sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-4C-A93U-01 10 101090713 101090713 G C CNNM1 Missense_Mutation p.K523N 0.39 deleterious(0) probably_damaging(1) TCGA-4C-A93U-01 10 102749139 102749139 G A C10orf2 Missense_Mutation p.R391H 0.38 deleterious(0.04) benign(0.013) TCGA-4C-A93U-01 10 135179592 135179592 G C ECHS1 Silent p.V209V 0.39 TCGA-4C-A93U-01 10 27382395 27382395 A T ANKRD26 Missense_Mutation p.D138E 0.28 deleterious(0) benign(0.324) TCGA-4C-A93U-01 10 5842629 5842629 T C GDI2 Missense_Mutation p.K29E 0.32 deleterious(0) possibly_damaging(0.839) TCGA-4C-A93U-01 10 71906377 71906377 G A TYSND1 5'Flank 0.53 TCGA-4C-A93U-01 10 73826823 73826823 G A SPOCK2 Silent p.S255S 0.29 TCGA-4C-A93U-01 10 73826824 73826824 G A SPOCK2 Missense_Mutation p.S255F 0.29 deleterious(0) probably_damaging(0.951) TCGA-4C-A93U-01 10 73826826 73826826 G A SPOCK2 Silent p.F254F 0.28 TCGA-4C-A93U-01 10 76735311 76735311 C T KAT6B Missense_Mutation p.R406W 0.22 benign(0.006) TCGA-4C-A93U-01 11 118399446 118399446 G A TTC36 Missense_Mutation p.E83K 0.26 tolerated(0.24) benign(0.328) TCGA-4C-A93U-01 11 33612907 33612907 G C KIAA1549L Missense_Mutation p.R1267T 0.39 deleterious(0) probably_damaging(0.998) TCGA-4C-A93U-01 11 61895702 61895702 C T INCENP Silent p.L23L 0.37 TCGA-4C-A93U-01 11 8013700 8013700 A G EIF3F Missense_Mutation p.I169V 0.35 tolerated(0.12) possibly_damaging(0.588) TCGA-4C-A93U-01 11 94277440 94277440 G A FUT4 Silent p.V47V 0.43 TCGA-4C-A93U-01 12 112230404 112230404 G T ALDH2 Missense_Mutation p.D301Y 0.39 deleterious(0) possibly_damaging(0.864) TCGA-4C-A93U-01 12 46215248 46215257 AGACTGATAG - ARID2 Frame_Shift_Del p.D230Sfs*59 0.26 TCGA-4C-A93U-01 12 49054304 49054304 G A KANSL2 Missense_Mutation p.P358S 0.48 tolerated(0.26) benign(0.349) TCGA-4C-A93U-01 13 36905542 36905542 C T SPG20 Silent p.R334R 0.39 TCGA-4C-A93U-01 13 96439369 96439369 C T DNAJC3 Silent p.F439F 0.31 TCGA-4C-A93U-01 15 34140563 34140563 C T RYR3 Silent p.T4523T 0.26 TCGA-4C-A93U-01 15 42740457 42740457 C G ZNF106 Missense_Mutation p.R960T 0.39 tolerated(0.59) benign(0.05) TCGA-4C-A93U-01 15 63908060 63908060 G A HERC1 Silent p.I4667I 0.29 TCGA-4C-A93U-01 15 90349724 90349724 C T ANPEP Missense_Mutation p.V31M 0.35 deleterious(0) probably_damaging(0.96) TCGA-4C-A93U-01 16 48125076 48125076 C T ABCC12 Silent p.T1080T 0.37 TCGA-4C-A93U-01 17 18145214 18145214 C T LLGL1 Missense_Mutation p.S928F 0.21 deleterious(0) probably_damaging(0.984) TCGA-4C-A93U-01 17 40822615 40822615 G A PLEKHH3 Silent p.H510H 0.41 TCGA-4C-A93U-01 17 61988351 61988351 G C CSHL1 Intron 0.50 TCGA-4C-A93U-01 19 12816128 12816128 C T TNPO2 Missense_Mutation p.E650K 0.62 deleterious(0.04) possibly_damaging(0.804) TCGA-4C-A93U-01 19 1811611 1811611 C G ATP8B3 Missense_Mutation p.G42A 0.26 tolerated_low_confidence(0.24) benign(0.011) TCGA-4C-A93U-01 19 36501939 36501939 G A ALKBH6 Missense_Mutation p.P93S 0.39 deleterious(0.02) probably_damaging(0.995) TCGA-4C-A93U-01 1 109337503 109337503 A G STXBP3 Missense_Mutation p.I362V 0.30 tolerated(1) benign(0.015) TCGA-4C-A93U-01 1 11155844 11155844 C G EXOSC10 Missense_Mutation p.D115H 0.30 deleterious(0) probably_damaging(0.961) TCGA-4C-A93U-01 1 151263451 151263451 G C ZNF687 Missense_Mutation p.K1160N 0.20 deleterious(0.03) benign(0.197) TCGA-4C-A93U-01 1 161183498 161183498 C T NDUFS2 Silent p.I424I 0.24 TCGA-4C-A93U-01 1 237794725 237794725 A G RYR2 Splice_Site p.X2147_splice 0.56 TCGA-4C-A93U-01 1 38280866 38280866 A G MTF1 Missense_Mutation p.I735T 0.40 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-4C-A93U-01 20 13753238 13753238 C T ESF1 Silent p.K391K 0.14 TCGA-4C-A93U-01 20 58349367 58349367 C T PHACTR3 Silent p.S332S 0.38 TCGA-4C-A93U-01 20 62839704 62839704 C T MYT1 Silent p.I385I 0.33 TCGA-4C-A93U-01 21 35895881 35895881 T C RCAN1 Missense_Mutation p.H127R 0.38 deleterious(0) probably_damaging(0.915) TCGA-4C-A93U-01 2 125175105 125175105 C T CNTNAP5 Missense_Mutation p.P156L 0.29 deleterious(0) probably_damaging(1) TCGA-4C-A93U-01 2 162274722 162274722 C G TBR1 Silent p.V286V 0.31 TCGA-4C-A93U-01 2 198949565 198949565 G A PLCL1 Missense_Mutation p.V442I 0.25 tolerated(0.59) benign(0.078) TCGA-4C-A93U-01 2 202003062 202003062 C T CFLAR Intron 0.29 TCGA-4C-A93U-01 2 216226297 216226297 C A FN1 Missense_Mutation p.R2472I 0.29 tolerated_low_confidence(0.05) benign(0.003) TCGA-4C-A93U-01 2 216226313 216226313 C T FN1 Missense_Mutation p.D2467N 0.30 deleterious(0.02) benign(0.341) TCGA-4C-A93U-01 2 227871762 227871762 A T COL4A4 3'UTR 0.33 TCGA-4C-A93U-01 2 227871780 227871780 A C COL4A4 3'UTR 0.39 TCGA-4C-A93U-01 2 74757203 74757203 C T HTRA2 Missense_Mutation p.R24C 0.32 tolerated_low_confidence(0.16) benign(0.001) TCGA-4C-A93U-01 2 99767011 99767011 C G C2ORF15 Nonsense_Mutation p.S31* 0.31 TCGA-4C-A93U-01 3 121264791 121264791 G T POLQ 5'UTR 0.33 TCGA-4C-A93U-01 3 129034703 129034703 C T H1FX Missense_Mutation p.E15K 0.23 tolerated(0.25) benign(0.03) TCGA-4C-A93U-01 3 132231901 132231901 C T DNAJC13 Silent p.L1781L 0.24 TCGA-4C-A93U-01 3 14862664 14862664 G C FGD5 Missense_Mutation p.D696H 0.30 deleterious(0.02) benign(0.059) TCGA-4C-A93U-01 4 184922519 184922519 C T STOX2 Nonsense_Mutation p.Q70* 0.28 TCGA-4C-A93U-01 4 186366679 186366680 - T CCDC110 Frame_Shift_Ins p.D827Rfs*25 0.24 TCGA-4C-A93U-01 5 150076426 150076426 C T RBM22 Missense_Mutation p.G100E 0.33 tolerated(0.1) benign(0.004) TCGA-4C-A93U-01 5 36253804 36253804 A T RANBP3L Missense_Mutation p.V396E 0.29 deleterious(0) possibly_damaging(0.633) TCGA-4C-A93U-01 5 38944564 38944564 C T RICTOR Missense_Mutation p.E1633K 0.28 deleterious(0) probably_damaging(0.997) TCGA-4C-A93U-01 5 56178173 56178173 C G MAP3K1 Nonsense_Mutation p.S1049* 0.40 TCGA-4C-A93U-01 6 106967568 106967568 G A AIM1 Missense_Mutation p.E421K 0.26 tolerated_low_confidence(0.08) benign(0.015) TCGA-4C-A93U-01 6 27778092 27778092 A G HIST1H3H Missense_Mutation p.T81A 0.39 deleterious_low_confidence(0.03) benign(0.004) TCGA-4C-A93U-01 7 11457095 11457095 T A THSD7A Silent p.P1173P 0.12 TCGA-4C-A93U-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-4C-A93U-01 7 15725715 15725715 G C MEOX2 Missense_Mutation p.R105G 0.40 tolerated(0.22) probably_damaging(0.972) TCGA-4C-A93U-01 8 100523650 100523650 A T VPS13B Missense_Mutation p.T1540S 0.47 tolerated(0.28) possibly_damaging(0.899) TCGA-4C-A93U-01 8 12990524 12990524 G A DLC1 Intron 0.33 TCGA-4C-A93U-01 8 52233422 52233422 C T PXDNL Silent p.G1394G 0.39 TCGA-4C-A93U-01 9 21971120 21971120 G A CDKN2A Nonsense_Mutation p.R80* 0.31 TCGA-4C-A93U-01 X 119374187 119374187 G C NKAPP1 RNA 0.36 TCGA-4C-A93U-01 X 40489792 40489792 C G CXorf38 Intron 0.41 TCGA-4C-A93U-01 X 84519424 84519424 G A ZNF711 Missense_Mutation p.D256N 0.34 deleterious(0) probably_damaging(0.992) TCGA-BJ-A0YZ-01 10 103735059 103735059 T C C10orf76 Splice_Site p.X469_splice 0.28 TCGA-BJ-A0YZ-01 10 49409405 49409405 C T FRMPD2 Missense_Mutation p.S607N 0.23 deleterious(0.01) probably_damaging(1) TCGA-BJ-A0YZ-01 11 58190019 58190019 C T OR5B2 Missense_Mutation p.C239Y 0.31 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-BJ-A0YZ-01 11 74800585 74800585 G T OR2AT4 Silent p.P58P 0.06 TCGA-BJ-A0YZ-01 12 96310945 96310945 A C CCDC38 Missense_Mutation p.F89C 0.06 tolerated(0.16) possibly_damaging(0.706) TCGA-BJ-A0YZ-01 14 20869182 20869182 G T TEP1 Missense_Mutation p.L504I 0.33 deleterious(0.03) probably_damaging(0.938) TCGA-BJ-A0YZ-01 16 364573 364573 G A AXIN1 Missense_Mutation p.A330V 0.20 tolerated(0.11) possibly_damaging(0.877) TCGA-BJ-A0YZ-01 16 61687826 61687826 G C CDH8 Missense_Mutation p.P696A 0.17 tolerated(0.57) probably_damaging(0.998) TCGA-BJ-A0YZ-01 19 57967438 57967438 G C VN1R1 Missense_Mutation p.I139M 0.15 deleterious(0.01) probably_damaging(0.917) TCGA-BJ-A0YZ-01 19 57967675 57967675 G A VN1R1 Silent p.I60I 0.14 TCGA-BJ-A0YZ-01 19 57967712 57967712 G A VN1R1 Missense_Mutation p.S48L 0.15 tolerated(0.92) benign(0) TCGA-BJ-A0YZ-01 2 166894497 166894497 A G SCN1A Missense_Mutation p.F912S 0.23 deleterious(0) probably_damaging(0.989) TCGA-BJ-A0YZ-01 3 183777748 183777748 A T HTR3C Missense_Mutation p.H353L 0.32 tolerated(0.21) benign(0.008) TCGA-BJ-A0YZ-01 3 27332763 27332763 C G NEK10 Missense_Mutation p.C532S 0.15 tolerated(1) benign(0.002) TCGA-BJ-A0YZ-01 5 13751210 13751210 T C DNAH5 Missense_Mutation p.R3730G 0.32 benign(0.415) TCGA-BJ-A0YZ-01 6 128540102 128540102 G A PTPRK Missense_Mutation p.S278F 0.20 deleterious(0.02) probably_damaging(0.992) TCGA-BJ-A0YZ-01 6 15520515 15520516 - A JARID2 3'UTR 0.21 TCGA-BJ-A0YZ-01 6 38029485 38029485 A G ZFAND3 Missense_Mutation p.T77A 0.22 tolerated(0.86) benign(0) TCGA-BJ-A0YZ-01 7 32110108 32110108 G C PDE1C Intron 0.23 TCGA-BJ-A0YZ-01 7 40899976 40899976 G A SUGCT Silent p.G438G 0.04 TCGA-BJ-A0YZ-01 9 119159055 119159055 G T PAPPA 3'UTR 0.33 TCGA-BJ-A0YZ-01 9 95797678 95797678 C T FGD3 Missense_Mutation p.P662L 0.36 tolerated(0.14) benign(0.085) TCGA-BJ-A0YZ-01 Y 15024673 15024673 A G DDX3Y Missense_Mutation p.I106V 0.05 tolerated(0.5) benign(0.001) TCGA-BJ-A0Z0-01 10 134648162 134648162 C T TTC40 Missense_Mutation p.A2288T 0.21 tolerated(0.53) benign(0.085) TCGA-BJ-A0Z0-01 10 89692932 89692932 T A PTEN Nonsense_Mutation p.L139* 0.22 TCGA-BJ-A0Z0-01 10 89711928 89711928 A - PTEN Frame_Shift_Del p.K183Rfs*16 0.39 TCGA-BJ-A0Z0-01 11 22646539 22646539 A C FANCF Missense_Mutation p.V273G 0.03 tolerated(0.46) benign(0.016) TCGA-BJ-A0Z0-01 11 5653565 5653565 G C TRIM34 Missense_Mutation p.A2P 0.15 deleterious(0.01) possibly_damaging(0.602) TCGA-BJ-A0Z0-01 15 25327830 25327830 G A SNORD116-18 5'Flank 0.38 TCGA-BJ-A0Z0-01 15 86697783 86697783 G T AGBL1 Missense_Mutation p.A83S 0.13 tolerated(0.66) possibly_damaging(0.666) TCGA-BJ-A0Z0-01 15 98982901 98982901 C T FAM169B Missense_Mutation p.A180T 0.17 tolerated_low_confidence(0.1) benign(0.01) TCGA-BJ-A0Z0-01 16 33020702 33020702 T G IGHV3OR16-8 Missense_Mutation p.L37R 0.29 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-BJ-A0Z0-01 16 69279566 69279566 G A SNTB2 Silent p.P214P 0.30 TCGA-BJ-A0Z0-01 18 44560437 44560437 C T TCEB3B Missense_Mutation p.G400E 0.22 tolerated(0.07) benign(0.319) TCGA-BJ-A0Z0-01 19 36674128 36674128 C G ZNF565 Missense_Mutation p.G247A 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-BJ-A0Z0-01 19 40366101 40366101 T C FCGBP Silent p.A4711A 0.30 TCGA-BJ-A0Z0-01 1 155029547 155029547 C T ADAM15 Missense_Mutation p.A373V 0.17 tolerated(0.18) benign(0.248) TCGA-BJ-A0Z0-01 1 193038698 193038698 A G TROVE2 Missense_Mutation p.K172E 0.25 deleterious(0.02) probably_damaging(0.945) TCGA-BJ-A0Z0-01 1 21928276 21928276 G A RAP1GAP Missense_Mutation p.A582V 0.15 tolerated(0.18) benign(0.133) TCGA-BJ-A0Z0-01 1 40092678 40092678 G A HEYL Missense_Mutation p.S163L 0.44 tolerated(0.1) benign(0.011) TCGA-BJ-A0Z0-01 22 50961303 50961303 G T NCAPH2 Missense_Mutation p.Q494H 0.07 deleterious(0.03) probably_damaging(0.93) TCGA-BJ-A0Z0-01 2 201719735 201719735 C A CLK1 Missense_Mutation p.V420L 0.39 tolerated(1) benign(0.008) TCGA-BJ-A0Z0-01 2 207026959 207026959 G A EEF1B2 Intron 0.03 TCGA-BJ-A0Z0-01 4 110454843 110454843 T A SEC24B Splice_Site p.X1196_splice 0.12 TCGA-BJ-A0Z0-01 4 40113746 40113746 A G N4BP2 Missense_Mutation p.D514G 0.48 deleterious(0) probably_damaging(1) TCGA-BJ-A0Z0-01 4 71339788 71339788 T C MUC7 Missense_Mutation p.F17S 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-BJ-A0Z0-01 4 77660335 77660335 G C SHROOM3 Missense_Mutation p.A337P 0.32 deleterious(0.02) possibly_damaging(0.543) TCGA-BJ-A0Z0-01 4 77661752 77661752 A T SHROOM3 Missense_Mutation p.Y809F 0.25 tolerated(0.06) possibly_damaging(0.494) TCGA-BJ-A0Z0-01 5 140433491 140433491 G T PCDHB1 Missense_Mutation p.Q812H 0.17 deleterious_low_confidence(0.02) benign(0.243) TCGA-BJ-A0Z0-01 5 154280951 154280951 T A GEMIN5 Missense_Mutation p.I988F 0.45 deleterious(0) possibly_damaging(0.898) TCGA-BJ-A0Z0-01 5 70805633 70805633 T C BDP1 Missense_Mutation p.M905T 0.26 tolerated(1) benign(0) TCGA-BJ-A0Z0-01 5 72419162 72419162 A G TMEM171 5'UTR 0.05 TCGA-BJ-A0Z0-01 6 34985798 34985820 CTAGAGAAGTCACCCTCCTTCGC - ANKS1A Frame_Shift_Del p.E659Gfs*4 0.26 TCGA-BJ-A0Z0-01 7 23349054 23349054 T C MALSU1 Silent p.Y199Y 0.08 TCGA-BJ-A0Z0-01 7 2402702 2402702 C G EIF3B Intron 0.14 TCGA-BJ-A0Z0-01 8 120575209 120575209 C T ENPP2 Missense_Mutation p.S822N 0.10 deleterious(0) benign(0.34) TCGA-BJ-A0Z0-01 8 133894135 133894135 T C TG Silent p.S222S 0.33 TCGA-BJ-A0Z0-01 8 48749054 48749054 C T PRKDC Missense_Mutation p.S2598N 0.10 benign(0.059) TCGA-BJ-A0Z0-01 9 131112771 131112771 G A SLC27A4 Missense_Mutation p.R265H 0.06 tolerated(0.53) probably_damaging(1) TCGA-BJ-A0Z2-01 11 1275535 1275535 A T MUC5B Missense_Mutation p.D5144V 0.43 unknown(0) TCGA-BJ-A0Z2-01 11 17144297 17144297 A G PIK3C2A Silent p.P821P 0.08 TCGA-BJ-A0Z2-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.37 tolerated(0.07) benign(0.069) TCGA-BJ-A0Z2-01 11 65269981 65269984 TTGT - MALAT1 RNA 0.36 TCGA-BJ-A0Z2-01 12 20799741 20799741 A T PDE3A Missense_Mutation p.N808Y 0.46 tolerated(0.18) benign(0.016) TCGA-BJ-A0Z2-01 12 56397583 56397583 G - SUOX Frame_Shift_Del p.A138Pfs*23 0.36 TCGA-BJ-A0Z2-01 14 30066788 30066788 G C PRKD1 Missense_Mutation p.F781L 0.48 deleterious(0.02) possibly_damaging(0.46) TCGA-BJ-A0Z2-01 17 47375973 47375973 C A ZNF652 Silent p.R541R 0.41 TCGA-BJ-A0Z2-01 18 14542921 14542921 G A POTEC Silent p.S75S 0.31 TCGA-BJ-A0Z2-01 19 9049457 9049457 G C MUC16 Missense_Mutation p.P10725R 0.43 benign(0.007) TCGA-BJ-A0Z2-01 1 19420477 19420477 C A UBR4 Missense_Mutation p.V4635L 0.38 probably_damaging(0.935) TCGA-BJ-A0Z2-01 1 247586597 247586597 T C NLRP3 Missense_Mutation p.W117R 0.46 tolerated(0.57) benign(0.014) TCGA-BJ-A0Z2-01 1 43296253 43296253 G A ERMAP Intron 0.05 TCGA-BJ-A0Z2-01 2 70121125 70121125 C T SNRNP27 Silent p.R3R 0.50 TCGA-BJ-A0Z2-01 7 100473244 100473267 GCGCAGGGACAAGTTCAGAAGAGA - SRRT In_Frame_Del p.R13_R20del 0.10 TCGA-BJ-A0Z2-01 7 128588864 128588864 A T IRF5 Missense_Mutation p.M513L 0.50 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-BJ-A0Z2-01 7 141420816 141420816 A T WEE2 Silent p.A280A 0.51 TCGA-BJ-A0Z2-01 7 81594935 81594935 G T CACNA2D1 Missense_Mutation p.A850E 0.36 deleterious(0.01) benign(0.009) TCGA-BJ-A0Z2-01 7 81594936 81594936 C T CACNA2D1 Missense_Mutation p.A850T 0.36 tolerated(0.19) benign(0.017) TCGA-BJ-A0Z2-01 8 100548875 100548875 A T VPS13B Intron 0.44 TCGA-BJ-A0Z2-01 8 27294958 27294958 G A PTK2B Missense_Mutation p.G491D 0.42 deleterious(0) probably_damaging(1) TCGA-BJ-A0Z2-01 8 38021127 38021127 T A LSM1 3'UTR 0.50 TCGA-BJ-A0Z2-01 9 100845135 100845135 A C NANS Missense_Mutation p.K293T 0.44 deleterious(0.04) possibly_damaging(0.831) TCGA-BJ-A0Z2-01 9 35906344 35906344 G A HRCT1 Silent p.A20A 0.09 TCGA-BJ-A0Z2-01 X 73963336 73963336 A C KIAA2022 Missense_Mutation p.S352R 0.05 deleterious_low_confidence(0.04) benign(0.394) TCGA-BJ-A0Z3-01 19 6682003 6682003 C T C3 Silent p.E1433E 0.26 TCGA-BJ-A0Z3-01 22 29835022 29835022 G C RFPL1 Missense_Mutation p.C81S 0.21 deleterious(0.02) possibly_damaging(0.539) TCGA-BJ-A0Z3-01 2 234389870 234389870 C T USP40 Missense_Mutation p.R1204Q 0.12 tolerated(0.65) benign(0.001) TCGA-BJ-A0Z3-01 3 41280717 41280717 C A CTNNB1 Missense_Mutation p.P744T 0.06 tolerated_low_confidence(0.21) benign(0.034) TCGA-BJ-A0Z3-01 3 42727577 42727577 T A KLHL40 Missense_Mutation p.I156N 0.12 deleterious(0) probably_damaging(0.981) TCGA-BJ-A0Z3-01 3 50368106 50368106 C T RASSF1 Missense_Mutation p.R314Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-BJ-A0Z3-01 5 35800129 35800129 G A SPEF2 Silent p.Q1630Q 0.03 TCGA-BJ-A0Z3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-BJ-A0Z9-01 11 101951999 101951999 A C C11orf70 Missense_Mutation p.K221T 0.26 deleterious(0) probably_damaging(0.989) TCGA-BJ-A0Z9-01 17 465847 465847 T C VPS53 Silent p.Q484Q 0.09 TCGA-BJ-A0Z9-01 19 50455611 50455611 G A SIGLEC11 Silent p.A564A 0.43 TCGA-BJ-A0Z9-01 1 101198098 101198098 C A VCAM1 Silent p.L550L 0.11 TCGA-BJ-A0Z9-01 1 205892719 205892719 G C SLC26A9 Missense_Mutation p.Q507E 0.37 deleterious(0) benign(0.41) TCGA-BJ-A0Z9-01 2 209302540 209302540 A C PTH2R Missense_Mutation p.L115F 0.13 tolerated(0.53) possibly_damaging(0.776) TCGA-BJ-A0Z9-01 2 21230694 21230694 C A APOB Nonsense_Mutation p.E3016* 0.28 TCGA-BJ-A0Z9-01 3 137886109 137886109 C A DBR1 Missense_Mutation p.W176C 0.08 deleterious(0) probably_damaging(1) TCGA-BJ-A0Z9-01 5 32087441 32087441 C A PDZD2 Missense_Mutation p.A1296E 0.32 deleterious(0.01) possibly_damaging(0.701) TCGA-BJ-A0Z9-01 6 106968615 106968615 A T AIM1 Missense_Mutation p.M770L 0.43 tolerated(0.5) benign(0.003) TCGA-BJ-A0Z9-01 6 147525644 147525644 G C STXBP5 5'Flank 0.31 TCGA-BJ-A0Z9-01 6 44336175 44336175 C T SPATS1 Missense_Mutation p.P212S 0.19 deleterious(0.02) possibly_damaging(0.721) TCGA-BJ-A0Z9-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-BJ-A0Z9-01 7 149463284 149463284 G A ZNF467 Nonsense_Mutation p.Q103* 0.39 TCGA-BJ-A0Z9-01 7 27856087 27856087 T A TAX1BP1 Missense_Mutation p.N628K 0.34 tolerated(0.92) benign(0.021) TCGA-BJ-A0Z9-01 8 144994984 144994984 C T PLEC Missense_Mutation p.R3139Q 0.45 benign(0.015) TCGA-BJ-A0Z9-01 8 22476665 22476665 G T CCAR2 Nonsense_Mutation p.E842* 0.25 TCGA-BJ-A0Z9-01 8 52339273 52339273 A G PXDNL Missense_Mutation p.V524A 0.33 tolerated(0.51) benign(0.044) TCGA-BJ-A0Z9-01 9 2718725 2718725 G A KCNV2 Missense_Mutation p.R329H 0.28 tolerated(0.21) benign(0.024) TCGA-BJ-A0Z9-01 X 100911988 100911988 C A ARMCX2 Missense_Mutation p.G196V 0.33 tolerated_low_confidence(0.71) benign(0) TCGA-BJ-A0Z9-01 X 70324246 70324246 G A CXorf65 Missense_Mutation p.R110C 0.15 tolerated(0.14) benign(0.048) TCGA-BJ-A0ZA-01 10 82036179 82036179 C T MAT1A Missense_Mutation p.V241I 0.05 tolerated(1) benign(0.001) TCGA-BJ-A0ZA-01 11 66638642 66638642 C T PC Missense_Mutation p.A172T 0.08 deleterious(0.04) benign(0.005) TCGA-BJ-A0ZA-01 11 94592844 94592844 T G AMOTL1 Missense_Mutation p.F700C 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-BJ-A0ZA-01 12 114793765 114793765 C T TBX5 Missense_Mutation p.A377T 0.40 deleterious(0) probably_damaging(0.998) TCGA-BJ-A0ZA-01 12 124408831 124408831 T C DNAH10 Missense_Mutation p.I3755T 0.27 benign(0.01) TCGA-BJ-A0ZA-01 16 22926609 22926609 T A HS3ST2 Missense_Mutation p.L277H 0.04 deleterious(0) probably_damaging(1) TCGA-BJ-A0ZA-01 17 41570183 41570183 G T DHX8 Missense_Mutation p.R213L 0.26 tolerated(0.16) unknown(0) TCGA-BJ-A0ZA-01 2 136026599 136026599 A G ZRANB3 Missense_Mutation p.V440A 0.04 deleterious(0) probably_damaging(0.927) TCGA-BJ-A0ZA-01 3 188584007 188584007 A G LPP Missense_Mutation p.N477S 0.42 tolerated(1) benign(0.003) TCGA-BJ-A0ZA-01 5 127637170 127637170 C T FBN2 Missense_Mutation p.V1984M 0.05 deleterious(0.02) probably_damaging(1) TCGA-BJ-A0ZA-01 6 112462655 112462655 G A LAMA4 Silent p.Y906Y 0.28 TCGA-BJ-A0ZA-01 7 104786953 104786953 A T SRPK2 Silent p.P258P 0.15 TCGA-BJ-A0ZB-01 10 50824648 50824648 T G CHAT Silent p.S129S 0.52 TCGA-BJ-A0ZB-01 11 10822345 10822345 A G EIF4G2 Missense_Mutation p.I526T 0.39 tolerated(0.08) probably_damaging(0.996) TCGA-BJ-A0ZB-01 11 1264048 1264048 G A MUC5B Missense_Mutation p.V1980I 0.41 unknown(0) TCGA-BJ-A0ZB-01 11 5221748 5221748 C G OR51V1 Missense_Mutation p.E61D 0.17 tolerated(0.86) possibly_damaging(0.524) TCGA-BJ-A0ZB-01 11 55872995 55872995 C T OR8H2 Silent p.N159N 0.35 TCGA-BJ-A0ZB-01 11 60689584 60689584 C T TMEM109 Missense_Mutation p.R227C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-BJ-A0ZB-01 11 62123836 62123836 T C ASRGL1 Missense_Mutation p.M77T 0.41 deleterious(0) probably_damaging(0.995) TCGA-BJ-A0ZB-01 12 112185090 112185101 CCCACTCAGGTT - ACAD10 Splice_Site p.X830_splice 0.35 TCGA-BJ-A0ZB-01 12 42836501 42836501 C T PPHLN1 Silent p.H361H 0.08 TCGA-BJ-A0ZB-01 12 53680377 53680377 A T ESPL1 Missense_Mutation p.Q1286L 0.05 deleterious(0.05) benign(0.104) TCGA-BJ-A0ZB-01 12 69985902 69985902 T G CCT2 Missense_Mutation p.L238R 0.40 deleterious(0) probably_damaging(1) TCGA-BJ-A0ZB-01 12 9264798 9264798 C T A2M Missense_Mutation p.R147H 0.26 deleterious(0) probably_damaging(0.993) TCGA-BJ-A0ZB-01 14 92249326 92249326 T C TC2N 3'UTR 0.12 TCGA-BJ-A0ZB-01 15 66842425 66842425 G C LCTL Silent p.L514L 0.04 TCGA-BJ-A0ZB-01 15 84582013 84582013 G A ADAMTSL3 Missense_Mutation p.A624T 0.41 tolerated(0.07) possibly_damaging(0.472) TCGA-BJ-A0ZB-01 16 30521697 30521697 C T ITGAL Missense_Mutation p.P842S 0.37 tolerated(0.32) benign(0.115) TCGA-BJ-A0ZB-01 16 31435803 31435803 G C ITGAD Missense_Mutation p.E1093Q 0.05 deleterious(0.02) possibly_damaging(0.844) TCGA-BJ-A0ZB-01 16 70367553 70367553 C T DDX19B 3'UTR 0.46 TCGA-BJ-A0ZB-01 16 77389861 77389861 C T ADAMTS18 Missense_Mutation p.R479H 0.39 deleterious(0) probably_damaging(0.994) TCGA-BJ-A0ZB-01 17 7330441 7330441 C T C17orf74 Silent p.D377D 0.24 TCGA-BJ-A0ZB-01 17 76170913 76170913 T G TK1 Missense_Mutation p.K211T 0.43 tolerated_low_confidence(0.11) benign(0.043) TCGA-BJ-A0ZB-01 19 12991901 12991901 T C DNASE2 Missense_Mutation p.Y51C 0.35 deleterious(0) probably_damaging(1) TCGA-BJ-A0ZB-01 19 16548625 16548625 C T EPS15L1 Missense_Mutation p.V89I 0.11 tolerated(0.23) benign(0.065) TCGA-BJ-A0ZB-01 19 55286820 55286820 C A KIR2DL1 Missense_Mutation p.H192N 0.05 deleterious(0.01) benign(0.387) TCGA-BJ-A0ZB-01 1 150531845 150531845 C A ADAMTSL4 Missense_Mutation p.S949Y 0.43 deleterious(0.03) probably_damaging(0.936) TCGA-BJ-A0ZB-01 1 181731728 181731728 T C CACNA1E Missense_Mutation p.W1542R 0.19 deleterious(0) possibly_damaging(0.86) TCGA-BJ-A0ZB-01 1 222717148 222717148 G A HHIPL2 Silent p.A235A 0.10 TCGA-BJ-A0ZB-01 1 36937076 36937076 C T CSF3R Missense_Mutation p.G415R 0.43 deleterious(0.02) possibly_damaging(0.907) TCGA-BJ-A0ZB-01 21 33043813 33043813 C G SCAF4 Missense_Mutation p.E1115Q 0.06 unknown(0) TCGA-BJ-A0ZB-01 22 23487734 23487734 C T RAB36 Missense_Mutation p.S61L 0.07 tolerated_low_confidence(0.22) benign(0) TCGA-BJ-A0ZB-01 2 179408637 179408637 G A TTN Silent p.Y32078Y 0.37 TCGA-BJ-A0ZB-01 3 121659901 121659901 A G SLC15A2 3'UTR 0.31 TCGA-BJ-A0ZB-01 3 133329896 133329896 C G TOPBP1 Missense_Mutation p.M1375I 0.04 tolerated(0.05) benign(0.002) TCGA-BJ-A0ZB-01 3 134089564 134089564 G A AMOTL2 Missense_Mutation p.H238Y 0.06 tolerated(1) probably_damaging(0.993) TCGA-BJ-A0ZB-01 3 49899480 49899480 C T CAMKV Silent p.K75K 0.07 TCGA-BJ-A0ZB-01 4 114263046 114263046 G A ANK2 Missense_Mutation p.E1366K 0.11 probably_damaging(0.999) TCGA-BJ-A0ZB-01 4 154533507 154533507 T C KIAA0922 Silent p.S1174S 0.47 TCGA-BJ-A0ZB-01 4 94693647 94693647 T C GRID2 Nonstop_Mutation p.