sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2G-AAEW-01 11 71932007 71932007 C G FOLR2 Missense_Mutation p.H82D 0.14 deleterious(0) probably_damaging(0.987) TCGA-2G-AAEW-01 11 73070882 73070882 C T ARHGEF17 Missense_Mutation p.A1364V 0.21 deleterious(0.02) possibly_damaging(0.53) TCGA-2G-AAEW-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.23 deleterious(0) possibly_damaging(0.479) TCGA-2G-AAEW-01 16 11348860 11348860 C A SOCS1 Missense_Mutation p.R159L 0.17 deleterious(0.01) benign(0.35) TCGA-2G-AAEW-01 16 84227812 84227812 G A ADAD2 Missense_Mutation p.A207T 0.15 tolerated_low_confidence(0.63) benign(0.003) TCGA-2G-AAEW-01 17 26677527 26677527 G T POLDIP2 Missense_Mutation p.H282Q 0.14 deleterious(0.01) probably_damaging(0.937) TCGA-2G-AAEW-01 1 15709722 15709722 A C FHAD1 3'UTR 0.25 TCGA-2G-AAEW-01 1 161018593 161018595 CTC - ARHGAP30 In_Frame_Del p.G739del 0.23 TCGA-2G-AAEW-01 1 231075188 231075188 G T TTC13 Missense_Mutation p.Q282K 0.12 tolerated(0.08) possibly_damaging(0.794) TCGA-2G-AAEW-01 1 9779982 9779982 T C PIK3CD Missense_Mutation p.C416R 0.21 tolerated(0.26) probably_damaging(0.992) TCGA-2G-AAEW-01 20 46264898 46264898 A C NCOA3 Silent p.R590R 0.14 TCGA-2G-AAEW-01 22 21354471 21354471 A G THAP7 Missense_Mutation p.S210P 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-2G-AAEW-01 3 123665686 123665686 A T CCDC14 Missense_Mutation p.L396M 0.17 deleterious(0) probably_damaging(0.934) TCGA-2G-AAEW-01 6 47678504 47678504 A G GPR115 Missense_Mutation p.N61S 0.11 tolerated(0.62) benign(0.005) TCGA-2G-AAEW-01 7 100173407 100173407 T C LRCH4 Splice_Site p.X593_splice 0.15 TCGA-2G-AAEW-01 X 1501338 1501338 C G IL3RA Missense_Mutation p.Q373E 0.16 deleterious(0.02) possibly_damaging(0.508) TCGA-2G-AAEX-01 11 92573793 92573793 T A FAT3 Missense_Mutation p.N3478K 0.20 probably_damaging(1) TCGA-2G-AAEX-01 12 120616506 120616506 C A GCN1L1 Missense_Mutation p.Q194H 0.19 benign(0) TCGA-2G-AAEX-01 12 2743461 2743461 A C CACNA1C Splice_Site p.X1325_splice 0.14 TCGA-2G-AAEX-01 15 63881082 63881082 G A USP3 Intron 0.09 TCGA-2G-AAEX-01 16 24567688 24567688 C - RBBP6 Frame_Shift_Del p.F198Lfs*2 0.11 TCGA-2G-AAEX-01 16 31129017 31129017 A G KAT8 Silent p.G5G 0.21 TCGA-2G-AAEX-01 16 88705614 88705614 A G IL17C Missense_Mutation p.R78G 0.05 tolerated(0.09) benign(0.001) TCGA-2G-AAEX-01 17 21188117 21188117 C T MAP2K3 5'UTR 0.08 TCGA-2G-AAEX-01 17 40028012 40028012 G A ACLY Missense_Mutation p.P956L 0.17 deleterious(0) possibly_damaging(0.876) TCGA-2G-AAEX-01 17 49338191 49338191 G A UTP18 Silent p.E82E 0.17 TCGA-2G-AAEX-01 18 56148955 56148955 G A ALPK2 3'UTR 0.05 TCGA-2G-AAEX-01 19 9048471 9048471 T C MUC16 Missense_Mutation p.S11054G 0.08 benign(0.291) TCGA-2G-AAEX-01 1 228554833 228554843 GACCAGTTTGA - OBSCN Frame_Shift_Del p.Q7487Pfs*59 0.09 TCGA-2G-AAEX-01 1 54269668 54269668 C G NDC1 Missense_Mutation p.Q333H 0.19 deleterious(0) probably_damaging(1) TCGA-2G-AAEX-01 20 47782664 47782664 C G STAU1 Missense_Mutation p.Q25H 0.19 tolerated_low_confidence(0.15) possibly_damaging(0.781) TCGA-2G-AAEX-01 20 60899145 60899145 G A LAMA5 Missense_Mutation p.P1920L 0.11 benign(0.059) TCGA-2G-AAEX-01 2 120362541 120362541 G T PCDP1 Missense_Mutation p.L334F 0.17 deleterious(0) probably_damaging(0.959) TCGA-2G-AAEX-01 2 179599514 179599514 A G TTN Missense_Mutation p.V5046A 0.13 TCGA-2G-AAEX-01 3 111667853 111667858 TGCTGA - PHLDB2 In_Frame_Del p.D858_A859del 0.07 TCGA-2G-AAEX-01 3 119378799 119378799 A C POPDC2 Missense_Mutation p.S158A 0.10 deleterious(0.04) probably_damaging(1) TCGA-2G-AAEX-01 3 130110226 130110226 G C COL6A5 Missense_Mutation p.R874T 0.19 deleterious(0) benign(0.206) TCGA-2G-AAEX-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.11 deleterious(0.02) probably_damaging(0.959) TCGA-2G-AAEX-01 5 162909769 162909769 G A HMMR Missense_Mutation p.E503K 0.20 tolerated(0.16) benign(0.253) TCGA-2G-AAEX-01 6 1313401 1313401 C G FOXQ1 Silent p.P154P 0.15 TCGA-2G-AAEX-01 6 30919139 30919139 A G DPCR1 Silent p.E966E 0.21 TCGA-2G-AAEX-01 7 29994942 29994942 G A SCRN1 Missense_Mutation p.T85I 0.13 deleterious(0.04) probably_damaging(1) TCGA-2G-AAEX-01 9 138662153 138662153 G A KCNT1 Silent p.Q543Q 0.14 TCGA-2G-AAEX-01 9 140379046 140379046 G A PNPLA7 Silent p.S780S 0.12 TCGA-2G-AAF1-01 10 32323677 32323677 T C KIF5B Missense_Mutation p.N351S 0.07 tolerated(0.77) benign(0.005) TCGA-2G-AAF1-01 10 76970938 76970938 T A VDAC2 5'UTR 0.12 TCGA-2G-AAF1-01 11 118416169 118416169 G A IFT46 Silent p.S309S 0.11 TCGA-2G-AAF1-01 12 69050092 69050092 A G RAP1B Missense_Mutation p.M111V 0.08 tolerated(0.23) benign(0.277) TCGA-2G-AAF1-01 1 152082981 152082981 C T TCHH Silent p.Q904Q 0.12 TCGA-2G-AAF1-01 20 13260477 13260477 C T ISM1 Missense_Mutation p.P192L 0.08 tolerated(0.21) benign(0.136) TCGA-2G-AAF1-01 3 111997684 111997684 G T SLC9C1 Silent p.A70A 0.06 TCGA-2G-AAF1-01 3 53264545 53264545 G C TKT Silent p.S353S 0.06 TCGA-2G-AAF1-01 4 41992569 41992569 C A SLC30A9 5'UTR 0.16 TCGA-2G-AAF1-01 4 55599320 55599320 G T KIT Missense_Mutation p.D816Y 0.13 deleterious(0) probably_damaging(0.963) TCGA-2G-AAF1-01 5 34823512 34823512 T C RAI14 Missense_Mutation p.F525S 0.08 tolerated(0.1) benign(0.071) TCGA-2G-AAF1-01 7 128524127 128524127 G T KCP RNA 0.16 TCGA-2G-AAF4-01 11 18301271 18301271 C T HPS5 3'UTR 0.08 TCGA-2G-AAF4-01 11 57576927 57576927 C G CTNND1 Missense_Mutation p.I808M 0.25 deleterious(0) probably_damaging(0.969) TCGA-2G-AAF4-01 12 25380276 25380276 T A KRAS Missense_Mutation p.Q61L 0.13 deleterious(0) probably_damaging(0.94) TCGA-2G-AAF4-01 15 65490079 65490079 C T CILP Missense_Mutation p.V849I 0.15 deleterious(0.04) probably_damaging(0.987) TCGA-2G-AAF4-01 16 30749732 30749732 C A SRCAP Missense_Mutation p.P2791T 0.16 unknown(0) TCGA-2G-AAF4-01 16 88786808 88786808 G A PIEZO1 Silent p.G1978G 0.15 TCGA-2G-AAF4-01 1 43868935 43868935 C - SZT2 Frame_Shift_Del p.L39Cfs*91 0.14 TCGA-2G-AAF4-01 2 173349559 173349559 A G ITGA6 Silent p.L533L 0.17 TCGA-2G-AAF4-01 2 216209567 216209568 CT - ATIC Frame_Shift_Del p.S432Cfs*29 0.13 TCGA-2G-AAF4-01 3 124456529 124456529 A C UMPS Missense_Mutation p.E142A 0.10 tolerated(0.56) benign(0.042) TCGA-2G-AAF4-01 6 150346542 150346542 C G RAET1L Missense_Mutation p.W22C 0.08 tolerated(0.22) probably_damaging(0.984) TCGA-2G-AAF4-01 8 24814108 24814108 A G CTD-2168K21.2 5'Flank 0.07 TCGA-2G-AAF4-01 9 139360565 139360565 A G SEC16A Silent p.N1384N 0.10 TCGA-2G-AAF6-01 10 55583018 55583018 T C PCDH15 Missense_Mutation p.I1492V 0.25 tolerated_low_confidence(0.31) benign(0.005) TCGA-2G-AAF6-01 11 4674157 4674157 G T OR51E1 Missense_Mutation p.R134L 0.06 deleterious(0) possibly_damaging(0.652) TCGA-2G-AAF6-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.18 deleterious(0) possibly_damaging(0.479) TCGA-2G-AAF6-01 13 92345961 92345961 G A GPC5 Silent p.L282L 0.44 TCGA-2G-AAF6-01 14 96772134 96772134 C A ATG2B Missense_Mutation p.V1509F 0.28 deleterious(0) benign(0.049) TCGA-2G-AAF6-01 15 50581739 50581739 G C GABPB1 Missense_Mutation p.S287C 0.21 deleterious(0.01) possibly_damaging(0.554) TCGA-2G-AAF6-01 19 17396520 17396520 A C ANKLE1 Missense_Mutation p.I523L 0.29 deleterious(0.01) possibly_damaging(0.633) TCGA-2G-AAF6-01 19 2933452 2933452 T C ZNF77 3'UTR 0.14 TCGA-2G-AAF6-01 1 160264296 160264298 TCT - COPA In_Frame_Del p.E893del 0.23 TCGA-2G-AAF6-01 1 21102422 21102422 G C HP1BP3 Intron 0.26 TCGA-2G-AAF6-01 22 50728449 50728449 C A PLXNB2 Missense_Mutation p.D189Y 0.17 tolerated(0.66) benign(0.034) TCGA-2G-AAF6-01 3 142841544 142841544 C G CHST2 3'UTR 0.22 TCGA-2G-AAF6-01 3 86010725 86010725 A G CADM2 Missense_Mutation p.N293D 0.15 deleterious(0.01) probably_damaging(0.951) TCGA-2G-AAF6-01 3 93780000 93780000 C G DHFRL1 Missense_Mutation p.S119T 0.15 deleterious(0.03) benign(0.121) TCGA-2G-AAF6-01 5 153435684 153435684 A C MFAP3 3'UTR 0.36 TCGA-2G-AAF6-01 5 41009457 41009457 C T MROH2B Silent p.G1115G 0.12 TCGA-2G-AAF6-01 6 170159980 170159980 C A ERMARD Missense_Mutation p.L218M 0.21 deleterious(0) probably_damaging(0.999) TCGA-2G-AAF6-01 6 33424120 33424120 A G ZBTB9 Missense_Mutation p.I415V 0.20 tolerated(1) benign(0.002) TCGA-2G-AAF6-01 7 100421432 100421432 C - EPHB4 Frame_Shift_Del p.G82Afs*78 0.12 TCGA-2G-AAF6-01 7 100803884 100803884 C A AP1S1 3'UTR 0.07 TCGA-2G-AAF6-01 7 5781139 5781139 A T RNF216 Missense_Mutation p.V170D 0.19 deleterious_low_confidence(0.02) benign(0.394) TCGA-2G-AAF6-01 7 94167043 94167043 T G CASD1 Nonsense_Mutation p.L368* 0.23 TCGA-2G-AAF6-01 8 110498968 110498968 A T PKHD1L1 Missense_Mutation p.E3266D 0.17 tolerated(0.21) benign(0.093) TCGA-2G-AAF6-01 8 117861253 117861254 CT - RAD21 Frame_Shift_Del p.G547Rfs*26 0.15 TCGA-2G-AAF8-01 11 490432 490432 G A PTDSS2 Silent p.L438L 0.18 TCGA-2G-AAF8-01 14 24620535 24620535 C T RNF31 Missense_Mutation p.H562Y 0.18 tolerated(0.07) benign(0.001) TCGA-2G-AAF8-01 17 27493959 27493959 G T MYO18A 5'UTR 0.06 TCGA-2G-AAF8-01 17 45925774 45925774 A C SP6 Missense_Mutation p.S8A 0.33 deleterious_low_confidence(0.01) benign(0.024) TCGA-2G-AAF8-01 19 12816532 12816532 G C TNPO2 Silent p.L573L 0.08 TCGA-2G-AAF8-01 19 42814216 42814216 C G PRR19 Silent p.A160A 0.14 TCGA-2G-AAF8-01 1 16358965 16358965 G T CLCNKA Missense_Mutation p.G625C 0.16 deleterious(0.02) probably_damaging(0.941) TCGA-2G-AAF8-01 21 36164782 36164782 C T RUNX1 Missense_Mutation p.G365S 0.14 tolerated(0.77) possibly_damaging(0.682) TCGA-2G-AAF8-01 2 10059215 10059215 C T TAF1B Silent p.D439D 0.11 TCGA-2G-AAF8-01 2 166532964 166532964 C A CSRNP3 Missense_Mutation p.A184D 0.19 deleterious(0) probably_damaging(0.998) TCGA-2G-AAF8-01 2 202137405 202137405 G A CASP8 Silent p.L211L 0.15 TCGA-2G-AAF8-01 2 99614631 99614631 C G TSGA10 3'UTR 0.19 TCGA-2G-AAF8-01 3 120469513 120469513 C G GTF2E1 Missense_Mutation p.I38M 0.12 deleterious(0) probably_damaging(0.997) TCGA-2G-AAF8-01 3 193854208 193854208 G A HES1 Silent p.P13P 0.08 TCGA-2G-AAF8-01 5 45353277 45353277 G T HCN1 Nonsense_Mutation p.Y434* 0.06 TCGA-2G-AAF8-01 8 110986360 110986360 G T KCNV1 Missense_Mutation p.S86R 0.09 deleterious(0.01) benign(0.326) TCGA-2G-AAF8-01 8 12881557 12881557 T C KIAA1456 3'UTR 0.20 TCGA-2G-AAF8-01 8 39695678 39695678 G A ADAM2 Silent p.S9S 0.21 TCGA-2G-AAF8-01 9 138719406 138719406 C A CAMSAP1 Missense_Mutation p.S357I 0.34 deleterious(0.01) benign(0.261) TCGA-2G-AAF8-01 9 84608661 84608661 G A SPATA31D1 Silent p.P1092P 0.09 TCGA-2G-AAFE-01 10 91404672 91404672 G A PANK1 Missense_Mutation p.R130C 0.11 tolerated_low_confidence(0.08) benign(0.001) TCGA-2G-AAFE-01 11 121500294 121500294 C - SORL1 3'UTR 0.20 TCGA-2G-AAFE-01 11 55433352 55433352 C A OR4C6 Missense_Mutation p.T237N 0.17 deleterious_low_confidence(0) possibly_damaging(0.884) TCGA-2G-AAFE-01 11 55433353 55433353 C A OR4C6 Silent p.T237T 0.20 TCGA-2G-AAFE-01 11 55433354 55433354 T C OR4C6 Missense_Mutation p.C238R 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-2G-AAFE-01 12 105380211 105380211 G A C12orf45 Silent p.K27K 0.12 TCGA-2G-AAFE-01 12 112690363 112690363 C A HECTD4 Intron 0.14 TCGA-2G-AAFE-01 12 133381341 133381341 C G GOLGA3 Missense_Mutation p.E520Q 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-2G-AAFE-01 12 6964956 6964956 C T USP5 Missense_Mutation p.P92L 0.10 deleterious(0) benign(0.211) TCGA-2G-AAFE-01 14 95562966 95562966 C A DICER1 Missense_Mutation p.A1431S 0.16 tolerated_low_confidence(0.71) benign(0.002) TCGA-2G-AAFE-01 15 92981699 92981699 C T ST8SIA2 Missense_Mutation p.S136F 0.11 probably_damaging(0.992) TCGA-2G-AAFE-01 17 39253663 39253663 G A KRTAP4-8 3'UTR 0.19 TCGA-2G-AAFE-01 17 61557850 61557850 T C ACE Missense_Mutation p.Y270H 0.32 tolerated(0.4) possibly_damaging(0.541) TCGA-2G-AAFE-01 17 72610140 72610140 C T CD300E Missense_Mutation p.A141T 0.17 tolerated(0.26) benign(0.012) TCGA-2G-AAFE-01 17 76482089 76482089 T A DNAH17 Missense_Mutation p.T2396S 0.23 benign(0.002) TCGA-2G-AAFE-01 17 77042730 77042730 G T C1QTNF1 Missense_Mutation p.M83I 0.20 tolerated(0.39) benign(0.003) TCGA-2G-AAFE-01 18 60562289 60562289 G A PHLPP1 Silent p.G704G 0.25 TCGA-2G-AAFE-01 19 42315382 42315382 C T CEACAM3 3'UTR 0.33 TCGA-2G-AAFE-01 19 47700585 47700585 C T SAE1 Missense_Mutation p.L277F 0.14 tolerated(0.07) benign(0.008) TCGA-2G-AAFE-01 19 55753642 55753642 T C PPP6R1 Missense_Mutation p.E246G 0.16 deleterious(0.05) possibly_damaging(0.886) TCGA-2G-AAFE-01 19 7754042 7754042 C T FCER2 3'UTR 0.22 TCGA-2G-AAFE-01 1 15819578 15819578 T G CASP9 Intron 0.19 TCGA-2G-AAFE-01 1 15819579 15819579 G C CASP9 Intron 0.20 TCGA-2G-AAFE-01 1 249143104 249143105 CT - ZNF672 3'UTR 0.11 TCGA-2G-AAFE-01 1 39950403 39950403 G T MACF1 Splice_Site p.X5346_splice 0.23 TCGA-2G-AAFE-01 1 59787212 59787212 A G FGGY 5'UTR 0.22 TCGA-2G-AAFE-01 1 59787213 59787213 G T FGGY 5'UTR 0.22 TCGA-2G-AAFE-01 20 31625524 31625524 G A BPIFB6 Missense_Mutation p.V276M 0.19 deleterious(0.01) possibly_damaging(0.885) TCGA-2G-AAFE-01 21 27136954 27136954 C G GABPA Missense_Mutation p.T331S 0.15 deleterious(0) probably_damaging(0.997) TCGA-2G-AAFE-01 22 24573696 24573696 T C CABIN1 Missense_Mutation p.F2144L 0.19 deleterious_low_confidence(0) benign(0.137) TCGA-2G-AAFE-01 2 179440555 179440555 G T TTN Missense_Mutation p.T23435K 0.17 TCGA-2G-AAFE-01 2 179453414 179453414 A C TTN Missense_Mutation p.V21013G 0.12 TCGA-2G-AAFE-01 2 27165450 27165450 C G DPYSL5 Missense_Mutation p.F424L 0.13 deleterious(0.05) benign(0.001) TCGA-2G-AAFE-01 2 71620586 71620587 AG - ZNF638 Intron 0.21 TCGA-2G-AAFE-01 2 86310262 86310262 C T POLR1A Missense_Mutation p.G254R 0.23 tolerated(0.15) probably_damaging(0.987) TCGA-2G-AAFE-01 3 49459856 49459856 G A AMT Missense_Mutation p.R10C 0.19 tolerated_low_confidence(0.17) benign(0.001) TCGA-2G-AAFE-01 3 52536182 52536182 T C STAB1 Missense_Mutation p.F142S 0.20 deleterious(0) probably_damaging(0.98) TCGA-2G-AAFE-01 3 69168059 69168059 C T LMOD3 Missense_Mutation p.D483N 0.10 tolerated(0.61) benign(0.024) TCGA-2G-AAFE-01 3 9776087 9776087 A G BRPF1 Missense_Mutation p.E88G 0.24 deleterious(0) probably_damaging(0.994) TCGA-2G-AAFE-01 3 9776089 9776089 G T BRPF1 Missense_Mutation p.V89L 0.23 deleterious(0.03) benign(0.018) TCGA-2G-AAFE-01 3 99568485 99568485 G A FILIP1L Missense_Mutation p.H679Y 0.12 deleterious(0.04) benign(0.044) TCGA-2G-AAFE-01 4 1066546 1066546 T A RNF212 3'UTR 0.25 TCGA-2G-AAFE-01 4 55599320 55599320 G T KIT Missense_Mutation p.D816Y 0.39 deleterious(0) probably_damaging(0.963) TCGA-2G-AAFE-01 5 140062772 140062772 T A HARS Silent p.A71A 0.19 TCGA-2G-AAFE-01 5 140961940 140961940 C A DIAPH1 Missense_Mutation p.S208I 0.19 unknown(0) TCGA-2G-AAFE-01 5 37022252 37022252 G T NIPBL Splice_Site p.X1809_splice 0.17 TCGA-2G-AAFE-01 5 66481688 66481688 T C CD180 Missense_Mutation p.D83G 0.12 deleterious(0) probably_damaging(1) TCGA-2G-AAFE-01 6 30691552 30691552 C A TUBB Missense_Mutation p.T238N 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.514) TCGA-2G-AAFE-01 6 35965635 35965635 G A SLC26A8 Silent p.N169N 0.11 TCGA-2G-AAFE-01 7 143792684 143792684 A T OR2A12 Missense_Mutation p.I162F 0.12 tolerated(0.2) benign(0.049) TCGA-2G-AAFE-01 7 143792692 143792692 G T OR2A12 Missense_Mutation p.R164S 0.11 tolerated(0.09) benign(0.128) TCGA-2G-AAFE-01 7 44302625 44302625 G A CAMK2B Missense_Mutation p.L67F 0.06 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-2G-AAFE-01 7 48313136 48313138 TAG AA ABCA13 Frame_Shift_Del p.F1291Lfs*8 0.13 TCGA-2G-AAFE-01 8 11189163 11189163 G A SLC35G5 Missense_Mutation p.G183E 0.20 tolerated(0.11) probably_damaging(1) TCGA-2G-AAFE-01 8 30938722 30938722 G A WRN Missense_Mutation p.M393I 0.13 deleterious(0.03) benign(0.259) TCGA-2G-AAFE-01 8 52321563 52321563 G A PXDNL Missense_Mutation p.P874L 0.12 deleterious(0) benign(0.103) TCGA-2G-AAFE-01 8 67428168 67428168 C T C8orf46 Missense_Mutation p.L161F 0.20 tolerated(0.08) probably_damaging(0.996) TCGA-2G-AAFE-01 8 7721053 7721053 G T SPAG11A Missense_Mutation p.G108V 0.12 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-2G-AAFE-01 9 114305381 114305381 C G ZNF483 Missense_Mutation p.N722K 0.18 tolerated(0.54) possibly_damaging(0.832) TCGA-2G-AAFE-01 9 91926110 91926127 GTTAGTCTCCGGCGAGTT - CKS2 5'UTR 0.10 TCGA-2G-AAFE-01 X 117053497 117053497 A G KLHL13 Missense_Mutation p.F189S 0.21 deleterious(0) probably_damaging(0.975) TCGA-2G-AAFE-01 X 23748982 23748982 T A ACOT9 Missense_Mutation p.S105C 0.21 deleterious(0) probably_damaging(0.967) TCGA-2G-AAFE-01 X 32591877 32591877 A G DMD Silent p.R563R 0.26 TCGA-2G-AAFE-01 X 50054033 50054033 C T CCNB3 Missense_Mutation p.P955L 0.19 tolerated(0.3) benign(0.012) TCGA-2G-AAFE-01 X 54569721 54569721 G T GNL3L Missense_Mutation p.A158S 0.21 tolerated(0.07) benign(0.046) TCGA-2G-AAFG-01 10 70412305 70412305 C G TET1 Missense_Mutation p.T1472S 0.18 deleterious(0) possibly_damaging(0.521) TCGA-2G-AAFG-01 17 17398427 17398427 G A RASD1 3'UTR 0.28 TCGA-2G-AAFG-01 17 30469471 30469488 CCGCCGCCGCCGCCGCCG - AC090616.2 In_Frame_Del p.R84_R89del 0.30 TCGA-2G-AAFG-01 17 30536465 30536465 G T RHOT1 Splice_Site p.X612_splice 0.09 TCGA-2G-AAFG-01 17 48821082 48821082 T A LUC7L3 Missense_Mutation p.S148T 0.18 tolerated(0.4) unknown(0) TCGA-2G-AAFG-01 17 56166723 56166723 C T DYNLL2 3'UTR 0.29 TCGA-2G-AAFG-01 19 30106401 30106401 G T POP4 3'UTR 0.12 TCGA-2G-AAFG-01 19 45284237 45284237 G T CBLC Missense_Mutation p.K143N 0.07 tolerated(0.22) benign(0.035) TCGA-2G-AAFG-01 19 53667667 53667667 A G ZNF665 3'UTR 0.15 TCGA-2G-AAFG-01 19 5667118 5667118 G T SAFB Missense_Mutation p.G799V 0.19 deleterious(0.02) unknown(0) TCGA-2G-AAFG-01 1 150325638 150325638 C A PRPF3 3'UTR 0.08 TCGA-2G-AAFG-01 1 221054636 221054636 C G HLX Missense_Mutation p.N231K 0.15 deleterious(0.01) benign(0.246) TCGA-2G-AAFG-01 1 235345007 235345007 C G ARID4B Missense_Mutation p.G1076A 0.16 deleterious(0.03) probably_damaging(0.998) TCGA-2G-AAFG-01 1 82436031 82436031 T A LPHN2 Missense_Mutation p.F906I 0.13 deleterious(0) possibly_damaging(0.885) TCGA-2G-AAFG-01 3 151093929 151093929 G A MED12L Missense_Mutation p.C1292Y 0.14 deleterious(0) probably_damaging(0.988) TCGA-2G-AAFG-01 6 27776148 27776148 C T HIST1H2AI Missense_Mutation p.A54V 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2G-AAFG-01 6 33652420 33652420 C G ITPR3 Missense_Mutation p.R1698G 0.20 tolerated(0.19) benign(0.013) TCGA-2G-AAFG-01 7 128490068 128490068 A G FLNC Silent p.E1746E 0.27 TCGA-2G-AAFG-01 8 103277378 103277378 C A UBR5 Missense_Mutation p.R2517S 0.10 deleterious(0) probably_damaging(0.929) TCGA-2G-AAFG-01 9 135275424 135275424 T C TTF1 Missense_Mutation p.Q530R 0.20 deleterious(0) possibly_damaging(0.572) TCGA-2G-AAFG-01 9 99581871 99581871 C A ZNF782 Missense_Mutation p.C145F 0.10 tolerated(0.68) benign(0) TCGA-2G-AAFG-01 X 152991228 152991228 C A ABCD1 Missense_Mutation p.H169Q 0.17 deleterious(0.04) possibly_damaging(0.807) TCGA-2G-AAFG-01 X 92927246 92927246 G C NAP1L3 Missense_Mutation p.P353R 0.26 deleterious(0) probably_damaging(0.983) TCGA-2G-AAFH-01 12 53002138 53002138 C T KRT73 Missense_Mutation p.G489R 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.657) TCGA-2G-AAFH-01 14 57271040 57271040 G A OTX2 Missense_Mutation p.R47C 0.16 deleterious(0) probably_damaging(1) TCGA-2G-AAFH-01 16 88677720 88677721 - GAGCGG ZC3H18 In_Frame_Ins p.E422_R423dup 0.12 TCGA-2G-AAFH-01 17 16285479 16285479 C G UBB Silent p.G86G 0.12 TCGA-2G-AAFH-01 17 29496939 29496939 C T NF1 Silent p.D170D 0.13 TCGA-2G-AAFH-01 17 36997456 36997456 G A C17orf98 Missense_Mutation p.L63F 0.17 tolerated(0.09) benign(0.007) TCGA-2G-AAFH-01 17 42928599 42928599 G A EFTUD2 3'UTR 0.07 TCGA-2G-AAFH-01 17 73237088 73237088 C A GGA3 Missense_Mutation p.D333Y 0.11 deleterious(0) possibly_damaging(0.839) TCGA-2G-AAFH-01 19 37211070 37211071 TG - ZNF567 Frame_Shift_Del p.C451Wfs*5 0.13 TCGA-2G-AAFH-01 19 44127457 44127457 G T CADM4 3'UTR 0.10 TCGA-2G-AAFH-01 19 7615464 7615464 C T PNPLA6 Nonsense_Mutation p.Q679* 0.13 TCGA-2G-AAFH-01 19 9407511 9407511 G C ZNF699 Missense_Mutation p.T190S 0.14 tolerated(0.28) benign(0.005) TCGA-2G-AAFH-01 1 109235136 109235136 G C PRPF38B 5'UTR 0.21 TCGA-2G-AAFH-01 1 19483407 19483407 G A UBR4 Nonsense_Mutation p.Q1925* 0.15 TCGA-2G-AAFH-01 1 205538281 205538281 C T MFSD4 Silent p.F28F 0.05 TCGA-2G-AAFH-01 1 93300360 93300361 - AT RPL5 Frame_Shift_Ins p.M73Ifs*2 0.17 TCGA-2G-AAFH-01 20 43726455 43726455 G A KCNS1 Silent p.L320L 0.25 TCGA-2G-AAFH-01 21 37705948 37705948 G T MORC3 Missense_Mutation p.C15F 0.13 deleterious(0) possibly_damaging(0.781) TCGA-2G-AAFH-01 21 46909431 46909431 C T COL18A1 Missense_Mutation p.A832V 0.10 benign(0.095) TCGA-2G-AAFH-01 22 37912055 37912055 C A CARD10 Missense_Mutation p.M208I 0.13 tolerated(0.29) benign(0.017) TCGA-2G-AAFH-01 2 179399008 179399008 A T TTN Missense_Mutation p.S34112T 0.29 TCGA-2G-AAFH-01 2 242163124 242163124 C G ANO7 Missense_Mutation p.D874E 0.23 deleterious(0) probably_damaging(0.998) TCGA-2G-AAFH-01 2 84838859 84838859 A T DNAH6 Missense_Mutation p.D1119V 0.14 deleterious(0) probably_damaging(0.999) TCGA-2G-AAFH-01 3 57107627 57107627 C T SPATA12 5'UTR 0.24 TCGA-2G-AAFH-01 5 42799496 42799496 G C CCDC152 Missense_Mutation p.R193T 0.18 tolerated(0.07) benign(0.033) TCGA-2G-AAFH-01 6 26045698 26045698 G A HIST1H3C Silent p.Q20Q 0.19 TCGA-2G-AAFH-01 7 100419938 100419938 A C EPHB4 Missense_Mutation p.C255G 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-2G-AAFH-01 8 139629170 139629170 G A COL22A1 Missense_Mutation p.A1286V 0.19 unknown(0) TCGA-2G-AAFH-01 9 131262420 131262420 C T ODF2 Silent p.S792S 0.31 TCGA-2G-AAFI-01 10 63957724 63957724 C T RTKN2 Silent p.R591R 0.40 TCGA-2G-AAFI-01 10 69881408 69881408 A G MYPN Silent p.E71E 0.05 TCGA-2G-AAFI-01 16 1703072 1703072 C A CRAMP1L Missense_Mutation p.P318T 0.13 deleterious(0) possibly_damaging(0.526) TCGA-2G-AAFI-01 16 69358339 69358339 C G VPS4A 3'UTR 0.12 TCGA-2G-AAFI-01 17 60743604 60743604 C T MRC2 Missense_Mutation p.R224C 0.17 deleterious(0) probably_damaging(0.987) TCGA-2G-AAFI-01 20 49509508 49509508 G T ADNP Nonsense_Mutation p.Y581* 0.31 TCGA-2G-AAFI-01 2 54895834 54895834 A T SPTBN1 3'UTR 0.11 TCGA-2G-AAFI-01 3 108189650 108189650 C G MYH15 Missense_Mutation p.R446S 0.14 deleterious(0.01) benign(0.217) TCGA-2G-AAFI-01 3 64133021 64133021 G A PRICKLE2 Missense_Mutation p.S382F 0.43 deleterious(0) possibly_damaging(0.613) TCGA-2G-AAFI-01 6 26021940 26021940 G A HIST1H4A Missense_Mutation p.G12S 0.10 tolerated_low_confidence(0.07) unknown(0) TCGA-2G-AAFI-01 7 16505324 16505324 C G SOSTDC1 5'UTR 0.21 TCGA-2G-AAFI-01 7 20824970 20824970 C T SP8 Missense_Mutation p.G156S 0.07 tolerated(0.76) benign(0.007) TCGA-2G-AAFI-01 7 33407379 33407380 - T BBS9 Frame_Shift_Ins p.A567Cfs*6 0.24 TCGA-2G-AAFI-01 9 71629038 71629039 - GCGGCGGCG PRKACG 5'UTR 0.30 TCGA-2G-AAFJ-01 10 102052770 102052770 C T PKD2L1 Silent p.V605V 0.27 TCGA-2G-AAFJ-01 10 95718362 95718365 TTTC - PIPSL RNA 0.61 TCGA-2G-AAFJ-01 11 66001320 66001320 C G PACS1 Missense_Mutation p.L635V 0.06 tolerated(0.13) probably_damaging(0.999) TCGA-2G-AAFJ-01 12 32908276 32908276 T C YARS2 Missense_Mutation p.Q178R 0.14 tolerated(0.58) benign(0.002) TCGA-2G-AAFJ-01 14 75508402 75508402 A G MLH3 Silent p.D1127D 0.21 TCGA-2G-AAFJ-01 16 30748508 30748508 A T SRCAP Nonsense_Mutation p.K2383* 0.12 TCGA-2G-AAFJ-01 17 11145253 11145253 G T SHISA6 Missense_Mutation p.D172Y 0.11 deleterious(0) probably_damaging(0.997) TCGA-2G-AAFJ-01 17 78023947 78023947 C T CCDC40 Nonsense_Mutation p.Q342* 0.21 TCGA-2G-AAFJ-01 19 13011447 13011447 C G SYCE2 Missense_Mutation p.E108Q 0.16 tolerated(0.2) benign(0.201) TCGA-2G-AAFJ-01 19 3822136 3822136 G C ZFR2 Missense_Mutation p.N478K 0.06 deleterious(0) probably_damaging(0.995) TCGA-2G-AAFJ-01 1 161275422 161275422 G A MPZ 3'UTR 0.40 TCGA-2G-AAFJ-01 1 228557931 228557931 T A OBSCN Missense_Mutation p.W7677R 0.03 probably_damaging(0.994) TCGA-2G-AAFJ-01 1 231403537 231403537 A T GNPAT Silent p.I389I 0.26 TCGA-2G-AAFJ-01 20 57485046 57485046 C G GNAS Missense_Mutation p.Q937E 0.24 deleterious(0) probably_damaging(0.964) TCGA-2G-AAFJ-01 21 43733726 43733726 G A TFF3 Missense_Mutation p.A47V 0.05 tolerated(0.23) benign(0.044) TCGA-2G-AAFJ-01 2 18765887 18765887 C G NT5C1B Missense_Mutation p.E266Q 0.07 tolerated_low_confidence(0.08) possibly_damaging(0.734) TCGA-2G-AAFJ-01 2 39224171 39224171 A T SOS1 Missense_Mutation p.F991L 0.10 tolerated(0.53) benign(0.04) TCGA-2G-AAFJ-01 2 9725475 9725475 C G YWHAQ Splice_Site p.X227_splice 0.03 TCGA-2G-AAFJ-01 3 4774832 4774832 C A ITPR1 Silent p.R1746R 0.05 TCGA-2G-AAFJ-01 4 140270698 140270698 G T NAA15 Missense_Mutation p.W258C 0.05 tolerated(0.18) possibly_damaging(0.6) TCGA-2G-AAFJ-01 4 99801975 99801975 G T EIF4E 3'Flank 0.43 TCGA-2G-AAFJ-01 5 176963683 176963683 G T FAM193B Missense_Mutation p.P251H 0.11 deleterious(0) probably_damaging(1) TCGA-2G-AAFJ-01 5 72168496 72168496 T A TNPO1 Missense_Mutation p.F209L 0.82 tolerated(0.09) benign(0.134) TCGA-2G-AAFJ-01 6 131971271 131971271 G T ENPP3 Missense_Mutation p.D87Y 0.25 deleterious(0) probably_damaging(0.951) TCGA-2G-AAFJ-01 7 149513025 149513025 C A SSPO RNA 0.11 TCGA-2G-AAFJ-01 7 6730638 6730638 C T ZNF12 Missense_Mutation p.M645I 0.05 tolerated(0.08) possibly_damaging(0.675) TCGA-2G-AAFJ-01 8 15517060 15517060 A G TUSC3 Silent p.K157K 0.33 TCGA-2G-AAFJ-01 9 139835465 139835465 C T FBXW5 Missense_Mutation p.R539H 0.29 deleterious(0) probably_damaging(0.999) TCGA-2G-AAFJ-01 9 19050445 19050453 TCGACATCT - RRAGA In_Frame_Del p.D264_F266del 0.54 TCGA-2G-AAFL-01 11 1271589 1271589 C T MUC5B Silent p.S4493S 0.12 TCGA-2G-AAFL-01 11 68216457 68216457 C T LRP5 Silent p.S1589S 0.13 TCGA-2G-AAFL-01 11 8673378 8673378 C T TRIM66 5'UTR 0.18 TCGA-2G-AAFL-01 12 3040319 3040319 A C TULP3 Missense_Mutation p.R203S 0.12 deleterious(0) benign(0.233) TCGA-2G-AAFL-01 14 100847625 100847625 G A WDR25 Missense_Mutation p.V122I 0.11 tolerated_low_confidence(0.45) benign(0.055) TCGA-2G-AAFL-01 14 106173780 106173780 G C IGHA1 Missense_Mutation p.R263G 0.03 deleterious(0.03) possibly_damaging(0.776) TCGA-2G-AAFL-01 14 21830430 21830430 A G SUPT16H Silent p.Y573Y 0.07 TCGA-2G-AAFL-01 17 18023051 18023051 G T MYO15A Nonsense_Mutation p.E313* 0.06 TCGA-2G-AAFL-01 17 39092824 39092824 G T KRT23 Missense_Mutation p.P11H 0.11 tolerated(0.17) benign(0.006) TCGA-2G-AAFL-01 1 103488447 103488447 C A COL11A1 Missense_Mutation p.D366Y 0.12 probably_damaging(0.991) TCGA-2G-AAFL-01 1 113243219 113243219 G C MOV10 3'UTR 0.12 TCGA-2G-AAFL-01 1 114524091 114524091 C T OLFML3 Silent p.D307D 0.12 TCGA-2G-AAFL-01 1 150785719 150785719 G C ARNT Missense_Mutation p.R737G 0.18 tolerated_low_confidence(0.87) benign(0.003) TCGA-2G-AAFL-01 21 35144498 35144498 G A ITSN1 Silent p.E392E 0.10 TCGA-2G-AAFL-01 2 196581655 196581655 C T SLC39A10 Missense_Mutation p.T664I 0.09 deleterious(0.02) probably_damaging(0.984) TCGA-2G-AAFL-01 4 186064425 186064425 C T SLC25A4 5'UTR 0.11 TCGA-2G-AAFL-01 5 118965473 118965473 C T FAM170A Nonsense_Mutation p.R4* 0.20 TCGA-2G-AAFL-01 5 149323894 149323894 C T PDE6A Missense_Mutation p.V115I 0.10 tolerated(0.1) possibly_damaging(0.897) TCGA-2G-AAFL-01 6 161533755 161533755 G A MAP3K4 Silent p.A1525A 0.05 TCGA-2G-AAFL-01 6 28134497 28134497 C T ZNF192P1 RNA 0.10 TCGA-2G-AAFL-01 7 113518008 113518008 C T PPP1R3A Missense_Mutation p.D1047N 0.06 tolerated(0.14) benign(0.001) TCGA-2G-AAFL-01 7 45121371 45121371 C T NACAD Missense_Mutation p.V1390M 0.05 deleterious(0.03) benign(0.007) TCGA-2G-AAFL-01 7 94183874 94183874 A T CASD1 Missense_Mutation p.K705I 0.13 deleterious(0) probably_damaging(0.922) TCGA-2G-AAFL-01 8 133826993 133826993 C T PHF20L1 Missense_Mutation p.R348C 0.10 deleterious(0) probably_damaging(0.998) TCGA-2G-AAFL-01 8 22548865 22548865 G - EGR3 Frame_Shift_Del p.N96Tfs*11 0.08 TCGA-2G-AAFL-01 8 6302344 6302344 G A MCPH1 Silent p.P367P 0.06 TCGA-2G-AAFL-01 9 35449748 35449748 G T ATP8B5P RNA 0.15 TCGA-2G-AAFL-01 X 85218961 85218961 G A CHM Silent p.A137A 0.26 TCGA-2G-AAFM-01 12 56995665 56995665 G - BAZ2A Frame_Shift_Del p.L1248Wfs*26 0.15 TCGA-2G-AAFM-01 12 57030097 57030097 C T BAZ2A 5'UTR 0.11 TCGA-2G-AAFM-01 13 114321726 114321726 G A GRK1 Missense_Mutation p.V9M 0.22 tolerated(0.12) probably_damaging(0.994) TCGA-2G-AAFM-01 14 105412772 105412772 G A AHNAK2 Missense_Mutation p.P3006S 0.23 probably_damaging(0.996) TCGA-2G-AAFM-01 14 21162164 21162164 G A ANG Silent p.P147P 0.06 TCGA-2G-AAFM-01 15 79587719 79587719 T C ANKRD34C 3'UTR 0.09 TCGA-2G-AAFM-01 17 34077157 34077157 T G GAS2L2 Missense_Mutation p.D189A 0.27 deleterious(0.03) benign(0.162) TCGA-2G-AAFM-01 19 45157245 45157247 TGC - PVR In_Frame_Del p.A268del 0.10 TCGA-2G-AAFM-01 19 48715121 48715121 T A CARD8 Missense_Mutation p.E487V 0.05 deleterious(0) probably_damaging(0.977) TCGA-2G-AAFM-01 19 48715122 48715122 C A CARD8 Nonsense_Mutation p.E487* 0.05 TCGA-2G-AAFM-01 19 50926238 50926238 C A SPIB Missense_Mutation p.L95M 0.11 tolerated(0.17) benign(0.034) TCGA-2G-AAFM-01 1 169680646 169680646 G C SELL Missense_Mutation p.S11R 0.07 tolerated_low_confidence(0.57) benign(0.001) TCGA-2G-AAFM-01 1 226334321 226334321 T C ACBD3 Missense_Mutation p.Y526C 0.13 deleterious(0) probably_damaging(1) TCGA-2G-AAFM-01 1 68512245 68512245 T G DIRAS3 3'UTR 0.27 TCGA-2G-AAFM-01 20 36888929 36888929 C T KIAA1755 5'UTR 0.12 TCGA-2G-AAFM-01 2 112529970 112529970 G A ANAPC1 Silent p.L1889L 0.11 TCGA-2G-AAFM-01 2 178129391 178129393 GGC - NFE2L2 5'UTR 0.47 TCGA-2G-AAFM-01 2 234394589 234394589 T C USP40 Missense_Mutation p.I1089V 0.09 tolerated(0.68) benign(0.008) TCGA-2G-AAFM-01 3 53910015 53910015 C T ACTR8 Missense_Mutation p.V291I 0.15 tolerated(0.44) benign(0.01) TCGA-2G-AAFM-01 5 140501959 140501959 G T PCDHB4 Missense_Mutation p.D127Y 0.20 deleterious_low_confidence(0) probably_damaging(1) TCGA-2G-AAFM-01 5 140773368 140773368 A G PCDHGA8 Missense_Mutation p.R330G 0.19 deleterious_low_confidence(0.01) benign(0.199) TCGA-2G-AAFM-01 7 121513544 121513544 C A PTPRZ1 5'UTR 0.06 TCGA-2G-AAFM-01 8 144991455 144991455 C A PLEC Missense_Mutation p.W4315C 0.10 probably_damaging(0.999) TCGA-2G-AAFM-01 8 92033608 92033608 G T TMEM55A Missense_Mutation p.A44D 0.18 deleterious(0.01) possibly_damaging(0.575) TCGA-2G-AAFM-01 X 11140028 11140028 C T HCCS 3'UTR 0.19 TCGA-2G-AAFM-01 X 148713418 148713419 - CGCCGC TMEM185A 5'UTR 0.49 TCGA-2G-AAFM-01 X 65253547 65253547 C A VSIG4 Missense_Mutation p.G61C 0.31 deleterious(0.01) possibly_damaging(0.894) TCGA-2G-AAFN-01 11 65363219 65363219 G A KCNK7 Nonsense_Mutation p.R9* 0.05 TCGA-2G-AAFN-01 12 57883073 57883073 G A MARS Nonsense_Mutation p.W75* 0.21 TCGA-2G-AAFN-01 13 50590789 50590789 G T TRIM13 3'Flank 0.05 TCGA-2G-AAFN-01 14 81670290 81670290 A T GTF2A1 Silent p.P97P 0.34 TCGA-2G-AAFN-01 15 69238736 69238736 G A SPESP1 Missense_Mutation p.R288Q 0.08 tolerated(0.84) benign(0.003) TCGA-2G-AAFN-01 15 75015057 75015057 C A CYP1A1 Nonsense_Mutation p.G128* 0.24 TCGA-2G-AAFN-01 16 50707354 50707354 G T SNX20 Missense_Mutation p.T305N 0.22 tolerated(0.08) possibly_damaging(0.548) TCGA-2G-AAFN-01 16 68057112 68057112 C G DDX28 5'UTR 0.33 TCGA-2G-AAFN-01 17 7290430 7290430 G T TNK1 Missense_Mutation p.G457C 0.05 deleterious(0.01) possibly_damaging(0.606) TCGA-2G-AAFN-01 19 1004822 1004822 C T GRIN3B Missense_Mutation p.A441V 0.05 deleterious(0) benign(0.352) TCGA-2G-AAFN-01 1 235577756 235577756 C G TBCE Missense_Mutation p.T65R 0.11 tolerated(0.17) possibly_damaging(0.582) TCGA-2G-AAFN-01 1 84880407 84880407 C T DNASE2B Silent p.G314G 0.04 TCGA-2G-AAFN-01 1 85573731 85573731 G A WDR63 Nonsense_Mutation p.W523* 0.24 TCGA-2G-AAFN-01 22 32072978 32072978 G C PRR14L 3'Flank 0.17 TCGA-2G-AAFN-01 22 32072995 32072995 A C PRR14L 3'Flank 0.18 TCGA-2G-AAFN-01 4 138450831 138450831 A G PCDH18 Silent p.S804S 0.49 TCGA-2G-AAFN-01 5 149737264 149737264 A G TCOF1 5'Flank 0.19 TCGA-2G-AAFN-01 X 118774680 118774680 C G SEPT6 Silent p.R254R 0.08 TCGA-2G-AAFN-01 X 134993829 134993829 G C SAGE1 Missense_Mutation p.E746D 0.19 tolerated(0.12) possibly_damaging(0.879) TCGA-2G-AAFO-01 10 126631712 126631712 C G ZRANB1 Missense_Mutation p.P217R 0.12 tolerated(0.14) probably_damaging(0.961) TCGA-2G-AAFO-01 11 32955965 32955965 A G QSER1 Missense_Mutation p.Q925R 0.24 deleterious(0.02) probably_damaging(0.993) TCGA-2G-AAFO-01 12 15803897 15803897 G A EPS8 Nonsense_Mutation p.R432* 0.05 TCGA-2G-AAFO-01 12 54676581 54676581 C T HNRNPA1 Intron 0.13 TCGA-2G-AAFO-01 13 23909053 23909053 C A SACS Missense_Mutation p.D2988Y 0.17 possibly_damaging(0.695) TCGA-2G-AAFO-01 14 21238469 21238469 A G EDDM3B Missense_Mutation p.M54V 0.12 deleterious(0.03) possibly_damaging(0.893) TCGA-2G-AAFO-01 17 171132 171133 - CCG RPH3AL In_Frame_Ins p.A50dup 0.11 TCGA-2G-AAFO-01 17 66339910 66339910 G A ARSG Silent p.A128A 0.05 TCGA-2G-AAFO-01 18 56985879 56985879 G A CPLX4 5'UTR 0.21 TCGA-2G-AAFO-01 1 225528369 225528369 G A DNAH14 Silent p.E2652E 0.26 TCGA-2G-AAFO-01 1 246927615 246927615 A T SCCPDH Missense_Mutation p.K353M 0.23 deleterious(0.03) possibly_damaging(0.61) TCGA-2G-AAFO-01 22 45279175 45279175 C A PHF21B Nonsense_Mutation p.E463* 0.12 TCGA-2G-AAFO-01 3 148460521 148460521 A G AGTR1 3'UTR 0.10 TCGA-2G-AAFO-01 4 118006336 118006336 G A TRAM1L1 Missense_Mutation p.L72F 0.17 tolerated(0.52) benign(0.071) TCGA-2G-AAFO-01 5 169309671 169309671 T A FAM196B Missense_Mutation p.D411V 0.13 tolerated(0.19) probably_damaging(0.944) TCGA-2G-AAFO-01 X 80370324 80370324 C A HMGN5 Missense_Mutation p.D225Y 0.03 deleterious_low_confidence(0) unknown(0) TCGA-2G-AAFV-01 10 52751091 52751091 C T PRKG1 5'UTR 0.10 TCGA-2G-AAFV-01 11 35440503 35440503 G A SLC1A2 Missense_Mutation p.T4M 0.28 deleterious_low_confidence(0.03) benign(0.002) TCGA-2G-AAFV-01 12 40076502 40076502 A G C12orf40 Missense_Mutation p.Y259C 0.24 deleterious(0) possibly_damaging(0.717) TCGA-2G-AAFV-01 12 40757322 40757322 C T LRRK2 Missense_Mutation p.L2383F 0.25 deleterious(0.01) possibly_damaging(0.866) TCGA-2G-AAFV-01 12 57390343 57390343 T A GPR182 3'UTR 0.25 TCGA-2G-AAFV-01 13 26133183 26133183 G T ATP8A2 Missense_Mutation p.A446S 0.09 deleterious(0.02) probably_damaging(0.926) TCGA-2G-AAFV-01 14 36194331 36194332 CT - RALGAPA1 Frame_Shift_Del p.R588Sfs*56 0.13 TCGA-2G-AAFV-01 16 72003963 72003963 A C PKD1L3 RNA 0.36 TCGA-2G-AAFV-01 17 4016010 4016010 G A ZZEF1 Missense_Mutation p.A320V 0.05 deleterious(0.01) probably_damaging(0.992) TCGA-2G-AAFV-01 19 35800891 35800891 G A MAG Missense_Mutation p.R449H 0.14 deleterious(0.04) probably_damaging(0.959) TCGA-2G-AAFV-01 1 203098167 203098167 C T ADORA1 Silent p.A66A 0.07 TCGA-2G-AAFV-01 1 54871734 54871734 T C SSBP3 5'UTR 0.26 TCGA-2G-AAFV-01 1 76228425 76228425 C G ACADM Missense_Mutation p.H419D 0.15 tolerated(0.17) probably_damaging(0.953) TCGA-2G-AAFV-01 20 1961480 1961480 T G PDYN Missense_Mutation p.K85T 0.33 tolerated(0.07) benign(0.055) TCGA-2G-AAFV-01 20 39751878 39751894 ACCCAGCGGGAGAAGTT - TOP1 Frame_Shift_Del p.T747Cfs*5 0.22 TCGA-2G-AAFV-01 22 39132280 39132280 C T SUN2 Missense_Mutation p.A737T 0.07 tolerated(0.14) benign(0.001) TCGA-2G-AAFV-01 2 230668944 230668944 C G TRIP12 Splice_Site p.X809_splice 0.14 TCGA-2G-AAFV-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.05 TCGA-2G-AAFV-01 2 54001465 54001465 G A CHAC2 Missense_Mutation p.G120S 0.05 deleterious(0) probably_damaging(0.996) TCGA-2G-AAFV-01 3 12856660 12856660 G A CAND2 Missense_Mutation p.D343N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-2G-AAFV-01 3 137942567 137942567 C T ARMC8 Silent p.L129L 0.17 TCGA-2G-AAFV-01 4 102839288 102839288 C A BANK1 Missense_Mutation p.A383E 0.04 tolerated(0.14) possibly_damaging(0.787) TCGA-2G-AAFV-01 4 129789057 129789057 G T JADE1 Missense_Mutation p.R517L 0.18 tolerated(0.39) benign(0.388) TCGA-2G-AAFV-01 4 44449883 44449883 C G KCTD8 Missense_Mutation p.V220L 0.32 deleterious(0.04) benign(0.003) TCGA-2G-AAFV-01 6 111136394 111136394 T C CDK19 5'UTR 0.16 TCGA-2G-AAFV-01 6 150267564 150267564 A T ULBP2 Missense_Mutation p.S136C 0.13 deleterious(0) probably_damaging(0.928) TCGA-2G-AAFV-01 7 26904152 26904152 A T SKAP2 5'UTR 0.23 TCGA-2G-AAFV-01 7 86577164 86577164 A C KIAA1324L Missense_Mutation p.S129A 0.26 deleterious(0) probably_damaging(0.999) TCGA-2G-AAFV-01 8 68208839 68208839 G A ARFGEF1 Missense_Mutation p.L156F 0.19 deleterious(0) probably_damaging(0.999) TCGA-2G-AAFY-01 10 68687000 68687000 G A LRRTM3 Missense_Mutation p.R109H 0.06 deleterious(0.01) probably_damaging(1) TCGA-2G-AAFY-01 10 8006560 8006560 C T TAF3 Nonsense_Mutation p.Q363* 0.13 TCGA-2G-AAFY-01 14 96968812 96968812 T G PAPOLA 5'UTR 0.26 TCGA-2G-AAFY-01 15 43470879 43470879 G A TMEM62 Missense_Mutation p.V486M 0.10 tolerated(0.21) benign(0.046) TCGA-2G-AAFY-01 17 17109307 17109307 C A PLD6 Silent p.L98L 0.21 TCGA-2G-AAFY-01 17 7982769 7982769 G A ALOX12B Missense_Mutation p.P339L 0.16 deleterious(0) probably_damaging(1) TCGA-2G-AAFY-01 19 13058807 13058807 T A RAD23A Missense_Mutation p.V73D 0.13 deleterious(0) probably_damaging(0.999) TCGA-2G-AAFY-01 19 7998431 7998431 G A TIMM44 Silent p.H236H 0.17 TCGA-2G-AAFY-01 1 203453089 203453089 C T PRELP Silent p.N259N 0.13 TCGA-2G-AAFY-01 1 53580475 53580475 C T SLC1A7 Missense_Mutation p.G129E 0.06 tolerated(0.1) possibly_damaging(0.551) TCGA-2G-AAFY-01 22 21799538 21799538 C A HIC2 Silent p.T118T 0.09 TCGA-2G-AAFY-01 2 131524915 131524915 G A AMER3 3'UTR 0.17 TCGA-2G-AAFY-01 5 150436337 150436337 G T TNIP1 Missense_Mutation p.S206Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-2G-AAFY-01 7 66453322 66453322 A T SBDS 3'UTR 0.09 TCGA-2G-AAFZ-01 11 113775694 113775694 C A HTR3B Silent p.I13I 0.43 TCGA-2G-AAFZ-01 12 53471008 53471008 G A SPRYD3 Missense_Mutation p.H21Y 0.04 deleterious_low_confidence(0) possibly_damaging(0.651) TCGA-2G-AAFZ-01 12 53471009 53471009 C G SPRYD3 Silent p.L20L 0.04 TCGA-2G-AAFZ-01 12 7174944 7174944 T G C1S Intron 0.32 TCGA-2G-AAFZ-01 12 81760903 81760903 T A PPFIA2 Missense_Mutation p.E510V 0.22 deleterious(0) benign(0.152) TCGA-2G-AAFZ-01 13 100192991 100192991 G T TM9SF2 Silent p.A284A 0.46 TCGA-2G-AAFZ-01 16 1841105 1841105 C T IGFALS Silent p.E476E 0.25 TCGA-2G-AAFZ-01 16 67876460 67876460 G T THAP11 Translation_Start_Site p.M1? 