0.37 TCGA-DX-AB2E-01 2 172644335 172644335 C T SLC25A12 Missense_Mutation p.E570K 0.26 deleterious(0) possibly_damaging(0.803) TCGA-DX-AB2E-01 2 172712396 172712396 G A SLC25A12 Silent p.F91F 0.27 TCGA-DX-AB2E-01 2 173369068 173369068 C T ITGA6 3'UTR 0.40 TCGA-DX-AB2E-01 2 175666464 175666464 G A CHN1 Silent p.T393T 0.41 TCGA-DX-AB2E-01 2 179399755 179399755 C T TTN Missense_Mutation p.E33863K 0.12 TCGA-DX-AB2E-01 2 179426428 179426428 G A TTN Missense_Mutation p.S28144L 0.21 TCGA-DX-AB2E-01 2 179441364 179441364 C T TTN Missense_Mutation p.G23203R 0.11 TCGA-DX-AB2E-01 2 179451983 179451983 C T TTN Missense_Mutation p.E21319K 0.23 TCGA-DX-AB2E-01 2 179458060 179458060 C T TTN Nonsense_Mutation p.W19625* 0.33 TCGA-DX-AB2E-01 2 179477781 179477781 C T TTN Missense_Mutation p.G16556E 0.27 TCGA-DX-AB2E-01 2 179485012 179485012 G A TTN Silent p.C15412C 0.27 TCGA-DX-AB2E-01 2 179494117 179494117 C T TTN Missense_Mutation p.E14779K 0.26 TCGA-DX-AB2E-01 2 179500409 179500409 C T TTN Missense_Mutation p.R13881Q 0.35 TCGA-DX-AB2E-01 2 179571399 179571399 C T TTN Silent p.G9734G 0.21 TCGA-DX-AB2E-01 2 179584349 179584349 C T TTN Missense_Mutation p.G7957E 0.15 TCGA-DX-AB2E-01 2 179592524 179592524 T C TTN Missense_Mutation p.K6594R 0.43 TCGA-DX-AB2E-01 2 179611691 179611691 C T TTN Intron 0.42 TCGA-DX-AB2E-01 2 179637975 179637975 G A TTN Silent p.I2572I 0.48 TCGA-DX-AB2E-01 2 179700673 179700673 C T CCDC141 Intron 0.21 TCGA-DX-AB2E-01 2 17997809 17997809 C T MSGN1 Silent p.F8F 0.21 TCGA-DX-AB2E-01 2 180348039 180348039 G A ZNF385B Silent p.C210C 0.22 TCGA-DX-AB2E-01 2 182543168 182543168 G A NEUROD1 Silent p.I140I 0.41 TCGA-DX-AB2E-01 2 183032974 183032974 T G PDE1A Intron 0.23 TCGA-DX-AB2E-01 2 185731112 185731112 A C ZNF804A Missense_Mutation p.E43A 0.10 deleterious(0.01) probably_damaging(0.956) TCGA-DX-AB2E-01 2 185801484 185801484 C T ZNF804A Missense_Mutation p.S454F 0.25 deleterious(0) probably_damaging(0.986) TCGA-DX-AB2E-01 2 186656683 186656683 T G FSIP2 Missense_Mutation p.I1696S 0.16 benign(0.009) TCGA-DX-AB2E-01 2 186662137 186662137 A T FSIP2 Missense_Mutation p.K3514M 0.23 probably_damaging(0.914) TCGA-DX-AB2E-01 2 186678369 186678369 G A FSIP2 Missense_Mutation p.R6731Q 0.16 probably_damaging(0.996) TCGA-DX-AB2E-01 2 187523819 187523819 C T ITGAV Missense_Mutation p.R592W 0.30 deleterious(0.02) benign(0.009) TCGA-DX-AB2E-01 2 190925009 190925009 G A MSTN Missense_Mutation p.L176F 0.22 deleterious(0.05) possibly_damaging(0.908) TCGA-DX-AB2E-01 2 191845366 191845366 G A STAT1 Missense_Mutation p.P538S 0.17 tolerated(1) benign(0.019) TCGA-DX-AB2E-01 2 192279346 192279346 T C MYO1B Missense_Mutation p.V1037A 0.18 deleterious(0.02) possibly_damaging(0.901) TCGA-DX-AB2E-01 2 192700931 192700931 G A SDPR Silent p.S332S 0.22 TCGA-DX-AB2E-01 2 196740465 196740465 C T DNAH7 Missense_Mutation p.D2074N 0.36 deleterious(0.03) probably_damaging(0.986) TCGA-DX-AB2E-01 2 196746610 196746610 C T DNAH7 Missense_Mutation p.R1957Q 0.21 deleterious(0.02) possibly_damaging(0.563) TCGA-DX-AB2E-01 2 196753051 196753051 C T DNAH7 Silent p.K1779K 0.16 TCGA-DX-AB2E-01 2 196825573 196825573 G A DNAH7 Missense_Mutation p.R768C 0.33 deleterious(0) possibly_damaging(0.846) TCGA-DX-AB2E-01 2 202149906 202149906 G A CASP8 Silent p.T449T 0.27 TCGA-DX-AB2E-01 2 203424889 203424889 T C BMPR2 3'UTR 0.20 TCGA-DX-AB2E-01 2 204735524 204735524 G A CTLA4 Missense_Mutation p.G109R 0.15 tolerated(0.67) benign(0.127) TCGA-DX-AB2E-01 2 206870122 206870122 A T INO80D Nonsense_Mutation p.L685* 0.36 TCGA-DX-AB2E-01 2 207173765 207173765 C T ZDBF2 Missense_Mutation p.P1505S 0.38 tolerated(0.47) possibly_damaging(0.641) TCGA-DX-AB2E-01 2 209113113 209113113 G A IDH1 Missense_Mutation p.R132C 0.57 deleterious_low_confidence(0.03) possibly_damaging(0.907) TCGA-DX-AB2E-01 2 210745768 210745768 C T UNC80 Silent p.L1356L 0.37 TCGA-DX-AB2E-01 2 210800462 210800462 G A UNC80 Missense_Mutation p.G2002E 0.48 probably_damaging(0.999) TCGA-DX-AB2E-01 2 21235194 21235194 C T APOB Missense_Mutation p.G1516R 0.14 probably_damaging(0.999) TCGA-DX-AB2E-01 2 213865011 213865011 T G IKZF2 3'UTR 0.45 TCGA-DX-AB2E-01 2 213870998 213870998 A G IKZF2 3'UTR 0.35 TCGA-DX-AB2E-01 2 215279262 215279262 C T VWC2L Silent p.F115F 0.41 TCGA-DX-AB2E-01 2 219268095 219268095 C T CTDSP1 Silent p.I204I 0.41 TCGA-DX-AB2E-01 2 220131253 220131253 G A TUBA4B RNA 0.26 TCGA-DX-AB2E-01 2 227927264 227927264 C T COL4A4 Missense_Mutation p.G680S 0.19 probably_damaging(0.982) TCGA-DX-AB2E-01 2 228786181 228786181 G A DAW1 Missense_Mutation p.D373N 0.19 tolerated(0.3) benign(0.12) TCGA-DX-AB2E-01 2 229889139 229889139 G A PID1 3'UTR 0.31 TCGA-DX-AB2E-01 2 231103630 231103630 G A SP140 Intron 0.24 TCGA-DX-AB2E-01 2 231103666 231103666 G A SP140 Intron 0.50 TCGA-DX-AB2E-01 2 232234754 232234754 T C ARMC9 RNA 0.42 TCGA-DX-AB2E-01 2 233396255 233396255 C T CHRND Silent p.F312F 0.37 TCGA-DX-AB2E-01 2 234378154 234378154 T C DGKD 3'UTR 0.16 TCGA-DX-AB2E-01 2 234651547 234651547 G A UGT1A10 Intron 0.18 TCGA-DX-AB2E-01 2 235964199 235964199 C T SH3BP4 3'UTR 0.41 TCGA-DX-AB2E-01 2 237416035 237416035 G A IQCA1 5'UTR 0.15 TCGA-DX-AB2E-01 2 241512531 241512531 C T RNPEPL1 5'UTR 0.44 TCGA-DX-AB2E-01 2 241728728 241728728 G T KIF1A Silent p.T36T 0.31 TCGA-DX-AB2E-01 2 241728729 241728729 G T KIF1A Missense_Mutation p.T36N 0.31 deleterious(0) possibly_damaging(0.517) TCGA-DX-AB2E-01 2 241728730 241728730 C G KIF1A Splice_Site p.X36_splice 0.32 TCGA-DX-AB2E-01 2 241835320 241835320 C A C2orf54 Missense_Mutation p.R32L 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-DX-AB2E-01 2 241903041 241903041 G A AC104809.3 Silent p.Q946Q 0.18 TCGA-DX-AB2E-01 2 242039046 242039046 G A MTERFD2 Silent p.V95V 0.39 TCGA-DX-AB2E-01 2 242610849 242610849 C T ATG4B Intron 0.11 TCGA-DX-AB2E-01 2 24507680 24507680 G A ITSN2 Silent p.C632C 0.50 TCGA-DX-AB2E-01 2 26532944 26532944 G A GPR113 Silent p.C1036C 0.59 TCGA-DX-AB2E-01 2 26616077 26616077 C T EPT1 3'UTR 0.28 TCGA-DX-AB2E-01 2 27428924 27428924 C T SLC5A6 Silent p.L183L 0.48 TCGA-DX-AB2E-01 2 27800241 27800241 G A C2orf16 Missense_Mutation p.E268K 0.34 tolerated(0.11) possibly_damaging(0.58) TCGA-DX-AB2E-01 2 3624141 3624141 C G RPS7 Missense_Mutation p.S71C 0.14 deleterious(0) benign(0.097) TCGA-DX-AB2E-01 2 40340954 40340954 C T SLC8A1 3'Flank 0.48 TCGA-DX-AB2E-01 2 40341635 40341635 G A SLC8A1 3'Flank 0.61 TCGA-DX-AB2E-01 2 40405534 40405534 C T SLC8A1 Silent p.E636E 0.51 TCGA-DX-AB2E-01 2 48873756 48873756 G A STON1-GTF2A1L Missense_Mutation p.E889K 0.13 deleterious(0.03) possibly_damaging(0.676) TCGA-DX-AB2E-01 2 48950635 48950635 C A LHCGR Nonsense_Mutation p.G166* 0.39 TCGA-DX-AB2E-01 2 56403037 56403037 G A RP11-481J13.1 Intron 0.45 TCGA-DX-AB2E-01 2 61238942 61238942 G A PUS10 Silent p.F28F 0.21 TCGA-DX-AB2E-01 2 64113605 64113605 C T UGP2 Missense_Mutation p.S335F 0.18 deleterious(0) benign(0.367) TCGA-DX-AB2E-01 2 68361611 68361611 A C WDR92 Intron 0.20 TCGA-DX-AB2E-01 2 70188856 70188856 C T ASPRV1 5'UTR 0.64 TCGA-DX-AB2E-01 2 70188857 70188857 C T ASPRV1 5'UTR 0.62 TCGA-DX-AB2E-01 2 70890802 70890802 C T ADD2 Missense_Mutation p.G646R 0.20 tolerated(0.48) benign(0.054) TCGA-DX-AB2E-01 2 73912407 73912407 G A ALMS1P RNA 0.60 TCGA-DX-AB2E-01 2 74592276 74592276 G A DCTN1 Missense_Mutation p.S1041F 0.35 deleterious(0) probably_damaging(0.928) TCGA-DX-AB2E-01 2 74908069 74908069 C T SEMA4F 3'UTR 0.38 TCGA-DX-AB2E-01 2 80835423 80835423 G A CTNNA2 Missense_Mutation p.G804R 0.35 deleterious(0.04) probably_damaging(0.988) TCGA-DX-AB2E-01 2 84686418 84686418 C T SUCLG1 5'UTR 0.38 TCGA-DX-AB2E-01 2 85032873 85032873 G A DNAH6 Missense_Mutation p.E3856K 0.48 tolerated(0.08) possibly_damaging(0.611) TCGA-DX-AB2E-01 2 87069288 87069288 C T CD8B Intron 0.18 TCGA-DX-AB2E-01 2 87069289 87069289 C T CD8B Intron 0.18 TCGA-DX-AB2E-01 2 97267957 97267957 G A KANSL3 Missense_Mutation p.P793L 0.08 deleterious_low_confidence(0.02) probably_damaging(0.914) TCGA-DX-AB2E-01 2 97427812 97427812 T G CNNM4 Missense_Mutation p.L359R 0.52 deleterious(0) possibly_damaging(0.753) TCGA-DX-AB2E-01 2 97830045 97830045 C T ANKRD36 Silent p.F485F 0.30 TCGA-DX-AB2E-01 2 98809377 98809377 G A VWA3B Missense_Mutation p.D495N 0.22 tolerated(0.34) benign(0.002) TCGA-DX-AB2E-01 2 99012478 99012478 C T CNGA3 Missense_Mutation p.S282F 0.13 deleterious(0.03) benign(0.192) TCGA-DX-AB2E-01 2 99634676 99634676 G A TSGA10 Nonsense_Mutation p.R687* 0.56 TCGA-DX-AB2E-01 3 102136916 102136916 G C ZPLD1 5'UTR 0.09 TCGA-DX-AB2E-01 3 105294314 105294314 C T ALCAM 3'UTR 0.41 TCGA-DX-AB2E-01 3 105400152 105400152 G A CBLB Intron 0.36 TCGA-DX-AB2E-01 3 108175673 108175673 C T MYH15 Missense_Mutation p.G713E 0.44 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 3 108406846 108406846 G A DZIP3 Missense_Mutation p.R1058Q 0.36 tolerated(0.56) benign(0.006) TCGA-DX-AB2E-01 3 108476006 108476006 G A RETNLB Silent p.L9L 0.29 TCGA-DX-AB2E-01 3 108698393 108698393 C T MORC1 Missense_Mutation p.E816K 0.31 tolerated(0.14) benign(0.098) TCGA-DX-AB2E-01 3 109047903 109047903 G A DPPA4 Missense_Mutation p.L238F 0.28 tolerated(0.09) probably_damaging(0.954) TCGA-DX-AB2E-01 3 109136640 109136640 C T RP11-702L6.4 RNA 0.41 TCGA-DX-AB2E-01 3 110612258 110612258 C T RP11-553A10.1 5'UTR 0.40 TCGA-DX-AB2E-01 3 111604063 111604063 G A PHLDB2 Missense_Mutation p.R380K 0.39 tolerated(0.07) benign(0.003) TCGA-DX-AB2E-01 3 111632631 111632631 C T PHLDB2 Intron 0.28 TCGA-DX-AB2E-01 3 112709809 112709809 G A GTPBP8 5'UTR 0.33 TCGA-DX-AB2E-01 3 113046491 113046491 G A WDR52 Missense_Mutation p.S1431F 0.40 deleterious(0.03) benign(0.159) TCGA-DX-AB2E-01 3 119263509 119263509 C T CD80 Silent p.V102V 0.35 TCGA-DX-AB2E-01 3 121340681 121340681 G A FBXO40 Silent p.K135K 0.30 TCGA-DX-AB2E-01 3 121414883 121414883 G A GOLGB1 Missense_Mutation p.S1496F 0.23 probably_damaging(1) TCGA-DX-AB2E-01 3 121415178 121415178 T A GOLGB1 Nonsense_Mutation p.K1398* 0.29 TCGA-DX-AB2E-01 3 121647306 121647306 C T SLC15A2 Silent p.F415F 0.38 TCGA-DX-AB2E-01 3 121712771 121712771 G A ILDR1 Silent p.T275T 0.23 TCGA-DX-AB2E-01 3 121741010 121741010 C T ILDR1 5'UTR 0.31 TCGA-DX-AB2E-01 3 121980842 121980842 C T CASR Silent p.F320F 0.30 TCGA-DX-AB2E-01 3 122004658 122004658 C T CASR 3'UTR 0.36 TCGA-DX-AB2E-01 3 122142235 122142235 C T KPNA1 3'UTR 0.73 TCGA-DX-AB2E-01 3 124951507 124951507 G A ZNF148 Missense_Mutation p.P688L 0.43 tolerated(0.66) benign(0.057) TCGA-DX-AB2E-01 3 126236446 126236446 C T UROC1 Silent p.V39V 0.44 TCGA-DX-AB2E-01 3 126385985 126385985 G A NUP210P1 RNA 0.44 TCGA-DX-AB2E-01 3 127642470 127642470 C T KBTBD12 Missense_Mutation p.S189F 0.33 deleterious(0) possibly_damaging(0.776) TCGA-DX-AB2E-01 3 130292993 130292993 C T COL6A6 Silent p.F1057F 0.45 TCGA-DX-AB2E-01 3 132199252 132199252 A G DNAJC13 Missense_Mutation p.I938V 0.38 tolerated(0.32) benign(0.007) TCGA-DX-AB2E-01 3 133099899 133099899 C T TMEM108 Silent p.S448S 0.52 TCGA-DX-AB2E-01 3 13612323 13612323 C T FBLN2 Silent p.P156P 0.48 TCGA-DX-AB2E-01 3 136240115 136240115 G A STAG1 Missense_Mutation p.L206F 0.43 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2E-01 3 137882228 137882228 G A DBR1 Silent p.L302L 0.36 TCGA-DX-AB2E-01 3 138183346 138183346 G A ESYT3 Missense_Mutation p.E359K 0.42 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 3 140284994 140284994 G A CLSTN2 Missense_Mutation p.E923K 0.33 tolerated(0.23) possibly_damaging(0.625) TCGA-DX-AB2E-01 3 142403136 142403136 C T PLS1 Silent p.L263L 0.25 TCGA-DX-AB2E-01 3 142778643 142778643 A C U2SURP 3'UTR 0.27 TCGA-DX-AB2E-01 3 142985705 142985705 C A SLC9A9 Nonsense_Mutation p.E593* 0.33 TCGA-DX-AB2E-01 3 14529441 14529441 G A SLC6A6 3'UTR 0.49 TCGA-DX-AB2E-01 3 14964629 14964629 G A FGD5 Missense_Mutation p.G1295D 0.40 deleterious(0.03) probably_damaging(0.998) TCGA-DX-AB2E-01 3 150930916 150930916 C T P2RY14 3'UTR 0.40 TCGA-DX-AB2E-01 3 151171541 151171541 T G IGSF10 Missense_Mutation p.K116Q 0.31 deleterious(0.02) probably_damaging(1) TCGA-DX-AB2E-01 3 161221551 161221551 C T OTOL1 Missense_Mutation p.L419F 0.41 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2E-01 3 164697028 164697028 C T SI 3'UTR 0.43 TCGA-DX-AB2E-01 3 164739172 164739172 C T SI Splice_Site p.X1034_splice 0.21 TCGA-DX-AB2E-01 3 168806964 168806964 C T MECOM Missense_Mutation p.E1014K 0.46 tolerated(0.87) benign(0.381) TCGA-DX-AB2E-01 3 168838988 168838988 C T MECOM Missense_Mutation p.D207N 0.35 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2E-01 3 170786725 170786725 C A TNIK Missense_Mutation p.R1204I 0.17 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 3 178543388 178543388 G A KCNMB2 Silent p.Q23Q 0.43 TCGA-DX-AB2E-01 3 184043534 184043534 C T EIF4G1 Intron 0.44 TCGA-DX-AB2E-01 3 186450413 186450413 A - KNG1 Frame_Shift_Del p.N294Tfs*11 0.18 TCGA-DX-AB2E-01 3 186937804 186937804 C T MASP1 3'UTR 0.43 TCGA-DX-AB2E-01 3 187443403 187443403 G A BCL6 Missense_Mutation p.R575C 0.30 deleterious(0) possibly_damaging(0.851) TCGA-DX-AB2E-01 3 187896954 187896954 C T AC022498.1 5'UTR 0.23 TCGA-DX-AB2E-01 3 189587175 189587175 G A TP63 Missense_Mutation p.D398N 0.41 deleterious(0) possibly_damaging(0.493) TCGA-DX-AB2E-01 3 193182748 193182748 T C ATP13A4 Missense_Mutation p.N481S 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-DX-AB2E-01 3 194062012 194062012 C T CPN2 Missense_Mutation p.E474K 0.37 tolerated(0.49) benign(0.055) TCGA-DX-AB2E-01 3 194337953 194337953 G A TMEM44 Silent p.L267L 0.36 TCGA-DX-AB2E-01 3 197610648 197610648 C T LRCH3 3'UTR 0.71 TCGA-DX-AB2E-01 3 25668163 25668163 T C TOP2B Silent p.Q699Q 0.31 TCGA-DX-AB2E-01 3 3146626 3146626 T C IL5RA Missense_Mutation p.T15A 0.28 tolerated(0.6) benign(0.001) TCGA-DX-AB2E-01 3 32932838 32932838 C T TRIM71 Silent p.I714I 0.38 TCGA-DX-AB2E-01 3 32995835 32995835 G A CCR4 Silent p.L307L 0.23 TCGA-DX-AB2E-01 3 32995836 32995836 G A CCR4 Missense_Mutation p.G308R 0.23 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 3 35732379 35732379 C T ARPP21 Nonsense_Mutation p.Q190* 0.42 TCGA-DX-AB2E-01 3 35835271 35835271 C T ARPP21 Nonsense_Mutation p.Q755* 0.30 TCGA-DX-AB2E-01 3 36570342 36570342 G A STAC Silent p.G325G 0.36 TCGA-DX-AB2E-01 3 36873197 36873197 G A TRANK1 Missense_Mutation p.S2582F 0.42 deleterious(0.03) benign(0.013) TCGA-DX-AB2E-01 3 36875281 36875281 G A TRANK1 Silent p.L1887L 0.32 TCGA-DX-AB2E-01 3 36893680 36893680 C T TRANK1 Missense_Mutation p.G1525E 0.41 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 3 37407870 37407870 C T GOLGA4 3'UTR 0.28 TCGA-DX-AB2E-01 3 38589978 38589978 C T SCN5A 3'UTR 0.39 TCGA-DX-AB2E-01 3 38835493 38835493 G A SCN10A Silent p.F3F 0.30 TCGA-DX-AB2E-01 3 38888901 38888901 C T SCN11A Missense_Mutation p.D1554N 0.25 deleterious(0.01) possibly_damaging(0.841) TCGA-DX-AB2E-01 3 38889137 38889137 C T SCN11A Missense_Mutation p.R1475K 0.24 deleterious(0.05) probably_damaging(0.997) TCGA-DX-AB2E-01 3 38924861 38924861 G A SCN11A Missense_Mutation p.P1028S 0.38 deleterious(0.04) benign(0.212) TCGA-DX-AB2E-01 3 38945543 38945543 G A SCN11A Missense_Mutation p.S552F 0.25 tolerated(0.08) probably_damaging(0.94) TCGA-DX-AB2E-01 3 39184660 39184660 G A CSRNP1 Silent p.F552F 0.45 TCGA-DX-AB2E-01 3 42734239 42734239 C T HHATL 3'UTR 0.43 TCGA-DX-AB2E-01 3 42906960 42906960 C T ACKR2 Silent p.Y322Y 0.46 TCGA-DX-AB2E-01 3 42906961 42906961 C T ACKR2 Silent p.L323L 0.44 TCGA-DX-AB2E-01 3 42916565 42916565 C T CYP8B1 Silent p.K248K 0.40 TCGA-DX-AB2E-01 3 44285650 44285650 C T TOPAZ1 Missense_Mutation p.S551F 0.34 deleterious(0.05) benign(0.072) TCGA-DX-AB2E-01 3 46400105 46400105 G A CCR2 Intron 0.43 TCGA-DX-AB2E-01 3 46875510 46875510 C T PRSS42 Missense_Mutation p.A26T 0.38 tolerated(0.49) possibly_damaging(0.811) TCGA-DX-AB2E-01 3 4714890 4714890 C T ITPR1 Nonsense_Mutation p.Q744* 0.48 TCGA-DX-AB2E-01 3 4792929 4792929 C T ITPR1 Intron 0.23 TCGA-DX-AB2E-01 3 50258023 50258023 G A SLC38A3 RNA 0.43 TCGA-DX-AB2E-01 3 51273845 51273845 G A DOCK3 Missense_Mutation p.V663I 0.36 deleterious(0) probably_damaging(0.99) TCGA-DX-AB2E-01 3 51749376 51749376 G A GRM2 Silent p.E529E 0.26 TCGA-DX-AB2E-01 3 51751814 51751814 C T GRM2 Silent p.A842A 0.43 TCGA-DX-AB2E-01 3 52019253 52019254 CC T ACY1 Frame_Shift_Del p.A42Vfs*11 0.33 TCGA-DX-AB2E-01 3 52237962 52237962 C T ALAS1 Nonsense_Mutation p.Q171* 0.32 TCGA-DX-AB2E-01 3 52551894 52551894 C T STAB1 Intron 0.42 TCGA-DX-AB2E-01 3 53699708 53699708 C T CACNA1D Missense_Mutation p.S263F 0.22 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 3 54925446 54925446 C T CACNA2D3 Silent p.L739L 0.33 TCGA-DX-AB2E-01 3 56468889 56468889 G A ERC2 Silent p.I49I 0.43 TCGA-DX-AB2E-01 3 58134560 58134560 C T FLNB Silent p.I2055I 0.27 TCGA-DX-AB2E-01 3 58622108 58622108 C T FAM3D Silent p.G166G 0.20 TCGA-DX-AB2E-01 3 59737921 59737921 G A FHIT 3'UTR 0.35 TCGA-DX-AB2E-01 3 62477055 62477055 G A CADPS Silent p.S995S 0.40 TCGA-DX-AB2E-01 3 62631501 62631501 G A CADPS Silent p.V407V 0.32 TCGA-DX-AB2E-01 3 64502136 64502136 G A ADAMTS9 3'UTR 0.53 TCGA-DX-AB2E-01 3 69168854 69168854 G T LMOD3 Missense_Mutation p.P218T 0.48 tolerated(0.16) probably_damaging(0.986) TCGA-DX-AB2E-01 3 7728066 7728066 G A GRM7 Intron 0.18 TCGA-DX-AB2E-01 3 77542416 77542416 G A ROBO2 Missense_Mutation p.R246K 0.31 deleterious(0.03) benign(0.22) TCGA-DX-AB2E-01 3 77693889 77693889 C T ROBO2 Silent p.F1339F 0.37 TCGA-DX-AB2E-01 3 81699029 81699029 G A GBE1 Missense_Mutation p.S158L 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB2E-01 3 85851283 85851283 G A CADM2 Missense_Mutation p.D52N 0.54 deleterious(0.04) possibly_damaging(0.716) TCGA-DX-AB2E-01 3 86989573 86989573 C T VGLL3 3'UTR 0.37 TCGA-DX-AB2E-01 3 8983159 8983159 A G RAD18 Missense_Mutation p.V199A 0.23 tolerated(0.18) benign(0.005) TCGA-DX-AB2E-01 3 99514510 99514510 G A COL8A1 Missense_Mutation p.G589R 0.29 tolerated(0.1) possibly_damaging(0.65) TCGA-DX-AB2E-01 4 100063861 100063861 G A ADH4 Missense_Mutation p.A30V 0.56 deleterious(0) benign(0.359) TCGA-DX-AB2E-01 4 100264175 100264175 C T ADH1C Missense_Mutation p.G202E 0.63 benign(0.176) TCGA-DX-AB2E-01 4 100340163 100340163 C T ADH7 Nonsense_Mutation p.W334* 0.63 TCGA-DX-AB2E-01 4 100463333 100463333 C T C4orf17 3'UTR 0.65 TCGA-DX-AB2E-01 4 109571745 109571745 G A OSTC 5'Flank 0.48 TCGA-DX-AB2E-01 4 123274193 123274193 C T KIAA1109 Missense_Mutation p.H4662Y 0.70 probably_damaging(0.988) TCGA-DX-AB2E-01 4 123305104 123305104 G A ADAD1 Missense_Mutation p.R171Q 0.61 tolerated(0.3) benign(0.002) TCGA-DX-AB2E-01 4 124322809 124322809 G A SPRY1 Silent p.L21L 0.68 TCGA-DX-AB2E-01 4 128754136 128754136 G T HSPA4L 3'UTR 0.53 TCGA-DX-AB2E-01 4 141590131 141590131 C T TBC1D9 Missense_Mutation p.E510K 0.66 tolerated(0.58) benign(0.031) TCGA-DX-AB2E-01 4 151356812 151356812 G A LRBA Missense_Mutation p.H2335Y 0.56 tolerated(0.08) benign(0.22) TCGA-DX-AB2E-01 4 152571230 152571230 C T FAM160A1 Silent p.I679I 0.51 TCGA-DX-AB2E-01 4 155191119 155191119 C T DCHS2 Silent p.Q1715Q 0.58 TCGA-DX-AB2E-01 4 155241759 155241759 C T DCHS2 Missense_Mutation p.D1143N 0.45 deleterious(0.01) probably_damaging(0.99) TCGA-DX-AB2E-01 4 175649663 175649663 T C GLRA3 Missense_Mutation p.R152G 0.57 deleterious(0.01) probably_damaging(0.992) TCGA-DX-AB2E-01 4 178887828 178887828 G A LINC01098 Splice_Site p.X19_splice 0.55 TCGA-DX-AB2E-01 4 185038021 185038021 C T ENPP6 Silent p.G281G 0.61 TCGA-DX-AB2E-01 4 187171550 187171550 C T KLKB1 Missense_Mutation p.S251L 0.50 tolerated(0.06) possibly_damaging(0.897) TCGA-DX-AB2E-01 4 189012654 189012654 G A TRIML2 Missense_Mutation p.S346F 0.61 tolerated(0.08) possibly_damaging(0.549) TCGA-DX-AB2E-01 4 2251722 2251722 G A MXD4 3'UTR 0.51 TCGA-DX-AB2E-01 4 23803471 23803471 G A PPARGC1A Silent p.T725T 0.52 TCGA-DX-AB2E-01 4 27019330 27019330 C T STIM2 Intron 0.75 TCGA-DX-AB2E-01 4 37440572 37440572 C A KIAA1239 Missense_Mutation p.P286T 0.16 tolerated(0.46) benign(0.004) TCGA-DX-AB2E-01 4 41621210 41621210 G A LIMCH1 Missense_Mutation p.G230R 0.67 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 4 42577716 42577716 C T ATP8A1 Missense_Mutation p.D377N 0.64 deleterious(0) probably_damaging(0.989) TCGA-DX-AB2E-01 4 46053608 46053608 T A GABRG1 Nonsense_Mutation p.K322* 0.09 TCGA-DX-AB2E-01 4 48834668 48834668 G A OCIAD1 Silent p.E9E 0.40 TCGA-DX-AB2E-01 4 52743988 52743988 A T DCUN1D4 Missense_Mutation p.K104I 0.35 deleterious(0) probably_damaging(0.99) TCGA-DX-AB2E-01 4 53579716 53579716 C T DANCR RNA 0.60 TCGA-DX-AB2E-01 4 56230200 56230200 C T SRD5A3 Intron 0.35 TCGA-DX-AB2E-01 4 56897767 56897767 T A CEP135 3'UTR 0.25 TCGA-DX-AB2E-01 4 651206 651206 G A PDE6B Missense_Mutation p.E442K 0.67 deleterious(0.04) probably_damaging(0.998) TCGA-DX-AB2E-01 4 68939712 68939712 G A TMPRSS11F Nonsense_Mutation p.R100* 0.56 TCGA-DX-AB2E-01 4 69100305 69100305 C T TMPRSS11B Silent p.L115L 0.65 TCGA-DX-AB2E-01 4 69811118 69811118 C T UGT2A3 Missense_Mutation p.R257Q 0.78 deleterious(0.02) possibly_damaging(0.477) TCGA-DX-AB2E-01 4 71255826 71255826 C T SMR3B 3'UTR 0.50 TCGA-DX-AB2E-01 4 71509597 71509597 G A ENAM Silent p.Q818Q 0.64 TCGA-DX-AB2E-01 4 71655383 71655383 G A RUFY3 Intron 0.68 TCGA-DX-AB2E-01 4 73205402 73205402 G A ADAMTS3 Silent p.L224L 0.70 TCGA-DX-AB2E-01 4 74285242 74285242 G A ALB Silent p.V557V 0.47 TCGA-DX-AB2E-01 4 77290759 77290759 C T CCDC158 Silent p.R389R 0.53 TCGA-DX-AB2E-01 4 79507444 79507444 G A ANXA3 Missense_Mutation p.E115K 0.57 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 4 82125774 82125774 G A PRKG2 Missense_Mutation p.S143F 0.49 tolerated(0.18) possibly_damaging(0.643) TCGA-DX-AB2E-01 4 89020483 89020483 G A ABCG2 Silent p.F495F 0.64 TCGA-DX-AB2E-01 4 94376855 94376855 C T GRID2 Missense_Mutation p.R530C 0.52 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 4 998110 998110 C T IDUA Missense_Mutation p.P631S 0.60 tolerated(0.66) probably_damaging(0.998) TCGA-DX-AB2E-01 5 100231446 100231446 C T ST8SIA4 Missense_Mutation p.D53N 0.42 benign(0) TCGA-DX-AB2E-01 5 101631964 101631964 C T SLCO4C1 Translation_Start_Site p.M1? 0.62 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-DX-AB2E-01 5 115782667 115782667 T A SEMA6A Missense_Mutation p.Y912F 0.53 tolerated(0.58) probably_damaging(0.995) TCGA-DX-AB2E-01 5 121779348 121779348 C T SNCAIP Intron 0.51 TCGA-DX-AB2E-01 5 1244846 1244846 G A SLC6A18 Nonsense_Mutation p.W540* 0.48 TCGA-DX-AB2E-01 5 13735348 13735348 G A DNAH5 Nonsense_Mutation p.R3885* 0.51 TCGA-DX-AB2E-01 5 13770872 13770872 C T DNAH5 Silent p.R3197R 0.49 TCGA-DX-AB2E-01 5 139743761 139743761 C T SLC4A9 Silent p.F483F 0.25 TCGA-DX-AB2E-01 5 140580852 140580852 C T PCDHB11 Missense_Mutation p.S502F 0.56 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DX-AB2E-01 5 141318195 141318195 G A KIAA0141 Silent p.S473S 0.80 TCGA-DX-AB2E-01 5 14507316 14507316 C T TRIO Silent p.L2900L 0.31 TCGA-DX-AB2E-01 5 146971234 146971234 C T JAKMIP2 Missense_Mutation p.G810R 0.59 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-DX-AB2E-01 5 147889037 147889037 C T HTR4 Missense_Mutation p.G353E 0.35 deleterious(0.01) probably_damaging(0.971) TCGA-DX-AB2E-01 5 149933961 149933961 C T NDST1 3'UTR 0.59 TCGA-DX-AB2E-01 5 151771705 151771705 C T NMUR2 3'UTR 0.61 TCGA-DX-AB2E-01 5 15937163 15937163 C T FBXL7 Silent p.I448I 0.54 TCGA-DX-AB2E-01 5 161324551 161324551 C T GABRA1 3'UTR 0.42 TCGA-DX-AB2E-01 5 167956784 167956784 G A FBLL1 Missense_Mutation p.R92K 0.46 tolerated(0.74) benign(0.032) TCGA-DX-AB2E-01 5 168671750 168671750 G A SLIT3 Silent p.I100I 0.45 TCGA-DX-AB2E-01 5 169810766 169810766 G A KCNMB1 Missense_Mutation p.P75S 0.64 deleterious(0.04) benign(0.303) TCGA-DX-AB2E-01 5 175956000 175956000 G A RNF44 3'UTR 0.60 TCGA-DX-AB2E-01 5 176301357 176301357 C T UNC5A Missense_Mutation p.P390S 0.46 tolerated(0.22) benign(0.002) TCGA-DX-AB2E-01 5 178585761 178585761 G A ADAMTS2 Silent p.F365F 0.49 TCGA-DX-AB2E-01 5 22078924 22078924 C T CDH12 5'UTR 0.42 TCGA-DX-AB2E-01 5 26881005 26881005 T A CDH9 3'UTR 0.54 TCGA-DX-AB2E-01 5 32724867 32724867 G A NPR3 Missense_Mutation p.G278D 0.62 deleterious(0.02) probably_damaging(0.912) TCGA-DX-AB2E-01 5 32790294 32790294 G A NPR3 3'UTR 0.31 TCGA-DX-AB2E-01 5 35025909 35025909 C T AGXT2 Missense_Mutation p.E308K 0.23 tolerated(0.38) benign(0.012) TCGA-DX-AB2E-01 5 35068970 35068970 C T PRLR Missense_Mutation p.M232I 0.19 tolerated(0.27) benign(0.048) TCGA-DX-AB2E-01 5 35084606 35084606 G A PRLR Silent p.F113F 0.22 TCGA-DX-AB2E-01 5 35086389 35086389 C T PRLR Missense_Mutation p.E42K 0.42 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 5 36103934 36103934 G A LMBRD2 3'UTR 0.23 TCGA-DX-AB2E-01 5 37752596 37752596 C T WDR70 Missense_Mutation p.P629L 0.21 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 5 38403793 38403793 G A EGFLAM Intron 0.29 TCGA-DX-AB2E-01 5 41005013 41005013 C T MROH2B Missense_Mutation p.E1292K 0.23 deleterious(0.04) possibly_damaging(0.891) TCGA-DX-AB2E-01 5 44305142 44305142 C T FGF10 Silent p.R194R 0.38 TCGA-DX-AB2E-01 5 52340882 52340882 G A ITGA2 Missense_Mutation p.G116D 0.51 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 5 54593193 54593193 T A DHX29 Missense_Mutation p.I99F 0.57 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-DX-AB2E-01 5 54593194 54593194 A T DHX29 Silent p.I98I 0.57 TCGA-DX-AB2E-01 5 55075804 55075804 G A DDX4 Missense_Mutation p.G136E 0.65 tolerated_low_confidence(0.34) probably_damaging(1) TCGA-DX-AB2E-01 5 6337372 6337372 C T CTD-2324F15.2 RNA 0.22 TCGA-DX-AB2E-01 5 6668462 6668462 T C SRD5A1 3'UTR 0.60 TCGA-DX-AB2E-01 5 75911898 75911898 G A F2RL2 3'UTR 0.61 TCGA-DX-AB2E-01 5 79031081 79031081 G A CMYA5 Missense_Mutation p.D2165N 0.41 benign(0.021) TCGA-DX-AB2E-01 5 83238757 83238757 T C EDIL3 3'UTR 0.56 TCGA-DX-AB2E-01 5 83362411 83362411 C T EDIL3 Silent p.R222R 0.59 TCGA-DX-AB2E-01 5 94001632 94001632 C T ANKRD32 Missense_Mutation p.P479S 0.45 deleterious(0.02) benign(0.295) TCGA-DX-AB2E-01 5 94259673 94259673 A G MCTP1 Silent p.F422F 0.58 TCGA-DX-AB2E-01 5 94275850 94275850 C T MCTP1 Missense_Mutation p.D371N 0.67 tolerated(0.06) benign(0.302) TCGA-DX-AB2E-01 5 95757591 95757591 C T PCSK1 Missense_Mutation p.E205K 0.43 tolerated(0.05) probably_damaging(0.991) TCGA-DX-AB2E-01 6 100898230 100898230 G A SIM1 Silent p.T87T 0.31 TCGA-DX-AB2E-01 6 107585650 107585650 A G PDSS2 Intron 0.33 TCGA-DX-AB2E-01 6 107980860 107980860 G A SOBP 3'UTR 0.44 TCGA-DX-AB2E-01 6 110551640 110551640 C T CDC40 3'UTR 0.41 TCGA-DX-AB2E-01 6 11185447 11185447 G A NEDD9 Missense_Mutation p.S818F 0.54 deleterious(0) probably_damaging(0.982) TCGA-DX-AB2E-01 6 112462089 112462089 G A LAMA4 Missense_Mutation p.P950L 0.28 deleterious(0) probably_damaging(0.932) TCGA-DX-AB2E-01 6 117589462 117589462 G A VGLL2 Missense_Mutation p.E67K 0.29 deleterious(0.02) benign(0.11) TCGA-DX-AB2E-01 6 119345477 119345477 C T FAM184A Missense_Mutation p.E221K 0.30 tolerated(0.14) benign(0.138) TCGA-DX-AB2E-01 6 123318658 123318658 G A CLVS2 5'UTR 0.50 TCGA-DX-AB2E-01 6 128291379 128291379 G A PTPRK Missense_Mutation p.S1445L 0.38 deleterious_low_confidence(0) benign(0.053) TCGA-DX-AB2E-01 6 128316681 128316681 C T PTPRK Missense_Mutation p.D924N 0.22 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2E-01 6 130454605 130454605 G A L3MBTL3 Missense_Mutation p.E659K 0.41 tolerated(0.49) benign(0.02) TCGA-DX-AB2E-01 6 130462209 130462209 T A L3MBTL3 3'UTR 0.50 TCGA-DX-AB2E-01 6 130462210 130462210 C T L3MBTL3 3'UTR 0.50 TCGA-DX-AB2E-01 6 131222099 131222099 G A EPB41L2 Intron 0.43 TCGA-DX-AB2E-01 6 133052551 133052551 A C VNN3 Intron 0.18 TCGA-DX-AB2E-01 6 134142646 134142646 C T RP4-662A9.2 RNA 0.22 TCGA-DX-AB2E-01 6 136508238 136508238 C T PDE7B Silent p.I370I 0.32 TCGA-DX-AB2E-01 6 136667182 136667182 C T MAP7 Missense_Mutation p.G706D 0.39 deleterious(0) unknown(0) TCGA-DX-AB2E-01 6 136944022 136944022 C T MAP3K5 Missense_Mutation p.R705K 0.27 deleterious(0.03) benign(0.09) TCGA-DX-AB2E-01 6 138612978 138612978 C T KIAA1244 Silent p.L1052L 0.39 TCGA-DX-AB2E-01 6 146757803 146757803 T C GRM1 3'UTR 0.21 TCGA-DX-AB2E-01 6 151894524 151894524 C T CCDC170 Silent p.I330I 0.24 TCGA-DX-AB2E-01 6 154751693 154751693 T G CNKSR3 Silent p.T194T 0.32 TCGA-DX-AB2E-01 6 16147338 16147338 T - MYLIP 3'Flank 0.29 TCGA-DX-AB2E-01 6 163235240 163235240 G A PACRG Missense_Mutation p.R73Q 0.40 deleterious(0) probably_damaging(0.994) TCGA-DX-AB2E-01 6 165846605 165846605 G A PDE10A Missense_Mutation p.P184S 0.22 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2E-01 6 24447086 24447086 C T GPLD1 Silent p.P600P 0.39 TCGA-DX-AB2E-01 6 24460571 24460571 C T GPLD1 Missense_Mutation p.S315N 0.41 tolerated(0.56) benign(0) TCGA-DX-AB2E-01 6 25492028 25492028 C T LRRC16A Silent p.S378S 0.18 TCGA-DX-AB2E-01 6 26031889 26031889 C T HIST1H3B Missense_Mutation p.E134K 0.21 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-DX-AB2E-01 6 27792237 27792237 G A HIST1H4J 3'UTR 0.42 TCGA-DX-AB2E-01 6 28056768 28056768 C T ZNF165 Silent p.F326F 0.35 TCGA-DX-AB2E-01 6 28501888 28501894 GTCAGCT - GPX5 Frame_Shift_Del p.V204Qfs*10 0.42 TCGA-DX-AB2E-01 6 28872289 28872289 A T TRIM27 Missense_Mutation p.I367N 0.32 deleterious(0.02) benign(0.029) TCGA-DX-AB2E-01 6 28872290 28872290 T C TRIM27 Missense_Mutation p.I367V 0.32 tolerated(0.86) benign(0) TCGA-DX-AB2E-01 6 29431694 29431694 C T OR2H1 3'UTR 0.35 TCGA-DX-AB2E-01 6 29431923 29431923 G A OR2H1 3'UTR 0.47 TCGA-DX-AB2E-01 6 31129449 31129449 C T TCF19 Missense_Mutation p.S155F 0.31 deleterious(0.04) benign(0.068) TCGA-DX-AB2E-01 6 31513150 31513150 G A ATP6V1G2 3'UTR 0.41 TCGA-DX-AB2E-01 6 31526089 31526089 G A NFKBIL1 Missense_Mutation p.E283K 0.34 tolerated(0.86) benign(0) TCGA-DX-AB2E-01 6 31926888 31926888 C T SKIV2L 5'UTR 0.47 TCGA-DX-AB2E-01 6 31948444 31948444 C T STK19 Silent p.V309V 0.41 TCGA-DX-AB2E-01 6 32039915 32039915 C T TNXB Silent p.R1614R 0.20 TCGA-DX-AB2E-01 6 32053875 32053875 A G TNXB Silent p.L934L 0.35 TCGA-DX-AB2E-01 6 33177437 33177437 C T RING1 Missense_Mutation p.S38F 0.19 deleterious(0) possibly_damaging(0.867) TCGA-DX-AB2E-01 6 348136 348136 G A DUSP22 Silent p.V99V 0.20 TCGA-DX-AB2E-01 6 35471347 35471347 G A TULP1 Missense_Mutation p.R438W 0.20 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 6 35965594 35965594 G A SLC26A8 Missense_Mutation p.S183L 0.34 deleterious(0) possibly_damaging(0.509) TCGA-DX-AB2E-01 6 36269799 36269799 G A PNPLA1 Missense_Mutation p.E313K 0.36 deleterious(0.05) benign(0.055) TCGA-DX-AB2E-01 6 36287154 36287154 G A C6orf222 Silent p.F634F 0.29 TCGA-DX-AB2E-01 6 37613720 37613720 G A MDGA1 Missense_Mutation p.P746L 0.26 deleterious(0.03) possibly_damaging(0.557) TCGA-DX-AB2E-01 6 38877410 38877410 C T DNAH8 Silent p.F2993F 0.51 TCGA-DX-AB2E-01 6 41090970 41090970 G A ADCY10P1 RNA 0.20 TCGA-DX-AB2E-01 6 41095319 41095319 C T ADCY10P1 RNA 0.48 TCGA-DX-AB2E-01 6 42231058 42231058 G A TRERF1 Silent p.L628L 0.37 TCGA-DX-AB2E-01 6 45516508 45516508 A T RUNX2 3'UTR 0.42 TCGA-DX-AB2E-01 6 46129190 46129190 C T ENPP5 Missense_Mutation p.G436E 0.33 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 6 47650309 47650309 G A GPR111 Missense_Mutation p.D672N 0.32 tolerated(0.13) benign(0.024) TCGA-DX-AB2E-01 6 49416591 49416591 T C MUT Missense_Mutation p.E461G 0.42 deleterious_low_confidence(0.01) benign(0.204) TCGA-DX-AB2E-01 6 49519419 49519419 G A C6orf141 3'UTR 0.49 TCGA-DX-AB2E-01 6 49936529 49936529 A G DEFB113 Missense_Mutation p.L37P 0.23 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-DX-AB2E-01 6 53989330 53989330 G A MLIP Silent p.A93A 0.43 TCGA-DX-AB2E-01 6 54806428 54806428 C T FAM83B Missense_Mutation p.P887S 0.19 tolerated(0.06) probably_damaging(1) TCGA-DX-AB2E-01 6 54806762 54806762 G A FAM83B Missense_Mutation p.G998E 0.26 tolerated(0.09) probably_damaging(0.948) TCGA-DX-AB2E-01 6 55739785 55739785 C T BMP5 5'UTR 0.53 TCGA-DX-AB2E-01 6 57017092 57017092 C T ZNF451 Silent p.F942F 0.17 TCGA-DX-AB2E-01 6 57054454 57054454 C T BAG2 3'UTR 0.37 TCGA-DX-AB2E-01 6 62389994 62389994 T G KHDRBS2 3'UTR 0.20 TCGA-DX-AB2E-01 6 64574181 64574181 C T EYS Missense_Mutation p.E2376K 0.22 deleterious(0.01) possibly_damaging(0.86) TCGA-DX-AB2E-01 6 65327356 65327356 C T EYS Missense_Mutation p.M1213I 0.48 tolerated(0.95) benign(0) TCGA-DX-AB2E-01 6 65531597 65531597 C T EYS Missense_Mutation p.E1062K 0.32 tolerated(0.85) benign(0) TCGA-DX-AB2E-01 6 66053984 66053984 C T EYS Missense_Mutation p.D516N 0.38 tolerated(0.5) benign(0) TCGA-DX-AB2E-01 6 69728293 69728293 G A BAI3 Missense_Mutation p.G670E 0.28 deleterious(0) possibly_damaging(0.81) TCGA-DX-AB2E-01 6 70098718 70098718 G A BAI3 Missense_Mutation p.E1502K 0.35 deleterious(0.01) probably_damaging(0.98) TCGA-DX-AB2E-01 6 7326977 7326977 C T CAGE1 3'UTR 0.28 TCGA-DX-AB2E-01 6 73751664 73751664 C T KCNQ5 Silent p.F165F 0.49 TCGA-DX-AB2E-01 6 73787510 73787510 G A KCNQ5 Missense_Mutation p.G273E 0.24 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 6 73904753 73904753 G A KCNQ5 Silent p.R824R 0.24 TCGA-DX-AB2E-01 6 75994506 75994506 G A TMEM30A 5'UTR 0.43 TCGA-DX-AB2E-01 6 76713655 76713655 G A IMPG1 Missense_Mutation p.S383L 0.25 tolerated(0.58) benign(0.009) TCGA-DX-AB2E-01 6 76731937 76731937 C T IMPG1 Splice_Site p.X188_splice 0.27 TCGA-DX-AB2E-01 6 80878666 80878666 C T BCKDHB Silent p.S184S 0.29 TCGA-DX-AB2E-01 6 84350864 84350864 C T SNAP91 Missense_Mutation p.R239Q 0.26 deleterious(0) unknown(0) TCGA-DX-AB2E-01 6 84569507 84569507 G A CYB5R4 Silent p.L2L 0.21 TCGA-DX-AB2E-01 6 88854166 88854166 C T CNR1 Silent p.L276L 0.44 TCGA-DX-AB2E-01 6 89899896 89899896 C T GABRR1 Missense_Mutation p.E215K 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-DX-AB2E-01 6 90357806 90357806 C T MDN1 Missense_Mutation p.G5447E 0.36 unknown(0) TCGA-DX-AB2E-01 6 90660542 90660542 C A BACH2 Missense_Mutation p.R428L 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB2E-01 6 96651317 96651317 G A FUT9 Missense_Mutation p.D96N 0.62 tolerated(0.08) probably_damaging(0.951) TCGA-DX-AB2E-01 6 96651363 96651363 G A FUT9 Missense_Mutation p.R111Q 0.61 deleterious(0.01) probably_damaging(0.994) TCGA-DX-AB2E-01 6 96655634 96655634 G A FUT9 3'UTR 0.31 TCGA-DX-AB2E-01 6 96656071 96656071 G A FUT9 3'UTR 0.22 TCGA-DX-AB2E-01 6 96657185 96657185 G A FUT9 3'UTR 0.25 TCGA-DX-AB2E-01 6 96660960 96660960 C T FUT9 3'UTR 0.41 TCGA-DX-AB2E-01 6 96662440 96662440 C T FUT9 3'UTR 0.27 TCGA-DX-AB2E-01 7 100170370 100170370 G A SAP25 Silent p.F74F 0.36 TCGA-DX-AB2E-01 7 100212794 100212794 C T MOSPD3 Silent p.F232F 0.39 TCGA-DX-AB2E-01 7 100610379 100610379 C T MUC3A 3'UTR 0.10 TCGA-DX-AB2E-01 7 1024181 1024181 C T CYP2W1 Missense_Mutation p.A103V 0.27 deleterious(0) possibly_damaging(0.574) TCGA-DX-AB2E-01 7 102523910 102523910 A G FBXL13 Silent p.N410N 0.33 TCGA-DX-AB2E-01 7 103126803 103126803 G A RELN Missense_Mutation p.S3275F 0.41 deleterious(0) possibly_damaging(0.541) TCGA-DX-AB2E-01 7 117365191 117365191 G A CTTNBP2 Silent p.S1392S 0.25 TCGA-DX-AB2E-01 7 119914559 119914559 G A KCND2 5'UTR 0.40 TCGA-DX-AB2E-01 7 12410124 12410124 C T VWDE Missense_Mutation p.G603E 0.43 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 7 126746678 126746678 G A GRM8 Missense_Mutation p.S200F 0.43 tolerated(0.37) probably_damaging(0.958) TCGA-DX-AB2E-01 7 127253567 127253567 A G PAX4 Silent p.Y186Y 0.38 TCGA-DX-AB2E-01 7 128034581 128034581 G A IMPDH1 Silent p.F541F 0.27 TCGA-DX-AB2E-01 7 129856077 129856077 G A SSMEM1 Missense_Mutation p.E168K 0.22 deleterious(0) possibly_damaging(0.486) TCGA-DX-AB2E-01 7 131825507 131825507 C T PLXNA4 Silent p.K1763K 0.35 TCGA-DX-AB2E-01 7 137791357 137791357 G T AKR1D1 Nonsense_Mutation p.E195* 0.27 TCGA-DX-AB2E-01 7 137801424 137801424 G A AKR1D1 3'UTR 0.29 TCGA-DX-AB2E-01 7 139107185 139107185 A G LUC7L2 3'UTR 0.27 TCGA-DX-AB2E-01 7 141315323 141315323 G - AGK Frame_Shift_Del p.S159Ifs*2 0.25 TCGA-DX-AB2E-01 7 141705366 141705366 G A MGAM Silent p.L12L 0.30 TCGA-DX-AB2E-01 7 141843738 141843738 C T RP11-1220K2.2 3'UTR 0.26 TCGA-DX-AB2E-01 7 141897286 141897286 C T RP11-1220K2.2 Silent p.L1573L 0.17 TCGA-DX-AB2E-01 7 141952291 141952291 C T PRSS58 Splice_Site p.X192_splice 0.24 TCGA-DX-AB2E-01 7 142028503 142028503 C T TRBV6-1 Silent p.V79V 0.32 TCGA-DX-AB2E-01 7 142111411 142111411 G A TRBV5-7 Missense_Mutation p.L109F 0.33 tolerated(0.18) possibly_damaging(0.692) TCGA-DX-AB2E-01 7 142139476 142139476 G A TRBV7-6 Missense_Mutation p.S50F 0.30 tolerated(0.69) benign(0.002) TCGA-DX-AB2E-01 7 142176605 142176605 G A TRBV7-4 Missense_Mutation p.S24F 0.24 deleterious(0.05) possibly_damaging(0.78) TCGA-DX-AB2E-01 7 142197673 142197673 C T TRBV11-2 RNA 0.24 TCGA-DX-AB2E-01 7 142206948 142206948 G A TRBV10-2 Missense_Mutation p.L5F 0.37 deleterious(0.03) benign(0.056) TCGA-DX-AB2E-01 7 142481124 142481124 C T PRSS3P2 Intron 0.26 TCGA-DX-AB2E-01 7 142612506 142612506 C T TRPV5 Silent p.T419T 0.24 TCGA-DX-AB2E-01 7 146825907 146825907 G A CNTNAP2 Silent p.K354K 0.27 TCGA-DX-AB2E-01 7 148117977 148117977 G A CNTNAP2 3'UTR 0.29 TCGA-DX-AB2E-01 7 148767611 148767611 G A ZNF786 Silent p.I751I 0.19 TCGA-DX-AB2E-01 7 149128762 149128762 G A ZNF777 3'UTR 0.32 TCGA-DX-AB2E-01 7 149461392 149461392 G A ZNF467 3'Flank 0.36 TCGA-DX-AB2E-01 7 150269562 150269562 A C GIMAP4 Missense_Mutation p.E135A 0.19 tolerated(0.1) possibly_damaging(0.626) TCGA-DX-AB2E-01 7 150327158 150327158 C T GIMAP6 Missense_Mutation p.E25K 0.24 tolerated(0.14) benign(0.084) TCGA-DX-AB2E-01 7 150327159 150327159 C T GIMAP6 Silent p.L24L 0.24 TCGA-DX-AB2E-01 7 150554581 150554581 C T AOC1 Silent p.F341F 0.17 TCGA-DX-AB2E-01 7 150878388 150878388 C T ASB10 Missense_Mutation p.G248S 0.41 deleterious(0) possibly_damaging(0.542) TCGA-DX-AB2E-01 7 1533470 1533470 C A INTS1 Missense_Mutation p.R663L 0.58 deleterious(0) possibly_damaging(0.86) TCGA-DX-AB2E-01 7 154751628 154751628 G A PAXIP1 Missense_Mutation p.P817L 0.23 deleterious(0) unknown(0) TCGA-DX-AB2E-01 7 154774975 154774975 G A PAXIP1 Missense_Mutation p.T131I 0.33 tolerated(0.06) benign(0.18) TCGA-DX-AB2E-01 7 157931050 157931050 G A PTPRN2 Silent p.A356A 0.30 TCGA-DX-AB2E-01 7 1785520 1785520 G A ELFN1 Missense_Mutation p.V430M 0.38 deleterious(0) probably_damaging(0.988) TCGA-DX-AB2E-01 7 20668438 20668438 G A ABCB5 Missense_Mutation p.G79E 0.50 tolerated(0.22) benign(0.005) TCGA-DX-AB2E-01 7 23351707 23351707 G A IGF2BP3 3'UTR 0.25 TCGA-DX-AB2E-01 7 23741915 23741915 C T FAM221A 3'UTR 0.52 TCGA-DX-AB2E-01 7 2486338 2486338 C T AC004840.9 RNA 0.24 TCGA-DX-AB2E-01 7 26412551 26412551 C T SNX10 3'UTR 0.21 TCGA-DX-AB2E-01 7 27181527 27181527 C T HOXA5 Missense_Mutation p.R247K 0.17 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 7 27192766 27192766 G A HOXA7 3'Flank 0.47 TCGA-DX-AB2E-01 7 28860685 28860685 C T CREB5 3'UTR 0.46 TCGA-DX-AB2E-01 7 2987421 2987421 C T CARD11 Missense_Mutation p.G3E 0.53 deleterious_low_confidence(0.01) probably_damaging(0.929) TCGA-DX-AB2E-01 7 30793389 30793389 C T INMT Missense_Mutation p.P66L 0.25 deleterious(0.02) probably_damaging(1) TCGA-DX-AB2E-01 7 30911898 30911898 G A FAM188B Missense_Mutation p.G596R 0.19 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2E-01 7 31617799 31617802 TCAT - CCDC129 Frame_Shift_Del p.H334Cfs*5 0.12 TCGA-DX-AB2E-01 7 31887593 31887593 C T PDE1C Silent p.K383K 0.15 TCGA-DX-AB2E-01 7 36194630 36194630 C T EEPD1 Silent p.L233L 0.20 TCGA-DX-AB2E-01 7 36324296 36324296 G T EEPD1 Missense_Mutation p.G348V 0.50 deleterious(0.04) benign(0.358) TCGA-DX-AB2E-01 7 39612146 39612146 C T YAE1D1 Silent p.S174S 0.16 TCGA-DX-AB2E-01 7 44530334 44530334 C T NUDCD3 5'UTR 0.64 TCGA-DX-AB2E-01 7 45122646 45122646 G A NACAD Missense_Mutation p.L1045F 0.31 deleterious(0.01) probably_damaging(0.931) TCGA-DX-AB2E-01 7 45754107 45754107 G A ADCY1 3'UTR 0.29 TCGA-DX-AB2E-01 7 47851500 47851500 C T PKD1L1 Missense_Mutation p.G2499E 0.16 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 7 4950810 4950810 C T MMD2 Missense_Mutation p.V145M 0.30 tolerated(0.21) possibly_damaging(0.594) TCGA-DX-AB2E-01 7 5161484 5161484 G A ZNF890P RNA 0.28 TCGA-DX-AB2E-01 7 5401627 5401627 G A TNRC18 Missense_Mutation p.A1478V 0.27 probably_damaging(0.967) TCGA-DX-AB2E-01 7 66420590 66420590 C T TMEM248 3'UTR 0.37 TCGA-DX-AB2E-01 7 6728555 6728555 A C ZNF12 3'UTR 0.20 TCGA-DX-AB2E-01 7 69755362 69755362 G A AUTS2 Intron 0.39 TCGA-DX-AB2E-01 7 71036341 71036341 C T WBSCR17 Missense_Mutation p.P345L 0.26 tolerated(0.08) benign(0.059) TCGA-DX-AB2E-01 7 72657937 72657937 C T GTF2IRD2P1 RNA 0.23 TCGA-DX-AB2E-01 7 73245979 73245979 C T CLDN4 Missense_Mutation p.P150S 0.29 deleterious(0.02) possibly_damaging(0.846) TCGA-DX-AB2E-01 7 73536566 73536566 T A LIMK1 3'UTR 0.37 TCGA-DX-AB2E-01 7 76029867 76029867 G A SRCRB4D Silent p.L71L 0.30 TCGA-DX-AB2E-01 7 76029868 76029868 G A SRCRB4D Silent p.R70R 0.30 TCGA-DX-AB2E-01 7 81207581 81207581 T C AC010091.1 RNA 0.35 TCGA-DX-AB2E-01 7 8125883 8125883 C T GLCCI1 Silent p.F453F 0.59 TCGA-DX-AB2E-01 7 8127272 8127272 T G GLCCI1 3'UTR 0.19 TCGA-DX-AB2E-01 7 81667533 81667533 C T CACNA2D1 Missense_Mutation p.D300N 0.31 tolerated(0.49) benign(0.002) TCGA-DX-AB2E-01 7 82451789 82451789 G A PCLO Intron 0.20 TCGA-DX-AB2E-01 7 82584459 82584459 C T PCLO Missense_Mutation p.R1937Q 0.23 unknown(0) TCGA-DX-AB2E-01 7 82585580 82585580 C T PCLO Missense_Mutation p.M1563I 0.26 unknown(0) TCGA-DX-AB2E-01 7 857107 857107 C T SUN1 Missense_Mutation p.S5F 0.51 deleterious_low_confidence(0) unknown(0) TCGA-DX-AB2E-01 7 86394606 86394606 G A GRM3 Missense_Mutation p.E49K 0.23 tolerated(0.22) possibly_damaging(0.731) TCGA-DX-AB2E-01 7 86468384 86468384 G A GRM3 Missense_Mutation p.M518I 0.21 tolerated(0.73) benign(0.004) TCGA-DX-AB2E-01 7 94898568 94898568 C T PPP1R9A Missense_Mutation p.P958L 0.40 tolerated(0.07) benign(0.318) TCGA-DX-AB2E-01 7 97617774 97617774 A G OCM2 Missense_Mutation p.F50L 0.25 deleterious(0.02) benign(0) TCGA-DX-AB2E-01 7 97833498 97833498 G A LMTK2 Missense_Mutation p.G1495R 0.15 deleterious(0) probably_damaging(0.981) TCGA-DX-AB2E-01 7 98606040 98606040 G A TRRAP Silent p.V3584V 0.31 TCGA-DX-AB2E-01 7 98606041 98606041 G A TRRAP Missense_Mutation p.E3585K 0.35 possibly_damaging(0.697) TCGA-DX-AB2E-01 7 98786157 98786157 G T KPNA7 Silent p.T222T 0.21 TCGA-DX-AB2E-01 7 99367474 99367474 G A CYP3A4 Silent p.V146V 0.24 TCGA-DX-AB2E-01 8 101083692 101083692 G A RGS22 Missense_Mutation p.P167S 0.29 deleterious(0.03) benign(0.197) TCGA-DX-AB2E-01 8 101721931 101721931 C T PABPC1 Missense_Mutation p.G334E 0.29 deleterious(0) probably_damaging(0.994) TCGA-DX-AB2E-01 8 101721932 101721932 C T PABPC1 Missense_Mutation p.G334R 0.28 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2E-01 8 106814453 106814453 G A ZFPM2 Missense_Mutation p.D715N 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-DX-AB2E-01 8 107782101 107782101 C T ABRA Silent p.K106K 0.39 TCGA-DX-AB2E-01 8 110445410 110445410 T C PKHD1L1 Missense_Mutation p.V1102A 0.30 deleterious(0.03) benign(0.345) TCGA-DX-AB2E-01 8 110453571 110453571 G A PKHD1L1 Silent p.G1389G 0.29 TCGA-DX-AB2E-01 8 113841985 113841985 C T CSMD3 Missense_Mutation p.E597K 0.30 deleterious(0.01) benign(0.12) TCGA-DX-AB2E-01 8 114186119 114186119 G A CSMD3 Missense_Mutation p.P181S 0.23 deleterious(0) benign(0.158) TCGA-DX-AB2E-01 8 118811864 118811864 C T EXT1 3'UTR 0.16 TCGA-DX-AB2E-01 8 120598528 120598528 T - ENPP2 Frame_Shift_Del p.K474Sfs*4 0.19 TCGA-DX-AB2E-01 8 120629450 120629450 G A ENPP2 Missense_Mutation p.P204L 0.31 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 8 122629392 122629392 C T HAS2 Missense_Mutation p.V228I 0.20 tolerated(0.35) benign(0.047) TCGA-DX-AB2E-01 8 124359475 124359475 G A ATAD2 Missense_Mutation p.S690F 0.47 deleterious(0) possibly_damaging(0.678) TCGA-DX-AB2E-01 8 125132008 125132008 C G FER1L6 Missense_Mutation p.R1851G 0.11 deleterious(0.01) benign(0.079) TCGA-DX-AB2E-01 8 131955685 131955685 C T ADCY8 Missense_Mutation p.G422E 0.27 deleterious(0) probably_damaging(0.995) TCGA-DX-AB2E-01 8 139144583 139144583 C T FAM135B 3'UTR 0.30 TCGA-DX-AB2E-01 8 141813714 141813714 G A PTK2 Silent p.T301T 0.27 TCGA-DX-AB2E-01 8 144808130 144808130 G A FAM83H Silent p.F1167F 0.29 TCGA-DX-AB2E-01 8 17409438 17409438 G A SLC7A2 Missense_Mutation p.G373E 0.55 deleterious(0.01) probably_damaging(0.976) TCGA-DX-AB2E-01 8 25701659 25701659 C T EBF2 3'UTR 0.47 TCGA-DX-AB2E-01 8 25747297 25747297 C T EBF2 Missense_Mutation p.R241Q 0.56 deleterious(0.01) benign(0.028) TCGA-DX-AB2E-01 8 28600611 28600611 C T EXTL3 Silent p.A810A 0.56 TCGA-DX-AB2E-01 8 3087730 3087730 C T CSMD1 Missense_Mutation p.D1393N 0.56 probably_damaging(0.964) TCGA-DX-AB2E-01 8 35544127 35544127 G A UNC5D Silent p.R328R 0.51 TCGA-DX-AB2E-01 8 37821229 37821229 C T ADRB3 3'UTR 0.53 TCGA-DX-AB2E-01 8 39873083 39873083 G A IDO2 Missense_Mutation p.D409N 0.36 tolerated(0.31) benign(0.073) TCGA-DX-AB2E-01 8 48973359 48973359 C T UBE2V2 Missense_Mutation p.P137S 0.37 deleterious(0) probably_damaging(0.971) TCGA-DX-AB2E-01 8 52359645 52359645 C T PXDNL Missense_Mutation p.D482N 0.65 tolerated(0.08) possibly_damaging(0.721) TCGA-DX-AB2E-01 8 56438646 56438646 T C XKR4 3'UTR 0.21 TCGA-DX-AB2E-01 8 62559369 62559369 G A ASPH Missense_Mutation p.L187F 0.28 tolerated_low_confidence(0.84) benign(0.042) TCGA-DX-AB2E-01 8 68658460 68658460 G A CPA6 5'UTR 0.28 TCGA-DX-AB2E-01 8 73848263 73848263 G A KCNB2 Missense_Mutation p.G225R 0.32 deleterious(0) possibly_damaging(0.761) TCGA-DX-AB2E-01 8 75227588 75227588 G A JPH1 Missense_Mutation p.S216F 0.46 deleterious(0) probably_damaging(0.993) TCGA-DX-AB2E-01 8 77763442 77763442 C T ZFHX4 Missense_Mutation p.L1429F 0.36 possibly_damaging(0.765) TCGA-DX-AB2E-01 8 79610654 79610654 C T ZC2HC1A Missense_Mutation p.P204S 0.22 tolerated(0.24) benign(0.021) TCGA-DX-AB2E-01 8 87487100 87487100 G A RMDN1 Silent p.F281F 0.42 TCGA-DX-AB2E-01 8 88885861 88885861 C T DCAF4L2 Silent p.R113R 0.28 TCGA-DX-AB2E-01 8 89052978 89052978 G A MMP16 3'UTR 0.33 TCGA-DX-AB2E-01 8 91637034 91637034 G A TMEM64 3'UTR 0.32 TCGA-DX-AB2E-01 8 95840008 95840008 C T INTS8 Missense_Mutation p.P169S 0.25 tolerated(0.53) benign(0.167) TCGA-DX-AB2E-01 8 97154995 97154995 T A GDF6 3'UTR 0.28 TCGA-DX-AB2E-01 8 99102153 99102153 G A C8orf47 Missense_Mutation p.G303E 0.48 tolerated(0.18) probably_damaging(0.988) TCGA-DX-AB2E-01 9 104087342 104087342 C T LPPR1 3'UTR 0.60 TCGA-DX-AB2E-01 9 104356751 104356751 C T PPP3R2 Silent p.E154E 0.64 TCGA-DX-AB2E-01 9 105767566 105767566 A G CYLC2 Missense_Mutation p.K218R 0.52 deleterious(0.01) unknown(0) TCGA-DX-AB2E-01 9 114182297 114182297 G A KIAA0368 Missense_Mutation p.P698L 0.56 tolerated(0.17) benign(0.114) TCGA-DX-AB2E-01 9 114804167 114804167 G A SUSD1 Silent p.F741F 0.73 TCGA-DX-AB2E-01 9 117168795 117168795 G A DFNB31 Silent p.P692P 0.81 TCGA-DX-AB2E-01 9 117168927 117168927 G A DFNB31 Silent p.S648S 0.75 TCGA-DX-AB2E-01 9 118997664 118997664 C T PAPPA Missense_Mutation p.S827F 0.72 deleterious(0.04) possibly_damaging(0.485) TCGA-DX-AB2E-01 9 123165309 123165309 G A CDK5RAP2 Silent p.S1694S 0.62 TCGA-DX-AB2E-01 9 125048163 125048163 C T MRRF Intron 0.63 TCGA-DX-AB2E-01 9 131909841 131909841 C T PPP2R4 3'UTR 0.79 TCGA-DX-AB2E-01 9 133779526 133779526 C T FIBCD1 Nonsense_Mutation p.W437* 0.73 TCGA-DX-AB2E-01 9 134371388 134371388 C T PRRC2B 3'UTR 0.69 TCGA-DX-AB2E-01 9 136198702 136198702 G A SURF6 3'UTR 0.65 TCGA-DX-AB2E-01 9 137779172 137779172 G A FCN2 Missense_Mutation p.G285S 0.65 tolerated(0.44) benign(0.006) TCGA-DX-AB2E-01 9 139658890 139658892 CGT AG LCN15 Frame_Shift_Del p.T17Lfs*75 0.34 TCGA-DX-AB2E-01 9 139699987 139699987 C A CCDC183 Intron 1.00 TCGA-DX-AB2E-01 9 139758280 139758280 G A EDF1 Missense_Mutation p.S41F 0.61 deleterious(0.02) possibly_damaging(0.722) TCGA-DX-AB2E-01 9 18680328 18680328 G A ADAMTSL1 Nonsense_Mutation p.W385* 0.53 TCGA-DX-AB2E-01 9 27949180 27949180 G A LINGO2 Missense_Mutation p.S497F 0.36 tolerated(0.27) possibly_damaging(0.845) TCGA-DX-AB2E-01 9 28372834 28372834 C T LINGO2 Intron 0.32 TCGA-DX-AB2E-01 9 32541150 32541150 A G TOPORS 3'UTR 0.21 TCGA-DX-AB2E-01 9 32632221 32632221 C T TAF1L Missense_Mutation p.M1119I 0.24 tolerated(0.06) benign(0.14) TCGA-DX-AB2E-01 9 32634722 32634722 G A TAF1L Missense_Mutation p.R286C 0.26 tolerated(0.05) possibly_damaging(0.88) TCGA-DX-AB2E-01 9 32634836 32634836 C T TAF1L Missense_Mutation p.E248K 0.44 tolerated(0.15) benign(0.21) TCGA-DX-AB2E-01 9 33548696 33548696 A C ANKRD18B Missense_Mutation p.E575A 0.51 deleterious(0.01) possibly_damaging(0.532) TCGA-DX-AB2E-01 9 33917919 33917919 A T UBE2R2 3'UTR 0.25 TCGA-DX-AB2E-01 9 35107786 35107786 G A FAM214B Silent p.S162S 0.55 TCGA-DX-AB2E-01 9 35650022 35650022 C T SIT1 Silent p.R138R 0.21 TCGA-DX-AB2E-01 9 35680961 35680961 G A CA9 Splice_Site p.X440_splice 0.10 TCGA-DX-AB2E-01 9 35749252 35749252 G A RGP1 5'Flank 0.65 TCGA-DX-AB2E-01 9 36338717 36338717 C T RNF38 3'UTR 0.16 TCGA-DX-AB2E-01 9 38577922 38577922 G A ANKRD18A Missense_Mutation p.S824L 0.34 tolerated(0.21) possibly_damaging(0.885) TCGA-DX-AB2E-01 9 72658950 72658950 C T MAMDC2 5'UTR 0.50 TCGA-DX-AB2E-01 9 72659550 72659550 G A MAMDC2 Missense_Mutation p.E29K 0.62 deleterious(0.01) probably_damaging(0.997) TCGA-DX-AB2E-01 9 73376619 73376619 C T TRPM3 Silent p.R390R 0.72 TCGA-DX-AB2E-01 9 8404648 8404648 C T PTPRD Missense_Mutation p.G1367S 0.43 deleterious(0.05) probably_damaging(0.994) TCGA-DX-AB2E-01 9 85597673 85597673 C T RASEF Silent p.K714K 0.54 TCGA-DX-AB2E-01 9 90535838 90535838 C T SPATA31C1 RNA 0.59 TCGA-DX-AB2E-01 9 95480170 95480170 T - BICD2 Frame_Shift_Del p.T723Pfs*4 0.40 TCGA-DX-AB2E-01 X 100507640 100507640 T C DRP2 Missense_Mutation p.F638L 0.61 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2E-01 X 105451769 105451769 C T MUM1L1 3'UTR 0.71 TCGA-DX-AB2E-01 X 105451938 105451938 C T MUM1L1 3'UTR 0.61 TCGA-DX-AB2E-01 X 111699851 111699851 C T ZCCHC16 3'UTR 0.73 TCGA-DX-AB2E-01 X 112024203 112024203 C G AMOT Missense_Mutation p.G795A 0.14 unknown(0) TCGA-DX-AB2E-01 X 114144002 114144002 C T HTR2C 3'UTR 0.62 TCGA-DX-AB2E-01 X 114144594 114144594 C T HTR2C 3'UTR 0.62 TCGA-DX-AB2E-01 X 114427256 114427256 G A RBMXL3 3'UTR 0.66 TCGA-DX-AB2E-01 X 117079473 117079473 G A KLHL13 Missense_Mutation p.S58L 0.76 deleterious(0.01) benign(0.108) TCGA-DX-AB2E-01 X 123526042 123526042 T C TENM1 Missense_Mutation p.I1850V 0.51 tolerated(1) benign(0.01) TCGA-DX-AB2E-01 X 130215689 130215689 G A ARHGAP36 Missense_Mutation p.R17K 0.69 tolerated_low_confidence(0.25) benign(0) TCGA-DX-AB2E-01 X 130222876 130222876 C T ARHGAP36 3'UTR 0.56 TCGA-DX-AB2E-01 X 131762776 131762776 G A HS6ST2 Silent p.F471F 0.61 TCGA-DX-AB2E-01 X 135430742 135430742 C T GPR112 Missense_Mutation p.S1626F 0.55 deleterious(0) probably_damaging(0.936) TCGA-DX-AB2E-01 X 13624542 13624542 C T EGFL6 Nonsense_Mutation p.R189* 0.70 TCGA-DX-AB2E-01 X 139038581 139038581 C T CXorf66 Missense_Mutation p.S187N 0.72 tolerated(0.79) benign(0.059) TCGA-DX-AB2E-01 X 140785772 140785772 C T SPANXD Silent p.S48S 0.63 TCGA-DX-AB2E-01 X 140967031 140967031 G A MAGEC3 Missense_Mutation p.G110E 0.71 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-DX-AB2E-01 X 140993291 140993291 C T MAGEC1 Missense_Mutation p.P34L 0.80 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-DX-AB2E-01 X 140994314 140994314 T C MAGEC1 Missense_Mutation p.I375T 0.66 deleterious_low_confidence(0) benign(0.152) TCGA-DX-AB2E-01 X 140996004 140996004 C T MAGEC1 Silent p.V938V 0.72 TCGA-DX-AB2E-01 X 142803763 142803763 G A SPANXN2 5'UTR 0.72 TCGA-DX-AB2E-01 X 148631091 148631091 C T CXorf40A 3'Flank 0.69 TCGA-DX-AB2E-01 X 1505534 1505534 G A SLC25A6 Silent p.F286F 0.47 TCGA-DX-AB2E-01 X 151128158 151128158 C T GABRE Intron 0.86 TCGA-DX-AB2E-01 X 151935216 151935216 T G MAGEA3 3'UTR 0.26 TCGA-DX-AB2E-01 X 155006532 155006532 C T SPRY3 3'UTR 0.50 TCGA-DX-AB2E-01 X 19017310 19017310 A T GPR64 Silent p.I806I 0.68 TCGA-DX-AB2E-01 X 21627715 21627715 G A CNKSR2 Missense_Mutation p.G891E 0.73 tolerated(0.73) benign(0) TCGA-DX-AB2E-01 X 2209608 2209608 G A DHRSX Missense_Mutation p.S108F 0.48 deleterious(0) probably_damaging(1) TCGA-DX-AB2E-01 X 30848362 30848362 C T TAB3 3'UTR 0.65 TCGA-DX-AB2E-01 X 3241341 3241341 G A MXRA5 Silent p.L795L 0.65 TCGA-DX-AB2E-01 X 37027774 37027774 C T FAM47C Missense_Mutation p.P431S 0.68 tolerated_low_confidence(0.1) probably_damaging(0.998) TCGA-DX-AB2E-01 X 41206162 41206162 T A DDX3X Missense_Mutation p.L556M 0.69 tolerated(0.06) probably_damaging(0.987) TCGA-DX-AB2E-01 X 41206163 41206163 T A DDX3X Nonsense_Mutation p.L556* 0.67 TCGA-DX-AB2E-01 X 47705688 47705688 C T ZNF81 Missense_Mutation p.P8S 0.88 tolerated(0.16) benign(0.011) TCGA-DX-AB2E-01 X 47918037 47918037 G A ZNF630 Silent p.T598T 0.47 TCGA-DX-AB2E-01 X 48117237 48117237 C T SSX1 Silent p.Y42Y 0.76 TCGA-DX-AB2E-01 X 48853687 48853687 C T GRIPAP1 Missense_Mutation p.S94N 0.09 possibly_damaging(0.798) TCGA-DX-AB2E-01 X 49957156 49957156 G A AKAP4 Silent p.F736F 0.83 TCGA-DX-AB2E-01 X 53222217 53222217 G A KDM5C Missense_Mutation p.P1539S 0.87 tolerated_low_confidence(1) benign(0) TCGA-DX-AB2E-01 X 5810947 5810947 C T NLGN4X Missense_Mutation p.G788R 0.75 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DX-AB2E-01 X 72434398 72434398 G A NAP1L2 5'UTR 0.80 TCGA-DX-AB2E-01 X 73046088 73046088 C T XIST RNA 0.77 TCGA-DX-AB2E-01 X 73063933 73063933 G A XIST RNA 0.81 TCGA-DX-AB2E-01 X 73744247 73744247 C T SLC16A2 Missense_Mutation p.S210F 0.64 deleterious(0.02) benign(0.359) TCGA-DX-AB2E-01 X 73953330 73953330 G A KIAA2022 3'UTR 0.66 TCGA-DX-AB2E-01 X 78216519 78216519 C T P2RY10 Missense_Mutation p.P168S 0.68 deleterious(0.03) possibly_damaging(0.628) TCGA-DX-AB2E-01 X 89177805 89177805 C T TGIF2LX Missense_Mutation p.P241S 0.56 deleterious(0) probably_damaging(0.968) TCGA-DX-AB2E-01 X 90689889 90689889 A T PABPC5 5'UTR 0.15 TCGA-DX-AB2E-01 X 90692442 90692442 C T PABPC5 3'UTR 0.78 TCGA-DX-AB2F-01 11 123813912 123813912 C A OR6T1 Missense_Mutation p.A212S 0.84 tolerated(0.6) benign(0.026) TCGA-DX-AB2F-01 11 5013310 5013310 T C MMP26 Missense_Mutation p.F238L 0.21 deleterious(0) probably_damaging(0.974) TCGA-DX-AB2F-01 11 67288529 67288529 C T CABP2 Missense_Mutation p.E116K 0.48 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2F-01 11 74046997 74046997 G T PGM2L1 3'UTR 0.44 TCGA-DX-AB2F-01 11 8285238 8285238 G T LMO1 5'UTR 0.15 TCGA-DX-AB2F-01 12 55422536 55422536 G A NEUROD4 3'UTR 0.29 TCGA-DX-AB2F-01 12 57628071 57628071 G A SHMT2 Missense_Mutation p.R481H 0.04 deleterious(0.02) benign(0) TCGA-DX-AB2F-01 12 57992946 57992946 C A PIP4K2C Silent p.R204R 0.03 TCGA-DX-AB2F-01 12 76440760 76440760 T C NAP1L1 3'UTR 0.07 TCGA-DX-AB2F-01 14 104177437 104177437 C T XRCC3 5'UTR 0.09 TCGA-DX-AB2F-01 14 23853824 23853824 G A MYH6 Missense_Mutation p.R1798W 0.37 deleterious(0) probably_damaging(1) TCGA-DX-AB2F-01 14 35742773 35742773 A G KIAA0391 3'UTR 0.22 TCGA-DX-AB2F-01 14 61180804 61180804 G A SIX4 Missense_Mutation p.T556M 0.29 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2F-01 15 65621811 65621811 C A IGDCC3 Missense_Mutation p.D708Y 0.39 deleterious_low_confidence(0.01) benign(0.332) TCGA-DX-AB2F-01 16 21702929 21702929 C T OTOA Silent p.Y220Y 0.49 TCGA-DX-AB2F-01 16 2329036 2329036 G A ABCA3 Silent p.G1485G 0.35 TCGA-DX-AB2F-01 16 57989129 57989129 C T CNGB1 Intron 0.23 TCGA-DX-AB2F-01 16 84444193 84444193 C T ATP2C2 Missense_Mutation p.T146I 0.21 deleterious(0) possibly_damaging(0.868) TCGA-DX-AB2F-01 16 8988658 8988658 C T USP7 Missense_Mutation p.E1032K 0.15 deleterious(0.01) benign(0.365) TCGA-DX-AB2F-01 17 15878693 15878693 C A ADORA2B 3'UTR 0.25 TCGA-DX-AB2F-01 17 6441389 6441389 C T PITPNM3 Silent p.P12P 0.12 TCGA-DX-AB2F-01 19 34819042 34819042 C G KIAA0355 Missense_Mutation p.L364V 0.15 tolerated(0.06) probably_damaging(0.953) TCGA-DX-AB2F-01 19 47225504 47225504 C A STRN4 Missense_Mutation p.R674L 0.07 tolerated(0.07) probably_damaging(0.994) TCGA-DX-AB2F-01 19 51381924 51381924 G A KLK2 3'UTR 0.12 TCGA-DX-AB2F-01 19 57301291 57301291 T - ZIM2 Frame_Shift_Del p.E143Kfs*8 0.15 TCGA-DX-AB2F-01 1 149783896 149783896 G A HIST2H2BF 5'UTR 0.05 TCGA-DX-AB2F-01 1 159170734 159170734 G A CADM3 3'UTR 0.34 TCGA-DX-AB2F-01 1 21167469 21167469 A G EIF4G3 Missense_Mutation p.F1264S 0.37 deleterious(0) probably_damaging(1) TCGA-DX-AB2F-01 1 35228522 35228522 C T GJB4 3'UTR 0.17 TCGA-DX-AB2F-01 21 19732162 19732162 G A TMPRSS15 Silent p.S264S 0.33 TCGA-DX-AB2F-01 21 46935022 46935022 A G SLC19A1 3'UTR 0.27 TCGA-DX-AB2F-01 2 130898852 130898852 G C CCDC74B Missense_Mutation p.P188A 0.35 deleterious(0.04) possibly_damaging(0.701) TCGA-DX-AB2F-01 2 153475423 153475423 G A FMNL2 Missense_Mutation p.E460K 0.16 benign(0.054) TCGA-DX-AB2F-01 2 153475615 153475615 G A FMNL2 Missense_Mutation p.G524R 0.12 possibly_damaging(0.702) TCGA-DX-AB2F-01 2 153475623 153475623 G A FMNL2 Silent p.L526L 0.13 TCGA-DX-AB2F-01 2 153476135 153476135 G A FMNL2 Silent p.E580E 0.17 TCGA-DX-AB2F-01 2 153476190 153476190 G A FMNL2 Missense_Mutation p.G599R 0.11 probably_damaging(0.979) TCGA-DX-AB2F-01 2 153476191 153476191 G A FMNL2 Missense_Mutation p.G599E 0.13 probably_damaging(0.969) TCGA-DX-AB2F-01 2 204738647 204738647 T C CTLA4 3'UTR 0.42 TCGA-DX-AB2F-01 3 121822505 121822505 G C CD86 Missense_Mutation p.G71R 0.30 deleterious(0) probably_damaging(1) TCGA-DX-AB2F-01 4 153875437 153875437 G A FHDC1 Missense_Mutation p.R210Q 0.88 tolerated(0.07) possibly_damaging(0.658) TCGA-DX-AB2F-01 4 75974155 75974156 AC - PARM1 3'UTR 0.14 TCGA-DX-AB2F-01 5 140175917 140175917 A G PCDHA2 Silent p.A456A 0.57 TCGA-DX-AB2F-01 5 140214891 140214891 T A PCDHA7 Missense_Mutation p.M308K 0.22 deleterious_low_confidence(0) benign(0.099) TCGA-DX-AB2F-01 5 36035888 36035888 A T UGT3A2 Missense_Mutation p.L495H 0.38 deleterious(0.04) probably_damaging(0.967) TCGA-DX-AB2F-01 6 7882282 7882282 G C TXNDC5 3'UTR 0.12 TCGA-DX-AB2F-01 7 124493077 124493077 C T POT1 Missense_Mutation p.R273Q 0.16 deleterious(0) probably_damaging(0.985) TCGA-DX-AB2F-01 7 136700328 136700328 G A CHRM2 Missense_Mutation p.R239K 0.24 tolerated(0.91) benign(0.002) TCGA-DX-AB2F-01 8 102570802 102570802 C T GRHL2 Missense_Mutation p.S147F 0.53 tolerated(0.06) benign(0.13) TCGA-DX-AB2F-01 9 139360765 139360765 G - SEC16A Frame_Shift_Del p.A1360Dfs*104 0.28 TCGA-DX-AB2F-01 X 115582662 115582662 G A SLC6A14 Missense_Mutation p.G329D 0.08 deleterious(0) possibly_damaging(0.651) TCGA-DX-AB2F-01 X 37026524 37026524 G T FAM47C Missense_Mutation p.G14V 0.17 deleterious(0) probably_damaging(0.992) TCGA-DX-AB2F-01 X 47842772 47842772 G T ZNF182 Missense_Mutation p.Q38K 0.28 tolerated(0.22) benign(0.004) TCGA-DX-AB2F-01 X 54319436 54319436 A T WNK3 Missense_Mutation p.I641N 0.15 tolerated(0.21) benign(0.002) TCGA-DX-AB2F-01 X 79989633 79989633 T G BRWD3 Missense_Mutation p.E357A 0.24 deleterious(0) possibly_damaging(0.676) TCGA-DX-AB2G-01 10 126715438 126715438 C A CTBP2 Silent p.L297L 0.43 TCGA-DX-AB2G-01 10 134660723 134660723 C T TTC40 Missense_Mutation p.E2019K 0.30 tolerated(0.21) benign(0.019) TCGA-DX-AB2G-01 10 24832973 24832973 G A KIAA1217 Missense_Mutation p.G1592R 0.36 deleterious(0) probably_damaging(1) TCGA-DX-AB2G-01 10 3824222 3824223 - A KLF6 Frame_Shift_Ins p.C96Lfs*19 0.34 TCGA-DX-AB2G-01 11 2398732 2398732 G T CD81 5'UTR 0.12 TCGA-DX-AB2G-01 11 55944659 55944659 G A OR5J2 Missense_Mutation p.C189Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2G-01 11 56230127 56230127 C G OR5M9 Missense_Mutation p.G251R 0.05 deleterious(0) benign(0.429) TCGA-DX-AB2G-01 12 119594485 119594485 G A SRRM4 Missense_Mutation p.R573H 0.46 deleterious_low_confidence(0) unknown(0) TCGA-DX-AB2G-01 12 57589140 57589140 G C LRP1 Missense_Mutation p.D2799H 0.02 probably_damaging(0.933) TCGA-DX-AB2G-01 12 57589458 57589458 G A LRP1 Missense_Mutation p.D2819N 0.03 benign(0.253) TCGA-DX-AB2G-01 12 58021954 58021954 G A B4GALNT1 Missense_Mutation p.T365M 0.05 deleterious(0) probably_damaging(1) TCGA-DX-AB2G-01 12 69742137 69742137 T C LYZ 5'UTR 0.09 TCGA-DX-AB2G-01 12 70070807 70070807 C A BEST3 Silent p.L252L 0.54 TCGA-DX-AB2G-01 14 100705524 100705524 G T YY1 5'UTR 0.20 TCGA-DX-AB2G-01 14 24911572 24911572 C T SDR39U1 Missense_Mutation p.G35R 0.28 deleterious(0.03) benign(0.063) TCGA-DX-AB2G-01 14 69791508 69791508 G T GALNT16 Splice_Site p.X145_splice 0.12 TCGA-DX-AB2G-01 15 67835785 67835785 C T MAP2K5 Nonsense_Mutation p.Q38* 0.07 TCGA-DX-AB2G-01 15 78500436 78500436 G A ACSBG1 Missense_Mutation p.T47I 0.41 deleterious_low_confidence(0.05) benign(0.009) TCGA-DX-AB2G-01 16 10273944 10273944 C T GRIN2A Missense_Mutation p.V109I 0.34 tolerated(0.83) benign(0.009) TCGA-DX-AB2G-01 16 24192129 24192129 C T PRKCB Silent p.N471N 0.31 TCGA-DX-AB2G-01 17 11725755 11725755 G T DNAH9 Missense_Mutation p.V2951L 0.38 benign(0.162) TCGA-DX-AB2G-01 17 56348017 56348017 C A MPO Nonstop_Mutation p.*746Yext*9 0.38 TCGA-DX-AB2G-01 17 79894727 79894727 T C PYCR1 5'UTR 0.34 TCGA-DX-AB2G-01 18 43432446 43432446 C G EPG5 Missense_Mutation p.D2576H 0.23 tolerated_low_confidence(0.15) probably_damaging(0.996) TCGA-DX-AB2G-01 19 57336013 57336013 G A PEG3 Missense_Mutation p.P4L 0.22 tolerated(0.17) benign(0.444) TCGA-DX-AB2G-01 1 11595642 11595642 G A PTCHD2 Missense_Mutation p.V1253I 0.35 tolerated(0.09) benign(0.052) TCGA-DX-AB2G-01 1 152057988 152057988 G T TCHHL1 Missense_Mutation p.L724I 0.45 tolerated(0.18) benign(0.087) TCGA-DX-AB2G-01 1 155176138 155176138 G A THBS3 Missense_Mutation p.R47W 0.38 tolerated(0.07) possibly_damaging(0.676) TCGA-DX-AB2G-01 1 167097263 167097263 G T DUSP27 Silent p.S965S 0.32 TCGA-DX-AB2G-01 1 169586354 169586354 G A SELP Silent p.C131C 0.32 TCGA-DX-AB2G-01 20 30432800 30432800 A G FOXS1 Silent p.T182T 0.24 TCGA-DX-AB2G-01 22 22869108 22869108 G C ZNF280A Missense_Mutation p.Q283E 0.24 tolerated(0.08) benign(0.134) TCGA-DX-AB2G-01 3 129147457 129147457 T C EFCAB12 5'UTR 0.15 TCGA-DX-AB2G-01 4 153897251 153897251 T C FHDC1 Silent p.D936D 0.28 TCGA-DX-AB2G-01 5 175955813 175955813 C T RNF44 3'UTR 0.05 TCGA-DX-AB2G-01 5 41015559 41015559 C T MROH2B Missense_Mutation p.R969K 0.36 tolerated(0.46) benign(0.001) TCGA-DX-AB2G-01 5 45695937 45695937 G A HCN1 Missense_Mutation p.P87S 0.31 tolerated(0.78) benign(0.018) TCGA-DX-AB2G-01 5 95236750 95236750 G A ELL2 Missense_Mutation p.T259I 0.44 deleterious(0) probably_damaging(0.993) TCGA-DX-AB2G-01 6 153292351 153292351 T C FBXO5 Missense_Mutation p.I431V 0.10 tolerated(0.73) benign(0.001) TCGA-DX-AB2G-01 6 46135870 46135870 A G ENPP5 Missense_Mutation p.Y44H 0.03 tolerated(0.55) possibly_damaging(0.766) TCGA-DX-AB2G-01 8 119123578 119123578 G T EXT1 5'UTR 0.20 TCGA-DX-AB2G-01 8 12879396 12879396 T C KIAA1456 Missense_Mutation p.L403S 0.36 tolerated(0.83) benign(0.008) TCGA-DX-AB2G-01 8 133090154 133090154 C T HHLA1 Silent p.S366S 0.34 TCGA-DX-AB2G-01 9 5774107 5774107 G - KIAA1432 Frame_Shift_Del p.G1379Afs*58 0.34 TCGA-DX-AB2G-01 X 101970023 101970023 A T GPRASP2 Missense_Mutation p.T76S 0.69 tolerated(0.34) benign(0.007) TCGA-DX-AB2H-01 10 115608781 115608796 CTCCTACATTAGATGA - DCLRE1A Frame_Shift_Del p.S690Dfs*60 0.27 TCGA-DX-AB2H-01 10 76865463 76865463 C T DUSP13 Intron 0.49 TCGA-DX-AB2H-01 11 103025517 103025517 A G DYNC2H1 Silent p.Q1184Q 0.46 TCGA-DX-AB2H-01 11 103908420 103908420 T C DDI1 Silent p.A290A 0.40 TCGA-DX-AB2H-01 11 14891166 14891166 A C PDE3B Missense_Mutation p.D1100A 0.54 deleterious(0) unknown(0) TCGA-DX-AB2H-01 11 46694038 46694038 C G ATG13 3'UTR 0.45 TCGA-DX-AB2H-01 11 47236754 47236754 A G DDB2 Missense_Mutation p.R23G 0.46 deleterious_low_confidence(0.01) benign(0.219) TCGA-DX-AB2H-01 12 10772806 10772806 T G STYK1 Missense_Mutation p.E402D 0.94 tolerated(0.06) benign(0.025) TCGA-DX-AB2H-01 12 39727019 39727019 C T KIF21A Missense_Mutation p.E828K 0.47 tolerated(0.05) possibly_damaging(0.867) TCGA-DX-AB2H-01 12 46244071 46244071 C T ARID2 Missense_Mutation p.S722F 0.04 deleterious_low_confidence(0) possibly_damaging(0.698) TCGA-DX-AB2H-01 12 54105691 54105691 C T CALCOCO1 3'UTR 0.13 TCGA-DX-AB2H-01 12 56522183 56522184 CC G ESYT1 Frame_Shift_Del p.P27Rfs*29 0.40 TCGA-DX-AB2H-01 12 68642513 68642513 G A IL22 3'UTR 0.18 TCGA-DX-AB2H-01 12 85409741 85409741 T A TSPAN19 Missense_Mutation p.N202Y 0.23 deleterious(0.02) possibly_damaging(0.535) TCGA-DX-AB2H-01 13 37580294 37580294 A - EXOSC8 Frame_Shift_Del p.K130Sfs*28 0.29 TCGA-DX-AB2H-01 14 70713492 70713492 G T ADAM21P1 RNA 0.36 TCGA-DX-AB2H-01 15 66784398 66784398 A - MAP2K1 3'UTR 0.31 TCGA-DX-AB2H-01 15 85327731 85327731 C T ZNF592 Missense_Mutation p.R609W 0.42 deleterious(0) probably_damaging(1) TCGA-DX-AB2H-01 16 23200982 23200982 G T SCNN1G Missense_Mutation p.G203V 0.48 deleterious(0) probably_damaging(0.973) TCGA-DX-AB2H-01 17 40761737 40761737 C A TUBG1 5'UTR 0.45 TCGA-DX-AB2H-01 18 52604167 52604167 C T CCDC68 Missense_Mutation p.G123E 0.44 deleterious(0) probably_damaging(1) TCGA-DX-AB2H-01 19 10089586 10089586 T C COL5A3 Missense_Mutation p.K982R 0.49 unknown(0) TCGA-DX-AB2H-01 19 4048115 4048115 G A ZBTB7A Missense_Mutation p.R464C 0.49 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2H-01 1 1327983 1327983 C T CCNL2 Intron 0.50 TCGA-DX-AB2H-01 1 150621063 150621063 G A GOLPH3L Nonsense_Mutation p.R198* 0.16 TCGA-DX-AB2H-01 1 202710561 202710561 C A KDM5B Missense_Mutation p.R960L 0.05 deleterious(0.02) benign(0.44) TCGA-DX-AB2H-01 1 28293381 28293381 C A XKR8 Silent p.I286I 0.51 TCGA-DX-AB2H-01 1 71870978 71870978 C A NEGR1 3'UTR 0.08 TCGA-DX-AB2H-01 1 90050305 90050305 A C LRRC8B Missense_Mutation p.Q699P 0.26 deleterious(0.01) benign(0.309) TCGA-DX-AB2H-01 22 17447244 17447244 G A GAB4 Missense_Mutation p.T345M 1.00 tolerated(0.06) benign(0.184) TCGA-DX-AB2H-01 2 107021588 107021588 G T RGPD3 3'UTR 0.45 TCGA-DX-AB2H-01 2 136437847 136437860 GCCTGTTTACTATA - R3HDM1 Frame_Shift_Del p.P770Cfs*85 0.40 TCGA-DX-AB2H-01 2 179427807 179427807 C T TTN Silent p.V27684V 0.62 TCGA-DX-AB2H-01 2 212243218 212243218 G T ERBB4 3'UTR 0.97 TCGA-DX-AB2H-01 2 228122337 228122337 G T COL4A3 Missense_Mutation p.G336C 0.90 probably_damaging(1) TCGA-DX-AB2H-01 2 25966165 25966165 G A ASXL2 Missense_Mutation p.P1014L 0.50 tolerated(0.78) benign(0.008) TCGA-DX-AB2H-01 2 99012444 99012444 C A CNGA3 Missense_Mutation p.P271T 0.46 deleterious(0.03) possibly_damaging(0.771) TCGA-DX-AB2H-01 3 112300122 112300122 G A SLC35A5 Silent p.R386R 0.42 TCGA-DX-AB2H-01 3 4853082 4853082 T - ITPR1 Frame_Shift_Del p.F2455Sfs*10 0.29 TCGA-DX-AB2H-01 3 62358026 62358026 T C FEZF2 Missense_Mutation p.N173S 0.34 deleterious(0) possibly_damaging(0.636) TCGA-DX-AB2H-01 4 144481091 144481091 C A SMARCA5 3'Flank 0.11 TCGA-DX-AB2H-01 4 175429244 175429244 G A HPGD Intron 0.90 TCGA-DX-AB2H-01 4 30725638 30725638 T C PCDH7 Missense_Mutation p.I865T 0.41 deleterious(0.05) probably_damaging(0.92) TCGA-DX-AB2H-01 4 39780493 39780493 T G UBE2K 3'UTR 0.42 TCGA-DX-AB2H-01 4 72332163 72332163 C T SLC4A4 Silent p.G500G 0.35 TCGA-DX-AB2H-01 4 74282068 74282068 T C ALB Silent p.N429N 0.22 TCGA-DX-AB2H-01 5 140208442 140208442 G C PCDHA6 Missense_Mutation p.D256H 0.44 deleterious_low_confidence(0.03) benign(0.027) TCGA-DX-AB2H-01 5 205573 205573 C T CCDC127 Missense_Mutation p.G208S 0.11 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2H-01 5 41195968 41195968 C G C6 Missense_Mutation p.R171S 0.46 deleterious(0) probably_damaging(0.92) TCGA-DX-AB2H-01 6 37186252 37186252 C A TMEM217 Silent p.S185S 0.55 TCGA-DX-AB2H-01 6 46135503 46135503 C G ENPP5 Missense_Mutation p.R166T 0.41 deleterious(0) probably_damaging(1) TCGA-DX-AB2H-01 7 24838637 24838645 GAATGATAT - OSBPL3 3'UTR 0.43 TCGA-DX-AB2H-01 7 8099753 8099753 C A GLCCI1 Missense_Mutation p.P281T 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-DX-AB2H-01 7 8099754 8099754 C A GLCCI1 Missense_Mutation p.P281Q 0.40 deleterious(0.04) probably_damaging(0.997) TCGA-DX-AB2H-01 7 92855678 92855678 T C HEPACAM2 Intron 0.38 TCGA-DX-AB2H-01 7 93055785 93055785 G A CALCR Silent p.G470G 0.47 TCGA-DX-AB2H-01 8 21977962 21977965 GCTT - HR Frame_Shift_Del p.E889Vfs*12 0.41 TCGA-DX-AB2H-01 9 132637674 132637674 G A USP20 Missense_Mutation p.V712M 0.50 deleterious(0) possibly_damaging(0.541) TCGA-DX-AB2H-01 9 140174330 140174330 C T TOR4A Nonsense_Mutation p.Q397* 0.27 TCGA-DX-AB2H-01 9 79891096 79891096 C A VPS13A Missense_Mutation p.A928D 0.44 deleterious(0) possibly_damaging(0.696) TCGA-DX-AB2H-01 X 134494115 134494115 C A ZNF449 Intron 0.39 TCGA-DX-AB2H-01 X 136113605 136113605 C A GPR101 Missense_Mutation p.D77Y 0.40 deleterious(0) probably_damaging(1) TCGA-DX-AB2H-01 X 140983153 140983153 G A MAGEC3 Silent p.R336R 0.50 TCGA-DX-AB2H-01 X 153006034 153006034 C T ABCD1 Silent p.Y547Y 0.10 TCGA-DX-AB2H-01 X 69397393 69397393 C G DGAT2L6 5'UTR 0.12 TCGA-DX-AB2J-01 10 34671595 34671595 G A PARD3 Silent p.S424S 0.07 TCGA-DX-AB2J-01 10 76791992 76791995 AAAC - KAT6B 3'UTR 0.41 TCGA-DX-AB2J-01 11 14891131 14891131 A T PDE3B Missense_Mutation p.K1088N 0.41 deleterious(0.01) probably_damaging(0.983) TCGA-DX-AB2J-01 11 22249114 22249114 C T ANO5 Silent p.S210S 0.07 TCGA-DX-AB2J-01 11 3041474 3041474 C T CARS Silent p.P414P 0.06 TCGA-DX-AB2J-01 12 112036785 112036785 C T ATXN2 Silent p.Q178Q 0.18 TCGA-DX-AB2J-01 12 112036800 112036800 C T ATXN2 Silent p.Q173Q 0.13 TCGA-DX-AB2J-01 12 112512476 112512477 - A NAA25 Intron 0.16 TCGA-DX-AB2J-01 12 31539184 31539184 A G DENND5B 3'UTR 0.26 TCGA-DX-AB2J-01 12 42632439 42632439 C T AC020629.1 3'Flank 0.22 TCGA-DX-AB2J-01 12 53647129 53647129 C G MFSD5 Silent p.T277T 0.19 TCGA-DX-AB2J-01 12 56993005 56993005 T G BAZ2A Silent p.A1772A 0.27 TCGA-DX-AB2J-01 12 7248882 7248882 A C C1RL 3'UTR 0.26 TCGA-DX-AB2J-01 14 22356497 22356497 A T TRAV12-2 Missense_Mutation p.Q52L 0.41 tolerated(0.09) benign(0.021) TCGA-DX-AB2J-01 15 67473711 67473711 C T SMAD3 Missense_Mutation p.S264F 0.41 deleterious(0.02) possibly_damaging(0.516) TCGA-DX-AB2J-01 16 3900553 3900553 A - CREBBP Frame_Shift_Del p.F181Lfs*17 0.37 TCGA-DX-AB2J-01 17 29859302 29859302 G C RAB11FIP4 3'UTR 0.61 TCGA-DX-AB2J-01 17 45973612 45973612 T G SP2 5'UTR 0.12 TCGA-DX-AB2J-01 19 22235314 22235314 C T ZNF257 5'UTR 0.08 TCGA-DX-AB2J-01 19 37383859 37383859 C T ZNF829 Intron 0.20 TCGA-DX-AB2J-01 19 41208580 41208580 C G ADCK4 Missense_Mutation p.S273T 0.44 tolerated(0.3) benign(0.381) TCGA-DX-AB2J-01 19 52031508 52031508 C T SIGLEC6 Splice_Site p.X338_splice 0.39 TCGA-DX-AB2J-01 19 55870230 55870230 C T FAM71E2 Missense_Mutation p.R669Q 0.41 tolerated(1) benign(0.01) TCGA-DX-AB2J-01 19 7622127 7622127 C T PNPLA6 Silent p.D1128D 0.48 TCGA-DX-AB2J-01 1 151376095 151376098 AAAT - POGZ 3'UTR 0.46 TCGA-DX-AB2J-01 1 156646392 156646392 C T NES Missense_Mutation p.R222H 0.36 deleterious(0.03) possibly_damaging(0.784) TCGA-DX-AB2J-01 1 24018316 24018331 GGCGGTGAGTAGCTGG - RPL11 Splice_Site p.X2_splice 0.37 TCGA-DX-AB2J-01 1 36643568 36643568 C A MAP7D1 Missense_Mutation p.P492T 0.42 probably_damaging(0.987) TCGA-DX-AB2J-01 21 35284619 35284619 C A AP000304.12 Missense_Mutation p.V7L 0.36 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-DX-AB2J-01 2 178085811 178085811 G A HNRNPA3 3'Flank 0.35 TCGA-DX-AB2J-01 2 198266834 198266834 T C SF3B1 Missense_Mutation p.K700E 0.39 deleterious(0) probably_damaging(0.96) TCGA-DX-AB2J-01 2 220435173 220435173 T C OBSL1 Missense_Mutation p.K261R 0.52 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2J-01 2 24985627 24985627 A C NCOA1 Silent p.T1379T 0.48 TCGA-DX-AB2J-01 2 27684174 27684174 T C IFT172 Missense_Mutation p.I802V 0.44 tolerated(0.71) benign(0.014) TCGA-DX-AB2J-01 2 279929 279929 A T FAM150B 3'UTR 0.11 TCGA-DX-AB2J-01 3 108361310 108361310 A G DZIP3 Missense_Mutation p.I364V 0.46 tolerated_low_confidence(0.75) benign(0.001) TCGA-DX-AB2J-01 3 128902646 128902646 G A CNBP 5'UTR 0.14 TCGA-DX-AB2J-01 3 51671237 51671237 G A RAD54L2 Missense_Mutation p.R467H 0.09 deleterious(0) probably_damaging(1) TCGA-DX-AB2J-01 4 144387374 144387374 G A GAB1 Missense_Mutation p.R671H 0.53 deleterious(0.03) probably_damaging(0.987) TCGA-DX-AB2J-01 4 90169766 90169766 G A GPRIN3 Missense_Mutation p.T499M 0.50 deleterious(0.01) possibly_damaging(0.812) TCGA-DX-AB2J-01 5 43535014 43535014 C G PAIP1 Missense_Mutation p.V380L 0.44 tolerated(0.06) possibly_damaging(0.601) TCGA-DX-AB2J-01 6 36936305 36936305 G A MTCH1 3'UTR 0.42 TCGA-DX-AB2J-01 6 36936306 36936306 C T MTCH1 3'UTR 0.43 TCGA-DX-AB2J-01 6 70637883 70637883 T C COL19A1 Missense_Mutation p.W117R 0.08 deleterious(0) unknown(0) TCGA-DX-AB2J-01 7 26224911 26224914 AGAT - NFE2L3 Frame_Shift_Del p.D532Efs*3 0.36 TCGA-DX-AB2J-01 7 54617804 54617804 C T VSTM2A Missense_Mutation p.T192M 0.57 tolerated(0.38) benign(0.002) TCGA-DX-AB2J-01 8 100711854 100711854 A G VPS13B Missense_Mutation p.S2075G 0.37 tolerated_low_confidence(0.47) benign(0) TCGA-DX-AB2J-01 8 134042071 134042071 G A TG Missense_Mutation p.G2348R 0.49 tolerated(0.21) benign(0.005) TCGA-DX-AB2J-01 8 141541670 141541670 A G AGO2 3'UTR 0.42 TCGA-DX-AB2J-01 8 7320316 7320316 C A SPAG11B Missense_Mutation p.A43S 0.16 tolerated(1) benign(0.025) TCGA-DX-AB2J-01 9 127642392 127642392 T G GOLGA1 3'UTR 0.33 TCGA-DX-AB2J-01 9 140036529 140036529 C T GRIN1 Missense_Mutation p.S108F 0.38 deleterious(0) probably_damaging(0.981) TCGA-DX-AB2J-01 X 119425116 119425116 G A TMEM255A Missense_Mutation p.A115V 0.39 deleterious(0.02) probably_damaging(0.999) TCGA-DX-AB2J-01 X 125686013 125686013 G T DCAF12L1 Missense_Mutation p.H193Q 0.48 deleterious(0) probably_damaging(1) TCGA-DX-AB2J-01 X 135047288 135047288 A T MMGT1 Silent p.G97G 0.41 TCGA-DX-AB2L-01 15 64977379 64977379 A T ZNF609 3'UTR 0.05 TCGA-DX-AB2L-01 16 4744085 4744085 G A NUDT16L1 Missense_Mutation p.G87D 0.22 deleterious(0) probably_damaging(1) TCGA-DX-AB2L-01 16 8875400 8875400 G T ABAT 3'UTR 0.21 TCGA-DX-AB2L-01 1 1717255 1717255 A T GNB1 3'UTR 0.17 TCGA-DX-AB2L-01 1 43852546 43852546 C A MED8 Missense_Mutation p.G132C 0.17 deleterious(0.03) possibly_damaging(0.849) TCGA-DX-AB2L-01 20 45228619 45228619 C T SLC13A3 Missense_Mutation p.S200N 0.14 tolerated(0.54) benign(0.005) TCGA-DX-AB2L-01 6 31750532 31750532 C G VARS Missense_Mutation p.R618P 0.17 deleterious(0) benign(0.196) TCGA-DX-AB2L-01 X 23685740 23685740 G A PRDX4 Missense_Mutation p.R18Q 0.22 tolerated_low_confidence(0.05) benign(0.046) TCGA-DX-AB2L-01 X 77302072 77302072 C T ATP7A 3'UTR 0.14 TCGA-DX-AB2O-01 10 102089001 102089001 C T PKD2L1 Missense_Mutation p.V106I 0.85 tolerated(0.62) benign(0.033) TCGA-DX-AB2O-01 10 14974887 14974887 C T DCLRE1C Missense_Mutation p.R249H 0.07 deleterious(0.02) benign(0.427) TCGA-DX-AB2O-01 10 5149811 5149811 C G AKR1C3 3'UTR 0.21 TCGA-DX-AB2O-01 10 5979192 5979192 G A FBXO18 Silent p.V1078V 0.20 TCGA-DX-AB2O-01 11 132206309 132206309 G A NTM 3'Flank 0.44 TCGA-DX-AB2O-01 11 31811516 31811516 G C PAX6 Missense_Mutation p.P426R 0.07 deleterious(0.03) possibly_damaging(0.475) TCGA-DX-AB2O-01 11 71146576 71146576 C A DHCR7 Missense_Mutation p.G425C 0.44 deleterious(0.01) probably_damaging(0.937) TCGA-DX-AB2O-01 11 8476292 8476292 T G STK33 Missense_Mutation p.K262T 0.40 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2O-01 12 101776945 101776945 G T UTP20 Missense_Mutation p.A2595S 0.15 tolerated(0.62) benign(0.034) TCGA-DX-AB2O-01 12 122257461 122257461 G A SETD1B Silent p.E1147E 0.07 TCGA-DX-AB2O-01 12 129181946 129181946 C T TMEM132C Missense_Mutation p.R703W 0.27 deleterious(0) possibly_damaging(0.827) TCGA-DX-AB2O-01 12 76747084 76747084 T G OSBPL8 3'UTR 0.22 TCGA-DX-AB2O-01 12 77244973 77244973 T C ZDHHC17 3'UTR 0.29 TCGA-DX-AB2O-01 12 8329703 8329703 C T ZNF705A Missense_Mutation p.P143S 0.10 tolerated(0.37) benign(0.011) TCGA-DX-AB2O-01 12 89818973 89818973 C G POC1B Missense_Mutation p.E433Q 0.44 tolerated(0.3) possibly_damaging(0.765) TCGA-DX-AB2O-01 12 89819150 89819150 C T POC1B Missense_Mutation p.E374K 0.44 tolerated(0.6) benign(0.034) TCGA-DX-AB2O-01 14 105476523 105476523 G A CDCA4 3'UTR 0.12 TCGA-DX-AB2O-01 14 106436914 106436914 G C ADAM6 RNA 0.10 TCGA-DX-AB2O-01 14 23900812 23900812 G A MYH7 Silent p.N238N 0.39 TCGA-DX-AB2O-01 14 24532356 24532356 C T LRRC16B Missense_Mutation p.R912C 0.48 deleterious(0) possibly_damaging(0.548) TCGA-DX-AB2O-01 14 81864757 81864757 C T STON2 5'UTR 0.11 TCGA-DX-AB2O-01 15 44816508 44816508 A T CTDSPL2 3'UTR 0.33 TCGA-DX-AB2O-01 15 77906434 77906434 G T LINGO1 Silent p.G605G 0.15 TCGA-DX-AB2O-01 15 81271705 81271705 C T MESDC2 Missense_Mutation p.G187D 0.07 deleterious(0.01) probably_damaging(0.951) TCGA-DX-AB2O-01 16 1033836 1033836 G A SOX8 Silent p.K177K 0.12 TCGA-DX-AB2O-01 16 19659138 19659138 G A C16orf62 Silent p.L743L 0.14 TCGA-DX-AB2O-01 16 27777745 27777745 G A KIAA0556 Missense_Mutation p.G1309S 0.19 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2O-01 16 70908403 70908403 T C HYDIN Missense_Mutation p.R3585G 0.17 benign(0) TCGA-DX-AB2O-01 17 1577107 1577107 C T PRPF8 Missense_Mutation p.G1127S 0.24 deleterious(0.01) possibly_damaging(0.899) TCGA-DX-AB2O-01 17 1584027 1584027 G A PRPF8 Missense_Mutation p.S364L 0.29 tolerated(0.35) benign(0.001) TCGA-DX-AB2O-01 17 1584068 1584068 G C PRPF8 Missense_Mutation p.F350L 0.19 deleterious(0.01) benign(0.184) TCGA-DX-AB2O-01 17 2235463 2235463 C T TSR1 Missense_Mutation p.R499Q 0.15 deleterious(0) probably_damaging(0.972) TCGA-DX-AB2O-01 17 3628705 3628705 A T GSG2 Missense_Mutation p.E492D 0.55 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2O-01 17 4688744 4688744 G A VMO1 Silent p.C174C 0.25 TCGA-DX-AB2O-01 17 74878347 74878347 G A MGAT5B Missense_Mutation p.R110Q 0.62 tolerated(0.09) possibly_damaging(0.614) TCGA-DX-AB2O-01 18 19029673 19029673 G A GREB1L Silent p.A532A 0.07 TCGA-DX-AB2O-01 18 24436335 24436335 T C AQP4 Missense_Mutation p.Q271R 0.41 tolerated(0.35) benign(0.016) TCGA-DX-AB2O-01 18 51887076 51887076 A G C18orf54 Missense_Mutation p.Y45C 0.16 deleterious(0) probably_damaging(0.993) TCGA-DX-AB2O-01 18 52890723 52890723 T G TCF4 3'Flank 0.17 TCGA-DX-AB2O-01 19 10754282 10754282 C T SLC44A2 3'UTR 0.16 TCGA-DX-AB2O-01 19 11032985 11032985 G A CARM1 3'UTR 0.48 TCGA-DX-AB2O-01 19 19612198 19612198 C T GATAD2A Silent p.T491T 0.28 TCGA-DX-AB2O-01 19 33281613 33281613 G T TDRD12 3'UTR 0.21 TCGA-DX-AB2O-01 19 37266347 37266347 G A CTD-2162K18.4 Missense_Mutation p.A65T 0.29 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-DX-AB2O-01 19 41758777 41758777 G A AXL Missense_Mutation p.E611K 0.25 deleterious(0.03) possibly_damaging(0.7) TCGA-DX-AB2O-01 19 50912024 50912024 C T POLD1 Intron 0.36 TCGA-DX-AB2O-01 19 51504392 51504392 G A KLK8 Missense_Mutation p.T11M 0.33 tolerated_low_confidence(0.19) benign(0.001) TCGA-DX-AB2O-01 19 54080308 54080308 A T ZNF331 Missense_Mutation p.K165M 0.32 deleterious(0) probably_damaging(0.969) TCGA-DX-AB2O-01 1 155150521 155150521 G - TRIM46 Frame_Shift_Del p.L320Wfs*99 0.41 TCGA-DX-AB2O-01 1 156837905 156837905 G A NTRK1 Silent p.S146S 0.40 TCGA-DX-AB2O-01 1 158368791 158368791 T C OR10T2 Missense_Mutation p.I156V 0.11 tolerated(1) benign(0.032) TCGA-DX-AB2O-01 1 159283694 159283694 G A OR10J3 Silent p.H252H 0.51 TCGA-DX-AB2O-01 1 160853281 160853281 A G ITLN1 Missense_Mutation p.S32P 0.06 tolerated(0.22) benign(0.195) TCGA-DX-AB2O-01 1 177247899 177247899 C T BRINP2 Missense_Mutation p.R405C 0.24 deleterious(0.01) possibly_damaging(0.549) TCGA-DX-AB2O-01 1 17727910 17727910 C G PADI6 RNA 0.06 TCGA-DX-AB2O-01 1 214706552 214706552 C T PTPN14 Intron 0.30 TCGA-DX-AB2O-01 1 39781270 39781270 C G MACF1 Missense_Mutation p.S1124C 0.07 possibly_damaging(0.716) TCGA-DX-AB2O-01 1 39781356 39781356 C G MACF1 Missense_Mutation p.L1153V 0.06 benign(0.1) TCGA-DX-AB2O-01 1 55446692 55446692 C T TMEM61 5'UTR 0.10 TCGA-DX-AB2O-01 20 33875719 33875719 C T FAM83C Missense_Mutation p.R288H 0.11 tolerated(0.12) benign(0.212) TCGA-DX-AB2O-01 21 47819574 47819574 C T PCNT Missense_Mutation p.S1552L 0.88 possibly_damaging(0.602) TCGA-DX-AB2O-01 22 31266576 31266576 C T OSBP2 Silent p.D338D 0.32 TCGA-DX-AB2O-01 22 32015760 32015760 C T PISD Silent p.T322T 0.17 TCGA-DX-AB2O-01 2 105882104 105882104 G C TGFBRAP1 3'UTR 0.19 TCGA-DX-AB2O-01 2 180056580 180056580 G A SESTD1 5'UTR 0.85 TCGA-DX-AB2O-01 2 202488979 202488979 T C TMEM237 Silent p.%3D 0.56 TCGA-DX-AB2O-01 2 228973608 228973608 C T SPHKAP Silent p.Q62Q 0.11 TCGA-DX-AB2O-01 2 25469969 25469976 GTGGCCTG - DNMT3A Frame_Shift_Del p.Q356Vfs*34 0.48 TCGA-DX-AB2O-01 2 26358021 26358032 TTTTATTTGTTC - RAB10 3'UTR 0.54 TCGA-DX-AB2O-01 2 98354224 98354224 G A ZAP70 Missense_Mutation p.R496H 0.36 tolerated(0.1) probably_damaging(0.953) TCGA-DX-AB2O-01 3 10342789 10342789 G T SEC13 3'UTR 0.53 TCGA-DX-AB2O-01 3 128199922 128199922 G C GATA2 Silent p.P461P 0.22 TCGA-DX-AB2O-01 3 157820521 157820521 G A SHOX2 Silent p.A191A 0.26 TCGA-DX-AB2O-01 3 51432816 51432816 T A RBM15B 3'UTR 0.52 TCGA-DX-AB2O-01 3 51812869 51812869 G A IQCF6 Missense_Mutation p.R32W 0.29 deleterious(0.02) probably_damaging(0.978) TCGA-DX-AB2O-01 4 103822464 103822464 T C SLC9B1 Missense_Mutation p.E453G 0.03 deleterious(0) possibly_damaging(0.901) TCGA-DX-AB2O-01 4 62383050 62383050 C A LPHN3 Intron 0.61 TCGA-DX-AB2O-01 4 71509959 71509959 G A ENAM Missense_Mutation p.R939K 0.10 tolerated(0.52) benign(0.046) TCGA-DX-AB2O-01 5 137475544 137475544 G T BRD8 3'UTR 0.22 TCGA-DX-AB2O-01 5 140503386 140503386 G A PCDHB4 Silent p.S602S 0.34 TCGA-DX-AB2O-01 6 33054364 33054364 G A HLA-DPB1 3'UTR 0.23 TCGA-DX-AB2O-01 7 100681044 100681044 G T MUC17 Missense_Mutation p.S2116I 0.19 unknown(0) TCGA-DX-AB2O-01 7 11446546 11446546 G T THSD7A Nonsense_Mutation p.C1351* 0.20 TCGA-DX-AB2O-01 7 11446555 11446555 C G THSD7A Missense_Mutation p.W1348C 0.18 deleterious(0) probably_damaging(0.991) TCGA-DX-AB2O-01 7 124387397 124387397 C A GPR37 Missense_Mutation p.V342F 0.61 deleterious(0) possibly_damaging(0.726) TCGA-DX-AB2O-01 7 128490892 128490892 C G FLNC Missense_Mutation p.P1812A 0.50 tolerated(0.12) possibly_damaging(0.829) TCGA-DX-AB2O-01 7 21600753 21600753 C A DNAH11 Missense_Mutation p.P316H 0.49 probably_damaging(0.924) TCGA-DX-AB2O-01 8 107781809 107781809 G C ABRA Missense_Mutation p.P204A 0.50 tolerated(0.82) benign(0.002) TCGA-DX-AB2O-01 8 53073948 53073948 T C ST18 Silent p.P527P 0.24 TCGA-DX-AB2O-01 8 6302980 6302980 G T MCPH1 Missense_Mutation p.Q579H 0.15 tolerated(0.24) benign(0.244) TCGA-DX-AB2O-01 9 127660878 127660878 C A GOLGA1 Nonsense_Mutation p.E453* 0.18 TCGA-DX-AB2O-01 9 131347005 131347027 GATTTAATTGGGGTCCAGAATCT CA SPTAN1 In_Frame_Del p.D815_L822delinsQ 0.41 TCGA-DX-AB2O-01 9 131347022 131347027 GAATCT - SPTAN1 In_Frame_Del p.N821_L822del 0.19 TCGA-DX-AB2O-01 9 139401405 139401405 C T NOTCH1 Missense_Mutation p.V1222M 0.25 tolerated(0.14) benign(0.054) TCGA-DX-AB2O-01 9 2158951 2158951 A C SMARCA2 Intron 0.48 TCGA-DX-AB2O-01 9 90502475 90502475 C A SPATA31E1 Missense_Mutation p.Q1025K 0.26 tolerated(0.09) benign(0.413) TCGA-DX-AB2O-01 X 150155663 150155663 T G HMGB3 Missense_Mutation p.I118S 0.44 tolerated(0.05) possibly_damaging(0.457) TCGA-DX-AB2O-01 X 27765824 27765824 C A DCAF8L2 Missense_Mutation p.T271K 0.17 tolerated(1) benign(0.001) TCGA-DX-AB2O-01 X 37029724 37029724 A T FAM47C 3'UTR 0.26 TCGA-DX-AB2O-01 X 37642769 37642769 T C CYBB Silent p.P56P 0.13 TCGA-DX-AB2O-01 X 49965645 49965645 C T AKAP4 5'UTR 0.10 TCGA-DX-AB2P-01 10 98240208 98240208 A - TLL2 Frame_Shift_Del p.W62Gfs*6 0.27 TCGA-DX-AB2P-01 11 118352703 118352709 TGGTCAT - KMT2A Frame_Shift_Del p.L1303Pfs*51 0.63 TCGA-DX-AB2P-01 11 121178199 121178199 G T SC5D Missense_Mutation p.G293V 0.17 tolerated(0.09) benign(0.092) TCGA-DX-AB2P-01 11 4661964 4661964 T C OR51D1 Missense_Mutation p.V315A 0.09 deleterious(0.02) benign(0.06) TCGA-DX-AB2P-01 11 67263036 67263036 C T PITPNM1 Silent p.E785E 0.54 TCGA-DX-AB2P-01 11 6816255 6816255 C A OR6A2 Missense_Mutation p.A229S 0.10 deleterious(0.02) possibly_damaging(0.734) TCGA-DX-AB2P-01 12 55725940 55725940 C A OR6C3 Silent p.T152T 0.13 TCGA-DX-AB2P-01 13 96513064 96513064 G C UGGT2 Missense_Mutation p.H1240D 0.12 deleterious(0) probably_damaging(1) TCGA-DX-AB2P-01 14 100828076 100828076 A C WARS Missense_Mutation p.S94R 0.33 tolerated(0.19) benign(0.219) TCGA-DX-AB2P-01 14 31813237 31813237 G A HEATR5A Silent p.S738S 0.33 TCGA-DX-AB2P-01 14 66965126 66965126 T C LINC00238 RNA 0.23 TCGA-DX-AB2P-01 14 69847207 69847207 C A ERH 3'UTR 0.43 TCGA-DX-AB2P-01 14 70713103 70713103 T C ADAM21P1 RNA 0.32 TCGA-DX-AB2P-01 14 89343888 89343888 C A TTC8 3'UTR 0.15 TCGA-DX-AB2P-01 15 28446685 28446685 C A HERC2 Missense_Mutation p.V2545L 0.05 benign(0.015) TCGA-DX-AB2P-01 15 51791871 51791871 T A DMXL2 Missense_Mutation p.T1184S 0.23 deleterious(0) probably_damaging(0.998) TCGA-DX-AB2P-01 15 78393658 78393658 G A SH2D7 Missense_Mutation p.G355R 0.24 tolerated(0.84) benign(0.01) TCGA-DX-AB2P-01 16 67304819 67304819 G A SLC9A5 Silent p.E799E 0.87 TCGA-DX-AB2P-01 16 84230349 84230349 C T ADAD2 Silent p.A623A 0.74 TCGA-DX-AB2P-01 17 11696829 11696829 T G DNAH9 Missense_Mutation p.F2691V 0.05 benign(0.196) TCGA-DX-AB2P-01 17 1494943 1494943 G A SLC43A2 Silent p.A215A 0.26 TCGA-DX-AB2P-01 17 44103501 44103502 AG - MAPT 3'UTR 0.48 TCGA-DX-AB2P-01 17 53399504 53399504 C T HLF 3'UTR 0.19 TCGA-DX-AB2P-01 19 10079110 10079110 T C COL5A3 Missense_Mutation p.D1422G 0.29 unknown(0) TCGA-DX-AB2P-01 19 2214468 2214468 A T DOT1L Splice_Site p.X600_splice 0.09 TCGA-DX-AB2P-01 19 41949946 41949946 A G C19orf69 Silent p.G70G 0.14 TCGA-DX-AB2P-01 19 48517529 48517529 G A ELSPBP1 Missense_Mutation p.V58M 0.57 tolerated(0.1) possibly_damaging(0.788) TCGA-DX-AB2P-01 19 52250190 52250190 C T FPR1 Missense_Mutation p.A20T 0.08 tolerated(0.73) benign(0.009) TCGA-DX-AB2P-01 1 12382770 12382770 G A VPS13D Missense_Mutation p.E2628K 0.45 benign(0.015) TCGA-DX-AB2P-01 1 155290825 155290825 G C RUSC1 Intron 0.60 TCGA-DX-AB2P-01 1 197398635 197398635 T A CRB1 Nonsense_Mutation p.C911* 0.41 TCGA-DX-AB2P-01 1 198608430 198608430 C G PTPRC Missense_Mutation p.A11G 0.47 deleterious_low_confidence(0) possibly_damaging(0.864) TCGA-DX-AB2P-01 1 225440114 225440114 A T DNAH14 Missense_Mutation p.Q1860L 0.28 deleterious(0.03) benign(0) TCGA-DX-AB2P-01 1 247150681 247150681 G T ZNF695 Missense_Mutation p.P379Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2P-01 1 37271869 37271869 G A GRIK3 Missense_Mutation p.A717V 0.71 tolerated(1) benign(0.003) TCGA-DX-AB2P-01 1 47395951 47395951 C A CYP4A11 Nonsense_Mutation p.E466* 0.05 TCGA-DX-AB2P-01 21 35472657 35472657 G T SLC5A3 3'UTR 0.46 TCGA-DX-AB2P-01 22 26286800 26286800 G A MYO18B Silent p.R1464R 0.52 TCGA-DX-AB2P-01 2 166247504 166247504 A G SCN2A 3'UTR 0.41 TCGA-DX-AB2P-01 2 29169805 29169805 C T WDR43 3'UTR 0.17 TCGA-DX-AB2P-01 2 75276645 75276645 G T TACR1 Missense_Mutation p.L380M 0.14 tolerated(0.13) benign(0.221) TCGA-DX-AB2P-01 2 84885458 84885458 C T DNAH6 Missense_Mutation p.R1934C 0.33 deleterious(0.01) benign(0.006) TCGA-DX-AB2P-01 3 124160810 124160810 C T KALRN Missense_Mutation p.R1071W 0.19 deleterious(0) probably_damaging(0.954) TCGA-DX-AB2P-01 5 145890060 145890060 T G TCERG1 Nonsense_Mutation p.L1051* 0.10 TCGA-DX-AB2P-01 5 180664689 180664689 G A GNB2L1 Silent p.L270L 0.09 TCGA-DX-AB2P-01 5 2747027 2747027 C G IRX2 Intron 0.06 TCGA-DX-AB2P-01 5 31526229 31526229 G A DROSHA Nonsense_Mutation p.R271* 0.15 TCGA-DX-AB2P-01 5 43702778 43702778 A G NNT Silent p.Q1017Q 0.48 TCGA-DX-AB2P-01 6 112671348 112671348 T C RFPL4B Silent p.H146H 0.31 TCGA-DX-AB2P-01 6 136599135 136599135 A T BCLAF1 Missense_Mutation p.I295N 0.16 tolerated(0.05) benign(0.331) TCGA-DX-AB2P-01 6 139498293 139498293 A T HECA 3'UTR 0.31 TCGA-DX-AB2P-01 6 36199587 36199588 - A BRPF3 3'UTR 0.14 TCGA-DX-AB2P-01 7 21698459 21698459 C T DNAH11 Missense_Mutation p.T1718M 0.64 possibly_damaging(0.788) TCGA-DX-AB2P-01 7 98256582 98256582 C A NPTX2 Missense_Mutation p.L332M 0.43 deleterious(0.05) probably_damaging(0.93) TCGA-DX-AB2P-01 8 124453718 124453718 C A WDYHV1 3'UTR 0.32 TCGA-DX-AB2P-01 8 33246616 33246616 G T FUT10 Silent p.I359I 0.43 TCGA-DX-AB2P-01 9 101894898 101894898 C G TGFBR1 Missense_Mutation p.R151G 0.38 deleterious(0.02) benign(0.182) TCGA-DX-AB2P-01 9 138235877 138235877 T C C9orf62 Missense_Mutation p.L28P 0.37 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-DX-AB2P-01 9 77427304 77427304 G T TRPM6 Silent p.R452R 0.48 TCGA-DX-AB2P-01 X 155005772 155005772 C G SPRY3 3'UTR 0.10 TCGA-DX-AB2P-01 X 37027036 37027036 G T FAM47C Nonsense_Mutation p.E185* 0.85 TCGA-DX-AB2P-01 X 67945440 67945440 G A STARD8 3'UTR 0.06 TCGA-DX-AB2P-01 X 76952083 76952084 - A ATRX Frame_Shift_Ins p.M118Yfs*19 0.40 TCGA-DX-AB2Q-01 10 102586767 102586767 G A PAX2 Silent p.G364G 0.05 TCGA-DX-AB2Q-01 10 129901119 129901119 G C MKI67 Silent p.P2995P 0.21 TCGA-DX-AB2Q-01 10 45602152 45602152 G C RSU1P2 RNA 0.20 TCGA-DX-AB2Q-01 10 87482894 87482894 G A GRID1 Silent p.G621G 0.35 TCGA-DX-AB2Q-01 10 93624152 93624152 G T TNKS2 3'UTR 0.21 TCGA-DX-AB2Q-01 11 4661029 4661029 G T OR51D1 Missense_Mutation p.K3N 0.40 tolerated_low_confidence(0.26) benign(0.002) TCGA-DX-AB2Q-01 11 47489973 47489973 C T CELF1 3'Flank 0.35 TCGA-DX-AB2Q-01 11 47490049 47490049 C T CELF1 3'Flank 0.41 TCGA-DX-AB2Q-01 11 4790430 4790430 A G OR51F1 Missense_Mutation p.F240L 0.15 tolerated(0.88) possibly_damaging(0.558) TCGA-DX-AB2Q-01 11 6190828 6190828 A C OR52B2 Missense_Mutation p.C243W 0.32 deleterious(0) probably_damaging(1) TCGA-DX-AB2Q-01 11 65305961 65305961 G A SCYL1 Missense_Mutation p.R784Q 0.26 tolerated(0.13) benign(0.148) TCGA-DX-AB2Q-01 11 66044001 66044001 G A RAB1B 3'UTR 0.23 TCGA-DX-AB2Q-01 11 66105072 66105072 A C BRMS1 3'UTR 0.23 TCGA-DX-AB2Q-01 11 70189796 70189796 G T PPFIA1 Missense_Mutation p.D577Y 0.34 deleterious(0) probably_damaging(0.953) TCGA-DX-AB2Q-01 12 1017078 1017078 G C WNK1 Missense_Mutation p.A2237P 0.09 deleterious(0.04) possibly_damaging(0.811) TCGA-DX-AB2Q-01 12 113753242 113753242 C T SLC8B1 Missense_Mutation p.V345M 0.15 deleterious(0.04) benign(0.22) TCGA-DX-AB2Q-01 12 12795877 12795877 T C CREBL2 3'UTR 0.04 TCGA-DX-AB2Q-01 12 13237900 13237900 G T GSG1 Missense_Mutation p.Q319K 0.24 deleterious(0.04) benign(0.266) TCGA-DX-AB2Q-01 12 18649044 18649044 A G PIK3C2G Missense_Mutation p.I907V 0.21 tolerated(0.54) benign(0.063) TCGA-DX-AB2Q-01 12 21661451 21661451 G C GOLT1B Missense_Mutation p.L84F 0.10 tolerated(0.62) benign(0.009) TCGA-DX-AB2Q-01 12 25358420 25358433 TACAAAATGTGCAT GTGCTTTC KRAS 3'Flank 0.22 TCGA-DX-AB2Q-01 12 25358433 25358434 - TC KRAS 3'Flank 0.16 TCGA-DX-AB2Q-01 12 80199528 80199528 G A PPP1R12A Missense_Mutation p.A615V 0.29 tolerated(0.22) probably_damaging(0.993) TCGA-DX-AB2Q-01 14 102549597 102549597 C A HSP90AA1 Missense_Mutation p.R632L 0.12 deleterious_low_confidence(0.03) unknown(0) TCGA-DX-AB2Q-01 14 20757780 20757780 C G TTC5 3'UTR 0.34 TCGA-DX-AB2Q-01 14 47311049 47311049 G T MDGA2 3'UTR 0.15 TCGA-DX-AB2Q-01 14 70512501 70512501 C A SLC8A3 3'UTR 0.12 TCGA-DX-AB2Q-01 14 75476222 75476245 TACAGATTTTTGCTCAGAAATGGC - EIF2B2 3'UTR 0.17 TCGA-DX-AB2Q-01 14 90651110 90651110 C T KCNK13 Silent p.D330D 0.36 TCGA-DX-AB2Q-01 14 91739079 91739079 C T CCDC88C Missense_Mutation p.G1993S 0.41 tolerated(0.8) benign(0.001) TCGA-DX-AB2Q-01 15 24927621 24927621 T G NPAP1 3'UTR 0.05 TCGA-DX-AB2Q-01 15 40764365 40764365 A T CHST14 Missense_Mutation p.H318L 0.18 tolerated(0.64) benign(0.02) TCGA-DX-AB2Q-01 15 41797191 41797191 C T LTK Missense_Mutation p.G666E 0.14 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-DX-AB2Q-01 15 44719710 44719710 T G CTDSPL2 5'UTR 0.15 TCGA-DX-AB2Q-01 15 48729275 48729275 C G FBN1 Splice_Site p.X2127_splice 0.33 TCGA-DX-AB2Q-01 15 71124995 71124995 A G LARP6 Missense_Mutation p.I291T 0.26 deleterious(0) possibly_damaging(0.87) TCGA-DX-AB2Q-01 15 74425761 74425761 G A ISLR2 Silent p.V222V 0.19 TCGA-DX-AB2Q-01 16 2026921 2026921 A T TBL3 Missense_Mutation p.I467F 0.45 tolerated(0.53) benign(0.002) TCGA-DX-AB2Q-01 16 2156948 2156948 A C PKD1 Missense_Mutation p.V2356G 0.13 probably_damaging(1) TCGA-DX-AB2Q-01 16 29339873 29339873 G A SNX29P2 Splice_Site 0.11 TCGA-DX-AB2Q-01 16 30593748 30593748 C T ZNF785 3'UTR 0.18 TCGA-DX-AB2Q-01 16 89347362 89347362 T C ANKRD11 Missense_Mutation p.D1863G 0.23 benign(0.352) TCGA-DX-AB2Q-01 16 89761404 89761404 G A CDK10 Silent p.K286K 0.27 TCGA-DX-AB2Q-01 17 3030438 3030438 C A OR1G1 Missense_Mutation p.M136I 0.60 deleterious(0.02) possibly_damaging(0.838) TCGA-DX-AB2Q-01 17 76047077 76047077 C A TNRC6C Missense_Mutation p.T645K 0.20 tolerated(0.42) benign(0.197) TCGA-DX-AB2Q-01 17 77681418 77681418 G C CTD-2116F7.1 RNA 0.09 TCGA-DX-AB2Q-01 17 80050656 80050656 G T FASN Missense_Mutation p.Q271K 0.15 tolerated(0.27) benign(0.012) TCGA-DX-AB2Q-01 18 52895105 52895105 A C TCF4 3'Flank 0.33 TCGA-DX-AB2Q-01 19 14877108 14877108 G T EMR2 Nonsense_Mutation p.C191* 0.56 TCGA-DX-AB2Q-01 19 2426840 2426840 C T TIMM13 3'UTR 0.17 TCGA-DX-AB2Q-01 19 4538293 4538293 G A LRG1 Nonsense_Mutation p.Q235* 0.14 TCGA-DX-AB2Q-01 19 45883052 45883052 G T PPP1R13L 3'UTR 0.25 TCGA-DX-AB2Q-01 19 55340890 55340890 C A KIR3DL1 Missense_Mutation p.L359I 0.37 deleterious(0.01) benign(0.298) TCGA-DX-AB2Q-01 19 55672542 55672542 A G DNAAF3 Missense_Mutation p.V336A 0.45 deleterious(0) probably_damaging(0.911) TCGA-DX-AB2Q-01 1 118509355 118509355 C T SPAG17 Missense_Mutation p.E2137K 0.21 deleterious(0.01) benign(0.041) TCGA-DX-AB2Q-01 1 1576445 1576445 C T CDK11B Missense_Mutation p.D350N 0.29 unknown(0) TCGA-DX-AB2Q-01 1 16578257 16578257 G A FBXO42 Silent p.F354F 0.19 TCGA-DX-AB2Q-01 1 17266566 17266566 A C CROCC Missense_Mutation p.S596R 0.06 possibly_damaging(0.84) TCGA-DX-AB2Q-01 1 200940258 200940258 G T KIF21B 3'Flank 0.50 TCGA-DX-AB2Q-01 1 200940259 200940259 G T KIF21B 3'Flank 0.51 TCGA-DX-AB2Q-01 1 228447341 228447341 C A OBSCN Missense_Mutation p.S1667R 0.10 possibly_damaging(0.887) TCGA-DX-AB2Q-01 1 242252929 242252929 C T PLD5 3'UTR 0.76 TCGA-DX-AB2Q-01 1 29618406 29618406 A G PTPRU Missense_Mutation p.T792A 0.10 tolerated(0.18) benign(0.001) TCGA-DX-AB2Q-01 1 45469037 45469037 C T HECTD3 3'UTR 0.34 TCGA-DX-AB2Q-01 1 67206385 67206385 C T SGIP1 Missense_Mutation p.S760F 0.37 deleterious(0) possibly_damaging(0.796) TCGA-DX-AB2Q-01 1 89325834 89325834 G A GTF2B Nonsense_Mutation p.R132* 0.35 TCGA-DX-AB2Q-01 20 24949549 24949549 C T APMAP Nonsense_Mutation p.W340* 0.13 TCGA-DX-AB2Q-01 20 3218362 3218362 C A SLC4A11 Intron 0.79 TCGA-DX-AB2Q-01 20 33588591 33588591 G C MYH7B Missense_Mutation p.Q1775H 0.50 benign(0.056) TCGA-DX-AB2Q-01 20 42275733 42275733 G A IFT52 3'UTR 0.51 TCGA-DX-AB2Q-01 20 44515227 44515240 CATGTGCCTGCTCC - SPATA25 Frame_Shift_Del p.W200Cfs*14 0.33 TCGA-DX-AB2Q-01 20 49366862 49366862 C T PARD6B Missense_Mutation p.S319L 0.38 tolerated_low_confidence(0.09) benign(0.025) TCGA-DX-AB2Q-01 20 51870078 51870080 AAA - TSHZ2 In_Frame_Del p.K28del 0.28 TCGA-DX-AB2Q-01 22 39175303 39175303 C A DNAL4 3'UTR 0.11 TCGA-DX-AB2Q-01 22 41513493 41513493 T G EP300 Missense_Mutation p.S133A 0.14 unknown(0) TCGA-DX-AB2Q-01 22 43604213 43604213 T A SCUBE1 Missense_Mutation p.T867S 0.19 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Q-01 22 50278947 50278948 - A ZBED4 Frame_Shift_Ins p.N548Kfs*9 0.14 TCGA-DX-AB2Q-01 2 100919499 100919499 G C LONRF2 Missense_Mutation p.Q269E 0.14 tolerated(0.24) benign(0) TCGA-DX-AB2Q-01 2 109380397 109380397 C A RANBP2 Missense_Mutation p.F1134L 0.06 deleterious(0.02) benign(0.036) TCGA-DX-AB2Q-01 2 164465311 164465311 C T FIGN 3'UTR 0.16 TCGA-DX-AB2Q-01 2 1921033 1921033 T C MYT1L Missense_Mutation p.Y519C 0.32 deleterious(0) probably_damaging(1) TCGA-DX-AB2Q-01 2 73161038 73161038 G A EMX1 Silent p.T276T 0.32 TCGA-DX-AB2Q-01 3 125652482 125652482 C A ALG1L Silent p.G12G 0.14 TCGA-DX-AB2Q-01 3 178560948 178560948 C T KCNMB2 3'UTR 0.37 TCGA-DX-AB2Q-01 3 27442283 27442283 T C SLC4A7 Missense_Mutation p.N791S 0.26 tolerated(1) benign(0.002) TCGA-DX-AB2Q-01 3 49750194 49750194 G A RNF123 Intron 0.30 TCGA-DX-AB2Q-01 3 52550092 52550092 C A STAB1 Missense_Mutation p.L1328M 0.08 tolerated(0.59) benign(0.096) TCGA-DX-AB2Q-01 3 89259017 89259017 A G EPHA3 Missense_Mutation p.E54G 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-DX-AB2Q-01 4 115997952 115997952 G A NDST4 Missense_Mutation p.L81F 0.32 deleterious(0) probably_damaging(0.99) TCGA-DX-AB2Q-01 4 1244275 1244275 G T CTBP1 5'Flank 0.16 TCGA-DX-AB2Q-01 4 156773430 156773430 A G ASIC5 Silent p.F208F 0.20 TCGA-DX-AB2Q-01 5 140605261 140605261 C T PCDHB14 Silent p.P728P 0.31 TCGA-DX-AB2Q-01 5 140625567 140625567 A G PCDHB15 Missense_Mutation p.K141E 0.44 tolerated_low_confidence(0.07) benign(0.043) TCGA-DX-AB2Q-01 5 172461596 172461596 C T ATP6V0E1 3'UTR 0.06 TCGA-DX-AB2Q-01 5 37239051 37239051 T A C5orf42 Silent p.V282V 0.18 TCGA-DX-AB2Q-01 5 90001356 90001356 A G GPR98 Missense_Mutation p.I2842M 0.15 benign(0.013) TCGA-DX-AB2Q-01 5 93855892 93855892 G T KIAA0825 3'UTR 0.36 TCGA-DX-AB2Q-01 6 25966859 25966859 C T TRIM38 Missense_Mutation p.H37Y 0.10 tolerated(0.45) benign(0.015) TCGA-DX-AB2Q-01 6 28499586 28499586 C A GPX5 Silent p.P91P 0.05 TCGA-DX-AB2Q-01 6 29429643 29429643 T A OR2H1 Missense_Mutation p.Y33N 0.31 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Q-01 6 32056601 32056601 G A TNXB Missense_Mutation p.R914W 0.28 probably_damaging(0.995) TCGA-DX-AB2Q-01 6 37186447 37186447 G T TMEM217 Missense_Mutation p.D120E 0.16 tolerated(0.86) benign(0.008) TCGA-DX-AB2Q-01 7 112721789 112721789 C A GPR85 3'UTR 0.60 TCGA-DX-AB2Q-01 7 143052842 143052842 C A FAM131B 3'UTR 0.50 TCGA-DX-AB2Q-01 7 143771448 143771448 G T OR2A25 Missense_Mutation p.G46W 0.54 deleterious(0.03) probably_damaging(0.928) TCGA-DX-AB2Q-01 7 14647116 14647116 T A DGKB Missense_Mutation p.Q460L 0.10 deleterious(0) possibly_damaging(0.593) TCGA-DX-AB2Q-01 7 15725770 15725770 C G MEOX2 Missense_Mutation p.Q86H 0.16 tolerated(0.19) possibly_damaging(0.781) TCGA-DX-AB2Q-01 7 47894630 47894630 C G PKD1L1 Missense_Mutation p.R1570T 0.27 tolerated(0.17) benign(0.013) TCGA-DX-AB2Q-01 7 91641895 91641895 G A AKAP9 Silent p.K1157K 0.52 TCGA-DX-AB2Q-01 8 102731522 102731522 T C NCALD Silent p.G112G 0.33 TCGA-DX-AB2Q-01 8 103265687 103265687 A G UBR5 3'UTR 0.49 TCGA-DX-AB2Q-01 8 1639774 1639774 G C DLGAP2 Missense_Mutation p.W846C 0.29 deleterious(0.03) probably_damaging(0.928) TCGA-DX-AB2Q-01 8 24184147 24184147 A T ADAM28 Missense_Mutation p.Q324L 0.08 deleterious(0) benign(0.345) TCGA-DX-AB2Q-01 8 38827160 38827160 C T PLEKHA2 Silent p.F379F 0.66 TCGA-DX-AB2Q-01 8 54141668 54141668 C A OPRK1 3'UTR 0.50 TCGA-DX-AB2Q-01 8 75945570 75945570 G T CRISPLD1 3'UTR 0.49 TCGA-DX-AB2Q-01 8 99964138 99964139 - TA OSR2 3'UTR 0.30 TCGA-DX-AB2Q-01 9 123912674 123912674 G A CNTRL Missense_Mutation p.M1292I 0.43 benign(0) TCGA-DX-AB2Q-01 9 12704570 12704570 C A TYRP1 Missense_Mutation p.L376I 0.05 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Q-01 9 13217183 13217183 T C MPDZ Silent p.K399K 0.27 TCGA-DX-AB2Q-01 9 35386248 35386248 C G UNC13B Missense_Mutation p.I935M 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-DX-AB2Q-01 9 4665231 4665231 C A PPAPDC2 3'UTR 0.36 TCGA-DX-AB2Q-01 9 72882851 72882851 G A SMC5 Missense_Mutation p.V114M 0.31 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Q-01 9 90283512 90283512 G A DAPK1 Missense_Mutation p.D642N 0.31 tolerated(0.09) possibly_damaging(0.907) TCGA-DX-AB2Q-01 X 100653780 100653780 G - GLA Frame_Shift_Del p.P265Qfs*4 0.29 TCGA-DX-AB2Q-01 X 102884916 102884916 G A TCEAL1 Silent p.P24P 0.04 TCGA-DX-AB2Q-01 X 19410214 19410214 A G MAP3K15 Silent p.V779V 0.05 TCGA-DX-AB2Q-01 X 2827908 2827908 G A ARSD Silent p.D416D 0.19 TCGA-DX-AB2Q-01 X 62570182 62570182 C T SPIN4 Missense_Mutation p.D173N 0.24 deleterious(0) possibly_damaging(0.65) TCGA-DX-AB2Q-01 X 69830390 69830390 C T TEX11 Silent p.K600K 0.20 TCGA-DX-AB2S-01 11 6806992 6806992 T C OR2AG1 Missense_Mutation p.S242P 0.10 deleterious(0.01) benign(0.25) TCGA-DX-AB2S-01 12 59281683 59281683 C G LRIG3 Missense_Mutation p.D327H 0.08 deleterious(0) probably_damaging(0.972) TCGA-DX-AB2S-01 12 89742835 89742835 T G DUSP6 3'UTR 0.11 TCGA-DX-AB2S-01 17 36688221 36688221 C A SRCIN1 3'UTR 0.14 TCGA-DX-AB2S-01 17 7362852 7362852 G T ZBTB4 3'UTR 0.25 TCGA-DX-AB2S-01 17 77760627 77760627 C T CBX2 3'UTR 0.15 TCGA-DX-AB2S-01 18 30252980 30252980 T C KLHL14 3'UTR 0.08 TCGA-DX-AB2S-01 19 37117105 37117105 A G ZNF382 Missense_Mutation p.I102M 0.05 tolerated(0.07) benign(0.189) TCGA-DX-AB2S-01 1 150689620 150689620 G C HORMAD1 Missense_Mutation p.L58V 0.02 tolerated(0.4) possibly_damaging(0.903) TCGA-DX-AB2S-01 1 152186899 152186899 C G HRNR Missense_Mutation p.Q2402H 0.23 unknown(0) TCGA-DX-AB2S-01 1 152187037 152187037 C T HRNR Silent p.Q2356Q 0.21 TCGA-DX-AB2S-01 1 152187081 152187081 C G HRNR Missense_Mutation p.G2342R 0.22 unknown(0) TCGA-DX-AB2S-01 1 160008864 160008864 G A KCNJ10 3'UTR 0.04 TCGA-DX-AB2S-01 22 45938048 45938048 C T FBLN1 Silent p.C360C 0.07 TCGA-DX-AB2S-01 3 128533248 128533248 T G RAB7A 3'UTR 0.15 TCGA-DX-AB2S-01 3 97516999 97516999 T C ARL6 3'UTR 0.08 TCGA-DX-AB2S-01 4 17510934 17510934 A G QDPR Missense_Mutation p.I53T 0.09 tolerated(0.13) benign(0.002) TCGA-DX-AB2S-01 5 96098043 96098043 G A CAST Silent p.T592T 0.05 TCGA-DX-AB2S-01 6 43323573 43323573 G C ZNF318 Missense_Mutation p.A500G 0.06 possibly_damaging(0.717) TCGA-DX-AB2S-01 6 56484764 56484764 A G DST Intron 0.08 TCGA-DX-AB2S-01 6 64395588 64395588 T G PHF3 Missense_Mutation p.F655L 0.06 tolerated(1) benign(0) TCGA-DX-AB2S-01 7 107577718 107577718 G A LAMB1 Silent p.L1256L 0.15 TCGA-DX-AB2S-01 7 82581481 82581481 C T PCLO Missense_Mutation p.V2930I 0.08 unknown(0) TCGA-DX-AB2S-01 8 126011769 126011769 C T SQLE Missense_Mutation p.L42F 0.06 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-DX-AB2S-01 8 145948119 145948119 A G ZNF251 Missense_Mutation p.I309T 0.09 tolerated(0.49) benign(0.415) TCGA-DX-AB2S-01 8 23118501 23118501 T C CHMP7 3'UTR 0.24 TCGA-DX-AB2S-01 X 129190633 129190633 G A BCORL1 3'UTR 0.08 TCGA-DX-AB2S-01 X 70787352 70787352 T A OGT Silent p.I864I 0.08 TCGA-DX-AB2S-01 X 71521765 71521765 C T CITED1 Silent p.A156A 0.09 TCGA-DX-AB2T-01 10 75832526 75832526 C T VCL Nonsense_Mutation p.Q180* 0.08 TCGA-DX-AB2T-01 11 130103048 130103048 C T ZBTB44 3'UTR 0.21 TCGA-DX-AB2T-01 11 13424802 13424803 TA - BTBD10 Nonsense_Mutation p.Y343* 0.42 TCGA-DX-AB2T-01 11 17542934 17542934 C T USH1C Silent p.K348K 0.64 TCGA-DX-AB2T-01 11 30358393 30358393 T G ARL14EP 3'UTR 0.55 TCGA-DX-AB2T-01 11 49208258 49208258 T A FOLH1 Nonsense_Mutation p.K193* 0.18 TCGA-DX-AB2T-01 11 49208259 49208259 C A FOLH1 Missense_Mutation p.M192I 0.18 tolerated(0.09) benign(0.09) TCGA-DX-AB2T-01 11 57585250 57585250 C T CTNND1 3'UTR 0.58 TCGA-DX-AB2T-01 12 22797276 22797276 C T ETNK1 Intron 0.38 TCGA-DX-AB2T-01 12 26492048 26492048 C T ITPR2 3'UTR 0.22 TCGA-DX-AB2T-01 12 51100323 51100323 T C DIP2B Silent p.G803G 0.24 TCGA-DX-AB2T-01 12 6204464 6204464 G C VWF Intron 0.46 TCGA-DX-AB2T-01 12 7175059 7175059 G A C1S Missense_Mutation p.M393I 0.38 deleterious(0.03) benign(0.05) TCGA-DX-AB2T-01 12 7188023 7188023 G C C1R Missense_Mutation p.S592C 0.34 deleterious(0.02) benign(0.346) TCGA-DX-AB2T-01 12 85638644 85638644 A G LRRIQ1 Silent p.R1698R 0.43 TCGA-DX-AB2T-01 13 48955550 48955556 CGAATCA - RB1 Frame_Shift_Del p.R556Wfs*53 0.78 TCGA-DX-AB2T-01 13 98666438 98666438 C G IPO5 Silent p.V783V 0.17 TCGA-DX-AB2T-01 13 98666439 98666439 C T IPO5 Missense_Mutation p.L784F 0.16 deleterious(0.04) possibly_damaging(0.894) TCGA-DX-AB2T-01 13 98828591 98828591 G C RNF113B Missense_Mutation p.I300M 0.09 deleterious(0.05) benign(0.062) TCGA-DX-AB2T-01 14 23884311 23884311 G A MYH7 Missense_Mutation p.R1818W 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB2T-01 14 45584513 45584513 A T PRPF39 3'UTR 0.11 TCGA-DX-AB2T-01 15 24927645 24927645 A T NPAP1 3'UTR 0.38 TCGA-DX-AB2T-01 15 51740411 51740429 ACCTTGAATACACGAAAAG GTACTTTT DMXL2 3'UTR 0.38 TCGA-DX-AB2T-01 16 10971191 10971191 C T CIITA Missense_Mutation p.R2C 0.50 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-DX-AB2T-01 16 2889857 2889857 C T PRSS30P RNA 0.27 TCGA-DX-AB2T-01 16 57416226 57416226 C T CX3CL1 Missense_Mutation p.T159M 0.68 tolerated(0.17) benign(0.015) TCGA-DX-AB2T-01 16 67763633 67763633 G A RANBP10 Missense_Mutation p.P366L 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB2T-01 17 36003427 36003427 C T DDX52 Missense_Mutation p.R8H 0.59 tolerated(0.07) possibly_damaging(0.832) TCGA-DX-AB2T-01 17 6350862 6350862 C T FAM64A Missense_Mutation p.A125V 0.44 tolerated(0.35) benign(0.054) TCGA-DX-AB2T-01 17 6350925 6350925 C T FAM64A Missense_Mutation p.A146V 0.42 tolerated(0.17) benign(0.3) TCGA-DX-AB2T-01 17 66987021 66987021 C T ABCA9 Missense_Mutation p.R1265K 0.24 deleterious(0.01) probably_damaging(0.922) TCGA-DX-AB2T-01 17 6946314 6946314 C T SLC16A11 Missense_Mutation p.G118D 0.22 deleterious(0.01) probably_damaging(0.968) TCGA-DX-AB2T-01 17 7216153 7216153 G C GPS2 Silent p.G302G 0.33 TCGA-DX-AB2T-01 17 7216578 7216578 G C GPS2 Missense_Mutation p.Q253E 0.16 deleterious_low_confidence(0) benign(0.388) TCGA-DX-AB2T-01 17 73728050 73728050 A T ITGB4 Missense_Mutation p.E458V 0.31 deleterious(0) probably_damaging(0.987) TCGA-DX-AB2T-01 19 2110207 2110207 G T AP3D1 Silent p.A1064A 0.14 TCGA-DX-AB2T-01 19 42839246 42839246 G T MEGF8 Silent p.L206L 0.15 TCGA-DX-AB2T-01 19 47424544 47424544 G T ARHGAP35 Missense_Mutation p.R871L 0.38 tolerated(0.13) benign(0.262) TCGA-DX-AB2T-01 19 50462106 50462106 C A SIGLEC11 Missense_Mutation p.S386I 0.18 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2T-01 19 52873225 52873225 C T ZNF880 Missense_Mutation p.R3W 0.35 deleterious(0) possibly_damaging(0.776) TCGA-DX-AB2T-01 19 6501350 6501350 A G TUBB4A Silent p.S75S 0.16 TCGA-DX-AB2T-01 1 160396898 160396898 G C VANGL2 3'UTR 0.36 TCGA-DX-AB2T-01 1 178819382 178819383 - T ANGPTL1 3'UTR 0.07 TCGA-DX-AB2T-01 1 209824325 209824325 T A LAMB3 5'UTR 0.45 TCGA-DX-AB2T-01 1 236749733 236749733 C A HEATR1 Missense_Mutation p.A579S 0.14 deleterious(0.01) benign(0.03) TCGA-DX-AB2T-01 1 79403555 79403555 T C ELTD1 Missense_Mutation p.T233A 0.33 tolerated(1) benign(0.054) TCGA-DX-AB2T-01 20 418198 418198 G T TBC1D20 3'UTR 0.15 TCGA-DX-AB2T-01 20 45000515 45000515 A T ELMO2 Missense_Mutation p.Y504N 0.24 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2T-01 20 57244444 57244444 C G STX16 Missense_Mutation p.S164W 0.31 deleterious(0) possibly_damaging(0.897) TCGA-DX-AB2T-01 20 60701478 60701478 C T LSM14B Missense_Mutation p.A137V 0.09 tolerated(0.08) benign(0.419) TCGA-DX-AB2T-01 21 42080608 42080608 G T DSCAM Missense_Mutation p.P45T 0.35 deleterious(0.04) probably_damaging(1) TCGA-DX-AB2T-01 3 111887771 111887771 G A SLC9C1 Nonsense_Mutation p.R1064* 0.10 TCGA-DX-AB2T-01 3 127642390 127642390 G T KBTBD12 Missense_Mutation p.E162D 0.27 tolerated(0.15) probably_damaging(0.957) TCGA-DX-AB2T-01 3 136192441 136192441 C T STAG1 Silent p.Q355Q 0.35 TCGA-DX-AB2T-01 3 142051879 142051879 T - XRN1 Frame_Shift_Del p.N1331Mfs*33 0.22 TCGA-DX-AB2T-01 3 194996624 194996624 A - ACAP2 3'UTR 0.10 TCGA-DX-AB2T-01 4 118975296 118975296 C A NDST3 Missense_Mutation p.D77E 0.12 tolerated(0.37) benign(0.009) TCGA-DX-AB2T-01 4 83278573 83278573 C G HNRNPD Missense_Mutation p.D216H 0.18 deleterious(0.03) possibly_damaging(0.718) TCGA-DX-AB2T-01 5 140482079 140482079 G A PCDHB3 Missense_Mutation p.G616S 0.17 tolerated_low_confidence(1) benign(0.022) TCGA-DX-AB2T-01 5 68809856 68809856 A G OCLN Missense_Mutation p.M271V 0.32 deleterious(0.02) benign(0.007) TCGA-DX-AB2T-01 6 129634035 129634035 G T LAMA2 Missense_Mutation p.L1068F 0.20 tolerated(0.21) benign(0.119) TCGA-DX-AB2T-01 6 34100900 34100900 G A GRM4 Missense_Mutation p.A125V 0.15 deleterious(0.02) possibly_damaging(0.811) TCGA-DX-AB2T-01 6 40400756 40400756 A G LRFN2 Missense_Mutation p.S33P 0.20 deleterious(0) probably_damaging(0.979) TCGA-DX-AB2T-01 6 6225031 6225031 G A F13A1 Silent p.G287G 0.47 TCGA-DX-AB2T-01 6 76627552 76627552 C A MYO6 3'Flank 0.32 TCGA-DX-AB2T-01 6 83877585 83877585 A C DOPEY1 Missense_Mutation p.N2366T 0.13 tolerated(0.26) benign(0.253) TCGA-DX-AB2T-01 6 83877837 83877837 T C DOPEY1 Missense_Mutation p.I2450T 0.16 deleterious(0) probably_damaging(0.914) TCGA-DX-AB2T-01 6 83877852 83877852 A G DOPEY1 Missense_Mutation p.E2455G 0.15 deleterious(0) probably_damaging(0.994) TCGA-DX-AB2T-01 7 11521451 11521451 G A THSD7A Nonsense_Mutation p.R661* 0.05 TCGA-DX-AB2T-01 8 100889600 100889600 T G VPS13B 3'UTR 0.11 TCGA-DX-AB2T-01 8 114326938 114326938 C A CSMD3 Missense_Mutation p.G88V 0.26 deleterious(0.02) probably_damaging(0.931) TCGA-DX-AB2T-01 8 116616386 116616386 T C TRPS1 Missense_Mutation p.N604D 0.17 tolerated_low_confidence(0.09) probably_damaging(0.996) TCGA-DX-AB2T-01 8 141545618 141545618 G A AGO2 Silent p.I740I 0.22 TCGA-DX-AB2T-01 8 141549473 141549473 G A AGO2 Silent p.I705I 0.35 TCGA-DX-AB2T-01 8 22888375 22888375 G T TNFRSF10B Silent p.I87I 0.23 TCGA-DX-AB2T-01 8 32600393 32600393 G A NRG1 Intron 0.12 TCGA-DX-AB2T-01 9 139100668 139100668 T A QSOX2 Missense_Mutation p.Y668F 0.29 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2T-01 9 38571865 38571865 G T ANKRD18A 3'UTR 0.20 TCGA-DX-AB2T-01 9 6413598 6413598 C G UHRF2 Missense_Mutation p.F36L 0.12 tolerated(0.24) probably_damaging(0.977) TCGA-DX-AB2T-01 X 12736510 12736510 C T FRMPD4 Missense_Mutation p.R1189C 0.16 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-DX-AB2T-01 X 149114256 149114256 A T LINC00894 RNA 0.25 TCGA-DX-AB2T-01 X 149984546 149984546 A T CD99L2 Missense_Mutation p.W46R 0.36 tolerated(0.11) probably_damaging(0.995) TCGA-DX-AB2T-01 X 152835147 152835147 C T ATP2B3 Intron 0.23 TCGA-DX-AB2T-01 X 38422291 38422291 T A TSPAN7 Intron 0.60 TCGA-DX-AB2T-01 X 86890770 86890770 G A KLHL4 Silent p.V640V 0.09 TCGA-DX-AB2T-01 X 8764385 8764385 T C FAM9A Missense_Mutation p.I138V 0.17 tolerated_low_confidence(0.24) benign(0.274) TCGA-DX-AB2V-01 10 11984753 11984753 T C UPF2 Missense_Mutation p.I1097V 0.31 tolerated(0.57) possibly_damaging(0.768) TCGA-DX-AB2V-01 10 126686543 126686543 G A CTBP2 Silent p.L725L 0.26 TCGA-DX-AB2V-01 10 38241130 38241130 C T ZNF25 Silent p.G432G 0.41 TCGA-DX-AB2V-01 10 52573658 52573658 G T A1CF Missense_Mutation p.P436T 0.26 tolerated(0.26) benign(0.007) TCGA-DX-AB2V-01 10 54040573 54040573 C A PRKG1 Silent p.T476T 0.10 TCGA-DX-AB2V-01 10 90034752 90034752 C T RNLS Missense_Mutation p.S305N 0.12 tolerated_low_confidence(0.06) benign(0.001) TCGA-DX-AB2V-01 10 96748928 96748928 C T CYP2C9 3'UTR 0.29 TCGA-DX-AB2V-01 11 122774688 122774688 A T C11orf63 Missense_Mutation p.S134C 0.35 deleterious(0) possibly_damaging(0.849) TCGA-DX-AB2V-01 11 22283767 22283767 G A ANO5 Missense_Mutation p.V575I 0.20 tolerated(1) benign(0.144) TCGA-DX-AB2V-01 11 68660289 68660289 C T MRPL21 Intron 0.17 TCGA-DX-AB2V-01 12 104725408 104725408 G A TXNRD1 Missense_Mutation p.E547K 0.09 deleterious(0.04) benign(0.086) TCGA-DX-AB2V-01 12 124856967 124856967 G A NCOR2 Missense_Mutation p.T803I 0.19 unknown(0) TCGA-DX-AB2V-01 12 6131103 6131103 T C VWF Missense_Mutation p.T1213A 0.15 deleterious(0.05) possibly_damaging(0.636) TCGA-DX-AB2V-01 12 7966462 7966462 G A SLC2A14 3'UTR 0.12 TCGA-DX-AB2V-01 12 82752386 82752386 C G METTL25 Silent p.P14P 0.15 TCGA-DX-AB2V-01 12 83455574 83455574 G A TMTC2 Silent p.E765E 0.13 TCGA-DX-AB2V-01 12 98848980 98848980 C A SLC9A7P1 RNA 0.47 TCGA-DX-AB2V-01 13 88331213 88331213 C A SLITRK5 3'UTR 0.24 TCGA-DX-AB2V-01 14 33291068 33291068 C A AKAP6 Missense_Mutation p.A1350E 0.13 tolerated(1) benign(0.005) TCGA-DX-AB2V-01 14 63447935 63447935 C T KCNH5 Silent p.A199A 0.21 TCGA-DX-AB2V-01 15 23686793 23686793 G T GOLGA6L2 Missense_Mutation p.Q277K 0.47 benign(0.006) TCGA-DX-AB2V-01 15 34060884 34060884 G A RYR3 Missense_Mutation p.V2911I 0.27 possibly_damaging(0.762) TCGA-DX-AB2V-01 15 63615893 63615893 C T CA12 3'UTR 0.05 TCGA-DX-AB2V-01 15 79310205 79310205 G A RASGRF1 Silent p.I550I 0.16 TCGA-DX-AB2V-01 16 57832148 57832148 G A KIFC3 Missense_Mutation p.P3L 0.29 deleterious_low_confidence(0.01) benign(0.062) TCGA-DX-AB2V-01 16 72818193 72818193 G A ZFHX3 3'UTR 0.15 TCGA-DX-AB2V-01 17 20217434 20217434 C T SPECC1 3'UTR 0.26 TCGA-DX-AB2V-01 17 21731081 21731081 A G UBBP4 Missense_Mutation p.D128G 0.17 deleterious(0.03) benign(0.022) TCGA-DX-AB2V-01 17 31348283 31348285 ATA - ASIC2 In_Frame_Del p.Y465del 0.25 TCGA-DX-AB2V-01 17 33475325 33475325 C T UNC45B Missense_Mutation p.R15W 0.19 deleterious(0) possibly_damaging(0.512) TCGA-DX-AB2V-01 17 39383043 39383043 G T KRTAP9-2 Missense_Mutation p.S46I 0.22 tolerated(0.06) unknown(0) TCGA-DX-AB2V-01 17 44049253 44049253 C A MAPT Missense_Mutation p.D54E 0.20 deleterious(0) possibly_damaging(0.688) TCGA-DX-AB2V-01 17 49231730 49231733 AAGA - NME1 5'UTR 0.12 TCGA-DX-AB2V-01 17 72249971 72249971 C T TTYH2 Missense_Mutation p.T508M 0.08 deleterious(0.03) benign(0.097) TCGA-DX-AB2V-01 17 72860089 72860089 T C FDXR Missense_Mutation p.D411G 0.15 deleterious(0.02) possibly_damaging(0.676) TCGA-DX-AB2V-01 17 72860090 72860090 C T FDXR Missense_Mutation p.D411N 0.14 deleterious(0) benign(0.273) TCGA-DX-AB2V-01 17 73242653 73242653 G A GGA3 Silent p.A46A 0.07 TCGA-DX-AB2V-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.80 TCGA-DX-AB2V-01 18 117148 117148 C A ROCK1P1 RNA 0.15 TCGA-DX-AB2V-01 18 64172372 64172372 G A CDH19 Missense_Mutation p.R666W 0.29 deleterious(0) probably_damaging(1) TCGA-DX-AB2V-01 18 76753935 76753935 G A SALL3 Silent p.P648P 0.24 TCGA-DX-AB2V-01 19 13874106 13874106 C T CCDC130 3'UTR 0.16 TCGA-DX-AB2V-01 19 16034716 16034716 C T CYP4F11 Missense_Mutation p.R275H 0.06 deleterious(0.03) benign(0.224) TCGA-DX-AB2V-01 19 19655545 19655545 G A CILP2 Missense_Mutation p.V731M 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-DX-AB2V-01 19 32927362 32927362 C T DPY19L3 Silent p.G113G 0.17 TCGA-DX-AB2V-01 19 4961528 4961528 C T UHRF1 RNA 0.65 TCGA-DX-AB2V-01 19 56370522 56370522 T C NLRP4 Missense_Mutation p.V588A 0.12 tolerated(0.05) benign(0.299) TCGA-DX-AB2V-01 19 57326959 57326959 C A PEG3 Missense_Mutation p.V951L 0.38 deleterious(0.05) possibly_damaging(0.54) TCGA-DX-AB2V-01 19 57924999 57924999 G A ZNF17 Intron 0.12 TCGA-DX-AB2V-01 19 58549273 58549273 C T ZSCAN1 Silent p.D23D 0.08 TCGA-DX-AB2V-01 19 621507 621507 C T POLRMT Missense_Mutation p.V731M 0.14 deleterious(0) probably_damaging(0.986) TCGA-DX-AB2V-01 19 7711208 7711208 C T STXBP2 Missense_Mutation p.P477L 0.11 deleterious(0) possibly_damaging(0.517) TCGA-DX-AB2V-01 19 9066657 9066657 G T MUC16 Missense_Mutation p.T6930K 0.13 unknown(0) TCGA-DX-AB2V-01 1 151384868 151384868 C A POGZ Missense_Mutation p.K561N 0.52 deleterious(0.02) possibly_damaging(0.529) TCGA-DX-AB2V-01 1 158226589 158226589 C T CD1A Silent p.A206A 0.22 TCGA-DX-AB2V-01 1 161018648 161018648 T C ARHGAP30 Silent p.K721K 0.33 TCGA-DX-AB2V-01 1 161089680 161089680 G A NIT1 Missense_Mutation p.E177K 0.14 deleterious(0.02) probably_damaging(0.997) TCGA-DX-AB2V-01 1 176679192 176679192 A G PAPPA2 Silent p.V1177V 0.12 TCGA-DX-AB2V-01 1 203143602 203143602 G A MYBPH Missense_Mutation p.P155L 0.05 tolerated(0.08) benign(0.035) TCGA-DX-AB2V-01 1 75037896 75037896 C T C1orf173 Silent p.S1166S 0.11 TCGA-DX-AB2V-01 20 13830169 13830169 G A SEL1L2 Missense_Mutation p.P564S 0.11 tolerated_low_confidence(0.06) benign(0.022) TCGA-DX-AB2V-01 20 15866410 15866410 C T MACROD2 Silent p.D243D 0.29 TCGA-DX-AB2V-01 20 21492156 21492156 G A NKX2-2 3'UTR 0.16 TCGA-DX-AB2V-01 20 310786 310786 G C SOX12 3'UTR 0.12 TCGA-DX-AB2V-01 20 47707377 47707377 G A CSE1L Splice_Site p.X760_splice 0.18 TCGA-DX-AB2V-01 20 58470515 58470515 G A SYCP2 Missense_Mutation p.H548Y 0.17 tolerated(1) benign(0.002) TCGA-DX-AB2V-01 21 38884863 38884863 T A DYRK1A 3'UTR 0.57 TCGA-DX-AB2V-01 22 26736438 26736438 C T SEZ6L Silent p.Y684Y 0.21 TCGA-DX-AB2V-01 22 31503500 31503500 G A SELM 5'UTR 0.13 TCGA-DX-AB2V-01 2 1204841 1204841 G A SNTG2 Missense_Mutation p.R215H 0.22 deleterious(0.05) benign(0.04) TCGA-DX-AB2V-01 2 135470828 135470828 T A TMEM163 Silent p.A88A 0.09 TCGA-DX-AB2V-01 2 143790838 143790838 G A KYNU Missense_Mutation p.R330Q 0.48 tolerated(0.15) probably_damaging(1) TCGA-DX-AB2V-01 2 167133735 167133735 A G SCN9A Missense_Mutation p.F867L 0.23 deleterious(0) benign(0.057) TCGA-DX-AB2V-01 2 220497016 220497016 C T SLC4A3 Silent p.D358D 0.23 TCGA-DX-AB2V-01 3 102187922 102187922 C T ZPLD1 Silent p.V308V 0.16 TCGA-DX-AB2V-01 3 10369949 10369949 C T ATP2B2 3'UTR 0.39 TCGA-DX-AB2V-01 3 122459105 122459105 C T HSPBAP1 3'UTR 0.25 TCGA-DX-AB2V-01 3 176742058 176742058 G A TBL1XR1 3'UTR 0.14 TCGA-DX-AB2V-01 3 186974575 186974575 G - MASP1 Frame_Shift_Del p.K208Rfs*69 0.17 TCGA-DX-AB2V-01 3 33686773 33686773 C G CLASP2 Intron 0.18 TCGA-DX-AB2V-01 3 75679960 75679960 C T MIR1324 RNA 0.05 TCGA-DX-AB2V-01 3 87294950 87294950 G A CHMP2B Silent p.Q71Q 0.18 TCGA-DX-AB2V-01 4 37904119 37904119 G A TBC1D1 Missense_Mutation p.D135N 0.13 tolerated(0.37) possibly_damaging(0.773) TCGA-DX-AB2V-01 4 89660243 89660243 G A FAM13A Silent p.L834L 0.42 TCGA-DX-AB2V-01 5 126889663 126889663 C G PRRC1 3'UTR 0.14 TCGA-DX-AB2V-01 5 140223088 140223088 A C PCDHA8 Missense_Mutation p.T728P 0.17 tolerated_low_confidence(0.17) benign(0.01) TCGA-DX-AB2V-01 5 153078482 153078482 G A GRIA1 Missense_Mutation p.R444H 0.16 tolerated(0.06) probably_damaging(0.951) TCGA-DX-AB2V-01 5 159776711 159776711 G A C1QTNF2 Missense_Mutation p.R153C 0.13 deleterious(0.03) unknown(0) TCGA-DX-AB2V-01 5 24509886 24509886 C T CDH10 Missense_Mutation p.E349K 0.10 tolerated(0.13) probably_damaging(0.979) TCGA-DX-AB2V-01 5 36049323 36049323 C T UGT3A2 Missense_Mutation p.G171S 0.25 tolerated(0.22) benign(0.016) TCGA-DX-AB2V-01 5 54329635 54329635 G A GZMK Missense_Mutation p.A226T 0.30 deleterious(0) probably_damaging(0.967) TCGA-DX-AB2V-01 5 56777651 56777651 T G ACTBL2 Missense_Mutation p.Y295S 0.17 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-DX-AB2V-01 6 121544380 121544385 ACAATA - TBC1D32 Splice_Site p.X826_splice 0.15 TCGA-DX-AB2V-01 6 129380936 129380936 C T LAMA2 Silent p.H97H 0.21 TCGA-DX-AB2V-01 6 145157027 145157027 A G UTRN Silent p.E3259E 0.19 TCGA-DX-AB2V-01 6 31084477 31084477 A T CDSN Missense_Mutation p.S305R 0.20 deleterious_low_confidence(0) unknown(0) TCGA-DX-AB2V-01 6 32847349 32847349 C G PPP1R2P1 RNA 0.15 TCGA-DX-AB2V-01 6 44137260 44137260 C T CAPN11 Missense_Mutation p.R111W 0.69 deleterious(0) probably_damaging(1) TCGA-DX-AB2V-01 6 75893827 75893827 T A COL12A1 Missense_Mutation p.E344V 0.25 benign(0.44) TCGA-DX-AB2V-01 6 76024508 76024508 T C FILIP1 Missense_Mutation p.E347G 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-DX-AB2V-01 6 87971266 87971266 A G ZNF292 Missense_Mutation p.N2640S 0.04 tolerated(0.24) benign(0.014) TCGA-DX-AB2V-01 7 100028535 100028535 C T MEPCE Silent p.G298G 0.18 TCGA-DX-AB2V-01 7 100675057 100675057 A T MUC17 Missense_Mutation p.E120D 0.19 benign(0.002) TCGA-DX-AB2V-01 7 140301490 140301490 T A DENND2A Missense_Mutation p.K236N 0.14 tolerated(0.48) benign(0.287) TCGA-DX-AB2V-01 7 142206926 142206926 C A TRBV10-2 Missense_Mutation p.C12F 0.10 tolerated(0.08) benign(0.006) TCGA-DX-AB2V-01 7 150174480 150174480 T A GIMAP8 Missense_Mutation p.F537Y 0.12 tolerated(0.13) probably_damaging(0.98) TCGA-DX-AB2V-01 7 25191226 25191226 C A C7orf31 Missense_Mutation p.V225L 0.11 tolerated(0.28) benign(0.232) TCGA-DX-AB2V-01 7 47520718 47520718 G T TNS3 5'UTR 0.15 TCGA-DX-AB2V-01 7 47870882 47870882 C T PKD1L1 Missense_Mutation p.A2136T 0.06 tolerated(0.07) possibly_damaging(0.513) TCGA-DX-AB2V-01 7 48312581 48312581 C T ABCA13 Silent p.H1106H 0.13 TCGA-DX-AB2V-01 7 57529220 57529220 C G ZNF716 Silent p.L351L 0.34 TCGA-DX-AB2V-01 7 6203804 6203804 G A CYTH3 3'UTR 0.17 TCGA-DX-AB2V-01 7 66289015 66289015 G A GTF2IRD1P1 RNA 0.08 TCGA-DX-AB2V-01 7 86811526 86811526 G T DMTF1 Intron 0.14 TCGA-DX-AB2V-01 8 132957003 132957003 G A EFR3A Silent p.V33V 0.19 TCGA-DX-AB2V-01 8 132957010 132957010 G A EFR3A Missense_Mutation p.D36N 0.20 tolerated(1) benign(0.005) TCGA-DX-AB2V-01 8 132957051 132957051 G A EFR3A Silent p.E49E 0.19 TCGA-DX-AB2V-01 8 132957097 132957097 G A EFR3A Missense_Mutation p.D65N 0.15 deleterious(0) probably_damaging(0.991) TCGA-DX-AB2V-01 8 143566042 143566042 T A BAI1 Missense_Mutation p.F742Y 0.14 deleterious(0) benign(0.418) TCGA-DX-AB2V-01 8 25209283 25209283 C T DOCK5 Missense_Mutation p.R931W 0.11 deleterious(0.03) probably_damaging(0.952) TCGA-DX-AB2V-01 8 57075365 57075365 C T PLAG1 3'UTR 0.37 TCGA-DX-AB2V-01 8 86127289 86127289 T G C8orf59 Intron 0.37 TCGA-DX-AB2V-01 8 86195699 86195699 C G CA13 3'UTR 0.16 TCGA-DX-AB2V-01 9 101052813 101052813 C A GABBR2 3'UTR 0.27 TCGA-DX-AB2V-01 9 107298240 107298240 G T OR13C3 Silent p.I285I 0.15 TCGA-DX-AB2V-01 9 108127820 108127820 G A SLC44A1 Missense_Mutation p.R437H 0.23 tolerated(0.54) probably_damaging(0.93) TCGA-DX-AB2V-01 9 138390464 138390464 G A C9orf116 Silent p.Y63Y 0.16 TCGA-DX-AB2V-01 9 140058109 140058109 A G GRIN1 Missense_Mutation p.E832G 0.77 tolerated(0.16) possibly_damaging(0.555) TCGA-DX-AB2V-01 9 21481377 21481377 G A IFNE Missense_Mutation p.T106M 0.16 tolerated(0.57) benign(0.004) TCGA-DX-AB2V-01 9 95796862 95796862 G A FGD3 Missense_Mutation p.G609S 0.17 tolerated(1) benign(0.045) TCGA-DX-AB2V-01 X 13626473 13626473 C T EGFL6 Missense_Mutation p.T229M 0.15 tolerated(0.18) benign(0.099) TCGA-DX-AB2V-01 X 48771549 48771549 C A PIM2 Silent p.R265R 0.26 TCGA-DX-AB2V-01 X 63405323 63405323 C A AMER1 3'UTR 0.23 TCGA-DX-AB2V-01 X 73641840 73641840 T A SLC16A2 Missense_Mutation p.I123N 0.19 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2V-01 X 74649796 74649796 G A ZDHHC15 Missense_Mutation p.H157Y 0.21 deleterious(0) probably_damaging(1) TCGA-DX-AB2V-01 X 86890736 86890736 C A KLHL4 Missense_Mutation p.A629D 0.82 deleterious(0) probably_damaging(0.913) TCGA-DX-AB2W-01 10 11990442 11990442 C G UPF2 Missense_Mutation p.E1034Q 0.14 tolerated(0.25) benign(0.399) TCGA-DX-AB2W-01 10 128193333 128193333 G A C10orf90 Missense_Mutation p.R146C 0.54 deleterious(0) probably_damaging(0.982) TCGA-DX-AB2W-01 10 13167497 13167509 AAGTTAGAGCTAC - OPTN Frame_Shift_Del p.L361Wfs*22 0.21 TCGA-DX-AB2W-01 10 134563094 134563094 G T INPP5A Missense_Mutation p.R269L 0.36 deleterious(0.03) probably_damaging(0.913) TCGA-DX-AB2W-01 10 134787952 134787952 C A LINC01168 RNA 0.63 TCGA-DX-AB2W-01 10 24909075 24909075 A G ARHGAP21 Silent p.F583F 0.09 TCGA-DX-AB2W-01 10 30316575 30316575 C T KIAA1462 Silent p.Q834Q 0.08 TCGA-DX-AB2W-01 10 62648444 62648444 C T RHOBTB1 Missense_Mutation p.D328N 0.33 tolerated(0.13) benign(0.006) TCGA-DX-AB2W-01 11 10580737 10580737 G C LYVE1 Nonsense_Mutation p.S297* 0.15 TCGA-DX-AB2W-01 11 117161674 117161674 G A BACE1 Missense_Mutation p.S345L 0.45 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2W-01 11 1280258 1280258 G C MUC5B Missense_Mutation p.Q5560H 0.25 unknown(0) TCGA-DX-AB2W-01 11 12963514 12963514 A G TEAD1 3'UTR 0.22 TCGA-DX-AB2W-01 11 133714498 133714498 A G SPATA19 Missense_Mutation p.L58P 0.28 deleterious(0.02) benign(0.262) TCGA-DX-AB2W-01 11 3249728 3249728 G C MRGPRE Missense_Mutation p.T100R 0.20 tolerated(0.07) possibly_damaging(0.67) TCGA-DX-AB2W-01 11 47460330 47460330 C T RAPSN Silent p.K373K 0.19 TCGA-DX-AB2W-01 11 55761685 55761685 G T OR5F1 Silent p.T139T 0.19 TCGA-DX-AB2W-01 11 562471 562471 G A RASSF7 Missense_Mutation p.A173T 0.25 tolerated(0.42) benign(0.342) TCGA-DX-AB2W-01 11 61404548 61404548 G T RPLP0P2 RNA 0.20 TCGA-DX-AB2W-01 11 61908391 61908391 C T INCENP Missense_Mutation p.R490W 0.05 deleterious(0) unknown(0) TCGA-DX-AB2W-01 11 62038380 62038380 T G SCGB2A2 Missense_Mutation p.V28G 0.22 deleterious(0) possibly_damaging(0.548) TCGA-DX-AB2W-01 11 66472855 66472855 G A SPTBN2 Missense_Mutation p.A631V 0.23 tolerated(0.15) possibly_damaging(0.891) TCGA-DX-AB2W-01 11 75590941 75590941 C T UVRAG Missense_Mutation p.L97F 0.27 tolerated(0.2) possibly_damaging(0.651) TCGA-DX-AB2W-01 11 89924822 89924822 C T NAALAD2 Silent p.N710N 0.19 TCGA-DX-AB2W-01 11 89924884 89924884 C T NAALAD2 Missense_Mutation p.A731V 0.12 deleterious(0) probably_damaging(1) TCGA-DX-AB2W-01 12 116408418 116408418 A G MED13L Silent p.D2016D 0.20 TCGA-DX-AB2W-01 12 118582631 118582631 C G PEBP1 3'UTR 0.24 TCGA-DX-AB2W-01 12 122091053 122091053 C T MORN3 Missense_Mutation p.M192I 0.30 tolerated(0.76) benign(0) TCGA-DX-AB2W-01 12 129189821 129189821 C T TMEM132C Nonsense_Mutation p.R770* 0.16 TCGA-DX-AB2W-01 12 15699483 15699483 A T PTPRO Intron 0.16 TCGA-DX-AB2W-01 12 21349882 21349882 A T SLCO1B1 Missense_Mutation p.T244S 0.41 tolerated(1) benign(0.01) TCGA-DX-AB2W-01 12 50350776 50350776 C A AQP2 3'UTR 0.23 TCGA-DX-AB2W-01 12 55421831 55421831 A G NEUROD4 3'UTR 0.20 TCGA-DX-AB2W-01 12 57317653 57317653 T C SDR9C7 Silent p.L302L 0.09 TCGA-DX-AB2W-01 12 6085362 6085362 C A VWF Missense_Mutation p.C2451F 0.29 deleterious(0) probably_damaging(0.951) TCGA-DX-AB2W-01 13 32526746 32526746 G T EEF1DP3 RNA 0.30 TCGA-DX-AB2W-01 13 70713562 70713563 - T ATXN8OS 3'Flank 0.27 TCGA-DX-AB2W-01 13 80125212 80125212 G T NDFIP2 Missense_Mutation p.S323I 0.22 deleterious(0.02) probably_damaging(0.944) TCGA-DX-AB2W-01 14 19563586 19563586 T C POTEG Intron 0.25 TCGA-DX-AB2W-01 14 94521472 94521472 T C DDX24 Missense_Mutation p.N683S 0.35 tolerated(0.29) benign(0.003) TCGA-DX-AB2W-01 15 45047473 45047473 C A TRIM69 Missense_Mutation p.P128T 0.61 tolerated(0.6) benign(0.004) TCGA-DX-AB2W-01 15 55912283 55912283 C A PRTG Missense_Mutation p.G1127V 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-DX-AB2W-01 15 59911070 59911070 A G GCNT3 Silent p.E211E 0.14 TCGA-DX-AB2W-01 15 62273558 62273558 C G VPS13C Missense_Mutation p.D717H 0.06 deleterious(0) possibly_damaging(0.894) TCGA-DX-AB2W-01 15 62273582 62273582 C T VPS13C Missense_Mutation p.E709K 0.06 tolerated(0.81) benign(0.002) TCGA-DX-AB2W-01 15 62273609 62273609 C G VPS13C Missense_Mutation p.V700L 0.09 tolerated(0.22) benign(0.001) TCGA-DX-AB2W-01 15 65219154 65219154 G A ANKDD1A Missense_Mutation p.D176N 0.20 tolerated(0.32) benign(0.158) TCGA-DX-AB2W-01 15 69348979 69348979 G A NOX5 Silent p.K747K 0.07 TCGA-DX-AB2W-01 15 69548731 69548731 G A GLCE Missense_Mutation p.G196S 0.19 deleterious(0) probably_damaging(0.985) TCGA-DX-AB2W-01 16 10626829 10626829 G T EMP2 Missense_Mutation p.A146E 0.31 deleterious(0) probably_damaging(0.988) TCGA-DX-AB2W-01 16 15758619 15758619 C G NDE1 5'UTR 0.20 TCGA-DX-AB2W-01 16 2505464 2505464 G T CCNF Missense_Mutation p.S595I 0.23 deleterious(0.01) benign(0.365) TCGA-DX-AB2W-01 16 28986111 28986111 T G SPNS1 5'UTR 0.47 TCGA-DX-AB2W-01 16 58550109 58550109 G T SETD6 Missense_Mutation p.R113L 0.44 tolerated(0.09) benign(0.078) TCGA-DX-AB2W-01 16 67315959 67315959 C G PLEKHG4 Silent p.L351L 0.59 TCGA-DX-AB2W-01 16 68961693 68961693 C T TANGO6 Missense_Mutation p.H784Y 0.69 tolerated(0.33) benign(0.001) TCGA-DX-AB2W-01 16 77822609 77822609 G A VAT1L Silent p.E10E 0.54 TCGA-DX-AB2W-01 16 816491 816491 G C MSLN Splice_Site p.X410_splice 0.39 TCGA-DX-AB2W-01 16 88780567 88780567 C A CTU2 Missense_Mutation p.H343Q 0.57 tolerated(0.4) benign(0.241) TCGA-DX-AB2W-01 17 16340225 16340225 C T TRPV2 3'UTR 0.11 TCGA-DX-AB2W-01 17 17772860 17772860 T A TOM1L2 Intron 0.72 TCGA-DX-AB2W-01 17 3447913 3447913 C T TRPV3 Missense_Mutation p.D91N 0.17 tolerated(0.06) possibly_damaging(0.623) TCGA-DX-AB2W-01 17 40011503 40011503 C T KLHL11 Missense_Mutation p.V206M 0.23 deleterious(0.04) possibly_damaging(0.564) TCGA-DX-AB2W-01 17 40695663 40695663 G C NAGLU Missense_Mutation p.A547P 0.14 deleterious(0.04) probably_damaging(0.932) TCGA-DX-AB2W-01 17 45918224 45918224 G T SCRN2 Intron 0.14 TCGA-DX-AB2W-01 17 55016500 55016500 T C COIL Missense_Mutation p.K555E 0.36 tolerated(0.22) benign(0.075) TCGA-DX-AB2W-01 17 62026027 62026027 G T SCN4A Missense_Mutation p.H1030N 0.36 deleterious(0.02) benign(0.232) TCGA-DX-AB2W-01 17 67522761 67522761 T G MAP2K6 Missense_Mutation p.F264L 0.29 deleterious(0) probably_damaging(0.972) TCGA-DX-AB2W-01 17 72341076 72341076 C A KIF19 Silent p.G253G 0.16 TCGA-DX-AB2W-01 17 72352937 72352937 G C BTBD17 Missense_Mutation p.H432Q 0.36 deleterious(0) probably_damaging(0.988) TCGA-DX-AB2W-01 17 72916165 72916165 C A USH1G Missense_Mutation p.V256L 0.29 tolerated(0.68) benign(0.007) TCGA-DX-AB2W-01 17 7578535 7578535 T C TP53 Missense_Mutation p.K132R 0.56 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2W-01 17 7611316 7611316 G C EFNB3 Missense_Mutation p.G55R 0.09 deleterious(0) probably_damaging(1) TCGA-DX-AB2W-01 18 47797767 47797767 T C MBD1 Intron 0.17 TCGA-DX-AB2W-01 18 55024254 55024254 T A ST8SIA3 Missense_Mutation p.F138Y 0.54 benign(0.09) TCGA-DX-AB2W-01 19 15271749 15271749 G T NOTCH3 Silent p.P2230P 0.21 TCGA-DX-AB2W-01 19 37239096 37239096 C G ZNF850 Missense_Mutation p.G949A 0.24 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2W-01 19 43092964 43092964 C T CEACAM8 Silent p.R310R 0.24 TCGA-DX-AB2W-01 19 43382272 43382272 G T PSG1 Missense_Mutation p.L75I 0.23 tolerated(0.42) benign(0.005) TCGA-DX-AB2W-01 19 45909846 45909846 G A CD3EAP 5'UTR 0.27 TCGA-DX-AB2W-01 19 49869110 49869110 C G DKKL1 Missense_Mutation p.P129A 0.09 deleterious_low_confidence(0.03) benign(0.16) TCGA-DX-AB2W-01 19 55420623 55420623 C A NCR1 Silent p.T125T 0.21 TCGA-DX-AB2W-01 19 6468271 6468271 C T DENND1C Missense_Mutation p.G589R 0.11 deleterious(0.04) benign(0.093) TCGA-DX-AB2W-01 1 110555599 110555599 A G AHCYL1 Silent p.V186V 0.15 TCGA-DX-AB2W-01 1 114682308 114682308 C T SYT6 Missense_Mutation p.M62I 0.39 tolerated(0.21) benign(0.065) TCGA-DX-AB2W-01 1 11854057 11854057 G C MTHFR Missense_Mutation p.I479M 0.32 deleterious(0.03) possibly_damaging(0.522) TCGA-DX-AB2W-01 1 1277071 1277071 G A DVL1 Missense_Mutation p.S194L 0.53 deleterious(0.02) possibly_damaging(0.776) TCGA-DX-AB2W-01 1 12835818 12835818 T G PRAMEF12 Silent p.G140G 0.42 TCGA-DX-AB2W-01 1 13839848 13839848 C A LRRC38 Missense_Mutation p.D81Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2W-01 1 162782284 162782284 G C HSD17B7 3'UTR 0.22 TCGA-DX-AB2W-01 1 169529886 169529886 G A F5 Silent p.D164D 0.58 TCGA-DX-AB2W-01 1 17413052 17413052 G T PADI2 Silent p.V266V 0.20 TCGA-DX-AB2W-01 1 20442883 20442883 G C PLA2G2D Missense_Mutation p.P43R 0.17 tolerated(0.35) possibly_damaging(0.609) TCGA-DX-AB2W-01 1 27632840 27632840 G C WDTC1 Missense_Mutation p.S666T 0.29 tolerated(0.31) benign(0.007) TCGA-DX-AB2W-01 1 27687424 27687424 C A MAP3K6 Silent p.G636G 0.26 TCGA-DX-AB2W-01 1 36945109 36945109 G C CSF3R 5'UTR 0.14 TCGA-DX-AB2W-01 1 53986384 53986384 T C GLIS1 Missense_Mutation p.Q375R 0.37 deleterious(0.03) benign(0.26) TCGA-DX-AB2W-01 1 68153611 68153611 G A GADD45A 3'UTR 0.24 TCGA-DX-AB2W-01 20 13866984 13866984 T A SEL1L2 Missense_Mutation p.I284L 0.21 tolerated(1) benign(0.003) TCGA-DX-AB2W-01 20 139679 139679 T C DEFB127 3'UTR 0.69 TCGA-DX-AB2W-01 20 25848664 25848664 T A FAM182B 5'Flank 0.13 TCGA-DX-AB2W-01 20 33582077 33582077 C G MYH7B Missense_Mutation p.A900G 0.17 benign(0.228) TCGA-DX-AB2W-01 20 39991664 39991664 C T EMILIN3 Missense_Mutation p.R182Q 0.13 deleterious(0.01) benign(0.16) TCGA-DX-AB2W-01 20 43836660 43836660 C T SEMG1 Missense_Mutation p.A241V 0.31 tolerated(0.11) probably_damaging(0.998) TCGA-DX-AB2W-01 20 46282996 46282996 A T NCOA3 3'Flank 0.05 TCGA-DX-AB2W-01 20 60508134 60508134 C A CDH4 Silent p.R777R 0.15 TCGA-DX-AB2W-01 21 38118209 38118209 G T SIM2 Intron 0.25 TCGA-DX-AB2W-01 22 23404056 23404056 T C RTDR1 Missense_Mutation p.K241E 0.38 tolerated(0.51) benign(0.268) TCGA-DX-AB2W-01 22 36681262 36681262 C G MYH9 Missense_Mutation p.E1796D 0.23 benign(0.232) TCGA-DX-AB2W-01 2 102818149 102818149 T A IL1RL2 Missense_Mutation p.V208D 0.31 deleterious(0) probably_damaging(0.942) TCGA-DX-AB2W-01 2 111435615 111435615 A T BUB1 5'UTR 0.33 TCGA-DX-AB2W-01 2 136567385 136567385 C A LCT Missense_Mutation p.K844N 0.10 tolerated(0.75) benign(0.02) TCGA-DX-AB2W-01 2 160261574 160261574 T G BAZ2B Missense_Mutation p.Q910P 0.25 probably_damaging(0.995) TCGA-DX-AB2W-01 2 191848465 191848465 G A STAT1 Missense_Mutation p.T450M 0.35 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2W-01 2 210791624 210791624 C G UNC80 Missense_Mutation p.A1841G 0.22 possibly_damaging(0.578) TCGA-DX-AB2W-01 2 228882458 228882458 A C SPHKAP Missense_Mutation p.F1038V 0.15 deleterious(0) probably_damaging(0.996) TCGA-DX-AB2W-01 2 48034398 48034440 TTTTGAAGAGACTTTCTAAAGTGTACTTAAAACATAGTAGTTT - FBXO11 3'UTR 0.19 TCGA-DX-AB2W-01 2 67630960 67630960 T G ETAA1 Missense_Mutation p.D382E 0.17 tolerated(0.13) benign(0.117) TCGA-DX-AB2W-01 2 85046471 85046471 A T DNAH6 Missense_Mutation p.K4139M 0.19 tolerated(0.08) possibly_damaging(0.778) TCGA-DX-AB2W-01 3 124732673 124732673 A C HEG1 Missense_Mutation p.S584A 0.18 tolerated(0.1) benign(0.134) TCGA-DX-AB2W-01 3 125313565 125313565 G T OSBPL11 Missense_Mutation p.T27N 0.21 tolerated_low_confidence(0.18) benign(0.007) TCGA-DX-AB2W-01 3 131300488 131300488 G T CPNE4 Missense_Mutation p.P268T 0.27 deleterious(0.01) benign(0.115) TCGA-DX-AB2W-01 3 131300489 131300489 A T CPNE4 Missense_Mutation p.N267K 0.26 deleterious(0) probably_damaging(0.986) TCGA-DX-AB2W-01 3 155198794 155198794 T C PLCH1 Missense_Mutation p.D1682G 0.57 tolerated_low_confidence(0.06) benign(0.371) TCGA-DX-AB2W-01 3 170201202 170201202 G T SLC7A14 Missense_Mutation p.A339D 0.20 deleterious(0) probably_damaging(0.962) TCGA-DX-AB2W-01 3 183211909 183211909 G T KLHL6 Missense_Mutation p.N436K 0.14 tolerated(0.27) benign(0.416) TCGA-DX-AB2W-01 3 195609097 195609097 C A TNK2 Nonsense_Mutation p.E301* 0.17 TCGA-DX-AB2W-01 3 38104286 38104286 A T DLEC1 Missense_Mutation p.E363V 0.40 deleterious(0.04) benign(0.012) TCGA-DX-AB2W-01 3 42774443 42774443 G T CCDC13 Missense_Mutation p.H511N 0.17 deleterious(0) probably_damaging(0.97) TCGA-DX-AB2W-01 3 49064019 49064019 G C IMPDH2 Missense_Mutation p.I281M 0.53 tolerated(0.23) benign(0.062) TCGA-DX-AB2W-01 3 52535687 52535687 C A STAB1 Silent p.S83S 0.55 TCGA-DX-AB2W-01 3 52938806 52938806 A C SFMBT1 3'UTR 0.16 TCGA-DX-AB2W-01 3 97868995 97868995 G T OR5H14 Missense_Mutation p.A256S 0.39 deleterious(0) benign(0.03) TCGA-DX-AB2W-01 3 9944676 9944676 C G IL17RE Silent p.L20L 0.51 TCGA-DX-AB2W-01 4 13588085 13588096 CATCTGGATTAT - BOD1L1 In_Frame_Del p.D2786_D2789del 0.24 TCGA-DX-AB2W-01 4 146055788 146055788 T A OTUD4 3'UTR 0.50 TCGA-DX-AB2W-01 4 56837458 56837458 A T CEP135 Missense_Mutation p.E378V 0.04 deleterious(0.03) probably_damaging(0.988) TCGA-DX-AB2W-01 4 69431379 69431379 A T UGT2B17 Missense_Mutation p.Y262N 0.58 deleterious(0.04) benign(0.409) TCGA-DX-AB2W-01 4 77700031 77700031 C A SHROOM3 Missense_Mutation p.L1898M 0.32 deleterious(0) probably_damaging(0.993) TCGA-DX-AB2W-01 4 84255898 84255898 A G HPSE Missense_Mutation p.L13P 0.38 tolerated_low_confidence(0.1) unknown(0) TCGA-DX-AB2W-01 5 118583861 118583861 C G DMXL1 3'UTR 0.41 TCGA-DX-AB2W-01 5 156757766 156757766 C T CYFIP2 Missense_Mutation p.R699C 0.26 deleterious(0) possibly_damaging(0.893) TCGA-DX-AB2W-01 5 167642246 167642246 G A TENM2 Silent p.K1349K 0.38 TCGA-DX-AB2W-01 5 178139541 178139541 G A ZNF354A Silent p.A446A 0.11 TCGA-DX-AB2W-01 5 180166694 180166694 C A OR2Y1 Missense_Mutation p.R122L 0.44 deleterious(0) possibly_damaging(0.907) TCGA-DX-AB2W-01 6 137018523 137018523 T A MAP3K5 Missense_Mutation p.Q270L 0.22 tolerated(0.07) possibly_damaging(0.64) TCGA-DX-AB2W-01 6 31679762 31679762 C T LY6G6E 3'Flank 0.62 TCGA-DX-AB2W-01 6 33170365 33170365 A G SLC39A7 Silent p.S276S 0.18 TCGA-DX-AB2W-01 6 33267953 33267959 ACCATCT C TAPBP 3'Flank 0.57 TCGA-DX-AB2W-01 6 73904739 73904739 G C KCNQ5 Missense_Mutation p.D820H 0.24 tolerated_low_confidence(0.11) benign(0.037) TCGA-DX-AB2W-01 6 88173930 88173930 G T C6ORF165 Missense_Mutation p.V611F 0.29 deleterious(0.01) possibly_damaging(0.499) TCGA-DX-AB2W-01 7 100320681 100320681 C A EPO Missense_Mutation p.F169L 0.18 tolerated(0.22) possibly_damaging(0.742) TCGA-DX-AB2W-01 7 100350523 100350523 A G ZAN Missense_Mutation p.E932G 0.38 unknown(0) TCGA-DX-AB2W-01 7 11485924 11485924 T A THSD7A Missense_Mutation p.K943I 0.18 deleterious(0.01) benign(0.197) TCGA-DX-AB2W-01 7 122789498 122789498 C A SLC13A1 Intron 0.19 TCGA-DX-AB2W-01 7 1273220 1273220 C G UNCX Silent p.T113T 0.13 TCGA-DX-AB2W-01 7 138566128 138566134 AATAACC G KIAA1549 Splice_Site p.X1410_splice 0.23 TCGA-DX-AB2W-01 7 14188519 14188519 A T DGKB 3'UTR 0.18 TCGA-DX-AB2W-01 7 14216278 14216278 C T DGKB Intron 0.56 TCGA-DX-AB2W-01 7 150068731 150068731 A G REPIN1 Missense_Mutation p.H191R 0.15 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2W-01 7 20795117 20795117 C G ABCB5 Missense_Mutation p.S1215C 0.18 deleterious(0) probably_damaging(0.992) TCGA-DX-AB2W-01 7 31815286 31815286 G A PDE1C Missense_Mutation p.T711M 0.23 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-DX-AB2W-01 7 33136123 33136123 C T RP9 Missense_Mutation p.R150Q 0.39 tolerated_low_confidence(0.1) benign(0.002) TCGA-DX-AB2W-01 7 65425789 65425789 G C GUSB 3'UTR 0.22 TCGA-DX-AB2W-01 7 91694631 91694631 C T AKAP9 Nonsense_Mutation p.Q2022* 0.47 TCGA-DX-AB2W-01 7 98638040 98638040 G C SMURF1 Missense_Mutation p.S530C 0.05 deleterious(0.03) possibly_damaging(0.472) TCGA-DX-AB2W-01 8 104709430 104709430 C G RIMS2 Missense_Mutation p.T98R 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-DX-AB2W-01 8 11223281 11223281 A T C8orf12 5'Flank 0.33 TCGA-DX-AB2W-01 8 120756584 120756584 T C TAF2 Missense_Mutation p.D1053G 0.13 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-DX-AB2W-01 8 124696849 124696849 C T ANXA13 Splice_Site p.X318_splice 0.32 TCGA-DX-AB2W-01 8 17503194 17503194 G A MTUS1 3'UTR 0.33 TCGA-DX-AB2W-01 8 22487957 22487957 T G BIN3 Missense_Mutation p.K99Q 0.35 tolerated(0.3) possibly_damaging(0.497) TCGA-DX-AB2W-01 8 26227825 26227825 G C PPP2R2A Missense_Mutation p.D424H 0.22 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2W-01 8 2800029 2800029 A C CSMD1 Missense_Mutation p.I3500M 0.30 probably_damaging(0.968) TCGA-DX-AB2W-01 8 28047428 28047428 C T ELP3 3'UTR 0.31 TCGA-DX-AB2W-01 8 57876069 57876069 T C IMPAD1 3'UTR 0.37 TCGA-DX-AB2W-01 8 61504448 61504448 G C RAB2A Missense_Mutation p.E132Q 0.12 deleterious(0.04) benign(0.402) TCGA-DX-AB2W-01 8 62538820 62538820 C G ASPH Intron 0.18 TCGA-DX-AB2W-01 8 82391090 82391090 G A FABP4 3'UTR 0.57 TCGA-DX-AB2W-01 8 89052289 89052289 G A MMP16 3'UTR 0.24 TCGA-DX-AB2W-01 9 112694185 112694206 ATTCCCTGTTCTCTGCTACCAG - PALM2-AKAP2 Splice_Site p.X132_splice 0.12 TCGA-DX-AB2W-01 9 119382716 119382716 T A ASTN2 Nonsense_Mutation p.K976* 0.19 TCGA-DX-AB2W-01 9 126133185 126133185 G T CRB2 Missense_Mutation p.G618V 0.41 deleterious(0) probably_damaging(0.953) TCGA-DX-AB2W-01 9 139616579 139616579 G A FAM69B Silent p.V103V 0.29 TCGA-DX-AB2W-01 9 141000214 141000214 C A CACNA1B Missense_Mutation p.L1795M 0.41 deleterious(0.01) possibly_damaging(0.853) TCGA-DX-AB2W-01 9 21239675 21239675 G A IFNA14 Missense_Mutation p.T87I 0.42 tolerated(0.99) benign(0.027) TCGA-DX-AB2W-01 9 21974782 21974782 C T CDKN2A Nonsense_Mutation p.W15* 0.40 TCGA-DX-AB2W-01 9 32632751 32632751 C A TAF1L Missense_Mutation p.D943Y 0.46 deleterious(0) possibly_damaging(0.701) TCGA-DX-AB2W-01 9 34835569 34835569 G T FAM205B RNA 0.19 TCGA-DX-AB2W-01 9 713042 713042 C T KANK1 Missense_Mutation p.S759L 0.55 tolerated(0.19) benign(0.002) TCGA-DX-AB2W-01 9 85905553 85905553 G A FRMD3 Missense_Mutation p.P387L 0.25 tolerated(0.12) possibly_damaging(0.563) TCGA-DX-AB2W-01 9 97869347 97869347 C A FANCC Splice_Site p.X511_splice 0.17 TCGA-DX-AB2W-01 9 97869348 97869348 C A FANCC Silent p.L511L 0.16 TCGA-DX-AB2W-01 X 107976496 107976496 G T IRS4 Missense_Mutation p.P1027T 0.36 deleterious(0.03) unknown(0) TCGA-DX-AB2W-01 X 113965856 113965856 A T HTR2C Silent p.I63I 0.40 TCGA-DX-AB2W-01 X 153663637 153663637 G C ATP6AP1 Missense_Mutation p.R330P 0.26 deleterious(0.01) possibly_damaging(0.814) TCGA-DX-AB2W-01 X 215829 215829 G A PLCXD1 Missense_Mutation p.E267K 0.24 tolerated(0.76) benign(0.004) TCGA-DX-AB2W-01 X 49065762 49065762 C G CACNA1F Missense_Mutation p.G1649A 0.42 tolerated(0.9) benign(0) TCGA-DX-AB2W-01 X 49107859 49107859 A G FOXP3 Missense_Mutation p.L411P 0.47 tolerated(0.1) possibly_damaging(0.776) TCGA-DX-AB2W-01 X 76814269 76814272 ATTA - ATRX Frame_Shift_Del p.N2125Wfs*2 0.44 TCGA-DX-AB2X-01 10 103558659 103558659 T C MGEA5 Silent p.Q583Q 0.54 TCGA-DX-AB2X-01 10 3143147 3143147 C A PFKP Intron 0.09 TCGA-DX-AB2X-01 10 43615162 43615162 C A RET Nonsense_Mutation p.S859* 0.35 TCGA-DX-AB2X-01 11 45924502 45924502 G T MAPK8IP1 Missense_Mutation p.S395I 0.15 deleterious(0) probably_damaging(0.997) TCGA-DX-AB2X-01 11 5444355 5444355 C T OR51Q1 Missense_Mutation p.L309F 0.31 tolerated(0.52) benign(0.025) TCGA-DX-AB2X-01 11 60183891 60183891 A G MS4A14 Missense_Mutation p.R517G 0.64 deleterious(0.01) possibly_damaging(0.802) TCGA-DX-AB2X-01 12 104396990 104396990 G T GLT8D2 Silent p.I69I 0.82 TCGA-DX-AB2X-01 12 18491389 18491390 - A PIK3C2G Frame_Shift_Ins p.I437Nfs*19 0.14 TCGA-DX-AB2X-01 12 45567451 45567451 A C PLEKHA8P1 RNA 0.06 TCGA-DX-AB2X-01 12 55820114 55820114 T C OR6C76 Missense_Mutation p.F26S 0.85 deleterious_low_confidence(0.03) benign(0.057) TCGA-DX-AB2X-01 12 6438751 6438751 G T TNFRSF1A Missense_Mutation p.N365K 0.20 tolerated(0.08) benign(0.272) TCGA-DX-AB2X-01 12 68720787 68720787 G T MDM1 Missense_Mutation p.P50T 0.15 deleterious(0) probably_damaging(1) TCGA-DX-AB2X-01 13 50205562 50205562 G A ARL11 3'UTR 0.40 TCGA-DX-AB2X-01 14 21820072 21820072 A C SUPT16H 3'UTR 0.71 TCGA-DX-AB2X-01 14 39790147 39790147 G C CTAGE5 Missense_Mutation p.G525A 0.81 deleterious(0.02) benign(0.299) TCGA-DX-AB2X-01 15 43820411 43820411 T A MAP1A Missense_Mutation p.L2247Q 0.34 probably_damaging(0.999) TCGA-DX-AB2X-01 15 89381937 89381937 G A ACAN Silent p.P38P 0.19 TCGA-DX-AB2X-01 16 28550301 28550301 G A NUPR1 5'UTR 0.36 TCGA-DX-AB2X-01 16 80719022 80719022 T C CDYL2 Missense_Mutation p.E10G 0.70 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2X-01 17 29664813 29664854 TATTCAGAGTATCCCCTTTTTTAGGCATGCATGAGAGATATT - NF1 Splice_Site p.X2215_splice 0.68 TCGA-DX-AB2X-01 17 33884275 33884275 T - SLFN14 Frame_Shift_Del p.E270Kfs*6 0.33 TCGA-DX-AB2X-01 17 68172670 68172670 G A KCNJ2 3'UTR 0.50 TCGA-DX-AB2X-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.85 tolerated(0.11) benign(0.308) TCGA-DX-AB2X-01 17 76047369 76047369 A G TNRC6C Silent p.V742V 0.46 TCGA-DX-AB2X-01 18 44139448 44139448 T C LOXHD1 5'Flank 0.69 TCGA-DX-AB2X-01 19 11797000 11797000 G C ZNF833P RNA 0.77 TCGA-DX-AB2X-01 19 17036138 17036138 G A CPAMD8 Missense_Mutation p.R1186W 0.64 deleterious(0.02) benign(0.099) TCGA-DX-AB2X-01 19 19367217 19367217 C A HAPLN4 3'UTR 0.82 TCGA-DX-AB2X-01 19 46543441 46543441 A G IGFL4 Missense_Mutation p.S102P 0.23 deleterious(0) possibly_damaging(0.8) TCGA-DX-AB2X-01 1 13743010 13743010 G C PRAMEF20 Missense_Mutation p.G67R 0.25 tolerated(0.06) benign(0.019) TCGA-DX-AB2X-01 1 248039664 248039664 G T TRIM58 Missense_Mutation p.R445L 0.81 deleterious(0.01) probably_damaging(0.998) TCGA-DX-AB2X-01 1 3425216 3425216 C T MEGF6 Silent p.L522L 0.81 TCGA-DX-AB2X-01 1 93691986 93691986 T G CCDC18 Missense_Mutation p.L811V 0.76 deleterious(0.01) possibly_damaging(0.485) TCGA-DX-AB2X-01 21 45550682 45550682 C T PWP2 3'UTR 0.12 TCGA-DX-AB2X-01 2 177055517 177055517 T A HOXD1 3'UTR 0.21 TCGA-DX-AB2X-01 2 18112238 18112238 C G KCNS3 5'UTR 0.32 TCGA-DX-AB2X-01 2 185803515 185803515 T A ZNF804A Missense_Mutation p.F1131Y 0.22 deleterious(0) benign(0.188) TCGA-DX-AB2X-01 2 242054559 242054559 G A PASK Nonsense_Mutation p.Q1078* 0.36 TCGA-DX-AB2X-01 2 242756292 242756292 G A NEU4 Silent p.S148S 0.23 TCGA-DX-AB2X-01 3 126070692 126070692 G A KLF15 Silent p.C358C 0.11 TCGA-DX-AB2X-01 3 133467272 133467272 C T TF Silent p.V20V 0.72 TCGA-DX-AB2X-01 3 186794805 186794805 G T ST6GAL1 3'UTR 0.33 TCGA-DX-AB2X-01 3 195510015 195510015 A G MUC4 Silent p.G2812G 0.29 TCGA-DX-AB2X-01 3 69070658 69070658 T A TMF1 3'UTR 0.15 TCGA-DX-AB2X-01 3 86117404 86117404 A T CADM2 3'Flank 0.05 TCGA-DX-AB2X-01 4 114276523 114276523 C A ANK2 Nonsense_Mutation p.S2250* 0.09 TCGA-DX-AB2X-01 6 31675750 31675750 G C LY6G6F Missense_Mutation p.G162A 0.36 deleterious(0.03) probably_damaging(0.91) TCGA-DX-AB2X-01 6 31708370 31708370 G T MSH5 Nonsense_Mutation p.E43* 0.15 TCGA-DX-AB2X-01 7 107330649 107330649 G A SLC26A4 Silent p.T410T 0.48 TCGA-DX-AB2X-01 7 136912373 136912373 C A PTN 3'UTR 0.16 TCGA-DX-AB2X-01 7 22478046 22478046 G T STEAP1B 3'UTR 0.19 TCGA-DX-AB2X-01 7 73112209 73112209 G A WBSCR22 Missense_Mutation p.R297H 0.25 tolerated(0.16) benign(0.025) TCGA-DX-AB2X-01 7 98633223 98633223 C A SMURF1 Silent p.T668T 0.74 TCGA-DX-AB2X-01 8 54141732 54141732 G T OPRK1 3'UTR 0.35 TCGA-DX-AB2X-01 8 70745290 70745290 G A SLCO5A1 5'UTR 0.62 TCGA-DX-AB2X-01 8 72975032 72975032 A T TRPA1 Splice_Site p.X269_splice 0.26 TCGA-DX-AB2X-01 8 77767256 77767256 A G ZFHX4 Missense_Mutation p.N2700S 0.30 probably_damaging(0.979) TCGA-DX-AB2X-01 9 116026526 116026526 G A SLC31A1 3'UTR 0.25 TCGA-DX-AB2X-01 9 135267466 135267466 T G TTF1 Missense_Mutation p.S662R 0.34 deleterious(0.02) possibly_damaging(0.472) TCGA-DX-AB2X-01 9 137330534 137330534 G C RXRA 3'Flank 0.55 TCGA-DX-AB2X-01 9 138903668 138903668 G A NACC2 Silent p.A486A 0.43 TCGA-DX-AB2X-01 X 14547512 14547513 - T GLRA2 5'Flank 0.43 TCGA-DX-AB2X-01 X 153906237 153906237 C T GAB3 3'Flank 0.29 TCGA-DX-AB2X-01 X 35937998 35937998 C A CXorf22 Missense_Mutation p.P28T 0.54 tolerated_low_confidence(0.05) benign(0.016) TCGA-DX-AB2X-01 X 40440240 40440240 T G ATP6AP2 5'UTR 0.35 TCGA-DX-AB2X-01 X 40511075 40511075 G A MED14 Missense_Mutation p.P1450S 0.26 tolerated_low_confidence(0.19) benign(0.042) TCGA-DX-AB2X-01 X 54950979 54950979 A G TRO Silent p.L444L 0.50 TCGA-DX-AB2X-01 X 601772 601772 C T SHOX Nonsense_Mutation p.R195* 0.35 TCGA-DX-AB2X-01 X 70469941 70469941 G A ZMYM3 Missense_Mutation p.P396S 0.47 tolerated(0.13) benign(0.063) TCGA-DX-AB2X-01 X 76849184 76849184 T A ATRX Missense_Mutation p.E2031V 0.40 benign(0.27) TCGA-DX-AB2Z-01 10 129903472 129903472 G C MKI67 Missense_Mutation p.T2211R 0.14 tolerated(0.17) benign(0.002) TCGA-DX-AB2Z-01 10 95719841 95719841 T C PIPSL RNA 0.08 TCGA-DX-AB2Z-01 10 98412517 98412517 G T PIK3AP1 Missense_Mutation p.S217Y 0.18 tolerated(0.45) benign(0.031) TCGA-DX-AB2Z-01 11 4661220 4661220 G A OR51D1 Missense_Mutation p.R67Q 0.26 deleterious(0.01) benign(0.02) TCGA-DX-AB2Z-01 11 65425869 65425869 G A RELA Missense_Mutation p.P256S 0.19 deleterious(0.03) possibly_damaging(0.467) TCGA-DX-AB2Z-01 12 116413410 116413410 G C MED13L Missense_Mutation p.S1833C 0.16 deleterious(0) probably_damaging(0.995) TCGA-DX-AB2Z-01 12 117583778 117583778 A G FBXO21 3'UTR 0.11 TCGA-DX-AB2Z-01 12 22610069 22610069 C T C2CD5 Missense_Mutation p.V854M 0.23 tolerated(0.21) benign(0.001) TCGA-DX-AB2Z-01 12 2786965 2786965 G A CACNA1C Missense_Mutation p.A1723T 0.24 tolerated(0.44) benign(0.032) TCGA-DX-AB2Z-01 12 55422930 55422930 A T NEUROD4 3'UTR 0.17 TCGA-DX-AB2Z-01 12 66357507 66357507 C T HMGA2 3'UTR 0.15 TCGA-DX-AB2Z-01 13 31035081 31035081 C G HMGB1 3'UTR 0.10 TCGA-DX-AB2Z-01 14 101448360 101448360 C T SNORD114-21 RNA 0.27 TCGA-DX-AB2Z-01 14 20215944 20215944 G A OR4Q3 Missense_Mutation p.A120T 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-DX-AB2Z-01 14 24410284 24410284 G A DHRS4-AS1 3'Flank 0.07 TCGA-DX-AB2Z-01 14 74726352 74726352 C A VSX2 Nonsense_Mutation p.C209* 0.07 TCGA-DX-AB2Z-01 15 100801734 100801734 G A ADAMTS17 Silent p.P327P 0.06 TCGA-DX-AB2Z-01 15 73044752 73044752 C A ADPGK Missense_Mutation p.R474L 0.10 deleterious(0) possibly_damaging(0.783) TCGA-DX-AB2Z-01 15 75982625 75982625 G A CSPG4 Missense_Mutation p.R261W 0.08 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Z-01 16 1364372 1364372 A G UBE2I Missense_Mutation p.K49E 0.15 tolerated(0.55) benign(0.009) TCGA-DX-AB2Z-01 16 29816167 29816167 G C KIF22 Missense_Mutation p.E570D 0.10 tolerated(0.39) benign(0.05) TCGA-DX-AB2Z-01 16 29816457 29816457 G A KIF22 Missense_Mutation p.E638K 0.10 tolerated(0.15) benign(0.02) TCGA-DX-AB2Z-01 16 81175023 81175023 G A PKD1L2 RNA 0.12 TCGA-DX-AB2Z-01 17 33477089 33477089 C T UNC45B Silent p.D76D 0.23 TCGA-DX-AB2Z-01 17 46876980 46876980 G A TTLL6 Silent p.L252L 0.28 TCGA-DX-AB2Z-01 17 53237201 53237201 G A STXBP4 Missense_Mutation p.V531I 0.41 deleterious(0.02) benign(0.006) TCGA-DX-AB2Z-01 17 59486416 59486416 T G TBX2 3'UTR 0.14 TCGA-DX-AB2Z-01 17 6915999 6915999 C T AC040977.1 Missense_Mutation p.E151K 0.04 deleterious_low_confidence(0.04) possibly_damaging(0.807) TCGA-DX-AB2Z-01 17 74936909 74936909 C A MGAT5B Silent p.I618I 0.24 TCGA-DX-AB2Z-01 18 10691220 10691220 T G PIEZO2 Intron 0.21 TCGA-DX-AB2Z-01 18 21427505 21427505 T A LAMA3 Missense_Mutation p.C1337S 0.13 probably_damaging(0.999) TCGA-DX-AB2Z-01 18 21484034 21484034 G T LAMA3 Silent p.L2152L 0.23 TCGA-DX-AB2Z-01 18 55351329 55351329 T G ATP8B1 Missense_Mutation p.E523D 0.26 tolerated(0.57) benign(0.003) TCGA-DX-AB2Z-01 18 627423 627423 C A CLUL1 Missense_Mutation p.N250K 0.17 tolerated(0.07) benign(0.129) TCGA-DX-AB2Z-01 18 76754525 76754525 A G SALL3 Missense_Mutation p.N845S 0.20 tolerated(0.1) benign(0.33) TCGA-DX-AB2Z-01 19 1080092 1080092 G C HMHA1 Missense_Mutation p.E576Q 0.16 deleterious(0.04) possibly_damaging(0.82) TCGA-DX-AB2Z-01 19 39077992 39077992 G T RYR1 Nonsense_Mutation p.E5017* 0.15 TCGA-DX-AB2Z-01 19 40009544 40009544 A G SELV Missense_Mutation p.E297G 0.18 deleterious(0) possibly_damaging(0.465) TCGA-DX-AB2Z-01 19 44635365 44635365 G T ZNF225 Missense_Mutation p.G200W 0.21 deleterious(0) probably_damaging(1) TCGA-DX-AB2Z-01 19 49132505 49132505 A G SPHK2 Silent p.A480A 0.12 TCGA-DX-AB2Z-01 19 50880857 50880857 C T NR1H2 5'UTR 0.15 TCGA-DX-AB2Z-01 19 51411893 51411893 C T KLK4 Silent p.S139S 0.23 TCGA-DX-AB2Z-01 19 58982364 58982364 C A ZNF324 Missense_Mutation p.P169T 0.06 tolerated(0.08) benign(0.231) TCGA-DX-AB2Z-01 19 6896476 6896476 C T EMR1 Silent p.Y54Y 0.13 TCGA-DX-AB2Z-01 1 10440878 10440878 C T KIF1B 3'Flank 0.31 TCGA-DX-AB2Z-01 1 111215894 111215894 T C KCNA3 Missense_Mutation p.E513G 0.22 tolerated(0.43) benign(0.001) TCGA-DX-AB2Z-01 1 1140921 1140921 C - TNFRSF18 Intron 0.20 TCGA-DX-AB2Z-01 1 151779974 151779974 C T RORC Missense_Mutation p.E511K 0.10 deleterious(0.03) benign(0.195) TCGA-DX-AB2Z-01 1 166135466 166135466 A T FAM78B Missense_Mutation p.I7N 0.10 deleterious_low_confidence(0) benign(0.323) TCGA-DX-AB2Z-01 1 192127772 192127772 A G RGS18 Missense_Mutation p.E2G 0.11 deleterious(0.03) benign(0.059) TCGA-DX-AB2Z-01 1 248112446 248112446 G T OR2L8 Missense_Mutation p.C96F 0.19 deleterious(0) possibly_damaging(0.69) TCGA-DX-AB2Z-01 1 51121153 51121153 T C FAF1 Silent p.Q235Q 0.32 TCGA-DX-AB2Z-01 1 70588666 70588666 T G LRRC7 3'Flank 0.15 TCGA-DX-AB2Z-01 1 7998781 7998781 C T TNFRSF9 Missense_Mutation p.G70S 0.30 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Z-01 20 307338 307338 G A SOX12 Missense_Mutation p.R257K 0.10 tolerated(0.57) unknown(0) TCGA-DX-AB2Z-01 20 4680309 4680309 G A PRNP Missense_Mutation p.R148H 0.11 deleterious(0) benign(0.057) TCGA-DX-AB2Z-01 20 62871989 62871989 G A MYT1 3'UTR 0.18 TCGA-DX-AB2Z-01 21 30316157 30316157 G A LTN1 Missense_Mutation p.T1397M 0.10 deleterious(0.04) possibly_damaging(0.655) TCGA-DX-AB2Z-01 2 197629231 197629231 G A GTF3C3 3'UTR 0.11 TCGA-DX-AB2Z-01 2 242447504 242447504 G - STK25 5'UTR 0.13 TCGA-DX-AB2Z-01 2 30954221 30954221 T C CAPN13 Missense_Mutation p.T658A 0.17 deleterious(0) probably_damaging(0.992) TCGA-DX-AB2Z-01 2 71043556 71043556 G A CLEC4F Silent p.F319F 0.09 TCGA-DX-AB2Z-01 2 98408981 98408981 C T TMEM131 Missense_Mutation p.A1338T 0.21 tolerated_low_confidence(1) benign(0.001) TCGA-DX-AB2Z-01 3 10370153 10370153 G A ATP2B2 3'UTR 0.16 TCGA-DX-AB2Z-01 3 122003418 122003418 C T CASR Missense_Mutation p.R883C 0.24 deleterious(0.01) probably_damaging(1) TCGA-DX-AB2Z-01 3 122418282 122418282 C T PARP14 Missense_Mutation p.P294L 0.06 tolerated(0.11) probably_damaging(0.972) TCGA-DX-AB2Z-01 3 134329079 134329079 C A KY Missense_Mutation p.G286V 0.07 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Z-01 3 138456597 138456597 G A PIK3CB Silent p.S251S 0.18 TCGA-DX-AB2Z-01 3 172165433 172165433 G T GHSR Missense_Mutation p.N257K 0.56 tolerated(0.06) benign(0.201) TCGA-DX-AB2Z-01 3 44968184 44968184 G C ZDHHC3 Silent p.V327V 0.04 TCGA-DX-AB2Z-01 3 57894866 57894866 A G SLMAP Missense_Mutation p.Q529R 0.10 deleterious_low_confidence(0.04) benign(0.004) TCGA-DX-AB2Z-01 3 9027482 9027482 C T SRGAP3 Silent p.S1007S 0.25 TCGA-DX-AB2Z-01 3 97251225 97251225 G A EPHA6 Missense_Mutation p.G742R 0.24 deleterious(0) probably_damaging(1) TCGA-DX-AB2Z-01 4 2307170 2307170 G A ZFYVE28 Silent p.D299D 0.22 TCGA-DX-AB2Z-01 4 25667869 25667869 G A SLC34A2 Missense_Mutation p.V167I 0.09 tolerated(1) benign(0.037) TCGA-DX-AB2Z-01 4 40440825 40440825 G A RBM47 Missense_Mutation p.A29V 0.23 tolerated(0.13) benign(0.004) TCGA-DX-AB2Z-01 4 42003739 42003739 G A SLC30A9 Silent p.Q72Q 0.13 TCGA-DX-AB2Z-01 4 7044669 7044669 C T CCDC96 5'UTR 0.24 TCGA-DX-AB2Z-01 5 139251347 139251347 G A NRG2 Silent p.G357G 0.08 TCGA-DX-AB2Z-01 5 180030333 180030333 C G FLT4 Silent p.G1317G 0.15 TCGA-DX-AB2Z-01 5 71501397 71501397 C T MAP1B 3'UTR 0.26 TCGA-DX-AB2Z-01 5 88016455 88016455 T C MEF2C 3'UTR 0.12 TCGA-DX-AB2Z-01 6 152772193 152772193 T G SYNE1 Missense_Mutation p.K1059Q 0.10 benign(0.031) TCGA-DX-AB2Z-01 6 153042914 153042914 C T MYCT1 Silent p.I78I 0.09 TCGA-DX-AB2Z-01 6 27835274 27835274 G A HIST1H1B Missense_Mutation p.P12S 0.07 tolerated(0.19) unknown(0) TCGA-DX-AB2Z-01 6 3227775 3227775 C A TUBB2B Translation_Start_Site p.M1? 