*1008Rext*29 0.30 TCGA-BJ-A0ZB-01 5 137844496 137844496 C G ETF1 Missense_Mutation p.E365Q 0.05 tolerated(0.11) possibly_damaging(0.64) TCGA-BJ-A0ZB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-BJ-A0ZB-01 8 118552275 118552275 A G MED30 3'UTR 0.47 TCGA-BJ-A0ZB-01 8 131067027 131067027 C T ASAP1 Missense_Mutation p.E1114K 0.05 tolerated(0.72) benign(0.065) TCGA-BJ-A0ZB-01 8 139163752 139163752 A G FAM135B Missense_Mutation p.V989A 0.35 tolerated(0.44) benign(0.003) TCGA-BJ-A0ZB-01 8 37720621 37720621 G A RAB11FIP1 Missense_Mutation p.P1215L 0.03 deleterious(0) probably_damaging(0.999) TCGA-BJ-A0ZB-01 8 48772221 48772221 G C PRKDC Nonsense_Mutation p.S2052* 0.03 TCGA-BJ-A0ZB-01 8 92972658 92972658 C G RUNX1T1 Missense_Mutation p.D554H 0.08 deleterious(0) probably_damaging(0.999) TCGA-BJ-A0ZB-01 9 125315950 125315950 C G OR1N2 Missense_Mutation p.L168V 0.08 tolerated(0.26) probably_damaging(0.998) TCGA-BJ-A0ZB-01 X 70053437 70053438 - AACT TEX11 Frame_Shift_Ins p.A193Sfs*17 0.84 TCGA-BJ-A0ZC-01 12 132626093 132626093 C G DDX51 Missense_Mutation p.D352H 0.07 deleterious(0) probably_damaging(0.928) TCGA-BJ-A0ZC-01 17 25758368 25758368 G T TBC1D3P5 RNA 0.07 TCGA-BJ-A0ZC-01 17 77926612 77926612 G T TBC1D16 Missense_Mutation p.P262Q 0.06 deleterious(0.04) possibly_damaging(0.491) TCGA-BJ-A0ZC-01 17 8808196 8808196 T C PIK3R5 Missense_Mutation p.K104E 0.33 tolerated(0.58) benign(0.057) TCGA-BJ-A0ZC-01 19 46811989 46811989 C T HIF3A Missense_Mutation p.T173I 0.50 deleterious(0) probably_damaging(0.977) TCGA-BJ-A0ZC-01 20 13279730 13279730 G A ISM1 Missense_Mutation p.R340H 0.09 deleterious(0.05) benign(0.007) TCGA-BJ-A0ZC-01 6 1313344 1313344 G T FOXQ1 Silent p.S135S 0.09 TCGA-BJ-A0ZC-01 6 27841025 27841025 A T HIST1H4L Silent p.V88V 0.41 TCGA-BJ-A0ZC-01 8 30361916 30361916 G A RBPMS Silent p.L120L 0.08 TCGA-BJ-A0ZC-01 8 85785580 85785580 C G RALYL Missense_Mutation p.D224E 0.12 tolerated(0.08) possibly_damaging(0.664) TCGA-BJ-A0ZC-01 X 31854884 31854884 G A DMD Missense_Mutation p.S2384F 0.05 benign(0.044) TCGA-BJ-A0ZE-01 11 10327267 10327267 C T ADM Missense_Mutation p.A7V 0.43 deleterious(0.02) benign(0.443) TCGA-BJ-A0ZE-01 11 64575515 64575515 G - MEN1 Frame_Shift_Del p.L173Wfs*17 0.23 TCGA-BJ-A0ZE-01 11 82959006 82959006 C T ANKRD42 Missense_Mutation p.A378V 0.07 tolerated_low_confidence(1) benign(0) TCGA-BJ-A0ZE-01 12 110771021 110771021 A G ATP2A2 Missense_Mutation p.Y407C 0.38 deleterious(0.03) possibly_damaging(0.838) TCGA-BJ-A0ZE-01 12 25380276 25380276 T C KRAS Missense_Mutation p.Q61R 0.32 tolerated(0.06) benign(0.374) TCGA-BJ-A0ZE-01 12 49890689 49890689 A G SPATS2 Silent p.Q200Q 0.40 TCGA-BJ-A0ZE-01 16 67213988 67213988 C T KIAA0895L Missense_Mutation p.V176M 0.28 deleterious(0.02) possibly_damaging(0.824) TCGA-BJ-A0ZE-01 16 837367 837367 G A RPUSD1 Missense_Mutation p.A98V 0.33 tolerated(0.48) benign(0.073) TCGA-BJ-A0ZE-01 22 30818447 30818447 C - SEC14L2 3'UTR 0.29 TCGA-BJ-A0ZE-01 22 39475061 39475061 C A APOBEC3G Missense_Mutation p.P48T 0.05 tolerated(0.62) benign(0.098) TCGA-BJ-A0ZE-01 2 167055182 167055182 C G SCN9A Nonstop_Mutation p.*1978Yext*23 0.39 TCGA-BJ-A0ZE-01 3 69987187 69987187 A G MITF Missense_Mutation p.N190S 0.35 tolerated(0.43) possibly_damaging(0.607) TCGA-BJ-A0ZE-01 4 113189570 113189570 A C AP1AR 3'UTR 0.33 TCGA-BJ-A0ZE-01 4 170913279 170913279 G A MFAP3L Silent p.A160A 0.04 TCGA-BJ-A0ZE-01 6 30553911 30553911 G C ABCF1 Missense_Mutation p.E572Q 0.42 tolerated(0.05) benign(0.142) TCGA-BJ-A0ZE-01 8 134050904 134050904 G A SLA Silent p.S272S 0.33 TCGA-BJ-A0ZE-01 8 134050905 134050905 C T SLA Missense_Mutation p.S272N 0.33 deleterious(0) probably_damaging(0.999) TCGA-BJ-A0ZE-01 8 134050906 134050906 T G SLA Missense_Mutation p.S272R 0.28 deleterious(0) probably_damaging(0.999) TCGA-BJ-A0ZE-01 8 145731945 145731945 A G GPT Missense_Mutation p.N398S 0.38 tolerated(0.08) benign(0.015) TCGA-BJ-A0ZE-01 9 132511009 132511009 G A PTGES Missense_Mutation p.A45V 0.05 tolerated(0.1) possibly_damaging(0.76) TCGA-BJ-A0ZE-01 X 74332769 74332769 A G ABCB7 Silent p.C96C 0.04 TCGA-BJ-A0ZF-01 10 124097623 124097623 G T BTBD16 3'UTR 0.05 TCGA-BJ-A0ZF-01 10 124097624 124097624 A G BTBD16 3'UTR 0.05 TCGA-BJ-A0ZF-01 10 30736732 30736732 C T MAP3K8 Missense_Mutation p.R120C 0.39 deleterious(0) probably_damaging(0.977) TCGA-BJ-A0ZF-01 11 119053828 119053828 C T NLRX1 Missense_Mutation p.L870F 0.21 deleterious(0) probably_damaging(0.995) TCGA-BJ-A0ZF-01 11 128840216 128840216 A C ARHGAP32 Missense_Mutation p.L1617R 0.49 deleterious(0) possibly_damaging(0.748) TCGA-BJ-A0ZF-01 11 55433283 55433283 C T OR4C6 Missense_Mutation p.A214V 0.12 tolerated_low_confidence(1) benign(0.016) TCGA-BJ-A0ZF-01 11 624828 624828 G T CDHR5 Silent p.A25A 0.32 TCGA-BJ-A0ZF-01 14 35008858 35008858 G A EAPP 5'UTR 0.11 TCGA-BJ-A0ZF-01 15 42713287 42713287 A C ZNF106 Missense_Mutation p.L1807R 0.08 deleterious(0) probably_damaging(0.999) TCGA-BJ-A0ZF-01 16 31504977 31504977 C G C16orf58 Missense_Mutation p.R302T 0.14 tolerated(0.6) benign(0.002) TCGA-BJ-A0ZF-01 16 4409369 4409369 G C CORO7 Missense_Mutation p.F756L 0.22 tolerated(0.05) probably_damaging(0.997) TCGA-BJ-A0ZF-01 17 28811716 28811716 C T GOSR1 Silent p.T92T 0.14 TCGA-BJ-A0ZF-01 18 2599022 2599022 A G NDC80 Missense_Mutation p.E409G 0.32 deleterious(0) probably_damaging(0.992) TCGA-BJ-A0ZF-01 19 55853326 55853326 G A SUV420H2 Missense_Mutation p.A8T 0.05 deleterious(0.01) probably_damaging(0.981) TCGA-BJ-A0ZF-01 1 34089026 34089026 G T CSMD2 Nonsense_Mutation p.S1849* 0.38 TCGA-BJ-A0ZF-01 1 54360073 54360073 A G DIO1 Missense_Mutation p.T64A 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-BJ-A0ZF-01 22 46627935 46627935 A G PPARA Missense_Mutation p.M320V 0.06 deleterious(0.03) benign(0.057) TCGA-BJ-A0ZF-01 2 183790337 183790337 A C NCKAP1 3'UTR 0.07 TCGA-BJ-A0ZF-01 3 52388985 52388985 A G DNAH1 Missense_Mutation p.M1203V 0.33 benign(0.043) TCGA-BJ-A0ZF-01 4 11400850 11400850 G A HS3ST1 Silent p.S260S 0.04 TCGA-BJ-A0ZF-01 4 126336901 126336901 A G FAT4 Silent p.L2261L 0.08 TCGA-BJ-A0ZF-01 4 70460903 70460903 C A UGT2A1 Missense_Mutation p.W520L 0.11 deleterious(0) possibly_damaging(0.668) TCGA-BJ-A0ZF-01 5 79768579 79768579 G T ZFYVE16 Splice_Site p.X1342_splice 0.32 TCGA-BJ-A0ZF-01 6 33043841 33043841 C T HLA-DPB1 Missense_Mutation p.A8V 0.07 tolerated(0.24) benign(0.001) TCGA-BJ-A0ZF-01 7 142099660 142099660 G A TRBV7-8 Missense_Mutation p.H48Y 0.06 deleterious(0) probably_damaging(0.967) TCGA-BJ-A0ZF-01 9 131670524 131670524 A C LRRC8A Missense_Mutation p.S361R 0.42 deleterious(0) probably_damaging(0.979) TCGA-BJ-A0ZF-01 9 8465600 8465600 C T PTPRD Missense_Mutation p.A1194T 0.35 deleterious(0) probably_damaging(0.993) TCGA-BJ-A0ZF-01 X 75650162 75650162 G A MAGEE1 Silent p.Q613Q 0.06 TCGA-BJ-A0ZG-01 12 101520843 101520843 C T ANO4 Missense_Mutation p.P920S 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-BJ-A0ZG-01 12 54576295 54576295 T A SMUG1 Missense_Mutation p.Q133L 0.06 deleterious(0.01) benign(0.161) TCGA-BJ-A0ZG-01 14 22409767 22409767 G A TRAV9-2 Missense_Mutation p.R86H 0.13 tolerated(0.45) benign(0.002) TCGA-BJ-A0ZG-01 14 61442344 61442344 A C TRMT5 Silent p.V431V 0.05 TCGA-BJ-A0ZG-01 15 52486124 52486124 T C MYO5C Missense_Mutation p.K1735R 0.09 tolerated(0.11) benign(0.018) TCGA-BJ-A0ZG-01 16 53243396 53243396 T C CHD9 Silent p.P485P 0.08 TCGA-BJ-A0ZG-01 17 43363806 43363806 G A MAP3K14 RNA 0.16 TCGA-BJ-A0ZG-01 19 37309574 37309574 C T ZNF790 Missense_Mutation p.D558N 0.03 deleterious(0.01) benign(0.004) TCGA-BJ-A0ZG-01 21 31802980 31802980 C A KRTAP13-4 Silent p.S129S 0.07 TCGA-BJ-A0ZG-01 7 93540201 93540201 G C GNGT1 Missense_Mutation p.E66Q 0.05 deleterious(0.05) probably_damaging(0.999) TCGA-BJ-A0ZG-01 8 8998408 8998408 A T PPP1R3B Missense_Mutation p.L252M 0.13 tolerated(0.23) benign(0.003) TCGA-BJ-A0ZG-01 X 152991197 152991197 C T ABCD1 Missense_Mutation p.A159V 0.07 deleterious(0) possibly_damaging(0.833) TCGA-BJ-A0ZG-01 X 20156731 20156731 C T EIF1AX Missense_Mutation p.G9D 0.61 deleterious(0) unknown(0) TCGA-BJ-A0ZH-01 10 135345689 135345689 C G CYP2E1 Missense_Mutation p.I183M 0.06 deleterious(0) probably_damaging(1) TCGA-BJ-A0ZH-01 11 40137758 40137758 C T LRRC4C Missense_Mutation p.V29M 0.24 tolerated(0.28) benign(0.055) TCGA-BJ-A0ZH-01 12 109536206 109536206 C G UNG Intron 0.06 TCGA-BJ-A0ZH-01 12 15636959 15636959 T C PTPRO Missense_Mutation p.S43P 0.29 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-BJ-A0ZH-01 13 32953493 32953493 C T BRCA2 Missense_Mutation p.H2932Y 0.11 tolerated(0.15) benign(0.125) TCGA-BJ-A0ZH-01 14 24897090 24897090 G A CBLN3 Missense_Mutation p.P175S 0.03 tolerated(0.19) possibly_damaging(0.517) TCGA-BJ-A0ZH-01 14 53150513 53150513 T C ERO1L Missense_Mutation p.Y76C 0.08 deleterious(0) probably_damaging(0.968) TCGA-BJ-A0ZH-01 14 89319349 89319349 C G TTC8 Missense_Mutation p.S220C 0.31 tolerated(0.39) possibly_damaging(0.575) TCGA-BJ-A0ZH-01 15 48624444 48624444 C T DUT Intron 0.36 TCGA-BJ-A0ZH-01 16 615194 615194 C A C16orf11 Missense_Mutation p.P535T 0.06 tolerated(0.16) benign(0.326) TCGA-BJ-A0ZH-01 17 1198817 1198817 C T TUSC5 Silent p.D140D 0.05 TCGA-BJ-A0ZH-01 17 48823271 48823271 C A LUC7L3 Nonsense_Mutation p.S295* 0.26 TCGA-BJ-A0ZH-01 19 36727354 36727354 C T ZNF146 Silent p.L4L 0.05 TCGA-BJ-A0ZH-01 19 53303160 53303160 C G ZNF28 Missense_Mutation p.Q646H 0.04 tolerated(0.63) benign(0.008) TCGA-BJ-A0ZH-01 19 53304746 53304746 C G ZNF28 Missense_Mutation p.E118Q 0.03 tolerated(0.1) benign(0.022) TCGA-BJ-A0ZH-01 19 53304776 53304776 C G ZNF28 Missense_Mutation p.D108H 0.03 tolerated(0.52) benign(0.235) TCGA-BJ-A0ZH-01 19 9011326 9011326 G C MUC16 Silent p.V12969V 0.03 TCGA-BJ-A0ZH-01 1 151491515 151491515 C T CGN Missense_Mutation p.P174S 0.03 tolerated(0.12) probably_damaging(0.999) TCGA-BJ-A0ZH-01 1 159842908 159842908 G A CCDC19 Missense_Mutation p.A468V 0.33 tolerated(0.27) possibly_damaging(0.597) TCGA-BJ-A0ZH-01 1 160187260 160187260 C T DCAF8 3'UTR 0.42 TCGA-BJ-A0ZH-01 3 47162712 47162712 C G SETD2 Missense_Mutation p.E1138D 0.05 tolerated_low_confidence(0.21) benign(0.022) TCGA-BJ-A0ZH-01 5 42718766 42718766 G A GHR Missense_Mutation p.R386H 0.03 tolerated(0.05) benign(0.127) TCGA-BJ-A0ZH-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-BJ-A0ZH-01 9 107266544 107266544 A G OR13F1 Translation_Start_Site p.M1? 0.10 deleterious(0) probably_damaging(0.942) TCGA-BJ-A0ZH-01 9 35092632 35092632 C T PIGO Missense_Mutation p.E418K 0.20 tolerated(0.17) benign(0.009) TCGA-BJ-A0ZH-01 9 90401768 90401768 G A CTSL3P RNA 0.10 TCGA-BJ-A0ZH-01 X 101910801 101910801 A T GPRASP1 Missense_Mutation p.M654L 0.04 tolerated(0.09) benign(0.003) TCGA-BJ-A0ZJ-01 15 40913253 40913253 A G CASC5 Missense_Mutation p.D290G 0.06 tolerated(0.08) benign(0.153) TCGA-BJ-A0ZJ-01 16 50059581 50059581 G A CNEP1R1 Silent p.L15L 0.19 TCGA-BJ-A0ZJ-01 2 66795998 66795998 C A MEIS1 Intron 0.06 TCGA-BJ-A0ZJ-01 6 138428527 138428527 G A PERP 5'UTR 0.29 TCGA-BJ-A18Y-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.31 deleterious(0.02) benign(0.046) TCGA-BJ-A18Y-01 11 76841638 76841638 T C MYO7A 5'UTR 0.08 TCGA-BJ-A18Y-01 12 31605085 31605085 A C DENND5B Missense_Mutation p.L473R 0.04 tolerated(0.34) benign(0.24) TCGA-BJ-A18Y-01 14 81259240 81259240 G T CEP128 Missense_Mutation p.A475E 0.09 deleterious(0.01) probably_damaging(0.937) TCGA-BJ-A18Y-01 1 228033757 228033757 G A PRSS38 Missense_Mutation p.V277M 0.09 deleterious(0) probably_damaging(1) TCGA-BJ-A18Y-01 2 24245335 24245335 A G MFSD2B Silent p.T309T 0.41 TCGA-BJ-A18Y-01 3 51969488 51969488 C T RRP9 Missense_Mutation p.G281R 0.26 deleterious(0) probably_damaging(0.997) TCGA-BJ-A18Y-01 6 84618797 84618797 G A CYB5R4 Missense_Mutation p.A134T 0.30 tolerated(0.29) benign(0.005) TCGA-BJ-A18Y-01 8 133899654 133899654 C T TG Silent p.G679G 0.15 TCGA-BJ-A18Y-01 9 129870595 129870595 A T ANGPTL2 Missense_Mutation p.M139K 0.08 deleterious(0.02) benign(0.301) TCGA-BJ-A18Z-01 10 95556981 95556981 C T LGI1 Silent p.N365N 0.32 TCGA-BJ-A18Z-01 11 10518462 10518462 G A AMPD3 Missense_Mutation p.E521K 0.05 tolerated(0.19) possibly_damaging(0.524) TCGA-BJ-A18Z-01 14 20666455 20666455 C T OR11G2 Missense_Mutation p.P321S 0.25 deleterious(0) probably_damaging(1) TCGA-BJ-A18Z-01 15 66207904 66207904 G A MEGF11 Nonsense_Mutation p.Q793* 0.16 TCGA-BJ-A18Z-01 16 4164528 4164528 A C ADCY9 Missense_Mutation p.S306A 0.14 tolerated(0.1) benign(0.309) TCGA-BJ-A18Z-01 17 40967972 40967972 C A BECN1 Missense_Mutation p.D262Y 0.04 deleterious(0) probably_damaging(0.968) TCGA-BJ-A18Z-01 17 61759173 61759173 G A MAP3K3 Missense_Mutation p.E215K 0.11 deleterious(0.01) possibly_damaging(0.457) TCGA-BJ-A18Z-01 17 73501926 73501926 G A CASKIN2 Missense_Mutation p.R271W 0.07 deleterious(0) probably_damaging(0.982) TCGA-BJ-A18Z-01 19 38810844 38810844 A G KCNK6 Missense_Mutation p.N85S 0.11 deleterious(0.04) possibly_damaging(0.735) TCGA-BJ-A18Z-01 1 248512212 248512212 G A OR14C36 Missense_Mutation p.V46I 0.08 tolerated(0.21) benign(0.053) TCGA-BJ-A18Z-01 1 3328470 3328470 C T PRDM16 Missense_Mutation p.T570M 0.17 tolerated(0.07) benign(0.238) TCGA-BJ-A18Z-01 1 91733329 91733329 T C HFM1 Missense_Mutation p.T1286A 0.07 tolerated_low_confidence(1) benign(0) TCGA-BJ-A18Z-01 20 39801184 39801184 G A PLCG1 Missense_Mutation p.R1010H 0.07 deleterious(0) probably_damaging(1) TCGA-BJ-A18Z-01 2 131704157 131704157 G A ARHGEF4 Missense_Mutation p.A126T 0.05 tolerated(1) benign(0.006) TCGA-BJ-A18Z-01 2 179641835 179641835 G T TTN Intron 0.07 TCGA-BJ-A18Z-01 2 201467063 201467063 T C AOX1 Missense_Mutation p.C165R 0.28 deleterious(0) possibly_damaging(0.818) TCGA-BJ-A18Z-01 2 241656726 241656726 G A KIF1A 3'UTR 0.35 TCGA-BJ-A18Z-01 5 14489178 14489178 C T TRIO Intron 0.16 TCGA-BJ-A18Z-01 6 52616490 52616490 C T GSTA2 Missense_Mutation p.G144E 0.16 tolerated(0.06) benign(0.116) TCGA-BJ-A18Z-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.23 deleterious(0) probably_damaging(0.967) TCGA-BJ-A18Z-01 9 113563207 113563207 C G MUSK Missense_Mutation p.T850S 0.22 tolerated(0.66) benign(0.003) TCGA-BJ-A18Z-01 9 130279165 130279165 G A FAM129B Missense_Mutation p.S315F 0.21 deleterious(0) probably_damaging(0.987) TCGA-BJ-A18Z-01 9 96069101 96069101 G A WNK2 Missense_Mutation p.S2123N 0.03 unknown(0) TCGA-BJ-A18Z-01 X 53106066 53106066 C T GPR173 Missense_Mutation p.S88L 0.05 tolerated(0.11) benign(0.005) TCGA-BJ-A191-01 10 20500614 20500614 G C PLXDC2 Missense_Mutation p.D360H 0.47 deleterious(0.03) probably_damaging(0.995) TCGA-BJ-A191-01 11 8190434 8190434 C T RIC3 Missense_Mutation p.E35K 0.43 tolerated(0.17) possibly_damaging(0.51) TCGA-BJ-A191-01 12 112182761 112182761 C G ACAD10 Missense_Mutation p.R708G 0.53 deleterious(0.04) benign(0.005) TCGA-BJ-A191-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.38 TCGA-BJ-A191-01 12 57923068 57923068 G A MBD6 3'UTR 0.55 TCGA-BJ-A191-01 13 45149845 45149845 G C TSC22D1 Silent p.S122S 0.45 TCGA-BJ-A191-01 14 102873742 102873742 C T TECPR2 Missense_Mutation p.T96I 0.58 deleterious(0) probably_damaging(0.999) TCGA-BJ-A191-01 14 23075421 23075421 G A ABHD4 Missense_Mutation p.C245Y 0.54 deleterious(0) probably_damaging(0.977) TCGA-BJ-A191-01 14 59789679 59789679 C T DAAM1 Silent p.Y170Y 0.47 TCGA-BJ-A191-01 14 81744032 81744032 G A STON2 Silent p.F541F 0.42 TCGA-BJ-A191-01 14 93723588 93723588 G C BTBD7 Missense_Mutation p.R521G 0.41 deleterious(0) probably_damaging(0.999) TCGA-BJ-A191-01 16 56782202 56782202 C T NUP93 Nonsense_Mutation p.Q15* 0.28 TCGA-BJ-A191-01 17 15983374 15983374 G A NCOR1 Silent p.T1135T 0.48 TCGA-BJ-A191-01 17 32683581 32683581 C G CCL13 Silent p.L12L 0.44 TCGA-BJ-A191-01 17 45608849 45608849 C G NPEPPS Missense_Mutation p.I61M 0.44 tolerated(0.27) benign(0.285) TCGA-BJ-A191-01 18 56204584 56204584 G C ALPK2 Silent p.L945L 0.56 TCGA-BJ-A191-01 19 3282183 3282183 G C CELF5 Silent p.V270V 0.36 TCGA-BJ-A191-01 1 39494586 39494586 G TAA NDUFS5 Nonsense_Mutation p.V64* 0.46 TCGA-BJ-A191-01 20 12989815 12989815 C G SPTLC3 5'UTR 0.47 TCGA-BJ-A191-01 20 62737969 62737969 C A NPBWR2 Missense_Mutation p.R72S 0.57 deleterious(0) possibly_damaging(0.666) TCGA-BJ-A191-01 2 242794494 242794494 C T PDCD1 Missense_Mutation p.E150K 0.32 tolerated(0.22) benign(0.013) TCGA-BJ-A191-01 3 115561414 115561414 T C LSAMP Missense_Mutation p.I221V 0.39 deleterious(0) possibly_damaging(0.585) TCGA-BJ-A191-01 8 105261014 105261014 C T RIMS2 Missense_Mutation p.R1188C 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-BJ-A191-01 8 121502739 121502739 C TT MTBP Frame_Shift_Ins p.S459Ffs*14 0.10 TCGA-BJ-A191-01 8 29927254 29927254 G T TMEM66 Missense_Mutation p.P202T 0.27 tolerated(0.09) probably_damaging(0.999) TCGA-BJ-A191-01 9 116811046 116811046 C T ZNF618 Silent p.S395S 0.33 TCGA-BJ-A191-01 9 14759843 14759843 T C FREM1 Missense_Mutation p.E1754G 0.40 deleterious(0) probably_damaging(0.999) TCGA-BJ-A192-01 12 120805882 120805882 C A MSI1 Missense_Mutation p.V66F 0.53 deleterious(0.03) benign(0.408) TCGA-BJ-A192-01 12 120805884 120805884 A - MSI1 Frame_Shift_Del p.F65Sfs*41 0.44 TCGA-BJ-A192-01 17 27182067 27182067 C T ERAL1 Silent p.S5S 0.14 TCGA-BJ-A192-01 19 10600426 10600426 C T KEAP1 