0.39 deleterious(0) benign(0.019) TCGA-2G-AAFZ-01 16 68119617 68119617 G A NFATC3 Silent p.E11E 0.37 TCGA-2G-AAFZ-01 16 71805154 71805154 G T AP1G1 Missense_Mutation p.A157E 0.07 deleterious(0) probably_damaging(1) TCGA-2G-AAFZ-01 17 7339839 7339839 G C TMEM102 Missense_Mutation p.E181Q 0.41 tolerated_low_confidence(0.55) benign(0.013) TCGA-2G-AAFZ-01 19 51628989 51628989 C T SIGLEC9 Missense_Mutation p.S186F 0.35 deleterious(0.03) benign(0.119) TCGA-2G-AAFZ-01 19 53886177 53886177 G T ZNF525 3'UTR 0.06 TCGA-2G-AAFZ-01 19 900917 900917 C T R3HDM4 Silent p.E129E 0.05 TCGA-2G-AAFZ-01 1 153122229 153122229 T C SPRR2G 3'UTR 0.48 TCGA-2G-AAFZ-01 20 34300982 34300982 G A RBM39 Missense_Mutation p.A378V 0.41 tolerated(0.08) benign(0.119) TCGA-2G-AAFZ-01 21 19666630 19666630 C T TMPRSS15 Missense_Mutation p.V815I 0.05 tolerated(0.63) benign(0.088) TCGA-2G-AAFZ-01 21 35476994 35476994 G T SLC5A3 3'UTR 0.27 TCGA-2G-AAFZ-01 22 28559107 28559107 C T TTC28 Missense_Mutation p.A472T 0.46 tolerated(0.25) probably_damaging(0.976) TCGA-2G-AAFZ-01 22 28559108 28559108 A G TTC28 Silent p.A471A 0.47 TCGA-2G-AAFZ-01 2 10198979 10198979 C T CYS1 3'UTR 0.12 TCGA-2G-AAFZ-01 2 230650472 230650472 C T TRIP12 Splice_Site p.X1623_splice 0.53 TCGA-2G-AAFZ-01 2 24246462 24246462 G A MFSD2B Silent p.L393L 0.09 TCGA-2G-AAFZ-01 2 73519001 73519001 T A EGR4 Missense_Mutation p.T452S 0.58 tolerated(0.79) benign(0.001) TCGA-2G-AAFZ-01 3 127395400 127395400 G A ABTB1 Missense_Mutation p.A168T 0.06 deleterious(0.03) possibly_damaging(0.864) TCGA-2G-AAFZ-01 3 19975292 19975292 T A EFHB Silent p.G73G 0.08 TCGA-2G-AAFZ-01 3 55504144 55504144 G A WNT5A Silent p.I373I 0.11 TCGA-2G-AAFZ-01 3 89480495 89480495 G C EPHA3 Missense_Mutation p.A778P 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-2G-AAFZ-01 4 13485931 13485931 C G RAB28 5'UTR 0.37 TCGA-2G-AAFZ-01 4 41992712 41992712 G C SLC30A9 Missense_Mutation p.W15S 0.48 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-2G-AAFZ-01 4 83867529 83867529 C A LIN54 Missense_Mutation p.Q350H 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-2G-AAFZ-01 6 12125357 12125357 G A HIVEP1 Missense_Mutation p.V1777M 0.09 tolerated(0.08) benign(0.046) TCGA-2G-AAFZ-01 6 31639021 31639021 C G CSNK2B-LY6G5B-1181 Missense_Mutation p.Q216E 0.04 tolerated_low_confidence(0.16) benign(0.042) TCGA-2G-AAFZ-01 6 46659709 46659709 G A TDRD6 Missense_Mutation p.G1282R 0.18 tolerated(0.08) benign(0.021) TCGA-2G-AAFZ-01 7 4830438 4830438 C T AP5Z1 Silent p.P691P 0.21 TCGA-2G-AAFZ-01 8 101206561 101206561 T G SPAG1 Intron 0.35 TCGA-2G-AAFZ-01 8 145806589 145806590 - CACTCACC ARHGAP39 Frame_Shift_Ins p.C51Wfs*62 0.09 TCGA-2G-AAG0-01 10 23270572 23270572 G A ARMC3 Missense_Mutation p.R373Q 0.19 deleterious(0.05) benign(0.037) TCGA-2G-AAG0-01 10 63995874 63995874 G T RTKN2 Missense_Mutation p.L213I 0.05 deleterious(0.02) benign(0.133) TCGA-2G-AAG0-01 11 122848423 122848423 G C BSX Silent p.T212T 0.24 TCGA-2G-AAG0-01 11 130068300 130068300 C T ST14 Silent p.D519D 0.06 TCGA-2G-AAG0-01 12 7947397 7947397 C G NANOG Missense_Mutation p.N208K 0.12 tolerated(0.06) benign(0.086) TCGA-2G-AAG0-01 16 3367499 3367499 C G ZNF75A Missense_Mutation p.S174C 0.19 deleterious(0) probably_damaging(0.984) TCGA-2G-AAG0-01 16 55601279 55601279 T A CAPNS2 Missense_Mutation p.M204K 0.16 deleterious(0) possibly_damaging(0.534) TCGA-2G-AAG0-01 16 76555039 76555039 T C CNTNAP4 Missense_Mutation p.S717P 0.33 deleterious(0.05) benign(0.027) TCGA-2G-AAG0-01 17 38244622 38244622 G A THRA Missense_Mutation p.R284Q 0.21 deleterious(0.01) possibly_damaging(0.449) TCGA-2G-AAG0-01 17 8280958 8280958 C A RPL26 Missense_Mutation p.R121L 0.33 deleterious(0.01) benign(0.275) TCGA-2G-AAG0-01 19 17838362 17838362 C A MAP1S Silent p.G723G 0.30 TCGA-2G-AAG0-01 19 38388907 38388907 A T WDR87 5'UTR 0.26 TCGA-2G-AAG0-01 1 197115320 197115320 G T ASPM Missense_Mutation p.P83Q 0.18 deleterious(0.01) possibly_damaging(0.907) TCGA-2G-AAG0-01 1 31196429 31196429 G A MATN1 5'UTR 0.18 TCGA-2G-AAG0-01 1 46124749 46124749 T G GPBP1L1 Missense_Mutation p.H4P 0.09 deleterious(0) probably_damaging(0.999) TCGA-2G-AAG0-01 1 99470160 99470160 G A LPPR5 Missense_Mutation p.T23M 0.16 deleterious(0.01) possibly_damaging(0.894) TCGA-2G-AAG0-01 2 101612407 101612407 C T NPAS2 3'UTR 0.18 TCGA-2G-AAG0-01 2 167085326 167085326 C G SCN9A Missense_Mutation p.A1350P 0.06 tolerated(0.38) benign(0) TCGA-2G-AAG0-01 2 189452633 189452633 C T GULP1 Missense_Mutation p.A267V 0.16 deleterious(0.03) benign(0.024) TCGA-2G-AAG0-01 3 138724293 138724293 G T PRR23A 3'UTR 0.16 TCGA-2G-AAG0-01 3 138763612 138763612 C T PRR23C 5'UTR 0.15 TCGA-2G-AAG0-01 3 67578573 67578573 C T SUCLG2 Missense_Mutation p.G134S 0.11 deleterious(0.01) probably_damaging(0.914) TCGA-2G-AAG0-01 3 87289878 87289878 C G CHMP2B Missense_Mutation p.R22G 0.20 deleterious(0) benign(0.283) TCGA-2G-AAG0-01 5 138713761 138713761 C T SLC23A1 Missense_Mutation p.M456I 0.16 deleterious(0.01) benign(0.106) TCGA-2G-AAG0-01 6 393255 393255 G T IRF4 Missense_Mutation p.G35C 0.17 deleterious(0) possibly_damaging(0.553) TCGA-2G-AAG0-01 7 137266651 137266651 G T DGKI Missense_Mutation p.N529K 0.06 deleterious(0) probably_damaging(0.999) TCGA-2G-AAG0-01 7 139756947 139756947 G A PARP12 Nonsense_Mutation p.Q157* 0.26 TCGA-2G-AAG0-01 7 94214734 94214734 T C SGCE 3'UTR 0.29 TCGA-2G-AAG0-01 8 116599271 116599271 G T TRPS1 Nonsense_Mutation p.S886* 0.13 TCGA-2G-AAG0-01 9 125330483 125330485 TCT - OR1L8 In_Frame_Del p.K91del 0.19 TCGA-2G-AAG3-01 10 108338921 108338921 G T SORCS1 Missense_Mutation p.P1154T 0.06 tolerated(0.16) benign(0.202) TCGA-2G-AAG3-01 11 199447 199447 C A ODF3 Missense_Mutation p.R205S 0.43 deleterious(0) probably_damaging(0.988) TCGA-2G-AAG3-01 11 70653201 70653201 G A SHANK2 Silent p.Y524Y 0.10 TCGA-2G-AAG3-01 12 122734429 122734429 C T VPS33A Missense_Mutation p.G255D 0.34 deleterious(0.01) probably_damaging(0.956) TCGA-2G-AAG3-01 12 58204191 58204191 C G AVIL Missense_Mutation p.K234N 0.32 tolerated(0.08) benign(0.066) TCGA-2G-AAG3-01 12 7072861 7072861 G A PTPN6 3'Flank 0.10 TCGA-2G-AAG3-01 16 20556521 20556521 C A ACSM2B Missense_Mutation p.R413S 0.31 deleterious(0.02) possibly_damaging(0.669) TCGA-2G-AAG3-01 17 26964994 26964994 C T KIAA0100 Missense_Mutation p.R544H 0.08 deleterious(0.01) possibly_damaging(0.52) TCGA-2G-AAG3-01 17 4574813 4574813 G T PELP1 Missense_Mutation p.T1105K 0.07 benign(0.184) TCGA-2G-AAG3-01 17 73906735 73906735 G T FBF1 3'UTR 0.37 TCGA-2G-AAG3-01 19 10798137 10798137 G A ILF3 Silent p.P729P 0.12 TCGA-2G-AAG3-01 19 45681488 45681488 G T TRAPPC6A 5'UTR 0.05 TCGA-2G-AAG3-01 2 103380804 103380804 C G TMEM182 Silent p.S83S 0.33 TCGA-2G-AAG3-01 2 223918008 223918008 C T KCNE4 Missense_Mutation p.P154S 0.26 tolerated(0.53) benign(0.38) TCGA-2G-AAG3-01 2 38527452 38527452 G A ATL2 Nonsense_Mutation p.Q364* 0.26 TCGA-2G-AAG3-01 3 27157448 27157448 G T NEK10 Nonsense_Mutation p.Y1151* 0.37 TCGA-2G-AAG3-01 6 15374463 15374463 G A JARID2 Missense_Mutation p.G54E 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.538) TCGA-2G-AAG3-01 6 88119658 88119658 C G C6ORF165 Missense_Mutation p.A34G 0.43 tolerated(0.08) benign(0.159) TCGA-2G-AAG3-01 8 110569202 110569202 C A EBAG9 Silent p.I120I 0.23 TCGA-2G-AAG3-01 8 124267671 124267671 A G ZHX1 Silent p.S172S 0.21 TCGA-2G-AAG3-01 X 101857554 101857554 C A ARMCX5 Missense_Mutation p.S162Y 0.53 deleterious(0.01) benign(0.178) TCGA-2G-AAG5-01 11 124740969 124740969 G A ROBO3 Missense_Mutation p.A365T 0.39 tolerated(1) benign(0.003) TCGA-2G-AAG5-01 11 20180817 20180817 T C DBX1 Missense_Mutation p.Q130R 0.13 tolerated(0.05) benign(0.086) TCGA-2G-AAG5-01 11 20180818 20180818 G T DBX1 Missense_Mutation p.Q130K 0.13 tolerated(0.09) benign(0.087) TCGA-2G-AAG5-01 14 23528416 23528416 G A ACIN1 Missense_Mutation p.R1323C 0.04 unknown(0) TCGA-2G-AAG5-01 15 98982942 98982942 T A FAM169B Missense_Mutation p.D166V 0.29 deleterious(0) benign(0.043) TCGA-2G-AAG5-01 16 30735366 30735367 - T SRCAP Frame_Shift_Ins p.A1542Gfs*306 0.20 TCGA-2G-AAG5-01 16 49430428 49430428 G C C16orf78 Missense_Mutation p.E163D 0.24 tolerated(1) benign(0.001) TCGA-2G-AAG5-01 16 67326 67326 G A WASH4P Silent p.V183V 0.27 TCGA-2G-AAG5-01 17 48190406 48190406 C A SAMD14 Missense_Mutation p.G397W 0.07 deleterious(0) probably_damaging(1) TCGA-2G-AAG5-01 19 12858375 12858375 G A ASNA1 Missense_Mutation p.R295H 0.41 deleterious(0.01) possibly_damaging(0.811) TCGA-2G-AAG5-01 19 39880019 39880019 G A PAF1 Nonsense_Mutation p.Q122* 0.37 TCGA-2G-AAG5-01 19 831856 831857 - CCGGGA AZU1 In_Frame_Ins p.G249_P250dup 0.32 TCGA-2G-AAG5-01 1 120165430 120165430 G T ZNF697 Silent p.R512R 0.07 TCGA-2G-AAG5-01 1 150526211 150526211 C A ADAMTSL4 Silent p.P248P 0.43 TCGA-2G-AAG5-01 1 24194762 24194762 C G FUCA1 Silent p.G5G 0.16 TCGA-2G-AAG5-01 1 27877165 27877165 G A AHDC1 Missense_Mutation p.R488W 0.06 deleterious(0) possibly_damaging(0.835) TCGA-2G-AAG5-01 1 54871734 54871734 T C SSBP3 5'UTR 0.32 TCGA-2G-AAG5-01 2 114340538 114340538 A T MIR1302-3 RNA 0.04 TCGA-2G-AAG5-01 2 69746110 69746110 C G AAK1 Missense_Mutation p.Q491H 0.11 tolerated(0.25) unknown(0) TCGA-2G-AAG5-01 4 80940116 80940116 G A ANTXR2 Missense_Mutation p.S294L 0.35 tolerated(0.94) benign(0.006) TCGA-2G-AAG5-01 5 139820640 139820640 C G ANKHD1 Missense_Mutation p.L276V 0.11 unknown(0) TCGA-2G-AAG5-01 6 32008457 32008457 C T CYP21A2 Silent p.Y377Y 0.33 TCGA-2G-AAG5-01 6 32037571 32037571 C T TNXB Silent p.L1782L 0.31 TCGA-2G-AAG5-01 7 124386667 124386667 T C GPR37 Missense_Mutation p.N585S 0.45 tolerated(0.21) benign(0.11) TCGA-2G-AAG5-01 7 16918209 16918209 A G AGR3 Silent p.L12L 0.41 TCGA-2G-AAG6-01 10 13541880 13541880 C T BEND7 Missense_Mutation p.V64M 0.30 tolerated_low_confidence(0.12) possibly_damaging(0.804) TCGA-2G-AAG6-01 12 112622476 112622476 T C HECTD4 Missense_Mutation p.I3286V 0.19 benign(0.009) TCGA-2G-AAG6-01 12 123351821 123351821 G T VPS37B Missense_Mutation p.P234T 0.05 tolerated(0.07) benign(0.154) TCGA-2G-AAG6-01 15 75111137 75111137 C T LMAN1L Silent p.T192T 0.19 TCGA-2G-AAG6-01 18 47810855 47810855 G T CXXC1 Silent p.A370A 0.08 TCGA-2G-AAG6-01 19 13423558 13423558 G T CACNA1A Silent p.S531S 0.39 TCGA-2G-AAG6-01 19 36041807 36041807 G T ATP4A Missense_Mutation p.P1003H 0.07 deleterious(0) probably_damaging(0.976) TCGA-2G-AAG6-01 19 39515990 39515990 C T FBXO27 3'UTR 0.42 TCGA-2G-AAG6-01 19 56156936 56156936 A G ZNF581 3'UTR 0.41 TCGA-2G-AAG6-01 1 110459933 110459933 C T CSF1 Missense_Mutation p.L82F 0.33 deleterious(0) probably_damaging(1) TCGA-2G-AAG6-01 1 2252853 2252853 C T MORN1 Missense_Mutation p.S488N 0.40 tolerated_low_confidence(0.22) benign(0.003) TCGA-2G-AAG6-01 1 36565807 36565807 G T COL8A2 Missense_Mutation p.L13M 0.06 deleterious_low_confidence(0.02) unknown(0) TCGA-2G-AAG6-01 3 52668670 52668671 - T PBRM1 Frame_Shift_Ins p.Y417Ifs*3 0.24 TCGA-2G-AAG6-01 9 135140214 135140214 C G SETX Missense_Mutation p.E2482D 0.24 deleterious(0.01) probably_damaging(0.937) TCGA-2G-AAG6-01 9 135940444 135940444 G A CEL Missense_Mutation p.V123I 0.31 deleterious(0.01) probably_damaging(0.997) TCGA-2G-AAG6-01 X 48566043 48566043 T G SUV39H1 3'UTR 0.05 TCGA-2G-AAG7-01 10 133106529 133106529 C T TCERG1L Silent p.P205P 0.42 TCGA-2G-AAG7-01 11 279526 279526 G T NLRP6 Missense_Mutation p.A77S 0.25 deleterious(0.01) probably_damaging(1) TCGA-2G-AAG7-01 11 83180284 83180284 T C DLG2 Missense_Mutation p.Y860C 0.36 deleterious(0) probably_damaging(0.999) TCGA-2G-AAG7-01 15 85681228 85681228 G A PDE8A 3'UTR 0.08 TCGA-2G-AAG7-01 16 69368744 69368744 C A RP11-343C2.12 Missense_Mutation p.G11C 0.19 tolerated(0.08) probably_damaging(0.999) TCGA-2G-AAG7-01 17 65890193 65890193 G T BPTF Nonsense_Mutation p.E819* 0.29 TCGA-2G-AAG7-01 19 11833770 11833770 T C ZNF823 Silent p.K193K 0.31 TCGA-2G-AAG7-01 19 33792544 33792544 C A CEBPA Silent p.A259A 0.70 TCGA-2G-AAG7-01 19 35434283 35434283 A G ZNF30 Missense_Mutation p.H139R 0.27 deleterious(0.03) possibly_damaging(0.862) TCGA-2G-AAG7-01 19 39057585 39057585 C T RYR1 Missense_Mutation p.P4491L 0.26 unknown(0) TCGA-2G-AAG7-01 19 4891239 4891239 G T ARRDC5 Missense_Mutation p.T283K 0.08 tolerated(0.95) benign(0.157) TCGA-2G-AAG7-01 19 49979435 49979435 G C FLT3LG Missense_Mutation p.V60L 0.24 tolerated(0.17) benign(0.237) TCGA-2G-AAG7-01 19 55870578 55870578 G A FAM71E2 Missense_Mutation p.P553L 0.29 tolerated(0.43) benign(0.025) TCGA-2G-AAG7-01 1 152057679 152057679 C G TCHHL1 Missense_Mutation p.A827P 0.05 deleterious(0.02) possibly_damaging(0.694) TCGA-2G-AAG7-01 1 16254718 16254718 G A SPEN Nonsense_Mutation p.W661* 0.28 TCGA-2G-AAG7-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.09 TCGA-2G-AAG7-01 2 74592776 74592776 C G DCTN1 Missense_Mutation p.E965D 0.20 tolerated(0.06) possibly_damaging(0.849) TCGA-2G-AAG7-01 3 52443757 52443757 G - BAP1 Frame_Shift_Del p.L14Sfs*58 0.27 TCGA-2G-AAG7-01 4 4304033 4304033 T C ZBTB49 Missense_Mutation p.L157P 0.08 tolerated(0.16) benign(0.077) TCGA-2G-AAG7-01 5 140784930 140784930 C A PCDHGA9 Missense_Mutation p.T804N 0.32 tolerated_low_confidence(0.48) benign(0.004) TCGA-2G-AAG7-01 6 26027303 26027303 T C HIST1H4B Missense_Mutation p.K60E 0.35 deleterious(0.04) benign(0.435) TCGA-2G-AAG7-01 7 20449503 20449503 G C ITGB8 Missense_Mutation p.K731N 0.20 tolerated(0.11) benign(0.145) TCGA-2G-AAG7-01 7 56119654 56119654 T A CCT6A Missense_Mutation p.L38Q 0.26 deleterious(0) probably_damaging(0.98) TCGA-2G-AAG7-01 7 92157750 92157750 C G PEX1 5'UTR 0.18 TCGA-2G-AAG7-01 7 99277604 99277604 C T CYP3A5 5'UTR 0.26 TCGA-2G-AAG7-01 8 101661751 101661751 G T SNX31 5'UTR 0.21 TCGA-2G-AAG7-01 8 30560672 30560672 G A GSR Missense_Mutation p.A193V 0.28 deleterious(0) probably_damaging(0.998) TCGA-2G-AAG7-01 9 71629038 71629039 - GCGGCGGCG PRKACG 5'UTR 0.47 TCGA-2G-AAG8-01 10 46959756 46959756 C G SYT15 3'Flank 0.21 TCGA-2G-AAG8-01 11 46898070 46898070 C T LRP4 Silent p.L1161L 0.18 TCGA-2G-AAG8-01 14 61441826 61441826 A G TRMT5 3'UTR 0.08 TCGA-2G-AAG8-01 15 40933157 40933157 A G CASC5 Silent p.Q1936Q 0.24 TCGA-2G-AAG8-01 16 21209141 21209141 C T ZP2 Missense_Mutation p.G681R 0.15 tolerated_low_confidence(0.37) benign(0.003) TCGA-2G-AAG8-01 18 2544256 2544256 G T METTL4 Missense_Mutation p.P404Q 0.13 deleterious(0) possibly_damaging(0.897) TCGA-2G-AAG8-01 19 12864150 12864150 C A BEST2 Missense_Mutation p.P77T 0.15 deleterious(0) probably_damaging(1) TCGA-2G-AAG8-01 19 8657036 8657036 G T ADAMTS10 Intron 0.09 TCGA-2G-AAG8-01 1 150549797 150549797 G A MCL1 3'UTR 0.20 TCGA-2G-AAG8-01 1 234040876 234040876 T C SLC35F3 Missense_Mutation p.V18A 0.22 tolerated_low_confidence(0.48) benign(0.003) TCGA-2G-AAG8-01 1 29016676 29016676 A G GMEB1 Missense_Mutation p.I73M 0.08 tolerated(0.12) possibly_damaging(0.486) TCGA-2G-AAG8-01 1 55307355 55307355 C T C1orf177 Intron 0.30 TCGA-2G-AAG8-01 2 172750734 172750734 G A SLC25A12 5'UTR 0.10 TCGA-2G-AAG8-01 2 242610198 242610198 G T ATG4B Splice_Site p.X338_splice 0.19 TCGA-2G-AAG8-01 3 15282061 15282061 T C CAPN7 Missense_Mutation p.W497R 0.15 deleterious(0) probably_damaging(1) TCGA-2G-AAG8-01 3 47890473 47890473 G T DHX30 Missense_Mutation p.G945C 0.05 deleterious(0) probably_damaging(0.979) TCGA-2G-AAG8-01 5 130799747 130799747 G T RAPGEF6 Missense_Mutation p.Q823K 0.05 tolerated(0.06) probably_damaging(0.996) TCGA-2G-AAG8-01 6 121562693 121562693 G T TBC1D32 Missense_Mutation p.S721R 0.07 deleterious(0.01) possibly_damaging(0.642) TCGA-2G-AAG8-01 6 165809921 165809921 A C PDE10A Missense_Mutation p.C436G 0.12 tolerated(0.31) benign(0.057) TCGA-2G-AAG8-01 6 26246971 26246971 G A HIST1H4G Missense_Mutation p.R79C 0.06 deleterious(0.01) possibly_damaging(0.528) TCGA-2G-AAG8-01 7 112115496 112115497 CT - IFRD1 Frame_Shift_Del p.S427Cfs*10 0.17 TCGA-2G-AAG8-01 7 6204910 6204910 G C CYTH3 Missense_Mutation p.S374C 0.11 tolerated(0.44) probably_damaging(0.995) TCGA-2G-AAG8-01 9 127999044 127999044 C T HSPA5 Missense_Mutation p.V598I 0.10 tolerated_low_confidence(0.46) benign(0.03) TCGA-2G-AAG8-01 9 139906169 139906169 G A ABCA2 Silent p.V1856V 0.11 TCGA-2G-AAG8-01 X 46332341 46332341 A G KRBOX4 Missense_Mutation p.D137G 0.03 deleterious(0) benign(0.016) TCGA-2G-AAG9-01 11 118627002 118627002 G T DDX6 Silent p.R381R 0.26 TCGA-2G-AAG9-01 11 66948868 66948871 AAGT - KDM2A Splice_Site p.X87_splice 0.23 TCGA-2G-AAG9-01 12 132404132 132404132 C A ULK1 Missense_Mutation p.Q934K 0.16 deleterious(0.02) benign(0.243) TCGA-2G-AAG9-01 12 25380271 25380271 C T KRAS Missense_Mutation p.E63K 0.19 deleterious(0) possibly_damaging(0.898) TCGA-2G-AAG9-01 12 51445948 51445948 G C LETMD1 Missense_Mutation p.K116N 0.12 tolerated(0.1) benign(0.016) TCGA-2G-AAG9-01 12 53825148 53825148 C T AMHR2 Missense_Mutation p.A538V 0.21 tolerated_low_confidence(0.05) possibly_damaging(0.483) TCGA-2G-AAG9-01 12 65141505 65141505 T C GNS Missense_Mutation p.K149R 0.21 deleterious(0) probably_damaging(1) TCGA-2G-AAG9-01 16 23569548 23569548 C T UBFD1 Silent p.F101F 0.13 TCGA-2G-AAG9-01 16 70680832 70680832 G T IL34 5'UTR 0.21 TCGA-2G-AAG9-01 19 12692507 12692507 T C ZNF490 Missense_Mutation p.K128E 0.15 tolerated(0.36) benign(0.062) TCGA-2G-AAG9-01 19 45971880 45971880 C A FOSB Silent p.G12G 0.05 TCGA-2G-AAG9-01 19 55559896 55559896 C G RDH13 Missense_Mutation p.L153F 0.23 deleterious(0.02) probably_damaging(1) TCGA-2G-AAG9-01 1 74835124 74835124 C A FPGT-TNNI3K Silent p.R622R 0.16 TCGA-2G-AAG9-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.30 TCGA-2G-AAG9-01 22 37891566 37891566 C T CARD10 Silent p.E777E 0.25 TCGA-2G-AAG9-01 2 149501290 149501290 A T EPC2 Missense_Mutation p.Q138L 0.20 deleterious(0) probably_damaging(0.931) TCGA-2G-AAG9-01 2 228882457 228882457 A G SPHKAP Missense_Mutation p.F1038S 0.29 deleterious(0.03) probably_damaging(0.925) TCGA-2G-AAG9-01 2 27677283 27677283 A G IFT172 Silent p.G1156G 0.32 TCGA-2G-AAG9-01 3 47450550 47450550 G C PTPN23 Missense_Mutation p.A539P 0.33 unknown(0) TCGA-2G-AAG9-01 4 55599321 55599321 A T KIT Missense_Mutation p.D816V 0.15 deleterious(0) probably_damaging(0.977) TCGA-2G-AAG9-01 5 138755762 138755762 C T DNAJC18 Missense_Mutation p.C311Y 0.20 deleterious(0) probably_damaging(1) TCGA-2G-AAG9-01 8 125384234 125384234 G T TMEM65 Silent p.G55G 0.15 TCGA-2G-AAG9-01 9 35665184 35665184 G C ARHGEF39 5'UTR 0.29 TCGA-2G-AAG9-01 X 37431145 37431145 G A LANCL3 Missense_Mutation p.A8T 0.05 tolerated(0.52) benign(0.001) TCGA-2G-AAG9-01 X 71493914 71493917 ATTA - RPS4X Intron 0.30 TCGA-2G-AAG9-01 X 71549628 71549628 A G HDAC8 3'UTR 0.05 TCGA-2G-AAGA-01 11 108381652 108381652 G T EXPH5 Missense_Mutation p.P1528T 0.04 tolerated(0.26) benign(0.081) TCGA-2G-AAGA-01 11 126276436 126276436 G T ST3GAL4 Missense_Mutation p.D29Y 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.56) TCGA-2G-AAGA-01 12 49663613 49663613 G A TUBA1C Missense_Mutation p.E77K 0.16 deleterious_low_confidence(0.01) benign(0.143) TCGA-2G-AAGA-01 14 24551760 24551760 G T NRL Missense_Mutation p.Q100K 0.05 tolerated(0.22) possibly_damaging(0.622) TCGA-2G-AAGA-01 14 24780848 24780848 G C LTB4R2 Missense_Mutation p.E326D 0.11 tolerated(0.14) benign(0.057) TCGA-2G-AAGA-01 14 74035905 74035905 G C ACOT2 5'UTR 0.24 TCGA-2G-AAGA-01 16 24826529 24826529 C T TNRC6A Silent p.N1578N 0.18 TCGA-2G-AAGA-01 16 3142732 3142732 G T ZSCAN10 Nonsense_Mutation p.C14* 0.05 TCGA-2G-AAGA-01 16 396715 396715 G T AXIN1 Missense_Mutation p.T104N 0.07 tolerated(0.06) benign(0.024) TCGA-2G-AAGA-01 16 88501768 88501768 G T ZNF469 Missense_Mutation p.K2602N 0.12 possibly_damaging(0.505) TCGA-2G-AAGA-01 17 5012511 5012512 AG - ZNF232 Intron 0.13 TCGA-2G-AAGA-01 17 79866849 79866849 C G PCYT2 Missense_Mutation p.Q81H 0.15 deleterious(0.01) benign(0.269) TCGA-2G-AAGA-01 17 79988252 79988252 C T LRRC45 Silent p.L576L 0.13 TCGA-2G-AAGA-01 19 50462655 50462655 A G SIGLEC11 Missense_Mutation p.L340P 0.05 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGA-01 1 169101270 169101270 T G ATP1B1 3'UTR 0.30 TCGA-2G-AAGA-01 1 17084508 17084508 T C MST1L RNA 0.03 TCGA-2G-AAGA-01 1 23763670 23763670 A G ASAP3 Missense_Mutation p.V432A 0.12 deleterious(0) possibly_damaging(0.622) TCGA-2G-AAGA-01 1 26441057 26441057 C G PDIK1L Missense_Mutation p.H86Q 0.08 tolerated(0.05) probably_damaging(0.943) TCGA-2G-AAGA-01 1 47138732 47138732 C T TEX38 Silent p.Y75Y 0.04 TCGA-2G-AAGA-01 1 53724042 53724042 C A LRP8 Missense_Mutation p.A720S 0.07 tolerated(0.05) probably_damaging(0.968) TCGA-2G-AAGA-01 21 42780164 42780164 G A MX2 3'UTR 0.17 TCGA-2G-AAGA-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.33 TCGA-2G-AAGA-01 22 50920357 50920357 G T ADM2 Silent p.L27L 0.18 TCGA-2G-AAGA-01 2 152320914 152320914 C G RIF1 Missense_Mutation p.T1627S 0.27 tolerated(0.63) benign(0.006) TCGA-2G-AAGA-01 3 128973510 128973510 G T COPG1 Splice_Site p.X108_splice 0.06 TCGA-2G-AAGA-01 4 118006429 118006429 C G TRAM1L1 Missense_Mutation p.E41Q 0.05 tolerated(0.46) benign(0.052) TCGA-2G-AAGA-01 4 20706400 20706400 G C PACRGL Missense_Mutation p.R57T 0.26 deleterious(0.02) possibly_damaging(0.71) TCGA-2G-AAGA-01 4 3319118 3319118 C T RGS12 Silent p.D407D 0.24 TCGA-2G-AAGA-01 5 179250972 179250972 G A SQSTM1 Missense_Mutation p.R139H 0.07 deleterious(0) probably_damaging(1) TCGA-2G-AAGA-01 6 43230837 43230837 G A TTBK1 Missense_Mutation p.E579K 0.06 possibly_damaging(0.54) TCGA-2G-AAGA-01 7 102087325 102087325 C T ORAI2 Silent p.A197A 0.27 TCGA-2G-AAGA-01 7 135406263 135406263 C T SLC13A4 Silent p.S36S 0.18 TCGA-2G-AAGA-01 8 42940420 42940420 C T FNTA Nonsense_Mutation p.Q379* 0.20 TCGA-2G-AAGA-01 8 77761779 77761779 G C ZFHX4 Missense_Mutation p.S1226T 0.09 benign(0.294) TCGA-2G-AAGA-01 8 99608285 99608285 C A STK3 Missense_Mutation p.R294I 0.19 deleterious(0.01) probably_damaging(1) TCGA-2G-AAGA-01 9 101797339 101797339 A G COL15A1 Missense_Mutation p.K708R 0.04 tolerated(0.2) benign(0) TCGA-2G-AAGA-01 X 48935722 48935722 G C WDR45 Missense_Mutation p.S11R 0.09 tolerated(0.32) benign(0.061) TCGA-2G-AAGC-01 12 49426772 49426774 GCT - KMT2D In_Frame_Del p.Q3905del 0.10 TCGA-2G-AAGC-01 14 23524544 23524544 G A CDH24 Missense_Mutation p.R74W 0.16 deleterious(0) probably_damaging(1) TCGA-2G-AAGC-01 15 64386069 64386069 G T FAM96A 5'UTR 0.18 TCGA-2G-AAGC-01 16 16225711 16225711 C A ABCC1 Missense_Mutation p.F1295L 0.09 deleterious(0.02) benign(0.022) TCGA-2G-AAGC-01 19 48024612 48024612 G A ZNF541 Nonsense_Mutation p.R1323* 0.28 TCGA-2G-AAGC-01 1 161693309 161693309 C T FCRLB Missense_Mutation p.P69S 0.19 tolerated(0.07) probably_damaging(0.964) TCGA-2G-AAGC-01 1 3644260 3644260 C T TP73 Missense_Mutation p.A304V 0.12 deleterious(0) possibly_damaging(0.619) TCGA-2G-AAGC-01 1 39340765 39340766 GT - GJA9 Frame_Shift_Del p.L336* 0.20 TCGA-2G-AAGC-01 1 906518 906518 C T PLEKHN1 Missense_Mutation p.A213V 0.07 tolerated(0.22) benign(0.031) TCGA-2G-AAGC-01 1 97235325 97235325 T A PTBP2 Missense_Mutation p.L61H 0.26 deleterious(0) possibly_damaging(0.879) TCGA-2G-AAGC-01 21 34715721 34715721 G A IFNAR1 Missense_Mutation p.G175D 0.27 tolerated(0.69) benign(0.005) TCGA-2G-AAGC-01 22 18845900 18845900 G A BCRP7 Intron 0.08 TCGA-2G-AAGC-01 2 54785915 54785915 A G SPTBN1 Intron 0.22 TCGA-2G-AAGC-01 2 74709738 74709738 C T CCDC142 Missense_Mutation p.R76Q 0.23 tolerated_low_confidence(0.36) benign(0.001) TCGA-2G-AAGC-01 4 125599937 125599937 C T ANKRD50 Silent p.G212G 0.24 TCGA-2G-AAGC-01 5 153435559 153435559 G A MFAP3 3'UTR 0.49 TCGA-2G-AAGC-01 5 61772516 61772516 G A IPO11 Missense_Mutation p.S295N 0.33 tolerated(0.49) benign(0.002) TCGA-2G-AAGC-01 6 159653823 159653823 G A FNDC1 Missense_Mutation p.R760Q 0.12 tolerated_low_confidence(0.77) unknown(0) TCGA-2G-AAGC-01 6 31526067 31526067 G T NFKBIL1 Missense_Mutation p.K275N 0.07 tolerated(0.47) benign(0.029) TCGA-2G-AAGC-01 6 72892035 72892035 G T RIMS1 Missense_Mutation p.K287N 0.10 tolerated(0.09) benign(0.253) TCGA-2G-AAGC-01 8 39079164 39079164 T G ADAM32 Silent p.T423T 0.27 TCGA-2G-AAGC-01 9 37746248 37746248 G A FRMPD1 Missense_Mutation p.A1407T 0.10 tolerated(0.27) benign(0.015) TCGA-2G-AAGC-01 9 91940430 91940430 G A SECISBP2 Missense_Mutation p.A91T 0.33 tolerated(0.56) benign(0.019) TCGA-2G-AAGC-01 X 38146264 38146264 C G RPGR Missense_Mutation p.S663T 0.36 benign(0.001) TCGA-2G-AAGE-01 10 60560687 60560687 A G BICC1 Silent p.R632R 0.32 TCGA-2G-AAGE-01 11 117049945 117049945 G A SIDT2 5'UTR 0.07 TCGA-2G-AAGE-01 12 11244616 11244616 C G TAS2R43 Missense_Mutation p.L71F 0.57 tolerated(1) benign(0.007) TCGA-2G-AAGE-01 16 74748014 74748014 G T FA2H 3'UTR 0.08 TCGA-2G-AAGE-01 17 29527570 29527570 C G NF1 Missense_Mutation p.S340C 0.26 deleterious(0.01) probably_damaging(0.987) TCGA-2G-AAGE-01 17 45376796 45376796 G A ITGB3 Missense_Mutation p.G605S 0.27 deleterious(0) probably_damaging(0.944) TCGA-2G-AAGE-01 17 73484174 73484174 A T KIAA0195 Missense_Mutation p.R191W 0.29 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGE-01 19 36134398 36134398 G A ETV2 Missense_Mutation p.S153N 0.07 tolerated(0.37) benign(0.001) TCGA-2G-AAGE-01 1 153084826 153084826 A C SPRR2F 3'UTR 0.19 TCGA-2G-AAGE-01 1 23763530 23763530 C A ASAP3 Silent p.T450T 0.26 TCGA-2G-AAGE-01 1 28857097 28857097 C T RCC1 Missense_Mutation p.P46S 0.17 deleterious(0.03) benign(0.154) TCGA-2G-AAGE-01 20 58439346 58439346 A G SYCP2 3'UTR 0.02 TCGA-2G-AAGE-01 21 48071767 48071767 G A PRMT2 Intron 0.20 TCGA-2G-AAGE-01 22 29622540 29622540 G C EMID1 Missense_Mutation p.K155N 0.43 deleterious(0.01) benign(0.162) TCGA-2G-AAGE-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.07 TCGA-2G-AAGE-01 3 113098310 113098310 A T WDR52 Missense_Mutation p.M714K 0.42 tolerated(0.27) benign(0.01) TCGA-2G-AAGE-01 3 128889947 128889948 - T CNBP Frame_Shift_Ins p.D133Rfs*9 0.27 TCGA-2G-AAGE-01 4 141545359 141545359 A T TBC1D9 Missense_Mutation p.S997T 0.04 tolerated(0.62) benign(0.002) TCGA-2G-AAGE-01 6 158449830 158449830 C T SYNJ2 Missense_Mutation p.T86I 0.11 tolerated(0.22) benign(0.008) TCGA-2G-AAGE-01 6 33387939 33387941 CTC - SYNGAP1 5'UTR 0.17 TCGA-2G-AAGE-01 6 96654601 96654601 G A FUT9 3'UTR 0.33 TCGA-2G-AAGE-01 7 100420018 100420018 A G EPHB4 Missense_Mutation p.V228A 0.17 tolerated(0.7) benign(0.001) TCGA-2G-AAGE-01 7 33388730 33388730 C T BBS9 Silent p.Y460Y 0.21 TCGA-2G-AAGE-01 7 45122754 45122754 C A NACAD Missense_Mutation p.A1009S 0.23 tolerated(0.08) benign(0.173) TCGA-2G-AAGE-01 7 82595343 82595343 G A PCLO Missense_Mutation p.T1254I 0.20 unknown(0) TCGA-2G-AAGE-01 X 18259186 18259186 A C SCML2 3'UTR 0.21 TCGA-2G-AAGE-01 X 24665186 24665186 C T PCYT1B Missense_Mutation p.G13S 0.41 deleterious_low_confidence(0.02) benign(0.003) TCGA-2G-AAGF-01 10 21805720 21805720 A G SKIDA1 Silent p.H344H 0.12 TCGA-2G-AAGF-01 11 60620376 60620376 C T PTGDR2 Missense_Mutation p.A274T 0.08 tolerated(0.41) benign(0.004) TCGA-2G-AAGF-01 12 32734925 32734925 G T FGD4 Nonsense_Mutation p.E42* 0.04 TCGA-2G-AAGF-01 12 43925836 43925836 T C ADAMTS20 Intron 0.29 TCGA-2G-AAGF-01 13 110435838 110435838 C T IRS2 Missense_Mutation p.G855R 0.50 tolerated(0.11) benign(0.098) TCGA-2G-AAGF-01 16 89782892 89782892 C T VPS9D1 Missense_Mutation p.A137T 0.05 tolerated(0.34) benign(0.006) TCGA-2G-AAGF-01 17 16722514 16722514 G A AC022596.6 RNA 0.08 TCGA-2G-AAGF-01 19 45992653 45992653 G A RTN2 Missense_Mutation p.R398C 0.07 deleterious(0) benign(0.111) TCGA-2G-AAGF-01 1 184767257 184767257 T A FAM129A Missense_Mutation p.Y541F 0.29 deleterious(0) probably_damaging(1) TCGA-2G-AAGF-01 22 50355011 50355011 A G PIM3 Missense_Mutation p.S81G 0.17 tolerated(0.09) benign(0.021) TCGA-2G-AAGF-01 2 18765888 18765888 G C NT5C1B Silent p.S265S 0.06 TCGA-2G-AAGF-01 2 61389989 61389989 G A C2orf74 Silent p.R43R 0.29 TCGA-2G-AAGF-01 4 170345935 170345935 A C NEK1 Missense_Mutation p.D997E 0.09 tolerated(0.26) benign(0.023) TCGA-2G-AAGF-01 6 90088980 90088991 AGTTGTGGAATC - RRAGD In_Frame_Del p.I238_L241del 0.15 TCGA-2G-AAGF-01 7 100466178 100466178 C A TRIP6 Nonsense_Mutation p.S142* 0.29 TCGA-2G-AAGF-01 X 102841017 102841017 C T TCEAL4 5'UTR 0.17 TCGA-2G-AAGF-01 X 153278098 153278098 C G IRAK1 Silent p.S654S 0.26 TCGA-2G-AAGF-01 X 30238190 30238190 A G MAGEB2 3'UTR 0.39 TCGA-2G-AAGG-01 11 55657490 55657490 G T TRIM51 Silent p.L278L 0.07 TCGA-2G-AAGG-01 11 5699638 5699638 G A TRIM5 Silent p.N180N 0.06 TCGA-2G-AAGG-01 11 65350457 65350457 G A EHBP1L1 Missense_Mutation p.A772T 0.22 deleterious(0.02) benign(0.002) TCGA-2G-AAGG-01 12 118469186 118469186 C G RFC5 3'UTR 0.29 TCGA-2G-AAGG-01 12 2983605 2983605 G A FOXM1 Missense_Mutation p.R14W 0.05 deleterious(0) possibly_damaging(0.835) TCGA-2G-AAGG-01 12 45566846 45566846 T A PLEKHA8P1 3'Flank 0.38 TCGA-2G-AAGG-01 12 56398846 56398846 C A SUOX 3'UTR 0.25 TCGA-2G-AAGG-01 13 99449463 99449463 C T DOCK9 Missense_Mutation p.R2035H 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-2G-AAGG-01 15 41819688 41819688 G A RPAP1 Missense_Mutation p.A515V 0.10 tolerated(0.24) benign(0.007) TCGA-2G-AAGG-01 16 67916729 67916729 G A EDC4 Missense_Mutation p.R1197H 0.25 tolerated(0.24) benign(0.004) TCGA-2G-AAGG-01 17 37901196 37901196 C T GRB7 Nonsense_Mutation p.Q347* 0.23 TCGA-2G-AAGG-01 17 45891018 45891018 C G OSBPL7 Missense_Mutation p.E512Q 0.15 deleterious(0) probably_damaging(1) TCGA-2G-AAGG-01 17 7311754 7311754 C G NLGN2 Missense_Mutation p.N60K 0.11 tolerated(0.18) probably_damaging(0.997) TCGA-2G-AAGG-01 17 76162016 76162016 C A C17orf99 Silent p.P229P 0.22 TCGA-2G-AAGG-01 18 33263468 33263468 G T GALNT1 Missense_Mutation p.V199L 0.32 tolerated(0.39) benign(0) TCGA-2G-AAGG-01 18 60191501 60191501 G A ZCCHC2 Missense_Mutation p.E282K 0.42 tolerated(0.12) probably_damaging(0.98) TCGA-2G-AAGG-01 19 1073680 1073680 G A HMHA1 Missense_Mutation p.E236K 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-2G-AAGG-01 19 39669288 39669288 G T PAK4 3'UTR 0.04 TCGA-2G-AAGG-01 19 40366368 40366368 G C FCGBP Missense_Mutation p.D4622E 0.08 probably_damaging(1) TCGA-2G-AAGG-01 19 41081444 41081444 G A SPTBN4 Missense_Mutation p.G2555E 0.20 tolerated(0.53) probably_damaging(0.931) TCGA-2G-AAGG-01 19 46116800 46116800 C A EML2 Missense_Mutation p.R809L 0.09 deleterious(0) probably_damaging(0.914) TCGA-2G-AAGG-01 1 144931737 144931737 C T PDE4DIP Intron 0.13 TCGA-2G-AAGG-01 1 207787775 207787775 G A CR1 Missense_Mutation p.S2201N 0.32 deleterious(0.02) probably_damaging(0.953) TCGA-2G-AAGG-01 1 240071655 240071655 C T CHRM3 Missense_Mutation p.R302C 0.20 deleterious(0.01) possibly_damaging(0.505) TCGA-2G-AAGG-01 1 38270037 38270037 C T YRDC Missense_Mutation p.R235H 0.09 deleterious(0) possibly_damaging(0.719) TCGA-2G-AAGG-01 1 52552589 52552589 G A BTF3L4 3'UTR 0.10 TCGA-2G-AAGG-01 20 52830954 52830954 C G PFDN4 Missense_Mutation p.T30R 0.30 deleterious(0.02) possibly_damaging(0.678) TCGA-2G-AAGG-01 22 46685729 46685729 G T TTC38 Missense_Mutation p.V417F 0.06 deleterious(0) possibly_damaging(0.516) TCGA-2G-AAGG-01 2 241835040 241835040 G A C2orf54 Silent p.T125T 0.10 TCGA-2G-AAGG-01 3 121838400 121838400 A G CD86 3'UTR 0.21 TCGA-2G-AAGG-01 3 132408024 132408024 A C NPHP3 Missense_Mutation p.L926W 0.21 deleterious(0) probably_damaging(0.975) TCGA-2G-AAGG-01 3 195789794 195789794 G T TFRC Missense_Mutation p.S445R 0.07 tolerated(1) benign(0.022) TCGA-2G-AAGG-01 3 4687295 4687295 G A ITPR1 Silent p.E246E 0.24 TCGA-2G-AAGG-01 3 52492740 52492740 C G NISCH Missense_Mutation p.N80K 0.21 deleterious(0.01) benign(0.264) TCGA-2G-AAGG-01 3 73433414 73433414 G T PDZRN3 Missense_Mutation p.P768Q 0.09 deleterious(0.04) possibly_damaging(0.901) TCGA-2G-AAGG-01 4 140005438 140005438 C G ELF2 Intron 0.25 TCGA-2G-AAGG-01 4 148993187 148993187 C G ARHGAP10 Missense_Mutation p.N772K 0.17 tolerated(0.05) possibly_damaging(0.523) TCGA-2G-AAGG-01 4 44176634 44176634 G A KCTD8 3'UTR 0.47 TCGA-2G-AAGG-01 4 77631363 77631363 C A SHROOM3 Missense_Mutation p.S126R 0.35 tolerated(0.05) possibly_damaging(0.451) TCGA-2G-AAGG-01 5 1093664 1093664 C A SLC12A7 Missense_Mutation p.R109L 0.32 tolerated(0.1) benign(0.166) TCGA-2G-AAGG-01 5 23527778 23527778 G A PRDM9 Missense_Mutation p.V861I 0.20 tolerated(0.12) possibly_damaging(0.552) TCGA-2G-AAGG-01 5 38448404 38448404 G T EGFLAM Silent p.T830T 0.05 TCGA-2G-AAGG-01 5 7707008 7707008 G T ADCY2 Missense_Mutation p.V421F 0.07 deleterious(0) probably_damaging(0.94) TCGA-2G-AAGG-01 6 160999712 160999712 C A LPA Missense_Mutation p.R1438S 0.20 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGG-01 6 21598243 21598243 G A SOX4 3'UTR 0.17 TCGA-2G-AAGG-01 7 53103898 53103898 G T POM121L12 Silent p.L178L 0.23 TCGA-2G-AAGG-01 8 24151704 24151704 T G ADAM28 Silent p.V14V 0.18 TCGA-2G-AAGG-01 8 48749779 48749779 T A PRKDC Missense_Mutation p.E2584D 0.20 benign(0.199) TCGA-2G-AAGG-01 9 136234314 136234314 C T SURF4 Missense_Mutation p.R19H 0.14 tolerated(0.05) probably_damaging(0.999) TCGA-2G-AAGG-01 9 19597247 19597247 T C SLC24A2 Missense_Mutation p.Y370C 0.29 tolerated(0.11) probably_damaging(0.922) TCGA-2G-AAGG-01 X 13681576 13681576 C T TCEANC Missense_Mutation p.L347F 0.09 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGG-01 X 22208575 22208575 C T PHEX Missense_Mutation p.P534L 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-2G-AAGI-01 10 70332383 70332383 C G TET1 Silent p.S96S 0.37 TCGA-2G-AAGI-01 12 112641514 112641514 C T HECTD4 Missense_Mutation p.A2632T 0.33 probably_damaging(0.946) TCGA-2G-AAGI-01 12 1755317 1755317 A G WNT5B Missense_Mutation p.K327E 0.41 deleterious(0.01) possibly_damaging(0.755) TCGA-2G-AAGI-01 14 50249093 50249093 G C KLHDC2 Missense_Mutation p.W321S 0.24 deleterious(0) possibly_damaging(0.57) TCGA-2G-AAGI-01 18 29122743 29122743 C T DSG2 Silent p.S754S 0.37 TCGA-2G-AAGI-01 20 31017716 31017716 G A ASXL1 Missense_Mutation p.C193Y 0.09 deleterious(0) benign(0) TCGA-2G-AAGI-01 21 43531009 43531009 G A UMODL1 Missense_Mutation p.M559I 0.23 tolerated(0.43) benign(0.002) TCGA-2G-AAGI-01 22 25755835 25755835 G A LRP5L Silent p.D75D 0.57 TCGA-2G-AAGI-01 2 48026849 48026849 A C MSH6 Missense_Mutation p.D576A 0.35 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGI-01 2 48809124 48809124 A G STON1-GTF2A1L Missense_Mutation p.N451S 0.24 tolerated(1) probably_damaging(0.998) TCGA-2G-AAGI-01 2 54155274 54155274 T C PSME4 Missense_Mutation p.N495D 0.26 deleterious(0) probably_damaging(0.996) TCGA-2G-AAGI-01 3 133648638 133648638 T C C3orf36 5'UTR 0.30 TCGA-2G-AAGI-01 3 4747945 4747945 G T ITPR1 Missense_Mutation p.M1569I 0.25 tolerated(0.24) benign(0) TCGA-2G-AAGI-01 9 19126446 19126446 T C PLIN2 Intron 0.47 TCGA-2G-AAGI-01 X 70679068 70679068 G T TAF1 Intron 0.05 TCGA-2G-AAGJ-01 10 104593813 104593813 T A CYP17A1 Nonsense_Mutation p.K245* 0.22 TCGA-2G-AAGJ-01 11 209070 209070 G A RIC8A Intron 0.11 TCGA-2G-AAGJ-01 11 55944605 55944605 T C OR5J2 Missense_Mutation p.L171P 0.14 tolerated(0.55) benign(0.002) TCGA-2G-AAGJ-01 12 90018056 90018056 A G ATP2B1 Silent p.F416F 0.12 TCGA-2G-AAGJ-01 13 39585418 39585418 C A PROSER1 3'UTR 0.17 TCGA-2G-AAGJ-01 15 69561594 69561594 C G GLCE 3'UTR 0.24 TCGA-2G-AAGJ-01 16 1552339 1552339 G T TELO2 Missense_Mutation p.E529D 0.15 tolerated(0.52) benign(0.06) TCGA-2G-AAGJ-01 16 23614909 23614909 G A PALB2 Silent p.L1144L 0.09 TCGA-2G-AAGJ-01 16 57600650 57600650 T C GPR114 Missense_Mutation p.F229S 0.20 deleterious(0.02) probably_damaging(0.99) TCGA-2G-AAGJ-01 17 79204389 79204389 C T ENTHD2 Silent p.E328E 0.15 TCGA-2G-AAGJ-01 17 80573887 80573887 C T WDR45B Missense_Mutation p.G315S 0.11 deleterious(0) possibly_damaging(0.71) TCGA-2G-AAGJ-01 18 77917648 77917648 G T PARD6G 3'UTR 0.06 TCGA-2G-AAGJ-01 19 50399126 50399126 G A IL4I1 Silent p.G88G 0.16 TCGA-2G-AAGJ-01 1 1273785 1273785 G A DVL1 Silent p.H432H 0.14 TCGA-2G-AAGJ-01 1 173839947 173839947 G C ZBTB37 Missense_Mutation p.S195T 0.20 tolerated(0.1) possibly_damaging(0.497) TCGA-2G-AAGJ-01 1 183259297 183259297 C T NMNAT2 Missense_Mutation p.C96Y 0.19 deleterious(0) probably_damaging(0.976) TCGA-2G-AAGJ-01 20 8000252 8000252 A C TMX4 Silent p.G3G 0.41 TCGA-2G-AAGJ-01 2 135630212 135630212 G T ACMSD Splice_Site p.X283_splice 0.19 TCGA-2G-AAGJ-01 2 233321406 233321406 G A ALPI Splice_Site p.X100_splice 0.18 TCGA-2G-AAGJ-01 3 164709984 164709984 C A SI Missense_Mutation p.R1655L 0.12 tolerated(0.13) probably_damaging(1) TCGA-2G-AAGJ-01 3 5229493 5229493 G T EDEM1 Translation_Start_Site p.M1? 