0.14 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-DX-AB2Z-01 6 38800097 38800097 G A DNAH8 Splice_Site p.X1180_splice 0.11 TCGA-DX-AB2Z-01 6 45517766 45517766 T A RUNX2 3'UTR 0.11 TCGA-DX-AB2Z-01 6 56397194 56397194 G A DST Missense_Mutation p.L3063F 0.14 benign(0.234) TCGA-DX-AB2Z-01 6 75893745 75893745 C A COL12A1 Missense_Mutation p.M371I 0.05 probably_damaging(0.985) TCGA-DX-AB2Z-01 7 141708495 141708495 C T MGAM Missense_Mutation p.P106L 0.16 tolerated(0.66) benign(0.004) TCGA-DX-AB2Z-01 7 29160601 29160601 G C CPVL Missense_Mutation p.S26C 0.14 tolerated(0.07) possibly_damaging(0.778) TCGA-DX-AB2Z-01 7 97860661 97860661 C T TECPR1 Missense_Mutation p.V667M 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-DX-AB2Z-01 8 12040066 12040066 G A FAM86B1 3'UTR 0.12 TCGA-DX-AB2Z-01 8 139601151 139601151 G A COL22A1 3'UTR 0.09 TCGA-DX-AB2Z-01 8 82354399 82354399 C A PMP2 3'UTR 0.18 TCGA-DX-AB2Z-01 9 100234765 100234765 G T TDRD7 Missense_Mutation p.E644D 0.18 tolerated(0.13) benign(0.002) TCGA-DX-AB2Z-01 9 116059728 116059728 T C RNF183 3'Flank 0.12 TCGA-DX-AB2Z-01 9 130825710 130825710 C G NAIF1 Missense_Mutation p.Q327H 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DX-AB2Z-01 9 132584885 132584885 T C TOR1A Missense_Mutation p.H140R 0.13 deleterious(0) probably_damaging(0.999) TCGA-DX-AB2Z-01 9 136918591 136918591 G T BRD3 Silent p.T3T 0.15 TCGA-DX-AB2Z-01 9 139401067 139401067 T A NOTCH1 Missense_Mutation p.N1309I 0.08 deleterious(0) possibly_damaging(0.677) TCGA-DX-AB2Z-01 9 23691891 23691891 A - ELAVL2 3'UTR 0.10 TCGA-DX-AB2Z-01 9 37740268 37740268 G A FRMPD1 Silent p.T581T 0.16 TCGA-DX-AB2Z-01 9 5765456 5765456 C T KIAA1432 Silent p.L962L 0.06 TCGA-DX-AB2Z-01 X 153055183 153055183 G T IDH3G Missense_Mutation p.N110K 0.19 deleterious(0) probably_damaging(1) TCGA-DX-AB2Z-01 X 2408604 2408604 G A ZBED1 Nonsense_Mutation p.Q53* 0.23 TCGA-DX-AB30-01 10 226039 226039 G C ZMYND11 Missense_Mutation p.K29N 0.87 deleterious(0) possibly_damaging(0.756) TCGA-DX-AB30-01 11 58975663 58975663 G T DTX4 3'UTR 0.18 TCGA-DX-AB30-01 11 85977214 85977214 T - EED Frame_Shift_Del p.N272Kfs*44 0.51 TCGA-DX-AB30-01 15 42734502 42734502 A G ZNF106 Missense_Mutation p.F1155L 0.05 tolerated(0.4) benign(0.005) TCGA-DX-AB30-01 16 1256105 1256105 G A CACNA1H Missense_Mutation p.V869I 1.00 tolerated(0.25) possibly_damaging(0.718) TCGA-DX-AB30-01 17 18023246 18023246 G A MYO15A Missense_Mutation p.V378I 0.13 benign(0.021) TCGA-DX-AB30-01 17 29527470 29527471 - T NF1 Frame_Shift_Ins p.A308Cfs*7 0.48 TCGA-DX-AB30-01 17 7577105 7577105 G T TP53 Missense_Mutation p.P278H 0.97 deleterious(0) probably_damaging(1) TCGA-DX-AB30-01 18 14478302 14478302 T A CXADRP3 RNA 1.00 TCGA-DX-AB30-01 18 56892844 56892844 T C GRP Missense_Mutation p.L87P 0.95 deleterious(0) probably_damaging(0.987) TCGA-DX-AB30-01 19 48220051 48220051 T G EHD2 Missense_Mutation p.V61G 0.93 deleterious(0) probably_damaging(0.996) TCGA-DX-AB30-01 1 1263161 1263161 C T GLTPD1 3'UTR 0.96 TCGA-DX-AB30-01 1 157490262 157490262 G A FCRL5 Missense_Mutation p.A864V 0.25 tolerated(0.27) benign(0.089) TCGA-DX-AB30-01 21 33371479 33371479 G T HUNK Silent p.G709G 0.89 TCGA-DX-AB30-01 2 174091599 174091599 A - MLTK Intron 0.48 TCGA-DX-AB30-01 3 188592449 188592449 A C LPP 3'UTR 1.00 TCGA-DX-AB30-01 3 20025919 20025919 A T RAB5A 3'UTR 0.08 TCGA-DX-AB30-01 3 53857394 53857394 G A CHDH Silent p.T214T 0.98 TCGA-DX-AB30-01 4 74607335 74607356 ATTTATCAAAGAACTGAGAGTG - IL8 Frame_Shift_Del p.F48Lfs*14 0.96 TCGA-DX-AB30-01 5 129073837 129073837 G C ADAMTS19 3'UTR 0.93 TCGA-DX-AB30-01 6 107475958 107475958 G A PDSS2 Silent p.G355G 0.89 TCGA-DX-AB30-01 6 32064925 32064925 G A TNXB Silent p.C235C 0.11 TCGA-DX-AB30-01 6 64290720 64290730 TTTTGAAAATC - PTP4A1 3'UTR 0.98 TCGA-DX-AB30-01 7 34800738 34800738 T G NPSR1 Intron 0.62 TCGA-DX-AB30-01 8 130760969 130760969 C T GSDMC Silent p.E435E 0.06 TCGA-DX-AB30-01 9 135116314 135116314 A G NTNG2 Missense_Mutation p.I414V 1.00 tolerated(0.63) benign(0.079) TCGA-DX-AB30-01 X 138774264 138774264 C T MCF2 Intron 0.80 TCGA-DX-AB30-01 X 64725914 64725914 G C ZC3H12B 3'UTR 0.49 TCGA-DX-AB32-01 10 102767412 102767412 G T LZTS2 3'UTR 0.21 TCGA-DX-AB32-01 10 103291028 103291028 G A BTRC Missense_Mutation p.G260R 0.22 tolerated(0.05) benign(0.004) TCGA-DX-AB32-01 10 104126938 104126938 C T GBF1 Missense_Mutation p.R843C 0.18 deleterious(0) probably_damaging(0.985) TCGA-DX-AB32-01 10 105048132 105048132 C T INA Silent p.G402G 0.23 TCGA-DX-AB32-01 10 105172954 105172954 C T PDCD11 Missense_Mutation p.R354C 0.29 tolerated(0.05) possibly_damaging(0.856) TCGA-DX-AB32-01 10 120353718 120353718 G A PRLHR Missense_Mutation p.R347C 0.24 tolerated(0.14) benign(0.116) TCGA-DX-AB32-01 10 1262943 1262943 C T ADARB2 Missense_Mutation p.V544I 0.34 tolerated(0.16) benign(0.018) TCGA-DX-AB32-01 10 126715774 126715774 A T CTBP2 Silent p.S185S 0.15 TCGA-DX-AB32-01 10 15902295 15902295 A G FAM188A Missense_Mutation p.S2P 0.26 deleterious(0.02) possibly_damaging(0.522) TCGA-DX-AB32-01 10 226045 226045 T C ZMYND11 Silent p.I31I 0.25 TCGA-DX-AB32-01 10 23287301 23287301 C T ARMC3 Missense_Mutation p.A467V 0.44 tolerated(0.32) benign(0.017) TCGA-DX-AB32-01 10 27031457 27031457 G A PDSS1 Missense_Mutation p.R353Q 0.21 deleterious(0) probably_damaging(0.967) TCGA-DX-AB32-01 10 32580192 32580192 G A EPC1 Missense_Mutation p.P292S 0.41 tolerated(0.25) benign(0.029) TCGA-DX-AB32-01 10 32983811 32983811 T C C10ORF68 Silent p.H90H 0.36 TCGA-DX-AB32-01 10 6157416 6157416 C T RBM17 Missense_Mutation p.A368V 0.32 deleterious(0) probably_damaging(0.998) TCGA-DX-AB32-01 10 70405282 70405282 T C TET1 Silent p.A932A 0.45 TCGA-DX-AB32-01 10 7213964 7213964 C T SFMBT2 Missense_Mutation p.V770M 0.28 tolerated(0.11) benign(0.161) TCGA-DX-AB32-01 10 73046509 73046509 A G UNC5B Missense_Mutation p.I206V 0.27 tolerated(0.37) benign(0.401) TCGA-DX-AB32-01 10 75480331 75480331 G A RP11-574K11.28 RNA 0.22 TCGA-DX-AB32-01 10 8116656 8116656 A T GATA3 3'UTR 0.49 TCGA-DX-AB32-01 11 111808168 111808168 A C DIXDC1 5'UTR 0.24 TCGA-DX-AB32-01 11 111952739 111952739 T C C11orf57 Silent p.P118P 0.41 TCGA-DX-AB32-01 11 11969622 11969622 C T USP47 Silent p.S1006S 0.29 TCGA-DX-AB32-01 11 125821790 125821790 C T CDON 3'Flank 0.37 TCGA-DX-AB32-01 11 129794819 129794819 G C PRDM10 Missense_Mutation p.F616L 0.11 deleterious(0.02) probably_damaging(0.979) TCGA-DX-AB32-01 11 15197525 15197525 C T INSC Missense_Mutation p.R146C 0.33 deleterious(0) probably_damaging(0.997) TCGA-DX-AB32-01 11 17121490 17121490 A G PIK3C2A Silent p.L1345L 0.30 TCGA-DX-AB32-01 11 18762166 18762166 A G PTPN5 Missense_Mutation p.L300P 0.19 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 11 19261685 19261685 A G E2F8 5'UTR 0.29 TCGA-DX-AB32-01 11 2339194 2339194 C T TSPAN32 3'UTR 0.38 TCGA-DX-AB32-01 11 2423909 2423909 G A TSSC4 Missense_Mutation p.E16K 0.22 tolerated(0.37) benign(0.006) TCGA-DX-AB32-01 11 30602031 30602031 G A MPPED2 5'UTR 0.25 TCGA-DX-AB32-01 11 58973154 58973154 T G DTX4 3'UTR 0.23 TCGA-DX-AB32-01 11 59245410 59245410 G A OR4D10 Missense_Mutation p.G170R 0.15 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 11 61563610 61563610 C T FEN1 Silent p.I259I 0.24 TCGA-DX-AB32-01 11 619384 619384 C T CDHR5 Missense_Mutation p.A434T 0.18 deleterious(0) benign(0.399) TCGA-DX-AB32-01 11 62559287 62559287 A G TMEM223 Silent p.A60A 0.25 TCGA-DX-AB32-01 11 65315007 65315007 G A LTBP3 Silent p.C670C 0.26 TCGA-DX-AB32-01 11 66055130 66055130 G A YIF1A Silent p.Y122Y 0.37 TCGA-DX-AB32-01 11 66360012 66360012 C T CCDC87 Missense_Mutation p.A159T 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-DX-AB32-01 11 67049161 67049161 C T ADRBK1 Missense_Mutation p.T263M 0.22 deleterious(0) probably_damaging(0.998) TCGA-DX-AB32-01 11 69625374 69625374 G A FGF3 Missense_Mutation p.T140M 0.30 deleterious(0.01) possibly_damaging(0.86) TCGA-DX-AB32-01 11 73071453 73071453 C T ARHGEF17 Missense_Mutation p.P1432L 0.24 tolerated(0.38) benign(0.085) TCGA-DX-AB32-01 11 76814248 76814248 C T OMP Silent p.D121D 0.30 TCGA-DX-AB32-01 11 76901827 76901827 C T MYO7A Missense_Mutation p.T1279M 0.26 deleterious(0) probably_damaging(0.979) TCGA-DX-AB32-01 11 7712590 7712590 G T OVCH2 Missense_Mutation p.P517T 0.26 tolerated(0.45) benign(0.001) TCGA-DX-AB32-01 12 110474119 110474119 C T ANKRD13A Silent p.D521D 0.20 TCGA-DX-AB32-01 12 110784304 110784304 A G ATP2A2 3'UTR 0.33 TCGA-DX-AB32-01 12 112601463 112601463 C T HECTD4 Silent p.T4114T 0.14 TCGA-DX-AB32-01 12 113515459 113515459 C T DTX1 Missense_Mutation p.R164C 0.24 deleterious(0.01) possibly_damaging(0.748) TCGA-DX-AB32-01 12 119592120 119592120 G T SRRM4 Silent p.R488R 0.30 TCGA-DX-AB32-01 12 119595950 119595950 C T SRRM4 3'UTR 0.34 TCGA-DX-AB32-01 12 121098562 121098562 C T CABP1 Silent p.F286F 0.21 TCGA-DX-AB32-01 12 123014670 123014670 C T KNTC1 Silent p.V20V 0.28 TCGA-DX-AB32-01 12 125461958 125461958 C T DHX37 Missense_Mutation p.V273M 0.24 deleterious(0) possibly_damaging(0.843) TCGA-DX-AB32-01 12 128900080 128900080 C A TMEM132C Missense_Mutation p.P297T 0.34 deleterious(0.04) possibly_damaging(0.615) TCGA-DX-AB32-01 12 130521541 130521541 G T RP11-474D1.3 RNA 0.38 TCGA-DX-AB32-01 12 132403074 132403074 C T ULK1 Missense_Mutation p.R787C 0.33 tolerated(0.21) probably_damaging(0.997) TCGA-DX-AB32-01 12 132625047 132625047 C T DDX51 Missense_Mutation p.V532M 0.24 deleterious(0) probably_damaging(0.988) TCGA-DX-AB32-01 12 133779442 133779442 T C ZNF268 Silent p.C390C 0.23 TCGA-DX-AB32-01 12 22677416 22677416 C T C2CD5 Silent p.S197S 0.23 TCGA-DX-AB32-01 12 26775294 26775294 G A ITPR2 Missense_Mutation p.T1056M 0.21 tolerated(0.71) benign(0.088) TCGA-DX-AB32-01 12 46601385 46601385 C G SLC38A1 Missense_Mutation p.K136N 0.35 deleterious(0.01) probably_damaging(0.979) TCGA-DX-AB32-01 12 49416528 49416528 A G KMT2D Missense_Mutation p.W5395R 0.28 unknown(0) TCGA-DX-AB32-01 12 50514094 50514094 G A COX14 3'UTR 0.25 TCGA-DX-AB32-01 12 51501087 51501087 T - TFCP2 Frame_Shift_Del p.M254Wfs*105 0.16 TCGA-DX-AB32-01 12 56091249 56091249 G A ITGA7 Silent p.G501G 0.21 TCGA-DX-AB32-01 12 56113288 56113288 T C BLOC1S1 Silent p.I119I 0.31 TCGA-DX-AB32-01 12 56231653 56231653 C T MMP19 Missense_Mutation p.R345Q 0.27 deleterious(0.02) possibly_damaging(0.892) TCGA-DX-AB32-01 12 69652407 69652407 A C CPSF6 Silent p.P244P 0.26 TCGA-DX-AB32-01 12 70956827 70956827 C T PTPRB Missense_Mutation p.R1322H 0.27 tolerated(0.12) benign(0.003) TCGA-DX-AB32-01 12 7173822 7173822 C T C1S Missense_Mutation p.P291L 0.19 deleterious(0.04) probably_damaging(0.975) TCGA-DX-AB32-01 12 86374058 86374058 C T MGAT4C Missense_Mutation p.R149H 0.37 tolerated(0.56) benign(0.125) TCGA-DX-AB32-01 13 100617386 100617386 T A ZIC5 3'UTR 0.21 TCGA-DX-AB32-01 13 21548034 21548034 G A LATS2 3'UTR 0.22 TCGA-DX-AB32-01 13 21563156 21563156 G A LATS2 Missense_Mutation p.R255W 0.40 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-DX-AB32-01 13 30341763 30341763 T C UBL3 Missense_Mutation p.N98S 0.18 tolerated(0.12) benign(0.031) TCGA-DX-AB32-01 13 48947629 48947629 G A RB1 Splice_Site p.X405_splice 0.39 TCGA-DX-AB32-01 13 51825713 51825713 G A FAM124A Silent p.A106A 0.12 TCGA-DX-AB32-01 13 52989814 52989814 C T VPS36 3'UTR 0.24 TCGA-DX-AB32-01 13 86368334 86368334 T C SLITRK6 Silent p.G770G 0.21 TCGA-DX-AB32-01 13 96622469 96622469 C T UGGT2 Missense_Mutation p.R411H 0.26 tolerated(1) benign(0.001) TCGA-DX-AB32-01 14 105420418 105420418 C T AHNAK2 Missense_Mutation p.S457N 0.29 possibly_damaging(0.622) TCGA-DX-AB32-01 14 106173669 106173669 C T IGHA1 Missense_Mutation p.V300M 0.12 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 14 22564641 22564641 T C TRDV1 Missense_Mutation p.V31A 0.56 deleterious(0.01) benign(0.109) TCGA-DX-AB32-01 14 35480757 35480757 A G SRP54 Silent p.V176V 0.34 TCGA-DX-AB32-01 14 38016204 38016204 C T MIPOL1 3'UTR 0.14 TCGA-DX-AB32-01 14 61285544 61285544 G A MNAT1 Silent p.T222T 0.34 TCGA-DX-AB32-01 14 64430701 64430701 T C SYNE2 Missense_Mutation p.Y325H 0.28 possibly_damaging(0.887) TCGA-DX-AB32-01 14 73491176 73491176 G T ZFYVE1 Missense_Mutation p.P14Q 0.19 tolerated_low_confidence(0.08) benign(0.105) TCGA-DX-AB32-01 14 81743643 81743643 C T STON2 Missense_Mutation p.R671Q 0.56 deleterious(0.04) probably_damaging(0.988) TCGA-DX-AB32-01 14 96730713 96730713 C T BDKRB1 Missense_Mutation p.R232W 0.41 deleterious(0.04) benign(0.212) TCGA-DX-AB32-01 15 101464888 101464888 G A LRRK1 Silent p.P17P 0.20 TCGA-DX-AB32-01 15 22867531 22867531 C T TUBGCP5 Silent p.F869F 0.32 TCGA-DX-AB32-01 15 25334989 25334989 G A SNORD116-23 5'Flank 0.15 TCGA-DX-AB32-01 15 31819495 31819495 G A OTUD7A Silent p.H223H 0.29 TCGA-DX-AB32-01 15 40564448 40564448 G A PAK6 Silent p.P294P 0.32 TCGA-DX-AB32-01 15 41191385 41191385 C T VPS18 Silent p.Y123Y 0.15 TCGA-DX-AB32-01 15 41680706 41680706 T A NDUFAF1 Missense_Mutation p.K258N 0.07 deleterious(0.01) probably_damaging(1) TCGA-DX-AB32-01 15 42444923 42444923 C T PLA2G4F Silent p.T188T 0.21 TCGA-DX-AB32-01 15 45455992 45455992 T C DUOX1 Missense_Mutation p.I1470T 0.29 deleterious(0) probably_damaging(0.982) TCGA-DX-AB32-01 15 49917553 49917553 T C DTWD1 Silent p.G63G 0.31 TCGA-DX-AB32-01 15 56164658 56164658 A G NEDD4 Intron 0.22 TCGA-DX-AB32-01 15 69732777 69732777 G A KIF23 Missense_Mutation p.R673Q 0.26 deleterious(0.04) benign(0.397) TCGA-DX-AB32-01 15 71341850 71341850 C T LRRC49 Missense_Mutation p.P659S 0.33 tolerated(0.05) probably_damaging(0.95) TCGA-DX-AB32-01 15 74883522 74883522 T C ARID3B Silent p.C304C 0.21 TCGA-DX-AB32-01 15 74883953 74883953 C A ARID3B Silent p.P406P 0.18 TCGA-DX-AB32-01 15 78805653 78805653 C T HYKK Missense_Mutation p.P75S 0.24 tolerated(0.12) benign(0.271) TCGA-DX-AB32-01 15 89391218 89391218 C T ACAN Missense_Mutation p.R561C 0.31 deleterious(0) unknown(0) TCGA-DX-AB32-01 16 11275937 11275937 G T CLEC16A 3'UTR 0.17 TCGA-DX-AB32-01 16 12223607 12223607 G A SNX29 Silent p.A529A 0.52 TCGA-DX-AB32-01 16 1271958 1271958 G A TPSG1 Missense_Mutation p.R266C 0.38 tolerated(0.07) benign(0.007) TCGA-DX-AB32-01 16 1547054 1547054 G A TELO2 Missense_Mutation p.V211M 0.15 deleterious(0) benign(0.269) TCGA-DX-AB32-01 16 15818776 15818776 G A MYH11 Missense_Mutation p.A1318V 0.26 benign(0.017) TCGA-DX-AB32-01 16 2126103 2126103 G A TSC2 Missense_Mutation p.V892I 0.24 deleterious(0) possibly_damaging(0.693) TCGA-DX-AB32-01 16 21854779 21854779 C T NPIPB4 Missense_Mutation p.R158H 0.10 benign(0.293) TCGA-DX-AB32-01 16 22296376 22296376 G A EEF2K 3'UTR 0.21 TCGA-DX-AB32-01 16 22337274 22337274 C T POLR3E Missense_Mutation p.A514V 0.29 tolerated(0.28) benign(0.002) TCGA-DX-AB32-01 16 2284933 2284933 G A E4F1 Silent p.T622T 0.35 TCGA-DX-AB32-01 16 23768982 23768982 C T CHP2 3'UTR 0.21 TCGA-DX-AB32-01 16 24895407 24895407 C T SLC5A11 Nonsense_Mutation p.Q207* 0.40 TCGA-DX-AB32-01 16 29872575 29872575 G A CDIPT Missense_Mutation p.R62W 0.20 deleterious(0) possibly_damaging(0.719) TCGA-DX-AB32-01 16 30128165 30128165 C T MAPK3 Intron 0.20 TCGA-DX-AB32-01 16 30795100 30795100 G A ZNF629 Silent p.C183C 0.23 TCGA-DX-AB32-01 16 31501714 31501714 C T SLC5A2 Missense_Mutation p.P626L 0.38 deleterious(0.01) benign(0.001) TCGA-DX-AB32-01 16 4043497 4043497 G A ADCY9 Silent p.C633C 0.22 TCGA-DX-AB32-01 16 4307450 4307450 A T TFAP4 3'UTR 0.30 TCGA-DX-AB32-01 16 4307590 4307590 C G TFAP4 3'UTR 0.34 TCGA-DX-AB32-01 16 4307979 4307979 C G TFAP4 3'UTR 0.29 TCGA-DX-AB32-01 16 4308077 4308077 C A TFAP4 Silent p.S332S 0.26 TCGA-DX-AB32-01 16 4308095 4308095 C G TFAP4 Missense_Mutation p.Q326H 0.29 tolerated_low_confidence(0.28) unknown(0) TCGA-DX-AB32-01 16 4312668 4312668 G A TFAP4 Missense_Mutation p.R42W 0.31 deleterious(0.03) benign(0.032) TCGA-DX-AB32-01 16 4383462 4383462 G A GLIS2 Missense_Mutation p.S96N 0.31 tolerated_low_confidence(0.13) benign(0.001) TCGA-DX-AB32-01 16 4387501 4387501 G C GLIS2 Silent p.L517L 0.14 TCGA-DX-AB32-01 16 4411429 4411429 C T CORO7 Silent p.T540T 0.16 TCGA-DX-AB32-01 16 57059999 57059999 G A NLRC5 Missense_Mutation p.A382T 0.28 tolerated(0.25) benign(0.015) TCGA-DX-AB32-01 16 72153614 72153614 C T PMFBP1 Intron 0.34 TCGA-DX-AB32-01 17 1368385 1368385 C T MYO1C 3'UTR 0.19 TCGA-DX-AB32-01 17 1478890 1478890 G A SLC43A2 3'UTR 0.26 TCGA-DX-AB32-01 17 15133713 15133713 C T PMP22 3'UTR 0.40 TCGA-DX-AB32-01 17 16725746 16725746 C T AC022596.6 RNA 0.33 TCGA-DX-AB32-01 17 2268616 2268616 C T SGSM2 Silent p.P423P 0.36 TCGA-DX-AB32-01 17 28601155 28601155 G A BLMH Nonsense_Mutation p.R236* 0.35 TCGA-DX-AB32-01 17 29182214 29182214 G A ATAD5 Missense_Mutation p.R835H 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB32-01 17 3366054 3366054 G T SPATA22 Silent p.A60A 0.35 TCGA-DX-AB32-01 17 36623383 36623383 G A ARHGAP23 Missense_Mutation p.D487N 0.42 tolerated(0.06) benign(0.15) TCGA-DX-AB32-01 17 47590304 47590304 G A NGFR Missense_Mutation p.R406H 0.33 deleterious(0.01) benign(0.059) TCGA-DX-AB32-01 17 48266268 48266268 C T COL1A1 Missense_Mutation p.R1014H 0.19 unknown(0) TCGA-DX-AB32-01 17 54939227 54939227 G A DGKE Missense_Mutation p.G454S 0.22 tolerated(0.07) probably_damaging(1) TCGA-DX-AB32-01 17 56081872 56081872 A G SRSF1 3'Flank 0.20 TCGA-DX-AB32-01 17 59557599 59557599 G A TBX4 Missense_Mutation p.A314T 0.15 tolerated(0.22) benign(0.148) TCGA-DX-AB32-01 17 61620974 61620974 C A KCNH6 Missense_Mutation p.P729H 0.08 deleterious(0.01) possibly_damaging(0.469) TCGA-DX-AB32-01 17 67218780 67218780 T - ABCA10 Frame_Shift_Del p.K31Nfs*18 0.23 TCGA-DX-AB32-01 17 6930824 6930824 C T BCL6B Silent p.C442C 0.23 TCGA-DX-AB32-01 17 71334502 71334502 A G SDK2 3'UTR 0.27 TCGA-DX-AB32-01 17 73518349 73518349 G A TSEN54 Missense_Mutation p.R396Q 0.33 tolerated(0.16) benign(0.005) TCGA-DX-AB32-01 17 73620669 73620669 C T RECQL5 3'Flank 0.20 TCGA-DX-AB32-01 17 74053539 74053539 T A SRP68 Missense_Mutation p.D308V 0.28 deleterious(0.01) possibly_damaging(0.511) TCGA-DX-AB32-01 17 74290028 74290028 G A QRICH2 Silent p.S94S 0.34 TCGA-DX-AB32-01 17 7577525 7577527 GAG - TP53 In_Frame_Del p.L252del 0.29 TCGA-DX-AB32-01 17 76818061 76818061 T C USP36 Missense_Mutation p.T239A 0.28 deleterious(0) probably_damaging(0.963) TCGA-DX-AB32-01 17 78172401 78172401 C T CARD14 Intron 0.28 TCGA-DX-AB32-01 17 7990879 7990879 C T ALOX12B 5'UTR 0.56 TCGA-DX-AB32-01 17 8638826 8638826 G A CCDC42 Missense_Mutation p.A199V 0.50 deleterious(0.03) probably_damaging(0.985) TCGA-DX-AB32-01 18 11881230 11881230 G A GNAL 3'UTR 0.38 TCGA-DX-AB32-01 18 14537923 14537923 G A POTEC Silent p.G229G 0.27 TCGA-DX-AB32-01 18 42529889 42529889 C T SETBP1 Missense_Mutation p.T195M 0.11 deleterious(0.02) benign(0.003) TCGA-DX-AB32-01 18 77513722 77513722 G A CTDP1 Missense_Mutation p.E940K 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-DX-AB32-01 19 10692454 10692454 G T AP1M2 Missense_Mutation p.P123Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-DX-AB32-01 19 10753751 10753751 T G SLC44A2 Intron 0.24 TCGA-DX-AB32-01 19 11280774 11280774 C T KANK2 Missense_Mutation p.A796T 0.17 tolerated(0.22) benign(0.003) TCGA-DX-AB32-01 19 14561159 14561159 C T PKN1 Missense_Mutation p.R220C 0.33 deleterious(0) probably_damaging(0.99) TCGA-DX-AB32-01 19 15586656 15586656 G A PGLYRP2 Silent p.G275G 0.12 TCGA-DX-AB32-01 19 17317535 17317535 G A MYO9B Missense_Mutation p.E1812K 0.17 deleterious(0) possibly_damaging(0.861) TCGA-DX-AB32-01 19 19369469 19369469 C T HAPLN4 Missense_Mutation p.R227Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-DX-AB32-01 19 1990741 1990741 C T BTBD2 Silent p.A255A 0.29 TCGA-DX-AB32-01 19 2041986 2041986 G A MKNK2 Silent p.S266S 0.27 TCGA-DX-AB32-01 19 21608124 21608124 C T ZNF493 3'UTR 0.25 TCGA-DX-AB32-01 19 30505904 30505904 G A URI1 Silent p.L512L 0.20 TCGA-DX-AB32-01 19 40411970 40411970 C T FCGBP Missense_Mutation p.G1220S 0.29 probably_damaging(0.996) TCGA-DX-AB32-01 19 40740957 40740957 T C AKT2 Missense_Mutation p.D454G 0.23 tolerated(0.19) possibly_damaging(0.519) TCGA-DX-AB32-01 19 40964425 40964425 T C BLVRB Missense_Mutation p.D36G 0.33 deleterious(0) probably_damaging(0.977) TCGA-DX-AB32-01 19 41387540 41387540 G A CYP2A7 Silent p.S99S 0.33 TCGA-DX-AB32-01 19 43585129 43585129 C T PSG2 Missense_Mutation p.V112I 0.27 tolerated(0.15) benign(0.362) TCGA-DX-AB32-01 19 4446615 4446615 C T UBXN6 Missense_Mutation p.A268T 0.41 tolerated(0.18) benign(0.426) TCGA-DX-AB32-01 19 44636829 44636829 C T ZNF225 Missense_Mutation p.R688C 0.25 tolerated(0.11) possibly_damaging(0.517) TCGA-DX-AB32-01 19 45150757 45150757 C T PVR Silent p.R114R 0.29 TCGA-DX-AB32-01 19 45316842 45316842 G A BCAM Missense_Mutation p.R250H 0.43 tolerated(0.22) benign(0.001) TCGA-DX-AB32-01 19 48305590 48305590 T C TPRX1 Silent p.P226P 0.18 TCGA-DX-AB32-01 19 50097789 50097789 C T PRR12 Missense_Mutation p.S93L 0.25 possibly_damaging(0.519) TCGA-DX-AB32-01 19 507660 507660 C T TPGS1 Silent p.L52L 0.22 TCGA-DX-AB32-01 19 50826791 50826791 G A KCNC3 Silent p.G473G 0.17 TCGA-DX-AB32-01 19 51645979 51645979 C T SIGLEC7 Missense_Mutation p.A118V 0.28 tolerated(0.08) benign(0.331) TCGA-DX-AB32-01 19 52196888 52196888 C T SPACA6P RNA 0.35 TCGA-DX-AB32-01 19 52856965 52856965 G A ZNF610 Missense_Mutation p.E32K 0.22 deleterious(0.04) probably_damaging(0.99) TCGA-DX-AB32-01 19 53269192 53269192 G A ZNF600 Missense_Mutation p.A606V 0.31 deleterious(0.01) benign(0.266) TCGA-DX-AB32-01 19 53886884 53886884 G A ZNF525 3'UTR 0.29 TCGA-DX-AB32-01 19 54215555 54215555 T C MIR517A RNA 0.22 TCGA-DX-AB32-01 19 54967838 54967838 G A LENG8 Missense_Mutation p.R490H 0.25 deleterious(0.02) probably_damaging(0.97) TCGA-DX-AB32-01 19 55147800 55147800 C T AC009892.10 Intron 0.40 TCGA-DX-AB32-01 19 55494501 55494501 G A NLRP2 Missense_Mutation p.D479N 0.31 tolerated(0.09) possibly_damaging(0.677) TCGA-DX-AB32-01 19 5616451 5616451 G A SAFB2 Silent p.D107D 0.21 TCGA-DX-AB32-01 19 57175104 57175104 G A ZNF835 Missense_Mutation p.A488V 0.26 tolerated(0.37) benign(0.332) TCGA-DX-AB32-01 19 59092830 59092837 TGGCGCTT - CENPBD1P1 Intron 0.12 TCGA-DX-AB32-01 19 6760806 6760806 T A SH2D3A Missense_Mutation p.I88L 0.27 tolerated(0.55) benign(0) TCGA-DX-AB32-01 19 8615468 8615468 G A MYO1F Silent p.Y294Y 0.11 TCGA-DX-AB32-01 19 9237062 9237062 A G OR7G3 Missense_Mutation p.C189R 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-DX-AB32-01 1 10511723 10511723 T C APITD1-CORT 3'UTR 0.22 TCGA-DX-AB32-01 1 10703232 10703232 G A CASZ1 Silent p.R1335R 0.21 TCGA-DX-AB32-01 1 110765809 110765809 T C KCNC4 Missense_Mutation p.V301A 0.21 tolerated(0.14) benign(0.223) TCGA-DX-AB32-01 1 1120598 1120598 C T TTLL10 Intron 0.21 TCGA-DX-AB32-01 1 115226834 115226834 T C AMPD1 Missense_Mutation p.E211G 0.24 deleterious(0.03) benign(0.284) TCGA-DX-AB32-01 1 118499757 118499757 C T WDR3 Silent p.N840N 0.31 TCGA-DX-AB32-01 1 120301801 120301801 G A HMGCS2 Missense_Mutation p.R264W 0.25 deleterious(0.03) probably_damaging(0.975) TCGA-DX-AB32-01 1 12835688 12835688 G A PRAMEF12 Missense_Mutation p.R97Q 0.34 deleterious(0.02) benign(0.001) TCGA-DX-AB32-01 1 1417600 1417600 C T ATAD3B Silent p.A199A 0.55 TCGA-DX-AB32-01 1 144852395 144852395 T G PDE4DIP Silent p.R2350R 0.09 TCGA-DX-AB32-01 1 144890626 144890626 G C PDE4DIP Intron 0.15 TCGA-DX-AB32-01 1 145535815 145535815 G A ITGA10 Missense_Mutation p.R668Q 0.48 deleterious(0.01) probably_damaging(1) TCGA-DX-AB32-01 1 152129217 152129217 G T RPTN Missense_Mutation p.Q120K 0.20 deleterious(0.02) benign(0.045) TCGA-DX-AB32-01 1 152286948 152286948 C A FLG Missense_Mutation p.K138N 0.08 benign(0.432) TCGA-DX-AB32-01 1 154179927 154179927 C T C1orf43 3'UTR 0.19 TCGA-DX-AB32-01 1 155931509 155931509 G A ARHGEF2 Missense_Mutation p.R471C 0.27 deleterious(0) probably_damaging(0.998) TCGA-DX-AB32-01 1 156180795 156180795 G A SLC25A44 3'UTR 0.27 TCGA-DX-AB32-01 1 156280431 156280431 G A CCT3 Missense_Mutation p.T484M 0.28 deleterious(0.02) benign(0.422) TCGA-DX-AB32-01 1 158736114 158736114 T C OR6N1 Missense_Mutation p.Y120C 0.23 deleterious(0) probably_damaging(0.999) TCGA-DX-AB32-01 1 160811420 160811420 A G CD244 Silent p.S111S 0.38 TCGA-DX-AB32-01 1 161093976 161093976 T C DEDD Missense_Mutation p.T93A 0.26 deleterious(0.01) probably_damaging(0.988) TCGA-DX-AB32-01 1 161141722 161141722 G A B4GALT3 Missense_Mutation p.R356C 0.17 deleterious_low_confidence(0.03) benign(0.18) TCGA-DX-AB32-01 1 165370516 165370516 G A RXRG Missense_Mutation p.P459L 0.26 deleterious(0) probably_damaging(0.996) TCGA-DX-AB32-01 1 169524539 169524539 G T F5 Silent p.T333T 0.25 TCGA-DX-AB32-01 1 170024465 170024465 G A KIFAP3 Nonsense_Mutation p.R49* 0.11 TCGA-DX-AB32-01 1 17084153 17084153 C A MST1L Splice_Site 0.07 TCGA-DX-AB32-01 1 181018220 181018220 G A MR1 Missense_Mutation p.V34I 0.28 tolerated(0.1) benign(0.021) TCGA-DX-AB32-01 1 182496778 182496778 C T RGSL1 Missense_Mutation p.R666W 0.20 deleterious(0) probably_damaging(0.97) TCGA-DX-AB32-01 1 184588668 184588668 C T C1orf21 Missense_Mutation p.S115L 0.28 deleterious(0) possibly_damaging(0.776) TCGA-DX-AB32-01 1 186147733 186147733 C A HMCN1 Missense_Mutation p.P5377T 0.23 benign(0.025) TCGA-DX-AB32-01 1 186360840 186360840 C T C1orf27 Missense_Mutation p.R210C 0.29 deleterious(0.04) possibly_damaging(0.761) TCGA-DX-AB32-01 1 19209672 19209672 C T ALDH4A1 Silent p.S208S 0.18 TCGA-DX-AB32-01 1 196654365 196654365 C - CFH Frame_Shift_Del p.L322* 0.15 TCGA-DX-AB32-01 1 200375593 200375593 G T ZNF281 3'UTR 0.30 TCGA-DX-AB32-01 1 200375769 200375769 A T ZNF281 3'UTR 0.26 TCGA-DX-AB32-01 1 200572974 200572974 C T KIF14 Missense_Mutation p.R619Q 0.42 deleterious(0.02) possibly_damaging(0.84) TCGA-DX-AB32-01 1 201174376 201174376 C T IGFN1 Silent p.D361D 0.29 TCGA-DX-AB32-01 1 201374746 201374746 G A TNNI1 3'UTR 0.14 TCGA-DX-AB32-01 1 203014996 203014996 G T PPFIA4 Nonsense_Mutation p.E3* 0.29 TCGA-DX-AB32-01 1 203316599 203316599 G A FMOD Missense_Mutation p.A267V 0.31 tolerated(0.48) benign(0.032) TCGA-DX-AB32-01 1 20669069 20669069 C T VWA5B1 Missense_Mutation p.R760W 0.22 deleterious(0.05) benign(0.443) TCGA-DX-AB32-01 1 2125187 2125187 G A C1orf86 Missense_Mutation p.R121C 0.34 tolerated(0.19) benign(0.193) TCGA-DX-AB32-01 1 220870167 220870167 G A C1orf115 3'UTR 0.14 TCGA-DX-AB32-01 1 22149987 22149987 G A HSPG2 Intron 0.23 TCGA-DX-AB32-01 1 228506748 228506748 C T OBSCN Silent p.D5722D 0.24 TCGA-DX-AB32-01 1 231067164 231067164 T C TTC13 Missense_Mutation p.S394G 0.21 tolerated(0.11) benign(0.265) TCGA-DX-AB32-01 1 231696971 231696971 G A TSNAX Silent p.T155T 0.23 TCGA-DX-AB32-01 1 237758894 237758894 G A RYR2 Silent p.V1511V 0.31 TCGA-DX-AB32-01 1 237919660 237919660 G T RYR2 Missense_Mutation p.V3740L 0.20 possibly_damaging(0.701) TCGA-DX-AB32-01 1 242162088 242162088 T C MAP1LC3C Missense_Mutation p.N35S 0.06 tolerated(0.31) benign(0.07) TCGA-DX-AB32-01 1 242253179 242253179 C T PLD5 Missense_Mutation p.G530R 0.27 tolerated_low_confidence(0.19) benign(0.001) TCGA-DX-AB32-01 1 248789924 248789924 C T OR2T11 Missense_Mutation p.R169Q 0.47 tolerated(0.11) benign(0.303) TCGA-DX-AB32-01 1 249142625 249142625 G A ZNF672 Silent p.L384L 0.37 TCGA-DX-AB32-01 1 27217287 27217287 C T GPATCH3 3'UTR 0.24 TCGA-DX-AB32-01 1 27684949 27684949 G A MAP3K6 Missense_Mutation p.R913C 0.25 deleterious(0.02) benign(0.025) TCGA-DX-AB32-01 1 27690425 27690425 A G MAP3K6 Missense_Mutation p.S283P 0.35 deleterious(0) probably_damaging(0.998) TCGA-DX-AB32-01 1 32540672 32540672 G A TMEM39B Missense_Mutation p.R42H 0.19 deleterious(0) probably_damaging(0.997) TCGA-DX-AB32-01 1 33292387 33292387 T C S100PBP Silent p.P229P 0.31 TCGA-DX-AB32-01 1 38185238 38185238 G - EPHA10 Frame_Shift_Del p.R869Gfs*10 0.28 TCGA-DX-AB32-01 1 42657144 42657144 G A FOXJ3 Missense_Mutation p.P394L 0.37 tolerated(0.18) benign(0.197) TCGA-DX-AB32-01 1 47395751 47395751 C T CYP4A11 3'UTR 0.42 TCGA-DX-AB32-01 1 53724100 53724100 A G LRP8 Silent p.C700C 0.53 TCGA-DX-AB32-01 1 54060531 54060531 C T GLIS1 Silent p.P15P 0.26 TCGA-DX-AB32-01 1 57480999 57480999 G A DAB1 Missense_Mutation p.P334L 0.13 deleterious(0.01) possibly_damaging(0.793) TCGA-DX-AB32-01 1 6160105 6160105 C - KCNAB2 3'UTR 0.24 TCGA-DX-AB32-01 1 65693020 65693020 C A AK4 3'UTR 0.24 TCGA-DX-AB32-01 1 78340863 78340863 A - FAM73A 3'UTR 0.23 TCGA-DX-AB32-01 1 89835160 89835160 C T GBP6 Silent p.C82C 0.35 TCGA-DX-AB32-01 1 98293695 98293695 G A DPYD Nonsense_Mutation p.R70* 0.25 TCGA-DX-AB32-01 20 30898718 30898718 C T KIF3B Nonsense_Mutation p.R380* 0.36 TCGA-DX-AB32-01 20 35555586 35555586 G A SAMHD1 Missense_Mutation p.T232M 0.20 deleterious(0) possibly_damaging(0.849) TCGA-DX-AB32-01 20 35858442 35858442 A G RPN2 Missense_Mutation p.T521A 0.21 tolerated(1) benign(0.314) TCGA-DX-AB32-01 20 3804825 3804825 C T AP5S1 Missense_Mutation p.R162W 0.29 deleterious(0) possibly_damaging(0.855) TCGA-DX-AB32-01 20 44539885 44539885 G A PLTP Nonsense_Mutation p.Q36* 0.20 TCGA-DX-AB32-01 20 45910883 45910883 C T ZMYND8 Missense_Mutation p.G321R 0.33 deleterious(0) probably_damaging(0.944) TCGA-DX-AB32-01 20 5564938 5564938 A G GPCPD1 Missense_Mutation p.F113S 0.37 deleterious(0) probably_damaging(0.988) TCGA-DX-AB32-01 20 55748120 55748120 G A BMP7 Intron 0.31 TCGA-DX-AB32-01 20 61711537 61711537 C G RP11-305P22.9 RNA 0.14 TCGA-DX-AB32-01 20 61711624 61711624 C T RP11-305P22.9 RNA 0.14 TCGA-DX-AB32-01 20 61711627 61711627 C T RP11-305P22.9 RNA 0.14 TCGA-DX-AB32-01 20 62046292 62046292 G A KCNQ2 Missense_Mutation p.R497C 0.35 deleterious(0.02) benign(0.075) TCGA-DX-AB32-01 20 62500659 62500659 G A TPD52L2 Silent p.L10L 0.22 TCGA-DX-AB32-01 20 62632529 62632529 A T PRPF6 Missense_Mutation p.I375F 0.20 deleterious(0.02) benign(0.016) TCGA-DX-AB32-01 21 34060616 34060616 C A SYNJ1 Missense_Mutation p.R323M 0.30 deleterious(0) probably_damaging(0.999) TCGA-DX-AB32-01 21 37741473 37741473 G A MORC3 Missense_Mutation p.V603I 0.41 tolerated(0.83) benign(0) TCGA-DX-AB32-01 21 41710165 41710165 C T DSCAM Missense_Mutation p.R549H 0.30 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 21 47556290 47556290 C T FTCD 3'UTR 0.28 TCGA-DX-AB32-01 22 21370346 21370346 C T P2RX6 Silent p.L94L 0.28 TCGA-DX-AB32-01 22 21988606 21988606 G A CCDC116 Missense_Mutation p.R123Q 0.24 tolerated(0.13) benign(0.345) TCGA-DX-AB32-01 22 22313572 22313572 G A TOP3B Missense_Mutation p.P613S 0.33 tolerated(0.39) benign(0.016) TCGA-DX-AB32-01 22 26860178 26860178 C T HPS4 Missense_Mutation p.R473H 0.24 tolerated(0.24) benign(0.001) TCGA-DX-AB32-01 22 29837909 29837909 T C RFPL1 Missense_Mutation p.M251T 0.24 tolerated(0.07) benign(0.033) TCGA-DX-AB32-01 22 36737437 36737437 G A MYH9 Silent p.T156T 0.32 TCGA-DX-AB32-01 22 38167666 38167666 C T TRIOBP Missense_Mutation p.R2287C 0.16 deleterious(0) probably_damaging(0.997) TCGA-DX-AB32-01 22 40077043 40077043 C T CACNA1I Missense_Mutation p.R1884C 0.26 tolerated(0.05) benign(0.001) TCGA-DX-AB32-01 2 10193059 10193059 A C KLF11 3'UTR 0.34 TCGA-DX-AB32-01 2 102091140 102091140 T G RFX8 5'UTR 0.21 TCGA-DX-AB32-01 2 109092052 109092052 C T GCC2 Silent p.A974A 0.25 TCGA-DX-AB32-01 2 111857883 111857883 C T ACOXL Intron 0.30 TCGA-DX-AB32-01 2 113891508 113891508 G A IL1RN 3'UTR 0.31 TCGA-DX-AB32-01 2 118674843 118674843 G A CCDC93 3'UTR 0.30 TCGA-DX-AB32-01 2 120692378 120692378 G A PTPN4 Missense_Mutation p.R400Q 0.10 tolerated(0.11) benign(0.003) TCGA-DX-AB32-01 2 130877846 130877846 G A POTEF Silent p.G81G 0.21 TCGA-DX-AB32-01 2 132277119 132277119 G A AC093838.4 RNA 0.23 TCGA-DX-AB32-01 2 141201965 141201965 T C LRP1B Missense_Mutation p.I3410V 0.26 benign(0.112) TCGA-DX-AB32-01 2 141474275 141474275 C A LRP1B Missense_Mutation p.G1957W 0.30 probably_damaging(0.965) TCGA-DX-AB32-01 2 174774931 174774931 T C SP3 Missense_Mutation p.H695R 0.28 deleterious(0) possibly_damaging(0.637) TCGA-DX-AB32-01 2 179469795 179469795 G A TTN Missense_Mutation p.R18037W 0.21 TCGA-DX-AB32-01 2 1796148 1796148 G A MYT1L Missense_Mutation p.A1120V 0.32 deleterious(0) probably_damaging(0.988) TCGA-DX-AB32-01 2 203991416 203991416 G A NBEAL1 Missense_Mutation p.R1012H 0.39 tolerated(0.22) benign(0.003) TCGA-DX-AB32-01 2 216288076 216288076 C T FN1 Missense_Mutation p.A464T 0.21 tolerated(0.06) probably_damaging(0.996) TCGA-DX-AB32-01 2 217315650 217315650 C T SMARCAL1 Missense_Mutation p.R645C 0.43 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 2 242615580 242615580 T C DTYMK Missense_Mutation p.T201A 0.52 tolerated(0.84) benign(0) TCGA-DX-AB32-01 2 44102440 44102440 C T ABCG8 Silent p.A548A 0.44 TCGA-DX-AB32-01 2 70486511 70486511 T C PCYOX1 Silent p.I44I 0.21 TCGA-DX-AB32-01 2 71012570 71012570 T A FIGLA Missense_Mutation p.I196F 0.25 tolerated(0.14) benign(0.005) TCGA-DX-AB32-01 2 73912108 73912108 T C ALMS1P RNA 0.16 TCGA-DX-AB32-01 2 74274592 74274592 G A TET3 Silent p.S381S 0.35 TCGA-DX-AB32-01 2 89975710 89975710 C T IGKV2D-30 Missense_Mutation p.L3F 0.26 tolerated(0.71) benign(0.003) TCGA-DX-AB32-01 2 96970557 96970557 C T SNRNP200 Missense_Mutation p.R32H 0.35 tolerated(0.06) benign(0.28) TCGA-DX-AB32-01 3 111769565 111769565 A G TMPRSS7 Missense_Mutation p.K254E 0.29 tolerated(0.32) benign(0.087) TCGA-DX-AB32-01 3 118621566 118621566 G A IGSF11 Missense_Mutation p.P366L 0.24 deleterious(0.02) benign(0.018) TCGA-DX-AB32-01 3 121132018 121132018 C T STXBP5L Missense_Mutation p.R1012C 0.28 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 3 124458975 124458975 C T UMPS Missense_Mutation p.R363W 0.30 deleterious(0) probably_damaging(0.983) TCGA-DX-AB32-01 3 126748378 126748378 C T PLXNA1 Silent p.Y1623Y 0.20 TCGA-DX-AB32-01 3 128291780 128291780 C T C3orf27 3'UTR 0.18 TCGA-DX-AB32-01 3 128990636 128990636 C T COPG1 Missense_Mutation p.R624C 0.42 deleterious(0.01) benign(0.003) TCGA-DX-AB32-01 3 139108396 139108396 T C COPB2 5'UTR 0.29 TCGA-DX-AB32-01 3 141499460 141499460 G A GRK7 Missense_Mutation p.R286H 0.33 deleterious(0.02) possibly_damaging(0.896) TCGA-DX-AB32-01 3 148558511 148558511 A G CPB1 Missense_Mutation p.Q104R 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-DX-AB32-01 3 148601470 148601470 G A CPA3 Silent p.T283T 0.21 TCGA-DX-AB32-01 3 14949168 14949168 C G FGD5 Missense_Mutation p.H1096D 0.13 deleterious(0.02) possibly_damaging(0.734) TCGA-DX-AB32-01 3 14949206 14949206 C T FGD5 Silent p.L1108L 0.11 TCGA-DX-AB32-01 3 15114863 15114863 C T ZFYVE20 3'UTR 0.06 TCGA-DX-AB32-01 3 160960405 160960405 A T NMD3 Silent p.I327I 0.30 TCGA-DX-AB32-01 3 165547451 165547451 C T BCHE Silent p.P457P 0.25 TCGA-DX-AB32-01 3 169525490 169525490 C T LRRC34 Missense_Mutation p.A89T 0.30 tolerated(0.24) benign(0.041) TCGA-DX-AB32-01 3 180680695 180680695 C T FXR1 Missense_Mutation p.R368C 0.26 deleterious(0) probably_damaging(0.984) TCGA-DX-AB32-01 3 185181425 185181425 C G MAP3K13 Missense_Mutation p.R456G 0.21 deleterious(0.01) benign(0.079) TCGA-DX-AB32-01 3 185407144 185407144 G A IGF2BP2 Missense_Mutation p.R226W 0.34 deleterious(0.04) probably_damaging(0.948) TCGA-DX-AB32-01 3 186450325 186450325 C T KNG1 Silent p.C264C 0.22 TCGA-DX-AB32-01 3 31871582 31871582 C T OSBPL10 Missense_Mutation p.A227T 0.27 tolerated(0.39) possibly_damaging(0.509) TCGA-DX-AB32-01 3 38136528 38136528 A G DLEC1 Missense_Mutation p.D693G 0.50 deleterious(0.01) benign(0.328) TCGA-DX-AB32-01 3 38524696 38524696 C T ACVR2B Missense_Mutation p.A471V 0.31 deleterious(0) probably_damaging(0.975) TCGA-DX-AB32-01 3 46730873 46730873 G T ALS2CL Missense_Mutation p.L20I 0.21 deleterious(0) probably_damaging(0.998) TCGA-DX-AB32-01 3 47281289 47281289 A G KIF9 Intron 0.27 TCGA-DX-AB32-01 3 48688438 48688438 G A CELSR3 Missense_Mutation p.S2086L 0.36 deleterious(0) probably_damaging(0.999) TCGA-DX-AB32-01 3 4888653 4888653 G A ITPR1 3'UTR 0.78 TCGA-DX-AB32-01 3 52554459 52554459 G A STAB1 Missense_Mutation p.R1848Q 0.45 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 3 88202575 88202575 C T C3orf38 Missense_Mutation p.T110M 0.73 deleterious(0.04) benign(0.071) TCGA-DX-AB32-01 4 100060216 100060216 T - ADH4 Frame_Shift_Del p.I116Sfs*13 0.27 TCGA-DX-AB32-01 4 10447632 10447632 C T ZNF518B Silent p.A107A 0.39 TCGA-DX-AB32-01 4 146686150 146686150 C T ZNF827 Missense_Mutation p.G1074S 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-DX-AB32-01 4 164394067 164394067 T C TKTL2 Missense_Mutation p.I274V 0.41 tolerated(0.5) benign(0.039) TCGA-DX-AB32-01 4 4411344 4411344 C T NSG1 Silent p.V97V 0.29 TCGA-DX-AB32-01 4 48569313 48569313 G A FRYL Nonsense_Mutation p.R1041* 0.25 TCGA-DX-AB32-01 4 57164406 57164406 G A KIAA1211 Missense_Mutation p.R4Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-DX-AB32-01 4 6602448 6602448 G A MAN2B2 Missense_Mutation p.V502I 0.39 tolerated(0.29) benign(0.258) TCGA-DX-AB32-01 4 69528859 69528859 T C UGT2B15 Splice_Site p.X292_splice 0.15 TCGA-DX-AB32-01 4 7055968 7055968 G A TADA2B Silent p.P150P 0.33 TCGA-DX-AB32-01 4 75040309 75040309 T C MTHFD2L Missense_Mutation p.L77P 0.24 tolerated(0.27) possibly_damaging(0.828) TCGA-DX-AB32-01 4 77065350 77065350 T C NUP54 Missense_Mutation p.T83A 0.25 tolerated(0.85) unknown(0) TCGA-DX-AB32-01 4 79420972 79420972 G T FRAS1 Silent p.G3071G 0.21 TCGA-DX-AB32-01 4 88998690 88998690 C T PKD2 3'UTR 0.33 TCGA-DX-AB32-01 5 140233432 140233432 G A PCDHA9 Intron 0.16 TCGA-DX-AB32-01 5 140235763 140235763 G A PCDHA10 Missense_Mutation p.V44M 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-DX-AB32-01 5 140769482 140769482 C T PCDHGB4 Silent p.P677P 0.33 TCGA-DX-AB32-01 5 141019123 141019123 G A RELL2 Missense_Mutation p.R137H 0.30 tolerated(0.18) benign(0.216) TCGA-DX-AB32-01 5 151202325 151202325 C T GLRA1 Missense_Mutation p.R428H 0.27 deleterious(0) possibly_damaging(0.741) TCGA-DX-AB32-01 5 154193507 154193507 G A LARP1 Missense_Mutation p.G971S 0.20 tolerated(0.11) benign(0.159) TCGA-DX-AB32-01 5 154396339 154396339 C T KIF4B Nonsense_Mutation p.R974* 0.29 TCGA-DX-AB32-01 5 156760419 156760419 A G CYFIP2 Missense_Mutation p.S758G 0.30 tolerated(0.54) benign(0.006) TCGA-DX-AB32-01 5 157182025 157182025 G A LSM11 Missense_Mutation p.R279H 0.26 tolerated(0.1) possibly_damaging(0.512) TCGA-DX-AB32-01 5 167552021 167552021 C T TENM2 Silent p.C725C 0.24 TCGA-DX-AB32-01 5 175386945 175386945 G A THOC3 3'UTR 0.16 TCGA-DX-AB32-01 5 176025084 176025084 C T GPRIN1 Silent p.P584P 0.20 TCGA-DX-AB32-01 5 177310858 177310858 C T RP11-423H2.1 RNA 0.13 TCGA-DX-AB32-01 5 38996934 38996934 C T RICTOR Missense_Mutation p.R148Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-DX-AB32-01 5 44811183 44811183 G A MRPS30 Missense_Mutation p.R225Q 0.29 deleterious(0.01) possibly_damaging(0.908) TCGA-DX-AB32-01 5 54603447 54603447 T C DHX29 5'UTR 0.36 TCGA-DX-AB32-01 5 78944893 78944893 C T PAPD4 Nonsense_Mutation p.R303* 0.31 TCGA-DX-AB32-01 6 106552838 106552838 G A PRDM1 Missense_Mutation p.R268H 0.19 tolerated(0.16) benign(0.002) TCGA-DX-AB32-01 6 107811746 107811746 G A SOBP 5'UTR 0.11 TCGA-DX-AB32-01 6 112393216 112393216 G A TUBE1 Silent p.S386S 0.20 TCGA-DX-AB32-01 6 119136219 119136219 G A MCM9 Missense_Mutation p.S1067L 0.44 tolerated_low_confidence(0.13) benign(0.006) TCGA-DX-AB32-01 6 119509656 119509656 G A MAN1A1 Missense_Mutation p.R545W 0.23 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 6 152826384 152826384 T C SYNE1 Missense_Mutation p.T244A 0.31 benign(0.003) TCGA-DX-AB32-01 6 155152087 155152087 G A SCAF8 Silent p.P724P 0.30 TCGA-DX-AB32-01 6 160201021 160201021 A G TCP1 Missense_Mutation p.V399A 0.12 deleterious(0.02) benign(0.238) TCGA-DX-AB32-01 6 27861357 27861357 T A HIST1H2BO Silent p.S39S 0.35 TCGA-DX-AB32-01 6 29323056 29323056 C T OR5V1 Missense_Mutation p.S306N 0.30 tolerated(0.45) benign(0.001) TCGA-DX-AB32-01 6 31856193 31856193 C T EHMT2 Missense_Mutation p.A486T 0.45 tolerated(0.07) possibly_damaging(0.482) TCGA-DX-AB32-01 6 44118302 44118302 C A TMEM63B Missense_Mutation p.L537M 0.33 deleterious(0) probably_damaging(0.977) TCGA-DX-AB32-01 6 5030298 5030298 C A RP11-428J1.5 RNA 0.62 TCGA-DX-AB32-01 6 7558370 7558370 A G DSP Missense_Mutation p.I99V 0.38 benign(0) TCGA-DX-AB32-01 6 86329023 86329023 G A SYNCRIP Missense_Mutation p.A374V 0.26 deleterious(0) probably_damaging(0.992) TCGA-DX-AB32-01 6 93967917 93967917 A G EPHA7 Silent p.G670G 0.33 TCGA-DX-AB32-01 7 100369534 100369534 G C ZAN Missense_Mutation p.Q1772H 0.14 unknown(0) TCGA-DX-AB32-01 7 129396821 129396821 A - NRF1 3'UTR 0.17 TCGA-DX-AB32-01 7 138305823 138305823 T G SVOPL Missense_Mutation p.I441L 0.16 deleterious(0.01) benign(0.394) TCGA-DX-AB32-01 7 138344683 138344683 C T SVOPL Silent p.S132S 0.30 TCGA-DX-AB32-01 7 139661752 139661752 C T TBXAS1 Missense_Mutation p.A332V 0.06 tolerated(0.13) benign(0.443) TCGA-DX-AB32-01 7 141364761 141364761 G A KIAA1147 Missense_Mutation p.P349L 0.29 tolerated(0.09) benign(0.151) TCGA-DX-AB32-01 7 141756717 141756717 A G MGAM Missense_Mutation p.E1223G 0.05 deleterious(0.01) possibly_damaging(0.754) TCGA-DX-AB32-01 7 148701072 148701072 G A PDIA4 Silent p.D584D 0.23 TCGA-DX-AB32-01 7 17369626 17369626 A C AHR Silent p.R167R 0.20 TCGA-DX-AB32-01 7 1885976 1885976 G A AC110781.3 Intron 0.30 TCGA-DX-AB32-01 7 21516784 21516784 C T SP4 Missense_Mutation p.T589M 0.22 tolerated(0.08) benign(0.271) TCGA-DX-AB32-01 7 27203097 27203097 C T HOXA9 3'UTR 0.07 TCGA-DX-AB32-01 7 30728894 30728894 C T CRHR2 Missense_Mutation p.G33R 0.23 tolerated_low_confidence(0.46) benign(0.01) TCGA-DX-AB32-01 7 5352432 5352432 G A TNRC18 Missense_Mutation p.A2697V 0.40 unknown(0) TCGA-DX-AB32-01 7 55087060 55087060 T C EGFR Splice_Site p.X30_splice 0.14 TCGA-DX-AB32-01 7 72418883 72418883 C T POM121 Silent p.H958H 0.23 TCGA-DX-AB32-01 7 74991273 74991273 C T STAG3L1 RNA 0.39 TCGA-DX-AB32-01 7 98988806 98988806 C T ARPC1B Missense_Mutation p.A238V 0.15 tolerated(0.51) benign(0.075) TCGA-DX-AB32-01 8 107764240 107764240 A - OXR1 3'Flank 0.42 TCGA-DX-AB32-01 8 110657587 110657587 T C SYBU Intron 0.33 TCGA-DX-AB32-01 8 120862621 120862621 C T DSCC1 Splice_Site p.X162_splice 0.26 TCGA-DX-AB32-01 8 124214732 124214732 T G FAM83A Intron 0.23 TCGA-DX-AB32-01 8 134266812 134266812 C T NDRG1 Silent p.P188P 0.30 TCGA-DX-AB32-01 8 143562626 143562626 C T BAI1 Nonsense_Mutation p.R614* 0.29 TCGA-DX-AB32-01 8 144732482 144732482 G T ZNF623 Missense_Mutation p.G147V 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-DX-AB32-01 8 145722812 145722812 G A PPP1R16A Missense_Mutation p.A79T 0.22 deleterious(0.05) possibly_damaging(0.867) TCGA-DX-AB32-01 8 17849059 17849059 G A PCM1 Missense_Mutation p.V1514M 0.26 deleterious(0) probably_damaging(1) TCGA-DX-AB32-01 8 21912500 21912500 A G DMTN 5'Flank 0.47 TCGA-DX-AB32-01 8 48878876 48878876 G A MCM4 Missense_Mutation p.R321H 0.46 deleterious(0.03) benign(0.261) TCGA-DX-AB32-01 8 56651890 56651890 G T TMEM68 3'UTR 0.32 TCGA-DX-AB32-01 8 82395393 82395393 C T FABP4 Missense_Mutation p.A4T 0.18 tolerated(0.15) benign(0.009) TCGA-DX-AB32-01 8 95504027 95504027 C T KIAA1429 Missense_Mutation p.R1640H 0.29 deleterious(0) probably_damaging(0.999) TCGA-DX-AB32-01 9 104187758 104187758 C T ALDOB Missense_Mutation p.R259H 0.22 deleterious(0.02) probably_damaging(0.976) TCGA-DX-AB32-01 9 105767654 105767654 A - CYLC2 Frame_Shift_Del p.D250Mfs*106 0.16 TCGA-DX-AB32-01 9 107581064 107581064 G T ABCA1 Silent p.S1114S 0.23 TCGA-DX-AB32-01 9 112900711 112900711 A C PALM2-AKAP2 Silent p.R963R 0.25 TCGA-DX-AB32-01 9 124535315 124535315 G A DAB2IP Silent p.A808A 0.38 TCGA-DX-AB32-01 9 13150632 13150632 G A MPDZ Nonsense_Mutation p.R1170* 0.29 TCGA-DX-AB32-01 9 135763753 135763753 C A C9orf9 Missense_Mutation p.P142T 0.25 deleterious(0) probably_damaging(0.969) TCGA-DX-AB32-01 9 140865850 140865850 G A CACNA1B Missense_Mutation p.R450H 0.36 deleterious(0.01) benign(0.144) TCGA-DX-AB32-01 9 18777457 18777457 G A ADAMTSL1 Missense_Mutation p.R1077H 0.37 deleterious(0) probably_damaging(0.978) TCGA-DX-AB32-01 9 21141119 21141119 G A IFNW1 Missense_Mutation p.R151C 0.29 tolerated(0.18) benign(0.059) TCGA-DX-AB32-01 9 35105196 35105196 C T FAM214B 3'UTR 0.38 TCGA-DX-AB32-01 9 35660635 35660635 T - CCDC107 Frame_Shift_Del p.F135Lfs*4 0.15 TCGA-DX-AB32-01 9 35744370 35744370 C T GBA2 Missense_Mutation p.R164H 0.22 deleterious(0) probably_damaging(0.999) TCGA-DX-AB32-01 9 39099915 39099915 G A CNTNAP3 Silent p.C996C 0.27 TCGA-DX-AB32-01 9 5233699 5233699 C T INSL4 Missense_Mutation p.T81M 0.47 tolerated(0.51) benign(0.001) TCGA-DX-AB32-01 9 72758568 72758568 C T MAMDC2 Missense_Mutation p.R413C 0.16 deleterious(0) benign(0.141) TCGA-DX-AB32-01 9 84228347 84228347 G A TLE1 Silent p.G336G 0.32 TCGA-DX-AB32-01 X 106843776 106843776 C T FRMPD3 Missense_Mutation p.P869L 0.58 tolerated_low_confidence(0.14) possibly_damaging(0.458) TCGA-DX-AB32-01 X 1407438 1407438 A G CSF2RA Silent p.T82T 0.31 TCGA-DX-AB32-01 X 151358337 151358337 C T GABRA3 Silent p.T336T 0.56 TCGA-DX-AB32-01 X 153596078 153596078 G A FLNA Silent p.D217D 0.55 TCGA-DX-AB32-01 X 73046604 73046604 T G XIST RNA 0.58 TCGA-DX-AB35-01 10 126311826 126311826 C A FAM53B Missense_Mutation p.Q418H 0.16 deleterious(0) probably_damaging(0.998) TCGA-DX-AB35-01 10 27827289 27827289 A G RAB18 3'UTR 0.53 TCGA-DX-AB35-01 10 96313980 96313980 C T HELLS Missense_Mutation p.T84M 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-DX-AB35-01 12 54117527 54117527 G A CALCOCO1 Silent p.F100F 0.24 TCGA-DX-AB35-01 12 57167823 57167823 G T HSD17B6 Nonsense_Mutation p.E63* 0.85 TCGA-DX-AB35-01 12 57167840 57167840 G T HSD17B6 Missense_Mutation p.Q68H 0.84 deleterious(0) possibly_damaging(0.776) TCGA-DX-AB35-01 12 57167862 57167862 A C HSD17B6 Silent p.R76R 0.87 TCGA-DX-AB35-01 12 57167910 57167910 G A HSD17B6 Missense_Mutation p.A92T 0.90 deleterious(0.04) benign(0.169) TCGA-DX-AB35-01 12 57919428 57919428 C T MBD6 Missense_Mutation p.S226L 0.33 deleterious_low_confidence(0) unknown(0) TCGA-DX-AB35-01 12 58159275 58159275 C T CYP27B1 Missense_Mutation p.E132K 0.24 tolerated(0.21) probably_damaging(0.921) TCGA-DX-AB35-01 12 66358555 66358555 C T HMGA2 3'UTR 0.36 TCGA-DX-AB35-01 12 69965212 69965212 C G FRS2 Missense_Mutation p.T137R 0.03 tolerated(0.1) benign(0.289) TCGA-DX-AB35-01 12 71016412 71016412 C T PTPRB Missense_Mutation p.E156K 0.42 deleterious_low_confidence(0.04) benign(0.108) TCGA-DX-AB35-01 12 75897849 75897849 T G KRR1 Missense_Mutation p.L222F 0.13 deleterious(0) probably_damaging(0.979) TCGA-DX-AB35-01 12 79985816 79985816 C T PAWR 3'UTR 0.12 TCGA-DX-AB35-01 15 33858928 33858928 G T RYR3 Missense_Mutation p.R399I 0.66 benign(0.101) TCGA-DX-AB35-01 15 33941420 33941420 G A RYR3 Missense_Mutation p.G1376S 0.30 probably_damaging(0.999) TCGA-DX-AB35-01 15 74429089 74429089 C A ISLR2 3'UTR 0.42 TCGA-DX-AB35-01 16 3254696 3254696 G T OR1F1 Silent p.V150V 0.40 TCGA-DX-AB35-01 16 70942292 70942292 C T HYDIN Silent p.T2753T 0.35 TCGA-DX-AB35-01 17 15441452 15441452 G C TVP23C Intron 0.10 TCGA-DX-AB35-01 17 15443775 15443775 G A TVP23C Intron 0.13 TCGA-DX-AB35-01 17 76420060 76420060 G A DNAH17 Missense_Mutation p.T4462I 0.17 possibly_damaging(0.813) TCGA-DX-AB35-01 18 28710374 28710374 G A DSC1 3'UTR 0.69 TCGA-DX-AB35-01 18 8831675 8831675 G A SOGA2 3'UTR 0.19 TCGA-DX-AB35-01 19 45525438 45525438 G A RELB Missense_Mutation p.R211Q 0.17 tolerated(0.2) possibly_damaging(0.82) TCGA-DX-AB35-01 1 118166888 118166888 G A FAM46C 3'UTR 0.43 TCGA-DX-AB35-01 1 22965616 22965616 G A C1QA Missense_Mutation p.V152I 0.14 tolerated(0.49) benign(0.003) TCGA-DX-AB35-01 1 75097467 75097467 G C C1orf173 Missense_Mutation p.S250C 0.42 tolerated(0.19) possibly_damaging(0.818) TCGA-DX-AB35-01 1 78044547 78044547 C T ZZZ3 Missense_Mutation p.S697N 0.41 deleterious(0.02) possibly_damaging(0.825) TCGA-DX-AB35-01 20 36032335 36032335 C T SRC 3'UTR 0.42 TCGA-DX-AB35-01 2 155555781 155555781 A T KCNJ3 Missense_Mutation p.Q165L 0.75 deleterious(0) probably_damaging(0.995) TCGA-DX-AB35-01 2 160112887 160112887 C T WDSUB1 Splice_Site p.X318_splice 0.36 TCGA-DX-AB35-01 2 220350080 220350080 G A SPEG Missense_Mutation p.S2541N 0.29 benign(0.064) TCGA-DX-AB35-01 3 130098262 130098262 T C COL6A5 Silent p.V223V 0.39 TCGA-DX-AB35-01 3 142025759 142025759 A G XRN1 3'UTR 0.26 TCGA-DX-AB35-01 3 196158957 196158957 T G UBXN7 Intron 0.21 TCGA-DX-AB35-01 3 51297624 51297624 G A DOCK3 Missense_Mutation p.R741Q 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-DX-AB35-01 4 367589 367589 G A ZNF141 Missense_Mutation p.D455N 0.07 deleterious(0.02) benign(0.038) TCGA-DX-AB35-01 4 37447518 37447518 T A KIAA1239 Missense_Mutation p.I1303K 0.21 deleterious(0.02) benign(0.075) TCGA-DX-AB35-01 5 63257295 63257295 C A HTR1A Missense_Mutation p.M84I 0.42 deleterious(0.01) possibly_damaging(0.779) TCGA-DX-AB35-01 6 146264415 146264415 A G SHPRH Missense_Mutation p.F701S 0.42 deleterious(0) probably_damaging(0.995) TCGA-DX-AB35-01 6 167413584 167413584 G C FGFR1OP Missense_Mutation p.E47Q 0.14 deleterious(0) possibly_damaging(0.824) TCGA-DX-AB35-01 6 311931 311931 C G DUSP22 Missense_Mutation p.S36C 0.18 deleterious(0) probably_damaging(1) TCGA-DX-AB35-01 6 32712940 32712940 C G HLA-DQA2 Missense_Mutation p.D29E 0.30 tolerated(0.13) probably_damaging(0.999) TCGA-DX-AB35-01 6 32712953 32712953 T A HLA-DQA2 Missense_Mutation p.Y34N 0.26 deleterious(0.01) probably_damaging(0.923) TCGA-DX-AB35-01 6 49427080 49427080 G A MUT Missense_Mutation p.H34Y 0.23 tolerated_low_confidence(0.33) benign(0) TCGA-DX-AB35-01 7 128394753 128394753 A T CALU Missense_Mutation p.N139I 0.23 deleterious(0.02) probably_damaging(0.974) TCGA-DX-AB35-01 7 134632457 134632457 G T CALD1 Missense_Mutation p.K577N 0.52 deleterious(0) unknown(0) TCGA-DX-AB35-01 7 71252869 71252869 T C CALN1 Missense_Mutation p.N226S 0.75 tolerated(0.89) possibly_damaging(0.762) TCGA-DX-AB35-01 8 27679890 27679890 A G PBK Silent p.P137P 0.06 TCGA-DX-AB35-01 8 70573138 70573141 TTTA - SULF1 3'UTR 0.40 TCGA-DX-AB35-01 9 4860199 4860199 A T RCL1 Missense_Mutation p.E349V 0.30 tolerated(0.07) benign(0.039) TCGA-DX-AB35-01 9 84608921 84608921 C T SPATA31D1 Missense_Mutation p.S1179F 0.35 deleterious(0) possibly_damaging(0.617) TCGA-DX-AB35-01 X 73961202 73961202 G A KIAA2022 Missense_Mutation p.R1064C 0.45 deleterious(0) probably_damaging(1) TCGA-DX-AB36-01 11 51516009 51516009 C T OR4C46 Missense_Mutation p.T243M 0.28 deleterious_low_confidence(0.02) benign(0.292) TCGA-DX-AB36-01 11 65793082 65793082 G A CATSPER1 Nonsense_Mutation p.Q257* 0.56 TCGA-DX-AB36-01 12 109863841 109863841 G A MYO1H Missense_Mutation p.D590N 0.05 tolerated(0.07) benign(0.002) TCGA-DX-AB36-01 12 58207134 58207134 G C AVIL Missense_Mutation p.Q72E 0.27 deleterious(0.05) possibly_damaging(0.639) TCGA-DX-AB36-01 12 58207180 58207180 G A AVIL Silent p.S56S 0.28 TCGA-DX-AB36-01 12 88547274 88547274 A G TMTC3 Missense_Mutation p.I132M 0.41 deleterious(0) possibly_damaging(0.813) TCGA-DX-AB36-01 15 50569832 50569832 G A GABPB1 3'UTR 0.56 TCGA-DX-AB36-01 16 27245549 27245549 G A NSMCE1 Missense_Mutation p.T99M 0.10 deleterious(0) possibly_damaging(0.833) TCGA-DX-AB36-01 17 17682439 17682442 ACAC - RAI1 Intron 0.50 TCGA-DX-AB36-01 17 18891589 18891589 G A FAM83G Missense_Mutation p.R221W 0.40 deleterious(0) possibly_damaging(0.874) TCGA-DX-AB36-01 19 39008174 39008174 C T RYR1 Silent p.R3287R 0.65 TCGA-DX-AB36-01 19 9015716 9015716 G C MUC16 Missense_Mutation p.L12703V 0.35 possibly_damaging(0.743) TCGA-DX-AB36-01 1 151546847 151546847 G A TUFT1 Silent p.L232L 0.12 TCGA-DX-AB36-01 1 237843759 237843759 G A RYR2 Missense_Mutation p.V2967I 0.32 benign(0.061) TCGA-DX-AB36-01 21 33947970 33947970 G A AP000275.65 3'Flank 0.36 TCGA-DX-AB36-01 22 38616981 38616981 G A TMEM184B 3'UTR 0.25 TCGA-DX-AB36-01 22 46782353 46782353 G A CELSR1 Missense_Mutation p.R2229C 0.18 deleterious(0) probably_damaging(0.953) TCGA-DX-AB36-01 2 166536009 166536009 G A CSRNP3 Missense_Mutation p.V502I 0.48 tolerated_low_confidence(0.27) probably_damaging(0.987) TCGA-DX-AB36-01 2 191765411 191765411 G T GLS Nonsense_Mutation p.G243* 0.17 TCGA-DX-AB36-01 2 73115591 73115591 C T SPR Silent p.T151T 0.50 TCGA-DX-AB36-01 3 112300024 112300024 A G SLC35A5 Missense_Mutation p.R354G 0.21 deleterious(0.01) benign(0.333) TCGA-DX-AB36-01 4 3534104 3534104 C T LRPAP1 Silent p.G12G 0.11 TCGA-DX-AB36-01 5 140232943 140232943 G A PCDHA9 Intron 0.50 TCGA-DX-AB36-01 6 111346637 111346637 C G RPF2 Missense_Mutation p.T258S 0.56 tolerated(0.44) benign(0.04) TCGA-DX-AB36-01 6 116381270 116381270 G A FRK Missense_Mutation p.L69F 0.52 tolerated(0.19) benign(0.438) TCGA-DX-AB36-01 6 133804184 133804184 G A EYA4 Nonsense_Mutation p.W374* 0.09 TCGA-DX-AB36-01 6 152697665 152697665 G A SYNE1 Nonsense_Mutation p.Q3059* 0.36 TCGA-DX-AB36-01 6 26508941 26508941 G A BTN1A1 Missense_Mutation p.V374M 0.37 deleterious(0) probably_damaging(1) TCGA-DX-AB36-01 6 37142522 37142522 C A PIM1 3'UTR 0.56 TCGA-DX-AB36-01 7 102096553 102096553 C A ORAI2 3'UTR 0.39 TCGA-DX-AB36-01 7 102097908 102097908 C T ALKBH4 Missense_Mutation p.G281E 0.47 deleterious(0) probably_damaging(0.977) TCGA-DX-AB36-01 7 150935155 150935155 G T CHPF2 Missense_Mutation p.E569D 0.29 tolerated(0.49) benign(0.028) TCGA-DX-AB36-01 7 155534680 155534680 C T RBM33 Silent p.S739S 0.19 TCGA-DX-AB36-01 7 95726883 95726883 G A DYNC1I1 Missense_Mutation p.G639D 0.19 tolerated(0.21) possibly_damaging(0.562) TCGA-DX-AB36-01 8 97622944 97622944 A G SDC2 3'UTR 0.23 TCGA-DX-AB36-01 9 111685148 111685148 T C IKBKAP Missense_Mutation p.R176G 0.33 deleterious(0) possibly_damaging(0.497) TCGA-DX-AB36-01 X 153036452 153036452 G A PLXNB3 Silent p.E746E 0.25 TCGA-DX-AB36-01 X 85282554 85282554 A C CHM Silent p.P19P 0.86 TCGA-DX-AB36-01 X 9862480 9862480 G A SHROOM2 Missense_Mutation p.V178I 0.75 tolerated(0.13) possibly_damaging(0.75) TCGA-DX-AB37-01 10 126524798 126524798 G T FAM175B 3'UTR 0.22 TCGA-DX-AB37-01 11 119999142 119999142 G A TRIM29 Missense_Mutation p.A289V 0.14 tolerated(1) benign(0.001) TCGA-DX-AB37-01 11 15993835 15993835 C T SOX6 3'UTR 0.23 TCGA-DX-AB37-01 11 32955585 32955585 C A QSER1 Silent p.L798L 0.19 TCGA-DX-AB37-01 11 4967847 4967847 G T OR51A4 Missense_Mutation p.P162T 0.21 deleterious(0) probably_damaging(0.973) TCGA-DX-AB37-01 11 62342591 62342591 G - TUT1 Frame_Shift_Del p.P905Lfs*17 0.28 TCGA-DX-AB37-01 12 30884415 30884415 A C CAPRIN2 Missense_Mutation p.L308V 0.19 tolerated(0.17) probably_damaging(0.993) TCGA-DX-AB37-01 12 49743370 49743370 C T DNAJC22 Missense_Mutation p.P239S 0.14 deleterious(0) probably_damaging(0.985) TCGA-DX-AB37-01 12 53458778 53458778 G T SPRYD3 3'UTR 0.43 TCGA-DX-AB37-01 12 7559146 7559146 C T CD163L1 Missense_Mutation p.V357M 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-DX-AB37-01 13 103343313 103343313 T A METTL21C Missense_Mutation p.E44D 0.20 tolerated(1) benign(0) TCGA-DX-AB37-01 13 103498672 103498672 C G ERCC5 Missense_Mutation p.P19R 0.27 deleterious(0) probably_damaging(0.997) TCGA-DX-AB37-01 13 99171640 99171655 TGTCAATGCCTTTGAA - STK24 Frame_Shift_Del p.F51Ifs*9 0.15 TCGA-DX-AB37-01 14 102368201 102368201 A C PPP2R5C Missense_Mutation p.K364T 0.30 deleterious(0) benign(0.364) TCGA-DX-AB37-01 14 105181035 105181035 C T INF2 Missense_Mutation p.T1179M 0.06 deleterious_low_confidence(0.01) benign(0.194) TCGA-DX-AB37-01 14 20482732 20482732 A T OR4K14 Silent p.L207L 0.26 TCGA-DX-AB37-01 15 30033627 30033627 C T TJP1 Silent p.V388V 0.09 TCGA-DX-AB37-01 15 41047037 41047037 G T RMDN3 5'UTR 0.12 TCGA-DX-AB37-01 15 49917320 49917320 A G DTWD1 5'UTR 0.08 TCGA-DX-AB37-01 15 89739932 89739932 G T ABHD2 3'UTR 0.25 TCGA-DX-AB37-01 16 27512569 27512569 C T GTF3C1 Silent p.E668E 0.20 TCGA-DX-AB37-01 16 56480573 56480573 C T NUDT21 Missense_Mutation p.D116N 0.23 tolerated(0.15) benign(0.149) TCGA-DX-AB37-01 16 69782853 69782853 C T NOB1 Missense_Mutation p.V232I 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-DX-AB37-01 16 69782876 69782876 C T NOB1 Missense_Mutation p.C224Y 0.27 tolerated(1) benign(0.001) TCGA-DX-AB37-01 16 69783471 69783471 C T NOB1 Silent p.L130L 0.26 TCGA-DX-AB37-01 16 82131683 82131683 T A HSD17B2 Missense_Mutation p.I269N 0.25 deleterious(0) probably_damaging(0.982) TCGA-DX-AB37-01 17 16342302 16342302 G A TRPV2 3'Flank 0.20 TCGA-DX-AB37-01 17 16342307 16342307 G T TRPV2 3'Flank 0.20 TCGA-DX-AB37-01 17 16342498 16342498 G A TRPV2 3'Flank 0.17 TCGA-DX-AB37-01 17 16342578 16342578 G A TRPV2 3'Flank 0.15 TCGA-DX-AB37-01 17 16342828 16342828 G A TRPV2 3'Flank 0.22 TCGA-DX-AB37-01 17 16343502 16343502 G A TRPV2 3'Flank 0.22 TCGA-DX-AB37-01 17 19866275 19866275 G C AKAP10 Missense_Mutation p.A66G 0.23 tolerated_low_confidence(0.11) probably_damaging(0.994) TCGA-DX-AB37-01 17 26696816 26696816 C T VTN Missense_Mutation p.G81S 0.53 tolerated(0.82) benign(0.002) TCGA-DX-AB37-01 17 74725851 74725851 C G METTL23 Missense_Mutation p.S20C 0.10 tolerated(0.06) benign(0.013) TCGA-DX-AB37-01 17 78272139 78272139 G A RNF213 Silent p.V677V 0.22 TCGA-DX-AB37-01 18 14538212 14538212 T A POTEC Silent p.S186S 0.52 TCGA-DX-AB37-01 18 24436262 24436262 T C AQP4 Silent p.K295K 0.21 TCGA-DX-AB37-01 18 30092568 30092568 T C WBP11P1 RNA 0.38 TCGA-DX-AB37-01 1 100661791 100661791 C A DBT 3'UTR 0.07 TCGA-DX-AB37-01 1 149914348 149914348 A T OTUD7B 3'UTR 0.22 TCGA-DX-AB37-01 1 155306144 155306144 A G ASH1L 3'UTR 0.05 TCGA-DX-AB37-01 1 160156148 160156148 C T ATP1A4 Missense_Mutation p.H1018Y 0.35 tolerated(1) benign(0.001) TCGA-DX-AB37-01 1 173556926 173556926 A T SLC9C2 Missense_Mutation p.I134K 0.44 deleterious(0.01) possibly_damaging(0.776) TCGA-DX-AB37-01 1 17531793 17531793 G A PADI1 Silent p.V27V 0.34 TCGA-DX-AB37-01 1 197128578 197128578 G A ZBTB41 Missense_Mutation p.P881S 0.34 tolerated_low_confidence(0.11) benign(0.014) TCGA-DX-AB37-01 1 197128821 197128821 G C ZBTB41 Missense_Mutation p.Q800E 0.27 tolerated(0.1) benign(0.004) TCGA-DX-AB37-01 1 224872522 224872522 C T CNIH3 Missense_Mutation p.R59C 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.851) TCGA-DX-AB37-01 1 36602390 36602390 C A TRAPPC3 3'UTR 0.08 TCGA-DX-AB37-01 1 75037175 75037175 C T C1orf173 Missense_Mutation p.E1407K 0.27 tolerated(0.06) possibly_damaging(0.795) TCGA-DX-AB37-01 20 5903399 5903399 G A CHGB Silent p.K203K 0.08 TCGA-DX-AB37-01 21 34003353 34003353 C T SYNJ1 Silent p.T1597T 0.22 TCGA-DX-AB37-01 22 22661524 22661524 A G BMS1P20 RNA 0.04 TCGA-DX-AB37-01 2 168101135 168101135 G T XIRP2 Missense_Mutation p.S1078I 0.14 benign(0.115) TCGA-DX-AB37-01 2 207175936 207175936 G T ZDBF2 Silent p.S2228S 0.13 TCGA-DX-AB37-01 2 21229754 21229754 A G APOB Missense_Mutation p.I3329T 0.16 possibly_damaging(0.821) TCGA-DX-AB37-01 2 215278901 215278901 A T VWC2L 5'UTR 0.44 TCGA-DX-AB37-01 3 100084273 100084273 G C TOMM70A 3'UTR 0.29 TCGA-DX-AB37-01 3 113850156 113850156 C A DRD3 Missense_Mutation p.R272I 0.15 tolerated(0.18) benign(0.001) TCGA-DX-AB37-01 3 121168204 121168204 C A POLQ Missense_Mutation p.D2408Y 0.25 deleterious(0) probably_damaging(0.981) TCGA-DX-AB37-01 3 129017344 129017344 G A HMCES Missense_Mutation p.D201N 0.17 tolerated(0.2) benign(0.327) TCGA-DX-AB37-01 3 135869166 135869166 A C MSL2 3'UTR 0.20 TCGA-DX-AB37-01 3 142405129 142405129 T A PLS1 Missense_Mutation p.S298T 0.20 deleterious(0) benign(0.23) TCGA-DX-AB37-01 3 182989698 182989698 T C B3GNT5 3'UTR 0.22 TCGA-DX-AB37-01 3 33135698 33135698 C A TMPPE 5'UTR 0.10 TCGA-DX-AB37-01 4 10566314 10566314 G C CLNK Missense_Mutation p.T127R 0.12 tolerated(0.52) benign(0.11) TCGA-DX-AB37-01 4 128635153 128635153 C A INTU Missense_Mutation p.N874K 0.20 tolerated(0.15) benign(0.062) TCGA-DX-AB37-01 4 134112673 134112673 G T PCDH10 3'UTR 0.13 TCGA-DX-AB37-01 4 36148956 36148956 C T ARAP2 Silent p.G1075G 0.14 TCGA-DX-AB37-01 4 70800429 70800429 G T CSN1S1 Splice_Site p.X35_splice 0.20 TCGA-DX-AB37-01 5 101834502 101834502 G C SLCO6A1 Nonsense_Mutation p.S16* 0.19 TCGA-DX-AB37-01 5 112178997 112178997 G A APC Missense_Mutation p.S2569N 0.37 probably_damaging(0.999) TCGA-DX-AB37-01 5 14368832 14368832 G A TRIO Missense_Mutation p.A964T 0.26 possibly_damaging(0.712) TCGA-DX-AB37-01 6 116440921 116440921 T A COL10A1 3'UTR 0.09 TCGA-DX-AB37-01 6 27276926 27276926 A C POM121L2 Silent p.S1008S 0.31 TCGA-DX-AB37-01 6 29455533 29455533 G A MAS1L Silent p.G49G 0.15 TCGA-DX-AB37-01 6 42979819 42979819 C T PPP2R5D 3'UTR 0.06 TCGA-DX-AB37-01 6 47626740 47626740 C A GPR111 Missense_Mutation p.T40K 0.07 deleterious_low_confidence(0.01) benign(0) TCGA-DX-AB37-01 6 85447068 85447068 G A TBX18 Missense_Mutation p.P387S 0.15 tolerated(1) benign(0.001) TCGA-DX-AB37-01 6 87943156 87943156 C T ZNF292 Missense_Mutation p.H218Y 0.23 tolerated(0.42) benign(0.336) TCGA-DX-AB37-01 7 103183261 103183261 G A RELN Silent p.I2196I 0.31 TCGA-DX-AB37-01 7 99490311 99490311 C A TRIM4 Silent p.G326G 0.33 TCGA-DX-AB37-01 8 11188715 11188715 T A SLC35G5 Missense_Mutation p.S34T 0.14 tolerated(0.24) benign(0.038) TCGA-DX-AB37-01 8 75227251 75227251 C T JPH1 Silent p.E328E 0.30 TCGA-DX-AB37-01 9 138380675 138380675 T A PPP1R26 3'UTR 0.12 TCGA-DX-AB37-01 9 139272917 139272917 G A SNAPC4 Missense_Mutation p.A1121V 0.12 tolerated(0.32) benign(0.002) TCGA-DX-AB37-01 9 71144604 71144604 A G PGM5 3'UTR 0.09 TCGA-DX-AB37-01 X 103495558 103495558 C A ESX1 Missense_Mutation p.R191I 0.50 deleterious(0) probably_damaging(0.928) TCGA-DX-AB37-01 X 69644894 69644894 C G GDPD2 Missense_Mutation p.S20R 0.25 deleterious(0) probably_damaging(0.979) TCGA-DX-AB37-01 X 70323071 70323071 G T FOXO4 3'UTR 0.29 TCGA-DX-AB37-01 X 73062636 73062636 A G XIST RNA 0.07 TCGA-DX-AB37-01 X 76874272 76874272 A T ATRX Splice_Site p.X1816_splice 0.25 TCGA-DX-AB3A-01 10 48370705 48370705 C G ZNF488 Missense_Mutation p.P58R 0.06 tolerated(0.41) benign(0.218) TCGA-DX-AB3A-01 12 118199117 118199117 C T KSR2 Missense_Mutation p.V229M 0.29 deleterious(0.03) possibly_damaging(0.813) TCGA-DX-AB3A-01 12 56486837 56486837 C T ERBB3 Silent p.T417T 0.45 TCGA-DX-AB3A-01 12 66358192 66358192 G A HMGA2 3'UTR 0.36 TCGA-DX-AB3A-01 12 73050729 73050729 A G TRHDE Missense_Mutation p.N958D 0.13 deleterious(0.01) probably_damaging(0.933) TCGA-DX-AB3A-01 12 85546891 85546891 G A LRRIQ1 Silent p.L1503L 0.95 TCGA-DX-AB3A-01 13 108885110 108885110 A T ABHD13 3'UTR 0.10 TCGA-DX-AB3A-01 14 104646007 104646007 C A KIF26A Silent p.A1843A 0.44 TCGA-DX-AB3A-01 14 107095431 107095431 C A IGHV4-61 Missense_Mutation p.V17F 0.39 deleterious(0) possibly_damaging(0.854) TCGA-DX-AB3A-01 14 21992685 21992685 G A SALL2 Missense_Mutation p.R393C 0.39 deleterious(0) probably_damaging(0.999) TCGA-DX-AB3A-01 15 62234079 62234079 G C VPS13C Missense_Mutation p.A1779G 0.11 deleterious(0.01) possibly_damaging(0.871) TCGA-DX-AB3A-01 17 58235772 58235772 G A CA4 Missense_Mutation p.V237M 0.16 deleterious(0) probably_damaging(0.999) TCGA-DX-AB3A-01 17 7536563 7536563 G A SHBG Missense_Mutation p.A368T 0.08 tolerated(0.08) benign(0.141) TCGA-DX-AB3A-01 19 19625031 19625031 G A TSSK6 3'UTR 0.80 TCGA-DX-AB3A-01 19 32899229 32899229 G C DPY19L3 Missense_Mutation p.E24Q 0.23 tolerated(0.17) benign(0.002) TCGA-DX-AB3A-01 19 41828652 41828652 C T CCDC97 3'UTR 0.31 TCGA-DX-AB3A-01 19 51650058 51650058 G A SIGLEC7 Missense_Mutation p.A359T 0.18 deleterious(0) probably_damaging(0.957) TCGA-DX-AB3A-01 19 55281331 55281331 G A KIR2DL1 Missense_Mutation p.C10Y 0.77 tolerated(0.19) possibly_damaging(0.73) TCGA-DX-AB3A-01 19 9071242 9071242 T A MUC16 Nonsense_Mutation p.R5402* 0.46 TCGA-DX-AB3A-01 1 156917189 156917189 T C ARHGEF11 Missense_Mutation p.I799V 0.36 tolerated(1) benign(0.008) TCGA-DX-AB3A-01 1 167757562 167757562 G A MPZL1 3'UTR 0.60 TCGA-DX-AB3A-01 1 234743418 234743418 T C IRF2BP2 Missense_Mutation p.N410S 0.60 tolerated(0.25) possibly_damaging(0.899) TCGA-DX-AB3A-01 1 248085156 248085156 C A OR2T8 Missense_Mutation p.F279L 0.13 tolerated(1) benign(0.107) TCGA-DX-AB3A-01 1 25291022 25291022 G T RUNX3 Nonsense_Mutation p.S14* 0.30 TCGA-DX-AB3A-01 1 29542523 29542523 C T MECR Missense_Mutation p.G134S 0.44 tolerated(0.05) benign(0.188) TCGA-DX-AB3A-01 22 22661489 22661489 C T BMS1P20 RNA 0.05 TCGA-DX-AB3A-01 22 42166717 42166717 C T MEI1 Silent p.L766L 0.60 TCGA-DX-AB3A-01 2 224824624 224824624 C T MRPL44 Missense_Mutation p.P185S 0.52 deleterious(0) probably_damaging(0.998) TCGA-DX-AB3A-01 2 33953017 33953017 G A AC009499.1 Intron 0.29 TCGA-DX-AB3A-01 2 75425694 75425698 TGGAG - TACR1 Frame_Shift_Del p.S122Dfs*6 0.44 TCGA-DX-AB3A-01 3 122598689 122598689 C T DIRC2 3'UTR 0.31 TCGA-DX-AB3A-01 3 131101009 131101009 C A NUDT16 Silent p.A86A 0.20 TCGA-DX-AB3A-01 3 15482557 15482557 G A EAF1 3'UTR 0.54 TCGA-DX-AB3A-01 3 160083847 160083847 T A IFT80 Missense_Mutation p.N178I 0.24 deleterious(0.02) possibly_damaging(0.55) TCGA-DX-AB3A-01 3 24169081 24169081 G A THRB Silent p.D351D 0.42 TCGA-DX-AB3A-01 5 176942195 176942195 G A DDX41 Silent p.I212I 0.22 TCGA-DX-AB3A-01 5 96358015 96358015 T G LNPEP Missense_Mutation p.F796L 0.29 tolerated(1) benign(0.002) TCGA-DX-AB3A-01 6 111498746 111498746 A C SLC16A10 Missense_Mutation p.K274Q 0.33 tolerated(0.68) benign(0.094) TCGA-DX-AB3A-01 6 55956320 55956320 T C COL21A1 Intron 0.35 TCGA-DX-AB3A-01 6 90637376 90637376 T C BACH2 3'UTR 0.38 TCGA-DX-AB3A-01 7 143095499 143095499 G A EPHA1 Missense_Mutation p.P460L 0.29 tolerated(0.11) probably_damaging(0.95) TCGA-DX-AB3A-01 7 20739461 20739461 A G ABCB5 Missense_Mutation p.N723S 0.11 tolerated(0.86) benign(0.039) TCGA-DX-AB3A-01 7 89854616 89854616 G T STEAP2 Missense_Mutation p.V74L 0.45 deleterious(0.01) possibly_damaging(0.688) TCGA-DX-AB3A-01 8 10755034 10755034 T A XKR6 3'UTR 0.29 TCGA-DX-AB3A-01 8 107764281 107764281 C G OXR1 3'Flank 0.46 TCGA-DX-AB3A-01 8 144658270 144658270 G A NAPRT1 Missense_Mutation p.A362V 0.35 tolerated(0.18) benign(0.009) TCGA-DX-AB3A-01 8 144992885 144992910 GCCTGGAACCGGGCAGGTAGACACCA - PLEC Frame_Shift_Del p.G3831Dfs*44 0.33 TCGA-DX-AB3A-01 9 125865902 125865902 A G RABGAP1 3'UTR 0.50 TCGA-DX-AB3A-01 9 37441579 37441579 G T ZBTB5 Missense_Mutation p.H324N 0.25 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-DX-AB3A-01 9 72071280 72071280 C T APBA1 Silent p.L557L 0.38 TCGA-DX-AB3A-01 9 88886927 88886943 TGAATAACTTCTTCATC GATGA ISCA1 In_Frame_Del p.D74_Q79delinsSS 0.37 TCGA-DX-AB3A-01 X 76937678 76937678 C A ATRX Nonsense_Mutation p.E1024* 1.00 TCGA-DX-AB3B-01 10 51585393 51585393 C T NCOA4 Missense_Mutation p.L514F 0.48 deleterious(0.04) probably_damaging(0.999) TCGA-DX-AB3B-01 10 75407274 75407274 C A SYNPO2L Missense_Mutation p.K712N 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-DX-AB3B-01 11 34194817 34194817 G A ABTB2 Missense_Mutation p.R428C 0.22 deleterious(0) possibly_damaging(0.643) TCGA-DX-AB3B-01 12 52162854 52162854 A C SCN8A Missense_Mutation p.E1036A 0.15 tolerated(0.25) possibly_damaging(0.497) TCGA-DX-AB3B-01 13 111114646 111114646 T C COL4A2 Missense_Mutation p.V564A 0.11 benign(0.105) TCGA-DX-AB3B-01 14 24900739 24900739 T A KHNYN Missense_Mutation p.I91N 0.33 deleterious(0) possibly_damaging(0.837) TCGA-DX-AB3B-01 14 42356845 42356845 C T LRFN5 Silent p.N339N 0.07 TCGA-DX-AB3B-01 14 70839377 70839377 C G SYNJ2BP 3'UTR 0.18 TCGA-DX-AB3B-01 15 42302375 42302375 G A PLA2G4E Intron 0.11 TCGA-DX-AB3B-01 15 42479973 42479973 C T VPS39 Missense_Mutation p.E142K 0.09 tolerated(0.65) benign(0.003) TCGA-DX-AB3B-01 16 31501432 31501432 G A SLC5A2 Missense_Mutation p.R558H 0.08 deleterious(0.02) possibly_damaging(0.863) TCGA-DX-AB3B-01 17 17750814 17750814 C T TOM1L2 3'UTR 0.07 TCGA-DX-AB3B-01 18 7015825 7015825 C A LAMA1 Missense_Mutation p.D1008Y 0.12 deleterious(0) probably_damaging(0.975) TCGA-DX-AB3B-01 19 49399789 49399789 G C TULP2 Missense_Mutation p.R37G 0.23 deleterious(0) probably_damaging(0.999) TCGA-DX-AB3B-01 1 165171678 165171678 G T LMX1A 3'UTR 0.18 TCGA-DX-AB3B-01 20 62329763 62329763 C T TNFRSF6B Silent p.R250R 0.25 TCGA-DX-AB3B-01 22 19429452 19429452 G T C22orf39 3'UTR 0.25 TCGA-DX-AB3B-01 22 23980848 23980848 G A GUSBP11 RNA 0.23 TCGA-DX-AB3B-01 2 166245201 166245201 C T SCN2A Missense_Mutation p.R1629C 0.15 deleterious(0) probably_damaging(0.961) TCGA-DX-AB3B-01 2 180307039 180307039 A G ZNF385B 3'UTR 0.48 TCGA-DX-AB3B-01 2 190660493 190660495 AGG - PMS1 Splice_Site p.X45_splice 0.10 TCGA-DX-AB3B-01 2 231109717 231109717 T C SP140 Missense_Mutation p.S196P 0.38 deleterious(0.03) probably_damaging(0.931) TCGA-DX-AB3B-01 2 54482087 54482087 A G TSPYL6 Missense_Mutation p.I401T 0.38 tolerated(1) benign(0.245) TCGA-DX-AB3B-01 3 129290655 129290655 G A PLXND1 Missense_Mutation p.P1037L 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-DX-AB3B-01 3 42700593 42700593 C T ZBTB47 Missense_Mutation p.T249M 0.12 deleterious(0) probably_damaging(0.976) TCGA-DX-AB3B-01 3 42984102 42984102 G A KRBOX1 Missense_Mutation p.R117Q 0.10 tolerated_low_confidence(0.95) benign(0) TCGA-DX-AB3B-01 4 1231417 1231417 C T CTBP1 Intron 0.11 TCGA-DX-AB3B-01 4 15069348 15069348 T C CPEB2 3'UTR 0.16 TCGA-DX-AB3B-01 4 39482041 39482041 C T LIAS 3'Flank 0.13 TCGA-DX-AB3B-01 5 140559150 140559150 G A PCDHB8 Missense_Mutation p.G512D 0.05 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-DX-AB3B-01 5 151170505 151170505 G A G3BP1 Missense_Mutation p.R78H 0.16 deleterious(0.03) benign(0.001) TCGA-DX-AB3B-01 6 25777120 25777120 C T SLC17A4 Silent p.L401L 0.24 TCGA-DX-AB3B-01 6 26045798 26045798 C T HIST1H3C Missense_Mutation p.R54C 0.18 tolerated_low_confidence(0.15) benign(0.329) TCGA-DX-AB3B-01 6 28358731 28358731 C G ZSCAN12 Missense_Mutation p.E446Q 0.17 deleterious(0.02) benign(0.033) TCGA-DX-AB3B-01 6 73933539 73933539 G T KHDC1L Silent p.R107R 0.33 TCGA-DX-AB3B-01 7 116960808 116960808 G A WNT2 Silent p.C41C 0.40 TCGA-DX-AB3B-01 7 151833996 151833996 T G KMT2C Missense_Mutation p.Y4886S 0.13 probably_damaging(1) TCGA-DX-AB3B-01 8 141461086 141461086 G A TRAPPC9 Silent p.R227R 0.13 TCGA-DX-AB3B-01 8 37696483 37696483 G A GPR124 Missense_Mutation p.A757T 0.17 tolerated(0.59) benign(0.003) TCGA-DX-AB3B-01 9 72131055 72131055 C G APBA1 Missense_Mutation p.E358Q 0.42 tolerated(0.08) probably_damaging(0.998) TCGA-DX-AB3B-01 9 86618737 86618737 G A RMI1 3'UTR 0.26 TCGA-DX-AB3B-01 X 137713997 137713997 C A FGF13 3'Flank 0.15 TCGA-DX-AB3B-01 X 153248440 153248440 C T TMEM187 3'UTR 0.17 TCGA-DX-AB3B-01 X 32328228 32328228 C A DMD Missense_Mutation p.D2030Y 0.32 probably_damaging(0.934) TCGA-DX-AB3C-01 10 15145497 15145497 G T RPP38 Missense_Mutation p.D62Y 0.18 deleterious(0.05) probably_damaging(0.943) TCGA-DX-AB3C-01 11 58385039 58385039 C A ZFP91 Silent p.R525R 0.57 TCGA-DX-AB3C-01 14 69555931 69555931 C A DCAF5 Intron 0.12 TCGA-DX-AB3C-01 15 76496967 76496967 T C C15orf27 3'UTR 0.59 TCGA-DX-AB3C-01 16 65397135 65397135 T G LINC00922 RNA 0.55 TCGA-DX-AB3C-01 16 79631592 79631594 AAC - MAF Intron 0.39 TCGA-DX-AB3C-01 17 18045519 18045519 C T MYO15A Missense_Mutation p.R1926C 0.08 unknown(0) TCGA-DX-AB3C-01 17 4805258 4805258 A G CHRNE Missense_Mutation p.F157L 0.05 deleterious(0.02) possibly_damaging(0.74) TCGA-DX-AB3C-01 18 13682040 13682040 C T FAM210A Missense_Mutation p.A13T 0.15 tolerated_low_confidence(0.13) benign(0.025) TCGA-DX-AB3C-01 18 25531601 25531601 A T CDH2 3'UTR 0.07 TCGA-DX-AB3C-01 18 30554563 30554563 G A CCDC178 Missense_Mutation p.A824V 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-DX-AB3C-01 1 151220563 151220563 G A PIP5K1A 3'Flank 0.13 TCGA-DX-AB3C-01 1 161049595 161049595 C T PVRL4 Missense_Mutation p.G75D 0.44 tolerated(0.28) benign(0.008) TCGA-DX-AB3C-01 1 202986939 202986939 C T TMEM183A Intron 0.62 TCGA-DX-AB3C-01 1 34057893 34057893 G T CSMD2 Intron 0.25 TCGA-DX-AB3C-01 20 644448 644448 G A SCRT2 Missense_Mutation p.A264V 0.33 deleterious(0.04) benign(0.444) TCGA-DX-AB3C-01 21 31709442 31709442 T G KRTAP27-1 Missense_Mutation p.E182A 0.08 tolerated(0.12) benign(0.248) TCGA-DX-AB3C-01 21 45658341 45658341 G A ICOSLG Silent p.S15S 0.50 TCGA-DX-AB3C-01 22 29951879 29951879 G T NIPSNAP1 3'UTR 0.30 TCGA-DX-AB3C-01 22 43089043 43089043 C T A4GALT Silent p.P305P 0.07 TCGA-DX-AB3C-01 2 102851712 102851712 G A IL1RL2 Silent p.Q551Q 0.11 TCGA-DX-AB3C-01 2 192814793 192814793 A T TMEFF2 3'UTR 0.38 TCGA-DX-AB3C-01 2 201457886 201457886 C T AOX1 Silent p.V21V 0.42 TCGA-DX-AB3C-01 2 208866481 208866481 C T PLEKHM3 5'UTR 0.47 TCGA-DX-AB3C-01 3 15112021 15112021 G T ZFYVE20 3'UTR 0.18 TCGA-DX-AB3C-01 4 151829835 151829835 A T LRBA Missense_Mutation p.S446T 0.51 tolerated(0.38) probably_damaging(0.983) TCGA-DX-AB3C-01 4 56458323 56458323 C T PDCL2 5'UTR 0.41 TCGA-DX-AB3C-01 7 123143075 123143075 C A IQUB Nonsense_Mutation p.E264* 0.11 TCGA-DX-AB3C-01 7 134701854 134701854 C T AGBL3 Missense_Mutation p.T121M 0.07 tolerated(0.24) benign(0.006) TCGA-DX-AB3C-01 9 133738153 133738156 TACG - ABL1 Frame_Shift_Del p.Y204Sfs*59 0.54 TCGA-DX-AB3C-01 9 17394809 17394809 A T CNTLN Missense_Mutation p.N786I 0.36 deleterious(0.01) possibly_damaging(0.757) TCGA-DX-AB3C-01 9 86518547 86518547 C T KIF27 Missense_Mutation p.A296T 0.44 deleterious(0.02) possibly_damaging(0.483) TCGA-DX-AB3C-01 X 48317079 48317079 C T SLC38A5 3'UTR 0.25 TCGA-FX-A2QS-01 10 104174766 104174766 G T PSD Silent p.G326G 0.29 TCGA-FX-A2QS-01 10 134686254 134686254 G A TTC40 Silent p.P1479P 0.12 TCGA-FX-A2QS-01 10 14560754 14560754 T C FAM107B 3'UTR 0.67 TCGA-FX-A2QS-01 10 24810764 24810764 G C KIAA1217 Missense_Mutation p.E788Q 0.47 deleterious(0) probably_damaging(0.998) TCGA-FX-A2QS-01 10 96495187 96495187 T G CYP2C18 Missense_Mutation p.F487V 0.30 tolerated(0.23) probably_damaging(0.985) TCGA-FX-A2QS-01 11 120008625 120008625 C T TRIM29 Missense_Mutation p.D39N 0.23 tolerated_low_confidence(0.05) benign(0.043) TCGA-FX-A2QS-01 11 132289055 132289055 G T OPCML 3'UTR 0.31 TCGA-FX-A2QS-01 11 18231484 18231484 G A RP11-113D6.10 Silent p.R90R 0.25 TCGA-FX-A2QS-01 11 26681890 26681890 G C ANO3 Missense_Mutation p.E949Q 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-FX-A2QS-01 12 10332200 10332200 G A TMEM52B Missense_Mutation p.R4Q 0.08 tolerated_low_confidence(0.38) benign(0.001) TCGA-FX-A2QS-01 12 110888066 110888066 C A ARPC3 5'UTR 0.29 TCGA-FX-A2QS-01 12 117710226 117710226 G A NOS1 Silent p.R601R 0.21 TCGA-FX-A2QS-01 12 133732210 133732212 AGA - CTD-2140B24.4 In_Frame_Del p.E128del 0.37 TCGA-FX-A2QS-01 12 18477970 18477970 C A PIK3C2G Missense_Mutation p.Q404K 0.25 tolerated(0.07) benign(0.005) TCGA-FX-A2QS-01 12 53228026 53228026 G A KRT79 Missense_Mutation p.R7W 0.33 deleterious(0) possibly_damaging(0.53) TCGA-FX-A2QS-01 12 57600488 57600488 C T LRP1 Silent p.H3941H 0.26 TCGA-FX-A2QS-01 12 58008522 58008522 C T ARHGEF25 Silent p.I328I 0.08 TCGA-FX-A2QS-01 12 58152074 58152074 G C MARCH9 Missense_Mutation p.V233L 0.05 tolerated(0.11) probably_damaging(0.975) TCGA-FX-A2QS-01 12 65130838 65130838 G A GNS Silent p.I348I 0.87 TCGA-FX-A2QS-01 12 65130858 65130858 G A GNS Nonsense_Mutation p.Q342* 0.87 TCGA-FX-A2QS-01 12 81111197 81111197 C T MYF5 Missense_Mutation p.P119S 0.16 deleterious(0) probably_damaging(1) TCGA-FX-A2QS-01 13 84452472 84452472 C T SLITRK1 3'UTR 0.15 TCGA-FX-A2QS-01 14 19378392 19378392 T A OR11H12 Missense_Mutation p.Y267N 0.80 deleterious(0) probably_damaging(0.997) TCGA-FX-A2QS-01 14 23389819 23389819 G A PRMT5 3'UTR 0.17 TCGA-FX-A2QS-01 15 102516467 102516467 T A WASH3P 3'Flank 0.08 TCGA-FX-A2QS-01 15 54306133 54306133 A G UNC13C Missense_Mutation p.K345E 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-FX-A2QS-01 15 66599178 66599178 C T DIS3L Nonsense_Mutation p.R104* 0.34 TCGA-FX-A2QS-01 16 3065590 3065590 G A CLDN6 Missense_Mutation p.R145W 0.27 deleterious(0) possibly_damaging(0.796) TCGA-FX-A2QS-01 16 766992 766992 G A METRN Missense_Mutation p.V189I 0.28 deleterious(0) probably_damaging(0.961) TCGA-FX-A2QS-01 17 42148538 42148538 C G G6PC3 Missense_Mutation p.L69V 0.34 tolerated(0.21) possibly_damaging(0.615) TCGA-FX-A2QS-01 17 51901724 51901724 T C KIF2B Missense_Mutation p.S444P 0.32 deleterious(0) probably_damaging(0.999) TCGA-FX-A2QS-01 17 56355490 56355490 G A MPO Missense_Mutation p.P301L 0.14 deleterious(0) probably_damaging(0.998) TCGA-FX-A2QS-01 17 76968782 76968783 - GTAC LGALS3BP Frame_Shift_Ins p.F212Vfs*8 0.35 TCGA-FX-A2QS-01 18 47500968 47500968 T C MYO5B Silent p.L358L 0.27 TCGA-FX-A2QS-01 18 5232937 5232937 C T RP11-835E18.5 RNA 0.27 TCGA-FX-A2QS-01 18 61070983 61070983 T C VPS4B Silent p.K147K 0.28 TCGA-FX-A2QS-01 19 10747106 10747106 C G SLC44A2 Missense_Mutation p.I447M 0.09 tolerated(0.06) possibly_damaging(0.695) TCGA-FX-A2QS-01 19 17881328 17881328 G A FCHO1 Missense_Mutation p.R144H 0.29 deleterious(0) possibly_damaging(0.839) TCGA-FX-A2QS-01 19 39075732 39075732 C T RYR1 Silent p.I4932I 0.23 TCGA-FX-A2QS-01 19 54756803 54756803 C T LILRB5 Missense_Mutation p.V469I 0.18 tolerated(0.75) benign(0.005) TCGA-FX-A2QS-01 19 54760201 54760201 G A LILRB5 Silent p.F120F 0.36 TCGA-FX-A2QS-01 19 9048510 9048510 C A MUC16 Missense_Mutation p.V11041L 0.32 benign(0.007) TCGA-FX-A2QS-01 1 101704603 101704603 C T S1PR1 Silent p.N21N 0.38 TCGA-FX-A2QS-01 1 14107394 14107394 C T PRDM2 Missense_Mutation p.P1035L 0.28 unknown(0) TCGA-FX-A2QS-01 1 14107396 14107396 C T PRDM2 Missense_Mutation p.P1036S 0.28 unknown(0) TCGA-FX-A2QS-01 1 145366987 145366987 C G NBPF10 Missense_Mutation p.L3433V 0.29 probably_damaging(0.983) TCGA-FX-A2QS-01 1 152286448 152286448 C T FLG Missense_Mutation p.G305E 0.04 probably_damaging(0.998) TCGA-FX-A2QS-01 1 152286590 152286590 C T FLG Missense_Mutation p.E258K 0.04 benign(0.352) TCGA-FX-A2QS-01 1 179961245 179961245 C G CEP350 Missense_Mutation p.S95C 0.10 benign(0.005) TCGA-FX-A2QS-01 1 236142371 236142371 C T NID1 Silent p.K1182K 0.44 TCGA-FX-A2QS-01 1 89732799 89732799 T A GBP5 Missense_Mutation p.N156Y 0.32 deleterious(0) benign(0.317) TCGA-FX-A2QS-01 20 22565030 22565030 G T FOXA2 5'UTR 0.44 TCGA-FX-A2QS-01 20 23421108 23421108 T A CSTL1 Silent p.I68I 0.07 TCGA-FX-A2QS-01 20 50235531 50235531 G - ATP9A Frame_Shift_Del p.H723Mfs*33 0.32 TCGA-FX-A2QS-01 21 41719729 41719729 C T DSCAM Missense_Mutation p.V360M 0.42 tolerated(0.21) probably_damaging(0.951) TCGA-FX-A2QS-01 21 43557666 43557666 T A UMODL1 Missense_Mutation p.M1426K 0.47 tolerated(1) possibly_damaging(0.519) TCGA-FX-A2QS-01 2 128350513 128350513 C T MYO7B Missense_Mutation p.R713W 0.35 tolerated(0.09) probably_damaging(0.912) TCGA-FX-A2QS-01 2 179188982 179188982 G A OSBPL6 Missense_Mutation p.V61I 0.16 tolerated(0.44) benign(0.001) TCGA-FX-A2QS-01 2 179438310 179438310 C A TTN Missense_Mutation p.K24183N 0.36 TCGA-FX-A2QS-01 2 179596646 179596646 G C TTN Nonsense_Mutation p.Y5652* 0.37 TCGA-FX-A2QS-01 2 203942512 203942512 T G NBEAL1 Silent p.L212L 0.17 TCGA-FX-A2QS-01 2 220074953 220074953 G A ABCB6 Nonsense_Mutation p.R807* 0.35 TCGA-FX-A2QS-01 2 220353597 220353597 G A SPEG Silent p.T2708T 0.27 TCGA-FX-A2QS-01 2 30454435 30454435 A G LBH 5'UTR 0.32 TCGA-FX-A2QS-01 2 32903922 32903922 G A TTC27 Splice_Site p.X351_splice 0.06 TCGA-FX-A2QS-01 2 84861702 84861702 C T DNAH6 Silent p.D1530D 0.20 TCGA-FX-A2QS-01 3 11080710 11080711 - A SLC6A1 3'UTR 0.13 TCGA-FX-A2QS-01 3 111651219 111651219 A C PHLDB2 Missense_Mutation p.E702A 0.54 deleterious(0.05) benign(0.263) TCGA-FX-A2QS-01 3 111849257 111849257 A G GCSAM Intron 0.24 TCGA-FX-A2QS-01 3 195512151 195512151 G A MUC4 Silent p.T2100T 0.21 TCGA-FX-A2QS-01 3 50316525 50316525 T G LSMEM2 5'UTR 0.31 TCGA-FX-A2QS-01 3 9055464 9055464 C T SRGAP3 Missense_Mutation p.V626M 0.34 deleterious(0) possibly_damaging(0.469) TCGA-FX-A2QS-01 4 3257929 3257930 CT - MSANTD1 3'UTR 0.18 TCGA-FX-A2QS-01 5 156769222 156769222 G A FNDC9 3'UTR 0.25 TCGA-FX-A2QS-01 5 169532965 169532965 A C FOXI1 Missense_Mutation p.S2R 0.08 deleterious(0) probably_damaging(0.997) TCGA-FX-A2QS-01 5 40998776 40998776 G T MROH2B Missense_Mutation p.A1530D 0.33 tolerated(0.06) benign(0.187) TCGA-FX-A2QS-01 6 29764977 29764977 G A HLA-V RNA 0.34 TCGA-FX-A2QS-01 6 37182996 37182996 C T TMEM217 Missense_Mutation p.R223K 0.07 deleterious_low_confidence(0) benign(0.001) TCGA-FX-A2QS-01 7 142008673 142008673 A T TRBV3-1 Missense_Mutation p.D49V 0.22 deleterious(0) probably_damaging(0.936) TCGA-FX-A2QS-01 7 30563988 30563988 C G RP4-777O23.2 5'Flank 0.02 TCGA-FX-A2QS-01 7 30564021 30564021 C G RP4-777O23.2 5'Flank 0.02 TCGA-FX-A2QS-01 7 35840675 35840675 G A SEPT7 5'UTR 0.11 TCGA-FX-A2QS-01 7 5254196 5254196 G C WIPI2 Missense_Mutation p.R81T 0.16 deleterious(0.02) probably_damaging(0.969) TCGA-FX-A2QS-01 7 87514432 87514432 C G DBF4 Missense_Mutation p.H120D 0.38 deleterious(0.02) benign(0.067) TCGA-FX-A2QS-01 8 110573152 110573152 T G EBAG9 Missense_Mutation p.V172G 0.07 deleterious(0) probably_damaging(0.931) TCGA-FX-A2QS-01 9 71869131 71869132 - C TJP2 Frame_Shift_Ins p.E1172* 0.16 TCGA-FX-A2QS-01 9 77676343 77676343 C G NMRK1 3'UTR 0.15 TCGA-FX-A2QS-01 9 77676433 77676433 C T NMRK1 3'UTR 0.22 TCGA-FX-A2QS-01 9 90388540 90388540 C G CTSL3P RNA 0.25 TCGA-FX-A2QS-01 X 119660233 119660233 C G CUL4B 3'Flank 0.04 TCGA-FX-A2QS-01 X 119660540 119660540 C G CUL4B 3'UTR 0.06 TCGA-FX-A2QS-01 X 53262756 53262756 G A IQSEC2 3'UTR 0.29 TCGA-FX-A2QS-01 X 53262974 53262974 G A IQSEC2 3'UTR 0.28 TCGA-FX-A3NJ-01 10 124800090 124800090 T G ACADSB Missense_Mutation p.F138V 0.77 tolerated(0.2) benign(0.005) TCGA-FX-A3NJ-01 10 61833769 61833769 C G ANK3 Silent p.L2290L 0.20 TCGA-FX-A3NJ-01 11 56569579 56569579 G A OR5G5P RNA 0.17 TCGA-FX-A3NJ-01 11 62543260 62543260 C T TAF6L Missense_Mutation p.S2L 0.34 deleterious_low_confidence(0.01) benign(0.122) TCGA-FX-A3NJ-01 11 87846974 87846990 ATGGTGAGGAAAGCATA - RAB38 3'UTR 0.39 TCGA-FX-A3NJ-01 12 107395061 107395061 T A CRY1 Missense_Mutation p.R227S 0.33 deleterious(0.04) benign(0.119) TCGA-FX-A3NJ-01 12 306031 306031 T C SLC6A12 Missense_Mutation p.I365V 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-FX-A3NJ-01 14 94756550 94756567 CCCTCTCTTGATCTGGGT - SERPINA10 In_Frame_Del p.T122_G127del 0.50 TCGA-FX-A3NJ-01 15 100347042 100347042 A G CTD-2054N24.2 5'Flank 0.26 TCGA-FX-A3NJ-01 17 33513903 33513903 T C UNC45B 3'UTR 0.05 TCGA-FX-A3NJ-01 19 11708357 11708357 G A ZNF627 5'UTR 0.58 TCGA-FX-A3NJ-01 19 13207482 13207482 A C NFIX 3'Flank 0.60 TCGA-FX-A3NJ-01 19 41352937 41352937 G A CYP2A6 Missense_Mutation p.S225L 0.05 probably_damaging(0.923) TCGA-FX-A3NJ-01 1 153734135 153734135 C G INTS3 Missense_Mutation p.P500R 0.32 deleterious(0.03) benign(0.154) TCGA-FX-A3NJ-01 1 192778205 192778205 C T RGS2 Nonsense_Mutation p.Q2* 0.19 TCGA-FX-A3NJ-01 1 231411035 231411035 C T GNPAT Silent p.V604V 0.44 TCGA-FX-A3NJ-01 1 242253161 242253161 C G PLD5 Missense_Mutation p.V536L 0.52 deleterious_low_confidence(0.05) benign(0.209) TCGA-FX-A3NJ-01 22 17590484 17590484 C A IL17RA Missense_Mutation p.S792Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-FX-A3NJ-01 22 19839506 19839506 C T C22orf29 Silent p.R93R 0.62 TCGA-FX-A3NJ-01 2 70505500 70505500 G C PCYOX1 3'UTR 0.47 TCGA-FX-A3NJ-01 3 185348390 185348390 A C SENP2 3'UTR 0.41 TCGA-FX-A3NJ-01 3 195516546 195516546 G A MUC4 Silent p.S635S 0.52 TCGA-FX-A3NJ-01 4 72620173 72620173 A C GC Missense_Mutation p.L425R 0.42 deleterious(0) probably_damaging(0.998) TCGA-FX-A3NJ-01 6 136599100 136599100 G A BCLAF1 Missense_Mutation p.P307S 0.17 tolerated_low_confidence(0.82) possibly_damaging(0.803) TCGA-FX-A3NJ-01 6 3263936 3263936 A G PSMG4 Missense_Mutation p.T65A 0.41 tolerated(0.07) probably_damaging(0.919) TCGA-FX-A3NJ-01 7 100854936 100854936 G - PLOD3 Frame_Shift_Del p.L432* 0.33 TCGA-FX-A3NJ-01 7 48559759 48559759 C T ABCA13 Silent p.F4640F 0.39 TCGA-FX-A3NJ-01 9 40771975 40771975 T C ZNF658 3'UTR 0.45 TCGA-FX-A3NJ-01 9 69113643 69113643 C T RP11-87H9.3 5'Flank 0.50 TCGA-FX-A3NJ-01 9 84530473 84530473 T A SPATA31D5P RNA 0.05 TCGA-FX-A3NK-01 10 124591688 124591688 T C CUZD1 3'UTR 0.18 TCGA-FX-A3NK-01 11 102195341 102195341 C G BIRC3 Missense_Mutation p.S34C 0.04 deleterious(0) probably_damaging(0.992) TCGA-FX-A3NK-01 11 17554814 17554814 C T USH1C Missense_Mutation p.R31Q 0.33 deleterious(0) probably_damaging(0.992) TCGA-FX-A3NK-01 11 55322430 55322430 T C OR4C15 Silent p.T216T 0.15 TCGA-FX-A3NK-01 11 65111502 65111502 C G DPF2 Missense_Mutation p.S200C 0.35 deleterious(0.01) benign(0.405) TCGA-FX-A3NK-01 11 65272668 65272668 C T MALAT1 RNA 0.29 TCGA-FX-A3NK-01 11 83169194 83169194 G A DLG2 3'UTR 0.32 TCGA-FX-A3NK-01 11 83169249 83169249 G T DLG2 3'UTR 0.23 TCGA-FX-A3NK-01 12 122340949 122340949 C T PSMD9 Missense_Mutation p.S164F 0.22 deleterious(0) probably_damaging(0.998) TCGA-FX-A3NK-01 12 2614008 2614008 G C CACNA1C Missense_Mutation p.V372L 0.17 deleterious(0.01) benign(0.063) TCGA-FX-A3NK-01 12 72366362 72366362 C T TPH2 Silent p.F224F 0.02 TCGA-FX-A3NK-01 12 72863625 72863625 C A TRHDE Missense_Mutation p.P423H 0.45 deleterious(0) probably_damaging(0.961) TCGA-FX-A3NK-01 12 75434318 75434318 T A KCNC2 3'UTR 0.33 TCGA-FX-A3NK-01 12 78444914 78444914 G A NAV3 Missense_Mutation p.D835N 0.03 deleterious(0.01) benign(0.039) TCGA-FX-A3NK-01 12 80888750 80888750 G A PTPRQ Missense_Mutation p.E523K 0.03 deleterious(0.03) possibly_damaging(0.831) TCGA-FX-A3NK-01 15 62234169 62234169 T C VPS13C Missense_Mutation p.Q1749R 0.68 tolerated(0.07) benign(0.24) TCGA-FX-A3NK-01 18 32833487 32833487 C G ZSCAN30 Missense_Mutation p.C471S 0.30 deleterious(0) probably_damaging(0.995) TCGA-FX-A3NK-01 18 6311562 6311562 G A L3MBTL4 Silent p.D21D 0.32 TCGA-FX-A3NK-01 19 10979988 10979988 C G C19orf38 Missense_Mutation p.S213C 0.07 deleterious(0) probably_damaging(0.938) TCGA-FX-A3NK-01 19 10980028 10980028 C G C19orf38 Missense_Mutation p.F226L 0.06 deleterious(0) possibly_damaging(0.682) TCGA-FX-A3NK-01 19 10980136 10980136 C T C19orf38 3'UTR 0.06 TCGA-FX-A3NK-01 19 13616929 13616929 C T CACNA1A Missense_Mutation p.R37Q 0.24 benign(0.417) TCGA-FX-A3NK-01 19 22847104 22847104 C - ZNF492 Frame_Shift_Del p.T213Lfs*5 0.09 TCGA-FX-A3NK-01 19 41063133 41063133 G A SPTBN4 Missense_Mutation p.A1832T 0.32 tolerated(0.08) probably_damaging(0.99) TCGA-FX-A3NK-01 19 50321597 50321597 G T MED25 5'UTR 0.54 TCGA-FX-A3NK-01 1 145076025 145076025 T A PDE4DIP 5'UTR 0.13 TCGA-FX-A3NK-01 1 201786318 201786318 C T NAV1 Missense_Mutation p.P1815S 0.50 tolerated(0.17) probably_damaging(0.999) TCGA-FX-A3NK-01 22 20342388 20342388 G A XXbac-B33L19.6 5'Flank 0.21 TCGA-FX-A3NK-01 2 122287836 122287836 C T CLASP1 Silent p.A87A 0.38 TCGA-FX-A3NK-01 2 50779907 50779907 T G NRXN1 Missense_Mutation p.H566P 0.24 tolerated(0.26) benign(0.003) TCGA-FX-A3NK-01 2 71043182 71043182 C T CLEC4F Missense_Mutation p.R444H 0.09 tolerated(0.19) benign(0.004) TCGA-FX-A3NK-01 3 109046709 109046709 C G DPPA4 3'UTR 0.17 TCGA-FX-A3NK-01 4 187524885 187524885 G C FAT1 Missense_Mutation p.L3599V 0.10 benign(0.02) TCGA-FX-A3NK-01 4 187630453 187630453 C T FAT1 Missense_Mutation p.D177N 0.25 probably_damaging(1) TCGA-FX-A3NK-01 4 2930211 2930211 G A ADD1 Silent p.P756P 0.47 TCGA-FX-A3NK-01 4 47625659 47625659 G A CORIN Silent p.P823P 0.23 TCGA-FX-A3NK-01 5 140248920 140248920 A G PCDHA11 Missense_Mutation p.N78D 0.06 deleterious_low_confidence(0.03) benign(0.142) TCGA-FX-A3NK-01 6 116861573 116861573 C T TRAPPC3L Missense_Mutation p.V65M 0.19 tolerated(0.25) benign(0.142) TCGA-FX-A3NK-01 6 142767252 142767252 G A GPR126 3'UTR 0.19 TCGA-FX-A3NK-01 6 142767285 142767285 G T GPR126 3'UTR 0.20 TCGA-FX-A3NK-01 6 142767302 142767302 G C GPR126 3'UTR 0.20 TCGA-FX-A3NK-01 6 25701446 25701446 C T SCGN Silent p.S238S 0.32 TCGA-FX-A3NK-01 6 29430039 29430039 C G OR2H1 Missense_Mutation p.P165A 0.29 deleterious(0.01) possibly_damaging(0.859) TCGA-FX-A3NK-01 8 39871215 39871215 G C IDO2 Missense_Mutation p.R297P 0.05 tolerated(0.09) possibly_damaging(0.754) TCGA-FX-A3NK-01 9 110087231 110087231 T G RAD23B Missense_Mutation p.S354R 0.25 tolerated(0.39) benign(0.052) TCGA-FX-A3NK-01 9 115923945 115923945 C G SLC31A2 Nonsense_Mutation p.S77* 0.18 TCGA-FX-A3NK-01 9 116176117 116176117 C T C9orf43 Missense_Mutation p.T77I 0.32 deleterious(0.01) possibly_damaging(0.801) TCGA-FX-A3RE-01 10 48416702 48416702 C A GDF2 5'UTR 0.30 TCGA-FX-A3RE-01 10 61932115 61932115 G A ANK3 Missense_Mutation p.S810L 0.65 probably_damaging(0.997) TCGA-FX-A3RE-01 11 128330238 128330238 C T ETS1 3'UTR 0.14 TCGA-FX-A3RE-01 11 51412386 51412386 T A OR4A5 Missense_Mutation p.N4Y 0.28 deleterious_low_confidence(0) benign(0.142) TCGA-FX-A3RE-01 11 57135558 57135558 C T P2RX3 Silent p.D306D 0.44 TCGA-FX-A3RE-01 11 65273644 65273648 CTTTG - MALAT1 RNA 0.49 TCGA-FX-A3RE-01 11 65633285 65633285 C T MUS81 Silent p.L503L 0.13 TCGA-FX-A3RE-01 11 8665970 8665970 T C TRIM66 Intron 0.29 TCGA-FX-A3RE-01 12 10853862 10853862 G C YBX3 3'UTR 0.06 TCGA-FX-A3RE-01 12 123351947 123351947 G C VPS37B Missense_Mutation p.P192A 0.37 tolerated(0.16) benign(0.036) TCGA-FX-A3RE-01 12 129190514 129190514 G A TMEM132C Missense_Mutation p.G1001R 0.32 tolerated(0.08) benign(0.099) TCGA-FX-A3RE-01 12 133197082 133197082 C G P2RX2 Missense_Mutation p.H229Q 0.17 deleterious(0.02) benign(0.168) TCGA-FX-A3RE-01 12 49745369 49745369 C T DNAJC22 3'UTR 0.31 TCGA-FX-A3RE-01 12 5021875 5021875 G A KCNA1 Missense_Mutation p.R444H 0.64 tolerated_low_confidence(0.08) benign(0.009) TCGA-FX-A3RE-01 12 53164948 53164948 A T KRT76 Missense_Mutation p.L440H 0.23 deleterious(0) probably_damaging(0.996) TCGA-FX-A3RE-01 12 6857646 6857646 A G MLF2 3'UTR 0.10 TCGA-FX-A3RE-01 12 8211888 8211888 A G C3AR1 Silent p.P298P 0.23 TCGA-FX-A3RE-01 12 8352361 8352361 C T FAM66C RNA 0.04 TCGA-FX-A3RE-01 13 113213664 113213664 C T TUBGCP3 Missense_Mutation p.S101N 0.45 deleterious(0) possibly_damaging(0.52) TCGA-FX-A3RE-01 13 22178083 22178083 C T MICU2 Missense_Mutation p.A69T 0.14 deleterious(0.04) benign(0.004) TCGA-FX-A3RE-01 13 52277758 52277758 C T WDFY2 Silent p.N102N 0.50 TCGA-FX-A3RE-01 14 105055650 105055650 C T C14orf180 3'UTR 0.21 TCGA-FX-A3RE-01 14 105178793 105178793 C G INF2 Nonsense_Mutation p.S838* 0.45 TCGA-FX-A3RE-01 14 34243561 34243561 C T NPAS3 Missense_Mutation p.R291W 0.21 deleterious(0) probably_damaging(0.973) TCGA-FX-A3RE-01 14 80328847 80328847 C G NRXN3 3'Flank 0.30 TCGA-FX-A3RE-01 14 89202895 89202895 T A EML5 Missense_Mutation p.S288C 0.20 deleterious(0) probably_damaging(0.986) TCGA-FX-A3RE-01 14 92278695 92278695 T C TC2N Missense_Mutation p.R88G 0.19 deleterious(0.01) benign(0.097) TCGA-FX-A3RE-01 15 102291831 102291831 C A DNM1P47 RNA 0.12 TCGA-FX-A3RE-01 15 28380807 28380807 C T HERC2 Missense_Mutation p.R4016K 0.15 probably_damaging(0.999) TCGA-FX-A3RE-01 15 44088358 44088358 A T SERINC4 Missense_Mutation p.F379I 0.29 tolerated(0.1) possibly_damaging(0.467) TCGA-FX-A3RE-01 15 54590064 54590064 G A UNC13C Silent p.V1348V 0.39 TCGA-FX-A3RE-01 15 54590065 54590065 G T UNC13C Nonsense_Mutation p.E1349* 0.41 TCGA-FX-A3RE-01 15 57816781 57816781 G A CGNL1 Missense_Mutation p.M957I 0.13 deleterious(0.02) benign(0.411) TCGA-FX-A3RE-01 15 76192975 76192975 A C UBE2Q2 3'UTR 0.19 TCGA-FX-A3RE-01 15 89402172 89402172 C T ACAN Missense_Mutation p.A2119V 0.50 tolerated(0.31) possibly_damaging(0.561) TCGA-FX-A3RE-01 16 15127202 15127202 T C PDXDC1 Silent p.A586A 0.10 TCGA-FX-A3RE-01 16 67291010 67291010 C T SLC9A5 Silent p.I443I 0.38 TCGA-FX-A3RE-01 17 10404994 10404994 A T MYH1 Missense_Mutation p.F1089I 0.17 deleterious(0.02) possibly_damaging(0.827) TCGA-FX-A3RE-01 17 15134197 15134197 T C PMP22 3'UTR 0.15 TCGA-FX-A3RE-01 17 16725652 16725652 A T AC022596.6 RNA 0.10 TCGA-FX-A3RE-01 17 1686394 1686394 G C SMYD4 Silent p.R732R 0.17 TCGA-FX-A3RE-01 17 31263374 31263374 C A TMEM98 Missense_Mutation p.L108I 0.17 tolerated(0.08) possibly_damaging(0.694) TCGA-FX-A3RE-01 17 38991131 38991131 T C TMEM99 Silent p.H121H 0.21 TCGA-FX-A3RE-01 17 40962300 40962300 G A BECN1 3'UTR 0.20 TCGA-FX-A3RE-01 17 41332827 41332827 C T NBR1 Missense_Mutation p.A67V 0.19 deleterious(0) possibly_damaging(0.852) TCGA-FX-A3RE-01 17 42461715 42461715 G A ITGA2B Silent p.V285V 0.37 TCGA-FX-A3RE-01 17 4448396 4448396 C G MYBBP1A Missense_Mutation p.E745D 0.13 tolerated(0.22) benign(0.233) TCGA-FX-A3RE-01 17 48703577 48703577 C A CACNA1G Missense_Mutation p.P2200Q 0.18 tolerated_low_confidence(0.23) benign(0.001) TCGA-FX-A3RE-01 17 4884615 4884615 T C CAMTA2 Missense_Mutation p.E225G 0.11 tolerated(0.27) benign(0.001) TCGA-FX-A3RE-01 17 5041559 5041559 C T USP6 Missense_Mutation p.P357S 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.641) TCGA-FX-A3RE-01 17 6367059 6367059 C A PITPNM3 Missense_Mutation p.V767F 0.29 deleterious(0) probably_damaging(1) TCGA-FX-A3RE-01 17 74393952 74393952 C T UBE2O Silent p.V681V 0.08 TCGA-FX-A3RE-01 18 29709604 29709604 T C RNF138 3'UTR 0.38 TCGA-FX-A3RE-01 18 43846784 43846784 G A C18orf25 3'UTR 0.18 TCGA-FX-A3RE-01 18 44549187 44549187 G A TCEB3CL Missense_Mutation p.T371M 0.09 deleterious(0) possibly_damaging(0.603) TCGA-FX-A3RE-01 18 61328304 61328304 A C SERPINB3 Silent p.T49T 0.36 TCGA-FX-A3RE-01 19 11354335 11354335 G A DOCK6 Missense_Mutation p.R386C 0.17 deleterious(0) probably_damaging(0.993) TCGA-FX-A3RE-01 19 43708243 43708243 G C PSG4 Silent p.L75L 0.39 TCGA-FX-A3RE-01 19 46351034 46351034 G A SYMPK Missense_Mutation p.R218C 0.25 tolerated(0.05) benign(0.358) TCGA-FX-A3RE-01 19 49558642 49558642 G A CGB7 5'UTR 0.20 TCGA-FX-A3RE-01 19 51361546 51361546 C A KLK3 Silent p.G156G 0.35 TCGA-FX-A3RE-01 19 51649285 51649285 C T SIGLEC7 Silent p.L312L 0.23 TCGA-FX-A3RE-01 19 51981777 51981777 C T CEACAM18 Silent p.L22L 0.20 TCGA-FX-A3RE-01 19 55711640 55711640 C A PTPRH Missense_Mutation p.A462S 0.17 benign(0.348) TCGA-FX-A3RE-01 19 57333112 57333112 C T PEG3 Silent p.P192P 0.21 TCGA-FX-A3RE-01 19 58084054 58084054 T C ZNF416 Silent p.T406T 0.12 TCGA-FX-A3RE-01 19 58101723 58101723 C G ZIK1 Missense_Mutation p.L182V 0.17 tolerated(0.06) benign(0.088) TCGA-FX-A3RE-01 19 9067878 9067878 G T MUC16 Missense_Mutation p.P6523Q 0.17 unknown(0) TCGA-FX-A3RE-01 1 149288165 149288165 C A RP11-403I13.8 RNA 0.16 TCGA-FX-A3RE-01 1 152080272 152080272 C A TCHH Missense_Mutation p.R1807S 0.19 benign(0.227) TCGA-FX-A3RE-01 1 155899504 155899504 T A KIAA0907 Missense_Mutation p.E128V 0.08 deleterious(0) probably_damaging(0.997) TCGA-FX-A3RE-01 1 169390604 169390604 T C CCDC181 Silent p.R355R 0.19 TCGA-FX-A3RE-01 1 190067918 190067918 G T BRINP3 Missense_Mutation p.H511N 0.15 deleterious(0) probably_damaging(0.98) TCGA-FX-A3RE-01 1 190067919 190067919 G T BRINP3 Silent p.V510V 0.17 TCGA-FX-A3RE-01 1 197398674 197398674 G A CRB1 Silent p.E924E 0.17 TCGA-FX-A3RE-01 1 205814604 205814604 G A PM20D1 Missense_Mutation p.S113L 0.26 deleterious(0.05) benign(0.07) TCGA-FX-A3RE-01 1 206327499 206327499 G A CTSE Missense_Mutation p.E230K 0.29 deleterious(0) probably_damaging(1) TCGA-FX-A3RE-01 1 223568250 223568250 C T C1orf65 Missense_Mutation p.A478V 0.46 tolerated(0.27) benign(0.168) TCGA-FX-A3RE-01 1 32256805 32256805 T A SPOCD1 Missense_Mutation p.K1017M 0.70 deleterious(0) probably_damaging(0.987) TCGA-FX-A3RE-01 1 62626690 62626690 C A INADL 3'UTR 0.25 TCGA-FX-A3RE-01 20 10619482 10619482 G C JAG1 3'UTR 0.22 TCGA-FX-A3RE-01 20 25457263 25457263 C T NINL Silent p.T888T 0.41 TCGA-FX-A3RE-01 20 62737859 62737859 T G NPBWR2 Missense_Mutation p.Y109S 0.44 tolerated(0.29) benign(0) TCGA-FX-A3RE-01 21 45178287 45178294 TGCCTTTG CACCT PDXK 3'UTR 0.23 TCGA-FX-A3RE-01 22 30387566 30387566 A T MTMR3 Nonsense_Mutation p.K123* 0.14 TCGA-FX-A3RE-01 22 39777838 39777838 C A SYNGR1 Silent p.P207P 0.11 TCGA-FX-A3RE-01 2 167159809 167159809 A G SCN9A Missense_Mutation p.L231P 0.32 deleterious(0) probably_damaging(0.997) TCGA-FX-A3RE-01 2 168099842 168099842 C T XIRP2 Missense_Mutation p.A647V 0.14 probably_damaging(0.994) TCGA-FX-A3RE-01 2 168099850 168099850 G T XIRP2 Missense_Mutation p.D650Y 0.16 probably_damaging(1) TCGA-FX-A3RE-01 2 170089920 170089920 C A LRP2 Splice_Site p.X1700_splice 0.11 TCGA-FX-A3RE-01 2 175436734 175436734 G T WIPF1 Missense_Mutation p.P267T 0.19 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-FX-A3RE-01 2 201778025 201778025 G T ORC2 Missense_Mutation p.T547K 0.15 deleterious(0) probably_damaging(0.989) TCGA-FX-A3RE-01 2 207564924 207564924 C T DYTN Missense_Mutation p.G167E 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-FX-A3RE-01 2 21228405 21228405 A G APOB Missense_Mutation p.F3779L 0.50 probably_damaging(0.92) TCGA-FX-A3RE-01 2 220473312 220473312 C G STK11IP Silent p.L548L 0.14 TCGA-FX-A3RE-01 2 227660538 227660538 C G IRS1 Missense_Mutation p.A973P 0.15 tolerated(0.31) benign(0.002) TCGA-FX-A3RE-01 2 228884539 228884539 G T SPHKAP Missense_Mutation p.A344D 0.18 tolerated(0.35) benign(0.041) TCGA-FX-A3RE-01 2 231152614 231152614 G A SP140 Silent p.K551K 0.39 TCGA-FX-A3RE-01 2 26951390 26951390 G A KCNK3 Missense_Mutation p.S380N 0.28 deleterious_low_confidence(0.04) benign(0.003) TCGA-FX-A3RE-01 2 27535900 27535900 G A MPV17 Silent p.G49G 0.12 TCGA-FX-A3RE-01 2 32605333 32605333 C T BIRC6 Missense_Mutation p.T207I 0.14 probably_damaging(0.991) TCGA-FX-A3RE-01 2 47301512 47301512 C T TTC7A 3'UTR 0.30 TCGA-FX-A3RE-01 2 6112272 6112272 T A DKFZP761K2322 Silent p.S72S 0.20 TCGA-FX-A3RE-01 2 74726511 74726511 T A LBX2 Intron 0.06 TCGA-FX-A3RE-01 2 85043080 85043080 C T DNAH6 Silent p.P4082P 0.16 TCGA-FX-A3RE-01 2 96648006 96648006 G A ANKRD36C Silent p.G197G 0.08 TCGA-FX-A3RE-01 2 98319328 98319328 G C LINC01125 RNA 0.23 TCGA-FX-A3RE-01 2 99013672 99013672 G C CNGA3 Missense_Mutation p.G680A 0.29 tolerated(0.28) benign(0.002) TCGA-FX-A3RE-01 3 100356177 100356177 A G GPR128 Missense_Mutation p.Q210R 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-FX-A3RE-01 3 110912071 110912071 G C PVRL3 Missense_Mutation p.D437H 0.12 tolerated_low_confidence(0.25) possibly_damaging(0.533) TCGA-FX-A3RE-01 3 122628266 122628266 T A SEMA5B 3'Flank 0.24 TCGA-FX-A3RE-01 3 148460710 148460710 A G AGTR1 3'UTR 0.48 TCGA-FX-A3RE-01 3 156642310 156642310 A T LEKR1 3'UTR 0.33 TCGA-FX-A3RE-01 3 190027980 190027980 G T CLDN1 Missense_Mutation p.P151T 0.23 deleterious(0) possibly_damaging(0.88) TCGA-FX-A3RE-01 4 102791783 102791783 A T BANK1 Silent p.S295S 0.48 TCGA-FX-A3RE-01 4 115792054 115792054 A T NDST4 Nonsense_Mutation p.L530* 0.27 TCGA-FX-A3RE-01 4 13602177 13602177 T A BOD1L1 Missense_Mutation p.E2116V 0.36 probably_damaging(0.999) TCGA-FX-A3RE-01 4 159092251 159092251 G A FAM198B Missense_Mutation p.P93S 0.06 tolerated(0.07) possibly_damaging(0.803) TCGA-FX-A3RE-01 4 169227760 169227760 A G DDX60 Missense_Mutation p.C126R 0.09 deleterious(0) probably_damaging(0.992) TCGA-FX-A3RE-01 4 3237472 3237472 G C HTT Missense_Mutation p.A2918P 0.25 probably_damaging(0.999) TCGA-FX-A3RE-01 4 36166640 36166640 T C ARAP2 Missense_Mutation p.K690R 0.18 deleterious(0) benign(0.17) TCGA-FX-A3RE-01 4 6293088 6293088 G A WFS1 Missense_Mutation p.E209K 0.24 tolerated(0.76) benign(0.077) TCGA-FX-A3RE-01 4 71020041 71020041 T C C4orf40 5'UTR 0.09 TCGA-FX-A3RE-01 4 71346984 71346984 A T MUC7 Missense_Mutation p.T175S 0.21 tolerated(0.14) unknown(0) TCGA-FX-A3RE-01 4 76924750 76924750 C G CXCL9 3'UTR 0.28 TCGA-FX-A3RE-01 4 87736076 87736076 G A PTPN13 3'UTR 0.25 TCGA-FX-A3RE-01 5 102537902 102537902 A G PPIP5K2 3'UTR 0.24 TCGA-FX-A3RE-01 5 11236855 11236855 G A CTNND2 Missense_Mutation p.A570V 0.20 deleterious(0) probably_damaging(0.963) TCGA-FX-A3RE-01 5 137756482 137756482 C T KDM3B Missense_Mutation p.P1268L 0.11 deleterious(0.01) benign(0.099) TCGA-FX-A3RE-01 5 140502563 140502563 G T PCDHB4 Missense_Mutation p.G328V 0.28 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-FX-A3RE-01 5 149450109 149450109 G A CSF1R Missense_Mutation p.R370C 0.30 deleterious(0) probably_damaging(0.998) TCGA-FX-A3RE-01 5 150078185 150078185 G - RBM22 Frame_Shift_Del p.R50Gfs*28 0.14 TCGA-FX-A3RE-01 5 50125731 50125731 T A PARP8 Missense_Mutation p.H723Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-FX-A3RE-01 5 65475111 65475111 A C SREK1 3'UTR 0.33 TCGA-FX-A3RE-01 5 7820784 7820784 A C ADCY2 Silent p.G1035G 0.25 TCGA-FX-A3RE-01 5 89968475 89968475 A G GPR98 Missense_Mutation p.Y1622C 0.17 probably_damaging(0.996) TCGA-FX-A3RE-01 5 96512975 96512975 C T RIOK2 Missense_Mutation p.E115K 0.38 deleterious(0.04) benign(0.297) TCGA-FX-A3RE-01 6 10400725 10400725 A T TFAP2A Missense_Mutation p.D327E 0.17 tolerated(0.41) possibly_damaging(0.519) TCGA-FX-A3RE-01 6 110934142 110934142 A T CDK19 3'UTR 0.31 TCGA-FX-A3RE-01 6 119137161 119137161 C T MCM9 Missense_Mutation p.S753N 0.13 tolerated_low_confidence(0.11) benign(0.076) TCGA-FX-A3RE-01 6 119509588 119509588 C A MAN1A1 Missense_Mutation p.W567C 0.35 deleterious(0) probably_damaging(1) TCGA-FX-A3RE-01 6 144104390 144104390 G A PHACTR2 Missense_Mutation p.M560I 0.27 deleterious(0.02) probably_damaging(0.974) TCGA-FX-A3RE-01 6 148869496 148869496 G T SASH1 Silent p.V1182V 0.38 TCGA-FX-A3RE-01 6 152674772 152674772 C A SYNE1 Missense_Mutation p.Q3678H 0.06 possibly_damaging(0.885) TCGA-FX-A3RE-01 6 152674781 152674781 C A SYNE1 Missense_Mutation p.M3675I 0.06 benign(0.018) TCGA-FX-A3RE-01 6 38746237 38746237 A G DNAH8 Missense_Mutation p.Q462R 0.18 benign(0.326) TCGA-FX-A3RE-01 6 64422019 64422019 A G PHF3 Missense_Mutation p.N1512S 0.21 tolerated(0.73) benign(0.005) TCGA-FX-A3RE-01 6 89890035 89890035 C G GABRR1 Missense_Mutation p.R374S 0.21 tolerated(0.16) possibly_damaging(0.755) TCGA-FX-A3RE-01 7 102584860 102584860 T G LRRC17 Missense_Mutation p.C378G 0.45 deleterious(0.01) probably_damaging(0.98) TCGA-FX-A3RE-01 7 12271553 12271553 T C TMEM106B Silent p.Y259Y 0.37 TCGA-FX-A3RE-01 7 128356956 128356956 C A FAM71F1 Silent p.L113L 0.32 TCGA-FX-A3RE-01 7 2473042 2473042 C A CHST12 Silent p.R256R 0.32 TCGA-FX-A3RE-01 7 82545573 82545573 T A PCLO Missense_Mutation p.E3910V 0.38 unknown(0) TCGA-FX-A3RE-01 7 93605309 93605309 C T AC006378.2 Intron 0.36 TCGA-FX-A3RE-01 7 99746558 99746558 C G LAMTOR4 5'UTR 0.42 TCGA-FX-A3RE-01 8 10986581 10986581 G A AF131215.5 5'UTR 0.21 TCGA-FX-A3RE-01 8 131249182 131249182 T C ASAP1 Missense_Mutation p.Y82C 0.19 deleterious(0.02) possibly_damaging(0.536) TCGA-FX-A3RE-01 8 139164708 139164708 T A FAM135B Silent p.S670S 0.20 TCGA-FX-A3RE-01 8 145534895 145534895 T A HSF1 Missense_Mutation p.L175H 0.06 deleterious(0) probably_damaging(0.997) TCGA-FX-A3RE-01 8 145621845 145621845 G A CPSF1 Missense_Mutation p.R932C 0.74 deleterious(0) probably_damaging(0.985) TCGA-FX-A3RE-01 8 27630123 27630123 A G CCDC25 5'UTR 0.80 TCGA-FX-A3RE-01 8 68179642 68179642 T G ARFGEF1 Missense_Mutation p.E536D 0.52 tolerated(0.08) probably_damaging(0.981) TCGA-FX-A3RE-01 8 95774013 95774013 C T DPY19L4 Missense_Mutation p.A274V 0.17 deleterious(0.01) possibly_damaging(0.903) TCGA-FX-A3RE-01 9 123722535 123722535 T A C5 Missense_Mutation p.I1557F 0.27 deleterious(0) probably_damaging(0.962) TCGA-FX-A3RE-01 9 131296042 131296042 A G GLE1 Silent p.K486K 0.08 TCGA-FX-A3RE-01 9 131862186 131862186 C T CRAT Silent p.G348G 0.12 TCGA-FX-A3RE-01 9 14120501 14120501 G A NFIB Missense_Mutation p.P395S 0.42 tolerated(0.06) probably_damaging(0.996) TCGA-FX-A3RE-01 9 74319671 74319671 G A TMEM2 Nonsense_Mutation p.R1012* 0.18 TCGA-FX-A3RE-01 9 99521015 99521015 C A ZNF510 3'UTR 0.10 TCGA-FX-A3RE-01 X 101153192 101153192 C A ZMAT1 Missense_Mutation p.G77V 0.21 deleterious(0.05) possibly_damaging(0.511) TCGA-FX-A3RE-01 X 102754773 102754773 C A RAB40A 3'UTR 0.08 TCGA-FX-A3RE-01 X 115303840 115303840 T A AGTR2 Missense_Mutation p.Y103N 0.29 deleterious(0) probably_damaging(1) TCGA-FX-A3RE-01 X 115590657 115590657 A T SLC6A14 3'UTR 0.06 TCGA-FX-A3RE-01 X 119496003 119496003 G A ATP1B4 5'UTR 0.17 TCGA-FX-A3RE-01 X 123518624 123518624 A T TENM1 Missense_Mutation p.F2053I 0.17 deleterious(0.01) benign(0.336) TCGA-FX-A3RE-01 X 123780640 123780640 T A TENM1 Missense_Mutation p.T534S 0.38 tolerated(1) benign(0.008) TCGA-FX-A3RE-01 X 132458181 132458181 C A GPC4 Missense_Mutation p.V235F 0.17 deleterious(0) probably_damaging(0.995) TCGA-FX-A3RE-01 X 148075744 148075744 C T AFF2 3'UTR 0.22 TCGA-FX-A3RE-01 X 153668462 153668462 C G GDI1 Missense_Mutation p.A188G 0.20 deleterious(0.01) benign(0.302) TCGA-FX-A3RE-01 X 154113673 154113673 C A H2AFB1 3'UTR 0.13 TCGA-FX-A3RE-01 X 16875794 16875794 C G RBBP7 Missense_Mutation p.G218R 0.08 deleterious(0) probably_damaging(0.999) TCGA-FX-A3RE-01 X 35821443 35821443 G T MAGEB16 3'UTR 0.38 TCGA-FX-A3RE-01 X 48832524 48832524 C T GRIPAP1 Splice_Site p.X729_splice 0.15 TCGA-FX-A3RE-01 X 88009153 88009153 T C CPXCR1 Silent p.S246S 0.17 TCGA-FX-A3TO-01 10 105927451 105927451 C T WDR96 Silent p.A912A 0.20 TCGA-FX-A3TO-01 10 15719609 15719609 C A ITGA8 Missense_Mutation p.G220W 0.22 deleterious(0) probably_damaging(1) TCGA-FX-A3TO-01 10 69832684 69832684 T C HERC4 Missense_Mutation p.N61S 0.51 deleterious(0.04) possibly_damaging(0.764) TCGA-FX-A3TO-01 11 102647069 102647069 C A MMP10 Missense_Mutation p.A292S 0.15 tolerated(0.73) benign(0.015) TCGA-FX-A3TO-01 11 104761968 104761968 A G CASP12 Missense_Mutation p.I199T 0.14 deleterious(0.03) possibly_damaging(0.463) TCGA-FX-A3TO-01 11 113857756 113857756 G T HTR3A Missense_Mutation p.D414Y 0.47 deleterious(0) possibly_damaging(0.459) TCGA-FX-A3TO-01 11 18159469 18159469 C G MRGPRX3 Silent p.S240S 0.41 TCGA-FX-A3TO-01 11 57575922 57575922 C T CTNND1 Missense_Mutation p.L718F 0.18 deleterious(0) probably_damaging(0.968) TCGA-FX-A3TO-01 11 58980425 58980425 G T MPEG1 5'Flank 0.30 TCGA-FX-A3TO-01 11 59426412 59426412 G C PATL1 Missense_Mutation p.P118R 0.24 deleterious(0) possibly_damaging(0.629) TCGA-FX-A3TO-01 11 6652903 6652903 T C DCHS1 Missense_Mutation p.N1207D 0.70 tolerated(0.05) possibly_damaging(0.645) TCGA-FX-A3TO-01 12 54369776 54369776 C G HOXC11 3'UTR 0.13 TCGA-FX-A3TO-01 12 65456299 65456299 A G WIF1 Missense_Mutation p.I263T 0.40 tolerated(0.38) possibly_damaging(0.722) TCGA-FX-A3TO-01 12 7026257 7026257 G C ENO2 Missense_Mutation p.G99A 0.65 deleterious_low_confidence(0.01) benign(0.152) TCGA-FX-A3TO-01 13 20277300 20277300 G C PSPC1 3'UTR 0.81 TCGA-FX-A3TO-01 13 36241588 36241588 C T NBEA Missense_Mutation p.R2827C 0.62 deleterious(0) benign(0.051) TCGA-FX-A3TO-01 14 57938048 57938048 G C C14orf105 3'UTR 0.15 TCGA-FX-A3TO-01 15 59407044 59407044 T C CCNB2 Missense_Mutation p.M189T 0.18 deleterious(0.01) probably_damaging(0.987) TCGA-FX-A3TO-01 15 59931102 59931102 A C GTF2A2 3'UTR 0.14 TCGA-FX-A3TO-01 15 63419128 63419128 C T LACTB Silent p.I165I 0.11 TCGA-FX-A3TO-01 16 3119356 3119356 A G IL32 Nonstop_Mutation p.*189Wext*3 0.12 TCGA-FX-A3TO-01 16 48122490 48122490 C T ABCC12 Silent p.G1147G 0.28 TCGA-FX-A3TO-01 16 51175551 51175551 G A SALL1 Silent p.N194N 0.37 TCGA-FX-A3TO-01 16 58538164 58538164 G A NDRG4 Silent p.S130S 0.92 TCGA-FX-A3TO-01 16 72139995 72139995 C T DHX38 Missense_Mutation p.T860M 0.79 deleterious(0) probably_damaging(1) TCGA-FX-A3TO-01 16 89837022 89837022 C T FANCA Silent p.T724T 0.73 TCGA-FX-A3TO-01 17 20224677 20224677 G A AC004702.2 Intron 0.13 TCGA-FX-A3TO-01 17 20796708 20796708 G A CCDC144NL Missense_Mutation p.P138S 0.23 tolerated_low_confidence(0.06) possibly_damaging(0.611) TCGA-FX-A3TO-01 17 3839703 3839703 C T ATP2A3 Nonsense_Mutation p.W794* 0.13 TCGA-FX-A3TO-01 17 42978925 42978925 C T CCDC103 Missense_Mutation p.R61W 0.23 deleterious(0) possibly_damaging(0.891) TCGA-FX-A3TO-01 17 62290410 62290410 G C TEX2 Missense_Mutation p.L390V 0.13 tolerated(0.43) benign(0.02) TCGA-FX-A3TO-01 17 62788544 62788544 C T PLEKHM1P RNA 0.18 TCGA-FX-A3TO-01 17 67109805 67109805 T G ABCA6 Missense_Mutation p.Q619P 0.36 deleterious(0) probably_damaging(1) TCGA-FX-A3TO-01 17 7189830 7189830 C T SLC2A4 Missense_Mutation p.T471I 0.12 deleterious(0.01) probably_damaging(1) TCGA-FX-A3TO-01 17 7578208 7578208 T C TP53 Missense_Mutation p.H214R 0.83 deleterious(0.02) probably_damaging(0.922) TCGA-FX-A3TO-01 17 8172312 8172312 T G PFAS Missense_Mutation p.I1249M 0.12 tolerated(0.14) benign(0.027) TCGA-FX-A3TO-01 18 12254359 12254359 C T CIDEA 5'UTR 0.59 TCGA-FX-A3TO-01 18 580481 580481 C A CETN1 Missense_Mutation p.L25I 0.60 deleterious(0.04) benign(0.083) TCGA-FX-A3TO-01 19 34844118 34844118 C G KIAA0355 3'UTR 0.16 TCGA-FX-A3TO-01 19 3534432 3534432 A T FZR1 Missense_Mutation p.D454V 0.44 deleterious(0) probably_damaging(1) TCGA-FX-A3TO-01 19 49254184 49254184 C T FUT1 Missense_Mutation p.A119T 0.35 tolerated(1) benign(0.006) TCGA-FX-A3TO-01 19 50340224 50340224 C T MED25 3'UTR 0.29 TCGA-FX-A3TO-01 19 53793793 53793793 T G BIRC8 5'UTR 0.21 TCGA-FX-A3TO-01 19 53987064 53987073 AAAGGAGTCA CCT ZNF813 5'UTR 0.11 TCGA-FX-A3TO-01 19 57868276 57868276 A T ZNF304 Missense_Mutation p.S347C 0.43 deleterious(0.01) benign(0.426) TCGA-FX-A3TO-01 19 9491685 9491685 T A ZNF177 Silent p.P226P 0.42 TCGA-FX-A3TO-01 1 152760239 152760239 A T LCE1E 3'UTR 0.29 TCGA-FX-A3TO-01 1 204987181 204987181 G A NFASC 3'UTR 0.25 TCGA-FX-A3TO-01 1 207760910 207760910 C T CR1 Nonsense_Mutation p.R1904* 0.26 TCGA-FX-A3TO-01 1 74930492 74930492 C T FPGT-TNNI3K Intron 0.40 TCGA-FX-A3TO-01 20 30433004 30433004 G A FOXS1 Silent p.F114F 0.33 TCGA-FX-A3TO-01 20 44685180 44685180 C T SLC12A5 Silent p.I1052I 0.15 TCGA-FX-A3TO-01 20 44686906 44686906 C T SLC12A5 3'Flank 0.10 TCGA-FX-A3TO-01 20 49201049 49201050 - T PTPN1 3'UTR 0.20 TCGA-FX-A3TO-01 20 60898549 60898549 G T LAMA5 Silent p.G2009G 0.27 TCGA-FX-A3TO-01 20 60937454 60937454 A T LAMA5 Splice_Site p.X150_splice 0.30 TCGA-FX-A3TO-01 22 18273498 18273498 T C MICAL3 Nonstop_Mutation p.*2003Wext*27 0.14 TCGA-FX-A3TO-01 22 26707840 26707840 C T SEZ6L Silent p.P596P 0.24 TCGA-FX-A3TO-01 22 50870702 50870702 G C PPP6R2 Missense_Mutation p.Q449H 0.42 deleterious(0.03) benign(0.067) TCGA-FX-A3TO-01 2 131976101 131976101 C T POTEE Silent p.N42N 0.46 TCGA-FX-A3TO-01 2 132054421 132054421 G T CYP4F31P 3'Flank 0.21 TCGA-FX-A3TO-01 2 228110634 228110634 G A COL4A3 Intron 0.22 TCGA-FX-A3TO-01 2 228110799 228110799 G A COL4A3 Intron 0.20 TCGA-FX-A3TO-01 2 228163461 228163461 C T COL4A3 Missense_Mutation p.S1272F 0.12 unknown(0) TCGA-FX-A3TO-01 2 90199133 90199133 C T IGKV1D-12 Silent p.S98S 0.18 TCGA-FX-A3TO-01 3 10261427 10261427 G A IRAK2 Missense_Mutation p.V323I 0.10 tolerated(0.31) benign(0.131) TCGA-FX-A3TO-01 3 132186035 132186035 A G DNAJC13 Missense_Mutation p.K696E 0.17 tolerated(0.16) benign(0.097) TCGA-FX-A3TO-01 3 137991910 137991910 G T ARMC8 Silent p.V513V 0.30 TCGA-FX-A3TO-01 3 150347724 150347724 G A SELT 3'UTR 0.15 TCGA-FX-A3TO-01 3 47950560 47950560 T C MAP4 Intron 0.15 TCGA-FX-A3TO-01 3 51937043 51937043 C A IQCF1 Missense_Mutation p.E22D 0.09 tolerated_low_confidence(0.44) benign(0.169) TCGA-FX-A3TO-01 3 97198209 97198209 G A EPHA6 Splice_Site p.X692_splice 0.50 TCGA-FX-A3TO-01 3 9932296 9932296 C G JAGN1 5'UTR 0.15 TCGA-FX-A3TO-01 4 113332167 113332167 G A ALPK1 Intron 0.19 TCGA-FX-A3TO-01 4 76722251 76722251 T G USO1 Missense_Mutation p.I637M 0.29 deleterious(0) possibly_damaging(0.859) TCGA-FX-A3TO-01 4 78783955 78783955 A C MRPL1 5'UTR 0.48 TCGA-FX-A3TO-01 4 95508214 95508214 G A PDLIM5 Intron 0.53 TCGA-FX-A3TO-01 5 11236827 11236827 A G CTNND2 Silent p.F579F 0.27 TCGA-FX-A3TO-01 5 1225482 1225482 G A SLC6A18 5'UTR 0.08 TCGA-FX-A3TO-01 5 140180904 140180904 A T PCDHA3 Missense_Mutation p.H41L 0.34 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-FX-A3TO-01 5 140220906 140220906 C T PCDHA4 Intron 0.22 TCGA-FX-A3TO-01 5 53815413 53815413 G A SNX18 Nonsense_Mutation p.W544* 0.06 TCGA-FX-A3TO-01 5 57791261 57791261 A G GAPT 3'UTR 0.41 TCGA-FX-A3TO-01 6 112672046 112672046 T C RFPL4B 3'UTR 0.48 TCGA-FX-A3TO-01 6 122753232 122753232 C T HSF2 Missense_Mutation p.P493L 0.12 deleterious(0.02) benign(0.01) TCGA-FX-A3TO-01 6 20493495 20493495 G A E2F3 3'UTR 0.90 TCGA-FX-A3TO-01 6 32808751 32808751 C G PSMB8 Silent p.R272R 0.44 TCGA-FX-A3TO-01 6 76728525 76728525 G A IMPG1 Silent p.S239S 0.27 TCGA-FX-A3TO-01 7 119914707 119914707 G A KCND2 Silent p.A7A 0.08 TCGA-FX-A3TO-01 7 142643361 142643361 G A KEL Missense_Mutation p.T416M 0.24 deleterious(0.01) probably_damaging(0.953) TCGA-FX-A3TO-01 7 148113753 148113753 T C CNTNAP2 3'UTR 0.15 TCGA-FX-A3TO-01 7 43484715 43484715 C T HECW1 Silent p.G648G 0.30 TCGA-FX-A3TO-01 7 5336737 5336737 C A SLC29A4 Silent p.R264R 0.36 TCGA-FX-A3TO-01 7 77797353 77797353 C G MAGI2 Missense_Mutation p.V826L 0.30 tolerated(0.37) benign(0.007) TCGA-FX-A3TO-01 7 98256505 98256505 A G NPTX2 Missense_Mutation p.D306G 0.38 deleterious(0.05) probably_damaging(0.914) TCGA-FX-A3TO-01 8 17079177 17079177 T C ZDHHC2 3'UTR 0.53 TCGA-FX-A3TO-01 8 17401098 17401098 C G SLC7A2 Missense_Mutation p.L124V 0.08 deleterious(0) probably_damaging(0.994) TCGA-FX-A3TO-01 8 69058476 69058476 C T PREX2 Missense_Mutation p.R1374W 0.32 deleterious(0.02) possibly_damaging(0.791) TCGA-FX-A3TO-01 8 90796327 90796327 A C RIPK2 Missense_Mutation p.E330A 0.20 tolerated(0.23) benign(0.003) TCGA-FX-A3TO-01 9 101589137 101589137 G C GALNT12 Silent p.G215G 0.35 TCGA-FX-A3TO-01 9 125391322 125391322 C T OR1B1 Missense_Mutation p.V165I 0.12 tolerated(0.18) benign(0) TCGA-FX-A3TO-01 9 126777694 126777694 C T LHX2 Missense_Mutation p.A206V 0.32 tolerated(0.34) benign(0.036) TCGA-FX-A3TO-01 9 21455680 21455680 G C MIR31HG RNA 0.16 TCGA-FX-A3TO-01 9 39171379 39171379 C T CNTNAP3 Silent p.R440R 0.16 TCGA-FX-A3TO-01 X 106143861 106143861 G T RIPPLY1 3'UTR 0.89 TCGA-FX-A3TO-01 X 30269231 30269231 G A MAGEB1 Silent p.V207V 0.43 TCGA-FX-A3TO-01 X 48374461 48374461 G A PORCN Missense_Mutation p.R367H 0.82 deleterious(0.01) probably_damaging(0.982) TCGA-FX-A3TO-01 X 48624263 48624263 C A GLOD5 Silent p.T29T 0.11 TCGA-FX-A3TO-01 X 73524388 73524388 G C ZCCHC13 Missense_Mutation p.R96T 0.15 deleterious(0.01) possibly_damaging(0.881) TCGA-FX-A3TO-01 X 80064059 80064059 G C BRWD3 Missense_Mutation p.H53Q 0.14 deleterious(0) possibly_damaging(0.536) TCGA-FX-A48G-01 10 123353371 123353371 T C FGFR2 5'UTR 0.08 TCGA-FX-A48G-01 10 49951200 49951200 C T WDFY4 Missense_Mutation p.S689F 0.13 deleterious(0) possibly_damaging(0.775) TCGA-FX-A48G-01 10 49951225 49951225 C T WDFY4 Silent p.V697V 0.14 TCGA-FX-A48G-01 10 49951403 49951403 C T WDFY4 Missense_Mutation p.P757S 0.17 tolerated(0.2) possibly_damaging(0.893) TCGA-FX-A48G-01 10 49951426 49951426 C T WDFY4 Silent p.L764L 0.18 TCGA-FX-A48G-01 10 49951504 49951504 C T WDFY4 Silent p.T790T 0.23 TCGA-FX-A48G-01 10 90701022 90701026 TCTTC A ACTA2 Frame_Shift_Del p.M192Ifs*3 0.77 TCGA-FX-A48G-01 11 1098687 1098687 G A MUC2 Missense_Mutation p.D2353N 0.83 unknown(0) TCGA-FX-A48G-01 11 123847411 123847411 G T OR10S1 Missense_Mutation p.P330T 0.27 tolerated_low_confidence(0.09) benign(0.001) TCGA-FX-A48G-01 11 18159001 18159001 G A MRGPRX3 Silent p.P84P 0.66 TCGA-FX-A48G-01 11 43819959 43819959 C T HSD17B12 Missense_Mutation p.L125F 0.41 deleterious(0) probably_damaging(1) TCGA-FX-A48G-01 12 111065921 111065921 A G TCTN1 Intron 0.58 TCGA-FX-A48G-01 12 115108517 115108517 G A TBX3 3'UTR 0.53 TCGA-FX-A48G-01 12 120884319 120884331 CCCTCTGGGCGGG GCC GATC Frame_Shift_Del p.L14Afs*20 0.38 TCGA-FX-A48G-01 12 57864284 57864284 C A GLI1 Nonsense_Mutation p.Y587* 0.31 TCGA-FX-A48G-01 13 100038221 100038221 C G UBAC2 3'Flank 0.80 TCGA-FX-A48G-01 13 30077407 30077407 C T MTUS2 3'UTR 0.57 TCGA-FX-A48G-01 15 22851110 22851110 G A TUBGCP5 Splice_Site p.X457_splice 0.18 TCGA-FX-A48G-01 15 43044957 43044957 C T TTBK2 Silent p.Q829Q 0.54 TCGA-FX-A48G-01 15 43045133 43045133 C G TTBK2 Missense_Mutation p.E771Q 0.42 tolerated_low_confidence(0.07) benign(0.115) TCGA-FX-A48G-01 15 67484396 67484396 C A SMAD3 3'UTR 0.95 TCGA-FX-A48G-01 16 1785034 1785034 C T MAPK8IP3 Intron 0.38 TCGA-FX-A48G-01 16 27459684 27459684 G T IL21R Intron 0.62 TCGA-FX-A48G-01 16 77325184 77325184 C A ADAMTS18 Missense_Mutation p.W1127C 0.64 deleterious(0) probably_damaging(0.996) TCGA-FX-A48G-01 17 36091772 36091772 C G HNF1B Missense_Mutation p.G287R 0.58 deleterious(0) probably_damaging(0.998) TCGA-FX-A48G-01 17 62969525 62969525 C T AMZ2P1 RNA 0.10 TCGA-FX-A48G-01 17 66527766 66527766 T A PRKAR1A 3'UTR 0.10 TCGA-FX-A48G-01 17 76446859 76446859 G A DNAH17 Missense_Mutation p.R3588C 0.46 benign(0.416) TCGA-FX-A48G-01 1 156950243 156950243 C T ARHGEF11 Missense_Mutation p.D87N 0.10 deleterious(0.02) probably_damaging(1) TCGA-FX-A48G-01 1 177001821 177001821 G A ASTN1 Silent p.H212H 0.33 TCGA-FX-A48G-01 1 197123399 197123399 T G ZBTB41 3'UTR 0.44 TCGA-FX-A48G-01 1 207016026 207016026 G A IL19 3'UTR 0.12 TCGA-FX-A48G-01 1 44085085 44085085 G T PTPRF Silent p.V1591V 0.22 TCGA-FX-A48G-01 1 62190776 62190776 G A TM2D1 Missense_Mutation p.P68L 0.81 deleterious_low_confidence(0) benign(0.007) TCGA-FX-A48G-01 20 35075162 35075162 G A DLGAP4 Silent p.A490A 0.44 TCGA-FX-A48G-01 22 37770666 37770666 G A ELFN2 Silent p.H303H 0.76 TCGA-FX-A48G-01 22 38071639 38071639 G A LGALS1 5'UTR 0.68 TCGA-FX-A48G-01 2 136579728 136579728 G A LCT Intron 0.28 TCGA-FX-A48G-01 2 212243410 212243410 T - ERBB4 3'UTR 0.16 TCGA-FX-A48G-01 2 232651201 232651201 C T COPS7B 5'UTR 0.17 TCGA-FX-A48G-01 3 14187332 14187332 T C XPC 3'UTR 0.46 TCGA-FX-A48G-01 3 167508157 167508157 C T SERPINI1 Intron 0.39 TCGA-FX-A48G-01 4 90168982 90168982 G C GPRIN3 Missense_Mutation p.F760L 0.51 deleterious(0.04) benign(0.065) TCGA-FX-A48G-01 5 147806999 147806999 C G FBXO38 Missense_Mutation p.N714K 0.33 tolerated_low_confidence(0.32) benign(0.291) TCGA-FX-A48G-01 5 74323855 74323855 T G GCNT4 3'UTR 0.49 TCGA-FX-A48G-01 6 25771211 25771211 T A SLC17A4 Missense_Mutation p.I226K 0.89 deleterious(0.04) benign(0.026) TCGA-FX-A48G-01 6 43041689 43041689 G A KLC4 Missense_Mutation p.A617T 0.35 tolerated_low_confidence(0.56) benign(0) TCGA-FX-A48G-01 6 55406543 55406543 G C HMGCLL1 Missense_Mutation p.S124C 0.55 deleterious(0) probably_damaging(1) TCGA-FX-A48G-01 7 101801856 101801856 A T CUX1 Missense_Mutation p.M242L 0.48 tolerated(0.28) unknown(0) TCGA-FX-A48G-01 8 141297735 141297735 C T TRAPPC9 Silent p.P749P 0.38 TCGA-FX-A48G-01 8 24168921 24168921 C T ADAM28 Silent p.D118D 0.25 TCGA-FX-A48G-01 8 68188215 68188215 G A ARFGEF1 Missense_Mutation p.P445S 0.12 deleterious(0.03) benign(0.438) TCGA-FX-A48G-01 8 95547168 95547168 A T KIAA1429 Missense_Mutation p.V128E 0.30 tolerated(0.07) possibly_damaging(0.736) TCGA-FX-A48G-01 X 99890554 99890554 C A TSPAN6 Splice_Site p.X92_splice 0.14 TCGA-FX-A76Y-01 11 27679009 27679011 TGT - BDNF 3'UTR 0.14 TCGA-FX-A76Y-01 12 124298365 124298365 C A DNAH10 Missense_Mutation p.T1111K 0.24 possibly_damaging(0.564) TCGA-FX-A76Y-01 12 23998945 23998945 C A SOX5 Missense_Mutation p.M151I 0.19 deleterious(0.01) probably_damaging(0.943) TCGA-FX-A76Y-01 12 50367185 50367185 A G AQP6 Missense_Mutation p.S77G 0.19 deleterious(0) probably_damaging(0.999) TCGA-FX-A76Y-01 12 96897758 96897758 A C C12orf55 Missense_Mutation p.K173T 0.41 deleterious(0) probably_damaging(0.929) TCGA-FX-A76Y-01 13 23906926 23906926 G C SACS Missense_Mutation p.L3697V 0.24 probably_damaging(0.984) TCGA-FX-A76Y-01 13 25910286 25910286 A T NUPL1 Intron 0.20 TCGA-FX-A76Y-01 14 105268965 105268965 G C ZBTB42 3'UTR 0.14 TCGA-FX-A76Y-01 14 52156445 52156445 T G FRMD6 5'UTR 0.52 TCGA-FX-A76Y-01 17 67215820 67215820 C T ABCA10 Missense_Mutation p.M132I 0.24 tolerated(0.24) benign(0.001) TCGA-FX-A76Y-01 18 7050762 7050762 G T LAMA1 Silent p.T173T 0.41 TCGA-FX-A76Y-01 19 14202661 14202661 G T PRKACA 3'UTR 0.41 TCGA-FX-A76Y-01 19 14211650 14211650 A T PRKACA Missense_Mutation p.I136N 0.10 tolerated(0.49) benign(0.006) TCGA-FX-A76Y-01 19 54659044 54659044 C G CNOT3 Intron 0.70 TCGA-FX-A76Y-01 19 58904844 58904844 G A RPS5 Missense_Mutation p.R146H 0.13 deleterious(0.04) probably_damaging(0.997) TCGA-FX-A76Y-01 1 110883188 110883188 G C RBM15 Missense_Mutation p.E387D 0.34 tolerated(0.09) possibly_damaging(0.887) TCGA-FX-A76Y-01 1 143767744 143767744 G T PPIAL4G Missense_Mutation p.N35K 0.25 deleterious_low_confidence(0.02) possibly_damaging(0.465) TCGA-FX-A76Y-01 1 203311601 203311601 C T FMOD Missense_Mutation p.C334Y 0.50 deleterious(0) probably_damaging(1) TCGA-FX-A76Y-01 1 24080854 24080854 A G TCEB3 Silent p.S591S 0.34 TCGA-FX-A76Y-01 22 18904407 18904407 G A PRODH Missense_Mutation p.R508C 0.42 tolerated(0.11) benign(0.013) TCGA-FX-A76Y-01 2 131487402 131487402 C T GPR148 Silent p.C226C 0.11 TCGA-FX-A76Y-01 2 133542322 133542322 C A NCKAP5 Missense_Mutation p.V688F 0.50 deleterious(0.04) benign(0.014) TCGA-FX-A76Y-01 3 12881803 12881803 G A RPL32 Intron 0.26 TCGA-FX-A76Y-01 4 144107117 144107117 G C USP38 Missense_Mutation p.V172L 0.12 deleterious(0.01) possibly_damaging(0.881) TCGA-FX-A76Y-01 4 36069535 36069535 C A ARAP2 Missense_Mutation p.L1703F 0.57 deleterious_low_confidence(0.01) benign(0.33) TCGA-FX-A76Y-01 4 89338623 89338623 C T HERC6 Silent p.I535I 0.41 TCGA-FX-A76Y-01 5 71489794 71489794 C A MAP1B Missense_Mutation p.H204Q 0.40 unknown(0) TCGA-FX-A76Y-01 6 1314134 1314134 G A FOXQ1 Missense_Mutation p.E399K 0.10 deleterious_low_confidence(0) benign(0.157) TCGA-FX-A76Y-01 6 1314135 1314135 A C FOXQ1 Missense_Mutation p.E399A 0.10 deleterious_low_confidence(0) benign(0.287) TCGA-FX-A76Y-01 6 13182854 13182854 C - PHACTR1 Frame_Shift_Del p.P201Qfs*27 0.27 TCGA-FX-A76Y-01 7 154863029 154863029 C T HTR5A Silent p.Y140Y 0.63 TCGA-FX-A76Y-01 7 82583496 82583496 C A PCLO Missense_Mutation p.S2258I 0.50 unknown(0) TCGA-FX-A76Y-01 8 144658831 144658831 G T NAPRT1 Missense_Mutation p.T289N 0.39 deleterious(0) possibly_damaging(0.673) TCGA-FX-A76Y-01 8 145554668 145554668 T G SCRT1 3'UTR 0.24 TCGA-FX-A76Y-01 9 133967191 133967191 C T LAMC3 3'UTR 0.39 TCGA-FX-A76Y-01 X 114426788 114426788 C T RBMXL3 Silent p.R928R 0.37 TCGA-FX-A76Y-01 X 125299833 125299833 C T DCAF12L2 Silent p.S25S 0.20 TCGA-FX-A8OO-01 11 103056979 103056979 T A DYNC2H1 Missense_Mutation p.H2214Q 0.06 benign(0) TCGA-FX-A8OO-01 11 55798441 55798441 C A OR5AS1 Missense_Mutation p.P183T 0.47 deleterious(0.02) probably_damaging(0.957) TCGA-FX-A8OO-01 11 64544038 64544038 G A SF1 Missense_Mutation p.T156I 0.48 tolerated(0.1) benign(0.188) TCGA-FX-A8OO-01 12 104743405 104743405 G T TXNRD1 3'UTR 0.15 TCGA-FX-A8OO-01 12 108004005 108004005 C T BTBD11 Missense_Mutation p.A561V 0.54 deleterious(0.01) probably_damaging(0.999) TCGA-FX-A8OO-01 15 73044457 73044457 T A ADPGK 3'UTR 0.40 TCGA-FX-A8OO-01 16 90032830 90032830 A G DEF8 3'UTR 0.30 TCGA-FX-A8OO-01 17 33806526 33806526 G A SLFN12L Nonsense_Mutation p.R235* 0.47 TCGA-FX-A8OO-01 17 48827881 48827881 T G LUC7L3 Missense_Mutation p.D386E 0.36 tolerated_low_confidence(0.19) possibly_damaging(0.739) TCGA-FX-A8OO-01 17 55028339 55028339 T C COIL Silent p.R88R 0.52 TCGA-FX-A8OO-01 17 68172115 68172115 G A KCNJ2 Missense_Mutation p.R312H 0.42 deleterious(0) probably_damaging(0.999) TCGA-FX-A8OO-01 17 73841963 73841963 C A WBP2 3'UTR 0.42 TCGA-FX-A8OO-01 19 39195638 39195638 C T ACTN4 Silent p.A154A 0.49 TCGA-FX-A8OO-01 19 48789076 48789076 A T ZNF114 Missense_Mutation p.K65N 0.51 deleterious(0.03) benign(0.013) TCGA-FX-A8OO-01 1 197071130 197071130 C A ASPM Missense_Mutation p.R2417S 0.67 tolerated(0.52) benign(0.314) TCGA-FX-A8OO-01 1 28858479 28858479 G T RCC1 Missense_Mutation p.V111L 0.39 tolerated(0.2) benign(0.011) TCGA-FX-A8OO-01 1 38483231 38483231 T C UTP11L Intron 0.07 TCGA-FX-A8OO-01 22 28144310 28144310 C G MN1 3'UTR 0.52 TCGA-FX-A8OO-01 22 31328907 31328907 C T MORC2 Missense_Mutation p.V769M 0.38 deleterious_low_confidence(0.02) benign(0.221) TCGA-FX-A8OO-01 22 50518372 50518372 A G MLC1 Missense_Mutation p.L133P 0.42 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-FX-A8OO-01 2 179416435 179416435 G C TTN Missense_Mutation p.R30398G 0.48 TCGA-FX-A8OO-01 2 50148734 50148734 G T NRXN1 3'UTR 0.42 TCGA-FX-A8OO-01 2 73455974 73455974 C G PRADC1 Missense_Mutation p.S132T 0.44 tolerated(0.31) benign(0.182) TCGA-FX-A8OO-01 3 120941941 120941941 G T STXBP5L Missense_Mutation p.V350L 0.45 deleterious(0.01) possibly_damaging(0.718) TCGA-FX-A8OO-01 3 126382250 126382250 C T NUP210P1 RNA 0.58 TCGA-FX-A8OO-01 3 183495458 183495458 C G YEATS2 Missense_Mutation p.I902M 0.46 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-FX-A8OO-01 3 37096646 37096646 A G LRRFIP2 Silent p.N627N 0.42 TCGA-FX-A8OO-01 4 149000719 149000719 T C NR3C2 3'UTR 0.40 TCGA-FX-A8OO-01 5 127713448 127713448 C T FBN2 Missense_Mutation p.V616I 0.38 tolerated(0.25) benign(0.081) TCGA-FX-A8OO-01 5 145719326 145719326 C T POU4F3 Silent p.H112H 0.54 TCGA-FX-A8OO-01 6 21065347 21065347 A G CDKAL1 Missense_Mutation p.Q375R 0.04 tolerated(0.1) benign(0.405) TCGA-FX-A8OO-01 6 46991854 46991854 G A GPR110 Missense_Mutation p.T126M 0.42 tolerated(0.29) benign(0.022) TCGA-FX-A8OO-01 6 74537690 74537690 G T CD109 3'UTR 0.63 TCGA-FX-A8OO-01 8 143961100 143961100 G A CYP11B1 Missense_Mutation p.R44C 0.49 tolerated(0.37) benign(0) TCGA-FX-A8OO-01 8 23225664 23225664 G A LOXL2 Silent p.H67H 0.48 TCGA-FX-A8OO-01 9 14083372 14083372 C T NFIB 3'Flank 0.48 TCGA-FX-A8OO-01 9 16552635 16552635 T A BNC2 Missense_Mutation p.I188F 0.38 deleterious(0) probably_damaging(0.996) TCGA-FX-A8OO-01 9 70177160 70177160 G A FOXD4L5 Missense_Mutation p.A275V 0.16 deleterious(0) benign(0.111) TCGA-FX-A8OO-01 X 108904872 108904872 G A ACSL4 Missense_Mutation p.R570C 0.46 deleterious(0) probably_damaging(0.999) TCGA-FX-A8OO-01 X 47486725 47486725 C T CFP Missense_Mutation p.G194E 0.34 deleterious(0) probably_damaging(0.967) TCGA-FX-A8OO-01 X 53172575 53172575 C A LINC01155 RNA 0.06 TCGA-FX-A8OO-01 X 70587351 70587351 A T TAF1 Missense_Mutation p.E61D 0.28 tolerated(0.22) benign(0.034) TCGA-HB-A2OT-01 10 11373097 11373100 TACC - CELF2 3'UTR 0.36 TCGA-HB-A2OT-01 10 126490383 126490383 G C FAM175B 5'UTR 0.44 TCGA-HB-A2OT-01 10 17271377 17271377 T G VIM 5'UTR 0.55 TCGA-HB-A2OT-01 10 17875749 17875749 T C MRC1L1 Missense_Mutation p.L238S 0.21 probably_damaging(0.998) TCGA-HB-A2OT-01 10 52834636 52834636 C A PRKG1 Missense_Mutation p.L96M 0.29 tolerated(0.07) benign(0.273) TCGA-HB-A2OT-01 11 103191767 103191767 A T DYNC2H1 Missense_Mutation p.D3919V 0.15 benign(0.055) TCGA-HB-A2OT-01 11 10653562 10653562 A - MRVI1 Frame_Shift_Del p.S126Pfs*5 0.16 TCGA-HB-A2OT-01 11 113270544 113270544 A T ANKK1 Missense_Mutation p.N618I 0.25 deleterious(0.05) benign(0.093) TCGA-HB-A2OT-01 11 130103271 130103271 A G ZBTB44 3'UTR 0.13 TCGA-HB-A2OT-01 11 130275593 130275593 A G ADAMTS8 Missense_Mutation p.C844R 0.19 deleterious(0) probably_damaging(0.993) TCGA-HB-A2OT-01 11 2182195 2182195 G A INS-IGF2 Silent p.L3L 0.16 TCGA-HB-A2OT-01 11 218993 218993 G A SIRT3 Nonsense_Mutation p.R340* 0.17 TCGA-HB-A2OT-01 11 43581305 43581305 C T MIR670 3'Flank 0.19 TCGA-HB-A2OT-01 11 4869965 4869965 A G OR51S1 Silent p.F158F 0.18 TCGA-HB-A2OT-01 11 67764078 67764078 C T UNC93B1 Missense_Mutation p.A361T 0.31 tolerated(1) benign(0.012) TCGA-HB-A2OT-01 11 93456287 93456287 A G KIAA1731 Missense_Mutation p.I2010V 0.28 tolerated(1) benign(0.004) TCGA-HB-A2OT-01 11 94113303 94113303 T C GPR83 3'UTR 0.16 TCGA-HB-A2OT-01 12 124341717 124341717 C T DNAH10 Missense_Mutation p.R2067C 0.16 probably_damaging(0.998) TCGA-HB-A2OT-01 12 3121377 3121377 C T TEAD4 Silent p.R111R 0.29 TCGA-HB-A2OT-01 12 49445378 49445378 G A KMT2D Silent p.S696S 0.38 TCGA-HB-A2OT-01 12 75824639 75824639 C T GLIPR1L2 Missense_Mutation p.R245W 0.23 deleterious(0) probably_damaging(0.999) TCGA-HB-A2OT-01 12 93196420 93196420 T G EEA1 Missense_Mutation p.K810N 0.28 tolerated(0.36) benign(0) TCGA-HB-A2OT-01 12 97045392 97045392 G T C12orf55 Missense_Mutation p.W1633C 0.17 deleterious(0) probably_damaging(0.994) TCGA-HB-A2OT-01 13 28367891 28367891 A G GSX1 Missense_Mutation p.K201E 0.12 deleterious(0) probably_damaging(0.934) TCGA-HB-A2OT-01 13 39450410 39450410 C A FREM2 Missense_Mutation p.T2812N 0.15 tolerated(0.09) benign(0.004) TCGA-HB-A2OT-01 13 39587561 39587562 CA - PROSER1 Frame_Shift_Del p.E610Afs*47 0.17 TCGA-HB-A2OT-01 14 70795938 70795938 C T COX16 Missense_Mutation p.E53K 0.22 tolerated(0.18) probably_damaging(0.995) TCGA-HB-A2OT-01 14 93706930 93706930 T C BTBD7 3'UTR 0.16 TCGA-HB-A2OT-01 15 27188460 27188460 G A GABRA5 Missense_Mutation p.V326M 0.19 deleterious(0.03) probably_damaging(1) TCGA-HB-A2OT-01 15 33023802 33023802 C T GREM1 3'UTR 0.11 TCGA-HB-A2OT-01 15 77934287 77934287 G A RP11-307C19.3 RNA 0.15 TCGA-HB-A2OT-01 16 29906619 29906619 G A SEZ6L2 Missense_Mutation p.R272W 0.21 deleterious(0.01) probably_damaging(0.97) TCGA-HB-A2OT-01 16 86614032 86614032 C - FOXL1 3'UTR 0.16 TCGA-HB-A2OT-01 16 87678395 87678395 G A JPH3 Missense_Mutation p.R305H 0.23 deleterious(0) probably_damaging(0.999) TCGA-HB-A2OT-01 17 12666808 12666808 A T MYOCD Missense_Mutation p.E936D 0.14 tolerated(0.29) probably_damaging(0.997) TCGA-HB-A2OT-01 17 16725794 16725794 T A AC022596.6 RNA 0.06 TCGA-HB-A2OT-01 17 38551786 38551786 T A TOP2A Missense_Mutation p.E1242D 0.20 tolerated(0.12) benign(0.008) TCGA-HB-A2OT-01 17 48050587 48050587 C A DLX4 Missense_Mutation p.P145H 0.33 deleterious(0) probably_damaging(1) TCGA-HB-A2OT-01 18 7231229 7231229 C T LRRC30 Silent p.D31D 0.24 TCGA-HB-A2OT-01 19 16034891 16034891 T C CYP4F11 Missense_Mutation p.K217E 0.17 tolerated(0.14) benign(0.062) TCGA-HB-A2OT-01 19 17088328 17088328 A T CPAMD8 Silent p.A583A 0.21 TCGA-HB-A2OT-01 19 31767225 31767225 T C TSHZ3 3'UTR 0.23 TCGA-HB-A2OT-01 19 33490504 33490504 G A RHPN2 Missense_Mutation p.R405C 0.09 deleterious(0.01) possibly_damaging(0.466) TCGA-HB-A2OT-01 19 52034155 52034155 G C SIGLEC6 Missense_Mutation p.S162R 0.08 tolerated(1) benign(0.006) TCGA-HB-A2OT-01 19 55174398 55174398 C A LILRB4 5'UTR 0.15 TCGA-HB-A2OT-01 19 58004443 58004443 G T ZNF419 Missense_Mutation p.G174V 0.36 deleterious(0.04) benign(0.001) TCGA-HB-A2OT-01 1 156622537 156622537 C A BCAN Silent p.R599R 0.21 TCGA-HB-A2OT-01 1 17588628 17588628 G T PADI3 Missense_Mutation p.V92F 0.26 deleterious(0.01) benign(0.169) TCGA-HB-A2OT-01 1 247752530 247752530 C A OR2G2 Missense_Mutation p.P290H 0.28 deleterious(0) probably_damaging(1) TCGA-HB-A2OT-01 1 37270734 37270734 C T GRIK3 Missense_Mutation p.E807K 0.24 tolerated(0.32) benign(0.113) TCGA-HB-A2OT-01 1 39801098 39801098 A G MACF1 Intron 0.52 TCGA-HB-A2OT-01 1 89660991 89660991 C T GBP4 Missense_Mutation p.D118N 0.38 deleterious(0.04) benign(0.14) TCGA-HB-A2OT-01 20 40735528 40735528 G A PTPRT Silent p.A1096A 0.27 TCGA-HB-A2OT-01 20 6096550 6096550 C T FERMT1 Missense_Mutation p.R98H 0.21 deleterious(0.04) benign(0.334) TCGA-HB-A2OT-01 21 46330734 46330734 G T ITGB2 Intron 0.21 TCGA-HB-A2OT-01 22 18020346 18020346 C T CECR2 Missense_Mutation p.R560C 0.36 deleterious(0.02) benign(0.048) TCGA-HB-A2OT-01 22 26110395 26110395 A G ADRBK2 Silent p.E504E 0.43 TCGA-HB-A2OT-01 22 43831030 43831030 A C MPPED1 Silent p.R101R 0.61 TCGA-HB-A2OT-01 22 44342695 44342695 G T PNPLA3 3'UTR 0.49 TCGA-HB-A2OT-01 2 152521904 152521904 G A NEB Silent p.Y1727Y 0.31 TCGA-HB-A2OT-01 2 185802321 185802321 G T ZNF804A Missense_Mutation p.S733I 0.19 deleterious(0) possibly_damaging(0.502) TCGA-HB-A2OT-01 2 1947094 1947094 A T MYT1L Nonsense_Mutation p.C55* 0.36 TCGA-HB-A2OT-01 2 24262326 24262326 C G C2orf44 Silent p.L13L 0.28 TCGA-HB-A2OT-01 2 75115175 75115175 C G HK2 Missense_Mutation p.Q789E 0.27 tolerated(0.51) probably_damaging(0.993) TCGA-HB-A2OT-01 2 96781300 96781300 G T ADRA2B Missense_Mutation p.L197M 0.30 tolerated(0.17) benign(0.087) TCGA-HB-A2OT-01 3 125248377 125248377 A C OSBPL11 3'UTR 0.17 TCGA-HB-A2OT-01 3 178947220 178947220 A G PIK3CA Missense_Mutation p.K886E 0.15 tolerated(0.2) benign(0.403) TCGA-HB-A2OT-01 3 36779370 36779370 T C DCLK3 Missense_Mutation p.K261E 0.12 tolerated(0.18) benign(0.154) TCGA-HB-A2OT-01 3 39555017 39555017 G - MOBP 3'UTR 0.14 TCGA-HB-A2OT-01 4 123188042 123188042 T - KIAA1109 Frame_Shift_Del p.L2475Wfs*28 0.33 TCGA-HB-A2OT-01 4 155749492 155749492 C A RBM46 3'UTR 0.46 TCGA-HB-A2OT-01 5 112769636 112769636 C T TSSK1B Missense_Mutation p.E301K 0.17 tolerated_low_confidence(0.25) benign(0.003) TCGA-HB-A2OT-01 5 124079849 124079849 G A ZNF608 Silent p.N278N 0.13 TCGA-HB-A2OT-01 5 149216579 149216579 C G PPARGC1B Nonsense_Mutation p.S854* 0.25 TCGA-HB-A2OT-01 5 156390214 156390214 A T TIMD4 5'UTR 0.08 TCGA-HB-A2OT-01 5 158126125 158126126 AG - EBF1 Frame_Shift_Del p.P590Hfs*7 0.21 TCGA-HB-A2OT-01 5 74962644 74962644 T A ANKDD1B Missense_Mutation p.S407T 0.11 tolerated(0.41) benign(0.229) TCGA-HB-A2OT-01 6 107811811 107811811 A T SOBP 5'UTR 0.21 TCGA-HB-A2OT-01 6 136599231 136599231 T A BCLAF1 Missense_Mutation p.H263L 0.07 deleterious(0.02) benign(0.402) TCGA-HB-A2OT-01 6 27219026 27219026 A T PRSS16 Missense_Mutation p.I234F 0.13 deleterious(0.01) benign(0.285) TCGA-HB-A2OT-01 6 36652002 36652002 A C CDKN1A Missense_Mutation p.I42L 0.19 tolerated(1) benign(0.001) TCGA-HB-A2OT-01 6 54002429 54002429 T G MLIP Intron 0.17 TCGA-HB-A2OT-01 6 88120317 88120317 C G C6ORF165 Silent p.V41V 0.28 TCGA-HB-A2OT-01 7 142013342 142013342 T G TRBV4-1 Missense_Mutation p.F66C 0.07 deleterious(0) probably_damaging(0.994) TCGA-HB-A2OT-01 7 6621842 6621842 A G ZDHHC4 Silent p.V110V 0.32 TCGA-HB-A2OT-01 7 82579403 82579403 T G PCLO Missense_Mutation p.M3501L 0.25 unknown(0) TCGA-HB-A2OT-01 8 10387102 10387102 G A PRSS55 Silent p.P80P 0.38 TCGA-HB-A2OT-01 8 140631178 140631178 G C KCNK9 Missense_Mutation p.R150G 0.15 deleterious(0) benign(0.072) TCGA-HB-A2OT-01 8 19819651 19819651 G C LPL Missense_Mutation p.V450L 0.38 tolerated(0.62) benign(0.014) TCGA-HB-A2OT-01 8 26613976 26613976 G C ADRA1A Intron 0.19 TCGA-HB-A2OT-01 8 59060732 59060732 T G FAM110B 3'UTR 0.17 TCGA-HB-A2OT-01 9 101052567 101052567 T G GABBR2 3'UTR 0.28 TCGA-HB-A2OT-01 9 135961673 135961673 T C CELP RNA 0.17 TCGA-HB-A2OT-01 9 20789525 20789525 A C FOCAD Missense_Mutation p.H458P 0.28 deleterious(0.01) benign(0.11) TCGA-HB-A2OT-01 9 32418329 32418329 G A ACO1 Missense_Mutation p.G160S 0.18 tolerated(0.11) benign(0.121) TCGA-HB-A2OT-01 9 32419050 32419050 G A ACO1 Missense_Mutation p.E225K 0.25 deleterious(0) probably_damaging(1) TCGA-HB-A2OT-01 X 114143176 114143176 T A HTR2C 3'UTR 0.42 TCGA-HB-A2OT-01 X 14882869 14882869 G A FANCB Missense_Mutation p.S255F 0.16 deleterious(0) probably_damaging(0.931) TCGA-HB-A2OT-01 X 18189140 18189140 A T BEND2 Missense_Mutation p.N722K 0.18 deleterious(0) probably_damaging(1) TCGA-HB-A2OT-01 X 53573554 53573554 C A HUWE1 Splice_Site p.X3587_splice 0.13 TCGA-HB-A2OT-01 X 76939959 76939959 C T ATRX Nonsense_Mutation p.W263* 0.40 TCGA-HB-A3L4-01 10 126177109 126177109 G C LHPP Missense_Mutation p.E144D 0.51 tolerated(0.54) benign(0) TCGA-HB-A3L4-01 10 64927119 64927119 A C JMJD1C 3'UTR 0.59 TCGA-HB-A3L4-01 11 116691844 116691844 G A APOA4 Silent p.Y310Y 0.39 TCGA-HB-A3L4-01 11 58660193 58660193 G C GLYATL1P2 RNA 0.44 TCGA-HB-A3L4-01 11 60690262 60690262 A C TMEM109 3'UTR 0.43 TCGA-HB-A3L4-01 12 123253962 123253962 C G DENR 3'UTR 0.44 TCGA-HB-A3L4-01 12 12815224 12815224 T C GPR19 Silent p.Q53Q 0.93 TCGA-HB-A3L4-01 12 131498757 131498757 A G GPR133 Missense_Mutation p.M449V 0.27 tolerated(0.31) benign(0) TCGA-HB-A3L4-01 12 56498365 56498365 C G PA2G4 5'UTR 0.45 TCGA-HB-A3L4-01 13 103382411 103382411 A C CCDC168 Missense_Mutation p.L2250W 0.65 tolerated(0.14) unknown(0) TCGA-HB-A3L4-01 13 36246632 36246632 C T NBEA 3'UTR 0.88 TCGA-HB-A3L4-01 14 24707611 24707611 G A GMPR2 Missense_Mutation p.R304K 0.56 tolerated(0.06) possibly_damaging(0.796) TCGA-HB-A3L4-01 14 50585356 50585356 C T SOS2 Silent p.Q1235Q 0.40 TCGA-HB-A3L4-01 15 63029075 63029075 A - TLN2 Splice_Site p.X1120_splice 0.40 TCGA-HB-A3L4-01 16 24918471 24918471 G T SLC5A11 Nonsense_Mutation p.E414* 0.41 TCGA-HB-A3L4-01 17 12917814 12917814 C G ELAC2 Splice_Site p.X145_splice 0.33 TCGA-HB-A3L4-01 17 43227864 43227864 G T HEXIM1 3'UTR 0.32 TCGA-HB-A3L4-01 17 43530773 43530773 C T PLEKHM1 Silent p.L815L 0.49 TCGA-HB-A3L4-01 18 3879965 3879965 C A DLGAP1 Missense_Mutation p.S35I 0.43 deleterious(0) possibly_damaging(0.534) TCGA-HB-A3L4-01 18 77895236 77895236 G A ADNP2 Missense_Mutation p.G647D 0.45 tolerated(0.13) benign(0.059) TCGA-HB-A3L4-01 19 30019367 30019367 A T VSTM2B Missense_Mutation p.S99C 0.44 deleterious(0) probably_damaging(0.995) TCGA-HB-A3L4-01 19 39760617 39760617 C A IFNL2 Missense_Mutation p.D189E 0.33 deleterious(0) probably_damaging(0.989) TCGA-HB-A3L4-01 1 113616182 113616182 C T LRIG2 Missense_Mutation p.P52S 0.46 tolerated(0.63) benign(0.001) TCGA-HB-A3L4-01 1 117509804 117509804 G A PTGFRN Silent p.E637E 0.58 TCGA-HB-A3L4-01 1 17567209 17567209 T A PADI1 Missense_Mutation p.L571H 0.30 deleterious(0) probably_damaging(1) TCGA-HB-A3L4-01 1 198711363 198711363 C T PTPRC Missense_Mutation p.A855V 0.24 deleterious(0) probably_damaging(1) TCGA-HB-A3L4-01 1 208390466 208390466 T A PLXNA2 Missense_Mutation p.I268F 0.24 tolerated(0.72) benign(0.085) TCGA-HB-A3L4-01 1 234528283 234528283 G T TARBP1 Missense_Mutation p.L1526I 0.31 deleterious(0) possibly_damaging(0.882) TCGA-HB-A3L4-01 20 37617551 37617551 G A DHX35 Silent p.T147T 0.24 TCGA-HB-A3L4-01 20 43378937 43378937 T G KCNK15 Missense_Mutation p.W151G 0.37 tolerated(0.09) benign(0) TCGA-HB-A3L4-01 2 162873349 162873349 G T DPP4 Missense_Mutation p.A499D 0.17 tolerated(0.52) benign(0.001) TCGA-HB-A3L4-01 2 189897679 189897679 G A COL5A2 3'UTR 0.90 TCGA-HB-A3L4-01 3 52436186 52436186 C A BAP1 3'UTR 0.11 TCGA-HB-A3L4-01 4 141377825 141377825 A - RP11-542P2.1 Frame_Shift_Del p.L309* 0.44 TCGA-HB-A3L4-01 4 186180114 186180114 G A SNX25 Silent p.Q45Q 0.38 TCGA-HB-A3L4-01 4 36230792 36230792 A T ARAP2 Missense_Mutation p.L106H 0.42 tolerated_low_confidence(0.35) benign(0.401) TCGA-HB-A3L4-01 4 47427786 47427786 C A GABRB1 Silent p.A392A 0.48 TCGA-HB-A3L4-01 5 112222764 112222764 G T REEP5 Silent p.V156V 0.45 TCGA-HB-A3L4-01 5 54624535 54624535 G A SKIV2L2 Silent p.P137P 0.48 TCGA-HB-A3L4-01 6 147103231 147103231 C A ADGB Missense_Mutation p.S1313Y 0.45 deleterious(0) probably_damaging(0.982) TCGA-HB-A3L4-01 6 99728897 99728905 TAAGGCTGC - FAXC 3'UTR 0.33 TCGA-HB-A3L4-01 7 82584755 82584755 C T PCLO Silent p.P1838P 0.87 TCGA-HB-A3L4-01 8 104342132 104342138 GAGAGAG - FZD6 Frame_Shift_Del p.R598* 0.47 TCGA-HB-A3L4-01 8 134147061 134147061 A T TG 3'UTR 0.44 TCGA-HB-A3L4-01 9 128206784 128206784 A G MAPKAP1 Missense_Mutation p.L480P 0.06 tolerated(0.17) probably_damaging(0.968) TCGA-HB-A3L4-01 9 84606180 84606180 T G SPATA31D1 Missense_Mutation p.S265R 0.07 deleterious(0.02) benign(0.351) TCGA-HB-A3L4-01 X 100871412 100871412 G A ARMCX6 Missense_Mutation p.R67W 0.56 deleterious(0.02) benign(0.07) TCGA-HB-A3L4-01 X 111078203 111078203 T G TRPC5 Silent p.V614V 0.45 TCGA-HB-A3L4-01 X 52682511 52682511 G A SSX7 Silent p.D4D 0.30 TCGA-HB-A3L4-01 X 53659510 53659537 GATATTTCTGTGTATAAAGCACATCAAA - HUWE1 Splice_Site p.X190_splice 0.22 TCGA-HB-A3L4-01 X 76875879 76875887 TTGAAGTGG CC ATRX Frame_Shift_Del p.P1750Gfs*4 0.29 TCGA-HB-A3L4-01 X 91878071 91878080 CAGTTCCAAC - PCDH11X 3'UTR 0.23 TCGA-HB-A3YV-01 10 82394162 82394162 C T SH2D4B Intron 0.11 TCGA-HB-A3YV-01 11 22770671 22770671 G T GAS2 Missense_Mutation p.G160V 0.24 deleterious(0) probably_damaging(0.988) TCGA-HB-A3YV-01 11 64884315 64884315 G A ZNHIT2 Silent p.L271L 0.30 TCGA-HB-A3YV-01 11 75152708 75152708 C T GDPD5 Silent p.V436V 0.13 TCGA-HB-A3YV-01 11 8119343 8119343 G C TUB Missense_Mutation p.R378P 0.36 deleterious(0) probably_damaging(0.999) TCGA-HB-A3YV-01 12 120031683 120031683 C G TMEM233 Missense_Mutation p.F10L 0.16 tolerated(1) benign(0.001) TCGA-HB-A3YV-01 12 43748010 43748010 G A ADAMTS20 3'UTR 0.27 TCGA-HB-A3YV-01 12 46244344 46244344 C T ARID2 Missense_Mutation p.S813F 0.24 deleterious_low_confidence(0.03) possibly_damaging(0.73) TCGA-HB-A3YV-01 12 53777058 53777058 G T SP1 Missense_Mutation p.V443F 0.49 tolerated(0.22) benign(0.255) TCGA-HB-A3YV-01 12 58111971 58111971 G A OS9 Missense_Mutation p.A393T 0.37 tolerated(0.36) benign(0.002) TCGA-HB-A3YV-01 12 58111997 58111997 G A OS9 Silent p.E401E 0.37 TCGA-HB-A3YV-01 12 58112779 58112779 G A OS9 Missense_Mutation p.E472K 0.30 deleterious(0.05) benign(0.008) TCGA-HB-A3YV-01 12 58113952 58113952 G C OS9 Silent p.L557L 0.41 TCGA-HB-A3YV-01 12 58114233 58114233 G A OS9 Missense_Mutation p.E604K 0.39 tolerated(0.14) probably_damaging(0.971) TCGA-HB-A3YV-01 12 58114684 58114684 G C OS9 Missense_Mutation p.D666H 0.35 deleterious(0) probably_damaging(0.996) TCGA-HB-A3YV-01 12 58120781 58120781 G A AGAP2 Silent p.V1104V 0.15 TCGA-HB-A3YV-01 12 58120975 58120975 G A AGAP2 Nonsense_Mutation p.Q1040* 0.09 TCGA-HB-A3YV-01 12 75687052 75687052 A T CAPS2 Missense_Mutation p.D399E 0.25 deleterious(0) possibly_damaging(0.718) TCGA-HB-A3YV-01 14 102548534 102548534 T G HSP90AA1 Missense_Mutation p.E790A 0.39 deleterious_low_confidence(0) unknown(0) TCGA-HB-A3YV-01 14 19553472 19553472 G A POTEG Missense_Mutation p.G19D 0.14 tolerated_low_confidence(0.17) benign(0.011) TCGA-HB-A3YV-01 14 20020165 20020165 C T POTEM Missense_Mutation p.G19D 0.10 tolerated_low_confidence(0.16) benign(0.399) TCGA-HB-A3YV-01 14 23991278 23991278 C T ZFHX2 Missense_Mutation p.A2538T 0.30 unknown(0) TCGA-HB-A3YV-01 14 25075694 25075694 A G GZMH 3'UTR 0.31 TCGA-HB-A3YV-01 15 33359026 33359026 G C FMN1 Missense_Mutation p.P354A 0.23 tolerated(0.07) unknown(0) TCGA-HB-A3YV-01 16 31512021 31512021 A T C16orf58 Missense_Mutation p.F149L 0.60 deleterious(0.01) possibly_damaging(0.658) TCGA-HB-A3YV-01 16 57760001 57760001 C T CCDC135 Missense_Mutation p.R594C 0.52 deleterious(0) probably_damaging(1) TCGA-HB-A3YV-01 16 87637100 87637100 G C JPH3 Missense_Mutation p.Q116H 0.46 deleterious(0) possibly_damaging(0.893) TCGA-HB-A3YV-01 17 22024142 22024142 C T MTRNR2L1 3'Flank 0.30 TCGA-HB-A3YV-01 18 10471744 10471744 T G APCDD1 Missense_Mutation p.C154G 0.17 deleterious(0.02) benign(0.156) TCGA-HB-A3YV-01 18 54270145 54270145 G C TXNL1 3'UTR 0.10 TCGA-HB-A3YV-01 19 1816549 1816549 C A REXO1 Missense_Mutation p.A1113S 0.20 tolerated(0.06) possibly_damaging(0.846) TCGA-HB-A3YV-01 19 1819988 1819988 C T REXO1 Silent p.V865V 0.23 TCGA-HB-A3YV-01 19 34685495 34685495 T G LSM14A Missense_Mutation p.C78W 0.25 deleterious(0) probably_damaging(0.97) TCGA-HB-A3YV-01 19 5133999 5133999 G A KDM4B Missense_Mutation p.R671K 0.35 benign(0.364) TCGA-HB-A3YV-01 19 51648209 51648209 A C SIGLEC7 Missense_Mutation p.E251D 0.15 tolerated(0.42) benign(0.001) TCGA-HB-A3YV-01 1 109778719 109778719 A G SARS Missense_Mutation p.I364V 0.24 deleterious(0.02) probably_damaging(1) TCGA-HB-A3YV-01 1 149857699 149857699 G A HIST2H2BE 3'UTR 0.33 TCGA-HB-A3YV-01 1 149857909 149857909 C G HIST2H2BE Missense_Mutation p.E94D 0.12 deleterious_low_confidence(0.02) benign(0.248) TCGA-HB-A3YV-01 1 15420846 15420846 G A KAZN Missense_Mutation p.V465I 0.22 tolerated(0.69) benign(0.003) TCGA-HB-A3YV-01 1 182908516 182908516 G T SHCBP1L Missense_Mutation p.Q291K 0.37 tolerated(0.22) benign(0.228) TCGA-HB-A3YV-01 1 202155418 202155418 G C PTPRVP RNA 0.41 TCGA-HB-A3YV-01 1 37947330 37947330 G T ZC3H12A Missense_Mutation p.G238W 0.37 deleterious(0) probably_damaging(1) TCGA-HB-A3YV-01 1 50575636 50575636 G A ELAVL4 Intron 0.26 TCGA-HB-A3YV-01 1 9322245 9322245 G C H6PD Silent p.R291R 0.33 TCGA-HB-A3YV-01 1 9322246 9322246 C A H6PD Missense_Mutation p.H292N 0.32 tolerated(0.78) benign(0.006) TCGA-HB-A3YV-01 20 35545145 35545145 G A SAMHD1 Missense_Mutation p.R348C 0.15 deleterious(0.03) benign(0.002) TCGA-HB-A3YV-01 2 167138319 167138319 C A SCN9A Splice_Site p.X648_splice 0.31 TCGA-HB-A3YV-01 2 179408710 179408710 T A TTN Missense_Mutation p.D32054V 0.55 TCGA-HB-A3YV-01 2 238950333 238950333 T C UBE2F 3'UTR 0.33 TCGA-HB-A3YV-01 4 16165055 16165055 A - TAPT1 Frame_Shift_Del p.L527* 0.09 TCGA-HB-A3YV-01 4 185940855 185940855 C A HELT Missense_Mutation p.D114E 0.58 tolerated_low_confidence(0.07) benign(0.002) TCGA-HB-A3YV-01 4 30725588 30725588 G A PCDH7 Silent p.A848A 0.45 TCGA-HB-A3YV-01 5 122881404 122881404 C G CSNK1G3 Missense_Mutation p.A16G 0.19 tolerated_low_confidence(0.08) benign(0.012) TCGA-HB-A3YV-01 5 140474762 140474762 G A PCDHB2 Missense_Mutation p.D130N 0.08 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-HB-A3YV-01 5 170336734 170336734 G A RANBP17 Missense_Mutation p.D187N 0.10 tolerated(0.06) probably_damaging(0.964) TCGA-HB-A3YV-01 5 179674413 179674413 G A MAPK9 Intron 0.42 TCGA-HB-A3YV-01 6 121624897 121624897 C T TBC1D32 Missense_Mutation p.E316K 0.57 deleterious(0.01) probably_damaging(0.993) TCGA-HB-A3YV-01 6 144808816 144808816 G A UTRN Missense_Mutation p.E1319K 0.07 deleterious(0) benign(0.246) TCGA-HB-A3YV-01 6 33424474 33424474 C T ZBTB9 3'UTR 0.47 TCGA-HB-A3YV-01 6 50740473 50740473 G A TFAP2D Missense_Mutation p.G419R 0.21 tolerated(0.06) possibly_damaging(0.895) TCGA-HB-A3YV-01 6 99286598 99286598 C T POU3F2 3'UTR 0.18 TCGA-HB-A3YV-01 6 99881221 99881221 G A USP45 3'UTR 0.12 TCGA-HB-A3YV-01 7 107732113 107732113 G A LAMB4 Silent p.Y553Y 0.16 TCGA-HB-A3YV-01 7 117364695 117364695 C G CTTNBP2 Missense_Mutation p.E1451D 0.41 tolerated(0.68) benign(0.007) TCGA-HB-A3YV-01 7 20452127 20452127 G C ITGB8 3'UTR 0.17 TCGA-HB-A3YV-01 7 20725334 20725334 G A ABCB5 Missense_Mutation p.D629N 0.18 tolerated(0.25) benign(0.006) TCGA-HB-A3YV-01 7 4959908 4959908 C T MMD2 Missense_Mutation p.D62N 0.14 tolerated(0.22) benign(0.027) TCGA-HB-A3YV-01 7 794308 794308 C T HEATR2 Silent p.T369T 0.74 TCGA-HB-A3YV-01 7 87175278 87175278 G A ABCB1 Silent p.D596D 0.43 TCGA-HB-A3YV-01 8 113668387 113668387 A G CSMD3 Silent p.Y1000Y 0.45 TCGA-HB-A3YV-01 8 19677110 19677110 T C INTS10 Missense_Mutation p.V75A 0.31 tolerated(0.48) benign(0) TCGA-HB-A3YV-01 8 48845610 48845610 T G PRKDC Silent p.T582T 0.19 TCGA-HB-A3YV-01 8 68423882 68423882 A G CPA6 Missense_Mutation p.I109T 0.56 deleterious(0) possibly_damaging(0.639) TCGA-HB-A3YV-01 9 36124156 36124156 T C RECK 3'UTR 0.20 TCGA-HB-A3YV-01 X 148037966 148037966 C T AFF2 Silent p.N797N 0.49 TCGA-HB-A3YV-01 X 48682631 48682631 G T HDAC6 Missense_Mutation p.G1169V 0.96 deleterious(0.01) probably_damaging(0.998) TCGA-HB-A43Z-01 11 103870794 103870794 T A PDGFD Missense_Mutation p.E105V 0.23 deleterious(0.01) probably_damaging(0.981) TCGA-HB-A43Z-01 11 113660197 113660197 G A ATF4P4 RNA 0.46 TCGA-HB-A43Z-01 11 60170526 60170526 C - MS4A14 Frame_Shift_Del p.L154Ffs*7 0.38 TCGA-HB-A43Z-01 11 67234816 67234816 G C TMEM134 Missense_Mutation p.L125V 0.38 tolerated(0.07) probably_damaging(0.999) TCGA-HB-A43Z-01 11 75277570 75277570 C G SERPINH1 Missense_Mutation p.A59G 0.30 tolerated(0.17) possibly_damaging(0.903) TCGA-HB-A43Z-01 11 94111875 94111875 C A GPR83 3'UTR 0.44 TCGA-HB-A43Z-01 12 111889298 111889298 G C SH2B3 3'UTR 0.20 TCGA-HB-A43Z-01 12 11422603 11422603 T A PRB3 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0) unknown(0) TCGA-HB-A43Z-01 12 123060135 123060135 C T KNTC1 Missense_Mutation p.P810S 0.22 deleterious(0) probably_damaging(0.994) TCGA-HB-A43Z-01 12 6924917 6924917 G A CD4 Intron 0.31 TCGA-HB-A43Z-01 13 96242638 96242638 C G DZIP1 Missense_Mutation p.E580Q 0.16 tolerated(0.09) benign(0.002) TCGA-HB-A43Z-01 14 21861844 21861844 G T CHD8 Missense_Mutation p.T2037N 0.21 tolerated_low_confidence(0.46) benign(0.403) TCGA-HB-A43Z-01 14 93693390 93693390 A T UBR7 3'UTR 0.53 TCGA-HB-A43Z-01 15 23811963 23811963 G A MKRN3 Missense_Mutation p.R345H 0.09 deleterious(0.03) probably_damaging(1) TCGA-HB-A43Z-01 15 65157999 65157999 G A PLEKHO2 Missense_Mutation p.R462K 0.19 tolerated(1) benign(0.015) TCGA-HB-A43Z-01 15 78316558 78316558 C T TBC1D2B Silent p.A470A 0.22 TCGA-HB-A43Z-01 15 90934098 90934098 G T IQGAP1 Missense_Mutation p.A50S 0.21 deleterious(0) probably_damaging(0.964) TCGA-HB-A43Z-01 16 19049220 19049220 C T TMC7 Missense_Mutation p.R344W 0.57 deleterious(0) possibly_damaging(0.84) TCGA-HB-A43Z-01 16 31927666 31927666 A G ZNF267 Missense_Mutation p.Y699C 0.80 tolerated(0.17) possibly_damaging(0.749) TCGA-HB-A43Z-01 16 67683005 67683005 G A RLTPR Missense_Mutation p.V540M 0.82 deleterious(0.01) probably_damaging(0.945) TCGA-HB-A43Z-01 16 72832405 72832405 C T ZFHX3 Silent p.P1392P 0.50 TCGA-HB-A43Z-01 16 89784447 89784447 T G VPS9D1 Intron 0.91 TCGA-HB-A43Z-01 17 38936017 38936017 G A KRT27 Nonsense_Mutation p.R261* 0.61 TCGA-HB-A43Z-01 17 42429915 42429915 C A GRN Silent p.G540G 0.10 TCGA-HB-A43Z-01 17 42929917 42929917 G A EFTUD2 Nonsense_Mutation p.Q859* 0.41 TCGA-HB-A43Z-01 17 66883174 66883174 G A ABCA8 Missense_Mutation p.S1098L 0.24 deleterious(0.01) benign(0.367) TCGA-HB-A43Z-01 17 7577153 7577153 C - TP53 Frame_Shift_Del p.G262Vfs*83 0.45 TCGA-HB-A43Z-01 17 78166396 78166396 G T CARD14 Missense_Mutation p.C445F 0.25 tolerated(0.73) benign(0.001) TCGA-HB-A43Z-01 18 24436238 24436238 G A AQP4 Silent p.D303D 0.17 TCGA-HB-A43Z-01 18 73122721 73122721 T G SMIM21 3'UTR 0.08 TCGA-HB-A43Z-01 18 74587574 74587574 C G ZNF236 Missense_Mutation p.S263C 0.16 deleterious(0) probably_damaging(1) TCGA-HB-A43Z-01 18 74587591 74587591 C T ZNF236 Nonsense_Mutation p.Q269* 0.17 TCGA-HB-A43Z-01 18 74589967 74589967 C G ZNF236 Silent p.V279V 0.17 TCGA-HB-A43Z-01 18 74589978 74589978 C T ZNF236 Missense_Mutation p.P283L 0.16 deleterious(0) possibly_damaging(0.792) TCGA-HB-A43Z-01 18 74592142 74592142 C G ZNF236 Missense_Mutation p.S351C 0.17 deleterious(0.01) possibly_damaging(0.687) TCGA-HB-A43Z-01 19 36290919 36290919 C A PRODH2 3'UTR 0.43 TCGA-HB-A43Z-01 19 40721215 40721215 G A MAP3K10 3'UTR 0.47 TCGA-HB-A43Z-01 19 51670884 51670884 C A CTD-3187F8.14 Intron 0.18 TCGA-HB-A43Z-01 19 58319790 58319790 G A ZNF552 Missense_Mutation p.S281F 0.22 tolerated(0.05) possibly_damaging(0.569) TCGA-HB-A43Z-01 19 58352520 58352520 A T ZNF587B Missense_Mutation p.R160W 0.23 deleterious(0) probably_damaging(0.949) TCGA-HB-A43Z-01 19 58491576 58491576 C G ZNF606 Missense_Mutation p.G158R 0.18 tolerated(0.74) benign(0.002) TCGA-HB-A43Z-01 19 7796175 7796175 C T CLEC4G Missense_Mutation p.G66D 0.53 tolerated(0.2) benign(0.004) TCGA-HB-A43Z-01 1 109766653 109766653 A G SARS Missense_Mutation p.I64V 0.41 tolerated(0.15) benign(0.371) TCGA-HB-A43Z-01 1 248685272 248685272 T C OR2G6 Missense_Mutation p.S109P 0.26 deleterious(0.01) probably_damaging(0.944) TCGA-HB-A43Z-01 1 27943478 27943478 C A FGR Missense_Mutation p.R191I 0.49 deleterious(0.02) possibly_damaging(0.819) TCGA-HB-A43Z-01 1 76384616 76384616 A C ASB17 3'UTR 0.22 TCGA-HB-A43Z-01 20 44512842 44512842 G T ZSWIM1 3'UTR 0.44 TCGA-HB-A43Z-01 21 38126441 38126441 G C HLCS 3'UTR 0.68 TCGA-HB-A43Z-01 21 45842168 45842168 T C TRPM2 Intron 0.14 TCGA-HB-A43Z-01 22 23438606 23438606 G C GNAZ Splice_Site p.X241_splice 0.22 TCGA-HB-A43Z-01 22 24384251 24384251 G T GSTT1 5'UTR 0.57 TCGA-HB-A43Z-01 22 37603800 37603800 G T SSTR3 Missense_Mutation p.P15T 0.30 tolerated(0.09) benign(0.193) TCGA-HB-A43Z-01 2 102796103 102796103 C G IL1R1 3'UTR 0.25 TCGA-HB-A43Z-01 2 12880858 12880858 G A TRIB2 Missense_Mutation p.V324M 0.46 tolerated(0.28) benign(0.149) TCGA-HB-A43Z-01 2 141201918 141201918 C T LRP1B Silent p.E3425E 0.49 TCGA-HB-A43Z-01 2 178490636 178490636 G C PDE11A 3'UTR 0.39 TCGA-HB-A43Z-01 2 179632770 179632770 T A TTN Missense_Mutation p.K3092N 0.55 TCGA-HB-A43Z-01 2 65919069 65919069 T C AC074391.1 RNA 0.36 TCGA-HB-A43Z-01 2 71825861 71825861 G A DYSF Missense_Mutation p.D1248N 0.23 deleterious(0) probably_damaging(1) TCGA-HB-A43Z-01 2 84822877 84822877 C A DNAH6 Silent p.P944P 0.33 TCGA-HB-A43Z-01 3 111760794 111760794 A C TMPRSS7 5'UTR 0.11 TCGA-HB-A43Z-01 3 42661510 42661510 A T NKTR Intron 0.87 TCGA-HB-A43Z-01 3 49936073 49936073 A T MST1R Missense_Mutation p.C533S 0.13 deleterious(0) probably_damaging(0.999) TCGA-HB-A43Z-01 4 15071037 15071037 C T CPEB2 3'UTR 0.48 TCGA-HB-A43Z-01 4 169060727 169060727 G A ANXA10 Missense_Mutation p.G64D 0.51 deleterious(0) possibly_damaging(0.745) TCGA-HB-A43Z-01 4 187158094 187158094 G A KLKB1 Missense_Mutation p.R163Q 0.78 deleterious(0.01) benign(0.213) TCGA-HB-A43Z-01 4 79400619 79400619 T C FRAS1 Silent p.D2730D 0.10 TCGA-HB-A43Z-01 5 1036455 1036455 T A NKD2 Missense_Mutation p.L248Q 0.27 deleterious(0) probably_damaging(0.963) TCGA-HB-A43Z-01 5 13721177 13721177 G T DNAH5 Missense_Mutation p.R4071S 0.62 benign(0) TCGA-HB-A43Z-01 5 13769642 13769642 C A DNAH5 Nonsense_Mutation p.E3230* 0.33 TCGA-HB-A43Z-01 5 140181783 140181783 G A PCDHA3 Missense_Mutation p.C334Y 0.27 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-HB-A43Z-01 5 149433158 149433158 C T CSF1R 3'UTR 0.26 TCGA-HB-A43Z-01 5 174156457 174156457 C A MSX2 Silent p.P225P 0.10 TCGA-HB-A43Z-01 5 175919335 175919335 T A FAF2 Splice_Site p.X161_splice 0.65 TCGA-HB-A43Z-01 5 177651522 177651522 T A PHYKPL Missense_Mutation p.H182L 0.65 tolerated(0.26) benign(0.133) TCGA-HB-A43Z-01 6 150464569 150464569 C G PPP1R14C Missense_Mutation p.L81V 0.16 deleterious(0) probably_damaging(0.995) TCGA-HB-A43Z-01 6 39353432 39353432 T A KIF6 Missense_Mutation p.E609D 0.40 tolerated(0.1) benign(0.003) TCGA-HB-A43Z-01 7 129067061 129067061 G T AHCYL2 3'UTR 0.30 TCGA-HB-A43Z-01 7 48004783 48004783 C T HUS1 3'UTR 0.27 TCGA-HB-A43Z-01 7 48467363 48467363 G A ABCA13 Missense_Mutation p.V4154M 0.33 possibly_damaging(0.786) TCGA-HB-A43Z-01 7 76916777 76916777 G A CCDC146 Silent p.K766K 0.26 TCGA-HB-A43Z-01 7 98601869 98601869 A C TRRAP Missense_Mutation p.K3442Q 0.32 probably_damaging(0.991) TCGA-HB-A43Z-01 8 106814477 106814477 T C ZFPM2 Missense_Mutation p.S723P 0.22 tolerated(0.12) possibly_damaging(0.548) TCGA-HB-A43Z-01 8 106814478 106814478 C T ZFPM2 Missense_Mutation p.S723F 0.22 deleterious(0.01) possibly_damaging(0.73) TCGA-HB-A43Z-01 8 117887056 117887056 T C RAD21 5'UTR 0.21 TCGA-HB-A43Z-01 8 12848476 12848476 A T KIAA1456 5'UTR 0.86 TCGA-HB-A43Z-01 9 101980156 101980156 T A ALG2 3'UTR 0.16 TCGA-HB-A43Z-01 9 117228594 117228594 T C DFNB31 Missense_Mutation p.I306V 0.09 tolerated(0.22) benign(0.03) TCGA-HB-A43Z-01 9 119065139 119065139 C T PAPPA Silent p.F1019F 0.21 TCGA-HB-A43Z-01 9 130279234 130279234 G C FAM129B Missense_Mutation p.S292C 0.23 deleterious(0.05) benign(0.012) TCGA-HB-A43Z-01 9 135942289 135942289 G A CEL Missense_Mutation p.S248N 0.33 deleterious(0.04) possibly_damaging(0.646) TCGA-HB-A43Z-01 9 140287565 140287565 A G EXD3 Intron 0.15 TCGA-HB-A43Z-01 9 140943767 140943767 C T CACNA1B Missense_Mutation p.S1237L 0.20 deleterious(0.02) benign(0.183) TCGA-HB-A43Z-01 9 71395990 71395990 A G FAM122A 3'UTR 0.62 TCGA-HB-A43Z-01 9 86909133 86909133 G A SLC28A3 Silent p.L307L 0.28 TCGA-HB-A43Z-01 9 94058337 94058337 C T AUH Silent p.L207L 0.43 TCGA-HB-A43Z-01 X 36254062 36254062 A - CXorf30 5'UTR 0.33 TCGA-HB-A43Z-01 X 51239035 51239035 C A NUDT11 Missense_Mutation p.D88Y 0.35 deleterious(0) possibly_damaging(0.736) TCGA-HB-A43Z-01 X 65420420 65420420 G C HEPH Missense_Mutation p.D689H 0.84 deleterious(0.04) possibly_damaging(0.738) TCGA-HB-A5W3-01 10 26432374 26432374 T G MYO3A Intron 0.82 TCGA-HB-A5W3-01 10 72083656 72083656 C A LRRC20 Silent p.A121A 0.60 TCGA-HB-A5W3-01 11 6566849 6566849 G T DNHD1 Missense_Mutation p.Q1560H 0.24 benign(0.021) TCGA-HB-A5W3-01 11 73021059 73021059 G T ARHGEF17 Missense_Mutation p.R459L 0.53 deleterious_low_confidence(0) possibly_damaging(0.598) TCGA-HB-A5W3-01 13 114277516 114277516 T G TFDP1 Missense_Mutation p.V34G 0.69 tolerated(0.12) probably_damaging(0.934) TCGA-HB-A5W3-01 15 35271833 35271833 C A AC114546.1 Missense_Mutation p.S20R 0.42 unknown(0) TCGA-HB-A5W3-01 15 50515326 50515326 T C SLC27A2 Silent p.G379G 0.39 TCGA-HB-A5W3-01 17 39976138 39976138 G T FKBP10 Intron 0.57 TCGA-HB-A5W3-01 17 40011164 40011164 C G KLHL11 Missense_Mutation p.V319L 0.33 tolerated(1) benign(0) TCGA-HB-A5W3-01 17 43474297 43474297 C T ARHGAP27 Missense_Mutation p.A305T 0.30 tolerated(0.58) benign(0.004) TCGA-HB-A5W3-01 17 48757261 48757261 G A ABCC3 Splice_Site p.X1269_splice 0.42 TCGA-HB-A5W3-01 17 56492781 56492781 A G RNF43 Missense_Mutation p.L53S 0.05 deleterious(0) probably_damaging(0.944) TCGA-HB-A5W3-01 17 60342110 60342110 T C TBC1D3P2 3'Flank 0.61 TCGA-HB-A5W3-01 17 7579415 7579415 C T TP53 Nonsense_Mutation p.W91* 0.76 TCGA-HB-A5W3-01 18 8244162 8244162 G A PTPRM Missense_Mutation p.D803N 0.51 tolerated(0.08) possibly_damaging(0.768) TCGA-HB-A5W3-01 18 8639235 8639235 A G RAB12 3'UTR 0.44 TCGA-HB-A5W3-01 19 10463145 10463145 G A TYK2 Silent p.L1095L 0.41 TCGA-HB-A5W3-01 1 152191612 152191612 A G HRNR Silent p.H831H 0.31 TCGA-HB-A5W3-01 1 236687692 236687692 T C LGALS8 Intron 0.25 TCGA-HB-A5W3-01 1 99422183 99422183 G A LPPR5 Nonsense_Mutation p.R118* 0.32 TCGA-HB-A5W3-01 2 234255546 234255546 C T SAG Silent p.D402D 0.45 TCGA-HB-A5W3-01 2 55761026 55761026 T C CCDC104 Silent p.L139L 0.11 TCGA-HB-A5W3-01 2 99169399 99169399 C T INPP4A Silent p.G443G 0.27 TCGA-HB-A5W3-01 3 167031769 167031769 A G ZBBX Silent p.N470N 0.47 TCGA-HB-A5W3-01 3 195516077 195516077 A G MUC4 Missense_Mutation p.S792P 0.62 unknown(0) TCGA-HB-A5W3-01 3 70015839 70015839 A G MITF 3'UTR 0.33 TCGA-HB-A5W3-01 4 187454917 187454917 C T MTNR1A Missense_Mutation p.V327M 0.43 tolerated(0.22) benign(0.007) TCGA-HB-A5W3-01 5 140531384 140531384 T G PCDHB6 Missense_Mutation p.S516A 0.04 tolerated(1) benign(0.004) TCGA-HB-A5W3-01 5 147863869 147863869 C G HTR4 Missense_Mutation p.G384R 0.15 tolerated_low_confidence(0.63) benign(0) TCGA-HB-A5W3-01 6 132859927 132859927 A G TAAR9 Missense_Mutation p.I167V 0.08 tolerated(0.94) benign(0.01) TCGA-HB-A5W3-01 6 168461515 168461515 C T FRMD1 Missense_Mutation p.G423E 0.41 tolerated(0.39) benign(0.017) TCGA-HB-A5W3-01 6 43420846 43420846 G C DLK2 Missense_Mutation p.H56Q 0.67 tolerated(0.3) benign(0.021) TCGA-HB-A5W3-01 7 120596064 120596064 A G ING3 Intron 0.78 TCGA-HB-A5W3-01 7 8127858 8127858 A G GLCCI1 3'UTR 0.30 TCGA-HB-A5W3-01 8 124266184 124266185 - T ZHX1 Frame_Shift_Ins p.T668Nfs*3 0.31 TCGA-HB-A5W3-01 8 22079106 22079106 G A PHYHIP Silent p.R251R 0.23 TCGA-HB-A5W3-01 8 29927290 29927290 A G TMEM66 Missense_Mutation p.Y190H 0.09 deleterious(0.03) probably_damaging(0.999) TCGA-HB-A5W3-01 9 134183759 134183759 G T PPAPDC3 3'UTR 0.33 TCGA-HB-A5W3-01 9 35560483 35560483 C T RUSC2 Silent p.I1282I 0.42 TCGA-HB-A5W3-01 X 100229170 100229170 G T ARL13A Silent p.V38V 0.47 TCGA-HB-A5W3-01 X 101821949 101821949 C T NXF4 RNA 0.46 TCGA-HB-A5W3-01 X 138678809 138678809 G T MCF2 Missense_Mutation p.L802I 0.49 tolerated(0.22) benign(0.034) TCGA-HB-A5W3-01 X 32481570 32481570 G T DMD Missense_Mutation p.H1140N 0.51 benign(0.043) TCGA-HB-A5W3-01 X 53239969 53239969 T C KDM5C Missense_Mutation p.N491S 0.42 tolerated(0.1) benign(0.362) TCGA-HB-A5W3-01 X 69176886 69176886 T A EDA Missense_Mutation p.L136M 0.08 deleterious_low_confidence(0.02) unknown(0) TCGA-IE-A3OV-01 10 100008638 100008638 C T LOXL4 3'UTR 0.37 TCGA-IE-A3OV-01 10 52066694 52066694 G A SGMS1 3'UTR 0.27 TCGA-IE-A3OV-01 11 35706846 35706846 T C TRIM44 Silent p.L237L 0.26 TCGA-IE-A3OV-01 11 61282976 61282976 C A SYT7 3'Flank 0.38 TCGA-IE-A3OV-01 11 61725857 61725857 G A BEST1 Intron 0.29 TCGA-IE-A3OV-01 12 109604769 109604769 C T ACACB Missense_Mutation p.R253C 0.31 deleterious(0.02) possibly_damaging(0.582) TCGA-IE-A3OV-01 12 48501209 48501209 G A PFKM Missense_Mutation p.R18H 0.29 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-IE-A3OV-01 12 54383454 54383454 G C HOXC10 3'UTR 0.20 TCGA-IE-A3OV-01 12 69229615 69229615 G A MDM2 Missense_Mutation p.D231N 0.12 tolerated(0.17) possibly_damaging(0.616) TCGA-IE-A3OV-01 12 7188412 7188412 G A C1R Silent p.N462N 0.33 TCGA-IE-A3OV-01 12 8375178 8375178 T G FAM90A1 Missense_Mutation p.Q212P 0.19 tolerated(0.25) benign(0.011) TCGA-IE-A3OV-01 13 21620165 21620165 T A LATS2 Translation_Start_Site p.M1? 0.31 deleterious(0) benign(0.35) TCGA-IE-A3OV-01 13 23910564 23910564 C A SACS Missense_Mutation p.C2484F 0.28 probably_damaging(0.997) TCGA-IE-A3OV-01 14 47613285 47613285 G A MDGA2 Missense_Mutation p.T263I 0.14 deleterious(0) probably_damaging(0.998) TCGA-IE-A3OV-01 14 59112535 59112535 G A DACT1 Silent p.A398A 0.24 TCGA-IE-A3OV-01 14 99636728 99636728 C T BCL11B 3'UTR 0.20 TCGA-IE-A3OV-01 15 100256626 100256626 C G DKFZP779J2370 Missense_Mutation p.S126T 0.21 unknown(0) TCGA-IE-A3OV-01 16 1391868 1391868 G C BAIAP3 Splice_Site p.X294_splice 0.13 TCGA-IE-A3OV-01 16 19883143 19883143 T A GPRC5B Missense_Mutation p.N342I 0.17 tolerated(0.07) benign(0.352) TCGA-IE-A3OV-01 16 50067349 50067349 C A CNEP1R1 Silent p.T88T 0.05 TCGA-IE-A3OV-01 16 5078957 5078957 C T NAGPA Missense_Mutation p.A282T 0.42 probably_damaging(0.999) TCGA-IE-A3OV-01 17 27401360 27401360 C T TIAF1 5'UTR 0.31 TCGA-IE-A3OV-01 17 67266783 67266783 T G ABCA5 Missense_Mutation p.I1001L 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-IE-A3OV-01 17 673297 673297 A C GLOD4 Missense_Mutation p.I244S 0.28 deleterious(0) probably_damaging(1) TCGA-IE-A3OV-01 18 47811580 47811580 G A CXXC1 Missense_Mutation p.P235L 0.17 tolerated(0.33) benign(0.026) TCGA-IE-A3OV-01 19 20975414 20975414 T G ZNF66 Missense_Mutation p.L34V 0.31 deleterious(0) probably_damaging(0.991) TCGA-IE-A3OV-01 19 21719972 21719972 G A ZNF429 Missense_Mutation p.E373K 0.60 deleterious(0.02) possibly_damaging(0.798) TCGA-IE-A3OV-01 19 37309350 37309350 G A ZNF790 Silent p.F632F 0.19 TCGA-IE-A3OV-01 19 51132748 51132748 G T SYT3 Missense_Mutation p.P362T 0.27 deleterious(0) probably_damaging(0.998) TCGA-IE-A3OV-01 19 7598818 7598818 C T MCOLN1 3'UTR 0.15 TCGA-IE-A3OV-01 1 223285856 223285856 T - TLR5 Frame_Shift_Del p.K173Sfs*3 0.30 TCGA-IE-A3OV-01 22 17473054 17473054 G A GAB4 Missense_Mutation p.R63C 0.09 tolerated(0.09) benign(0.001) TCGA-IE-A3OV-01 22 19119283 19119283 T G TSSK2 Missense_Mutation p.V124G 0.22 deleterious(0) benign(0.191) TCGA-IE-A3OV-01 22 26159314 26159314 G A MYO18B Silent p.A52A 0.54 TCGA-IE-A3OV-01 22 26164163 26164163 G - MYO18B Frame_Shift_Del p.D94Tfs*27 0.17 TCGA-IE-A3OV-01 22 38879702 38879702 G A DDX17 3'UTR 0.18 TCGA-IE-A3OV-01 22 50987890 50987890 C T KLHDC7B Missense_Mutation p.A432V 0.15 deleterious(0) probably_damaging(0.998) TCGA-IE-A3OV-01 2 50847269 50847269 T C NRXN1 Missense_Mutation p.D444G 0.50 deleterious(0) probably_damaging(0.985) TCGA-IE-A3OV-01 3 15311315 15311315 C T SH3BP5 Missense_Mutation p.E134K 0.17 deleterious(0.01) probably_damaging(0.98) TCGA-IE-A3OV-01 3 153935690 153935690 G A ARHGEF26 Silent p.K626K 0.36 TCGA-IE-A3OV-01 3 49898704 49898704 C T CAMKV Silent p.L157L 0.29 TCGA-IE-A3OV-01 4 174090036 174090036 G A GALNT7 Missense_Mutation p.S17N 0.27 deleterious_low_confidence(0.03) benign(0.118) TCGA-IE-A3OV-01 4 76841074 76841074 C T NAAA Silent p.E319E 0.25 TCGA-IE-A3OV-01 4 80328766 80328766 T C GK2 Missense_Mutation p.T197A 0.20 deleterious(0) probably_damaging(1) TCGA-IE-A3OV-01 5 140262706 140262706 G T PCDHA13 Missense_Mutation p.V285L 0.22 tolerated_low_confidence(0.14) benign(0.081) TCGA-IE-A3OV-01 5 140564495 140564495 C A PCDHB16 3'UTR 0.23 TCGA-IE-A3OV-01 5 80626231 80626231 C T ACOT12 Silent p.G550G 0.17 TCGA-IE-A3OV-01 6 117198972 117198972 C T RFX6 Silent p.N79N 0.15 TCGA-IE-A3OV-01 6 30078449 30078449 C T TRIM31 Missense_Mutation p.V174I 0.33 tolerated(0.08) benign(0.311) TCGA-IE-A3OV-01 6 50812188 50812188 G T TFAP2B 3'UTR 0.70 TCGA-IE-A3OV-01 6 62390558 62390558 A G KHDRBS2 3'UTR 0.15 TCGA-IE-A3OV-01 6 90448081 90448081 G A MDN1 Missense_Mutation p.R1563C 0.34 benign(0.006) TCGA-IE-A3OV-01 6 90513121 90513121 T C MDN1 Silent p.Q85Q 0.60 TCGA-IE-A3OV-01 7 139653173 139653173 C A TBXAS1 Missense_Mutation p.P200T 0.25 deleterious(0) probably_damaging(1) TCGA-IE-A3OV-01 7 22771493 22771493 T A IL6 3'UTR 0.33 TCGA-IE-A3OV-01 7 99171504 99171504 C T ZNF655 3'UTR 0.32 TCGA-IE-A3OV-01 8 21983187 21983187 C A HR Silent p.L488L 0.25 TCGA-IE-A3OV-01 8 3565992 3565992 T A CSMD1 Missense_Mutation p.K318M 0.33 probably_damaging(0.967) TCGA-IE-A3OV-01 9 34971556 34971556 C T KIAA1045 Silent p.G87G 0.34 TCGA-IE-A4EH-01 12 4488756 4488756 T C FGF23 5'UTR 0.41 TCGA-IE-A4EH-01 13 111164409 111164409 C T COL4A2 Silent p.N1670N 0.08 TCGA-IE-A4EH-01 13 21563188 21563188 G A LATS2 Missense_Mutation p.A244V 0.31 tolerated_low_confidence(0.64) benign(0.001) TCGA-IE-A4EH-01 13 22067469 22067469 T C MICU2 Silent p.Q408Q 0.47 TCGA-IE-A4EH-01 14 23512330 23512330 C T PSMB11 Missense_Mutation p.T299M 0.16 tolerated_low_confidence(0.2) benign(0.001) TCGA-IE-A4EH-01 14 60945096 60945096 G A C14orf39 Missense_Mutation p.T82I 0.33 deleterious(0) probably_damaging(0.934) TCGA-IE-A4EH-01 17 19189049 19189049 C T EPN2 Missense_Mutation p.R238C 0.23 tolerated(0.23) benign(0.003) TCGA-IE-A4EH-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.94 deleterious(0) probably_damaging(0.992) TCGA-IE-A4EH-01 18 44559800 44559800 C T TCEB3B Silent p.P612P 0.38 TCGA-IE-A4EH-01 19 24102852 24102852 T C ZNF726 Missense_Mutation p.M65T 0.33 deleterious(0.02) benign(0.026) TCGA-IE-A4EH-01 19 38378740 38378740 T C WDR87 Silent p.R1818R 0.76 TCGA-IE-A4EH-01 19 53793609 53793609 G A BIRC8 Missense_Mutation p.R7W 0.30 tolerated(0.1) probably_damaging(1) TCGA-IE-A4EH-01 19 805010 805010 C T PTBP1 Intron 0.08 TCGA-IE-A4EH-01 1 201379436 201379436 G A TNNI1 Intron 0.32 TCGA-IE-A4EH-01 1 26604735 26604735 A G CEP85 3'UTR 0.06 TCGA-IE-A4EH-01 1 86913457 86913457 A G CLCA2 Silent p.G660G 0.32 TCGA-IE-A4EH-01 2 106471560 106471560 C G NCK2 Missense_Mutation p.T14S 0.57 tolerated(0.49) benign(0.13) TCGA-IE-A4EH-01 2 112536331 112536331 T A ANAPC1 Missense_Mutation p.D1769V 0.44 tolerated(0.58) benign(0.007) TCGA-IE-A4EH-01 2 128699510 128699510 C A SAP130 3'UTR 0.38 TCGA-IE-A4EH-01 2 169999283 169999283 T C LRP2 Missense_Mutation p.I4337V 0.35 benign(0.002) TCGA-IE-A4EH-01 2 202970560 202970560 G A AC079354.1 Silent p.A467A 0.54 TCGA-IE-A4EH-01 3 127298580 127298580 C T TPRA1 Intron 0.09 TCGA-IE-A4EH-01 3 130293060 130293060 G A COL6A6 Missense_Mutation p.G1080S 0.47 deleterious(0.03) probably_damaging(1) TCGA-IE-A4EH-01 3 47287688 47287688 T A KIF9 Missense_Mutation p.S430C 0.53 deleterious(0.05) benign(0.008) TCGA-IE-A4EH-01 3 51669630 51669630 A C RAD54L2 Missense_Mutation p.K388N 0.43 deleterious(0.01) benign(0.102) TCGA-IE-A4EH-01 3 9476152 9476152 C T SETD5 Silent p.L104L 0.54 TCGA-IE-A4EH-01 4 183836173 183836173 G A DCTD Silent p.V60V 0.08 TCGA-IE-A4EH-01 4 40245144 40245144 C A RHOH Missense_Mutation p.F46L 0.05 tolerated(0.35) benign(0.253) TCGA-IE-A4EH-01 5 174869993 174869993 G A DRD1 Missense_Mutation p.T37M 1.00 deleterious(0) probably_damaging(0.999) TCGA-IE-A4EH-01 6 107956488 107956488 C T SOBP Missense_Mutation p.H814Y 0.08 deleterious(0.04) benign(0.168) TCGA-IE-A4EH-01 6 116875489 116875489 C A FAM26D Missense_Mutation p.A35D 0.53 tolerated(0.15) benign(0.413) TCGA-IE-A4EH-01 7 131190689 131190689 G A PODXL Silent p.L473L 0.09 TCGA-IE-A4EH-01 9 107543716 107543716 G A ABCA1 3'UTR 0.46 TCGA-IE-A4EH-01 9 33918789 33918790 AG - UBE2R2 3'UTR 0.38 TCGA-IE-A4EH-01 9 35078228 35078228 G A FANCG Silent p.H140H 0.25 TCGA-IE-A4EH-01 X 109695944 109695944 A T RGAG1 Missense_Mutation p.Q700L 0.44 deleterious(0.01) benign(0.19) TCGA-IE-A4EH-01 X 124097497 124097497 G C TENM1 Missense_Mutation p.P36A 0.44 tolerated_low_confidence(0.05) benign(0.012) TCGA-IE-A4EH-01 X 124097514 124097514 C G TENM1 Missense_Mutation p.S30T 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.759) TCGA-IE-A4EH-01 X 18257646 18257646 T A SCML2 3'UTR 0.44 TCGA-IE-A4EH-01 X 69550144 69550144 G A KIF4A Missense_Mutation p.D345N 0.47 deleterious(0) possibly_damaging(0.839) TCGA-IE-A4EH-01 X 76909677 76909680 CTTT - ATRX Frame_Shift_Del p.K1409Qfs*80 0.60 TCGA-IE-A4EI-01 11 22399931 22399931 G T SLC17A6 3'UTR 0.44 TCGA-IE-A4EI-01 11 45869043 45869043 T C CRY2 Missense_Mutation p.M22T 0.50 deleterious_low_confidence(0.03) unknown(0) TCGA-IE-A4EI-01 12 64491140 64491140 C G SRGAP1 Missense_Mutation p.L600V 0.38 deleterious(0.01) probably_damaging(0.984) TCGA-IE-A4EI-01 14 23078791 23078791 G A ABHD4 Missense_Mutation p.R305Q 0.64 deleterious(0) possibly_damaging(0.862) TCGA-IE-A4EI-01 15 28501459 28501459 T G HERC2 Missense_Mutation p.H841P 0.21 possibly_damaging(0.731) TCGA-IE-A4EI-01 15 41793952 41793952 G A ITPKA Missense_Mutation p.G236S 0.22 deleterious(0) probably_damaging(0.996) TCGA-IE-A4EI-01 16 1814328 1814328 G C MAPK8IP3 Silent p.L715L 0.46 TCGA-IE-A4EI-01 17 17129630 17129630 G A FLCN Missense_Mutation p.R86W 0.48 deleterious(0) probably_damaging(0.976) TCGA-IE-A4EI-01 17 36091616 36091616 G T HNF1B Missense_Mutation p.P339T 0.38 tolerated(0.17) benign(0.005) TCGA-IE-A4EI-01 17 40441970 40441970 C T STAT5A Missense_Mutation p.A72V 0.35 deleterious(0.02) possibly_damaging(0.781) TCGA-IE-A4EI-01 17 7574019 7574020 CT - TP53 Frame_Shift_Del p.E336Afs*10 0.50 TCGA-IE-A4EI-01 18 29171771 29171771 G A TTR 5'UTR 0.47 TCGA-IE-A4EI-01 19 39973541 39973541 C T TIMM50 Silent p.D195D 0.06 TCGA-IE-A4EI-01 19 50813026 50813026 C A MYH14 Silent p.S2030S 0.30 TCGA-IE-A4EI-01 1 146408160 146408160 C T NBPF12 Silent p.N598N 0.31 TCGA-IE-A4EI-01 1 201009019 201009019 G A CACNA1S Silent p.S1854S 0.26 TCGA-IE-A4EI-01 1 64036710 64036710 A T EFCAB7 Missense_Mutation p.I576F 0.83 deleterious(0) possibly_damaging(0.729) TCGA-IE-A4EI-01 22 20458608 20458608 C A RIMBP3 Silent p.P898P 0.14 TCGA-IE-A4EI-01 22 37480028 37480028 G T TMPRSS6 Intron 0.25 TCGA-IE-A4EI-01 2 20840695 20840695 G A HS1BP3 Intron 0.46 TCGA-IE-A4EI-01 2 237074887 237074887 G A GBX2 Silent p.G239G 0.41 TCGA-IE-A4EI-01 2 47185669 47185669 T A TTC7A Intron 0.46 TCGA-IE-A4EI-01 3 128202738 128202738 G T GATA2 Missense_Mutation p.Q328K 0.23 deleterious(0) probably_damaging(0.949) TCGA-IE-A4EI-01 3 170723133 170723133 G C SLC2A2 Missense_Mutation p.Q302E 0.18 deleterious(0.02) possibly_damaging(0.491) TCGA-IE-A4EI-01 4 13604281 13604281 C T BOD1L1 Missense_Mutation p.D1415N 0.37 benign(0.086) TCGA-IE-A4EI-01 6 29054540 29054540 C T OR2B3 Silent p.L162L 0.25 TCGA-IE-A4EI-01 6 31937190 31937190 G T SKIV2L Missense_Mutation p.R1178L 0.43 deleterious(0.01) probably_damaging(0.971) TCGA-IE-A4EI-01 7 75048006 75048006 A C POM121C 3'UTR 0.42 TCGA-IE-A4EI-01 8 10480360 10480360 G A RP1L1 Missense_Mutation p.R118W 0.30 benign(0.033) TCGA-IE-A4EI-01 8 110980696 110980696 G T KCNV1 Missense_Mutation p.T375N 0.24 tolerated(0.16) possibly_damaging(0.848) TCGA-IE-A4EI-01 8 146202988 146202988 C T ZNF252P RNA 0.36 TCGA-IE-A4EI-01 9 124110391 124110391 T C AL161784.1 Missense_Mutation p.F54S 0.33 possibly_damaging(0.514) TCGA-IE-A4EI-01 9 131107639 131107639 C T SLC27A4 Silent p.L123L 0.33 TCGA-IE-A4EI-01 9 35100719 35100719 C T STOML2 Missense_Mutation p.G270E 0.34 deleterious(0) probably_damaging(1) TCGA-IE-A4EI-01 9 5720614 5720614 T - KIAA1432 Frame_Shift_Del p.V195Efs*62 0.41 TCGA-IE-A4EI-01 9 96318801 96318801 G A FAM120A Silent p.G804G 0.31 TCGA-IE-A4EI-01 X 106061981 106061981 A T TBC1D8B Missense_Mutation p.Q73H 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-IE-A4EI-01 X 134713794 134713794 C T DDX26B Missense_Mutation p.A697V 0.27 tolerated(0.33) benign(0.003) TCGA-IE-A4EI-01 X 140953333 140953333 G T MAGEC3 Missense_Mutation p.R67M 0.31 deleterious_low_confidence(0) possibly_damaging(0.507) TCGA-IE-A4EI-01 X 53573735 53573735 C G HUWE1 Missense_Mutation p.G3563A 0.27 unknown(0) TCGA-IE-A4EI-01 X 77151053 77151056 GCTG - MAGT1 5'UTR 0.56 TCGA-IE-A4EJ-01 10 120896676 120896676 C A FAM45A 3'UTR 0.12 TCGA-IE-A4EJ-01 10 27821508 27821508 G C RAB18 Missense_Mutation p.V87L 0.27 deleterious(0.02) possibly_damaging(0.563) TCGA-IE-A4EJ-01 10 7409806 7409806 C T SFMBT2 Missense_Mutation p.E81K 0.41 deleterious(0) probably_damaging(0.999) TCGA-IE-A4EJ-01 10 96731898 96731898 G T CYP2C9 Missense_Mutation p.S286I 0.20 deleterious(0.02) benign(0.413) TCGA-IE-A4EJ-01 11 115047211 115047211 T C CADM1 Missense_Mutation p.K438E 0.14 deleterious(0) possibly_damaging(0.668) TCGA-IE-A4EJ-01 11 18159293 18159293 G A MRGPRX3 Missense_Mutation p.A182T 0.08 tolerated(0.21) benign(0.106) TCGA-IE-A4EJ-01 11 48510419 48510419 T A OR4A47 Silent p.L25L 0.51 TCGA-IE-A4EJ-01 11 55579035 55579035 C T OR5L1 Silent p.F31F 0.24 TCGA-IE-A4EJ-01 11 59271504 59271504 C A OR4D11 Silent p.G152G 0.08 TCGA-IE-A4EJ-01 11 59271507 59271507 T G OR4D11 Missense_Mutation p.F153L 0.09 tolerated(0.06) benign(0.155) TCGA-IE-A4EJ-01 11 61595862 61595862 C T FADS2 5'UTR 0.24 TCGA-IE-A4EJ-01 11 62572871 62572871 C G NXF1 5'UTR 0.34 TCGA-IE-A4EJ-01 11 65266542 65266542 C T MALAT1 RNA 0.15 TCGA-IE-A4EJ-01 11 6891749 6891749 C G OR10A2 Missense_Mutation p.P255R 0.06 deleterious(0.01) probably_damaging(0.976) TCGA-IE-A4EJ-01 11 87033081 87033081 G A TMEM135 3'UTR 0.18 TCGA-IE-A4EJ-01 12 104682750 104682750 G T TXNRD1 Missense_Mutation p.A116S 0.18 tolerated(0.34) benign(0.006) TCGA-IE-A4EJ-01 12 113327846 113327846 C A RPH3A Silent p.T527T 0.35 TCGA-IE-A4EJ-01 12 118199247 118199247 C T KSR2 Silent p.P185P 0.38 TCGA-IE-A4EJ-01 12 12815077 12815077 G C GPR19 Nonsense_Mutation p.Y102* 0.18 TCGA-IE-A4EJ-01 12 6437043 6437043 T G PLEKHG6 Missense_Mutation p.L765R 0.33 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IE-A4EJ-01 12 71148109 71148109 G A PTPRR Intron 0.22 TCGA-IE-A4EJ-01 12 72667157 72667157 T C TRHDE Missense_Mutation p.F200S 0.08 tolerated(0.77) benign(0.001) TCGA-IE-A4EJ-01 14 101531999 101531999 T C MIR369 RNA 0.10 TCGA-IE-A4EJ-01 15 101715997 101715997 C T CHSY1 3'UTR 0.19 TCGA-IE-A4EJ-01 15 102298070 102298070 C T DNM1P47 RNA 0.38 TCGA-IE-A4EJ-01 15 90799414 90799414 G A TTLL13 Missense_Mutation p.R197H 0.35 deleterious(0) possibly_damaging(0.781) TCGA-IE-A4EJ-01 16 1262089 1262089 G A CACNA1H Silent p.A1570A 0.25 TCGA-IE-A4EJ-01 16 4626182 4626182 C T C16orf96 Silent p.T567T 0.16 TCGA-IE-A4EJ-01 17 17380342 17380342 C G MED9 5'UTR 0.13 TCGA-IE-A4EJ-01 17 7578211 7578211 C G TP53 Missense_Mutation p.R213P 0.60 deleterious(0) probably_damaging(1) TCGA-IE-A4EJ-01 17 80208020 80208020 G A CSNK1D Intron 0.23 TCGA-IE-A4EJ-01 17 8449977 8449977 G A MYH10 Missense_Mutation p.A388V 0.08 benign(0.343) TCGA-IE-A4EJ-01 18 7231238 7231238 G T LRRC30 Silent p.L34L 0.12 TCGA-IE-A4EJ-01 19 15276877 15276877 A G NOTCH3 Silent p.A1796A 0.12 TCGA-IE-A4EJ-01 19 22941446 22941446 T C ZNF99 Missense_Mutation p.E422G 0.16 deleterious(0.02) probably_damaging(0.944) TCGA-IE-A4EJ-01 19 42490069 42490069 C A ATP1A3 Missense_Mutation p.G198C 0.37 tolerated(0.05) probably_damaging(0.993) TCGA-IE-A4EJ-01 1 149858196 149858196 G A HIST2H2BE 5'UTR 0.09 TCGA-IE-A4EJ-01 1 158435375 158435375 G A OR10K1 Silent p.V8V 0.15 TCGA-IE-A4EJ-01 1 167095879 167095879 C T DUSP27 Missense_Mutation p.A504V 0.17 tolerated(0.43) benign(0.1) TCGA-IE-A4EJ-01 1 17029228 17029228 G A ESPNP RNA 0.05 TCGA-IE-A4EJ-01 1 31837229 31837231 GTT - ZCCHC17 3'UTR 0.58 TCGA-IE-A4EJ-01 1 82408662 82408662 G A LPHN2 Missense_Mutation p.C136Y 0.15 deleterious(0.05) probably_damaging(0.986) TCGA-IE-A4EJ-01 20 49626065 49626065 G A KCNG1 Intron 0.18 TCGA-IE-A4EJ-01 20 62421656 62421656 C T ZBTB46 Missense_Mutation p.S152N 0.29 tolerated(0.18) benign(0.005) TCGA-IE-A4EJ-01 22 23011139 23011139 A G IGLV3-27 Missense_Mutation p.K68E 0.44 tolerated(0.95) benign(0.004) TCGA-IE-A4EJ-01 22 36678786 36678786 T C MYH9 Silent p.K1937K 0.73 TCGA-IE-A4EJ-01 2 201521613 201521613 C T AOX1 Missense_Mutation p.H1042Y 0.31 deleterious(0) probably_damaging(1) TCGA-IE-A4EJ-01 2 241697823 241697823 C T KIF1A Missense_Mutation p.G846R 0.39 deleterious(0.04) probably_damaging(0.994) TCGA-IE-A4EJ-01 2 74273485 74273485 G A TET3 Silent p.R12R 0.21 TCGA-IE-A4EJ-01 2 84517888 84517888 G A FUNDC2P2 RNA 0.22 TCGA-IE-A4EJ-01 3 124436186 124436186 C A KALRN Missense_Mutation p.A1093D 0.41 deleterious(0) probably_damaging(0.999) TCGA-IE-A4EJ-01 3 39172247 39172247 G A TTC21A Missense_Mutation p.C799Y 0.28 tolerated(1) benign(0.038) TCGA-IE-A4EJ-01 3 53837530 53837530 G - CACNA1D Frame_Shift_Del p.C1859Sfs*115 0.22 TCGA-IE-A4EJ-01 4 147560580 147560580 G A POU4F2 Silent p.P96P 0.20 TCGA-IE-A4EJ-01 4 71021770 71021770 G C C4orf40 Splice_Site p.X18_splice 0.05 TCGA-IE-A4EJ-01 5 140215733 140215733 C A PCDHA7 Missense_Mutation p.H589N 0.20 deleterious_low_confidence(0.01) benign(0.332) TCGA-IE-A4EJ-01 5 80508333 80508333 G T RASGRF2 Missense_Mutation p.R1102I 0.11 deleterious(0.01) probably_damaging(0.955) TCGA-IE-A4EJ-01 6 158924151 158924151 T A TULP4 Silent p.S1152S 0.23 TCGA-IE-A4EJ-01 6 36283550 36283550 T G C6orf222 3'UTR 0.15 TCGA-IE-A4EJ-01 6 41707609 41707609 C A PGC Silent p.L281L 0.07 TCGA-IE-A4EJ-01 6 49427192 49427192 A G MUT 5'UTR 0.12 TCGA-IE-A4EJ-01 7 107626774 107626774 G A LAMB1 Missense_Mutation p.S153L 0.15 deleterious(0) probably_damaging(1) TCGA-IE-A4EJ-01 7 150027476 150027476 C A ZBED6CL 5'UTR 0.17 TCGA-IE-A4EJ-01 7 150174547 150174547 C T GIMAP8 Silent p.Y559Y 0.19 TCGA-IE-A4EJ-01 7 22852686 22852686 C A TOMM7 3'UTR 0.10 TCGA-IE-A4EJ-01 8 29194480 29194480 C T DUSP4 3'UTR 0.20 TCGA-IE-A4EJ-01 8 74203808 74203808 C T RPL7 Missense_Mutation p.A173T 0.20 tolerated(0.24) benign(0.002) TCGA-IE-A4EJ-01 8 87464902 87464902 A T WWP1 Missense_Mutation p.E796D 0.17 deleterious(0) probably_damaging(0.929) TCGA-IE-A4EJ-01 9 139835424 139835424 G A FBXW5 Missense_Mutation p.R553W 0.16 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-IE-A4EJ-01 9 27566948 27566948 T C C9orf72 Silent p.G57G 0.10 TCGA-IE-A4EJ-01 9 27949399 27949399 T A LINGO2 Missense_Mutation p.E424V 0.28 deleterious(0) probably_damaging(0.998) TCGA-IE-A4EJ-01 9 73028893 73028893 C T KLF9 5'UTR 0.41 TCGA-IE-A4EJ-01 X 102931039 102931039 A - MORF4L2 3'UTR 0.08 TCGA-IE-A4EJ-01 X 13789504 13789504 T - GPM6B 3'UTR 0.17 TCGA-IE-A4EJ-01 X 153135044 153135044 T C L1CAM Missense_Mutation p.M400V 0.24 tolerated(0.1) possibly_damaging(0.758) TCGA-IE-A4EJ-01 X 154490326 154490326 C T RAB39B Missense_Mutation p.R135H 0.17 tolerated(0.48) possibly_damaging(0.751) TCGA-IE-A4EJ-01 X 21627458 21627458 G T CNKSR2 Missense_Mutation p.R805S 0.15 deleterious(0.03) possibly_damaging(0.722) TCGA-IE-A4EJ-01 X 24665266 24665266 C A PCYT1B 5'UTR 0.20 TCGA-IE-A4EJ-01 X 30327223 30327223 G A NR0B1 Silent p.S86S 0.15 TCGA-IE-A4EJ-01 X 34961413 34961413 C A FAM47B Silent p.P155P 0.09 TCGA-IE-A4EJ-01 X 48434970 48434970 C T RBM3 Missense_Mutation p.R131C 0.19 tolerated(0.05) benign(0.097) TCGA-IE-A4EJ-01 X 48772492 48772492 G T PIM2 Missense_Mutation p.P134T 0.26 tolerated(0.42) benign(0.035) TCGA-IE-A4EJ-01 X 76761237 76761237 A C ATRX 3'UTR 0.12 TCGA-IE-A4EJ-01 X 76855962 76855962 T A ATRX Missense_Mutation p.S1880C 0.17 probably_damaging(0.997) TCGA-IE-A4EJ-01 X 76909659 76909659 G A ATRX Nonsense_Mutation p.Q1416* 0.59 TCGA-IE-A4EJ-01 X 83128692 83128692 G A CYLC1 Missense_Mutation p.V326I 0.20 tolerated(0.22) unknown(0) TCGA-IE-A6BZ-01 10 11375609 11375609 T A CELF2 3'UTR 0.50 TCGA-IE-A6BZ-01 10 124358313 124358313 A T DMBT1 Missense_Mutation p.R994W 0.47 deleterious(0) probably_damaging(0.987) TCGA-IE-A6BZ-01 10 28229609 28229609 C T ARMC4 Silent p.T623T 0.66 TCGA-IE-A6BZ-01 10 53457702 53457702 G A CSTF2T Silent p.V536V 0.21 TCGA-IE-A6BZ-01 11 18159833 18159833 C G MRGPRX3 3'UTR 0.48 TCGA-IE-A6BZ-01 11 30557581 30557581 C A MPPED2 Silent p.L90L 0.08 TCGA-IE-A6BZ-01 11 3423884 3423884 C T TSSC2 RNA 0.46 TCGA-IE-A6BZ-01 11 57582937 57582937 G A CTNND1 Missense_Mutation p.D925N 0.05 tolerated(0.05) benign(0.003) TCGA-IE-A6BZ-01 12 22697034 22697034 C T C2CD5 Silent p.V17V 0.63 TCGA-IE-A6BZ-01 12 22697070 22697070 C T C2CD5 Silent p.L5L 0.60 TCGA-IE-A6BZ-01 13 111080930 111080930 C T COL4A2 Silent p.P159P 0.31 TCGA-IE-A6BZ-01 13 76395653 76395653 A T LMO7 Nonsense_Mutation p.K617* 0.77 TCGA-IE-A6BZ-01 14 100173109 100173109 A G CYP46A1 Missense_Mutation p.D190G 0.69 deleterious(0) probably_damaging(0.999) TCGA-IE-A6BZ-01 14 39627487 39627487 A G TRAPPC6B Splice_Site p.X89_splice 0.24 TCGA-IE-A6BZ-01 14 60193761 60193761 C A RTN1 Silent p.T547T 0.30 TCGA-IE-A6BZ-01 15 26791184 26791184 G A GABRB3 3'UTR 0.88 TCGA-IE-A6BZ-01 15 42052560 42052560 A G MGA Missense_Mutation p.S2411G 0.08 tolerated(0.22) benign(0.007) TCGA-IE-A6BZ-01 15 48702832 48702832 T C FBN1 3'UTR 0.24 TCGA-IE-A6BZ-01 15 90814896 90814896 C T NGRN Missense_Mutation p.A251V 0.63 tolerated(0.3) benign(0.007) TCGA-IE-A6BZ-01 16 23197641 23197641 G A SCNN1G Missense_Mutation p.V17M 0.89 tolerated(0.11) possibly_damaging(0.476) TCGA-IE-A6BZ-01 17 10426842 10426842 T C MYH2 Missense_Mutation p.K1815E 0.15 deleterious(0.01) possibly_damaging(0.692) TCGA-IE-A6BZ-01 17 15620733 15620733 G A ZNF286A 3'UTR 0.11 TCGA-IE-A6BZ-01 17 28656546 28656546 A T TMIGD1 Missense_Mutation p.S28R 0.50 deleterious(0.01) possibly_damaging(0.712) TCGA-IE-A6BZ-01 17 39155680 39155680 A G KRTAP3-2 3'UTR 0.88 TCGA-IE-A6BZ-01 17 73228049 73228049 T A NUP85 Nonsense_Mutation p.C457* 0.71 TCGA-IE-A6BZ-01 17 77769090 77769090 G A CBX8 Missense_Mutation p.R172W 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.689) TCGA-IE-A6BZ-01 18 77896763 77896763 T G ADNP2 3'UTR 0.04 TCGA-IE-A6BZ-01 18 77897070 77897070 G A ADNP2 3'UTR 0.22 TCGA-IE-A6BZ-01 18 77897086 77897086 G A ADNP2 3'UTR 0.18 TCGA-IE-A6BZ-01 18 77897404 77897404 A C ADNP2 3'UTR 0.04 TCGA-IE-A6BZ-01 18 77897496 77897496 T G ADNP2 3'UTR 0.10 TCGA-IE-A6BZ-01 18 77897566 77897566 A G ADNP2 3'UTR 0.05 TCGA-IE-A6BZ-01 18 77897644 77897644 G A ADNP2 3'UTR 0.28 TCGA-IE-A6BZ-01 18 77897684 77897684 G C ADNP2 3'UTR 0.21 TCGA-IE-A6BZ-01 19 41404425 41404425 C T CYP2G1P RNA 0.35 TCGA-IE-A6BZ-01 19 42085857 42085857 G A CEACAM21 Silent p.L192L 0.39 TCGA-IE-A6BZ-01 19 44470547 44470547 A G ZNF221 Missense_Mutation p.Q298R 0.52 tolerated(0.2) benign(0.06) TCGA-IE-A6BZ-01 19 49973856 49973856 C T ALDH16A1 3'UTR 0.26 TCGA-IE-A6BZ-01 19 56011757 56011768 TGTTAGCACCAC - SSC5D In_Frame_Del p.V761_T764del 0.25 TCGA-IE-A6BZ-01 19 57328017 57328017 C G PEG3 Missense_Mutation p.R598P 0.08 tolerated(0.28) benign(0.003) TCGA-IE-A6BZ-01 1 151104667 151104667 G A SEMA6C 3'UTR 0.20 TCGA-IE-A6BZ-01 1 32148821 32148821 C T COL16A1 Missense_Mutation p.G815S 0.08 unknown(0) TCGA-IE-A6BZ-01 20 40044280 40044280 T C CHD6 Splice_Site p.X2163_splice 0.13 TCGA-IE-A6BZ-01 22 39101991 39101991 G T GTPBP1 Missense_Mutation p.D11Y 0.50 deleterious_low_confidence(0.02) benign(0.417) TCGA-IE-A6BZ-01 2 113138400 113138400 C T RGPD8 Splice_Site p.X1687_splice 0.34 TCGA-IE-A6BZ-01 2 175287648 175287648 C T SCRN3 Nonsense_Mutation p.R264* 0.93 TCGA-IE-A6BZ-01 2 242147068 242147068 G A ANO7 Missense_Mutation p.A408T 0.93 tolerated(0.84) benign(0.019) TCGA-IE-A6BZ-01 2 79254977 79254977 T C REG3G Silent p.D126D 0.05 TCGA-IE-A6BZ-01 3 123010114 123010114 C T ADCY5 Missense_Mutation p.R1058H 0.42 tolerated(0.1) benign(0.103) TCGA-IE-A6BZ-01 4 69107497 69107497 A C TMPRSS11B Missense_Mutation p.W12G 0.10 tolerated(0.09) benign(0.002) TCGA-IE-A6BZ-01 5 140223108 140223108 G A PCDHA8 Silent p.A734A 0.05 TCGA-IE-A6BZ-01 5 140870899 140870899 C T PCDHGC5 Silent p.L698L 0.07 TCGA-IE-A6BZ-01 5 14359550 14359550 G T TRIO Silent p.A767A 0.51 TCGA-IE-A6BZ-01 5 149747446 149747446 C T TCOF1 Missense_Mutation p.A115V 0.43 tolerated(0.23) benign(0.124) TCGA-IE-A6BZ-01 6 36990132 36990132 C T FGD2 Missense_Mutation p.R482W 0.23 deleterious(0) probably_damaging(1) TCGA-IE-A6BZ-01 6 44122120 44122120 G A TMEM63B Missense_Mutation p.D749N 0.16 tolerated(0.07) benign(0.168) TCGA-IE-A6BZ-01 6 46766860 46766860 G A MEP1A Silent p.L68L 0.19 TCGA-IE-A6BZ-01 6 73904622 73904622 A G KCNQ5 Missense_Mutation p.R781G 0.07 tolerated_low_confidence(0.08) benign(0.034) TCGA-IE-A6BZ-01 8 110099856 110099856 G A TRHR Missense_Mutation p.G39S 0.49 deleterious(0.01) probably_damaging(1) TCGA-IE-A6BZ-01 8 55047874 55047874 C T MRPL15 Missense_Mutation p.R11W 0.46 tolerated(0.05) benign(0.037) TCGA-IE-A6BZ-01 9 118949745 118949745 G T PAPPA Missense_Mutation p.S243I 0.61 deleterious(0) benign(0.2) TCGA-IE-A6BZ-01 9 135959920 135959920 G A CELP RNA 0.21 TCGA-IE-A6BZ-01 9 2161707 2161707 G T SMARCA2 Nonsense_Mutation p.E1335* 0.26 TCGA-IE-A6BZ-01 9 33675550 33675550 G A PTENP1 RNA 0.47 TCGA-IE-A6BZ-01 9 35829952 35829952 G C TMEM8B Intron 0.39 TCGA-IE-A6BZ-01 9 94499672 94499672 C T ROR2 Splice_Site p.X208_splice 0.35 TCGA-IE-A6BZ-01 9 97087709 97087709 G C NUTM2F Missense_Mutation p.A175G 0.08 tolerated(0.08) benign(0.151) TCGA-IE-A6BZ-01 X 100349695 100349695 G A TMEM35 Missense_Mutation p.R85H 0.44 tolerated(0.33) benign(0.019) TCGA-IE-A6BZ-01 X 114425140 114425140 G A RBMXL3 Missense_Mutation p.R379Q 0.42 tolerated_low_confidence(0.2) benign(0.238) TCGA-IE-A6BZ-01 X 117959330 117959330 A T ZCCHC12 Silent p.A41A 0.47 TCGA-IE-A6BZ-01 X 135427331 135427331 C T GPR112 Missense_Mutation p.T489I 0.51 deleterious(0.02) benign(0.058) TCGA-IE-A6BZ-01 X 30747866 30747866 T C GK 3'UTR 0.26 TCGA-IE-A6BZ-01 X 53627148 53627148 G A HUWE1 Silent p.D1031D 0.07 TCGA-IF-A4AJ-01 11 123810923 123810923 G A OR4D5 Silent p.V200V 0.26 TCGA-IF-A4AJ-01 11 31804979 31804979 C T ELP4 Silent p.S394S 0.12 TCGA-IF-A4AJ-01 11 56409671 56409671 G A OR5AP2 Missense_Mutation p.S82F 0.33 deleterious(0) possibly_damaging(0.62) TCGA-IF-A4AJ-01 11 61058331 61058331 C T VWCE Missense_Mutation p.A122T 0.24 deleterious(0) probably_damaging(0.977) TCGA-IF-A4AJ-01 11 63764938 63764938 C G OTUB1 Missense_Mutation p.P246A 0.26 tolerated(0.77) benign(0) TCGA-IF-A4AJ-01 11 71164372 71164372 C T NADSYN1 Silent p.C10C 0.30 TCGA-IF-A4AJ-01 11 77629129 77629132 TAGA CAGAT INTS4 Intron 0.16 TCGA-IF-A4AJ-01 11 88911582 88911582 G A TYR Missense_Mutation p.G154E 0.26 tolerated(0.07) possibly_damaging(0.796) TCGA-IF-A4AJ-01 12 110370737 110370737 G A GIT2 3'UTR 0.77 TCGA-IF-A4AJ-01 12 1988202 1988202 G A CACNA2D4 Nonsense_Mutation p.R522* 0.22 TCGA-IF-A4AJ-01 12 32908155 32908155 C A YARS2 Missense_Mutation p.E218D 0.21 deleterious(0) probably_damaging(0.997) TCGA-IF-A4AJ-01 13 24519966 24519966 C T ANKRD20A19P RNA 0.47 TCGA-IF-A4AJ-01 13 48953730 48953730 C T RB1 Nonsense_Mutation p.R445* 0.78 TCGA-IF-A4AJ-01 14 33015886 33015886 C G AKAP6 Nonsense_Mutation p.S676* 0.35 TCGA-IF-A4AJ-01 15 42120356 42120356 G C JMJD7-PLA2G4B Missense_Mutation p.E12Q 0.13 tolerated_low_confidence(0.19) benign(0.015) TCGA-IF-A4AJ-01 15 43656522 43656522 C T ZSCAN29 Silent p.Q427Q 0.14 TCGA-IF-A4AJ-01 15 63363715 63363715 A G TPM1 3'UTR 0.18 TCGA-IF-A4AJ-01 16 31409218 31409218 G A ITGAD Missense_Mutation p.D139N 0.14 tolerated(0.41) benign(0.023) TCGA-IF-A4AJ-01 16 70902531 70902531 G C HYDIN Missense_Mutation p.T3751R 0.23 probably_damaging(0.934) TCGA-IF-A4AJ-01 17 16342924 16342925 GT - TRPV2 3'Flank 0.31 TCGA-IF-A4AJ-01 17 6606359 6606359 C T SLC13A5 Missense_Mutation p.A216T 0.34 deleterious(0) probably_damaging(0.98) TCGA-IF-A4AJ-01 17 6913105 6913105 A G ALOX12 Missense_Mutation p.H527R 0.37 tolerated(0.1) benign(0.026) TCGA-IF-A4AJ-01 17 7578535 7578535 T C TP53 Missense_Mutation p.K132R 0.53 deleterious(0.01) probably_damaging(1) TCGA-IF-A4AJ-01 17 80560859 80560859 G C FOXK2 3'UTR 0.38 TCGA-IF-A4AJ-01 17 8167128 8167128 G A PFAS Nonsense_Mutation p.W555* 0.21 TCGA-IF-A4AJ-01 18 12427223 12427223 C T SLMO1 Silent p.T122T 0.55 TCGA-IF-A4AJ-01 18 14132371 14132371 T A ZNF519 5'UTR 0.31 TCGA-IF-A4AJ-01 18 215471 215471 C T THOC1 Missense_Mutation p.E546K 0.24 tolerated(0.14) benign(0.119) TCGA-IF-A4AJ-01 18 3879582 3879582 C T DLGAP1 Missense_Mutation p.V163I 0.34 tolerated(0.37) benign(0.001) TCGA-IF-A4AJ-01 18 42530827 42530827 A G SETBP1 Missense_Mutation p.T508A 0.28 tolerated(0.77) benign(0.001) TCGA-IF-A4AJ-01 18 54605777 54605777 C T WDR7 Missense_Mutation p.T1282M 0.20 deleterious(0) possibly_damaging(0.8) TCGA-IF-A4AJ-01 19 35832259 35832259 C T CD22 Silent p.D507D 0.31 TCGA-IF-A4AJ-01 19 37367976 37367976 C T ZNF345 Nonsense_Mutation p.R82* 0.23 TCGA-IF-A4AJ-01 19 51527946 51527946 C T KLK11 Missense_Mutation p.A81T 0.46 tolerated(0.08) benign(0.205) TCGA-IF-A4AJ-01 19 52869687 52869687 C G ZNF610 Silent p.V352V 0.21 TCGA-IF-A4AJ-01 1 115419372 115419372 G T SYCP1 Nonsense_Mutation p.E248* 0.16 TCGA-IF-A4AJ-01 1 155287648 155287648 T G FDPS Intron 0.35 TCGA-IF-A4AJ-01 1 157771769 157771769 G A FCRL1 Silent p.Y274Y 0.25 TCGA-IF-A4AJ-01 1 16913618 16913618 T G NBPF1 Missense_Mutation p.K235N 0.24 deleterious(0.04) possibly_damaging(0.607) TCGA-IF-A4AJ-01 1 179322767 179322767 C A SOAT1 Nonsense_Mutation p.Y548* 0.38 TCGA-IF-A4AJ-01 1 40027754 40027754 G A PABPC4 Silent p.L628L 0.43 TCGA-IF-A4AJ-01 1 53392982 53392982 G A SCP2 5'UTR 0.15 TCGA-IF-A4AJ-01 1 91404037 91404037 C A ZNF644 Missense_Mutation p.L958F 0.21 tolerated(0.2) probably_damaging(0.999) TCGA-IF-A4AJ-01 20 47864951 47864951 T C ZNFX1 Missense_Mutation p.Y1537C 0.19 tolerated(0.06) possibly_damaging(0.784) TCGA-IF-A4AJ-01 22 23264957 23264957 A T IGLC7 Nonsense_Mutation p.K65* 0.24 TCGA-IF-A4AJ-01 22 37266539 37266539 A T NCF4 Missense_Mutation p.Q142L 0.24 deleterious(0.01) possibly_damaging(0.854) TCGA-IF-A4AJ-01 22 39909888 39909888 C T MIEF1 Missense_Mutation p.L318F 0.23 tolerated(0.51) possibly_damaging(0.475) TCGA-IF-A4AJ-01 2 130807609 130807609 G T CYP4F27P 5'Flank 0.19 TCGA-IF-A4AJ-01 2 166535783 166535783 T A CSRNP3 Silent p.A426A 0.16 TCGA-IF-A4AJ-01 2 237374267 237374267 C A IQCA1 Missense_Mutation p.K269N 0.27 tolerated(0.13) benign(0.258) TCGA-IF-A4AJ-01 3 130187932 130187932 G A COL6A5 Missense_Mutation p.V2362I 0.50 tolerated(0.25) benign(0.019) TCGA-IF-A4AJ-01 3 195515857 195515857 G A MUC4 Missense_Mutation p.S865F 0.27 unknown(0) TCGA-IF-A4AJ-01 3 42929043 42929043 A G RP11-141M3.5 RNA 0.17 TCGA-IF-A4AJ-01 3 43121738 43121738 T C POMGNT2 Missense_Mutation p.M396V 0.36 tolerated(0.09) benign(0.005) TCGA-IF-A4AJ-01 3 68594359 68594359 A C FAM19A1 3'UTR 0.34 TCGA-IF-A4AJ-01 4 166794913 166794913 T A TLL1 5'UTR 0.58 TCGA-IF-A4AJ-01 5 140750156 140750156 C A PCDHGB3 Missense_Mutation p.N65K 0.23 tolerated(1) benign(0.012) TCGA-IF-A4AJ-01 5 140896391 140896391 G A DIAPH1 3'UTR 0.40 TCGA-IF-A4AJ-01 5 90052854 90052854 T A GPR98 Missense_Mutation p.V3939D 0.67 possibly_damaging(0.8) TCGA-IF-A4AJ-01 6 46216533 46216533 G A RCAN2 Missense_Mutation p.S109F 0.65 deleterious(0) possibly_damaging(0.763) TCGA-IF-A4AJ-01 7 24324917 24324917 G A NPY Missense_Mutation p.V20M 0.26 tolerated(0.06) benign(0.344) TCGA-IF-A4AJ-01 7 40134028 40134028 G A CDK13 Missense_Mutation p.V1330M 0.17 tolerated_low_confidence(0.06) benign(0.089) TCGA-IF-A4AJ-01 7 99569380 99569380 T C AZGP1 Missense_Mutation p.N109S 0.35 deleterious(0.02) possibly_damaging(0.861) TCGA-IF-A4AJ-01 8 3266956 3266956 G T CSMD1 Missense_Mutation p.P578H 0.24 probably_damaging(0.993) TCGA-IF-A4AJ-01 9 106888987 106888987 G A SMC2 Silent p.Q839Q 0.31 TCGA-IF-A4AJ-01 9 124547697 124547697 T G DAB2IP 3'UTR 0.62 TCGA-IF-A4AJ-01 9 75309519 75309519 G C TMC1 Missense_Mutation p.R42T 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.587) TCGA-IF-A4AJ-01 9 84202628 84202628 G A TLE1 Missense_Mutation p.R649W 0.40 deleterious(0) probably_damaging(1) TCGA-IF-A4AJ-01 X 103498855 103498855 T C ESX1 Silent p.Q162Q 0.37 TCGA-IF-A4AJ-01 X 153577388 153577388 C T FLNA Silent p.L2591L 0.09 TCGA-IF-A4AJ-01 X 153588251 153588251 A T FLNA Silent p.T1276T 0.30 TCGA-IF-A4AK-01 10 115923008 115923008 A G C10orf118 Missense_Mutation p.I7T 0.53 tolerated_low_confidence(0.46) benign(0.002) TCGA-IF-A4AK-01 10 96740982 96740982 G A CYP2C9 Missense_Mutation p.R335Q 0.35 tolerated(0.08) possibly_damaging(0.691) TCGA-IF-A4AK-01 11 118305414 118305414 A G RP11-770J1.4 Missense_Mutation p.L136P 0.10 unknown(0) TCGA-IF-A4AK-01 11 118472134 118472137 GTTT - ARCN1 3'UTR 0.55 TCGA-IF-A4AK-01 11 57575904 57575904 C G CTNND1 Missense_Mutation p.L712V 0.27 deleterious(0) probably_damaging(0.994) TCGA-IF-A4AK-01 12 132237743 132237743 G T SFSWAP Missense_Mutation p.G386V 0.40 deleterious(0.01) probably_damaging(1) TCGA-IF-A4AK-01 12 26839531 26839531 C T ITPR2 Missense_Mutation p.R344H 0.43 tolerated(0.07) possibly_damaging(0.667) TCGA-IF-A4AK-01 14 24572735 24572735 C T PCK2 Silent p.H495H 0.11 TCGA-IF-A4AK-01 16 1962101 1962101 G T HS3ST6 Missense_Mutation p.D142E 0.43 tolerated(0.1) benign(0.004) TCGA-IF-A4AK-01 17 27870183 27870183 C T TAOK1 3'UTR 0.10 TCGA-IF-A4AK-01 19 12691117 12691117 G A ZNF490 3'UTR 0.50 TCGA-IF-A4AK-01 19 3478472 3478472 C T C19orf77 Missense_Mutation p.E62K 0.19 tolerated(0.11) benign(0.152) TCGA-IF-A4AK-01 19 46027364 46027364 G A VASP Missense_Mutation p.R307Q 0.35 deleterious(0.04) possibly_damaging(0.701) TCGA-IF-A4AK-01 19 5219990 5219990 T C PTPRS Missense_Mutation p.Y1242C 0.14 deleterious(0) probably_damaging(0.999) TCGA-IF-A4AK-01 1 108293737 108293737 A G VAV3 Splice_Site p.X420_splice 0.55 TCGA-IF-A4AK-01 1 156347271 156347271 G A RHBG Missense_Mutation p.V123M 0.35 tolerated(0.16) benign(0.031) TCGA-IF-A4AK-01 1 17555167 17555167 C A PADI1 Missense_Mutation p.L234M 0.79 tolerated(0.15) possibly_damaging(0.748) TCGA-IF-A4AK-01 1 201981253 201981253 G A ELF3 Missense_Mutation p.R111H 0.40 deleterious(0.04) probably_damaging(0.976) TCGA-IF-A4AK-01 1 24776053 24776053 C T NIPAL3 Silent p.H159H 0.81 TCGA-IF-A4AK-01 1 248512774 248512774 C A OR14C36 Missense_Mutation p.T233K 0.29 tolerated(1) benign(0.006) TCGA-IF-A4AK-01 1 33585656 33585656 G A ADC Missense_Mutation p.R419Q 0.47 tolerated(1) benign(0.001) TCGA-IF-A4AK-01 2 181848774 181848774 C G UBE2E3 Missense_Mutation p.Q67E 0.06 deleterious(0.02) benign(0.041) TCGA-IF-A4AK-01 2 242007218 242007218 C T SNED1 Missense_Mutation p.T1017M 0.40 deleterious(0.02) probably_damaging(0.989) TCGA-IF-A4AK-01 2 80136835 80136835 C T CTNNA2 Missense_Mutation p.T323M 0.50 deleterious(0) probably_damaging(0.995) TCGA-IF-A4AK-01 3 142739527 142739527 G A U2SURP Missense_Mutation p.R242H 0.48 tolerated(0.58) benign(0.002) TCGA-IF-A4AK-01 3 3111776 3111776 G C IL5RA 3'UTR 0.45 TCGA-IF-A4AK-01 3 41938472 41938472 C - ULK4 Frame_Shift_Del p.D458Ifs*29 0.44 TCGA-IF-A4AK-01 4 22749134 22749134 G A GBA3 Missense_Mutation p.V168I 0.30 tolerated(0.43) benign(0.002) TCGA-IF-A4AK-01 4 96761780 96761780 G T PDHA2 Missense_Mutation p.G160V 0.27 deleterious(0) probably_damaging(0.998) TCGA-IF-A4AK-01 5 140553042 140553042 G A PCDHB7 Missense_Mutation p.S209N 0.08 tolerated_low_confidence(0.07) benign(0.003) TCGA-IF-A4AK-01 6 32118219 32118219 C T PRRT1 Missense_Mutation p.G162S 0.50 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-IF-A4AK-01 6 47762984 47762984 G T OPN5 Missense_Mutation p.K147N 0.50 tolerated(0.26) benign(0.006) TCGA-IF-A4AK-01 6 54245359 54245359 A G TINAG Missense_Mutation p.E429G 0.35 tolerated(0.29) probably_damaging(0.99) TCGA-IF-A4AK-01 6 55263988 55263988 C A GFRAL Silent p.T321T 0.09 TCGA-IF-A4AK-01 6 90468585 90468585 A - MDN1 Frame_Shift_Del p.L852Cfs*32 0.29 TCGA-IF-A4AK-01 8 26627735 26627735 G C ADRA1A Intron 0.09 TCGA-IF-A4AK-01 X 2852729 2852729 C A ARSE 3'Flank 0.22 TCGA-IS-A3K6-01 10 126185567 126185567 G A LHPP Missense_Mutation p.V169I 0.77 tolerated(0.07) benign(0.036) TCGA-IS-A3K6-01 10 17199707 17199707 T A TRDMT1 Missense_Mutation p.E207V 0.34 tolerated(0.22) benign(0.003) TCGA-IS-A3K6-01 10 49452869 49452869 C T FRMPD2 Missense_Mutation p.M111I 0.38 deleterious(0) benign(0.162) TCGA-IS-A3K6-01 11 17515733 17515733 G T USH1C 3'Flank 0.28 TCGA-IS-A3K6-01 11 5221043 5221043 C T OR51V1 Missense_Mutation p.M296I 0.45 deleterious(0.03) benign(0.075) TCGA-IS-A3K6-01 11 6007208 6007208 C T OR52L1 Missense_Mutation p.R318H 0.31 deleterious(0.01) benign(0.04) TCGA-IS-A3K6-01 11 62327654 62327654 G A EEF1G Nonsense_Mutation p.R348* 0.11 TCGA-IS-A3K6-01 11 7110543 7110543 C T RBMXL2 Silent p.A64A 0.35 TCGA-IS-A3K6-01 11 71276808 71276808 T C KRTAP5-10 Missense_Mutation p.C59R 0.40 unknown(0) TCGA-IS-A3K6-01 12 122257636 122257636 A G SETD1B Missense_Mutation p.M1206V 0.25 unknown(0) TCGA-IS-A3K6-01 12 49088156 49088156 G A CCNT1 Nonsense_Mutation p.Q281* 0.25 TCGA-IS-A3K6-01 12 56743168 56743168 C T STAT2 Intron 0.10 TCGA-IS-A3K6-01 12 56743279 56743279 C T STAT2 Silent p.V424V 0.10 TCGA-IS-A3K6-01 12 57327965 57327965 G A SDR9C7 Silent p.Y27Y 0.38 TCGA-IS-A3K6-01 13 44443482 44443482 C G CCDC122 Missense_Mutation p.G11R 0.30 tolerated_low_confidence(0.56) benign(0.01) TCGA-IS-A3K6-01 15 49048344 49048344 C T CEP152 Missense_Mutation p.R1034Q 0.33 tolerated(0.06) benign(0.441) TCGA-IS-A3K6-01 15 49926974 49926974 C G DTWD1 Missense_Mutation p.T217S 0.29 tolerated(0.29) benign(0.032) TCGA-IS-A3K6-01 15 74315216 74315216 T A PML Missense_Mutation p.L217H 0.30 deleterious(0) probably_damaging(0.986) TCGA-IS-A3K6-01 16 11876268 11876268 G A ZC3H7A 5'UTR 0.35 TCGA-IS-A3K6-01 16 20944659 20944659 G A DNAH3 Silent p.S4056S 0.41 TCGA-IS-A3K6-01 17 1641031 1641031 G A WDR81 3'UTR 0.73 TCGA-IS-A3K6-01 17 40936573 40936573 G A WNK4 Silent p.A382A 0.24 TCGA-IS-A3K6-01 17 47022107 47022107 G A SNF8 5'UTR 0.22 TCGA-IS-A3K6-01 17 7577130 7577130 A C TP53 Missense_Mutation p.F270V 0.63 deleterious(0) probably_damaging(0.995) TCGA-IS-A3K6-01 19 41120291 41120291 C T LTBP4 Silent p.S984S 0.49 TCGA-IS-A3K6-01 19 52888544 52888544 A G ZNF880 Missense_Mutation p.T571A 0.50 tolerated(0.07) benign(0.052) TCGA-IS-A3K6-01 1 156307996 156307996 G C CCT3 5'UTR 0.45 TCGA-IS-A3K6-01 1 157667713 157667713 C - FCRL3 Intron 0.30 TCGA-IS-A3K6-01 1 204587896 204587896 G A LRRN2 Missense_Mutation p.R409C 0.56 deleterious(0) probably_damaging(0.98) TCGA-IS-A3K6-01 1 217822309 217822309 A G SPATA17 Missense_Mutation p.I52V 0.29 deleterious(0.01) possibly_damaging(0.644) TCGA-IS-A3K6-01 20 3802829 3802829 G A AP5S1 Missense_Mutation p.R22Q 0.44 deleterious(0) probably_damaging(0.996) TCGA-IS-A3K6-01 20 62872076 62872076 C G MYT1 3'UTR 0.46 TCGA-IS-A3K6-01 21 44836772 44836772 A T SIK1 Silent p.I734I 0.33 TCGA-IS-A3K6-01 2 135744087 135744087 G - MAP3K19 Frame_Shift_Del p.M786* 0.31 TCGA-IS-A3K6-01 2 70387846 70387846 A T C2orf42 Missense_Mutation p.V476E 0.49 tolerated(0.2) benign(0.068) TCGA-IS-A3K6-01 3 141535883 141535883 G A GRK7 Silent p.L551L 0.44 TCGA-IS-A3K6-01 4 158284904 158284904 T A GRIA2 3'UTR 0.35 TCGA-IS-A3K6-01 5 13882857 13882857 A T DNAH5 Missense_Mutation p.M1081K 0.11 benign(0) TCGA-IS-A3K6-01 6 26240683 26240683 T - HIST1H4F Frame_Shift_Del p.L11* 0.56 TCGA-IS-A3K6-01 6 27368736 27368736 G A ZNF391 Missense_Mutation p.S196N 0.50 tolerated(1) benign(0.059) TCGA-IS-A3K6-01 6 32782136 32782136 C A HLA-DOB Missense_Mutation p.D202Y 0.38 deleterious(0) probably_damaging(0.968) TCGA-IS-A3K6-01 6 38120497 38120497 C T ZFAND3 3'UTR 0.52 TCGA-IS-A3K6-01 8 61763141 61763141 G T CHD7 Nonsense_Mutation p.E1832* 0.33 TCGA-IS-A3K6-01 8 68115436 68115436 C T ARFGEF1 Missense_Mutation p.M1670I 0.27 deleterious(0.03) probably_damaging(0.993) TCGA-IS-A3K6-01 9 16738393 16738393 C T BNC2 Missense_Mutation p.V32I 0.38 deleterious_low_confidence(0) unknown(0) TCGA-IS-A3K6-01 9 17235703 17235703 A T CNTLN Missense_Mutation p.K194N 0.38 deleterious(0) probably_damaging(0.922) TCGA-IS-A3K6-01 9 71866189 71866189 C T TJP2 Missense_Mutation p.S1108L 0.33 deleterious(0) probably_damaging(0.976) TCGA-IS-A3K6-01 X 148037568 148037568 G T AFF2 Missense_Mutation p.D665Y 0.43 deleterious(0) possibly_damaging(0.812) TCGA-IS-A3K6-01 X 55047609 55047609 C A ALAS2 Missense_Mutation p.A172S 0.46 deleterious(0) probably_damaging(0.993) TCGA-IS-A3K6-01 X 62974570 62974570 G A ARHGEF9 5'UTR 0.29 TCGA-IS-A3K7-01 10 115661629 115661629 C T NHLRC2 Silent p.H448H 0.19 TCGA-IS-A3K7-01 10 123549778 123549778 C A ATE1 Silent p.L428L 0.13 TCGA-IS-A3K7-01 10 129910594 129910594 G C MKI67 Missense_Mutation p.A591G 0.50 deleterious(0.03) possibly_damaging(0.76) TCGA-IS-A3K7-01 10 134885552 134885552 T C GPR123 Missense_Mutation p.V104A 0.09 deleterious_low_confidence(0) benign(0.294) TCGA-IS-A3K7-01 10 18965225 18965225 G C ARL5B 3'UTR 0.35 TCGA-IS-A3K7-01 10 88704031 88704031 G A MMRN2 Nonsense_Mutation p.Q215* 0.12 TCGA-IS-A3K7-01 11 118513087 118513087 C T PHLDB1 Missense_Mutation p.P951L 0.34 tolerated(0.07) benign(0.002) TCGA-IS-A3K7-01 11 4842933 4842933 C T OR51F2 Silent p.I106I 0.08 TCGA-IS-A3K7-01 11 48510756 48510756 G A OR4A47 Missense_Mutation p.V138M 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.517) TCGA-IS-A3K7-01 11 55321796 55321796 C A OR4C15 Missense_Mutation p.T5K 0.39 deleterious_low_confidence(0) unknown(0) TCGA-IS-A3K7-01 11 61504767 61504767 T G DAGLA Missense_Mutation p.F495L 0.32 deleterious(0) benign(0.171) TCGA-IS-A3K7-01 11 62339327 62339327 T C EEF1G Missense_Mutation p.N73S 0.40 deleterious(0.03) benign(0.314) TCGA-IS-A3K7-01 11 65000676 65000676 C G SLC22A20 RNA 0.32 TCGA-IS-A3K7-01 11 7110612 7110612 G A RBMXL2 Silent p.P87P 0.29 TCGA-IS-A3K7-01 11 78383117 78383117 G A TENM4 Silent p.F1918F 0.28 TCGA-IS-A3K7-01 11 8009039 8009039 C A EIF3F Nonsense_Mutation p.S47* 0.07 TCGA-IS-A3K7-01 11 8704275 8704275 C A RPL27A 5'UTR 0.28 TCGA-IS-A3K7-01 12 106461409 106461409 G T NUAK1 Missense_Mutation p.P386H 0.26 deleterious(0.01) possibly_damaging(0.619) TCGA-IS-A3K7-01 12 107156387 107156387 G A RFX4 3'Flank 0.49 TCGA-IS-A3K7-01 12 133779947 133779947 C A ZNF268 Missense_Mutation p.H559N 0.50 tolerated(0.54) benign(0.186) TCGA-IS-A3K7-01 12 14929817 14929817 G C H2AFJ 3'UTR 0.08 TCGA-IS-A3K7-01 12 14929892 14929892 G C H2AFJ 3'UTR 0.15 TCGA-IS-A3K7-01 12 4737038 4737038 C T AKAP3 Missense_Mutation p.V344I 0.60 tolerated(0.77) probably_damaging(0.999) TCGA-IS-A3K7-01 12 49446096 49446096 G A KMT2D Missense_Mutation p.P457L 0.23 unknown(0) TCGA-IS-A3K7-01 12 6647317 6647317 A C GAPDH Missense_Mutation p.H330P 0.21 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IS-A3K7-01 13 32913902 32913902 G A BRCA2 Missense_Mutation p.V1804I 0.53 tolerated(0.52) benign(0.03) TCGA-IS-A3K7-01 13 39263070 39263070 A G FREM2 Missense_Mutation p.D530G 0.24 deleterious(0) probably_damaging(1) TCGA-IS-A3K7-01 14 24632708 24632708 C A IRF9 Silent p.S162S 0.16 TCGA-IS-A3K7-01 14 64990324 64990324 T G ZBTB1 Missense_Mutation p.M701R 0.67 tolerated(0.12) benign(0.002) TCGA-IS-A3K7-01 15 100889473 100889473 C G SPATA41 RNA 0.17 TCGA-IS-A3K7-01 15 20644374 20644374 A T HERC2P3 Intron 0.25 TCGA-IS-A3K7-01 15 25327936 25327936 C A SNORD116-16 RNA 0.06 TCGA-IS-A3K7-01 15 38641682 38641682 G T SPRED1 Silent p.R214R 0.38 TCGA-IS-A3K7-01 15 38641683 38641683 C T SPRED1 Nonsense_Mutation p.Q215* 0.38 TCGA-IS-A3K7-01 15 54630676 54630676 C G UNC13C Missense_Mutation p.L1568V 0.84 tolerated_low_confidence(0.3) probably_damaging(0.999) TCGA-IS-A3K7-01 15 57896543 57896543 G A MYZAP Missense_Mutation p.R51K 0.19 tolerated(0.14) benign(0.101) TCGA-IS-A3K7-01 15 57924644 57924644 C A GCOM1 Missense_Mutation p.Q231K 0.55 deleterious(0.03) possibly_damaging(0.759) TCGA-IS-A3K7-01 16 53634750 53634750 G A RPGRIP1L 3'UTR 0.59 TCGA-IS-A3K7-01 16 88502797 88502797 G A ZNF469 Silent p.K2945K 0.12 TCGA-IS-A3K7-01 16 88724338 88724338 C T MVD Missense_Mutation p.A81T 0.07 tolerated(1) benign(0.004) TCGA-IS-A3K7-01 16 88747687 88747687 C T SNAI3 Missense_Mutation p.R171Q 0.34 tolerated(0.59) possibly_damaging(0.553) TCGA-IS-A3K7-01 16 89702330 89702330 C T DPEP1 Missense_Mutation p.P40L 0.33 deleterious(0) probably_damaging(0.993) TCGA-IS-A3K7-01 17 27050923 27050923 G C RPL23A 3'UTR 0.31 TCGA-IS-A3K7-01 17 28887657 28887657 G A TBC1D29 Missense_Mutation p.C34Y 0.13 deleterious(0) benign(0.015) TCGA-IS-A3K7-01 17 38173471 38173471 G A CSF3 3'UTR 0.20 TCGA-IS-A3K7-01 17 39334352 39334352 C T KRTAP4-2 Missense_Mutation p.R22H 0.36 tolerated(0.12) unknown(0) TCGA-IS-A3K7-01 17 4389838 4389838 C T SPNS3 Silent p.Y470Y 0.56 TCGA-IS-A3K7-01 17 4692361 4692361 C T GLTPD2 Missense_Mutation p.P19S 0.21 deleterious_low_confidence(0.01) benign(0.024) TCGA-IS-A3K7-01 17 48557094 48557094 G C RSAD1 Missense_Mutation p.Q80H 0.05 deleterious(0.03) benign(0.021) TCGA-IS-A3K7-01 17 51901999 51901999 A T KIF2B Missense_Mutation p.R535S 0.31 deleterious(0) probably_damaging(0.995) TCGA-IS-A3K7-01 17 66877272 66877272 T C ABCA8 Missense_Mutation p.T1303A 0.28 deleterious(0.02) possibly_damaging(0.868) TCGA-IS-A3K7-01 17 71429882 71429882 G A SDK2 Missense_Mutation p.T434I 0.06 tolerated(0.08) possibly_damaging(0.783) TCGA-IS-A3K7-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.46 TCGA-IS-A3K7-01 17 79771669 79771669 C A GCGR 3'UTR 0.67 TCGA-IS-A3K7-01 17 79771670 79771670 A G GCGR 3'UTR 0.67 TCGA-IS-A3K7-01 17 80540673 80540673 C T FOXK2 Silent p.S322S 0.28 TCGA-IS-A3K7-01 18 50929208 50929208 T G DCC Silent p.P960P 0.48 TCGA-IS-A3K7-01 18 7232042 7232042 A T LRRC30 Nonstop_Mutation p.