Missense_Mutation p.G477S 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-BJ-A192-01 19 36387021 36387021 G A NFKBID Missense_Mutation p.P156L 0.10 deleterious(0) possibly_damaging(0.834) TCGA-BJ-A192-01 19 40095966 40095966 G A LGALS13 Missense_Mutation p.V81M 0.39 tolerated(1) benign(0.044) TCGA-BJ-A192-01 3 50230803 50230803 C T GNAT1 Silent p.T85T 0.23 TCGA-BJ-A192-01 5 21842341 21842341 C T CDH12 Missense_Mutation p.G248E 0.05 deleterious(0) probably_damaging(1) TCGA-BJ-A192-01 7 150554081 150554081 C T AOC1 Nonsense_Mutation p.Q175* 0.27 TCGA-BJ-A192-01 9 28863696 28863696 A C MIR876 RNA 0.33 TCGA-BJ-A28R-01 14 99959002 99959002 C G CCNK 5'UTR 0.41 TCGA-BJ-A28R-01 16 2260148 2260148 C T BRICD5 Silent p.A105A 0.35 TCGA-BJ-A28R-01 16 81078069 81078069 C G ATMIN Missense_Mutation p.L656V 0.06 deleterious(0) possibly_damaging(0.744) TCGA-BJ-A28R-01 1 154145568 154145568 A G TPM3 Missense_Mutation p.Y163H 0.34 deleterious(0.03) benign(0.093) TCGA-BJ-A28R-01 3 183518272 183518272 C T YEATS2 Missense_Mutation p.T1115I 0.23 tolerated(0.06) benign(0.008) TCGA-BJ-A28R-01 3 38755465 38755465 C G SCN10A Missense_Mutation p.R1263P 0.08 deleterious(0) probably_damaging(0.962) TCGA-BJ-A28R-01 4 155530931 155530931 C T FGG Intron 0.22 TCGA-BJ-A28R-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-BJ-A28R-01 9 2718675 2718675 C T KCNV2 Silent p.F312F 0.07 TCGA-BJ-A28S-01 10 29773738 29773738 C - SVIL Frame_Shift_Del p.S1601Mfs*13 0.27 TCGA-BJ-A28S-01 10 95121253 95121253 T C MYOF Missense_Mutation p.D977G 0.40 deleterious(0.04) probably_damaging(0.999) TCGA-BJ-A28S-01 11 61570928 61570928 G A FADS1 Silent p.F385F 0.03 TCGA-BJ-A28S-01 11 6292023 6292023 C T CCKBR Silent p.G267G 0.06 TCGA-BJ-A28S-01 12 117922266 117922266 G A KSR2 Missense_Mutation p.T802M 0.10 deleterious(0) probably_damaging(1) TCGA-BJ-A28S-01 12 26784809 26784809 T A ITPR2 Missense_Mutation p.E975V 0.04 deleterious(0) possibly_damaging(0.905) TCGA-BJ-A28S-01 12 53670431 53670431 G T ESPL1 Missense_Mutation p.W576C 0.36 deleterious(0.03) probably_damaging(0.94) TCGA-BJ-A28S-01 13 80107511 80107511 A T NDFIP2 Missense_Mutation p.T181S 0.39 deleterious(0.03) possibly_damaging(0.639) TCGA-BJ-A28S-01 16 824957 824957 C T MSLNL Missense_Mutation p.A539T 0.16 benign(0.329) TCGA-BJ-A28S-01 17 16525630 16525630 A T ZNF624 Missense_Mutation p.I857K 0.43 deleterious(0) benign(0.05) TCGA-BJ-A28S-01 19 45028102 45028102 C T CEACAM20 RNA 0.33 TCGA-BJ-A28S-01 19 45716591 45716591 G A EXOC3L2 Silent p.L322L 0.34 TCGA-BJ-A28S-01 1 3427403 3427403 T C MEGF6 Missense_Mutation p.Y393C 0.41 deleterious(0) probably_damaging(0.999) TCGA-BJ-A28S-01 1 36381032 36381032 C T AGO1 Silent p.D639D 0.11 TCGA-BJ-A28S-01 1 89357221 89357221 G A GTF2B 5'UTR 0.38 TCGA-BJ-A28S-01 21 40668280 40668280 T C BRWD1 Missense_Mutation p.H120R 0.48 tolerated(0.22) probably_damaging(0.921) TCGA-BJ-A28S-01 3 142268455 142268455 G C ATR Missense_Mutation p.L1013V 0.33 deleterious(0.03) benign(0.05) TCGA-BJ-A28S-01 3 50004962 50004962 T - RBM6 Frame_Shift_Del p.K36Rfs*33 0.28 TCGA-BJ-A28S-01 4 74124146 74124146 G A ANKRD17 Silent p.C80C 0.06 TCGA-BJ-A28S-01 6 112479970 112479970 G T LAMA4 Missense_Mutation p.A594E 0.37 deleterious(0) possibly_damaging(0.821) TCGA-BJ-A28S-01 7 21469309 21469309 G C SP4 Missense_Mutation p.G176R 0.06 deleterious(0) benign(0.346) TCGA-BJ-A28S-01 7 66262494 66262494 G A KCTD7 Splice_Site p.X243_splice 0.04 TCGA-BJ-A28S-01 8 69434071 69434071 G A C8orf34 Missense_Mutation p.R268H 0.40 deleterious(0.01) probably_damaging(0.993) TCGA-BJ-A28S-01 9 101589093 101589093 C A GALNT12 Missense_Mutation p.R201S 0.07 deleterious(0) probably_damaging(1) TCGA-BJ-A28S-01 X 35989984 35989984 A T CXorf22 Splice_Site p.X720_splice 0.93 TCGA-BJ-A28T-01 9 99083567 99083567 T C SLC35D2 Missense_Mutation p.K324R 0.08 tolerated(0.07) benign(0.002) TCGA-BJ-A28V-01 10 14950925 14950925 G A DCLRE1C Missense_Mutation p.L521F 0.23 deleterious_low_confidence(0) probably_damaging(0.925) TCGA-BJ-A28V-01 10 50535040 50535040 C A C10orf71 3'UTR 0.33 TCGA-BJ-A28V-01 10 64565000 64565000 C G ADO Missense_Mutation p.L61V 0.57 tolerated(1) benign(0.004) TCGA-BJ-A28V-01 11 55735773 55735773 T C OR10AG1 Missense_Mutation p.N56S 0.30 deleterious(0.01) possibly_damaging(0.727) TCGA-BJ-A28V-01 11 57886441 57886441 C T OR9I1 Missense_Mutation p.R159H 0.14 tolerated(1) benign(0.179) TCGA-BJ-A28V-01 12 133266955 133266955 G - PXMP2 Frame_Shift_Del p.V77Ffs*10 0.25 TCGA-BJ-A28V-01 12 14836053 14836053 G A GUCY2C Silent p.N178N 0.49 TCGA-BJ-A28V-01 12 19501352 19501352 A G PLEKHA5 Missense_Mutation p.Y973C 0.10 deleterious(0.04) probably_damaging(0.999) TCGA-BJ-A28V-01 12 67663465 67663465 G C CAND1 5'UTR 0.39 TCGA-BJ-A28V-01 14 20249247 20249247 T C OR4M1 Missense_Mutation p.S256P 0.24 deleterious(0) possibly_damaging(0.794) TCGA-BJ-A28V-01 15 102294697 102294697 G T DNM1P47 RNA 0.14 TCGA-BJ-A28V-01 17 10558261 10558261 C A MYH3 Missense_Mutation p.V41L 0.25 tolerated(0.14) benign(0.008) TCGA-BJ-A28V-01 17 27051387 27051387 G A TLCD1 3'UTR 0.32 TCGA-BJ-A28V-01 17 39520005 39520005 G A KRT33B 3'UTR 0.29 TCGA-BJ-A28V-01 19 48389378 48389378 C T SULT2A1 Splice_Site p.X46_splice 0.15 TCGA-BJ-A28V-01 19 5844724 5844724 C A FUT3 Nonsense_Mutation p.G43* 0.40 TCGA-BJ-A28V-01 1 153984831 153984831 A T NUP210L Missense_Mutation p.S1557T 0.38 tolerated(0.29) possibly_damaging(0.895) TCGA-BJ-A28V-01 1 207934709 207934724 AGATCCATTTTCACTT - CD46 Frame_Shift_Del p.D198Lfs*30 0.35 TCGA-BJ-A28V-01 1 22084264 22084264 T C USP48 Silent p.K49K 0.45 TCGA-BJ-A28V-01 1 233152767 233152767 A T PCNXL2 Missense_Mutation p.I1580N 0.39 deleterious(0.04) benign(0.035) TCGA-BJ-A28V-01 1 65309860 65309860 C T JAK1 Missense_Mutation p.V764I 0.28 tolerated(0.31) possibly_damaging(0.721) TCGA-BJ-A28V-01 20 53267018 53267018 A T DOK5 Nonstop_Mutation p.*307Cext*2 0.08 TCGA-BJ-A28V-01 2 113012512 113012512 C T ZC3H8 Missense_Mutation p.G16D 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-BJ-A28V-01 2 21245891 21245891 T A APOB Missense_Mutation p.K876N 0.05 probably_damaging(0.911) TCGA-BJ-A28V-01 2 44079903 44079903 C T ABCG8 Missense_Mutation p.T287M 0.07 deleterious(0) possibly_damaging(0.88) TCGA-BJ-A28V-01 3 124746059 124746059 G A HEG1 Silent p.D301D 0.23 TCGA-BJ-A28V-01 4 164394293 164394293 A C TKTL2 Missense_Mutation p.H198Q 0.38 deleterious(0.02) benign(0.179) TCGA-BJ-A28V-01 5 154393803 154393803 A G KIF4B Silent p.K128K 0.32 TCGA-BJ-A28V-01 5 176721551 176721552 - A NSD1 Frame_Shift_Ins p.T2395Nfs*2 0.28 TCGA-BJ-A28V-01 6 85446689 85446689 G C TBX18 Missense_Mutation p.T513S 0.13 tolerated(0.5) benign(0.039) TCGA-BJ-A28X-01 10 11504431 11504431 C T USP6NL 3'UTR 0.20 TCGA-BJ-A28X-01 11 59377967 59377967 T C OSBP Missense_Mutation p.N153S 0.25 tolerated(0.47) possibly_damaging(0.866) TCGA-BJ-A28X-01 14 105175025 105175025 C T INF2 Silent p.A635A 0.06 TCGA-BJ-A28X-01 14 81251451 81251451 C T CEP128 Missense_Mutation p.D667N 0.20 deleterious(0) benign(0.353) TCGA-BJ-A28X-01 16 3304298 3304298 G A MEFV Missense_Mutation p.P257L 0.22 deleterious(0.03) benign(0.02) TCGA-BJ-A28X-01 2 219602314 219602314 C - TTLL4 5'UTR 0.27 TCGA-BJ-A28X-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.18 deleterious(0) probably_damaging(0.967) TCGA-BJ-A28Z-01 10 33200886 33200886 C T ITGB1 Missense_Mutation p.E546K 0.16 tolerated(1) probably_damaging(0.953) TCGA-BJ-A28Z-01 10 43651086 43651086 C T CSGALNACT2 Silent p.L163L 0.19 TCGA-BJ-A28Z-01 11 59283197 59283197 T A OR4D9 Missense_Mutation p.I271N 0.17 deleterious(0) possibly_damaging(0.857) TCGA-BJ-A28Z-01 11 64622296 64622296 G C EHD1 Missense_Mutation p.Q372E 0.21 tolerated(0.6) benign(0.017) TCGA-BJ-A28Z-01 12 108962666 108962666 A - ISCU Frame_Shift_Del p.G162Efs*39 0.11 TCGA-BJ-A28Z-01 12 56571852 56571852 G C SMARCC2 Missense_Mutation p.L446V 0.18 deleterious(0.03) possibly_damaging(0.694) TCGA-BJ-A28Z-01 12 83289743 83289743 C T TMTC2 Silent p.L267L 0.18 TCGA-BJ-A28Z-01 13 92345516 92345516 C T GPC5 Missense_Mutation p.A134V 0.20 deleterious(0) probably_damaging(1) TCGA-BJ-A28Z-01 16 10855244 10855244 G C NUBP1 Silent p.R210R 0.28 TCGA-BJ-A28Z-01 16 2358593 2358593 G A ABCA3 Silent p.L381L 0.20 TCGA-BJ-A28Z-01 17 12656261 12656261 G A MYOCD Silent p.Q552Q 0.12 TCGA-BJ-A28Z-01 19 46812559 46812559 G A HIF3A Missense_Mutation p.R238Q 0.12 tolerated(0.07) benign(0.01) TCGA-BJ-A28Z-01 1 173155920 173155920 T C TNFSF4 Missense_Mutation p.N96S 0.22 tolerated(0.6) benign(0.005) TCGA-BJ-A28Z-01 1 17735495 17735495 T C RCC2 3'UTR 0.19 TCGA-BJ-A28Z-01 1 24785395 24785395 C T NIPAL3 Missense_Mutation p.S264L 0.21 tolerated(0.09) benign(0.403) TCGA-BJ-A28Z-01 1 44456242 44456242 C G B4GALT2 3'Flank 0.19 TCGA-BJ-A28Z-01 22 45961130 45961130 T C FBLN1 Intron 0.25 TCGA-BJ-A28Z-01 2 102450904 102450904 G C MAP4K4 Missense_Mutation p.E225Q 0.15 deleterious_low_confidence(0.01) unknown(0) TCGA-BJ-A28Z-01 3 133185795 133185795 C T BFSP2 Missense_Mutation p.R339C 0.21 deleterious(0) probably_damaging(0.996) TCGA-BJ-A28Z-01 3 182988119 182988119 G A B3GNT5 Nonsense_Mutation p.W178* 0.25 TCGA-BJ-A28Z-01 3 44839336 44839336 G A KIF15 Missense_Mutation p.G329E 0.25 deleterious(0) probably_damaging(1) TCGA-BJ-A28Z-01 4 189060832 189060832 C T TRIML1 Silent p.L40L 0.22 TCGA-BJ-A28Z-01 5 94918766 94918766 G A ARSK Missense_Mutation p.R188K 0.28 tolerated(0.32) benign(0.044) TCGA-BJ-A28Z-01 6 117900212 117900212 G A GOPC Silent p.L101L 0.23 TCGA-BJ-A28Z-01 6 31741165 31741165 C T VWA7 Silent p.P257P 0.20 TCGA-BJ-A28Z-01 6 31913908 31913908 C T CFB 5'UTR 0.33 TCGA-BJ-A28Z-01 6 74161389 74161389 C T MB21D1 Silent p.L172L 0.16 TCGA-BJ-A28Z-01 7 90894813 90894813 C A FZD1 Silent p.G206G 0.21 TCGA-BJ-A28Z-01 8 38005733 38005733 C T STAR Silent p.K97K 0.20 TCGA-BJ-A290-01 10 31133848 31133848 G C ZNF438 3'UTR 0.03 TCGA-BJ-A290-01 11 124121061 124121061 C A OR8G1 Silent p.T213T 0.51 TCGA-BJ-A290-01 11 64825888 64825888 C - NAALADL1 Frame_Shift_Del p.A36Pfs*102 0.23 TCGA-BJ-A290-01 11 71293827 71293827 G A KRTAP5-11 Silent p.S19S 0.21 TCGA-BJ-A290-01 12 104100607 104100607 G T STAB2 Missense_Mutation p.C1345F 0.32 deleterious(0) probably_damaging(0.999) TCGA-BJ-A290-01 12 1943779 1943779 C T LRTM2 Silent p.Y335Y 0.50 TCGA-BJ-A290-01 14 28733813 28733813 G A BNIP3P1 RNA 0.39 TCGA-BJ-A290-01 16 20355366 20355366 G A UMOD Silent p.T437T 0.32 TCGA-BJ-A290-01 17 61759152 61759152 C T MAP3K3 Missense_Mutation p.P208S 0.41 deleterious(0) probably_damaging(1) TCGA-BJ-A290-01 17 66040434 66040434 T C KPNA2 Intron 0.41 TCGA-BJ-A290-01 18 40503596 40503596 T A RIT2 Missense_Mutation p.T123S 0.36 tolerated(0.34) probably_damaging(0.968) TCGA-BJ-A290-01 19 48908178 48908178 G A GRIN2D Missense_Mutation p.R218H 0.07 deleterious(0.03) probably_damaging(0.98) TCGA-BJ-A290-01 19 52033047 52033049 CTT - SIGLEC6 In_Frame_Del p.E314del 0.44 TCGA-BJ-A290-01 20 2594035 2594035 C T TMC2 Intron 0.48 TCGA-BJ-A290-01 20 62198473 62198473 C T HELZ2 Silent p.T746T 0.35 TCGA-BJ-A290-01 21 47552224 47552224 G A COL6A2 Missense_Mutation p.A940T 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-BJ-A290-01 2 198949565 198949565 G A PLCL1 Missense_Mutation p.V442I 0.56 tolerated(0.59) benign(0.078) TCGA-BJ-A290-01 2 238280733 238280733 C A COL6A3 Missense_Mutation p.Q1309H 0.25 probably_damaging(0.971) TCGA-BJ-A290-01 3 147128058 147128058 G A ZIC1 Silent p.S53S 0.39 TCGA-BJ-A290-01 3 183777419 183777419 C T HTR3C Missense_Mutation p.P306S 0.07 tolerated(0.1) possibly_damaging(0.887) TCGA-BJ-A290-01 3 67058637 67058637 T C KBTBD8 Missense_Mutation p.V545A 0.10 tolerated(0.52) benign(0.046) TCGA-BJ-A290-01 4 79800113 79800113 C G BMP2K Intron 0.35 TCGA-BJ-A290-01 5 132158517 132158517 G A SHROOM1 Nonsense_Mutation p.Q844* 0.50 TCGA-BJ-A290-01 5 140559327 140559327 C T PCDHB8 Missense_Mutation p.A571V 0.18 tolerated_low_confidence(0.05) benign(0.087) TCGA-BJ-A290-01 5 149677546 149677546 C T ARSI Missense_Mutation p.R314H 0.16 tolerated(0.22) probably_damaging(0.987) TCGA-BJ-A290-01 5 180622520 180622520 C T TRIM7 Silent p.S394S 0.11 TCGA-BJ-A290-01 5 35875685 35875685 G C IL7R Missense_Mutation p.R291T 0.36 deleterious(0.04) benign(0.002) TCGA-BJ-A290-01 5 94858951 94858951 C A TTC37 Missense_Mutation p.G571V 0.37 deleterious(0) probably_damaging(0.993) TCGA-BJ-A290-01 6 15513524 15513524 C T JARID2 Silent p.S1107S 0.47 TCGA-BJ-A290-01 6 26156708 26156708 G C HIST1H1E Silent p.A30A 0.39 TCGA-BJ-A290-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-BJ-A290-01 7 15430321 15430321 T C AGMO Missense_Mutation p.N266S 0.46 deleterious(0.05) benign(0.126) TCGA-BJ-A290-01 7 89856412 89856412 G T STEAP2 Missense_Mutation p.R207L 0.39 deleterious(0.02) benign(0.004) TCGA-BJ-A290-01 8 133880376 133880376 C T TG Silent p.A28A 0.24 TCGA-BJ-A290-01 9 27157925 27157925 G A TEK Missense_Mutation p.R50H 0.38 tolerated(0.25) benign(0) TCGA-BJ-A290-01 9 34659885 34659885 A C IL11RA Missense_Mutation p.T314P 0.36 deleterious(0) probably_damaging(0.97) TCGA-BJ-A2N7-01 19 12991827 12991827 C T DNASE2 Missense_Mutation p.G76S 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-BJ-A2N7-01 19 43358193 43358193 G A PSG10P RNA 0.05 TCGA-BJ-A2N7-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.38 tolerated(0.06) benign(0.006) TCGA-BJ-A2N7-01 1 227921473 227921473 G C SNAP47 5'Flank 0.47 TCGA-BJ-A2N7-01 21 39795356 39795356 C G ERG Missense_Mutation p.E129Q 0.34 deleterious(0) probably_damaging(0.994) TCGA-BJ-A2N8-01 10 102286817 102286817 G T NDUFB8 Missense_Mutation p.P76Q 0.10 deleterious(0) probably_damaging(0.981) TCGA-BJ-A2N8-01 10 43607566 43607566 C A RET Silent p.G514G 0.30 TCGA-BJ-A2N8-01 11 114315281 114315281 G A REXO2 Missense_Mutation p.V110M 0.11 deleterious(0) probably_damaging(0.99) TCGA-BJ-A2N8-01 12 1741882 1741882 G A WNT5B Missense_Mutation p.V47M 0.14 tolerated(0.12) possibly_damaging(0.657) TCGA-BJ-A2N8-01 18 63477091 63477091 G A CDH7 Missense_Mutation p.R121Q 0.11 tolerated(0.07) benign(0.172) TCGA-BJ-A2N8-01 19 47259967 47259967 C G FKRP Missense_Mutation p.F420L 0.13 deleterious(0) probably_damaging(0.97) TCGA-BJ-A2N8-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.35 tolerated(0.06) benign(0.006) TCGA-BJ-A2N8-01 1 196964999 196964999 G T CFHR5 Nonsense_Mutation p.G254* 0.10 TCGA-BJ-A2N8-01 2 167142878 167142878 C T SCN9A Missense_Mutation p.A524T 0.04 tolerated(1) benign(0.003) TCGA-BJ-A2N8-01 6 32096729 32096729 G C FKBPL Missense_Mutation p.R277G 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-BJ-A2N8-01 9 37785045 37785045 G A EXOSC3 5'UTR 0.29 TCGA-BJ-A2N8-01 X 102632596 102632596 G C NGFRAP1 Silent p.G59G 0.04 TCGA-BJ-A2N8-01 X 117815662 117815662 T C DOCK11 Silent p.N1956N 0.16 TCGA-BJ-A2N9-01 12 6204449 6204449 G T VWF Intron 0.12 TCGA-BJ-A2N9-01 17 10402290 10402290 C A MYH1 Splice_Site p.X1328_splice 0.08 TCGA-BJ-A2N9-01 1 160607074 160607074 G A SLAMF1 Missense_Mutation p.R108W 0.05 deleterious(0) possibly_damaging(0.693) TCGA-BJ-A2N9-01 1 205760569 205760569 G A SLC41A1 3'UTR 0.44 TCGA-BJ-A2N9-01 22 19960732 19960732 A G ARVCF Missense_Mutation p.I783T 0.35 deleterious(0) benign(0.04) TCGA-BJ-A2N9-01 22 30890948 30890948 G A SEC14L4 Silent p.L142L 0.24 TCGA-BJ-A2N9-01 4 167810357 167810357 C A SPOCK3 Missense_Mutation p.Q174H 0.37 tolerated(0.05) benign(0.049) TCGA-BJ-A2N9-01 6 76022780 76022780 G A FILIP1 Missense_Mutation p.A923V 0.23 deleterious(0) probably_damaging(0.998) TCGA-BJ-A2N9-01 7 100320815 100320815 A C EPO 3'UTR 0.41 TCGA-BJ-A2N9-01 8 103297922 103297922 G A UBR5 Missense_Mutation p.A1768V 0.15 tolerated(0.23) probably_damaging(0.97) TCGA-BJ-A2N9-01 X 48933589 48933589 C A WDR45 Missense_Mutation p.C152F 0.43 deleterious(0) possibly_damaging(0.656) TCGA-BJ-A2NA-01 10 103607187 103607187 C T C10orf76 3'UTR 0.12 TCGA-BJ-A2NA-01 10 119798740 119798740 C - RAB11FIP2 Frame_Shift_Del p.M336Ifs*10 0.22 TCGA-BJ-A2NA-01 11 18741432 18741432 G A IGSF22 Missense_Mutation p.P176L 0.05 deleterious(0) probably_damaging(0.975) TCGA-BJ-A2NA-01 11 5625920 5625920 G A TRIM6 Intron 0.29 TCGA-BJ-A2NA-01 11 57995529 57995529 C T OR10Q1 Silent p.E273E 0.43 TCGA-BJ-A2NA-01 12 22487068 22487068 A G ST8SIA1 Silent p.S33S 0.28 TCGA-BJ-A2NA-01 12 53084937 53084937 G C KRT77 3'UTR 0.06 TCGA-BJ-A2NA-01 12 81112653 81112653 T C MYF5 Silent p.D197D 0.36 TCGA-BJ-A2NA-01 13 37622068 37622068 G A SUPT20H Silent p.V15V 0.10 TCGA-BJ-A2NA-01 13 73539420 73539420 A C PIBF1 Missense_Mutation p.R614S 0.24 tolerated(0.46) possibly_damaging(0.461) TCGA-BJ-A2NA-01 14 21468323 21468323 C T SLC39A2 Missense_Mutation p.H99Y 0.15 tolerated(1) benign(0.003) TCGA-BJ-A2NA-01 14 24900883 24900883 C T KHNYN Missense_Mutation p.A139V 0.12 tolerated(1) benign(0) TCGA-BJ-A2NA-01 14 36988488 36988488 C G NKX2-1 Missense_Mutation p.K55N 0.13 deleterious(0) probably_damaging(0.996) TCGA-BJ-A2NA-01 14 55848817 55848817 G A ATG14 Missense_Mutation p.S247L 0.20 tolerated(0.1) possibly_damaging(0.874) TCGA-BJ-A2NA-01 15 43067809 43067809 C T TTBK2 Missense_Mutation p.D508N 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-BJ-A2NA-01 15 89659640 89659640 G A ABHD2 Missense_Mutation p.V28M 0.36 tolerated(0.08) possibly_damaging(0.519) TCGA-BJ-A2NA-01 16 3405956 3405956 G C OR2C1 Missense_Mutation p.D6H 0.17 tolerated(0.12) benign(0.001) TCGA-BJ-A2NA-01 16 74750252 74750252 C G FA2H Missense_Mutation p.Q344H 0.13 tolerated(0.06) benign(0.167) TCGA-BJ-A2NA-01 17 7139630 7139630 G C PHF23 Missense_Mutation p.P206A 0.18 tolerated_low_confidence(0.09) probably_damaging(0.956) TCGA-BJ-A2NA-01 17 7139847 7139847 G C PHF23 Silent p.L133L 0.14 TCGA-BJ-A2NA-01 17 72351455 72351455 G A KIF19 3'UTR 0.40 TCGA-BJ-A2NA-01 17 7977036 7977036 C T ALOX12B Missense_Mutation p.R565Q 0.12 tolerated(0.57) benign(0.421) TCGA-BJ-A2NA-01 19 11486194 11486194 C A SWSAP1 Silent p.I64I 0.37 TCGA-BJ-A2NA-01 19 17313022 17313022 G A MYO9B Silent p.Q1582Q 0.29 TCGA-BJ-A2NA-01 19 17756912 17756912 C T UNC13A Missense_Mutation p.A685T 0.17 deleterious(0) probably_damaging(1) TCGA-BJ-A2NA-01 19 30314717 30314717 G A CCNE1 3'UTR 0.35 TCGA-BJ-A2NA-01 19 4154971 4154971 G A CREB3L3 Missense_Mutation p.G35S 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-BJ-A2NA-01 19 49651468 49651468 C T PPFIA3 Silent p.N988N 0.21 TCGA-BJ-A2NA-01 19 56701879 56701879 C T ZSCAN5B Missense_Mutation p.D269N 0.17 tolerated(0.19) possibly_damaging(0.637) TCGA-BJ-A2NA-01 1 35915475 35915475 C T KIAA0319L Silent p.V782V 0.19 TCGA-BJ-A2NA-01 20 45947814 45947814 A G AL031666.2 Silent p.G150G 0.22 TCGA-BJ-A2NA-01 22 35947855 35947855 C T RASD2 Missense_Mutation p.P193S 0.07 deleterious(0) probably_damaging(1) TCGA-BJ-A2NA-01 22 50967746 50967746 C A TYMP Missense_Mutation p.R79L 0.33 tolerated(0.69) benign(0.096) TCGA-BJ-A2NA-01 2 169732647 169732647 T C SPC25 Missense_Mutation p.K129R 0.09 tolerated(0.09) benign(0.033) TCGA-BJ-A2NA-01 2 42991084 42991084 G C OXER1 Missense_Mutation p.S79C 0.30 deleterious(0.02) benign(0.431) TCGA-BJ-A2NA-01 2 42991137 42991137 G A OXER1 Silent p.F61F 0.29 TCGA-BJ-A2NA-01 2 42991172 42991172 G A OXER1 Missense_Mutation p.P50S 0.13 tolerated_low_confidence(0.27) benign(0.032) TCGA-BJ-A2NA-01 4 25678361 25678361 C T SLC34A2 Missense_Mutation p.T688M 0.36 deleterious_low_confidence(0) benign(0.01) TCGA-BJ-A2NA-01 6 150464574 150464574 G T PPP1R14C Silent p.R82R 0.30 TCGA-BJ-A2NA-01 6 157803239 157803239 C T ZDHHC14 Silent p.G62G 0.33 TCGA-BJ-A2NA-01 6 24409748 24409748 C T MRS2 Nonsense_Mutation p.Q121* 0.07 TCGA-BJ-A2NA-01 6 90400467 90400467 C T MDN1 Silent p.R3558R 0.12 TCGA-BJ-A2NA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-BJ-A2NA-01 8 101661544 101661544 G A SNX31 Silent p.F33F 0.10 TCGA-BJ-A2NA-01 8 145150862 145150862 G A CYC1 Missense_Mutation p.D86N 0.11 tolerated(0.05) benign(0.014) TCGA-BJ-A2NA-01 8 38205277 38205277 G A WHSC1L1 Missense_Mutation p.S138L 0.22 tolerated(0.42) benign(0.005) TCGA-BJ-A2NA-01 9 123936008 123936008 G A CNTRL Missense_Mutation