0.09 deleterious_low_confidence(0) benign(0.023) TCGA-2G-AAGJ-01 4 146617775 146617775 G C C4orf51 Missense_Mutation p.D100H 0.09 deleterious(0.01) possibly_damaging(0.815) TCGA-2G-AAGJ-01 4 675675 675675 C T MYL5 Intron 0.28 TCGA-2G-AAGJ-01 6 136732800 136732800 G A MAP7 Missense_Mutation p.R90W 0.05 deleterious(0) probably_damaging(1) TCGA-2G-AAGJ-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.09 TCGA-2G-AAGJ-01 7 117832218 117832218 A C NAA38 3'UTR 0.23 TCGA-2G-AAGJ-01 7 139529133 139529133 C T TBXAS1 5'UTR 0.09 TCGA-2G-AAGJ-01 8 106813720 106813720 A T ZFPM2 Silent p.I470I 0.22 TCGA-2G-AAGJ-01 8 13357185 13357185 C - DLC1 Frame_Shift_Del p.Q133Rfs*8 0.12 TCGA-2G-AAGJ-01 X 125954748 125954748 G A CXorf64 Missense_Mutation p.D43N 0.32 tolerated(0.08) benign(0.07) TCGA-2G-AAGJ-01 X 43817791 43817791 G C NDP Missense_Mutation p.S34W 0.04 deleterious(0.01) benign(0.367) TCGA-2G-AAGJ-01 X 51637753 51637753 C A MAGED1 Missense_Mutation p.P26T 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-2G-AAGJ-01 X 79959062 79959062 G T BRWD3 Missense_Mutation p.P918T 0.28 tolerated(0.86) benign(0.003) TCGA-2G-AAGK-01 11 68455486 68455486 C T GAL Silent p.A47A 0.06 TCGA-2G-AAGK-01 12 123830101 123830101 G C SBNO1 Missense_Mutation p.T85S 0.26 deleterious_low_confidence(0.03) benign(0.156) TCGA-2G-AAGK-01 13 23906199 23906199 C G SACS Missense_Mutation p.G3939A 0.45 probably_damaging(0.996) TCGA-2G-AAGK-01 15 63414877 63414877 G A LACTB Missense_Mutation p.D134N 0.23 tolerated(0.24) benign(0.147) TCGA-2G-AAGK-01 16 89254650 89254650 G A CDH15 Missense_Mutation p.R312H 0.05 tolerated(0.09) benign(0.077) TCGA-2G-AAGK-01 1 150675839 150675839 G A HORMAD1 Missense_Mutation p.L327F 0.27 deleterious(0) probably_damaging(0.938) TCGA-2G-AAGK-01 20 50049133 50049133 G T NFATC2 Missense_Mutation p.F731L 0.15 tolerated(0.67) benign(0.002) TCGA-2G-AAGK-01 2 179499171 179499171 C A TTN Missense_Mutation p.D14113Y 0.20 TCGA-2G-AAGK-01 2 211018586 211018588 TTC - KANSL1L In_Frame_Del p.R240del 0.25 TCGA-2G-AAGM-01 11 57319786 57319786 G A UBE2L6 3'UTR 0.16 TCGA-2G-AAGM-01 14 38064138 38064138 C G FOXA1 Missense_Mutation p.D14H 0.11 deleterious(0) probably_damaging(0.957) TCGA-2G-AAGM-01 15 55669303 55669303 C A CCPG1 Missense_Mutation p.A100S 0.07 tolerated(0.85) benign(0.138) TCGA-2G-AAGM-01 15 64967246 64967247 - A ZNF609 Frame_Shift_Ins p.K735Efs*8 0.34 TCGA-2G-AAGM-01 17 25976035 25976035 G A LGALS9 3'UTR 0.35 TCGA-2G-AAGM-01 17 3779556 3779556 G - CAMKK1 Frame_Shift_Del p.E358Rfs*66 0.26 TCGA-2G-AAGM-01 17 74722562 74722562 C T JMJD6 5'UTR 0.17 TCGA-2G-AAGM-01 18 14542810 14542810 G A POTEC Silent p.S112S 0.08 TCGA-2G-AAGM-01 19 10488908 10488908 G A TYK2 Missense_Mutation p.H59Y 0.19 tolerated(0.08) benign(0.004) TCGA-2G-AAGM-01 19 10624996 10624996 C T S1PR5 Missense_Mutation p.G231E 0.51 tolerated(0.08) possibly_damaging(0.475) TCGA-2G-AAGM-01 19 9086806 9086808 CTT - MUC16 In_Frame_Del p.R1669del 0.17 TCGA-2G-AAGM-01 1 160151732 160151732 A G ATP1A4 Silent p.L960L 0.50 TCGA-2G-AAGM-01 1 204403713 204403713 G A PIK3C2B Silent p.S1180S 0.19 TCGA-2G-AAGM-01 2 231368922 231368922 A G SP100 Missense_Mutation p.E596G 0.05 tolerated(0.07) benign(0.011) TCGA-2G-AAGM-01 3 107097048 107097048 C T CCDC54 Missense_Mutation p.T205I 0.35 tolerated(0.08) benign(0.067) TCGA-2G-AAGM-01 3 170856034 170856034 C A TNIK Silent p.L518L 0.10 TCGA-2G-AAGM-01 4 125631497 125631497 G A ANKRD50 Missense_Mutation p.S57F 0.23 tolerated_low_confidence(0.05) benign(0.058) TCGA-2G-AAGM-01 4 30725848 30725848 A G PCDH7 Missense_Mutation p.K935R 0.35 tolerated(0.17) benign(0.014) TCGA-2G-AAGM-01 4 95496980 95496980 G C PDLIM5 Intron 0.26 TCGA-2G-AAGM-01 5 110097196 110097196 G A SLC25A46 Missense_Mutation p.S324N 0.27 tolerated(0.38) benign(0.007) TCGA-2G-AAGM-01 7 142570126 142570126 G A TRPV6 Missense_Mutation p.R632W 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-2G-AAGM-01 7 47343091 47343091 T A TNS3 Missense_Mutation p.S972C 0.12 tolerated(0.13) possibly_damaging(0.682) TCGA-2G-AAGM-01 7 6017231 6017231 G T PMS2 Silent p.A811A 0.37 TCGA-2G-AAGM-01 7 65705578 65705578 G T TPST1 Missense_Mutation p.D56Y 0.14 tolerated(0.14) benign(0.049) TCGA-2G-AAGM-01 7 70252379 70252379 T G AUTS2 Missense_Mutation p.D831E 0.17 tolerated(0.72) probably_damaging(0.911) TCGA-2G-AAGM-01 7 91691612 91691612 A - AKAP9 Frame_Shift_Del p.T1932Lfs*13 0.13 TCGA-2G-AAGM-01 7 98628279 98628280 AT - SMURF1 Frame_Shift_Del p.Y734* 0.22 TCGA-2G-AAGM-01 8 17885385 17885385 C T PCM1 3'UTR 0.06 TCGA-2G-AAGM-01 9 131022893 131022893 C T GOLGA2 Missense_Mutation p.A510T 0.22 tolerated(0.64) possibly_damaging(0.535) TCGA-2G-AAGM-01 X 139866052 139866052 G A CDR1 Silent p.S160S 0.25 TCGA-2G-AAGM-01 X 32456429 32456429 C T DMD Missense_Mutation p.G1334R 0.41 probably_damaging(0.996) TCGA-2G-AAGN-01 11 71850732 71850732 G T FOLR3 Missense_Mutation p.V241F 0.25 tolerated(0.09) benign(0.261) TCGA-2G-AAGN-01 11 77938073 77938073 G T GAB2 Silent p.T215T 0.17 TCGA-2G-AAGN-01 12 102406882 102406882 A G CCDC53 3'UTR 0.19 TCGA-2G-AAGN-01 17 62892947 62892947 G A LRRC37A3 Silent p.L143L 0.10 TCGA-2G-AAGN-01 17 80350394 80350396 GAA - OGFOD3 3'UTR 0.12 TCGA-2G-AAGN-01 8 41575645 41575645 G A ANK1 Silent p.A428A 0.10 TCGA-2G-AAGN-01 9 71629038 71629039 - GCGGCGGCG PRKACG 5'UTR 0.31 TCGA-2G-AAGO-01 11 61631410 61631410 G T FADS2 Intron 0.18 TCGA-2G-AAGO-01 11 92086050 92086050 C T FAT3 Missense_Mutation p.R258C 0.05 probably_damaging(0.999) TCGA-2G-AAGO-01 12 33529699 33529699 C T SYT10 3'UTR 0.18 TCGA-2G-AAGO-01 12 7016630 7016630 G A LRRC23 Intron 0.14 TCGA-2G-AAGO-01 16 2647685 2647685 G A PDPK1 Missense_Mutation p.G530R 0.27 tolerated(0.13) benign(0.185) TCGA-2G-AAGO-01 16 28925902 28925902 A C RABEP2 Silent p.R183R 0.15 TCGA-2G-AAGO-01 17 27401817 27401817 C T MYO18A Missense_Mutation p.E2046K 0.18 tolerated_low_confidence(0.07) benign(0.055) TCGA-2G-AAGO-01 17 73131958 73131958 A C HN1 3'UTR 0.33 TCGA-2G-AAGO-01 1 150526002 150526002 C A ADAMTSL4 Missense_Mutation p.P179T 0.23 tolerated(0.18) benign(0.055) TCGA-2G-AAGO-01 1 20234139 20234139 C T OTUD3 Missense_Mutation p.A366V 0.17 tolerated(1) benign(0.029) TCGA-2G-AAGO-01 1 244600986 244600986 T C ADSS Missense_Mutation p.N90D 0.22 tolerated(0.23) benign(0.018) TCGA-2G-AAGO-01 21 43974235 43974235 G A SLC37A1 Missense_Mutation p.E278K 0.08 tolerated(0.25) benign(0.108) TCGA-2G-AAGO-01 21 47831434 47831434 C A PCNT Missense_Mutation p.A1816D 0.11 possibly_damaging(0.908) TCGA-2G-AAGO-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.20 TCGA-2G-AAGO-01 22 30163557 30163557 C T UQCR10 Intron 0.25 TCGA-2G-AAGO-01 22 50688078 50688081 AAAG - HDAC10 Frame_Shift_Del p.F183Rfs*133 0.24 TCGA-2G-AAGO-01 2 112896249 112896250 CG - FBLN7 Frame_Shift_Del p.F10Pfs*125 0.15 TCGA-2G-AAGO-01 2 165353738 165353738 C A GRB14 Missense_Mutation p.S426I 0.25 deleterious(0.01) benign(0.14) TCGA-2G-AAGO-01 2 233194705 233194705 A G DIS3L2 Missense_Mutation p.N641S 0.32 tolerated(0.74) benign(0.042) TCGA-2G-AAGO-01 2 71783195 71783195 G T DYSF Missense_Mutation p.G737V 0.31 deleterious(0) benign(0.038) TCGA-2G-AAGO-01 3 49899544 49899552 TTCTTGCAG - CAMKV In_Frame_Del p.C52_K54del 0.29 TCGA-2G-AAGO-01 4 76882374 76882374 G A SDAD1 Silent p.H423H 0.30 TCGA-2G-AAGO-01 5 172659730 172659730 C T NKX2-5 Missense_Mutation p.A273T 0.36 tolerated(0.22) possibly_damaging(0.821) TCGA-2G-AAGO-01 5 176024694 176024694 A C GPRIN1 Missense_Mutation p.S714R 0.23 deleterious(0.01) benign(0.02) TCGA-2G-AAGO-01 5 176316733 176316733 C T HK3 Missense_Mutation p.D215N 0.13 tolerated(0.16) benign(0.117) TCGA-2G-AAGO-01 6 51512912 51512912 C T PKHD1 Missense_Mutation p.R3772Q 0.26 tolerated(0.65) benign(0.007) TCGA-2G-AAGO-01 6 79577463 79577463 G A IRAK1BP1 Missense_Mutation p.G57D 0.30 deleterious(0) probably_damaging(0.97) TCGA-2G-AAGO-01 7 99799272 99799272 T C GATS 3'UTR 0.38 TCGA-2G-AAGO-01 9 126144051 126144051 C T DENND1A Missense_Mutation p.G897D 0.16 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-2G-AAGO-01 9 84609192 84609192 G A SPATA31D1 Silent p.K1269K 0.33 TCGA-2G-AAGP-01 10 94449787 94449787 T G HHEX Missense_Mutation p.V15G 0.55 deleterious(0) benign(0.043) TCGA-2G-AAGP-01 11 26547227 26547227 G T ANO3 Splice_Site p.X246_splice 0.27 TCGA-2G-AAGP-01 12 43771347 43771347 A G ADAMTS20 Missense_Mutation p.F1606L 0.17 tolerated(0.69) benign(0.002) TCGA-2G-AAGP-01 12 6729744 6729744 G T LPAR5 Missense_Mutation p.T224K 0.09 tolerated(0.06) benign(0.189) TCGA-2G-AAGP-01 14 58832861 58832861 C G ARID4A Missense_Mutation p.P1146A 0.21 deleterious(0.03) possibly_damaging(0.765) TCGA-2G-AAGP-01 15 101555582 101555582 T A LRRK1 Silent p.G528G 0.24 TCGA-2G-AAGP-01 16 1748931 1748931 C G HN1L Missense_Mutation p.P169A 0.14 deleterious(0) probably_damaging(1) TCGA-2G-AAGP-01 17 31324871 31324871 C T SPACA3 3'UTR 0.06 TCGA-2G-AAGP-01 17 55123140 55123140 A C RNF126P1 RNA 0.12 TCGA-2G-AAGP-01 18 44584611 44584611 T C KATNAL2 Missense_Mutation p.M41T 0.16 tolerated(0.69) benign(0.001) TCGA-2G-AAGP-01 19 14273727 14273727 G A LPHN1 Missense_Mutation p.R301C 0.18 deleterious(0) probably_damaging(1) TCGA-2G-AAGP-01 19 1497565 1497565 C T REEP6 3'UTR 0.06 TCGA-2G-AAGP-01 19 16636107 16636107 C T CHERP Missense_Mutation p.E563K 0.17 tolerated_low_confidence(0.1) possibly_damaging(0.635) TCGA-2G-AAGP-01 19 2853172 2853172 G A ZNF555 Missense_Mutation p.C370Y 0.11 deleterious(0) probably_damaging(1) TCGA-2G-AAGP-01 19 40487306 40487306 A G PSMC4 3'UTR 0.17 TCGA-2G-AAGP-01 1 57111084 57111084 C A PRKAA2 Missense_Mutation p.D8E 0.08 tolerated(0.65) benign(0.001) TCGA-2G-AAGP-01 20 279150 279150 A G ZCCHC3 Missense_Mutation p.E308G 0.05 tolerated(0.12) benign(0.038) TCGA-2G-AAGP-01 20 35284911 35284911 G A NDRG3 Nonsense_Mutation p.Q295* 0.32 TCGA-2G-AAGP-01 20 45874864 45874864 G A ZMYND8 Silent p.G724G 0.16 TCGA-2G-AAGP-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.32 TCGA-2G-AAGP-01 22 29521294 29521294 A G KREMEN1 Missense_Mutation p.N174S 0.22 tolerated(0.13) benign(0.031) TCGA-2G-AAGP-01 2 167313390 167313390 T A SCN7A Missense_Mutation p.E427V 0.18 deleterious(0.01) benign(0.068) TCGA-2G-AAGP-01 2 217329366 217329366 C T SMARCAL1 Missense_Mutation p.A706V 0.14 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGP-01 3 142840095 142840095 T G CHST2 Missense_Mutation p.V146G 0.21 tolerated_low_confidence(0.42) unknown(0) TCGA-2G-AAGP-01 3 51430005 51430023 GGGCTAAGGTGGCCATGTC - RBM15B Frame_Shift_Del p.K394Efs*2 0.15 TCGA-2G-AAGP-01 5 180668627 180668627 C A GNB2L1 Silent p.T98T 0.12 TCGA-2G-AAGP-01 6 143091135 143091135 T C HIVEP2 Missense_Mutation p.S1581G 0.19 deleterious(0.04) probably_damaging(0.986) TCGA-2G-AAGP-01 6 28228082 28228082 T C NKAPL Silent p.Y311Y 0.10 TCGA-2G-AAGP-01 7 123672968 123672968 C G TMEM229A Missense_Mutation p.E30D 0.19 tolerated_low_confidence(0.22) benign(0.017) TCGA-2G-AAGP-01 7 28547354 28547354 G A CREB5 Missense_Mutation p.R97Q 0.16 tolerated(1) benign(0.046) TCGA-2G-AAGP-01 7 49815586 49815586 G C VWC2 Silent p.P185P 0.23 TCGA-2G-AAGP-01 7 4998791 4998791 G C MMD2 5'UTR 0.64 TCGA-2G-AAGP-01 8 124219616 124219616 C G FAM83A Silent p.S331S 0.06 TCGA-2G-AAGP-01 X 36091305 36091305 A C CHDC2 Silent p.S80S 0.49 TCGA-2G-AAGP-01 X 54472353 54472353 T A FGD1 3'UTR 0.30 TCGA-2G-AAGS-01 10 131676058 131676058 T G EBF3 Missense_Mutation p.N204H 0.08 deleterious(0.01) possibly_damaging(0.869) TCGA-2G-AAGS-01 10 75545505 75545505 G A ZSWIM8 5'UTR 0.37 TCGA-2G-AAGS-01 17 37604156 37604156 C G MED1 Missense_Mutation p.E9D 0.32 tolerated(0.36) possibly_damaging(0.636) TCGA-2G-AAGS-01 17 73824882 73824882 T G UNC13D Missense_Mutation p.Y1046S 0.17 deleterious(0.01) benign(0.067) TCGA-2G-AAGS-01 19 42796253 42796253 C G CIC Missense_Mutation p.P968A 0.28 probably_damaging(0.956) TCGA-2G-AAGS-01 19 56011494 56011494 T C SSC5D Missense_Mutation p.S673P 0.11 benign(0.038) TCGA-2G-AAGS-01 1 201437676 201437676 C - PHLDA3 Frame_Shift_Del p.G80Afs*21 0.23 TCGA-2G-AAGS-01 1 236389708 236389708 A C ERO1LB Missense_Mutation p.F305V 0.31 deleterious(0) probably_damaging(0.986) TCGA-2G-AAGS-01 2 48982761 48982761 A T LHCGR Missense_Mutation p.L17Q 0.13 deleterious_low_confidence(0.02) unknown(0) TCGA-2G-AAGS-01 3 185975651 185975651 T C DGKG Missense_Mutation p.D501G 0.36 deleterious(0) benign(0.232) TCGA-2G-AAGS-01 4 3319740 3319740 C T RGS12 Missense_Mutation p.P615S 0.23 tolerated(0.25) benign(0.031) TCGA-2G-AAGS-01 7 30058694 30058696 AGG - FKBP14 In_Frame_Del p.L132del 0.15 TCGA-2G-AAGS-01 8 121220569 121220569 T C COL14A1 Silent p.A430A 0.14 TCGA-2G-AAGT-01 11 105797664 105797664 G C GRIA4 Missense_Mutation p.R682T 0.30 deleterious(0) possibly_damaging(0.866) TCGA-2G-AAGT-01 11 35684815 35684815 C A TRIM44 Missense_Mutation p.F52L 0.33 deleterious(0.05) probably_damaging(0.978) TCGA-2G-AAGT-01 11 61111415 61111415 C A DAK Missense_Mutation p.P357H 0.48 deleterious(0.05) benign(0.401) TCGA-2G-AAGT-01 11 6816325 6816325 G A OR6A2 Silent p.F205F 0.52 TCGA-2G-AAGT-01 12 120634676 120634690 GTGGCAGCAGCCACA - RPLP0 In_Frame_Del p.V281_T285del 0.24 TCGA-2G-AAGT-01 14 101195284 101195284 G A DLK1 Missense_Mutation p.G48D 0.12 deleterious(0) probably_damaging(1) TCGA-2G-AAGT-01 14 21798426 21798426 T C RPGRIP1 Missense_Mutation p.W1040R 0.45 deleterious(0.02) possibly_damaging(0.59) TCGA-2G-AAGT-01 15 41108371 41108371 C T PPP1R14D Nonsense_Mutation p.W151* 0.39 TCGA-2G-AAGT-01 19 51919248 51919248 G A SIGLEC10 Silent p.L310L 0.14 TCGA-2G-AAGT-01 1 150680868 150680868 G A HORMAD1 Silent p.N137N 0.41 TCGA-2G-AAGT-01 1 166904678 166904678 G A ILDR2 Missense_Mutation p.P247L 0.27 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGT-01 1 203055161 203055161 C T MYOG 5'UTR 0.08 TCGA-2G-AAGT-01 1 222849452 222849454 GTA - AIDA In_Frame_Del p.T190del 0.35 TCGA-2G-AAGT-01 20 13982939 13982939 T G MACROD2 Missense_Mutation p.L18V 0.20 deleterious(0.01) possibly_damaging(0.904) TCGA-2G-AAGT-01 20 60892038 60892038 G A LAMA5 Missense_Mutation p.A2518V 0.15 possibly_damaging(0.474) TCGA-2G-AAGT-01 22 32628901 32628901 G A SLC5A4 Missense_Mutation p.R336C 0.35 deleterious(0) probably_damaging(0.998) TCGA-2G-AAGT-01 2 179355457 179355467 AATGCAGCTGA - PLEKHA3 Frame_Shift_Del p.N77Kfs*17 0.36 TCGA-2G-AAGT-01 2 220416900 220416900 C T OBSL1 Missense_Mutation p.E1783K 0.41 tolerated(0.25) possibly_damaging(0.901) TCGA-2G-AAGT-01 2 24080341 24080341 A C ATAD2B Missense_Mutation p.F504L 0.30 deleterious(0) probably_damaging(0.912) TCGA-2G-AAGT-01 2 85866488 85866488 G T USP39 Missense_Mutation p.A420S 0.06 tolerated(0.6) benign(0.042) TCGA-2G-AAGT-01 3 46486928 46486928 C T LTF Splice_Site p.X453_splice 0.06 TCGA-2G-AAGT-01 6 44218796 44218798 AGA - HSP90AB1 In_Frame_Del p.E324del 0.42 TCGA-2G-AAGT-01 8 145013733 145013733 C G PLEC Intron 0.43 TCGA-2G-AAGT-01 X 30870899 30870899 G A TAB3 Missense_Mutation p.P569L 0.15 deleterious(0) probably_damaging(0.999) TCGA-2G-AAGV-01 15 100882053 100882053 G C ADAMTS17 Missense_Mutation p.L18V 0.07 deleterious_low_confidence(0) benign(0.001) TCGA-2G-AAGV-01 16 422631 422631 C T TMEM8A Missense_Mutation p.V667M 0.22 deleterious(0.05) benign(0.378) TCGA-2G-AAGV-01 17 3937397 3937397 G T ZZEF1 Missense_Mutation p.L2166M 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-2G-AAGV-01 2 130910391 130910391 G A SMPD4 Missense_Mutation p.L780F 0.33 tolerated(0.19) benign(0.07) TCGA-2G-AAGV-01 6 158517208 158517208 G A SYNJ2 Missense_Mutation p.D1435N 0.10 tolerated_low_confidence(0.36) benign(0.004) TCGA-2G-AAGV-01 8 145627045 145627045 C T CPSF1 Missense_Mutation p.S56N 0.23 tolerated(0.44) benign(0.001) TCGA-2G-AAGV-01 8 3216723 3216723 G A CSMD1 Silent p.C1085C 0.28 TCGA-2G-AAGV-01 8 67342701 67342701 A G RRS1 3'UTR 0.20 TCGA-2G-AAGW-01 10 48413904 48413904 C T GDF2 Missense_Mutation p.G322R 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-2G-AAGW-01 11 117774337 117774337 G T TMPRSS13 Intron 0.55 TCGA-2G-AAGW-01 12 120427911 120427911 C T CCDC64 Missense_Mutation p.P80L 0.31 tolerated_low_confidence(0.09) benign(0) TCGA-2G-AAGW-01 12 32138197 32138197 T C KIAA1551 Silent p.S1436S 0.41 TCGA-2G-AAGW-01 12 49231066 49231066 G A DDX23 Silent p.P288P 0.30 TCGA-2G-AAGW-01 16 68397765 68397767 GTC - SMPD3 In_Frame_Del p.D520del 0.31 TCGA-2G-AAGW-01 17 33591734 33591734 A T SLFN5 Silent p.T557T 0.13 TCGA-2G-AAGW-01 17 40323897 40323897 G A KCNH4 Silent p.V368V 0.31 TCGA-2G-AAGW-01 18 11824997 11824997 G T GNAL Silent p.L235L 0.05 TCGA-2G-AAGW-01 18 31324017 31324017 C T ASXL3 Missense_Mutation p.A1402V 0.43 benign(0.003) TCGA-2G-AAGW-01 18 72999575 72999575 C T TSHZ1 Missense_Mutation p.P693L 0.20 deleterious(0) possibly_damaging(0.627) TCGA-2G-AAGW-01 19 15299844 15299844 G C NOTCH3 Missense_Mutation p.T445R 0.18 deleterious(0.01) probably_damaging(1) TCGA-2G-AAGW-01 19 797478 797478 G T PTBP1 5'UTR 0.12 TCGA-2G-AAGW-01 1 1267021 1267023 CTC - TAS1R3 In_Frame_Del p.S67del 0.40 TCGA-2G-AAGW-01 1 155948257 155948257 C A ARHGEF2 5'UTR 0.19 TCGA-2G-AAGW-01 1 174417851 174417851 C T GPR52 Missense_Mutation p.A201V 0.47 tolerated(1) benign(0.098) TCGA-2G-AAGW-01 20 5923280 5923280 T C TRMT6 Missense_Mutation p.M274V 0.62 tolerated(0.29) benign(0.002) TCGA-2G-AAGW-01 2 21239410 21239410 C G APOB Missense_Mutation p.R1078T 0.14 probably_damaging(0.991) TCGA-2G-AAGW-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.07 TCGA-2G-AAGW-01 2 37599594 37599594 C A QPCT Missense_Mutation p.H307N 0.14 deleterious(0) probably_damaging(0.994) TCGA-2G-AAGW-01 2 97217882 97217882 G T ARID5A Silent p.L539L 0.21 TCGA-2G-AAGW-01 3 127393212 127393212 C T ABTB1 Intron 0.54 TCGA-2G-AAGW-01 3 38591720 38591720 A G SCN5A 3'UTR 0.22 TCGA-2G-AAGW-01 4 169589444 169589444 G C PALLD Missense_Mutation p.D338H 0.25 deleterious(0) probably_damaging(1) TCGA-2G-AAGW-01 4 66201775 66201775 C A EPHA5 Missense_Mutation p.Q909H 0.07 deleterious(0.02) benign(0.002) TCGA-2G-AAGW-01 5 126141339 126141339 G T LMNB1 Missense_Mutation p.C198F 0.04 deleterious(0.03) possibly_damaging(0.688) TCGA-2G-AAGW-01 6 46623642 46623642 C A SLC25A27 Silent p.R57R 0.21 TCGA-2G-AAGW-01 6 56035583 56035583 A G COL21A1 Missense_Mutation p.L297S 0.09 deleterious(0) probably_damaging(0.994) TCGA-2G-AAGW-01 7 151874328 151874328 T - KMT2C Frame_Shift_Del p.N2737Ifs*13 0.20 TCGA-2G-AAGW-01 7 44098556 44098556 C A DBNL Missense_Mutation p.T279N 0.20 tolerated(0.14) benign(0.137) TCGA-2G-AAGW-01 8 3855559 3855559 G C CSMD1 Nonsense_Mutation p.Y228* 0.11 TCGA-2G-AAGW-01 8 70533339 70533339 C T SULF1 Missense_Mutation p.L483F 0.30 tolerated(0.74) benign(0.005) TCGA-2G-AAGW-01 9 139927646 139927646 C A C9orf139 Missense_Mutation p.A44E 0.30 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-2G-AAGW-01 9 33953311 33953311 G A UBAP2 Missense_Mutation p.A343V 0.17 deleterious(0.05) benign(0.099) TCGA-2G-AAGX-01 10 60155014 60155014 A C TFAM 3'UTR 0.20 TCGA-2G-AAGX-01 14 23530737 23530737 G T ACIN1 Missense_Mutation p.P1123H 0.14 probably_damaging(0.986) TCGA-2G-AAGX-01 15 43712824 43712833 GTCTGGTGGA - TP53BP1 Frame_Shift_Del p.S1451Efs*29 0.28 TCGA-2G-AAGX-01 17 14139304 14139304 T G CDRT15 Silent p.R146R 0.16 TCGA-2G-AAGX-01 19 1615576 1615576 C T TCF3 Intron 0.29 TCGA-2G-AAGX-01 1 244601040 244601040 C T ADSS Missense_Mutation p.V72M 0.39 deleterious(0.01) probably_damaging(0.986) TCGA-2G-AAGX-01 1 26162011 26162013 AAG - AUNIP In_Frame_Del p.S182del 0.24 TCGA-2G-AAGX-01 1 37325605 37325605 A G GRIK3 Missense_Mutation p.L267S 0.35 deleterious(0.03) possibly_damaging(0.599) TCGA-2G-AAGX-01 20 485847 485847 C T CSNK2A1 Missense_Mutation p.R43Q 0.44 deleterious(0.04) possibly_damaging(0.85) TCGA-2G-AAGX-01 22 42539509 42539509 G A NDUFA6-AS1 3'Flank 0.14 TCGA-2G-AAGX-01 8 22424177 22424177 C T SORBS3 Missense_Mutation p.P365L 0.25 tolerated(0.09) benign(0.033) TCGA-2G-AAGX-01 9 104171915 104171915 C G ZNF189 Missense_Mutation p.T622R 0.40 deleterious(0) benign(0.137) TCGA-2G-AAGY-01 12 122231059 122231059 G T RHOF Silent p.A75A 0.05 TCGA-2G-AAGY-01 12 54677642 54677642 C T HNRNPA1 Silent p.Y318Y 0.16 TCGA-2G-AAGY-01 14 94394839 94394839 A G FAM181A Missense_Mutation p.R132G 0.06 deleterious(0) probably_damaging(0.983) TCGA-2G-AAGY-01 16 70913326 70913326 C G HYDIN Silent p.V3477V 0.34 TCGA-2G-AAGY-01 19 46005579 46005579 A C PPM1N 3'Flank 0.18 TCGA-2G-AAGY-01 1 108766085 108766085 C A NBPF4 3'UTR 0.44 TCGA-2G-AAGY-01 1 145075927 145075927 C A PDE4DIP 5'UTR 0.31 TCGA-2G-AAGY-01 1 169581527 169581527 C T SELP Missense_Mutation p.A297T 0.17 tolerated(0.42) benign(0.012) TCGA-2G-AAGY-01 1 179820097 179820097 C T TOR1AIP2 Missense_Mutation p.G146R 0.21 tolerated(1) benign(0.005) TCGA-2G-AAGY-01 1 206224555 206224555 G A AVPR1B Missense_Mutation p.G39R 0.24 deleterious(0) possibly_damaging(0.696) TCGA-2G-AAGY-01 1 207110937 207110937 A C PIGR Missense_Mutation p.V183G 0.14 deleterious(0) possibly_damaging(0.834) TCGA-2G-AAGY-01 1 33116847 33116847 C T RBBP4 5'UTR 0.20 TCGA-2G-AAGY-01 2 179473629 179473629 G A TTN Missense_Mutation p.P17370L 0.05 TCGA-2G-AAGY-01 2 26409072 26409072 C T GAREML Silent p.C481C 0.07 TCGA-2G-AAGY-01 2 85769043 85769043 A G MAT2A Missense_Mutation p.E166G 0.26 deleterious(0) possibly_damaging(0.707) TCGA-2G-AAGY-01 3 192445083 192445083 C T RNU1-20P 3'Flank 0.26 TCGA-2G-AAGY-01 6 33041356 33041356 G TA HLA-DPA1 5'UTR 0.17 TCGA-2G-AAGY-01 7 140373547 140373548 - ACCTCAGGCCCA ADCK2 In_Frame_Ins p.S141_T144dup 0.08 TCGA-2G-AAGY-01 9 139370740 139370740 G T SEC16A Missense_Mutation p.T443K 0.59 tolerated(0.62) benign(0.44) TCGA-2G-AAGZ-01 13 52741936 52741936 C T MRPS31P5 RNA 0.12 TCGA-2G-AAGZ-01 14 73577750 73577750 C G RBM25 Missense_Mutation p.P635R 0.06 possibly_damaging(0.804) TCGA-2G-AAGZ-01 14 86092091 86092091 G A FLRT2 3'UTR 0.06 TCGA-2G-AAGZ-01 16 18844390 18844390 G A SMG1 Silent p.D2888D 0.04 TCGA-2G-AAGZ-01 16 30734457 30734457 C G SRCAP Missense_Mutation p.P1356A 0.07 possibly_damaging(0.539) TCGA-2G-AAGZ-01 17 39578411 39578411 G A KRT37 Silent p.S310S 0.08 TCGA-2G-AAGZ-01 17 41108298 41108298 T G AARSD1 Missense_Mutation p.I196L 0.05 deleterious(0.01) benign(0.049) TCGA-2G-AAGZ-01 17 71204453 71204453 G T COG1 Missense_Mutation p.V936F 0.12 deleterious(0.02) possibly_damaging(0.498) TCGA-2G-AAGZ-01 19 49973911 49973911 T C ALDH16A1 3'UTR 0.29 TCGA-2G-AAGZ-01 1 155258014 155258014 T C HCN3 Silent p.G695G 0.10 TCGA-2G-AAGZ-01 1 155733205 155733205 C A GON4L Missense_Mutation p.D1542Y 0.05 deleterious(0) probably_damaging(0.979) TCGA-2G-AAGZ-01 1 36775175 36775175 G A SH3D21 Silent p.V251V 0.13 TCGA-2G-AAGZ-01 1 92979068 92979093 ATATATATATATATATATATATATAT - EVI5 3'UTR 0.32 TCGA-2G-AAGZ-01 22 26936904 26936906 CTC - TPST2 In_Frame_Del p.E231del 0.09 TCGA-2G-AAGZ-01 22 41573417 41573417 C T EP300 Missense_Mutation p.A1901V 0.10 probably_damaging(0.935) TCGA-2G-AAGZ-01 2 33012134 33012134 G A TTC27 Missense_Mutation p.S639N 0.05 deleterious(0.03) probably_damaging(0.934) TCGA-2G-AAGZ-01 2 80772149 80772149 G T CTNNA2 Missense_Mutation p.V445L 0.10 deleterious(0.01) benign(0.196) TCGA-2G-AAGZ-01 4 52861139 52861139 G A LRRC66 Silent p.N683N 0.09 TCGA-2G-AAGZ-01 5 95297590 95297590 A C ELL2 5'UTR 0.36 TCGA-2G-AAGZ-01 7 126086148 126086148 C G GRM8 Intron 0.06 TCGA-2G-AAGZ-01 7 81693631 81693631 A T CACNA2D1 Silent p.I256I 0.04 TCGA-2G-AAGZ-01 9 33797853 33797855 ACA - PRSS3 In_Frame_Del p.N134del 0.10 TCGA-2G-AAGZ-01 X 65238810 65238810 C G VSIG4 3'Flank 0.17 TCGA-2G-AAH0-01 10 127412441 127412441 G T EDRF1 Missense_Mutation p.R149L 0.07 deleterious(0) probably_damaging(1) TCGA-2G-AAH0-01 10 55583070 55583070 G A PCDH15 Silent p.V1474V 0.22 TCGA-2G-AAH0-01 11 100211902 100211902 C A CNTN5 Missense_Mutation p.P999T 0.08 tolerated(0.42) possibly_damaging(0.527) TCGA-2G-AAH0-01 11 57254608 57254608 A G SLC43A1 Missense_Mutation p.F498S 0.10 deleterious(0) probably_damaging(0.984) TCGA-2G-AAH0-01 15 99740253 99740253 T C TTC23 Silent p.Q210Q 0.25 TCGA-2G-AAH0-01 19 4546434 4546434 C T SEMA6B Missense_Mutation p.G550D 0.05 deleterious(0.01) possibly_damaging(0.752) TCGA-2G-AAH0-01 1 205084037 205084037 T C RBBP5 Missense_Mutation p.N33S 0.14 deleterious(0) probably_damaging(0.992) TCGA-2G-AAH0-01 20 21687362 21687362 C A PAX1 Silent p.I191I 0.23 TCGA-2G-AAH0-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.07 TCGA-2G-AAH0-01 4 100529976 100529976 G C MTTP Missense_Mutation p.K537N 0.10 deleterious(0) benign(0.223) TCGA-2G-AAH0-01 5 149677844 149677844 G A ARSI Missense_Mutation p.R215C 0.08 deleterious(0) probably_damaging(0.993) TCGA-2G-AAH0-01 5 95067647 95067647 G A RHOBTB3 Silent p.L29L 0.08 TCGA-2G-AAH0-01 7 87004971 87004971 A G CROT Missense_Mutation p.K255R 0.06 tolerated(0.58) benign(0.004) TCGA-2G-AAH0-01 8 26149107 26149107 C T PPP2R2A 5'Flank 0.09 TCGA-2G-AAH0-01 9 86322615 86322615 C T UBQLN1 5'UTR 0.08 TCGA-2G-AAH2-01 15 40949336 40949336 A T CASC5 Missense_Mutation p.H2220L 0.22 deleterious(0.03) benign(0.224) TCGA-2G-AAH2-01 15 43641357 43641357 A G ADAL Intron 0.27 TCGA-2G-AAH2-01 17 15973655 15973655 G A NCOR1 Missense_Mutation p.S1446F 0.33 benign(0.309) TCGA-2G-AAH2-01 17 37571338 37571338 G A MED1 Silent p.Y480Y 0.29 TCGA-2G-AAH2-01 1 154321404 154321404 G T ATP8B2 Missense_Mutation p.G1161V 0.36 deleterious(0) probably_damaging(1) TCGA-2G-AAH2-01 22 46749663 46749663 G C TRMU Splice_Site p.X258_splice 0.28 TCGA-2G-AAH2-01 2 189868987 189868987 C T COL3A1 Missense_Mutation p.A943V 0.36 benign(0.275) TCGA-2G-AAH2-01 5 7851032 7851032 G T C5orf49 Missense_Mutation p.R35S 0.11 deleterious(0) possibly_damaging(0.834) TCGA-2G-AAH2-01 6 132945356 132945356 T - TAAR2 Frame_Shift_Del p.K20Rfs*45 0.23 TCGA-2G-AAH2-01 7 154738434 154738434 G A PAXIP1 Silent p.S1004S 0.23 TCGA-2G-AAH2-01 9 131343226 131343226 C T SPTAN1 Missense_Mutation p.A450V 0.04 tolerated(0.12) benign(0.007) TCGA-2G-AAH2-01 X 153524075 153524075 T G TKTL1 5'UTR 0.58 TCGA-2G-AAH3-01 10 49939481 49939481 G T WDFY4 Missense_Mutation p.A486S 0.06 deleterious(0) probably_damaging(0.994) TCGA-2G-AAH3-01 10 51585536 51585536 G T NCOA4 Missense_Mutation p.K561N 0.07 tolerated(0.59) benign(0.01) TCGA-2G-AAH3-01 10 68686864 68686864 T A LRRTM3 Missense_Mutation p.L64I 0.17 tolerated(0.32) benign(0.015) TCGA-2G-AAH3-01 13 26436476 26436476 G A ATP8A2 Nonsense_Mutation p.W1038* 0.39 TCGA-2G-AAH3-01 14 24608338 24608338 G T EMC9 Missense_Mutation p.Q170K 0.18 tolerated(0.26) benign(0.048) TCGA-2G-AAH3-01 14 54416555 54416555 C T BMP4 3'UTR 0.25 TCGA-2G-AAH3-01 14 54884583 54884583 C A CDKN3 Missense_Mutation p.L156I 0.06 deleterious(0.01) benign(0.412) TCGA-2G-AAH3-01 15 40751683 40751683 G T BAHD1 Missense_Mutation p.Q340H 0.21 deleterious(0) probably_damaging(0.993) TCGA-2G-AAH3-01 15 40751684 40751684 G T BAHD1 Nonsense_Mutation p.E341* 0.21 TCGA-2G-AAH3-01 15 75656927 75656927 C T MAN2C1 Missense_Mutation p.E168K 0.16 tolerated(0.48) benign(0.008) TCGA-2G-AAH3-01 16 23540942 23540942 G A EARS2 Silent p.C411C 0.27 TCGA-2G-AAH3-01 16 4559436 4559436 C T HMOX2 Silent p.A240A 0.04 TCGA-2G-AAH3-01 16 66600066 66600066 G T CKLF 3'Flank 0.06 TCGA-2G-AAH3-01 18 30913247 30913247 G C CCDC178 Missense_Mutation p.A257G 0.29 tolerated(0.27) benign(0.015) TCGA-2G-AAH3-01 19 18981350 18981350 G C GDF1 5'UTR 0.06 TCGA-2G-AAH3-01 19 8467601 8467601 T C RAB11B Intron 0.71 TCGA-2G-AAH3-01 1 101186170 101186170 A T VCAM1 Missense_Mutation p.N68I 0.25 deleterious(0.01) probably_damaging(0.942) TCGA-2G-AAH3-01 1 11849574 11849574 C G MTHFR 3'UTR 0.22 TCGA-2G-AAH3-01 1 153233515 153233515 C T LOR Silent p.G30G 0.05 TCGA-2G-AAH3-01 1 46073158 46073158 C T NASP Missense_Mutation p.A192V 0.24 tolerated_low_confidence(0.08) benign(0.004) TCGA-2G-AAH3-01 1 75038768 75038768 G C C1orf173 Missense_Mutation p.P876A 0.19 tolerated(0.17) benign(0.206) TCGA-2G-AAH3-01 1 93646321 93646321 G A CCDC18 Silent p.E14E 0.33 TCGA-2G-AAH3-01 20 2843984 2843984 C G VPS16 Nonsense_Mutation p.Y472* 0.23 TCGA-2G-AAH3-01 2 167055703 167055703 C T SCN9A Missense_Mutation p.A1805T 0.04 deleterious(0) possibly_damaging(0.781) TCGA-2G-AAH3-01 3 10048872 10048872 C A AC022007.5 RNA 0.20 TCGA-2G-AAH3-01 3 10183453 10183453 A T VHL 5'UTR 0.24 TCGA-2G-AAH3-01 3 157823772 157823772 C G SHOX2 Missense_Mutation p.Q14H 0.05 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-2G-AAH3-01 4 151837605 151837605 G A LRBA Missense_Mutation p.S281L 0.06 deleterious(0.02) probably_damaging(0.997) TCGA-2G-AAH3-01 4 186231964 186231964 C A SNX25 Missense_Mutation p.S282R 0.25 deleterious(0.02) benign(0.128) TCGA-2G-AAH3-01 4 55602664 55602664 G C KIT Missense_Mutation p.A829P 0.30 deleterious(0) possibly_damaging(0.855) TCGA-2G-AAH3-01 5 174156363 174156363 G C MSX2 Missense_Mutation p.R194T 0.14 deleterious(0) probably_damaging(0.997) TCGA-2G-AAH3-01 5 71489724 71489724 C G MAP1B Missense_Mutation p.A181G 0.23 unknown(0) TCGA-2G-AAH3-01 6 138539259 138539259 C A PBOV1 Missense_Mutation p.G92C 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-2G-AAH3-01 6 40360629 40360629 C A LRFN2 Missense_Mutation p.A475S 0.25 tolerated(0.97) benign(0.041) TCGA-2G-AAH3-01 7 77755017 77755017 C G MAGI2 Missense_Mutation p.R1187S 0.09 deleterious(0) probably_damaging(0.997) TCGA-2G-AAH3-01 7 93539966 93539966 A G GNGT1 Intron 0.06 TCGA-2G-AAH3-01 7 98792933 98792933 G A KPNA7 Missense_Mutation p.P105S 0.12 deleterious(0.02) probably_damaging(0.97) TCGA-2G-AAH3-01 8 144810755 144810755 G T FAM83H Silent p.A292A 0.08 TCGA-2G-AAH3-01 8 95262445 95262445 C T GEM 3'UTR 0.20 TCGA-2G-AAH3-01 X 123556153 123556153 G A TENM1 Silent p.C1480C 0.09 TCGA-2G-AAH3-01 X 142967560 142967560 G T UBE2NL Missense_Mutation p.D120Y 0.45 deleterious(0) probably_damaging(0.989) TCGA-2G-AAH3-01 X 41205590 41205590 G C DDX3X Missense_Mutation p.R475P 0.08 deleterious(0) probably_damaging(0.989) TCGA-2G-AAH4-01 10 43312871 43312871 G C BMS1 Missense_Mutation p.D837H 0.38 deleterious(0) probably_damaging(0.989) TCGA-2G-AAH4-01 11 107521086 107521086 G T ELMOD1 Missense_Mutation p.A194S 0.05 tolerated(0.54) benign(0.004) TCGA-2G-AAH4-01 11 126126463 126126463 G C FAM118B Missense_Mutation p.R233T 0.36 tolerated(0.36) benign(0.243) TCGA-2G-AAH4-01 11 46717282 46717282 C G ARHGAP1 Missense_Mutation p.E53Q 0.33 tolerated(0.29) benign(0.06) TCGA-2G-AAH4-01 11 78380844 78380844 C T TENM4 Silent p.K2182K 0.36 TCGA-2G-AAH4-01 16 89347466 89347466 C T ANKRD11 Silent p.S1828S 0.44 TCGA-2G-AAH4-01 17 15603363 15603363 T C ZNF286A 5'UTR 0.17 TCGA-2G-AAH4-01 17 65989082 65989082 C G C17orf58 Intron 0.27 TCGA-2G-AAH4-01 17 76354724 76354724 C T SOCS3 Silent p.P151P 0.25 TCGA-2G-AAH4-01 19 2853972 2853972 C T ZNF555 3'UTR 0.28 TCGA-2G-AAH4-01 19 38159840 38159840 T C ZNF781 3'UTR 0.44 TCGA-2G-AAH4-01 19 54304502 54304502 G T NLRP12 Missense_Mutation p.T912K 0.08 tolerated(0.82) benign(0.002) TCGA-2G-AAH4-01 1 150485951 150485951 C T ECM1 3'UTR 0.20 TCGA-2G-AAH4-01 21 15352291 15352291 A C ANKRD20A11P 5'Flank 0.24 TCGA-2G-AAH4-01 22 46658471 46658471 G T PKDREJ Missense_Mutation p.P250Q 0.05 tolerated(0.19) possibly_damaging(0.745) TCGA-2G-AAH4-01 3 96706454 96706454 C T EPHA6 Missense_Mutation p.T244I 0.24 deleterious(0) probably_damaging(0.999) TCGA-2G-AAH4-01 4 188924033 188924033 G A ZFP42 Silent p.G24G 0.46 TCGA-2G-AAH4-01 6 56422278 56422278 T C DST Missense_Mutation p.R2204G 0.30 probably_damaging(0.999) TCGA-2G-AAH4-01 6 91254350 91254350 G T MAP3K7 Silent p.A404A 0.32 TCGA-2G-AAH4-01 7 150094605 150094605 T C ZNF775 Missense_Mutation p.F346L 0.38 deleterious(0) probably_damaging(0.992) TCGA-2G-AAH4-01 7 152012230 152012230 G A KMT2C Nonsense_Mutation p.Q195* 0.25 TCGA-2G-AAH4-01 9 140002112 140002112 C T MAN1B1 Missense_Mutation p.R632W 0.08 deleterious(0) probably_damaging(0.996) TCGA-2G-AAH4-01 9 19371912 19371913 AA - DENND4C Intron 0.23 TCGA-2G-AAH4-01 X 50053935 50053935 T C CCNB3 Silent p.N922N 0.05 TCGA-2G-AAH8-01 11 1269803 1269803 C G MUC5B Missense_Mutation p.T3898R 0.23 unknown(0) TCGA-2G-AAH8-01 11 70224251 70224251 C G PPFIA1 Missense_Mutation p.T1167S 0.42 tolerated(0.44) benign(0.001) TCGA-2G-AAH8-01 11 77451960 77451960 C G RSF1 Missense_Mutation p.D132H 0.33 deleterious(0) probably_damaging(0.998) TCGA-2G-AAH8-01 12 131357394 131357394 G A RAN Missense_Mutation p.G17D 0.18 deleterious(0) probably_damaging(0.999) TCGA-2G-AAH8-01 12 25380276 25380276 T A KRAS Missense_Mutation p.Q61L 0.12 deleterious(0) probably_damaging(0.94) TCGA-2G-AAH8-01 12 2943815 2943815 T A NRIP2 Missense_Mutation p.K112M 0.08 deleterious(0) probably_damaging(1) TCGA-2G-AAH8-01 12 57926527 57926527 C T DCTN2 Missense_Mutation p.A286T 0.19 tolerated(0.07) probably_damaging(0.977) TCGA-2G-AAH8-01 16 18812827 18812827 C T ARL6IP1 5'UTR 0.06 TCGA-2G-AAH8-01 1 152280480 152280480 G T FLG Missense_Mutation p.H2294Q 0.25 benign(0.227) TCGA-2G-AAH8-01 22 39885487 39885489 GAG - MGAT3 3'UTR 0.25 TCGA-2G-AAH8-01 2 26587175 26587175 T G EPT1 Missense_Mutation p.S21R 0.39 deleterious(0.01) benign(0.025) TCGA-2G-AAH8-01 3 138374244 138374244 T A PIK3CB Missense_Mutation p.D1067V 0.26 deleterious(0) probably_damaging(0.992) TCGA-2G-AAH8-01 3 185407330 185407330 A T IGF2BP2 Missense_Mutation p.S164T 0.27 tolerated(0.49) benign(0.002) TCGA-2G-AAH8-01 3 196296078 196296078 A G FBXO45 Missense_Mutation p.N75D 0.34 tolerated(0.42) benign(0.392) TCGA-2G-AAH8-01 3 49395636 49395636 C A GPX1 Missense_Mutation p.G26C 0.32 deleterious(0) possibly_damaging(0.901) TCGA-2G-AAH8-01 4 146059616 146059616 G T OTUD4 Missense_Mutation p.Q706K 0.34 tolerated(0.18) benign(0.234) TCGA-2G-AAH8-01 5 126171941 126171941 C A LMNB1 Missense_Mutation p.S582R 0.22 deleterious(0.02) benign(0.23) TCGA-2G-AAH8-01 5 126755897 126755897 C T MEGF10 Nonsense_Mutation p.Q530* 0.22 TCGA-2G-AAH8-01 6 121526289 121526289 T G TBC1D32 Silent p.I834I 0.18 TCGA-2G-AAH8-01 6 83949272 83949272 G C ME1 Missense_Mutation p.Q300E 0.12 deleterious(0.03) possibly_damaging(0.853) TCGA-2G-AAH8-01 6 90467976 90467976 G C MDN1 Missense_Mutation p.N900K 0.21 probably_damaging(0.999) TCGA-2G-AAH8-01 7 142961249 142961249 T A GSTK1 Missense_Mutation p.M48K 0.11 deleterious(0) benign(0.359) TCGA-2G-AAH8-01 7 151716815 151716815 G C GALNTL5 Missense_Mutation p.G421R 0.17 deleterious(0.02) probably_damaging(0.983) TCGA-2G-AAH8-01 7 2580652 2580652 G C BRAT1 Silent p.V452V 0.35 TCGA-2G-AAH8-01 7 73466166 73466166 G T ELN Missense_Mutation p.A296S 0.18 unknown(0) TCGA-2G-AAH8-01 8 124383988 124383988 T G ATAD2 Missense_Mutation p.E153A 0.21 tolerated(0.07) benign(0.024) TCGA-2G-AAH8-01 8 59060046 59060046 G A FAM110B 3'UTR 0.15 TCGA-2G-AAHA-01 10 71243444 71243444 C T TSPAN15 Intron 0.21 TCGA-2G-AAHA-01 11 116692311 116692311 G A APOA4 Missense_Mutation p.R155C 0.26 deleterious(0.01) possibly_damaging(0.886) TCGA-2G-AAHA-01 12 12232368 12232368 C T BCL2L14 Silent p.F43F 0.18 TCGA-2G-AAHA-01 12 25398284 25398284 C G KRAS Missense_Mutation p.G12A 0.17 deleterious(0.02) possibly_damaging(0.773) TCGA-2G-AAHA-01 12 32134098 32134098 C T KIAA1551 Missense_Mutation p.P70L 0.16 tolerated(0.06) benign(0.066) TCGA-2G-AAHA-01 13 111214064 111214064 C T RAB20 5'UTR 0.16 TCGA-2G-AAHA-01 14 39651005 39651005 G T PNN Missense_Mutation p.G698C 0.05 deleterious_low_confidence(0) unknown(0) TCGA-2G-AAHA-01 15 62362625 62362625 T C C2CD4A 3'UTR 0.15 TCGA-2G-AAHA-01 15 75143705 75143705 T G SCAMP2 Missense_Mutation p.Y154S 0.09 deleterious(0) probably_damaging(0.998) TCGA-2G-AAHA-01 16 603028 603063 CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC - CAPN15 Splice_Site p.X1028_splice 0.38 TCGA-2G-AAHA-01 17 12656145 12656145 G A MYOCD Missense_Mutation p.D514N 0.18 deleterious(0) probably_damaging(0.983) TCGA-2G-AAHA-01 17 31094740 31094740 C T MYO1D Missense_Mutation p.V249I 0.09 deleterious(0.03) benign(0.063) TCGA-2G-AAHA-01 19 40901937 40901937 C A PRX Silent p.V774V 0.36 TCGA-2G-AAHA-01 19 43965443 43965443 A G LYPD3 3'UTR 0.19 TCGA-2G-AAHA-01 19 51293729 51293729 C G ACPT Missense_Mutation p.L20V 0.12 tolerated(0.27) benign(0.001) TCGA-2G-AAHA-01 1 150238547 150238547 T C APH1A Missense_Mutation p.I261V 0.30 tolerated_low_confidence(1) benign(0) TCGA-2G-AAHA-01 1 78407806 78407808 AGA - NEXN In_Frame_Del p.E528del 0.17 TCGA-2G-AAHA-01 2 242142853 242142853 C T ANO7 Missense_Mutation p.P331S 0.15 deleterious(0) probably_damaging(1) TCGA-2G-AAHA-01 4 55599320 55599320 G C KIT Missense_Mutation p.D816H 0.24 deleterious(0.01) benign(0.292) TCGA-2G-AAHA-01 7 142605705 142605705 T C TRPV5 Missense_Mutation p.D722G 0.03 tolerated(0.18) benign(0.01) TCGA-2G-AAHA-01 8 26217684 26217684 G T PPP2R2A Splice_Site p.X126_splice 0.06 TCGA-2G-AAHA-01 8 8560263 8560263 G T CLDN23 Missense_Mutation p.V119F 0.06 tolerated(0.11) benign(0.042) TCGA-2G-AAHA-01 9 134497251 134497253 AGG - RAPGEF1 In_Frame_Del p.S613del 0.14 TCGA-2G-AAHC-01 16 28511194 28511194 C T IL27 Silent p.E170E 0.09 TCGA-2G-AAHC-01 18 66504042 66504042 G T CCDC102B Missense_Mutation p.Q14H 0.15 tolerated(0.1) benign(0.117) TCGA-2G-AAHC-01 1 101387372 101387372 C G SLC30A7 Missense_Mutation p.L273V 0.06 deleterious(0.01) benign(0.438) TCGA-2G-AAHC-01 1 115130380 115130380 T C DENND2C Silent p.A875A 0.13 TCGA-2G-AAHC-01 1 1656826 1656826 C T CDK11A 5'Flank 0.15 TCGA-2G-AAHC-01 2 113992973 113992973 G T PAX8 Nonsense_Mutation p.S362* 0.08 TCGA-2G-AAHC-01 2 179432386 179432386 C A TTN Missense_Mutation p.R26158I 0.08 TCGA-2G-AAHC-01 3 132199260 132199260 G T DNAJC13 Silent p.V940V 0.08 TCGA-2G-AAHC-01 3 15633164 15633164 G A HACL1 Missense_Mutation p.S84F 0.14 deleterious(0) possibly_damaging(0.562) TCGA-2G-AAHC-01 3 52522318 52522318 A G NISCH Missense_Mutation p.N937S 0.21 tolerated(1) benign(0.018) TCGA-2G-AAHC-01 7 108204781 108204781 G T THAP5 Missense_Mutation p.L348I 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-2G-AAHC-01 7 98633105 98633105 G A SMURF1 Intron 0.06 TCGA-2G-AAHC-01 8 121210074 121210074 C T COL14A1 Missense_Mutation p.P206L 0.15 deleterious(0.01) probably_damaging(1) TCGA-2G-AAHC-01 8 65494286 65494286 C T BHLHE22 Silent p.G313G 0.16 TCGA-2G-AAHC-01 8 67012269 67012269 T C DNAJC5B 3'UTR 0.18 TCGA-2G-AAHC-01 8 74207595 74207595 G A RDH10 Missense_Mutation p.R24H 0.10 tolerated(0.55) possibly_damaging(0.575) TCGA-2G-AAHC-01 X 37312624 37312624 A G PRRG1 Missense_Mutation p.D136G 0.23 tolerated(0.19) benign(0.062) TCGA-2G-AAHG-01 12 120637138 120637138 G A RPLP0 Silent p.L69L 0.21 TCGA-2G-AAHG-01 12 31440707 31440707 G A FAM60A Missense_Mutation p.H123Y 0.14 tolerated(0.31) benign(0.001) TCGA-2G-AAHG-01 14 50789405 50789405 C T ATP5S Missense_Mutation p.S110F 0.22 deleterious(0) probably_damaging(0.999) TCGA-2G-AAHG-01 14 77950769 77950769 G A ISM2 Missense_Mutation p.A175V 0.04 tolerated(0.1) unknown(0) TCGA-2G-AAHG-01 16 29998788 29998788 G A TAOK2 Silent p.A1065A 0.26 TCGA-2G-AAHG-01 17 35445916 35445916 T G ACACA Missense_Mutation p.I2329L 0.28 tolerated(0.29) possibly_damaging(0.836) TCGA-2G-AAHG-01 19 12126012 12126012 G A ZNF433 Missense_Mutation p.T557I 0.32 deleterious(0.01) probably_damaging(0.96) TCGA-2G-AAHG-01 1 144994836 144994836 G A PDE4DIP 5'UTR 0.09 TCGA-2G-AAHG-01 22 37903924 37903924 C T CARD10 Missense_Mutation p.R368H 0.48 tolerated(0.08) benign(0.302) TCGA-2G-AAHG-01 2 66662710 66662710 A T MEIS1 5'UTR 0.20 TCGA-2G-AAHG-01 2 74685732 74685732 G A WBP1 Translation_Start_Site p.M1? 