*302Cext*? 0.69 TCGA-IS-A3K7-01 19 13265425 13265425 G T IER2 3'UTR 0.28 TCGA-IS-A3K7-01 19 1584657 1584657 G A MBD3 Missense_Mutation p.T97M 0.50 tolerated(0.19) probably_damaging(0.947) TCGA-IS-A3K7-01 19 19626029 19626029 G A TSSK6 Missense_Mutation p.P70S 0.30 tolerated(0.08) probably_damaging(0.958) TCGA-IS-A3K7-01 19 39799115 39799115 A C LRFN1 Missense_Mutation p.C492G 0.25 deleterious(0) probably_damaging(1) TCGA-IS-A3K7-01 19 44680347 44680347 A T ZNF226 Missense_Mutation p.E311V 0.33 tolerated(0.1) benign(0.009) TCGA-IS-A3K7-01 19 50569594 50569594 G T CTD-2126E3.1 RNA 0.24 TCGA-IS-A3K7-01 19 53645440 53645440 A C ZNF347 Missense_Mutation p.F215C 0.27 deleterious(0.01) benign(0.432) TCGA-IS-A3K7-01 19 7687645 7687645 C T XAB2 Intron 0.15 TCGA-IS-A3K7-01 19 9085355 9085355 A T MUC16 Missense_Mutation p.S2154T 0.37 unknown(0) TCGA-IS-A3K7-01 1 11579882 11579882 G A PTCHD2 Silent p.E715E 0.35 TCGA-IS-A3K7-01 1 118483749 118483749 A C WDR3 Silent p.R264R 0.29 TCGA-IS-A3K7-01 1 156347212 156347212 G T RHBG Missense_Mutation p.W103L 0.33 deleterious(0) probably_damaging(0.999) TCGA-IS-A3K7-01 1 160793458 160793458 C A LY9 Missense_Mutation p.Q568K 0.32 deleterious(0.05) benign(0.021) TCGA-IS-A3K7-01 1 171519345 171519345 A G PRRC2C Missense_Mutation p.E1696G 0.31 unknown(0) TCGA-IS-A3K7-01 1 181686247 181686247 C A CACNA1E Missense_Mutation p.A445D 0.38 deleterious(0) benign(0.246) TCGA-IS-A3K7-01 1 205811878 205811878 A G PM20D1 Silent p.L277L 0.31 TCGA-IS-A3K7-01 1 226595747 226595747 G A PARP1 5'UTR 0.50 TCGA-IS-A3K7-01 1 33069240 33069240 G T ZBTB8A 3'UTR 0.17 TCGA-IS-A3K7-01 1 33956909 33956909 C G ZSCAN20 Missense_Mutation p.H351D 0.50 deleterious(0.05) probably_damaging(1) TCGA-IS-A3K7-01 20 30421644 30421644 G A MYLK2 3'UTR 0.37 TCGA-IS-A3K7-01 20 3146263 3146263 C T LZTS3 Silent p.K401K 0.45 TCGA-IS-A3K7-01 20 50255956 50255956 G A ATP9A Nonsense_Mutation p.Q532* 0.41 TCGA-IS-A3K7-01 20 57829403 57829403 C T ZNF831 Missense_Mutation p.P1547S 0.21 tolerated(0.13) benign(0.086) TCGA-IS-A3K7-01 22 19050736 19050736 G A DGCR2 Missense_Mutation p.R202C 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-IS-A3K7-01 22 44392314 44392314 C A SAMM50 3'UTR 0.18 TCGA-IS-A3K7-01 2 132250386 132250386 T C MZT2A 5'Flank 0.30 TCGA-IS-A3K7-01 2 162735640 162735640 G A SLC4A10 Splice_Site p.X317_splice 0.31 TCGA-IS-A3K7-01 2 174131048 174131048 G A MLTK Missense_Mutation p.G658D 0.19 tolerated_low_confidence(0.06) benign(0.005) TCGA-IS-A3K7-01 2 202358884 202358884 T C ALS2CR11 Missense_Mutation p.E727G 0.28 tolerated(0.16) benign(0) TCGA-IS-A3K7-01 2 219679100 219679100 C T CYP27A1 Intron 0.11 TCGA-IS-A3K7-01 2 220072633 220072633 G A ZFAND2B Missense_Mutation p.A103T 0.12 tolerated(0.37) benign(0.083) TCGA-IS-A3K7-01 2 224831683 224831683 A G MRPL44 Missense_Mutation p.R311G 0.58 deleterious(0.01) probably_damaging(0.979) TCGA-IS-A3K7-01 2 241420382 241420382 C T ANKMY1 Silent p.K917K 0.24 TCGA-IS-A3K7-01 2 241420409 241420409 C G ANKMY1 Missense_Mutation p.K908N 0.24 deleterious(0) probably_damaging(0.99) TCGA-IS-A3K7-01 2 241420515 241420515 C T ANKMY1 Splice_Site p.X873_splice 0.24 TCGA-IS-A3K7-01 2 26698230 26698230 G A OTOF Silent p.S1041S 0.39 TCGA-IS-A3K7-01 2 26698260 26698260 G A OTOF Silent p.I1031I 0.32 TCGA-IS-A3K7-01 2 29519861 29519861 C G ALK Missense_Mutation p.E570D 0.48 tolerated(0.07) probably_damaging(0.997) TCGA-IS-A3K7-01 2 38536561 38536561 C G ATL2 Missense_Mutation p.G344A 0.31 deleterious(0) probably_damaging(0.989) TCGA-IS-A3K7-01 2 64863377 64863377 C T SERTAD2 Missense_Mutation p.G210D 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-IS-A3K7-01 3 105421207 105421207 G A CBLB Missense_Mutation p.P564S 0.38 tolerated_low_confidence(0.21) benign(0.047) TCGA-IS-A3K7-01 3 122437331 122437331 T C PARP14 Missense_Mutation p.W1445R 0.40 deleterious(0) probably_damaging(0.968) TCGA-IS-A3K7-01 3 138738695 138738695 G C PRR23B 3'UTR 0.40 TCGA-IS-A3K7-01 3 183818417 183818417 C T HTR3E Missense_Mutation p.A86V 0.12 deleterious(0.03) benign(0.01) TCGA-IS-A3K7-01 3 193372786 193372786 T A OPA1 Silent p.T698T 0.28 TCGA-IS-A3K7-01 3 48369805 48369805 G T SPINK8 Silent p.I9I 0.63 TCGA-IS-A3K7-01 3 8543596 8543596 C A LMCD1 5'UTR 0.17 TCGA-IS-A3K7-01 4 129792902 129792902 G A JADE1 Missense_Mutation p.D672N 0.25 tolerated(0.24) benign(0.048) TCGA-IS-A3K7-01 4 134073855 134073855 G A PCDH10 Missense_Mutation p.G854R 0.22 tolerated(0.16) benign(0.332) TCGA-IS-A3K7-01 4 38775208 38775208 A T TLR10 Nonsense_Mutation p.Y668* 0.05 TCGA-IS-A3K7-01 4 71555634 71555634 C T UTP3 Nonsense_Mutation p.Q414* 0.44 TCGA-IS-A3K7-01 4 88989189 88989189 G A PKD2 Missense_Mutation p.G833D 0.06 deleterious(0.03) probably_damaging(1) TCGA-IS-A3K7-01 5 140793419 140793419 G T PCDHGA10 Missense_Mutation p.R226L 0.28 tolerated_low_confidence(0.19) benign(0.231) TCGA-IS-A3K7-01 5 149500489 149500489 C A PDGFRB Missense_Mutation p.D850Y 0.15 deleterious(0) probably_damaging(0.996) TCGA-IS-A3K7-01 5 149582250 149582250 C G SLC6A7 Missense_Mutation p.D357E 0.32 tolerated(0.82) benign(0.092) TCGA-IS-A3K7-01 5 176048272 176048272 T C SNCB Silent p.E105E 0.14 TCGA-IS-A3K7-01 5 36039667 36039667 C T UGT3A2 Nonsense_Mutation p.W329* 0.15 TCGA-IS-A3K7-01 5 38530658 38530658 G C LIFR Nonsense_Mutation p.S31* 0.37 TCGA-IS-A3K7-01 6 109687821 109687821 G A CD164 3'UTR 0.44 TCGA-IS-A3K7-01 6 151671939 151671939 G A AKAP12 Missense_Mutation p.V805I 0.21 deleterious(0) probably_damaging(0.998) TCGA-IS-A3K7-01 6 16327927 16327927 C A ATXN1 Missense_Mutation p.Q205H 0.21 tolerated_low_confidence(0.59) unknown(0) TCGA-IS-A3K7-01 6 20481454 20481455 - A E2F3 Frame_Shift_Ins p.T177Nfs*4 0.37 TCGA-IS-A3K7-01 6 27222852 27222852 G A PRSS16 Missense_Mutation p.C473Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-IS-A3K7-01 6 30916955 30916955 G C DPCR1 Missense_Mutation p.K238N 0.21 deleterious(0.02) possibly_damaging(0.787) TCGA-IS-A3K7-01 6 31130282 31130282 C T TCF19 Missense_Mutation p.P276S 0.19 deleterious(0.02) possibly_damaging(0.857) TCGA-IS-A3K7-01 6 33380027 33380027 C T PHF1 Intron 0.19 TCGA-IS-A3K7-01 6 39053689 39053689 T A GLP1R Missense_Mutation p.L411Q 0.31 deleterious(0.03) benign(0.126) TCGA-IS-A3K7-01 6 46189925 46189925 G T RCAN2 3'UTR 0.27 TCGA-IS-A3K7-01 6 80198915 80198915 G A LCA5 Nonsense_Mutation p.Q373* 0.44 TCGA-IS-A3K7-01 6 83933629 83933629 G A ME1 Silent p.G433G 0.15 TCGA-IS-A3K7-01 6 88768470 88768470 G A SPACA1 Missense_Mutation p.R135K 0.15 tolerated(0.84) benign(0.011) TCGA-IS-A3K7-01 6 88769229 88769229 C T SPACA1 Missense_Mutation p.P178L 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-IS-A3K7-01 7 142630596 142630596 G A TRPV5 5'UTR 0.19 TCGA-IS-A3K7-01 7 148801743 148801743 A T ZNF425 Missense_Mutation p.V407D 0.14 deleterious(0.02) probably_damaging(0.972) TCGA-IS-A3K7-01 7 150696416 150696416 G A NOS3 Silent p.R365R 0.41 TCGA-IS-A3K7-01 7 44613318 44613318 C T DDX56 Missense_Mutation p.R29Q 0.26 tolerated(0.6) benign(0.004) TCGA-IS-A3K7-01 7 51141048 51141048 C G COBL Intron 0.25 TCGA-IS-A3K7-01 7 56169452 56169452 C A CHCHD2 3'UTR 0.38 TCGA-IS-A3K7-01 7 62752551 62752551 G A ZNF733P RNA 0.15 TCGA-IS-A3K7-01 7 6370316 6370316 C T FAM220A Missense_Mutation p.R157H 0.44 tolerated(0.55) benign(0) TCGA-IS-A3K7-01 7 70246714 70246714 A C AUTS2 Silent p.A706A 0.30 TCGA-IS-A3K7-01 7 73245579 73245579 G C CLDN4 Silent p.L16L 0.17 TCGA-IS-A3K7-01 7 96637007 96637007 A G DLX6 Missense_Mutation p.K165R 0.48 deleterious(0) probably_damaging(0.996) TCGA-IS-A3K7-01 8 22079120 22079120 C T PHYHIP Missense_Mutation p.D247N 0.10 deleterious(0.03) possibly_damaging(0.654) TCGA-IS-A3K7-01 8 70488399 70488399 C T SULF1 Missense_Mutation p.P123S 0.41 tolerated(0.31) benign(0.038) TCGA-IS-A3K7-01 9 140137556 140137556 G A TUBB4B Missense_Mutation p.A296T 0.09 deleterious_low_confidence(0.02) benign(0.259) TCGA-IS-A3K7-01 9 140330683 140330683 A G ENTPD8 Missense_Mutation p.Y278H 0.36 deleterious(0) possibly_damaging(0.786) TCGA-IS-A3K7-01 9 33112840 33112840 G C B4GALT1 3'UTR 0.36 TCGA-IS-A3K7-01 9 82308573 82308575 GTT - TLE4 Intron 0.39 TCGA-IS-A3K7-01 9 87563475 87563475 C A NTRK2 Silent p.G621G 0.31 TCGA-IS-A3K7-01 9 95847009 95847009 G C SUSD3 Missense_Mutation p.A250P 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.512) TCGA-IS-A3K7-01 X 100515140 100515140 C G DRP2 Missense_Mutation p.P911A 0.29 deleterious(0.04) benign(0.248) TCGA-IS-A3K7-01 X 103495245 103495245 T C ESX1 Silent p.P295P 0.42 TCGA-IS-A3K7-01 X 125686795 125686795 T C DCAF12L1 5'UTR 0.25 TCGA-IS-A3K7-01 X 125955076 125955076 A T CXorf64 Missense_Mutation p.E152V 0.09 deleterious(0) probably_damaging(0.958) TCGA-IS-A3K7-01 X 26213702 26213702 G A MAGEB6 3'UTR 0.24 TCGA-IS-A3K7-01 X 40573854 40573854 C T MED14 Missense_Mutation p.A153T 0.23 tolerated(0.46) possibly_damaging(0.61) TCGA-IS-A3K7-01 X 45008645 45008645 G A CXorf36 3'UTR 0.42 TCGA-IS-A3K7-01 X 48688009 48688009 C G ERAS Missense_Mutation p.A159G 0.27 tolerated(0.26) benign(0.01) TCGA-IS-A3K7-01 X 48761005 48761005 G C SLC35A2 Intron 0.13 TCGA-IS-A3K7-01 X 51640322 51640322 T C MAGED1 Missense_Mutation p.Y537H 0.16 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-IS-A3K7-01 X 67943803 67943803 C T STARD8 Silent p.L1012L 0.35 TCGA-IS-A3K8-01 11 116728998 116728998 T - SIK3 Frame_Shift_Del p.E956Nfs*9 0.30 TCGA-IS-A3K8-01 11 74978736 74978736 C A ARRB1 Nonsense_Mutation p.E369* 0.38 TCGA-IS-A3K8-01 12 98849591 98849591 C T SLC9A7P1 RNA 0.31 TCGA-IS-A3K8-01 13 41767967 41767967 G A KBTBD7 Missense_Mutation p.R143C 0.48 deleterious(0.01) probably_damaging(0.969) TCGA-IS-A3K8-01 14 24701505 24701505 A C NEDD8 5'UTR 0.71 TCGA-IS-A3K8-01 15 59323560 59323560 G C RNF111 Missense_Mutation p.R180P 0.41 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-IS-A3K8-01 15 75562229 75562229 G T GOLGA6C Silent p.G619G 0.20 TCGA-IS-A3K8-01 15 75664371 75664371 C A SIN3A Silent p.V1257V 0.39 TCGA-IS-A3K8-01 17 8192256 8192256 T C SLC25A35 3'UTR 0.34 TCGA-IS-A3K8-01 19 45783712 45783712 A G MARK4 Missense_Mutation p.T363A 0.49 deleterious(0.04) benign(0.012) TCGA-IS-A3K8-01 1 150131221 150131222 - A PLEKHO1 Frame_Shift_Ins p.T247Nfs*46 0.28 TCGA-IS-A3K8-01 1 152816119 152816119 T C LCE6A Silent p.G41G 0.24 TCGA-IS-A3K8-01 2 44065827 44065827 G A ABCG5 5'UTR 0.17 TCGA-IS-A3K8-01 4 10560071 10560071 G T CLNK Missense_Mutation p.D135E 0.29 tolerated(0.39) benign(0.004) TCGA-IS-A3K8-01 4 69202837 69202837 T C YTHDC1 Missense_Mutation p.Y264C 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-IS-A3K8-01 5 174157648 174157648 A T MSX2 3'UTR 0.28 TCGA-IS-A3K8-01 9 136584131 136584131 C A SARDH Missense_Mutation p.V317F 0.36 deleterious(0) possibly_damaging(0.853) TCGA-IS-A3K8-01 X 153881585 153881585 C T CTAG2 Missense_Mutation p.A69T 0.33 deleterious_low_confidence(0.04) unknown(0) TCGA-IS-A3KA-01 10 75553404 75553404 G T ZSWIM8 Missense_Mutation p.R791L 0.52 tolerated(0.32) benign(0.229) TCGA-IS-A3KA-01 11 102575384 102575384 A G MMP27 Silent p.T75T 0.14 TCGA-IS-A3KA-01 11 30032000 30032000 T A KCNA4 3'UTR 0.10 TCGA-IS-A3KA-01 11 5255646 5255646 A C HBD Silent p.P6P 0.09 TCGA-IS-A3KA-01 11 64678645 64678645 G C ATG2A Missense_Mutation p.P444R 0.33 tolerated(0.34) possibly_damaging(0.861) TCGA-IS-A3KA-01 11 64884288 64884288 G T ZNHIT2 Missense_Mutation p.P280T 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-IS-A3KA-01 12 104156110 104156110 G C STAB2 Missense_Mutation p.G2473A 0.16 tolerated(0.21) probably_damaging(0.999) TCGA-IS-A3KA-01 12 22838983 22838983 G A ETNK1 3'UTR 0.14 TCGA-IS-A3KA-01 12 6729361 6729361 G A LPAR5 Missense_Mutation p.L352F 0.05 deleterious(0.01) benign(0.069) TCGA-IS-A3KA-01 12 7362836 7362836 C T PEX5 3'UTR 0.28 TCGA-IS-A3KA-01 13 48951157 48951157 A - RB1 Frame_Shift_Del p.I441Lfs*16 0.37 TCGA-IS-A3KA-01 13 98606393 98606393 T C IPO5 5'UTR 0.27 TCGA-IS-A3KA-01 14 104165290 104165290 G A XRCC3 Silent p.L296L 0.26 TCGA-IS-A3KA-01 14 106209248 106209248 G A IGHG1 Missense_Mutation p.P54L 0.21 deleterious(0) probably_damaging(0.984) TCGA-IS-A3KA-01 14 20007611 20007611 G A POTEM Silent p.D359D 0.15 TCGA-IS-A3KA-01 14 93182482 93182482 T A LGMN Missense_Mutation p.S135C 0.13 deleterious(0) probably_damaging(0.999) TCGA-IS-A3KA-01 15 22368626 22368626 A G OR4M2 Silent p.L17L 0.20 TCGA-IS-A3KA-01 15 34649175 34649175 C G NUTM1 Missense_Mutation p.P961R 0.16 tolerated(0.06) possibly_damaging(0.58) TCGA-IS-A3KA-01 15 40591138 40591138 C T PLCB2 Silent p.T237T 0.10 TCGA-IS-A3KA-01 15 73879883 73879883 C T NPTN Missense_Mutation p.A230T 0.15 deleterious(0.04) benign(0.031) TCGA-IS-A3KA-01 15 80430522 80430522 G A ZFAND6 3'UTR 0.13 TCGA-IS-A3KA-01 15 89398733 89398733 C T ACAN Missense_Mutation p.L973F 0.15 tolerated(0.08) possibly_damaging(0.889) TCGA-IS-A3KA-01 16 19800230 19800230 T A IQCK Missense_Mutation p.W226R 0.35 deleterious(0) probably_damaging(0.997) TCGA-IS-A3KA-01 17 54554883 54554883 G A ANKFN1 Missense_Mutation p.R606H 0.58 tolerated(0.4) possibly_damaging(0.899) TCGA-IS-A3KA-01 17 7574017 7574017 C A TP53 Missense_Mutation p.R337L 0.82 deleterious(0.01) probably_damaging(0.914) TCGA-IS-A3KA-01 17 8218893 8218893 G T ARHGEF15 Splice_Site p.X474_splice 0.19 TCGA-IS-A3KA-01 17 8783808 8783808 T C PIK3R5 3'UTR 0.18 TCGA-IS-A3KA-01 18 40503652 40503652 C T RIT2 Missense_Mutation p.R104H 0.47 deleterious(0.03) probably_damaging(0.95) TCGA-IS-A3KA-01 19 17886830 17886830 G A FCHO1 Missense_Mutation p.D348N 0.13 deleterious(0.01) probably_damaging(0.949) TCGA-IS-A3KA-01 19 42881586 42881586 C T MEGF8 3'UTR 0.09 TCGA-IS-A3KA-01 19 46275980 46275980 C G DMPK Missense_Mutation p.M431I 0.20 deleterious(0.05) benign(0.103) TCGA-IS-A3KA-01 19 50247562 50247562 C G TSKS Missense_Mutation p.Q429H 0.45 tolerated(0.06) possibly_damaging(0.739) TCGA-IS-A3KA-01 1 154521274 154521274 T G UBE2Q1 3'UTR 0.23 TCGA-IS-A3KA-01 1 156507018 156507018 G A IQGAP3 Missense_Mutation p.T1126I 0.23 deleterious(0) probably_damaging(0.997) TCGA-IS-A3KA-01 1 29630536 29630536 C T PTPRU Silent p.Y892Y 0.24 TCGA-IS-A3KA-01 1 33354493 33354493 G A HPCA 5'UTR 0.19 TCGA-IS-A3KA-01 1 47583592 47583592 A T CYP4Z1 Nonsense_Mutation p.K502* 0.35 TCGA-IS-A3KA-01 1 85113279 85113279 A G SSX2IP Missense_Mutation p.V561A 0.57 tolerated_low_confidence(0.29) benign(0.001) TCGA-IS-A3KA-01 20 3729966 3729966 G C HSPA12B Splice_Site p.X313_splice 0.26 TCGA-IS-A3KA-01 21 37617593 37617593 C G DOPEY2 Missense_Mutation p.D1105E 0.30 tolerated(0.32) benign(0.007) TCGA-IS-A3KA-01 22 21138335 21138335 A T SERPIND1 Missense_Mutation p.K322M 0.18 deleterious(0.05) probably_damaging(0.979) TCGA-IS-A3KA-01 22 24219372 24219372 C A SLC2A11 Intron 0.30 TCGA-IS-A3KA-01 22 24219500 24219500 C G SLC2A11 Intron 0.37 TCGA-IS-A3KA-01 22 42276779 42276779 A G SREBF2 Silent p.A607A 0.25 TCGA-IS-A3KA-01 2 105883847 105883847 C T TGFBRAP1 Missense_Mutation p.R859Q 0.20 tolerated_low_confidence(0.19) benign(0.383) TCGA-IS-A3KA-01 2 198570101 198570101 G A MARS2 5'UTR 0.67 TCGA-IS-A3KA-01 2 209215655 209215655 C A PIKFYVE Silent p.A1865A 0.14 TCGA-IS-A3KA-01 2 6988912 6988912 C T CMPK2 3'UTR 0.33 TCGA-IS-A3KA-01 3 100469130 100469130 A C ABI3BP 3'UTR 0.15 TCGA-IS-A3KA-01 3 112969691 112969691 T C BOC Intron 0.18 TCGA-IS-A3KA-01 3 46716064 46716064 A T ALS2CL Missense_Mutation p.D807E 0.57 tolerated(0.27) benign(0.045) TCGA-IS-A3KA-01 4 155160445 155160445 G A DCHS2 Missense_Mutation p.P2002S 0.21 tolerated(0.34) benign(0.39) TCGA-IS-A3KA-01 4 166915615 166915615 C A TLL1 Silent p.A148A 0.36 TCGA-IS-A3KA-01 4 74608318 74608318 T A IL8 3'UTR 0.27 TCGA-IS-A3KA-01 4 995781 995781 C A IDUA Missense_Mutation p.S268R 0.42 tolerated(0.07) probably_damaging(0.999) TCGA-IS-A3KA-01 5 135188461 135188461 G T SLC25A48 Silent p.V124V 0.22 TCGA-IS-A3KA-01 5 137522920 137522920 G A KIF20A Missense_Mutation p.G831S 0.12 tolerated(0.4) benign(0.206) TCGA-IS-A3KA-01 5 140724710 140724710 C T PCDHGA3 Silent p.D370D 0.26 TCGA-IS-A3KA-01 5 19838992 19838992 C A CDH18 Missense_Mutation p.R35I 0.09 tolerated(0.06) benign(0.064) TCGA-IS-A3KA-01 6 155596830 155596830 G C CLDN20 5'UTR 0.29 TCGA-IS-A3KA-01 6 37182996 37182996 C T TMEM217 Missense_Mutation p.R223K 0.93 deleterious_low_confidence(0) benign(0.001) TCGA-IS-A3KA-01 6 37186212 37186212 C G TMEM217 Missense_Mutation p.E199Q 0.90 tolerated_low_confidence(0.14) benign(0) TCGA-IS-A3KA-01 6 57015685 57015685 G C ZNF451 Intron 0.39 TCGA-IS-A3KA-01 6 57017071 57017071 G A ZNF451 Silent p.L935L 0.17 TCGA-IS-A3KA-01 6 57017129 57017129 G A ZNF451 Missense_Mutation p.D955N 0.16 deleterious(0) probably_damaging(0.998) TCGA-IS-A3KA-01 6 73076562 73076562 A T RIMS1 Intron 0.28 TCGA-IS-A3KA-01 6 76388670 76388670 A G SENP6 Intron 0.42 TCGA-IS-A3KA-01 7 155257330 155257330 T - EN2 3'UTR 0.12 TCGA-IS-A3KA-01 7 2748796 2748796 C T AMZ1 Missense_Mutation p.A230V 0.32 tolerated(0.09) benign(0.015) TCGA-IS-A3KA-01 7 30921893 30921893 G A FAM188B Missense_Mutation p.R690H 0.22 tolerated(0.18) possibly_damaging(0.575) TCGA-IS-A3KA-01 7 87329764 87329764 G A RUNDC3B Missense_Mutation p.S106N 0.21 tolerated(0.08) possibly_damaging(0.568) TCGA-IS-A3KA-01 7 88963651 88963651 A G ZNF804B Missense_Mutation p.H452R 0.08 tolerated(0.35) benign(0.037) TCGA-IS-A3KA-01 8 141900797 141900797 G T PTK2 Missense_Mutation p.P14T 0.19 tolerated_low_confidence(0.8) benign(0.002) TCGA-IS-A3KA-01 8 145661352 145661352 C T TONSL Missense_Mutation p.A822T 0.29 tolerated(0.26) benign(0.007) TCGA-IS-A3KA-01 8 26366390 26366390 G A PNMA2 5'UTR 0.28 TCGA-IS-A3KA-01 8 26366391 26366391 A T PNMA2 5'UTR 0.30 TCGA-IS-A3KA-01 9 107456942 107456942 C A OR13D1 Silent p.I80I 0.13 TCGA-IS-A3KA-01 9 109691436 109691436 C T ZNF462 Missense_Mutation p.P1748L 0.22 possibly_damaging(0.636) TCGA-IS-A3KA-01 9 116356457 116356457 C A RGS3 Intron 0.29 TCGA-IS-A3KA-01 9 121971060 121971060 C T BRINP1 Missense_Mutation p.R361H 0.32 tolerated(0.24) probably_damaging(0.964) TCGA-IS-A3KA-01 9 32552393 32552393 G A TOPORS Intron 0.36 TCGA-IS-A3KA-01 9 5919818 5919818 T A KIAA2026 Missense_Mutation p.T2060S 0.38 tolerated(0.09) probably_damaging(0.971) TCGA-IS-A3KA-01 9 5968024 5968024 T C KIAA2026 Missense_Mutation p.K736R 0.28 deleterious(0.02) probably_damaging(0.99) TCGA-IS-A3KA-01 X 118124513 118124513 C G LONRF3 Missense_Mutation p.L469V 0.48 deleterious(0.01) possibly_damaging(0.498) TCGA-IS-A3KA-01 X 155252069 155252069 C T WASH6P RNA 0.35 TCGA-IS-A3KA-01 X 155252089 155252089 C T WASH6P RNA 0.23 TCGA-IS-A3KA-01 X 17168914 17168914 G T REPS2 3'UTR 0.33 TCGA-IS-A3KA-01 X 18660178 18660178 G A RS1 Silent p.H207H 0.24 TCGA-IS-A3KA-01 X 47060958 47060958 C T UBA1 Nonsense_Mutation p.Q254* 0.23 TCGA-IS-A3KA-01 X 52673709 52673709 G A SSX7 3'UTR 0.32 TCGA-IS-A3KA-01 X 54264792 54264792 G T WNK3 Missense_Mutation p.Q1333K 0.13 tolerated(0.12) benign(0.222) TCGA-IS-A3KA-01 X 55033727 55033727 C A APEX2 Missense_Mutation p.H472Q 0.17 deleterious(0) probably_damaging(0.96) TCGA-IS-A3KA-01 X 57618341 57618341 G A ZXDB 5'UTR 0.28 TCGA-IW-A3M4-01 10 96534925 96534925 G T CYP2C19 Missense_Mutation p.E93D 0.48 tolerated(0.15) benign(0.015) TCGA-IW-A3M4-01 12 105561314 105561314 A T KIAA1033 3'UTR 0.50 TCGA-IW-A3M4-01 12 111085091 111085091 G A TCTN1 Missense_Mutation p.A529T 0.10 deleterious(0) probably_damaging(0.994) TCGA-IW-A3M4-01 12 52566026 52566026 G T KRT80 Silent p.I378I 0.38 TCGA-IW-A3M4-01 13 32802785 32802785 C A FRY Missense_Mutation p.T1800K 0.84 deleterious(0.01) probably_damaging(0.921) TCGA-IW-A3M4-01 14 92959954 92959954 G T SLC24A4 Missense_Mutation p.M617I 0.85 tolerated(0.08) benign(0.086) TCGA-IW-A3M4-01 17 44144914 44144914 C A KANSL1 Splice_Site p.X551_splice 0.21 TCGA-IW-A3M4-01 19 53770380 53770380 C T VN1R4 Missense_Mutation p.R180H 0.12 tolerated(0.29) benign(0) TCGA-IW-A3M4-01 19 9361756 9361756 A T OR7E24 Nonsense_Mutation p.K13* 0.46 TCGA-IW-A3M4-01 1 209955540 209955540 C T TRAF3IP3 3'UTR 0.53 TCGA-IW-A3M4-01 1 225534313 225534313 A G DNAH14 Missense_Mutation p.I2855M 0.48 tolerated(0.19) benign(0.002) TCGA-IW-A3M4-01 1 235950617 235950617 G T LYST Nonsense_Mutation p.S1582* 0.45 TCGA-IW-A3M4-01 20 40979337 40979337 G - PTPRT Frame_Shift_Del p.P599Hfs*2 0.32 TCGA-IW-A3M4-01 21 37709262 37709272 ATGGGAATGGT - MORC3 Frame_Shift_Del p.G69Dfs*3 0.48 TCGA-IW-A3M4-01 22 31740715 31740715 G T PATZ1 Missense_Mutation p.L292I 0.38 tolerated(0.19) probably_damaging(0.949) TCGA-IW-A3M4-01 2 102501701 102501701 A G MAP4K4 Silent p.E1046E 0.44 TCGA-IW-A3M4-01 2 68691360 68691360 T A FBXO48 Missense_Mutation p.E150V 0.07 deleterious(0) possibly_damaging(0.844) TCGA-IW-A3M4-01 2 95815475 95815475 C G ZNF514 Missense_Mutation p.R252T 0.52 deleterious(0) possibly_damaging(0.736) TCGA-IW-A3M4-01 3 179499580 179499580 C T USP13 Missense_Mutation p.H823Y 0.36 deleterious(0) probably_damaging(1) TCGA-IW-A3M4-01 4 74012985 74012985 C A ANKRD17 Nonsense_Mutation p.E578* 0.11 TCGA-IW-A3M4-01 5 147653942 147653942 C T SPINK13 Missense_Mutation p.P35S 0.46 deleterious(0.01) probably_damaging(0.909) TCGA-IW-A3M4-01 5 169685121 169685121 G A LCP2 Silent p.N340N 0.40 TCGA-IW-A3M4-01 6 50805765 50805765 G A TFAP2B Missense_Mutation p.R300H 0.07 deleterious(0) probably_damaging(0.999) TCGA-IW-A3M4-01 7 100687050 100687050 C A MUC17 Missense_Mutation p.T4118K 0.55 unknown(0) TCGA-IW-A3M4-01 7 151921699 151921699 G T KMT2C Silent p.I993I 0.38 TCGA-IW-A3M4-01 8 145111873 145111873 G A OPLAH Silent p.L562L 0.40 TCGA-IW-A3M4-01 9 79824413 79824413 A G VPS13A Missense_Mutation p.K154E 0.13 deleterious(0) benign(0.297) TCGA-IW-A3M4-01 X 107975899 107975899 G A IRS4 Missense_Mutation p.P1226S 0.51 deleterious_low_confidence(0.03) unknown(0) TCGA-IW-A3M4-01 X 119390301 119390301 T C ZBTB33 3'UTR 0.41 TCGA-IW-A3M4-01 X 15579864 15579864 G T ACE2 3'UTR 0.39 TCGA-IW-A3M4-01 X 57936921 57936921 G T ZXDA 5'UTR 0.67 TCGA-IW-A3M4-01 X 77385347 77385347 C A TAF9B 3'UTR 0.42 TCGA-IW-A3M5-01 10 48429409 48429409 G T GDF10 Silent p.G159G 1.00 TCGA-IW-A3M5-01 10 71654434 71654434 C T COL13A1 Missense_Mutation p.P203S 0.09 tolerated(0.27) probably_damaging(0.996) TCGA-IW-A3M5-01 10 76735646 76735646 C G KAT6B Silent p.P517P 0.67 TCGA-IW-A3M5-01 11 124135362 124135362 T G OR8G5 Missense_Mutation p.C214G 0.84 deleterious(0) probably_damaging(1) TCGA-IW-A3M5-01 11 77629981 77629981 A T INTS4 Missense_Mutation p.I603N 0.20 tolerated(0.53) benign(0.013) TCGA-IW-A3M5-01 12 113645821 113645821 T C IQCD Missense_Mutation p.R51G 0.19 deleterious(0) probably_damaging(0.999) TCGA-IW-A3M5-01 12 123286397 123286397 A - CCDC62 Frame_Shift_Del p.S569Vfs*3 0.11 TCGA-IW-A3M5-01 12 25380275 25380275 T A KRAS Missense_Mutation p.Q61H 0.62 deleterious(0) benign(0.371) TCGA-IW-A3M5-01 12 75444697 75444697 C T KCNC2 Missense_Mutation p.R363H 0.38 deleterious(0.01) probably_damaging(1) TCGA-IW-A3M5-01 13 36445375 36445375 G T DCLK1 Missense_Mutation p.A309D 0.33 tolerated(0.27) possibly_damaging(0.82) TCGA-IW-A3M5-01 14 24029180 24029180 G T AP1G2 Silent p.I741I 0.17 TCGA-IW-A3M5-01 14 62214339 62214339 A G HIF1A 3'UTR 0.44 TCGA-IW-A3M5-01 14 71199867 71199867 T C MAP3K9 Missense_Mutation p.K754R 0.38 tolerated(0.32) benign(0.088) TCGA-IW-A3M5-01 14 88946391 88946391 G A PTPN21 Silent p.L462L 0.42 TCGA-IW-A3M5-01 14 93483134 93483134 G A ITPK1 Missense_Mutation p.R45W 0.44 deleterious(0) possibly_damaging(0.668) TCGA-IW-A3M5-01 15 93482893 93482893 G C CHD2 Missense_Mutation p.D213H 0.75 deleterious(0.04) benign(0.192) TCGA-IW-A3M5-01 16 48234247 48234247 C T ABCC11 Silent p.E674E 0.12 TCGA-IW-A3M5-01 16 76509936 76509936 C G CNTNAP4 Missense_Mutation p.H513D 0.21 deleterious(0) possibly_damaging(0.772) TCGA-IW-A3M5-01 17 4447852 4447852 C A MYBBP1A Silent p.R857R 0.79 TCGA-IW-A3M5-01 17 56081219 56081219 G - SRSF1 3'Flank 0.49 TCGA-IW-A3M5-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.75 deleterious(0) probably_damaging(0.99) TCGA-IW-A3M5-01 18 9255635 9255635 G T ANKRD12 Missense_Mutation p.M790I 0.59 tolerated_low_confidence(0.57) benign(0) TCGA-IW-A3M5-01 19 15235791 15235791 G C ILVBL Missense_Mutation p.A27G 0.19 tolerated_low_confidence(0.19) benign(0.002) TCGA-IW-A3M5-01 19 16145448 16145448 G A LINC00905 RNA 0.12 TCGA-IW-A3M5-01 19 22939426 22939426 C T ZNF99 3'Flank 0.48 TCGA-IW-A3M5-01 19 37488408 37488408 A G ZNF568 Silent p.E541E 0.08 TCGA-IW-A3M5-01 19 46273040 46273042 AAT - DMPK 3'UTR 0.38 TCGA-IW-A3M5-01 19 49362197 49362197 G A PLEKHA4 Missense_Mutation p.R298C 0.43 deleterious(0.01) possibly_damaging(0.88) TCGA-IW-A3M5-01 19 52715971 52715971 C G PPP2R1A Missense_Mutation p.P179R 0.48 deleterious(0) probably_damaging(0.997) TCGA-IW-A3M5-01 19 7928630 7928630 G A EVI5L 3'Flank 0.25 TCGA-IW-A3M5-01 1 104115829 104115829 G T AMY2B Missense_Mutation p.G154C 0.25 deleterious(0.01) possibly_damaging(0.539) TCGA-IW-A3M5-01 1 183881229 183881229 T C RGL1 Missense_Mutation p.S561P 0.13 tolerated(0.09) benign(0.002) TCGA-IW-A3M5-01 1 53666452 53666452 T C CPT2 Silent p.L72L 0.66 TCGA-IW-A3M5-01 20 44577836 44577836 C G ZNF335 Missense_Mutation p.E1292Q 0.07 deleterious(0.04) possibly_damaging(0.808) TCGA-IW-A3M5-01 20 58515260 58515260 C A PPP1R3D 5'UTR 0.42 TCGA-IW-A3M5-01 20 60888027 60888027 C T LAMA5 Missense_Mutation p.V2999M 0.46 benign(0.027) TCGA-IW-A3M5-01 21 47635208 47635208 G A LSS Silent p.L299L 0.61 TCGA-IW-A3M5-01 2 103053767 103053767 G C IL18RAP Missense_Mutation p.Q225H 0.05 tolerated(0.44) possibly_damaging(0.852) TCGA-IW-A3M5-01 2 12882394 12882394 G T TRIB2 3'UTR 0.54 TCGA-IW-A3M5-01 2 175006589 175006601 AGCCACCTTTTCT - OLA1 Frame_Shift_Del p.E168* 0.15 TCGA-IW-A3M5-01 2 239040214 239040214 C T ESPNL Silent p.H953H 0.44 TCGA-IW-A3M5-01 2 33589422 33589422 C T LTBP1 Silent p.N1513N 0.35 TCGA-IW-A3M5-01 3 128532446 128532447 - CACA RAB7A 3'UTR 0.81 TCGA-IW-A3M5-01 3 172474804 172474804 C T ECT2 Missense_Mutation p.S112L 0.19 tolerated(0.07) benign(0.211) TCGA-IW-A3M5-01 3 172474880 172474880 C T ECT2 Silent p.V137V 0.25 TCGA-IW-A3M5-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.97 tolerated(0.11) possibly_damaging(0.529) TCGA-IW-A3M5-01 3 51667774 51667774 C T RAD54L2 Missense_Mutation p.P336L 0.85 deleterious(0) probably_damaging(1) TCGA-IW-A3M5-01 4 44626623 44626623 T A YIPF7 Silent p.S225S 0.81 TCGA-IW-A3M5-01 5 102440484 102440484 G A GIN1 Missense_Mutation p.L134F 0.10 deleterious(0.02) benign(0.243) TCGA-IW-A3M5-01 5 156810368 156810368 G A CYFIP2 Splice_Site p.X1043_splice 0.24 TCGA-IW-A3M5-01 5 167182036 167182036 C T TENM2 Intron 0.38 TCGA-IW-A3M5-01 5 94864706 94864706 T C TTC37 Silent p.Q331Q 0.63 TCGA-IW-A3M5-01 6 10629469 10629469 A T GCNT2 3'UTR 0.21 TCGA-IW-A3M5-01 6 146268768 146268768 T C SHPRH Missense_Mutation p.E358G 0.50 deleterious(0) possibly_damaging(0.788) TCGA-IW-A3M5-01 6 28227274 28227274 G A NKAPL Missense_Mutation p.R42H 0.54 tolerated(0.23) unknown(0) TCGA-IW-A3M5-01 6 39859447 39859447 T A DAAM2 Missense_Mutation p.F764I 0.05 deleterious(0) probably_damaging(0.999) TCGA-IW-A3M5-01 6 43006382 43006385 TGTC - CUL7 Frame_Shift_Del p.D1580Cfs*71 0.43 TCGA-IW-A3M5-01 6 69348841 69348841 C G BAI3 Missense_Mutation p.H92D 0.18 tolerated(0.38) possibly_damaging(0.888) TCGA-IW-A3M5-01 6 82461412 82461412 G A FAM46A Silent p.R149R 0.47 TCGA-IW-A3M5-01 6 97626435 97626435 T G MMS22L Missense_Mutation p.K855Q 0.47 deleterious(0.01) benign(0.033) TCGA-IW-A3M5-01 7 149153007 149153007 C A ZNF777 Missense_Mutation p.R36L 0.88 tolerated_low_confidence(0.23) benign(0.04) TCGA-IW-A3M5-01 7 156743301 156743301 A G NOM1 Silent p.E290E 0.85 TCGA-IW-A3M5-01 8 110477413 110477413 C G PKHD1L1 Missense_Mutation p.N2784K 0.43 deleterious(0) probably_damaging(0.992) TCGA-IW-A3M5-01 8 124219460 124219460 G A FAM83A Silent p.V279V 0.12 TCGA-IW-A3M5-01 8 77766738 77766738 G A ZFHX4 Silent p.P2527P 0.50 TCGA-IW-A3M5-01 X 101822851 101822851 C T NXF4 RNA 0.12 TCGA-IW-A3M5-01 X 127185556 127185556 G A ACTRT1 Silent p.A210A 0.73 TCGA-IW-A3M5-01 X 38020241 38020242 TG - SRPX Frame_Shift_Del p.T240Sfs*3 0.46 TCGA-IW-A3M5-01 X 74742881 74742882 AG T ZDHHC15 5'UTR 0.21 TCGA-IW-A3M6-01 10 51829380 51829380 G A FAM21A Missense_Mutation p.G67E 0.23 deleterious(0) probably_damaging(1) TCGA-IW-A3M6-01 10 5920135 5920135 T A ANKRD16 Missense_Mutation p.R348S 0.07 tolerated(0.23) benign(0.001) TCGA-IW-A3M6-01 10 96058263 96058263 C A PLCE1 Silent p.A1765A 0.35 TCGA-IW-A3M6-01 11 108199905 108199905 T C ATM Missense_Mutation p.L2416P 0.58 deleterious(0) probably_damaging(0.997) TCGA-IW-A3M6-01 11 18134251 18134251 C T SAA3P RNA 0.39 TCGA-IW-A3M6-01 11 67191267 67191267 T C CARNS1 Missense_Mutation p.V683A 0.58 deleterious(0) possibly_damaging(0.805) TCGA-IW-A3M6-01 12 105440703 105440703 C T ALDH1L2 Silent p.L577L 0.26 TCGA-IW-A3M6-01 12 20799442 20799444 CCA - PDE3A In_Frame_Del p.T758del 0.27 TCGA-IW-A3M6-01 12 32369245 32369245 C T BICD1 Missense_Mutation p.T93M 0.33 deleterious(0) probably_damaging(1) TCGA-IW-A3M6-01 12 78606719 78606719 T G NAV3 3'Flank 0.43 TCGA-IW-A3M6-01 13 114295225 114295225 C T TFDP1 3'UTR 0.48 TCGA-IW-A3M6-01 13 67800272 67800282 AAGCGTGTGCA - PCDH9 Frame_Shift_Del p.L764Cfs*8 0.63 TCGA-IW-A3M6-01 15 26793096 26793096 C T GABRB3 Silent p.P422P 0.22 TCGA-IW-A3M6-01 15 75585465 75585465 C T GOLGA6D Missense_Mutation p.T518M 0.17 tolerated(1) benign(0.036) TCGA-IW-A3M6-01 15 86287028 86287028 G C AKAP13 Missense_Mutation p.K2792N 0.56 deleterious(0.03) benign(0.117) TCGA-IW-A3M6-01 16 1116295 1116295 C T RP11-161M6.5 RNA 0.71 TCGA-IW-A3M6-01 16 70363935 70363935 G T DDX19B Silent p.G329G 0.31 TCGA-IW-A3M6-01 16 71113818 71113818 G T HYDIN Missense_Mutation p.P570T 0.47 probably_damaging(0.991) TCGA-IW-A3M6-01 16 77317536 77317536 A C ADAMTS18 3'UTR 0.57 TCGA-IW-A3M6-01 17 36881942 36881942 C T MLLT6 3'UTR 0.50 TCGA-IW-A3M6-01 17 37627390 37627390 A G CDK12 Silent p.V435V 0.19 TCGA-IW-A3M6-01 17 47117380 47117380 A T IGF2BP1 Missense_Mutation p.T249S 0.31 tolerated(0.16) benign(0.1) TCGA-IW-A3M6-01 17 48434025 48434025 G A XYLT2 Missense_Mutation p.G546S 0.32 deleterious(0.04) possibly_damaging(0.866) TCGA-IW-A3M6-01 17 48460388 48460388 C G LRRC59 Missense_Mutation p.E295D 0.29 tolerated(0.35) benign(0) TCGA-IW-A3M6-01 17 55752430 55752430 G A MSI2 Silent p.G296G 0.32 TCGA-IW-A3M6-01 17 56584179 56584179 G A MTMR4 Silent p.L306L 0.24 TCGA-IW-A3M6-01 17 73748323 73748323 C T ITGB4 Missense_Mutation p.L1288F 0.33 deleterious(0) probably_damaging(1) TCGA-IW-A3M6-01 19 19747792 19747792 T G GMIP Silent p.R391R 0.33 TCGA-IW-A3M6-01 19 2642868 2642868 C A GNG7 Intron 0.13 TCGA-IW-A3M6-01 19 35758744 35758744 G A LSR Silent p.R644R 0.18 TCGA-IW-A3M6-01 19 38990294 38990294 C T RYR1 Silent p.N2349N 0.36 TCGA-IW-A3M6-01 19 4360001 4360001 C G MPND 3'UTR 0.45 TCGA-IW-A3M6-01 19 44514834 44514835 - C ZNF230 Frame_Shift_Ins p.E215Afs*13 0.30 TCGA-IW-A3M6-01 19 52329241 52329241 G C FPR3 3'UTR 0.42 TCGA-IW-A3M6-01 19 52938381 52938381 A G ZNF534 Missense_Mutation p.R77G 0.18 tolerated(0.14) benign(0.03) TCGA-IW-A3M6-01 19 5745969 5745979 CTGTCTTTTGA - CATSPERD Frame_Shift_Del p.S236* 0.31 TCGA-IW-A3M6-01 1 114372223 114372223 T A PTPN22 Silent p.T747T 0.53 TCGA-IW-A3M6-01 1 150483831 150483831 A T ECM1 Intron 0.26 TCGA-IW-A3M6-01 1 151206962 151206962 G A PIP5K1A Missense_Mutation p.R310H 0.26 deleterious(0) probably_damaging(0.985) TCGA-IW-A3M6-01 1 152128339 152128339 A T RPTN Missense_Mutation p.S412R 0.28 deleterious(0.04) possibly_damaging(0.77) TCGA-IW-A3M6-01 1 157772364 157772364 G C FCRL1 Missense_Mutation p.A137G 0.21 deleterious(0) probably_damaging(0.959) TCGA-IW-A3M6-01 1 158725397 158725397 C A OR6K6 Silent p.A264A 0.26 TCGA-IW-A3M6-01 1 167097466 167097466 G A DUSP27 Missense_Mutation p.R1033Q 0.22 tolerated(0.05) benign(0.106) TCGA-IW-A3M6-01 1 175325480 175325480 G A TNR Silent p.G1031G 0.07 TCGA-IW-A3M6-01 1 176668407 176668407 T C PAPPA2 Missense_Mutation p.F973S 0.24 tolerated(0.1) benign(0.087) TCGA-IW-A3M6-01 1 183094669 183094669 G A LAMC1 Missense_Mutation p.G929R 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-IW-A3M6-01 1 204985815 204985815 G A NFASC 3'UTR 0.30 TCGA-IW-A3M6-01 1 70034225 70034225 C T LRRC7 5'UTR 0.79 TCGA-IW-A3M6-01 20 43532648 43532648 A G YWHAB Silent p.K105K 0.42 TCGA-IW-A3M6-01 21 41719779 41719779 T C DSCAM Missense_Mutation p.Q343R 0.08 tolerated(0.34) benign(0.233) TCGA-IW-A3M6-01 21 43905819 43905819 T C RSPH1 Missense_Mutation p.H154R 0.47 deleterious(0) probably_damaging(0.999) TCGA-IW-A3M6-01 21 46951894 46951894 G A SLC19A1 Nonsense_Mutation p.Q120* 0.22 TCGA-IW-A3M6-01 22 38884266 38884267 - A DDX17 Intron 0.61 TCGA-IW-A3M6-01 2 128700080 128700080 A C SAP130 Missense_Mutation p.L1004R 0.32 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IW-A3M6-01 2 130832919 130832919 A G POTEF Missense_Mutation p.V709A 0.32 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-IW-A3M6-01 2 152426886 152426886 A G NEB Silent p.H5713H 0.35 TCGA-IW-A3M6-01 2 179469727 179469727 G T TTN Missense_Mutation p.H18059Q 0.27 TCGA-IW-A3M6-01 2 217279860 217279860 C T SMARCAL1 Nonsense_Mutation p.Q145* 0.67 TCGA-IW-A3M6-01 2 63272304 63272304 G A EHBP1 Silent p.A1198A 0.11 TCGA-IW-A3M6-01 2 73676394 73676394 C T ALMS1 Missense_Mutation p.P913S 0.18 benign(0.426) TCGA-IW-A3M6-01 3 142185195 142185195 A G ATR Missense_Mutation p.W2290R 0.34 deleterious(0.04) probably_damaging(0.991) TCGA-IW-A3M6-01 3 169714357 169714357 G T SEC62 3'UTR 0.50 TCGA-IW-A3M6-01 3 183637972 183637972 C A ABCC5 3'UTR 0.36 TCGA-IW-A3M6-01 3 77147169 77147169 G A ROBO2 Silent p.S38S 0.27 TCGA-IW-A3M6-01 3 8981242 8981242 T C RAD18 Missense_Mutation p.R234G 0.31 deleterious(0) probably_damaging(0.973) TCGA-IW-A3M6-01 5 137520246 137520246 T A KIF20A Missense_Mutation p.S522T 0.35 deleterious(0.05) benign(0.437) TCGA-IW-A3M6-01 5 142603384 142603388 GAAAA - ARHGAP26 3'UTR 0.28 TCGA-IW-A3M6-01 5 149583220 149583236 CCTGGCCCAGGCCCTGG - SLC6A7 Splice_Site p.X363_splice 0.18 TCGA-IW-A3M6-01 5 167894930 167894930 G A WWC1 Missense_Mutation p.G1085D 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-IW-A3M6-01 5 170725847 170725847 C T RANBP17 Silent p.L1084L 0.33 TCGA-IW-A3M6-01 5 178373906 178373906 G A ZNF454 Missense_Mutation p.G57R 0.38 tolerated(0.2) benign(0.34) TCGA-IW-A3M6-01 5 34005864 34005864 A G AMACR Missense_Mutation p.S130P 0.15 deleterious(0) possibly_damaging(0.882) TCGA-IW-A3M6-01 5 55407007 55407007 C T ANKRD55 Missense_Mutation p.R523Q 0.52 tolerated_low_confidence(0.07) benign(0.007) TCGA-IW-A3M6-01 5 85592265 85592265 G A NBPF22P RNA 0.42 TCGA-IW-A3M6-01 5 96098915 96098915 C T ERAP1 Missense_Mutation p.A946T 0.44 unknown(0) TCGA-IW-A3M6-01 6 109748056 109748056 C G PPIL6 Missense_Mutation p.G209R 0.33 deleterious(0) probably_damaging(1) TCGA-IW-A3M6-01 6 157527721 157527721 C T ARID1B Missense_Mutation p.L1816F 0.42 probably_damaging(0.997) TCGA-IW-A3M6-01 6 158490642 158490642 C T SYNJ2 Missense_Mutation p.S626L 0.33 deleterious(0.03) possibly_damaging(0.81) TCGA-IW-A3M6-01 6 29365079 29365079 G T OR12D2 Silent p.T201T 0.59 TCGA-IW-A3M6-01 6 56472778 56472778 C T DST Intron 0.55 TCGA-IW-A3M6-01 6 87796063 87796063 C A CGA Missense_Mutation p.A60S 0.41 deleterious(0) probably_damaging(0.983) TCGA-IW-A3M6-01 7 128477287 128477287 C T FLNC Silent p.A225A 0.41 TCGA-IW-A3M6-01 7 142099890 142099890 C T TRBV7-8 Missense_Mutation p.D17N 0.66 tolerated(0.23) benign(0.009) TCGA-IW-A3M6-01 7 21469742 21469742 C T SP4 Missense_Mutation p.S320F 0.59 deleterious(0.05) probably_damaging(0.962) TCGA-IW-A3M6-01 7 64531307 64531307 G C SNORA22 3'Flank 0.37 TCGA-IW-A3M6-01 8 11177509 11177509 C A MTMR9 Intron 0.35 TCGA-IW-A3M6-01 8 125465228 125465228 T C TRMT12 3'UTR 0.36 TCGA-IW-A3M6-01 8 49985445 49985445 G A C8orf22 Splice_Site p.X19_splice 0.06 TCGA-IW-A3M6-01 8 89128891 89128891 G A MMP16 Missense_Mutation p.R310C 0.33 deleterious(0.03) benign(0.015) TCGA-IW-A3M6-01 9 139750925 139750925 G T MAMDC4 Intron 0.33 TCGA-IW-A3M6-01 X 106119290 106119290 G A TBC1D8B 3'UTR 0.52 TCGA-IW-A3M6-01 X 13337121 13337121 G A ATXN3L Silent p.H311H 0.24 TCGA-IW-A3M6-01 X 51076293 51076293 C T NUDT10 Missense_Mutation p.S159L 0.46 tolerated_low_confidence(0.73) benign(0) TCGA-JV-A5VE-01 10 112349397 112349397 G A SMC3 Missense_Mutation p.R447Q 0.70 tolerated(0.62) benign(0.058) TCGA-JV-A5VE-01 10 74714308 74714308 C T PLA2G12B Missense_Mutation p.V46I 0.66 tolerated(0.77) benign(0.05) TCGA-JV-A5VE-01 11 118039340 118039340 T C SCN2B Missense_Mutation p.N66S 0.04 tolerated(0.08) probably_damaging(0.958) TCGA-JV-A5VE-01 11 124180329 124180329 C A OR8D1 Missense_Mutation p.G112C 0.41 tolerated(1) benign(0.263) TCGA-JV-A5VE-01 11 124743602 124743602 G A ROBO3 Missense_Mutation p.G543E 0.42 deleterious(0.03) probably_damaging(0.945) TCGA-JV-A5VE-01 11 62296044 62296044 C G AHNAK Missense_Mutation p.G1949R 0.35 probably_damaging(0.979) TCGA-JV-A5VE-01 11 62520110 62520110 G A ZBTB3 Nonsense_Mutation p.Q393* 0.36 TCGA-JV-A5VE-01 11 65270167 65270167 G T MALAT1 RNA 0.25 TCGA-JV-A5VE-01 11 65658627 65658627 G T CCDC85B Missense_Mutation p.G125C 0.50 tolerated(0.05) probably_damaging(0.954) TCGA-JV-A5VE-01 11 71850758 71850758 C T FOLR3 Silent p.G249G 0.51 TCGA-JV-A5VE-01 12 1755193 1755193 C T WNT5B Silent p.P285P 0.42 TCGA-JV-A5VE-01 12 39752121 39752121 C A KIF21A Silent p.T358T 0.25 TCGA-JV-A5VE-01 12 56827326 56827326 T C TIMELESS Missense_Mutation p.K121R 0.81 deleterious(0) probably_damaging(0.999) TCGA-JV-A5VE-01 12 8212621 8212621 C T C3AR1 Missense_Mutation p.R54Q 0.60 tolerated(0.07) benign(0.408) TCGA-JV-A5VE-01 13 39598657 39598657 T G PROSER1 Missense_Mutation p.N173H 0.80 deleterious(0.01) possibly_damaging(0.891) TCGA-JV-A5VE-01 14 105420716 105420716 C T AHNAK2 Missense_Mutation p.E358K 0.19 benign(0.331) TCGA-JV-A5VE-01 14 50295796 50295796 G C NEMF Missense_Mutation p.T403R 0.85 deleterious(0.04) possibly_damaging(0.596) TCGA-JV-A5VE-01 14 73436387 73436387 T G ZFYVE1 3'UTR 0.50 TCGA-JV-A5VE-01 15 44067551 44067551 G A ELL3 Missense_Mutation p.P200S 0.89 tolerated(0.12) benign(0.08) TCGA-JV-A5VE-01 16 48218534 48218534 A T ABCC11 Missense_Mutation p.F1025L 0.85 deleterious(0.01) probably_damaging(0.927) TCGA-JV-A5VE-01 16 58575428 58575428 C G CNOT1 Missense_Mutation p.G1593R 0.78 tolerated(0.5) benign(0.029) TCGA-JV-A5VE-01 17 3030180 3030180 G C OR1G1 Missense_Mutation p.F222L 0.42 tolerated(0.11) benign(0.134) TCGA-JV-A5VE-01 19 44103440 44103440 G A ZNF576 3'UTR 0.24 TCGA-JV-A5VE-01 19 51675359 51675359 C A CTD-3187F8.14 Intron 0.39 TCGA-JV-A5VE-01 1 110717458 110717458 C T SLC6A17 Missense_Mutation p.A210V 0.45 deleterious(0.01) possibly_damaging(0.7) TCGA-JV-A5VE-01 1 119426722 119426722 G A TBX15 3'UTR 0.06 TCGA-JV-A5VE-01 1 152648935 152648935 A T LCE2C 3'UTR 0.27 TCGA-JV-A5VE-01 1 169890778 169890778 T G KIFAP3 3'UTR 0.61 TCGA-JV-A5VE-01 1 230975467 230975467 T A C1orf198 3'UTR 0.27 TCGA-JV-A5VE-01 1 36602255 36602255 G C TRAPPC3 3'UTR 0.34 TCGA-JV-A5VE-01 1 84702481 84702481 T G PRKACB 3'UTR 0.40 TCGA-JV-A5VE-01 20 1616943 1616943 C A SIRPG Silent p.V213V 0.05 TCGA-JV-A5VE-01 22 30572514 30572514 A C HORMAD2 3'UTR 0.67 TCGA-JV-A5VE-01 22 38131171 38131171 G A TRIOBP Missense_Mutation p.G1610R 0.45 deleterious_low_confidence(0.01) benign(0.042) TCGA-JV-A5VE-01 2 166854673 166854673 G T SCN1A Missense_Mutation p.P1451T 0.32 deleterious(0) probably_damaging(1) TCGA-JV-A5VE-01 2 169716072 169716072 A G NOSTRIN Silent p.S425S 0.08 TCGA-JV-A5VE-01 2 234115906 234115906 A G INPP5D 3'UTR 0.67 TCGA-JV-A5VE-01 2 48822428 48822428 G T STON1 Missense_Mutation p.C732F 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-JV-A5VE-01 2 96803348 96803348 G T ASTL Silent p.A49A 0.51 TCGA-JV-A5VE-01 3 44916168 44916168 G C TGM4 5'UTR 0.73 TCGA-JV-A5VE-01 4 122301664 122301664 C A QRFPR Missense_Mutation p.A47S 0.60 deleterious(0.02) benign(0.266) TCGA-JV-A5VE-01 4 125593642 125593642 T A ANKRD50 Nonsense_Mutation p.K264* 0.38 TCGA-JV-A5VE-01 4 134070231 134070231 G A PCDH10 5'Flank 0.06 TCGA-JV-A5VE-01 4 153832400 153832400 T C ARFIP1 3'UTR 0.20 TCGA-JV-A5VE-01 4 15993986 15993986 T A PROM1 Missense_Mutation p.E599V 0.44 deleterious(0) probably_damaging(0.972) TCGA-JV-A5VE-01 4 62936386 62936386 C A LPHN3 Silent p.A1390A 0.50 TCGA-JV-A5VE-01 4 83987594 83987594 C G COPS4 Missense_Mutation p.S297C 0.35 tolerated(0.07) benign(0.111) TCGA-JV-A5VE-01 5 131528746 131528746 C T P4HA2 Missense_Mutation p.G522E 0.42 deleterious(0) probably_damaging(0.931) TCGA-JV-A5VE-01 5 138282957 138282957 T C SIL1 Missense_Mutation p.Y412C 0.11 deleterious(0) probably_damaging(0.914) TCGA-JV-A5VE-01 5 140242448 140242448 G A AC005609.1 Silent p.S176S 0.09 TCGA-JV-A5VE-01 5 41307197 41307197 A T PLCXD3 3'UTR 0.52 TCGA-JV-A5VE-01 6 27278742 27278742 G A POM121L2 Missense_Mutation p.P403L 0.27 deleterious(0.03) benign(0.28) TCGA-JV-A5VE-01 6 43489173 43489173 T A POLR1C 3'UTR 0.30 TCGA-JV-A5VE-01 6 96661084 96661084 T C FUT9 3'UTR 0.25 TCGA-JV-A5VE-01 7 100170123 100170123 G T SAP25 Silent p.P129P 0.12 TCGA-JV-A5VE-01 7 103251252 103251252 T A RELN Missense_Mutation p.E966D 0.62 tolerated(0.47) benign(0.196) TCGA-JV-A5VE-01 7 53104409 53104409 T C POM121L12 3'UTR 0.41 TCGA-JV-A5VE-01 7 98771228 98771228 T A KPNA7 3'UTR 0.37 TCGA-JV-A5VE-01 8 100026141 100026142 - A VPS13B Frame_Shift_Ins p.L44Vfs*21 0.25 TCGA-JV-A5VE-01 8 37997070 37997070 G T ASH2L 3'UTR 0.35 TCGA-JV-A5VE-01 8 41790018 41790018 G A KAT6A Missense_Mutation p.P1907L 0.06 unknown(0) TCGA-JV-A5VE-01 8 51363127 51363127 G A SNTG1 Missense_Mutation p.G97R 0.40 deleterious(0) probably_damaging(0.998) TCGA-JV-A5VE-01 9 2097414 2097414 C T SMARCA2 Silent p.N1007N 0.60 TCGA-JV-A5VE-01 9 86593171 86593171 C A HNRNPK 5'UTR 0.32 TCGA-JV-A5VE-01 X 106894214 106894214 G T PRPS1 3'UTR 0.38 TCGA-JV-A5VE-01 X 133922772 133922772 C A FAM122B Missense_Mutation p.R141S 0.38 deleterious(0.04) possibly_damaging(0.823) TCGA-JV-A5VE-01 X 133922773 133922773 C G FAM122B Missense_Mutation p.R141T 0.38 deleterious(0) probably_damaging(0.913) TCGA-JV-A5VE-01 X 152083714 152083714 C A ZNF185 Missense_Mutation p.S64Y 0.06 deleterious(0) probably_damaging(0.994) TCGA-JV-A5VE-01 X 17767563 17767563 T G SCML1 Missense_Mutation p.V81G 0.07 tolerated(0.08) benign(0.003) TCGA-JV-A5VE-01 X 18915280 18915280 C - PHKA2 Splice_Site p.X1094_splice 0.37 TCGA-JV-A5VE-01 X 21667035 21667035 C A CNKSR2 Missense_Mutation p.H927N 0.09 tolerated(0.09) benign(0.017) TCGA-JV-A5VE-01 X 30671562 30671562 C A GK 5'UTR 0.31 TCGA-JV-A5VE-01 X 47006861 47006861 C T RBM10 5'UTR 0.32 TCGA-JV-A5VE-01 X 71359451 71359451 A T NHSL2 Missense_Mutation p.T685S 0.34 tolerated(0.07) probably_damaging(0.991) TCGA-JV-A5VE-01 X 76814204 76814204 C A ATRX Missense_Mutation p.S2147I 0.29 probably_damaging(0.985) TCGA-JV-A5VE-01 X 8997396 8997396 G A FAM9B Silent p.D115D 0.37 TCGA-JV-A5VF-01 10 92501878 92501878 C T HTR7 3'UTR 0.84 TCGA-JV-A5VF-01 11 57970682 57970682 G C OR1S2 Silent p.S324S 0.82 TCGA-JV-A5VF-01 11 57970683 57970683 G T OR1S2 Missense_Mutation p.S324Y 0.83 deleterious(0.03) possibly_damaging(0.548) TCGA-JV-A5VF-01 12 117768721 117768721 C T NOS1 Missense_Mutation p.A52T 0.52 deleterious_low_confidence(0) probably_damaging(1) TCGA-JV-A5VF-01 12 28459799 28459799 A T CCDC91 Missense_Mutation p.N131I 0.55 deleterious(0.02) possibly_damaging(0.812) TCGA-JV-A5VF-01 14 103932363 103932363 A G MARK3 Missense_Mutation p.T278A 0.20 deleterious(0) probably_damaging(0.986) TCGA-JV-A5VF-01 14 35037108 35037108 G T SNX6 Missense_Mutation p.Q357K 0.40 tolerated(0.23) benign(0.018) TCGA-JV-A5VF-01 15 23890948 23890948 G T MAGEL2 Missense_Mutation p.P45T 0.67 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-JV-A5VF-01 15 73994860 73994860 C T CD276 Missense_Mutation p.A115V 0.36 tolerated(0.07) probably_damaging(0.984) TCGA-JV-A5VF-01 16 31097417 31097417 G A PRSS53 Nonsense_Mutation p.Q251* 0.40 TCGA-JV-A5VF-01 17 13400122 13400122 T C HS3ST3A1 Missense_Mutation p.R205G 0.87 deleterious(0.01) benign(0.084) TCGA-JV-A5VF-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.92 deleterious(0) probably_damaging(1) TCGA-JV-A5VF-01 18 31432243 31432243 C G NOL4 3'UTR 0.44 TCGA-JV-A5VF-01 19 52090454 52090454 G T ZNF175 Missense_Mutation p.Q290H 0.65 tolerated(0.1) benign(0.007) TCGA-JV-A5VF-01 1 110257879 110257879 C T GSTM5 Intron 0.33 TCGA-JV-A5VF-01 1 12704626 12704626 G T AADACL4 Missense_Mutation p.V21F 0.29 deleterious(0) possibly_damaging(0.704) TCGA-JV-A5VF-01 1 155112582 155112600 CAAGTAGGCGGGCAGTGGC - DPM3 Frame_Shift_Del p.W69Cfs*41 0.48 TCGA-JV-A5VF-01 1 161494965 161494965 C A HSPA6 Silent p.R173R 0.53 TCGA-JV-A5VF-01 1 220219739 220219739 G A EPRS 5'UTR 0.77 TCGA-JV-A5VF-01 1 220231513 220231513 G A BPNT1 3'UTR 0.85 TCGA-JV-A5VF-01 1 43779614 43779614 G C TIE1 Missense_Mutation p.R795P 0.16 deleterious(0.03) possibly_damaging(0.637) TCGA-JV-A5VF-01 20 25657393 25657393 C T ZNF337 Nonsense_Mutation p.W177* 0.45 TCGA-JV-A5VF-01 20 2845867 2845867 A G VPS16 Missense_Mutation p.D693G 0.59 tolerated(0.71) benign(0.046) TCGA-JV-A5VF-01 20 30681783 30681783 C T HCK Missense_Mutation p.R404W 0.53 deleterious(0) probably_damaging(0.999) TCGA-JV-A5VF-01 20 36720660 36720663 ATTA - RPRD1B 3'UTR 0.61 TCGA-JV-A5VF-01 22 21538173 21538173 C G FAM230B RNA 0.37 TCGA-JV-A5VF-01 2 217340155 217340155 A G SMARCAL1 Missense_Mutation p.E803G 0.60 deleterious(0) probably_damaging(0.999) TCGA-JV-A5VF-01 3 124376359 124376359 T A KALRN Missense_Mutation p.V67E 0.27 deleterious(0) probably_damaging(0.996) TCGA-JV-A5VF-01 4 110624601 110624601 C T CASP6 5'UTR 0.44 TCGA-JV-A5VF-01 4 55163461 55163461 C T PDGFRA 3'UTR 0.48 TCGA-JV-A5VF-01 4 70596312 70596312 A G SULT1B1 Missense_Mutation p.S229P 0.25 deleterious(0) probably_damaging(0.999) TCGA-JV-A5VF-01 6 31613261 31613261 G A BAG6 Nonsense_Mutation p.R353* 0.18 TCGA-JV-A5VF-01 6 42835785 42835785 T C GLTSCR1L 3'UTR 0.54 TCGA-JV-A5VF-01 6 42893006 42893006 G A PTCRA Silent p.P144P 0.38 TCGA-JV-A5VF-01 6 57244708 57244730 GAAGAGAAGACTCTTCGAGAACA - PRIM2 Frame_Shift_Del p.E157Gfs*13 0.16 TCGA-JV-A5VF-01 7 36492449 36492449 G A ANLN 3'UTR 0.53 TCGA-JV-A5VF-01 7 63727246 63727246 A C ZNF679 Nonstop_Mutation p.*412Sext*18 0.32 TCGA-JV-A5VF-01 8 67577245 67577245 G C VCPIP1 Missense_Mutation p.T650S 0.43 deleterious(0.04) possibly_damaging(0.783) TCGA-JV-A5VF-01 9 21481376 21481376 C T IFNE Silent p.T106T 0.52 TCGA-JV-A5VF-01 9 34971603 34971603 C T KIAA1045 Missense_Mutation p.A103V 0.44 deleterious(0.02) possibly_damaging(0.638) TCGA-JV-A5VF-01 X 107422569 107422569 C G COL4A6 Missense_Mutation p.G745A 0.69 probably_damaging(1) TCGA-JV-A5VF-01 X 30845629 30845629 C G TAB3 3'UTR 0.48 TCGA-JV-A5VF-01 X 53107069 53107069 C A GPR173 3'UTR 0.35 TCGA-JV-A5VF-01 X 54161453 54161453 C A FAM120C Missense_Mutation p.G476V 0.08 tolerated(0.21) possibly_damaging(0.823) TCGA-JV-A5VF-01 X 70339254 70339254 G A MED12 Missense_Mutation p.G44D 0.77 probably_damaging(1) TCGA-JV-A5VF-01 X 9905320 9905320 A T SHROOM2 Missense_Mutation p.D1245V 0.38 deleterious(0) probably_damaging(0.99) TCGA-JV-A75J-01 10 29777607 29777607 C A SVIL Missense_Mutation p.R1424L 0.08 deleterious(0) probably_damaging(1) TCGA-JV-A75J-01 10 50085106 50085106 C T WDFY4 Silent p.G2343G 1.00 TCGA-JV-A75J-01 11 60476170 60476170 A G MS4A8 Silent p.A150A 0.60 TCGA-JV-A75J-01 12 53589909 53589909 G A ITGB7 Silent p.D297D 0.56 TCGA-JV-A75J-01 13 42891697 42891697 C T AKAP11 Missense_Mutation p.T1813M 0.12 tolerated(0.19) benign(0.064) TCGA-JV-A75J-01 14 105394089 105394089 C T PLD4 Missense_Mutation p.P57L 0.41 tolerated_low_confidence(0.15) benign(0.014) TCGA-JV-A75J-01 14 20249229 20249229 G C OR4M1 Missense_Mutation p.V250L 0.20 tolerated(0.35) benign(0.002) TCGA-JV-A75J-01 14 96784117 96784117 G A ATG2B Silent p.G985G 0.49 TCGA-JV-A75J-01 15 27777805 27777805 C T GABRG3 Silent p.S394S 0.64 TCGA-JV-A75J-01 15 72190133 72190133 G C MYO9A Missense_Mutation p.L1571V 0.27 tolerated_low_confidence(0.54) benign(0.001) TCGA-JV-A75J-01 16 84230276 84230276 G A ADAD2 Missense_Mutation p.R599H 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-JV-A75J-01 17 45922826 45922826 C T SP6 3'UTR 0.15 TCGA-JV-A75J-01 17 65740062 65740062 C T NOL11 3'UTR 0.11 TCGA-JV-A75J-01 18 72998202 72998202 C T TSHZ1 Silent p.S235S 0.54 TCGA-JV-A75J-01 19 10287970 10287970 C T DNMT1 Silent p.K189K 0.28 TCGA-JV-A75J-01 19 14910135 14910135 G C OR7C1 Missense_Mutation p.L272V 0.05 tolerated_low_confidence(0.08) benign(0.192) TCGA-JV-A75J-01 19 32974764 32974764 G A DPY19L3 3'UTR 0.63 TCGA-JV-A75J-01 19 40957387 40957387 C G BLVRB Missense_Mutation p.W116S 0.22 deleterious(0.01) possibly_damaging(0.9) TCGA-JV-A75J-01 19 50169166 50169166 T A BCL2L12 Missense_Mutation p.I29N 0.40 deleterious_low_confidence(0) possibly_damaging(0.648) TCGA-JV-A75J-01 19 54967914 54967914 C A LENG8 Silent p.R515R 0.52 TCGA-JV-A75J-01 19 57867395 57867395 C T ZNF304 Intron 0.67 TCGA-JV-A75J-01 1 181768252 181768252 A T CACNA1E 3'Flank 0.54 TCGA-JV-A75J-01 1 24484288 24484288 T A IFNLR1 Missense_Mutation p.T299S 0.40 tolerated(0.11) benign(0.115) TCGA-JV-A75J-01 1 67390637 67390637 G C MIER1 5'Flank 0.55 TCGA-JV-A75J-01 20 13279761 13279761 C T ISM1 Silent p.D350D 0.50 TCGA-JV-A75J-01 22 18844193 18844193 G A AC008132.13 3'Flank 0.16 TCGA-JV-A75J-01 22 18844558 18844558 C T BCRP7 Intron 0.40 TCGA-JV-A75J-01 2 198571474 198571474 C G MARS2 Missense_Mutation p.L449V 0.48 tolerated(0.08) benign(0.299) TCGA-JV-A75J-01 3 133495890 133495890 C G TF Intron 0.51 TCGA-JV-A75J-01 3 184009139 184009139 A C ECE2 Missense_Mutation p.K796T 0.49 tolerated(0.23) benign(0.007) TCGA-JV-A75J-01 3 22424060 22424060 G A HMGB1P5 RNA 0.50 TCGA-JV-A75J-01 3 48445713 48445713 C T PLXNB1 3'UTR 0.55 TCGA-JV-A75J-01 4 119154221 119154221 C T NDST3 Missense_Mutation p.S625F 0.38 tolerated(0.95) benign(0.011) TCGA-JV-A75J-01 4 189012788 189012788 A T TRIML2 Silent p.T301T 0.48 TCGA-JV-A75J-01 4 53610776 53610776 C T ERVMER34-1 Silent p.G304G 0.45 TCGA-JV-A75J-01 5 150946545 150946545 A C FAT2 Missense_Mutation p.S650A 0.48 benign(0.155) TCGA-JV-A75J-01 5 33561192 33561192 G C ADAMTS12 Missense_Mutation p.D1355E 0.55 tolerated(0.62) benign(0.143) TCGA-JV-A75J-01 6 116949179 116949179 C T RSPH4A Missense_Mutation p.P437S 0.53 deleterious(0.01) probably_damaging(1) TCGA-JV-A75J-01 6 137813961 137813962 CT - OLIG3 3'UTR 0.37 TCGA-JV-A75J-01 6 147012341 147012341 G C ADGB Silent p.L467L 0.07 TCGA-JV-A75J-01 7 154735971 154735971 T C PAXIP1-AS2 3'UTR 0.14 TCGA-JV-A75J-01 7 36895294 36895295 - G ELMO1 Frame_Shift_Ins p.R683Afs*3 0.31 TCGA-JV-A75J-01 7 44560685 44560685 T C NPC1L1 Missense_Mutation p.I996V 0.41 tolerated(0.5) benign(0) TCGA-JV-A75J-01 7 99564556 99564556 C G AZGP1 3'UTR 0.57 TCGA-JV-A75J-01 9 74481467 74481467 A - ABHD17B Intron 0.08 TCGA-JV-A75J-01 9 86322615 86322615 C T UBQLN1 5'UTR 0.13 TCGA-JV-A75J-01 X 48761766 48761766 C T SLC35A2 Intron 0.41 TCGA-K1-A3PN-01 10 75276255 75276255 T C USP54 Missense_Mutation p.Q1310R 0.49 tolerated_low_confidence(0.14) benign(0.176) TCGA-K1-A3PN-01 11 56143853 56143853 T C OR8U1 Missense_Mutation p.Y252H 0.12 tolerated(0.07) probably_damaging(0.989) TCGA-K1-A3PN-01 11 6221371 6221371 A G OR52W1 Silent p.R306R 0.54 TCGA-K1-A3PN-01 11 70269070 70269070 A G CTTN Missense_Mutation p.K272R 0.45 tolerated(0.21) probably_damaging(0.998) TCGA-K1-A3PN-01 11 75509295 75509295 C T DGAT2 Missense_Mutation p.S278F 0.53 deleterious(0) probably_damaging(0.994) TCGA-K1-A3PN-01 11 76415335 76415335 C T RP11-672A2.3 3'Flank 0.19 TCGA-K1-A3PN-01 12 48437024 48437024 C T SENP1 3'UTR 0.09 TCGA-K1-A3PN-01 14 22591504 22591504 T G TRAV26-1 Missense_Mutation p.V7G 0.16 deleterious(0) benign(0.16) TCGA-K1-A3PN-01 17 10404060 10404060 C A MYH1 Nonsense_Mutation p.E1250* 0.05 TCGA-K1-A3PN-01 17 10404061 10404061 A G MYH1 Silent p.L1249L 0.05 TCGA-K1-A3PN-01 17 11572542 11572542 C T DNAH9 Missense_Mutation p.R965W 0.03 probably_damaging(0.979) TCGA-K1-A3PN-01 17 18967256 18967256 C G SNORD3B-2 RNA 0.42 TCGA-K1-A3PN-01 17 39619137 39619137 G T KRT32 Silent p.R388R 0.47 TCGA-K1-A3PN-01 17 40352428 40352428 T C STAT5B 3'UTR 0.64 TCGA-K1-A3PN-01 17 5035531 5035531 A C USP6 Intron 0.34 TCGA-K1-A3PN-01 17 62026856 62026856 C T SCN4A Silent p.S962S 0.14 TCGA-K1-A3PN-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.85 deleterious(0) probably_damaging(1) TCGA-K1-A3PN-01 17 7945777 7945777 G T ALOX15B Missense_Mutation p.K180N 0.79 deleterious(0) probably_damaging(0.99) TCGA-K1-A3PN-01 18 2656092 2656092 C T SMCHD1 Silent p.G6G 0.43 TCGA-K1-A3PN-01 18 3729210 3729210 C T DLGAP1 Missense_Mutation p.D506N 0.51 deleterious(0) possibly_damaging(0.691) TCGA-K1-A3PN-01 19 2117232 2117232 T A AP3D1 Silent p.P616P 0.20 TCGA-K1-A3PN-01 19 40419641 40419641 G A FCGBP Missense_Mutation p.A1118V 0.12 probably_damaging(1) TCGA-K1-A3PN-01 19 41125334 41125334 C A LTBP4 Nonsense_Mutation p.C1117* 0.46 TCGA-K1-A3PN-01 1 109394814 109394816 TTC - AKNAD1 In_Frame_Del p.K157del 0.55 TCGA-K1-A3PN-01 1 230458310 230458310 T C PGBD5 3'Flank 0.17 TCGA-K1-A3PN-01 1 32713205 32713205 A G FAM167B Silent p.K61K 0.18 TCGA-K1-A3PN-01 1 67301325 67301325 G A WDR78 Missense_Mutation p.P573S 0.45 tolerated(0.25) benign(0.037) TCGA-K1-A3PN-01 20 39792474 39792474 G T PLCG1 Splice_Site p.X337_splice 0.57 TCGA-K1-A3PN-01 20 55917803 55917803 T A SPO11 Missense_Mutation p.D326E 0.29 tolerated(0.33) benign(0.003) TCGA-K1-A3PN-01 20 60587899 60587899 G A TAF4 Missense_Mutation p.A538V 0.14 benign(0.01) TCGA-K1-A3PN-01 20 62577945 62577945 G A UCKL1 Silent p.R55R 0.16 TCGA-K1-A3PN-01 21 38390313 38390313 G A RIPPLY3 Missense_Mutation p.E127K 0.14 tolerated(0.32) benign(0.139) TCGA-K1-A3PN-01 22 21828962 21828962 A C TMEM191C 3'Flank 0.05 TCGA-K1-A3PN-01 22 24730396 24730396 C T SPECC1L Silent p.G805G 0.06 TCGA-K1-A3PN-01 2 231380748 231380748 C A SP100 Intron 0.22 TCGA-K1-A3PN-01 2 54176323 54176323 T C PSME4 Missense_Mutation p.S114G 0.56 tolerated(0.23) benign(0.005) TCGA-K1-A3PN-01 2 96917626 96917626 C A TMEM127 3'UTR 0.11 TCGA-K1-A3PN-01 3 110911220 110911220 C T PVRL3 Missense_Mutation p.T415I 0.55 deleterious_low_confidence(0.02) benign(0.001) TCGA-K1-A3PN-01 3 124826411 124826411 G A SLC12A8 Missense_Mutation p.S540F 0.12 tolerated(0.07) benign(0.008) TCGA-K1-A3PN-01 3 167630632 167630632 A T RP11-298O21.5 RNA 0.51 TCGA-K1-A3PN-01 3 48414164 48414164 T C FBXW12 Intron 0.22 TCGA-K1-A3PN-01 3 50336790 50336790 C T NAT6 5'UTR 0.71 TCGA-K1-A3PN-01 3 9990873 9990873 C A PRRT3 Missense_Mutation p.Q309H 0.59 deleterious_low_confidence(0) possibly_damaging(0.736) TCGA-K1-A3PN-01 4 155253963 155253963 A G DCHS2 Missense_Mutation p.F634L 0.42 deleterious(0) possibly_damaging(0.847) TCGA-K1-A3PN-01 5 140038905 140038905 G T IK Missense_Mutation p.M394I 0.39 tolerated(0.5) benign(0) TCGA-K1-A3PN-01 5 35962918 35962918 A C UGT3A1 Intron 0.10 TCGA-K1-A3PN-01 5 35962920 35962920 A T UGT3A1 Intron 0.10 TCGA-K1-A3PN-01 5 43293070 43293070 C A HMGCS1 Missense_Mutation p.A397S 0.23 tolerated(1) benign(0.004) TCGA-K1-A3PN-01 6 111587229 111587229 A T KIAA1919 Missense_Mutation p.E155V 0.36 tolerated(0.17) benign(0.06) TCGA-K1-A3PN-01 6 167413550 167413550 T A FGFR1OP Silent p.A35A 0.06 TCGA-K1-A3PN-01 6 54805246 54805246 C T FAM83B Missense_Mutation p.R493C 0.92 deleterious(0) probably_damaging(1) TCGA-K1-A3PN-01 7 105671282 105671282 T A CDHR3 Missense_Mutation p.D783E 0.40 deleterious(0) possibly_damaging(0.709) TCGA-K1-A3PN-01 7 128547390 128547390 G A AC025594.1 3'Flank 0.44 TCGA-K1-A3PN-01 7 55910726 55910726 G T SEPT14 Missense_Mutation p.S156Y 0.44 deleterious(0) probably_damaging(0.975) TCGA-K1-A3PN-01 9 131749865 131749865 C T NUP188 Intron 0.09 TCGA-K1-A3PN-01 X 107170149 107170149 T C MID2 Missense_Mutation p.L685P 0.45 tolerated(0.11) probably_damaging(0.998) TCGA-K1-A3PN-01 X 108921608 108921608 A T ACSL4 Missense_Mutation p.M272K 0.20 deleterious(0) benign(0.094) TCGA-K1-A3PN-01 X 115305686 115305686 A C AGTR2 3'UTR 0.40 TCGA-K1-A3PN-01 X 148798425 148798425 G A MAGEA11 Missense_Mutation p.E427K 0.38 deleterious(0) possibly_damaging(0.474) TCGA-K1-A3PN-01 X 53620560 53620560 T C HUWE1 Missense_Mutation p.T1169A 0.32 benign(0.064) TCGA-K1-A6RT-01 10 98764572 98764572 C T SLIT1 Silent p.T1196T 0.08 TCGA-K1-A6RT-01 11 113661099 113661099 C T ATF4P4 RNA 0.05 TCGA-K1-A6RT-01 11 1262268 1262268 C T MUC5B Silent p.P1386P 0.08 TCGA-K1-A6RT-01 11 57509035 57509035 T C C11orf31 5'Flank 0.07 TCGA-K1-A6RT-01 11 9074689 9074689 G A SCUBE2 Silent p.D468D 0.09 TCGA-K1-A6RT-01 12 105597501 105597501 G A APPL2 Silent p.S234S 0.08 TCGA-K1-A6RT-01 12 120882350 120882350 G A TRIAP1 3'UTR 0.06 TCGA-K1-A6RT-01 12 132632260 132632260 A G NOC4L Missense_Mutation p.D179G 0.07 deleterious(0) probably_damaging(0.998) TCGA-K1-A6RT-01 12 3921527 3921528 - T PARP11 Frame_Shift_Ins p.I260Nfs*13 0.08 TCGA-K1-A6RT-01 12 40677723 40677723 A G LRRK2 Missense_Mutation p.N763S 0.12 tolerated(0.78) benign(0.005) TCGA-K1-A6RT-01 12 81331522 81331522 A - LIN7A 5'UTR 0.11 TCGA-K1-A6RT-01 13 42793907 42793907 A C DGKH Missense_Mutation p.K1140T 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-K1-A6RT-01 14 60193747 60193747 C T RTN1 Missense_Mutation p.R552Q 0.06 tolerated(1) benign(0.001) TCGA-K1-A6RT-01 15 101718996 101718996 G A CHSY1 Missense_Mutation p.R336C 0.05 deleterious(0) probably_damaging(1) TCGA-K1-A6RT-01 15 51503060 51503060 T - CYP19A1 Frame_Shift_Del p.N486Tfs*5 0.09 TCGA-K1-A6RT-01 15 74425518 74425518 C T ISLR2 Silent p.D141D 0.07 TCGA-K1-A6RT-01 16 2012550 2012550 G A RPS2 Silent p.I219I 0.05 TCGA-K1-A6RT-01 16 4385189 4385189 C T GLIS2 Silent p.N217N 0.04 TCGA-K1-A6RT-01 16 57416150 57416150 G A CX3CL1 Missense_Mutation p.E134K 0.09 tolerated(0.1) benign(0.119) TCGA-K1-A6RT-01 16 88643648 88643648 C T ZC3H18 Silent p.D39D 0.10 TCGA-K1-A6RT-01 17 40845335 40845335 C T CNTNAP1 Missense_Mutation p.R925C 0.12 deleterious(0) probably_damaging(0.967) TCGA-K1-A6RT-01 17 43531553 43531553 G A PLEKHM1 Silent p.C555C 0.05 TCGA-K1-A6RT-01 17 4906075 4906075 G A KIF1C Missense_Mutation p.V220I 0.04 deleterious(0.03) possibly_damaging(0.52) TCGA-K1-A6RT-01 17 5032074 5032074 T G USP6 Intron 0.06 TCGA-K1-A6RT-01 17 62018556 62018556 C T SCN4A Missense_Mutation p.A1696T 0.06 tolerated(0.28) benign(0.003) TCGA-K1-A6RT-01 17 7577142 7577142 C T TP53 Missense_Mutation p.G266R 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-K1-A6RT-01 19 10897361 10897361 G A DNM2 Missense_Mutation p.R324H 0.04 tolerated(0.18) benign(0.019) TCGA-K1-A6RT-01 19 11658638 11658638 C T CNN1 Silent p.N139N 0.09 TCGA-K1-A6RT-01 19 18968184 18968184 C T UPF1 Missense_Mutation p.A675V 0.06 tolerated(0.05) benign(0.381) TCGA-K1-A6RT-01 19 19339214 19339214 C G NCAN Missense_Mutation p.P929A 0.05 deleterious(0.02) benign(0.368) TCGA-K1-A6RT-01 19 23433144 23433144 A C ZNF724P 5'UTR 0.06 TCGA-K1-A6RT-01 19 2757763 2757763 G A SGTA Missense_Mutation p.S252L 0.08 deleterious(0.04) probably_damaging(0.998) TCGA-K1-A6RT-01 19 45730986 45730986 C T EXOC3L2 Missense_Mutation p.R113Q 0.07 tolerated(0.64) possibly_damaging(0.812) TCGA-K1-A6RT-01 19 4941833 4941833 C T UHRF1 RNA 0.09 TCGA-K1-A6RT-01 19 55853410 55853410 G A SUV420H2 Missense_Mutation p.V36I 0.05 tolerated(0.42) benign(0.002) TCGA-K1-A6RT-01 19 57327590 57327590 A T PEG3 Silent p.P740P 0.07 TCGA-K1-A6RT-01 19 984470 984470 G A WDR18 Silent p.A39A 0.05 TCGA-K1-A6RT-01 1 1017805 1017805 C T C1orf159 3'UTR 0.09 TCGA-K1-A6RT-01 1 117530291 117530291 T C PTGFRN 3'UTR 0.08 TCGA-K1-A6RT-01 1 160394931 160394931 G A VANGL2 Silent p.A443A 0.14 TCGA-K1-A6RT-01 1 162825062 162825062 C A C1orf110 Missense_Mutation p.M134I 0.10 tolerated(0.52) benign(0.092) TCGA-K1-A6RT-01 1 21231416 21231416 C T EIF4G3 Missense_Mutation p.R521Q 0.07 tolerated_low_confidence(0.58) benign(0.002) TCGA-K1-A6RT-01 1 29644393 29644393 A T PTPRU Missense_Mutation p.D1226V 0.08 deleterious(0) possibly_damaging(0.868) TCGA-K1-A6RT-01 1 35853198 35853198 T C ZMYM4 Silent p.C752C 0.08 TCGA-K1-A6RT-01 1 54690908 54690908 A G SSBP3 3'Flank 0.03 TCGA-K1-A6RT-01 1 55273670 55273670 C T C1orf177 Nonsense_Mutation p.R156* 0.05 TCGA-K1-A6RT-01 1 87194113 87194113 G C SH3GLB1 Missense_Mutation p.D200H 0.07 deleterious(0.02) benign(0.366) TCGA-K1-A6RT-01 1 887818 887818 G A NOC2L Missense_Mutation p.R389C 0.07 deleterious(0) possibly_damaging(0.887) TCGA-K1-A6RT-01 20 20025949 20025949 T C CRNKL1 Intron 0.13 TCGA-K1-A6RT-01 22 21066994 21066994 G A PI4KA Missense_Mutation p.A1888V 0.05 deleterious(0) probably_damaging(0.971) TCGA-K1-A6RT-01 22 26070442 26070442 A G ADRBK2 Silent p.G198G 0.03 TCGA-K1-A6RT-01 22 29879546 29879546 G A NEFH Missense_Mutation p.D356N 0.07 tolerated(0.06) unknown(0) TCGA-K1-A6RT-01 22 30887634 30887634 A G SEC14L4 Missense_Mutation p.V336A 0.05 deleterious(0) probably_damaging(0.999) TCGA-K1-A6RT-01 22 39438966 39438966 A C APOBEC3F Silent p.R14R 0.04 TCGA-K1-A6RT-01 22 41936795 41936795 A G POLR3H Missense_Mutation p.V39A 0.07 deleterious(0) possibly_damaging(0.7) TCGA-K1-A6RT-01 22 41968126 41968126 C T CSDC2 Missense_Mutation p.R53W 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-K1-A6RT-01 22 51153406 51153406 C T SHANK3 Silent p.D748D 0.06 TCGA-K1-A6RT-01 2 102851729 102851729 G A IL1RL2 Missense_Mutation p.R557H 0.19 tolerated(0.56) benign(0.151) TCGA-K1-A6RT-01 2 166188041 166188041 C T SCN2A Missense_Mutation p.T784M 0.19 deleterious(0) probably_damaging(0.996) TCGA-K1-A6RT-01 2 220047258 220047258 A G FAM134A Silent p.T513T 0.12 TCGA-K1-A6RT-01 2 233321768 233321768 C T ALPI Missense_Mutation p.R154W 0.08 tolerated(0.21) benign(0.017) TCGA-K1-A6RT-01 2 27264273 27264273 G A TMEM214 3'UTR 0.10 TCGA-K1-A6RT-01 2 27282286 27282286 G T AGBL5 Intron 0.12 TCGA-K1-A6RT-01 2 43458367 43458367 C T THADA Missense_Mutation p.R1861H 0.11 tolerated(0.29) benign(0.001) TCGA-K1-A6RT-01 2 48066103 48066103 T C FBXO11 Missense_Mutation p.D161G 0.04 deleterious(0) possibly_damaging(0.619) TCGA-K1-A6RT-01 3 150881814 150881814 G A MED12L Silent p.T414T 0.09 TCGA-K1-A6RT-01 3 47470002 47470002 C T SCAP Splice_Site p.X137_splice 0.09 TCGA-K1-A6RT-01 3 4836803 4836803 C T ITPR1 Missense_Mutation p.S2273L 0.08 tolerated(0.2) benign(0.283) TCGA-K1-A6RT-01 3 57612674 57612674 A G DENND6A 3'UTR 0.07 TCGA-K1-A6RT-01 4 2692464 2692464 C T FAM193A Missense_Mutation p.P566L 0.08 deleterious(0.03) benign(0.195) TCGA-K1-A6RT-01 5 132534717 132534717 C T FSTL4 3'UTR 0.06 TCGA-K1-A6RT-01 5 140048683 140048683 G A WDR55 Missense_Mutation p.C227Y 0.09 deleterious(0) probably_damaging(0.99) TCGA-K1-A6RT-01 5 140391798 140391798 G A PCDHAC1 3'UTR 0.10 TCGA-K1-A6RT-01 5 140558575 140558575 C T PCDHB8 Silent p.I320I 0.04 TCGA-K1-A6RT-01 5 140720192 140720192 G A PCDHGA2 Missense_Mutation p.V552M 0.04 deleterious_low_confidence(0.01) probably_damaging(0.954) TCGA-K1-A6RT-01 5 141248271 141248271 C T PCDH1 Missense_Mutation p.G256S 0.10 deleterious(0) probably_damaging(1) TCGA-K1-A6RT-01 5 149786472 149786472 G A CD74 Missense_Mutation p.A117V 0.06 tolerated(0.8) benign(0.064) TCGA-K1-A6RT-01 5 16668424 16668424 C T MYO10 Missense_Mutation p.V2013M 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-K1-A6RT-01 5 35954571 35954571 C T UGT3A1 Silent p.S435S 0.08 TCGA-K1-A6RT-01 5 78908286 78908286 C G PAPD4 5'UTR 0.13 TCGA-K1-A6RT-01 6 107475801 107475801 A G PDSS2 3'UTR 0.06 TCGA-K1-A6RT-01 6 129637283 129637283 A G LAMA2 Missense_Mutation p.K1342R 0.10 tolerated(0.06) probably_damaging(0.951) TCGA-K1-A6RT-01 6 138607990 138607990 C T KIAA1244 Missense_Mutation p.R908W 0.08 deleterious(0) probably_damaging(0.924) TCGA-K1-A6RT-01 6 146756992 146756992 C T GRM1 3'UTR 0.05 TCGA-K1-A6RT-01 6 160526397 160526397 G A IGF2R 3'UTR 0.05 TCGA-K1-A6RT-01 7 112757397 112757397 A C LINC00998 3'UTR 0.09 TCGA-K1-A6RT-01 7 134931257 134931257 G A STRA8 Missense_Mutation p.A179T 0.07 tolerated(0.6) benign(0.131) TCGA-K1-A6RT-01 7 295837 295837 C T FAM20C Silent p.G365G 0.05 TCGA-K1-A6RT-01 8 144695957 144695957 G A TSTA3 Missense_Mutation p.R232W 0.05 deleterious(0.02) benign(0.168) TCGA-K1-A6RT-01 8 28909093 28909093 C T HMBOX1 3'UTR 0.05 TCGA-K1-A6RT-01 8 29989494 29989494 A G LEPROTL1 Intron 0.10 TCGA-K1-A6RT-01 8 99057771 99057771 A C RPL30 5'Flank 0.19 TCGA-K1-A6RT-01 9 107576725 107576725 A G ABCA1 Missense_Mutation p.V1257A 0.08 tolerated(0.23) benign(0.05) TCGA-K1-A6RT-01 9 130476545 130476545 C T PTRH1 Missense_Mutation p.R160Q 0.08 deleterious(0.02) possibly_damaging(0.603) TCGA-K1-A6RT-01 9 130996314 130996314 G A DNM1 Silent p.P450P 0.06 TCGA-K1-A6RT-01 9 131669842 131669842 G A LRRC8A Silent p.T133T 0.10 TCGA-K1-A6RT-01 9 139649957 139649957 T A LCN8 Missense_Mutation p.I80F 0.10 deleterious(0) possibly_damaging(0.805) TCGA-K1-A6RT-01 9 35101135 35101135 C T STOML2 Missense_Mutation p.A241T 0.10 tolerated(0.47) possibly_damaging(0.543) TCGA-K1-A6RT-01 X 134556249 134556249 G A LINC00086 RNA 0.06 TCGA-K1-A6RT-01 X 5811130 5811130 C T NLGN4X Missense_Mutation p.E727K 0.08 deleterious_low_confidence(0.01) benign(0.084) TCGA-K1-A6RT-01 X 9728813 9728813 C T GPR143 Missense_Mutation p.V102I 0.10 tolerated(1) benign(0.001) TCGA-K1-A6RU-01 10 85997174 85997174 G T LRIT1 Missense_Mutation p.P131T 0.21 deleterious(0) probably_damaging(1) TCGA-K1-A6RU-01 11 121429444 121429444 G A SORL1 Silent p.T936T 0.14 TCGA-K1-A6RU-01 11 60165446 60165446 C A MS4A14 Missense_Mutation p.A87E 0.80 deleterious(0) probably_damaging(0.993) TCGA-K1-A6RU-01 12 98987855 98987855 C T SLC25A3 Silent p.S33S 0.17 TCGA-K1-A6RU-01 12 98989563 98989563 C A SLC25A3 Intron 0.11 TCGA-K1-A6RU-01 13 25802650 25802650 A G MTMR6 3'UTR 0.61 TCGA-K1-A6RU-01 13 48947579 48947579 T G RB1 Nonsense_Mutation p.L389* 0.58 TCGA-K1-A6RU-01 15 49127052 49127052 T A SHC4 Missense_Mutation p.S551C 0.30 deleterious(0) probably_damaging(1) TCGA-K1-A6RU-01 15 54914551 54914551 C T UNC13C Nonsense_Mutation p.Q2045* 0.24 TCGA-K1-A6RU-01 15 88121685 88121685 C T LINC00052 RNA 0.19 TCGA-K1-A6RU-01 15 93588269 93588269 C T RGMA Missense_Mutation p.A446T 0.35 tolerated(0.32) unknown(0) TCGA-K1-A6RU-01 16 1257370 1257370 C T CACNA1H Silent p.F1001F 0.45 TCGA-K1-A6RU-01 17 1325746 1325746 C A CRK 3'UTR 0.23 TCGA-K1-A6RU-01 17 37628001 37628001 A T CDK12 Missense_Mutation p.D639V 0.17 possibly_damaging(0.644) TCGA-K1-A6RU-01 18 47769371 47769371 T G CCDC11 Missense_Mutation p.K371T 0.17 tolerated(0.59) possibly_damaging(0.701) TCGA-K1-A6RU-01 19 10224654 10224654 G A P2RY11 Missense_Mutation p.C122Y 0.13 deleterious(0.03) possibly_damaging(0.461) TCGA-K1-A6RU-01 19 36322588 36322588 G A NPHS1 Silent p.V1081V 0.23 TCGA-K1-A6RU-01 19 53576670 53576670 T G ZNF160 Intron 0.13 TCGA-K1-A6RU-01 1 110155507 110155507 C G GNAT2 5'UTR 0.08 TCGA-K1-A6RU-01 1 178854229 178854229 C G RALGPS2 Missense_Mutation p.S308C 0.10 tolerated(0.06) possibly_damaging(0.566) TCGA-K1-A6RU-01 1 196709781 196709781 C T CFH Missense_Mutation p.H939Y 0.10 tolerated(0.24) benign(0.001) TCGA-K1-A6RU-01 1 21133158 21133158 A T EIF4G3 3'UTR 0.11 TCGA-K1-A6RU-01 1 235577820 235577820 G A TBCE Silent p.K86K 0.10 TCGA-K1-A6RU-01 1 29652831 29652831 G T PTPRU 3'Flank 0.17 TCGA-K1-A6RU-01 1 38269624 38269624 C A YRDC Silent p.L271L 0.30 TCGA-K1-A6RU-01 1 57378074 57378074 A G C8A Splice_Site p.X461_splice 0.17 TCGA-K1-A6RU-01 1 60333955 60333955 G C HOOK1 Missense_Mutation p.A627P 0.29 tolerated(0.18) probably_damaging(0.977) TCGA-K1-A6RU-01 1 82402483 82402483 A G LPHN2 Missense_Mutation p.Y120C 0.16 deleterious(0) probably_damaging(1) TCGA-K1-A6RU-01 21 18937853 18937853 C G CXADR Missense_Mutation p.S314C 0.31 deleterious(0.01) possibly_damaging(0.67) TCGA-K1-A6RU-01 21 19647612 19647612 G A TMPRSS15 Silent p.L936L 0.31 TCGA-K1-A6RU-01 21 45732052 45732052 C T PFKL Missense_Mutation p.A101V 0.08 deleterious(0) possibly_damaging(0.509) TCGA-K1-A6RU-01 2 112615924 112615924 T A ANAPC1 Missense_Mutation p.Q439H 0.23 deleterious(0.01) possibly_damaging(0.584) TCGA-K1-A6RU-01 2 137814609 137814609 G T THSD7B Silent p.L253L 0.27 TCGA-K1-A6RU-01 2 209141504 209141504 C T PIKFYVE Missense_Mutation p.L131F 0.26 tolerated(0.1) probably_damaging(0.999) TCGA-K1-A6RU-01 2 227662246 227662246 G A IRS1 Silent p.T403T 0.11 TCGA-K1-A6RU-01 2 61726902 61726902 A G XPO1 Missense_Mutation p.F179S 0.41 deleterious(0) probably_damaging(1) TCGA-K1-A6RU-01 3 44303960 44303960 A C TOPAZ1 Missense_Mutation p.Y1002S 0.36 tolerated(0.31) benign(0.01) TCGA-K1-A6RU-01 4 115585186 115585186 T C UGT8 Silent p.H286H 0.31 TCGA-K1-A6RU-01 4 1231728 1231728 G A CTBP1 Intron 0.19 TCGA-K1-A6RU-01 5 41017989 41017989 C T MROH2B Silent p.A949A 0.20 TCGA-K1-A6RU-01 6 146956624 146956624 C T ADGB Missense_Mutation p.A63V 0.05 tolerated(0.16) benign(0.08) TCGA-K1-A6RU-01 6 44245893 44245916 CCTCTGGCTCCCCTTCCCTTCTTC AGCCTCTGGCTCCCCTTCCCTT TMEM151B 3'UTR 0.10 TCGA-K1-A6RU-01 7 44044570 44044570 C T SPDYE1 Intron 0.29 TCGA-K1-A6RU-01 8 143846101 143846101 G T LYNX1 Nonsense_Mutation p.C106* 0.29 TCGA-K1-A6RU-01 8 56438083 56438083 T A XKR4 3'UTR 0.24 TCGA-K1-A6RU-01 9 21201535 21201535 T A IFNA7 3'UTR 0.28 TCGA-K1-A6RU-01 X 140271246 140271246 C T LDOC1 5'UTR 0.22 TCGA-K1-A6RU-01 X 17121869 17121869 A G REPS2 Silent p.P515P 0.40 TCGA-K1-A6RU-01 X 76814218 76814221 AGAT - ATRX Frame_Shift_Del p.S2142Mfs*24 0.40 TCGA-K1-A6RV-01 10 27403538 27403538 T C YME1L1 Splice_Site p.X698_splice 0.15 TCGA-K1-A6RV-01 10 5199959 5199959 C G AKR1CL1 3'Flank 0.14 TCGA-K1-A6RV-01 10 52066122 52066122 T C SGMS1 3'UTR 0.25 TCGA-K1-A6RV-01 10 97131754 97131754 C G SORBS1 Missense_Mutation p.R597T 0.44 deleterious_low_confidence(0.02) probably_damaging(0.997) TCGA-K1-A6RV-01 10 97951794 97951794 G C BLNK Missense_Mutation p.L436V 0.18 deleterious(0) probably_damaging(0.997) TCGA-K1-A6RV-01 11 118083638 118083638 C T AMICA1 Intron 0.32 TCGA-K1-A6RV-01 11 125867223 125867223 C G CDON Silent p.G747G 0.37 TCGA-K1-A6RV-01 11 2189744 2189744 A C TH Missense_Mutation p.V186G 0.68 deleterious(0.05) possibly_damaging(0.864) TCGA-K1-A6RV-01 11 61508747 61508747 C G DAGLA Silent p.L699L 0.33 TCGA-K1-A6RV-01 11 62284533 62284571 CATCACTGAATGAATTTGAGCGGTGCCGTGGCTTCTTAC TCA AHNAK In_Frame_Del p.S5773_E5786delinsMK 0.72 TCGA-K1-A6RV-01 11 62416816 62416816 C A INTS5 Missense_Mutation p.G246C 0.42 deleterious(0) probably_damaging(1) TCGA-K1-A6RV-01 11 6292222 6292222 G A CCKBR Intron 0.42 TCGA-K1-A6RV-01 11 67075346 67075346 C T SSH3 Missense_Mutation p.A274V 0.25 tolerated(0.23) benign(0.311) TCGA-K1-A6RV-01 11 68204446 68204446 G T LRP5 Missense_Mutation p.G1364C 0.58 deleterious(0) probably_damaging(0.96) TCGA-K1-A6RV-01 11 88300954 88300954 A C GRM5 Missense_Mutation p.F633V 0.47 deleterious(0) probably_damaging(0.999) TCGA-K1-A6RV-01 12 109826600 109826600 C A MYO1H Missense_Mutation p.S26Y 0.05 deleterious(0.02) possibly_damaging(0.632) TCGA-K1-A6RV-01 12 123950941 123950941 G T SNRNP35 3'Flank 0.20 TCGA-K1-A6RV-01 12 5155400 5155400 G A KCNA5 3'UTR 0.37 TCGA-K1-A6RV-01 12 56848076 56848076 T A MIP Missense_Mutation p.T108S 0.74 tolerated(0.09) probably_damaging(0.999) TCGA-K1-A6RV-01 12 9312564 9312564 T C PZP Missense_Mutation p.E1036G 0.29 tolerated(0.08) benign(0.422) TCGA-K1-A6RV-01 13 110828798 110828798 C A COL4A1 Nonsense_Mutation p.G1011* 0.33 TCGA-K1-A6RV-01 13 113732739 113732739 C T MCF2L Missense_Mutation p.R575W 0.19 deleterious(0) probably_damaging(0.946) TCGA-K1-A6RV-01 13 113750853 113750853 G A MCF2L Intron 0.15 TCGA-K1-A6RV-01 15 49776814 49776814 G T FGF7 3'UTR 0.32 TCGA-K1-A6RV-01 15 75979836 75979836 C G CSPG4 Missense_Mutation p.Q1190H 0.54 tolerated(0.19) benign(0.027) TCGA-K1-A6RV-01 15 99670639 99670639 C T SYNM Silent p.L691L 0.70 TCGA-K1-A6RV-01 16 23403732 23403732 T C COG7 Silent p.P705P 0.54 TCGA-K1-A6RV-01 17 26089875 26089875 T C NOS2 Missense_Mutation p.T917A 0.24 tolerated(0.35) benign(0.012) TCGA-K1-A6RV-01 17 26880465 26880465 T C PIGS 3'UTR 0.50 TCGA-K1-A6RV-01 17 41007484 41007484 G A AOC3 Missense_Mutation p.R637Q 0.52 deleterious(0.03) probably_damaging(0.974) TCGA-K1-A6RV-01 17 43481440 43481440 C A ARHGAP27 Missense_Mutation p.G160V 0.28 deleterious(0) probably_damaging(1) TCGA-K1-A6RV-01 17 46058946 46058946 C T CDK5RAP3 3'UTR 0.25 TCGA-K1-A6RV-01 17 59104259 59104260 - A BCAS3 Frame_Shift_Ins p.A559Sfs*6 0.29 TCGA-K1-A6RV-01 17 71431719 71431719 G C SDK2 Silent p.T355T 0.21 TCGA-K1-A6RV-01 17 7578204 7578204 A C TP53 Missense_Mutation p.S215R 0.72 deleterious(0) probably_damaging(1) TCGA-K1-A6RV-01 18 29116347 29116347 A G DSG2 Missense_Mutation p.K536E 0.32 tolerated(1) benign(0.004) TCGA-K1-A6RV-01 18 7231877 7231877 C A LRRC30 Silent p.L247L 0.11 TCGA-K1-A6RV-01 19 16339600 16339600 G A AP1M1 Missense_Mutation p.R315Q 0.40 tolerated(0.09) benign(0.15) TCGA-K1-A6RV-01 19 33312091 33312091 G A CTD-2085J24.5 3'Flank 0.43 TCGA-K1-A6RV-01 19 44661690 44661691 AG - ZNF234 Frame_Shift_Del p.K510Tfs*3 0.26 TCGA-K1-A6RV-01 19 45851923 45851923 G A KLC3 Missense_Mutation p.E267K 0.30 deleterious(0) probably_damaging(0.972) TCGA-K1-A6RV-01 19 53794577 53794577 G A BIRC8 5'UTR 0.34 TCGA-K1-A6RV-01 19 54649722 54649722 G A CNOT3 Silent p.T260T 0.18 TCGA-K1-A6RV-01 19 6963818 6963818 G A EMR4P RNA 0.05 TCGA-K1-A6RV-01 1 154474064 154474064 G T SHE Missense_Mutation p.L147I 0.30 deleterious(0) possibly_damaging(0.887) TCGA-K1-A6RV-01 1 160535413 160535413 T C CD84 Missense_Mutation p.K57E 0.19 tolerated(0.73) benign(0.003) TCGA-K1-A6RV-01 1 1684501 1684501 T A NADK Splice_Site p.X540_splice 0.80 TCGA-K1-A6RV-01 1 205892290 205892290 T G SLC26A9 Missense_Mutation p.K565Q 0.58 deleterious(0.05) possibly_damaging(0.886) TCGA-K1-A6RV-01 1 32151243 32151243 T C COL16A1 Silent p.K671K 0.27 TCGA-K1-A6RV-01 1 3328332 3328332 C A PRDM16 Missense_Mutation p.P524H 0.76 tolerated(0.62) benign(0.047) TCGA-K1-A6RV-01 1 36553137 36553137 T A TEKT2 Missense_Mutation p.L318Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-K1-A6RV-01 1 78031803 78031803 C G ZZZ3 Missense_Mutation p.E844Q 0.13 tolerated(0.11) benign(0.087) TCGA-K1-A6RV-01 1 78031815 78031815 C T ZZZ3 Missense_Mutation p.D840N 0.11 deleterious(0.03) probably_damaging(0.998) TCGA-K1-A6RV-01 1 78031848 78031848 C T ZZZ3 Missense_Mutation p.E829K 0.11 deleterious(0.03) possibly_damaging(0.825) TCGA-K1-A6RV-01 20 2298099 2298099 A G TGM3 Silent p.G317G 0.10 TCGA-K1-A6RV-01 20 23345161 23345161 G A GZF1 Missense_Mutation p.M47I 0.51 tolerated(0.48) benign(0.011) TCGA-K1-A6RV-01 20 32868664 32868664 C T AHCY 3'UTR 0.15 TCGA-K1-A6RV-01 20 42789014 42789014 C T JPH2 Missense_Mutation p.R138H 0.64 deleterious(0) probably_damaging(0.998) TCGA-K1-A6RV-01 20 61982044 61982044 C T CHRNA4 Missense_Mutation p.R240Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-K1-A6RV-01 22 18220804 18220804 G A BID Silent p.Y231Y 0.42 TCGA-K1-A6RV-01 22 33669222 33669222 G C LARGE 3'UTR 0.68 TCGA-K1-A6RV-01 2 163279886 163279886 T C KCNH7 Missense_Mutation p.Q705R 0.13 deleterious(0) possibly_damaging(0.878) TCGA-K1-A6RV-01 2 169948327 169948327 C T DHRS9 Silent p.H200H 0.61 TCGA-K1-A6RV-01 2 241700664 241700664 G C KIF1A Missense_Mutation p.S749R 0.75 deleterious(0) benign(0.11) TCGA-K1-A6RV-01 2 27255829 27255829 G A TMEM214 5'UTR 0.82 TCGA-K1-A6RV-01 2 74690335 74690335 G A MOGS Missense_Mutation p.T253I 0.07 tolerated(0.15) benign(0.159) TCGA-K1-A6RV-01 3 127642187 127642187 G C KBTBD12 Missense_Mutation p.E95Q 0.16 tolerated(0.49) benign(0.009) TCGA-K1-A6RV-01 3 16638396 16638396 C A DAZL Missense_Mutation p.C140F 0.44 tolerated(0.21) probably_damaging(0.921) TCGA-K1-A6RV-01 3 185867916 185867916 A G DGKG Missense_Mutation p.F780S 0.28 deleterious(0.04) unknown(0) TCGA-K1-A6RV-01 3 40231809 40231809 C T MYRIP Missense_Mutation p.T507I 0.45 tolerated(0.11) probably_damaging(1) TCGA-K1-A6RV-01 4 123949450 123949450 C T SPATA5 Missense_Mutation p.P660L 0.32 deleterious(0) possibly_damaging(0.829) TCGA-K1-A6RV-01 4 146073775 146073775 G C OTUD4 Missense_Mutation p.H231D 0.09 deleterious(0.01) benign(0.027) TCGA-K1-A6RV-01 4 155526029 155526029 G A FGG Missense_Mutation p.A440V 0.15 tolerated_low_confidence(1) benign(0) TCGA-K1-A6RV-01 4 169196590 169196590 C T DDX60 Missense_Mutation p.R737Q 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-K1-A6RV-01 4 83987617 83987617 A T COPS4 Missense_Mutation p.I305F 0.14 tolerated(0.1) benign(0.049) TCGA-K1-A6RV-01 5 110438084 110438084 A G WDR36 Missense_Mutation p.T251A 0.24 deleterious(0.01) possibly_damaging(0.786) TCGA-K1-A6RV-01 5 136954023 136954023 T C KLHL3 3'UTR 0.14 TCGA-K1-A6RV-01 5 143191737 143191737 G A HMHB1 5'UTR 0.67 TCGA-K1-A6RV-01 5 168233468 168233468 C T SLIT3 Silent p.P306P 0.38 TCGA-K1-A6RV-01 5 169469044 169469044 G A DOCK2 Missense_Mutation p.V1262I 0.38 deleterious(0.01) benign(0.065) TCGA-K1-A6RV-01 5 176883203 176883203 G T PRR7 3'UTR 0.60 TCGA-K1-A6RV-01 5 36039752 36039752 C T UGT3A2 Missense_Mutation p.G301D 0.21 deleterious(0) probably_damaging(0.995) TCGA-K1-A6RV-01 5 37443374 37443374 C T WDR70 Missense_Mutation p.R196C 0.55 deleterious(0) probably_damaging(1) TCGA-K1-A6RV-01 5 65346654 65346654 C A ERBB2IP Missense_Mutation p.H649Q 0.13 tolerated(0.26) possibly_damaging(0.564) TCGA-K1-A6RV-01 5 74323873 74323873 C T GCNT4 3'UTR 0.08 TCGA-K1-A6RV-01 5 86645033 86645033 G A RASA1 Missense_Mutation p.G369S 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-K1-A6RV-01 5 86645158 86645158 G A RASA1 Missense_Mutation p.M410I 0.24 tolerated(0.2) benign(0.013) TCGA-K1-A6RV-01 5 89990459 89990459 G A GPR98 Missense_Mutation p.G2629E 0.30 probably_damaging(0.999) TCGA-K1-A6RV-01 5 99871501 99871501 C T FAM174A Silent p.A89A 0.12 TCGA-K1-A6RV-01 6 158915857 158915857 C T TULP4 Silent p.L617L 0.33 TCGA-K1-A6RV-01 6 26505348 26505348 T C BTN1A1 Missense_Mutation p.I208T 0.25 deleterious(0) probably_damaging(0.932) TCGA-K1-A6RV-01 7 102742171 102742171 A G NAPEPLD 3'UTR 0.24 TCGA-K1-A6RV-01 7 111846832 111846832 T A ZNF277 Missense_Mutation p.C21S 0.22 tolerated_low_confidence(0.4) benign(0) TCGA-K1-A6RV-01 7 112721538 112721539 CA TAT GPR85 3'UTR 0.28 TCGA-K1-A6RV-01 7 142149126 142149126 T A TRBV5-5 Nonsense_Mutation p.K49* 0.26 TCGA-K1-A6RV-01 7 144096231 144096231 G A NOBOX Silent p.P427P 0.58 TCGA-K1-A6RV-01 7 150784064 150784064 T A AGAP3 Missense_Mutation p.V79E 0.29 deleterious(0) probably_damaging(0.999) TCGA-K1-A6RV-01 7 154667715 154667715 C T DPP6 Silent p.D661D 0.19 TCGA-K1-A6RV-01 8 110516561 110516561 A C PKHD1L1 Missense_Mutation p.T3612P 0.34 deleterious(0) probably_damaging(0.992) TCGA-K1-A6RV-01 8 145139735 145139735 A G GPAA1 Missense_Mutation p.Y374C 0.23 deleterious(0) probably_damaging(1) TCGA-K1-A6RV-01 9 104124067 104124067 A T BAAT 3'UTR 0.14 TCGA-K1-A6RV-01 9 116191512 116191512 T C C9orf43 Missense_Mutation p.V411A 0.24 tolerated(0.16) benign(0.392) TCGA-K1-A6RV-01 9 38596278 38596278 C G ANKRD18A Missense_Mutation p.K353N 0.37 tolerated(0.08) possibly_damaging(0.788) TCGA-K1-A6RV-01 9 74365130 74365130 G T TMEM2 Silent p.R54R 0.24 TCGA-K1-A6RV-01 9 98224137 98224137 C G PTCH1 Splice_Site p.X901_splice 0.13 TCGA-K1-A6RV-01 X 51075934 51075934 C T NUDT10 Silent p.S39S 0.77 TCGA-KD-A5QS-01 10 13237231 13237231 C G MCM10 Missense_Mutation p.P647A 0.42 tolerated(0.09) possibly_damaging(0.534) TCGA-KD-A5QS-01 10 134916200 134916200 G T GPR123 Splice_Site p.X86_splice 0.68 TCGA-KD-A5QS-01 10 135024137 135024137 G C KNDC1 Missense_Mutation p.V1273L 0.80 deleterious(0.05) benign(0.06) TCGA-KD-A5QS-01 10 27539404 27539404 G C RP11-85G18.6 RNA 0.29 TCGA-KD-A5QS-01 10 38736616 38736616 A G LINC00999 3'UTR 0.23 TCGA-KD-A5QS-01 10 45939225 45939225 C A ALOX5 Silent p.T541T 0.40 TCGA-KD-A5QS-01 10 64573803 64573803 A C EGR2 Missense_Mutation p.S199A 0.18 tolerated(0.6) benign(0) TCGA-KD-A5QS-01 10 71332468 71332468 G C NEUROG3 Missense_Mutation p.P111R 0.55 deleterious(0) probably_damaging(1) TCGA-KD-A5QS-01 11 128838794 128838794 C T ARHGAP32 3'UTR 0.96 TCGA-KD-A5QS-01 11 128844161 128844161 C G ARHGAP32 Missense_Mutation p.E963D 0.48 tolerated_low_confidence(0.14) benign(0.039) TCGA-KD-A5QS-01 11 55999957 55999957 C A OR5T2 Missense_Mutation p.Q235H 0.37 deleterious(0.03) benign(0.208) TCGA-KD-A5QS-01 12 101433740 101433740 A T ANO4 Missense_Mutation p.Y267F 0.23 tolerated(0.33) possibly_damaging(0.772) TCGA-KD-A5QS-01 12 104379391 104379391 G C TDG Missense_Mutation p.K325N 0.53 deleterious(0.02) benign(0.009) TCGA-KD-A5QS-01 12 10569355 10569355 G C KLRC3 Silent p.A166A 0.58 TCGA-KD-A5QS-01 12 10569356 10569356 G C KLRC3 Missense_Mutation p.A166G 0.57 tolerated(0.51) benign(0.001) TCGA-KD-A5QS-01 12 113334650 113334650 C G RPH3A 3'UTR 0.20 TCGA-KD-A5QS-01 12 130184367 130184367 C T TMEM132D Missense_Mutation p.R319H 0.22 tolerated(0.72) benign(0.001) TCGA-KD-A5QS-01 12 21799948 21799956 AGACTGTAA - LDHB Splice_Site p.X44_splice 0.21 TCGA-KD-A5QS-01 12 69969514 69969514 C T FRS2 3'UTR 0.32 TCGA-KD-A5QS-01 13 28875920 28875920 T A FLT1 3'UTR 0.29 TCGA-KD-A5QS-01 13 70371041 70371041 C T KLHL1 Missense_Mutation p.G490R 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-KD-A5QS-01 14 20344583 20344583 C A OR4K2 Missense_Mutation p.P53T 0.08 deleterious(0.03) benign(0.066) TCGA-KD-A5QS-01 15 40623982 40623982 C T C15orf52 3'Flank 0.26 TCGA-KD-A5QS-01 15 74280989 74280989 G A STOML1 Missense_Mutation p.P182L 0.28 tolerated(0.1) benign(0.006) TCGA-KD-A5QS-01 15 78565508 78565508 C G DNAJA4 Missense_Mutation p.L158V 0.71 tolerated(0.13) benign(0.163) TCGA-KD-A5QS-01 16 14680177 14680177 G T PARN Silent p.P320P 0.48 TCGA-KD-A5QS-01 16 49670663 49670663 G C ZNF423 Missense_Mutation p.I800M 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-KD-A5QS-01 16 71712775 71712775 G A PHLPP2 Missense_Mutation p.P384L 0.81 deleterious(0) probably_damaging(0.999) TCGA-KD-A5QS-01 17 25919582 25919582 A T KSR1 Missense_Mutation p.D273V 0.26 deleterious(0) probably_damaging(0.99) TCGA-KD-A5QS-01 17 43474374 43474374 G C ARHGAP27 Missense_Mutation p.P279R 0.27 tolerated(0.39) benign(0.288) TCGA-KD-A5QS-01 17 48548432 48548432 A C ACSF2 Missense_Mutation p.H420P 0.14 deleterious(0.03) benign(0.116) TCGA-KD-A5QS-01 17 49708513 49708523 TTTTGGAAGAA - CA10 3'UTR 0.17 TCGA-KD-A5QS-01 17 56620182 56620182 C G C17orf47 Missense_Mutation p.D456H 0.16 deleterious(0) benign(0.139) TCGA-KD-A5QS-01 17 56620335 56620335 C T C17orf47 Missense_Mutation p.E405K 0.17 tolerated(0.09) possibly_damaging(0.801) TCGA-KD-A5QS-01 17 73998102 73998102 G A CDK3 Splice_Site p.X65_splice 0.24 TCGA-KD-A5QS-01 17 74944891 74944891 C T MGAT5B Nonsense_Mutation p.Q793* 0.51 TCGA-KD-A5QS-01 18 34385446 34385446 T A TPGS2 Silent p.G91G 0.80 TCGA-KD-A5QS-01 19 1005248 1005248 C T GRIN3B Missense_Mutation p.A583V 0.88 tolerated(1) benign(0.017) TCGA-KD-A5QS-01 19 15871188 15871188 C G LLNLR-249E10.1 RNA 0.21 TCGA-KD-A5QS-01 19 35597197 35597197 C T AC020907.1 5'UTR 0.81 TCGA-KD-A5QS-01 19 41019260 41019260 G A SPTBN4 Missense_Mutation p.R855H 0.36 deleterious(0.01) probably_damaging(0.963) TCGA-KD-A5QS-01 19 43032493 43032493 G A CEACAM1 Missense_Mutation p.R12C 0.81 tolerated(0.18) benign(0.004) TCGA-KD-A5QS-01 19 50839923 50839923 C T NAPSB RNA 0.57 TCGA-KD-A5QS-01 19 5918597 5918597 G C RANBP3 Silent p.A461A 0.39 TCGA-KD-A5QS-01 1 147096599 147096599 C A BCL9 Missense_Mutation p.P1374T 0.11 deleterious(0) probably_damaging(0.996) TCGA-KD-A5QS-01 1 151497206 151497206 A G CGN Silent p.V486V 0.13 TCGA-KD-A5QS-01 1 16384740 16384740 C T FAM131C 3'UTR 0.33 TCGA-KD-A5QS-01 1 167095964 167095964 C T DUSP27 Silent p.N532N 0.46 TCGA-KD-A5QS-01 1 174983388 174983388 G C MRPS14 3'UTR 0.30 TCGA-KD-A5QS-01 1 203277846 203277846 C T BTG2 3'UTR 0.65 TCGA-KD-A5QS-01 1 237806668 237806668 C T RYR2 Silent p.S2421S 0.40 TCGA-KD-A5QS-01 1 906235 906235 G C PLEKHN1 Intron 0.56 TCGA-KD-A5QS-01 20 31376688 31376688 T G DNMT3B Missense_Mutation p.L228R 0.18 deleterious(0) possibly_damaging(0.774) TCGA-KD-A5QS-01 20 5294713 5294713 C T PROKR2 Silent p.L101L 0.25 TCGA-KD-A5QS-01 20 6093206 6093206 C T FERMT1 Silent p.K150K 0.29 TCGA-KD-A5QS-01 20 62896684 62896684 C A PCMTD2 Missense_Mutation p.R162S 0.43 deleterious(0) probably_damaging(1) TCGA-KD-A5QS-01 20 746010 746020 AGTAGGTGGGC - SLC52A3 Frame_Shift_Del p.T135Hfs*7 0.32 TCGA-KD-A5QS-01 22 24836570 24836570 G C ADORA2A Missense_Mutation p.G118R 0.30 deleterious(0.04) benign(0.222) TCGA-KD-A5QS-01 2 128065203 128065203 T C MAP3K2 Silent p.R604R 0.50 TCGA-KD-A5QS-01 2 179440976 179440976 C T TTN Missense_Mutation p.A23295T 0.50 TCGA-KD-A5QS-01 2 179664458 179664459 TC - TTN Splice_Site p.X224_splice 0.26 TCGA-KD-A5QS-01 2 197065719 197065719 C A HECW2 3'UTR 0.42 TCGA-KD-A5QS-01 2 198572793 198572793 T C MARS2 3'UTR 0.48 TCGA-KD-A5QS-01 2 228883262 228883262 T C SPHKAP Missense_Mutation p.S770G 0.24 tolerated(0.13) benign(0.284) TCGA-KD-A5QS-01 2 231112669 231112669 T C SP140 Missense_Mutation p.Y261H 0.32 tolerated(0.51) benign(0.001) TCGA-KD-A5QS-01 2 5840025 5840025 T G SOX11 3'UTR 0.77 TCGA-KD-A5QS-01 2 63272396 63272396 T G EHBP1 Intron 0.73 TCGA-KD-A5QS-01 2 63272423 63272423 C T EHBP1 Intron 0.56 TCGA-KD-A5QS-01 2 69723120 69723120 G C AAK1 Missense_Mutation p.P788A 0.57 deleterious(0) probably_damaging(0.98) TCGA-KD-A5QS-01 2 70676757 70676757 A T TGFA 3'UTR 0.54 TCGA-KD-A5QS-01 2 89104342 89104342 A C ANKRD36BP2 RNA 0.30 TCGA-KD-A5QS-01 3 129824474 129824474 G C FAM86HP Intron 0.27 TCGA-KD-A5QS-01 3 141166887 141166909 GAATATTGAATAAGCAATCCTAT - ZBTB38 3'UTR 0.26 TCGA-KD-A5QS-01 3 141167118 141167119 - AAT ZBTB38 3'UTR 0.37 TCGA-KD-A5QS-01 3 141713978 141713978 T C TFDP2 Missense_Mutation p.I64M 0.15 deleterious(0) possibly_damaging(0.717) TCGA-KD-A5QS-01 3 147127375 147127375 G C ZIC1 5'UTR 0.33 TCGA-KD-A5QS-01 3 20153214 20153214 A G KAT2B Silent p.Q326Q 0.22 TCGA-KD-A5QS-01 4 100543870 100543870 C A MTTP Silent p.G850G 0.68 TCGA-KD-A5QS-01 4 103748725 103748748 CTCCGCCCCTCCCCCTCCTCCTGC - UBE2D3 Intron 0.20 TCGA-KD-A5QS-01 4 104061997 104061997 C T CENPE Missense_Mutation p.E1910K 0.46 benign(0.003) TCGA-KD-A5QS-01 4 17812546 17812546 T A NCAPG 5'UTR 0.33 TCGA-KD-A5QS-01 4 47548647 47548647 G A ATP10D Missense_Mutation p.R468K 0.25 deleterious(0.01) benign(0.133) TCGA-KD-A5QS-01 4 62937011 62937011 C T LPHN3 3'UTR 0.21 TCGA-KD-A5QS-01 4 71063870 71063870 G T ODAM Missense_Mutation p.S124I 0.17 deleterious(0.04) benign(0.017) TCGA-KD-A5QS-01 4 71509722 71509722 A - ENAM Frame_Shift_Del p.E862Kfs*7 0.27 TCGA-KD-A5QS-01 5 140167415 140167415 A G PCDHA1 Missense_Mutation p.S514G 0.35 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-KD-A5QS-01 5 74325988 74325988 G A GCNT4 5'UTR 0.06 TCGA-KD-A5QS-01 5 75427805 75427805 A G SV2C Missense_Mutation p.E77G 0.32 deleterious(0) benign(0.285) TCGA-KD-A5QS-01 6 128176258 128176258 A T THEMIS Missense_Mutation p.V56D 0.26 deleterious(0) possibly_damaging(0.684) TCGA-KD-A5QS-01 6 157256633 157256633 C T ARID1B Nonsense_Mutation p.Q654* 0.63 TCGA-KD-A5QS-01 6 28501767 28501767 G - GPX5 Frame_Shift_Del p.G164Afs*11 0.41 TCGA-KD-A5QS-01 6 49802928 49802928 T C CRISP1 3'UTR 0.21 TCGA-KD-A5QS-01 6 84311022 84311023 - T SNAP91 Frame_Shift_Ins p.T431Nfs*6 0.40 TCGA-KD-A5QS-01 7 113518694 113518694 T C PPP1R3A Missense_Mutation p.E818G 0.24 tolerated(0.11) benign(0.029) TCGA-KD-A5QS-01 7 138602589 138602589 C A KIAA1549 Missense_Mutation p.V595F 0.67 tolerated(0.11) benign(0.11) TCGA-KD-A5QS-01 8 104343808 104343808 A G FZD6 3'UTR 0.33 TCGA-KD-A5QS-01 8 110437395 110437395 A T PKHD1L1 Missense_Mutation p.I927F 0.19 deleterious(0.04) benign(0.11) TCGA-KD-A5QS-01 8 41456562 41456562 G A AGPAT6 5'UTR 0.37 TCGA-KD-A5QS-01 8 55372599 55372599 A T SOX17 3'UTR 0.07 TCGA-KD-A5QS-01 9 116854198 116854198 G C KIF12 Missense_Mutation p.S495R 0.18 tolerated_low_confidence(0.1) benign(0.009) TCGA-KD-A5QS-01 9 119124887 119124887 T C PAPPA Missense_Mutation p.V1455A 0.49 tolerated(0.32) benign(0.002) TCGA-KD-A5QS-01 9 136198539 136198539 G A SURF6 3'UTR 0.71 TCGA-KD-A5QS-01 9 136905253 136905253 C T BRD3 Missense_Mutation p.E516K 0.50 tolerated(0.76) possibly_damaging(0.905) TCGA-KD-A5QS-01 9 15465444 15465444 A G PSIP1 3'UTR 0.83 TCGA-KD-A5QS-01 9 71789283 71789283 T C TJP2 5'UTR 0.57 TCGA-KD-A5QS-01 9 75775261 75775261 T A ANXA1 Missense_Mutation p.F118Y 0.30 tolerated(0.76) benign(0.06) TCGA-KD-A5QS-01 9 88967642 88967663 TCTTTATGAAACAGTCGTCTTA - ZCCHC6 Frame_Shift_Del p.V151Afs*2 0.39 TCGA-KD-A5QS-01 9 90535818 90535818 G C SPATA31C1 RNA 0.41 TCGA-KD-A5QS-01 9 99580907 99580907 T A ZNF782 Silent p.I466I 0.41 TCGA-KD-A5QS-01 9 99607255 99607255 T C ZNF782 Missense_Mutation p.E20G 0.39 deleterious(0) probably_damaging(0.961) TCGA-KD-A5QS-01 X 138701798 138701798 G A MCF2 Missense_Mutation p.A312V 0.27 tolerated(0.17) benign(0.14) TCGA-KD-A5QS-01 X 32663086 32663086 G C DMD Missense_Mutation p.H382D 0.44 possibly_damaging(0.774) TCGA-KD-A5QS-01 X 37028953 37028953 C A FAM47C Missense_Mutation p.L824I 0.41 tolerated(0.31) benign(0.396) TCGA-KD-A5QS-01 X 40496309 40496309 C T CXorf38 Missense_Mutation p.E191K 0.24 deleterious(0.01) probably_damaging(0.993) TCGA-KD-A5QS-01 X 49957062 49957062 T A AKAP4 Missense_Mutation p.N768Y 0.16 deleterious(0.02) possibly_damaging(0.761) TCGA-KD-A5QS-01 X 54578772 54578772 C A GNL3L Missense_Mutation p.P410H 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-KD-A5QT-01 10 48371197 48371197 C G ZNF488 Missense_Mutation p.A222G 0.52 deleterious(0.01) benign(0.025) TCGA-KD-A5QT-01 10 90438361 90438361 G C LIPF Missense_Mutation p.D384H 0.46 deleterious(0) probably_damaging(0.997) TCGA-KD-A5QT-01 11 113934249 113934249 C T ZBTB16 Missense_Mutation p.S76L 0.29 deleterious(0) probably_damaging(1) TCGA-KD-A5QT-01 11 2443469 2443469 A T TRPM5 Missense_Mutation p.L67Q 0.50 deleterious(0) probably_damaging(0.973) TCGA-KD-A5QT-01 11 61249257 61249257 C A RP11-286N22.8 Silent p.P144P 0.47 TCGA-KD-A5QT-01 11 73429869 73429869 G A RAB6A Missense_Mutation p.R84C 0.53 deleterious(0) probably_damaging(0.994) TCGA-KD-A5QT-01 11 7669672 7669672 G T PPFIBP2 Silent p.L567L 0.32 TCGA-KD-A5QT-01 11 7669673 7669673 G T PPFIBP2 Nonsense_Mutation p.E568* 0.31 TCGA-KD-A5QT-01 12 104308806 104308806 A T RP11-642P15.1 RNA 0.50 TCGA-KD-A5QT-01 12 122626368 122626368 C T MLXIP 3'UTR 0.44 TCGA-KD-A5QT-01 12 2907947 2907947 C T FKBP4 Missense_Mutation p.R157C 0.47 deleterious(0) possibly_damaging(0.525) TCGA-KD-A5QT-01 12 51125291 51125291 G T DIP2B Missense_Mutation p.G1261C 0.54 deleterious(0) probably_damaging(0.99) TCGA-KD-A5QT-01 12 88566467 88566467 A T TMTC3 Missense_Mutation p.S382C 0.49 deleterious(0) probably_damaging(0.999) TCGA-KD-A5QT-01 13 101717809 101717809 G A NALCN Silent p.Y1517Y 0.47 TCGA-KD-A5QT-01 13 113170867 113170867 C T TUBGCP3 Missense_Mutation p.S658N 0.47 tolerated(0.21) benign(0.014) TCGA-KD-A5QT-01 13 29674957 29674957 C T MTUS2 Missense_Mutation p.P842S 0.42 deleterious(0.01) possibly_damaging(0.877) TCGA-KD-A5QT-01 13 29675028 29675028 C G MTUS2 Silent p.V865V 0.40 TCGA-KD-A5QT-01 13 29675048 29675048 C T MTUS2 Missense_Mutation p.S872L 0.40 deleterious(0) possibly_damaging(0.656) TCGA-KD-A5QT-01 15 79185926 79185926 G T MORF4L1 Missense_Mutation p.D235Y 0.50 deleterious(0) probably_damaging(0.944) TCGA-KD-A5QT-01 16 2107142 2107143 AG - TSC2 Frame_Shift_Del p.S271Rfs*66 0.29 TCGA-KD-A5QT-01 17 36482852 36482852 C A GPR179 Silent p.L2200L 0.08 TCGA-KD-A5QT-01 17 7578395 7578395 G T TP53 Missense_Mutation p.H179N 0.85 deleterious(0) probably_damaging(1) TCGA-KD-A5QT-01 1 216246484 216246484 C T USH2A Missense_Mutation p.G1911R 0.50 probably_damaging(1) TCGA-KD-A5QT-01 1 229773350 229773352 TCC - URB2 In_Frame_Del p.L998del 0.51 TCGA-KD-A5QT-01 1 29475424 29475424 C T SRSF4 Missense_Mutation p.R328H 0.48 tolerated_low_confidence(0.13) unknown(0) TCGA-KD-A5QT-01 1 43748630 43748630 G T C1orf210 Silent p.L56L 0.52 TCGA-KD-A5QT-01 22 39262106 39262106 A T CBX6 3'UTR 0.89 TCGA-KD-A5QT-01 2 141202013 141202013 G T LRP1B Missense_Mutation p.H3394N 0.90 benign(0.322) TCGA-KD-A5QT-01 2 220147939 220147939 G T DNAJB2 Missense_Mutation p.R177L 0.62 deleterious(0.03) benign(0.113) TCGA-KD-A5QT-01 3 151598364 151598364 C G SUCNR1 Missense_Mutation p.C11W 0.08 deleterious(0) probably_damaging(0.923) TCGA-KD-A5QT-01 3 184099338 184099339 - C CHRD Frame_Shift_Ins p.E148Gfs*6 0.48 TCGA-KD-A5QT-01 3 47164759 47164759 C T SETD2 Missense_Mutation p.R456Q 0.33 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-KD-A5QT-01 4 155298547 155298547 G A DCHS2 Missense_Mutation p.S95F 0.49 tolerated(0.36) benign(0.011) TCGA-KD-A5QT-01 4 17805189 17805189 A G DCAF16 Silent p.T192T 0.17 TCGA-KD-A5QT-01 4 3475303 3475303 T A DOK7 Missense_Mutation p.F91I 0.49 deleterious(0) benign(0.313) TCGA-KD-A5QT-01 5 173534646 173534646 C T NSG2 3'UTR 0.50 TCGA-KD-A5QT-01 6 15496913 15496913 A G JARID2 Missense_Mutation p.K486R 0.92 tolerated_low_confidence(0.2) benign(0.004) TCGA-KD-A5QT-01 6 170591783 170591783 G A DLL1 3'UTR 0.22 TCGA-KD-A5QT-01 9 140508122 140508122 G A ARRDC1 Silent p.R112R 0.49 TCGA-KD-A5QT-01 9 20622417 20622417 G A MLLT3 5'UTR 0.46 TCGA-KD-A5QT-01 X 128894541 128894541 T G XPNPEP2 Missense_Mutation p.F494L 0.45 deleterious(0.02) probably_damaging(0.997) TCGA-KD-A5QT-01 X 133930160 133930160 C A FAM122B Missense_Mutation p.A26S 0.49 deleterious(0.03) probably_damaging(0.999) TCGA-KD-A5QT-01 X 152981004 152981004 G A BCAP31 Silent p.L179L 0.28 TCGA-KD-A5QT-01 X 153660771 153660771 G T ATP6AP1 Missense_Mutation p.A175S 0.42 tolerated(0.47) benign(0.406) TCGA-KD-A5QT-01 X 55051216 55051216 C G ALAS2 Missense_Mutation p.G80A 0.25 tolerated(0.37) benign(0.297) TCGA-KD-A5QT-01 X 73812716 73812716 C A RLIM Missense_Mutation p.R145L 0.57 tolerated(0.71) unknown(0) TCGA-KD-A5QU-01 10 102684152 102684152 C T FAM178A Missense_Mutation p.T465M 0.45 tolerated(0.29) benign(0) TCGA-KD-A5QU-01 10 24762620 24762620 A T KIAA1217 Missense_Mutation p.N437I 1.00 deleterious(0.01) possibly_damaging(0.543) TCGA-KD-A5QU-01 11 117329566 117329566 C T DSCAML1 Missense_Mutation p.E1218K 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-KD-A5QU-01 11 66045946 66045946 G T CNIH2 Missense_Mutation p.A7S 0.27 deleterious(0.01) possibly_damaging(0.844) TCGA-KD-A5QU-01 11 66393948 66393948 C A RBM14 Missense_Mutation p.R607S 0.19 deleterious(0) unknown(0) TCGA-KD-A5QU-01 11 6789507 6789507 T C OR2AG2 Missense_Mutation p.M228V 0.57 deleterious(0) benign(0.02) TCGA-KD-A5QU-01 12 109948259 109948259 C T UBE3B Nonsense_Mutation p.R618* 0.26 TCGA-KD-A5QU-01 12 16185531 16185531 G A DERA Silent p.P231P 0.85 TCGA-KD-A5QU-01 12 48919809 48919809 A G OR8S1 Missense_Mutation p.Y132C 0.48 deleterious(0) probably_damaging(1) TCGA-KD-A5QU-01 12 56143846 56143846 G A GDF11 3'UTR 0.57 TCGA-KD-A5QU-01 12 6729465 6729465 G T LPAR5 Missense_Mutation p.A317D 0.43 tolerated(0.39) benign(0.001) TCGA-KD-A5QU-01 13 24465804 24465804 G A C1QTNF9B Missense_Mutation p.T209M 0.08 deleterious(0) probably_damaging(0.932) TCGA-KD-A5QU-01 13 24895530 24895530 C T AL359736.1 Missense_Mutation p.V13M 0.30 deleterious(0) probably_damaging(0.987) TCGA-KD-A5QU-01 13 29608075 29608075 T A MTUS2 Nonsense_Mutation p.Y763* 0.84 TCGA-KD-A5QU-01 13 32976895 32976895 C G N4BP2L1 3'UTR 0.92 TCGA-KD-A5QU-01 13 45517719 45517719 G A NUFIP1 Missense_Mutation p.A410V 0.83 tolerated(0.34) benign(0.003) TCGA-KD-A5QU-01 13 49054629 49054629 A C RB1 3'UTR 0.95 TCGA-KD-A5QU-01 14 60938375 60938375 G A C14orf39 Missense_Mutation p.R136C 0.22 tolerated(0.16) benign(0) TCGA-KD-A5QU-01 15 39546565 39546565 C G C15orf54 3'UTR 0.46 TCGA-KD-A5QU-01 15 62986578 62986578 G A TLN2 Missense_Mutation p.V427I 0.39 deleterious(0.01) possibly_damaging(0.504) TCGA-KD-A5QU-01 15 75557687 75557687 A T GOLGA6C Silent p.L227L 0.56 TCGA-KD-A5QU-01 17 1838415 1838415 G A RTN4RL1 3'UTR 0.24 TCGA-KD-A5QU-01 17 60472473 60472473 A G EFCAB3 Missense_Mutation p.I190V 0.65 deleterious(0.01) possibly_damaging(0.539) TCGA-KD-A5QU-01 17 72285741 72285741 A G DNAI2 Missense_Mutation p.Q159R 0.32 tolerated(0.11) benign(0.002) TCGA-KD-A5QU-01 17 73663400 73663400 A T SAP30BP 5'UTR 0.61 TCGA-KD-A5QU-01 17 74003381 74003381 C T EVPL Missense_Mutation p.A1969T 0.16 deleterious(0.01) probably_damaging(0.938) TCGA-KD-A5QU-01 17 7592062 7592062 G A WRAP53 Missense_Mutation p.M32I 0.73 tolerated_low_confidence(0.35) benign(0.006) TCGA-KD-A5QU-01 17 7724577 7724577 C T DNAH2 Missense_Mutation p.L3678F 0.23 probably_damaging(0.999) TCGA-KD-A5QU-01 17 79163639 79163639 G A AZI1 Missense_Mutation p.A1058V 0.69 deleterious(0) benign(0.41) TCGA-KD-A5QU-01 19 16146410 16146410 T C LINC00905 RNA 0.05 TCGA-KD-A5QU-01 19 23927876 23927876 C T ZNF681 Missense_Mutation p.G159E 0.43 deleterious(0.01) probably_damaging(0.972) TCGA-KD-A5QU-01 19 43375964 43375964 G T PSG1 Missense_Mutation p.P222T 0.24 deleterious(0.05) possibly_damaging(0.475) TCGA-KD-A5QU-01 19 45910444 45910444 G A CD3EAP Missense_Mutation p.D39N 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-KD-A5QU-01 19 50333767 50333767 G A MED25 Splice_Site p.X274_splice 0.08 TCGA-KD-A5QU-01 19 51525868 51525868 T A KLK11 Missense_Mutation p.K261M 0.26 deleterious(0) probably_damaging(0.994) TCGA-KD-A5QU-01 19 747782 747782 C G PALM 3'UTR 0.17 TCGA-KD-A5QU-01 1 110656199 110656199 G A UBL4B 3'UTR 0.44 TCGA-KD-A5QU-01 1 145368448 145368448 G A NBPF10 Missense_Mutation p.G3476S 0.04 benign(0.006) TCGA-KD-A5QU-01 1 152382060 152382060 G A CRNN 3'UTR 0.25 TCGA-KD-A5QU-01 1 155720155 155720155 G A GON4L 3'UTR 0.29 TCGA-KD-A5QU-01 1 17265593 17265593 G A CROCC Missense_Mutation p.A522T 0.26 benign(0.065) TCGA-KD-A5QU-01 1 209878266 209878266 C T HSD11B1 5'UTR 0.24 TCGA-KD-A5QU-01 1 229779403 229779403 G C URB2 Missense_Mutation p.G1253A 0.14 deleterious(0) probably_damaging(0.923) TCGA-KD-A5QU-01 1 43738733 43738733 G A TMEM125 Missense_Mutation p.A114T 0.14 tolerated(0.4) probably_damaging(0.996) TCGA-KD-A5QU-01 1 61921249 61921249 G T NFIA 3'Flank 0.50 TCGA-KD-A5QU-01 1 63872024 63872024 T C ALG6 Missense_Mutation p.V128A 0.09 deleterious(0) benign(0.38) TCGA-KD-A5QU-01 1 75609535 75609535 G T LHX8 Missense_Mutation p.G206W 0.16 deleterious(0) possibly_damaging(0.697) TCGA-KD-A5QU-01 1 79102854 79102855 AG T IFI44L Frame_Shift_Del p.K338Nfs*2 0.30 TCGA-KD-A5QU-01 1 92187646 92187646 T G TGFBR3 Missense_Mutation p.K314T 0.09 tolerated(0.23) benign(0.12) TCGA-KD-A5QU-01 22 17119477 17119477 G A TPTEP1 RNA 0.08 TCGA-KD-A5QU-01 22 25124262 25124262 G T PIWIL3 Missense_Mutation p.P605Q 0.18 deleterious(0) probably_damaging(0.995) TCGA-KD-A5QU-01 22 26701984 26701984 G A SEZ6L Missense_Mutation p.R463H 0.30 deleterious(0.02) benign(0.258) TCGA-KD-A5QU-01 2 100055179 100055179 C T REV1 Missense_Mutation p.C366Y 0.10 deleterious(0.02) benign(0.379) TCGA-KD-A5QU-01 2 103148832 103148832 C T SLC9A4 Silent p.S694S 0.18 TCGA-KD-A5QU-01 2 131175634 131175634 A T FAR2P2 RNA 0.28 TCGA-KD-A5QU-01 2 152727108 152727108 A C CACNB4 Silent p.P212P 0.45 TCGA-KD-A5QU-01 2 167055312 167055312 G C SCN9A Missense_Mutation p.T1935R 0.06 deleterious(0.02) benign(0.329) TCGA-KD-A5QU-01 2 212566852 212566852 G T ERBB4 Silent p.T443T 0.25 TCGA-KD-A5QU-01 2 27801965 27801965 A C C2orf16 Silent p.L842L 0.28 TCGA-KD-A5QU-01 2 70674628 70674628 T G TGFA 3'UTR 0.23 TCGA-KD-A5QU-01 2 70674682 70674682 A C TGFA 3'UTR 0.12 TCGA-KD-A5QU-01 3 112714066 112714066 G C GTPBP8 Missense_Mutation p.E174Q 0.09 tolerated(0.24) benign(0.1) TCGA-KD-A5QU-01 3 122436990 122436990 G C PARP14 Missense_Mutation p.G1358A 0.05 tolerated(0.12) benign(0.284) TCGA-KD-A5QU-01 3 124456888 124456888 C T UMPS Silent p.L262L 0.19 TCGA-KD-A5QU-01 3 125836884 125836884 G T ALDH1L1 Missense_Mutation p.T659K 0.21 deleterious(0) possibly_damaging(0.879) TCGA-KD-A5QU-01 3 126219578 126219578 C A UROC1 Missense_Mutation p.A429S 0.32 tolerated(0.27) benign(0.04) TCGA-KD-A5QU-01 3 133342943 133342943 C T TOPBP1 Missense_Mutation p.V961I 0.38 deleterious(0.04) benign(0.077) TCGA-KD-A5QU-01 3 196751255 196751255 G A MFI2 Missense_Mutation p.R136C 0.23 deleterious(0) probably_damaging(0.997) TCGA-KD-A5QU-01 3 63600972 63600972 T C SYNPR Missense_Mutation p.S225P 0.10 deleterious(0.05) benign(0.176) TCGA-KD-A5QU-01 4 100341929 100341929 C T ADH7 Missense_Mutation p.V216I 0.21 deleterious(0.01) benign(0.044) TCGA-KD-A5QU-01 4 84350703 84350703 G A HELQ Missense_Mutation p.T831I 0.39 deleterious(0) probably_damaging(0.98) TCGA-KD-A5QU-01 5 137476530 137476530 C A BRD8 Missense_Mutation p.G1160V 0.44 deleterious(0) possibly_damaging(0.558) TCGA-KD-A5QU-01 5 13766211 13766211 G A DNAH5 Silent p.C3325C 0.28 TCGA-KD-A5QU-01 5 141025697 141025697 T C FCHSD1 Missense_Mutation p.E369G 0.24 deleterious(0) possibly_damaging(0.786) TCGA-KD-A5QU-01 5 156769087 156769087 T C FNDC9 3'UTR 0.60 TCGA-KD-A5QU-01 5 169310676 169310676 G C FAM196B Missense_Mutation p.P76R 0.41 deleterious(0.02) possibly_damaging(0.549) TCGA-KD-A5QU-01 6 70916680 70916680 C T COL19A1 Missense_Mutation p.S1100L 0.47 tolerated(0.08) benign(0.118) TCGA-KD-A5QU-01 6 73933545 73933545 G C KHDC1L Missense_Mutation p.R105G 0.07 tolerated(0.11) benign(0.204) TCGA-KD-A5QU-01 6 93964495 93964495 C A EPHA7 Missense_Mutation p.R801M 0.41 deleterious(0) probably_damaging(0.983) TCGA-KD-A5QU-01 7 113517565 113517565 T C PPP1R3A 3'UTR 0.17 TCGA-KD-A5QU-01 7 128619071 128619071 C T TNPO3 Missense_Mutation p.G676E 0.43 tolerated(0.64) benign(0.017) TCGA-KD-A5QU-01 7 2646853 2646853 C G IQCE Missense_Mutation p.A654G 0.27 tolerated(0.11) probably_damaging(0.968) TCGA-KD-A5QU-01 9 110249601 110249601 C T KLF4 Silent p.P358P 0.41 TCGA-KD-A5QU-01 9 135140048 135140048 C G SETX Missense_Mutation p.D2538H 0.13 deleterious(0) probably_damaging(1) TCGA-KD-A5QU-01 9 139347902 139347902 A C SEC16A Missense_Mutation p.F2046C 0.12 deleterious(0.02) probably_damaging(0.946) TCGA-KD-A5QU-01 9 432324 432324 G T DOCK8 Missense_Mutation p.Q1595H 0.22 deleterious(0) probably_damaging(0.998) TCGA-KD-A5QU-01 9 97088084 97088084 G A NUTM2F Missense_Mutation p.P50L 0.34 deleterious(0.04) benign(0.333) TCGA-KD-A5QU-01 X 154020552 154020552 C T MPP1 Silent p.S37S 0.50 TCGA-KD-A5QU-01 X 51150794 51150794 G T CXorf67 Missense_Mutation p.G309V 0.16 deleterious(0.02) probably_damaging(0.948) TCGA-KD-A5QU-01 X 51150803 51150803 G C CXorf67 Missense_Mutation p.R312P 0.17 tolerated(0.24) possibly_damaging(0.491) TCGA-KD-A5QU-01 X 76912104 76912104 G C ATRX Nonsense_Mutation p.S1387* 0.48 TCGA-KF-A41W-01 10 134059421 134059421 T A STK32C Nonsense_Mutation p.K101* 0.59 TCGA-KF-A41W-01 11 115045747 115045747 G A CADM1 3'UTR 0.32 TCGA-KF-A41W-01 11 115045748 115045748 A C CADM1 3'UTR 0.32 TCGA-KF-A41W-01 11 4945070 4945070 C T OR51G1 Missense_Mutation p.R167H 0.26 deleterious(0.05) benign(0.077) TCGA-KF-A41W-01 11 5012728 5012728 T C MMP26 Splice_Site p.X199_splice 0.18 TCGA-KF-A41W-01 11 6411691 6411691 C A SMPD1 5'UTR 0.33 TCGA-KF-A41W-01 11 65789005 65789005 C A CATSPER1 Silent p.L551L 0.47 TCGA-KF-A41W-01 12 18715824 18715824 A T PIK3C2G Missense_Mutation p.N1219Y 0.43 tolerated(1) benign(0.024) TCGA-KF-A41W-01 13 113863000 113863000 C T PCID2 5'Flank 0.99 TCGA-KF-A41W-01 13 92345903 92345903 G A GPC5 Missense_Mutation p.G263D 0.61 deleterious(0.03) probably_damaging(0.973) TCGA-KF-A41W-01 14 20612593 20612593 G T OR4N5 Missense_Mutation p.K233N 0.25 deleterious(0.02) probably_damaging(1) TCGA-KF-A41W-01 14 52156464 52156465 - G FRMD6 5'UTR 0.32 TCGA-KF-A41W-01 14 94066938 94066938 C T UNC79 Silent p.F955F 0.28 TCGA-KF-A41W-01 14 99183433 99183433 G T C14orf177 Missense_Mutation p.G67V 0.71 deleterious_low_confidence(0) benign(0.069) TCGA-KF-A41W-01 15 50835876 50835876 T G USP50 Silent p.P121P 0.59 TCGA-KF-A41W-01 15 89848834 89848834 A T FANCI Splice_Site p.X1086_splice 0.07 TCGA-KF-A41W-01 16 4033313 4033313 G A ADCY9 Silent p.T813T 0.07 TCGA-KF-A41W-01 16 46696380 46696380 A C VPS35 Nonsense_Mutation p.Y614* 0.35 TCGA-KF-A41W-01 16 57017287 57017287 C T CETP Silent p.L457L 0.63 TCGA-KF-A41W-01 16 816740 816740 G A MSLN Missense_Mutation p.A443T 0.28 tolerated(0.46) benign(0.01) TCGA-KF-A41W-01 17 21911364 21911364 T A RP11-744K17.9 RNA 0.50 TCGA-KF-A41W-01 17 6905637 6905637 G C AC027763.2 Intron 0.56 TCGA-KF-A41W-01 17 6905806 6905806 G C AC027763.2 Intron 0.53 TCGA-KF-A41W-01 17 6905883 6905883 G A AC027763.2 Intron 0.67 TCGA-KF-A41W-01 17 7578266 7578266 T A TP53 Missense_Mutation p.I195F 0.42 deleterious(0) probably_damaging(1) TCGA-KF-A41W-01 18 29122725 29122725 A C DSG2 Silent p.A748A 0.43 TCGA-KF-A41W-01 18 70415343 70415343 C A NETO1 3'UTR 0.11 TCGA-KF-A41W-01 19 11094868 11094868 C T SMARCA4 Missense_Mutation p.P14L 0.49 unknown(0) TCGA-KF-A41W-01 19 16280488 16280488 C T CIB3 Missense_Mutation p.D51N 0.47 tolerated(0.91) benign(0.001) TCGA-KF-A41W-01 19 49253749 49253749 C T FUT1 Missense_Mutation p.G264S 0.36 tolerated(0.06) probably_damaging(0.962) TCGA-KF-A41W-01 19 49713967 49713967 G A TRPM4 Missense_Mutation p.R1110Q 0.36 tolerated(0.32) benign(0.417) TCGA-KF-A41W-01 19 49999638 49999638 C T RPS11 5'UTR 0.62 TCGA-KF-A41W-01 19 58928651 58928651 G A ZNF584 Missense_Mutation p.A256T 0.56 tolerated(0.27) probably_damaging(0.999) TCGA-KF-A41W-01 1 110085579 110085579 G T GPR61 5'UTR 0.28 TCGA-KF-A41W-01 1 115487553 115487553 C T SYCP1 Nonsense_Mutation p.R702* 0.17 TCGA-KF-A41W-01 1 145561425 145561425 G A ANKRD35 Silent p.Q371Q 0.24 TCGA-KF-A41W-01 1 158585053 158585053 C T SPTA1 Silent p.Q2247Q 0.29 TCGA-KF-A41W-01 1 190234179 190234179 T A BRINP3 Missense_Mutation p.E145V 0.53 deleterious(0) possibly_damaging(0.716) TCGA-KF-A41W-01 1 220193405 220193405 C A EPRS Missense_Mutation p.R425L 0.09 deleterious(0) probably_damaging(0.995) TCGA-KF-A41W-01 1 2235296 2235296 G C SKI Missense_Mutation p.S410T 0.40 tolerated(0.89) benign(0.052) TCGA-KF-A41W-01 1 2235884 2235884 G C SKI Missense_Mutation p.E543Q 0.36 tolerated(0.15) probably_damaging(0.993) TCGA-KF-A41W-01 1 241842864 241842864 T G WDR64 Missense_Mutation p.I187M 0.07 deleterious(0) possibly_damaging(0.824) TCGA-KF-A41W-01 1 2939425 2939425 C A ACTRT2 3'UTR 0.23 TCGA-KF-A41W-01 1 93989880 93989880 T C FNBP1L Silent p.N135N 0.36 TCGA-KF-A41W-01 20 19981949 19981950 - AGG RIN2 3'UTR 0.43 TCGA-KF-A41W-01 20 21492076 21492076 A T NKX2-2 3'UTR 0.43 TCGA-KF-A41W-01 20 31647706 31647706 T G BPIFB3 Silent p.G132G 0.28 TCGA-KF-A41W-01 20 33851607 33851607 C T MMP24 Silent p.F277F 0.40 TCGA-KF-A41W-01 2 11284204 11284204 G A C2orf50 Silent p.K152K 0.20 TCGA-KF-A41W-01 2 132277977 132277977 G A AC093838.4 RNA 0.18 TCGA-KF-A41W-01 2 210837868 210837868 A G UNC80 Missense_Mutation p.S2755G 0.16 probably_damaging(0.961) TCGA-KF-A41W-01 2 27121387 27121387 G T DPYSL5 Missense_Mutation p.S7I 0.19 deleterious(0.01) benign(0.015) TCGA-KF-A41W-01 2 84686440 84686440 G T SUCLG1 5'UTR 0.39 TCGA-KF-A41W-01 2 88327723 88327723 A - KRCC1 Frame_Shift_Del p.F120Lfs*13 0.11 TCGA-KF-A41W-01 3 48697124 48697124 G T CELSR3 Missense_Mutation p.Q982K 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-KF-A41W-01 3 54952665 54952665 C A LRTM1 Missense_Mutation p.A287S 0.25 deleterious(0.01) probably_damaging(0.929) TCGA-KF-A41W-01 4 100570993 100570993 G A RP11-766F14.2 Missense_Mutation p.P1605S 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.606) TCGA-KF-A41W-01 4 155507241 155507241 T A FGA Missense_Mutation p.E447V 0.17 deleterious(0.02) probably_damaging(0.98) TCGA-KF-A41W-01 4 77288467 77288467 T A CCDC158 Missense_Mutation p.M604L 0.31 tolerated(1) benign(0) TCGA-KF-A41W-01 5 138209312 138209313 CA - LRRTM2 Frame_Shift_Del p.W313Gfs*30 0.38 TCGA-KF-A41W-01 5 26988306 26988306 A C CDH9 Silent p.G45G 0.60 TCGA-KF-A41W-01 5 31424571 31424571 C T DROSHA Missense_Mutation p.R1075H 0.12 tolerated(0.65) benign(0.003) TCGA-KF-A41W-01 5 45259949 45259949 A G HCN1 3'UTR 0.16 TCGA-KF-A41W-01 5 96360291 96360291 C G LNPEP Missense_Mutation p.F876L 0.20 tolerated(0.05) benign(0.12) TCGA-KF-A41W-01 6 126136412 126136412 G A NCOA7 Intron 0.37 TCGA-KF-A41W-01 6 146625761 146625761 A G GRM1 Missense_Mutation p.D322G 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-KF-A41W-01 6 35945038 35945038 G A SLC26A8 Silent p.L372L 0.42 TCGA-KF-A41W-01 6 40359762 40359762 A G LRFN2 Silent p.L764L 0.14 TCGA-KF-A41W-01 6 65098712 65098712 G A EYS Silent p.N1983N 0.28 TCGA-KF-A41W-01 7 100226977 100226977 C G TFR2 Missense_Mutation p.G430A 0.70 deleterious(0) probably_damaging(1) TCGA-KF-A41W-01 8 12044046 12044046 A T FAM86B1 Missense_Mutation p.F152Y 0.18 deleterious(0) possibly_damaging(0.807) TCGA-KF-A41W-01 8 13162758 13162758 G A DLC1 Intron 0.14 TCGA-KF-A41W-01 8 17612997 17612997 G T MTUS1 Missense_Mutation p.A107E 0.21 deleterious(0.04) benign(0.066) TCGA-KF-A41W-01 8 196125 196125 A G ZNF596 Silent p.K426K 0.09 TCGA-KF-A41W-01 8 27927797 27927797 G A NUGGC Silent p.P40P 0.40 TCGA-KF-A41W-01 8 30701742 30701742 C A TEX15 Missense_Mutation p.V1598L 0.46 tolerated(0.29) benign(0.013) TCGA-KF-A41W-01 9 125585434 125585434 A C PDCL Missense_Mutation p.L72W 0.10 deleterious(0) probably_damaging(1) TCGA-KF-A41W-01 9 311953 311953 G A DOCK8 Splice_Site p.X177_splice 0.23 TCGA-KF-A41W-01 X 129147377 129147377 C T BCORL1 Missense_Mutation p.S210L 0.46 unknown(0) TCGA-KF-A41W-01 X 64722228 64722228 T A ZC3H12B Silent p.G550G 0.49 TCGA-LI-A67I-01 10 129231688 129231688 G T DOCK1 Missense_Mutation p.D1665Y 0.83 deleterious(0.01) probably_damaging(0.974) TCGA-LI-A67I-01 10 81273634 81273634 C G EIF5AL1 3'UTR 0.41 TCGA-LI-A67I-01 10 89685305 89685305 T A PTEN Missense_Mutation p.I67K 0.78 deleterious(0) probably_damaging(0.996) TCGA-LI-A67I-01 11 62294150 62294150 G A AHNAK Missense_Mutation p.S2580F 0.10 probably_damaging(0.999) TCGA-LI-A67I-01 11 64877351 64877351 G A VPS51 Missense_Mutation p.V612I 0.58 deleterious(0.01) possibly_damaging(0.896) TCGA-LI-A67I-01 11 6643466 6643466 C G DCHS1 Silent p.L3147L 0.79 TCGA-LI-A67I-01 11 6653374 6653374 G A DCHS1 Silent p.S1123S 0.82 TCGA-LI-A67I-01 13 111947521 111947521 A G ARHGEF7 3'UTR 0.81 TCGA-LI-A67I-01 13 111955453 111955453 A G ARHGEF7 Missense_Mutation p.N645S 0.80 tolerated(0.18) benign(0.083) TCGA-LI-A67I-01 13 49039415 49039415 T - RB1 Frame_Shift_Del p.G801Efs*9 0.39 TCGA-LI-A67I-01 14 101348435 101348435 G A RTL1 Silent p.T897T 0.30 TCGA-LI-A67I-01 15 48703246 48703277 AGTCTTTGTCATATTTGTCTTCTAGTTGGTTA - FBN1 Frame_Shift_Del p.N2843Pfs*4 0.38 TCGA-LI-A67I-01 15 50528415 50528415 G A SLC27A2 3'UTR 0.31 TCGA-LI-A67I-01 16 2024831 2024831 C G TBL3 Silent p.G149G 0.31 TCGA-LI-A67I-01 16 57506589 57506589 G A DOK4 3'UTR 0.23 TCGA-LI-A67I-01 16 824427 824427 G A MSLNL Missense_Mutation p.A605V 0.56 benign(0.074) TCGA-LI-A67I-01 17 12045079 12045079 C T MAP2K4 3'UTR 0.56 TCGA-LI-A67I-01 17 40725008 40725008 T G PSMC3IP Missense_Mutation p.N211T 0.34 tolerated(0.09) benign(0.082) TCGA-LI-A67I-01 17 43196223 43196223 C T PLCD3 Missense_Mutation p.R291H 0.23 tolerated(0.84) benign(0.002) TCGA-LI-A67I-01 17 48760996 48760996 G A ABCC3 Missense_Mutation p.R1278H 0.60 tolerated(0.24) possibly_damaging(0.88) TCGA-LI-A67I-01 17 72346862 72346862 T A KIF19 Missense_Mutation p.S469T 0.43 tolerated(0.77) benign(0.002) TCGA-LI-A67I-01 17 7578213 7578213 A - TP53 Frame_Shift_Del p.R213Dfs*34 0.45 TCGA-LI-A67I-01 18 14105364 14105364 G A ZNF519 Missense_Mutation p.T392I 0.50 tolerated(0.08) benign(0.087) TCGA-LI-A67I-01 18 14179480 14179480 C G ANKRD20A5P RNA 0.28 TCGA-LI-A67I-01 19 10677946 10677946 C A CDKN2D Missense_Mutation p.G97W 0.27 deleterious(0) probably_damaging(0.993) TCGA-LI-A67I-01 19 11537380 11537380 G A CCDC151 Silent p.L242L 0.38 TCGA-LI-A67I-01 19 5205818 5205818 C T PTPRS 3'UTR 0.60 TCGA-LI-A67I-01 19 56936165 56936165 G A ZNF583 3'UTR 0.79 TCGA-LI-A67I-01 19 9076876 9076876 C T MUC16 Missense_Mutation p.E3524K 0.41 unknown(0) TCGA-LI-A67I-01 1 159846347 159846347 G A CCDC19 Missense_Mutation p.R451W 0.75 deleterious(0) probably_damaging(1) TCGA-LI-A67I-01 1 23759669 23759669 C T ASAP3 Missense_Mutation p.A742T 0.08 tolerated(0.38) benign(0.008) TCGA-LI-A67I-01 1 54060320 54060320 C T GLIS1 Missense_Mutation p.V86I 0.46 tolerated(1) benign(0.001) TCGA-LI-A67I-01 1 70697708 70697708 T - SRSF11 Intron 0.23 TCGA-LI-A67I-01 20 30584527 30584527 G T XKR7 Missense_Mutation p.W336L 0.79 deleterious(0) probably_damaging(0.99) TCGA-LI-A67I-01 21 30505648 30505648 G A MAP3K7CL Intron 0.43 TCGA-LI-A67I-01 22 21538113 21538113 C T FAM230B RNA 0.04 TCGA-LI-A67I-01 22 21538140 21538140 C T FAM230B RNA 0.14 TCGA-LI-A67I-01 2 220047392 220047392 C T FAM134A 3'UTR 0.75 TCGA-LI-A67I-01 2 48734478 48734478 C T PPP1R21 Missense_Mutation p.S680F 0.28 deleterious(0.01) probably_damaging(0.974) TCGA-LI-A67I-01 2 48734480 48734480 C T PPP1R21 Nonsense_Mutation p.Q681* 0.28 TCGA-LI-A67I-01 2 60688425 60688425 C T BCL11A Missense_Mutation p.R541H 0.61 tolerated_low_confidence(0.54) possibly_damaging(0.522) TCGA-LI-A67I-01 2 95540568 95540568 G A TEKT4 Missense_Mutation p.C254Y 0.75 tolerated(1) benign(0.001) TCGA-LI-A67I-01 3 149093526 149093526 G T TM4SF1 Missense_Mutation p.L70M 0.40 deleterious(0.03) possibly_damaging(0.725) TCGA-LI-A67I-01 3 38592282 38592282 C A SCN5A Missense_Mutation p.V1861F 0.42 tolerated(0.05) probably_damaging(0.999) TCGA-LI-A67I-01 3 49456732 49456732 G A AMT Silent p.R219R 0.17 TCGA-LI-A67I-01 4 113189426 113189439 GGCTGGAGTGGGAA - AP1AR Frame_Shift_Del p.G257Efs*2 0.72 TCGA-LI-A67I-01 4 140641346 140641346 C T MAML3 Missense_Mutation p.A850T 0.81 benign(0.009) TCGA-LI-A67I-01 4 76570077 76570077 G T G3BP2 3'UTR 0.48 TCGA-LI-A67I-01 4 89618167 89618167 G A NAP1L5 3'UTR 0.84 TCGA-LI-A67I-01 5 140801354 140801354 C T PCDHGA11 Missense_Mutation p.T187M 0.28 tolerated_low_confidence(0.07) benign(0.056) TCGA-LI-A67I-01 5 141335172 141335172 C T PCDH12 Missense_Mutation p.A749T 0.12 deleterious(0) possibly_damaging(0.821) TCGA-LI-A67I-01 5 176938889 176938889 C T DDX41 Missense_Mutation p.R591Q 0.48 deleterious(0.02) possibly_damaging(0.559) TCGA-LI-A67I-01 5 52177853 52177853 G T ITGA1 Missense_Mutation p.R258I 0.37 deleterious(0) probably_damaging(0.998) TCGA-LI-A67I-01 6 109996917 109996917 G A AK9 Missense_Mutation p.P11L 0.39 deleterious(0) possibly_damaging(0.694) TCGA-LI-A67I-01 6 24502780 24502780 C T ALDH5A1 Silent p.Y128Y 0.59 TCGA-LI-A67I-01 6 31599565 31599565 C T PRRC2A Missense_Mutation p.R1039W 0.25 unknown(0) TCGA-LI-A67I-01 6 43275460 43275460 C T CRIP3 Missense_Mutation p.G73D 0.29 tolerated(0.06) benign(0.253) TCGA-LI-A67I-01 6 52993032 52993032 A G GCM1 Missense_Mutation p.M428T 0.42 tolerated(0.15) benign(0.01) TCGA-LI-A67I-01 8 105235995 105235995 T A RIMS2 Intron 0.38 TCGA-LI-A67I-01 8 39776355 39776355 G C IDO1 Missense_Mutation p.V109L 0.27 tolerated(0.39) benign(0.155) TCGA-LI-A67I-01 8 55372529 55372529 T C SOX17 Missense_Mutation p.Y407H 0.29 deleterious(0) probably_damaging(0.992) TCGA-LI-A67I-01 9 37744414 37744414 C A FRMPD1 Silent p.P795P 0.39 TCGA-LI-A67I-01 9 93624510 93624510 G A SYK Missense_Mutation p.G201S 0.50 deleterious(0.05) benign(0.318) TCGA-LI-A67I-01 X 100098520 100098520 G T NOX1 3'UTR 0.38 TCGA-LI-A67I-01 X 135291453 135291453 C A FHL1 Missense_Mutation p.P247H 0.44 deleterious(0.03) possibly_damaging(0.781) TCGA-LI-A67I-01 X 30747931 30747931 A T GK 3'UTR 0.10 TCGA-LI-A67I-01 X 49641821 49641821 C G USP27X 5'Flank 0.45 TCGA-LI-A67I-01 X 51486909 51486909 G A GSPT2 Missense_Mutation p.V63I 0.38 tolerated_low_confidence(0.21) benign(0.027) TCGA-LI-A9QH-01 10 120353729 120353729 C T PRLHR Missense_Mutation p.R343H 0.67 deleterious(0) probably_damaging(0.991) TCGA-LI-A9QH-01 10 132944799 132944799 G A TCERG1L Missense_Mutation p.P387S 0.58 deleterious(0.03) possibly_damaging(0.904) TCGA-LI-A9QH-01 10 3827225 3827225 G A KLF6 5'UTR 0.27 TCGA-LI-A9QH-01 10 68526128 68526128 G A CTNNA3 Missense_Mutation p.T392M 0.33 deleterious(0) probably_damaging(0.997) TCGA-LI-A9QH-01 11 108164194 108164194 C T ATM Missense_Mutation p.S1589L 0.80 tolerated(0.11) benign(0.011) TCGA-LI-A9QH-01 11 119210232 119210232 A T C1QTNF5 Missense_Mutation p.F181I 0.14 tolerated(0.35) benign(0.104) TCGA-LI-A9QH-01 11 33373356 33373356 G A HIPK3 Missense_Mutation p.G1004S 0.21 tolerated(0.9) benign(0.119) TCGA-LI-A9QH-01 11 5475397 5475397 G C OR51I2 Missense_Mutation p.A227P 0.40 deleterious(0.02) possibly_damaging(0.751) TCGA-LI-A9QH-01 11 5475560 5475560 T C OR51I2 Missense_Mutation p.L281P 0.30 deleterious(0) probably_damaging(1) TCGA-LI-A9QH-01 11 61404783 61404783 T C RPLP0P2 RNA 0.09 TCGA-LI-A9QH-01 11 71817014 71817014 C T LRTOMT Missense_Mutation p.A39V 0.19 deleterious(0.03) probably_damaging(0.985) TCGA-LI-A9QH-01 11 71817090 71817090 C G LRTOMT Silent p.V64V 0.16 TCGA-LI-A9QH-01 11 77918614 77918614 C T USP35 Missense_Mutation p.S477L 0.12 tolerated(0.1) unknown(0) TCGA-LI-A9QH-01 12 104720164 104720164 A T TXNRD1 Missense_Mutation p.I450F 0.37 deleterious(0.03) possibly_damaging(0.771) TCGA-LI-A9QH-01 12 118852390 118852390 C A SUDS3 3'UTR 0.43 TCGA-LI-A9QH-01 12 43925909 43925909 C T ADAMTS20 Silent p.K181K 0.33 TCGA-LI-A9QH-01 12 77415401 77415401 T A E2F7 3'UTR 0.11 TCGA-LI-A9QH-01 12 88443675 88443675 A G C12orf29 3'UTR 0.19 TCGA-LI-A9QH-01 13 106119431 106119431 T A DAOA Missense_Mutation p.F25Y 0.42 deleterious_low_confidence(0) benign(0.294) TCGA-LI-A9QH-01 13 109858995 109858995 G T MYO16 Silent p.V1796V 0.59 TCGA-LI-A9QH-01 13 110839583 110839583 C A COL4A1 Nonsense_Mutation p.G544* 0.17 TCGA-LI-A9QH-01 13 37011865 37011865 C A CCNA1 Missense_Mutation p.Q133K 0.41 tolerated(0.32) benign(0.049) TCGA-LI-A9QH-01 13 70456450 70456450 G C KLHL1 Missense_Mutation p.L398V 0.45 deleterious(0) probably_damaging(0.991) TCGA-LI-A9QH-01 14 104640600 104640600 G A KIF26A Missense_Mutation p.V716M 0.25 deleterious(0) possibly_damaging(0.72) TCGA-LI-A9QH-01 14 105353081 105353081 C T CEP170B Silent p.G835G 1.00 TCGA-LI-A9QH-01 14 20665795 20665795 C T OR11G2 Missense_Mutation p.L101F 0.45 deleterious(0) probably_damaging(0.98) TCGA-LI-A9QH-01 14 35179853 35179853 T A CFL2 3'UTR 0.65 TCGA-LI-A9QH-01 15 101113917 101113917 T A LINS Missense_Mutation p.L387F 0.36 deleterious(0) probably_damaging(1) TCGA-LI-A9QH-01 15 40382280 40382280 A T BMF 3'UTR 0.20 TCGA-LI-A9QH-01 15 42553434 42553434 T A TMEM87A Missense_Mutation p.D140V 0.19 tolerated(0.14) benign(0.007) TCGA-LI-A9QH-01 15 90023597 90023597 C T RHCG Missense_Mutation p.A189T 0.38 deleterious(0) probably_damaging(0.951) TCGA-LI-A9QH-01 16 15844065 15844065 T C MYH11 Missense_Mutation p.K670R 0.24 probably_damaging(0.993) TCGA-LI-A9QH-01 16 46943701 46943701 G A GPT2 Missense_Mutation p.A228T 0.38 tolerated(0.16) benign(0.258) TCGA-LI-A9QH-01 16 64981042 64981042 T C CDH11 3'UTR 0.32 TCGA-LI-A9QH-01 16 89785677 89785677 G A VPS9D1 Intron 0.10 TCGA-LI-A9QH-01 17 12626248 12626248 C T MYOCD Missense_Mutation p.A113V 0.61 deleterious(0.04) benign(0.189) TCGA-LI-A9QH-01 17 18025157 18025157 G T MYO15A Nonsense_Mutation p.E1015* 0.22 TCGA-LI-A9QH-01 17 40035103 40035103 C T ACLY Silent p.K780K 0.07 TCGA-LI-A9QH-01 17 4863379 4863379 C T SPAG7 Missense_Mutation p.D119N 0.10 tolerated(0.46) benign(0.001) TCGA-LI-A9QH-01 17 52992048 52992048 G T TOM1L1 Missense_Mutation p.A183S 0.22 tolerated(0.31) benign(0.103) TCGA-LI-A9QH-01 17 72339230 72339230 C T KIF19 Silent p.N129N 0.27 TCGA-LI-A9QH-01 17 7579311 7579311 C T TP53 Splice_Site p.X125_splice 0.99 TCGA-LI-A9QH-01 18 60998177 60998177 C G KDSR 3'UTR 0.18 TCGA-LI-A9QH-01 18 60998227 60998227 C G KDSR 3'UTR 0.24 TCGA-LI-A9QH-01 18 7231555 7231555 G A LRRC30 Missense_Mutation p.R140Q 0.16 tolerated(0.61) benign(0.017) TCGA-LI-A9QH-01 19 11347064 11347064 C T DOCK6 Missense_Mutation p.V784M 0.23 deleterious(0.01) benign(0.009) TCGA-LI-A9QH-01 19 13060159 13060159 G C RAD23A Missense_Mutation p.Q250H 0.17 deleterious(0.03) benign(0.217) TCGA-LI-A9QH-01 19 16918668 16918668 C T NWD1 Silent p.I1336I 0.27 TCGA-LI-A9QH-01 19 35801001 35801001 G A MAG Missense_Mutation p.V486I 0.30 tolerated(0.4) benign(0.033) TCGA-LI-A9QH-01 19 3593397 3593397 G T GIPC3 3'UTR 0.23 TCGA-LI-A9QH-01 19 36685143 36685143 C A ZNF565 Missense_Mutation p.W75L 0.05 tolerated(0.69) benign(0.037) TCGA-LI-A9QH-01 19 36685966 36685966 C T ZNF565 Silent p.V34V 0.13 TCGA-LI-A9QH-01 19 51165487 51165487 C T SHANK1 Missense_Mutation p.R2074H 1.00 unknown(0) TCGA-LI-A9QH-01 19 54598486 54598486 T G OSCAR 3'UTR 0.31 TCGA-LI-A9QH-01 19 55494500 55494500 C T NLRP2 Silent p.S478S 0.89 TCGA-LI-A9QH-01 19 55525954 55525954 T C GP6 Silent p.G453G 0.54 TCGA-LI-A9QH-01 19 58723009 58723009 C T ZNF274 Silent p.Y311Y 0.90 TCGA-LI-A9QH-01 19 8194143 8194143 G A FBN3 Silent p.A717A 0.32 TCGA-LI-A9QH-01 19 9084743 9084743 G A MUC16 Missense_Mutation p.R2358W 0.24 unknown(0) TCGA-LI-A9QH-01 1 104115688 104115688 C T AMY2B Missense_Mutation p.R107C 0.28 deleterious(0) probably_damaging(0.974) TCGA-LI-A9QH-01 1 112240076 112240076 A C RAP1A Missense_Mutation p.D47A 0.27 deleterious(0) possibly_damaging(0.487) TCGA-LI-A9QH-01 1 153908534 153908534 A G DENND4B Splice_Site p.X856_splice 0.18 TCGA-LI-A9QH-01 1 155429652 155429652 T C ASH1L Silent p.P1674P 0.23 TCGA-LI-A9QH-01 1 156308137 156308137 A G CCT3 5'UTR 0.15 TCGA-LI-A9QH-01 1 15819613 15819613 C A CASP9 Intron 0.29 TCGA-LI-A9QH-01 1 17029215 17029215 G T ESPNP RNA 0.16 TCGA-LI-A9QH-01 1 178875998 178875998 A G RALGPS2 Missense_Mutation p.Q573R 0.17 tolerated(0.19) benign(0.446) TCGA-LI-A9QH-01 1 200956187 200956187 C T KIF21B Missense_Mutation p.R1184Q 0.69 tolerated(0.36) possibly_damaging(0.788) TCGA-LI-A9QH-01 1 207940949 207940949 T C CD46 Intron 0.40 TCGA-LI-A9QH-01 1 225328548 225328548 G A DNAH14 Missense_Mutation p.A523T 0.58 tolerated(0.51) benign(0.04) TCGA-LI-A9QH-01 1 248308470 248308470 C T OR2M5 Silent p.T7T 0.52 TCGA-LI-A9QH-01 1 45250616 45250616 G A BEST4 Silent p.D318D 0.20 TCGA-LI-A9QH-01 1 9324533 9324533 C T H6PD Missense_Mutation p.R661W 0.27 deleterious(0) probably_damaging(0.987) TCGA-LI-A9QH-01 20 43851047 43851047 T C SEMG2 Silent p.D258D 0.25 TCGA-LI-A9QH-01 21 32598231 32598231 G A TIAM1 Silent p.T540T 1.00 TCGA-LI-A9QH-01 21 47976337 47976337 C G DIP2A Intron 0.75 TCGA-LI-A9QH-01 22 16287369 16287369 G A POTEH Missense_Mutation p.R173C 0.13 tolerated(0.08) benign(0.017) TCGA-LI-A9QH-01 22 23974156 23974156 T C C22orf43 Missense_Mutation p.K19E 0.07 tolerated_low_confidence(0.23) probably_damaging(0.981) TCGA-LI-A9QH-01 22 24827477 24827477 G C ADORA2A Intron 0.17 TCGA-LI-A9QH-01 22 26164343 26164343 T C MYO18B Silent p.L154L 0.11 TCGA-LI-A9QH-01 22 32134586 32134586 A G PRR14L Silent p.S87S 0.11 TCGA-LI-A9QH-01 22 37524082 37524082 T C IL2RB 3'UTR 0.23 TCGA-LI-A9QH-01 22 37532384 37532384 T C IL2RB Missense_Mutation p.E196G 0.14 deleterious(0) possibly_damaging(0.608) TCGA-LI-A9QH-01 22 39222606 39222606 C T NPTXR Missense_Mutation p.G333S 0.20 deleterious(0.01) possibly_damaging(0.758) TCGA-LI-A9QH-01 2 132240193 132240193 G A TUBA3D Silent p.V375V 0.35 TCGA-LI-A9QH-01 2 149633079 149633079 G T KIF5C 5'UTR 0.15 TCGA-LI-A9QH-01 2 179426447 179426447 T G TTN Missense_Mutation p.S28138R 0.21 TCGA-LI-A9QH-01 2 182339711 182339711 G T ITGA4 Missense_Mutation p.G115V 0.40 deleterious(0.02) probably_damaging(1) TCGA-LI-A9QH-01 2 191828342 191828342 T A GLS 3'UTR 0.20 TCGA-LI-A9QH-01 2 220136525 220136525 G T TUBA4B RNA 0.26 TCGA-LI-A9QH-01 2 230861515 230861515 A G FBXO36 Missense_Mutation p.N85S 0.34 tolerated(0.3) benign(0.035) TCGA-LI-A9QH-01 2 234681041 234681041 G A UGT1A4 Missense_Mutation p.D481N 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-LI-A9QH-01 3 124540205 124540205 C T ITGB5 Silent p.Q299Q 0.09 TCGA-LI-A9QH-01 3 127799948 127799948 G T RUVBL1 3'UTR 0.22 TCGA-LI-A9QH-01 3 151056330 151056330 C T P2RY12 Missense_Mutation p.V102I 0.61 deleterious(0.02) probably_damaging(0.997) TCGA-LI-A9QH-01 3 168813010 168813010 A T MECOM Missense_Mutation p.F835Y 0.31 deleterious(0.02) probably_damaging(0.998) TCGA-LI-A9QH-01 3 169485726 169485726 T G ACTRT3 Silent p.R205R 0.56 TCGA-LI-A9QH-01 3 170841407 170841407 C G TNIK Missense_Mutation p.G700R 0.34 tolerated(0.05) probably_damaging(0.98) TCGA-LI-A9QH-01 3 48563039 48563039 G A PFKFB4 Missense_Mutation p.R351W 0.29 probably_damaging(1) TCGA-LI-A9QH-01 3 48687949 48687949 C T CELSR3 Missense_Mutation p.V2146I 0.38 tolerated(0.31) benign(0.001) TCGA-LI-A9QH-01 3 89529123 89529123 A C EPHA3 3'UTR 0.17 TCGA-LI-A9QH-01 4 122853434 122853434 C G TRPC3 Missense_Mutation p.E327Q 0.67 deleterious(0) probably_damaging(0.998) TCGA-LI-A9QH-01 4 155843 155843 C T ZNF718 RNA 0.13 TCGA-LI-A9QH-01 4 15733487 15733487 T C BST1 3'UTR 0.42 TCGA-LI-A9QH-01 4 183721521 183721521 G T TENM3 3'UTR 0.22 TCGA-LI-A9QH-01 4 40439840 40439840 G A RBM47 Silent p.Y357Y 0.09 TCGA-LI-A9QH-01 4 76532364 76532364 T C CDKL2 Intron 0.40 TCGA-LI-A9QH-01 5 110835675 110835676 TC - STARD4 Frame_Shift_Del p.D176Sfs*24 0.10 TCGA-LI-A9QH-01 5 140257091 140257091 G A PCDHA12 Silent p.T678T 0.42 TCGA-LI-A9QH-01 5 34880291 34880291 G C TTC23L Missense_Mutation p.V319L 0.28 tolerated(0.06) benign(0.132) TCGA-LI-A9QH-01 5 5034574 5034574 G C LINC01020 RNA 0.22 TCGA-LI-A9QH-01 5 61875822 61875822 A T LRRC70 Missense_Mutation p.D186V 0.10 tolerated(0.11) benign(0.126) TCGA-LI-A9QH-01 5 71756678 71756678 T A ZNF366 Nonsense_Mutation p.K216* 0.26 TCGA-LI-A9QH-01 6 130154683 130154683 A C TMEM244 Missense_Mutation p.F81V 0.11 deleterious(0) possibly_damaging(0.466) TCGA-LI-A9QH-01 6 132892363 132892363 T C TAAR6 Silent p.Y301Y 0.58 TCGA-LI-A9QH-01 6 160575836 160575836 C T SLC22A1 Silent p.L464L 0.44 TCGA-LI-A9QH-01 6 91269900 91269900 G T MAP3K7 Missense_Mutation p.T126N 0.16 tolerated(0.05) possibly_damaging(0.785) TCGA-LI-A9QH-01 6 97002836 97002836 A T UFL1 3'UTR 0.17 TCGA-LI-A9QH-01 6 99729131 99729131 G A FAXC Missense_Mutation p.S380F 0.16 deleterious_low_confidence(0) possibly_damaging(0.61) TCGA-LI-A9QH-01 7 100033348 100033348 A G PPP1R35 Missense_Mutation p.V165A 0.22 deleterious(0) probably_damaging(0.987) TCGA-LI-A9QH-01 7 121960168 121960169 AA - CADPS2 3'UTR 0.25 TCGA-LI-A9QH-01 7 149482730 149482730 C G SSPO RNA 0.35 TCGA-LI-A9QH-01 7 150174540 150174540 C T GIMAP8 Missense_Mutation p.T557M 0.56 tolerated(1) benign(0) TCGA-LI-A9QH-01 7 1938010 1938010 C T MAD1L1 Silent p.V608V 0.82 TCGA-LI-A9QH-01 7 37951720 37951720 C A SFRP4 Splice_Site p.X264_splice 0.08 TCGA-LI-A9QH-01 7 73100964 73100964 A G WBSCR22 Splice_Site p.X29_splice 0.07 TCGA-LI-A9QH-01 7 90837253 90837253 A G CDK14 3'UTR 0.39 TCGA-LI-A9QH-01 7 92207637 92207638 - T FAM133B Frame_Shift_Ins p.R91Kfs*13 0.25 TCGA-LI-A9QH-01 8 124987395 124987395 C T FER1L6 Nonsense_Mutation p.Q178* 0.14 TCGA-LI-A9QH-01 8 145730243 145730243 G A GPT Silent p.A114A 0.71 TCGA-LI-A9QH-01 8 76476429 76476429 T A HNF4G 3'UTR 0.37 TCGA-LI-A9QH-01 9 101833016 101833017 - T COL15A1 3'UTR 0.21 TCGA-LI-A9QH-01 9 138651572 138651572 T C KCNT1 Missense_Mutation p.L301P 0.14 deleterious(0) probably_damaging(0.992) TCGA-LI-A9QH-01 9 140941368 140941368 C T CACNA1B Silent p.F1142F 1.00 TCGA-LI-A9QH-01 9 16412715 16412715 A G BNC2 3'UTR 0.12 TCGA-LI-A9QH-01 9 32407428 32407428 G A ACO1 Splice_Site p.X89_splice 0.45 TCGA-LI-A9QH-01 9 36400230 36400230 A G RNF38 5'Flank 0.33 TCGA-LI-A9QH-01 X 107977403 107977403 A C IRS4 Missense_Mutation p.N724K 0.16 deleterious(0) unknown(0) TCGA-LI-A9QH-01 X 114347861 114347861 C G LRCH2 Missense_Mutation p.R739P 0.54 deleterious(0) probably_damaging(1) TCGA-LI-A9QH-01 X 114427343 114427343 T G RBMXL3 3'UTR 0.48 TCGA-LI-A9QH-01 X 37663304 37663304 G A CYBB Missense_Mutation p.V358I 0.43 deleterious(0.05) probably_damaging(0.952) TCGA-LI-A9QH-01 X 48819067 48819067 C G KCND1 3'UTR 0.31 TCGA-LI-A9QH-01 X 56590841 56590841 C A UBQLN2 Missense_Mutation p.P179T 0.67 deleterious(0) probably_damaging(0.98) TCGA-LI-A9QH-01 X 63406091 63406091 G A AMER1 3'UTR 0.17 TCGA-LI-A9QH-01 X 69849586 69849586 C G TEX11 Splice_Site p.X510_splice 0.21 TCGA-LI-A9QH-01 X 73071079 73071079 C A XIST RNA 0.17 TCGA-LI-A9QH-01 X 77302673 77302673 C G ATP7A 3'UTR 0.23 TCGA-LI-A9QH-01 X 90689890 90689890 C A PABPC5 5'UTR 0.44 TCGA-MB-A5Y8-01 10 103783275 103783275 C G C10orf76 Missense_Mutation p.V210L 0.55 tolerated(0.15) benign(0.09) TCGA-MB-A5Y8-01 10 56129015 56129015 G A PCDH15 Silent p.S113S 0.41 TCGA-MB-A5Y8-01 11 35828045 35828045 C T TRIM44 3'UTR 0.32 TCGA-MB-A5Y8-01 12 133198160 133198160 G A P2RX2 Missense_Mutation p.G366R 0.36 tolerated_low_confidence(0.94) benign(0.004) TCGA-MB-A5Y8-01 12 58145458 58145458 C G CDK4 Missense_Mutation p.G15R 0.38 deleterious(0) probably_damaging(0.999) TCGA-MB-A5Y8-01 12 97102550 97102550 C T C12orf55 Silent p.N2231N 0.39 TCGA-MB-A5Y8-01 14 24727837 24727837 A C TGM1 Missense_Mutation p.F401C 0.42 deleterious(0) probably_damaging(0.954) TCGA-MB-A5Y8-01 15 40661057 40661057 C T DISP2 Missense_Mutation p.P915L 0.33 tolerated(1) benign(0.005) TCGA-MB-A5Y8-01 17 56679184 56679184 A G TEX14 Missense_Mutation p.I560T 0.35 deleterious(0) benign(0.016) TCGA-MB-A5Y8-01 19 19136447 19136447 G C SUGP2 Missense_Mutation p.A237G 0.45 deleterious(0.02) benign(0.05) TCGA-MB-A5Y8-01 19 33137460 33137460 A G ANKRD27 Missense_Mutation p.V92A 0.32 tolerated(0.07) benign(0.153) TCGA-MB-A5Y8-01 1 142803954 142803954 A G RP11-423O2.5 RNA 0.35 TCGA-MB-A5Y8-01 1 158581004 158581004 T C SPTA1 3'UTR 0.38 TCGA-MB-A5Y8-01 1 172411323 172411323 T A PIGC Missense_Mutation p.D147V 0.47 tolerated(0.07) possibly_damaging(0.502) TCGA-MB-A5Y8-01 1 36644133 36644133 C T MAP7D1 Missense_Mutation p.R608C 0.68 possibly_damaging(0.898) TCGA-MB-A5Y8-01 22 45582654 45582654 G A NUP50 3'UTR 0.32 TCGA-MB-A5Y8-01 2 136742985 136742985 C A DARS Missense_Mutation p.M18I 0.36 tolerated(0.18) benign(0) TCGA-MB-A5Y8-01 2 172952850 172952850 C G DLX1 Silent p.P211P 0.26 TCGA-MB-A5Y8-01 3 185797767 185797767 G A ETV5 Silent p.A163A 0.32 TCGA-MB-A5Y8-01 4 48835496 48835496 G C OCIAD1 Missense_Mutation p.R46T 0.40 deleterious(0) probably_damaging(1) TCGA-MB-A5Y8-01 5 171533709 171533709 G A STK10 Missense_Mutation p.P235S 0.13 deleterious(0) probably_damaging(0.999) TCGA-MB-A5Y8-01 5 98129279 98129279 C A RGMB Missense_Mutation p.T420N 0.41 deleterious(0) probably_damaging(0.996) TCGA-MB-A5Y8-01 6 134824057 134824057 A G LINC01010 RNA 0.33 TCGA-MB-A5Y8-01 6 139265676 139265676 G T REPS1 Missense_Mutation p.P238T 0.46 tolerated(0.13) probably_damaging(0.999) TCGA-MB-A5Y8-01 6 2890727 2890727 A G SERPINB9 Silent p.V267V 0.67 TCGA-MB-A5Y8-01 6 93952987 93952987 T A EPHA7 3'UTR 0.14 TCGA-MB-A5Y8-01 7 56129482 56129482 G T CCT6A Missense_Mutation p.V464F 0.11 tolerated(0.05) benign(0.062) TCGA-MB-A5Y8-01 7 99314839 99314839 C T CYP3A7 Missense_Mutation p.R161K 0.13 tolerated(0.3) benign(0.007) TCGA-MB-A5Y8-01 9 107361256 107361256 C T OR13C5 Missense_Mutation p.G147R 0.24 tolerated(0.35) probably_damaging(0.911) TCGA-MB-A5Y8-01 X 114248419 114248419 C T IL13RA2 Missense_Mutation p.C145Y 0.56 deleterious(0) probably_damaging(1) TCGA-MB-A5Y8-01 X 53642779 53642779 G C HUWE1 Missense_Mutation p.L659V 0.14 probably_damaging(0.998) TCGA-MB-A5Y9-01 10 27444301 27444301 G C MASTL 5'UTR 0.09 TCGA-MB-A5Y9-01 10 48370980 48370980 G A ZNF488 Missense_Mutation p.V150M 0.12 tolerated(0.08) possibly_damaging(0.796) TCGA-MB-A5Y9-01 10 67680060 67680060 T C CTNNA3 3'UTR 0.11 TCGA-MB-A5Y9-01 13 75930351 75930351 G A TBC1D4 Missense_Mutation p.R403W 0.24 deleterious(0) probably_damaging(1) TCGA-MB-A5Y9-01 14 38207994 38207994 C T TTC6 Missense_Mutation p.S666F 0.14 deleterious(0.01) benign(0.007) TCGA-MB-A5Y9-01 14 38208169 38208169 C T TTC6 Silent p.I724I 0.19 TCGA-MB-A5Y9-01 15 34355670 34355670 G A CHRM5 Missense_Mutation p.R251K 0.15 tolerated(0.61) benign(0.009) TCGA-MB-A5Y9-01 15 64975614 64975614 C T ZNF609 3'UTR 0.52 TCGA-MB-A5Y9-01 16 24202517 24202517 G A PRKCB Missense_Mutation p.R610H 0.12 tolerated(0.07) benign(0.011) TCGA-MB-A5Y9-01 17 62525505 62525505 G A CEP95 Missense_Mutation p.R469H 0.08 tolerated(0.6) benign(0.003) TCGA-MB-A5Y9-01 19 14581437 14581437 C T PKN1 Silent p.N835N 0.18 TCGA-MB-A5Y9-01 1 101200244 101200244 T C VCAM1 Missense_Mutation p.L660S 0.16 tolerated(0.13) probably_damaging(1) TCGA-MB-A5Y9-01 1 109813851 109813851 C T CELSR2 Silent p.L2537L 0.12 TCGA-MB-A5Y9-01 1 16577304 16577304 C T FBXO42 Missense_Mutation p.G672E 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MB-A5Y9-01 1 171116874 171116874 C T FMO6P Silent p.D198D 0.09 TCGA-MB-A5Y9-01 1 17666208 17666208 C A PADI4 Silent p.T184T 0.08 TCGA-MB-A5Y9-01 1 248616790 248616790 C T OR2T2 Missense_Mutation p.S231F 0.17 deleterious(0) probably_damaging(0.999) TCGA-MB-A5Y9-01 1 44595590 44595590 A G KLF17 Missense_Mutation p.D216G 0.06 tolerated(0.14) benign(0.008) TCGA-MB-A5Y9-01 20 23349479 23349479 A G GZF1 Missense_Mutation p.T514A 0.06 deleterious(0) possibly_damaging(0.9) TCGA-MB-A5Y9-01 21 45993952 45993952 A T KRTAP10-4 Missense_Mutation p.Q106L 0.04 deleterious(0.04) unknown(0) TCGA-MB-A5Y9-01 22 42474788 42474788 C T FAM109B 3'UTR 0.09 TCGA-MB-A5Y9-01 2 108479247 108479247 C T RGPD4 Missense_Mutation p.A772V 0.09 tolerated(0.22) benign(0) TCGA-MB-A5Y9-01 2 111875371 111875371 C T ACOXL Missense_Mutation p.P574L 0.11 tolerated_low_confidence(0.07) benign(0.017) TCGA-MB-A5Y9-01 2 219602407 219602407 C G TTLL4 Nonsense_Mutation p.S3* 0.13 TCGA-MB-A5Y9-01 2 48952849 48952849 C T LHCGR Missense_Mutation p.G117R 0.06 tolerated(0.32) possibly_damaging(0.509) TCGA-MB-A5Y9-01 3 126327434 126327434 C A TXNRD3 Nonsense_Mutation p.E646* 0.11 TCGA-MB-A5Y9-01 4 135121699 135121699 C G PABPC4L Missense_Mutation p.G217A 0.07 deleterious(0) probably_damaging(0.993) TCGA-MB-A5Y9-01 4 166914025 166914025 G A TLL1 Missense_Mutation p.R117K 0.25 tolerated(0.32) benign(0.002) TCGA-MB-A5Y9-01 5 140202722 140202722 C T PCDHA5 Silent p.F454F 0.28 TCGA-MB-A5Y9-01 5 140209500 140209500 G A PCDHA6 Silent p.S608S 0.06 TCGA-MB-A5Y9-01 5 173534358 173534358 C T NSG2 Silent p.S122S 0.05 TCGA-MB-A5Y9-01 6 31599378 31599378 C G PRRC2A Silent p.P976P 0.08 TCGA-MB-A5Y9-01 6 32261597 32261597 T C C6orf10 Missense_Mutation p.K285E 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-MB-A5Y9-01 6 32943886 32943886 G C BRD2 Missense_Mutation p.E184Q 0.07 deleterious(0) possibly_damaging(0.907) TCGA-MB-A5Y9-01 6 47681949 47681949 T C GPR115 Missense_Mutation p.V323A 0.11 deleterious(0.03) benign(0.043) TCGA-MB-A5Y9-01 6 56351945 56351945 G C DST Missense_Mutation p.L4379V 0.06 possibly_damaging(0.749) TCGA-MB-A5Y9-01 7 11415429 11415429 C T THSD7A Missense_Mutation p.D1656N 0.06 deleterious(0) probably_damaging(0.998) TCGA-MB-A5Y9-01 7 82451804 82451804 C G PCLO Intron 0.09 TCGA-MB-A5Y9-01 8 23049106 23049106 C A TNFRSF10A 3'UTR 0.30 TCGA-MB-A5Y9-01 9 112963433 112963433 A T C9orf152 Missense_Mutation p.I172N 0.10 tolerated(0.16) benign(0.01) TCGA-MB-A5Y9-01 9 138012214 138012214 G A OLFM1 3'UTR 0.23 TCGA-MB-A5Y9-01 9 90534135 90534135 C G SPATA31C1 Intron 0.08 TCGA-MB-A5Y9-01 X 32583996 32583996 A T DMD Silent p.V605V 0.12 TCGA-MB-A5Y9-01 X 37027132 37027132 A T FAM47C Missense_Mutation p.T217S 0.10 tolerated(0.1) probably_damaging(0.99) TCGA-MB-A5YA-01 11 33563971 33563971 G A KIAA1549L 5'UTR 0.10 TCGA-MB-A5YA-01 11 57505881 57505881 C G TMX2 Nonsense_Mutation p.Y140* 0.39 TCGA-MB-A5YA-01 11 66105180 66105180 G C BRMS1 Missense_Mutation p.L278V 0.36 deleterious_low_confidence(0.03) benign(0.005) TCGA-MB-A5YA-01 11 70332818 70332818 C T SHANK2 Missense_Mutation p.G1195S 0.43 tolerated(0.55) benign(0) TCGA-MB-A5YA-01 12 96894645 96894645 C T C12orf55 Silent p.Y117Y 0.51 TCGA-MB-A5YA-01 15 27193366 27193366 G A GABRA5 Missense_Mutation p.A459T 0.11 tolerated_low_confidence(0.59) benign(0) TCGA-MB-A5YA-01 15 51828631 51828631 C T DMXL2 Silent p.Q682Q 0.27 TCGA-MB-A5YA-01 16 56974090 56974090 A G HERPUD1 Missense_Mutation p.I280V 0.07 deleterious(0.02) benign(0.033) TCGA-MB-A5YA-01 16 74747846 74747846 G A FA2H 3'UTR 0.38 TCGA-MB-A5YA-01 17 32955593 32955593 A G TMEM132E Missense_Mutation p.K247R 0.40 deleterious(0.01) probably_damaging(0.917) TCGA-MB-A5YA-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.46 TCGA-MB-A5YA-01 19 36275201 36275201 G A ARHGAP33 Missense_Mutation p.A517T 0.35 tolerated_low_confidence(0.07) possibly_damaging(0.695) TCGA-MB-A5YA-01 19 50093807 50093807 C T PRRG2 3'UTR 0.38 TCGA-MB-A5YA-01 19 9064400 9064400 T A MUC16 Missense_Mutation p.K7682N 0.08 unknown(0) TCGA-MB-A5YA-01 1 145282606 145282606 G A NOTCH2NL 3'UTR 0.21 TCGA-MB-A5YA-01 1 154951478 154951478 G C CKS1B 3'UTR 0.38 TCGA-MB-A5YA-01 1 155719714 155719714 C T GON4L 3'UTR 0.40 TCGA-MB-A5YA-01 1 159504982 159504982 A T OR10J5 Silent p.V272V 0.35 TCGA-MB-A5YA-01 1 169511443 169511443 G C F5 Missense_Mutation p.T962S 0.08 tolerated(0.06) benign(0.228) TCGA-MB-A5YA-01 1 169511444 169511444 T A F5 Missense_Mutation p.T962S 0.08 tolerated(0.06) benign(0.228) TCGA-MB-A5YA-01 1 201869274 201869274 T C LMOD1 Silent p.K289K 0.41 TCGA-MB-A5YA-01 1 21053559 21053559 G A SH2D5 Nonsense_Mutation p.R60* 0.43 TCGA-MB-A5YA-01 1 91382345 91382345 T C ZNF644 3'UTR 0.34 TCGA-MB-A5YA-01 20 43547557 43547557 C T PABPC1L Missense_Mutation p.H172Y 0.18 tolerated(0.08) possibly_damaging(0.833) TCGA-MB-A5YA-01 21 42804053 42804053 C T MX1 Missense_Mutation p.P19L 0.30 tolerated_low_confidence(0.68) benign(0.001) TCGA-MB-A5YA-01 21 45945565 45945565 T A TSPEAR Missense_Mutation p.H436L 0.13 tolerated(0.15) possibly_damaging(0.643) TCGA-MB-A5YA-01 2 131890578 131890578 T C PLEKHB2 Missense_Mutation p.L146P 0.42 tolerated(0.21) benign(0.029) TCGA-MB-A5YA-01 2 133554264 133554264 A G NCKAP5 Silent p.D282D 0.23 TCGA-MB-A5YA-01 2 159536984 159536984 A G PKP4 Missense_Mutation p.N1125S 0.07 tolerated(0.18) benign(0.021) TCGA-MB-A5YA-01 2 225739435 225739435 G A DOCK10 Missense_Mutation p.T322M 0.21 tolerated(0.11) benign(0.002) TCGA-MB-A5YA-01 2 5838715 5838715 G A SOX11 3'UTR 0.36 TCGA-MB-A5YA-01 2 75107578 75107578 G T HK2 Silent p.L484L 0.41 TCGA-MB-A5YA-01 3 145828222 145828222 A G PLOD2 Missense_Mutation p.F118L 0.40 tolerated(0.32) benign(0.016) TCGA-MB-A5YA-01 3 175521545 175521545 A C NAALADL2 3'UTR 0.49 TCGA-MB-A5YA-01 3 184009904 184009904 C T ECE2 Missense_Mutation p.P844S 0.40 tolerated(0.61) possibly_damaging(0.901) TCGA-MB-A5YA-01 3 20194386 20194386 A G KAT2B 3'UTR 0.37 TCGA-MB-A5YA-01 3 3111914 3111914 A C IL5RA Missense_Mutation p.F420V 0.21 deleterious(0) probably_damaging(0.922) TCGA-MB-A5YA-01 3 42707547 42707547 A - ZBTB47 3'Flank 0.27 TCGA-MB-A5YA-01 3 51680404 51680404 C T RAD54L2 Missense_Mutation p.T978I 0.70 deleterious(0.02) benign(0.028) TCGA-MB-A5YA-01 4 110662251 110662251 G C CFI Missense_Mutation p.S517C 0.32 deleterious(0) probably_damaging(0.976) TCGA-MB-A5YA-01 4 155156309 155156309 C T DCHS2 Silent p.G2710G 0.36 TCGA-MB-A5YA-01 4 183064420 183064420 A G AC108142.1 RNA 0.32 TCGA-MB-A5YA-01 4 55164365 55164365 T A PDGFRA 3'UTR 0.50 TCGA-MB-A5YA-01 4 94006200 94006200 C T GRID2 Missense_Mutation p.T100M 0.47 tolerated(0.23) benign(0.013) TCGA-MB-A5YA-01 5 140182465 140182465 C T PCDHA3 Silent p.N561N 0.05 TCGA-MB-A5YA-01 5 179290867 179290867 C T TBC1D9B Missense_Mutation p.G1112S 0.35 tolerated(0.67) benign(0.001) TCGA-MB-A5YA-01 6 102516449 102516449 G A GRIK2 3'UTR 0.49 TCGA-MB-A5YA-01 6 39267321 39267321 G C KCNK17 Missense_Mutation p.P294R 0.47 tolerated(0.24) benign(0.162) TCGA-MB-A5YA-01 7 100014754 100014754 T C ZCWPW1 Silent p.V138V 0.37 TCGA-MB-A5YA-01 X 155250722 155250722 T C WASIR1 5'Flank 0.17 TCGA-MB-A5YA-01 X 24230586 24230586 G A ZFX 3'UTR 0.65 TCGA-MB-A8JK-01 11 105850542 105850542 C T GRIA4 3'UTR 0.45 TCGA-MB-A8JK-01 11 119982989 119982989 G T TRIM29 3'UTR 0.25 TCGA-MB-A8JK-01 11 124793631 124793631 C T HEPACAM Missense_Mutation p.V235I 0.08 tolerated(0.36) probably_damaging(0.999) TCGA-MB-A8JK-01 11 58338061 58338061 G T LPXN Missense_Mutation p.L52I 0.25 tolerated(0.21) benign(0.001) TCGA-MB-A8JK-01 11 64374700 64374700 T C NRXN2 Missense_Mutation p.K1703E 0.26 deleterious(0.01) benign(0.013) TCGA-MB-A8JK-01 11 6497619 6497619 G A ARFIP2 3'UTR 0.12 TCGA-MB-A8JK-01 11 70265954 70265954 C - CTTN Frame_Shift_Del p.Q225Rfs*5 0.21 TCGA-MB-A8JK-01 11 93844717 93844717 T A HEPHL1 Missense_Mutation p.Y1075N 0.07 tolerated(0.27) benign(0.007) TCGA-MB-A8JK-01 12 121161039 121161039 A G UNC119B 3'UTR 0.15 TCGA-MB-A8JK-01 12 123519085 123519085 C T PITPNM2 Missense_Mutation p.R18H 0.08 deleterious(0) probably_damaging(0.999) TCGA-MB-A8JK-01 12 125834135 125834135 T C TMEM132B Missense_Mutation p.S64P 0.08 deleterious(0.01) possibly_damaging(0.558) TCGA-MB-A8JK-01 12 27234074 27234074 A G C12orf71 3'UTR 0.17 TCGA-MB-A8JK-01 12 352901 352901 T G SLC6A13 Missense_Mutation p.Q94P 0.07 deleterious(0) probably_damaging(0.974) TCGA-MB-A8JK-01 12 9162633 9162633 C G KLRG1 3'UTR 0.29 TCGA-MB-A8JK-01 13 101763479 101763479 C T NALCN Missense_Mutation p.R764H 0.78 tolerated(0.14) benign(0.225) TCGA-MB-A8JK-01 15 48066051 48066051 G A SEMA6D 3'UTR 0.43 TCGA-MB-A8JK-01 15 72636271 72636271 C T HEXA 3'UTR 0.21 TCGA-MB-A8JK-01 16 5061242 5061242 C A SEC14L5 Nonsense_Mutation p.Y649* 0.15 TCGA-MB-A8JK-01 16 82032645 82032645 C T SDR42E1 3'UTR 0.19 TCGA-MB-A8JK-01 17 11593505 11593505 C T DNAH9 Missense_Mutation p.R1456W 0.53 possibly_damaging(0.893) TCGA-MB-A8JK-01 17 42828395 42828395 T - DBF4B Frame_Shift_Del p.G542Dfs*71 0.17 TCGA-MB-A8JK-01 17 49245607 49245607 C G NME1-NME2 Missense_Mutation p.S159C 0.15 deleterious(0.01) benign(0.354) TCGA-MB-A8JK-01 17 56569116 56569116 A G MTMR4 Missense_Mutation p.C1166R 0.06 deleterious(0) probably_damaging(1) TCGA-MB-A8JK-01 17 60526635 60526635 A G METTL2A 3'UTR 0.30 TCGA-MB-A8JK-01 19 42125526 42125526 A G CEACAM4 3'UTR 0.50 TCGA-MB-A8JK-01 19 44426424 44426424 G T ZNF45 Intron 0.17 TCGA-MB-A8JK-01 19 50962526 50962526 C G MYBPC2 Missense_Mutation p.N918K 0.15 tolerated(0.1) probably_damaging(0.977) TCGA-MB-A8JK-01 19 6954619 6954619 T C RP11-1137G4.3 RNA 0.18 TCGA-MB-A8JK-01 1 168215941 168215941 G C SFT2D2 3'UTR 0.15 TCGA-MB-A8JK-01 1 179966060 179966060 C T CEP350 Silent p.D256D 0.14 TCGA-MB-A8JK-01 1 226026987 226026987 A G EPHX1 Missense_Mutation p.Y221C 0.35 deleterious(0) probably_damaging(0.999) TCGA-MB-A8JK-01 1 228401199 228401199 C T OBSCN Missense_Mutation p.S349L 0.36 possibly_damaging(0.857) TCGA-MB-A8JK-01 1 43815117 43815117 C T MPL Intron 0.35 TCGA-MB-A8JK-01 1 85725291 85725291 A C C1orf52 Missense_Mutation p.L9R 0.17 tolerated(0.06) possibly_damaging(0.779) TCGA-MB-A8JK-01 20 32254579 32254579 T C ACTL10 5'UTR 0.22 TCGA-MB-A8JK-01 20 9404506 9404506 A C PLCB4 Missense_Mutation p.I799L 0.30 deleterious(0.01) possibly_damaging(0.778) TCGA-MB-A8JK-01 22 19118601 19118601 C T TSSK2 5'UTR 0.49 TCGA-MB-A8JK-01 22 23825282 23825282 C T AP000345.1 RNA 0.22 TCGA-MB-A8JK-01 22 43600071 43600071 T C SCUBE1 Missense_Mutation p.M967V 0.22 deleterious(0) probably_damaging(0.968) TCGA-MB-A8JK-01 2 135694493 135694493 A G CCNT2 Missense_Mutation p.H108R 0.35 deleterious(0.01) possibly_damaging(0.463) TCGA-MB-A8JK-01 2 175260360 175260360 G A CIR1 5'UTR 0.20 TCGA-MB-A8JK-01 2 1896039 1896039 G A MYT1L Missense_Mutation p.P683S 0.12 tolerated(1) benign(0.004) TCGA-MB-A8JK-01 2 33952223 33952223 G T AC009499.1 Intron 0.18 TCGA-MB-A8JK-01 2 95494915 95494915 C T ANKRD20A8P Intron 0.20 TCGA-MB-A8JK-01 3 125872063 125872063 G T ALDH1L1 Intron 0.22 TCGA-MB-A8JK-01 3 137843394 137843394 G A A4GNT Silent p.S245S 0.07 TCGA-MB-A8JK-01 3 75679976 75679976 A C MIR1324 RNA 0.04 TCGA-MB-A8JK-01 3 97592698 97592698 A G CRYBG3 Missense_Mutation p.Q887R 0.65 TCGA-MB-A8JK-01 5 137804243 137804243 G T EGR1 3'UTR 0.38 TCGA-MB-A8JK-01 5 162943725 162943725 G C MAT2B Intron 0.26 TCGA-MB-A8JK-01 5 179528441 179528441 G A RASGEF1C 3'UTR 0.24 TCGA-MB-A8JK-01 5 72858439 72858439 C T ANKRA2 Missense_Mutation p.V90M 0.25 deleterious(0) probably_damaging(0.994) TCGA-MB-A8JK-01 6 21595992 21595992 C - SOX4 Frame_Shift_Del p.S411Afs*44 0.38 TCGA-MB-A8JK-01 7 14881044 14881044 G T DGKB 5'UTR 0.18 TCGA-MB-A8JK-01 7 87214969 87214969 A G ABCB1 Silent p.L49L 0.19 TCGA-MB-A8JK-01 7 92735360 92735360 C T SAMD9 Silent p.E17E 0.10 TCGA-MB-A8JK-01 8 48739373 48739410 ACAGCCGCTGGGTCGAGGCTCAGCAGGGCTGCGTGCTG - PRKDC Frame_Shift_Del p.Q2863* 0.33 TCGA-MB-A8JK-01 9 114411784 114411784 G A DNAJC25 Missense_Mutation p.V181M 0.10 deleterious(0.02) benign(0.176) TCGA-MB-A8JK-01 9 133954581 133954581 C T LAMC3 Silent p.L1275L 0.36 TCGA-MB-A8JK-01 9 136199122 136199122 C A SURF6 Missense_Mutation p.R223S 0.31 tolerated(0.45) benign(0.154) TCGA-MB-A8JK-01 9 16415527 16415527 T C BNC2 3'UTR 0.12 TCGA-MB-A8JK-01 X 119670866 119670866 C G CUL4B Silent p.P672P 0.83 TCGA-MB-A8JK-01 X 85119538 85119538 G C CHM 3'UTR 0.68 TCGA-MB-A8JL-01 10 123970007 123970007 G A TACC2 Missense_Mutation p.V2023I 0.36 probably_damaging(0.982) TCGA-MB-A8JL-01 10 27352964 27352964 C A ANKRD26 Missense_Mutation p.G439V 0.18 tolerated(0.09) benign(0.054) TCGA-MB-A8JL-01 10 50944187 50944187 C T OGDHL Missense_Mutation p.A931T 0.47 tolerated(0.14) benign(0.006) TCGA-MB-A8JL-01 11 111745984 111745984 G A FDXACB1 Missense_Mutation p.R513C 0.28 deleterious(0) possibly_damaging(0.858) TCGA-MB-A8JL-01 11 66330562 66330562 C T CTSF 3'Flank 0.47 TCGA-MB-A8JL-01 11 74799812 74799812 C T OR2AT4 Missense_Mutation p.C316Y 0.35 tolerated_low_confidence(0.93) benign(0.004) TCGA-MB-A8JL-01 12 111801137 111801137 G A FAM109A Missense_Mutation p.A45V 0.44 tolerated(0.12) possibly_damaging(0.69) TCGA-MB-A8JL-01 12 131692260 131692260 G A RP11-638F5.1 RNA 0.44 TCGA-MB-A8JL-01 12 27627847 27627848 - T SMCO2 Splice_Site p.X121_splice 0.35 TCGA-MB-A8JL-01 14 19988304 19988304 C A POTEM 3'UTR 0.14 TCGA-MB-A8JL-01 14 96997974 96997974 A G PAPOLA Intron 0.05 TCGA-MB-A8JL-01 15 24923769 24923769 C T NPAP1 Missense_Mutation p.P919S 0.53 tolerated(0.79) benign(0.005) TCGA-MB-A8JL-01 16 31338251 31338251 G A ITGAM Silent p.V902V 0.79 TCGA-MB-A8JL-01 17 7366451 7366451 C T ZBTB4 Missense_Mutation p.R617H 0.47 probably_damaging(0.967) TCGA-MB-A8JL-01 17 7577095 7577095 G C TP53 Missense_Mutation p.D281E 0.47 deleterious(0.01) probably_damaging(0.971) TCGA-MB-A8JL-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.41 deleterious(0) probably_damaging(0.997) TCGA-MB-A8JL-01 19 13251016 13251016 G C NACC1 3'UTR 0.43 TCGA-MB-A8JL-01 19 36506793 36506793 T C CLIP3 3'UTR 0.47 TCGA-MB-A8JL-01 19 56416319 56416319 T C NLRP13 Silent p.L869L 0.35 TCGA-MB-A8JL-01 19 871225 871225 C T MED16 Silent p.P709P 0.42 TCGA-MB-A8JL-01 1 152185905 152185905 C G HRNR Missense_Mutation p.D2734H 0.53 unknown(0) TCGA-MB-A8JL-01 1 152188496 152188496 C T HRNR Missense_Mutation p.G1870E 0.10 unknown(0) TCGA-MB-A8JL-01 1 152280704 152280704 A G FLG Missense_Mutation p.S2220P 0.08 possibly_damaging(0.637) TCGA-MB-A8JL-01 1 156231177 156231177 C A SMG5 Missense_Mutation p.R685L 0.48 deleterious(0) probably_damaging(1) TCGA-MB-A8JL-01 1 2077516 2077516 C T PRKCZ Silent p.D201D 0.45 TCGA-MB-A8JL-01 1 28285146 28285146 C A SMPDL3B Missense_Mutation p.L389M 0.55 deleterious(0.01) probably_damaging(0.95) TCGA-MB-A8JL-01 1 93300445 93300445 G T RPL5 Missense_Mutation p.C100F 0.27 deleterious(0) possibly_damaging(0.585) TCGA-MB-A8JL-01 20 60294111 60294112 CT - RP11-429E11.3 Frame_Shift_Del p.S39Cfs*12 0.42 TCGA-MB-A8JL-01 21 19629315 19629315 G A CHODL Missense_Mutation p.G140R 0.53 deleterious(0) probably_damaging(0.998) TCGA-MB-A8JL-01 22 18979573 18979573 G A DGCR5 RNA 0.17 TCGA-MB-A8JL-01 22 24573619 24573619 A C CABIN1 Missense_Mutation p.K2118T 0.32 tolerated_low_confidence(0.08) possibly_damaging(0.587) TCGA-MB-A8JL-01 2 171811195 171811195 G A GORASP2 Missense_Mutation p.R201Q 0.45 deleterious(0) benign(0.059) TCGA-MB-A8JL-01 2 197504420 197504420 T A CCDC150 5'UTR 0.45 TCGA-MB-A8JL-01 2 213914541 213914541 C A IKZF2 Missense_Mutation p.R157I 0.47 deleterious(0) probably_damaging(0.999) TCGA-MB-A8JL-01 2 3502846 3502846 G A ADI1 Missense_Mutation p.T143M 0.54 tolerated(0.07) benign(0.066) TCGA-MB-A8JL-01 2 37208607 37208607 T - HEATR5B 3'UTR 0.33 TCGA-MB-A8JL-01 2 48822585 48822585 G C STON1 3'UTR 0.55 TCGA-MB-A8JL-01 4 140812037 140812037 A G MAML3 Missense_Mutation p.F185L 0.40 probably_damaging(0.986) TCGA-MB-A8JL-01 4 17524516 17524516 G A CLRN2 Missense_Mutation p.A95T 0.53 tolerated(0.77) benign(0.002) TCGA-MB-A8JL-01 6 132014684 132014684 G A ENPP3 Silent p.L444L 0.28 TCGA-MB-A8JL-01 6 135286141 135286141 T C HBS1L 3'UTR 0.41 TCGA-MB-A8JL-01 6 29454663 29454663 A T MAS1L Missense_Mutation p.D339E 0.48 deleterious(0) benign(0.065) TCGA-MB-A8JL-01 6 34502613 34502613 T C PACSIN1 3'UTR 0.49 TCGA-MB-A8JL-01 7 142180673 142180673 C A TRBV6-5 Silent p.L62L 0.25 TCGA-MB-A8JL-01 7 157060678 157060678 C T UBE3C 3'UTR 0.29 TCGA-MB-A8JL-01 7 5353375 5353375 G A TNRC18 Nonsense_Mutation p.R2383* 0.53 TCGA-MB-A8JL-01 7 5417646 5417646 C A TNRC18 Missense_Mutation p.R721L 0.36 probably_damaging(0.933) TCGA-MB-A8JL-01 7 97788700 97788700 C T LMTK2 Missense_Mutation p.A207V 0.42 tolerated(0.11) probably_damaging(0.998) TCGA-MB-A8JL-01 9 136230252 136230252 T C SURF4 3'UTR 0.50 TCGA-MB-A8JL-01 9 140218215 140218215 C T EXD3 Missense_Mutation p.V716M 0.49 deleterious(0.02) possibly_damaging(0.766) TCGA-MB-A8JL-01 9 43627364 43627364 C A SPATA31A6 Missense_Mutation p.Q441H 0.47 deleterious(0) probably_damaging(0.992) TCGA-MB-A8JL-01 9 69147456 69147463 CGTCCTGC TGTTTTG RP11-58A12.3 Intron 0.15 TCGA-MJ-A68H-01 10 24834065 24834065 C T KIAA1217 Intron 0.56 TCGA-MJ-A68H-01 11 118375819 118375819 C T KMT2A Missense_Mutation p.P3071L 0.27 probably_damaging(0.972) TCGA-MJ-A68H-01 11 18257399 18257399 G A SAA4 Silent p.F25F 0.43 TCGA-MJ-A68H-01 11 2167563 2167563 C T INS-IGF2 3'Flank 0.57 TCGA-MJ-A68H-01 11 5444200 5444200 T A OR51Q1 Missense_Mutation p.M257K 0.41 deleterious(0) probably_damaging(0.944) TCGA-MJ-A68H-01 11 57576833 57576833 C G CTNND1 Missense_Mutation p.S777C 0.38 deleterious(0.05) benign(0.214) TCGA-MJ-A68H-01 11 63676504 63676504 A G MARK2 Missense_Mutation p.N721S 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-MJ-A68H-01 12 10194076 10194076 C T CLEC9A 5'UTR 0.46 TCGA-MJ-A68H-01 12 49719940 49719940 C T TROAP Missense_Mutation p.R239W 0.32 deleterious(0.03) benign(0.081) TCGA-MJ-A68H-01 12 6437022 6437022 G A PLEKHG6 Missense_Mutation p.R758Q 0.62 tolerated_low_confidence(0.39) benign(0.001) TCGA-MJ-A68H-01 12 72030390 72030390 G A ZFC3H1 Silent p.N660N 0.13 TCGA-MJ-A68H-01 14 23417122 23417122 C T HAUS4 Silent p.K221K 0.28 TCGA-MJ-A68H-01 14 61177311 61177311 C T SIX4 3'UTR 0.29 TCGA-MJ-A68H-01 14 77795516 77795516 C T GSTZ1 Silent p.A131A 0.20 TCGA-MJ-A68H-01 14 81302669 81302669 G A CEP128 Missense_Mutation p.R313C 0.14 deleterious(0) probably_damaging(0.976) TCGA-MJ-A68H-01 15 60720639 60720639 T C NARG2 Missense_Mutation p.T937A 0.23 tolerated(0.87) benign(0) TCGA-MJ-A68H-01 15 81440868 81440868 G A C15orf26 Silent p.T300T 0.16 TCGA-MJ-A68H-01 16 14711476 14711476 C T PARN Missense_Mutation p.G120E 0.46 deleterious(0.02) possibly_damaging(0.875) TCGA-MJ-A68H-01 16 677472 677472 C T RAB40C Silent p.N232N 0.27 TCGA-MJ-A68H-01 16 69368559 69368559 G A RP11-343C2.12 Silent p.P72P 0.79 TCGA-MJ-A68H-01 17 11583113 11583113 C T DNAH9 Silent p.S1131S 0.25 TCGA-MJ-A68H-01 17 41164274 41164274 G A IFI35 Missense_Mutation p.G34R 0.18 tolerated(0.53) benign(0.001) TCGA-MJ-A68H-01 17 4462705 4462705 G A GGT6 Silent p.N124N 0.53 TCGA-MJ-A68H-01 18 52890948 52890948 T C TCF4 3'Flank 0.39 TCGA-MJ-A68H-01 19 52217143 52217143 G A HAS1 Missense_Mutation p.A425V 0.26 tolerated(0.22) benign(0.018) TCGA-MJ-A68H-01 19 53344717 53344717 C A ZNF468 Missense_Mutation p.G277V 0.27 deleterious(0) probably_damaging(0.989) TCGA-MJ-A68H-01 19 53911520 53911520 T G ZNF765 Missense_Mutation p.L238V 0.42 deleterious(0.03) possibly_damaging(0.85) TCGA-MJ-A68H-01 19 6669985 6669985 C T TNFSF14 Silent p.S32S 0.21 TCGA-MJ-A68H-01 1 159860314 159860314 T C CCDC19 Silent p.P76P 0.20 TCGA-MJ-A68H-01 1 176998830 176998830 C T ASTN1 Missense_Mutation p.E354K 0.28 tolerated_low_confidence(0.07) benign(0.045) TCGA-MJ-A68H-01 1 186269343 186269343 C T PRG4 Missense_Mutation p.A66V 0.05 benign(0.052) TCGA-MJ-A68H-01 1 216062283 216062284 - AT USH2A Frame_Shift_Ins p.L2570Ifs*8 0.26 TCGA-MJ-A68H-01 1 36389657 36389657 T - AGO1 3'UTR 0.22 TCGA-MJ-A68H-01 20 2308810 2308810 G T TGM3 Missense_Mutation p.G378C 0.33 deleterious(0) probably_damaging(1) TCGA-MJ-A68H-01 20 45867527 45867527 T C ZMYND8 Intron 0.39 TCGA-MJ-A68H-01 21 42080624 42080624 G A DSCAM Silent p.T39T 0.17 TCGA-MJ-A68H-01 21 44520699 44520699 G A U2AF1 Intron 0.11 TCGA-MJ-A68H-01 21 45844781 45844781 G A TRPM2 Missense_Mutation p.R1199Q 0.21 tolerated(0.24) benign(0.004) TCGA-MJ-A68H-01 21 45919319 45919319 C T TSPEAR 3'UTR 0.24 TCGA-MJ-A68H-01 22 22161991 22161993 GTC - MAPK1 In_Frame_Del p.D88del 0.23 TCGA-MJ-A68H-01 2 223493573 223493573 T C FARSB Missense_Mutation p.K295E 0.33 tolerated(0.63) benign(0.001) TCGA-MJ-A68H-01 2 234651912 234651912 A T UGT1A10 Intron 0.22 TCGA-MJ-A68H-01 2 241662925 241662925 G A KIF1A Missense_Mutation p.R1457W 0.38 deleterious(0) probably_damaging(0.997) TCGA-MJ-A68H-01 2 80875288 80875288 A G CTNNA2 3'UTR 0.25 TCGA-MJ-A68H-01 3 112300027 112300027 C T SLC35A5 Missense_Mutation p.P355S 0.19 deleterious(0.04) probably_damaging(1) TCGA-MJ-A68H-01 3 124540214 124540214 G A ITGB5 Silent p.H296H 0.33 TCGA-MJ-A68H-01 3 148577804 148577804 G A CPB1 3'UTR 0.57 TCGA-MJ-A68H-01 3 197665423 197665423 C G IQCG Missense_Mutation p.D171H 0.25 deleterious(0) probably_damaging(0.999) TCGA-MJ-A68H-01 3 77638020 77638020 G A ROBO2 Silent p.L889L 0.13 TCGA-MJ-A68H-01 4 129795609 129795609 G A JADE1 3'UTR 0.15 TCGA-MJ-A68H-01 4 42145445 42145445 C A BEND4 Missense_Mutation p.V352L 0.43 deleterious_low_confidence(0) benign(0.208) TCGA-MJ-A68H-01 5 113699693 113699693 A T KCNN2 Missense_Mutation p.I193L 0.10 deleterious(0) possibly_damaging(0.768) TCGA-MJ-A68H-01 5 64466447 64466447 C T ADAMTS6 Missense_Mutation p.E1081K 0.26 deleterious(0.05) benign(0.098) TCGA-MJ-A68H-01 6 158515005 158515005 G A SYNJ2 Intron 0.32 TCGA-MJ-A68H-01 6 32948413 32948413 G A BRD2 Missense_Mutation p.S810N 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-MJ-A68H-01 6 4062343 4062343 G T PRPF4B 3'Flank 0.32 TCGA-MJ-A68H-01 6 90636392 90636392 C T BACH2 3'UTR 0.31 TCGA-MJ-A68H-01 7 50467870 50467870 G A IKZF1 Missense_Mutation p.A327T 0.57 tolerated(0.08) benign(0.302) TCGA-MJ-A68H-01 7 99063734 99063734 C G ATP5J2 Missense_Mutation p.V11L 0.37 tolerated(0.05) benign(0.077) TCGA-MJ-A68H-01 8 10583914 10583914 G A SOX7 Silent p.P219P 0.26 TCGA-MJ-A68H-01 8 19297416 19297416 C G CSGALNACT1 Missense_Mutation p.R293T 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-MJ-A68H-01 8 28017900 28017900 T C ELP3 Missense_Mutation p.I471T 0.24 deleterious(0) possibly_damaging(0.512) TCGA-MJ-A68H-01 9 123921164 123921164 T C CNTRL Missense_Mutation p.L1599S 0.41 possibly_damaging(0.883) TCGA-MJ-A68H-01 9 131670725 131670725 C T LRRC8A Silent p.L428L 0.47 TCGA-MJ-A68H-01 9 136536792 136536792 C T SARDH Missense_Mutation p.G731R 0.49 deleterious(0.01) probably_damaging(0.995) TCGA-MJ-A68H-01 9 139733681 139733681 A C RABL6 Missense_Mutation p.I502L 0.27 tolerated_low_confidence(0.5) benign(0) TCGA-MJ-A68H-01 9 140437933 140437933 T A PNPLA7 Nonsense_Mutation p.K153* 0.45 TCGA-MJ-A68H-01 X 139038107 139038107 G A CXorf66 Missense_Mutation p.T345M 0.25 tolerated(0.28) benign(0.002) TCGA-MJ-A68H-01 X 148586771 148586771 C T IDS 5'UTR 0.67 TCGA-MJ-A68J-01 10 96292870 96292870 A T TBC1D12 3'UTR 0.37 TCGA-MJ-A68J-01 11 108119792 108119792 C A ATM Missense_Mutation p.L400I 0.28 tolerated(0.1) possibly_damaging(0.652) TCGA-MJ-A68J-01 11 124751212 124751212 C T ROBO3 3'UTR 0.24 TCGA-MJ-A68J-01 11 133938975 133938975 C T JAM3 5'UTR 0.34 TCGA-MJ-A68J-01 12 104381509 104381509 A G TDG 3'UTR 0.11 TCGA-MJ-A68J-01 12 55820132 55820132 C T OR6C76 Missense_Mutation p.T32M 0.29 deleterious_low_confidence(0.01) benign(0.223) TCGA-MJ-A68J-01 15 22853761 22853761 G C TUBGCP5 Missense_Mutation p.E467Q 0.35 tolerated(0.26) possibly_damaging(0.74) TCGA-MJ-A68J-01 15 26874169 26874169 C A GABRB3 Intron 0.36 TCGA-MJ-A68J-01 15 44876519 44876519 C A SPG11 Missense_Mutation p.D1787Y 0.39 deleterious(0) probably_damaging(0.923) TCGA-MJ-A68J-01 16 16248796 16248796 G A ABCC6 Silent p.I1325I 0.30 TCGA-MJ-A68J-01 1 202571629 202571629 G C SYT2 Missense_Mutation p.D170E 0.39 deleterious(0) possibly_damaging(0.663) TCGA-MJ-A68J-01 20 13279761 13279761 C T ISM1 Silent p.D350D 0.37 TCGA-MJ-A68J-01 20 34240440 34240440 G A RBM12 3'UTR 0.38 TCGA-MJ-A68J-01 2 27804402 27804402 C A C2orf16 Missense_Mutation p.R1655S 0.33 tolerated(0.08) benign(0.091) TCGA-MJ-A68J-01 2 75720315 75720315 T A EVA1A 3'UTR 0.39 TCGA-MJ-A68J-01 3 187447042 187447042 T C BCL6 Missense_Mutation p.N384S 0.06 deleterious(0.03) benign(0.026) TCGA-MJ-A68J-01 5 128302184 128302184 C T SLC27A6 Silent p.F118F 0.29 TCGA-MJ-A68J-01 7 2953040 2953040 C T CARD11 Missense_Mutation p.R967H 0.34 tolerated(0.15) benign(0.001) TCGA-MJ-A68J-01 X 100646748 100646748 C T RPL36A-HNRNPH2 Missense_Mutation p.R50W 0.31 tolerated_low_confidence(0.08) benign(0.066) TCGA-MJ-A850-01 11 56344977 56344977 G T OR5M10 Missense_Mutation p.S74Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-MJ-A850-01 11 62767307 62767307 G A SLC22A8 Missense_Mutation p.R149C 0.40 deleterious(0.01) probably_damaging(1) TCGA-MJ-A850-01 13 76457395 76457395 T A C13orf45 3'UTR 0.48 TCGA-MJ-A850-01 14 50796870 50796870 G A CDKL1 Silent p.S333S 0.37 TCGA-MJ-A850-01 16 683788 683788 G A WFIKKN1 Missense_Mutation p.E460K 0.54 deleterious(0.01) possibly_damaging(0.57) TCGA-MJ-A850-01 16 88809844 88809844 A C PIEZO1 Intron 0.36 TCGA-MJ-A850-01 17 30552455 30552456 - A RHOT1 3'UTR 0.09 TCGA-MJ-A850-01 17 66988407 66988407 G A ABCA9 Missense_Mutation p.P1209S 0.36 deleterious(0.02) possibly_damaging(0.856) TCGA-MJ-A850-01 17 78111251 78111251 G A EIF4A3 Missense_Mutation p.S306L 0.37 tolerated(0.05) possibly_damaging(0.561) TCGA-MJ-A850-01 17 78337533 78337533 C T RNF213 Missense_Mutation p.S3898F 0.50 probably_damaging(0.982) TCGA-MJ-A850-01 18 29110997 29110997 C T DSG2 Silent p.V354V 0.08 TCGA-MJ-A850-01 1 225525169 225525169 A G DNAH14 Missense_Mutation p.M2563V 0.48 tolerated(0.48) benign(0.072) TCGA-MJ-A850-01 1 84815493 84815493 C T SAMD13 3'UTR 0.46 TCGA-MJ-A850-01 20 32255034 32255034 T C ACTL10 5'UTR 0.68 TCGA-MJ-A850-01 22 32756308 32756308 G A RFPL3 Missense_Mutation p.R148Q 0.10 tolerated(0.2) benign(0.004) TCGA-MJ-A850-01 2 179598041 179598041 C T TTN Missense_Mutation p.D5327N 0.27 TCGA-MJ-A850-01 2 179721056 179721057 - T CCDC141 Frame_Shift_Ins p.N931Kfs*2 0.19 TCGA-MJ-A850-01 2 242755771 242755771 G T NEU4 Silent p.V43V 0.26 TCGA-MJ-A850-01 2 38971478 38971478 T C SRSF7 3'UTR 0.04 TCGA-MJ-A850-01 3 88193336 88193336 C G ZNF654 3'UTR 0.42 TCGA-MJ-A850-01 5 10973228 10973228 G A CTNND2 3'UTR 0.54 TCGA-MJ-A850-01 5 149001584 149001584 G T ARHGEF37 Missense_Mutation p.A432S 0.25 deleterious(0.05) possibly_damaging(0.571) TCGA-MJ-A850-01 5 167622271 167622271 C T TENM2 Silent p.Y957Y 0.39 TCGA-MJ-A850-01 6 167417614 167417614 A T FGFR1OP Intron 0.39 TCGA-MJ-A850-01 6 168999641 168999641 G A SMOC2 Missense_Mutation p.V272I 0.37 deleterious(0.01) probably_damaging(0.93) TCGA-MJ-A850-01 7 142569542 142569542 C T TRPV6 Missense_Mutation p.R699Q 0.45 deleterious(0.01) probably_damaging(0.991) TCGA-MJ-A850-01 8 30705004 30705004 G A TEX15 Silent p.N510N 0.27 TCGA-MJ-A850-01 8 75765829 75765829 T C PI15 3'UTR 0.09 TCGA-MJ-A850-01 9 104449124 104449124 C T GRIN3A Missense_Mutation p.R353H 0.57 tolerated(1) benign(0) TCGA-MJ-A850-01 9 35649809 35649809 G A SIT1 3'UTR 0.08 TCGA-MJ-A850-01 X 153050276 153050276 C T SRPK3 Silent p.Y440Y 0.08 TCGA-MO-A47P-01 11 108119780 108119780 A C ATM Missense_Mutation p.I396L 0.14 tolerated(0.61) benign(0.008) TCGA-MO-A47P-01 12 44176276 44176276 A T IRAK4 Missense_Mutation p.I370F 0.26 deleterious(0.01) probably_damaging(0.909) TCGA-MO-A47P-01 16 17197957 17197957 G A XYLT1 3'UTR 0.23 TCGA-MO-A47P-01 16 2110734 2110734 A - TSC2 Frame_Shift_Del p.K347Rfs*16 0.37 TCGA-MO-A47P-01 16 28892332 28892332 G A ATP2A1 Missense_Mutation p.V106I 0.27 tolerated(0.07) probably_damaging(0.991) TCGA-MO-A47P-01 18 672908 672908 G C TYMS Missense_Mutation p.V285L 0.36 tolerated(0.11) benign(0.271) TCGA-MO-A47P-01 19 50339495 50339495 G T MED25 Missense_Mutation p.V660L 0.16 deleterious_low_confidence(0.02) benign(0.417) TCGA-MO-A47P-01 1 153719547 153719547 G A INTS3 Splice_Site p.X144_splice 0.25 TCGA-MO-A47P-01 1 94497573 94497573 C T ABCA4 Missense_Mutation p.V1297I 0.29 tolerated(0.5) benign(0.001) TCGA-MO-A47P-01 20 31677358 31677358 G A BPIFB4 Missense_Mutation p.V349M 0.26 tolerated(0.2) possibly_damaging(0.884) TCGA-MO-A47P-01 2 173355851 173355865 GTAAGTATTTTTCAA - ITGA6 Splice_Site p.X926_splice 0.12 TCGA-MO-A47P-01 3 185304070 185304070 C A SENP2 5'UTR 0.23 TCGA-MO-A47P-01 3 64143025 64143025 T C PRICKLE2 Missense_Mutation p.N138S 0.45 tolerated(0.1) benign(0.009) TCGA-MO-A47P-01 7 136848888 136848888 G C hsa-mir-490 Intron 0.29 TCGA-MO-A47P-01 8 76472645 76472645 C T HNF4G Missense_Mutation p.T387I 0.37 tolerated(0.26) benign(0.011) TCGA-MO-A47R-01 11 104819368 104819368 C T CASP4 Missense_Mutation p.A273T 0.30 tolerated(0.12) benign(0.081) TCGA-MO-A47R-01 11 6007874 6007874 G T OR52L1 Missense_Mutation p.A96E 0.31 deleterious(0) possibly_damaging(0.535) TCGA-MO-A47R-01 11 69466030 69466030 G A CCND1 Missense_Mutation p.V290M 0.37 deleterious(0) probably_damaging(0.999) TCGA-MO-A47R-01 11 94801505 94801505 A T SRSF8 3'UTR 0.36 TCGA-MO-A47R-01 12 101295493 101295493 G A ANO4 5'UTR 0.14 TCGA-MO-A47R-01 12 13128328 13128328 G A HEBP1 Missense_Mutation p.R162W 0.20 deleterious(0.01) possibly_damaging(0.806) TCGA-MO-A47R-01 12 64841957 64841957 A G XPOT 3'UTR 0.22 TCGA-MO-A47R-01 13 19480667 19480667 C T LINC00408 RNA 0.83 TCGA-MO-A47R-01 13 19753654 19753654 T C TUBA3C Missense_Mutation p.N18S 0.48 deleterious_low_confidence(0.03) benign(0.025) TCGA-MO-A47R-01 13 32903601 32903601 A - BRCA2 Frame_Shift_Del p.T219Lfs*11 0.29 TCGA-MO-A47R-01 16 11016348 11016348 G A CIITA Splice_Site p.X1106_splice 0.30 TCGA-MO-A47R-01 16 70595541 70595541 C G SF3B3 Silent p.A714A 0.53 TCGA-MO-A47R-01 17 18414858 18414858 A T USP32P2 RNA 0.19 TCGA-MO-A47R-01 17 40950489 40950489 T C COA3 Missense_Mutation p.I71V 0.26 deleterious(0.03) possibly_damaging(0.553) TCGA-MO-A47R-01 17 70119794 70119794 C A SOX9 Missense_Mutation p.P266T 0.10 tolerated(0.06) possibly_damaging(0.529) TCGA-MO-A47R-01 17 76567092 76567092 C T DNAH17 Missense_Mutation p.V286M 0.33 benign(0.155) TCGA-MO-A47R-01 17 8134669 8134669 G A CTC1 Missense_Mutation p.S865F 0.32 deleterious(0.01) possibly_damaging(0.812) TCGA-MO-A47R-01 18 211617 211617 A G USP14 3'UTR 0.15 TCGA-MO-A47R-01 19 40902642 40902642 C T PRX Silent p.P539P 0.35 TCGA-MO-A47R-01 19 43262153 43262153 C T PSG8 Splice_Site p.X237_splice 0.30 TCGA-MO-A47R-01 1 114455666 114455666 T C DCLRE1B 3'UTR 0.20 TCGA-MO-A47R-01 1 152281987 152281987 G A FLG Missense_Mutation p.S1792F 0.28 possibly_damaging(0.485) TCGA-MO-A47R-01 1 224139767 224139767 A G RP11-504P24.8 RNA 0.36 TCGA-MO-A47R-01 1 228111953 228111954 - C WNT9A Frame_Shift_Ins p.C168Lfs*6 0.34 TCGA-MO-A47R-01 1 23636715 23636715 T C HNRNPR 3'UTR 0.50 TCGA-MO-A47R-01 1 25815701 25815701 G T TMEM57 Nonsense_Mutation p.E512* 0.27 TCGA-MO-A47R-01 1 79402057 79402057 T C ELTD1 Missense_Mutation p.H267R 0.47 tolerated(0.3) benign(0.012) TCGA-MO-A47R-01 21 46233792 46233792 C G SUMO3 Intron 0.35 TCGA-MO-A47R-01 22 18310466 18310466 C A MICAL3 Missense_Mutation p.R1046L 0.25 benign(0.27) TCGA-MO-A47R-01 22 40139965 40139965 C A ENTHD1 Nonsense_Mutation p.E515* 0.41 TCGA-MO-A47R-01 2 152581369 152581369 A C NEB Splice_Site p.X169_splice 0.43 TCGA-MO-A47R-01 2 25966595 25966595 A T ASXL2 Missense_Mutation p.S871T 0.22 tolerated_low_confidence(0.5) benign(0.024) TCGA-MO-A47R-01 2 70188027 70188027 T C ASPRV1 Missense_Mutation p.K265R 0.22 deleterious(0.03) probably_damaging(0.971) TCGA-MO-A47R-01 2 99012463 99012463 G A CNGA3 Missense_Mutation p.R277H 0.42 deleterious(0) probably_damaging(0.999) TCGA-MO-A47R-01 3 111681011 111681011 C T PHLDB2 Missense_Mutation p.R977C 0.43 deleterious(0) probably_damaging(0.982) TCGA-MO-A47R-01 3 143708927 143708927 C G C3orf58 3'UTR 0.21 TCGA-MO-A47R-01 3 178947119 178947119 G A PIK3CA Missense_Mutation p.R852Q 0.42 tolerated(0.35) benign(0.075) TCGA-MO-A47R-01 3 45944248 45944248 G A CCR9 3'UTR 0.45 TCGA-MO-A47R-01 4 155219572 155219572 T C DCHS2 Missense_Mutation p.N1510S 0.34 deleterious(0.02) possibly_damaging(0.888) TCGA-MO-A47R-01 4 15690018 15690018 G A FAM200B Missense_Mutation p.R473K 0.33 deleterious(0.03) benign(0.009) TCGA-MO-A47R-01 5 59284463 59284463 A G PDE4D Missense_Mutation p.S42P 0.26 tolerated_low_confidence(0.31) benign(0.259) TCGA-MO-A47R-01 6 126081232 126081232 A G HEY2 3'UTR 0.23 TCGA-MO-A47R-01 6 160169572 160169572 G A WTAP Intron 0.25 TCGA-MO-A47R-01 6 32724414 32724414 C A HLA-DQB2 Intron 0.13 TCGA-MO-A47R-01 7 104747888 104747889 - A KMT2E Frame_Shift_Ins p.T997Dfs*8 0.27 TCGA-MO-A47R-01 7 135302372 135302372 C T NUP205 Missense_Mutation p.A1238V 0.21 tolerated(0.28) possibly_damaging(0.643) TCGA-MO-A47R-01 8 124253560 124253560 G C C8orf76 Silent p.G9G 0.36 TCGA-MO-A47R-01 8 124796721 124796721 G T FAM91A1 Nonsense_Mutation p.E239* 0.19 TCGA-MO-A47R-01 8 25168026 25168026 C G DOCK5 Silent p.G432G 0.24 TCGA-MO-A47R-01 8 28651360 28651360 T C INTS9 Missense_Mutation p.N334S 0.32 tolerated(0.05) benign(0.164) TCGA-MO-A47R-01 9 123902916 123902916 T C CNTRL Intron 0.29 TCGA-N1-A6IA-01 11 45117420 45117420 T A PRDM11 Missense_Mutation p.C22S 0.46 deleterious_low_confidence(0.04) benign(0) TCGA-N1-A6IA-01 11 610995 610995 G C PHRF1 Missense_Mutation p.E1572D 0.46 deleterious(0) possibly_damaging(0.801) TCGA-N1-A6IA-01 11 66063855 66063855 A G TMEM151A 3'UTR 0.44 TCGA-N1-A6IA-01 11 71806419 71806419 C G LRTOMT Intron 0.23 TCGA-N1-A6IA-01 12 95694454 95694454 C T VEZT 3'UTR 0.41 TCGA-N1-A6IA-01 14 75248591 75248591 T C YLPM1 Silent p.P615P 0.12 TCGA-N1-A6IA-01 15 35083451 35083451 A C ACTC1 Missense_Mutation p.M285R 0.18 deleterious_low_confidence(0.04) benign(0.328) TCGA-N1-A6IA-01 15 42153620 42153622 TAG - SPTBN5 In_Frame_Del p.L2604del 0.41 TCGA-N1-A6IA-01 16 23073513 23073513 G T USP31 3'UTR 0.15 TCGA-N1-A6IA-01 16 2983865 2983865 C G FLYWCH1 Silent p.T465T 0.35 TCGA-N1-A6IA-01 16 3298968 3298968 G A MEFV Silent p.L433L 0.50 TCGA-N1-A6IA-01 16 89703959 89703959 C T DPEP1 Silent p.A284A 0.34 TCGA-N1-A6IA-01 17 18082113 18082113 C T MYO15A Missense_Mutation p.H3508Y 0.24 unknown(0) TCGA-N1-A6IA-01 17 3336989 3336989 A C OR1E2 Missense_Mutation p.I49M 0.77 deleterious(0) possibly_damaging(0.86) TCGA-N1-A6IA-01 17 45700019 45700019 G T NPEPPS 3'UTR 0.15 TCGA-N1-A6IA-01 17 66537102 66537103 GA - FAM20A Intron 0.33 TCGA-N1-A6IA-01 17 7578284 7578284 C - TP53 Frame_Shift_Del p.A189Pfs*58 0.45 TCGA-N1-A6IA-01 17 9083207 9083207 G C NTN1 Missense_Mutation p.G431R 0.14 deleterious(0) probably_damaging(1) TCGA-N1-A6IA-01 18 30517983 30517983 C T CCDC178 Missense_Mutation p.D866N 0.22 tolerated(0.08) benign(0.177) TCGA-N1-A6IA-01 19 13084213 13084213 G C DAND5 Missense_Mutation p.R112P 0.20 deleterious(0.03) benign(0.394) TCGA-N1-A6IA-01 19 14992099 14992099 C A OR7A17 Missense_Mutation p.L23F 0.83 deleterious_low_confidence(0.01) benign(0.12) TCGA-N1-A6IA-01 19 16643459 16643459 G A CHERP Silent p.F208F 0.81 TCGA-N1-A6IA-01 19 17918638 17918638 C A B3GNT3 Silent p.R8R 0.14 TCGA-N1-A6IA-01 19 4433417 4433417 G C CHAF1A Missense_Mutation p.D852H 0.31 deleterious(0) probably_damaging(0.971) TCGA-N1-A6IA-01 1 10383993 10383993 C T KIF1B Missense_Mutation p.P758S 0.27 tolerated(0.12) benign(0.028) TCGA-N1-A6IA-01 1 147084929 147084929 C T BCL9 Nonsense_Mutation p.R101* 0.14 TCGA-N1-A6IA-01 1 159277654 159277654 A G FCER1A Missense_Mutation p.I236V 0.58 tolerated(0.15) benign(0.021) TCGA-N1-A6IA-01 1 209969876 209969876 T A IRF6 Nonsense_Mutation p.K66* 0.33 TCGA-N1-A6IA-01 1 229606361 229606361 G C NUP133 Missense_Mutation p.S681C 0.29 tolerated(0.12) possibly_damaging(0.455) TCGA-N1-A6IA-01 1 32706857 32706857 A T MTMR9LP RNA 0.17 TCGA-N1-A6IA-01 1 39888564 39888564 G T MACF1 Nonsense_Mutation p.E3319* 0.24 TCGA-N1-A6IA-01 20 31611439 31611439 G A BPIFB2 3'UTR 0.49 TCGA-N1-A6IA-01 20 35090906 35090906 C A DLGAP4 Intron 0.07 TCGA-N1-A6IA-01 20 57829601 57829601 A T ZNF831 Missense_Mutation p.R1613W 0.27 deleterious(0.02) benign(0.24) TCGA-N1-A6IA-01 2 215274880 215274880 G A SPAG16 Silent p.Q579Q 0.12 TCGA-N1-A6IA-01 2 232577666 232577666 A G PTMA 3'UTR 0.11 TCGA-N1-A6IA-01 2 55882064 55882064 C - PNPT1 Frame_Shift_Del p.C489Lfs*5 0.19 TCGA-N1-A6IA-01 2 56612793 56612793 G C CCDC85A 3'UTR 0.10 TCGA-N1-A6IA-01 2 95847774 95847774 A G ZNF2 Missense_Mutation p.T401A 0.15 tolerated(0.37) benign(0.004) TCGA-N1-A6IA-01 3 49700331 49700331 G T BSN Missense_Mutation p.E3580D 0.38 unknown(0) TCGA-N1-A6IA-01 4 40108621 40108621 C T N4BP2 Missense_Mutation p.A492V 0.50 deleterious(0) probably_damaging(1) TCGA-N1-A6IA-01 5 133308469 133308469 T G VDAC1 Missense_Mutation p.Q282P 0.12 deleterious(0) benign(0.001) TCGA-N1-A6IA-01 5 172563566 172563566 T C CREBRF 3'UTR 0.18 TCGA-N1-A6IA-01 6 30104709 30104709 C T TRIM40 5'Flank 0.31 TCGA-N1-A6IA-01 6 43128583 43128583 C T PTK7 Silent p.S1067S 0.36 TCGA-N1-A6IA-01 6 87725415 87725415 C T HTR1E Silent p.Y121Y 0.31 TCGA-N1-A6IA-01 7 50198818 50198818 C T C7orf72 3'UTR 0.10 TCGA-N1-A6IA-01 7 73471034 73471034 G A ELN Missense_Mutation p.A450T 0.20 unknown(0) TCGA-N1-A6IA-01 7 73654271 73654271 C T RFC2 Silent p.R230R 0.23 TCGA-N1-A6IA-01 8 110477443 110477443 G A PKHD1L1 Missense_Mutation p.M2794I 0.52 deleterious(0.02) benign(0.001) TCGA-N1-A6IA-01 8 11295631 11295631 G T C8orf12 Missense_Mutation p.E40D 0.19 tolerated_low_confidence(0.56) benign(0.398) TCGA-N1-A6IA-01 X 13338130 13338130 T C ATXN3L 5'UTR 0.43 TCGA-N1-A6IA-01 X 150577484 150577484 A G VMA21 3'UTR 0.16 TCGA-N1-A6IA-01 X 153044436 153044436 T A PLXNB3 Missense_Mutation p.L1914Q 0.38 deleterious(0) probably_damaging(0.997) TCGA-N1-A6IA-01 X 18258557 18258557 A C SCML2 3'UTR 0.16 TCGA-N1-A6IA-01 X 47511493 47511493 T G UXT Missense_Mutation p.H148P 0.43 deleterious(0.01) possibly_damaging(0.61) TCGA-PC-A5DK-01 11 125476332 125476332 C T STT3A Missense_Mutation p.S251F 0.42 deleterious(0) probably_damaging(0.999) TCGA-PC-A5DK-01 11 57584498 57584498 C G CTNND1 3'UTR 0.12 TCGA-PC-A5DK-01 11 65381016 65381016 A T MAP3K11 Missense_Mutation p.L71Q 0.06 deleterious(0) probably_damaging(0.995) TCGA-PC-A5DK-01 11 72946213 72946213 G A P2RY2 Missense_Mutation p.G337S 0.40 tolerated(0.43) benign(0.005) TCGA-PC-A5DK-01 12 58007532 58007532 C A ARHGEF25 Missense_Mutation p.Q220K 0.23 tolerated(0.29) benign(0.057) TCGA-PC-A5DK-01 12 9311088 9311088 C T PZP Silent p.T1074T 0.43 TCGA-PC-A5DK-01 15 72141307 72141307 C T MYO9A Missense_Mutation p.C2239Y 0.10 deleterious(0) benign(0.017) TCGA-PC-A5DK-01 16 89702773 89702773 G A DPEP1 Silent p.P113P 0.45 TCGA-PC-A5DK-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.63 deleterious(0) probably_damaging(1) TCGA-PC-A5DK-01 19 53762741 53762741 C G VN1R2 Missense_Mutation p.D371E 0.46 tolerated(0.23) possibly_damaging(0.456) TCGA-PC-A5DK-01 1 12921627 12921627 G A PRAMEF2 Missense_Mutation p.C473Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-PC-A5DK-01 1 42914153 42914153 C A ZMYND12 Missense_Mutation p.A137S 0.60 tolerated(0.08) benign(0.014) TCGA-PC-A5DK-01 1 53322695 53322695 C T ZYG11A Silent p.S94S 0.17 TCGA-PC-A5DK-01 22 31500342 31500344 ATG - SMTN In_Frame_Del p.M906del 0.45 TCGA-PC-A5DK-01 22 37524544 37524544 G A IL2RB Silent p.D416D 0.09 TCGA-PC-A5DK-01 2 11364484 11364484 T A ROCK2 Missense_Mutation p.H324L 0.12 tolerated(0.1) benign(0.219) TCGA-PC-A5DK-01 3 154859841 154859841 A T MME Missense_Mutation p.N340I 0.45 tolerated(0.06) benign(0.404) TCGA-PC-A5DK-01 3 42573777 42573777 A T VIPR1 Missense_Mutation p.Q321L 0.38 deleterious(0) probably_damaging(0.952) TCGA-PC-A5DK-01 4 104080391 104080391 C G CENPE Missense_Mutation p.G793R 0.17 possibly_damaging(0.779) TCGA-PC-A5DK-01 5 150488015 150488015 C T ANXA6 Splice_Site p.X594_splice 0.18 TCGA-PC-A5DK-01 6 139101104 139101104 G A CCDC28A Missense_Mutation p.G192R 0.41 deleterious(0.02) probably_damaging(1) TCGA-PC-A5DM-01 10 104228785 104228803 CCATGGGGCTGGGTCAGCC - TMEM180 Missense_Mutation p.M1_?7 0.35 TCGA-PC-A5DM-01 10 5958320 5958320 C T FBXO18 Silent p.F614F 0.27 TCGA-PC-A5DM-01 10 79741210 79741210 C T POLR3A Silent p.L1289L 0.47 TCGA-PC-A5DM-01 10 93397 93397 G A TUBB8 Missense_Mutation p.T312M 0.58 deleterious_low_confidence(0.01) possibly_damaging(0.787) TCGA-PC-A5DM-01 11 5809895 5809895 A G OR52N1 Missense_Mutation p.I51T 0.38 deleterious(0.01) possibly_damaging(0.721) TCGA-PC-A5DM-01 11 62768268 62768268 G T SLC22A8 Missense_Mutation p.L121M 0.19 tolerated(0.08) benign(0.422) TCGA-PC-A5DM-01 12 109577236 109577236 G A ACACB Missense_Mutation p.C9Y 0.83 deleterious_low_confidence(0) unknown(0) TCGA-PC-A5DM-01 12 21051368 21051368 A T SLCO1B3 Splice_Site p.X561_splice 0.33 TCGA-PC-A5DM-01 12 9161587 9161587 T A KLRG1 Missense_Mutation p.F125Y 0.44 tolerated(0.39) benign(0.004) TCGA-PC-A5DM-01 13 25463474 25463474 T A CENPJ Missense_Mutation p.K1094I 0.47 deleterious(0.01) benign(0.064) TCGA-PC-A5DM-01 14 71199365 71199365 C T MAP3K9 Silent p.S921S 0.54 TCGA-PC-A5DM-01 15 72968585 72968585 C T HIGD2B Missense_Mutation p.R44H 0.79 tolerated(0.18) benign(0.039) TCGA-PC-A5DM-01 15 79587621 79587621 A G ANKRD34C 3'UTR 0.19 TCGA-PC-A5DM-01 15 90128963 90128963 G T TICRR Missense_Mutation p.G401C 0.15 deleterious(0) possibly_damaging(0.873) TCGA-PC-A5DM-01 16 20702376 20702376 T A ACSM1 Silent p.V45V 0.26 TCGA-PC-A5DM-01 16 23491209 23491209 C A GGA2 Splice_Site p.X336_splice 0.21 TCGA-PC-A5DM-01 16 69005 69005 G C WASH4P 5'UTR 0.08 TCGA-PC-A5DM-01 17 11583157 11583157 T C DNAH9 Missense_Mutation p.V1146A 0.06 benign(0.271) TCGA-PC-A5DM-01 17 30183852 30183852 C G COPRS Missense_Mutation p.Q44H 0.32 deleterious_low_confidence(0.03) possibly_damaging(0.575) TCGA-PC-A5DM-01 17 37340097 37340097 C T CACNB1 Missense_Mutation p.E307K 0.51 deleterious(0.01) probably_damaging(0.994) TCGA-PC-A5DM-01 17 47300970 47300970 G A PHOSPHO1 3'UTR 0.32 TCGA-PC-A5DM-01 17 66041937 66041937 A C KPNA2 Missense_Mutation p.E466A 0.31 deleterious(0) benign(0.1) TCGA-PC-A5DM-01 17 74527656 74527656 C T CYGB Silent p.G87G 0.65 TCGA-PC-A5DM-01 17 8053306 8053306 C T PER1 Missense_Mutation p.C171Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-PC-A5DM-01 18 44190790 44190790 G C LOXHD1 Missense_Mutation p.I236M 0.87 tolerated(0.05) possibly_damaging(0.844) TCGA-PC-A5DM-01 19 18182934 18182934 C T IL12RB1 Missense_Mutation p.D337N 0.35 tolerated(0.55) benign(0.012) TCGA-PC-A5DM-01 19 37464464 37464464 G T ZNF568 5'UTR 0.20 TCGA-PC-A5DM-01 19 47151823 47151823 G A DACT3 Silent p.F602F 0.92 TCGA-PC-A5DM-01 19 59093284 59093284 C T CENPBD1P1 Intron 0.18 TCGA-PC-A5DM-01 19 59093512 59093512 C T CENPBD1P1 Intron 0.23 TCGA-PC-A5DM-01 1 161179072 161179072 C T NDUFS2 Silent p.I161I 0.28 TCGA-PC-A5DM-01 1 171621534 171621534 T C MYOC Missense_Mutation p.N73S 0.64 tolerated_low_confidence(0.05) benign(0.009) TCGA-PC-A5DM-01 1 18149795 18149795 G T ACTL8 Missense_Mutation p.V98L 0.26 deleterious(0) possibly_damaging(0.905) TCGA-PC-A5DM-01 1 237670025 237670025 C T RYR2 Missense_Mutation p.H877Y 0.85 probably_damaging(0.91) TCGA-PC-A5DM-01 1 25712200 25712200 A T RHCE Splice_Site p.X358_splice 0.32 TCGA-PC-A5DM-01 1 75681501 75681501 T A SLC44A5 Nonsense_Mutation p.R556* 0.53 TCGA-PC-A5DM-01 1 7723490 7723490 G A CAMTA1 Missense_Mutation p.G295R 0.25 deleterious(0) probably_damaging(1) TCGA-PC-A5DM-01 22 22697817 22697817 C T IGLV9-49 Silent p.A35A 0.28 TCGA-PC-A5DM-01 22 25131832 25131832 A G PIWIL3 Missense_Mutation p.S493P 0.22 deleterious(0.01) benign(0.36) TCGA-PC-A5DM-01 22 35683342 35683342 T A HMGXB4 Silent p.I455I 0.34 TCGA-PC-A5DM-01 22 39357538 39357538 C T APOBEC3A Silent p.A107A 0.58 TCGA-PC-A5DM-01 2 102315000 102315000 G T MAP4K4 Missense_Mutation p.K41N 0.36 deleterious_low_confidence(0) unknown(0) TCGA-PC-A5DM-01 2 107007517 107007517 A G PLGLA RNA 0.07 TCGA-PC-A5DM-01 2 141460072 141460072 C T LRP1B Missense_Mutation p.R2025H 0.83 benign(0) TCGA-PC-A5DM-01 3 123166519 123166519 C T ADCY5 Missense_Mutation p.A292T 0.52 tolerated(0.25) benign(0.107) TCGA-PC-A5DM-01 3 48664427 48664427 G A SLC26A6 Missense_Mutation p.A652V 0.38 tolerated(0.24) benign(0.02) TCGA-PC-A5DM-01 4 115544604 115544604 T G UGT8 Missense_Mutation p.L190V 0.24 deleterious(0.04) benign(0.43) TCGA-PC-A5DM-01 4 70346624 70346624 T G UGT2B4 Missense_Mutation p.K439Q 0.17 deleterious(0) probably_damaging(0.985) TCGA-PC-A5DM-01 6 10530032 10530032 C T GCNT2 Silent p.P296P 0.72 TCGA-PC-A5DM-01 6 161026226 161026226 G A LPA Nonsense_Mutation p.Q933* 0.04 TCGA-PC-A5DM-01 6 50813786 50813786 G A TFAP2B 3'UTR 0.39 TCGA-PC-A5DM-01 6 84563814 84563814 A C RIPPLY2 Splice_Site p.X59_splice 0.39 TCGA-PC-A5DM-01 6 96652874 96652874 T C FUT9 3'UTR 0.22 TCGA-PC-A5DM-01 7 131844366 131844366 T G PLXNA4 Missense_Mutation p.N1509T 0.05 deleterious(0.04) possibly_damaging(0.743) TCGA-PC-A5DM-01 7 92825146 92825146 A G HEPACAM2 Missense_Mutation p.S424P 0.18 tolerated(1) benign(0) TCGA-PC-A5DM-01 9 139760646 139760646 G C EDF1 Missense_Mutation p.A22G 0.83 tolerated(0.14) possibly_damaging(0.493) TCGA-PC-A5DM-01 9 74764475 74764475 C A GDA 5'UTR 0.60 TCGA-PC-A5DM-01 9 77598707 77598707 C A C9orf41 Missense_Mutation p.L402F 0.30 tolerated(1) benign(0.002) TCGA-PC-A5DM-01 9 99262780 99262780 G A CDC14B 3'UTR 0.33 TCGA-PC-A5DM-01 X 76939007 76939014 TAGCTGTA - ATRX Frame_Shift_Del p.T579Sfs*8 0.92 TCGA-PC-A5DM-01 Y 4968029 4968029 G A PCDH11Y Missense_Mutation p.V804M 0.85 deleterious(0) probably_damaging(0.927) TCGA-PC-A5DN-01 10 93902837 93902837 C G CPEB3 Missense_Mutation p.V468L 0.33 tolerated(0.09) benign(0.199) TCGA-PC-A5DN-01 11 1085815 1085815 G T MUC2 Silent p.T912T 0.39 TCGA-PC-A5DN-01 11 56344717 56344717 G C OR5M10 Missense_Mutation p.L161V 0.07 tolerated(0.51) benign(0.074) TCGA-PC-A5DN-01 12 106460789 106460789 G A NUAK1 Missense_Mutation p.P593S 0.08 tolerated(0.08) benign(0.045) TCGA-PC-A5DN-01 12 119968845 119968845 C A CCDC60 Missense_Mutation p.P510T 0.77 deleterious(0) probably_damaging(1) TCGA-PC-A5DN-01 12 32795858 32795858 C T FGD4 3'UTR 0.23 TCGA-PC-A5DN-01 12 46298917 46298917 G T ARID2 3'UTR 0.21 TCGA-PC-A5DN-01 12 49426307 49426307 C T KMT2D Missense_Mutation p.E4061K 0.04 unknown(0) TCGA-PC-A5DN-01 12 49426450 49426450 C T KMT2D Missense_Mutation p.G4013E 0.03 unknown(0) TCGA-PC-A5DN-01 12 49440424 49440424 G A KMT2D Silent p.L1462L 0.04 TCGA-PC-A5DN-01 12 57500521 57500521 G A STAT6 Missense_Mutation p.H145Y 0.04 tolerated(0.61) benign(0.121) TCGA-PC-A5DN-01 12 57501043 57501043 G C STAT6 Missense_Mutation p.Q104E 0.04 tolerated(0.48) benign(0.055) TCGA-PC-A5DN-01 12 57584739 57584739 G A LRP1 Missense_Mutation p.D2395N 0.06 probably_damaging(1) TCGA-PC-A5DN-01 12 70206595 70206595 C T RAB3IP Missense_Mutation p.H406Y 0.07 tolerated(0.41) benign(0.033) TCGA-PC-A5DN-01 12 80648848 80648848 C A OTOGL Missense_Mutation p.H481Q 0.05 deleterious(0) probably_damaging(0.998) TCGA-PC-A5DN-01 15 25299398 25299398 G C SNORD116-2 RNA 0.20 TCGA-PC-A5DN-01 15 42278120 42278120 A T PLA2G4E Missense_Mutation p.S707T 0.11 tolerated(1) benign(0.229) TCGA-PC-A5DN-01 15 54307904 54307904 T G UNC13C Nonsense_Mutation p.L935* 0.14 TCGA-PC-A5DN-01 16 20482862 20482862 A G ACSM2A Missense_Mutation p.T249A 0.12 deleterious(0.03) benign(0.107) TCGA-PC-A5DN-01 16 55844440 55844440 C T CES1 Missense_Mutation p.R436Q 0.24 tolerated(0.08) possibly_damaging(0.451) TCGA-PC-A5DN-01 18 18566975 18566975 T C ROCK1 Missense_Mutation p.D747G 0.29 deleterious(0.02) probably_damaging(0.987) TCGA-PC-A5DN-01 19 1063802 1063802 T A ABCA7 Missense_Mutation p.L1964H 0.20 deleterious(0) probably_damaging(0.974) TCGA-PC-A5DN-01 19 19576217 19576218 - GAC GATAD2A In_Frame_Ins p.D23dup 0.32 TCGA-PC-A5DN-01 19 2933833 2933833 G A ZNF77 Missense_Mutation p.T431I 0.28 deleterious(0.01) probably_damaging(0.952) TCGA-PC-A5DN-01 19 38954158 38954158 C T RYR1 Silent p.T891T 0.30 TCGA-PC-A5DN-01 19 40363158 40363158 A G FCGBP Missense_Mutation p.L4971P 0.11 probably_damaging(0.986) TCGA-PC-A5DN-01 19 40729532 40729532 G A CNTD2 Intron 0.42 TCGA-PC-A5DN-01 19 51361292 51361292 G A KLK3 Missense_Mutation p.V72M 0.34 deleterious(0.03) benign(0.139) TCGA-PC-A5DN-01 19 51563252 51563252 C T KLK13 Missense_Mutation p.R113Q 0.17 tolerated(0.55) benign(0.006) TCGA-PC-A5DN-01 19 56904637 56904650 CGCCAGAAAGCGCA - ZNF582 Intron 0.41 TCGA-PC-A5DN-01 1 114184712 114184712 A T MAGI3 Missense_Mutation p.I514F 0.27 deleterious(0) possibly_damaging(0.813) TCGA-PC-A5DN-01 1 162569244 162569258 AGTTTAAATATCCAC - UAP1 3'UTR 0.38 TCGA-PC-A5DN-01 1 186277602 186277602 C T PRG4 Silent p.D917D 0.42 TCGA-PC-A5DN-01 1 20915751 20915751 C T CDA Silent p.L43L 0.42 TCGA-PC-A5DN-01 1 235594072 235594072 G A TBCE Missense_Mutation p.V205I 0.06 tolerated(0.31) benign(0.002) TCGA-PC-A5DN-01 20 30662496 30662496 G A HCK Missense_Mutation p.A134T 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-PC-A5DN-01 21 14778717 14778717 G T MIR3156-3 RNA 0.50 TCGA-PC-A5DN-01 2 209302606 209302606 G A PTH2R Silent p.K137K 0.37 TCGA-PC-A5DN-01 2 21234572 21234572 C A APOB Missense_Mutation p.S1723I 0.10 probably_damaging(0.994) TCGA-PC-A5DN-01 2 2328430 2328430 C T MYT1L Intron 0.40 TCGA-PC-A5DN-01 2 27170737 27170737 C - DPYSL5 3'UTR 0.18 TCGA-PC-A5DN-01 2 77745759 77745759 G A LRRTM4 Silent p.G412G 0.20 TCGA-PC-A5DN-01 3 120114373 120114373 G T FSTL1 3'UTR 0.19 TCGA-PC-A5DN-01 3 142511714 142511714 C G TRPC1 Missense_Mutation p.L496V 0.29 deleterious(0.01) benign(0.042) TCGA-PC-A5DN-01 3 148459421 148459422 AT - AGTR1 Frame_Shift_Del p.I201Tfs*26 0.19 TCGA-PC-A5DN-01 3 19576123 19576123 G A KCNH8 3'UTR 0.27 TCGA-PC-A5DN-01 3 38950624 38950624 G A SCN11A Missense_Mutation p.S388F 0.11 deleterious(0) probably_damaging(1) TCGA-PC-A5DN-01 3 46245242 46245242 G C CCR1 Missense_Mutation p.P188R 0.18 deleterious(0) probably_damaging(0.987) TCGA-PC-A5DN-01 4 10533308 10533308 G A CLNK Intron 0.45 TCGA-PC-A5DN-01 4 85742335 85742335 T C WDFY3 Missense_Mutation p.D498G 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-PC-A5DN-01 5 101631937 101631937 C A SLCO4C1 Missense_Mutation p.L10F 0.36 tolerated_low_confidence(0.14) benign(0.361) TCGA-PC-A5DN-01 5 140536810 140536813 AGAG - PCDHB17 Frame_Shift_Del p.E413Afs*19 0.38 TCGA-PC-A5DN-01 5 145428732 145428732 G T SH3RF2 Missense_Mutation p.G416C 0.36 deleterious(0) probably_damaging(0.999) TCGA-PC-A5DN-01 5 169435513 169435513 T A DOCK2 Missense_Mutation p.Y1029N 0.26 deleterious(0) probably_damaging(0.929) TCGA-PC-A5DN-01 5 180582465 180582465 G T OR2V2 Missense_Mutation p.V175L 0.29 deleterious(0.01) benign(0.116) TCGA-PC-A5DN-01 5 95223293 95223293 C G ELL2 3'UTR 0.21 TCGA-PC-A5DN-01 6 28121130 28121130 G T ZKSCAN8 Missense_Mutation p.A358S 0.21 tolerated(0.22) possibly_damaging(0.762) TCGA-PC-A5DN-01 6 42141410 42141410 A G GUCA1A Missense_Mutation p.Q20R 0.05 tolerated(0.2) benign(0.005) TCGA-PC-A5DN-01 6 88854824 88854824 G C CNR1 Missense_Mutation p.P57R 0.35 deleterious_low_confidence(0.02) benign(0.157) TCGA-PC-A5DN-01 7 112415372 112415372 G A TMEM168 Missense_Mutation p.P377L 0.30 tolerated(0.15) benign(0.002) TCGA-PC-A5DN-01 7 11457208 11457208 C T THSD7A Missense_Mutation p.G1136S 0.17 tolerated(0.13) possibly_damaging(0.852) TCGA-PC-A5DN-01 7 17832272 17832272 G A SNX13 3'UTR 0.32 TCGA-PC-A5DN-01 7 73610590 73610590 G C EIF4H 3'UTR 0.29 TCGA-PC-A5DN-01 8 140998965 140998965 C G TRAPPC9 Missense_Mutation p.A1025P 0.10 tolerated(0.31) benign(0.01) TCGA-PC-A5DN-01 8 82626245 82626245 G A ZFAND1 Nonsense_Mutation p.R130* 0.40 TCGA-PC-A5DN-01 9 114919796 114919797 - GAGG SUSD1 Frame_Shift_Ins p.R68Lfs*7 0.28 TCGA-PC-A5DN-01 9 19380122 19380122 A G RPS6 Intron 0.47 TCGA-PC-A5DN-01 9 43626984 43626984 G A SPATA31A6 Missense_Mutation p.S568F 0.04 tolerated(1) benign(0.003) TCGA-PC-A5DN-01 9 5361821 5361822 - ACC PLGRKT In_Frame_Ins p.W49dup 0.20 TCGA-PC-A5DN-01 9 90343553 90343553 G A CTSL Silent p.Q150Q 0.42 TCGA-PC-A5DN-01 9 95236911 95236911 T G ASPN Missense_Mutation p.D90A 0.33 deleterious(0) probably_damaging(1) TCGA-PC-A5DN-01 X 70823836 70823836 G T ACRC Missense_Mutation p.D237Y 0.33 unknown(0) TCGA-PC-A5DN-01 X 76875866 76875866 C G ATRX Missense_Mutation p.E1757Q 0.30 probably_damaging(1) TCGA-QC-A6FX-01 11 113660099 113660099 G A ATF4P4 RNA 0.21 TCGA-QC-A6FX-01 11 1270805 1270805 C T MUC5B Missense_Mutation p.P4232L 0.13 possibly_damaging(0.523) TCGA-QC-A6FX-01 11 607455 607455 C G PHRF1 Missense_Mutation p.L666V 0.08 tolerated(0.12) benign(0.108) TCGA-QC-A6FX-01 11 65413771 65413771 C T SIPA1 Missense_Mutation p.T448I 0.12 deleterious(0) benign(0.305) TCGA-QC-A6FX-01 11 67208722 67208722 G T CORO1B Intron 0.12 TCGA-QC-A6FX-01 11 67378983 67378983 G A NDUFV1 Silent p.A341A 0.47 TCGA-QC-A6FX-01 11 87024468 87024468 G A TMEM135 Missense_Mutation p.G313D 0.36 deleterious(0.04) possibly_damaging(0.894) TCGA-QC-A6FX-01 11 87882881 87882881 C - RAB38 Frame_Shift_Del p.E149Sfs*5 0.17 TCGA-QC-A6FX-01 12 81734962 81734962 C G PPFIA2 Missense_Mutation p.R763P 0.36 deleterious(0.01) benign(0.065) TCGA-QC-A6FX-01 13 111532021 111532021 G A ANKRD10 Missense_Mutation p.A409V 0.12 deleterious(0.01) possibly_damaging(0.521) TCGA-QC-A6FX-01 13 114290413 114290413 C T TFDP1 Missense_Mutation p.T270M 0.12 deleterious(0) probably_damaging(0.998) TCGA-QC-A6FX-01 14 21830470 21830470 G A SUPT16H Missense_Mutation p.S560F 0.10 deleterious(0.02) possibly_damaging(0.451) TCGA-QC-A6FX-01 14 22356615 22356615 G A TRAV12-2 Silent p.Q91Q 0.20 TCGA-QC-A6FX-01 14 93995662 93995662 T A UNC79 Silent p.L184L 0.35 TCGA-QC-A6FX-01 15 23890952 23890952 C T MAGEL2 Silent p.E43E 0.74 TCGA-QC-A6FX-01 15 24923532 24923532 T A NPAP1 Missense_Mutation p.F840I 0.23 tolerated(0.4) benign(0.133) TCGA-QC-A6FX-01 15 43893109 43893109 C T STRC Missense_Mutation p.R1602Q 0.21 tolerated(0.19) probably_damaging(0.996) TCGA-QC-A6FX-01 15 89744424 89744424 C T ABHD2 3'UTR 0.28 TCGA-QC-A6FX-01 16 28113177 28113177 C G XPO6 Silent p.L1012L 0.18 TCGA-QC-A6FX-01 16 3819196 3819196 G - CREBBP Frame_Shift_Del p.E1016Sfs*6 0.15 TCGA-QC-A6FX-01 16 61687551 61687551 G A CDH8 Silent p.G787G 0.21 TCGA-QC-A6FX-01 17 16722293 16722293 C G AC022596.6 RNA 0.10 TCGA-QC-A6FX-01 17 5241402 5241413 AAGACAAAATTA - RABEP1 In_Frame_Del p.D207_K210del 0.34 TCGA-QC-A6FX-01 17 74386260 74386260 C T UBE2O 3'UTR 0.24 TCGA-QC-A6FX-01 17 74387533 74387533 C G UBE2O Missense_Mutation p.E1124Q 0.28 tolerated(0.28) benign(0.067) TCGA-QC-A6FX-01 17 7577556 7577556 C G TP53 Missense_Mutation p.C242S 0.87 deleterious(0) probably_damaging(1) TCGA-QC-A6FX-01 17 79916829 79916829 C T NOTUM Nonsense_Mutation p.W172* 0.16 TCGA-QC-A6FX-01 18 70204165 70204165 A T CBLN2 3'UTR 0.27 TCGA-QC-A6FX-01 19 11457211 11457211 G A CCDC159 5'UTR 0.10 TCGA-QC-A6FX-01 19 1529789 1529789 A G PLK5 Silent p.R178R 0.06 TCGA-QC-A6FX-01 19 22271217 22271217 C G ZNF257 Missense_Mutation p.T222S 0.26 deleterious(0) benign(0.124) TCGA-QC-A6FX-01 19 31765928 31765928 C T TSHZ3 3'UTR 0.17 TCGA-QC-A6FX-01 19 36277466 36277466 C G ARHGAP33 Intron 0.21 TCGA-QC-A6FX-01 19 38959746 38959746 C T RYR1 Silent p.S1174S 0.24 TCGA-QC-A6FX-01 19 46093964 46093964 C T GPR4 3'UTR 0.22 TCGA-QC-A6FX-01 19 51986521 51986521 C G CEACAM18 Nonsense_Mutation p.Y369* 0.22 TCGA-QC-A6FX-01 1 100661633 100661633 C A DBT 3'UTR 0.14 TCGA-QC-A6FX-01 1 145532554 145532554 A G ITGA10 Missense_Mutation p.N336S 0.88 tolerated(0.08) probably_damaging(0.991) TCGA-QC-A6FX-01 1 21042109 21042109 G A KIF17 Silent p.G85G 0.21 TCGA-QC-A6FX-01 1 221874946 221874946 G A DUSP10 3'UTR 0.49 TCGA-QC-A6FX-01 1 237755055 237755055 A C RYR2 Missense_Mutation p.T1393P 0.23 benign(0.091) TCGA-QC-A6FX-01 1 23885512 23885512 T C ID3 Splice_Site p.X101_splice 0.41 TCGA-QC-A6FX-01 1 67891960 67891960 G A SERBP1 Nonsense_Mutation p.R108* 0.86 TCGA-QC-A6FX-01 20 61290029 61290029 C T SLCO4A1 Missense_Mutation p.A266V 0.15 deleterious(0.04) possibly_damaging(0.728) TCGA-QC-A6FX-01 21 22370751 22370751 C T NCAM2 5'UTR 0.14 TCGA-QC-A6FX-01 21 32598192 32598192 G A TIAM1 Silent p.H553H 0.17 TCGA-QC-A6FX-01 21 35474022 35474022 C T SLC5A3 3'UTR 0.15 TCGA-QC-A6FX-01 21 35474070 35474070 C T SLC5A3 3'UTR 0.23 TCGA-QC-A6FX-01 21 35474149 35474149 C T SLC5A3 3'UTR 0.27 TCGA-QC-A6FX-01 21 43411795 43411795 C T ZBTB21 Missense_Mutation p.A804T 0.16 tolerated(0.55) benign(0.021) TCGA-QC-A6FX-01 21 45858991 45858991 G A TRPM2 Silent p.K1403K 0.62 TCGA-QC-A6FX-01 21 46117740 46117740 C A KRTAP10-12 Silent p.R208R 0.15 TCGA-QC-A6FX-01 2 113286955 113286955 G A TTL 3'UTR 0.30 TCGA-QC-A6FX-01 2 178417110 178417110 C T TTC30B Missense_Mutation p.D128N 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-QC-A6FX-01 2 202483880 202483880 G A ALS2CR11 5'UTR 0.19 TCGA-QC-A6FX-01 2 204304534 204304534 G A RAPH1 Missense_Mutation p.R1127W 0.18 unknown(0) TCGA-QC-A6FX-01 2 217332750 217332750 C T SMARCAL1 Missense_Mutation p.T742M 0.17 deleterious(0.02) benign(0.026) TCGA-QC-A6FX-01 2 228110896 228110896 G A COL4A3 Intron 0.38 TCGA-QC-A6FX-01 3 154055871 154055871 C T GPR149 Missense_Mutation p.D605N 0.09 deleterious(0.04) possibly_damaging(0.791) TCGA-QC-A6FX-01 3 88101274 88101274 A G CGGBP1 3'UTR 0.59 TCGA-QC-A6FX-01 4 141888986 141888986 C T RNF150 Missense_Mutation p.G176R 0.23 deleterious(0) probably_damaging(1) TCGA-QC-A6FX-01 4 187004218 187004218 G A TLR3 Missense_Mutation p.E460K 0.83 tolerated(0.06) benign(0.084) TCGA-QC-A6FX-01 4 6055493 6055493 C G JAKMIP1 Intron 0.19 TCGA-QC-A6FX-01 5 141248186 141248186 G A PCDH1 Missense_Mutation p.S284F 0.61 tolerated(0.05) benign(0.254) TCGA-QC-A6FX-01 5 21854900 21854900 C A CDH12 Splice_Site p.X176_splice 0.28 TCGA-QC-A6FX-01 5 82818025 82818025 G A VCAN Silent p.E1300E 0.11 TCGA-QC-A6FX-01 6 116949368 116949368 C G RSPH4A Missense_Mutation p.L500V 0.38 deleterious(0.03) probably_damaging(0.957) TCGA-QC-A6FX-01 6 123892185 123892185 C T TRDN Missense_Mutation p.D39N 0.51 deleterious_low_confidence(0) unknown(0) TCGA-QC-A6FX-01 6 127518751 127518751 G A RSPO3 3'Flank 0.14 TCGA-QC-A6FX-01 6 136610944 136610944 C G BCLAF1 5'UTR 0.08 TCGA-QC-A6FX-01 7 103113039 103113039 C T RELN 3'UTR 0.10 TCGA-QC-A6FX-01 8 121275110 121275110 G T COL14A1 Missense_Mutation p.R958M 0.11 tolerated(0.06) benign(0.248) TCGA-QC-A6FX-01 8 144688241 144688241 C T PYCRL Silent p.Q223Q 0.10 TCGA-QC-A6FX-01 8 88885986 88885986 C T DCAF4L2 Missense_Mutation p.D72N 0.32 tolerated(0.26) benign(0.007) TCGA-QC-A6FX-01 9 98206399 98206399 T A PTCH1 3'UTR 0.05 TCGA-QC-A6FX-01 X 12736058 12736058 C T FRMPD4 Missense_Mutation p.A1038V 0.72 tolerated_low_confidence(0.42) benign(0.001) TCGA-QC-A7B5-01 10 100219044 100219044 C T HPSE2 3'UTR 0.35 TCGA-QC-A7B5-01 10 101716781 101716781 G A DNMBP Silent p.A150A 0.40 TCGA-QC-A7B5-01 10 103315432 103315432 C T BTRC 3'UTR 0.32 TCGA-QC-A7B5-01 10 103922310 103922310 C T NOLC1 3'UTR 0.14 TCGA-QC-A7B5-01 10 103989182 103989182 G A ELOVL3 3'UTR 0.13 TCGA-QC-A7B5-01 10 104122337 104122337 C T GBF1 Missense_Mutation p.L597F 0.12 tolerated(0.17) benign(0.089) TCGA-QC-A7B5-01 10 104393095 104393095 G A SUFU 3'UTR 0.38 TCGA-QC-A7B5-01 10 105215166 105215166 G A CALHM1 Silent p.T298T 0.22 TCGA-QC-A7B5-01 10 105215167 105215167 G A CALHM1 Missense_Mutation p.T298I 0.22 deleterious(0.01) benign(0.319) TCGA-QC-A7B5-01 10 105232893 105232893 G C CALHM3 3'UTR 0.16 TCGA-QC-A7B5-01 10 106166549 106166549 C T CCDC147 Nonsense_Mutation p.Q752* 0.16 TCGA-QC-A7B5-01 10 107016627 107016627 C T SORCS3 Silent p.L1130L 0.37 TCGA-QC-A7B5-01 10 107023210 107023210 T C SORCS3 3'UTR 0.18 TCGA-QC-A7B5-01 10 108337174 108337174 T A SORCS1 Intron 0.20 TCGA-QC-A7B5-01 10 111637563 111637563 G A XPNPEP1 Missense_Mutation p.A435V 0.13 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 10 112769129 112769129 C T SHOC2 Missense_Mutation p.L470F 0.24 deleterious(0) probably_damaging(0.967) TCGA-QC-A7B5-01 10 11372180 11372180 C T CELF2 Intron 0.42 TCGA-QC-A7B5-01 10 11374659 11374659 C T CELF2 3'UTR 0.25 TCGA-QC-A7B5-01 10 114194076 114194076 G A ZDHHC6 Silent p.G294G 0.32 TCGA-QC-A7B5-01 10 11805393 11805393 C T ECHDC3 Silent p.T254T 0.23 TCGA-QC-A7B5-01 10 118354011 118354011 G A PNLIPRP1 Intron 0.30 TCGA-QC-A7B5-01 10 119014803 119014803 G A SLC18A2 Missense_Mutation p.G239E 0.32 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 10 120792378 120792378 C T NANOS1 3'UTR 0.26 TCGA-QC-A7B5-01 10 121275051 121275051 G A RGS10 Silent p.H123H 0.44 TCGA-QC-A7B5-01 10 122659643 122659643 C T WDR11 Missense_Mutation p.S873F 0.31 tolerated(0.08) benign(0.002) TCGA-QC-A7B5-01 10 123996963 123996963 C T TACC2 Silent p.S2727S 0.17 TCGA-QC-A7B5-01 10 124457606 124457606 G A C10orf120 Silent p.T217T 0.23 TCGA-QC-A7B5-01 10 124516209 124516209 T C DMBT1P1 5'Flank 0.20 TCGA-QC-A7B5-01 10 124909209 124909209 C T HMX2 Missense_Mutation p.P131L 0.52 tolerated(0.13) benign(0.041) TCGA-QC-A7B5-01 10 126675601 126675601 C T ZRANB1 3'UTR 0.20 TCGA-QC-A7B5-01 10 127541727 127541727 C G BCCIP Missense_Mutation p.S295C 0.38 tolerated_low_confidence(0.09) unknown(0) TCGA-QC-A7B5-01 10 134012440 134012440 G A DPYSL4 Missense_Mutation p.G259E 0.34 tolerated(0.1) possibly_damaging(0.781) TCGA-QC-A7B5-01 10 134623946 134623946 G A TTC40 Missense_Mutation p.S2544L 0.33 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-QC-A7B5-01 10 134751129 134751129 C T TTC40 Missense_Mutation p.R196K 0.47 tolerated(1) benign(0.002) TCGA-QC-A7B5-01 10 134906509 134906509 A C GPR123 Intron 0.19 TCGA-QC-A7B5-01 10 134915806 134915806 G A GPR123 Intron 0.38 TCGA-QC-A7B5-01 10 135025212 135025212 C T KNDC1 Silent p.H1362H 0.14 TCGA-QC-A7B5-01 10 135025213 135025213 C T KNDC1 Silent p.L1363L 0.14 TCGA-QC-A7B5-01 10 135076717 135076717 A C ADAM8 Silent p.V806V 0.17 TCGA-QC-A7B5-01 10 135280808 135280808 C T SPRN Intron 0.47 TCGA-QC-A7B5-01 10 135350608 135350608 C T CYP2E1 Nonsense_Mutation p.R337* 0.12 TCGA-QC-A7B5-01 10 135440244 135440244 C T FRG2B Translation_Start_Site p.M1? 