p.R2247Q 0.14 benign(0.094) TCGA-BJ-A2NA-01 9 90534158 90534159 - TCTTGTCTCCCAGCGTCA SPATA31C1 Intron 0.17 TCGA-BJ-A2NA-01 X 100547854 100547854 G A TAF7L Silent p.D60D 0.70 TCGA-BJ-A2NA-01 X 109764445 109764445 G A TDGF1P3 RNA 0.27 TCGA-BJ-A2NA-01 X 152937598 152937598 G A PNCK Silent p.L169L 0.19 TCGA-BJ-A2P4-01 10 46999058 46999058 C T GPRIN2 Nonsense_Mutation p.Q60* 0.16 TCGA-BJ-A2P4-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.39 tolerated(0.07) benign(0.069) TCGA-BJ-A2P4-01 12 18891209 18891209 C A CAPZA3 Missense_Mutation p.L3I 0.05 tolerated_low_confidence(0.12) benign(0.003) TCGA-BJ-A2P4-01 14 102901026 102901026 G A TECPR2 Silent p.A624A 0.10 TCGA-BJ-A2P4-01 14 94079271 94079271 G A UNC79 Missense_Mutation p.A1118T 0.37 tolerated(0.32) probably_damaging(0.998) TCGA-BJ-A2P4-01 16 70569224 70569224 A T SF3B3 Silent p.S242S 0.40 TCGA-BJ-A2P4-01 17 47039134 47039134 G A GIP Missense_Mutation p.A102V 0.12 deleterious(0.04) benign(0.227) TCGA-BJ-A2P4-01 19 17394682 17394682 T - ANKLE1 Frame_Shift_Del p.L370Pfs*39 0.27 TCGA-BJ-A2P4-01 19 36303117 36303117 C T PRODH2 Silent p.R219R 0.32 TCGA-BJ-A2P4-01 1 65113681 65113681 G A CACHD1 Missense_Mutation p.V401I 0.10 tolerated(0.57) benign(0.002) TCGA-BJ-A2P4-01 20 47845343 47845343 C T DDX27 Silent p.P297P 0.52 TCGA-BJ-A2P4-01 20 61444704 61444704 G A OGFR Silent p.S579S 0.25 TCGA-BJ-A2P4-01 2 113332659 113332661 CCA - POLR1B In_Frame_Del p.P921del 0.30 TCGA-BJ-A2P4-01 2 136567521 136567521 C T LCT Missense_Mutation p.R799H 0.32 tolerated(0.13) probably_damaging(0.954) TCGA-BJ-A2P4-01 5 77452179 77452179 G C AP3B1 Missense_Mutation p.A459G 0.37 deleterious(0.03) benign(0.131) TCGA-BJ-A2P4-01 7 100679466 100679466 C A MUC17 Missense_Mutation p.A1590D 0.31 unknown(0) TCGA-BJ-A2P4-01 8 134062170 134062170 T C SLA Missense_Mutation p.I115M 0.39 tolerated(0.11) benign(0.028) TCGA-BJ-A2P4-01 9 108510354 108510354 C T TMEM38B Silent p.Y181Y 0.06 TCGA-BJ-A2P4-01 X 73043675 73043675 A G XIST RNA 0.04 TCGA-BJ-A3EZ-01 16 27763240 27763240 G C KIAA0556 Missense_Mutation p.E1183Q 0.50 deleterious(0.04) benign(0.113) TCGA-BJ-A3EZ-01 16 30409512 30409512 G A ZNF48 Missense_Mutation p.R314Q 0.50 tolerated(0.33) probably_damaging(0.984) TCGA-BJ-A3EZ-01 16 69200994 69200994 A G CIRH1A Missense_Mutation p.K617R 0.43 tolerated(0.34) benign(0.001) TCGA-BJ-A3EZ-01 17 11757354 11757354 C T DNAH9 Missense_Mutation p.P3181L 0.44 probably_damaging(0.993) TCGA-BJ-A3EZ-01 17 18149316 18149316 C T FLII Missense_Mutation p.D1110N 0.33 tolerated(0.22) benign(0.009) TCGA-BJ-A3EZ-01 17 41585706 41585706 G A DHX8 Splice_Site p.X774_splice 0.34 TCGA-BJ-A3EZ-01 17 8218800 8218800 C T ARHGEF15 Silent p.F443F 0.28 TCGA-BJ-A3EZ-01 19 4891083 4891083 G A ARRDC5 Missense_Mutation p.P335L 0.41 deleterious_low_confidence(0.02) benign(0.036) TCGA-BJ-A3EZ-01 1 14075951 14075951 G C PRDM2 Silent p.R160R 0.67 TCGA-BJ-A3EZ-01 1 145293460 145293460 G C NBPF10 Missense_Mutation p.E19Q 0.12 possibly_damaging(0.721) TCGA-BJ-A3EZ-01 1 179090742 179090742 C T ABL2 Silent p.V316V 0.03 TCGA-BJ-A3EZ-01 20 25656557 25656557 T - ZNF337 Frame_Shift_Del p.E456Gfs*52 0.28 TCGA-BJ-A3EZ-01 20 36031692 36031692 G C SRC Missense_Mutation p.E507D 0.14 tolerated(0.22) probably_damaging(0.962) TCGA-BJ-A3EZ-01 3 178952074 178952074 G C PIK3CA Missense_Mutation p.M1043I 0.40 tolerated(0.11) benign(0.054) TCGA-BJ-A3EZ-01 4 175897117 175897117 T C ADAM29 Silent p.H147H 0.36 TCGA-BJ-A3EZ-01 5 149602592 149602592 C T CAMK2A Missense_Mutation p.V476I 0.45 tolerated_low_confidence(0.22) benign(0.05) TCGA-BJ-A3EZ-01 5 32230250 32230250 C A MTMR12 Missense_Mutation p.L626F 0.42 deleterious(0) probably_damaging(0.962) TCGA-BJ-A3EZ-01 6 150023002 150023002 T - LATS1 Frame_Shift_Del p.F88Lfs*44 0.17 TCGA-BJ-A3EZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-BJ-A3EZ-01 7 150490266 150490266 G C TMEM176B Silent p.V170V 0.42 TCGA-BJ-A3EZ-01 7 150558122 150558122 T A AOC1 Missense_Mutation p.F694Y 0.46 deleterious(0.01) probably_damaging(1) TCGA-BJ-A3EZ-01 7 1542823 1542823 G A INTS1 Silent p.H21H 0.38 TCGA-BJ-A3EZ-01 7 73731926 73731926 C G CLIP2 Missense_Mutation p.S17C 0.45 deleterious(0.03) probably_damaging(0.962) TCGA-BJ-A3EZ-01 8 38264955 38264955 G T LETM2 Nonsense_Mutation p.G416* 0.37 TCGA-BJ-A3EZ-01 Y 14924964 14924964 A C USP9Y Missense_Mutation p.Y1529S 0.79 deleterious(0) possibly_damaging(0.811) TCGA-BJ-A3F0-01 11 46407206 46407206 G A CHRM4 Missense_Mutation p.A301V 0.06 tolerated(0.75) benign(0.002) TCGA-BJ-A3F0-01 12 107415951 107415951 C T CRY1 Missense_Mutation p.E60K 0.06 tolerated(0.13) possibly_damaging(0.576) TCGA-BJ-A3F0-01 14 93172867 93172867 C A LGMN Silent p.L384L 0.05 TCGA-BJ-A3F0-01 16 67173971 67173971 T G C16orf70 Missense_Mutation p.L249R 0.05 deleterious(0.02) probably_damaging(0.924) TCGA-BJ-A3F0-01 16 67214355 67214355 G A KIAA0895L Silent p.V53V 0.35 TCGA-BJ-A3F0-01 17 7251632 7251632 A G ACAP1 Missense_Mutation p.K506E 0.23 deleterious(0) probably_damaging(0.999) TCGA-BJ-A3F0-01 19 52219536 52219536 C T HAS1 Missense_Mutation p.R345H 0.08 deleterious(0) probably_damaging(0.957) TCGA-BJ-A3F0-01 1 32207698 32207698 C T BAI2 Missense_Mutation p.G458D 0.09 deleterious(0) probably_damaging(0.998) TCGA-BJ-A3F0-01 20 57484597 57484597 G T GNAS Missense_Mutation p.Q870H 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-BJ-A3F0-01 2 101564729 101564729 C T NPAS2 Silent p.F132F 0.40 TCGA-BJ-A3F0-01 2 74328100 74328100 C A TET3 Silent p.S1260S 0.20 TCGA-BJ-A3F0-01 3 156421217 156421217 C T TIPARP Missense_Mutation p.L418F 0.12 tolerated(0.05) possibly_damaging(0.859) TCGA-BJ-A3F0-01 3 47890987 47890987 G T DHX30 Missense_Mutation p.S1045I 0.06 deleterious(0.02) benign(0.113) TCGA-BJ-A3F0-01 5 34826488 34826488 C T RAI14 Silent p.L904L 0.34 TCGA-BJ-A3F0-01 8 133945834 133945835 - TTCACCG TG Frame_Shift_Ins p.S1619Hfs*12 0.14 TCGA-BJ-A3F0-01 8 25226092 25226092 C T DOCK5 Missense_Mutation p.H1097Y 0.24 tolerated(0.15) possibly_damaging(0.862) TCGA-BJ-A3PR-01 11 48285551 48285551 A T OR4X1 Missense_Mutation p.I47F 0.10 deleterious(0) possibly_damaging(0.623) TCGA-BJ-A3PR-01 15 62305292 62305292 G A VPS13C Silent p.A257A 0.08 TCGA-BJ-A3PR-01 17 55016500 55016500 T C COIL Missense_Mutation p.K555E 0.04 tolerated(0.22) benign(0.075) TCGA-BJ-A3PR-01 18 13100361 13100361 T G CEP192 Missense_Mutation p.L2241V 0.06 tolerated(0.33) possibly_damaging(0.487) TCGA-BJ-A3PR-01 19 41026051 41026051 G A SPTBN4 Missense_Mutation p.R1216H 0.12 tolerated(0.06) benign(0.003) TCGA-BJ-A3PR-01 1 34180219 34180219 C T CSMD2 Missense_Mutation p.R1085H 0.06 tolerated(0.06) possibly_damaging(0.646) TCGA-BJ-A3PR-01 4 111398002 111398002 C T ENPEP Silent p.L144L 0.09 TCGA-BJ-A3PR-01 6 32411670 32411670 C T HLA-DRA Missense_Mutation p.R250C 0.06 tolerated(0.23) possibly_damaging(0.843) TCGA-BJ-A3PR-01 6 53139895 53139895 G A ELOVL5 Silent p.C190C 0.05 TCGA-BJ-A3PR-01 6 53989504 53989504 A G MLIP Silent p.P151P 0.04 TCGA-BJ-A3PR-01 7 130417877 130417877 G A KLF14 3'UTR 0.11 TCGA-BJ-A3PR-01 8 41554019 41554019 C T ANK1 Missense_Mutation p.R982Q 0.05 deleterious(0) probably_damaging(0.997) TCGA-BJ-A3PT-01 10 11299727 11299727 G A CELF2 Missense_Mutation p.G144R 0.12 deleterious(0) probably_damaging(1) TCGA-BJ-A3PT-01 14 20389468 20389468 A C OR4K5 Missense_Mutation p.K235Q 0.04 deleterious(0) probably_damaging(1) TCGA-BJ-A3PT-01 15 94858758 94858758 G A MCTP2 Missense_Mutation p.V177I 0.07 tolerated(0.21) benign(0.001) TCGA-BJ-A3PT-01 16 29708392 29708392 G A QPRT Missense_Mutation p.V209M 0.08 tolerated(0.12) benign(0.092) TCGA-BJ-A3PT-01 1 109235326 109235326 C T PRPF38B Missense_Mutation p.A38V 0.07 deleterious(0.03) benign(0.022) TCGA-BJ-A3PT-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.33 tolerated(0.06) benign(0.006) TCGA-BJ-A3PT-01 1 155796629 155796629 C T GON4L Missense_Mutation p.M232I 0.06 tolerated(0.13) benign(0.001) TCGA-BJ-A3PT-01 1 231885806 231885806 C T DISC1 Missense_Mutation p.R418C 0.05 tolerated(0.18) benign(0.063) TCGA-BJ-A3PT-01 22 29091787 29091787 G C CHEK2 Nonsense_Mutation p.Y433* 0.08 TCGA-BJ-A3PT-01 2 183387037 183387037 G T PDE1A Missense_Mutation p.Q23K 0.16 tolerated_low_confidence(0.49) benign(0.03) TCGA-BJ-A3PT-01 2 231135315 231135315 G A SP140 Missense_Mutation p.A487T 0.08 deleterious(0.01) benign(0.129) TCGA-BJ-A3PT-01 3 4824425 4824425 G C ITPR1 Missense_Mutation p.Q2155H 0.09 deleterious(0) possibly_damaging(0.836) TCGA-BJ-A3PT-01 5 130825338 130825338 C A RAPGEF6 Missense_Mutation p.V581L 0.08 deleterious(0.01) possibly_damaging(0.491) TCGA-BJ-A3PT-01 5 140768722 140768722 A G PCDHGB4 Missense_Mutation p.D424G 0.03 deleterious(0) probably_damaging(0.999) TCGA-BJ-A3PT-01 5 154315560 154315560 C A GEMIN5 Missense_Mutation p.W117L 0.17 deleterious(0) probably_damaging(0.995) TCGA-BJ-A3PT-01 X 12734288 12734288 A G FRMPD4 Missense_Mutation p.I570M 0.05 tolerated(0.25) benign(0.027) TCGA-BJ-A3PT-01 X 152936612 152936612 G A PNCK Silent p.S299S 0.30 TCGA-BJ-A3PU-01 12 130184856 130184856 C A TMEM132D Missense_Mutation p.W156L 0.25 deleterious(0) probably_damaging(0.966) TCGA-BJ-A3PU-01 12 71519144 71519144 C A TSPAN8 Missense_Mutation p.M228I 0.39 tolerated(0.16) benign(0.163) TCGA-BJ-A3PU-01 16 31141896 31141896 T C KAT8 Missense_Mutation p.F376L 0.30 tolerated(0.59) benign(0.002) TCGA-BJ-A3PU-01 16 58560012 58560012 G A CNOT1 Missense_Mutation p.P2162S 0.26 deleterious(0) probably_damaging(0.997) TCGA-BJ-A3PU-01 18 21646063 21646063 G A TTC39C Missense_Mutation p.A102T 0.20 tolerated(0.87) benign(0.324) TCGA-BJ-A3PU-01 19 34263440 34263440 C T CHST8 Silent p.S249S 0.07 TCGA-BJ-A3PU-01 1 28087061 28087062 CA - FAM76A Frame_Shift_Del p.S332* 0.35 TCGA-BJ-A3PU-01 21 38137432 38137432 G C HLCS Missense_Mutation p.L521V 0.05 deleterious(0.04) benign(0.058) TCGA-BJ-A3PU-01 2 166536026 166536026 C T CSRNP3 Silent p.S507S 0.28 TCGA-BJ-A3PU-01 2 197791344 197791344 G A PGAP1 5'UTR 0.05 TCGA-BJ-A3PU-01 3 170802927 170802927 T A TNIK Missense_Mutation p.D993V 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-BJ-A3PU-01 3 47470042 47470042 T A SCAP Missense_Mutation p.Q124L 0.03 deleterious(0.01) benign(0.007) TCGA-BJ-A3PU-01 4 83857237 83857237 G C LIN54 Missense_Mutation p.P581R 0.16 deleterious(0) probably_damaging(0.999) TCGA-BJ-A3PU-01 5 140530372 140530372 C A PCDHB6 Missense_Mutation p.H178Q 0.03 deleterious(0.05) benign(0.081) TCGA-BJ-A3PU-01 5 78322341 78322341 A C DMGDH Missense_Mutation p.M699R 0.04 tolerated(0.06) possibly_damaging(0.905) TCGA-BJ-A3PU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-BJ-A3PU-01 7 30634596 30634596 T C GARS Missense_Mutation p.L20P 0.14 deleterious_low_confidence(0) unknown(0) TCGA-BJ-A3PU-01 7 5983051 5983051 A G RSPH10B Silent p.N554N 0.28 TCGA-BJ-A3PU-01 9 131355261 131355261 G A SPTAN1 Splice_Site p.X1052_splice 0.17 TCGA-BJ-A3PU-01 9 137323832 137323832 C T RXRA Silent p.L375L 0.50 TCGA-BJ-A3PU-01 X 152772037 152772037 G A BGN Missense_Mutation p.D206N 0.15 tolerated(0.46) benign(0.001) TCGA-BJ-A45D-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.22 tolerated(0.07) benign(0.069) TCGA-BJ-A45D-01 14 55518461 55518461 G A MAPK1IP1L 5'UTR 0.04 TCGA-BJ-A45D-01 17 16342533 16342533 G A TRPV2 3'Flank 0.05 TCGA-BJ-A45D-01 17 74039961 74039961 T C SRP68 Silent p.K491K 0.29 TCGA-BJ-A45D-01 19 55378013 55378013 G A KIR3DL2 Missense_Mutation p.A399T 0.04 tolerated(0.19) benign(0.012) TCGA-BJ-A45D-01 1 17263147 17263147 G C CROCC Silent p.L324L 0.10 TCGA-BJ-A45D-01 20 62730072 62730072 G A OPRL1 Missense_Mutation p.V345M 0.29 tolerated(0.18) benign(0.002) TCGA-BJ-A45D-01 22 50876653 50876655 TGA - PPP6R2 In_Frame_Del p.D607del 0.38 TCGA-BJ-A45D-01 2 38525479 38525479 G A ATL2 Missense_Mutation p.A480V 0.06 tolerated(0.64) benign(0.024) TCGA-BJ-A45D-01 4 190876274 190876274 C G FRG1 Missense_Mutation p.P134A 0.05 tolerated(0.38) benign(0.012) TCGA-BJ-A45D-01 5 179306124 179306124 C T TBC1D9B Missense_Mutation p.R497H 0.09 deleterious(0) probably_damaging(0.962) TCGA-BJ-A45D-01 5 34812041 34812041 C T RAI14 Nonsense_Mutation p.Q246* 0.09 TCGA-BJ-A45D-01 6 159421079 159421079 T C RSPH3 5'UTR 0.31 TCGA-BJ-A45D-01 7 92844905 92844905 C T HEPACAM2 Missense_Mutation p.G175D 0.06 deleterious(0) probably_damaging(0.991) TCGA-BJ-A45D-01 8 134031904 134031907 TTGT - TG Frame_Shift_Del p.L2282Ifs*61 0.15 TCGA-BJ-A45E-01 10 48390034 48390034 C T RBP3 Missense_Mutation p.V282M 0.08 deleterious(0) probably_damaging(0.995) TCGA-BJ-A45E-01 12 53586181 53586181 C T ITGB7 Silent p.Q696Q 0.13 TCGA-BJ-A45E-01 17 40673189 40673189 A G ATP6V0A1 3'UTR 0.12 TCGA-BJ-A45E-01 1 152286555 152286555 A C FLG Silent p.S269S 0.07 TCGA-BJ-A45E-01 20 44578157 44578157 T C ZNF335 Silent p.E1240E 0.15 TCGA-BJ-A45E-01 3 58728184 58728184 G A C3orf67 3'UTR 0.20 TCGA-BJ-A45F-01 15 72454662 72454662 T C GRAMD2 Missense_Mutation p.E338G 0.24 deleterious(0) probably_damaging(0.999) TCGA-BJ-A45F-01 16 71682911 71682911 T C PHLPP2 Missense_Mutation p.H1285R 0.09 tolerated(0.11) benign(0) TCGA-BJ-A45F-01 17 20013740 20013740 C A SPECC1 Missense_Mutation p.L50I 0.24 tolerated(0.1) probably_damaging(0.997) TCGA-BJ-A45F-01 19 15132292 15132292 C T CCDC105 Silent p.A334A 0.09 TCGA-BJ-A45F-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.40 tolerated(0.06) benign(0.006) TCGA-BJ-A45F-01 1 145698967 145698967 A T CD160 Missense_Mutation p.L175H 0.15 deleterious(0) probably_damaging(0.999) TCGA-BJ-A45F-01 20 23065236 23065236 G C CD93 Missense_Mutation p.L532V 0.25 tolerated(0.32) benign(0.021) TCGA-BJ-A45F-01 6 74228523 74228523 T C EEF1A1 Missense_Mutation p.S224G 0.39 deleterious_low_confidence(0.03) benign(0.001) TCGA-BJ-A45F-01 7 44801338 44801338 G A ZMIZ2 Missense_Mutation p.R477Q 0.48 deleterious(0.01) probably_damaging(0.982) TCGA-BJ-A45F-01 8 133919035 133919035 A C TG Missense_Mutation p.Q1246P 0.26 deleterious(0.03) benign(0.432) TCGA-BJ-A45F-01 X 102632410 102632410 A G NGFRAP1 5'UTR 0.42 TCGA-BJ-A45G-01 11 58920619 58920619 G A FAM111A Missense_Mutation p.R493Q 0.07 tolerated(0.13) possibly_damaging(0.849) TCGA-BJ-A45G-01 11 66189993 66189993 G A NPAS4 Silent p.Q133Q 0.06 TCGA-BJ-A45G-01 14 20248797 20248797 T A OR4M1 Missense_Mutation p.F106I 0.03 deleterious(0.03) possibly_damaging(0.573) TCGA-BJ-A45G-01 14 21270003 21270003 C T RNASE1 Silent p.V75V 0.06 TCGA-BJ-A45G-01 15 89391161 89391161 C T ACAN Missense_Mutation p.R542W 0.07 deleterious(0) unknown(0) TCGA-BJ-A45G-01 16 23428325 23428325 A G COG7 Missense_Mutation p.C419R 0.07 deleterious(0.02) possibly_damaging(0.507) TCGA-BJ-A45G-01 19 13220604 13220604 T C TRMT1 Silent p.E385E 0.25 TCGA-BJ-A45G-01 19 17435806 17435806 G A ANO8 Silent p.S1017S 0.05 TCGA-BJ-A45G-01 19 17922809 17922809 G T B3GNT3 Missense_Mutation p.D333Y 0.11 deleterious(0) probably_damaging(0.982) TCGA-BJ-A45G-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.45 tolerated(0.06) benign(0.006) TCGA-BJ-A45G-01 1 153660685 153660685 G A NPR1 Missense_Mutation p.R802H 0.10 deleterious(0.02) benign(0.081) TCGA-BJ-A45G-01 21 46117516 46117516 C T KRTAP10-12 Nonsense_Mutation p.Q134* 0.05 TCGA-BJ-A45G-01 4 57898634 57898634 T C IGFBP7 Missense_Mutation p.I263V 0.14 tolerated(0.56) possibly_damaging(0.617) TCGA-BJ-A45G-01 6 41555115 41555115 A T FOXP4 Missense_Mutation p.K246M 0.05 deleterious(0) possibly_damaging(0.886) TCGA-BJ-A45H-01 10 114903693 114903693 C T TCF7L2 Missense_Mutation p.P233S 0.27 tolerated(0.15) probably_damaging(0.999) TCGA-BJ-A45H-01 10 129906562 129906562 C T MKI67 Missense_Mutation p.G1181E 0.05 tolerated(0.46) benign(0.022) TCGA-BJ-A45H-01 14 72117175 72117175 C G SIPA1L1 Missense_Mutation p.R648G 0.10 deleterious(0) possibly_damaging(0.695) TCGA-BJ-A45H-01 17 1564035 1564035 C T PRPF8 Missense_Mutation p.R1532H 0.08 deleterious(0) probably_damaging(1) TCGA-BJ-A45H-01 18 54293600 54293600 G A TXNL1 Nonsense_Mutation p.Q63* 0.05 TCGA-BJ-A45H-01 19 11944507 11944507 C T ZNF440 3'UTR 0.13 TCGA-BJ-A45H-01 19 19606630 19606630 C - GATAD2A Frame_Shift_Del p.S232Rfs*83 0.12 TCGA-BJ-A45H-01 2 101554284 101554284 C T NPAS2 Missense_Mutation p.P115S 0.07 tolerated(1) benign(0.3) TCGA-BJ-A45H-01 6 109954219 109954219 C T AK9 Missense_Mutation p.M387I 0.27 deleterious(0) possibly_damaging(0.802) TCGA-BJ-A45H-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.20 deleterious(0) probably_damaging(0.967) TCGA-BJ-A45H-01 7 26240330 26240330 G A HNRNPA2B1 5'UTR 0.14 TCGA-BJ-A45H-01 8 61735125 61735125 C T CHD7 Silent p.L1007L 0.13 TCGA-BJ-A45I-01 10 104309838 104309838 C T SUFU Silent p.G143G 0.09 TCGA-BJ-A45I-01 11 16760369 16760369 C T C11orf58 Missense_Mutation p.S15L 0.07 tolerated(0.08) benign(0.083) TCGA-BJ-A45I-01 12 57553666 57553666 G A LRP1 Silent p.T619T 0.06 TCGA-BJ-A45I-01 14 100613029 100613029 C T DEGS2 3'UTR 0.08 TCGA-BJ-A45I-01 15 85669491 85669491 C T PDE8A Silent p.N713N 0.06 TCGA-BJ-A45I-01 19 15484823 15484823 C T AKAP8 Missense_Mutation p.A49T 0.06 tolerated(0.1) benign(0.147) TCGA-BJ-A45I-01 1 90049454 90049454 G A LRRC8B Silent p.V415V 0.07 TCGA-BJ-A45I-01 20 60511927 60511927 T C CDH4 Missense_Mutation p.Y893H 0.10 deleterious(0) probably_damaging(0.996) TCGA-BJ-A45I-01 4 114163300 114163300 A C ANK2 Silent p.R276R 0.27 TCGA-BJ-A45I-01 4 148579090 148579090 T A PRMT10 Missense_Mutation p.I395F 0.13 tolerated(0.08) benign(0.003) TCGA-BJ-A45I-01 5 179192842 179192842 G A MAML1 Silent p.E277E 0.07 TCGA-BJ-A45I-01 7 133868563 133868563 C T LRGUK Missense_Mutation p.A431V 0.05 tolerated(0.11) probably_damaging(0.986) TCGA-BJ-A45I-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.15 deleterious(0) probably_damaging(0.967) TCGA-BJ-A45I-01 8 27324815 27324815 A G CHRNA2 Missense_Mutation p.F127S 0.09 deleterious(0) probably_damaging(0.965) TCGA-BJ-A45J-01 11 3687763 3687763 G A CHRNA10 Silent p.V309V 0.09 TCGA-BJ-A45J-01 11 56344739 56344739 G A OR5M10 Silent p.F153F 0.05 TCGA-BJ-A45J-01 15 75042337 75042337 G A CYP1A2 Silent p.L86L 0.08 TCGA-BJ-A45J-01 17 10546211 10546211 C A MYH3 Nonsense_Mutation p.E505* 0.05 TCGA-BJ-A45J-01 17 42941049 42941049 C T EFTUD2 Missense_Mutation p.E463K 0.08 tolerated(0.42) benign(0.001) TCGA-BJ-A45J-01 19 10461437 10461437 G C TYK2 3'UTR 0.12 TCGA-BJ-A45J-01 19 1987243 1987243 G A BTBD2 Silent p.V397V 0.12 TCGA-BJ-A45J-01 1 158618337 158618337 C T SPTA1 Missense_Mutation p.E1226K 0.09 deleterious(0.03) benign(0.04) TCGA-BJ-A45J-01 1 230898481 230898481 C T CAPN9 Missense_Mutation p.S162F 0.12 deleterious(0) probably_damaging(1) TCGA-BJ-A45J-01 2 202899343 202899343 G A FZD7 5'UTR 0.08 TCGA-BJ-A45J-01 2 45801777 45801777 G A SRBD1 Silent p.F386F 0.06 TCGA-BJ-A45J-01 2 61438933 61438933 G A USP34 Silent p.G2938G 0.12 TCGA-BJ-A45J-01 3 188426115 188426115 G C LPP Missense_Mutation p.E392Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-BJ-A45J-01 6 150290338 150290338 G A ULBP1 Missense_Mutation p.R156K 0.07 tolerated(0.9) benign(0.028) TCGA-BJ-A45J-01 6 31630196 31630196 C T GPANK1 Silent p.V306V 0.07 TCGA-BJ-A45J-01 7 116436137 116436137 G C MET Missense_Mutation p.E1396Q 0.08 tolerated_low_confidence(0.1) benign(0.016) TCGA-BJ-A45J-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-BJ-A45J-01 9 131296128 131296128 G C GLE1 Missense_Mutation p.R515T 0.07 tolerated(0.07) benign(0.033) TCGA-BJ-A45K-01 15 79220056 79220057 - T CTSH Frame_Shift_Ins p.I233Nfs*3 0.32 TCGA-BJ-A45K-01 16 28631452 28631452 T C SULT1A1 Intron 0.57 TCGA-BJ-A45K-01 16 72153327 72153327 G A PMFBP1 Intron 0.09 TCGA-BJ-A45K-01 17 44159834 44159834 C T KANSL1 Silent p.V502V 0.13 TCGA-BJ-A45K-01 17 71380017 71380017 G A SDK2 Missense_Mutation p.T1568I 0.34 deleterious(0) possibly_damaging(0.58) TCGA-BJ-A45K-01 19 1467963 1467963 G A APC2 Missense_Mutation p.A1555T 0.14 benign(0.004) TCGA-BJ-A45K-01 19 38959963 38959963 G T RYR1 Missense_Mutation p.S1192I 0.37 probably_damaging(0.988) TCGA-BJ-A45K-01 22 50755725 50755725 C T DENND6B Silent p.Q150Q 0.43 TCGA-BJ-A45K-01 2 166866283 166866283 C T SCN1A Silent p.R1316R 