0.29 deleterious_low_confidence(0.01) benign(0.046) TCGA-2G-AAHG-01 5 131811504 131811504 C T AC116366.6 5'Flank 0.39 TCGA-2G-AAHG-01 7 1519274 1519274 C T INTS1 Missense_Mutation p.R1374H 0.16 tolerated(0.12) benign(0.028) TCGA-2G-AAHG-01 8 16853180 16853180 C T FGF20 Missense_Mutation p.G125E 0.24 deleterious(0) probably_damaging(1) TCGA-2G-AAHG-01 X 8434340 8434340 G A VCX3B Silent p.Q219Q 0.41 TCGA-2G-AAHL-01 10 127524897 127524897 C T BCCIP Intron 0.22 TCGA-2G-AAHL-01 10 73768085 73768085 G A CHST3 Missense_Mutation p.M432I 0.26 tolerated(0.42) benign(0.003) TCGA-2G-AAHL-01 11 119206597 119206597 C G RNF26 Silent p.T255T 0.23 TCGA-2G-AAHL-01 11 123489463 123489463 C G GRAMD1B Missense_Mutation p.T655S 0.25 tolerated(0.16) benign(0.006) TCGA-2G-AAHL-01 12 72028578 72028578 T A ZFC3H1 Nonsense_Mutation p.K756* 0.21 TCGA-2G-AAHL-01 15 35529626 35529626 C A ANP32AP1 RNA 0.25 TCGA-2G-AAHL-01 17 45924781 45924781 C T SP6 Missense_Mutation p.A339T 0.06 tolerated(0.34) benign(0.002) TCGA-2G-AAHL-01 1 93599295 93599295 A G MTF2 Missense_Mutation p.K399R 0.25 tolerated(1) benign(0.001) TCGA-2G-AAHL-01 21 28302337 28302337 C G ADAMTS5 Missense_Mutation p.C698S 0.35 deleterious(0) possibly_damaging(0.894) TCGA-2G-AAHL-01 22 39928841 39928841 G T RPS19BP1 5'UTR 0.19 TCGA-2G-AAHL-01 2 11798536 11798536 G A NTSR2 3'UTR 0.14 TCGA-2G-AAHL-01 2 242350476 242350476 G C FARP2 Missense_Mutation p.D147H 0.22 deleterious(0.01) probably_damaging(0.99) TCGA-2G-AAHL-01 2 99992927 99992927 G A EIF5B Missense_Mutation p.S557N 0.17 benign(0.225) TCGA-2G-AAHL-01 3 151012124 151012124 C G GPR87 Missense_Mutation p.A304P 0.29 deleterious(0) probably_damaging(1) TCGA-2G-AAHL-01 4 55599340 55599340 T G KIT Missense_Mutation p.N822K 0.77 deleterious(0) probably_damaging(1) TCGA-2G-AAHL-01 5 126869374 126869374 G C PRRC1 Missense_Mutation p.V273L 0.21 deleterious(0.01) benign(0.301) TCGA-2G-AAHL-01 5 176638277 176638277 A T NSD1 Silent p.G959G 0.29 TCGA-2G-AAHL-01 5 56219619 56219619 C G MIER3 Missense_Mutation p.G364A 0.30 tolerated(0.21) benign(0.261) TCGA-2G-AAHL-01 6 146720361 146720361 C G GRM1 Missense_Mutation p.P729R 0.12 deleterious(0) probably_damaging(0.996) TCGA-2G-AAHL-01 7 150921079 150921079 C T ABCF2 Missense_Mutation p.M163I 0.14 tolerated(0.68) benign(0.05) TCGA-2G-AAHL-01 7 94042436 94042436 T C COL1A2 Silent p.L515L 0.22 TCGA-2G-AAHL-01 8 94936310 94936310 A G PDP1 3'UTR 0.24 TCGA-2G-AAHN-01 10 56077049 56077049 T C PCDH15 Missense_Mutation p.I286M 0.14 deleterious(0) probably_damaging(0.924) TCGA-2G-AAHN-01 10 75558169 75558169 C T ZSWIM8 Silent p.N1378N 0.15 TCGA-2G-AAHN-01 11 1027502 1027502 C T MUC6 Missense_Mutation p.G666D 0.18 unknown(0) TCGA-2G-AAHN-01 11 1775040 1775040 G T CTSD Missense_Mutation p.T355K 0.15 deleterious(0) probably_damaging(0.944) TCGA-2G-AAHN-01 12 51685422 51685422 G A BIN2 Nonsense_Mutation p.Q490* 0.10 TCGA-2G-AAHN-01 15 90931540 90931540 C T IQGAP1 5'UTR 0.06 TCGA-2G-AAHN-01 16 22326410 22326410 G A POLR3E Missense_Mutation p.V175M 0.07 tolerated(0.09) possibly_damaging(0.883) TCGA-2G-AAHN-01 16 89789049 89789049 C A ZNF276 Missense_Mutation p.P106T 0.20 tolerated(0.48) benign(0.026) TCGA-2G-AAHN-01 18 54424172 54424172 G A WDR7 Missense_Mutation p.S783N 0.14 tolerated(0.38) benign(0.002) TCGA-2G-AAHN-01 19 36213928 36213928 C - KMT2B Frame_Shift_Del p.P919Rfs*67 0.10 TCGA-2G-AAHN-01 19 38709684 38709684 G A DPF1 Silent p.L132L 0.12 TCGA-2G-AAHN-01 1 151679178 151679178 G A CELF3 Nonsense_Mutation p.Q319* 0.13 TCGA-2G-AAHN-01 1 227171330 227171332 AGA - ADCK3 In_Frame_Del p.E387del 0.14 TCGA-2G-AAHN-01 1 35656135 35656135 G - SFPQ Frame_Shift_Del p.P460Lfs*53 0.09 TCGA-2G-AAHN-01 20 31827688 31827688 C G BPIFA1 Missense_Mutation p.P134A 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-2G-AAHN-01 2 45630 45630 G A FAM110C Silent p.S252S 0.13 TCGA-2G-AAHN-01 4 52883329 52883329 T A LRRC66 Nonsense_Mutation p.K151* 0.28 TCGA-2G-AAHN-01 4 55599338 55599338 A T KIT Missense_Mutation p.N822Y 0.23 deleterious(0) probably_damaging(1) TCGA-2G-AAHN-01 6 46661672 46661672 G A TDRD6 Missense_Mutation p.C1936Y 0.10 tolerated(0.18) benign(0.013) TCGA-2G-AAHN-01 7 51096848 51096848 C G COBL Missense_Mutation p.D649H 0.22 tolerated(0.08) benign(0.428) TCGA-2G-AAHN-01 9 20414230 20414230 T A MLLT3 Missense_Mutation p.E205V 0.20 deleterious(0.04) possibly_damaging(0.601) TCGA-2G-AAHP-01 11 30032345 30032347 CTC - KCNA4 In_Frame_Del p.E627del 0.51 TCGA-2G-AAHP-01 12 77449732 77449732 A C E2F7 Missense_Mutation p.I91S 0.19 deleterious(0) possibly_damaging(0.83) TCGA-2G-AAHP-01 19 10254526 10254526 C T DNMT1 Missense_Mutation p.R1011Q 0.22 tolerated(0.1) benign(0.248) TCGA-2G-AAHP-01 1 181765833 181765833 G A CACNA1E Missense_Mutation p.G2080S 0.31 tolerated(0.58) probably_damaging(0.968) TCGA-2G-AAHP-01 1 63790167 63790167 G T FOXD3 3'UTR 0.14 TCGA-2G-AAHP-01 2 241922506 241922506 G A AC104809.2 RNA 0.25 TCGA-2G-AAHP-01 2 242189261 242189261 G A HDLBP Missense_Mutation p.R503C 0.37 deleterious(0) probably_damaging(0.943) TCGA-2G-AAHP-01 3 129324383 129324383 C A PLXND1 Missense_Mutation p.R367L 0.40 tolerated(0.83) benign(0.002) TCGA-2G-AAHP-01 4 125592523 125592523 C T ANKRD50 Missense_Mutation p.V637M 0.55 deleterious(0) probably_damaging(0.996) TCGA-2G-AAHP-01 6 127794268 127794268 G T SOGA3 3'UTR 0.08 TCGA-2G-AAHP-01 7 106888937 106888937 T C COG5 Missense_Mutation p.H617R 0.13 tolerated(0.36) benign(0.003) TCGA-2G-AAHP-01 9 114356535 114356535 T G PTGR1 Missense_Mutation p.E40A 0.48 deleterious(0.01) possibly_damaging(0.575) TCGA-2G-AAHT-01 10 97370021 97370021 G A ALDH18A1 Silent p.H713H 0.33 TCGA-2G-AAHT-01 12 106995124 106995124 G A RFX4 Missense_Mutation p.E24K 0.20 deleterious_low_confidence(0.01) probably_damaging(0.981) TCGA-2G-AAHT-01 16 4924423 4924423 C T UBN1 Missense_Mutation p.S671F 0.16 deleterious(0.01) benign(0.429) TCGA-2G-AAHT-01 19 11917208 11917208 T C ZNF491 Missense_Mutation p.L147P 0.14 deleterious(0.03) benign(0.042) TCGA-2G-AAHT-01 1 109241987 109241989 GCA - PRPF38B In_Frame_Del p.S330del 0.24 TCGA-2G-AAHT-01 1 157765850 157765850 G T FCRL1 3'UTR 0.12 TCGA-2G-AAHT-01 1 34643423 34643423 G A C1orf94 Silent p.L11L 0.19 TCGA-2G-AAHT-01 1 50642764 50642765 AG - ELAVL4 Frame_Shift_Del p.S103Ffs*7 0.14 TCGA-2G-AAHT-01 20 4768332 4768332 T A RASSF2 Missense_Mutation p.I254F 0.21 deleterious(0) benign(0.384) TCGA-2G-AAHT-01 20 58560110 58560110 C T CDH26 Silent p.L255L 0.14 TCGA-2G-AAHT-01 22 16449645 16449645 T C OR11H1 Missense_Mutation p.I54V 0.08 tolerated(0.06) benign(0.002) TCGA-2G-AAHT-01 2 179425956 179425956 C T TTN Silent p.K28301K 0.19 TCGA-2G-AAHT-01 2 37450403 37450403 C G CEBPZ Missense_Mutation p.Q597H 0.15 deleterious(0.04) probably_damaging(1) TCGA-2G-AAHT-01 2 65469131 65469131 G C ACTR2 Intron 0.20 TCGA-2G-AAHT-01 4 134072091 134072091 G C PCDH10 Missense_Mutation p.G266R 0.17 deleterious(0) probably_damaging(0.979) TCGA-2G-AAHT-01 4 134073757 134073757 A T PCDH10 Missense_Mutation p.Y821F 0.15 deleterious(0) probably_damaging(0.986) TCGA-2G-AAHT-01 4 55593605 55593605 G T KIT Missense_Mutation p.W557C 0.10 deleterious(0) probably_damaging(0.995) TCGA-2G-AAHT-01 7 157023941 157023941 T C UBE3C Missense_Mutation p.Y801H 0.20 deleterious(0) probably_damaging(0.995) TCGA-2G-AAHT-01 9 125643061 125643061 C G RC3H2 Missense_Mutation p.D258H 0.18 deleterious(0) probably_damaging(0.994) TCGA-2G-AAHT-01 9 139702690 139702690 C T RABL6 Silent p.A14A 0.34 TCGA-2G-AAKD-01 10 103361002 103361002 C T DPCD Missense_Mutation p.R105W 0.23 deleterious(0) probably_damaging(1) TCGA-2G-AAKD-01 12 56092570 56092570 C T ITGA7 Missense_Mutation p.E312K 0.24 tolerated(0.06) benign(0.111) TCGA-2G-AAKD-01 14 75373126 75373126 T G RPS6KL1 3'UTR 0.31 TCGA-2G-AAKD-01 18 21427447 21427480 CCTTTGTGAAGAGATGACGGGGCAGTGCCGCTGC - LAMA3 Frame_Shift_Del p.C1319Pfs*101 0.35 TCGA-2G-AAKD-01 1 151678746 151678746 C T CELF3 Silent p.Q360Q 0.12 TCGA-2G-AAKD-01 1 156384450 156384450 C T C1orf61 Missense_Mutation p.R56Q 0.25 deleterious_low_confidence(0.05) benign(0.261) TCGA-2G-AAKD-01 22 46768831 46768831 G A CELSR1 Missense_Mutation p.P2570S 0.14 deleterious(0.03) possibly_damaging(0.665) TCGA-2G-AAKD-01 2 242742846 242742846 C G GAL3ST2 Nonsense_Mutation p.Y154* 0.22 TCGA-2G-AAKD-01 3 135871188 135871188 C T MSL2 Missense_Mutation p.E179K 0.20 tolerated(0.22) possibly_damaging(0.736) TCGA-2G-AAKD-01 3 167034805 167034805 G A ZBBX Silent p.V394V 0.15 TCGA-2G-AAKD-01 4 178272589 178272589 G A NEIL3 Missense_Mutation p.V309I 0.60 tolerated(0.42) benign(0.002) TCGA-2G-AAKD-01 4 187557879 187557879 C T FAT1 Missense_Mutation p.D1278N 0.18 probably_damaging(1) TCGA-2G-AAKD-01 4 52943177 52943177 G A SPATA18 Missense_Mutation p.V331I 0.12 deleterious(0.03) possibly_damaging(0.899) TCGA-2G-AAKD-01 5 35065642 35065642 G A PRLR Missense_Mutation p.A473V 0.35 tolerated(0.43) benign(0.004) TCGA-2G-AAKD-01 7 128478446 128478446 G T FLNC Silent p.V391V 0.04 TCGA-2G-AAKD-01 7 22348122 22348122 G A RAPGEF5 Silent p.D19D 0.11 TCGA-2G-AAKD-01 8 110346667 110346667 C T ENY2 5'UTR 0.22 TCGA-2G-AAKD-01 8 91078131 91078131 G A CALB1 Silent p.L149L 0.14 TCGA-2G-AAKD-01 9 71629038 71629039 - GCGGCG PRKACG 5'UTR 0.35 TCGA-2G-AAKD-01 X 38145180 38145180 C T RPGR Silent p.E1024E 0.46 TCGA-2G-AAKG-01 10 47948782 47948782 C T FAM21B Missense_Mutation p.P1231S 0.32 tolerated(0.79) probably_damaging(0.986) TCGA-2G-AAKG-01 11 62105556 62105556 G A ASRGL1 Missense_Mutation p.G36D 0.05 tolerated(0.6) benign(0.002) TCGA-2G-AAKG-01 14 105352457 105352457 G A CEP170B Silent p.P675P 0.16 TCGA-2G-AAKG-01 15 40656718 40656718 G A DISP2 Silent p.R192R 0.46 TCGA-2G-AAKG-01 15 48450208 48450208 T C MYEF2 Missense_Mutation p.K323E 0.21 deleterious(0.04) possibly_damaging(0.695) TCGA-2G-AAKG-01 15 85326876 85326876 A C ZNF592 Missense_Mutation p.K324Q 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-2G-AAKG-01 15 85327404 85327404 C A ZNF592 Missense_Mutation p.P500T 0.18 deleterious(0) probably_damaging(0.999) TCGA-2G-AAKG-01 16 67203680 67203680 T C HSF4 Missense_Mutation p.S491P 0.10 deleterious_low_confidence(0.05) possibly_damaging(0.724) TCGA-2G-AAKG-01 17 10309436 10309436 G A MYH8 Missense_Mutation p.A785V 0.22 tolerated(0.12) benign(0.003) TCGA-2G-AAKG-01 19 46345588 46345588 G C SYMPK Missense_Mutation p.A336G 0.26 tolerated(0.29) benign(0.031) TCGA-2G-AAKG-01 19 49248527 49248527 T C IZUMO1 Missense_Mutation p.K85R 0.04 deleterious(0.04) possibly_damaging(0.7) TCGA-2G-AAKG-01 19 49994148 49994162 GCGGCCTTACCTGTG - RPL13A Intron 0.20 TCGA-2G-AAKG-01 1 114448290 114448290 T A DCLRE1B Missense_Mutation p.F28I 0.14 deleterious(0) probably_damaging(1) TCGA-2G-AAKG-01 1 177249621 177249621 C T BRINP2 Silent p.L437L 0.21 TCGA-2G-AAKG-01 1 220151968 220151968 G T EPRS Missense_Mutation p.L1335I 0.05 tolerated(0.2) benign(0.032) TCGA-2G-AAKG-01 1 93299200 93299201 AG - RPL5 Frame_Shift_Del p.D59Yfs*53 0.30 TCGA-2G-AAKG-01 22 50655406 50655406 G A SELO Missense_Mutation p.R565Q 0.29 deleterious(0) probably_damaging(0.997) TCGA-2G-AAKG-01 2 152484132 152484132 C T NEB Missense_Mutation p.D3350N 0.18 probably_damaging(0.984) TCGA-2G-AAKG-01 2 8919088 8919088 T C KIDINS220 Missense_Mutation p.N851S 0.25 tolerated(1) benign(0.002) TCGA-2G-AAKG-01 3 122002841 122002841 C T CASR Silent p.R690R 0.38 TCGA-2G-AAKG-01 3 51812955 51812955 C T IQCF6 Missense_Mutation p.R3H 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-2G-AAKG-01 5 158158144 158158144 T C EBF1 Missense_Mutation p.D353G 0.43 deleterious(0.03) possibly_damaging(0.506) TCGA-2G-AAKG-01 5 65118608 65118608 G T NLN Splice_Site p.X661_splice 0.07 TCGA-2G-AAKG-01 7 23286485 23286486 TC - GPNMB Frame_Shift_Del p.Y5Lfs*15 0.25 TCGA-2G-AAKG-01 7 2473761 2473762 - CGCCCGCC CHST12 3'UTR 0.57 TCGA-2G-AAKG-01 8 77775665 77775665 G A ZFHX4 Missense_Mutation p.D3239N 0.24 probably_damaging(0.992) TCGA-2G-AAKH-01 10 104159438 104159438 C T NFKB2 Missense_Mutation p.R478C 0.14 deleterious(0.03) benign(0.013) TCGA-2G-AAKH-01 10 105145120 105145120 A G TAF5 Missense_Mutation p.R568G 0.05 deleterious(0) probably_damaging(0.989) TCGA-2G-AAKH-01 10 112724174 112724174 T C SHOC2 Missense_Mutation p.S20P 0.38 tolerated(0.27) benign(0) TCGA-2G-AAKH-01 10 123954584 123954584 C A TACC2 Missense_Mutation p.T1955N 0.22 probably_damaging(0.999) TCGA-2G-AAKH-01 10 37442507 37442507 G A ANKRD30A Missense_Mutation p.C516Y 0.03 tolerated(0.63) benign(0) TCGA-2G-AAKH-01 11 126162546 126162546 G A TIRAP Missense_Mutation p.R81H 0.08 deleterious(0) probably_damaging(0.999) TCGA-2G-AAKH-01 11 65310634 65310634 G A LTBP3 Silent p.G846G 0.06 TCGA-2G-AAKH-01 12 104709560 104709560 G A TXNRD1 Missense_Mutation p.G206R 0.05 deleterious(0) probably_damaging(1) TCGA-2G-AAKH-01 12 10562068 10562068 T G KLRC4 Missense_Mutation p.Q36P 0.03 deleterious(0) probably_damaging(0.936) TCGA-2G-AAKH-01 12 130184360 130184360 C T TMEM132D Silent p.T321T 0.09 TCGA-2G-AAKH-01 13 24465297 24465297 T A C1QTNF9B 3'Flank 0.23 TCGA-2G-AAKH-01 13 94680124 94680124 G C GPC6 Missense_Mutation p.D285H 0.11 deleterious(0.02) possibly_damaging(0.883) TCGA-2G-AAKH-01 14 99879294 99879294 G - SETD3 Frame_Shift_Del p.N281Kfs*3 0.10 TCGA-2G-AAKH-01 15 52353621 52353621 C T MAPK6 Missense_Mutation p.P331S 0.27 deleterious(0.02) benign(0.045) TCGA-2G-AAKH-01 15 67073787 67073787 G T SMAD6 Missense_Mutation p.A469S 0.12 deleterious(0) probably_damaging(0.999) TCGA-2G-AAKH-01 16 28488916 28488916 C T CLN3 Missense_Mutation p.C413Y 0.07 deleterious(0.03) probably_damaging(0.996) TCGA-2G-AAKH-01 16 30566444 30566444 G A ZNF764 3'UTR 0.20 TCGA-2G-AAKH-01 16 69177275 69177275 T A CIRH1A Missense_Mutation p.S241T 0.11 tolerated(0.23) benign(0.096) TCGA-2G-AAKH-01 17 18681824 18681824 T A FBXW10 Nonsense_Mutation p.L791* 0.09 TCGA-2G-AAKH-01 18 70534757 70534757 C A NETO1 5'UTR 0.16 TCGA-2G-AAKH-01 19 19906184 19906184 T G ZNF506 Missense_Mutation p.K171T 0.06 deleterious(0) benign(0.297) TCGA-2G-AAKH-01 19 52519423 52519423 A G ZNF614 Silent p.C476C 0.10 TCGA-2G-AAKH-01 19 55329817 55329817 C T KIR3DL1 Missense_Mutation p.P40S 0.09 tolerated(0.11) benign(0.131) TCGA-2G-AAKH-01 19 55997853 55997853 G A NAT14 Missense_Mutation p.A51T 0.24 tolerated(0.29) probably_damaging(0.956) TCGA-2G-AAKH-01 19 6476886 6476886 G T DENND1C Silent p.T220T 0.14 TCGA-2G-AAKH-01 19 7593728 7593728 C T MCOLN1 Missense_Mutation p.R336W 0.04 deleterious(0.02) benign(0.258) TCGA-2G-AAKH-01 1 110300123 110300123 G A EPS8L3 Missense_Mutation p.L318F 0.09 tolerated(0.09) possibly_damaging(0.897) TCGA-2G-AAKH-01 1 175328773 175328773 G A TNR Silent p.Y983Y 0.10 TCGA-2G-AAKH-01 1 235872530 235872530 C T LYST Missense_Mutation p.R3335H 0.13 deleterious(0) probably_damaging(0.998) TCGA-2G-AAKH-01 1 75602877 75602877 C A LHX8 Silent p.S66S 0.07 TCGA-2G-AAKH-01 20 13753234 13753234 T C ESF1 Missense_Mutation p.R393G 0.06 deleterious(0) benign(0.326) TCGA-2G-AAKH-01 21 46945796 46945796 C T SLC19A1 Missense_Mutation p.V410I 0.09 tolerated(0.28) benign(0.104) TCGA-2G-AAKH-01 22 41257722 41257722 G T DNAJB7 Missense_Mutation p.P93T 0.09 deleterious(0) possibly_damaging(0.541) TCGA-2G-AAKH-01 2 10016027 10016027 T A TAF1B Missense_Mutation p.V196D 0.08 tolerated(0.28) benign(0.319) TCGA-2G-AAKH-01 2 61566736 61566736 T C USP34 Missense_Mutation p.T861A 0.13 deleterious(0) probably_damaging(0.995) TCGA-2G-AAKH-01 2 67630985 67630985 C T ETAA1 Missense_Mutation p.P391S 0.13 tolerated(0.34) benign(0.377) TCGA-2G-AAKH-01 2 97475063 97475063 C G CNNM4 Missense_Mutation p.R713G 0.05 deleterious(0) probably_damaging(0.978) TCGA-2G-AAKH-01 3 115738431 115738431 C T LSAMP Missense_Mutation p.V149M 0.07 deleterious(0.01) possibly_damaging(0.861) TCGA-2G-AAKH-01 3 122134865 122134866 CT - WDR5B 5'UTR 0.17 TCGA-2G-AAKH-01 3 151045875 151045875 T G P2RY13 Missense_Mutation p.K323N 0.21 deleterious(0.04) benign(0.001) TCGA-2G-AAKH-01 3 9495475 9495475 C A SETD5 Missense_Mutation p.P800H 0.04 deleterious(0.04) possibly_damaging(0.794) TCGA-2G-AAKH-01 5 140735836 140735836 C G PCDHGA4 Missense_Mutation p.Q357E 0.17 tolerated_low_confidence(0.27) possibly_damaging(0.473) TCGA-2G-AAKH-01 5 154280995 154280995 C T GEMIN5 Missense_Mutation p.C973Y 0.12 deleterious(0) probably_damaging(0.999) TCGA-2G-AAKH-01 5 1879733 1879733 C T IRX4 Silent p.T207T 0.10 TCGA-2G-AAKH-01 6 10586756 10586756 C G GCNT2 Intron 0.06 TCGA-2G-AAKH-01 6 110301311 110301311 C T GPR6 Silent p.R332R 0.09 TCGA-2G-AAKH-01 6 129204396 129204396 G A LAMA2 Silent p.P2P 0.15 TCGA-2G-AAKH-01 6 26200084 26200084 C T HIST1H2BF Missense_Mutation p.R100C 0.06 tolerated_low_confidence(0.09) benign(0.024) TCGA-2G-AAKH-01 6 41555161 41555161 G C FOXP4 Silent p.S261S 0.03 TCGA-2G-AAKH-01 6 83732269 83732269 A T UBE3D Missense_Mutation p.V250D 0.03 deleterious(0) probably_damaging(0.974) TCGA-2G-AAKH-01 7 117368303 117368303 A G CTTNBP2 Missense_Mutation p.S1299P 0.05 tolerated(0.37) benign(0.003) TCGA-2G-AAKH-01 7 149483197 149483197 G T SSPO RNA 0.13 TCGA-2G-AAKH-01 7 27150188 27150188 G T HOXA3 Missense_Mutation p.F24L 0.09 tolerated(0.1) benign(0.028) TCGA-2G-AAKH-01 7 42005961 42005961 G A GLI3 Missense_Mutation p.R904C 0.10 deleterious(0) probably_damaging(0.999) TCGA-2G-AAKH-01 7 70249953 70249953 T C AUTS2 Silent p.P724P 0.03 TCGA-2G-AAKH-01 7 82455963 82455963 G A PCLO Missense_Mutation p.T4786I 0.10 unknown(0) TCGA-2G-AAKH-01 8 37689047 37689047 G A GPR124 Missense_Mutation p.E347K 0.18 deleterious(0) benign(0.297) TCGA-2G-AAKH-01 8 3889549 3889549 A G CSMD1 Missense_Mutation p.I163T 0.05 possibly_damaging(0.709) TCGA-2G-AAKH-01 9 129596183 129596183 G A ZBTB43 Silent p.E465E 0.40 TCGA-2G-AAKH-01 X 109695094 109695094 G A RGAG1 Missense_Mutation p.G417R 0.13 tolerated(1) benign(0.004) TCGA-2G-AAKH-01 X 123040895 123040895 G T XIAP Missense_Mutation p.C453F 0.16 deleterious(0) probably_damaging(1) TCGA-2G-AAKH-01 X 18276363 18276374 ACAGACTTGAGA - SCML2 Splice_Site p.X357_splice 0.08 TCGA-2G-AAKH-01 X 30261215 30261215 T C MAGEB4 Silent p.V321V 0.12 TCGA-2G-AAKH-01 X 30326687 30326687 G C NR0B1 Missense_Mutation p.T265R 0.07 deleterious(0) probably_damaging(0.999) TCGA-2G-AAKH-01 X 47496196 47496196 C T ELK1 3'UTR 0.30 TCGA-2G-AAKH-01 X 71829496 71829496 G T PHKA1 Missense_Mutation p.P862T 0.26 deleterious(0.05) probably_damaging(0.984) TCGA-2G-AAKL-01 10 63700112 63700118 AACCCTA - ARID5B Frame_Shift_Del p.L151Vfs*24 0.49 TCGA-2G-AAKL-01 12 123057483 123057483 G A KNTC1 Splice_Site p.X674_splice 0.31 TCGA-2G-AAKL-01 14 65054073 65054073 G A PPP1R36 Missense_Mutation p.M291I 0.24 tolerated(0.15) benign(0.234) TCGA-2G-AAKL-01 16 30594036 30594036 G T ZNF785 Missense_Mutation p.L355M 0.07 tolerated(0.72) probably_damaging(0.992) TCGA-2G-AAKL-01 19 15230298 15230298 C T ILVBL Missense_Mutation p.R282Q 0.06 tolerated(0.23) benign(0.107) TCGA-2G-AAKL-01 1 55505314 55505314 G C PCSK9 5'UTR 0.29 TCGA-2G-AAKL-01 20 40033237 40033237 T C CHD6 Missense_Mutation p.N2715S 0.24 deleterious_low_confidence(0) benign(0.174) TCGA-2G-AAKL-01 21 37692494 37692494 C T MORC3 5'UTR 0.45 TCGA-2G-AAKL-01 2 113147115 113147115 A C RGPD8 Missense_Mutation p.F1136C 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-2G-AAKL-01 2 16085979 16085979 C A MYCN Missense_Mutation p.N385K 0.24 deleterious(0) probably_damaging(0.963) TCGA-2G-AAKL-01 2 65571938 65571938 C T SPRED2 Missense_Mutation p.R40H 0.04 tolerated(0.59) probably_damaging(0.936) TCGA-2G-AAKL-01 3 142839860 142839860 C T CHST2 Missense_Mutation p.L68F 0.18 deleterious_low_confidence(0) benign(0.184) TCGA-2G-AAKL-01 3 16216584 16216584 G A GALNT15 5'UTR 0.39 TCGA-2G-AAKL-01 4 151829586 151829586 T G LRBA Missense_Mutation p.S465R 0.33 deleterious(0) probably_damaging(0.993) TCGA-2G-AAKL-01 6 31605424 31605424 G T PRRC2A 3'UTR 0.11 TCGA-2G-AAKL-01 6 32023843 32023843 G A TNXB Missense_Mutation p.S2751L 0.24 probably_damaging(0.975) TCGA-2G-AAKL-01 7 12644158 12644158 G C SCIN Missense_Mutation p.G179A 0.16 deleterious(0.01) possibly_damaging(0.875) TCGA-2G-AAKL-01 7 143806941 143806941 G C OR2A2 Missense_Mutation p.R89T 0.18 tolerated(0.07) benign(0.012) TCGA-2G-AAKL-01 7 2946237 2946237 C T CARD11 3'UTR 0.08 TCGA-2G-AAKL-01 7 44240804 44240804 G A YKT6 Missense_Mutation p.D24N 0.22 tolerated(0.08) benign(0.067) TCGA-2G-AAKL-01 8 100479794 100479794 C G VPS13B Missense_Mutation p.R1200G 0.15 tolerated(0.06) benign(0.142) TCGA-2G-AAKL-01 8 10464479 10464479 C T RP1L1 Missense_Mutation p.A2377T 0.16 unknown(0) TCGA-2G-AAKL-01 8 145583775 145583775 C A SLC52A2 Missense_Mutation p.A208D 0.25 tolerated(0.06) probably_damaging(0.999) TCGA-2G-AAKL-01 8 23702390 23702406 TGTTGAAGTCAGCTCGT CA STC1 In_Frame_Del p.R208_R213delinsG 0.19 TCGA-2G-AAKL-01 8 94937453 94937480 CAGAATTTGTTTCAATTGAAAATAGACT - PDP1 3'UTR 0.11 TCGA-2G-AAKL-01 9 36037093 36037093 C T RECK Missense_Mutation p.A33V 0.20 tolerated_low_confidence(0.26) unknown(0) TCGA-2G-AAKL-01 9 67934763 67934763 A T ANKRD20A1 Missense_Mutation p.K178I 0.26 deleterious(0) benign(0.164) TCGA-2G-AAKM-01 10 126694478 126694478 C T CTBP2 Intron 0.15 TCGA-2G-AAKM-01 10 135369120 135369120 G T SYCE1 Missense_Mutation p.Q271K 0.07 tolerated(0.06) benign(0.001) TCGA-2G-AAKM-01 12 122257461 122257461 G A SETD1B Silent p.E1147E 0.06 TCGA-2G-AAKM-01 15 72767235 72767235 C T ARIH1 Silent p.G85G 0.11 TCGA-2G-AAKM-01 18 19997302 19997302 G C CTAGE1 Missense_Mutation p.A158G 0.32 deleterious(0.03) possibly_damaging(0.69) TCGA-2G-AAKM-01 3 38207295 38207295 T G OXSR1 5'UTR 0.19 TCGA-2G-AAKM-01 6 121768358 121768358 A G GJA1 Missense_Mutation p.N122S 0.22 tolerated(0.8) benign(0.005) TCGA-2G-AAKM-01 6 27792246 27792246 C T HIST1H4J 3'UTR 0.06 TCGA-2G-AAKM-01 7 99015089 99015089 C - BUD31 Frame_Shift_Del p.D85Efs*4 0.09 TCGA-2G-AAKM-01 X 51239374 51239374 G T NUDT11 5'UTR 0.33 TCGA-2G-AAKO-01 13 52035085 52035085 C A RPS4XP16 RNA 0.08 TCGA-2G-AAKO-01 16 28511197 28511197 T C IL27 Silent p.E169E 0.10 TCGA-2G-AAKO-01 17 21188136 21188136 C T MAP2K3 5'UTR 0.08 TCGA-2G-AAKO-01 17 8048034 8048034 C T PER1 Intron 0.11 TCGA-2G-AAKO-01 19 19655587 19655587 G A CILP2 Missense_Mutation p.A745T 0.24 tolerated(0.58) benign(0.036) TCGA-2G-AAKO-01 22 25960980 25960980 G A ADRBK2 5'UTR 0.13 TCGA-2G-AAKO-01 4 55593603 55593603 T G KIT Missense_Mutation p.W557G 0.10 deleterious(0) probably_damaging(0.993) TCGA-2G-AAKO-01 8 30889696 30889696 G T PURG Silent p.T201T 0.07 TCGA-2G-AAKO-01 X 24228773 24228773 C T ZFX Silent p.H566H 0.12 TCGA-2G-AAKO-01 X 41204800 41204801 - G DDX3X Frame_Shift_Ins 0.10 TCGA-2G-AAL5-01 10 105992061 105992061 C A WDR96 5'UTR 0.43 TCGA-2G-AAL5-01 11 64662855 64662855 C A ATG2A Silent p.L1829L 0.44 TCGA-2G-AAL5-01 11 99715691 99715691 C T CNTN5 Missense_Mutation p.P129S 0.22 deleterious(0) probably_damaging(0.999) TCGA-2G-AAL5-01 12 113629502 113629502 G A RITA1 Silent p.T230T 0.27 TCGA-2G-AAL5-01 12 129467613 129467613 T C GLT1D1 Missense_Mutation p.L260P 0.31 deleterious(0) possibly_damaging(0.883) TCGA-2G-AAL5-01 12 52758951 52758951 G A KRT85 Missense_Mutation p.R142C 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-2G-AAL5-01 13 51287151 51287151 C T DLEU7 3'UTR 0.38 TCGA-2G-AAL5-01 16 67473035 67473035 G A ATP6V0D1 Missense_Mutation p.R219C 0.44 deleterious(0) probably_damaging(0.995) TCGA-2G-AAL5-01 16 81164121 81164121 C T PKD1L2 RNA 0.48 TCGA-2G-AAL5-01 17 12693057 12693057 G T ARHGAP44 5'UTR 0.26 TCGA-2G-AAL5-01 17 2585079 2585080 GT - PAFAH1B1 Frame_Shift_Del p.W407Gfs*21 0.24 TCGA-2G-AAL5-01 17 79910771 79910771 T G NOTUM 3'UTR 0.35 TCGA-2G-AAL5-01 18 8609900 8609900 A T RAB12 Missense_Mutation p.M59L 0.46 tolerated(1) benign(0.016) TCGA-2G-AAL5-01 19 10908073 10908073 C G DNM2 Missense_Mutation p.P405R 0.28 deleterious(0) probably_damaging(1) TCGA-2G-AAL5-01 19 18054583 18054583 C A CCDC124 3'UTR 0.28 TCGA-2G-AAL5-01 19 36673726 36673734 TGTCGTGTG C ZNF565 Frame_Shift_Del p.T379Sfs*11 0.33 TCGA-2G-AAL5-01 19 46997528 46997528 C T PNMAL2 Missense_Mutation p.A399T 0.28 deleterious(0) probably_damaging(0.997) TCGA-2G-AAL5-01 1 176853487 176853487 T A ASTN1 Nonsense_Mutation p.K1072* 0.25 TCGA-2G-AAL5-01 1 204092277 204092277 G T SOX13 Missense_Mutation p.R391L 0.60 tolerated(0.08) possibly_damaging(0.769) TCGA-2G-AAL5-01 1 28087395 28087396 - C FAM76A 3'Flank 0.36 TCGA-2G-AAL5-01 1 53343407 53343409 CTT - ZYG11A In_Frame_Del p.F533del 0.25 TCGA-2G-AAL5-01 1 90058405 90058405 A T LRRC8B Missense_Mutation p.N739Y 0.23 tolerated(1) benign(0) TCGA-2G-AAL5-01 20 60887507 60887507 G A LAMA5 Silent p.L3103L 0.50 TCGA-2G-AAL5-01 2 112760766 112760766 T C MERTK Splice_Site p.X596_splice 0.26 TCGA-2G-AAL5-01 2 113480334 113480334 C T NT5DC4 Silent p.C145C 0.35 TCGA-2G-AAL5-01 3 122631795 122631795 G A SEMA5B Missense_Mutation p.R928C 0.27 deleterious(0.01) probably_damaging(0.987) TCGA-2G-AAL5-01 3 52721395 52721396 AG - GNL3 Frame_Shift_Del p.R70Afs*2 0.22 TCGA-2G-AAL5-01 5 149767638 149767638 G A TCOF1 Silent p.Q1011Q 0.04 TCGA-2G-AAL5-01 6 88757823 88757823 C A SPACA1 Missense_Mutation p.T67N 0.30 tolerated_low_confidence(0.45) benign(0.021) TCGA-2G-AAL5-01 7 23016321 23016321 G A FAM126A Missense_Mutation p.A174V 0.26 deleterious(0.01) probably_damaging(0.938) TCGA-2G-AAL5-01 7 2472936 2472936 G T CHST12 Missense_Mutation p.R221L 0.08 deleterious(0.01) possibly_damaging(0.836) TCGA-2G-AAL5-01 8 145623257 145623257 T C CPSF1 Missense_Mutation p.E662G 0.09 tolerated(0.1) benign(0.161) TCGA-2G-AAL5-01 8 97263294 97263294 G A MTERFD1 Missense_Mutation p.P173S 0.29 deleterious(0.02) benign(0.028) TCGA-2G-AAL5-01 9 127089658 127089658 G T NEK6 Missense_Mutation p.V220L 0.05 tolerated(0.19) possibly_damaging(0.876) TCGA-2G-AAL5-01 9 745199 745199 G A KANK1 Silent p.T1341T 0.43 TCGA-2G-AAL5-01 X 153583390 153583390 C G FLNA Missense_Mutation p.V1674L 0.44 deleterious(0.02) probably_damaging(0.976) TCGA-2G-AAL7-01 11 118958997 118958997 C T HMBS Silent p.R22R 0.21 TCGA-2G-AAL7-01 12 52886666 52886666 C T KRT6A Missense_Mutation p.G103S 0.17 tolerated(0.22) unknown(0) TCGA-2G-AAL7-01 12 6965261 6965261 C T USP5 Silent p.L129L 0.15 TCGA-2G-AAL7-01 15 74914482 74914482 C T CLK3 Missense_Mutation p.R279C 0.21 deleterious(0.03) benign(0.003) TCGA-2G-AAL7-01 16 20471599 20471599 G A ACSM2A Missense_Mutation p.A55T 0.33 tolerated(0.38) probably_damaging(0.998) TCGA-2G-AAL7-01 17 13972737 13972737 C T COX10 5'Flank 0.24 TCGA-2G-AAL7-01 17 57126703 57126703 G C TRIM37 Missense_Mutation p.P456A 0.21 deleterious_low_confidence(0.01) benign(0.156) TCGA-2G-AAL7-01 19 19638552 19638552 C A NDUFA13 Silent p.I96I 0.34 TCGA-2G-AAL7-01 19 47570041 47570041 C T ZC3H4 Missense_Mutation p.E1162K 0.19 unknown(0) TCGA-2G-AAL7-01 19 59063125 59063125 C A CHMP2A Missense_Mutation p.G187V 0.30 tolerated(0.26) possibly_damaging(0.772) TCGA-2G-AAL7-01 19 6413945 6413946 GA - KHSRP 3'UTR 0.48 TCGA-2G-AAL7-01 1 161559439 161559439 C A RP11-25K21.6 Intron 0.64 TCGA-2G-AAL7-01 1 182798766 182798766 C A NPL 3'UTR 0.03 TCGA-2G-AAL7-01 1 197390687 197390687 G T CRB1 Missense_Mutation p.A577S 0.15 tolerated(0.18) benign(0.314) TCGA-2G-AAL7-01 1 205307669 205307669 A C KLHDC8A Missense_Mutation p.F271L 0.34 deleterious(0.04) possibly_damaging(0.617) TCGA-2G-AAL7-01 1 235904732 235904732 G A LYST Missense_Mutation p.P2783L 0.31 deleterious(0.02) benign(0.091) TCGA-2G-AAL7-01 1 59042191 59042191 G A TACSTD2 Missense_Mutation p.A213V 0.25 tolerated(0.07) benign(0.004) TCGA-2G-AAL7-01 22 17072477 17072477 C G CCT8L2 Missense_Mutation p.E322Q 0.24 tolerated(0.18) benign(0.292) TCGA-2G-AAL7-01 2 201721420 201721420 G A CLK1 Missense_Mutation p.P390S 0.28 deleterious(0) probably_damaging(0.993) TCGA-2G-AAL7-01 4 113568112 113568113 - T LARP7 Splice_Site p.X191_splice 0.18 TCGA-2G-AAL7-01 5 140231458 140231458 C T PCDHA9 Intron 0.52 TCGA-2G-AAL7-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.10 TCGA-2G-AAL7-01 6 33179304 33179304 G T RING1 Missense_Mutation p.K275N 0.09 tolerated(0.29) unknown(0) TCGA-2G-AAL7-01 8 104831755 104831755 G A RIMS2 Intron 0.09 TCGA-2G-AAL7-01 8 120435213 120435213 T G NOV Missense_Mutation p.N305K 0.17 tolerated(0.65) benign(0.403) TCGA-2G-AAL7-01 8 43152474 43152474 C G POTEA RNA 0.23 TCGA-2G-AAL7-01 X 104463847 104463847 C T TEX13A Silent p.L343L 0.31 TCGA-2G-AAL7-01 X 109561071 109561071 C A AMMECR1 Missense_Mutation p.G77C 0.06 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-2G-AAL7-01 X 117043475 117043475 G A KLHL13 Silent p.A388A 0.39 TCGA-2G-AALF-01 11 121028809 121028809 A G TECTA Missense_Mutation p.D1522G 0.75 tolerated(0.06) possibly_damaging(0.906) TCGA-2G-AALF-01 11 281495 281495 C T NLRP6 Silent p.P587P 0.24 TCGA-2G-AALF-01 12 57600263 57600263 G A LRP1 Silent p.E3866E 0.56 TCGA-2G-AALF-01 15 31619961 31619961 G C KLF13 Silent p.S182S 0.25 TCGA-2G-AALF-01 16 89985992 89985992 G A MC1R Missense_Mutation p.R109Q 0.17 tolerated(0.54) benign(0.015) TCGA-2G-AALF-01 17 17480330 17480330 G A PEMT Silent p.C36C 0.29 TCGA-2G-AALF-01 17 29164229 29164229 A C ATAD5 Missense_Mutation p.K658T 0.21 deleterious(0) probably_damaging(0.986) TCGA-2G-AALF-01 17 39296134 39296134 G A KRTAP4-6 Silent p.S202S 0.36 TCGA-2G-AALF-01 17 45914165 45914165 G A LRRC46 Silent p.R215R 0.29 TCGA-2G-AALF-01 17 76075489 76075489 A G TNRC6C Missense_Mutation p.N1072S 0.25 tolerated(0.09) benign(0.007) TCGA-2G-AALF-01 19 33183483 33183483 G T NUDT19 Missense_Mutation p.R206L 0.06 tolerated(0.16) possibly_damaging(0.576) TCGA-2G-AALF-01 19 36606393 36606393 G A TBCB 5'UTR 0.15 TCGA-2G-AALF-01 19 45418139 45418139 C T APOC1 5'UTR 0.20 TCGA-2G-AALF-01 1 209799360 209799361 CA - LAMB3 Nonsense_Mutation p.C536* 0.25 TCGA-2G-AALF-01 1 36888403 36888403 A T OSCP1 Missense_Mutation p.Y239N 0.19 tolerated(0.24) benign(0.009) TCGA-2G-AALF-01 22 40055123 40055123 T G CACNA1I Splice_Site p.X777_splice 0.13 TCGA-2G-AALF-01 2 152381766 152381766 C T NEB Missense_Mutation p.V7395I 0.25 possibly_damaging(0.892) TCGA-2G-AALF-01 6 157100008 157100008 A C ARID1B Silent p.G315G 0.35 TCGA-2G-AALF-01 6 31631709 31631709 G A GPANK1 Missense_Mutation p.L183F 0.44 deleterious(0) probably_damaging(1) TCGA-2G-AALF-01 7 105105799 105105799 G A PUS7 Missense_Mutation p.P530S 0.19 deleterious(0) probably_damaging(0.999) TCGA-2G-AALF-01 7 20406739 20406739 T G ITGB8 Silent p.V106V 0.24 TCGA-2G-AALF-01 7 75615073 75615073 C G POR Missense_Mutation p.F525L 0.16 tolerated(0.46) benign(0.001) TCGA-2G-AALF-01 9 136220985 136220985 G A SURF1 Intron 0.47 TCGA-2G-AALF-01 X 47030579 47030579 G T RBM10 Missense_Mutation p.E118D 0.08 tolerated_low_confidence(0.41) benign(0.005) TCGA-2G-AALF-01 X 83361424 83361424 A G RPS6KA6 Silent p.S438S 0.45 TCGA-2G-AALG-01 10 27529472 27529472 G A ACBD5 Intron 0.26 TCGA-2G-AALG-01 16 2221328 2221328 T C TRAF7 Missense_Mutation p.F138L 0.22 deleterious(0.04) benign(0.014) TCGA-2G-AALG-01 17 46154242 46154242 C T CBX1 Nonsense_Mutation p.W42* 0.09 TCGA-2G-AALG-01 17 4883462 4883462 C G CAMTA2 Missense_Mutation p.Q408H 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.781) TCGA-2G-AALG-01 17 74008164 74008164 T G EVPL Missense_Mutation p.T794P 0.06 deleterious(0.03) benign(0.034) TCGA-2G-AALG-01 19 55994302 55994302 T C ZNF628 Missense_Mutation p.L581P 0.09 deleterious(0.02) probably_damaging(0.998) TCGA-2G-AALG-01 1 120839624 120839624 G A FAM72B 5'UTR 0.04 TCGA-2G-AALG-01 1 183816714 183816714 G A RGL1 Silent p.Q86Q 0.23 TCGA-2G-AALG-01 1 24151935 24151935 G T HMGCL 5'UTR 0.07 TCGA-2G-AALG-01 20 21319698 21319698 G A XRN2 Missense_Mutation p.R417Q 0.27 deleterious(0.02) probably_damaging(0.987) TCGA-2G-AALG-01 3 49841691 49841691 G A FAM212A Silent p.Q45Q 0.25 TCGA-2G-AALG-01 4 6107587 6107589 CTC - JAKMIP1 In_Frame_Del p.E79del 0.18 TCGA-2G-AALG-01 6 89872056 89872056 G T PM20D2 3'UTR 0.07 TCGA-2G-AALG-01 9 98209504 98209524 CGGGCCCCGCGAGGGCCCCAG - PTCH1 In_Frame_Del p.W1339_R1345del 0.25 TCGA-2G-AALG-01 Y 27190107 27190107 G A BPY2C Missense_Mutation p.P22S 0.44 unknown(0) TCGA-2G-AALN-01 10 48429456 48429456 G C GDF10 Missense_Mutation p.R144G 0.32 deleterious(0.01) possibly_damaging(0.477) TCGA-2G-AALN-01 11 63662685 63662685 G A MARK2 Missense_Mutation p.G37S 0.18 tolerated(0.34) benign(0.019) TCGA-2G-AALN-01 11 65733919 65733919 G A SART1 Silent p.L360L 0.44 TCGA-2G-AALN-01 12 57883693 57883693 A G MARS Silent p.L143L 0.18 TCGA-2G-AALN-01 14 50798935 50798936 CT - CDKL1 Intron 0.19 TCGA-2G-AALN-01 16 30080966 30080966 G A ALDOA Silent p.L311L 0.39 TCGA-2G-AALN-01 16 72110949 72110949 A G HPR Missense_Mutation p.H339R 0.19 deleterious(0) benign(0.001) TCGA-2G-AALN-01 16 75563575 75563575 C T CHST5 Silent p.A236A 0.17 TCGA-2G-AALN-01 1 15654544 15654544 G - FHAD1 Intron 0.69 TCGA-2G-AALN-01 21 39947610 39947610 G T ERG Silent p.V5V 0.15 TCGA-2G-AALN-01 22 20759727 20759727 A T ZNF74 Missense_Mutation p.Q135L 0.12 tolerated(0.14) benign(0.002) TCGA-2G-AALN-01 2 175614728 175614728 G A CHRNA1 Silent p.I341I 0.27 TCGA-2G-AALN-01 3 128344482 128344482 G A RPN1 Silent p.F430F 0.28 TCGA-2G-AALN-01 4 73958006 73958006 T C ANKRD17 Missense_Mutation p.E1780G 0.37 benign(0.097) TCGA-2G-AALN-01 5 158523398 158523398 T C EBF1 Missense_Mutation p.K103R 0.05 deleterious(0.02) benign(0.172) TCGA-2G-AALN-01 7 121682713 121682713 G A PTPRZ1 Silent p.Q1951Q 0.26 TCGA-2G-AALN-01 9 140129149 140129149 C T SLC34A3 Missense_Mutation p.A434V 0.14 deleterious(0) probably_damaging(0.996) TCGA-2G-AALN-01 9 162458 162458 T C CBWD1 Missense_Mutation p.I168V 0.28 tolerated(1) benign(0.001) TCGA-2G-AALO-01 11 60971070 60971070 C A PGA3 Missense_Mutation p.L12I 0.51 deleterious(0.03) possibly_damaging(0.828) TCGA-2G-AALO-01 11 76370933 76370933 C T LRRC32 Silent p.L568L 0.12 TCGA-2G-AALO-01 12 13761690 13761690 A G GRIN2B Silent p.P619P 0.03 TCGA-2G-AALO-01 16 50707856 50707856 C A SNX20 Missense_Mutation p.V138L 0.21 tolerated(0.06) benign(0.208) TCGA-2G-AALO-01 18 24127403 24127403 G T KCTD1 Intron 0.07 TCGA-2G-AALO-01 1 186055461 186055461 G A HMCN1 Missense_Mutation p.G2990S 0.27 probably_damaging(0.999) TCGA-2G-AALO-01 20 30697522 30697522 T C TM9SF4 5'UTR 0.18 TCGA-2G-AALO-01 21 47695160 47695160 C A MCM3AP Missense_Mutation p.R646S 0.07 deleterious(0) probably_damaging(0.994) TCGA-2G-AALO-01 22 51045123 51045123 C A MAPK8IP2 Missense_Mutation p.P720H 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-2G-AALO-01 4 185550512 185550512 A G CASP3 Missense_Mutation p.F250L 0.05 tolerated(0.64) benign(0.099) TCGA-2G-AALO-01 5 162901165 162901165 T C HMMR Missense_Mutation p.L336P 0.06 deleterious(0.01) probably_damaging(1) TCGA-2G-AALO-01 7 20824970 20824970 C T SP8 Missense_Mutation p.G156S 0.09 tolerated(0.76) benign(0.007) TCGA-2G-AALO-01 7 5024702 5024702 G A RBAK-RBAKDN 5'UTR 0.15 TCGA-2G-AALO-01 8 6679483 6679483 G T XKR5 RNA 0.07 TCGA-2G-AALO-01 8 9623905 9623905 A - TNKS Frame_Shift_Del p.H1237Pfs*18 0.12 TCGA-2G-AALO-01 9 14116325 14116325 T A NFIB Silent p.V422V 0.28 TCGA-2G-AALP-01 10 104229774 104229774 C T TMEM180 Missense_Mutation p.L65F 0.28 tolerated(0.23) benign(0.019) TCGA-2G-AALP-01 10 105110539 105110539 C T PCGF6 Silent p.E95E 0.12 TCGA-2G-AALP-01 10 127408277 127408277 C T EDRF1 5'UTR 0.14 TCGA-2G-AALP-01 10 134713076 134713076 G A TTC40 Nonsense_Mutation p.R1007* 0.19 TCGA-2G-AALP-01 10 90697898 90697898 C G ACTA2 Missense_Mutation p.G304R 0.35 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-2G-AALP-01 11 5020846 5020846 G T OR51L1 Missense_Mutation p.D212Y 0.42 deleterious(0) probably_damaging(1) TCGA-2G-AALP-01 12 106857290 106857290 G C POLR3B Missense_Mutation p.V869L 0.21 deleterious(0.01) possibly_damaging(0.768) TCGA-2G-AALP-01 12 117657988 117657988 A G NOS1 Silent p.C1388C 0.31 TCGA-2G-AALP-01 12 120637146 120637146 C G RPLP0 Missense_Mutation p.R66P 0.20 deleterious(0) possibly_damaging(0.88) TCGA-2G-AALP-01 12 3701426 3701426 C A PRMT8 Missense_Mutation p.Q337K 0.14 deleterious(0) possibly_damaging(0.762) TCGA-2G-AALP-01 12 52960749 52960749 G A KRT74 3'UTR 0.31 TCGA-2G-AALP-01 12 54108460 54108460 A G CALCOCO1 Silent p.S468S 0.22 TCGA-2G-AALP-01 12 56154395 56154395 C T SARNP Silent p.R177R 0.23 TCGA-2G-AALP-01 14 68282599 68282599 C T ZFYVE26 Missense_Mutation p.E28K 0.32 deleterious(0.01) possibly_damaging(0.736) TCGA-2G-AALP-01 15 42143126 42143126 C T SPTBN5 Missense_Mutation p.G3616E 0.38 benign(0.039) TCGA-2G-AALP-01 15 75094846 75094846 C T CSK Missense_Mutation p.H449Y 0.41 tolerated_low_confidence(1) benign(0) TCGA-2G-AALP-01 16 1818243 1818243 G A MAPK8IP3 Silent p.G1201G 0.11 TCGA-2G-AALP-01 16 86614995 86614995 G A FOXL1 3'UTR 0.28 TCGA-2G-AALP-01 17 16342606 16342606 G T TRPV2 3'Flank 0.16 TCGA-2G-AALP-01 17 39594811 39594811 A G KRT38 Missense_Mutation p.S318P 0.27 deleterious(0.02) probably_damaging(0.993) TCGA-2G-AALP-01 17 39912437 39912437 G A JUP Silent p.P692P 0.35 TCGA-2G-AALP-01 18 3452011 3452011 G A TGIF1 Missense_Mutation p.V12M 0.47 deleterious_low_confidence(0) unknown(0) TCGA-2G-AALP-01 19 16973303 16973303 G T SIN3B Missense_Mutation p.S400I 0.07 deleterious(0) probably_damaging(0.999) TCGA-2G-AALP-01 1 178063808 178063808 C T RASAL2 Nonsense_Mutation p.Q61* 0.23 TCGA-2G-AALP-01 1 182443575 182443575 G C RGSL1 Silent p.P443P 0.30 TCGA-2G-AALP-01 1 214788200 214788200 C G CENPF Missense_Mutation p.T63R 0.25 benign(0.106) TCGA-2G-AALP-01 1 93580262 93580262 G T MTF2 Nonsense_Mutation p.E102* 0.29 TCGA-2G-AALP-01 20 21689976 21689976 G T PAX1 Silent p.P392P 0.58 TCGA-2G-AALP-01 20 23066500 23066500 C A CD93 Silent p.P110P 0.48 TCGA-2G-AALP-01 21 38884945 38884945 C G DYRK1A 3'Flank 0.13 TCGA-2G-AALP-01 21 40792705 40792705 C T LCA5L Missense_Mutation p.R301Q 0.19 tolerated(0.28) benign(0.177) TCGA-2G-AALP-01 22 39884487 39884487 A T MGAT3 Missense_Mutation p.I379F 0.38 tolerated(0.14) benign(0.442) TCGA-2G-AALP-01 2 103061722 103061722 C T IL18RAP Missense_Mutation p.R332C 0.23 deleterious(0.01) possibly_damaging(0.901) TCGA-2G-AALP-01 2 131522242 131522242 C T AMER3 3'UTR 0.22 TCGA-2G-AALP-01 2 173686512 173686512 A C RAPGEF4 Intron 0.24 TCGA-2G-AALP-01 2 224463779 224463779 G A SCG2 Silent p.S74S 0.18 TCGA-2G-AALP-01 2 233925276 233925276 G C INPP5D Missense_Mutation p.V30L 0.23 tolerated(0.07) probably_damaging(0.998) TCGA-2G-AALP-01 2 77746912 77746912 G C LRRTM4 Missense_Mutation p.T28R 0.27 tolerated(0.13) benign(0.052) TCGA-2G-AALP-01 3 122645325 122645325 G A SEMA5B Silent p.G404G 0.27 TCGA-2G-AALP-01 4 155505183 155505183 G T FGA 3'UTR 0.31 TCGA-2G-AALP-01 4 54968011 54968021 GCACTACGCGC - GSX2 Frame_Shift_Del p.H280Lfs*4 0.35 TCGA-2G-AALP-01 5 141059697 141059697 G A ARAP3 Silent p.A119A 0.43 TCGA-2G-AALP-01 5 178358837 178358837 G T ZFP2 Missense_Mutation p.V175F 0.05 tolerated(0.06) possibly_damaging(0.845) TCGA-2G-AALP-01 5 68530860 68530860 G A CDK7 Missense_Mutation p.E20K 0.38 deleterious(0) benign(0.426) TCGA-2G-AALP-01 6 37446211 37446211 C T CMTR1 Missense_Mutation p.S727F 0.34 deleterious(0) possibly_damaging(0.875) TCGA-2G-AALP-01 6 41738884 41738884 C T FRS3 Missense_Mutation p.A318T 0.06 tolerated(0.09) benign(0.019) TCGA-2G-AALP-01 6 90486377 90486377 G C MDN1 Missense_Mutation p.T588R 0.31 benign(0.045) TCGA-2G-AALP-01 7 100808141 100808141 G A VGF 5'UTR 0.20 TCGA-2G-AALP-01 7 121944000 121944000 G T FEZF1 Missense_Mutation p.N164K 0.15 deleterious(0) probably_damaging(0.979) TCGA-2G-AALP-01 7 133812184 133812184 A T LRGUK Nonsense_Mutation p.R22* 0.14 TCGA-2G-AALP-01 7 150690854 150690854 C A NOS3 5'UTR 0.18 TCGA-2G-AALP-01 7 50680448 50680454 CTGAACG - GRB10 Frame_Shift_Del p.A393Dfs*50 0.16 TCGA-2G-AALP-01 7 76825646 76825646 A G FGL2 Missense_Mutation p.S424P 0.28 tolerated(0.07) benign(0.443) TCGA-2G-AALP-01 7 94539755 94539755 T C PPP1R9A Silent p.D110D 0.48 TCGA-2G-AALP-01 7 99818416 99818416 C G PVRIG Missense_Mutation p.S210R 0.17 deleterious(0.01) benign(0.102) TCGA-2G-AALP-01 8 144893229 144893229 G T SCRIB Missense_Mutation p.P374T 0.06 probably_damaging(1) TCGA-2G-AALP-01 8 81399795 81399795 C G ZBTB10 Missense_Mutation p.F250L 0.24 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-2G-AALP-01 9 140076172 140076172 G A ANAPC2 Missense_Mutation p.P477S 0.48 tolerated(0.51) benign(0.405) TCGA-2G-AALP-01 X 14868779 14868779 A G FANCB Silent p.P448P 0.33 TCGA-2G-AALP-01 X 48372918 48372918 T G PORCN Missense_Mutation p.L284R 0.25 deleterious(0) probably_damaging(0.981) TCGA-2G-AALQ-01 11 124619734 124619734 C G VSIG2 Missense_Mutation p.Q152H 0.32 tolerated(0.55) benign(0.011) TCGA-2G-AALQ-01 11 47445698 47445698 G A PSMC3 Silent p.L164L 0.15 TCGA-2G-AALQ-01 11 67925696 67925697 TG - SUV420H1 Frame_Shift_Del p.Q706Vfs*6 0.27 TCGA-2G-AALQ-01 11 68359128 68359128 G C PPP6R3 Missense_Mutation p.E624Q 0.19 tolerated(0.34) possibly_damaging(0.907) TCGA-2G-AALQ-01 13 32367149 32367149 T A RXFP2 Missense_Mutation p.N570K 0.20 deleterious(0) probably_damaging(0.986) TCGA-2G-AALQ-01 13 52952281 52952281 A T THSD1 Missense_Mutation p.D608E 0.10 tolerated(0.11) possibly_damaging(0.486) TCGA-2G-AALQ-01 14 24880356 24880356 G A NYNRIN Missense_Mutation p.R830Q 0.19 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-2G-AALQ-01 16 11990539 11990539 C A GSPT1 Silent p.P180P 0.33 TCGA-2G-AALQ-01 18 47429149 47429149 C T MYO5B Missense_Mutation p.A876T 0.19 deleterious(0.02) benign(0.031) TCGA-2G-AALQ-01 19 10217119 10217119 C T PPAN Intron 0.06 TCGA-2G-AALQ-01 2 152321277 152321277 G C RIF1 Missense_Mutation p.G1748A 0.30 tolerated(0.25) benign(0.41) TCGA-2G-AALQ-01 2 227662443 227662443 G A IRS1 Missense_Mutation p.R338C 0.44 deleterious(0) possibly_damaging(0.53) TCGA-2G-AALQ-01 3 49318243 49318243 C G USP4 Missense_Mutation p.A860P 0.30 tolerated(0.15) benign(0.06) TCGA-2G-AALQ-01 6 31740800 31740800 G T VWA7 Missense_Mutation p.L340I 0.12 tolerated(1) benign(0.001) TCGA-2G-AALQ-01 6 65596686 65596686 C G EYS Missense_Mutation p.D966H 0.39 tolerated(0.06) possibly_damaging(0.466) TCGA-2G-AALQ-01 7 129843940 129843940 T C TMEM209 Missense_Mutation p.E5G 0.05 tolerated(0.06) benign(0.099) TCGA-2G-AALQ-01 8 12886088 12886088 T C KIAA1456 3'UTR 0.33 TCGA-2G-AALQ-01 8 145741150 145741150 G A RECQL4 Missense_Mutation p.P419L 0.32 tolerated(0.09) benign(0.045) TCGA-2G-AALR-01 10 11569522 11569522 C T USP6NL Missense_Mutation p.E34K 0.25 deleterious(0.04) probably_damaging(0.917) TCGA-2G-AALR-01 11 47600657 47600657 C T NDUFS3 Missense_Mutation p.A5V 0.09 tolerated(0.27) benign(0.001) TCGA-2G-AALR-01 11 47744606 47744606 A T FNBP4 Silent p.P909P 0.07 TCGA-2G-AALR-01 12 14836167 14836167 G - GUCY2C Frame_Shift_Del p.M141* 0.16 TCGA-2G-AALR-01 12 66765536 66765536 G T GRIP1 Missense_Mutation p.L932M 0.23 tolerated(0.47) benign(0.009) TCGA-2G-AALR-01 12 68054305 68054305 A G DYRK2 3'UTR 0.22 TCGA-2G-AALR-01 12 8083900 8083900 G T SLC2A3 Silent p.R151R 0.03 TCGA-2G-AALR-01 12 8084046 8084046 A G SLC2A3 Missense_Mutation p.V102A 0.03 deleterious(0.02) benign(0.142) TCGA-2G-AALR-01 14 70496970 70496970 G C SMOC1 Missense_Mutation p.V435L 0.26 tolerated_low_confidence(0.19) benign(0.315) TCGA-2G-AALR-01 15 69747557 69747557 G T RPLP1 Missense_Mutation p.G66C 0.33 deleterious(0.03) possibly_damaging(0.681) TCGA-2G-AALR-01 16 84075679 84075679 G T SLC38A8 Silent p.G28G 0.34 TCGA-2G-AALR-01 17 40831978 40831978 C G CCR10 Missense_Mutation p.A228P 0.23 deleterious(0.03) possibly_damaging(0.707) TCGA-2G-AALR-01 17 41141537 41141537 G A RUNDC1 Missense_Mutation p.M279I 0.28 tolerated(0.13) probably_damaging(0.993) TCGA-2G-AALR-01 17 71387578 71387578 C T SDK2 Splice_Site p.X1333_splice 0.14 TCGA-2G-AALR-01 18 44682434 44682434 C T IER3IP1 3'UTR 0.26 TCGA-2G-AALR-01 18 46474772 46474772 C A SMAD7 Missense_Mutation p.D217Y 0.09 deleterious(0) probably_damaging(0.941) TCGA-2G-AALR-01 18 46474783 46474783 C G SMAD7 Missense_Mutation p.R213T 0.09 deleterious(0.02) possibly_damaging(0.787) TCGA-2G-AALR-01 19 17598309 17598309 G C SLC27A1 Silent p.L255L 0.34 TCGA-2G-AALR-01 19 41072264 41072264 C T SPTBN4 Missense_Mutation p.T2112M 0.17 deleterious(0.02) probably_damaging(0.97) TCGA-2G-AALR-01 19 50045926 50045926 G T RCN3 Missense_Mutation p.V266L 0.11 deleterious(0.01) benign(0.346) TCGA-2G-AALR-01 19 55698956 55698956 C T PTPRH Missense_Mutation p.G831S 0.39 benign(0.045) TCGA-2G-AALR-01 1 158324199 158324199 G T CD1E Missense_Mutation p.A31S 0.06 tolerated(0.5) benign(0.093) TCGA-2G-AALR-01 1 26496947 26496948 - C ZNF593 Frame_Shift_Ins p.R81Pfs*46 0.09 TCGA-2G-AALR-01 1 40713810 40713810 C G TMCO2 Missense_Mutation p.P49A 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.908) TCGA-2G-AALR-01 1 61548476 61548477 CT - NFIA Frame_Shift_Del p.C51Sfs*5 0.20 TCGA-2G-AALR-01 1 84543803 84543803 C T RP11-486G15.2 5'Flank 