0.05 deleterious(0) possibly_damaging(0.888) TCGA-QC-A7B5-01 10 15161401 15161401 C T NMT2 Missense_Mutation p.E371K 0.31 tolerated(0.08) possibly_damaging(0.788) TCGA-QC-A7B5-01 10 15255778 15255778 G A FAM171A1 Silent p.V603V 0.27 TCGA-QC-A7B5-01 10 16526508 16526508 C T PTER Missense_Mutation p.P42L 0.26 tolerated(0.14) benign(0.022) TCGA-QC-A7B5-01 10 16955938 16955938 G A CUBN Missense_Mutation p.P2469S 0.36 deleterious(0.01) benign(0) TCGA-QC-A7B5-01 10 16960740 16960740 G A CUBN Missense_Mutation p.S2294F 0.35 deleterious(0) possibly_damaging(0.786) TCGA-QC-A7B5-01 10 17921739 17921739 G A MRC1L1 Missense_Mutation p.M875I 0.62 benign(0.012) TCGA-QC-A7B5-01 10 18827133 18827133 G A CACNB2 Missense_Mutation p.E443K 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 10 22619840 22619840 C T BMI1 3'UTR 0.19 TCGA-QC-A7B5-01 10 24874032 24874032 G A ARHGAP21 Missense_Mutation p.S1729L 0.20 tolerated(0.1) benign(0.102) TCGA-QC-A7B5-01 10 24889637 24889637 C T ARHGAP21 Missense_Mutation p.D1024N 0.48 deleterious(0.04) probably_damaging(0.995) TCGA-QC-A7B5-01 10 25877952 25877952 C T GPR158 Silent p.L590L 0.34 TCGA-QC-A7B5-01 10 25887096 25887096 C T GPR158 Silent p.S847S 0.14 TCGA-QC-A7B5-01 10 25887658 25887658 G A GPR158 Missense_Mutation p.E1035K 0.30 tolerated(0.05) benign(0.058) TCGA-QC-A7B5-01 10 28270465 28270465 G A ARMC4 Missense_Mutation p.S289L 0.19 deleterious(0.03) benign(0.01) TCGA-QC-A7B5-01 10 29839542 29839542 G A SVIL Missense_Mutation p.P271S 0.42 tolerated(0.8) benign(0.001) TCGA-QC-A7B5-01 10 31810575 31810575 C T ZEB1 Missense_Mutation p.S772F 0.39 deleterious(0) possibly_damaging(0.775) TCGA-QC-A7B5-01 10 37447469 37447469 C T ANKRD30A Missense_Mutation p.P563S 0.16 tolerated(0.84) benign(0.003) TCGA-QC-A7B5-01 10 42831524 42831524 C T RP11-313J2.1 RNA 0.40 TCGA-QC-A7B5-01 10 42905627 42905627 C T CCNYL2 RNA 0.19 TCGA-QC-A7B5-01 10 45496311 45496311 G A C10orf25 5'UTR 0.25 TCGA-QC-A7B5-01 10 45500203 45500203 C T ZNF22 3'UTR 0.18 TCGA-QC-A7B5-01 10 48416392 48416392 G A GDF2 Missense_Mutation p.S101L 0.20 deleterious(0) possibly_damaging(0.463) TCGA-QC-A7B5-01 10 5032129 5032129 C T AKR1C2 3'UTR 0.35 TCGA-QC-A7B5-01 10 50531798 50531798 A C C10orf71 Missense_Mutation p.Q403P 0.18 tolerated(0.11) probably_damaging(0.986) TCGA-QC-A7B5-01 10 50724596 50724596 G A ERCC6-PGBD3 Silent p.L657L 0.39 TCGA-QC-A7B5-01 10 50944182 50944182 C T OGDHL Silent p.E932E 0.39 TCGA-QC-A7B5-01 10 5242241 5242241 T C AKR1C4 Missense_Mutation p.V61A 0.32 deleterious(0) probably_damaging(0.956) TCGA-QC-A7B5-01 10 55583083 55583083 C T PCDH15 Missense_Mutation p.G1470E 0.24 deleterious_low_confidence(0.04) benign(0.009) TCGA-QC-A7B5-01 10 55719580 55719580 C T PCDH15 Missense_Mutation p.G1012R 0.33 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 10 5683863 5683863 C T ASB13 Silent p.K193K 0.25 TCGA-QC-A7B5-01 10 5932244 5932244 G A FBXO18 5'Flank 0.28 TCGA-QC-A7B5-01 10 5932245 5932245 G A FBXO18 5'Flank 0.28 TCGA-QC-A7B5-01 10 5959430 5959430 G A FBXO18 Silent p.L663L 0.34 TCGA-QC-A7B5-01 10 60573665 60573665 G A BICC1 Missense_Mutation p.D818N 0.43 deleterious(0) possibly_damaging(0.51) TCGA-QC-A7B5-01 10 61834561 61834561 C T ANK3 Silent p.K2026K 0.14 TCGA-QC-A7B5-01 10 68139051 68139051 C T CTNNA3 Missense_Mutation p.D531N 0.19 tolerated(0.05) unknown(0) TCGA-QC-A7B5-01 10 68979616 68979616 G A CTNNA3 Missense_Mutation p.P198S 0.31 tolerated(0.19) benign(0.444) TCGA-QC-A7B5-01 10 69648754 69648754 G A SIRT1 Nonsense_Mutation p.W221* 0.26 TCGA-QC-A7B5-01 10 70405073 70405073 C T TET1 Missense_Mutation p.P863S 0.30 tolerated(0.06) benign(0.011) TCGA-QC-A7B5-01 10 70450581 70450581 C T TET1 Silent p.T1807T 0.40 TCGA-QC-A7B5-01 10 70719689 70719689 C T DDX21 Missense_Mutation p.P72L 0.14 tolerated_low_confidence(0.09) benign(0.002) TCGA-QC-A7B5-01 10 71151967 71151967 G A HK1 Missense_Mutation p.E712K 0.42 deleterious(0) possibly_damaging(0.875) TCGA-QC-A7B5-01 10 72289798 72289798 C T PALD1 Nonsense_Mutation p.Q148* 0.19 TCGA-QC-A7B5-01 10 7269837 7269837 G A SFMBT2 Missense_Mutation p.P395S 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-QC-A7B5-01 10 73337680 73337680 G A CDH23 Missense_Mutation p.V255M 0.46 deleterious(0) probably_damaging(0.987) TCGA-QC-A7B5-01 10 73766992 73766992 C T CHST3 Missense_Mutation p.A68V 0.18 tolerated_low_confidence(0.26) benign(0.068) TCGA-QC-A7B5-01 10 75530965 75530965 G A SEC24C 3'UTR 0.36 TCGA-QC-A7B5-01 10 75530966 75530966 G A SEC24C 3'UTR 0.34 TCGA-QC-A7B5-01 10 75552596 75552596 G A ZSWIM8 Missense_Mutation p.E767K 0.13 tolerated(0.07) possibly_damaging(0.496) TCGA-QC-A7B5-01 10 7618664 7618664 C T ITIH5 Nonsense_Mutation p.W577* 0.12 TCGA-QC-A7B5-01 10 7684050 7684050 T C ITIH5 Missense_Mutation p.T47A 0.35 tolerated(0.09) benign(0.073) TCGA-QC-A7B5-01 10 82405963 82405963 G A SH2D4B 3'UTR 0.11 TCGA-QC-A7B5-01 10 857978 857978 G A LARP4B 3'UTR 0.35 TCGA-QC-A7B5-01 10 85967952 85967952 G A CDHR1 Missense_Mutation p.G329E 0.20 tolerated(0.47) possibly_damaging(0.809) TCGA-QC-A7B5-01 10 85978855 85978855 G A CDHR1 3'Flank 0.20 TCGA-QC-A7B5-01 10 88476375 88476375 C T LDB3 Missense_Mutation p.S513F 0.45 deleterious(0) benign(0.332) TCGA-QC-A7B5-01 10 90490889 90490889 A C LIPK Silent p.R125R 0.17 TCGA-QC-A7B5-01 10 90528669 90528669 C T LIPN Missense_Mutation p.P219L 0.21 tolerated(0.08) possibly_damaging(0.834) TCGA-QC-A7B5-01 10 93253 93253 C T TUBB8 Missense_Mutation p.G360E 0.14 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-QC-A7B5-01 10 94669234 94669234 C T EXOC6 Missense_Mutation p.P170L 0.34 deleterious(0.03) possibly_damaging(0.873) TCGA-QC-A7B5-01 10 95157177 95157177 C T MYOF Missense_Mutation p.E420K 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 10 96495123 96495123 G A CYP2C18 Silent p.K465K 0.20 TCGA-QC-A7B5-01 10 98988928 98988928 C T ARHGAP19 Missense_Mutation p.E484K 0.17 tolerated_low_confidence(0.12) possibly_damaging(0.899) TCGA-QC-A7B5-01 10 99131848 99131848 G A RRP12 Silent p.T775T 0.11 TCGA-QC-A7B5-01 11 100864307 100864307 G A TMEM133 3'UTR 0.28 TCGA-QC-A7B5-01 11 103047069 103047069 C T DYNC2H1 Missense_Mutation p.P1927L 0.29 possibly_damaging(0.809) TCGA-QC-A7B5-01 11 103106525 103106525 A G DYNC2H1 Missense_Mutation p.K3231R 0.29 benign(0.028) TCGA-QC-A7B5-01 11 103158310 103158310 G A DYNC2H1 Missense_Mutation p.A3698T 0.33 benign(0.001) TCGA-QC-A7B5-01 11 103908223 103908223 G A DDI1 Missense_Mutation p.E225K 0.20 deleterious(0.03) benign(0.371) TCGA-QC-A7B5-01 11 10673657 10673657 G A MRVI1 Missense_Mutation p.S47F 0.26 deleterious_low_confidence(0) benign(0.019) TCGA-QC-A7B5-01 11 108153445 108153445 G A ATM Silent p.E1195E 0.38 TCGA-QC-A7B5-01 11 10875745 10875745 G A ZBED5 Missense_Mutation p.R250C 0.37 deleterious(0.01) benign(0.429) TCGA-QC-A7B5-01 11 110102420 110102420 T C RDX Intron 0.19 TCGA-QC-A7B5-01 11 111711380 111711380 G A ALG9 Nonsense_Mutation p.Q220* 0.41 TCGA-QC-A7B5-01 11 113105840 113105840 G A NCAM1 Silent p.G642G 0.33 TCGA-QC-A7B5-01 11 113780017 113780017 G A HTR3B Missense_Mutation p.G18E 0.12 tolerated(0.08) benign(0.018) TCGA-QC-A7B5-01 11 117075079 117075079 G A TAGLN 3'UTR 0.27 TCGA-QC-A7B5-01 11 117075080 117075080 G A TAGLN 3'UTR 0.26 TCGA-QC-A7B5-01 11 117395666 117395666 C G DSCAML1 Missense_Mutation p.R324P 0.16 tolerated(0.21) possibly_damaging(0.847) TCGA-QC-A7B5-01 11 117691207 117691207 C T FXYD2 Intron 0.21 TCGA-QC-A7B5-01 11 117698733 117698733 G A FXYD2 5'Flank 0.25 TCGA-QC-A7B5-01 11 118034057 118034057 C T SCN2B 3'UTR 0.43 TCGA-QC-A7B5-01 11 118253316 118253316 C T UBE4A Silent p.P681P 0.35 TCGA-QC-A7B5-01 11 118444334 118444334 G A ARCN1 Intron 0.26 TCGA-QC-A7B5-01 11 118444336 118444336 T A ARCN1 Intron 0.26 TCGA-QC-A7B5-01 11 118499010 118499010 C A PHLDB1 Silent p.R491R 0.35 TCGA-QC-A7B5-01 11 118765779 118765779 C A BCL9L 3'UTR 0.14 TCGA-QC-A7B5-01 11 118769682 118769682 G A BCL9L Silent p.I1314I 0.35 TCGA-QC-A7B5-01 11 118772243 118772243 G A BCL9L Missense_Mutation p.P737S 0.42 benign(0.278) TCGA-QC-A7B5-01 11 119024743 119024743 G A ABCG4 Silent p.K82K 0.41 TCGA-QC-A7B5-01 11 119535249 119535249 G A PVRL1 3'UTR 0.32 TCGA-QC-A7B5-01 11 1213550 1213550 C T MUC5AC RNA 0.18 TCGA-QC-A7B5-01 11 1213551 1213551 C T MUC5AC RNA 0.20 TCGA-QC-A7B5-01 11 121478885 121478885 G A SORL1 Missense_Mutation p.V1747M 0.31 tolerated(0.23) benign(0.309) TCGA-QC-A7B5-01 11 123448193 123448193 C T GRAMD1B Missense_Mutation p.H48Y 0.33 deleterious(0.05) possibly_damaging(0.622) TCGA-QC-A7B5-01 11 123677024 123677024 G A OR6M1 Silent p.L12L 0.31 TCGA-QC-A7B5-01 11 123814182 123814182 G A OR6T1 Missense_Mutation p.R122C 0.30 deleterious(0.01) possibly_damaging(0.637) TCGA-QC-A7B5-01 11 124189418 124189418 G A OR8D2 Missense_Mutation p.L226F 0.39 tolerated(0.08) possibly_damaging(0.776) TCGA-QC-A7B5-01 11 124756975 124756975 G A ROBO4 Missense_Mutation p.S778F 0.18 deleterious(0) possibly_damaging(0.485) TCGA-QC-A7B5-01 11 125303089 125303089 G A PKNOX2 3'UTR 0.28 TCGA-QC-A7B5-01 11 1256379 1256379 G A MUC5B Missense_Mutation p.G899R 0.21 unknown(0) TCGA-QC-A7B5-01 11 1256380 1256380 G A MUC5B Missense_Mutation p.G899E 0.22 unknown(0) TCGA-QC-A7B5-01 11 1256382 1256382 G A MUC5B Missense_Mutation p.D900N 0.24 unknown(0) TCGA-QC-A7B5-01 11 126316723 126316723 G A KIRREL3 Silent p.A352A 0.27 TCGA-QC-A7B5-01 11 1264737 1264737 G A MUC5B Silent p.T2209T 0.24 TCGA-QC-A7B5-01 11 1264738 1264738 G A MUC5B Missense_Mutation p.V2210M 0.23 possibly_damaging(0.84) TCGA-QC-A7B5-01 11 1272374 1272374 C G MUC5B Missense_Mutation p.S4755C 0.30 unknown(0) TCGA-QC-A7B5-01 11 128331584 128331584 G A ETS1 3'UTR 0.20 TCGA-QC-A7B5-01 11 128786615 128786615 G A KCNJ5 Missense_Mutation p.G417S 0.29 tolerated_low_confidence(0.09) benign(0) TCGA-QC-A7B5-01 11 12959935 12959935 T A TEAD1 3'UTR 0.30 TCGA-QC-A7B5-01 11 129827661 129827661 G A PRDM10 Missense_Mutation p.H72Y 0.44 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-QC-A7B5-01 11 132016333 132016333 G A NTM Missense_Mutation p.D109N 0.41 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 132184564 132184564 C T NTM Silent p.L301L 0.17 TCGA-QC-A7B5-01 11 132285054 132285054 G A OPCML 3'UTR 0.35 TCGA-QC-A7B5-01 11 132306560 132306560 C A OPCML Nonsense_Mutation p.E260* 0.45 TCGA-QC-A7B5-01 11 134244501 134244501 G A GLB1L2 Nonsense_Mutation p.W571* 0.34 TCGA-QC-A7B5-01 11 134254067 134254067 G A B3GAT1 Missense_Mutation p.P43L 0.45 tolerated_low_confidence(0.36) benign(0.001) TCGA-QC-A7B5-01 11 134254068 134254068 G A B3GAT1 Missense_Mutation p.P43S 0.45 tolerated_low_confidence(1) benign(0) TCGA-QC-A7B5-01 11 1432834 1432834 C T BRSK2 Missense_Mutation p.T67I 0.53 tolerated(0.1) benign(0.008) TCGA-QC-A7B5-01 11 15098911 15098911 G A CALCB Missense_Mutation p.G102S 0.17 tolerated(0.5) probably_damaging(0.985) TCGA-QC-A7B5-01 11 15098931 15098931 C T CALCB Silent p.F108F 0.34 TCGA-QC-A7B5-01 11 1576502 1576502 G A DUSP8 3'UTR 0.14 TCGA-QC-A7B5-01 11 16876516 16876516 G A PLEKHA7 Missense_Mutation p.H148Y 0.16 deleterious(0) probably_damaging(0.991) TCGA-QC-A7B5-01 11 17378328 17378328 G A NCR3LG1 Nonsense_Mutation p.W67* 0.14 TCGA-QC-A7B5-01 11 17483346 17483346 C T ABCC8 Silent p.R202R 0.39 TCGA-QC-A7B5-01 11 17483347 17483347 C T ABCC8 Missense_Mutation p.R202K 0.38 tolerated(0.78) benign(0) TCGA-QC-A7B5-01 11 17544370 17544370 G A USH1C Missense_Mutation p.S327F 0.44 deleterious(0) possibly_damaging(0.862) TCGA-QC-A7B5-01 11 1778663 1778663 G A CTSD Silent p.L199L 0.40 TCGA-QC-A7B5-01 11 17794294 17794294 G A KCNC1 Intron 0.33 TCGA-QC-A7B5-01 11 18134110 18134110 C T SAA3P RNA 0.34 TCGA-QC-A7B5-01 11 18956521 18956521 C T MRGPRX1 5'UTR 0.37 TCGA-QC-A7B5-01 11 20065565 20065565 C T NAV2 Silent p.S1005S 0.38 TCGA-QC-A7B5-01 11 20414467 20414467 T G PRMT3 Missense_Mutation p.S108A 0.24 benign(0.082) TCGA-QC-A7B5-01 11 21305645 21305645 A G NELL1 Intron 0.17 TCGA-QC-A7B5-01 11 22384297 22384297 G A SLC17A6 Missense_Mutation p.G225E 0.30 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 11 22391619 22391619 C T SLC17A6 Missense_Mutation p.S309F 0.20 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 11 2443398 2443398 C T TRPM5 Missense_Mutation p.G91R 0.26 deleterious(0.01) probably_damaging(0.951) TCGA-QC-A7B5-01 11 2797203 2797203 C G KCNQ1 Missense_Mutation p.P535R 0.31 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 299458 299458 C T IFITM5 Silent p.R11R 0.35 TCGA-QC-A7B5-01 11 30034050 30034050 C T KCNA4 Missense_Mutation p.G59E 0.15 deleterious_low_confidence(0.03) unknown(0) TCGA-QC-A7B5-01 11 30034240 30034240 G A KCNA4 5'UTR 0.20 TCGA-QC-A7B5-01 11 30034739 30034739 G A KCNA4 5'UTR 0.16 TCGA-QC-A7B5-01 11 30902755 30902755 C T DCDC1 Missense_Mutation p.R1725Q 0.28 deleterious(0.03) benign(0.417) TCGA-QC-A7B5-01 11 32461056 32461056 C A WT1 5'Flank 0.42 TCGA-QC-A7B5-01 11 33370745 33370745 C T HIPK3 Missense_Mutation p.R907W 0.35 deleterious(0) probably_damaging(0.912) TCGA-QC-A7B5-01 11 34173424 34173424 G A ABTB2 3'UTR 0.39 TCGA-QC-A7B5-01 11 34477733 34477733 C T CAT Missense_Mutation p.P296L 0.20 deleterious(0.01) probably_damaging(1) TCGA-QC-A7B5-01 11 36310951 36310951 C T COMMD9 Silent p.L4L 0.19 TCGA-QC-A7B5-01 11 36511549 36511549 C A TRAF6 Missense_Mutation p.G470C 0.22 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 36599264 36599264 G A RAG1 3'UTR 0.19 TCGA-QC-A7B5-01 11 40136827 40136827 C T LRRC4C Missense_Mutation p.R339K 0.27 tolerated(0.42) benign(0.001) TCGA-QC-A7B5-01 11 405992 405992 C T SIGIRR Silent p.E379E 0.30 TCGA-QC-A7B5-01 11 405994 405994 C T SIGIRR Missense_Mutation p.E379K 0.30 deleterious(0.01) possibly_damaging(0.611) TCGA-QC-A7B5-01 11 43342406 43342406 T C API5 Silent p.F89F 0.28 TCGA-QC-A7B5-01 11 44074618 44074618 G A ACCSL Silent p.E316E 0.20 TCGA-QC-A7B5-01 11 4470782 4470782 C T OR52K2 Silent p.I71I 0.32 TCGA-QC-A7B5-01 11 46689388 46689388 C T ATG13 Missense_Mutation p.T401I 0.40 deleterious_low_confidence(0.05) possibly_damaging(0.559) TCGA-QC-A7B5-01 11 46689389 46689389 C T ATG13 Silent p.T401T 0.38 TCGA-QC-A7B5-01 11 46700532 46700532 G A ARHGAP1 3'UTR 0.30 TCGA-QC-A7B5-01 11 4674830 4674830 C T OR51E1 3'UTR 0.41 TCGA-QC-A7B5-01 11 46900749 46900749 C T LRP4 Missense_Mutation p.D978N 0.32 tolerated(0.75) benign(0.012) TCGA-QC-A7B5-01 11 46958262 46958262 C T C11orf49 5'Flank 0.35 TCGA-QC-A7B5-01 11 47353736 47353736 C T MYBPC3 Missense_Mutation p.G1234E 0.31 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 47360232 47360232 T C MYBPC3 Splice_Site p.X717_splice 0.38 TCGA-QC-A7B5-01 11 48238822 48238822 C T OR4B1 Missense_Mutation p.S154F 0.28 deleterious(0) probably_damaging(0.987) TCGA-QC-A7B5-01 11 4824749 4824749 G A OR52R1 Missense_Mutation p.P288S 0.15 deleterious(0.01) possibly_damaging(0.573) TCGA-QC-A7B5-01 11 48346767 48346767 C T OR4C3 Missense_Mutation p.S92F 0.10 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 11 5011940 5011940 G A MMP26 Missense_Mutation p.G145R 0.21 tolerated(0.85) benign(0) TCGA-QC-A7B5-01 11 5080082 5080082 G A OR52E2 Missense_Mutation p.S259F 0.33 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 51515577 51515577 T A OR4C46 Missense_Mutation p.V99D 0.34 deleterious_low_confidence(0.01) benign(0.027) TCGA-QC-A7B5-01 11 5255235 5255235 G A HBD Missense_Mutation p.P101S 0.13 deleterious(0.03) probably_damaging(0.998) TCGA-QC-A7B5-01 11 5269676 5269676 G A HBG1 Silent p.F119F 0.12 TCGA-QC-A7B5-01 11 5363996 5363996 C T OR51B5 Silent p.V253V 0.31 TCGA-QC-A7B5-01 11 5373240 5373240 G A OR51B6 Missense_Mutation p.R168Q 0.40 tolerated(0.09) benign(0.055) TCGA-QC-A7B5-01 11 540690 540690 T A LRRC56 Missense_Mutation p.D2E 0.45 tolerated(0.11) benign(0.16) TCGA-QC-A7B5-01 11 541617 541617 G A LRRC56 Silent p.G86G 0.42 TCGA-QC-A7B5-01 11 552576 552576 C T LRRC56 Missense_Mutation p.P397S 0.20 tolerated(0.45) benign(0.027) TCGA-QC-A7B5-01 11 5529648 5529648 G A UBQLN3 Missense_Mutation p.P381S 0.32 tolerated(0.2) possibly_damaging(0.765) TCGA-QC-A7B5-01 11 5536122 5536122 A T UBQLNL 3'UTR 0.11 TCGA-QC-A7B5-01 11 55579328 55579328 C T OR5L1 Missense_Mutation p.P129L 0.36 deleterious(0) probably_damaging(0.963) TCGA-QC-A7B5-01 11 55579651 55579651 G A OR5L1 Missense_Mutation p.A237T 0.20 deleterious(0.04) benign(0.319) TCGA-QC-A7B5-01 11 55587671 55587671 C T OR5D18 Missense_Mutation p.S189F 0.30 deleterious(0) probably_damaging(0.992) TCGA-QC-A7B5-01 11 557835 557835 G A C11orf35 Intron 0.31 TCGA-QC-A7B5-01 11 55890478 55890478 C T OR8H3 Silent p.S210S 0.19 TCGA-QC-A7B5-01 11 56000262 56000262 G A OR5T2 Missense_Mutation p.L134F 0.33 tolerated(0.71) benign(0.02) TCGA-QC-A7B5-01 11 56000263 56000263 G A OR5T2 Silent p.F133F 0.33 TCGA-QC-A7B5-01 11 5603071 5603071 G T OR52B6 Missense_Mutation p.G322V 0.37 tolerated(0.14) probably_damaging(0.999) TCGA-QC-A7B5-01 11 56113787 56113787 C T OR8K1 Silent p.F91F 0.12 TCGA-QC-A7B5-01 11 56230598 56230598 C T OR5M9 Missense_Mutation p.G94R 0.29 deleterious(0) benign(0.031) TCGA-QC-A7B5-01 11 56310062 56310062 G A OR5M11 Silent p.I224I 0.19 TCGA-QC-A7B5-01 11 56380052 56380052 G A OR5M1 Silent p.S309S 0.24 TCGA-QC-A7B5-01 11 57004039 57004039 G A APLNR Missense_Mutation p.A147V 0.38 tolerated(0.55) benign(0.002) TCGA-QC-A7B5-01 11 57381830 57381830 C T SERPING1 Silent p.L427L 0.29 TCGA-QC-A7B5-01 11 57513366 57513366 C T BTBD18 Missense_Mutation p.G127S 0.14 deleterious(0) possibly_damaging(0.821) TCGA-QC-A7B5-01 11 5758028 5758028 C T OR56B1 Silent p.F94F 0.21 TCGA-QC-A7B5-01 11 57886531 57886531 G A OR9I1 Missense_Mutation p.P129L 0.18 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 57948109 57948109 G A OR9Q1 3'UTR 0.31 TCGA-QC-A7B5-01 11 58034517 58034517 C T OR10W1 Missense_Mutation p.G272R 0.29 deleterious(0.01) probably_damaging(0.993) TCGA-QC-A7B5-01 11 5841994 5841994 C T OR52N2 Silent p.I143I 0.10 TCGA-QC-A7B5-01 11 5842312 5842312 C T OR52N2 Silent p.S249S 0.35 TCGA-QC-A7B5-01 11 58480281 58480281 G A GLYAT Missense_Mutation p.L90F 0.19 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 11 5905837 5905837 T C OR52E4 Silent p.F105F 0.46 TCGA-QC-A7B5-01 11 59629151 59629151 T A TCN1 Silent p.A135A 0.35 TCGA-QC-A7B5-01 11 60172041 60172041 C T MS4A14 Intron 0.29 TCGA-QC-A7B5-01 11 60235885 60235885 C T MS4A1 Missense_Mutation p.P280S 0.28 deleterious(0.01) benign(0.322) TCGA-QC-A7B5-01 11 60236030 60236030 C T MS4A1 3'UTR 0.18 TCGA-QC-A7B5-01 11 60274603 60274603 G A MS4A12 3'UTR 0.15 TCGA-QC-A7B5-01 11 60310104 60310104 G A MS4A13 3'UTR 0.12 TCGA-QC-A7B5-01 11 61285983 61285983 C T SYT7 3'UTR 0.36 TCGA-QC-A7B5-01 11 6129372 6129372 C T OR56B4 Missense_Mutation p.L122F 0.14 deleterious(0.01) benign(0.33) TCGA-QC-A7B5-01 11 61560071 61560071 G A TMEM258 5'UTR 0.35 TCGA-QC-A7B5-01 11 61582363 61582363 G A FADS1 Intron 0.30 TCGA-QC-A7B5-01 11 61717718 61717718 G C BEST1 5'Flank 0.30 TCGA-QC-A7B5-01 11 62189806 62189806 G A SCGB1A1 Missense_Mutation p.E57K 0.43 tolerated(0.09) possibly_damaging(0.874) TCGA-QC-A7B5-01 11 62287631 62287631 G A AHNAK Missense_Mutation p.P4753L 0.33 probably_damaging(1) TCGA-QC-A7B5-01 11 62287632 62287632 G A AHNAK Missense_Mutation p.P4753S 0.33 probably_damaging(0.999) TCGA-QC-A7B5-01 11 6232677 6232677 A T FAM160A2 3'UTR 0.34 TCGA-QC-A7B5-01 11 62392824 62392824 G A GANAB 3'UTR 0.20 TCGA-QC-A7B5-01 11 62568890 62568890 C T NXF1 Splice_Site p.X237_splice 0.47 TCGA-QC-A7B5-01 11 62863494 62863494 G A SLC22A24 Nonsense_Mutation p.R347* 0.19 TCGA-QC-A7B5-01 11 6291073 6291073 C T CCKBR Missense_Mutation p.P109L 0.43 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 63137867 63137867 G A SLC22A9 Missense_Mutation p.M113I 0.16 deleterious(0.04) benign(0.002) TCGA-QC-A7B5-01 11 63233660 63233660 G A HRASLS5 Silent p.I223I 0.30 TCGA-QC-A7B5-01 11 63307081 63307081 C T RARRES3 Missense_Mutation p.H35Y 0.40 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 11 63526092 63526092 A C RTN3 3'UTR 0.23 TCGA-QC-A7B5-01 11 63667576 63667576 C T MARK2 Silent p.N254N 0.35 TCGA-QC-A7B5-01 11 63667577 63667577 C T MARK2 Missense_Mutation p.L255F 0.35 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 11 63678771 63678771 C A RCOR2 3'UTR 0.30 TCGA-QC-A7B5-01 11 63723685 63723685 C T NAA40 3'UTR 0.16 TCGA-QC-A7B5-01 11 63988132 63988132 G A FERMT3 Silent p.K516K 0.27 TCGA-QC-A7B5-01 11 64056753 64056753 C T GPR137 Silent p.A448A 0.37 TCGA-QC-A7B5-01 11 64064350 64064350 G A KCNK4 Missense_Mutation p.E64K 0.34 tolerated(0.51) benign(0.058) TCGA-QC-A7B5-01 11 6426720 6426720 C T APBB1 Intron 0.32 TCGA-QC-A7B5-01 11 64757112 64757112 C T BATF2 Missense_Mutation p.G105E 0.23 tolerated(1) benign(0.004) TCGA-QC-A7B5-01 11 64894903 64894903 T C SYVN1 3'UTR 0.32 TCGA-QC-A7B5-01 11 64939415 64939415 G T SPDYC Missense_Mutation p.E67D 0.40 tolerated(0.33) possibly_damaging(0.896) TCGA-QC-A7B5-01 11 64939416 64939416 G T SPDYC Missense_Mutation p.D68Y 0.39 deleterious(0) probably_damaging(0.924) TCGA-QC-A7B5-01 11 6503551 6503551 G A TIMM10B 3'UTR 0.39 TCGA-QC-A7B5-01 11 65108975 65108975 C T DPF2 Missense_Mutation p.P136L 0.32 tolerated(0.52) benign(0.001) TCGA-QC-A7B5-01 11 65108977 65108977 C T DPF2 Nonsense_Mutation p.R137* 0.31 TCGA-QC-A7B5-01 11 65120082 65120082 C T DPF2 3'UTR 0.13 TCGA-QC-A7B5-01 11 65120083 65120083 C T DPF2 3'UTR 0.14 TCGA-QC-A7B5-01 11 65211958 65211958 C T NEAT1 RNA 0.41 TCGA-QC-A7B5-01 11 65268243 65268243 C T MALAT1 RNA 0.34 TCGA-QC-A7B5-01 11 65363171 65363171 C T KCNK7 Missense_Mutation p.A25T 0.47 tolerated(0.1) probably_damaging(0.998) TCGA-QC-A7B5-01 11 65363172 65363172 C T KCNK7 Silent p.G24G 0.47 TCGA-QC-A7B5-01 11 65381110 65381110 C T MAP3K11 Missense_Mutation p.G40S 0.38 tolerated(0.12) benign(0.002) TCGA-QC-A7B5-01 11 65401773 65401773 C T PCNXL3 Silent p.S1549S 0.43 TCGA-QC-A7B5-01 11 65684636 65684636 C T C11orf68 3'UTR 0.45 TCGA-QC-A7B5-01 11 65826321 65826321 C T SF3B2 Silent p.N329N 0.36 TCGA-QC-A7B5-01 11 65826322 65826322 C T SF3B2 Nonsense_Mutation p.R330* 0.36 TCGA-QC-A7B5-01 11 65836249 65836249 C T SF3B2 3'UTR 0.38 TCGA-QC-A7B5-01 11 6591239 6591239 G A DNHD1 Nonsense_Mutation p.W4288* 0.32 TCGA-QC-A7B5-01 11 66055073 66055073 G C YIF1A Missense_Mutation p.I141M 0.36 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 11 66193631 66193631 G A NPAS4 3'UTR 0.33 TCGA-QC-A7B5-01 11 66243577 66243577 G A PELI3 Missense_Mutation p.G450E 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 11 67057726 67057726 G A ANKRD13D Intron 0.37 TCGA-QC-A7B5-01 11 67057727 67057727 G A ANKRD13D Intron 0.38 TCGA-QC-A7B5-01 11 67059201 67059201 C T ANKRD13D Silent p.F175F 0.35 TCGA-QC-A7B5-01 11 6738517 6738517 C T GVINP1 RNA 0.20 TCGA-QC-A7B5-01 11 6742292 6742292 G A GVINP1 RNA 0.30 TCGA-QC-A7B5-01 11 6742293 6742293 G A GVINP1 RNA 0.30 TCGA-QC-A7B5-01 11 67766694 67766694 G A UNC93B1 Silent p.S212S 0.26 TCGA-QC-A7B5-01 11 67766695 67766695 G A UNC93B1 Missense_Mutation p.S212F 0.26 deleterious(0.01) possibly_damaging(0.807) TCGA-QC-A7B5-01 11 6807180 6807180 C T OR2AG1 Silent p.V304V 0.36 TCGA-QC-A7B5-01 11 6815992 6815992 C T OR6A2 Silent p.Q316Q 0.27 TCGA-QC-A7B5-01 11 68367956 68367956 C T PPP6R3 Missense_Mutation p.S729F 0.35 tolerated(1) benign(0.419) TCGA-QC-A7B5-01 11 6867796 6867796 A T OR10A5 Missense_Mutation p.N295Y 0.35 deleterious(0) probably_damaging(0.968) TCGA-QC-A7B5-01 11 71850435 71850435 G T FOLR3 Silent p.L176L 0.34 TCGA-QC-A7B5-01 11 72408032 72408032 G A ARAP1 Silent p.A1054A 0.30 TCGA-QC-A7B5-01 11 72553810 72553810 G A FCHSD2 Silent p.I594I 0.26 TCGA-QC-A7B5-01 11 73588039 73588039 G A PAAF1 5'UTR 0.42 TCGA-QC-A7B5-01 11 73717404 73717404 C T UCP3 Silent p.A49A 0.27 TCGA-QC-A7B5-01 11 74442014 74442014 C T CHRDL2 5'UTR 0.44 TCGA-QC-A7B5-01 11 74716821 74716821 C T NEU3 Nonsense_Mutation p.Q224* 0.32 TCGA-QC-A7B5-01 11 7488075 7488075 A G SYT9 3'UTR 0.31 TCGA-QC-A7B5-01 11 75146397 75146397 C T GDPD5 3'UTR 0.36 TCGA-QC-A7B5-01 11 77921522 77921522 C A USP35 Missense_Mutation p.P874H 0.29 deleterious(0) probably_damaging(0.972) TCGA-QC-A7B5-01 11 788068 788068 C T CEND1 3'UTR 0.38 TCGA-QC-A7B5-01 11 823582 823582 G T PNPLA2 Missense_Mutation p.R251L 0.32 deleterious(0.01) possibly_damaging(0.483) TCGA-QC-A7B5-01 11 82643941 82643941 T C C11orf82 Missense_Mutation p.S521P 0.31 deleterious(0.01) possibly_damaging(0.878) TCGA-QC-A7B5-01 11 82880096 82880096 C T PCF11 Missense_Mutation p.P907S 0.24 tolerated(0.06) benign(0.015) TCGA-QC-A7B5-01 11 82909572 82909572 G A ANKRD42 Missense_Mutation p.G37E 0.31 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 11 83169540 83169540 C T DLG2 3'UTR 0.41 TCGA-QC-A7B5-01 11 8706304 8706304 C T RPL27A Silent p.Y61Y 0.38 TCGA-QC-A7B5-01 11 88780694 88780694 G A GRM5 Missense_Mutation p.S116F 0.42 deleterious(0) probably_damaging(0.978) TCGA-QC-A7B5-01 11 89450848 89450848 C T TRIM77 Silent p.F387F 0.18 TCGA-QC-A7B5-01 11 90602360 90602360 T C MIR1261 RNA 0.25 TCGA-QC-A7B5-01 11 93088656 93088656 G A CCDC67 Missense_Mutation p.R50Q 0.13 tolerated(0.58) probably_damaging(0.999) TCGA-QC-A7B5-01 11 93912979 93912979 C T PANX1 Silent p.L253L 0.26 TCGA-QC-A7B5-01 11 94906302 94906302 G A SESN3 3'UTR 0.23 TCGA-QC-A7B5-01 11 99827714 99827714 C T CNTN5 Missense_Mutation p.P284S 0.20 deleterious(0.02) probably_damaging(0.947) TCGA-QC-A7B5-01 12 100042272 100042272 G A FAM71C Missense_Mutation p.R107K 0.28 tolerated(0.62) benign(0.006) TCGA-QC-A7B5-01 12 100934550 100934550 T G NR1H4 Silent p.L354L 0.18 TCGA-QC-A7B5-01 12 102160056 102160056 A G GNPTAB Silent p.S475S 0.50 TCGA-QC-A7B5-01 12 103237521 103237521 C T PAH Missense_Mutation p.E368K 0.10 deleterious(0) benign(0.227) TCGA-QC-A7B5-01 12 104495890 104495890 C T HCFC2 Missense_Mutation p.P675S 0.20 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 12 104714904 104714904 A T TXNRD1 Missense_Mutation p.K342M 0.27 deleterious(0) probably_damaging(0.985) TCGA-QC-A7B5-01 12 104714905 104714905 G A TXNRD1 Silent p.K342K 0.27 TCGA-QC-A7B5-01 12 105425713 105425713 C T ALDH1L2 Splice_Site p.X749_splice 0.22 TCGA-QC-A7B5-01 12 106633476 106633476 G A CKAP4 Nonsense_Mutation p.Q379* 0.15 TCGA-QC-A7B5-01 12 108045475 108045475 C T BTBD11 Nonsense_Mutation p.Q1006* 0.12 TCGA-QC-A7B5-01 12 108958135 108958135 G A ISCU Silent p.G65G 0.47 TCGA-QC-A7B5-01 12 108985902 108985902 C T TMEM119 Silent p.G86G 0.27 TCGA-QC-A7B5-01 12 109186349 109186349 C T SSH1 Missense_Mutation p.E536K 0.13 deleterious_low_confidence(0.02) benign(0.077) TCGA-QC-A7B5-01 12 109522791 109522791 T A USP30 Missense_Mutation p.I401N 0.21 tolerated(0.12) benign(0.134) TCGA-QC-A7B5-01 12 109894018 109894018 C T KCTD10 Missense_Mutation p.E210K 0.21 deleterious(0.05) benign(0.241) TCGA-QC-A7B5-01 12 110252674 110252674 G A TRPV4 5'UTR 0.24 TCGA-QC-A7B5-01 12 111345205 111345205 G A CCDC63 Silent p.R539R 0.17 TCGA-QC-A7B5-01 12 111776258 111776258 T C CUX2 Missense_Mutation p.M1122T 0.30 deleterious(0) benign(0.268) TCGA-QC-A7B5-01 12 111787866 111787866 G A CUX2 3'UTR 0.08 TCGA-QC-A7B5-01 12 111890609 111890609 G C ATXN2 3'UTR 0.21 TCGA-QC-A7B5-01 12 112247357 112247357 A C ALDH2 Missense_Mutation p.K511T 0.24 deleterious(0.01) benign(0.266) TCGA-QC-A7B5-01 12 112630518 112630518 G A HECTD4 Silent p.G2900G 0.26 TCGA-QC-A7B5-01 12 112631418 112631418 G A HECTD4 Missense_Mutation p.S2791F 0.17 benign(0.323) TCGA-QC-A7B5-01 12 112844095 112844095 T C RPL6 Intron 0.51 TCGA-QC-A7B5-01 12 11461538 11461538 C T PRB4 Missense_Mutation p.G127R 0.35 deleterious_low_confidence(0) unknown(0) TCGA-QC-A7B5-01 12 11461601 11461601 C G PRB4 Missense_Mutation p.G106R 0.34 deleterious_low_confidence(0) unknown(0) TCGA-QC-A7B5-01 12 114792688 114792688 A G TBX5 3'UTR 0.35 TCGA-QC-A7B5-01 12 114793599 114793599 G A TBX5 Missense_Mutation p.S432L 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-QC-A7B5-01 12 11506298 11506298 C T PRB1 Missense_Mutation p.G114R 0.08 deleterious_low_confidence(0.03) unknown(0) TCGA-QC-A7B5-01 12 118199039 118199039 G T KSR2 Silent p.R255R 0.22 TCGA-QC-A7B5-01 12 119631631 119631631 C T HSPB8 Missense_Mutation p.P187S 0.20 deleterious_low_confidence(0.01) benign(0.371) TCGA-QC-A7B5-01 12 119773025 119773025 A G CCDC60 Missense_Mutation p.N15S 0.40 tolerated_low_confidence(0.4) benign(0.003) TCGA-QC-A7B5-01 12 120067675 120067675 G A TMEM233 Silent p.R107R 0.15 TCGA-QC-A7B5-01 12 120779746 120779746 G A MSI1 3'UTR 0.13 TCGA-QC-A7B5-01 12 120884352 120884352 G A GATC Silent p.K23K 0.17 TCGA-QC-A7B5-01 12 121131956 121131956 C T MLEC Nonsense_Mutation p.Q100* 0.36 TCGA-QC-A7B5-01 12 121136453 121136453 C T MLEC 3'UTR 0.39 TCGA-QC-A7B5-01 12 121434601 121434601 G A HNF1A Intron 0.51 TCGA-QC-A7B5-01 12 122235555 122235555 G A RHOF 5'Flank 0.39 TCGA-QC-A7B5-01 12 122398649 122398649 G A WDR66 Silent p.G764G 0.45 TCGA-QC-A7B5-01 12 122617972 122617972 C T MLXIP Silent p.S390S 0.17 TCGA-QC-A7B5-01 12 123813425 123813425 A C SBNO1 Missense_Mutation p.I384M 0.26 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 12 124325906 124325906 G A DNAH10 Missense_Mutation p.G1607D 0.21 benign(0.029) TCGA-QC-A7B5-01 12 124498767 124498767 C T ZNF664 3'UTR 0.41 TCGA-QC-A7B5-01 12 124498768 124498768 C T ZNF664 3'UTR 0.41 TCGA-QC-A7B5-01 12 124841221 124841221 G A NCOR2 Missense_Mutation p.P1070S 0.44 benign(0.406) TCGA-QC-A7B5-01 12 125396249 125396249 A G UBC 3'UTR 0.20 TCGA-QC-A7B5-01 12 126128661 126128661 G A TMEM132B Missense_Mutation p.E488K 0.42 deleterious(0) possibly_damaging(0.886) TCGA-QC-A7B5-01 12 126128723 126128723 C T TMEM132B Silent p.F508F 0.15 TCGA-QC-A7B5-01 12 127229425 127229425 G A LINC00943 RNA 0.25 TCGA-QC-A7B5-01 12 129569313 129569313 G A TMEM132D Intron 0.37 TCGA-QC-A7B5-01 12 13061396 13061396 C T GPRC5A Silent p.F71F 0.18 TCGA-QC-A7B5-01 12 130926662 130926662 G A RIMBP2 Missense_Mutation p.S395F 0.20 tolerated(0.05) possibly_damaging(0.689) TCGA-QC-A7B5-01 12 130926872 130926872 C T RIMBP2 Missense_Mutation p.G325E 0.19 tolerated(0.18) probably_damaging(1) TCGA-QC-A7B5-01 12 133331453 133331453 C T ANKLE2 Missense_Mutation p.G150S 0.43 tolerated(1) benign(0.004) TCGA-QC-A7B5-01 12 14689593 14689593 C T PLBD1 Missense_Mutation p.D204N 0.16 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 12 18889211 18889211 A G PLCZ1 Silent p.L27L 0.49 TCGA-QC-A7B5-01 12 1940156 1940156 C T LRTM2 Silent p.F41F 0.18 TCGA-QC-A7B5-01 12 20905387 20905387 C T SLCO1C1 Missense_Mutation p.P723S 0.38 tolerated_low_confidence(0.5) benign(0.001) TCGA-QC-A7B5-01 12 21196418 21196418 C T SLCO1B7 Missense_Mutation p.S246L 0.17 deleterious(0.03) benign(0.028) TCGA-QC-A7B5-01 12 22078345 22078345 C T ABCC9 Intron 0.38 TCGA-QC-A7B5-01 12 22672105 22672105 G A C2CD5 Intron 0.21 TCGA-QC-A7B5-01 12 2693781 2693781 C T CACNA1C Silent p.A779A 0.43 TCGA-QC-A7B5-01 12 27542927 27542927 C T ARNTL2 Intron 0.13 TCGA-QC-A7B5-01 12 2977887 2977887 G T FOXM1 Missense_Mutation p.Q230K 0.39 tolerated(0.14) benign(0.037) TCGA-QC-A7B5-01 12 313752 313752 C T SLC6A12 Silent p.R109R 0.22 TCGA-QC-A7B5-01 12 3147171 3147171 C T TEAD4 Missense_Mutation p.S312F 0.42 deleterious(0.03) benign(0.003) TCGA-QC-A7B5-01 12 3147172 3147172 C T TEAD4 Silent p.S312S 0.42 TCGA-QC-A7B5-01 12 3702286 3702286 G A PRMT8 Missense_Mutation p.D375N 0.27 tolerated(0.11) benign(0.005) TCGA-QC-A7B5-01 12 3806137 3806137 G A EFCAB4B Missense_Mutation p.S10F 0.12 deleterious_low_confidence(0) possibly_damaging(0.667) TCGA-QC-A7B5-01 12 39757000 39757000 C A KIF21A Missense_Mutation p.V307L 0.42 deleterious(0) possibly_damaging(0.758) TCGA-QC-A7B5-01 12 40076480 40076480 G A C12orf40 Missense_Mutation p.D252N 0.17 tolerated(1) benign(0.004) TCGA-QC-A7B5-01 12 40955397 40955397 C T MUC19 3'UTR 0.47 TCGA-QC-A7B5-01 12 42858908 42858908 C T PRICKLE1 Missense_Mutation p.E310K 0.16 deleterious(0) probably_damaging(0.927) TCGA-QC-A7B5-01 12 43862452 43862452 C T ADAMTS20 Missense_Mutation p.E392K 0.12 deleterious(0) probably_damaging(0.945) TCGA-QC-A7B5-01 12 48131351 48131351 C T RAPGEF3 Silent p.%3D 0.16 TCGA-QC-A7B5-01 12 48176746 48176746 C T HDAC7 3'UTR 0.35 TCGA-QC-A7B5-01 12 4835976 4835976 C T GALNT8 Missense_Mutation p.P164S 0.46 deleterious(0.02) possibly_damaging(0.545) TCGA-QC-A7B5-01 12 48362093 48362093 C T TMEM106C 3'UTR 0.41 TCGA-QC-A7B5-01 12 48596332 48596332 C T OR10AD1 Silent p.V248V 0.17 TCGA-QC-A7B5-01 12 48723629 48723629 G A H1FNT Silent p.R185R 0.18 TCGA-QC-A7B5-01 12 48919765 48919765 G A OR8S1 Silent p.G117G 0.44 TCGA-QC-A7B5-01 12 4922510 4922510 G A KCNA6 3'UTR 0.24 TCGA-QC-A7B5-01 12 4923696 4923696 T C KCNA6 3'UTR 0.23 TCGA-QC-A7B5-01 12 49251848 49251848 G T RND1 Silent p.L210L 0.24 TCGA-QC-A7B5-01 12 49332417 49332417 G A ARF3 3'UTR 0.21 TCGA-QC-A7B5-01 12 49426709 49426709 G A KMT2D Nonsense_Mutation p.Q3927* 0.44 TCGA-QC-A7B5-01 12 49524995 49524995 C T TUBA1B Intron 0.31 TCGA-QC-A7B5-01 12 50035978 50035978 C T FMNL3 3'UTR 0.35 TCGA-QC-A7B5-01 12 50355888 50355888 G A AQP5 Missense_Mutation p.G30S 0.30 deleterious(0.03) possibly_damaging(0.705) TCGA-QC-A7B5-01 12 50355889 50355889 G A AQP5 Missense_Mutation p.G30D 0.32 deleterious(0) probably_damaging(0.976) TCGA-QC-A7B5-01 12 51442931 51442931 C T LETMD1 Silent p.F79F 0.19 TCGA-QC-A7B5-01 12 52564533 52564533 G A KRT80 3'UTR 0.24 TCGA-QC-A7B5-01 12 52800071 52800071 G A KRT82 5'UTR 0.38 TCGA-QC-A7B5-01 12 52911713 52911713 C T KRT5 Missense_Mutation p.E299K 0.41 deleterious(0.01) probably_damaging(0.98) TCGA-QC-A7B5-01 12 52912819 52912819 C T KRT5 Silent p.R227R 0.17 TCGA-QC-A7B5-01 12 52912820 52912820 C T KRT5 Missense_Mutation p.R227K 0.17 deleterious(0.05) benign(0.163) TCGA-QC-A7B5-01 12 53207481 53207481 G A KRT4 Missense_Mutation p.P121L 0.19 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 12 53207482 53207482 G A KRT4 Missense_Mutation p.P121S 0.20 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 12 53427627 53427627 G A EIF4B Silent p.R339R 0.19 TCGA-QC-A7B5-01 12 53458999 53458999 C T SPRYD3 3'UTR 0.32 TCGA-QC-A7B5-01 12 55688132 55688132 C T OR6C6 Silent p.V295V 0.15 TCGA-QC-A7B5-01 12 55715280 55715280 C A OR6C1 Missense_Mutation p.F299L 0.54 tolerated_low_confidence(0.13) benign(0.011) TCGA-QC-A7B5-01 12 55759635 55759635 C T OR6C75 Silent p.S247S 0.18 TCGA-QC-A7B5-01 12 55820153 55820153 G A OR6C76 Missense_Mutation p.G39E 0.61 deleterious_low_confidence(0.01) probably_damaging(0.93) TCGA-QC-A7B5-01 12 55886840 55886840 C T OR6C68 Missense_Mutation p.P227S 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.79) TCGA-QC-A7B5-01 12 56030944 56030944 C T OR10P1 Missense_Mutation p.P90L 0.39 tolerated(0.08) benign(0.013) TCGA-QC-A7B5-01 12 56119323 56119323 G A CD63 3'UTR 0.35 TCGA-QC-A7B5-01 12 56380714 56380714 C T RAB5B 5'UTR 0.56 TCGA-QC-A7B5-01 12 56386779 56386779 G A RAB5B 3'UTR 0.33 TCGA-QC-A7B5-01 12 56397910 56397910 C T SUOX Missense_Mutation p.S246F 0.36 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 12 56514305 56514305 G A ZC3H10 5'UTR 0.31 TCGA-QC-A7B5-01 12 56600344 56600344 G A RNF41 Missense_Mutation p.P281S 0.28 tolerated(0.06) probably_damaging(0.996) TCGA-QC-A7B5-01 12 56600345 56600345 G A RNF41 Silent p.I280I 0.29 TCGA-QC-A7B5-01 12 56740715 56740715 C T STAT2 Silent p.R583R 0.28 TCGA-QC-A7B5-01 12 56755347 56755347 G A APOF Nonsense_Mutation p.R215* 0.19 TCGA-QC-A7B5-01 12 56755634 56755634 G A APOF Missense_Mutation p.A119V 0.42 deleterious(0.01) probably_damaging(0.939) TCGA-QC-A7B5-01 12 5687149 5687149 C T ANO2 Missense_Mutation p.G804E 0.22 deleterious(0) probably_damaging(0.975) TCGA-QC-A7B5-01 12 57005382 57005382 C T BAZ2A Missense_Mutation p.E551K 0.44 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 12 57007780 57007780 G A BAZ2A Silent p.I293I 0.43 TCGA-QC-A7B5-01 12 57113564 57113564 G A NACA Missense_Mutation p.L584F 0.46 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-QC-A7B5-01 12 57587023 57587023 C T LRP1 Silent p.F2540F 0.51 TCGA-QC-A7B5-01 12 57843514 57843514 C T INHBC Silent p.F256F 0.42 TCGA-QC-A7B5-01 12 57859444 57859444 G A GLI1 Missense_Mutation p.G197S 0.45 deleterious(0.03) possibly_damaging(0.566) TCGA-QC-A7B5-01 12 57859445 57859445 G A GLI1 Missense_Mutation p.G197D 0.42 deleterious(0.01) benign(0.044) TCGA-QC-A7B5-01 12 58127883 58127883 C T AGAP2 Missense_Mutation p.R492H 0.44 tolerated(0.55) benign(0.002) TCGA-QC-A7B5-01 12 62148676 62148676 C T FAM19A2 Missense_Mutation p.R79Q 0.15 tolerated(0.07) possibly_damaging(0.746) TCGA-QC-A7B5-01 12 66359633 66359633 A T HMGA2 3'UTR 0.23 TCGA-QC-A7B5-01 12 66359634 66359634 A T HMGA2 3'UTR 0.23 TCGA-QC-A7B5-01 12 6637024 6637024 C T NCAPD2 Missense_Mutation p.R997C 0.25 deleterious(0) possibly_damaging(0.893) TCGA-QC-A7B5-01 12 66531763 66531763 G A TMBIM4 Silent p.L232L 0.32 TCGA-QC-A7B5-01 12 6675465 6675465 C T NOP2 Silent p.K92K 0.47 TCGA-QC-A7B5-01 12 6679736 6679736 G A CHD4 3'UTR 0.24 TCGA-QC-A7B5-01 12 6692433 6692433 G A CHD4 Nonsense_Mutation p.R1331* 0.51 TCGA-QC-A7B5-01 12 6692434 6692434 G A CHD4 Silent p.A1330A 0.51 TCGA-QC-A7B5-01 12 670817 670817 G A B4GALNT3 3'UTR 0.31 TCGA-QC-A7B5-01 12 6715594 6715594 G A CHD4 5'UTR 0.56 TCGA-QC-A7B5-01 12 6715595 6715595 G A CHD4 5'UTR 0.55 TCGA-QC-A7B5-01 12 67686409 67686409 C T CAND1 Missense_Mutation p.P74S 0.11 deleterious(0.03) probably_damaging(0.969) TCGA-QC-A7B5-01 12 70048991 70048991 G A BEST3 Missense_Mutation p.S568L 0.39 tolerated_low_confidence(0.55) benign(0.003) TCGA-QC-A7B5-01 12 7043434 7043434 C T ATN1 Silent p.S41S 0.28 TCGA-QC-A7B5-01 12 71155319 71155319 G A PTPRR Missense_Mutation p.R187C 0.37 deleterious(0) possibly_damaging(0.487) TCGA-QC-A7B5-01 12 72338446 72338446 G A TPH2 Missense_Mutation p.E174K 0.14 deleterious(0) benign(0.405) TCGA-QC-A7B5-01 12 7362788 7362788 C T PEX5 Missense_Mutation p.T645I 0.13 tolerated(0.35) benign(0.013) TCGA-QC-A7B5-01 12 7463239 7463239 C T ACSM4 Missense_Mutation p.P173S 0.21 tolerated(0.07) benign(0.303) TCGA-QC-A7B5-01 12 7463240 7463240 C T ACSM4 Missense_Mutation p.P173L 0.21 deleterious(0.03) benign(0.119) TCGA-QC-A7B5-01 12 7522176 7522176 A T CD163L1 Missense_Mutation p.D1272E 0.40 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 12 7550929 7550929 C T CD163L1 Missense_Mutation p.D554N 0.26 tolerated(1) benign(0.028) TCGA-QC-A7B5-01 12 7556137 7556137 A G CD163L1 Missense_Mutation p.C468R 0.40 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 12 7640459 7640459 C T CD163 Missense_Mutation p.G549R 0.17 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 12 78553058 78553058 G A NAV3 Missense_Mutation p.E1621K 0.41 deleterious(0) benign(0.287) TCGA-QC-A7B5-01 12 7894031 7894031 C T CLEC4C Missense_Mutation p.G74E 0.14 deleterious(0.01) benign(0.231) TCGA-QC-A7B5-01 12 7917957 7917957 G A NANOGNB Missense_Mutation p.E26K 0.12 tolerated_low_confidence(0.16) benign(0.004) TCGA-QC-A7B5-01 12 79842934 79842934 C T SYT1 3'UTR 0.30 TCGA-QC-A7B5-01 12 80935406 80935406 C T PTPRQ Missense_Mutation p.P1072L 0.20 tolerated(0.08) benign(0.206) TCGA-QC-A7B5-01 12 81741332 81741332 G A PPFIA2 Missense_Mutation p.R738W 0.36 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 12 82752088 82752088 G A CCDC59 Missense_Mutation p.S23F 0.17 deleterious(0) possibly_damaging(0.907) TCGA-QC-A7B5-01 12 83250830 83250830 C T TMTC2 Missense_Mutation p.P42L 0.55 deleterious(0) probably_damaging(0.969) TCGA-QC-A7B5-01 12 85460656 85460656 A G LRRIQ1 Missense_Mutation p.Y892C 0.37 deleterious(0) benign(0.371) TCGA-QC-A7B5-01 12 85492693 85492693 G A LRRIQ1 Missense_Mutation p.D1044N 0.36 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 12 8687363 8687363 C T CLEC4E Silent p.E177E 0.44 TCGA-QC-A7B5-01 12 8800582 8800582 G A MFAP5 3'UTR 0.27 TCGA-QC-A7B5-01 12 88379735 88379735 C T C12orf50 Missense_Mutation p.D340N 0.15 tolerated(0.07) possibly_damaging(0.705) TCGA-QC-A7B5-01 12 88474097 88474097 C T CEP290 Silent p.Q1696Q 0.21 TCGA-QC-A7B5-01 12 89746153 89746153 C T DUSP6 5'UTR 0.50 TCGA-QC-A7B5-01 12 9087005 9087005 C T PHC1 Silent p.I728I 0.48 TCGA-QC-A7B5-01 12 91348286 91348286 T C CCER1 Silent p.Q78Q 0.40 TCGA-QC-A7B5-01 12 9252103 9252103 G A A2M Silent p.S525S 0.19 TCGA-QC-A7B5-01 12 9305772 9305772 G A PZP Silent p.L1314L 0.15 TCGA-QC-A7B5-01 12 9393974 9393974 G A LINC00987 RNA 0.18 TCGA-QC-A7B5-01 12 93968915 93968915 G A SOCS2 Missense_Mutation p.R186K 0.24 deleterious(0.04) probably_damaging(0.99) TCGA-QC-A7B5-01 12 94965469 94965469 G A TMCC3 Silent p.L392L 0.36 TCGA-QC-A7B5-01 12 95907836 95907836 C T METAP2 3'UTR 0.41 TCGA-QC-A7B5-01 12 96310927 96310927 G A CCDC38 Missense_Mutation p.P95L 0.43 tolerated(1) benign(0) TCGA-QC-A7B5-01 12 96883615 96883615 G A C12orf55 Silent p.E76E 0.23 TCGA-QC-A7B5-01 12 96941713 96941713 C T C12orf55 Missense_Mutation p.P704L 0.40 tolerated(0.71) benign(0.014) TCGA-QC-A7B5-01 12 98849450 98849450 C T SLC9A7P1 RNA 0.23 TCGA-QC-A7B5-01 12 98880760 98880760 G A RP11-181C3.1 3'UTR 0.45 TCGA-QC-A7B5-01 13 100635185 100635185 G A ZIC2 Silent p.V289V 0.35 TCGA-QC-A7B5-01 13 100635186 100635186 G A ZIC2 Missense_Mutation p.E290K 0.33 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 13 101256335 101256335 G A TMTC4 3'UTR 0.17 TCGA-QC-A7B5-01 13 102227890 102227890 A G ITGBL1 Missense_Mutation p.I193M 0.29 tolerated(0.11) benign(0.133) TCGA-QC-A7B5-01 13 102375268 102375268 C T FGF14 Silent p.P224P 0.14 TCGA-QC-A7B5-01 13 103384309 103384309 A T CCDC168 Silent p.I1617I 0.22 TCGA-QC-A7B5-01 13 103385281 103385281 G A CCDC168 Silent p.F1293F 0.31 TCGA-QC-A7B5-01 13 103441370 103441370 C T KDELC1 Missense_Mutation p.D429N 0.21 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 13 103518130 103518130 G A BIVM-ERCC5 Missense_Mutation p.E1116K 0.13 tolerated(0.37) benign(0.009) TCGA-QC-A7B5-01 13 103518143 103518145 CTG - BIVM-ERCC5 In_Frame_Del p.A1121del 0.14 TCGA-QC-A7B5-01 13 103547977 103547977 C T METTL21EP RNA 0.19 TCGA-QC-A7B5-01 13 103547978 103547978 C T METTL21EP RNA 0.30 TCGA-QC-A7B5-01 13 108863299 108863299 G A LIG4 Silent p.A106A 0.32 TCGA-QC-A7B5-01 13 109535436 109535436 G A MYO16 Silent p.G463G 0.31 TCGA-QC-A7B5-01 13 109792910 109792910 G A MYO16 Silent p.G1428G 0.31 TCGA-QC-A7B5-01 13 109792911 109792911 G A MYO16 Missense_Mutation p.E1429K 0.31 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-QC-A7B5-01 13 110408587 110408587 G A IRS2 3'UTR 0.15 TCGA-QC-A7B5-01 13 110847415 110847415 C T COL4A1 Missense_Mutation p.G446R 0.32 probably_damaging(0.988) TCGA-QC-A7B5-01 13 111995198 111995198 G A TEX29 Missense_Mutation p.S112N 0.18 tolerated(0.38) benign(0.383) TCGA-QC-A7B5-01 13 112724514 112724514 G A SOX1 3'UTR 0.35 TCGA-QC-A7B5-01 13 112724515 112724515 G A SOX1 3'UTR 0.33 TCGA-QC-A7B5-01 13 113488923 113488923 G A ATP11A Missense_Mutation p.R527K 0.27 tolerated(0.1) benign(0.016) TCGA-QC-A7B5-01 13 113845241 113845241 A G PCID2 Silent p.L192L 0.24 TCGA-QC-A7B5-01 13 21732153 21732153 C T SKA3 Missense_Mutation p.D343N 0.16 deleterious(0.05) benign(0.128) TCGA-QC-A7B5-01 13 23909098 23909098 C T SACS Missense_Mutation p.D2973N 0.23 probably_damaging(0.992) TCGA-QC-A7B5-01 13 24233222 24233222 C T TNFRSF19 Missense_Mutation p.S160F 0.19 deleterious(0.01) possibly_damaging(0.902) TCGA-QC-A7B5-01 13 24233223 24233223 C T TNFRSF19 Silent p.S160S 0.19 TCGA-QC-A7B5-01 13 24797073 24797073 C T SPATA13 Silent p.T2T 0.26 TCGA-QC-A7B5-01 13 25672009 25672009 G A PABPC3 Missense_Mutation p.G558D 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-QC-A7B5-01 13 28979973 28979973 C T FLT1 Missense_Mutation p.G499R 0.23 tolerated(0.35) benign(0.424) TCGA-QC-A7B5-01 13 29600198 29600198 G A MTUS2 Missense_Mutation p.E465K 0.24 tolerated(0.14) benign(0.006) TCGA-QC-A7B5-01 13 31725864 31725864 C T HSPH1 Missense_Mutation p.G182E 0.23 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 13 31725865 31725865 C T HSPH1 Missense_Mutation p.G182R 0.23 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 13 31736211 31736211 G A HSPH1 5'Flank 0.25 TCGA-QC-A7B5-01 13 31821235 31821235 C A B3GALTL Missense_Mutation p.H116N 0.11 tolerated(0.28) benign(0.008) TCGA-QC-A7B5-01 13 32332464 32332464 T C RXFP2 Missense_Mutation p.L55P 0.24 deleterious(0.01) possibly_damaging(0.808) TCGA-QC-A7B5-01 13 32972950 32972950 C T BRCA2 3'UTR 0.39 TCGA-QC-A7B5-01 13 33018251 33018251 C A N4BP2L2 Missense_Mutation p.L141F 0.33 deleterious(0.03) probably_damaging(0.993) TCGA-QC-A7B5-01 13 33350235 33350235 C T PDS5B 3'UTR 0.26 TCGA-QC-A7B5-01 13 33679061 33679061 T A STARD13 3'UTR 0.42 TCGA-QC-A7B5-01 13 36049199 36049199 A T MAB21L1 Silent p.L359L 0.27 TCGA-QC-A7B5-01 13 36223811 36223811 C T NBEA Missense_Mutation p.P2576L 0.17 deleterious(0) possibly_damaging(0.474) TCGA-QC-A7B5-01 13 37269627 37269627 G A SERTM1 3'UTR 0.25 TCGA-QC-A7B5-01 13 37596390 37596390 A C SUPT20H Intron 0.18 TCGA-QC-A7B5-01 13 38266464 38266464 G A TRPC4 Silent p.A302A 0.38 TCGA-QC-A7B5-01 13 38266465 38266465 G A TRPC4 Missense_Mutation p.A302V 0.32 deleterious(0) probably_damaging(0.983) TCGA-QC-A7B5-01 13 39425879 39425879 G A FREM2 Missense_Mutation p.G2267R 0.25 tolerated(0.06) possibly_damaging(0.885) TCGA-QC-A7B5-01 13 41766984 41766984 G A KBTBD7 Silent p.V470V 0.18 TCGA-QC-A7B5-01 13 42773788 42773788 G A DGKH Missense_Mutation p.R791K 0.24 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 13 45957971 45957971 G A TPT1-AS1 Intron 0.45 TCGA-QC-A7B5-01 13 46170969 46170969 C T FAM194B Missense_Mutation p.D58N 0.28 deleterious(0.03) unknown(0) TCGA-QC-A7B5-01 13 49280957 49280957 G T CYSLTR2 Nonsense_Mutation p.E2* 0.18 TCGA-QC-A7B5-01 13 49281074 49281074 T C CYSLTR2 Missense_Mutation p.F41L 0.14 deleterious(0) benign(0.021) TCGA-QC-A7B5-01 13 50129763 50129763 G A RCBTB1 Missense_Mutation p.S164F 0.26 tolerated(0.09) possibly_damaging(0.82) TCGA-QC-A7B5-01 13 50274642 50274642 T C KPNA3 3'UTR 0.35 TCGA-QC-A7B5-01 13 50589130 50589130 G A TRIM13 3'Flank 0.11 TCGA-QC-A7B5-01 13 52439835 52439835 C T CCDC70 Silent p.F107F 0.26 TCGA-QC-A7B5-01 13 66877152 66877152 G A PCDH9 3'UTR 0.23 TCGA-QC-A7B5-01 13 67205408 67205408 C T PCDH9 Missense_Mutation p.E1092K 0.19 deleterious(0.04) benign(0.426) TCGA-QC-A7B5-01 13 67802372 67802372 A T PCDH9 Silent p.V67V 0.21 TCGA-QC-A7B5-01 13 76407265 76407265 G A LMO7 Missense_Mutation p.D777N 0.18 tolerated(0.25) benign(0.1) TCGA-QC-A7B5-01 13 77454451 77454451 A G KCTD12 3'UTR 0.25 TCGA-QC-A7B5-01 13 78171701 78171701 C T SCEL Silent p.I258I 0.27 TCGA-QC-A7B5-01 13 78337361 78337361 T C SLAIN1 3'UTR 0.22 TCGA-QC-A7B5-01 13 86368336 86368336 C T SLITRK6 Missense_Mutation p.G770R 0.33 deleterious(0.02) probably_damaging(0.992) TCGA-QC-A7B5-01 13 88328767 88328767 C T SLITRK5 Missense_Mutation p.P375L 0.27 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 13 92797165 92797165 G A GPC5 Missense_Mutation p.S495N 0.18 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 13 95056010 95056010 T C GPC6 3'UTR 0.31 TCGA-QC-A7B5-01 13 95114318 95114318 G A DCT Missense_Mutation p.S330F 0.21 deleterious(0) possibly_damaging(0.865) TCGA-QC-A7B5-01 13 95230402 95230402 G A TGDS Nonsense_Mutation p.Q228* 0.19 TCGA-QC-A7B5-01 14 102029051 102029051 C T DIO3 3'UTR 0.49 TCGA-QC-A7B5-01 14 102900844 102900844 G A TECPR2 Missense_Mutation p.D564N 0.61 tolerated(1) benign(0.001) TCGA-QC-A7B5-01 14 105409323 105409323 G A AHNAK2 Silent p.S4155S 0.55 TCGA-QC-A7B5-01 14 105409324 105409324 G A AHNAK2 Missense_Mutation p.S4155F 0.54 probably_damaging(0.983) TCGA-QC-A7B5-01 14 106437810 106437810 C T ADAM6 RNA 0.51 TCGA-QC-A7B5-01 14 20848597 20848597 C T TEP1 Silent p.E1600E 0.54 TCGA-QC-A7B5-01 14 20978976 20978976 G A RNASE10 Missense_Mutation p.D116N 0.22 tolerated(0.35) benign(0.011) TCGA-QC-A7B5-01 14 21469209 21469209 C T SLC39A2 Missense_Mutation p.S134L 0.24 tolerated(0.08) benign(0.179) TCGA-QC-A7B5-01 14 21993213 21993213 C T SALL2 Missense_Mutation p.V217M 0.45 tolerated(0.08) possibly_damaging(0.639) TCGA-QC-A7B5-01 14 21993214 21993214 C T SALL2 Silent p.T216T 0.45 TCGA-QC-A7B5-01 14 22133537 22133537 A G OR4E2 Missense_Mutation p.M81V 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-QC-A7B5-01 14 23467848 23467848 C T C14orf93 Missense_Mutation p.E129K 0.26 tolerated_low_confidence(0.22) probably_damaging(0.953) TCGA-QC-A7B5-01 14 23535183 23535183 G A ACIN1 Missense_Mutation p.S825F 0.52 benign(0.009) TCGA-QC-A7B5-01 14 23652009 23652009 C T SLC7A8 Missense_Mutation p.E39K 0.44 tolerated(0.22) benign(0.16) TCGA-QC-A7B5-01 14 23992575 23992575 G A ZFHX2 Silent p.A2192A 0.58 TCGA-QC-A7B5-01 14 24470239 24470241 CAG A DHRS4L2 Splice_Site p.X160_splice 0.32 TCGA-QC-A7B5-01 14 24795084 24795084 C T ADCY4 Silent p.K555K 0.76 TCGA-QC-A7B5-01 14 24900847 24900847 C T KHNYN Missense_Mutation p.A127V 0.40 deleterious(0.03) probably_damaging(0.996) TCGA-QC-A7B5-01 14 24900848 24900848 C T KHNYN Silent p.A127A 0.44 TCGA-QC-A7B5-01 14 26916540 26916540 C T NOVA1 3'UTR 0.52 TCGA-QC-A7B5-01 14 31349897 31349897 G A COCH Missense_Mutation p.G196R 0.54 tolerated(0.24) benign(0.046) TCGA-QC-A7B5-01 14 31364241 31364241 A G COCH 3'Flank 0.23 TCGA-QC-A7B5-01 14 33684485 33684485 C T NPAS3 Missense_Mutation p.L80F 0.69 deleterious(0) possibly_damaging(0.587) TCGA-QC-A7B5-01 14 34269006 34269006 C T NPAS3 Missense_Mutation p.P498L 0.53 tolerated(0.28) benign(0.035) TCGA-QC-A7B5-01 14 34269007 34269007 C T NPAS3 Silent p.P498P 0.53 TCGA-QC-A7B5-01 14 37737910 37737910 C T MIPOL1 Missense_Mutation p.P100L 0.20 deleterious(0) possibly_damaging(0.662) TCGA-QC-A7B5-01 14 47324287 47324287 C T MDGA2 Silent p.G941G 0.53 TCGA-QC-A7B5-01 14 55004467 55004467 C T CGRRF1 Missense_Mutation p.P200S 0.28 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 14 55535029 55535029 C T MAPK1IP1L 3'UTR 0.59 TCGA-QC-A7B5-01 14 55658357 55658357 C T DLGAP5 5'UTR 0.59 TCGA-QC-A7B5-01 14 55903529 55903529 C T TBPL2 Missense_Mutation p.E120K 0.37 tolerated_low_confidence(0.09) benign(0.012) TCGA-QC-A7B5-01 14 56085937 56085937 C A KTN1 Silent p.S290S 0.14 TCGA-QC-A7B5-01 14 58605956 58605956 G A C14orf37 Missense_Mutation p.H41Y 0.60 tolerated(0.75) benign(0.291) TCGA-QC-A7B5-01 14 59113234 59113234 G A DACT1 Silent p.G631G 0.48 TCGA-QC-A7B5-01 14 60928072 60928072 C T C14orf39 Missense_Mutation p.D373N 0.42 tolerated(0.07) possibly_damaging(0.908) TCGA-QC-A7B5-01 14 63174717 63174717 C T KCNH5 Missense_Mutation p.E826K 0.19 tolerated_low_confidence(0.15) benign(0.126) TCGA-QC-A7B5-01 14 63842777 63842777 C T PPP2R5E Missense_Mutation p.D452N 0.53 tolerated(0.24) probably_damaging(0.945) TCGA-QC-A7B5-01 14 64989325 64989325 C T ZBTB1 Missense_Mutation p.P368L 0.62 tolerated(0.19) probably_damaging(0.991) TCGA-QC-A7B5-01 14 66096251 66096251 G A FUT8 Missense_Mutation p.G175E 0.58 deleterious(0) possibly_damaging(0.845) TCGA-QC-A7B5-01 14 69077894 69077894 C T RAD51B Missense_Mutation p.S403F 0.65 tolerated_low_confidence(0.08) unknown(0) TCGA-QC-A7B5-01 14 69254685 69254685 A C ZFP36L1 3'UTR 0.50 TCGA-QC-A7B5-01 14 70515509 70515509 G A SLC8A3 Silent p.F794F 0.20 TCGA-QC-A7B5-01 14 70713787 70713787 T C ADAM21P1 RNA 0.55 TCGA-QC-A7B5-01 14 70926145 70926145 G A ADAM21 Silent p.G643G 0.28 TCGA-QC-A7B5-01 14 72152078 72152078 G A SIPA1L1 Splice_Site p.X1035_splice 0.49 TCGA-QC-A7B5-01 14 73137309 73137309 A T DPF3 3'UTR 0.57 TCGA-QC-A7B5-01 14 73406981 73406981 C T DCAF4 Missense_Mutation p.P83S 0.21 deleterious(0.01) possibly_damaging(0.725) TCGA-QC-A7B5-01 14 73437767 73437767 G A ZFYVE1 Silent p.L719L 0.27 TCGA-QC-A7B5-01 14 73978825 73978825 C T HEATR4 Silent p.E481E 0.59 TCGA-QC-A7B5-01 14 74128706 74128706 A T DNAL1 Missense_Mutation p.T57S 0.24 tolerated(0.29) benign(0.055) TCGA-QC-A7B5-01 14 76488722 76488722 C T IFT43 Missense_Mutation p.S67F 0.31 deleterious(0.05) benign(0.211) TCGA-QC-A7B5-01 14 77292847 77292847 C T C14orf166B Silent p.I3I 0.28 TCGA-QC-A7B5-01 14 77491650 77491650 G A IRF2BPL 3'UTR 0.28 TCGA-QC-A7B5-01 14 77732794 77732794 G A NGB 3'UTR 0.16 TCGA-QC-A7B5-01 14 77844103 77844103 G T SAMD15 Missense_Mutation p.E114D 0.08 tolerated(0.05) possibly_damaging(0.729) TCGA-QC-A7B5-01 14 77929031 77929031 C T AHSA1 Missense_Mutation p.A134V 0.56 tolerated(0.07) benign(0.01) TCGA-QC-A7B5-01 14 88945912 88945912 G C PTPN21 Missense_Mutation p.S621R 0.59 deleterious(0.04) probably_damaging(0.999) TCGA-QC-A7B5-01 14 88974314 88974314 G A PTPN21 Missense_Mutation p.P134L 0.67 tolerated(0.13) possibly_damaging(0.538) TCGA-QC-A7B5-01 14 90769430 90769430 C T NRDE2 Missense_Mutation p.E349K 0.71 tolerated(0.18) benign(0.023) TCGA-QC-A7B5-01 14 93537235 93537235 G A ITPK1 Intron 0.33 TCGA-QC-A7B5-01 14 94088139 94088139 G A UNC79 Silent p.K1343K 0.44 TCGA-QC-A7B5-01 14 94089060 94089060 C T UNC79 Silent p.S1650S 0.44 TCGA-QC-A7B5-01 14 95679645 95679645 G A CLMN Silent p.P173P 0.52 TCGA-QC-A7B5-01 14 96389202 96389202 A G LINC00617 RNA 0.57 TCGA-QC-A7B5-01 14 97313613 97313613 C T VRK1 Silent p.T102T 0.40 TCGA-QC-A7B5-01 14 97313614 97313614 C T VRK1 Missense_Mutation p.R103C 0.40 deleterious(0.03) possibly_damaging(0.56) TCGA-QC-A7B5-01 15 101024834 101024834 C T CERS3 Missense_Mutation p.E110K 0.17 tolerated(0.84) possibly_damaging(0.761) TCGA-QC-A7B5-01 15 102358585 102358585 C T OR4F15 Missense_Mutation p.L66F 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QC-A7B5-01 15 20496719 20496719 T A CHEK2P2 RNA 0.32 TCGA-QC-A7B5-01 15 22742699 22742699 G A GOLGA6L1 Missense_Mutation p.E362K 0.16 unknown(0) TCGA-QC-A7B5-01 15 23191902 23191902 G A WHAMMP3 RNA 0.39 TCGA-QC-A7B5-01 15 25325355 25325355 C T SNORD116-14 RNA 0.54 TCGA-QC-A7B5-01 15 25423754 25423754 C T SNORD115-6 5'Flank 0.55 TCGA-QC-A7B5-01 15 25453150 25453150 C T SNORD115-22 5'Flank 0.50 TCGA-QC-A7B5-01 15 29397681 29397681 G A APBA2 Missense_Mutation p.E542K 0.49 deleterious(0.02) possibly_damaging(0.517) TCGA-QC-A7B5-01 15 30058632 30058632 G A TJP1 Silent p.G142G 0.44 TCGA-QC-A7B5-01 15 34030743 34030743 C T RYR3 Silent p.H2536H 0.24 TCGA-QC-A7B5-01 15 34147010 34147010 G A RYR3 Missense_Mutation p.G4635D 0.57 probably_damaging(0.994) TCGA-QC-A7B5-01 15 41136786 41136786 C T SPINT1 Missense_Mutation p.L12F 0.40 tolerated(0.46) benign(0.002) TCGA-QC-A7B5-01 15 42139646 42139646 C T PLA2G4B Missense_Mutation p.P918S 0.39 tolerated(0.28) possibly_damaging(0.647) TCGA-QC-A7B5-01 15 42437881 42437881 C T PLA2G4F Splice_Site p.X558_splice 0.55 TCGA-QC-A7B5-01 15 43045337 43045337 C T TTBK2 Missense_Mutation p.E703K 0.53 deleterious_low_confidence(0.01) benign(0.235) TCGA-QC-A7B5-01 15 43658600 43658600 C T ZSCAN29 Silent p.R310R 0.33 TCGA-QC-A7B5-01 15 43820614 43820614 G A MAP1A Missense_Mutation p.D2315N 0.64 possibly_damaging(0.474) TCGA-QC-A7B5-01 15 44581550 44581550 A T CASC4 Missense_Mutation p.D108V 0.61 deleterious(0) possibly_damaging(0.826) TCGA-QC-A7B5-01 15 45386853 45386853 G A DUOX2 Missense_Mutation p.R1478W 0.52 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 15 45386854 45386854 G A DUOX2 Silent p.N1477N 0.53 TCGA-QC-A7B5-01 15 45399614 45399614 C A DUOX2 Missense_Mutation p.R541L 0.44 tolerated(0.06) benign(0.373) TCGA-QC-A7B5-01 15 45430157 45430157 G A DUOX1 Missense_Mutation p.R353Q 0.53 tolerated(0.68) benign(0.003) TCGA-QC-A7B5-01 15 48427157 48427157 T C SLC24A5 Missense_Mutation p.I189T 0.47 tolerated(0.3) benign(0.082) TCGA-QC-A7B5-01 15 48434273 48434273 G A SLC24A5 Missense_Mutation p.D410N 0.47 deleterious(0) probably_damaging(0.98) TCGA-QC-A7B5-01 15 49833903 49833903 C T FAM227B Missense_Mutation p.G283E 0.54 deleterious(0.04) probably_damaging(0.993) TCGA-QC-A7B5-01 15 51296074 51296074 C T AP4E1 3'UTR 0.55 TCGA-QC-A7B5-01 15 51535184 51535184 C T CYP19A1 Intron 0.50 TCGA-QC-A7B5-01 15 51535185 51535185 C T CYP19A1 Intron 0.50 TCGA-QC-A7B5-01 15 52015803 52015803 C T LYSMD2 3'UTR 0.61 TCGA-QC-A7B5-01 15 54305772 54305772 T C UNC13C Silent p.N224N 0.50 TCGA-QC-A7B5-01 15 55839183 55839183 C T PYGO1 Missense_Mutation p.G100S 0.45 tolerated(0.07) possibly_damaging(0.784) TCGA-QC-A7B5-01 15 57565394 57565394 C T TCF12 Nonsense_Mutation p.Q638* 0.57 TCGA-QC-A7B5-01 15 57842866 57842866 C T CGNL1 3'UTR 0.33 TCGA-QC-A7B5-01 15 58855853 58855853 G A LIPC Missense_Mutation p.S440N 0.55 tolerated(0.12) benign(0.102) TCGA-QC-A7B5-01 15 59911478 59911478 C T GCNT3 Silent p.P347P 0.45 TCGA-QC-A7B5-01 15 62539252 62539252 C T AC126323.1 5'Flank 0.35 TCGA-QC-A7B5-01 15 65255518 65255518 C T SPG21 3'UTR 0.57 TCGA-QC-A7B5-01 15 65496613 65496613 C T CILP Silent p.V304V 0.33 TCGA-QC-A7B5-01 15 65676587 65676587 C T IGDCC4 Silent p.G1171G 0.48 TCGA-QC-A7B5-01 15 66855888 66855888 G A LCTL Missense_Mutation p.P149L 0.59 deleterious(0) probably_damaging(0.987) TCGA-QC-A7B5-01 15 67709268 67709268 G A IQCH Splice_Site p.X700_splice 0.52 TCGA-QC-A7B5-01 15 67950923 67950923 G C MAP2K5 Missense_Mutation p.E257Q 0.58 tolerated(0.1) possibly_damaging(0.78) TCGA-QC-A7B5-01 15 68124680 68124680 C T SKOR1 Missense_Mutation p.L789F 0.51 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-QC-A7B5-01 15 69011490 69011490 C T CORO2B Missense_Mutation p.S363F 0.26 tolerated(0.05) benign(0.427) TCGA-QC-A7B5-01 15 71184585 71184585 G A THAP10 Silent p.H9H 0.55 TCGA-QC-A7B5-01 15 72455621 72455621 C A GRAMD2 Missense_Mutation p.K314N 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-QC-A7B5-01 15 72456010 72456010 G A GRAMD2 Missense_Mutation p.P230L 0.15 tolerated(0.41) benign(0.001) TCGA-QC-A7B5-01 15 72456011 72456011 G A GRAMD2 Missense_Mutation p.P230S 0.15 tolerated(0.35) benign(0.017) TCGA-QC-A7B5-01 15 75658862 75658862 C T MAN2C1 Splice_Site p.X141_splice 0.25 TCGA-QC-A7B5-01 15 75658863 75658863 C T MAN2C1 Missense_Mutation p.S141N 0.25 tolerated(0.19) benign(0.012) TCGA-QC-A7B5-01 15 76074645 76074645 C T RN7SL319P 5'Flank 0.56 TCGA-QC-A7B5-01 15 77317931 77317931 G A PSTPIP1 Missense_Mutation p.E114K 0.31 tolerated(0.08) probably_damaging(0.98) TCGA-QC-A7B5-01 15 79586497 79586497 C T ANKRD34C Missense_Mutation p.P291S 0.43 tolerated(1) benign(0.006) TCGA-QC-A7B5-01 15 81592358 81592358 C T IL16 Silent p.P897P 0.61 TCGA-QC-A7B5-01 15 81592359 81592359 C T IL16 Nonsense_Mutation p.Q898* 0.59 TCGA-QC-A7B5-01 15 88521398 88521398 G A NTRK3 Intron 0.49 TCGA-QC-A7B5-01 15 90255295 90255295 G A WDR93 Silent p.E200E 0.54 TCGA-QC-A7B5-01 15 90767145 90767145 C T SEMA4B Silent p.L373L 0.58 TCGA-QC-A7B5-01 15 90768599 90768599 C T SEMA4B Silent p.P497P 0.50 TCGA-QC-A7B5-01 15 91027561 91027561 G A IQGAP1 Missense_Mutation p.G1300S 0.53 tolerated(0.42) benign(0.081) TCGA-QC-A7B5-01 15 91027562 91027562 G A IQGAP1 Missense_Mutation p.G1300D 0.53 tolerated(0.22) possibly_damaging(0.459) TCGA-QC-A7B5-01 15 91769448 91769448 G A SV2B 5'UTR 0.28 TCGA-QC-A7B5-01 15 94858766 94858766 G A MCTP2 Silent p.G179G 0.49 TCGA-QC-A7B5-01 16 11035502 11035502 G A DEXI 3'UTR 0.28 TCGA-QC-A7B5-01 16 11133720 11133720 C A CLEC16A Missense_Mutation p.N549K 0.27 tolerated(0.44) benign(0.002) TCGA-QC-A7B5-01 16 11272360 11272360 C T CLEC16A Missense_Mutation p.S992F 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QC-A7B5-01 16 11362868 11362868 C T TNP2 Silent p.K84K 0.32 TCGA-QC-A7B5-01 16 1261180 1261180 G A CACNA1H Silent p.R1412R 0.29 TCGA-QC-A7B5-01 16 1419970 1419970 G A UNKL Intron 0.23 TCGA-QC-A7B5-01 16 1419971 1419971 G A UNKL Intron 0.23 TCGA-QC-A7B5-01 16 1435326 1435326 C T UNKL Missense_Mutation p.A380T 0.33 tolerated(1) benign(0.014) TCGA-QC-A7B5-01 16 14702154 14702154 G A PARN Nonsense_Mutation p.Q215* 0.31 TCGA-QC-A7B5-01 16 1470542 1470542 C G C16orf91 Missense_Mutation p.R192P 0.42 tolerated_low_confidence(0.14) benign(0.026) TCGA-QC-A7B5-01 16 14951142 14951142 T G NOMO1 Silent p.V344V 0.22 TCGA-QC-A7B5-01 16 14951143 14951143 C T NOMO1 Missense_Mutation p.P345S 0.20 tolerated(0.62) benign(0.003) TCGA-QC-A7B5-01 16 15737398 15737398 G A NDE1 5'UTR 0.24 TCGA-QC-A7B5-01 16 17211525 17211525 C T XYLT1 Silent p.S845S 0.22 TCGA-QC-A7B5-01 16 1816257 1816257 C T MAPK8IP3 Missense_Mutation p.P888L 0.38 tolerated(0.15) benign(0.005) TCGA-QC-A7B5-01 16 1831411 1831411 C T SPSB3 Missense_Mutation p.R25Q 0.33 tolerated_low_confidence(0.12) possibly_damaging(0.494) TCGA-QC-A7B5-01 16 19049227 19049227 A C TMC7 Missense_Mutation p.K346T 0.24 deleterious(0.01) possibly_damaging(0.821) TCGA-QC-A7B5-01 16 20043818 20043818 C T GPR139 Missense_Mutation p.D101N 0.30 tolerated(0.53) benign(0.003) TCGA-QC-A7B5-01 16 20554275 20554275 C T ACSM2B Silent p.E490E 0.16 TCGA-QC-A7B5-01 16 20809073 20809073 C T ERI2 Silent p.L683L 0.31 TCGA-QC-A7B5-01 16 2086401 2086401 A G SLC9A3R2 Missense_Mutation p.N164S 0.30 deleterious(0) probably_damaging(0.992) TCGA-QC-A7B5-01 16 22167225 22167225 G A VWA3A 3'UTR 0.32 TCGA-QC-A7B5-01 16 22558154 22558154 G A RP11-368J21.3 RNA 0.16 TCGA-QC-A7B5-01 16 2287477 2287477 G T DNASE1L2 Missense_Mutation p.G140C 0.31 deleterious(0.01) probably_damaging(1) TCGA-QC-A7B5-01 16 2287478 2287478 G A DNASE1L2 Missense_Mutation p.G140D 0.31 tolerated(0.38) probably_damaging(0.999) TCGA-QC-A7B5-01 16 2374521 2374521 G A ABCA3 Missense_Mutation p.P111S 0.16 tolerated(1) benign(0.002) TCGA-QC-A7B5-01 16 240099 240099 C T LUC7L Missense_Mutation p.R281K 0.33 tolerated(0.12) unknown(0) TCGA-QC-A7B5-01 16 24043503 24043503 C T PRKCB Missense_Mutation p.P112L 0.35 tolerated(0.1) probably_damaging(0.948) TCGA-QC-A7B5-01 16 2506847 2506847 C T CCNF Silent p.S729S 0.35 TCGA-QC-A7B5-01 16 25232850 25232850 C T AQP8 Silent p.L111L 0.38 TCGA-QC-A7B5-01 16 25255458 25255458 G A ZKSCAN2 Silent p.F543F 0.28 TCGA-QC-A7B5-01 16 2552617 2552617 C T TBC1D24 3'UTR 0.38 TCGA-QC-A7B5-01 16 26146954 26146954 G A HS3ST4 Silent p.L252L 0.17 TCGA-QC-A7B5-01 16 27503659 27503659 C T GTF3C1 Missense_Mutation p.G1051S 0.37 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 16 27761019 27761019 G T KIAA0556 Missense_Mutation p.R913L 0.16 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 16 2806482 2806482 G A SRRM2 Silent p.E39E 0.33 TCGA-QC-A7B5-01 16 2817350 2817350 G A SRRM2 Missense_Mutation p.R2274K 0.26 probably_damaging(0.983) TCGA-QC-A7B5-01 16 2825483 2825483 G A TCEB2 Silent p.A71A 0.12 TCGA-QC-A7B5-01 16 2835378 2835378 C T PRSS33 Missense_Mutation p.G171E 0.12 deleterious(0.02) probably_damaging(0.938) TCGA-QC-A7B5-01 16 28620618 28620618 C T SULT1A1 Intron 0.13 TCGA-QC-A7B5-01 16 28844425 28844425 C T ATXN2L Missense_Mutation p.P569S 0.32 tolerated(0.28) benign(0.002) TCGA-QC-A7B5-01 16 28912047 28912047 G A ATP2A1 Missense_Mutation p.R637Q 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-QC-A7B5-01 16 28912048 28912048 G A ATP2A1 Silent p.R637R 0.37 TCGA-QC-A7B5-01 16 28915649 28915649 C T ATP2A1 3'UTR 0.45 TCGA-QC-A7B5-01 16 29756041 29756041 C T C16orf54 Missense_Mutation p.G78R 0.32 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-QC-A7B5-01 16 29997004 29997004 C T TAOK2 Missense_Mutation p.P605L 0.46 deleterious(0) benign(0.208) TCGA-QC-A7B5-01 16 30079987 30079987 C T ALDOA Silent p.P169P 0.32 TCGA-QC-A7B5-01 16 30102555 30102555 C T TBX6 5'UTR 0.39 TCGA-QC-A7B5-01 16 30387802 30387802 C A MYLPF Silent p.P77P 0.38 TCGA-QC-A7B5-01 16 30456071 30456071 G A SEPHS2 Silent p.S326S 0.23 TCGA-QC-A7B5-01 16 30567121 30567121 G A ZNF764 Silent p.D207D 0.18 TCGA-QC-A7B5-01 16 30681594 30681594 C T FBRS 3'UTR 0.23 TCGA-QC-A7B5-01 16 30740868 30740868 C T SRCAP Silent p.D2034D 0.22 TCGA-QC-A7B5-01 16 3085461 3085461 G A CCDC64B Missense_Mutation p.P13S 0.24 deleterious(0.02) unknown(0) TCGA-QC-A7B5-01 16 30938630 30938630 C T FBXL19 Missense_Mutation p.P80L 0.17 deleterious(0) probably_damaging(0.927) TCGA-QC-A7B5-01 16 30964794 30964794 A G ORAI3 Missense_Mutation p.K173E 0.34 deleterious(0) probably_damaging(0.997) TCGA-QC-A7B5-01 16 30976497 30976497 G A SETD1A Silent p.E478E 0.25 TCGA-QC-A7B5-01 16 30977487 30977487 C T SETD1A Missense_Mutation p.S762F 0.32 benign(0.265) TCGA-QC-A7B5-01 16 30977488 30977488 C T SETD1A Silent p.S762S 0.34 TCGA-QC-A7B5-01 16 30978303 30978303 G A SETD1A Silent p.K868K 0.36 TCGA-QC-A7B5-01 16 31002591 31002591 G A STX1B 3'UTR 0.14 TCGA-QC-A7B5-01 16 31075147 31075147 G A ZNF668 Missense_Mutation p.R235C 0.51 deleterious(0) probably_damaging(0.957) TCGA-QC-A7B5-01 16 3118197 3118197 G A IL32 Missense_Mutation p.G53D 0.25 tolerated(0.7) benign(0.08) TCGA-QC-A7B5-01 16 31277420 31277420 G A ITGAM Missense_Mutation p.G127R 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-QC-A7B5-01 16 31477383 31477383 C T ARMC5 Intron 0.30 TCGA-QC-A7B5-01 16 31477384 31477384 C T ARMC5 Intron 0.31 TCGA-QC-A7B5-01 16 3163350 3163350 G T ZNF205 Intron 0.31 TCGA-QC-A7B5-01 16 3294266 3294266 C T MEFV Missense_Mutation p.E583K 0.40 tolerated(0.1) benign(0.104) TCGA-QC-A7B5-01 16 3458440 3458440 C T ZNF174 Missense_Mutation p.P249S 0.38 tolerated(0.35) benign(0.054) TCGA-QC-A7B5-01 16 3526270 3526270 C T NAA60 Silent p.L15L 0.25 TCGA-QC-A7B5-01 16 3641302 3641302 C A SLX4 Silent p.V779V 0.54 TCGA-QC-A7B5-01 16 3832702 3832702 C T CREBBP Missense_Mutation p.R519K 0.36 possibly_damaging(0.877) TCGA-QC-A7B5-01 16 4322729 4322729 G A TFAP4 Missense_Mutation p.P7S 0.28 tolerated_low_confidence(0.11) benign(0.032) TCGA-QC-A7B5-01 16 4458230 4458230 G A CORO7 Silent p.F85F 0.32 TCGA-QC-A7B5-01 16 4524349 4524349 G A NMRAL1 5'UTR 0.38 TCGA-QC-A7B5-01 16 4559476 4559476 C T HMOX2 Missense_Mutation p.P254S 0.19 tolerated(0.11) benign(0.033) TCGA-QC-A7B5-01 16 4644704 4644704 G A C16orf96 Splice_Site p.X1010_splice 0.31 TCGA-QC-A7B5-01 16 46615529 46615529 C A SHCBP1 3'UTR 0.78 TCGA-QC-A7B5-01 16 46615533 46615533 T A SHCBP1 3'UTR 0.78 TCGA-QC-A7B5-01 16 4797014 4797014 C T C16orf71 Missense_Mutation p.S423F 0.31 tolerated(0.21) probably_damaging(0.991) TCGA-QC-A7B5-01 16 48234211 48234211 G A ABCC11 Silent p.V686V 0.21 TCGA-QC-A7B5-01 16 4882088 4882088 T C GLYR1 Silent p.G143G 0.14 TCGA-QC-A7B5-01 16 51170836 51170836 T A SALL1 3'UTR 0.37 TCGA-QC-A7B5-01 16 56855473 56855473 C T NUP93 Missense_Mutation p.L208F 0.45 tolerated(0.72) benign(0.006) TCGA-QC-A7B5-01 16 57697426 57697426 C T GPR56 Silent p.L672L 0.22 TCGA-QC-A7B5-01 16 57714230 57714230 G A GPR97 Missense_Mutation p.G241R 0.38 tolerated(0.66) benign(0.003) TCGA-QC-A7B5-01 16 58030805 58030805 C T ZNF319 Silent p.E455E 0.29 TCGA-QC-A7B5-01 16 58079137 58079137 G A MMP15 Silent p.G599G 0.60 TCGA-QC-A7B5-01 16 604458 604458 C T CAPN15 3'UTR 0.14 TCGA-QC-A7B5-01 16 604459 604459 C T CAPN15 3'UTR 0.14 TCGA-QC-A7B5-01 16 633683 633683 G A PIGQ 3'UTR 0.31 TCGA-QC-A7B5-01 16 66646906 66646906 G A CMTM3 3'UTR 0.54 TCGA-QC-A7B5-01 16 66887673 66887673 C T CA7 3'UTR 0.58 TCGA-QC-A7B5-01 16 66921345 66921345 C T PDP2 3'UTR 0.56 TCGA-QC-A7B5-01 16 67318357 67318357 G A PLEKHG4 Silent p.R563R 0.58 TCGA-QC-A7B5-01 16 67318358 67318358 G A PLEKHG4 Missense_Mutation p.E564K 0.58 tolerated(0.33) benign(0.002) TCGA-QC-A7B5-01 16 67913638 67913638 A C EDC4 Silent p.T594T 0.39 TCGA-QC-A7B5-01 16 67914702 67914702 C T EDC4 Silent p.S780S 0.50 TCGA-QC-A7B5-01 16 68057728 68057728 C G DDX28 5'UTR 0.45 TCGA-QC-A7B5-01 16 68405671 68405671 G A SMPD3 Silent p.L138L 0.33 TCGA-QC-A7B5-01 16 701746 701746 C T WDR90 Missense_Mutation p.A280V 0.35 tolerated(0.15) benign(0.002) TCGA-QC-A7B5-01 16 70208238 70208238 C T CLEC18C Silent p.A19A 0.37 TCGA-QC-A7B5-01 16 70942261 70942261 C T HYDIN Missense_Mutation p.G2764R 0.40 probably_damaging(0.991) TCGA-QC-A7B5-01 16 70977834 70977834 G A HYDIN Missense_Mutation p.P2184S 0.46 benign(0.234) TCGA-QC-A7B5-01 16 72822522 72822522 G A ZFHX3 Missense_Mutation p.P3218L 0.62 unknown(0) TCGA-QC-A7B5-01 16 731289 731289 C T STUB1 Silent p.F99F 0.35 TCGA-QC-A7B5-01 16 740319 740319 G A WDR24 5'UTR 0.34 TCGA-QC-A7B5-01 16 740320 740320 G A WDR24 5'UTR 0.35 TCGA-QC-A7B5-01 16 75579824 75579824 C T TMEM231 Missense_Mutation p.G142E 0.39 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 16 7568218 7568218 C T RBFOX1 Missense_Mutation p.P53S 0.35 deleterious(0.04) possibly_damaging(0.615) TCGA-QC-A7B5-01 16 80583535 80583535 C T DYNLRB2 Silent p.I78I 0.19 TCGA-QC-A7B5-01 16 81412406 81412406 C T GAN 3'UTR 0.59 TCGA-QC-A7B5-01 16 830165 830165 G A MSLNL Missense_Mutation p.P279L 0.23 possibly_damaging(0.803) TCGA-QC-A7B5-01 16 84812586 84812586 C T USP10 Silent p.I765I 0.18 TCGA-QC-A7B5-01 16 85010006 85010006 G A ZDHHC7 Silent p.F327F 0.65 TCGA-QC-A7B5-01 16 87734445 87734445 C T FLJ00104 3'UTR 0.37 TCGA-QC-A7B5-01 16 90160890 90160890 C T TUBB8P7 RNA 0.53 TCGA-QC-A7B5-01 17 10432355 10432355 C T MYH2 Silent p.R1132R 0.14 TCGA-QC-A7B5-01 17 11269 11269 G A DOC2B Silent p.P234P 0.36 TCGA-QC-A7B5-01 17 11461947 11461947 C T SHISA6 3'UTR 0.21 TCGA-QC-A7B5-01 17 11672548 11672548 C T DNAH9 Missense_Mutation p.S2485L 0.22 probably_damaging(0.909) TCGA-QC-A7B5-01 17 11795159 11795159 G A DNAH9 Silent p.R3726R 0.31 TCGA-QC-A7B5-01 17 12626276 12626276 G A MYOCD Silent p.V122V 0.31 TCGA-QC-A7B5-01 17 12639486 12639486 G T MYOCD Missense_Mutation p.V142L 0.18 tolerated(0.34) possibly_damaging(0.477) TCGA-QC-A7B5-01 17 13399881 13399881 G A HS3ST3A1 Missense_Mutation p.A285V 0.15 deleterious(0.02) possibly_damaging(0.496) TCGA-QC-A7B5-01 17 1538895 1538895 G A SCARF1 Silent p.A550A 0.36 TCGA-QC-A7B5-01 17 1557276 1557276 G A PRPF8 Nonsense_Mutation p.R2008* 0.19 TCGA-QC-A7B5-01 17 16220140 16220140 T C PIGL Intron 0.38 TCGA-QC-A7B5-01 17 16470890 16470890 A G ZNF287 Silent p.F52F 0.22 TCGA-QC-A7B5-01 17 1704154 1704154 G A SMYD4 Silent p.A178A 0.17 TCGA-QC-A7B5-01 17 17701767 17701767 C T RAI1 Silent p.V1835V 0.24 TCGA-QC-A7B5-01 17 17969029 17969029 C T GID4 3'UTR 0.28 TCGA-QC-A7B5-01 17 18054156 18054156 G A MYO15A Missense_Mutation p.E2468K 0.11 unknown(0) TCGA-QC-A7B5-01 17 18874837 18874837 G T FAM83G Silent p.P769P 0.34 TCGA-QC-A7B5-01 17 18874838 18874838 G A FAM83G Missense_Mutation p.P769L 0.34 tolerated(0.24) benign(0.001) TCGA-QC-A7B5-01 17 18881549 18881549 G A FAM83G Missense_Mutation p.P477L 0.36 tolerated(0.06) benign(0.026) TCGA-QC-A7B5-01 17 19286474 19286474 C T MAPK7 Missense_Mutation p.S794F 0.42 deleterious(0) probably_damaging(0.986) TCGA-QC-A7B5-01 17 19286475 19286475 C T MAPK7 Silent p.S794S 0.42 TCGA-QC-A7B5-01 17 19451344 19451344 G A SLC47A1 Missense_Mutation p.R118Q 0.33 deleterious(0.01) possibly_damaging(0.73) TCGA-QC-A7B5-01 17 1961396 1961396 G A HIC1 Missense_Mutation p.G490E 0.33 tolerated(0.11) possibly_damaging(0.573) TCGA-QC-A7B5-01 17 19689318 19689318 C T ULK2 Missense_Mutation p.G728E 0.30 deleterious(0) possibly_damaging(0.57) TCGA-QC-A7B5-01 17 20217321 20217321 C A SPECC1 Silent p.P1050P 0.26 TCGA-QC-A7B5-01 17 2075957 2075957 C A SMG6 Missense_Mutation p.D1118Y 0.61 deleterious(0) possibly_damaging(0.713) TCGA-QC-A7B5-01 17 2075958 2075958 C T SMG6 Silent p.S1117S 0.61 TCGA-QC-A7B5-01 17 21102021 21102021 A G TMEM11 Silent p.T65T 0.32 TCGA-QC-A7B5-01 17 21322516 21322516 T A KCNJ12 3'UTR 0.35 TCGA-QC-A7B5-01 17 26206542 26206542 G A LYRM9 Intron 0.29 TCGA-QC-A7B5-01 17 26675195 26675195 G A POLDIP2 Missense_Mutation p.S351F 0.30 deleterious(0.01) possibly_damaging(0.905) TCGA-QC-A7B5-01 17 26695641 26695641 C G VTN Missense_Mutation p.E294Q 0.42 tolerated(0.11) possibly_damaging(0.612) TCGA-QC-A7B5-01 17 26864307 26864307 G A FOXN1 Silent p.P600P 0.22 TCGA-QC-A7B5-01 17 26955286 26955286 C T KIAA0100 Missense_Mutation p.G1531R 0.31 tolerated(0.15) benign(0.028) TCGA-QC-A7B5-01 17 27068497 27068497 G A NEK8 Missense_Mutation p.G653E 0.30 tolerated_low_confidence(0.2) benign(0.112) TCGA-QC-A7B5-01 17 27086287 27086287 G A FAM222B Silent p.G230G 0.40 TCGA-QC-A7B5-01 17 27414025 27414025 G A MYO18A Missense_Mutation p.R1881W 0.27 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 17 27414026 27414026 G A MYO18A Silent p.L1880L 0.30 TCGA-QC-A7B5-01 17 27591062 27591062 C T NUFIP2 3'UTR 0.33 TCGA-QC-A7B5-01 17 27900853 27900853 G A GIT1 3'UTR 0.28 TCGA-QC-A7B5-01 17 27958927 27958927 C T SSH2 Silent p.Q1068Q 0.39 TCGA-QC-A7B5-01 17 2921430 2921430 C T RAP1GAP2 Missense_Mutation p.P524S 0.32 tolerated(0.49) benign(0.019) TCGA-QC-A7B5-01 17 29233259 29233259 C T TEFM 5'UTR 0.39 TCGA-QC-A7B5-01 17 29859161 29859161 C T RAB11FIP4 3'UTR 0.29 TCGA-QC-A7B5-01 17 3101036 3101036 C T OR1A2 Missense_Mutation p.S75F 0.27 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 17 33266335 33266335 G A CCT6B Silent p.F360F 0.39 TCGA-QC-A7B5-01 17 33767962 33767962 G A SLFN13 Silent p.N782N 0.36 TCGA-QC-A7B5-01 17 33772137 33772137 G A SLFN13 Missense_Mutation p.P188L 0.29 tolerated(0.68) benign(0.015) TCGA-QC-A7B5-01 17 33772138 33772138 G A SLFN13 Missense_Mutation p.P188S 0.30 tolerated(0.81) benign(0.168) TCGA-QC-A7B5-01 17 3386821 3386821 T C ASPA Missense_Mutation p.V154A 0.44 tolerated(0.06) benign(0.034) TCGA-QC-A7B5-01 17 34842501 34842501 G A ZNHIT3 5'UTR 0.28 TCGA-QC-A7B5-01 17 3494426 3494426 G A TRPV1 Intron 0.37 TCGA-QC-A7B5-01 17 3552211 3552211 G A CTNS Missense_Mutation p.E71K 0.33 tolerated(0.14) benign(0.013) TCGA-QC-A7B5-01 17 35939377 35939377 G A SYNRG Intron 0.16 TCGA-QC-A7B5-01 17 36093708 36093708 C T HNF1B Silent p.G217G 0.26 TCGA-QC-A7B5-01 17 36484307 36484307 C T GPR179 Silent p.E1715E 0.24 TCGA-QC-A7B5-01 17 36688419 36688419 C T SRCIN1 3'UTR 0.33 TCGA-QC-A7B5-01 17 36882156 36882156 G T MLLT6 3'UTR 0.31 TCGA-QC-A7B5-01 17 36884919 36884919 G A MLLT6 3'UTR 0.56 TCGA-QC-A7B5-01 17 37330561 37330561 C T CACNB1 3'UTR 0.32 TCGA-QC-A7B5-01 17 37330562 37330562 C T CACNB1 3'UTR 0.32 TCGA-QC-A7B5-01 17 37563928 37563928 G A MED1 Missense_Mutation p.R1516W 0.33 deleterious_low_confidence(0) unknown(0) TCGA-QC-A7B5-01 17 37627629 37627629 C T CDK12 Missense_Mutation p.P515L 0.37 benign(0.108) TCGA-QC-A7B5-01 17 3765286 3765286 G A CAMKK1 3'Flank 0.15 TCGA-QC-A7B5-01 17 3785649 3785649 G A CAMKK1 Missense_Mutation p.A234V 0.15 tolerated_low_confidence(0.1) benign(0.001) TCGA-QC-A7B5-01 17 38153883 38153883 C T PSMD3 3'UTR 0.41 TCGA-QC-A7B5-01 17 38246289 38246289 G A THRA Intron 0.28 TCGA-QC-A7B5-01 17 38256876 38256876 C T NR1D1 5'UTR 0.29 TCGA-QC-A7B5-01 17 3853882 3853882 C G ATP2A3 Missense_Mutation p.V185L 0.41 tolerated(0.11) benign(0.009) TCGA-QC-A7B5-01 17 38610307 38610307 C T IGFBP4 Missense_Mutation p.P212L 0.31 tolerated(0.14) benign(0.216) TCGA-QC-A7B5-01 17 38610308 38610308 C T IGFBP4 Silent p.P212P 0.30 TCGA-QC-A7B5-01 17 38975339 38975339 G A KRT10 Missense_Mutation p.S483F 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-QC-A7B5-01 17 39022967 39022967 G A KRT12 Nonsense_Mutation p.R158* 0.13 TCGA-QC-A7B5-01 17 39032616 39032616 G A KRT20 Silent p.I424I 0.12 TCGA-QC-A7B5-01 17 39643899 39643899 C T KRT36 Missense_Mutation p.D264N 0.31 deleterious(0) benign(0.025) TCGA-QC-A7B5-01 17 39739349 39739349 C T KRT14 Missense_Mutation p.D440N 0.40 tolerated(0.16) benign(0.009) TCGA-QC-A7B5-01 17 39739693 39739693 C T KRT14 Silent p.E356E 0.26 TCGA-QC-A7B5-01 17 39739832 39739832 C T KRT14 Missense_Mutation p.E342K 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-QC-A7B5-01 17 39739833 39739833 C T KRT14 Silent p.L341L 0.24 TCGA-QC-A7B5-01 17 39888487 39888487 C T HAP1 Missense_Mutation p.E237K 0.32 tolerated(0.06) benign(0.135) TCGA-QC-A7B5-01 17 39888488 39888488 C T HAP1 Silent p.K236K 0.32 TCGA-QC-A7B5-01 17 39925777 39925777 G A JUP Nonsense_Mutation p.Q121* 0.38 TCGA-QC-A7B5-01 17 40075238 40075238 C T ACLY 5'UTR 0.24 TCGA-QC-A7B5-01 17 40120360 40120360 G A CNP Missense_Mutation p.R93Q 0.47 tolerated(0.2) benign(0.029) TCGA-QC-A7B5-01 17 40128496 40128496 T C DNAJC7 3'UTR 0.35 TCGA-QC-A7B5-01 17 40466789 40466789 C T STAT3 3'UTR 0.23 TCGA-QC-A7B5-01 17 40717723 40717723 C T COASY Missense_Mutation p.A540V 0.31 deleterious(0) benign(0.191) TCGA-QC-A7B5-01 17 40940798 40940798 G A WNK4 Missense_Mutation p.E714K 0.43 deleterious(0) unknown(0) TCGA-QC-A7B5-01 17 41290786 41290786 C T NBR2 RNA 0.15 TCGA-QC-A7B5-01 17 41570931 41570931 G T DHX8 Missense_Mutation p.G328W 0.11 deleterious(0.01) possibly_damaging(0.751) TCGA-QC-A7B5-01 17 41571141 41571141 C T DHX8 Missense_Mutation p.P367S 0.20 tolerated(0.23) benign(0.41) TCGA-QC-A7B5-01 17 41926258 41926258 C T CD300LG Missense_Mutation p.P126S 0.11 tolerated(0.11) benign(0.112) TCGA-QC-A7B5-01 17 41926259 41926259 C T CD300LG Missense_Mutation p.P126L 0.11 deleterious(0) possibly_damaging(0.581) TCGA-QC-A7B5-01 17 41954476 41954476 A C MPP2 3'UTR 0.46 TCGA-QC-A7B5-01 17 42269400 42269400 A T ATXN7L3 3'UTR 0.25 TCGA-QC-A7B5-01 17 42271725 42271727 AGG GA ATXN7L3 Frame_Shift_Del p.L324Rfs*2 0.29 TCGA-QC-A7B5-01 17 42399810 42399810 G A SLC25A39 Missense_Mutation p.P101S 0.38 tolerated(0.06) possibly_damaging(0.574) TCGA-QC-A7B5-01 17 42429921 42429921 C T GRN Silent p.A542A 0.30 TCGA-QC-A7B5-01 17 42452037 42452037 C A ITGA2B Missense_Mutation p.G978V 0.46 deleterious(0.03) probably_damaging(1) TCGA-QC-A7B5-01 17 42477239 42477239 G A GPATCH8 Missense_Mutation p.P736S 0.30 tolerated_low_confidence(0.37) probably_damaging(0.968) TCGA-QC-A7B5-01 17 42829220 42829220 C T DBF4B 3'UTR 0.15 TCGA-QC-A7B5-01 17 42937396 42937396 G A EFTUD2 Silent p.P579P 0.34 TCGA-QC-A7B5-01 17 42981923 42981923 C T FAM187A Silent p.P242P 0.19 TCGA-QC-A7B5-01 17 43013578 43013578 G A KIF18B Silent p.P45P 0.12 TCGA-QC-A7B5-01 17 43320530 43320530 C T FMNL1 Nonsense_Mutation p.Q686* 0.25 TCGA-QC-A7B5-01 17 43528023 43528023 C T PLEKHM1 Silent p.P868P 0.38 TCGA-QC-A7B5-01 17 44039689 44039689 G A MAPT Intron 0.26 TCGA-QC-A7B5-01 17 45760599 45760599 C T KPNB1 3'UTR 0.21 TCGA-QC-A7B5-01 17 45760600 45760600 C T KPNB1 3'UTR 0.22 TCGA-QC-A7B5-01 17 45777023 45777023 G A TBKBP1 Missense_Mutation p.E278K 0.41 deleterious(0.01) possibly_damaging(0.846) TCGA-QC-A7B5-01 17 45819979 45819979 G A TBX21 Silent p.R165R 0.28 TCGA-QC-A7B5-01 17 46199332 46199332 C T SNX11 3'UTR 0.18 TCGA-QC-A7B5-01 17 46865262 46865262 C T TTLL6 Silent p.L500L 0.37 TCGA-QC-A7B5-01 17 4701409 4701409 G A PSMB6 Missense_Mutation p.G180S 0.21 deleterious(0.02) benign(0.118) TCGA-QC-A7B5-01 17 47122427 47122427 G A IGF2BP1 Silent p.K465K 0.33 TCGA-QC-A7B5-01 17 47131769 47131769 G A IGF2BP1 3'UTR 0.25 TCGA-QC-A7B5-01 17 47218739 47218739 C T B4GALNT2 Missense_Mutation p.P109S 0.30 tolerated(0.17) benign(0.051) TCGA-QC-A7B5-01 17 47218740 47218740 C T B4GALNT2 Missense_Mutation p.P109L 0.30 tolerated(0.29) benign(0.001) TCGA-QC-A7B5-01 17 47241525 47241525 G A B4GALNT2 Missense_Mutation p.R341Q 0.35 tolerated(0.76) benign(0.01) TCGA-QC-A7B5-01 17 47484200 47484200 C T PHB Missense_Mutation p.G176E 0.33 deleterious(0) probably_damaging(0.965) TCGA-QC-A7B5-01 17 47484201 47484201 C T PHB Missense_Mutation p.G176R 0.31 deleterious(0.04) possibly_damaging(0.504) TCGA-QC-A7B5-01 17 4805222 4805222 C T CHRNE Intron 0.32 TCGA-QC-A7B5-01 17 48212145 48212145 G A PPP1R9B 3'UTR 0.20 TCGA-QC-A7B5-01 17 48434521 48434521 C T XYLT2 Missense_Mutation p.P617S 0.35 tolerated(0.32) benign(0.029) TCGA-QC-A7B5-01 17 48560723 48560723 C T RSAD1 Silent p.P309P 0.44 TCGA-QC-A7B5-01 17 48560724 48560724 C T RSAD1 Nonsense_Mutation p.Q310* 0.44 TCGA-QC-A7B5-01 17 48562159 48562159 C T RSAD1 Silent p.T422T 0.33 TCGA-QC-A7B5-01 17 48753302 48753302 C T ABCC3 Missense_Mutation p.A973V 0.39 tolerated(0.51) benign(0.02) TCGA-QC-A7B5-01 17 48753303 48753303 C T ABCC3 Silent p.A973A 0.40 TCGA-QC-A7B5-01 17 49075915 49075915 C T SPAG9 Silent p.L576L 0.31 TCGA-QC-A7B5-01 17 49708928 49708928 C T CA10 3'UTR 0.22 TCGA-QC-A7B5-01 17 5009422 5009422 T C ZNF232 Silent p.S344S 0.24 TCGA-QC-A7B5-01 17 5042392 5042392 C T USP6 Intron 0.12 TCGA-QC-A7B5-01 17 56276507 56276507 G A EPX Nonsense_Mutation p.W409* 0.26 TCGA-QC-A7B5-01 17 56386603 56386603 C A BZRAP1 Nonsense_Mutation p.E1344* 0.33 TCGA-QC-A7B5-01 17 56634352 56634352 C T TEX14 3'UTR 0.32 TCGA-QC-A7B5-01 17 56649426 56649426 A T TEX14 Silent p.V1237V 0.33 TCGA-QC-A7B5-01 17 57430744 57430744 G A YPEL2 5'UTR 0.29 TCGA-QC-A7B5-01 17 58603353 58603353 C T APPBP2 5'UTR 0.37 TCGA-QC-A7B5-01 17 59820425 59820425 G A BRIP1 Silent p.A776A 0.33 TCGA-QC-A7B5-01 17 59942735 59942735 G A INTS2 3'UTR 0.36 TCGA-QC-A7B5-01 17 60743898 60743898 G A MRC2 Nonsense_Mutation p.W259* 0.31 TCGA-QC-A7B5-01 17 61493011 61493011 C T TANC2 Silent p.L1297L 0.23 TCGA-QC-A7B5-01 17 61558520 61558520 C T ACE Missense_Mutation p.L306F 0.10 deleterious(0.04) probably_damaging(0.949) TCGA-QC-A7B5-01 17 618065 618065 G A VPS53 5'UTR 0.71 TCGA-QC-A7B5-01 17 61937379 61937379 C T TCAM1P RNA 0.23 TCGA-QC-A7B5-01 17 61951078 61951078 T C CSH2 5'UTR 0.26 TCGA-QC-A7B5-01 17 62892267 62892267 G A LRRC37A3 Missense_Mutation p.S370F 0.14 deleterious(0.02) possibly_damaging(0.656) TCGA-QC-A7B5-01 17 64801061 64801061 A T PRKCA 3'UTR 0.40 TCGA-QC-A7B5-01 17 64881281 64881281 C T CACNG5 Missense_Mutation p.S251F 0.31 deleterious_low_confidence(0) possibly_damaging(0.895) TCGA-QC-A7B5-01 17 65028979 65028979 C T CACNG4 3'UTR 0.26 TCGA-QC-A7B5-01 17 6555925 6555925 A T C17orf100 3'UTR 0.40 TCGA-QC-A7B5-01 17 65862671 65862671 G A BPTF Missense_Mutation p.D510N 0.37 benign(0.041) TCGA-QC-A7B5-01 17 65940483 65940483 C T BPTF Missense_Mutation p.A2232V 0.29 benign(0.06) TCGA-QC-A7B5-01 17 65962707 65962707 C T BPTF Missense_Mutation p.P2825L 0.36 probably_damaging(0.998) TCGA-QC-A7B5-01 17 66426158 66426158 C T WIPI1 Missense_Mutation p.R315K 0.07 tolerated(0.95) benign(0.002) TCGA-QC-A7B5-01 17 6703490 6703490 G A TEKT1 Silent p.A371A 0.30 TCGA-QC-A7B5-01 17 67519705 67519705 T A MAP2K6 Missense_Mutation p.C196S 0.23 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 17 68101008 68101008 C T KCNJ16 5'UTR 0.12 TCGA-QC-A7B5-01 17 685779 685779 C T RNMTL1 Missense_Mutation p.P54L 0.24 tolerated(0.07) benign(0.221) TCGA-QC-A7B5-01 17 7096860 7096860 G A DLG4 Silent p.D588D 0.38 TCGA-QC-A7B5-01 17 7147430 7147430 G A CTDNEP1 3'UTR 0.45 TCGA-QC-A7B5-01 17 7191706 7191706 G A YBX2 3'UTR 0.36 TCGA-QC-A7B5-01 17 7229606 7229606 C T NEURL4 Missense_Mutation p.E421K 0.34 deleterious(0.01) probably_damaging(0.993) TCGA-QC-A7B5-01 17 72436505 72436505 C T GPRC5C Missense_Mutation p.A242V 0.31 tolerated(0.43) benign(0.008) TCGA-QC-A7B5-01 17 72915934 72915934 C T USH1G Missense_Mutation p.D333N 0.14 tolerated(0.09) benign(0.001) TCGA-QC-A7B5-01 17 72915947 72915947 T A USH1G Silent p.G328G 0.27 TCGA-QC-A7B5-01 17 73060189 73060189 C T KCTD2 3'UTR 0.40 TCGA-QC-A7B5-01 17 73163979 73163979 C T SUMO2 3'UTR 0.34 TCGA-QC-A7B5-01 17 7320508 7320508 C T NLGN2 Missense_Mutation p.P633L 0.48 tolerated(0.15) benign(0.015) TCGA-QC-A7B5-01 17 73221887 73221887 C T NUP85 Missense_Mutation p.P317L 0.31 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 17 73227683 73227683 G A NUP85 Missense_Mutation p.M398I 0.39 deleterious(0.02) benign(0.069) TCGA-QC-A7B5-01 17 73234804 73234804 G A GGA3 Missense_Mutation p.L664F 0.31 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 17 73258138 73258138 C T MRPS7 Intron 0.40 TCGA-QC-A7B5-01 17 73489030 73489030 G A KIAA0195 Missense_Mutation p.E645K 0.35 tolerated(0.15) benign(0.119) TCGA-QC-A7B5-01 17 73498253 73498253 C T CASKIN2 Missense_Mutation p.G968S 0.42 deleterious(0.02) probably_damaging(0.986) TCGA-QC-A7B5-01 17 73504326 73504326 C T CASKIN2 Silent p.Q45Q 0.33 TCGA-QC-A7B5-01 17 73559835 73559835 C A LLGL2 Missense_Mutation p.P277T 0.32 deleterious(0.02) benign(0.084) TCGA-QC-A7B5-01 17 73587793 73587793 G A MYO15B Silent p.Q102Q 0.41 TCGA-QC-A7B5-01 17 73941763 73941763 C T ACOX1 3'UTR 0.26 TCGA-QC-A7B5-01 17 73941764 73941764 C T ACOX1 3'UTR 0.26 TCGA-QC-A7B5-01 17 74007888 74007888 G A EVPL Nonsense_Mutation p.R845* 0.40 TCGA-QC-A7B5-01 17 74395724 74395724 C T UBE2O Silent p.Q478Q 0.32 TCGA-QC-A7B5-01 17 74474927 74474927 C T RHBDF2 Silent p.V240V 0.43 TCGA-QC-A7B5-01 17 7487163 7487163 G A MPDU1 5'UTR 0.29 TCGA-QC-A7B5-01 17 75186902 75186902 C T SEC14L1 Silent p.F27F 0.38 TCGA-QC-A7B5-01 17 7533563 7533563 C T SHBG Missense_Mutation p.R25C 0.33 tolerated(0.14) benign(0) TCGA-QC-A7B5-01 17 7556703 7556703 C T ATP1B2 Missense_Mutation p.L42F 0.19 deleterious(0.02) benign(0.376) TCGA-QC-A7B5-01 17 7577082 7577082 C T TP53 Missense_Mutation p.E286K 0.51 deleterious(0) probably_damaging(0.982) TCGA-QC-A7B5-01 17 7606658 7606658 C T WRAP53 Missense_Mutation p.P501S 0.22 tolerated(0.07) probably_damaging(0.948) TCGA-QC-A7B5-01 17 76160461 76160461 G A C17orf99 Intron 0.21 TCGA-QC-A7B5-01 17 76235311 76235311 C T TMEM235 Missense_Mutation p.P206S 0.29 deleterious(0.05) benign(0.002) TCGA-QC-A7B5-01 17 76355018 76355018 G A SOCS3 Silent p.G53G 0.38 TCGA-QC-A7B5-01 17 76392430 76392430 C T PGS1 Silent p.S125S 0.28 TCGA-QC-A7B5-01 17 76424752 76424752 C T DNAH17 Missense_Mutation p.E4142K 0.33 possibly_damaging(0.903) TCGA-QC-A7B5-01 17 76430152 76430152 G A DNAH17 Silent p.I4055I 0.31 TCGA-QC-A7B5-01 17 7734590 7734590 G A DNAH2 Silent p.Q4139Q 0.23 TCGA-QC-A7B5-01 17 7750915 7750915 C T KDM6B Missense_Mutation p.R437C 0.30 unknown(0) TCGA-QC-A7B5-01 17 78081460 78081460 C T GAA Missense_Mutation p.P266L 0.25 deleterious(0.03) possibly_damaging(0.477) TCGA-QC-A7B5-01 17 78349617 78349617 G A RNF213 Missense_Mutation p.E4378K 0.36 possibly_damaging(0.887) TCGA-QC-A7B5-01 17 78409984 78409984 C T ENDOV 3'UTR 0.29 TCGA-QC-A7B5-01 17 78410953 78410953 C T ENDOV 3'UTR 0.28 TCGA-QC-A7B5-01 17 78410954 78410954 C T ENDOV 3'UTR 0.28 TCGA-QC-A7B5-01 17 78444746 78444746 C T NPTX1 Missense_Mutation p.G389E 0.44 tolerated(0.62) benign(0.071) TCGA-QC-A7B5-01 17 79671380 79671380 C T SLC25A10 Missense_Mutation p.P61S 0.31 tolerated_low_confidence(0.73) benign(0.001) TCGA-QC-A7B5-01 17 79671381 79671381 C T SLC25A10 Missense_Mutation p.P61L 0.30 deleterious_low_confidence(0) benign(0.074) TCGA-QC-A7B5-01 17 79826449 79826449 G A ARHGDIA 3'UTR 0.53 TCGA-QC-A7B5-01 17 79891160 79891160 C T PYCR1 Missense_Mutation p.G297E 0.23 tolerated_low_confidence(0.18) benign(0.002) TCGA-QC-A7B5-01 17 79977184 79977184 C T STRA13 Silent p.K72K 0.38 TCGA-QC-A7B5-01 17 80115649 80115649 G A CCDC57 Missense_Mutation p.S739L 0.34 tolerated(0.28) benign(0.006) TCGA-QC-A7B5-01 17 8020268 8020268 C T ALOXE3 Missense_Mutation p.E192K 0.15 deleterious(0.01) possibly_damaging(0.627) TCGA-QC-A7B5-01 17 8046952 8046952 G A PER1 Missense_Mutation p.P902S 0.41 tolerated(0.07) benign(0.002) TCGA-QC-A7B5-01 17 8077440 8077440 C T TMEM107 3'UTR 0.43 TCGA-QC-A7B5-01 17 8296715 8296715 C T RNF222 Missense_Mutation p.R22Q 0.30 tolerated(0.63) probably_damaging(0.957) TCGA-QC-A7B5-01 17 8726794 8726794 G A PIK3R6 Silent p.S512S 0.25 TCGA-QC-A7B5-01 18 12463462 12463462 G A SPIRE1 Missense_Mutation p.T509I 0.42 tolerated(0.12) probably_damaging(0.997) TCGA-QC-A7B5-01 18 12463463 12463463 T A SPIRE1 Missense_Mutation p.T509S 0.41 tolerated(0.24) probably_damaging(0.993) TCGA-QC-A7B5-01 18 12698873 12698873 C T PSMG2 5'Flank 0.23 TCGA-QC-A7B5-01 18 19079818 19079818 G A GREB1L Missense_Mutation p.A1174T 0.15 tolerated(0.68) benign(0.225) TCGA-QC-A7B5-01 18 19781056 19781056 C A GATA6 3'UTR 0.36 TCGA-QC-A7B5-01 18 20572926 20572926 C T RBBP8 Missense_Mutation p.S379F 0.21 deleterious(0) probably_damaging(0.987) TCGA-QC-A7B5-01 18 21087014 21087017 CTGT TTG C18orf8 Frame_Shift_Del p.T87Ifs*28 0.19 TCGA-QC-A7B5-01 18 21109648 21109648 C T C18orf8 Missense_Mutation p.S489F 0.31 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 18 21134910 21134910 G A NPC1 Silent p.A455A 0.36 TCGA-QC-A7B5-01 18 21180704 21180704 C T ANKRD29 3'UTR 0.24 TCGA-QC-A7B5-01 18 21437869 21437869 C T LAMA3 Missense_Mutation p.P1400S 0.17 probably_damaging(1) TCGA-QC-A7B5-01 18 2946312 2946312 G A LPIN2 Intron 0.21 TCGA-QC-A7B5-01 18 31320396 31320396 C G ASXL3 Missense_Mutation p.P1010A 0.24 probably_damaging(0.998) TCGA-QC-A7B5-01 18 31323276 31323276 C T ASXL3 Missense_Mutation p.S1155L 0.63 benign(0.027) TCGA-QC-A7B5-01 18 33607240 33607240 C T RPRD1A Missense_Mutation p.E174K 0.65 deleterious(0) probably_damaging(0.95) TCGA-QC-A7B5-01 18 40500701 40500701 C T RIT2 Intron 0.69 TCGA-QC-A7B5-01 18 43497657 43497657 G A EPG5 Silent p.L1076L 0.40 TCGA-QC-A7B5-01 18 44559473 44559473 C T TCEB3B Silent p.A721A 0.21 TCGA-QC-A7B5-01 18 45368180 45368180 G A SMAD2 3'UTR 0.58 TCGA-QC-A7B5-01 18 51053024 51053024 C T DCC Silent p.S1383S 0.51 TCGA-QC-A7B5-01 18 5145544 5145544 G A C18orf42 3'UTR 0.13 TCGA-QC-A7B5-01 18 55034941 55034941 G A ST8SIA3 3'UTR 0.50 TCGA-QC-A7B5-01 18 56064337 56064337 C T NEDD4L 3'Flank 0.47 TCGA-QC-A7B5-01 18 56064338 56064338 C T NEDD4L 3'Flank 0.50 TCGA-QC-A7B5-01 18 59806230 59806230 G A PIGN Missense_Mutation p.L368F 0.39 deleterious(0.01) probably_damaging(0.917) TCGA-QC-A7B5-01 18 60237413 60237413 C T ZCCHC2 Missense_Mutation p.P642S 0.53 deleterious(0.05) probably_damaging(0.998) TCGA-QC-A7B5-01 18 67727140 67727140 G A RTTN Missense_Mutation p.P1629L 0.54 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 18 6824815 6824815 C T ARHGAP28 Silent p.L32L 0.33 TCGA-QC-A7B5-01 18 72180828 72180828 C T CNDP2 Silent p.I259I 0.47 TCGA-QC-A7B5-01 18 7231470 7231470 G A LRRC30 Missense_Mutation p.E112K 0.14 deleterious(0.01) possibly_damaging(0.872) TCGA-QC-A7B5-01 18 77474693 77474693 G A CTDP1 Silent p.Q411Q 0.64 TCGA-QC-A7B5-01 18 77896525 77896525 T A ADNP2 Missense_Mutation p.S1077T 0.52 deleterious(0.01) benign(0.199) TCGA-QC-A7B5-01 18 77896527 77896527 C T ADNP2 Silent p.S1077S 0.50 TCGA-QC-A7B5-01 18 8825818 8825818 C T SOGA2 Missense_Mutation p.T1437I 0.38 deleterious(0) possibly_damaging(0.761) TCGA-QC-A7B5-01 18 8825819 8825819 C T SOGA2 Silent p.T1437T 0.38 TCGA-QC-A7B5-01 19 10088310 10088310 C T COL5A3 Missense_Mutation p.S1029N 0.38 benign(0.002) TCGA-QC-A7B5-01 19 10103504 10103504 G A COL5A3 Missense_Mutation p.P616L 0.36 unknown(0) TCGA-QC-A7B5-01 19 10103505 10103505 G A COL5A3 Missense_Mutation p.P616S 0.37 unknown(0) TCGA-QC-A7B5-01 19 10163019 10163019 G A C3P1 RNA 0.39 TCGA-QC-A7B5-01 19 1032435 1032435 G T CNN2 Missense_Mutation p.R77L 0.21 tolerated(0.2) benign(0.077) TCGA-QC-A7B5-01 19 10467269 10467269 A T TYK2 Silent p.R864R 0.21 TCGA-QC-A7B5-01 19 10577614 10577614 C T PDE4A Missense_Mutation p.L660F 0.28 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 19 10798042 10798042 G A ILF3 Missense_Mutation p.G698R 0.27 deleterious(0.01) unknown(0) TCGA-QC-A7B5-01 19 10798043 10798043 G A ILF3 Missense_Mutation p.G698E 0.28 deleterious(0.01) unknown(0) TCGA-QC-A7B5-01 19 1083180 1083180 G A HMHA1 Missense_Mutation p.G944E 0.22 deleterious(0.04) benign(0.433) TCGA-QC-A7B5-01 19 1083181 1083181 G A HMHA1 Silent p.G944G 0.22 TCGA-QC-A7B5-01 19 1086033 1086033 G A HMHA1 3'UTR 0.24 TCGA-QC-A7B5-01 19 10941745 10941745 C T DNM2 3'UTR 0.25 TCGA-QC-A7B5-01 19 11277089 11277089 G A KANK2 3'UTR 0.11 TCGA-QC-A7B5-01 19 11319661 11319661 C T DOCK6 Missense_Mutation p.A1624T 0.53 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 19 11917961 11917961 T G ZNF491 Missense_Mutation p.I398S 0.42 deleterious(0) benign(0.184) TCGA-QC-A7B5-01 19 12060728 12060728 G A ZNF700 Missense_Mutation p.R630K 0.19 tolerated(0.84) benign(0.229) TCGA-QC-A7B5-01 19 12087855 12087855 C T ZNF763 Silent p.D5D 0.19 TCGA-QC-A7B5-01 19 12186142 12186142 G A ZNF844 Silent p.E69E 0.41 TCGA-QC-A7B5-01 19 12187617 12187617 G A ZNF844 Missense_Mutation p.R561K 0.45 tolerated_low_confidence(1) benign(0.067) TCGA-QC-A7B5-01 19 12221230 12221230 G A ZNF788 Silent p.R58R 0.17 TCGA-QC-A7B5-01 19 12359283 12359283 C T ZNF44 Silent p.Q144Q 0.09 TCGA-QC-A7B5-01 19 12936605 12936605 G A RTBDN Missense_Mutation p.P234L 0.24 tolerated(0.21) unknown(0) TCGA-QC-A7B5-01 19 12946035 12946035 G A RTBDN 5'UTR 0.31 TCGA-QC-A7B5-01 19 12962986 12962986 G A MAST1 Missense_Mutation p.E312K 0.45 deleterious(0.02) probably_damaging(0.969) TCGA-QC-A7B5-01 19 13059109 13059109 C T RAD23A Missense_Mutation p.A118V 0.18 tolerated(0.21) benign(0.002) TCGA-QC-A7B5-01 19 13346467 13346467 G A CACNA1A Silent p.T1676T 0.40 TCGA-QC-A7B5-01 19 13368324 13368324 C T CACNA1A Missense_Mutation p.G1477D 0.22 probably_damaging(0.982) TCGA-QC-A7B5-01 19 1369299 1369299 C T MUM1 Silent p.G487G 0.26 TCGA-QC-A7B5-01 19 1390971 1390971 C T NDUFS7 Silent p.F110F 0.13 TCGA-QC-A7B5-01 19 14006231 14006231 G A C19orf57 Missense_Mutation p.P54S 0.23 tolerated(0.23) benign(0.002) TCGA-QC-A7B5-01 19 14876201 14876201 G A EMR2 Silent p.S279S 0.40 TCGA-QC-A7B5-01 19 15164599 15164599 C T CASP14 Missense_Mutation p.P78L 0.42 tolerated(0.11) benign(0.094) TCGA-QC-A7B5-01 19 15233758 15233758 C T ILVBL Silent p.R183R 0.47 TCGA-QC-A7B5-01 19 15276890 15276890 G A NOTCH3 Missense_Mutation p.P1792L 0.24 deleterious(0) probably_damaging(0.953) TCGA-QC-A7B5-01 19 15508397 15508397 G A AKAP8L Nonsense_Mutation p.R447* 0.43 TCGA-QC-A7B5-01 19 1555363 1555363 G A MEX3D 3'UTR 0.20 TCGA-QC-A7B5-01 19 15791085 15791085 C T CYP4F12 Silent p.I125I 0.26 TCGA-QC-A7B5-01 19 1585070 1585070 G A MBD3 Missense_Mutation p.S85F 0.23 tolerated(0.64) benign(0.282) TCGA-QC-A7B5-01 19 15918651 15918651 A G OR10H1 Missense_Mutation p.L66P 0.27 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 19 16611858 16611858 C T C19orf44 Silent p.A85A 0.44 TCGA-QC-A7B5-01 19 16612275 16612275 C T C19orf44 Silent p.S224S 0.24 TCGA-QC-A7B5-01 19 16631200 16631200 G A CHERP Missense_Mutation p.R774C 0.40 deleterious(0.02) unknown(0) TCGA-QC-A7B5-01 19 1787147 1787147 G A ATP8B3 Silent p.L1036L 0.33 TCGA-QC-A7B5-01 19 18096154 18096154 C T KCNN1 Silent p.F317F 0.28 TCGA-QC-A7B5-01 19 18257756 18257756 C T MAST3 Silent p.A1047A 0.38 TCGA-QC-A7B5-01 19 18257757 18257757 C T MAST3 Missense_Mutation p.R1048W 0.38 deleterious(0) probably_damaging(0.983) TCGA-QC-A7B5-01 19 18280638 18280638 C T PIK3R2 3'UTR 0.13 TCGA-QC-A7B5-01 19 18333087 18333087 G A PDE4C Missense_Mutation p.P97S 0.48 tolerated_low_confidence(0.44) benign(0.021) TCGA-QC-A7B5-01 19 18376638 18376638 G A KIAA1683 Missense_Mutation p.S571F 0.44 deleterious(0.02) benign(0.012) TCGA-QC-A7B5-01 19 1877605 1877605 G A ABHD17A Silent p.Y254Y 0.44 TCGA-QC-A7B5-01 19 1877606 1877606 T A ABHD17A Missense_Mutation p.Y254F 0.43 tolerated(0.14) benign(0.099) TCGA-QC-A7B5-01 19 1881390 1881390 G T ABHD17A Missense_Mutation p.S59Y 0.54 deleterious(0.01) benign(0.382) TCGA-QC-A7B5-01 19 19257570 19257570 C T MEF2B Missense_Mutation p.R219Q 0.59 deleterious(0.01) possibly_damaging(0.544) TCGA-QC-A7B5-01 19 19257880 19257880 G A MEF2B Missense_Mutation p.P169L 0.19 tolerated(0.19) benign(0.391) TCGA-QC-A7B5-01 19 19612117 19612117 G A GATAD2A Silent p.K464K 0.14 TCGA-QC-A7B5-01 19 20002339 20002339 C T ZNF253 Nonsense_Mutation p.Q95* 0.34 TCGA-QC-A7B5-01 19 20228657 20228657 G A ZNF90 Silent p.V98V 0.19 TCGA-QC-A7B5-01 19 20228946 20228946 C T ZNF90 Missense_Mutation p.H195Y 0.18 tolerated(0.15) benign(0.041) TCGA-QC-A7B5-01 19 20236176 20236176 C T CTC-260E6.2 RNA 0.19 TCGA-QC-A7B5-01 19 2110156 2110156 C T AP3D1 Silent p.G1081G 0.14 TCGA-QC-A7B5-01 19 21933954 21933954 G A ZNF100 Intron 0.52 TCGA-QC-A7B5-01 19 22156497 22156497 G A ZNF208 Missense_Mutation p.H447Y 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-QC-A7B5-01 19 22156635 22156635 C T ZNF208 Missense_Mutation p.E401K 0.55 tolerated(0.07) probably_damaging(0.99) TCGA-QC-A7B5-01 19 22941204 22941204 G A ZNF99 Missense_Mutation p.H503Y 0.22 deleterious(0.02) probably_damaging(0.99) TCGA-QC-A7B5-01 19 23329011 23329011 A T ZNF730 Missense_Mutation p.I389F 0.18 deleterious(0) possibly_damaging(0.607) TCGA-QC-A7B5-01 19 2416594 2416594 G A TMPRSS9 Missense_Mutation p.G568R 0.22 deleterious(0.01) probably_damaging(0.988) TCGA-QC-A7B5-01 19 2416595 2416595 G A TMPRSS9 Missense_Mutation p.G568E 0.22 tolerated(0.11) possibly_damaging(0.708) TCGA-QC-A7B5-01 19 3094702 3094702 C T GNA11 Missense_Mutation p.S18F 0.47 deleterious(0) benign(0.17) TCGA-QC-A7B5-01 19 3094703 3094703 C T GNA11 Silent p.S18S 0.47 TCGA-QC-A7B5-01 19 3122116 3122116 C T GNA11 3'UTR 0.21 TCGA-QC-A7B5-01 19 3282380 3282380 C T CELF5 Missense_Mutation p.T308I 0.17 tolerated(0.08) benign(0.003) TCGA-QC-A7B5-01 19 33353441 33353441 T C SLC7A9 Missense_Mutation p.Q177R 0.24 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 19 33968971 33968971 G T PEPD Missense_Mutation p.H177N 0.37 deleterious(0.05) benign(0.338) TCGA-QC-A7B5-01 19 35449413 35449413 G A ZNF792 Missense_Mutation p.P449L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 19 35843211 35843211 C T FFAR1 Silent p.L253L 0.37 TCGA-QC-A7B5-01 19 36228051 36228051 C T KMT2B Silent p.L2479L 0.12 TCGA-QC-A7B5-01 19 36317546 36317546 C T NPHS1 Missense_Mutation p.G1199E 0.15 tolerated(0.38) benign(0.05) TCGA-QC-A7B5-01 19 36501945 36501945 C T ALKBH6 Missense_Mutation p.G91R 0.19 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 19 36831859 36831859 C A ZFP14 Missense_Mutation p.G290V 0.51 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 19 36900741 36900741 G A ZFP82 5'UTR 0.42 TCGA-QC-A7B5-01 19 37039185 37039185 C T ZNF529 Missense_Mutation p.G92E 0.44 tolerated(1) benign(0.01) TCGA-QC-A7B5-01 19 37310645 37310645 T C ZNF790 Missense_Mutation p.K201E 0.44 tolerated(0.08) benign(0.005) TCGA-QC-A7B5-01 19 3778366 3778366 C T MATK Missense_Mutation p.E448K 0.25 deleterious(0) possibly_damaging(0.801) TCGA-QC-A7B5-01 19 37974812 37974812 A T ZNF570 Missense_Mutation p.L96F 0.42 tolerated(0.2) benign(0.154) TCGA-QC-A7B5-01 19 38033557 38033557 G A ZNF793 3'UTR 0.50 TCGA-QC-A7B5-01 19 38046816 38046816 C T ZNF540 Intron 0.23 TCGA-QC-A7B5-01 19 38046817 38046817 C T ZNF540 Intron 0.23 TCGA-QC-A7B5-01 19 38375718 38375718 G T WDR87 Missense_Mutation p.P2826T 0.20 unknown(0) TCGA-QC-A7B5-01 19 38378207 38378207 C T WDR87 Missense_Mutation p.R1996K 0.11 benign(0.004) TCGA-QC-A7B5-01 19 38378830 38378830 C T WDR87 Silent p.K1788K 0.21 TCGA-QC-A7B5-01 19 38379309 38379309 C T WDR87 Missense_Mutation p.E1629K 0.34 benign(0.001) TCGA-QC-A7B5-01 19 38655169 38655169 C G SIPA1L3 Missense_Mutation p.N1277K 0.48 deleterious(0.02) probably_damaging(0.937) TCGA-QC-A7B5-01 19 38682938 38682938 G A SIPA1L3 Silent p.E1528E 0.26 TCGA-QC-A7B5-01 19 38796027 38796027 G A YIF1B Missense_Mutation p.L304F 0.23 tolerated(0.66) benign(0.008) TCGA-QC-A7B5-01 19 38798125 38798125 C T YIF1B Silent p.G244G 0.38 TCGA-QC-A7B5-01 19 38937391 38937391 G A RYR1 Silent p.L261L 0.11 TCGA-QC-A7B5-01 19 38937392 38937392 G A RYR1 Missense_Mutation p.E262K 0.11 probably_damaging(0.999) TCGA-QC-A7B5-01 19 39008189 39008189 C T RYR1 Silent p.P3292P 0.52 TCGA-QC-A7B5-01 19 39008190 39008190 C T RYR1 Missense_Mutation p.P3293S 0.52 benign(0.03) TCGA-QC-A7B5-01 19 39013745 39013745 C T RYR1 Missense_Mutation p.S3446F 0.29 benign(0) TCGA-QC-A7B5-01 19 39034458 39034458 G A RYR1 Nonsense_Mutation p.W3985* 0.25 TCGA-QC-A7B5-01 19 39034459 39034459 G A RYR1 Missense_Mutation p.D3986N 0.24 benign(0.004) TCGA-QC-A7B5-01 19 39214831 39214831 C T ACTN4 Missense_Mutation p.T576I 0.37 tolerated(0.06) probably_damaging(0.926) TCGA-QC-A7B5-01 19 39221174 39221174 C T CAPN12 3'Flank 0.46 TCGA-QC-A7B5-01 19 3924695 3924695 C T ATCAY 3'UTR 0.31 TCGA-QC-A7B5-01 19 39860580 39860580 G A SAMD4B Missense_Mutation p.R161Q 0.39 tolerated(0.31) benign(0.018) TCGA-QC-A7B5-01 19 39860581 39860581 G A SAMD4B Silent p.R161R 0.41 TCGA-QC-A7B5-01 19 39880307 39880307 G A PAF1 Missense_Mutation p.P89S 0.21 deleterious(0.01) probably_damaging(0.959) TCGA-QC-A7B5-01 19 40711137 40711137 C T MAP3K10 Silent p.H374H 0.22 TCGA-QC-A7B5-01 19 41063225 41063225 C T SPTBN4 Silent p.T1862T 0.57 TCGA-QC-A7B5-01 19 41119327 41119327 G A LTBP4 Missense_Mutation p.E884K 0.49 tolerated(0.05) probably_damaging(0.978) TCGA-QC-A7B5-01 19 41133182 41133182 C T LTBP4 Missense_Mutation p.R1496C 0.30 deleterious(0.03) possibly_damaging(0.711) TCGA-QC-A7B5-01 19 41292580 41292580 C T RAB4B Silent p.F147F 0.20 TCGA-QC-A7B5-01 19 41626324 41626324 G A CYP2F1 Missense_Mutation p.G136E 0.18 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 19 41765783 41765783 G A AXL Missense_Mutation p.A887T 0.20 tolerated(0.38) benign(0.001) TCGA-QC-A7B5-01 19 41854266 41854266 G A TGFB1 Silent p.L150L 0.27 TCGA-QC-A7B5-01 19 42218937 42218937 G A CEACAM5 Missense_Mutation p.E158K 0.15 deleterious(0.02) probably_damaging(0.985) TCGA-QC-A7B5-01 19 42342051 42342051 C T LYPD4 Missense_Mutation p.A166T 0.19 tolerated(0.32) benign(0.007) TCGA-QC-A7B5-01 19 42396237 42396237 G A ARHGEF1 Intron 0.32 TCGA-QC-A7B5-01 19 42396238 42396238 G A ARHGEF1 Intron 0.35 TCGA-QC-A7B5-01 19 42482804 42482804 G A ATP1A3 Silent p.F541F 0.47 TCGA-QC-A7B5-01 19 42566691 42566691 G A GRIK5 Missense_Mutation p.L153F 0.32 deleterious(0.01) probably_damaging(1) TCGA-QC-A7B5-01 19 42566692 42566692 G A GRIK5 Silent p.I152I 0.33 TCGA-QC-A7B5-01 19 42794778 42794778 C T CIC Missense_Mutation p.P620S 0.38 probably_damaging(0.968) TCGA-QC-A7B5-01 19 42798195 42798195 C T CIC Silent p.P1383P 0.37 TCGA-QC-A7B5-01 19 42799426 42799426 C T CIC 3'UTR 0.50 TCGA-QC-A7B5-01 19 4292720 4292720 G A TMIGD2 Missense_Mutation p.P242L 0.21 tolerated(0.21) unknown(0) TCGA-QC-A7B5-01 19 43226221 43226221 G A PSG3 3'UTR 0.48 TCGA-QC-A7B5-01 19 43376179 43376179 G A PSG1 Missense_Mutation p.S150F 0.50 tolerated(0.32) benign(0.42) TCGA-QC-A7B5-01 19 43982237 43982237 C T PHLDB3 Missense_Mutation p.E584K 0.34 deleterious(0) probably_damaging(0.931) TCGA-QC-A7B5-01 19 44116755 44116755 C T SRRM5 Missense_Mutation p.P161L 0.43 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 19 44131056 44131056 G A CADM4 Missense_Mutation p.P127S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-QC-A7B5-01 19 44501414 44501414 T A ZNF155 Missense_Mutation p.S480T 0.13 deleterious(0) possibly_damaging(0.82) TCGA-QC-A7B5-01 19 44512953 44512953 C T ZNF230 Silent p.T9T 0.24 TCGA-QC-A7B5-01 19 44660468 44660468 G A ZNF234 Nonsense_Mutation p.W100* 0.14 TCGA-QC-A7B5-01 19 44660469 44660469 G A ZNF234 Nonsense_Mutation p.W100* 0.14 TCGA-QC-A7B5-01 19 44777825 44777825 G A ZNF233 Missense_Mutation p.G338R 0.18 deleterious(0.05) probably_damaging(0.988) TCGA-QC-A7B5-01 19 44778226 44778226 G A ZNF233 Silent p.Q471Q 0.18 TCGA-QC-A7B5-01 19 45016987 45016991 GTCCT TTCC CEACAM20 RNA 0.34 TCGA-QC-A7B5-01 19 4510569 4510569 C T PLIN4 Missense_Mutation p.G1121R 0.40 tolerated(0.06) benign(0.007) TCGA-QC-A7B5-01 19 45211202 45211202 C T CEACAM16 Missense_Mutation p.T337I 0.39 tolerated(0.18) probably_damaging(0.957) TCGA-QC-A7B5-01 19 45213859 45213859 C T CEACAM16 3'UTR 0.22 TCGA-QC-A7B5-01 19 45683730 45683730 T G BLOC1S3 3'UTR 0.38 TCGA-QC-A7B5-01 19 45899667 45899667 G A PPP1R13L Missense_Mutation p.P247L 0.14 tolerated(0.08) benign(0.025) TCGA-QC-A7B5-01 19 45899668 45899668 G A PPP1R13L Missense_Mutation p.P247S 0.14 deleterious(0.01) possibly_damaging(0.545) TCGA-QC-A7B5-01 19 46216114 46216114 C T FBXO46 Missense_Mutation p.G214R 0.22 tolerated(0.33) probably_damaging(0.964) TCGA-QC-A7B5-01 19 46216306 46216306 G A FBXO46 Missense_Mutation p.R150W 0.22 deleterious(0.02) benign(0.057) TCGA-QC-A7B5-01 19 46286583 46286583 G A DMWD 3'UTR 0.55 TCGA-QC-A7B5-01 19 46832653 46832653 G A HIF3A Missense_Mutation p.G544R 0.22 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 19 46879824 46879824 C T PPP5C Missense_Mutation p.A209V 0.26 tolerated(0.53) benign(0.173) TCGA-QC-A7B5-01 19 46879825 46879825 C T PPP5C Silent p.A209A 0.25 TCGA-QC-A7B5-01 19 46916530 46916530 C T CCDC8 5'UTR 0.43 TCGA-QC-A7B5-01 19 47231154 47231154 C T STRN4 Missense_Mutation p.E384K 0.20 tolerated(0.06) benign(0.229) TCGA-QC-A7B5-01 19 47424047 47424047 G A ARHGAP35 Silent p.K705K 0.44 TCGA-QC-A7B5-01 19 4793914 4793914 C T FEM1A 3'UTR 0.22 TCGA-QC-A7B5-01 19 47999982 47999982 G A NAPA Intron 0.21 TCGA-QC-A7B5-01 19 47999983 47999983 G A NAPA Intron 0.20 TCGA-QC-A7B5-01 19 48048923 48048923 G A ZNF541 Missense_Mutation p.P288L 0.25 deleterious(0) probably_damaging(0.911) TCGA-QC-A7B5-01 19 48048924 48048924 G A ZNF541 Missense_Mutation p.P288S 0.26 deleterious(0.02) possibly_damaging(0.871) TCGA-QC-A7B5-01 19 48197742 48197742 C T GLTSCR1 Missense_Mutation p.S885F 0.28 unknown(0) TCGA-QC-A7B5-01 19 48495263 48495263 T A BSPH1 Intron 0.41 TCGA-QC-A7B5-01 19 48547266 48547266 C A CABP5 5'UTR 0.43 TCGA-QC-A7B5-01 19 48949254 48949254 G A GRWD1 5'UTR 0.16 TCGA-QC-A7B5-01 19 48949255 48949255 G A GRWD1 5'UTR 0.16 TCGA-QC-A7B5-01 19 49013395 49013395 C T LMTK3 Silent p.G111G 0.23 TCGA-QC-A7B5-01 19 49013396 49013396 C T LMTK3 Missense_Mutation p.G111E 0.23 probably_damaging(0.92) TCGA-QC-A7B5-01 19 49376799 49376799 C T PPP1R15A Silent p.S103S 0.51 TCGA-QC-A7B5-01 19 49442736 49442736 G A DHDH Missense_Mutation p.E133K 0.26 tolerated(0.35) benign(0.059) TCGA-QC-A7B5-01 19 49469164 49469164 G A FTL Silent p.Q80Q 0.15 TCGA-QC-A7B5-01 19 49469165 49469165 G A FTL Missense_Mutation p.D81N 0.15 deleterious(0.05) benign(0.112) TCGA-QC-A7B5-01 19 49548426 49548426 G A CGB5 Missense_Mutation p.D125N 0.19 tolerated(0.57) benign(0.016) TCGA-QC-A7B5-01 19 49649428 49649428 C T PPFIA3 Silent p.T938T 0.15 TCGA-QC-A7B5-01 19 49674906 49674906 C T TRPM4 Silent p.C310C 0.41 TCGA-QC-A7B5-01 19 49674907 49674907 C T TRPM4 Silent p.L311L 0.42 TCGA-QC-A7B5-01 19 49912522 49912522 G A CCDC155 Silent p.E376E 0.19 TCGA-QC-A7B5-01 19 49990734 49990734 C T RPL13A 5'Flank 0.44 TCGA-QC-A7B5-01 19 50028814 50028814 G A FCGRT Missense_Mutation p.M324I 0.29 tolerated(0.09) benign(0.004) TCGA-QC-A7B5-01 19 50169104 50169104 C T BCL2L12 Silent p.F8F 0.35 TCGA-QC-A7B5-01 19 50251659 50251659 C A TSKS Missense_Mutation p.R156L 0.22 deleterious(0.02) probably_damaging(0.997) TCGA-QC-A7B5-01 19 50310232 50310232 C T FUZ 3'UTR 0.21 TCGA-QC-A7B5-01 19 50310233 50310233 C T FUZ 3'UTR 0.21 TCGA-QC-A7B5-01 19 50379908 50379908 G A AKT1S1 Missense_Mutation p.S2F 0.33 deleterious_low_confidence(0.01) benign(0.042) TCGA-QC-A7B5-01 19 50735284 50735284 G A MYH14 Silent p.L357L 0.18 TCGA-QC-A7B5-01 19 50735285 50735285 G A MYH14 Missense_Mutation p.E358K 0.18 tolerated(0.2) benign(0.272) TCGA-QC-A7B5-01 19 5077412 5077412 C T KDM4B Silent p.A237A 0.23 TCGA-QC-A7B5-01 19 50865243 50865243 A T NAPSA Missense_Mutation p.F111Y 0.17 tolerated(0.19) benign(0.134) TCGA-QC-A7B5-01 19 50912129 50912129 C T POLD1 Silent p.L621L 0.19 TCGA-QC-A7B5-01 19 50947029 50947029 G A MYBPC2 Silent p.V363V 0.17 TCGA-QC-A7B5-01 19 51009439 51009439 C T JOSD2 Silent p.R186R 0.41 TCGA-QC-A7B5-01 19 51274790 51274790 C T GPR32 Silent p.L311L 0.17 TCGA-QC-A7B5-01 19 5133995 5133995 G A KDM4B Missense_Mutation p.E670K 0.35 possibly_damaging(0.651) TCGA-QC-A7B5-01 19 5144825 5144825 C T KDM4B Missense_Mutation p.S978F 0.13 benign(0.002) TCGA-QC-A7B5-01 19 51647685 51647685 C T SIGLEC7 Silent p.I152I 0.16 TCGA-QC-A7B5-01 19 51647686 51647686 C T SIGLEC7 Missense_Mutation p.L153F 0.16 tolerated(0.14) benign(0.307) TCGA-QC-A7B5-01 19 51986563 51986563 C T CEACAM18 Silent p.S383S 0.36 TCGA-QC-A7B5-01 19 52002723 52002723 G A SIGLEC12 Silent p.T352T 0.29 TCGA-QC-A7B5-01 19 52002724 52002724 G A SIGLEC12 Missense_Mutation p.T352I 0.25 deleterious(0.04) possibly_damaging(0.894) TCGA-QC-A7B5-01 19 52146601 52146601 G A SIGLEC14 3'UTR 0.50 TCGA-QC-A7B5-01 19 52659026 52659026 G A ZNF836 Missense_Mutation p.P637L 0.18 tolerated(0.05) probably_damaging(0.998) TCGA-QC-A7B5-01 19 52942154 52942154 C T ZNF534 Missense_Mutation p.L494F 0.20 deleterious(0.02) probably_damaging(0.991) TCGA-QC-A7B5-01 19 53270681 53270681 G T ZNF600 Missense_Mutation p.Q110K 0.39 deleterious(0.04) probably_damaging(0.93) TCGA-QC-A7B5-01 19 53644726 53644726 G A ZNF347 Missense_Mutation p.T453I 0.21 deleterious(0.04) possibly_damaging(0.744) TCGA-QC-A7B5-01 19 53770570 53770570 C T VN1R4 Missense_Mutation p.A117T 0.26 tolerated(0.07) benign(0.233) TCGA-QC-A7B5-01 19 53794799 53794799 T C BIRC8 5'UTR 0.15 TCGA-QC-A7B5-01 19 53844556 53844556 C T ZNF845 5'UTR 0.12 TCGA-QC-A7B5-01 19 54103593 54103593 G A CTB-167G5.5 Missense_Mutation p.P137S 0.18 tolerated(0.18) benign(0.325) TCGA-QC-A7B5-01 19 5456454 5456454 G A ZNRF4 Missense_Mutation p.E318K 0.56 deleterious(0.03) possibly_damaging(0.869) TCGA-QC-A7B5-01 19 54760617 54760617 G A LILRB5 Silent p.T30T 0.21 TCGA-QC-A7B5-01 19 54783672 54783672 C A LILRB2 Missense_Mutation p.S110I 0.32 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 19 54783794 54783794 C T LILRB2 Nonsense_Mutation p.W69* 0.13 TCGA-QC-A7B5-01 19 55179409 55179409 C T LILRB4 Missense_Mutation p.P429L 0.13 tolerated(0.29) possibly_damaging(0.878) TCGA-QC-A7B5-01 19 55221394 55221394 G A AC098784.2 3'Flank 0.37 TCGA-QC-A7B5-01 19 55333017 55333017 C T KIR3DL1 Intron 0.38 TCGA-QC-A7B5-01 19 55385770 55385770 C T FCAR Silent p.L9L 0.13 TCGA-QC-A7B5-01 19 55450638 55450638 G A NLRP7 Nonsense_Mutation p.Q517* 0.31 TCGA-QC-A7B5-01 19 55450872 55450872 C T NLRP7 Missense_Mutation p.G439R 0.32 tolerated(0.14) benign(0.394) TCGA-QC-A7B5-01 19 55605723 55605723 C T PPP1R12C Missense_Mutation p.R558K 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-QC-A7B5-01 19 55817697 55817697 C T BRSK1 Silent p.V656V 0.49 TCGA-QC-A7B5-01 19 55869808 55869808 C T FAM71E2 Missense_Mutation p.E810K 0.21 tolerated(0.78) benign(0.007) TCGA-QC-A7B5-01 19 55898033 55898033 T G RPL28 Silent p.G59G 0.29 TCGA-QC-A7B5-01 19 56164123 56164123 C T CCDC106 3'UTR 0.62 TCGA-QC-A7B5-01 19 56164124 56164124 C T CCDC106 3'UTR 0.62 TCGA-QC-A7B5-01 19 56320365 56320365 T A NLRP11 Missense_Mutation p.E537D 0.37 tolerated(0.09) benign(0.026) TCGA-QC-A7B5-01 19 56392906 56392906 C T NLRP4 Silent p.L980L 0.16 TCGA-QC-A7B5-01 19 56443432 56443432 C T NLRP13 Nonsense_Mutation p.W82* 0.18 TCGA-QC-A7B5-01 19 56467043 56467043 G C NLRP8 Missense_Mutation p.R540P 0.14 tolerated(0.21) possibly_damaging(0.521) TCGA-QC-A7B5-01 19 57035875 57035875 A T ZNF471 Missense_Mutation p.I147F 0.21 tolerated(0.32) benign(0.014) TCGA-QC-A7B5-01 19 57036469 57036469 C T ZNF471 Missense_Mutation p.P345S 0.43 deleterious(0) probably_damaging(0.997) TCGA-QC-A7B5-01 19 57133647 57133647 G A ZNF71 Missense_Mutation p.C331Y 0.20 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 19 57135366 57135366 C G ZNF71 3'UTR 0.46 TCGA-QC-A7B5-01 19 57135367 57135367 C T ZNF71 3'UTR 0.46 TCGA-QC-A7B5-01 19 57326065 57326065 C T PEG3 Missense_Mutation p.E1249K 0.27 tolerated(0.61) benign(0.119) TCGA-QC-A7B5-01 19 57326183 57326183 C T PEG3 Silent p.R1209R 0.22 TCGA-QC-A7B5-01 19 57335673 57335673 G T PEG3 Silent p.L117L 0.25 TCGA-QC-A7B5-01 19 5733903 5733903 G A CATSPERD Missense_Mutation p.G105S 0.33 tolerated(0.16) possibly_damaging(0.824) TCGA-QC-A7B5-01 19 57876603 57876603 G A TRAPPC2P1 Silent p.G134G 0.52 TCGA-QC-A7B5-01 19 57932771 57932771 T G ZNF17 Silent p.P637P 0.32 TCGA-QC-A7B5-01 19 57967362 57967362 G A VN1R1 Missense_Mutation p.P165S 0.42 tolerated(0.33) benign(0.206) TCGA-QC-A7B5-01 19 58046563 58046563 G A ZNF549 Missense_Mutation p.G42S 0.33 tolerated(0.68) benign(0.314) TCGA-QC-A7B5-01 19 58198800 58198800 C T ZNF551 Missense_Mutation p.S386F 0.51 deleterious(0) possibly_damaging(0.77) TCGA-QC-A7B5-01 19 58232718 58232718 C A ZNF671 Missense_Mutation p.G246C 0.22 tolerated(0.14) benign(0.002) TCGA-QC-A7B5-01 19 5941824 5941824 G A RANBP3 Missense_Mutation p.P102L 0.20 deleterious_low_confidence(0) benign(0.424) TCGA-QC-A7B5-01 19 6151750 6151750 C T ACSBG2 Silent p.I110I 0.27 TCGA-QC-A7B5-01 19 621793 621793 C T POLRMT Silent p.A635A 0.32 TCGA-QC-A7B5-01 19 6422352 6422352 T C KHSRP Silent p.G115G 0.52 TCGA-QC-A7B5-01 19 6433609 6433609 G A SLC25A41 Silent p.P32P 0.51 TCGA-QC-A7B5-01 19 6693028 6693028 G A C3 Silent p.V1099V 0.35 TCGA-QC-A7B5-01 19 6697788 6697788 G A C3 Missense_Mutation p.P820S 0.17 tolerated(0.05) probably_damaging(0.985) TCGA-QC-A7B5-01 19 6850689 6850689 T G VAV1 Missense_Mutation p.V713G 0.35 tolerated(0.23) benign(0.03) TCGA-QC-A7B5-01 19 7712062 7712062 C T STXBP2 Silent p.D489D 0.45 TCGA-QC-A7B5-01 19 7764668 7764668 C T FCER2 5'UTR 0.22 TCGA-QC-A7B5-01 19 8006055 8006055 G A TIMM44 Missense_Mutation p.L25F 0.27 tolerated_low_confidence(0.18) benign(0.003) TCGA-QC-A7B5-01 19 8160858 8160858 C T FBN3 Silent p.G1882G 0.23 TCGA-QC-A7B5-01 19 8564148 8564148 C T PRAM1 Missense_Mutation p.E182K 0.46 deleterious(0.01) possibly_damaging(0.703) TCGA-QC-A7B5-01 19 8586453 8586453 G A MYO1F Nonsense_Mutation p.Q1086* 0.24 TCGA-QC-A7B5-01 19 8601415 8601415 G A MYO1F Silent p.A622A 0.41 TCGA-QC-A7B5-01 19 872078 872078 C T MED16 Missense_Mutation p.G649D 0.30 tolerated(0.2) probably_damaging(0.982) TCGA-QC-A7B5-01 19 872079 872079 C T MED16 Missense_Mutation p.G649S 0.31 tolerated(0.38) probably_damaging(0.961) TCGA-QC-A7B5-01 19 8842041 8842041 C T OR2Z1 Silent p.S217S 0.26 TCGA-QC-A7B5-01 19 8993011 8993011 G A MUC16 Silent p.T13916T 0.10 TCGA-QC-A7B5-01 19 9005225 9005225 G A MUC16 Silent p.F13284F 0.19 TCGA-QC-A7B5-01 19 9060452 9060452 G A MUC16 Silent p.S8998S 0.31 TCGA-QC-A7B5-01 19 9061119 9061119 G A MUC16 Missense_Mutation p.P8776L 0.16 unknown(0) TCGA-QC-A7B5-01 19 9063581 9063581 C A MUC16 Missense_Mutation p.E7955D 0.35 unknown(0) TCGA-QC-A7B5-01 19 9068865 9068865 G A MUC16 Missense_Mutation p.S6194L 0.43 unknown(0) TCGA-QC-A7B5-01 19 9070715 9070715 C T MUC16 Silent p.Q5577Q 0.49 TCGA-QC-A7B5-01 19 9072715 9072715 C T MUC16 Missense_Mutation p.E4911K 0.40 unknown(0) TCGA-QC-A7B5-01 19 9076121 9076121 C T MUC16 Silent p.Q3775Q 0.17 TCGA-QC-A7B5-01 1 101196794 101196794 C T VCAM1 Silent p.L415L 0.32 TCGA-QC-A7B5-01 1 103342372 103342372 C T COL11A1 3'UTR 0.28 TCGA-QC-A7B5-01 1 10719870 10719870 G A CASZ1 Missense_Mutation p.P410L 0.10 deleterious_low_confidence(0) benign(0.204) TCGA-QC-A7B5-01 1 107600229 107600229 G A PRMT6 Missense_Mutation p.G298R 0.28 deleterious(0.01) benign(0.007) TCGA-QC-A7B5-01 1 107600741 107600741 A T PRMT6 3'UTR 0.31 TCGA-QC-A7B5-01 1 108677919 108677919 G A SLC25A24 3'UTR 0.39 TCGA-QC-A7B5-01 1 108926209 108926209 T G NBPF6 Intron 0.09 TCGA-QC-A7B5-01 1 109261501 109261501 C T FNDC7 Missense_Mutation p.S143F 0.12 deleterious(0.02) benign(0.33) TCGA-QC-A7B5-01 1 110032568 110032568 G A ATXN7L2 Missense_Mutation p.E352K 0.55 tolerated(0.21) possibly_damaging(0.581) TCGA-QC-A7B5-01 1 110163499 110163499 C T AMPD2 5'UTR 0.16 TCGA-QC-A7B5-01 1 110306520 110306520 G A EPS8L3 5'UTR 0.16 TCGA-QC-A7B5-01 1 110709708 110709708 G A SLC6A17 Missense_Mutation p.E53K 0.24 tolerated(0.25) benign(0.046) TCGA-QC-A7B5-01 1 110918101 110918101 G A SLC16A4 Missense_Mutation p.L439F 0.20 tolerated(0.07) probably_damaging(0.991) TCGA-QC-A7B5-01 1 1111580 1111580 G A TTLL10 Intron 0.25 TCGA-QC-A7B5-01 1 111778738 111778738 G A CHI3L2 Missense_Mutation p.G233E 0.37 deleterious(0.02) probably_damaging(1) TCGA-QC-A7B5-01 1 112045802 112045802 T C ADORA3 Missense_Mutation p.I59V 0.29 tolerated_low_confidence(0.1) benign(0.107) TCGA-QC-A7B5-01 1 112304731 112304731 T A DDX20 Intron 0.67 TCGA-QC-A7B5-01 1 112533638 112533638 G A KCND3 5'Flank 0.38 TCGA-QC-A7B5-01 1 113254635 113254635 C T PPM1J Silent p.R295R 0.31 TCGA-QC-A7B5-01 1 11345888 11345888 C T UBIAD1 Silent p.S239S 0.31 TCGA-QC-A7B5-01 1 113637279 113637279 C T LRIG2 Silent p.F235F 0.17 TCGA-QC-A7B5-01 1 114449769 114449769 C T DCLRE1B Missense_Mutation p.T114I 0.18 deleterious(0.01) possibly_damaging(0.457) TCGA-QC-A7B5-01 1 114449770 114449770 C T DCLRE1B Silent p.T114T 0.18 TCGA-QC-A7B5-01 1 114483816 114483816 T C HIPK1 Silent p.L271L 0.53 TCGA-QC-A7B5-01 1 114523969 114523969 G A OLFML3 Missense_Mutation p.G267S 0.38 tolerated(0.71) benign(0.298) TCGA-QC-A7B5-01 1 114523970 114523970 G A OLFML3 Missense_Mutation p.G267D 0.36 tolerated(0.09) possibly_damaging(0.778) TCGA-QC-A7B5-01 1 115218600 115218600 G C AMPD1 Missense_Mutation p.F504L 0.16 tolerated(1) benign(0.364) TCGA-QC-A7B5-01 1 115316556 115316556 A C SIKE1 3'UTR 0.50 TCGA-QC-A7B5-01 1 116379898 116379898 G A NHLH2 3'UTR 0.28 TCGA-QC-A7B5-01 1 117484465 117484465 T C PTGFRN Missense_Mutation p.F60L 0.37 tolerated(0.29) probably_damaging(0.996) TCGA-QC-A7B5-01 1 117556218 117556218 A T CD101 Missense_Mutation p.R344S 0.15 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 1 11879575 11879575 C A CLCN6 Missense_Mutation p.L104I 0.30 tolerated(0.28) benign(0.423) TCGA-QC-A7B5-01 1 119426001 119426001 G A TBX15 3'UTR 0.29 TCGA-QC-A7B5-01 1 119427303 119427303 G A TBX15 3'UTR 0.22 TCGA-QC-A7B5-01 1 120050144 120050144 G A HSD3B1 Silent p.L15L 0.20 TCGA-QC-A7B5-01 1 120510232 120510232 G A NOTCH2 Missense_Mutation p.P426L 0.37 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 12186066 12186066 C T TNFRSF8 Silent p.F404F 0.23 TCGA-QC-A7B5-01 1 1222294 1222294 G A SCNN1D Missense_Mutation p.R353Q 0.22 tolerated(0.13) benign(0.007) TCGA-QC-A7B5-01 1 1227399 1227399 G A SCNN1D 3'UTR 0.43 TCGA-QC-A7B5-01 1 12726407 12726407 G A AADACL4 Silent p.K295K 0.30 TCGA-QC-A7B5-01 1 1275689 1275689 G A DVL1 Missense_Mutation p.S236F 0.40 deleterious(0) probably_damaging(0.919) TCGA-QC-A7B5-01 1 12919636 12919636 C T PRAMEF2 Missense_Mutation p.P126S 0.33 tolerated(0.39) benign(0.283) TCGA-QC-A7B5-01 1 12954572 12954572 G A PRAMEF10 Silent p.L237L 0.15 TCGA-QC-A7B5-01 1 14108398 14108398 C T PRDM2 Missense_Mutation p.P1370S 0.42 unknown(0) TCGA-QC-A7B5-01 1 1412669 1412669 C T ATAD3B Missense_Mutation p.A74V 0.39 deleterious(0.03) probably_damaging(0.986) TCGA-QC-A7B5-01 1 142803900 142803900 T G RP11-423O2.5 RNA 0.16 TCGA-QC-A7B5-01 1 144814782 144814782 C T NBPF9 Silent p.L139L 0.20 TCGA-QC-A7B5-01 1 144882558 144882558 A G PDE4DIP Missense_Mutation p.V1154A 0.14 tolerated(0.89) benign(0.014) TCGA-QC-A7B5-01 1 144931147 144931147 G A PDE4DIP Intron 0.19 TCGA-QC-A7B5-01 1 145367753 145367753 G A NBPF10 Missense_Mutation p.R3450K 0.16 probably_damaging(0.949) TCGA-QC-A7B5-01 1 145561829 145561829 A C ANKRD35 Missense_Mutation p.K506T 0.32 deleterious(0) benign(0.403) TCGA-QC-A7B5-01 1 146736135 146736135 C T CHD1L Nonsense_Mutation p.Q211* 0.38 TCGA-QC-A7B5-01 1 147230586 147230586 G A GJA5 Missense_Mutation p.S254F 0.47 deleterious(0.02) benign(0.142) TCGA-QC-A7B5-01 1 147416171 147416171 G A GPR89B Nonsense_Mutation p.W125* 0.38 TCGA-QC-A7B5-01 1 149755507 149755507 C T FCGR1A Intron 0.50 TCGA-QC-A7B5-01 1 149857650 149857650 C T HIST2H2BE 3'UTR 0.32 TCGA-QC-A7B5-01 1 150280620 150280620 C A MRPS21 Missense_Mutation p.F74L 0.61 possibly_damaging(0.697) TCGA-QC-A7B5-01 1 151779524 151779524 G A RORC 3'UTR 0.10 TCGA-QC-A7B5-01 1 151780029 151780029 G A RORC Silent p.I492I 0.15 TCGA-QC-A7B5-01 1 152058558 152058558 C T TCHHL1 Missense_Mutation p.D534N 0.35 deleterious(0.04) possibly_damaging(0.776) TCGA-QC-A7B5-01 1 152058561 152058561 C T TCHHL1 Missense_Mutation p.E533K 0.33 tolerated(0.14) benign(0.105) TCGA-QC-A7B5-01 1 152185643 152185643 C T HRNR Missense_Mutation p.G2821E 0.18 unknown(0) TCGA-QC-A7B5-01 1 152275690 152275690 G A FLG Missense_Mutation p.S3891F 0.25 unknown(0) TCGA-QC-A7B5-01 1 152325695 152325695 C T FLG2 Missense_Mutation p.G1523S 0.29 possibly_damaging(0.483) TCGA-QC-A7B5-01 1 152770602 152770602 G A LCE1D Missense_Mutation p.G111E 0.09 unknown(0) TCGA-QC-A7B5-01 1 153042991 153042991 C T SPRR2B 3'UTR 0.20 TCGA-QC-A7B5-01 1 153279583 153279583 G A PGLYRP3 Silent p.S72S 0.21 TCGA-QC-A7B5-01 1 153614779 153614779 G A CHTOP Missense_Mutation p.G93R 0.33 deleterious(0) unknown(0) TCGA-QC-A7B5-01 1 153925794 153925794 C T CRTC2 Silent p.Q185Q 0.42 TCGA-QC-A7B5-01 1 153931645 153931645 G A SLC39A1 3'UTR 0.38 TCGA-QC-A7B5-01 1 154193369 154193369 G A UBAP2L 5'UTR 0.14 TCGA-QC-A7B5-01 1 154315646 154315646 G A ATP8B2 Missense_Mutation p.R537K 0.35 deleterious(0.02) probably_damaging(0.984) TCGA-QC-A7B5-01 1 154315647 154315647 G A ATP8B2 Silent p.R537R 0.35 TCGA-QC-A7B5-01 1 154918538 154918538 G A PBXIP1 Missense_Mutation p.P538S 0.36 tolerated(0.31) benign(0.006) TCGA-QC-A7B5-01 1 154932276 154932276 G A PYGO2 Missense_Mutation p.P67L 0.37 deleterious(0) probably_damaging(0.963) TCGA-QC-A7B5-01 1 154966128 154966128 C T LENEP Silent p.F15F 0.44 TCGA-QC-A7B5-01 1 154966129 154966129 C T LENEP Missense_Mutation p.L16F 0.45 tolerated_low_confidence(0.34) benign(0) TCGA-QC-A7B5-01 1 155002676 155002676 T C DCST2 Missense_Mutation p.Y354C 0.34 deleterious(0) possibly_damaging(0.799) TCGA-QC-A7B5-01 1 155226052 155226052 C T SCAMP3 3'UTR 0.11 TCGA-QC-A7B5-01 1 155226053 155226053 C T SCAMP3 3'UTR 0.09 TCGA-QC-A7B5-01 1 155736173 155736173 G A GON4L Missense_Mutation p.P1031S 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-QC-A7B5-01 1 155874290 155874290 C T RIT1 Missense_Mutation p.E98K 0.42 deleterious(0) probably_damaging(0.986) TCGA-QC-A7B5-01 1 155874291 155874291 T A RIT1 Silent p.A97A 0.42 TCGA-QC-A7B5-01 1 155891652 155891652 C T KIAA0907 Missense_Mutation p.G338S 0.48 deleterious(0.03) probably_damaging(0.978) TCGA-QC-A7B5-01 1 156042435 156042435 C T MEX3A 3'UTR 0.49 TCGA-QC-A7B5-01 1 156354773 156354773 G A RHBG 3'UTR 0.31 TCGA-QC-A7B5-01 1 156436206 156436206 G A MEF2D 3'UTR 0.16 TCGA-QC-A7B5-01 1 156639422 156639422 G A NES Missense_Mutation p.P1520S 0.14 tolerated(0.59) benign(0.09) TCGA-QC-A7B5-01 1 156641983 156641983 G A NES Missense_Mutation p.S666L 0.26 deleterious(0.02) possibly_damaging(0.504) TCGA-QC-A7B5-01 1 156714910 156714910 G A HDGF Missense_Mutation p.P81S 0.28 deleterious(0) probably_damaging(0.974) TCGA-QC-A7B5-01 1 156878611 156878611 C A PEAR1 Missense_Mutation p.P427Q 0.10 deleterious(0.01) possibly_damaging(0.519) TCGA-QC-A7B5-01 1 157504547 157504547 G A FCRL5 Missense_Mutation p.P513L 0.21 tolerated(0.89) benign(0.004) TCGA-QC-A7B5-01 1 157648536 157648536 C T FCRL3 Silent p.E723E 0.11 TCGA-QC-A7B5-01 1 157665235 157665235 C T FCRL3 Missense_Mutation p.G432E 0.25 deleterious(0.03) probably_damaging(0.998) TCGA-QC-A7B5-01 1 157718702 157718702 G A FCRL2 Silent p.T452T 0.14 TCGA-QC-A7B5-01 1 157773815 157773815 C T FCRL1 Missense_Mutation p.D47N 0.47 tolerated(0.37) benign(0.013) TCGA-QC-A7B5-01 1 15812515 15812515 G A CELA2B Missense_Mutation p.G205S 0.34 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 1 158226673 158226673 G A CD1A Nonsense_Mutation p.W234* 0.18 TCGA-QC-A7B5-01 1 158227513 158227513 C T CD1A 3'UTR 0.19 TCGA-QC-A7B5-01 1 158325195 158325195 C T CD1E Missense_Mutation p.S154F 0.40 deleterious(0) possibly_damaging(0.743) TCGA-QC-A7B5-01 1 158517681 158517681 G A OR6Y1 Missense_Mutation p.S72F 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 1 159283599 159283599 G A OR10J3 Missense_Mutation p.P284L 0.48 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 1 159284008 159284008 C T OR10J3 Missense_Mutation p.G148R 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-QC-A7B5-01 1 159683514 159683514 G A CRP Missense_Mutation p.S159F 0.32 deleterious(0) probably_damaging(0.993) TCGA-QC-A7B5-01 1 16057088 16057088 C T PLEKHM2 Missense_Mutation p.S757F 0.26 tolerated(0.11) benign(0.002) TCGA-QC-A7B5-01 1 16057089 16057089 C T PLEKHM2 Silent p.S757S 0.25 TCGA-QC-A7B5-01 1 160580002 160580002 A G SLAMF1 3'UTR 0.39 TCGA-QC-A7B5-01 1 160771749 160771749 C T LY9 Intron 0.48 TCGA-QC-A7B5-01 1 161018938 161018938 G A ARHGAP30 Missense_Mutation p.P625S 0.43 tolerated_low_confidence(0.4) benign(0.003) TCGA-QC-A7B5-01 1 161087837 161087837 C T PFDN2 5'UTR 0.41 TCGA-QC-A7B5-01 1 161487995 161487995 G A FCGR2A 3'UTR 0.14 TCGA-QC-A7B5-01 1 16199525 16199525 C T SPEN Missense_Mutation p.R100C 0.33 probably_damaging(0.997) TCGA-QC-A7B5-01 1 162354813 162354813 G A C1orf226 3'Flank 0.22 TCGA-QC-A7B5-01 1 16261246 16261246 C T SPEN Silent p.I2837I 0.42 TCGA-QC-A7B5-01 1 165182896 165182896 G A LMX1A Silent p.S217S 0.29 TCGA-QC-A7B5-01 1 16578032 16578032 G A FBXO42 Silent p.S429S 0.26 TCGA-QC-A7B5-01 1 16580201 16580201 G A FBXO42 Missense_Mutation p.L265F 0.32 deleterious(0.04) benign(0.372) TCGA-QC-A7B5-01 1 166039880 166039880 G A FAM78B Silent p.T128T 0.15 TCGA-QC-A7B5-01 1 166591242 166591242 C T FMO9P RNA 0.44 TCGA-QC-A7B5-01 1 166892018 166892018 G A ILDR2 Silent p.S341S 0.17 TCGA-QC-A7B5-01 1 166991181 166991181 A C MAEL 3'UTR 0.70 TCGA-QC-A7B5-01 1 167517278 167517278 G A CREG1 Silent p.P145P 0.47 TCGA-QC-A7B5-01 1 167814892 167814892 G A ADCY10 Silent p.F972F 0.38 TCGA-QC-A7B5-01 1 1684333 1684333 G A NADK 3'UTR 0.35 TCGA-QC-A7B5-01 1 16905811 16905811 G A NBPF1 Silent p.L560L 0.11 TCGA-QC-A7B5-01 1 16907920 16907920 G A NBPF1 Silent p.A458A 0.07 TCGA-QC-A7B5-01 1 16907921 16907921 G A NBPF1 Missense_Mutation p.A458V 0.06 tolerated(0.26) possibly_damaging(0.579) TCGA-QC-A7B5-01 1 16918513 16918513 C G NBPF1 Missense_Mutation p.V2L 0.10 deleterious(0.02) benign(0.198) TCGA-QC-A7B5-01 1 16918514 16918514 C T NBPF1 Translation_Start_Site p.M1? 0.10 deleterious(0) benign(0.043) TCGA-QC-A7B5-01 1 16935233 16935233 G A NBPF1 5'UTR 0.04 TCGA-QC-A7B5-01 1 169510971 169510971 C T F5 Silent p.Q1119Q 0.48 TCGA-QC-A7B5-01 1 169541485 169541485 C T F5 Missense_Mutation p.G116E 0.24 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 16957548 16957548 G A CROCCP2 RNA 0.14 TCGA-QC-A7B5-01 1 169697010 169697010 G A SELE Silent p.S446S 0.16 TCGA-QC-A7B5-01 1 171121086 171121086 C T FMO6P Missense_Mutation p.P289S 0.45 deleterious(0) possibly_damaging(0.904) TCGA-QC-A7B5-01 1 171506500 171506500 C T PRRC2C Missense_Mutation p.H796Y 0.21 unknown(0) TCGA-QC-A7B5-01 1 171511038 171511038 C T PRRC2C Missense_Mutation p.S1476F 0.32 unknown(0) TCGA-QC-A7B5-01 1 172425563 172425563 G A C1orf105 Silent p.R69R 0.42 TCGA-QC-A7B5-01 1 173837498 173837498 C T ZBTB37 5'Flank 0.32 TCGA-QC-A7B5-01 1 17405724 17405724 C T PADI2 Intron 0.17 TCGA-QC-A7B5-01 1 174417664 174417664 C T GPR52 Missense_Mutation p.R139C 0.45 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 175334385 175334385 G A TNR Missense_Mutation p.S783F 0.11 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 17563878 17563878 G A PADI1 Silent p.V461V 0.40 TCGA-QC-A7B5-01 1 176769237 176769237 C T PAPPA2 Missense_Mutation p.P1724L 0.37 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 176918416 176918416 G A ASTN1 Silent p.S653S 0.30 TCGA-QC-A7B5-01 1 177199005 177199005 G A BRINP2 5'UTR 0.10 TCGA-QC-A7B5-01 1 177930030 177930030 G A SEC16B Missense_Mutation p.P278S 0.21 deleterious(0.02) possibly_damaging(0.483) TCGA-QC-A7B5-01 1 178482276 178482276 C T TEX35 5'UTR 0.30 TCGA-QC-A7B5-01 1 179399630 179399630 G A AXDND1 Nonsense_Mutation p.W459* 0.46 TCGA-QC-A7B5-01 1 179533899 179533899 C T NPHS2 Missense_Mutation p.E102K 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-QC-A7B5-01 1 18023601 18023601 C T ARHGEF10L Missense_Mutation p.S1189F 0.25 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 1 18023602 18023602 C T ARHGEF10L Silent p.S1189S 0.25 TCGA-QC-A7B5-01 1 180257560 180257560 C T ACBD6 Missense_Mutation p.E263K 0.36 deleterious(0.01) benign(0.427) TCGA-QC-A7B5-01 1 180905046 180905046 C T KIAA1614 Silent p.L667L 0.41 TCGA-QC-A7B5-01 1 180905047 180905047 C T KIAA1614 Missense_Mutation p.P668S 0.41 tolerated(0.07) benign(0.154) TCGA-QC-A7B5-01 1 180905671 180905671 C T KIAA1614 Silent p.L876L 0.15 TCGA-QC-A7B5-01 1 181701796 181701796 G A CACNA1E Silent p.G858G 0.42 TCGA-QC-A7B5-01 1 181767913 181767913 G A CACNA1E Missense_Mutation p.M2295I 0.16 tolerated(0.31) benign(0) TCGA-QC-A7B5-01 1 181769297 181769297 C T CACNA1E 3'Flank 0.15 TCGA-QC-A7B5-01 1 183896158 183896158 G T RGL1 3'UTR 0.48 TCGA-QC-A7B5-01 1 183914611 183914611 C T COLGALT2 Silent p.R408R 0.40 TCGA-QC-A7B5-01 1 185070997 185070997 C T RNF2 3'UTR 0.23 TCGA-QC-A7B5-01 1 186276983 186276983 G A PRG4 Missense_Mutation p.G711E 0.42 unknown(0) TCGA-QC-A7B5-01 1 186276984 186276984 G A PRG4 Silent p.G711G 0.41 TCGA-QC-A7B5-01 1 186363086 186363086 C T C1orf27 Missense_Mutation p.S240F 0.30 deleterious(0) possibly_damaging(0.807) TCGA-QC-A7B5-01 1 186862187 186862187 C T PLA2G4A Missense_Mutation p.P54S 0.17 tolerated(0.26) possibly_damaging(0.843) TCGA-QC-A7B5-01 1 187610372 187610372 C T ERVMER61-1 RNA 0.16 TCGA-QC-A7B5-01 1 19200961 19200961 G A ALDH4A1 Silent p.A525A 0.36 TCGA-QC-A7B5-01 1 192985254 192985254 G A UCHL5 3'UTR 0.33 TCGA-QC-A7B5-01 1 196398872 196398872 T C KCNT2 Silent p.Q218Q 0.29 TCGA-QC-A7B5-01 1 196748309 196748309 C T CFHR3 Missense_Mutation p.P26S 0.28 deleterious(0) probably_damaging(0.991) TCGA-QC-A7B5-01 1 198685878 198685878 G A PTPRC Silent p.T453T 0.09 TCGA-QC-A7B5-01 1 200376611 200376611 A T ZNF281 Missense_Mutation p.F741L 0.26 tolerated(0.26) benign(0.001) TCGA-QC-A7B5-01 1 200880854 200880854 C T C1orf106 Silent p.V411V 0.46 TCGA-QC-A7B5-01 1 200959146 200959146 G A KIF21B Missense_Mutation p.S1019F 0.12 deleterious(0) probably_damaging(0.993) TCGA-QC-A7B5-01 1 201013474 201013474 C T CACNA1S Missense_Mutation p.M1593I 0.33 tolerated(0.51) benign(0.002) TCGA-QC-A7B5-01 1 201356224 201356224 G A LAD1 Missense_Mutation p.L89F 0.30 deleterious(0.01) probably_damaging(0.989) TCGA-QC-A7B5-01 1 201356225 201356225 G A LAD1 Silent p.I88I 0.29 TCGA-QC-A7B5-01 1 202117689 202117689 G A PTPN7 3'UTR 0.29 TCGA-QC-A7B5-01 1 202127347 202127347 C A PTPN7 Nonsense_Mutation p.E174* 0.40 TCGA-QC-A7B5-01 1 202318211 202318211 C T PPP1R12B Silent p.L78L 0.41 TCGA-QC-A7B5-01 1 202914123 202914123 C T ADIPOR1 Missense_Mutation p.R202Q 0.46 tolerated(0.09) benign(0.037) TCGA-QC-A7B5-01 1 203134294 203134294 C T ADORA1 Intron 0.26 TCGA-QC-A7B5-01 1 203148986 203148986 C T CHI3L1 Missense_Mutation p.G305E 0.50 deleterious(0.03) benign(0.258) TCGA-QC-A7B5-01 1 203839242 203839242 G A SNRPE 3'UTR 0.30 TCGA-QC-A7B5-01 1 204438496 204438496 C T PIK3C2B Silent p.G145G 0.28 TCGA-QC-A7B5-01 1 204991701 204991701 C T NFASC 3'UTR 0.23 TCGA-QC-A7B5-01 1 205112649 205112649 C A DSTYK 3'UTR 0.32 TCGA-QC-A7B5-01 1 205116291 205116291 G A DSTYK 3'UTR 0.36 TCGA-QC-A7B5-01 1 207317960 207317960 T C C4BPA Silent p.D564D 0.11 TCGA-QC-A7B5-01 1 207647600 207647600 G A CR2 Missense_Mutation p.G752E 0.29 deleterious(0) possibly_damaging(0.652) TCGA-QC-A7B5-01 1 207751155 207751155 C T CR1 Missense_Mutation p.P1515S 0.13 tolerated(0.42) benign(0.001) TCGA-QC-A7B5-01 1 208062945 208062945 C T CD34 Missense_Mutation p.G207R 0.34 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 209849252 209849252 C T G0S2 Missense_Mutation p.L75F 0.40 tolerated(0.14) possibly_damaging(0.735) TCGA-QC-A7B5-01 1 209878197 209878197 C T HSD11B1 Intron 0.23 TCGA-QC-A7B5-01 1 21070626 21070626 G A HP1BP3 3'UTR 0.19 TCGA-QC-A7B5-01 1 2113692 2113692 G C PRKCZ Intron 0.17 TCGA-QC-A7B5-01 1 212251014 212251014 C T DTL Intron 0.31 TCGA-QC-A7B5-01 1 212617712 212617712 C T NENF Silent p.A90A 0.47 TCGA-QC-A7B5-01 1 212792935 212792935 G A ATF3 3'UTR 0.31 TCGA-QC-A7B5-01 1 214556693 214556693 G A PTPN14 Silent p.S835S 0.44 TCGA-QC-A7B5-01 1 214706579 214706579 G A PTPN14 Intron 0.47 TCGA-QC-A7B5-01 1 215409988 215409988 C T KCNK2 3'UTR 0.21 TCGA-QC-A7B5-01 1 215990402 215990402 C T USH2A Silent p.K3169K 0.32 TCGA-QC-A7B5-01 1 216270490 216270490 T G USH2A Missense_Mutation p.N1565H 0.14 benign(0.088) TCGA-QC-A7B5-01 1 22074761 22074761 C T USP48 Missense_Mutation p.E260K 0.36 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 220978614 220978614 G A MARC1 Silent p.K295K 0.33 TCGA-QC-A7B5-01 1 22158251 22158251 G A HSPG2 Missense_Mutation p.P3749L 0.23 probably_damaging(1) TCGA-QC-A7B5-01 1 22176547 22176547 G A HSPG2 Missense_Mutation p.P2478L 0.29 probably_damaging(0.995) TCGA-QC-A7B5-01 1 22176548 22176548 G A HSPG2 Missense_Mutation p.P2478S 0.28 possibly_damaging(0.836) TCGA-QC-A7B5-01 1 225586220 225586220 A C LBR 3'Flank 0.27 TCGA-QC-A7B5-01 1 2264188 2264188 G A MORN1 Intron 0.17 TCGA-QC-A7B5-01 1 227333377 227333377 C T CDC42BPA Missense_Mutation p.R319Q 0.18 tolerated(0.69) benign(0.095) TCGA-QC-A7B5-01 1 227335252 227335252 G A CDC42BPA Silent p.S234S 0.30 TCGA-QC-A7B5-01 1 22816410 22816410 G A ZBTB40 5'UTR 0.53 TCGA-QC-A7B5-01 1 2282809 2282809 C T MORN1 Intron 0.16 TCGA-QC-A7B5-01 1 2282810 2282810 C T MORN1 Intron 0.16 TCGA-QC-A7B5-01 1 228404937 228404937 C T OBSCN Silent p.T867T 0.41 TCGA-QC-A7B5-01 1 228506684 228506684 C - OBSCN Frame_Shift_Del p.A5701Vfs*6 0.41 TCGA-QC-A7B5-01 1 228506686 228506686 C T OBSCN Missense_Mutation p.R5702W 0.41 probably_damaging(0.992) TCGA-QC-A7B5-01 1 228560206 228560206 G A OBSCN Missense_Mutation p.E8200K 0.26 benign(0.053) TCGA-QC-A7B5-01 1 228879287 228879287 G A RHOU Missense_Mutation p.E193K 0.19 tolerated(0.53) benign(0.2) TCGA-QC-A7B5-01 1 229441193 229441193 C A RAB4A 3'UTR 0.38 TCGA-QC-A7B5-01 1 22987840 22987840 C T C1QB Silent p.I241I 0.42 TCGA-QC-A7B5-01 1 230457701 230457701 G A PGBD5 3'Flank 0.33 TCGA-QC-A7B5-01 1 230839074 230839074 A C AGT Missense_Mutation p.V424G 0.17 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 230898412 230898412 G A CAPN9 Missense_Mutation p.S139N 0.52 tolerated(0.13) benign(0.001) TCGA-QC-A7B5-01 1 231376911 231376911 C T C1orf131 5'UTR 0.48 TCGA-QC-A7B5-01 1 231469400 231469400 C T EXOC8 3'UTR 0.28 TCGA-QC-A7B5-01 1 232144551 232144551 G A DISC1 Missense_Mutation p.G688E 0.53 tolerated(1) benign(0.038) TCGA-QC-A7B5-01 1 233134994 233134994 G A PCNXL2 Silent p.S1820S 0.28 TCGA-QC-A7B5-01 1 234561434 234561434 G A TARBP1 Silent p.I1143I 0.27 TCGA-QC-A7B5-01 1 234742890 234742893 TCTC - IRF2BP2 Frame_Shift_Del p.R585Tfs*12 0.36 TCGA-QC-A7B5-01 1 23519970 23519970 G A HTR1D Missense_Mutation p.S248F 0.28 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 1 235507494 235507494 C T GGPS1 3'UTR 0.17 TCGA-QC-A7B5-01 1 235972736 235972736 A G LYST Missense_Mutation p.V461A 0.14 tolerated(0.41) benign(0.002) TCGA-QC-A7B5-01 1 236719488 236719488 A T HEATR1 Missense_Mutation p.L1809H 0.35 deleterious(0) probably_damaging(0.966) TCGA-QC-A7B5-01 1 236719489 236719489 G A HEATR1 Missense_Mutation p.L1809F 0.38 deleterious(0) probably_damaging(0.912) TCGA-QC-A7B5-01 1 236767332 236767332 A G HEATR1 Missense_Mutation p.S22P 0.42 deleterious(0.01) possibly_damaging(0.52) TCGA-QC-A7B5-01 1 23687948 23687948 G A ZNF436 3'UTR 0.41 TCGA-QC-A7B5-01 1 237758910 237758910 C T RYR2 Silent p.L1517L 0.13 TCGA-QC-A7B5-01 1 237811832 237811832 G A RYR2 Silent p.G2477G 0.16 TCGA-QC-A7B5-01 1 237813397 237813397 G A RYR2 Missense_Mutation p.G2578E 0.13 benign(0.283) TCGA-QC-A7B5-01 1 237819277 237819277 A G RYR2 Missense_Mutation p.T2708A 0.47 possibly_damaging(0.71) TCGA-QC-A7B5-01 1 237829883 237829883 C T RYR2 Silent p.D2836D 0.33 TCGA-QC-A7B5-01 1 237955546 237955546 G A RYR2 Missense_Mutation p.E4569K 0.42 possibly_damaging(0.896) TCGA-QC-A7B5-01 1 237995922 237995922 A C RYR2 Missense_Mutation p.K4960T 0.15 possibly_damaging(0.727) TCGA-QC-A7B5-01 1 240255560 240255560 G A FMN2 Missense_Mutation p.G51R 0.20 unknown(0) TCGA-QC-A7B5-01 1 240976931 240976931 C T RGS7 Missense_Mutation p.E315K 0.44 deleterious(0.03) probably_damaging(0.986) TCGA-QC-A7B5-01 1 24191983 24191983 C T FUCA1 Silent p.K174K 0.30 TCGA-QC-A7B5-01 1 241938503 241938503 G A WDR64 Missense_Mutation p.G833R 0.32 deleterious(0) possibly_damaging(0.646) TCGA-QC-A7B5-01 1 2428090 2428090 C T PLCH2 Missense_Mutation p.S600F 0.37 deleterious(0) probably_damaging(0.968) TCGA-QC-A7B5-01 1 244217518 244217518 G A ZBTB18 Missense_Mutation p.D148N 0.39 tolerated(0.14) possibly_damaging(0.878) TCGA-QC-A7B5-01 1 24432456 24432456 G A MYOM3 Silent p.L172L 0.31 TCGA-QC-A7B5-01 1 245772644 245772644 C T KIF26B Silent p.L576L 0.43 TCGA-QC-A7B5-01 1 247014708 247014708 C T AHCTF1 Missense_Mutation p.G1543R 0.21 tolerated(0.38) benign(0.066) TCGA-QC-A7B5-01 1 247109044 247109044 G A ZNF695 3'UTR 0.21 TCGA-QC-A7B5-01 1 247611742 247611742 G C NLRP3 Missense_Mutation p.S1016T 0.26 tolerated(0.34) benign(0.011) TCGA-QC-A7B5-01 1 247695264 247695264 G A OR2C3 Missense_Mutation p.L184F 0.18 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 1 247875341 247875341 G A OR6F1 Silent p.S239S 0.17 TCGA-QC-A7B5-01 1 247875800 247875800 C T OR6F1 Silent p.L86L 0.33 TCGA-QC-A7B5-01 1 248112520 248112520 C T OR2L8 Missense_Mutation p.R121C 0.13 deleterious(0.01) benign(0.211) TCGA-QC-A7B5-01 1 248309347 248309347 G A OR2M5 Missense_Mutation p.A300T 0.45 deleterious(0) possibly_damaging(0.616) TCGA-QC-A7B5-01 1 248309349 248309349 A C OR2M5 Silent p.A300A 0.46 TCGA-QC-A7B5-01 1 248436694 248436694 C T OR2T33 Silent p.R141R 0.26 TCGA-QC-A7B5-01 1 248551773 248551773 C T OR2T6 Silent p.L288L 0.32 TCGA-QC-A7B5-01 1 248685894 248685894 A T OR2G6 Missense_Mutation p.D316V 0.22 deleterious(0.01) benign(0.002) TCGA-QC-A7B5-01 1 249105793 249105793 G A SH3BP5L 3'UTR 0.17 TCGA-QC-A7B5-01 1 249210871 249210871 A T PGBD2 Missense_Mutation p.M30L 0.14 tolerated(1) benign(0) TCGA-QC-A7B5-01 1 24996032 24996032 C T SRRM1 Missense_Mutation p.P720S 0.44 unknown(0) TCGA-QC-A7B5-01 1 24996033 24996033 C T SRRM1 Missense_Mutation p.P720L 0.46 unknown(0) TCGA-QC-A7B5-01 1 26138361 26138361 C T SEPN1 Silent p.P424P 0.33 TCGA-QC-A7B5-01 1 26232922 26232922 G A STMN1 5'UTR 0.25 TCGA-QC-A7B5-01 1 26516122 26516122 C T CNKSR1 3'UTR 0.29 TCGA-QC-A7B5-01 1 26670409 26670409 C T AIM1L Missense_Mutation p.V40M 0.27 tolerated_low_confidence(0.19) benign(0.008) TCGA-QC-A7B5-01 1 26756028 26756028 G A LIN28A 3'UTR 0.53 TCGA-QC-A7B5-01 1 26769229 26769229 G A DHDDS Missense_Mutation p.R63Q 0.36 tolerated(0.64) benign(0.001) TCGA-QC-A7B5-01 1 26793713 26793713 C T DHDDS Intron 0.33 TCGA-QC-A7B5-01 1 26878196 26878196 C T RPS6KA1 Silent p.F159F 0.20 TCGA-QC-A7B5-01 1 27190798 27190798 G A SFN 3'UTR 0.27 TCGA-QC-A7B5-01 1 27733856 27733856 C A WASF2 3'UTR 0.32 TCGA-QC-A7B5-01 1 27733857 27733857 A G WASF2 3'UTR 0.32 TCGA-QC-A7B5-01 1 27873850 27873850 G A AHDC1 Missense_Mutation p.H1593Y 0.29 deleterious_low_confidence(0.01) benign(0.291) TCGA-QC-A7B5-01 1 28208830 28208830 C T THEMIS2 Missense_Mutation p.P332L 0.39 tolerated(0.23) benign(0.109) TCGA-QC-A7B5-01 1 28904058 28904058 G T TRNAU1AP Missense_Mutation p.M258I 0.33 tolerated(0.23) benign(0.047) TCGA-QC-A7B5-01 1 31405838 31405838 T C PUM1 3'UTR 0.37 TCGA-QC-A7B5-01 1 32280233 32280233 C T SPOCD1 Silent p.G234G 0.18 TCGA-QC-A7B5-01 1 32742050 32742050 G A LCK Silent p.V248V 0.14 TCGA-QC-A7B5-01 1 32742051 32742051 G A LCK Missense_Mutation p.E249K 0.14 tolerated(1) benign(0.006) TCGA-QC-A7B5-01 1 32832067 32832067 C T BSDC1 3'Flank 0.20 TCGA-QC-A7B5-01 1 32832068 32832068 C T BSDC1 3'Flank 0.20 TCGA-QC-A7B5-01 1 33066007 33066007 C T ZBTB8A Missense_Mutation p.P438L 0.38 probably_damaging(0.987) TCGA-QC-A7B5-01 1 33476173 33476173 C T AK2 3'Flank 0.40 TCGA-QC-A7B5-01 1 33547798 33547798 G C ADC 5'UTR 0.15 TCGA-QC-A7B5-01 1 3389732 3389732 C T ARHGEF16 Silent p.F371F 0.50 TCGA-QC-A7B5-01 1 33960531 33960531 C T ZSCAN20 Missense_Mutation p.P863S 0.30 tolerated_low_confidence(0.25) benign(0.007) TCGA-QC-A7B5-01 1 3407118 3407118 G T MEGF6 Silent p.R1534R 0.19 TCGA-QC-A7B5-01 1 34090845 34090845 C T CSMD2 Missense_Mutation p.R1729Q 0.38 tolerated(0.06) benign(0.187) TCGA-QC-A7B5-01 1 34164453 34164453 G A CSMD2 Silent p.S1235S 0.15 TCGA-QC-A7B5-01 1 3598953 3598953 C T TP73 Silent p.S8S 0.25 TCGA-QC-A7B5-01 1 36031202 36031202 G A NCDN Missense_Mutation p.G710S 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-QC-A7B5-01 1 36389287 36389287 C T AGO1 3'UTR 0.27 TCGA-QC-A7B5-01 1 36602359 36602359 C A TRAPPC3 3'UTR 0.30 TCGA-QC-A7B5-01 1 36638985 36638985 C T MAP7D1 Silent p.I215I 0.30 TCGA-QC-A7B5-01 1 36638986 36638986 C T MAP7D1 Nonsense_Mutation p.Q216* 0.30 TCGA-QC-A7B5-01 1 36752122 36752122 C T THRAP3 Silent p.G97G 0.28 TCGA-QC-A7B5-01 1 36752123 36752123 C T THRAP3 Nonsense_Mutation p.Q98* 0.29 TCGA-QC-A7B5-01 1 36784742 36784742 C T SH3D21 Silent p.A280A 0.21 TCGA-QC-A7B5-01 1 36824356 36824356 A T STK40 Missense_Mutation p.D60E 0.41 deleterious(0.01) probably_damaging(0.984) TCGA-QC-A7B5-01 1 38082235 38082235 G A RSPO1 Silent p.I69I 0.48 TCGA-QC-A7B5-01 1 38511059 38511059 G A POU3F1 3'UTR 0.29 TCGA-QC-A7B5-01 1 39800360 39800360 A G MACF1 Intron 0.19 TCGA-QC-A7B5-01 1 39801547 39801547 G A MACF1 Intron 0.37 TCGA-QC-A7B5-01 1 39888108 39888108 C T MACF1 Silent p.G3231G 0.30 TCGA-QC-A7B5-01 1 40506354 40506354 C T CAP1 5'UTR 0.32 TCGA-QC-A7B5-01 1 40767513 40767513 G A COL9A2 Missense_Mutation p.P614L 0.38 deleterious(0.02) probably_damaging(0.93) TCGA-QC-A7B5-01 1 40928636 40928636 G A ZFP69B Missense_Mutation p.R327K 0.29 tolerated(0.05) probably_damaging(0.948) TCGA-QC-A7B5-01 1 41475838 41475838 C T CTPS1 Missense_Mutation p.T566I 0.32 tolerated(0.18) benign(0.033) TCGA-QC-A7B5-01 1 41475839 41475839 C T CTPS1 Silent p.T566T 0.32 TCGA-QC-A7B5-01 1 42048123 42048123 G A HIVEP3 Silent p.S782S 0.14 TCGA-QC-A7B5-01 1 43011180 43011180 G A CCDC30 Missense_Mutation p.D119N 0.38 deleterious(0) probably_damaging(0.963) TCGA-QC-A7B5-01 1 43638024 43638024 G A EBNA1BP2 Silent p.S23S 0.16 TCGA-QC-A7B5-01 1 43638153 43638153 A C EBNA1BP2 5'UTR 0.62 TCGA-QC-A7B5-01 1 43775167 43775167 G A TIE1 Missense_Mutation p.G433S 0.20 deleterious(0.02) probably_damaging(1) TCGA-QC-A7B5-01 1 44437598 44437598 C T DPH2 Missense_Mutation p.P342S 0.31 tolerated(0.09) probably_damaging(0.967) TCGA-QC-A7B5-01 1 45806842 45806842 C T TOE1 Silent p.S50S 0.15 TCGA-QC-A7B5-01 1 46079853 46079853 G A NASP Missense_Mutation p.R531K 0.40 tolerated(0.19) probably_damaging(0.928) TCGA-QC-A7B5-01 1 46744895 46744895 G A LRRC41 Silent p.F726F 0.32 TCGA-QC-A7B5-01 1 46808971 46808971 C T NSUN4 Intron 0.44 TCGA-QC-A7B5-01 1 46879243 46879243 C T FAAH Missense_Mutation p.S579F 0.22 deleterious(0) probably_damaging(0.991) TCGA-QC-A7B5-01 1 47280766 47280766 G T CYP4B1 Silent p.L301L 0.31 TCGA-QC-A7B5-01 1 47280768 47280768 C T CYP4B1 Missense_Mutation p.S302L 0.29 deleterious(0.01) probably_damaging(0.969) TCGA-QC-A7B5-01 1 47280916 47280916 G A CYP4B1 Silent p.G351G 0.19 TCGA-QC-A7B5-01 1 47407121 47407121 G A CYP4A11 5'UTR 0.35 TCGA-QC-A7B5-01 1 47571853 47571853 G A CYP4Z1 Missense_Mutation p.R374H 0.32 deleterious(0.01) probably_damaging(0.954) TCGA-QC-A7B5-01 1 47610344 47610344 C T CYP4A22 Silent p.H340H 0.15 TCGA-QC-A7B5-01 1 47717309 47717309 T A STIL Missense_Mutation p.K1122N 0.36 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 1 47746546 47746546 A G STIL Silent p.N528N 0.24 TCGA-QC-A7B5-01 1 48864914 48864914 G A SPATA6 Intron 0.13 TCGA-QC-A7B5-01 1 51761744 51761744 G A TTC39A Intron 0.32 TCGA-QC-A7B5-01 1 52703568 52703568 G A ZFYVE9 Missense_Mutation p.R160K 0.38 tolerated_low_confidence(0.13) benign(0.007) TCGA-QC-A7B5-01 1 52732455 52732455 C T ZFYVE9 Missense_Mutation p.P803S 0.33 deleterious(0.05) probably_damaging(0.94) TCGA-QC-A7B5-01 1 53516325 53516325 C T SCP2 Silent p.L531L 0.38 TCGA-QC-A7B5-01 1 53904604 53904604 C T SLC25A3P1 RNA 0.33 TCGA-QC-A7B5-01 1 54332025 54332025 G A YIPF1 Missense_Mutation p.R227C 0.37 deleterious(0.02) benign(0.219) TCGA-QC-A7B5-01 1 54371793 54371793 G A DIO1 Missense_Mutation p.M169I 0.20 tolerated(0.95) benign(0.001) TCGA-QC-A7B5-01 1 54644984 54644984 G A CYB5RL Silent p.A194A 0.16 TCGA-QC-A7B5-01 1 55118895 55118895 C T MROH7 Missense_Mutation p.S99F 0.22 deleterious_low_confidence(0.03) benign(0.024) TCGA-QC-A7B5-01 1 55136211 55136211 C T MROH7 Silent p.S477S 0.31 TCGA-QC-A7B5-01 1 55145059 55145059 G A MROH7 Missense_Mutation p.E725K 0.27 tolerated(0.08) benign(0.324) TCGA-QC-A7B5-01 1 55152086 55152086 G A MROH7 Silent p.K892K 0.28 TCGA-QC-A7B5-01 1 55340802 55340802 C T DHCR24 Silent p.L192L 0.35 TCGA-QC-A7B5-01 1 55472945 55472945 G A BSND Missense_Mutation p.G183D 0.32 tolerated(0.1) benign(0.014) TCGA-QC-A7B5-01 1 57406609 57406609 G A C8B Silent p.T437T 0.28 TCGA-QC-A7B5-01 1 60359339 60359339 G A CYP2J2 Missense_Mutation p.A498V 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-QC-A7B5-01 1 61892191 61892191 G A NFIA Missense_Mutation p.R537Q 0.40 deleterious_low_confidence(0.04) probably_damaging(0.913) TCGA-QC-A7B5-01 1 64095223 64095223 G A PGM1 Missense_Mutation p.G143E 0.31 tolerated(0.36) possibly_damaging(0.729) TCGA-QC-A7B5-01 1 6520240 6520240 C T ESPN 3'UTR 0.37 TCGA-QC-A7B5-01 1 6527177 6527177 C T PLEKHG5 3'Flank 0.25 TCGA-QC-A7B5-01 1 65858213 65858213 C T DNAJC6 Missense_Mutation p.P523L 0.09 tolerated(0.18) benign(0.412) TCGA-QC-A7B5-01 1 6586798 6586798 G T NOL9 Silent p.L639L 0.43 TCGA-QC-A7B5-01 1 66070818 66070818 C T LEPR Nonsense_Mutation p.Q501* 0.18 TCGA-QC-A7B5-01 1 6680241 6680241 G A PHF13 Missense_Mutation p.D174N 0.42 tolerated(0.21) probably_damaging(0.913) TCGA-QC-A7B5-01 1 6699997 6699997 C T DNAJC11 Silent p.L406L 0.24 TCGA-QC-A7B5-01 1 67243436 67243436 T C TCTEX1D1 3'UTR 0.50 TCGA-QC-A7B5-01 1 68616031 68616031 A G WLS Missense_Mutation p.F269S 0.37 deleterious(0) probably_damaging(0.979) TCGA-QC-A7B5-01 1 68620813 68620813 C T WLS Missense_Mutation p.G210E 0.07 tolerated(0.22) benign(0.062) TCGA-QC-A7B5-01 1 68947951 68947951 G A DEPDC1 Missense_Mutation p.L514F 0.35 tolerated(0.2) probably_damaging(0.927) TCGA-QC-A7B5-01 1 70225939 70225939 C T LRRC7 Nonsense_Mutation p.R18* 0.31 TCGA-QC-A7B5-01 1 71871544 71871544 A G NEGR1 3'UTR 0.35 TCGA-QC-A7B5-01 1 72163699 72163699 A G NEGR1 Missense_Mutation p.V220A 0.44 deleterious(0.01) benign(0.122) TCGA-QC-A7B5-01 1 76198762 76198762 G A ACADM Intron 0.46 TCGA-QC-A7B5-01 1 77510053 77510053 G A ST6GALNAC5 Silent p.R142R 0.14 TCGA-QC-A7B5-01 1 77987609 77987609 G A AK5 Missense_Mutation p.G470E 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 1 78030487 78030487 T A ZZZ3 3'UTR 0.27 TCGA-QC-A7B5-01 1 78338777 78338777 C T FAM73A Missense_Mutation p.S551F 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-QC-A7B5-01 1 7889942 7889942 G A PER3 Missense_Mutation p.G970S 0.40 tolerated_low_confidence(0.64) benign(0.01) TCGA-QC-A7B5-01 1 7889943 7889943 G A PER3 Missense_Mutation p.G970D 0.41 tolerated_low_confidence(0.19) benign(0.076) TCGA-QC-A7B5-01 1 809511 809511 G A FAM41C 5'Flank 0.44 TCGA-QC-A7B5-01 1 85742059 85742059 C T BCL10 5'UTR 0.20 TCGA-QC-A7B5-01 1 8601374 8601374 C T RERE Silent p.G243G 0.50 TCGA-QC-A7B5-01 1 8601375 8601375 C T RERE Missense_Mutation p.G243E 0.50 probably_damaging(1) TCGA-QC-A7B5-01 1 86283740 86283740 G A COL24A1 Missense_Mutation p.P1274S 0.15 tolerated(0.34) benign(0.345) TCGA-QC-A7B5-01 1 86590695 86590695 C T COL24A1 Missense_Mutation p.D442N 0.36 tolerated(0.19) benign(0.04) TCGA-QC-A7B5-01 1 86590696 86590696 C T COL24A1 Silent p.V441V 0.36 TCGA-QC-A7B5-01 1 86952285 86952285 T C CLCA1 Missense_Mutation p.V344A 0.33 tolerated(0.09) benign(0.039) TCGA-QC-A7B5-01 1 87113082 87113082 C T RP4-651E10.4 Intron 0.32 TCGA-QC-A7B5-01 1 87571528 87571528 C T HS2ST1 3'UTR 0.26 TCGA-QC-A7B5-01 1 89271279 89271279 T A PKN2 Missense_Mutation p.F534Y 0.38 tolerated(0.61) benign(0.005) TCGA-QC-A7B5-01 1 89585888 89585888 G A GBP2 Silent p.I134I 0.15 TCGA-QC-A7B5-01 1 900584 900584 C T KLHL17 3'UTR 0.20 TCGA-QC-A7B5-01 1 90400617 90400617 G C LRRC8D Missense_Mutation p.D664H 0.48 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 1 91406145 91406145 C A ZNF644 Missense_Mutation p.D256Y 0.29 deleterious(0) possibly_damaging(0.713) TCGA-QC-A7B5-01 1 92224237 92224237 G A TGFBR3 Missense_Mutation p.S106F 0.32 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 1 94033401 94033401 C T BCAR3 Missense_Mutation p.R661K 0.13 deleterious(0) probably_damaging(0.99) TCGA-QC-A7B5-01 1 94650616 94650616 A C ARHGAP29 Missense_Mutation p.C641G 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-QC-A7B5-01 1 94939328 94939328 C T ABCD3 Silent p.I114I 0.21 TCGA-QC-A7B5-01 1 97187323 97187323 A C PTBP2 5'Flank 0.28 TCGA-QC-A7B5-01 1 97547995 97547995 C T DPYD Missense_Mutation p.G933E 0.32 deleterious(0.04) probably_damaging(0.99) TCGA-QC-A7B5-01 1 9795078 9795078 G A CLSTN1 Missense_Mutation p.P680S 0.33 tolerated(0.05) probably_damaging(0.995) TCGA-QC-A7B5-01 1 9795085 9795085 G A CLSTN1 Silent p.F677F 0.34 TCGA-QC-A7B5-01 1 98165067 98165067 G A DPYD Missense_Mutation p.P174S 0.32 deleterious(0.01) possibly_damaging(0.453) TCGA-QC-A7B5-01 1 99355946 99355946 G A LPPR5 3'Flank 0.29 TCGA-QC-A7B5-01 20 1143805 1143805 G A PSMF1 Missense_Mutation p.G195R 0.26 tolerated(0.29) benign(0.097) TCGA-QC-A7B5-01 20 1299017 1299017 G A SDCBP2 Missense_Mutation p.S57F 0.32 deleterious(0) probably_damaging(0.927) TCGA-QC-A7B5-01 20 1460520 1460520 G A SIRPB2 Silent p.F92F 0.25 TCGA-QC-A7B5-01 20 1532496 1532496 C T SIRPD Missense_Mutation p.E88K 0.35 tolerated(0.28) benign(0.134) TCGA-QC-A7B5-01 20 16721501 16721501 T C SNRPB2 Missense_Mutation p.F177L 0.53 tolerated(0.17) benign(0.364) TCGA-QC-A7B5-01 20 17462554 17462554 G A PCSK2 Missense_Mutation p.E586K 0.25 tolerated(0.31) probably_damaging(0.989) TCGA-QC-A7B5-01 20 1961226 1961226 C T PDYN Missense_Mutation p.E170K 0.16 tolerated(0.43) benign(0.015) TCGA-QC-A7B5-01 20 1961227 1961227 C T PDYN Silent p.K169K 0.17 TCGA-QC-A7B5-01 20 20026105 20026105 C T CRNKL1 Silent p.K377K 0.42 TCGA-QC-A7B5-01 20 20051575 20051575 C T C20orf26 Missense_Mutation p.P74L 0.34 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 20 21492260 21492260 C T NKX2-2 3'UTR 0.29 TCGA-QC-A7B5-01 20 21695441 21695441 G A PAX1 Silent p.