0.55 TCGA-BJ-A45K-01 4 1165200 1165200 C T SPON2 Missense_Mutation p.E99K 0.21 deleterious(0) probably_damaging(0.997) TCGA-BJ-A45K-01 6 72892155 72892155 C T RIMS1 Silent p.Y327Y 0.16 TCGA-BJ-A45K-01 Y 15025700 15025700 C A DDX3Y Missense_Mutation p.P203Q 0.14 deleterious(0) probably_damaging(1) TCGA-BJ-A4O8-01 11 124747302 124747302 T C ROBO3 Intron 0.50 TCGA-BJ-A4O8-01 14 50085726 50085726 A C RPL36AL Missense_Mutation p.L33V 0.31 deleterious(0.04) benign(0.002) TCGA-BJ-A4O8-01 15 94841744 94841744 A G MCTP2 Missense_Mutation p.T84A 0.07 tolerated(0.53) benign(0.001) TCGA-BJ-A4O8-01 19 43430827 43430827 G A PSG7 Missense_Mutation p.P251S 0.04 tolerated(0.65) probably_damaging(0.995) TCGA-BJ-A4O8-01 1 3662614 3662614 G A TP73-AS1 RNA 0.08 TCGA-BJ-A4O8-01 2 241710459 241710459 C T KIF1A Missense_Mutation p.A424T 0.08 tolerated(0.31) possibly_damaging(0.543) TCGA-BJ-A4O8-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-BJ-A4O8-01 8 146076351 146076351 C T COMMD5 Missense_Mutation p.D125N 0.18 deleterious(0) probably_damaging(0.998) TCGA-BJ-A4O9-01 10 33165316 33165316 T C C10ORF68 Missense_Mutation p.F628L 0.06 deleterious_low_confidence(0) probably_damaging(0.916) TCGA-BJ-A4O9-01 11 73834059 73834059 G C C2CD3 Missense_Mutation p.L447V 0.44 deleterious(0) probably_damaging(1) TCGA-BJ-A4O9-01 12 55759422 55759422 C T OR6C75 Silent p.I176I 0.39 TCGA-BJ-A4O9-01 12 72956810 72956810 C T TRHDE Nonsense_Mutation p.Q633* 0.34 TCGA-BJ-A4O9-01 14 105242025 105242025 C G AKT1 Missense_Mutation p.E133D 0.45 tolerated(0.44) benign(0.005) TCGA-BJ-A4O9-01 14 73220067 73220067 C T DPF3 Missense_Mutation p.G69D 0.12 deleterious(0.03) probably_damaging(0.982) TCGA-BJ-A4O9-01 14 73491207 73491207 G A ZFYVE1 Nonsense_Mutation p.Q4* 0.12 TCGA-BJ-A4O9-01 15 55497815 55497815 C A RAB27A Nonsense_Mutation p.E186* 0.42 TCGA-BJ-A4O9-01 15 75182420 75182420 C T MPI Silent p.A2A 0.37 TCGA-BJ-A4O9-01 16 83948837 83948837 G C MLYCD Missense_Mutation p.E409Q 0.51 deleterious(0) probably_damaging(0.997) TCGA-BJ-A4O9-01 17 5335917 5335917 A G RPAIN 3'Flank 0.41 TCGA-BJ-A4O9-01 19 16268601 16268601 G A HSH2D 3'Flank 0.64 TCGA-BJ-A4O9-01 19 36128476 36128476 G C RBM42 3'UTR 0.12 TCGA-BJ-A4O9-01 19 6466888 6466888 C T CRB3 Intron 0.11 TCGA-BJ-A4O9-01 1 20302255 20302255 T C PLA2G2A Missense_Mutation p.Y125C 0.49 deleterious(0) probably_damaging(1) TCGA-BJ-A4O9-01 20 40033972 40033972 T C CHD6 Missense_Mutation p.N2470S 0.51 deleterious(0.01) probably_damaging(0.995) TCGA-BJ-A4O9-01 2 212251745 212251745 G C ERBB4 Missense_Mutation p.S1105C 0.40 tolerated(0.05) benign(0.198) TCGA-BJ-A4O9-01 3 122808075 122808075 G A PDIA5 Missense_Mutation p.D35N 0.40 tolerated(0.06) benign(0.12) TCGA-BJ-A4O9-01 3 57282228 57282228 A G APPL1 Missense_Mutation p.R238G 0.08 tolerated(0.4) benign(0.02) TCGA-BJ-A4O9-01 4 69528796 69528796 G A UGT2B15 Missense_Mutation p.S312L 0.50 deleterious(0) probably_damaging(0.911) TCGA-BJ-A4O9-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.49 deleterious(0) probably_damaging(0.967) TCGA-BJ-A4O9-01 7 99725100 99725100 T C MBLAC1 Missense_Mutation p.Y28H 0.23 deleterious(0) probably_damaging(0.99) TCGA-BJ-A4O9-01 9 110074019 110074019 G T RAD23B Splice_Site p.X185_splice 0.43 TCGA-BJ-A4O9-01 X 153229727 153229727 C T HCFC1 Silent p.R117R 0.05 TCGA-BJ-A4O9-01 X 24226355 24226355 G A ZFX Missense_Mutation p.E321K 0.47 tolerated(0.05) benign(0.233) TCGA-BJ-A4O9-01 X 31089693 31089693 G A FTHL17 Silent p.G126G 0.40 TCGA-CE-A13K-01 10 29754571 29754571 C A SVIL Missense_Mutation p.S2029I 0.24 deleterious(0.01) benign(0.439) TCGA-CE-A13K-01 11 77404636 77404636 G A RSF1 Silent p.C912C 0.10 TCGA-CE-A13K-01 14 22695051 22695051 G A TRAV36DV7 Missense_Mutation p.R81K 0.35 deleterious(0.04) benign(0.314) TCGA-CE-A13K-01 16 20565148 20565148 C T ACSM2B Missense_Mutation p.A231T 0.04 tolerated(0.52) possibly_damaging(0.65) TCGA-CE-A13K-01 19 12224395 12224395 T A ZNF788 3'UTR 0.55 TCGA-CE-A13K-01 19 39734513 39734513 C T IFNL3 Missense_Mutation p.R148Q 0.11 tolerated(0.5) benign(0.032) TCGA-CE-A13K-01 19 8389408 8389408 G A KANK3 Silent p.I769I 0.07 TCGA-CE-A13K-01 1 110257888 110257888 T C GSTM5 Intron 0.10 TCGA-CE-A13K-01 1 16935117 16935118 - A NBPF1 5'UTR 0.08 TCGA-CE-A13K-01 4 189068316 189068316 C T TRIML1 Silent p.H399H 0.43 TCGA-CE-A13K-01 5 140724389 140724389 G A PCDHGA3 Silent p.T263T 0.39 TCGA-CE-A13K-01 6 31595798 31595798 C G PRRC2A Missense_Mutation p.S516C 0.30 unknown(0) TCGA-CE-A13K-01 6 31847931 31847931 C A EHMT2 Missense_Mutation p.R1188L 0.06 deleterious(0.01) probably_damaging(0.945) TCGA-CE-A13K-01 6 90365677 90365677 C T MDN1 Missense_Mutation p.R5099K 0.11 unknown(0) TCGA-CE-A13K-01 7 93519448 93519448 C A TFPI2 Splice_Site p.X91_splice 0.40 TCGA-CE-A13K-01 8 97251725 97251725 C T MTERFD1 Silent p.T416T 0.39 TCGA-CE-A27D-01 10 121612707 121612707 G A MCMBP Splice_Site p.X144_splice 0.10 TCGA-CE-A27D-01 10 98742786 98742786 A G C10orf12 Missense_Mutation p.K547E 0.13 deleterious(0.02) benign(0.056) TCGA-CE-A27D-01 19 53740670 53740670 C T ZNF677 Missense_Mutation p.G437D 0.08 tolerated(0.06) benign(0.008) TCGA-CE-A27D-01 1 42050557 42050557 G C HIVEP3 5'UTR 0.07 TCGA-CE-A27D-01 4 108866315 108866315 C T CYP2U1 Missense_Mutation p.A227V 0.05 deleterious(0) possibly_damaging(0.531) TCGA-CE-A27D-01 5 34811917 34811917 G A RAI14 Silent p.V204V 0.12 TCGA-CE-A27D-01 7 121651637 121651637 C T PTPRZ1 Missense_Mutation p.T846I 0.06 deleterious_low_confidence(0) possibly_damaging(0.83) TCGA-CE-A3MD-01 11 130275958 130275958 C T ADAMTS8 Missense_Mutation p.S722N 0.40 tolerated(0.32) probably_damaging(1) TCGA-CE-A3MD-01 12 1225197 1225197 G T ERC1 Nonsense_Mutation p.E523* 0.29 TCGA-CE-A3MD-01 14 20612596 20612596 C A OR4N5 Missense_Mutation p.S234R 0.26 tolerated(0.96) benign(0.005) TCGA-CE-A3MD-01 14 74975354 74975354 A G LTBP2 Missense_Mutation p.L1202P 0.04 deleterious(0) probably_damaging(0.992) TCGA-CE-A3MD-01 15 69331268 69331268 C A NOX5 Silent p.I481I 0.32 TCGA-CE-A3MD-01 1 38478431 38478431 C A UTP11L 5'UTR 0.32 TCGA-CE-A3MD-01 3 121409980 121409980 G A GOLGB1 Missense_Mutation p.S2744F 0.04 probably_damaging(0.996) TCGA-CE-A3MD-01 5 149676882 149676882 C A ARSI Missense_Mutation p.R535S 0.39 tolerated_low_confidence(0.8) benign(0.004) TCGA-CE-A3MD-01 6 38775405 38775405 C G DNAH8 Missense_Mutation p.A840G 0.30 benign(0) TCGA-CE-A3MD-01 8 133920500 133920500 G C TG Missense_Mutation p.C1306S 0.39 deleterious(0) possibly_damaging(0.786) TCGA-CE-A3ME-01 11 14520418 14520418 T C COPB1 Silent p.E19E 0.36 TCGA-CE-A3ME-01 11 65684899 65684899 G A C11orf68 3'UTR 0.31 TCGA-CE-A3ME-01 11 67795603 67795603 C A ALDH3B1 3'UTR 0.11 TCGA-CE-A3ME-01 14 70634706 70634706 G A SLC8A3 Missense_Mutation p.A145V 0.04 deleterious(0) probably_damaging(0.996) TCGA-CE-A3ME-01 17 10318635 10318635 C T MYH8 Missense_Mutation p.V239M 0.42 deleterious(0.02) probably_damaging(0.956) TCGA-CE-A3ME-01 17 37563979 37563979 T A MED1 Nonsense_Mutation p.K1499* 0.10 TCGA-CE-A3ME-01 17 995059 995059 G T ABR Missense_Mutation p.T126N 0.08 deleterious(0) possibly_damaging(0.759) TCGA-CE-A3ME-01 19 12962967 12962967 G A MAST1 Silent p.A305A 0.04 TCGA-CE-A3ME-01 2 8871700 8871700 T C KIDINS220 Missense_Mutation p.K1489R 0.05 tolerated_low_confidence(0.09) benign(0.019) TCGA-CE-A3ME-01 3 48955844 48955844 C A ARIH2OS Missense_Mutation p.V247F 0.03 deleterious_low_confidence(0.01) possibly_damaging(0.742) TCGA-CE-A3ME-01 4 52945025 52945025 A T SPATA18 Missense_Mutation p.H382L 0.03 deleterious(0) probably_damaging(0.923) TCGA-CE-A3ME-01 4 89912157 89912157 T C FAM13A Missense_Mutation p.N191S 0.03 tolerated(0.61) possibly_damaging(0.467) TCGA-CE-A3ME-01 4 96761700 96761700 C T PDHA2 Silent p.L133L 0.11 TCGA-CE-A3ME-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-CE-A3ME-01 7 23792452 23792452 G A STK31 Splice_Site p.X378_splice 0.06 TCGA-CE-A3ME-01 X 153129444 153129444 G A L1CAM Silent p.F1117F 0.06 TCGA-CE-A481-01 12 55759273 55759273 C A OR6C75 Missense_Mutation p.P127T 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-CE-A481-01 12 56397430 56397430 C T SUOX Missense_Mutation p.T86I 0.23 deleterious(0) possibly_damaging(0.79) TCGA-CE-A481-01 17 5076261 5076262 TA - USP6 Frame_Shift_Del p.M1404Vfs*23 0.22 TCGA-CE-A481-01 1 110170707 110170707 G T AMPD2 Silent p.V415V 0.08 TCGA-CE-A481-01 1 155258386 155258386 G A HCN3 3'UTR 0.71 TCGA-CE-A481-01 22 19132143 19132143 G A DGCR14 Missense_Mutation p.P4L 0.54 deleterious_low_confidence(0) benign(0.038) TCGA-CE-A481-01 3 151107898 151107898 C T MED12L Silent p.F1826F 0.20 TCGA-CE-A481-01 3 151107899 151107899 C A MED12L Missense_Mutation p.L1827I 0.20 tolerated(0.37) benign(0.074) TCGA-CE-A481-01 3 159713372 159713372 T C IL12A 3'UTR 0.19 TCGA-CE-A481-01 3 16368297 16368297 G A RFTN1 Silent p.P411P 0.09 TCGA-CE-A481-01 3 165548145 165548145 C G BCHE Missense_Mutation p.S226T 0.33 deleterious(0) probably_damaging(1) TCGA-CE-A481-01 4 140454300 140454300 G C SETD7 Intron 0.34 TCGA-CE-A481-01 6 155569295 155569295 G A TIAM2 Missense_Mutation p.E1272K 0.11 deleterious(0) probably_damaging(0.951) TCGA-CE-A481-01 6 51640611 51640611 G T PKHD1 Missense_Mutation p.T2850K 0.31 deleterious(0) probably_damaging(0.975) TCGA-CE-A481-01 9 37740357 37740357 C T FRMPD1 Missense_Mutation p.A611V 0.23 deleterious(0) probably_damaging(0.992) TCGA-CE-A481-01 X 144909459 144909459 G T TMEM257 Missense_Mutation p.M88I 0.15 tolerated_low_confidence(0.18) benign(0.043) TCGA-CE-A482-01 10 115540477 115540477 G A PLEKHS1 3'Flank 0.18 TCGA-CE-A482-01 10 375466 375466 G T DIP2C Silent p.A1220A 0.30 TCGA-CE-A482-01 15 72144603 72144603 T C MYO9A Splice_Site p.X2116_splice 0.12 TCGA-CE-A482-01 16 31092931 31092931 C T ZNF646 Silent p.T1762T 0.21 TCGA-CE-A482-01 2 50765449 50765449 C A NRXN1 Missense_Mutation p.W735C 0.05 deleterious(0) probably_damaging(0.995) TCGA-CE-A482-01 3 12645671 12645671 G A RAF1 Silent p.V266V 0.08 TCGA-CE-A482-01 4 22517165 22517165 G A GPR125 Silent p.N81N 0.26 TCGA-CE-A482-01 7 133821786 133821786 A T LRGUK Missense_Mutation p.D103V 0.33 deleterious(0) probably_damaging(0.976) TCGA-CE-A482-01 9 140100228 140100228 C T NDOR1 5'UTR 0.05 TCGA-CE-A482-01 X 101396186 101396186 C T TCEAL6 Missense_Mutation p.G40R 0.37 tolerated(0.14) benign(0.162) TCGA-CE-A483-01 10 102743721 102743721 C T SEMA4G Silent p.L789L 0.07 TCGA-CE-A483-01 1 109795934 109795934 C T CELSR2 Missense_Mutation p.S1078F 0.08 tolerated(0.09) benign(0.035) TCGA-CE-A483-01 1 12343170 12343170 C G VPS13D Missense_Mutation p.L1671V 0.04 probably_damaging(0.938) TCGA-CE-A483-01 5 177547253 177547253 G A N4BP3 Silent p.A135A 0.08 TCGA-CE-A483-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.44 deleterious(0) probably_damaging(0.967) TCGA-CE-A483-01 7 42005532 42005532 G A GLI3 Nonsense_Mutation p.Q1047* 0.30 TCGA-CE-A483-01 9 130477927 130477927 C G PTRH1 5'UTR 0.14 TCGA-CE-A484-01 10 75557769 75557769 A G ZSWIM8 Missense_Mutation p.N1298S 0.47 deleterious(0) probably_damaging(0.991) TCGA-CE-A484-01 11 123810393 123810393 C T OR4D5 Missense_Mutation p.R24W 0.49 deleterious(0.01) possibly_damaging(0.609) TCGA-CE-A484-01 17 48750437 48750437 T C ABCC3 Missense_Mutation p.S783P 0.07 deleterious(0) possibly_damaging(0.757) TCGA-CE-A484-01 17 59989372 59989372 G A INTS2 Missense_Mutation p.R245C 0.14 tolerated(0.13) probably_damaging(0.999) TCGA-CE-A484-01 19 43576025 43576025 T C PSG2 Missense_Mutation p.N264S 0.43 tolerated(0.51) benign(0.033) TCGA-CE-A484-01 1 156108248 156108248 C T LMNA Intron 0.25 TCGA-CE-A484-01 1 156779137 156779137 A G SH2D2A Missense_Mutation p.I297T 0.07 deleterious(0) probably_damaging(0.988) TCGA-CE-A484-01 1 20975019 20975019 T C PINK1 Missense_Mutation p.I382T 0.26 deleterious(0) probably_damaging(0.991) TCGA-CE-A484-01 1 97771737 97771737 C T DPYD Silent p.K725K 0.05 TCGA-CE-A484-01 22 29121000 29121000 T C CHEK2 Missense_Mutation p.N229S 0.20 deleterious(0.05) probably_damaging(0.95) TCGA-CE-A484-01 4 159644365 159644365 C T PPID Missense_Mutation p.G26R 0.63 deleterious(0.04) benign(0.056) TCGA-CE-A484-01 4 77817854 77817854 G A SOWAHB Silent p.R383R 0.37 TCGA-CE-A484-01 5 70828156 70828156 C G BDP1 Missense_Mutation p.P1932A 0.44 tolerated(0.22) benign(0.028) TCGA-CE-A484-01 6 31323335 31323335 G A HLA-B Silent p.I218I 0.47 TCGA-CE-A484-01 6 31656510 31656510 G A ABHD16A Nonsense_Mutation p.Q414* 0.58 TCGA-CE-A484-01 X 134421632 134421632 G A ZNF75D Missense_Mutation p.H324Y 0.17 tolerated(0.33) benign(0.403) TCGA-CE-A484-01 X 26212473 26212473 C T MAGEB6 Silent p.A170A 0.13 TCGA-CE-A484-01 X 38016255 38016255 G A SRPX Missense_Mutation p.T328M 0.40 deleterious(0) benign(0.437) TCGA-CE-A484-01 X 48888961 48888961 C T TFE3 Missense_Mutation p.R412Q 0.42 deleterious(0) benign(0.238) TCGA-CE-A485-01 12 21733368 21733368 C G GYS2 Missense_Mutation p.E71Q 0.10 tolerated(0.18) probably_damaging(0.999) TCGA-CE-A485-01 2 38201247 38201247 C T RMDN2 Missense_Mutation p.R351C 0.08 deleterious(0.01) benign(0.398) TCGA-CE-A485-01 5 80369069 80369069 G A RASGRF2 Missense_Mutation p.V229M 0.23 deleterious(0) possibly_damaging(0.796) TCGA-CE-A485-01 8 106813356 106813356 A G ZFPM2 Missense_Mutation p.N349S 0.23 tolerated(0.98) benign(0.001) TCGA-DE-A0XZ-01 12 110206377 110206377 G A FAM222A Missense_Mutation p.A215T 0.07 tolerated(0.16) benign(0.003) TCGA-DE-A0XZ-01 13 32371461 32371461 C A RXFP2 Missense_Mutation p.A637E 0.13 deleterious(0) probably_damaging(0.999) TCGA-DE-A0XZ-01 14 106321234 106321234 T G IGHM Missense_Mutation p.Y252S 0.19 tolerated(0.41) benign(0.072) TCGA-DE-A0XZ-01 14 106733181 106733181 A T IGHV1-24 Missense_Mutation p.L105Q 0.03 deleterious(0) probably_damaging(0.988) TCGA-DE-A0XZ-01 16 56669762 56669762 G A MT1M 3'Flank 0.30 TCGA-DE-A0XZ-01 16 75634205 75634205 G A ADAT1 Missense_Mutation p.A473V 0.30 deleterious(0) probably_damaging(0.944) TCGA-DE-A0XZ-01 17 17924434 17924434 C T ATPAF2 Intron 0.29 TCGA-DE-A0XZ-01 17 74003919 74003919 T C EVPL Silent p.S1789S 0.05 TCGA-DE-A0XZ-01 17 79683052 79683052 G A SLC25A10 Missense_Mutation p.V131M 0.30 tolerated(0.51) benign(0.014) TCGA-DE-A0XZ-01 18 76754115 76754115 G A SALL3 Silent p.K708K 0.41 TCGA-DE-A0XZ-01 19 4523617 4523617 C G PLIN5 Missense_Mutation p.G439R 0.33 tolerated_low_confidence(0.1) benign(0.005) TCGA-DE-A0XZ-01 19 55341608 55341608 G A KIR3DL1 Missense_Mutation p.V405I 0.37 tolerated(0.63) benign(0.055) TCGA-DE-A0XZ-01 1 159683629 159683629 C T CRP Missense_Mutation p.A121T 0.18 tolerated(0.14) benign(0.003) TCGA-DE-A0XZ-01 1 167095889 167095889 G A DUSP27 Silent p.R507R 0.31 TCGA-DE-A0XZ-01 1 24201264 24201264 C A CNR2 Missense_Mutation p.A282S 0.28 deleterious(0) probably_damaging(0.917) TCGA-DE-A0XZ-01 1 33959841 33959841 G C ZSCAN20 Missense_Mutation p.E633Q 0.25 deleterious(0.01) possibly_damaging(0.448) TCGA-DE-A0XZ-01 2 189871146 189871146 C G COL3A1 Missense_Mutation p.P1057A 0.13 possibly_damaging(0.596) TCGA-DE-A0XZ-01 3 142133126 142133126 G A XRN1 Missense_Mutation p.P482S 0.33 deleterious(0) probably_damaging(0.986) TCGA-DE-A0XZ-01 4 100504662 100504662 A C MTTP Silent p.L127L 0.05 TCGA-DE-A0XZ-01 4 55964962 55964962 C T KDR Missense_Mutation p.E759K 0.07 deleterious(0.02) possibly_damaging(0.493) TCGA-DE-A0XZ-01 5 154190917 154190918 - T LARP1 Splice_Site p.X908_splice 0.30 TCGA-DE-A0XZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DE-A0XZ-01 7 77408244 77408244 T C RSBN1L Missense_Mutation p.V767A 0.11 deleterious_low_confidence(0.01) benign(0.107) TCGA-DE-A0XZ-01 9 5534909 5534909 A G PDCD1LG2 Missense_Mutation p.T74A 0.32 tolerated(0.33) benign(0.021) TCGA-DE-A0XZ-01 X 102864558 102864558 G A TCEAL3 Missense_Mutation p.R189K 0.06 tolerated(0.28) benign(0.395) TCGA-DE-A0XZ-01 X 2407561 2407561 G A ZBED1 Silent p.L400L 0.20 TCGA-DE-A0Y2-01 10 5948520 5948520 C T FBXO18 Silent p.F277F 0.04 TCGA-DE-A0Y2-01 10 64967027 64967027 G A JMJD1C Nonsense_Mutation p.Q1468* 0.43 TCGA-DE-A0Y2-01 10 95326832 95326832 A G FFAR4 Missense_Mutation p.T119A 0.43 tolerated(0.05) benign(0.141) TCGA-DE-A0Y2-01 11 124564455 124564455 G A SPA17 3'UTR 0.12 TCGA-DE-A0Y2-01 13 48985608 48985608 C T LPAR6 Missense_Mutation p.E318K 0.43 tolerated(0.27) benign(0.004) TCGA-DE-A0Y2-01 13 95248340 95248340 C T TGDS Silent p.A17A 0.43 TCGA-DE-A0Y2-01 14 50101472 50101472 C T DNAAF2 Silent p.A132A 0.25 TCGA-DE-A0Y2-01 14 77778315 77778315 C G POMT2 Missense_Mutation p.D104H 0.28 deleterious(0) probably_damaging(1) TCGA-DE-A0Y2-01 14 77778367 77778367 C T POMT2 Silent p.E86E 0.35 TCGA-DE-A0Y2-01 15 26107935 26107935 C T ATP10A Silent p.V103V 0.32 TCGA-DE-A0Y2-01 18 33606928 33606928 G A RPRD1A Nonsense_Mutation p.R242* 0.06 TCGA-DE-A0Y2-01 18 9950521 9950521 C T VAPA Nonsense_Mutation p.Q228* 0.53 TCGA-DE-A0Y2-01 19 12637690 12637690 T A ZNF564 Missense_Mutation p.H411L 0.09 deleterious(0) probably_damaging(1) TCGA-DE-A0Y2-01 1 111965622 111965622 G C OVGP1 Missense_Mutation p.L179V 0.48 deleterious(0.02) possibly_damaging(0.447) TCGA-DE-A0Y2-01 1 209933458 209933458 G C TRAF3IP3 Missense_Mutation p.R25P 0.07 deleterious(0) probably_damaging(1) TCGA-DE-A0Y2-01 1 92200373 92200373 T C TGFBR3 Silent p.E176E 0.04 TCGA-DE-A0Y2-01 2 14774447 14774447 C T FAM84A Missense_Mutation p.A115V 0.26 tolerated(0.28) possibly_damaging(0.602) TCGA-DE-A0Y2-01 2 97405604 97405604 C T LMAN2L Silent p.S58S 0.38 TCGA-DE-A0Y2-01 3 53289999 53289999 G A TKT 5'UTR 0.50 TCGA-DE-A0Y2-01 5 96498929 96498929 C T RIOK2 Missense_Mutation p.E499K 0.43 deleterious(0.03) possibly_damaging(0.566) TCGA-DE-A0Y2-01 6 128134235 128134238 ACTA - THEMIS Frame_Shift_Del p.S517Ifs*10 0.40 TCGA-DE-A0Y2-01 7 7680104 7680104 C T RPA3 5'UTR 0.07 TCGA-DE-A0Y2-01 8 145009091 145009091 G - PLEC Frame_Shift_Del p.Q415Sfs*45 0.43 TCGA-DE-A0Y2-01 8 57026479 57026479 C T MOS Silent p.A21A 0.36 TCGA-DE-A0Y2-01 9 100245294 100245294 C T TDRD7 Missense_Mutation p.S859F 0.43 tolerated(0.05) benign(0.284) TCGA-DE-A0Y2-01 9 136529067 136529067 C T SARDH Missense_Mutation p.A901T 0.05 tolerated(0.05) benign(0.097) TCGA-DE-A0Y2-01 9 74971943 74971943 G A ZFAND5 Nonsense_Mutation p.Q133* 0.40 TCGA-DE-A0Y3-01 10 96066243 96066243 C T PLCE1 Silent p.V1894V 0.13 TCGA-DE-A0Y3-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.31 TCGA-DE-A0Y3-01 12 18499700 18499700 C T PIK3C2G Missense_Mutation p.P519S 0.41 tolerated(0.48) benign(0.232) TCGA-DE-A0Y3-01 14 70924858 70924858 T A ADAM21 Silent p.V214V 0.47 TCGA-DE-A0Y3-01 14 76012817 76012817 C T BATF Silent p.L61L 0.09 TCGA-DE-A0Y3-01 17 26733056 26733056 T G SLC46A1 Missense_Mutation p.E26A 0.40 deleterious(0) benign(0.345) TCGA-DE-A0Y3-01 17 34340319 34340319 C T CCL23 Missense_Mutation p.C111Y 0.44 deleterious(0) probably_damaging(1) TCGA-DE-A0Y3-01 17 74081425 74081425 A G EXOC7 Missense_Mutation p.I612T 0.12 deleterious(0) probably_damaging(0.995) TCGA-DE-A0Y3-01 19 48254336 48254336 G A GLTSCR2 Silent p.R190R 0.42 TCGA-DE-A0Y3-01 19 54746368 54746368 C T LILRA6 Intron 0.43 TCGA-DE-A0Y3-01 19 56736373 56736373 A T ZSCAN5A Missense_Mutation p.C15S 0.07 tolerated(0.9) benign(0.105) TCGA-DE-A0Y3-01 1 155178692 155178695 CAGA - MTX1 Frame_Shift_Del p.Q33Pfs*84 0.33 TCGA-DE-A0Y3-01 5 1232375 1232375 G A SLC6A18 Missense_Mutation p.G68R 0.60 deleterious(0) probably_damaging(0.999) TCGA-DE-A0Y3-01 5 131008166 131008166 T C FNIP1 Silent p.E657E 0.03 TCGA-DE-A0Y3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-DE-A0Y3-01 7 50674044 50674044 G A GRB10 Missense_Mutation p.S421L 0.04 tolerated(0.12) benign(0.002) TCGA-DE-A0Y3-01 7 77973161 77973161 C T MAGI2 Missense_Mutation p.E448K 0.43 deleterious(0) probably_damaging(0.998) TCGA-DE-A0Y3-01 X 24483609 24483609 C T PDK3 Missense_Mutation p.P13S 0.24 tolerated(0.13) benign(0) TCGA-DE-A2OL-01 12 3127744 3127744 A T TEAD4 Missense_Mutation p.T173S 0.28 tolerated(0.92) benign(0.003) TCGA-DE-A2OL-01 18 67231729 67231729 A - DOK6 Frame_Shift_Del p.R25Dfs*18 0.27 TCGA-DE-A2OL-01 21 43838718 43838718 