0.13 TCGA-2G-AALR-01 1 86959124 86959124 G A CLCA1 Missense_Mutation p.V508M 0.06 tolerated(0.05) benign(0.173) TCGA-2G-AALR-01 1 9780069 9780069 G A PIK3CD Missense_Mutation p.V445I 0.08 tolerated(0.49) benign(0.021) TCGA-2G-AALR-01 20 309673 309673 G T SOX12 3'UTR 0.45 TCGA-2G-AALR-01 20 36841586 36841586 A C KIAA1755 Missense_Mutation p.L1154R 0.44 tolerated(0.19) benign(0.015) TCGA-2G-AALR-01 20 43836447 43836447 G A SEMG1 Missense_Mutation p.G170E 0.07 tolerated(0.05) probably_damaging(1) TCGA-2G-AALR-01 20 4843482 4843482 G T SLC23A2 Missense_Mutation p.S476R 0.09 deleterious(0) probably_damaging(0.998) TCGA-2G-AALR-01 22 39148563 39148563 C T SUN2 Missense_Mutation p.G24E 0.45 deleterious(0.02) possibly_damaging(0.907) TCGA-2G-AALR-01 2 157435487 157435487 T C GPD2 Silent p.I618I 0.12 TCGA-2G-AALR-01 2 202509785 202509785 A T MPP4 3'UTR 0.42 TCGA-2G-AALR-01 2 238881845 238881846 GA - UBE2F Frame_Shift_Del p.D34Qfs*5 0.28 TCGA-2G-AALR-01 3 44762585 44762585 A G ZNF502 Silent p.E92E 0.11 TCGA-2G-AALR-01 4 100235056 100235056 G A ADH1B Silent p.P250P 0.08 TCGA-2G-AALR-01 5 112179374 112179374 A G APC Missense_Mutation p.K2695E 0.04 benign(0.06) TCGA-2G-AALR-01 5 140574644 140574644 T C PCDHB10 3'UTR 0.04 TCGA-2G-AALR-01 5 150276491 150276491 T A ZNF300 Missense_Mutation p.T120S 0.39 tolerated(0.26) benign(0.001) TCGA-2G-AALR-01 5 169805602 169805602 G A KCNMB1 3'UTR 0.31 TCGA-2G-AALR-01 5 170235654 170235654 T C GABRP Missense_Mutation p.Y244H 0.35 deleterious(0) probably_damaging(0.997) TCGA-2G-AALR-01 5 179228562 179228562 C T MGAT4B Missense_Mutation p.R154H 0.09 deleterious(0) probably_damaging(0.994) TCGA-2G-AALR-01 5 90016770 90016770 C G GPR98 Missense_Mutation p.I3214M 0.49 possibly_damaging(0.511) TCGA-2G-AALR-01 6 74135079 74135079 A C MB21D1 Silent p.L480L 0.07 TCGA-2G-AALR-01 8 30700548 30700548 C T TEX15 Missense_Mutation p.A1996T 0.24 deleterious(0.02) probably_damaging(0.961) TCGA-2G-AALR-01 9 113169776 113169776 C T SVEP1 Missense_Mutation p.D2702N 0.32 probably_damaging(0.986) TCGA-2G-AALR-01 9 130578304 130578304 G A ENG Silent p.P590P 0.38 TCGA-2G-AALR-01 9 132631164 132631164 C T USP20 Missense_Mutation p.R387C 0.32 deleterious(0.01) possibly_damaging(0.579) TCGA-2G-AALR-01 9 33307242 33307242 G C NFX1 Missense_Mutation p.G441R 0.07 deleterious(0) probably_damaging(0.999) TCGA-2G-AALR-01 9 45727973 45727973 T A FAM27A Missense_Mutation p.F60I 0.14 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-2G-AALR-01 9 45727975 45727975 T A FAM27A Missense_Mutation p.F60L 0.14 deleterious_low_confidence(0) possibly_damaging(0.691) TCGA-2G-AALR-01 9 67968313 67968313 G A ANKRD20A1 Silent p.V624V 0.27 TCGA-2G-AALR-01 X 123184103 123184103 G T STAG2 Missense_Mutation p.D321Y 0.30 deleterious(0.01) possibly_damaging(0.504) TCGA-2G-AALR-01 X 135763031 135763031 G C ARHGEF6 Missense_Mutation p.N521K 0.13 tolerated(0.21) benign(0.02) TCGA-2G-AALR-01 X 152110348 152110348 C A ZNF185 Intron 0.09 TCGA-2G-AALR-01 X 153001577 153001577 G C ABCD1 Missense_Mutation p.V365L 0.10 tolerated(0.62) benign(0.002) TCGA-2G-AALR-01 X 84349179 84349179 T G SATL1 Missense_Mutation p.K611Q 0.06 deleterious(0.01) possibly_damaging(0.598) TCGA-2G-AALS-01 11 66033608 66033608 C A KLC2 Silent p.L549L 0.16 TCGA-2G-AALS-01 12 111052124 111052124 G A TCTN1 Missense_Mutation p.G46E 0.12 tolerated(0.51) benign(0.318) TCGA-2G-AALS-01 12 18573943 18573943 T C PIK3C2G Missense_Mutation p.L754P 0.09 deleterious(0) probably_damaging(0.997) TCGA-2G-AALS-01 12 53776737 53776737 A C SP1 Missense_Mutation p.M336L 0.13 tolerated(1) benign(0.067) TCGA-2G-AALS-01 14 23893198 23893198 C T MYH7 Missense_Mutation p.C947Y 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-2G-AALS-01 15 68480296 68480296 T C PIAS1 3'UTR 0.06 TCGA-2G-AALS-01 15 90319955 90319955 G A MESP2 Missense_Mutation p.E123K 0.14 deleterious(0) probably_damaging(0.995) TCGA-2G-AALS-01 17 30374805 30374805 A G LRRC37B Silent p.P756P 0.12 TCGA-2G-AALS-01 1 151156791 151156791 A T VPS72 Splice_Site p.X188_splice 0.10 TCGA-2G-AALS-01 1 153065955 153065955 C A SPRR2E 3'UTR 0.13 TCGA-2G-AALS-01 1 39340498 39340498 T C GJA9 Missense_Mutation p.T425A 0.13 tolerated(0.27) benign(0.003) TCGA-2G-AALS-01 6 152589280 152589280 G C SYNE1 Silent p.A6242A 0.06 TCGA-2G-AALS-01 8 74464275 74464275 T G STAU2 Missense_Mutation p.E501A 0.14 tolerated(0.5) benign(0.345) TCGA-2G-AALS-01 9 19102766 19102766 A G HAUS6 5'UTR 0.11 TCGA-2G-AALT-01 14 76644260 76644261 AG - GPATCH2L Intron 0.16 TCGA-2G-AALT-01 15 24926940 24926940 C G NPAP1 3'UTR 0.16 TCGA-2G-AALT-01 17 7727167 7727167 C A DNAH2 Missense_Mutation p.A3782D 0.16 benign(0.297) TCGA-2G-AALT-01 1 26584633 26584633 G C CEP85 Splice_Site p.X346_splice 0.16 TCGA-2G-AALT-01 1 39879055 39879055 A G KIAA0754 Missense_Mutation p.T904A 0.25 benign(0.006) TCGA-2G-AALT-01 22 20759905 20759905 G A ZNF74 Silent p.G194G 0.04 TCGA-2G-AALT-01 2 128628896 128628896 G T AMMECR1L Silent p.R149R 0.27 TCGA-2G-AALT-01 2 141751584 141751585 - CGCTTC LRP1B In_Frame_Ins p.G873_S874dup 0.10 TCGA-2G-AALT-01 3 32726900 32726900 C T CNOT10 5'UTR 0.09 TCGA-2G-AALT-01 3 46945222 46945222 C T PTH1R 3'UTR 0.26 TCGA-2G-AALT-01 4 87022243 87022243 G T MAPK10 Missense_Mutation p.A231D 0.22 deleterious(0) probably_damaging(1) TCGA-2G-AALT-01 5 5462346 5462346 C T KIAA0947 Nonsense_Mutation p.Q967* 0.42 TCGA-2G-AALT-01 7 72892059 72892060 TC - BAZ1B Frame_Shift_Del p.K578Afs*3 0.13 TCGA-2G-AALW-01 10 74899094 74899094 G T ECD Nonsense_Mutation p.S498* 0.07 TCGA-2G-AALW-01 10 91178125 91178125 G C IFIT5 Missense_Mutation p.R390P 0.36 deleterious(0.04) possibly_damaging(0.764) TCGA-2G-AALW-01 11 104971361 104971361 C T CARD17 Missense_Mutation p.M51I 0.37 tolerated(0.07) possibly_damaging(0.516) TCGA-2G-AALW-01 12 130919365 130919365 C T RIMBP2 Missense_Mutation p.E706K 0.31 deleterious(0.01) possibly_damaging(0.901) TCGA-2G-AALW-01 12 49444817 49444817 G T KMT2D Missense_Mutation p.F883L 0.25 unknown(0) TCGA-2G-AALW-01 13 103520594 103520594 C G BIVM-ERCC5 Missense_Mutation p.L1315V 0.47 deleterious(0) possibly_damaging(0.452) TCGA-2G-AALW-01 13 70681838 70681838 C G KLHL1 5'UTR 0.28 TCGA-2G-AALW-01 16 2284682 2284682 G A E4F1 Silent p.R564R 0.24 TCGA-2G-AALW-01 19 36297966 36297966 T A PRODH2 Missense_Mutation p.S295C 0.22 tolerated(0.07) possibly_damaging(0.886) TCGA-2G-AALW-01 19 51453209 51453209 C A KLK5 Silent p.P79P 0.47 TCGA-2G-AALW-01 1 151131166 151131166 C T TNFAIP8L2 5'UTR 0.09 TCGA-2G-AALW-01 1 159799841 159799841 T G SLAMF8 Missense_Mutation p.F76V 0.40 deleterious(0) probably_damaging(0.996) TCGA-2G-AALW-01 1 46768994 46768994 T A LRRC41 Translation_Start_Site p.M1? 0.32 deleterious_low_confidence(0) benign(0.14) TCGA-2G-AALW-01 21 22664454 22664454 T A NCAM2 Missense_Mutation p.L171Q 0.17 deleterious(0) probably_damaging(1) TCGA-2G-AALW-01 2 131975985 131975985 G C POTEE Missense_Mutation p.E4Q 0.28 deleterious_low_confidence(0) benign(0.403) TCGA-2G-AALW-01 2 233273672 233273672 C A ALPPL2 Silent p.R345R 0.48 TCGA-2G-AALW-01 2 46603853 46603853 G A EPAS1 Missense_Mutation p.A404T 0.22 deleterious(0.01) probably_damaging(1) TCGA-2G-AALW-01 4 122831506 122831506 T C TRPC3 Missense_Mutation p.E532G 0.34 tolerated(0.11) possibly_damaging(0.833) TCGA-2G-AALW-01 4 144471183 144471186 TTGA - SMARCA5 Frame_Shift_Del p.I1008Kfs*7 0.33 TCGA-2G-AALW-01 4 158057651 158057651 A G GLRB Missense_Mutation p.K110E 0.42 deleterious(0.01) benign(0.082) TCGA-2G-AALW-01 4 56319847 56319847 A G CLOCK Missense_Mutation p.V376A 0.37 deleterious(0) probably_damaging(0.97) TCGA-2G-AALW-01 4 74719119 74719119 C G PF4V1 Missense_Mutation p.R14G 0.43 tolerated_low_confidence(0.71) unknown(0) TCGA-2G-AALW-01 5 141026222 141026222 C A FCHSD1 Missense_Mutation p.R331L 0.24 deleterious(0) possibly_damaging(0.895) TCGA-2G-AALW-01 5 141026223 141026223 G T FCHSD1 Missense_Mutation p.R331S 0.26 deleterious(0) possibly_damaging(0.895) TCGA-2G-AALW-01 6 153323668 153323668 C T MTRF1L Silent p.A51A 0.25 TCGA-2G-AALW-01 6 16327894 16327895 - TGA ATXN1 In_Frame_Ins p.Q215_Q216insH 0.55 TCGA-2G-AALW-01 6 167789494 167789494 G T TCP10 Silent p.A216A 0.37 TCGA-2G-AALW-01 6 168366528 168366541 CGCCCGGTCTGTGC - MLLT4 3'Flank 0.29 TCGA-2G-AALW-01 7 44240639 44240639 C A YKT6 5'Flank 0.50 TCGA-2G-AALW-01 7 6631350 6631350 C G C7orf26 Missense_Mutation p.S89C 0.29 deleterious(0.03) possibly_damaging(0.843) TCGA-2G-AALW-01 8 133849987 133849987 G A PHF20L1 Missense_Mutation p.V708M 0.30 deleterious(0) benign(0.162) TCGA-2G-AALW-01 8 7308297 7308297 C G SPAG11B Missense_Mutation p.V114L 0.24 tolerated(1) benign(0.036) TCGA-2G-AALW-01 9 112542649 112542649 G A PALM2-AKAP2 5'UTR 0.06 TCGA-2G-AALW-01 X 12903721 12903721 A - TLR7 Frame_Shift_Del p.T33Lfs*15 0.15 TCGA-2G-AALW-01 X 83128817 83128817 A G CYLC1 Silent p.P367P 0.46 TCGA-2G-AALX-01 14 103355943 103355943 G A TRAF3 Missense_Mutation p.S233N 0.16 tolerated(0.42) benign(0.055) TCGA-2G-AALX-01 15 89824446 89824446 G A FANCI Missense_Mutation p.S476N 0.27 tolerated(0.6) benign(0.001) TCGA-2G-AALX-01 17 37922278 37922278 G A IKZF3 Missense_Mutation p.P432L 0.31 tolerated(0.06) benign(0.097) TCGA-2G-AALX-01 19 49657880 49657880 G A HRC Silent p.A205A 0.26 TCGA-2G-AALX-01 1 163043412 163043412 G A RGS4 Silent p.E223E 0.23 TCGA-2G-AALX-01 1 19578084 19578084 G C MRTO4 5'UTR 0.21 TCGA-2G-AALX-01 20 44515336 44515336 G T SPATA25 Silent p.P168P 0.30 TCGA-2G-AALX-01 3 45943034 45943034 G A CCR9 Missense_Mutation p.A252T 0.29 deleterious(0) probably_damaging(0.98) TCGA-2G-AALX-01 6 139223666 139223666 C T ECT2L Missense_Mutation p.P873S 0.29 deleterious(0.02) benign(0.152) TCGA-2G-AALX-01 6 41556457 41556457 G T FOXP4 Missense_Mutation p.Q351H 0.07 deleterious(0) benign(0.258) TCGA-2G-AALY-01 10 120820788 120820788 T C EIF3A Missense_Mutation p.N392S 0.31 tolerated(0.11) unknown(0) TCGA-2G-AALY-01 11 103093789 103093789 G A DYNC2H1 Silent p.L3109L 0.67 TCGA-2G-AALY-01 12 113906210 113906210 C T LHX5 Splice_Site p.X133_splice 0.39 TCGA-2G-AALY-01 12 125626747 125626747 G A AACS Missense_Mutation p.R664Q 0.21 tolerated(0.16) benign(0.002) TCGA-2G-AALY-01 13 98667828 98667828 T C IPO5 Silent p.F808F 0.22 TCGA-2G-AALY-01 14 66209100 66209100 A G FUT8 Missense_Mutation p.Y567C 0.29 deleterious(0) probably_damaging(1) TCGA-2G-AALY-01 16 426323 426323 C T TMEM8A Missense_Mutation p.R346H 0.09 tolerated(0.13) benign(0.083) TCGA-2G-AALY-01 16 88783025 88783025 G A PIEZO1 Missense_Mutation p.R2290W 0.10 deleterious(0) probably_damaging(0.932) TCGA-2G-AALY-01 17 33331628 33331628 T G LIG3 3'UTR 0.14 TCGA-2G-AALY-01 18 44260338 44260338 G A ST8SIA5 Silent p.D266D 0.07 TCGA-2G-AALY-01 1 152191287 152191287 G C HRNR Missense_Mutation p.Q940E 0.35 unknown(0) TCGA-2G-AALY-01 1 22028019 22028019 T C USP48 Missense_Mutation p.D900G 0.18 tolerated(0.26) benign(0.002) TCGA-2G-AALY-01 21 27102058 27102058 G A ATP5J Silent p.A24A 0.14 TCGA-2G-AALY-01 3 141884419 141884419 G T GK5 3'UTR 0.06 TCGA-2G-AALY-01 4 6599004 6599004 C T MAN2B2 Nonsense_Mutation p.Q408* 0.26 TCGA-2G-AALY-01 6 132938975 132938975 G T TAAR2 Missense_Mutation p.L124M 0.08 tolerated(0.55) possibly_damaging(0.641) TCGA-2G-AALZ-01 12 133435706 133435707 - CAT CHFR In_Frame_Ins p.M298dup 0.07 TCGA-2G-AALZ-01 12 49420275 49420275 C T KMT2D Silent p.E5158E 0.21 TCGA-2G-AALZ-01 17 79589248 79589248 G C NPLOC4 Missense_Mutation p.N51K 0.09 tolerated(0.14) benign(0.159) TCGA-2G-AALZ-01 19 41094564 41094564 T C SHKBP1 Silent p.S457S 0.12 TCGA-2G-AALZ-01 22 46658494 46658494 G A PKDREJ Silent p.N242N 0.13 TCGA-2G-AALZ-01 4 187084616 187084616 G A FAM149A Missense_Mutation p.G291D 0.10 tolerated(0.06) benign(0.045) TCGA-2G-AALZ-01 6 32917166 32917166 G A HLA-DMA Silent p.N221N 0.17 TCGA-2G-AALZ-01 7 149510874 149510874 G T SSPO RNA 0.09 TCGA-2G-AALZ-01 9 114134001 114134001 G A KIAA0368 Missense_Mutation p.A1724V 0.07 tolerated(0.12) benign(0.283) TCGA-2G-AALZ-01 9 140150039 140150039 G A NELFB Silent p.P26P 0.08 TCGA-2G-AALZ-01 9 99797977 99797977 T C CTSV Splice_Site p.X208_splice 0.05 TCGA-2G-AALZ-01 X 107939659 107939659 A T COL4A5 3'UTR 0.08 TCGA-2G-AAM2-01 10 116050067 116050067 A G VWA2 3'Flank 0.07 TCGA-2G-AAM2-01 10 23729299 23729299 C T OTUD1 Missense_Mutation p.R305W 0.21 deleterious(0) probably_damaging(0.946) TCGA-2G-AAM2-01 10 60573945 60573945 G A BICC1 Intron 0.48 TCGA-2G-AAM2-01 12 121775139 121775139 C T ANAPC5 Silent p.K238K 0.56 TCGA-2G-AAM2-01 12 16713458 16713458 G T LMO3 Missense_Mutation p.T96K 0.06 tolerated(0.05) possibly_damaging(0.618) TCGA-2G-AAM2-01 12 52985290 52985290 G T KRT72 Silent p.A307A 0.29 TCGA-2G-AAM2-01 12 93771991 93771991 G T NUDT4 5'UTR 0.21 TCGA-2G-AAM2-01 13 110435932 110435932 G T IRS2 Nonsense_Mutation p.Y823* 0.29 TCGA-2G-AAM2-01 14 102496591 102496591 G T DYNC1H1 Silent p.V3285V 0.06 TCGA-2G-AAM2-01 14 55529374 55529374 C T MAPK1IP1L Silent p.T19T 0.38 TCGA-2G-AAM2-01 1 153233515 153233515 C T LOR Silent p.G30G 0.06 TCGA-2G-AAM2-01 1 200618324 200618324 C G DDX59 Missense_Mutation p.V449L 0.28 deleterious(0.01) benign(0.33) TCGA-2G-AAM2-01 2 27730108 27730108 G A GCKR Missense_Mutation p.R358Q 0.27 tolerated(0.63) benign(0.001) TCGA-2G-AAM2-01 3 51694124 51694124 G A RAD54L2 Missense_Mutation p.M1133I 0.23 tolerated(0.06) benign(0.009) TCGA-2G-AAM2-01 5 180052904 180052904 G T FLT4 Silent p.P462P 0.08 TCGA-2G-AAM2-01 6 109274550 109274550 G A ARMC2 Silent p.T637T 0.38 TCGA-2G-AAM2-01 6 149918640 149918640 T C KATNA1 Intron 0.27 TCGA-2G-AAM2-01 6 51612794 51612794 G A PKHD1 Missense_Mutation p.A3207V 0.28 deleterious(0) probably_damaging(0.96) TCGA-2G-AAM2-01 7 126079082 126079082 A G GRM8 3'UTR 0.26 TCGA-2G-AAM2-01 7 148863275 148863275 C G ZNF398 Missense_Mutation p.S149C 0.27 deleterious(0) probably_damaging(0.999) TCGA-2G-AAM2-01 9 33675590 33675590 G C PTENP1 RNA 0.03 TCGA-2G-AAM3-01 11 120082052 120082052 C A OAF Missense_Mutation p.P22Q 0.20 tolerated(0.29) unknown(0) TCGA-2G-AAM3-01 12 6127718 6127718 G A VWF Silent p.D1622D 0.10 TCGA-2G-AAM3-01 12 77209655 77209655 G A ZDHHC17 Silent p.L209L 0.28 TCGA-2G-AAM3-01 13 33638015 33638015 G A KL Missense_Mutation p.G911R 0.18 deleterious(0) probably_damaging(1) TCGA-2G-AAM3-01 14 91655323 91655323 C T C14orf159 Missense_Mutation p.A335V 0.20 deleterious(0) probably_damaging(0.953) TCGA-2G-AAM3-01 14 96707057 96707057 G A BDKRB2 Missense_Mutation p.R131H 0.20 deleterious(0) probably_damaging(0.983) TCGA-2G-AAM3-01 15 63935695 63935695 T C HERC1 Missense_Mutation p.I3747V 0.31 benign(0.178) TCGA-2G-AAM3-01 16 2024635 2024635 G T TBL3 Missense_Mutation p.V112L 0.06 deleterious(0.01) probably_damaging(0.989) TCGA-2G-AAM3-01 16 55363165 55363165 G T IRX6 Silent p.A425A 0.22 TCGA-2G-AAM3-01 17 29123252 29123252 C T CRLF3 Missense_Mutation p.V177I 0.22 deleterious(0.05) probably_damaging(0.99) TCGA-2G-AAM3-01 17 29162850 29162850 G T ATAD5 Missense_Mutation p.S584I 0.13 deleterious(0.01) possibly_damaging(0.474) TCGA-2G-AAM3-01 19 42474678 42474678 G A ATP1A3 Silent p.D773D 0.31 TCGA-2G-AAM3-01 1 197704897 197704897 G C DENND1B Intron 0.35 TCGA-2G-AAM3-01 1 206650044 206650044 G A IKBKE Silent p.A188A 0.05 TCGA-2G-AAM3-01 20 44441928 44441928 T A UBE2C Intron 0.26 TCGA-2G-AAM3-01 20 47588957 47588957 G C ARFGEF2 Missense_Mutation p.C507S 0.11 tolerated(0.06) benign(0.077) TCGA-2G-AAM3-01 21 44273835 44273835 C T WDR4 Silent p.L273L 0.13 TCGA-2G-AAM3-01 2 197791204 197791204 G C PGAP1 Missense_Mutation p.P46R 0.18 deleterious(0) probably_damaging(0.937) TCGA-2G-AAM3-01 2 237150242 237150242 A C ASB18 Intron 0.46 TCGA-2G-AAM3-01 2 25174379 25174379 T C DNAJC27 Silent p.K191K 0.16 TCGA-2G-AAM3-01 2 31620583 31620583 C T XDH Missense_Mutation p.R149H 0.13 deleterious(0.01) probably_damaging(1) TCGA-2G-AAM3-01 2 71607352 71607355 AACA - ZNF638 Frame_Shift_Del p.N756Kfs*3 0.24 TCGA-2G-AAM3-01 4 94006231 94006232 CG - GRID2 Frame_Shift_Del p.A111Hfs*29 0.27 TCGA-2G-AAM3-01 5 56219302 56219302 C T MIER3 Missense_Mutation p.V435I 0.14 tolerated(0.26) possibly_damaging(0.493) TCGA-2G-AAM3-01 5 78365601 78365601 G T BHMT2 5'UTR 0.10 TCGA-2G-AAM3-01 6 15501152 15501152 G A JARID2 Missense_Mutation p.D654N 0.06 deleterious(0) probably_damaging(0.992) TCGA-2G-AAM3-01 8 53477732 53477732 G A FAM150A Missense_Mutation p.P29S 0.11 deleterious(0.02) unknown(0) TCGA-2G-AAM3-01 9 135171355 135171355 G C SETX Missense_Mutation p.L2004V 0.51 deleterious(0) probably_damaging(1) TCGA-2G-AAM3-01 9 79253165 79253165 G T PRUNE2 Missense_Mutation p.A2923D 0.14 deleterious(0) probably_damaging(1) TCGA-2G-AAM4-01 10 34408663 34408663 G C PARD3 Missense_Mutation p.N1185K 0.06 deleterious_low_confidence(0.03) benign(0.115) TCGA-2G-AAM4-01 10 71905245 71905245 A - TYSND1 Frame_Shift_Del p.V367* 0.50 TCGA-2G-AAM4-01 11 2436203 2436203 C T TRPM5 Nonsense_Mutation p.W518* 0.39 TCGA-2G-AAM4-01 11 47587435 47587435 G T PTPMT1 Intron 0.45 TCGA-2G-AAM4-01 11 6415755 6415755 G T SMPD1 Missense_Mutation p.S605I 0.08 deleterious(0.03) benign(0.099) TCGA-2G-AAM4-01 11 66276583 66276584 CA T DPP3 Frame_Shift_Del p.S692Lfs*140 0.34 TCGA-2G-AAM4-01 11 831648 831648 G A EFCAB4A 3'UTR 0.57 TCGA-2G-AAM4-01 12 11506146 11506146 A G PRB1 Silent p.P164P 0.04 TCGA-2G-AAM4-01 16 1544544 1544544 G T TELO2 Missense_Mutation p.A88S 0.51 tolerated(0.17) benign(0.065) TCGA-2G-AAM4-01 16 16297454 16297454 C G ABCC6 Missense_Mutation p.A271P 0.40 tolerated(0.21) benign(0.004) TCGA-2G-AAM4-01 16 27456040 27456040 G T IL21R Nonsense_Mutation p.E229* 0.07 TCGA-2G-AAM4-01 17 41345207 41345207 C T NBR1 Silent p.T390T 0.27 TCGA-2G-AAM4-01 19 1506003 1506003 C T ADAMTSL5 3'UTR 0.44 TCGA-2G-AAM4-01 1 235345258 235345258 G A ARID4B Silent p.V992V 0.05 TCGA-2G-AAM4-01 1 33832793 33832793 C T PHC2 Silent p.V300V 0.28 TCGA-2G-AAM4-01 1 79107503 79107503 G T IFI44L 3'UTR 0.31 TCGA-2G-AAM4-01 2 11273603 11273603 C A C2orf50 Missense_Mutation p.A48D 0.35 tolerated(0.21) benign(0.01) TCGA-2G-AAM4-01 2 113479811 113479811 C T NT5DC4 Silent p.H85H 0.07 TCGA-2G-AAM4-01 2 202028813 202028813 C T CFLAR 3'UTR 0.63 TCGA-2G-AAM4-01 2 232457636 232457636 A G C2orf57 5'UTR 0.06 TCGA-2G-AAM4-01 2 40342735 40342735 G T SLC8A1 Missense_Mutation p.D860E 0.43 deleterious(0) probably_damaging(1) TCGA-2G-AAM4-01 5 149754707 149754707 C T TCOF1 Missense_Mutation p.A490V 0.32 tolerated(0.08) possibly_damaging(0.892) TCGA-2G-AAM4-01 6 135358728 135358728 T C HBS1L Intron 0.35 TCGA-2G-AAM4-01 6 15497278 15497278 G A JARID2 Missense_Mutation p.V608I 0.17 deleterious(0.02) benign(0.065) TCGA-2G-AAM4-01 6 42978951 42978951 T C PPP2R5D Missense_Mutation p.V579A 0.22 tolerated_low_confidence(0.75) benign(0.005) TCGA-2G-AAM4-01 7 128371381 128371381 A T FAM71F1 3'UTR 0.36 TCGA-2G-AAM4-01 9 34089434 34089434 T G DCAF12 Missense_Mutation p.K393N 0.23 deleterious(0.01) possibly_damaging(0.526) TCGA-2G-AAM4-01 X 119391835 119391835 A G ZBTB33 3'UTR 0.91 TCGA-2G-AAM4-01 X 130215791 130215791 C G ARHGAP36 Missense_Mutation p.S51W 0.40 deleterious(0) probably_damaging(1) TCGA-2X-A9D5-01 11 67842260 67842260 G A CHKA Missense_Mutation p.A185V 0.07 deleterious(0) probably_damaging(1) TCGA-2X-A9D5-01 12 112605270 112605270 G A HECTD4 Silent p.L3983L 0.20 TCGA-2X-A9D5-01 14 68044798 68044798 C T PLEKHH1 Missense_Mutation p.S878F 0.21 deleterious(0) probably_damaging(0.979) TCGA-2X-A9D5-01 16 15719657 15719657 G A KIAA0430 Nonsense_Mutation p.Q509* 0.36 TCGA-2X-A9D5-01 17 80377673 80377673 G A HEXDC 5'UTR 0.17 TCGA-2X-A9D5-01 18 34378389 34378389 A C TPGS2 Intron 0.33 TCGA-2X-A9D5-01 19 45920093 45920093 C A ERCC1 Missense_Mutation p.L196F 0.11 deleterious(0) probably_damaging(0.94) TCGA-2X-A9D5-01 1 150053547 150053547 T G VPS45 Missense_Mutation p.F271V 0.15 deleterious(0.01) possibly_damaging(0.85) TCGA-2X-A9D5-01 1 156563324 156563324 T C APOA1BP Missense_Mutation p.I214T 0.10 deleterious(0) possibly_damaging(0.801) TCGA-2X-A9D5-01 1 161193189 161193189 C A APOA2 Translation_Start_Site p.M1? 0.13 deleterious(0) probably_damaging(0.99) TCGA-2X-A9D5-01 20 62119705 62119705 G T EEF1A2 Silent p.G446G 0.11 TCGA-2X-A9D5-01 2 86361968 86361968 G C PTCD3 Missense_Mutation p.V546L 0.17 tolerated(0.41) benign(0.003) TCGA-2X-A9D5-01 3 47455365 47455365 A G SCAP Silent p.S1273S 0.16 TCGA-2X-A9D5-01 4 128802274 128802274 G T PLK4 5'UTR 0.22 TCGA-2X-A9D5-01 4 55599340 55599340 T G KIT Missense_Mutation p.N822K 0.40 deleterious(0) probably_damaging(1) TCGA-2X-A9D5-01 6 122744744 122744744 T C HSF2 Silent p.Y363Y 0.21 TCGA-2X-A9D5-01 6 155154403 155154403 A T SCAF8 Silent p.V1230V 0.17 TCGA-2X-A9D5-01 6 84772667 84772667 T G MRAP2 Missense_Mutation p.F61L 0.15 deleterious(0) probably_damaging(0.987) TCGA-2X-A9D5-01 8 54742088 54742088 A G ATP6V1H Silent p.A74A 0.09 TCGA-2X-A9D6-01 11 5510157 5510158 - GGC OR52D1 In_Frame_Ins p.A75dup 0.09 TCGA-2X-A9D6-01 11 62367713 62367713 C G MTA2 Missense_Mutation p.E39Q 0.29 deleterious(0) possibly_damaging(0.795) TCGA-2X-A9D6-01 11 63533328 63533328 C T C11orf95 RNA 0.09 TCGA-2X-A9D6-01 12 123107038 123107038 C G KNTC1 Missense_Mutation p.I2133M 0.09 deleterious(0.02) benign(0.426) TCGA-2X-A9D6-01 16 84456001 84456001 G A ATP2C2 Silent p.T210T 0.16 TCGA-2X-A9D6-01 17 18882003 18882003 T C FAM83G Missense_Mutation p.I326V 0.14 tolerated(1) benign(0.004) TCGA-2X-A9D6-01 17 29486050 29486051 AA - NF1 Frame_Shift_Del p.N78Ffs*28 0.12 TCGA-2X-A9D6-01 17 34895076 34895076 C T PIGW 3'Flank 0.11 TCGA-2X-A9D6-01 19 33872583 33872583 A G CEBPG 3'UTR 0.10 TCGA-2X-A9D6-01 19 59060468 59060468 T A TRIM28 Missense_Mutation p.V508D 0.20 deleterious(0) probably_damaging(0.916) TCGA-2X-A9D6-01 1 43395380 43395380 T C SLC2A1 Missense_Mutation p.M251V 0.21 tolerated(0.1) possibly_damaging(0.577) TCGA-2X-A9D6-01 22 19422334 19422334 G C MRPL40 Missense_Mutation p.K71N 0.11 deleterious(0) benign(0.366) TCGA-2X-A9D6-01 4 55599320 55599320 G T KIT Missense_Mutation p.D816Y 0.24 deleterious(0) probably_damaging(0.963) TCGA-2X-A9D6-01 6 152702176 152702176 C T SYNE1 Missense_Mutation p.D2992N 0.10 probably_damaging(0.999) TCGA-2X-A9D6-01 6 29523770 29523770 T C UBD Missense_Mutation p.T129A 0.14 tolerated(0.14) benign(0.011) TCGA-2X-A9D6-01 7 113518539 113518539 G A PPP1R3A Missense_Mutation p.P870S 0.08 tolerated(0.82) benign(0.01) TCGA-4K-AA1G-01 11 124517336 124517336 G A SIAE Silent p.I297I 0.44 TCGA-4K-AA1G-01 11 17121444 17121444 G C PIK3C2A Missense_Mutation p.Q1361E 0.30 tolerated(0.17) benign(0.265) TCGA-4K-AA1G-01 12 49937278 49937278 C A KCNH3 Missense_Mutation p.A267D 0.31 deleterious(0.01) possibly_damaging(0.821) TCGA-4K-AA1G-01 12 69140302 69140302 G C SLC35E3 Missense_Mutation p.V49L 0.25 tolerated(0.5) benign(0.002) TCGA-4K-AA1G-01 12 75716837 75716837 C G CAPS2 Missense_Mutation p.A89P 0.18 tolerated(0.07) benign(0.327) TCGA-4K-AA1G-01 14 23374412 23374412 G T RBM23 Missense_Mutation p.S206Y 0.18 deleterious(0) probably_damaging(0.971) TCGA-4K-AA1G-01 15 100942813 100942813 G C CERS3 3'UTR 0.10 TCGA-4K-AA1G-01 16 30974776 30974776 T C SETD1A Silent p.Y180Y 0.20 TCGA-4K-AA1G-01 19 11210902 11210902 G T LDLR Missense_Mutation p.G24V 0.11 tolerated(0.24) benign(0.118) TCGA-4K-AA1G-01 1 11709267 11709267 G C FBXO2 Missense_Mutation p.S211R 0.19 tolerated(0.36) benign(0.045) TCGA-4K-AA1G-01 1 207941164 207941164 C T CD46 Silent p.A314A 0.26 TCGA-4K-AA1G-01 1 87797776 87797776 C T LMO4 Silent p.C26C 0.06 TCGA-4K-AA1G-01 2 26596369 26596369 A G EPT1 Missense_Mutation p.T149A 0.24 tolerated(0.5) benign(0.055) TCGA-4K-AA1G-01 3 32578558 32578558 G C DYNC1LI1 Nonsense_Mutation p.Y259* 0.22 TCGA-4K-AA1G-01 4 55599320 55599320 G C KIT Missense_Mutation p.D816H 0.70 deleterious(0.01) benign(0.292) TCGA-4K-AA1G-01 8 131792613 131792614 - T ADCY8 3'UTR 0.22 TCGA-4K-AA1G-01 8 28304723 28304723 G A FBXO16 Nonsense_Mutation p.Q270* 0.21 TCGA-4K-AA1G-01 8 81426189 81426189 G A ZBTB10 Missense_Mutation p.V636M 0.18 tolerated(0.2) benign(0.004) TCGA-4K-AA1G-01 X 100807859 100807859 G T ARMCX1 5'UTR 0.17 TCGA-4K-AA1H-01 11 62601760 62601760 C A WDR74 Missense_Mutation p.D255Y 0.07 deleterious(0) probably_damaging(0.967) TCGA-4K-AA1H-01 12 25398285 25398285 C T KRAS Missense_Mutation p.G12S 0.11 deleterious(0.03) possibly_damaging(0.644) TCGA-4K-AA1H-01 15 59192108 59192108 T C SLTM Silent p.Q206Q 0.08 TCGA-4K-AA1H-01 1 144931745 144931745 C T PDE4DIP Intron 0.12 TCGA-4K-AA1H-01 1 226019577 226019577 T C EPHX1 Missense_Mutation p.I94T 0.06 deleterious(0.02) benign(0.035) TCGA-4K-AA1H-01 21 46842484 46842484 G T COL18A1-AS1 RNA 0.11 TCGA-4K-AA1H-01 2 55138179 55138179 G A EML6 Silent p.E1166E 0.06 TCGA-4K-AA1H-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.12 TCGA-4K-AA1H-01 8 8176578 8176578 G A SGK223 Missense_Mutation p.R1103W 0.09 probably_damaging(0.91) TCGA-4K-AA1I-01 10 74034751 74034751 C T DDIT4 Silent p.S168S 0.10 TCGA-4K-AA1I-01 12 1291122 1291122 G C ERC1 Missense_Mutation p.R636T 0.07 deleterious(0.01) probably_damaging(0.953) TCGA-4K-AA1I-01 14 93398975 93398975 C T CHGA Missense_Mutation p.R357W 0.14 deleterious(0) probably_damaging(0.934) TCGA-4K-AA1I-01 15 52671830 52671830 G A MYO5A Silent p.L734L 0.06 TCGA-4K-AA1I-01 15 73044820 73044820 T C ADPGK Silent p.V451V 0.09 TCGA-4K-AA1I-01 1 84880280 84880280 G C DNASE2B Missense_Mutation p.R272T 0.12 tolerated(0.58) benign(0.014) TCGA-4K-AA1I-01 4 71201486 71201486 C G CABS1 Missense_Mutation p.L244V 0.20 deleterious(0.03) possibly_damaging(0.899) TCGA-4K-AA1I-01 6 160958956 160958956 G A LPA Silent p.L1925L 0.05 TCGA-4K-AA1I-01 6 37664628 37664628 C T MDGA1 5'UTR 0.18 TCGA-4K-AA1I-01 6 41126334 41126334 C A TREM2 3'UTR 0.11 TCGA-4K-AA1I-01 6 44268395 44268395 G A AARS2 Silent p.H949H 0.15 TCGA-4K-AA1I-01 8 110509211 110509211 A G PKHD1L1 Missense_Mutation p.Y3464C 0.05 deleterious(0) probably_damaging(0.994) TCGA-4K-AA1I-01 9 104187142 104187142 A C ALDOB Missense_Mutation p.F328V 0.17 deleterious(0.02) probably_damaging(0.963) TCGA-4K-AA1I-01 9 82187576 82187576 G A TLE4 5'UTR 0.18 TCGA-4K-AA1I-01 X 115305730 115305730 G A AGTR2 3'UTR 0.20 TCGA-4K-AAAL-01 16 46723055 46723055 C A VPS35 5'UTR 0.16 TCGA-4K-AAAL-01 16 58011892 58011892 A C TEPP Missense_Mutation p.K113Q 0.07 tolerated(0.37) benign(0.371) TCGA-4K-AAAL-01 16 67165195 67165195 G C C16orf70 Missense_Mutation p.E80Q 0.11 deleterious(0.04) probably_damaging(0.967) TCGA-4K-AAAL-01 16 70415679 70415679 C G ST3GAL2 Missense_Mutation p.K322N 0.15 possibly_damaging(0.694) TCGA-4K-AAAL-01 16 80718479 80718479 C T CDYL2 Missense_Mutation p.G191D 0.07 tolerated(0.06) benign(0.013) TCGA-4K-AAAL-01 17 28887161 28887161 T C TBC1D29 Silent p.G13G 0.23 TCGA-4K-AAAL-01 19 35790581 35790581 G T MAG Silent p.L180L 0.14 TCGA-4K-AAAL-01 19 49110410 49110410 C T SPACA4 Missense_Mutation p.P59S 0.09 tolerated(0.39) benign(0.087) TCGA-4K-AAAL-01 19 50918215 50918215 C T POLD1 Silent p.V844V 0.12 TCGA-4K-AAAL-01 1 36348875 36348875 C G AGO1 5'UTR 0.06 TCGA-4K-AAAL-01 1 45232917 45232917 T C KIF2C 3'UTR 0.52 TCGA-4K-AAAL-01 20 2464083 2464083 G A ZNF343 Silent p.L508L 0.17 TCGA-4K-AAAL-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.07 TCGA-4K-AAAL-01 3 113115371 113115371 G A WDR52 Silent p.A591A 0.36 TCGA-4K-AAAL-01 4 125590598 125590598 C G ANKRD50 Missense_Mutation p.K1278N 0.21 tolerated_low_confidence(0.4) benign(0.374) TCGA-4K-AAAL-01 4 80328968 80328968 T A GK2 Missense_Mutation p.K129N 0.15 tolerated(0.18) benign(0.098) TCGA-4K-AAAL-01 5 128984530 128984530 A G ADAMTS19 Silent p.K675K 0.14 TCGA-4K-AAAL-01 7 100320334 100320334 G A EPO Silent p.S98S 0.08 TCGA-4K-AAAL-01 7 73111840 73111840 C T WBSCR22 Missense_Mutation p.T249I 0.21 tolerated(0.19) benign(0.008) TCGA-4K-AAAL-01 7 95822404 95822406 ATG - SLC25A13 In_Frame_Del p.I186del 0.08 TCGA-4K-AAAL-01 8 22582428 22582428 G A PEBP4 Missense_Mutation p.R149C 0.12 deleterious(0) probably_damaging(1) TCGA-4K-AAAL-01 9 138415793 138415793 G T LCN1 Missense_Mutation p.E120D 0.33 tolerated(0.08) benign(0.019) TCGA-4K-AAAL-01 X 66766356 66766356 T C AR Silent p.G456G 0.16 TCGA-S6-A8JW-01 12 25380276 25380276 T C KRAS Missense_Mutation p.Q61R 0.29 tolerated(0.06) benign(0.374) TCGA-S6-A8JW-01 12 5026437 5026437 G A KCNA1 3'UTR 0.06 TCGA-S6-A8JW-01 17 36485919 36485921 TCT - GPR179 In_Frame_Del p.E1177del 0.12 TCGA-S6-A8JW-01 19 45575017 45575017 C G ZNF296 Missense_Mutation p.A424P 0.24 deleterious(0) probably_damaging(0.948) TCGA-S6-A8JW-01 19 50149824 50149824 G A SCAF1 Silent p.V101V 0.24 TCGA-S6-A8JW-01 21 37833709 37833709 G A CLDN14 Silent p.C95C 0.07 TCGA-S6-A8JW-01 22 37540125 37540125 C T IL2RB Missense_Mutation p.G30S 0.34 tolerated(0.19) possibly_damaging(0.557) TCGA-S6-A8JW-01 2 27455982 27455982 C G CAD Missense_Mutation p.L989V 0.27 deleterious(0) probably_damaging(1) TCGA-S6-A8JW-01 2 9661415 9661415 T G ADAM17 Missense_Mutation p.K292Q 0.29 tolerated(0.44) benign(0) TCGA-S6-A8JW-01 3 131220418 131220419 AC - MRPL3 Frame_Shift_Del p.C78Sfs*5 0.24 TCGA-S6-A8JW-01 6 64423074 64423074 C T PHF3 Nonsense_Mutation p.Q1864* 0.21 TCGA-S6-A8JX-01 12 54367505 54367505 C T HOXC11 Silent p.C160C 0.23 TCGA-S6-A8JX-01 17 40720884 40720884 G T MLX Missense_Mutation p.A121S 0.23 tolerated(1) benign(0) TCGA-S6-A8JX-01 17 61619790 61619790 C T KCNH6 Missense_Mutation p.R715W 0.16 deleterious(0) probably_damaging(0.997) TCGA-S6-A8JX-01 18 61064290 61064290 G T VPS4B Missense_Mutation p.Q357K 0.07 deleterious(0.03) probably_damaging(0.957) TCGA-S6-A8JX-01 1 21205927 21205927 A G EIF4G3 Silent p.T787T 0.32 TCGA-S6-A8JX-01 1 34192157 34192157 G T CSMD2 Missense_Mutation p.T793N 0.13 tolerated(0.1) possibly_damaging(0.875) TCGA-S6-A8JX-01 4 74702735 74702735 C G CXCL6 Missense_Mutation p.T55R 0.51 deleterious(0) possibly_damaging(0.775) TCGA-S6-A8JX-01 5 143853691 143853691 G T KCTD16 3'UTR 0.06 TCGA-S6-A8JX-01 X 70679039 70679039 G T TAF1 Intron 0.09 TCGA-S6-A8JY-01 10 102753124 102753124 C G C10orf2 Missense_Mutation p.L638V 0.34 tolerated(0.37) benign(0.059) TCGA-S6-A8JY-01 12 113617043 113617043 G A DDX54 Missense_Mutation p.R157W 0.28 deleterious(0) probably_damaging(0.977) TCGA-S6-A8JY-01 15 42003218 42003218 T G MGA Missense_Mutation p.L919V 0.23 tolerated(0.12) possibly_damaging(0.769) TCGA-S6-A8JY-01 19 1612333 1612333 A C TCF3 Intron 0.27 TCGA-S6-A8JY-01 19 40370221 40370221 G T FCGBP Missense_Mutation p.H4149N 0.37 benign(0.322) TCGA-S6-A8JY-01 19 58490600 58490600 G C ZNF606 Missense_Mutation p.P483R 0.14 deleterious(0) probably_damaging(1) TCGA-S6-A8JY-01 1 160254906 160254906 G T PEX19 Silent p.A3A 0.26 TCGA-S6-A8JY-01 1 7870564 7870564 G C PER3 Missense_Mutation p.E479Q 0.32 tolerated(0.08) benign(0.001) TCGA-S6-A8JY-01 22 50438258 50438258 C T IL17REL Missense_Mutation p.R158Q 0.17 tolerated(0.38) benign(0.002) TCGA-S6-A8JY-01 3 124909295 124909295 G C SLC12A8 Missense_Mutation p.T41S 0.24 deleterious(0) possibly_damaging(0.887) TCGA-S6-A8JY-01 6 12121882 12121883 TA - HIVEP1 Frame_Shift_Del p.N619* 0.21 TCGA-S6-A8JY-01 6 13588626 13588626 G T SIRT5 Missense_Mutation p.G60V 0.27 deleterious(0) probably_damaging(1) TCGA-S6-A8JY-01 6 25777039 25777039 G A SLC17A4 Splice_Site p.X374_splice 0.29 TCGA-S6-A8JY-01 6 96654378 96654378 G A FUT9 3'UTR 0.05 TCGA-S6-A8JY-01 X 100653456 100653456 G C GLA Missense_Mutation p.R301G 0.08 deleterious(0) probably_damaging(1) TCGA-S6-A8JY-01 X 12904184 12904184 G T TLR7 Missense_Mutation p.R186L 0.43 tolerated(0.09) probably_damaging(0.995) TCGA-S6-A8JY-01 X 135572573 135572573 T G BRS3 Missense_Mutation p.L239W 0.32 deleterious(0.02) probably_damaging(1) TCGA-S6-A8JY-01 X 54584946 54584946 C T GNL3L Silent p.R508R 0.31 TCGA-SB-A6J6-01 10 69571358 69571358 C T DNAJC12 Missense_Mutation p.R74H 0.11 tolerated(0.12) benign(0.008) TCGA-SB-A6J6-01 12 106641269 106641269 C T CKAP4 Missense_Mutation p.A121T 0.18 deleterious(0.01) unknown(0) TCGA-SB-A6J6-01 13 46288213 46288213 C T SPERT Silent p.D351D 0.12 TCGA-SB-A6J6-01 14 24878059 24878059 G A NYNRIN Silent p.G353G 0.17 TCGA-SB-A6J6-01 14 38060906 38060906 G T FOXA1 Missense_Mutation p.S361R 0.18 tolerated(0.29) benign(0.052) TCGA-SB-A6J6-01 14 81969081 81969081 G C SEL1L Missense_Mutation p.S254C 0.10 deleterious(0.02) probably_damaging(0.971) TCGA-SB-A6J6-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.08 TCGA-SB-A6J6-01 17 42989136 42989136 G T GFAP Silent p.R270R 0.08 TCGA-SB-A6J6-01 17 71193472 71193472 C T COG1 Missense_Mutation p.P284S 0.32 tolerated(0.11) benign(0.097) TCGA-SB-A6J6-01 19 38385792 38385792 A G WDR87 Missense_Mutation p.L145P 0.10 probably_damaging(0.999) TCGA-SB-A6J6-01 1 155172077 155172077 A G THBS3 Missense_Mutation p.I358T 0.16 deleterious(0.03) benign(0.018) TCGA-SB-A6J6-01 2 170403079 170403079 G A FASTKD1 Silent p.N450N 0.12 TCGA-SB-A6J6-01 2 171687483 171687483 G A GAD1 Missense_Mutation p.E110K 0.09 tolerated(0.25) benign(0.016) TCGA-SB-A6J6-01 2 219536860 219536860 A C STK36 5'UTR 0.11 TCGA-SB-A6J6-01 2 220467428 220467428 G A STK11IP Missense_Mutation p.R194H 0.07 tolerated(0.31) benign(0.023) TCGA-SB-A6J6-01 2 32718725 32718725 C G BIRC6 Nonsense_Mutation p.S2820* 0.10 TCGA-SB-A6J6-01 4 147560512 147560512 A T POU4F2 Missense_Mutation p.S74C 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-SB-A6J6-01 4 71659590 71659590 C T RUFY3 Nonsense_Mutation p.Q476* 0.10 TCGA-SB-A6J6-01 5 140032730 140032730 G A IK Splice_Site p.X135_splice 0.12 TCGA-SB-A6J6-01 6 69723993 69723993 C A BAI3 Missense_Mutation p.Q665K 0.21 deleterious(0.01) benign(0.339) TCGA-SB-A6J6-01 7 90585027 90585027 A T CDK14 Missense_Mutation p.K263I 0.11 deleterious(0.01) possibly_damaging(0.868) TCGA-SB-A6J6-01 7 92164020 92164021 TT - RBM48 Frame_Shift_Del p.L252Efs*20 0.08 TCGA-SB-A6J6-01 9 5080316 5080316 G T JAK2 Missense_Mutation p.G740V 0.21 deleterious(0) probably_damaging(1) TCGA-SB-A76C-01 12 113770646 113770646 C T SLC8B1 Missense_Mutation p.S13N 0.29 tolerated_low_confidence(0.18) benign(0.035) TCGA-SB-A76C-01 15 44066684 44066684 C T ELL3 Missense_Mutation p.D286N 0.23 deleterious(0.01) probably_damaging(1) TCGA-SB-A76C-01 16 31202397 31202398 AG - FUS Frame_Shift_Del p.G504Wfs*12 0.17 TCGA-SB-A76C-01 19 52394804 52394804 C T ZNF649 Silent p.E195E 0.23 TCGA-SB-A76C-01 19 52658148 52658148 G C ZNF836 Missense_Mutation p.L930V 0.23 tolerated_low_confidence(0.63) benign(0) TCGA-SB-A76C-01 1 115258747 115258747 C T NRAS Missense_Mutation p.G12D 0.17 deleterious(0) possibly_damaging(0.726) TCGA-SB-A76C-01 1 196884256 196884256 C A CFHR4 Missense_Mutation p.P509T 0.14 deleterious(0) possibly_damaging(0.784) TCGA-SB-A76C-01 22 37326718 37326718 G A CSF2RB Silent p.E286E 0.45 TCGA-SB-A76C-01 5 140208298 140208298 C T PCDHA6 Missense_Mutation p.H208Y 0.20 tolerated_low_confidence(0.08) benign(0.044) TCGA-SB-A76C-01 6 26385530 26385530 C A BTN2A2 Missense_Mutation p.R128S 0.19 tolerated(0.34) benign(0.061) TCGA-SB-A76C-01 6 42974822 42974822 G T PPP2R5D Missense_Mutation p.A166S 0.05 tolerated(0.34) benign(0.034) TCGA-SB-A76C-01 6 74171583 74171583 C G MTO1 Missense_Mutation p.F2L 0.22 tolerated_low_confidence(0.19) benign(0.014) TCGA-SB-A76C-01 8 92096281 92096284 CAGG - OTUD6B Frame_Shift_Del p.A277Ifs*6 0.13 TCGA-SB-A76C-01 9 78973480 78973480 A G PCSK5 Missense_Mutation p.K1742R 0.05 tolerated(0.12) benign(0.008) TCGA-SB-A76C-01 9 95094481 95094481 A G CENPP Missense_Mutation p.N46S 0.16 tolerated(0.06) benign(0.001) TCGA-SN-A6IS-01 11 65545364 65545364 G T AP5B1 Missense_Mutation p.A867E 0.05 deleterious(0.04) possibly_damaging(0.551) TCGA-SN-A6IS-01 11 93463597 93463597 T A KIAA1731 3'Flank 0.31 TCGA-SN-A6IS-01 12 105501526 105501526 C T KIAA1033 5'UTR 0.15 TCGA-SN-A6IS-01 12 72023401 72023405 TTTCA - ZFC3H1 Frame_Shift_Del p.N1270Kfs*2 0.15 TCGA-SN-A6IS-01 14 99959052 99959052 C G CCNK Missense_Mutation p.T13S 0.16 tolerated(0.19) benign(0.014) TCGA-SN-A6IS-01 17 39525812 39525812 T C KRT33B Missense_Mutation p.N64S 0.26 deleterious(0) possibly_damaging(0.806) TCGA-SN-A6IS-01 19 1496326 1496326 G T REEP6 Missense_Mutation p.G131W 0.10 deleterious(0) probably_damaging(1) TCGA-SN-A6IS-01 1 153633936 153633936 A G SNAPIN 3'UTR 0.33 TCGA-SN-A6IS-01 1 169101270 169101270 T G ATP1B1 3'UTR 0.40 TCGA-SN-A6IS-01 20 62221817 62221817 C T GMEB2 Silent p.P406P 0.22 TCGA-SN-A6IS-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.20 TCGA-SN-A6IS-01 22 36716924 36716924 G A MYH9 Missense_Mutation p.R263C 0.17 probably_damaging(0.997) TCGA-SN-A6IS-01 2 11355177 11355178 AG - ROCK2 Frame_Shift_Del p.S575* 0.18 TCGA-SN-A6IS-01 3 121448824 121448824 G A GOLGB1 Missense_Mutation p.T46I 0.21 benign(0.024) TCGA-SN-A6IS-01 3 81539395 81539396 AA - GBE1 3'UTR 0.21 TCGA-SN-A6IS-01 4 3237461 3237461 G T HTT Missense_Mutation p.R2914L 0.15 probably_damaging(0.999) TCGA-SN-A6IS-01 7 149153033 149153033 G A ZNF777 Silent p.L27L 0.21 TCGA-SN-A6IS-01 7 99084226 99084227 GT - ZNF789 Frame_Shift_Del p.C132* 0.12 TCGA-SN-A6IS-01 9 139907669 139907669 C T ABCA2 Missense_Mutation p.G1551D 0.14 tolerated(0.28) benign(0.016) TCGA-SN-A84W-01 10 75519799 75519799 G T SEC24C Missense_Mutation p.A169S 0.07 tolerated(0.44) benign(0.01) TCGA-SN-A84W-01 11 66436560 66436560 G A RBM4B Silent p.Y205Y 0.42 TCGA-SN-A84W-01 12 101763603 101763603 G A UTP20 Silent p.L2163L 0.06 TCGA-SN-A84W-01 15 90320161 90320161 G A MESP2 Silent p.G191G 0.42 TCGA-SN-A84W-01 17 27441062 27441063 CA - MYO18A Frame_Shift_Del p.V855Gfs*39 0.36 TCGA-SN-A84W-01 17 27893554 27893554 C T ABHD15 Missense_Mutation p.C144Y 0.29 tolerated(1) benign(0.011) TCGA-SN-A84W-01 17 3144302 3144302 C T OR1D4 RNA 0.29 TCGA-SN-A84W-01 17 79517782 79517782 A G C17orf70 Silent p.P246P 0.06 TCGA-SN-A84W-01 17 8404192 8404193 GT - MYH10 Frame_Shift_Del p.H1232Rfs*32 0.29 TCGA-SN-A84W-01 1 184706178 184706178 T C EDEM3 Missense_Mutation p.D109G 0.31 deleterious(0) possibly_damaging(0.764) TCGA-SN-A84W-01 1 186151356 186151356 G A HMCN1 Missense_Mutation p.G5451R 0.28 probably_damaging(0.998) TCGA-SN-A84W-01 1 204159651 204159651 C T KISS1 Silent p.A126A 0.06 TCGA-SN-A84W-01 1 211751852 211751852 G A SLC30A1 Silent p.L35L 0.32 TCGA-SN-A84W-01 1 29359661 29359661 C T EPB41 Silent p.Y423Y 0.36 TCGA-SN-A84W-01 2 136633830 136633830 C T MCM6 Missense_Mutation p.E36K 0.30 tolerated(0.09) benign(0.277) TCGA-SN-A84W-01 2 98264520 98264520 C T COX5B Silent p.C113C 0.26 TCGA-SN-A84W-01 3 101371663 101371663 T G ZBTB11 Missense_Mutation p.Y810S 0.30 tolerated(0.1) probably_damaging(1) TCGA-SN-A84W-01 3 142297604 142297604 G C ATR 5'UTR 0.24 TCGA-SN-A84W-01 3 164777693 164777693 T C SI Silent p.P381P 0.33 TCGA-SN-A84W-01 4 148802993 148802993 A G ARHGAP10 Missense_Mutation p.D315G 0.06 tolerated(0.24) probably_damaging(0.968) TCGA-SN-A84W-01 6 31922436 31922437 TC - NELFE Frame_Shift_Del p.D213Qfs*41 0.15 TCGA-SN-A84W-01 7 100203305 100203305 G A PCOLCE Missense_Mutation p.A199T 0.28 tolerated(0.07) benign(0.005) TCGA-SN-A84W-01 7 19184670 19184670 C T FERD3L Missense_Mutation p.A106T 0.35 deleterious(0) probably_damaging(1) TCGA-SN-A84W-01 X 153174596 153174596 G T ARHGAP4 Silent p.A885A 0.07 TCGA-SN-A84W-01 X 69255604 69255604 C T EDA 3'UTR 0.26 TCGA-SN-A84X-01 10 6157491 6157491 G A RBM17 Missense_Mutation p.R393K 0.21 tolerated(0.43) benign(0.37) TCGA-SN-A84X-01 11 1261503 1261503 G A MUC5B Missense_Mutation p.G1290R 0.25 unknown(0) TCGA-SN-A84X-01 12 57112396 57112396 G A NACA Intron 0.11 TCGA-SN-A84X-01 12 94976045 94976045 C T TMCC3 Silent p.E116E 0.18 TCGA-SN-A84X-01 14 64989758 64989758 G A ZBTB1 Silent p.R512R 0.35 TCGA-SN-A84X-01 14 91701361 91701363 TCA - GPR68 In_Frame_Del p.M11del 0.08 TCGA-SN-A84X-01 16 24965936 24965936 G A ARHGAP17 Silent p.G280G 0.37 TCGA-SN-A84X-01 16 31371099 31371099 T A ITGAX Missense_Mutation p.M170K 0.28 