%3D 0.15 TCGA-QC-A7B5-01 20 23017086 23017086 C T SSTR4 Silent p.F322F 0.17 TCGA-QC-A7B5-01 20 23066511 23066511 G A CD93 Missense_Mutation p.P107S 0.19 tolerated(0.58) benign(0.038) TCGA-QC-A7B5-01 20 24524039 24524039 G A SYNDIG1 Nonsense_Mutation p.W102* 0.20 TCGA-QC-A7B5-01 20 24646785 24646785 C T SYNDIG1 3'UTR 0.18 TCGA-QC-A7B5-01 20 24646786 24646786 C T SYNDIG1 3'UTR 0.18 TCGA-QC-A7B5-01 20 25252028 25252028 T C PYGB Missense_Mutation p.L145P 0.25 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 20 2539171 2539171 G A TMC2 Missense_Mutation p.G51E 0.26 tolerated_low_confidence(0.37) benign(0.074) TCGA-QC-A7B5-01 20 257745 257745 C T C20orf96 Silent p.L255L 0.35 TCGA-QC-A7B5-01 20 2776316 2776316 G A CPXM1 Missense_Mutation p.P550L 0.42 tolerated(0.45) benign(0.008) TCGA-QC-A7B5-01 20 2796014 2796014 C T C20orf141 Nonsense_Mutation p.Q62* 0.17 TCGA-QC-A7B5-01 20 29976941 29976941 G A DEFB119 Missense_Mutation p.P52S 0.35 tolerated(0.28) probably_damaging(0.982) TCGA-QC-A7B5-01 20 3017818 3017818 G A PTPRA Silent p.T739T 0.30 TCGA-QC-A7B5-01 20 3017819 3017819 G A PTPRA Missense_Mutation p.G740R 0.29 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 20 30432509 30432509 G A FOXS1 Silent p.P279P 0.23 TCGA-QC-A7B5-01 20 30433190 30433190 G A FOXS1 Silent p.F52F 0.36 TCGA-QC-A7B5-01 20 30458924 30458924 G A TTLL9 Splice_Site 0.30 TCGA-QC-A7B5-01 20 30533125 30533125 G A PDRG1 3'UTR 0.26 TCGA-QC-A7B5-01 20 30539854 30539854 C T PDRG1 5'UTR 0.38 TCGA-QC-A7B5-01 20 31389085 31389085 G A DNMT3B Silent p.E666E 0.11 TCGA-QC-A7B5-01 20 31463787 31463787 G A EFCAB8 Silent p.S88S 0.30 TCGA-QC-A7B5-01 20 31463788 31463788 G A EFCAB8 Missense_Mutation p.D89N 0.30 TCGA-QC-A7B5-01 20 31604871 31604871 G A BPIFB2 Silent p.L180L 0.31 TCGA-QC-A7B5-01 20 31627169 31627169 C T BPIFB6 Missense_Mutation p.P306L 0.33 deleterious(0) probably_damaging(0.979) TCGA-QC-A7B5-01 20 31790413 31790413 C T BPIFA4P RNA 0.35 TCGA-QC-A7B5-01 20 31877727 31877727 G A BPIFB1 Silent p.Q98Q 0.42 TCGA-QC-A7B5-01 20 31877728 31877728 G A BPIFB1 Missense_Mutation p.V99M 0.42 deleterious(0) probably_damaging(0.965) TCGA-QC-A7B5-01 20 3210075 3210075 C G SLC4A11 Missense_Mutation p.R632P 0.30 deleterious(0) probably_damaging(0.997) TCGA-QC-A7B5-01 20 32664854 32664854 G A RALY Missense_Mutation p.G227R 0.24 tolerated_low_confidence(0.09) benign(0.051) TCGA-QC-A7B5-01 20 33875114 33875114 C T FAM83C Missense_Mutation p.E490K 0.24 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QC-A7B5-01 20 34025453 34025453 G A GDF5 Silent p.L86L 0.29 TCGA-QC-A7B5-01 20 34025454 34025454 G A GDF5 Silent p.G85G 0.29 TCGA-QC-A7B5-01 20 34078523 34078523 G A CEP250 Missense_Mutation p.E883K 0.38 probably_damaging(0.999) TCGA-QC-A7B5-01 20 34237665 34237665 G A RBM12 3'UTR 0.26 TCGA-QC-A7B5-01 20 34596372 34596372 C T CNBD2 Missense_Mutation p.P375L 0.25 deleterious(0.02) probably_damaging(0.933) TCGA-QC-A7B5-01 20 34596373 34596373 C T CNBD2 Silent p.P375P 0.24 TCGA-QC-A7B5-01 20 34638437 34638437 C T LINC00657 RNA 0.44 TCGA-QC-A7B5-01 20 35234409 35234409 G A C20orf24 Missense_Mutation p.A19T 0.38 tolerated_low_confidence(0.16) benign(0.046) TCGA-QC-A7B5-01 20 3542927 3542927 G A ATRN Silent p.K484K 0.38 TCGA-QC-A7B5-01 20 35443578 35443578 C T SOGA1 Missense_Mutation p.G756E 0.35 tolerated(0.3) benign(0.007) TCGA-QC-A7B5-01 20 35443579 35443579 C T SOGA1 Missense_Mutation p.G756R 0.34 tolerated(0.2) benign(0.394) TCGA-QC-A7B5-01 20 3562929 3562929 G A ATRN Missense_Mutation p.E898K 0.37 tolerated(0.09) benign(0.033) TCGA-QC-A7B5-01 20 3652610 3652610 G A ADAM33 Silent p.A540A 0.24 TCGA-QC-A7B5-01 20 36641177 36641177 G A TTI1 Nonsense_Mutation p.Q348* 0.27 TCGA-QC-A7B5-01 20 36760823 36760823 G A TGM2 Silent p.A565A 0.40 TCGA-QC-A7B5-01 20 3677343 3677343 G A SIGLEC1 Missense_Mutation p.S858F 0.37 tolerated(0.08) benign(0.17) TCGA-QC-A7B5-01 20 36846744 36846744 C T KIAA1755 Missense_Mutation p.G861R 0.29 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 20 37202836 37202836 C T RALGAPB Missense_Mutation p.P1396S 0.41 tolerated(0.24) probably_damaging(0.999) TCGA-QC-A7B5-01 20 3721480 3721480 C T HSPA12B Missense_Mutation p.S21F 0.28 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-QC-A7B5-01 20 3733483 3733483 G A HSPA12B 3'UTR 0.41 TCGA-QC-A7B5-01 20 37400341 37400341 G - ACTR5 Frame_Shift_Del p.C569Lfs*93 0.30 TCGA-QC-A7B5-01 20 37400343 37400343 G A ACTR5 Missense_Mutation p.A570T 0.30 tolerated(0.23) possibly_damaging(0.765) TCGA-QC-A7B5-01 20 37591005 37591005 C T DHX35 5'UTR 0.19 TCGA-QC-A7B5-01 20 398254 398254 C T RBCK1 Silent p.L84L 0.20 TCGA-QC-A7B5-01 20 40050119 40050119 G A CHD6 Missense_Mutation p.S1719F 0.42 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-QC-A7B5-01 20 40050121 40050121 G A CHD6 Silent p.S1718S 0.41 TCGA-QC-A7B5-01 20 40052235 40052235 A C CHD6 Missense_Mutation p.I1484M 0.39 tolerated(0.42) benign(0.152) TCGA-QC-A7B5-01 20 40192714 40192714 A T CHD6 Intron 0.26 TCGA-QC-A7B5-01 20 418378 418378 C T TBC1D20 3'UTR 0.24 TCGA-QC-A7B5-01 20 43379501 43379501 C T KCNK15 3'UTR 0.31 TCGA-QC-A7B5-01 20 43384458 43384458 T C RIMS4 3'Flank 0.33 TCGA-QC-A7B5-01 20 43561059 43561059 C T PABPC1L Missense_Mutation p.P439L 0.11 tolerated(0.24) benign(0.009) TCGA-QC-A7B5-01 20 44600823 44600823 C T ZNF335 5'Flank 0.31 TCGA-QC-A7B5-01 20 44671893 44671893 C T SLC12A5 Missense_Mutation p.P413S 0.18 tolerated(0.14) benign(0.271) TCGA-QC-A7B5-01 20 44692194 44692194 C T NCOA5 Missense_Mutation p.E319K 0.34 tolerated(0.1) possibly_damaging(0.716) TCGA-QC-A7B5-01 20 45891156 45891156 G A ZMYND8 Silent p.T499T 0.28 TCGA-QC-A7B5-01 20 47621718 47621718 G T ARFGEF2 Missense_Mutation p.D1182Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 20 48129663 48129663 G A PTGIS Missense_Mutation p.P387L 0.31 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 20 48260071 48260071 G A B4GALT5 Missense_Mutation p.R161W 0.40 deleterious(0.01) probably_damaging(0.967) TCGA-QC-A7B5-01 20 48260127 48260127 G A B4GALT5 Missense_Mutation p.S142F 0.36 deleterious(0.01) possibly_damaging(0.774) TCGA-QC-A7B5-01 20 49510023 49510023 G A ADNP Missense_Mutation p.P410S 0.40 tolerated(0.4) benign(0.001) TCGA-QC-A7B5-01 20 56191429 56191429 C T ZBP1 Missense_Mutation p.E44K 0.13 tolerated(0.78) possibly_damaging(0.874) TCGA-QC-A7B5-01 20 56821143 56821143 G A PPP4R1L Silent p.S230S 0.12 TCGA-QC-A7B5-01 20 57248696 57248696 C T STX16 Missense_Mutation p.L268F 0.16 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 20 57769273 57769273 G A ZNF831 Missense_Mutation p.D1067N 0.15 tolerated(0.16) possibly_damaging(0.738) TCGA-QC-A7B5-01 20 57828127 57828127 C T ZNF831 Silent p.T1374T 0.27 TCGA-QC-A7B5-01 20 58562572 58562572 G A CDH26 Missense_Mutation p.R301Q 0.43 tolerated(0.55) benign(0.018) TCGA-QC-A7B5-01 20 60348068 60348068 G A CDH4 Missense_Mutation p.G136R 0.15 tolerated(0.45) benign(0.01) TCGA-QC-A7B5-01 20 60348069 60348069 G A CDH4 Missense_Mutation p.G136E 0.14 tolerated(0.85) benign(0.169) TCGA-QC-A7B5-01 20 60427860 60427860 C T CDH4 Silent p.I261I 0.33 TCGA-QC-A7B5-01 20 6088260 6088260 G A FERMT1 Silent p.S256S 0.33 TCGA-QC-A7B5-01 20 6096461 6096461 G A FERMT1 Silent p.L128L 0.22 TCGA-QC-A7B5-01 20 61511108 61511108 G A DIDO1 Missense_Mutation p.S2067L 0.25 benign(0.01) TCGA-QC-A7B5-01 20 61937270 61937270 C A COL20A1 Missense_Mutation p.S125R 0.34 tolerated(0.16) benign(0.056) TCGA-QC-A7B5-01 20 62173583 62173583 C T SRMS Silent p.S293S 0.17 TCGA-QC-A7B5-01 20 62193253 62193253 G A HELZ2 Missense_Mutation p.P2205L 0.28 tolerated(0.34) benign(0.003) TCGA-QC-A7B5-01 20 62492816 62492816 G A ABHD16B 5'UTR 0.37 TCGA-QC-A7B5-01 20 62591377 62591377 G A ZNF512B Missense_Mutation p.P848L 0.29 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 20 62851279 62851279 G A MYT1 Missense_Mutation p.D729N 0.20 probably_damaging(1) TCGA-QC-A7B5-01 20 76647 76647 T A DEFB125 Silent p.G20G 0.37 TCGA-QC-A7B5-01 20 8745892 8745892 G A PLCB1 Silent p.K939K 0.33 TCGA-QC-A7B5-01 20 9518980 9518980 T C PAK7 3'UTR 0.32 TCGA-QC-A7B5-01 20 9520098 9520098 G A PAK7 3'UTR 0.38 TCGA-QC-A7B5-01 21 10908889 10908889 G A TPTE Missense_Mutation p.P486S 0.06 deleterious(0) probably_damaging(0.991) TCGA-QC-A7B5-01 21 10916410 10916410 C T TPTE Silent p.R412R 0.14 TCGA-QC-A7B5-01 21 10944776 10944776 T C TPTE Missense_Mutation p.Y153C 0.14 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 21 15220676 15220676 G A CYP4F29P RNA 0.35 TCGA-QC-A7B5-01 21 19687538 19687538 C T TMPRSS15 Missense_Mutation p.G653R 0.15 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 21 19698792 19698792 C T TMPRSS15 Silent p.G626G 0.34 TCGA-QC-A7B5-01 21 22881316 22881316 G A NCAM2 Missense_Mutation p.G741E 0.18 deleterious(0) possibly_damaging(0.816) TCGA-QC-A7B5-01 21 30724022 30724022 C T BACH1-IT1 RNA 0.25 TCGA-QC-A7B5-01 21 31720836 31720836 G A KRTAP23-1 Missense_Mutation p.S30L 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-QC-A7B5-01 21 31874326 31874326 C G KRTAP19-5 Missense_Mutation p.G28A 0.31 tolerated_low_confidence(0.14) unknown(0) TCGA-QC-A7B5-01 21 32119340 32119340 A C KRTAP21-2 Missense_Mutation p.C61G 0.19 deleterious_low_confidence(0) unknown(0) TCGA-QC-A7B5-01 21 33057903 33057903 G A SCAF4 Silent p.F729F 0.39 TCGA-QC-A7B5-01 21 33651119 33651119 C T MIS18A Silent p.L69L 0.46 TCGA-QC-A7B5-01 21 35183458 35183458 C T ITSN1 Silent p.P833P 0.52 TCGA-QC-A7B5-01 21 39817383 39817383 G A ERG Silent p.P67P 0.26 TCGA-QC-A7B5-01 21 40566665 40566665 G A BRWD1 Intron 0.17 TCGA-QC-A7B5-01 21 43171362 43171362 G A RIPK4 Missense_Mutation p.S173L 0.33 tolerated(0.18) benign(0.063) TCGA-QC-A7B5-01 21 43243717 43243717 A T PRDM15 Missense_Mutation p.F939Y 0.30 tolerated(0.11) benign(0.442) TCGA-QC-A7B5-01 21 43309419 43309419 G A C2CD2 Silent p.F635F 0.29 TCGA-QC-A7B5-01 21 44839293 44839293 G A SIK1 Silent p.T395T 0.32 TCGA-QC-A7B5-01 21 45674502 45674502 C T DNMT3L Missense_Mutation p.D231N 0.28 tolerated(0.73) possibly_damaging(0.769) TCGA-QC-A7B5-01 21 45742861 45742861 C T PFKL Nonsense_Mutation p.Q476* 0.21 TCGA-QC-A7B5-01 21 47417647 47417647 C T COL6A1 Missense_Mutation p.P499S 0.17 deleterious(0.04) possibly_damaging(0.642) TCGA-QC-A7B5-01 21 47588307 47588307 C T SPATC1L Silent p.R153R 0.32 TCGA-QC-A7B5-01 21 47662715 47662715 C T MCM3AP Splice_Site p.X1809_splice 0.29 TCGA-QC-A7B5-01 21 47662716 47662716 C T MCM3AP Missense_Mutation p.R1809H 0.29 tolerated(0.55) possibly_damaging(0.549) TCGA-QC-A7B5-01 21 47669508 47669514 ATTTTGT TTTTGG MCM3AP Intron 0.25 TCGA-QC-A7B5-01 21 47704036 47704036 G A MCM3AP Missense_Mutation p.R389W 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-QC-A7B5-01 21 47704037 47704037 G A MCM3AP Silent p.S388S 0.27 TCGA-QC-A7B5-01 21 47918713 47918713 G T DIP2A Missense_Mutation p.A208S 0.29 tolerated(0.86) benign(0.046) TCGA-QC-A7B5-01 21 47953932 47953932 C T DIP2A Missense_Mutation p.S482F 0.33 tolerated(0.7) possibly_damaging(0.765) TCGA-QC-A7B5-01 21 47987694 47987694 C T DIP2A 3'UTR 0.30 TCGA-QC-A7B5-01 22 16449127 16449127 G A OR11H1 Silent p.F226F 0.32 TCGA-QC-A7B5-01 22 17600084 17600084 C T CECR6 3'UTR 0.25 TCGA-QC-A7B5-01 22 17978523 17978523 C G CECR2 Missense_Mutation p.R122G 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-QC-A7B5-01 22 18604452 18604452 G A TUBA8 Silent p.L70L 0.39 TCGA-QC-A7B5-01 22 18981942 18981942 C T DGCR5 RNA 0.17 TCGA-QC-A7B5-01 22 19707965 19707965 C T SEPT5 Missense_Mutation p.P162L 0.32 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 22 19907071 19907071 G A TXNRD2 Missense_Mutation p.P75L 0.33 deleterious(0.03) benign(0.145) TCGA-QC-A7B5-01 22 19907072 19907072 G A TXNRD2 Missense_Mutation p.P75S 0.34 deleterious(0.03) benign(0.177) TCGA-QC-A7B5-01 22 20077694 20077694 G A DGCR8 Missense_Mutation p.E407K 0.25 tolerated(0.53) benign(0.058) TCGA-QC-A7B5-01 22 21174081 21174081 G A PI4KA Missense_Mutation p.P213S 0.28 tolerated(0.52) benign(0.001) TCGA-QC-A7B5-01 22 21188907 21188907 G A PI4KA Missense_Mutation p.L104F 0.21 tolerated(0.07) benign(0.033) TCGA-QC-A7B5-01 22 21224624 21224624 G A SNAP29 Splice_Site p.X80_splice 0.39 TCGA-QC-A7B5-01 22 21224625 21224625 G A SNAP29 Missense_Mutation p.E80K 0.39 deleterious(0) probably_damaging(0.981) TCGA-QC-A7B5-01 22 21380901 21380901 C T P2RX6 Silent p.L441L 0.31 TCGA-QC-A7B5-01 22 22065167 22065167 C T YPEL1 5'UTR 0.47 TCGA-QC-A7B5-01 22 22065168 22065168 C T YPEL1 5'UTR 0.47 TCGA-QC-A7B5-01 22 22348915 22348915 G A PRAMENP RNA 0.45 TCGA-QC-A7B5-01 22 22348916 22348916 G A PRAMENP RNA 0.45 TCGA-QC-A7B5-01 22 22599580 22599580 C T VPREB1 Missense_Mutation p.S90F 0.23 deleterious(0.01) possibly_damaging(0.582) TCGA-QC-A7B5-01 22 23077427 23077427 G A IGLV2-18 Missense_Mutation p.M68I 0.07 tolerated_low_confidence(0.3) benign(0.002) TCGA-QC-A7B5-01 22 23090290 23090290 C T IGLV3-16 Missense_Mutation p.P77S 0.10 tolerated(0.06) benign(0.175) TCGA-QC-A7B5-01 22 23165548 23165548 C T IGLV2-8 Missense_Mutation p.S40F 0.31 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-QC-A7B5-01 22 24041307 24041307 A T RGL4 3'UTR 0.21 TCGA-QC-A7B5-01 22 24041308 24041308 G A RGL4 3'UTR 0.24 TCGA-QC-A7B5-01 22 24581170 24581170 G A SUSD2 Silent p.E297E 0.29 TCGA-QC-A7B5-01 22 24622729 24622729 T C GGT5 Missense_Mutation p.N303S 0.36 tolerated(0.22) possibly_damaging(0.863) TCGA-QC-A7B5-01 22 24698213 24698213 G A SPECC1L Missense_Mutation p.S5N 0.37 deleterious(0.05) benign(0.054) TCGA-QC-A7B5-01 22 25251312 25251312 C T SGSM1 Missense_Mutation p.P195L 0.30 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 22 25251313 25251313 C T SGSM1 Silent p.P195P 0.30 TCGA-QC-A7B5-01 22 26861486 26861486 G A HPS4 Silent p.I246I 0.27 TCGA-QC-A7B5-01 22 26895474 26895474 C T TFIP11 Missense_Mutation p.E309K 0.41 tolerated(0.61) benign(0.034) TCGA-QC-A7B5-01 22 26937024 26937024 G A TPST2 Silent p.S191S 0.38 TCGA-QC-A7B5-01 22 26937025 26937025 G A TPST2 Missense_Mutation p.S191F 0.38 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 22 28147004 28147004 C T MN1 Missense_Mutation p.D1288N 0.35 possibly_damaging(0.535) TCGA-QC-A7B5-01 22 29091738 29091738 C T CHEK2 Missense_Mutation p.A450T 0.36 deleterious(0.04) possibly_damaging(0.804) TCGA-QC-A7B5-01 22 29115390 29115390 G A CHEK2 Missense_Mutation p.L269F 0.43 deleterious(0) probably_damaging(0.955) TCGA-QC-A7B5-01 22 30418097 30418097 G A MTMR3 Missense_Mutation p.S1102N 0.34 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 22 30766813 30766813 C T CCDC157 Silent p.L307L 0.47 TCGA-QC-A7B5-01 22 30769697 30769697 G A CCDC157 Missense_Mutation p.E483K 0.29 tolerated(0.13) benign(0.183) TCGA-QC-A7B5-01 22 30776132 30776132 C T RNF215 Silent p.R309R 0.32 TCGA-QC-A7B5-01 22 30863008 30863008 C T SEC14L3 Silent p.L160L 0.33 TCGA-QC-A7B5-01 22 30988178 30988178 G A PES1 5'Flank 0.39 TCGA-QC-A7B5-01 22 31302390 31302390 C A OSBP2 3'UTR 0.14 TCGA-QC-A7B5-01 22 32109158 32109158 G A PRR14L Missense_Mutation p.P1556L 0.11 tolerated(0.17) benign(0.006) TCGA-QC-A7B5-01 22 32586917 32586917 G A RFPL2 Missense_Mutation p.H327Y 0.22 tolerated(0.09) probably_damaging(0.998) TCGA-QC-A7B5-01 22 32754117 32754117 C T RFPL3 Missense_Mutation p.P20L 0.29 tolerated_low_confidence(0.31) benign(0.003) TCGA-QC-A7B5-01 22 33669333 33669333 G - LARGE 3'UTR 0.18 TCGA-QC-A7B5-01 22 35481732 35481732 G A ISX 3'UTR 0.40 TCGA-QC-A7B5-01 22 36123190 36123190 T C APOL5 Missense_Mutation p.S359P 0.29 deleterious_low_confidence(0.02) benign(0.307) TCGA-QC-A7B5-01 22 36123192 36123192 C T APOL5 Silent p.S359S 0.30 TCGA-QC-A7B5-01 22 36587954 36587954 C T APOL4 Missense_Mutation p.E75K 0.44 deleterious(0.01) probably_damaging(0.986) TCGA-QC-A7B5-01 22 36900239 36900239 G A FOXRED2 Missense_Mutation p.P319S 0.41 deleterious(0.04) benign(0.17) TCGA-QC-A7B5-01 22 37414344 37414344 C T TST Missense_Mutation p.E144K 0.33 tolerated(0.22) probably_damaging(0.993) TCGA-QC-A7B5-01 22 37466603 37466603 G A TMPRSS6 Missense_Mutation p.R597W 0.31 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 22 37524587 37524587 C T IL2RB Missense_Mutation p.G402E 0.52 tolerated(0.08) benign(0.095) TCGA-QC-A7B5-01 22 37886806 37886806 G A CARD10 3'UTR 0.42 TCGA-QC-A7B5-01 22 38203986 38203986 G A GCAT Silent p.G4G 0.37 TCGA-QC-A7B5-01 22 38617206 38617206 G C TMEM184B 3'UTR 0.33 TCGA-QC-A7B5-01 22 39219093 39219093 C T NPTXR Missense_Mutation p.E425K 0.24 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 22 39885980 39885980 G A MGAT3 3'UTR 0.32 TCGA-QC-A7B5-01 22 39909964 39909964 C T MIEF1 Missense_Mutation p.P343L 0.37 tolerated(0.25) benign(0.037) TCGA-QC-A7B5-01 22 39909965 39909965 C T MIEF1 Silent p.P343P 0.37 TCGA-QC-A7B5-01 22 40073417 40073417 G A CACNA1I Silent p.G1642G 0.33 TCGA-QC-A7B5-01 22 40075778 40075778 G A CACNA1I Missense_Mutation p.G1816R 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-QC-A7B5-01 22 40417551 40417551 G A FAM83F Missense_Mutation p.R346Q 0.33 tolerated(0.06) benign(0.033) TCGA-QC-A7B5-01 22 41513453 41513453 T A EP300 Missense_Mutation p.N119K 0.44 unknown(0) TCGA-QC-A7B5-01 22 41755867 41755867 C T ZC3H7B 3'UTR 0.39 TCGA-QC-A7B5-01 22 42018077 42018077 C T XRCC6 Silent p.N23N 0.40 TCGA-QC-A7B5-01 22 42205974 42205974 C T CCDC134 Silent p.I65I 0.34 TCGA-QC-A7B5-01 22 42536407 42536407 G A NDUFA6-AS1 3'Flank 0.27 TCGA-QC-A7B5-01 22 42607518 42607518 G A TCF20 Missense_Mutation p.P1265L 0.46 probably_damaging(0.999) TCGA-QC-A7B5-01 22 42610264 42610264 G A TCF20 Missense_Mutation p.P350S 0.23 benign(0.016) TCGA-QC-A7B5-01 22 43459916 43459916 C T TTLL1 Missense_Mutation p.G217E 0.44 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 22 43459917 43459917 C T TTLL1 Missense_Mutation p.G217R 0.45 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 22 43594538 43594538 G A SCUBE1 3'UTR 0.38 TCGA-QC-A7B5-01 22 43594539 43594539 G A SCUBE1 3'UTR 0.38 TCGA-QC-A7B5-01 22 44237720 44237720 C T SULT4A1 Missense_Mutation p.V88I 0.34 tolerated(0.14) benign(0.18) TCGA-QC-A7B5-01 22 44893483 44893483 A C LDOC1L 5'UTR 0.30 TCGA-QC-A7B5-01 22 46704373 46704373 G A GTSE1 Missense_Mutation p.V99M 0.38 deleterious(0) probably_damaging(0.96) TCGA-QC-A7B5-01 22 46787588 46787588 G A CELSR1 Silent p.G2030G 0.29 TCGA-QC-A7B5-01 22 46930172 46930172 G A CELSR1 Missense_Mutation p.L966F 0.31 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 22 50218032 50218032 G A BRD1 5'UTR 0.28 TCGA-QC-A7B5-01 22 50506973 50506973 C T MLC1 Silent p.L261L 0.20 TCGA-QC-A7B5-01 22 50691884 50691884 G A MAPK12 Silent p.S350S 0.34 TCGA-QC-A7B5-01 22 50717402 50717402 G A PLXNB2 Silent p.A1476A 0.17 TCGA-QC-A7B5-01 22 50878456 50878456 G T PPP6R2 Silent p.R758R 0.30 TCGA-QC-A7B5-01 22 51159801 51159801 C T SHANK3 Silent p.V1196V 0.40 TCGA-QC-A7B5-01 22 51159802 51159802 C T SHANK3 Missense_Mutation p.P1197S 0.40 benign(0.051) TCGA-QC-A7B5-01 2 102000094 102000094 G A CREG2 Missense_Mutation p.P171L 0.38 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 2 103040419 103040419 C T IL18RAP Silent p.F73F 0.12 TCGA-QC-A7B5-01 2 103343434 103343434 C T MFSD9 Splice_Site p.X100_splice 0.18 TCGA-QC-A7B5-01 2 105977652 105977652 G A FHL2 3'UTR 0.39 TCGA-QC-A7B5-01 2 10742991 10742991 T G NOL10 Missense_Mutation p.M415L 0.44 tolerated(0.38) benign(0.001) TCGA-QC-A7B5-01 2 108921994 108921994 C T SULT1C2 Missense_Mutation p.R252C 0.50 deleterious(0) benign(0.109) TCGA-QC-A7B5-01 2 112767593 112767593 G A MERTK Missense_Mutation p.G677R 0.47 deleterious(0.02) probably_damaging(1) TCGA-QC-A7B5-01 2 113888656 113888656 T A IL1RN Silent p.A83A 0.26 TCGA-QC-A7B5-01 2 113974914 113974914 C T PAX8 3'UTR 0.20 TCGA-QC-A7B5-01 2 114257069 114257069 C T FOXD4L1 Missense_Mutation p.P79L 0.23 tolerated(0.21) benign(0.004) TCGA-QC-A7B5-01 2 116599908 116599908 A G DPP10 Missense_Mutation p.E797G 0.38 deleterious(0.01) possibly_damaging(0.652) TCGA-QC-A7B5-01 2 11721013 11721013 C T GREB1 Intron 0.17 TCGA-QC-A7B5-01 2 11721014 11721014 C T GREB1 Intron 0.18 TCGA-QC-A7B5-01 2 119749371 119749371 G A MARCO Missense_Mutation p.G376E 0.21 deleterious(0) unknown(0) TCGA-QC-A7B5-01 2 119750716 119750716 C T MARCO Silent p.S423S 0.40 TCGA-QC-A7B5-01 2 120303806 120303806 G A PCDP1 Silent p.P33P 0.20 TCGA-QC-A7B5-01 2 121108550 121108550 G A INHBB 3'UTR 0.32 TCGA-QC-A7B5-01 2 121981345 121981345 C T TFCP2L1 3'UTR 0.27 TCGA-QC-A7B5-01 2 127957113 127957113 G T CYP27C1 Missense_Mutation p.Q131K 0.12 tolerated(1) benign(0.007) TCGA-QC-A7B5-01 2 128342362 128342362 C T MYO7B Missense_Mutation p.L522F 0.23 tolerated(0.08) benign(0.228) TCGA-QC-A7B5-01 2 128604345 128604345 G A POLR2D 3'UTR 0.32 TCGA-QC-A7B5-01 2 128620526 128620526 G A AMMECR1L 3'UTR 0.42 TCGA-QC-A7B5-01 2 128867235 128867235 G A UGGT1 Missense_Mutation p.G146R 0.41 deleterious(0.05) benign(0.005) TCGA-QC-A7B5-01 2 130869582 130869582 C T POTEF Silent p.L301L 0.52 TCGA-QC-A7B5-01 2 130900608 130900608 C T CCDC74B Intron 0.19 TCGA-QC-A7B5-01 2 132021885 132021885 G A POTEE Missense_Mutation p.E953K 0.10 deleterious_low_confidence(0.02) probably_damaging(0.989) TCGA-QC-A7B5-01 2 135744628 135744628 C T MAP3K19 Missense_Mutation p.R605Q 0.25 tolerated(0.51) benign(0.003) TCGA-QC-A7B5-01 2 135881809 135881809 C T RAB3GAP1 Missense_Mutation p.P275S 0.40 deleterious(0.03) possibly_damaging(0.725) TCGA-QC-A7B5-01 2 136418864 136418864 G A R3HDM1 Missense_Mutation p.G650S 0.30 tolerated(0.13) benign(0.005) TCGA-QC-A7B5-01 2 136418865 136418865 G A R3HDM1 Missense_Mutation p.G650D 0.30 deleterious(0) benign(0.185) TCGA-QC-A7B5-01 2 136545836 136545836 C T LCT 3'UTR 0.18 TCGA-QC-A7B5-01 2 137917851 137917851 C T THSD7B Missense_Mutation p.P480S 0.24 tolerated(0.12) possibly_damaging(0.803) TCGA-QC-A7B5-01 2 141214171 141214171 G A LRP1B Silent p.V3272V 0.26 TCGA-QC-A7B5-01 2 144525590 144525590 C T ARHGAP15 Missense_Mutation p.S426F 0.48 deleterious(0) probably_damaging(0.985) TCGA-QC-A7B5-01 2 152321624 152321624 C T RIF1 Missense_Mutation p.P1864S 0.49 tolerated_low_confidence(0.08) benign(0.018) TCGA-QC-A7B5-01 2 152381747 152381747 G A NEB Missense_Mutation p.S7401F 0.20 probably_damaging(1) TCGA-QC-A7B5-01 2 152512421 152512421 G A NEB Silent p.Y2204Y 0.45 TCGA-QC-A7B5-01 2 152521285 152521285 G A NEB Silent p.I1777I 0.44 TCGA-QC-A7B5-01 2 155098681 155098681 C T GALNT13 Silent p.V150V 0.18 TCGA-QC-A7B5-01 2 160175858 160175858 G A BAZ2B 3'UTR 0.16 TCGA-QC-A7B5-01 2 160811815 160811815 G A PLA2R1 Missense_Mutation p.L1066F 0.16 deleterious(0) probably_damaging(0.976) TCGA-QC-A7B5-01 2 162751303 162751303 C T SLC4A10 Nonsense_Mutation p.R437* 0.18 TCGA-QC-A7B5-01 2 163074579 163074579 T A FAP Missense_Mutation p.N227Y 0.52 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 2 163099915 163099915 G A FAP 5'UTR 0.14 TCGA-QC-A7B5-01 2 163253266 163253266 C T KCNH7 Missense_Mutation p.R866K 0.28 deleterious(0.01) probably_damaging(0.936) TCGA-QC-A7B5-01 2 166848835 166848835 G A SCN1A Silent p.I1650I 0.27 TCGA-QC-A7B5-01 2 168099236 168099236 C T XIRP2 Missense_Mutation p.S445F 0.32 benign(0.145) TCGA-QC-A7B5-01 2 168103070 168103070 C T XIRP2 Missense_Mutation p.S1723F 0.39 benign(0.386) TCGA-QC-A7B5-01 2 168103768 168103768 T A XIRP2 Missense_Mutation p.S1956T 0.33 benign(0.037) TCGA-QC-A7B5-01 2 168105380 168105380 C T XIRP2 Missense_Mutation p.S2493F 0.32 benign(0.079) TCGA-QC-A7B5-01 2 168105914 168105914 C T XIRP2 Missense_Mutation p.S2671L 0.42 benign(0.02) TCGA-QC-A7B5-01 2 168106081 168106081 C T XIRP2 Missense_Mutation p.H2727Y 0.17 benign(0.408) TCGA-QC-A7B5-01 2 170050305 170050305 C T LRP2 Silent p.G2932G 0.13 TCGA-QC-A7B5-01 2 170403114 170403114 T C FASTKD1 Missense_Mutation p.I439V 0.45 tolerated(0.61) benign(0.015) TCGA-QC-A7B5-01 2 171319908 171319908 G T MYO3B Nonsense_Mutation p.E921* 0.31 TCGA-QC-A7B5-01 2 171939308 171939308 T C TLK1 Missense_Mutation p.S105G 0.48 deleterious(0.04) probably_damaging(0.998) TCGA-QC-A7B5-01 2 174223548 174223548 G A CDCA7 Missense_Mutation p.D44N 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-QC-A7B5-01 2 177054551 177054551 A G HOXD1 Missense_Mutation p.Y223C 0.50 deleterious(0.01) benign(0.045) TCGA-QC-A7B5-01 2 17830793 17830793 C T VSNL1 Silent p.S93S 0.33 TCGA-QC-A7B5-01 2 178491270 178491270 C T PDE11A 3'UTR 0.34 TCGA-QC-A7B5-01 2 179403616 179403616 A C TTN Intron 0.25 TCGA-QC-A7B5-01 2 179452029 179452029 C T TTN Silent p.V21303V 0.17 TCGA-QC-A7B5-01 2 179463272 179463272 G A TTN Silent p.I19024I 0.44 TCGA-QC-A7B5-01 2 179466063 179466063 C T TTN Missense_Mutation p.R18554Q 0.16 TCGA-QC-A7B5-01 2 179498051 179498051 G A TTN Nonsense_Mutation p.R14317* 0.17 TCGA-QC-A7B5-01 2 179584942 179584942 C T TTN Silent p.G7809G 0.22 TCGA-QC-A7B5-01 2 179606002 179606002 G A TTN Silent p.I3986I 0.17 TCGA-QC-A7B5-01 2 179606139 179606139 G A TTN Missense_Mutation p.L3941F 0.27 TCGA-QC-A7B5-01 2 179615141 179615141 C T TTN Intron 0.41 TCGA-QC-A7B5-01 2 179637996 179637996 C T TTN Nonsense_Mutation p.W2565* 0.18 TCGA-QC-A7B5-01 2 179638990 179638990 C A TTN Missense_Mutation p.G2334V 0.41 TCGA-QC-A7B5-01 2 179638991 179638991 C T TTN Missense_Mutation p.G2334R 0.43 TCGA-QC-A7B5-01 2 179742589 179742589 G A CCDC141 Intron 0.22 TCGA-QC-A7B5-01 2 179977557 179977557 G A SESTD1 Missense_Mutation p.P619S 0.16 tolerated(0.54) benign(0.098) TCGA-QC-A7B5-01 2 18112493 18112493 C T KCNS3 Missense_Mutation p.P73L 0.25 deleterious(0) probably_damaging(0.92) TCGA-QC-A7B5-01 2 186672991 186672991 G A FSIP2 Missense_Mutation p.E6409K 0.21 benign(0.305) TCGA-QC-A7B5-01 2 186673773 186673773 C A FSIP2 Silent p.S6669S 0.25 TCGA-QC-A7B5-01 2 189342386 189342386 G A GULP1 Intron 0.32 TCGA-QC-A7B5-01 2 189599665 189599665 C T DIRC1 5'UTR 0.23 TCGA-QC-A7B5-01 2 190924815 190924815 G A MSTN Silent p.T240T 0.11 TCGA-QC-A7B5-01 2 191227390 191227390 C T INPP1 Missense_Mutation p.S81F 0.22 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 2 191919251 191919251 C T STAT4 Missense_Mutation p.E406K 0.19 deleterious(0) probably_damaging(0.922) TCGA-QC-A7B5-01 2 191919252 191919252 C T STAT4 Silent p.K405K 0.20 TCGA-QC-A7B5-01 2 192815018 192815018 A T TMEFF2 3'UTR 0.12 TCGA-QC-A7B5-01 2 196865575 196865575 G A DNAH7 Silent p.F402F 0.21 TCGA-QC-A7B5-01 2 197122601 197122601 C T HECW2 Missense_Mutation p.G1122E 0.21 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 2 197183519 197183519 C T HECW2 Missense_Mutation p.E699K 0.42 tolerated_low_confidence(0.3) benign(0.006) TCGA-QC-A7B5-01 2 201515794 201515794 C T AOX1 Missense_Mutation p.A982V 0.47 tolerated(0.09) benign(0.033) TCGA-QC-A7B5-01 2 201676618 201676618 C T BZW1 5'Flank 0.31 TCGA-QC-A7B5-01 2 203384915 203384915 C T BMPR2 Missense_Mutation p.P320S 0.19 tolerated(0.4) benign(0.135) TCGA-QC-A7B5-01 2 204737573 204737573 C T CTLA4 3'UTR 0.13 TCGA-QC-A7B5-01 2 206921091 206921091 G A INO80D Silent p.P265P 0.25 TCGA-QC-A7B5-01 2 207621643 207621643 G A MDH1B Missense_Mutation p.P131L 0.46 deleterious(0) benign(0.266) TCGA-QC-A7B5-01 2 20823732 20823732 G A HS1BP3 Silent p.L282L 0.30 TCGA-QC-A7B5-01 2 20823733 20823733 G A HS1BP3 Silent p.L281L 0.30 TCGA-QC-A7B5-01 2 208441446 208441446 C T CREB1 Intron 0.21 TCGA-QC-A7B5-01 2 208795658 208795658 G A PLEKHM3 Silent p.L626L 0.19 TCGA-QC-A7B5-01 2 20939875 20939875 G A C2orf43 Nonsense_Mutation p.R187* 0.39 TCGA-QC-A7B5-01 2 210574734 210574734 C T MAP2 Missense_Mutation p.S1610F 0.26 deleterious(0) probably_damaging(0.99) TCGA-QC-A7B5-01 2 21233941 21233941 C T APOB Silent p.L1933L 0.35 TCGA-QC-A7B5-01 2 21235215 21235215 G A APOB Missense_Mutation p.P1509S 0.31 benign(0.005) TCGA-QC-A7B5-01 2 21245744 21245744 G A APOB Silent p.I925I 0.11 TCGA-QC-A7B5-01 2 213871322 213871322 C T IKZF2 3'UTR 0.22 TCGA-QC-A7B5-01 2 213878518 213878518 C T IKZF2 Missense_Mutation p.V285M 0.16 deleterious(0.01) probably_damaging(0.945) TCGA-QC-A7B5-01 2 216225880 216225880 G A FN1 3'UTR 0.16 TCGA-QC-A7B5-01 2 218682868 218682868 A T TNS1 Missense_Mutation p.I1292K 0.50 tolerated(0.23) benign(0.024) TCGA-QC-A7B5-01 2 219001272 219001272 G A CXCR2 3'UTR 0.19 TCGA-QC-A7B5-01 2 219210994 219210994 C T PNKD 3'UTR 0.21 TCGA-QC-A7B5-01 2 219319433 219319433 G A USP37 3'UTR 0.23 TCGA-QC-A7B5-01 2 219360517 219360517 C T USP37 Missense_Mutation p.E480K 0.11 deleterious(0) benign(0.247) TCGA-QC-A7B5-01 2 219360518 219360518 C T USP37 Silent p.L479L 0.12 TCGA-QC-A7B5-01 2 219496999 219496999 C T PLCD4 Silent p.P471P 0.40 TCGA-QC-A7B5-01 2 219526215 219526215 C T BCS1L Missense_Mutation p.T136I 0.27 deleterious(0.01) benign(0.108) TCGA-QC-A7B5-01 2 219526216 219526216 C T BCS1L Silent p.T136T 0.27 TCGA-QC-A7B5-01 2 219677814 219677814 G A CYP27A1 Missense_Mutation p.D338N 0.32 deleterious(0.01) probably_damaging(0.986) TCGA-QC-A7B5-01 2 219870876 219870876 C T CCDC108 Missense_Mutation p.E1597K 0.32 tolerated(0.32) benign(0.03) TCGA-QC-A7B5-01 2 219883821 219883821 G A CCDC108 Missense_Mutation p.S1185F 0.12 deleterious(0.03) possibly_damaging(0.82) TCGA-QC-A7B5-01 2 219892042 219892042 G A CCDC108 Intron 0.30 TCGA-QC-A7B5-01 2 220033797 220033797 C T SLC23A3 Missense_Mutation p.G157E 0.25 tolerated(0.34) benign(0.073) TCGA-QC-A7B5-01 2 220047690 220047690 C T FAM134A 3'UTR 0.22 TCGA-QC-A7B5-01 2 220136223 220136223 C T TUBA4B RNA 0.47 TCGA-QC-A7B5-01 2 220164892 220164892 G A PTPRN Silent p.T417T 0.17 TCGA-QC-A7B5-01 2 220246114 220246114 G A DNPEP Silent p.N394N 0.39 TCGA-QC-A7B5-01 2 220333750 220333750 G A SPEG Silent p.R1157R 0.45 TCGA-QC-A7B5-01 2 222321413 222321413 G A EPHA4 Missense_Mutation p.S508F 0.15 tolerated(0.58) benign(0.383) TCGA-QC-A7B5-01 2 225449666 225449666 A G CUL3 Missense_Mutation p.F21L 0.29 deleterious(0) benign(0.327) TCGA-QC-A7B5-01 2 226447297 226447297 C G NYAP2 Silent p.P388P 0.39 TCGA-QC-A7B5-01 2 227892684 227892684 G A COL4A4 Missense_Mutation p.P1339S 0.18 unknown(0) TCGA-QC-A7B5-01 2 228104874 228104874 C T COL4A3 Missense_Mutation p.P54S 0.34 probably_damaging(0.993) TCGA-QC-A7B5-01 2 228104875 228104875 C T COL4A3 Missense_Mutation p.P54L 0.33 probably_damaging(0.995) TCGA-QC-A7B5-01 2 228118052 228118052 G A COL4A3 Missense_Mutation p.R229Q 0.34 benign(0.059) TCGA-QC-A7B5-01 2 228563864 228563864 G A SLC19A3 Silent p.F189F 0.25 TCGA-QC-A7B5-01 2 228788729 228788729 C T DAW1 3'UTR 0.18 TCGA-QC-A7B5-01 2 228846385 228846385 C T SPHKAP 3'UTR 0.27 TCGA-QC-A7B5-01 2 229890759 229890759 T G PID1 Silent p.P112P 0.19 TCGA-QC-A7B5-01 2 230723648 230723648 C T TRIP12 Silent p.R247R 0.41 TCGA-QC-A7B5-01 2 233320961 233320961 C G ALPI Missense_Mutation p.L18V 0.45 tolerated(0.4) benign(0.231) TCGA-QC-A7B5-01 2 233345431 233345431 G A ECEL1 Silent p.A716A 0.54 TCGA-QC-A7B5-01 2 233399932 233399932 C T CHRND Silent p.I488I 0.10 TCGA-QC-A7B5-01 2 233410306 233410306 G A CHRNG Silent p.L478L 0.13 TCGA-QC-A7B5-01 2 233410307 233410307 G A CHRNG Missense_Mutation p.A479T 0.14 tolerated(0.07) possibly_damaging(0.482) TCGA-QC-A7B5-01 2 233633287 233633287 C T KCNJ13 Missense_Mutation p.E233K 0.39 deleterious(0.02) possibly_damaging(0.887) TCGA-QC-A7B5-01 2 234651542 234651542 A - UGT1A10 Intron 0.14 TCGA-QC-A7B5-01 2 234750475 234750475 C T HJURP Silent p.Q317Q 0.18 TCGA-QC-A7B5-01 2 234891740 234891740 T G TRPM8 Missense_Mutation p.M878R 0.20 deleterious(0) possibly_damaging(0.756) TCGA-QC-A7B5-01 2 234915549 234915549 A T TRPM8 Missense_Mutation p.E1061D 0.35 tolerated(0.3) probably_damaging(0.984) TCGA-QC-A7B5-01 2 239049493 239049493 C T KLHL30 Missense_Mutation p.A33V 0.15 tolerated(0.34) benign(0.047) TCGA-QC-A7B5-01 2 239049494 239049494 C T KLHL30 Silent p.A33A 0.14 TCGA-QC-A7B5-01 2 241078551 241078551 C T OTOS 3'UTR 0.34 TCGA-QC-A7B5-01 2 241078552 241078552 C A OTOS 3'UTR 0.35 TCGA-QC-A7B5-01 2 241659270 241659270 G A KIF1A Missense_Mutation p.P1648S 0.31 tolerated(0.31) possibly_damaging(0.628) TCGA-QC-A7B5-01 2 241696866 241696866 C T KIF1A Missense_Mutation p.E910K 0.22 tolerated(0.17) benign(0.015) TCGA-QC-A7B5-01 2 241710470 241710470 G A KIF1A Missense_Mutation p.S420F 0.33 deleterious(0.01) possibly_damaging(0.805) TCGA-QC-A7B5-01 2 242002276 242002276 C T SNED1 Silent p.L776L 0.19 TCGA-QC-A7B5-01 2 242142872 242142872 G A ANO7 Missense_Mutation p.R337K 0.23 tolerated(0.63) benign(0.021) TCGA-QC-A7B5-01 2 242168891 242168891 C T HDLBP 3'UTR 0.42 TCGA-QC-A7B5-01 2 24245354 24245354 G T MFSD2B Missense_Mutation p.D316Y 0.35 deleterious(0.03) benign(0.214) TCGA-QC-A7B5-01 2 24262260 24262260 G A C2orf44 Silent p.V35V 0.32 TCGA-QC-A7B5-01 2 24930035 24930035 T G NCOA1 Missense_Mutation p.S566A 0.38 tolerated(0.45) benign(0.015) TCGA-QC-A7B5-01 2 25095477 25095477 C T ADCY3 Missense_Mutation p.E263K 0.28 tolerated(0.05) possibly_damaging(0.61) TCGA-QC-A7B5-01 2 26697461 26697461 G A OTOF Missense_Mutation p.P1070S 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 2 27169974 27169974 G A DPYSL5 3'UTR 0.44 TCGA-QC-A7B5-01 2 27169975 27169975 G A DPYSL5 3'UTR 0.46 TCGA-QC-A7B5-01 2 27354288 27354288 G A PREB Silent p.F416F 0.37 TCGA-QC-A7B5-01 2 27434899 27434899 G A SLC5A6 5'UTR 0.45 TCGA-QC-A7B5-01 2 27480070 27480070 G A SLC30A3 Silent p.L243L 0.16 TCGA-QC-A7B5-01 2 27684264 27684264 G A IFT172 Missense_Mutation p.L772F 0.35 tolerated(0.06) benign(0.386) TCGA-QC-A7B5-01 2 27840415 27840415 C T ZNF512 Missense_Mutation p.H458Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-QC-A7B5-01 2 28771420 28771420 C T PLB1 Intron 0.32 TCGA-QC-A7B5-01 2 28771421 28771421 C T PLB1 Intron 0.32 TCGA-QC-A7B5-01 2 29294163 29294163 G A C2orf71 Missense_Mutation p.P989S 0.27 tolerated(0.31) benign(0.043) TCGA-QC-A7B5-01 2 29294164 29294164 G A C2orf71 Silent p.P988P 0.28 TCGA-QC-A7B5-01 2 29295748 29295748 C T C2orf71 Silent p.G460G 0.28 TCGA-QC-A7B5-01 2 31133826 31133826 C A GALNT14 Missense_Mutation p.V539F 0.16 deleterious(0.01) probably_damaging(1) TCGA-QC-A7B5-01 2 31133827 31133827 G A GALNT14 Silent p.I538I 0.16 TCGA-QC-A7B5-01 2 31416087 31416087 G A CAPN14 Nonsense_Mutation p.Q342* 0.18 TCGA-QC-A7B5-01 2 3193006 3193006 C T TSSC1 3'UTR 0.28 TCGA-QC-A7B5-01 2 3193007 3193007 C T TSSC1 3'UTR 0.29 TCGA-QC-A7B5-01 2 32774387 32774387 C T BIRC6 Missense_Mutation p.A4328V 0.28 probably_damaging(0.993) TCGA-QC-A7B5-01 2 32774388 32774388 C T BIRC6 Silent p.A4328A 0.27 TCGA-QC-A7B5-01 2 32843091 32843091 C T BIRC6 3'UTR 0.25 TCGA-QC-A7B5-01 2 33335687 33335687 A T LTBP1 Missense_Mutation p.H301L 0.16 deleterious(0.03) benign(0.044) TCGA-QC-A7B5-01 2 33359995 33359995 C T LTBP1 Missense_Mutation p.A390V 0.26 deleterious(0.01) possibly_damaging(0.735) TCGA-QC-A7B5-01 2 33359996 33359996 C T LTBP1 Silent p.A390A 0.30 TCGA-QC-A7B5-01 2 37455747 37455747 G A CEBPZ Nonsense_Mutation p.Q197* 0.23 TCGA-QC-A7B5-01 2 37455748 37455748 G A CEBPZ Silent p.P196P 0.28 TCGA-QC-A7B5-01 2 39414784 39414784 G A CDKL4 Missense_Mutation p.P240L 0.49 deleterious(0) probably_damaging(0.978) TCGA-QC-A7B5-01 2 40657359 40657359 A T SLC8A1 Missense_Mutation p.V21D 0.40 deleterious_low_confidence(0.01) benign(0.009) TCGA-QC-A7B5-01 2 40657360 40657360 C T SLC8A1 Missense_Mutation p.V21I 0.40 tolerated_low_confidence(0.72) benign(0.005) TCGA-QC-A7B5-01 2 42281194 42281194 C T PKDCC Missense_Mutation p.R261C 0.32 deleterious(0) probably_damaging(0.993) TCGA-QC-A7B5-01 2 44019947 44019947 C T DYNC2LI1 Intron 0.19 TCGA-QC-A7B5-01 2 44175568 44175568 G A LRPPRC Missense_Mutation p.H609Y 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-QC-A7B5-01 2 44513183 44513183 G A SLC3A1 Missense_Mutation p.G260R 0.23 deleterious(0) probably_damaging(0.979) TCGA-QC-A7B5-01 2 45780861 45780861 G C SRBD1 Missense_Mutation p.P473R 0.18 tolerated(0.08) possibly_damaging(0.873) TCGA-QC-A7B5-01 2 45780862 45780862 G A SRBD1 Missense_Mutation p.P473S 0.19 tolerated(0.14) benign(0.403) TCGA-QC-A7B5-01 2 46231735 46231735 G A PRKCE Missense_Mutation p.E341K 0.31 tolerated(1) benign(0.002) TCGA-QC-A7B5-01 2 48807731 48807731 A G STON1-GTF2A1L 5'UTR 0.37 TCGA-QC-A7B5-01 2 48808301 48808301 C T STON1-GTF2A1L Nonsense_Mutation p.R177* 0.46 TCGA-QC-A7B5-01 2 50149298 50149298 C T NRXN1 Silent p.G1476G 0.41 TCGA-QC-A7B5-01 2 54856752 54856752 C T SPTBN1 Silent p.I827I 0.38 TCGA-QC-A7B5-01 2 56613140 56613140 C A CCDC85A 3'UTR 0.36 TCGA-QC-A7B5-01 2 5834211 5834211 G A SOX11 3'UTR 0.11 TCGA-QC-A7B5-01 2 5838251 5838251 G A SOX11 3'UTR 0.41 TCGA-QC-A7B5-01 2 60685452 60685452 A G BCL11A 3'UTR 0.21 TCGA-QC-A7B5-01 2 60685453 60685453 T A BCL11A 3'UTR 0.21 TCGA-QC-A7B5-01 2 60687935 60687935 C T BCL11A Silent p.G704G 0.25 TCGA-QC-A7B5-01 2 62373527 62373527 G T AC018462.2 RNA 0.31 TCGA-QC-A7B5-01 2 62449515 62449515 C T B3GNT2 Missense_Mutation p.P54S 0.16 tolerated(0.68) benign(0.097) TCGA-QC-A7B5-01 2 62934248 62934248 C T EHBP1 5'UTR 0.40 TCGA-QC-A7B5-01 2 62934249 62934249 C T EHBP1 5'UTR 0.40 TCGA-QC-A7B5-01 2 65301556 65301556 C T CEP68 Intron 0.34 TCGA-QC-A7B5-01 2 68406172 68406172 C T PPP3R1 3'UTR 0.34 TCGA-QC-A7B5-01 2 69692996 69692996 C T AAK1 3'Flank 0.15 TCGA-QC-A7B5-01 2 6991588 6991588 G A CMPK2 Missense_Mutation p.R407C 0.23 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 2 71062847 71062847 G A CD207 Silent p.S20S 0.23 TCGA-QC-A7B5-01 2 7179916 7179916 C T RNF144A 3'UTR 0.28 TCGA-QC-A7B5-01 2 72692418 72692418 C T EXOC6B Silent p.K617K 0.26 TCGA-QC-A7B5-01 2 72692419 72692419 T C EXOC6B Missense_Mutation p.K617R 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-QC-A7B5-01 2 73118669 73118669 C T SPR 3'UTR 0.36 TCGA-QC-A7B5-01 2 73681154 73681154 C T ALMS1 Silent p.L2499L 0.43 TCGA-QC-A7B5-01 2 74315101 74315101 G A TET3 Missense_Mutation p.E807K 0.39 deleterious(0) probably_damaging(0.979) TCGA-QC-A7B5-01 2 74326476 74326476 C T TET3 Missense_Mutation p.P979L 0.20 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 2 74596233 74596233 G A DCTN1 Missense_Mutation p.H565Y 0.35 tolerated(0.7) benign(0.013) TCGA-QC-A7B5-01 2 74644829 74644829 G A C2orf81 5'UTR 0.30 TCGA-QC-A7B5-01 2 74702755 74702755 C T CCDC142 Silent p.R527R 0.19 TCGA-QC-A7B5-01 2 74751082 74751082 C T DQX1 Missense_Mutation p.G262R 0.14 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 2 74808946 74808946 G A M1AP Silent p.D208D 0.35 TCGA-QC-A7B5-01 2 75879778 75879778 G C MRPL19 Missense_Mutation p.G157A 0.29 deleterious(0.03) possibly_damaging(0.845) TCGA-QC-A7B5-01 2 80529335 80529335 G A LRRTM1 3'UTR 0.31 TCGA-QC-A7B5-01 2 80783008 80783008 T A CTNNA2 Silent p.L577L 0.37 TCGA-QC-A7B5-01 2 80875620 80875620 T G CTNNA2 3'UTR 0.32 TCGA-QC-A7B5-01 2 8108350 8108350 C T LINC00298 RNA 0.34 TCGA-QC-A7B5-01 2 8108351 8108351 C T LINC00298 RNA 0.34 TCGA-QC-A7B5-01 2 84831570 84831570 C T DNAH6 Silent p.T992T 0.22 TCGA-QC-A7B5-01 2 86443684 86443684 C T REEP1 3'UTR 0.53 TCGA-QC-A7B5-01 2 86693706 86693706 C T KDM3A Missense_Mutation p.P407S 0.34 tolerated_low_confidence(0.64) benign(0) TCGA-QC-A7B5-01 2 86693707 86693707 C T KDM3A Missense_Mutation p.P407L 0.33 tolerated_low_confidence(0.55) benign(0) TCGA-QC-A7B5-01 2 86998741 86998741 C T RMND5A Missense_Mutation p.R340C 0.17 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 2 89339830 89339830 G A IGKV1-12 Missense_Mutation p.P81L 0.14 deleterious(0) possibly_damaging(0.764) TCGA-QC-A7B5-01 2 95601090 95601090 C T AC097374.2 RNA 0.34 TCGA-QC-A7B5-01 2 95940496 95940496 C T PROM2 Missense_Mutation p.R55C 0.27 deleterious(0.01) probably_damaging(0.961) TCGA-QC-A7B5-01 2 96259841 96259841 G A TRIM43 Missense_Mutation p.D24N 0.13 deleterious(0.03) probably_damaging(0.957) TCGA-QC-A7B5-01 2 96958812 96958812 T A SNRNP200 Missense_Mutation p.E686D 0.36 tolerated(0.1) possibly_damaging(0.885) TCGA-QC-A7B5-01 2 97463353 97463353 C T CNNM4 Silent p.L550L 0.45 TCGA-QC-A7B5-01 2 97506580 97506580 C T ANKRD23 Missense_Mutation p.E124K 0.29 tolerated(0.1) possibly_damaging(0.859) TCGA-QC-A7B5-01 2 98351000 98351000 G A ZAP70 Missense_Mutation p.D303N 0.37 tolerated(0.43) benign(0.017) TCGA-QC-A7B5-01 2 98804437 98804437 G A VWA3B Splice_Site p.X438_splice 0.32 TCGA-QC-A7B5-01 2 99410740 99410740 C T KIAA1211L 3'UTR 0.15 TCGA-QC-A7B5-01 3 100373989 100373989 C T GPR128 Missense_Mutation p.R564W 0.42 deleterious(0.02) possibly_damaging(0.806) TCGA-QC-A7B5-01 3 100470480 100470480 C T ABI3BP Missense_Mutation p.E1010K 0.42 deleterious(0.01) possibly_damaging(0.899) TCGA-QC-A7B5-01 3 100489667 100489667 T C ABI3BP Missense_Mutation p.N843S 0.39 deleterious(0) probably_damaging(0.973) TCGA-QC-A7B5-01 3 101312033 101312033 G A PCNP 3'UTR 0.35 TCGA-QC-A7B5-01 3 101375072 101375072 G A ZBTB11 Silent p.I689I 0.22 TCGA-QC-A7B5-01 3 10322248 10322248 G A TATDN2 3'UTR 0.41 TCGA-QC-A7B5-01 3 10491104 10491104 C T ATP2B2 Missense_Mutation p.A42T 0.33 deleterious(0.02) benign(0.405) TCGA-QC-A7B5-01 3 108074095 108074095 G A HHLA2 Missense_Mutation p.M184I 0.28 tolerated(0.51) benign(0.003) TCGA-QC-A7B5-01 3 108107885 108107885 G A MYH15 Missense_Mutation p.R1843C 0.34 deleterious(0.01) probably_damaging(0.94) TCGA-QC-A7B5-01 3 108474705 108474705 C T RETNLB Missense_Mutation p.D86N 0.25 tolerated(0.16) possibly_damaging(0.454) TCGA-QC-A7B5-01 3 108672518 108672518 G A GUCA1C Missense_Mutation p.P31L 0.28 deleterious(0) probably_damaging(0.997) TCGA-QC-A7B5-01 3 109027921 109027921 G A DPPA2 Silent p.I116I 0.23 TCGA-QC-A7B5-01 3 111603786 111603786 G A PHLDB2 Missense_Mutation p.E288K 0.31 tolerated(0.16) benign(0.066) TCGA-QC-A7B5-01 3 111604149 111604149 C A PHLDB2 Missense_Mutation p.L409I 0.35 tolerated(0.17) benign(0.029) TCGA-QC-A7B5-01 3 111604348 111604348 G A PHLDB2 Intron 0.29 TCGA-QC-A7B5-01 3 112198324 112198324 G C BTLA Missense_Mutation p.H127Q 0.22 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 3 11304585 11304585 C T HRH1 3'UTR 0.54 TCGA-QC-A7B5-01 3 113679598 113679598 C T ZDHHC23 3'UTR 0.30 TCGA-QC-A7B5-01 3 114057587 114057587 G A ZBTB20 3'UTR 0.31 TCGA-QC-A7B5-01 3 114069530 114069530 G A ZBTB20 Silent p.S465S 0.24 TCGA-QC-A7B5-01 3 11597816 11597816 G A ATG7 3'UTR 0.40 TCGA-QC-A7B5-01 3 118866202 118866202 G A C3orf30 Missense_Mutation p.R389K 0.51 deleterious(0.05) benign(0.142) TCGA-QC-A7B5-01 3 119120885 119120885 C T ARHGAP31 Missense_Mutation p.P429L 0.21 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 3 119133768 119133768 G A ARHGAP31 Missense_Mutation p.G998R 0.40 tolerated(0.13) benign(0.033) TCGA-QC-A7B5-01 3 119530564 119530564 G A NR1I2 Silent p.K209K 0.46 TCGA-QC-A7B5-01 3 119886958 119886958 G A GPR156 Missense_Mutation p.L456F 0.17 tolerated(0.25) benign(0.033) TCGA-QC-A7B5-01 3 120408645 120408645 C T RABL3 3'UTR 0.42 TCGA-QC-A7B5-01 3 120840490 120840490 C T STXBP5L Missense_Mutation p.S203F 0.32 deleterious(0) possibly_damaging(0.904) TCGA-QC-A7B5-01 3 120840491 120840491 C T STXBP5L Silent p.S203S 0.32 TCGA-QC-A7B5-01 3 121207015 121207015 G A POLQ Missense_Mutation p.P1588L 0.17 tolerated(0.7) benign(0) TCGA-QC-A7B5-01 3 121207016 121207016 G A POLQ Missense_Mutation p.P1588S 0.17 tolerated(0.47) benign(0.087) TCGA-QC-A7B5-01 3 121207022 121207022 C A POLQ Missense_Mutation p.V1586L 0.17 tolerated(0.26) benign(0.004) TCGA-QC-A7B5-01 3 121411130 121411130 A T GOLGB1 Missense_Mutation p.Y2361N 0.31 possibly_damaging(0.844) TCGA-QC-A7B5-01 3 122145611 122145611 G A KPNA1 3'UTR 0.31 TCGA-QC-A7B5-01 3 122990599 122990599 T C SEC22A 3'UTR 0.41 TCGA-QC-A7B5-01 3 122990808 122990808 A C SEC22A 3'UTR 0.35 TCGA-QC-A7B5-01 3 123401113 123401113 G A MYLK Missense_Mutation p.R1204W 0.23 deleterious(0) possibly_damaging(0.681) TCGA-QC-A7B5-01 3 124044928 124044928 G A KALRN Silent p.L396L 0.35 TCGA-QC-A7B5-01 3 124351509 124351509 C T KALRN Missense_Mutation p.P110S 0.14 tolerated(0.18) benign(0.392) TCGA-QC-A7B5-01 3 124351510 124351510 C T KALRN Missense_Mutation p.P110L 0.13 tolerated(0.14) benign(0.392) TCGA-QC-A7B5-01 3 124839624 124839624 C T SLC12A8 Intron 0.29 TCGA-QC-A7B5-01 3 125248988 125248988 T A OSBPL11 3'UTR 0.40 TCGA-QC-A7B5-01 3 126386106 126386106 C T NUP210P1 RNA 0.36 TCGA-QC-A7B5-01 3 126452005 126452005 G A CHCHD6 Silent p.K117K 0.36 TCGA-QC-A7B5-01 3 127396057 127396057 C T ABTB1 Silent p.P230P 0.24 TCGA-QC-A7B5-01 3 127454744 127454744 G A MGLL Intron 0.25 TCGA-QC-A7B5-01 3 127642907 127642907 A T KBTBD12 Missense_Mutation p.I335F 0.39 tolerated(0.28) benign(0.305) TCGA-QC-A7B5-01 3 127981041 127981041 C T EEFSEC Missense_Mutation p.P199S 0.33 tolerated(0.13) benign(0.17) TCGA-QC-A7B5-01 3 127981042 127981042 C T EEFSEC Missense_Mutation p.P199L 0.31 deleterious(0.01) possibly_damaging(0.876) TCGA-QC-A7B5-01 3 127981053 127981053 C T EEFSEC Missense_Mutation p.P203S 0.40 tolerated(0.86) benign(0.002) TCGA-QC-A7B5-01 3 128181649 128181649 G A DNAJB8 Missense_Mutation p.A147V 0.17 tolerated(0.07) probably_damaging(0.985) TCGA-QC-A7B5-01 3 128292214 128292214 G A C3orf27 Missense_Mutation p.S120F 0.42 benign(0.045) TCGA-QC-A7B5-01 3 128338912 128338912 G A RPN1 3'UTR 0.33 TCGA-QC-A7B5-01 3 12858604 12858604 C T CAND2 Nonsense_Mutation p.Q725* 0.41 TCGA-QC-A7B5-01 3 12858728 12858728 G A CAND2 Missense_Mutation p.G766E 0.50 tolerated(0.97) possibly_damaging(0.772) TCGA-QC-A7B5-01 3 128629615 128629615 C T ACAD9 Missense_Mutation p.A575V 0.36 deleterious(0) benign(0.244) TCGA-QC-A7B5-01 3 128879960 128879960 G A ISY1 5'Flank 0.37 TCGA-QC-A7B5-01 3 128879961 128879961 G A ISY1 5'Flank 0.38 TCGA-QC-A7B5-01 3 129274123 129274123 C T PLXND1 3'UTR 0.31 TCGA-QC-A7B5-01 3 129696070 129696070 C T TRH 3'UTR 0.27 TCGA-QC-A7B5-01 3 130287341 130287341 T G COL6A6 Missense_Mutation p.L765R 0.41 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 3 131261456 131261456 C T CPNE4 Missense_Mutation p.G495E 0.38 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 3 131261457 131261457 C T CPNE4 Missense_Mutation p.G495R 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 3 132358400 132358400 T C ACAD11 Missense_Mutation p.D213G 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-QC-A7B5-01 3 133099029 133099029 C T TMEM108 Silent p.P158P 0.35 TCGA-QC-A7B5-01 3 134322372 134322372 G A KY 3'UTR 0.44 TCGA-QC-A7B5-01 3 135869605 135869605 A T MSL2 3'UTR 0.34 TCGA-QC-A7B5-01 3 136701039 136701039 C T IL20RB Missense_Mutation p.P85S 0.10 deleterious(0.02) possibly_damaging(0.771) TCGA-QC-A7B5-01 3 137790632 137790632 G A DZIP1L Silent p.L490L 0.39 TCGA-QC-A7B5-01 3 137907358 137907358 C T ARMC8 5'UTR 0.37 TCGA-QC-A7B5-01 3 138219583 138219583 C T CEP70 Silent p.K454K 0.38 TCGA-QC-A7B5-01 3 138724344 138724344 G A PRR23A Missense_Mutation p.P256L 0.21 tolerated(0.45) unknown(0) TCGA-QC-A7B5-01 3 139079946 139079946 G - COPB2 Frame_Shift_Del p.F729Lfs*2 0.22 TCGA-QC-A7B5-01 3 140178487 140178487 C T CLSTN2 Silent p.V366V 0.35 TCGA-QC-A7B5-01 3 140178488 140178488 C T CLSTN2 Missense_Mutation p.P367S 0.35 deleterious(0.03) probably_damaging(0.971) TCGA-QC-A7B5-01 3 140401662 140401662 G A TRIM42 Missense_Mutation p.G234R 0.29 tolerated(0.66) benign(0.061) TCGA-QC-A7B5-01 3 140401663 140401663 G A TRIM42 Missense_Mutation p.G234E 0.29 tolerated(0.94) benign(0.391) TCGA-QC-A7B5-01 3 140660753 140660753 G C SLC25A36 5'UTR 0.30 TCGA-QC-A7B5-01 3 140866004 140866004 G A SPSB4 Missense_Mutation p.D239N 0.28 tolerated(0.06) benign(0.085) TCGA-QC-A7B5-01 3 141011754 141011754 C T ACPL2 Missense_Mutation p.P384S 0.35 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 3 14154081 14154081 G A CHCHD4 3'UTR 0.27 TCGA-QC-A7B5-01 3 141923410 141923410 G A GK5 Intron 0.33 TCGA-QC-A7B5-01 3 142030041 142030041 G A XRN1 3'UTR 0.40 TCGA-QC-A7B5-01 3 142431664 142431664 C G PLS1 3'UTR 0.27 TCGA-QC-A7B5-01 3 14745900 14745900 G A C3orf20 Missense_Mutation p.R312Q 0.09 tolerated(0.06) probably_damaging(0.989) TCGA-QC-A7B5-01 3 14813645 14813645 G A C3orf20 Missense_Mutation p.G856E 0.13 tolerated(0.4) benign(0.176) TCGA-QC-A7B5-01 3 148871405 148871405 C T HPS3 Missense_Mutation p.P457L 0.30 tolerated(0.17) probably_damaging(0.991) TCGA-QC-A7B5-01 3 149089530 149089530 G A TM4SF1 Nonsense_Mutation p.Q180* 0.27 TCGA-QC-A7B5-01 3 149684123 149684123 C T PFN2 3'UTR 0.26 TCGA-QC-A7B5-01 3 149684124 149684124 C T PFN2 3'UTR 0.26 TCGA-QC-A7B5-01 3 151150845 151150845 G A MED12L 3'UTR 0.25 TCGA-QC-A7B5-01 3 151150846 151150846 G A MED12L 3'UTR 0.26 TCGA-QC-A7B5-01 3 151161405 151161405 A G IGSF10 Missense_Mutation p.V1777A 0.31 deleterious(0) benign(0.297) TCGA-QC-A7B5-01 3 151163068 151163069 - G IGSF10 Frame_Shift_Ins p.S1568Ifs*18 0.20 TCGA-QC-A7B5-01 3 152018007 152018007 C T MBNL1 Missense_Mutation p.R9W 0.33 deleterious(0) benign(0.026) TCGA-QC-A7B5-01 3 156424049 156424049 G A TIPARP 3'UTR 0.13 TCGA-QC-A7B5-01 3 157031465 157031465 C T VEPH1 Missense_Mutation p.G652E 0.36 tolerated(0.72) benign(0.001) TCGA-QC-A7B5-01 3 160135545 160135545 C T SMC4 Missense_Mutation p.S491L 0.30 tolerated(0.3) benign(0.005) TCGA-QC-A7B5-01 3 160135717 160135717 C T SMC4 Silent p.L548L 0.35 TCGA-QC-A7B5-01 3 160135718 160135718 C T SMC4 Missense_Mutation p.P549S 0.34 deleterious(0.02) benign(0.241) TCGA-QC-A7B5-01 3 160803877 160803877 G A B3GALNT1 Silent p.T222T 0.22 TCGA-QC-A7B5-01 3 161147358 161147358 G A RP11-3P17.5 RNA 0.18 TCGA-QC-A7B5-01 3 164697028 164697028 C T SI 3'UTR 0.16 TCGA-QC-A7B5-01 3 164741542 164741542 G A SI Missense_Mutation p.P972L 0.24 deleterious(0) probably_damaging(0.945) TCGA-QC-A7B5-01 3 164760860 164760860 G A SI Missense_Mutation p.S664F 0.12 deleterious(0) benign(0.221) TCGA-QC-A7B5-01 3 164905149 164905149 C T SLITRK3 3'UTR 0.29 TCGA-QC-A7B5-01 3 167068246 167068246 T A ZBBX Nonsense_Mutation p.K164* 0.33 TCGA-QC-A7B5-01 3 167277889 167277889 G A WDR49 Missense_Mutation p.T205I 0.34 deleterious(0.03) possibly_damaging(0.647) TCGA-QC-A7B5-01 3 168546942 168546942 C T EGFEM1P RNA 0.39 TCGA-QC-A7B5-01 3 168849229 168849229 G A MECOM Missense_Mutation p.P77S 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-QC-A7B5-01 3 168864318 168864318 G T MECOM 5'Flank 0.37 TCGA-QC-A7B5-01 3 168864319 168864319 A G MECOM 5'Flank 0.37 TCGA-QC-A7B5-01 3 169540355 169540355 T C LRRIQ4 Missense_Mutation p.F216L 0.40 tolerated(1) benign(0.028) TCGA-QC-A7B5-01 3 169644534 169644534 G A SAMD7 Missense_Mutation p.G162R 0.09 deleterious(0.03) possibly_damaging(0.898) TCGA-QC-A7B5-01 3 170875363 170875363 C T TNIK Silent p.R369R 0.42 TCGA-QC-A7B5-01 3 173998573 173998573 C T NLGN1 Missense_Mutation p.P651L 0.32 tolerated(0.06) probably_damaging(0.996) TCGA-QC-A7B5-01 3 17448008 17448008 C T TBC1D5 Missense_Mutation p.E60K 0.13 tolerated(0.26) benign(0.045) TCGA-QC-A7B5-01 3 179322577 179322577 C T NDUFB5 5'UTR 0.35 TCGA-QC-A7B5-01 3 183884038 183884038 A G DVL3 Silent p.G296G 0.23 TCGA-QC-A7B5-01 3 183897978 183897978 C T AP2M1 Missense_Mutation p.P121L 0.30 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 3 183897987 183897987 C T AP2M1 Missense_Mutation p.S124F 0.31 deleterious(0.01) probably_damaging(0.978) TCGA-QC-A7B5-01 3 183897988 183897988 C T AP2M1 Silent p.S124S 0.32 TCGA-QC-A7B5-01 3 183911535 183911535 C T ABCF3 3'UTR 0.35 TCGA-QC-A7B5-01 3 18392878 18392878 C T SATB1 Missense_Mutation p.G601E 0.30 tolerated_low_confidence(1) benign(0.003) TCGA-QC-A7B5-01 3 183954435 183954435 C G VWA5B2 Silent p.S477S 0.36 TCGA-QC-A7B5-01 3 183961355 183961355 G A ALG3 Silent p.P332P 0.16 TCGA-QC-A7B5-01 3 183994374 183994374 C T ECE2 Intron 0.35 TCGA-QC-A7B5-01 3 183994375 183994375 C T ECE2 Intron 0.37 TCGA-QC-A7B5-01 3 184039474 184039474 G A EIF4G1 Missense_Mutation p.E375K 0.13 tolerated(0.14) probably_damaging(0.965) TCGA-QC-A7B5-01 3 185407306 185407306 C T IGF2BP2 Missense_Mutation p.G172R 0.22 tolerated(0.13) possibly_damaging(0.873) TCGA-QC-A7B5-01 3 186370413 186370413 C T FETUB Missense_Mutation p.P381L 0.15 deleterious(0.03) possibly_damaging(0.888) TCGA-QC-A7B5-01 3 186944248 186944248 G A MASP1 Missense_Mutation p.P501L 0.43 tolerated(0.51) benign(0.011) TCGA-QC-A7B5-01 3 186944249 186944249 G A MASP1 Missense_Mutation p.P501S 0.43 tolerated(0.57) benign(0.007) TCGA-QC-A7B5-01 3 186954286 186954286 G A MASP1 Missense_Mutation p.P458L 0.43 tolerated(0.34) benign(0.018) TCGA-QC-A7B5-01 3 187416225 187416225 C T RTP2 3'UTR 0.45 TCGA-QC-A7B5-01 3 187416226 187416226 C T RTP2 3'UTR 0.43 TCGA-QC-A7B5-01 3 187420243 187420243 C T RP11-211G3.3 5'UTR 0.35 TCGA-QC-A7B5-01 3 191179057 191179057 G A PYDC2 Missense_Mutation p.G36R 0.40 tolerated(0.59) benign(0.268) TCGA-QC-A7B5-01 3 193160292 193160292 C T ATP13A4 Missense_Mutation p.E736K 0.25 tolerated(0.28) benign(0.021) TCGA-QC-A7B5-01 3 194063260 194063260 C T CPN2 Missense_Mutation p.E58K 0.38 deleterious(0.02) possibly_damaging(0.871) TCGA-QC-A7B5-01 3 194079376 194079376 G A LRRC15 3'UTR 0.29 TCGA-QC-A7B5-01 3 194373764 194373764 C T LSG1 Silent p.R289R 0.16 TCGA-QC-A7B5-01 3 195507565 195507565 T G MUC4 Missense_Mutation p.Q3629P 0.09 benign(0.044) TCGA-QC-A7B5-01 3 195511854 195511854 G A MUC4 Silent p.S2199S 0.07 TCGA-QC-A7B5-01 3 195513170 195513170 G A MUC4 Missense_Mutation p.L1761F 0.17 benign(0.394) TCGA-QC-A7B5-01 3 195513295 195513295 G A MUC4 Missense_Mutation p.S1719F 0.16 possibly_damaging(0.704) TCGA-QC-A7B5-01 3 195611735 195611735 C T TNK2 Missense_Mutation p.G198D 0.30 deleterious(0) probably_damaging(0.94) TCGA-QC-A7B5-01 3 195611736 195611736 C T TNK2 Missense_Mutation p.G198S 0.30 deleterious(0) possibly_damaging(0.88) TCGA-QC-A7B5-01 3 195711373 195711373 G A SDHAP1 RNA 0.09 TCGA-QC-A7B5-01 3 19575314 19575314 C T KCNH8 Missense_Mutation p.S1016L 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-QC-A7B5-01 3 19575380 19575380 C T KCNH8 Missense_Mutation p.S1038L 0.21 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-QC-A7B5-01 3 196612776 196612776 C T SENP5 Missense_Mutation p.R242W 0.28 deleterious(0.03) possibly_damaging(0.808) TCGA-QC-A7B5-01 3 2613178 2613178 G A CNTN4 5'UTR 0.16 TCGA-QC-A7B5-01 3 27415750 27415750 G A SLC4A7 3'UTR 0.11 TCGA-QC-A7B5-01 3 27431472 27431472 G A SLC4A7 Missense_Mutation p.L1095F 0.36 deleterious(0.01) probably_damaging(0.924) TCGA-QC-A7B5-01 3 28304819 28304819 C T CMC1 Silent p.I19I 0.17 TCGA-QC-A7B5-01 3 30648000 30648000 G A TGFBR2 5'Flank 0.32 TCGA-QC-A7B5-01 3 30648001 30648001 G A TGFBR2 5'Flank 0.32 TCGA-QC-A7B5-01 3 3084769 3084769 C T CNTN4 Missense_Mutation p.H874Y 0.21 tolerated(1) benign(0.005) TCGA-QC-A7B5-01 3 3085331 3085331 C T CNTN4 Silent p.I918I 0.42 TCGA-QC-A7B5-01 3 3097884 3097884 A T CNTN4 Missense_Mutation p.T1021S 0.32 tolerated(0.13) unknown(0) TCGA-QC-A7B5-01 3 3097885 3097885 C T CNTN4 Missense_Mutation p.T1021I 0.33 tolerated(0.07) unknown(0) TCGA-QC-A7B5-01 3 31658539 31658539 C T STT3B Silent p.F365F 0.31 TCGA-QC-A7B5-01 3 33194381 33194381 G A SUSD5 Silent p.T581T 0.40 TCGA-QC-A7B5-01 3 33614734 33614734 C T CLASP2 Missense_Mutation p.S865N 0.39 deleterious(0) benign(0.258) TCGA-QC-A7B5-01 3 35729275 35729275 G A ARPP21 Silent p.E102E 0.37 TCGA-QC-A7B5-01 3 35763105 35763105 G A ARPP21 Missense_Mutation p.R301K 0.29 tolerated(0.34) possibly_damaging(0.485) TCGA-QC-A7B5-01 3 37033458 37033458 G A EPM2AIP1 Missense_Mutation p.H371Y 0.29 deleterious(0.02) possibly_damaging(0.73) TCGA-QC-A7B5-01 3 38047358 38047358 C T VILL Missense_Mutation p.H676Y 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 3 38532831 38532831 C T ACVR2B 3'UTR 0.36 TCGA-QC-A7B5-01 3 38645322 38645322 T A SCN5A Nonsense_Mutation p.K591* 0.43 TCGA-QC-A7B5-01 3 38768108 38768108 G A SCN10A Missense_Mutation p.P1026S 0.37 tolerated(0.31) benign(0.021) TCGA-QC-A7B5-01 3 38768307 38768307 C T SCN10A Silent p.E959E 0.25 TCGA-QC-A7B5-01 3 38835268 38835268 G A SCN10A Silent p.P78P 0.11 TCGA-QC-A7B5-01 3 38936064 38936064 T C SCN11A Missense_Mutation p.D932G 0.32 tolerated(0.08) benign(0.006) TCGA-QC-A7B5-01 3 39172547 39172547 G A TTC21A Silent p.K848K 0.27 TCGA-QC-A7B5-01 3 39230562 39230562 G T XIRP1 Silent p.A125A 0.30 TCGA-QC-A7B5-01 3 40275400 40275400 C G MYRIP Silent p.V652V 0.21 TCGA-QC-A7B5-01 3 40558366 40558366 G A ZNF620 3'UTR 0.33 TCGA-QC-A7B5-01 3 42675116 42675116 C T NKTR Missense_Mutation p.S273F 0.28 tolerated_low_confidence(0.08) unknown(0) TCGA-QC-A7B5-01 3 42897886 42897886 C T ACKR2 Intron 0.34 TCGA-QC-A7B5-01 3 43074081 43074081 G A FAM198A Missense_Mutation p.G109E 0.23 tolerated_low_confidence(0.13) benign(0.045) TCGA-QC-A7B5-01 3 432467 432467 G A CHL1 Missense_Mutation p.D852N 0.24 tolerated(0.08) possibly_damaging(0.753) TCGA-QC-A7B5-01 3 44487910 44487910 G A ZNF445 3'UTR 0.40 TCGA-QC-A7B5-01 3 44487911 44487911 G A ZNF445 3'UTR 0.40 TCGA-QC-A7B5-01 3 44496724 44496724 G A ZNF445 Silent p.I106I 0.16 TCGA-QC-A7B5-01 3 44762543 44762543 C T ZNF502 Silent p.F78F 0.43 TCGA-QC-A7B5-01 3 44776957 44776957 G A ZNF501 3'UTR 0.62 TCGA-QC-A7B5-01 3 44777866 44777866 C T ZNF501 3'UTR 0.53 TCGA-QC-A7B5-01 3 44777867 44777867 C T ZNF501 3'UTR 0.53 TCGA-QC-A7B5-01 3 44974451 44974451 C T ZDHHC3 Silent p.E214E 0.35 TCGA-QC-A7B5-01 3 45988819 45988819 C A CXCR6 Nonsense_Mutation p.C282* 0.21 TCGA-QC-A7B5-01 3 45988820 45988820 C T CXCR6 Missense_Mutation p.L283F 0.22 deleterious(0.04) possibly_damaging(0.751) TCGA-QC-A7B5-01 3 46944150 46944150 C T PTH1R Missense_Mutation p.S449F 0.49 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 3 47047003 47047003 C T NBEAL2 Silent p.F2195F 0.33 TCGA-QC-A7B5-01 3 47047004 47047004 C T NBEAL2 Missense_Mutation p.H2196Y 0.32 deleterious(0.01) possibly_damaging(0.833) TCGA-QC-A7B5-01 3 47281506 47281506 C T KIF9 Intron 0.41 TCGA-QC-A7B5-01 3 47461103 47461103 G A SCAP Missense_Mutation p.P552L 0.31 deleterious(0.03) possibly_damaging(0.493) TCGA-QC-A7B5-01 3 47461104 47461104 G A SCAP Missense_Mutation p.P552S 0.31 tolerated(0.16) benign(0.102) TCGA-QC-A7B5-01 3 47618964 47618964 G A CSPG5 Silent p.P184P 0.36 TCGA-QC-A7B5-01 3 48266856 48266856 G A CAMP Missense_Mutation p.R155K 0.36 tolerated(1) benign(0.002) TCGA-QC-A7B5-01 3 48675410 48675410 G A CELSR3 3'UTR 0.35 TCGA-QC-A7B5-01 3 48896046 48896046 G A SLC25A20 Missense_Mutation p.P246L 0.35 deleterious(0) probably_damaging(0.987) TCGA-QC-A7B5-01 3 49005982 49005982 C T ARIH2 Missense_Mutation p.A185V 0.38 deleterious(0.04) benign(0.033) TCGA-QC-A7B5-01 3 49053742 49053742 G A DALRD3 Missense_Mutation p.S393F 0.32 deleterious(0.02) probably_damaging(0.984) TCGA-QC-A7B5-01 3 49133432 49133432 G A QARS 3'UTR 0.36 TCGA-QC-A7B5-01 3 49161903 49161903 C T LAMB2 Nonsense_Mutation p.W1084* 0.45 TCGA-QC-A7B5-01 3 49413014 49413014 G A RHOA Silent p.A3A 0.20 TCGA-QC-A7B5-01 3 49662558 49662558 C T BSN Silent p.P125P 0.41 TCGA-QC-A7B5-01 3 49698615 49698615 C T BSN Missense_Mutation p.R3113C 0.33 unknown(0) TCGA-QC-A7B5-01 3 49699682 49699682 G A BSN Silent p.R3468R 0.31 TCGA-QC-A7B5-01 3 49836363 49836363 G A CDHR4 Intron 0.39 TCGA-QC-A7B5-01 3 49869411 49869411 G A TRAIP Silent p.P325P 0.32 TCGA-QC-A7B5-01 3 49898674 49898674 G A CAMKV Silent p.F167F 0.30 TCGA-QC-A7B5-01 3 50329919 50329919 G A IFRD2 5'Flank 0.11 TCGA-QC-A7B5-01 3 50332650 50332650 C T HYAL3 Nonsense_Mutation p.W128* 0.24 TCGA-QC-A7B5-01 3 51265457 51265457 A G DOCK3 Missense_Mutation p.T529A 0.12 deleterious(0.02) benign(0.001) TCGA-QC-A7B5-01 3 51419860 51419860 C T DOCK3 3'UTR 0.29 TCGA-QC-A7B5-01 3 52088018 52088018 G A DUSP7 Missense_Mutation p.P297L 0.19 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 3 52088019 52088019 G A DUSP7 Missense_Mutation p.P297S 0.21 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 3 52255290 52255290 G A TLR9 Silent p.T1168T 0.32 TCGA-QC-A7B5-01 3 52256651 52256651 T A TLR9 Missense_Mutation p.M715L 0.35 tolerated(0.13) probably_damaging(0.988) TCGA-QC-A7B5-01 3 52485173 52485173 G A TNNC1 3'UTR 0.32 TCGA-QC-A7B5-01 3 52538553 52538553 C T STAB1 Silent p.S409S 0.16 TCGA-QC-A7B5-01 3 52557974 52557974 G A STAB1 Missense_Mutation p.G2495R 0.23 deleterious(0) possibly_damaging(0.872) TCGA-QC-A7B5-01 3 52557975 52557975 G A STAB1 Missense_Mutation p.G2495E 0.23 deleterious(0) possibly_damaging(0.776) TCGA-QC-A7B5-01 3 52562234 52562234 C T NT5DC2 Missense_Mutation p.E246K 0.43 tolerated(0.05) possibly_damaging(0.699) TCGA-QC-A7B5-01 3 52595909 52595909 G A PBRM1 Silent p.L1336L 0.26 TCGA-QC-A7B5-01 3 52623106 52623106 C T PBRM1 Missense_Mutation p.R982K 0.30 tolerated(0.2) benign(0.001) TCGA-QC-A7B5-01 3 52814391 52814391 G A ITIH1 Missense_Mutation p.G227E 0.17 tolerated(0.61) probably_damaging(0.963) TCGA-QC-A7B5-01 3 52817259 52817259 G A ITIH1 Missense_Mutation p.G377R 0.31 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 3 52819120 52819120 G A ITIH1 Missense_Mutation p.D490N 0.26 tolerated(1) benign(0.008) TCGA-QC-A7B5-01 3 52823792 52823792 C T ITIH1 Missense_Mutation p.P748L 0.17 tolerated(0.22) probably_damaging(0.986) TCGA-QC-A7B5-01 3 52852107 52852107 G A ITIH4 Missense_Mutation p.R753C 0.26 deleterious(0.02) benign(0.039) TCGA-QC-A7B5-01 3 53845286 53845286 C T CACNA1D Silent p.P2133P 0.24 TCGA-QC-A7B5-01 3 53922480 53922480 G A SELK Missense_Mutation p.P17L 0.27 tolerated(0.64) benign(0.028) TCGA-QC-A7B5-01 3 54604049 54604049 G A CACNA2D3 Missense_Mutation p.G269E 0.41 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 3 54958660 54958660 T A LRTM1 Missense_Mutation p.K197I 0.13 deleterious(0.03) benign(0.312) TCGA-QC-A7B5-01 3 55542619 55542619 G A ERC2 3'UTR 0.11 TCGA-QC-A7B5-01 3 56807784 56807784 G A ARHGEF3 Missense_Mutation p.P85S 0.34 tolerated(1) possibly_damaging(0.61) TCGA-QC-A7B5-01 3 56807787 56807787 T G ARHGEF3 Missense_Mutation p.I84L 0.34 tolerated(0.35) benign(0.012) TCGA-QC-A7B5-01 3 57232443 57232443 C T HESX1 Silent p.L145L 0.48 TCGA-QC-A7B5-01 3 57543204 57543204 G A PDE12 Silent p.E366E 0.31 TCGA-QC-A7B5-01 3 57543205 57543205 G A PDE12 Missense_Mutation p.A367T 0.31 tolerated(0.14) benign(0.374) TCGA-QC-A7B5-01 3 58149009 58149009 C T FLNB Missense_Mutation p.P2415S 0.14 deleterious(0.03) possibly_damaging(0.732) TCGA-QC-A7B5-01 3 58484344 58484344 C T KCTD6 5'UTR 0.31 TCGA-QC-A7B5-01 3 62248344 62248344 C T PTPRG Intron 0.42 TCGA-QC-A7B5-01 3 62278334 62278334 G A PTPRG Intron 0.33 TCGA-QC-A7B5-01 3 69025936 69025936 G A EOGT 3'UTR 0.36 TCGA-QC-A7B5-01 3 73433538 73433538 G A PDZRN3 Missense_Mutation p.R727C 0.25 deleterious(0.01) probably_damaging(0.915) TCGA-QC-A7B5-01 3 73433539 73433539 G A PDZRN3 Silent p.F726F 0.25 TCGA-QC-A7B5-01 3 74414788 74414788 C T CNTN3 Missense_Mutation p.E338K 0.32 deleterious(0.01) benign(0.354) TCGA-QC-A7B5-01 3 7494321 7494321 A G GRM7 Missense_Mutation p.N401S 0.28 tolerated(1) benign(0.013) TCGA-QC-A7B5-01 3 81548274 81548274 G A GBE1 Missense_Mutation p.P680L 0.17 deleterious(0.02) possibly_damaging(0.596) TCGA-QC-A7B5-01 3 86117373 86117373 T A CADM2 3'Flank 0.19 TCGA-QC-A7B5-01 3 9023479 9023479 C T SRGAP3 3'UTR 0.17 TCGA-QC-A7B5-01 3 97851550 97851550 G A OR5H1 Silent p.E3E 0.39 TCGA-QC-A7B5-01 3 9876576 9876576 C T TTLL3 Silent p.I779I 0.20 TCGA-QC-A7B5-01 3 9918765 9918765 C T CIDEC Silent p.E64E 0.29 TCGA-QC-A7B5-01 4 100228949 100228949 G A ADH1B 3'UTR 0.31 TCGA-QC-A7B5-01 4 100228950 100228950 G A ADH1B 3'UTR 0.31 TCGA-QC-A7B5-01 4 100480404 100480404 G A TRMT10A Missense_Mutation p.P31L 0.26 tolerated(0.1) benign(0.004) TCGA-QC-A7B5-01 4 100480405 100480405 G A TRMT10A Missense_Mutation p.P31S 0.28 tolerated(0.25) benign(0.007) TCGA-QC-A7B5-01 4 102951401 102951401 A G BANK1 Missense_Mutation p.T627A 0.26 tolerated(0.12) benign(0.024) TCGA-QC-A7B5-01 4 103822399 103822399 A T SLC9B1 Missense_Mutation p.L475I 0.08 deleterious(0) probably_damaging(0.928) TCGA-QC-A7B5-01 4 107843202 107843202 G A DKK2 3'UTR 0.31 TCGA-QC-A7B5-01 4 110790995 110790995 C T LRIT3 Missense_Mutation p.H364Y 0.36 deleterious(0.02) benign(0.32) TCGA-QC-A7B5-01 4 110880580 110880580 G A EGF Silent p.R351R 0.34 TCGA-QC-A7B5-01 4 113479385 113479385 G A C4orf21 Missense_Mutation p.P1681S 0.29 tolerated(0.45) benign(0.006) TCGA-QC-A7B5-01 4 113509018 113509018 C T C4orf21 Silent p.Q1065Q 0.42 TCGA-QC-A7B5-01 4 114262846 114262846 T C ANK2 Missense_Mutation p.F1299S 0.25 probably_damaging(0.996) TCGA-QC-A7B5-01 4 114899666 114899666 C T ARSJ Missense_Mutation p.E109K 0.36 tolerated(0.08) benign(0.034) TCGA-QC-A7B5-01 4 115544185 115544185 A C UGT8 Missense_Mutation p.H50P 0.20 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 4 115856466 115856466 A G NDST4 Silent p.L478L 0.34 TCGA-QC-A7B5-01 4 115997550 115997550 G A NDST4 Missense_Mutation p.L215F 0.30 deleterious(0.01) probably_damaging(0.995) TCGA-QC-A7B5-01 4 120486517 120486517 G T PDE5A Missense_Mutation p.Q318K 0.32 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 4 122836087 122836087 G A TRPC3 Missense_Mutation p.P397S 0.16 deleterious(0) possibly_damaging(0.723) TCGA-QC-A7B5-01 4 123302156 123302156 C T ADAD1 Missense_Mutation p.P61L 0.36 tolerated(0.05) possibly_damaging(0.613) TCGA-QC-A7B5-01 4 134071955 134071955 G A PCDH10 Silent p.G220G 0.17 TCGA-QC-A7B5-01 4 135122209 135122209 G A PABPC4L Missense_Mutation p.S47F 0.27 tolerated_low_confidence(0.17) benign(0.134) TCGA-QC-A7B5-01 4 140432985 140432985 G A SETD7 Silent p.P311P 0.14 TCGA-QC-A7B5-01 4 141055231 141055231 C T MAML3 Intron 0.40 TCGA-QC-A7B5-01 4 141446625 141446625 C T ELMOD2 Nonsense_Mutation p.R15* 0.28 TCGA-QC-A7B5-01 4 142949755 142949755 G A INPP4B 3'UTR 0.33 TCGA-QC-A7B5-01 4 144793276 144793276 G A GYPE 3'UTR 0.26 TCGA-QC-A7B5-01 4 145633172 145633172 A C HHIP Missense_Mutation p.K458Q 0.37 tolerated(1) benign(0.061) TCGA-QC-A7B5-01 4 151153862 151153862 C T DCLK2 Missense_Mutation p.S500L 0.29 deleterious(0.03) benign(0.329) TCGA-QC-A7B5-01 4 151773285 151773285 C T LRBA Missense_Mutation p.E1193K 0.24 tolerated_low_confidence(0.19) benign(0.031) TCGA-QC-A7B5-01 4 155411865 155411865 C T DCHS2 Missense_Mutation p.D215N 0.30 tolerated(0.07) benign(0.004) TCGA-QC-A7B5-01 4 156269048 156269048 C T MAP9 Missense_Mutation p.E611K 0.31 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 4 156698696 156698696 C T GUCY1B3 Missense_Mutation p.L67F 0.28 deleterious(0) possibly_damaging(0.521) TCGA-QC-A7B5-01 4 156724875 156724875 G A GUCY1B3 Missense_Mutation p.E505K 0.24 tolerated(0.06) benign(0.026) TCGA-QC-A7B5-01 4 15716984 15716984 G A BST1 Missense_Mutation p.G204D 0.41 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 4 15716985 15716985 G A BST1 Splice_Site p.X204_splice 0.41 TCGA-QC-A7B5-01 4 159568146 159568146 C T RXFP1 Missense_Mutation p.P517S 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-QC-A7B5-01 4 162307514 162307514 C T FSTL5 Silent p.K643K 0.33 TCGA-QC-A7B5-01 4 165722399 165722399 G A RP11-294O2.2 RNA 0.21 TCGA-QC-A7B5-01 4 166006749 166006749 C T TMEM192 Silent p.E222E 0.33 TCGA-QC-A7B5-01 4 167675837 167675837 G A SPOCK3 Silent p.G254G 0.23 TCGA-QC-A7B5-01 4 169327143 169327143 C T DDX60L Silent p.K1057K 0.43 TCGA-QC-A7B5-01 4 170628344 170628344 T C CLCN3 Silent p.F692F 0.37 TCGA-QC-A7B5-01 4 173269726 173269726 C T GALNTL6 Missense_Mutation p.P147S 0.21 tolerated(0.08) probably_damaging(1) TCGA-QC-A7B5-01 4 174242873 174242873 A - GALNT7 3'UTR 0.24 TCGA-QC-A7B5-01 4 175412909 175412909 G A HPGD 3'UTR 0.56 TCGA-QC-A7B5-01 4 175598335 175598335 G A GLRA3 Missense_Mutation p.S274L 0.30 deleterious(0) probably_damaging(0.991) TCGA-QC-A7B5-01 4 17600148 17600148 C T LAP3 Missense_Mutation p.P383S 0.45 deleterious(0) probably_damaging(0.956) TCGA-QC-A7B5-01 4 17600149 17600149 C T LAP3 Missense_Mutation p.P383L 0.45 deleterious(0) probably_damaging(0.983) TCGA-QC-A7B5-01 4 176554884 176554884 C T GPM6A 3'UTR 0.30 TCGA-QC-A7B5-01 4 17666185 17666185 C T FAM184B Missense_Mutation p.R565K 0.31 tolerated(0.16) benign(0.28) TCGA-QC-A7B5-01 4 1807115 1807115 C T FGFR3 Silent p.C484C 0.16 TCGA-QC-A7B5-01 4 185039053 185039053 C T ENPP6 Silent p.K178K 0.32 TCGA-QC-A7B5-01 4 186231899 186231899 C T SNX25 Silent p.L261L 0.16 TCGA-QC-A7B5-01 4 187153438 187153438 G A KLKB1 Silent p.E72E 0.20 TCGA-QC-A7B5-01 4 187524966 187524966 G A FAT1 Nonsense_Mutation p.Q3572* 0.27 TCGA-QC-A7B5-01 4 1956939 1956939 C T WHSC1 Missense_Mutation p.A797V 0.23 tolerated(0.23) benign(0.002) TCGA-QC-A7B5-01 4 1957789 1957789 C T WHSC1 Missense_Mutation p.P919S 0.33 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 4 20544139 20544139 C T SLIT2 Silent p.S722S 0.33 TCGA-QC-A7B5-01 4 22394264 22394264 C T GPR125 Missense_Mutation p.G844E 0.24 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 4 2628206 2628206 G A FAM193A 5'UTR 0.34 TCGA-QC-A7B5-01 4 26483651 26483651 T - CCKAR Frame_Shift_Del p.N299Tfs*7 0.21 TCGA-QC-A7B5-01 4 265142 265142 A G ZNF732 Missense_Mutation p.Y502H 0.36 deleterious(0.02) possibly_damaging(0.519) TCGA-QC-A7B5-01 4 265861 265861 G A ZNF732 Missense_Mutation p.S262F 0.37 tolerated(0.31) benign(0.001) TCGA-QC-A7B5-01 4 3242418 3242418 C T HTT 3'UTR 0.42 TCGA-QC-A7B5-01 4 3255061 3255061 G A MSANTD1 Missense_Mutation p.G150R 0.30 deleterious(0.02) probably_damaging(0.973) TCGA-QC-A7B5-01 4 3319035 3319035 C T RGS12 Missense_Mutation p.L380F 0.24 tolerated(0.4) probably_damaging(0.988) TCGA-QC-A7B5-01 4 36134863 36134863 A T ARAP2 Missense_Mutation p.F1138I 0.32 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 4 36317997 36317997 C T DTHD1 Silent p.V618V 0.14 TCGA-QC-A7B5-01 4 37592333 37592333 G A C4orf19 Missense_Mutation p.G219E 0.40 tolerated(0.55) benign(0.168) TCGA-QC-A7B5-01 4 3769700 3769700 G A ADRA2C Missense_Mutation p.R456K 0.27 tolerated(0.93) unknown(0) TCGA-QC-A7B5-01 4 39116813 39116813 G A KLHL5 Missense_Mutation p.A692T 0.41 tolerated(0.08) probably_damaging(1) TCGA-QC-A7B5-01 4 39184051 39184051 C T WDR19 5'UTR 0.32 TCGA-QC-A7B5-01 4 39515778 39515778 G A UGDH Silent p.S63S 0.33 TCGA-QC-A7B5-01 4 39515779 39515779 G A UGDH Missense_Mutation p.S63F 0.34 deleterious(0.03) benign(0.013) TCGA-QC-A7B5-01 4 40337493 40337493 G A CHRNA9 Nonsense_Mutation p.W3* 0.40 TCGA-QC-A7B5-01 4 40892488 40892488 G A APBB2 Silent p.I474I 0.24 TCGA-QC-A7B5-01 4 41747839 41747839 C T PHOX2B Silent p.K310K 0.23 TCGA-QC-A7B5-01 4 42122234 42122234 C T BEND4 Silent p.K408K 0.40 TCGA-QC-A7B5-01 4 44176909 44176909 C T KCTD8 Missense_Mutation p.M440I 0.29 deleterious(0.01) possibly_damaging(0.775) TCGA-QC-A7B5-01 4 47938975 47938975 G A CNGA1 Silent p.I581I 0.38 TCGA-QC-A7B5-01 4 515878 515878 G A PIGG Intron 0.38 TCGA-QC-A7B5-01 4 517561 517561 C T PIGG Missense_Mutation p.S643F 0.27 tolerated(0.11) benign(0.002) TCGA-QC-A7B5-01 4 55138666 55138666 T G PDGFRA Missense_Mutation p.M448R 0.25 tolerated(0.12) benign(0.06) TCGA-QC-A7B5-01 4 55565855 55565855 G A KIT Missense_Mutation p.E227K 0.21 deleterious(0) possibly_damaging(0.847) TCGA-QC-A7B5-01 4 56300364 56300364 T C CLOCK 3'UTR 0.11 TCGA-QC-A7B5-01 4 57182186 57182186 G A KIAA1211 Missense_Mutation p.E840K 0.29 deleterious(0) possibly_damaging(0.486) TCGA-QC-A7B5-01 4 57189570 57189570 C T KIAA1211 Missense_Mutation p.S1072F 0.25 deleterious(0) possibly_damaging(0.683) TCGA-QC-A7B5-01 4 59433 59433 G A ZNF595 Silent p.R38R 0.07 TCGA-QC-A7B5-01 4 66189751 66189751 C T EPHA5 3'UTR 0.23 TCGA-QC-A7B5-01 4 66230811 66230811 A T EPHA5 Missense_Mutation p.D720E 0.23 tolerated(0.06) possibly_damaging(0.86) TCGA-QC-A7B5-01 4 68447177 68447177 A G STAP1 Missense_Mutation p.N173S 0.33 tolerated(0.45) benign(0.007) TCGA-QC-A7B5-01 4 68496241 68496241 G A UBA6 Silent p.F757F 0.29 TCGA-QC-A7B5-01 4 69179299 69179299 A G YTHDC1 3'UTR 0.36 TCGA-QC-A7B5-01 4 69344607 69344607 C T TMPRSS11E Silent p.L336L 0.29 TCGA-QC-A7B5-01 4 69426354 69426354 T A UGT2B17 Missense_Mutation p.E302D 0.11 tolerated(0.15) benign(0.06) TCGA-QC-A7B5-01 4 69431360 69431360 G A UGT2B17 Missense_Mutation p.P268L 0.33 deleterious(0) probably_damaging(0.917) TCGA-QC-A7B5-01 4 69431410 69431410 C T UGT2B17 Missense_Mutation p.M251I 0.39 deleterious(0.04) benign(0.251) TCGA-QC-A7B5-01 4 7043909 7043909 T A CCDC96 Missense_Mutation p.I253F 0.40 deleterious(0) probably_damaging(0.917) TCGA-QC-A7B5-01 4 7043910 7043910 C T CCDC96 Silent p.K252K 0.40 TCGA-QC-A7B5-01 4 70821277 70821277 G A CSN2 3'UTR 0.23 TCGA-QC-A7B5-01 4 70921290 70921290 C T HTN1 3'UTR 0.34 TCGA-QC-A7B5-01 4 71020143 71020143 G A C4orf40 Silent p.K17K 0.18 TCGA-QC-A7B5-01 4 71472162 71472162 C T AMBN Silent p.L353L 0.40 TCGA-QC-A7B5-01 4 71472327 71472327 C T AMBN Silent p.F408F 0.16 TCGA-QC-A7B5-01 4 71500252 71500252 A G ENAM Silent p.Q146Q 0.32 TCGA-QC-A7B5-01 4 71686522 71686522 G A GRSF1 3'UTR 0.46 TCGA-QC-A7B5-01 4 72434162 72434162 C T SLC4A4 3'UTR 0.37 TCGA-QC-A7B5-01 4 73169770 73169770 T C ADAMTS3 Missense_Mutation p.Y763C 0.39 deleterious(0) probably_damaging(0.928) TCGA-QC-A7B5-01 4 73923755 73923755 C T COX18 3'UTR 0.29 TCGA-QC-A7B5-01 4 73956416 73956416 G A ANKRD17 Missense_Mutation p.P2310L 0.38 possibly_damaging(0.694) TCGA-QC-A7B5-01 4 76808020 76808020 G A PPEF2 Silent p.I188I 0.34 TCGA-QC-A7B5-01 4 77177483 77177483 C T FAM47E Missense_Mutation p.P76L 0.41 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 4 7728597 7728597 G A SORCS2 Missense_Mutation p.V946M 0.38 tolerated(0.35) benign(0.011) TCGA-QC-A7B5-01 4 7742066 7742066 C T SORCS2 3'UTR 0.55 TCGA-QC-A7B5-01 4 77660843 77660843 G A SHROOM3 Missense_Mutation p.G506E 0.23 tolerated(0.27) benign(0.003) TCGA-QC-A7B5-01 4 79343054 79343054 C T FRAS1 Silent p.I1526I 0.21 TCGA-QC-A7B5-01 4 79362427 79362427 G A FRAS1 Missense_Mutation p.G1881S 0.44 probably_damaging(0.979) TCGA-QC-A7B5-01 4 79800357 79800357 A C BMP2K Intron 0.38 TCGA-QC-A7B5-01 4 79841169 79841169 C A PAQR3 3'UTR 0.22 TCGA-QC-A7B5-01 4 81791227 81791227 G A C4orf22 Silent p.T155T 0.16 TCGA-QC-A7B5-01 4 81866076 81866076 C T C4orf22 Missense_Mutation p.L214F 0.14 deleterious(0) possibly_damaging(0.861) TCGA-QC-A7B5-01 4 8221204 8221204 C T SH3TC1 Silent p.G353G 0.41 TCGA-QC-A7B5-01 4 82353459 82353459 G A RASGEF1B Missense_Mutation p.S464F 0.28 deleterious(0) benign(0.252) TCGA-QC-A7B5-01 4 83280730 83280730 G A HNRNPD Missense_Mutation p.S118F 0.40 deleterious(0.02) possibly_damaging(0.863) TCGA-QC-A7B5-01 4 83406661 83406661 G A TMEM150C 3'UTR 0.23 TCGA-QC-A7B5-01 4 83406662 83406662 G A TMEM150C 3'UTR 0.23 TCGA-QC-A7B5-01 4 83601976 83601976 G A SCD5 Silent p.F151F 0.26 TCGA-QC-A7B5-01 4 84339339 84339341 AAC TA HELQ Frame_Shift_Del p.V990Yfs*7 0.24 TCGA-QC-A7B5-01 4 84368140 84368140 C T HELQ Missense_Mutation p.E414K 0.45 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 4 85701377 85701377 G A WDFY3 Silent p.L1417L 0.31 TCGA-QC-A7B5-01 4 8588896 8588896 C T GPR78 Missense_Mutation p.P300S 0.40 deleterious(0.05) benign(0.001) TCGA-QC-A7B5-01 4 87280907 87280907 G A MAPK10 5'UTR 0.23 TCGA-QC-A7B5-01 4 88533801 88533801 A T DSPP Missense_Mutation p.N155Y 0.34 benign(0.276) TCGA-QC-A7B5-01 4 88535015 88535015 G A DSPP Missense_Mutation p.D401N 0.27 benign(0.012) TCGA-QC-A7B5-01 4 89385033 89385033 G C HERC5 Missense_Mutation p.G270R 0.35 deleterious(0.02) probably_damaging(0.987) TCGA-QC-A7B5-01 4 90857534 90857534 C T MMRN1 Silent p.S901S 0.47 TCGA-QC-A7B5-01 4 91321246 91321246 T G CCSER1 Silent p.L523L 0.37 TCGA-QC-A7B5-01 4 95194791 95194791 C T SMARCAD1 Silent p.A532A 0.32 TCGA-QC-A7B5-01 4 96762304 96762304 G A PDHA2 Missense_Mutation p.E335K 0.30 tolerated(0.49) possibly_damaging(0.702) TCGA-QC-A7B5-01 4 9889256 9889256 G A SLC2A9 Missense_Mutation p.P409L 0.24 tolerated(0.07) benign(0.061) TCGA-QC-A7B5-01 5 102201874 102201874 C T PAM 5'UTR 0.17 TCGA-QC-A7B5-01 5 102201875 102201875 C T PAM 5'UTR 0.17 TCGA-QC-A7B5-01 5 10262666 10262666 T - CCT5 Frame_Shift_Del p.V418Gfs*26 0.27 TCGA-QC-A7B5-01 5 112178969 112178969 C T APC Nonsense_Mutation p.R2560* 0.25 TCGA-QC-A7B5-01 5 112312455 112312455 G A DCP2 5'UTR 0.49 TCGA-QC-A7B5-01 5 112312456 112312456 G A DCP2 5'UTR 0.47 TCGA-QC-A7B5-01 5 112860746 112860746 C T YTHDC2 Missense_Mutation p.T116I 0.18 tolerated(0.08) benign(0.028) TCGA-QC-A7B5-01 5 114466386 114466386 G A TRIM36 Missense_Mutation p.R579C 0.44 tolerated(0.1) possibly_damaging(0.79) TCGA-QC-A7B5-01 5 114916909 114916909 G A TICAM2 Intron 0.34 TCGA-QC-A7B5-01 5 115780668 115780668 G A SEMA6A 3'UTR 0.37 TCGA-QC-A7B5-01 5 115780669 115780669 G A SEMA6A 3'UTR 0.37 TCGA-QC-A7B5-01 5 121488433 121488433 G A ZNF474 Missense_Mutation p.E250K 0.32 deleterious(0.02) benign(0.172) TCGA-QC-A7B5-01 5 121786794 121786794 C T SNCAIP Missense_Mutation p.T751I 0.18 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 5 1253883 1253883 T C TERT Missense_Mutation p.N1120S 0.28 tolerated(0.14) benign(0.002) TCGA-QC-A7B5-01 5 125961010 125961010 C T PHAX 3'UTR 0.45 TCGA-QC-A7B5-01 5 126888704 126888704 G T PRRC1 3'UTR 0.24 TCGA-QC-A7B5-01 5 127674749 127674749 G A FBN2 Silent p.I1116I 0.28 TCGA-QC-A7B5-01 5 127681107 127681107 G A FBN2 Silent p.P1053P 0.37 TCGA-QC-A7B5-01 5 128983562 128983562 C T ADAMTS19 Silent p.I653I 0.15 TCGA-QC-A7B5-01 5 129520880 129520880 C T CHSY3 Missense_Mutation p.P682L 0.22 deleterious(0.04) probably_damaging(1) TCGA-QC-A7B5-01 5 130977768 130977768 A - FNIP1 3'Flank 0.27 TCGA-QC-A7B5-01 5 131308476 131308476 G A ACSL6 Missense_Mutation p.R427W 0.29 deleterious(0) possibly_damaging(0.742) TCGA-QC-A7B5-01 5 131309055 131309055 G A ACSL6 Silent p.F369F 0.29 TCGA-QC-A7B5-01 5 131719897 131719897 C T SLC22A5 Silent p.L186L 0.36 TCGA-QC-A7B5-01 5 132269890 132269890 G A AFF4 Silent p.P289P 0.12 TCGA-QC-A7B5-01 5 133304399 133304399 G A C5orf15 5'UTR 0.45 TCGA-QC-A7B5-01 5 133308428 133308428 A C VDAC1 3'UTR 0.37 TCGA-QC-A7B5-01 5 133634187 133634187 A C CDKL3 3'UTR 0.19 TCGA-QC-A7B5-01 5 133914743 133914743 G A JADE2 Silent p.K703K 0.35 TCGA-QC-A7B5-01 5 133918398 133918398 C T JADE2 3'UTR 0.37 TCGA-QC-A7B5-01 5 135587462 135587462 G A TRPC7 Missense_Mutation p.S485F 0.26 deleterious(0) possibly_damaging(0.884) TCGA-QC-A7B5-01 5 135692516 135692516 C T TRPC7 Missense_Mutation p.G187D 0.48 tolerated(0.11) probably_damaging(0.962) TCGA-QC-A7B5-01 5 13753556 13753556 C T DNAH5 Missense_Mutation p.R3553Q 0.35 benign(0.238) TCGA-QC-A7B5-01 5 137673818 137673818 G A FAM53C 5'UTR 0.40 TCGA-QC-A7B5-01 5 137766111 137766111 C T KDM3B Silent p.H1689H 0.31 TCGA-QC-A7B5-01 5 139507050 139507050 C T IGIP 5'UTR 0.18 TCGA-QC-A7B5-01 5 139905961 139905961 T A ANKHD1 Missense_Mutation p.Y1625N 0.25 benign(0.241) TCGA-QC-A7B5-01 5 140056691 140056691 G A HARS Silent p.S278S 0.27 TCGA-QC-A7B5-01 5 140181134 140181134 C T PCDHA3 Missense_Mutation p.H118Y 0.24 deleterious_low_confidence(0) benign(0.23) TCGA-QC-A7B5-01 5 140221343 140221343 G A PCDHA8 Missense_Mutation p.R146K 0.28 tolerated_low_confidence(0.16) benign(0.008) TCGA-QC-A7B5-01 5 140229445 140229445 C T PCDHA9 Silent p.F455F 0.31 TCGA-QC-A7B5-01 5 140250272 140250272 G A PCDHA11 Silent p.E528E 0.31 TCGA-QC-A7B5-01 5 140250273 140250273 C T PCDHA11 Silent p.L529L 0.32 TCGA-QC-A7B5-01 5 140250308 140250308 C T PCDHA11 Silent p.G540G 0.30 TCGA-QC-A7B5-01 5 140262754 140262754 G A PCDHA13 Missense_Mutation p.E301K 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.851) TCGA-QC-A7B5-01 5 140348419 140348419 G A PCDHAC2 Missense_Mutation p.D690N 0.18 deleterious(0.02) benign(0.188) TCGA-QC-A7B5-01 5 140516693 140516693 C T PCDHB5 Silent p.F559F 0.16 TCGA-QC-A7B5-01 5 140531767 140531767 G A PCDHB6 Silent p.K643K 0.27 TCGA-QC-A7B5-01 5 140554453 140554453 C T PCDHB7 Silent p.D679D 0.21 TCGA-QC-A7B5-01 5 140554454 140554454 C T PCDHB7 Nonsense_Mutation p.Q680* 0.21 TCGA-QC-A7B5-01 5 140554846 140554846 G A PCDHB7 3'UTR 0.07 TCGA-QC-A7B5-01 5 140558099 140558099 G A PCDHB8 Missense_Mutation p.D162N 0.21 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-QC-A7B5-01 5 140558546 140558546 G A PCDHB8 Missense_Mutation p.E311K 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-QC-A7B5-01 5 140574858 140574858 A T PCDHB10 3'UTR 0.37 TCGA-QC-A7B5-01 5 140580724 140580724 C T PCDHB11 Silent p.F459F 0.15 TCGA-QC-A7B5-01 5 140590363 140590363 G A PCDHB12 Silent p.R628R 0.15 TCGA-QC-A7B5-01 5 140605680 140605680 G A PCDHB14 3'UTR 0.10 TCGA-QC-A7B5-01 5 140626575 140626575 G A PCDHB15 Missense_Mutation p.D477N 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QC-A7B5-01 5 140710482 140710482 G A PCDHGA1 Silent p.L77L 0.26 TCGA-QC-A7B5-01 5 140719689 140719689 G T PCDHGA2 Missense_Mutation p.C384F 0.17 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-QC-A7B5-01 5 140719794 140719794 A G PCDHGA2 Missense_Mutation p.N419S 0.33 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-QC-A7B5-01 5 140735371 140735371 C T PCDHGA4 Missense_Mutation p.R202C 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-QC-A7B5-01 5 140743929 140743929 G A PCDHGA5 Missense_Mutation p.G11E 0.23 tolerated_low_confidence(0.87) benign(0.002) TCGA-QC-A7B5-01 5 140750451 140750451 G A PCDHGB3 Missense_Mutation p.V164I 0.32 tolerated(0.7) benign(0.069) TCGA-QC-A7B5-01 5 140750452 140750452 T A PCDHGB3 Missense_Mutation p.V164D 0.31 tolerated(0.16) possibly_damaging(0.719) TCGA-QC-A7B5-01 5 140767511 140767511 C T PCDHGB4 Silent p.F20F 0.26 TCGA-QC-A7B5-01 5 140773133 140773133 C T PCDHGA8 Silent p.V251V 0.17 TCGA-QC-A7B5-01 5 140773134 140773134 C T PCDHGA8 Missense_Mutation p.L252F 0.17 deleterious_low_confidence(0) possibly_damaging(0.663) TCGA-QC-A7B5-01 5 140794683 140794683 A G PCDHGA10 Silent p.V647V 0.29 TCGA-QC-A7B5-01 5 140794690 140794690 G A PCDHGA10 Missense_Mutation p.V650I 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.873) TCGA-QC-A7B5-01 5 141248608 141248608 G A PCDH1 Silent p.L143L 0.15 TCGA-QC-A7B5-01 5 141532330 141532330 C T NDFIP1 3'UTR 0.27 TCGA-QC-A7B5-01 5 145439745 145439745 C T SH3RF2 Silent p.S624S 0.30 TCGA-QC-A7B5-01 5 146971250 146971250 C T JAKMIP2 Splice_Site p.X805_splice 0.37 TCGA-QC-A7B5-01 5 147030002 147030002 C T JAKMIP2 Missense_Mutation p.E246K 0.35 deleterious(0) probably_damaging(0.97) TCGA-QC-A7B5-01 5 147692067 147692067 C T SPINK7 Silent p.L7L 0.40 TCGA-QC-A7B5-01 5 149012254 149012254 C T ARHGEF37 3'UTR 0.24 TCGA-QC-A7B5-01 5 149247673 149247673 C T PDE6A Nonsense_Mutation p.W728* 0.34 TCGA-QC-A7B5-01 5 149360913 149360913 C T SLC26A2 Missense_Mutation p.P586L 0.40 deleterious(0) probably_damaging(0.992) TCGA-QC-A7B5-01 5 149389794 149389794 C T HMGXB3 Missense_Mutation p.P145S 0.41 tolerated(0.83) benign(0.009) TCGA-QC-A7B5-01 5 149460368 149460368 G A CSF1R Missense_Mutation p.P90L 0.27 deleterious(0.04) benign(0.008) TCGA-QC-A7B5-01 5 149495421 149495421 G A PDGFRB Missense_Mutation p.L1076F 0.29 tolerated_low_confidence(0.15) benign(0.145) TCGA-QC-A7B5-01 5 150031737 150031737 C T SYNPO 3'UTR 0.41 TCGA-QC-A7B5-01 5 150158214 150158214 C T AC010441.1 Missense_Mutation p.S28F 0.31 possibly_damaging(0.683) TCGA-QC-A7B5-01 5 150413231 150413231 G A TNIP1 Missense_Mutation p.P573S 0.43 deleterious(0.03) possibly_damaging(0.745) TCGA-QC-A7B5-01 5 150856159 150856159 C T SLC36A1 Silent p.P277P 0.32 TCGA-QC-A7B5-01 5 151183530 151183530 C T G3BP1 Missense_Mutation p.R427C 0.47 tolerated(0.11) benign(0.002) TCGA-QC-A7B5-01 5 151784292 151784292 G A NMUR2 Missense_Mutation p.T128I 0.33 deleterious(0.01) benign(0.199) TCGA-QC-A7B5-01 5 151784535 151784535 G A NMUR2 Missense_Mutation p.P47L 0.33 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 5 153433060 153433060 G A MFAP3 Silent p.R292R 0.21 TCGA-QC-A7B5-01 5 153855041 153855041 G A HAND1 3'UTR 0.22 TCGA-QC-A7B5-01 5 153855042 153855042 G A HAND1 3'UTR 0.21 TCGA-QC-A7B5-01 5 156590527 156590527 G A FAM71B Missense_Mutation p.P250L 0.44 tolerated(0.15) benign(0) TCGA-QC-A7B5-01 5 156590528 156590528 G A FAM71B Missense_Mutation p.P250S 0.46 tolerated(0.34) benign(0) TCGA-QC-A7B5-01 5 157178427 157178427 C T LSM11 Missense_Mutation p.H160Y 0.34 tolerated(0.39) benign(0.303) TCGA-QC-A7B5-01 5 157216408 157216408 G A CLINT1 Silent p.P516P 0.30 TCGA-QC-A7B5-01 5 157216507 157216507 G A CLINT1 Silent p.V483V 0.21 TCGA-QC-A7B5-01 5 15939193 15939193 G A FBXL7 3'UTR 0.46 TCGA-QC-A7B5-01 5 15939194 15939194 G A FBXL7 3'UTR 0.46 TCGA-QC-A7B5-01 5 159491941 159491941 A T TTC1 Nonsense_Mutation p.K250* 0.36 TCGA-QC-A7B5-01 5 159776033 159776033 G A C1QTNF2 3'UTR 0.19 TCGA-QC-A7B5-01 5 161113237 161113237 C T GABRA6 Silent p.L14L 0.16 TCGA-QC-A7B5-01 5 161325926 161325926 G A GABRA1 3'UTR 0.34 TCGA-QC-A7B5-01 5 161580811 161580811 A C GABRG2 3'UTR 0.25 TCGA-QC-A7B5-01 5 166711897 166711897 G A TENM2 Missense_Mutation p.E19K 0.17 deleterious_low_confidence(0) benign(0.187) TCGA-QC-A7B5-01 5 167850770 167850770 G A WWC1 Missense_Mutation p.E503K 0.48 deleterious(0.03) possibly_damaging(0.9) TCGA-QC-A7B5-01 5 167929064 167929064 C T RARS Silent p.F337F 0.35 TCGA-QC-A7B5-01 5 168244462 168244462 G A SLIT3 Silent p.L212L 0.26 TCGA-QC-A7B5-01 5 169309827 169309827 G A FAM196B Missense_Mutation p.A359V 0.42 tolerated(0.17) benign(0.006) TCGA-QC-A7B5-01 5 169446040 169446040 C T DOCK2 Silent p.L1103L 0.43 TCGA-QC-A7B5-01 5 169446041 169446041 C T DOCK2 Missense_Mutation p.R1104W 0.40 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 5 170883570 170883570 T C FGF18 Missense_Mutation p.F129L 0.28 deleterious(0) probably_damaging(0.91) TCGA-QC-A7B5-01 5 174156475 174156475 G A MSX2 Silent p.Q231Q 0.30 TCGA-QC-A7B5-01 5 174156476 174156476 G A MSX2 Missense_Mutation p.A232T 0.30 tolerated(0.05) benign(0.056) TCGA-QC-A7B5-01 5 175387067 175387067 G A THOC3 Silent p.L321L 0.22 TCGA-QC-A7B5-01 5 176026413 176026413 G A GPRIN1 Silent p.S141S 0.35 TCGA-QC-A7B5-01 5 176070156 176070156 C T EIF4E1B Missense_Mutation p.P30L 0.36 tolerated(0.69) benign(0.04) TCGA-QC-A7B5-01 5 176492637 176492637 C T ZNF346 3'UTR 0.25 TCGA-QC-A7B5-01 5 176721767 176721767 G A NSD1 Silent p.K2466K 0.35 TCGA-QC-A7B5-01 5 176894047 176894047 C T DBN1 Missense_Mutation p.R193Q 0.41 deleterious(0) probably_damaging(0.992) TCGA-QC-A7B5-01 5 177310736 177310736 C T RP11-423H2.1 RNA 0.20 TCGA-QC-A7B5-01 5 178039426 178039426 C T CLK4 Missense_Mutation p.V348I 0.33 deleterious(0.02) benign(0.188) TCGA-QC-A7B5-01 5 178039427 178039427 C T CLK4 Silent p.E347E 0.33 TCGA-QC-A7B5-01 5 178358281 178358281 G A ZFP2 5'UTR 0.31 TCGA-QC-A7B5-01 5 178413706 178413706 G A GRM6 Silent p.L517L 0.39 TCGA-QC-A7B5-01 5 178541189 178541189 C T ADAMTS2 Silent p.R1105R 0.39 TCGA-QC-A7B5-01 5 179390555 179390555 A G RNF130 Missense_Mutation p.F387S 0.41 deleterious_low_confidence(0.02) benign(0.313) TCGA-QC-A7B5-01 5 179564927 179564927 G A RASGEF1C Silent p.S42S 0.45 TCGA-QC-A7B5-01 5 180582383 180582383 G A OR2V2 Silent p.G147G 0.14 TCGA-QC-A7B5-01 5 21817074 21817074 C T CDH12 Missense_Mutation p.G328R 0.23 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 5 22142675 22142675 G T CDH12 Intron 0.38 TCGA-QC-A7B5-01 5 23526341 23526341 G A PRDM9 Splice_Site p.X382_splice 0.13 TCGA-QC-A7B5-01 5 26903850 26903850 C T CDH9 Missense_Mutation p.E299K 0.27 tolerated(0.43) benign(0.002) TCGA-QC-A7B5-01 5 31508871 31508871 C T DROSHA Missense_Mutation p.E482K 0.14 tolerated(0.38) benign(0.09) TCGA-QC-A7B5-01 5 33684046 33684046 G A ADAMTS12 Missense_Mutation p.T250I 0.27 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 5 33982499 33982499 C T SLC45A2 Missense_Mutation p.R135K 0.43 tolerated(1) benign(0.008) TCGA-QC-A7B5-01 5 33984600 33984600 C T SLC45A2 Missense_Mutation p.R30K 0.35 deleterious(0.04) benign(0.176) TCGA-QC-A7B5-01 5 36114598 36114598 G A LMBRD2 Missense_Mutation p.S523F 0.30 deleterious(0.01) possibly_damaging(0.649) TCGA-QC-A7B5-01 5 36137496 36137496 G A LMBRD2 Missense_Mutation p.S139F 0.23 deleterious(0) probably_damaging(0.975) TCGA-QC-A7B5-01 5 36876946 36876946 C T NIPBL 5'UTR 0.47 TCGA-QC-A7B5-01 5 37169560 37169560 G A C5orf42 Missense_Mutation p.P2189L 0.38 tolerated(0.09) benign(0.045) TCGA-QC-A7B5-01 5 38962592 38962592 G T RICTOR Missense_Mutation p.L555I 0.37 tolerated(0.08) probably_damaging(0.998) TCGA-QC-A7B5-01 5 39153563 39153563 G A FYB Missense_Mutation p.P437S 0.33 tolerated(1) benign(0.01) TCGA-QC-A7B5-01 5 41149432 41149432 C T C6 Nonsense_Mutation p.W845* 0.09 TCGA-QC-A7B5-01 5 41911190 41911190 C T C5orf51 Missense_Mutation p.S132F 0.40 tolerated(0.15) possibly_damaging(0.52) TCGA-QC-A7B5-01 5 45262298 45262298 G A HCN1 Silent p.L800L 0.50 TCGA-QC-A7B5-01 5 49699285 49699285 G A EMB Missense_Mutation p.P202S 0.24 tolerated(0.07) possibly_damaging(0.73) TCGA-QC-A7B5-01 5 54456137 54456137 C T GPX8 Silent p.F39F 0.42 TCGA-QC-A7B5-01 5 54456138 54456138 C T GPX8 Missense_Mutation p.L40F 0.42 tolerated(0.79) benign(0.002) TCGA-QC-A7B5-01 5 54654445 54654445 G A SKIV2L2 Silent p.R526R 0.10 TCGA-QC-A7B5-01 5 56216426 56216426 C T MIER3 3'UTR 0.33 TCGA-QC-A7B5-01 5 56218601 56218601 C T MIER3 3'UTR 0.27 TCGA-QC-A7B5-01 5 56777818 56777818 C G ACTBL2 Silent p.R239R 0.38 TCGA-QC-A7B5-01 5 56777819 56777819 C T ACTBL2 Missense_Mutation p.R239Q 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.553) TCGA-QC-A7B5-01 5 60839860 60839860 C T ZSWIM6 Missense_Mutation p.H1122Y 0.16 tolerated(1) possibly_damaging(0.491) TCGA-QC-A7B5-01 5 64920826 64920826 C T CTC-534A2.2 5'UTR 0.27 TCGA-QC-A7B5-01 5 6756376 6756376 C T PAPD7 3'UTR 0.35 TCGA-QC-A7B5-01 5 6756377 6756377 C T PAPD7 3'UTR 0.34 TCGA-QC-A7B5-01 5 67590975 67590975 G A PIK3R1 Splice_Site p.X523_splice 0.41 TCGA-QC-A7B5-01 5 68578736 68578736 G A CCDC125 Silent p.F452F 0.30 TCGA-QC-A7B5-01 5 70810863 70810863 G A BDP1 Silent p.R1521R 0.27 TCGA-QC-A7B5-01 5 72185695 72185695 T A TNPO1 Missense_Mutation p.F538I 0.32 deleterious(0) possibly_damaging(0.688) TCGA-QC-A7B5-01 5 72185734 72185734 G A TNPO1 Missense_Mutation p.D551N 0.31 deleterious(0.01) possibly_damaging(0.69) TCGA-QC-A7B5-01 5 72370583 72370583 C T FCHO2 Missense_Mutation p.P532S 0.23 deleterious(0) benign(0.415) TCGA-QC-A7B5-01 5 73924468 73924468 G A ENC1 3'UTR 0.33 TCGA-QC-A7B5-01 5 74014762 74014762 G A HEXB Silent p.R461R 0.29 TCGA-QC-A7B5-01 5 74137459 74137459 C T FAM169A Missense_Mutation p.E15K 0.43 deleterious(0.01) possibly_damaging(0.713) TCGA-QC-A7B5-01 5 74323835 74323835 C T GCNT4 3'UTR 0.32 TCGA-QC-A7B5-01 5 75505622 75505622 C T SV2C Missense_Mutation p.R275W 0.17 deleterious(0) probably_damaging(0.997) TCGA-QC-A7B5-01 5 7827200 7827200 G A ADCY2 3'UTR 0.33 TCGA-QC-A7B5-01 5 78340285 78340285 G A DMGDH Missense_Mutation p.S279F 0.28 deleterious(0) benign(0.041) TCGA-QC-A7B5-01 5 78586063 78586063 G T JMY Missense_Mutation p.K442N 0.33 tolerated(0.48) probably_damaging(0.999) TCGA-QC-A7B5-01 5 7892992 7892992 C T MTRR Missense_Mutation p.S535F 0.44 tolerated(0.05) benign(0.169) TCGA-QC-A7B5-01 5 79025711 79025711 G A CMYA5 Missense_Mutation p.E375K 0.26 benign(0.021) TCGA-QC-A7B5-01 5 79030247 79030247 A T CMYA5 Missense_Mutation p.I1887F 0.42 probably_damaging(0.969) TCGA-QC-A7B5-01 5 79439606 79439606 G A SERINC5 Silent p.F422F 0.38 TCGA-QC-A7B5-01 5 79855095 79855095 C A ANKRD34B Missense_Mutation p.W248C 0.31 deleterious(0) probably_damaging(0.94) TCGA-QC-A7B5-01 5 80422965 80422965 G A RASGRF2 Missense_Mutation p.G890E 0.14 deleterious(0.01) probably_damaging(0.95) TCGA-QC-A7B5-01 5 82789387 82789387 G A VCAN Silent p.A156A 0.24 TCGA-QC-A7B5-01 5 82876460 82876460 G A VCAN 3'UTR 0.26 TCGA-QC-A7B5-01 5 82936726 82936726 G A HAPLN1 3'UTR 0.38 TCGA-QC-A7B5-01 5 843755 843755 G A ZDHHC11 Silent p.L196L 0.11 TCGA-QC-A7B5-01 5 85583503 85583503 G A NBPF22P RNA 0.39 TCGA-QC-A7B5-01 5 85916521 85916521 G T COX7C 3'UTR 0.44 TCGA-QC-A7B5-01 5 89969915 89969915 T G GPR98 Missense_Mutation p.N1658K 0.15 probably_damaging(0.982) TCGA-QC-A7B5-01 5 89999575 89999575 A T GPR98 Missense_Mutation p.N2750I 0.34 probably_damaging(0.979) TCGA-QC-A7B5-01 5 9063076 9063076 G A SEMA5A Missense_Mutation p.P814L 0.12 deleterious(0.02) probably_damaging(1) TCGA-QC-A7B5-01 5 93489826 93489826 C T KIAA0825 Nonsense_Mutation p.W1238* 0.25 TCGA-QC-A7B5-01 5 95729033 95729033 C A PCSK1 Missense_Mutation p.S645I 0.36 tolerated_low_confidence(0.19) benign(0.002) TCGA-QC-A7B5-01 5 96127835 96127835 G A ERAP1 Missense_Mutation p.H417Y 0.19 deleterious(0) probably_damaging(0.972) TCGA-QC-A7B5-01 5 96232462 96232462 G A ERAP2 Silent p.K466K 0.30 TCGA-QC-A7B5-01 5 96271198 96271198 G A LNPEP 5'UTR 0.47 TCGA-QC-A7B5-01 6 100016559 100016559 C T CCNC 5'UTR 0.24 TCGA-QC-A7B5-01 6 105606260 105606260 A T POPDC3 3'UTR 0.41 TCGA-QC-A7B5-01 6 107391312 107391312 C T BEND3 Silent p.E361E 0.30 TCGA-QC-A7B5-01 6 108222574 108222574 C T SEC63 Missense_Mutation p.V453M 0.16 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 6 108222575 108222575 C T SEC63 Silent p.Q452Q 0.16 TCGA-QC-A7B5-01 6 10877429 10877429 C T GCM2 Missense_Mutation p.G96D 0.18 deleterious(0) probably_damaging(0.993) TCGA-QC-A7B5-01 6 109765428 109765428 C T MICAL1 Missense_Mutation p.S1057N 0.29 tolerated(0.08) benign(0.042) TCGA-QC-A7B5-01 6 109819155 109819155 T G AK9 Missense_Mutation p.N1687T 0.14 tolerated(0.43) benign(0.293) TCGA-QC-A7B5-01 6 110514444 110514444 T C CDC40 Silent p.P83P 0.25 TCGA-QC-A7B5-01 6 11185436 11185436 G T NEDD9 Missense_Mutation p.Q822K 0.49 deleterious(0.01) benign(0.145) TCGA-QC-A7B5-01 6 11185840 11185840 C T NEDD9 Nonsense_Mutation p.W687* 0.38 TCGA-QC-A7B5-01 6 112021423 112021423 C T FYN Missense_Mutation p.G249E 0.22 tolerated(1) benign(0.024) TCGA-QC-A7B5-01 6 112421880 112421880 C T FAM229B Missense_Mutation p.R45W 0.14 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-QC-A7B5-01 6 117150000 117150000 T A GPRC6A Missense_Mutation p.Q59H 0.23 tolerated(0.12) benign(0.01) TCGA-QC-A7B5-01 6 117198534 117198534 C T RFX6 Silent p.L32L 0.15 TCGA-QC-A7B5-01 6 117203573 117203573 G A RFX6 Missense_Mutation p.G183E 0.51 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 6 117245881 117245881 C T RFX6 Silent p.A535A 0.16 TCGA-QC-A7B5-01 6 118786633 118786633 C T CEP85L Missense_Mutation p.E788K 0.12 deleterious(0.01) possibly_damaging(0.742) TCGA-QC-A7B5-01 6 119522419 119522419 G C MAN1A1 Missense_Mutation p.H404D 0.45 deleterious(0.03) benign(0.041) TCGA-QC-A7B5-01 6 121452831 121452831 G A TBC1D32 Silent p.N947N 0.22 TCGA-QC-A7B5-01 6 12164419 12164419 G A HIVEP1 Missense_Mutation p.D2628N 0.21 tolerated(0.12) benign(0.004) TCGA-QC-A7B5-01 6 121770289 121770289 C T GJA1 3'UTR 0.36 TCGA-QC-A7B5-01 6 124979363 124979363 C T NKAIN2 Missense_Mutation p.S102L 0.20 deleterious(0) possibly_damaging(0.666) TCGA-QC-A7B5-01 6 125146097 125146097 C T NKAIN2 3'UTR 0.32 TCGA-QC-A7B5-01 6 127517048 127517048 G A RSPO3 Missense_Mutation p.E239K 0.30 tolerated(0.64) benign(0.157) TCGA-QC-A7B5-01 6 127898407 127898407 C T C6orf58 Missense_Mutation p.S26L 0.37 tolerated(0.07) benign(0.176) TCGA-QC-A7B5-01 6 130413988 130413988 C T L3MBTL3 Silent p.P539P 0.28 TCGA-QC-A7B5-01 6 131201813 131201813 G T EPB41L2 Intron 0.31 TCGA-QC-A7B5-01 6 131915262 131915262 C T MED23 Missense_Mutation p.R1070K 0.29 tolerated(1) benign(0.001) TCGA-QC-A7B5-01 6 134274409 134274409 G A TBPL1 5'UTR 0.40 TCGA-QC-A7B5-01 6 134274410 134274410 G A TBPL1 5'UTR 0.40 TCGA-QC-A7B5-01 6 134495801 134495801 C T SGK1 Intron 0.38 TCGA-QC-A7B5-01 6 136599171 136599171 C T BCLAF1 Missense_Mutation p.R283Q 0.06 tolerated(0.17) benign(0.417) TCGA-QC-A7B5-01 6 138531092 138531092 G A KIAA1244 Missense_Mutation p.D89N 0.31 tolerated(0.1) benign(0.209) TCGA-QC-A7B5-01 6 1390795 1390795 C T FOXF2 Missense_Mutation p.P205S 0.33 deleterious(0.03) probably_damaging(0.99) TCGA-QC-A7B5-01 6 139225794 139225794 G A REPS1 3'Flank 0.40 TCGA-QC-A7B5-01 6 139563994 139563994 G A TXLNB Missense_Mutation p.S575F 0.32 deleterious_low_confidence(0.03) benign(0.234) TCGA-QC-A7B5-01 6 142737080 142737080 C T GPR126 Silent p.F939F 0.33 TCGA-QC-A7B5-01 6 144033200 144033200 G A PHACTR2 Missense_Mutation p.A32T 0.13 tolerated(0.16) benign(0.015) TCGA-QC-A7B5-01 6 144758851 144758851 C T UTRN Missense_Mutation p.L404F 0.36 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 6 150114782 150114782 C T PCMT1 Missense_Mutation p.S190F 0.38 deleterious(0.01) benign(0.037) TCGA-QC-A7B5-01 6 155154371 155154371 G A SCAF8 Missense_Mutation p.E1220K 0.33 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-QC-A7B5-01 6 159456827 159456827 C T TAGAP 3'UTR 0.44 TCGA-QC-A7B5-01 6 159457214 159457214 G A TAGAP Missense_Mutation p.T614I 0.35 deleterious(0.02) benign(0.012) TCGA-QC-A7B5-01 6 159687216 159687216 C T FNDC1 Silent p.F1795F 0.32 TCGA-QC-A7B5-01 6 160009865 160009865 G A RP3-393E18.2 RNA 0.28 TCGA-QC-A7B5-01 6 160182501 160182503 GAG AA ACAT2 5'UTR 0.36 TCGA-QC-A7B5-01 6 160913970 160913970 C T LPAL2 RNA 0.34 TCGA-QC-A7B5-01 6 167570891 167570891 G A GPR31 Silent p.V143V 0.20 TCGA-QC-A7B5-01 6 168463404 168463404 G A FRMD1 Intron 0.25 TCGA-QC-A7B5-01 6 170047928 170047928 G A WDR27 Missense_Mutation p.P533L 0.31 tolerated(0.83) benign(0.002) TCGA-QC-A7B5-01 6 17781058 17781058 A C KIF13A Missense_Mutation p.I1250S 0.20 deleterious(0) possibly_damaging(0.906) TCGA-QC-A7B5-01 6 17805748 17805748 G A KIF13A Silent p.D754D 0.18 TCGA-QC-A7B5-01 6 1960164 1960164 G A GMDS Missense_Mutation p.R194C 0.28 deleterious_low_confidence(0) probably_damaging(1) TCGA-QC-A7B5-01 6 1960165 1960165 G A GMDS Silent p.F193F 0.28 TCGA-QC-A7B5-01 6 19840360 19840360 T C ID4 3'UTR 0.14 TCGA-QC-A7B5-01 6 22570533 22570533 G A HDGFL1 Silent p.P243P 0.18 TCGA-QC-A7B5-01 6 25862543 25862543 G A SLC17A3 Missense_Mutation p.S74F 0.20 tolerated(0.32) benign(0.111) TCGA-QC-A7B5-01 6 26020939 26020939 G A HIST1H3A Silent p.E74E 0.19 TCGA-QC-A7B5-01 6 2623974 2623974 C T C6orf195 Missense_Mutation p.R28K 0.51 deleterious_low_confidence(0) benign(0.14) TCGA-QC-A7B5-01 6 26376812 26376812 C T BTN3A2 3'UTR 0.48 TCGA-QC-A7B5-01 6 26413041 26413041 G A BTN3A1 Intron 0.17 TCGA-QC-A7B5-01 6 26413940 26413940 C T BTN3A1 3'UTR 0.42 TCGA-QC-A7B5-01 6 26413941 26413941 C T BTN3A1 3'UTR 0.39 TCGA-QC-A7B5-01 6 26509372 26509372 C T BTN1A1 Silent p.I517I 0.60 TCGA-QC-A7B5-01 6 26638375 26638375 A T ZNF322 Missense_Mutation p.F136Y 0.21 deleterious(0.01) benign(0.221) TCGA-QC-A7B5-01 6 28543503 28543503 C T SCAND3 Missense_Mutation p.E327K 0.39 tolerated_low_confidence(0.07) benign(0.07) TCGA-QC-A7B5-01 6 28966513 28966513 G A ZNF311 Missense_Mutation p.P138L 0.23 tolerated(0.2) benign(0.012) TCGA-QC-A7B5-01 6 29231725 29231725 G A XXbac-BPG308J9.3 RNA 0.17 TCGA-QC-A7B5-01 6 29323687 29323687 C T OR5V1 Missense_Mutation p.G96R 0.20 deleterious(0.02) benign(0.038) TCGA-QC-A7B5-01 6 29364937 29364937 C T OR12D2 Missense_Mutation p.A154V 0.17 deleterious(0) possibly_damaging(0.9) TCGA-QC-A7B5-01 6 29455294 29455294 C T MAS1L Missense_Mutation p.G129E 0.19 tolerated(0.29) benign(0.069) TCGA-QC-A7B5-01 6 30522613 30522613 G A GNL1 Silent p.F152F 0.32 TCGA-QC-A7B5-01 6 30632615 30632615 C T DHX16 Missense_Mutation p.G427E 0.19 deleterious(0) unknown(0) TCGA-QC-A7B5-01 6 30918953 30918953 A T DPCR1 Silent p.G904G 0.45 TCGA-QC-A7B5-01 6 31110355 31110355 C T CCHCR1 3'UTR 0.24 TCGA-QC-A7B5-01 6 31603452 31603452 C T PRRC2A Missense_Mutation p.P1823S 0.36 unknown(0) TCGA-QC-A7B5-01 6 31603453 31603453 C T PRRC2A Missense_Mutation p.P1823L 0.35 unknown(0) TCGA-QC-A7B5-01 6 31628398 31628398 C T C6orf47 5'UTR 0.56 TCGA-QC-A7B5-01 6 31628399 31628399 C T C6orf47 5'UTR 0.57 TCGA-QC-A7B5-01 6 31691544 31691544 C T C6orf25 Silent p.L64L 0.26 TCGA-QC-A7B5-01 6 31735445 31735445 G A VWA7 Silent p.V530V 0.17 TCGA-QC-A7B5-01 6 31926889 31926889 C T SKIV2L 5'UTR 0.18 TCGA-QC-A7B5-01 6 32017184 32017184 G A TNXB 5'Flank 0.55 TCGA-QC-A7B5-01 6 32017346 32017346 G A TNXB 5'Flank 0.60 TCGA-QC-A7B5-01 6 32017937 32017937 G A TNXB 5'Flank 0.20 TCGA-QC-A7B5-01 6 32017938 32017938 G A TNXB 5'Flank 0.20 TCGA-QC-A7B5-01 6 32116627 32116627 G A PRRT1 3'UTR 0.38 TCGA-QC-A7B5-01 6 32150476 32150476 C T AGER Splice_Site p.X231_splice 0.31 TCGA-QC-A7B5-01 6 32181931 32181931 G A NOTCH4 Missense_Mutation p.P708L 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-QC-A7B5-01 6 32487164 32487164 G A HLA-DRB5 Missense_Mutation p.P212L 0.35 deleterious(0) probably_damaging(0.915) TCGA-QC-A7B5-01 6 32548563 32548563 G A HLA-DRB1 Silent p.F241F 0.17 TCGA-QC-A7B5-01 6 32729657 32729657 C G HLA-DQB2 Silent p.G48G 0.24 TCGA-QC-A7B5-01 6 32939437 32939437 C T BRD2 5'UTR 0.41 TCGA-QC-A7B5-01 6 32975249 32975249 C T HLA-DOA Missense_Mutation p.G151D 0.44 deleterious(0.01) probably_damaging(0.914) TCGA-QC-A7B5-01 6 33136329 33136329 C T COL11A2 Silent p.G1223G 0.35 TCGA-QC-A7B5-01 6 33136330 33136330 C T COL11A2 Missense_Mutation p.G1223E 0.35 unknown(0) TCGA-QC-A7B5-01 6 33144520 33144520 G A COL11A2 Missense_Mutation p.P612L 0.33 possibly_damaging(0.851) TCGA-QC-A7B5-01 6 33157101 33157101 G A COL11A2 Silent p.F76F 0.26 TCGA-QC-A7B5-01 6 33157204 33157204 G A COL11A2 Missense_Mutation p.S42F 0.25 possibly_damaging(0.851) TCGA-QC-A7B5-01 6 33171585 33171585 G A SLC39A7 Missense_Mutation p.E469K 0.35 deleterious(0) probably_damaging(0.971) TCGA-QC-A7B5-01 6 33283754 33283754 G A ZBTB22 Missense_Mutation p.P314S 0.19 tolerated_low_confidence(0.37) benign(0.001) TCGA-QC-A7B5-01 6 33752145 33752145 G A LEMD2 Silent p.F279F 0.41 TCGA-QC-A7B5-01 6 34496562 34496562 C T PACSIN1 Missense_Mutation p.H122Y 0.13 deleterious(0) benign(0.087) TCGA-QC-A7B5-01 6 34803228 34803228 C T UHRF1BP1 Missense_Mutation p.P276L 0.23 deleterious(0) probably_damaging(0.937) TCGA-QC-A7B5-01 6 34827037 34827037 C T UHRF1BP1 Silent p.G968G 0.16 TCGA-QC-A7B5-01 6 34827038 34827038 C T UHRF1BP1 Missense_Mutation p.H969Y 0.15 tolerated(0.65) benign(0.007) TCGA-QC-A7B5-01 6 35211404 35211404 A G SCUBE3 Missense_Mutation p.Q648R 0.17 tolerated(0.18) benign(0.281) TCGA-QC-A7B5-01 6 35436188 35436188 C T RPL10A 5'UTR 0.28 TCGA-QC-A7B5-01 6 35773750 35773750 G A LHFPL5 Silent p.V101V 0.39 TCGA-QC-A7B5-01 6 35838094 35838094 C T SRPK1 Missense_Mutation p.E319K 0.19 tolerated(0.25) benign(0.084) TCGA-QC-A7B5-01 6 35838095 35838095 T A SRPK1 Missense_Mutation p.K318N 0.21 tolerated(0.17) benign(0.017) TCGA-QC-A7B5-01 6 36870121 36870121 G A C6orf89 Missense_Mutation p.R112K 0.49 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 6 37299031 37299031 C T TBC1D22B 3'UTR 0.36 TCGA-QC-A7B5-01 6 38690730 38690730 C T DNAH8 5'Flank 0.20 TCGA-QC-A7B5-01 6 38749101 38749101 G A DNAH8 Nonsense_Mutation p.W520* 0.45 TCGA-QC-A7B5-01 6 38835889 38835889 G A DNAH8 Missense_Mutation p.G2032R 0.17 probably_damaging(1) TCGA-QC-A7B5-01 6 38835890 38835890 G A DNAH8 Missense_Mutation p.G2032E 0.17 probably_damaging(1) TCGA-QC-A7B5-01 6 38976618 38976618 C T DNAH8 Missense_Mutation p.L4198F 0.47 possibly_damaging(0.666) TCGA-QC-A7B5-01 6 39025329 39025329 C T GLP1R Missense_Mutation p.P86L 0.18 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 6 39159488 39159488 G A KCNK5 Silent p.F226F 0.16 TCGA-QC-A7B5-01 6 39159496 39159496 G A KCNK5 Missense_Mutation p.R224C 0.17 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 6 39162039 39162039 G A KCNK5 Silent p.F180F 0.18 TCGA-QC-A7B5-01 6 39282582 39282582 G A KCNK16 3'Flank 0.35 TCGA-QC-A7B5-01 6 4087831 4087831 C T C6orf201 5'UTR 0.42 TCGA-QC-A7B5-01 6 4087832 4087832 C T C6orf201 5'UTR 0.42 TCGA-QC-A7B5-01 6 41566860 41566860 C A FOXP4 3'UTR 0.24 TCGA-QC-A7B5-01 6 42130881 42130881 A T RP1-139D8.6 Missense_Mutation p.Y93F 0.18 deleterious(0.02) possibly_damaging(0.646) TCGA-QC-A7B5-01 6 42854258 42854258 C T RPL7L1 3'UTR 0.18 TCGA-QC-A7B5-01 6 43152478 43152478 C T CUL9 Missense_Mutation p.H144Y 0.45 deleterious(0) probably_damaging(0.977) TCGA-QC-A7B5-01 6 43250565 43250565 G A TTBK1 Missense_Mutation p.R696Q 0.43 possibly_damaging(0.564) TCGA-QC-A7B5-01 6 43305569 43305569 G A ZNF318 Missense_Mutation p.S2056F 0.41 benign(0.317) TCGA-QC-A7B5-01 6 43472881 43472881 C T TJAP1 Missense_Mutation p.P321L 0.40 tolerated(0.06) benign(0.056) TCGA-QC-A7B5-01 6 43491445 43491445 T C XPO5 3'UTR 0.31 TCGA-QC-A7B5-01 6 43491446 43491446 C A XPO5 3'UTR 0.31 TCGA-QC-A7B5-01 6 44137153 44137153 G A CAPN11 Missense_Mutation p.R75K 0.22 tolerated(0.37) benign(0.003) TCGA-QC-A7B5-01 6 44394440 44394440 C T CDC5L Silent p.F624F 0.24 TCGA-QC-A7B5-01 6 45880444 45880444 G A CLIC5 Intron 0.16 TCGA-QC-A7B5-01 6 46977164 46977164 G A GPR110 Silent p.L669L 0.14 TCGA-QC-A7B5-01 6 50718997 50718997 A C TFAP2D Missense_Mutation p.I367L 0.14 deleterious(0.03) benign(0.088) TCGA-QC-A7B5-01 6 50810895 50810895 C T TFAP2B Silent p.I391I 0.29 TCGA-QC-A7B5-01 6 51890774 51890774 G A PKHD1 Silent p.F1278F 0.31 TCGA-QC-A7B5-01 6 54185424 54185424 G A TINAG Missense_Mutation p.E135K 0.14 tolerated(0.09) benign(0.008) TCGA-QC-A7B5-01 6 55147026 55147026 A T HCRTR2 Missense_Mutation p.K370I 0.19 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 6 55739214 55739214 A C BMP5 Missense_Mutation p.F150L 0.15 deleterious(0.03) possibly_damaging(0.58) TCGA-QC-A7B5-01 6 56480985 56480985 A G DST Intron 0.22 TCGA-QC-A7B5-01 6 64408446 64408446 A G PHF3 Missense_Mutation p.K978R 0.41 deleterious(0.04) probably_damaging(0.999) TCGA-QC-A7B5-01 6 64694463 64694463 G A EYS Missense_Mutation p.P2290S 0.12 tolerated(0.29) possibly_damaging(0.595) TCGA-QC-A7B5-01 6 65327426 65327426 C T EYS Missense_Mutation p.G1190E 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-QC-A7B5-01 6 65327427 65327427 C T EYS Splice_Site p.X1190_splice 0.14 TCGA-QC-A7B5-01 6 69665971 69665971 G A BAI3 Silent p.S417S 0.19 TCGA-QC-A7B5-01 6 69684677 69684677 G A BAI3 Silent p.E516E 0.10 TCGA-QC-A7B5-01 6 69949033 69949033 G A BAI3 Missense_Mutation p.R910K 0.19 deleterious(0) probably_damaging(0.987) TCGA-QC-A7B5-01 6 70935701 70935701 C T COL9A1 Missense_Mutation p.E839K 0.24 probably_damaging(0.955) TCGA-QC-A7B5-01 6 71298512 71298512 C T C6orf57 3'UTR 0.22 TCGA-QC-A7B5-01 6 73110613 73110613 T C RIMS1 3'Flank 0.25 TCGA-QC-A7B5-01 6 73112094 73112094 C T RIMS1 3'Flank 0.37 TCGA-QC-A7B5-01 6 74072498 74072498 C T KHDC3L Missense_Mutation p.P16S 0.17 deleterious(0.02) benign(0.291) TCGA-QC-A7B5-01 6 74498282 74498282 C T CD109 Missense_Mutation p.S883L 0.19 deleterious(0) benign(0.382) TCGA-QC-A7B5-01 6 75884929 75884929 G A COL12A1 Silent p.L845L 0.25 TCGA-QC-A7B5-01 6 7845455 7845455 G T BMP6 Missense_Mutation p.E249D 0.22 deleterious(0.03) probably_damaging(0.985) TCGA-QC-A7B5-01 6 79707142 79707142 A G PHIP Silent p.A730A 0.39 TCGA-QC-A7B5-01 6 81053561 81053562 GC T BCKDHB 3'UTR 0.15 TCGA-QC-A7B5-01 6 83832631 83832633 CTT - DOPEY1 In_Frame_Del p.L425del 0.53 TCGA-QC-A7B5-01 6 84233768 84233768 C T PRSS35 Missense_Mutation p.S203F 0.22 deleterious(0.01) probably_damaging(0.914) TCGA-QC-A7B5-01 6 84234540 84234540 G A PRSS35 3'UTR 0.27 TCGA-QC-A7B5-01 6 88128033 88128033 G A C6ORF165 Missense_Mutation p.A247T 0.57 tolerated(0.43) benign(0.102) TCGA-QC-A7B5-01 6 89907897 89907897 G A GABRR1 Silent p.T138T 0.14 TCGA-QC-A7B5-01 6 89907898 89907898 G A GABRR1 Missense_Mutation p.T138I 0.14 tolerated(0.21) benign(0.047) TCGA-QC-A7B5-01 6 90333758 90333758 G A ANKRD6 Silent p.K400K 0.40 TCGA-QC-A7B5-01 6 90402569 90402569 G A MDN1 Missense_Mutation p.P3394S 0.12 probably_damaging(0.98) TCGA-QC-A7B5-01 6 90636897 90636897 G A BACH2 3'UTR 0.25 TCGA-QC-A7B5-01 6 90638551 90638551 G A BACH2 3'UTR 0.46 TCGA-QC-A7B5-01 6 93951729 93951729 A G EPHA7 3'UTR 0.46 TCGA-QC-A7B5-01 6 93952954 93952954 C T EPHA7 3'UTR 0.15 TCGA-QC-A7B5-01 6 96655926 96655926 C T FUT9 3'UTR 0.44 TCGA-QC-A7B5-01 6 96657151 96657151 C T FUT9 3'UTR 0.38 TCGA-QC-A7B5-01 6 96657776 96657776 A C FUT9 3'UTR 0.24 TCGA-QC-A7B5-01 6 96660115 96660115 A G FUT9 3'UTR 0.38 TCGA-QC-A7B5-01 6 96663304 96663304 G A FUT9 3'UTR 0.42 TCGA-QC-A7B5-01 6 97063567 97063567 C T FHL5 Silent p.S258S 0.34 TCGA-QC-A7B5-01 6 99374682 99374682 G A FBXL4 Silent p.F61F 0.38 TCGA-QC-A7B5-01 7 100202811 100202811 C T PCOLCE Silent p.S187S 0.24 TCGA-QC-A7B5-01 7 100284304 100284304 C T GIGYF1 Missense_Mutation p.R221Q 0.45 deleterious(0.01) unknown(0) TCGA-QC-A7B5-01 7 100350371 100350371 C T ZAN Silent p.P881P 0.28 TCGA-QC-A7B5-01 7 100551440 100551440 C T MUC3A Missense_Mutation p.S64F 0.30 tolerated(0.08) benign(0.004) TCGA-QC-A7B5-01 7 100552220 100552220 G A MUC3A Missense_Mutation p.G324E 0.19 tolerated(1) benign(0.029) TCGA-QC-A7B5-01 7 100677806 100677806 C T MUC17 Missense_Mutation p.P1037S 0.30 possibly_damaging(0.641) TCGA-QC-A7B5-01 7 100677807 100677807 C T MUC17 Missense_Mutation p.P1037L 0.30 possibly_damaging(0.713) TCGA-QC-A7B5-01 7 102147197 102147197 C T RASA4B Missense_Mutation p.E125K 0.17 tolerated(0.18) possibly_damaging(0.637) TCGA-QC-A7B5-01 7 102517933 102517933 C T FBXL13 Missense_Mutation p.G539E 0.34 deleterious(0) probably_damaging(0.96) TCGA-QC-A7B5-01 7 103008415 103008415 G C PSMC2 Missense_Mutation p.E406Q 0.45 tolerated(0.61) probably_damaging(0.998) TCGA-QC-A7B5-01 7 103236958 103236958 C T RELN Missense_Mutation p.G1162S 0.46 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 7 103301975 103301975 C T RELN Splice_Site p.X430_splice 0.42 TCGA-QC-A7B5-01 7 107357928 107357928 G A SLC26A4 3'UTR 0.33 TCGA-QC-A7B5-01 7 107824989 107824989 C T NRCAM Missense_Mutation p.G702E 0.36 deleterious(0) probably_damaging(0.942) TCGA-QC-A7B5-01 7 111398800 111398800 G A DOCK4 Silent p.V1394V 0.15 TCGA-QC-A7B5-01 7 111927053 111927053 G A ZNF277 Missense_Mutation p.D73N 0.29 tolerated(0.18) possibly_damaging(0.875) TCGA-QC-A7B5-01 7 112412839 112412839 C T TMEM168 Missense_Mutation p.A515T 0.29 tolerated(0.16) probably_damaging(0.929) TCGA-QC-A7B5-01 7 113518323 113518323 C T PPP1R3A Missense_Mutation p.A942T 0.22 tolerated(0.63) benign(0) TCGA-QC-A7B5-01 7 113519545 113519545 G A PPP1R3A Silent p.F534F 0.42 TCGA-QC-A7B5-01 7 113519973 113519973 C T PPP1R3A Missense_Mutation p.E392K 0.39 tolerated(0.54) benign(0.006) TCGA-QC-A7B5-01 7 115874652 115874652 G A TES Missense_Mutation p.G31E 0.17 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 7 116199416 116199416 G A CAV1 3'UTR 0.24 TCGA-QC-A7B5-01 7 11676079 11676079 T C THSD7A Missense_Mutation p.N234D 0.26 tolerated(0.1) benign(0.241) TCGA-QC-A7B5-01 7 116918430 116918430 C T WNT2 Missense_Mutation p.G288S 0.32 deleterious(0.02) probably_damaging(1) TCGA-QC-A7B5-01 7 116918431 116918431 C T WNT2 Silent p.L287L 0.31 TCGA-QC-A7B5-01 7 117227801 117227801 C T CFTR Silent p.S531S 0.39 TCGA-QC-A7B5-01 7 117235015 117235015 C T CFTR Missense_Mutation p.P841L 0.35 tolerated(0.69) possibly_damaging(0.573) TCGA-QC-A7B5-01 7 117304782 117304782 T A CFTR Missense_Mutation p.L1335H 0.24 deleterious(0) probably_damaging(0.997) TCGA-QC-A7B5-01 7 117351075 117351075 G A CTTNBP2 3'UTR 0.12 TCGA-QC-A7B5-01 7 119915568 119915568 C T KCND2 Silent p.V294V 0.44 TCGA-QC-A7B5-01 7 121650587 121650587 C T PTPRZ1 Missense_Mutation p.P496L 0.17 tolerated(0.86) benign(0.005) TCGA-QC-A7B5-01 7 122130334 122130334 G A CADPS2 Silent p.G551G 0.10 TCGA-QC-A7B5-01 7 123277239 123277239 G A ASB15 3'UTR 0.17 TCGA-QC-A7B5-01 7 123296237 123296237 G A LMOD2 Missense_Mutation p.E74K 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-QC-A7B5-01 7 123594244 123594244 G A SPAM1 Missense_Mutation p.G207E 0.44 deleterious(0) probably_damaging(0.994) TCGA-QC-A7B5-01 7 123600076 123600076 C T SPAM1 Intron 0.38 TCGA-QC-A7B5-01 7 124482955 124482955 G A POT1 Missense_Mutation p.P357S 0.30 deleterious(0.01) probably_damaging(1) TCGA-QC-A7B5-01 7 12644139 12644139 G A SCIN Missense_Mutation p.E173K 0.12 tolerated(0.88) benign(0.012) TCGA-QC-A7B5-01 7 128096093 128096093 G A HILPDA Intron 0.33 TCGA-QC-A7B5-01 7 128098178 128098178 C T HILPDA 3'UTR 0.11 TCGA-QC-A7B5-01 7 128450358 128450358 G A CCDC136 Missense_Mutation p.E656K 0.24 deleterious(0.04) benign(0.105) TCGA-QC-A7B5-01 7 128493887 128493887 C T FLNC Silent p.I2160I 0.34 TCGA-QC-A7B5-01 7 128498132 128498132 C T FLNC Silent p.S2617S 0.32 TCGA-QC-A7B5-01 7 131191021 131191021 C T PODXL Missense_Mutation p.E437K 0.37 tolerated(0.06) possibly_damaging(0.699) TCGA-QC-A7B5-01 7 132070006 132070006 G A PLXNA4 Intron 0.36 TCGA-QC-A7B5-01 7 135309966 135309966 T C NUP205 Missense_Mutation p.W1512R 0.32 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 7 136699927 136699927 G A CHRM2 Silent p.V105V 0.27 TCGA-QC-A7B5-01 7 138313074 138313074 G A SVOPL Silent p.L300L 0.33 TCGA-QC-A7B5-01 7 138601728 138601728 C T KIAA1549 Missense_Mutation p.E882K 0.39 tolerated(0.14) benign(0.003) TCGA-QC-A7B5-01 7 139801930 139801930 C T KDM7A Missense_Mutation p.G487R 0.29 deleterious(0.02) probably_damaging(0.939) TCGA-QC-A7B5-01 7 140285449 140285449 C T DENND2A Silent p.K395K 0.18 TCGA-QC-A7B5-01 7 140494226 140494226 G A BRAF Missense_Mutation p.P341L 0.14 tolerated(0.08) possibly_damaging(0.448) TCGA-QC-A7B5-01 7 141351367 141351367 G T AGK Silent p.T363T 0.34 TCGA-QC-A7B5-01 7 141420740 141420740 C T WEE2 Missense_Mutation p.S255L 0.18 tolerated(0.72) benign(0.001) TCGA-QC-A7B5-01 7 141491051 141491051 G A TAS2R5 Nonsense_Mutation p.W297* 0.20 TCGA-QC-A7B5-01 7 141758064 141758064 G A MGAM Missense_Mutation p.G1252D 0.26 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 7 14188461 14188461 G A DGKB 3'UTR 0.25 TCGA-QC-A7B5-01 7 142139758 142139758 G A TRBV7-6 Missense_Mutation p.L5F 0.13 tolerated(0.09) benign(0.105) TCGA-QC-A7B5-01 7 142364232 142364232 C T TRBV24-1 5'UTR 0.34 TCGA-QC-A7B5-01 7 142880796 142880796 C T TAS2R39 Silent p.T95T 0.36 TCGA-QC-A7B5-01 7 143051131 143051131 A C FAM131B 3'UTR 0.30 TCGA-QC-A7B5-01 7 143052428 143052428 C T FAM131B 3'UTR 0.60 TCGA-QC-A7B5-01 7 143510056 143510056 G T RP11-61L23.2 RNA 0.17 TCGA-QC-A7B5-01 7 143701182 143701182 C T OR6B1 Silent p.F31F 0.34 TCGA-QC-A7B5-01 7 143793092 143793092 G A OR2A12 Missense_Mutation p.G298R 0.42 tolerated(0.1) benign(0.13) TCGA-QC-A7B5-01 7 143826481 143826481 C T OR2A14 Silent p.S92S 0.43 TCGA-QC-A7B5-01 7 143956673 143956673 G A OR2A7 Missense_Mutation p.P17S 0.15 tolerated(1) benign(0.082) TCGA-QC-A7B5-01 7 144068308 144068308 G A ARHGEF5 Missense_Mutation p.A1196T 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-QC-A7B5-01 7 144463043 144463043 C T TPK1 Silent p.G15G 0.23 TCGA-QC-A7B5-01 7 149171627 149171627 G A ZNF746 Missense_Mutation p.P596S 0.28 tolerated_low_confidence(0.13) benign(0.005) TCGA-QC-A7B5-01 7 149250006 149250006 G A ZNF767 RNA 0.18 TCGA-QC-A7B5-01 7 149425632 149425632 C T KRBA1 Missense_Mutation p.S498F 0.11 deleterious(0) probably_damaging(0.983) TCGA-QC-A7B5-01 7 149547268 149547268 C T ZNF862 Silent p.L320L 0.22 TCGA-QC-A7B5-01 7 149558298 149558298 C T ZNF862 Silent p.I683I 0.30 TCGA-QC-A7B5-01 7 150094993 150094993 C T ZNF775 Missense_Mutation p.P475L 0.30 tolerated(0.37) benign(0.355) TCGA-QC-A7B5-01 7 150269276 150269276 G A GIMAP4 Missense_Mutation p.G40R 0.29 deleterious(0.02) probably_damaging(1) TCGA-QC-A7B5-01 7 150389535 150389535 C T GIMAP2 Missense_Mutation p.S54F 0.29 deleterious(0) possibly_damaging(0.502) TCGA-QC-A7B5-01 7 150500762 150500762 C T TMEM176A Missense_Mutation p.L133F 0.34 deleterious(0) possibly_damaging(0.582) TCGA-QC-A7B5-01 7 150500764 150500764 C T TMEM176A Silent p.L133L 0.34 TCGA-QC-A7B5-01 7 150554585 150554585 G A AOC1 Missense_Mutation p.G343R 0.20 deleterious(0.02) possibly_damaging(0.629) TCGA-QC-A7B5-01 7 150741290 150741290 C T ABCB8 Silent p.A666A 0.38 TCGA-QC-A7B5-01 7 150776005 150776005 C G FASTK Silent p.G203G 0.42 TCGA-QC-A7B5-01 7 150776010 150776010 C T FASTK Missense_Mutation p.G202S 0.43 tolerated(0.59) probably_damaging(0.999) TCGA-QC-A7B5-01 7 151871280 151871280 G A KMT2C Missense_Mutation p.L3104F 0.32 probably_damaging(0.999) TCGA-QC-A7B5-01 7 151879504 151879504 G A KMT2C Missense_Mutation p.P1814L 0.29 benign(0.211) TCGA-QC-A7B5-01 7 152552230 152552231 - T ACTR3B 3'UTR 0.26 TCGA-QC-A7B5-01 7 154677385 154677385 G A DPP6 Missense_Mutation p.G726R 0.36 tolerated(0.26) benign(0.077) TCGA-QC-A7B5-01 7 154677386 154677386 G A DPP6 Missense_Mutation p.G726E 0.36 tolerated(0.8) benign(0.001) TCGA-QC-A7B5-01 7 155101550 155101550 C T INSIG1 3'UTR 0.31 TCGA-QC-A7B5-01 7 155255673 155255673 C T EN2 3'UTR 0.27 TCGA-QC-A7B5-01 7 155473578 155473578 C T RBM33 Silent p.I181I 0.32 TCGA-QC-A7B5-01 7 157208831 157208831 C T DNAJB6 3'UTR 0.20 TCGA-QC-A7B5-01 7 157475569 157475569 C T PTPRN2 Missense_Mutation p.A617T 0.18 deleterious(0) benign(0.114) TCGA-QC-A7B5-01 7 157959837 157959837 C T PTPRN2 Silent p.K232K 0.15 TCGA-QC-A7B5-01 7 19157186 19157186 G A TWIST1 5'UTR 0.38 TCGA-QC-A7B5-01 7 19157187 19157187 G A TWIST1 5'UTR 0.38 TCGA-QC-A7B5-01 7 21553143 21553143 G A SP4 3'UTR 0.33 TCGA-QC-A7B5-01 7 21723448 21723448 G A DNAH11 Missense_Mutation p.R1843Q 0.36 benign(0.005) TCGA-QC-A7B5-01 7 22158551 22158551 C T RAPGEF5 3'UTR 0.41 TCGA-QC-A7B5-01 7 23556110 23556110 G A TRA2A Nonsense_Mutation p.R70* 0.39 TCGA-QC-A7B5-01 7 24756994 24756994 C T DFNA5 Splice_Site p.X193_splice 0.37 TCGA-QC-A7B5-01 7 24903199 24903199 G A OSBPL3 Silent p.A231A 0.35 TCGA-QC-A7B5-01 7 24903200 24903200 G A OSBPL3 Missense_Mutation p.A231V 0.35 tolerated(0.08) benign(0.006) TCGA-QC-A7B5-01 7 2578230 2578230 C T BRAT1 Missense_Mutation p.D647N 0.32 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 7 2578231 2578231 C G BRAT1 Silent p.L646L 0.32 TCGA-QC-A7B5-01 7 2703983 2703983 G A TTYH3 3'UTR 0.33 TCGA-QC-A7B5-01 7 27149779 27149779 C T HOXA3 Missense_Mutation p.E161K 0.26 deleterious(0.01) benign(0.292) TCGA-QC-A7B5-01 7 27149780 27149780 T A HOXA3 Missense_Mutation p.K160N 0.25 deleterious(0) benign(0.403) TCGA-QC-A7B5-01 7 29690807 29690807 C T ZNRF2P2 RNA 0.45 TCGA-QC-A7B5-01 7 29690808 29690808 T A ZNRF2P2 RNA 0.45 TCGA-QC-A7B5-01 7 29944100 29944100 G A WIPF3 Intron 0.10 TCGA-QC-A7B5-01 7 29944101 29944101 G A WIPF3 Intron 0.10 TCGA-QC-A7B5-01 7 30490912 30490912 G A NOD1 Silent p.A707A 0.23 TCGA-QC-A7B5-01 7 30490913 30490913 G A NOD1 Missense_Mutation p.A707V 0.23 deleterious(0) possibly_damaging(0.761) TCGA-QC-A7B5-01 7 30728566 30728566 G A CRHR2 Intron 0.12 TCGA-QC-A7B5-01 7 31877578 31877578 G A PDE1C Nonsense_Mutation p.R390* 0.14 TCGA-QC-A7B5-01 7 32623552 32623552 G A AVL9 3'UTR 0.44 TCGA-QC-A7B5-01 7 33016063 33016063 C A FKBP9 Missense_Mutation p.R219S 0.24 deleterious(0.01) probably_damaging(1) TCGA-QC-A7B5-01 7 36338743 36338743 G A EEPD1 Silent p.K546K 0.25 TCGA-QC-A7B5-01 7 39491226 39491226 C T POU6F2 Missense_Mutation p.P443L 0.18 deleterious(0) unknown(0) TCGA-QC-A7B5-01 7 39504342 39504342 G A POU6F2 3'UTR 0.32 TCGA-QC-A7B5-01 7 44244217 44244217 C T YKT6 Missense_Mutation p.S52L 0.18 tolerated(0.25) benign(0.003) TCGA-QC-A7B5-01 7 44244232 44244232 C T YKT6 Missense_Mutation p.A57V 0.10 tolerated(0.05) benign(0.021) TCGA-QC-A7B5-01 7 44269092 44269092 C T CAMK2B Missense_Mutation p.V412I 0.33 tolerated_low_confidence(0.43) benign(0) TCGA-QC-A7B5-01 7 44269093 44269093 C T CAMK2B Silent p.R411R 0.33 TCGA-QC-A7B5-01 7 44802946 44802946 G A ZMIZ2 Silent p.L598L 0.29 TCGA-QC-A7B5-01 7 46736696 46736696 C T AC011294.3 5'UTR 0.40 TCGA-QC-A7B5-01 7 46736697 46736697 C T AC011294.3 5'UTR 0.40 TCGA-QC-A7B5-01 7 4794920 4794920 C T FOXK1 Missense_Mutation p.S319F 0.10 deleterious(0.03) probably_damaging(0.993) TCGA-QC-A7B5-01 7 4820926 4820926 C T AP5Z1 Silent p.A54A 0.33 TCGA-QC-A7B5-01 7 4839007 4839007 C T RADIL 3'UTR 0.36 TCGA-QC-A7B5-01 7 48414002 48414002 G A ABCA13 Missense_Mutation p.G3731E 0.12 probably_damaging(0.984) TCGA-QC-A7B5-01 7 4862080 4862080 G A RADIL Silent p.I520I 0.35 TCGA-QC-A7B5-01 7 5104176 5104176 C T RBAK Silent p.H363H 0.33 TCGA-QC-A7B5-01 7 51150796 51150796 C T COBL Intron 0.22 TCGA-QC-A7B5-01 7 51150797 51150797 C T COBL Intron 0.21 TCGA-QC-A7B5-01 7 53104211 53104211 T A POM121L12 Missense_Mutation p.F283I 0.24 tolerated_low_confidence(0.26) possibly_damaging(0.765) TCGA-QC-A7B5-01 7 5391714 5391714 C T TNRC18 Missense_Mutation p.E1736K 0.31 possibly_damaging(0.724) TCGA-QC-A7B5-01 7 54636898 54636898 C A VSTM2A 3'UTR 0.38 TCGA-QC-A7B5-01 7 54636899 54636899 C T VSTM2A 3'UTR 0.38 TCGA-QC-A7B5-01 7 55242452 55242452 C T EGFR Missense_Mutation p.P741L 0.46 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 7 5632821 5632821 C T FSCN1 Missense_Mutation p.P85L 0.24 deleterious(0) benign(0.433) TCGA-QC-A7B5-01 7 5632822 5632822 C T FSCN1 Silent p.P85P 0.19 TCGA-QC-A7B5-01 7 6193488 6193488 G A USP42 Missense_Mutation p.G768D 0.25 tolerated(0.54) benign(0.03) TCGA-QC-A7B5-01 7 62809606 62809606 G A AC006455.1 5'UTR 0.15 TCGA-QC-A7B5-01 7 63726669 63726669 C T ZNF679 Missense_Mutation p.P220S 0.15 tolerated(0.13) benign(0.001) TCGA-QC-A7B5-01 7 64254856 64254856 C G ZNF138 5'UTR 0.16 TCGA-QC-A7B5-01 7 72178692 72178692 G A TYW1B Silent p.S45S 0.33 TCGA-QC-A7B5-01 7 72361617 72361617 C A POM121 5'UTR 0.30 TCGA-QC-A7B5-01 7 72419605 72419605 C T POM121 3'UTR 0.30 TCGA-QC-A7B5-01 7 73770747 73770747 C T CLIP2 Nonsense_Mutation p.Q271* 0.18 TCGA-QC-A7B5-01 7 75889235 75889235 C T SRRM3 Missense_Mutation p.T116I 0.20 deleterious(0.05) unknown(0) TCGA-QC-A7B5-01 7 76109854 76109854 G A DTX2 Missense_Mutation p.V10M 0.34 deleterious_low_confidence(0.05) benign(0.281) TCGA-QC-A7B5-01 7 76110035 76110035 C T DTX2 Missense_Mutation p.P70L 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-QC-A7B5-01 7 76112410 76112410 C T DTX2 Missense_Mutation p.S285F 0.50 deleterious(0.01) benign(0.336) TCGA-QC-A7B5-01 7 76941247 76941247 G A GSAP Missense_Mutation p.S795F 0.37 tolerated(0.07) probably_damaging(0.946) TCGA-QC-A7B5-01 7 82387942 82387942 T G PCLO Missense_Mutation p.K5126N 0.32 unknown(0) TCGA-QC-A7B5-01 7 82538309 82538309 C T PCLO Missense_Mutation p.E4441K 0.39 unknown(0) TCGA-QC-A7B5-01 7 82544878 82544878 G A PCLO Missense_Mutation p.L4142F 0.25 unknown(0) TCGA-QC-A7B5-01 7 82545983 82545983 C T PCLO Silent p.V3773V 0.24 TCGA-QC-A7B5-01 7 82546087 82546087 T G PCLO Missense_Mutation p.T3739P 0.55 unknown(0) TCGA-QC-A7B5-01 7 82584268 82584268 C T PCLO Missense_Mutation p.E2001K 0.50 unknown(0) TCGA-QC-A7B5-01 7 82584369 82584369 C T PCLO Missense_Mutation p.G1967E 0.22 unknown(0) TCGA-QC-A7B5-01 7 82585020 82585020 C T PCLO Missense_Mutation p.G1750E 0.15 unknown(0) TCGA-QC-A7B5-01 7 82586232 82586232 G A PCLO Missense_Mutation p.S1346L 0.38 unknown(0) TCGA-QC-A7B5-01 7 82763807 82763807 C T PCLO Missense_Mutation p.R1020K 0.17 unknown(0) TCGA-QC-A7B5-01 7 86998740 86998740 G C CROT Missense_Mutation p.R227P 0.30 deleterious(0) probably_damaging(0.99) TCGA-QC-A7B5-01 7 88962742 88962742 G A ZNF804B Missense_Mutation p.G149E 0.37 tolerated(0.1) benign(0.378) TCGA-QC-A7B5-01 7 88964800 88964800 C T ZNF804B Missense_Mutation p.S835F 0.26 tolerated(0.19) benign(0.022) TCGA-QC-A7B5-01 7 91792710 91792710 C T LRRD1 Missense_Mutation p.G603R 0.29 tolerated(0.61) benign(0.013) TCGA-QC-A7B5-01 7 92161864 92161864 G A RBM48 Splice_Site p.X150_splice 0.37 TCGA-QC-A7B5-01 7 92734957 92734957 C T SAMD9 Missense_Mutation p.E152K 0.46 tolerated(0.39) benign(0.001) TCGA-QC-A7B5-01 7 93101772 93101772 T A CALCR Missense_Mutation p.K133I 0.25 deleterious(0) benign(0.071) TCGA-QC-A7B5-01 7 93108745 93108745 G A CALCR Silent p.V60V 0.36 TCGA-QC-A7B5-01 7 93538820 93538820 A C GNGT1 Intron 0.45 TCGA-QC-A7B5-01 7 94056551 94056551 C T COL1A2 Missense_Mutation p.P1071S 0.26 unknown(0) TCGA-QC-A7B5-01 7 94295003 94295003 C T PEG10 3'UTR 0.38 TCGA-QC-A7B5-01 7 94298383 94298383 T A PEG10 3'UTR 0.17 TCGA-QC-A7B5-01 7 95657551 95657551 C T DYNC1I1 Missense_Mutation p.S362L 0.22 deleterious(0) probably_damaging(0.992) TCGA-QC-A7B5-01 7 95761192 95761192 C T SLC25A13 Missense_Mutation p.G486D 0.48 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 7 96339125 96339125 C T SHFM1 5'UTR 0.39 TCGA-QC-A7B5-01 7 97487649 97487649 G A ASNS Missense_Mutation p.P282S 0.13 tolerated(0.09) benign(0.079) TCGA-QC-A7B5-01 7 99709546 99709546 C T TAF6 Missense_Mutation p.G303E 0.23 tolerated(0.21) probably_damaging(0.976) TCGA-QC-A7B5-01 7 99955901 99955901 C T PILRB 5'UTR 0.15 TCGA-QC-A7B5-01 8 100115205 100115205 G A VPS13B Missense_Mutation p.R146Q 0.11 deleterious(0) possibly_damaging(0.602) TCGA-QC-A7B5-01 8 100286549 100286549 C T VPS13B Missense_Mutation p.A880V 0.37 tolerated(0.56) possibly_damaging(0.739) TCGA-QC-A7B5-01 8 101065132 101065132 G A RGS22 Silent p.L529L 0.09 TCGA-QC-A7B5-01 8 103661887 103661887 G A KLF10 3'UTR 0.28 TCGA-QC-A7B5-01 8 104145533 104145533 T C C8orf56 Missense_Mutation p.R14G 0.27 unknown(0) TCGA-QC-A7B5-01 8 104432637 104432637 G T DCAF13 Missense_Mutation p.L224F 0.37 tolerated(0.06) benign(0.139) TCGA-QC-A7B5-01 8 10465862 10465862 G A RP1L1 Nonsense_Mutation p.Q1916* 0.30 TCGA-QC-A7B5-01 8 10465863 10465863 G A RP1L1 Silent p.A1915A 0.31 TCGA-QC-A7B5-01 8 10468038 10468038 C T RP1L1 Silent p.T1190T 0.45 TCGA-QC-A7B5-01 8 10480423 10480423 C T RP1L1 Missense_Mutation p.E97K 0.13 probably_damaging(0.91) TCGA-QC-A7B5-01 8 105263957 105263957 C T RIMS2 Missense_Mutation p.S1320F 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-QC-A7B5-01 8 105361403 105361403 C T DCSTAMP Missense_Mutation p.S208F 0.35 deleterious(0.01) possibly_damaging(0.863) TCGA-QC-A7B5-01 8 105509592 105509592 A C LRP12 Missense_Mutation p.D396E 0.15 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 8 10754153 10754153 G A XKR6 3'UTR 0.10 TCGA-QC-A7B5-01 8 10754326 10754326 C T XKR6 3'UTR 0.22 TCGA-QC-A7B5-01 8 10754699 10754699 G A XKR6 3'UTR 0.22 TCGA-QC-A7B5-01 8 110439312 110439312 G A PKHD1L1 Missense_Mutation p.R976Q 0.16 deleterious(0.03) benign(0.005) TCGA-QC-A7B5-01 8 110471921 110471921 G A PKHD1L1 Missense_Mutation p.G2368R 0.32 tolerated(0.06) probably_damaging(0.979) TCGA-QC-A7B5-01 8 11058318 11058318 C T XKR6 Silent p.Q177Q 0.11 TCGA-QC-A7B5-01 8 113299463 113299463 C T CSMD3 Missense_Mutation p.G3054E 0.24 deleterious(0.01) benign(0.211) TCGA-QC-A7B5-01 8 113323300 113323300 G A CSMD3 Nonsense_Mutation p.R2598* 0.48 TCGA-QC-A7B5-01 8 113358374 113358374 G A CSMD3 Missense_Mutation p.P2132S 0.25 deleterious(0) possibly_damaging(0.643) TCGA-QC-A7B5-01 8 113655780 113655780 A C CSMD3 Intron 0.33 TCGA-QC-A7B5-01 8 113694682 113694682 G A CSMD3 Missense_Mutation p.P889L 0.21 tolerated(0.33) probably_damaging(1) TCGA-QC-A7B5-01 8 121706083 121706083 C T SNTB1 Missense_Mutation p.E213K 0.30 tolerated(0.07) possibly_damaging(0.889) TCGA-QC-A7B5-01 8 124268229 124268229 C T ZHX1 5'UTR 0.33 TCGA-QC-A7B5-01 8 125989596 125989596 G A ZNF572 Silent p.E362E 0.24 TCGA-QC-A7B5-01 8 131129212 131129212 C T ASAP1 Missense_Mutation p.G637E 0.22 deleterious(0) possibly_damaging(0.902) TCGA-QC-A7B5-01 8 131130867 131130867 C T ASAP1 Silent p.R554R 0.42 TCGA-QC-A7B5-01 8 133923744 133923744 C T TG Silent p.I1375I 0.26 TCGA-QC-A7B5-01 8 135596113 135596113 C T ZFAT Missense_Mutation p.G950E 0.38 tolerated(0.12) probably_damaging(0.909) TCGA-QC-A7B5-01 8 135596114 135596114 C A ZFAT Missense_Mutation p.G950W 0.37 deleterious(0.04) probably_damaging(0.967) TCGA-QC-A7B5-01 8 139143863 139143863 C T FAM135B 3'UTR 0.22 TCGA-QC-A7B5-01 8 139164548 139164548 G A FAM135B Missense_Mutation p.H724Y 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-QC-A7B5-01 8 139601522 139601522 G A COL22A1 Missense_Mutation p.R1619W 0.44 unknown(0) TCGA-QC-A7B5-01 8 139838954 139838954 G A COL22A1 Missense_Mutation p.R306W 0.11 unknown(0) TCGA-QC-A7B5-01 8 142450467 142450467 G A CTD-3064M3.7 3'Flank 0.14 TCGA-QC-A7B5-01 8 144407684 144407684 T C TOP1MT Missense_Mutation p.E168G 0.26 deleterious(0.02) possibly_damaging(0.782) TCGA-QC-A7B5-01 8 144733164 144733164 C T ZNF623 Silent p.L374L 0.36 TCGA-QC-A7B5-01 8 144734206 144734206 C T ZNF623 3'UTR 0.54 TCGA-QC-A7B5-01 8 144803581 144803581 G A MAPK15 Missense_Mutation p.E402K 0.12 tolerated(0.56) benign(0.121) TCGA-QC-A7B5-01 8 144803783 144803783 C T MAPK15 Silent p.L423L 0.27 TCGA-QC-A7B5-01 8 144807387 144807387 G A FAM83H 3'UTR 0.36 TCGA-QC-A7B5-01 8 144807388 144807388 G A FAM83H 3'UTR 0.35 TCGA-QC-A7B5-01 8 144873297 144873297 G A SCRIB 3'UTR 0.33 TCGA-QC-A7B5-01 8 144946875 144946875 C T EPPK1 Missense_Mutation p.E183K 0.27 possibly_damaging(0.67) TCGA-QC-A7B5-01 8 144991328 144991328 G A PLEC Nonsense_Mutation p.Q4358* 0.18 TCGA-QC-A7B5-01 8 144991329 144991329 G A PLEC Silent p.D4357D 0.18 TCGA-QC-A7B5-01 8 144996492 144996492 C A PLEC Missense_Mutation p.K2636N 0.36 probably_damaging(0.954) TCGA-QC-A7B5-01 8 145140974 145140974 C A GPAA1 Silent p.S604S 0.50 TCGA-QC-A7B5-01 8 145616617 145616617 C T ADCK5 Silent p.L247L 0.29 TCGA-QC-A7B5-01 8 145616618 145616618 C T ADCK5 Silent p.L248L 0.29 TCGA-QC-A7B5-01 8 145659074 145659074 G A TONSL Silent p.L1152L 0.24 TCGA-QC-A7B5-01 8 145694172 145694172 C T KIFC2 Silent p.T356T 0.29 TCGA-QC-A7B5-01 8 145749572 145749572 G A LRRC24 Missense_Mutation p.L177F 0.50 deleterious(0) probably_damaging(0.997) TCGA-QC-A7B5-01 8 1497302 1497302 G A DLGAP2 Missense_Mutation p.R148Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-QC-A7B5-01 8 16978058 16978058 C T MICU3 3'UTR 0.40 TCGA-QC-A7B5-01 8 17206510 17206510 C T MTMR7 Silent p.R183R 0.19 TCGA-QC-A7B5-01 8 17406327 17406327 C T SLC7A2 Missense_Mutation p.L265F 0.30 tolerated(0.17) benign(0.093) TCGA-QC-A7B5-01 8 17731905 17731905 G A FGL1 Nonsense_Mutation p.Q124* 0.24 TCGA-QC-A7B5-01 8 182438 182438 G A ZNF596 5'UTR 0.34 TCGA-QC-A7B5-01 8 1871129 1871129 G A ARHGEF10 Splice_Site p.X715_splice 0.32 TCGA-QC-A7B5-01 8 19709434 19709434 A T INTS10 3'UTR 0.33 TCGA-QC-A7B5-01 8 19709436 19709436 C T INTS10 3'UTR 0.32 TCGA-QC-A7B5-01 8 21767346 21767346 C T DOK2 Missense_Mutation p.E239K 0.26 deleterious(0) probably_damaging(0.929) TCGA-QC-A7B5-01 8 22006032 22006032 G A LGI3 Missense_Mutation p.R430C 0.48 deleterious(0) possibly_damaging(0.744) TCGA-QC-A7B5-01 8 22084398 22084398 G A PHYHIP Silent p.S102S 0.36 TCGA-QC-A7B5-01 8 22481521 22481521 G A BIN3 Silent p.A174A 0.24 TCGA-QC-A7B5-01 8 23003268 23003268 C T TNFRSF10D Missense_Mutation p.V217M 0.44 tolerated(0.19) possibly_damaging(0.467) TCGA-QC-A7B5-01 8 23112765 23112765 G A CHMP7 Silent p.K159K 0.32 TCGA-QC-A7B5-01 8 23155618 23155618 C T LOXL2 Missense_Mutation p.E755K 0.33 deleterious(0.02) possibly_damaging(0.77) TCGA-QC-A7B5-01 8 27094347 27094347 C T STMN4 3'UTR 0.37 TCGA-QC-A7B5-01 8 27634301 27634301 C T ESCO2 Missense_Mutation p.S159L 0.44 tolerated(0.14) benign(0.008) TCGA-QC-A7B5-01 8 2857542 2857542 C T CSMD1 Missense_Mutation p.G2714E 0.22 probably_damaging(1) TCGA-QC-A7B5-01 8 28610443 28610443 C T EXTL3 3'UTR 0.38 TCGA-QC-A7B5-01 8 2976057 2976057 C T CSMD1 Missense_Mutation p.M2098I 0.11 benign(0.001) TCGA-QC-A7B5-01 8 3000081 3000081 G A CSMD1 Silent p.L2049L 0.33 TCGA-QC-A7B5-01 8 30546714 30546714 C T GSR Silent p.R335R 0.36 TCGA-QC-A7B5-01 8 30705655 30705655 C T TEX15 Silent p.G293G 0.15 TCGA-QC-A7B5-01 8 3087633 3087633 C T CSMD1 Missense_Mutation p.G1425E 0.37 probably_damaging(0.987) TCGA-QC-A7B5-01 8 3216839 3216839 C T CSMD1 Missense_Mutation p.D1047N 0.22 probably_damaging(0.999) TCGA-QC-A7B5-01 8 3226824 3226824 G A CSMD1 Missense_Mutation p.P951S 0.25 probably_damaging(0.999) TCGA-QC-A7B5-01 8 33355983 33355983 G A MAK16 Missense_Mutation p.D247N 0.31 deleterious(0.05) benign(0.118) TCGA-QC-A7B5-01 8 37687454 37687454 G A GPR124 Missense_Mutation p.E214K 0.19 deleterious(0.02) benign(0.14) TCGA-QC-A7B5-01 8 37702291 37702291 G A BRF2 Missense_Mutation p.P326L 0.18 tolerated(0.17) benign(0.001) TCGA-QC-A7B5-01 8 37707398 37707398 G A BRF2 5'UTR 0.32 TCGA-QC-A7B5-01 8 37727931 37727931 G A RAB11FIP1 Intron 0.28 TCGA-QC-A7B5-01 8 38271205 38271205 C T FGFR1 Missense_Mutation p.E835K 0.50 deleterious(0.03) possibly_damaging(0.907) TCGA-QC-A7B5-01 8 38314944 38314944 G A FGFR1 Silent p.L40L 0.16 TCGA-QC-A7B5-01 8 38940563 38940563 G A ADAM9 Missense_Mutation p.G680E 0.21 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 8 39602383 39602383 C T ADAM2 Missense_Mutation p.G735E 0.39 deleterious_low_confidence(0.01) unknown(0) TCGA-QC-A7B5-01 8 40388235 40388235 C T ZMAT4 3'UTR 0.36 TCGA-QC-A7B5-01 8 41467192 41467192 C T AGPAT6 Missense_Mutation p.P85L 0.36 tolerated(0.18) benign(0.42) TCGA-QC-A7B5-01 8 41526059 41526059 C T ANK1 Missense_Mutation p.G1748D 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.877) TCGA-QC-A7B5-01 8 41529933 41529933 C T ANK1 Missense_Mutation p.G1720R 0.24 tolerated_low_confidence(0.05) benign(0.005) TCGA-QC-A7B5-01 8 41529934 41529934 C T ANK1 Silent p.R1719R 0.23 TCGA-QC-A7B5-01 8 41530214 41530214 A T ANK1 Missense_Mutation p.L1626Q 0.19 deleterious_low_confidence(0.01) probably_damaging(0.915) TCGA-QC-A7B5-01 8 41530215 41530215 G T ANK1 Missense_Mutation p.L1626M 0.19 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-QC-A7B5-01 8 41530229 41530229 G T ANK1 Missense_Mutation p.A1621D 0.15 deleterious_low_confidence(0) probably_damaging(0.92) TCGA-QC-A7B5-01 8 41552192 41552192 G A ANK1 Missense_Mutation p.S1123F 0.42 tolerated(0.45) benign(0.008) TCGA-QC-A7B5-01 8 41834533 41834533 C A KAT6A Missense_Mutation p.W452C 0.38 benign(0.095) TCGA-QC-A7B5-01 8 42294799 42294799 C T SLC20A2 Missense_Mutation p.E411K 0.41 tolerated(0.33) possibly_damaging(0.723) TCGA-QC-A7B5-01 8 43155758 43155758 G A RNU6-104P 5'Flank 0.34 TCGA-QC-A7B5-01 8 49642353 49642353 G A EFCAB1 Missense_Mutation p.L133F 0.30 tolerated(0.06) probably_damaging(0.942) TCGA-QC-A7B5-01 8 49985427 49985427 G A C8orf22 Missense_Mutation p.R13K 0.24 tolerated(1) benign(0.001) TCGA-QC-A7B5-01 8 53076550 53076550 G A ST18 Missense_Mutation p.H466Y 0.21 tolerated(1) benign(0.397) TCGA-QC-A7B5-01 8 53079527 53079527 C T ST18 Silent p.K363K 0.43 TCGA-QC-A7B5-01 8 53084844 53084844 C T ST18 Missense_Mutation p.E193K 0.16 deleterious(0) benign(0.283) TCGA-QC-A7B5-01 8 54960518 54960519 - T LYPLA1 3'UTR 0.24 TCGA-QC-A7B5-01 8 56438028 56438028 G A XKR4 3'UTR 0.12 TCGA-QC-A7B5-01 8 56986679 56986679 C T RPS20 Missense_Mutation p.V15M 0.38 tolerated(0.14) benign(0.062) TCGA-QC-A7B5-01 8 57074005 57074005 C T PLAG1 3'UTR 0.30 TCGA-QC-A7B5-01 8 57358487 57358487 G C PENK Missense_Mutation p.T9S 0.26 tolerated(0.46) benign(0.14) TCGA-QC-A7B5-01 8 59059503 59059503 C T FAM110B Silent p.S238S 0.23 TCGA-QC-A7B5-01 8 61778952 61778952 C T CHD7 3'UTR 0.28 TCGA-QC-A7B5-01 8 62212260 62212260 C T CLVS1 5'UTR 0.24 TCGA-QC-A7B5-01 8 62430152 62430152 G A ASPH Silent p.L687L 0.24 TCGA-QC-A7B5-01 8 62537474 62537474 T C ASPH Intron 0.30 TCGA-QC-A7B5-01 8 63985641 63985641 T A TTPA Nonsense_Mutation p.K71* 0.33 TCGA-QC-A7B5-01 8 64098914 64098914 C T YTHDF3 Silent p.T114T 0.36 TCGA-QC-A7B5-01 8 66605949 66605949 T C MTFR1 Missense_Mutation p.V79A 0.25 deleterious(0) possibly_damaging(0.702) TCGA-QC-A7B5-01 8 6669733 6669733 C T XKR5 RNA 0.24 TCGA-QC-A7B5-01 8 6669734 6669734 C T XKR5 RNA 0.24 TCGA-QC-A7B5-01 8 69358599 69358599 G A C8orf34 Missense_Mutation p.D171N 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-QC-A7B5-01 8 70405199 70405199 C T SULF1 Intron 0.36 TCGA-QC-A7B5-01 8 72127655 72127655 G A EYA1 Missense_Mutation p.P522S 0.38 tolerated(0.05) benign(0.012) TCGA-QC-A7B5-01 8 72948686 72948686 T C TRPA1 Missense_Mutation p.N798D 0.22 tolerated(0.19) possibly_damaging(0.744) TCGA-QC-A7B5-01 8 7308314 7308314 G A SPAG11B Missense_Mutation p.P108L 0.14 deleterious(0.02) probably_damaging(0.993) TCGA-QC-A7B5-01 8 7718276 7718276 C T SPAG11A Intron 0.65 TCGA-QC-A7B5-01 8 77616289 77616289 G A ZFHX4 5'UTR 0.34 TCGA-QC-A7B5-01 8 80954897 80954897 G A TPD52 Silent p.S171S 0.10 TCGA-QC-A7B5-01 8 82439336 82439336 C T FABP12 Silent p.K89K 0.25 TCGA-QC-A7B5-01 8 86194494 86194494 C T CA13 3'UTR 0.14 TCGA-QC-A7B5-01 8 88298887 88298887 C T CNBD1 Missense_Mutation p.P344S 0.37 deleterious(0.05) probably_damaging(0.913) TCGA-QC-A7B5-01 8 88884989 88884989 C A DCAF4L2 3'UTR 0.31 TCGA-QC-A7B5-01 8 92032477 92032477 G A TMEM55A Silent p.P90P 0.35 TCGA-QC-A7B5-01 8 94747818 94747818 C T RBM12B Missense_Mutation p.R274K 0.36 tolerated(0.35) probably_damaging(0.977) TCGA-QC-A7B5-01 8 94934287 94934287 C T PDP1 Silent p.A25A 0.44 TCGA-QC-A7B5-01 8 95164118 95164118 C T CDH17 Missense_Mutation p.D592N 0.27 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 8 95523214 95523214 A T KIAA1429 Intron 0.45 TCGA-QC-A7B5-01 8 95940789 95940789 C T TP53INP1 3'UTR 0.28 TCGA-QC-A7B5-01 8 97247742 97247742 G A UQCRB Missense_Mutation p.A6V 0.33 tolerated(0.08) benign(0.147) TCGA-QC-A7B5-01 9 101992687 101992687 G A SEC61B Missense_Mutation p.G91D 0.36 deleterious(0.05) benign(0.03) TCGA-QC-A7B5-01 9 102861322 102861322 C T ERP44 5'UTR 0.34 TCGA-QC-A7B5-01 9 103348406 103348406 G A MURC Silent p.K256K 0.33 TCGA-QC-A7B5-01 9 104190751 104190751 C G ALDOB Missense_Mutation p.G127R 0.19 deleterious(0) possibly_damaging(0.721) TCGA-QC-A7B5-01 9 107299036 107299036 C T OR13C3 Missense_Mutation p.R20K 0.41 tolerated_low_confidence(0.82) benign(0) TCGA-QC-A7B5-01 9 107526483 107526483 G A NIPSNAP3B 5'UTR 0.31 TCGA-QC-A7B5-01 9 109701298 109701298 C T ZNF462 Missense_Mutation p.P2113S 0.23 probably_damaging(0.997) TCGA-QC-A7B5-01 9 111655349 111655349 G A IKBKAP Missense_Mutation p.P959S 0.33 tolerated(0.96) benign(0.005) TCGA-QC-A7B5-01 9 111881966 111881966 G A TMEM245 Silent p.I76I 0.17 TCGA-QC-A7B5-01 9 111954565 111954565 G A EPB41L4B Missense_Mutation p.T765I 0.36 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-QC-A7B5-01 9 113171131 113171131 T C SVEP1 Missense_Mutation p.H2250R 0.25 possibly_damaging(0.595) TCGA-QC-A7B5-01 9 113209263 113209263 C T SVEP1 Missense_Mutation p.R1393K 0.44 benign(0.007) TCGA-QC-A7B5-01 9 113244718 113244718 C T SVEP1 Missense_Mutation p.G698E 0.32 probably_damaging(1) TCGA-QC-A7B5-01 9 113244719 113244719 C T SVEP1 Missense_Mutation p.G698R 0.32 probably_damaging(1) TCGA-QC-A7B5-01 9 113459746 113459746 G A MUSK Missense_Mutation p.V210I 0.27 tolerated(0.17) possibly_damaging(0.529) TCGA-QC-A7B5-01 9 113530214 113530214 G A MUSK Silent p.E345E 0.40 TCGA-QC-A7B5-01 9 114213754 114213754 G A KIAA0368 Missense_Mutation p.P213L 0.38 deleterious(0.05) possibly_damaging(0.757) TCGA-QC-A7B5-01 9 115962207 115962207 C T FKBP15 Missense_Mutation p.D179N 0.31 deleterious(0.05) benign(0.018) TCGA-QC-A7B5-01 9 116795004 116795004 C T ZNF618 Silent p.S295S 0.31 TCGA-QC-A7B5-01 9 117555839 117555839 C T TNFSF15 Missense_Mutation p.G74R 0.40 tolerated(0.18) benign(0.004) TCGA-QC-A7B5-01 9 117852886 117852886 C T TNC Missense_Mutation p.E138K 0.19 deleterious(0.01) possibly_damaging(0.728) TCGA-QC-A7B5-01 9 119159741 119159741 C T PAPPA 3'UTR 0.45 TCGA-QC-A7B5-01 9 119737615 119737615 G A ASTN2 Silent p.F536F 0.17 TCGA-QC-A7B5-01 9 119770453 119770453 G A ASTN2 Silent p.I452I 0.28 TCGA-QC-A7B5-01 9 123667463 123667463 G A TRAF1 Silent p.F362F 0.30 TCGA-QC-A7B5-01 9 125003734 125003734 C T RBM18 3'UTR 0.23 TCGA-QC-A7B5-01 9 125273338 125273338 G A OR1J2 Silent p.R86R 0.28 TCGA-QC-A7B5-01 9 125487078 125487078 G A OR1L4 Missense_Mutation p.M270I 0.30 tolerated(0.12) benign(0.005) TCGA-QC-A7B5-01 9 127088703 127088703 G A NEK6 Missense_Mutation p.R201Q 0.40 deleterious(0.05) probably_damaging(0.988) TCGA-QC-A7B5-01 9 127088704 127088704 G A NEK6 Silent p.R201R 0.40 TCGA-QC-A7B5-01 9 128728848 128728848 G A PBX3 3'UTR 0.24 TCGA-QC-A7B5-01 9 129854204 129854204 T C ANGPTL2 Missense_Mutation p.I343V 0.34 tolerated(0.32) probably_damaging(0.991) TCGA-QC-A7B5-01 9 129870370 129870370 G A ANGPTL2 Missense_Mutation p.P214L 0.38 tolerated(0.36) benign(0.005) TCGA-QC-A7B5-01 9 130166981 130166981 C T SLC2A8 Intron 0.19 TCGA-QC-A7B5-01 9 130485607 130485607 C T TTC16 Silent p.L289L 0.34 TCGA-QC-A7B5-01 9 130670790 130670790 G A ST6GALNAC4 Silent p.L264L 0.39 TCGA-QC-A7B5-01 9 130700157 130700157 C T DPM2 5'UTR 0.26 TCGA-QC-A7B5-01 9 130703842 130703842 T C FAM102A 3'UTR 0.36 TCGA-QC-A7B5-01 9 131008733 131008733 G A DNM1 Missense_Mutation p.G578S 0.26 tolerated(0.36) benign(0.069) TCGA-QC-A7B5-01 9 131027900 131027900 G A GOLGA2 Silent p.L272L 0.37 TCGA-QC-A7B5-01 9 131298710 131298710 C G GLE1 Missense_Mutation p.R575G 0.34 deleterious(0.01) possibly_damaging(0.5) TCGA-QC-A7B5-01 9 131454159 131454159 G A SET Missense_Mutation p.E65K 0.49 deleterious(0.01) possibly_damaging(0.831) TCGA-QC-A7B5-01 9 131554812 131554812 C T TBC1D13 Silent p.F114F 0.25 TCGA-QC-A7B5-01 9 131755834 131755834 C A NUP188 Missense_Mutation p.H960N 0.35 tolerated(0.1) benign(0.021) TCGA-QC-A7B5-01 9 131857425 131857425 C T CRAT 3'UTR 0.18 TCGA-QC-A7B5-01 9 13196121 13196121 A T MPDZ Missense_Mutation p.V552E 0.50 deleterious(0) probably_damaging(0.983) TCGA-QC-A7B5-01 9 132375485 132375485 C T C9orf50 Missense_Mutation p.M363I 0.37 deleterious(0.04) benign(0.01) TCGA-QC-A7B5-01 9 132576163 132576163 G A TOR1A 3'UTR 0.38 TCGA-QC-A7B5-01 9 132651506 132651506 G A FNBP1 3'UTR 0.11 TCGA-QC-A7B5-01 9 132841942 132841942 C T GPR107 Silent p.T140T 0.22 TCGA-QC-A7B5-01 9 133355185 133355185 C T ASS1 Silent p.V257V 0.38 TCGA-QC-A7B5-01 9 133558093 133558093 C T PRDM12 3'UTR 0.38 TCGA-QC-A7B5-01 9 133927960 133927960 C T LAMC3 Silent p.L571L 0.31 TCGA-QC-A7B5-01 9 134002969 134002969 C T NUP214 Missense_Mutation p.P35L 0.29 unknown(0) TCGA-QC-A7B5-01 9 134346221 134346221 C T PRRC2B Missense_Mutation p.P653L 0.21 deleterious(0) probably_damaging(0.932) TCGA-QC-A7B5-01 9 134350666 134350666 C T PRRC2B Silent p.I1050I 0.21 TCGA-QC-A7B5-01 9 134467545 134467545 G A RAPGEF1 Silent p.F737F 0.38 TCGA-QC-A7B5-01 9 135782743 135782743 A G TSC1 Silent p.D426D 0.34 TCGA-QC-A7B5-01 9 135919222 135919222 C T GTF3C5 Missense_Mutation p.H161Y 0.35 deleterious(0.01) benign(0.225) TCGA-QC-A7B5-01 9 136131317 136131317 C T RP11-430N14.4 5'Flank 0.28 TCGA-QC-A7B5-01 9 136131470 136131470 G A RP11-430N14.4 5'Flank 0.42 TCGA-QC-A7B5-01 9 136507497 136507497 C T DBH Missense_Mutation p.P219S 0.26 tolerated(0.11) benign(0.367) TCGA-QC-A7B5-01 9 136568350 136568350 C T SARDH Intron 0.54 TCGA-QC-A7B5-01 9 136634550 136634550 G A VAV2 Missense_Mutation p.P808L 0.40 tolerated(0.06) possibly_damaging(0.662) TCGA-QC-A7B5-01 9 136634551 136634551 G A VAV2 Missense_Mutation p.P808S 0.39 deleterious(0.02) possibly_damaging(0.735) TCGA-QC-A7B5-01 9 138395268 138395268 C T MRPS2 Intron 0.21 TCGA-QC-A7B5-01 9 138515902 138515902 G T GLT6D1 3'UTR 0.34 TCGA-QC-A7B5-01 9 138515903 138515903 G A GLT6D1 3'UTR 0.33 TCGA-QC-A7B5-01 9 138588519 138588519 C T SOHLH1 Silent p.T200T 0.33 TCGA-QC-A7B5-01 9 139347927 139347927 G A SEC16A Missense_Mutation p.L2038F 0.27 tolerated(0.8) benign(0.067) TCGA-QC-A7B5-01 9 139370430 139370430 G A SEC16A Silent p.F546F 0.43 TCGA-QC-A7B5-01 9 139379929 139379929 G A C9orf163 3'UTR 0.39 TCGA-QC-A7B5-01 9 139698970 139698970 G A CCDC183 Missense_Mutation p.R228K 0.31 tolerated(1) benign(0.002) TCGA-QC-A7B5-01 9 139701265 139701265 G A CCDC183 Silent p.E445E 0.38 TCGA-QC-A7B5-01 9 139732377 139732377 A T RABL6 Missense_Mutation p.D398V 0.32 tolerated(0.06) possibly_damaging(0.904) TCGA-QC-A7B5-01 9 140007474 140007474 G A DPP7 Silent p.T267T 0.35 TCGA-QC-A7B5-01 9 140093979 140093979 C T TPRN Silent p.E395E 0.35 TCGA-QC-A7B5-01 9 140099807 140099807 G A TMEM203 Silent p.F20F 0.14 TCGA-QC-A7B5-01 9 140120689 140120689 C T C9orf169 3'UTR 0.34 TCGA-QC-A7B5-01 9 140786440 140786440 G A CACNA1B Intron 0.36 TCGA-QC-A7B5-01 9 15846728 15846728 G A CCDC171 Missense_Mutation p.R1099K 0.57 tolerated(0.06) probably_damaging(0.995) TCGA-QC-A7B5-01 9 16552696 16552696 G A BNC2 Silent p.V167V 0.28 TCGA-QC-A7B5-01 9 19347012 19347012 G T DENND4C Missense_Mutation p.M1366I 0.56 deleterious(0.02) possibly_damaging(0.485) TCGA-QC-A7B5-01 9 34660719 34660719 C T IL11RA Intron 0.37 TCGA-QC-A7B5-01 9 35044479 35044479 G A C9orf131 Missense_Mutation p.G618E 0.36 tolerated(0.14) possibly_damaging(0.536) TCGA-QC-A7B5-01 9 35607352 35607352 G A TESK1 Missense_Mutation p.G189D 0.40 tolerated(0.1) possibly_damaging(0.606) TCGA-QC-A7B5-01 9 3828338 3828338 G A GLIS3 Silent p.T909T 0.48 TCGA-QC-A7B5-01 9 39118222 39118222 G A CNTNAP3 Silent p.T705T 0.36 TCGA-QC-A7B5-01 9 41963856 41963856 C T RP11-204M4.2 RNA 0.13 TCGA-QC-A7B5-01 9 4572361 4572361 C T SLC1A1 Missense_Mutation p.T247I 0.30 tolerated(1) probably_damaging(0.998) TCGA-QC-A7B5-01 9 5300362 5300362 C T RLN2 Silent p.L98L 0.56 TCGA-QC-A7B5-01 9 71628256 71628256 G A PRKACG Silent p.I251I 0.40 TCGA-QC-A7B5-01 9 71844120 71844120 C T TJP2 Missense_Mutation p.P523S 0.40 tolerated(0.07) benign(0.046) TCGA-QC-A7B5-01 9 72091029 72091029 C T APBA1 Missense_Mutation p.G411S 0.12 tolerated(0.06) possibly_damaging(0.747) TCGA-QC-A7B5-01 9 74061680 74061680 G A TRPM3 Silent p.S24S 0.28 TCGA-QC-A7B5-01 9 77300936 77300936 T G RORB 3'UTR 0.55 TCGA-QC-A7B5-01 9 79119809 79119809 G A GCNT1 3'UTR 0.33 TCGA-QC-A7B5-01 9 79321687 79321687 G A PRUNE2 Nonsense_Mutation p.Q1835* 0.33 TCGA-QC-A7B5-01 9 79321688 79321688 G A PRUNE2 Silent p.P1834P 0.34 TCGA-QC-A7B5-01 9 80861674 80861674 G A CEP78 Missense_Mutation p.D290N 0.11 deleterious(0) probably_damaging(0.995) TCGA-QC-A7B5-01 9 84606073 84606073 G A SPATA31D1 Missense_Mutation p.D230N 0.34 tolerated(0.07) benign(0.286) TCGA-QC-A7B5-01 9 86593139 86593139 A G HNRNPK Missense_Mutation p.F10S 0.18 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-QC-A7B5-01 9 87342577 87342577 A G NTRK2 Missense_Mutation p.T288A 0.44 tolerated(0.82) benign(0.022) TCGA-QC-A7B5-01 9 88204543 88204543 C T AGTPBP1 Silent p.R834R 0.38 TCGA-QC-A7B5-01 9 88941389 88941389 G A ZCCHC6 Intron 0.23 TCGA-QC-A7B5-01 9 90321074 90321074 C T DAPK1 Nonsense_Mutation p.Q1030* 0.25 TCGA-QC-A7B5-01 9 91610311 91610311 G A C9orf47 3'UTR 0.46 TCGA-QC-A7B5-01 9 92220181 92220181 G A GADD45G Intron 0.22 TCGA-QC-A7B5-01 9 94871067 94871067 G A SPTLC1 Missense_Mutation p.P72L 0.34 tolerated(0.23) benign(0.051) TCGA-QC-A7B5-01 9 95797779 95797779 G A FGD3 Missense_Mutation p.E696K 0.33 tolerated(0.85) benign(0.015) TCGA-QC-A7B5-01 9 95831418 95831418 C T SUSD3 Intron 0.49 TCGA-QC-A7B5-01 9 96021237 96021237 C T WNK2 Missense_Mutation p.P803S 0.38 unknown(0) TCGA-QC-A7B5-01 9 96318681 96318681 C T FAM120A Silent p.P764P 0.22 TCGA-QC-A7B5-01 9 96715201 96715201 C T BARX1 Silent p.Q164Q 0.39 TCGA-QC-A7B5-01 9 98718251 98718251 G A ERCC6L2 Missense_Mutation p.G646R 0.14 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 X 100104375 100104375 G A NOX1 Missense_Mutation p.S446F 0.60 deleterious(0) possibly_damaging(0.633) TCGA-QC-A7B5-01 X 100177793 100177793 G A XKRX Missense_Mutation p.P198L 0.69 tolerated(0.32) benign(0.004) TCGA-QC-A7B5-01 X 100881381 100881381 C T ARMCX3 3'UTR 0.61 TCGA-QC-A7B5-01 X 101139137 101139137 G A ZMAT1 Missense_Mutation p.S421F 0.58 tolerated(0.48) benign(0.085) TCGA-QC-A7B5-01 X 10182005 10182005 G A CLCN4 Missense_Mutation p.D621N 0.66 deleterious(0.02) benign(0.154) TCGA-QC-A7B5-01 X 102529111 102529111 G A TCEAL5 Silent p.S127S 0.73 TCGA-QC-A7B5-01 X 102529112 102529112 G A TCEAL5 Missense_Mutation p.S127F 0.72 tolerated(0.66) benign(0.248) TCGA-QC-A7B5-01 X 102564405 102564405 G A BEX2 3'UTR 0.40 TCGA-QC-A7B5-01 X 104463704 104463704 G A TEX13A Missense_Mutation p.S391L 0.67 deleterious(0) possibly_damaging(0.849) TCGA-QC-A7B5-01 X 105011099 105011099 C T IL1RAPL2 Silent p.I502I 0.71 TCGA-QC-A7B5-01 X 105279334 105279334 C T SERPINA7 Missense_Mutation p.S222N 0.22 tolerated(0.24) benign(0.008) TCGA-QC-A7B5-01 X 10535288 10535288 G A MID1 Silent p.T100T 0.79 TCGA-QC-A7B5-01 X 10535289 10535289 G A MID1 Missense_Mutation p.T100I 0.82 tolerated(0.09) possibly_damaging(0.52) TCGA-QC-A7B5-01 X 105452548 105452548 G A MUM1L1 3'UTR 0.51 TCGA-QC-A7B5-01 X 106359152 106359152 C T RBM41 Silent p.R86R 0.74 TCGA-QC-A7B5-01 X 110366498 110366498 G A PAK3 Missense_Mutation p.G56E 0.67 tolerated(0.55) probably_damaging(0.978) TCGA-QC-A7B5-01 X 110366499 110366499 G A PAK3 Silent p.G56G 0.64 TCGA-QC-A7B5-01 X 111002986 111002986 C T ALG13 Missense_Mutation p.S1058L 0.59 tolerated(0.11) benign(0) TCGA-QC-A7B5-01 X 114426801 114426801 T G RBMXL3 Missense_Mutation p.S933A 0.24 deleterious_low_confidence(0.01) benign(0.097) TCGA-QC-A7B5-01 X 114426802 114426802 C T RBMXL3 Missense_Mutation p.S933F 0.25 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-QC-A7B5-01 X 123699273 123699273 C T TENM1 Missense_Mutation p.G739R 0.77 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 X 12712520 12712520 C T FRMPD4 Missense_Mutation p.P294S 0.33 deleterious(0.01) probably_damaging(1) TCGA-QC-A7B5-01 X 12736026 12736026 G A FRMPD4 Silent p.R1027R 0.24 TCGA-QC-A7B5-01 X 129148782 129148782 C T BCORL1 Silent p.S678S 0.38 TCGA-QC-A7B5-01 X 12939947 12939947 G A TLR8 Missense_Mutation p.D930N 0.33 deleterious(0.03) possibly_damaging(0.563) TCGA-QC-A7B5-01 X 129629474 129629474 G A RP1-274L7.1 Intron 0.33 TCGA-QC-A7B5-01 X 132160344 132160344 T A USP26 Silent p.P635P 0.30 TCGA-QC-A7B5-01 X 134990644 134990644 G A SAGE1 Missense_Mutation p.V437I 0.69 tolerated(0.8) benign(0.035) TCGA-QC-A7B5-01 X 135730454 135730454 G A CD40LG Missense_Mutation p.G16E 0.67 tolerated(0.4) benign(0.424) TCGA-QC-A7B5-01 X 135757223 135757223 G A ARHGEF6 Missense_Mutation p.L660F 0.76 deleterious(0) probably_damaging(0.996) TCGA-QC-A7B5-01 X 136652049 136652049 G A ZIC3 Splice_Site p.X409_splice 0.62 TCGA-QC-A7B5-01 X 139585629 139585629 C T SOX3 3'UTR 0.66 TCGA-QC-A7B5-01 X 140786496 140786496 C T SPANXD Missense_Mutation p.E23K 0.53 tolerated(0.11) benign(0.007) TCGA-QC-A7B5-01 X 142795316 142795316 G A SPANXN2 Missense_Mutation p.S121F 0.17 tolerated(0.44) unknown(0) TCGA-QC-A7B5-01 X 150842501 150842501 C T PASD1 Missense_Mutation p.P673L 0.67 tolerated(0.11) possibly_damaging(0.851) TCGA-QC-A7B5-01 X 1508618 1508618 G A SLC25A6 Silent p.V38V 0.42 TCGA-QC-A7B5-01 X 151091991 151091991 A T MAGEA4 5'UTR 0.37 TCGA-QC-A7B5-01 X 151123028 151123028 C A GABRE 3'UTR 0.74 TCGA-QC-A7B5-01 X 151123886 151123886 A C GABRE Missense_Mutation p.L364R 0.35 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 X 151869463 151869463 G A MAGEA6 Silent p.G51G 0.55 TCGA-QC-A7B5-01 X 152481762 152481762 C T MAGEA1 3'UTR 0.33 TCGA-QC-A7B5-01 X 153051017 153051017 G A SRPK3 3'UTR 0.71 TCGA-QC-A7B5-01 X 153219588 153219588 G A HCFC1 Missense_Mutation p.P1421L 0.29 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-QC-A7B5-01 X 153220527 153220527 G A HCFC1 Missense_Mutation p.P1108L 0.55 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-QC-A7B5-01 X 153629400 153629400 C T RPL10 3'UTR 0.77 TCGA-QC-A7B5-01 X 154721289 154721289 C T TMLHE Silent p.R391R 0.35 TCGA-QC-A7B5-01 X 155010426 155010426 G A SPRY3 3'UTR 0.58 TCGA-QC-A7B5-01 X 15721249 15721249 C T CA5BP1 RNA 0.80 TCGA-QC-A7B5-01 X 15851087 15851087 T C AP1S2 Intron 0.71 TCGA-QC-A7B5-01 X 16168572 16168572 G A GRPR Silent p.E186E 0.74 TCGA-QC-A7B5-01 X 16168573 16168573 G A GRPR Missense_Mutation p.E187K 0.72 tolerated(0.92) benign(0.002) TCGA-QC-A7B5-01 X 1718618 1718618 T C AKAP17A Intron 0.50 TCGA-QC-A7B5-01 X 18725934 18725934 G A PPEF1 Missense_Mutation p.R12K 0.73 tolerated(1) benign(0) TCGA-QC-A7B5-01 X 21549994 21549994 C T CNKSR2 Missense_Mutation p.P371L 0.43 tolerated(0.36) benign(0.038) TCGA-QC-A7B5-01 X 21875571 21875571 C T YY2 Silent p.S323S 0.59 TCGA-QC-A7B5-01 X 21875572 21875572 C T YY2 Missense_Mutation p.L324F 0.59 deleterious(0) probably_damaging(1) TCGA-QC-A7B5-01 X 26157983 26157983 C T MAGEB18 Missense_Mutation p.T294I 0.67 deleterious(0.01) possibly_damaging(0.632) TCGA-QC-A7B5-01 X 27839441 27839441 G A MAGEB10 Silent p.K6K 0.28 TCGA-QC-A7B5-01 X 29959898 29959898 A G IL1RAPL1 Silent p.E396E 0.36 TCGA-QC-A7B5-01 X 31462633 31462633 G A DMD Silent p.L3017L 0.62 TCGA-QC-A7B5-01 X 34961452 34961452 C T FAM47B Silent p.A168A 0.37 TCGA-QC-A7B5-01 X 38033465 38033465 G A SRPX Silent p.S99S 0.69 TCGA-QC-A7B5-01 X 47446025 47446025 C T TIMP1 Missense_Mutation p.L187F 0.38 tolerated(0.3) benign(0.209) TCGA-QC-A7B5-01 X 48318260 48318260 G A SLC38A5 Silent p.I357I 0.75 TCGA-QC-A7B5-01 X 48768960 48768960 C T SLC35A2 5'Flank 0.61 TCGA-QC-A7B5-01 X 48779606 48779606 C T OTUD5 3'UTR 0.63 TCGA-QC-A7B5-01 X 49642959 49642959 C T USP27X 5'Flank 0.71 TCGA-QC-A7B5-01 X 49862626 49862626 G A CLCN5 3'UTR 0.67 TCGA-QC-A7B5-01 X 53268415 53268415 G A IQSEC2 Missense_Mutation p.P1026L 0.73 tolerated(0.08) benign(0.054) TCGA-QC-A7B5-01 X 65390509 65390509 C T HEPH Missense_Mutation p.R87W 0.25 deleterious(0.03) possibly_damaging(0.582) TCGA-QC-A7B5-01 X 69261811 69261811 G A AWAT2 Silent p.V283V 0.86 TCGA-QC-A7B5-01 X 69283432 69283432 G A OTUD6A 3'UTR 0.44 TCGA-QC-A7B5-01 X 69647166 69647166 C G GDPD2 Silent p.S263S 0.45 TCGA-QC-A7B5-01 X 70469918 70469918 G A ZMYM3 Silent p.P403P 0.67 TCGA-QC-A7B5-01 X 70469919 70469919 G A ZMYM3 Missense_Mutation p.P403L 0.71 tolerated(0.36) benign(0.076) TCGA-QC-A7B5-01 X 70595092 70595092 C T TAF1 Missense_Mutation p.P163L 0.69 tolerated(0.11) benign(0.105) TCGA-QC-A7B5-01 X 70775130 70775130 C T OGT Silent p.G273G 0.81 TCGA-QC-A7B5-01 X 70787568 70787568 C T OGT Silent p.V936V 0.52 TCGA-QC-A7B5-01 X 70787569 70787569 C T OGT Missense_Mutation p.L937F 0.50 deleterious(0) probably_damaging(0.998) TCGA-QC-A7B5-01 X 71813108 71813108 A T PHKA1 Missense_Mutation p.M1030K 0.74 tolerated(0.9) benign(0.001) TCGA-QC-A7B5-01 X 73044726 73044726 A G XIST RNA 0.78 TCGA-QC-A7B5-01 X 77245339 77245339 C T ATP7A Silent p.S407S 0.39 TCGA-QC-A7B5-01 X 77913318 77913318 G A ZCCHC5 Silent p.F200F 0.38 TCGA-QC-A7B5-01 X 79286459 79286459 C T TBX22 Missense_Mutation p.S471F 0.69 deleterious(0) possibly_damaging(0.867) TCGA-QC-A7B5-01 X 91878116 91878116 G A PCDH11X 3'UTR 0.66 TCGA-QC-A7B5-01 X 96213056 96213056 C T DIAPH2 Missense_Mutation p.P615L 0.61 tolerated(0.11) unknown(0) TCGA-QC-A7B5-01 X 9863008 9863008 C T SHROOM2 Nonsense_Mutation p.Q354* 0.49 TCGA-QC-A7B5-01 Y 4925406 4925406 C T PCDH11Y Missense_Mutation p.P181L 0.61 deleterious(0) probably_damaging(1) TCGA-QC-AA9N-01 10 105006438 105006438 T A RPEL1 Nonstop_Mutation p.*229Rext*68 0.50 TCGA-QC-AA9N-01 10 105836073 105836073 C T COL17A1 Missense_Mutation p.R106H 0.57 unknown(0) TCGA-QC-AA9N-01 10 27324559 27324559 C T ANKRD26 Silent p.K940K 0.13 TCGA-QC-AA9N-01 10 63445876 63445876 A T C10orf107 Nonsense_Mutation p.K50* 0.36 TCGA-QC-AA9N-01 10 89621940 89621940 C T KLLN Missense_Mutation p.R102Q 0.38 tolerated(0.46) benign(0.002) TCGA-QC-AA9N-01 11 43464991 43464991 G C TTC17 Missense_Mutation p.G790R 0.76 deleterious(0.05) possibly_damaging(0.467) TCGA-QC-AA9N-01 11 55944513 55944513 G A OR5J2 Silent p.K140K 0.55 TCGA-QC-AA9N-01 12 124409668 124409668 G A DNAH10 Silent p.Q3828Q 0.37 TCGA-QC-AA9N-01 12 125609312 125609312 C T AACS Missense_Mutation p.P395S 0.37 deleterious(0) probably_damaging(0.999) TCGA-QC-AA9N-01 12 56711307 56711307 G C PAN2 3'UTR 0.26 TCGA-QC-AA9N-01 13 36223860 36223860 G A NBEA Silent p.K2592K 0.45 TCGA-QC-AA9N-01 13 45008625 45008625 T A TSC22D1 3'UTR 0.65 TCGA-QC-AA9N-01 14 20010207 20010207 C T POTEM Silent p.S317S 0.13 TCGA-QC-AA9N-01 15 41774962 41774962 C T RTF1 3'UTR 0.26 TCGA-QC-AA9N-01 15 48057148 48057148 T C SEMA6D Missense_Mutation p.V441A 0.50 deleterious(0) benign(0.37) TCGA-QC-AA9N-01 16 2115569 2115596 TGGCCGCATACTCGGCCTCCTTGGAGGA - TSC2 Frame_Shift_Del p.A551* 0.39 TCGA-QC-AA9N-01 17 11593347 11593347 C G DNAH9 Missense_Mutation p.T1403S 0.28 possibly_damaging(0.673) TCGA-QC-AA9N-01 17 16722271 16722271 T A AC022596.6 RNA 0.25 TCGA-QC-AA9N-01 17 3563816 3563816 C A CTNS Intron 0.43 TCGA-QC-AA9N-01 17 40025733 40025733 G C ACLY Silent p.T1015T 0.36 TCGA-QC-AA9N-01 17 42759385 42759385 C G CCDC43 Silent p.V138V 0.28 TCGA-QC-AA9N-01 17 80042159 80042159 T A FASN Missense_Mutation p.T1624S 0.38 deleterious(0) probably_damaging(0.999) TCGA-QC-AA9N-01 18 21892054 21892054 A G OSBPL1A Missense_Mutation p.I329T 0.86 deleterious(0) benign(0.06) TCGA-QC-AA9N-01 18 22807082 22807082 T C ZNF521 Missense_Mutation p.E267G 0.64 tolerated(0.27) probably_damaging(0.935) TCGA-QC-AA9N-01 18 55153840 55153840 A G ONECUT2 3'UTR 0.13 TCGA-QC-AA9N-01 18 58039751 58039751 A - MC4R 5'UTR 0.21 TCGA-QC-AA9N-01 18 74701989 74701989 G C MBP Missense_Mutation p.H69D 0.17 deleterious(0) probably_damaging(0.975) TCGA-QC-AA9N-01 19 16861027 16861027 C T NWD1 Missense_Mutation p.A525V 0.32 tolerated(0.19) benign(0.198) TCGA-QC-AA9N-01 19 56108990 56108990 C T FIZ1 Missense_Mutation p.C81Y 0.19 deleterious(0) unknown(0) TCGA-QC-AA9N-01 1 160111084 160111084 G T ATP1A2 Missense_Mutation p.G1012V 0.35 deleterious(0) possibly_damaging(0.878) TCGA-QC-AA9N-01 1 169489791 169489791 G T F5 Missense_Mutation p.L2054I 0.33 deleterious(0.03) probably_damaging(0.924) TCGA-QC-AA9N-01 1 240638065 240638065 G T FMN2 3'UTR 0.55 TCGA-QC-AA9N-01 1 248685143 248685143 C T OR2G6 Missense_Mutation p.L66F 0.62 deleterious(0) probably_damaging(0.998) TCGA-QC-AA9N-01 1 26795716 26795719 AATG - DHDDS 3'UTR 0.27 TCGA-QC-AA9N-01 20 44002615 44002615 T C TP53TG5 Missense_Mutation p.R269G 0.18 deleterious_low_confidence(0.04) benign(0.173) TCGA-QC-AA9N-01 20 47271871 47271871 C A PREX1 Missense_Mutation p.Q722H 0.30 deleterious(0) possibly_damaging(0.832) TCGA-QC-AA9N-01 21 42807952 42807952 C G MX1 Silent p.G98G 0.34 TCGA-QC-AA9N-01 22 43539152 43539152 G T MCAT Missense_Mutation p.P68Q 0.22 deleterious(0) probably_damaging(1) TCGA-QC-AA9N-01 2 179742829 179742829 G T CCDC141 Silent p.T587T 0.61 TCGA-QC-AA9N-01 2 239155060 239155060 C T PER2 Missense_Mutation p.E1242K 0.56 tolerated(0.42) benign(0.004) TCGA-QC-AA9N-01 2 31167809 31167809 C T GALNT14 Splice_Site p.X253_splice 0.15 TCGA-QC-AA9N-01 3 169557737 169557737 G T LRRC31 3'UTR 0.23 TCGA-QC-AA9N-01 5 112337295 112337295 G T DCP2 Missense_Mutation p.G244C 0.34 deleterious(0.02) possibly_damaging(0.54) TCGA-QC-AA9N-01 5 127610308 127610308 A T FBN2 Missense_Mutation p.F2554L 0.38 deleterious(0) probably_damaging(0.999) TCGA-QC-AA9N-01 5 41038986 41038986 A T MROH2B Missense_Mutation p.L689H 0.35 tolerated(0.14) benign(0.016) TCGA-QC-AA9N-01 5 678180 678180 C A TPPP Splice_Site 0.05 TCGA-QC-AA9N-01 6 123376999 123376999 C G CLVS2 Missense_Mutation p.P242A 0.26 tolerated(0.21) benign(0.101) TCGA-QC-AA9N-01 6 25862063 25862063 G A SLC17A3 Silent p.V166V 0.31 TCGA-QC-AA9N-01 6 40347042 40347042 A T TDRG1 RNA 0.45 TCGA-QC-AA9N-01 6 42979913 42979913 C A MEA1 3'UTR 0.33 TCGA-QC-AA9N-01 7 138865918 138865918 C A TTC26 Missense_Mutation p.Q465K 0.48 tolerated(0.07) possibly_damaging(0.83) TCGA-QC-AA9N-01 7 18630036 18630036 A G HDAC9 Silent p.Q114Q 0.38 TCGA-QC-AA9N-01 7 2289570 2289570 G C NUDT1 Missense_Mutation p.E100D 0.75 tolerated(1) benign(0.001) TCGA-QC-AA9N-01 7 73442538 73442538 G A ELN Silent p.A7A 0.62 TCGA-QC-AA9N-01 8 10383240 10383240 C A PRSS55 Missense_Mutation p.P49T 0.36 tolerated(0.75) benign(0.004) TCGA-QC-AA9N-01 8 85785593 85785593 C T RALYL Missense_Mutation p.R229C 0.66 deleterious(0) probably_damaging(0.975) TCGA-QC-AA9N-01 9 133779388 133779388 A T FIBCD1 3'UTR 0.40 TCGA-QC-AA9N-01 X 20156712 20156712 A G EIF1AX Silent p.G15G 0.32 TCGA-QC-AA9N-01 X 27765205 27765205 G A DCAF8L2 Missense_Mutation p.D65N 0.27 tolerated(0.5) benign(0.194) TCGA-QC-AA9N-01 X 47270076 47270076 C T ZNF157 Intron 0.34 TCGA-QC-AA9N-01 X 52825289 52825289 G A SPANXN5 3'UTR 0.17 TCGA-QC-AA9N-01 X 76938331 76938331 T - ATRX Frame_Shift_Del p.K806Rfs*16 0.38 TCGA-QQ-A5V2-01 11 6292496 6292496 G A CCKBR Missense_Mutation p.R356H 0.22 deleterious(0) possibly_damaging(0.849) TCGA-QQ-A5V2-01 12 48577971 48577971 G A C12orf68 Silent p.V22V 0.29 TCGA-QQ-A5V2-01 13 25823473 25823473 C T MTMR6 Missense_Mutation p.S588N 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.521) TCGA-QQ-A5V2-01 15 22867604 22867604 G T TUBGCP5 Missense_Mutation p.V894L 0.31 deleterious(0) probably_damaging(0.991) TCGA-QQ-A5V2-01 17 60464715 60464715 C A EFCAB3 Missense_Mutation p.P82Q 0.34 tolerated(0.1) benign(0.046) TCGA-QQ-A5V2-01 17 73775137 73775137 T C H3F3B Missense_Mutation p.H40R 0.27 tolerated_low_confidence(0.05) benign(0.002) TCGA-QQ-A5V2-01 17 73775152 73775152 C A H3F3B Missense_Mutation p.G35V 0.28 deleterious_low_confidence(0.01) benign(0.277) TCGA-QQ-A5V2-01 17 80049467 80049467 G A FASN Nonsense_Mutation p.Q375* 0.16 TCGA-QQ-A5V2-01 18 40695445 40695445 C T RIT2 Missense_Mutation p.A14T 0.08 tolerated(0.81) benign(0.011) TCGA-QQ-A5V2-01 19 51128546 51128546 C T SYT3 Missense_Mutation p.G527E 0.06 deleterious(0) possibly_damaging(0.869) TCGA-QQ-A5V2-01 19 6712613 6712613 T C C3 Missense_Mutation p.E342G 0.10 deleterious(0) benign(0.369) TCGA-QQ-A5V2-01 1 116380369 116380369 G C NHLH2 3'UTR 0.62 TCGA-QQ-A5V2-01 1 197127005 197127042 CACAAGGGCTGGGCTAGACTTTACAGTTTACACACACA TCACAAGGGCTGGGCTAGACTTTACAGTTTACACACAC ZBTB41 3'UTR 0.29 TCGA-QQ-A5V2-01 1 6585914 6585914 T C NOL9 Nonstop_Mutation p.*703Wext*5 0.31 TCGA-QQ-A5V2-01 20 47730270 47730270 G A STAU1 3'UTR 0.21 TCGA-QQ-A5V2-01 3 432653 432653 A G CHL1 Missense_Mutation p.T868A 0.12 tolerated(0.62) benign(0.073) TCGA-QQ-A5V2-01 5 13770859 13770859 T G DNAH5 Silent p.R3202R 0.35 TCGA-QQ-A5V2-01 5 154173718 154173718 G A LARP1 Silent p.T299T 0.25 TCGA-QQ-A5V2-01 6 56473578 56473578 G T DST Intron 0.15 TCGA-QQ-A5V2-01 8 21965275 21965275 G A NUDT18 Missense_Mutation p.R170C 0.25 tolerated(0.18) benign(0.026) TCGA-QQ-A5V2-01 9 101912902 101912902 A G TGFBR1 3'UTR 0.29 TCGA-QQ-A5V2-01 9 115421591 115421591 G A KIAA1958 Missense_Mutation p.V465I 0.26 tolerated(0.07) possibly_damaging(0.75) TCGA-QQ-A5V2-01 9 130552363 130552363 T A CDK9 3'UTR 0.12 TCGA-QQ-A5V2-01 9 71094424 71094424 T C PGM5 Missense_Mutation p.I417T 0.08 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5V2-01 X 49142965 49142965 G A PPP1R3F Missense_Mutation p.G605R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-QQ-A5V9-01 10 102308182 102308182 C T HIF1AN 3'UTR 0.33 TCGA-QQ-A5V9-01 10 133963537 133963537 G A JAKMIP3 Missense_Mutation p.A667T 0.22 deleterious(0.01) possibly_damaging(0.898) TCGA-QQ-A5V9-01 11 10500123 10500123 C T AMPD3 Missense_Mutation p.P100L 0.23 tolerated(0.12) benign(0.119) TCGA-QQ-A5V9-01 11 115046832 115046832 G A CADM1 3'UTR 0.26 TCGA-QQ-A5V9-01 11 118771359 118771359 G A BCL9L Silent p.N1031N 0.70 TCGA-QQ-A5V9-01 11 123814023 123814023 C T OR6T1 Missense_Mutation p.D175N 0.21 tolerated(1) benign(0.023) TCGA-QQ-A5V9-01 11 128934794 128934794 C T ARHGAP32 Missense_Mutation p.R221H 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-QQ-A5V9-01 11 18729766 18729766 A G IGSF22 Silent p.H1025H 0.18 TCGA-QQ-A5V9-01 11 31823240 31823240 G A PAX6 Missense_Mutation p.P90S 0.19 deleterious(0) probably_damaging(1) TCGA-QQ-A5V9-01 11 44104824 44104824 G A ACCS Missense_Mutation p.R406H 0.08 tolerated(0.12) benign(0.12) TCGA-QQ-A5V9-01 11 67186392 67186392 C A CARNS1 Missense_Mutation p.A177E 0.14 tolerated(0.23) benign(0.064) TCGA-QQ-A5V9-01 12 114793771 114793771 G A TBX5 Missense_Mutation p.R375W 0.24 deleterious(0) probably_damaging(0.993) TCGA-QQ-A5V9-01 12 123036012 123036012 G A KNTC1 Missense_Mutation p.E380K 0.22 tolerated(0.12) benign(0.063) TCGA-QQ-A5V9-01 12 48189100 48189100 G C HDAC7 Missense_Mutation p.S384C 0.49 deleterious(0.01) benign(0.012) TCGA-QQ-A5V9-01 12 56427018 56427018 C T IKZF4 Missense_Mutation p.H304Y 0.28 tolerated(0.37) benign(0.026) TCGA-QQ-A5V9-01 12 665772 665772 G A B4GALNT3 Missense_Mutation p.G707D 0.20 tolerated(0.05) probably_damaging(0.93) TCGA-QQ-A5V9-01 12 89984613 89984613 T A ATP2B1 3'UTR 0.27 TCGA-QQ-A5V9-01 13 36765961 36765961 C T SOHLH2 Silent p.L244L 0.14 TCGA-QQ-A5V9-01 13 98655019 98655019 C T IPO5 Missense_Mutation p.H457Y 0.45 deleterious(0) possibly_damaging(0.825) TCGA-QQ-A5V9-01 14 105608898 105608898 A C JAG2 3'UTR 0.27 TCGA-QQ-A5V9-01 14 91744358 91744358 C T CCDC88C Missense_Mutation p.V1656I 0.24 tolerated(0.27) benign(0.001) TCGA-QQ-A5V9-01 15 43483857 43483857 G A CCNDBP1 Missense_Mutation p.D282N 0.22 tolerated(0.46) benign(0.057) TCGA-QQ-A5V9-01 15 48064820 48064820 T C SEMA6D 3'UTR 0.51 TCGA-QQ-A5V9-01 15 62320606 62320606 C T VPS13C Silent p.G133G 0.17 TCGA-QQ-A5V9-01 15 79298606 79298606 C T RASGRF1 Missense_Mutation p.R679H 0.16 deleterious(0.03) possibly_damaging(0.789) TCGA-QQ-A5V9-01 15 79350742 79350742 G A RASGRF1 Silent p.T155T 0.22 TCGA-QQ-A5V9-01 16 11410685 11410685 C T Y_RNA 3'Flank 0.38 TCGA-QQ-A5V9-01 16 2816008 2816008 C T SRRM2 Missense_Mutation p.R1827W 0.08 unknown(0) TCGA-QQ-A5V9-01 16 29088081 29088081 C T RRN3P2 Intron 0.30 TCGA-QQ-A5V9-01 16 2949067 2949067 G C FLYWCH2 Missense_Mutation p.D114H 0.06 tolerated_low_confidence(0.14) possibly_damaging(0.726) TCGA-QQ-A5V9-01 16 50265294 50265294 C T PAPD5 3'UTR 0.33 TCGA-QQ-A5V9-01 17 7077535 7077535 C T ASGR1 Silent p.G172G 0.36 TCGA-QQ-A5V9-01 17 7094060 7094060 G A DLG4 Silent p.P757P 0.30 TCGA-QQ-A5V9-01 17 71415397 71415397 G A SDK2 Silent p.I698I 0.18 TCGA-QQ-A5V9-01 17 73489859 73489859 G A KIAA0195 Missense_Mutation p.A757T 0.16 tolerated(0.4) benign(0.001) TCGA-QQ-A5V9-01 17 7577046 7577046 C A TP53 Nonsense_Mutation p.E298* 0.69 TCGA-QQ-A5V9-01 17 76046367 76046367 A G TNRC6C Silent p.E408E 0.20 TCGA-QQ-A5V9-01 19 22018956 22018956 G C ZNF43 5'UTR 0.17 TCGA-QQ-A5V9-01 19 34845027 34845027 A G KIAA0355 3'UTR 0.36 TCGA-QQ-A5V9-01 19 37266356 37266356 C T CTD-2162K18.4 Missense_Mutation p.R68C 0.39 tolerated_low_confidence(0.05) benign(0.001) TCGA-QQ-A5V9-01 19 42804136 42804136 G A PAFAH1B3 Missense_Mutation p.R132W 0.18 deleterious(0.04) possibly_damaging(0.903) TCGA-QQ-A5V9-01 19 48305491 48305502 GATTGGGCCTGG - TPRX1 In_Frame_Del p.P256_I259del 0.12 TCGA-QQ-A5V9-01 19 50840662 50840662 T G NAPSB RNA 0.12 TCGA-QQ-A5V9-01 19 56274126 56274126 G A RFPL4A Missense_Mutation p.R150H 0.11 tolerated(0.1) benign(0.118) TCGA-QQ-A5V9-01 19 7584581 7584581 C T ZNF358 Silent p.F151F 0.19 TCGA-QQ-A5V9-01 19 7754209 7754209 G A FCER2 Missense_Mutation p.A279V 0.14 deleterious(0.01) possibly_damaging(0.638) TCGA-QQ-A5V9-01 19 8154784 8154784 G A FBN3 Nonsense_Mutation p.R2082* 0.09 TCGA-QQ-A5V9-01 1 168215839 168215839 C T SFT2D2 3'UTR 0.18 TCGA-QQ-A5V9-01 1 247752366 247752366 C T OR2G2 Silent p.T235T 0.06 TCGA-QQ-A5V9-01 1 34312507 34312507 G A CSMD2 Silent p.R297R 0.19 TCGA-QQ-A5V9-01 1 39823522 39823522 A T MACF1 Missense_Mutation p.K1905M 0.17 probably_damaging(0.914) TCGA-QQ-A5V9-01 1 55050380 55050380 C T ACOT11 Missense_Mutation p.A29V 0.67 tolerated_low_confidence(0.06) benign(0.003) TCGA-QQ-A5V9-01 1 57383410 57383410 G A C8A 3'UTR 0.30 TCGA-QQ-A5V9-01 1 86048540 86048540 C T CYR61 Nonsense_Mutation p.R321* 0.07 TCGA-QQ-A5V9-01 20 1288470 1288470 G A SNPH 3'UTR 0.12 TCGA-QQ-A5V9-01 20 25755864 25755864 C T FAM182B Missense_Mutation p.G31E 0.15 deleterious_low_confidence(0.03) probably_damaging(0.97) TCGA-QQ-A5V9-01 20 30418869 30418869 C T MYLK2 Missense_Mutation p.S450L 0.17 deleterious(0) probably_damaging(0.988) TCGA-QQ-A5V9-01 21 19744557 19744557 C T TMPRSS15 Missense_Mutation p.G206E 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A5V9-01 22 17444669 17444669 C T GAB4 Silent p.P509P 0.06 TCGA-QQ-A5V9-01 2 131128341 131128341 G A PTPN18 Missense_Mutation p.A274T 0.24 tolerated(0.07) possibly_damaging(0.791) TCGA-QQ-A5V9-01 2 152548372 152548377 ACTTAC - NEB Splice_Site p.X737_splice 0.43 TCGA-QQ-A5V9-01 2 183817934 183817934 T - NCKAP1 Frame_Shift_Del p.D766Vfs*17 0.18 TCGA-QQ-A5V9-01 2 27278614 27278614 G A AGBL5 Missense_Mutation p.A325T 0.18 tolerated(0.53) benign(0.193) TCGA-QQ-A5V9-01 3 167621135 167621135 C T RP11-298O21.5 RNA 0.12 TCGA-QQ-A5V9-01 3 64133374 64133374 G T PRICKLE2 Silent p.I264I 0.15 TCGA-QQ-A5V9-01 4 77305549 77305549 G T CCDC158 Missense_Mutation p.Q140K 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-QQ-A5V9-01 4 85625498 85625498 C G WDFY3 Missense_Mutation p.R2812T 0.30 deleterious(0) benign(0.11) TCGA-QQ-A5V9-01 5 13922290 13922290 G A DNAH5 Missense_Mutation p.R196C 0.10 possibly_damaging(0.77) TCGA-QQ-A5V9-01 5 156482233 156482233 C T HAVCR1 Missense_Mutation p.V120I 0.19 tolerated(0.33) benign(0.001) TCGA-QQ-A5V9-01 5 21765143 21765143 G A CDH12 Missense_Mutation p.P487S 0.09 deleterious(0) probably_damaging(0.995) TCGA-QQ-A5V9-01 5 5460964 5460964 G A KIAA0947 Missense_Mutation p.R506Q 0.17 tolerated(0.6) benign(0.015) TCGA-QQ-A5V9-01 5 7724664 7724664 G T ADCY2 Missense_Mutation p.W570C 0.27 tolerated(0.31) probably_damaging(0.998) TCGA-QQ-A5V9-01 6 121491639 121491639 G A TBC1D32 Intron 0.14 TCGA-QQ-A5V9-01 6 125146196 125146196 C T NKAIN2 3'UTR 0.07 TCGA-QQ-A5V9-01 6 136599161 136599161 A T BCLAF1 Silent p.P286P 0.08 TCGA-QQ-A5V9-01 6 169617489 169617489 C T THBS2 3'UTR 0.52 TCGA-QQ-A5V9-01 7 101187335 101187335 G A COL26A1 Missense_Mutation p.D221N 0.05 tolerated(0.06) probably_damaging(0.917) TCGA-QQ-A5V9-01 7 127292237 127292237 G A SND1 5'UTR 0.12 TCGA-QQ-A5V9-01 7 128490862 128490862 G A FLNC Missense_Mutation p.V1802M 0.43 deleterious(0) probably_damaging(0.984) TCGA-QQ-A5V9-01 7 138601629 138601629 C A KIAA1549 Missense_Mutation p.A915S 0.22 tolerated(0.57) benign(0.118) TCGA-QQ-A5V9-01 7 138739973 138739973 A C ZC3HAV1 Missense_Mutation p.F722C 0.07 tolerated(0.18) benign(0.431) TCGA-QQ-A5V9-01 7 38305028 38305028 C A TRGC1 Nonsense_Mutation p.E85* 0.67 TCGA-QQ-A5V9-01 7 825229 825229 G A HEATR2 Missense_Mutation p.R836H 0.09 deleterious(0) possibly_damaging(0.858) TCGA-QQ-A5V9-01 7 92761924 92761924 C G SAMD9L Missense_Mutation p.D1121H 0.04 deleterious(0) probably_damaging(0.975) TCGA-QQ-A5V9-01 8 110980710 110980710 G C KCNV1 Missense_Mutation p.S370R 0.53 deleterious(0) benign(0.304) TCGA-QQ-A5V9-01 8 22380189 22380189 C A PPP3CC Missense_Mutation p.S290R 0.38 deleterious(0) benign(0.243) TCGA-QQ-A5V9-01 8 28909077 28909086 GGATGCAAGC - HMBOX1 3'UTR 0.11 TCGA-QQ-A5V9-01 9 104335644 104335644 C T GRIN3A Missense_Mutation p.E1054K 0.08 tolerated(0.31) benign(0.146) TCGA-QQ-A5V9-01 9 21141089 21141089 C T IFNW1 Missense_Mutation p.D161N 0.16 tolerated(0.09) possibly_damaging(0.579) TCGA-QQ-A5V9-01 9 32500870 32500870 G A DDX58 Silent p.L58L 0.19 TCGA-QQ-A5V9-01 9 84608778 84608778 G T SPATA31D1 Missense_Mutation p.K1131N 0.17 tolerated(0.46) benign(0.003) TCGA-QQ-A5V9-01 9 916825 916825 G A DMRT1 Silent p.P295P 0.14 TCGA-QQ-A5V9-01 X 101859005 101859005 C T ARMCX5 3'UTR 0.73 TCGA-QQ-A5V9-01 X 134185331 134185331 C A FAM127B 3'UTR 0.08 TCGA-QQ-A5V9-01 X 154736707 154736707 G C TMLHE Missense_Mutation p.Q283E 0.41 tolerated(0.23) benign(0.034) TCGA-QQ-A5V9-01 X 56276720 56276720 A G KLF8 Missense_Mutation p.M22V 0.42 deleterious_low_confidence(0.01) benign(0.014) TCGA-QQ-A5VA-01 10 30602633 30602633 C A MTPAP Nonsense_Mutation p.E552* 0.36 TCGA-QQ-A5VA-01 11 113269853 113269853 G A ANKK1 Missense_Mutation p.V388M 0.37 tolerated(0.08) possibly_damaging(0.609) TCGA-QQ-A5VA-01 11 132205739 132205739 A G NTM 3'Flank 0.23 TCGA-QQ-A5VA-01 11 1628925 1628925 G A KRTAP5-3 Missense_Mutation p.P231S 0.17 deleterious(0.05) unknown(0) TCGA-QQ-A5VA-01 11 63678781 63678781 C T RCOR2 3'UTR 0.46 TCGA-QQ-A5VA-01 12 106631990 106631990 T A CKAP4 3'UTR 0.24 TCGA-QQ-A5VA-01 12 133249233 133249233 T C POLE Missense_Mutation p.I556V 0.21 deleterious(0.02) possibly_damaging(0.799) TCGA-QQ-A5VA-01 12 20968671 20968671 T C LST3 5'UTR 0.30 TCGA-QQ-A5VA-01 12 31648769 31648769 G C DENND5B Missense_Mutation p.P71R 0.22 deleterious(0) probably_damaging(0.991) TCGA-QQ-A5VA-01 12 55420485 55420485 C T NEUROD4 Nonsense_Mutation p.R88* 0.14 TCGA-QQ-A5VA-01 12 6940430 6940430 T C LEPREL2 Missense_Mutation p.Y345H 0.12 tolerated(0.5) probably_damaging(0.957) TCGA-QQ-A5VA-01 14 106091062 106091062 C T IGHG4 Silent p.L245L 0.06 TCGA-QQ-A5VA-01 14 106845444 106845444 G A IGHV3-35 Missense_Mutation p.T77M 0.14 deleterious_low_confidence(0.03) benign(0.275) TCGA-QQ-A5VA-01 14 21571307 21571307 G A TMEM253 Missense_Mutation p.E182K 0.40 deleterious(0.01) possibly_damaging(0.62) TCGA-QQ-A5VA-01 14 57947400 57947400 C T C14orf105 Missense_Mutation p.A190T 0.11 tolerated(0.24) benign(0.033) TCGA-QQ-A5VA-01 14 64749427 64749427 G A ESR2 Missense_Mutation p.R93C 0.16 tolerated(0.77) benign(0.001) TCGA-QQ-A5VA-01 14 64884678 64884679 - G MTHFD1 Frame_Shift_Ins p.L185Afs*20 0.20 TCGA-QQ-A5VA-01 15 51828727 51828727 T C DMXL2 Silent p.R650R 0.47 TCGA-QQ-A5VA-01 16 70530315 70530315 G A COG4 Silent p.L501L 0.11 TCGA-QQ-A5VA-01 16 81279115 81279115 C T BCMO1 Missense_Mutation p.R34C 0.19 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VA-01 16 85141485 85141485 C A FAM92B Silent p.L131L 0.18 TCGA-QQ-A5VA-01 16 85141486 85141486 A T FAM92B Missense_Mutation p.L131Q 0.18 deleterious(0) probably_damaging(0.969) TCGA-QQ-A5VA-01 17 47389375 47389375 C T ZNF652 Missense_Mutation p.E360K 0.15 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VA-01 17 47482200 47482200 G A PHB 3'UTR 0.15 TCGA-QQ-A5VA-01 17 5461907 5461907 C G NLRP1 Missense_Mutation p.W703C 0.11 tolerated(0.06) benign(0.014) TCGA-QQ-A5VA-01 17 7578191 7578191 A G TP53 Missense_Mutation p.Y220H 0.35 deleterious(0) probably_damaging(1) TCGA-QQ-A5VA-01 19 13865118 13865118 G A CCDC130 Missense_Mutation p.V7I 0.21 tolerated(0.08) possibly_damaging(0.771) TCGA-QQ-A5VA-01 19 19407813 19407813 G A SUGP1 Missense_Mutation p.P410S 0.12 tolerated(0.11) possibly_damaging(0.724) TCGA-QQ-A5VA-01 19 53058345 53058345 C T ZNF808 Missense_Mutation p.R726C 0.25 tolerated(0.05) probably_damaging(0.912) TCGA-QQ-A5VA-01 19 6773005 6773005 C T VAV1 Missense_Mutation p.R63C 0.10 deleterious(0) probably_damaging(0.925) TCGA-QQ-A5VA-01 1 1275822 1275822 G A DVL1 Missense_Mutation p.R223W 0.20 deleterious(0.01) probably_damaging(0.942) TCGA-QQ-A5VA-01 1 228612940 228612940 G A HIST3H3 Silent p.S29S 0.19 TCGA-QQ-A5VA-01 1 248367161 248367161 T C OR2M3 Silent p.S264S 0.33 TCGA-QQ-A5VA-01 1 53701293 53701293 C T MAGOH Missense_Mutation p.A35T 0.16 deleterious(0.05) benign(0.277) TCGA-QQ-A5VA-01 1 62921072 62921072 A T DOCK7 3'UTR 0.09 TCGA-QQ-A5VA-01 20 4706062 4706062 G A PRND 3'UTR 0.11 TCGA-QQ-A5VA-01 20 5479785 5479785 A G LINC00654 RNA 0.09 TCGA-QQ-A5VA-01 21 32491375 32491375 A T TIAM1 3'UTR 0.22 TCGA-QQ-A5VA-01 21 47532395 47532395 C T COL6A2 Silent p.S206S 0.23 TCGA-QQ-A5VA-01 22 18082831 18082831 T A ATP6V1E1 Missense_Mutation p.I133F 0.14 tolerated(0.11) benign(0.016) TCGA-QQ-A5VA-01 2 113890420 113890420 C A IL1RN Missense_Mutation p.T172N 0.14 deleterious(0.02) probably_damaging(1) TCGA-QQ-A5VA-01 2 179439275 179439275 G A TTN Missense_Mutation p.H23862Y 0.16 TCGA-QQ-A5VA-01 2 189460401 189460401 A C GULP1 3'UTR 0.14 TCGA-QQ-A5VA-01 2 1906955 1906955 C G MYT1L Missense_Mutation p.K641N 0.15 deleterious(0) probably_damaging(0.925) TCGA-QQ-A5VA-01 3 189614887 189614887 G A TP63 3'UTR 0.17 TCGA-QQ-A5VA-01 3 50609193 50609193 T C HEMK1 Missense_Mutation p.L94P 0.16 tolerated(0.13) benign(0.036) TCGA-QQ-A5VA-01 3 69105348 69105348 G C UBA3 Silent p.T390T 0.14 TCGA-QQ-A5VA-01 3 7494313 7494313 A T GRM7 Missense_Mutation p.K398N 0.15 tolerated(0.18) benign(0.165) TCGA-QQ-A5VA-01 3 97439140 97439140 A G EPHA6 Silent p.E940E 0.21 TCGA-QQ-A5VA-01 4 141302168 141302188 AGAAAACCAAGTTCTTGGACA - SCOC In_Frame_Del p.E131_Q137del 0.23 TCGA-QQ-A5VA-01 4 186379436 186379436 G A CCDC110 Nonsense_Mutation p.R769* 0.22 TCGA-QQ-A5VA-01 4 2321944 2321944 G A ZFYVE28 Silent p.D252D 0.14 TCGA-QQ-A5VA-01 4 2733687 2733687 T G FAM193A 3'UTR 0.21 TCGA-QQ-A5VA-01 4 3225176 3225176 C G HTT Missense_Mutation p.A2505G 0.14 probably_damaging(0.93) TCGA-QQ-A5VA-01 4 68784778 68784778 G A TMPRSS11A Missense_Mutation p.R292C 0.12 deleterious(0) probably_damaging(0.975) TCGA-QQ-A5VA-01 4 87023109 87023109 A G MAPK10 Missense_Mutation p.Y168H 0.48 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VA-01 5 140595444 140595444 C A PCDHB13 Silent p.G583G 0.11 TCGA-QQ-A5VA-01 5 180047941 180047941 C T FLT4 Missense_Mutation p.R745H 0.12 deleterious(0.03) benign(0.013) TCGA-QQ-A5VA-01 5 35049444 35049444 C T AGXT2 5'Flank 0.11 TCGA-QQ-A5VA-01 5 88025139 88025139 G T MEF2C Nonsense_Mutation p.S297* 0.37 TCGA-QQ-A5VA-01 6 132945357 132945357 T A TAAR2 Nonsense_Mutation p.K20* 0.18 TCGA-QQ-A5VA-01 6 38980307 38980307 G T DNAH8 Silent p.L4319L 0.18 TCGA-QQ-A5VA-01 7 121943251 121943251 G T FEZF1 Missense_Mutation p.H306N 0.14 deleterious(0) benign(0.334) TCGA-QQ-A5VA-01 7 151900117 151900117 C T KMT2C Missense_Mutation p.D1332N 0.30 probably_damaging(0.91) TCGA-QQ-A5VA-01 7 21552422 21552422 C T SP4 3'UTR 0.30 TCGA-QQ-A5VA-01 7 21553040 21553040 C T SP4 3'UTR 0.30 TCGA-QQ-A5VA-01 8 11301807 11301807 C A FAM167A Missense_Mutation p.R38S 0.30 deleterious(0) possibly_damaging(0.548) TCGA-QQ-A5VA-01 9 112141542 112141542 G T PTPN3 3'UTR 0.25 TCGA-QQ-A5VA-01 9 140409907 140409907 C T PNPLA7 Silent p.A383A 0.31 TCGA-QQ-A5VA-01 9 19300270 19300270 A G DENND4C Missense_Mutation p.I418V 0.08 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VA-01 9 21217127 21217127 C T IFNA16 Missense_Mutation p.G60R 0.18 tolerated(0.52) benign(0.029) TCGA-QQ-A5VA-01 9 34835945 34835945 G A FAM205B RNA 0.19 TCGA-QQ-A5VA-01 9 79229164 79229164 G T PRUNE2 3'UTR 0.22 TCGA-QQ-A5VA-01 X 101913699 101913699 G C GPRASP1 3'UTR 0.14 TCGA-QQ-A5VA-01 X 110463919 110463919 G A PAK3 3'UTR 0.15 TCGA-QQ-A5VA-01 X 114541124 114541124 C T LUZP4 Missense_Mutation p.R233C 0.10 tolerated(0.18) benign(0.004) TCGA-QQ-A5VA-01 X 140994549 140994549 C A MAGEC1 Nonsense_Mutation p.Y453* 0.11 TCGA-QQ-A5VA-01 X 34961413 34961413 C T FAM47B Silent p.P155P 0.77 TCGA-QQ-A5VA-01 X 37027073 37027073 G T FAM47C Missense_Mutation p.C197F 0.74 tolerated(0.69) benign(0.343) TCGA-QQ-A5VA-01 X 66765597 66765597 C T AR Silent p.S203S 0.16 TCGA-QQ-A5VB-01 10 102112204 102112204 G T SCD Missense_Mutation p.R131L 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A5VB-01 11 10529829 10529829 G T MTRNR2L8 5'UTR 0.67 TCGA-QQ-A5VB-01 11 129725724 129725724 C A TMEM45B Missense_Mutation p.D169E 0.14 deleterious(0.03) possibly_damaging(0.479) TCGA-QQ-A5VB-01 11 64418820 64418820 A G NRXN2 Missense_Mutation p.L942P 0.08 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VB-01 11 8715095 8715095 G T ST5 3'UTR 0.14 TCGA-QQ-A5VB-01 11 95504208 95504208 C - FAM76B 3'UTR 0.11 TCGA-QQ-A5VB-01 12 100994198 100994198 T C GAS2L3 Silent p.S19S 0.09 TCGA-QQ-A5VB-01 12 48890165 48890165 G C C12orf54 3'UTR 0.26 TCGA-QQ-A5VB-01 12 90028950 90028950 G C ATP2B1 Missense_Mutation p.S162C 0.18 deleterious(0.03) probably_damaging(0.998) TCGA-QQ-A5VB-01 13 114762103 114762103 C T RASA3 Missense_Mutation p.R682H 0.20 deleterious(0) probably_damaging(0.996) TCGA-QQ-A5VB-01 13 20325550 20325550 T C PSPC1 Silent p.A276A 0.36 TCGA-QQ-A5VB-01 13 66877065 66877065 C G PCDH9 3'UTR 0.19 TCGA-QQ-A5VB-01 14 102906808 102906808 C T TECPR2 Missense_Mutation p.R872W 0.07 deleterious(0.01) possibly_damaging(0.821) TCGA-QQ-A5VB-01 14 74876371 74876371 G A SYNDIG1L Missense_Mutation p.P26L 0.17 tolerated(0.29) benign(0.057) TCGA-QQ-A5VB-01 14 92251695 92251695 C A TC2N Silent p.V391V 0.20 TCGA-QQ-A5VB-01 14 94008839 94008839 A C UNC79 Missense_Mutation p.T341P 0.15 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VB-01 15 23811912 23811912 G A MKRN3 Missense_Mutation p.R328H 0.34 tolerated(0.06) probably_damaging(1) TCGA-QQ-A5VB-01 15 44028786 44028786 T C RNU6-354P 5'Flank 0.31 TCGA-QQ-A5VB-01 15 69682069 69682069 C A PAQR5 Silent p.A154A 0.13 TCGA-QQ-A5VB-01 15 83926276 83926276 G A BNC1 Missense_Mutation p.S968L 0.56 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VB-01 16 55909115 55909115 G T CES5A Intron 0.16 TCGA-QQ-A5VB-01 16 58163072 58163072 G A C16orf80 5'UTR 0.14 TCGA-QQ-A5VB-01 16 71763230 71763230 T A AP1G1 3'Flank 0.07 TCGA-QQ-A5VB-01 17 27889595 27889595 C T ABHD15 Missense_Mutation p.R464Q 0.46 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VB-01 17 39240828 39240828 G A KRTAP4-7 Missense_Mutation p.V124I 0.56 deleterious(0.05) unknown(0) TCGA-QQ-A5VB-01 17 72339230 72339230 C T KIF19 Silent p.N129N 0.21 TCGA-QQ-A5VB-01 17 7577114 7577114 C - TP53 Frame_Shift_Del p.C275Lfs*70 0.28 TCGA-QQ-A5VB-01 17 80884366 80884366 A T TBCD Missense_Mutation p.R824W 0.19 deleterious(0.01) possibly_damaging(0.566) TCGA-QQ-A5VB-01 19 13885506 13885506 G A C19orf53 Silent p.Q46Q 0.50 TCGA-QQ-A5VB-01 19 2425956 2425956 A C TMPRSS9 Missense_Mutation p.E1017A 0.38 deleterious(0.01) possibly_damaging(0.907) TCGA-QQ-A5VB-01 19 30935048 30935048 C T ZNF536 Silent p.R193R 0.09 TCGA-QQ-A5VB-01 19 4153682 4153682 G T CREB3L3 5'UTR 0.32 TCGA-QQ-A5VB-01 19 44653051 44653051 G A ZNF234 Splice_Site p.X48_splice 0.13 TCGA-QQ-A5VB-01 19 4538518 4538518 G C LRG1 Missense_Mutation p.L160V 0.16 deleterious(0.01) probably_damaging(0.999) TCGA-QQ-A5VB-01 19 59074587 59074587 C T MZF1 Missense_Mutation p.V353I 0.12 tolerated(0.3) benign(0.016) TCGA-QQ-A5VB-01 1 145112520 145112520 G C SEC22B Splice_Site 0.09 TCGA-QQ-A5VB-01 1 19593788 19593788 A G AKR7L 3'UTR 0.16 TCGA-QQ-A5VB-01 1 19638441 19638441 C A AKR7A2 Missense_Mutation p.V60L 0.25 tolerated(0.75) benign(0.02) TCGA-QQ-A5VB-01 1 205053107 205053107 C T TMEM81 Silent p.Q114Q 0.10 TCGA-QQ-A5VB-01 1 208391096 208391097 - A PLXNA2 Frame_Shift_Ins p.G58Wfs*15 0.23 TCGA-QQ-A5VB-01 1 24400760 24400760 C G MYOM3 Splice_Site p.X953_splice 0.19 TCGA-QQ-A5VB-01 1 29602104 29602104 G C PTPRU Missense_Mutation p.S430T 0.76 tolerated(0.55) benign(0.006) TCGA-QQ-A5VB-01 1 55307609 55307609 G T C1orf177 3'UTR 0.23 TCGA-QQ-A5VB-01 20 20024254 20024254 T C CRNKL1 Missense_Mutation p.Q446R 0.42 tolerated(0.25) benign(0.09) TCGA-QQ-A5VB-01 20 34171885 34171885 A G FER1L4 RNA 0.17 TCGA-QQ-A5VB-01 20 43559357 43559357 C T PABPC1L Missense_Mutation p.A410V 0.13 deleterious(0.01) benign(0.184) TCGA-QQ-A5VB-01 22 23090301 23090301 C T IGLV3-16 Silent p.F80F 0.09 TCGA-QQ-A5VB-01 22 45312449 45312449 G T PHF21B Missense_Mutation p.P92H 0.33 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-QQ-A5VB-01 2 130909414 130909414 A G SMPD4 3'UTR 0.12 TCGA-QQ-A5VB-01 2 217343021 217343021 A G SMARCAL1 Missense_Mutation p.K875R 0.63 deleterious(0.03) possibly_damaging(0.609) TCGA-QQ-A5VB-01 2 220405754 220405754 G A CHPF Missense_Mutation p.R328C 0.19 tolerated(0.11) possibly_damaging(0.601) TCGA-QQ-A5VB-01 2 228882021 228882021 C A SPHKAP Missense_Mutation p.K1183N 0.20 deleterious(0) probably_damaging(1) TCGA-QQ-A5VB-01 2 241390284 241390284 C - AC110619.2 Frame_Shift_Del p.N42Tfs*27 0.39 TCGA-QQ-A5VB-01 2 62449968 62449968 C T B3GNT2 Missense_Mutation p.H205Y 0.39 tolerated(0.4) benign(0.116) TCGA-QQ-A5VB-01 2 85804749 85804749 C T VAMP8 5'UTR 0.19 TCGA-QQ-A5VB-01 3 32995907 32995907 C T CCR4 Silent p.Y331Y 0.13 TCGA-QQ-A5VB-01 3 51432288 51432288 G A RBM15B 3'UTR 0.25 TCGA-QQ-A5VB-01 3 55514826 55514826 C T WNT5A Missense_Mutation p.A43T 0.47 tolerated(0.18) benign(0.005) TCGA-QQ-A5VB-01 3 66024027 66024027 G A MAGI1 5'Flank 0.59 TCGA-QQ-A5VB-01 3 77671492 77671492 C T ROBO2 Silent p.D1239D 0.24 TCGA-QQ-A5VB-01 4 10542196 10542196 G T CLNK Missense_Mutation p.P175H 0.40 deleterious(0) probably_damaging(1) TCGA-QQ-A5VB-01 4 158092810 158092810 T G GLRB 3'UTR 0.26 TCGA-QQ-A5VB-01 4 158234012 158234012 C T GRIA2 Silent p.N217N 0.39 TCGA-QQ-A5VB-01 4 186544971 186544971 C T SORBS2 Missense_Mutation p.V634I 0.18 tolerated(0.49) benign(0.053) TCGA-QQ-A5VB-01 4 46126056 46126056 A T GABRG1 5'UTR 0.31 TCGA-QQ-A5VB-01 4 85731189 85731189 G A WDFY3 Silent p.S732S 0.20 TCGA-QQ-A5VB-01 5 1217031 1217031 A G SLC6A19 Missense_Mutation p.T382A 0.07 tolerated(0.44) benign(0.084) TCGA-QQ-A5VB-01 5 132215131 132215131 A G AFF4 3'UTR 0.11 TCGA-QQ-A5VB-01 5 140175282 140175285 TCAG - PCDHA2 Frame_Shift_Del p.S245Ffs*4 0.55 TCGA-QQ-A5VB-01 5 140231781 140231781 G A PCDHA9 Intron 0.45 TCGA-QQ-A5VB-01 5 176887695 176887695 G A DBN1 Missense_Mutation p.R263W 0.42 deleterious(0) possibly_damaging(0.828) TCGA-QQ-A5VB-01 5 176936610 176936610 C T DOK3 Missense_Mutation p.E34K 0.60 tolerated_low_confidence(0.3) benign(0.005) TCGA-QQ-A5VB-01 6 138645275 138645275 G A KIAA1244 Missense_Mutation p.R1662Q 0.18 tolerated(0.17) possibly_damaging(0.644) TCGA-QQ-A5VB-01 6 153293556 153293556 T - FBXO5 Frame_Shift_Del p.T315Pfs*55 0.12 TCGA-QQ-A5VB-01 6 157713855 157713855 C A TMEM242 3'UTR 0.21 TCGA-QQ-A5VB-01 6 43269949 43269949 A T SLC22A7 Missense_Mutation p.N358I 0.25 deleterious(0.03) probably_damaging(1) TCGA-QQ-A5VB-01 6 45515640 45515640 T G RUNX2 3'UTR 0.19 TCGA-QQ-A5VB-01 7 111368489 111368489 G A DOCK4 Silent p.V1914V 0.40 TCGA-QQ-A5VB-01 7 151842337 151842337 C - KMT2C Frame_Shift_Del p.G4692Afs*24 0.20 TCGA-QQ-A5VB-01 7 31855612 31855612 C A PDE1C Missense_Mutation p.R640L 0.50 tolerated_low_confidence(0.33) benign(0.038) TCGA-QQ-A5VB-01 7 38725207 38725207 G T FAM183B Silent p.R133R 0.20 TCGA-QQ-A5VB-01 7 83047797 83047797 A T SEMA3E Missense_Mutation p.D153E 0.10 tolerated(1) benign(0) TCGA-QQ-A5VB-01 8 105106900 105106900 A G RIMS2 Intron 0.57 TCGA-QQ-A5VB-01 8 145579007 145579007 G A SLC52A2 5'Flank 0.24 TCGA-QQ-A5VB-01 8 163619 163619 A G RPL23AP53 RNA 0.03 TCGA-QQ-A5VB-01 8 28908583 28908583 G A HMBOX1 Missense_Mutation p.V392M 0.27 deleterious(0.02) probably_damaging(0.991) TCGA-QQ-A5VB-01 8 35650777 35650777 C T AC012215.1 Nonsense_Mutation p.Q127* 0.16 TCGA-QQ-A5VB-01 8 41519417 41519417 C T ANK1 Missense_Mutation p.D1882N 0.14 tolerated_low_confidence(0.07) benign(0.138) TCGA-QQ-A5VB-01 8 48701570 48701570 G - PRKDC Frame_Shift_Del p.P3599Lfs*2 0.41 TCGA-QQ-A5VB-01 9 124966956 124966956 T C LHX6 3'UTR 0.12 TCGA-QQ-A5VB-01 9 99150725 99150725 C T ZNF367 Missense_Mutation p.E283K 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-QQ-A5VB-01 X 140786641 140786641 T C SPANXD 5'UTR 0.18 TCGA-QQ-A5VB-01 X 140994606 140994606 T A MAGEC1 Silent p.G472G 0.06 TCGA-QQ-A5VB-01 X 155010558 155010558 A G SPRY3 3'UTR 0.06 TCGA-QQ-A5VB-01 X 52673695 52673695 C T SSX7 3'UTR 0.15 TCGA-QQ-A5VC-01 10 49371536 49371536 T C FRMPD2 Missense_Mutation p.Q1239R 0.42 tolerated(0.17) benign(0.006) TCGA-QQ-A5VC-01 11 59857211 59857211 T C MS4A2 Missense_Mutation p.S35P 0.42 tolerated(0.35) possibly_damaging(0.665) TCGA-QQ-A5VC-01 11 62286369 62286369 T C AHNAK Missense_Mutation p.N5174D 0.35 benign(0.356) TCGA-QQ-A5VC-01 11 70332048 70332048 C A SHANK2 Silent p.S1451S 0.29 TCGA-QQ-A5VC-01 11 76415291 76415291 G A RP11-672A2.3 3'Flank 0.68 TCGA-QQ-A5VC-01 11 82880377 82880377 C T PCF11 Silent p.V1000V 0.25 TCGA-QQ-A5VC-01 12 114384227 114384227 A G RBM19 Silent p.D487D 0.35 TCGA-QQ-A5VC-01 12 130834413 130834413 G T PIWIL1 Missense_Mutation p.K315N 0.30 deleterious(0) probably_damaging(0.942) TCGA-QQ-A5VC-01 12 21670153 21670153 C G GOLT1B 3'UTR 0.24 TCGA-QQ-A5VC-01 12 55524485 55524485 G A OR9K2 Silent p.L311L 0.27 TCGA-QQ-A5VC-01 12 78334106 78334106 C T NAV3 Missense_Mutation p.T84I 0.20 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VC-01 12 86383241 86383241 G T MGAT4C Missense_Mutation p.F28L 0.25 tolerated_low_confidence(0.45) benign(0.002) TCGA-QQ-A5VC-01 12 90028611 90028611 G A ATP2B1 Missense_Mutation p.T244I 0.34 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VC-01 13 103386903 103386903 C A CCDC168 Missense_Mutation p.D753Y 1.00 deleterious(0.05) probably_damaging(0.934) TCGA-QQ-A5VC-01 13 114549526 114549526 T - GAS6 Frame_Shift_Del p.N106Tfs*93 0.14 TCGA-QQ-A5VC-01 13 58206991 58206991 T C PCDH17 Missense_Mutation p.L104P 0.69 deleterious(0) probably_damaging(0.99) TCGA-QQ-A5VC-01 14 45396344 45396344 A G KLHL28 3'UTR 0.16 TCGA-QQ-A5VC-01 14 54908086 54908086 G A CNIH1 5'UTR 0.10 TCGA-QQ-A5VC-01 15 100332256 100332256 C T AC090825.1 5'Flank 0.59 TCGA-QQ-A5VC-01 15 42985060 42985060 G A STARD9 Missense_Mutation p.E3762K 0.27 benign(0.135) TCGA-QQ-A5VC-01 15 84908636 84908636 G A GOLGA6L4 Missense_Mutation p.G177E 0.23 tolerated(0.44) unknown(0) TCGA-QQ-A5VC-01 16 21458456 21458456 C T CTD-2547E10.2 RNA 0.13 TCGA-QQ-A5VC-01 16 31201106 31201106 T A FUS Missense_Mutation p.W353R 0.06 deleterious(0) possibly_damaging(0.718) TCGA-QQ-A5VC-01 16 50265726 50265726 A G PAPD5 3'UTR 0.89 TCGA-QQ-A5VC-01 16 66423366 66423366 C T CDH5 Missense_Mutation p.T241M 0.76 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VC-01 16 87734456 87734456 G C FLJ00104 3'UTR 0.27 TCGA-QQ-A5VC-01 17 22024247 22024247 A G MTRNR2L1 3'Flank 0.47 TCGA-QQ-A5VC-01 17 29667610 29667632 CTTCTTGAACAAAACCTGCATAC T NF1 Frame_Shift_Del p.L2337Ffs*2 0.75 TCGA-QQ-A5VC-01 17 38517389 38517389 G A CTD-2267D19.3 Missense_Mutation p.R49K 0.33 unknown(0) TCGA-QQ-A5VC-01 17 72667690 72667690 G T CTD-2006K23.2 3'Flank 0.52 TCGA-QQ-A5VC-01 17 74079821 74079821 C T EXOC7 Missense_Mutation p.V706M 0.32 tolerated(0.12) benign(0.095) TCGA-QQ-A5VC-01 17 78447139 78447139 A G NPTX1 Missense_Mutation p.F253S 0.26 deleterious(0) possibly_damaging(0.493) TCGA-QQ-A5VC-01 17 8383788 8383788 C T MYH10 Missense_Mutation p.E1774K 0.45 probably_damaging(0.994) TCGA-QQ-A5VC-01 18 23612405 23612405 T C SS18 Silent p.G396G 0.35 TCGA-QQ-A5VC-01 18 76754954 76754954 G A SALL3 Missense_Mutation p.C988Y 0.15 deleterious(0) possibly_damaging(0.905) TCGA-QQ-A5VC-01 19 11446434 11446434 C T RAB3D Missense_Mutation p.R85H 0.08 tolerated(0.08) probably_damaging(0.978) TCGA-QQ-A5VC-01 19 46145741 46145741 A G C19orf83 Silent p.G94G 0.48 TCGA-QQ-A5VC-01 19 51563083 51563083 C A KLK13 Missense_Mutation p.Q169H 0.33 tolerated(0.06) possibly_damaging(0.738) TCGA-QQ-A5VC-01 19 56320357 56320357 G C NLRP11 Missense_Mutation p.T540R 0.40 tolerated(0.11) benign(0.001) TCGA-QQ-A5VC-01 19 58238816 58238816 C T ZNF671 Silent p.P27P 0.45 TCGA-QQ-A5VC-01 1 110173624 110173624 C T AMPD2 Silent p.I830I 0.30 TCGA-QQ-A5VC-01 1 12382722 12382722 G A VPS13D Missense_Mutation p.V2612I 0.50 benign(0) TCGA-QQ-A5VC-01 1 152128045 152128045 G A RPTN Silent p.H510H 0.21 TCGA-QQ-A5VC-01 1 152733278 152733278 G A KPRP Missense_Mutation p.R405H 0.87 tolerated(0.11) benign(0.062) TCGA-QQ-A5VC-01 1 155161899 155161899 G A MUC1 Silent p.V78V 0.96 TCGA-QQ-A5VC-01 1 160456161 160456161 G A SLAMF6 3'UTR 0.40 TCGA-QQ-A5VC-01 1 19593931 19593931 G A AKR7L Silent p.L109L 0.40 TCGA-QQ-A5VC-01 1 41493476 41493476 C T SCMH1 3'UTR 0.53 TCGA-QQ-A5VC-01 1 60338568 60338568 G A HOOK1 Silent p.A706A 0.86 TCGA-QQ-A5VC-01 1 6637055 6637055 C T TAS1R1 Nonsense_Mutation p.R507* 0.93 TCGA-QQ-A5VC-01 1 89583344 89583344 T C GBP2 Missense_Mutation p.R181G 0.15 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VC-01 1 99470232 99470232 G C LPPR5 5'UTR 0.14 TCGA-QQ-A5VC-01 20 25755685 25755685 C T FAM182B Missense_Mutation p.E91K 0.27 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-QQ-A5VC-01 20 31022346 31022346 G A ASXL1 Missense_Mutation p.A611T 0.27 deleterious(0.05) benign(0.017) TCGA-QQ-A5VC-01 20 31643232 31643232 G T BPIFB3 Translation_Start_Site p.M1? 