G T UBASH3A Missense_Mutation p.R349M 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-DE-A2OL-01 3 184090683 184090683 G C THPO Missense_Mutation p.A227G 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.725) TCGA-DE-A2OL-01 4 5468544 5468544 A C STK32B Missense_Mutation p.K342Q 0.06 tolerated(0.19) possibly_damaging(0.818) TCGA-DE-A2OL-01 4 89653166 89653166 G T FAM13A Missense_Mutation p.H944N 0.08 tolerated(0.22) probably_damaging(0.999) TCGA-DE-A2OL-01 6 33263171 33263171 G A RGL2 Missense_Mutation p.S350L 0.50 deleterious(0) probably_damaging(0.999) TCGA-DE-A2OL-01 9 120475419 120475419 T C TLR4 Missense_Mutation p.V338A 0.18 tolerated(0.78) benign(0.055) TCGA-DE-A2OL-01 9 140137041 140137041 C G TUBB4B Missense_Mutation p.A124G 0.36 deleterious_low_confidence(0) possibly_damaging(0.626) TCGA-DE-A3KN-01 11 56950058 56950058 C G LRRC55 Missense_Mutation p.L231V 0.33 deleterious(0.02) probably_damaging(0.99) TCGA-DE-A3KN-01 11 64026576 64026576 G A PLCB3 Missense_Mutation p.R462H 0.11 deleterious(0.01) possibly_damaging(0.777) TCGA-DE-A3KN-01 14 102509075 102509075 G A DYNC1H1 Missense_Mutation p.R4168Q 0.43 probably_damaging(0.96) TCGA-DE-A3KN-01 16 4558163 4558163 G C HMOX2 Missense_Mutation p.R218S 0.28 deleterious(0.03) possibly_damaging(0.472) TCGA-DE-A3KN-01 1 63113974 63113974 G A DOCK7 Missense_Mutation p.R179C 0.25 tolerated(0.07) benign(0.003) TCGA-DE-A3KN-01 3 48453906 48453906 G C PLXNB1 Missense_Mutation p.L1660V 0.26 deleterious(0) probably_damaging(0.999) TCGA-DE-A3KN-01 3 48602882 48602882 C T COL7A1 Missense_Mutation p.A2830T 0.13 benign(0.143) TCGA-DE-A3KN-01 5 145649072 145649072 G T RBM27 Missense_Mutation p.K872N 0.05 tolerated(0.32) probably_damaging(0.996) TCGA-DE-A3KN-01 5 82816691 82816691 C G VCAN Missense_Mutation p.L856V 0.32 tolerated(0.52) benign(0.01) TCGA-DE-A3KN-01 6 108230223 108230223 C T SEC63 Missense_Mutation p.R214H 0.07 deleterious(0) probably_damaging(0.961) TCGA-DE-A3KN-01 6 24358038 24358038 C T KAAG1 Silent p.S57S 0.09 TCGA-DE-A3KN-01 X 152610934 152610934 C T ZNF275 Intron 0.16 TCGA-DE-A4M8-01 10 116045953 116045953 G C VWA2 Missense_Mutation p.G418A 0.20 deleterious(0) probably_damaging(0.994) TCGA-DE-A4M8-01 11 33777500 33777500 C T FBXO3 Silent p.L165L 0.11 TCGA-DE-A4M8-01 11 55927697 55927697 C T OR8K5 Missense_Mutation p.V33I 0.20 tolerated_low_confidence(1) benign(0) TCGA-DE-A4M8-01 16 61761114 61761114 G T CDH8 Missense_Mutation p.H474N 0.10 deleterious(0.03) benign(0.446) TCGA-DE-A4M8-01 1 212115044 212115044 T C INTS7 3'UTR 0.18 TCGA-DE-A4M8-01 21 46689817 46689817 G A POFUT2 Missense_Mutation p.R317C 0.13 deleterious(0.01) possibly_damaging(0.892) TCGA-DE-A4M8-01 2 71909724 71909724 C T DYSF Missense_Mutation p.R2080W 0.16 deleterious(0) probably_damaging(0.999) TCGA-DE-A4M8-01 2 90044429 90044429 C T IGKV2D-24 Missense_Mutation p.T117I 0.16 tolerated(0.43) benign(0.033) TCGA-DE-A4M8-01 3 12183431 12183431 G A SYN2 RNA 0.15 TCGA-DE-A4M8-01 4 55946325 55946325 A G KDR Missense_Mutation p.M1285T 0.17 tolerated(0.28) benign(0.032) TCGA-DE-A4M8-01 5 1280291 1280291 C T TERT Silent p.T644T 0.05 TCGA-DE-A4M8-01 5 141329142 141329142 T C PCDH12 Silent p.A995A 0.18 TCGA-DE-A4M8-01 X 101770045 101770045 G A TMSB15A Missense_Mutation p.S16L 0.10 tolerated(0.14) possibly_damaging(0.849) TCGA-DE-A4M9-01 10 73856950 73856950 G C ASCC1 3'UTR 0.16 TCGA-DE-A4M9-01 12 52758885 52758885 A G KRT85 Missense_Mutation p.C164R 0.13 deleterious(0.04) probably_damaging(0.998) TCGA-DE-A4M9-01 17 48696019 48696019 A G CACNA1G Missense_Mutation p.T1811A 0.18 deleterious(0.02) probably_damaging(0.996) TCGA-DE-A4M9-01 17 79667546 79667546 G A HGS Silent p.A644A 0.07 TCGA-DE-A4M9-01 18 63491897 63491897 G A CDH7 Missense_Mutation p.V271I 0.13 tolerated(0.13) benign(0.047) TCGA-DE-A4M9-01 20 36952353 36952353 A T BPI Missense_Mutation p.M284L 0.06 deleterious(0.03) probably_damaging(0.993) TCGA-DE-A4M9-01 22 38251572 38251572 C T EIF3L Silent p.S98S 0.09 TCGA-DE-A4M9-01 2 54081132 54081132 C T GPR75 Silent p.G254G 0.32 TCGA-DE-A4M9-01 3 169644878 169644878 C T SAMD7 Silent p.D276D 0.45 TCGA-DE-A4M9-01 5 132535059 132535059 C T FSTL4 Missense_Mutation p.A753T 0.43 deleterious(0.02) possibly_damaging(0.754) TCGA-DE-A4M9-01 5 170148874 170148874 C A KCNIP1 Missense_Mutation p.F109L 0.06 tolerated(0.16) probably_damaging(0.999) TCGA-DE-A4M9-01 9 107331756 107331756 T A OR13C8 Missense_Mutation p.I103N 0.05 deleterious(0) benign(0.155) TCGA-DE-A4M9-01 9 91606052 91606052 C G C9orf47 Missense_Mutation p.L48V 0.36 tolerated_low_confidence(0.15) possibly_damaging(0.567) TCGA-DE-A4MA-01 11 55406191 55406191 C T OR4P4 Missense_Mutation p.R120C 0.40 deleterious(0.04) benign(0.232) TCGA-DE-A4MA-01 11 59608637 59608637 G C GIF Nonsense_Mutation p.Y224* 0.09 TCGA-DE-A4MA-01 12 123343408 123343408 C G HIP1R Missense_Mutation p.L692V 0.10 tolerated(0.78) benign(0.412) TCGA-DE-A4MA-01 19 52719042 52719042 C T PPP2R1A Missense_Mutation p.A273V 0.40 tolerated(0.1) benign(0.036) TCGA-DE-A4MA-01 19 56321703 56321703 G T NLRP11 Silent p.R91R 0.48 TCGA-DE-A4MA-01 1 109795455 109795455 C T CELSR2 Silent p.P918P 0.07 TCGA-DE-A4MA-01 1 16946393 16946393 G A RP5-1182A14.5 3'Flank 0.38 TCGA-DE-A4MA-01 1 200944674 200944674 C T KIF21B Missense_Mutation p.D1523N 0.44 deleterious(0) probably_damaging(0.985) TCGA-DE-A4MA-01 22 22930899 22930899 G A IGLV2-33 Missense_Mutation p.A32T 0.43 tolerated_low_confidence(0.49) benign(0.014) TCGA-DE-A4MA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-DE-A4MA-01 7 5632695 5632695 A G FSCN1 Missense_Mutation p.K43R 0.29 deleterious(0.02) probably_damaging(0.985) TCGA-DE-A4MB-01 10 120353932 120353932 G A PRLHR Silent p.R275R 0.15 TCGA-DE-A4MB-01 10 18242228 18242228 C T SLC39A12 Missense_Mutation p.S8L 0.08 tolerated_low_confidence(1) benign(0.005) TCGA-DE-A4MB-01 10 73827958 73827958 G A SPOCK2 Silent p.A192A 0.53 TCGA-DE-A4MB-01 10 95721200 95721200 G A PIPSL RNA 0.07 TCGA-DE-A4MB-01 13 21006266 21006266 A G CRYL1 Missense_Mutation p.I203T 0.39 deleterious_low_confidence(0) possibly_damaging(0.716) TCGA-DE-A4MB-01 14 105246445 105246445 A C AKT1 Missense_Mutation p.L52R 0.30 deleterious(0) probably_damaging(1) TCGA-DE-A4MB-01 15 51250835 51250835 G T AP4E1 Silent p.A565A 0.27 TCGA-DE-A4MB-01 15 72494909 72494909 A T PKM Intron 0.17 TCGA-DE-A4MB-01 16 87885381 87885381 G T SLC7A5 Missense_Mutation p.L205I 0.10 tolerated(0.15) probably_damaging(0.945) TCGA-DE-A4MB-01 17 34235622 34235622 C T AC015849.16 RNA 0.06 TCGA-DE-A4MB-01 18 43484051 43484051 C T EPG5 Missense_Mutation p.R1454H 0.31 tolerated(0.07) probably_damaging(0.984) TCGA-DE-A4MB-01 19 10114761 10114761 G A COL5A3 Missense_Mutation p.R219W 0.28 unknown(0) TCGA-DE-A4MB-01 19 11304503 11304503 C T KANK2 Missense_Mutation p.E85K 0.06 deleterious(0) probably_damaging(0.996) TCGA-DE-A4MB-01 19 23405665 23405665 C T ZNF724P Missense_Mutation p.R461Q 0.35 tolerated(0.81) benign(0.001) TCGA-DE-A4MB-01 1 1560433 1560433 A T MIB2 Missense_Mutation p.S312C 0.40 deleterious(0) probably_damaging(0.967) TCGA-DE-A4MB-01 1 171083277 171083277 G T FMO3 Nonsense_Mutation p.E320* 0.37 TCGA-DE-A4MB-01 1 222803243 222803243 C T MIA3 Missense_Mutation p.S894F 0.05 tolerated(0.31) possibly_damaging(0.73) TCGA-DE-A4MB-01 1 33099302 33099302 G T ZBTB8OS Missense_Mutation p.H103N 0.10 tolerated(0.36) benign(0.034) TCGA-DE-A4MB-01 1 34076666 34076666 C G CSMD2 Silent p.R2066R 0.20 TCGA-DE-A4MB-01 1 43395605 43395605 G A SLC2A1 Silent p.F206F 0.05 TCGA-DE-A4MB-01 20 35651085 35651085 G A RBL1 Missense_Mutation p.L843F 0.08 deleterious(0) probably_damaging(1) TCGA-DE-A4MB-01 20 58547113 58547113 G T CDH26 Missense_Mutation p.D110Y 0.18 deleterious(0) probably_damaging(0.992) TCGA-DE-A4MB-01 3 12198945 12198945 C T TIMP4 Silent p.P59P 0.09 TCGA-DE-A4MB-01 3 167728142 167728142 C A GOLIM4 Missense_Mutation p.R669L 0.06 deleterious_low_confidence(0.02) benign(0.313) TCGA-DE-A4MB-01 3 170587962 170587962 G C RPL22L1 5'UTR 0.36 TCGA-DE-A4MB-01 4 41984086 41984086 G A DCAF4L1 Missense_Mutation p.E93K 0.26 tolerated(1) benign(0.008) TCGA-DE-A4MB-01 4 77247129 77247129 T C CCDC158 Missense_Mutation p.N1013S 0.34 tolerated(0.9) benign(0) TCGA-DE-A4MB-01 6 167587456 167587456 G T TCP10L2 Silent p.L120L 0.12 TCGA-DE-A4MB-01 6 52945836 52945836 C G FBXO9 Missense_Mutation p.Q170E 0.14 tolerated(0.37) benign(0.017) TCGA-DE-A4MB-01 7 123152231 123152231 C T IQUB Missense_Mutation p.S55N 0.34 tolerated_low_confidence(0.31) benign(0.001) TCGA-DE-A4MB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DE-A4MB-01 8 145624726 145624726 C T CPSF1 Silent p.E444E 0.29 TCGA-DE-A4MB-01 X 137717796 137717796 G A FGF13 Silent p.C151C 0.26 TCGA-DE-A4MB-01 X 27766084 27766084 G T DCAF8L2 Missense_Mutation p.V358L 0.15 tolerated(0.28) benign(0.185) TCGA-DE-A4MC-01 11 108236054 108236054 A G ATM Missense_Mutation p.D2997G 0.38 deleterious(0.05) benign(0.002) TCGA-DE-A4MC-01 12 64174850 64174850 A C TMEM5 Missense_Mutation p.K74T 0.46 tolerated(0.1) possibly_damaging(0.678) TCGA-DE-A4MC-01 14 24035923 24035923 A C AP1G2 Intron 0.45 TCGA-DE-A4MC-01 14 94505479 94505479 C T OTUB2 Intron 0.49 TCGA-DE-A4MC-01 16 75563592 75563592 G A CHST5 Missense_Mutation p.R231C 0.37 deleterious(0) probably_damaging(0.987) TCGA-DE-A4MC-01 17 39034494 39034494 G A KRT20 Missense_Mutation p.R348C 0.38 tolerated(0.13) benign(0.126) TCGA-DE-A4MC-01 18 20577633 20577633 A G RBBP8 Silent p.T693T 0.46 TCGA-DE-A4MC-01 1 161043038 161043038 C A PVRL4 Missense_Mutation p.D429Y 0.15 deleterious(0.03) possibly_damaging(0.898) TCGA-DE-A4MC-01 20 3766657 3766657 G A CENPB Silent p.A158A 0.44 TCGA-DE-A4MC-01 22 24580155 24580155 C T SUSD2 Missense_Mutation p.T164M 0.32 deleterious(0.04) benign(0.21) TCGA-DE-A4MC-01 2 179610827 179610827 C T TTN Intron 0.31 TCGA-DE-A4MC-01 3 52404789 52404789 C T DNAH1 Missense_Mutation p.A2158V 0.15 benign(0.004) TCGA-DE-A4MC-01 5 86645086 86645086 T C RASA1 Silent p.Y386Y 0.05 TCGA-DE-A4MC-01 7 111395599 111395599 C T DOCK4 Missense_Mutation p.R1454H 0.30 deleterious(0) probably_damaging(0.99) TCGA-DE-A4MC-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DE-A4MC-01 7 43483867 43483867 G A HECW1 Missense_Mutation p.D366N 0.32 tolerated_low_confidence(0.28) benign(0.001) TCGA-DE-A4MC-01 9 108097922 108097922 G T SLC44A1 Silent p.A116A 0.34 TCGA-DE-A4MC-01 9 2039767 2039767 G A SMARCA2 Silent p.Q219Q 0.12 TCGA-DE-A4MC-01 X 128914084 128914084 G A SASH3 Missense_Mutation p.R4H 0.50 deleterious(0) possibly_damaging(0.877) TCGA-DE-A4MC-01 X 21874958 21874958 C T YY2 Missense_Mutation p.T119I 0.45 tolerated(0.06) benign(0.271) TCGA-DE-A4MD-01 10 104136068 104136068 A T GBF1 Missense_Mutation p.N1308I 0.56 deleterious(0.03) benign(0.017) TCGA-DE-A4MD-01 11 102736506 102736506 C T MMP12 Splice_Site 1.00 TCGA-DE-A4MD-01 11 49175929 49175929 C T FOLH1 Missense_Mutation p.R580Q 0.41 tolerated(0.3) probably_damaging(1) TCGA-DE-A4MD-01 11 64575521 64575521 G A MEN1 Nonsense_Mutation p.Q171* 1.00 TCGA-DE-A4MD-01 12 11149536 11149536 C A TAS2R20 3'UTR 0.48 TCGA-DE-A4MD-01 12 124179517 124179517 C T TCTN2 Nonsense_Mutation p.Q410* 0.52 TCGA-DE-A4MD-01 12 40745381 40745381 C T LRRK2 Missense_Mutation p.T2141M 0.38 tolerated(1) benign(0.001) TCGA-DE-A4MD-01 12 49392347 49392347 C T DDN Silent p.E104E 0.36 TCGA-DE-A4MD-01 12 7362742 7362742 G T PEX5 Missense_Mutation p.G630C 0.50 deleterious(0) probably_damaging(1) TCGA-DE-A4MD-01 13 32802773 32802773 T C FRY Missense_Mutation p.I1796T 0.45 deleterious(0) possibly_damaging(0.881) TCGA-DE-A4MD-01 14 102718108 102718108 T C MOK Silent p.E132E 0.33 TCGA-DE-A4MD-01 14 24886268 24886268 C T NYNRIN Silent p.P1771P 0.54 TCGA-DE-A4MD-01 17 40447744 40447744 G T STAT5A Missense_Mutation p.E161D 0.45 tolerated(0.61) benign(0.001) TCGA-DE-A4MD-01 17 40447745 40447745 C T STAT5A Silent p.L162L 0.45 TCGA-DE-A4MD-01 17 78444515 78444517 TCA - NPTX1 3'UTR 0.58 TCGA-DE-A4MD-01 19 36216141 36216141 C T KMT2B Silent p.N1183N 0.45 TCGA-DE-A4MD-01 19 46387368 46387368 G A IRF2BP1 Silent p.V555V 0.39 TCGA-DE-A4MD-01 1 160054053 160054053 T A KCNJ9 Missense_Mutation p.I78N 0.71 deleterious(0) possibly_damaging(0.905) TCGA-DE-A4MD-01 1 233296140 233296140 C T PCNXL2 Missense_Mutation p.V1136M 0.38 deleterious(0) probably_damaging(0.945) TCGA-DE-A4MD-01 1 237753135 237753135 G A RYR2 Missense_Mutation p.R1214K 0.34 benign(0.065) TCGA-DE-A4MD-01 21 37833680 37833680 G A CLDN14 Missense_Mutation p.T105M 0.45 deleterious(0) probably_damaging(1) TCGA-DE-A4MD-01 2 44145498 44145498 T C LRPPRC Missense_Mutation p.N979S 0.45 deleterious(0.05) benign(0.146) TCGA-DE-A4MD-01 3 40529513 40529513 G A ZNF619 Silent p.L544L 0.44 TCGA-DE-A4MD-01 3 49689757 49689757 C G BSN Missense_Mutation p.T923S 0.40 unknown(0) TCGA-DE-A4MD-01 4 104640456 104640456 T C TACR3 Missense_Mutation p.N126S 0.37 deleterious(0) probably_damaging(0.999) TCGA-DE-A4MD-01 4 120169968 120169968 T C USP53 Silent p.A101A 0.50 TCGA-DE-A4MD-01 5 140589694 140589695 AG - PCDHB12 Frame_Shift_Del p.R407Tfs*39 0.08 TCGA-DE-A4MD-01 6 29342445 29342445 C T OR12D3 Missense_Mutation p.G207E 0.47 deleterious(0.02) possibly_damaging(0.885) TCGA-DE-A4MD-01 6 656774 656774 C T HUS1B Silent p.E57E 0.64 TCGA-DE-A4MD-01 7 117431414 117431414 T G CTTNBP2 Silent p.P612P 0.53 TCGA-DE-A4MD-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DE-A4MD-01 8 133935598 133935600 AGA - TG In_Frame_Del p.Q1515del 0.39 TCGA-DE-A4MD-01 8 53045843 53045843 G A ST18 Silent p.C773C 0.30 TCGA-DE-A4MD-01 8 6371296 6371296 G A ANGPT2 Missense_Mutation p.R368C 0.52 tolerated(0.05) benign(0.394) TCGA-DE-A4MD-01 X 71493125 71493125 T A RPS4X Missense_Mutation p.N216I 1.00 deleterious(0.01) possibly_damaging(0.612) TCGA-DE-A69J-01 12 70178581 70178581 G A RAB3IP Missense_Mutation p.A214T 0.05 deleterious(0) probably_damaging(1) TCGA-DE-A69J-01 14 104552174 104552174 C T ASPG Missense_Mutation p.R23W 0.05 deleterious(0) probably_damaging(0.939) TCGA-DE-A69J-01 16 24567752 24567752 A G RBBP6 Missense_Mutation p.I220V 0.30 tolerated_low_confidence(0.16) benign(0.159) TCGA-DE-A69J-01 17 56663324 56663324 G A TEX14 Nonsense_Mutation p.Q976* 0.15 TCGA-DE-A69J-01 19 10928101 10928101 A G DNM2 Intron 0.22 TCGA-DE-A69J-01 19 3224964 3224964 T C CELF5 Missense_Mutation p.V76A 0.18 deleterious(0) benign(0.009) TCGA-DE-A69J-01 19 57835089 57835089 C T ZNF543 Nonsense_Mutation p.Q20* 0.41 TCGA-DE-A69J-01 2 26702191 26702191 G A OTOF Missense_Mutation p.P719S 0.09 tolerated(0.16) benign(0.017) TCGA-DE-A69J-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DE-A69J-01 8 87641268 87641271 GTTC CTTTT CNGB3 Frame_Shift_Ins p.N453Kfs*9 0.36 TCGA-DE-A69J-01 9 138012074 138012074 C T OLFM1 3'UTR 0.32 TCGA-DE-A69K-01 10 95661269 95661269 A G SLC35G1 3'UTR 0.07 TCGA-DE-A69K-01 12 101005793 101005793 A G GAS2L3 Missense_Mutation p.K107E 0.07 deleterious(0) benign(0.102) TCGA-DE-A69K-01 12 124069152 124069152 G A TMED2 5'UTR 0.27 TCGA-DE-A69K-01 12 71139698 71139698 C T PTPRR Missense_Mutation p.V303M 0.35 tolerated(0.13) benign(0.25) TCGA-DE-A69K-01 14 21542982 21542982 G A ARHGEF40 Missense_Mutation p.A365T 0.54 tolerated(0.34) benign(0.001) TCGA-DE-A69K-01 15 102516427 102516427 G A WASH3P 3'Flank 0.16 TCGA-DE-A69K-01 16 31098889 31098889 A G RP11-196G11.1 Missense_Mutation p.W146R 0.10 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-DE-A69K-01 19 15482768 15482768 T C AKAP8 Missense_Mutation p.K345E 0.05 tolerated(0.49) benign(0.05) TCGA-DE-A69K-01 19 36431282 36431282 G A LRFN3 Missense_Mutation p.A319T 0.50 deleterious(0.04) possibly_damaging(0.817) TCGA-DE-A69K-01 1 145075950 145075950 T C PDE4DIP 5'UTR 0.33 TCGA-DE-A69K-01 1 167096881 167096881 G A DUSP27 Missense_Mutation p.R838Q 0.07 tolerated(0.14) benign(0.002) TCGA-DE-A69K-01 22 46835246 46835246 C G CELSR1 Missense_Mutation p.G1416R 0.20 deleterious(0.02) probably_damaging(1) TCGA-DE-A69K-01 2 54558090 54558090 G C C2orf73 5'UTR 0.36 TCGA-DE-A69K-01 5 75594619 75594619 A T SV2C Missense_Mutation p.R501S 0.37 tolerated(0.07) possibly_damaging(0.811) TCGA-DE-A69K-01 6 88854552 88854552 G A CNR1 Missense_Mutation p.R148C 0.41 deleterious(0.01) probably_damaging(1) TCGA-DE-A69K-01 7 101758552 101758555 AAGT - CUX1 Splice_Site p.X236_splice 0.39 TCGA-DE-A69K-01 7 154754101 154754101 A C PAXIP1 Missense_Mutation p.M686R 0.37 deleterious(0) unknown(0) TCGA-DE-A69K-01 9 19093294 19093294 C T HAUS6 Missense_Mutation p.C104Y 0.40 deleterious(0) probably_damaging(0.938) TCGA-DE-A69K-01 9 43822703 43822703 C T CNTNAP3B Silent p.F419F 0.35 TCGA-DE-A69K-01 9 734778 734778 A G KANK1 Silent p.A1092A 0.32 TCGA-DE-A7U5-01 12 56563450 56563450 C T SMARCC2 Missense_Mutation p.E829K 0.40 tolerated(0.16) benign(0.011) TCGA-DE-A7U5-01 15 98995117 98995117 T C FAM169B Missense_Mutation p.T103A 0.39 tolerated(0.06) benign(0.303) TCGA-DE-A7U5-01 22 29904501 29904501 C G THOC5 Missense_Mutation p.S666T 0.14 tolerated(0.99) benign(0.153) TCGA-DE-A7U5-01 22 46768939 46768939 C A CELSR1 Missense_Mutation p.V2534F 0.15 deleterious(0.01) possibly_damaging(0.836) TCGA-DE-A7U5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-DE-A7U5-01 X 57146792 57146792 C G SPIN2B Missense_Mutation p.D91H 0.18 deleterious(0) probably_damaging(1) TCGA-DJ-A13L-01 10 112262508 112262508 C G DUSP5 Missense_Mutation p.P137A 0.18 deleterious(0.02) possibly_damaging(0.814) TCGA-DJ-A13L-01 11 18633034 18633034 C T SPTY2D1 Missense_Mutation p.E652K 0.08 deleterious(0) probably_damaging(0.998) TCGA-DJ-A13L-01 11 55371297 55371297 G T OR4C11 Missense_Mutation p.L185I 0.19 deleterious(0.01) possibly_damaging(0.764) TCGA-DJ-A13L-01 12 115120663 115120663 G A TBX3 Nonsense_Mutation p.Q115* 0.09 TCGA-DJ-A13L-01 12 121441894 121441894 C T C12orf43 3'UTR 0.18 TCGA-DJ-A13L-01 12 133220461 133220461 G A POLE Silent p.L1418L 0.07 TCGA-DJ-A13L-01 12 39716485 39716485 G A KIF21A Missense_Mutation p.S1219F 0.09 tolerated(0.1) possibly_damaging(0.498) TCGA-DJ-A13L-01 14 105416999 105416999 C G AHNAK2 Missense_Mutation p.D1597H 0.07 possibly_damaging(0.868) TCGA-DJ-A13L-01 14 74340912 74340912 G A PTGR2 Missense_Mutation p.E115K 0.11 tolerated(0.42) benign(0.001) TCGA-DJ-A13L-01 15 44093955 44093955 G A HYPK Missense_Mutation p.R114Q 0.15 deleterious(0.04) benign(0.313) TCGA-DJ-A13L-01 15 44120432 44120432 A G WDR76 Silent p.Q110Q 0.26 TCGA-DJ-A13L-01 15 48802244 48802244 C T FBN1 Missense_Mutation p.E571K 0.09 benign(0.162) TCGA-DJ-A13L-01 15 49320810 49320810 C T SECISBP2L Missense_Mutation p.G245D 0.06 deleterious(0.04) possibly_damaging(0.71) TCGA-DJ-A13L-01 16 30997755 30997755 G A HSD3B7 Missense_Mutation p.V112M 0.20 deleterious(0) probably_damaging(0.998) TCGA-DJ-A13L-01 16 3349586 3349587 - C TIGD7 Frame_Shift_Ins p.W344Mfs*5 0.12 TCGA-DJ-A13L-01 17 80583323 80583323 G C WDR45B Missense_Mutation p.F123L 0.08 deleterious(0) benign(0.211) TCGA-DJ-A13L-01 19 14938639 14938639 G T OR7A5 Missense_Mutation p.H139N 0.15 deleterious_low_confidence(0.03) benign(0) TCGA-DJ-A13L-01 19 2717588 2717588 G A DIRAS1 Missense_Mutation p.R73C 0.14 deleterious(0.04) probably_damaging(1) TCGA-DJ-A13L-01 19 38958277 38958277 A T RYR1 Missense_Mutation p.D1069V 0.17 probably_damaging(0.96) TCGA-DJ-A13L-01 19 54418665 54418665 C T CACNG7 Silent p.L110L 0.07 TCGA-DJ-A13L-01 1 150727538 150727538 C T CTSS Missense_Mutation p.R113Q 0.09 tolerated(0.65) benign(0) TCGA-DJ-A13L-01 20 10025162 10025162 C G ANKEF1 Missense_Mutation p.H223D 0.10 deleterious(0) probably_damaging(1) TCGA-DJ-A13L-01 20 6068514 6068514 G A FERMT1 Silent p.P427P 0.19 TCGA-DJ-A13L-01 20 62121972 62121972 C T EEF1A2 Missense_Mutation p.E297K 0.20 deleterious_low_confidence(0.02) possibly_damaging(0.511) TCGA-DJ-A13L-01 22 31851280 31851280 G C EIF4ENIF1 Missense_Mutation p.S374C 0.11 deleterious(0) probably_damaging(0.998) TCGA-DJ-A13L-01 22 50894771 50894771 G C SBF1 Missense_Mutation p.F1380L 0.10 tolerated(0.62) benign(0.011) TCGA-DJ-A13L-01 2 153003678 153003678 G C STAM2 Missense_Mutation