deleterious(0) probably_damaging(0.998) TCGA-SN-A84X-01 16 67911669 67911669 T C EDC4 Missense_Mutation p.L272P 0.21 deleterious(0) possibly_damaging(0.851) TCGA-SN-A84X-01 17 66339927 66339927 T G ARSG Missense_Mutation p.I134R 0.19 deleterious(0) benign(0.167) TCGA-SN-A84X-01 19 15233609 15233609 A C ILVBL Missense_Mutation p.V204G 0.26 deleterious(0) probably_damaging(0.989) TCGA-SN-A84X-01 1 152276832 152276832 G C FLG Silent p.S3510S 0.06 TCGA-SN-A84X-01 1 161200952 161200952 C T NR1I3 Missense_Mutation p.E260K 0.24 tolerated(0.26) benign(0.019) TCGA-SN-A84X-01 20 3739195 3739195 G C C20orf27 Missense_Mutation p.S75R 0.24 tolerated(0.08) possibly_damaging(0.586) TCGA-SN-A84X-01 2 166514444 166514444 G A CSRNP3 Missense_Mutation p.E108K 0.38 deleterious(0) probably_damaging(0.992) TCGA-SN-A84X-01 2 203591019 203591019 G A FAM117B Missense_Mutation p.R298Q 0.41 tolerated(0.05) probably_damaging(0.922) TCGA-SN-A84X-01 2 27804669 27804669 A T C2orf16 Missense_Mutation p.S1744C 0.31 tolerated(0.1) probably_damaging(0.994) TCGA-SN-A84X-01 3 45942703 45942703 C T CCR9 Silent p.S141S 0.14 TCGA-SN-A84X-01 4 164392902 164392902 G T TKTL2 3'UTR 0.16 TCGA-SN-A84X-01 4 39864513 39864513 T C PDS5A Missense_Mutation p.I983V 0.08 tolerated(0.58) benign(0.193) TCGA-SN-A84X-01 5 131310650 131310650 G A ACSL6 Missense_Mutation p.P335L 0.31 tolerated(0.39) benign(0.076) TCGA-SN-A84X-01 5 140604522 140604522 C A PCDHB14 Missense_Mutation p.T482N 0.21 deleterious_low_confidence(0.01) benign(0.371) TCGA-SN-A84X-01 5 79465352 79465352 C T SERINC5 Missense_Mutation p.S190N 0.36 tolerated(0.23) benign(0.158) TCGA-SN-A84X-01 7 20824970 20824970 C T SP8 Missense_Mutation p.G156S 0.09 tolerated(0.76) benign(0.007) TCGA-SN-A84X-01 8 142151473 142151473 C T DENND3 Intron 0.07 TCGA-SN-A84X-01 8 38871495 38871495 C G ADAM9 Missense_Mutation p.P89R 0.16 deleterious(0.01) probably_damaging(0.991) TCGA-SN-A84Y-01 10 102587538 102587538 A C PAX2 3'UTR 0.27 TCGA-SN-A84Y-01 10 95718362 95718365 TTTC - PIPSL RNA 0.67 TCGA-SN-A84Y-01 11 57573388 57573392 TATCA - CTNND1 Frame_Shift_Del p.Y588Sfs*38 0.38 TCGA-SN-A84Y-01 12 130184692 130184692 C G TMEM132D Missense_Mutation p.G211R 0.17 deleterious(0.02) benign(0.411) TCGA-SN-A84Y-01 12 20522511 20522511 C A PDE3A Missense_Mutation p.A98E 0.05 tolerated_low_confidence(0.39) benign(0.001) TCGA-SN-A84Y-01 12 57898052 57898052 G C MARS Silent p.S446S 0.09 TCGA-SN-A84Y-01 15 101968168 101968168 G A PCSK6 Missense_Mutation p.A250V 0.06 deleterious(0) probably_damaging(0.998) TCGA-SN-A84Y-01 16 30748991 30748991 C T SRCAP Missense_Mutation p.P2544S 0.26 unknown(0) TCGA-SN-A84Y-01 17 42744013 42744016 CTAA - C17orf104 Frame_Shift_Del p.N246Vfs*34 0.25 TCGA-SN-A84Y-01 19 10260600 10260600 C A DNMT1 Silent p.A770A 0.41 TCGA-SN-A84Y-01 19 19466173 19466173 C T MAU2 Silent p.C580C 0.08 TCGA-SN-A84Y-01 1 21133864 21133864 G C EIF4G3 Missense_Mutation p.T1575R 0.13 deleterious(0.03) probably_damaging(0.993) TCGA-SN-A84Y-01 22 21357115 21357115 A G AC002472.1 3'Flank 0.17 TCGA-SN-A84Y-01 22 22293688 22293688 G A PPM1F Intron 0.33 TCGA-SN-A84Y-01 2 133175132 133175132 G T GPR39 Missense_Mutation p.A173S 0.06 deleterious(0.02) possibly_damaging(0.88) TCGA-SN-A84Y-01 3 53905293 53905293 C G ACTR8 Silent p.L511L 0.07 TCGA-SN-A84Y-01 4 183245169 183245169 G T TENM3 5'UTR 0.09 TCGA-SN-A84Y-01 4 76489751 76489751 G T C4orf26 3'UTR 0.07 TCGA-SN-A84Y-01 5 79616895 79616895 C G SPZ1 Silent p.V287V 0.27 TCGA-SN-A84Y-01 7 82582694 82582694 T G PCLO Missense_Mutation p.K2525N 0.28 unknown(0) TCGA-SN-A84Y-01 9 12693947 12693947 A G TYRP1 5'UTR 0.33 TCGA-SO-A8JP-01 10 126715930 126715930 G T CTBP2 Missense_Mutation p.S133R 0.10 deleterious_low_confidence(0) benign(0.051) TCGA-SO-A8JP-01 10 127526837 127526837 G A DHX32 Silent p.F667F 0.37 TCGA-SO-A8JP-01 10 31137859 31137859 C T ZNF438 Missense_Mutation p.S492N 0.15 tolerated(0.18) benign(0.006) TCGA-SO-A8JP-01 11 111789694 111789694 G T C11orf52 5'UTR 0.05 TCGA-SO-A8JP-01 12 129190461 129190461 G A TMEM132C Missense_Mutation p.S983N 0.07 tolerated(1) benign(0.002) TCGA-SO-A8JP-01 12 130184606 130184606 G A TMEM132D Silent p.C239C 0.05 TCGA-SO-A8JP-01 12 18891950 18891950 G A CAPZA3 Missense_Mutation p.E250K 0.30 tolerated(0.25) benign(0.446) TCGA-SO-A8JP-01 13 42293575 42293575 T A VWA8 Intron 0.35 TCGA-SO-A8JP-01 14 105609508 105609508 C T JAG2 Splice_Site p.X1081_splice 0.45 TCGA-SO-A8JP-01 14 52978069 52978069 A T TXNDC16 Missense_Mutation p.H215Q 0.31 deleterious(0.04) benign(0.196) TCGA-SO-A8JP-01 14 91252656 91252656 A G TTC7B Silent p.L46L 0.18 TCGA-SO-A8JP-01 16 10534303 10534303 G A ATF7IP2 Missense_Mutation p.S393N 0.07 tolerated(0.17) benign(0.021) TCGA-SO-A8JP-01 16 14973920 14973920 G C NOMO1 Missense_Mutation p.E936Q 0.33 tolerated(0.1) benign(0.345) TCGA-SO-A8JP-01 16 84212696 84212698 TGG - TAF1C In_Frame_Del p.A820_K821delinsE 0.27 TCGA-SO-A8JP-01 17 80478070 80478070 G C FOXK2 Missense_Mutation p.Q102H 0.22 tolerated_low_confidence(0.14) possibly_damaging(0.5) TCGA-SO-A8JP-01 19 51518067 51518067 G T KLK10 Missense_Mutation p.R274S 0.05 tolerated(0.09) benign(0.011) TCGA-SO-A8JP-01 19 9801772 9801772 A T ZNF812 Missense_Mutation p.L136H 0.33 tolerated(0.5) probably_damaging(0.999) TCGA-SO-A8JP-01 1 157666768 157666768 G A FCRL3 Intron 0.27 TCGA-SO-A8JP-01 2 162865128 162865128 C T DPP4 Missense_Mutation p.S644N 0.14 deleterious(0) probably_damaging(0.926) TCGA-SO-A8JP-01 2 219603651 219603651 C T TTLL4 Missense_Mutation p.R418C 0.04 tolerated(0.07) benign(0.064) TCGA-SO-A8JP-01 2 225370731 225370731 C A CUL3 Missense_Mutation p.R383M 0.42 deleterious(0) probably_damaging(0.928) TCGA-SO-A8JP-01 3 132224196 132224196 C G DNAJC13 Missense_Mutation p.N1645K 0.41 deleterious(0.01) possibly_damaging(0.758) TCGA-SO-A8JP-01 5 139741434 139741434 C A SLC4A9 Missense_Mutation p.P207T 0.12 deleterious(0.01) possibly_damaging(0.772) TCGA-SO-A8JP-01 5 176729427 176729427 T G RAB24 Missense_Mutation p.D135A 0.06 deleterious(0.04) possibly_damaging(0.733) TCGA-SO-A8JP-01 6 130762743 130762743 G T TMEM200A Silent p.S392S 0.32 TCGA-SO-A8JP-01 6 66094357 66094357 T A EYS Missense_Mutation p.K407N 0.34 tolerated(0.19) benign(0.018) TCGA-SO-A8JP-01 7 30129789 30129789 T G PLEKHA8 Nonstop_Mutation p.*441Gext*6 0.11 TCGA-SO-A8JP-01 9 71629038 71629039 - GCGGCG PRKACG 5'UTR 0.32 TCGA-SO-A8JP-01 9 96408040 96408040 G T PHF2 Silent p.T143T 0.06 TCGA-VF-A8A8-01 10 61815643 61815643 T C ANK3 Missense_Mutation p.K4280E 0.52 benign(0.049) TCGA-VF-A8A8-01 10 871022 871045 AGGAGAGGATTCGAGACTGCCTGG TCGAGACTGC LARP4B Frame_Shift_Del p.P482Afs*65 0.36 TCGA-VF-A8A8-01 10 96997861 96997861 A G PDLIM1 Missense_Mutation p.F271L 0.47 tolerated(0.06) possibly_damaging(0.457) TCGA-VF-A8A8-01 11 102221221 102221221 A G BIRC2 Missense_Mutation p.I212M 0.09 deleterious(0.02) possibly_damaging(0.595) TCGA-VF-A8A8-01 11 102221245 102221245 C T BIRC2 Silent p.C220C 0.08 TCGA-VF-A8A8-01 11 118415460 118415460 C T IFT46 3'UTR 0.56 TCGA-VF-A8A8-01 11 89896981 89896981 G T NAALAD2 Intron 0.20 TCGA-VF-A8A8-01 12 110376285 110376285 G T GIT2 Missense_Mutation p.P635T 0.06 deleterious(0.01) benign(0.127) TCGA-VF-A8A8-01 12 117318878 117318878 C A HRK Missense_Mutation p.A79S 0.18 tolerated_low_confidence(0.1) possibly_damaging(0.567) TCGA-VF-A8A8-01 12 20769229 20769229 C G PDE3A Silent p.T445T 0.11 TCGA-VF-A8A8-01 12 54117502 54117502 C T CALCOCO1 Missense_Mutation p.V109M 0.18 tolerated(0.08) probably_damaging(0.914) TCGA-VF-A8A8-01 13 114325882 114325882 C T GRK1 Missense_Mutation p.A299V 0.30 deleterious(0) probably_damaging(0.972) TCGA-VF-A8A8-01 14 102904488 102904488 C G TECPR2 Missense_Mutation p.L842V 0.05 deleterious(0) benign(0.19) TCGA-VF-A8A8-01 14 93760896 93760896 C T BTBD7 Missense_Mutation p.R157H 0.05 deleterious(0) probably_damaging(0.99) TCGA-VF-A8A8-01 15 42703172 42703172 G T CAPN3 Missense_Mutation p.C785F 0.07 deleterious(0) probably_damaging(0.999) TCGA-VF-A8A8-01 15 49462468 49462468 G T GALK2 5'UTR 0.12 TCGA-VF-A8A8-01 15 56035139 56035139 C A PRTG 5'UTR 0.63 TCGA-VF-A8A8-01 15 62212292 62212292 T C VPS13C Missense_Mutation p.E2484G 0.09 tolerated(0.08) possibly_damaging(0.756) TCGA-VF-A8A8-01 15 65370090 65370090 C T KBTBD13 Missense_Mutation p.R313W 0.10 deleterious(0) benign(0.014) TCGA-VF-A8A8-01 16 2946442 2946442 G T FLYWCH2 5'UTR 0.13 TCGA-VF-A8A8-01 16 4659598 4659598 G T UBALD1 3'UTR 0.17 TCGA-VF-A8A8-01 16 67683478 67683478 C A RLTPR Silent p.G625G 0.41 TCGA-VF-A8A8-01 16 75563911 75563911 G T CHST5 Nonsense_Mutation p.C124* 0.08 TCGA-VF-A8A8-01 17 67251698 67251698 G C ABCA5 Missense_Mutation p.P1352A 0.03 tolerated(0.36) benign(0.077) TCGA-VF-A8A8-01 17 79845921 79845921 G T ALYREF 3'UTR 0.04 TCGA-VF-A8A8-01 19 22156903 22156903 C T ZNF208 Silent p.K311K 0.50 TCGA-VF-A8A8-01 19 2810234 2810234 C T THOP1 Intron 0.10 TCGA-VF-A8A8-01 19 8609310 8609310 G A MYO1F Silent p.C465C 0.05 TCGA-VF-A8A8-01 1 205274386 205274386 T A NUAK2 Missense_Mutation p.H255L 0.14 tolerated(0.4) possibly_damaging(0.622) TCGA-VF-A8A8-01 1 2235825 2235825 C T SKI Missense_Mutation p.S523L 0.48 tolerated(0.35) benign(0.006) TCGA-VF-A8A8-01 20 44574893 44574893 G T PCIF1 Missense_Mutation p.V495L 0.18 deleterious(0.04) possibly_damaging(0.572) TCGA-VF-A8A8-01 22 18900987 18900987 G C PRODH Missense_Mutation p.L527V 0.47 deleterious(0.01) possibly_damaging(0.638) TCGA-VF-A8A8-01 2 11964978 11964978 G T LPIN1 3'UTR 0.06 TCGA-VF-A8A8-01 2 141294207 141294207 T C LRP1B Missense_Mutation p.T2529A 0.38 possibly_damaging(0.523) TCGA-VF-A8A8-01 2 198334798 198334798 C A COQ10B Missense_Mutation p.S151Y 0.05 deleterious(0.03) probably_damaging(0.995) TCGA-VF-A8A8-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.11 TCGA-VF-A8A8-01 2 96940775 96940775 G C SNRNP200 Missense_Mutation p.A2129G 0.31 tolerated(1) benign(0) TCGA-VF-A8A8-01 3 47045654 47045656 TCT - NBEAL2 In_Frame_Del p.F1992del 0.09 TCGA-VF-A8A8-01 3 97852456 97852456 A C OR5H1 Missense_Mutation p.L305F 0.15 tolerated(0.13) benign(0.011) TCGA-VF-A8A8-01 4 141483480 141483480 C T UCP1 Missense_Mutation p.A226T 0.23 tolerated(0.87) benign(0.007) TCGA-VF-A8A8-01 4 46994860 46994860 G A GABRA4 Missense_Mutation p.R64C 0.39 deleterious(0) probably_damaging(1) TCGA-VF-A8A8-01 5 149932837 149932837 T G NDST1 Nonsense_Mutation p.Y864* 0.52 TCGA-VF-A8A8-01 5 171520918 171520918 C A STK10 Missense_Mutation p.S351I 0.49 deleterious(0.02) benign(0.174) TCGA-VF-A8A8-01 6 26056602 26056602 G C HIST1H1C Missense_Mutation p.P19A 0.36 tolerated(0.07) possibly_damaging(0.539) TCGA-VF-A8A8-01 6 90276740 90276740 C G ANKRD6 Silent p.L15L 0.09 TCGA-VF-A8A8-01 8 142437898 142437898 C T PTP4A3 Silent p.Y126Y 0.09 TCGA-VF-A8A8-01 8 17885385 17885385 C T PCM1 3'UTR 0.11 TCGA-VF-A8A8-01 9 103340815 103340815 C T MURC Silent p.F130F 0.10 TCGA-VF-A8A8-01 9 104307104 104307104 G T RNF20 Missense_Mutation p.E228D 0.05 deleterious(0.03) benign(0.217) TCGA-VF-A8A8-01 9 111704981 111704981 G T CTNNAL1 3'UTR 0.05 TCGA-VF-A8A8-01 9 139399283 139399283 G T NOTCH1 Nonsense_Mutation p.Y1620* 0.05 TCGA-VF-A8A8-01 X 17047745 17047745 G A REPS2 Missense_Mutation p.R257Q 0.10 tolerated(0.35) benign(0.026) TCGA-VF-A8A8-01 X 17750309 17750309 G A NHS Missense_Mutation p.D1540N 0.40 tolerated(0.1) benign(0.152) TCGA-VF-A8A8-01 X 54285766 54285766 T C WNK3 Silent p.V681V 0.31 TCGA-VF-A8AB-01 12 108938917 108938917 G A SART3 Missense_Mutation p.R243W 0.24 deleterious(0) possibly_damaging(0.836) TCGA-VF-A8AB-01 16 19722702 19722702 T C KNOP1 Missense_Mutation p.I327V 0.14 deleterious(0.03) possibly_damaging(0.731) TCGA-VF-A8AB-01 16 2156409 2156409 G C PKD1 Missense_Mutation p.F2493L 0.17 probably_damaging(0.981) TCGA-VF-A8AB-01 16 47630436 47630436 C G PHKB Missense_Mutation p.L453V 0.11 deleterious(0) probably_damaging(0.999) TCGA-VF-A8AB-01 16 89345676 89345676 T A ANKRD11 Missense_Mutation p.D2425V 0.13 probably_damaging(0.968) TCGA-VF-A8AB-01 16 89345677 89345677 C A ANKRD11 Missense_Mutation p.D2425Y 0.13 probably_damaging(0.984) TCGA-VF-A8AB-01 17 4351498 4351498 G T SPNS3 Missense_Mutation p.V224F 0.09 deleterious(0) probably_damaging(0.974) TCGA-VF-A8AB-01 19 4409387 4409387 C T CHAF1A Silent p.G197G 0.08 TCGA-VF-A8AB-01 19 50434258 50434258 C T ATF5 Missense_Mutation p.L51F 0.19 tolerated(0.31) benign(0.154) TCGA-VF-A8AB-01 22 18273827 18273832 GCTCCC - MICAL3 In_Frame_Del p.R1919_E1920del 0.16 TCGA-VF-A8AB-01 2 135920150 135920150 A T RAB3GAP1 Missense_Mutation p.K772I 0.10 deleterious(0) possibly_damaging(0.786) TCGA-VF-A8AB-01 2 165793940 165793940 C G SLC38A11 Splice_Site p.X124_splice 0.09 TCGA-VF-A8AB-01 5 32712263 32712263 G A NPR3 Silent p.K127K 0.19 TCGA-VF-A8AB-01 6 83847668 83847668 G T DOPEY1 Missense_Mutation p.A1303S 0.12 tolerated(0.5) benign(0.02) TCGA-VF-A8AB-01 7 100395208 100395208 G A ZAN Silent p.T2700T 0.10 TCGA-VF-A8AB-01 7 5104859 5104859 G T RBAK Missense_Mutation p.G591V 0.07 deleterious(0) probably_damaging(1) TCGA-VF-A8AB-01 7 75621541 75621541 C T STYXL1 3'Flank 0.07 TCGA-VF-A8AB-01 8 8999163 8999163 G A PPP1R3B 5'UTR 0.12 TCGA-VF-A8AC-01 10 70525822 70525822 G C CCAR1 Missense_Mutation p.E762Q 0.09 deleterious(0) probably_damaging(0.932) TCGA-VF-A8AC-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.37 deleterious(0.03) benign(0.376) TCGA-VF-A8AC-01 14 35761787 35761787 A T PSMA6 Intron 0.12 TCGA-VF-A8AC-01 14 53522376 53522376 A G DDHD1 Splice_Site p.X749_splice 0.12 TCGA-VF-A8AC-01 16 67006271 67006271 C T CES3 Missense_Mutation p.P435L 0.13 deleterious(0.01) possibly_damaging(0.834) TCGA-VF-A8AC-01 19 38103317 38103317 G C ZNF540 Missense_Mutation p.G379A 0.12 deleterious(0) possibly_damaging(0.768) TCGA-VF-A8AC-01 19 52496353 52496353 T G ZNF615 Missense_Mutation p.K670T 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-VF-A8AC-01 19 55021893 55021893 C T LAIR2 3'UTR 0.11 TCGA-VF-A8AC-01 1 39878675 39878704 CAGTATCTGTCCCTGAAGGGACTGCTGCAG - KIAA0754 In_Frame_Del p.T777_V787delinsI 0.10 TCGA-VF-A8AC-01 22 41252581 41252581 G A ST13 5'UTR 0.09 TCGA-VF-A8AC-01 4 5837737 5837737 G A CRMP1 Missense_Mutation p.P510S 0.17 deleterious(0) possibly_damaging(0.869) TCGA-VF-A8AC-01 5 175875462 175875462 G A FAF2 Silent p.L18L 0.26 TCGA-VF-A8AC-01 6 80747723 80747723 G A TTK Missense_Mutation p.D697N 0.09 deleterious(0) benign(0.334) TCGA-VF-A8AC-01 8 66605961 66605961 C A MTFR1 Missense_Mutation p.A83D 0.25 tolerated(0.39) probably_damaging(0.98) TCGA-VF-A8AC-01 8 95655639 95655639 A G ESRP1 Missense_Mutation p.K124E 0.07 tolerated(0.07) benign(0.271) TCGA-VF-A8AC-01 X 153540936 153540936 G T TKTL1 Nonsense_Mutation p.E226* 0.05 TCGA-VF-A8AD-01 10 61718595 61718595 T A C10orf40 5'UTR 0.18 TCGA-VF-A8AD-01 11 5776663 5776663 C T OR52N4 Silent p.S231S 0.15 TCGA-VF-A8AD-01 12 124825195 124825195 G A NCOR2 Missense_Mutation p.A1764V 0.15 possibly_damaging(0.701) TCGA-VF-A8AD-01 13 48835502 48835502 C A ITM2B 3'UTR 0.24 TCGA-VF-A8AD-01 14 107049074 107049074 C A IGHV3-53 Splice_Site p.X16_splice 0.17 TCGA-VF-A8AD-01 15 89010689 89010689 C T MRPS11 5'UTR 0.27 TCGA-VF-A8AD-01 17 15466838 15466838 G A TVP23C-CDRT4 5'UTR 0.11 TCGA-VF-A8AD-01 17 21188117 21188117 C T MAP2K3 5'UTR 0.06 TCGA-VF-A8AD-01 17 39323995 39323995 A C KRTAP4-3 Missense_Mutation p.C144G 0.05 deleterious(0.01) unknown(0) TCGA-VF-A8AD-01 19 17945938 17945938 G A JAK3 Silent p.I667I 0.16 TCGA-VF-A8AD-01 1 186344328 186344328 C G TPR 5'UTR 0.17 TCGA-VF-A8AD-01 1 209968742 209968742 C T IRF6 Nonsense_Mutation p.W134* 0.15 TCGA-VF-A8AD-01 1 47533216 47533216 C A CYP4Z1 Silent p.I18I 0.32 TCGA-VF-A8AD-01 20 8000252 8000252 A C TMX4 Silent p.G3G 0.25 TCGA-VF-A8AD-01 21 31768921 31768921 T C KRTAP13-1 Nonstop_Mutation p.*173Rext*4 0.27 TCGA-VF-A8AD-01 2 26950833 26950833 C T KCNK3 Silent p.F194F 0.18 TCGA-VF-A8AD-01 2 97363297 97363297 A T FER1L5 RNA 0.03 TCGA-VF-A8AD-01 4 126240963 126240963 G T FAT4 Nonsense_Mutation p.G1133* 0.20 TCGA-VF-A8AD-01 4 8621216 8621216 G C CPZ Missense_Mutation p.G611R 0.23 tolerated(0.46) benign(0.003) TCGA-VF-A8AD-01 5 35753823 35753823 C T SPEF2 Missense_Mutation p.T1143I 0.19 tolerated(0.16) benign(0.002) TCGA-VF-A8AD-01 6 107585556 107585556 A C PDSS2 Intron 0.17 TCGA-VF-A8AD-01 6 108214783 108214783 G C SEC63 Nonsense_Mutation p.S526* 0.19 TCGA-VF-A8AD-01 7 107531648 107531648 G T DLD 5'UTR 0.13 TCGA-VF-A8AD-01 7 76889506 76889506 G A CCDC146 Silent p.K313K 0.15 TCGA-VF-A8AD-01 9 35802591 35802591 G A NPR2 Missense_Mutation p.R601H 0.05 deleterious(0) probably_damaging(0.998) TCGA-VF-A8AE-01 11 46001326 46001326 G A PHF21A Silent p.N115N 0.18 TCGA-VF-A8AE-01 11 62568854 62568854 G T NXF1 Missense_Mutation p.R249S 0.07 deleterious(0) possibly_damaging(0.463) TCGA-VF-A8AE-01 12 48152394 48152394 C A RAPGEF3 5'UTR 0.08 TCGA-VF-A8AE-01 14 55655696 55655696 G T DLGAP5 Missense_Mutation p.Q68K 0.05 deleterious(0.01) benign(0.097) TCGA-VF-A8AE-01 16 1574556 1574556 G T IFT140 Nonsense_Mutation p.C1046* 0.06 TCGA-VF-A8AE-01 17 73016470 73016470 C T ICT1 Missense_Mutation p.R116W 0.06 deleterious(0) probably_damaging(0.999) TCGA-VF-A8AE-01 19 16923606 16923606 G A NWD1 Intron 0.04 TCGA-VF-A8AE-01 19 36038332 36038332 G T TMEM147 Missense_Mutation p.V220F 0.08 deleterious(0.03) benign(0.416) TCGA-VF-A8AE-01 19 56223293 56223293 C T NLRP9 Missense_Mutation p.A906T 0.06 deleterious(0) possibly_damaging(0.845) TCGA-VF-A8AE-01 1 158435624 158435624 C A OR10K1 Silent p.T91T 0.06 TCGA-VF-A8AE-01 1 243354757 243354757 G A CEP170 Missense_Mutation p.A224V 0.09 tolerated(0.24) benign(0.15) TCGA-VF-A8AE-01 1 54871735 54871735 A G SSBP3 5'UTR 0.23 TCGA-VF-A8AE-01 21 34896954 34896954 C G GART Intron 0.17 TCGA-VF-A8AE-01 2 179451955 179451955 G C TTN Missense_Mutation p.T21328S 0.09 TCGA-VF-A8AE-01 2 96780535 96780535 G A ADRA2B 3'UTR 0.09 TCGA-VF-A8AE-01 6 1613351 1613351 G C FOXC1 3'UTR 0.04 TCGA-VF-A8AE-01 7 120385930 120385930 C A KCND2 Missense_Mutation p.Q522K 0.10 tolerated_low_confidence(0.93) benign(0.103) TCGA-VF-A8AE-01 8 61429651 61429651 G A RAB2A 5'UTR 0.05 TCGA-VF-A8AE-01 8 8234017 8234017 C T SGK223 Silent p.Q634Q 0.07 TCGA-VF-A8AE-01 9 135073687 135073687 G A NTNG2 Missense_Mutation p.R183H 0.05 tolerated(0.11) possibly_damaging(0.758) TCGA-W4-A7U4-01 18 76886287 76886287 T C ATP9B Silent p.T193T 0.05 TCGA-W4-A7U4-01 19 3909500 3909500 T - ATCAY Frame_Shift_Del p.L222* 0.27 TCGA-W4-A7U4-01 19 41932262 41932262 C G B3GNT8 Missense_Mutation p.S141T 0.32 tolerated(0.4) benign(0.039) TCGA-W4-A7U4-01 1 222903028 222903028 C T BROX Nonsense_Mutation p.Q275* 0.07 TCGA-W4-A7U4-01 20 45017782 45017782 C T ELMO2 Silent p.L107L 0.21 TCGA-W4-A7U4-01 2 127413734 127413734 C G GYPC 5'UTR 0.15 TCGA-W4-A7U4-01 8 12886093 12886093 T C KIAA1456 3'UTR 0.24 TCGA-W4-A7U4-01 X 151935083 151935083 G T MAGEA3 3'UTR 0.05 TCGA-WZ-A7V3-01 11 111728380 111728380 C T ALG9 Missense_Mutation p.V45M 0.39 deleterious(0) possibly_damaging(0.718) TCGA-WZ-A7V3-01 13 23909357 23909357 G C SACS Missense_Mutation p.H2886Q 0.32 probably_damaging(0.993) TCGA-WZ-A7V3-01 14 90744616 90744616 G T NRDE2 3'UTR 0.04 TCGA-WZ-A7V3-01 15 91810817 91810817 G T SV2B Silent p.G384G 0.28 TCGA-WZ-A7V3-01 16 1245464 1245464 G T CACNA1H Silent p.A148A 0.06 TCGA-WZ-A7V3-01 17 3999200 3999200 G A ZZEF1 Missense_Mutation p.A613V 0.25 tolerated(0.16) possibly_damaging(0.604) TCGA-WZ-A7V3-01 17 78313950 78313951 - GGTCTGTGA RNF213 In_Frame_Ins p.C1930_D1931insEVC 0.12 TCGA-WZ-A7V3-01 19 11832404 11832404 G T ZNF823 3'UTR 0.28 TCGA-WZ-A7V3-01 19 18084736 18084736 G A KCNN1 Silent p.P13P 0.13 TCGA-WZ-A7V3-01 19 44778517 44778517 G T ZNF233 Silent p.V568V 0.19 TCGA-WZ-A7V3-01 19 47028997 47028997 C A PPP5D1 Missense_Mutation p.V94L 0.22 deleterious(0.03) possibly_damaging(0.813) TCGA-WZ-A7V3-01 2 182358131 182358131 G A ITGA4 Silent p.S411S 0.14 TCGA-WZ-A7V3-01 2 32690161 32690161 C T BIRC6 Missense_Mutation p.A1762V 0.21 probably_damaging(0.985) TCGA-WZ-A7V3-01 3 150396273 150396273 C A FAM194A Missense_Mutation p.D394Y 0.13 deleterious(0.01) possibly_damaging(0.804) TCGA-WZ-A7V3-01 5 64867809 64867809 A G PPWD1 Missense_Mutation p.H222R 0.35 deleterious(0) probably_damaging(0.998) TCGA-WZ-A7V3-01 5 65004355 65004355 G A SGTB Missense_Mutation p.P79S 0.41 deleterious(0.03) benign(0.065) TCGA-WZ-A7V3-01 6 32123529 32123533 CCTCT - PPT2 Frame_Shift_Del p.S143Tfs*22 0.13 TCGA-WZ-A7V3-01 6 37336599 37336599 G A RNF8 Missense_Mutation p.E194K 0.20 tolerated(0.29) benign(0.004) TCGA-WZ-A7V3-01 6 56919177 56919177 T A KIAA1586 Missense_Mutation p.I627N 0.18 deleterious(0) benign(0.319) TCGA-WZ-A7V3-01 6 80752013 80752013 A G TTK 3'UTR 0.12 TCGA-WZ-A7V3-01 7 131817901 131817901 G T PLXNA4 Nonsense_Mutation p.Y1832* 0.06 TCGA-WZ-A7V3-01 7 156802391 156802391 G A MNX1 Silent p.T218T 0.14 TCGA-WZ-A7V3-01 8 101232531 101232532 TA - SPAG1 Frame_Shift_Del p.M521Efs*11 0.11 TCGA-WZ-A7V3-01 8 74464232 74464232 G A STAU2 Intron 0.20 TCGA-WZ-A7V5-01 10 37508722 37508722 T C ANKRD30A Missense_Mutation p.M1305T 0.18 tolerated(0.22) benign(0.011) TCGA-WZ-A7V5-01 10 64159608 64159608 C G ZNF365 Intron 0.07 TCGA-WZ-A7V5-01 11 126135872 126135872 C G SRPR Missense_Mutation p.R346P 0.17 deleterious(0) probably_damaging(0.962) TCGA-WZ-A7V5-01 12 132426156 132426156 C G PUS1 Missense_Mutation p.S288R 0.09 deleterious(0) probably_damaging(1) TCGA-WZ-A7V5-01 15 28474449 28474449 G A HERC2 Missense_Mutation p.P1722S 0.10 possibly_damaging(0.643) TCGA-WZ-A7V5-01 15 34048566 34048566 T G RYR3 Missense_Mutation p.F2859V 0.06 benign(0.405) TCGA-WZ-A7V5-01 15 52645822 52645822 G C MYO5A Missense_Mutation p.L1201V 0.09 tolerated(0.06) probably_damaging(0.967) TCGA-WZ-A7V5-01 15 75015099 75015099 G T CYP1A1 Missense_Mutation p.L114I 0.13 tolerated(0.08) benign(0.177) TCGA-WZ-A7V5-01 15 83357926 83357926 G A AP3B2 Missense_Mutation p.A83V 0.12 tolerated(0.64) benign(0.124) TCGA-WZ-A7V5-01 15 86076953 86076953 C G AKAP13 Missense_Mutation p.A107G 0.11 deleterious(0) probably_damaging(0.996) TCGA-WZ-A7V5-01 17 26897967 26897967 C A PIGS Silent p.V63V 0.06 TCGA-WZ-A7V5-01 17 59934456 59934456 T C BRIP1 Silent p.P114P 0.17 TCGA-WZ-A7V5-01 17 61904732 61904732 C T FTSJ3 5'UTR 0.15 TCGA-WZ-A7V5-01 17 7637852 7637852 A T DNAH2 Silent p.T268T 0.16 TCGA-WZ-A7V5-01 17 76471541 76471541 T C DNAH17 Missense_Mutation p.E2763G 0.08 benign(0.076) TCGA-WZ-A7V5-01 19 13249085 13249085 G C NACC1 Missense_Mutation p.K483N 0.20 deleterious(0.02) benign(0.001) TCGA-WZ-A7V5-01 19 14517723 14517723 C G CD97 Missense_Mutation p.Q720E 0.17 tolerated(0.12) benign(0.119) TCGA-WZ-A7V5-01 19 15276316 15276316 C T NOTCH3 Missense_Mutation p.R1893Q 0.14 deleterious(0) possibly_damaging(0.621) TCGA-WZ-A7V5-01 19 33647335 33647335 A G WDR88 Missense_Mutation p.K295R 0.17 tolerated(0.07) benign(0.395) TCGA-WZ-A7V5-01 19 49658348 49658348 G T HRC Silent p.L49L 0.14 TCGA-WZ-A7V5-01 20 52198674 52198675 AG - ZNF217 Frame_Shift_Del p.L231Nfs*2 0.09 TCGA-WZ-A7V5-01 20 5935892 5935892 C T MCM8 Missense_Mutation p.H161Y 0.15 tolerated(0.2) probably_damaging(0.998) TCGA-WZ-A7V5-01 21 27327999 27327999 T C APP Missense_Mutation p.K510R 0.05 tolerated(1) probably_damaging(0.941) TCGA-WZ-A7V5-01 22 18016810 18016810 A T CECR2 Missense_Mutation p.K355M 0.15 deleterious(0.01) probably_damaging(0.971) TCGA-WZ-A7V5-01 2 180810353 180810353 G C CWC22 Missense_Mutation p.Q744E 0.13 tolerated_low_confidence(0.08) benign(0) TCGA-WZ-A7V5-01 2 201768552 201768552 A G NIF3L1 3'UTR 0.20 TCGA-WZ-A7V5-01 2 228884665 228884665 G A SPHKAP Missense_Mutation p.S302L 0.11 tolerated(0.14) benign(0.013) TCGA-WZ-A7V5-01 2 32690146 32690146 C G BIRC6 Missense_Mutation p.S1757C 0.22 benign(0.319) TCGA-WZ-A7V5-01 2 61708414 61708414 G C XPO1 Missense_Mutation p.A992G 0.10 tolerated(0.31) benign(0.027) TCGA-WZ-A7V5-01 3 169802035 169802035 A T GPR160 Missense_Mutation p.Y92F 0.24 deleterious(0) probably_damaging(0.979) TCGA-WZ-A7V5-01 3 48508121 48508121 G A TREX1 Missense_Mutation p.G78S 0.08 deleterious(0.02) probably_damaging(1) TCGA-WZ-A7V5-01 3 57132107 57132107 G C IL17RD Missense_Mutation p.L542V 0.10 deleterious(0) probably_damaging(0.998) TCGA-WZ-A7V5-01 4 46390955 46390955 C T GABRA2 Intron 0.22 TCGA-WZ-A7V5-01 4 55599321 55599321 A T KIT Missense_Mutation p.D816V 0.09 deleterious(0) probably_damaging(0.977) TCGA-WZ-A7V5-01 5 13839638 13839638 C A DNAH5 Splice_Site p.X1904_splice 0.09 TCGA-WZ-A7V5-01 6 122766308 122766308 C T SERINC1 Missense_Mutation p.E415K 0.12 tolerated(0.88) benign(0.01) TCGA-WZ-A7V5-01 6 129609102 129609102 C G LAMA2 Missense_Mutation p.S883C 0.08 deleterious(0) probably_damaging(0.986) TCGA-WZ-A7V5-01 6 145148508 145148508 G A UTRN Nonsense_Mutation p.W3173* 0.11 TCGA-WZ-A7V5-01 6 39513397 39513397 C T KIF6 Missense_Mutation p.D417N 0.08 deleterious(0.04) possibly_damaging(0.742) TCGA-WZ-A7V5-01 6 41029397 41029397 C G APOBEC2 Silent p.L154L 0.14 TCGA-WZ-A7V5-01 7 64389258 64389258 G T ZNF273 Nonsense_Mutation p.E518* 0.07 TCGA-WZ-A7V5-01 8 17163456 17163456 G C MTMR7 Missense_Mutation p.L388V 0.21 tolerated(0.14) possibly_damaging(0.894) TCGA-WZ-A7V5-01 8 1954065 1954065 C G KBTBD11 3'UTR 0.17 TCGA-WZ-A7V5-01 8 8750110 8750110 C G MFHAS1 Missense_Mutation p.Q153H 0.16 tolerated(0.19) benign(0.191) TCGA-WZ-A7V5-01 9 14819320 14819320 G A FREM1 Missense_Mutation p.P820S 0.09 deleterious(0) probably_damaging(0.969) TCGA-WZ-A7V5-01 9 19070216 19070216 C A HAUS6 Splice_Site p.X459_splice 0.18 TCGA-WZ-A7V5-01 9 34552324 34552324 G A CNTFR Missense_Mutation p.T318I 0.44 deleterious(0.01) possibly_damaging(0.86) TCGA-WZ-A7V5-01 9 99150303 99150303 T G ZNF367 3'UTR 0.23 TCGA-WZ-A7V5-01 X 153701138 153701138 G A PLXNA3 3'UTR 0.28 TCGA-WZ-A7V5-01 X 54265469 54265469 C T WNK3 Missense_Mutation p.G1239S 0.25 tolerated(0.11) benign(0.222) TCGA-WZ-A8D5-01 13 53239790 53239791 AG - SUGT1 Frame_Shift_Del p.E180Ifs*16 0.13 TCGA-WZ-A8D5-01 14 63779821 63779821 G A GPHB5 RNA 0.17 TCGA-WZ-A8D5-01 17 7386120 7386120 G C SLC35G6 Missense_Mutation p.A273P 0.08 deleterious(0) probably_damaging(1) TCGA-WZ-A8D5-01 17 79612648 79612648 C T TSPAN10 Nonsense_Mutation p.Q223* 0.10 TCGA-WZ-A8D5-01 17 79993814 79993814 G T DCXR 3'UTR 0.10 TCGA-WZ-A8D5-01 19 1775247 1775247 A G ONECUT3 Missense_Mutation p.I430V 0.26 tolerated(0.51) benign(0.023) TCGA-WZ-A8D5-01 19 49967466 49967466 G A ALDH16A1 Missense_Mutation p.G426D 0.20 tolerated(0.08) possibly_damaging(0.772) TCGA-WZ-A8D5-01 1 27216507 27216507 C T GPN2 Silent p.L27L 0.22 TCGA-WZ-A8D5-01 3 37285020 37285020 A G GOLGA4 5'UTR 0.09 TCGA-WZ-A8D5-01 4 8470016 8470016 A G TRMT44 Missense_Mutation p.K624E 0.25 tolerated(0.54) benign(0.003) TCGA-WZ-A8D5-01 5 138700433 138700433 G A PAIP2 Splice_Site p.X106_splice 0.06 TCGA-WZ-A8D5-01 6 126249822 126249822 G T NCOA7 Nonsense_Mutation p.G912* 0.06 TCGA-WZ-A8D5-01 8 110587804 110587804 C T SYBU Silent p.L441L 0.15 TCGA-WZ-A8D5-01 8 143747534 143747534 C A JRK RNA 0.12 TCGA-WZ-A8D5-01 X 151896095 151896095 G A MAGEA12 3'Flank 0.17 TCGA-X3-A8G4-01 10 127789652 127789652 C T ADAM12 Silent p.A303A 0.12 TCGA-X3-A8G4-01 10 129911726 129911726 T C MKI67 Missense_Mutation p.M541V 0.44 tolerated(0.13) benign(0) TCGA-X3-A8G4-01 11 133789875 133789875 G A IGSF9B Nonsense_Mutation p.R1249* 0.17 TCGA-X3-A8G4-01 11 67051341 67051341 T C ADRBK1 Missense_Mutation p.I471T 0.09 deleterious(0.05) benign(0.103) TCGA-X3-A8G4-01 11 71906977 71906977 C A FOLR1 Missense_Mutation p.P177H 0.15 deleterious(0.02) benign(0.053) TCGA-X3-A8G4-01 12 113623183 113623183 C A DDX54 Missense_Mutation p.G25V 0.15 tolerated_low_confidence(0.13) possibly_damaging(0.89) TCGA-X3-A8G4-01 12 18544127 18544127 G T PIK3C2G Missense_Mutation p.E648D 0.05 tolerated(0.05) possibly_damaging(0.752) TCGA-X3-A8G4-01 12 18872383 18872383 T C PLCZ1 Missense_Mutation p.D184G 0.14 tolerated(0.05) possibly_damaging(0.595) TCGA-X3-A8G4-01 12 22012586 22012586 A T ABCC9 Missense_Mutation p.S813R 0.07 deleterious(0) probably_damaging(0.998) TCGA-X3-A8G4-01 12 40713816 40713816 T A LRRK2 Nonsense_Mutation p.C1618* 0.17 TCGA-X3-A8G4-01 12 56088587 56088587 G T ITGA7 Nonsense_Mutation p.S728* 0.06 TCGA-X3-A8G4-01 14 103946751 103946751 C T MARK3 Nonsense_Mutation p.R504* 0.11 TCGA-X3-A8G4-01 16 54319129 54319129 C T IRX3 Missense_Mutation p.G222S 0.18 tolerated(0.45) benign(0.001) TCGA-X3-A8G4-01 16 67416139 67416139 T A LRRC36 Missense_Mutation p.H678Q 0.27 tolerated(1) benign(0.026) TCGA-X3-A8G4-01 16 67697165 67697165 C G ENKD1 Missense_Mutation p.A314P 0.16 tolerated(0.07) probably_damaging(0.99) TCGA-X3-A8G4-01 17 18150241 18150241 G A FLII Silent p.Y934Y 0.08 TCGA-X3-A8G4-01 17 48195666 48195666 C T SAMD14 Silent p.T23T 0.07 TCGA-X3-A8G4-01 19 34818343 34818346 AGAA - KIAA0355 Frame_Shift_Del p.R243Afs*27 0.24 TCGA-X3-A8G4-01 19 408019 408019 C T C2CD4C Missense_Mutation p.E115K 0.08 deleterious(0.02) probably_damaging(0.983) TCGA-X3-A8G4-01 19 4179130 4179130 G A SIRT6 Silent p.D116D 0.23 TCGA-X3-A8G4-01 19 47214195 47214195 G A PRKD2 Silent p.F160F 0.08 TCGA-X3-A8G4-01 1 120839624 120839624 G A FAM72B 5'UTR 0.06 TCGA-X3-A8G4-01 22 30184941 30184941 G A ASCC2 3'UTR 0.07 TCGA-X3-A8G4-01 2 128066276 128066276 G A MAP3K2 Missense_Mutation p.R507W 0.26 deleterious(0) probably_damaging(0.961) TCGA-X3-A8G4-01 2 170115533 170115533 A C LRP2 Splice_Site p.X838_splice 0.30 TCGA-X3-A8G4-01 2 21230922 21230922 C T APOB Missense_Mutation p.G2940R 0.28 probably_damaging(0.999) TCGA-X3-A8G4-01 2 75185871 75185871 C T POLE4 Missense_Mutation p.A22V 0.26 tolerated(0.22) possibly_damaging(0.483) TCGA-X3-A8G4-01 3 13545733 13545733 C T HDAC11 Silent p.L263L 0.23 TCGA-X3-A8G4-01 3 142443345 142443345 T G TRPC1 5'UTR 0.29 TCGA-X3-A8G4-01 3 48508314 48508314 T C TREX1 Missense_Mutation p.L142P 0.10 deleterious(0) probably_damaging(1) TCGA-X3-A8G4-01 4 186066080 186066080 A G SLC25A4 Missense_Mutation p.K92E 0.21 deleterious(0) probably_damaging(0.978) TCGA-X3-A8G4-01 6 158873228 158873228 A G TULP4 Missense_Mutation p.T263A 0.09 tolerated(0.32) benign(0.028) TCGA-X3-A8G4-01 7 90896566 90896566 T C FZD1 3'UTR 0.24 TCGA-X3-A8G4-01 7 95225507 95225507 G A PDK4 Silent p.S33S 0.12 TCGA-X3-A8G4-01 8 10468935 10468935 C A RP1L1 Silent p.G891G 0.43 TCGA-X3-A8G4-01 9 124094758 124094758 G C GSN Silent p.T742T 0.19 TCGA-X3-A8G4-01 9 134404415 134404415 G A UCK1 Silent p.D178D 0.12 TCGA-X3-A8G4-01 X 15276999 15276999 G A ASB9 Missense_Mutation p.L55F 0.13 deleterious(0.02) probably_damaging(0.996) TCGA-X3-A8G4-01 X 15277000 15277000 G T ASB9 Missense_Mutation p.N54K 0.14 tolerated(0.6) benign(0.005) TCGA-XE-A8H1-01 12 7084421 7084421 C G EMG1 Missense_Mutation p.P167A 0.07 deleterious(0.01) TCGA-XE-A8H1-01 15 72767235 72767235 C T ARIH1 Silent p.G85G 0.10 TCGA-XE-A8H1-01 19 41113429 41113429 G T LTBP4 Missense_Mutation p.G451C 0.05 deleterious(0) benign(0.385) TCGA-XE-A8H1-01 19 49131956 49131956 C A SPHK2 Silent p.G297G 0.30 TCGA-XE-A8H1-01 1 1431226 1431226 T C ATAD3B 3'UTR 0.20 TCGA-XE-A8H1-01 1 45973168 45973168 G A MMACHC Missense_Mutation p.M74I 0.16 tolerated(0.23) benign(0) TCGA-XE-A8H1-01 21 46221684 46221684 G C UBE2G2 5'UTR 0.24 TCGA-XE-A8H1-01 2 224809898 224809898 T C WDFY1 Missense_Mutation p.K35R 0.21 tolerated(0.42) benign(0.042) TCGA-XE-A8H1-01 3 110831212 110831212 G C PVRL3 Missense_Mutation p.V166L 0.15 deleterious(0.01) benign(0.121) TCGA-XE-A8H1-01 4 184368727 184368727 G T CDKN2AIP 3'UTR 0.25 TCGA-XE-A8H1-01 X 102841037 102841037 T G TCEAL4 5'UTR 0.28 TCGA-XE-A8H1-01 X 27765692 27765692 A G DCAF8L2 Missense_Mutation p.H227R 0.37 deleterious(0) probably_damaging(1) TCGA-XE-A8H4-01 12 26383896 26383896 C T SSPN Missense_Mutation p.L207F 0.07 tolerated(0.12) benign(0.017) TCGA-XE-A8H4-01 12 994308 994308 A G WNK1 Silent p.A1446A 0.24 TCGA-XE-A8H4-01 14 45618040 45618040 G T FANCM Missense_Mutation p.A254S 0.14 tolerated(0.14) benign(0.038) TCGA-XE-A8H4-01 16 67918828 67918828 C T NRN1L Missense_Mutation p.R8C 0.19 tolerated_low_confidence(0.16) unknown(0) TCGA-XE-A8H4-01 16 88068971 88068971 G C BANP Missense_Mutation p.E404Q 0.09 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-XE-A8H4-01 17 27015153 27015153 G T SUPT6H Silent p.L1017L 0.07 TCGA-XE-A8H4-01 17 81006713 81006713 T C B3GNTL1 Intron 0.11 TCGA-XE-A8H4-01 19 10096522 10096522 G T COL5A3 Missense_Mutation p.P801H 0.07 unknown(0) TCGA-XE-A8H4-01 19 36582162 36582162 G A WDR62 Missense_Mutation p.V699M 0.10 deleterious(0.01) possibly_damaging(0.833) TCGA-XE-A8H4-01 3 62355878 62355878 G A FEZF2 Silent p.A420A 0.10 TCGA-XE-A8H4-01 7 16725542 16725542 C T BZW2 Missense_Mutation p.L140F 0.39 deleterious(0.01) benign(0.012) TCGA-XE-A8H4-01 8 65494205 65494205 G T BHLHE22 Silent p.L286L 0.09 TCGA-XE-A8H4-01 9 80430592 80430592 G C GNAQ Missense_Mutation p.P139R 0.41 tolerated(0.1) possibly_damaging(0.878) TCGA-XE-A8H4-01 X 110385387 110385387 T G PAK3 Missense_Mutation p.I80S 0.06 deleterious(0.01) possibly_damaging(0.476) TCGA-XE-A8H5-01 10 103766354 103766354 T C C10orf76 Missense_Mutation p.S331G 0.20 tolerated(0.2) benign(0.028) TCGA-XE-A8H5-01 10 71332771 71332771 G C NEUROG3 Missense_Mutation p.T10S 0.22 tolerated_low_confidence(0.64) benign(0.003) TCGA-XE-A8H5-01 11 1271284 1271284 C T MUC5B Missense_Mutation p.L4392F 0.31 benign(0.1) TCGA-XE-A8H5-01 11 68527806 68527806 C T CPT1A Missense_Mutation p.V677I 0.08 tolerated(0.07) possibly_damaging(0.846) TCGA-XE-A8H5-01 12 25398285 25398285 C G KRAS Missense_Mutation p.G12R 0.05 deleterious(0.03) benign(0.376) TCGA-XE-A8H5-01 12 968427 968427 C T WNK1 Missense_Mutation p.L473F 0.08 deleterious(0) unknown(0) TCGA-XE-A8H5-01 13 28014201 28014201 G T MTIF3 Missense_Mutation p.Q129K 0.41 tolerated(0.26) probably_damaging(0.956) TCGA-XE-A8H5-01 13 32721459 32721459 T G FRY Missense_Mutation p.L407R 0.37 deleterious(0) probably_damaging(1) TCGA-XE-A8H5-01 16 4848606 4848606 G A ROGDI Silent p.T165T 0.29 TCGA-XE-A8H5-01 17 42018286 42018286 G T PPY 3'UTR 0.22 TCGA-XE-A8H5-01 17 44060770 44060770 G A MAPT Silent p.G200G 0.31 TCGA-XE-A8H5-01 17 61905019 61905019 G T FTSJ3 5'UTR 0.26 TCGA-XE-A8H5-01 19 19611944 19611944 G A GATAD2A Missense_Mutation p.A407T 0.18 tolerated(0.1) benign(0.001) TCGA-XE-A8H5-01 19 52550107 52550107 C T ZNF432 Silent p.Q5Q 0.19 TCGA-XE-A8H5-01 19 806515 806515 G A PTBP1 Missense_Mutation p.A360T 0.17 tolerated(0.24) benign(0.001) TCGA-XE-A8H5-01 19 8159377 8159377 C T FBN3 Missense_Mutation p.R1953H 0.20 tolerated(0.09) benign(0.104) TCGA-XE-A8H5-01 1 151783858 151783858 C A RORC Silent p.L446L 0.19 TCGA-XE-A8H5-01 1 24406587 24406587 G A MYOM3 Silent p.G835G 0.24 TCGA-XE-A8H5-01 22 44893010 44893010 G A LDOC1L Nonsense_Mutation p.R143* 0.21 TCGA-XE-A8H5-01 2 141459406 141459406 G A LRP1B Missense_Mutation p.A2104V 0.24 possibly_damaging(0.483) TCGA-XE-A8H5-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.26 deleterious(0.02) probably_damaging(0.959) TCGA-XE-A8H5-01 3 4810414 4810414 A G ITPR1 Missense_Mutation p.Q1967R 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-XE-A8H5-01 3 75786560 75786560 T G ZNF717 Missense_Mutation p.K738N 0.32 deleterious(0) possibly_damaging(0.908) TCGA-XE-A8H5-01 4 73935349 73935349 G A COX18 Silent p.G6G 0.29 TCGA-XE-A8H5-01 5 140052912 140052912 G T DND1 Missense_Mutation p.T29K 0.38 deleterious(0) possibly_damaging(0.803) TCGA-XE-A8H5-01 5 149776279 149776279 G T TCOF1 Missense_Mutation p.G1406W 0.24 deleterious(0) probably_damaging(0.998) TCGA-XE-A8H5-01 6 26045834 26045834 C T HIST1H3C Silent p.L66L 0.27 TCGA-XE-A8H5-01 6 75904580 75904580 C A COL12A1 Missense_Mutation p.V53L 0.22 benign(0.1) TCGA-XE-A8H5-01 7 102279619 102279619 T G UPK3BL Missense_Mutation p.E171D 0.06 tolerated(0.2) benign(0.004) TCGA-XE-A8H5-01 7 120782123 120782149 ACTCACCATCTATAGAGAAGACCGCCC - CPED1 In_Frame_Del p.L662_P670del 0.12 TCGA-XE-A8H5-01 7 31735181 31735181 A T PPP1R17 Nonsense_Mutation p.K61* 0.08 TCGA-XE-A8H5-01 8 125520903 125520903 G C TATDN1 Nonsense_Mutation p.S139* 0.17 TCGA-XE-A8H5-01 8 140630919 140630919 C T KCNK9 Missense_Mutation p.G236E 0.14 deleterious(0) probably_damaging(0.991) TCGA-XE-A8H5-01 8 51503445 51503445 A G SNTG1 Missense_Mutation p.K273E 0.15 deleterious(0.04) benign(0.005) TCGA-XE-A8H5-01 9 139396539 139396539 G T NOTCH1 Missense_Mutation p.P1796T 0.65 tolerated(0.12) benign(0.259) TCGA-XE-A8H5-01 9 18775867 18775867 A T ADAMTSL1 Missense_Mutation p.R842W 0.21 deleterious(0) probably_damaging(0.988) TCGA-XE-A8H5-01 X 101909826 101909826 A T GPRASP1 Missense_Mutation p.N329Y 0.41 deleterious(0.04) benign(0.009) TCGA-XE-A8H5-01 X 101909834 101909834 C A GPRASP1 Silent p.A331A 0.43 TCGA-XE-A9SE-01 10 70333543 70333543 C G TET1 Nonsense_Mutation p.S483* 0.09 TCGA-XE-A9SE-01 12 11150095 11150096 CT - TAS2R20 Frame_Shift_Del p.S127Cfs*32 0.12 TCGA-XE-A9SE-01 12 49579631 49579631 G C TUBA1A Missense_Mutation p.P173R 0.18 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-XE-A9SE-01 12 56231059 56231081 AGGGCTGGTTTGGCACTCCCGTA - MMP19 Frame_Shift_Del p.T423Gfs*77 0.09 TCGA-XE-A9SE-01 12 66838439 66838439 C T GRIP1 Missense_Mutation p.E486K 0.16 deleterious(0) benign(0.174) TCGA-XE-A9SE-01 12 94542893 94542893 T A PLXNC1 Missense_Mutation p.I49N 0.16 deleterious_low_confidence(0) possibly_damaging(0.474) TCGA-XE-A9SE-01 15 20644362 20644362 G T HERC2P3 RNA 0.37 TCGA-XE-A9SE-01 16 66921128 66921128 C T PDP2 3'UTR 0.21 TCGA-XE-A9SE-01 17 74003793 74003794 AT - EVPL Frame_Shift_Del p.Y1831* 0.21 TCGA-XE-A9SE-01 19 23941617 23941617 A G ZNF681 5'UTR 0.11 TCGA-XE-A9SE-01 19 53885254 53885254 G T ZNF525 Missense_Mutation p.K474N 0.12 deleterious(0.01) possibly_damaging(0.483) TCGA-XE-A9SE-01 1 112524653 112524653 C T KCND3 Silent p.A232A 0.23 TCGA-XE-A9SE-01 1 25880446 25880446 C T LDLRAP1 Missense_Mutation p.T41M 0.27 deleterious(0.01) probably_damaging(0.917) TCGA-XE-A9SE-01 1 63021531 63021531 C T DOCK7 Missense_Mutation p.R854H 0.09 tolerated(0.12) benign(0.071) TCGA-XE-A9SE-01 2 105886112 105886112 T C TGFBRAP1 Missense_Mutation p.K675E 0.25 deleterious(0) probably_damaging(0.997) TCGA-XE-A9SE-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.29 deleterious(0.01) probably_damaging(1) TCGA-XE-A9SE-01 3 49094416 49094416 T A QRICH1 Missense_Mutation p.Y406F 0.14 deleterious(0) possibly_damaging(0.793) TCGA-XE-A9SE-01 4 77091110 77091110 G C SCARB2 Missense_Mutation p.H341Q 0.12 deleterious(0) probably_damaging(0.989) TCGA-XE-A9SE-01 5 228449 228449 G T SDHA Splice_Site p.X257_splice 0.06 TCGA-XE-A9SE-01 6 161771035 161771035 C T PARK2 3'UTR 0.14 TCGA-XE-A9SE-01 6 43491228 43491228 G A XPO5 3'UTR 0.32 TCGA-XE-A9SE-01 7 111926968 111926969 - AGTCC ZNF277 Frame_Shift_Ins p.G47Vfs*8 0.14 TCGA-XE-A9SE-01 7 47947691 47947691 G A PKD1L1 Missense_Mutation p.S462F 0.12 deleterious(0.02) probably_damaging(0.969) TCGA-XE-A9SE-01 9 127996190 127996190 T C RABEPK Silent p.C350C 0.08 TCGA-XE-AANI-01 10 70332658 70332658 C T TET1 Missense_Mutation p.T188I 0.24 tolerated(0.37) benign(0.004) TCGA-XE-AANI-01 11 802283 802283 G A PIDD Missense_Mutation p.P363L 0.23 deleterious(0) probably_damaging(1) TCGA-XE-AANI-01 12 110230496 110230496 C T TRPV4 Silent p.G595G 0.29 TCGA-XE-AANI-01 12 15669741 15669742 AC GGATTTAATGCTCTATCCTTTG PTPRO Frame_Shift_Ins p.T544Gfs*12 0.10 TCGA-XE-AANI-01 12 52567452 52567452 C A KRT80 Missense_Mutation p.V255L 0.27 deleterious(0) probably_damaging(0.99) TCGA-XE-AANI-01 12 60168593 60168593 G A SLC16A7 Missense_Mutation p.G173S 0.33 deleterious(0.02) probably_damaging(0.986) TCGA-XE-AANI-01 14 23874338 23874338 T C MYH6 Splice_Site p.X168_splice 0.35 TCGA-XE-AANI-01 15 31217365 31217365 G A FAN1 Silent p.P736P 0.42 TCGA-XE-AANI-01 15 70976695 70976695 C T UACA Silent p.A231A 0.25 