0.53 tolerated_low_confidence(0.32) benign(0) TCGA-QQ-A5VC-01 21 34949135 34949135 T C SON 3'UTR 0.53 TCGA-QQ-A5VC-01 21 45494288 45494288 C T TRAPPC10 Silent p.D374D 0.40 TCGA-QQ-A5VC-01 22 20458271 20458271 T C RIMBP3 Missense_Mutation p.I1011V 0.26 tolerated(0.2) benign(0.12) TCGA-QQ-A5VC-01 2 165944680 165944680 C T SCN3A 3'UTR 0.25 TCGA-QQ-A5VC-01 2 179623770 179623770 G T TTN Missense_Mutation p.T3415K 0.72 TCGA-QQ-A5VC-01 2 204293025 204293025 A G ABI2 3'UTR 0.12 TCGA-QQ-A5VC-01 2 242047682 242047682 C A PASK Silent p.L1196L 0.34 TCGA-QQ-A5VC-01 3 135864635 135864635 C T PPP2R3A 3'UTR 0.12 TCGA-QQ-A5VC-01 3 16419491 16419491 G A RFTN1 Missense_Mutation p.A187V 0.15 tolerated(0.38) benign(0.026) TCGA-QQ-A5VC-01 3 185979537 185979537 G T DGKG Missense_Mutation p.P434T 0.51 deleterious(0) probably_damaging(1) TCGA-QQ-A5VC-01 3 25685245 25685245 T C TOP2B Missense_Mutation p.M86V 0.33 tolerated(0.07) benign(0.047) TCGA-QQ-A5VC-01 3 49717990 49717990 C A APEH Missense_Mutation p.S409R 0.41 deleterious(0) benign(0.415) TCGA-QQ-A5VC-01 3 65342712 65342712 A T MAGI1 Missense_Mutation p.S1244T 1.00 deleterious(0.03) benign(0.275) TCGA-QQ-A5VC-01 3 69026829 69026829 A G EOGT Silent p.A424A 0.90 TCGA-QQ-A5VC-01 3 77651591 77651591 G T ROBO2 Missense_Mutation p.D1045Y 0.45 deleterious(0.01) possibly_damaging(0.861) TCGA-QQ-A5VC-01 4 154544148 154544148 C T KIAA0922 Missense_Mutation p.R1320W 0.32 deleterious(0.01) benign(0.249) TCGA-QQ-A5VC-01 4 188924482 188924482 A G ZFP42 Missense_Mutation p.K174R 0.23 tolerated(0.31) benign(0.014) TCGA-QQ-A5VC-01 4 42554560 42554560 C T ATP8A1 Missense_Mutation p.R494Q 0.11 tolerated(0.08) benign(0.27) TCGA-QQ-A5VC-01 5 118584531 118584531 C T DMXL1 3'UTR 0.11 TCGA-QQ-A5VC-01 5 1877773 1877773 C T IRX4 3'UTR 0.30 TCGA-QQ-A5VC-01 5 41153915 41153915 T C C6 Missense_Mutation p.K763E 0.32 tolerated(0.24) benign(0.008) TCGA-QQ-A5VC-01 5 50130780 50130780 A C PARP8 Missense_Mutation p.D798A 0.28 tolerated(0.07) benign(0.31) TCGA-QQ-A5VC-01 5 80604773 80604773 C G ZCCHC9 Missense_Mutation p.P182A 0.13 deleterious(0.01) possibly_damaging(0.839) TCGA-QQ-A5VC-01 6 145948787 145948787 G A EPM2A Missense_Mutation p.A254V 0.24 deleterious(0.02) benign(0.271) TCGA-QQ-A5VC-01 6 27100857 27100857 G C HIST1H2AG Missense_Mutation p.G3R 0.11 deleterious_low_confidence(0) unknown(0) TCGA-QQ-A5VC-01 6 32726804 32726804 G A HLA-DQB2 Missense_Mutation p.R157W 0.48 deleterious(0.01) probably_damaging(0.989) TCGA-QQ-A5VC-01 6 37321910 37321910 G A RNF8 5'UTR 0.35 TCGA-QQ-A5VC-01 6 51923201 51923201 G T PKHD1 Missense_Mutation p.L478M 0.32 deleterious(0) probably_damaging(1) TCGA-QQ-A5VC-01 6 76617358 76617358 T C MYO6 Silent p.G1071G 0.49 TCGA-QQ-A5VC-01 7 141736023 141736023 C T MGAM Missense_Mutation p.R672W 0.49 deleterious(0) probably_damaging(1) TCGA-QQ-A5VC-01 7 27169165 27169165 C G HOXA4 Missense_Mutation p.E214D 0.89 deleterious(0.03) benign(0.082) TCGA-QQ-A5VC-01 8 24157585 24157585 C A ADAM28 Missense_Mutation p.Q49K 0.30 tolerated(0.92) benign(0.01) TCGA-QQ-A5VC-01 9 137328351 137328351 C A RXRA Missense_Mutation p.S427Y 0.16 deleterious(0) probably_damaging(1) TCGA-QQ-A5VC-01 9 84563040 84563040 C A RP11-383M4.6 Intron 0.21 TCGA-QQ-A5VC-01 9 98011420 98011420 A T FANCC Missense_Mutation p.L52M 0.31 deleterious(0) probably_damaging(1) TCGA-QQ-A5VC-01 X 131351130 131351130 A G RAP2C Missense_Mutation p.L56P 0.92 deleterious(0) probably_damaging(1) TCGA-QQ-A5VC-01 X 2732466 2732466 A T XG 3'UTR 0.35 TCGA-QQ-A5VC-01 X 53223903 53223903 C G KDM5C Missense_Mutation p.E1152D 0.52 tolerated(0.11) probably_damaging(0.997) TCGA-QQ-A5VC-01 X 54978378 54978378 C T PFKFB1 Missense_Mutation p.R269H 0.39 probably_damaging(0.999) TCGA-QQ-A5VD-01 10 105063591 105063591 G A PCGF6 3'UTR 0.25 TCGA-QQ-A5VD-01 10 105063592 105063592 G C PCGF6 3'UTR 0.25 TCGA-QQ-A5VD-01 10 108334214 108334214 C T SORCS1 3'Flank 0.33 TCGA-QQ-A5VD-01 10 117059681 117059681 A G ATRNL1 Silent p.E851E 0.16 TCGA-QQ-A5VD-01 10 124516506 124516506 G A DMBT1P1 RNA 0.38 TCGA-QQ-A5VD-01 10 124516507 124516507 G A DMBT1P1 RNA 0.38 TCGA-QQ-A5VD-01 10 124545555 124545555 G A DMBT1P1 RNA 0.23 TCGA-QQ-A5VD-01 10 127569270 127569270 G A DHX32 Missense_Mutation p.P42S 0.11 deleterious(0.01) possibly_damaging(0.703) TCGA-QQ-A5VD-01 10 135197627 135197627 G A PAOX Silent p.E344E 0.24 TCGA-QQ-A5VD-01 10 135197628 135197628 G A PAOX Missense_Mutation p.D345N 0.25 deleterious(0.04) possibly_damaging(0.897) TCGA-QQ-A5VD-01 10 16957152 16957152 G A CUBN Silent p.Y2410Y 0.33 TCGA-QQ-A5VD-01 10 17165618 17165618 G A CUBN Missense_Mutation p.S153F 0.43 deleterious(0) probably_damaging(0.963) TCGA-QQ-A5VD-01 10 30900941 30900941 C T LYZL2 Silent p.K176K 0.27 TCGA-QQ-A5VD-01 10 32833209 32833209 G A CCDC7 Missense_Mutation p.E372K 0.16 tolerated(0.08) benign(0.277) TCGA-QQ-A5VD-01 10 46965865 46965865 G A SYT15 Silent p.T224T 0.12 TCGA-QQ-A5VD-01 10 50098736 50098736 C T WDFY4 Missense_Mutation p.T2427M 0.33 tolerated(0.18) benign(0.004) TCGA-QQ-A5VD-01 10 70719688 70719688 C T DDX21 Missense_Mutation p.P72S 0.21 tolerated_low_confidence(0.24) benign(0.002) TCGA-QQ-A5VD-01 11 102567514 102567514 G A MMP27 Silent p.L224L 0.12 TCGA-QQ-A5VD-01 11 104825485 104825485 G A CASP4 Missense_Mutation p.P84L 0.25 tolerated(0.29) benign(0.063) TCGA-QQ-A5VD-01 11 108381888 108381888 C T EXPH5 Missense_Mutation p.G1449E 0.26 tolerated(0.15) possibly_damaging(0.854) TCGA-QQ-A5VD-01 11 118034191 118034191 G A SCN2B 3'UTR 0.15 TCGA-QQ-A5VD-01 11 121016456 121016456 G A TECTA Missense_Mutation p.G1246S 0.15 tolerated(0.13) benign(0.01) TCGA-QQ-A5VD-01 11 121016457 121016457 G A TECTA Missense_Mutation p.G1246D 0.15 tolerated(0.14) benign(0.009) TCGA-QQ-A5VD-01 11 122928397 122928397 A T HSPA8 3'UTR 0.19 TCGA-QQ-A5VD-01 11 1270733 1270733 G A MUC5B Missense_Mutation p.G4208E 0.11 probably_damaging(0.998) TCGA-QQ-A5VD-01 11 15096298 15096298 C T CALCB Missense_Mutation p.L12F 0.14 tolerated(0.22) benign(0.036) TCGA-QQ-A5VD-01 11 18759455 18759455 C T PTPN5 Silent p.R324R 0.15 TCGA-QQ-A5VD-01 11 2018056 2018056 C T H19 RNA 0.17 TCGA-QQ-A5VD-01 11 26714026 26714026 C T SLC5A12 Intron 0.21 TCGA-QQ-A5VD-01 11 4703889 4703889 C T OR51E2 Missense_Mutation p.G18E 0.10 deleterious(0.01) probably_damaging(1) TCGA-QQ-A5VD-01 11 47445599 47445599 C T PSMC3 Missense_Mutation p.E197K 0.18 deleterious(0) possibly_damaging(0.593) TCGA-QQ-A5VD-01 11 49974639 49974639 C T OR4C13 Missense_Mutation p.S222F 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-QQ-A5VD-01 11 49974640 49974640 C T OR4C13 Silent p.S222S 0.13 TCGA-QQ-A5VD-01 11 5529535 5529535 C T UBQLN3 Silent p.E418E 0.31 TCGA-QQ-A5VD-01 11 56380933 56380933 C T OR5M1 Missense_Mutation p.G16R 0.21 deleterious(0.02) benign(0.32) TCGA-QQ-A5VD-01 11 57946903 57946903 G A OR9Q1 Intron 0.18 TCGA-QQ-A5VD-01 11 57946904 57946904 G A OR9Q1 Intron 0.18 TCGA-QQ-A5VD-01 11 58978337 58978337 G A MPEG1 Silent p.L668L 0.20 TCGA-QQ-A5VD-01 11 61512500 61512500 C T DAGLA 3'UTR 0.08 TCGA-QQ-A5VD-01 11 6265537 6265537 C T CNGA4 Silent p.P542P 0.12 TCGA-QQ-A5VD-01 11 62849038 62849038 G A SLC22A24 Silent p.T462T 0.23 TCGA-QQ-A5VD-01 11 63057946 63057946 G A SLC22A10 Silent p.G103G 0.26 TCGA-QQ-A5VD-01 11 63064849 63064849 C T SLC22A10 Missense_Mutation p.P194L 0.18 deleterious(0) probably_damaging(0.996) TCGA-QQ-A5VD-01 11 63764973 63764973 C T OTUB1 Silent p.V257V 0.14 TCGA-QQ-A5VD-01 11 6415210 6415210 C T SMPD1 Silent p.S475S 0.32 TCGA-QQ-A5VD-01 11 66743715 66743715 C T C11orf86 Missense_Mutation p.S114F 0.14 deleterious_low_confidence(0) benign(0.144) TCGA-QQ-A5VD-01 11 66743716 66743716 C T C11orf86 Silent p.S114S 0.14 TCGA-QQ-A5VD-01 11 67287292 67287292 G A CABP2 Silent p.L203L 0.18 TCGA-QQ-A5VD-01 11 68478401 68478401 T A MTL5 Missense_Mutation p.E425D 0.16 tolerated(0.13) benign(0.037) TCGA-QQ-A5VD-01 11 7021487 7021487 C T ZNF214 Missense_Mutation p.G476E 0.20 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 11 7021488 7021488 C T ZNF214 Missense_Mutation p.G476R 0.20 deleterious(0.03) probably_damaging(1) TCGA-QQ-A5VD-01 11 70319210 70319210 G A SHANK2 Missense_Mutation p.P1773S 0.19 tolerated(0.1) possibly_damaging(0.641) TCGA-QQ-A5VD-01 11 7324340 7324340 C T SYT9 Silent p.F72F 0.16 TCGA-QQ-A5VD-01 11 73745133 73745133 G A C2CD3 3'Flank 0.13 TCGA-QQ-A5VD-01 11 82668554 82668554 C T RP11-659G9.1 RNA 0.09 TCGA-QQ-A5VD-01 11 85375532 85375532 G A CREBZF Missense_Mutation p.L130F 0.18 deleterious_low_confidence(0.04) probably_damaging(0.986) TCGA-QQ-A5VD-01 11 92523348 92523348 C T FAT3 Silent p.D1525D 0.19 TCGA-QQ-A5VD-01 11 92523349 92523349 C G FAT3 Missense_Mutation p.H1526D 0.19 probably_damaging(0.992) TCGA-QQ-A5VD-01 12 100200360 100200360 G T ANKS1B Missense_Mutation p.P164H 0.14 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VD-01 12 100200361 100200361 G A ANKS1B Missense_Mutation p.P164S 0.15 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VD-01 12 107393622 107393622 G A CRY1 Missense_Mutation p.P282S 0.15 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 12 110421493 110421493 G A GIT2 Missense_Mutation p.H138Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 12 120750865 120750865 G A SIRT4 3'UTR 0.21 TCGA-QQ-A5VD-01 12 14825853 14825853 A G GUCY2C Missense_Mutation p.V375A 0.13 tolerated(0.11) benign(0.065) TCGA-QQ-A5VD-01 12 21445200 21445200 C G SLCO1A2 Missense_Mutation p.G503A 0.20 tolerated(0.17) possibly_damaging(0.803) TCGA-QQ-A5VD-01 12 21445201 21445201 C T SLCO1A2 Missense_Mutation p.G503R 0.19 tolerated(0.27) benign(0.33) TCGA-QQ-A5VD-01 12 34179346 34179346 C T ALG10 Silent p.L306L 0.14 TCGA-QQ-A5VD-01 12 41961623 41961623 C T PDZRN4 Silent p.F502F 0.28 TCGA-QQ-A5VD-01 12 48535750 48535750 C T PFKM Silent p.L589L 0.24 TCGA-QQ-A5VD-01 12 49072824 49072824 G A KANSL2 Silent p.P180P 0.19 TCGA-QQ-A5VD-01 12 50190165 50190165 G A NCKAP5L Missense_Mutation p.S493L 0.29 tolerated(0.16) possibly_damaging(0.528) TCGA-QQ-A5VD-01 12 52369177 52369177 G A ACVR1B Missense_Mutation p.E74K 0.17 tolerated(0.19) benign(0.002) TCGA-QQ-A5VD-01 12 53680600 53680600 C T ESPL1 Silent p.V1360V 0.11 TCGA-QQ-A5VD-01 12 53680601 53680601 C T ESPL1 Missense_Mutation p.P1361S 0.11 tolerated(0.06) benign(0.222) TCGA-QQ-A5VD-01 12 54929946 54929946 C T NCKAP1L Missense_Mutation p.A997V 0.27 tolerated(0.33) possibly_damaging(0.585) TCGA-QQ-A5VD-01 12 56090737 56090737 C A ITGA7 Silent p.V565V 0.07 TCGA-QQ-A5VD-01 12 56431525 56431525 T G IKZF4 3'UTR 0.15 TCGA-QQ-A5VD-01 12 56431526 56431526 T A IKZF4 3'UTR 0.14 TCGA-QQ-A5VD-01 12 63953328 63953328 T G DPY19L2 3'UTR 0.15 TCGA-QQ-A5VD-01 12 6973341 6973341 G A USP5 Silent p.L742L 0.21 TCGA-QQ-A5VD-01 12 70824531 70824531 G A KCNMB4 3'UTR 0.20 TCGA-QQ-A5VD-01 12 70913956 70913956 A C PTPRB 3'UTR 0.23 TCGA-QQ-A5VD-01 12 71533551 71533551 C T TSPAN8 Missense_Mutation p.M67I 0.33 deleterious(0.04) possibly_damaging(0.897) TCGA-QQ-A5VD-01 12 7459150 7459150 C T ACSM4 Missense_Mutation p.P75S 0.24 deleterious(0.02) benign(0.316) TCGA-QQ-A5VD-01 12 7459151 7459151 C T ACSM4 Missense_Mutation p.P75L 0.25 tolerated(0.14) benign(0.266) TCGA-QQ-A5VD-01 12 78516202 78516202 C T NAV3 Missense_Mutation p.S1411L 0.20 tolerated(0.21) probably_damaging(0.992) TCGA-QQ-A5VD-01 12 93772023 93772023 C T NUDT4 5'UTR 0.13 TCGA-QQ-A5VD-01 12 93772024 93772024 C T NUDT4 5'UTR 0.12 TCGA-QQ-A5VD-01 12 99145269 99145269 C T ANKS1B Missense_Mutation p.G1179E 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 12 99145270 99145270 C T ANKS1B Missense_Mutation p.G1179R 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 13 107220058 107220058 C T ARGLU1 Silent p.R70R 0.20 TCGA-QQ-A5VD-01 13 107220059 107220059 C T ARGLU1 Missense_Mutation p.R70Q 0.20 tolerated(0.11) unknown(0) TCGA-QQ-A5VD-01 13 20763342 20763342 G A GJB2 Missense_Mutation p.R127C 0.33 deleterious(0) benign(0.423) TCGA-QQ-A5VD-01 13 20763343 20763343 G A GJB2 Silent p.V126V 0.33 TCGA-QQ-A5VD-01 13 25367256 25367256 G A RNF17 Missense_Mutation p.D338N 0.30 tolerated(0.43) possibly_damaging(0.463) TCGA-QQ-A5VD-01 13 39265511 39265511 C T FREM2 Missense_Mutation p.R1344C 0.24 deleterious(0.01) probably_damaging(0.917) TCGA-QQ-A5VD-01 13 39587630 39587630 G A PROSER1 Missense_Mutation p.P587S 0.19 tolerated_low_confidence(0.23) benign(0.014) TCGA-QQ-A5VD-01 13 40253752 40253752 G A COG6 Silent p.T206T 0.15 TCGA-QQ-A5VD-01 13 48954210 48954210 C T RB1 Nonsense_Mutation p.Q471* 0.21 TCGA-QQ-A5VD-01 13 49039374 49039374 C T RB1 Nonsense_Mutation p.R787* 0.16 TCGA-QQ-A5VD-01 13 53624877 53624877 G A OLFM4 Missense_Mutation p.D502N 0.26 tolerated(0.09) benign(0.246) TCGA-QQ-A5VD-01 13 76374986 76374986 C T LMO7 5'UTR 0.24 TCGA-QQ-A5VD-01 13 76374987 76374987 C T LMO7 5'UTR 0.24 TCGA-QQ-A5VD-01 13 78318545 78318545 C T SLAIN1 Silent p.I134I 0.18 TCGA-QQ-A5VD-01 14 102359442 102359442 C G PPP2R5C Silent p.P296P 0.17 TCGA-QQ-A5VD-01 14 102359443 102359443 C T PPP2R5C Nonsense_Mutation p.Q297* 0.20 TCGA-QQ-A5VD-01 14 103398921 103398921 G A CDC42BPB 3'UTR 0.22 TCGA-QQ-A5VD-01 14 20443867 20443867 T C OR4K15 Silent p.L64L 0.15 TCGA-QQ-A5VD-01 14 20692781 20692781 C T OR11H6 Missense_Mutation p.P305S 0.26 deleterious(0.01) probably_damaging(0.989) TCGA-QQ-A5VD-01 14 20943187 20943187 C T PNP Intron 0.25 TCGA-QQ-A5VD-01 14 23994485 23994485 C T ZFHX2 Missense_Mutation p.E1556K 0.20 probably_damaging(0.993) TCGA-QQ-A5VD-01 14 44974210 44974210 G A FSCB Missense_Mutation p.P661S 0.21 tolerated(0.2) unknown(0) TCGA-QQ-A5VD-01 14 53522448 53522448 C T DDHD1 Silent p.V725V 0.23 TCGA-QQ-A5VD-01 14 59113171 59113171 G A DACT1 Silent p.K610K 0.24 TCGA-QQ-A5VD-01 14 77924477 77924477 C T AHSA1 5'UTR 0.16 TCGA-QQ-A5VD-01 14 77924478 77924478 C T AHSA1 5'UTR 0.15 TCGA-QQ-A5VD-01 14 78184492 78184492 G C SNW1 Missense_Mutation p.P517R 0.18 tolerated(0.08) benign(0.007) TCGA-QQ-A5VD-01 14 78184493 78184493 G A SNW1 Missense_Mutation p.P517S 0.18 tolerated(0.19) benign(0.012) TCGA-QQ-A5VD-01 14 81259149 81259149 C T CEP128 Silent p.E505E 0.22 TCGA-QQ-A5VD-01 14 88693813 88693813 C T KCNK10 Missense_Mutation p.G196E 0.27 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 14 88693814 88693814 C T KCNK10 Missense_Mutation p.G196R 0.31 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 14 90873505 90873505 C T CALM1 3'UTR 0.15 TCGA-QQ-A5VD-01 14 93119341 93119341 C T RIN3 Silent p.T649T 0.25 TCGA-QQ-A5VD-01 14 93119342 93119342 C T RIN3 Nonsense_Mutation p.Q650* 0.25 TCGA-QQ-A5VD-01 14 93652900 93652900 C T TMEM251 Missense_Mutation p.P132S 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 14 94847281 94847281 C T SERPINA1 Missense_Mutation p.G282R 0.26 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 14 96389338 96389338 C T LINC00617 RNA 0.43 TCGA-QQ-A5VD-01 15 27193485 27193485 G A GABRA5 3'UTR 0.25 TCGA-QQ-A5VD-01 15 37242598 37242598 G A MEIS2 Missense_Mutation p.P302S 0.28 deleterious(0.02) probably_damaging(0.913) TCGA-QQ-A5VD-01 15 40913904 40913904 A G CASC5 Missense_Mutation p.E507G 0.20 tolerated(0.05) probably_damaging(0.957) TCGA-QQ-A5VD-01 15 41854857 41854857 G A TYRO3 Nonsense_Mutation p.W174* 0.24 TCGA-QQ-A5VD-01 15 42678474 42678474 C T CAPN3 Silent p.F163F 0.28 TCGA-QQ-A5VD-01 15 42678475 42678475 C T CAPN3 Missense_Mutation p.H164Y 0.28 deleterious(0.01) probably_damaging(1) TCGA-QQ-A5VD-01 15 43814473 43814473 C T MAP1A Missense_Mutation p.P268S 0.32 probably_damaging(0.978) TCGA-QQ-A5VD-01 15 44925817 44925817 G A SPG11 Nonsense_Mutation p.Q541* 0.10 TCGA-QQ-A5VD-01 15 45457031 45457031 G A DUOX1 Missense_Mutation p.E1530K 0.25 deleterious(0) possibly_damaging(0.854) TCGA-QQ-A5VD-01 15 50215658 50215658 G A ATP8B4 Missense_Mutation p.S559F 0.22 deleterious(0) possibly_damaging(0.46) TCGA-QQ-A5VD-01 15 50215659 50215659 A C ATP8B4 Missense_Mutation p.S559A 0.21 deleterious(0) benign(0.006) TCGA-QQ-A5VD-01 15 50540514 50540514 C T HDC Silent p.R356R 0.12 TCGA-QQ-A5VD-01 15 50540515 50540515 C T HDC Missense_Mutation p.R356Q 0.12 deleterious(0) probably_damaging(0.988) TCGA-QQ-A5VD-01 15 51914837 51914837 C T DMXL2 5'Flank 0.27 TCGA-QQ-A5VD-01 15 51914838 51914838 C T DMXL2 5'Flank 0.29 TCGA-QQ-A5VD-01 15 52246732 52246734 TCT CC LEO1 Frame_Shift_Del p.G430Efs*11 0.21 TCGA-QQ-A5VD-01 15 54305705 54305705 C T UNC13C Missense_Mutation p.T202I 0.15 deleterious_low_confidence(0) benign(0.157) TCGA-QQ-A5VD-01 15 54305706 54305706 C T UNC13C Silent p.T202T 0.15 TCGA-QQ-A5VD-01 15 58837997 58837997 C T LIPC Missense_Mutation p.P211S 0.26 deleterious(0.01) possibly_damaging(0.831) TCGA-QQ-A5VD-01 15 58837998 58837998 C T LIPC Missense_Mutation p.P211L 0.24 deleterious(0.01) possibly_damaging(0.739) TCGA-QQ-A5VD-01 15 62945393 62945393 C T TLN2 Nonsense_Mutation p.Q133* 0.16 TCGA-QQ-A5VD-01 15 66015249 66015249 G A DENND4A Missense_Mutation p.P509S 0.25 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 15 73029293 73029293 C T BBS4 Missense_Mutation p.T480M 0.15 deleterious_low_confidence(0.02) benign(0.003) TCGA-QQ-A5VD-01 15 73617297 73617297 T G HCN4 Silent p.G659G 0.25 TCGA-QQ-A5VD-01 15 73617298 73617298 C T HCN4 Missense_Mutation p.G659E 0.26 deleterious(0) unknown(0) TCGA-QQ-A5VD-01 15 76071746 76071746 G A RP11-24M17.5 RNA 0.17 TCGA-QQ-A5VD-01 15 77907555 77907555 C T LINGO1 Missense_Mutation p.D232N 0.24 tolerated(0.58) possibly_damaging(0.515) TCGA-QQ-A5VD-01 15 77907556 77907556 C T LINGO1 Silent p.R231R 0.25 TCGA-QQ-A5VD-01 15 78917389 78917389 G A CHRNB4 3'UTR 0.21 TCGA-QQ-A5VD-01 15 78917390 78917390 G A CHRNB4 3'UTR 0.20 TCGA-QQ-A5VD-01 15 82444423 82444423 A G EFTUD1 Missense_Mutation p.M791T 0.34 tolerated(0.63) benign(0) TCGA-QQ-A5VD-01 15 83334005 83334005 G A AP3B2 Intron 0.16 TCGA-QQ-A5VD-01 15 85165025 85165025 C T ZSCAN2 Silent p.L533L 0.14 TCGA-QQ-A5VD-01 15 90799449 90799449 G A TTLL13 Missense_Mutation p.G209R 0.48 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VD-01 16 17196924 17196924 G A XYLT1 3'UTR 0.21 TCGA-QQ-A5VD-01 16 19132639 19132639 T G ITPRIPL2 3'UTR 0.26 TCGA-QQ-A5VD-01 16 2027653 2027653 C T TBL3 Silent p.S627S 0.17 TCGA-QQ-A5VD-01 16 2027654 2027654 C T TBL3 Nonsense_Mutation p.R628* 0.18 TCGA-QQ-A5VD-01 16 23647329 23647329 C T PALB2 Missense_Mutation p.E180K 0.17 tolerated(0.11) benign(0.035) TCGA-QQ-A5VD-01 16 24226873 24226873 C T PRKCB 3'UTR 0.30 TCGA-QQ-A5VD-01 16 2815847 2815847 C T SRRM2 Missense_Mutation p.S1773F 0.25 unknown(0) TCGA-QQ-A5VD-01 16 28497920 28497920 G A CLN3 Missense_Mutation p.S171F 0.17 deleterious(0) probably_damaging(0.94) TCGA-QQ-A5VD-01 16 29824915 29824915 G A PRRT2 Silent p.E180E 0.13 TCGA-QQ-A5VD-01 16 3614928 3614928 C T NLRC3 Missense_Mutation p.S84N 0.29 tolerated(0.08) benign(0.01) TCGA-QQ-A5VD-01 16 52473609 52473609 C T TOX3 Missense_Mutation p.G420E 0.16 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-QQ-A5VD-01 16 57719753 57719753 G A GPR97 Silent p.L485L 0.26 TCGA-QQ-A5VD-01 16 57719754 57719754 G C GPR97 Missense_Mutation p.V486L 0.27 tolerated(0.99) benign(0.022) TCGA-QQ-A5VD-01 16 66756050 66756050 G A DYNC1LI2 3'UTR 0.12 TCGA-QQ-A5VD-01 16 67174002 67174002 C T C16orf70 Silent p.F259F 0.14 TCGA-QQ-A5VD-01 16 67228596 67228596 A T E2F4 Missense_Mutation p.N174I 0.10 deleterious(0.01) benign(0.184) TCGA-QQ-A5VD-01 16 67229880 67229880 T G E2F4 Missense_Mutation p.F335C 0.28 deleterious(0.03) benign(0.002) TCGA-QQ-A5VD-01 16 74983665 74983665 G A WDR59 Missense_Mutation p.L120F 0.21 tolerated(0.07) benign(0.027) TCGA-QQ-A5VD-01 16 79634564 79634564 G A MAF 5'UTR 0.20 TCGA-QQ-A5VD-01 16 84203831 84203831 G A DNAAF1 Missense_Mutation p.G466E 0.08 tolerated_low_confidence(0.73) possibly_damaging(0.682) TCGA-QQ-A5VD-01 16 84203832 84203832 G A DNAAF1 Silent p.G466G 0.08 TCGA-QQ-A5VD-01 16 88500752 88500752 C T ZNF469 Missense_Mutation p.P2264S 0.14 benign(0.062) TCGA-QQ-A5VD-01 16 90072514 90072514 C T DBNDD1 3'UTR 0.11 TCGA-QQ-A5VD-01 17 10448734 10448734 C T MYH2 Missense_Mutation p.G145D 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-QQ-A5VD-01 17 10448735 10448735 C A MYH2 Missense_Mutation p.G145C 0.22 deleterious(0) probably_damaging(0.996) TCGA-QQ-A5VD-01 17 16469915 16469915 G A ZNF287 Missense_Mutation p.S142F 0.16 tolerated(0.35) benign(0.323) TCGA-QQ-A5VD-01 17 1839013 1839013 A G RTN4RL1 3'UTR 0.19 TCGA-QQ-A5VD-01 17 19687131 19687131 G A ULK2 Missense_Mutation p.S780F 0.19 tolerated(0.13) possibly_damaging(0.839) TCGA-QQ-A5VD-01 17 26114707 26114707 T G NOS2 Missense_Mutation p.K155T 0.17 deleterious(0.02) benign(0.23) TCGA-QQ-A5VD-01 17 27233377 27233377 G A PHF12 Silent p.L947L 0.16 TCGA-QQ-A5VD-01 17 33772391 33772391 C T SLFN13 Silent p.R103R 0.16 TCGA-QQ-A5VD-01 17 33772392 33772392 C T SLFN13 Missense_Mutation p.R103K 0.16 tolerated(0.86) benign(0.007) TCGA-QQ-A5VD-01 17 40947104 40947104 C T WNK4 Missense_Mutation p.P889S 0.11 deleterious(0.04) unknown(0) TCGA-QQ-A5VD-01 17 41165591 41165591 C T IFI35 Silent p.F160F 0.33 TCGA-QQ-A5VD-01 17 45891082 45891082 G A OSBPL7 Silent p.D490D 0.10 TCGA-QQ-A5VD-01 17 48213002 48213002 G A PPP1R9B Silent p.F770F 0.20 TCGA-QQ-A5VD-01 17 48755230 48755230 G A ABCC3 Silent p.R1168R 0.10 TCGA-QQ-A5VD-01 17 48755231 48755231 G C ABCC3 Missense_Mutation p.D1169H 0.10 deleterious(0.01) probably_damaging(0.93) TCGA-QQ-A5VD-01 17 4925690 4925690 G A KIF1C Missense_Mutation p.E772K 0.16 deleterious_low_confidence(0) possibly_damaging(0.636) TCGA-QQ-A5VD-01 17 53488776 53488776 G A MMD Silent p.F37F 0.24 TCGA-QQ-A5VD-01 17 5424853 5424853 G A NLRP1 Silent p.S1258S 0.25 TCGA-QQ-A5VD-01 17 5424854 5424854 G A NLRP1 Missense_Mutation p.S1258F 0.28 deleterious(0) probably_damaging(0.981) TCGA-QQ-A5VD-01 17 56345360 56345360 C T LPO 3'UTR 0.33 TCGA-QQ-A5VD-01 17 56345361 56345361 C T LPO 3'UTR 0.33 TCGA-QQ-A5VD-01 17 6360946 6360946 G A PITPNM3 Missense_Mutation p.R863W 0.09 deleterious(0) probably_damaging(0.988) TCGA-QQ-A5VD-01 17 6360947 6360947 G A PITPNM3 Silent p.G862G 0.09 TCGA-QQ-A5VD-01 17 66979869 66979869 G A ABCA9 Nonsense_Mutation p.Q1541* 0.29 TCGA-QQ-A5VD-01 17 6799663 6799663 C T AC027763.2 Intron 0.15 TCGA-QQ-A5VD-01 17 68173319 68173319 C T KCNJ2 3'UTR 0.11 TCGA-QQ-A5VD-01 17 73163917 73163917 C G SUMO2 3'UTR 0.10 TCGA-QQ-A5VD-01 17 73163918 73163918 C T SUMO2 3'UTR 0.10 TCGA-QQ-A5VD-01 17 7384732 7384732 T G SLC35G6 5'UTR 0.16 TCGA-QQ-A5VD-01 17 7384733 7384733 C T SLC35G6 5'UTR 0.18 TCGA-QQ-A5VD-01 17 74006348 74006348 C T EVPL Missense_Mutation p.E980K 0.25 tolerated(0.14) possibly_damaging(0.587) TCGA-QQ-A5VD-01 17 74622777 74622777 G A ST6GALNAC1 Missense_Mutation p.L423F 0.09 benign(0.078) TCGA-QQ-A5VD-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.27 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 17 7577540 7577540 G A TP53 Silent p.N247N 0.27 TCGA-QQ-A5VD-01 17 76567361 76567361 C T DNAH17 Missense_Mutation p.G278R 0.19 benign(0.09) TCGA-QQ-A5VD-01 17 77111712 77111712 G A RBFOX3 Missense_Mutation p.P29L 0.34 deleterious_low_confidence(0) probably_damaging(0.951) TCGA-QQ-A5VD-01 18 13645200 13645200 C T LDLRAD4 Silent p.F155F 0.18 TCGA-QQ-A5VD-01 18 21055005 21055005 C T RIOK3 Silent p.A369A 0.15 TCGA-QQ-A5VD-01 18 21055006 21055006 C T RIOK3 Missense_Mutation p.P370S 0.15 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VD-01 18 2762122 2762122 C T SMCHD1 Missense_Mutation p.P1485L 0.17 deleterious(0.01) possibly_damaging(0.856) TCGA-QQ-A5VD-01 18 31251776 31251776 C T ASXL3 Missense_Mutation p.P221S 0.22 probably_damaging(0.998) TCGA-QQ-A5VD-01 18 31432346 31432346 C T NOL4 3'UTR 0.24 TCGA-QQ-A5VD-01 18 32843492 32843492 C T ZSCAN30 Missense_Mutation p.A180T 0.20 tolerated(0.61) benign(0.002) TCGA-QQ-A5VD-01 18 45555466 45555466 G T ZBTB7C 3'UTR 0.13 TCGA-QQ-A5VD-01 18 55153258 55153258 C T ONECUT2 3'UTR 0.42 TCGA-QQ-A5VD-01 18 59824376 59824376 G A PIGN Missense_Mutation p.P143L 0.19 deleterious(0) possibly_damaging(0.467) TCGA-QQ-A5VD-01 18 59824377 59824377 G A PIGN Missense_Mutation p.P143S 0.17 tolerated(0.21) benign(0.053) TCGA-QQ-A5VD-01 18 61233951 61233951 G A SERPINB12 Missense_Mutation p.D309N 0.11 tolerated(0.2) benign(0.03) TCGA-QQ-A5VD-01 18 6958555 6958555 G A LAMA1 Missense_Mutation p.P2629S 0.18 deleterious(0.04) probably_damaging(1) TCGA-QQ-A5VD-01 19 10419439 10419439 C T ZGLP1 5'UTR 0.10 TCGA-QQ-A5VD-01 19 11591448 11591448 C T ELAVL3 5'UTR 0.32 TCGA-QQ-A5VD-01 19 11591449 11591449 C T ELAVL3 5'UTR 0.33 TCGA-QQ-A5VD-01 19 12575311 12575311 G A ZNF709 Silent p.P475P 0.29 TCGA-QQ-A5VD-01 19 12575312 12575312 G A ZNF709 Missense_Mutation p.P475L 0.29 tolerated(0.08) probably_damaging(0.936) TCGA-QQ-A5VD-01 19 13010123 13010123 C T SYCE2 3'UTR 0.28 TCGA-QQ-A5VD-01 19 13035592 13035592 G A FARSA Silent p.S352S 0.22 TCGA-QQ-A5VD-01 19 13035593 13035593 G T FARSA Missense_Mutation p.S352Y 0.22 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 19 1510156 1510156 G A ADAMTSL5 Silent p.F118F 0.20 TCGA-QQ-A5VD-01 19 16243105 16243105 T G RAB8A Silent p.V205V 0.13 TCGA-QQ-A5VD-01 19 16243106 16243106 C T RAB8A Missense_Mutation p.L206F 0.13 deleterious_low_confidence(0.03) benign(0.078) TCGA-QQ-A5VD-01 19 16631313 16631313 G A CHERP Missense_Mutation p.P736L 0.29 tolerated(0.79) benign(0.001) TCGA-QQ-A5VD-01 19 16631314 16631314 G A CHERP Missense_Mutation p.P736S 0.29 tolerated(0.82) benign(0) TCGA-QQ-A5VD-01 19 17001554 17001554 G A F2RL3 3'UTR 0.30 TCGA-QQ-A5VD-01 19 17001555 17001555 G A F2RL3 3'UTR 0.30 TCGA-QQ-A5VD-01 19 1954140 1954140 C T CSNK1G2 Intron 0.29 TCGA-QQ-A5VD-01 19 21326387 21326387 G A ZNF431 Missense_Mutation p.E13K 0.15 tolerated_low_confidence(0.89) benign(0.007) TCGA-QQ-A5VD-01 19 35550807 35550807 G A HPN Missense_Mutation p.R107Q 0.26 tolerated(0.59) benign(0.009) TCGA-QQ-A5VD-01 19 36940504 36940504 G A ZNF566 Missense_Mutation p.P212L 0.23 tolerated(0.7) benign(0.007) TCGA-QQ-A5VD-01 19 39051805 39051805 C T RYR1 Missense_Mutation p.S4112L 0.26 benign(0) TCGA-QQ-A5VD-01 19 39961029 39961030 CC T SUPT5H Frame_Shift_Del p.P515Sfs*39 0.28 TCGA-QQ-A5VD-01 19 40362864 40362864 G A FCGBP Missense_Mutation p.P5069L 0.25 probably_damaging(0.999) TCGA-QQ-A5VD-01 19 42912445 42912445 C T LIPE Silent p.Q483Q 0.18 TCGA-QQ-A5VD-01 19 43031473 43031473 C T CEACAM1 Silent p.G48G 0.19 TCGA-QQ-A5VD-01 19 43226144 43226144 G A PSG3 3'UTR 0.20 TCGA-QQ-A5VD-01 19 43519381 43519381 T C PSG11 Missense_Mutation p.Q284R 0.20 tolerated(0.13) benign(0.026) TCGA-QQ-A5VD-01 19 43709745 43709745 T G PSG4 5'UTR 0.17 TCGA-QQ-A5VD-01 19 43709746 43709746 C T PSG4 5'UTR 0.17 TCGA-QQ-A5VD-01 19 44378125 44378125 G A ZNF404 Missense_Mutation p.L81F 0.22 tolerated(0.11) benign(0.001) TCGA-QQ-A5VD-01 19 44378126 44378126 G A ZNF404 Silent p.N80N 0.22 TCGA-QQ-A5VD-01 19 47858298 47858298 C T DHX34 Silent p.V236V 0.24 TCGA-QQ-A5VD-01 19 51919600 51919600 C T SIGLEC10 Missense_Mutation p.D240N 0.26 tolerated(0.21) benign(0.002) TCGA-QQ-A5VD-01 19 51981872 51981872 C T CEACAM18 Silent p.L53L 0.15 TCGA-QQ-A5VD-01 19 52443920 52443920 C T ZNF613 Missense_Mutation p.P65S 0.13 tolerated(0.05) benign(0.031) TCGA-QQ-A5VD-01 19 52443921 52443921 C T ZNF613 Missense_Mutation p.P65L 0.13 tolerated(0.16) benign(0.004) TCGA-QQ-A5VD-01 19 53857155 53857155 C T ZNF845 3'UTR 0.16 TCGA-QQ-A5VD-01 19 54584624 54584624 C T TARM1 5'UTR 0.07 TCGA-QQ-A5VD-01 19 54584625 54584625 C T TARM1 5'UTR 0.08 TCGA-QQ-A5VD-01 19 58966802 58966802 C T ZNF324B Missense_Mutation p.S164F 0.28 deleterious(0.01) probably_damaging(0.935) TCGA-QQ-A5VD-01 19 58966803 58966803 C T ZNF324B Silent p.S164S 0.28 TCGA-QQ-A5VD-01 19 7806570 7806570 C T CD209 3'UTR 0.30 TCGA-QQ-A5VD-01 19 9086552 9086552 G A MUC16 Missense_Mutation p.P1755S 0.25 unknown(0) TCGA-QQ-A5VD-01 1 101006718 101006718 G A GPR88 3'UTR 0.13 TCGA-QQ-A5VD-01 1 102270472 102270472 C T OLFM3 Splice_Site p.X234_splice 0.26 TCGA-QQ-A5VD-01 1 111827805 111827805 C T CHIAP2 RNA 0.32 TCGA-QQ-A5VD-01 1 11590009 11590009 G A PTCHD2 Missense_Mutation p.G1032E 0.13 deleterious(0.03) benign(0.013) TCGA-QQ-A5VD-01 1 116675881 116675881 C T MAB21L3 Silent p.F328F 0.32 TCGA-QQ-A5VD-01 1 118462869 118462869 G A GDAP2 Nonsense_Mutation p.Q38* 0.20 TCGA-QQ-A5VD-01 1 142713836 142713844 AATTTTCAT - RP11-417J8.6 RNA 0.14 TCGA-QQ-A5VD-01 1 147094275 147094275 G A BCL9 Missense_Mutation p.D1036N 0.12 deleterious(0) probably_damaging(0.971) TCGA-QQ-A5VD-01 1 152322054 152322054 G A FLG2 3'UTR 0.23 TCGA-QQ-A5VD-01 1 152323447 152323447 G A FLG2 Missense_Mutation p.S2272L 0.19 benign(0.118) TCGA-QQ-A5VD-01 1 153042956 153042956 C T SPRR2B 3'UTR 0.24 TCGA-QQ-A5VD-01 1 153509840 153509840 C T S100A5 Missense_Mutation p.E71K 0.14 deleterious(0) probably_damaging(0.987) TCGA-QQ-A5VD-01 1 153509841 153509841 C T S100A5 Silent p.K70K 0.14 TCGA-QQ-A5VD-01 1 154042818 154042818 G A NUP210L Missense_Mutation p.H829Y 0.29 tolerated(0.79) benign(0.003) TCGA-QQ-A5VD-01 1 154042843 154042843 C G NUP210L Missense_Mutation p.W820C 0.30 deleterious(0.02) possibly_damaging(0.473) TCGA-QQ-A5VD-01 1 154042844 154042844 C T NUP210L Nonsense_Mutation p.W820* 0.30 TCGA-QQ-A5VD-01 1 154569412 154569412 G A ADAR Silent p.V713V 0.13 TCGA-QQ-A5VD-01 1 156642717 156642717 C T NES Silent p.R421R 0.17 TCGA-QQ-A5VD-01 1 159163736 159163736 C T CADM3 Silent p.T233T 0.24 TCGA-QQ-A5VD-01 1 165551316 165551316 C T RP11-280O1.2 RNA 0.15 TCGA-QQ-A5VD-01 1 166039298 166039298 C T FAM78B 3'UTR 0.22 TCGA-QQ-A5VD-01 1 166594046 166594046 G A FMO9P RNA 0.19 TCGA-QQ-A5VD-01 1 177001985 177001985 C T ASTN1 Missense_Mutation p.G158S 0.17 deleterious_low_confidence(0.01) probably_damaging(0.919) TCGA-QQ-A5VD-01 1 177001986 177001986 C T ASTN1 Splice_Site p.X158_splice 0.13 TCGA-QQ-A5VD-01 1 179078352 179078352 C T ABL2 Missense_Mutation p.E684K 0.19 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-QQ-A5VD-01 1 179478469 179478469 C T AXDND1 Silent p.L809L 0.17 TCGA-QQ-A5VD-01 1 181686364 181686364 G A CACNA1E Missense_Mutation p.S484N 0.18 deleterious(0.01) benign(0.213) TCGA-QQ-A5VD-01 1 181701549 181701549 C T CACNA1E Missense_Mutation p.S776F 0.21 deleterious(0) possibly_damaging(0.485) TCGA-QQ-A5VD-01 1 181701550 181701550 C T CACNA1E Silent p.S776S 0.21 TCGA-QQ-A5VD-01 1 183914594 183914594 A C COLGALT2 Missense_Mutation p.F414C 0.22 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 1 186106679 186106679 C T HMCN1 Silent p.T4544T 0.16 TCGA-QQ-A5VD-01 1 186281401 186281401 G A PRG4 Silent p.T1296T 0.21 TCGA-QQ-A5VD-01 1 200378098 200378098 C T ZNF281 Missense_Mutation p.V246I 0.18 tolerated(0.3) benign(0.037) TCGA-QQ-A5VD-01 1 200378099 200378099 C T ZNF281 Silent p.L245L 0.17 TCGA-QQ-A5VD-01 1 202984051 202984051 C T TMEM183A Silent p.P134P 0.30 TCGA-QQ-A5VD-01 1 20416384 20416384 C T PLA2G5 Silent p.T96T 0.15 TCGA-QQ-A5VD-01 1 205271550 205271550 G A NUAK2 3'UTR 0.30 TCGA-QQ-A5VD-01 1 216373131 216373131 C T USH2A Missense_Mutation p.D1217N 0.17 benign(0) TCGA-QQ-A5VD-01 1 226049966 226049966 G A TMEM63A Missense_Mutation p.P346L 0.18 deleterious(0.02) possibly_damaging(0.807) TCGA-QQ-A5VD-01 1 226049967 226049967 G A TMEM63A Missense_Mutation p.P346S 0.18 tolerated(0.13) benign(0.082) TCGA-QQ-A5VD-01 1 227842879 227842879 C T ZNF678 Missense_Mutation p.R310C 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-QQ-A5VD-01 1 228362717 228362717 C T IBA57 Silent p.H222H 0.22 TCGA-QQ-A5VD-01 1 228362718 228362718 C T IBA57 Nonsense_Mutation p.R223* 0.22 TCGA-QQ-A5VD-01 1 228466451 228466451 T G OBSCN Silent p.G2736G 0.34 TCGA-QQ-A5VD-01 1 235929492 235929492 G A LYST Missense_Mutation p.P2003L 0.09 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 1 235929493 235929493 G A LYST Missense_Mutation p.P2003S 0.09 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 1 237754098 237754098 C T RYR2 Silent p.L1322L 0.29 TCGA-QQ-A5VD-01 1 237754099 237754099 C T RYR2 Missense_Mutation p.P1323S 0.29 benign(0.115) TCGA-QQ-A5VD-01 1 248343813 248343813 C T OR2M2 Missense_Mutation p.H176Y 0.22 deleterious(0.01) probably_damaging(0.974) TCGA-QQ-A5VD-01 1 3397100 3397100 G A ARHGEF16 Silent p.V693V 0.18 TCGA-QQ-A5VD-01 1 3397101 3397101 G A ARHGEF16 Missense_Mutation p.E694K 0.18 deleterious(0) probably_damaging(0.967) TCGA-QQ-A5VD-01 1 34090122 34090122 G A CSMD2 Silent p.I1834I 0.22 TCGA-QQ-A5VD-01 1 34663479 34663479 A G C1orf94 Missense_Mutation p.K325R 0.10 deleterious(0.01) benign(0.046) TCGA-QQ-A5VD-01 1 35857875 35857875 C T ZMYM4 Missense_Mutation p.P884S 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-QQ-A5VD-01 1 38274981 38274981 G T C1orf122 3'UTR 0.28 TCGA-QQ-A5VD-01 1 45407283 45407283 C T EIF2B3 Missense_Mutation p.V117I 0.15 tolerated(0.47) benign(0.02) TCGA-QQ-A5VD-01 1 57285087 57285087 C T C1orf168 5'Flank 0.35 TCGA-QQ-A5VD-01 1 64104443 64104443 C T PGM1 Silent p.S390S 0.38 TCGA-QQ-A5VD-01 1 6533333 6533333 G A PLEKHG5 Missense_Mutation p.P337L 0.50 tolerated(0.17) benign(0.006) TCGA-QQ-A5VD-01 1 66723501 66723501 G A PDE4B Missense_Mutation p.R180K 0.23 deleterious(0) possibly_damaging(0.566) TCGA-QQ-A5VD-01 1 67243406 67243406 T A TCTEX1D1 3'UTR 0.20 TCGA-QQ-A5VD-01 1 75038368 75038368 G A C1orf173 Missense_Mutation p.S1009L 0.21 tolerated(0.86) benign(0.007) TCGA-QQ-A5VD-01 1 76007151 76007151 C T SLC44A5 5'UTR 0.20 TCGA-QQ-A5VD-01 1 77779527 77779527 C T AK5 Intron 0.24 TCGA-QQ-A5VD-01 1 7886594 7886594 C T PER3 Missense_Mutation p.P663L 0.19 tolerated(0.16) benign(0.028) TCGA-QQ-A5VD-01 1 92479971 92479971 C T BRDT 3'UTR 0.14 TCGA-QQ-A5VD-01 1 92554330 92554330 C G BTBD8 Silent p.V75V 0.16 TCGA-QQ-A5VD-01 1 92554331 92554331 C T BTBD8 Missense_Mutation p.L76F 0.16 deleterious(0.01) possibly_damaging(0.489) TCGA-QQ-A5VD-01 1 94463579 94463579 G A ABCA4 Silent p.F2189F 0.32 TCGA-QQ-A5VD-01 1 99157162 99157162 G A SNX7 Silent p.R182R 0.20 TCGA-QQ-A5VD-01 1 99774347 99774347 C T LPPR4 3'UTR 0.26 TCGA-QQ-A5VD-01 20 1600523 1600523 C T SIRPB1 Missense_Mutation p.R23K 0.22 tolerated(0.3) benign(0.008) TCGA-QQ-A5VD-01 20 16360537 16360537 G A KIF16B Missense_Mutation p.R704C 0.12 tolerated(0.07) benign(0.045) TCGA-QQ-A5VD-01 20 23548949 23548949 G A CST9L Missense_Mutation p.L47F 0.28 tolerated(1) benign(0.085) TCGA-QQ-A5VD-01 20 24952105 24952105 G A APMAP Missense_Mutation p.P177S 0.09 tolerated(0.1) benign(0.122) TCGA-QQ-A5VD-01 20 31787179 31787179 C G BPIFA4P RNA 0.22 TCGA-QQ-A5VD-01 20 34214297 34214297 G T CPNE1 Silent p.R499R 0.26 TCGA-QQ-A5VD-01 20 34817717 34817717 T C EPB41L1 3'UTR 0.21 TCGA-QQ-A5VD-01 20 35281635 35281635 G A NDRG3 3'UTR 0.28 TCGA-QQ-A5VD-01 20 3781927 3781927 A G CDC25B Silent p.E244E 0.24 TCGA-QQ-A5VD-01 20 3781928 3781928 G A CDC25B Missense_Mutation p.V245M 0.24 tolerated(0.32) benign(0.061) TCGA-QQ-A5VD-01 20 43057040 43057040 G A HNF4A Missense_Mutation p.G399R 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.721) TCGA-QQ-A5VD-01 20 44979027 44979027 G A SLC35C2 3'UTR 0.29 TCGA-QQ-A5VD-01 20 57430110 57430110 A G GNAS Missense_Mutation p.N597S 0.15 tolerated_low_confidence(0.34) benign(0.018) TCGA-QQ-A5VD-01 20 5843685 5843686 AT - C20orf196 Frame_Shift_Del p.I66Rfs*4 0.23 TCGA-QQ-A5VD-01 20 61467646 61467646 C T COL9A3 Silent p.V503V 0.31 TCGA-QQ-A5VD-01 20 61467647 61467647 C T COL9A3 Missense_Mutation p.P504S 0.31 tolerated(0.11) possibly_damaging(0.681) TCGA-QQ-A5VD-01 20 8708034 8708034 T A PLCB1 Missense_Mutation p.F586Y 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-QQ-A5VD-01 21 15326422 15326422 C T ANKRD20A11P RNA 0.10 TCGA-QQ-A5VD-01 21 30248727 30248727 G A N6AMT1 Missense_Mutation p.L209F 0.14 possibly_damaging(0.635) TCGA-QQ-A5VD-01 21 30248728 30248728 G A N6AMT1 Silent p.V208V 0.14 TCGA-QQ-A5VD-01 21 31588247 31588247 C T CLDN8 5'UTR 0.22 TCGA-QQ-A5VD-01 21 31588248 31588248 C T CLDN8 5'UTR 0.22 TCGA-QQ-A5VD-01 21 31654816 31654816 G A KRTAP24-1 Silent p.L145L 0.12 TCGA-QQ-A5VD-01 21 34131506 34131506 G A PAXBP1 Missense_Mutation p.S423F 0.22 deleterious(0) possibly_damaging(0.825) TCGA-QQ-A5VD-01 21 40194769 40194769 G A ETS2 Missense_Mutation p.E456K 0.15 deleterious(0) probably_damaging(0.983) TCGA-QQ-A5VD-01 21 40552220 40552220 G A PSMG1 Silent p.S128S 0.28 TCGA-QQ-A5VD-01 21 40552221 40552221 G A PSMG1 Missense_Mutation p.S128F 0.26 deleterious(0) possibly_damaging(0.782) TCGA-QQ-A5VD-01 22 37480403 37480403 G A TMPRSS6 Silent p.A385A 0.22 TCGA-QQ-A5VD-01 22 39795804 39795804 C T TAB1 5'UTR 0.21 TCGA-QQ-A5VD-01 22 40417726 40417726 C T FAM83F Silent p.V404V 0.23 TCGA-QQ-A5VD-01 22 40669531 40669531 C T TNRC6B Missense_Mutation p.T1023I 0.12 deleterious(0) probably_damaging(0.944) TCGA-QQ-A5VD-01 22 46345806 46345806 G A WNT7B Nonsense_Mutation p.R98* 0.28 TCGA-QQ-A5VD-01 22 46345807 46345807 G A WNT7B Silent p.L97L 0.28 TCGA-QQ-A5VD-01 22 46653057 46653057 C T PKDREJ Missense_Mutation p.G2055S 0.14 deleterious(0.03) probably_damaging(0.979) TCGA-QQ-A5VD-01 22 46653058 46653058 C T PKDREJ Silent p.L2054L 0.14 TCGA-QQ-A5VD-01 22 50297506 50297506 T G ALG12 Silent p.R483R 0.22 TCGA-QQ-A5VD-01 22 50297507 50297507 C T ALG12 Silent p.E482E 0.20 TCGA-QQ-A5VD-01 22 51049259 51049259 G A MAPK8IP2 3'UTR 0.29 TCGA-QQ-A5VD-01 2 100209981 100209981 G A AFF3 Silent p.N739N 0.27 TCGA-QQ-A5VD-01 2 110917745 110917745 G A NPHP1 Missense_Mutation p.L404F 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-QQ-A5VD-01 2 113820212 113820212 G A IL36RN Nonsense_Mutation p.W142* 0.24 TCGA-QQ-A5VD-01 2 114398551 114398551 C T RABL2A Silent p.I126I 0.28 TCGA-QQ-A5VD-01 2 114398552 114398552 C T RABL2A Missense_Mutation p.P127S 0.28 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VD-01 2 120223381 120223381 T G SCTR Missense_Mutation p.I163L 0.11 deleterious(0.05) benign(0.058) TCGA-QQ-A5VD-01 2 125405445 125405445 G A CNTNAP5 Missense_Mutation p.E662K 0.12 deleterious(0.02) benign(0.371) TCGA-QQ-A5VD-01 2 132291191 132291191 G A CCDC74A 3'UTR 0.17 TCGA-QQ-A5VD-01 2 132291192 132291192 G A CCDC74A 3'UTR 0.17 TCGA-QQ-A5VD-01 2 135705305 135705305 G C CCNT2 Splice_Site p.X180_splice 0.13 TCGA-QQ-A5VD-01 2 138414659 138414659 G A THSD7B Nonsense_Mutation p.W1438* 0.19 TCGA-QQ-A5VD-01 2 142238083 142238083 G A LRP1B Silent p.I75I 0.10 TCGA-QQ-A5VD-01 2 155252642 155252642 G A GALNT13 Silent p.E432E 0.18 TCGA-QQ-A5VD-01 2 155252643 155252643 G A GALNT13 Splice_Site p.X432_splice 0.17 TCGA-QQ-A5VD-01 2 160006971 160006971 A C TANC1 Missense_Mutation p.N196H 0.08 tolerated(0.06) probably_damaging(0.95) TCGA-QQ-A5VD-01 2 165365038 165365038 C T GRB14 Missense_Mutation p.R317Q 0.21 tolerated(0.14) benign(0.121) TCGA-QQ-A5VD-01 2 172952883 172952883 C T DLX1 Silent p.S222S 0.17 TCGA-QQ-A5VD-01 2 179260225 179260225 C T OSBPL6 Missense_Mutation p.T940I 0.14 deleterious(0.01) possibly_damaging(0.897) TCGA-QQ-A5VD-01 2 179260226 179260226 C T OSBPL6 Silent p.T940T 0.14 TCGA-QQ-A5VD-01 2 179636198 179636198 C T TTN Missense_Mutation p.G2619D 0.20 TCGA-QQ-A5VD-01 2 179636199 179636199 C T TTN Splice_Site p.X2619_splice 0.20 TCGA-QQ-A5VD-01 2 179650837 179650837 G T TTN Missense_Mutation p.A703E 0.19 TCGA-QQ-A5VD-01 2 179655564 179655564 C T TTN Silent p.Q557Q 0.11 TCGA-QQ-A5VD-01 2 180307985 180307985 G A ZNF385B Missense_Mutation p.P470S 0.16 deleterious(0) probably_damaging(0.996) TCGA-QQ-A5VD-01 2 183582840 183582840 C T DNAJC10 Silent p.D9D 0.23 TCGA-QQ-A5VD-01 2 183616418 183616418 C T DNAJC10 Missense_Mutation p.A447V 0.12 tolerated(0.12) benign(0.405) TCGA-QQ-A5VD-01 2 183616419 183616419 C T DNAJC10 Silent p.A447A 0.11 TCGA-QQ-A5VD-01 2 187368861 187368861 C T ZC3H15 Missense_Mutation p.P213S 0.17 deleterious(0) benign(0.285) TCGA-QQ-A5VD-01 2 187368862 187368862 C T ZC3H15 Missense_Mutation p.P213L 0.17 deleterious(0) possibly_damaging(0.703) TCGA-QQ-A5VD-01 2 190720629 190720629 C T PMS1 Intron 0.17 TCGA-QQ-A5VD-01 2 198949937 198949937 C T PLCL1 Nonsense_Mutation p.R566* 0.23 TCGA-QQ-A5VD-01 2 200246469 200246469 C T SATB2 Missense_Mutation p.D141N 0.12 deleterious(0.05) probably_damaging(0.98) TCGA-QQ-A5VD-01 2 201645537 201645537 G A AC007163.6 Intron 0.22 TCGA-QQ-A5VD-01 2 210557733 210557733 T A MAP2 Nonsense_Mutation p.L280* 0.26 TCGA-QQ-A5VD-01 2 233399031 233399031 G A CHRND Silent p.R450R 0.09 TCGA-QQ-A5VD-01 2 233399032 233399032 G A CHRND Missense_Mutation p.D451N 0.09 tolerated(0.15) benign(0.097) TCGA-QQ-A5VD-01 2 238303535 238303535 C T COL6A3 Missense_Mutation p.G135E 0.35 probably_damaging(1) TCGA-QQ-A5VD-01 2 238303536 238303536 C T COL6A3 Missense_Mutation p.G135R 0.35 probably_damaging(1) TCGA-QQ-A5VD-01 2 239054442 239054442 G A KLHL30 Silent p.A373A 0.22 TCGA-QQ-A5VD-01 2 239054443 239054443 G A KLHL30 Missense_Mutation p.A374T 0.19 tolerated(0.33) benign(0.078) TCGA-QQ-A5VD-01 2 27682296 27682296 G A IFT172 Silent p.S912S 0.17 TCGA-QQ-A5VD-01 2 27682297 27682297 G A IFT172 Missense_Mutation p.S912F 0.17 deleterious(0.04) benign(0.163) TCGA-QQ-A5VD-01 2 31484465 31484465 C A EHD3 Missense_Mutation p.F322L 0.19 deleterious(0.03) benign(0.104) TCGA-QQ-A5VD-01 2 39996116 39996116 G A THUMPD2 Intron 0.20 TCGA-QQ-A5VD-01 2 54482043 54482043 C T TSPYL6 3'UTR 0.21 TCGA-QQ-A5VD-01 2 54482044 54482044 C T TSPYL6 3'UTR 0.21 TCGA-QQ-A5VD-01 2 56094300 56094300 C T EFEMP1 Missense_Mutation p.D464N 0.19 deleterious(0) possibly_damaging(0.579) TCGA-QQ-A5VD-01 2 71360032 71360032 C T MPHOSPH10 Nonsense_Mutation p.Q32* 0.17 TCGA-QQ-A5VD-01 2 7183902 7183902 G A RNF144A 3'UTR 0.20 TCGA-QQ-A5VD-01 2 7183903 7183903 G A RNF144A 3'UTR 0.20 TCGA-QQ-A5VD-01 2 74480151 74480151 G A SLC4A5 Silent p.D406D 0.23 TCGA-QQ-A5VD-01 2 74752172 74752172 G A DQX1 Missense_Mutation p.P132L 0.11 deleterious(0.02) benign(0.093) TCGA-QQ-A5VD-01 2 74776523 74776523 T G LOXL3 Missense_Mutation p.E222A 0.13 tolerated(0.3) benign(0.243) TCGA-QQ-A5VD-01 3 101083777 101083777 C G SENP7 Missense_Mutation p.K459N 0.31 tolerated(0.25) benign(0.029) TCGA-QQ-A5VD-01 3 108634967 108634967 C T GUCA1C Intron 0.21 TCGA-QQ-A5VD-01 3 108634968 108634968 C T GUCA1C Intron 0.21 TCGA-QQ-A5VD-01 3 111637922 111637922 C T PHLDB2 Missense_Mutation p.P575S 0.21 tolerated(0.1) benign(0.022) TCGA-QQ-A5VD-01 3 111637923 111637923 C T PHLDB2 Missense_Mutation p.P575L 0.22 tolerated(0.1) benign(0.013) TCGA-QQ-A5VD-01 3 112256658 112256658 G C ATG3 Missense_Mutation p.T197S 0.18 deleterious(0) probably_damaging(0.963) TCGA-QQ-A5VD-01 3 113755593 113755593 G A KIAA1407 Silent p.T152T 0.20 TCGA-QQ-A5VD-01 3 118905609 118905609 T A UPK1B Silent p.T7T 0.23 TCGA-QQ-A5VD-01 3 119531705 119531705 G A NR1I2 Missense_Mutation p.S270N 0.29 tolerated(0.38) benign(0) TCGA-QQ-A5VD-01 3 16216865 16216865 G A GALNT15 Silent p.L69L 0.10 TCGA-QQ-A5VD-01 3 167000220 167000220 G A ZBBX Missense_Mutation p.S687F 0.23 tolerated(0.08) benign(0.128) TCGA-QQ-A5VD-01 3 180325668 180325668 C T TTC14 Intron 0.24 TCGA-QQ-A5VD-01 3 184102322 184102322 C T CHRD Intron 0.17 TCGA-QQ-A5VD-01 3 186502839 186502839 C T EIF4A2 Silent p.F99F 0.21 TCGA-QQ-A5VD-01 3 197444872 197444872 G A KIAA0226 Silent p.L65L 0.22 TCGA-QQ-A5VD-01 3 21706429 21706429 G A ZNF385D Silent p.P38P 0.24 TCGA-QQ-A5VD-01 3 30713642 30713642 C T TGFBR2 Silent p.L348L 0.15 TCGA-QQ-A5VD-01 3 35779763 35779763 C T ARPP21 Missense_Mutation p.P534S 0.12 deleterious(0.01) benign(0.038) TCGA-QQ-A5VD-01 3 419527 419527 C T CHL1 Missense_Mutation p.T593I 0.30 tolerated(0.43) possibly_damaging(0.676) TCGA-QQ-A5VD-01 3 44487967 44487967 G A ZNF445 3'UTR 0.22 TCGA-QQ-A5VD-01 3 4452606 4452606 C T SUMF1 Nonsense_Mutation p.W299* 0.12 TCGA-QQ-A5VD-01 3 4452607 4452607 C T SUMF1 Nonsense_Mutation p.W299* 0.12 TCGA-QQ-A5VD-01 3 45943138 45943138 C T CCR9 Silent p.I286I 0.22 TCGA-QQ-A5VD-01 3 48608115 48608115 C T COL7A1 Missense_Mutation p.G2434E 0.07 probably_damaging(1) TCGA-QQ-A5VD-01 3 48608116 48608116 C T COL7A1 Missense_Mutation p.G2434R 0.07 probably_damaging(1) TCGA-QQ-A5VD-01 3 48626426 48626426 G C COL7A1 Missense_Mutation p.P773A 0.21 unknown(0) TCGA-QQ-A5VD-01 3 48626427 48626427 G A COL7A1 Silent p.A772A 0.21 TCGA-QQ-A5VD-01 3 50152992 50152992 G A RBM5 Silent p.P657P 0.17 TCGA-QQ-A5VD-01 3 7188273 7188273 G A GRM7 Nonsense_Mutation p.W218* 0.19 TCGA-QQ-A5VD-01 4 104006543 104006543 G A BDH2 Silent p.F165F 0.38 TCGA-QQ-A5VD-01 4 104510769 104510769 A C TACR3 3'UTR 0.12 TCGA-QQ-A5VD-01 4 109753543 109753543 C T COL25A1 Missense_Mutation p.G568E 0.17 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 4 113460790 113460790 G A C4orf21 Silent p.L2076L 0.18 TCGA-QQ-A5VD-01 4 114275648 114275648 G A ANK2 Silent p.E1958E 0.20 TCGA-QQ-A5VD-01 4 119459025 119459025 A C CEP170P1 RNA 0.22 TCGA-QQ-A5VD-01 4 126241960 126241960 G A FAT4 Missense_Mutation p.R1465K 0.29 possibly_damaging(0.867) TCGA-QQ-A5VD-01 4 154624495 154624495 T G TLR2 Missense_Mutation p.S146A 0.33 tolerated(0.19) benign(0.352) TCGA-QQ-A5VD-01 4 170359399 170359399 C T NEK1 Missense_Mutation p.E867K 0.22 tolerated(0.12) benign(0.013) TCGA-QQ-A5VD-01 4 184019229 184019229 C T WWC2 5'Flank 0.13 TCGA-QQ-A5VD-01 4 184019230 184019230 C T WWC2 5'Flank 0.13 TCGA-QQ-A5VD-01 4 185599481 185599481 C T PRIMPOL Missense_Mutation p.P314S 0.26 probably_damaging(0.965) TCGA-QQ-A5VD-01 4 187003983 187003983 G A TLR3 Silent p.L381L 0.18 TCGA-QQ-A5VD-01 4 187207625 187207625 G A F11 Missense_Mutation p.D513N 0.21 tolerated(0.99) benign(0.018) TCGA-QQ-A5VD-01 4 36126536 36126536 G A ARAP2 Missense_Mutation p.L1232F 0.17 deleterious(0.01) possibly_damaging(0.896) TCGA-QQ-A5VD-01 4 36214909 36214909 G A ARAP2 Missense_Mutation p.P333S 0.11 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 4 38995384 38995384 G A TMEM156 Missense_Mutation p.S198F 0.14 tolerated(0.06) benign(0.258) TCGA-QQ-A5VD-01 4 44176269 44176269 C T KCTD8 3'UTR 0.17 TCGA-QQ-A5VD-01 4 5448438 5448438 G A STK32B Missense_Mutation p.G201R 0.19 deleterious(0) possibly_damaging(0.87) TCGA-QQ-A5VD-01 4 54876115 54876115 G T CHIC2 3'UTR 0.24 TCGA-QQ-A5VD-01 4 69978511 69978511 C T UGT2B7 3'UTR 0.13 TCGA-QQ-A5VD-01 4 71472958 71472958 G A AMBN 3'UTR 0.16 TCGA-QQ-A5VD-01 4 79366786 79366786 C T FRAS1 Missense_Mutation p.P1926S 0.21 possibly_damaging(0.87) TCGA-QQ-A5VD-01 4 79366787 79366787 C T FRAS1 Missense_Mutation p.P1926L 0.21 possibly_damaging(0.798) TCGA-QQ-A5VD-01 4 90874525 90874525 C T MMRN1 Missense_Mutation p.P1215S 0.14 deleterious(0.01) probably_damaging(1) TCGA-QQ-A5VD-01 4 95162090 95162090 C T SMARCAD1 Missense_Mutation p.S213F 0.14 deleterious(0.04) possibly_damaging(0.862) TCGA-QQ-A5VD-01 5 111643171 111643171 G A EPB41L4A Missense_Mutation p.S39F 0.21 deleterious(0) benign(0.114) TCGA-QQ-A5VD-01 5 112769637 112769637 G A TSSK1B Silent p.P300P 0.35 TCGA-QQ-A5VD-01 5 127627260 127627260 G A FBN2 Missense_Mutation p.P2085S 0.22 tolerated(0.13) possibly_damaging(0.904) TCGA-QQ-A5VD-01 5 131007961 131007961 C T FNIP1 Missense_Mutation p.G726R 0.18 deleterious(0.02) probably_damaging(0.945) TCGA-QQ-A5VD-01 5 133482697 133482697 G A TCF7 3'UTR 0.35 TCGA-QQ-A5VD-01 5 138268381 138268381 G A CTNNA1 Missense_Mutation p.G805R 0.27 deleterious(0.03) possibly_damaging(0.802) TCGA-QQ-A5VD-01 5 138268382 138268382 G A CTNNA1 Missense_Mutation p.G805E 0.28 deleterious(0.02) possibly_damaging(0.596) TCGA-QQ-A5VD-01 5 140230348 140230348 G A PCDHA9 Silent p.Q756Q 0.16 TCGA-QQ-A5VD-01 5 140537821 140537821 A C PCDHB17 3'UTR 0.07 TCGA-QQ-A5VD-01 5 140750935 140750935 G A PCDHGB3 Missense_Mutation p.G325E 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-QQ-A5VD-01 5 140855792 140855792 A T PCDHGC3 Missense_Mutation p.I37F 0.22 deleterious(0.04) possibly_damaging(0.724) TCGA-QQ-A5VD-01 5 140855793 140855793 T C PCDHGC3 Missense_Mutation p.I37T 0.22 deleterious(0.01) benign(0.065) TCGA-QQ-A5VD-01 5 150887105 150887105 C T FAT2 Missense_Mutation p.D4043N 0.18 benign(0.014) TCGA-QQ-A5VD-01 5 150887106 150887106 C T FAT2 Silent p.G4042G 0.19 TCGA-QQ-A5VD-01 5 150931138 150931138 C T FAT2 Missense_Mutation p.E1396K 0.17 possibly_damaging(0.734) TCGA-QQ-A5VD-01 5 162045 162045 G A PLEKHG4B Missense_Mutation p.E523K 0.33 tolerated(0.1) benign(0.003) TCGA-QQ-A5VD-01 5 162046 162046 A C PLEKHG4B Missense_Mutation p.E523A 0.32 tolerated(0.06) benign(0.03) TCGA-QQ-A5VD-01 5 169494579 169494579 G A DOCK2 Missense_Mutation p.M1511I 0.10 tolerated(0.05) benign(0.046) TCGA-QQ-A5VD-01 5 178391919 178391919 C T ZNF454 Nonsense_Mutation p.Q172* 0.10 TCGA-QQ-A5VD-01 5 24537506 24537506 G A CDH10 Missense_Mutation p.P170L 0.22 deleterious(0) probably_damaging(0.996) TCGA-QQ-A5VD-01 5 35753864 35753864 G A SPEF2 Splice_Site p.X1156_splice 0.25 TCGA-QQ-A5VD-01 5 39341679 39341679 T C C9 Missense_Mutation p.N103D 0.20 tolerated(0.18) benign(0.049) TCGA-QQ-A5VD-01 5 49701670 49701670 C T EMB Silent p.G163G 0.17 TCGA-QQ-A5VD-01 5 50137955 50137955 G A PARP8 3'UTR 0.07 TCGA-QQ-A5VD-01 5 58147091 58147091 G A RAB3C Silent p.L199L 0.09 TCGA-QQ-A5VD-01 5 60198336 60198336 C T ERCC8 Splice_Site p.X184_splice 0.17 TCGA-QQ-A5VD-01 5 77781613 77781613 G A LHFPL2 3'UTR 0.12 TCGA-QQ-A5VD-01 5 80064660 80064660 G A MSH3 Silent p.G697G 0.23 TCGA-QQ-A5VD-01 5 89988518 89988518 G A GPR98 Missense_Mutation p.G2350S 0.14 probably_damaging(0.986) TCGA-QQ-A5VD-01 5 94224612 94224612 C T MCTP1 Silent p.A635A 0.12 TCGA-QQ-A5VD-01 5 95728839 95728839 G A PCSK1 Missense_Mutation p.P710S 0.18 tolerated_low_confidence(0.36) benign(0.039) TCGA-QQ-A5VD-01 6 109837058 109837058 A C AK9 Splice_Site p.X1355_splice 0.30 TCGA-QQ-A5VD-01 6 12161889 12161889 C T HIVEP1 Silent p.T2235T 0.50 TCGA-QQ-A5VD-01 6 122996223 122996223 G A PKIB Intron 0.16 TCGA-QQ-A5VD-01 6 126081834 126081834 G A HEY2 3'UTR 0.33 TCGA-QQ-A5VD-01 6 132619016 132619016 C T MOXD1 Nonsense_Mutation p.W529* 0.15 TCGA-QQ-A5VD-01 6 132891919 132891919 C T TAAR6 Silent p.I153I 0.12 TCGA-QQ-A5VD-01 6 136513331 136513331 C T PDE7B 3'UTR 0.14 TCGA-QQ-A5VD-01 6 136513332 136513332 C T PDE7B 3'UTR 0.14 TCGA-QQ-A5VD-01 6 138727221 138727221 G A HEBP2 Missense_Mutation p.D118N 0.15 tolerated(0.46) benign(0.048) TCGA-QQ-A5VD-01 6 143094200 143094200 G A HIVEP2 Missense_Mutation p.S559F 0.16 deleterious(0.01) possibly_damaging(0.62) TCGA-QQ-A5VD-01 6 144178505 144178505 C T LTV1 Missense_Mutation p.P155S 0.15 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 6 144178506 144178506 C T LTV1 Missense_Mutation p.P155L 0.15 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VD-01 6 147124792 147124792 C T ADGB Intron 0.12 TCGA-QQ-A5VD-01 6 147136210 147136210 G A ADGB Missense_Mutation p.E1621K 0.13 deleterious(0) possibly_damaging(0.906) TCGA-QQ-A5VD-01 6 149771740 149771740 C T ZC3H12D 3'Flank 0.26 TCGA-QQ-A5VD-01 6 158093863 158093863 C T ZDHHC14 Silent p.P392P 0.18 TCGA-QQ-A5VD-01 6 170118904 170118904 G A PHF10 Missense_Mutation p.S102F 0.31 deleterious(0) probably_damaging(0.935) TCGA-QQ-A5VD-01 6 29395205 29395205 C T OR11A1 Missense_Mutation p.D72N 0.33 deleterious(0) benign(0.258) TCGA-QQ-A5VD-01 6 29691132 29691132 G A HLA-F 5'Flank 0.19 TCGA-QQ-A5VD-01 6 29691133 29691133 G A HLA-F 5'Flank 0.20 TCGA-QQ-A5VD-01 6 3089836 3089836 C T RIPK1 Missense_Mutation p.P287L 0.20 deleterious(0) probably_damaging(0.98) TCGA-QQ-A5VD-01 6 31557819 31557819 G T NCR3 Missense_Mutation p.A43D 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-QQ-A5VD-01 6 32975875 32975875 C T HLA-DOA Silent p.P82P 0.33 TCGA-QQ-A5VD-01 6 33130539 33130539 C T COL11A2 3'UTR 0.32 TCGA-QQ-A5VD-01 6 33630708 33630708 C T ITPR3 Silent p.C293C 0.36 TCGA-QQ-A5VD-01 6 33630709 33630709 C T ITPR3 Missense_Mutation p.R294C 0.33 deleterious(0) probably_damaging(0.998) TCGA-QQ-A5VD-01 6 46659235 46659235 T G TDRD6 Missense_Mutation p.L1124V 0.22 deleterious(0.02) benign(0.126) TCGA-QQ-A5VD-01 6 46830777 46830777 T C GPR116 Missense_Mutation p.I683V 0.12 tolerated(0.08) benign(0.027) TCGA-QQ-A5VD-01 6 70950397 70950397 C T COL9A1 Missense_Mutation p.E692K 0.20 possibly_damaging(0.803) TCGA-QQ-A5VD-01 6 74210505 74210505 C T MTO1 3'UTR 0.20 TCGA-QQ-A5VD-01 6 90576756 90576756 C T CASP8AP2 RNA 0.44 TCGA-QQ-A5VD-01 6 96659132 96659132 G A FUT9 3'UTR 0.20 TCGA-QQ-A5VD-01 6 97002344 97002344 C T UFL1 3'UTR 0.36 TCGA-QQ-A5VD-01 6 97247514 97247514 G C GPR63 Missense_Mutation p.P32A 0.29 tolerated_low_confidence(0.8) benign(0) TCGA-QQ-A5VD-01 6 97247515 97247515 G A GPR63 Silent p.L31L 0.28 TCGA-QQ-A5VD-01 7 100224890 100224890 G A TFR2 Silent p.L664L 0.19 TCGA-QQ-A5VD-01 7 100676336 100676336 G A MUC17 Missense_Mutation p.E547K 0.15 possibly_damaging(0.52) TCGA-QQ-A5VD-01 7 104714102 104714102 C T KMT2E Silent p.R178R 0.25 TCGA-QQ-A5VD-01 7 104714103 104714103 C A KMT2E Silent p.R179R 0.25 TCGA-QQ-A5VD-01 7 107626666 107626666 A T LAMB1 Missense_Mutation p.I189N 0.34 deleterious(0) probably_damaging(0.981) TCGA-QQ-A5VD-01 7 111640577 111640577 C T DOCK4 Missense_Mutation p.G45E 0.05 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 7 117351350 117351350 C G CTTNBP2 3'UTR 0.16 TCGA-QQ-A5VD-01 7 121668615 121668615 C T PTPRZ1 Silent p.F1666F 0.21 TCGA-QQ-A5VD-01 7 121668616 121668616 C T PTPRZ1 Nonsense_Mutation p.Q1667* 0.21 TCGA-QQ-A5VD-01 7 121943276 121943276 G A FEZF1 Silent p.F297F 0.15 TCGA-QQ-A5VD-01 7 127255454 127255454 C T PAX4 Splice_Site p.X40_splice 0.27 TCGA-QQ-A5VD-01 7 131814817 131814817 G A PLXNA4 3'UTR 0.21 TCGA-QQ-A5VD-01 7 131814818 131814818 G A PLXNA4 3'UTR 0.22 TCGA-QQ-A5VD-01 7 140273686 140273686 G A DENND2A Silent p.S456S 0.21 TCGA-QQ-A5VD-01 7 140273687 140273687 G A DENND2A Missense_Mutation p.S456F 0.22 deleterious(0) probably_damaging(0.996) TCGA-QQ-A5VD-01 7 142428885 142428885 G A TRBV28 Missense_Mutation p.G82E 0.19 tolerated(0.06) probably_damaging(1) TCGA-QQ-A5VD-01 7 142428886 142428886 G C TRBV28 Silent p.G82G 0.19 TCGA-QQ-A5VD-01 7 142919827 142919827 C T TAS2R40 Missense_Mutation p.S219F 0.22 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 7 149545519 149545519 C T ZNF862 Nonsense_Mutation p.Q313* 0.17 TCGA-QQ-A5VD-01 7 158486169 158486169 G A NCAPG2 Silent p.F33F 0.19 TCGA-QQ-A5VD-01 7 22259605 22259605 C T RAPGEF5 Silent p.G139G 0.23 TCGA-QQ-A5VD-01 7 36423537 36423537 C T KIAA0895 Missense_Mutation p.G37R 0.26 tolerated_low_confidence(0.77) benign(0.007) TCGA-QQ-A5VD-01 7 38725697 38725697 C A FAM183B 5'UTR 0.30 TCGA-QQ-A5VD-01 7 39747216 39747216 C T RALA 3'UTR 0.24 TCGA-QQ-A5VD-01 7 39747218 39747218 T G RALA 3'UTR 0.19 TCGA-QQ-A5VD-01 7 45104166 45104166 C T CCM2 Silent p.I152I 0.27 TCGA-QQ-A5VD-01 7 47317632 47317632 G A TNS3 3'UTR 0.09 TCGA-QQ-A5VD-01 7 76029884 76029884 C T SRCRB4D Missense_Mutation p.S65N 0.14 tolerated(0.47) possibly_damaging(0.649) TCGA-QQ-A5VD-01 7 81374338 81374338 G A HGF Missense_Mutation p.R242W 0.27 deleterious(0) probably_damaging(0.946) TCGA-QQ-A5VD-01 7 81374339 81374339 G A HGF Silent p.H241H 0.27 TCGA-QQ-A5VD-01 7 82764729 82764729 G A PCLO Missense_Mutation p.H713Y 0.15 unknown(0) TCGA-QQ-A5VD-01 7 87046812 87046812 G A ABCB4 Missense_Mutation p.A833V 0.18 deleterious(0.02) possibly_damaging(0.461) TCGA-QQ-A5VD-01 7 92734623 92734623 T G SAMD9 Missense_Mutation p.H263P 0.22 deleterious(0.01) possibly_damaging(0.878) TCGA-QQ-A5VD-01 7 99054666 99054666 G A CPSF4 3'UTR 0.14 TCGA-QQ-A5VD-01 8 11301819 11301819 G A FAM167A Silent p.T34T 0.05 TCGA-QQ-A5VD-01 8 11301820 11301820 G A FAM167A Missense_Mutation p.T34I 0.09 deleterious(0) probably_damaging(0.974) TCGA-QQ-A5VD-01 8 113267508 113267508 C T CSMD3 Nonsense_Mutation p.W3337* 0.25 TCGA-QQ-A5VD-01 8 113267509 113267509 C G CSMD3 Missense_Mutation p.W3337S 0.26 deleterious(0) benign(0.145) TCGA-QQ-A5VD-01 8 113694742 113694742 C T CSMD3 Missense_Mutation p.G869E 0.18 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 8 113694743 113694743 C T CSMD3 Missense_Mutation p.G869R 0.18 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 8 11400767 11400767 G A BLK Missense_Mutation p.E12K 0.17 tolerated_low_confidence(0.61) benign(0.292) TCGA-QQ-A5VD-01 8 125551344 125551344 C T TATDN1 5'Flank 0.24 TCGA-QQ-A5VD-01 8 13357080 13357080 A G DLC1 Silent p.A167A 0.23 TCGA-QQ-A5VD-01 8 134060111 134060111 C T SLA Missense_Mutation p.G146S 0.11 deleterious(0) probably_damaging(0.964) TCGA-QQ-A5VD-01 8 145616875 145616875 C T ADCK5 Silent p.V298V 0.19 TCGA-QQ-A5VD-01 8 145726915 145726915 G A PPP1R16A Missense_Mutation p.E406K 0.18 tolerated(0.58) benign(0.007) TCGA-QQ-A5VD-01 8 2820869 2820869 C T CSMD1 Missense_Mutation p.G3110E 0.21 probably_damaging(1) TCGA-QQ-A5VD-01 8 2830821 2830821 C T CSMD1 Missense_Mutation p.G2914E 0.17 probably_damaging(0.999) TCGA-QQ-A5VD-01 8 28595072 28595072 C G EXTL3 Missense_Mutation p.F771L 0.18 deleterious(0) probably_damaging(0.995) TCGA-QQ-A5VD-01 8 28906844 28906844 G A HMBOX1 Intron 0.26 TCGA-QQ-A5VD-01 8 327878 327878 C G FAM87A RNA 0.12 TCGA-QQ-A5VD-01 8 37732414 37732414 G C RAB11FIP1 Missense_Mutation p.P414R 0.29 deleterious(0) possibly_damaging(0.85) TCGA-QQ-A5VD-01 8 38279355 38279355 G A FGFR1 Silent p.I378I 0.22 TCGA-QQ-A5VD-01 8 39350715 39350715 G T ADAM3A RNA 0.22 TCGA-QQ-A5VD-01 8 93017458 93017458 T A RUNX1T1 Missense_Mutation p.Q220L 0.23 deleterious(0) possibly_damaging(0.9) TCGA-QQ-A5VD-01 9 103348640 103348640 C T MURC Silent p.I334I 0.19 TCGA-QQ-A5VD-01 9 103348641 103348641 C T MURC Missense_Mutation p.P335S 0.19 tolerated(0.43) benign(0.007) TCGA-QQ-A5VD-01 9 132381854 132381854 G A C9orf50 Silent p.L221L 0.15 TCGA-QQ-A5VD-01 9 133750394 133750394 G A ABL1 Missense_Mutation p.E428K 0.16 deleterious(0) probably_damaging(0.919) TCGA-QQ-A5VD-01 9 138831595 138831595 G A UBAC1 Missense_Mutation p.S296F 0.40 deleterious(0.01) possibly_damaging(0.866) TCGA-QQ-A5VD-01 9 139975182 139975182 C T UAP1L1 Missense_Mutation p.S407F 0.21 deleterious(0) probably_damaging(1) TCGA-QQ-A5VD-01 9 34255997 34255997 C T KIF24 Missense_Mutation p.G1203E 0.29 tolerated(0.1) benign(0.02) TCGA-QQ-A5VD-01 9 35813317 35813317 G A HINT2 Missense_Mutation p.L116F 0.22 tolerated(0.12) benign(0.275) TCGA-QQ-A5VD-01 9 35813318 35813318 G C HINT2 Silent p.L115L 0.23 TCGA-QQ-A5VD-01 9 36223481 36223481 A T GNE Missense_Mutation p.Y465N 0.17 deleterious_low_confidence(0.04) benign(0.004) TCGA-QQ-A5VD-01 9 37537587 37537587 G A FBXO10 Silent p.I313I 0.20 TCGA-QQ-A5VD-01 9 4118551 4118551 G A GLIS3 Silent p.S309S 0.12 TCGA-QQ-A5VD-01 9 4118552 4118552 G C GLIS3 Missense_Mutation p.S309C 0.16 deleterious(0) probably_damaging(0.997) TCGA-QQ-A5VD-01 9 84230928 84230928 G A TLE1 Missense_Mutation p.S296F 0.18 deleterious(0) possibly_damaging(0.465) TCGA-QQ-A5VD-01 9 894113 894113 C T DMRT1 Missense_Mutation p.P247L 0.14 deleterious(0.01) benign(0.028) TCGA-QQ-A5VD-01 X 100513529 100513529 C T DRP2 Silent p.L874L 0.50 TCGA-QQ-A5VD-01 X 100513530 100513530 C T DRP2 Silent p.L875L 0.50 TCGA-QQ-A5VD-01 X 106172603 106172603 T C CLDN2 3'UTR 0.35 TCGA-QQ-A5VD-01 X 108885429 108885429 C T ACSL4 3'UTR 0.10 TCGA-QQ-A5VD-01 X 109698717 109698717 C T RGAG1 3'UTR 0.32 TCGA-QQ-A5VD-01 X 129040157 129040157 T C UTP14A 5'Flank 0.17 TCGA-QQ-A5VD-01 X 129518774 129518774 C T GPR119 Silent p.R216R 0.50 TCGA-QQ-A5VD-01 X 137715093 137715093 C T FGF13 Missense_Mutation p.G229E 0.33 tolerated_low_confidence(0.24) benign(0.186) TCGA-QQ-A5VD-01 X 139866052 139866052 G A CDR1 Silent p.S160S 0.45 TCGA-QQ-A5VD-01 X 140336558 140336558 C T SPANXC Silent p.K11K 0.40 TCGA-QQ-A5VD-01 X 140994128 140994128 C T MAGEC1 Missense_Mutation p.S313F 0.37 tolerated_low_confidence(0.14) unknown(0) TCGA-QQ-A5VD-01 X 140995998 140995998 G A MAGEC1 Silent p.T936T 0.39 TCGA-QQ-A5VD-01 X 148035201 148035201 G A AFF2 Missense_Mutation p.D497N 0.25 deleterious(0.01) benign(0.017) TCGA-QQ-A5VD-01 X 150912383 150912383 C T CNGA2 Missense_Mutation p.L470F 0.14 deleterious(0) probably_damaging(0.999) TCGA-QQ-A5VD-01 X 27998918 27998918 C T DCAF8L1 Silent p.G178G 0.67 TCGA-QQ-A5VD-01 X 27998919 27998919 C T DCAF8L1 Missense_Mutation p.G178E 0.67 deleterious(0) probably_damaging(0.95) TCGA-QQ-A5VD-01 X 40450494 40450494 T C ATP6AP2 Silent p.S59S 0.36 TCGA-QQ-A5VD-01 X 48629402 48629402 G A GLOD5 Silent p.K87K 0.08 TCGA-QQ-A5VD-01 X 48771445 48771445 C T PIM2 Missense_Mutation p.G300E 0.56 tolerated_low_confidence(0.72) benign(0.024) TCGA-QQ-A5VD-01 X 48771446 48771446 C T PIM2 Missense_Mutation p.G300R 0.57 tolerated_low_confidence(0.56) benign(0.001) TCGA-QQ-A8VB-01 10 101370616 101370616 G C SLC25A28 Missense_Mutation p.A362G 0.49 deleterious_low_confidence(0.01) benign(0.01) TCGA-QQ-A8VB-01 10 127408310 127408310 T A EDRF1 5'UTR 0.48 TCGA-QQ-A8VB-01 10 64159446 64159446 C T ZNF365 Intron 0.37 TCGA-QQ-A8VB-01 11 124765766 124765766 C T ROBO4 Missense_Mutation p.R241Q 0.50 tolerated(0.08) benign(0.029) TCGA-QQ-A8VB-01 11 16340011 16340011 C G SOX6 Missense_Mutation p.M142I 0.07 deleterious(0.01) probably_damaging(0.98) TCGA-QQ-A8VB-01 11 66473305 66473305 G A SPTBN2 Missense_Mutation p.R553W 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-QQ-A8VB-01 12 112450818 112450818 C T TMEM116 5'UTR 0.09 TCGA-QQ-A8VB-01 12 11422640 11422640 C G PRB3 5'UTR 0.07 TCGA-QQ-A8VB-01 12 11546062 11546062 C A PRB2 Missense_Mutation p.G317V 0.09 deleterious(0.01) unknown(0) TCGA-QQ-A8VB-01 12 44180256 44180256 G C IRAK4 Missense_Mutation p.D415H 0.33 deleterious(0) probably_damaging(1) TCGA-QQ-A8VB-01 12 52282059 52282059 G A ANKRD33 Missense_Mutation p.R30H 0.26 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-QQ-A8VB-01 12 52980754 52980754 C T KRT72 Missense_Mutation p.E441K 0.17 deleterious(0) benign(0.443) TCGA-QQ-A8VB-01 12 72667111 72667111 T C TRHDE Missense_Mutation p.S185P 0.05 tolerated(0.09) benign(0.355) TCGA-QQ-A8VB-01 12 96921105 96921105 G A C12orf55 Missense_Mutation p.E414K 0.26 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VB-01 14 101347126 101347126 C T RTL1 Missense_Mutation p.A1334T 0.32 tolerated_low_confidence(0.14) benign(0.019) TCGA-QQ-A8VB-01 14 106321098 106321098 G A IGHM Silent p.S297S 0.34 TCGA-QQ-A8VB-01 14 20404570 20404570 C G OR4K1 Missense_Mutation p.L249V 0.25 deleterious(0) probably_damaging(0.977) TCGA-QQ-A8VB-01 14 20665749 20665749 T A OR11G2 Nonsense_Mutation p.C85* 0.76 TCGA-QQ-A8VB-01 14 30068316 30068316 G A PRKD1 Missense_Mutation p.R695W 0.09 deleterious(0) probably_damaging(0.987) TCGA-QQ-A8VB-01 14 37737948 37737948 A G MIPOL1 Missense_Mutation p.I113V 0.07 tolerated(0.4) benign(0.03) TCGA-QQ-A8VB-01 14 63888802 63888802 T C PPP2R5E Missense_Mutation p.N122S 0.37 deleterious(0.02) probably_damaging(1) TCGA-QQ-A8VB-01 14 81952639 81952639 C T SEL1L Missense_Mutation p.D598N 0.37 deleterious(0) probably_damaging(0.963) TCGA-QQ-A8VB-01 15 38782624 38782624 C T RASGRP1 3'UTR 0.33 TCGA-QQ-A8VB-01 15 86807739 86807739 G T AGBL1 Missense_Mutation p.S400I 0.30 tolerated(0.09) benign(0.127) TCGA-QQ-A8VB-01 15 90892175 90892175 A G GABARAPL3 Silent p.P85P 0.06 TCGA-QQ-A8VB-01 16 20360150 20360150 C G UMOD Missense_Mutation p.G158A 0.37 deleterious(0.05) benign(0.249) TCGA-QQ-A8VB-01 16 31368589 31368589 G A ITGAX Missense_Mutation p.V112M 0.31 tolerated(0.12) benign(0.057) TCGA-QQ-A8VB-01 16 89167483 89167483 G A ACSF3 Missense_Mutation p.A132T 0.59 tolerated(0.26) benign(0.117) TCGA-QQ-A8VB-01 17 30321582 30321582 G A SUZ12 Splice_Site p.X480_splice 1.00 TCGA-QQ-A8VB-01 17 33321312 33321327 CGTTGAGTATGCAATG - LIG3 Frame_Shift_Del p.V492Rfs*59 0.40 TCGA-QQ-A8VB-01 17 36997511 36997511 G A C17orf98 Silent p.N44N 0.28 TCGA-QQ-A8VB-01 17 3839648 3839648 C G ATP2A3 Missense_Mutation p.D813H 0.30 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VB-01 17 39973438 39973438 A G FKBP10 Missense_Mutation p.Y125C 0.38 deleterious(0) probably_damaging(0.98) TCGA-QQ-A8VB-01 17 40704978 40704978 C T HSD17B1 Silent p.T9T 0.52 TCGA-QQ-A8VB-01 17 40729565 40729565 G A PSMC3IP Silent p.L17L 0.06 TCGA-QQ-A8VB-01 17 48262952 48262952 G A COL1A1 Missense_Mutation p.R1436C 0.21 unknown(0) TCGA-QQ-A8VB-01 17 54428240 54428240 C G ANKFN1 Missense_Mutation p.S104C 0.24 deleterious(0) probably_damaging(0.994) TCGA-QQ-A8VB-01 17 54925366 54925366 T A DGKE Silent p.V276V 0.22 TCGA-QQ-A8VB-01 17 79082342 79082342 G A BAIAP2 Intron 0.16 TCGA-QQ-A8VB-01 19 21132921 21132921 G C ZNF85 Missense_Mutation p.G534A 0.17 deleterious(0.04) benign(0.059) TCGA-QQ-A8VB-01 19 23543236 23543236 C T ZNF91 Missense_Mutation p.A849T 0.12 tolerated(1) probably_damaging(0.95) TCGA-QQ-A8VB-01 19 35251240 35251240 C T ZNF599 Missense_Mutation p.D156N 0.10 tolerated(0.12) benign(0.003) TCGA-QQ-A8VB-01 19 51274425 51274425 C T GPR32 Missense_Mutation p.H190Y 0.45 tolerated(1) benign(0.006) TCGA-QQ-A8VB-01 19 6772978 6772978 G A VAV1 Missense_Mutation p.A54T 0.22 tolerated(0.28) possibly_damaging(0.895) TCGA-QQ-A8VB-01 1 142699391 142699391 C A RP11-417J8.6 RNA 0.47 TCGA-QQ-A8VB-01 1 151011469 151011469 C A BNIPL Missense_Mutation p.Q134K 0.21 deleterious(0.05) benign(0.016) TCGA-QQ-A8VB-01 1 156694047 156694047 G A ISG20L2 Missense_Mutation p.R281C 0.31 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VB-01 1 168073922 168073922 G C GPR161 Missense_Mutation p.S76C 0.11 deleterious(0.01) probably_damaging(0.917) TCGA-QQ-A8VB-01 1 203278648 203278648 T C BTG2 3'UTR 0.36 TCGA-QQ-A8VB-01 1 220276895 220276895 A G IARS2 Missense_Mutation p.T353A 0.10 deleterious(0.01) benign(0.424) TCGA-QQ-A8VB-01 1 238048562 238048562 G T ZP4 Missense_Mutation p.A405D 0.18 tolerated(0.07) possibly_damaging(0.833) TCGA-QQ-A8VB-01 1 24409039 24409039 C T MYOM3 Intron 0.40 TCGA-QQ-A8VB-01 1 36319539 36319539 C T AGO4 3'UTR 0.13 TCGA-QQ-A8VB-01 1 38275372 38275372 T C MTF1 3'UTR 0.22 TCGA-QQ-A8VB-01 1 50574860 50574860 G A ELAVL4 Intron 0.09 TCGA-QQ-A8VB-01 1 54562007 54562007 G - TCEANC2 Frame_Shift_Del p.C163Sfs*13 0.28 TCGA-QQ-A8VB-01 1 75702733 75702733 C T SLC44A5 Missense_Mutation p.A227T 0.08 tolerated(0.08) benign(0.196) TCGA-QQ-A8VB-01 20 61477302 61477302 A G TCFL5 Intron 0.10 TCGA-QQ-A8VB-01 21 33372740 33372740 C T HUNK 3'UTR 0.44 TCGA-QQ-A8VB-01 22 43634868 43634868 G A SCUBE1 Nonsense_Mutation p.Q274* 0.93 TCGA-QQ-A8VB-01 2 102964451 102964451 T G IL1RL1 Missense_Mutation p.F339L 0.42 tolerated(1) benign(0) TCGA-QQ-A8VB-01 2 170606513 170606513 G A KLHL23 3'UTR 0.14 TCGA-QQ-A8VB-01 2 170668911 170668911 C T METTL5 Intron 0.33 TCGA-QQ-A8VB-01 2 183032884 183032885 GG - PDE1A Intron 0.34 TCGA-QQ-A8VB-01 2 201950243 201950243 T C NDUFB3 Missense_Mutation p.F68L 0.18 tolerated(1) benign(0.001) TCGA-QQ-A8VB-01 2 206628553 206628553 C T NRP2 Missense_Mutation p.R734W 0.11 deleterious(0) probably_damaging(0.991) TCGA-QQ-A8VB-01 2 238303373 238303373 G C COL6A3 Missense_Mutation p.A189G 0.26 probably_damaging(0.985) TCGA-QQ-A8VB-01 2 238303374 238303374 C T COL6A3 Missense_Mutation p.A189T 0.26 probably_damaging(0.981) TCGA-QQ-A8VB-01 2 23985148 23985148 C T ATAD2B Missense_Mutation p.E1109K 0.17 tolerated(0.26) benign(0.005) TCGA-QQ-A8VB-01 2 42285231 42285231 G T PKDCC 3'UTR 0.32 TCGA-QQ-A8VB-01 2 80831222 80831222 C T CTNNA2 Missense_Mutation p.T738I 0.06 deleterious(0.02) possibly_damaging(0.674) TCGA-QQ-A8VB-01 2 89475949 89475949 T A IGKV2-24 Nonsense_Mutation p.K75* 0.11 TCGA-QQ-A8VB-01 3 14174364 14174364 A T TMEM43 Splice_Site p.X148_splice 0.49 TCGA-QQ-A8VB-01 3 15079624 15079624 C G NR2C2 Missense_Mutation p.A516G 0.47 deleterious(0) possibly_damaging(0.9) TCGA-QQ-A8VB-01 3 170587991 170587991 A G RPL22L1 5'UTR 0.24 TCGA-QQ-A8VB-01 3 38812783 38812783 C T SCN10A Missense_Mutation p.V196I 0.47 tolerated(0.1) probably_damaging(0.927) TCGA-QQ-A8VB-01 3 9100143 9100143 C T SRGAP3 Missense_Mutation p.G272D 0.10 deleterious(0) probably_damaging(1) TCGA-QQ-A8VB-01 4 106197278 106197278 A G TET2 Missense_Mutation p.I1871V 0.46 tolerated(0.43) benign(0.075) TCGA-QQ-A8VB-01 4 155407622 155407622 T G DCHS2 Missense_Mutation p.E701D 0.07 tolerated_low_confidence(0.12) benign(0.126) TCGA-QQ-A8VB-01 5 140188746 140188746 G A PCDHA4 Silent p.A658A 0.17 TCGA-QQ-A8VB-01 5 140530432 140530432 G A PCDHB6 Silent p.P198P 0.28 TCGA-QQ-A8VB-01 5 142603756 142603756 G A ARHGAP26 3'UTR 0.16 TCGA-QQ-A8VB-01 5 167690302 167690302 C G TENM2 3'Flank 0.23 TCGA-QQ-A8VB-01 5 19473340 19473340 T A CDH18 Missense_Mutation p.T790S 0.22 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-QQ-A8VB-01 5 40947812 40947812 C G C7 Missense_Mutation p.L283V 0.30 deleterious(0) possibly_damaging(0.824) TCGA-QQ-A8VB-01 6 107389998 107389998 G A BEND3 Silent p.Y799Y 0.19 TCGA-QQ-A8VB-01 6 16146959 16146959 C T MYLIP Missense_Mutation p.L439F 0.29 deleterious(0.01) benign(0.158) TCGA-QQ-A8VB-01 7 100184237 100184237 C T FBXO24 5'Flank 0.25 TCGA-QQ-A8VB-01 7 128845587 128845587 G C SMO Missense_Mutation p.C295S 0.13 deleterious(0) probably_damaging(1) TCGA-QQ-A8VB-01 7 5391711 5391711 C A TNRC18 Nonsense_Mutation p.E1737* 0.29 TCGA-QQ-A8VB-01 7 65445390 65445390 G A GUSB Missense_Mutation p.P73S 0.18 deleterious(0.04) benign(0.428) TCGA-QQ-A8VB-01 7 86394663 86394663 C T GRM3 Missense_Mutation p.R68C 0.21 deleterious(0) probably_damaging(1) TCGA-QQ-A8VB-01 7 91730290 91730290 G A AKAP9 Missense_Mutation p.V3673I 0.57 benign(0.034) TCGA-QQ-A8VB-01 8 43197441 43197441 C T POTEA RNA 0.26 TCGA-QQ-A8VB-01 8 89053626 89053626 T C MMP16 3'UTR 0.14 TCGA-QQ-A8VB-01 8 9634471 9634471 C T TNKS 3'UTR 0.32 TCGA-QQ-A8VB-01 9 139401061 139401061 C T NOTCH1 Missense_Mutation p.C1311Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VB-01 X 146312597 146312597 G A MIR507 5'Flank 0.31 TCGA-QQ-A8VB-01 X 57358063 57358063 C T FAAH2 Missense_Mutation p.R149C 0.13 deleterious(0.02) benign(0.087) TCGA-QQ-A8VB-01 X 86888841 86888841 C T KLHL4 Nonsense_Mutation p.R548* 0.15 TCGA-QQ-A8VD-01 11 66627167 66627167 A G LRFN4 Missense_Mutation p.Y470C 0.09 deleterious(0) probably_damaging(1) TCGA-QQ-A8VD-01 12 10954711 10954711 G A TAS2R7 Silent p.N153N 0.07 TCGA-QQ-A8VD-01 12 67072671 67072671 G C GRIP1 Missense_Mutation p.S5C 0.08 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-QQ-A8VD-01 13 99100992 99100995 TGTT - FARP1 3'UTR 0.67 TCGA-QQ-A8VD-01 14 74824312 74824312 C T VRTN Missense_Mutation p.R276C 0.09 deleterious(0) possibly_damaging(0.861) TCGA-QQ-A8VD-01 15 48495411 48495411 T C CTXN2 3'UTR 0.11 TCGA-QQ-A8VD-01 15 84287088 84287088 C T SH3GL3 3'UTR 0.11 TCGA-QQ-A8VD-01 17 17896105 17896105 C T LRRC48 Silent p.C157C 0.08 TCGA-QQ-A8VD-01 17 263928 263928 A C C17orf97 3'UTR 0.06 TCGA-QQ-A8VD-01 17 61988159 61988159 C T CSHL1 Missense_Mutation p.A46T 0.05 deleterious(0.01) benign(0.006) TCGA-QQ-A8VD-01 17 67286015 67286015 A G ABCA5 Silent p.N590N 0.06 TCGA-QQ-A8VD-01 17 7140765 7140765 T C PHF23 Missense_Mutation p.D33G 0.09 deleterious(0) probably_damaging(0.956) TCGA-QQ-A8VD-01 1 144922234 144922234 C T PDE4DIP Missense_Mutation p.A312T 0.33 tolerated(0.13) benign(0.026) TCGA-QQ-A8VD-01 1 185070052 185070052 T C RNF2 3'UTR 0.06 TCGA-QQ-A8VD-01 1 202711598 202711598 A T KDM5B Nonsense_Mutation p.L837* 0.06 TCGA-QQ-A8VD-01 1 62675607 62675607 G A L1TD1 Silent p.L387L 0.05 TCGA-QQ-A8VD-01 2 228104874 228104874 C T COL4A3 Missense_Mutation p.P54S 0.07 probably_damaging(0.993) TCGA-QQ-A8VD-01 3 142984459 142984459 A G SLC9A9 3'UTR 0.05 TCGA-QQ-A8VD-01 3 51431691 51431691 A T RBM15B 3'UTR 0.08 TCGA-QQ-A8VD-01 5 38481096 38481096 C T LIFR 3'UTR 0.09 TCGA-QQ-A8VD-01 6 39157203 39157203 A G KCNK5 3'UTR 0.07 TCGA-QQ-A8VD-01 6 64423823 64423823 T C PHF3 3'UTR 0.05 TCGA-QQ-A8VD-01 7 135377097 135377097 G C SLC13A4 Silent p.V398V 0.12 TCGA-QQ-A8VD-01 9 14859459 14859459 A G FREM1 Missense_Mutation p.I118T 0.12 tolerated(0.92) benign(0) TCGA-QQ-A8VD-01 X 153033837 153033837 G T PLXNB3 Missense_Mutation p.G430V 0.22 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VF-01 10 102589014 102589014 T C PAX2 3'UTR 0.20 TCGA-QQ-A8VF-01 10 11797468 11797468 C T ECHDC3 Missense_Mutation p.A151V 0.82 deleterious(0) possibly_damaging(0.539) TCGA-QQ-A8VF-01 10 121356117 121356117 T C TIAL1 5'Flank 0.09 TCGA-QQ-A8VF-01 10 123923386 123923386 C T TACC2 Intron 0.93 TCGA-QQ-A8VF-01 10 124356557 124356557 G A DMBT1 Silent p.S968S 0.82 TCGA-QQ-A8VF-01 10 126370298 126370298 C T FAM53B Missense_Mutation p.G262S 0.34 deleterious(0.01) probably_damaging(1) TCGA-QQ-A8VF-01 10 126677346 126677348 TTC - CTBP2 3'Flank 0.13 TCGA-QQ-A8VF-01 10 129913670 129913670 G A MKI67 Silent p.G334G 0.79 TCGA-QQ-A8VF-01 10 134006240 134006240 C T DPYSL4 Silent p.G69G 0.47 TCGA-QQ-A8VF-01 10 134940809 134940809 C T GPR123 Silent p.Y158Y 0.35 TCGA-QQ-A8VF-01 10 135012705 135012705 G A KNDC1 Missense_Mutation p.R898H 0.78 tolerated(0.56) benign(0.053) TCGA-QQ-A8VF-01 10 135269866 135269866 G A SPRN Intron 0.75 TCGA-QQ-A8VF-01 10 26581501 26581501 G T GAD2 Missense_Mutation p.K498N 0.83 deleterious(0.03) probably_damaging(0.996) TCGA-QQ-A8VF-01 10 27702951 27702951 G - PTCHD3 Frame_Shift_Del p.R77Gfs*43 0.54 TCGA-QQ-A8VF-01 10 42831962 42831962 C T RP11-313J2.1 RNA 0.10 TCGA-QQ-A8VF-01 10 42831969 42831969 C G RP11-313J2.1 RNA 0.10 TCGA-QQ-A8VF-01 10 50340059 50340059 C T FAM170B Missense_Mutation p.G151S 0.15 tolerated(0.07) probably_damaging(0.92) TCGA-QQ-A8VF-01 10 55782844 55782844 G A PCDH15 Silent p.N778N 0.39 TCGA-QQ-A8VF-01 10 5681209 5681209 G A ASB13 3'UTR 0.30 TCGA-QQ-A8VF-01 10 61718326 61718326 A - C10orf40 Frame_Shift_Del p.L35* 0.25 TCGA-QQ-A8VF-01 10 63854861 63854862 - AT ARID5B 3'UTR 0.47 TCGA-QQ-A8VF-01 10 64973819 64973820 AG - JMJD1C Frame_Shift_Del p.L703Yfs*3 0.27 TCGA-QQ-A8VF-01 10 69676561 69676561 A T SIRT1 3'UTR 0.64 TCGA-QQ-A8VF-01 10 72434544 72434544 C T ADAMTS14 Silent p.S105S 0.71 TCGA-QQ-A8VF-01 10 73767476 73767476 C T CHST3 Silent p.C229C 0.57 TCGA-QQ-A8VF-01 10 75606992 75606992 C T CAMK2G Silent p.P270P 0.80 TCGA-QQ-A8VF-01 10 81056622 81056622 G A ZMIZ1 Intron 0.93 TCGA-QQ-A8VF-01 10 81074969 81074969 C A ZMIZ1 3'UTR 0.11 TCGA-QQ-A8VF-01 10 85904714 85904714 C T GHITM Missense_Mutation p.A142V 0.80 deleterious(0) probably_damaging(0.98) TCGA-QQ-A8VF-01 10 86004903 86004903 G - RGR Frame_Shift_Del p.M21Wfs*16 0.30 TCGA-QQ-A8VF-01 10 89272898 89272898 T - MINPP1 Frame_Shift_Del p.F286Sfs*22 0.28 TCGA-QQ-A8VF-01 10 90966895 90966896 - A CH25H Frame_Shift_Ins p.C52Lfs*25 0.21 TCGA-QQ-A8VF-01 10 99030400 99030400 C T ARHGAP19 Intron 0.66 TCGA-QQ-A8VF-01 10 99126540 99126540 C T RRP12 Silent p.E1058E 0.77 TCGA-QQ-A8VF-01 10 99376455 99376455 T - MORN4 Frame_Shift_Del p.N91Mfs*4 0.47 TCGA-QQ-A8VF-01 11 100864384 100864384 C T TMEM133 3'UTR 0.08 TCGA-QQ-A8VF-01 11 102991473 102991473 A - DYNC2H1 Frame_Shift_Del p.I399* 0.24 TCGA-QQ-A8VF-01 11 104912415 104912415 C T CARD16 Missense_Mutation p.M102I 0.71 tolerated(0.26) benign(0.032) TCGA-QQ-A8VF-01 11 10517126 10517126 C T AMPD3 Missense_Mutation p.R435W 0.78 deleterious(0.05) benign(0.004) TCGA-QQ-A8VF-01 11 108117798 108117798 C T ATM Missense_Mutation p.R337C 0.81 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 11 113568045 113568045 C T TMPRSS5 Missense_Mutation p.A142T 0.87 tolerated(0.07) benign(0.002) TCGA-QQ-A8VF-01 11 114578394 114578394 T C NXPE2 3'Flank 0.86 TCGA-QQ-A8VF-01 11 116734476 116734476 G A SIK3 Missense_Mutation p.R565C 0.79 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 11 117298753 117298753 G A DSCAML1 3'UTR 0.82 TCGA-QQ-A8VF-01 11 121008472 121008472 G A TECTA Missense_Mutation p.R1095H 0.75 tolerated(0.22) benign(0.027) TCGA-QQ-A8VF-01 11 123676412 123676412 C T OR6M1 Missense_Mutation p.V216M 0.76 tolerated(0.15) benign(0.029) TCGA-QQ-A8VF-01 11 124500680 124500681 - T TBRG1 Frame_Shift_Ins p.G295Wfs*29 0.29 TCGA-QQ-A8VF-01 11 125848222 125848222 G A CDON Silent p.C1111C 0.79 TCGA-QQ-A8VF-01 11 1268556 1268556 C A MUC5B Silent p.T3482T 0.62 TCGA-QQ-A8VF-01 11 12965366 12965366 A - TEAD1 3'UTR 0.44 TCGA-QQ-A8VF-01 11 129814836 129814836 G A PRDM10 Missense_Mutation p.R198W 0.83 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 11 14665759 14665761 CTT - PDE3B In_Frame_Del p.F49del 0.33 TCGA-QQ-A8VF-01 11 1577941 1577941 G A DUSP8 Missense_Mutation p.A562V 0.90 tolerated(0.19) benign(0.001) TCGA-QQ-A8VF-01 11 20405075 20405075 G - HTATIP2 3'UTR 0.45 TCGA-QQ-A8VF-01 11 32636355 32636355 C T CCDC73 Silent p.S503S 0.83 TCGA-QQ-A8VF-01 11 43342375 43342375 G A API5 Missense_Mutation p.R79Q 0.85 deleterious(0) probably_damaging(0.991) TCGA-QQ-A8VF-01 11 44219445 44219445 G A EXT2 Missense_Mutation p.A491T 0.10 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VF-01 11 45671007 45671007 G T CHST1 3'UTR 0.20 TCGA-QQ-A8VF-01 11 45954273 45954273 T - PHF21A 3'Flank 0.32 TCGA-QQ-A8VF-01 11 45954311 45954311 A - PHF21A 3'Flank 0.10 TCGA-QQ-A8VF-01 11 4674130 4674130 G A OR51E1 Missense_Mutation p.R125H 0.77 deleterious(0.01) probably_damaging(1) TCGA-QQ-A8VF-01 11 4676277 4676277 T C OR51E1 3'UTR 0.08 TCGA-QQ-A8VF-01 11 5173256 5173256 C T OR52A1 Missense_Mutation p.G115D 0.26 deleterious(0.01) benign(0.327) TCGA-QQ-A8VF-01 11 551688 551688 C T LRRC56 Silent p.P278P 0.76 TCGA-QQ-A8VF-01 11 57886553 57886553 G A OR9I1 Missense_Mutation p.R122C 0.86 deleterious(0.01) benign(0.082) TCGA-QQ-A8VF-01 11 58956662 58956662 C T DTX4 Missense_Mutation p.A342V 0.24 tolerated(0.11) possibly_damaging(0.481) TCGA-QQ-A8VF-01 11 61514219 61514219 C T DAGLA 3'UTR 0.88 TCGA-QQ-A8VF-01 11 61557272 61557272 C T TMEM258 Missense_Mutation p.V79M 0.89 deleterious(0) unknown(0) TCGA-QQ-A8VF-01 11 6238961 6238961 G A FAM160A2 Missense_Mutation p.R633W 1.00 deleterious(0.02) benign(0.292) TCGA-QQ-A8VF-01 11 62985107 62985107 G A SLC22A25 Missense_Mutation p.R203C 0.78 deleterious(0.01) probably_damaging(0.932) TCGA-QQ-A8VF-01 11 63918726 63918726 C T MACROD1 Missense_Mutation p.A168T 0.84 deleterious(0) benign(0.212) TCGA-QQ-A8VF-01 11 64011520 64011520 G - FKBP2 3'UTR 0.42 TCGA-QQ-A8VF-01 11 6411783 6411783 G - SMPD1 5'UTR 0.18 TCGA-QQ-A8VF-01 11 64559745 64559745 G A MAP4K2 Missense_Mutation p.R605W 0.76 deleterious(0) probably_damaging(0.948) TCGA-QQ-A8VF-01 11 64641914 64641914 C A EHD1 Nonsense_Mutation p.E161* 0.08 TCGA-QQ-A8VF-01 11 66276813 66276813 A G DPP3 3'UTR 0.07 TCGA-QQ-A8VF-01 11 6650972 6650972 C T DCHS1 Missense_Mutation p.V1656I 0.74 deleterious(0.01) benign(0.235) TCGA-QQ-A8VF-01 11 67379443 67379443 C T NDUFV1 Missense_Mutation p.R386C 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-QQ-A8VF-01 11 67656588 67656588 C T RP11-119D9.1 RNA 0.72 TCGA-QQ-A8VF-01 11 68552352 68552352 C A CPT1A Missense_Mutation p.R365M 0.75 deleterious(0.01) benign(0.256) TCGA-QQ-A8VF-01 11 688448 688448 C T DEAF1 Missense_Mutation p.A134T 0.88 tolerated(0.68) probably_damaging(0.995) TCGA-QQ-A8VF-01 11 70224244 70224244 C T PPFIA1 Missense_Mutation p.R1165W 0.86 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 11 70332229 70332229 C T SHANK2 Missense_Mutation p.R1391H 0.74 tolerated(0.07) possibly_damaging(0.522) TCGA-QQ-A8VF-01 11 71152392 71152392 C T DHCR7 Silent p.S169S 0.88 TCGA-QQ-A8VF-01 11 72537833 72537833 G A ATG16L2 Missense_Mutation p.R444Q 0.08 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 11 72945945 72945945 C T P2RY2 Silent p.I247I 0.78 TCGA-QQ-A8VF-01 11 77784094 77784094 C T NDUFC2 Missense_Mutation p.R87H 0.82 tolerated(0.45) benign(0.016) TCGA-QQ-A8VF-01 11 77926429 77926429 A G GAB2 3'UTR 0.06 TCGA-QQ-A8VF-01 11 89892422 89892422 T C NAALAD2 Silent p.I302I 0.81 TCGA-QQ-A8VF-01 11 94609520 94609520 G A AMOTL1 3'UTR 0.12 TCGA-QQ-A8VF-01 11 94609557 94609557 T C AMOTL1 3'UTR 0.17 TCGA-QQ-A8VF-01 11 9466748 9466751 TCTT - IPO7 3'UTR 0.68 TCGA-QQ-A8VF-01 12 101016125 101016125 C T GAS2L3 Missense_Mutation p.R241W 0.48 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 12 102813396 102813396 C T IGF1 Missense_Mutation p.R98Q 0.33 tolerated(0.64) benign(0.277) TCGA-QQ-A8VF-01 12 105611484 105611484 G A APPL2 Missense_Mutation p.T58I 0.45 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 12 10573118 10588557 12:10573118-10588557 - KLRC2 large deletion 0.24 TCGA-QQ-A8VF-01 12 10588554 10588557 ACTT - KLRC2 Frame_Shift_Del p.E10Gfs*31 0.43 TCGA-QQ-A8VF-01 12 106460771 106460771 G A NUAK1 Missense_Mutation p.R599C 0.36 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 12 107371421 107371422 - T MTERFD3 Frame_Shift_Ins p.E358Rfs*3 0.46 TCGA-QQ-A8VF-01 12 108912293 108912293 G A FICD Missense_Mutation p.V140M 0.38 tolerated(0.08) possibly_damaging(0.564) TCGA-QQ-A8VF-01 12 109046149 109046149 C T CORO1C Silent p.P300P 0.20 TCGA-QQ-A8VF-01 12 109210869 109210869 G A SSH1 Missense_Mutation p.R116C 0.61 deleterious(0.01) benign(0.223) TCGA-QQ-A8VF-01 12 109547829 109547829 C T UNG 3'UTR 0.49 TCGA-QQ-A8VF-01 12 110344435 110344435 A - TCHP Frame_Shift_Del p.K174Nfs*26 0.23 TCGA-QQ-A8VF-01 12 110969554 110969554 A - RAD9B 3'UTR 0.44 TCGA-QQ-A8VF-01 12 111748093 111748093 G A CUX2 Missense_Mutation p.G503S 0.37 tolerated(0.77) benign(0.002) TCGA-QQ-A8VF-01 12 112622419 112622419 C T HECTD4 Missense_Mutation p.G3305R 0.54 benign(0.33) TCGA-QQ-A8VF-01 12 113726030 113726030 G A TPCN1 Missense_Mutation p.R638Q 0.34 tolerated(0.15) probably_damaging(0.991) TCGA-QQ-A8VF-01 12 113731098 113731098 C T TPCN1 Missense_Mutation p.R832W 0.33 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 12 1137358 1137358 C T ERC1 Missense_Mutation p.R97C 0.13 deleterious(0) possibly_damaging(0.776) TCGA-QQ-A8VF-01 12 114352849 114352849 T C RBM19 Missense_Mutation p.K828R 0.06 deleterious(0.03) benign(0.062) TCGA-QQ-A8VF-01 12 117476878 117476878 A G TESC 3'UTR 0.20 TCGA-QQ-A8VF-01 12 118599616 118599616 G A TAOK3 Missense_Mutation p.R706W 0.43 deleterious(0) probably_damaging(0.988) TCGA-QQ-A8VF-01 12 120595770 120595770 C T GCN1L1 Silent p.T990T 0.58 TCGA-QQ-A8VF-01 12 120750737 120750737 G A SIRT4 Silent p.P281P 0.08 TCGA-QQ-A8VF-01 12 122246128 122246128 C T SETD1B Missense_Mutation p.R187W 0.29 probably_damaging(0.973) TCGA-QQ-A8VF-01 12 123087620 123087620 A - KNTC1 Frame_Shift_Del p.K1646Nfs*2 0.32 TCGA-QQ-A8VF-01 12 123332641 123332641 C T HIP1R Missense_Mutation p.R53C 0.39 deleterious(0.01) probably_damaging(0.932) TCGA-QQ-A8VF-01 12 123419916 123419916 G A ABCB9 Silent p.Y602Y 0.47 TCGA-QQ-A8VF-01 12 123893658 123893658 C - SETD8 3'UTR 0.28 TCGA-QQ-A8VF-01 12 124090517 124090517 G A DDX55 Missense_Mutation p.A50T 0.57 deleterious(0.01) possibly_damaging(0.871) TCGA-QQ-A8VF-01 12 124332584 124332584 C A DNAH10 Missense_Mutation p.A1846E 0.43 probably_damaging(1) TCGA-QQ-A8VF-01 12 124382335 124382335 C T DNAH10 Missense_Mutation p.P2982L 0.24 probably_damaging(0.96) TCGA-QQ-A8VF-01 12 124498775 124498775 C T ZNF664 3'UTR 0.19 TCGA-QQ-A8VF-01 12 124829170 124829170 G A NCOR2 Missense_Mutation p.R1563W 0.67 probably_damaging(0.994) TCGA-QQ-A8VF-01 12 125397875 125397875 C T UBC Missense_Mutation p.R148H 0.41 tolerated(0.07) possibly_damaging(0.749) TCGA-QQ-A8VF-01 12 132237770 132237770 C G SFSWAP Missense_Mutation p.T395S 0.44 tolerated(0.61) benign(0.028) TCGA-QQ-A8VF-01 12 132407351 132407353 AGA - ULK1 3'UTR 0.19 TCGA-QQ-A8VF-01 12 132593238 132593238 A T EP400NL Missense_Mutation p.D337V 0.46 tolerated_low_confidence(0.22) benign(0.012) TCGA-QQ-A8VF-01 12 132839143 132839143 G A GALNT9 Missense_Mutation p.A163V 0.61 deleterious(0) probably_damaging(0.988) TCGA-QQ-A8VF-01 12 132852955 132852955 G A RP13-895J2.2 RNA 0.24 TCGA-QQ-A8VF-01 12 132862863 132862863 C T GALNT9 Missense_Mutation p.R131Q 0.04 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 12 133362983 133362983 G A GOLGA3 Missense_Mutation p.A1022V 0.52 tolerated(0.12) benign(0.078) TCGA-QQ-A8VF-01 12 133417853 133417853 C T CHFR 3'UTR 0.48 TCGA-QQ-A8VF-01 12 133430146 133430146 C T CHFR Missense_Mutation p.V427M 0.29 tolerated(0.37) benign(0.15) TCGA-QQ-A8VF-01 12 21174482 21174482 A C SLCO1B7 Silent p.S102S 0.23 TCGA-QQ-A8VF-01 12 22076894 22076894 G A ABCC9 Intron 0.61 TCGA-QQ-A8VF-01 12 27817366 27817366 C A PPFIBP1 Silent p.A346A 0.39 TCGA-QQ-A8VF-01 12 27829478 27829478 C T PPFIBP1 Missense_Mutation p.R527W 0.40 deleterious(0) probably_damaging(0.988) TCGA-QQ-A8VF-01 12 29689115 29689115 A - TMTC1 Intron 0.29 TCGA-QQ-A8VF-01 12 30884386 30884386 G A CAPRIN2 Silent p.I317I 0.32 TCGA-QQ-A8VF-01 12 41587902 41587902 C T PDZRN4 Missense_Mutation p.S252L 0.37 deleterious_low_confidence(0.02) benign(0.092) TCGA-QQ-A8VF-01 12 42503406 42503407 - T GXYLT1 Frame_Shift_Ins p.L192Tfs*3 0.38 TCGA-QQ-A8VF-01 12 43945045 43945045 G A ADAMTS20 Silent p.Y40Y 0.51 TCGA-QQ-A8VF-01 12 46299047 46299047 A G ARID2 3'UTR 0.30 TCGA-QQ-A8VF-01 12 46299374 46299374 G A ARID2 3'UTR 0.49 TCGA-QQ-A8VF-01 12 48482596 48482596 C T SENP1 Missense_Mutation p.R123Q 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-QQ-A8VF-01 12 49165679 49165679 G A ADCY6 Silent p.D955D 0.32 TCGA-QQ-A8VF-01 12 49230476 49230476 C T DDX23 Missense_Mutation p.R371Q 0.44 deleterious(0) probably_damaging(0.983) TCGA-QQ-A8VF-01 12 49420108 49420108 C T KMT2D Missense_Mutation p.R5214H 0.11 unknown(0) TCGA-QQ-A8VF-01 12 49426022 49426022 G - KMT2D Frame_Shift_Del p.Q4156Nfs*5 0.24 TCGA-QQ-A8VF-01 12 50052240 50052240 C T FMNL3 Missense_Mutation p.R197H 0.49 deleterious(0.01) probably_damaging(0.936) TCGA-QQ-A8VF-01 12 50190136 50190136 G A NCKAP5L Nonsense_Mutation p.R503* 0.53 TCGA-QQ-A8VF-01 12 50754627 50754627 C T FAM186A Silent p.T165T 0.39 TCGA-QQ-A8VF-01 12 51636759 51636759 G A DAZAP2 3'Flank 0.46 TCGA-QQ-A8VF-01 12 52710663 52710663 C T KRT83 Missense_Mutation p.E299K 0.44 deleterious(0.04) possibly_damaging(0.668) TCGA-QQ-A8VF-01 12 53011879 53011879 C T KRT73 Missense_Mutation p.A144T 0.34 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 12 53499716 53499716 C T SOAT2 Missense_Mutation p.R121C 0.50 deleterious(0.02) benign(0.058) TCGA-QQ-A8VF-01 12 53554908 53554908 C T CSAD Intron 0.43 TCGA-QQ-A8VF-01 12 53585223 53585223 G A ITGB7 3'UTR 0.71 TCGA-QQ-A8VF-01 12 53587124 53587124 C T ITGB7 Missense_Mutation p.R509Q 0.42 tolerated(0.18) benign(0.007) TCGA-QQ-A8VF-01 12 53679927 53679927 T C ESPL1 Missense_Mutation p.I1136T 0.40 tolerated(0.6) benign(0) TCGA-QQ-A8VF-01 12 54902248 54902248 C T NCKAP1L Missense_Mutation p.R147W 0.53 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 12 56638162 56638162 G A ANKRD52 Missense_Mutation p.T927M 0.25 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 12 56726885 56726885 G A PAN2 5'UTR 0.41 TCGA-QQ-A8VF-01 12 56750350 56750350 C T STAT2 Silent p.A2A 0.55 TCGA-QQ-A8VF-01 12 57569379 57569380 - A LRP1 Frame_Shift_Ins p.H1230Afs*28 0.15 TCGA-QQ-A8VF-01 12 57572242 57572242 G - LRP1 Frame_Shift_Del p.E1490Rfs*80 0.20 TCGA-QQ-A8VF-01 12 57648113 57648113 G A R3HDM2 3'UTR 0.44 TCGA-QQ-A8VF-01 12 57858552 57858552 C T GLI1 Missense_Mutation p.T97M 0.54 deleterious(0) probably_damaging(0.932) TCGA-QQ-A8VF-01 12 62996577 62996577 T C C12orf61 3'UTR 0.14 TCGA-QQ-A8VF-01 12 66359631 66359632 - A HMGA2 3'UTR 0.19 TCGA-QQ-A8VF-01 12 69085824 69085824 C A NUP107 Missense_Mutation p.P127H 0.39 tolerated(0.2) benign(0.001) TCGA-QQ-A8VF-01 12 69141749 69141749 G A SLC35E3 Missense_Mutation p.D148N 0.45 deleterious(0.01) benign(0.301) TCGA-QQ-A8VF-01 12 69229624 69229624 G A MDM2 Missense_Mutation p.V234I 0.07 tolerated(0.44) probably_damaging(0.949) TCGA-QQ-A8VF-01 12 7045534 7045534 G A ATN1 Silent p.A368A 0.65 TCGA-QQ-A8VF-01 12 72009055 72009055 C T ZFC3H1 Missense_Mutation p.R1729H 0.50 tolerated(0.63) benign(0) TCGA-QQ-A8VF-01 12 72425419 72425419 G A TPH2 Missense_Mutation p.D473N 0.39 deleterious(0.02) possibly_damaging(0.627) TCGA-QQ-A8VF-01 12 75897812 75897812 G A KRR1 Nonsense_Mutation p.R235* 0.35 TCGA-QQ-A8VF-01 12 78515954 78515954 G A NAV3 Silent p.S1328S 0.25 TCGA-QQ-A8VF-01 12 78604234 78604234 C T NAV3 Silent p.C2343C 0.35 TCGA-QQ-A8VF-01 12 7947747 7947747 C A NANOG 3'UTR 0.14 TCGA-QQ-A8VF-01 12 86373908 86373908 C T MGAT4C Missense_Mutation p.R199H 0.40 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 12 9312597 9312597 T C PZP Missense_Mutation p.K1025R 0.73 deleterious(0.03) probably_damaging(0.992) TCGA-QQ-A8VF-01 12 9334673 9334673 G A PZP Silent p.D529D 0.81 TCGA-QQ-A8VF-01 12 94072703 94072703 C A CRADD Silent p.L51L 0.45 TCGA-QQ-A8VF-01 12 97051708 97051708 A G C12orf55 Missense_Mutation p.I1717V 0.13 tolerated(0.13) benign(0.138) TCGA-QQ-A8VF-01 13 103326745 103326745 G A TPP2 Missense_Mutation p.A1149T 0.75 tolerated(0.33) benign(0.001) TCGA-QQ-A8VF-01 13 113750867 113750867 C T MCF2L Silent p.Y1064Y 0.72 TCGA-QQ-A8VF-01 13 29599208 29599208 C T MTUS2 Missense_Mutation p.R135W 0.81 tolerated(0.15) benign(0.004) TCGA-QQ-A8VF-01 13 29599436 29599436 G A MTUS2 Missense_Mutation p.D211N 0.79 deleterious(0.03) benign(0.005) TCGA-QQ-A8VF-01 13 32907421 32907421 A - BRCA2 Frame_Shift_Del p.I605Yfs*9 0.31 TCGA-QQ-A8VF-01 13 35692417 35692417 C T NBEA Missense_Mutation p.T712M 0.16 deleterious(0) probably_damaging(0.986) TCGA-QQ-A8VF-01 13 46820665 46820665 T - LRRC63 Frame_Shift_Del p.F333Lfs*3 0.12 TCGA-QQ-A8VF-01 13 48941711 48941711 A - RB1 Frame_Shift_Del p.T342Lfs*7 0.40 TCGA-QQ-A8VF-01 13 70275360 70275360 G A KLHL1 3'UTR 0.58 TCGA-QQ-A8VF-01 13 99336932 99336932 C A SLC15A1 3'UTR 0.08 TCGA-QQ-A8VF-01 14 100792564 100792564 G A SLC25A47 Missense_Mutation p.R48H 0.34 tolerated(0.11) benign(0.052) TCGA-QQ-A8VF-01 14 101348236 101348236 C T RTL1 Missense_Mutation p.V964I 0.38 tolerated(0.24) probably_damaging(0.992) TCGA-QQ-A8VF-01 14 102476350 102476350 G A DYNC1H1 Missense_Mutation p.A2050T 0.21 possibly_damaging(0.864) TCGA-QQ-A8VF-01 14 103450052 103450052 C A CDC42BPB Silent p.S244S 0.57 TCGA-QQ-A8VF-01 14 105225917 105225917 C T SIVA1 3'UTR 0.35 TCGA-QQ-A8VF-01 14 105419759 105419759 T - AHNAK2 Frame_Shift_Del p.M677Cfs*33 0.26 TCGA-QQ-A8VF-01 14 105614481 105614481 G - JAG2 Frame_Shift_Del p.G741Afs*21 0.35 TCGA-QQ-A8VF-01 14 105846438 105846438 C T PACS2 Missense_Mutation p.R358W 0.59 tolerated(0.07) possibly_damaging(0.84) TCGA-QQ-A8VF-01 14 105946025 105946025 G A CRIP2 3'UTR 0.51 TCGA-QQ-A8VF-01 14 106090953 106090953 C A IGHG4 Missense_Mutation p.G282C 0.33 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 14 20711150 20711150 C - OR11H4 Frame_Shift_Del p.M69Cfs*24 0.31 TCGA-QQ-A8VF-01 14 20852291 20852291 C T TEP1 Missense_Mutation p.R1147H 0.10 tolerated(0.08) benign(0.017) TCGA-QQ-A8VF-01 14 20871947 20871947 G A TEP1 Silent p.L377L 0.40 TCGA-QQ-A8VF-01 14 20876151 20876151 G T TEP1 Missense_Mutation p.L150M 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.653) TCGA-QQ-A8VF-01 14 20924117 20924118 AA - APEX1 Frame_Shift_Del p.K35Rfs*11 0.36 TCGA-QQ-A8VF-01 14 21794291 21794291 G A RPGRIP1 Missense_Mutation p.R890Q 0.56 tolerated(1) benign(0) TCGA-QQ-A8VF-01 14 21820014 21820014 T A SUPT16H 3'UTR 0.13 TCGA-QQ-A8VF-01 14 21852192 21852192 T C SUPT16H 5'UTR 0.22 TCGA-QQ-A8VF-01 14 22111570 22111570 G A TRAV1-2 Silent p.T30T 0.43 TCGA-QQ-A8VF-01 14 22783288 22783288 C - TRAV40 Frame_Shift_Del p.I87Lfs*2 0.28 TCGA-QQ-A8VF-01 14 23524884 23524884 C T CDH24 Missense_Mutation p.R20H 0.44 tolerated(0.7) benign(0.004) TCGA-QQ-A8VF-01 14 24546453 24546453 A G CPNE6 Missense_Mutation p.M464V 0.26 deleterious(0.03) benign(0.344) TCGA-QQ-A8VF-01 14 24606416 24606416 T C PSME1 Splice_Site p.X45_splice 0.41 TCGA-QQ-A8VF-01 14 24629775 24629775 G A RNF31 Missense_Mutation p.R1071Q 0.26 tolerated(0.12) benign(0.028) TCGA-QQ-A8VF-01 14 24653267 24653267 C T IPO4 Silent p.A602A 0.56 TCGA-QQ-A8VF-01 14 24773449 24773449 G A NOP9 Missense_Mutation p.R538H 0.53 tolerated(0.18) benign(0.008) TCGA-QQ-A8VF-01 14 25043467 25043467 C T CTSG Missense_Mutation p.R193Q 0.31 tolerated(0.18) benign(0.399) TCGA-QQ-A8VF-01 14 25101306 25101306 G A GZMB Missense_Mutation p.R120W 0.56 deleterious(0.04) benign(0.067) TCGA-QQ-A8VF-01 14 31139538 31139539 - A SCFD1 Frame_Shift_Ins p.N313Kfs*6 0.17 TCGA-QQ-A8VF-01 14 36123660 36123660 G A RALGAPA1 Silent p.H1334H 0.26 TCGA-QQ-A8VF-01 14 38061640 38061640 C A FOXA1 Missense_Mutation p.G117C 0.21 deleterious(0.01) probably_damaging(0.932) TCGA-QQ-A8VF-01 14 38679148 38679148 C T SSTR1 Missense_Mutation p.S185L 0.11 deleterious(0) probably_damaging(0.968) TCGA-QQ-A8VF-01 14 39650639 39650639 C T PNN Nonsense_Mutation p.R576* 0.18 TCGA-QQ-A8VF-01 14 47530771 47530771 T - MDGA2 Frame_Shift_Del p.G403Dfs*22 0.33 TCGA-QQ-A8VF-01 14 55512402 55512402 T - SOCS4 3'UTR 0.17 TCGA-QQ-A8VF-01 14 58583159 58583159 G A C14orf37 Intron 0.57 TCGA-QQ-A8VF-01 14 60212466 60212466 G A RTN1 Silent p.D325D 0.49 TCGA-QQ-A8VF-01 14 64598984 64598984 T - SYNE2 Frame_Shift_Del p.F4783Sfs*10 0.36 TCGA-QQ-A8VF-01 14 64940851 64940851 G A AKAP5 3'UTR 0.44 TCGA-QQ-A8VF-01 14 67862208 67862208 G A PLEK2 Silent p.T100T 0.58 TCGA-QQ-A8VF-01 14 68249671 68249671 C T ZFYVE26 Missense_Mutation p.V1400I 0.57 tolerated(0.19) benign(0.064) TCGA-QQ-A8VF-01 14 69254830 69254830 T - ZFP36L1 3'UTR 0.22 TCGA-QQ-A8VF-01 14 71197329 71197329 G A MAP3K9 Missense_Mutation p.T1042M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-QQ-A8VF-01 14 71199824 71199824 G A MAP3K9 Silent p.L768L 0.60 TCGA-QQ-A8VF-01 14 73029177 73029177 C T RGS6 3'UTR 0.15 TCGA-QQ-A8VF-01 14 73570035 73570035 C T RBM25 Nonsense_Mutation p.R335* 0.42 TCGA-QQ-A8VF-01 14 73686056 73686056 A C PSEN1 3'UTR 0.12 TCGA-QQ-A8VF-01 14 74086514 74086514 A - ACOT6 Frame_Shift_Del p.K200Nfs*? 0.25 TCGA-QQ-A8VF-01 14 74425743 74425743 G A COQ6 Missense_Mutation p.D228N 0.45 tolerated(0.38) benign(0.33) TCGA-QQ-A8VF-01 14 74970272 74970272 G A LTBP2 Silent p.G1540G 0.28 TCGA-QQ-A8VF-01 14 88945576 88945576 G A PTPN21 Silent p.R733R 0.40 TCGA-QQ-A8VF-01 14 90730394 90730394 G A PSMC1 Missense_Mutation p.V159M 0.36 deleterious(0) benign(0.189) TCGA-QQ-A8VF-01 14 91755617 91755617 G A CCDC88C Missense_Mutation p.R1425C 0.18 deleterious(0) probably_damaging(0.973) TCGA-QQ-A8VF-01 14 93301978 93301978 C T GOLGA5 Missense_Mutation p.R674C 0.35 deleterious(0) probably_damaging(0.994) TCGA-QQ-A8VF-01 14 93537160 93537160 C T ITPK1 Intron 0.42 TCGA-QQ-A8VF-01 14 96707546 96707546 C T BDKRB2 Missense_Mutation p.T294M 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-QQ-A8VF-01 14 99636599 99636599 T - BCL11B 3'UTR 0.39 TCGA-QQ-A8VF-01 15 100537661 100537661 G A ADAMTS17 Missense_Mutation p.R909W 0.19 deleterious(0) probably_damaging(0.94) TCGA-QQ-A8VF-01 15 23445400 23445400 T C AC100757.1 3'Flank 0.27 TCGA-QQ-A8VF-01 15 25953150 25953150 G A ATP10A Missense_Mutation p.R850C 0.55 deleterious(0.01) benign(0.025) TCGA-QQ-A8VF-01 15 28211953 28211953 C T OCA2 Missense_Mutation p.G507R 0.13 tolerated(0.31) benign(0.082) TCGA-QQ-A8VF-01 15 30008873 30008873 C T TJP1 Missense_Mutation p.E1382K 0.42 tolerated_low_confidence(0.15) benign(0.01) TCGA-QQ-A8VF-01 15 30012821 30012821 G A TJP1 Missense_Mutation p.T835M 0.41 tolerated(0.11) possibly_damaging(0.52) TCGA-QQ-A8VF-01 15 31354785 31354788 TTCT - TRPM1 Frame_Shift_Del p.K378Nfs*21 0.42 TCGA-QQ-A8VF-01 15 31669548 31669548 G T KLF13 3'UTR 0.37 TCGA-QQ-A8VF-01 15 32929500 32929500 C T ARHGAP11A Silent p.V842V 0.11 TCGA-QQ-A8VF-01 15 33446451 33446451 G A FMN1 Missense_Mutation p.P222L 0.46 tolerated(0.12) benign(0.086) TCGA-QQ-A8VF-01 15 33952600 33952600 C T RYR3 Missense_Mutation p.A1533V 0.25 benign(0.326) TCGA-QQ-A8VF-01 15 38800148 38800148 G A RASGRP1 Missense_Mutation p.R341W 0.50 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 15 41195029 41195029 G A VPS18 Silent p.A804A 0.55 TCGA-QQ-A8VF-01 15 41862463 41862463 C T TYRO3 Missense_Mutation p.R470W 0.38 deleterious(0.01) benign(0.006) TCGA-QQ-A8VF-01 15 42137880 42137880 G A PLA2G4B Missense_Mutation p.G699R 0.36 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 15 42162518 42162518 G A SPTBN5 Missense_Mutation p.R1866W 0.40 benign(0.01) TCGA-QQ-A8VF-01 15 42602498 42602498 G A GANC Missense_Mutation p.R247H 0.20 probably_damaging(1) TCGA-QQ-A8VF-01 15 48063749 48063749 C T SEMA6D Missense_Mutation p.R997C 0.51 deleterious(0.04) possibly_damaging(0.726) TCGA-QQ-A8VF-01 15 48522630 48522630 G A SLC12A1 Missense_Mutation p.R302Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 15 49036443 49036443 T - CEP152 Frame_Shift_Del p.I1277Lfs*20 0.36 TCGA-QQ-A8VF-01 15 51740698 51740698 C T DMXL2 3'UTR 0.34 TCGA-QQ-A8VF-01 15 52357025 52357025 G A MAPK6 Missense_Mutation p.S665N 0.19 tolerated_low_confidence(0.71) benign(0.001) TCGA-QQ-A8VF-01 15 52442107 52442107 C T GNB5 Missense_Mutation p.V131M 0.59 deleterious(0.03) probably_damaging(0.989) TCGA-QQ-A8VF-01 15 52885877 52885877 G A FAM214A Silent p.A902A 0.50 TCGA-QQ-A8VF-01 15 54914591 54914591 C T UNC13C Missense_Mutation p.T2058M 0.40 deleterious_low_confidence(0) probably_damaging(0.961) TCGA-QQ-A8VF-01 15 59181749 59181749 C T SLTM Missense_Mutation p.R695H 0.43 deleterious(0) unknown(0) TCGA-QQ-A8VF-01 15 64026990 64026990 C T HERC1 Missense_Mutation p.R860Q 0.39 probably_damaging(0.995) TCGA-QQ-A8VF-01 15 64041614 64041614 G A HERC1 Missense_Mutation p.S724L 0.46 probably_damaging(0.955) TCGA-QQ-A8VF-01 15 64458402 64458402 C T CSNK1G1 3'UTR 0.38 TCGA-QQ-A8VF-01 15 65153755 65153755 C T AC069368.3 Missense_Mutation p.T155M 0.43 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 15 65351740 65351740 G A RASL12 Silent p.S59S 0.43 TCGA-QQ-A8VF-01 15 66180859 66180859 G T RAB11A 3'UTR 0.11 TCGA-QQ-A8VF-01 15 67713628 67713628 G - IQCH Splice_Site p.X741_splice 0.21 TCGA-QQ-A8VF-01 15 73076270 73076270 G A ADPGK 5'Flank 0.18 TCGA-QQ-A8VF-01 15 74367137 74367137 C T GOLGA6A Silent p.A351A 0.23 TCGA-QQ-A8VF-01 15 75013982 75013982 T C CYP1A1 Missense_Mutation p.Q301R 0.05 tolerated(0.18) benign(0.022) TCGA-QQ-A8VF-01 15 75094740 75094740 C T CSK Silent p.P413P 0.40 TCGA-QQ-A8VF-01 15 76634218 76634218 C A ISL2 3'UTR 0.48 TCGA-QQ-A8VF-01 15 76763678 76763678 T C SCAPER Splice_Site p.X985_splice 0.24 TCGA-QQ-A8VF-01 15 79223824 79223824 C T CTSH Missense_Mutation p.A173T 0.45 deleterious(0) probably_damaging(0.995) TCGA-QQ-A8VF-01 15 81295659 81295659 G A MESDC1 Silent p.S349S 0.28 TCGA-QQ-A8VF-01 15 81440887 81440887 G A C15orf26 3'UTR 0.39 TCGA-QQ-A8VF-01 15 83499662 83499662 A G WHAMM Silent p.P651P 0.57 TCGA-QQ-A8VF-01 15 84582094 84582094 G A ADAMTSL3 Missense_Mutation p.A651T 0.32 tolerated(0.48) benign(0.222) TCGA-QQ-A8VF-01 15 85348629 85348629 G A ZNF592 3'UTR 0.21 TCGA-QQ-A8VF-01 15 85432063 85432063 G A SLC28A1 Missense_Mutation p.E53K 0.41 tolerated(0.74) benign(0.003) TCGA-QQ-A8VF-01 15 89402169 89402169 A G ACAN Missense_Mutation p.E2118G 0.23 deleterious(0) possibly_damaging(0.717) TCGA-QQ-A8VF-01 15 90126122 90126122 G A TICRR Missense_Mutation p.R287H 0.49 tolerated(0.26) benign(0.024) TCGA-QQ-A8VF-01 15 90171888 90171888 G A KIF7 Missense_Mutation p.T1265M 0.19 tolerated(0.25) benign(0.003) TCGA-QQ-A8VF-01 15 91421368 91421368 G A FURIN Missense_Mutation p.R225H 0.26 deleterious(0) probably_damaging(0.953) TCGA-QQ-A8VF-01 15 91422144 91422144 G A FURIN Missense_Mutation p.E331K 0.43 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VF-01 15 93595476 93595476 G A RGMA Missense_Mutation p.P139L 0.13 tolerated(0.24) probably_damaging(1) TCGA-QQ-A8VF-01 15 96877774 96877774 G A NR2F2 Silent p.A304A 0.23 TCGA-QQ-A8VF-01 15 99507361 99507361 A - IGF1R 3'UTR 0.43 TCGA-QQ-A8VF-01 16 11772532 11772533 - G SNN 3'UTR 0.23 TCGA-QQ-A8VF-01 16 11772615 11772616 - T SNN 3'UTR 0.40 TCGA-QQ-A8VF-01 16 1254318 1254318 G A CACNA1H Missense_Mutation p.E771K 0.88 tolerated(0.26) benign(0.003) TCGA-QQ-A8VF-01 16 1420261 1420261 C T UNKL Silent p.P482P 0.67 TCGA-QQ-A8VF-01 16 19722724 19722724 T - KNOP1 Frame_Shift_Del p.G320Afs*8 0.42 TCGA-QQ-A8VF-01 16 20386165 20386165 G T PDILT Missense_Mutation p.D220E 0.20 deleterious(0.01) probably_damaging(1) TCGA-QQ-A8VF-01 16 20554527 20554527 G A ACSM2B Missense_Mutation p.R447W 0.52 deleterious(0) probably_damaging(0.983) TCGA-QQ-A8VF-01 16 2143577 2143577 G A PKD1 Missense_Mutation p.R3662C 0.83 probably_damaging(0.987) TCGA-QQ-A8VF-01 16 2293092 2293092 G A ECI1 Nonsense_Mutation p.Q233* 0.80 TCGA-QQ-A8VF-01 16 23160139 23160139 G T USP31 Silent p.L151L 0.88 TCGA-QQ-A8VF-01 16 24583183 24583183 A - RBBP6 Frame_Shift_Del p.E1601Sfs*18 0.30 TCGA-QQ-A8VF-01 16 24815560 24815560 C T TNRC6A Nonsense_Mutation p.R1253* 0.82 TCGA-QQ-A8VF-01 16 28944727 28944727 G A CD19 Silent p.T244T 0.79 TCGA-QQ-A8VF-01 16 30017590 30017590 G A DOC2A Nonsense_Mutation p.Q374* 0.77 TCGA-QQ-A8VF-01 16 30364729 30364729 C T CD2BP2 Silent p.A256A 0.72 TCGA-QQ-A8VF-01 16 3065456 3065456 C - CLDN6 Frame_Shift_Del p.S190Pfs*70 0.51 TCGA-QQ-A8VF-01 16 30735517 30735517 C T SRCAP Missense_Mutation p.A1591V 0.77 possibly_damaging(0.499) TCGA-QQ-A8VF-01 16 347756 347756 C T AXIN1 Missense_Mutation p.A584T 0.84 tolerated(0.52) benign(0.001) TCGA-QQ-A8VF-01 16 4924567 4924567 C T UBN1 Missense_Mutation p.A719V 0.75 tolerated(0.29) benign(0.002) TCGA-QQ-A8VF-01 16 4930261 4930261 G A UBN1 3'UTR 0.83 TCGA-QQ-A8VF-01 16 49670144 49670144 C T ZNF423 Silent p.T973T 0.50 TCGA-QQ-A8VF-01 16 5046400 5046400 C A SEC14L5 Missense_Mutation p.P240H 0.18 deleterious(0) probably_damaging(0.936) TCGA-QQ-A8VF-01 16 50667135 50667135 C - NKD1 Frame_Shift_Del p.R288Afs*59 0.31 TCGA-QQ-A8VF-01 16 55513537 55513537 T C MMP2 Missense_Mutation p.L49S 0.08 deleterious(0) possibly_damaging(0.658) TCGA-QQ-A8VF-01 16 57718064 57718064 G A GPR97 Missense_Mutation p.V368I 0.74 tolerated(1) benign(0.002) TCGA-QQ-A8VF-01 16 57760030 57760030 C T CCDC135 Silent p.D603D 0.93 TCGA-QQ-A8VF-01 16 613987 613987 C T C16orf11 Silent p.A231A 0.77 TCGA-QQ-A8VF-01 16 624604 624604 G A PIGQ Missense_Mutation p.R177H 0.76 tolerated_low_confidence(0.15) benign(0.021) TCGA-QQ-A8VF-01 16 66819693 66819693 A G CCDC79 Silent p.N232N 0.08 TCGA-QQ-A8VF-01 16 66887816 66887816 G A CA7 3'UTR 0.85 TCGA-QQ-A8VF-01 16 67270531 67270531 A C FHOD1 Silent p.A416A 0.52 TCGA-QQ-A8VF-01 16 68404829 68404829 G A SMPD3 Missense_Mutation p.A419V 0.78 tolerated(0.35) benign(0.013) TCGA-QQ-A8VF-01 16 70694005 70694005 C T IL34 Missense_Mutation p.P215L 0.88 tolerated_low_confidence(0.62) benign(0.006) TCGA-QQ-A8VF-01 16 72984722 72984722 C T ZFHX3 Silent p.T954T 0.87 TCGA-QQ-A8VF-01 16 74452000 74452000 G A CLEC18B Missense_Mutation p.A138V 0.40 tolerated(0.23) benign(0.021) TCGA-QQ-A8VF-01 16 7568333 7568333 C T RBFOX1 Missense_Mutation p.T91M 0.74 deleterious(0.04) benign(0.427) TCGA-QQ-A8VF-01 16 7761659 7761659 A - RBFOX1 3'UTR 0.10 TCGA-QQ-A8VF-01 16 780263 780263 C T NARFL 3'UTR 0.78 TCGA-QQ-A8VF-01 16 81077298 81077298 C T ATMIN Silent p.L399L 0.71 TCGA-QQ-A8VF-01 16 830496 830496 G A MSLNL Missense_Mutation p.R169C 0.17 benign(0.14) TCGA-QQ-A8VF-01 16 83829734 83829734 C T CDH13 3'Flank 0.71 TCGA-QQ-A8VF-01 16 84879562 84879562 C T CRISPLD2 Intron 0.07 TCGA-QQ-A8VF-01 16 85822579 85822579 C T EMC8 Splice_Site p.X103_splice 0.96 TCGA-QQ-A8VF-01 16 85945236 85945236 G A IRF8 Missense_Mutation p.R140H 0.83 tolerated(0.56) benign(0.006) TCGA-QQ-A8VF-01 16 87738843 87738843 C T FLJ00104 5'UTR 0.86 TCGA-QQ-A8VF-01 16 87866325 87866325 G A SLC7A5 3'UTR 0.89 TCGA-QQ-A8VF-01 16 88498680 88498680 C T ZNF469 Missense_Mutation p.T1573I 0.37 benign(0.135) TCGA-QQ-A8VF-01 16 88801449 88801449 G A PIEZO1 Missense_Mutation p.T561M 0.73 tolerated(0.13) benign(0.033) TCGA-QQ-A8VF-01 16 8890300 8890300 C T TMEM186 Missense_Mutation p.A51T 0.86 tolerated(0.67) benign(0.001) TCGA-QQ-A8VF-01 16 89261438 89261438 G A CDH15 Missense_Mutation p.A774T 0.85 tolerated(0.1) benign(0.028) TCGA-QQ-A8VF-01 16 89345632 89345632 C T ANKRD11 Missense_Mutation p.E2440K 0.88 probably_damaging(0.995) TCGA-QQ-A8VF-01 16 9004626 9004626 G A USP7 Silent p.Y379Y 0.77 TCGA-QQ-A8VF-01 16 9857765 9857765 C T GRIN2A Silent p.T1212T 0.88 TCGA-QQ-A8VF-01 17 15441316 15441317 AA - TVP23C Intron 0.29 TCGA-QQ-A8VF-01 17 16285785 16285785 C - UBB Frame_Shift_Del p.D191Tfs*35 0.43 TCGA-QQ-A8VF-01 17 17698335 17698335 C T RAI1 Silent p.S691S 0.84 TCGA-QQ-A8VF-01 17 17723594 17723594 C T SREBF1 Silent p.P141P 0.84 TCGA-QQ-A8VF-01 17 18157925 18157925 C T FLII Missense_Mutation p.R162H 0.81 tolerated(0.06) benign(0.003) TCGA-QQ-A8VF-01 17 2287776 2287776 C - MNT 3'UTR 0.24 TCGA-QQ-A8VF-01 17 26370069 26370069 C T NLK Missense_Mutation p.S57L 0.80 tolerated_low_confidence(0.35) benign(0.025) TCGA-QQ-A8VF-01 17 26684465 26684465 G T POLDIP2 Silent p.A3A 0.67 TCGA-QQ-A8VF-01 17 27211283 27211283 G A FLOT2 Missense_Mutation p.T61M 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 17 27286181 27286181 G A SEZ6 Missense_Mutation p.R657W 0.72 deleterious(0) probably_damaging(0.985) TCGA-QQ-A8VF-01 17 27493495 27493495 G A MYO18A Missense_Mutation p.T155M 0.74 deleterious_low_confidence(0) possibly_damaging(0.886) TCGA-QQ-A8VF-01 17 27878885 27878885 A - TAOK1 3'UTR 0.63 TCGA-QQ-A8VF-01 17 29219731 29219731 C T ATAD5 Silent p.D1455D 0.82 TCGA-QQ-A8VF-01 17 29553478 29553478 C - NF1 Frame_Shift_Del p.P678Rfs*10 0.44 TCGA-QQ-A8VF-01 17 29704246 29704246 A - NF1 3'UTR 0.45 TCGA-QQ-A8VF-01 17 31318973 31318973 G A SPACA3 Missense_Mutation p.R6Q 0.31 tolerated_low_confidence(0.36) benign(0) TCGA-QQ-A8VF-01 17 36091625 36091625 G - HNF1B Frame_Shift_Del p.H336Tfs*40 0.51 TCGA-QQ-A8VF-01 17 36633909 36633909 C T ARHGAP23 Silent p.P736P 0.82 TCGA-QQ-A8VF-01 17 37074861 37074861 C T LASP1 Missense_Mutation p.R206W 0.75 deleterious(0.01) probably_damaging(0.992) TCGA-QQ-A8VF-01 17 3715793 3715793 C T C17orf85 3'UTR 0.61 TCGA-QQ-A8VF-01 17 37367883 37367883 C T STAC2 3'UTR 0.32 TCGA-QQ-A8VF-01 17 40176040 40176040 G A NKIRAS2 3'UTR 0.50 TCGA-QQ-A8VF-01 17 40267765 40267765 G A KAT2A Silent p.Y617Y 0.73 TCGA-QQ-A8VF-01 17 40353751 40353751 C T STAT5B 3'UTR 0.86 TCGA-QQ-A8VF-01 17 41103840 41103840 C T AARSD1 Silent p.A360A 0.79 TCGA-QQ-A8VF-01 17 43333096 43333096 C T SPATA32 Silent p.A151A 0.93 TCGA-QQ-A8VF-01 17 44102548 44102549 TT - MAPT 3'UTR 0.68 TCGA-QQ-A8VF-01 17 44834752 44834753 - T NSF 3'UTR 0.22 TCGA-QQ-A8VF-01 17 45384962 45384962 G A ITGB3 Missense_Mutation p.A754T 0.68 deleterious(0) probably_damaging(0.941) TCGA-QQ-A8VF-01 17 4539075 4539075 C T ALOX15 Silent p.P380P 0.85 TCGA-QQ-A8VF-01 17 46128077 46128077 A - NFE2L1 5'UTR 0.63 TCGA-QQ-A8VF-01 17 46128553 46128553 C T NFE2L1 Missense_Mutation p.R25W 0.44 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 17 46128724 46128724 C T NFE2L1 Missense_Mutation p.R82W 0.90 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 17 4686271 4686271 G A TM4SF5 Missense_Mutation p.C173Y 0.82 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 17 4781662 4781662 C T MINK1 Silent p.Y36Y 0.81 TCGA-QQ-A8VF-01 17 48462638 48462638 G A LRRC59 Missense_Mutation p.R173C 0.27 deleterious(0) possibly_damaging(0.474) TCGA-QQ-A8VF-01 17 5393184 5393186 TAT - MIS12 3'UTR 0.52 TCGA-QQ-A8VF-01 17 5463350 5463353 TCTT - NLRP1 Frame_Shift_Del p.E225Nfs*13 0.93 TCGA-QQ-A8VF-01 17 58529295 58529295 C T APPBP2 Missense_Mutation p.D484N 0.84 tolerated(0.44) possibly_damaging(0.894) TCGA-QQ-A8VF-01 17 60782731 60782731 G A MARCH10 Intron 0.85 TCGA-QQ-A8VF-01 17 61564406 61564406 G A ACE Silent p.P759P 0.81 TCGA-QQ-A8VF-01 17 61894304 61894304 C T DDX42 Missense_Mutation p.T697M 0.81 deleterious(0) possibly_damaging(0.557) TCGA-QQ-A8VF-01 17 6606377 6606377 G T SLC13A5 Missense_Mutation p.L210M 0.61 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VF-01 17 7077056 7077056 G A ASGR1 Silent p.D266D 0.78 TCGA-QQ-A8VF-01 17 71387600 71387600 C T SDK2 Missense_Mutation p.A1326T 0.14 tolerated(0.08) benign(0.018) TCGA-QQ-A8VF-01 17 7257695 7257695 C T KCTD11 3'UTR 0.91 TCGA-QQ-A8VF-01 17 72832363 72832363 C T TMEM104 Missense_Mutation p.A343V 0.84 tolerated(0.32) benign(0.017) TCGA-QQ-A8VF-01 17 73059134 73059134 C T KCTD2 Missense_Mutation p.R262W 0.73 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VF-01 17 73733483 73733483 G A ITGB4 Missense_Mutation p.A691T 0.78 tolerated(0.68) benign(0.009) TCGA-QQ-A8VF-01 17 73812948 73812948 G A UNK Silent p.S353S 0.39 TCGA-QQ-A8VF-01 17 7405959 7405959 G A POLR2A Missense_Mutation p.E899K 0.74 possibly_damaging(0.584) TCGA-QQ-A8VF-01 17 74475023 74475023 C T RHBDF2 Silent p.P208P 0.79 TCGA-QQ-A8VF-01 17 74868795 74868796 - C MGAT5B 5'UTR 0.23 TCGA-QQ-A8VF-01 17 7579321 7579322 CA - TP53 Frame_Shift_Del p.V122Dfs*26 0.45 TCGA-QQ-A8VF-01 17 76522985 76522985 G A DNAH17 Missense_Mutation p.R1201W 0.09 probably_damaging(0.923) TCGA-QQ-A8VF-01 17 7754480 7754480 G A KDM6B Missense_Mutation p.R1272H 0.12 probably_damaging(0.991) TCGA-QQ-A8VF-01 17 79140499 79140499 C - AATK 5'Flank 0.48 TCGA-QQ-A8VF-01 17 79425672 79425672 C T RP11-1055B8.7 Missense_Mutation p.T1790M 0.35 possibly_damaging(0.855) TCGA-QQ-A8VF-01 17 79495565 79495565 C T FSCN2 Missense_Mutation p.T3M 0.74 deleterious(0) possibly_damaging(0.879) TCGA-QQ-A8VF-01 17 80559429 80559429 C T FOXK2 3'UTR 0.85 TCGA-QQ-A8VF-01 17 8218831 8218832 - C ARHGEF15 Frame_Shift_Ins p.R456Pfs*2 0.44 TCGA-QQ-A8VF-01 17 8790893 8790893 G - PIK3R5 Frame_Shift_Del p.P575Lfs*64 0.09 TCGA-QQ-A8VF-01 18 10689659 10689659 C A PIEZO2 Silent p.S2384S 0.18 TCGA-QQ-A8VF-01 18 11852450 11852452 TTA - CHMP1B 3'UTR 0.77 TCGA-QQ-A8VF-01 18 13048889 13048889 G T CEP192 Missense_Mutation p.R700I 0.27 deleterious(0.02) benign(0.197) TCGA-QQ-A8VF-01 18 14478217 14478217 C T CXADRP3 RNA 0.21 TCGA-QQ-A8VF-01 18 21395486 21395486 T C LAMA3 Missense_Mutation p.C666R 0.68 probably_damaging(1) TCGA-QQ-A8VF-01 18 2750465 2750465 T C SMCHD1 Silent p.Y1375Y 0.05 TCGA-QQ-A8VF-01 18 28584253 28584253 G A DSC3 Silent p.A656A 0.76 TCGA-QQ-A8VF-01 18 28654762 28654762 G A DSC2 Missense_Mutation p.A592V 0.32 tolerated(0.19) benign(0.094) TCGA-QQ-A8VF-01 18 2920413 2920413 C T LPIN2 Missense_Mutation p.V857M 0.39 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 18 29437543 29437543 A C TRAPPC8 Missense_Mutation p.L1050V 0.32 deleterious(0) probably_damaging(0.986) TCGA-QQ-A8VF-01 18 34298308 34298308 G T FHOD3 Missense_Mutation p.R841M 0.26 tolerated(0.24) possibly_damaging(0.652) TCGA-QQ-A8VF-01 18 43430744 43430744 A G EPG5 3'UTR 0.70 TCGA-QQ-A8VF-01 18 67993143 67993143 C T SOCS6 Silent p.D413D 0.85 TCGA-QQ-A8VF-01 18 67993794 67993795 - C SOCS6 3'UTR 0.59 TCGA-QQ-A8VF-01 18 77475022 77475022 C T CTDP1 Missense_Mutation p.A521V 0.32 tolerated(0.49) benign(0.001) TCGA-QQ-A8VF-01 19 10096556 10096556 G A COL5A3 Missense_Mutation p.P790S 0.33 unknown(0) TCGA-QQ-A8VF-01 19 10246944 10246944 G A DNMT1 Silent p.P1503P 0.35 TCGA-QQ-A8VF-01 19 10419780 10419780 A G ZGLP1 5'UTR 0.50 TCGA-QQ-A8VF-01 19 10461519 10461519 G A TYK2 Silent p.S1185S 0.41 TCGA-QQ-A8VF-01 19 10475394 10475394 G A TYK2 Silent p.D421D 0.37 TCGA-QQ-A8VF-01 19 10602859 10602859 C T KEAP1 Missense_Mutation p.R240H 0.45 tolerated(0.17) possibly_damaging(0.742) TCGA-QQ-A8VF-01 19 10683603 10683603 G A AP1M2 3'UTR 0.52 TCGA-QQ-A8VF-01 19 11471938 11471938 C T DKFZP761J1410 Missense_Mutation p.A121V 0.38 tolerated(0.38) probably_damaging(0.949) TCGA-QQ-A8VF-01 19 11526714 11526714 G A RGL3 Missense_Mutation p.A179V 0.51 tolerated(0.2) possibly_damaging(0.874) TCGA-QQ-A8VF-01 19 11564766 11564767 - C ELAVL3 3'UTR 0.20 TCGA-QQ-A8VF-01 19 11664020 11664020 C T ELOF1 3'UTR 0.44 TCGA-QQ-A8VF-01 19 11687605 11687605 G A ACP5 Silent p.Y105Y 0.35 TCGA-QQ-A8VF-01 19 11918238 11918238 C T ZNF491 3'UTR 0.36 TCGA-QQ-A8VF-01 19 1257097 1257097 C T MIDN Silent p.D411D 0.29 TCGA-QQ-A8VF-01 19 12777534 12777535 - G MAN2B1 5'UTR 0.29 TCGA-QQ-A8VF-01 19 12800577 12800577 G A FBXW9 Missense_Mutation p.R382W 0.46 deleterious(0) probably_damaging(0.971) TCGA-QQ-A8VF-01 19 12951276 12951276 C T MAST1 Missense_Mutation p.R34W 0.29 deleterious(0) probably_damaging(0.994) TCGA-QQ-A8VF-01 19 12962784 12962784 G A MAST1 Missense_Mutation p.V271I 0.44 tolerated(0.99) benign(0.029) TCGA-QQ-A8VF-01 19 1358610 1358612 AGG - MUM1 Intron 0.38 TCGA-QQ-A8VF-01 19 14043852 14043852 C T PODNL1 Missense_Mutation p.R402Q 0.31 tolerated(0.41) benign(0.234) TCGA-QQ-A8VF-01 19 14070110 14070110 G A DCAF15 Silent p.L346L 0.27 TCGA-QQ-A8VF-01 19 14199587 14199587 G A SAMD1 Missense_Mutation p.R346C 0.41 deleterious(0) probably_damaging(0.95) TCGA-QQ-A8VF-01 19 14582448 14582448 C T PKN1 Missense_Mutation p.T900M 0.17 deleterious(0.01) possibly_damaging(0.649) TCGA-QQ-A8VF-01 19 14883272 14883272 G A EMR2 Silent p.C79C 0.24 TCGA-QQ-A8VF-01 19 1526508 1526508 G A PLK5 5'UTR 0.25 TCGA-QQ-A8VF-01 19 15272350 15272350 G T NOTCH3 Missense_Mutation p.P2030H 0.37 deleterious(0.01) possibly_damaging(0.847) TCGA-QQ-A8VF-01 19 15367925 15367925 G A BRD4 Silent p.A467A 0.41 TCGA-QQ-A8VF-01 19 15376248 15376248 G - BRD4 Frame_Shift_Del p.Q256Sfs*27 0.46 TCGA-QQ-A8VF-01 19 15989601 15989601 G A CYP4F2 Missense_Mutation p.R515W 0.34 tolerated(0.06) benign(0.173) TCGA-QQ-A8VF-01 19 16024596 16024596 G A CYP4F11 Silent p.R507R 0.31 TCGA-QQ-A8VF-01 19 16136335 16136335 C T LINC00661 RNA 0.38 TCGA-QQ-A8VF-01 19 16344396 16344396 C T AP1M1 Silent p.F392F 0.40 TCGA-QQ-A8VF-01 19 16646343 16646343 C T CHERP Missense_Mutation p.A102T 0.46 tolerated(0.65) benign(0.006) TCGA-QQ-A8VF-01 19 17838610 17838610 C T MAP1S Missense_Mutation p.A806V 0.24 tolerated(0.31) benign(0.055) TCGA-QQ-A8VF-01 19 18254627 18254627 C T MAST3 Silent p.P769P 0.32 TCGA-QQ-A8VF-01 19 18257709 18257709 C A MAST3 Missense_Mutation p.L1032M 0.43 deleterious(0.02) probably_damaging(0.988) TCGA-QQ-A8VF-01 19 18307207 18307207 C A MPV17L2 3'UTR 0.34 TCGA-QQ-A8VF-01 19 19407887 19407887 C A SUGP1 Missense_Mutation p.S385I 0.06 deleterious(0.01) possibly_damaging(0.86) TCGA-QQ-A8VF-01 19 19654989 19654989 C T CILP2 Silent p.A545A 0.33 TCGA-QQ-A8VF-01 19 19655894 19655894 C T CILP2 Missense_Mutation p.T847M 0.42 deleterious(0) probably_damaging(0.929) TCGA-QQ-A8VF-01 19 19917815 19917815 G A ZNF506 Silent p.D22D 0.33 TCGA-QQ-A8VF-01 19 2110759 2110759 G A AP3D1 Missense_Mutation p.P1041L 0.35 tolerated(0.1) benign(0.008) TCGA-QQ-A8VF-01 19 21512161 21512168 GGCCGCGC - ZNF708 5'UTR 0.27 TCGA-QQ-A8VF-01 19 24289351 24289351 T C ZNF254 Silent p.G53G 0.51 TCGA-QQ-A8VF-01 19 2430753 2430753 G A LMNB2 3'UTR 0.36 TCGA-QQ-A8VF-01 19 2434400 2434400 G A LMNB2 Silent p.D365D 0.49 TCGA-QQ-A8VF-01 19 33167142 33167142 C T ANKRD27 5'Flank 0.42 TCGA-QQ-A8VF-01 19 33246961 33246961 A - TDRD12 Frame_Shift_Del p.N217Tfs*5 0.29 TCGA-QQ-A8VF-01 19 33294040 33294040 T - TDRD12 Frame_Shift_Del p.C850Afs*36 0.28 TCGA-QQ-A8VF-01 19 33490504 33490504 G A RHPN2 Missense_Mutation p.R405C 0.40 deleterious(0.01) possibly_damaging(0.466) TCGA-QQ-A8VF-01 19 33871416 33871416 T - CEBPG 3'UTR 0.14 TCGA-QQ-A8VF-01 19 34845120 34845121 - T KIAA0355 3'UTR 0.72 TCGA-QQ-A8VF-01 19 35504178 35504178 C A GRAMD1A Missense_Mutation p.L209I 0.47 deleterious(0.01) possibly_damaging(0.744) TCGA-QQ-A8VF-01 19 3578731 3578731 C T HMG20B 3'UTR 0.49 TCGA-QQ-A8VF-01 19 36043994 36043994 G A ATP4A Missense_Mutation p.A899V 0.16 tolerated(0.33) benign(0.118) TCGA-QQ-A8VF-01 19 36212415 36212415 C T KMT2B Silent p.H722H 0.05 TCGA-QQ-A8VF-01 19 36278096 36278096 C - ARHGAP33 Frame_Shift_Del p.P717Lfs*79 0.27 TCGA-QQ-A8VF-01 19 3630381 3630381 G A PIP5K1C 3'UTR 0.41 TCGA-QQ-A8VF-01 19 36611695 36611695 C T TBCB Silent p.Y114Y 0.31 TCGA-QQ-A8VF-01 19 37203364 37203365 CT - ZNF567 5'UTR 0.35 TCGA-QQ-A8VF-01 19 37252567 37252567 G A ZNF850 Silent p.D71D 0.22 TCGA-QQ-A8VF-01 19 37677177 37677177 C T ZNF585B Missense_Mutation p.R421Q 0.39 tolerated(1) benign(0) TCGA-QQ-A8VF-01 19 38755638 38755638 G A SPINT2 Missense_Mutation p.D36N 0.07 deleterious(0.01) possibly_damaging(0.663) TCGA-QQ-A8VF-01 19 38877316 38877316 C T GGN Missense_Mutation p.A196T 0.25 tolerated_low_confidence(0.25) unknown(0) TCGA-QQ-A8VF-01 19 38948884 38948884 G A RYR1 Missense_Mutation p.G707S 0.33 probably_damaging(0.999) TCGA-QQ-A8VF-01 19 39200915 39200915 G A ACTN4 Missense_Mutation p.R251Q 0.26 tolerated(0.09) probably_damaging(0.99) TCGA-QQ-A8VF-01 19 39899575 39899575 A - ZFP36 3'UTR 0.11 TCGA-QQ-A8VF-01 19 40366244 40366244 C T FCGBP Missense_Mutation p.G4664S 0.21 probably_damaging(0.947) TCGA-QQ-A8VF-01 19 40420155 40420155 C T FCGBP Missense_Mutation p.V947I 0.18 benign(0.187) TCGA-QQ-A8VF-01 19 41009840 41009840 C T SPTBN4 Missense_Mutation p.A489V 0.26 tolerated(1) possibly_damaging(0.557) TCGA-QQ-A8VF-01 19 41021259 41021259 G A SPTBN4 Missense_Mutation p.R936H 0.24 deleterious(0) probably_damaging(0.986) TCGA-QQ-A8VF-01 19 41111556 41111556 G A LTBP4 Missense_Mutation p.E297K 0.25 tolerated(0.11) benign(0.407) TCGA-QQ-A8VF-01 19 41172653 41172653 A - NUMBL 3'UTR 0.23 TCGA-QQ-A8VF-01 19 41173208 41173208 G A NUMBL 3'UTR 0.18 TCGA-QQ-A8VF-01 19 41307183 41307183 C T EGLN2 Missense_Mutation p.R236C 0.18 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 19 41712432 41712432 G A CYP2S1 3'UTR 0.31 TCGA-QQ-A8VF-01 19 41727072 41727072 C T AXL Silent p.S110S 0.18 TCGA-QQ-A8VF-01 19 42133394 42133394 A C CEACAM4 5'UTR 0.32 TCGA-QQ-A8VF-01 19 43708389 43708389 A C PSG4 Missense_Mutation p.F27V 0.13 deleterious(0) benign(0.091) TCGA-QQ-A8VF-01 19 44131826 44131826 G A CADM4 Missense_Mutation p.R61W 0.57 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 19 44171745 44171745 G A PLAUR Missense_Mutation p.R52C 0.41 deleterious(0) possibly_damaging(0.876) TCGA-QQ-A8VF-01 19 44271058 44271059 - A KCNN4 3'UTR 0.29 TCGA-QQ-A8VF-01 19 4488730 4488730 G A HDGFRP2 Missense_Mutation p.A116T 0.43 tolerated(0.08) possibly_damaging(0.695) TCGA-QQ-A8VF-01 19 4497984 4497984 G A HDGFRP2 Missense_Mutation p.R453Q 0.42 deleterious(0.03) unknown(0) TCGA-QQ-A8VF-01 19 4552557 4552557 C A SEMA6B Missense_Mutation p.R289L 0.35 deleterious(0) possibly_damaging(0.816) TCGA-QQ-A8VF-01 19 45567686 45567686 C T CLASRP Missense_Mutation p.R403C 0.19 tolerated_low_confidence(0.19) unknown(0) TCGA-QQ-A8VF-01 19 45805845 45805845 C T MARK4 Silent p.F712F 0.56 TCGA-QQ-A8VF-01 19 45998141 45998141 C T RTN2 Missense_Mutation p.A68T 0.21 tolerated_low_confidence(0.16) probably_damaging(0.932) TCGA-QQ-A8VF-01 19 46313960 46313960 G A RSPH6A Silent p.P263P 0.72 TCGA-QQ-A8VF-01 19 46329628 46329628 G A SYMPK Missense_Mutation p.R729C 0.34 deleterious(0) probably_damaging(0.983) TCGA-QQ-A8VF-01 19 47278967 47278967 C T SLC1A5 Missense_Mutation p.A476T 0.56 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 19 47548539 47548539 G A NPAS1 Missense_Mutation p.G468D 0.14 tolerated(0.22) benign(0.005) TCGA-QQ-A8VF-01 19 48024744 48024745 CT - ZNF541 Frame_Shift_Del p.E1312Vfs*2 0.31 TCGA-QQ-A8VF-01 19 48205666 48205666 C A GLTSCR1 Silent p.T1559T 0.36 TCGA-QQ-A8VF-01 19 48685819 48685819 C T C19orf68 Missense_Mutation p.P128L 0.38 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VF-01 19 49254245 49254245 C T FUT1 Silent p.T98T 0.16 TCGA-QQ-A8VF-01 19 49298364 49298365 - A BCAT2 3'UTR 0.17 TCGA-QQ-A8VF-01 19 4930820 4930820 C T MIR4747 5'Flank 0.48 TCGA-QQ-A8VF-01 19 49632653 49632653 G A PPFIA3 Missense_Mutation p.R175Q 0.22 deleterious(0) probably_damaging(0.951) TCGA-QQ-A8VF-01 19 49671180 49671180 C T TRPM4 Missense_Mutation p.R92W 0.48 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VF-01 19 50158042 50158042 C - SCAF1 Frame_Shift_Del p.T1181Pfs*28 0.42 TCGA-QQ-A8VF-01 19 50369690 50369690 G A PNKP Missense_Mutation p.A55V 0.65 deleterious(0.02) possibly_damaging(0.639) TCGA-QQ-A8VF-01 19 50864365 50864365 G A NAPSA Silent p.F167F 0.59 TCGA-QQ-A8VF-01 19 50883061 50883061 C T NR1H2 Missense_Mutation p.R318C 0.89 deleterious(0.01) possibly_damaging(0.845) TCGA-QQ-A8VF-01 19 50919051 50919051 G A POLD1 Missense_Mutation p.A930T 0.11 tolerated(0.12) benign(0.027) TCGA-QQ-A8VF-01 19 51530788 51530788 C T KLK11 5'UTR 0.59 TCGA-QQ-A8VF-01 19 51628204 51628204 C T SIGLEC9 5'UTR 0.56 TCGA-QQ-A8VF-01 19 5229538 5229538 C T PTPRS Silent p.P771P 0.59 TCGA-QQ-A8VF-01 19 53116388 53116388 G A ZNF83 Missense_Mutation p.A477V 0.56 tolerated(0.13) benign(0.001) TCGA-QQ-A8VF-01 19 53311366 53311366 G A ZNF28 Silent p.D12D 0.54 TCGA-QQ-A8VF-01 19 53572561 53572561 C T ZNF160 Missense_Mutation p.R409H 0.56 tolerated(0.31) probably_damaging(0.934) TCGA-QQ-A8VF-01 19 54466317 54466318 - C CACNG8 5'UTR 0.36 TCGA-QQ-A8VF-01 19 54617836 54617836 G A TFPT Missense_Mutation p.R90W 0.21 deleterious(0) probably_damaging(0.911) TCGA-QQ-A8VF-01 19 54656321 54656321 C T CNOT3 Missense_Mutation p.A621V 0.24 tolerated(0.08) possibly_damaging(0.787) TCGA-QQ-A8VF-01 19 54779850 54779850 G A LILRB2 Silent p.A535A 0.49 TCGA-QQ-A8VF-01 19 55106574 55106574 T G LILRA1 Missense_Mutation p.I123S 0.04 tolerated(1) benign(0.001) TCGA-QQ-A8VF-01 19 55221976 55221976 G A AC098784.2 3'Flank 0.28 TCGA-QQ-A8VF-01 19 55602837 55602837 G A PPP1R12C 3'UTR 0.57 TCGA-QQ-A8VF-01 19 55915712 55915712 C T UBE2S Missense_Mutation p.V96I 0.58 deleterious(0) probably_damaging(0.973) TCGA-QQ-A8VF-01 19 55992905 55992905 C T ZNF628 Silent p.T115T 0.26 TCGA-QQ-A8VF-01 19 56185490 56185490 C - U2AF2 3'UTR 0.24 TCGA-QQ-A8VF-01 19 5667092 5667092 C T SAFB Silent p.H790H 0.24 TCGA-QQ-A8VF-01 19 5679654 5679654 G - C19orf70 Frame_Shift_Del p.A51Pfs*39 0.29 TCGA-QQ-A8VF-01 19 5694805 5694805 G A LONP1 Silent p.S707S 0.41 TCGA-QQ-A8VF-01 19 57176059 57176059 C A ZNF835 Nonsense_Mutation p.E170* 0.86 TCGA-QQ-A8VF-01 19 57802998 57802998 C A ZNF460 Silent p.P363P 0.50 TCGA-QQ-A8VF-01 19 5783949 5783949 C - PRR22 Frame_Shift_Del p.P104Qfs*73 0.38 TCGA-QQ-A8VF-01 19 57905591 57905591 G A ZNF548 Silent p.Q17Q 0.54 TCGA-QQ-A8VF-01 19 5832215 5832215 G A FUT6 Missense_Mutation p.R122C 0.18 deleterious(0.03) possibly_damaging(0.717) TCGA-QQ-A8VF-01 19 58361288 58361288 T G ZNF587 5'UTR 0.11 TCGA-QQ-A8VF-01 19 58823634 58823634 C T ERVK3-1 RNA 0.21 TCGA-QQ-A8VF-01 19 59021237 59021237 C A SLC27A5 Missense_Mutation p.G345V 0.07 deleterious(0) probably_damaging(0.976) TCGA-QQ-A8VF-01 19 59065557 59065557 C T CHMP2A Missense_Mutation p.R8Q 0.27 tolerated(0.11) benign(0.062) TCGA-QQ-A8VF-01 19 5918522 5918522 C A RANBP3 Missense_Mutation p.K486N 0.44 deleterious(0.02) probably_damaging(1) TCGA-QQ-A8VF-01 19 6418761 6418762 - T KHSRP Frame_Shift_Ins p.A245Gfs*13 0.35 TCGA-QQ-A8VF-01 19 6534792 6534792 C T TNFSF9 Silent p.S160S 0.17 TCGA-QQ-A8VF-01 19 7083730 7083730 C T ZNF557 Missense_Mutation p.T423M 0.20 tolerated(0.07) benign(0.001) TCGA-QQ-A8VF-01 19 7689199 7689199 G A XAB2 Missense_Mutation p.R319C 0.53 deleterious(0.05) benign(0.416) TCGA-QQ-A8VF-01 19 7830571 7830571 G A CLEC4M Missense_Mutation p.A88T 0.34 tolerated(0.31) benign(0.005) TCGA-QQ-A8VF-01 19 7974653 7974653 G A MAP2K7 Silent p.P46P 0.35 TCGA-QQ-A8VF-01 19 8027121 8027124 AAAG - ELAVL1 3'UTR 0.28 TCGA-QQ-A8VF-01 19 8130981 8130981 C T FBN3 Missense_Mutation p.R2751H 0.75 tolerated(0.07) benign(0.075) TCGA-QQ-A8VF-01 19 8503622 8503622 T G MARCH2 3'UTR 0.50 TCGA-QQ-A8VF-01 19 8586061 8586061 C - MYO1F 3'UTR 0.26 TCGA-QQ-A8VF-01 19 8807957 8807957 C A ACTL9 Missense_Mutation p.E365D 0.40 tolerated(1) benign(0.009) TCGA-QQ-A8VF-01 19 9000513 9000513 G A MUC16 Missense_Mutation p.R13491W 0.09 probably_damaging(0.973) TCGA-QQ-A8VF-01 19 9435303 9435306 CCCA - ZNF559 5'UTR 0.35 TCGA-QQ-A8VF-01 19 9524421 9524421 G A ZNF266 Missense_Mutation p.R394C 0.25 tolerated(0.18) benign(0.151) TCGA-QQ-A8VF-01 19 964310 964310 G A ARID3A Missense_Mutation p.V277M 0.32 tolerated(0.05) benign(0.236) TCGA-QQ-A8VF-01 1 1019507 1019507 G - C1orf159 Intron 0.42 TCGA-QQ-A8VF-01 1 108023411 108023411 G A NTNG1 Silent p.A523A 0.78 TCGA-QQ-A8VF-01 1 109299390 109299390 T C STXBP3 Splice_Site p.X86_splice 0.78 TCGA-QQ-A8VF-01 1 112255710 112255710 G T RAP1A 3'UTR 0.26 TCGA-QQ-A8VF-01 1 113197172 113197172 G A CAPZA1 Missense_Mutation p.R102Q 0.29 tolerated(0.07) benign(0.22) TCGA-QQ-A8VF-01 1 113236676 113236676 C T MOV10 Missense_Mutation p.R393W 0.85 deleterious(0) possibly_damaging(0.872) TCGA-QQ-A8VF-01 1 113616195 113616195 G A LRIG2 Missense_Mutation p.C56Y 0.39 deleterious(0) probably_damaging(0.972) TCGA-QQ-A8VF-01 1 114938784 114938785 TT - TRIM33 3'UTR 0.47 TCGA-QQ-A8VF-01 1 115259895 115259895 A - CSDE1 3'UTR 0.70 TCGA-QQ-A8VF-01 1 11576187 11576187 C T PTCHD2 Missense_Mutation p.A573V 0.16 tolerated(0.06) probably_damaging(0.999) TCGA-QQ-A8VF-01 1 11734778 11734778 G A MAD2L2 3'UTR 0.78 TCGA-QQ-A8VF-01 1 117620653 117620653 C T TTF2 Silent p.P563P 0.78 TCGA-QQ-A8VF-01 1 1192661 1192662 - A UBE2J2 Frame_Shift_Ins p.P84Sfs*21 0.19 TCGA-QQ-A8VF-01 1 120437013 120437014 - T ADAM30 Frame_Shift_Ins p.N649Kfs*14 0.27 TCGA-QQ-A8VF-01 1 150445303 150445303 C T RPRD2 Silent p.P1293P 0.07 TCGA-QQ-A8VF-01 1 151252563 151252563 C T RP11-126K1.2 3'UTR 0.79 TCGA-QQ-A8VF-01 1 151491626 151491626 C T CGN Missense_Mutation p.R211W 0.76 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 1 151678352 151678352 C T CELF3 Missense_Mutation p.V406I 0.79 tolerated(0.17) probably_damaging(0.997) TCGA-QQ-A8VF-01 1 151679702 151679702 C T CELF3 Missense_Mutation p.G281S 0.59 tolerated(0.13) benign(0.138) TCGA-QQ-A8VF-01 1 152193268 152193268 C T HRNR Silent p.S279S 0.79 TCGA-QQ-A8VF-01 1 154309900 154309900 G A ATP8B2 Missense_Mutation p.R338H 0.72 tolerated(0.53) benign(0.259) TCGA-QQ-A8VF-01 1 156107559 156107559 C T LMNA Intron 0.17 TCGA-QQ-A8VF-01 1 156503912 156503912 G A IQGAP3 Silent p.C1254C 0.32 TCGA-QQ-A8VF-01 1 158812101 158812101 A - MNDA Frame_Shift_Del p.K55Sfs*8 0.24 TCGA-QQ-A8VF-01 1 159807772 159807772 G A C1orf204 Missense_Mutation p.T215M 0.20 deleterious_low_confidence(0) possibly_damaging(0.897) TCGA-QQ-A8VF-01 1 160968866 160968866 C A F11R Missense_Mutation p.K277N 0.28 tolerated(0.09) benign(0.347) TCGA-QQ-A8VF-01 1 161145720 161145720 G A B4GALT3 Missense_Mutation p.P44L 0.89 deleterious(0.01) possibly_damaging(0.57) TCGA-QQ-A8VF-01 1 166818283 166818283 G A POGK Missense_Mutation p.R156Q 0.77 tolerated_low_confidence(0.37) benign(0) TCGA-QQ-A8VF-01 1 1688162 1688163 - C NADK Intron 0.30 TCGA-QQ-A8VF-01 1 171300852 171300852 C T FMO4 Silent p.R186R 0.85 TCGA-QQ-A8VF-01 1 175049543 175049543 G A TNN Silent p.Q343Q 0.75 TCGA-QQ-A8VF-01 1 179834828 179834828 C T TOR1AIP2 Intron 0.41 TCGA-QQ-A8VF-01 1 180022276 180022276 A - CEP350 Frame_Shift_Del p.T1657Lfs*9 0.38 TCGA-QQ-A8VF-01 1 18808308 18808308 C T KLHDC7A Missense_Mutation p.A278V 0.81 tolerated(0.32) benign(0) TCGA-QQ-A8VF-01 1 18808760 18808760 C T KLHDC7A Missense_Mutation p.R429C 0.90 tolerated(0.08) benign(0.005) TCGA-QQ-A8VF-01 1 19655220 19655220 C T PQLC2 3'UTR 0.79 TCGA-QQ-A8VF-01 1 203710444 203710444 T - ATP2B4 3'UTR 0.17 TCGA-QQ-A8VF-01 1 204373613 204373613 A - PPP1R15B 3'UTR 0.79 TCGA-QQ-A8VF-01 1 204401521 204401524 TCAA - PIK3C2B Frame_Shift_Del p.I1320Sfs*7 0.86 TCGA-QQ-A8VF-01 1 204587273 204587274 TT - LRRN2 Frame_Shift_Del p.K616Rfs*172 0.66 TCGA-QQ-A8VF-01 1 205031691 205031691 G A CNTN2 Missense_Mutation p.V412M 0.80 deleterious(0) probably_damaging(0.967) TCGA-QQ-A8VF-01 1 20517512 20517512 C T UBXN10 Missense_Mutation p.T153M 0.09 tolerated(0.11) benign(0.017) TCGA-QQ-A8VF-01 1 20645886 20645886 C T VWA5B1 Missense_Mutation p.P285S 0.78 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 1 207241616 207241616 C T PFKFB2 Missense_Mutation p.P317S 0.85 benign(0.007) TCGA-QQ-A8VF-01 1 215799102 215799102 C T USH2A 3'UTR 0.79 TCGA-QQ-A8VF-01 1 215824117 215824117 T - USH2A Frame_Shift_Del p.A4721Pfs*25 0.27 TCGA-QQ-A8VF-01 1 215953238 215953238 C A USH2A Missense_Mutation p.G3629V 0.26 probably_damaging(0.991) TCGA-QQ-A8VF-01 1 216074162 216074162 G A USH2A Silent p.N2462N 0.76 TCGA-QQ-A8VF-01 1 21938046 21938046 C T RAP1GAP Missense_Mutation p.G312R 0.86 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 1 220327382 220327383 - A RAB3GAP2 Frame_Shift_Ins p.K1192Qfs*11 0.13 TCGA-QQ-A8VF-01 1 224001956 224001956 G - TP53BP2 Frame_Shift_Del p.P92Lfs*6 0.25 TCGA-QQ-A8VF-01 1 228210541 228210541 G A WNT3A Missense_Mutation p.R82H 0.73 tolerated(0.06) probably_damaging(0.987) TCGA-QQ-A8VF-01 1 228582620 228582620 C T TRIM11 Missense_Mutation p.R398Q 0.21 tolerated(0.17) benign(0.045) TCGA-QQ-A8VF-01 1 234444978 234444978 C T SLC35F3 Missense_Mutation p.T247M 0.87 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 1 246954177 246954177 A G RP11-439E19.3 RNA 0.85 TCGA-QQ-A8VF-01 1 247002995 247002995 G A AHCTF1 3'UTR 0.09 TCGA-QQ-A8VF-01 1 24795580 24795580 G A NIPAL3 Missense_Mutation p.A376T 0.86 tolerated_low_confidence(0.73) benign(0.006) TCGA-QQ-A8VF-01 1 248085014 248085014 G A OR2T8 Missense_Mutation p.R232H 0.72 tolerated(0.06) benign(0.075) TCGA-QQ-A8VF-01 1 248129200 248129200 T C OR2AK2 Silent p.I189I 0.58 TCGA-QQ-A8VF-01 1 248402351 248402352 - A OR2M4 Frame_Shift_Ins p.N42Kfs*70 0.26 TCGA-QQ-A8VF-01 1 248436422 248436422 C T OR2T33 Missense_Mutation p.R232H 0.14 tolerated(0.06) benign(0.075) TCGA-QQ-A8VF-01 1 25683337 25683337 T - TMEM50A Frame_Shift_Del p.F142Lfs*20 0.43 TCGA-QQ-A8VF-01 1 32145408 32145408 C T COL16A1 Silent p.P905P 0.89 TCGA-QQ-A8VF-01 1 32658320 32658320 C T TXLNA Silent p.H382H 0.79 TCGA-QQ-A8VF-01 1 36372556 36372556 G A AGO1 Missense_Mutation p.R473Q 0.80 tolerated(0.74) possibly_damaging(0.659) TCGA-QQ-A8VF-01 1 36564614 36564614 C - COL8A2 Frame_Shift_Del p.G223Vfs*14 0.54 TCGA-QQ-A8VF-01 1 3773928 3773928 T C DFFB 5'UTR 0.15 TCGA-QQ-A8VF-01 1 38323139 38323139 G A MTF1 Silent p.D64D 0.74 TCGA-QQ-A8VF-01 1 41236209 41236209 C A NFYC Intron 0.24 TCGA-QQ-A8VF-01 1 44442292 44442292 C T ATP6V0B Silent p.Y103Y 0.82 TCGA-QQ-A8VF-01 1 44462912 44462912 C T SLC6A9 3'Flank 0.10 TCGA-QQ-A8VF-01 1 44475756 44475756 A G SLC6A9 Missense_Mutation p.F140S 0.13 deleterious(0) possibly_damaging(0.588) TCGA-QQ-A8VF-01 1 46087969 46087969 C T CCDC17 Missense_Mutation p.R304Q 0.81 tolerated(0.71) benign(0.089) TCGA-QQ-A8VF-01 1 46685520 46685520 C T LURAP1 Silent p.G116G 0.79 TCGA-QQ-A8VF-01 1 51737403 51737403 G A RNF11 3'UTR 0.83 TCGA-QQ-A8VF-01 1 52549108 52549108 G A BTF3L4 Missense_Mutation p.A89T 0.87 tolerated(0.16) benign(0.03) TCGA-QQ-A8VF-01 1 53927309 53927309 C T DMRTB1 Silent p.G247G 0.85 TCGA-QQ-A8VF-01 1 57463784 57463784 G A DAB1 3'UTR 0.87 TCGA-QQ-A8VF-01 1 60314814 60314814 C T HOOK1 Missense_Mutation p.R401W 0.74 deleterious(0) possibly_damaging(0.851) TCGA-QQ-A8VF-01 1 62190778 62190778 C T TM2D1 Nonsense_Mutation p.W67* 0.24 TCGA-QQ-A8VF-01 1 6693058 6693058 G A THAP3 Missense_Mutation p.R214Q 0.80 tolerated(0.23) benign(0) TCGA-QQ-A8VF-01 1 76877876 76877876 G A ST6GALNAC3 Missense_Mutation p.V133I 0.82 possibly_damaging(0.876) TCGA-QQ-A8VF-01 1 77096582 77096582 T - ST6GALNAC3 3'UTR 0.20 TCGA-QQ-A8VF-01 1 78392424 78392424 A - NEXN Frame_Shift_Del p.E240Nfs*8 0.45 TCGA-QQ-A8VF-01 1 7895829 7895829 C T PER3 Silent p.S1065S 0.80 TCGA-QQ-A8VF-01 1 86048585 86048585 C T CYR61 Missense_Mutation p.R336C 0.82 deleterious(0.01) probably_damaging(0.943) TCGA-QQ-A8VF-01 1 89271776 89271776 G A PKN2 Intron 0.85 TCGA-QQ-A8VF-01 1 89662988 89662988 C A GBP4 Splice_Site p.X14_splice 0.73 TCGA-QQ-A8VF-01 1 91977476 91977476 A - CDC7 Frame_Shift_Del p.K191Sfs*5 0.10 TCGA-QQ-A8VF-01 1 93594891 93594891 G A MTF2 Missense_Mutation p.R349H 0.86 deleterious(0) probably_damaging(0.957) TCGA-QQ-A8VF-01 1 9667719 9667719 C T TMEM201 Missense_Mutation p.P422L 0.77 deleterious(0) possibly_damaging(0.859) TCGA-QQ-A8VF-01 1 978641 978641 C T AGRN Silent p.L469L 0.82 TCGA-QQ-A8VF-01 1 979279 979279 C - AGRN Frame_Shift_Del p.P627Rfs*105 0.44 TCGA-QQ-A8VF-01 20 16253083 16253083 A - KIF16B 3'UTR 0.08 TCGA-QQ-A8VF-01 20 16729119 16729119 C T OTOR Missense_Mutation p.R25C 0.25 deleterious(0) possibly_damaging(0.518) TCGA-QQ-A8VF-01 20 17640808 17640808 G - RRBP1 Frame_Shift_Del p.I116Lfs*41 0.37 TCGA-QQ-A8VF-01 20 21377856 21377856 G C NKX2-4 Missense_Mutation p.T61S 0.36 tolerated(1) benign(0) TCGA-QQ-A8VF-01 20 23065795 23065795 G A CD93 Silent p.D345D 0.33 TCGA-QQ-A8VF-01 20 30309756 30309756 G A BCL2L1 Missense_Mutation p.A89V 0.43 deleterious(0.04) possibly_damaging(0.598) TCGA-QQ-A8VF-01 20 30617620 30617620 C T CCM2L 3'UTR 0.52 TCGA-QQ-A8VF-01 20 30904626 30904626 G A KIF3B Missense_Mutation p.R566H 0.44 deleterious(0) possibly_damaging(0.848) TCGA-QQ-A8VF-01 20 31388003 31388003 G A DNMT3B Missense_Mutation p.V602I 0.41 tolerated(1) benign(0.034) TCGA-QQ-A8VF-01 20 33128586 33128586 C T DYNLRB1 3'UTR 0.33 TCGA-QQ-A8VF-01 20 33329264 33329265 AC - NCOA6 Frame_Shift_Del p.V1599Ifs*12 0.38 TCGA-QQ-A8VF-01 20 33575078 33575078 G A MYH7B Missense_Mutation p.D421N 0.58 possibly_damaging(0.729) TCGA-QQ-A8VF-01 20 34078524 34078524 A - CEP250 Frame_Shift_Del p.M885Wfs*5 0.27 TCGA-QQ-A8VF-01 20 3452086 3452086 G A ATRN Missense_Mutation p.C111Y 0.34 deleterious(0) possibly_damaging(0.805) TCGA-QQ-A8VF-01 20 34541828 34541828 G A SCAND1 Missense_Mutation p.R127W 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-QQ-A8VF-01 20 35156710 35156710 C T DLGAP4 3'UTR 0.55 TCGA-QQ-A8VF-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.37 TCGA-QQ-A8VF-01 20 36627675 36627675 A G TTI1 Missense_Mutation p.L903P 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 20 36869698 36869698 G T KIAA1755 Missense_Mutation p.L279I 0.47 deleterious(0) possibly_damaging(0.652) TCGA-QQ-A8VF-01 20 37383791 37383791 C T ACTR5 Missense_Mutation p.R323C 0.41 deleterious(0) probably_damaging(0.994) TCGA-QQ-A8VF-01 20 39792613 39792613 C T PLCG1 Missense_Mutation p.R355C 0.41 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 20 39832209 39832209 C T ZHX3 Missense_Mutation p.V450I 0.41 tolerated(0.73) benign(0.001) TCGA-QQ-A8VF-01 20 40730899 40730899 G A PTPRT Silent p.D1193D 0.40 TCGA-QQ-A8VF-01 20 42143341 42143341 C T L3MBTL1 Missense_Mutation p.R121W 0.43 deleterious(0.01) possibly_damaging(0.711) TCGA-QQ-A8VF-01 20 43093846 43093846 T C C20orf62 Missense_Mutation p.H25R 0.37 tolerated_low_confidence(0.41) unknown(0) TCGA-QQ-A8VF-01 20 44828138 44828138 G A CDH22 Silent p.G449G 0.50 TCGA-QQ-A8VF-01 20 45838796 45838796 G A ZMYND8 3'Flank 0.53 TCGA-QQ-A8VF-01 20 46279991 46279991 C T NCOA3 Missense_Mutation p.P1306L 0.46 deleterious(0.03) possibly_damaging(0.733) TCGA-QQ-A8VF-01 20 47741118 47741118 G A STAU1 Missense_Mutation p.R206W 0.39 deleterious(0) probably_damaging(0.978) TCGA-QQ-A8VF-01 20 49366920 49366920 T C PARD6B Silent p.N338N 0.27 TCGA-QQ-A8VF-01 20 50721851 50721851 T A ZFP64 5'UTR 0.14 TCGA-QQ-A8VF-01 20 55983974 55983974 G - RBM38 3'UTR 0.33 TCGA-QQ-A8VF-01 20 56227643 56227643 G A PMEPA1 Silent p.Y110Y 0.48 TCGA-QQ-A8VF-01 20 57276095 57276095 G A NPEPL1 Missense_Mutation p.A235T 0.46 deleterious(0) probably_damaging(0.944) TCGA-QQ-A8VF-01 20 58457202 58457202 T - SYCP2 Frame_Shift_Del p.S850Afs*5 0.19 TCGA-QQ-A8VF-01 20 60572687 60572687 G A TAF4 Silent p.D1003D 0.49 TCGA-QQ-A8VF-01 20 60578926 60578926 C T TAF4 Silent p.Q744Q 0.21 TCGA-QQ-A8VF-01 20 60892438 60892438 C T LAMA5 Missense_Mutation p.A2492T 0.26 benign(0.036) TCGA-QQ-A8VF-01 20 60926967 60926967 G A LAMA5 Missense_Mutation p.R286W 0.16 probably_damaging(1) TCGA-QQ-A8VF-01 20 61288011 61288011 G A SLCO4A1 Missense_Mutation p.A69T 0.54 tolerated(0.75) benign(0) TCGA-QQ-A8VF-01 20 61288589 61288589 G A SLCO4A1 Silent p.S261S 0.49 TCGA-QQ-A8VF-01 20 61981529 61981529 G - CHRNA4 Frame_Shift_Del p.L412Wfs*153 0.35 TCGA-QQ-A8VF-01 20 62575788 62575788 C T UCKL1 Missense_Mutation p.D290N 0.14 tolerated(0.22) possibly_damaging(0.493) TCGA-QQ-A8VF-01 20 62705341 62705341 G A RGS19 Silent p.S173S 0.45 TCGA-QQ-A8VF-01 20 62872738 62872738 C T MYT1 3'UTR 0.49 TCGA-QQ-A8VF-01 21 18919349 18919349 C T CXADR Silent p.F16F 0.55 TCGA-QQ-A8VF-01 21 31588020 31588020 G A CLDN8 Missense_Mutation p.P75L 0.31 deleterious(0.04) probably_damaging(0.915) TCGA-QQ-A8VF-01 21 33706554 33706554 T C URB1 Missense_Mutation p.D1592G 0.21 deleterious(0.01) possibly_damaging(0.65) TCGA-QQ-A8VF-01 21 33740806 33740806 G A URB1 Missense_Mutation p.P368L 0.33 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 21 33947743 33947743 G A AP000275.65 3'Flank 0.31 TCGA-QQ-A8VF-01 21 34166466 34166466 C T C21orf62 Silent p.A89A 0.49 TCGA-QQ-A8VF-01 21 34399701 34399701 C T OLIG2 Silent p.Y177Y 0.41 TCGA-QQ-A8VF-01 21 34401381 34401382 AG - OLIG2 3'UTR 0.42 TCGA-QQ-A8VF-01 21 34923748 34923748 G A SON Silent p.A737A 0.34 TCGA-QQ-A8VF-01 21 37617519 37617519 C T DOPEY2 Nonsense_Mutation p.R1081* 0.28 TCGA-QQ-A8VF-01 21 38125451 38125451 G A HLCS 3'UTR 0.38 TCGA-QQ-A8VF-01 21 38592541 38592541 C T DSCR3 3'Flank 0.53 TCGA-QQ-A8VF-01 21 38610790 38610790 T C DSCR3 Missense_Mutation p.T108A 0.52 deleterious(0) probably_damaging(0.974) TCGA-QQ-A8VF-01 21 40578101 40578101 G A BRWD1 Nonsense_Mutation p.R1433* 0.27 TCGA-QQ-A8VF-01 21 43221630 43221630 G - PRDM15 Frame_Shift_Del p.Q1432Sfs*16 0.30 TCGA-QQ-A8VF-01 21 43524088 43524088 C T C21orf128 Missense_Mutation p.G49S 0.20 tolerated_low_confidence(0.41) benign(0.001) TCGA-QQ-A8VF-01 21 43711229 43711229 G A ABCG1 Missense_Mutation p.R486Q 0.35 deleterious(0) probably_damaging(0.992) TCGA-QQ-A8VF-01 21 43732221 43732221 G T TFF3 3'UTR 0.18 TCGA-QQ-A8VF-01 21 44437074 44437074 G A PKNOX1 Silent p.A193A 0.40 TCGA-QQ-A8VF-01 21 44473973 44473973 G A CBS 3'UTR 0.41 TCGA-QQ-A8VF-01 21 45223543 45223543 G A RRP1 Missense_Mutation p.R425H 0.56 tolerated_low_confidence(0.43) benign(0.074) TCGA-QQ-A8VF-01 21 45231274 45231274 G A AP001053.11 RNA 0.54 TCGA-QQ-A8VF-01 21 45563148 45563148 G T C21orf33 Missense_Mutation p.G195C 0.38 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 21 45670750 45670750 G A DNMT3L Silent p.F284F 0.39 TCGA-QQ-A8VF-01 21 45744761 45744763 AGA - PFKL In_Frame_Del p.K614del 0.52 TCGA-QQ-A8VF-01 21 45750065 45750065 C T C21orf2 3'UTR 0.23 TCGA-QQ-A8VF-01 21 45845688 45845688 C A TRPM2 Missense_Mutation p.P1258H 0.12 deleterious(0) probably_damaging(0.98) TCGA-QQ-A8VF-01 21 46930130 46930130 C T COL18A1 Silent p.I1396I 0.40 TCGA-QQ-A8VF-01 21 47330865 47330865 C T PCBP3 Missense_Mutation p.T174M 0.49 deleterious(0) probably_damaging(0.995) TCGA-QQ-A8VF-01 21 47918596 47918596 C T DIP2A Missense_Mutation p.R169W 0.17 deleterious(0) probably_damaging(0.973) TCGA-QQ-A8VF-01 22 17583083 17583083 G A IL17RA Missense_Mutation p.R218H 0.40 tolerated(0.58) benign(0.001) TCGA-QQ-A8VF-01 22 18291643 18291643 C T MICAL3 Missense_Mutation p.V1873M 0.42 probably_damaging(1) TCGA-QQ-A8VF-01 22 18301201 18301201 T C MICAL3 Missense_Mutation p.D1409G 0.47 benign(0.305) TCGA-QQ-A8VF-01 22 18301245 18301245 C T MICAL3 Silent p.P1394P 0.45 TCGA-QQ-A8VF-01 22 18835115 18835115 G A AC008132.13 Missense_Mutation p.R224Q 0.18 tolerated(0.25) benign(0.129) TCGA-QQ-A8VF-01 22 19343784 19343784 C - HIRA Frame_Shift_Del p.E810Kfs*13 0.20 TCGA-QQ-A8VF-01 22 19969122 19969122 G A ARVCF Missense_Mutation p.R170C 0.44 deleterious(0.04) possibly_damaging(0.667) TCGA-QQ-A8VF-01 22 20100980 20100980 G A TRMT2A Silent p.D469D 0.27 TCGA-QQ-A8VF-01 22 20786078 20786078 G A SCARF2 Silent p.G96G 0.38 TCGA-QQ-A8VF-01 22 20800739 20800739 G A KLHL22 Silent p.D510D 0.51 TCGA-QQ-A8VF-01 22 20936987 20936987 G A MED15 Silent p.P454P 0.56 TCGA-QQ-A8VF-01 22 21067573 21067573 C T PI4KA Missense_Mutation p.R1856Q 0.21 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 22 21133595 21133595 G A SERPIND1 5'UTR 0.36 TCGA-QQ-A8VF-01 22 21152872 21152872 C A PI4KA Missense_Mutation p.R703M 0.20 deleterious(0) possibly_damaging(0.88) TCGA-QQ-A8VF-01 22 21998264 21998264 C T SDF2L1 Missense_Mutation p.R156C 0.42 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 22 23481035 23481035 G A RTDR1 Silent p.S98S 0.56 TCGA-QQ-A8VF-01 22 24121571 24121571 C T MMP11 Silent p.G102G 0.38 TCGA-QQ-A8VF-01 22 24219351 24219351 G A AP000350.10 Missense_Mutation p.G142R 0.48 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 22 24829362 24829362 C T ADORA2A 5'UTR 0.60 TCGA-QQ-A8VF-01 22 25747816 25747816 G A LRP5L Missense_Mutation p.R237C 0.48 deleterious(0) probably_damaging(0.972) TCGA-QQ-A8VF-01 22 26164407 26164407 C - MYO18B Frame_Shift_Del p.P177Lfs*55 0.31 TCGA-QQ-A8VF-01 22 26342166 26342166 C A MYO18B Missense_Mutation p.L1861M 0.51 deleterious(0.04) probably_damaging(0.971) TCGA-QQ-A8VF-01 22 26348270 26348270 C T MYO18B Missense_Mutation p.R1951C 0.15 deleterious(0) probably_damaging(0.968) TCGA-QQ-A8VF-01 22 26688688 26688688 C A SEZ6L Silent p.T137T 0.45 TCGA-QQ-A8VF-01 22 29687554 29687554 C T EWSR1 Silent p.G331G 0.22 TCGA-QQ-A8VF-01 22 30980630 30980630 G A PES1 Missense_Mutation p.P148L 0.15 deleterious(0) possibly_damaging(0.603) TCGA-QQ-A8VF-01 22 31042664 31042664 G A SLC35E4 Silent p.A233A 0.16 TCGA-QQ-A8VF-01 22 31059789 31059789 G A DUSP18 Nonsense_Mutation p.Q68* 0.17 TCGA-QQ-A8VF-01 22 32015760 32015760 C T PISD Silent p.T322T 0.30 TCGA-QQ-A8VF-01 22 35730403 35730403 G A TOM1 Silent p.A370A 0.37 TCGA-QQ-A8VF-01 22 35742934 35742934 G A TOM1 Silent p.A432A 0.55 TCGA-QQ-A8VF-01 22 36205897 36205897 A G RBFOX2 Missense_Mutation p.L131P 0.38 possibly_damaging(0.635) TCGA-QQ-A8VF-01 22 36863698 36863698 G A TXN2 3'UTR 0.53 TCGA-QQ-A8VF-01 22 36916653 36916653 C T EIF3D Missense_Mutation p.R183H 0.45 tolerated(0.1) benign(0.032) TCGA-QQ-A8VF-01 22 37622746 37622746 C T RAC2 Silent p.T182T 0.40 TCGA-QQ-A8VF-01 22 37964207 37964207 G A CDC42EP1 Missense_Mutation p.G186R 0.50 tolerated(0.07) probably_damaging(0.98) TCGA-QQ-A8VF-01 22 38120346 38120346 C T TRIOBP Nonsense_Mutation p.R595* 0.14 TCGA-QQ-A8VF-01 22 39826189 39826189 G A TAB1 Missense_Mutation p.V493M 0.39 tolerated_low_confidence(0.23) benign(0.002) TCGA-QQ-A8VF-01 22 41924556 41924556 C T ACO2 Missense_Mutation p.T761M 0.44 tolerated_low_confidence(0.07) benign(0.364) TCGA-QQ-A8VF-01 22 42209378 42209378 C T CCDC134 Missense_Mutation p.R141C 0.53 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VF-01 22 42898768 42898768 C T SERHL RNA 0.16 TCGA-QQ-A8VF-01 22 44968062 44968062 G A LINC00207 RNA 0.40 TCGA-QQ-A8VF-01 22 45289389 45289389 C T PHF21B Missense_Mutation p.R303Q 0.34 deleterious(0) probably_damaging(0.991) TCGA-QQ-A8VF-01 22 45929676 45929676 C T FBLN1 Missense_Mutation p.R228W 0.39 deleterious(0.01) probably_damaging(0.965) TCGA-QQ-A8VF-01 22 45929716 45929716 G A FBLN1 Missense_Mutation p.R241H 0.43 tolerated(0.09) probably_damaging(0.954) TCGA-QQ-A8VF-01 22 46658399 46658399 G A PKDREJ Missense_Mutation p.T274M 0.32 tolerated(0.05) benign(0.33) TCGA-QQ-A8VF-01 22 46761207 46761207 C T CELSR1 Silent p.S2825S 0.38 TCGA-QQ-A8VF-01 22 46792621 46792622 CA - CELSR1 Frame_Shift_Del p.V1908Gfs*38 0.12 TCGA-QQ-A8VF-01 22 47058964 47058964 G A GRAMD4 Missense_Mutation p.R165H 0.42 deleterious(0.01) possibly_damaging(0.576) TCGA-QQ-A8VF-01 22 50282073 50282075 CTT - ZBED4 3'UTR 0.53 TCGA-QQ-A8VF-01 22 50320962 50320962 G A CRELD2 3'UTR 0.43 TCGA-QQ-A8VF-01 22 50470537 50470537 C T TTLL8 Missense_Mutation p.A445T 0.56 deleterious(0) probably_damaging(0.975) TCGA-QQ-A8VF-01 22 50648627 50648627 G A SELO Silent p.A319A 0.37 TCGA-QQ-A8VF-01 22 50713996 50713996 C T PLXNB2 3'UTR 0.31 TCGA-QQ-A8VF-01 22 50885878 50885878 C T SBF1 Missense_Mutation p.R1819H 0.07 deleterious(0) possibly_damaging(0.87) TCGA-QQ-A8VF-01 22 50893011 50893011 C T SBF1 Missense_Mutation p.R1658H 0.39 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 22 50941950 50941950 G A LMF2 Missense_Mutation p.P665L 0.41 deleterious(0.03) benign(0.016) TCGA-QQ-A8VF-01 22 50966946 50966946 C A TYMP Nonsense_Mutation p.E171* 0.11 TCGA-QQ-A8VF-01 22 51171216 51171216 A T SHANK3 3'UTR 0.44 TCGA-QQ-A8VF-01 2 101650045 101650045 C T TBC1D8 Silent p.T578T 0.72 TCGA-QQ-A8VF-01 2 103141553 103141553 G A SLC9A4 Missense_Mutation p.R630H 0.77 deleterious(0.03) possibly_damaging(0.748) TCGA-QQ-A8VF-01 2 103335366 103335366 C T MFSD9 Missense_Mutation p.R313H 0.85 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VF-01 2 105858503 105858503 C T GPR45 Missense_Mutation p.P63L 0.87 deleterious(0) possibly_damaging(0.716) TCGA-QQ-A8VF-01 2 106498349 106498349 G A NCK2 Silent p.A264A 0.84 TCGA-QQ-A8VF-01 2 108921653 108921653 C T SULT1C2 Silent p.H187H 0.75 TCGA-QQ-A8VF-01 2 118753911 118753911 T A CCDC93 Nonsense_Mutation p.K131* 0.86 TCGA-QQ-A8VF-01 2 121107039 121107039 G A INHBB Silent p.S271S 0.33 TCGA-QQ-A8VF-01 2 131525597 131525597 A G AMER3 3'UTR 0.29 TCGA-QQ-A8VF-01 2 149447829 149447829 A - EPC2 Frame_Shift_Del p.E70Rfs*39 0.70 TCGA-QQ-A8VF-01 2 158152992 158152993 - A GALNT5 Frame_Shift_Ins p.N657Kfs*4 0.47 TCGA-QQ-A8VF-01 2 159517789 159517789 G A PKP4 Intron 0.83 TCGA-QQ-A8VF-01 2 160194093 160194093 C T BAZ2B Missense_Mutation p.R1882Q 0.70 benign(0.14) TCGA-QQ-A8VF-01 2 160661671 160661671 C T LY75 Intron 0.78 TCGA-QQ-A8VF-01 2 171256757 171256757 C T MYO3B Silent p.F617F 0.80 TCGA-QQ-A8VF-01 2 171323070 171323070 C T MYO3B Missense_Mutation p.R955C 0.80 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 2 171323176 171323176 G A MYO3B Missense_Mutation p.R990H 0.86 deleterious(0) possibly_damaging(0.906) TCGA-QQ-A8VF-01 2 172248697 172248697 C T METTL8 5'UTR 0.83 TCGA-QQ-A8VF-01 2 174783367 174783367 G A SP3 Missense_Mutation p.R596W 0.81 deleterious(0) probably_damaging(0.95) TCGA-QQ-A8VF-01 2 177017651 177017651 C T HOXD4 Missense_Mutation p.T250M 0.82 tolerated(0.08) benign(0.008) TCGA-QQ-A8VF-01 2 178086723 178086723 T - HNRNPA3 3'Flank 0.21 TCGA-QQ-A8VF-01 2 179588603 179588603 C T TTN Missense_Mutation p.R7128H 0.80 TCGA-QQ-A8VF-01 2 185802564 185802564 G A ZNF804A Missense_Mutation p.R814Q 0.85 deleterious(0) probably_damaging(0.953) TCGA-QQ-A8VF-01 2 189854840 189854840 G A COL3A1 Missense_Mutation p.G237R 0.87 unknown(0) TCGA-QQ-A8VF-01 2 196602560 196602560 A - DNAH7 3'UTR 0.72 TCGA-QQ-A8VF-01 2 202050811 202050811 G A CASP10 Missense_Mutation p.R104Q 0.53 tolerated(0.37) benign(0.004) TCGA-QQ-A8VF-01 2 203630259 203630259 C T FAM117B Silent p.L514L 0.62 TCGA-QQ-A8VF-01 2 204735534 204735534 T C CTLA4 Missense_Mutation p.V112A 0.33 deleterious(0) possibly_damaging(0.833) TCGA-QQ-A8VF-01 2 207988559 207988559 G A KLF7 Silent p.N224N 0.66 TCGA-QQ-A8VF-01 2 209165749 209165749 C T PIKFYVE Missense_Mutation p.T380M 0.69 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VF-01 2 210559652 210559652 G A MAP2 Missense_Mutation p.A920T 0.38 deleterious_low_confidence(0) probably_damaging(1) TCGA-QQ-A8VF-01 2 219867593 219867593 A T CCDC108 3'UTR 0.77 TCGA-QQ-A8VF-01 2 220412656 220412656 C T TMEM198 Missense_Mutation p.R199C 0.86 tolerated(0.11) possibly_damaging(0.898) TCGA-QQ-A8VF-01 2 230231633 230231633 G A DNER Silent p.I686I 0.81 TCGA-QQ-A8VF-01 2 231973849 231973849 C T HTR2B Silent p.S276S 0.78 TCGA-QQ-A8VF-01 2 237406004 237406004 G A IQCA1 Silent p.Y46Y 0.74 TCGA-QQ-A8VF-01 2 238006438 238006438 G A COPS8 3'UTR 0.35 TCGA-QQ-A8VF-01 2 238683089 238683089 G A LRRFIP1 Missense_Mutation p.R599Q 0.77 deleterious(0) probably_damaging(0.96) TCGA-QQ-A8VF-01 2 239025621 239025621 G A ESPNL Silent p.A311A 0.74 TCGA-QQ-A8VF-01 2 241390223 241390223 C T AC110619.2 Missense_Mutation p.G62S 0.22 benign(0) TCGA-QQ-A8VF-01 2 241621882 241621882 C T AQP12B Missense_Mutation p.A125T 0.76 deleterious(0) possibly_damaging(0.814) TCGA-QQ-A8VF-01 2 241631704 241631704 G A AQP12A Missense_Mutation p.A113T 0.10 deleterious(0) possibly_damaging(0.87) TCGA-QQ-A8VF-01 2 241817048 241817048 C T AGXT Missense_Mutation p.P314L 0.24 deleterious(0.03) benign(0.055) TCGA-QQ-A8VF-01 2 27600998 27600998 C - ZNF513 Frame_Shift_Del p.G347Vfs*33 0.45 TCGA-QQ-A8VF-01 2 27910821 27910821 G A SLC4A1AP Missense_Mutation p.E713K 0.89 tolerated(0.52) benign(0.023) TCGA-QQ-A8VF-01 2 28634968 28634968 G - FOSL2 Frame_Shift_Del p.G213Vfs*7 0.31 TCGA-QQ-A8VF-01 2 29287719 29287719 C - C2orf71 3'UTR 0.21 TCGA-QQ-A8VF-01 2 37478348 37478348 T - PRKD3 3'UTR 0.57 TCGA-QQ-A8VF-01 2 46313408 46313408 G A PRKCE Missense_Mutation p.R500H 0.80 deleterious(0.01) probably_damaging(0.975) TCGA-QQ-A8VF-01 2 46378352 46378352 T A PRKCE Missense_Mutation p.V635D 0.43 deleterious(0.01) probably_damaging(0.953) TCGA-QQ-A8VF-01 2 46808753 46808754 - A RHOQ 3'UTR 0.23 TCGA-QQ-A8VF-01 2 54853109 54853110 - A SPTBN1 Frame_Shift_Ins p.H464Afs*5 0.12 TCGA-QQ-A8VF-01 2 54895850 54895850 G - SPTBN1 3'UTR 0.08 TCGA-QQ-A8VF-01 2 5838410 5838410 T - SOX11 3'UTR 0.65 TCGA-QQ-A8VF-01 2 5841055 5841056 - G SOX11 3'UTR 0.59 TCGA-QQ-A8VF-01 2 69701249 69701249 G A AAK1 3'UTR 0.75 TCGA-QQ-A8VF-01 2 70443939 70443939 G A TIA1 Intron 0.81 TCGA-QQ-A8VF-01 2 71187093 71187093 G A ATP6V1B1 Missense_Mutation p.R157H 0.87 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 2 85626356 85626356 G A CAPG Missense_Mutation p.A190V 0.76 tolerated(0.09) benign(0.429) TCGA-QQ-A8VF-01 2 88390578 88390578 C T SMYD1 Silent p.A192A 0.87 TCGA-QQ-A8VF-01 2 99438603 99438603 G A KIAA1211L Silent p.A711A 0.88 TCGA-QQ-A8VF-01 2 99651839 99651839 T - TSGA10 Frame_Shift_Del p.M490Wfs*47 0.17 TCGA-QQ-A8VF-01 3 10264469 10264469 G A IRAK2 Missense_Mutation p.R388Q 0.94 deleterious(0) probably_damaging(0.975) TCGA-QQ-A8VF-01 3 10312062 10312064 GCA - TATDN2 In_Frame_Del p.S402del 0.23 TCGA-QQ-A8VF-01 3 108216928 108216928 C A MYH15 Missense_Mutation p.A217S 0.24 deleterious(0) possibly_damaging(0.667) TCGA-QQ-A8VF-01 3 110831177 110831177 C T PVRL3 Missense_Mutation p.P154L 0.80 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 3 111451375 111451375 G T PLCXD2 Intron 0.81 TCGA-QQ-A8VF-01 3 113367711 113367711 T - KIAA2018 3'UTR 0.71 TCGA-QQ-A8VF-01 3 114057756 114057757 - A ZBTB20 3'UTR 0.18 TCGA-QQ-A8VF-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.09 TCGA-QQ-A8VF-01 3 11600194 11600194 C T VGLL4 Missense_Mutation p.V243M 0.83 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 3 124175554 124175554 G A KALRN Missense_Mutation p.R1276Q 0.80 deleterious(0) benign(0.228) TCGA-QQ-A8VF-01 3 126261178 126261178 C T CHST13 Silent p.Y261Y 0.81 TCGA-QQ-A8VF-01 3 126735391 126735391 C - PLXNA1 Frame_Shift_Del p.Q1019Rfs*22 0.17 TCGA-QQ-A8VF-01 3 129266413 129266413 G A H1FOO Missense_Mutation p.V90I 0.77 tolerated(0.7) benign(0.107) TCGA-QQ-A8VF-01 3 132075603 132075603 A C ACPP Missense_Mutation p.S348R 0.21 tolerated(0.13) benign(0.26) TCGA-QQ-A8VF-01 3 140785630 140785630 C T SPSB4 Silent p.N228N 0.63 TCGA-QQ-A8VF-01 3 148459829 148459829 C T AGTR1 Missense_Mutation p.T336M 0.77 tolerated(0.06) benign(0.005) TCGA-QQ-A8VF-01 3 149193670 149193670 G A TM4SF4 Missense_Mutation p.G79S 0.77 deleterious(0.05) probably_damaging(0.982) TCGA-QQ-A8VF-01 3 149458825 149458825 T - COMMD2 3'UTR 0.39 TCGA-QQ-A8VF-01 3 151046376 151046376 T - P2RY13 Frame_Shift_Del p.K156Nfs*26 0.48 TCGA-QQ-A8VF-01 3 15301246 15301246 C T SH3BP5 Intron 0.74 TCGA-QQ-A8VF-01 3 15468122 15468122 C T METTL6 5'UTR 0.89 TCGA-QQ-A8VF-01 3 176740814 176740814 A - TBL1XR1 3'UTR 0.62 TCGA-QQ-A8VF-01 3 179115585 179115585 C T MFN1 3'Flank 0.84 TCGA-QQ-A8VF-01 3 182871854 182871854 G A LAMP3 Silent p.V125V 0.79 TCGA-QQ-A8VF-01 3 183401583 183401584 - T KLHL24 3'UTR 0.75 TCGA-QQ-A8VF-01 3 183542946 183542946 G T MAP6D1 Silent p.T130T 0.11 TCGA-QQ-A8VF-01 3 183679308 183679308 C T ABCC5 Silent p.P790P 0.33 TCGA-QQ-A8VF-01 3 183752992 183752992 G A HTR3D Intron 0.73 TCGA-QQ-A8VF-01 3 183898716 183898716 G A AP2M1 Missense_Mutation p.R170Q 0.85 deleterious(0) possibly_damaging(0.836) TCGA-QQ-A8VF-01 3 183961681 183961681 C T ALG3 Missense_Mutation p.R277H 0.94 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 3 185797795 185797795 T C ETV5 Missense_Mutation p.Q154R 0.07 tolerated(0.64) benign(0.024) TCGA-QQ-A8VF-01 3 186272377 186272377 G A TBCCD1 Missense_Mutation p.R404C 0.82 deleterious(0.03) benign(0.07) TCGA-QQ-A8VF-01 3 186505416 186505416 T - EIF4A2 Intron 0.42 TCGA-QQ-A8VF-01 3 190122569 190122569 G A CLDN16 Missense_Mutation p.R149Q 0.79 deleterious(0.01) probably_damaging(0.954) TCGA-QQ-A8VF-01 3 195512220 195512220 G A MUC4 Silent p.H2077H 0.24 TCGA-QQ-A8VF-01 3 195595228 195595229 - G TNK2 Frame_Shift_Ins p.P711Afs*4 0.47 TCGA-QQ-A8VF-01 3 33425643 33425643 G A FBXL2 Missense_Mutation p.E372K 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-QQ-A8VF-01 3 33592806 33592806 G A CLASP2 Missense_Mutation p.R1039C 0.77 deleterious(0) possibly_damaging(0.88) TCGA-QQ-A8VF-01 3 36873225 36873225 G A TRANK1 Missense_Mutation p.R2573W 0.84 deleterious(0.01) possibly_damaging(0.776) TCGA-QQ-A8VF-01 3 38622738 38622738 C T SCN5A Missense_Mutation p.R971H 0.80 tolerated(0.32) benign(0.004) TCGA-QQ-A8VF-01 3 42733411 42733411 C T KLHL40 Missense_Mutation p.R598W 0.33 deleterious(0) probably_damaging(0.991) TCGA-QQ-A8VF-01 3 46450868 46450925 ATTTGTCTAAGATCACATAACTAGGAAGTGGCAGAACTGATTCTCCAGCCCTGGTAGC - CCRL2 3'UTR 0.36 TCGA-QQ-A8VF-01 3 46761405 46761405 C T PRSS46 3'UTR 0.79 TCGA-QQ-A8VF-01 3 48510905 48510905 C T SHISA5 Silent p.P166P 0.58 TCGA-QQ-A8VF-01 3 49764911 49764911 G A IP6K1 Missense_Mutation p.R324W 0.68 deleterious(0.01) probably_damaging(0.98) TCGA-QQ-A8VF-01 3 49949326 49949326 C T MON1A Silent p.P179P 0.77 TCGA-QQ-A8VF-01 3 51991519 51991519 T C PCBP4 3'UTR 0.06 TCGA-QQ-A8VF-01 3 5220385 5220385 C T ARL8B Missense_Mutation p.S183F 0.88 deleterious(0) possibly_damaging(0.738) TCGA-QQ-A8VF-01 3 52581711 52581711 A - PBRM1 3'Flank 0.46 TCGA-QQ-A8VF-01 3 52696199 52696199 C T PBRM1 Missense_Mutation p.E160K 0.47 tolerated(0.12) possibly_damaging(0.502) TCGA-QQ-A8VF-01 3 52855094 52855094 G A ITIH4 Missense_Mutation p.A531V 0.45 deleterious(0.02) benign(0.126) TCGA-QQ-A8VF-01 3 58486737 58486737 C T KCTD6 Missense_Mutation p.T31M 0.64 deleterious(0.03) possibly_damaging(0.816) TCGA-QQ-A8VF-01 3 58622140 58622140 C T FAM3D Missense_Mutation p.D156N 0.67 tolerated(0.1) benign(0.063) TCGA-QQ-A8VF-01 3 69151050 69151050 G C ARL6IP5 Silent p.G79G 0.72 TCGA-QQ-A8VF-01 3 79638974 79638974 C A ROBO1 Missense_Mutation p.D30Y 0.69 tolerated_low_confidence(0.29) benign(0.026) TCGA-QQ-A8VF-01 3 86116470 86116470 A - CADM2 3'Flank 0.62 TCGA-QQ-A8VF-01 3 8794754 8794754 G A OXTR Missense_Mutation p.T360M 0.91 tolerated(0.15) possibly_damaging(0.799) TCGA-QQ-A8VF-01 3 9022383 9022383 C T SRGAP3 3'UTR 0.85 TCGA-QQ-A8VF-01 3 9775872 9775872 G A BRPF1 Silent p.A16A 0.88 TCGA-QQ-A8VF-01 3 9828756 9828756 A G TADA3 Silent p.H248H 0.24 TCGA-QQ-A8VF-01 4 110452635 110452635 T C SEC24B Missense_Mutation p.M1116T 0.81 tolerated(0.21) benign(0.075) TCGA-QQ-A8VF-01 4 113333011 113333011 G A ALPK1 Missense_Mutation p.R102Q 0.84 tolerated(0.72) benign(0.004) TCGA-QQ-A8VF-01 4 114375481 114375481 G A CAMK2D 3'UTR 0.76 TCGA-QQ-A8VF-01 4 115749083 115749083 C T NDST4 Silent p.T836T 0.12 TCGA-QQ-A8VF-01 4 121958681 121958681 C T NDNF Missense_Mutation p.D149N 0.74 deleterious(0.01) benign(0.068) TCGA-QQ-A8VF-01 4 128627684 128627684 G A INTU Missense_Mutation p.A611T 0.69 tolerated(0.19) benign(0.02) TCGA-QQ-A8VF-01 4 128864930 128864930 C T MFSD8 Missense_Mutation p.R139H 0.79 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 4 140640621 140640621 G A MAML3 Silent p.D1091D 0.77 TCGA-QQ-A8VF-01 4 141542055 141542055 A - TBC1D9 3'UTR 0.26 TCGA-QQ-A8VF-01 4 143007325 143007328 TTCT - INPP4B Frame_Shift_Del p.K819Mfs*2 0.77 TCGA-QQ-A8VF-01 4 148601600 148601601 AA - PRMT10 Frame_Shift_Del p.F71Qfs*4 0.42 TCGA-QQ-A8VF-01 4 15067858 15067858 T - CPEB2 Frame_Shift_Del p.C989Vfs*31 0.39 TCGA-QQ-A8VF-01 4 153896300 153896300 G A FHDC1 Silent p.A619A 0.28 TCGA-QQ-A8VF-01 4 153897545 153897545 C A FHDC1 Missense_Mutation p.S1034R 0.79 deleterious(0) probably_damaging(0.941) TCGA-QQ-A8VF-01 4 153897721 153897721 G A FHDC1 Missense_Mutation p.R1093Q 0.86 deleterious(0) probably_damaging(0.925) TCGA-QQ-A8VF-01 4 154257295 154257295 C T TRIM2 3'UTR 0.63 TCGA-QQ-A8VF-01 4 156289796 156289796 G A MAP9 Missense_Mutation p.P217L 0.33 tolerated(1) benign(0.002) TCGA-QQ-A8VF-01 4 167655855 167655855 T A SPOCK3 3'UTR 0.79 TCGA-QQ-A8VF-01 4 1746332 1746332 G A TACC3 Missense_Mutation p.A771T 0.74 deleterious(0) probably_damaging(0.981) TCGA-QQ-A8VF-01 4 178257403 178257403 C T NEIL3 Silent p.N185N 0.73 TCGA-QQ-A8VF-01 4 183063471 183063471 G A AC108142.1 RNA 0.70 TCGA-QQ-A8VF-01 4 184190645 184190645 C T WWC2 Intron 0.40 TCGA-QQ-A8VF-01 4 186260609 186260609 C T SNX25 Missense_Mutation p.T500M 0.73 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VF-01 4 186544315 186544315 C T SORBS2 Silent p.P852P 0.79 TCGA-QQ-A8VF-01 4 2045616 2045616 G A C4orf48 Missense_Mutation p.R117H 0.82 deleterious(0) possibly_damaging(0.741) TCGA-QQ-A8VF-01 4 22416220 22416220 G A GPR125 Intron 0.88 TCGA-QQ-A8VF-01 4 2306926 2306926 C T ZFYVE28 Missense_Mutation p.G381R 0.06 tolerated_low_confidence(0.22) benign(0.003) TCGA-QQ-A8VF-01 4 3237972 3237972 T - HTT Frame_Shift_Del p.F2962Lfs*23 0.51 TCGA-QQ-A8VF-01 4 3475352 3475352 C T DOK7 Missense_Mutation p.A107V 0.87 deleterious(0.03) possibly_damaging(0.623) TCGA-QQ-A8VF-01 4 39367952 39367954 CTT - RFC1 5'UTR 0.76 TCGA-QQ-A8VF-01 4 48114522 48114522 G A TXK Missense_Mutation p.T61M 0.83 tolerated(0.24) benign(0.161) TCGA-QQ-A8VF-01 4 52779833 52779833 G A DCUN1D4 3'UTR 0.89 TCGA-QQ-A8VF-01 4 57189616 57189616 G A KIAA1211 Silent p.P1087P 0.10 TCGA-QQ-A8VF-01 4 70808264 70808264 G A CSN1S1 Missense_Mutation p.R124H 0.82 tolerated(0.72) benign(0.005) TCGA-QQ-A8VF-01 4 74347531 74347532 - T AFM Frame_Shift_Ins p.L16Ffs*3 0.69 TCGA-QQ-A8VF-01 4 76569243 76569243 C - G3BP2 3'UTR 0.12 TCGA-QQ-A8VF-01 4 77662127 77662127 G A SHROOM3 Missense_Mutation p.R934H 0.94 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 4 80246701 80246701 C T NAA11 Missense_Mutation p.V111I 0.88 tolerated(0.05) possibly_damaging(0.775) TCGA-QQ-A8VF-01 4 82064059 82064060 - AG PRKG2 Frame_Shift_Ins p.E433Wfs*3 0.67 TCGA-QQ-A8VF-01 4 83745800 83745800 T - SEC31A Frame_Shift_Del p.I1107Lfs*13 0.68 TCGA-QQ-A8VF-01 4 90169350 90169350 C T GPRIN3 Missense_Mutation p.V638I 0.71 deleterious(0.02) probably_damaging(0.997) TCGA-QQ-A8VF-01 5 100143696 100143696 T C ST8SIA4 3'UTR 0.11 TCGA-QQ-A8VF-01 5 102364666 102364666 G A PAM Missense_Mutation p.R941Q 0.39 tolerated(0.34) probably_damaging(0.975) TCGA-QQ-A8VF-01 5 10258269 10258269 G A CCT5 Missense_Mutation p.V193I 0.36 tolerated(0.17) benign(0.042) TCGA-QQ-A8VF-01 5 10258374 10258374 G A CCT5 Missense_Mutation p.V228M 0.38 deleterious(0.02) probably_damaging(0.995) TCGA-QQ-A8VF-01 5 111066317 111066317 C T NREP 3'UTR 0.49 TCGA-QQ-A8VF-01 5 111504750 111504750 G A EPB41L4A Missense_Mutation p.R598C 0.40 deleterious_low_confidence(0) possibly_damaging(0.639) TCGA-QQ-A8VF-01 5 112178782 112178782 G A APC Silent p.S2497S 0.17 TCGA-QQ-A8VF-01 5 115781802 115781802 T - SEMA6A 3'UTR 0.39 TCGA-QQ-A8VF-01 5 115823840 115823842 GAA - SEMA6A In_Frame_Del p.F236del 0.33 TCGA-QQ-A8VF-01 5 118468889 118468889 A - DMXL1 Frame_Shift_Del p.M461Wfs*44 0.19 TCGA-QQ-A8VF-01 5 118485627 118485627 C T DMXL1 Missense_Mutation p.R1369C 0.48 deleterious(0) probably_damaging(0.988) TCGA-QQ-A8VF-01 5 130726870 130726871 - TA CDC42SE2 3'UTR 0.34 TCGA-QQ-A8VF-01 5 131647764 131647764 G A SLC22A4 Intron 0.48 TCGA-QQ-A8VF-01 5 131973895 131973895 C T RAD50 Nonsense_Mutation p.R1200* 0.45 TCGA-QQ-A8VF-01 5 133710108 133710108 G A UBE2B Missense_Mutation p.A27T 0.25 tolerated(0.17) benign(0.062) TCGA-QQ-A8VF-01 5 135188462 135188462 G A SLC25A48 Missense_Mutation p.D125N 0.45 deleterious(0) probably_damaging(0.959) TCGA-QQ-A8VF-01 5 138728058 138728058 G T PROB1 Missense_Mutation p.L905I 0.37 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 5 139221883 139221883 C A PSD2 Missense_Mutation p.L714I 0.58 tolerated(0.15) probably_damaging(0.967) TCGA-QQ-A8VF-01 5 139948429 139948429 T C SLC35A4 3'UTR 0.37 TCGA-QQ-A8VF-01 5 140021523 140021523 C T TMCO6 Missense_Mutation p.A128V 0.51 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 5 140167441 140167441 C T PCDHA1 Silent p.P522P 0.27 TCGA-QQ-A8VF-01 5 140188384 140188384 C T PCDHA4 Missense_Mutation p.R538C 0.39 deleterious_low_confidence(0.01) probably_damaging(0.932) TCGA-QQ-A8VF-01 5 140188963 140188963 G A PCDHA4 Missense_Mutation p.A731T 0.48 tolerated_low_confidence(0.17) benign(0.006) TCGA-QQ-A8VF-01 5 140229448 140229448 G A PCDHA9 Silent p.A456A 0.44 TCGA-QQ-A8VF-01 5 140531698 140531698 C T PCDHB6 Silent p.G620G 0.43 TCGA-QQ-A8VF-01 5 140555167 140555168 TT - PCDHB7 3'UTR 0.13 TCGA-QQ-A8VF-01 5 140572677 140572677 C T PCDHB10 Silent p.G184G 0.18 TCGA-QQ-A8VF-01 5 140594358 140594358 G A PCDHB13 Silent p.P221P 0.45 TCGA-QQ-A8VF-01 5 140731195 140731195 C T PCDHGB1 Silent p.H456H 0.47 TCGA-QQ-A8VF-01 5 140769360 140769360 C T PCDHGB4 Missense_Mutation p.R637C 0.44 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 5 140783149 140783149 G T PCDHGA9 Silent p.L210L 0.33 TCGA-QQ-A8VF-01 5 140799401 140799401 A G PCDHGB7 Missense_Mutation p.T659A 0.47 tolerated(0.09) probably_damaging(0.926) TCGA-QQ-A8VF-01 5 140865366 140865366 G A PCDHGC4 Missense_Mutation p.R209H 0.37 tolerated(0.73) benign(0.032) TCGA-QQ-A8VF-01 5 141024630 141024630 G A FCHSD1 Missense_Mutation p.T466M 0.12 deleterious(0) benign(0.018) TCGA-QQ-A8VF-01 5 141060009 141060009 C T ARAP3 Silent p.T15T 0.47 TCGA-QQ-A8VF-01 5 142601982 142601982 A G ARHGAP26 Missense_Mutation p.I806V 0.35 tolerated(0.26) benign(0.112) TCGA-QQ-A8VF-01 5 143853756 143853756 A - KCTD16 3'UTR 0.17 TCGA-QQ-A8VF-01 5 146780396 146780396 G A DPYSL3 Silent p.S437S 0.12 TCGA-QQ-A8VF-01 5 147207586 147207586 G A SPINK1 Missense_Mutation p.R65W 0.51 deleterious(0) benign(0.326) TCGA-QQ-A8VF-01 5 147480079 147480079 C T SPINK5 Silent p.N385N 0.38 TCGA-QQ-A8VF-01 5 147498092 147498092 G A SPINK5 Silent p.S735S 0.48 TCGA-QQ-A8VF-01 5 149247333 149247333 C T PDE6A Nonsense_Mutation p.W743* 0.20 TCGA-QQ-A8VF-01 5 149933318 149933318 G - NDST1 3'UTR 0.35 TCGA-QQ-A8VF-01 5 153855193 153855193 T C HAND1 3'UTR 0.38 TCGA-QQ-A8VF-01 5 156590536 156590536 G A FAM71B Missense_Mutation p.A247V 0.35 tolerated(0.54) benign(0.003) TCGA-QQ-A8VF-01 5 157232987 157232987 G A CLINT1 Missense_Mutation p.R277C 0.33 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 5 158139243 158139243 C T EBF1 Missense_Mutation p.G490R 0.37 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-QQ-A8VF-01 5 158585096 158585096 G A RNF145 3'Flank 0.52 TCGA-QQ-A8VF-01 5 1593292 1593292 C T CTD-2012J19.3 5'Flank 0.45 TCGA-QQ-A8VF-01 5 159820603 159820604 - T C5orf54 3'UTR 0.33 TCGA-QQ-A8VF-01 5 160721370 160721370 C A GABRB2 Missense_Mutation p.E419D 0.32 tolerated(0.41) benign(0.02) TCGA-QQ-A8VF-01 5 171290367 171290367 C T FBXW11 3'UTR 0.16 TCGA-QQ-A8VF-01 5 171760884 171760884 G A SH3PXD2B 3'UTR 0.48 TCGA-QQ-A8VF-01 5 173385107 173385107 C T CPEB4 3'UTR 0.45 TCGA-QQ-A8VF-01 5 17354678 17354678 C T CTD-2139B15.2 RNA 0.36 TCGA-QQ-A8VF-01 5 174919176 174919176 C T SFXN1 Nonsense_Mutation p.R24* 0.52 TCGA-QQ-A8VF-01 5 176070219 176070219 C T EIF4E1B Missense_Mutation p.T51M 0.46 tolerated(0.1) benign(0.012) TCGA-QQ-A8VF-01 5 176824067 176824067 G A SLC34A1 Missense_Mutation p.A470T 0.39 tolerated(0.18) benign(0.025) TCGA-QQ-A8VF-01 5 176831907 176831907 T C F12 Missense_Mutation p.T180A 0.17 tolerated(0.13) benign(0.093) TCGA-QQ-A8VF-01 5 178418473 178418473 G A GRM6 Missense_Mutation p.T270M 0.48 deleterious(0.02) probably_damaging(0.954) TCGA-QQ-A8VF-01 5 178548720 178548720 G A ADAMTS2 Silent p.Y1040Y 0.45 TCGA-QQ-A8VF-01 5 179393918 179393918 G A RNF130 Silent p.L346L 0.43 TCGA-QQ-A8VF-01 5 179977097 179977097 C T CNOT6 Silent p.L93L 0.46 TCGA-QQ-A8VF-01 5 180048063 180048063 G A FLT4 Intron 0.05 TCGA-QQ-A8VF-01 5 1878497 1878499 GGC - IRX4 In_Frame_Del p.A382del 0.40 TCGA-QQ-A8VF-01 5 1880871 1880871 G A IRX4 Silent p.Y125Y 0.40 TCGA-QQ-A8VF-01 5 195070 195070 G A LRRC14B Missense_Mutation p.G383S 0.14 tolerated(0.07) benign(0.099) TCGA-QQ-A8VF-01 5 224542 224542 G A SDHA Missense_Mutation p.G73D 0.03 deleterious_low_confidence(0) probably_damaging(1) TCGA-QQ-A8VF-01 5 24509813 24509813 A T CDH10 Missense_Mutation p.I373N 0.49 deleterious(0) probably_damaging(0.995) TCGA-QQ-A8VF-01 5 39285067 39285067 C T C9 3'UTR 0.50 TCGA-QQ-A8VF-01 5 40852443 40852443 G A CARD6 Missense_Mutation p.D337N 0.06 tolerated(0.29) possibly_damaging(0.835) TCGA-QQ-A8VF-01 5 41004528 41004528 T - MROH2B Frame_Shift_Del p.I1372Sfs*5 0.42 TCGA-QQ-A8VF-01 5 43039927 43039927 A G ANXA2R Silent p.S74S 0.40 TCGA-QQ-A8VF-01 5 43280372 43280372 C T NIM1K Silent p.L284L 0.40 TCGA-QQ-A8VF-01 5 43651928 43651928 C T NNT Missense_Mutation p.A602V 0.43 tolerated(0.06) benign(0.021) TCGA-QQ-A8VF-01 5 485289 485289 C T SLC9A3 Missense_Mutation p.V245M 0.47 tolerated(0.09) possibly_damaging(0.785) TCGA-QQ-A8VF-01 5 624591 624591 C T CEP72 Missense_Mutation p.R137C 0.48 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 5 66479269 66479269 G T CD180 Missense_Mutation p.L468I 0.13 deleterious(0.02) possibly_damaging(0.688) TCGA-QQ-A8VF-01 5 74894119 74894119 T - POLK 3'UTR 0.21 TCGA-QQ-A8VF-01 5 74986318 74986318 G A POC5 Missense_Mutation p.R289C 0.36 deleterious(0) benign(0.231) TCGA-QQ-A8VF-01 5 74986355 74986355 G A POC5 Silent p.Y276Y 0.21 TCGA-QQ-A8VF-01 5 75912209 75912209 T C F2RL2 3'UTR 0.19 TCGA-QQ-A8VF-01 5 7859616 7859616 G A FASTKD3 Missense_Mutation p.R641C 0.35 tolerated(0.07) benign(0.009) TCGA-QQ-A8VF-01 5 7868054 7868054 C T FASTKD3 Missense_Mutation p.R48Q 0.13 tolerated(0.47) benign(0.001) TCGA-QQ-A8VF-01 5 79854743 79854743 C - ANKRD34B Frame_Shift_Del p.A366Qfs*26 0.37 TCGA-QQ-A8VF-01 5 80409452 80409452 C T RASGRF2 Missense_Mutation p.P728L 0.06 tolerated_low_confidence(0.06) probably_damaging(0.941) TCGA-QQ-A8VF-01 5 80548515 80548515 G A CKMT2 Missense_Mutation p.A52T 0.51 tolerated(0.2) possibly_damaging(0.721) TCGA-QQ-A8VF-01 5 82816745 82816745 G T VCAN Missense_Mutation p.A874S 0.12 tolerated(0.15) benign(0.079) TCGA-QQ-A8VF-01 5 89701580 89701581 - T CETN3 Frame_Shift_Ins p.A64Sfs*2 0.43 TCGA-QQ-A8VF-01 5 93076836 93076836 G A POU5F2 Missense_Mutation p.A145V 0.38 deleterious(0) possibly_damaging(0.541) TCGA-QQ-A8VF-01 6 107011661 107011661 C T AIM1 Missense_Mutation p.T1646M 0.78 deleterious(0.01) probably_damaging(0.976) TCGA-QQ-A8VF-01 6 107981332 107981333 - A SOBP 3'UTR 0.54 TCGA-QQ-A8VF-01 6 108582196 108582196 T C SNX3 5'UTR 0.68 TCGA-QQ-A8VF-01 6 111888840 111888840 C T TRAF3IP2 Missense_Mutation p.R449H 0.69 deleterious(0.02) benign(0.159) TCGA-QQ-A8VF-01 6 11190680 11190680 G T NEDD9 Silent p.A474A 0.31 TCGA-QQ-A8VF-01 6 12164517 12164517 G A HIVEP1 Silent p.T2660T 0.67 TCGA-QQ-A8VF-01 6 123130311 123130311 C G SMPDL3A Missense_Mutation p.L374V 0.09 deleterious(0.04) possibly_damaging(0.744) TCGA-QQ-A8VF-01 6 123892237 123892238 - T TRDN Frame_Shift_Ins p.N21Kfs*49 0.30 TCGA-QQ-A8VF-01 6 129687449 129687449 G A LAMA2 Silent p.P1601P 0.78 TCGA-QQ-A8VF-01 6 133091347 133091347 G A SLC18B1 3'UTR 0.89 TCGA-QQ-A8VF-01 6 136871519 136871519 C T RP3-325F22.5 5'Flank 0.24 TCGA-QQ-A8VF-01 6 138753042 138753042 G A NHSL1 Missense_Mutation p.R818C 0.76 tolerated(0.16) benign(0.017) TCGA-QQ-A8VF-01 6 142409379 142409379 G A NMBR Silent p.A139A 0.85 TCGA-QQ-A8VF-01 6 142732464 142732464 G A GPR126 Silent p.T819T 0.74 TCGA-QQ-A8VF-01 6 148840808 148840808 G A SASH1 Missense_Mutation p.D330N 0.79 tolerated_low_confidence(0.06) benign(0.388) TCGA-QQ-A8VF-01 6 151673902 151673902 A - AKAP12 Frame_Shift_Del p.N1461Mfs*26 0.22 TCGA-QQ-A8VF-01 6 158924743 158924743 G A TULP4 Missense_Mutation p.V1350I 0.85 deleterious_low_confidence(0.01) benign(0.05) TCGA-QQ-A8VF-01 6 159403612 159403612 G A RSPH3 Missense_Mutation p.R343W 0.73 tolerated(0.1) benign(0.168) TCGA-QQ-A8VF-01 6 159654464 159654464 C T FNDC1 Missense_Mutation p.R974C 0.71 deleterious_low_confidence(0) unknown(0) TCGA-QQ-A8VF-01 6 159654574 159654574 C T FNDC1 Silent p.V1010V 0.69 TCGA-QQ-A8VF-01 6 160913954 160913954 C T LPAL2 RNA 0.10 TCGA-QQ-A8VF-01 6 166581239 166581239 G T T 5'UTR 0.38 TCGA-QQ-A8VF-01 6 167416821 167416821 T - FGFR1OP Intron 0.32 TCGA-QQ-A8VF-01 6 167550422 167550422 C T CCR6 Missense_Mutation p.T235M 0.73 tolerated(0.44) benign(0.007) TCGA-QQ-A8VF-01 6 170105985 170105985 C T C6orf120 3'UTR 0.28 TCGA-QQ-A8VF-01 6 25967100 25967100 G A TRIM38 Missense_Mutation p.R117Q 0.72 tolerated(0.06) possibly_damaging(0.908) TCGA-QQ-A8VF-01 6 28212908 28212908 T - ZKSCAN4 Frame_Shift_Del p.T542Lfs*27 0.23 TCGA-QQ-A8VF-01 6 30530461 30530461 G A PRR3 3'UTR 0.90 TCGA-QQ-A8VF-01 6 30552321 30552321 C T ABCF1 Missense_Mutation p.R457C 0.88 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 6 33179659 33179659 C T RING1 Silent p.G333G 0.81 TCGA-QQ-A8VF-01 6 33409389 33409389 G A SYNGAP1 Missense_Mutation p.R716Q 0.75 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VF-01 6 35391745 35391745 G A PPARD Silent p.P149P 0.85 TCGA-QQ-A8VF-01 6 38893844 38893844 G T DNAH8 Missense_Mutation p.G3442V 0.71 possibly_damaging(0.471) TCGA-QQ-A8VF-01 6 39159115 39159115 G A KCNK5 Missense_Mutation p.R351W 0.82 deleterious(0) possibly_damaging(0.614) TCGA-QQ-A8VF-01 6 41566596 41566596 C T FOXP4 Silent p.G655G 0.75 TCGA-QQ-A8VF-01 6 43008060 43008062 CTC - CUL7 In_Frame_Del p.E1460del 0.69 TCGA-QQ-A8VF-01 6 44392245 44392245 C T CDC5L Silent p.A498A 0.90 TCGA-QQ-A8VF-01 6 52271407 52271407 C T PAQR8 3'UTR 0.82 TCGA-QQ-A8VF-01 6 7247316 7247316 G A RREB1 Missense_Mutation p.D1545N 0.79 deleterious(0.02) benign(0.312) TCGA-QQ-A8VF-01 6 74072620 74072620 C T KHDC3L Silent p.F56F 0.81 TCGA-QQ-A8VF-01 6 84884654 84884654 C T KIAA1009 Missense_Mutation p.G606D 0.24 tolerated(0.31) benign(0.009) TCGA-QQ-A8VF-01 6 89891699 89891699 C T GABRR1 Missense_Mutation p.A292T 0.87 tolerated(0.17) probably_damaging(1) TCGA-QQ-A8VF-01 6 91225525 91225525 A - MAP3K7 3'UTR 0.67 TCGA-QQ-A8VF-01 6 91257806 91257806 C T MAP3K7 Missense_Mutation p.R347H 0.83 tolerated(0.21) possibly_damaging(0.861) TCGA-QQ-A8VF-01 6 97002731 97002731 A - UFL1 3'UTR 0.31 TCGA-QQ-A8VF-01 6 97677011 97677011 G A MMS22L Missense_Mutation p.R600W 0.39 deleterious(0.02) possibly_damaging(0.809) TCGA-QQ-A8VF-01 7 100277639 100277639 C - GIGYF1 3'UTR 0.31 TCGA-QQ-A8VF-01 7 100390155 100390155 G A ZAN Missense_Mutation p.R2613H 0.42 unknown(0) TCGA-QQ-A8VF-01 7 100482892 100482892 C T SRRT Silent p.D406D 0.32 TCGA-QQ-A8VF-01 7 100733654 100733654 C T TRIM56 3'UTR 0.46 TCGA-QQ-A8VF-01 7 100802404 100802405 - G AP1S1 Frame_Shift_Ins p.D122Gfs*18 0.33 TCGA-QQ-A8VF-01 7 101891928 101891928 C T CUX1 Missense_Mutation p.P1386L 0.43 tolerated(0.19) unknown(0) TCGA-QQ-A8VF-01 7 102854471 102854471 C T DPY19L2P2 RNA 0.41 TCGA-QQ-A8VF-01 7 105108894 105108894 C T PUS7 Missense_Mutation p.R472H 0.39 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VF-01 7 107872779 107872779 G A NRCAM Missense_Mutation p.R140C 0.44 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VF-01 7 117359663 117359663 C T CTTNBP2 Silent p.T1513T 0.42 TCGA-QQ-A8VF-01 7 124387086 124387086 C T GPR37 Nonsense_Mutation p.W445* 0.25 TCGA-QQ-A8VF-01 7 127017274 127017274 T - ZNF800 Frame_Shift_Del p.K89Nfs*17 0.18 TCGA-QQ-A8VF-01 7 127447556 127447556 C T SND1 Missense_Mutation p.R391C 0.14 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 7 127979336 127979336 T G RBM28 Missense_Mutation p.K106T 0.32 deleterious(0.02) possibly_damaging(0.638) TCGA-QQ-A8VF-01 7 128498059 128498059 C T FLNC Intron 0.14 TCGA-QQ-A8VF-01 7 129929571 129929571 G A CPA2 Missense_Mutation p.R415Q 0.39 tolerated(0.27) benign(0.23) TCGA-QQ-A8VF-01 7 130142557 130142557 C - MEST Frame_Shift_Del p.I276Ffs*11 0.10 TCGA-QQ-A8VF-01 7 134632306 134632306 C - CALD1 Frame_Shift_Del p.Q529Rfs*76 0.27 TCGA-QQ-A8VF-01 7 135412281 135412281 G A SLC13A4 5'UTR 0.43 TCGA-QQ-A8VF-01 7 138529074 138529074 C T KIAA1549 Missense_Mutation p.G1814R 0.15 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 7 140035096 140035096 C T SLC37A3 3'UTR 0.48 TCGA-QQ-A8VF-01 7 142649645 142649645 C T KEL Missense_Mutation p.R385H 0.39 tolerated(0.16) benign(0.053) TCGA-QQ-A8VF-01 7 143039499 143039499 C T CLCN1 Missense_Mutation p.R611C 0.21 tolerated(0.05) benign(0.125) TCGA-QQ-A8VF-01 7 143771679 143771679 G A OR2A25 Missense_Mutation p.V123M 0.26 tolerated(0.05) benign(0.223) TCGA-QQ-A8VF-01 7 143792386 143792386 G A OR2A12 Silent p.L62L 0.18 TCGA-QQ-A8VF-01 7 144364881 144364881 C T TPK1 Intron 0.22 TCGA-QQ-A8VF-01 7 149129613 149129613 G A ZNF777 Missense_Mutation p.R584W 0.84 deleterious(0.02) probably_damaging(0.993) TCGA-QQ-A8VF-01 7 149512310 149512310 C T SSPO RNA 0.70 TCGA-QQ-A8VF-01 7 152551953 152551955 AAC - ACTR3B 3'UTR 0.89 TCGA-QQ-A8VF-01 7 156473974 156473974 G A LMBR1 3'UTR 0.74 TCGA-QQ-A8VF-01 7 157202513 157202513 C T DNAJB6 Missense_Mutation p.A239V 0.80 tolerated(0.13) unknown(0) TCGA-QQ-A8VF-01 7 16445843 16445843 C T ISPD Missense_Mutation p.R126H 0.08 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 7 1786800 1786800 G A ELFN1 3'UTR 0.41 TCGA-QQ-A8VF-01 7 17879561 17879561 G A SNX13 Missense_Mutation p.R410W 0.49 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 7 23750086 23750086 G A STK31 Intron 0.17 TCGA-QQ-A8VF-01 7 26230091 26230091 A - HNRNPA2B1 3'UTR 0.29 TCGA-QQ-A8VF-01 7 26251847 26251848 TA - CBX3 3'UTR 0.09 TCGA-QQ-A8VF-01 7 27150318 27150318 G A HOXA3 5'UTR 0.39 TCGA-QQ-A8VF-01 7 299959 299959 G A FAM20C 3'UTR 0.48 TCGA-QQ-A8VF-01 7 34192938 34192938 G A BMPER 3'UTR 0.49 TCGA-QQ-A8VF-01 7 34978975 34978975 G A DPY19L1 Missense_Mutation p.A553V 0.33 deleterious(0) probably_damaging(0.982) TCGA-QQ-A8VF-01 7 43602605 43602605 A - HECW1 3'UTR 0.30 TCGA-QQ-A8VF-01 7 43918283 43918283 G A URGCP Missense_Mutation p.A260V 0.46 tolerated(0.22) benign(0.006) TCGA-QQ-A8VF-01 7 44578866 44578866 G A NPC1L1 Missense_Mutation p.T377M 0.14 deleterious(0.03) possibly_damaging(0.792) TCGA-QQ-A8VF-01 7 44806214 44806214 G C ZMIZ2 Silent