p.Q149E 0.06 tolerated(0.06) possibly_damaging(0.784) TCGA-DJ-A13L-01 2 74699821 74699821 G A MRPL53 5'UTR 0.16 TCGA-DJ-A13L-01 3 143691563 143691563 C G C3orf58 Missense_Mutation p.T130S 0.21 tolerated(0.52) benign(0.003) TCGA-DJ-A13L-01 3 183882940 183882940 G A DVL3 Silent p.L213L 0.07 TCGA-DJ-A13L-01 4 141543797 141543797 G C TBC1D9 Missense_Mutation p.A1118G 0.20 tolerated_low_confidence(0.45) benign(0.001) TCGA-DJ-A13L-01 4 152203401 152203401 C A PRSS48 Missense_Mutation p.P106H 0.05 deleterious(0) probably_damaging(0.998) TCGA-DJ-A13L-01 5 137595283 137595283 C G GFRA3 Missense_Mutation p.W145C 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-DJ-A13L-01 6 43173160 43173160 C T CUL9 Nonsense_Mutation p.Q1598* 0.09 TCGA-DJ-A13L-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.14 deleterious(0) probably_damaging(0.967) TCGA-DJ-A13L-01 7 23775294 23775294 A T STK31 Silent p.G207G 0.25 TCGA-DJ-A13L-01 7 5662479 5662479 G A RNF216 3'UTR 0.12 TCGA-DJ-A13L-01 8 48798637 48798637 G A PRKDC Silent p.G1547G 0.25 TCGA-DJ-A13L-01 8 48798638 48798638 C A PRKDC Missense_Mutation p.G1547V 0.25 benign(0.02) TCGA-DJ-A13L-01 8 6378718 6378721 AGTC - ANGPT2 Frame_Shift_Del p.T260* 0.17 TCGA-DJ-A13L-01 8 8185788 8185788 G A SGK223 Missense_Mutation p.S835F 0.20 possibly_damaging(0.896) TCGA-DJ-A13L-01 9 12695656 12695656 C T TYRP1 Missense_Mutation p.T176M 0.22 deleterious(0.04) possibly_damaging(0.528) TCGA-DJ-A13L-01 9 131709562 131709562 A G DOLK Silent p.S7S 0.27 TCGA-DJ-A13M-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.43 tolerated(0.07) benign(0.069) TCGA-DJ-A13M-01 11 65273305 65273305 C G MALAT1 RNA 0.50 TCGA-DJ-A13M-01 12 106460544 106460544 C T NUAK1 3'UTR 0.39 TCGA-DJ-A13M-01 12 118112098 118112098 G A KSR2 Intron 0.18 TCGA-DJ-A13M-01 13 110830543 110830543 C T COL4A1 Missense_Mutation p.G832R 0.03 benign(0.181) TCGA-DJ-A13M-01 16 31499763 31499763 T G SLC5A2 Missense_Mutation p.C361G 0.67 deleterious(0) probably_damaging(0.999) TCGA-DJ-A13M-01 17 77073871 77073871 G A ENGASE Missense_Mutation p.R114H 0.36 deleterious(0) probably_damaging(0.994) TCGA-DJ-A13M-01 19 36558892 36558892 G T WDR62 Nonsense_Mutation p.E288* 0.14 TCGA-DJ-A13M-01 7 35280519 35280519 G A TBX20 Missense_Mutation p.T262M 0.41 deleterious(0.03) probably_damaging(0.995) TCGA-DJ-A13O-01 12 121766258 121766258 C T ANAPC5 Missense_Mutation p.A389T 0.11 deleterious(0) possibly_damaging(0.908) TCGA-DJ-A13O-01 12 42860031 42860031 T C PRICKLE1 Missense_Mutation p.Y247C 0.17 deleterious(0) probably_damaging(0.999) TCGA-DJ-A13O-01 1 233750036 233750036 T A KCNK1 Missense_Mutation p.V40D 0.16 deleterious(0) possibly_damaging(0.832) TCGA-DJ-A13O-01 5 137504371 137504371 G A BRD8 Intron 0.12 TCGA-DJ-A13O-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.12 deleterious(0) probably_damaging(0.967) TCGA-DJ-A13P-01 11 118374769 118374769 A T KMT2A Missense_Mutation p.D2721V 0.07 probably_damaging(0.998) TCGA-DJ-A13P-01 11 35232956 35232956 T C CD44 Silent p.T590T 0.03 TCGA-DJ-A13P-01 12 54348806 54348806 G T HOXC12 Silent p.A31A 0.11 TCGA-DJ-A13P-01 17 6348539 6348539 G A FAM64A Missense_Mutation p.E37K 0.39 tolerated(0.3) benign(0.329) TCGA-DJ-A13P-01 20 60886750 60886750 C T LAMA5 Silent p.P3242P 0.42 TCGA-DJ-A13P-01 4 83349287 83349287 G A HNRNPDL Missense_Mutation p.P220S 0.05 deleterious(0) possibly_damaging(0.841) TCGA-DJ-A13P-01 5 37169637 37169637 T A C5orf42 Missense_Mutation p.L2163F 0.38 tolerated(0.15) benign(0.046) TCGA-DJ-A13P-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-DJ-A13P-01 X 13778527 13778527 A T OFD1 Nonsense_Mutation p.R650* 0.23 TCGA-DJ-A13P-01 X 22112115 22112115 T G PHEX Silent p.L249L 0.09 TCGA-DJ-A13R-01 11 74979939 74979939 G A ARRB1 Missense_Mutation p.R363W 0.31 deleterious(0.02) possibly_damaging(0.462) TCGA-DJ-A13R-01 12 120589045 120589045 C G GCN1L1 Missense_Mutation p.V1405L 0.05 possibly_damaging(0.729) TCGA-DJ-A13R-01 12 44172022 44172022 C T IRAK4 Silent p.H286H 0.25 TCGA-DJ-A13R-01 13 46563027 46563027 T C ZC3H13 Missense_Mutation p.R384G 0.08 unknown(0) TCGA-DJ-A13R-01 14 69795278 69795278 G A GALNT16 Missense_Mutation p.R227Q 0.27 deleterious(0) probably_damaging(0.924) TCGA-DJ-A13R-01 17 10209906 10209906 G A MYH13 Missense_Mutation p.T1779I 0.16 deleterious(0) benign(0.19) TCGA-DJ-A13R-01 17 72874555 72874555 C T FADS6 Missense_Mutation p.E320K 0.21 deleterious(0.01) possibly_damaging(0.881) TCGA-DJ-A13R-01 1 99161131 99161131 G T SNX7 Missense_Mutation p.V233F 0.31 deleterious(0.04) probably_damaging(0.911) TCGA-DJ-A13R-01 20 47611021 47611021 C T ARFGEF2 Nonsense_Mutation p.Q1003* 0.22 TCGA-DJ-A13R-01 3 164741469 164741469 T A SI Silent p.T996T 0.28 TCGA-DJ-A13R-01 4 170628369 170628369 C T CLCN3 Nonsense_Mutation p.Q701* 0.22 TCGA-DJ-A13R-01 5 140050731 140050731 C T WDR55 3'UTR 0.25 TCGA-DJ-A13R-01 6 3850220 3850220 G A FAM50B Missense_Mutation p.E59K 0.32 tolerated(0.29) benign(0.006) TCGA-DJ-A13R-01 9 139733836 139733836 G A RABL6 Silent p.S553S 0.13 TCGA-DJ-A13S-01 12 78401006 78401006 A C NAV3 Missense_Mutation p.Q563P 0.37 tolerated(0.27) benign(0.009) TCGA-DJ-A13S-01 14 50241313 50241313 T C KLHDC2 Missense_Mutation p.S90P 0.07 tolerated(0.24) benign(0.134) TCGA-DJ-A13S-01 19 9069489 9069489 G T MUC16 Missense_Mutation p.A5986E 0.35 unknown(0) TCGA-DJ-A13S-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.39 tolerated(0.06) benign(0.006) TCGA-DJ-A13S-01 1 180010893 180010893 G T CEP350 Nonsense_Mutation p.E1440* 0.08 TCGA-DJ-A13S-01 1 248366857 248366857 C A OR2M3 Missense_Mutation p.T163K 0.35 deleterious(0) possibly_damaging(0.694) TCGA-DJ-A13S-01 20 34809819 34809819 G A EPB41L1 Missense_Mutation p.E825K 0.35 deleterious(0) probably_damaging(0.998) TCGA-DJ-A13S-01 21 45540253 45540253 G - PWP2 Frame_Shift_Del p.G405Afs*14 0.34 TCGA-DJ-A13S-01 2 168105213 168105213 G A XIRP2 Silent p.K2437K 0.33 TCGA-DJ-A13S-01 2 85663607 85663607 G A SH2D6 Missense_Mutation p.A144T 0.05 tolerated(0.16) benign(0.077) TCGA-DJ-A13S-01 3 112993298 112993298 C A BOC Missense_Mutation p.N437K 0.09 tolerated(0.38) benign(0.01) TCGA-DJ-A13S-01 4 87662917 87662917 G A PTPN13 Missense_Mutation p.R812H 0.08 deleterious(0) probably_damaging(1) TCGA-DJ-A13S-01 5 138643173 138643173 G A MATR3 Silent p.A23A 0.28 TCGA-DJ-A13S-01 5 58120914 58120914 G T RAB3C Missense_Mutation p.V141F 0.36 deleterious(0) probably_damaging(0.965) TCGA-DJ-A13S-01 7 140706217 140706217 T A MRPS33 3'UTR 0.04 TCGA-DJ-A13S-01 8 133905936 133905961 TCCTGGCTCCTGTGAGGAAGCAAAGC - TG Frame_Shift_Del p.G923Cfs*6 0.22 TCGA-DJ-A13S-01 X 18664181 18664181 G A CDKL5 Missense_Mutation p.R923H 0.20 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-DJ-A13T-01 11 71734181 71734181 T C NUMA1 Missense_Mutation p.H74R 0.39 benign(0.005) TCGA-DJ-A13T-01 12 122292689 122292689 C T HPD Missense_Mutation p.E112K 0.45 tolerated(0.54) benign(0.005) TCGA-DJ-A13T-01 12 47168909 47168909 A T SLC38A4 Missense_Mutation p.L408I 0.38 tolerated(0.21) benign(0.001) TCGA-DJ-A13T-01 13 84453858 84453858 G A SLITRK1 Silent p.N595N 0.06 TCGA-DJ-A13T-01 15 66857767 66857767 C G LCTL 5'UTR 0.69 TCGA-DJ-A13T-01 19 38190685 38190685 C A ZNF607 Missense_Mutation p.C116F 0.39 deleterious(0.02) probably_damaging(0.96) TCGA-DJ-A13T-01 19 7754305 7754305 G A FCER2 Missense_Mutation p.P247L 0.56 tolerated(0.1) benign(0.234) TCGA-DJ-A13T-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-DJ-A13T-01 X 26212809 26212809 G A MAGEB6 Silent p.L282L 0.03 TCGA-DJ-A13U-01 10 50952733 50952733 A C OGDHL Missense_Mutation p.I565M 0.04 tolerated(0.21) benign(0.158) TCGA-DJ-A13U-01 10 71243586 71243586 T C TSPAN15 Missense_Mutation p.I79T 0.04 deleterious(0) possibly_damaging(0.551) TCGA-DJ-A13U-01 16 9197107 9197107 G A C16orf72 Missense_Mutation p.A192T 0.08 tolerated(0.06) probably_damaging(0.998) TCGA-DJ-A13U-01 17 27074944 27074944 T A TRAF4 Missense_Mutation p.S93R 0.43 deleterious(0.02) benign(0.197) TCGA-DJ-A13U-01 1 27949582 27949582 C T FGR Silent p.K100K 0.16 TCGA-DJ-A13U-01 21 22804492 22804492 C A NCAM2 Silent p.S515S 0.08 TCGA-DJ-A13U-01 22 31008997 31008997 A G TCN2 Missense_Mutation p.K132R 0.52 deleterious(0) probably_damaging(1) TCGA-DJ-A13U-01 3 100170607 100170608 - TCCTAGAAGGCATTCTCATGAGGACCAGGAATTCCGATGCCGATCGTCTGACCGTCT LNP1 Nonsense_Mutation p.R67_R68insS*KAFS*GPGIPMPIV*PS 0.11 TCGA-DJ-A13U-01 4 178359917 178359917 G A AGA Silent p.C163C 0.09 TCGA-DJ-A13U-01 4 76881302 76881302 T C SDAD1 Missense_Mutation p.Y467C 0.08 deleterious(0) probably_damaging(0.995) TCGA-DJ-A13U-01 6 37467655 37467655 C T CCDC167 5'UTR 0.08 TCGA-DJ-A13U-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-DJ-A13U-01 7 142563827 142563827 C T EPHB6 Silent p.V405V 0.43 TCGA-DJ-A13U-01 8 125499517 125499517 A G RNF139 Missense_Mutation p.I543V 0.34 tolerated(0.17) benign(0.165) TCGA-DJ-A13U-01 9 104357184 104357184 T A PPP3R2 Missense_Mutation p.Y10F 0.36 tolerated(0.48) benign(0.001) TCGA-DJ-A13U-01 9 117071596 117071596 G A COL27A1 Silent p.E1758E 0.39 TCGA-DJ-A13U-01 9 74975033 74975033 T G ZFAND5 Missense_Mutation p.K86Q 0.04 tolerated(0.59) benign(0.01) TCGA-DJ-A13V-01 11 120989075 120989075 G A TECTA Missense_Mutation p.R284H 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-DJ-A13V-01 16 21809170 21809170 T C RP11-645C24.5 5'Flank 0.44 TCGA-DJ-A13V-01 17 42850752 42850752 C T ADAM11 Missense_Mutation p.R317W 0.08 deleterious(0) possibly_damaging(0.78) TCGA-DJ-A13V-01 17 8012504 8012504 G A ALOXE3 Missense_Mutation p.A649V 0.49 tolerated(0.26) possibly_damaging(0.523) TCGA-DJ-A13V-01 19 53887272 53887272 T C ZNF525 3'UTR 0.10 TCGA-DJ-A13V-01 19 8987282 8987282 C T MUC16 Silent p.L13935L 0.19 TCGA-DJ-A13V-01 21 45959307 45959307 C T KRTAP10-1 Missense_Mutation p.A243T 0.28 tolerated(0.14) unknown(0) TCGA-DJ-A13V-01 3 132196865 132196865 A C DNAJC13 Missense_Mutation p.T864P 0.49 tolerated(0.1) benign(0.015) TCGA-DJ-A13V-01 3 182937644 182937644 C T MCF2L2 Silent p.K790K 0.32 TCGA-DJ-A13V-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-DJ-A13V-01 X 92964801 92964801 G T FAM133A Missense_Mutation p.G128V 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-DJ-A13W-01 12 72388217 72388217 A G TPH2 Splice_Site p.X314_splice 0.43 TCGA-DJ-A13W-01 12 78515989 78515989 C T NAV3 Missense_Mutation p.T1340I 0.07 tolerated(0.06) possibly_damaging(0.907) TCGA-DJ-A13W-01 17 39296226 39296226 G A KRTAP4-6 Missense_Mutation p.R172C 0.60 deleterious(0.02) unknown(0) TCGA-DJ-A13W-01 19 11287390 11287390 C T KANK2 Missense_Mutation p.A550T 0.18 tolerated(0.26) benign(0.423) TCGA-DJ-A13W-01 1 248224344 248224344 C T OR2L3 Missense_Mutation p.R121C 0.42 deleterious(0.01) benign(0.052) TCGA-DJ-A13W-01 22 26937461 26937461 G A TPST2 Missense_Mutation p.R46W 0.05 deleterious(0.03) benign(0.28) TCGA-DJ-A13W-01 2 218696243 218696243 G C TNS1 Missense_Mutation p.T978R 0.38 deleterious(0) probably_damaging(0.998) TCGA-DJ-A13W-01 3 134670486 134670486 C T EPHB1 Missense_Mutation p.P133S 0.28 tolerated(0.18) probably_damaging(0.987) TCGA-DJ-A13W-01 3 169700673 169700673 G A SEC62 Missense_Mutation p.D144N 0.06 tolerated(0.14) possibly_damaging(0.822) TCGA-DJ-A13W-01 6 33669185 33669185 C G UQCC2 Missense_Mutation p.E51Q 0.04 deleterious(0.02) probably_damaging(0.911) TCGA-DJ-A13W-01 6 74171496 74171496 C G MTO1 5'UTR 0.16 TCGA-DJ-A13W-01 9 140809138 140809138 G A CACNA1B Missense_Mutation p.A219T 0.27 deleterious(0.01) probably_damaging(0.945) TCGA-DJ-A13W-01 X 128709875 128709875 T A OCRL Missense_Mutation p.F572Y 0.42 deleterious(0) probably_damaging(0.998) TCGA-DJ-A13W-01 X 128709895 128709895 T C OCRL Missense_Mutation p.F579L 0.40 deleterious(0.01) probably_damaging(0.998) TCGA-DJ-A13X-01 10 71010063 71010063 G A HKDC1 Missense_Mutation p.A530T 0.03 deleterious(0.01) possibly_damaging(0.555) TCGA-DJ-A13X-01 15 59510196 59510196 C T MYO1E Missense_Mutation p.G334D 0.04 deleterious(0.01) possibly_damaging(0.737) TCGA-DJ-A13X-01 16 30715587 30715587 G A SRCAP Missense_Mutation p.G86D 0.04 unknown(0) TCGA-DJ-A13X-01 16 67701334 67701334 C G C16orf86 Missense_Mutation p.P80A 0.15 tolerated_low_confidence(0.17) possibly_damaging(0.728) TCGA-DJ-A13X-01 19 11489201 11489201 G A EPOR Missense_Mutation p.A329V 0.42 tolerated(0.18) benign(0.023) TCGA-DJ-A13X-01 19 56561809 56561809 G A NLRP5 Missense_Mutation p.A995T 0.05 tolerated(0.5) benign(0.021) TCGA-DJ-A13X-01 1 109268557 109268557 T G FNDC7 Missense_Mutation p.F348V 0.04 deleterious(0.02) possibly_damaging(0.889) TCGA-DJ-A13X-01 1 92430277 92430277 G C BRDT Missense_Mutation p.E96Q 0.05 tolerated(0.3) benign(0.033) TCGA-DJ-A13X-01 2 45588 45588 G C FAM110C Silent p.G266G 0.21 TCGA-DJ-A13X-01 2 45589 45589 C A FAM110C Missense_Mutation p.G266V 0.21 deleterious(0.01) possibly_damaging(0.742) TCGA-DJ-A13X-01 7 100482086 100482086 G C SRRT Missense_Mutation p.K285N 0.08 tolerated(0.16) possibly_damaging(0.881) TCGA-DJ-A13X-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-DJ-A13X-01 7 45067320 45067320 G A CCM2 Missense_Mutation p.R6Q 0.19 tolerated_low_confidence(0.35) benign(0.003) TCGA-DJ-A1QD-01 15 89401667 89401667 G A ACAN Missense_Mutation p.A1951T 0.16 tolerated(0.28) probably_damaging(0.999) TCGA-DJ-A1QD-01 1 110170763 110170763 T C AMPD2 Missense_Mutation p.I434T 0.16 deleterious(0) probably_damaging(0.994) TCGA-DJ-A1QD-01 5 147716006 147716006 C T SPINK9 Missense_Mutation p.T26M 0.22 tolerated(0.12) benign(0.002) TCGA-DJ-A1QD-01 6 133070907 133070907 C T VNN2 Missense_Mutation p.G433D 0.06 deleterious(0) probably_damaging(1) TCGA-DJ-A1QD-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QD-01 7 150493471 150493471 C T TMEM176B Missense_Mutation p.E63K 0.34 tolerated(0.39) benign(0.004) TCGA-DJ-A1QD-01 9 5765543 5765543 G A KIAA1432 Missense_Mutation p.E991K 0.09 deleterious(0.01) benign(0.257) TCGA-DJ-A1QD-01 9 98997768 98997768 G T HSD17B3 Missense_Mutation p.L303M 0.16 deleterious(0.01) probably_damaging(0.919) TCGA-DJ-A1QD-01 X 106840699 106840699 C A FRMPD3 Nonsense_Mutation p.Y563* 0.27 TCGA-DJ-A1QE-01 10 134743170 134743170 C T TTC40 Intron 0.12 TCGA-DJ-A1QE-01 11 17190952 17190952 T G PIK3C2A Missense_Mutation p.K113Q 0.08 deleterious_low_confidence(0.02) benign(0.183) TCGA-DJ-A1QE-01 11 6422254 6422254 T C APBB1 Missense_Mutation p.Y544C 0.47 tolerated(0.19) benign(0.048) TCGA-DJ-A1QE-01 12 132334395 132334395 C T MMP17 Missense_Mutation p.P418L 0.06 deleterious(0) probably_damaging(1) TCGA-DJ-A1QE-01 12 49485004 49485005 - GTTGCG DHH In_Frame_Ins p.R156_N157dup 0.28 TCGA-DJ-A1QE-01 14 104224043 104224043 T C PPP1R13B Missense_Mutation p.M134V 0.04 deleterious(0) benign(0.437) TCGA-DJ-A1QE-01 14 45542645 45542645 T C FAM179B Missense_Mutation p.S1682P 0.18 deleterious(0.04) probably_damaging(0.946) TCGA-DJ-A1QE-01 17 1564570 1564570 A C PRPF8 Missense_Mutation p.Y1445D 0.19 deleterious(0) possibly_damaging(0.905) TCGA-DJ-A1QE-01 17 41342634 41342634 C T NBR1 Missense_Mutation p.P235L 0.29 deleterious(0) possibly_damaging(0.903) TCGA-DJ-A1QE-01 17 48156258 48156258 G A ITGA3 Missense_Mutation p.D790N 0.35 deleterious(0.05) probably_damaging(1) TCGA-DJ-A1QE-01 17 58740498 58740499 - A PPM1D Frame_Shift_Ins p.D470Rfs*6 0.11 TCGA-DJ-A1QE-01 19 889754 889754 C T MED16 Missense_Mutation p.A111T 0.28 tolerated(0.49) benign(0.019) TCGA-DJ-A1QE-01 1 242428743 242428743 C T PLD5 Missense_Mutation p.R168H 0.36 tolerated(0.22) benign(0.003) TCGA-DJ-A1QE-01 3 119336952 119336952 C T PLA1A Missense_Mutation p.P281S 0.07 deleterious(0.03) probably_damaging(1) TCGA-DJ-A1QE-01 3 170586127 170586127 G T RPL22L1 Missense_Mutation p.T21N 0.41 deleterious(0) probably_damaging(0.978) TCGA-DJ-A1QE-01 3 52454958 52454958 A G PHF7 Silent p.Q151Q 0.40 TCGA-DJ-A1QE-01 7 123599696 123599696 C G SPAM1 Missense_Mutation p.N401K 0.12 deleterious(0) probably_damaging(0.971) TCGA-DJ-A1QE-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.53 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QE-01 8 118817027 118817027 A G EXT1 Silent p.A663A 0.19 TCGA-DJ-A1QE-01 X 2864076 2864076 C A ARSE Silent p.L318L 0.40 TCGA-DJ-A1QE-01 X 55514742 55514742 G C USP51 Missense_Mutation p.L211V 0.14 deleterious(0.01) possibly_damaging(0.899) TCGA-DJ-A1QF-01 10 91144286 91144286 T C IFIT1B Silent p.L406L 0.36 TCGA-DJ-A1QF-01 12 102559570 102559570 G A PARPBP Missense_Mutation p.D244N 0.05 deleterious(0.05) probably_damaging(0.986) TCGA-DJ-A1QF-01 16 18860687 18860687 T C SMG1 Silent p.Q1825Q 0.09 TCGA-DJ-A1QF-01 17 80579584 80579584 G A WDR45B Silent p.S173S 0.17 TCGA-DJ-A1QF-01 18 33271056 33271056 G A GALNT1 Silent p.T353T 0.05 TCGA-DJ-A1QF-01 19 9074483 9074483 A G MUC16 Silent p.A4321A 0.40 TCGA-DJ-A1QF-01 1 178834453 178834453 T C ANGPTL1 Silent p.Q153Q 0.28 TCGA-DJ-A1QF-01 1 215792548 215792548 T C KCTD3 Silent p.L601L 0.16 TCGA-DJ-A1QF-01 5 141307808 141307808 C A KIAA0141 Silent p.S119S 0.09 TCGA-DJ-A1QF-01 5 172755126 172755126 C G STC2 Missense_Mutation p.G24A 0.17 deleterious(0.04) possibly_damaging(0.798) TCGA-DJ-A1QF-01 7 104782687 104782687 T C SRPK2 Silent p.T437T 0.05 TCGA-DJ-A1QF-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QF-01 9 33676262 33676262 G A PTENP1 RNA 0.20 TCGA-DJ-A1QF-01 X 148044403 148044403 C T AFF2 Missense_Mutation p.T950I 0.10 deleterious(0.04) benign(0.004) TCGA-DJ-A1QG-01 10 95517897 95517897 A C LGI1 5'UTR 0.29 TCGA-DJ-A1QG-01 11 113853948 113853948 A G HTR3A Missense_Mutation p.I167V 0.06 tolerated(0.13) benign(0.272) TCGA-DJ-A1QG-01 11 60274284 60274284 C G MS4A12 Silent p.A224A 0.23 TCGA-DJ-A1QG-01 12 57843479 57843479 A G INHBC Missense_Mutation p.R245G 0.26 tolerated(0.05) benign(0.232) TCGA-DJ-A1QG-01 16 1470345 1470345 C T C16orf91 Missense_Mutation p.A258T 0.37 tolerated_low_confidence(0.66) benign(0.028) TCGA-DJ-A1QG-01 16 14958553 14958553 G T NOMO1 Missense_Mutation p.A503S 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-DJ-A1QG-01 16 65016141 65016141 C A CDH11 Missense_Mutation p.D355Y 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-DJ-A1QG-01 17 42090386 42090386 G T TMEM101 Silent p.L152L 0.09 TCGA-DJ-A1QG-01 19 10449575 10449575 C T ICAM3 Silent p.V42V 0.36 TCGA-DJ-A1QG-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.34 tolerated(0.06) benign(0.006) TCGA-DJ-A1QG-01 1 145534935 145534935 G A ITGA10 Missense_Mutation p.R613Q 0.30 tolerated(0.36) benign(0.228) TCGA-DJ-A1QG-01 1 152328852 152328852 C T FLG2 Silent p.G470G 0.04 TCGA-DJ-A1QG-01 1 169811624 169811624 C T C1orf112 Nonsense_Mutation p.Q598* 0.30 TCGA-DJ-A1QG-01 1 247875916 247875916 A G OR6F1 Silent p.L48L 0.07 TCGA-DJ-A1QG-01 22 29091784 29091784 C A CHEK2 Missense_Mutation p.L434F 0.64 deleterious(0) probably_damaging(0.996) TCGA-DJ-A1QG-01 4 88584444 88584444 A T DMP1 Missense_Mutation p.D505V 0.38 deleterious(0) unknown(0) TCGA-DJ-A1QG-01 6 151779565 151779565 G C C6orf211 Missense_Mutation p.D84H 0.38 deleterious(0) probably_damaging(0.999) TCGA-DJ-A1QG-01 6 169637364 169637364 G A THBS2 Missense_Mutation p.R460C 0.45 deleterious(0) probably_damaging(0.997) TCGA-DJ-A1QG-01 6 27791912 27791912 C G HIST1H4J Missense_Mutation p.R4G 0.29 tolerated_low_confidence(0.06) benign(0.011) TCGA-DJ-A1QG-01 9 108483839 108483839 G A TMEM38B Silent p.P97P 0.07 TCGA-DJ-A1QH-01 10 104119094 104119094 G A GBF1 Missense_Mutation p.C360Y 0.36 deleterious(0.04) benign(0.029) TCGA-DJ-A1QH-01 10 88419674 88419674 T C OPN4 Missense_Mutation p.C286R 0.05 tolerated(0.36) benign(0.005) TCGA-DJ-A1QH-01 11 58170795 58170795 G A OR5B3 Missense_Mutation p.P30S 0.04 tolerated_low_confidence(0.12) benign(0) TCGA-DJ-A1QH-01 11 88911586 88911586 C A TYR Silent p.T155T 0.39 TCGA-DJ-A1QH-01 12 123950629 123950629 G A SNRNP35 Missense_Mutation p.R186Q 0.09 tolerated(0.59) benign(0.139) TCGA-DJ-A1QH-01 12 49742636 49742636 T A DNAJC22 5'UTR 0.42 TCGA-DJ-A1QH-01 12 7045484 7045484 C - ATN1 Frame_Shift_Del p.L352Wfs*20 0.26 TCGA-DJ-A1QH-01 12 9352975 9352975 A C PZP Missense_Mutation p.I247R 0.29 deleterious(0) possibly_damaging(0.466) TCGA-DJ-A1QH-01 