TCGA-XE-AANI-01 16 30723654 30723654 G A SRCAP Silent p.L629L 0.25 TCGA-XE-AANI-01 17 1631599 1631599 G A WDR81 Missense_Mutation p.E1116K 0.30 deleterious(0.01) possibly_damaging(0.638) TCGA-XE-AANI-01 17 34077157 34077157 T G GAS2L2 Missense_Mutation p.D189A 0.42 deleterious(0.03) benign(0.162) TCGA-XE-AANI-01 17 36353755 36353755 G A RP11-1407O15.2 Missense_Mutation p.T369I 0.08 TCGA-XE-AANI-01 19 11546956 11546956 G T PRKCSH Silent p.L6L 0.39 TCGA-XE-AANI-01 19 45918201 45918201 C T ERCC1 Missense_Mutation p.R207Q 0.14 deleterious(0.02) possibly_damaging(0.474) TCGA-XE-AANI-01 19 6475290 6475299 TGCAGACGAG - DENND1C Frame_Shift_Del p.L347Afs*6 0.24 TCGA-XE-AANI-01 20 30064434 30064434 C T REM1 Silent p.A62A 0.19 TCGA-XE-AANI-01 22 47287258 47287258 A T TBC1D22A Missense_Mutation p.N269Y 0.19 tolerated(0.25) possibly_damaging(0.795) TCGA-XE-AANI-01 2 219264761 219264761 G T CTDSP1 5'UTR 0.50 TCGA-XE-AANI-01 2 25505572 25505572 G A DNMT3A Silent p.S62S 0.28 TCGA-XE-AANI-01 3 126261543 126261543 G A CHST13 3'UTR 0.28 TCGA-XE-AANI-01 3 51251594 51251594 C T DOCK3 Nonsense_Mutation p.Q390* 0.05 TCGA-XE-AANI-01 4 20729125 20729125 A G PACRGL 3'UTR 0.39 TCGA-XE-AANI-01 4 62679544 62679544 C T LPHN3 Nonsense_Mutation p.Q405* 0.33 TCGA-XE-AANI-01 6 168461656 168461656 A C FRMD1 Missense_Mutation p.V376G 0.22 tolerated(0.36) benign(0) TCGA-XE-AANI-01 6 42582883 42582894 AGACTGATGCTT - UBR2 In_Frame_Del p.R354_L357del 0.16 TCGA-XE-AANI-01 6 42985044 42985044 T G KLHDC3 Nonsense_Mutation p.Y38* 0.25 TCGA-XE-AANI-01 6 85473885 85473885 T A TBX18 Silent p.R5R 0.21 TCGA-XE-AANI-01 6 88251684 88251684 A - RARS2 Frame_Shift_Del p.F188Lfs*32 0.17 TCGA-XE-AANI-01 7 55273210 55273210 C T EGFR Missense_Mutation p.P1178L 0.23 deleterious(0) probably_damaging(0.999) TCGA-XE-AANI-01 7 91793802 91793802 G C LRRD1 Missense_Mutation p.L239V 0.17 deleterious(0) probably_damaging(0.998) TCGA-XE-AANI-01 8 72987612 72987612 A T TRPA1 Silent p.P11P 0.14 TCGA-XE-AANI-01 8 8749747 8749747 C T MFHAS1 Silent p.R274R 0.17 TCGA-XE-AANI-01 8 88363932 88363932 T C CNBD1 Silent p.N354N 0.15 TCGA-XE-AANI-01 9 123794397 123794397 C T C5 Missense_Mutation p.E221K 0.42 deleterious(0) possibly_damaging(0.78) TCGA-XE-AANI-01 X 53579361 53579361 G T HUWE1 Missense_Mutation p.S2931Y 0.38 possibly_damaging(0.608) TCGA-XE-AANJ-01 10 49951285 49951285 G T WDFY4 Silent p.L717L 0.04 TCGA-XE-AANJ-01 10 95987141 95987141 C T PLCE1 Missense_Mutation p.H630Y 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-XE-AANJ-01 12 109724470 109724470 G T FOXN4 Missense_Mutation p.H226N 0.11 tolerated(0.08) probably_damaging(0.928) TCGA-XE-AANJ-01 12 50232705 50232705 C T BCDIN3D Missense_Mutation p.D110N 0.06 deleterious(0) probably_damaging(0.999) TCGA-XE-AANJ-01 16 88501926 88501926 G C ZNF469 Missense_Mutation p.G2655A 0.44 possibly_damaging(0.883) TCGA-XE-AANJ-01 19 35790585 35790585 G T MAG Nonsense_Mutation p.E182* 0.21 TCGA-XE-AANJ-01 19 42912431 42912431 C A LIPE Missense_Mutation p.G488V 0.26 tolerated(0.09) probably_damaging(0.996) TCGA-XE-AANJ-01 1 10464289 10464289 G T PGD Silent p.G134G 0.06 TCGA-XE-AANJ-01 1 206905468 206905468 G C MAPKAPK2 Intron 0.17 TCGA-XE-AANJ-01 20 33891797 33891797 T A UQCC1 Nonsense_Mutation p.K281* 0.23 TCGA-XE-AANJ-01 20 35443918 35443918 G T SOGA1 Silent p.R643R 0.05 TCGA-XE-AANJ-01 22 17589771 17589771 G A IL17RA Silent p.S554S 0.16 TCGA-XE-AANJ-01 2 108488726 108488726 G T RGPD4 Silent p.G1422G 0.22 TCGA-XE-AANJ-01 2 191843624 191843624 C T STAT1 Missense_Mutation p.A611T 0.22 deleterious(0) possibly_damaging(0.782) TCGA-XE-AANJ-01 2 25976403 25976403 C T ASXL2 Missense_Mutation p.S381N 0.17 tolerated(0.27) possibly_damaging(0.739) TCGA-XE-AANJ-01 3 142840363 142840363 C T CHST2 Silent p.S235S 0.20 TCGA-XE-AANJ-01 3 182665069 182665069 G T DCUN1D1 Missense_Mutation p.F219L 0.09 deleterious(0) probably_damaging(0.976) TCGA-XE-AANJ-01 6 43100169 43100169 C T PTK7 Silent p.D332D 0.22 TCGA-XE-AANJ-01 7 149500591 149500591 G T SSPO RNA 0.07 TCGA-XE-AANJ-01 9 109689998 109689998 C A ZNF462 Missense_Mutation p.Q1269K 0.71 possibly_damaging(0.777) TCGA-XE-AANJ-01 9 20363367 20363367 C T MLLT3 Intron 0.35 TCGA-XE-AANR-01 10 103577931 103577931 G A MGEA5 5'UTR 0.12 TCGA-XE-AANR-01 11 13743357 13743357 C T FAR1 Missense_Mutation p.T403I 0.33 deleterious(0.04) benign(0.396) TCGA-XE-AANR-01 13 95858899 95858899 G T ABCC4 Missense_Mutation p.R350S 0.33 tolerated(0.22) benign(0.042) TCGA-XE-AANR-01 15 43335557 43335557 T C UBR1 Missense_Mutation p.K569E 0.20 tolerated(0.51) benign(0.001) TCGA-XE-AANR-01 17 38318013 38318013 A G CASC3 Missense_Mutation p.E102G 0.20 deleterious(0.01) benign(0.051) TCGA-XE-AANR-01 19 1014364 1014364 G A TMEM259 Missense_Mutation p.R112C 0.22 deleterious(0) probably_damaging(1) TCGA-XE-AANR-01 19 42874860 42874860 A T MEGF8 Missense_Mutation p.N2271I 0.24 tolerated(0.1) benign(0.009) TCGA-XE-AANR-01 1 10355744 10355744 G A KIF1B Missense_Mutation p.R520H 0.05 tolerated(0.06) probably_damaging(0.995) TCGA-XE-AANR-01 1 110596376 110596376 G A STRIP1 Missense_Mutation p.A786T 0.32 tolerated(0.64) benign(0.002) TCGA-XE-AANR-01 1 158154135 158154135 C G CD1D 3'UTR 0.29 TCGA-XE-AANR-01 1 17607185 17607185 G A PADI3 Missense_Mutation p.R552H 0.11 deleterious(0) probably_damaging(0.989) TCGA-XE-AANR-01 20 17617269 17617269 C T RRBP1 Missense_Mutation p.A331T 0.09 deleterious(0.04) possibly_damaging(0.682) TCGA-XE-AANR-01 2 15557681 15557681 G A NBAS Silent p.D911D 0.23 TCGA-XE-AANR-01 3 149688706 149688706 C T PFN2 5'UTR 0.12 TCGA-XE-AANR-01 4 55599321 55599321 A T KIT Missense_Mutation p.D816V 0.59 deleterious(0) probably_damaging(0.977) TCGA-XE-AANR-01 5 153149891 153149891 G A GRIA1 Missense_Mutation p.R739Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-XE-AANR-01 5 167995711 167995711 C T PANK3 Silent p.L107L 0.06 TCGA-XE-AANR-01 7 107115390 107115390 G A GPR22 Silent p.R295R 0.20 TCGA-XE-AANR-01 9 128003574 128003574 G A HSPA5 5'UTR 0.33 TCGA-XE-AANV-01 10 112559661 112559661 G A RBM20 Silent p.K595K 0.20 TCGA-XE-AANV-01 10 8115773 8115773 A C GATA3 Missense_Mutation p.K374N 0.21 deleterious(0) possibly_damaging(0.469) TCGA-XE-AANV-01 14 105353593 105353593 A G CEP170B Missense_Mutation p.Q1006R 0.19 tolerated(1) benign(0.001) TCGA-XE-AANV-01 15 41854893 41854893 C T TYRO3 Missense_Mutation p.S186F 0.13 deleterious(0.03) possibly_damaging(0.511) TCGA-XE-AANV-01 16 614076 614076 C T C16orf11 Missense_Mutation p.A261V 0.27 tolerated(0.27) benign(0.005) TCGA-XE-AANV-01 17 7366300 7366300 G T ZBTB4 Nonsense_Mutation p.Y667* 0.08 TCGA-XE-AANV-01 1 22418115 22418115 T C CDC42 3'UTR 0.13 TCGA-XE-AANV-01 1 248737452 248737452 G C OR2T34 Missense_Mutation p.L203V 0.17 tolerated(0.4) benign(0.015) TCGA-XE-AANV-01 1 97839132 97839132 G T DPYD Silent p.G681G 0.15 TCGA-XE-AANV-01 20 47273634 47273634 G T PREX1 Missense_Mutation p.N689K 0.07 tolerated(0.75) benign(0.046) TCGA-XE-AANV-01 4 55593667 55593667 A G KIT Missense_Mutation p.Y578C 0.28 deleterious(0) probably_damaging(0.981) TCGA-XE-AANV-01 4 55599348 55599348 T A KIT Missense_Mutation p.V825D 0.34 deleterious(0) probably_damaging(0.999) TCGA-XE-AANV-01 4 99812429 99812429 C T EIF4E Silent p.L60L 0.18 TCGA-XE-AANV-01 5 89949379 89949379 T - GPR98 Frame_Shift_Del p.F1330Lfs*4 0.14 TCGA-XE-AANV-01 9 18892551 18892551 A G ADAMTSL1 Missense_Mutation p.N1603S 0.17 tolerated(0.33) possibly_damaging(0.458) TCGA-XE-AANV-01 X 75398025 75398025 G T PBDC1 3'UTR 0.13 TCGA-XE-AAO3-01 15 63446006 63446006 A G RPS27L 3'UTR 0.27 TCGA-XE-AAO3-01 16 4943298 4943300 CTC - PPL In_Frame_Del p.E522del 0.30 TCGA-XE-AAO3-01 16 67218711 67218711 G A EXOC3L1 Silent p.G636G 0.17 TCGA-XE-AAO3-01 17 29195417 29195417 T A ATAD5 Missense_Mutation p.D1100E 0.27 tolerated(0.24) benign(0.005) TCGA-XE-AAO3-01 17 36830085 36830085 C T C17orf96 Missense_Mutation p.A222T 0.23 tolerated_low_confidence(0.33) possibly_damaging(0.682) TCGA-XE-AAO3-01 19 36050035 36050035 A G ATP4A Missense_Mutation p.L372P 0.13 deleterious(0) probably_damaging(0.999) TCGA-XE-AAO3-01 19 53015473 53015473 G A ZNF578 3'Flank 0.20 TCGA-XE-AAO3-01 2 143685255 143685255 G A KYNU Silent p.K106K 0.18 TCGA-XE-AAO3-01 2 220117971 220117971 G T TUBA4A Intron 0.16 TCGA-XE-AAO3-01 2 24247062 24247062 G C MFSD2B Missense_Mutation p.A471P 0.28 deleterious(0.04) possibly_damaging(0.811) TCGA-XE-AAO3-01 2 25655860 25655860 A T DTNB Missense_Mutation p.L451Q 0.21 deleterious(0) probably_damaging(0.976) TCGA-XE-AAO3-01 5 10415633 10415633 C G MARCH6 Missense_Mutation p.T667R 0.35 tolerated(0.34) benign(0.266) TCGA-XE-AAO3-01 6 168708534 168708534 C T DACT2 Missense_Mutation p.V635M 0.23 tolerated(0.13) benign(0.008) TCGA-XE-AAO3-01 6 31936112 31936112 C T SKIV2L Missense_Mutation p.P956S 0.21 tolerated(0.16) probably_damaging(0.995) TCGA-XE-AAO3-01 6 86346826 86346826 C T SYNCRIP Silent p.E175E 0.24 TCGA-XE-AAO3-01 7 142919837 142919838 AC - TAS2R40 Frame_Shift_Del p.T224Pfs*48 0.17 TCGA-XE-AAO3-01 7 149486702 149486702 C T SSPO RNA 0.24 TCGA-XE-AAO3-01 8 100733195 100733195 C T VPS13B Missense_Mutation p.L2349F 0.17 tolerated(0.41) possibly_damaging(0.86) TCGA-XE-AAO4-01 11 14316390 14316390 T A RRAS2 Missense_Mutation p.Q72L 0.39 deleterious(0) benign(0.361) TCGA-XE-AAO4-01 11 66948811 66948811 C T KDM2A Nonsense_Mutation p.Q68* 0.20 TCGA-XE-AAO4-01 12 15722430 15722430 G C PTPRO Missense_Mutation p.E943Q 0.10 tolerated(0.29) benign(0.024) TCGA-XE-AAO4-01 13 50589360 50589360 G T TRIM13 3'Flank 0.21 TCGA-XE-AAO4-01 14 70925910 70925910 G A ADAM21 Missense_Mutation p.C565Y 0.21 deleterious(0) probably_damaging(1) TCGA-XE-AAO4-01 14 78197400 78197400 C G SNW1 Missense_Mutation p.E322Q 0.18 tolerated(0.3) possibly_damaging(0.457) TCGA-XE-AAO4-01 14 91366534 91366534 C G RPS6KA5 Missense_Mutation p.G433R 0.16 deleterious(0) probably_damaging(1) TCGA-XE-AAO4-01 16 85814060 85814060 G T EMC8 Missense_Mutation p.T133K 0.11 deleterious(0.01) possibly_damaging(0.755) TCGA-XE-AAO4-01 17 21094571 21094571 C T DHRS7B 3'UTR 0.08 TCGA-XE-AAO4-01 17 28382962 28382962 A C EFCAB5 Missense_Mutation p.I751L 0.17 deleterious(0.01) benign(0.134) TCGA-XE-AAO4-01 17 33310332 33310332 C T LIG3 Missense_Mutation p.A103V 0.13 deleterious(0) probably_damaging(0.944) TCGA-XE-AAO4-01 17 4863123 4863123 T C SPAG7 Missense_Mutation p.H169R 0.24 deleterious(0.04) possibly_damaging(0.55) TCGA-XE-AAO4-01 17 66339899 66339899 C G ARSG Missense_Mutation p.L125V 0.16 deleterious(0) probably_damaging(0.998) TCGA-XE-AAO4-01 19 1826917 1826917 G C REXO1 Missense_Mutation p.T624S 0.16 tolerated(0.09) probably_damaging(0.993) TCGA-XE-AAO4-01 19 31040045 31040045 C A ZNF536 Silent p.S1173S 0.12 TCGA-XE-AAO4-01 19 36224181 36224181 C G KMT2B Missense_Mutation p.P2244R 0.23 possibly_damaging(0.804) TCGA-XE-AAO4-01 19 36278481 36278481 C T ARHGAP33 Missense_Mutation p.A844V 0.09 tolerated_low_confidence(0.05) benign(0.008) TCGA-XE-AAO4-01 19 3905468 3905468 G T ATCAY Missense_Mutation p.R58L 0.12 tolerated(0.22) benign(0.249) TCGA-XE-AAO4-01 19 41354213 41354213 C - CYP2A6 Frame_Shift_Del p.D189Tfs*16 0.12 TCGA-XE-AAO4-01 19 49208961 49208961 C G FUT2 3'UTR 0.21 TCGA-XE-AAO4-01 1 120468323 120468323 C T NOTCH2 Silent p.R1372R 0.20 TCGA-XE-AAO4-01 1 151735988 151735988 A C OAZ3 Intron 0.23 TCGA-XE-AAO4-01 1 31441219 31441219 G A PUM1 Silent p.L543L 0.14 TCGA-XE-AAO4-01 1 50666911 50666911 G A ELAVL4 3'UTR 0.06 TCGA-XE-AAO4-01 20 60921757 60921757 C A LAMA5 Missense_Mutation p.G391V 0.11 probably_damaging(1) TCGA-XE-AAO4-01 21 30257631 30257631 G A N6AMT1 Missense_Mutation p.H13Y 0.11 probably_damaging(0.961) TCGA-XE-AAO4-01 21 37833547 37833547 G T CLDN14 Missense_Mutation p.N149K 0.30 deleterious(0.01) possibly_damaging(0.675) TCGA-XE-AAO4-01 2 198283859 198283859 T A SF3B1 Intron 0.16 TCGA-XE-AAO4-01 2 207432037 207432037 G T ADAM23 Missense_Mutation p.R495S 0.13 deleterious(0.01) possibly_damaging(0.803) TCGA-XE-AAO4-01 2 26410715 26410715 C T GAREML Silent p.G738G 0.14 TCGA-XE-AAO4-01 2 72968493 72968493 C G EXOC6B Missense_Mutation p.Q73H 0.20 deleterious(0) possibly_damaging(0.744) TCGA-XE-AAO4-01 4 110745697 110745697 A G GAR1 3'UTR 0.23 TCGA-XE-AAO4-01 4 1244599 1244599 G A CTBP1 5'Flank 0.18 TCGA-XE-AAO4-01 4 2010671 2010671 C T NELFA Missense_Mutation p.E17K 0.18 tolerated(0.1) benign(0.077) TCGA-XE-AAO4-01 7 102920486 102920486 T C DPY19L2P2 RNA 0.10 TCGA-XE-AAO4-01 7 44555488 44555488 A T NPC1L1 Missense_Mutation p.I1264N 0.17 deleterious(0) probably_damaging(0.997) TCGA-XE-AAO4-01 7 74105442 74105442 T C GTF2I Silent p.Y79Y 0.11 TCGA-XE-AAO4-01 8 144406735 144406735 C T TOP1MT Missense_Mutation p.V246I 0.12 deleterious(0) probably_damaging(0.983) TCGA-XE-AAO4-01 8 145948392 145948392 A G ZNF251 Missense_Mutation p.F218S 0.13 deleterious(0.02) possibly_damaging(0.688) TCGA-XE-AAO4-01 8 64098924 64098924 C T YTHDF3 Missense_Mutation p.L118F 0.26 tolerated(0.25) probably_damaging(0.947) TCGA-XE-AAO4-01 9 125551981 125551981 G A OR5C1 Missense_Mutation p.G257E 0.10 deleterious(0) probably_damaging(1) TCGA-XE-AAO4-01 9 33344183 33344183 C T NFX1 Missense_Mutation p.P781S 0.19 deleterious(0) possibly_damaging(0.829) TCGA-XE-AAO4-01 9 38395924 38395924 C A ALDH1B1 Missense_Mutation p.T60N 0.18 deleterious(0.01) benign(0.018) TCGA-XE-AAO4-01 X 128781746 128781746 G T APLN 3'UTR 0.32 TCGA-XE-AAO4-01 X 140994527 140994527 C T MAGEC1 Missense_Mutation p.P446L 0.28 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-XE-AAO4-01 X 24833115 24833115 C T POLA1 Missense_Mutation p.L1100F 0.30 deleterious(0) probably_damaging(0.986) TCGA-XE-AAO4-01 X 36162793 36162793 C A CHDC2 Missense_Mutation p.T459K 0.32 deleterious_low_confidence(0.03) benign(0.007) TCGA-XE-AAO6-01 10 3190094 3190094 C T PITRM1 Intron 0.17 TCGA-XE-AAO6-01 11 105782776 105782776 T A GRIA4 Intron 0.08 TCGA-XE-AAO6-01 12 2786957 2786957 A C CACNA1C Missense_Mutation p.D1720A 0.10 deleterious(0) possibly_damaging(0.88) TCGA-XE-AAO6-01 14 107048842 107048842 G T IGHV3-53 Missense_Mutation p.P60T 0.07 deleterious_low_confidence(0) benign(0.316) TCGA-XE-AAO6-01 14 77493785 77493785 C T IRF2BPL Silent p.Q117Q 0.25 TCGA-XE-AAO6-01 15 35261841 35261841 G A AQR 5'UTR 0.16 TCGA-XE-AAO6-01 17 18167776 18167776 C G MIEF2 Missense_Mutation p.R366G 0.19 tolerated(0.33) probably_damaging(0.954) TCGA-XE-AAO6-01 17 9683343 9683343 G A DHRS7C Missense_Mutation p.P94S 0.17 deleterious(0.01) probably_damaging(0.951) TCGA-XE-AAO6-01 19 21688553 21688553 G A ZNF429 5'UTR 0.19 TCGA-XE-AAO6-01 19 55870472 55870472 C A FAM71E2 Silent p.P588P 0.12 TCGA-XE-AAO6-01 19 8367841 8367841 C T CD320 Missense_Mutation p.G176R 0.23 deleterious(0.04) benign(0.346) TCGA-XE-AAO6-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.18 tolerated(0.06) benign(0.006) TCGA-XE-AAO6-01 1 153233515 153233515 C T LOR Silent p.G30G 0.05 TCGA-XE-AAO6-01 1 154461552 154461554 CTT - SHE In_Frame_Del p.K333del 0.14 TCGA-XE-AAO6-01 1 157963501 157963501 C G KIRREL Missense_Mutation p.S12C 0.13 tolerated(0.12) benign(0) TCGA-XE-AAO6-01 1 220340992 220340992 C T RAB3GAP2 Silent p.K944K 0.17 TCGA-XE-AAO6-01 1 44057100 44057100 G A PTPRF Silent p.A469A 0.21 TCGA-XE-AAO6-01 1 53676901 53676902 GA - CPT2 Frame_Shift_Del p.E519Afs*8 0.27 TCGA-XE-AAO6-01 1 67313188 67313188 G A WDR78 Missense_Mutation p.R424C 0.19 deleterious(0) probably_damaging(0.997) TCGA-XE-AAO6-01 22 24718079 24718079 A T SPECC1L Silent p.I377I 0.18 TCGA-XE-AAO6-01 2 211168336 211168336 G A MYL1 Intron 0.12 TCGA-XE-AAO6-01 2 26203245 26203245 G C KIF3C Nonsense_Mutation p.Y514* 0.15 TCGA-XE-AAO6-01 3 179439252 179439252 G C USP13 Missense_Mutation p.Q321H 0.19 deleterious(0.03) possibly_damaging(0.848) TCGA-XE-AAO6-01 5 6668794 6668794 T C SRD5A1 3'UTR 0.25 TCGA-XE-AAO6-01 5 98239547 98239547 C T CHD1 Silent p.Q107Q 0.06 TCGA-XE-AAO6-01 6 43034061 43034061 G A KLC4 Missense_Mutation p.A215T 0.25 tolerated(0.31) benign(0) TCGA-XE-AAO6-01 7 139091951 139091951 G A LUC7L2 Missense_Mutation p.S247N 0.13 tolerated(0.07) possibly_damaging(0.574) TCGA-XE-AAO6-01 7 150501507 150501507 G A TMEM176A Missense_Mutation p.A205T 0.16 tolerated(0.14) possibly_damaging(0.807) TCGA-XE-AAO6-01 7 35674032 35674033 - T HERPUD2 Frame_Shift_Ins p.A317Sfs*7 0.12 TCGA-XE-AAOB-01 10 79163700 79163700 C T KCNMA1 Missense_Mutation p.A154T 0.11 tolerated(0.55) benign(0.043) TCGA-XE-AAOB-01 10 99023294 99023294 A C ARHGAP19 Missense_Mutation p.L166V 0.06 deleterious(0.02) possibly_damaging(0.461) TCGA-XE-AAOB-01 12 13724765 13724765 T A GRIN2B Missense_Mutation p.D715V 0.09 tolerated(0.11) benign(0.011) TCGA-XE-AAOB-01 12 50529846 50529846 G - CERS5 Frame_Shift_Del p.L215* 0.10 TCGA-XE-AAOB-01 12 66345565 66345565 A G HMGA2 Intron 0.50 TCGA-XE-AAOB-01 17 7139505 7139506 AG - PHF23 Frame_Shift_Del p.S247* 0.13 TCGA-XE-AAOB-01 17 8439201 8439201 G A MYH10 Missense_Mutation p.P552S 0.14 probably_damaging(0.999) TCGA-XE-AAOB-01 1 186056429 186056429 G A HMCN1 Missense_Mutation p.E3043K 0.17 probably_damaging(0.994) TCGA-XE-AAOB-01 2 223507631 223507631 T C FARSB Missense_Mutation p.N70D 0.15 deleterious(0) probably_damaging(0.998) TCGA-XE-AAOB-01 3 49060774 49060774 G C NDUFAF3 3'UTR 0.19 TCGA-XE-AAOB-01 5 139819758 139819758 G A ANKHD1 Silent p.L224L 0.16 TCGA-XE-AAOB-01 7 126249528 126249528 A G GRM8 Missense_Mutation p.F461S 0.12 deleterious(0) probably_damaging(0.98) TCGA-XE-AAOB-01 7 154876031 154876031 T C HTR5A Missense_Mutation p.L303P 0.16 deleterious(0) benign(0.427) TCGA-XE-AAOB-01 7 76112033 76112033 C T DTX2 Silent p.H159H 0.18 TCGA-XE-AAOB-01 8 2944635 2944635 G A CSMD1 Silent p.L2486L 0.05 TCGA-XE-AAOB-01 9 134343013 134343013 C A PRRC2B Missense_Mutation p.S595Y 0.16 deleterious(0.02) possibly_damaging(0.492) TCGA-XE-AAOC-01 12 104333319 104333319 G A HSP90B1 Missense_Mutation p.M336I 0.10 tolerated(0.41) benign(0.012) TCGA-XE-AAOC-01 12 432911 432911 C T KDM5A Missense_Mutation p.V669I 0.19 deleterious(0.01) benign(0.033) TCGA-XE-AAOC-01 14 81227824 81227824 G A CEP128 Missense_Mutation p.A837V 0.10 tolerated(0.09) benign(0.053) TCGA-XE-AAOC-01 16 67762301 67762301 G T RANBP10 Missense_Mutation p.S489Y 0.32 deleterious(0.04) possibly_damaging(0.672) TCGA-XE-AAOC-01 18 19153599 19153600 CA - ESCO1 Frame_Shift_Del p.V402Afs*4 0.12 TCGA-XE-AAOC-01 18 50278479 50278479 C T DCC Silent p.A49A 0.19 TCGA-XE-AAOC-01 1 117644003 117644006 TTTG - TTF2 Frame_Shift_Del p.C1118Rfs*4 0.22 TCGA-XE-AAOC-01 1 202710494 202710494 C A KDM5B Splice_Site p.X982_splice 0.22 TCGA-XE-AAOC-01 1 206781611 206781612 CA - EIF2D Frame_Shift_Del p.A134Hfs*21 0.18 TCGA-XE-AAOC-01 1 224370966 224370966 C T DEGS1 5'UTR 0.52 TCGA-XE-AAOC-01 1 227335123 227335123 G A CDC42BPA Silent p.Y277Y 0.25 TCGA-XE-AAOC-01 20 16385486 16385486 G A KIF16B Silent p.L586L 0.15 TCGA-XE-AAOC-01 20 3673381 3673381 C T SIGLEC1 Missense_Mutation p.E1273K 0.12 deleterious(0) probably_damaging(1) TCGA-XE-AAOC-01 20 56137903 56137903 T C PCK1 Silent p.D186D 0.24 TCGA-XE-AAOC-01 22 32111642 32111642 G A PRR14L Missense_Mutation p.S728L 0.41 deleterious(0.03) probably_damaging(0.994) TCGA-XE-AAOC-01 2 171573375 171573375 C T SP5 Missense_Mutation p.P220S 0.08 tolerated(0.09) possibly_damaging(0.641) TCGA-XE-AAOC-01 2 178937302 178937302 G A PDE11A 5'UTR 0.29 TCGA-XE-AAOC-01 2 198949565 198949565 G A PLCL1 Missense_Mutation p.V442I 0.32 tolerated(0.59) benign(0.078) TCGA-XE-AAOC-01 2 219103519 219103519 A C ARPC2 Missense_Mutation p.E134A 0.29 tolerated(0.25) benign(0.003) TCGA-XE-AAOC-01 2 232576664 232576664 A G PTMA Missense_Mutation p.E62G 0.23 tolerated(0.37) unknown(0) TCGA-XE-AAOC-01 5 145719235 145719235 C A POU4F3 Missense_Mutation p.T82N 0.44 tolerated(0.1) possibly_damaging(0.879) TCGA-XE-AAOC-01 5 168678411 168678411 G T SLIT3 Missense_Mutation p.L84I 0.08 tolerated(0.06) benign(0.341) TCGA-XE-AAOC-01 5 78251240 78251240 T C ARSB Missense_Mutation p.Q259R 0.40 tolerated(0.38) benign(0.002) TCGA-XE-AAOC-01 6 131931259 131931259 G A MED23 Missense_Mutation p.S335L 0.66 deleterious(0) probably_damaging(0.994) TCGA-XE-AAOC-01 6 26271526 26271526 G A HIST1H3G Silent p.S29S 0.55 TCGA-XE-AAOC-01 7 72861685 72861685 A G BAZ1B Silent p.S1251S 0.43 TCGA-XE-AAOC-01 9 32632961 32632961 G A TAF1L Missense_Mutation p.R873C 0.31 deleterious(0) probably_damaging(0.973) TCGA-XE-AAOD-01 16 2358479 2358479 G A ABCA3 Silent p.A419A 0.20 TCGA-XE-AAOD-01 17 71232215 71232215 A G C17orf80 Silent p.Q198Q 0.14 TCGA-XE-AAOD-01 17 74046599 74046599 G T SRP68 Missense_Mutation p.S329R 0.07 tolerated(0.15) benign(0.232) TCGA-XE-AAOD-01 17 76047438 76047438 C T TNRC6C Silent p.T765T 0.07 TCGA-XE-AAOD-01 22 21343966 21344002 GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - LZTR1 Splice_Site p.X217_splice 0.30 TCGA-XE-AAOD-01 3 49139869 49139869 G A QARS Silent p.L185L 0.10 TCGA-XE-AAOD-01 4 39864534 39864535 - A PDS5A Frame_Shift_Ins p.I976Yfs*9 0.14 TCGA-XE-AAOD-01 5 114860823 114860823 C T FEM1C Missense_Mutation p.A346T 0.06 deleterious(0) probably_damaging(0.992) TCGA-XE-AAOD-01 6 7883446 7883446 C T TXNDC5 Silent p.E410E 0.04 TCGA-XE-AAOD-01 7 148801463 148801463 G T ZNF425 Nonsense_Mutation p.C500* 0.09 TCGA-XE-AAOD-01 7 99425693 99425693 G T CYP3A43 5'Flank 0.10 TCGA-XE-AAOD-01 X 118602491 118602491 G A SLC25A5 Missense_Mutation p.A5T 0.15 tolerated(0.11) benign(0.003) TCGA-XE-AAOD-01 X 128886308 128886308 A G XPNPEP2 Missense_Mutation p.E335G 0.19 tolerated(0.14) benign(0.003) TCGA-XE-AAOD-01 X 70793562 70793562 A G OGT Missense_Mutation p.Y1020C 0.18 deleterious(0) probably_damaging(0.986) TCGA-XE-AAOF-01 11 93796882 93796882 G - HEPHL1 Frame_Shift_Del p.E209Kfs*4 0.18 TCGA-XE-AAOF-01 12 94631464 94631464 C T PLXNC1 Missense_Mutation p.P669S 0.18 tolerated(0.08) possibly_damaging(0.836) TCGA-XE-AAOF-01 15 42839488 42839488 C T LRRC57 Missense_Mutation p.V155I 0.17 tolerated(0.12) benign(0.016) TCGA-XE-AAOF-01 15 45399065 45399065 G A DUOX2 Missense_Mutation p.A599V 0.20 deleterious(0.02) benign(0.103) TCGA-XE-AAOF-01 17 40500474 40500474 G C STAT3 Missense_Mutation p.L21V 0.15 deleterious(0) probably_damaging(0.967) TCGA-XE-AAOF-01 17 5308484 5308484 C T NUP88 Missense_Mutation p.A313T 0.12 deleterious(0.01) possibly_damaging(0.582) TCGA-XE-AAOF-01 17 60005347 60005347 A G INTS2 5'UTR 0.10 TCGA-XE-AAOF-01 19 17988612 17988612 G C SLC5A5 Missense_Mutation p.G260A 0.22 tolerated(0.08) probably_damaging(1) TCGA-XE-AAOF-01 19 1953897 1953897 G A CSNK1G2 Intron 0.09 TCGA-XE-AAOF-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.15 deleterious(0.01) benign(0.045) TCGA-XE-AAOF-01 1 3740039 3740039 C T CEP104 Missense_Mutation p.A818T 0.11 deleterious(0.03) probably_damaging(0.965) TCGA-XE-AAOF-01 1 39818746 39818746 C T MACF1 Missense_Mutation p.S1694L 0.10 benign(0.008) TCGA-XE-AAOF-01 21 47700450 47700450 G C MCM3AP Missense_Mutation p.H495D 0.11 tolerated(0.08) possibly_damaging(0.579) TCGA-XE-AAOF-01 2 37094974 37094974 A G STRN Silent p.Y510Y 0.17 TCGA-XE-AAOF-01 2 42836672 42836672 A G MTA3 Missense_Mutation p.R89G 0.09 deleterious(0.02) benign(0.379) TCGA-XE-AAOF-01 2 44457507 44457507 T C PPM1B Intron 0.07 TCGA-XE-AAOF-01 3 156232196 156232196 G A KCNAB1 Silent p.A234A 0.13 TCGA-XE-AAOF-01 3 52537884 52537884 G T STAB1 Missense_Mutation p.A330S 0.07 tolerated(0.22) possibly_damaging(0.751) TCGA-XE-AAOF-01 4 55599320 55599320 G C KIT Missense_Mutation p.D816H 0.41 deleterious(0.01) benign(0.292) TCGA-XE-AAOF-01 5 137729063 137729063 T C KDM3B Splice_Site p.X944_splice 0.21 TCGA-XE-AAOF-01 5 140605281 140605281 A G PCDHB14 Missense_Mutation p.H735R 0.15 deleterious_low_confidence(0.03) benign(0.145) TCGA-XE-AAOF-01 5 140605294 140605294 G A PCDHB14 Silent p.V739V 0.22 TCGA-XE-AAOF-01 5 140699523 140699523 C G TAF7 Missense_Mutation p.R30T 0.30 deleterious(0.01) possibly_damaging(0.601) TCGA-XE-AAOF-01 6 145095443 145095443 C T UTRN Missense_Mutation p.R2859C 0.12 deleterious(0) probably_damaging(0.999) TCGA-XE-AAOF-01 9 103340547 103340547 C A MURC Missense_Mutation p.A41D 0.12 deleterious(0) probably_damaging(0.999) TCGA-XE-AAOJ-01 10 37442535 37442535 T G ANKRD30A Missense_Mutation p.C525W 0.06 deleterious(0.02) possibly_damaging(0.869) TCGA-XE-AAOJ-01 10 37478430 37478430 T G ANKRD30A Missense_Mutation p.C763W 0.20 deleterious(0.01) probably_damaging(0.971) TCGA-XE-AAOJ-01 11 57427264 57427264 C T CLP1 Nonsense_Mutation p.Q106* 0.29 TCGA-XE-AAOJ-01 12 10999711 10999711 A G PRR4 Missense_Mutation p.F119S 0.09 deleterious_low_confidence(0) possibly_damaging(0.504) TCGA-XE-AAOJ-01 12 9258885 9258885 A C A2M Missense_Mutation p.S351A 0.06 tolerated(0.31) benign(0.041) TCGA-XE-AAOJ-01 13 52518252 52518252 C T ATP7B Missense_Mutation p.C1079Y 0.61 deleterious(0) probably_damaging(1) TCGA-XE-AAOJ-01 15 40660083 40660083 C T DISP2 Silent p.G590G 0.31 TCGA-XE-AAOJ-01 17 18286644 18286644 C A EVPLL Missense_Mutation p.D244E 0.33 tolerated(0.21) possibly_damaging(0.893) TCGA-XE-AAOJ-01 17 18332331 18332331 C T KRT17P2 RNA 0.29 TCGA-XE-AAOJ-01 19 1496340 1496340 G A REEP6 Silent p.L135L 0.23 TCGA-XE-AAOJ-01 19 54668249 54668249 C T TMC4 Silent p.L350L 0.33 TCGA-XE-AAOJ-01 1 156595122 156595122 C T HAPLN2 Silent p.G323G 0.37 TCGA-XE-AAOJ-01 1 62979205 62979205 C A DOCK7 Nonsense_Mutation p.E1367* 0.29 TCGA-XE-AAOJ-01 1 70504317 70504317 C - LRRC7 Frame_Shift_Del p.N900Ifs*36 0.23 TCGA-XE-AAOJ-01 21 33044299 33044310 GCTGTGGCTGCT - SCAF4 In_Frame_Del p.Q949_Q952del 0.38 TCGA-XE-AAOJ-01 22 17584446 17584446 G T IL17RA Silent p.G275G 0.08 TCGA-XE-AAOJ-01 22 30416250 30416250 C T MTMR3 Missense_Mutation p.L868F 0.40 tolerated_low_confidence(0.3) benign(0.444) TCGA-XE-AAOJ-01 22 42538017 42538017 G A NDUFA6-AS1 3'Flank 0.20 TCGA-XE-AAOJ-01 2 15731871 15731871 C A DDX1 5'UTR 0.50 TCGA-XE-AAOJ-01 2 224903260 224903260 C A SERPINE2 5'UTR 0.28 TCGA-XE-AAOJ-01 2 32476309 32476309 G T NLRC4 Silent p.A208A 0.31 TCGA-XE-AAOJ-01 2 84852104 84852104 A C DNAH6 Missense_Mutation p.K1478Q 0.29 deleterious(0) probably_damaging(1) TCGA-XE-AAOJ-01 3 48663665 48663665 C T SLC26A6 Missense_Mutation p.D751N 0.31 tolerated(0.49) benign(0.001) TCGA-XE-AAOJ-01 4 96761797 96761797 G A PDHA2 Missense_Mutation p.G166S 0.40 deleterious(0) probably_damaging(0.993) TCGA-XE-AAOJ-01 7 48654898 48654898 C G ABCA13 Missense_Mutation p.A4921G 0.33 probably_damaging(0.992) TCGA-XE-AAOJ-01 X 106174057 106174057 C A CLDN2 3'UTR 0.19 TCGA-XE-AAOL-01 11 65648922 65648922 G T CTSW Missense_Mutation p.A73S 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-XE-AAOL-01 12 133779315 133779315 T C ZNF268 Missense_Mutation p.V348A 0.08 tolerated(0.73) benign(0.253) TCGA-XE-AAOL-01 12 52841624 52841624 G A KRT6B Silent p.V454V 0.12 TCGA-XE-AAOL-01 13 77574850 77574851 - T CLN5 Frame_Shift_Ins p.G326Wfs*26 0.20 TCGA-XE-AAOL-01 14 19988416 19988416 G A POTEM 3'UTR 0.42 TCGA-XE-AAOL-01 17 44382936 44382936 T G LRRC37A Missense_Mutation p.L939V 0.16 deleterious(0) probably_damaging(0.994) TCGA-XE-AAOL-01 19 1816021 1816021 G A REXO1 3'UTR 0.22 TCGA-XE-AAOL-01 19 54651887 54651887 C T CNOT3 Missense_Mutation p.P300L 0.19 deleterious(0.02) possibly_damaging(0.804) TCGA-XE-AAOL-01 1 117663450 117663450 C T TRIM45 Missense_Mutation p.S125N 0.24 tolerated(0.23) benign(0.005) TCGA-XE-AAOL-01 1 11982373 11982373 A G KIAA2013 Intron 0.59 TCGA-XE-AAOL-01 1 228335314 228335314 A G GUK1 Splice_Site p.X152_splice 0.37 TCGA-XE-AAOL-01 1 34209037 34209037 C A CSMD2 Missense_Mutation p.V633F 0.21 deleterious(0) possibly_damaging(0.74) TCGA-XE-AAOL-01 1 45271711 45271711 G A TCTEX1D4 Silent p.F210F 0.27 TCGA-XE-AAOL-01 21 38884387 38884387 T C DYRK1A Silent p.H615H 0.20 TCGA-XE-AAOL-01 22 38240344 38240344 C A ANKRD54 5'UTR 0.33 TCGA-XE-AAOL-01 2 102955396 102955396 A G IL1RL1 Missense_Mutation p.N54S 0.20 deleterious(0.03) probably_damaging(0.928) TCGA-XE-AAOL-01 2 54887225 54887225 G T SPTBN1 Intron 0.17 TCGA-XE-AAOL-01 5 135692524 135692524 C T TRPC7 Silent p.L184L 0.42 TCGA-XE-AAOL-01 5 156589359 156589359 A G FAM71B 3'UTR 0.12 TCGA-XE-AAOL-01 5 173043252 173043252 C T BOD1 Missense_Mutation p.G63D 0.39 deleterious(0) probably_damaging(1) TCGA-XE-AAOL-01 6 13977913 13977913 T G RNF182 Missense_Mutation p.L188W 0.19 deleterious(0) probably_damaging(0.986) TCGA-XE-AAOL-01 9 35792698 35792698 G A NPR2 Missense_Mutation p.G98D 0.30 deleterious(0) probably_damaging(0.993) TCGA-XY-A89B-01 10 28822948 28822948 C G WAC Missense_Mutation p.D21E 0.18 tolerated(0.09) benign(0) TCGA-XY-A89B-01 10 35930262 35930262 C G FZD8 Missense_Mutation p.E32D 0.28 tolerated(0.35) unknown(0) TCGA-XY-A89B-01 10 74994957 74994957 C T FAM149B1 Missense_Mutation p.H495Y 0.15 deleterious(0.01) benign(0.151) TCGA-XY-A89B-01 11 57309031 57309031 G A SMTNL1 Splice_Site p.X18_splice 0.16 TCGA-XY-A89B-01 11 66411186 66411186 T A RBM14-RBM4 Silent p.R201R 0.23 TCGA-XY-A89B-01 11 67022423 67022423 G A KDM2A Missense_Mutation p.C1129Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-XY-A89B-01 12 26636703 26636703 C T ITPR2 Silent p.K1980K 0.10 TCGA-XY-A89B-01 12 45567287 45567287 C T PLEKHA8P1 RNA 0.07 TCGA-XY-A89B-01 14 23847656 23847656 C T CMTM5 Silent p.F75F 0.18 TCGA-XY-A89B-01 15 60849111 60849111 T A RORA Missense_Mutation p.N79I 0.09 deleterious_low_confidence(0) benign(0.002) TCGA-XY-A89B-01 15 60849113 60849113 C T RORA Silent p.Q78Q 0.10 TCGA-XY-A89B-01 17 37879626 37879626 G C ERBB2 Missense_Mutation p.L667F 0.19 deleterious(0.01) benign(0.369) TCGA-XY-A89B-01 17 39727976 39727976 A G KRT9 Missense_Mutation p.F90S 0.16 tolerated_low_confidence(0.13) unknown(0) TCGA-XY-A89B-01 17 7574027 7574027 C A TP53 Missense_Mutation p.G334W 0.12 deleterious(0) probably_damaging(0.998) TCGA-XY-A89B-01 17 79632527 79632527 C T OXLD1 Missense_Mutation p.A50T 0.14 tolerated(0.42) benign(0.009) TCGA-XY-A89B-01 19 13879552 13879552 G A MRI1 Splice_Site p.X242_splice 0.12 TCGA-XY-A89B-01 19 19218819 19218819 T C SLC25A42 Missense_Mutation p.F205S 0.16 deleterious(0) probably_damaging(1) TCGA-XY-A89B-01 19 37239994 37239994 A G ZNF850 Missense_Mutation p.C650R 0.22 deleterious(0) probably_damaging(0.997) TCGA-XY-A89B-01 19 54646888 54646888 A C CNOT3 Missense_Mutation p.E20A 0.14 deleterious(0) probably_damaging(0.994) TCGA-XY-A89B-01 19 7675802 7675802 A T CAMSAP3 Missense_Mutation p.N372I 0.20 tolerated(0.32) probably_damaging(0.948) TCGA-XY-A89B-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.17 tolerated(0.06) benign(0.006) TCGA-XY-A89B-01 1 17318882 17318882 G A ATP13A2 Missense_Mutation p.P621S 0.11 tolerated(0.09) benign(0.113) TCGA-XY-A89B-01 1 21299496 21299496 G A EIF4G3 Missense_Mutation p.T148I 0.19 tolerated(0.07) possibly_damaging(0.529) TCGA-XY-A89B-01 1 28920547 28920547 G - RAB42 Frame_Shift_Del p.G81Vfs*119 0.15 TCGA-XY-A89B-01 1 39802896 39802896 C G MACF1 Intron 0.14 TCGA-XY-A89B-01 1 55474326 55474326 G T BSND 3'UTR 0.06 TCGA-XY-A89B-01 1 62916589 62916589 T G USP1 Missense_Mutation p.N765K 0.12 tolerated(0.57) possibly_damaging(0.642) TCGA-XY-A89B-01 21 45716314 45716314 T G AIRE Missense_Mutation p.S518A 0.12 tolerated(0.21) benign(0.029) TCGA-XY-A89B-01 21 45716315 45716315 C T AIRE Missense_Mutation p.S518F 0.12 deleterious(0) probably_damaging(0.95) TCGA-XY-A89B-01 21 45716316 45716316 C T AIRE Silent p.S518S 0.12 TCGA-XY-A89B-01 22 29916094 29916094 C G THOC5 Splice_Site p.X426_splice 0.18 TCGA-XY-A89B-01 2 182400167 182400167 C T ITGA4 Silent p.F1004F 0.13 TCGA-XY-A89B-01 4 159092431 159092431 T A FAM198B Missense_Mutation p.R33W 0.09 deleterious(0.01) possibly_damaging(0.827) TCGA-XY-A89B-01 5 118469192 118469192 T A DMXL1 Missense_Mutation p.S525T 0.19 deleterious(0.03) possibly_damaging(0.816) TCGA-XY-A89B-01 5 7396571 7396571 C A ADCY2 Silent p.V54V 0.14 TCGA-XY-A89B-01 6 34101114 34101114 G T GRM4 Missense_Mutation p.L54M 0.05 deleterious(0) probably_damaging(0.998) TCGA-XY-A89B-01 7 100799986 100799986 G A AP1S1 Missense_Mutation p.V39I 0.18 tolerated(0.71) benign(0.02) TCGA-XY-A89B-01 9 114132781 114132781 G A KIAA0368 Silent p.I1814I 0.11 TCGA-XY-A8S2-01 10 112352948 112352948 C T SMC3 Missense_Mutation p.R644C 0.42 deleterious(0) probably_damaging(0.987) TCGA-XY-A8S2-01 10 115349537 115349537 A G NRAP Missense_Mutation p.L1659S 0.37 deleterious(0.01) probably_damaging(1) TCGA-XY-A8S2-01 10 123844801 123844801 A T TACC2 Missense_Mutation p.E929V 0.30 benign(0.015) TCGA-XY-A8S2-01 10 14976452 14976454 ACA - DCLRE1C In_Frame_Del p.V202del 0.27 TCGA-XY-A8S2-01 11 57472453 57472453 T G MED19 Missense_Mutation p.T156P 0.38 tolerated(0.95) benign(0.001) TCGA-XY-A8S2-01 11 72438118 72438118 T A ARAP1 Missense_Mutation p.H19L 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-XY-A8S2-01 11 77612564 77612564 A G INTS4 Missense_Mutation p.Y711H 0.31 deleterious(0) possibly_damaging(0.907) TCGA-XY-A8S2-01 11 8734259 8734259 T G ST5 Missense_Mutation p.I671L 0.24 tolerated(0.59) benign(0.015) TCGA-XY-A8S2-01 12 123041970 123041970 C G KNTC1 Missense_Mutation p.L438V 0.23 tolerated(0.16) probably_damaging(0.967) TCGA-XY-A8S2-01 12 54448769 54448769 C A HOXC4 Nonsense_Mutation p.S192* 0.25 TCGA-XY-A8S2-01 12 56501389 56501389 G A PA2G4 Missense_Mutation p.G160R 0.06 deleterious(0.02) possibly_damaging(0.854) TCGA-XY-A8S2-01 12 7848063 7848063 C A GDF3 Missense_Mutation p.D88Y 0.15 deleterious(0) probably_damaging(0.997) TCGA-XY-A8S2-01 12 93803067 93803067 T C UBE2N 3'UTR 0.29 TCGA-XY-A8S2-01 13 113897455 113897455 C G CUL4A Missense_Mutation p.N403K 0.28 deleterious(0) probably_damaging(0.944) TCGA-XY-A8S2-01 14 105415680 105415680 G T AHNAK2 Silent p.L2036L 0.53 TCGA-XY-A8S2-01 14 45665475 45665475 A T FANCM Missense_Mutation p.E1814V 0.20 deleterious(0.01) possibly_damaging(0.629) TCGA-XY-A8S2-01 14 94933616 94933616 C T SERPINA9 Silent p.E262E 0.20 TCGA-XY-A8S2-01 15 33895565 33895565 G C RYR3 Missense_Mutation p.G722R 0.16 probably_damaging(1) TCGA-XY-A8S2-01 15 42446574 42446574 G A PLA2G4F Silent p.C89C 0.15 TCGA-XY-A8S2-01 15 49170473 49170473 G C EID1 Missense_Mutation p.G34R 0.24 deleterious(0) probably_damaging(1) TCGA-XY-A8S2-01 15 63363381 63363381 T C TPM1 3'UTR 0.17 TCGA-XY-A8S2-01 16 22268122 22268122 C T EEF2K Silent p.P224P 0.37 TCGA-XY-A8S2-01 16 72992565 72992565 G C ZFHX3 Missense_Mutation p.L494V 0.39 possibly_damaging(0.899) TCGA-XY-A8S2-01 17 12921085 12921085 C T ELAC2 Silent p.L60L 0.19 TCGA-XY-A8S2-01 17 40817522 40817522 G A TUBG2 Missense_Mutation p.R212Q 0.06 deleterious(0.05) benign(0.083) TCGA-XY-A8S2-01 17 43173564 43173564 A T NMT1 Silent p.L169L 0.15 TCGA-XY-A8S2-01 17 56293605 56293605 C G MKS1 Splice_Site p.X88_splice 0.26 TCGA-XY-A8S2-01 17 60814457 60814457 G T MARCH10 Missense_Mutation p.P258T 0.27 tolerated(0.65) benign(0.015) TCGA-XY-A8S2-01 19 15284960 15284960 T C NOTCH3 Missense_Mutation p.Q1552R 0.36 tolerated(0.11) benign(0.076) TCGA-XY-A8S2-01 19 41932344 41932344 C T B3GNT8 Missense_Mutation p.D114N 0.47 tolerated(0.49) benign(0.116) TCGA-XY-A8S2-01 19 47422321 47422321 A T ARHGAP35 Missense_Mutation p.K130I 0.33 deleterious(0) probably_damaging(0.999) TCGA-XY-A8S2-01 19 50826601 50826601 C A KCNC3 Missense_Mutation p.V537F 0.31 deleterious(0) probably_damaging(1) TCGA-XY-A8S2-01 19 5696679 5696690 ACCTCGTCGATG - LONP1 Splice_Site p.X588_splice 0.34 TCGA-XY-A8S2-01 1 116940526 116940526 G A ATP1A1 Missense_Mutation p.V664I 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-XY-A8S2-01 1 152734271 152734271 A T KPRP 3'UTR 0.28 TCGA-XY-A8S2-01 1 173839876 173839876 G A ZBTB37 Silent p.K171K 0.38 TCGA-XY-A8S2-01 1 47905265 47905272 AGTCGCCG GGTGCCAGCAAAGA FOXD2 In_Frame_Ins p.A488_G489delinsPAKS 0.10 TCGA-XY-A8S2-01 1 8424850 8424850 T C RERE Missense_Mutation p.E499G 0.14 probably_damaging(0.977) TCGA-XY-A8S2-01 20 3903951 3903951 G - PANK2 3'UTR 0.33 TCGA-XY-A8S2-01 20 45905062 45905062 G C ZMYND8 Missense_Mutation p.S492R 0.26 deleterious_low_confidence(0.05) benign(0.007) TCGA-XY-A8S2-01 20 52789455 52789455 G T CYP24A1 Missense_Mutation p.L148M 0.08 deleterious(0.05) possibly_damaging(0.589) TCGA-XY-A8S2-01 22 22842853 22842853 C G ZNF280B Missense_Mutation p.G291R 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-XY-A8S2-01 22 42906660 42906660 C G RRP7A 3'UTR 0.15 TCGA-XY-A8S2-01 2 111556598 111556598 C G ACOXL Missense_Mutation p.H156Q 0.20 deleterious(0) possibly_damaging(0.83) TCGA-XY-A8S2-01 2 152486121 152486121 C G NEB Missense_Mutation p.G3255R 0.20 probably_damaging(1) TCGA-XY-A8S2-01 2 162751205 162751205 C T SLC4A10 Missense_Mutation p.A404V 0.26 deleterious(0) probably_damaging(0.998) TCGA-XY-A8S2-01 2 172965287 172965287 G T DLX2 Missense_Mutation p.A324E 0.05 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-XY-A8S2-01 2 231174675 231174675 G T SP140 Nonsense_Mutation p.G699* 0.24 TCGA-XY-A8S2-01 3 137483621 137483621 G A SOX14 5'UTR 0.07 TCGA-XY-A8S2-01 3 15274030 15274030 T C CAPN7 Missense_Mutation p.I346T 0.26 tolerated(0.05) benign(0.285) TCGA-XY-A8S2-01 3 52492745 52492745 G C NISCH Missense_Mutation p.R82T 0.24 deleterious(0.04) benign(0.151) TCGA-XY-A8S2-01 4 48597656 48597656 C T FRYL Missense_Mutation p.R400H 0.36 deleterious(0) probably_damaging(0.992) TCGA-XY-A8S2-01 4 6296878 6296878 G T WFS1 Missense_Mutation p.A275S 0.10 tolerated(0.24) benign(0.065) TCGA-XY-A8S2-01 5 115837930 115837930 T A SEMA6A Missense_Mutation p.N65I 0.15 deleterious(0) possibly_damaging(0.87) TCGA-XY-A8S2-01 5 132232477 132232479 CTT - AFF4 In_Frame_Del p.K615del 0.37 TCGA-XY-A8S2-01 5 137762705 137762705 C T KDM3B Missense_Mutation p.L1485F 0.28 deleterious(0) probably_damaging(0.999) TCGA-XY-A8S2-01 5 176936846 176936848 CGA - DOK3 In_Frame_Del p.R3del 0.33 TCGA-XY-A8S2-01 5 37044488 37044488 A T NIPBL Missense_Mutation p.I2050F 0.40 deleterious(0) probably_damaging(0.981) TCGA-XY-A8S2-01 6 26199104 26199105 CT - HIST1H2AD Frame_Shift_Del p.H124Pfs*? 