p.G869G 0.04 TCGA-QQ-A8VF-01 7 44921983 44921984 - A PURB 3'UTR 0.18 TCGA-QQ-A8VF-01 7 45007208 45007208 G A MYO1G Missense_Mutation p.S593F 0.40 deleterious(0) possibly_damaging(0.484) TCGA-QQ-A8VF-01 7 47336806 47336806 C T TNS3 Missense_Mutation p.A1184T 0.14 tolerated(0.09) benign(0.195) TCGA-QQ-A8VF-01 7 47408644 47408644 C T TNS3 Silent p.P533P 0.27 TCGA-QQ-A8VF-01 7 5105285 5105285 C T RBAK 3'UTR 0.41 TCGA-QQ-A8VF-01 7 5402298 5402298 G A TNRC18 Missense_Mutation p.R1460C 0.42 possibly_damaging(0.613) TCGA-QQ-A8VF-01 7 5434131 5434131 G A TNRC18 Missense_Mutation p.R95C 0.18 possibly_damaging(0.853) TCGA-QQ-A8VF-01 7 55268880 55268880 G - EGFR Splice_Site p.X984_splice 0.33 TCGA-QQ-A8VF-01 7 64168298 64168298 G A ZNF107 Missense_Mutation p.R539H 0.47 deleterious(0.01) benign(0.001) TCGA-QQ-A8VF-01 7 6431649 6431649 C T RAC1 Missense_Mutation p.R68C 0.06 deleterious(0.03) possibly_damaging(0.832) TCGA-QQ-A8VF-01 7 65445261 65445261 G A GUSB Missense_Mutation p.R116C 0.51 deleterious(0.04) benign(0.005) TCGA-QQ-A8VF-01 7 6731681 6731681 C T ZNF12 Missense_Mutation p.E298K 0.40 tolerated(0.23) benign(0.004) TCGA-QQ-A8VF-01 7 6732101 6732101 C T ZNF12 Missense_Mutation p.G158R 0.36 tolerated(0.53) possibly_damaging(0.452) TCGA-QQ-A8VF-01 7 70880970 70880970 G A WBSCR17 Missense_Mutation p.A229T 0.42 deleterious(0.04) possibly_damaging(0.456) TCGA-QQ-A8VF-01 7 72093976 72093976 G A TYW1B Nonsense_Mutation p.R131* 0.37 TCGA-QQ-A8VF-01 7 72396853 72396853 C T POM121 5'UTR 0.46 TCGA-QQ-A8VF-01 7 72849811 72849811 G A FZD9 Missense_Mutation p.G492R 0.54 tolerated(0.25) benign(0.008) TCGA-QQ-A8VF-01 7 73535510 73535510 G A LIMK1 Missense_Mutation p.R608H 0.34 tolerated(0.56) benign(0.001) TCGA-QQ-A8VF-01 7 73610008 73610012 CTTTA - EIF4H 3'UTR 0.42 TCGA-QQ-A8VF-01 7 75615733 75615733 G A POR Silent p.A659A 0.44 TCGA-QQ-A8VF-01 7 7571210 7571210 C A COL28A1 Missense_Mutation p.K150N 0.09 tolerated(0.15) probably_damaging(0.996) TCGA-QQ-A8VF-01 7 75896618 75896618 C T SRRM3 Silent p.S291S 0.19 TCGA-QQ-A8VF-01 7 77221574 77221574 G A PTPN12 Splice_Site p.X164_splice 0.40 TCGA-QQ-A8VF-01 7 78636413 78636413 C T MAGI2 Silent p.T137T 0.35 TCGA-QQ-A8VF-01 7 82583748 82583748 G A PCLO Missense_Mutation p.T2174I 0.39 unknown(0) TCGA-QQ-A8VF-01 7 86569340 86569340 T - KIAA1324L Frame_Shift_Del p.N278Ifs*47 0.29 TCGA-QQ-A8VF-01 7 87537203 87537203 C T DBF4 Nonsense_Mutation p.R584* 0.40 TCGA-QQ-A8VF-01 7 892562 892562 G A SUN1 Silent p.T342T 0.50 TCGA-QQ-A8VF-01 7 92190529 92190529 T A FAM133B 3'UTR 0.42 TCGA-QQ-A8VF-01 7 92190843 92190843 A - FAM133B 3'UTR 0.26 TCGA-QQ-A8VF-01 7 938356 938356 A G ADAP1 3'UTR 0.23 TCGA-QQ-A8VF-01 7 95045500 95045500 T C PON2 Intron 0.47 TCGA-QQ-A8VF-01 7 95822393 95822393 G A SLC25A13 Missense_Mutation p.R191C 0.48 deleterious(0.05) benign(0.097) TCGA-QQ-A8VF-01 7 99328764 99328764 C T CYP3A7 Missense_Mutation p.R28H 0.27 tolerated(0.2) benign(0) TCGA-QQ-A8VF-01 7 99328765 99328765 G A CYP3A7 Missense_Mutation p.R28C 0.38 deleterious(0.03) benign(0.001) TCGA-QQ-A8VF-01 7 99705701 99705701 G A TAF6 Missense_Mutation p.R539C 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-QQ-A8VF-01 8 102701122 102701122 C T NCALD 3'UTR 0.68 TCGA-QQ-A8VF-01 8 10465448 10465448 C T RP1L1 Missense_Mutation p.G2054S 0.81 unknown(0) TCGA-QQ-A8VF-01 8 116423933 116423933 C T TRPS1 3'UTR 0.50 TCGA-QQ-A8VF-01 8 116680965 116680970 AGAGAA - TRPS1 5'UTR 0.33 TCGA-QQ-A8VF-01 8 12579725 12579725 T - LONRF1 3'UTR 0.70 TCGA-QQ-A8VF-01 8 12942017 12942018 - A DLC1 3'UTR 0.35 TCGA-QQ-A8VF-01 8 130761746 130761746 C T GSDMC Silent p.L413L 0.62 TCGA-QQ-A8VF-01 8 142176456 142176456 C T DENND3 Missense_Mutation p.T494M 0.32 tolerated(0.16) benign(0.003) TCGA-QQ-A8VF-01 8 142517194 142517194 G A MROH5 Missense_Mutation p.S19L 0.30 tolerated_low_confidence(0.35) unknown(0) TCGA-QQ-A8VF-01 8 143562643 143562643 C T BAI1 Silent p.D619D 0.18 TCGA-QQ-A8VF-01 8 144550670 144550670 G A ZC3H3 Missense_Mutation p.R663W 0.36 deleterious(0) probably_damaging(0.957) TCGA-QQ-A8VF-01 8 145003713 145003713 G A PLEC Missense_Mutation p.R1121C 0.15 unknown(0) TCGA-QQ-A8VF-01 8 145113503 145113503 G A OPLAH Missense_Mutation p.R227C 0.31 deleterious(0) probably_damaging(0.989) TCGA-QQ-A8VF-01 8 145150876 145150876 C - CYC1 Frame_Shift_Del p.S93Afs*161 0.37 TCGA-QQ-A8VF-01 8 145617323 145617323 G A ADCK5 Silent p.A376A 0.20 TCGA-QQ-A8VF-01 8 145668639 145668639 C A TONSL Missense_Mutation p.W110C 0.20 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 8 145677930 145677930 C T CYHR1 Missense_Mutation p.R170H 0.54 deleterious(0.03) probably_damaging(0.996) TCGA-QQ-A8VF-01 8 145741464 145741464 G A RECQL4 Missense_Mutation p.R347C 0.24 tolerated(0.17) benign(0.002) TCGA-QQ-A8VF-01 8 146105591 146105591 A - ZNF250 3'UTR 0.55 TCGA-QQ-A8VF-01 8 146108086 146108086 C T ZNF250 Missense_Mutation p.C166Y 0.65 tolerated(1) benign(0.032) TCGA-QQ-A8VF-01 8 146156301 146156301 C T ZNF16 Silent p.T624T 0.38 TCGA-QQ-A8VF-01 8 1624733 1624733 G A DLGAP2 Missense_Mutation p.R666H 0.64 deleterious(0.01) possibly_damaging(0.873) TCGA-QQ-A8VF-01 8 21939823 21939823 C - DMTN 3'UTR 0.47 TCGA-QQ-A8VF-01 8 22165564 22165564 G A PIWIL2 Missense_Mutation p.R555H 0.77 tolerated(0.55) benign(0.003) TCGA-QQ-A8VF-01 8 23708978 23708978 C T STC1 Missense_Mutation p.A110T 0.80 tolerated(1) benign(0.003) TCGA-QQ-A8VF-01 8 27316287 27316287 C T PTK2B 3'UTR 0.91 TCGA-QQ-A8VF-01 8 28625768 28625768 C T INTS9 Silent p.T624T 0.29 TCGA-QQ-A8VF-01 8 30889533 30889533 C T PURG Missense_Mutation p.D256N 0.07 deleterious(0.05) benign(0.027) TCGA-QQ-A8VF-01 8 3165920 3165920 G A CSMD1 Missense_Mutation p.P1246L 0.88 possibly_damaging(0.559) TCGA-QQ-A8VF-01 8 38871781 38871781 A T ADAM9 Intron 0.14 TCGA-QQ-A8VF-01 8 39502945 39502945 C G ADAM18 Missense_Mutation p.T333S 0.14 tolerated(0.37) benign(0.013) TCGA-QQ-A8VF-01 8 41503905 41503905 A T NKX6-3 3'UTR 0.34 TCGA-QQ-A8VF-01 8 52321280 52321280 G A PXDNL Silent p.A968A 0.37 TCGA-QQ-A8VF-01 8 52322001 52322001 C T PXDNL Missense_Mutation p.R728H 0.24 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 8 53092739 53092739 G A ST18 Missense_Mutation p.R74C 0.25 tolerated(0.08) benign(0) TCGA-QQ-A8VF-01 8 55533804 55533804 C T RP1 Missense_Mutation p.T93M 0.21 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 8 62289186 62289186 C T CLVS1 Missense_Mutation p.R160C 0.18 deleterious(0) probably_damaging(0.989) TCGA-QQ-A8VF-01 8 65495771 65495775 TTAAG - BHLHE22 3'UTR 0.44 TCGA-QQ-A8VF-01 8 6669514 6669514 G A XKR5 RNA 0.27 TCGA-QQ-A8VF-01 8 67064713 67064716 CAAA - TRIM55 Frame_Shift_Del p.T364Sfs*46 0.57 TCGA-QQ-A8VF-01 8 68138302 68138302 G A ARFGEF1 Nonsense_Mutation p.R1345* 0.61 TCGA-QQ-A8VF-01 8 70571217 70571217 C T SULF1 3'UTR 0.21 TCGA-QQ-A8VF-01 8 71510176 71510176 G A TRAM1 Missense_Mutation p.A127V 0.20 tolerated(1) benign(0.044) TCGA-QQ-A8VF-01 8 73849587 73849587 C T KCNB2 Missense_Mutation p.T666M 0.26 tolerated_low_confidence(0.27) benign(0.254) TCGA-QQ-A8VF-01 8 75227537 75227537 G A JPH1 Missense_Mutation p.S233L 0.24 deleterious(0.03) possibly_damaging(0.895) TCGA-QQ-A8VF-01 8 75764413 75764413 A - PI15 3'UTR 0.36 TCGA-QQ-A8VF-01 8 75765884 75765884 T A PI15 3'UTR 0.29 TCGA-QQ-A8VF-01 8 77619796 77619796 C T ZFHX4 Missense_Mutation p.P869L 0.36 possibly_damaging(0.859) TCGA-QQ-A8VF-01 8 81432225 81432225 T - ZBTB10 3'UTR 0.52 TCGA-QQ-A8VF-01 8 81553683 81553683 C T ZNF704 Missense_Mutation p.R386Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 8 82606216 82606217 - T SLC10A5 Frame_Shift_Ins p.T331Nfs*3 0.24 TCGA-QQ-A8VF-01 8 82713506 82713506 T - SNX16 3'UTR 0.29 TCGA-QQ-A8VF-01 8 96166402 96166402 A G PLEKHF2 Missense_Mutation p.K44E 0.30 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 9 101304292 101304292 C T GABBR2 Missense_Mutation p.D165N 0.81 tolerated(0.3) benign(0.187) TCGA-QQ-A8VF-01 9 104238757 104238757 G A TMEM246 Silent p.Y206Y 0.76 TCGA-QQ-A8VF-01 9 104449176 104449176 G A GRIN3A Missense_Mutation p.R336W 0.75 deleterious(0.02) possibly_damaging(0.847) TCGA-QQ-A8VF-01 9 109697811 109697811 C T ZNF462 Silent p.H2048H 0.73 TCGA-QQ-A8VF-01 9 121929783 121929783 C T BRINP1 Missense_Mutation p.R622Q 0.80 tolerated(0.06) possibly_damaging(0.885) TCGA-QQ-A8VF-01 9 124543780 124543780 G A DAB2IP Missense_Mutation p.A1090T 0.90 deleterious(0.02) possibly_damaging(0.454) TCGA-QQ-A8VF-01 9 125611801 125611801 T - RC3H2 3'UTR 0.13 TCGA-QQ-A8VF-01 9 126133842 126133842 C T CRB2 Silent p.S807S 0.10 TCGA-QQ-A8VF-01 9 126776322 126776322 C T LHX2 Missense_Mutation p.A68V 0.90 tolerated(0.14) benign(0.185) TCGA-QQ-A8VF-01 9 129642081 129642081 G A ZBTB34 Missense_Mutation p.V131I 0.85 tolerated(0.27) benign(0.004) TCGA-QQ-A8VF-01 9 130165010 130165011 - C SLC2A8 Frame_Shift_Ins p.I237Hfs*4 0.73 TCGA-QQ-A8VF-01 9 130652948 130652948 G A ST6GALNAC6 Silent p.D224D 0.87 TCGA-QQ-A8VF-01 9 130984515 130984515 C T DNM1 Missense_Mutation p.R297W 0.92 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VF-01 9 131112835 131112835 C - SLC27A4 Frame_Shift_Del p.L288Sfs*19 0.44 TCGA-QQ-A8VF-01 9 131371408 131371408 C T SPTAN1 Missense_Mutation p.R1535C 0.88 tolerated(0.19) unknown(0) TCGA-QQ-A8VF-01 9 136227277 136227277 C T SURF2 Silent p.T218T 0.74 TCGA-QQ-A8VF-01 9 138376852 138376852 G A PPP1R26 Missense_Mutation p.A166T 0.75 tolerated(0.67) benign(0.005) TCGA-QQ-A8VF-01 9 139744973 139744973 G A PHPT1 Intron 0.71 TCGA-QQ-A8VF-01 9 139793212 139793212 C - TRAF2 Frame_Shift_Del p.P9Lfs*77 0.29 TCGA-QQ-A8VF-01 9 19520933 19520933 C T SLC24A2 Silent p.V565V 0.45 TCGA-QQ-A8VF-01 9 33441179 33441180 - T AQP3 3'UTR 0.21 TCGA-QQ-A8VF-01 9 34835372 34835372 C - FAM205B RNA 0.26 TCGA-QQ-A8VF-01 9 34971556 34971556 C T KIAA1045 Silent p.G87G 0.83 TCGA-QQ-A8VF-01 9 35092564 35092564 G A PIGO Silent p.I440I 0.16 TCGA-QQ-A8VF-01 9 35450420 35450420 C T ATP8B5P RNA 0.05 TCGA-QQ-A8VF-01 9 35608422 35608422 G A TESK1 Missense_Mutation p.E306K 0.74 deleterious(0.01) possibly_damaging(0.466) TCGA-QQ-A8VF-01 9 37740292 37740292 G A FRMPD1 Silent p.A589A 0.81 TCGA-QQ-A8VF-01 9 4706257 4706257 T - CDC37L1 3'UTR 0.75 TCGA-QQ-A8VF-01 9 72785950 72785950 G A MAMDC2 Intron 0.33 TCGA-QQ-A8VF-01 9 72915033 72915033 C T SMC5 Missense_Mutation p.R461C 0.25 deleterious(0) probably_damaging(0.969) TCGA-QQ-A8VF-01 9 90585537 90585537 C T CDK20 Missense_Mutation p.R170Q 0.77 deleterious(0.01) possibly_damaging(0.563) TCGA-QQ-A8VF-01 9 92003950 92003950 C T SEMA4D Missense_Mutation p.G263S 0.84 deleterious(0) probably_damaging(1) TCGA-QQ-A8VF-01 9 95086319 95086319 C T NOL8 Missense_Mutation p.R42Q 0.87 deleterious(0) probably_damaging(0.992) TCGA-QQ-A8VF-01 X 100178001 100178001 G A XKRX Nonsense_Mutation p.Q129* 0.86 TCGA-QQ-A8VF-01 X 10166025 10166025 C T CLCN4 Missense_Mutation p.A160V 0.89 deleterious(0) probably_damaging(0.975) TCGA-QQ-A8VF-01 X 107148827 107148827 T C MID2 Silent p.F348F 0.04 TCGA-QQ-A8VF-01 X 110494821 110494821 T C CAPN6 Silent p.R283R 0.31 TCGA-QQ-A8VF-01 X 117529303 117529303 A G WDR44 Missense_Mutation p.D350G 0.98 deleterious(0) possibly_damaging(0.768) TCGA-QQ-A8VF-01 X 119438242 119438242 G T TMEM255A Missense_Mutation p.Q55K 0.96 deleterious(0.05) possibly_damaging(0.523) TCGA-QQ-A8VF-01 X 123171416 123171416 C T STAG2 Nonsense_Mutation p.R110* 0.90 TCGA-QQ-A8VF-01 X 123519728 123519728 G A TENM1 Nonsense_Mutation p.R1959* 0.18 TCGA-QQ-A8VF-01 X 12838823 12838823 A G PRPS2 Silent p.G258G 0.28 TCGA-QQ-A8VF-01 X 129519137 129519137 C T GPR119 Silent p.T95T 0.89 TCGA-QQ-A8VF-01 X 129543262 129543262 C T RBMX2 Missense_Mutation p.R69W 0.10 deleterious(0.01) benign(0.235) TCGA-QQ-A8VF-01 X 134481065 134481065 G A ZNF449 Missense_Mutation p.A8T 0.30 tolerated(0.11) possibly_damaging(0.906) TCGA-QQ-A8VF-01 X 1422912 1422912 G T CSF2RA Missense_Mutation p.R382M 0.28 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VF-01 X 148044461 148044461 G A AFF2 Silent p.S969S 0.92 TCGA-QQ-A8VF-01 X 1508323 1508323 C T SLC25A6 Missense_Mutation p.A137T 0.29 deleterious(0.05) benign(0.312) TCGA-QQ-A8VF-01 X 153533438 153533438 G A TKTL1 Intron 0.83 TCGA-QQ-A8VF-01 X 153694760 153694760 G A PLXNA3 Silent p.A947A 0.92 TCGA-QQ-A8VF-01 X 155255057 155255058 - C WASH6P RNA 0.21 TCGA-QQ-A8VF-01 X 21861412 21861412 G A MBTPS2 Missense_Mutation p.R67Q 0.87 tolerated(0.3) benign(0.243) TCGA-QQ-A8VF-01 X 24580403 24580403 G A PCYT1B 3'UTR 0.06 TCGA-QQ-A8VF-01 X 31525503 31525504 - T DMD Frame_Shift_Ins p.I2762Nfs*10 0.48 TCGA-QQ-A8VF-01 X 31792235 31792235 G A DMD Missense_Mutation p.P2462S 0.38 possibly_damaging(0.803) TCGA-QQ-A8VF-01 X 44935952 44935952 A - KDM6A Frame_Shift_Del p.N906Mfs*31 0.79 TCGA-QQ-A8VF-01 X 45017082 45017082 C T CXorf36 Missense_Mutation p.V184M 0.48 tolerated(0.16) possibly_damaging(0.831) TCGA-QQ-A8VF-01 X 47430294 47430294 C T ARAF Silent p.G523G 0.07 TCGA-QQ-A8VF-01 X 48830530 48830530 T - GRIPAP1 3'UTR 0.81 TCGA-QQ-A8VF-01 X 49957716 49957716 T C AKAP4 Missense_Mutation p.K550E 0.84 deleterious(0.04) benign(0.186) TCGA-QQ-A8VF-01 X 57934346 57934346 T - ZXDA 3'UTR 0.47 TCGA-QQ-A8VF-01 X 73045215 73045215 G A XIST RNA 0.94 TCGA-QQ-A8VF-01 X 7811195 7811195 C T VCX 5'UTR 0.54 TCGA-QQ-A8VF-01 X 79281277 79281277 G A TBX22 Splice_Site p.X211_splice 0.13 TCGA-QQ-A8VF-01 Y 23557627 23557627 C T RBMY2EP RNA 0.87 TCGA-QQ-A8VF-01 Y 6932064 6932064 G A TBL1Y Missense_Mutation p.A111T 0.22 tolerated(0.53) benign(0.001) TCGA-QQ-A8VG-01 10 100022501 100022501 C T LOXL4 Silent p.E92E 0.15 TCGA-QQ-A8VG-01 10 102275970 102275970 G A SEC31B Missense_Mutation p.S29F 0.14 deleterious(0) possibly_damaging(0.625) TCGA-QQ-A8VG-01 10 105350142 105350142 G A NEURL1 3'UTR 0.12 TCGA-QQ-A8VG-01 10 113915640 113915640 T C GPAM Missense_Mutation p.R765G 0.18 tolerated(0.25) possibly_damaging(0.632) TCGA-QQ-A8VG-01 10 123845786 123845786 C T TACC2 Silent p.S1257S 0.15 TCGA-QQ-A8VG-01 10 123846263 123846263 C T TACC2 Silent p.F1416F 0.16 TCGA-QQ-A8VG-01 10 123987504 123987504 C T TACC2 Missense_Mutation p.P2626L 0.17 benign(0.101) TCGA-QQ-A8VG-01 10 124008163 124008163 G A TACC2 Missense_Mutation p.E2800K 0.32 probably_damaging(0.982) TCGA-QQ-A8VG-01 10 124389895 124389895 G A DMBT1 Missense_Mutation p.D1843N 0.20 tolerated(0.38) probably_damaging(0.967) TCGA-QQ-A8VG-01 10 124600736 124600736 C T CUZD1 Missense_Mutation p.R64K 0.16 tolerated(0.33) benign(0.092) TCGA-QQ-A8VG-01 10 27822910 27822910 C T RAB18 Silent p.S144S 0.20 TCGA-QQ-A8VG-01 10 37430649 37430649 G A ANKRD30A Missense_Mutation p.G219E 0.19 tolerated(0.47) benign(0.118) TCGA-QQ-A8VG-01 10 49459800 49459800 C T FRMPD2 Intron 0.14 TCGA-QQ-A8VG-01 10 5037628 5037628 G A AKR1C2 Silent p.A243A 0.11 TCGA-QQ-A8VG-01 10 50857626 50857626 G A CHAT Nonsense_Mutation p.W485* 0.24 TCGA-QQ-A8VG-01 10 50952755 50952755 C T OGDHL Missense_Mutation p.G558D 0.11 tolerated(0.54) benign(0.002) TCGA-QQ-A8VG-01 10 51246208 51246208 G A AGAP8 Missense_Mutation p.R68C 0.45 tolerated_low_confidence(0.08) benign(0.002) TCGA-QQ-A8VG-01 10 5144725 5144725 C T AKR1C3 Silent p.A243A 0.27 TCGA-QQ-A8VG-01 10 61551815 61551815 G A CCDC6 3'UTR 0.10 TCGA-QQ-A8VG-01 10 6540470 6540470 G A PRKCQ Nonsense_Mutation p.Q144* 0.20 TCGA-QQ-A8VG-01 10 7679438 7679438 C T ITIH5 Silent p.E135E 0.19 TCGA-QQ-A8VG-01 10 81275055 81275055 C T EIF5AL1 3'UTR 0.30 TCGA-QQ-A8VG-01 10 82298269 82298269 G A SH2D4B Missense_Mutation p.R61Q 0.14 tolerated(0.21) benign(0.005) TCGA-QQ-A8VG-01 10 95422806 95422806 G A PDE6C Missense_Mutation p.E797K 0.19 tolerated(0.15) probably_damaging(0.996) TCGA-QQ-A8VG-01 10 96495020 96495020 G A CYP2C18 Missense_Mutation p.G431E 0.13 deleterious(0.01) possibly_damaging(0.901) TCGA-QQ-A8VG-01 10 96609693 96609693 C T CYP2C19 Missense_Mutation p.S390F 0.15 tolerated(0.4) possibly_damaging(0.86) TCGA-QQ-A8VG-01 10 97951726 97951726 C T BLNK 3'UTR 0.15 TCGA-QQ-A8VG-01 10 98105735 98105735 C T OPALIN Missense_Mutation p.G130E 0.20 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-QQ-A8VG-01 10 99161115 99161115 C T RRP12 5'Flank 0.13 TCGA-QQ-A8VG-01 11 101359678 101359678 G A TRPC6 Missense_Mutation p.P428L 0.27 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VG-01 11 10597548 10597548 C T MRVI1 3'UTR 0.17 TCGA-QQ-A8VG-01 11 107578584 107578584 G A SLN Missense_Mutation p.L25F 0.15 deleterious_low_confidence(0) possibly_damaging(0.849) TCGA-QQ-A8VG-01 11 108159767 108159767 C T ATM Silent p.A1391A 0.20 TCGA-QQ-A8VG-01 11 1084347 1084347 G A MUC2 Missense_Mutation p.D827N 0.13 possibly_damaging(0.57) TCGA-QQ-A8VG-01 11 111637118 111637118 C T PPP2R1B 5'Flank 0.15 TCGA-QQ-A8VG-01 11 111752080 111752080 C T C11orf1 Intron 0.16 TCGA-QQ-A8VG-01 11 111904147 111904147 C T DLAT Missense_Mutation p.S227F 0.16 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 11 113270707 113270707 C T ANKK1 Silent p.F672F 0.16 TCGA-QQ-A8VG-01 11 118348798 118348798 C T KMT2A Nonsense_Mutation p.R1151* 0.15 TCGA-QQ-A8VG-01 11 118472953 118472953 C T ARCN1 3'UTR 0.17 TCGA-QQ-A8VG-01 11 124626140 124626140 C T ESAM Silent p.Q190Q 0.16 TCGA-QQ-A8VG-01 11 124636673 124636673 G A MSANTD2 3'UTR 0.16 TCGA-QQ-A8VG-01 11 18723957 18723957 C G TMEM86A 3'UTR 0.21 TCGA-QQ-A8VG-01 11 18723959 18723959 C T TMEM86A 3'UTR 0.20 TCGA-QQ-A8VG-01 11 18731163 18731163 C T IGSF22 Nonsense_Mutation p.W923* 0.12 TCGA-QQ-A8VG-01 11 1955791 1955791 G A TNNT3 Missense_Mutation p.G166S 0.15 deleterious(0.02) probably_damaging(0.976) TCGA-QQ-A8VG-01 11 20673895 20673895 C T SLC6A5 Missense_Mutation p.P711S 0.13 deleterious(0) possibly_damaging(0.627) TCGA-QQ-A8VG-01 11 22399270 22399270 G A SLC17A6 Missense_Mutation p.R578Q 0.21 tolerated(0.47) benign(0.001) TCGA-QQ-A8VG-01 11 285284 285284 G A NLRP6 Missense_Mutation p.E887K 0.11 tolerated_low_confidence(0.26) benign(0.004) TCGA-QQ-A8VG-01 11 34180930 34180930 G A ABTB2 Silent p.F870F 0.21 TCGA-QQ-A8VG-01 11 45903928 45903928 C T CRY2 3'UTR 0.28 TCGA-QQ-A8VG-01 11 46333926 46333926 G A CREB3L1 Silent p.R268R 0.18 TCGA-QQ-A8VG-01 11 48266853 48266853 C T OR4X2 Silent p.S66S 0.14 TCGA-QQ-A8VG-01 11 4976386 4976386 G A OR51A2 Silent p.V186V 0.19 TCGA-QQ-A8VG-01 11 55065005 55065005 C T TRIM51HP RNA 0.17 TCGA-QQ-A8VG-01 11 55322124 55322124 C T OR4C15 Silent p.F114F 0.21 TCGA-QQ-A8VG-01 11 55563415 55563415 C T OR5D14 Silent p.I128I 0.17 TCGA-QQ-A8VG-01 11 55927455 55927455 G A OR8K5 Silent p.F113F 0.17 TCGA-QQ-A8VG-01 11 58035306 58035306 G A OR10W1 Missense_Mutation p.P9S 0.17 tolerated(1) probably_damaging(1) TCGA-QQ-A8VG-01 11 58190110 58190110 G A OR5B2 Missense_Mutation p.L209F 0.18 tolerated_low_confidence(0.11) benign(0.232) TCGA-QQ-A8VG-01 11 59283138 59283138 C T OR4D9 Silent p.F251F 0.19 TCGA-QQ-A8VG-01 11 6007673 6007673 C T OR52L1 Missense_Mutation p.G163E 0.16 deleterious(0) probably_damaging(0.984) TCGA-QQ-A8VG-01 11 61584070 61584070 C T FADS1 Missense_Mutation p.G111E 0.14 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VG-01 11 6232180 6232180 G A C11orf42 Missense_Mutation p.A304T 0.18 tolerated_low_confidence(0.14) benign(0.009) TCGA-QQ-A8VG-01 11 62568587 62568587 G A NXF1 Silent p.I295I 0.33 TCGA-QQ-A8VG-01 11 62782350 62782350 C T SLC22A8 Silent p.P27P 0.28 TCGA-QQ-A8VG-01 11 65429171 65429171 G A RELA Missense_Mutation p.R108C 0.18 deleterious(0) probably_damaging(0.916) TCGA-QQ-A8VG-01 11 65561400 65561400 G A OVOL1 Intron 0.24 TCGA-QQ-A8VG-01 11 6738447 6738447 G A GVINP1 RNA 0.16 TCGA-QQ-A8VG-01 11 7324559 7324559 G A SYT9 Silent p.Q145Q 0.16 TCGA-QQ-A8VG-01 11 74413853 74413853 C T CHRDL2 Nonsense_Mutation p.W369* 0.13 TCGA-QQ-A8VG-01 11 74976969 74976969 G A ARRB1 3'UTR 0.27 TCGA-QQ-A8VG-01 11 77378474 77378474 G A RSF1 Nonsense_Mutation p.R1272* 0.16 TCGA-QQ-A8VG-01 11 8457588 8457588 G A STK33 Missense_Mutation p.S349F 0.21 deleterious(0.02) benign(0.078) TCGA-QQ-A8VG-01 11 89177369 89177369 G A NOX4 Silent p.A127A 0.15 TCGA-QQ-A8VG-01 11 89223772 89223772 T A NOX4 Intron 0.20 TCGA-QQ-A8VG-01 11 93844861 93844861 G A HEPHL1 Missense_Mutation p.R1094Q 0.10 tolerated(0.59) benign(0.001) TCGA-QQ-A8VG-01 12 102796307 102796307 C T IGF1 Missense_Mutation p.G131E 0.21 deleterious(0.01) benign(0.085) TCGA-QQ-A8VG-01 12 108685801 108685801 G A CMKLR1 Silent p.P313P 0.16 TCGA-QQ-A8VG-01 12 108685802 108685802 G A CMKLR1 Missense_Mutation p.P313L 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 12 108985691 108985691 C T TMEM119 Missense_Mutation p.A157T 0.16 tolerated(0.06) benign(0.184) TCGA-QQ-A8VG-01 12 111087228 111087228 C T HVCN1 Missense_Mutation p.G270D 0.14 tolerated(0.14) benign(0.151) TCGA-QQ-A8VG-01 12 112888139 112888139 C T PTPN11 Missense_Mutation p.T52I 0.11 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VG-01 12 112926909 112926909 A T PTPN11 Missense_Mutation p.Q510L 0.24 deleterious(0) possibly_damaging(0.827) TCGA-QQ-A8VG-01 12 117217132 117217132 C T RNFT2 Silent p.I287I 0.22 TCGA-QQ-A8VG-01 12 120882635 120882635 A T TRIAP1 3'UTR 0.26 TCGA-QQ-A8VG-01 12 121442845 121442845 G A C12orf43 Missense_Mutation p.S138F 0.20 deleterious(0.02) benign(0.42) TCGA-QQ-A8VG-01 12 122498349 122498349 C T BCL7A 3'UTR 0.24 TCGA-QQ-A8VG-01 12 124343772 124343772 G A DNAH10 Missense_Mutation p.G2118S 0.16 probably_damaging(0.981) TCGA-QQ-A8VG-01 12 124363844 124363844 G A DNAH10 Nonsense_Mutation p.W2684* 0.12 TCGA-QQ-A8VG-01 12 127229561 127229561 G A LINC00943 RNA 0.19 TCGA-QQ-A8VG-01 12 128899972 128899972 G A TMEM132C Missense_Mutation p.E261K 0.11 tolerated(0.41) benign(0.189) TCGA-QQ-A8VG-01 12 132402037 132402037 C T ULK1 Missense_Mutation p.T755I 0.12 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VG-01 12 132589042 132589042 C T EP400NL Intron 0.25 TCGA-QQ-A8VG-01 12 13906442 13906442 G A GRIN2B Silent p.F273F 0.20 TCGA-QQ-A8VG-01 12 18715756 18715756 C T PIK3C2G Missense_Mutation p.S1196F 0.17 tolerated(0.66) possibly_damaging(0.463) TCGA-QQ-A8VG-01 12 18852761 18852761 C T PLCZ1 Missense_Mutation p.E381K 0.18 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VG-01 12 33538212 33538212 C T SYT10 Silent p.L364L 0.16 TCGA-QQ-A8VG-01 12 44917119 44917119 C T NELL2 Silent p.Q701Q 0.28 TCGA-QQ-A8VG-01 12 47470137 47470137 G A AMIGO2 3'UTR 0.22 TCGA-QQ-A8VG-01 12 52699530 52699530 G A KRT86 Missense_Mutation p.M328I 0.17 tolerated(0.2) benign(0.013) TCGA-QQ-A8VG-01 12 52702068 52702068 C T KRT86 Intron 0.16 TCGA-QQ-A8VG-01 12 52826886 52826886 C T KRT75 Missense_Mutation p.E217K 0.21 deleterious(0.03) possibly_damaging(0.595) TCGA-QQ-A8VG-01 12 53800456 53800456 G A SP1 Missense_Mutation p.S588N 0.17 tolerated(0.17) possibly_damaging(0.483) TCGA-QQ-A8VG-01 12 55422691 55422691 G A NEUROD4 3'UTR 0.10 TCGA-QQ-A8VG-01 12 55726200 55726200 C T OR6C3 Missense_Mutation p.S239F 0.18 deleterious_low_confidence(0) benign(0.167) TCGA-QQ-A8VG-01 12 67699121 67699121 C T CAND1 Missense_Mutation p.S558L 0.10 tolerated(0.31) benign(0.001) TCGA-QQ-A8VG-01 12 69969891 69969891 T C FRS2 3'UTR 0.27 TCGA-QQ-A8VG-01 12 70824430 70824430 T C KCNMB4 Silent p.S210S 0.19 TCGA-QQ-A8VG-01 12 70988263 70988263 C T PTPRB Nonsense_Mutation p.W500* 0.13 TCGA-QQ-A8VG-01 12 7169821 7169821 G A C1S Silent p.E16E 0.27 TCGA-QQ-A8VG-01 12 78392250 78392250 G A NAV3 Missense_Mutation p.E292K 0.12 tolerated(0.07) possibly_damaging(0.538) TCGA-QQ-A8VG-01 12 89982723 89982723 G A ATP2B1 3'UTR 0.19 TCGA-QQ-A8VG-01 12 9225050 9225050 C T A2M Silent p.K1336K 0.19 TCGA-QQ-A8VG-01 13 113513704 113513704 C T ATP11A Intron 0.32 TCGA-QQ-A8VG-01 13 27847334 27847334 C T RASL11A Silent p.I144I 0.33 TCGA-QQ-A8VG-01 13 33628363 33628363 G A KL Missense_Mutation p.D427N 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-QQ-A8VG-01 13 38137332 38137332 T A POSTN 3'UTR 0.40 TCGA-QQ-A8VG-01 13 50594376 50594376 G A KCNRG Missense_Mutation p.R202Q 0.33 tolerated(0.09) benign(0.042) TCGA-QQ-A8VG-01 13 97639515 97639515 G A OXGR1 Missense_Mutation p.P167S 0.28 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 14 100118632 100118632 G A HHIPL1 Silent p.G109G 0.12 TCGA-QQ-A8VG-01 14 100119155 100119155 G A HHIPL1 Missense_Mutation p.E284K 0.20 deleterious(0) probably_damaging(0.974) TCGA-QQ-A8VG-01 14 101350316 101350316 G A RTL1 Silent p.F270F 0.24 TCGA-QQ-A8VG-01 14 103394780 103394780 G A AMN Silent p.G75G 0.13 TCGA-QQ-A8VG-01 14 105180850 105180850 C T INF2 Silent p.S1117S 0.13 TCGA-QQ-A8VG-01 14 106780601 106780601 G A IGHV4-28 Missense_Mutation p.T88I 0.19 deleterious(0.02) benign(0.212) TCGA-QQ-A8VG-01 14 107034960 107034960 G A IGHV5-51 Silent p.S40S 0.19 TCGA-QQ-A8VG-01 14 20502851 20502851 G A OR4K13 Missense_Mutation p.L23F 0.13 deleterious(0.01) benign(0.027) TCGA-QQ-A8VG-01 14 20915590 20915590 A G OSGEP Missense_Mutation p.V320A 0.20 deleterious(0.04) benign(0.06) TCGA-QQ-A8VG-01 14 23421835 23421835 G A HAUS4 Missense_Mutation p.P38L 0.19 tolerated(0.05) possibly_damaging(0.704) TCGA-QQ-A8VG-01 14 23899003 23899003 C T MYH7 Silent p.A373A 0.21 TCGA-QQ-A8VG-01 14 36340521 36340521 C T BRMS1L 3'UTR 0.09 TCGA-QQ-A8VG-01 14 36840694 36840694 G A DPPA3P2 RNA 0.17 TCGA-QQ-A8VG-01 14 39304592 39304592 G A LINC00639 RNA 0.24 TCGA-QQ-A8VG-01 14 61997257 61997257 G A RP11-47I22.4 Missense_Mutation p.D74N 0.13 tolerated(0.05) possibly_damaging(0.654) TCGA-QQ-A8VG-01 14 69521402 69521402 G A DCAF5 Silent p.L667L 0.15 TCGA-QQ-A8VG-01 14 73409712 73409712 G A DCAF4 Missense_Mutation p.E148K 0.21 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 14 74826610 74826610 C T VRTN 3'UTR 0.18 TCGA-QQ-A8VG-01 14 75266069 75266069 C T YLPM1 Nonsense_Mutation p.R1357* 0.21 TCGA-QQ-A8VG-01 14 89202819 89202819 C T EML5 Missense_Mutation p.R313K 0.14 tolerated(0.39) benign(0.196) TCGA-QQ-A8VG-01 14 92403475 92403475 C T FBLN5 Silent p.G65G 0.13 TCGA-QQ-A8VG-01 14 96129896 96129896 C T TCL6 RNA 0.23 TCGA-QQ-A8VG-01 14 96768417 96768417 G A ATG2B Missense_Mutation p.P1689L 0.18 deleterious(0) probably_damaging(0.987) TCGA-QQ-A8VG-01 14 99636639 99636639 A G BCL11B 3'UTR 0.17 TCGA-QQ-A8VG-01 15 102215839 102215839 G A TARSL2 Silent p.F584F 0.12 TCGA-QQ-A8VG-01 15 20739961 20739961 C T GOLGA6L6 Missense_Mutation p.E597K 0.27 unknown(0) TCGA-QQ-A8VG-01 15 21051205 21051205 C T POTEB2 Missense_Mutation p.E419K 0.12 tolerated(0.07) benign(0) TCGA-QQ-A8VG-01 15 24926018 24926018 G A NPAP1 3'UTR 0.30 TCGA-QQ-A8VG-01 15 25490553 25490553 C T SNORD115-40 3'Flank 0.18 TCGA-QQ-A8VG-01 15 31670093 31670093 C T KLF13 3'UTR 0.24 TCGA-QQ-A8VG-01 15 34109128 34109128 C T RYR3 Missense_Mutation p.S3523F 0.08 benign(0.14) TCGA-QQ-A8VG-01 15 40754377 40754377 C T BAHD1 Missense_Mutation p.P567S 0.08 tolerated(0.79) possibly_damaging(0.87) TCGA-QQ-A8VG-01 15 41064513 41064513 G A C15orf62 3'UTR 0.20 TCGA-QQ-A8VG-01 15 41228731 41228731 C T DLL4 Missense_Mutation p.R516C 0.10 deleterious(0.02) possibly_damaging(0.556) TCGA-QQ-A8VG-01 15 44705779 44705779 C T CASC4 3'UTR 0.14 TCGA-QQ-A8VG-01 15 53994475 53994475 C T WDR72 Silent p.S475S 0.16 TCGA-QQ-A8VG-01 15 57574769 57574769 C T TCF12 Missense_Mutation p.P702L 0.17 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 15 57821011 57821011 G A CGNL1 Missense_Mutation p.E1067K 0.12 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 15 63363846 63363846 A T TPM1 3'UTR 0.41 TCGA-QQ-A8VG-01 15 65499297 65499297 C T CILP Missense_Mutation p.D83N 0.12 tolerated(0.23) benign(0.403) TCGA-QQ-A8VG-01 15 68609615 68609615 C T ITGA11 Silent p.R901R 0.12 TCGA-QQ-A8VG-01 15 70349945 70349945 G A TLE3 Silent p.F371F 0.17 TCGA-QQ-A8VG-01 15 74888705 74888705 C T ARID3B 3'UTR 0.15 TCGA-QQ-A8VG-01 15 75042719 75042719 G A CYP1A2 Missense_Mutation p.D214N 0.15 deleterious(0.05) benign(0.018) TCGA-QQ-A8VG-01 15 75499448 75499448 C T C15orf39 Silent p.P353P 0.14 TCGA-QQ-A8VG-01 15 82336250 82336250 G A MEX3B Missense_Mutation p.P321S 0.16 tolerated(0.71) possibly_damaging(0.696) TCGA-QQ-A8VG-01 15 83430979 83430979 C T FSD2 Nonsense_Mutation p.W624* 0.28 TCGA-QQ-A8VG-01 15 89382065 89382065 A T ACAN Missense_Mutation p.E81V 0.30 deleterious(0.04) unknown(0) TCGA-QQ-A8VG-01 16 1270765 1270765 G A CACNA1H Missense_Mutation p.G2278E 0.20 deleterious_low_confidence(0.03) benign(0.025) TCGA-QQ-A8VG-01 16 1536178 1536178 G A PTX4 Missense_Mutation p.S395F 0.21 deleterious(0.05) possibly_damaging(0.709) TCGA-QQ-A8VG-01 16 15688601 15688601 C G KIAA0430 3'UTR 0.21 TCGA-QQ-A8VG-01 16 19020580 19020580 A G TMC7 Missense_Mutation p.R52G 0.24 deleterious(0) benign(0.415) TCGA-QQ-A8VG-01 16 19729679 19729679 C T IQCK Silent p.S17S 0.11 TCGA-QQ-A8VG-01 16 20451919 20451919 G A ACSM5 3'UTR 0.12 TCGA-QQ-A8VG-01 16 22157664 22157664 C T VWA3A Silent p.S946S 0.19 TCGA-QQ-A8VG-01 16 2855019 2855019 C T PRSS41 RNA 0.22 TCGA-QQ-A8VG-01 16 28914189 28914189 C T ATP2A1 Silent p.L901L 0.15 TCGA-QQ-A8VG-01 16 30392489 30392489 C T SEPT1 Missense_Mutation p.D178N 0.17 probably_damaging(0.999) TCGA-QQ-A8VG-01 16 31371384 31371384 C T ITGAX Silent p.V235V 0.12 TCGA-QQ-A8VG-01 16 3406411 3406411 G A OR2C1 Silent p.V157V 0.14 TCGA-QQ-A8VG-01 16 3486648 3486648 G A ZNF597 Missense_Mutation p.P351S 0.17 tolerated(0.78) benign(0.02) TCGA-QQ-A8VG-01 16 3614547 3614547 G A NLRC3 Missense_Mutation p.L178F 0.38 deleterious(0) probably_damaging(0.925) TCGA-QQ-A8VG-01 16 48145570 48145570 G A ABCC12 Missense_Mutation p.P710S 0.10 tolerated(0.1) benign(0.01) TCGA-QQ-A8VG-01 16 50325793 50325793 C T ADCY7 Silent p.V174V 0.21 TCGA-QQ-A8VG-01 16 5112553 5112553 C T C16orf89 Silent p.E77E 0.18 TCGA-QQ-A8VG-01 16 51175382 51175382 G A SALL1 Missense_Mutation p.R251C 0.14 tolerated(0.06) probably_damaging(0.912) TCGA-QQ-A8VG-01 16 58312541 58312541 G T CCDC113 Missense_Mutation p.E349D 0.19 deleterious(0.02) probably_damaging(0.968) TCGA-QQ-A8VG-01 16 58545342 58545342 G A NDRG4 Missense_Mutation p.M346I 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-QQ-A8VG-01 16 66949219 66949219 G A CDH16 Missense_Mutation p.L163F 0.26 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 16 67864385 67864385 G A CENPT Missense_Mutation p.S257F 0.21 tolerated(0.08) possibly_damaging(0.606) TCGA-QQ-A8VG-01 16 68405025 68405025 G A SMPD3 Missense_Mutation p.P354S 0.27 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 16 69681482 69681482 G A NFAT5 Missense_Mutation p.G269R 0.10 probably_damaging(0.92) TCGA-QQ-A8VG-01 16 69732173 69732173 G A NFAT5 3'UTR 0.16 TCGA-QQ-A8VG-01 16 7102075 7102075 G A RBFOX1 Translation_Start_Site p.M1? 0.18 tolerated_low_confidence(0.07) benign(0.002) TCGA-QQ-A8VG-01 16 775537 775537 C T CCDC78 Missense_Mutation p.G104E 0.12 tolerated(0.06) probably_damaging(1) TCGA-QQ-A8VG-01 16 89114070 89114070 C T CTD-2555A7.2 RNA 0.25 TCGA-QQ-A8VG-01 17 10398388 10398388 C T MYH1 Missense_Mutation p.E1776K 0.24 deleterious(0.03) benign(0.181) TCGA-QQ-A8VG-01 17 16593774 16593774 C T CCDC144A Silent p.V20V 0.10 TCGA-QQ-A8VG-01 17 18059639 18059639 G A MYO15A Missense_Mutation p.E2864K 0.11 unknown(0) TCGA-QQ-A8VG-01 17 18281096 18281096 G A EVPLL 5'UTR 0.21 TCGA-QQ-A8VG-01 17 21318690 21318690 C T KCNJ12 Silent p.I12I 0.07 TCGA-QQ-A8VG-01 17 26107795 26107795 G A NOS2 Silent p.P334P 0.22 TCGA-QQ-A8VG-01 17 26800817 26800817 C T SLC13A2 Silent p.I29I 0.17 TCGA-QQ-A8VG-01 17 27423801 27423801 C T MYO18A Missense_Mutation p.E1455K 0.29 deleterious(0.02) possibly_damaging(0.61) TCGA-QQ-A8VG-01 17 28405481 28405481 C T EFCAB5 Silent p.L996L 0.18 TCGA-QQ-A8VG-01 17 29576111 29576111 C T NF1 Nonsense_Mutation p.R1362* 0.25 TCGA-QQ-A8VG-01 17 29844724 29844724 C T RAB11FIP4 Missense_Mutation p.P131L 0.20 tolerated(0.06) benign(0.004) TCGA-QQ-A8VG-01 17 30202316 30202316 G A UTP6 Silent p.I414I 0.15 TCGA-QQ-A8VG-01 17 33448323 33448323 C T RAD51L3-RFFL 5'UTR 0.21 TCGA-QQ-A8VG-01 17 36287676 36287676 C T TBC1D3F Missense_Mutation p.R69W 0.20 tolerated(0.1) benign(0.014) TCGA-QQ-A8VG-01 17 36499244 36499244 T G GPR179 Missense_Mutation p.R143S 0.14 deleterious(0) benign(0.094) TCGA-QQ-A8VG-01 17 39262482 39262482 G C KRTAP4-9 3'UTR 0.25 TCGA-QQ-A8VG-01 17 39503390 39503390 G A KRT33A Silent p.L225L 0.18 TCGA-QQ-A8VG-01 17 39847893 39847893 G A EIF1 3'UTR 0.12 TCGA-QQ-A8VG-01 17 39968817 39968817 C T LEPREL4 5'UTR 0.36 TCGA-QQ-A8VG-01 17 4173310 4173310 G A UBE2G1 3'UTR 0.25 TCGA-QQ-A8VG-01 17 46058895 46058895 C T CDK5RAP3 3'UTR 0.17 TCGA-QQ-A8VG-01 17 48695414 48695414 G A CACNA1G Silent p.G1744G 0.20 TCGA-QQ-A8VG-01 17 48745306 48745306 C T ABCC3 Missense_Mutation p.S573F 0.14 deleterious(0) probably_damaging(0.982) TCGA-QQ-A8VG-01 17 56084431 56084431 A G SRSF1 Missense_Mutation p.L23S 0.20 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 17 56084432 56084432 A T SRSF1 Missense_Mutation p.L23I 0.19 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VG-01 17 60352924 60352924 C T TBC1D3P2 RNA 0.15 TCGA-QQ-A8VG-01 17 6328721 6328721 G A AIPL1 3'UTR 0.14 TCGA-QQ-A8VG-01 17 66041988 66041988 C T KPNA2 Missense_Mutation p.S483F 0.17 tolerated(0.05) benign(0.118) TCGA-QQ-A8VG-01 17 7253484 7253484 G A ACAP1 Missense_Mutation p.G667E 0.17 deleterious(0.04) benign(0.289) TCGA-QQ-A8VG-01 17 72838646 72838646 T C GRIN2C Silent p.V1210V 0.17 TCGA-QQ-A8VG-01 17 77769185 77769185 C T CBX8 Missense_Mutation p.S140N 0.17 tolerated(0.07) benign(0.005) TCGA-QQ-A8VG-01 17 79612351 79612351 C T TSPAN10 Silent p.L124L 0.20 TCGA-QQ-A8VG-01 17 913999 913999 G C ABR Missense_Mutation p.R736G 0.21 tolerated(0.09) benign(0.111) TCGA-QQ-A8VG-01 18 11853506 11853506 C T CHMP1B 3'UTR 0.12 TCGA-QQ-A8VG-01 18 28588263 28588263 G A DSC3 Missense_Mutation p.P498S 0.23 deleterious(0) possibly_damaging(0.886) TCGA-QQ-A8VG-01 18 31324429 31324429 C T ASXL3 Silent p.F1539F 0.25 TCGA-QQ-A8VG-01 18 31432761 31432761 G A NOL4 3'UTR 0.18 TCGA-QQ-A8VG-01 18 43669827 43669827 G A ATP5A1 Missense_Mutation p.R149C 0.07 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-QQ-A8VG-01 18 46645158 46645158 G A DYM Nonsense_Mutation p.R568* 0.23 TCGA-QQ-A8VG-01 18 50683867 50683867 G A DCC Missense_Mutation p.R468K 0.19 tolerated(1) benign(0.002) TCGA-QQ-A8VG-01 18 50866177 50866177 C T DCC Silent p.I753I 0.20 TCGA-QQ-A8VG-01 18 52921843 52921843 G A TCF4 Missense_Mutation p.P514L 0.10 deleterious(0.02) benign(0.019) TCGA-QQ-A8VG-01 18 55028827 55028827 G A ST8SIA3 3'UTR 0.11 TCGA-QQ-A8VG-01 18 9815151 9815151 G A RAB31 Silent p.L104L 0.09 TCGA-QQ-A8VG-01 19 12867020 12867020 G A BEST2 Nonsense_Mutation p.W338* 0.19 TCGA-QQ-A8VG-01 19 16136399 16136399 T C LINC00661 RNA 0.27 TCGA-QQ-A8VG-01 19 17025498 17025498 G A CPAMD8 Missense_Mutation p.A1299V 0.20 tolerated(0.07) possibly_damaging(0.584) TCGA-QQ-A8VG-01 19 1828546 1828546 G A REXO1 Missense_Mutation p.P81L 0.17 deleterious(0.02) benign(0.175) TCGA-QQ-A8VG-01 19 18576666 18576666 G A ELL Silent p.S82S 0.20 TCGA-QQ-A8VG-01 19 1980163 1980163 C T CSNK1G2 Silent p.F403F 0.15 TCGA-QQ-A8VG-01 19 23541753 23541753 G A ZNF91 3'UTR 0.10 TCGA-QQ-A8VG-01 19 2997830 2997830 G A TLE2 3'UTR 0.11 TCGA-QQ-A8VG-01 19 31039417 31039417 C T ZNF536 Missense_Mutation p.S964F 0.21 deleterious_low_confidence(0.02) benign(0.068) TCGA-QQ-A8VG-01 19 35169656 35169656 C T ZNF302 5'UTR 0.15 TCGA-QQ-A8VG-01 19 35899507 35899507 G A AC002511.1 RNA 0.21 TCGA-QQ-A8VG-01 19 36207192 36207192 C G ZBTB32 Silent p.V394V 0.16 TCGA-QQ-A8VG-01 19 3747891 3747891 G A TJP3 Missense_Mutation p.E817K 0.18 deleterious(0) probably_damaging(0.988) TCGA-QQ-A8VG-01 19 39759385 39759385 C T IFNL2 Missense_Mutation p.P27S 0.18 tolerated(0.07) probably_damaging(0.964) TCGA-QQ-A8VG-01 19 39819113 39819113 G A GMFG 3'UTR 0.11 TCGA-QQ-A8VG-01 19 40408491 40408491 C T FCGBP Missense_Mutation p.E1450K 0.19 probably_damaging(0.93) TCGA-QQ-A8VG-01 19 40740986 40740986 G A AKT2 Silent p.T444T 0.13 TCGA-QQ-A8VG-01 19 41092741 41092741 C T SHKBP1 Silent p.I409I 0.17 TCGA-QQ-A8VG-01 19 42125953 42125953 C T CEACAM4 Intron 0.15 TCGA-QQ-A8VG-01 19 42351926 42351926 G A DMRTC2 Missense_Mutation p.G116E 0.18 tolerated(1) benign(0.017) TCGA-QQ-A8VG-01 19 43680253 43680253 C T PSG5 Missense_Mutation p.E160K 0.17 deleterious(0.02) possibly_damaging(0.816) TCGA-QQ-A8VG-01 19 43762226 43762226 G A PSG9 Intron 0.17 TCGA-QQ-A8VG-01 19 46308052 46308052 C T RSPH6A Missense_Mutation p.E371K 0.12 tolerated(0.26) benign(0.444) TCGA-QQ-A8VG-01 19 48801542 48801542 G A CCDC114 Silent p.L395L 0.18 TCGA-QQ-A8VG-01 19 51170823 51170823 T A SHANK1 Missense_Mutation p.E1465V 0.42 unknown(0) TCGA-QQ-A8VG-01 19 51645996 51645996 C T SIGLEC7 Missense_Mutation p.R124C 0.16 deleterious(0) possibly_damaging(0.743) TCGA-QQ-A8VG-01 19 52327005 52327005 G A FPR3 Missense_Mutation p.E2K 0.22 deleterious(0.01) possibly_damaging(0.558) TCGA-QQ-A8VG-01 19 5244376 5244376 G A PTPRS Missense_Mutation p.S369F 0.20 deleterious(0.02) probably_damaging(0.949) TCGA-QQ-A8VG-01 19 53512688 53512688 G A ERVV-1 5'Flank 0.10 TCGA-QQ-A8VG-01 19 53571974 53571974 G A ZNF160 Missense_Mutation p.R605C 0.16 tolerated(0.18) possibly_damaging(0.59) TCGA-QQ-A8VG-01 19 53762706 53762706 C T VN1R2 Missense_Mutation p.P360S 0.19 deleterious(0.03) probably_damaging(0.96) TCGA-QQ-A8VG-01 19 54080238 54080238 C T ZNF331 Missense_Mutation p.R142C 0.22 tolerated(0.14) benign(0.002) TCGA-QQ-A8VG-01 19 54251935 54251935 A T MIR521-1 RNA 0.20 TCGA-QQ-A8VG-01 19 54802114 54802114 G A LILRA3 Silent p.T358T 0.17 TCGA-QQ-A8VG-01 19 55147660 55147660 G A AC009892.10 Intron 0.38 TCGA-QQ-A8VG-01 19 55501975 55501975 G A NLRP2 Silent p.G881G 0.13 TCGA-QQ-A8VG-01 19 55994117 55994117 C T ZNF628 Silent p.F519F 0.10 TCGA-QQ-A8VG-01 19 56103268 56103268 G A FIZ1 3'UTR 0.20 TCGA-QQ-A8VG-01 19 5784763 5784763 G A PRR22 5'UTR 0.30 TCGA-QQ-A8VG-01 19 58596421 58596421 G A ZSCAN18 Silent p.S444S 0.26 TCGA-QQ-A8VG-01 19 58904510 58904510 C T RPS5 Silent p.I92I 0.16 TCGA-QQ-A8VG-01 19 6416548 6416548 G A KHSRP Missense_Mutation p.P481S 0.25 deleterious(0.03) probably_damaging(0.931) TCGA-QQ-A8VG-01 19 7585743 7585743 C T ZNF358 Missense_Mutation p.P539S 0.19 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-QQ-A8VG-01 19 8538588 8538588 G A HNRNPM Missense_Mutation p.M346I 0.18 tolerated(0.21) benign(0.026) TCGA-QQ-A8VG-01 19 8563136 8563136 G A PRAM1 Silent p.F490F 0.17 TCGA-QQ-A8VG-01 19 9056817 9056817 G A MUC16 Missense_Mutation p.S10210L 0.14 possibly_damaging(0.504) TCGA-QQ-A8VG-01 19 9076249 9076249 G A MUC16 Silent p.L3733L 0.09 TCGA-QQ-A8VG-01 19 9581134 9581134 C T ZNF560 Missense_Mutation p.D128N 0.21 tolerated(0.18) probably_damaging(0.945) TCGA-QQ-A8VG-01 19 972055 972055 C T ARID3A Missense_Mutation p.S591L 0.19 deleterious_low_confidence(0) unknown(0) TCGA-QQ-A8VG-01 19 9949265 9949267 CGT AG PIN1 Nonsense_Mutation p.S71* 0.16 TCGA-QQ-A8VG-01 1 100598707 100598707 G A TRMT13 5'Flank 0.27 TCGA-QQ-A8VG-01 1 101704967 101704967 T C S1PR1 Missense_Mutation p.Y143H 0.20 tolerated(1) benign(0.002) TCGA-QQ-A8VG-01 1 103355091 103355091 C T COL11A1 Missense_Mutation p.G1462S 0.20 unknown(0) TCGA-QQ-A8VG-01 1 109261651 109261651 C T FNDC7 Missense_Mutation p.S193F 0.13 tolerated(0.73) benign(0.008) TCGA-QQ-A8VG-01 1 109391374 109391374 C T AKNAD1 Silent p.L415L 0.11 TCGA-QQ-A8VG-01 1 113662088 113662088 C T LRIG2 Missense_Mutation p.P972S 0.19 tolerated(0.39) benign(0.038) TCGA-QQ-A8VG-01 1 116675774 116675774 G A MAB21L3 Missense_Mutation p.E293K 0.11 deleterious(0.01) possibly_damaging(0.671) TCGA-QQ-A8VG-01 1 1201486 1201486 G A UBE2J2 Intron 0.07 TCGA-QQ-A8VG-01 1 12183373 12183373 C T TNFRSF8 Missense_Mutation p.P327S 0.11 tolerated(0.2) probably_damaging(0.962) TCGA-QQ-A8VG-01 1 12835790 12835790 G A PRAMEF12 Missense_Mutation p.R131Q 0.19 tolerated(0.58) benign(0) TCGA-QQ-A8VG-01 1 150444277 150444277 C T RPRD2 Silent p.T951T 0.21 TCGA-QQ-A8VG-01 1 151139464 151139464 G C SCNM1 Silent p.L59L 0.26 TCGA-QQ-A8VG-01 1 151263000 151263000 C T ZNF687 Missense_Mutation p.S1057F 0.24 tolerated(0.08) possibly_damaging(0.573) TCGA-QQ-A8VG-01 1 152383410 152383410 C T CRNN Missense_Mutation p.D50N 0.20 deleterious(0) probably_damaging(0.948) TCGA-QQ-A8VG-01 1 154917421 154917421 G A PBXIP1 3'UTR 0.15 TCGA-QQ-A8VG-01 1 155450339 155450339 G A ASH1L Silent p.F774F 0.16 TCGA-QQ-A8VG-01 1 155723175 155723175 C T GON4L Missense_Mutation p.E1888K 0.24 deleterious(0) possibly_damaging(0.486) TCGA-QQ-A8VG-01 1 157739906 157739906 G A FCRL2 Silent p.S115S 0.11 TCGA-QQ-A8VG-01 1 157771909 157771909 G A FCRL1 Missense_Mutation p.H228Y 0.29 deleterious(0.04) possibly_damaging(0.649) TCGA-QQ-A8VG-01 1 158435387 158435387 C T OR10K1 Silent p.F12F 0.11 TCGA-QQ-A8VG-01 1 158612247 158612247 G A SPTA1 Missense_Mutation p.S1564F 0.17 deleterious(0.01) probably_damaging(0.912) TCGA-QQ-A8VG-01 1 159899162 159899162 G A IGSF9 Missense_Mutation p.P783L 0.24 deleterious(0.04) benign(0.006) TCGA-QQ-A8VG-01 1 160326887 160326887 C T NCSTN Silent p.L617L 0.16 TCGA-QQ-A8VG-01 1 162381845 162381845 G A SH2D1B 5'UTR 0.26 TCGA-QQ-A8VG-01 1 16260291 16260291 C T SPEN Missense_Mutation p.P2519L 0.14 benign(0.022) TCGA-QQ-A8VG-01 1 16456750 16456750 G A EPHA2 Silent p.S880S 0.11 TCGA-QQ-A8VG-01 1 16456751 16456751 G A EPHA2 Missense_Mutation p.S880F 0.11 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 1 165175183 165175183 G A LMX1A Silent p.I302I 0.22 TCGA-QQ-A8VG-01 1 171118800 171118800 C T FMO6P Silent p.L243L 0.14 TCGA-QQ-A8VG-01 1 17422425 17422425 C T PADI2 Silent p.V130V 0.20 TCGA-QQ-A8VG-01 1 175129692 175129692 C T KIAA0040 3'UTR 0.29 TCGA-QQ-A8VG-01 1 176913033 176913033 G A ASTN1 Silent p.L791L 0.20 TCGA-QQ-A8VG-01 1 181059430 181059430 G A IER5 3'UTR 0.14 TCGA-QQ-A8VG-01 1 182555704 182555704 G A RNASEL Missense_Mutation p.R80C 0.14 tolerated(0.07) benign(0.032) TCGA-QQ-A8VG-01 1 183086567 183086567 C T LAMC1 Silent p.F559F 0.15 TCGA-QQ-A8VG-01 1 190423993 190423993 C T BRINP3 Missense_Mutation p.E10K 0.15 tolerated_low_confidence(0.55) benign(0.003) TCGA-QQ-A8VG-01 1 196438156 196438156 C T KCNT2 Missense_Mutation p.E143K 0.15 deleterious(0) probably_damaging(0.965) TCGA-QQ-A8VG-01 1 19984423 19984423 C T MINOS1-NBL1 3'UTR 0.25 TCGA-QQ-A8VG-01 1 201020239 201020239 A T CACNA1S Missense_Mutation p.L1329Q 0.20 deleterious(0) benign(0.004) TCGA-QQ-A8VG-01 1 202283984 202283984 C T LGR6 Missense_Mutation p.P541L 0.23 tolerated(0.71) benign(0.009) TCGA-QQ-A8VG-01 1 203054910 203054910 G A MYOG Silent p.H60H 0.17 TCGA-QQ-A8VG-01 1 204115825 204115825 G A ETNK2 Missense_Mutation p.L196F 0.17 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VG-01 1 204192699 204192699 G A PLEKHA6 Missense_Mutation p.P1016S 0.14 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-QQ-A8VG-01 1 205897105 205897105 G A SLC26A9 Silent p.I342I 0.17 TCGA-QQ-A8VG-01 1 206941923 206941923 C T IL10 3'UTR 0.20 TCGA-QQ-A8VG-01 1 209961786 209961786 G A IRF6 Silent p.P461P 0.29 TCGA-QQ-A8VG-01 1 209961873 209961873 G A IRF6 Silent p.I432I 0.18 TCGA-QQ-A8VG-01 1 21050151 21050151 C T SH2D5 Silent p.T292T 0.17 TCGA-QQ-A8VG-01 1 210856931 210856931 C T KCNH1 Missense_Mutation p.D888N 0.14 tolerated_low_confidence(0.05) benign(0.077) TCGA-QQ-A8VG-01 1 217955540 217955540 G A SPATA17 Missense_Mutation p.V250I 0.25 deleterious(0.01) probably_damaging(0.996) TCGA-QQ-A8VG-01 1 228487765 228487765 C T OBSCN Missense_Mutation p.R4553C 0.12 probably_damaging(0.993) TCGA-QQ-A8VG-01 1 228525033 228525033 C T OBSCN Silent p.S6540S 0.11 TCGA-QQ-A8VG-01 1 228547866 228547866 G A OBSCN Intron 0.23 TCGA-QQ-A8VG-01 1 229422292 229422292 C T RAB4A Missense_Mutation p.H31Y 0.11 tolerated(0.5) benign(0.142) TCGA-QQ-A8VG-01 1 231355688 231355688 C T TRIM67 3'Flank 0.16 TCGA-QQ-A8VG-01 1 233807242 233807242 C T KCNK1 Missense_Mutation p.S326L 0.09 tolerated(0.44) benign(0) TCGA-QQ-A8VG-01 1 236201485 236201485 C T NID1 Missense_Mutation p.E402K 0.10 tolerated(0.18) benign(0.037) TCGA-QQ-A8VG-01 1 237996526 237996526 C T RYR2 3'UTR 0.17 TCGA-QQ-A8VG-01 1 241099923 241099923 C T RGS7 Missense_Mutation p.D104N 0.22 deleterious(0) probably_damaging(0.991) TCGA-QQ-A8VG-01 1 247902365 247902365 G A OR14K1 Missense_Mutation p.R150K 0.14 deleterious(0) benign(0.002) TCGA-QQ-A8VG-01 1 248263537 248263537 T - OR2L13 Frame_Shift_Del p.I288Sfs*4 0.13 TCGA-QQ-A8VG-01 1 29611337 29611337 C T PTPRU Silent p.V758V 0.14 TCGA-QQ-A8VG-01 1 32124108 32124108 G A COL16A1 Missense_Mutation p.P1334L 0.20 unknown(0) TCGA-QQ-A8VG-01 1 34058088 34058088 C T CSMD2 Intron 0.17 TCGA-QQ-A8VG-01 1 34209095 34209095 C T CSMD2 Silent p.E613E 0.20 TCGA-QQ-A8VG-01 1 35370254 35370254 C T DLGAP3 Missense_Mutation p.S244N 0.21 deleterious(0.03) probably_damaging(0.932) TCGA-QQ-A8VG-01 1 41012536 41012536 C T ZNF684 Missense_Mutation p.H181Y 0.12 deleterious(0.03) probably_damaging(0.938) TCGA-QQ-A8VG-01 1 60463384 60463384 G A C1orf87 Silent p.F459F 0.20 TCGA-QQ-A8VG-01 1 6635086 6635086 C T TAS1R1 Silent p.V298V 0.15 TCGA-QQ-A8VG-01 1 79392644 79392644 G A ELTD1 Missense_Mutation p.S337L 0.22 deleterious(0.02) possibly_damaging(0.685) TCGA-QQ-A8VG-01 1 82372860 82372860 C T LPHN2 Nonsense_Mutation p.Q78* 0.12 TCGA-QQ-A8VG-01 1 86959980 86959980 G A CLCA1 Silent p.T597T 0.16 TCGA-QQ-A8VG-01 1 89582835 89582835 G A GBP2 Silent p.F236F 0.11 TCGA-QQ-A8VG-01 1 93306153 93306153 C T RPL5 Missense_Mutation p.P251S 0.18 deleterious(0.01) benign(0.221) TCGA-QQ-A8VG-01 1 97279821 97279821 C T PTBP2 3'UTR 0.16 TCGA-QQ-A8VG-01 20 1223278 1223278 G A RAD21L1 Missense_Mutation p.R291K 0.27 tolerated(1) benign(0.011) TCGA-QQ-A8VG-01 20 1460499 1460499 G A SIRPB2 Silent p.I99I 0.12 TCGA-QQ-A8VG-01 20 18794541 18794541 G A SCP2D1 Missense_Mutation p.V28I 0.12 tolerated(0.3) benign(0.032) TCGA-QQ-A8VG-01 20 23728456 23728456 G A CST1 Silent p.S141S 0.14 TCGA-QQ-A8VG-01 20 29993970 29993970 C T DEFB121 5'UTR 0.22 TCGA-QQ-A8VG-01 20 33572897 33572897 C T MYH7B Missense_Mutation p.P299L 0.12 benign(0.311) TCGA-QQ-A8VG-01 20 33632313 33632313 T G TRPC4AP Missense_Mutation p.N287T 0.15 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VG-01 20 35737006 35737006 C T MROH8 Silent p.E1019E 0.24 TCGA-QQ-A8VG-01 20 35826834 35826834 C T RPN2 Missense_Mutation p.P81L 0.27 tolerated(0.28) probably_damaging(0.942) TCGA-QQ-A8VG-01 20 44582452 44582452 G A ZNF335 Nonsense_Mutation p.Q860* 0.17 TCGA-QQ-A8VG-01 20 57875848 57875848 C T EDN3 5'UTR 0.13 TCGA-QQ-A8VG-01 20 62859350 62859350 C T MYT1 Intron 0.12 TCGA-QQ-A8VG-01 20 9370585 9370585 C T PLCB4 Silent p.L406L 0.12 TCGA-QQ-A8VG-01 21 19629360 19629360 C T CHODL Missense_Mutation p.P155S 0.15 tolerated(0.07) possibly_damaging(0.674) TCGA-QQ-A8VG-01 21 30959769 30959769 G A GRIK1 Silent p.F570F 0.08 TCGA-QQ-A8VG-01 21 45877037 45877037 C T LRRC3 Silent p.I170I 0.31 TCGA-QQ-A8VG-01 21 46067223 46067223 C T KRTAP10-11 Missense_Mutation p.S283F 0.21 deleterious(0.01) possibly_damaging(0.788) TCGA-QQ-A8VG-01 22 22707577 22707577 C T IGLV5-48 Silent p.F55F 0.18 TCGA-QQ-A8VG-01 22 30887889 30887889 C T SEC14L4 Silent p.T281T 0.28 TCGA-QQ-A8VG-01 22 32548573 32548573 C T C22orf42 Silent p.V116V 0.17 TCGA-QQ-A8VG-01 22 37196843 37196843 G A PVALB 3'UTR 0.14 TCGA-QQ-A8VG-01 22 37273721 37273721 G A NCF4 3'UTR 0.13 TCGA-QQ-A8VG-01 22 37532306 37532306 G A IL2RB Missense_Mutation p.P222L 0.22 tolerated(0.1) benign(0.101) TCGA-QQ-A8VG-01 22 38121467 38121467 C T TRIOBP Silent p.T968T 0.11 TCGA-QQ-A8VG-01 22 39626130 39626130 C T PDGFB Missense_Mutation p.R187Q 0.21 tolerated(0.31) benign(0.075) TCGA-QQ-A8VG-01 22 43089210 43089210 C T A4GALT Missense_Mutation p.G250S 0.21 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 22 43831086 43831086 C T MPPED1 Silent p.F119F 0.23 TCGA-QQ-A8VG-01 22 44079699 44079699 G A EFCAB6 Silent p.I393I 0.20 TCGA-QQ-A8VG-01 2 107460171 107460171 G A ST6GAL2 Missense_Mutation p.S88F 0.16 benign(0.332) TCGA-QQ-A8VG-01 2 120097419 120097419 G A C2orf76 Silent p.I39I 0.17 TCGA-QQ-A8VG-01 2 128341770 128341770 G A MYO7B Missense_Mutation p.E473K 0.18 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 2 135975070 135975070 G A ZRANB3 Silent p.I820I 0.13 TCGA-QQ-A8VG-01 2 141359181 141359181 T C LRP1B Missense_Mutation p.Y2276C 0.24 possibly_damaging(0.759) TCGA-QQ-A8VG-01 2 165802202 165802202 G A SLC38A11 Missense_Mutation p.L33F 0.17 deleterious(0.01) probably_damaging(0.991) TCGA-QQ-A8VG-01 2 165947040 165947040 C T SCN3A Missense_Mutation p.E1875K 0.16 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VG-01 2 166179976 166179976 C T SCN2A Missense_Mutation p.S661F 0.25 tolerated(0.06) possibly_damaging(0.674) TCGA-QQ-A8VG-01 2 178483522 178483522 G A TTC30A 5'UTR 0.22 TCGA-QQ-A8VG-01 2 179427137 179427137 C T TTN Missense_Mutation p.E27908K 0.25 TCGA-QQ-A8VG-01 2 179593002 179593002 C T TTN Missense_Mutation p.D6517N 0.20 TCGA-QQ-A8VG-01 2 179594530 179594530 C T TTN Silent p.Q6150Q 0.12 TCGA-QQ-A8VG-01 2 179632494 179632494 C T TTN Missense_Mutation p.E3155K 0.14 TCGA-QQ-A8VG-01 2 185800578 185800578 C T ZNF804A Missense_Mutation p.S152F 0.23 tolerated(0.57) probably_damaging(0.986) TCGA-QQ-A8VG-01 2 185803113 185803113 G A ZNF804A Missense_Mutation p.G997E 0.12 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VG-01 2 188247945 188247945 C T CALCRL Missense_Mutation p.E47K 0.18 tolerated(0.62) benign(0.156) TCGA-QQ-A8VG-01 2 189906326 189906326 C T COL5A2 Missense_Mutation p.E1207K 0.25 unknown(0) TCGA-QQ-A8VG-01 2 190640233 190640233 G A ORMDL1 Intron 0.15 TCGA-QQ-A8VG-01 2 196729166 196729166 C T DNAH7 Missense_Mutation p.E2405K 0.20 tolerated(0.18) benign(0.007) TCGA-QQ-A8VG-01 2 197750179 197750179 G A PGAP1 Missense_Mutation p.S414L 0.14 deleterious(0) probably_damaging(0.959) TCGA-QQ-A8VG-01 2 198649959 198649959 G A BOLL Intron 0.13 TCGA-QQ-A8VG-01 2 212243324 212243324 G A ERBB4 3'UTR 0.17 TCGA-QQ-A8VG-01 2 212483964 212483964 G A ERBB4 Missense_Mutation p.P747S 0.15 deleterious(0.05) possibly_damaging(0.783) TCGA-QQ-A8VG-01 2 218925105 218925105 G A CXCR2P1 RNA 0.16 TCGA-QQ-A8VG-01 2 219903267 219903267 G A CCDC108 Missense_Mutation p.P63S 0.11 tolerated_low_confidence(1) benign(0.039) TCGA-QQ-A8VG-01 2 222290846 222290846 C T EPHA4 Missense_Mutation p.G955S 0.10 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VG-01 2 231103060 231103060 C T SP140 Missense_Mutation p.P124S 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-QQ-A8VG-01 2 238280646 238280646 C T COL6A3 Silent p.Q1338Q 0.21 TCGA-QQ-A8VG-01 2 238668788 238668788 C T LRRFIP1 Missense_Mutation p.P277S 0.14 tolerated(0.5) benign(0.277) TCGA-QQ-A8VG-01 2 241622024 241622024 G A AQP12B Silent p.F77F 0.16 TCGA-QQ-A8VG-01 2 242078117 242078117 G A PASK Silent p.V231V 0.19 TCGA-QQ-A8VG-01 2 242371175 242371175 C T FARP2 Missense_Mutation p.H285Y 0.19 deleterious(0.01) possibly_damaging(0.773) TCGA-QQ-A8VG-01 2 242694591 242694591 C T D2HGDH Intron 0.24 TCGA-QQ-A8VG-01 2 26687736 26687736 C T OTOF Splice_Site p.X1654_splice 0.18 TCGA-QQ-A8VG-01 2 30976012 30976012 C T CAPN13 Missense_Mutation p.E332K 0.17 tolerated(0.13) benign(0.017) TCGA-QQ-A8VG-01 2 45416340 45416340 C T LINC01121 RNA 0.12 TCGA-QQ-A8VG-01 2 48844955 48844955 C T GTF2A1L 5'Flank 0.18 TCGA-QQ-A8VG-01 2 54839468 54839468 C T SPTBN1 Silent p.F157F 0.10 TCGA-QQ-A8VG-01 2 56404842 56404842 C T RP11-481J13.1 Intron 0.28 TCGA-QQ-A8VG-01 2 5835236 5835236 C T SOX11 3'UTR 0.09 TCGA-QQ-A8VG-01 2 5837583 5837583 C T SOX11 3'UTR 0.17 TCGA-QQ-A8VG-01 2 69746219 69746219 G A AAK1 Missense_Mutation p.A455V 0.17 tolerated(0.09) unknown(0) TCGA-QQ-A8VG-01 2 70187775 70187775 G A ASPRV1 3'UTR 0.11 TCGA-QQ-A8VG-01 2 74146599 74146599 G A ACTG2 Missense_Mutation p.G343E 0.11 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-QQ-A8VG-01 2 77744805 77744805 G A LRRTM4 Intron 0.25 TCGA-QQ-A8VG-01 2 77744806 77744806 T A LRRTM4 Intron 0.26 TCGA-QQ-A8VG-01 2 79254218 79254218 G A REG3G Missense_Mutation p.G85E 0.26 deleterious(0.02) possibly_damaging(0.493) TCGA-QQ-A8VG-01 2 79385793 79385793 G A REG3A Missense_Mutation p.S60F 0.11 deleterious(0) probably_damaging(0.991) TCGA-QQ-A8VG-01 2 84784863 84784863 G A DNAH6 Missense_Mutation p.G536D 0.15 tolerated(0.35) benign(0.096) TCGA-QQ-A8VG-01 2 85662200 85662200 C T SH2D6 Missense_Mutation p.S41L 0.19 tolerated(0.33) benign(0.001) TCGA-QQ-A8VG-01 2 86014817 86014817 C T ATOH8 3'UTR 0.15 TCGA-QQ-A8VG-01 2 88409874 88409874 C T SMYD1 Missense_Mutation p.A439V 0.09 tolerated(0.24) benign(0.002) TCGA-QQ-A8VG-01 2 88411609 88411609 C T SMYD1 3'UTR 0.15 TCGA-QQ-A8VG-01 2 96799753 96799753 C T ASTL Missense_Mutation p.M96I 0.36 deleterious(0) benign(0.001) TCGA-QQ-A8VG-01 3 100565249 100565249 G A ABI3BP Missense_Mutation p.P522S 0.08 tolerated(1) benign(0.005) TCGA-QQ-A8VG-01 3 101232051 101232051 G A SENP7 5'Flank 0.19 TCGA-QQ-A8VG-01 3 10417133 10417133 G A ATP2B2 Missense_Mutation p.S466L 0.21 deleterious(0.02) probably_damaging(0.997) TCGA-QQ-A8VG-01 3 108836856 108836856 G A MORC1 Silent p.F17F 0.16 TCGA-QQ-A8VG-01 3 110612126 110612126 C T RP11-553A10.1 Silent p.R28R 0.25 TCGA-QQ-A8VG-01 3 11080357 11080357 C T SLC6A1 3'UTR 0.12 TCGA-QQ-A8VG-01 3 11080358 11080358 C T SLC6A1 3'UTR 0.13 TCGA-QQ-A8VG-01 3 111632168 111632168 G A PHLDB2 Silent p.E446E 0.09 TCGA-QQ-A8VG-01 3 112647930 112647930 G A CD200R1 Intron 0.27 TCGA-QQ-A8VG-01 3 113675255 113675255 C T ZDHHC23 Silent p.T314T 0.21 TCGA-QQ-A8VG-01 3 113679744 113679744 C T ZDHHC23 3'UTR 0.21 TCGA-QQ-A8VG-01 3 124207076 124207076 G A KALRN Missense_Mutation p.G1435E 0.19 tolerated(0.06) benign(0.082) TCGA-QQ-A8VG-01 3 12571292 12571292 C T TSEN2 Missense_Mutation p.H390Y 0.12 deleterious(0.03) possibly_damaging(0.625) TCGA-QQ-A8VG-01 3 130107651 130107651 G A COL6A5 Missense_Mutation p.R697K 0.25 tolerated(0.06) benign(0.066) TCGA-QQ-A8VG-01 3 138762997 138762997 C T PRR23C Missense_Mutation p.E156K 0.17 tolerated(0.14) possibly_damaging(0.535) TCGA-QQ-A8VG-01 3 138763066 138763066 C T PRR23C Missense_Mutation p.E133K 0.19 deleterious(0.03) probably_damaging(0.996) TCGA-QQ-A8VG-01 3 141499263 141499263 G A GRK7 Silent p.K220K 0.23 TCGA-QQ-A8VG-01 3 1418690 1418690 C T CNTN6 Silent p.V699V 0.20 TCGA-QQ-A8VG-01 3 142183951 142183951 G A ATR Silent p.S2343S 0.18 TCGA-QQ-A8VG-01 3 15515533 15515533 C T COLQ Missense_Mutation p.G204R 0.21 deleterious(0) unknown(0) TCGA-QQ-A8VG-01 3 155649568 155649568 C T GMPS Silent p.S525S 0.10 TCGA-QQ-A8VG-01 3 159713547 159713547 A G IL12A 3'UTR 0.17 TCGA-QQ-A8VG-01 3 167000166 167000166 G A ZBBX Missense_Mutation p.S705L 0.16 tolerated(1) benign(0) TCGA-QQ-A8VG-01 3 167344937 167344937 C T WDR49 Intron 0.19 TCGA-QQ-A8VG-01 3 183909015 183909015 C T ABCF3 Missense_Mutation p.S514F 0.17 deleterious(0.01) benign(0.031) TCGA-QQ-A8VG-01 3 188595861 188595861 C T LPP 3'UTR 0.15 TCGA-QQ-A8VG-01 3 189690672 189690672 C T LEPREL1 Missense_Mutation p.A564T 0.16 deleterious(0.02) possibly_damaging(0.829) TCGA-QQ-A8VG-01 3 195538820 195538820 G A MUC4 5'UTR 0.19 TCGA-QQ-A8VG-01 3 37028791 37028791 G A EPM2AIP1 3'UTR 0.19 TCGA-QQ-A8VG-01 3 38783839 38783839 G A SCN10A Silent p.A683A 0.15 TCGA-QQ-A8VG-01 3 38783840 38783840 G A SCN10A Missense_Mutation p.A683V 0.16 deleterious(0) possibly_damaging(0.896) TCGA-QQ-A8VG-01 3 38938429 38938429 G A SCN11A Silent p.I770I 0.18 TCGA-QQ-A8VG-01 3 45153654 45153654 C T CDCP1 Silent p.V192V 0.08 TCGA-QQ-A8VG-01 3 46014638 46014638 G A FYCO1 Nonsense_Mutation p.Q161* 0.15 TCGA-QQ-A8VG-01 3 46751105 46751105 G A TMIE Missense_Mutation p.S133N 0.27 tolerated(0.13) benign(0.139) TCGA-QQ-A8VG-01 3 51897111 51897111 C T IQCF2 Nonsense_Mutation p.Q74* 0.11 TCGA-QQ-A8VG-01 3 52473941 52473941 G A SEMA3G Silent p.I439I 0.16 TCGA-QQ-A8VG-01 3 52820317 52820317 C T ITIH1 Nonsense_Mutation p.Q534* 0.21 TCGA-QQ-A8VG-01 3 53778779 53778779 C T CACNA1D Silent p.I997I 0.20 TCGA-QQ-A8VG-01 3 57108611 57108611 G A SPATA12 3'UTR 0.16 TCGA-QQ-A8VG-01 3 57443834 57443834 G A DNAH12 Silent p.F992F 0.18 TCGA-QQ-A8VG-01 3 58413849 58413849 G A PDHB Missense_Mutation p.P331L 0.20 deleterious(0.04) possibly_damaging(0.897) TCGA-QQ-A8VG-01 3 98072975 98072975 C T OR5K4 Missense_Mutation p.S93F 0.19 deleterious(0.02) benign(0.299) TCGA-QQ-A8VG-01 3 9847999 9847999 G A ARPC4 3'UTR 0.34 TCGA-QQ-A8VG-01 4 100515993 100515993 C T MTTP Missense_Mutation p.P288S 0.15 tolerated(0.75) benign(0.016) TCGA-QQ-A8VG-01 4 106159993 106159993 C T TET2 Intron 0.21 TCGA-QQ-A8VG-01 4 106588413 106588413 G A ARHGEF38 Missense_Mutation p.G606E 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 4 119461423 119461423 C T CEP170P1 RNA 0.18 TCGA-QQ-A8VG-01 4 122085294 122085294 C T TNIP3 Missense_Mutation p.G73E 0.17 tolerated(0.52) benign(0.026) TCGA-QQ-A8VG-01 4 126373193 126373193 C T FAT4 Silent p.S3674S 0.19 TCGA-QQ-A8VG-01 4 154624787 154624787 C T TLR2 Missense_Mutation p.S243F 0.15 tolerated(0.71) possibly_damaging(0.689) TCGA-QQ-A8VG-01 4 155156102 155156102 C T DCHS2 Nonsense_Mutation p.W2779* 0.14 TCGA-QQ-A8VG-01 4 15937509 15937509 G A FGFBP1 3'UTR 0.24 TCGA-QQ-A8VG-01 4 174448153 174448153 G A HAND2 3'UTR 0.13 TCGA-QQ-A8VG-01 4 1806225 1806225 C T FGFR3 Missense_Mutation p.S417F 0.14 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 4 187541765 187541765 G A FAT1 Missense_Mutation p.S1992F 0.20 benign(0.098) TCGA-QQ-A8VG-01 4 22750547 22750547 G A GBA3 Missense_Mutation p.E391K 0.13 tolerated(0.4) benign(0.004) TCGA-QQ-A8VG-01 4 25806367 25806367 C T SEL1L3 Silent p.R524R 0.11 TCGA-QQ-A8VG-01 4 37446810 37446810 C T KIAA1239 Missense_Mutation p.S1067F 0.12 tolerated(0.69) possibly_damaging(0.818) TCGA-QQ-A8VG-01 4 38774772 38774772 G A TLR10 3'UTR 0.16 TCGA-QQ-A8VG-01 4 42403081 42403081 C T SHISA3 Silent p.I110I 0.15 TCGA-QQ-A8VG-01 4 48230594 48230594 T C TEC Missense_Mutation p.K13R 0.20 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VG-01 4 55589796 55589796 C T KIT Silent p.L426L 0.14 TCGA-QQ-A8VG-01 4 68484519 68484519 C A UBA6 3'UTR 0.16 TCGA-QQ-A8VG-01 4 6864253 6864253 C T KIAA0232 Missense_Mutation p.S715F 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 4 87744874 87744874 G A SLC10A6 Silent p.L367L 0.19 TCGA-QQ-A8VG-01 4 94436461 94436461 C T GRID2 Missense_Mutation p.P698S 0.16 deleterious(0.01) probably_damaging(0.963) TCGA-QQ-A8VG-01 5 1081838 1081841 GCGT CAG SLC12A7 Frame_Shift_Del p.Y383Sfs*49 0.24 TCGA-QQ-A8VG-01 5 110003051 110003051 C T TMEM232 Translation_Start_Site p.M1? 0.17 tolerated_low_confidence(0.13) benign(0) TCGA-QQ-A8VG-01 5 11023048 11023048 C T CTNND2 Silent p.G944G 0.11 TCGA-QQ-A8VG-01 5 110448791 110448791 C T WDR36 Missense_Mutation p.R635C 0.19 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 5 126732295 126732295 C T MEGF10 Missense_Mutation p.P162S 0.24 deleterious(0.03) probably_damaging(1) TCGA-QQ-A8VG-01 5 140165938 140165938 C T PCDHA1 Silent p.L21L 0.17 TCGA-QQ-A8VG-01 5 140188055 140188055 G A PCDHA4 Missense_Mutation p.R428Q 0.17 tolerated_low_confidence(0.13) benign(0.089) TCGA-QQ-A8VG-01 5 140208787 140208787 C A PCDHA6 Missense_Mutation p.L371I 0.14 deleterious_low_confidence(0) probably_damaging(0.924) TCGA-QQ-A8VG-01 5 140221013 140221013 C T PCDHA8 Missense_Mutation p.P36L 0.18 tolerated_low_confidence(0.15) benign(0.065) TCGA-QQ-A8VG-01 5 140348244 140348244 C T PCDHAC2 Silent p.D631D 0.30 TCGA-QQ-A8VG-01 5 140474915 140474915 C T PCDHB2 Missense_Mutation p.H181Y 0.13 tolerated_low_confidence(0.07) benign(0.052) TCGA-QQ-A8VG-01 5 140595022 140595022 G A PCDHB13 Missense_Mutation p.D443N 0.17 deleterious_low_confidence(0) possibly_damaging(0.482) TCGA-QQ-A8VG-01 5 150639438 150639438 C T GM2A Silent p.V68V 0.20 TCGA-QQ-A8VG-01 5 154183802 154183802 C T LARP1 Silent p.P750P 0.22 TCGA-QQ-A8VG-01 5 154305483 154305483 G A GEMIN5 Missense_Mutation p.S411F 0.17 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VG-01 5 156589653 156589653 G A FAM71B Silent p.L541L 0.17 TCGA-QQ-A8VG-01 5 156668658 156668658 C T ITK Silent p.L330L 0.08 TCGA-QQ-A8VG-01 5 161118974 161118974 C T GABRA6 Missense_Mutation p.T285I 0.17 deleterious(0) probably_damaging(0.91) TCGA-QQ-A8VG-01 5 169506118 169506118 G C DOCK2 Missense_Mutation p.E1712Q 0.11 tolerated_low_confidence(0.05) probably_damaging(0.959) TCGA-QQ-A8VG-01 5 169508871 169508871 C T DOCK2 Silent p.I1771I 0.18 TCGA-QQ-A8VG-01 5 169508872 169508872 C T DOCK2 Missense_Mutation p.P1772S 0.16 tolerated_low_confidence(0.3) benign(0) TCGA-QQ-A8VG-01 5 169533045 169533045 G A FOXI1 Missense_Mutation p.M28I 0.09 deleterious(0.02) benign(0.03) TCGA-QQ-A8VG-01 5 172396679 172396679 A T RPL26L1 3'UTR 0.38 TCGA-QQ-A8VG-01 5 172537591 172537591 T C CREBRF Missense_Mutation p.L495P 0.25 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 5 176025456 176025456 G A GPRIN1 Silent p.S460S 0.13 TCGA-QQ-A8VG-01 5 176301366 176301366 C T UNC5A Nonsense_Mutation p.Q393* 0.16 TCGA-QQ-A8VG-01 5 176517791 176517791 G A FGFR4 Missense_Mutation p.R134K 0.21 tolerated(0.55) benign(0.001) TCGA-QQ-A8VG-01 5 176815283 176815283 C T SLC34A1 Silent p.D282D 0.17 TCGA-QQ-A8VG-01 5 22142502 22142502 G A CDH12 Intron 0.15 TCGA-QQ-A8VG-01 5 26885786 26885786 G A CDH9 Missense_Mutation p.L607F 0.18 tolerated(0.17) benign(0.007) TCGA-QQ-A8VG-01 5 32126496 32126496 A T GOLPH3 Missense_Mutation p.I240N 0.13 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 5 39315915 39315915 C T C9 Missense_Mutation p.E278K 0.13 tolerated(0.24) benign(0.05) TCGA-QQ-A8VG-01 5 40947843 40947843 G A C7 Missense_Mutation p.R293Q 0.21 deleterious(0) probably_damaging(0.959) TCGA-QQ-A8VG-01 5 41176764 41176764 C T C6 Silent p.T327T 0.23 TCGA-QQ-A8VG-01 5 54327291 54327291 G A GZMK Missense_Mutation p.G155R 0.24 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 5 64867822 64867823 - A PPWD1 Frame_Shift_Ins p.T227Nfs*16 0.14 TCGA-QQ-A8VG-01 5 72171473 72171473 C T TNPO1 Missense_Mutation p.P237L 0.27 tolerated(0.06) benign(0.01) TCGA-QQ-A8VG-01 5 72207487 72207487 C T TNPO1 3'UTR 0.16 TCGA-QQ-A8VG-01 5 78373369 78373369 G A BHMT2 Missense_Mutation p.E34K 0.19 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 5 90052412 90052412 G A GPR98 Missense_Mutation p.D3908N 0.20 probably_damaging(0.959) TCGA-QQ-A8VG-01 5 96443162 96443162 C T LIX1 Missense_Mutation p.V97M 0.16 deleterious(0.04) probably_damaging(0.996) TCGA-QQ-A8VG-01 5 96503380 96503380 G A RIOK2 Silent p.F396F 0.15 TCGA-QQ-A8VG-01 6 102124672 102124672 T G GRIK2 Nonsense_Mutation p.L239* 0.16 TCGA-QQ-A8VG-01 6 10877449 10877449 C T GCM2 Silent p.Q89Q 0.12 TCGA-QQ-A8VG-01 6 109907239 109907239 G A AK9 Missense_Mutation p.P627S 0.13 tolerated(0.11) benign(0.094) TCGA-QQ-A8VG-01 6 116758475 116758475 G A DSE Nonsense_Mutation p.W948* 0.16 TCGA-QQ-A8VG-01 6 117237188 117237188 G A RFX6 Missense_Mutation p.M266I 0.18 tolerated(0.12) benign(0.119) TCGA-QQ-A8VG-01 6 129674347 129674347 G A LAMA2 Missense_Mutation p.G1521E 0.10 deleterious(0) probably_damaging(1) TCGA-QQ-A8VG-01 6 147047248 147047248 C T ADGB Missense_Mutation p.S756F 0.20 deleterious(0) probably_damaging(0.94) TCGA-QQ-A8VG-01 6 152730338 152730338 C T SYNE1 Missense_Mutation p.M2135I 0.23 benign(0.012) TCGA-QQ-A8VG-01 6 161006150 161006150 C T LPA Missense_Mutation p.G1406E 0.08 tolerated(0.05) probably_damaging(1) TCGA-QQ-A8VG-01 6 26428148 26428148 C T BTN2A3P RNA 0.19 TCGA-QQ-A8VG-01 6 27860532 27860532 C T HIST1H2AM 3'UTR 0.12 TCGA-QQ-A8VG-01 6 27860533 27860533 C T HIST1H2AM 3'UTR 0.12 TCGA-QQ-A8VG-01 6 30458215 30458215 G A HLA-E Missense_Mutation p.R178K 0.23 tolerated_low_confidence(0.08) probably_damaging(0.995) TCGA-QQ-A8VG-01 6 30692042 30692042 G A TUBB Silent p.E401E 0.12 TCGA-QQ-A8VG-01 6 31113065 31113065 G A CCHCR1 Missense_Mutation p.P585L 0.11 deleterious(0.03) probably_damaging(0.964) TCGA-QQ-A8VG-01 6 31686914 31686914 G A LY6G6C Missense_Mutation p.L113F 0.19 tolerated_low_confidence(0.19) unknown(0) TCGA-QQ-A8VG-01 6 33408709 33408709 C T SYNGAP1 Missense_Mutation p.A627V 0.23 deleterious(0) probably_damaging(0.975) TCGA-QQ-A8VG-01 6 33689663 33689663 C T IP6K3 3'UTR 0.17 TCGA-QQ-A8VG-01 6 35051241 35051241 C T ANKS1A Silent p.I985I 0.12 TCGA-QQ-A8VG-01 6 36882452 36882452 C T C6orf89 Silent p.F233F 0.20 TCGA-QQ-A8VG-01 6 36931377 36931377 C T PI16 Missense_Mutation p.S420L 0.32 deleterious(0) possibly_damaging(0.871) TCGA-QQ-A8VG-01 6 39159187 39159187 G A KCNK5 Silent p.L327L 0.24 TCGA-QQ-A8VG-01 6 43019973 43019973 A G CUL7 Missense_Mutation p.I237T 0.15 deleterious(0.01) benign(0.073) TCGA-QQ-A8VG-01 6 44218310 44218310 G T HSP90AB1 Missense_Mutation p.D311Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 6 47681807 47681807 C T GPR115 Missense_Mutation p.P276S 0.24 tolerated(0.35) probably_damaging(1) TCGA-QQ-A8VG-01 6 70637854 70637854 G A COL19A1 Missense_Mutation p.R107Q 0.23 deleterious(0.01) unknown(0) TCGA-QQ-A8VG-01 6 84025054 84025054 C T ME1 Missense_Mutation p.E227K 0.18 deleterious(0) possibly_damaging(0.906) TCGA-QQ-A8VG-01 6 93952817 93952817 C T EPHA7 3'UTR 0.13 TCGA-QQ-A8VG-01 6 96653545 96653545 G A FUT9 3'UTR 0.35 TCGA-QQ-A8VG-01 6 96659505 96659505 G A FUT9 3'UTR 0.20 TCGA-QQ-A8VG-01 6 99283814 99283814 G A POU3F2 Silent p.R355R 0.17 TCGA-QQ-A8VG-01 6 99728980 99728980 G A FAXC 3'UTR 0.17 TCGA-QQ-A8VG-01 7 103301848 103301848 C T RELN Silent p.G472G 0.27 TCGA-QQ-A8VG-01 7 122759271 122759271 C T SLC13A1 Missense_Mutation p.G459E 0.31 deleterious(0) probably_damaging(0.981) TCGA-QQ-A8VG-01 7 122774576 122774576 G A SLC13A1 Missense_Mutation p.P274S 0.24 deleterious(0.01) probably_damaging(1) TCGA-QQ-A8VG-01 7 126078688 126078688 A T GRM8 3'UTR 0.17 TCGA-QQ-A8VG-01 7 126173739 126173739 C A GRM8 Missense_Mutation p.R566L 0.18 tolerated(0.51) probably_damaging(0.998) TCGA-QQ-A8VG-01 7 138583853 138583853 C T KIAA1549 Missense_Mutation p.G1232E 0.17 deleterious(0.04) probably_damaging(1) TCGA-QQ-A8VG-01 7 139723719 139723719 C T PARP12 3'UTR 0.14 TCGA-QQ-A8VG-01 7 141176847 141176847 C T TMEM178B 3'UTR 0.26 TCGA-QQ-A8VG-01 7 141427177 141427177 C T WEE2 Missense_Mutation p.S489F 0.33 tolerated(0.2) benign(0.007) TCGA-QQ-A8VG-01 7 141673292 141673292 G A TAS2R38 Silent p.F66F 0.16 TCGA-QQ-A8VG-01 7 141756678 141756678 G A MGAM Missense_Mutation p.G1210E 0.17 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 7 141762434 141762434 G A MGAM Missense_Mutation p.E1397K 0.20 deleterious(0.04) possibly_damaging(0.807) TCGA-QQ-A8VG-01 7 142239650 142239650 C T TRBV9 Missense_Mutation p.G77E 0.21 deleterious(0.03) possibly_damaging(0.521) TCGA-QQ-A8VG-01 7 142636666 142636666 C T C7orf34 Missense_Mutation p.S8F 0.26 deleterious_low_confidence(0.03) benign(0.07) TCGA-QQ-A8VG-01 7 142658142 142658142 G A KEL Silent p.A91A 0.19 TCGA-QQ-A8VG-01 7 143826692 143826692 C T OR2A14 Silent p.L163L 0.11 TCGA-QQ-A8VG-01 7 150325545 150325545 C T GIMAP6 Silent p.G47G 0.13 TCGA-QQ-A8VG-01 7 150936125 150936125 G A SMARCD3 3'UTR 0.31 TCGA-QQ-A8VG-01 7 20762706 20762706 C T ABCB5 Missense_Mutation p.S830F 0.19 deleterious(0) probably_damaging(0.987) TCGA-QQ-A8VG-01 7 2627481 2627481 G A IQCE Silent p.R338R 0.18 TCGA-QQ-A8VG-01 7 27934873 27934873 G A JAZF1 Silent p.T117T 0.28 TCGA-QQ-A8VG-01 7 35144265 35144265 G A DPY19L2P1 RNA 0.16 TCGA-QQ-A8VG-01 7 38305167 38305167 G A TRGC1 Silent p.F38F 0.21 TCGA-QQ-A8VG-01 7 41729832 41729832 G A INHBA Nonsense_Mutation p.Q233* 0.19 TCGA-QQ-A8VG-01 7 4304978 4304978 G C SDK1 Missense_Mutation p.A2202P 0.22 deleterious(0) benign(0.01) TCGA-QQ-A8VG-01 7 44005872 44005872 G A RP5-1165K10.2 RNA 0.20 TCGA-QQ-A8VG-01 7 45697426 45697426 G A ADCY1 Missense_Mutation p.D417N 0.15 deleterious(0) probably_damaging(0.968) TCGA-QQ-A8VG-01 7 5427839 5427839 G A TNRC18 Missense_Mutation p.A539V 0.21 probably_damaging(0.935) TCGA-QQ-A8VG-01 7 550608 550608 C T PDGFA Silent p.K97K 0.26 TCGA-QQ-A8VG-01 7 56174183 56174183 G A CHCHD2 5'UTR 0.16 TCGA-QQ-A8VG-01 7 73470692 73470692 C T ELN Silent p.I414I 0.12 TCGA-QQ-A8VG-01 7 74197917 74197917 C T NCF1 Silent p.S208S 0.15 TCGA-QQ-A8VG-01 7 75958249 75958249 G A YWHAG 3'UTR 0.13 TCGA-QQ-A8VG-01 7 82579048 82579048 G A PCLO Missense_Mutation p.S3619F 0.27 unknown(0) TCGA-QQ-A8VG-01 7 91793031 91793031 C T LRRD1 Missense_Mutation p.G496R 0.12 deleterious(0.04) possibly_damaging(0.768) TCGA-QQ-A8VG-01 7 99358558 99358558 G A CYP3A4 Missense_Mutation p.P434S 0.16 deleterious(0) probably_damaging(0.991) TCGA-QQ-A8VG-01 8 101270306 101270306 G A RNF19A 3'UTR 0.15 TCGA-QQ-A8VG-01 8 105260948 105260948 C T RIMS2 Missense_Mutation p.R1166C 0.20 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-QQ-A8VG-01 8 110986219 110986219 G A KCNV1 Silent p.F133F 0.12 TCGA-QQ-A8VG-01 8 139833396 139833396 C T COL22A1 Missense_Mutation p.D410N 0.13 unknown(0) TCGA-QQ-A8VG-01 8 144734708 144734708 C T ZNF623 3'UTR 0.27 TCGA-QQ-A8VG-01 8 144903997 144903997 G A PUF60 Silent p.A66A 0.27 TCGA-QQ-A8VG-01 8 21931249 21931249 C T DMTN Silent p.S246S 0.15 TCGA-QQ-A8VG-01 8 22033795 22033795 C T BMP1 Silent p.V134V 0.10 TCGA-QQ-A8VG-01 8 24193162 24193162 G A ADAM28 Intron 0.14 TCGA-QQ-A8VG-01 8 24364997 24364997 C T ADAM7 Missense_Mutation p.P738L 0.15 deleterious(0.05) benign(0.004) TCGA-QQ-A8VG-01 8 2966129 2966129 G A CSMD1 Silent p.F2250F 0.19 TCGA-QQ-A8VG-01 8 42608333 42608333 C T CHRNA6 Missense_Mutation p.G492R 0.06 tolerated(0.51) benign(0.004) TCGA-QQ-A8VG-01 8 57353921 57353921 G A PENK Silent p.A238A 0.12 TCGA-QQ-A8VG-01 8 57353922 57353922 G A PENK Missense_Mutation p.A238V 0.13 tolerated(0.08) benign(0.356) TCGA-QQ-A8VG-01 8 62415936 62415936 G A ASPH Silent p.R753R 0.16 TCGA-QQ-A8VG-01 8 67772313 67772313 C T SGK3 3'UTR 0.19 TCGA-QQ-A8VG-01 8 69552622 69552622 G A C8orf34 Missense_Mutation p.D373N 0.16 tolerated(0.1) benign(0.23) TCGA-QQ-A8VG-01 8 8235440 8235440 G A SGK223 Missense_Mutation p.T160I 0.18 benign(0.118) TCGA-QQ-A8VG-01 8 86392944 86392944 G A CA2 Missense_Mutation p.E237K 0.22 tolerated(0.55) benign(0.036) TCGA-QQ-A8VG-01 8 89086866 89086866 C T MMP16 Missense_Mutation p.E397K 0.14 deleterious(0.01) probably_damaging(0.937) TCGA-QQ-A8VG-01 8 95746906 95746906 C T DPY19L4 Missense_Mutation p.A59V 0.15 deleterious(0) probably_damaging(0.983) TCGA-QQ-A8VG-01 8 9635488 9635488 C T TNKS 3'UTR 0.25 TCGA-QQ-A8VG-01 8 97620692 97620692 C T SDC2 Silent p.L146L 0.20 TCGA-QQ-A8VG-01 9 101806853 101806853 G A COL15A1 Missense_Mutation p.E860K 0.36 deleterious(0) probably_damaging(0.989) TCGA-QQ-A8VG-01 9 1056594 1056594 C T DMRT2 Missense_Mutation p.P336L 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-QQ-A8VG-01 9 107555470 107555470 C T ABCA1 Missense_Mutation p.R1873K 0.36 tolerated(0.38) benign(0.013) TCGA-QQ-A8VG-01 9 111935513 111935513 C T EPB41L4B 3'UTR 0.32 TCGA-QQ-A8VG-01 9 115038213 115038213 G A PTBP3 Missense_Mutation p.P73S 0.30 deleterious(0.01) probably_damaging(0.94) TCGA-QQ-A8VG-01 9 116023918 116023918 C T SLC31A1 3'UTR 0.52 TCGA-QQ-A8VG-01 9 121929585 121929585 G A BRINP1 Missense_Mutation p.S688F 0.20 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-QQ-A8VG-01 9 122075558 122075558 C T BRINP1 Missense_Mutation p.E26K 0.31 tolerated_low_confidence(0.83) benign(0.004) TCGA-QQ-A8VG-01 9 126139560 126139560 G A CRB2 3'UTR 0.35 TCGA-QQ-A8VG-01 9 131516096 131516096 G A ZER1 Missense_Mutation p.R101C 0.42 tolerated(0.1) possibly_damaging(0.549) TCGA-QQ-A8VG-01 9 133370324 133370324 G A ASS1 Silent p.G347G 0.35 TCGA-QQ-A8VG-01 9 135042113 135042113 C T NTNG2 5'UTR 0.26 TCGA-QQ-A8VG-01 9 135277166 135277166 G A TTF1 Missense_Mutation p.A348V 0.31 tolerated_low_confidence(0.06) benign(0.297) TCGA-QQ-A8VG-01 9 135668122 135668122 C T AK8 Silent p.L340L 0.36 TCGA-QQ-A8VG-01 9 139977206 139977206 C T UAP1L1 3'UTR 0.29 TCGA-QQ-A8VG-01 9 15578931 15578931 C T CCDC171 Silent p.L88L 0.28 TCGA-QQ-A8VG-01 9 17796216 17796216 A G SH3GL2 3'UTR 0.46 TCGA-QQ-A8VG-01 9 17796218 17796218 T A SH3GL2 3'UTR 0.46 TCGA-QQ-A8VG-01 9 34458409 34458409 G A FAM219A 5'UTR 0.45 TCGA-QQ-A8VG-01 9 34552181 34552181 T G CNTFR Missense_Mutation p.T366P 0.40 tolerated_low_confidence(0.07) unknown(0) TCGA-QQ-A8VG-01 9 37440073 37440073 T C ZBTB5 3'UTR 0.33 TCGA-QQ-A8VG-01 9 43626627 43626627 C T SPATA31A6 Missense_Mutation p.R687Q 0.13 tolerated(0.09) benign(0.058) TCGA-QQ-A8VG-01 9 43884963 43884963 C T CNTNAP3B Silent p.V752V 0.12 TCGA-QQ-A8VG-01 9 990189 990189 G A DMRT3 Silent p.E201E 0.32 TCGA-QQ-A8VG-01 X 107424153 107424153 C T COL4A6 Missense_Mutation p.G667E 0.39 probably_damaging(1) TCGA-QQ-A8VG-01 X 107898618 107898618 G A COL4A5 Missense_Mutation p.D1102N 0.39 unknown(0) TCGA-QQ-A8VG-01 X 140994946 140994946 G A MAGEC1 Missense_Mutation p.G586R 0.25 tolerated_low_confidence(0.14) probably_damaging(0.953) TCGA-QQ-A8VG-01 X 148062301 148062301 C T AFF2 Missense_Mutation p.P1202S 0.46 deleterious(0.04) benign(0.021) TCGA-QQ-A8VG-01 X 153222933 153222933 C T HCFC1 Missense_Mutation p.D729N 0.36 tolerated(0.05) probably_damaging(0.991) TCGA-QQ-A8VG-01 X 153583286 153583286 G A FLNA Silent p.F1708F 0.31 TCGA-QQ-A8VG-01 X 15721141 15721141 C T CA5BP1 RNA 0.35 TCGA-QQ-A8VG-01 X 24229432 24229432 G A ZFX Missense_Mutation p.R786Q 0.42 tolerated(0.05) probably_damaging(0.996) TCGA-QQ-A8VG-01 X 27766187 27766187 G A DCAF8L2 Missense_Mutation p.R392K 0.35 deleterious(0.04) probably_damaging(0.991) TCGA-QQ-A8VG-01 X 3235787 3235787 C T MXRA5 Missense_Mutation p.A1979T 0.38 tolerated(0.22) benign(0.141) TCGA-QQ-A8VG-01 X 3242793 3242793 G A MXRA5 Silent p.F311F 0.29 TCGA-QQ-A8VG-01 X 36163043 36163043 G A CHDC2 3'UTR 0.24 TCGA-QQ-A8VG-01 X 53966719 53966719 G A PHF8 Silent p.A996A 0.32 TCGA-QQ-A8VG-01 X 70462039 70462039 G A ZMYM3 Silent p.V1261V 0.37 TCGA-QQ-A8VH-01 10 27499800 27499800 G T ACBD5 Missense_Mutation p.H383N 0.50 deleterious(0.05) possibly_damaging(0.549) TCGA-QQ-A8VH-01 10 88418324 88418324 C T OPN4 Silent p.L181L 0.69 TCGA-QQ-A8VH-01 11 121037373 121037373 G A TECTA Missense_Mutation p.G1824S 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-QQ-A8VH-01 11 19184856 19184856 C A ZDHHC13 Missense_Mutation p.A372E 0.27 tolerated(0.3) benign(0.01) TCGA-QQ-A8VH-01 11 47711627 47711627 C - AGBL2 Splice_Site p.X544_splice 0.21 TCGA-QQ-A8VH-01 11 77378084 77378084 C T RSF1 Missense_Mutation p.A1402T 0.40 deleterious_low_confidence(0.01) benign(0.338) TCGA-QQ-A8VH-01 12 110929782 110929782 A C VPS29 3'UTR 0.14 TCGA-QQ-A8VH-01 12 129278545 129278545 G A SLC15A4 3'UTR 0.37 TCGA-QQ-A8VH-01 12 56992207 56992209 GAG - BAZ2A 3'UTR 0.38 TCGA-QQ-A8VH-01 12 86198968 86198968 T A RASSF9 Nonsense_Mutation p.K274* 0.42 TCGA-QQ-A8VH-01 14 106805400 106805400 A T IGHV4-31 Missense_Mutation p.W55R 0.42 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-QQ-A8VH-01 14 24590047 24590047 G T DCAF11 Missense_Mutation p.G365C 0.52 deleterious(0) probably_damaging(0.996) TCGA-QQ-A8VH-01 14 95560464 95560464 C T DICER1 Missense_Mutation p.D1709N 0.86 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VH-01 14 97031630 97031630 T A PAPOLA 3'UTR 0.09 TCGA-QQ-A8VH-01 15 101438364 101438364 C G ALDH1A3 Missense_Mutation p.P286R 0.53 deleterious(0) probably_damaging(1) TCGA-QQ-A8VH-01 15 41195687 41195687 G T VPS18 3'UTR 0.22 TCGA-QQ-A8VH-01 15 63334957 63334957 C G TPM1 5'UTR 0.78 TCGA-QQ-A8VH-01 16 14723970 14723970 T A PARN Missense_Mutation p.R5W 0.07 deleterious(0) possibly_damaging(0.86) TCGA-QQ-A8VH-01 16 30740407 30740407 A G SRCAP Missense_Mutation p.T1927A 0.07 benign(0.311) TCGA-QQ-A8VH-01 17 20239389 20239389 A T RN7SL17P 5'Flank 0.03 TCGA-QQ-A8VH-01 17 29553702 29553702 G C NF1 Missense_Mutation p.G751R 0.47 deleterious(0) probably_damaging(0.998) TCGA-QQ-A8VH-01 17 74288739 74288739 A T QRICH2 Nonsense_Mutation p.L524* 0.45 TCGA-QQ-A8VH-01 17 7578443 7578443 A T TP53 Missense_Mutation p.Y163N 0.80 deleterious(0) probably_damaging(1) TCGA-QQ-A8VH-01 19 37440596 37440596 C T ZNF568 Missense_Mutation p.L181F 0.11 tolerated(0.95) benign(0.002) TCGA-QQ-A8VH-01 19 45912057 45912057 G A CD3EAP Silent p.E277E 0.37 TCGA-QQ-A8VH-01 1 157512815 157512815 G T FCRL5 Nonsense_Mutation p.Y319* 0.18 TCGA-QQ-A8VH-01 1 159558527 159558527 A G APCS 3'UTR 0.08 TCGA-QQ-A8VH-01 1 161022582 161022582 C T ARHGAP30 Missense_Mutation p.E224K 0.33 tolerated(0.07) possibly_damaging(0.786) TCGA-QQ-A8VH-01 1 16907298 16907298 C T NBPF1 Silent p.L511L 0.08 TCGA-QQ-A8VH-01 1 178006883 178006883 A C RP11-568K15.1 RNA 0.19 TCGA-QQ-A8VH-01 1 210977435 210977435 G T KCNH1 Nonsense_Mutation p.Y512* 0.37 TCGA-QQ-A8VH-01 1 211922362 211922362 G T LPGAT1 3'UTR 0.17 TCGA-QQ-A8VH-01 1 26797449 26797449 G T DHDDS 3'UTR 0.20 TCGA-QQ-A8VH-01 1 29630418 29630418 C T PTPRU Missense_Mutation p.S853F 0.50 tolerated(0.71) possibly_damaging(0.904) TCGA-QQ-A8VH-01 1 6266767 6266767 C G RNF207 Missense_Mutation p.L58V 0.07 deleterious(0.05) benign(0.072) TCGA-QQ-A8VH-01 1 67160987 67160987 C G SGIP1 Intron 0.42 TCGA-QQ-A8VH-01 22 18898464 18898464 G A DGCR6 Missense_Mutation p.D146N 0.27 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VH-01 22 32755975 32755975 C G RFPL3S 3'UTR 0.23 TCGA-QQ-A8VH-01 2 163136618 163136618 C T IFIH1 Missense_Mutation p.C510Y 0.47 deleterious(0) probably_damaging(0.97) TCGA-QQ-A8VH-01 2 191555552 191555552 C G NAB1 3'UTR 0.40 TCGA-QQ-A8VH-01 2 196799353 196799353 C A DNAH7 Missense_Mutation p.V1145F 0.42 deleterious(0.04) benign(0.03) TCGA-QQ-A8VH-01 2 209309566 209309566 C G PTH2R Missense_Mutation p.F269L 0.07 deleterious(0.04) benign(0.381) TCGA-QQ-A8VH-01 2 217559222 217559222 G A IGFBP5 Silent p.L93L 0.39 TCGA-QQ-A8VH-01 2 25457115 25457115 T C DNMT3A 3'UTR 0.42 TCGA-QQ-A8VH-01 2 27466446 27466446 C T CAD 3'UTR 0.46 TCGA-QQ-A8VH-01 2 48936105 48936105 G A LHCGR Missense_Mutation p.A221V 0.38 tolerated(0.25) benign(0.196) TCGA-QQ-A8VH-01 2 90108972 90108972 C G IGKV6D-41 Silent p.P79P 0.06 TCGA-QQ-A8VH-01 3 147132472 147132472 G A ZIC1 3'UTR 0.06 TCGA-QQ-A8VH-01 3 19432128 19432128 G T KCNH8 Missense_Mutation p.V323L 0.31 deleterious(0.01) possibly_damaging(0.84) TCGA-QQ-A8VH-01 3 25668103 25668103 C G TOP2B Missense_Mutation p.L719F 0.06 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VH-01 3 9470539 9470539 C T SETD5 5'UTR 0.39 TCGA-QQ-A8VH-01 4 100571171 100571171 G A RP11-766F14.2 Silent p.A1545A 0.50 TCGA-QQ-A8VH-01 4 100820956 100820956 G A DNAJB14 3'UTR 0.15 TCGA-QQ-A8VH-01 4 106629991 106629991 G T GSTCD 5'UTR 0.46 TCGA-QQ-A8VH-01 4 55603360 55603360 T C KIT Missense_Mutation p.C906R 0.17 deleterious(0) probably_damaging(0.999) TCGA-QQ-A8VH-01 4 72412066 72412066 G A SLC4A4 Splice_Site p.X815_splice 0.47 TCGA-QQ-A8VH-01 5 112128170 112128170 G A APC Missense_Mutation p.E225K 0.49 possibly_damaging(0.634) TCGA-QQ-A8VH-01 5 57790747 57790747 G T GAPT Missense_Mutation p.E128D 0.42 deleterious(0.01) probably_damaging(0.918) TCGA-QQ-A8VH-01 5 94027851 94027851 A G ANKRD32 Missense_Mutation p.Q862R 0.10 deleterious(0) probably_damaging(0.993) TCGA-QQ-A8VH-01 6 137519046 137519046 G T IFNGR1 3'UTR 0.22 TCGA-QQ-A8VH-01 6 146256227 146256227 G C SHPRH Missense_Mutation p.R936G 0.19 deleterious(0) probably_damaging(0.997) TCGA-QQ-A8VH-01 6 163149120 163149120 A G PACRG Intron 0.75 TCGA-QQ-A8VH-01 6 25495420 25495420 A C LRRC16A Silent p.T434T 0.05 TCGA-QQ-A8VH-01 6 29431070 29431070 C G OR2H1 3'UTR 0.39 TCGA-QQ-A8VH-01 6 31868321 31868321 G C ZBTB12 Missense_Mutation p.S254R 0.40 tolerated(0.51) benign(0.307) TCGA-QQ-A8VH-01 6 33411019 33411019 C T SYNGAP1 Missense_Mutation p.S897L 0.49 tolerated(0.19) possibly_damaging(0.785) TCGA-QQ-A8VH-01 6 43752708 43752708 T C VEGFA 3'Flank 0.49 TCGA-QQ-A8VH-01 6 46655966 46655966 G A TDRD6 Missense_Mutation p.G34E 0.09 deleterious(0) probably_damaging(1) TCGA-QQ-A8VH-01 6 47252150 47252150 G T TNFRSF21 Missense_Mutation p.S256Y 0.38 deleterious(0.01) benign(0.157) TCGA-QQ-A8VH-01 7 132192620 132192620 G T PLXNA4 Missense_Mutation p.S278Y 0.25 deleterious(0) probably_damaging(1) TCGA-QQ-A8VH-01 7 4169647 4169647 C G SDK1 Nonsense_Mutation p.Y1349* 0.46 TCGA-QQ-A8VH-01 7 6202831 6202831 A T CYTH3 3'UTR 0.21 TCGA-QQ-A8VH-01 8 144801595 144801595 T A MAPK15 Missense_Mutation p.S222T 0.87 deleterious(0) probably_damaging(0.978) TCGA-QQ-A8VH-01 8 41467400 41467400 G C AGPAT6 Missense_Mutation p.Q154H 0.80 tolerated(0.67) benign(0) TCGA-QQ-A8VH-01 9 136270476 136270476 C G C9orf96 Missense_Mutation p.F658L 0.45 tolerated_low_confidence(0.64) benign(0.016) TCGA-QQ-A8VH-01 X 153583396 153583396 T C FLNA Missense_Mutation p.I1672V 0.46 tolerated(0.06) benign(0.07) TCGA-QQ-A8VH-01 X 37026574 37026574 G A FAM47C Missense_Mutation p.A31T 0.41 tolerated(0.23) benign(0.142) TCGA-QQ-A8VH-01 X 37026659 37026659 G A FAM47C Missense_Mutation p.R59H 0.38 tolerated(0.07) benign(0.082) TCGA-QQ-A8VH-01 X 54839433 54839433 A C MAGED2 Missense_Mutation p.M381L 0.07 deleterious(0.01) benign(0.199) TCGA-QQ-A8VH-01 X 70520091 70520091 G A NONO 3'UTR 0.54 TCGA-RN-A68Q-01 11 107975809 107975809 A T CUL5 3'UTR 0.09 TCGA-RN-A68Q-01 12 38710631 38710631 G A ALG10B 5'UTR 0.03 TCGA-RN-A68Q-01 12 6143932 6143932 C T VWF Silent p.T869T 0.20 TCGA-RN-A68Q-01 15 42433475 42433475 G A PLA2G4F 3'UTR 0.16 TCGA-RN-A68Q-01 16 4390943 4390943 C G PAM16 Missense_Mutation p.G90A 0.04 deleterious(0) probably_damaging(0.936) TCGA-RN-A68Q-01 16 8862051 8862051 C G ABAT Missense_Mutation p.A202G 0.19 tolerated(0.26) benign(0.001) TCGA-RN-A68Q-01 17 7128477 7128477 C T ACADVL 3'UTR 0.10 TCGA-RN-A68Q-01 19 814640 814640 C G LPPR3 Missense_Mutation p.E237Q 0.16 tolerated_low_confidence(0.65) unknown(0) TCGA-RN-A68Q-01 19 9325401 9325401 G A OR7D4 Missense_Mutation p.T38M 0.17 deleterious(0.02) benign(0.161) TCGA-RN-A68Q-01 19 9965243 9965243 G A OLFM2 Silent p.D328D 0.27 TCGA-RN-A68Q-01 20 46286838 46286838 T C SULF2 3'UTR 0.18 TCGA-RN-A68Q-01 21 27253100 27253100 A G APP 3'UTR 0.12 TCGA-RN-A68Q-01 21 46101928 46101928 G A KRTAP12-1 Silent p.P37P 0.23 TCGA-RN-A68Q-01 22 38374051 38374052 - GTACTT SOX10 In_Frame_Ins p.K172_Y173dup 0.26 TCGA-RN-A68Q-01 22 41605733 41605733 G A L3MBTL2 Missense_Mutation p.E20K 0.03 tolerated_low_confidence(0.08) possibly_damaging(0.899) TCGA-RN-A68Q-01 22 46509552 46509552 A G FLJ27365 3'UTR 0.13 TCGA-RN-A68Q-01 2 113535602 113535602 C A IL1A Missense_Mutation p.V193L 0.12 tolerated(0.19) benign(0) TCGA-RN-A68Q-01 3 188596129 188596129 C T LPP 3'UTR 0.11 TCGA-RN-A68Q-01 3 197894586 197894586 G A FAM157A RNA 0.19 TCGA-RN-A68Q-01 4 123332445 123332445 G A ADAD1 Missense_Mutation p.C306Y 0.06 tolerated(0.07) probably_damaging(0.972) TCGA-RN-A68Q-01 4 2241964 2241964 T C HAUS3 Missense_Mutation p.N237S 0.16 tolerated(0.57) benign(0.036) TCGA-RN-A68Q-01 5 154191148 154191148 A T LARP1 Missense_Mutation p.K933I 0.22 deleterious(0.01) benign(0.133) TCGA-RN-A68Q-01 6 28116553 28116553 T C ZKSCAN8 Missense_Mutation p.V123A 0.09 deleterious(0) benign(0.223) TCGA-RN-A68Q-01 8 145730424 145730424 C T GPT Silent p.D135D 0.19 TCGA-RN-A68Q-01 8 74333665 74333665 T C STAU2 Missense_Mutation p.N552S 0.04 deleterious_low_confidence(0.02) benign(0.016) TCGA-RN-A68Q-01 8 81399506 81399506 A G ZBTB10 Missense_Mutation p.N154S 0.05 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-RN-A68Q-01 9 19102766 19102766 A G HAUS6 5'UTR 0.08 TCGA-RN-A68Q-01 X 152615156 152615156 C A ZNF275 3'UTR 0.05 TCGA-RN-AAAQ-01 10 126672224 126672224 G T ZRANB1 Missense_Mutation p.K625N 0.20 deleterious(0) probably_damaging(0.996) TCGA-RN-AAAQ-01 11 2323129 2323129 C G C11orf21 5'UTR 0.12 TCGA-RN-AAAQ-01 11 30034250 30034250 G T KCNA4 5'UTR 0.17 TCGA-RN-AAAQ-01 11 31115595 31115595 A G DCDC1 Splice_Site p.X706_splice 0.41 TCGA-RN-AAAQ-01 11 45868724 45868724 T G CRY2 5'Flank 0.28 TCGA-RN-AAAQ-01 11 71818438 71818438 T C ANAPC15 3'Flank 0.21 TCGA-RN-AAAQ-01 12 107974745 107974745 G A BTBD11 Intron 0.24 TCGA-RN-AAAQ-01 12 119554776 119554778 AAG - SRRM4 In_Frame_Del p.K137del 0.11 TCGA-RN-AAAQ-01 12 52962039 52962039 G A KRT74 Silent p.R423R 0.08 TCGA-RN-AAAQ-01 12 58176534 58176534 T G TSFM 5'Flank 0.12 TCGA-RN-AAAQ-01 12 66856870 66856870 A T GRIP1 Nonsense_Mutation p.C292* 0.10 TCGA-RN-AAAQ-01 12 93796062 93796062 T A NUDT4 3'UTR 0.22 TCGA-RN-AAAQ-01 12 94772610 94772610 A T CCDC41 Missense_Mutation p.V253E 0.19 deleterious(0.02) possibly_damaging(0.615) TCGA-RN-AAAQ-01 13 47409498 47409498 C T HTR2A Missense_Mutation p.R297Q 0.24 tolerated(0.26) possibly_damaging(0.753) TCGA-RN-AAAQ-01 14 104498396 104498396 C T TDRD9 Missense_Mutation p.H1161Y 0.07 tolerated(0.9) benign(0.002) TCGA-RN-AAAQ-01 14 23540434 23540434 T G ACIN1 Intron 0.19 TCGA-RN-AAAQ-01 14 30046656 30046656 G C PRKD1 Missense_Mutation p.Q843E 0.09 deleterious(0.04) benign(0.021) TCGA-RN-AAAQ-01 14 45414684 45414684 G A KLHL28 Missense_Mutation p.R150C 0.33 tolerated(0.09) benign(0.001) TCGA-RN-AAAQ-01 14 47309397 47309397 A G MDGA2 3'UTR 0.20 TCGA-RN-AAAQ-01 14 86088593 86088593 T C FLRT2 Silent p.P245P 0.30 TCGA-RN-AAAQ-01 16 27448886 27448886 C T IL21R Missense_Mutation p.A77V 0.28 tolerated(0.34) benign(0.037) TCGA-RN-AAAQ-01 16 76555115 76555115 C T CNTNAP4 Missense_Mutation p.A742V 0.08 deleterious(0.04) possibly_damaging(0.905) TCGA-RN-AAAQ-01 17 33336922 33336922 C A RFFL 3'UTR 0.17 TCGA-RN-AAAQ-01 17 8048212 8048212 T C PER1 Missense_Mutation p.Y773C 0.19 deleterious(0.02) probably_damaging(0.939) TCGA-RN-AAAQ-01 18 18535007 18535007 T G ROCK1 Splice_Site p.X1198_splice 0.06 TCGA-RN-AAAQ-01 18 43565400 43565400 G A PSTPIP2 3'UTR 0.11 TCGA-RN-AAAQ-01 18 8825190 8825190 G T SOGA2 Nonsense_Mutation p.G1228* 0.19 TCGA-RN-AAAQ-01 19 12542630 12542630 T C ZNF443 Missense_Mutation p.N119S 0.34 tolerated(0.05) benign(0.049) TCGA-RN-AAAQ-01 19 17396619 17396619 G A ANKLE1 Missense_Mutation p.E556K 0.23 deleterious(0.01) benign(0.199) TCGA-RN-AAAQ-01 19 19349080 19349080 G A NCAN Missense_Mutation p.R1090H 0.15 tolerated(0.72) benign(0.002) TCGA-RN-AAAQ-01 19 34263521 34263521 C G CHST8 Missense_Mutation p.N276K 0.29 deleterious(0) possibly_damaging(0.874) TCGA-RN-AAAQ-01 19 4428833 4428833 C A CHAF1A Missense_Mutation p.P517H 0.29 deleterious(0.02) probably_damaging(0.996) TCGA-RN-AAAQ-01 19 54466532 54466532 T G CACNG8 Missense_Mutation p.Y46D 0.40 deleterious(0) probably_damaging(0.994) TCGA-RN-AAAQ-01 19 58264667 58264667 T C AC003006.7 Missense_Mutation p.Y57H 0.17 tolerated(0.67) benign(0.022) TCGA-RN-AAAQ-01 1 150549410 150549410 C A MCL1 3'UTR 0.49 TCGA-RN-AAAQ-01 1 202092707 202092722 GTGCCCTTCATGGAGG - GPR37L1 Splice_Site p.X206_splice 0.18 TCGA-RN-AAAQ-01 1 236371763 236371763 T C GPR137B 3'UTR 0.36 TCGA-RN-AAAQ-01 20 2291705 2291705 A G TGM3 Missense_Mutation p.Q157R 0.08 deleterious(0.01) benign(0.217) TCGA-RN-AAAQ-01 20 33879944 33879944 C T FAM83C Missense_Mutation p.R55Q 0.12 tolerated(0.4) benign(0.069) TCGA-RN-AAAQ-01 20 61940782 61940782 G A COL20A1 Silent p.A346A 0.06 TCGA-RN-AAAQ-01 21 10862639 10862639 G A IGHV1OR21-1 Silent p.R6R 0.12 TCGA-RN-AAAQ-01 21 35469189 35469189 A G SLC5A3 Silent p.P564P 0.24 TCGA-RN-AAAQ-01 22 29927861 29927861 T C THOC5 Missense_Mutation p.Y269C 0.11 deleterious(0) probably_damaging(0.98) TCGA-RN-AAAQ-01 2 164464369 164464369 C T FIGN 3'UTR 0.14 TCGA-RN-AAAQ-01 2 71651102 71651102 A C ZNF638 Silent p.I1486I 0.23 TCGA-RN-AAAQ-01 3 12203603 12203603 C T TIMP4 5'Flank 0.14 TCGA-RN-AAAQ-01 3 97983309 97983309 C T OR5H6 Silent p.L61L 0.13 TCGA-RN-AAAQ-01 4 128665946 128665946 G A SLC25A31 Missense_Mutation p.E118K 0.07 tolerated(0.9) benign(0.073) TCGA-RN-AAAQ-01 4 149356399 149356399 C T NR3C2 Silent p.S538S 0.25 TCGA-RN-AAAQ-01 4 184634471 184634471 G A TRAPPC11 3'UTR 0.38 TCGA-RN-AAAQ-01 4 265156 265156 G A ZNF732 Missense_Mutation p.T497I 0.27 deleterious(0.03) benign(0.251) TCGA-RN-AAAQ-01 4 72121054 72121054 A G SLC4A4 Missense_Mutation p.Y64C 0.19 tolerated(0.19) benign(0.401) TCGA-RN-AAAQ-01 4 83978560 83978560 A T COPS4 Silent p.A238A 0.12 TCGA-RN-AAAQ-01 5 138729105 138729108 TGCC - PROB1 Frame_Shift_Del p.G555Lfs*29 0.21 TCGA-RN-AAAQ-01 5 149466092 149466092 G A CSF1R 5'UTR 0.12 TCGA-RN-AAAQ-01 5 41172432 41172432 C A C6 Missense_Mutation p.A396S 0.22 tolerated(0.19) benign(0.003) TCGA-RN-AAAQ-01 6 134301277 134301277 G C TBPL1 Missense_Mutation p.S5T 0.18 tolerated(0.2) benign(0.035) TCGA-RN-AAAQ-01 6 3105965 3105965 C T RIPK1 Missense_Mutation p.P419L 0.57 deleterious(0) probably_damaging(0.988) TCGA-RN-AAAQ-01 7 140154302 140154302 C T MKRN1 3'UTR 0.22 TCGA-RN-AAAQ-01 7 4153058 4153058 G A SDK1 Missense_Mutation p.R1191Q 0.31 tolerated(0.32) benign(0.237) TCGA-RN-AAAQ-01 7 71036308 71036308 G T WBSCR17 Missense_Mutation p.R334M 0.16 deleterious(0) probably_damaging(0.996) TCGA-RN-AAAQ-01 7 72643824 72643824 T C NCF1B RNA 0.10 TCGA-RN-AAAQ-01 7 7571323 7571323 C T COL28A1 Missense_Mutation p.D113N 0.19 tolerated(0.53) probably_damaging(1) TCGA-RN-AAAQ-01 7 99050052 99050052 C T CPSF4 Missense_Mutation p.P187S 0.07 tolerated(0.75) benign(0.001) TCGA-RN-AAAQ-01 8 22960554 22960554 T C TNFRSF10C 5'UTR 0.34 TCGA-RN-AAAQ-01 8 57077131 57077131 A T PLAG1 3'UTR 0.04 TCGA-RN-AAAQ-01 9 96859891 96859891 A G PTPDC1 Missense_Mutation p.K346R 0.11 tolerated(0.37) benign(0.008) TCGA-RN-AAAQ-01 X 50213484 50213484 G T DGKK RNA 0.40 TCGA-RN-AAAQ-01 X 75648225 75648225 C A MAGEE1 5'UTR 0.36 TCGA-SG-A6Z4-01 10 1313200 1313200 G A ADARB2 Missense_Mutation p.T381M 0.56 deleterious(0) benign(0.033) TCGA-SG-A6Z4-01 10 76854531 76854531 G A DUSP13 Missense_Mutation p.T217M 0.52 deleterious(0.04) possibly_damaging(0.674) TCGA-SG-A6Z4-01 11 16838747 16838747 C T PLEKHA7 Missense_Mutation p.R489Q 0.16 tolerated(0.62) benign(0.054) TCGA-SG-A6Z4-01 11 4825681 4825681 T - OR52R1 5'Flank 0.12 TCGA-SG-A6Z4-01 11 57996225 57996225 C T OR10Q1 Missense_Mutation p.M41I 0.79 tolerated(0.38) benign(0.064) TCGA-SG-A6Z4-01 11 70281823 70281823 G A CTTN Missense_Mutation p.C584Y 0.38 deleterious_low_confidence(0.01) benign(0) TCGA-SG-A6Z4-01 12 21028281 21028281 G A SLCO1B3 Silent p.P280P 0.26 TCGA-SG-A6Z4-01 12 53086400 53086400 G A KRT77 Missense_Mutation p.S411L 0.52 deleterious(0.03) benign(0.1) TCGA-SG-A6Z4-01 13 27333536 27333536 G T GPR12 Nonsense_Mutation p.Y143* 0.17 TCGA-SG-A6Z4-01 13 70681572 70681572 G T KLHL1 Missense_Mutation p.S87Y 0.19 deleterious_low_confidence(0.03) benign(0.17) TCGA-SG-A6Z4-01 14 106235615 106235615 G A IGHG3 Missense_Mutation p.R365C 0.26 deleterious(0) benign(0.099) TCGA-SG-A6Z4-01 14 33014696 33014696 T C AKAP6 Silent p.A279A 0.33 TCGA-SG-A6Z4-01 15 65295423 65295423 C A MTFMT Missense_Mutation p.A383S 0.17 tolerated(0.25) benign(0.013) TCGA-SG-A6Z4-01 15 74564053 74564053 C T CCDC33 Missense_Mutation p.R186W 0.25 deleterious(0.04) benign(0.14) TCGA-SG-A6Z4-01 16 1250294 1250294 C T CACNA1H Missense_Mutation p.T281M 0.26 tolerated(0.06) probably_damaging(0.956) TCGA-SG-A6Z4-01 16 1961876 1961876 G A HS3ST6 Silent p.S217S 0.43 TCGA-SG-A6Z4-01 16 85694912 85694912 G T GSE1 Nonsense_Mutation p.E601* 0.29 TCGA-SG-A6Z4-01 17 7574034 7574034 C G TP53 Splice_Site p.X332_splice 0.85 TCGA-SG-A6Z4-01 18 50985606 50985606 C T DCC Missense_Mutation p.R1133W 0.64 deleterious(0) probably_damaging(0.982) TCGA-SG-A6Z4-01 19 11832715 11832715 T C ZNF823 Missense_Mutation p.H545R 0.59 deleterious(0) probably_damaging(1) TCGA-SG-A6Z4-01 19 51538102 51538102 T G KLK12 5'UTR 0.17 TCGA-SG-A6Z4-01 19 54395787 54395787 G A PRKCG Silent p.E237E 0.30 TCGA-SG-A6Z4-01 1 110768794 110768794 C T KCNC4 Missense_Mutation p.R605W 0.74 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-SG-A6Z4-01 1 116379191 116379191 A T NHLH2 3'Flank 0.08 TCGA-SG-A6Z4-01 1 160209917 160209917 C T DCAF8 Missense_Mutation p.R98H 0.09 tolerated(0.37) benign(0.001) TCGA-SG-A6Z4-01 1 183897307 183897307 A T RGL1 3'UTR 0.19 TCGA-SG-A6Z4-01 1 190067251 190067251 T A BRINP3 Missense_Mutation p.K733M 0.94 deleterious(0) probably_damaging(0.997) TCGA-SG-A6Z4-01 1 197127605 197127605 T C ZBTB41 3'UTR 0.86 TCGA-SG-A6Z4-01 1 27107692 27107692 A - ARID1A 3'UTR 0.12 TCGA-SG-A6Z4-01 1 38442606 38442606 C T SF3A3 Missense_Mutation p.D319N 0.45 deleterious(0.01) benign(0.046) TCGA-SG-A6Z4-01 1 39752957 39752957 G T MACF1 Splice_Site p.X508_splice 0.49 TCGA-SG-A6Z4-01 1 42045550 42045550 G A HIVEP3 Missense_Mutation p.P1640L 0.05 probably_damaging(0.999) TCGA-SG-A6Z4-01 1 52554055 52554055 C A BTF3L4 3'UTR 0.60 TCGA-SG-A6Z4-01 20 22561807 22561807 A C FOXA2 3'UTR 0.10 TCGA-SG-A6Z4-01 21 43905899 43905899 G A RSPH1 Silent p.T127T 0.14 TCGA-SG-A6Z4-01 22 36680174 36680174 C A MYH9 Missense_Mutation p.M1910I 0.15 benign(0.038) TCGA-SG-A6Z4-01 2 118582579 118582579 C T DDX18 Nonsense_Mutation p.R424* 0.12 TCGA-SG-A6Z4-01 2 173349540 173349540 A G ITGA6 Missense_Mutation p.E527G 0.80 deleterious(0.01) benign(0.197) TCGA-SG-A6Z4-01 2 241420424 241420424 G A ANKMY1 Silent p.C903C 0.23 TCGA-SG-A6Z4-01 2 46605046 46605046 C T EPAS1 Silent p.F421F 0.35 TCGA-SG-A6Z4-01 2 73316336 73316336 A G RAB11FIP5 Missense_Mutation p.L180P 0.14 deleterious(0) probably_damaging(0.999) TCGA-SG-A6Z4-01 2 77746658 77746658 C T LRRTM4 Missense_Mutation p.E113K 0.81 deleterious(0) probably_damaging(0.998) TCGA-SG-A6Z4-01 3 167621200 167621200 A G RP11-298O21.5 RNA 0.84 TCGA-SG-A6Z4-01 3 185361867 185361867 G A IGF2BP2 3'UTR 0.08 TCGA-SG-A6Z4-01 3 38798178 38798178 C T SCN10A Missense_Mutation p.R426Q 0.32 tolerated(0.2) benign(0.009) TCGA-SG-A6Z4-01 4 46390798 46390798 G A GABRA2 Intron 0.24 TCGA-SG-A6Z4-01 4 780182 780182 G T CPLX1 3'UTR 0.65 TCGA-SG-A6Z4-01 5 100143305 100143305 C A ST8SIA4 3'UTR 0.41 TCGA-SG-A6Z4-01 5 16067845 16067845 A G MARCH11 Missense_Mutation p.V315A 0.32 deleterious(0.01) possibly_damaging(0.562) TCGA-SG-A6Z4-01 5 32268807 32268807 C G MTMR12 Missense_Mutation p.V195L 0.10 tolerated(0.14) benign(0.021) TCGA-SG-A6Z4-01 5 35965701 35965701 G A UGT3A1 Silent p.F210F 0.61 TCGA-SG-A6Z4-01 5 76932753 76932753 C T OTP Missense_Mutation p.A114T 0.40 deleterious(0.02) possibly_damaging(0.74) TCGA-SG-A6Z4-01 6 102250236 102250236 A G GRIK2 Missense_Mutation p.T376A 0.47 tolerated(0.61) benign(0.007) TCGA-SG-A6Z4-01 6 105614546 105614546 T G POPDC3 Intron 0.12 TCGA-SG-A6Z4-01 6 106696116 106696116 C A ATG5 Missense_Mutation p.R161I 0.40 deleterious(0) benign(0.36) TCGA-SG-A6Z4-01 6 168069993 168069993 G A RP11-351J23.2 RNA 0.23 TCGA-SG-A6Z4-01 6 47202418 47202418 A G TNFRSF21 Missense_Mutation p.F576L 0.18 deleterious(0) benign(0.242) TCGA-SG-A6Z4-01 6 51619707 51619707 C T PKHD1 Missense_Mutation p.R2891H 0.69 tolerated(0.14) benign(0.046) TCGA-SG-A6Z4-01 7 43351444 43351444 A G HECW1 Missense_Mutation p.E37G 0.45 tolerated_low_confidence(0.16) possibly_damaging(0.735) TCGA-SG-A6Z4-01 7 72850199 72850199 G A FZD9 3'UTR 0.26 TCGA-SG-A6Z4-01 8 118147610 118147610 C A SLC30A8 Missense_Mutation p.A15D 0.15 deleterious(0.04) benign(0.021) TCGA-SG-A6Z4-01 8 8234877 8234877 C T SGK223 Missense_Mutation p.G348S 0.05 unknown(0) TCGA-SG-A6Z4-01 X 117583381 117583381 A G WDR44 3'UTR 0.95 TCGA-SG-A6Z4-01 X 140270640 140270640 C T LDOC1 3'UTR 1.00 TCGA-SG-A6Z4-01 X 150349083 150349083 G A GPR50 Missense_Mutation p.R343H 1.00 tolerated(0.05) benign(0.014) TCGA-SG-A6Z4-01 X 18659910 18659910 G C RS1 3'UTR 0.36 TCGA-SG-A6Z4-01 X 79699737 79699737 A G FAM46D 3'UTR 0.86 TCGA-SG-A6Z4-01 X 85404005 85404005 G T DACH2 Missense_Mutation p.Q127H 0.38 deleterious(0) probably_damaging(0.993) TCGA-SG-A6Z7-01 10 127697950 127697950 C G FANK1 Silent p.V327V 0.47 TCGA-SG-A6Z7-01 10 135278308 135278308 G A SPRN Intron 0.07 TCGA-SG-A6Z7-01 11 10772978 10772978 G C CTR9 Missense_Mutation p.E7Q 0.18 deleterious(0.01) possibly_damaging(0.86) TCGA-SG-A6Z7-01 11 15098923 15098923 A T CALCB Missense_Mutation p.S106C 0.82 deleterious(0.05) possibly_damaging(0.779) TCGA-SG-A6Z7-01 11 802809 802809 G A PIDD Silent p.L264L 0.40 TCGA-SG-A6Z7-01 11 803282 803282 G C PIDD Missense_Mutation p.L201V 0.30 tolerated(0.38) probably_damaging(0.999) TCGA-SG-A6Z7-01 11 803302 803302 G T PIDD Missense_Mutation p.S194Y 0.34 tolerated(0.05) benign(0.012) TCGA-SG-A6Z7-01 11 803545 803545 G T PIDD Missense_Mutation p.A113D 0.19 tolerated(0.24) benign(0.055) TCGA-SG-A6Z7-01 12 122628471 122628471 C G MLXIP 3'UTR 0.29 TCGA-SG-A6Z7-01 12 31944230 31944230 A T H3F3C 3'UTR 0.07 TCGA-SG-A6Z7-01 12 40688653 40688653 A G LRRK2 Missense_Mutation p.I939V 0.54 tolerated_low_confidence(0.5) benign(0) TCGA-SG-A6Z7-01 12 54403298 54403298 G T HOXC8 Missense_Mutation p.C77F 0.31 deleterious(0) possibly_damaging(0.905) TCGA-SG-A6Z7-01 12 68595421 68595421 A G IL26 3'UTR 0.06 TCGA-SG-A6Z7-01 12 69158752 69158752 T A SLC35E3 3'UTR 0.02 TCGA-SG-A6Z7-01 12 69784262 69784262 T G YEATS4 3'UTR 0.08 TCGA-SG-A6Z7-01 12 72038834 72038834 C G ZFC3H1 Missense_Mutation p.E368Q 0.21 deleterious(0.01) probably_damaging(0.99) TCGA-SG-A6Z7-01 13 79188593 79188593 C G RNF219 3'UTR 0.20 TCGA-SG-A6Z7-01 13 79190272 79190272 C G RNF219 Missense_Mutation p.D542H 0.33 deleterious(0) probably_damaging(0.999) TCGA-SG-A6Z7-01 14 64465047 64465047 G A SYNE2 Splice_Site p.X1118_splice 0.08 TCGA-SG-A6Z7-01 14 67647600 67647600 C T GPHN Silent p.Y752Y 0.14 TCGA-SG-A6Z7-01 15 80181626 80181626 T C ST20-MTHFS Missense_Mutation p.E39G 0.48 tolerated(0.16) benign(0.01) TCGA-SG-A6Z7-01 16 14340547 14340547 C T MKL2 Missense_Mutation p.S477L 0.50 deleterious(0.04) benign(0.182) TCGA-SG-A6Z7-01 16 57954314 57954314 G T CNGB1 Missense_Mutation p.S593Y 0.40 deleterious(0) probably_damaging(0.984) TCGA-SG-A6Z7-01 16 66597032 66597032 T A CKLF-CMTM1 Intron 0.42 TCGA-SG-A6Z7-01 16 67644737 67644737 T C CTCF Translation_Start_Site p.M1? 0.44 deleterious_low_confidence(0) possibly_damaging(0.599) TCGA-SG-A6Z7-01 17 10533415 10533415 C T MYH3 Silent p.T1852T 0.97 TCGA-SG-A6Z7-01 17 19091345 19091345 G A SNORD3A RNA 0.42 TCGA-SG-A6Z7-01 17 33585788 33585788 C T SLFN5 Nonsense_Mutation p.Q27* 0.08 TCGA-SG-A6Z7-01 17 42327873 42327873 C A SLC4A1 Nonsense_Mutation p.E897* 0.32 TCGA-SG-A6Z7-01 17 8170491 8170491 G A PFAS Missense_Mutation p.R1038Q 0.07 deleterious(0.02) possibly_damaging(0.867) TCGA-SG-A6Z7-01 18 56652849 56652849 C T ZNF532 3'UTR 0.13 TCGA-SG-A6Z7-01 19 17403407 17403407 G A ABHD8 3'UTR 0.18 TCGA-SG-A6Z7-01 19 1853815 1853815 C T KLF16 3'UTR 0.56 TCGA-SG-A6Z7-01 19 1853971 1853971 C G KLF16 3'UTR 0.58 TCGA-SG-A6Z7-01 19 22786189 22786189 C T AC011467.1 3'Flank 0.30 TCGA-SG-A6Z7-01 19 54687531 54687531 C A MBOAT7 Silent p.L122L 0.24 TCGA-SG-A6Z7-01 19 55220578 55220578 T A AC098784.2 3'Flank 0.67 TCGA-SG-A6Z7-01 19 56702218 56702218 G A ZSCAN5B Missense_Mutation p.P243S 0.06 tolerated(0.15) probably_damaging(0.998) TCGA-SG-A6Z7-01 1 111215812 111215812 G A KCNA3 Silent p.S540S 0.45 TCGA-SG-A6Z7-01 1 113238080 113238080 C T MOV10 Missense_Mutation p.P555S 0.46 deleterious(0.04) probably_damaging(0.975) TCGA-SG-A6Z7-01 1 152659563 152659563 C A LCE2B Missense_Mutation p.H82N 0.10 tolerated_low_confidence(0.29) unknown(0) TCGA-SG-A6Z7-01 1 152659592 152659592 C T LCE2B Silent p.C91C 0.13 TCGA-SG-A6Z7-01 1 152800190 152800190 G A LCE1A Missense_Mutation p.R81K 0.12 tolerated_low_confidence(0.67) unknown(0) TCGA-SG-A6Z7-01 1 152816161 152816161 G C LCE6A Missense_Mutation p.R55S 0.08 tolerated(0.49) possibly_damaging(0.563) TCGA-SG-A6Z7-01 1 152883520 152883520 A T IVL Missense_Mutation p.Q416L 0.04 tolerated_low_confidence(0.05) benign(0.042) TCGA-SG-A6Z7-01 1 1850015 1850015 A G TMEM52 Intron 0.10 TCGA-SG-A6Z7-01 1 26754426 26754426 G T LIN28A 3'UTR 0.39 TCGA-SG-A6Z7-01 1 3683994 3683994 G C CCDC27 Missense_Mutation p.E576D 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-SG-A6Z7-01 1 53728180 53728180 T C LRP8 Missense_Mutation p.N571S 0.45 deleterious(0) probably_damaging(0.941) TCGA-SG-A6Z7-01 1 67787498 67787498 C T IL12RB2 Missense_Mutation p.T97I 0.21 deleterious(0.03) probably_damaging(0.996) TCGA-SG-A6Z7-01 1 74549765 74549765 C A LRRIQ3 Intron 0.26 TCGA-SG-A6Z7-01 2 10811749 10811749 C G NOL10 Missense_Mutation p.R132T 0.40 deleterious(0) probably_damaging(0.915) TCGA-SG-A6Z7-01 2 113500399 113500399 T C NT5DC4 3'UTR 0.09 TCGA-SG-A6Z7-01 2 197028089 197028089 C G STK17B Missense_Mutation p.D7H 0.25 deleterious(0.01) possibly_damaging(0.819) TCGA-SG-A6Z7-01 2 197028100 197028100 C T STK17B Missense_Mutation p.R3K 0.25 tolerated_low_confidence(0.07) probably_damaging(0.97) TCGA-SG-A6Z7-01 2 242062177 242062177 C T PASK Nonsense_Mutation p.W1014* 0.56 TCGA-SG-A6Z7-01 2 242062301 242062301 C T PASK Missense_Mutation p.R973K 0.49 tolerated(1) benign(0.001) TCGA-SG-A6Z7-01 2 25456660 25456660 C A DNMT3A 3'UTR 0.24 TCGA-SG-A6Z7-01 3 10049212 10049212 G A AC022007.5 RNA 0.40 TCGA-SG-A6Z7-01 3 156396350 156396350 C T TIPARP Silent p.H288H 0.52 TCGA-SG-A6Z7-01 3 185361830 185361830 G A IGF2BP2 3'UTR 0.05 TCGA-SG-A6Z7-01 3 49070596 49070596 A G QRICH1 Missense_Mutation p.S618P 0.08 deleterious(0) probably_damaging(0.999) TCGA-SG-A6Z7-01 4 183245190 183245190 G A TENM3 Missense_Mutation p.R6H 0.09 tolerated_low_confidence(0.07) possibly_damaging(0.522) TCGA-SG-A6Z7-01 4 187629366 187629366 C T FAT1 Missense_Mutation p.R539H 0.17 probably_damaging(1) TCGA-SG-A6Z7-01 4 20611715 20611715 G A SLIT2 Missense_Mutation p.G1258S 0.44 tolerated(0.11) probably_damaging(1) TCGA-SG-A6Z7-01 4 23833358 23833358 T A PPARGC1A Missense_Mutation p.N84I 0.33 deleterious(0) probably_damaging(0.965) TCGA-SG-A6Z7-01 4 88303510 88303510 C T HSD17B11 Missense_Mutation p.G72E 0.09 deleterious(0) probably_damaging(0.994) TCGA-SG-A6Z7-01 5 156276 156276 A G PLEKHG4B Missense_Mutation p.T411A 0.06 tolerated(0.51) benign(0.346) TCGA-SG-A6Z7-01 5 161326324 161326324 T A GABRA1 3'UTR 0.09 TCGA-SG-A6Z7-01 5 95249513 95249513 C G ELL2 Missense_Mutation p.R148P 0.46 deleterious(0) probably_damaging(0.997) TCGA-SG-A6Z7-01 6 116757666 116757666 G A DSE Missense_Mutation p.D679N 0.09 tolerated(0.12) probably_damaging(0.998) TCGA-SG-A6Z7-01 6 123824870 123824870 G C TRDN Missense_Mutation p.Q263E 0.63 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-SG-A6Z7-01 6 26597314 26597314 C T ABT1 Missense_Mutation p.A35V 0.35 tolerated(0.21) benign(0.084) TCGA-SG-A6Z7-01 7 127010430 127010430 T A ZNF800 3'UTR 0.17 TCGA-SG-A6Z7-01 7 141176854 141176854 T C TMEM178B 3'UTR 0.05 TCGA-SG-A6Z7-01 7 143658017 143658017 A G OR2F1 Nonstop_Mutation p.*318Wext*6 0.34 TCGA-SG-A6Z7-01 7 29959979 29959979 G T SCRN1 3'Flank 0.12 TCGA-SG-A6Z7-01 8 144695028 144695028 G A TSTA3 3'UTR 0.46 TCGA-SG-A6Z7-01 8 48765289 48765289 G C PRKDC Missense_Mutation p.A2316G 0.24 benign(0.041) TCGA-SG-A6Z7-01 8 59750698 59750698 C T TOX Missense_Mutation p.G289D 0.06 deleterious(0) probably_damaging(0.999) TCGA-SG-A6Z7-01 9 136897259 136897259 C G BRD3 3'UTR 0.27 TCGA-SG-A6Z7-01 9 139927527 139927527 G T C9orf139 Silent p.R4R 0.14 TCGA-SG-A6Z7-01 9 35060455 35060455 T C VCP Missense_Mutation p.Y517C 0.39 deleterious(0) probably_damaging(1) TCGA-SG-A6Z7-01 9 5233767 5233767 T A INSL4 Missense_Mutation p.L104M 0.49 tolerated(0.07) probably_damaging(0.934) TCGA-SG-A6Z7-01 X 144905360 144905360 C A SLITRK2 Missense_Mutation p.L473I 0.49 deleterious(0) probably_damaging(0.998) TCGA-SG-A6Z7-01 X 154159234 154159234 T G F8 Missense_Mutation p.K944T 0.08 deleterious(0.02) possibly_damaging(0.493) TCGA-SG-A849-01 10 5567955 5567955 C T CALML3 3'UTR 0.35 TCGA-SG-A849-01 10 64566475 64566475 A G ADO 3'UTR 0.13 TCGA-SG-A849-01 10 91359232 91359232 C A PANK1 Nonsense_Mutation p.E363* 0.09 TCGA-SG-A849-01 10 98386535 98386535 T A PIK3AP1 Silent p.P533P 0.08 TCGA-SG-A849-01 11 49194970 49194970 A C FOLH1 Silent p.P388P 0.11 TCGA-SG-A849-01 11 5172926 5172926 A T OR52A1 Missense_Mutation p.F225Y 0.09 deleterious(0) probably_damaging(0.944) TCGA-SG-A849-01 11 55762040 55762040 A G OR5F1 Missense_Mutation p.L21P 0.12 tolerated(1) benign(0.001) TCGA-SG-A849-01 11 92623796 92623796 T A FAT3 Silent p.G4429G 0.20 TCGA-SG-A849-01 12 112638508 112638508 G A HECTD4 Missense_Mutation p.A2688V 0.13 probably_damaging(0.981) TCGA-SG-A849-01 12 113306340 113306340 C T RPH3A Missense_Mutation p.P184S 0.25 tolerated(0.15) benign(0.014) TCGA-SG-A849-01 12 266277 266277 A G IQSEC3 Missense_Mutation p.E747G 0.06 deleterious(0) probably_damaging(0.982) TCGA-SG-A849-01 12 57548356 57548356 G A LRP1 Missense_Mutation p.V367M 0.07 probably_damaging(0.981) TCGA-SG-A849-01 12 70952974 70952974 A G PTPRB Intron 0.31 TCGA-SG-A849-01 12 71003064 71003064 G C PTPRB Missense_Mutation p.S255C 0.27 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-SG-A849-01 13 20660915 20660915 A G ZMYM2 3'UTR 0.20 TCGA-SG-A849-01 14 103969310 103969310 A T MARK3 Missense_Mutation p.M670L 0.13 tolerated(0.14) benign(0.002) TCGA-SG-A849-01 15 56999299 56999299 G A ZNF280D Silent p.D3D 0.14 TCGA-SG-A849-01 15 75108829 75108829 G A LMAN1L Nonsense_Mutation p.W131* 0.14 TCGA-SG-A849-01 16 2376203 2376203 G A ABCA3 Missense_Mutation p.R43C 0.09 deleterious(0) probably_damaging(1) TCGA-SG-A849-01 16 67986113 67986113 C G SLC12A4 Missense_Mutation p.K299N 0.15 tolerated(0.1) possibly_damaging(0.848) TCGA-SG-A849-01 17 56342328 56342328 C T LPO Silent p.V504V 0.09 TCGA-SG-A849-01 17 8296468 8296468 G T RNF222 Silent p.G104G 0.22 TCGA-SG-A849-01 19 10251834 10251834 T A DNMT1 Missense_Mutation p.D1114V 0.29 deleterious(0.04) possibly_damaging(0.493) TCGA-SG-A849-01 19 18186635 18186635 G A IL12RB1 Silent p.F208F 0.14 TCGA-SG-A849-01 19 53741760 53741760 T C ZNF677 Missense_Mutation p.K74E 0.14 tolerated(0.18) benign(0.005) TCGA-SG-A849-01 19 57335692 57335692 G A PEG3 Missense_Mutation p.P111L 0.10 deleterious(0) probably_damaging(0.967) TCGA-SG-A849-01 1 103342111 103342111 A T COL11A1 3'UTR 0.12 TCGA-SG-A849-01 1 120164920 120164920 G A ZNF697 3'UTR 0.42 TCGA-SG-A849-01 1 15953162 15953162 A G DDI2 Splice_Site p.X47_splice 0.06 TCGA-SG-A849-01 1 169580819 169580819 T C SELP Missense_Mutation p.E353G 0.14 tolerated(0.13) benign(0.011) TCGA-SG-A849-01 1 171121165 171121165 A T FMO6P Missense_Mutation p.D315V 0.20 deleterious(0) probably_damaging(0.998) TCGA-SG-A849-01 1 179604858 179604858 G A TDRD5 Silent p.P452P 0.07 TCGA-SG-A849-01 1 18152586 18152586 C T ACTL8 Missense_Mutation p.R225C 0.21 tolerated(0.13) benign(0.006) TCGA-SG-A849-01 1 2290153 2290153 G A MORN1 Silent p.S249S 0.14 TCGA-SG-A849-01 1 247769075 247769075 T C OR2G3 Missense_Mutation p.L63P 0.12 deleterious(0) probably_damaging(0.986) TCGA-SG-A849-01 1 25894558 25894558 C G LDLRAP1 3'UTR 0.24 TCGA-SG-A849-01 1 67724171 67724171 A G IL23R Missense_Mutation p.E417G 0.19 tolerated(0.12) possibly_damaging(0.859) TCGA-SG-A849-01 20 30371630 30371630 G T TPX2 Missense_Mutation p.R440I 0.12 deleterious(0.02) possibly_damaging(0.677) TCGA-SG-A849-01 20 54824448 54824448 G A MC3R Silent p.S183S 0.19 TCGA-SG-A849-01 20 62320973 62320973 T G RTEL1 Missense_Mutation p.M690R 0.13 deleterious(0) possibly_damaging(0.713) TCGA-SG-A849-01 21 30927609 30927609 C T GRIK1 Missense_Mutation p.D791N 0.23 deleterious(0.01) benign(0.257) TCGA-SG-A849-01 22 19208953 19208953 G C CLTCL1 Missense_Mutation p.H915D 0.10 tolerated(0.07) possibly_damaging(0.797) TCGA-SG-A849-01 22 40362092 40362092 A T GRAP2 Missense_Mutation p.D130V 0.13 deleterious(0) probably_damaging(0.946) TCGA-SG-A849-01 22 50988102 50988102 G A KLHDC7B Missense_Mutation p.G503S 0.22 tolerated(0.13) possibly_damaging(0.517) TCGA-SG-A849-01 2 178095425 178095425 T C NFE2L2 3'UTR 0.17 TCGA-SG-A849-01 2 32728303 32728303 G T BIRC6 Missense_Mutation p.G3167C 0.33 probably_damaging(0.999) TCGA-SG-A849-01 2 71896858 71896858 C A DYSF Silent p.V1922V 0.21 TCGA-SG-A849-01 3 10085514 10085514 C A FANCD2 Missense_Mutation p.A367E 0.03 deleterious(0) probably_damaging(0.974) TCGA-SG-A849-01 3 119462961 119462961 G A MAATS1 Missense_Mutation p.R607Q 0.37 deleterious(0) probably_damaging(0.991) TCGA-SG-A849-01 4 100349015 100349015 A G ADH7 Missense_Mutation p.I180T 0.15 deleterious(0.03) benign(0.054) TCGA-SG-A849-01 4 141548601 141548601 T C TBC1D9 Missense_Mutation p.T965A 0.10 tolerated(0.28) benign(0.051) TCGA-SG-A849-01 4 164245509 164245509 A T NPY1R 3'UTR 0.21 TCGA-SG-A849-01 4 20852198 20852198 C G KCNIP4 Missense_Mutation p.E86Q 0.14 deleterious(0) benign(0.275) TCGA-SG-A849-01 4 76532464 76532464 G A CDKL2 Nonsense_Mutation p.R149* 0.35 TCGA-SG-A849-01 5 118788370 118788370 G A HSD17B4 5'UTR 0.33 TCGA-SG-A849-01 5 145640406 145640406 A G RBM27 Missense_Mutation p.N613S 0.26 deleterious(0.04) benign(0.236) TCGA-SG-A849-01 5 176523681 176523681 C T FGFR4 Silent p.L698L 0.19 TCGA-SG-A849-01 5 177665197 177665197 C T COL23A1 3'UTR 0.19 TCGA-SG-A849-01 6 137245474 137245474 C A SLC35D3 Nonsense_Mutation p.Y297* 0.10 TCGA-SG-A849-01 6 15497191 15497191 G T JARID2 Missense_Mutation p.A579S 0.12 tolerated(0.6) benign(0.03) TCGA-SG-A849-01 6 30114784 30114784 A G TRIM40 Intron 0.18 TCGA-SG-A849-01 6 32147809 32147809 C A RNF5 Silent p.T117T 0.08 TCGA-SG-A849-01 6 39328280 39328280 T G KIF6 Missense_Mutation p.K658T 0.12 deleterious(0) possibly_damaging(0.821) TCGA-SG-A849-01 6 73919587 73919587 C A RP11-257K9.8 3'UTR 0.13 TCGA-SG-A849-01 6 93951348 93951348 A C EPHA7 3'UTR 0.13 TCGA-SG-A849-01 7 102575070 102575070 T C LRRC17 Missense_Mutation p.V237A 0.14 tolerated(0.8) benign(0) TCGA-SG-A849-01 7 103048325 103048325 C G SLC26A5 Silent p.P287P 0.06 TCGA-SG-A849-01 7 117246748 117246748 T A CFTR Missense_Mutation p.S977T 0.11 tolerated(0.32) benign(0.142) TCGA-SG-A849-01 7 43283484 43283484 G A HECW1 5'UTR 0.10 TCGA-SG-A849-01 7 86415654 86415654 G A GRM3 Silent p.S182S 0.11 TCGA-SG-A849-01 8 74234977 74234977 G T RDH10 Missense_Mutation p.K278N 0.16 tolerated(0.61) benign(0.002) TCGA-SG-A849-01 9 119488226 119488226 A T ASTN2 Missense_Mutation p.F826Y 0.29 deleterious(0) unknown(0) TCGA-SG-A849-01 9 126128371 126128371 G A CRB2 Silent p.T198T 0.33 TCGA-SG-A849-01 9 2833369 2833369 C A KIAA0020 Silent p.G168G 0.50 TCGA-SG-A849-01 9 77377882 77377882 C T TRPM6 Silent p.E1235E 0.22 TCGA-SG-A849-01 X 105451846 105451846 T C MUM1L1 3'UTR 0.36 TCGA-SG-A849-01 X 114424991 114424991 C T RBMXL3 Silent p.Y329Y 0.23 TCGA-SG-A849-01 X 138612959 138612959 A G F9 Silent p.P12P 0.39 TCGA-SG-A849-01 X 1419414 1419414 T C CSF2RA Missense_Mutation p.Y281H 0.10 tolerated(0.07) possibly_damaging(0.614) TCGA-SG-A849-01 X 155119268 155119268 C A VAMP7 Missense_Mutation p.H47N 0.21 tolerated(0.13) benign(0.244) TCGA-SG-A849-01 X 24197842 24197842 C A ZFX Missense_Mutation p.Q201K 0.21 tolerated(0.42) benign(0.096) TCGA-SI-A71O-01 10 1230965 1230965 C T ADARB2 Missense_Mutation p.E627K 0.84 deleterious(0) possibly_damaging(0.46) TCGA-SI-A71O-01 11 123893856 123893856 T C OR10G9 Missense_Mutation p.V46A 0.59 tolerated(0.85) benign(0.029) TCGA-SI-A71O-01 11 27390228 27390228 A G LGR4 Missense_Mutation p.L681P 0.11 deleterious(0) probably_damaging(0.992) TCGA-SI-A71O-01 11 30034231 30034231 T C KCNA4 5'UTR 0.97 TCGA-SI-A71O-01 11 64627706 64627706 T C EHD1 Missense_Mutation p.E202G 0.33 deleterious(0.04) benign(0.008) TCGA-SI-A71O-01 11 70505972 70505972 C T SHANK2 Silent p.A675A 0.92 TCGA-SI-A71O-01 11 72396527 72396527 C T ARAP1 3'UTR 1.00 TCGA-SI-A71O-01 11 94113534 94113534 G C GPR83 Missense_Mutation p.N351K 0.89 deleterious(0.02) benign(0.097) TCGA-SI-A71O-01 12 106763087 106763089 GAA - POLR3B In_Frame_Del p.E89del 0.59 TCGA-SI-A71O-01 12 121698198 121698198 G T CAMKK2 Intron 0.16 TCGA-SI-A71O-01 12 133398646 133398647 GA - GOLGA3 Frame_Shift_Del p.L23Pfs*15 0.18 TCGA-SI-A71O-01 12 39740286 39740286 C A KIF21A Missense_Mutation p.S565I 0.22 tolerated(0.19) benign(0) TCGA-SI-A71O-01 12 52284807 52284807 G A ANKRD33 Silent p.P359P 0.19 TCGA-SI-A71O-01 13 23911370 23911370 G C SACS Missense_Mutation p.F2215L 0.46 probably_damaging(0.977) TCGA-SI-A71O-01 13 23912078 23912078 G C SACS Missense_Mutation p.F1979L 0.24 probably_damaging(0.977) TCGA-SI-A71O-01 14 59113290 59113290 G A DACT1 Missense_Mutation p.G650D 0.12 tolerated(0.5) possibly_damaging(0.853) TCGA-SI-A71O-01 14 89212617 89212617 G A EML5 Missense_Mutation p.S123L 0.36 deleterious(0) benign(0.299) TCGA-SI-A71O-01 14 89628792 89628792 C T FOXN3 Missense_Mutation p.G480E 0.21 tolerated(0.07) probably_damaging(1) TCGA-SI-A71O-01 16 71950976 71950976 C T IST1 Missense_Mutation p.S112F 0.06 deleterious(0) probably_damaging(0.97) TCGA-SI-A71O-01 16 72003878 72003878 C T PKD1L3 RNA 0.31 TCGA-SI-A71O-01 17 59533927 59533927 G A TBX4 Missense_Mutation p.A26T 0.42 tolerated(0.31) benign(0.005) TCGA-SI-A71O-01 17 61619796 61619796 G A KCNH6 Splice_Site p.X716_splice 0.26 TCGA-SI-A71O-01 19 18085001 18085001 A T KCNN1 Nonsense_Mutation p.K102* 0.11 TCGA-SI-A71O-01 19 35232821 35232821 C A ZNF181 Missense_Mutation p.T512N 0.17 deleterious(0.01) probably_damaging(0.951) TCGA-SI-A71O-01 19 35524582 35524582 C T SCN1B Silent p.F129F 0.07 TCGA-SI-A71O-01 19 38886200 38886200 C A SPRED3 Silent p.G216G 0.55 TCGA-SI-A71O-01 19 52393848 52393848 A C ZNF649 3'UTR 0.58 TCGA-SI-A71O-01 1 153234265 153234265 C T LOR Silent p.G280G 0.46 TCGA-SI-A71O-01 1 221507182 221507182 G A RP11-421L10.1 RNA 0.11 TCGA-SI-A71O-01 1 57476849 57476849 T C DAB1 Missense_Mutation p.E514G 0.17 tolerated(1) benign(0.003) TCGA-SI-A71O-01 1 78245330 78245330 C T FAM73A 5'UTR 0.24 TCGA-SI-A71O-01 21 32491442 32491442 T A TIAM1 3'UTR 0.08 TCGA-SI-A71O-01 2 179615352 179615352 T A TTN Intron 0.20 TCGA-SI-A71O-01 2 20518400 20518400 G A PUM2 Missense_Mutation p.P20S 0.13 tolerated_low_confidence(0.08) possibly_damaging(0.702) TCGA-SI-A71O-01 2 228855785 228855785 C G SPHKAP Missense_Mutation p.W1630C 0.64 deleterious(0) probably_damaging(1) TCGA-SI-A71O-01 2 228855876 228855876 C T SPHKAP Missense_Mutation p.G1600E 0.62 tolerated(0.15) benign(0.232) TCGA-SI-A71O-01 2 228855888 228855888 C T SPHKAP Missense_Mutation p.G1596E 0.62 tolerated(0.14) benign(0.344) TCGA-SI-A71O-01 2 228855889 228855889 C T SPHKAP Missense_Mutation p.G1596R 0.62 deleterious(0.04) benign(0.33) TCGA-SI-A71O-01 2 228856032 228856032 C T SPHKAP Missense_Mutation p.E1578K 0.62 deleterious(0.01) probably_damaging(0.911) TCGA-SI-A71O-01 2 99182628 99182628 G A INPP4A Missense_Mutation p.E811K 0.34 deleterious(0) probably_damaging(0.963) TCGA-SI-A71O-01 3 122642544 122642544 C T SEMA5B Missense_Mutation p.A452T 0.19 tolerated(0.1) benign(0.182) TCGA-SI-A71O-01 4 40818138 40818138 G A APBB2 Nonsense_Mutation p.Q751* 0.42 TCGA-SI-A71O-01 5 140167900 140167900 G A PCDHA1 Silent p.A675A 0.45 TCGA-SI-A71O-01 5 140891960 140891960 C A PCDHGB6 3'UTR 0.38 TCGA-SI-A71O-01 6 33540387 33540387 T A BAK1 3'UTR 0.50 TCGA-SI-A71O-01 7 112460528 112460529 - A C7orf60 3'UTR 0.09 TCGA-SI-A71O-01 7 23221476 23221476 G C NUPL2 5'UTR 0.50 TCGA-SI-A71O-01 8 24810224 24810224 A T CTD-2168K21.2 5'Flank 0.86 TCGA-SI-A71O-01 8 48801762 48801763 - A PRKDC Frame_Shift_Ins p.N1364* 0.37 TCGA-SI-A71O-01 8 53477741 53477741 G T FAM150A Missense_Mutation p.H26N 0.18 tolerated(0.12) unknown(0) TCGA-SI-A71O-01 8 72123391 72123392 - T EYA1 Frame_Shift_Ins p.H567Afs*65 0.24 TCGA-SI-A71O-01 9 93375876 93375876 T C DIRAS2 Silent p.K78K 0.42 TCGA-SI-A71O-01 X 11187750 11187750 G C ARHGAP6 Missense_Mutation p.L562V 0.86 deleterious(0.04) probably_damaging(0.928) TCGA-SI-A71O-01 X 47775688 47775688 A C ZNF81 Missense_Mutation p.H548P 0.90 deleterious(0) probably_damaging(0.999) TCGA-SI-A71P-01 10 5788196 5788196 T C FAM208B Missense_Mutation p.S938P 0.14 tolerated(0.08) benign(0.133) TCGA-SI-A71P-01 11 62782355 62782355 G A SLC22A8 Missense_Mutation p.L26F 0.15 tolerated(0.15) benign(0.006) TCGA-SI-A71P-01 14 106311760 106311760 G A IGHD Silent p.C84C 0.14 TCGA-SI-A71P-01 14 69521851 69521851 G C DCAF5 Missense_Mutation p.R518G 0.10 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-SI-A71P-01 15 33954925 33954925 C T RYR3 Silent p.L1732L 0.28 TCGA-SI-A71P-01 15 75684814 75684814 G C SIN3A Missense_Mutation p.Q874E 0.26 tolerated(1) benign(0.041) TCGA-SI-A71P-01 16 79634311 79634311 G C MAF 5'UTR 0.21 TCGA-SI-A71P-01 16 89348191 89348191 G A ANKRD11 Silent p.L1587L 0.31 TCGA-SI-A71P-01 17 16049780 16049780 C T NCOR1 Missense_Mutation p.R331K 0.12 probably_damaging(0.983) TCGA-SI-A71P-01 17 18857121 18857121 G C SLC5A10 Intron 0.15 TCGA-SI-A71P-01 17 27614111 27614111 G A NUFIP2 Missense_Mutation p.R301W 0.06 deleterious(0) probably_damaging(0.987) TCGA-SI-A71P-01 17 29541587 29541588 - A NF1 Frame_Shift_Ins p.L506Afs*5 0.17 TCGA-SI-A71P-01 17 37331119 37331119 C T CACNB1 3'UTR 0.06 TCGA-SI-A71P-01 18 47810148 47810148 A T CXXC1 Missense_Mutation p.I488N 0.16 deleterious(0) probably_damaging(0.991) TCGA-SI-A71P-01 18 72346148 72346148 G A ZNF407 Missense_Mutation p.R1058H 0.36 tolerated(0.08) benign(0.019) TCGA-SI-A71P-01 19 3624126 3624126 C T CACTIN Missense_Mutation p.G68R 0.08 tolerated_low_confidence(0.44) unknown(0) TCGA-SI-A71P-01 19 54313886 54313886 G A NLRP12 Missense_Mutation p.R343W 0.24 deleterious(0) probably_damaging(1) TCGA-SI-A71P-01 1 150940932 150940932 C T CERS2 Missense_Mutation p.R77Q 0.13 tolerated(0.18) benign(0.342) TCGA-SI-A71P-01 1 153782004 153782004 C T GATAD2B 3'UTR 0.07 TCGA-SI-A71P-01 1 26440780 26440780 C G PDIK1L Intron 0.18 TCGA-SI-A71P-01 1 63018452 63018452 C T DOCK7 Missense_Mutation p.G906E 0.15 tolerated(0.11) benign(0.358) TCGA-SI-A71P-01 20 18296306 18296306 G A ZNF133 Missense_Mutation p.V270M 0.25 tolerated(0.06) probably_damaging(0.951) TCGA-SI-A71P-01 21 11020870 11020870 T G BAGE2 RNA 0.06 TCGA-SI-A71P-01 21 46276197 46276197 G A PTTG1IP Silent p.C120C 0.11 TCGA-SI-A71P-01 22 25961089 25961089 G A ADRBK2 Missense_Mutation p.A28T 0.19 tolerated(0.14) benign(0.054) TCGA-SI-A71P-01 22 29709237 29709237 C A RASL10A 3'UTR 0.17 TCGA-SI-A71P-01 22 36688042 36688042 T G MYH9 Missense_Mutation p.K1445T 0.32 probably_damaging(0.996) TCGA-SI-A71P-01 2 100915748 100915748 G A LONRF2 Missense_Mutation p.T434I 0.17 tolerated(0.41) benign(0.001) TCGA-SI-A71P-01 2 179613592 179613592 T C TTN Intron 0.06 TCGA-SI-A71P-01 2 216197214 216197214 A G ATIC Silent p.K266K 0.09 TCGA-SI-A71P-01 2 26624902 26624902 C G DRC1 Missense_Mutation p.D15E 0.08 tolerated_low_confidence(1) benign(0.007) TCGA-SI-A71P-01 2 29295870 29295870 C A C2orf71 Missense_Mutation p.A420S 0.24 tolerated(0.25) possibly_damaging(0.548) TCGA-SI-A71P-01 2 73486154 73486154 C T FBXO41 Missense_Mutation p.G862S 0.13 deleterious(0.04) possibly_damaging(0.555) TCGA-SI-A71P-01 3 53274298 53274298 C G TKT Missense_Mutation p.A136P 0.20 deleterious(0) probably_damaging(1) TCGA-SI-A71P-01 3 66429693 66429693 G A LRIG1 3'UTR 0.11 TCGA-SI-A71P-01 3 97487021 97487021 G A ARL6 Missense_Mutation p.G24R 0.11 deleterious(0) probably_damaging(1) TCGA-SI-A71P-01 4 129795439 129795439 G A JADE1 3'UTR 0.05 TCGA-SI-A71P-01 4 184202086 184202086 A G WWC2 Intron 0.31 TCGA-SI-A71P-01 4 44449651 44449651 C T KCTD8 Missense_Mutation p.G297D 0.05 tolerated(0.05) probably_damaging(0.998) TCGA-SI-A71P-01 5 172195870 172195870 G A DUSP1 Silent p.T333T 0.14 TCGA-SI-A71P-01 6 163984490 163984490 G C QKI Missense_Mutation p.A225P 0.22 tolerated(0.2) possibly_damaging(0.878) TCGA-SI-A71P-01 6 28540383 28540383 C A SCAND3 Missense_Mutation p.D1095Y 0.13 deleterious(0) possibly_damaging(0.641) TCGA-SI-A71P-01 7 1026747 1026747 A G CYP2W1 Missense_Mutation p.D275G 0.33 tolerated(0.46) benign(0.008) TCGA-SI-A71P-01 7 115750938 115750938 G A TFEC Missense_Mutation p.L8F 0.09 deleterious_low_confidence(0.02) possibly_damaging(0.763) TCGA-SI-A71P-01 7 16505455 16505455 A G SOSTDC1 5'UTR 0.20 TCGA-SI-A71P-01 8 102681815 102681816 - T GRHL2 3'UTR 0.08 TCGA-SI-A71P-01 8 53084453 53084453 G A ST18 Missense_Mutation p.T323I 0.10 deleterious(0.05) benign(0.342) TCGA-SI-A71P-01 9 130913979 130913979 C T LCN2 Missense_Mutation p.T113M 0.17 deleterious(0) possibly_damaging(0.905) TCGA-SI-A71Q-01 10 101595898 101595898 C T ABCC2 Silent p.T1155T 0.59 TCGA-SI-A71Q-01 10 89725922 89725922 G A PTEN 3'UTR 0.11 TCGA-SI-A71Q-01 11 116729350 116729350 G A SIK3 Missense_Mutation p.S838L 0.39 deleterious_low_confidence(0.04) benign(0.002) TCGA-SI-A71Q-01 11 13441262 13441262 G - BTBD10 Frame_Shift_Del p.P110Qfs*54 0.53 TCGA-SI-A71Q-01 11 194424 194424 G A SCGB1C1 Missense_Mutation p.V88M 0.13 tolerated(0.07) probably_damaging(0.934) TCGA-SI-A71Q-01 13 46717443 46717443 C T LCP1 Silent p.L450L 0.26 TCGA-SI-A71Q-01 14 51243731 51243731 T A NIN Missense_Mutation p.H201L 0.35 deleterious(0.05) probably_damaging(0.995) TCGA-SI-A71Q-01 15 102515340 102515340 G A WASH3P 3'Flank 0.40 TCGA-SI-A71Q-01 15 102516362 102516362 G A WASH3P 3'Flank 0.10 TCGA-SI-A71Q-01 15 24928209 24928209 G A NPAP1 3'UTR 0.28 TCGA-SI-A71Q-01 15 41961309 41961309 G C MGA Missense_Mutation p.G73R 0.27 tolerated(0.14) probably_damaging(0.932) TCGA-SI-A71Q-01 16 84063139 84063139 G A SLC38A8 Missense_Mutation p.S217F 0.39 deleterious(0.01) benign(0.25) TCGA-SI-A71Q-01 17 10301883 10301883 T C MYH8 Silent p.E1352E 0.06 TCGA-SI-A71Q-01 17 38324174 38324174 C T CASC3 Nonsense_Mutation p.Q575* 0.55 TCGA-SI-A71Q-01 19 10463610 10463610 G A TYK2 Silent p.P1064P 0.52 TCGA-SI-A71Q-01 19 10610197 10610197 G A KEAP1 Silent p.C171C 0.10 TCGA-SI-A71Q-01 19 16279082 16279082 C T CIB3 Missense_Mutation p.R71H 0.06 deleterious(0.02) possibly_damaging(0.891) TCGA-SI-A71Q-01 19 42224076 42224076 C T CEACAM5 Nonsense_Mutation p.Q574* 0.32 TCGA-SI-A71Q-01 19 4891074 4891074 G C ARRDC5 Missense_Mutation p.P338R 0.37 tolerated_low_confidence(0.3) benign(0.055) TCGA-SI-A71Q-01 19 4891142 4891142 G T ARRDC5 Silent p.I315I 0.28 TCGA-SI-A71Q-01 19 49910870 49910870 G A CCDC155 Missense_Mutation p.R312H 0.31 deleterious(0.02) benign(0.109) TCGA-SI-A71Q-01 1 152944983 152944983 T A SPRR4 3'UTR 0.48 TCGA-SI-A71Q-01 1 16384813 16384813 G C FAM131C 3'UTR 0.33 TCGA-SI-A71Q-01 1 27106528 27106528 G A ARID1A Missense_Mutation p.E2047K 0.40 possibly_damaging(0.635) TCGA-SI-A71Q-01 20 1552366 1552366 C T SIRPB1 Missense_Mutation p.V251I 0.05 deleterious(0) possibly_damaging(0.888) TCGA-SI-A71Q-01 2 120704097 120704097 G A PTPN4 Missense_Mutation p.G535R 0.21 deleterious(0) probably_damaging(1) TCGA-SI-A71Q-01 2 197707533 197707533 T G PGAP1 Missense_Mutation p.N848H 0.26 deleterious(0.04) benign(0.003) TCGA-SI-A71Q-01 2 207173469 207173469 G T ZDBF2 Missense_Mutation p.G1406V 0.24 tolerated(0.32) probably_damaging(0.953) TCGA-SI-A71Q-01 2 231911630 231911630 T A C2orf72 Missense_Mutation p.L261Q 0.25 deleterious(0) probably_damaging(0.998) TCGA-SI-A71Q-01 2 31168687 31168687 G A GALNT14 Missense_Mutation p.T240I 0.33 deleterious(0) probably_damaging(0.915) TCGA-SI-A71Q-01 2 98914470 98914470 C T VWA3B Silent p.G1086G 0.54 TCGA-SI-A71Q-01 5 129072798 129072798 G T ADAMTS19 Missense_Mutation p.V1171L 0.77 deleterious(0.01) probably_damaging(0.999) TCGA-SI-A71Q-01 5 140711128 140711128 C T PCDHGA1 Missense_Mutation p.R293C 0.13 tolerated_low_confidence(0.14) possibly_damaging(0.806) TCGA-SI-A71Q-01 5 840192 840192 C T ZDHHC11 Intron 0.44 TCGA-SI-A71Q-01 6 105219148 105219148 C G HACE1 Missense_Mutation p.E711Q 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-SI-A71Q-01 6 29395185 29395185 T A OR11A1 Silent p.A78A 0.41 TCGA-SI-A71Q-01 6 47573998 47573998 C T CD2AP Silent p.F505F 0.21 TCGA-SI-A71Q-01 6 74063926 74063926 C G DPPA5 Missense_Mutation p.R8T 0.42 tolerated(0.19) benign(0.032) TCGA-SI-A71Q-01 7 137080395 137080395 C A DGKI Silent p.V1010V 0.27 TCGA-SI-A71Q-01 7 5161321 5161321 G C ZNF890P RNA 0.20 TCGA-SI-A71Q-01 8 38274849 38274849 G T FGFR1 Missense_Mutation p.N577K 0.21 deleterious(0) probably_damaging(1) TCGA-SI-A71Q-01 8 41788246 41788246 A T KAT6A 3'UTR 0.17 TCGA-SI-A71Q-01 9 122049 122049 G A CBWD1 Silent p.V331V 0.65 TCGA-SI-A71Q-01 X 101572216 101572216 G T NXF2 Intron 0.10 TCGA-SI-A71Q-01 X 105153297 105153297 C T NRK Missense_Mutation p.A556V 0.48 tolerated(0.31) benign(0.001) TCGA-SI-A71Q-01 X 135487944 135487944 T C GPR112 Silent p.V2916V 0.29 TCGA-SI-A71Q-01 X 56292123 56292123 C A KLF8 Missense_Mutation p.P198T 0.30 tolerated(0.44) probably_damaging(0.998) TCGA-SI-A71Q-01 X 63563503 63563503 A C MTMR8 Missense_Mutation p.I321M 0.20 deleterious(0.04) benign(0.396) TCGA-SI-AA8B-01 10 135094822 135094822 T C TUBGCP2 Missense_Mutation p.Y871C 0.28 deleterious(0.05) possibly_damaging(0.819) TCGA-SI-AA8B-01 10 72619225 72619225 T C SGPL1 Missense_Mutation p.L195P 0.41 deleterious(0) probably_damaging(0.998) TCGA-SI-AA8B-01 11 18195645 18195645 G A MRGPRX4 Missense_Mutation p.R281H 0.61 tolerated(0.06) benign(0.014) TCGA-SI-AA8B-01 11 22833947 22833947 C T GAS2 3'UTR 0.81 TCGA-SI-AA8B-01 11 4566606 4566606 C G OR52M1 Nonsense_Mutation p.Y62* 0.17 TCGA-SI-AA8B-01 11 56113552 56113552 C - OR8K1 Frame_Shift_Del p.K14Rfs*2 0.09 TCGA-SI-AA8B-01 11 64533007 64533007 G A SF1 Intron 0.05 TCGA-SI-AA8B-01 11 6519436 6519436 C T DNHD1 5'UTR 0.50 TCGA-SI-AA8B-01 12 123812034 123812034 T C SBNO1 Missense_Mutation p.K544R 0.26 tolerated(0.94) probably_damaging(0.914) TCGA-SI-AA8B-01 12 129190234 129190234 G C TMEM132C Silent p.G907G 0.21 TCGA-SI-AA8B-01 12 26218075 26218075 A T RASSF8 Nonsense_Mutation p.K250* 0.26 TCGA-SI-AA8B-01 12 72425429 72425429 C T TPH2 Missense_Mutation p.T476I 0.15 tolerated(1) possibly_damaging(0.887) TCGA-SI-AA8B-01 12 81471851 81471851 C T ACSS3 5'UTR 0.20 TCGA-SI-AA8B-01 13 113765058 113765058 A G F7 Missense_Mutation p.N62S 0.09 deleterious(0.02) possibly_damaging(0.849) TCGA-SI-AA8B-01 13 30829681 30829681 G A KATNAL1 Missense_Mutation p.A132V 0.53 tolerated(0.2) benign(0.003) TCGA-SI-AA8B-01 14 51452697 51452697 G C TRIM9 Intron 0.23 TCGA-SI-AA8B-01 14 80327832 80327832 C A NRXN3 Intron 0.48 TCGA-SI-AA8B-01 15 26790946 26790946 C A GABRB3 3'UTR 0.65 TCGA-SI-AA8B-01 15 40630782 40630782 C T C15orf52 Missense_Mutation p.R200Q 0.31 tolerated(0.39) benign(0.024) TCGA-SI-AA8B-01 15 43027338 43027338 A - CDAN1 Frame_Shift_Del p.C366Vfs*24 0.33 TCGA-SI-AA8B-01 15 48702700 48702713 GTAATTTGGTTTCT AATTTCA FBN1 3'UTR 0.37 TCGA-SI-AA8B-01 16 2552660 2552660 C G TBC1D24 3'UTR 0.14 TCGA-SI-AA8B-01 16 3299631 3299631 G A MEFV Missense_Mutation p.R354W 0.29 deleterious(0.01) benign(0.02) TCGA-SI-AA8B-01 17 21318772 21318772 C T KCNJ12 Missense_Mutation p.R40C 0.13 deleterious(0) probably_damaging(0.93) TCGA-SI-AA8B-01 17 27822611 27822611 G A TAOK1 Missense_Mutation p.V289M 0.23 deleterious(0) possibly_damaging(0.868) TCGA-SI-AA8B-01 17 46507467 46507467 G A SKAP1 Missense_Mutation p.L6F 0.17 deleterious(0.01) benign(0.113) TCGA-SI-AA8B-01 19 13410062 13410062 G A CACNA1A Silent p.N795N 0.43 TCGA-SI-AA8B-01 19 19760426 19760427 AT - ATP13A1 Frame_Shift_Del p.M861Vfs*15 0.09 TCGA-SI-AA8B-01 19 30935562 30935562 C A ZNF536 Missense_Mutation p.R365S 0.20 deleterious(0) probably_damaging(0.999) TCGA-SI-AA8B-01 19 47775130 47775130 G T CCDC9 3'UTR 0.25 TCGA-SI-AA8B-01 19 50923209 50923209 C A SPIB Missense_Mutation p.D10E 0.35 tolerated(0.64) benign(0.004) TCGA-SI-AA8B-01 19 7619936 7619936 T A PNPLA6 Missense_Mutation p.F941Y 0.19 deleterious(0) probably_damaging(0.98) TCGA-SI-AA8B-01 1 200880698 200880698 G A C1orf106 Silent p.P359P 0.32 TCGA-SI-AA8B-01 1 248569970 248569970 C A OR2T1 Missense_Mutation p.N225K 0.88 deleterious(0.01) possibly_damaging(0.85) TCGA-SI-AA8B-01 1 38185704 38185704 G A EPHA10 Silent p.A813A 0.06 TCGA-SI-AA8B-01 1 67279771 67279771 C A WDR78 3'UTR 0.19 TCGA-SI-AA8B-01 1 9664892 9664892 T C TMEM201 Intron 0.54 TCGA-SI-AA8B-01 20 1115769 1115769 A G PSMF1 Missense_Mutation p.Y124C 0.61 deleterious(0) probably_damaging(0.996) TCGA-SI-AA8B-01 20 25755837 25755837 G A FAM182B Missense_Mutation p.P40L 0.16 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-SI-AA8B-01 20 30522516 30522516 C T TTLL9 Missense_Mutation p.R277C 0.42 tolerated(0.09) benign(0.015) TCGA-SI-AA8B-01 21 39947669 39947669 C T ERG Intron 0.93 TCGA-SI-AA8B-01 2 234055015 234055015 C G INPP5D Silent p.V267V 0.74 TCGA-SI-AA8B-01 3 125877353 125877353 C A ALDH1L1 Missense_Mutation p.C96F 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-SI-AA8B-01 3 15253704 15253704 G A CAPN7 Missense_Mutation p.A66T 0.41 tolerated(0.56) benign(0.01) TCGA-SI-AA8B-01 3 52438591 52438591 G A BAP1 Silent p.D376D 0.24 TCGA-SI-AA8B-01 3 55107538 55107538 C G CACNA2D3 Silent p.L1018L 0.45 TCGA-SI-AA8B-01 4 119978906 119978906 C G SYNPO2 Silent p.V1201V 0.14 TCGA-SI-AA8B-01 4 183723205 183723205 G A TENM3 3'UTR 0.54 TCGA-SI-AA8B-01 4 1918632 1918632 G A WHSC1 Silent p.Q265Q 0.54 TCGA-SI-AA8B-01 4 48380035 48380035 C T SLAIN2 Nonsense_Mutation p.R221* 0.09 TCGA-SI-AA8B-01 6 147885911 147885911 T C SAMD5 3'UTR 0.45 TCGA-SI-AA8B-01 6 28540109 28540109 A T SCAND3 Nonsense_Mutation p.L1186* 0.31 TCGA-SI-AA8B-01 6 44201321 44201321 C T SLC29A1 3'UTR 0.47 TCGA-SI-AA8B-01 6 53986311 53986311 C A MLIP Missense_Mutation p.P44T 0.16 deleterious(0) probably_damaging(0.998) TCGA-SI-AA8B-01 6 86215589 86215589 A G SNX14 3'UTR 0.18 TCGA-SI-AA8B-01 7 126173478 126173478 A T GRM8 Missense_Mutation p.V653D 0.34 deleterious(0) possibly_damaging(0.481) TCGA-SI-AA8B-01 7 13971306 13971306 C A ETV1 Missense_Mutation p.R208L 0.18 tolerated(0.18) possibly_damaging(0.844) TCGA-SI-AA8B-01 8 22138936 22138936 G A PIWIL2 Silent p.K111K 0.19 TCGA-SI-AA8B-01 8 42608195 42608195 C A CHRNA6 3'UTR 0.15 TCGA-SI-AA8B-01 8 54163589 54163589 G A OPRK1 Silent p.S3S 0.50 TCGA-SI-AA8B-01 9 136384035 136384035 G A TMEM8C Silent p.G120G 0.32 TCGA-SI-AA8B-01 9 15744289 15744290 - A CCDC171 Frame_Shift_Ins p.N692Kfs*9 0.13 TCGA-SI-AA8B-01 X 107400122 107400122 C A COL4A6 3'UTR 0.08 TCGA-SI-AA8B-01 X 112022791 112022791 G A AMOT Missense_Mutation p.T864I 0.11 unknown(0) TCGA-SI-AA8B-01 X 139586763 139586763 G A SOX3 Missense_Mutation p.R155C 0.15 deleterious(0) probably_damaging(0.996) TCGA-SI-AA8B-01 X 153247760 153247760 C T TMEM187 Missense_Mutation p.R83C 0.07 tolerated(0.07) benign(0.026) TCGA-SI-AA8B-01 X 154124375 154124375 C T F8 Missense_Mutation p.G2136R 0.16 deleterious(0) probably_damaging(1) TCGA-SI-AA8B-01 X 49045593 49045593 T A SYP 3'UTR 0.82 TCGA-SI-AA8B-01 X 70323379 70323379 A G FOXO4 3'UTR 0.25 TCGA-SI-AA8B-01 X 70598812 70598812 C T TAF1 Missense_Mutation p.R451C 0.32 deleterious(0) possibly_damaging(0.828) TCGA-SI-AA8B-01 X 76938686 76938686 T A ATRX Nonsense_Mutation p.K688* 0.47 TCGA-SI-AA8B-01 X 84614563 84614563 G C POF1B Missense_Mutation p.P144A 0.49 deleterious_low_confidence(0.04) benign(0.088) TCGA-SI-AA8C-01 10 49414887 49414887 G T FRMPD2 Silent p.I567I 0.21 TCGA-SI-AA8C-01 13 97485014 97485014 T A HS6ST3 Silent p.T326T 0.12 TCGA-SI-AA8C-01 14 100595978 100595978 G A EVL Missense_Mutation p.G266R 0.20 deleterious(0) probably_damaging(0.948) TCGA-SI-AA8C-01 15 59388064 59388064 C T RNF111 3'UTR 0.20 TCGA-SI-AA8C-01 15 63946430 63946430 C T HERC1 Missense_Mutation p.R3393H 0.10 possibly_damaging(0.667) TCGA-SI-AA8C-01 17 30322708 30322732 TCCGTCCACAAGAAATGGAAGTAGA - SUZ12 Frame_Shift_Del p.R575Vfs*10 0.81 TCGA-SI-AA8C-01 1 15430617 15430617 C T KAZN Silent p.I660I 0.76 TCGA-SI-AA8C-01 1 174652688 174652688 G C RABGAP1L Missense_Mutation p.G618A 0.08 deleterious(0) probably_damaging(0.998) TCGA-SI-AA8C-01 22 25777416 25777416 C - LRP5L 5'UTR 0.17 TCGA-SI-AA8C-01 22 25777529 25777529 C T LRP5L 5'UTR 0.20 TCGA-SI-AA8C-01 22 41751983 41751983 G A ZC3H7B Missense_Mutation p.R767H 0.14 deleterious(0) probably_damaging(0.961) TCGA-SI-AA8C-01 2 233632182 233632182 T C KCNJ13 3'UTR 0.26 TCGA-SI-AA8C-01 3 9771323 9771323 C T CPNE9 Missense_Mutation p.R537W 0.52 deleterious(0.04) unknown(0) TCGA-SI-AA8C-01 4 53492298 53492298 T C USP46 Missense_Mutation p.K150E 0.42 tolerated(0.66) benign(0.015) TCGA-SI-AA8C-01 5 140555603 140555603 C T PCDHB7 3'UTR 0.08 TCGA-SI-AA8C-01 6 52269183 52269183 A G PAQR8 3'UTR 0.08 TCGA-SI-AA8C-01 6 62757794 62757794 C G KHDRBS2 Missense_Mutation p.D109H 0.29 deleterious(0) probably_damaging(1) TCGA-SI-AA8C-01 7 106842009 106842009 G C COG5 3'Flank 0.11 TCGA-SI-AA8C-01 7 106842014 106842014 G A COG5 3'Flank 0.11 TCGA-SI-AA8C-01 7 154752762 154752762 C T PAXIP1 Missense_Mutation p.A759T 0.32 deleterious(0) unknown(0) TCGA-SI-AA8C-01 8 110457290 110457290 T A PKHD1L1 Missense_Mutation p.V1731E 0.10 deleterious(0.02) possibly_damaging(0.79) TCGA-SI-AA8C-01 8 1497797 1497797 C T DLGAP2 Missense_Mutation p.P313L 0.13 deleterious(0.04) possibly_damaging(0.631) TCGA-SI-AA8C-01 X 150789982 150789982 A G PASD1 Silent p.L112L 0.38 TCGA-UE-A6QT-01 11 45882531 45882531 G C CRY2 Missense_Mutation p.E221D 0.38 tolerated(0.17) benign(0) TCGA-UE-A6QT-01 11 688025 688025 C T DEAF1 Missense_Mutation p.G184S 0.20 tolerated(0.33) possibly_damaging(0.856) TCGA-UE-A6QT-01 12 57441190 57441190 C T MYO1A Silent p.E109E 0.24 TCGA-UE-A6QT-01 13 72440467 72440467 A G DACH1 Silent p.S147S 0.21 TCGA-UE-A6QT-01 16 1843706 1843706 T C IGFALS 5'UTR 0.38 TCGA-UE-A6QT-01 17 66267497 66267497 G A SLC16A6 Silent p.V268V 0.25 TCGA-UE-A6QT-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.18 deleterious(0) probably_damaging(1) TCGA-UE-A6QT-01 17 78086421 78086421 G A GAA Missense_Mutation p.R600H 0.08 deleterious(0) probably_damaging(1) TCGA-UE-A6QT-01 19 17111251 17111251 C T CPAMD8 Silent p.V327V 0.17 TCGA-UE-A6QT-01 1 169562868 169562868 C A SELP Missense_Mutation p.L794F 0.17 deleterious(0.04) probably_damaging(0.995) TCGA-UE-A6QT-01 1 175049496 175049496 A G TNN Missense_Mutation p.I328V 0.23 tolerated(0.57) benign(0.007) TCGA-UE-A6QT-01 1 55315551 55315551 A G DHCR24 3'UTR 0.34 TCGA-UE-A6QT-01 3 139181030 139181030 C T RBP2 Missense_Mutation p.R59H 0.22 deleterious(0.02) benign(0.096) TCGA-UE-A6QT-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.17 tolerated(0.11) possibly_damaging(0.529) TCGA-UE-A6QT-01 3 48717139 48717139 C T NCKIPSD Missense_Mutation p.R453Q 0.10 deleterious(0) benign(0.048) TCGA-UE-A6QT-01 4 71508541 71508541 T C ENAM Silent p.V466V 0.33 TCGA-UE-A6QT-01 5 129072866 129072866 A T ADAMTS19 Missense_Mutation p.E1193D 0.11 tolerated(0.06) benign(0.052) TCGA-UE-A6QT-01 5 140182562 140182562 G A PCDHA3 Missense_Mutation p.V594M 0.08 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-UE-A6QT-01 7 128483309 128483309 C T FLNC Silent p.I859I 0.26 TCGA-UE-A6QT-01 8 10466863 10466863 C T RP1L1 Missense_Mutation p.R1582Q 0.25 unknown(0) TCGA-UE-A6QT-01 X 140996612 140996612 C T MAGEC1 Missense_Mutation p.S1141F 0.24 tolerated_low_confidence(0.11) unknown(0) TCGA-UE-A6QU-01 10 105762686 105762686 T G SLK Missense_Mutation p.L584V 0.20 tolerated(0.27) benign(0.005) TCGA-UE-A6QU-01 10 13365015 13365015 C T SEPHS1 Missense_Mutation p.A262T 0.10 deleterious(0) possibly_damaging(0.806) TCGA-UE-A6QU-01 10 73048357 73048357 T A UNC5B Missense_Mutation p.S312T 0.75 tolerated(0.1) probably_damaging(1) TCGA-UE-A6QU-01 10 79778944 79778944 T G POLR3A Missense_Mutation p.Q422P 0.07 tolerated(0.33) benign(0.393) TCGA-UE-A6QU-01 11 1311571 1311571 C T TOLLIP Silent p.A84A 0.14 TCGA-UE-A6QU-01 11 57982428 57982428 C A OR1S1 Missense_Mutation p.P71H 0.13 deleterious(0) probably_damaging(1) TCGA-UE-A6QU-01 11 64884418 64884418 C T ZNHIT2 Silent p.L236L 0.15 TCGA-UE-A6QU-01 12 112167713 112167713 C G ACAD10 Silent p.L480L 0.16 TCGA-UE-A6QU-01 12 132466098 132466098 G A EP400 Silent p.A500A 0.10 TCGA-UE-A6QU-01 12 133733335 133733335 G A ZNF10 Silent p.K501K 0.16 TCGA-UE-A6QU-01 12 5023730 5023730 A T KCNA1 3'UTR 0.16 TCGA-UE-A6QU-01 12 75784888 75784888 C T GLIPR1L2 5'UTR 0.11 TCGA-UE-A6QU-01 13 114538712 114538712 T C GAS6 Intron 0.34 TCGA-UE-A6QU-01 14 70512750 70512750 C T SLC8A3 Missense_Mutation p.A900T 0.24 deleterious(0.02) possibly_damaging(0.679) TCGA-UE-A6QU-01 15 34015055 34015055 C G RYR3 Missense_Mutation p.N2253K 0.13 benign(0.027) TCGA-UE-A6QU-01 15 63893606 63893606 G A FBXL22 Silent p.E155E 0.19 TCGA-UE-A6QU-01 16 424137 424137 G A TMEM8A Silent p.C590C 0.16 TCGA-UE-A6QU-01 16 737641 737641 G A WDR24 Missense_Mutation p.R194W 0.12 deleterious(0) probably_damaging(1) TCGA-UE-A6QU-01 16 85146108 85146108 C G FAM92B 5'UTR 0.46 TCGA-UE-A6QU-01 17 11603120 11603120 C A DNAH9 Missense_Mutation p.P1649T 0.43 benign(0.062) TCGA-UE-A6QU-01 17 21319286 21319286 T A KCNJ12 Missense_Mutation p.L211H 0.05 deleterious(0) probably_damaging(1) TCGA-UE-A6QU-01 17 3769248 3769248 C A CAMKK1 Missense_Mutation p.A505S 0.28 tolerated(1) benign(0.023) TCGA-UE-A6QU-01 17 38240109 38240109 C T THRA Nonsense_Mutation p.Q82* 0.39 TCGA-UE-A6QU-01 17 649104 649104 C G GEMIN4 Missense_Mutation p.D727H 0.05 deleterious(0) probably_damaging(0.971) TCGA-UE-A6QU-01 17 72937678 72937678 A G OTOP3 Silent p.Q88Q 0.19 TCGA-UE-A6QU-01 17 76497860 76497860 G A DNAH17 Silent p.H1751H 0.19 TCGA-UE-A6QU-01 18 117194 117194 C G ROCK1P1 RNA 0.20 TCGA-UE-A6QU-01 18 117295 117295 C A ROCK1P1 RNA 0.24 TCGA-UE-A6QU-01 18 60630681 60630681 C G PHLPP1 Missense_Mutation p.T1179S 0.15 tolerated(0.49) probably_damaging(0.92) TCGA-UE-A6QU-01 19 10370387 10370387 A T MRPL4 Silent p.S278S 0.09 TCGA-UE-A6QU-01 19 17988575 17988575 G C SLC5A5 Missense_Mutation p.V248L 0.19 tolerated(0.19) benign(0.042) TCGA-UE-A6QU-01 19 41450278 41450278 G A AC092071.1 5'Flank 0.23 TCGA-UE-A6QU-01 19 43576028 43576028 G A PSG2 Missense_Mutation p.A263V 0.14 tolerated(0.07) benign(0.32) TCGA-UE-A6QU-01 19 49207147 49207147 C T FUT2 Missense_Mutation p.P312S 0.13 deleterious(0) probably_damaging(0.967) TCGA-UE-A6QU-01 19 58438975 58438975 A G ZNF418 Missense_Mutation p.C192R 0.34 deleterious(0.03) possibly_damaging(0.761) TCGA-UE-A6QU-01 19 8146270 8146270 C T FBN3 Silent p.L2436L 0.14 TCGA-UE-A6QU-01 1 149915318 149915318 C T OTUD7B 3'UTR 0.11 TCGA-UE-A6QU-01 1 177977224 177977224 G C RP11-568K15.1 RNA 0.29 TCGA-UE-A6QU-01 1 177977233 177977233 G T RP11-568K15.1 RNA 0.29 TCGA-UE-A6QU-01 1 183112369 183112369 G C LAMC1 3'UTR 0.10 TCGA-UE-A6QU-01 1 202183341 202183341 G A LGR6 Intron 0.35 TCGA-UE-A6QU-01 1 203839223 203839223 T - SNRPE 3'UTR 0.32 TCGA-UE-A6QU-01 1 214816647 214816647 C T CENPF Missense_Mutation p.L1656F 0.14 possibly_damaging(0.803) TCGA-UE-A6QU-01 1 240255905 240255905 G T FMN2 Missense_Mutation p.A166S 0.12 unknown(0) TCGA-UE-A6QU-01 1 28906964 28906964 C G TRNAU1AP 3'Flank 0.15 TCGA-UE-A6QU-01 20 19915798 19915798 C G RIN2 Missense_Mutation p.T87R 0.08 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-UE-A6QU-01 20 41306780 41306780 A T PTPRT Silent p.A293A 0.09 TCGA-UE-A6QU-01 20 61340977 61340977 G T NTSR1 Missense_Mutation p.G140C 0.27 deleterious(0.04) possibly_damaging(0.831) TCGA-UE-A6QU-01 20 62367553 62367553 G A ZGPAT 3'Flank 0.51 TCGA-UE-A6QU-01 2 220167489 220167489 C T PTPRN Missense_Mutation p.A150T 0.12 tolerated(0.57) benign(0.007) TCGA-UE-A6QU-01 2 46613096 46613096 G C EPAS1 3'UTR 0.24 TCGA-UE-A6QU-01 2 55254362 55254363 CT - RTN4 Frame_Shift_Del p.E291Vfs*29 0.19 TCGA-UE-A6QU-01 3 126327364 126327364 C T TXNRD3 Missense_Mutation p.G669E 0.23 deleterious(0) probably_damaging(1) TCGA-UE-A6QU-01 3 13613122 13613122 C T FBLN2 Missense_Mutation p.P423S 0.15 tolerated(0.12) probably_damaging(0.987) TCGA-UE-A6QU-01 3 161146958 161146958 T C RP11-3P17.5 RNA 0.09 TCGA-UE-A6QU-01 3 172224251 172224251 T A TNFSF10 3'UTR 0.18 TCGA-UE-A6QU-01 3 25622051 25622051 C T RARB Silent p.D208D 0.13 TCGA-UE-A6QU-01 4 106196378 106196378 A T TET2 Nonsense_Mutation p.R1571* 0.22 TCGA-UE-A6QU-01 4 53522688 53522688 G C USP46 Intron 0.25 TCGA-UE-A6QU-01 4 89772181 89772181 A G FAM13A Silent p.L333L 0.29 TCGA-UE-A6QU-01 5 122154579 122154579 C T SNX2 Missense_Mutation p.T358I 0.07 deleterious(0) probably_damaging(0.988) TCGA-UE-A6QU-01 5 167674967 167674967 G A TENM2 Silent p.S2341S 0.21 TCGA-UE-A6QU-01 5 180048109 180048109 A T FLT4 Missense_Mutation p.S722T 0.08 deleterious(0) possibly_damaging(0.79) TCGA-UE-A6QU-01 5 180622493 180622493 C T TRIM7 Silent p.V403V 0.17 TCGA-UE-A6QU-01 5 180622664 180622664 C T TRIM7 Silent p.L346L 0.11 TCGA-UE-A6QU-01 5 60199496 60199496 A T ERCC8 Missense_Mutation p.S177T 0.18 deleterious(0.01) possibly_damaging(0.509) TCGA-UE-A6QU-01 6 34003463 34003463 G C GRM4 Silent p.T808T 0.22 TCGA-UE-A6QU-01 6 36492187 36492187 C T STK38 Silent p.L79L 0.28 TCGA-UE-A6QU-01 6 41035009 41035009 C T OARD1 3'UTR 0.07 TCGA-UE-A6QU-01 6 56358840 56358840 C T DST Missense_Mutation p.E4165K 0.38 possibly_damaging(0.874) TCGA-UE-A6QU-01 7 112095901 112095901 C T IFRD1 Missense_Mutation p.P60S 0.07 tolerated(0.89) benign(0.178) TCGA-UE-A6QU-01 7 150713315 150713315 C G ATG9B Missense_Mutation p.Q842H 0.17 tolerated(1) benign(0) TCGA-UE-A6QU-01 7 65157767 65157767 G A INTS4L2 RNA 0.08 TCGA-UE-A6QU-01 7 796579 796579 C A HEATR2 Missense_Mutation p.A473E 0.25 tolerated(0.8) benign(0.001) TCGA-UE-A6QU-01 7 86974739 86974739 C T CROT 5'Flank 0.15 TCGA-UE-A6QU-01 7 87746112 87746112 T G ADAM22 Missense_Mutation p.L197W 0.14 deleterious(0.03) benign(0.353) TCGA-UE-A6QU-01 8 120431473 120431473 T C NOV Missense_Mutation p.M222T 0.14 tolerated(0.15) benign(0.144) TCGA-UE-A6QU-01 8 21890701 21890701 G A NPM2 Missense_Mutation p.G111R 0.08 deleterious(0) probably_damaging(1) TCGA-UE-A6QU-01 8 21891645 21891645 G C NPM2 Missense_Mutation p.E130D 0.18 tolerated(0.16) benign(0.083) TCGA-UE-A6QU-01 8 21891682 21891682 G C NPM2 Missense_Mutation p.E143Q 0.24 deleterious(0.01) possibly_damaging(0.88) TCGA-UE-A6QU-01 8 38264976 38264976 G A LETM2 Missense_Mutation p.E423K 0.16 tolerated_low_confidence(0.14) benign(0.01) TCGA-UE-A6QU-01 9 100105638 100105638 A G CCDC180 Missense_Mutation p.E808G 0.22 tolerated(0.13) benign(0.001) TCGA-UE-A6QU-01 9 131708693 131708693 C T DOLK Missense_Mutation p.R297H 0.06 deleterious(0) probably_damaging(0.999) TCGA-UE-A6QU-01 9 133513558 133513558 G A FUBP3 3'UTR 0.13 TCGA-UE-A6QU-01 9 140175429 140175429 C G TOR4A 3'UTR 0.31 TCGA-UE-A6QU-01 9 37424844 37424844 G T GRHPR Missense_Mutation p.C29F 0.25 tolerated(0.08) benign(0.113) TCGA-UE-A6QU-01 9 72003271 72003271 G C FAM189A2 Missense_Mutation p.D352H 0.14 deleterious(0) probably_damaging(0.996) TCGA-UE-A6QU-01 9 77343190 77343190 T C TRPM6 Missense_Mutation p.H1967R 0.28 tolerated(1) benign(0) TCGA-UE-A6QU-01 X 144911195 144911195 G A TMEM257 3'UTR 0.13 TCGA-UE-A6QU-01 X 17751671 17751700 AAAAATAAAACCTAAGCATGCCACAGAGCT - NHS 3'UTR 0.14 TCGA-UE-A6QU-01 X 34148570 34148570 C T FAM47A Missense_Mutation p.R609H 0.10 tolerated(0.14) probably_damaging(0.984) TCGA-UE-A6QU-01 X 62571091 62571091 C T SPIN4 5'UTR 0.11 TCGA-UE-A6QU-01 X 75003967 75003967 G A MAGEE2 Missense_Mutation p.S307L 0.24 deleterious(0.04) probably_damaging(0.978) TCGA-VT-A80G-01 10 48371415 48371415 C T ZNF488 Nonsense_Mutation p.R295* 0.33 TCGA-VT-A80G-01 10 83926485 83926485 C A NRG3 Intron 0.15 TCGA-VT-A80G-01 11 117332286 117332286 G A DSCAML1 Missense_Mutation p.R1158W 0.40 deleterious(0) probably_damaging(0.988) TCGA-VT-A80G-01 11 130102989 130102989 A C ZBTB44 3'UTR 0.50 TCGA-VT-A80G-01 11 57115725 57115725 A T P2RX3 Missense_Mutation p.D158V 0.34 deleterious(0) possibly_damaging(0.859) TCGA-VT-A80G-01 11 5757842 5757842 G C OR56B1 Missense_Mutation p.W32C 0.28 deleterious(0) probably_damaging(0.995) TCGA-VT-A80G-01 11 61058764 61058764 C G VWCE Missense_Mutation p.Q89H 0.20 tolerated(0.13) possibly_damaging(0.864) TCGA-VT-A80G-01 11 6642874 6642874 A G DCHS1 3'UTR 0.13 TCGA-VT-A80G-01 11 71712959 71712959 A G IL18BP 3'UTR 0.48 TCGA-VT-A80G-01 11 92087948 92087948 C T FAT3 Silent p.D890D 0.08 TCGA-VT-A80G-01 12 124421306 124421306 T C CCDC92 3'UTR 0.22 TCGA-VT-A80G-01 12 126128671 126128671 G T TMEM132B Missense_Mutation p.S491I 0.11 deleterious(0) possibly_damaging(0.831) TCGA-VT-A80G-01 12 68707424 68707424 C A MDM1 Missense_Mutation p.G537C 0.60 deleterious(0) probably_damaging(1) TCGA-VT-A80G-01 13 103396722 103396722 T C LINC00283 RNA 0.76 TCGA-VT-A80G-01 13 114150047 114150047 C T TMCO3 Missense_Mutation p.R51W 0.89 deleterious(0.04) benign(0.39) TCGA-VT-A80G-01 13 28877485 28877485 C A FLT1 Missense_Mutation p.S1279I 0.41 deleterious(0.01) probably_damaging(0.937) TCGA-VT-A80G-01 14 74345803 74345803 G A PTGR2 Missense_Mutation p.G175D 0.08 deleterious(0) probably_damaging(0.97) TCGA-VT-A80G-01 14 80329468 80329468 A T NRXN3 3'Flank 0.38 TCGA-VT-A80G-01 15 28482141 28482141 G A HERC2 Missense_Mutation p.T1324I 0.07 possibly_damaging(0.551) TCGA-VT-A80G-01 15 48826355 48826355 A T FBN1 Missense_Mutation p.C262S 0.12 probably_damaging(0.997) TCGA-VT-A80G-01 15 48826356 48826356 A T FBN1 Missense_Mutation p.N261K 0.11 possibly_damaging(0.677) TCGA-VT-A80G-01 16 23478267 23478267 G A GGA2 3'UTR 0.23 TCGA-VT-A80G-01 16 5047002 5047002 G C SEC14L5 Silent p.L309L 0.91 TCGA-VT-A80G-01 16 5056041 5056041 G A SEC14L5 Missense_Mutation p.E477K 0.82 tolerated(0.38) benign(0.02) TCGA-VT-A80G-01 16 74708974 74708974 T G MLKL Missense_Mutation p.K422T 0.12 deleterious(0.01) benign(0.04) TCGA-VT-A80G-01 16 84212906 84212906 T C TAF1C Missense_Mutation p.K751E 0.45 deleterious(0) probably_damaging(0.999) TCGA-VT-A80G-01 17 10408325 10408325 C A MYH1 Missense_Mutation p.W831C 0.09 deleterious(0.01) probably_damaging(1) TCGA-VT-A80G-01 17 16623536 16623536 A G CCDC144A Silent p.E580E 0.14 TCGA-VT-A80G-01 17 20799447 20799447 G A CCDC144NL 5'UTR 0.19 TCGA-VT-A80G-01 17 33849548 33849548 A G SLFN12L 5'UTR 0.30 TCGA-VT-A80G-01 17 38928025 38928025 T G KRT26 Missense_Mutation p.K114T 0.18 deleterious(0) probably_damaging(1) TCGA-VT-A80G-01 17 41020025 41020025 T C AOC4P RNA 0.16 TCGA-VT-A80G-01 17 41116430 41116430 A G AARSD1 Missense_Mutation p.Y10H 0.84 deleterious(0) probably_damaging(0.992) TCGA-VT-A80G-01 17 67293333 67293333 T G ABCA5 Silent p.R479R 0.07 TCGA-VT-A80G-01 17 8006780 8006780 G T ALOXE3 Missense_Mutation p.P738Q 0.21 deleterious(0) probably_damaging(1) TCGA-VT-A80G-01 18 12311026 12311026 T C TUBB6 Missense_Mutation p.L84P 0.05 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-VT-A80G-01 18 33048664 33048664 T C INO80C Missense_Mutation p.I200V 0.37 tolerated(0.44) benign(0.036) TCGA-VT-A80G-01 18 33234543 33234543 A G GALNT1 5'UTR 0.50 TCGA-VT-A80G-01 18 9256918 9256918 C T ANKRD12 Missense_Mutation p.T1218I 0.36 deleterious(0) probably_damaging(0.951) TCGA-VT-A80G-01 19 21475961 21475961 G C ZNF708 3'UTR 0.18 TCGA-VT-A80G-01 19 33428567 33428567 G A CEP89 Missense_Mutation p.P213S 0.32 tolerated(0.39) benign(0.081) TCGA-VT-A80G-01 19 38380088 38380088 T C WDR87 Missense_Mutation p.K1369R 0.05 benign(0.132) TCGA-VT-A80G-01 19 39379792 39379792 T C SIRT2 Missense_Mutation p.T146A 0.37 deleterious(0) probably_damaging(1) TCGA-VT-A80G-01 19 42301725 42301725 C G CEACAM3 Missense_Mutation p.T90S 0.34 tolerated(0.07) probably_damaging(0.961) TCGA-VT-A80G-01 19 44352852 44352852 C T ZNF283 3'UTR 0.16 TCGA-VT-A80G-01 19 45649068 45649068 C T PPP1R37 Missense_Mutation p.A585V 0.11 tolerated(0.17) possibly_damaging(0.499) TCGA-VT-A80G-01 19 51827072 51827072 C T IGLON5 Silent p.G105G 0.11 TCGA-VT-A80G-01 19 52497670 52497670 A G ZNF615 Missense_Mutation p.I231T 0.25 tolerated(0.55) benign(0.001) TCGA-VT-A80G-01 19 54194150 54194150 T C MIR520A RNA 0.30 TCGA-VT-A80G-01 19 56701298 56701298 G A ZSCAN5B Silent p.S462S 0.36 TCGA-VT-A80G-01 19 57665709 57665709 A T DUXA 3'UTR 0.11 TCGA-VT-A80G-01 19 58187894 58187894 A T ZSCAN4 Silent p.I127I 0.58 TCGA-VT-A80G-01 19 9075708 9075708 T G MUC16 Missense_Mutation p.N3913T 0.60 unknown(0) TCGA-VT-A80G-01 1 145528030 145528030 C A ITGA10 Silent p.G89G 0.14 TCGA-VT-A80G-01 1 150689750 150689750 C A HORMAD1 Silent p.L14L 0.24 TCGA-VT-A80G-01 1 152278903 152278903 G A FLG Missense_Mutation p.T2820I 0.12 benign(0.002) TCGA-VT-A80G-01 1 157646365 157646365 T C FCRL3 3'UTR 0.10 TCGA-VT-A80G-01 1 161026255 161026255 C T ARHGAP30 Missense_Mutation p.V90I 0.84 deleterious(0.01) probably_damaging(0.996) TCGA-VT-A80G-01 1 192127851 192127851 A T RGS18 Silent p.S28S 0.13 TCGA-VT-A80G-01 1 241907737 241907737 G T WDR64 Nonsense_Mutation p.E495* 0.85 TCGA-VT-A80G-01 1 26085135 26085135 G C MAN1C1 Missense_Mutation p.G328R 0.15 deleterious(0) probably_damaging(1) TCGA-VT-A80G-01 1 39765937 39765937 G A MACF1 Missense_Mutation p.R851K 0.16 benign(0.207) TCGA-VT-A80G-01 1 6682484 6682484 C T PHF13 3'UTR 0.28 TCGA-VT-A80G-01 1 982235 982235 C A AGRN Missense_Mutation p.P1096T 0.24 tolerated(0.39) benign(0.25) TCGA-VT-A80G-01 20 16360001 16360001 G A KIF16B Silent p.V882V 0.10 TCGA-VT-A80G-01 20 57767443 57767443 C T ZNF831 Missense_Mutation p.R457C 0.18 deleterious(0) probably_damaging(0.992) TCGA-VT-A80G-01 21 10862964 10862964 T C IGHV1OR21-1 Missense_Mutation p.V87A 0.20 tolerated(0.71) possibly_damaging(0.533) TCGA-VT-A80G-01 22 22892229 22892229 T A PRAME Missense_Mutation p.Q291L 0.08 deleterious(0) possibly_damaging(0.559) TCGA-VT-A80G-01 22 36745232 36745232 A G MYH9 Missense_Mutation p.I17T 0.08 benign(0.004) TCGA-VT-A80G-01 22 37154392 37154392 T A IFT27 Missense_Mutation p.Y175F 0.20 deleterious(0) probably_damaging(0.998) TCGA-VT-A80G-01 22 40257846 40257846 A C ENTHD1 Silent p.T172T 0.08 TCGA-VT-A80G-01 22 40762493 40762493 C T ADSL Silent p.S474S 0.22 TCGA-VT-A80G-01 22 43901469 43901469 C T MPPED1 Silent p.I318I 0.24 TCGA-VT-A80G-01 22 43901652 43901652 C G MPPED1 3'UTR 0.25 TCGA-VT-A80G-01 22 43901954 43901954 C A MPPED1 3'UTR 0.21 TCGA-VT-A80G-01 22 43902027 43902027 C T MPPED1 3'UTR 0.24 TCGA-VT-A80G-01 2 103090167 103090167 A C SLC9A4 5'UTR 0.35 TCGA-VT-A80G-01 2 128783869 128783869 C T SAP130 Missense_Mutation p.E26K 0.16 tolerated_low_confidence(0.29) possibly_damaging(0.831) TCGA-VT-A80G-01 2 168108404 168108404 C A XIRP2 Missense_Mutation p.A3501D 0.08 benign(0.05) TCGA-VT-A80G-01 2 170060691 170060691 G C LRP2 Silent p.G2602G 0.10 TCGA-VT-A80G-01 2 232577666 232577666 A G PTMA 3'UTR 0.07 TCGA-VT-A80G-01 2 239133752 239133752 A G AC016757.3 3'Flank 0.14 TCGA-VT-A80G-01 2 61345233 61345233 G A KIAA1841 Silent p.K670K 0.05 TCGA-VT-A80G-01 3 142462346 142462346 T G TRPC1 Missense_Mutation p.V116G 0.06 deleterious(0.01) probably_damaging(0.909) TCGA-VT-A80G-01 3 15711767 15711767 C T ANKRD28 3'UTR 0.41 TCGA-VT-A80G-01 3 179576934 179576934 G A PEX5L Silent p.T246T 0.06 TCGA-VT-A80G-01 3 44966501 44966501 A C ZDHHC3 3'UTR 0.10 TCGA-VT-A80G-01 3 50220202 50220202 G A SEMA3F Missense_Mutation p.G297R 0.14 deleterious(0) probably_damaging(0.979) TCGA-VT-A80G-01 4 151504396 151504396 C A MAB21L2 Missense_Mutation p.T72N 0.34 tolerated(1) benign(0.004) TCGA-VT-A80G-01 4 183720870 183720870 T C TENM3 Missense_Mutation p.F2489S 0.34 deleterious(0) possibly_damaging(0.665) TCGA-VT-A80G-01 4 24542566 24542566 G C DHX15 Missense_Mutation p.N497K 0.26 deleterious(0.03) benign(0.354) TCGA-VT-A80G-01 4 68514858 68514858 T C UBA6 Silent p.A392A 0.33 TCGA-VT-A80G-01 4 71686565 71686565 C A GRSF1 3'UTR 0.52 TCGA-VT-A80G-01 4 79461845 79461845 T C FRAS1 Missense_Mutation p.I3869T 0.30 possibly_damaging(0.855) TCGA-VT-A80G-01 4 89574169 89574169 C T HERC3 Silent p.L205L 0.38 TCGA-VT-A80G-01 5 140555156 140555156 T G PCDHB7 3'UTR 0.45 TCGA-VT-A80G-01 5 149245772 149245772 T C PDE6A Silent p.Q773Q 0.44 TCGA-VT-A80G-01 5 153854826 153854826 A G HAND1 3'UTR 0.39 TCGA-VT-A80G-01 6 28403655 28403655 A G ZSCAN23 Missense_Mutation p.L130P 0.13 deleterious(0) probably_damaging(0.973) TCGA-VT-A80G-01 6 36353379 36353379 T C ETV7 Missense_Mutation p.Q25R 0.32 tolerated(0.28) benign(0.013) TCGA-VT-A80G-01 6 39873655 39873655 C A MOCS1 3'UTR 0.12 TCGA-VT-A80G-01 6 45517633 45517633 T C RUNX2 3'UTR 0.36 TCGA-VT-A80G-01 6 7398933 7398933 A G RIOK1 Missense_Mutation p.Y147C 0.49 tolerated(0.1) benign(0.062) TCGA-VT-A80G-01 7 151859896 151859896 A G KMT2C Missense_Mutation p.L3589P 0.05 probably_damaging(0.999) TCGA-VT-A80G-01 7 29874401 29874401 C T WIPF3 Missense_Mutation p.P21S 0.23 tolerated_low_confidence(0.38) unknown(0) TCGA-VT-A80G-01 7 5024700 5024700 C T RBAK-RBAKDN 5'UTR 0.04 TCGA-VT-A80G-01 7 51096413 51096413 T A COBL Missense_Mutation p.T794S 0.41 tolerated(0.44) benign(0.006) TCGA-VT-A80G-01 7 75167471 75167471 C T HIP1 3'UTR 0.55 TCGA-VT-A80G-01 7 82578814 82578814 A T PCLO Missense_Mutation p.F3697Y 0.34 unknown(0) TCGA-VT-A80G-01 7 94937415 94937415 C G PON1 Missense_Mutation p.W202C 0.29 deleterious(0.03) benign(0.414) TCGA-VT-A80G-01 7 98524924 98524924 G A TRRAP Missense_Mutation p.S1037N 0.06 benign(0.085) TCGA-VT-A80G-01 8 104709367 104709367 A C RIMS2 Missense_Mutation p.E77A 0.14 tolerated_low_confidence(0.17) possibly_damaging(0.637) TCGA-VT-A80G-01 8 139729072 139729072 T C COL22A1 Missense_Mutation p.E799G 0.51 probably_damaging(0.999) TCGA-VT-A80G-01 8 86573431 86573431 G A REXO1L1P 3'UTR 0.04 TCGA-VT-A80G-01 9 130922685 130922685 C G C9orf16 5'UTR 0.37 TCGA-VT-A80G-01 9 134343099 134343099 C A PRRC2B Missense_Mutation p.L624I 0.34 tolerated(0.08) benign(0.032) TCGA-VT-A80G-01 9 136029135 136029135 G A GBGT1 Silent p.I291I 0.31 TCGA-VT-A80G-01 9 5300071 5300071 T A RLN2 3'UTR 0.14 TCGA-VT-A80G-01 9 75777682 75777724 TTTTCTTTTTTCTCAGAACTGAAGAGAGATCTGGCCAAAGACA GTT ANXA1 Splice_Site p.X159_splice 0.31 TCGA-VT-A80G-01 9 84607869 84607869 T C SPATA31D1 Silent p.N828N 0.53 TCGA-VT-A80G-01 X 102632900 102632900 T A NGFRAP1 3'UTR 0.41 TCGA-VT-A80G-01 X 151092443 151092443 G C MAGEA4 Missense_Mutation p.E103Q 0.82 deleterious(0.04) possibly_damaging(0.904) TCGA-VT-A80G-01 X 153537793 153537793 A T TKTL1 Missense_Mutation p.S117C 0.70 deleterious(0.01) probably_damaging(0.976) TCGA-VT-A80J-01 10 101474185 101474185 C T COX15 3'UTR 0.23 TCGA-VT-A80J-01 10 124672427 124672427 A G FAM24A Missense_Mutation p.D92G 0.05 tolerated(0.19) probably_damaging(0.99) TCGA-VT-A80J-01 10 85982349 85982349 C T LRIT2 Missense_Mutation p.C327Y 0.19 deleterious(0) probably_damaging(1) TCGA-VT-A80J-01 11 118272189 118272189 C G ATP5L 5'UTR 0.03 TCGA-VT-A80J-01 11 33566628 33566628 A G KIAA1549L Missense_Mutation p.D733G 0.27 tolerated_low_confidence(1) benign(0) TCGA-VT-A80J-01 11 44104733 44104733 G T ACCS Missense_Mutation p.V376L 0.26 tolerated(0.05) benign(0.367) TCGA-VT-A80J-01 11 57003580 57003580 A G APLNR Missense_Mutation p.V300A 0.39 deleterious(0) benign(0.112) TCGA-VT-A80J-01 12 12674149 12674149 G T DUSP16 5'UTR 0.18 TCGA-VT-A80J-01 13 53418537 53418537 T G PCDH8 3'UTR 0.06 TCGA-VT-A80J-01 14 105413459 105413459 A G AHNAK2 Missense_Mutation p.S2777P 0.13 benign(0.001) TCGA-VT-A80J-01 14 21162109 21162109 T A ANG Missense_Mutation p.V129D 0.28 deleterious(0) probably_damaging(0.958) TCGA-VT-A80J-01 14 63416664 63416664 G A KCNH5 Intron 0.33 TCGA-VT-A80J-01 15 52515824 52515824 G A MYO5C Missense_Mutation p.H1182Y 0.27 deleterious(0.01) possibly_damaging(0.493) TCGA-VT-A80J-01 15 88576173 88576173 A T NTRK3 Silent p.T500T 0.07 TCGA-VT-A80J-01 16 3065446 3065446 G A CLDN6 Missense_Mutation p.P193S 0.32 tolerated(0.33) benign(0) TCGA-VT-A80J-01 17 10428239 10428239 G A MYH2 Silent p.S1602S 0.22 TCGA-VT-A80J-01 17 17697974 17697974 C G RAI1 Missense_Mutation p.S571C 0.21 deleterious(0) probably_damaging(0.999) TCGA-VT-A80J-01 17 34842785 34842785 G C ZNHIT3 Silent p.S31S 0.13 TCGA-VT-A80J-01 17 34862803 34862803 T C MYO19 Missense_Mutation p.K548R 0.15 tolerated(0.43) probably_damaging(0.999) TCGA-VT-A80J-01 17 47589389 47589389 C A NGFR Silent p.P319P 0.10 TCGA-VT-A80J-01 17 7578393 7578393 A C TP53 Missense_Mutation p.H179Q 0.09 deleterious(0) probably_damaging(1) TCGA-VT-A80J-01 18 77513699 77513699 G T CTDP1 Missense_Mutation p.S932I 0.13 deleterious(0.01) probably_damaging(0.98) TCGA-VT-A80J-01 19 1990085 1990085 C T BTBD2 Silent p.T302T 0.18 TCGA-VT-A80J-01 19 36244131 36244131 C G LIN37 Missense_Mutation p.P141A 0.11 tolerated(0.17) benign(0.01) TCGA-VT-A80J-01 19 40889744 40889744 G A HIPK4 Silent p.D256D 0.30 TCGA-VT-A80J-01 19 51215298 51215298 A G SHANK1 Missense_Mutation p.M289T 0.17 possibly_damaging(0.838) TCGA-VT-A80J-01 1 1387815 1387815 G A ATAD3C Splice_Site p.X74_splice 0.08 TCGA-VT-A80J-01 1 150484038 150484038 G T ECM1 Nonsense_Mutation p.E299* 0.30 TCGA-VT-A80J-01 1 152328366 152328366 G C FLG2 Silent p.G632G 0.19 TCGA-VT-A80J-01 1 165677941 165677941 C T RP11-466F5.10 5'Flank 0.26 TCGA-VT-A80J-01 1 206758555 206758555 G C RASSF5 Silent p.L344L 0.06 TCGA-VT-A80J-01 1 237167633 237167633 C T MT1HL1 Missense_Mutation p.A14T 0.14 tolerated(1) unknown(0) TCGA-VT-A80J-01 1 248263793 248263793 A G OR2L13 3'UTR 0.12 TCGA-VT-A80J-01 1 27326783 27326783 C T TRNP1 3'UTR 0.14 TCGA-VT-A80J-01 1 32503558 32503558 C T KHDRBS1 Missense_Mutation p.P343L 0.08 tolerated(0.26) probably_damaging(0.927) TCGA-VT-A80J-01 1 62149205 62149205 G A TM2D1 Missense_Mutation p.S238L 0.22 deleterious(0.02) possibly_damaging(0.894) TCGA-VT-A80J-01 20 25422336 25422336 A G GINS1 Splice_Site p.X150_splice 0.11 TCGA-VT-A80J-01 20 31380574 31380574 C A DNMT3B Missense_Mutation p.P355Q 0.08 deleterious(0.03) possibly_damaging(0.655) TCGA-VT-A80J-01 20 34761735 34761735 G A EPB41L1 Silent p.K12K 0.13 TCGA-VT-A80J-01 20 54941148 54941148 C G FAM210B Missense_Mutation p.I128M 0.07 tolerated(0.06) possibly_damaging(0.542) TCGA-VT-A80J-01 20 58577889 58577889 C G CDH26 Missense_Mutation p.P730A 0.14 tolerated(0.79) benign(0.031) TCGA-VT-A80J-01 22 23223290 23223290 C T IGLV3-1 Silent p.S20S 0.12 TCGA-VT-A80J-01 2 131672747 131672747 C T ARHGEF4 5'Flank 0.22 TCGA-VT-A80J-01 2 136530072 136530072 A G UBXN4 Missense_Mutation p.Q302R 0.13 deleterious(0.03) benign(0.009) TCGA-VT-A80J-01 2 198353146 198353146 T - HSPD1 Frame_Shift_Del p.R429Efs*26 0.16 TCGA-VT-A80J-01 2 211179643 211179643 C T MYL1 Missense_Mutation p.A42T 0.15 tolerated(0.3) benign(0.084) TCGA-VT-A80J-01 2 211540493 211540493 C A CPS1 Missense_Mutation p.N1407K 0.11 deleterious(0.05) benign(0.407) TCGA-VT-A80J-01 2 212242109 212242109 T A ERBB4 3'UTR 0.24 TCGA-VT-A80J-01 2 220094520 220094520 C T ANKZF1 5'UTR 0.29 TCGA-VT-A80J-01 2 233349291 233349291 G A ECEL1 Silent p.L359L 0.20 TCGA-VT-A80J-01 2 33952141 33952141 C T AC009499.1 Intron 0.11 TCGA-VT-A80J-01 3 101293046 101293046 C T PCNP 5'UTR 0.24 TCGA-VT-A80J-01 3 138213752 138213752 G A CEP70 3'UTR 0.05 TCGA-VT-A80J-01 3 28365913 28365913 C A AZI2 Nonsense_Mutation p.G267* 0.09 TCGA-VT-A80J-01 3 49162045 49162045 C T LAMB2 Missense_Mutation p.R1037H 0.17 deleterious(0) probably_damaging(0.95) TCGA-VT-A80J-01 4 62383199 62383199 C T LPHN3 Intron 0.11 TCGA-VT-A80J-01 4 73013005 73013005 T C NPFFR2 Missense_Mutation p.F349L 0.08 tolerated(0.08) benign(0.378) TCGA-VT-A80J-01 4 95496864 95496864 G T PDLIM5 Intron 0.18 TCGA-VT-A80J-01 5 32227436 32227436 G T MTMR12 3'UTR 0.30 TCGA-VT-A80J-01 5 40841684 40841684 A G CARD6 Missense_Mutation p.K67R 0.05 deleterious(0.05) benign(0.335) TCGA-VT-A80J-01 5 75913366 75913366 G A F2RL2 3'UTR 0.17 TCGA-VT-A80J-01 5 89971084 89971084 T C GPR98 Missense_Mutation p.L1712P 0.11 probably_damaging(0.979) TCGA-VT-A80J-01 6 148846428 148846428 G T SASH1 Missense_Mutation p.R404I 0.30 deleterious(0) possibly_damaging(0.817) TCGA-VT-A80J-01 6 25665219 25665219 C T SCGN Missense_Mutation p.R99C 0.29 deleterious(0) probably_damaging(0.994) TCGA-VT-A80J-01 6 76023331 76023331 A G FILIP1 Silent p.D739D 0.14 TCGA-VT-A80J-01 7 100678507 100678507 C A MUC17 Silent p.T1270T 0.11 TCGA-VT-A80J-01 7 104440426 104440426 A T LHFPL3 Intron 0.11 TCGA-VT-A80J-01 7 127235400 127235400 G A FSCN3 Missense_Mutation p.A62T 0.09 tolerated(0.22) benign(0.221) TCGA-VT-A80J-01 7 5570197 5570197 G A ACTB 5'UTR 0.10 TCGA-VT-A80J-01 7 97835404 97835404 G C LMTK2 3'UTR 0.18 TCGA-VT-A80J-01 8 132051899 132051899 G A ADCY8 Silent p.C227C 0.24 TCGA-VT-A80J-01 8 135490898 135490898 C T ZFAT Missense_Mutation p.V1187M 0.15 tolerated(0.06) probably_damaging(0.983) TCGA-VT-A80J-01 8 1496919 1496919 T C DLGAP2 Silent p.G20G 0.23 TCGA-VT-A80J-01 8 328029 328029 A G FAM87A RNA 0.15 TCGA-VT-A80J-01 8 95677276 95677276 C T ESRP1 Missense_Mutation p.R293W 0.21 deleterious(0) probably_damaging(1) TCGA-VT-A80J-01 9 140507315 140507315 T A ARRDC1 Intron 0.11 TCGA-VT-A80J-01 X 117960020 117960020 C T ZCCHC12 Silent p.D271D 0.31 TCGA-VT-A80J-01 X 118587820 118587820 C T SLC25A43 3'UTR 0.20 TCGA-VT-A80J-01 X 2748131 2748131 C T GYG2 5'UTR 0.09 TCGA-VT-A80J-01 X 33229530 33229530 C G DMD 5'UTR 0.20 TCGA-VT-A80J-01 X 51638173 51638173 G A MAGED1 Missense_Mutation p.A80T 0.15 tolerated_low_confidence(1) unknown(0) TCGA-VT-AB3D-01 10 119026536 119026536 G A SLC18A2 Missense_Mutation p.S371N 0.07 deleterious(0.04) possibly_damaging(0.868) TCGA-VT-AB3D-01 10 134726753 134726753 G T TTC40 Silent p.I710I 0.22 TCGA-VT-AB3D-01 11 100996760 100996760 G C PGR Silent p.V589V 0.10 TCGA-VT-AB3D-01 11 113148206 113148206 G T NCAM1 3'Flank 0.18 TCGA-VT-AB3D-01 11 113281640 113281640 C T DRD2 Missense_Mutation p.V381M 0.38 deleterious(0) possibly_damaging(0.901) TCGA-VT-AB3D-01 11 404615 404615 G A PKP3 3'UTR 0.15 TCGA-VT-AB3D-01 11 60264870 60264870 G T MS4A12 Missense_Mutation p.A27S 0.23 tolerated(0.1) benign(0.167) TCGA-VT-AB3D-01 11 7817740 7817740 G T OR5P2 Silent p.T250T 0.17 TCGA-VT-AB3D-01 12 13717133 13717133 G A GRIN2B Silent p.T1013T 0.12 TCGA-VT-AB3D-01 12 29496070 29496070 C A ERGIC2 Missense_Mutation p.G324V 0.15 deleterious(0) probably_damaging(0.999) TCGA-VT-AB3D-01 12 45307678 45307678 T A NELL2 5'UTR 0.17 TCGA-VT-AB3D-01 12 72180300 72180300 G C RAB21 3'UTR 0.06 TCGA-VT-AB3D-01 12 82792999 82792999 T C METTL25 Silent p.P319P 0.06 TCGA-VT-AB3D-01 12 9243024 9243024 C G A2M Missense_Mutation p.E842Q 0.11 tolerated(0.22) benign(0.004) TCGA-VT-AB3D-01 12 9248236 9248236 C T A2M Missense_Mutation p.D638N 0.10 tolerated(0.09) benign(0.009) TCGA-VT-AB3D-01 14 52196759 52196759 G T FRMD6 3'Flank 0.25 TCGA-VT-AB3D-01 15 40505677 40505677 T C BUB1B Splice_Site p.X893_splice 0.17 TCGA-VT-AB3D-01 15 77907399 77907399 G A LINGO1 Missense_Mutation p.R284C 0.08 deleterious(0) possibly_damaging(0.567) TCGA-VT-AB3D-01 15 88522367 88522367 G A NTRK3 Intron 0.19 TCGA-VT-AB3D-01 17 18082395 18082395 G T MYO15A 3'UTR 0.14 TCGA-VT-AB3D-01 17 79080670 79080670 A G BAIAP2 Missense_Mutation p.Q488R 0.25 tolerated(0.25) benign(0.003) TCGA-VT-AB3D-01 17 8700616 8700616 T C MFSD6L 3'UTR 0.11 TCGA-VT-AB3D-01 18 40853554 40853554 T C SYT4 Silent p.R280R 0.18 TCGA-VT-AB3D-01 19 12501079 12501079 C T ZNF799 3'UTR 0.11 TCGA-VT-AB3D-01 19 22363208 22363208 A T ZNF676 Silent p.T437T 0.08 TCGA-VT-AB3D-01 19 3594877 3594877 G A TBXA2R Missense_Mutation p.P394L 0.09 deleterious_low_confidence(0) possibly_damaging(0.856) TCGA-VT-AB3D-01 19 51628383 51628383 T A SIGLEC9 Missense_Mutation p.I51N 0.07 tolerated(0.44) benign(0.01) TCGA-VT-AB3D-01 19 53513293 53513293 A C ERVV-1 5'Flank 0.33 TCGA-VT-AB3D-01 19 56089590 56089590 C T ZNF579 Silent p.A472A 0.12 TCGA-VT-AB3D-01 1 111494597 111494597 A T LRIF1 Silent p.S303S 0.10 TCGA-VT-AB3D-01 1 167847809 167847809 G A ADCY10 Silent p.C427C 0.06 TCGA-VT-AB3D-01 1 180905484 180905484 G A KIAA1614 Silent p.S813S 0.09 TCGA-VT-AB3D-01 1 183595745 183595745 C T ARPC5 3'UTR 0.20 TCGA-VT-AB3D-01 1 228451851 228451851 G A OBSCN Silent p.A1724A 0.17 TCGA-VT-AB3D-01 1 28920398 28920398 G A RAB42 Silent p.Q29Q 0.12 TCGA-VT-AB3D-01 1 29444350 29444352 TTC - EPB41 3'UTR 0.25 TCGA-VT-AB3D-01 1 31465507 31465507 G T PUM1 Missense_Mutation p.S296R 0.15 tolerated(0.08) benign(0.347) TCGA-VT-AB3D-01 1 40362903 40362903 G A MYCL 3'UTR 0.12 TCGA-VT-AB3D-01 1 55251777 55251777 C T TTC22 Missense_Mutation p.R300H 0.10 tolerated(0.15) benign(0.039) TCGA-VT-AB3D-01 20 2125191 2125191 A G STK35 3'UTR 0.15 TCGA-VT-AB3D-01 20 55949675 55949675 G A RAE1 Missense_Mutation p.A280T 0.13 tolerated(0.14) possibly_damaging(0.702) TCGA-VT-AB3D-01 21 15870817 15870817 G A SAMSN1 Missense_Mutation p.P357S 0.10 tolerated(0.1) benign(0.028) TCGA-VT-AB3D-01 22 21330954 21330954 G T AIFM3 Missense_Mutation p.A349S 0.15 tolerated(0.36) probably_damaging(0.928) TCGA-VT-AB3D-01 22 40055726 40055726 G A CACNA1I Missense_Mutation p.V825I 0.35 tolerated(0.08) benign(0.312) TCGA-VT-AB3D-01 2 170060615 170060615 C T LRP2 Missense_Mutation p.A2628T 0.08 benign(0.206) TCGA-VT-AB3D-01 2 200245158 200245158 G A SATB2 Missense_Mutation p.R176C 0.13 deleterious(0) probably_damaging(0.997) TCGA-VT-AB3D-01 2 222283642 222283642 C G EPHA4 3'UTR 0.13 TCGA-VT-AB3D-01 2 236817475 236817475 T A AGAP1 Missense_Mutation p.C417S 0.21 tolerated(0.13) benign(0.349) TCGA-VT-AB3D-01 2 241657531 241657531 C T KIF1A Missense_Mutation p.A1757T 0.21 tolerated(0.54) benign(0.002) TCGA-VT-AB3D-01 2 74643122 74643122 C A C2orf81 Intron 0.12 TCGA-VT-AB3D-01 2 88387480 88387480 C T SMYD1 Silent p.H138H 0.13 TCGA-VT-AB3D-01 2 9597080 9597080 A G CPSF3 Missense_Mutation p.E541G 0.09 tolerated(0.14) benign(0.005) TCGA-VT-AB3D-01 3 14105528 14105528 A G TPRXL 5'UTR 0.12 TCGA-VT-AB3D-01 4 143159017 143159017 C A INPP4B Missense_Mutation p.R279I 0.12 deleterious(0) probably_damaging(1) TCGA-VT-AB3D-01 4 155487708 155487708 A G FGB Missense_Mutation p.N125S 0.13 tolerated(0.46) benign(0.001) TCGA-VT-AB3D-01 4 170641392 170641392 G A CLCN3 3'UTR 0.14 TCGA-VT-AB3D-01 4 187554873 187554873 C A FAT1 Nonsense_Mutation p.E1430* 0.09 TCGA-VT-AB3D-01 4 42119561 42119561 T G BEND4 Missense_Mutation p.S527R 0.26 deleterious_low_confidence(0.01) benign(0.006) TCGA-VT-AB3D-01 4 47945298 47945298 C A CNGA1 Missense_Mutation p.D186Y 0.15 deleterious(0.02) benign(0.332) TCGA-VT-AB3D-01 4 74852803 74852803 T C PPBP 3'UTR 0.21 TCGA-VT-AB3D-01 5 111312594 111312594 A T NREP 5'UTR 0.15 TCGA-VT-AB3D-01 5 66429429 66429429 C T MAST4 Silent p.Y727Y 0.12 TCGA-VT-AB3D-01 6 160201010 160201010 A G TCP1 Silent p.L403L 0.13 TCGA-VT-AB3D-01 6 26390257 26390257 C A BTN2A2 Missense_Mutation p.P250H 0.08 tolerated(0.06) benign(0.046) TCGA-VT-AB3D-01 7 100365463 100365463 C T ZAN Missense_Mutation p.H1624Y 0.31 unknown(0) TCGA-VT-AB3D-01 7 107115000 107115000 G T GPR22 Missense_Mutation p.W165C 0.17 deleterious(0) probably_damaging(0.999) TCGA-VT-AB3D-01 7 71275389 71275389 T C CALN1 Missense_Mutation p.N197S 0.07 deleterious(0.04) probably_damaging(0.98) TCGA-VT-AB3D-01 8 145154476 145154476 C T SHARPIN Silent p.A235A 0.13 TCGA-VT-AB3D-01 8 18079531 18079531 G A NAT1 Intron 0.09 TCGA-VT-AB3D-01 8 41367890 41367890 C T GOLGA7 3'UTR 0.06 TCGA-VT-AB3D-01 8 42565534 42565534 A G CHRNB3 Missense_Mutation p.D69G 0.06 deleterious(0) possibly_damaging(0.763) TCGA-VT-AB3D-01 9 119625969 119625969 G A ASTN2 Silent p.L594L 0.04 TCGA-VT-AB3D-01 9 130453277 130453277 G T STXBP1 3'UTR 0.18 TCGA-VT-AB3D-01 9 139752912 139752912 G T MAMDC4 Missense_Mutation p.G912V 0.14 deleterious(0) probably_damaging(0.978) TCGA-VT-AB3D-01 9 79933265 79933265 G A VPS13A Missense_Mutation p.D1691N 0.22 tolerated(0.58) benign(0.047) TCGA-VT-AB3D-01 X 76939697 76939697 C A ATRX Nonsense_Mutation p.E351* 0.22 TCGA-WK-A8XO-01 11 118371737 118371737 G A KMT2A Missense_Mutation p.R2065H 0.17 probably_damaging(0.999) TCGA-WK-A8XO-01 11 47193866 47193866 A G ARFGAP2 Missense_Mutation p.I213T 0.25 deleterious(0) benign(0.211) TCGA-WK-A8XO-01 11 59189457 59189457 C A OR5A2 Missense_Mutation p.G324C 0.31 deleterious_low_confidence(0.03) probably_damaging(0.965) TCGA-WK-A8XO-01 11 88911205 88911205 G C TYR Missense_Mutation p.K28N 0.26 deleterious(0.01) benign(0.097) TCGA-WK-A8XO-01 11 9007284 9007284 C T NRIP3 Missense_Mutation p.R179H 0.10 tolerated(0.42) benign(0.005) TCGA-WK-A8XO-01 11 96119421 96119421 A T CCDC82 5'UTR 0.21 TCGA-WK-A8XO-01 12 49426727 49426727 G - KMT2D Frame_Shift_Del p.Q3921Nfs*58 0.19 TCGA-WK-A8XO-01 12 49504411 49504411 G A LMBR1L 5'UTR 0.08 TCGA-WK-A8XO-01 12 51112505 51112505 T G DIP2B Silent p.A955A 0.19 TCGA-WK-A8XO-01 12 58152484 58152484 C G MARCH9 Nonsense_Mutation p.S282* 0.04 TCGA-WK-A8XO-01 12 69136392 69136392 C A NUP107 3'UTR 0.03 TCGA-WK-A8XO-01 12 69218174 69218174 G A MDM2 Silent p.E130E 0.03 TCGA-WK-A8XO-01 12 85421771 85421771 G A TSPAN19 Missense_Mutation p.S57F 0.52 tolerated(0.23) benign(0.007) TCGA-WK-A8XO-01 12 85441134 85441134 T C LRRIQ1 Silent p.T188T 0.04 TCGA-WK-A8XO-01 12 88465700 88465700 C T CEP290 Missense_Mutation p.A1905T 0.04 benign(0.003) TCGA-WK-A8XO-01 13 109772771 109772771 T A MYO16 Missense_Mutation p.D1142E 0.18 tolerated(0.23) benign(0.071) TCGA-WK-A8XO-01 13 76381810 76381810 T C LMO7 Missense_Mutation p.F231S 0.13 deleterious(0) probably_damaging(0.999) TCGA-WK-A8XO-01 14 24648067 24648067 A G REC8 Missense_Mutation p.E382G 0.14 tolerated(0.36) benign(0.083) TCGA-WK-A8XO-01 14 68117433 68117433 G A ARG2 Silent p.G287G 0.40 TCGA-WK-A8XO-01 14 80328258 80328258 A G NRXN3 Missense_Mutation p.K1046R 0.40 deleterious(0.02) benign(0.001) TCGA-WK-A8XO-01 16 28513296 28513296 C T IL27 Splice_Site p.X154_splice 0.12 TCGA-WK-A8XO-01 17 38434896 38434896 G T WIPF2 3'UTR 0.18 TCGA-WK-A8XO-01 17 4787752 4787752 G A MINK1 Missense_Mutation p.C134Y 0.21 deleterious(0) possibly_damaging(0.868) TCGA-WK-A8XO-01 19 20296806 20296806 C G ZNF486 Silent p.V56V 0.16 TCGA-WK-A8XO-01 19 20296824 20296824 C T ZNF486 Silent p.I62I 0.12 TCGA-WK-A8XO-01 19 20296831 20296831 C T ZNF486 Silent p.L65L 0.13 TCGA-WK-A8XO-01 19 41271139 41271139 C T SNRPA 3'UTR 0.14 TCGA-WK-A8XO-01 19 53643945 53643946 - T ZNF347 Frame_Shift_Ins p.N713Kfs*8 0.08 TCGA-WK-A8XO-01 19 8193949 8193949 G A FBN3 Silent p.P753P 0.38 TCGA-WK-A8XO-01 1 109855104 109855104 A T SORT1 3'UTR 0.12 TCGA-WK-A8XO-01 1 216246595 216246595 C T USH2A Missense_Mutation p.V1874I 0.29 benign(0.021) TCGA-WK-A8XO-01 1 24086203 24086203 C T TCEB3 3'UTR 0.22 TCGA-WK-A8XO-01 22 22989254 22989254 C T GGTLC2 Silent p.S69S 0.13 TCGA-WK-A8XO-01 2 9564130 9564130 G T CPSF3 Intron 0.22 TCGA-WK-A8XO-01 3 113377201 113377201 C T KIAA2018 Missense_Mutation p.E1110K 0.42 probably_damaging(0.997) TCGA-WK-A8XO-01 4 110792029 110792029 G T LRIT3 3'UTR 0.22 TCGA-WK-A8XO-01 4 6374262 6374262 C T PPP2R2C Missense_Mutation p.D205N 0.37 tolerated(0.4) benign(0.013) TCGA-WK-A8XO-01 4 70596224 70596224 C T SULT1B1 Missense_Mutation p.R258H 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-WK-A8XO-01 4 71255546 71255546 C A SMR3B Missense_Mutation p.P74Q 0.37 unknown(0) TCGA-WK-A8XO-01 4 8079400 8079400 G A ABLIM2 Silent p.I210I 0.14 TCGA-WK-A8XO-01 5 136957631 136957631 C T KLHL3 3'UTR 0.22 TCGA-WK-A8XO-01 5 140202596 140202596 G A PCDHA5 Silent p.L412L 0.34 TCGA-WK-A8XO-01 5 14465697 14465697 C T TRIO Missense_Mutation p.P1904L 0.10 benign(0.049) TCGA-WK-A8XO-01 5 19473754 19473754 G A CDH18 Missense_Mutation p.R652W 0.30 deleterious(0) probably_damaging(0.938) TCGA-WK-A8XO-01 5 41160304 41160304 C T C6 Missense_Mutation p.V542M 0.09 deleterious(0) possibly_damaging(0.764) TCGA-WK-A8XO-01 5 79968152 79968152 A T MSH3 Silent p.V294V 0.32 TCGA-WK-A8XO-01 5 95236679 95236679 A T ELL2 Missense_Mutation p.L283M 0.10 deleterious(0) probably_damaging(0.998) TCGA-WK-A8XO-01 6 90406215 90406215 A T MDN1 Missense_Mutation p.W3083R 0.21 benign(0.274) TCGA-WK-A8XO-01 7 42950004 42950004 T A C7orf25 Missense_Mutation p.I224F 0.32 tolerated(0.08) benign(0.317) TCGA-WK-A8XO-01 7 48318153 48318153 G T ABCA13 Silent p.T2454T 0.18 TCGA-WK-A8XO-01 8 130777930 130777930 C T GSDMC Missense_Mutation p.D172N 0.44 deleterious(0) benign(0.031) TCGA-WK-A8XO-01 8 53535426 53535426 C T RB1CC1 3'UTR 0.25 TCGA-WK-A8XO-01 8 88885852 88885852 C T DCAF4L2 Silent p.P116P 0.10 TCGA-WK-A8XO-01 9 139877860 139877860 T A LCNL1 5'UTR 0.54 TCGA-WK-A8XO-01 9 35737819 35737819 C A GBA2 Missense_Mutation p.D811Y 0.15 deleterious(0) probably_damaging(1) TCGA-WK-A8XO-01 X 107417804 107417804 C A COL4A6 Missense_Mutation p.A1003S 0.28 benign(0.349) TCGA-WK-A8XO-01 X 49963378 49963378 C T AKAP4 Missense_Mutation p.R18H 0.11 tolerated(1) benign(0) TCGA-WK-A8XO-01 X 67283813 67283813 C A OPHN1 Missense_Mutation p.G681W 0.21 tolerated(0.05) possibly_damaging(0.604) TCGA-WK-A8XQ-01 10 104497506 104497506 A G SFXN2 Missense_Mutation p.N319S 0.49 deleterious(0) probably_damaging(0.999) TCGA-WK-A8XQ-01 10 22048139 22048139 C T DNAJC1 Missense_Mutation p.R519H 0.41 deleterious(0) probably_damaging(1) TCGA-WK-A8XQ-01 10 81276125 81276125 A C EIF5AL1 3'UTR 0.71 TCGA-WK-A8XQ-01 10 99434959 99434959 C T PI4K2A 3'UTR 0.59 TCGA-WK-A8XQ-01 11 7817816 7817816 C T OR5P2 Missense_Mutation p.R225H 0.47 tolerated(0.41) benign(0.021) TCGA-WK-A8XQ-01 12 6184682 6184682 G A VWF Silent p.T231T 0.43 TCGA-WK-A8XQ-01 14 59730250 59730250 C T DAAM1 Nonsense_Mutation p.R19* 0.08 TCGA-WK-A8XQ-01 15 20657785 20657785 A T HERC2P3 RNA 0.31 TCGA-WK-A8XQ-01 15 83297194 83297194 G C CPEB1 Intron 0.71 TCGA-WK-A8XQ-01 16 53302010 53302010 A G CHD9 Silent p.G1563G 0.60 TCGA-WK-A8XQ-01 16 70010714 70010714 C A PDXDC2P Intron 0.18 TCGA-WK-A8XQ-01 17 1782517 1782517 T A RPA1 Nonsense_Mutation p.Y256* 0.72 TCGA-WK-A8XQ-01 17 38146359 38146359 C G PSMD3 Missense_Mutation p.A297G 0.43 deleterious(0.01) possibly_damaging(0.452) TCGA-WK-A8XQ-01 17 38935802 38935802 T C KRT27 Silent p.K308K 0.43 TCGA-WK-A8XQ-01 17 42253986 42253986 G T ASB16 Intron 0.14 TCGA-WK-A8XQ-01 18 30093484 30093484 A T WBP11P1 RNA 0.43 TCGA-WK-A8XQ-01 18 34825066 34825066 G T CELF4 3'UTR 0.50 TCGA-WK-A8XQ-01 19 4171147 4171147 C T CREB3L3 Missense_Mutation p.S317L 0.50 deleterious(0.05) possibly_damaging(0.528) TCGA-WK-A8XQ-01 19 44891263 44891263 C A ZNF285 Missense_Mutation p.D382Y 0.48 deleterious(0.03) possibly_damaging(0.815) TCGA-WK-A8XQ-01 1 19984152 19984152 G A MINOS1-NBL1 3'UTR 0.39 TCGA-WK-A8XQ-01 1 29639084 29639084 C T PTPRU Silent p.H1041H 0.06 TCGA-WK-A8XQ-01 1 33359548 33359548 G A HPCA 3'UTR 0.55 TCGA-WK-A8XQ-01 1 36636667 36636667 C G MAP7D1 Missense_Mutation p.P48A 0.51 probably_damaging(0.997) TCGA-WK-A8XQ-01 1 39835666 39835717 TTAGTCTGGCAAGTAACAAAACTGCTTCATTGACAGAGAGAAAGATGCATCA - MACF1 Splice_Site p.X2251_splice 0.49 TCGA-WK-A8XQ-01 22 50892973 50892973 C T SBF1 Missense_Mutation p.A1671T 0.08 tolerated(0.46) benign(0.004) TCGA-WK-A8XQ-01 2 63283301 63283301 T A OTX1 Silent p.G305G 0.47 TCGA-WK-A8XQ-01 3 48309726 48309726 A G ZNF589 Missense_Mutation p.N182S 0.42 tolerated(0.68) possibly_damaging(0.636) TCGA-WK-A8XQ-01 3 49708917 49708917 T C BSN 3'UTR 0.05 TCGA-WK-A8XQ-01 3 57203415 57203415 G C IL17RD 5'Flank 0.45 TCGA-WK-A8XQ-01 4 68708322 68708322 A T TMPRSS11D Missense_Mutation p.S91T 0.16 deleterious(0.05) probably_damaging(0.999) TCGA-WK-A8XQ-01 4 70079967 70079967 C A UGT2B11 Missense_Mutation p.E158D 0.44 tolerated(0.25) probably_damaging(0.977) TCGA-WK-A8XQ-01 5 90106396 90106396 G A GPR98 Missense_Mutation p.V5107I 0.46 benign(0.003) TCGA-WK-A8XQ-01 6 72955528 72955528 C A RIMS1 Silent p.R698R 0.38 TCGA-WK-A8XQ-01 7 150174717 150174717 C G GIMAP8 Missense_Mutation p.A616G 0.04 tolerated(0.34) benign(0.012) TCGA-WK-A8XQ-01 7 75958930 75958930 G A YWHAG Silent p.D236D 0.51 TCGA-WK-A8XQ-01 9 135202975 135202975 C A SETX Missense_Mutation p.R1337I 0.46 deleterious(0) possibly_damaging(0.62) TCGA-WK-A8XQ-01 9 93374456 93374456 A T DIRAS2 3'UTR 0.44 TCGA-WK-A8XQ-01 X 105451169 105451169 T C MUM1L1 Missense_Mutation p.W582R 1.00 deleterious(0) probably_damaging(0.999) TCGA-WK-A8XQ-01 X 14038512 14038512 G T GEMIN8 Missense_Mutation p.P53T 0.21 tolerated(0.07) possibly_damaging(0.818) TCGA-WK-A8XQ-01 X 152157709 152157709 A G PNMA5 3'UTR 0.67 TCGA-WK-A8XS-01 10 135278189 135278189 C T SPRN Intron 0.47 TCGA-WK-A8XS-01 10 21414843 21414843 C T C10orf113 Missense_Mutation p.G126D 0.86 deleterious(0) probably_damaging(0.969) TCGA-WK-A8XS-01 10 75529234 75529234 G A SEC24C Missense_Mutation p.A852T 0.08 deleterious(0.03) possibly_damaging(0.762) TCGA-WK-A8XS-01 10 89720855 89720859 TACTT - PTEN Frame_Shift_Del p.Y336Ffs*5 0.88 TCGA-WK-A8XS-01 11 113604439 113604439 C T ZW10 Missense_Mutation p.A773T 0.91 tolerated(0.12) benign(0.049) TCGA-WK-A8XS-01 11 118966079 118966079 C T H2AFX Missense_Mutation p.G9D 0.14 deleterious_low_confidence(0.02) unknown(0) TCGA-WK-A8XS-01 11 47183083 47183083 G T C11orf49 Missense_Mutation p.R303L 0.28 deleterious_low_confidence(0.02) probably_damaging(0.953) TCGA-WK-A8XS-01 11 48328655 48328655 A G OR4S1 Missense_Mutation p.N294S 0.71 tolerated(0.13) benign(0.007) TCGA-WK-A8XS-01 11 5289754 5289754 G A HBE1 Missense_Mutation p.A130V 0.08 deleterious(0.04) benign(0.225) TCGA-WK-A8XS-01 11 71943350 71943350 A T INPPL1 Missense_Mutation p.H561L 0.86 deleterious(0.03) probably_damaging(0.992) TCGA-WK-A8XS-01 12 102302067 102302067 C T DRAM1 Missense_Mutation p.P149L 0.40 deleterious(0) probably_damaging(1) TCGA-WK-A8XS-01 12 22354351 22354351 G T ST8SIA1 3'UTR 0.18 TCGA-WK-A8XS-01 12 25378704 25378704 T C KRAS Silent p.E98E 0.11 TCGA-WK-A8XS-01 12 26572013 26572013 A G ITPR2 Missense_Mutation p.L2360P 0.11 deleterious(0) probably_damaging(0.977) TCGA-WK-A8XS-01 12 57883288 57883288 C G MARS Missense_Mutation p.L121V 0.60 tolerated(0.19) possibly_damaging(0.598) TCGA-WK-A8XS-01 13 53418605 53418605 G A PCDH8 3'UTR 0.71 TCGA-WK-A8XS-01 13 95131426 95131426 G C DCT Silent p.V28V 0.17 TCGA-WK-A8XS-01 14 63784386 63784386 C A GPHB5 RNA 0.26 TCGA-WK-A8XS-01 15 26866636 26866636 T A GABRB3 Missense_Mutation p.R96W 0.09 deleterious(0) probably_damaging(1) TCGA-WK-A8XS-01 15 40660151 40660151 C T DISP2 Missense_Mutation p.P613L 0.18 deleterious(0.02) benign(0.197) TCGA-WK-A8XS-01 15 41248140 41248140 C A CHAC1 3'UTR 0.08 TCGA-WK-A8XS-01 15 65551069 65551069 C G PARP16 3'UTR 0.22 TCGA-WK-A8XS-01 15 74889073 74889073 T C ARID3B 3'UTR 0.10 TCGA-WK-A8XS-01 15 86822903 86822903 C T AGBL1 Silent p.G657G 0.51 TCGA-WK-A8XS-01 16 12009681 12009681 C A GSPT1 5'UTR 0.52 TCGA-WK-A8XS-01 16 2812100 2812100 G C SRRM2 Missense_Mutation p.R524T 0.22 unknown(0) TCGA-WK-A8XS-01 16 47697636 47697636 A C PHKB Missense_Mutation p.Q776P 0.09 tolerated(0.24) benign(0) TCGA-WK-A8XS-01 17 11872736 11872736 C G DNAH9 Nonsense_Mutation p.Y4451* 0.06 TCGA-WK-A8XS-01 17 27436916 27436916 G T MYO18A Silent p.R1097R 0.54 TCGA-WK-A8XS-01 17 39262506 39262506 A G KRTAP4-9 3'UTR 0.26 TCGA-WK-A8XS-01 19 11303728 11303729 - C KANK2 Frame_Shift_Ins p.A343Gfs*30 0.10 TCGA-WK-A8XS-01 19 4099304 4099304 C T MAP2K2 Missense_Mutation p.A272T 0.38 tolerated(0.32) benign(0.013) TCGA-WK-A8XS-01 19 49573848 49573848 T A KCNA7 Silent p.R281R 0.56 TCGA-WK-A8XS-01 1 116242775 116242775 T C CASQ2 3'UTR 0.48 TCGA-WK-A8XS-01 1 159799923 159799923 T A SLAMF8 Missense_Mutation p.V103E 0.21 