0.21 TCGA-XY-A8S2-01 6 2770515 2770515 G A WRNIP1 Silent p.A392A 0.06 TCGA-XY-A8S2-01 6 27777859 27777859 G A HIST1H3H Missense_Mutation p.R3H 0.05 tolerated_low_confidence(0.06) benign(0) TCGA-XY-A8S2-01 6 27834706 27834706 G A HIST1H1B Missense_Mutation p.A201V 0.21 deleterious(0.01) unknown(0) TCGA-XY-A8S2-01 6 30652190 30652190 T A PPP1R18 Nonsense_Mutation p.K536* 0.19 TCGA-XY-A8S2-01 6 84862439 84862439 C T KIAA1009 Missense_Mutation p.G1152R 0.05 tolerated(0.1) possibly_damaging(0.905) TCGA-XY-A8S2-01 7 149545019 149545019 A C ZNF862 Missense_Mutation p.Q146P 0.14 deleterious_low_confidence(0) possibly_damaging(0.762) TCGA-XY-A8S2-01 7 150912779 150912779 C G ABCF2 Missense_Mutation p.E481Q 0.14 tolerated(0.14) possibly_damaging(0.827) TCGA-XY-A8S2-01 7 155250990 155250990 T G EN2 5'UTR 0.26 TCGA-XY-A8S2-01 7 72419252 72419252 C T POM121 3'UTR 0.19 TCGA-XY-A8S2-01 8 100523425 100523425 T G VPS13B Missense_Mutation p.L1465V 0.06 deleterious(0.01) possibly_damaging(0.9) TCGA-XY-A8S2-01 8 25344851 25344851 G A CDCA2 Splice_Site p.X511_splice 0.12 TCGA-XY-A8S2-01 9 19346326 19346326 C T DENND4C Missense_Mutation p.L1138F 0.32 tolerated(0.7) benign(0.003) TCGA-XY-A8S2-01 9 26995409 26995409 A T LRRC19 3'UTR 0.23 TCGA-XY-A8S2-01 9 36657333 36657333 A C MELK Silent p.T383T 0.30 TCGA-XY-A8S2-01 9 5339831 5339831 G C RLN1 5'UTR 0.26 TCGA-XY-A8S2-01 X 128925040 128925040 G A SASH3 Missense_Mutation p.S142N 0.42 tolerated(0.11) benign(0.018) TCGA-XY-A8S2-01 X 31950249 31950249 G C DMD Missense_Mutation p.P2237R 0.16 possibly_damaging(0.904) TCGA-XY-A8S2-01 X 57936054 57936054 G A ZXDA Silent p.Y267Y 0.35 TCGA-XY-A8S3-01 11 64375421 64375421 C T NRXN2 Silent p.T1462T 0.92 TCGA-XY-A8S3-01 12 88524340 88524340 G C CEP290 Missense_Mutation p.N166K 0.21 benign(0.009) TCGA-XY-A8S3-01 14 106320477 106320477 T C IGHM Missense_Mutation p.M445V 0.12 deleterious(0.02) benign(0.008) TCGA-XY-A8S3-01 16 2825543 2825543 C T TCEB2 Silent p.L51L 0.11 TCGA-XY-A8S3-01 1 109242141 109242142 AG - PRPF38B Frame_Shift_Del p.E383Afs*12 0.29 TCGA-XY-A8S3-01 1 169356550 169356550 A T BLZF1 3'UTR 0.13 TCGA-XY-A8S3-01 1 27686379 27686379 G T MAP3K6 Missense_Mutation p.H763Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-XY-A8S3-01 2 5836091 5836091 G C SOX11 3'UTR 0.10 TCGA-XY-A8S3-01 3 27326130 27326130 G C NEK10 Missense_Mutation p.N659K 0.25 deleterious(0) probably_damaging(0.92) TCGA-XY-A8S3-01 6 139175243 139175245 GAA - ECT2L In_Frame_Del p.E386del 0.29 TCGA-XY-A8S3-01 6 41196569 41196569 A T TREML4 Missense_Mutation p.S61C 0.33 tolerated(0.19) possibly_damaging(0.852) TCGA-XY-A8S3-01 8 17885385 17885385 C T PCM1 3'UTR 0.09 TCGA-XY-A8S3-01 9 131397934 131397934 G A WDR34 Intron 0.89 TCGA-XY-A8S3-01 9 16727865 16727865 G A BNC2 Missense_Mutation p.T87M 0.07 deleterious_low_confidence(0.01) benign(0.064) TCGA-XY-A9T9-01 11 130748342 130748342 G C SNX19 Missense_Mutation p.S985C 0.22 tolerated_low_confidence(0.19) benign(0.325) TCGA-XY-A9T9-01 12 25378561 25378561 G A KRAS Missense_Mutation p.A146V 0.17 deleterious(0.02) probably_damaging(0.909) TCGA-XY-A9T9-01 15 41804958 41804958 G A LTK Silent p.A102A 0.21 TCGA-XY-A9T9-01 15 45457122 45457122 C T DUOX1 3'UTR 0.09 TCGA-XY-A9T9-01 16 31088507 31088507 C T ZNF646 Missense_Mutation p.H288Y 0.17 deleterious(0) probably_damaging(0.997) TCGA-XY-A9T9-01 19 11943326 11943329 ACAA - ZNF440 Frame_Shift_Del p.Q446Hfs*3 0.12 TCGA-XY-A9T9-01 1 152692487 152692487 G T C1orf68 Missense_Mutation p.A164S 0.13 tolerated_low_confidence(0.17) probably_damaging(0.997) TCGA-XY-A9T9-01 3 132172516 132172516 C T DNAJC13 Missense_Mutation p.A273V 0.08 tolerated(1) benign(0) TCGA-XY-A9T9-01 3 183013184 183013184 C T MCF2L2 Missense_Mutation p.A527T 0.34 tolerated(0.08) possibly_damaging(0.829) TCGA-XY-A9T9-01 3 48488478 48488478 G T ATRIP Missense_Mutation p.A77S 0.14 tolerated(0.4) benign(0.027) TCGA-XY-A9T9-01 4 46053563 46053563 C G GABRG1 Missense_Mutation p.V337L 0.10 tolerated(0.08) probably_damaging(0.992) TCGA-XY-A9T9-01 8 48746932 48746932 C G PRKDC Silent p.L2658L 0.08 TCGA-XY-A9T9-01 9 130941502 130941502 C T CIZ1 Silent p.P328P 0.11 TCGA-YU-A90P-01 13 103249346 103249369 CAGCCTGGCAGTTTGCCGCTTCCT - TPP2 5'UTR 0.23 TCGA-YU-A90P-01 18 14748512 14748512 G C ANKRD30B Missense_Mutation p.G32R 0.21 tolerated_low_confidence(0.27) benign(0.013) TCGA-YU-A90P-01 19 46394069 46394069 C T MYPOP Missense_Mutation p.V338M 0.15 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-YU-A90P-01 19 8539106 8539106 G C HNRNPM Silent p.G366G 0.13 TCGA-YU-A90P-01 1 214170542 214170542 C T PROX1 Nonsense_Mutation p.Q222* 0.07 TCGA-YU-A90P-01 1 215847769 215847769 C T USH2A Missense_Mutation p.R4495H 0.19 benign(0.001) TCGA-YU-A90P-01 2 108496563 108496563 G C RGPD4 Missense_Mutation p.K1688N 0.05 deleterious_low_confidence(0.02) benign(0.092) TCGA-YU-A90P-01 3 139257745 139257745 C G RBP1 Missense_Mutation p.V106L 0.07 tolerated(0.33) benign(0.001) TCGA-YU-A90P-01 3 154898358 154898358 G T MME 3'UTR 0.06 TCGA-YU-A90P-01 4 30725116 30725116 C T PCDH7 Missense_Mutation p.T691M 0.24 deleterious(0) probably_damaging(0.995) TCGA-YU-A90P-01 5 64906830 64906830 G C TRIM23 Nonsense_Mutation p.S229* 0.22 TCGA-YU-A90P-01 6 31725947 31725947 G C MSH5 Silent p.V340V 0.33 TCGA-YU-A90P-01 8 104395002 104395002 T C CTHRC1 3'UTR 0.25 TCGA-YU-A90P-01 8 12886088 12886088 T C KIAA1456 3'UTR 0.28 TCGA-YU-A90P-01 X 147891442 147891442 C T AFF2 Missense_Mutation p.R362W 0.36 deleterious(0) probably_damaging(0.998) TCGA-YU-A90Q-01 12 53702803 53702804 CT - AAAS Frame_Shift_Del p.V313Lfs*9 0.11 TCGA-YU-A90Q-01 17 40950543 40950543 G T COA3 Silent p.R53R 0.06 TCGA-YU-A90Q-01 1 115258748 115258748 C T NRAS Missense_Mutation p.G12S 0.15 deleterious(0.03) benign(0.129) TCGA-YU-A90Q-01 21 44485607 44485607 C T CBS Missense_Mutation p.A186T 0.23 deleterious(0.01) possibly_damaging(0.899) TCGA-YU-A90Q-01 3 111851992 111851992 C G GCSAM 5'UTR 0.30 TCGA-YU-A90Q-01 4 55599320 55599320 G C KIT Missense_Mutation p.D816H 0.34 deleterious(0.01) benign(0.292) TCGA-YU-A90Q-01 4 77290777 77290777 C T CCDC158 Splice_Site p.X384_splice 0.21 TCGA-YU-A90Q-01 7 131849922 131849922 A G PLXNA4 Missense_Mutation p.F1442L 0.05 deleterious(0.01) probably_damaging(0.996) TCGA-YU-A90Q-01 7 72418901 72418901 G A POM121 Silent p.P964P 0.11 TCGA-YU-A90S-01 5 19473162 19473162 C T CDH18 3'UTR 0.36 TCGA-YU-A90W-01 10 15210588 15210588 C T NMT2 Silent p.A8A 0.07 TCGA-YU-A90W-01 10 86131820 86131820 G A CCSER2 Missense_Mutation p.G338R 0.15 deleterious(0.01) possibly_damaging(0.783) TCGA-YU-A90W-01 11 30937241 30937241 C A DCDC1 Missense_Mutation p.S1157I 0.27 deleterious(0.03) possibly_damaging(0.607) TCGA-YU-A90W-01 11 557032 557032 C T C11orf35 Missense_Mutation p.R260Q 0.15 tolerated(0.49) benign(0.208) TCGA-YU-A90W-01 12 2908333 2908333 G C FKBP4 Silent p.L198L 0.17 TCGA-YU-A90W-01 13 27664080 27664081 AG - USP12 Frame_Shift_Del p.L225Vfs*3 0.15 TCGA-YU-A90W-01 14 95884032 95884032 A G SYNE3 3'UTR 0.08 TCGA-YU-A90W-01 15 41625107 41625107 C A NUSAP1 5'UTR 0.31 TCGA-YU-A90W-01 16 28914470 28914470 T A ATP2A1 Splice_Site p.X954_splice 0.25 TCGA-YU-A90W-01 16 90124710 90124710 C G PRDM7 Missense_Mutation p.G489A 0.33 tolerated_low_confidence(0.06) benign(0.02) TCGA-YU-A90W-01 17 28960373 28960381 GAACAGAAT - LRRC37BP1 RNA 0.12 TCGA-YU-A90W-01 17 37627847 37627850 ACTC - CDK12 Frame_Shift_Del p.H589Qfs*20 0.34 TCGA-YU-A90W-01 17 39680453 39680453 G A KRT19 Missense_Mutation p.T297I 0.26 tolerated(0.2) probably_damaging(0.979) TCGA-YU-A90W-01 17 5212059 5212059 T C RABEP1 Silent p.L35L 0.14 TCGA-YU-A90W-01 19 10940946 10940946 G T DNM2 Missense_Mutation p.R812L 0.10 deleterious_low_confidence(0.03) probably_damaging(0.953) TCGA-YU-A90W-01 19 21132152 21132152 A T ZNF85 Missense_Mutation p.I278L 0.14 tolerated(0.45) benign(0.029) TCGA-YU-A90W-01 19 51526395 51526395 T C KLK11 Missense_Mutation p.T217A 0.10 tolerated(0.14) possibly_damaging(0.6) TCGA-YU-A90W-01 1 186283154 186283154 C T TPR Silent p.V2347V 0.14 TCGA-YU-A90W-01 1 211432785 211432785 G T RCOR3 5'UTR 0.06 TCGA-YU-A90W-01 1 29314195 29314195 A G EPB41 Silent p.L82L 0.11 TCGA-YU-A90W-01 20 51589687 51589687 G A TSHZ2 5'UTR 0.35 TCGA-YU-A90W-01 21 34443427 34443427 G T OLIG1 3'UTR 0.07 TCGA-YU-A90W-01 2 133174783 133174783 G A GPR39 Silent p.Q56Q 0.12 TCGA-YU-A90W-01 2 223918619 223918619 T C KCNE4 3'UTR 0.23 TCGA-YU-A90W-01 3 122420415 122420415 A G PARP14 Missense_Mutation p.K1005R 0.18 tolerated(0.62) benign(0) TCGA-YU-A90W-01 3 51433126 51433126 G A RBM15B 3'UTR 0.34 TCGA-YU-A90W-01 5 134364535 134364535 C G PITX1 Silent p.S293S 0.29 TCGA-YU-A90W-01 6 56368856 56368856 G A DST Missense_Mutation p.A3879V 0.10 benign(0.09) TCGA-YU-A90W-01 7 111980956 111980956 G A ZNF277 Missense_Mutation p.V347I 0.22 tolerated(0.29) possibly_damaging(0.669) TCGA-YU-A90W-01 7 51096836 51096836 C A COBL Missense_Mutation p.G653C 0.33 deleterious(0.01) possibly_damaging(0.885) TCGA-YU-A90W-01 8 642586 642586 G A ERICH1 Nonsense_Mutation p.R66* 0.21 TCGA-YU-A90W-01 9 116901 116901 G C FOXD4 Missense_Mutation p.L407V 0.08 deleterious(0.05) probably_damaging(0.981) TCGA-YU-A90W-01 X 109924730 109924730 T C CHRDL1 Missense_Mutation p.H379R 0.47 deleterious(0.04) probably_damaging(0.996) TCGA-YU-A90Y-01 11 107992300 107992300 C A ACAT1 5'UTR 0.26 TCGA-YU-A90Y-01 11 108139142 108139142 A G ATM Missense_Mutation p.I882V 0.29 tolerated(1) benign(0.001) TCGA-YU-A90Y-01 12 118682740 118682740 C T TAOK3 Missense_Mutation p.A51T 0.05 deleterious(0) probably_damaging(0.996) TCGA-YU-A90Y-01 14 103568544 103568544 G T EXOC3L4 Nonsense_Mutation p.E162* 0.33 TCGA-YU-A90Y-01 17 42759494 42759494 G C CCDC43 Missense_Mutation p.A102G 0.04 deleterious(0.01) possibly_damaging(0.466) TCGA-YU-A90Y-01 1 104068861 104068861 G A RNPC3 Missense_Mutation p.V57I 0.14 tolerated(0.12) benign(0.014) TCGA-YU-A90Y-01 1 120165996 120165996 C G ZNF697 Missense_Mutation p.E324Q 0.19 deleterious(0.03) possibly_damaging(0.527) TCGA-YU-A90Y-01 21 27840885 27840885 G T CYYR1 Missense_Mutation p.P134T 0.06 deleterious(0) benign(0.378) TCGA-YU-A90Y-01 22 24124604 24124604 C A MMP11 Missense_Mutation p.P423T 0.16 deleterious(0) probably_damaging(0.989) TCGA-YU-A90Y-01 2 135694499 135694499 G C CCNT2 Missense_Mutation p.C110S 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-YU-A90Y-01 2 136575423 136575423 C T LCT Missense_Mutation p.G399R 0.04 deleterious(0) probably_damaging(1) TCGA-YU-A90Y-01 2 75720472 75720472 C A EVA1A Nonsense_Mutation p.E117* 0.22 TCGA-YU-A90Y-01 6 111714087 111714087 T C REV3L Silent p.E218E 0.26 TCGA-YU-A90Y-01 6 139569008 139569008 G A TXLNB Silent p.S372S 0.20 TCGA-YU-A90Y-01 6 144780096 144780096 C T UTRN Silent p.S825S 0.29 TCGA-YU-A90Y-01 6 152631005 152631005 G A SYNE1 Nonsense_Mutation p.Q5723* 0.07 TCGA-YU-A90Y-01 7 50671755 50671755 T A GRB10 Missense_Mutation p.H495L 0.12 deleterious(0) probably_damaging(0.999) TCGA-YU-A90Y-01 9 15472670 15472672 CTG - PSIP1 In_Frame_Del p.A312del 0.22 TCGA-YU-A912-01 16 4903071 4903071 C G UBN1 Silent p.L51L 0.14 TCGA-YU-A912-01 16 4927071 4927071 C G UBN1 Missense_Mutation p.T1075R 0.31 deleterious(0) probably_damaging(0.997) TCGA-YU-A912-01 19 1061799 1061799 G A ABCA7 Missense_Mutation p.V1828M 0.24 deleterious(0.02) benign(0.327) TCGA-YU-A912-01 1 11982843 11982843 A C KIAA2013 Missense_Mutation p.H579Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-YU-A912-01 1 156713227 156713227 T G HDGF 3'UTR 0.21 TCGA-YU-A912-01 1 16174549 16174549 G T SPEN 5'UTR 0.12 TCGA-YU-A912-01 20 61039785 61039785 T A GATA5 3'UTR 0.31 TCGA-YU-A912-01 22 29627121 29627121 G T EMID1 Missense_Mutation p.G193V 0.17 deleterious(0.01) benign(0.361) TCGA-YU-A912-01 2 131675018 131675018 G A ARHGEF4 5'UTR 0.23 TCGA-YU-A912-01 2 230663622 230663622 C T TRIP12 Missense_Mutation p.A1076T 0.28 tolerated(0.14) benign(0.079) TCGA-YU-A912-01 4 55599340 55599340 T A KIT Missense_Mutation p.N822K 0.48 deleterious(0) probably_damaging(1) TCGA-YU-A912-01 5 180326222 180326222 T A BTNL8 5'UTR 0.30 TCGA-YU-A912-01 6 41738715 41738715 G A FRS3 Missense_Mutation p.T374I 0.09 tolerated(0.41) benign(0.004) TCGA-YU-A912-01 7 123388725 123388725 G A WASL Missense_Mutation p.L22F 0.28 deleterious(0) unknown(0) TCGA-YU-A912-01 7 150725641 150725641 C T ABCB8 Silent p.G13G 0.32 TCGA-YU-A912-01 7 80141182 80141182 T C GNAT3 Missense_Mutation p.K21E 0.16 tolerated(0.08) benign(0.197) TCGA-YU-A912-01 7 82389980 82389980 A G PCLO Missense_Mutation p.L5088P 0.17 unknown(0) TCGA-YU-A912-01 8 109094847 109094847 G C RSPO2 Missense_Mutation p.S7C 0.15 deleterious(0.05) benign(0.417) TCGA-YU-A912-01 8 77768507 77768507 C T ZFHX4 Missense_Mutation p.S3117F 0.19 probably_damaging(0.935) TCGA-YU-A94D-01 10 94837076 94837076 C G CYP26A1 3'UTR 0.54 TCGA-YU-A94D-01 11 118765587 118765587 C T BCL9L 3'UTR 0.32 TCGA-YU-A94D-01 12 104698695 104698695 T A EID3 Missense_Mutation p.I328N 0.51 deleterious(0) probably_damaging(1) TCGA-YU-A94D-01 13 73335570 73335571 AT - DIS3 Frame_Shift_Del p.Y867Wfs*9 0.24 TCGA-YU-A94D-01 14 55509766 55509766 G T SOCS4 Nonsense_Mutation p.E3* 0.45 TCGA-YU-A94D-01 14 81297580 81297612 CAGCTGCACTCTCAAATCTGACATTTGCTTCTC - CEP128 In_Frame_Del p.E362_L372del 0.32 TCGA-YU-A94D-01 16 2094711 2094711 G A NTHL1 Missense_Mutation p.R157W 0.42 deleterious(0.03) benign(0.022) TCGA-YU-A94D-01 17 78262016 78262016 G A RNF213 Missense_Mutation p.G222S 0.04 benign(0.203) TCGA-YU-A94D-01 19 20117945 20117946 CT - ZNF682 Frame_Shift_Del p.E122Vfs*2 0.31 TCGA-YU-A94D-01 19 58341813 58341813 C T ZNF587B 5'UTR 0.33 TCGA-YU-A94D-01 1 159827898 159827898 C A VSIG8 Missense_Mutation p.V138F 0.51 deleterious(0.01) probably_damaging(0.993) TCGA-YU-A94D-01 1 200529865 200529865 T C KIF14 Silent p.K1405K 0.35 TCGA-YU-A94D-01 2 103380825 103380825 C A TMEM182 Nonsense_Mutation p.Y90* 0.26 TCGA-YU-A94D-01 2 5834266 5834266 A G SOX11 3'UTR 0.12 TCGA-YU-A94D-01 3 10012302 10012302 G A EMC3 Missense_Mutation p.R180W 0.45 deleterious(0) probably_damaging(0.996) TCGA-YU-A94D-01 4 48115254 48115254 C T TXK Silent p.P48P 0.40 TCGA-YU-A94D-01 6 50740418 50740418 A C TFAP2D Silent p.T400T 0.35 TCGA-YU-A94D-01 7 137076063 137076063 C A DGKI Missense_Mutation p.R1034I 0.06 tolerated(0.17) benign(0.034) TCGA-YU-A94D-01 7 44161749 44161749 C G POLD2 5'UTR 0.36 TCGA-YU-A94D-01 8 145619906 145619906 C T CPSF1 Missense_Mutation p.A1174T 0.29 deleterious(0.05) probably_damaging(0.954) TCGA-YU-A94D-01 9 117266554 117266554 T C DFNB31 Silent p.L176L 0.34 TCGA-YU-A94D-01 9 20819865 20819865 T C FOCAD Missense_Mutation p.I509T 0.38 tolerated(0.23) benign(0.138) TCGA-YU-A94D-01 9 77339346 77339346 T C TRPM6 3'UTR 0.27 TCGA-YU-A94D-01 X 107929306 107929306 G A COL4A5 Missense_Mutation p.G1421D 0.05 probably_damaging(1) TCGA-YU-A94D-01 X 18845518 18845518 C A PPEF1 Missense_Mutation p.S625R 0.31 tolerated(0.36) possibly_damaging(0.835) TCGA-YU-A94D-01 X 21995231 21995231 G C SMS Missense_Mutation p.D128H 0.05 deleterious(0) probably_damaging(0.998) TCGA-YU-A94D-01 X 27839493 27839493 G A MAGEB10 Missense_Mutation p.D24N 0.32 tolerated(0.33) benign(0.065) TCGA-YU-A94D-01 X 27998407 27998407 G T DCAF8L1 Missense_Mutation p.Q349K 0.06 deleterious(0) benign(0.206) TCGA-YU-A94D-01 X 40569339 40569339 G T MED14 Missense_Mutation p.H355Q 0.41 deleterious(0.01) benign(0.445) TCGA-YU-A94D-01 X 65479954 65479954 T A HEPH Missense_Mutation p.Y1071N 0.40 deleterious(0) probably_damaging(0.959) TCGA-YU-A94I-01 10 859126 859126 T A LARP4B Missense_Mutation p.I653F 0.44 deleterious(0) probably_damaging(0.998) TCGA-YU-A94I-01 11 18057536 18057536 G T TPH1 Missense_Mutation p.L91I 0.30 tolerated(0.4) benign(0.001) TCGA-YU-A94I-01 11 18057614 18057614 C G TPH1 Missense_Mutation p.D65H 0.27 deleterious(0.04) probably_damaging(0.933) TCGA-YU-A94I-01 11 57281542 57281542 T A SLC43A1 Missense_Mutation p.M15L 0.39 tolerated(0.2) possibly_damaging(0.53) TCGA-YU-A94I-01 11 66260275 66260275 G A DPP3 Nonsense_Mutation p.W359* 0.75 TCGA-YU-A94I-01 12 102125386 102125386 C T SYCP3 Missense_Mutation p.R171K 0.29 tolerated(0.23) possibly_damaging(0.768) TCGA-YU-A94I-01 12 51281477 51281477 G C TMPRSS12 3'UTR 0.79 TCGA-YU-A94I-01 12 53410339 53410339 C G EIF4B Silent p.T32T 0.23 TCGA-YU-A94I-01 12 56505268 56505268 C T PA2G4 Silent p.L358L 0.30 TCGA-YU-A94I-01 14 31576895 31576897 CTC - HECTD1 In_Frame_Del p.G2165del 0.30 TCGA-YU-A94I-01 14 69865903 69865914 GGGTCTGTTGCC - SLC39A9 5'UTR 0.26 TCGA-YU-A94I-01 14 91642295 91642295 G A C14orf159 Missense_Mutation p.E209K 0.14 deleterious(0.01) benign(0.149) TCGA-YU-A94I-01 14 96858506 96858506 G A AK7 Silent p.E5E 0.08 TCGA-YU-A94I-01 15 42156128 42156128 C T SPTBN5 Missense_Mutation p.R2338Q 0.16 probably_damaging(1) TCGA-YU-A94I-01 16 1254228 1254228 G A CACNA1H Missense_Mutation p.D741N 0.30 tolerated(0.05) probably_damaging(0.995) TCGA-YU-A94I-01 16 22376333 22376333 G A CDR2 Missense_Mutation p.L28F 0.42 deleterious(0) probably_damaging(0.999) TCGA-YU-A94I-01 16 3900553 3900554 AA - CREBBP Frame_Shift_Del p.F181* 0.21 TCGA-YU-A94I-01 16 81194388 81194388 C T PKD1L2 RNA 0.11 TCGA-YU-A94I-01 17 15532122 15532122 A T TRIM16 Missense_Mutation p.F501Y 0.30 tolerated(0.77) benign(0.233) TCGA-YU-A94I-01 17 58740737 58740737 A T PPM1D Nonsense_Mutation p.K548* 0.31 TCGA-YU-A94I-01 17 61898885 61898886 TG - FTSJ3 Frame_Shift_Del p.Q572Dfs*9 0.19 TCGA-YU-A94I-01 17 74288014 74288014 C T QRICH2 Missense_Mutation p.V766I 0.10 tolerated(0.1) benign(0.234) TCGA-YU-A94I-01 19 34292141 34292141 C A KCTD15 Missense_Mutation p.P46T 0.27 deleterious(0) probably_damaging(0.999) TCGA-YU-A94I-01 19 35084435 35084435 T A SCGB2B2 3'UTR 0.27 TCGA-YU-A94I-01 19 36435792 36435792 C T LRFN3 Silent p.T586T 0.40 TCGA-YU-A94I-01 19 50312451 50312451 G T FUZ Missense_Mutation p.P252Q 0.26 deleterious(0) probably_damaging(0.997) TCGA-YU-A94I-01 19 686926 686926 G A PRSS57 Missense_Mutation p.S215L 0.37 deleterious(0) possibly_damaging(0.876) TCGA-YU-A94I-01 1 153784507 153784507 C T GATAD2B Silent p.T507T 0.10 TCGA-YU-A94I-01 1 158605702 158605702 C T SPTA1 Splice_Site p.X1811_splice 0.08 TCGA-YU-A94I-01 1 23520342 23520342 G A HTR1D Missense_Mutation p.A124V 0.45 tolerated(0.08) probably_damaging(0.999) TCGA-YU-A94I-01 1 235582743 235582743 A T TBCE Intron 0.15 TCGA-YU-A94I-01 1 27057901 27057901 C T ARID1A Nonsense_Mutation p.Q537* 0.52 TCGA-YU-A94I-01 20 20033204 20033204 G A CRNKL1 Missense_Mutation p.T89M 0.37 deleterious_low_confidence(0) benign(0.009) TCGA-YU-A94I-01 20 50769116 50769116 G A ZFP64 Missense_Mutation p.R539W 0.33 deleterious(0.02) probably_damaging(0.936) TCGA-YU-A94I-01 21 34050984 34050984 C T SYNJ1 Missense_Mutation p.R533Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-YU-A94I-01 22 42126573 42126573 C T MEI1 Missense_Mutation p.S343F 0.92 deleterious(0.01) benign(0.01) TCGA-YU-A94I-01 2 136528187 136528187 T A UBXN4 Missense_Mutation p.M235K 0.25 deleterious(0) benign(0.104) TCGA-YU-A94I-01 2 148657362 148657362 C G ACVR2A Silent p.L141L 0.29 TCGA-YU-A94I-01 2 190535267 190535267 C T ASNSD1 Missense_Mutation p.L583F 0.21 deleterious(0.01) probably_damaging(0.911) TCGA-YU-A94I-01 2 242434953 242434953 C T STK25 3'UTR 0.18 TCGA-YU-A94I-01 2 27800712 27800712 A T C2orf16 Missense_Mutation p.S425C 0.27 tolerated(0.06) probably_damaging(0.977) TCGA-YU-A94I-01 2 86333335 86333335 C T PTCD3 5'UTR 0.24 TCGA-YU-A94I-01 3 100467498 100467498 C A TFG 3'UTR 0.30 TCGA-YU-A94I-01 3 10132048 10132048 C T FANCD2 Silent p.G1252G 0.51 TCGA-YU-A94I-01 3 122296590 122296590 G C PARP15 Missense_Mutation p.V26L 0.64 tolerated_low_confidence(0.08) benign(0.005) TCGA-YU-A94I-01 3 180320071 180320071 C G TTC14 Missense_Mutation p.Q8E 0.25 deleterious(0) possibly_damaging(0.874) TCGA-YU-A94I-01 3 189586470 189586470 C A TP63 Nonsense_Mutation p.S365* 0.37 TCGA-YU-A94I-01 4 47901125 47901125 G A NFXL1 Missense_Mutation p.P280L 0.42 deleterious(0) probably_damaging(0.996) TCGA-YU-A94I-01 4 47939764 47939764 A C CNGA1 Missense_Mutation p.D318E 0.39 deleterious(0) possibly_damaging(0.615) TCGA-YU-A94I-01 5 118809607 118809607 T C HSD17B4 Silent p.N64N 0.41 TCGA-YU-A94I-01 5 179442323 179442323 T C RNF130 Intron 0.43 TCGA-YU-A94I-01 6 1313345 1313345 G A FOXQ1 Missense_Mutation p.A136T 0.38 tolerated(0.07) probably_damaging(0.918) TCGA-YU-A94I-01 6 149699839 149699839 A G TAB2 Missense_Mutation p.N263S 0.17 tolerated(1) benign(0) TCGA-YU-A94I-01 6 150322744 150322744 C T RAET1K RNA 0.24 TCGA-YU-A94I-01 7 149430318 149430318 C T KRBA1 Missense_Mutation p.P758S 0.38 tolerated(0.28) probably_damaging(0.986) TCGA-YU-A94I-01 8 113308062 113308062 G T CSMD3 Missense_Mutation p.P2872T 0.36 deleterious(0.02) possibly_damaging(0.758) TCGA-YU-A94I-01 8 144663434 144663434 G C EEF1D Missense_Mutation p.A451G 0.27 deleterious(0.01) benign(0.206) TCGA-YU-A94I-01 8 146156383 146156383 C T ZNF16 Missense_Mutation p.G597E 0.49 deleterious(0) probably_damaging(0.975) TCGA-YU-A94I-01 9 116393 116393 G A FOXD4 3'UTR 0.14 TCGA-YU-A94I-01 X 24751914 24751914 A G POLA1 Missense_Mutation p.K599R 0.46 tolerated(0.43) benign(0.021) TCGA-YU-A94I-01 X 77393365 77393365 C T TAF9B Missense_Mutation p.A96T 0.44 deleterious(0.02) possibly_damaging(0.754) TCGA-YU-AA4L-01 11 1270147 1270147 G A MUC5B Missense_Mutation p.G4013R 0.30 unknown(0) TCGA-YU-AA4L-01 11 65744158 65744158 A C SART1 Missense_Mutation p.N593T 0.62 tolerated(0.58) benign(0.149) TCGA-YU-AA4L-01 12 8248713 8248713 G T NECAP1 3'UTR 0.19 TCGA-YU-AA4L-01 14 23504076 23504076 G A PSMB5 Silent p.S5S 0.08 TCGA-YU-AA4L-01 15 70960705 70960706 TG - UACA Frame_Shift_Del p.Q773Kfs*17 0.28 TCGA-YU-AA4L-01 16 69373724 69373724 G T NIP7 5'UTR 0.31 TCGA-YU-AA4L-01 19 11259855 11259855 G A SPC24 Missense_Mutation p.H74Y 0.07 tolerated(0.08) benign(0.124) TCGA-YU-AA4L-01 19 17039937 17039937 A G CPAMD8 Silent p.L1034L 0.45 TCGA-YU-AA4L-01 19 23836584 23836584 G T ZNF675 Missense_Mutation p.T384K 0.05 deleterious(0.04) possibly_damaging(0.528) TCGA-YU-AA4L-01 19 3575627 3575638 GGAGAAGATCCA - HMG20B In_Frame_Del p.I150_K153del 0.35 TCGA-YU-AA4L-01 1 152283719 152283719 T G FLG Missense_Mutation p.S1215R 0.08 benign(0.307) TCGA-YU-AA4L-01 1 197886677 197886677 G A LHX9 5'UTR 0.26 TCGA-YU-AA4L-01 1 89477486 89477486 C T GBP3 Missense_Mutation p.V365I 0.28 tolerated(0.7) benign(0.014) TCGA-YU-AA4L-01 20 52198198 52198198 G A ZNF217 Silent p.L390L 0.27 TCGA-YU-AA4L-01 20 60791521 60791522 - C HRH3 Frame_Shift_Ins p.G294Wfs*22 0.26 TCGA-YU-AA4L-01 2 219001679 219001679 G T CXCR2 3'UTR 0.18 TCGA-YU-AA4L-01 2 24392341 24392341 G T FAM228B 3'UTR 0.07 TCGA-YU-AA4L-01 3 174577138 174577138 C T NAALADL2 5'UTR 0.33 TCGA-YU-AA4L-01 4 126372841 126372841 A G FAT4 Missense_Mutation p.Y3557C 0.33 benign(0.168) TCGA-YU-AA4L-01 5 112418571 112418571 T G MCC Silent p.T590T 0.18 TCGA-YU-AA4L-01 5 138283066 138283066 G A SIL1 Nonsense_Mutation p.Q376* 0.10 TCGA-YU-AA4L-01 8 59060933 59060933 G A FAM110B 3'UTR 0.06 TCGA-YU-AA4L-01 9 100616400 100616400 C G FOXE1 Missense_Mutation p.H68Q 0.42 tolerated(0.18) benign(0.213) TCGA-YU-AA4L-01 X 151899528 151899528 C T MAGEA12 3'UTR 0.40 TCGA-YU-AA61-01 10 70760227 70760227 A C KIAA1279 Silent p.A158A 0.31 TCGA-YU-AA61-01 10 99205531 99205531 C T EXOSC1 Silent p.S35S 0.27 TCGA-YU-AA61-01 11 100933354 100933354 T A PGR Missense_Mutation p.Q679L 0.11 tolerated(0.05) possibly_damaging(0.791) TCGA-YU-AA61-01 11 46819368 46819368 G T CKAP5 Missense_Mutation p.A442D 0.06 deleterious(0.01) probably_damaging(0.984) TCGA-YU-AA61-01 15 50791330 50791330 A G USP8 3'UTR 0.20 TCGA-YU-AA61-01 15 76668615 76668615 C A SCAPER Missense_Mutation p.R1248L 0.10 deleterious(0) probably_damaging(0.999) TCGA-YU-AA61-01 17 57721790 57721790 A G CLTC Missense_Mutation p.I66V 0.25 tolerated(0.06) benign(0.006) TCGA-YU-AA61-01 19 50148669 50148669 G A SCAF1 Splice_Site p.X56_splice 0.19 TCGA-YU-AA61-01 1 10394661 10394661 G A KIF1B Missense_Mutation p.R957Q 0.22 deleterious(0.01) possibly_damaging(0.901) TCGA-YU-AA61-01 1 249211094 249211094 C G PGBD2 Missense_Mutation p.A104G 0.27 tolerated(0.35) benign(0.001) TCGA-YU-AA61-01 2 32667481 32667481 G T BIRC6 Missense_Mutation p.S1399I 0.10 probably_damaging(0.991) TCGA-YU-AA61-01 5 161277838 161277838 T C GABRA1 Missense_Mutation p.S8P 0.15 tolerated_low_confidence(0.22) benign(0.012) TCGA-YU-AA61-01 6 132860291 132860291 C A TAAR9 Missense_Mutation p.T288N 0.04 deleterious(0) probably_damaging(0.998) TCGA-YU-AA61-01 7 98991649 98991649 C T ARPC1B Intron 0.23 TCGA-YU-AA61-01 X 99945112 99945112 C A SYTL4 Missense_Mutation p.M256I 0.07 tolerated(0.47) benign(0) TCGA-ZM-AA05-01 10 85972858 85972858 G C CDHR1 Missense_Mutation p.E598D 0.10 tolerated(0.72) benign(0.008) TCGA-ZM-AA05-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.06 deleterious(0) possibly_damaging(0.479) TCGA-ZM-AA05-01 12 5022089 5022089 A T KCNA1 3'UTR 0.08 TCGA-ZM-AA05-01 12 50393482 50393482 G C RACGAP1 Missense_Mutation p.T222S 0.09 tolerated(0.18) benign(0.043) TCGA-ZM-AA05-01 13 20610939 20610939 A T ZMYM2 Missense_Mutation p.N728Y 0.10 deleterious(0.01) probably_damaging(0.965) TCGA-ZM-AA05-01 16 28883695 28883695 C T SH2B1 Silent p.L566L 0.16 TCGA-ZM-AA05-01 16 3304501 3304501 G T MEFV Silent p.G189G 0.11 TCGA-ZM-AA05-01 16 3830851 3830851 C T CREBBP Missense_Mutation p.G569S 0.12 benign(0.342) TCGA-ZM-AA05-01 17 73568068 73568068 G T LLGL2 Missense_Mutation p.V795L 0.10 tolerated(0.06) benign(0.314) TCGA-ZM-AA05-01 17 77090459 77090459 C T RBFOX3 Intron 0.33 TCGA-ZM-AA05-01 18 44560885 44560885 C T TCEB3B Missense_Mutation p.E251K 0.11 tolerated(0.13) benign(0) TCGA-ZM-AA05-01 19 14675087 14675087 C A TECR Silent p.R159R 0.11 TCGA-ZM-AA05-01 19 1487795 1487795 G C PCSK4 Missense_Mutation p.S194R 0.10 tolerated(0.31) possibly_damaging(0.703) TCGA-ZM-AA05-01 19 52888125 52888125 C T ZNF880 Missense_Mutation p.T431I 0.12 deleterious(0.03) probably_damaging(0.949) TCGA-ZM-AA05-01 1 114523051 114523051 A T OLFML3 Missense_Mutation p.K71M 0.18 deleterious(0.03) probably_damaging(0.968) TCGA-ZM-AA05-01 1 1396296 1396296 C T ATAD3C Missense_Mutation p.R327W 0.14 deleterious(0.04) possibly_damaging(0.696) TCGA-ZM-AA05-01 1 169101270 169101270 T G ATP1B1 3'UTR 0.48 TCGA-ZM-AA05-01 1 185962507 185962507 G T HMCN1 Intron 0.06 TCGA-ZM-AA05-01 1 203819655 203819655 T C ZC3H11A Missense_Mutation p.V651A 0.16 tolerated(0.09) benign(0.351) TCGA-ZM-AA05-01 1 68564463 68564463 C A WLS Intron 0.13 TCGA-ZM-AA05-01 20 45354027 45354027 G A SLC2A10 Missense_Mutation p.A118T 0.06 deleterious(0) probably_damaging(0.993) TCGA-ZM-AA05-01 22 28501285 28501285 C G TTC28 Missense_Mutation p.V1097L 0.10 tolerated(0.13) probably_damaging(0.999) TCGA-ZM-AA05-01 2 113763655 113763655 A G IL36A Missense_Mutation p.M39V 0.04 tolerated(1) benign(0) TCGA-ZM-AA05-01 2 176988212 176988212 C T HOXD9 Missense_Mutation p.S239L 0.11 tolerated(0.08) possibly_damaging(0.468) TCGA-ZM-AA05-01 2 232458946 232458946 C T C2orf57 3'UTR 0.06 TCGA-ZM-AA05-01 3 49840722 49840722 C A FAM212A 5'UTR 0.13 TCGA-ZM-AA05-01 4 114271404 114271404 A C ANK2 Missense_Mutation p.K1475N 0.08 benign(0.36) TCGA-ZM-AA05-01 4 15656950 15656950 C A FBXL5 5'UTR 0.19 TCGA-ZM-AA05-01 4 169146761 169146761 C T DDX60 Missense_Mutation p.E1534K 0.12 tolerated(1) benign(0.005) TCGA-ZM-AA05-01 4 42145741 42145742 AG - BEND4 Frame_Shift_Del p.L253Tfs*19 0.08 TCGA-ZM-AA05-01 6 157100005 157100005 C A ARID1B Silent p.G314G 0.06 TCGA-ZM-AA05-01 6 35960389 35960389 A G SLC26A8 Silent p.S230S 0.13 TCGA-ZM-AA05-01 8 144996952 144996952 G T PLEC Missense_Mutation p.A2519D 0.13 probably_damaging(0.998) TCGA-ZM-AA05-01 8 33449560 33449560 G T DUSP26 Missense_Mutation p.R203S 0.12 tolerated(0.69) unknown(0) TCGA-ZM-AA05-01 X 153187251 153187251 G T ARHGAP4 Missense_Mutation p.Q27K 0.17 deleterious(0) probably_damaging(0.999) TCGA-ZM-AA06-01 11 119149218 119149218 A G CBL Splice_Site p.X410_splice 0.51 TCGA-ZM-AA06-01 12 56995804 56995804 T C BAZ2A Silent p.Q1201Q 0.16 TCGA-ZM-AA06-01 14 21569479 21569479 C G TMEM253 5'UTR 0.20 TCGA-ZM-AA06-01 14 21852156 21852156 G T SUPT16H 5'UTR 0.10 TCGA-ZM-AA06-01 15 66797736 66797736 C G ZWILCH Intron 0.18 TCGA-ZM-AA06-01 16 1634408 1634408 T C IFT140 Missense_Mutation p.K390R 0.22 tolerated(0.35) benign(0.005) TCGA-ZM-AA06-01 19 36135558 36135558 C A ETV2 Missense_Mutation p.A278D 0.14 deleterious(0) possibly_damaging(0.889) TCGA-ZM-AA06-01 19 36727687 36727687 C T ZNF146 Silent p.L115L 0.16 TCGA-ZM-AA06-01 19 38899499 38899499 C T FAM98C Missense_Mutation p.R343C 0.23 deleterious(0) possibly_damaging(0.781) TCGA-ZM-AA06-01 19 4529156 4529156 G A PLIN5 Missense_Mutation p.A150V 0.30 deleterious(0.02) probably_damaging(0.954) TCGA-ZM-AA06-01 19 4529157 4529157 C A PLIN5 Missense_Mutation p.A150S 0.30 tolerated(0.24) possibly_damaging(0.575) TCGA-ZM-AA06-01 19 51020870 51020870 G T LRRC4B Missense_Mutation p.F700L 0.10 tolerated_low_confidence(0.31) benign(0.004) TCGA-ZM-AA06-01 20 35438485 35438485 G T SOGA1 Missense_Mutation p.A828D 0.19 deleterious(0.03) possibly_damaging(0.757) TCGA-ZM-AA06-01 22 46763694 46763694 C T CELSR1 Missense_Mutation p.G2671R 0.23 deleterious(0) probably_damaging(0.995) TCGA-ZM-AA06-01 3 126571534 126571534 C T CHCHD6 Silent p.D152D 0.30 TCGA-ZM-AA06-01 3 128369675 128369675 G A RPN1 5'UTR 0.33 TCGA-ZM-AA06-01 3 142186852 142186852 A G ATR Missense_Mutation p.M2204T 0.42 tolerated(0.29) benign(0.002) TCGA-ZM-AA06-01 3 189597936 189597936 C G TP63 Intron 0.25 TCGA-ZM-AA06-01 5 149915275 149915277 CCA - NDST1 In_Frame_Del p.T423del 0.22 TCGA-ZM-AA06-01 5 2749803 2749803 C T IRX2 Silent p.A116A 0.31 TCGA-ZM-AA06-01 5 78347182 78347182 T G DMGDH Silent p.R225R 0.32 TCGA-ZM-AA06-01 6 110300642 110300642 G T GPR6 Silent p.V109V 0.10 TCGA-ZM-AA06-01 9 86294939 86294940 TC A UBQLN1 Frame_Shift_Del p.G154Vfs*5 0.19 TCGA-ZM-AA06-01 X 32663131 32663131 C A DMD Nonsense_Mutation p.E367* 0.43 TCGA-ZM-AA06-01 X 40506526 40506526 C A CXorf38 Intron 0.41 TCGA-ZM-AA06-01 X 53585984 53585984 C T HUWE1 Nonsense_Mutation p.W2651* 0.41 TCGA-ZM-AA06-01 X 54476099 54476099 T A FGD1 Missense_Mutation p.N714I 0.34 tolerated(0.05) benign(0.4) TCGA-ZM-AA0B-01 11 17352980 17352980 C G NUCB2 3'UTR 0.13 TCGA-ZM-AA0B-01 12 6422218 6422218 G T PLEKHG6 Intron 0.09 TCGA-ZM-AA0B-01 14 63447863 63447863 A G KCNH5 Silent p.I223I 0.17 TCGA-ZM-AA0B-01 14 66028473 66028473 C T FUT8 Silent p.A64A 0.09 TCGA-ZM-AA0B-01 14 75475839 75475839 A G EIF2B2 Missense_Mutation p.Y335C 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZM-AA0B-01 16 4934417 4934417 G T PPL Silent p.R1413R 0.08 TCGA-ZM-AA0B-01 16 57283712 57283712 C T ARL2BP Silent p.L81L 0.11 TCGA-ZM-AA0B-01 17 40925483 40925484 - GGCTACTACGAT VPS25 5'UTR p.A2_M3insTTMA 0.10 TCGA-ZM-AA0B-01 17 65119087 65119087 G C HELZ Missense_Mutation p.P1210R 0.18 deleterious_low_confidence(0) benign(0.132) TCGA-ZM-AA0B-01 19 11597957 11597957 G A ZNF653 Silent p.C396C 0.35 TCGA-ZM-AA0B-01 19 797494 797494 T G PTBP1 5'UTR 0.20 TCGA-ZM-AA0B-01 1 151020692 151020701 GCTTCCCAGT - C1orf56 Frame_Shift_Del p.L124Rfs*14 0.54 TCGA-ZM-AA0B-01 1 17312499 17312499 G A ATP13A2 3'UTR 0.22 TCGA-ZM-AA0B-01 22 38895499 38895499 C G DDX17 Missense_Mutation p.E148D 0.17 tolerated(0.21) benign(0.061) TCGA-ZM-AA0B-01 2 10908882 10908882 C T ATP6V1C2 Missense_Mutation p.T139M 0.16 tolerated(0.06) benign(0.009) TCGA-ZM-AA0B-01 5 134194545 134194545 T - C5orf24 3'UTR 0.26 TCGA-ZM-AA0B-01 6 46621035 46621035 G C SLC25A27 Missense_Mutation p.A36P 0.19 deleterious(0.01) possibly_damaging(0.864) TCGA-ZM-AA0B-01 7 155556646 155556646 G T RBM33 Silent p.G1040G 0.24 TCGA-ZM-AA0B-01 8 144804021 144804021 G A MAPK15 Missense_Mutation p.G477S 0.31 tolerated(0.76) benign(0.011) TCGA-ZM-AA0B-01 9 126132724 126132724 G T CRB2 Missense_Mutation p.R464S 0.06 deleterious(0) benign(0.227) TCGA-ZM-AA0B-01 9 127783012 127783012 T G SCAI Silent p.A206A 0.03 TCGA-ZM-AA0B-01 X 23740077 23740077 G A ACOT9 Missense_Mutation p.P170L 0.26 deleterious(0) possibly_damaging(0.868) TCGA-ZM-AA0D-01 11 121466453 121466453 C A SORL1 Nonsense_Mutation p.C1497* 0.12 TCGA-ZM-AA0D-01 13 95364350 95364350 C T SOX21 5'UTR 0.12 TCGA-ZM-AA0D-01 19 58578438 58578438 A G ZNF135 Missense_Mutation p.R220G 0.05 tolerated(0.2) benign(0.152) TCGA-ZM-AA0D-01 1 50163073 50163073 T C AGBL4 Missense_Mutation p.E65G 0.09 deleterious(0) probably_damaging(0.999) TCGA-ZM-AA0D-01 20 4162476 4162476 C - SMOX Frame_Shift_Del p.R155Gfs*39 0.09 TCGA-ZM-AA0D-01 20 50408195 50408195 C T SALL4 Missense_Mutation p.S276N 0.11 tolerated(0.06) benign(0.017) TCGA-ZM-AA0D-01 2 109382856 109382856 C T RANBP2 Missense_Mutation p.T1954I 0.07 deleterious(0.05) possibly_damaging(0.791) TCGA-ZM-AA0D-01 4 55599320 55599320 G T KIT Missense_Mutation p.D816Y 0.10 deleterious(0) probably_damaging(0.963) TCGA-ZM-AA0D-01 4 7044591 7044591 C T CCDC96 Silent p.P25P 0.12 TCGA-ZM-AA0D-01 9 96024344 96024344 C T WNK2 Silent p.A1105A 0.07 TCGA-ZM-AA0D-01 X 128625996 128625996 G A SMARCA1 Silent p.L579L 0.12 TCGA-ZM-AA0E-01 10 99330294 99330294 C A UBTD1 3'UTR 0.16 TCGA-ZM-AA0E-01 11 57505458 57505458 G A TMX2 Silent p.L108L 0.15 TCGA-ZM-AA0E-01 11 78780952 78780952 G C TENM4 Missense_Mutation p.T13S 0.16 tolerated_low_confidence(0.6) benign(0.06) TCGA-ZM-AA0E-01 17 39406580 39406580 T A KRTAP9-4 3'UTR 0.12 TCGA-ZM-AA0E-01 19 10291231 10291231 A G DNMT1 Silent p.A80A 0.12 TCGA-ZM-AA0E-01 19 58904766 58904766 G T RPS5 Missense_Mutation p.G120V 0.23 deleterious(0.01) probably_damaging(1) TCGA-ZM-AA0E-01 1 147084715 147084715 T C BCL9 Silent p.R29R 0.05 TCGA-ZM-AA0E-01 20 52194891 52194891 G A ZNF217 Missense_Mutation p.H489Y 0.08 deleterious(0) probably_damaging(1) TCGA-ZM-AA0E-01 2 90212209 90212209 G A IGKV3D-11 Missense_Mutation p.E101K 0.11 deleterious(0.01) possibly_damaging(0.889) TCGA-ZM-AA0E-01 4 154625737 154625737 G A TLR2 Missense_Mutation p.A560T 0.07 deleterious(0.04) benign(0.002) TCGA-ZM-AA0E-01 8 17157243 17157243 T C MTMR7 3'UTR 0.14 TCGA-ZM-AA0F-01 19 33247972 33247972 A G TDRD12 Silent p.Q267Q 0.08 TCGA-ZM-AA0F-01 19 45130819 45130819 G A IGSF23 Missense_Mutation p.G165E 0.05 deleterious(0) probably_damaging(0.988) TCGA-ZM-AA0F-01 1 204378635 204378636 AT - PPP1R15B Frame_Shift_Del p.H635Rfs*10 0.08 TCGA-ZM-AA0F-01 1 225539365 225539365 T C DNAH14 Silent p.G2875G 0.08 TCGA-ZM-AA0F-01 20 2443617 2443617 A G SNRPB Intron 0.06 TCGA-ZM-AA0F-01 2 58316816 58316816 A G VRK2 Missense_Mutation p.I167M 0.03 deleterious(0) probably_damaging(0.991) TCGA-ZM-AA0F-01 3 18458414 18458414 C T SATB1 Missense_Mutation p.S123N 0.05 tolerated(0.07) probably_damaging(0.969) TCGA-ZM-AA0F-01 4 55593628 55593654 GAAACAATTATGTTTACATAGACCCAA - KIT In_Frame_Del p.G565_T574delinsA 0.09 TCGA-ZM-AA0H-01 10 73956741 73956741 G T ASCC1 Missense_Mutation p.T134N 0.05 deleterious(0) probably_damaging(0.953) TCGA-ZM-AA0H-01 11 65487072 65487072 G A KAT5 3'UTR 0.18 TCGA-ZM-AA0H-01 11 65487762 65487762 C A RNASEH2C Missense_Mutation p.R100L 0.18 tolerated_low_confidence(0.3) benign(0.192) TCGA-ZM-AA0H-01 12 14930282 14930282 A T H2AFJ 3'UTR 0.05 TCGA-ZM-AA0H-01 12 57965876 57965876 G A KIF5A Silent p.K465K 0.07 TCGA-ZM-AA0H-01 12 63225974 63225974 T A PPM1H Missense_Mutation p.T111S 0.16 tolerated(0.9) benign(0.001) TCGA-ZM-AA0H-01 12 78591111 78591111 G C NAV3 Missense_Mutation p.D2104H 0.14 deleterious(0) probably_damaging(1) TCGA-ZM-AA0H-01 12 8023650 8023650 G A SLC2A14 5'UTR 0.12 TCGA-ZM-AA0H-01 14 93305859 93305859 G A GOLGA5 3'UTR 0.10 TCGA-ZM-AA0H-01 15 41308347 41308347 T G INO80 Missense_Mutation p.K1114T 0.15 deleterious(0) probably_damaging(0.949) TCGA-ZM-AA0H-01 16 2086857 2086857 C G SLC9A3R2 Silent p.V241V 0.08 TCGA-ZM-AA0H-01 16 2312409 2312409 G T RNPS1 Silent p.S182S 0.23 TCGA-ZM-AA0H-01 16 89789843 89789843 C G ZNF276 Silent p.T244T 0.08 TCGA-ZM-AA0H-01 17 46507464 46507464 G A SKAP1 Missense_Mutation p.P7S 0.08 tolerated(0.05) benign(0.057) TCGA-ZM-AA0H-01 17 73509845 73509845 C G CASKIN2 Missense_Mutation p.G14A 0.16 tolerated(0.08) probably_damaging(0.995) TCGA-ZM-AA0H-01 18 29672717 29672717 G T RNF138 5'UTR 0.24 TCGA-ZM-AA0H-01 18 32888830 32888830 T G ZNF271 RNA 0.12 TCGA-ZM-AA0H-01 18 33696734 33696734 C T SLC39A6 Silent p.K456K 0.16 TCGA-ZM-AA0H-01 19 11534699 11534699 C G CCDC151 Splice_Site p.X322_splice 0.12 TCGA-ZM-AA0H-01 19 38779803 38779807 CCACT - SPINT2 Frame_Shift_Del p.H122Qfs*7 0.09 TCGA-ZM-AA0H-01 19 42599534 42599534 G A POU2F2 Silent p.F345F 0.13 TCGA-ZM-AA0H-01 1 107866930 107866930 G A NTNG1 Silent p.E91E 0.06 TCGA-ZM-AA0H-01 1 116670202 116670202 G T MAB21L3 Missense_Mutation p.K199N 0.10 tolerated(0.18) benign(0.261) TCGA-ZM-AA0H-01 1 1431185 1431185 C A ATAD3B Missense_Mutation p.H645Q 0.12 deleterious_low_confidence(0.02) benign(0.004) TCGA-ZM-AA0H-01 1 145365393 145365393 C G NBPF10 Missense_Mutation p.Q3340E 0.11 possibly_damaging(0.899) TCGA-ZM-AA0H-01 1 156216033 156216033 C A PAQR6 5'UTR 0.05 TCGA-ZM-AA0H-01 1 173802622 173802622 C A DARS2 Missense_Mutation p.L201I 0.11 deleterious(0) probably_damaging(0.994) TCGA-ZM-AA0H-01 1 179851685 179851685 T G TOR1AIP1 Silent p.G16G 0.29 TCGA-ZM-AA0H-01 1 27736390 27736390 G A WASF2 Missense_Mutation p.P379S 0.13 tolerated(0.14) unknown(0) TCGA-ZM-AA0H-01 1 71512740 71512740 G A PTGER3 Missense_Mutation p.T174I 0.16 deleterious(0.01) probably_damaging(0.998) TCGA-ZM-AA0H-01 20 62573996 62573996 G C UCKL1 Intron 0.11 TCGA-ZM-AA0H-01 21 34889725 34889725 C T GART Silent p.V631V 0.08 TCGA-ZM-AA0H-01 21 38468893 38468893 C T TTC3 Silent p.Y265Y 0.10 TCGA-ZM-AA0H-01 2 141093382 141093382 T C LRP1B Missense_Mutation p.D3973G 0.11 possibly_damaging(0.539) TCGA-ZM-AA0H-01 2 37235845 37235845 T C HEATR5B Silent p.L1477L 0.11 TCGA-ZM-AA0H-01 2 55479643 55479643 C T MTIF2 Missense_Mutation p.E271K 0.18 deleterious(0) probably_damaging(1) TCGA-ZM-AA0H-01 2 9727624 9727624 G A YWHAQ Silent p.A199A 0.12 TCGA-ZM-AA0H-01 3 10417235 10417235 C G ATP2B2 Missense_Mutation p.C432S 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-ZM-AA0H-01 4 138452613 138452613 T G PCDH18 Silent p.S210S 0.10 TCGA-ZM-AA0H-01 4 183664532 183664532 A T TENM3 Missense_Mutation p.I1197L 0.21 tolerated(0.05) benign(0.141) TCGA-ZM-AA0H-01 4 41615586 41615586 G T LIMCH1 Missense_Mutation p.G197V 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-ZM-AA0H-01 4 42145560 42145560 C T BEND4 Silent p.E313E 0.05 TCGA-ZM-AA0H-01 4 55602664 55602664 G C KIT Missense_Mutation p.A829P 0.23 deleterious(0) possibly_damaging(0.855) TCGA-ZM-AA0H-01 5 98234123 98234123 T A CHD1 Missense_Mutation p.K401M 0.17 deleterious(0.04) benign(0.124) TCGA-ZM-AA0H-01 6 160445736 160445736 G T IGF2R Missense_Mutation p.D216Y 0.05 deleterious(0.01) possibly_damaging(0.905) TCGA-ZM-AA0H-01 6 168276034 168276034 G A MLLT4 Missense_Mutation p.A200T 0.11 tolerated(0.06) possibly_damaging(0.812) TCGA-ZM-AA0H-01 6 26045967 26045968 TG - HIST1H3C Frame_Shift_Del p.C111Rfs*5 0.12 TCGA-ZM-AA0H-01 6 27419641 27419641 G A ZNF184 Missense_Mutation p.T566I 0.14 deleterious(0.01) possibly_damaging(0.805) TCGA-ZM-AA0H-01 6 33139321 33139321 G T COL11A2 Silent p.R975R 0.08 TCGA-ZM-AA0H-01 8 30209831 30209831 A C TUBBP1 RNA 0.06 TCGA-ZM-AA0H-01 8 37756869 37756869 G A RAB11FIP1 Missense_Mutation p.R31W 0.11 deleterious(0) probably_damaging(0.989) TCGA-ZM-AA0H-01 8 42798490 42798490 C G HOOK3 Missense_Mutation p.P101R 0.08 deleterious(0) probably_damaging(1) TCGA-ZM-AA0N-01 10 134663865 134663865 G A TTC40 Silent p.S1945S 0.11 TCGA-ZM-AA0N-01 11 64786160 64786160 C T ARL2 Silent p.R98R 0.15 TCGA-ZM-AA0N-01 11 76726118 76726118 T C ACER3 Missense_Mutation p.F186L 0.19 deleterious(0) probably_damaging(0.999) TCGA-ZM-AA0N-01 11 88338026 88338026 G A GRM5 Silent p.L418L 0.16 TCGA-ZM-AA0N-01 15 41064073 41064073 G A C15orf62 3'UTR 0.16 TCGA-ZM-AA0N-01 19 16263920 16263920 G A HSH2D 3'UTR 0.19 TCGA-ZM-AA0N-01 19 49442835 49442835 G C DHDH Missense_Mutation p.D166H 0.15 deleterious(0.05) possibly_damaging(0.676) TCGA-ZM-AA0N-01 19 54942000 54942000 C T TTYH1 Silent p.L317L 0.07 TCGA-ZM-AA0N-01 1 110300454 110300454 G T EPS8L3 Missense_Mutation p.F289L 0.16 tolerated(0.15) benign(0.163) TCGA-ZM-AA0N-01 1 186276725 186276725 C T PRG4 Missense_Mutation p.T625M 0.11 unknown(0) TCGA-ZM-AA0N-01 22 29654850 29654850 C A EMID1 Missense_Mutation p.P417T 0.11 tolerated(0.09) probably_damaging(0.999) TCGA-ZM-AA0N-01 2 219209706 219209706 G A PNKD 3'UTR 0.07 TCGA-ZM-AA0N-01 3 47422576 47422576 T G PTPN23 5'UTR 0.24 TCGA-ZM-AA0N-01 3 49146542 49146542 C T USP19 Missense_Mutation p.G1370E 0.15 tolerated_low_confidence(0.55) benign(0.4) TCGA-ZM-AA0N-01 3 57631406 57631406 G C DENND6A Missense_Mutation p.T340S 0.22 deleterious(0.03) probably_damaging(0.994) TCGA-ZM-AA0N-01 5 140555725 140555725 T A PCDHB7 3'UTR 0.11 TCGA-ZM-AA0N-01 5 161528257 161528257 G A GABRG2 Missense_Mutation p.E189K 0.15 deleterious(0.02) probably_damaging(0.997) TCGA-ZM-AA0N-01 6 107389963 107389963 C T BEND3 Missense_Mutation p.R811H 0.18 deleterious(0) probably_damaging(1) TCGA-ZM-AA0N-01 6 54806767 54806767 A G FAM83B Missense_Mutation p.M1000V 0.15 tolerated(0.06) benign(0.008) TCGA-ZM-AA0N-01 7 87780609 87780609 G C ADAM22 Missense_Mutation p.R552T 0.07 tolerated(0.12) possibly_damaging(0.75) TCGA-ZM-AA0N-01 8 20005148 20005148 G A SLC18A1 Silent p.I432I 0.07 TCGA-ZM-AA0N-01 8 75272458 75272458 A T GDAP1 Missense_Mutation p.M133L 0.11 tolerated(0.12) benign(0.022) TCGA-ZM-AA0N-01 9 131051082 131051083 AG - SWI5 3'UTR 0.19