tolerated(0.11) benign(0.194) TCGA-WK-A8XS-01 1 178269251 178269251 T G RASAL2 Missense_Mutation p.L152R 0.39 tolerated_low_confidence(0.05) possibly_damaging(0.809) TCGA-WK-A8XS-01 1 207648318 207648318 T C CR2 Missense_Mutation p.S825P 0.09 tolerated(0.17) benign(0.017) TCGA-WK-A8XS-01 1 247835974 247835974 A G OR13G1 Missense_Mutation p.C124R 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-WK-A8XS-01 20 3765146 3765146 C T CENPB 3'UTR 0.11 TCGA-WK-A8XS-01 20 56137779 56137779 G A PCK1 Missense_Mutation p.S145N 0.10 deleterious(0.01) possibly_damaging(0.488) TCGA-WK-A8XS-01 20 60318791 60318791 C T CDH4 Silent p.D114D 0.60 TCGA-WK-A8XS-01 22 42334973 42334973 C G CENPM 3'UTR 0.26 TCGA-WK-A8XS-01 2 166201197 166201197 G A SCN2A Missense_Mutation p.G899S 0.05 deleterious(0) probably_damaging(0.966) TCGA-WK-A8XS-01 2 26536280 26536280 C T GPR113 Missense_Mutation p.D480N 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-WK-A8XS-01 2 89544468 89544468 A G IGKV2-30 Silent p.S52S 0.23 TCGA-WK-A8XS-01 3 15709882 15709882 G A ANKRD28 3'UTR 0.23 TCGA-WK-A8XS-01 3 27453211 27453211 T C SLC4A7 Missense_Mutation p.N554S 0.12 tolerated(0.07) probably_damaging(0.995) TCGA-WK-A8XS-01 3 44286048 44286048 C T TOPAZ1 Silent p.L684L 0.10 TCGA-WK-A8XS-01 3 49203712 49203712 G A CCDC71 5'UTR 0.20 TCGA-WK-A8XS-01 3 53925935 53925935 G A SELK 5'UTR 0.58 TCGA-WK-A8XS-01 3 88188800 88188800 T A ZNF654 Missense_Mutation p.F114I 0.11 tolerated(0.43) benign(0.002) TCGA-WK-A8XS-01 5 171766855 171766855 C T SH3PXD2B Silent p.P418P 0.44 TCGA-WK-A8XS-01 6 12933874 12933874 T C PHACTR1 Missense_Mutation p.L87P 0.08 deleterious_low_confidence(0) benign(0.038) TCGA-WK-A8XS-01 6 30154038 30154038 G A TRIM26 Missense_Mutation p.T412M 0.85 tolerated(0.14) unknown(0) TCGA-WK-A8XS-01 6 66205307 66205307 C T EYS 5'UTR 0.95 TCGA-WK-A8XS-01 6 76599937 76599937 A C MYO6 Missense_Mutation p.E941A 0.38 deleterious(0.02) benign(0.043) TCGA-WK-A8XS-01 7 105142968 105142968 G C PUS7 Missense_Mutation p.A210G 0.20 tolerated(0.08) benign(0.027) TCGA-WK-A8XS-01 7 113518500 113518500 T A PPP1R3A Missense_Mutation p.R883W 0.52 deleterious(0.03) benign(0.379) TCGA-WK-A8XS-01 7 128520456 128520456 G A KCP RNA 0.24 TCGA-WK-A8XS-01 7 141315307 141315307 C T AGK Silent p.L154L 0.45 TCGA-WK-A8XS-01 7 148494904 148494904 G C CUL1 Missense_Mutation p.D634H 0.54 deleterious(0.02) benign(0.276) TCGA-WK-A8XS-01 7 41729122 41729122 T G INHBA 3'UTR 0.41 TCGA-WK-A8XS-01 8 74464052 74464052 G C STAU2 Intron 0.57 TCGA-WK-A8XS-01 8 87679208 87679208 T C CNGB3 Missense_Mutation p.Y266C 0.54 tolerated(0.74) benign(0) TCGA-WK-A8XS-01 9 104086318 104086318 G A LPPR1 Silent p.A319A 0.18 TCGA-WK-A8XS-01 9 131744924 131744924 G A NUP188 Missense_Mutation p.S538N 0.55 tolerated(0.05) possibly_damaging(0.816) TCGA-WK-A8XS-01 9 134183431 134183431 C T PPAPDC3 Silent p.A191A 0.21 TCGA-WK-A8XS-01 9 32785983 32785983 A G TMEM215 3'UTR 0.44 TCGA-WK-A8XS-01 9 32786147 32786147 C T TMEM215 3'UTR 0.14 TCGA-WK-A8XS-01 X 133527620 133527620 T A PHF6 Missense_Mutation p.H110Q 0.45 tolerated(0.63) benign(0.009) TCGA-WK-A8XS-01 X 148561675 148561675 G A IDS 3'UTR 0.42 TCGA-WK-A8XS-01 X 152226127 152226127 G C PNMA3 Missense_Mutation p.V239L 0.48 deleterious(0.01) probably_damaging(0.962) TCGA-WK-A8XS-01 X 48382093 48382093 C G EBP 5'UTR 0.23 TCGA-WK-A8XT-01 11 2798237 2798237 G T KCNQ1 Missense_Mutation p.K569N 0.49 deleterious(0) probably_damaging(0.984) TCGA-WK-A8XT-01 11 76507673 76507673 A G TSKU Missense_Mutation p.H338R 0.52 tolerated(0.43) benign(0.079) TCGA-WK-A8XT-01 12 109921780 109921780 T C UBE3B Silent p.D92D 0.21 TCGA-WK-A8XT-01 12 14538308 14538308 G T ATF7IP Intron 0.40 TCGA-WK-A8XT-01 12 31944230 31944230 A T H3F3C 3'UTR 0.08 TCGA-WK-A8XT-01 12 56726749 56726749 C T PAN2 Missense_Mutation p.V44M 0.50 tolerated_low_confidence(0.08) benign(0.174) TCGA-WK-A8XT-01 12 95604141 95604141 G A FGD6 Missense_Mutation p.P307S 0.52 tolerated_low_confidence(0.27) benign(0.019) TCGA-WK-A8XT-01 14 105414679 105414679 G C AHNAK2 Missense_Mutation p.P2370R 0.46 benign(0.002) TCGA-WK-A8XT-01 14 59835718 59835718 A T DAAM1 3'UTR 0.43 TCGA-WK-A8XT-01 14 64010052 64010052 C T PPP2R5E 5'UTR 0.29 TCGA-WK-A8XT-01 14 72190515 72190515 C G SIPA1L1 Missense_Mutation p.P1475A 0.35 tolerated(0.34) probably_damaging(0.98) TCGA-WK-A8XT-01 14 95030338 95030338 C T SERPINA4 Silent p.Y173Y 0.37 TCGA-WK-A8XT-01 15 77908078 77908078 G A LINGO1 Silent p.C57C 0.11 TCGA-WK-A8XT-01 16 2415783 2415783 G C ABCA17P RNA 0.52 TCGA-WK-A8XT-01 17 10357193 10357193 C G MYH4 Missense_Mutation p.A901P 0.37 deleterious(0.01) benign(0.025) TCGA-WK-A8XT-01 17 1516506 1516506 T A SLC43A2 Missense_Mutation p.T162S 0.39 deleterious(0) benign(0.108) TCGA-WK-A8XT-01 17 2599458 2599458 C G CLUH Missense_Mutation p.G757R 0.47 tolerated(0.07) benign(0.012) TCGA-WK-A8XT-01 17 39296439 39296439 G A KRTAP4-6 Nonsense_Mutation p.Q101* 0.06 TCGA-WK-A8XT-01 17 41008501 41008501 G A AOC3 Silent p.L742L 0.46 TCGA-WK-A8XT-01 17 7287395 7287395 C G TNK1 Missense_Mutation p.A230G 0.44 deleterious(0) probably_damaging(0.97) TCGA-WK-A8XT-01 17 79083085 79083085 G T BAIAP2 Intron 0.49 TCGA-WK-A8XT-01 18 44030349 44030349 C T RNF165 Missense_Mutation p.R236W 0.25 deleterious(0) probably_damaging(0.999) TCGA-WK-A8XT-01 19 10561315 10561315 G T PDE4A Missense_Mutation p.K219N 0.41 tolerated(0.15) benign(0.072) TCGA-WK-A8XT-01 19 16860069 16860069 A C NWD1 Silent p.R206R 0.44 TCGA-WK-A8XT-01 19 23541628 23541628 T C ZNF91 3'UTR 0.54 TCGA-WK-A8XT-01 19 46137656 46137656 C A EML2 Missense_Mutation p.A286S 0.45 deleterious(0.01) probably_damaging(0.945) TCGA-WK-A8XT-01 1 108138947 108138947 T C VAV3 Missense_Mutation p.Y746C 0.08 deleterious(0) probably_damaging(1) TCGA-WK-A8XT-01 1 147119311 147119311 C G ACP6 Missense_Mutation p.A401P 0.49 deleterious(0.03) possibly_damaging(0.62) TCGA-WK-A8XT-01 1 150551644 150551644 C A MCL1 Silent p.S121S 0.50 TCGA-WK-A8XT-01 1 161022453 161022453 G C ARHGAP30 Missense_Mutation p.R267G 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-WK-A8XT-01 1 184767242 184767242 T C FAM129A Missense_Mutation p.H546R 0.50 tolerated(0.26) benign(0.096) TCGA-WK-A8XT-01 20 10625797 10625797 T G JAG1 Missense_Mutation p.N741H 0.49 tolerated(0.1) benign(0.066) TCGA-WK-A8XT-01 20 44444191 44444191 C A UBE2C Missense_Mutation p.D76E 0.46 tolerated(0.06) benign(0.019) TCGA-WK-A8XT-01 21 38528967 38528967 C A TTC3 Silent p.A917A 0.43 TCGA-WK-A8XT-01 22 26688313 26688313 C T SEZ6L Intron 0.64 TCGA-WK-A8XT-01 22 42779495 42779495 C - NFAM1 3'UTR 0.40 TCGA-WK-A8XT-01 22 48021185 48021185 A G LINC00898 RNA 0.47 TCGA-WK-A8XT-01 2 12858577 12858577 G C TRIB2 Silent p.P48P 0.72 TCGA-WK-A8XT-01 2 215632266 215632266 T G BARD1 Missense_Mutation p.K503T 0.44 deleterious(0) possibly_damaging(0.519) TCGA-WK-A8XT-01 2 74442386 74442386 A C MTHFD2 3'UTR 0.41 TCGA-WK-A8XT-01 2 75157532 75157532 C G AC104135.3 RNA 0.48 TCGA-WK-A8XT-01 3 111710511 111710521 ACTTCTTGTTT - ABHD10 Frame_Shift_Del p.L289Hfs*3 0.38 TCGA-WK-A8XT-01 3 125725891 125725891 C G SLC41A3 Intron 0.49 TCGA-WK-A8XT-01 3 125876260 125876260 A T ALDH1L1 Missense_Mutation p.C162S 0.50 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-WK-A8XT-01 3 169530222 169530222 C A LRRC34 Missense_Mutation p.G39C 0.50 tolerated_low_confidence(0.09) benign(0.366) TCGA-WK-A8XT-01 3 39307455 39307455 G C CX3CR1 Silent p.V214V 0.77 TCGA-WK-A8XT-01 3 52804795 52804795 C T NEK4 5'UTR 1.00 TCGA-WK-A8XT-01 3 9719070 9719070 A G MTMR14 Missense_Mutation p.Q274R 0.82 deleterious(0) possibly_damaging(0.885) TCGA-WK-A8XT-01 4 3432573 3432573 G T RGS12 Missense_Mutation p.E1335D 0.40 tolerated(0.69) benign(0.01) TCGA-WK-A8XT-01 4 39851192 39851192 T C PDS5A Missense_Mutation p.N1056S 0.49 tolerated(0.31) benign(0.007) TCGA-WK-A8XT-01 4 46042359 46042359 A G GABRG1 3'UTR 0.71 TCGA-WK-A8XT-01 4 85758160 85758160 C T WDFY3 Silent p.V166V 0.52 TCGA-WK-A8XT-01 5 176825332 176825332 G T SLC34A1 3'UTR 0.52 TCGA-WK-A8XT-01 5 31323070 31323070 C G CDH6 Silent p.T676T 0.50 TCGA-WK-A8XT-01 5 32087892 32087892 G - PDZD2 Frame_Shift_Del p.D1448Tfs*57 0.38 TCGA-WK-A8XT-01 5 37834785 37834785 G C GDNF Silent p.L55L 0.49 TCGA-WK-A8XT-01 5 7717343 7717343 G T ADCY2 Missense_Mutation p.A566S 0.41 tolerated(1) benign(0.003) TCGA-WK-A8XT-01 6 107391548 107391548 C A BEND3 Missense_Mutation p.D283Y 0.47 deleterious(0.01) probably_damaging(0.954) TCGA-WK-A8XT-01 6 132649242 132649242 G A MOXD1 Missense_Mutation p.P286S 0.13 deleterious(0) probably_damaging(1) TCGA-WK-A8XT-01 6 29643198 29643198 T C ZFP57 Missense_Mutation p.E106G 0.48 tolerated(0.17) benign(0.047) TCGA-WK-A8XT-01 6 38862564 38862564 A G DNAH8 Missense_Mutation p.K2674E 0.35 benign(0.008) TCGA-WK-A8XT-01 6 51701242 51701242 G A PKHD1 Silent p.V2711V 0.33 TCGA-WK-A8XT-01 6 75862069 75862069 C A COL12A1 Missense_Mutation p.G1232V 0.43 possibly_damaging(0.884) TCGA-WK-A8XT-01 7 138758715 138758715 G A ZC3HAV1 Nonsense_Mutation p.R587* 0.05 TCGA-WK-A8XT-01 7 20420428 20420428 G - ITGB8 Frame_Shift_Del p.A259Pfs*24 0.28 TCGA-WK-A8XT-01 7 42007256 42007256 A G GLI3 Missense_Mutation p.F790S 0.51 tolerated(0.13) benign(0.111) TCGA-WK-A8XT-01 7 72892896 72892896 T C BAZ1B Missense_Mutation p.M299V 0.44 tolerated(0.35) benign(0.05) TCGA-WK-A8XT-01 7 81381428 81381428 T A HGF Intron 0.37 TCGA-WK-A8XT-01 8 11280805 11280805 T A FAM167A 3'UTR 0.43 TCGA-WK-A8XT-01 8 21769858 21769858 C T DOK2 Missense_Mutation p.S76N 0.40 tolerated(0.14) benign(0.005) TCGA-WK-A8XT-01 8 77618128 77618128 G C ZFHX4 Missense_Mutation p.G602A 0.38 possibly_damaging(0.899) TCGA-WK-A8XT-01 9 114695301 114695301 A G UGCG 3'UTR 0.46 TCGA-WK-A8XT-01 9 140075277 140075277 C T ANAPC2 Missense_Mutation p.D525N 0.40 deleterious(0.05) possibly_damaging(0.627) TCGA-WK-A8XT-01 9 4625444 4625444 G A SPATA6L Silent p.A126A 0.51 TCGA-WK-A8XT-01 X 108887384 108887384 C G ACSL4 Missense_Mutation p.K670N 0.50 deleterious(0.02) benign(0.426) TCGA-WK-A8XT-01 X 148797280 148797280 C T MAGEA11 Missense_Mutation p.A70V 0.42 deleterious_low_confidence(0.03) benign(0.009) TCGA-WK-A8XT-01 X 153224895 153224895 T C HCFC1 Missense_Mutation p.T498A 0.59 tolerated(0.58) benign(0.132) TCGA-WK-A8XX-01 10 124177438 124177438 A G PLEKHA1 Missense_Mutation p.Y212C 0.54 deleterious(0) probably_damaging(0.999) TCGA-WK-A8XX-01 10 52390321 52390321 T C RP11-50E11.3 RNA 0.22 TCGA-WK-A8XX-01 11 68380889 68380889 A G PPP6R3 3'UTR 0.36 TCGA-WK-A8XX-01 11 76823688 76823688 C T CAPN5 Silent p.Y117Y 0.12 TCGA-WK-A8XX-01 12 117904962 117904962 A G KSR2 3'UTR 0.20 TCGA-WK-A8XX-01 12 19436609 19436609 C T PLEKHA5 Missense_Mutation p.S570L 0.14 deleterious(0) benign(0.386) TCGA-WK-A8XX-01 12 89982432 89982432 T C ATP2B1 3'UTR 0.11 TCGA-WK-A8XX-01 14 106331417 106331417 A C IGHJ2 Missense_Mutation p.V15G 0.11 probably_damaging(1) TCGA-WK-A8XX-01 14 55480246 55480246 T A WDHD1 Missense_Mutation p.K49M 0.47 deleterious(0.01) probably_damaging(0.94) TCGA-WK-A8XX-01 15 68468089 68468089 T - PIAS1 Frame_Shift_Del p.Y429Tfs*8 0.24 TCGA-WK-A8XX-01 16 24583338 24583338 T A RBBP6 Missense_Mutation p.S1651T 0.38 deleterious_low_confidence(0) benign(0.184) TCGA-WK-A8XX-01 16 30794309 30794309 C T ZNF629 Missense_Mutation p.R447H 0.14 deleterious(0.05) probably_damaging(0.999) TCGA-WK-A8XX-01 16 67314176 67314176 G T PLEKHG4 Missense_Mutation p.D77Y 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.494) TCGA-WK-A8XX-01 16 69729107 69729124 GGCCAACCACAAAACGAG - NFAT5 In_Frame_Del p.Q1498_P1503del 0.25 TCGA-WK-A8XX-01 16 7568226 7568226 C A RBFOX1 Missense_Mutation p.N55K 0.53 deleterious(0) probably_damaging(0.999) TCGA-WK-A8XX-01 17 10436721 10436721 A G MYH2 Silent p.G774G 0.45 TCGA-WK-A8XX-01 17 1631292 1631292 G A WDR81 Silent p.A1013A 0.50 TCGA-WK-A8XX-01 17 61681893 61681893 G T TACO1 Splice_Site p.X94_splice 0.27 TCGA-WK-A8XX-01 17 7577505 7577505 T A TP53 Missense_Mutation p.D259V 0.70 deleterious(0.01) probably_damaging(0.991) TCGA-WK-A8XX-01 17 78086455 78086455 C T GAA Silent p.G611G 0.42 TCGA-WK-A8XX-01 18 77170842 77170842 C T NFATC1 Silent p.Y176Y 0.12 TCGA-WK-A8XX-01 19 11569017 11569017 G A ELAVL3 Missense_Mutation p.P191L 0.15 tolerated(0.06) benign(0.318) TCGA-WK-A8XX-01 19 11943740 11943740 C T ZNF440 Silent p.P583P 0.18 TCGA-WK-A8XX-01 19 2115549 2115549 A T AP3D1 Missense_Mutation p.L713M 0.32 deleterious(0) probably_damaging(1) TCGA-WK-A8XX-01 19 31769390 31769390 G A TSHZ3 Silent p.L437L 0.28 TCGA-WK-A8XX-01 19 45477820 45477820 G T CLPTM1 Missense_Mutation p.C145F 0.30 tolerated(0.1) benign(0.066) TCGA-WK-A8XX-01 19 53518525 53518525 G A ERVV-1 Silent p.E394E 0.17 TCGA-WK-A8XX-01 19 7964446 7964446 G A LRRC8E Missense_Mutation p.V347M 0.13 deleterious(0.02) probably_damaging(0.994) TCGA-WK-A8XX-01 1 233121872 233121872 C T PCNXL2 Missense_Mutation p.G2069D 0.27 deleterious(0) probably_damaging(0.998) TCGA-WK-A8XX-01 1 39798401 39798401 G A MACF1 Intron 0.50 TCGA-WK-A8XX-01 1 43650876 43650876 C T WDR65 Missense_Mutation p.A273V 0.15 tolerated(0.26) benign(0.009) TCGA-WK-A8XX-01 1 52744179 52744179 A G ZFYVE9 Missense_Mutation p.E921G 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-WK-A8XX-01 20 42302464 42302464 G T MYBL2 Silent p.L13L 0.20 TCGA-WK-A8XX-01 22 37524543 37524543 C T IL2RB Missense_Mutation p.A417T 0.42 tolerated(0.07) benign(0.039) TCGA-WK-A8XX-01 22 44543775 44543775 C T PARVB Silent p.A282A 0.25 TCGA-WK-A8XX-01 2 109368152 109368152 A G RANBP2 Missense_Mutation p.K542E 0.15 deleterious(0.01) benign(0.044) TCGA-WK-A8XX-01 2 216252945 216252945 T C FN1 Silent p.R1444R 0.13 TCGA-WK-A8XX-01 2 217332668 217332668 G T SMARCAL1 Nonsense_Mutation p.E715* 0.50 TCGA-WK-A8XX-01 2 219447713 219447713 C A RQCD1 Missense_Mutation p.P75Q 0.20 deleterious(0.03) benign(0.25) TCGA-WK-A8XX-01 2 234106746 234106746 C T INPP5D Missense_Mutation p.P888L 0.20 tolerated(0.2) benign(0.008) TCGA-WK-A8XX-01 2 33809590 33809590 G C FAM98A 3'UTR 0.50 TCGA-WK-A8XX-01 3 105294139 105294139 T C ALCAM 3'UTR 0.17 TCGA-WK-A8XX-01 3 1371493 1371493 G C CNTN6 Missense_Mutation p.S413T 0.11 tolerated(0.41) benign(0.005) TCGA-WK-A8XX-01 3 143710217 143710217 G A C3orf58 3'UTR 0.11 TCGA-WK-A8XX-01 3 424203 424203 G T CHL1 Missense_Mutation p.W675C 0.20 deleterious(0) probably_damaging(1) TCGA-WK-A8XX-01 4 110925730 110925730 C T EGF Silent p.R1081R 0.49 TCGA-WK-A8XX-01 4 155489556 155489556 G A FGB Missense_Mutation p.G248R 0.45 deleterious(0) probably_damaging(0.995) TCGA-WK-A8XX-01 4 187171526 187171526 A T KLKB1 Missense_Mutation p.Y243F 0.21 tolerated(1) possibly_damaging(0.765) TCGA-WK-A8XX-01 4 41987671 41987671 C G DCAF4L1 3'UTR 0.24 TCGA-WK-A8XX-01 4 493032 493032 G A PIGG 5'UTR 0.50 TCGA-WK-A8XX-01 5 140433279 140433279 C A PCDHB1 Missense_Mutation p.Q742K 0.56 deleterious(0) benign(0.013) TCGA-WK-A8XX-01 5 140532324 140532324 T C PCDHB6 3'UTR 0.23 TCGA-WK-A8XX-01 5 159992826 159992826 G T ATP10B Missense_Mutation p.D1340E 0.57 tolerated(1) benign(0.008) TCGA-WK-A8XX-01 5 177683352 177683352 A T COL23A1 Splice_Site p.X294_splice 0.30 TCGA-WK-A8XX-01 6 148872856 148872856 G C SASH1 3'UTR 0.65 TCGA-WK-A8XX-01 6 32086879 32086879 G T ATF6B Silent p.R336R 0.22 TCGA-WK-A8XX-01 6 88854252 88854252 C A CNR1 Missense_Mutation p.A248S 0.58 tolerated(1) benign(0.336) TCGA-WK-A8XX-01 7 100344302 100344302 T C ZAN Missense_Mutation p.L303P 0.62 probably_damaging(0.999) TCGA-WK-A8XX-01 7 116397813 116397813 C T MET Missense_Mutation p.T696I 0.25 tolerated(0.2) possibly_damaging(0.742) TCGA-WK-A8XX-01 7 129311328 129311328 C T NRF1 Missense_Mutation p.H95Y 0.17 tolerated(0.05) probably_damaging(0.948) TCGA-WK-A8XX-01 7 150174802 150174802 T G GIMAP8 Missense_Mutation p.I644M 0.31 tolerated(0.47) benign(0.009) TCGA-WK-A8XX-01 7 150325305 150325305 G C GIMAP6 Silent p.L127L 0.47 TCGA-WK-A8XX-01 7 4722449 4722449 G T FOXK1 Silent p.V170V 0.47 TCGA-WK-A8XX-01 7 72420559 72420559 G A POM121 3'UTR 0.16 TCGA-WK-A8XX-01 8 143994116 143994116 G A CYP11B2 Silent p.L410L 0.15 TCGA-WK-A8XX-01 8 145135038 145135038 G C EXOSC4 Missense_Mutation p.D122H 0.16 deleterious(0) probably_damaging(1) TCGA-WK-A8XX-01 8 1626652 1626652 A C DLGAP2 Missense_Mutation p.D774A 0.19 tolerated(0.26) benign(0.101) TCGA-WK-A8XX-01 8 3076833 3076833 A C CSMD1 Missense_Mutation p.L1539R 0.29 probably_damaging(0.986) TCGA-WK-A8XX-01 8 48866457 48866457 G A PRKDC Silent p.L177L 0.59 TCGA-WK-A8XX-01 9 104189924 104189924 C T ALDOB Missense_Mutation p.G127E 0.18 deleterious(0) probably_damaging(0.979) TCGA-WK-A8XX-01 9 115337138 115337138 A T KIAA1958 Missense_Mutation p.I260F 0.56 tolerated(0.09) benign(0.005) TCGA-WK-A8XX-01 9 139760677 139760677 G A EDF1 Silent p.L12L 0.47 TCGA-WK-A8XX-01 X 107437801 107437801 A T COL4A6 Missense_Mutation p.L323Q 0.11 unknown(0) TCGA-WK-A8XX-01 Y 21877620 21877620 C T KDM5D Missense_Mutation p.R740Q 0.22 deleterious(0) probably_damaging(0.984) TCGA-WK-A8XY-01 10 101458602 101458602 C T ENTPD7 Missense_Mutation p.A441V 0.11 tolerated(0.19) benign(0.099) TCGA-WK-A8XY-01 10 16866920 16866920 C T CUBN 3'UTR 0.12 TCGA-WK-A8XY-01 10 7844282 7844282 C A ATP5C1 Nonsense_Mutation p.Y229* 0.38 TCGA-WK-A8XY-01 10 89653790 89653790 C - PTEN Frame_Shift_Del p.P30Qfs*24 0.50 TCGA-WK-A8XY-01 11 102647402 102647402 G C MMP10 Missense_Mutation p.T243R 0.77 tolerated(0.39) benign(0.047) TCGA-WK-A8XY-01 11 134250425 134250425 C T B3GAT1 3'Flank 0.95 TCGA-WK-A8XY-01 12 101017941 101017941 C T GAS2L3 Missense_Mutation p.A453V 0.19 tolerated(0.34) benign(0.001) TCGA-WK-A8XY-01 12 1599543 1599543 G T ERC1 3'UTR 0.56 TCGA-WK-A8XY-01 12 54333237 54333237 C T HOXC13 Nonsense_Mutation p.Q183* 0.79 TCGA-WK-A8XY-01 14 105055465 105055465 G T C14orf180 3'UTR 0.25 TCGA-WK-A8XY-01 14 24683307 24683307 G A NEDD8-MDP1 Nonsense_Mutation p.Q169* 0.41 TCGA-WK-A8XY-01 15 43814555 43814555 C T MAP1A Missense_Mutation p.T295M 0.11 probably_damaging(0.999) TCGA-WK-A8XY-01 15 44046097 44046097 A G PDIA3 Silent p.A81A 0.12 TCGA-WK-A8XY-01 15 83932303 83932303 A T BNC1 Missense_Mutation p.M567K 0.58 tolerated(0.89) benign(0.021) TCGA-WK-A8XY-01 16 2138255 2138255 T C TSC2 Missense_Mutation p.S1730P 0.05 deleterious(0.01) possibly_damaging(0.891) TCGA-WK-A8XY-01 16 628913 628913 T G PIGQ Missense_Mutation p.Y400D 0.44 deleterious(0) probably_damaging(0.982) TCGA-WK-A8XY-01 16 67580400 67580400 C T FAM65A 3'UTR 0.74 TCGA-WK-A8XY-01 16 67978160 67978160 G T SLC12A4 3'UTR 0.25 TCGA-WK-A8XY-01 16 68260269 68260269 G A NFATC3 Silent p.G1041G 1.00 TCGA-WK-A8XY-01 16 88808709 88808709 G A PIEZO1 Silent p.S94S 0.76 TCGA-WK-A8XY-01 17 4804026 4804026 G A C17orf107 3'UTR 0.85 TCGA-WK-A8XY-01 17 57288309 57288309 G A SMG8 Silent p.R299R 0.40 TCGA-WK-A8XY-01 17 74004699 74004699 G A EVPL Silent p.D1529D 0.46 TCGA-WK-A8XY-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.94 TCGA-WK-A8XY-01 17 77807835 77807835 A G CBX4 Missense_Mutation p.F536L 0.51 tolerated(0.05) possibly_damaging(0.827) TCGA-WK-A8XY-01 18 14542640 14542640 C A POTEC Missense_Mutation p.R169M 0.43 deleterious(0) probably_damaging(0.98) TCGA-WK-A8XY-01 18 2946496 2946496 G C LPIN2 Intron 0.52 TCGA-WK-A8XY-01 18 58039762 58039762 G T MC4R 5'UTR 0.44 TCGA-WK-A8XY-01 18 9283764 9283764 A G ANKRD12 3'UTR 0.10 TCGA-WK-A8XY-01 19 41812936 41812936 C G HNRNPUL1 3'UTR 0.55 TCGA-WK-A8XY-01 19 41884369 41884369 C G TMEM91 Missense_Mutation p.P52R 0.44 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-WK-A8XY-01 19 42584298 42584298 C G ZNF574 Missense_Mutation p.L514V 0.53 deleterious(0.02) benign(0.02) TCGA-WK-A8XY-01 19 42818998 42818998 C T TMEM145 Missense_Mutation p.R139C 0.12 deleterious(0) probably_damaging(0.927) TCGA-WK-A8XY-01 19 50303321 50303321 G C AP2A1 Missense_Mutation p.V457L 0.45 deleterious(0.01) possibly_damaging(0.871) TCGA-WK-A8XY-01 19 59059900 59059900 C T TRIM28 Missense_Mutation p.P422S 0.09 tolerated(0.12) benign(0.003) TCGA-WK-A8XY-01 19 9076289 9076289 A T MUC16 Silent p.T3719T 0.43 TCGA-WK-A8XY-01 1 13839703 13839703 C T LRRC38 Missense_Mutation p.R129K 0.38 tolerated(0.88) benign(0.012) TCGA-WK-A8XY-01 1 150917627 150917627 G C SETDB1 Intron 0.36 TCGA-WK-A8XY-01 1 167787437 167787437 C G ADCY10 Missense_Mutation p.R1452T 0.42 deleterious(0) probably_damaging(0.99) TCGA-WK-A8XY-01 1 169446394 169446394 G A SLC19A2 Missense_Mutation p.P269L 0.44 tolerated(0.32) benign(0.002) TCGA-WK-A8XY-01 1 174247778 174247778 T C RABGAP1L Missense_Mutation p.V395A 0.08 tolerated(0.08) benign(0.327) TCGA-WK-A8XY-01 1 179887358 179887358 G - TOR1AIP1 Frame_Shift_Del p.G580Afs*7 0.75 TCGA-WK-A8XY-01 1 237997088 237997088 T C RYR2 3'UTR 0.14 TCGA-WK-A8XY-01 1 26524785 26524785 C T CATSPER4 Silent p.S229S 0.41 TCGA-WK-A8XY-01 1 27679961 27679961 C A SYTL1 Missense_Mutation p.R511S 0.45 deleterious(0) probably_damaging(1) TCGA-WK-A8XY-01 1 70588783 70588783 G C LRRC7 3'Flank 0.11 TCGA-WK-A8XY-01 21 44835702 44835715 TGAGCCATGAGCCA - SIK1 3'UTR 0.24 TCGA-WK-A8XY-01 22 24659976 24659976 C T POM121L9P RNA 0.17 TCGA-WK-A8XY-01 22 38881705 38881705 T A DDX17 3'UTR 0.42 TCGA-WK-A8XY-01 2 114356033 114356033 G A WASH2P RNA 0.08 TCGA-WK-A8XY-01 2 127447866 127447866 A G GYPC Missense_Mutation p.M29V 0.31 tolerated(0.13) benign(0.014) TCGA-WK-A8XY-01 2 170042037 170042037 C T LRP2 Missense_Mutation p.S3274N 0.50 benign(0.434) TCGA-WK-A8XY-01 2 179595897 179595897 A G TTN Missense_Mutation p.I5832T 0.06 TCGA-WK-A8XY-01 2 208631288 208631288 A T FZD5 3'UTR 0.07 TCGA-WK-A8XY-01 2 219315103 219315103 C T USP37 3'UTR 0.42 TCGA-WK-A8XY-01 3 51273843 51273843 T A DOCK3 Nonsense_Mutation p.L662* 0.41 TCGA-WK-A8XY-01 3 68781610 68781610 C A FAM19A4 3'UTR 0.32 TCGA-WK-A8XY-01 4 165891188 165891188 T A TRIM61 5'UTR 0.25 TCGA-WK-A8XY-01 4 22517284 22517284 C A GPR125 Missense_Mutation p.G42C 0.11 tolerated(0.1) unknown(0) TCGA-WK-A8XY-01 4 22517294 22517294 C T GPR125 Silent p.A38A 0.12 TCGA-WK-A8XY-01 4 8229906 8229906 G C SH3TC1 Missense_Mutation p.V829L 0.89 tolerated(0.1) benign(0.05) TCGA-WK-A8XY-01 4 870905 870905 G T GAK Silent p.S649S 0.44 TCGA-WK-A8XY-01 4 871534 871534 G T GAK Silent p.I575I 0.41 TCGA-WK-A8XY-01 5 127523606 127523606 T A SLC12A2 3'UTR 0.47 TCGA-WK-A8XY-01 5 59982797 59982797 G T DEPDC1B Missense_Mutation p.H102Q 0.45 tolerated(1) benign(0.013) TCGA-WK-A8XY-01 5 64748637 64748637 C A ADAMTS6 Missense_Mutation p.S247I 0.39 deleterious(0.01) benign(0.38) TCGA-WK-A8XY-01 5 94877519 94877519 C T TTC37 Missense_Mutation p.S109N 0.36 tolerated(0.15) probably_damaging(0.96) TCGA-WK-A8XY-01 6 136596817 136596817 T A BCLAF1 Missense_Mutation p.R569W 0.24 tolerated(0.06) possibly_damaging(0.827) TCGA-WK-A8XY-01 6 155451514 155451514 G T TIAM2 Missense_Mutation p.W386L 0.18 deleterious(0.02) possibly_damaging(0.878) TCGA-WK-A8XY-01 6 6266904 6266904 C G F13A1 Missense_Mutation p.C153S 1.00 tolerated(0.07) probably_damaging(0.999) TCGA-WK-A8XY-01 6 99283560 99283560 G A POU3F2 Missense_Mutation p.E271K 0.71 deleterious(0) probably_damaging(0.996) TCGA-WK-A8XY-01 7 141942360 141942360 A C MOXD2P RNA 0.27 TCGA-WK-A8XY-01 7 2853988 2853988 G C GNA12 Intron 0.06 TCGA-WK-A8XY-01 8 24772312 24772312 G A NEFM Missense_Mutation p.G336S 0.50 tolerated(0.27) unknown(0) TCGA-WK-A8XY-01 9 125611809 125611809 A T RC3H2 3'UTR 0.59 TCGA-WK-A8XY-01 9 127220913 127220913 G C GPR144 Silent p.V568V 0.38 TCGA-WK-A8XY-01 9 131001728 131001728 T C DNM1 Missense_Mutation p.M476T 0.42 tolerated(0.5) benign(0.001) TCGA-WK-A8XY-01 9 131386737 131386737 G T SPTAN1 Missense_Mutation p.W1988L 0.20 deleterious(0) probably_damaging(0.998) TCGA-WK-A8XY-01 9 73376522 73376522 C A TRPM3 Nonsense_Mutation p.E423* 0.11 TCGA-WK-A8XY-01 X 133903809 133903809 T A FAM122B 3'UTR 0.49 TCGA-WK-A8XY-01 X 134166783 134166783 G C FAM127A 3'UTR 0.51 TCGA-WK-A8XY-01 X 134655020 134655020 T C DDX26B Missense_Mutation p.F35L 0.55 deleterious(0) benign(0.408) TCGA-WK-A8XY-01 X 23410954 23410954 T A PTCHD1 Missense_Mutation p.F440Y 0.56 deleterious(0.04) possibly_damaging(0.581) TCGA-WK-A8XY-01 X 69724298 69724298 G T DLG3 3'UTR 0.37 TCGA-WK-A8XZ-01 10 37414856 37414856 C T ANKRD30A 5'UTR 0.10 TCGA-WK-A8XZ-01 10 91497490 91497490 G A KIF20B Silent p.L924L 0.10 TCGA-WK-A8XZ-01 11 1080568 1080568 G C MUC2 Missense_Mutation p.G404R 0.69 probably_damaging(0.999) TCGA-WK-A8XZ-01 11 114182922 114182922 T C NNMT Missense_Mutation p.L173P 0.07 deleterious(0.02) benign(0.125) TCGA-WK-A8XZ-01 11 7110313 7110313 G A RBMXL2 5'UTR 0.45 TCGA-WK-A8XZ-01 11 73990432 73990432 C T P4HA3 Splice_Site p.X392_splice 0.33 TCGA-WK-A8XZ-01 12 58019389 58019389 G T SLC26A10 Missense_Mutation p.R518L 0.39 tolerated(0.09) benign(0.201) TCGA-WK-A8XZ-01 12 75441989 75441989 C T KCNC2 Missense_Mutation p.C575Y 0.38 deleterious_low_confidence(0.01) benign(0.188) TCGA-WK-A8XZ-01 13 28875892 28875892 C G FLT1 3'UTR 0.45 TCGA-WK-A8XZ-01 13 48955526 48955550 AAACATTTAGAACGATGTGAACATC - RB1 Frame_Shift_Del p.K548Efs*55 0.54 TCGA-WK-A8XZ-01 13 73345952 73345952 G T DIS3 Missense_Mutation p.T529N 0.20 deleterious(0) probably_damaging(0.994) TCGA-WK-A8XZ-01 14 21360336 21360336 T G RNASE3 3'UTR 0.35 TCGA-WK-A8XZ-01 14 23897840 23897840 C T MYH7 Missense_Mutation p.E483K 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-WK-A8XZ-01 15 101425559 101425559 G T ALDH1A3 Missense_Mutation p.V63L 0.33 deleterious(0.01) benign(0.189) TCGA-WK-A8XZ-01 16 2026301 2026301 C T TBL3 Silent p.T426T 0.13 TCGA-WK-A8XZ-01 16 81078304 81078304 A T ATMIN Missense_Mutation p.D734V 0.11 deleterious(0) probably_damaging(0.924) TCGA-WK-A8XZ-01 17 15531786 15531786 C G TRIM16 3'UTR 0.11 TCGA-WK-A8XZ-01 17 15645348 15645348 C T TBC1D26 Intron 0.08 TCGA-WK-A8XZ-01 17 15645784 15645784 C T TBC1D26 3'UTR 0.10 TCGA-WK-A8XZ-01 17 7578536 7578536 T C TP53 Missense_Mutation p.K132E 0.85 deleterious(0) probably_damaging(1) TCGA-WK-A8XZ-01 17 78404027 78404027 G A ENDOV Intron 0.13 TCGA-WK-A8XZ-01 17 7984275 7984275 C A ALOX12B Missense_Mutation p.G152C 0.71 deleterious(0) probably_damaging(1) TCGA-WK-A8XZ-01 19 10671700 10671700 G A KRI1 Silent p.N220N 0.19 TCGA-WK-A8XZ-01 19 14875250 14875250 C T EMR2 Missense_Mutation p.G360D 0.09 tolerated(0.25) probably_damaging(0.926) TCGA-WK-A8XZ-01 19 45655411 45655411 C T NKPD1 Missense_Mutation p.A762T 0.18 tolerated(0.9) benign(0.024) TCGA-WK-A8XZ-01 19 4817152 4817152 C A TICAM1 Missense_Mutation p.R413L 0.27 deleterious(0) possibly_damaging(0.883) TCGA-WK-A8XZ-01 19 51835768 51835768 T C VSIG10L 3'UTR 0.06 TCGA-WK-A8XZ-01 19 56249610 56249610 C A NLRP9 Missense_Mutation p.W44L 0.66 deleterious(0) probably_damaging(0.968) TCGA-WK-A8XZ-01 1 155220123 155220123 G A FAM189B Missense_Mutation p.P485L 0.16 tolerated(0.79) benign(0.002) TCGA-WK-A8XZ-01 1 155448260 155448260 G A ASH1L Silent p.P1467P 0.29 TCGA-WK-A8XZ-01 1 226418976 226418976 G A LIN9 3'UTR 0.09 TCGA-WK-A8XZ-01 1 233270836 233270836 A G PCNXL2 Missense_Mutation p.F1254L 0.07 tolerated(0.19) benign(0.025) TCGA-WK-A8XZ-01 1 24779930 24779930 C T NIPAL3 Silent p.L191L 0.32 TCGA-WK-A8XZ-01 1 39888445 39888445 G C MACF1 Missense_Mutation p.C3279S 0.29 probably_damaging(0.999) TCGA-WK-A8XZ-01 22 31678391 31678391 C T PIK3IP1 3'UTR 0.33 TCGA-WK-A8XZ-01 2 131453966 131453966 C - FAR2P3 RNA 0.14 TCGA-WK-A8XZ-01 2 170003437 170003437 G T LRP2 Missense_Mutation p.P4208H 0.22 probably_damaging(0.982) TCGA-WK-A8XZ-01 3 14487301 14487301 C G SLC6A6 Silent p.G102G 0.53 TCGA-WK-A8XZ-01 3 154898814 154898814 G C MME 3'UTR 0.24 TCGA-WK-A8XZ-01 3 160945124 160945124 T C NMD3 Missense_Mutation p.L90P 0.49 deleterious(0) probably_damaging(0.975) TCGA-WK-A8XZ-01 3 66429627 66429627 A T LRIG1 3'UTR 0.22 TCGA-WK-A8XZ-01 3 77696143 77696143 C T ROBO2 3'UTR 0.30 TCGA-WK-A8XZ-01 4 170482982 170482982 C T NEK1 Splice_Site p.X380_splice 0.30 TCGA-WK-A8XZ-01 5 138842227 138842227 C T ECSCR Missense_Mutation p.C10Y 0.48 tolerated(0.13) possibly_damaging(0.588) TCGA-WK-A8XZ-01 6 128134106 128134106 G A THEMIS Silent p.H560H 0.29 TCGA-WK-A8XZ-01 6 135239814 135239814 G - ALDH8A1 Frame_Shift_Del p.F402Lfs*7 0.32 TCGA-WK-A8XZ-01 6 7365794 7365794 A G CAGE1 Silent p.D700D 0.45 TCGA-WK-A8XZ-01 7 108204958 108204958 T C THAP5 Missense_Mutation p.I289V 0.36 tolerated(0.41) benign(0) TCGA-WK-A8XZ-01 7 140244243 140244243 C G DENND2A Intron 0.33 TCGA-WK-A8XZ-01 7 153750014 153750014 G A DPP6 Missense_Mutation p.G37S 0.07 tolerated_low_confidence(0.33) benign(0.002) TCGA-WK-A8XZ-01 7 5632738 5632738 C A FSCN1 Missense_Mutation p.S57R 0.07 tolerated(0.08) possibly_damaging(0.89) TCGA-WK-A8XZ-01 8 144333368 144333368 C T ZFP41 3'UTR 0.40 TCGA-WK-A8XZ-01 8 144995719 144995719 C G PLEC Missense_Mutation p.G2894A 0.38 benign(0.391) TCGA-WK-A8XZ-01 8 27468062 27468062 C A CLU Silent p.V9V 0.40 TCGA-WK-A8XZ-01 8 27468086 27468086 C A CLU Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) benign(0.107) TCGA-WK-A8XZ-01 8 39370106 39370106 T C ADAM3A RNA 0.33 TCGA-WK-A8XZ-01 8 53535159 53535159 G C RB1CC1 3'UTR 0.41 TCGA-WK-A8XZ-01 X 140996392 140996392 G A MAGEC1 Missense_Mutation p.E1068K 0.46 deleterious(0.02) unknown(0) TCGA-WK-A8XZ-01 X 72347614 72347614 G A NAP1L6 Silent p.D36D 0.45 TCGA-WK-A8Y0-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.67 deleterious(0.02) probably_damaging(0.989) TCGA-WK-A8Y0-01 11 63953631 63953631 C T STIP1 5'UTR 0.08 TCGA-WK-A8Y0-01 11 6735924 6735924 T A GVINP1 RNA 0.59 TCGA-WK-A8Y0-01 11 67399835 67399835 G A TBX10 Silent p.S274S 0.18 TCGA-WK-A8Y0-01 11 89385760 89385760 C A FOLH1B RNA 0.62 TCGA-WK-A8Y0-01 12 101368611 101368611 C A ANO4 Intron 0.07 TCGA-WK-A8Y0-01 12 103699894 103699894 G C C12orf42 Missense_Mutation p.N163K 0.16 tolerated(0.24) benign(0.08) TCGA-WK-A8Y0-01 12 120518816 120518816 T C CCDC64 Silent p.I478I 0.13 TCGA-WK-A8Y0-01 12 56365351 56365351 C T CDK2 Missense_Mutation p.A280V 0.07 deleterious(0) probably_damaging(0.931) TCGA-WK-A8Y0-01 12 5908718 5908718 G A ANO2 Missense_Mutation p.A333V 0.19 deleterious(0) probably_damaging(0.999) TCGA-WK-A8Y0-01 12 68374 68374 C T RP11-598F7.1 RNA 0.05 TCGA-WK-A8Y0-01 13 49027153 49027156 AAAC - RB1 Frame_Shift_Del p.K574Nfs*36 0.61 TCGA-WK-A8Y0-01 14 21424381 21424381 C A RNASE2 Missense_Mutation p.P151T 0.07 deleterious(0.01) probably_damaging(0.995) TCGA-WK-A8Y0-01 14 39703236 39703236 A G MIA2 5'UTR 0.35 TCGA-WK-A8Y0-01 14 44976143 44976143 G C FSCB Missense_Mutation p.H16Q 0.23 tolerated(0.23) benign(0.135) TCGA-WK-A8Y0-01 14 59931123 59931123 G A GPR135 Silent p.G274G 0.29 TCGA-WK-A8Y0-01 14 60951636 60951636 G A C14orf39 Silent p.D23D 0.04 TCGA-WK-A8Y0-01 14 93537319 93537319 G T ITPK1 Intron 0.37 TCGA-WK-A8Y0-01 15 35530195 35530195 G A ANP32AP1 RNA 0.25 TCGA-WK-A8Y0-01 16 81323975 81323975 C T BCMO1 Silent p.V479V 0.11 TCGA-WK-A8Y0-01 16 81323977 81323977 C T BCMO1 Missense_Mutation p.S480F 0.12 deleterious(0) probably_damaging(0.913) TCGA-WK-A8Y0-01 16 89920700 89920700 C A SPIRE2 Missense_Mutation p.Q218K 0.06 tolerated(1) benign(0.005) TCGA-WK-A8Y0-01 17 31324480 31324480 C G SPACA3 Missense_Mutation p.L174V 0.40 tolerated(0.1) possibly_damaging(0.527) TCGA-WK-A8Y0-01 17 38290706 38290706 C T MSL1 3'Flank 0.23 TCGA-WK-A8Y0-01 17 40048663 40048663 C T ACLY Missense_Mutation p.E547K 0.50 deleterious(0.01) possibly_damaging(0.72) TCGA-WK-A8Y0-01 17 65073603 65073603 T A HELZ 3'UTR 0.12 TCGA-WK-A8Y0-01 17 6946879 6946879 C A SLC16A11 Missense_Mutation p.R9M 0.27 tolerated_low_confidence(0.11) benign(0.001) TCGA-WK-A8Y0-01 17 7574025 7574025 C - TP53 Frame_Shift_Del p.R335Vfs*10 0.40 TCGA-WK-A8Y0-01 17 78282903 78282903 A G RNF213 Missense_Mutation p.K863E 0.68 benign(0.002) TCGA-WK-A8Y0-01 19 1112841 1112847 CTTCTCC - SBNO2 Frame_Shift_Del p.R783Sfs*5 0.25 TCGA-WK-A8Y0-01 19 14752409 14752409 G A EMR3 Missense_Mutation p.T357I 0.61 deleterious(0.02) benign(0.246) TCGA-WK-A8Y0-01 19 54327234 54327234 C A NLRP12 Silent p.G65G 0.14 TCGA-WK-A8Y0-01 19 9225933 9225933 G T OR7G1 Nonsense_Mutation p.C169* 0.43 TCGA-WK-A8Y0-01 1 176564098 176564098 A T PAPPA2 Missense_Mutation p.D453V 0.17 tolerated(0.3) benign(0.009) TCGA-WK-A8Y0-01 1 186302508 186302508 G A TPR Missense_Mutation p.P1734L 0.84 possibly_damaging(0.713) TCGA-WK-A8Y0-01 1 213188755 213188755 T - ANGEL2 Intron 0.43 TCGA-WK-A8Y0-01 1 216251697 216251697 A C USH2A Missense_Mutation p.L1769R 0.68 probably_damaging(0.999) TCGA-WK-A8Y0-01 1 35580503 35580503 C T ZMYM1 Silent p.I1024I 0.36 TCGA-WK-A8Y0-01 1 55567345 55567345 G A USP24 Missense_Mutation p.S1686L 0.43 tolerated(0.1) possibly_damaging(0.764) TCGA-WK-A8Y0-01 20 57829203 57829203 C A ZNF831 Missense_Mutation p.T1480N 0.29 deleterious(0.04) possibly_damaging(0.583) TCGA-WK-A8Y0-01 21 26803767 26803767 C T LINC00158 RNA 0.15 TCGA-WK-A8Y0-01 21 33318455 33318455 T C HUNK Missense_Mutation p.Y240H 0.28 deleterious(0) probably_damaging(1) TCGA-WK-A8Y0-01 22 16287907 16287907 G T POTEH 5'UTR 0.34 TCGA-WK-A8Y0-01 22 22348852 22348852 G T PRAMENP RNA 0.26 TCGA-WK-A8Y0-01 2 101014550 101014550 C A CHST10 Nonsense_Mutation p.E83* 0.28 TCGA-WK-A8Y0-01 2 112722787 112722787 C T MERTK Silent p.V259V 0.31 TCGA-WK-A8Y0-01 2 113414763 113414763 C T SLC20A1 Silent p.F241F 0.46 TCGA-WK-A8Y0-01 2 136029367 136029367 C G ZRANB3 Missense_Mutation p.A393P 0.64 deleterious(0) probably_damaging(1) TCGA-WK-A8Y0-01 2 170148813 170148813 A T LRP2 Missense_Mutation p.V240D 0.71 probably_damaging(0.981) TCGA-WK-A8Y0-01 2 47300982 47300982 G C TTC7A Missense_Mutation p.V833L 0.50 deleterious(0.05) benign(0.09) TCGA-WK-A8Y0-01 3 125850303 125850303 G A ALDH1L1 Missense_Mutation p.T526M 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-WK-A8Y0-01 3 48641757 48641757 T C UQCRC1 Missense_Mutation p.M179V 0.46 tolerated(0.09) benign(0.005) TCGA-WK-A8Y0-01 4 101946426 101946426 T G PPP3CA 3'UTR 0.28 TCGA-WK-A8Y0-01 4 155243560 155243560 G A DCHS2 Missense_Mutation p.P912S 0.37 tolerated(0.6) possibly_damaging(0.581) TCGA-WK-A8Y0-01 4 187629482 187629482 G A FAT1 Silent p.Y500Y 0.38 TCGA-WK-A8Y0-01 4 2073789 2073789 C T POLN 3'UTR 0.09 TCGA-WK-A8Y0-01 5 137593567 137593567 G A GFRA3 Silent p.Y182Y 0.62 TCGA-WK-A8Y0-01 6 148852780 148852780 G A SASH1 Missense_Mutation p.S516N 0.63 deleterious(0) probably_damaging(0.998) TCGA-WK-A8Y0-01 6 39507857 39507857 G A KIF6 Nonsense_Mutation p.R523* 0.17 TCGA-WK-A8Y0-01 7 142638486 142638486 C G KEL Missense_Mutation p.K684N 0.35 tolerated(0.35) benign(0.049) TCGA-WK-A8Y0-01 7 156476044 156476044 C A LMBR1 3'UTR 0.39 TCGA-WK-A8Y0-01 7 94992147 94992147 G A PON3 Silent p.V234V 0.14 TCGA-WK-A8Y0-01 7 98602905 98602905 C T TRRAP Silent p.L3549L 0.31 TCGA-WK-A8Y0-01 8 11619201 11619201 C T C8orf49 Silent p.L93L 0.47 TCGA-WK-A8Y0-01 8 37555344 37555344 C T ZNF703 Missense_Mutation p.P309S 0.15 tolerated(0.09) benign(0.298) TCGA-WK-A8Y0-01 9 123924170 123924170 A G CNTRL Missense_Mutation p.N1709S 0.25 benign(0.035) TCGA-WK-A8Y0-01 X 129215314 129215314 T C ELF4 5'UTR 0.39 TCGA-WK-A8Y0-01 X 149912877 149912877 T A MTMR1 Silent p.S498S 0.39 TCGA-WK-A8Y0-01 X 152106688 152106688 G A ZNF185 Missense_Mutation p.A429T 0.17 tolerated(1) benign(0.006) TCGA-WK-A8Y0-01 X 50350911 50350911 C T SHROOM4 Silent p.R1077R 0.14 TCGA-WK-A8Y0-01 X 76888728 76888728 T A ATRX Nonsense_Mutation p.K1701* 0.43 TCGA-WK-A8Y0-01 X 92965811 92965811 T C FAM133A 3'UTR 0.34 TCGA-WP-A9GB-01 10 16979734 16979734 C T CUBN Missense_Mutation p.G1928D 0.61 deleterious(0) probably_damaging(0.995) TCGA-WP-A9GB-01 10 18829574 18829575 AC - CACNB2 3'UTR 0.28 TCGA-WP-A9GB-01 10 24833379 24833379 C T KIAA1217 Missense_Mutation p.P1727L 0.26 deleterious(0.04) benign(0.017) TCGA-WP-A9GB-01 10 25464562 25464562 G A GPR158 Silent p.A71A 0.42 TCGA-WP-A9GB-01 10 5541395 5541395 C T CALML5 Missense_Mutation p.G3S 1.00 tolerated(0.09) benign(0.003) TCGA-WP-A9GB-01 10 70641836 70641836 C A STOX1 Missense_Mutation p.L145I 0.42 deleterious(0) probably_damaging(1) TCGA-WP-A9GB-01 10 93220291 93220291 C A HECTD2 Missense_Mutation p.P126T 0.21 deleterious(0.02) possibly_damaging(0.543) TCGA-WP-A9GB-01 11 108010820 108010820 A G ACAT1 Missense_Mutation p.K203R 0.39 deleterious(0.03) benign(0.026) TCGA-WP-A9GB-01 11 114452463 114452463 A G NXPE4 Silent p.S292S 0.27 TCGA-WP-A9GB-01 11 124180308 124180308 C A OR8D1 Missense_Mutation p.A119S 1.00 deleterious(0.02) possibly_damaging(0.632) TCGA-WP-A9GB-01 11 124670195 124670195 G C MSANTD2 Missense_Mutation p.P28A 0.15 tolerated_low_confidence(0.23) possibly_damaging(0.452) TCGA-WP-A9GB-01 11 130104003 130104003 A G ZBTB44 3'UTR 0.92 TCGA-WP-A9GB-01 11 18749796 18749796 C A PTPN5 3'UTR 0.44 TCGA-WP-A9GB-01 11 51412103 51412103 T G OR4A5 Missense_Mutation p.Q98P 0.35 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-WP-A9GB-01 11 56757027 56757027 C T OR5AK2 Silent p.V213V 0.42 TCGA-WP-A9GB-01 11 58956718 58956718 G A DTX4 Missense_Mutation p.V361I 0.36 tolerated(0.14) benign(0.1) TCGA-WP-A9GB-01 11 62297347 62297347 T A AHNAK Missense_Mutation p.K1514N 0.23 probably_damaging(0.999) TCGA-WP-A9GB-01 11 73008055 73008055 C G P2RY6 Missense_Mutation p.I164M 0.32 tolerated(0.16) benign(0.182) TCGA-WP-A9GB-01 12 102122971 102122971 C G SYCP3 Missense_Mutation p.K191N 0.30 deleterious(0.03) possibly_damaging(0.501) TCGA-WP-A9GB-01 12 105562075 105562078 TTTT - KIAA1033 3'UTR 0.44 TCGA-WP-A9GB-01 12 22089499 22089500 AG - ABCC9 Frame_Shift_Del p.L37Vfs*33 0.23 TCGA-WP-A9GB-01 12 48063978 48063978 A C RPAP3 Missense_Mutation p.S480A 0.24 tolerated(0.4) possibly_damaging(0.661) TCGA-WP-A9GB-01 12 50156676 50156676 A G TMBIM6 Silent p.K295K 0.35 TCGA-WP-A9GB-01 12 55421896 55421896 A T NEUROD4 3'UTR 0.24 TCGA-WP-A9GB-01 12 68618939 68618939 A C IL26 Missense_Mutation p.L118W 0.21 deleterious(0.04) benign(0.007) TCGA-WP-A9GB-01 12 89917838 89917840 AGG - GALNT4 In_Frame_Del p.P163del 0.44 TCGA-WP-A9GB-01 13 29933578 29933578 C A MTUS2 Missense_Mutation p.L1039I 0.31 deleterious(0.04) benign(0.219) TCGA-WP-A9GB-01 13 60566234 60566234 G A DIAPH3 Silent p.S404S 0.10 TCGA-WP-A9GB-01 14 101349306 101349306 A G RTL1 Missense_Mutation p.F607S 0.42 tolerated(0.09) benign(0.248) TCGA-WP-A9GB-01 14 106320523 106320523 C G IGHM Silent p.V429V 0.60 TCGA-WP-A9GB-01 14 22675875 22675875 C G TRAV34 Missense_Mutation p.L63V 0.43 tolerated(0.09) possibly_damaging(0.547) TCGA-WP-A9GB-01 14 23815660 23815661 CT - SLC22A17 3'UTR 0.27 TCGA-WP-A9GB-01 14 31917348 31917348 A G DTD2 Missense_Mutation p.L165S 0.20 deleterious(0) possibly_damaging(0.783) TCGA-WP-A9GB-01 14 35233923 35233923 C G BAZ1A Missense_Mutation p.E1256Q 0.62 tolerated_low_confidence(0.07) benign(0.143) TCGA-WP-A9GB-01 14 44974526 44974526 A T FSCB Silent p.A555A 0.61 TCGA-WP-A9GB-01 14 62567381 62567381 A G SYT16 Missense_Mutation p.K632E 0.33 tolerated(0.1) benign(0.18) TCGA-WP-A9GB-01 14 92958100 92958100 G T SLC24A4 Missense_Mutation p.M543I 0.17 tolerated(0.06) benign(0.036) TCGA-WP-A9GB-01 15 78893698 78893698 T C CHRNA3 Missense_Mutation p.D429G 0.29 tolerated(0.27) benign(0.006) TCGA-WP-A9GB-01 16 1545430 1545430 A T TELO2 Missense_Mutation p.Q140L 0.19 tolerated(0.63) benign(0.017) TCGA-WP-A9GB-01 16 18859200 18859200 G C SMG1 Missense_Mutation p.Q1927E 0.19 tolerated(0.17) benign(0.13) TCGA-WP-A9GB-01 16 2512469 2512469 G T C16orf59 Silent p.G268G 0.67 TCGA-WP-A9GB-01 16 30034664 30034664 G A C16orf92 5'UTR 0.22 TCGA-WP-A9GB-01 16 66811166 66811166 G C CCDC79 Missense_Mutation p.L309V 0.42 deleterious(0) possibly_damaging(0.529) TCGA-WP-A9GB-01 16 71009037 71009037 A T HYDIN Splice_Site p.X1591_splice 0.60 TCGA-WP-A9GB-01 16 74330744 74330744 G A PSMD7 5'UTR 0.10 TCGA-WP-A9GB-01 16 86614515 86614515 G C FOXL1 3'UTR 0.54 TCGA-WP-A9GB-01 16 88500498 88500498 A G ZNF469 Missense_Mutation p.K2179R 0.62 benign(0.145) TCGA-WP-A9GB-01 17 16285865 16285865 A G UBB Missense_Mutation p.K215R 0.05 tolerated(0.07) benign(0.027) TCGA-WP-A9GB-01 17 16735609 16735609 A G KRT16P2 RNA 0.14 TCGA-WP-A9GB-01 17 27956734 27956734 A G SSH2 3'UTR 0.36 TCGA-WP-A9GB-01 17 37934017 37934017 C T IKZF3 Missense_Mutation p.S238N 0.58 tolerated(0.17) benign(0.009) TCGA-WP-A9GB-01 17 45518000 45518000 C T EFCAB13 Nonsense_Mutation p.Q948* 0.50 TCGA-WP-A9GB-01 17 46673764 46673764 T C HOXB6 3'UTR 0.24 TCGA-WP-A9GB-01 17 57743601 57743601 A C CLTC Missense_Mutation p.Q594H 0.41 deleterious(0) probably_damaging(1) TCGA-WP-A9GB-01 17 59761175 59761175 T C BRIP1 Missense_Mutation p.K1078E 0.24 tolerated_low_confidence(0.19) benign(0.057) TCGA-WP-A9GB-01 17 62291465 62291465 A G TEX2 Missense_Mutation p.F38S 0.20 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-WP-A9GB-01 17 72733143 72733143 G A RAB37 5'UTR 0.31 TCGA-WP-A9GB-01 17 72939701 72939701 G T OTOP3 Missense_Mutation p.R229S 0.22 deleterious(0.02) possibly_damaging(0.628) TCGA-WP-A9GB-01 17 75208137 75208137 C G SEC14L1 Missense_Mutation p.P573A 0.39 tolerated(0.24) benign(0.009) TCGA-WP-A9GB-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 1.00 deleterious(0) probably_damaging(1) TCGA-WP-A9GB-01 17 76045614 76045614 A G TNRC6C Silent p.Q157Q 0.23 TCGA-WP-A9GB-01 17 76424543 76424543 C T DNAH17 Splice_Site p.X4211_splice 0.71 TCGA-WP-A9GB-01 17 77807255 77807255 A G CBX4 3'UTR 0.19 TCGA-WP-A9GB-01 18 23713893 23713893 C G PSMA8 5'UTR 0.21 TCGA-WP-A9GB-01 18 31158640 31158640 T C ASXL3 Silent p.A15A 0.17 TCGA-WP-A9GB-01 18 44555367 44555367 C T TCEB3C Missense_Mutation p.D283N 0.06 tolerated(0.4) benign(0.002) TCGA-WP-A9GB-01 18 67997417 67997417 A G SOCS6 3'UTR 0.19 TCGA-WP-A9GB-01 19 11346419 11346419 T A DOCK6 Silent p.G803G 0.24 TCGA-WP-A9GB-01 19 13259843 13259844 CT - STX10 Frame_Shift_Del p.E121Dfs*41 0.32 TCGA-WP-A9GB-01 19 14626062 14626062 C A DNAJB1 3'UTR 0.19 TCGA-WP-A9GB-01 19 18327583 18327583 G A PDE4C Nonsense_Mutation p.R485* 0.49 TCGA-WP-A9GB-01 19 1953888 1953888 G A CSNK1G2 Intron 0.40 TCGA-WP-A9GB-01 19 2944942 2944942 G A ZNF77 5'Flank 0.55 TCGA-WP-A9GB-01 19 35851202 35851202 C A FFAR3 3'UTR 0.10 TCGA-WP-A9GB-01 19 38378202 38378202 T C WDR87 Missense_Mutation p.M1998V 0.28 benign(0.002) TCGA-WP-A9GB-01 19 41599673 41599673 G A CYP2A13 Missense_Mutation p.E324K 0.54 tolerated(0.08) possibly_damaging(0.578) TCGA-WP-A9GB-01 19 56544095 56544095 A G NLRP5 Missense_Mutation p.K799E 0.20 deleterious(0) possibly_damaging(0.736) TCGA-WP-A9GB-01 19 5691405 5691405 G C RPL36 Missense_Mutation p.A57P 0.20 deleterious(0.03) possibly_damaging(0.569) TCGA-WP-A9GB-01 19 5707147 5707147 T G LONP1 Missense_Mutation p.K357T 0.28 deleterious(0.03) benign(0.261) TCGA-WP-A9GB-01 19 58361193 58361193 C A CTD-2583A14.10 Intron 0.33 TCGA-WP-A9GB-01 19 58967494 58967494 A T ZNF324B Nonsense_Mutation p.K395* 0.23 TCGA-WP-A9GB-01 19 58967495 58967495 A G ZNF324B Missense_Mutation p.K395R 0.22 tolerated(0.12) probably_damaging(0.999) TCGA-WP-A9GB-01 19 7114739 7114739 T G INSR 3'Flank 0.58 TCGA-WP-A9GB-01 19 7978783 7978784 TT - MAP2K7 3'UTR 0.09 TCGA-WP-A9GB-01 19 9578410 9578410 C G ZNF560 Missense_Mutation p.G405R 0.28 tolerated(0.15) benign(0.344) TCGA-WP-A9GB-01 1 120057126 120057126 T G HSD3B1 Missense_Mutation p.F327C 0.95 deleterious(0) probably_damaging(0.987) TCGA-WP-A9GB-01 1 1227001 1227001 C T SCNN1D 3'UTR 0.31 TCGA-WP-A9GB-01 1 145761266 145761266 T C PDZK1 Missense_Mutation p.L360P 0.16 tolerated(0.19) benign(0.005) TCGA-WP-A9GB-01 1 149856752 149856752 C G HIST2H2BE 3'UTR 0.12 TCGA-WP-A9GB-01 1 152382768 152382768 G C CRNN Missense_Mutation p.Q264E 0.38 deleterious(0.01) probably_damaging(0.916) TCGA-WP-A9GB-01 1 155447818 155447818 T - ASH1L Frame_Shift_Del p.R1615Efs*13 0.16 TCGA-WP-A9GB-01 1 165697256 165697256 G T TMCO1 3'UTR 0.21 TCGA-WP-A9GB-01 1 167082993 167082993 C A DUSP27 Missense_Mutation p.P53T 0.14 deleterious(0) probably_damaging(1) TCGA-WP-A9GB-01 1 170967558 170967558 G T MROH9 Intron 0.46 TCGA-WP-A9GB-01 1 178819447 178819447 T A ANGPTL1 3'UTR 0.17 TCGA-WP-A9GB-01 1 196694299 196694299 G T CFH Missense_Mutation p.R582L 0.50 deleterious(0.05) benign(0.001) TCGA-WP-A9GB-01 1 202702842 202702842 A T KDM5B Missense_Mutation p.F1199Y 0.27 deleterious(0.02) possibly_damaging(0.597) TCGA-WP-A9GB-01 1 205197803 205197803 G T TMCC2 Missense_Mutation p.E37D 0.19 tolerated_low_confidence(0.26) benign(0.004) TCGA-WP-A9GB-01 1 248264038 248264038 T A OR2L13 3'UTR 0.39 TCGA-WP-A9GB-01 1 248366777 248366777 G C OR2M3 Missense_Mutation p.M136I 0.27 deleterious(0.01) benign(0.082) TCGA-WP-A9GB-01 1 3301765 3301765 C T PRDM16 Missense_Mutation p.A163V 0.15 tolerated(0.16) benign(0.004) TCGA-WP-A9GB-01 1 34174865 34174865 A G CSMD2 Intron 0.30 TCGA-WP-A9GB-01 1 39800543 39800544 AG - MACF1 Intron 0.34 TCGA-WP-A9GB-01 1 42046979 42046979 A G HIVEP3 Missense_Mutation p.S1164P 0.20 benign(0.006) TCGA-WP-A9GB-01 1 42643221 42643221 C G FOXJ3 3'UTR 0.41 TCGA-WP-A9GB-01 1 44035396 44035396 T C PTPRF Missense_Mutation p.F172S 0.40 tolerated(0.08) probably_damaging(0.969) TCGA-WP-A9GB-01 1 46106026 46106026 T C GPBP1L1 Silent p.K200K 0.71 TCGA-WP-A9GB-01 1 54423865 54423865 C T LRRC42 Missense_Mutation p.R173W 0.23 deleterious(0.02) probably_damaging(0.983) TCGA-WP-A9GB-01 1 74540395 74540395 G A LRRIQ3 Missense_Mutation p.P316L 0.66 tolerated(0.1) benign(0.006) TCGA-WP-A9GB-01 1 86817831 86817831 G T ODF2L 3'UTR 0.17 TCGA-WP-A9GB-01 20 17602363 17602363 T C RRBP1 Missense_Mutation p.H666R 0.30 tolerated(0.06) benign(0) TCGA-WP-A9GB-01 20 23807102 23807102 G A CST2 Missense_Mutation p.R66C 0.24 deleterious(0.04) possibly_damaging(0.594) TCGA-WP-A9GB-01 20 32399398 32399398 T A CHMP4B Missense_Mutation p.F42I 0.27 deleterious(0.01) benign(0.403) TCGA-WP-A9GB-01 21 19726140 19726140 A T TMPRSS15 Missense_Mutation p.F307L 0.41 tolerated(0.32) possibly_damaging(0.601) TCGA-WP-A9GB-01 21 45953680 45953680 G A TSPEAR Nonsense_Mutation p.R144* 0.76 TCGA-WP-A9GB-01 21 47570376 47570376 C T FTCD Missense_Mutation p.V234M 0.65 deleterious(0) probably_damaging(0.998) TCGA-WP-A9GB-01 22 17073326 17073326 C A CCT8L2 Missense_Mutation p.A39S 0.22 deleterious(0.01) possibly_damaging(0.859) TCGA-WP-A9GB-01 22 19187282 19187282 T C CLTCL1 Missense_Mutation p.H1279R 0.18 deleterious(0.02) possibly_damaging(0.895) TCGA-WP-A9GB-01 22 37769292 37769292 G T ELFN2 Nonsense_Mutation p.Y761* 0.39 TCGA-WP-A9GB-01 22 49042466 49042466 C T FAM19A5 Missense_Mutation p.P57L 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-WP-A9GB-01 2 113940242 113940242 T A PSD4 Missense_Mutation p.V70E 0.48 deleterious_low_confidence(0.02) benign(0.403) TCGA-WP-A9GB-01 2 11765428 11765428 A G GREB1 Missense_Mutation p.I1432M 0.19 tolerated(0.14) benign(0.015) TCGA-WP-A9GB-01 2 159517119 159517119 A G PKP4 Intron 0.40 TCGA-WP-A9GB-01 2 219296835 219296835 G A VIL1 Missense_Mutation p.G424S 0.44 deleterious(0.01) probably_damaging(0.966) TCGA-WP-A9GB-01 2 219647127 219647127 T G CYP27A1 Silent p.V74V 0.35 TCGA-WP-A9GB-01 2 242166838 242166839 AG - HDLBP 3'UTR 0.47 TCGA-WP-A9GB-01 2 37505106 37505106 A T PRKD3 Missense_Mutation p.L400Q 0.63 deleterious(0) probably_damaging(0.998) TCGA-WP-A9GB-01 2 42558377 42558377 T C EML4 3'UTR 0.36 TCGA-WP-A9GB-01 2 48824720 48824720 G T STON1 3'UTR 0.25 TCGA-WP-A9GB-01 2 74320711 74320711 C T TET3 Missense_Mutation p.P927L 0.95 deleterious(0) probably_damaging(1) TCGA-WP-A9GB-01 3 108100264 108100264 T A MYH15 3'UTR 0.43 TCGA-WP-A9GB-01 3 111638036 111638036 G T PHLDB2 Missense_Mutation p.D613Y 0.45 deleterious(0) possibly_damaging(0.885) TCGA-WP-A9GB-01 3 122422740 122422740 A C PARP14 Missense_Mutation p.K1078T 0.21 tolerated(0.22) benign(0.005) TCGA-WP-A9GB-01 3 124457073 124457073 A G UMPS Silent p.K323K 0.38 TCGA-WP-A9GB-01 3 126708266 126708266 T A PLXNA1 Missense_Mutation p.F277Y 0.31 tolerated(0.07) probably_damaging(0.995) TCGA-WP-A9GB-01 3 128753020 128753020 A G EFCC1 Missense_Mutation p.T433A 0.28 tolerated(0.47) benign(0.019) TCGA-WP-A9GB-01 3 14106484 14106484 A T TPRXL 3'UTR 0.12 TCGA-WP-A9GB-01 3 142278275 142278275 A G ATR Missense_Mutation p.F517S 0.30 tolerated_low_confidence(0.45) benign(0.001) TCGA-WP-A9GB-01 3 179115513 179115513 T C MFN1 3'Flank 0.29 TCGA-WP-A9GB-01 3 184101126 184101126 G C CHRD Missense_Mutation p.D414H 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-WP-A9GB-01 3 187442793 187442793 C T BCL6 Missense_Mutation p.R638H 0.11 tolerated(0.49) probably_damaging(0.991) TCGA-WP-A9GB-01 3 197509989 197509989 C T FYTTD1 3'UTR 0.17 TCGA-WP-A9GB-01 3 24138605 24138605 C G LINC00691 RNA 0.30 TCGA-WP-A9GB-01 3 24162806 24162806 A T THRB 3'UTR 0.14 TCGA-WP-A9GB-01 3 24164567 24164567 A G THRB Silent p.S398S 0.10 TCGA-WP-A9GB-01 3 24164570 24164570 A G THRB Silent p.D397D 0.11 TCGA-WP-A9GB-01 3 30842399 30842399 C G GADL1 Missense_Mutation p.R411P 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-WP-A9GB-01 3 33318974 33318974 G C FBXL2 5'UTR 0.19 TCGA-WP-A9GB-01 3 47045620 47045620 C T NBEAL2 Missense_Mutation p.R1979W 0.31 deleterious(0) probably_damaging(1) TCGA-WP-A9GB-01 3 47618467 47618467 A T CSPG5 Nonsense_Mutation p.L350* 0.30 TCGA-WP-A9GB-01 3 49055208 49055209 CT - DALRD3 Frame_Shift_Del p.R185Sfs*12 0.23 TCGA-WP-A9GB-01 3 57130335 57130335 A G IL17RD 3'UTR 0.36 TCGA-WP-A9GB-01 4 119666191 119666191 A G SEC24D Missense_Mutation p.F578L 0.20 tolerated(0.21) benign(0.045) TCGA-WP-A9GB-01 4 1209885 1209885 C T CTBP1 Missense_Mutation p.R219H 0.47 deleterious(0) possibly_damaging(0.544) TCGA-WP-A9GB-01 4 55991451 55991451 T C KDR Missense_Mutation p.K4E 0.18 tolerated(0.35) benign(0.004) TCGA-WP-A9GB-01 5 110439579 110439579 A C WDR36 Missense_Mutation p.Q287P 0.44 deleterious(0) probably_damaging(0.999) TCGA-WP-A9GB-01 5 110439580 110439580 A T WDR36 Missense_Mutation p.Q287H 0.44 tolerated(0.06) probably_damaging(0.999) TCGA-WP-A9GB-01 5 127594508 127594508 A C FBN2 3'UTR 0.24 TCGA-WP-A9GB-01 5 137088363 137088363 T C HNRNPA0 3'UTR 0.30 TCGA-WP-A9GB-01 5 140604757 140604757 C T PCDHB14 Silent p.F560F 0.24 TCGA-WP-A9GB-01 5 141016128 141016128 T C HDAC3 Missense_Mutation p.Y42C 0.41 deleterious(0) possibly_damaging(0.638) TCGA-WP-A9GB-01 5 141694616 141694616 G A SPRY4 Missense_Mutation p.P43S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-WP-A9GB-01 5 14481717 14481717 A T TRIO Missense_Mutation p.Q2152L 0.23 benign(0.001) TCGA-WP-A9GB-01 5 149433667 149433667 G A CSF1R Missense_Mutation p.P962S 0.08 deleterious(0.02) benign(0.295) TCGA-WP-A9GB-01 5 156187957 156187957 T A SGCD 3'Flank 0.33 TCGA-WP-A9GB-01 5 167630814 167630814 A G TENM2 Missense_Mutation p.H1184R 0.16 deleterious(0) probably_damaging(0.998) TCGA-WP-A9GB-01 5 72204767 72204767 A T TNPO1 3'UTR 0.46 TCGA-WP-A9GB-01 5 81608630 81608630 A G ATP6AP1L Missense_Mutation p.D111G 0.25 tolerated(0.1) benign(0.013) TCGA-WP-A9GB-01 6 108489261 108489261 A T NR2E1 Intron 0.20 TCGA-WP-A9GB-01 6 152652933 152652933 T C SYNE1 Missense_Mutation p.K4296R 0.32 probably_damaging(0.997) TCGA-WP-A9GB-01 6 17804729 17804729 A T KIF13A Missense_Mutation p.Y773N 0.72 tolerated(0.23) benign(0.003) TCGA-WP-A9GB-01 6 30956218 30956218 C T MUC21 3'UTR 0.13 TCGA-WP-A9GB-01 6 44221442 44221442 T G HSP90AB1 3'UTR 0.22 TCGA-WP-A9GB-01 6 90448117 90448117 G A MDN1 Missense_Mutation p.R1551C 0.46 possibly_damaging(0.836) TCGA-WP-A9GB-01 6 90576105 90576105 C G CASP8AP2 RNA 0.23 TCGA-WP-A9GB-01 6 96986658 96986658 G A UFL1 Missense_Mutation p.R377H 0.10 deleterious(0.04) benign(0.07) TCGA-WP-A9GB-01 7 143055944 143055944 C T FAM131B Missense_Mutation p.E148K 0.48 deleterious(0) probably_damaging(0.997) TCGA-WP-A9GB-01 7 16317841 16317841 G C ISPD Silent p.S282S 0.23 TCGA-WP-A9GB-01 7 28996605 28996605 C A AC005013.5 5'Flank 0.34 TCGA-WP-A9GB-01 7 43918207 43918207 C T URGCP Silent p.P285P 0.24 TCGA-WP-A9GB-01 7 5347940 5347940 C T TNRC18 Missense_Mutation p.A2902T 0.25 unknown(0) TCGA-WP-A9GB-01 7 66767698 66767698 G C Y_RNA 5'Flank 0.77 TCGA-WP-A9GB-01 7 8258108 8258108 G A ICA1 Nonsense_Mutation p.R136* 0.48 TCGA-WP-A9GB-01 7 87536511 87536512 AC - DBF4 Frame_Shift_Del p.Y353* 0.47 TCGA-WP-A9GB-01 7 97984424 97984424 T A BAIAP2L1 Silent p.G48G 0.46 TCGA-WP-A9GB-01 8 125498135 125498144 ACAGCTCAGC - RNF139 Frame_Shift_Del p.Y82Sfs*4 0.22 TCGA-WP-A9GB-01 8 12990494 12990494 C T DLC1 Intron 0.30 TCGA-WP-A9GB-01 8 143558855 143558855 C A BAI1 Missense_Mutation p.N444K 0.59 tolerated(1) possibly_damaging(0.728) TCGA-WP-A9GB-01 8 2033509 2033509 A T MYOM2 Missense_Mutation p.Y544F 0.28 deleterious(0) probably_damaging(0.999) TCGA-WP-A9GB-01 8 2092920 2092920 C - MYOM2 3'UTR 0.35 TCGA-WP-A9GB-01 8 28385628 28385628 A G FZD3 Missense_Mutation p.T451A 0.30 tolerated(0.52) benign(0.067) TCGA-WP-A9GB-01 8 75928820 75928820 C T CRISPLD1 Missense_Mutation p.P250S 0.14 tolerated(0.25) benign(0.001) TCGA-WP-A9GB-01 8 75928821 75928821 C T CRISPLD1 Missense_Mutation p.P250L 0.14 deleterious(0.03) benign(0.046) TCGA-WP-A9GB-01 8 75928896 75928896 C T CRISPLD1 Missense_Mutation p.S275L 0.11 tolerated(0.23) benign(0.012) TCGA-WP-A9GB-01 8 98289741 98289741 G T TSPYL5 Missense_Mutation p.S111Y 0.18 tolerated(0.19) benign(0.24) TCGA-WP-A9GB-01 9 125289383 125289383 G T OR1N1 Missense_Mutation p.L64M 1.00 deleterious(0) probably_damaging(0.998) TCGA-WP-A9GB-01 9 136521767 136521767 C A DBH Silent p.I519I 0.54 TCGA-WP-A9GB-01 9 32543427 32543427 C T TOPORS Missense_Mutation p.A366T 0.10 tolerated(0.18) benign(0.05) TCGA-WP-A9GB-01 9 35799691 35799691 C A NPR2 Missense_Mutation p.A317D 0.15 deleterious(0) probably_damaging(0.97) TCGA-WP-A9GB-01 9 37486117 37486117 C G POLR1E Missense_Mutation p.L25V 0.16 tolerated(0.15) possibly_damaging(0.612) TCGA-WP-A9GB-01 9 91609359 91609359 G T C9orf47 3'UTR 0.25 TCGA-WP-A9GB-01 X 131573543 131573543 C T MBNL3 Missense_Mutation p.A33T 0.19 tolerated(0.83) benign(0.011) TCGA-WP-A9GB-01 X 139099820 139099820 A T RP11-364B14.1 RNA 0.38 TCGA-WP-A9GB-01 X 140985392 140985392 T A MAGEC3 Intron 0.38 TCGA-WP-A9GB-01 X 148561616 148561616 G A IDS 3'UTR 0.82 TCGA-WP-A9GB-01 X 18627005 18627005 T G CDKL5 Silent p.S673S 0.24 TCGA-WP-A9GB-01 X 3238224 3238224 T A MXRA5 Silent p.S1834S 0.38 TCGA-WP-A9GB-01 X 43817915 43817915 G T NDP 5'UTR 0.30 TCGA-WP-A9GB-01 X 47774883 47774883 G C ZNF81 Missense_Mutation p.G280R 0.24 tolerated(0.12) benign(0.062) TCGA-WP-A9GB-01 X 50213247 50213247 T A DGKK RNA 0.56 TCGA-WP-A9GB-01 X 57618337 57618337 A T ZXDB 5'UTR 0.30 TCGA-WP-A9GB-01 X 73812194 73812194 A T RLIM Missense_Mutation p.I319K 0.53 deleterious(0) unknown(0) TCGA-WP-A9GB-01 X 76938289 76938290 TC - ATRX Frame_Shift_Del p.E820Ifs*10 0.36 TCGA-X2-A95T-01 10 128935713 128935713 T A FAM196A 3'UTR 0.14 TCGA-X2-A95T-01 10 30987307 30987307 G T SVILP1 RNA 0.39 TCGA-X2-A95T-01 10 48389030 48389030 G A RBP3 Silent p.I616I 0.11 TCGA-X2-A95T-01 10 81075519 81075519 G A ZMIZ1 3'UTR 0.55 TCGA-X2-A95T-01 10 98741505 98741505 C T C10orf12 Missense_Mutation p.P120S 0.13 tolerated(0.15) possibly_damaging(0.465) TCGA-X2-A95T-01 10 99228071 99228071 A T MMS19 Missense_Mutation p.C386S 0.10 tolerated(0.84) benign(0.01) TCGA-X2-A95T-01 11 120894934 120894934 G A TBCEL 5'UTR 0.41 TCGA-X2-A95T-01 11 125770156 125770158 CTT - HYLS1 In_Frame_Del p.S299del 0.62 TCGA-X2-A95T-01 11 57982690 57982690 A T OR1S1 Silent p.T158T 0.73 TCGA-X2-A95T-01 11 62286210 62286210 G A AHNAK Missense_Mutation p.P5227S 0.48 probably_damaging(0.999) TCGA-X2-A95T-01 11 65268614 65268614 C T MALAT1 RNA 0.48 TCGA-X2-A95T-01 11 67132511 67132512 TC - CLCF1 3'UTR 0.37 TCGA-X2-A95T-01 11 77475700 77475700 C T RSF1 Silent p.L74L 0.36 TCGA-X2-A95T-01 12 56351136 56351136 T C PMEL Silent p.A317A 0.17 TCGA-X2-A95T-01 12 70953405 70953405 C T PTPRB Splice_Site p.X1478_splice 0.15 TCGA-X2-A95T-01 13 46946721 46946721 T C KIAA0226L 5'UTR 0.54 TCGA-X2-A95T-01 14 51442480 51442480 A G TRIM9 3'UTR 0.49 TCGA-X2-A95T-01 14 75078481 75078481 G T LTBP2 Missense_Mutation p.P56H 0.17 deleterious(0.03) probably_damaging(0.914) TCGA-X2-A95T-01 15 63055879 63055879 C T TLN2 Silent p.D1693D 0.64 TCGA-X2-A95T-01 15 79228027 79228027 G T CTSH Missense_Mutation p.P99T 0.18 deleterious(0.01) probably_damaging(0.916) TCGA-X2-A95T-01 16 11941583 11941584 TT - RSL1D1 Frame_Shift_Del p.K109Dfs*6 0.37 TCGA-X2-A95T-01 16 30992058 30992059 AG - SETD1A Splice_Site p.X1528_splice 0.37 TCGA-X2-A95T-01 16 57493517 57493519 ACA - COQ9 In_Frame_Del p.N252del 0.86 TCGA-X2-A95T-01 16 81077734 81077735 AT - ATMIN Frame_Shift_Del p.H544Qfs*7 0.29 TCGA-X2-A95T-01 16 88504643 88504643 C - ZNF469 Frame_Shift_Del p.P3561Lfs*131 0.36 TCGA-X2-A95T-01 17 3992098 3992098 A T ZZEF1 Silent p.P705P 0.10 TCGA-X2-A95T-01 17 43591883 43591883 C T LRRC37A4P RNA 0.12 TCGA-X2-A95T-01 17 74465965 74465965 C T AANAT Silent p.C224C 0.09 TCGA-X2-A95T-01 17 7579346 7579348 AAG - TP53 In_Frame_Del p.F113del 0.95 TCGA-X2-A95T-01 18 8784790 8784790 C T SOGA2 Silent p.S560S 0.11 TCGA-X2-A95T-01 19 1223038 1223038 C T STK11 Silent p.S325S 0.07 TCGA-X2-A95T-01 19 33349358 33349358 A C SLC7A9 Missense_Mutation p.F322C 0.29 deleterious(0) probably_damaging(0.995) TCGA-X2-A95T-01 19 50165229 50165230 AC - IRF3 Frame_Shift_Del p.F320* 0.35 TCGA-X2-A95T-01 19 50315965 50315965 T C FUZ Missense_Mutation p.N47S 0.46 deleterious(0) probably_damaging(0.953) TCGA-X2-A95T-01 19 6415614 6415614 G A KHSRP Missense_Mutation p.P607S 0.13 tolerated(0.14) benign(0.157) TCGA-X2-A95T-01 1 114646326 114646326 T C SYT6 Silent p.G278G 0.32 TCGA-X2-A95T-01 1 153270612 153270612 T C PGLYRP3 Splice_Site p.X283_splice 0.08 TCGA-X2-A95T-01 1 235929491 235929491 A G LYST Silent p.P2003P 0.11 TCGA-X2-A95T-01 1 237754226 237754226 C T RYR2 Missense_Mutation p.A1365V 0.07 benign(0) TCGA-X2-A95T-01 1 40028090 40028090 T A PABPC4 Splice_Site p.X557_splice 0.10 TCGA-X2-A95T-01 1 46740287 46740287 C T RAD54L Silent p.V589V 0.51 TCGA-X2-A95T-01 20 17956397 17956398 AG - MGME1 Frame_Shift_Del p.D197* 0.31 TCGA-X2-A95T-01 20 33834738 33834738 G A MMP24 Missense_Mutation p.M114I 0.56 deleterious(0) probably_damaging(0.968) TCGA-X2-A95T-01 22 19752552 19752552 C T TBX1 Silent p.S252S 0.14 TCGA-X2-A95T-01 22 38323601 38323605 ACCCT GCC MICALL1 Frame_Shift_Del p.N550Sfs*20 0.08 TCGA-X2-A95T-01 22 39887155 39887155 C T MGAT3 3'UTR 0.11 TCGA-X2-A95T-01 22 50718148 50718148 T C PLXNB2 Missense_Mutation p.K1434E 0.86 deleterious(0) probably_damaging(0.999) TCGA-X2-A95T-01 2 128900693 128900694 AA - UGGT1 Frame_Shift_Del p.K583Sfs*4 0.32 TCGA-X2-A95T-01 2 219563973 219563973 C T STK36 Missense_Mutation p.R1236W 0.50 tolerated(0.18) probably_damaging(0.987) TCGA-X2-A95T-01 2 231988307 231988307 C T HTR2B Missense_Mutation p.A58T 0.11 deleterious(0.01) possibly_damaging(0.821) TCGA-X2-A95T-01 2 54080233 54080234 AA - GPR75 3'UTR 0.20 TCGA-X2-A95T-01 2 9515060 9515060 T C ASAP2 Missense_Mutation p.L578P 0.68 tolerated(0.13) possibly_damaging(0.744) TCGA-X2-A95T-01 3 119133104 119133134 TCTGTCTCCTCCACTCCCACCTGCTCCTCCC - ARHGAP31 Frame_Shift_Del p.S778Qfs*26 0.31 TCGA-X2-A95T-01 3 132320719 132320719 A T ACKR4 3'UTR 0.56 TCGA-X2-A95T-01 3 132320720 132320720 C T ACKR4 3'UTR 0.56 TCGA-X2-A95T-01 3 150128722 150128722 C T TSC22D2 Missense_Mutation p.P529S 0.46 tolerated(0.07) possibly_damaging(0.641) TCGA-X2-A95T-01 3 178968712 178968712 G A KCNMB3 Missense_Mutation p.P27S 0.48 tolerated(1) benign(0.004) TCGA-X2-A95T-01 3 25622051 25622051 C A RARB Missense_Mutation p.D208E 0.58 tolerated(0.4) benign(0.001) TCGA-X2-A95T-01 3 44346765 44346766 TA - TOPAZ1 Frame_Shift_Del p.Y1331* 0.27 TCGA-X2-A95T-01 3 47043686 47043686 T C NBEAL2 Missense_Mutation p.S1687P 0.14 deleterious(0) possibly_damaging(0.885) TCGA-X2-A95T-01 3 97194270 97194270 G A EPHA6 Missense_Mutation p.V657I 0.09 tolerated(0.25) benign(0.036) TCGA-X2-A95T-01 3 9827049 9827050 CT - TADA3 Frame_Shift_Del p.A292* 0.28 TCGA-X2-A95T-01 4 1824837 1824837 C T LETM1 Missense_Mutation p.V452M 0.60 deleterious(0.01) possibly_damaging(0.738) TCGA-X2-A95T-01 4 183650181 183650181 A C TENM3 Missense_Mutation p.Y811S 0.52 deleterious(0.01) possibly_damaging(0.86) TCGA-X2-A95T-01 4 185652114 185652114 C T CENPU Missense_Mutation p.R19H 0.17 tolerated(0.52) unknown(0) TCGA-X2-A95T-01 4 42041023 42041024 AG - SLC30A9 Frame_Shift_Del p.F233* 0.10 TCGA-X2-A95T-01 4 71024318 71024318 T A C4orf40 Missense_Mutation p.F117I 0.40 tolerated(0.72) unknown(0) TCGA-X2-A95T-01 4 74347514 74347514 G - AFM Frame_Shift_Del p.G8Vfs*9 0.22 TCGA-X2-A95T-01 5 180687743 180687746 CAAG - TRIM52 Frame_Shift_Del p.C23Wfs*21 0.47 TCGA-X2-A95T-01 6 155155029 155155029 A G SCAF8 3'UTR 0.38 TCGA-X2-A95T-01 6 168464403 168464403 G A FRMD1 Missense_Mutation p.R228W 0.43 deleterious(0) possibly_damaging(0.66) TCGA-X2-A95T-01 6 88119637 88119637 T C C6ORF165 Missense_Mutation p.I27T 0.49 tolerated(0.84) benign(0) TCGA-X2-A95T-01 7 106786808 106786809 TA - PRKAR2B Frame_Shift_Del p.Y215* 0.32 TCGA-X2-A95T-01 7 72717970 72717973 GCAT - NSUN5 Frame_Shift_Del p.H332Pfs*51 0.48 TCGA-X2-A95T-01 8 126036840 126036842 GAA - KIAA0196 3'UTR 0.50 TCGA-X2-A95T-01 8 143352524 143352524 T C TSNARE1 Intron 0.22 TCGA-X2-A95T-01 8 145660403 145660403 G A TONSL Silent p.D1001D 0.89 TCGA-X2-A95T-01 8 26218555 26218555 T G PPP2R2A Silent p.A185A 0.40 TCGA-X2-A95T-01 8 55060223 55060223 G T MRPL15 Missense_Mutation p.D279Y 0.17 deleterious(0) probably_damaging(0.97) TCGA-X2-A95T-01 8 66620234 66620237 AGAG - MTFR1 Frame_Shift_Del p.R309Cfs*8 0.93 TCGA-X2-A95T-01 9 103109310 103109310 C A TEX10 Missense_Mutation p.V187L 0.58 tolerated(0.73) benign(0.063) TCGA-X2-A95T-01 9 139935530 139935531 CT - NPDC1 Frame_Shift_Del p.Q123Pfs*89 0.32 TCGA-X2-A95T-01 X 134033514 134033514 A C MOSPD1 5'UTR 0.54 TCGA-X2-A95T-01 X 144910774 144910774 T A TMEM257 3'UTR 0.35 TCGA-X2-A95T-01 X 76939473 76939474 TT - ATRX Frame_Shift_Del p.K425Rfs*8 0.52 TCGA-X6-A7W8-01 10 26518625 26518625 C T GAD2 Silent p.I253I 0.67 TCGA-X6-A7W8-01 10 48371038 48371038 G T ZNF488 Missense_Mutation p.R169L 0.34 tolerated(0.31) benign(0.283) TCGA-X6-A7W8-01 10 93274074 93274074 C T HECTD2 3'UTR 0.67 TCGA-X6-A7W8-01 11 1018666 1018666 G C MUC6 Missense_Mutation p.Q1379E 0.32 unknown(0) TCGA-X6-A7W8-01 11 121061441 121061441 G T TECTA Missense_Mutation p.V2132F 0.53 tolerated_low_confidence(0.11) benign(0.017) TCGA-X6-A7W8-01 11 123624968 123624968 T C OR6X1 Missense_Mutation p.R87G 0.22 tolerated(0.05) benign(0.001) TCGA-X6-A7W8-01 11 6977493 6977493 C A ZNF215 Missense_Mutation p.H429N 0.23 deleterious(0) probably_damaging(0.971) TCGA-X6-A7W8-01 11 7489913 7489913 T G SYT9 3'UTR 0.38 TCGA-X6-A7W8-01 11 74911337 74911337 G A SLCO2B1 Silent p.T556T 0.68 TCGA-X6-A7W8-01 11 76508165 76508166 - T TSKU 3'UTR 0.19 TCGA-X6-A7W8-01 11 92495307 92495307 T - FAT3 Frame_Shift_Del p.F1319Lfs*9 0.41 TCGA-X6-A7W8-01 12 72866951 72866951 C A TRHDE Silent p.G480G 0.24 TCGA-X6-A7W8-01 12 95693942 95693942 C T VEZT Silent p.A611A 0.26 TCGA-X6-A7W8-01 13 26436460 26436460 G A ATP8A2 Missense_Mutation p.G1033R 0.21 deleterious(0) probably_damaging(1) TCGA-X6-A7W8-01 13 39438633 39438633 C T FREM2 Missense_Mutation p.R2625C 0.45 deleterious(0) probably_damaging(0.981) TCGA-X6-A7W8-01 14 23844881 23844881 G A IL25 Missense_Mutation p.R109H 0.18 tolerated(0.06) probably_damaging(0.965) TCGA-X6-A7W8-01 14 23902315 23902315 C T MYH7 Missense_Mutation p.R108H 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-X6-A7W8-01 14 37145611 37145611 A G PAX9 Missense_Mutation p.Q327R 0.17 deleterious_low_confidence(0.04) benign(0.039) TCGA-X6-A7W8-01 14 64724010 64724010 C T ESR2 Missense_Mutation p.G342E 0.42 deleterious(0) probably_damaging(0.999) TCGA-X6-A7W8-01 14 89110777 89110777 C A EML5 Missense_Mutation p.E1369D 0.12 tolerated(0.12) benign(0.205) TCGA-X6-A7W8-01 15 54592542 54592542 T C UNC13C Silent p.Y1413Y 0.16 TCGA-X6-A7W8-01 15 55911602 55911603 - A PRTG 3'UTR 0.48 TCGA-X6-A7W8-01 16 1413272 1413272 G T UNKL 3'UTR 0.17 TCGA-X6-A7W8-01 17 10590121 10590121 C G SCO1 Missense_Mutation p.E232Q 0.10 deleterious(0.01) possibly_damaging(0.789) TCGA-X6-A7W8-01 17 12569313 12569313 C G MYOCD 5'UTR 0.33 TCGA-X6-A7W8-01 17 17770211 17770211 G A TOM1L2 Silent p.S313S 0.07 TCGA-X6-A7W8-01 17 18880226 18880226 C G SLC5A10 Missense_Mutation p.I302M 0.19 deleterious(0) probably_damaging(0.959) TCGA-X6-A7W8-01 17 34416094 34416094 C T CCL3 Missense_Mutation p.R68Q 0.14 deleterious(0) benign(0.393) TCGA-X6-A7W8-01 17 39471551 39471551 G A KRTAP17-1 3'UTR 0.51 TCGA-X6-A7W8-01 17 4634749 4634749 G A MED11 5'UTR 0.42 TCGA-X6-A7W8-01 17 76117083 76117083 C T TMC6 Intron 0.38 TCGA-X6-A7W8-01 17 7644169 7644169 C G DNAH2 Nonsense_Mutation p.Y516* 0.39 TCGA-X6-A7W8-01 18 44063558 44063558 G A LOXHD1 Silent p.Y1000Y 0.25 TCGA-X6-A7W8-01 19 30935152 30935152 C T ZNF536 Missense_Mutation p.P228L 0.62 tolerated(0.13) benign(0.001) TCGA-X6-A7W8-01 19 35835957 35835957 G C CD22 Missense_Mutation p.W712C 0.30 deleterious(0.01) probably_damaging(0.971) TCGA-X6-A7W8-01 19 51506971 51506971 C A KLK9 Missense_Mutation p.G198C 0.14 deleterious(0) probably_damaging(1) TCGA-X6-A7W8-01 19 9084637 9084637 G A MUC16 Missense_Mutation p.P2393L 0.21 unknown(0) TCGA-X6-A7W8-01 1 155205042 155205042 C T GBA Silent p.L483L 0.31 TCGA-X6-A7W8-01 1 15768968 15768968 G A CTRC Missense_Mutation p.V86M 0.72 deleterious(0.02) benign(0.08) TCGA-X6-A7W8-01 1 16265317 16265317 G C SPEN Silent p.L3603L 0.23 TCGA-X6-A7W8-01 1 21133158 21133158 A T EIF4G3 3'UTR 0.08 TCGA-X6-A7W8-01 1 220355632 220355632 C A RAB3GAP2 Missense_Mutation p.L759F 0.72 tolerated(0.09) probably_damaging(0.989) TCGA-X6-A7W8-01 1 25167588 25167588 A G CLIC4 3'UTR 0.82 TCGA-X6-A7W8-01 1 46546420 46546420 G T PIK3R3 Missense_Mutation p.L37I 0.23 tolerated(0.1) benign(0.282) TCGA-X6-A7W8-01 1 6195407 6195407 T A CHD5 Missense_Mutation p.K918M 0.29 deleterious(0) probably_damaging(0.996) TCGA-X6-A7W8-01 20 3127845 3127845 G A FASTKD5 Silent p.S624S 0.06 TCGA-X6-A7W8-01 20 43128900 43128900 T C SERINC3 3'UTR 0.50 TCGA-X6-A7W8-01 20 56225118 56225118 G T PMEPA1 3'UTR 0.18 TCGA-X6-A7W8-01 20 58883614 58883614 A T MIR646 RNA 0.08 TCGA-X6-A7W8-01 2 135260492 135260492 T G TMEM163 Missense_Mutation p.T179P 0.18 tolerated(0.06) possibly_damaging(0.563) TCGA-X6-A7W8-01 2 170012824 170012824 C A LRP2 Silent p.T4037T 0.16 TCGA-X6-A7W8-01 2 183106701 183106701 T A PDE1A Intron 0.45 TCGA-X6-A7W8-01 2 201343304 201343304 T - SPATS2L 3'UTR 0.43 TCGA-X6-A7W8-01 3 112068589 112068589 G T CD200 Missense_Mutation p.S267I 0.57 tolerated(0.09) probably_damaging(0.999) TCGA-X6-A7W8-01 3 129137259 129137259 G T EFCAB12 Silent p.R173R 0.43 TCGA-X6-A7W8-01 3 154834539 154834539 C - MME Frame_Shift_Del p.Q176Kfs*16 0.15 TCGA-X6-A7W8-01 3 44437985 44437985 A G TCAIM Silent p.A263A 0.71 TCGA-X6-A7W8-01 3 48955912 48955920 GGGGTGTAG - ARIH2OS In_Frame_Del p.Y222_P224del 0.17 TCGA-X6-A7W8-01 3 86990609 86990609 T A VGLL3 3'UTR 0.08 TCGA-X6-A7W8-01 4 110743600 110743600 G A GAR1 Missense_Mutation p.R176Q 0.30 tolerated_low_confidence(0.37) unknown(0) TCGA-X6-A7W8-01 4 152559829 152559829 C G FAM160A1 Missense_Mutation p.L383V 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-X6-A7W8-01 4 2515792 2515792 G A RNF4 3'UTR 0.80 TCGA-X6-A7W8-01 5 134106633 134106633 A G DDX46 Missense_Mutation p.K131E 0.33 tolerated(0.82) possibly_damaging(0.636) TCGA-X6-A7W8-01 5 140476099 140476099 C T PCDHB2 Silent p.T575T 0.22 TCGA-X6-A7W8-01 5 150930375 150930375 G A FAT2 Missense_Mutation p.R1452C 0.40 benign(0.39) TCGA-X6-A7W8-01 5 156533780 156533780 T C HAVCR2 Silent p.L84L 0.32 TCGA-X6-A7W8-01 5 174936049 174936049 C T SFXN1 Missense_Mutation p.P60L 0.16 tolerated(0.07) benign(0.008) TCGA-X6-A7W8-01 5 1877552 1877552 G A IRX4 3'Flank 0.17 TCGA-X6-A7W8-01 5 21975456 21975456 T C CDH12 Silent p.K90K 0.35 TCGA-X6-A7W8-01 5 35033586 35033586 A T AGXT2 Silent p.P218P 0.22 TCGA-X6-A7W8-01 5 35068325 35068325 A T PRLR Missense_Mutation p.L283Q 0.26 deleterious(0) probably_damaging(1) TCGA-X6-A7W8-01 5 49694756 49694756 C A EMB 3'UTR 0.16 TCGA-X6-A7W8-01 5 49694879 49694879 C G EMB 3'UTR 0.16 TCGA-X6-A7W8-01 6 109689572 109689572 C G CD164 3'UTR 0.40 TCGA-X6-A7W8-01 6 13281385 13281385 G C TBC1D7 Intron 0.39 TCGA-X6-A7W8-01 6 160679438 160679438 G A SLC22A2 Missense_Mutation p.P118S 0.21 deleterious(0.05) possibly_damaging(0.562) TCGA-X6-A7W8-01 6 33246400 33246400 C G B3GALT4 3'UTR 0.62 TCGA-X6-A7W8-01 6 88228563 88228563 C A RARS2 Silent p.G428G 0.75 TCGA-X6-A7W8-01 6 94066667 94066667 G A EPHA7 Silent p.T364T 0.17 TCGA-X6-A7W8-01 7 117199633 117199633 A G CFTR Missense_Mutation p.K503R 0.27 tolerated(0.65) benign(0.001) TCGA-X6-A7W8-01 7 123594537 123594537 C T SPAM1 Missense_Mutation p.R305C 0.47 deleterious(0) probably_damaging(1) TCGA-X6-A7W8-01 7 158534291 158534291 C T ESYT2 Silent p.P724P 0.54 TCGA-X6-A7W8-01 7 16834610 16834610 C A AGR2 Missense_Mutation p.G143V 0.21 deleterious(0) probably_damaging(1) TCGA-X6-A7W8-01 7 80374308 80374308 C G SEMA3C Missense_Mutation p.D720H 0.38 tolerated(0.12) benign(0.09) TCGA-X6-A7W8-01 8 119945327 119945327 T C TNFRSF11B Silent p.L81L 0.21 TCGA-X6-A7W8-01 8 57092040 57092040 C A PLAG1 5'UTR 0.57 TCGA-X6-A7W8-01 8 86573758 86573758 G A REXO1L1P Missense_Mutation p.R657C 0.13 deleterious(0.02) possibly_damaging(0.872) TCGA-X6-A7W8-01 8 94827670 94827670 C G TMEM67 Missense_Mutation p.Q968E 0.29 tolerated(0.08) benign(0.143) TCGA-X6-A7W8-01 9 104449456 104449456 T C GRIN3A Silent p.L242L 0.21 TCGA-X6-A7W8-01 9 131028291 131028291 T - GOLGA2 Frame_Shift_Del p.E204Nfs*9 0.32 TCGA-X6-A7W8-01 9 140267432 140267432 G A EXD3 Silent p.F129F 0.26 TCGA-X6-A7W8-01 9 74866950 74866950 A G GDA 3'Flank 0.46 TCGA-X6-A7W8-01 9 96080210 96080210 C T WNK2 Silent p.P2265P 0.43 TCGA-X6-A7W8-01 X 111914311 111914311 A G LHFPL1 Missense_Mutation p.V103A 0.89 tolerated(0.3) benign(0.314) TCGA-X6-A7W8-01 X 117677515 117677515 C A DOCK11 Nonsense_Mutation p.Y117* 0.62 TCGA-X6-A7W8-01 X 35820764 35820764 T A MAGEB16 Missense_Mutation p.F151I 0.60 deleterious(0) probably_damaging(0.988) TCGA-X6-A7W8-01 X 38031204 38031204 C T SRPX Silent p.T152T 0.36 TCGA-X6-A7W8-01 X 69595981 69595981 G A KIF4A Missense_Mutation p.R652H 0.26 tolerated(0.06) benign(0.022) TCGA-X6-A7W8-01 X 91877924 91877924 C G PCDH11X 3'UTR 0.18 TCGA-X6-A7WA-01 10 124803975 124803975 G A ACADSB Missense_Mutation p.E292K 0.18 deleterious(0.04) benign(0.101) TCGA-X6-A7WA-01 10 124803987 124803987 G C ACADSB Missense_Mutation p.G296R 0.16 deleterious(0) probably_damaging(0.999) TCGA-X6-A7WA-01 10 127459066 127459066 G C MMP21 Missense_Mutation p.F358L 0.43 deleterious(0.02) possibly_damaging(0.539) TCGA-X6-A7WA-01 10 127460862 127460862 G A MMP21 Nonsense_Mutation p.Q302* 0.38 TCGA-X6-A7WA-01 10 127464231 127464231 G C MMP21 Missense_Mutation p.Q54E 0.36 tolerated(0.34) benign(0.309) TCGA-X6-A7WA-01 10 127464306 127464306 G A MMP21 Missense_Mutation p.H29Y 0.37 deleterious(0.03) benign(0.209) TCGA-X6-A7WA-01 10 82298035 82298035 G T SH2D4B 5'UTR 0.18 TCGA-X6-A7WA-01 11 100836440 100836440 G T ARHGAP42 Missense_Mutation p.A495S 0.17 tolerated(0.66) probably_damaging(0.999) TCGA-X6-A7WA-01 11 118919013 118919013 G T HYOU1 Missense_Mutation p.L775I 0.21 tolerated(0.06) possibly_damaging(0.823) TCGA-X6-A7WA-01 11 44636912 44636912 G A CD82 Missense_Mutation p.V143M 0.40 deleterious(0) probably_damaging(0.977) TCGA-X6-A7WA-01 11 56258717 56258717 T C OR5M8 Missense_Mutation p.M44V 0.50 deleterious(0.01) benign(0.011) TCGA-X6-A7WA-01 11 57982800 57982800 C A OR1S1 Missense_Mutation p.A195D 0.08 tolerated(0.19) benign(0.168) TCGA-X6-A7WA-01 11 59211210 59211210 T C OR5A1 Missense_Mutation p.L190P 0.13 deleterious(0) possibly_damaging(0.766) TCGA-X6-A7WA-01 11 64825675 64825675 T C NAALADL1 Missense_Mutation p.D78G 0.34 tolerated(0.37) benign(0.017) TCGA-X6-A7WA-01 12 106889832 106889832 G C POLR3B Splice_Site p.X905_splice 0.11 TCGA-X6-A7WA-01 12 121461880 121461880 G C OASL Missense_Mutation p.D320E 0.09 tolerated(0.08) possibly_damaging(0.606) TCGA-X6-A7WA-01 12 2614110 2614110 G A CACNA1C Missense_Mutation p.G406R 0.42 deleterious(0.01) probably_damaging(0.952) TCGA-X6-A7WA-01 12 70004399 70004399 G T LRRC10 Missense_Mutation p.L74I 0.17 deleterious(0) probably_damaging(0.999) TCGA-X6-A7WA-01 12 80714332 80714332 C T OTOGL Silent p.H1302H 0.36 TCGA-X6-A7WA-01 13 48916825 48916849 GAGCTACAGAAAAACATAGAAATCA - RB1 Frame_Shift_Del p.E119Vfs*9 0.58 TCGA-X6-A7WA-01 14 102931611 102931611 T A TECPR2 Silent p.I1258I 0.49 TCGA-X6-A7WA-01 14 106391022 106391022 C T KIAA0125 3'Flank 0.31 TCGA-X6-A7WA-01 14 107199366 107199366 A G IGHV3-72 Missense_Mutation p.F9S 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.687) TCGA-X6-A7WA-01 14 24769692 24769692 T C NOP9 Missense_Mutation p.M109T 0.34 tolerated(0.55) benign(0.005) TCGA-X6-A7WA-01 14 65253825 65253825 G T SPTB Missense_Mutation p.A953D 0.18 deleterious(0) probably_damaging(0.961) TCGA-X6-A7WA-01 15 28929379 28929379 C A RP11-578F21.2 5'Flank 0.10 TCGA-X6-A7WA-01 15 41191400 41191400 A T VPS18 Silent p.G128G 0.47 TCGA-X6-A7WA-01 15 75133745 75133745 C - ULK3 Splice_Site p.X157_splice 0.59 TCGA-X6-A7WA-01 15 84868709 84868709 G A AC136698.1 3'Flank 0.55 TCGA-X6-A7WA-01 15 89837225 89837225 T G FANCI Missense_Mutation p.F818C 0.25 deleterious(0) probably_damaging(0.967) TCGA-X6-A7WA-01 16 23647531 23647531 G A PALB2 Silent p.G112G 0.31 TCGA-X6-A7WA-01 16 31487501 31487501 C T TGFB1I1 Nonsense_Mutation p.R295* 0.20 TCGA-X6-A7WA-01 16 5135115 5135115 C A FAM86A 3'UTR 0.14 TCGA-X6-A7WA-01 16 67912726 67912726 G T EDC4 Missense_Mutation p.S424I 0.17 deleterious(0) possibly_damaging(0.816) TCGA-X6-A7WA-01 17 30528000 30528000 C T RHOT1 Missense_Mutation p.R376W 0.08 deleterious(0) benign(0.144) TCGA-X6-A7WA-01 17 45517979 45517979 C A EFCAB13 Missense_Mutation p.Q941K 0.48 tolerated_low_confidence(0.08) benign(0.006) TCGA-X6-A7WA-01 17 47246211 47246211 C T B4GALNT2 Nonsense_Mutation p.R482* 0.58 TCGA-X6-A7WA-01 17 4804247 4804247 A G C17orf107 3'UTR 0.85 TCGA-X6-A7WA-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.93 deleterious(0.01) possibly_damaging(0.876) TCGA-X6-A7WA-01 19 14758109 14758109 C G EMR3 Missense_Mutation p.E256Q 0.13 tolerated(0.05) possibly_damaging(0.725) TCGA-X6-A7WA-01 19 17756606 17756606 C A UNC13A Nonsense_Mutation p.E745* 0.53 TCGA-X6-A7WA-01 19 19613171 19613171 C T GATAD2A Missense_Mutation p.T536M 0.43 tolerated(0.13) benign(0.012) TCGA-X6-A7WA-01 19 46214467 46214467 G T FBXO46 3'UTR 0.25 TCGA-X6-A7WA-01 19 53995831 53995831 C A ZNF813 3'UTR 0.09 TCGA-X6-A7WA-01 1 169838087 169838087 A G SCYL3 Missense_Mutation p.L240P 0.45 deleterious(0) probably_damaging(0.986) TCGA-X6-A7WA-01 1 169838088 169838088 G A SCYL3 Silent p.L240L 0.46 TCGA-X6-A7WA-01 1 20141326 20141326 G T RNF186 Missense_Mutation p.A90D 0.20 tolerated(0.08) benign(0.202) TCGA-X6-A7WA-01 1 209957053 209957053 G T C1orf74 Intron 0.22 TCGA-X6-A7WA-01 1 33625313 33625313 G T TRIM62 Missense_Mutation p.A246D 0.18 tolerated(0.34) benign(0.08) TCGA-X6-A7WA-01 20 30147446 30147446 A G HM13 Missense_Mutation p.I281V 0.45 tolerated(0.54) benign(0.012) TCGA-X6-A7WA-01 20 57768382 57768382 G A ZNF831 Missense_Mutation p.G770R 0.34 tolerated(0.11) benign(0.041) TCGA-X6-A7WA-01 20 6060214 6060214 T C FERMT1 Missense_Mutation p.S577G 0.35 tolerated(0.24) benign(0.003) TCGA-X6-A7WA-01 21 15858355 15858355 A T SAMSN1 Missense_Mutation p.C402S 0.12 deleterious(0) probably_damaging(0.944) TCGA-X6-A7WA-01 21 38525503 38525503 T G TTC3 Missense_Mutation p.F889C 0.39 deleterious(0) probably_damaging(1) TCGA-X6-A7WA-01 22 25753377 25753377 C G LRP5L Missense_Mutation p.D95H 0.03 deleterious(0) probably_damaging(0.999) TCGA-X6-A7WA-01 22 31740857 31740857 G A PATZ1 Silent p.P244P 0.33 TCGA-X6-A7WA-01 22 43972289 43972289 T C EFCAB6 Missense_Mutation p.Y1103C 0.59 tolerated(0.18) benign(0.003) TCGA-X6-A7WA-01 2 107084712 107084712 G A RGPD3 Silent p.Y11Y 0.33 TCGA-X6-A7WA-01 2 125232436 125232436 C T CNTNAP5 Nonsense_Mutation p.R347* 0.08 TCGA-X6-A7WA-01 2 128394479 128394479 G C MYO7B Missense_Mutation p.E2080D 0.41 deleterious(0.03) probably_damaging(0.99) TCGA-X6-A7WA-01 2 149511511 149511511 G C EPC2 Missense_Mutation p.E159Q 0.45 deleterious(0) possibly_damaging(0.776) TCGA-X6-A7WA-01 2 238820257 238820257 C T RAMP1 Silent p.F93F 0.12 TCGA-X6-A7WA-01 2 27505608 27505608 C T TRIM54 Silent p.F3F 0.38 TCGA-X6-A7WA-01 2 29455189 29455189 G A ALK Silent p.N871N 0.28 TCGA-X6-A7WA-01 2 43797559 43797559 G A THADA Nonsense_Mutation p.Q719* 0.15 TCGA-X6-A7WA-01 2 96993670 96993670 G T ITPRIPL1 Missense_Mutation p.S442I 0.18 tolerated(0.22) benign(0.001) TCGA-X6-A7WA-01 3 121980902 121980902 G A CASR Silent p.R340R 0.42 TCGA-X6-A7WA-01 3 153995410 153995410 G A DHX36 Missense_Mutation p.H889Y 0.43 tolerated(0.34) benign(0.326) TCGA-X6-A7WA-01 3 184008046 184008046 G A ECE2 Missense_Mutation p.E637K 0.22 tolerated(0.24) benign(0.212) TCGA-X6-A7WA-01 3 74419133 74419133 C G CNTN3 Missense_Mutation p.G223A 0.28 deleterious(0.04) probably_damaging(0.994) TCGA-X6-A7WA-01 4 74864191 74864191 G C CXCL5 Missense_Mutation p.S36R 0.46 tolerated(0.12) benign(0.006) TCGA-X6-A7WA-01 6 130363924 130363924 C T L3MBTL3 Missense_Mutation p.T27M 0.32 deleterious(0) probably_damaging(0.999) TCGA-X6-A7WA-01 6 82456445 82456445 A - FAM46A 3'UTR 0.29 TCGA-X6-A7WA-01 7 103234170 103234170 G A RELN Nonsense_Mutation p.R1291* 0.41 TCGA-X6-A7WA-01 7 17931207 17931207 A G SNX13 Silent p.L94L 0.56 TCGA-X6-A7WA-01 7 19185057 19185057 C A FERD3L 5'Flank 0.11 TCGA-X6-A7WA-01 8 139190892 139190892 C G FAM135B Missense_Mutation p.K305N 0.53 tolerated(0.05) possibly_damaging(0.84) TCGA-X6-A7WA-01 8 141829033 141829033 C G PTK2 Missense_Mutation p.E245D 0.38 tolerated(0.39) benign(0.005) TCGA-X6-A7WA-01 9 368275 368275 G A DOCK8 Intron 0.33 TCGA-X6-A7WA-01 9 86468545 86468547 TTA - KIF27 In_Frame_Del p.N1118del 0.41 TCGA-X6-A7WA-01 X 119691834 119691834 A T CUL4B Missense_Mutation p.V224E 0.35 deleterious(0) probably_damaging(0.991) TCGA-X6-A7WA-01 X 153295602 153295602 T A MECP2 3'Flank 0.34 TCGA-X6-A7WB-01 10 30654209 30654209 T C AL161651.1 5'Flank 0.47 TCGA-X6-A7WB-01 10 45602310 45602310 G A RSU1P2 RNA 0.46 TCGA-X6-A7WB-01 10 47088299 47088299 C T NPY4R 3'UTR 0.13 TCGA-X6-A7WB-01 11 130275163 130275163 G T ADAMTS8 3'UTR 0.50 TCGA-X6-A7WB-01 11 130716823 130716823 A T RP11-890B15.2 RNA 0.49 TCGA-X6-A7WB-01 11 19213974 19213974 C T CSRP3 Missense_Mutation p.A8T 0.83 tolerated(0.55) benign(0.005) TCGA-X6-A7WB-01 11 59211520 59211520 C A OR5A1 Nonsense_Mutation p.Y293* 0.73 TCGA-X6-A7WB-01 11 62491094 62491094 C T HNRNPUL2 Missense_Mutation p.G286R 0.35 deleterious(0) probably_damaging(0.999) TCGA-X6-A7WB-01 11 64120893 64120893 G T CCDC88B Missense_Mutation p.S1253I 0.25 deleterious(0.04) possibly_damaging(0.616) TCGA-X6-A7WB-01 11 6953434 6953434 G T ZNF215 5'UTR 0.23 TCGA-X6-A7WB-01 11 93462896 93462896 C A KIAA1731 Missense_Mutation p.H2506N 0.07 deleterious(0.02) benign(0.19) TCGA-X6-A7WB-01 12 101560299 101560299 C A SLC5A8 Missense_Mutation p.S500I 0.46 tolerated(0.07) benign(0.024) TCGA-X6-A7WB-01 12 113770628 113770628 A T SLC8B1 Missense_Mutation p.L19Q 0.50 tolerated_low_confidence(0.11) benign(0.025) TCGA-X6-A7WB-01 12 113837390 113837390 T C SDS Missense_Mutation p.I42V 0.42 deleterious(0.04) possibly_damaging(0.665) TCGA-X6-A7WB-01 12 49942913 49942913 G A KCNH3 Silent p.T475T 0.43 TCGA-X6-A7WB-01 12 56236705 56236705 T C MMP19 5'UTR 0.17 TCGA-X6-A7WB-01 12 6173479 6173479 A C VWF Silent p.L455L 0.61 TCGA-X6-A7WB-01 13 21006272 21006272 G A CRYL1 Missense_Mutation p.A201V 0.95 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-X6-A7WB-01 14 23885479 23885479 G T MYH7 Missense_Mutation p.L1563M 0.27 tolerated(0.07) probably_damaging(0.933) TCGA-X6-A7WB-01 15 28599812 28599812 T A RP11-483E23.2 RNA 0.49 TCGA-X6-A7WB-01 15 54003088 54003088 T A WDR72 Missense_Mutation p.H307L 0.83 tolerated(0.6) benign(0.224) TCGA-X6-A7WB-01 15 75122589 75122589 G T CPLX3 Missense_Mutation p.G124V 0.91 deleterious(0) probably_damaging(1) TCGA-X6-A7WB-01 16 21048116 21048116 C T DNAH3 Missense_Mutation p.V1669I 0.39 tolerated(0.43) benign(0.001) TCGA-X6-A7WB-01 16 67759328 67759328 G T RANBP10 3'UTR 0.21 TCGA-X6-A7WB-01 16 89341308 89341308 T A ANKRD11 Missense_Mutation p.R2543W 0.21 probably_damaging(0.999) TCGA-X6-A7WB-01 17 1540100 1540100 C T SCARF1 Silent p.P512P 0.51 TCGA-X6-A7WB-01 17 34199243 34199243 A G CCL5 3'UTR 0.58 TCGA-X6-A7WB-01 17 61949926 61949926 G A CSH2 Intron 0.42 TCGA-X6-A7WB-01 17 74934103 74934103 T C MGAT5B Missense_Mutation p.Y497H 0.67 tolerated(0.21) benign(0.149) TCGA-X6-A7WB-01 17 7578524 7578524 G A TP53 Nonsense_Mutation p.Q136* 0.87 TCGA-X6-A7WB-01 17 76113704 76113704 G T TMC6 Nonsense_Mutation p.C681* 0.34 TCGA-X6-A7WB-01 17 7734479 7734479 G T DNAH2 Missense_Mutation p.L4102F 0.29 possibly_damaging(0.656) TCGA-X6-A7WB-01 17 7826437 7826437 G T KCNAB3 Missense_Mutation p.P400T 0.20 deleterious(0) benign(0.183) TCGA-X6-A7WB-01 18 54815078 54815078 C T BOD1L2 3'UTR 0.75 TCGA-X6-A7WB-01 19 33406377 33406377 G A CEP89 Silent p.H477H 0.64 TCGA-X6-A7WB-01 19 42461265 42461265 T A RABAC1 Missense_Mutation p.E125V 0.31 deleterious(0) probably_damaging(0.939) TCGA-X6-A7WB-01 19 42482860 42482860 T C ATP1A3 Missense_Mutation p.T523A 0.48 deleterious(0) benign(0.066) TCGA-X6-A7WB-01 19 45392129 45392129 G C PVRL2 3'UTR 0.47 TCGA-X6-A7WB-01 19 45593722 45593722 C T GEMIN7 Missense_Mutation p.A117V 0.36 deleterious(0) probably_damaging(0.996) TCGA-X6-A7WB-01 19 48925103 48925103 C A GRIN2D Missense_Mutation p.T718K 0.43 deleterious(0) probably_damaging(1) TCGA-X6-A7WB-01 19 55147022 55147022 C A LILRB1 Missense_Mutation p.H539N 0.50 tolerated(0.14) benign(0) TCGA-X6-A7WB-01 19 8139994 8139996 GGG TT FBN3 Frame_Shift_Del p.P2554Qfs*144 0.80 TCGA-X6-A7WB-01 19 9297055 9297055 T C OR7D2 Missense_Mutation p.Y200H 0.34 deleterious_low_confidence(0.01) benign(0.33) TCGA-X6-A7WB-01 1 11579818 11579818 C A PTCHD2 Missense_Mutation p.P694H 0.50 tolerated(0.18) possibly_damaging(0.705) TCGA-X6-A7WB-01 1 149858701 149858701 G A HIST2H2AC Silent p.L59L 0.38 TCGA-X6-A7WB-01 1 152785245 152785245 G A LCE1B Missense_Mutation p.G108E 0.32 deleterious_low_confidence(0) unknown(0) TCGA-X6-A7WB-01 1 155003093 155003093 A C DCST2 Silent p.R278R 0.33 TCGA-X6-A7WB-01 1 15654992 15654992 A C FHAD1 Intron 0.27 TCGA-X6-A7WB-01 1 158324417 158324417 T A CD1E Missense_Mutation p.S103R 0.31 tolerated(0.25) benign(0.003) TCGA-X6-A7WB-01 1 158576965 158576965 C A OR10Z1 Missense_Mutation p.T246K 0.84 deleterious(0) possibly_damaging(0.623) TCGA-X6-A7WB-01 1 16355303 16355303 C T CLCNKA Missense_Mutation p.T339I 0.57 deleterious(0) probably_damaging(1) TCGA-X6-A7WB-01 1 204379896 204379896 T G PPP1R15B Missense_Mutation p.N215T 0.25 deleterious(0.01) benign(0.014) TCGA-X6-A7WB-01 1 23836312 23836312 G A E2F2 3'UTR 0.39 TCGA-X6-A7WB-01 1 35578631 35578631 G A ZMYM1 Silent p.T400T 0.40 TCGA-X6-A7WB-01 1 35824588 35824588 G T ZMYM4 Missense_Mutation p.D50Y 0.42 deleterious_low_confidence(0.01) benign(0.259) TCGA-X6-A7WB-01 20 1350174 1350174 G T FKBP1A 3'UTR 0.83 TCGA-X6-A7WB-01 20 2821415 2821415 C T VPS16 5'UTR 1.00 TCGA-X6-A7WB-01 20 33097335 33097335 A G ITCH 3'Flank 0.58 TCGA-X6-A7WB-01 21 33641342 33641342 T A MIS18A 3'UTR 0.44 TCGA-X6-A7WB-01 3 129368279 129368279 A T TMCC1 3'UTR 0.15 TCGA-X6-A7WB-01 3 155203488 155203488 G C PLCH1 Silent p.L885L 0.48 TCGA-X6-A7WB-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.40 deleterious(0.01) probably_damaging(1) TCGA-X6-A7WB-01 3 194182934 194182934 A G ATP13A3 5'UTR 0.44 TCGA-X6-A7WB-01 3 38022719 38022719 G T CTDSPL 3'UTR 0.33 TCGA-X6-A7WB-01 4 13543538 13543538 G C NKX3-2 3'UTR 0.40 TCGA-X6-A7WB-01 4 77660543 77660543 G T SHROOM3 Missense_Mutation p.S406I 0.21 deleterious(0.01) probably_damaging(0.942) TCGA-X6-A7WB-01 5 141336594 141336594 G A PCDH12 Missense_Mutation p.P275S 0.47 tolerated(0.06) probably_damaging(1) TCGA-X6-A7WB-01 5 149357574 149357574 T C SLC26A2 Missense_Mutation p.I120T 0.43 deleterious(0.02) probably_damaging(0.987) TCGA-X6-A7WB-01 6 118802965 118802965 C G CEP85L Missense_Mutation p.K577N 0.32 tolerated(0.22) probably_damaging(0.999) TCGA-X6-A7WB-01 6 29574885 29574885 C T GABBR1 Nonsense_Mutation p.W701* 0.49 TCGA-X6-A7WB-01 6 30652643 30652643 C T PPP1R18 Missense_Mutation p.A385T 0.48 tolerated_low_confidence(0.11) benign(0.009) TCGA-X6-A7WB-01 6 31860471 31860471 C G EHMT2 Silent p.L236L 0.60 TCGA-X6-A7WB-01 6 34003799 34003799 G A GRM4 Silent p.P696P 0.50 TCGA-X6-A7WB-01 6 43323074 43323074 A G ZNF318 Silent p.A666A 0.43 TCGA-X6-A7WB-01 6 90305714 90305714 A T ANKRD6 Missense_Mutation p.D67V 0.92 deleterious(0) possibly_damaging(0.777) TCGA-X6-A7WB-01 7 100686958 100686958 G T MUC17 Missense_Mutation p.E4087D 0.37 unknown(0) TCGA-X6-A7WB-01 7 107717493 107717493 T C LAMB4 Missense_Mutation p.T674A 0.44 tolerated(0.12) benign(0.168) TCGA-X6-A7WB-01 7 143057288 143057288 A G FAM131B Intron 0.52 TCGA-X6-A7WB-01 7 149503042 149503042 G A SSPO RNA 0.69 TCGA-X6-A7WB-01 7 55273223 55273223 G T EGFR Missense_Mutation p.K1182N 0.23 tolerated(0.14) benign(0.24) TCGA-X6-A7WB-01 7 82764508 82764508 T C PCLO Silent p.Q786Q 0.65 TCGA-X6-A7WB-01 7 98565132 98565132 G T TRRAP Missense_Mutation p.E2434D 0.24 benign(0.027) TCGA-X6-A7WB-01 8 101931639 101931639 A C YWHAZ 3'UTR 0.38 TCGA-X6-A7WB-01 8 104336838 104336838 T C FZD6 Silent p.S168S 0.46 TCGA-X6-A7WB-01 8 57077131 57077131 A T PLAG1 3'UTR 0.05 TCGA-X6-A7WB-01 9 117826121 117826121 G A TNC Silent p.V1238V 0.44 TCGA-X6-A7WB-01 9 130529281 130529281 C T SH2D3C Intron 0.46 TCGA-X6-A7WB-01 9 131152199 131152199 C T URM1 3'UTR 0.48 TCGA-X6-A7WB-01 9 136401833 136401833 G T ADAMTSL2 5'UTR 0.61 TCGA-X6-A7WB-01 9 4662858 4662858 C T PPAPDC2 Silent p.A161A 0.50 TCGA-X6-A7WB-01 9 86275758 86275758 G A UBQLN1 3'UTR 0.55 TCGA-X6-A7WB-01 X 9912725 9912725 G T SHROOM2 Silent p.R1452R 0.49 TCGA-X6-A7WC-01 10 112270097 112270097 C - DUSP5 Frame_Shift_Del p.P357Lfs*43 0.19 TCGA-X6-A7WC-01 10 27962554 27962554 A G MKX 3'UTR 0.15 TCGA-X6-A7WC-01 10 88024517 88024517 C T GRID1 Intron 0.35 TCGA-X6-A7WC-01 10 97956691 97956691 G A BLNK Silent p.A408A 0.30 TCGA-X6-A7WC-01 11 34460525 34460525 G C CAT 5'UTR 0.43 TCGA-X6-A7WC-01 11 56000184 56000184 C A OR5T2 Missense_Mutation p.D160Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-X6-A7WC-01 11 56409257 56409257 A G OR5AP2 Missense_Mutation p.V220A 0.26 deleterious(0) possibly_damaging(0.491) TCGA-X6-A7WC-01 11 57971208 57971208 A C OR1S2 Missense_Mutation p.M149R 0.26 deleterious(0) possibly_damaging(0.883) TCGA-X6-A7WC-01 11 66413655 66413655 T A RBM14-RBM4 3'UTR 0.09 TCGA-X6-A7WC-01 11 67053780 67053780 G A ADRBK1 3'UTR 0.40 TCGA-X6-A7WC-01 11 7110702 7110702 C A RBMXL2 Silent p.G117G 0.40 TCGA-X6-A7WC-01 11 76901877 76901877 C T MYO7A Missense_Mutation p.R1296W 0.18 tolerated(0.19) probably_damaging(0.924) TCGA-X6-A7WC-01 12 113307826 113307826 T C RPH3A Missense_Mutation p.S260P 0.26 tolerated(0.32) benign(0) TCGA-X6-A7WC-01 12 117768198 117768198 C T NOS1 Missense_Mutation p.G226E 0.17 tolerated_low_confidence(1) benign(0.002) TCGA-X6-A7WC-01 12 6959716 6959716 C A CDCA3 Silent p.L55L 0.27 TCGA-X6-A7WC-01 12 80770909 80770909 G A OTOGL Missense_Mutation p.R2254Q 0.30 deleterious(0.02) benign(0.016) TCGA-X6-A7WC-01 13 25283514 25283514 G T ATP12A Missense_Mutation p.A842S 0.26 tolerated(1) benign(0.329) TCGA-X6-A7WC-01 13 45589177 45589177 A G GPALPP1 Missense_Mutation p.R167G 0.09 deleterious(0) probably_damaging(0.931) TCGA-X6-A7WC-01 13 66879148 66879148 C A PCDH9 Missense_Mutation p.G1118V 0.27 tolerated(0.2) benign(0.013) TCGA-X6-A7WC-01 13 72014665 72014665 A T DACH1 3'UTR 0.32 TCGA-X6-A7WC-01 13 77798600 77798600 T C MYCBP2 Silent p.G937G 0.40 TCGA-X6-A7WC-01 14 24113363 24113363 C A DHRS2 Missense_Mutation p.P178T 0.53 deleterious(0) probably_damaging(0.995) TCGA-X6-A7WC-01 14 31091521 31091521 G T SCFD1 5'UTR 0.18 TCGA-X6-A7WC-01 15 34028478 34028478 C G RYR3 Silent p.L2489L 0.15 TCGA-X6-A7WC-01 15 43924435 43924435 T C CATSPER2 Missense_Mutation p.Y508C 0.06 deleterious(0) probably_damaging(0.948) TCGA-X6-A7WC-01 15 84611408 84611408 A G ADAMTSL3 Silent p.R726R 0.16 TCGA-X6-A7WC-01 15 91034675 91034675 A T IQGAP1 Missense_Mutation p.Q1453H 0.14 deleterious(0) possibly_damaging(0.726) TCGA-X6-A7WC-01 16 10788293 10788293 C T TEKT5 Silent p.S146S 0.21 TCGA-X6-A7WC-01 16 4626242 4626242 G A C16orf96 Silent p.Q587Q 0.27 TCGA-X6-A7WC-01 16 68896912 68896912 A G TANGO6 Missense_Mutation p.Y267C 0.53 deleterious(0) probably_damaging(0.998) TCGA-X6-A7WC-01 16 77775652 77775652 C - NUDT7 Frame_Shift_Del p.F175Lfs*17 0.35 TCGA-X6-A7WC-01 17 19451303 19451303 C T SLC47A1 Silent p.Y104Y 0.04 TCGA-X6-A7WC-01 17 19611114 19611114 G A SLC47A2 Silent p.T260T 0.11 TCGA-X6-A7WC-01 17 45787898 45787898 G A TBKBP1 Missense_Mutation p.S585N 0.78 deleterious(0) unknown(0) TCGA-X6-A7WC-01 17 48271338 48271338 C A COL1A1 Missense_Mutation p.G578V 0.42 unknown(0) TCGA-X6-A7WC-01 17 7577551 7577551 C T TP53 Missense_Mutation p.G244S 0.79 deleterious(0) probably_damaging(1) TCGA-X6-A7WC-01 18 14779966 14779966 G A ANKRD30B Missense_Mutation p.M476I 0.22 tolerated(0.18) benign(0.092) TCGA-X6-A7WC-01 18 2951057 2951057 C A LPIN2 Missense_Mutation p.A196S 0.10 tolerated(1) benign(0.001) TCGA-X6-A7WC-01 18 43844139 43844139 A G C18orf25 3'UTR 0.34 TCGA-X6-A7WC-01 18 45566623 45566623 T C ZBTB7C Missense_Mutation p.N286D 0.36 deleterious(0.01) benign(0.007) TCGA-X6-A7WC-01 19 11354301 11354301 G A DOCK6 Missense_Mutation p.T397M 0.19 deleterious(0) possibly_damaging(0.731) TCGA-X6-A7WC-01 19 1497632 1497632 C A REEP6 3'UTR 0.05 TCGA-X6-A7WC-01 19 288083 288083 G T PPAP2C Nonsense_Mutation p.Y68* 0.20 TCGA-X6-A7WC-01 19 33498977 33498977 C T RHPN2 Missense_Mutation p.D235N 0.18 tolerated(0.62) benign(0.001) TCGA-X6-A7WC-01 19 39051993 39051993 C T RYR1 Missense_Mutation p.P4175S 0.39 benign(0) TCGA-X6-A7WC-01 19 39915497 39915497 G T PLEKHG2 Missense_Mutation p.G1242C 0.18 deleterious_low_confidence(0.03) benign(0.06) TCGA-X6-A7WC-01 19 51537920 51537920 A G KLK12 Intron 0.22 TCGA-X6-A7WC-01 19 51629011 51629011 C A SIGLEC9 Silent p.T193T 0.59 TCGA-X6-A7WC-01 19 56421927 56421927 A G NLRP13 Splice_Site p.X761_splice 0.09 TCGA-X6-A7WC-01 19 6684798 6684798 T A C3 Missense_Mutation p.Q1339H 0.10 deleterious(0) possibly_damaging(0.763) TCGA-X6-A7WC-01 19 7267849 7267849 G A INSR Silent p.C53C 0.34 TCGA-X6-A7WC-01 1 113217542 113217542 G - MOV10 Frame_Shift_Del p.S3Ifs*59 0.17 TCGA-X6-A7WC-01 1 11577619 11577619 A T PTCHD2 Missense_Mutation p.S617C 0.21 deleterious(0.01) possibly_damaging(0.9) TCGA-X6-A7WC-01 1 151751364 151751364 T C TDRKH Missense_Mutation p.E227G 0.11 tolerated(0.16) benign(0.003) TCGA-X6-A7WC-01 1 152058678 152058678 C T TCHHL1 Missense_Mutation p.G494R 0.44 tolerated(0.19) benign(0.1) TCGA-X6-A7WC-01 1 152883319 152883319 A G IVL Missense_Mutation p.Q349R 0.10 deleterious(0.05) probably_damaging(0.997) TCGA-X6-A7WC-01 1 160718102 160718102 C A SLAMF7 Silent p.T58T 0.24 TCGA-X6-A7WC-01 1 160771614 160771614 C T LY9 Intron 0.21 TCGA-X6-A7WC-01 1 176526055 176526055 C A PAPPA2 Silent p.R199R 0.14 TCGA-X6-A7WC-01 1 202385935 202385935 G A PPP1R12B Silent p.L104L 0.21 TCGA-X6-A7WC-01 1 220273947 220273947 G T IARS2 Missense_Mutation p.G169V 0.59 deleterious(0.01) possibly_damaging(0.783) TCGA-X6-A7WC-01 1 22903293 22903293 G A EPHA8 Missense_Mutation p.S248N 0.08 tolerated(0.71) benign(0.355) TCGA-X6-A7WC-01 1 248367058 248367058 C T OR2M3 Missense_Mutation p.S230F 0.21 deleterious(0.02) benign(0.35) TCGA-X6-A7WC-01 1 2520961 2520961 G C FAM213B 3'UTR 0.23 TCGA-X6-A7WC-01 1 36319602 36319602 A G AGO4 3'UTR 0.56 TCGA-X6-A7WC-01 1 3679854 3679854 C A CCDC27 Missense_Mutation p.D379E 0.13 tolerated(1) benign(0.077) TCGA-X6-A7WC-01 1 55521749 55521749 C G PCSK9 Missense_Mutation p.R295G 0.08 deleterious(0.02) benign(0.432) TCGA-X6-A7WC-01 1 75683626 75683626 C A SLC44A5 Missense_Mutation p.A517S 0.06 deleterious(0) probably_damaging(0.994) TCGA-X6-A7WC-01 1 77042702 77042702 G C ST6GALNAC3 Intron 0.24 TCGA-X6-A7WC-01 20 35506417 35506417 C T TLDC2 Missense_Mutation p.T50I 0.32 tolerated(0.33) benign(0.008) TCGA-X6-A7WC-01 20 37547710 37547710 C A PPP1R16B 3'UTR 0.32 TCGA-X6-A7WC-01 21 10862982 10862982 C A IGHV1OR21-1 Missense_Mutation p.T93K 0.26 tolerated(0.59) benign(0.006) TCGA-X6-A7WC-01 21 41137760 41137760 T C IGSF5 Silent p.S133S 0.31 TCGA-X6-A7WC-01 22 19907112 19907112 C A TXNRD2 Silent p.L61L 0.13 TCGA-X6-A7WC-01 2 167313506 167313506 C A SCN7A Missense_Mutation p.L388F 0.42 deleterious(0) probably_damaging(1) TCGA-X6-A7WC-01 2 209358326 209358326 C T PTH2R Missense_Mutation p.P532L 0.12 tolerated(0.19) benign(0.002) TCGA-X6-A7WC-01 2 210595481 210595481 T G MAP2 3'UTR 0.14 TCGA-X6-A7WC-01 2 21234165 21234165 C A APOB Missense_Mutation p.V1859F 0.12 possibly_damaging(0.64) TCGA-X6-A7WC-01 2 234894490 234894490 C A TRPM8 Missense_Mutation p.L974M 0.24 deleterious(0) probably_damaging(1) TCGA-X6-A7WC-01 2 26818157 26818157 C T CIB4 Missense_Mutation p.R72K 0.22 tolerated(0.79) benign(0) TCGA-X6-A7WC-01 2 27722021 27722021 C A GCKR Silent p.A147A 0.07 TCGA-X6-A7WC-01 2 6989960 6989960 C T CMPK2 3'UTR 0.11 TCGA-X6-A7WC-01 3 97365050 97365050 G C EPHA6 Intron 0.21 TCGA-X6-A7WC-01 4 152097706 152097706 A C SH3D19 5'UTR 0.26 TCGA-X6-A7WC-01 4 189026036 189026036 A T TRIML2 Silent p.A30A 0.65 TCGA-X6-A7WC-01 4 40246120 40246120 T C RHOH 3'UTR 0.48 TCGA-X6-A7WC-01 4 41607964 41607964 C T LIMCH1 Silent p.Y143Y 0.14 TCGA-X6-A7WC-01 4 42445682 42445682 T C ATP8A1 Missense_Mutation p.H1008R 0.13 deleterious(0.03) benign(0.068) TCGA-X6-A7WC-01 4 46305540 46305540 C T GABRA2 Missense_Mutation p.V265I 0.29 deleterious(0) probably_damaging(0.94) TCGA-X6-A7WC-01 5 118469962 118469962 G T DMXL1 Splice_Site p.X752_splice 0.37 TCGA-X6-A7WC-01 5 1254600 1254600 C A TERT Missense_Mutation p.G1060C 0.04 deleterious(0) probably_damaging(0.999) TCGA-X6-A7WC-01 5 140236983 140236983 C T PCDHA10 Silent p.N450N 0.44 TCGA-X6-A7WC-01 5 140248722 140248722 C T PCDHA11 Missense_Mutation p.P12S 0.20 tolerated_low_confidence(0.5) benign(0) TCGA-X6-A7WC-01 5 141367352 141367352 C T RNF14 Silent p.D474D 0.07 TCGA-X6-A7WC-01 5 86690191 86690191 A T CCNH 3'UTR 0.31 TCGA-X6-A7WC-01 5 93752974 93752974 G A KIAA0825 Missense_Mutation p.T865I 0.14 tolerated(0.28) benign(0.014) TCGA-X6-A7WC-01 6 108192146 108192170 ATAAGCCACCAGTATCAGAAAACAT - SEC63 3'UTR 0.23 TCGA-X6-A7WC-01 6 131571588 131571588 C T AKAP7 Intron 0.28 TCGA-X6-A7WC-01 6 29141721 29141721 C T OR2J2 Silent p.Y103Y 0.24 TCGA-X6-A7WC-01 6 32188547 32188548 GG C NOTCH4 Frame_Shift_Del p.P303Efs*42 0.34 TCGA-X6-A7WC-01 6 43470514 43470528 AGGAGAGAGGTGGGG - TJAP1 Intron 0.24 TCGA-X6-A7WC-01 6 49936404 49936404 G A DEFB113 Missense_Mutation p.L79F 0.17 tolerated_low_confidence(0.25) benign(0.029) TCGA-X6-A7WC-01 6 50712831 50712831 C T TFAP2D Missense_Mutation p.H299Y 0.14 deleterious(0) probably_damaging(0.975) TCGA-X6-A7WC-01 6 96034835 96034835 A T MANEA Nonsense_Mutation p.R174* 0.26 TCGA-X6-A7WC-01 7 100283860 100283860 G A GIGYF1 Silent p.D297D 0.06 TCGA-X6-A7WC-01 7 127732374 127732374 T - SND1 3'UTR 0.13 TCGA-X6-A7WC-01 7 148921432 148921432 G T ZNF282 Missense_Mutation p.G570V 0.16 deleterious(0.01) probably_damaging(0.926) TCGA-X6-A7WC-01 7 151970791 151970791 T A KMT2C Missense_Mutation p.R337S 0.04 probably_damaging(0.997) TCGA-X6-A7WC-01 7 21784088 21784088 A G DNAH11 Silent p.K2736K 0.49 TCGA-X6-A7WC-01 7 21784177 21784177 T C DNAH11 Missense_Mutation p.F2766S 0.15 probably_damaging(1) TCGA-X6-A7WC-01 7 21788227 21788227 C A DNAH11 Missense_Mutation p.P2854H 0.11 probably_damaging(0.986) TCGA-X6-A7WC-01 7 40127771 40127771 A T CDK13 Nonsense_Mutation p.R1026* 0.38 TCGA-X6-A7WC-01 7 44269086 44269086 C A CAMK2B Missense_Mutation p.D414Y 0.09 deleterious_low_confidence(0.01) probably_damaging(0.92) TCGA-X6-A7WC-01 7 5161807 5161807 C T ZNF890P RNA 0.21 TCGA-X6-A7WC-01 7 6554123 6554123 G T GRID2IP Missense_Mutation p.L436M 0.14 deleterious(0) probably_damaging(0.998) TCGA-X6-A7WC-01 7 87174310 87174310 T G ABCB1 Silent p.A631A 0.19 TCGA-X6-A7WC-01 7 93112121 93112121 G A CALCR Intron 0.17 TCGA-X6-A7WC-01 8 110542393 110542393 G T PKHD1L1 3'UTR 0.23 TCGA-X6-A7WC-01 8 120886034 120886034 C T DEPTOR 5'UTR 0.48 TCGA-X6-A7WC-01 8 145700634 145700634 T G FOXH1 Missense_Mutation p.Q62P 0.20 tolerated(0.08) benign(0.133) TCGA-X6-A7WC-01 8 22077317 22077317 C A PHYHIP 3'UTR 0.43 TCGA-X6-A7WC-01 8 22447119 22447119 G A PDLIM2 Missense_Mutation p.E460K 0.35 deleterious(0.04) possibly_damaging(0.692) TCGA-X6-A7WC-01 8 55541829 55541829 C T RP1 Missense_Mutation p.T1796M 0.16 deleterious(0.03) possibly_damaging(0.742) TCGA-X6-A7WC-01 8 72211343 72211343 A G EYA1 Silent p.T255T 0.07 TCGA-X6-A7WC-01 9 103055210 103055249 ATTGACCTTCTCCCCGTAGAGCTCCGACTGCAGATAATTC - INVS Frame_Shift_Del p.I891Rfs*39 0.31 TCGA-X6-A7WC-01 9 109625563 109625563 G A ZNF462 5'UTR 0.22 TCGA-X6-A7WC-01 9 109625599 109625599 G A ZNF462 5'UTR 0.16 TCGA-X6-A7WC-01 9 130863607 130863607 G C SLC25A25 Missense_Mutation p.E136D 0.31 deleterious(0.03) possibly_damaging(0.703) TCGA-X6-A7WC-01 X 152614345 152614345 G T ZNF275 3'UTR 0.13 TCGA-X6-A7WC-01 X 49067930 49067930 C A CACNA1F Missense_Mutation p.G1382V 0.12 deleterious(0) benign(0.286) TCGA-X6-A7WC-01 X 76889149 76889159 TGCTGAAATCC - ATRX Frame_Shift_Del p.D1618Gfs*8 0.71 TCGA-X6-A7WD-01 10 127760055 127760055 C T ADAM12 Silent p.G441G 0.13 TCGA-X6-A7WD-01 10 21129758 21129758 C T NEBL Silent p.L416L 0.81 TCGA-X6-A7WD-01 10 75542276 75542276 C A CHCHD1 Intron 0.20 TCGA-X6-A7WD-01 11 105483056 105483056 A G GRIA4 Missense_Mutation p.I48V 0.42 tolerated(0.76) benign(0.03) TCGA-X6-A7WD-01 11 1856623 1856623 G A SYT8 Silent p.R78R 0.39 TCGA-X6-A7WD-01 11 27695856 27695856 G C BDNF 5'UTR 0.16 TCGA-X6-A7WD-01 11 56510853 56510853 C T OR9G4 Silent p.L145L 0.36 TCGA-X6-A7WD-01 11 57996303 57996303 C A OR10Q1 Missense_Mutation p.E15D 0.41 tolerated(0.06) benign(0.049) TCGA-X6-A7WD-01 11 59603420 59603420 T C GIF Missense_Mutation p.I312V 0.38 tolerated(0.1) possibly_damaging(0.854) TCGA-X6-A7WD-01 12 102161768 102161768 A C GNPTAB Intron 0.48 TCGA-X6-A7WD-01 12 102161854 102161856 TAC - GNPTAB In_Frame_Del p.C456_N457delinsY 0.35 TCGA-X6-A7WD-01 12 109182324 109182324 C T SSH1 Missense_Mutation p.A864T 0.53 tolerated_low_confidence(0.33) benign(0.003) TCGA-X6-A7WD-01 12 110770407 110770407 C A ATP2A2 Missense_Mutation p.F367L 0.38 tolerated(0.2) benign(0.036) TCGA-X6-A7WD-01 12 114836461 114836461 C T TBX5 Missense_Mutation p.A143T 0.39 deleterious(0) probably_damaging(0.958) TCGA-X6-A7WD-01 12 120942762 120942762 G A COQ5 Silent p.L236L 0.44 TCGA-X6-A7WD-01 12 124118392 124118392 G A GTF2H3 5'UTR 0.55 TCGA-X6-A7WD-01 12 133220026 133220026 G A POLE Missense_Mutation p.R1471C 0.45 tolerated(0.1) benign(0.009) TCGA-X6-A7WD-01 12 40925231 40925231 A T MUC19 Intron 0.33 TCGA-X6-A7WD-01 13 48955538 48955538 C T RB1 Nonsense_Mutation p.R552* 0.69 TCGA-X6-A7WD-01 14 24525877 24525877 C T LRRC16B Silent p.L304L 0.41 TCGA-X6-A7WD-01 14 24779656 24779656 G A CIDEB 5'UTR 0.35 TCGA-X6-A7WD-01 14 65214147 65214147 A G SPTB 3'UTR 0.48 TCGA-X6-A7WD-01 15 101609095 101609095 G A LRRK1 3'UTR 0.42 TCGA-X6-A7WD-01 15 26791655 26791655 C T GABRB3 3'UTR 0.43 TCGA-X6-A7WD-01 15 74702803 74702803 G A SEMA7A 3'UTR 0.08 TCGA-X6-A7WD-01 15 78873234 78873234 G A CHRNA5 Missense_Mutation p.R63H 0.43 deleterious(0) probably_damaging(1) TCGA-X6-A7WD-01 16 1270617 1270617 A T CACNA1H Missense_Mutation p.R2229W 0.55 deleterious(0) probably_damaging(0.919) TCGA-X6-A7WD-01 16 47533690 47533690 C G PHKB Missense_Mutation p.Q64E 0.35 deleterious(0) probably_damaging(0.923) TCGA-X6-A7WD-01 17 11515104 11515104 A G DNAH9 Intron 0.11 TCGA-X6-A7WD-01 17 21319618 21319618 C T KCNJ12 Silent p.L322L 0.03 TCGA-X6-A7WD-01 17 40913022 40913022 C T RAMP2 5'Flank 0.52 TCGA-X6-A7WD-01 17 53402323 53402323 G C HLF 3'UTR 0.08 TCGA-X6-A7WD-01 17 76027758 76027758 C T TNRC6C 5'UTR 0.52 TCGA-X6-A7WD-01 17 8661818 8661818 G A SPDYE4 5'UTR 0.10 TCGA-X6-A7WD-01 19 37975446 37975446 C A ZNF570 Silent p.R308R 0.42 TCGA-X6-A7WD-01 19 3939924 3939924 G A NMRK2 Missense_Mutation p.R117Q 0.22 deleterious(0.05) possibly_damaging(0.545) TCGA-X6-A7WD-01 19 7810620 7810620 C A CD209 Missense_Mutation p.A178S 0.39 tolerated(0.24) possibly_damaging(0.739) TCGA-X6-A7WD-01 1 150131553 150131553 G T PLEKHO1 Silent p.T355T 0.39 TCGA-X6-A7WD-01 1 166826144 166826144 A G TADA1 3'UTR 0.56 TCGA-X6-A7WD-01 1 44132716 44132716 A G KDM4A Missense_Mutation p.N290S 0.85 deleterious(0) benign(0.201) TCGA-X6-A7WD-01 21 40196550 40196550 T A ETS2 3'UTR 0.33 TCGA-X6-A7WD-01 21 46193533 46193533 C T UBE2G2 Missense_Mutation p.S105N 0.57 tolerated(0.38) benign(0.137) TCGA-X6-A7WD-01 22 29091748 29091748 C G CHEK2 Silent p.G446G 0.34 TCGA-X6-A7WD-01 2 152527713 152527713 A G NEB Silent p.L1444L 0.13 TCGA-X6-A7WD-01 2 179511230 179511230 C T TTN Missense_Mutation p.E13427K 0.44 TCGA-X6-A7WD-01 2 180348073 180348073 G T ZNF385B Missense_Mutation p.P199H 0.12 tolerated(0.12) benign(0.332) TCGA-X6-A7WD-01 2 204193117 204193117 C G ABI2 5'UTR 0.35 TCGA-X6-A7WD-01 2 238253180 238253180 A G COL6A3 Missense_Mutation p.V2494A 0.74 unknown(0) TCGA-X6-A7WD-01 2 54483161 54483161 C A TSPYL6 Missense_Mutation p.R43L 0.36 tolerated(0.07) benign(0.095) TCGA-X6-A7WD-01 2 65315079 65315089 ATTACAATATT C RAB1A 3'UTR 0.35 TCGA-X6-A7WD-01 3 136056232 136056232 G C STAG1 3'UTR 0.45 TCGA-X6-A7WD-01 3 193174850 193174850 G T ATP13A4 Missense_Mutation p.D618E 0.35 tolerated(0.43) benign(0.026) TCGA-X6-A7WD-01 3 71005925 71005925 A T FOXP1 3'Flank 0.12 TCGA-X6-A7WD-01 4 2074696 2074696 T G POLN Missense_Mutation p.Q839P 0.43 deleterious(0.02) probably_damaging(0.935) TCGA-X6-A7WD-01 5 1463892 1463892 C T LPCAT1 Silent p.P493P 0.15 TCGA-X6-A7WD-01 5 150028887 150028887 G A SYNPO Silent p.K594K 0.37 TCGA-X6-A7WD-01 6 111215574 111215574 C T AMD1 3'UTR 0.47 TCGA-X6-A7WD-01 6 168443353 168443353 G A KIF25 Silent p.P314P 0.43 TCGA-X6-A7WD-01 6 33133463 33133463 C T COL11A2 Missense_Mutation p.G1452E 0.14 unknown(0) TCGA-X6-A7WD-01 6 47681828 47681828 C T GPR115 Silent p.L283L 0.06 TCGA-X6-A7WD-01 6 89895101 89895101 G A GABRR1 Missense_Mutation p.R242W 0.39 deleterious(0) benign(0.178) TCGA-X6-A7WD-01 7 75956654 75956654 T A YWHAG 3'UTR 0.45 TCGA-X6-A7WD-01 7 87069600 87069600 T C ABCB4 Missense_Mutation p.Y492C 0.38 deleterious(0) benign(0.416) TCGA-X6-A7WD-01 7 92764827 92764827 T C SAMD9L Missense_Mutation p.K153R 0.07 tolerated(0.34) benign(0.047) TCGA-X6-A7WD-01 7 98249052 98249052 G A NPTX2 Missense_Mutation p.R175H 0.39 tolerated(0.22) benign(0.002) TCGA-X6-A7WD-01 8 133935689 133935689 C T TG Silent p.D1545D 0.15 TCGA-X6-A7WD-01 8 1954445 1954445 C T KBTBD11 3'UTR 0.09 TCGA-X6-A7WD-01 8 57353842 57353842 T C PENK Missense_Mutation p.M265V 0.37 deleterious(0) possibly_damaging(0.529) TCGA-X6-A7WD-01 8 61655261 61655261 G T CHD7 Missense_Mutation p.V424F 0.40 benign(0) TCGA-X6-A7WD-01 8 66701116 66701116 C T PDE7A Intron 0.50 TCGA-X6-A7WD-01 8 8235488 8235488 C G SGK223 Missense_Mutation p.G144A 0.42 benign(0.192) TCGA-X6-A7WD-01 9 135863692 135863692 G T GFI1B Missense_Mutation p.G116V 0.30 tolerated(0.47) benign(0.04) TCGA-X6-A7WD-01 X 76763007 76763007 G A ATRX 3'UTR 0.80 TCGA-X6-A7WD-01 X 96354765 96354765 C A DIAPH2 Missense_Mutation p.L774I 0.69 deleterious(0.01) possibly_damaging(0.869) TCGA-X6-A8C2-01 10 103901296 103901296 G T PPRC1 Missense_Mutation p.V1011F 0.50 deleterious_low_confidence(0.04) possibly_damaging(0.536) TCGA-X6-A8C2-01 10 32300365 32300365 T G KIF5B 3'UTR 0.70 TCGA-X6-A8C2-01 10 7262457 7262457 C A SFMBT2 Missense_Mutation p.A416S 0.12 deleterious(0.02) probably_damaging(0.909) TCGA-X6-A8C2-01 10 84745311 84745311 C A NRG3 Missense_Mutation p.Q681K 0.42 tolerated_low_confidence(0.11) benign(0.027) TCGA-X6-A8C2-01 11 298495 298495 A G IFITM5 3'UTR 0.14 TCGA-X6-A8C2-01 11 5536028 5536028 C A UBQLNL 3'UTR 0.29 TCGA-X6-A8C2-01 11 55659217 55659217 T C TRIM51 3'UTR 0.54 TCGA-X6-A8C2-01 11 58478144 58478144 G A GLYAT Missense_Mutation p.A136V 0.08 tolerated(0.66) benign(0.005) TCGA-X6-A8C2-01 11 7334914 7334914 C A SYT9 Silent p.I262I 0.26 TCGA-X6-A8C2-01 11 94758753 94758753 C T KDM4E Missense_Mutation p.T11M 0.17 deleterious(0) benign(0.34) TCGA-X6-A8C2-01 12 109845713 109845713 A G MYO1H Missense_Mutation p.N368D 0.31 tolerated(0.22) probably_damaging(0.999) TCGA-X6-A8C2-01 12 133808224 133808224 G T ANHX Missense_Mutation p.Q86K 0.15 tolerated(0.22) benign(0.007) TCGA-X6-A8C2-01 12 2927497 2927497 A G ITFG2 Intron 0.13 TCGA-X6-A8C2-01 12 4768200 4768200 A G NDUFA9 Splice_Site p.X137_splice 0.24 TCGA-X6-A8C2-01 12 4919850 4919850 T A KCNA6 Missense_Mutation p.S215T 0.15 tolerated(0.64) benign(0) TCGA-X6-A8C2-01 12 4919890 4919890 A T KCNA6 Missense_Mutation p.E228V 0.14 tolerated(0.26) benign(0.009) TCGA-X6-A8C2-01 12 54105115 54105115 T - CALCOCO1 3'Flank 0.45 TCGA-X6-A8C2-01 12 7480905 7480905 C A ACSM4 Missense_Mutation p.P560Q 0.27 deleterious(0) probably_damaging(0.998) TCGA-X6-A8C2-01 12 81777917 81777917 C A PPFIA2 Missense_Mutation p.R290L 0.30 deleterious(0.02) possibly_damaging(0.54) TCGA-X6-A8C2-01 12 96883406 96883406 C A C12orf55 Missense_Mutation p.P7T 0.20 tolerated_low_confidence(1) possibly_damaging(0.803) TCGA-X6-A8C2-01 13 42875991 42875991 A - AKAP11 Frame_Shift_Del p.K1037Rfs*9 0.19 TCGA-X6-A8C2-01 13 45957935 45957935 C A TPT1-AS1 Intron 0.15 TCGA-X6-A8C2-01 13 53048039 53048039 T C CKAP2 Missense_Mutation p.V542A 0.23 tolerated(0.24) benign(0.036) TCGA-X6-A8C2-01 13 61988024 61988024 A T PCDH20 Missense_Mutation p.Y70N 0.22 deleterious(0) probably_damaging(0.972) TCGA-X6-A8C2-01 13 84455804 84455804 C - SLITRK1 5'UTR 0.16 TCGA-X6-A8C2-01 14 64701829 64701829 C T ESR2 Missense_Mutation p.S422N 0.11 tolerated(0.08) benign(0.015) TCGA-X6-A8C2-01 14 70634157 70634157 G - SLC8A3 Frame_Shift_Del p.P328Qfs*5 0.24 TCGA-X6-A8C2-01 15 41989072 41989072 C G MGA Missense_Mutation p.L622V 0.30 tolerated(0.12) benign(0.04) TCGA-X6-A8C2-01 15 52338058 52338058 G C MAPK6 5'UTR 0.26 TCGA-X6-A8C2-01 15 52844135 52844135 C T ARPP19 Missense_Mutation p.G112D 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-X6-A8C2-01 15 57918073 57918073 G C GCOM1 Missense_Mutation p.D170H 0.33 tolerated(0.09) probably_damaging(0.976) TCGA-X6-A8C2-01 15 72292266 72292266 G T MYO9A Missense_Mutation p.L466I 0.15 deleterious(0) probably_damaging(0.954) TCGA-X6-A8C2-01 15 91456916 91456916 A G MAN2A2 Missense_Mutation p.I931V 0.15 deleterious(0.03) possibly_damaging(0.514) TCGA-X6-A8C2-01 16 12497352 12497352 G A SNX29 Missense_Mutation p.R668Q 0.15 tolerated(0.35) benign(0.108) TCGA-X6-A8C2-01 16 1464016 1464016 A G UNKL Missense_Mutation p.S40P 0.48 deleterious(0) benign(0.002) TCGA-X6-A8C2-01 16 14761590 14761590 A G BFAR Missense_Mutation p.N420S 0.34 tolerated(0.09) benign(0.035) TCGA-X6-A8C2-01 16 23197815 23197815 G A SCNN1G Missense_Mutation p.V75I 0.38 tolerated(1) benign(0.007) TCGA-X6-A8C2-01 16 68849442 68849442 C A CDH1 Missense_Mutation p.Q449K 0.16 tolerated(0.45) benign(0.012) TCGA-X6-A8C2-01 17 17719281 17719281 G T SREBF1 Missense_Mutation p.A789D 0.30 deleterious(0) possibly_damaging(0.899) TCGA-X6-A8C2-01 17 20770013 20770013 G A CCDC144NL Missense_Mutation p.A140V 0.20 tolerated_low_confidence(0.14) benign(0.001) TCGA-X6-A8C2-01 17 41930355 41930355 C A CD300LG Missense_Mutation p.A152D 0.36 deleterious(0.01) benign(0.422) TCGA-X6-A8C2-01 17 48594960 48594960 C T MYCBPAP Silent p.P166P 0.30 TCGA-X6-A8C2-01 17 66246341 66246341 C T AMZ2 Missense_Mutation p.R5W 0.09 deleterious(0) possibly_damaging(0.677) TCGA-X6-A8C2-01 17 7187547 7187547 G A SLC2A4 Silent p.L192L 0.22 TCGA-X6-A8C2-01 17 7577134 7577137 GTTC TAT TP53 Frame_Shift_Del p.N268* 0.90 TCGA-X6-A8C2-01 17 80042811 80042811 G C FASN Missense_Mutation p.N1476K 0.16 tolerated(0.1) benign(0.15) TCGA-X6-A8C2-01 18 22806657 22806657 A T ZNF521 Missense_Mutation p.Y409N 0.33 deleterious(0) probably_damaging(0.972) TCGA-X6-A8C2-01 18 59947038 59947038 T C KIAA1468 Intron 0.34 TCGA-X6-A8C2-01 19 15271540 15271540 A T NOTCH3 Missense_Mutation p.L2300H 0.22 tolerated(0.08) possibly_damaging(0.819) TCGA-X6-A8C2-01 19 39281369 39281369 G A LGALS7B Missense_Mutation p.D46N 0.12 tolerated(0.05) benign(0.288) TCGA-X6-A8C2-01 19 47217293 47217293 G C PRKD2 Intron 0.14 TCGA-X6-A8C2-01 19 50949209 50949209 G A MYBPC2 Silent p.K402K 0.46 TCGA-X6-A8C2-01 19 51015485 51015485 C T ASPDH Missense_Mutation p.S239N 0.18 tolerated(0.47) benign(0.006) TCGA-X6-A8C2-01 1 111772380 111772380 G C CHI3L2 Intron 0.25 TCGA-X6-A8C2-01 1 12460261 12460261 C T VPS13D Silent p.T3886T 0.10 TCGA-X6-A8C2-01 1 160549203 160549203 A G CD84 Silent p.L9L 0.27 TCGA-X6-A8C2-01 1 162740137 162740137 C T DDR2 Silent p.L447L 0.12 TCGA-X6-A8C2-01 1 163038643 163038643 A G RGS4 5'UTR 0.64 TCGA-X6-A8C2-01 1 201190739 201190739 G A IGFN1 Missense_Mutation p.V3356M 0.78 possibly_damaging(0.858) TCGA-X6-A8C2-01 1 216062047 216062047 G T USH2A Silent p.T2648T 0.24 TCGA-X6-A8C2-01 1 228560166 228560166 G A OBSCN Silent p.R8186R 0.21 TCGA-X6-A8C2-01 1 27333264 27333264 C T FAM46B Missense_Mutation p.C150Y 0.10 deleterious(0) probably_damaging(0.998) TCGA-X6-A8C2-01 1 54610408 54610408 T G CDCP2 Missense_Mutation p.N53T 0.27 deleterious(0.03) possibly_damaging(0.665) TCGA-X6-A8C2-01 1 56960816 56960817 - TTA PPAP2B 3'UTR 0.09 TCGA-X6-A8C2-01 1 63789443 63789443 G C FOXD3 Missense_Mutation p.K238N 0.45 deleterious(0.01) possibly_damaging(0.452) TCGA-X6-A8C2-01 1 8418827 8418827 C A RERE Silent p.L1256L 0.06 TCGA-X6-A8C2-01 1 89618012 89618012 C A GBP7 Missense_Mutation p.K188N 0.25 tolerated(0.05) benign(0.061) TCGA-X6-A8C2-01 1 9070297 9070297 G - SLC2A7 Frame_Shift_Del p.V342Wfs*24 0.26 TCGA-X6-A8C2-01 20 37380900 37380900 G C ACTR5 Missense_Mutation p.E244D 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-X6-A8C2-01 20 48122402 48122402 G C PTGIS 3'UTR 0.17 TCGA-X6-A8C2-01 20 51872532 51872539 GTCCAACT - TSHZ2 Frame_Shift_Del p.S846Efs*28 0.33 TCGA-X6-A8C2-01 21 15678164 15678164 G A ABCC13 3'Flank 0.32 TCGA-X6-A8C2-01 22 43010890 43010890 A T POLDIP3 5'UTR 0.39 TCGA-X6-A8C2-01 22 50988630 50988630 T C KLHDC7B 3'UTR 0.38 TCGA-X6-A8C2-01 22 50988918 50988918 C A KLHDC7B 3'UTR 0.62 TCGA-X6-A8C2-01 2 131803760 131803760 T C ARHGEF4 Nonstop_Mutation p.*691Rext*91 0.31 TCGA-X6-A8C2-01 2 145157714 145157715 TT - ZEB2 Frame_Shift_Del p.N347Yfs*8 0.18 TCGA-X6-A8C2-01 2 180835458 180835458 C T CWC22 Missense_Mutation p.G356S 0.37 tolerated(0.06) benign(0.094) TCGA-X6-A8C2-01 2 206869018 206869018 G A INO80D 3'UTR 0.39 TCGA-X6-A8C2-01 2 21247913 21247913 G T APOB Nonsense_Mutation p.Y776* 0.31 TCGA-X6-A8C2-01 2 60997608 60997608 T A PAPOLG Missense_Mutation p.F152I 0.26 deleterious(0) possibly_damaging(0.678) TCGA-X6-A8C2-01 3 111630459 111630459 A G PHLDB2 Intron 0.05 TCGA-X6-A8C2-01 3 130282278 130282278 A T COL6A6 Missense_Mutation p.E144V 0.17 deleterious(0.03) probably_damaging(0.938) TCGA-X6-A8C2-01 3 148749459 148749459 G T HLTF 3'UTR 0.18 TCGA-X6-A8C2-01 3 148928119 148928119 T A CP Nonsense_Mutation p.K148* 0.34 TCGA-X6-A8C2-01 3 53700511 53700511 T C CACNA1D Silent p.L355L 0.23 TCGA-X6-A8C2-01 3 69230187 69230187 C A FRMD4B Missense_Mutation p.R905L 0.32 deleterious(0) probably_damaging(0.998) TCGA-X6-A8C2-01 4 100867868 100867868 G A DNAJB14 5'UTR 0.20 TCGA-X6-A8C2-01 4 55605550 55605550 G A KIT 3'UTR 0.29 TCGA-X6-A8C2-01 4 55605745 55605745 G A KIT 3'UTR 0.27 TCGA-X6-A8C2-01 4 83719786 83719786 G T SCD5 5'UTR 0.17 TCGA-X6-A8C2-01 5 112871433 112871433 C A YTHDC2 Missense_Mutation p.S347Y 0.33 deleterious(0.03) probably_damaging(0.986) TCGA-X6-A8C2-01 5 1293552 1293552 G A TERT Silent p.N483N 0.32 TCGA-X6-A8C2-01 5 149324341 149324341 G T PDE6A 5'UTR 0.17 TCGA-X6-A8C2-01 5 180582647 180582647 G A OR2V2 Nonsense_Mutation p.W235* 0.42 TCGA-X6-A8C2-01 5 21751881 21751881 C T CDH12 Missense_Mutation p.E784K 0.73 tolerated(0.87) benign(0.009) TCGA-X6-A8C2-01 5 35694446 35694447 AG - SPEF2 Frame_Shift_Del p.E653Rfs*2 0.09 TCGA-X6-A8C2-01 5 56215531 56215531 A C MIER3 3'UTR 0.33 TCGA-X6-A8C2-01 5 66254867 66254867 G T MAST4 Intron 0.22 TCGA-X6-A8C2-01 5 85578685 85578685 G C NBPF22P RNA 0.23 TCGA-X6-A8C2-01 6 130762280 130762280 G C TMEM200A Missense_Mutation p.S238T 0.25 tolerated(0.62) benign(0.001) TCGA-X6-A8C2-01 6 132781974 132781974 T - STX7 Frame_Shift_Del p.T237Pfs*23 0.16 TCGA-X6-A8C2-01 6 4074687 4074687 T C FAM217A Missense_Mutation p.K50R 0.07 tolerated(0.08) benign(0.128) TCGA-X6-A8C2-01 6 90045027 90045027 G T UBE2J1 Missense_Mutation p.S184R 0.20 tolerated(0.11) benign(0.021) TCGA-X6-A8C2-01 6 99979765 99979765 C T TSTD3 RNA 0.17 TCGA-X6-A8C2-01 7 100459181 100459192 TCAGCCAGGCCT - SLC12A9 In_Frame_Del p.S505_L508del 0.56 TCGA-X6-A8C2-01 7 156994425 156994425 A T UBE3C Missense_Mutation p.S448C 0.27 tolerated(0.05) probably_damaging(0.94) TCGA-X6-A8C2-01 7 20451988 20451988 G A ITGB8 3'UTR 0.52 TCGA-X6-A8C2-01 7 93054119 93054119 C T CALCR 3'UTR 0.32 TCGA-X6-A8C2-01 8 139611094 139611094 G A COL22A1 Silent p.G1411G 0.09 TCGA-X6-A8C2-01 8 25337454 25337454 G A CDCA2 Silent p.V282V 0.48 TCGA-X6-A8C2-01 8 38793524 38793524 G C PLEKHA2 Missense_Mutation p.G52R 0.74 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C2-01 9 102626494 102626494 C G NR4A3 3'UTR 0.23 TCGA-X6-A8C2-01 9 115806243 115806243 T C ZFP37 Missense_Mutation p.T219A 0.42 tolerated(0.18) benign(0.009) TCGA-X6-A8C2-01 9 133308939 133308939 G A HMCN2 Silent p.P743P 0.11 TCGA-X6-A8C2-01 9 137020864 137020864 C T WDR5 Missense_Mutation p.A264V 0.08 tolerated(0.07) benign(0.267) TCGA-X6-A8C2-01 9 21440957 21440957 A T IFNA1 Missense_Mutation p.T151S 0.43 tolerated(0.4) benign(0.003) TCGA-X6-A8C2-01 9 78710840 78710840 C T PCSK5 Missense_Mutation p.A310V 0.21 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C2-01 X 100604741 100604741 G T BTK 3'UTR 0.15 TCGA-X6-A8C2-01 X 18259309 18259309 T C SCML2 3'UTR 0.37 TCGA-X6-A8C3-01 10 105049433 105049433 T A INA 3'UTR 0.38 TCGA-X6-A8C3-01 10 116093020 116093020 C T AFAP1L2 Silent p.V60V 0.17 TCGA-X6-A8C3-01 10 118897354 118897354 C A VAX1 Missense_Mutation p.D72Y 0.42 deleterious(0) unknown(0) TCGA-X6-A8C3-01 10 129907069 129907069 G T MKI67 Missense_Mutation p.P1012Q 0.24 deleterious(0.02) possibly_damaging(0.643) TCGA-X6-A8C3-01 10 33165274 33165274 G T C10ORF68 Splice_Site p.X614_splice 0.42 TCGA-X6-A8C3-01 10 7618800 7618800 C T ITIH5 Missense_Mutation p.A532T 0.46 deleterious(0) probably_damaging(1) TCGA-X6-A8C3-01 10 94818485 94818485 C T EXOC6 3'UTR 0.15 TCGA-X6-A8C3-01 10 97607265 97607265 C G ENTPD1 Missense_Mutation p.N304K 0.26 tolerated(0.14) benign(0.086) TCGA-X6-A8C3-01 11 22400006 22400006 C T SLC17A6 3'UTR 0.63 TCGA-X6-A8C3-01 11 5535955 5535955 A G UBQLNL 3'UTR 0.30 TCGA-X6-A8C3-01 11 66460047 66460047 G A SPTBN2 Missense_Mutation p.A1717V 0.59 deleterious(0) probably_damaging(0.994) TCGA-X6-A8C3-01 11 93806290 93806290 A G HEPHL1 Silent p.R444R 0.17 TCGA-X6-A8C3-01 12 112110525 112110525 T A BRAP Silent p.I229I 0.21 TCGA-X6-A8C3-01 12 122247688 122247688 G A SETD1B Silent p.L279L 0.18 TCGA-X6-A8C3-01 12 126139120 126139120 C A TMEM132B Missense_Mutation p.P1034Q 0.19 deleterious(0) probably_damaging(1) TCGA-X6-A8C3-01 12 133780214 133780214 G A ZNF268 Missense_Mutation p.A648T 0.11 tolerated(0.13) possibly_damaging(0.771) TCGA-X6-A8C3-01 12 2602406 2602406 G A CACNA1C Missense_Mutation p.G323R 0.13 deleterious(0) benign(0.028) TCGA-X6-A8C3-01 12 40692941 40692941 G A LRRK2 Silent p.L1126L 0.11 TCGA-X6-A8C3-01 12 40692977 40692977 G A LRRK2 Silent p.K1138K 0.13 TCGA-X6-A8C3-01 12 40693045 40693045 G A LRRK2 Missense_Mutation p.R1161K 0.12 tolerated(0.37) benign(0.003) TCGA-X6-A8C3-01 12 40693049 40693049 G A LRRK2 Missense_Mutation p.M1162I 0.13 tolerated(0.55) benign(0.001) TCGA-X6-A8C3-01 12 44783026 44783026 A G TMEM117 3'UTR 0.32 TCGA-X6-A8C3-01 12 70330306 70330306 G A MYRFL Silent p.P71P 0.13 TCGA-X6-A8C3-01 12 7077684 7077684 G A PHB2 Missense_Mutation p.R123C 0.17 deleterious(0.02) possibly_damaging(0.773) TCGA-X6-A8C3-01 12 88442740 88442740 G T C12orf29 3'UTR 0.14 TCGA-X6-A8C3-01 13 23853610 23853610 A T SGCG Silent p.R166R 0.15 TCGA-X6-A8C3-01 14 21558872 21558872 G T ZNF219 Missense_Mutation p.H664Q 0.13 deleterious(0) probably_damaging(0.985) TCGA-X6-A8C3-01 15 39882082 39882082 A C THBS1 Missense_Mutation p.H668P 0.29 tolerated(0.2) benign(0.104) TCGA-X6-A8C3-01 15 43568678 43568678 A G TGM7 Missense_Mutation p.F703S 0.38 tolerated(0.15) possibly_damaging(0.702) TCGA-X6-A8C3-01 15 43622562 43622562 A T LCMT2 Silent p.V42V 0.17 TCGA-X6-A8C3-01 15 62538270 62538270 T C AC126323.1 5'Flank 0.11 TCGA-X6-A8C3-01 15 79277345 79277345 G A RASGRF1 Intron 0.18 TCGA-X6-A8C3-01 16 1557606 1557606 G A TELO2 Missense_Mutation p.V766M 0.08 deleterious(0.01) possibly_damaging(0.849) TCGA-X6-A8C3-01 16 227413 227413 T G HBA1 3'UTR 0.19 TCGA-X6-A8C3-01 16 48265911 48265911 T C ABCC11 5'UTR 0.12 TCGA-X6-A8C3-01 16 50342240 50342240 C T ADCY7 Missense_Mutation p.T618M 0.16 tolerated(0.21) benign(0.005) TCGA-X6-A8C3-01 16 56914083 56914083 C T SLC12A3 Silent p.F495F 0.41 TCGA-X6-A8C3-01 16 58568140 58568140 G A CNOT1 Silent p.L1936L 0.10 TCGA-X6-A8C3-01 16 67981265 67981265 C T SLC12A4 Missense_Mutation p.E683K 0.33 deleterious(0) possibly_damaging(0.73) TCGA-X6-A8C3-01 16 7637263 7637263 C T RBFOX1 Silent p.I163I 0.17 TCGA-X6-A8C3-01 16 79631729 79631729 C A MAF Intron 0.09 TCGA-X6-A8C3-01 17 10411236 10411236 A T MYH1 Silent p.G645G 0.13 TCGA-X6-A8C3-01 17 62893397 62893397 G A LRRC37A3 5'UTR 0.19 TCGA-X6-A8C3-01 17 7330144 7330144 G A C17orf74 Silent p.S278S 0.19 TCGA-X6-A8C3-01 18 346619 346619 G A COLEC12 Missense_Mutation p.R335C 0.10 deleterious(0) possibly_damaging(0.898) TCGA-X6-A8C3-01 18 46163008 46163008 G A CTIF Silent p.P68P 0.26 TCGA-X6-A8C3-01 19 12975906 12975906 C T MAST1 Missense_Mutation p.L518F 0.15 deleterious(0) probably_damaging(0.989) TCGA-X6-A8C3-01 19 38633272 38633272 C T SIPA1L3 Missense_Mutation p.P1152L 0.41 tolerated(0.59) benign(0.001) TCGA-X6-A8C3-01 19 40538222 40538222 A T ZNF780B 3'UTR 0.15 TCGA-X6-A8C3-01 19 51017820 51017820 C T ASPDH 5'Flank 0.18 TCGA-X6-A8C3-01 19 52941698 52941698 A G ZNF534 Missense_Mutation p.K342E 0.08 tolerated(0.24) benign(0.018) TCGA-X6-A8C3-01 19 55494429 55494429 G A NLRP2 Missense_Mutation p.A455T 0.19 deleterious(0.03) benign(0.271) TCGA-X6-A8C3-01 1 117146496 117146496 G T IGSF3 Missense_Mutation p.S478R 0.23 tolerated(0.1) benign(0.101) TCGA-X6-A8C3-01 1 171753532 171753532 C T METTL13 Missense_Mutation p.S269F 0.22 deleterious(0.04) benign(0.041) TCGA-X6-A8C3-01 1 180471380 180471380 C T ACBD6 Missense_Mutation p.A8T 0.16 tolerated_low_confidence(0.14) benign(0.004) TCGA-X6-A8C3-01 1 223285748 223285748 T C TLR5 Missense_Mutation p.Y209C 0.24 deleterious(0) probably_damaging(0.925) TCGA-X6-A8C3-01 1 235643459 235643459 G A B3GALNT2 Missense_Mutation p.L188F 0.25 deleterious(0.01) possibly_damaging(0.883) TCGA-X6-A8C3-01 1 44054430 44054430 C T PTPRF Silent p.I236I 0.22 TCGA-X6-A8C3-01 1 47883217 47883217 G A FOXE3 3'UTR 0.27 TCGA-X6-A8C3-01 1 57425757 57425757 G A C8B Missense_Mutation p.P62L 0.31 deleterious(0.01) possibly_damaging(0.833) TCGA-X6-A8C3-01 1 90180397 90180397 C G LRRC8C Nonsense_Mutation p.Y756* 0.35 TCGA-X6-A8C3-01 2 124999855 124999855 C T CNTNAP5 Missense_Mutation p.T89I 0.51 deleterious(0) possibly_damaging(0.511) TCGA-X6-A8C3-01 2 176984179 176984194 ATATATATATATATAA - HOXD10 3'UTR 0.10 TCGA-X6-A8C3-01 2 213871035 213871035 A G IKZF2 3'UTR 0.11 TCGA-X6-A8C3-01 2 42522363 42522363 C T EML4 Silent p.S439S 0.32 TCGA-X6-A8C3-01 2 74442410 74442410 G T MTHFD2 3'UTR 0.17 TCGA-X6-A8C3-01 2 98206234 98206234 G C ANKRD36B RNA 0.07 TCGA-X6-A8C3-01 3 12875729 12875729 G T CAND2 3'UTR 0.17 TCGA-X6-A8C3-01 3 53857739 53857739 G A CHDH Silent p.C99C 0.27 TCGA-X6-A8C3-01 3 74413736 74413736 C A CNTN3 Missense_Mutation p.Q365H 0.14 tolerated(0.18) probably_damaging(0.947) TCGA-X6-A8C3-01 4 104003299 104003299 G T BDH2 Missense_Mutation p.T208K 0.50 deleterious(0) benign(0.092) TCGA-X6-A8C3-01 4 113303659 113303659 A G ALPK1 Missense_Mutation p.D76G 0.12 deleterious(0) probably_damaging(1) TCGA-X6-A8C3-01 5 135188287 135188287 C T SLC25A48 Silent p.L66L 0.26 TCGA-X6-A8C3-01 5 139222367 139222367 G T PSD2 3'UTR 0.26 TCGA-X6-A8C3-01 5 74696029 74696029 C A COL4A3BP Splice_Site p.X498_splice 0.12 TCGA-X6-A8C3-01 6 136934374 136934374 G A MAP3K5 Missense_Mutation p.R767C 0.10 deleterious(0) possibly_damaging(0.838) TCGA-X6-A8C3-01 6 170070759 170070759 G A WDR27 Missense_Mutation p.S121L 0.23 deleterious(0) benign(0.11) TCGA-X6-A8C3-01 6 32823978 32823978 G T PSMB9 Missense_Mutation p.A42S 0.15 tolerated(0.18) probably_damaging(0.943) TCGA-X6-A8C3-01 6 80228675 80228675 A C LCA5 5'UTR 0.35 TCGA-X6-A8C3-01 7 24784186 24784186 G A DFNA5 Silent p.A133A 0.41 TCGA-X6-A8C3-01 7 28864834 28864834 A G CREB5 3'UTR 0.47 TCGA-X6-A8C3-01 7 31377812 31377812 C T NEUROD6 3'UTR 0.16 TCGA-X6-A8C3-01 7 57188073 57188073 T C ZNF479 Missense_Mutation p.E350G 0.16 deleterious(0.01) probably_damaging(1) TCGA-X6-A8C3-01 8 10986462 10986462 A C AF131215.5 Missense_Mutation p.L31R 0.21 possibly_damaging(0.887) TCGA-X6-A8C3-01 8 145583332 145583332 G - SLC52A2 Frame_Shift_Del p.G61Vfs*5 0.16 TCGA-X6-A8C3-01 8 61654811 61654811 A G CHD7 Missense_Mutation p.R274G 0.10 benign(0.152) TCGA-X6-A8C3-01 9 87342760 87342761 - ATA NTRK2 In_Frame_Ins p.N350dup 0.33 TCGA-X6-A8C3-01 X 106171471 106171471 G A CLDN2 Missense_Mutation p.G5S 0.25 tolerated(0.1) unknown(0) TCGA-X6-A8C3-01 X 107924118 107924118 T A COL4A5 Missense_Mutation p.M1340K 0.32 benign(0.371) TCGA-X6-A8C3-01 X 139796000 139796000 C - LINC00632 3'UTR 0.19 TCGA-X6-A8C3-01 X 150891283 150891283 T C FATE1 3'UTR 0.15 TCGA-X6-A8C3-01 X 31200986 31200986 G T DMD Missense_Mutation p.F3281L 0.38 possibly_damaging(0.458) TCGA-X6-A8C3-01 X 48886705 48886705 C T TFE3 3'UTR 0.30 TCGA-X6-A8C3-01 X 6451798 6451798 T C VCX3A Silent p.L183L 0.04 TCGA-X6-A8C4-01 10 123238001 123238001 C T FGFR2 3'Flank 0.11 TCGA-X6-A8C4-01 10 89167263 89167263 C A LINC00864 RNA 0.11 TCGA-X6-A8C4-01 11 104868114 104868114 C T CASP5 Missense_Mutation p.R414Q 0.48 tolerated(0.31) benign(0.163) TCGA-X6-A8C4-01 11 118376882 118376882 G A KMT2A Silent p.A3425A 0.94 TCGA-X6-A8C4-01 11 125763653 125763653 T C PUS3 3'UTR 0.32 TCGA-X6-A8C4-01 12 118541533 118541533 C G VSIG10 5'UTR 0.22 TCGA-X6-A8C4-01 12 130521460 130521460 A C RP11-474D1.3 RNA 0.23 TCGA-X6-A8C4-01 12 130851778 130851778 G A PIWIL1 Missense_Mutation p.D766N 0.25 deleterious(0) probably_damaging(0.989) TCGA-X6-A8C4-01 12 52844289 52844289 T C KRT6B Missense_Mutation p.N219S 0.16 tolerated(0.73) benign(0.206) TCGA-X6-A8C4-01 12 54369658 54369658 G A HOXC11 3'UTR 0.72 TCGA-X6-A8C4-01 12 6883914 6883914 C T LAG3 Missense_Mutation p.A222V 0.34 tolerated(0.28) benign(0.027) TCGA-X6-A8C4-01 13 20567661 20567661 C A ZMYM2 Missense_Mutation p.T150N 0.39 tolerated_low_confidence(0.08) benign(0.007) TCGA-X6-A8C4-01 14 20848393 20848393 C G TEP1 Splice_Site p.X1668_splice 0.58 TCGA-X6-A8C4-01 14 25043934 25043934 G A CTSG Missense_Mutation p.R96C 0.87 deleterious(0.04) benign(0.032) TCGA-X6-A8C4-01 14 64935948 64935948 A G AKAP5 Missense_Mutation p.E279G 0.89 tolerated(0.16) benign(0.004) TCGA-X6-A8C4-01 14 69707775 69707775 G A EXD2 Silent p.L608L 0.25 TCGA-X6-A8C4-01 14 94103628 94103628 A G UNC79 Missense_Mutation p.Q1790R 0.25 tolerated_low_confidence(0.53) benign(0.001) TCGA-X6-A8C4-01 14 94400824 94400824 G A ASB2 3'UTR 0.24 TCGA-X6-A8C4-01 15 76467986 76467986 A T C15orf27 Missense_Mutation p.R247W 0.15 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C4-01 15 90378806 90378806 G A C15orf38-AP3S2 Missense_Mutation p.R376W 0.13 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-X6-A8C4-01 16 30537359 30537359 C G ZNF768 Missense_Mutation p.E34D 0.34 tolerated_low_confidence(0.09) benign(0) TCGA-X6-A8C4-01 16 55362613 55362613 A C IRX6 Missense_Mutation p.E241D 0.55 tolerated(1) benign(0) TCGA-X6-A8C4-01 16 77398240 77398240 A G ADAMTS18 Missense_Mutation p.F273L 0.31 tolerated(0.75) benign(0.001) TCGA-X6-A8C4-01 17 16722363 16722363 G A AC022596.6 RNA 0.21 TCGA-X6-A8C4-01 17 3101480 3101480 C G OR1A2 Missense_Mutation p.T223R 0.45 deleterious(0.02) possibly_damaging(0.908) TCGA-X6-A8C4-01 17 41957293 41957293 G A MPP2 Missense_Mutation p.R404C 0.21 deleterious(0) probably_damaging(1) TCGA-X6-A8C4-01 17 48067550 48067550 C T DLX3 3'UTR 0.27 TCGA-X6-A8C4-01 17 48068139 48068139 C T DLX3 3'UTR 0.25 TCGA-X6-A8C4-01 17 48068745 48068745 C G DLX3 3'UTR 0.30 TCGA-X6-A8C4-01 17 48070845 48070845 C T DLX3 Silent p.Q145Q 0.20 TCGA-X6-A8C4-01 17 5071226 5071226 G A USP6 Splice_Site p.X1013_splice 0.47 TCGA-X6-A8C4-01 19 1105242 1105242 G C GPX4 Missense_Mutation p.D48H 0.88 deleterious(0) probably_damaging(0.944) TCGA-X6-A8C4-01 19 19735363 19735363 C T LPAR2 Missense_Mutation p.C253Y 0.14 deleterious(0) probably_damaging(0.968) TCGA-X6-A8C4-01 19 3760290 3760290 C T APBA3 5'UTR 0.94 TCGA-X6-A8C4-01 19 47177859 47177859 G A PRKD2 Missense_Mutation p.T853M 0.12 tolerated_low_confidence(0.11) benign(0.051) TCGA-X6-A8C4-01 19 50985746 50985764 GGCCCCATGCAGCCCCAGG - EMC10 3'UTR 0.76 TCGA-X6-A8C4-01 19 54299150 54299150 G A NLRP12 Missense_Mutation p.R1021W 0.45 deleterious(0.01) unknown(0) TCGA-X6-A8C4-01 19 56273241 56273241 A T RFPL4A Missense_Mutation p.K25N 0.39 tolerated(0.06) benign(0.167) TCGA-X6-A8C4-01 19 9024855 9024855 G A MUC16 Missense_Mutation p.T12336I 0.21 probably_damaging(0.948) TCGA-X6-A8C4-01 1 119575715 119575715 C T WARS2 Missense_Mutation p.R301H 0.34 tolerated(0.42) benign(0.003) TCGA-X6-A8C4-01 1 152127868 152127868 A G RPTN Silent p.Y569Y 0.10 TCGA-X6-A8C4-01 1 152282747 152282747 T G FLG Missense_Mutation p.S1539R 0.18 benign(0.307) TCGA-X6-A8C4-01 1 158735723 158735723 G A OR6N1 Silent p.I250I 0.50 TCGA-X6-A8C4-01 1 159175905 159175905 T G DARC Missense_Mutation p.F228V 0.15 tolerated(0.23) benign(0.007) TCGA-X6-A8C4-01 1 160465892 160465892 T C SLAMF6 Missense_Mutation p.K114R 0.15 tolerated(0.41) benign(0.005) TCGA-X6-A8C4-01 1 162351773 162351773 C G RP11-565P22.6 Missense_Mutation p.P137A 0.07 tolerated(0.24) benign(0.024) TCGA-X6-A8C4-01 1 166974327 166974327 C T MAEL Silent p.T221T 0.09 TCGA-X6-A8C4-01 1 168211845 168211845 T C SFT2D2 3'UTR 0.10 TCGA-X6-A8C4-01 1 186282866 186282866 C A PRG4 Missense_Mutation p.R1391S 0.57 unknown(0) TCGA-X6-A8C4-01 1 45296673 45296673 C G PTCH2 Missense_Mutation p.Q220H 0.70 deleterious(0.03) benign(0.289) TCGA-X6-A8C4-01 1 67896041 67896041 A T SERBP1 5'UTR 0.47 TCGA-X6-A8C4-01 20 1288459 1288459 G A SNPH 3'UTR 1.00 TCGA-X6-A8C4-01 20 57829841 57829841 C T ZNF831 3'UTR 0.27 TCGA-X6-A8C4-01 21 11047523 11047523 T C BAGE2 RNA 0.14 TCGA-X6-A8C4-01 21 22370798 22370798 G T NCAM2 5'UTR 0.22 TCGA-X6-A8C4-01 22 17443672 17443672 T C GAB4 Missense_Mutation p.Q559R 0.81 deleterious(0) benign(0.403) TCGA-X6-A8C4-01 22 45258437 45258437 C A PRR5-ARHGAP8 Missense_Mutation p.P632T 0.24 deleterious_low_confidence(0.02) unknown(0) TCGA-X6-A8C4-01 22 50705444 50705444 C T MAPK11 Missense_Mutation p.E177K 0.17 tolerated(0.54) benign(0.075) TCGA-X6-A8C4-01 2 108604789 108604789 G T SLC5A7 Missense_Mutation p.A60S 0.41 tolerated(0.06) probably_damaging(0.979) TCGA-X6-A8C4-01 2 137917905 137917905 C A THSD7B Missense_Mutation p.H498N 0.75 tolerated(0.12) benign(0.216) TCGA-X6-A8C4-01 2 171056780 171056780 T C MYO3B Missense_Mutation p.W103R 0.33 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C4-01 2 21242592 21242592 A T APOB Intron 0.71 TCGA-X6-A8C4-01 2 233350833 233350833 C T ECEL1 Silent p.Q177Q 0.67 TCGA-X6-A8C4-01 2 32526542 32526542 A G YIPF4 Missense_Mutation p.E192G 0.17 tolerated(0.1) benign(0.252) TCGA-X6-A8C4-01 2 56403230 56403230 T C RP11-481J13.1 Intron 0.28 TCGA-X6-A8C4-01 2 75745210 75745210 G A EVA1A Silent p.N19N 0.23 TCGA-X6-A8C4-01 3 184063187 184063187 C A FAM131A 3'Flank 0.11 TCGA-X6-A8C4-01 3 42916302 42916302 T C CYP8B1 Missense_Mutation p.H336R 0.22 tolerated(0.49) benign(0.01) TCGA-X6-A8C4-01 3 47870604 47870604 G A DHX30 Missense_Mutation p.A116T 0.13 tolerated(0.07) benign(0.234) TCGA-X6-A8C4-01 4 162306249 162306249 A G FSTL5 3'UTR 0.13 TCGA-X6-A8C4-01 4 166220781 166220781 G A KLHL2 Silent p.R302R 0.08 TCGA-X6-A8C4-01 4 17805073 17805073 C G DCAF16 3'UTR 0.26 TCGA-X6-A8C4-01 4 1902605 1902605 C T WHSC1 Missense_Mutation p.P75L 0.49 deleterious(0.01) possibly_damaging(0.754) TCGA-X6-A8C4-01 4 38776300 38776300 C T TLR10 Silent p.L304L 0.21 TCGA-X6-A8C4-01 4 46053588 46053588 A C GABRG1 Silent p.S328S 0.42 TCGA-X6-A8C4-01 4 77065614 77065614 C A NUP54 Missense_Mutation p.G27V 0.91 deleterious(0.01) unknown(0) TCGA-X6-A8C4-01 5 10973495 10973495 C G CTNND2 3'UTR 0.27 TCGA-X6-A8C4-01 5 118865588 118865588 G T HSD17B4 Splice_Site p.X615_splice 0.29 TCGA-X6-A8C4-01 5 13885205 13885205 A G DNAH5 Missense_Mutation p.L959P 0.19 possibly_damaging(0.766) TCGA-X6-A8C4-01 5 169096317 169096317 G T DOCK2 Missense_Mutation p.K51N 0.38 deleterious(0.02) benign(0.084) TCGA-X6-A8C4-01 5 71493048 71493048 C T MAP1B Missense_Mutation p.S1289F 0.27 possibly_damaging(0.901) TCGA-X6-A8C4-01 6 125144787 125144787 G C NKAIN2 3'UTR 0.57 TCGA-X6-A8C4-01 6 27222804 27222804 C A PRSS16 Missense_Mutation p.A457D 0.23 tolerated(0.78) benign(0.004) TCGA-X6-A8C4-01 6 29640430 29640430 A G ZFP57 Silent p.S486S 0.24 TCGA-X6-A8C4-01 6 88854277 88854277 C T CNR1 Silent p.L239L 0.38 TCGA-X6-A8C4-01 7 100490238 100490238 G A ACHE Missense_Mutation p.R424C 0.13 tolerated(0.05) possibly_damaging(0.792) TCGA-X6-A8C4-01 7 100683989 100683989 T G MUC17 Missense_Mutation p.S3098A 0.13 possibly_damaging(0.813) TCGA-X6-A8C4-01 7 142111545 142111545 A C TRBV5-7 Missense_Mutation p.F64C 0.33 deleterious(0) probably_damaging(0.968) TCGA-X6-A8C4-01 7 5540803 5540803 G A FBXL18 Missense_Mutation p.A366V 0.20 tolerated(0.28) possibly_damaging(0.843) TCGA-X6-A8C4-01 7 64838883 64838883 G A ZNF92 5'UTR 0.18 TCGA-X6-A8C4-01 7 76889409 76889409 G A CCDC146 Missense_Mutation p.S281N 0.28 tolerated(0.54) benign(0.001) TCGA-X6-A8C4-01 8 124382167 124382167 A T ATAD2 Missense_Mutation p.D275E 0.68 tolerated(0.75) benign(0.001) TCGA-X6-A8C4-01 8 133816235 133816235 G A PHF20L1 Missense_Mutation p.V227I 0.35 tolerated(0.4) benign(0.008) TCGA-X6-A8C4-01 8 142459761 142459761 G A SNORD5 3'Flank 0.08 TCGA-X6-A8C4-01 8 28384942 28384942 T C FZD3 Missense_Mutation p.L222S 0.42 deleterious(0.02) probably_damaging(1) TCGA-X6-A8C4-01 8 56675083 56675083 C G TMEM68 Intron 0.41 TCGA-X6-A8C4-01 8 70981631 70981631 C T PRDM14 Silent p.A155A 0.64 TCGA-X6-A8C4-01 8 86393165 86393165 A C CA2 3'UTR 0.16 TCGA-X6-A8C4-01 9 122011259 122011259 G A BRINP1 Missense_Mutation p.L130F 0.60 deleterious(0.03) probably_damaging(0.992) TCGA-X6-A8C4-01 9 13175821 13175821 G A MPDZ Silent p.V995V 0.95 TCGA-X6-A8C4-01 9 136333868 136333868 G A CACFD1 3'UTR 0.50 TCGA-X6-A8C4-01 9 21409413 21409413 C T IFNA8 Missense_Mutation p.L80F 0.67 deleterious(0.05) benign(0.129) TCGA-X6-A8C4-01 9 27949775 27949775 G T LINGO2 Missense_Mutation p.L299I 0.71 deleterious(0) probably_damaging(0.998) TCGA-X6-A8C4-01 9 72056032 72056032 C G APBA1 Splice_Site p.X728_splice 0.23 TCGA-X6-A8C4-01 9 80881814 80881814 A C CEP78 3'UTR 0.29 TCGA-X6-A8C4-01 9 90252979 90252979 G A DAPK1 Missense_Mutation p.A136T 0.21 deleterious(0.02) possibly_damaging(0.463) TCGA-X6-A8C4-01 X 2853045 2853045 A G ARSE Missense_Mutation p.V533A 0.44 tolerated(0.67) benign(0) TCGA-X6-A8C4-01 X 88009534 88009534 A T CPXCR1 3'UTR 0.79 TCGA-X6-A8C4-01 X 9905685 9905685 C G SHROOM2 Missense_Mutation p.L1367V 0.43 tolerated(0.18) probably_damaging(0.992) TCGA-X6-A8C5-01 10 121341975 121341975 C T TIAL1 Missense_Mutation p.G92E 0.26 tolerated(0.21) probably_damaging(0.968) TCGA-X6-A8C5-01 11 1467009 1467009 C G BRSK2 Missense_Mutation p.D412E 0.35 tolerated(0.06) possibly_damaging(0.486) TCGA-X6-A8C5-01 11 27017052 27017052 A C FIBIN 3'UTR 0.33 TCGA-X6-A8C5-01 11 47776104 47776104 A G FNBP4 Silent p.D142D 0.41 TCGA-X6-A8C5-01 11 5537632 5537632 T C UBQLNL Missense_Mutation p.S14G 0.21 tolerated(0.15) benign(0.004) TCGA-X6-A8C5-01 11 62623694 62623694 G C SLC3A2 5'UTR 0.42 TCGA-X6-A8C5-01 11 66358959 66358959 C G CCDC87 Missense_Mutation p.D510H 0.36 deleterious(0) probably_damaging(0.968) TCGA-X6-A8C5-01 12 133252732 133252732 G C POLE Missense_Mutation p.T323S 0.35 deleterious(0.04) probably_damaging(0.979) TCGA-X6-A8C5-01 12 43826172 43826172 G A ADAMTS20 Nonsense_Mutation p.R1011* 0.27 TCGA-X6-A8C5-01 12 49437143 49437143 C G KMT2D Intron 0.37 TCGA-X6-A8C5-01 12 55846256 55846256 G T OR6C2 Missense_Mutation p.D87Y 0.33 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-X6-A8C5-01 12 6759960 6759960 C A ING4 3'UTR 0.13 TCGA-X6-A8C5-01 12 72666986 72666986 G T TRHDE Missense_Mutation p.G143V 0.33 tolerated(0.13) benign(0.42) TCGA-X6-A8C5-01 12 81015850 81015850 A G PTPRQ Missense_Mutation p.R1871G 0.22 deleterious(0) probably_damaging(0.986) TCGA-X6-A8C5-01 13 31491582 31491582 G T MEDAG Missense_Mutation p.R107S 0.35 deleterious(0) benign(0.04) TCGA-X6-A8C5-01 13 37614582 37614582 T C SUPT20H Missense_Mutation p.D176G 0.22 deleterious(0) probably_damaging(0.986) TCGA-X6-A8C5-01 14 52794162 52794166 CTGAC - PTGER2 Frame_Shift_Del p.D357Lfs*6 0.50 TCGA-X6-A8C5-01 15 23686347 23686347 C G GOLGA6L2 Missense_Mutation p.K425N 0.07 unknown(0) TCGA-X6-A8C5-01 15 23811311 23811311 A T MKRN3 Missense_Mutation p.T128S 0.22 tolerated(0.76) benign(0) TCGA-X6-A8C5-01 15 82450161 82450161 G A EFTUD1 Silent p.N641N 0.22 TCGA-X6-A8C5-01 16 3434294 3434294 A C ZSCAN32 Intron 0.36 TCGA-X6-A8C5-01 16 87364821 87364821 T A FBXO31 3'UTR 0.12 TCGA-X6-A8C5-01 17 22024396 22024396 C A MTRNR2L1 3'Flank 0.69 TCGA-X6-A8C5-01 17 39081634 39081634 G A KRT23 Nonsense_Mutation p.R372* 0.29 TCGA-X6-A8C5-01 17 42337851 42337851 G T SLC4A1 Missense_Mutation p.L136I 0.30 tolerated(0.09) benign(0.271) TCGA-X6-A8C5-01 17 46607870 46607870 C T HOXB1 Missense_Mutation p.G133S 0.05 tolerated(0.53) benign(0.221) TCGA-X6-A8C5-01 17 48211791 48211791 T C PPP1R9B 3'UTR 0.37 TCGA-X6-A8C5-01 17 65683225 65683225 T A PITPNC1 Intron 0.29 TCGA-X6-A8C5-01 17 72950352 72950352 C T HID1 Missense_Mutation p.R582Q 0.52 tolerated(0.18) benign(0.294) TCGA-X6-A8C5-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.48 deleterious(0) probably_damaging(1) TCGA-X6-A8C5-01 17 79411747 79411747 G A RP11-1055B8.7 Missense_Mutation p.V856M 0.50 probably_damaging(0.998) TCGA-X6-A8C5-01 18 22932142 22932142 G C ZNF521 5'Flank 0.33 TCGA-X6-A8C5-01 18 47463703 47463703 T A MYO5B Missense_Mutation p.K606M 0.35 deleterious(0.03) possibly_damaging(0.855) TCGA-X6-A8C5-01 18 59739931 59739931 C T PIGN Missense_Mutation p.G883S 0.33 deleterious(0) probably_damaging(1) TCGA-X6-A8C5-01 19 12060266 12060266 G A ZNF700 Missense_Mutation p.C476Y 0.52 deleterious(0) probably_damaging(1) TCGA-X6-A8C5-01 19 19746284 19746292 CCGCAGTCG - GMIP In_Frame_Del p.R498_R500del 0.32 TCGA-X6-A8C5-01 19 39789057 39789057 T A IFNL1 Silent p.S168S 0.49 TCGA-X6-A8C5-01 19 7691075 7691075 T C XAB2 Missense_Mutation p.T202A 0.14 tolerated(0.7) benign(0.001) TCGA-X6-A8C5-01 1 144013941 144013941 C G SRGAP2B RNA 0.11 TCGA-X6-A8C5-01 1 152057788 152057788 A G TCHHL1 Silent p.S790S 0.17 TCGA-X6-A8C5-01 1 158325628 158325628 G C CD1E Missense_Mutation p.A213P 0.09 deleterious(0.02) probably_damaging(0.966) TCGA-X6-A8C5-01 1 160100061 160100061 G C ATP1A2 Missense_Mutation p.G544A 0.42 deleterious(0.01) possibly_damaging(0.708) TCGA-X6-A8C5-01 1 171755160 171755160 C G METTL13 Missense_Mutation p.A352G 0.32 deleterious(0.03) benign(0.206) TCGA-X6-A8C5-01 1 19992517 19992517 C T HTR6 Missense_Mutation p.R91C 0.38 tolerated(0.17) probably_damaging(0.935) TCGA-X6-A8C5-01 1 200883099 200883099 T C C1orf106 3'Flank 0.35 TCGA-X6-A8C5-01 1 21887130 21887130 G A ALPL Missense_Mutation p.D25N 0.11 tolerated(0.79) benign(0.005) TCGA-X6-A8C5-01 1 229431633 229431633 C G RAB4A Missense_Mutation p.A89G 0.61 deleterious(0) benign(0.099) TCGA-X6-A8C5-01 1 23695985 23695985 C G C1orf213 Silent p.V65V 0.34 TCGA-X6-A8C5-01 1 53904702 53904702 A T SLC25A3P1 RNA 0.44 TCGA-X6-A8C5-01 1 94544976 94544976 G A ABCA4 Missense_Mutation p.P381S 0.40 deleterious(0.01) benign(0.217) TCGA-X6-A8C5-01 22 20343170 20343170 C T XXbac-B33L19.6 5'Flank 0.13 TCGA-X6-A8C5-01 22 24176482 24176482 G T SMARCB1 3'UTR 0.28 TCGA-X6-A8C5-01 2 143742680 143742680 C A KYNU Missense_Mutation p.H253N 0.05 deleterious(0) probably_damaging(0.996) TCGA-X6-A8C5-01 2 196642547 196642547 A T DNAH7 Missense_Mutation p.Y3681N 0.54 deleterious(0) probably_damaging(0.998) TCGA-X6-A8C5-01 2 201437697 201437697 T A SGOL2 Nonsense_Mutation p.C876* 0.26 TCGA-X6-A8C5-01 2 202965106 202965106 C T AC079354.1 Silent p.L363L 0.56 TCGA-X6-A8C5-01 2 2057877 2057877 T C MYT1L 5'UTR 0.18 TCGA-X6-A8C5-01 2 219029327 219029327 C T CXCR1 Missense_Mutation p.R203Q 0.19 deleterious(0) benign(0.076) TCGA-X6-A8C5-01 2 237396679 237396679 C T IQCA1 Silent p.V204V 0.24 TCGA-X6-A8C5-01 2 27464264 27464264 G A CAD Silent p.K1961K 0.25 TCGA-X6-A8C5-01 2 50280726 50280726 G A NRXN1 Missense_Mutation p.R1311C 0.42 deleterious(0) probably_damaging(0.909) TCGA-X6-A8C5-01 2 56403091 56403091 C T RP11-481J13.1 Intron 0.09 TCGA-X6-A8C5-01 2 62934237 62934237 C G EHBP1 5'UTR 0.29 TCGA-X6-A8C5-01 2 80101392 80101392 A C CTNNA2 Missense_Mutation p.Q259P 0.49 deleterious(0.01) possibly_damaging(0.786) TCGA-X6-A8C5-01 3 67049586 67049586 C A KBTBD8 Missense_Mutation p.N66K 0.36 tolerated(0.11) possibly_damaging(0.697) TCGA-X6-A8C5-01 4 120549677 120549677 G A PDE5A Silent p.T50T 0.40 TCGA-X6-A8C5-01 4 128812805 128812805 C T PLK4 Silent p.N669N 0.40 TCGA-X6-A8C5-01 4 1670402 1670402 C T FAM53A Missense_Mutation p.A23T 0.53 tolerated(0.66) possibly_damaging(0.85) TCGA-X6-A8C5-01 4 5857870 5857870 C G CRMP1 Missense_Mutation p.G274R 0.35 deleterious(0) probably_damaging(1) TCGA-X6-A8C5-01 4 5857892 5857892 C T CRMP1 Silent p.L266L 0.34 TCGA-X6-A8C5-01 5 171583763 171583763 A G STK10 Silent p.A62A 0.69 TCGA-X6-A8C5-01 5 85581534 85581534 T A NBPF22P RNA 0.16 TCGA-X6-A8C5-01 6 10961632 10961632 G T SYCP2L Missense_Mutation p.V784F 0.67 deleterious(0.01) possibly_damaging(0.847) TCGA-X6-A8C5-01 6 30294912 30294912 G A TRIM39 Intron 0.46 TCGA-X6-A8C5-01 6 88853662 88853662 C A CNR1 Missense_Mutation p.R444S 0.39 tolerated(0.15) benign(0.005) TCGA-X6-A8C5-01 7 100655696 100655696 G A MUC12 Missense_Mutation p.R5124K 0.26 benign(0.146) TCGA-X6-A8C5-01 7 135073498 135073498 G A CNOT4 Intron 0.36 TCGA-X6-A8C5-01 7 144101737 144101737 C A NOBOX Missense_Mutation p.G41V 0.33 deleterious_low_confidence(0.01) benign(0.002) TCGA-X6-A8C5-01 7 144101743 144101743 A G NOBOX Missense_Mutation p.V39A 0.31 deleterious_low_confidence(0.01) benign(0.001) TCGA-X6-A8C5-01 7 30406073 30406092 ATGTTTCTGCATTCATCTGT TG ZNRF2 3'UTR 0.20 TCGA-X6-A8C5-01 8 113349959 113349959 G A CSMD3 Silent p.A2218A 0.07 TCGA-X6-A8C5-01 8 139767724 139767724 C - COL22A1 Splice_Site p.X659_splice 0.22 TCGA-X6-A8C5-01 8 8750390 8750390 G C MFHAS1 Missense_Mutation p.A60G 0.32 tolerated(0.25) benign(0.034) TCGA-X6-A8C5-01 9 117122049 117122049 C G AKNA Missense_Mutation p.E773Q 0.08 deleterious(0.02) possibly_damaging(0.717) TCGA-X6-A8C5-01 9 120466787 120466787 C A TLR4 Missense_Mutation p.P13T 0.24 tolerated(0.37) benign(0.284) TCGA-X6-A8C5-01 9 131378035 131378035 C T SPTAN1 Missense_Mutation p.A1758V 0.33 deleterious(0) possibly_damaging(0.743) TCGA-X6-A8C5-01 9 97522564 97522564 C T C9orf3 Silent p.L167L 0.44 TCGA-X6-A8C5-01 X 105905498 105905498 C T CXorf57 Silent p.S744S 0.39 TCGA-X6-A8C5-01 X 118124458 118124458 A T LONRF3 Missense_Mutation p.K450N 0.09 tolerated(0.33) benign(0.082) TCGA-X6-A8C5-01 X 138809237 138809237 T C ATP11C 3'UTR 0.47 TCGA-X6-A8C5-01 X 148076635 148076635 T C AFF2 3'UTR 0.32 TCGA-X6-A8C5-01 X 46696464 46696464 C T RP2 5'UTR 0.07 TCGA-X6-A8C5-01 X 48379143 48379143 T G PORCN 3'UTR 0.35 TCGA-X6-A8C5-01 X 71349949 71349949 G A RGAG4 Missense_Mutation p.T481I 0.43 deleterious_low_confidence(0) unknown(0) TCGA-X6-A8C5-01 X 71350175 71350175 C T RGAG4 Missense_Mutation p.E406K 0.40 deleterious_low_confidence(0.04) unknown(0) TCGA-X6-A8C5-01 X 7811571 7811571 T G VCX Silent p.V45V 0.12 TCGA-X6-A8C6-01 11 129739602 129739602 G A NFRKB Silent p.T1131T 0.14 TCGA-X6-A8C6-01 11 46456427 46456427 C A AMBRA1 Silent p.L841L 0.33 TCGA-X6-A8C6-01 11 48328133 48328133 G A OR4S1 Missense_Mutation p.R120H 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-X6-A8C6-01 11 598385 598385 C T PHRF1 Missense_Mutation p.R303C 0.22 deleterious(0) possibly_damaging(0.594) TCGA-X6-A8C6-01 11 61513968 61513969 - C DAGLA 3'UTR 0.17 TCGA-X6-A8C6-01 11 67261233 67261233 G A PITPNM1 Silent p.D1028D 0.32 TCGA-X6-A8C6-01 12 121016935 121016935 C T POP5 3'UTR 0.15 TCGA-X6-A8C6-01 12 132632204 132632204 T A NOC4L Silent p.P160P 0.14 TCGA-X6-A8C6-01 12 52979778 52979779 - T KRT72 Frame_Shift_Ins p.A509Gfs*12 0.22 TCGA-X6-A8C6-01 14 23346227 23346228 CG - LRP10 Frame_Shift_Del p.R545Pfs*32 0.28 TCGA-X6-A8C6-01 14 28734006 28734006 G C BNIP3P1 RNA 0.16 TCGA-X6-A8C6-01 15 24926902 24926902 G A NPAP1 3'UTR 0.34 TCGA-X6-A8C6-01 15 35083329 35083329 T A ACTC1 Missense_Mutation p.T326S 0.09 tolerated_low_confidence(0.67) benign(0.004) TCGA-X6-A8C6-01 15 48704928 48704928 A G FBN1 Silent p.S2688S 0.16 TCGA-X6-A8C6-01 15 72073358 72073358 A G THSD4 3'UTR 0.13 TCGA-X6-A8C6-01 16 24372825 24372825 G A CACNG3 Missense_Mutation p.V197M 0.13 deleterious(0) probably_damaging(0.97) TCGA-X6-A8C6-01 16 58296368 58296368 T C CCDC113 Missense_Mutation p.I236T 0.27 deleterious(0) probably_damaging(0.955) TCGA-X6-A8C6-01 16 82131849 82131849 C T HSD17B2 Silent p.D324D 0.10 TCGA-X6-A8C6-01 16 86371009 86371009 C T LINC00917 RNA 0.25 TCGA-X6-A8C6-01 16 86613032 86613032 C A FOXL1 Missense_Mutation p.R235S 0.31 tolerated(0.4) probably_damaging(0.931) TCGA-X6-A8C6-01 16 87873327 87873327 G A SLC7A5 Missense_Mutation p.S307L 0.14 deleterious(0.01) benign(0.023) TCGA-X6-A8C6-01 17 1630732 1630732 C T WDR81 Nonsense_Mutation p.Q827* 0.24 TCGA-X6-A8C6-01 17 48647081 48647081 C T CACNA1G Missense_Mutation p.S168L 0.12 deleterious(0.04) probably_damaging(0.993) TCGA-X6-A8C6-01 17 61586928 61586928 G A ACE 3'UTR 0.16 TCGA-X6-A8C6-01 17 62541575 62541579 CTGAA T SMURF2 3'UTR 0.32 TCGA-X6-A8C6-01 17 79988581 79988581 G A LRRC45 Missense_Mutation p.R638H 0.15 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C6-01 17 80828208 80828208 G A TBCD Missense_Mutation p.R476H 0.31 deleterious(0) probably_damaging(0.996) TCGA-X6-A8C6-01 19 13373594 13373594 C T CACNA1A Missense_Mutation p.R1348Q 0.12 possibly_damaging(0.776) TCGA-X6-A8C6-01 19 13941965 13941965 A C ZSWIM4 3'UTR 0.27 TCGA-X6-A8C6-01 19 17743633 17743633 G A UNC13A Missense_Mutation p.T1129M 0.10 deleterious(0.04) benign(0.346) TCGA-X6-A8C6-01 19 18286197 18286197 T G IFI30 Splice_Site p.X130_splice 0.12 TCGA-X6-A8C6-01 19 18502736 18502736 C T LRRC25 3'UTR 0.13 TCGA-X6-A8C6-01 19 55284998 55284998 C T KIR2DL1 Missense_Mutation p.A95V 0.30 tolerated(0.13) probably_damaging(0.999) TCGA-X6-A8C6-01 19 6953174 6953174 T C RP11-1137G4.3 5'Flank 0.20 TCGA-X6-A8C6-01 1 144930878 144930878 A C PDE4DIP Intron 0.04 TCGA-X6-A8C6-01 1 144930883 144930883 C G PDE4DIP Intron 0.06 TCGA-X6-A8C6-01 1 15905439 15905439 C T AGMAT Missense_Mutation p.G212D 0.12 deleterious(0.02) probably_damaging(0.973) TCGA-X6-A8C6-01 1 161654766 161654766 T A RPL31P11 RNA 0.09 TCGA-X6-A8C6-01 1 237817712 237817712 A G RYR2 Missense_Mutation p.K2655E 0.24 probably_damaging(0.997) TCGA-X6-A8C6-01 1 31836898 31836899 AT - ZCCHC17 Frame_Shift_Del p.H195Qfs*3 0.29 TCGA-X6-A8C6-01 1 67793870 67793882 GTTTTGTTTACAG - IL12RB2 Splice_Site p.X160_splice 0.18 TCGA-X6-A8C6-01 1 7826909 7826909 C T CAMTA1 3'UTR 0.11 TCGA-X6-A8C6-01 20 39797733 39797733 A G PLCG1 Missense_Mutation p.Y833C 0.06 tolerated(0.09) benign(0.042) TCGA-X6-A8C6-01 20 57042566 57042566 G A APCDD1L Missense_Mutation p.R113C 0.27 deleterious(0) probably_damaging(0.97) TCGA-X6-A8C6-01 20 62038497 62038497 C T KCNQ2 Missense_Mutation p.A707T 0.18 tolerated(0.5) benign(0.001) TCGA-X6-A8C6-01 20 62326741 62326741 A G RTEL1 Missense_Mutation p.Q1211R 0.21 tolerated_low_confidence(0.1) benign(0.009) TCGA-X6-A8C6-01 21 44328980 44328980 C T NDUFV3 Missense_Mutation p.A424V 0.08 deleterious(0.04) benign(0.213) TCGA-X6-A8C6-01 21 46387028 46387028 G A FAM207A Silent p.L144L 0.09 TCGA-X6-A8C6-01 22 25620893 25620893 C A CRYBB2 Silent p.I21I 0.33 TCGA-X6-A8C6-01 22 26239728 26239728 C T MYO18B Nonsense_Mutation p.Q1079* 0.10 TCGA-X6-A8C6-01 22 35785936 35785936 G A HMOX1 Missense_Mutation p.R239Q 0.33 tolerated(0.09) benign(0.087) TCGA-X6-A8C6-01 2 108487751 108487751 A G RGPD4 Silent p.R1097R 0.12 TCGA-X6-A8C6-01 2 96919120 96919120 G T TMEM127 3'UTR 0.18 TCGA-X6-A8C6-01 3 109128927 109128927 G A RP11-702L6.4 RNA 0.09 TCGA-X6-A8C6-01 3 126194056 126194056 G A ZXDC Missense_Mutation p.A218V 0.22 deleterious(0) probably_damaging(0.993) TCGA-X6-A8C6-01 3 139173627 139173627 C T RBP2 Missense_Mutation p.G100R 0.15 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C6-01 3 1445149 1445149 C G CNTN6 3'UTR 0.21 TCGA-X6-A8C6-01 3 156645279 156645279 A G LEKR1 3'Flank 0.12 TCGA-X6-A8C6-01 3 167031854 167031854 A G ZBBX Missense_Mutation p.I442T 0.27 tolerated(0.09) benign(0.037) TCGA-X6-A8C6-01 3 179439296 179439296 C T USP13 Missense_Mutation p.T336M 0.10 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C6-01 3 179529607 179529607 G C PEX5L Missense_Mutation p.A379G 0.09 tolerated(0.07) probably_damaging(0.999) TCGA-X6-A8C6-01 3 24164111 24164111 G A THRB 3'UTR 0.19 TCGA-X6-A8C6-01 3 93592894 93592894 G T PROS1 3'UTR 0.20 TCGA-X6-A8C6-01 3 9829014 9829014 A G TADA3 Missense_Mutation p.L192P 0.18 deleterious(0) probably_damaging(0.999) TCGA-X6-A8C6-01 4 15733416 15733416 C T BST1 Missense_Mutation p.A302V 0.08 deleterious_low_confidence(0.01) benign(0.002) TCGA-X6-A8C6-01 4 22389640 22389640 C T GPR125 Silent p.S1218S 0.19 TCGA-X6-A8C6-01 4 38119814 38119814 G A TBC1D1 Splice_Site p.X988_splice 0.11 TCGA-X6-A8C6-01 4 39900418 39900421 CAAA - PDS5A Frame_Shift_Del p.F536Efs*3 0.34 TCGA-X6-A8C6-01 4 55973922 55973922 T C KDR Missense_Mutation p.E465G 0.21 deleterious(0.04) benign(0.217) TCGA-X6-A8C6-01 5 140182250 140182250 G A PCDHA3 Missense_Mutation p.V490M 0.13 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-X6-A8C6-01 5 140214407 140214407 C G PCDHA7 Missense_Mutation p.P147A 0.19 tolerated_low_confidence(0.58) benign(0.005) TCGA-X6-A8C6-01 5 140250813 140250813 C A PCDHA11 Missense_Mutation p.L709I 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.638) TCGA-X6-A8C6-01 5 140537605 140537605 A G PCDHB17 3'UTR 0.16 TCGA-X6-A8C6-01 5 141313850 141313850 G A KIAA0141 Missense_Mutation p.A315T 0.11 deleterious(0.03) probably_damaging(1) TCGA-X6-A8C6-01 5 153078608 153078608 G A GRIA1 Missense_Mutation p.G486D 0.09 deleterious(0.01) probably_damaging(1) TCGA-X6-A8C6-01 5 21752318 21752318 C T CDH12 Missense_Mutation p.R638Q 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-X6-A8C6-01 5 76372900 76372900 C G ZBED3 3'UTR 0.20 TCGA-X6-A8C6-01 6 100868711 100868711 C A SIM1 Silent p.R374R 0.08 TCGA-X6-A8C6-01 6 11105281 11105281 G - ERVFRD-1 Frame_Shift_Del p.P88Lfs*9 0.14 TCGA-X6-A8C6-01 6 112512893 112512893 A T LAMA4 Nonsense_Mutation p.C221* 0.15 TCGA-X6-A8C6-01 6 33171712 33171712 G T SLC39A7 3'UTR 0.22 TCGA-X6-A8C6-01 6 41654675 41654675 C A TFEB Intron 0.27 TCGA-X6-A8C6-01 6 51776645 51776645 C A PKHD1 Nonsense_Mutation p.E2148* 0.26 TCGA-X6-A8C6-01 6 93955133 93955133 A - EPHA7 Frame_Shift_Del p.F922Sfs*34 0.14 TCGA-X6-A8C6-01 7 104548770 104548770 T A LHFPL3 3'UTR 0.11 TCGA-X6-A8C6-01 7 104747869 104747869 G A KMT2E Missense_Mutation p.E989K 0.25 deleterious_low_confidence(0) benign(0.292) TCGA-X6-A8C6-01 7 141358884 141358884 T C KIAA1147 3'UTR 0.29 TCGA-X6-A8C6-01 7 143956625 143956625 A G OR2A7 Missense_Mutation p.F33L 0.05 tolerated(0.71) benign(0.005) TCGA-X6-A8C6-01 7 47698517 47698517 G T C7orf65 Missense_Mutation p.E49D 0.15 deleterious_low_confidence(0) benign(0.388) TCGA-X6-A8C6-01 7 50344442 50344442 G A IKZF1 5'Flank 0.16 TCGA-X6-A8C6-01 7 57522798 57522798 A G ZNF716 Silent p.P62P 0.08 TCGA-X6-A8C6-01 7 73535363 73535363 C G LIMK1 Missense_Mutation p.L589V 0.09 deleterious(0.04) possibly_damaging(0.715) TCGA-X6-A8C6-01 7 73535474 73535474 C T LIMK1 Missense_Mutation p.S596F 0.16 deleterious(0.05) possibly_damaging(0.594) TCGA-X6-A8C6-01 7 73535505 73535505 C T LIMK1 Silent p.T606T 0.11 TCGA-X6-A8C6-01 7 73536456 73536456 C T LIMK1 3'UTR 0.24 TCGA-X6-A8C6-01 8 23146092 23146092 T A R3HCC1 5'UTR 0.09 TCGA-X6-A8C6-01 8 61765390 61765390 C T CHD7 Missense_Mutation p.P2036S 0.28 benign(0.196) TCGA-X6-A8C6-01 9 104075120 104075120 T G LPPR1 Missense_Mutation p.L226R 0.08 deleterious(0) possibly_damaging(0.852) TCGA-X6-A8C6-01 9 104499623 104499623 G C GRIN3A Missense_Mutation p.S213R 0.10 deleterious(0) possibly_damaging(0.839) TCGA-X6-A8C6-01 9 16411576 16411576 T C BNC2 3'UTR 0.12 TCGA-X6-A8C6-01 9 39165950 39165950 C T CNTNAP3 Missense_Mutation p.G486D 0.13 tolerated(0.06) benign(0.443) TCGA-X6-A8C6-01 9 79320648 79320648 G A PRUNE2 Missense_Mutation p.S2181F 0.07 tolerated(0.12) possibly_damaging(0.907) TCGA-X6-A8C6-01 9 79320705 79320705 G A PRUNE2 Missense_Mutation p.S2162F 0.07 tolerated(0.06) benign(0.035) TCGA-X6-A8C6-01 9 79322001 79322001 G C PRUNE2 Missense_Mutation p.A1730G 0.05 tolerated(0.32) possibly_damaging(0.507) TCGA-X6-A8C6-01 9 79469111 79469111 C T PRUNE2 Missense_Mutation p.R17H 0.04 tolerated(0.09) possibly_damaging(0.847) TCGA-X6-A8C6-01 X 148080168 148080168 G T AFF2 3'UTR 0.22 TCGA-X6-A8C6-01 X 69720318 69720318 C A DLG3 Intron 0.29 TCGA-X6-A8C7-01 10 89507276 89507276 T A PAPSS2 3'UTR 0.21 TCGA-X6-A8C7-01 10 89725922 89725922 G A PTEN 3'UTR 0.09 TCGA-X6-A8C7-01 11 7489872 7489872 C T SYT9 3'UTR 0.17 TCGA-X6-A8C7-01 12 104381509 104381509 A G TDG 3'UTR 0.16 TCGA-X6-A8C7-01 12 113532615 113532615 C T DTX1 Nonsense_Mutation p.R417* 0.10 TCGA-X6-A8C7-01 14 23993837 23993837 C T ZFHX2 Missense_Mutation p.D1772N 0.14 possibly_damaging(0.848) TCGA-X6-A8C7-01 15 63928318 63928318 T C HERC1 Missense_Mutation p.T4086A 0.53 benign(0.061) TCGA-X6-A8C7-01 16 30773099 30773099 C G C16orf93 5'UTR 0.54 TCGA-X6-A8C7-01 17 18571865 18571865 T C ZNF286B Intron 0.10 TCGA-X6-A8C7-01 19 39978784 39978784 C T TIMM50 Silent p.N363N 0.08 TCGA-X6-A8C7-01 19 42626729 42626729 C T POU2F2 Splice_Site p.X10_splice 0.26 TCGA-X6-A8C7-01 1 12785551 12785551 C T AADACL3 Missense_Mutation p.A214V 0.10 deleterious(0.01) benign(0.421) TCGA-X6-A8C7-01 1 167096608 167096608 G A DUSP27 Missense_Mutation p.R747H 0.09 tolerated(0.08) benign(0.022) TCGA-X6-A8C7-01 1 231064789 231064789 T C TTC13 Missense_Mutation p.N451D 0.06 deleterious(0.02) benign(0.103) TCGA-X6-A8C7-01 20 23345010 23345010 A G GZF1 5'UTR 0.10 TCGA-X6-A8C7-01 2 145277515 145277515 C G ZEB2 5'UTR 0.36 TCGA-X6-A8C7-01 2 234173536 234173536 A G ATG16L1 Splice_Site p.X130_splice 0.34 TCGA-X6-A8C7-01 3 184062686 184062686 G A FAM131A Silent p.R343R 0.06 TCGA-X6-A8C7-01 3 52540712 52540712 G T STAB1 Missense_Mutation p.R612L 0.33 deleterious(0) probably_damaging(0.993) TCGA-X6-A8C7-01 4 71587799 71587799 T - RUFY3 5'UTR 0.25 TCGA-X6-A8C7-01 4 8308782 8308782 C G HTRA3 3'UTR 0.51 TCGA-X6-A8C7-01 5 123983157 123983157 T A ZNF608 Missense_Mutation p.S974C 0.08 tolerated(0.1) possibly_damaging(0.591) TCGA-X6-A8C7-01 5 176885489 176885490 - C DBN1 Frame_Shift_Ins p.A451Gfs*3 0.29 TCGA-X6-A8C7-01 6 123869712 123869712 C T TRDN Missense_Mutation p.R93H 0.24 tolerated_low_confidence(1) unknown(0) TCGA-X6-A8C7-01 6 56479440 56479440 A T DST Intron 0.30 TCGA-X6-A8C7-01 8 91018313 91018313 G T DECR1 Intron 0.20 TCGA-X6-A8C7-01 9 124801570 124801570 A T TTLL11 Silent p.G270G 0.10 TCGA-X6-A8C7-01 9 88952160 88952160 G T ZCCHC6 Intron 0.18 TCGA-X6-A8C7-01 X 54817513 54817513 G A ITIH6 Missense_Mutation p.R125W 0.07 tolerated(0.08) benign(0.039) TCGA-X9-A971-01 10 22825871 22825871 C T PIP4K2A 3'UTR 1.00 TCGA-X9-A971-01 10 46146993 46146993 G A ZFAND4 Intron 0.57 TCGA-X9-A971-01 10 47754779 47754779 G A ANXA8L2 Missense_Mutation p.R129Q 0.56 tolerated(0.43) benign(0.001) TCGA-X9-A971-01 11 15267818 15267818 G C INSC 3'UTR 0.28 TCGA-X9-A971-01 11 66475241 66475241 G T SPTBN2 Missense_Mutation p.H467N 0.20 deleterious(0) possibly_damaging(0.655) TCGA-X9-A971-01 12 10525595 10525595 G T KLRK1 3'UTR 0.22 TCGA-X9-A971-01 12 133313590 133313590 C A ANKLE2 Silent p.L494L 0.57 TCGA-X9-A971-01 12 40714914 40714915 TT A LRRK2 Frame_Shift_Del p.Y1699Ifs*10 0.37 TCGA-X9-A971-01 12 43825296 43825296 G A ADAMTS20 Missense_Mutation p.L1034F 0.14 tolerated(0.14) benign(0.067) TCGA-X9-A971-01 12 5020795 5020795 G A KCNA1 Missense_Mutation p.R84H 0.18 deleterious(0) probably_damaging(0.999) TCGA-X9-A971-01 12 52308224 52308224 A - ACVRL1 Frame_Shift_Del p.G211Afs*47 0.08 TCGA-X9-A971-01 13 58299074 58299074 G A PCDH17 Silent p.A1042A 0.12 TCGA-X9-A971-01 13 61986224 61986224 G A PCDH20 Nonsense_Mutation p.R670* 0.17 TCGA-X9-A971-01 14 20822373 20822373 G A PARP2 Missense_Mutation p.E257K 0.22 deleterious(0) probably_damaging(0.965) TCGA-X9-A971-01 15 27193612 27193612 G A GABRA5 3'UTR 0.42 TCGA-X9-A971-01 15 50534531 50534531 C T HDC Missense_Mutation p.V639I 0.14 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-X9-A971-01 16 15850274 15850274 C T MYH11 Missense_Mutation p.G565D 0.11 benign(0.25) TCGA-X9-A971-01 16 77356258 77356258 T A ADAMTS18 Missense_Mutation p.D713V 0.56 deleterious(0) probably_damaging(0.944) TCGA-X9-A971-01 17 1839017 1839017 A G RTN4RL1 3'UTR 0.18 TCGA-X9-A971-01 17 42113070 42113070 G A LSM12 3'UTR 0.28 TCGA-X9-A971-01 17 80606236 80606236 G A WDR45B 5'UTR 0.12 TCGA-X9-A971-01 18 56892836 56892836 G T GRP Missense_Mutation p.L84F 0.35 tolerated(0.05) possibly_damaging(0.669) TCGA-X9-A971-01 19 10217055 10217055 T A PPAN-P2RY11 5'Flank 0.15 TCGA-X9-A971-01 19 12691831 12691831 A G ZNF490 Missense_Mutation p.V353A 0.07 tolerated(0.22) benign(0.058) TCGA-X9-A971-01 19 15281256 15281256 C G NOTCH3 Missense_Mutation p.R1667P 0.27 deleterious(0) probably_damaging(0.999) TCGA-X9-A971-01 19 19361458 19361458 G T NCAN 3'UTR 0.25 TCGA-X9-A971-01 19 305797 305797 A T MIER2 3'UTR 0.08 TCGA-X9-A971-01 19 31038939 31038939 C T ZNF536 Missense_Mutation p.R805W 0.19 deleterious(0) possibly_damaging(0.855) TCGA-X9-A971-01 19 34891045 34891045 C T GPI 3'UTR 0.32 TCGA-X9-A971-01 19 44516482 44516482 G A ZNF230 3'UTR 0.65 TCGA-X9-A971-01 19 5077423 5077423 A C KDM4B Missense_Mutation p.H241P 0.10 probably_damaging(0.999) TCGA-X9-A971-01 1 150469344 150469344 G A TARS2 Missense_Mutation p.R327Q 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-X9-A971-01 1 1848446 1848446 C T CALML6 Silent p.N144N 0.28 TCGA-X9-A971-01 1 1961585 1961585 G A GABRD Missense_Mutation p.R408H 0.13 tolerated(0.18) benign(0.384) TCGA-X9-A971-01 1 20517707 20517707 C A UBXN10 Missense_Mutation p.T218K 0.14 deleterious(0) possibly_damaging(0.881) TCGA-X9-A971-01 1 37949283 37949283 G A ZC3H12A 3'UTR 0.39 TCGA-X9-A971-01 1 44071106 44071106 G A PTPRF Silent p.S1127S 0.21 TCGA-X9-A971-01 1 45671800 45671800 C T ZSWIM5 Missense_Mutation p.E75K 0.37 deleterious(0.04) probably_damaging(0.981) TCGA-X9-A971-01 1 55139736 55139736 C G MROH7 Missense_Mutation p.I616M 0.22 deleterious(0.03) possibly_damaging(0.6) TCGA-X9-A971-01 20 58476847 58476847 A G SYCP2 Missense_Mutation p.L351P 0.85 deleterious(0) probably_damaging(0.988) TCGA-X9-A971-01 20 58496452 58496452 T A SYCP2 Missense_Mutation p.K27N 0.79 deleterious(0.04) benign(0.387) TCGA-X9-A971-01 21 44949764 44949764 G A HSF2BP Missense_Mutation p.S292L 0.50 tolerated(1) benign(0.016) TCGA-X9-A971-01 21 47852034 47852034 G C PCNT Missense_Mutation p.E2886Q 0.30 possibly_damaging(0.727) TCGA-X9-A971-01 22 45745632 45745632 G C SMC1B Missense_Mutation p.L1158V 0.04 deleterious(0) probably_damaging(0.956) TCGA-X9-A971-01 2 17696723 17696723 A T RAD51AP2 Missense_Mutation p.L987H 0.43 deleterious(0) benign(0.179) TCGA-X9-A971-01 2 183032908 183032908 C G PDE1A Intron 0.58 TCGA-X9-A971-01 2 216243906 216243906 T C FN1 Missense_Mutation p.K1857E 0.49 deleterious(0.05) probably_damaging(0.994) TCGA-X9-A971-01 3 14863095 14863095 C T FGD5 Silent p.D839D 0.73 TCGA-X9-A971-01 3 38357847 38357847 C T SLC22A14 Missense_Mutation p.S522L 0.29 tolerated(1) benign(0.01) TCGA-X9-A971-01 3 43074191 43074191 C T FAM198A Missense_Mutation p.P146S 0.32 tolerated_low_confidence(0.11) benign(0.135) TCGA-X9-A971-01 3 5257568 5257568 A G EDEM1 Missense_Mutation p.M647V 0.21 deleterious(0.01) benign(0.146) TCGA-X9-A971-01 3 53785793 53785793 C T CACNA1D Silent p.Y1198Y 0.27 TCGA-X9-A971-01 3 9106121 9106121 G A SRGAP3 Missense_Mutation p.R211C 0.46 deleterious(0) probably_damaging(0.989) TCGA-X9-A971-01 4 109683976 109683976 C T ETNPPL Intron 0.24 TCGA-X9-A971-01 4 124324495 124324495 T C SPRY1 3'UTR 0.09 TCGA-X9-A971-01 4 134112046 134112046 A T PCDH10 3'UTR 0.26 TCGA-X9-A971-01 4 52779911 52779911 C T DCUN1D4 3'UTR 0.06 TCGA-X9-A971-01 4 57193907 57193907 C A KIAA1211 Silent p.A1213A 0.29 TCGA-X9-A971-01 4 68338334 68338334 T A CENPC Missense_Mutation p.I941L 0.64 tolerated(0.18) benign(0.076) TCGA-X9-A971-01 4 71522173 71522173 C T IGJ Missense_Mutation p.S118N 0.09 tolerated(0.27) benign(0.01) TCGA-X9-A971-01 5 140683011 140683011 T C SLC25A2 Missense_Mutation p.E141G 0.19 tolerated(0.21) benign(0.297) TCGA-X9-A971-01 5 178310890 178310890 C T ZNF354B Silent p.S479S 0.22 TCGA-X9-A971-01 5 41312280 41312280 C T PLCXD3 3'UTR 0.45 TCGA-X9-A971-01 5 94728590 94728590 C G FAM81B Missense_Mutation p.Q73E 0.23 tolerated_low_confidence(0.06) benign(0.027) TCGA-X9-A971-01 7 142563919 142563919 G A EPHB6 Missense_Mutation p.R436H 0.36 deleterious(0.04) probably_damaging(0.99) TCGA-X9-A971-01 7 23571571 23571571 C A TRA2A 5'UTR 0.07 TCGA-X9-A971-01 7 24838334 24838334 C T OSBPL3 3'UTR 0.18 TCGA-X9-A971-01 7 89856742 89856742 T C STEAP2 Missense_Mutation p.V317A 0.15 tolerated(0.93) benign(0.059) TCGA-X9-A971-01 8 105367322 105367322 G A DCSTAMP Missense_Mutation p.R416H 0.35 deleterious(0) probably_damaging(1) TCGA-X9-A971-01 8 17230662 17230662 C T MTMR7 Missense_Mutation p.V38M 0.20 deleterious(0.02) benign(0.336) TCGA-X9-A971-01 8 7686520 7686520 C - DEFB106A 3'UTR 0.25 TCGA-X9-A971-01 9 117808688 117808688 C G TNC Splice_Site p.X1709_splice 0.19 TCGA-X9-A973-01 10 104357026 104357026 C T SUFU Nonsense_Mutation p.Q296* 0.52 TCGA-X9-A973-01 11 15243108 15243108 C T INSC Missense_Mutation p.A349V 0.29 deleterious(0) probably_damaging(1) TCGA-X9-A973-01 11 494574 494574 G A RNH1 3'UTR 0.60 TCGA-X9-A973-01 11 56086342 56086342 T G OR8K3 Missense_Mutation p.L187W 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-X9-A973-01 11 64572603 64572603 T C MEN1 Missense_Mutation p.D423G 0.66 deleterious(0) probably_damaging(1) TCGA-X9-A973-01 11 64673588 64673588 G T ATG2A Silent p.S1087S 0.19 TCGA-X9-A973-01 12 124358165 124358165 G C DNAH10 Missense_Mutation p.E2498Q 0.40 possibly_damaging(0.901) TCGA-X9-A973-01 12 48110109 48110109 T G ENDOU Missense_Mutation p.E242A 0.47 deleterious(0.03) possibly_damaging(0.685) TCGA-X9-A973-01 13 37453609 37453609 C T SMAD9 Missense_Mutation p.R73H 0.12 deleterious(0) probably_damaging(0.988) TCGA-X9-A973-01 13 49282762 49282762 A G CYSLTR2 3'UTR 0.68 TCGA-X9-A973-01 13 61984993 61984993 C T PCDH20 3'UTR 0.36 TCGA-X9-A973-01 14 62567269 62567269 C T SYT16 Silent p.S594S 0.67 TCGA-X9-A973-01 14 63269288 63269288 G C KCNH5 Missense_Mutation p.I527M 0.62 tolerated(0.18) possibly_damaging(0.549) TCGA-X9-A973-01 14 76246006 76246011 AAGAAC - TTLL5 In_Frame_Del p.K826_N827del 0.59 TCGA-X9-A973-01 14 86092517 86092517 G T FLRT2 3'UTR 0.67 TCGA-X9-A973-01 15 102346825 102346825 A T OR4F6 Silent p.R301R 0.57 TCGA-X9-A973-01 16 20448601 20448601 G A ACSM5 Missense_Mutation p.G483E 0.15 deleterious(0) probably_damaging(1) TCGA-X9-A973-01 16 77225056 77225056 G C MON1B 5'UTR 0.14 TCGA-X9-A973-01 17 43472711 43472711 C T ARHGAP27 3'UTR 0.12 TCGA-X9-A973-01 19 14593588 14593588 G A GIPC1 Silent p.G67G 0.10 TCGA-X9-A973-01 19 20728648 20728648 C A ZNF737 Missense_Mutation p.D121Y 0.05 deleterious(0.04) possibly_damaging(0.88) TCGA-X9-A973-01 19 41630690 41630690 C T CYP2F1 Missense_Mutation p.A344V 0.22 tolerated(0.2) benign(0.001) TCGA-X9-A973-01 19 50760604 50760604 C A MYH14 Missense_Mutation p.P698Q 0.46 tolerated(0.3) benign(0.288) TCGA-X9-A973-01 19 6466819 6466819 G T CRB3 Intron 0.20 TCGA-X9-A973-01 1 207753676 207753676 T C CR1 Silent p.C1676C 0.52 TCGA-X9-A973-01 1 62566050 62566050 G T INADL Intron 0.20 TCGA-X9-A973-01 20 35545356 35545356 C A SAMHD1 Missense_Mutation p.A317S 0.64 deleterious(0.01) possibly_damaging(0.733) TCGA-X9-A973-01 20 57466892 57466892 C T GNAS Intron 0.55 TCGA-X9-A973-01 21 35478516 35478516 A G SLC5A3 3'UTR 0.31 TCGA-X9-A973-01 21 44450390 44450390 T C PKNOX1 3'UTR 0.40 TCGA-X9-A973-01 22 19175110 19175110 G A CLTCL1 Missense_Mutation p.A1522V 0.12 tolerated(0.09) benign(0.007) TCGA-X9-A973-01 2 103148889 103148889 G T SLC9A4 Missense_Mutation p.M713I 0.35 deleterious(0.04) benign(0.084) TCGA-X9-A973-01 2 166536899 166536899 A C CSRNP3 3'UTR 0.13 TCGA-X9-A973-01 3 97868996 97868996 C A OR5H14 Missense_Mutation p.A256D 0.15 deleterious(0) benign(0.197) TCGA-X9-A973-01 4 167983668 167983668 C A SPOCK3 Missense_Mutation p.W73C 0.37 deleterious(0) probably_damaging(0.998) TCGA-X9-A973-01 4 185677958 185677958 G A ACSL1 3'UTR 0.58 TCGA-X9-A973-01 4 186456649 186456649 C T PDLIM3 5'UTR 0.53 TCGA-X9-A973-01 4 2934379 2934379 G T MFSD10 Missense_Mutation p.S160Y 0.29 deleterious(0) probably_damaging(0.975) TCGA-X9-A973-01 4 57180907 57180907 G A KIAA1211 Silent p.E413E 0.67 TCGA-X9-A973-01 4 76568478 76568479 - TT G3BP2 3'UTR 0.15 TCGA-X9-A973-01 5 140588657 140588657 T C PCDHB12 Missense_Mutation p.S60P 0.37 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-X9-A973-01 5 176524620 176524620 C T FGFR4 Silent p.H784H 0.56 TCGA-X9-A973-01 6 117127901 117127901 C A GPRC6A Missense_Mutation p.V323F 0.45 deleterious(0) probably_damaging(0.966) TCGA-X9-A973-01 6 118638372 118638389 CTTGCACTGGGGACAGCG - SLC35F1 3'UTR 0.36 TCGA-X9-A973-01 6 150290442 150290442 A T ULBP1 Nonsense_Mutation p.K191* 0.08 TCGA-X9-A973-01 6 17292011 17292011 G T RBM24 Silent p.P124P 0.48 TCGA-X9-A973-01 6 28888004 28888004 C T TRIM27 Missense_Mutation p.E178K 0.25 tolerated(0.43) possibly_damaging(0.636) TCGA-X9-A973-01 7 47945469 47945469 T C PKD1L1 Missense_Mutation p.H498R 0.36 tolerated(0.46) benign(0.001) TCGA-X9-A973-01 7 8474114 8474114 C T NXPH1 5'UTR 0.39 TCGA-X9-A973-01 8 41788230 41788230 A G KAT6A 3'UTR 0.23 TCGA-X9-A973-01 8 8176728 8176728 C T SGK223 Missense_Mutation p.V1053I 0.20 probably_damaging(0.972) TCGA-X9-A973-01 9 130552363 130552363 T A CDK9 3'UTR 0.16 TCGA-X9-A973-01 X 140996475 140996475 C T MAGEC1 Silent p.V1095V 0.24 TCGA-X9-A973-01 X 149671639 149671639 G T MAMLD1 Intron 0.59 TCGA-X9-A973-01 X 30326654 30326654 T C NR0B1 Missense_Mutation p.Q276R 0.80 tolerated(0.12) possibly_damaging(0.627) TCGA-Z4-A8JB-01 10 114194138 114194138 G A ZDHHC6 Nonsense_Mutation p.Q274* 0.14 TCGA-Z4-A8JB-01 10 117308997 117308997 C T ATRNL1 Missense_Mutation p.A1249V 0.13 deleterious(0) probably_damaging(0.996) TCGA-Z4-A8JB-01 13 39433680 39433680 A G FREM2 Missense_Mutation p.E2491G 0.13 tolerated(0.08) benign(0.386) TCGA-Z4-A8JB-01 14 74823731 74823731 A G VRTN Missense_Mutation p.E82G 0.15 tolerated(0.1) benign(0.005) TCGA-Z4-A8JB-01 15 41145415 41145415 G A SPINT1 Missense_Mutation p.R190H 0.26 tolerated(0.95) benign(0) TCGA-Z4-A8JB-01 16 4307858 4307858 C T TFAP4 3'UTR 0.11 TCGA-Z4-A8JB-01 17 56326482 56326482 G A LPO Silent p.V129V 0.08 TCGA-Z4-A8JB-01 19 39088139 39088139 G A MAP4K1 Missense_Mutation p.R589C 0.19 deleterious(0) probably_damaging(0.911) TCGA-Z4-A8JB-01 19 45912297 45912297 G A CD3EAP Silent p.L357L 0.10 TCGA-Z4-A8JB-01 19 58232323 58232323 A T ZNF671 Missense_Mutation p.F377L 0.35 tolerated(0.46) benign(0.01) TCGA-Z4-A8JB-01 19 58806625 58806625 G A ZNF8 Missense_Mutation p.R484Q 0.07 tolerated(0.8) possibly_damaging(0.797) TCGA-Z4-A8JB-01 19 9297316 9297316 C G OR7D2 Missense_Mutation p.P287A 0.13 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-Z4-A8JB-01 1 171510647 171510647 G T PRRC2C Nonsense_Mutation p.G1346* 0.25 TCGA-Z4-A8JB-01 1 1717255 1717255 A T GNB1 3'UTR 0.14 TCGA-Z4-A8JB-01 1 175355259 175355259 C G TNR Missense_Mutation p.Q562H 0.27 tolerated(0.12) possibly_damaging(0.904) TCGA-Z4-A8JB-01 1 70477507 70477507 T G LRRC7 Missense_Mutation p.C306W 0.25 deleterious(0) probably_damaging(0.997) TCGA-Z4-A8JB-01 1 804050 804050 C A FAM41C RNA 0.08 TCGA-Z4-A8JB-01 20 50769317 50769317 C T ZFP64 Missense_Mutation p.A472T 0.12 tolerated(0.52) benign(0.001) TCGA-Z4-A8JB-01 3 129033931 129033931 C T H1FX 3'UTR 0.14 TCGA-Z4-A8JB-01 3 31702249 31702249 G C OSBPL10 3'UTR 0.22 TCGA-Z4-A8JB-01 4 118975174 118975174 T C NDST3 Missense_Mutation p.Y37H 0.11 tolerated_low_confidence(0.5) benign(0.028) TCGA-Z4-A8JB-01 6 43418001 43418001 G A ABCC10 3'UTR 0.22 TCGA-Z4-A8JB-01 7 65419796 65419796 T C VKORC1L1 3'UTR 0.20 TCGA-Z4-A8JB-01 7 92938151 92938151 C T CCDC132 Nonsense_Mutation p.Q549* 0.24 TCGA-Z4-A8JB-01 8 28924843 28924843 A G KIF13B 3'UTR 0.18 TCGA-Z4-A8JB-01 8 48872595 48872595 C T PRKDC Missense_Mutation p.G31D 0.22 benign(0.211) TCGA-Z4-A8JB-01 9 139915890 139915890 G A ABCA2 Missense_Mutation p.S284F 0.13 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-Z4-A8JB-01 X 18767984 18767984 C A PPEF1 Missense_Mutation p.P104T 0.07 deleterious(0.01) probably_damaging(1) TCGA-Z4-A9VC-01 10 14709678 14709678 G C FAM107B Missense_Mutation p.R142G 0.28 tolerated_low_confidence(0.05) benign(0.01) TCGA-Z4-A9VC-01 10 61789188 61789188 T A ANK3 3'UTR 0.39 TCGA-Z4-A9VC-01 10 89692794 89692794 A C PTEN Missense_Mutation p.H93P 0.32 deleterious(0) probably_damaging(0.998) TCGA-Z4-A9VC-01 10 89692818 89692818 T C PTEN Missense_Mutation p.I101T 0.28 deleterious(0) probably_damaging(0.943) TCGA-Z4-A9VC-01 11 117774364 117774364 T A TMPRSS13 Intron 0.32 TCGA-Z4-A9VC-01 11 4825844 4825844 A G OR52R1 5'Flank 0.51 TCGA-Z4-A9VC-01 12 129566374 129566374 T C TMEM132D Missense_Mutation p.E618G 0.26 deleterious(0.03) benign(0.042) TCGA-Z4-A9VC-01 12 13153397 13153397 G C HEBP1 5'Flank 0.29 TCGA-Z4-A9VC-01 12 133351889 133351889 G A GOLGA3 Silent p.N1327N 0.15 TCGA-Z4-A9VC-01 12 48539040 48539040 C T PFKM Missense_Mutation p.R785C 0.09 deleterious(0.04) benign(0.116) TCGA-Z4-A9VC-01 14 100123367 100123369 AAA - HHIPL1 In_Frame_Del p.N312del 0.31 TCGA-Z4-A9VC-01 14 104493206 104493206 C T TDRD9 Missense_Mutation p.A1071V 0.10 tolerated(0.46) benign(0.002) TCGA-Z4-A9VC-01 14 105516875 105516875 G A GPR132 3'UTR 0.08 TCGA-Z4-A9VC-01 14 64492098 64492098 G - SYNE2 Frame_Shift_Del p.E2071Kfs*19 0.21 TCGA-Z4-A9VC-01 15 45465795 45465795 G A SHF Missense_Mutation p.P258S 0.27 deleterious(0.04) benign(0.084) TCGA-Z4-A9VC-01 16 3191240 3191240 C T ZNF213 Silent p.T424T 0.32 TCGA-Z4-A9VC-01 17 42194888 42194888 G A HDAC5 5'UTR 0.10 TCGA-Z4-A9VC-01 17 7576534 7576534 A C TP53 Intron 0.33 TCGA-Z4-A9VC-01 18 52893256 52893256 A T TCF4 3'Flank 0.48 TCGA-Z4-A9VC-01 18 76753701 76753701 C T SALL3 Silent p.L570L 0.17 TCGA-Z4-A9VC-01 19 11565282 11565282 C T ELAVL3 3'UTR 0.23 TCGA-Z4-A9VC-01 19 37264096 37264096 C A CTD-2162K18.4 Missense_Mutation p.F6L 0.27 deleterious_low_confidence(0) benign(0.302) TCGA-Z4-A9VC-01 19 4675494 4675494 G T DPP9 3'UTR 0.25 TCGA-Z4-A9VC-01 19 55144554 55144554 A G LILRB1 Missense_Mutation p.Q349R 0.34 tolerated(0.68) benign(0.001) TCGA-Z4-A9VC-01 19 9062573 9062573 G A MUC16 Silent p.S8291S 0.34 TCGA-Z4-A9VC-01 1 65878867 65878867 G T DNAJC6 3'UTR 0.17 TCGA-Z4-A9VC-01 20 6096537 6096537 C T FERMT1 Silent p.P102P 0.40 TCGA-Z4-A9VC-01 2 27260014 27260014 T C TMEM214 Silent p.F326F 0.25 TCGA-Z4-A9VC-01 3 107096466 107096466 C A CCDC54 Missense_Mutation p.A11D 0.12 deleterious(0) possibly_damaging(0.816) TCGA-Z4-A9VC-01 3 161221320 161221320 C T OTOL1 Missense_Mutation p.R342W 0.26 deleterious(0) probably_damaging(0.965) TCGA-Z4-A9VC-01 3 178952146 178952147 - A PIK3CA Frame_Shift_Ins p.N1068Kfs*5 0.36 TCGA-Z4-A9VC-01 3 47462189 47462189 C T SCAP Missense_Mutation p.R473H 0.30 tolerated(0.19) benign(0.217) TCGA-Z4-A9VC-01 4 184019469 184019469 C T WWC2 5'Flank 0.24 TCGA-Z4-A9VC-01 4 69795393 69795393 G T UGT2A3 3'UTR 0.27 TCGA-Z4-A9VC-01 5 65350051 65350051 C T ERBB2IP Missense_Mutation p.P969S 0.13 tolerated(0.24) benign(0.003) TCGA-Z4-A9VC-01 6 152652741 152652741 G A SYNE1 Missense_Mutation p.A4360V 0.33 benign(0.288) TCGA-Z4-A9VC-01 6 32029299 32029299 C T TNXB Missense_Mutation p.R2456H 0.31 benign(0.005) TCGA-Z4-A9VC-01 7 50531032 50531032 C T DDC Missense_Mutation p.R447H 0.37 deleterious(0) probably_damaging(1) TCGA-Z4-A9VC-01 7 76866305 76866305 G A CCDC146 Silent p.A66A 0.57 TCGA-Z4-A9VC-01 8 144944765 144944765 C A EPPK1 Missense_Mutation p.R886L 0.15 benign(0.055) TCGA-Z4-A9VC-01 8 38265737 38265737 A G LETM2 Missense_Mutation p.Q427R 0.07 tolerated_low_confidence(0.06) benign(0.157) TCGA-Z4-A9VC-01 9 135513583 135513583 T A DDX31 Intron 0.20 TCGA-Z4-A9VC-01 9 3257180 3257180 C T RFX3 Missense_Mutation p.C542Y 0.21 deleterious(0) possibly_damaging(0.824) TCGA-Z4-AAPF-01 10 102222874 102222874 T C WNT8B 5'UTR 0.41 TCGA-Z4-AAPF-01 10 77158854 77158854 A T ZNF503 Missense_Mutation p.S532T 0.40 deleterious(0) probably_damaging(0.989) TCGA-Z4-AAPF-01 11 43364760 43364760 G A API5 3'Flank 0.11 TCGA-Z4-AAPF-01 11 86160930 86160930 C T ME3 Splice_Site p.X377_splice 0.43 TCGA-Z4-AAPF-01 12 50185608 50185608 C T NCKAP5L 3'UTR 0.44 TCGA-Z4-AAPF-01 12 52910467 52910467 C T KRT5 Missense_Mutation p.V465M 0.14 tolerated(0.18) possibly_damaging(0.523) TCGA-Z4-AAPF-01 14 65268039 65268039 G A SPTB Missense_Mutation p.R243C 0.28 deleterious(0.01) possibly_damaging(0.74) TCGA-Z4-AAPF-01 15 89745019 89745019 G A ABHD2 3'UTR 0.39 TCGA-Z4-AAPF-01 18 31325862 31325862 C A ASXL3 Missense_Mutation p.P2017Q 0.40 possibly_damaging(0.476) TCGA-Z4-AAPF-01 19 47920949 47920949 G T MEIS3 Intron 0.15 TCGA-Z4-AAPF-01 19 648399 648399 G C RNF126 Missense_Mutation p.D253E 0.50 deleterious(0.02) benign(0.429) TCGA-Z4-AAPF-01 1 154422415 154422415 A G IL6R Missense_Mutation p.N342S 0.07 tolerated(0.66) benign(0.007) TCGA-Z4-AAPF-01 1 228362561 228362561 C T IBA57 Silent p.C170C 0.12 TCGA-Z4-AAPF-01 1 65157848 65157848 A G CACHD1 3'UTR 0.35 TCGA-Z4-AAPF-01 22 24106451 24106451 C A C22orf15 Silent p.T39T 0.12 TCGA-Z4-AAPF-01 4 48097218 48097218 C A TXK Missense_Mutation p.V175F 0.25 deleterious(0) probably_damaging(0.943) TCGA-Z4-AAPF-01 4 95506840 95506840 C T PDLIM5 Nonsense_Mutation p.Q176* 0.24 TCGA-Z4-AAPF-01 5 131927091 131927091 A G RAD50 Missense_Mutation p.K543R 0.36 tolerated(0.15) benign(0.023) TCGA-Z4-AAPF-01 5 167855148 167855148 T C WWC1 Splice_Site p.X640_splice 0.43 TCGA-Z4-AAPF-01 5 41929978 41929978 A C FBXO4 Missense_Mutation p.E202A 0.33 deleterious(0.01) possibly_damaging(0.583) TCGA-Z4-AAPF-01 8 124132405 124132405 T C TBC1D31 Missense_Mutation p.F516S 0.43 deleterious(0) probably_damaging(0.997) TCGA-Z4-AAPF-01 8 56737232 56737232 C T TGS1 Silent p.D844D 0.43 TCGA-Z4-AAPF-01 8 67511292 67511292 T C MYBL1 Missense_Mutation p.D95G 0.33 deleterious(0) probably_damaging(1) TCGA-Z4-AAPF-01 9 111701960 111701960 G A FAM206A Silent p.T180T 0.07 TCGA-Z4-AAPF-01 9 32635503 32635503 G A TAF1L Silent p.S25S 0.20 TCGA-Z4-AAPG-01 10 19778020 19778020 G A MALRD1 Silent p.E1028E 0.11 TCGA-Z4-AAPG-01 10 5791316 5791316 G A FAM208B Missense_Mutation p.E1978K 0.06 deleterious(0) probably_damaging(0.998) TCGA-Z4-AAPG-01 10 94228696 94228696 G T IDE Missense_Mutation p.H754N 0.86 tolerated(0.64) benign(0.01) TCGA-Z4-AAPG-01 11 22242681 22242681 C T ANO5 Silent p.F73F 0.71 TCGA-Z4-AAPG-01 11 65637630 65637630 G C EFEMP2 Missense_Mutation p.P190R 0.70 deleterious(0.03) probably_damaging(0.928) TCGA-Z4-AAPG-01 11 66613938 66613938 T C RCE1 3'UTR 0.73 TCGA-Z4-AAPG-01 12 109095036 109095036 T C CORO1C Missense_Mutation p.N20S 0.62 tolerated(0.11) benign(0.127) TCGA-Z4-AAPG-01 12 114793374 114793374 C A TBX5 Missense_Mutation p.G507V 0.21 tolerated(0.15) benign(0.01) TCGA-Z4-AAPG-01 12 12483640 12483640 C A MANSC1 Missense_Mutation p.S206I 0.18 deleterious(0) benign(0.384) TCGA-Z4-AAPG-01 12 6078426 6078426 G T VWF Silent p.G2560G 0.60 TCGA-Z4-AAPG-01 13 28367862 28367862 T A GSX1 Missense_Mutation p.V191E 0.26 deleterious(0) probably_damaging(1) TCGA-Z4-AAPG-01 13 50275994 50275994 C G KPNA3 Missense_Mutation p.G503A 0.27 tolerated(0.35) benign(0.003) TCGA-Z4-AAPG-01 13 58301374 58301374 T C PCDH17 3'UTR 0.44 TCGA-Z4-AAPG-01 14 100576061 100576061 G C EVL Intron 0.07 TCGA-Z4-AAPG-01 14 102963417 102963417 C T TECPR2 Silent p.T1297T 0.06 TCGA-Z4-AAPG-01 15 20649520 20649520 T C HERC2P3 RNA 0.38 TCGA-Z4-AAPG-01 15 43482568 43482568 G C CCNDBP1 Silent p.A158A 0.79 TCGA-Z4-AAPG-01 16 14738206 14738206 G A BFAR Translation_Start_Site p.M1? 0.75 deleterious_low_confidence(0.03) benign(0.114) TCGA-Z4-AAPG-01 16 17451890 17451890 C T XYLT1 Silent p.P127P 0.74 TCGA-Z4-AAPG-01 17 21730946 21730946 C T UBBP4 Missense_Mutation p.T83I 0.45 deleterious(0.03) probably_damaging(0.974) TCGA-Z4-AAPG-01 17 30981519 30981519 G T MYO1D Silent p.A822A 0.19 TCGA-Z4-AAPG-01 17 45924895 45924895 G T SP6 Missense_Mutation p.L301M 0.17 deleterious(0) probably_damaging(0.999) TCGA-Z4-AAPG-01 17 56567216 56567216 A G MTMR4 3'UTR 0.04 TCGA-Z4-AAPG-01 17 62856660 62856660 C A LRRC37A3 Nonsense_Mutation p.E1202* 0.07 TCGA-Z4-AAPG-01 17 6380417 6380417 C T PITPNM3 Silent p.P339P 0.49 TCGA-Z4-AAPG-01 19 33168051 33168051 C T RGS9BP 3'UTR 0.18 TCGA-Z4-AAPG-01 19 7929527 7929527 C T EVI5L 3'Flank 0.16 TCGA-Z4-AAPG-01 1 244640895 244640895 C A C1orf101 Missense_Mutation p.T56N 0.14 tolerated(0.31) benign(0.109) TCGA-Z4-AAPG-01 1 5934716 5934716 C T NPHP4 Missense_Mutation p.V1016I 0.14 tolerated(0.33) benign(0.026) TCGA-Z4-AAPG-01 21 14778707 14778707 C G MIR3156-3 RNA 0.77 TCGA-Z4-AAPG-01 22 31740562 31740562 C T PATZ1 Missense_Mutation p.D343N 0.69 tolerated(0.11) possibly_damaging(0.89) TCGA-Z4-AAPG-01 2 100900776 100900776 C T LONRF2 Missense_Mutation p.R750K 0.69 tolerated_low_confidence(0.64) benign(0.002) TCGA-Z4-AAPG-01 2 196619234 196619234 C A DNAH7 Missense_Mutation p.W3864L 0.28 deleterious(0) probably_damaging(1) TCGA-Z4-AAPG-01 2 207530749 207530749 G A DYTN Missense_Mutation p.L329F 0.56 tolerated(0.13) benign(0.085) TCGA-Z4-AAPG-01 2 220371491 220371491 C T GMPPA Nonsense_Mutation p.R412* 0.36 TCGA-Z4-AAPG-01 2 225659678 225659678 G A DOCK10 Missense_Mutation p.S1691F 0.28 deleterious(0) probably_damaging(0.998) TCGA-Z4-AAPG-01 2 97276511 97276511 C T KANSL3 Missense_Mutation p.R424Q 0.51 tolerated(0.12) benign(0.113) TCGA-Z4-AAPG-01 3 11888239 11888239 G C TAMM41 5'UTR 0.43 TCGA-Z4-AAPG-01 3 197476829 197476829 C A FYTTD1 5'UTR 0.14 TCGA-Z4-AAPG-01 4 142153779 142153779 A G ZNF330 Missense_Mutation p.K224R 0.47 deleterious(0.03) possibly_damaging(0.774) TCGA-Z4-AAPG-01 4 144449085 144449085 T C SMARCA5 Missense_Mutation p.M289T 0.47 deleterious(0.01) benign(0.062) TCGA-Z4-AAPG-01 4 62936150 62936150 C A LPHN3 Missense_Mutation p.H1312N 0.11 tolerated_low_confidence(0.13) benign(0.029) TCGA-Z4-AAPG-01 5 102891772 102891772 A C NUDT12 Missense_Mutation p.L275R 0.58 deleterious(0) probably_damaging(0.971) TCGA-Z4-AAPG-01 5 126250558 126250558 G A MARCH3 Intron 0.10 TCGA-Z4-AAPG-01 5 146080608 146080608 C T PPP2R2B Silent p.E59E 0.21 TCGA-Z4-AAPG-01 5 160720917 160720917 A C GABRB2 3'UTR 0.20 TCGA-Z4-AAPG-01 5 56219632 56219632 T A MIER3 Missense_Mutation p.T360S 0.39 tolerated(1) benign(0.047) TCGA-Z4-AAPG-01 6 166571913 166571913 G T T Missense_Mutation p.L400M 0.72 tolerated(0.34) benign(0.013) TCGA-Z4-AAPG-01 6 33084812 33084812 A G HLA-DPB2 RNA 0.12 TCGA-Z4-AAPG-01 6 36891153 36891153 A G C6orf89 Missense_Mutation p.Y334C 0.77 tolerated(0.05) probably_damaging(0.931) TCGA-Z4-AAPG-01 6 70462205 70462205 A G LMBRD1 Silent p.P117P 0.06 TCGA-Z4-AAPG-01 7 127013660 127013660 G A ZNF800 Missense_Mutation p.P577L 0.88 tolerated(0.25) benign(0.002) TCGA-Z4-AAPG-01 7 21603913 21603913 A G DNAH11 Silent p.L364L 0.15 TCGA-Z4-AAPG-01 8 75764330 75764330 A T PI15 3'UTR 0.42 TCGA-Z4-AAPG-01 8 81571895 81571895 C T ZNF704 Silent p.S319S 0.22 TCGA-Z4-AAPG-01 9 136262381 136262381 C A C9orf96 Silent p.I319I 0.08 TCGA-Z4-AAPG-01 9 32632655 32632655 G A TAF1L Missense_Mutation p.P975S 0.38 deleterious(0) probably_damaging(0.999) TCGA-Z4-AAPG-01 9 32632679 32632679 G C TAF1L Missense_Mutation p.L967V 0.41 deleterious(0) probably_damaging(0.994) TCGA-Z4-AAPG-01 9 32632965 32632965 G A TAF1L Silent p.F871F 0.26 TCGA-Z4-AAPG-01 9 32632977 32632977 G C TAF1L Silent p.L867L 0.29 TCGA-Z4-AAPG-01 9 32633008 32633008 G A TAF1L Missense_Mutation p.S857L 0.27 deleterious(0) possibly_damaging(0.45) TCGA-Z4-AAPG-01 X 100509889 100509889 C T DRP2 Missense_Mutation p.S719F 0.29 deleterious(0) possibly_damaging(0.714) TCGA-Z4-AAPG-01 X 1537001 1537001 C A ASMTL Missense_Mutation p.G463C 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-Z4-AAPG-01 X 15721279 15721279 C T CA5BP1 RNA 0.44