14 50318332 50318332 T C NEMF Silent p.T60T 0.05 TCGA-DJ-A1QH-01 14 64908830 64908830 C T MTHFD1 Missense_Mutation p.S648F 0.08 deleterious(0) probably_damaging(1) TCGA-DJ-A1QH-01 15 42115281 42115281 C T MAPKBP1 Silent p.S1159S 0.42 TCGA-DJ-A1QH-01 16 56642535 56642535 C T MT2A 5'UTR 0.35 TCGA-DJ-A1QH-01 16 70711759 70711759 C T MTSS1L Missense_Mutation p.G223D 0.22 tolerated(0.17) probably_damaging(0.984) TCGA-DJ-A1QH-01 17 53063607 53063607 A G STXBP4 Silent p.V9V 0.40 TCGA-DJ-A1QH-01 18 3102502 3102502 G A MYOM1 Missense_Mutation p.P1182L 0.18 tolerated(0.13) benign(0.198) TCGA-DJ-A1QH-01 1 101705451 101705451 C T S1PR1 Missense_Mutation p.S304F 0.38 deleterious(0) probably_damaging(1) TCGA-DJ-A1QH-01 21 19770630 19770630 C T TMPRSS15 Silent p.Q54Q 0.05 TCGA-DJ-A1QH-01 2 160637475 160637477 TTC - LY75-CD302 In_Frame_Del p.E1712del 0.40 TCGA-DJ-A1QH-01 6 100838751 100838751 T A SIM1 Missense_Mutation p.N596I 0.43 deleterious_low_confidence(0) possibly_damaging(0.516) TCGA-DJ-A1QH-01 6 43742103 43742103 A G VEGFA Missense_Mutation p.E211G 0.11 tolerated(0.09) benign(0) TCGA-DJ-A1QH-01 7 128478773 128478773 G A FLNC Missense_Mutation p.A443T 0.28 tolerated(1) benign(0.034) TCGA-DJ-A1QH-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QH-01 9 100085164 100085164 G C CCDC180 Missense_Mutation p.K447N 0.41 tolerated(0.12) benign(0.074) TCGA-DJ-A1QH-01 9 119460294 119460294 C T TRIM32 Silent p.L91L 0.45 TCGA-DJ-A1QH-01 X 102977177 102977177 A G GLRA4 Silent p.D207D 0.04 TCGA-DJ-A1QH-01 X 18748426 18748426 G T PPEF1 Missense_Mutation p.Q58H 0.39 deleterious(0) probably_damaging(0.966) TCGA-DJ-A1QI-01 10 50902594 50902594 T C C10orf53 Intron 0.08 TCGA-DJ-A1QI-01 12 95365174 95365174 A G NDUFA12 3'UTR 0.32 TCGA-DJ-A1QI-01 13 100807310 100807310 C G PCCA Silent p.A126A 0.06 TCGA-DJ-A1QI-01 15 99440012 99440012 C A IGF1R Missense_Mutation p.P327H 0.07 tolerated(0.22) probably_damaging(0.972) TCGA-DJ-A1QI-01 16 74640592 74640592 T - GLG1 Frame_Shift_Del p.N134Tfs*11 0.32 TCGA-DJ-A1QI-01 17 72352829 72352829 G A BTBD17 Silent p.P468P 0.07 TCGA-DJ-A1QI-01 1 236734652 236734652 G A HEATR1 Missense_Mutation p.P1316L 0.05 deleterious(0) probably_damaging(1) TCGA-DJ-A1QI-01 21 15352030 15352030 G T ANKRD20A11P RNA 0.21 TCGA-DJ-A1QI-01 2 190595298 190595298 C G ANKAR Missense_Mutation p.L1091V 0.35 deleterious(0.04) benign(0.21) TCGA-DJ-A1QI-01 3 121097680 121097680 G A STXBP5L Missense_Mutation p.R789Q 0.40 tolerated(0.12) benign(0.064) TCGA-DJ-A1QI-01 6 29556434 29556434 C T OR2H2 Missense_Mutation p.T238I 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-DJ-A1QI-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QI-01 7 21469100 21469100 C T SP4 Missense_Mutation p.A106V 0.40 deleterious(0.01) benign(0.046) TCGA-DJ-A1QL-01 11 113705033 113705033 G A USP28 Nonsense_Mutation p.R187* 0.30 TCGA-DJ-A1QL-01 11 11400737 11400737 G T GALNT18 Missense_Mutation p.R224S 0.30 deleterious(0) possibly_damaging(0.687) TCGA-DJ-A1QL-01 11 64326627 64326627 C T SLC22A11 Silent p.S138S 0.36 TCGA-DJ-A1QL-01 11 65268279 65268279 A T MALAT1 RNA 0.41 TCGA-DJ-A1QL-01 14 24685233 24685233 G C MDP1 5'UTR 0.61 TCGA-DJ-A1QL-01 16 26147154 26147154 G A HS3ST4 Missense_Mutation p.R319Q 0.43 tolerated(0.11) benign(0.165) TCGA-DJ-A1QL-01 19 9070335 9070335 G A MUC16 Missense_Mutation p.T5704I 0.07 unknown(0) TCGA-DJ-A1QL-01 1 203013072 203013072 A T PPFIA4 Missense_Mutation p.H117L 0.37 deleterious(0.01) probably_damaging(1) TCGA-DJ-A1QL-01 20 43836652 43836652 C T SEMG1 Silent p.L238L 0.04 TCGA-DJ-A1QL-01 2 176988939 176988939 C T HOXD9 3'UTR 0.28 TCGA-DJ-A1QL-01 3 113300224 113300224 T G SIDT1 Missense_Mutation p.L227R 0.42 deleterious(0) probably_damaging(0.998) TCGA-DJ-A1QL-01 3 164906912 164906912 G C SLITRK3 Missense_Mutation p.D569E 0.36 tolerated(0.27) benign(0.022) TCGA-DJ-A1QL-01 3 51675796 51675796 G C RAD54L2 Missense_Mutation p.E755Q 0.18 tolerated(0.07) benign(0.412) TCGA-DJ-A1QL-01 3 5255103 5255103 C T EDEM1 Missense_Mutation p.P594S 0.08 tolerated(0.63) benign(0.01) TCGA-DJ-A1QL-01 4 113508691 113508691 C T C4orf21 Silent p.E1174E 0.34 TCGA-DJ-A1QL-01 5 160047602 160047602 T C ATP10B Missense_Mutation p.D723G 0.12 deleterious(0.01) probably_damaging(1) TCGA-DJ-A1QL-01 8 31004953 31004953 T C WRN Missense_Mutation p.L1178P 0.38 deleterious(0) probably_damaging(1) TCGA-DJ-A1QL-01 9 27567087 27567087 G A C9orf72 Missense_Mutation p.A11V 0.40 tolerated(0.21) possibly_damaging(0.84) TCGA-DJ-A1QL-01 9 32631455 32631455 G A TAF1L Missense_Mutation p.R1375W 0.38 deleterious(0) possibly_damaging(0.809) TCGA-DJ-A1QM-01 10 50954867 50954867 C G OGDHL Missense_Mutation p.E409Q 0.08 deleterious(0) probably_damaging(1) TCGA-DJ-A1QM-01 11 117090319 117090319 G A PCSK7 Silent p.F437F 0.09 TCGA-DJ-A1QM-01 16 2373655 2373655 C T ABCA3 Missense_Mutation p.R161K 0.03 tolerated(0.18) benign(0.02) TCGA-DJ-A1QM-01 17 43331805 43331805 G C SPATA32 Missense_Mutation p.I381M 0.05 deleterious(0.02) benign(0.019) TCGA-DJ-A1QM-01 1 27620562 27620562 C T WDTC1 Missense_Mutation p.R238W 0.07 deleterious(0.01) possibly_damaging(0.711) TCGA-DJ-A1QM-01 2 172641902 172641902 C T SLC25A12 Missense_Mutation p.R640K 0.07 tolerated(0.28) benign(0.014) TCGA-DJ-A1QM-01 2 234763191 234763191 C G HJURP 5'UTR 0.10 TCGA-DJ-A1QM-01 3 52539151 52539151 G A STAB1 Missense_Mutation p.D504N 0.08 tolerated(0.52) benign(0.021) TCGA-DJ-A1QM-01 3 57543396 57543396 G A PDE12 Silent p.Q430Q 0.07 TCGA-DJ-A1QM-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.11 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QM-01 8 135649756 135649756 C T ZFAT Silent p.R132R 0.07 TCGA-DJ-A1QM-01 8 22428458 22428458 G C SORBS3 Missense_Mutation p.E489D 0.10 tolerated(0.35) benign(0.17) TCGA-DJ-A1QM-01 9 17789440 17789440 G A SH3GL2 Silent p.K172K 0.11 TCGA-DJ-A1QM-01 X 16720901 16720901 T C CTPS2 Missense_Mutation p.Y42C 0.07 deleterious(0) benign(0.424) TCGA-DJ-A1QM-01 X 16720909 16720909 G A CTPS2 Silent p.I39I 0.06 TCGA-DJ-A1QN-01 10 75563477 75563477 T C NDST2 Missense_Mutation p.N666S 0.22 tolerated(0.08) probably_damaging(0.999) TCGA-DJ-A1QN-01 16 31499718 31499718 G A SLC5A2 Missense_Mutation p.V346M 0.31 deleterious(0) probably_damaging(0.982) TCGA-DJ-A1QN-01 17 74006561 74006561 G A EVPL Nonsense_Mutation p.Q909* 0.16 TCGA-DJ-A1QN-01 1 36786296 36786296 C A SH3D21 Missense_Mutation p.Q678K 0.07 tolerated(0.19) possibly_damaging(0.546) TCGA-DJ-A1QN-01 2 27357185 27357185 G A PREB Silent p.G35G 0.15 TCGA-DJ-A1QN-01 2 74754147 74754148 GG C AUP1 Frame_Shift_Del p.L373* 0.11 TCGA-DJ-A1QN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QO-01 10 88911590 88911591 GT - FAM35A Frame_Shift_Del p.G160Efs*4 0.19 TCGA-DJ-A1QO-01 11 20404724 20404724 G A HTATIP2 Silent p.G268G 0.24 TCGA-DJ-A1QO-01 11 6261928 6261928 C T CNGA4 Nonsense_Mutation p.R302* 0.23 TCGA-DJ-A1QO-01 11 66436191 66436191 T A RBM4B Missense_Mutation p.L328F 0.30 tolerated(0.07) probably_damaging(0.914) TCGA-DJ-A1QO-01 12 78583811 78583811 C T NAV3 Missense_Mutation p.P2013S 0.39 deleterious(0) probably_damaging(0.999) TCGA-DJ-A1QO-01 13 77673090 77673090 C T MYCBP2 Silent p.E2695E 0.32 TCGA-DJ-A1QO-01 14 77844257 77844257 G A SAMD15 Missense_Mutation p.E166K 0.29 tolerated(0.06) benign(0.388) TCGA-DJ-A1QO-01 17 62006502 62006502 A C CD79B 3'UTR 0.37 TCGA-DJ-A1QO-01 17 72278108 72278108 T A DNAI2 Missense_Mutation p.I51N 0.36 deleterious(0) benign(0.275) TCGA-DJ-A1QO-01 1 22816958 22816958 G T ZBTB40 Missense_Mutation p.A173S 0.06 tolerated(0.12) benign(0.364) TCGA-DJ-A1QO-01 20 853514 853514 G T ANGPT4 3'UTR 0.35 TCGA-DJ-A1QO-01 2 179580380 179580380 C G TTN Missense_Mutation p.E8587D 0.32 TCGA-DJ-A1QO-01 2 85276643 85276643 C T KCMF1 Silent p.R252R 0.16 TCGA-DJ-A1QO-01 4 366799 366799 A G ZNF141 Silent p.V191V 0.20 TCGA-DJ-A1QO-01 5 140222123 140222123 C T PCDHA8 Missense_Mutation p.S406L 0.32 deleterious_low_confidence(0) benign(0.221) TCGA-DJ-A1QO-01 5 90084066 90084066 A G GPR98 Missense_Mutation p.K4611R 0.39 benign(0.091) TCGA-DJ-A1QO-01 6 132910122 132910122 G A TAAR5 Missense_Mutation p.T235I 0.37 tolerated(0.1) benign(0.016) TCGA-DJ-A1QO-01 6 157521926 157521926 C T ARID1B Nonsense_Mutation p.Q1400* 0.36 TCGA-DJ-A1QO-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-DJ-A1QQ-01 10 77158996 77159007 GGCCGTTAGCGA - ZNF503 In_Frame_Del p.S481_A484del 0.34 TCGA-DJ-A1QQ-01 11 102711322 102711322 T A MMP3 Missense_Mutation p.T210S 0.25 tolerated(0.11) benign(0.234) TCGA-DJ-A1QQ-01 13 37596275 37596275 G A SUPT20H Intron 0.41 TCGA-DJ-A1QQ-01 15 72190581 72190581 A T MYO9A Missense_Mutation p.F1421L 0.47 deleterious_low_confidence(0.01) probably_damaging(0.963) TCGA-DJ-A1QQ-01 16 4934851 4934851 T C PPL Missense_Mutation p.I1269V 0.05 tolerated(0.1) benign(0.053) TCGA-DJ-A1QQ-01 16 81232604 81232604 G A PKD1L2 Silent p.G402G 0.41 TCGA-DJ-A1QQ-01 17 37333711 37333711 A G CACNB1 Silent p.Y408Y 0.39 TCGA-DJ-A1QQ-01 19 9236922 9236922 A G OR7G3 Silent p.Y235Y 0.16 TCGA-DJ-A1QQ-01 1 203818917 203818917 C G ZC3H11A Missense_Mutation p.Q568E 0.41 tolerated(0.26) benign(0.037) TCGA-DJ-A1QQ-01 22 19706107 19706107 C T SEPT5 Intron 0.07 TCGA-DJ-A1QQ-01 3 38651439 38651439 C T SCN5A Silent p.V240V 0.22 TCGA-DJ-A1QQ-01 3 46725278 46725278 C G ALS2CL Missense_Mutation p.Q302H 0.05 deleterious(0.03) benign(0.031) TCGA-DJ-A1QQ-01 4 20555525 20555525 G C SLIT2 Missense_Mutation p.A887P 0.04 deleterious(0) possibly_damaging(0.676) TCGA-DJ-A1QQ-01 5 128956351 128956351 G C ADAMTS19 Missense_Mutation p.D501H 0.07 tolerated(0.05) probably_damaging(0.984) TCGA-DJ-A1QQ-01 5 179150714 179150714 G T CANX Missense_Mutation p.W484C 0.27 deleterious(0) probably_damaging(0.962) TCGA-DJ-A1QQ-01 6 151914317 151914317 C T CCDC170 Missense_Mutation p.R457W 0.09 deleterious(0) probably_damaging(0.921) TCGA-DJ-A1QQ-01 6 33232649 33232649 C T VPS52 Missense_Mutation p.C437Y 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-DJ-A1QQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PN-01 13 73468026 73468026 A T PIBF1 Missense_Mutation p.E476V 0.45 deleterious(0.02) probably_damaging(0.996) TCGA-DJ-A2PN-01 19 47935698 47935698 G A SLC8A2 Silent p.D705D 0.05 TCGA-DJ-A2PN-01 1 70505355 70505355 C T LRRC7 Missense_Mutation p.S1245L 0.47 deleterious(0) benign(0.08) TCGA-DJ-A2PN-01 3 87017871 87017871 G A VGLL3 Missense_Mutation p.A269V 0.12 tolerated(0.08) benign(0.12) TCGA-DJ-A2PN-01 5 32239191 32239191 C G MTMR12 Missense_Mutation p.Q420H 0.09 deleterious(0) probably_damaging(1) TCGA-DJ-A2PN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PN-01 7 780548 780548 C T HEATR2 Silent p.L291L 0.07 TCGA-DJ-A2PN-01 8 94935010 94935010 G A PDP1 Silent p.K266K 0.41 TCGA-DJ-A2PO-01 12 79990400 79990400 T C PAWR Missense_Mutation p.Y241C 0.36 deleterious(0.05) possibly_damaging(0.794) TCGA-DJ-A2PO-01 16 8952307 8952307 G A CARHSP1 Missense_Mutation p.P61S 0.07 deleterious(0) possibly_damaging(0.708) TCGA-DJ-A2PO-01 18 42281493 42281493 A T SETBP1 Missense_Mutation p.D61V 0.10 deleterious(0) probably_damaging(0.998) TCGA-DJ-A2PO-01 1 12416017 12416017 C G VPS13D Missense_Mutation p.N3247K 0.04 benign(0.298) TCGA-DJ-A2PO-01 1 161024210 161024210 T A ARHGAP30 Missense_Mutation p.Q161L 0.26 deleterious(0) benign(0.286) TCGA-DJ-A2PO-01 2 97909606 97909606 A G ANKRD36 Missense_Mutation p.K1470R 0.15 deleterious(0.01) possibly_damaging(0.899) TCGA-DJ-A2PO-01 7 140374545 140374545 G C ADCK2 Silent p.L356L 0.36 TCGA-DJ-A2PP-01 10 50732508 50732508 T C ERCC6-PGBD3 Missense_Mutation p.K323R 0.37 deleterious_low_confidence(0.05) benign(0.16) TCGA-DJ-A2PP-01 12 106903265 106903265 T A POLR3B Missense_Mutation p.F1114I 0.39 tolerated(0.17) benign(0.26) TCGA-DJ-A2PP-01 15 20876449 20876449 G A NBEAP1 RNA 0.11 TCGA-DJ-A2PP-01 16 67980860 67980860 C T SLC12A4 Missense_Mutation p.E743K 0.33 tolerated(0.2) probably_damaging(0.916) TCGA-DJ-A2PP-01 16 90128716 90128716 T A PRDM7 Intron 0.48 TCGA-DJ-A2PP-01 17 34185530 34185530 C T C17orf66 Splice_Site p.X314_splice 0.29 TCGA-DJ-A2PP-01 17 57232498 57232498 T - SKA2 Frame_Shift_Del p.E9Dfs*2 0.09 TCGA-DJ-A2PP-01 19 14785632 14785632 G A EMR3 5'UTR 0.29 TCGA-DJ-A2PP-01 19 5244253 5244253 T C PTPRS Missense_Mutation p.Q410R 0.39 tolerated(1) probably_damaging(0.992) TCGA-DJ-A2PP-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.41 tolerated(0.06) benign(0.006) TCGA-DJ-A2PP-01 1 153315684 153315684 G A PGLYRP4 Silent p.N118N 0.36 TCGA-DJ-A2PP-01 1 235920719 235920719 T C LYST Silent p.L2307L 0.35 TCGA-DJ-A2PP-01 1 24383949 24383949 C T MYOM3 Missense_Mutation p.V1407I 0.17 tolerated(1) benign(0.037) TCGA-DJ-A2PP-01 2 30966369 30966369 C T CAPN13 Missense_Mutation p.R442H 0.36 tolerated(0.13) possibly_damaging(0.738) TCGA-DJ-A2PP-01 2 51254683 51254683 G A NRXN1 Silent p.C243C 0.12 TCGA-DJ-A2PP-01 3 196674504 196674504 G A PIGZ Missense_Mutation p.L422F 0.19 tolerated(0.11) possibly_damaging(0.841) TCGA-DJ-A2PP-01 5 140736469 140736469 C A PCDHGA4 Missense_Mutation p.P568T 0.09 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-DJ-A2PP-01 5 37169007 37169007 T C C5orf42 Silent p.P2373P 0.18 TCGA-DJ-A2PP-01 6 158910761 158910761 C T TULP4 Missense_Mutation p.P543L 0.12 deleterious(0.01) benign(0.065) TCGA-DJ-A2PP-01 7 16649339 16649339 G A ANKMY2 Silent p.I266I 0.10 TCGA-DJ-A2PP-01 7 92869235 92869235 G A CCDC132 Silent p.R30R 0.31 TCGA-DJ-A2PP-01 8 133935654 133935654 A G TG Missense_Mutation p.K1534E 0.10 tolerated(0.26) benign(0.002) TCGA-DJ-A2PQ-01 16 2053624 2053629 ATGCGT - ZNF598 In_Frame_Del p.Y108_A109del 0.29 TCGA-DJ-A2PQ-01 17 62800992 62800992 G A PLEKHM1P RNA 0.44 TCGA-DJ-A2PQ-01 17 73908312 73908312 G A FBF1 Silent p.L1093L 0.24 TCGA-DJ-A2PQ-01 19 15052786 15052786 C A OR7C2 Silent p.T162T 0.39 TCGA-DJ-A2PQ-01 19 54611759 54611759 A G NDUFA3 3'Flank 0.06 TCGA-DJ-A2PQ-01 3 113955140 113955140 G T ZNF80 Missense_Mutation p.A261D 0.05 deleterious(0.02) benign(0.053) TCGA-DJ-A2PQ-01 3 32932582 32932582 G A TRIM71 Missense_Mutation p.R629H 0.09 deleterious(0) probably_damaging(1) TCGA-DJ-A2PQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.49 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PR-01 12 56396496 56396496 C T SUOX Missense_Mutation p.R74W 0.20 deleterious(0.03) benign(0.003) TCGA-DJ-A2PR-01 15 39885603 39885603 G A THBS1 Missense_Mutation p.D1001N 0.04 deleterious(0.02) probably_damaging(0.96) TCGA-DJ-A2PR-01 17 61762904 61762904 A T MAP3K3 Missense_Mutation p.N253Y 0.32 deleterious(0) possibly_damaging(0.908) TCGA-DJ-A2PR-01 19 50720898 50720898 C T MYH14 Silent p.V144V 0.07 TCGA-DJ-A2PR-01 1 52251509 52251509 C G OSBPL9 Nonsense_Mutation p.S630* 0.06 TCGA-DJ-A2PR-01 3 9976166 9976166 G A CRELD1 Nonsense_Mutation p.W15* 0.05 TCGA-DJ-A2PR-01 6 33171577 33171577 C T SLC39A7 Missense_Mutation p.A466V 0.29 deleterious(0) probably_damaging(0.994) TCGA-DJ-A2PR-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.50 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PR-01 7 99569418 99569418 G C AZGP1 Missense_Mutation p.I96M 0.05 deleterious(0.01) possibly_damaging(0.625) TCGA-DJ-A2PS-01 10 12215790 12215790 G A NUDT5 Silent p.T104T 0.33 TCGA-DJ-A2PS-01 11 72406076 72406076 T C ARAP1 Missense_Mutation p.R1215G 0.09 tolerated(0.24) possibly_damaging(0.464) TCGA-DJ-A2PS-01 11 865530 865530 G A TSPAN4 Silent p.Q116Q 0.10 TCGA-DJ-A2PS-01 13 113740522 113740522 G A MCF2L Missense_Mutation p.V778M 0.06 deleterious(0) probably_damaging(0.933) TCGA-DJ-A2PS-01 1 119965210 119965210 G A HSD3B2 Silent p.R362R 0.05 TCGA-DJ-A2PS-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PS-01 X 118752772 118752772 C T SEPT6 Intron 0.21 TCGA-DJ-A2PT-01 10 135202535 135202535 A G PAOX Silent p.V399V 0.03 TCGA-DJ-A2PT-01 11 134252734 134252734 C T B3GAT1 Missense_Mutation p.R263Q 0.24 tolerated(0.95) benign(0.008) TCGA-DJ-A2PT-01 17 18148317 18148317 G A FLII 3'UTR 0.26 TCGA-DJ-A2PT-01 20 32199070 32199070 C G CBFA2T2 Missense_Mutation p.L126V 0.20 deleterious(0) probably_damaging(0.981) TCGA-DJ-A2PT-01 20 5923212 5923212 C T TRMT6 Silent p.Q296Q 0.22 TCGA-DJ-A2PT-01 3 136647064 136647064 C T NCK1 Missense_Mutation p.T74I 0.32 tolerated(0.09) benign(0.086) TCGA-DJ-A2PT-01 4 81124216 81124216 C T PRDM8 Missense_Mutation p.P534S 0.47 tolerated(0.62) possibly_damaging(0.744) TCGA-DJ-A2PT-01 4 90170054 90170054 G T GPRIN3 Missense_Mutation p.A403D 0.05 deleterious(0.02) possibly_damaging(0.454) TCGA-DJ-A2PT-01 5 140237799 140237799 G A PCDHA10 Silent p.S722S 0.35 TCGA-DJ-A2PT-01 6 13307947 13307947 C A TBC1D7 Nonsense_Mutation p.E184* 0.22 TCGA-DJ-A2PT-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PT-01 X 13798077 13798077 G C GPM6B Missense_Mutation p.A186G 0.09 tolerated(0.22) benign(0.012) TCGA-DJ-A2PT-01 X 148770538 148770538 T C MAGEA11 5'UTR 0.28 TCGA-DJ-A2PU-01 11 67201890 67201890 C T RPS6KB2 Missense_Mutation p.R364W 0.08 deleterious(0) probably_damaging(0.93) TCGA-DJ-A2PU-01 17 679033 679033 G A GLOD4 Missense_Mutation p.R130C 0.26 tolerated(0.12) benign(0.002) TCGA-DJ-A2PU-01 17 74392381 74392381 C T UBE2O Missense_Mutation p.M879I 0.08 deleterious(0.04) benign(0.062) TCGA-DJ-A2PU-01 19 11132573 11132573 C T SMARCA4 Missense_Mutation p.P930L 0.08 probably_damaging(1) TCGA-DJ-A2PU-01 19 53269533 53269533 A G ZNF600 Silent p.H492H 0.04 TCGA-DJ-A2PU-01 2 242617953 242617953 G T DTYMK Missense_Mutation p.H148N 0.43 tolerated(0.52) benign(0) TCGA-DJ-A2PU-01 2 54856728 54856728 C A SPTBN1 Missense_Mutation p.D819E 0.38 tolerated(1) benign(0.011) TCGA-DJ-A2PU-01 4 111434693 111434693 A G ENPEP Missense_Mutation p.I477M 0.45 deleterious(0) probably_damaging(0.996) TCGA-DJ-A2PU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PU-01 X 133700185 133700185 G T PLAC1 Silent p.V176V 0.05 TCGA-DJ-A2PV-01 12 120897756 120897756 C T GATC Silent p.H135H 0.20 TCGA-DJ-A2PV-01 12 7640177 7640177 A G CD163 Missense_Mutation p.S610P 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-DJ-A2PV-01 14 106845426 106845426 A C IGHV3-35 Missense_Mutation p.V83G 0.25 deleterious_low_confidence(0) possibly_damaging(0.903) TCGA-DJ-A2PV-01 15 69072764 69072764 C T ANP32A Missense_Mutation p.E225K 0.12 tolerated(0.09) unknown(0) TCGA-DJ-A2PV-01 1 236719122 236719122 G A HEATR1 Nonsense_Mutation p.R1878* 0.32 TCGA-DJ-A2PV-01 20 20582429 20582429 C T RALGAPA2 Silent p.R700R 0.13 TCGA-DJ-A2PV-01 2 21236165 21236165 A T APOB Missense_Mutation p.N1361K 0.31 probably_damaging(0.994) TCGA-DJ-A2PV-01 5 50091188 50091188 C G PARP8 Silent p.L455L 0.06 TCGA-DJ-A2PV-01 6 7404673 7404673 G A RIOK1 Missense_Mutation p.V293I 0.09 tolerated(0.08) benign(0.031) TCGA-DJ-A2PV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PV-01 X 3560002 3560002 G T PRKX Missense_Mutation p.L204I 0.16 deleterious(0) probably_damaging(0.911) TCGA-DJ-A2PW-01 10 75391700 75391700 T C MYOZ1 Silent p.T296T 0.15 TCGA-DJ-A2PW-01 15 59113964 59113964 G A FAM63B Missense_Mutation p.V391M 0.14 deleterious(0.05) probably_damaging(1) TCGA-DJ-A2PW-01 15 77474126 77474126 T C PEAK1 Missense_Mutation p.N48S 0.11 tolerated(0.09) benign(0.027) TCGA-DJ-A2PW-01 16 21716582 21716582 A G OTOA Missense_Mutation p.H358R 0.12 tolerated(0.78) benign(0.005) TCGA-DJ-A2PW-01 17 58740817 58740818 CT - PPM1D Frame_Shift_Del p.S575Cfs*2 0.28 TCGA-DJ-A2PW-01 19 37368055 37368055 A T ZNF345 Missense_Mutation p.H108L 0.21 deleterious(0) probably_damaging(0.991) TCGA-DJ-A2PW-01 19 49713617 49713617 C T TRPM4 Nonsense_Mutation p.R1095* 0.12 TCGA-DJ-A2PW-01 1 144598580 144598580 G A RP11-640M9.2 RNA 0.25 TCGA-DJ-A2PW-01 1 38465013 38465013 G A FHL3 Silent p.S24S 0.12 TCGA-DJ-A2PW-01 22 40719206 40719206 A T TNRC6B Silent p.L1821L 0.09 TCGA-DJ-A2PW-01 3 3887996 3887996 G A LRRN1 Silent p.S557S 0.16 TCGA-DJ-A2PW-01 3 40573621 40573621 C G ZNF621 Missense_Mutation p.N120K 0.11 tolerated(0.26) benign(0.065) TCGA-DJ-A2PW-01 4 57301543 57301543 G A PPAT Missense_Mutation p.T34I 0.19 tolerated(0.31) benign(0.238) TCGA-DJ-A2PW-01 5 132200319 132200319 A G GDF9 5'UTR 0.14 TCGA-DJ-A2PW-01 6 137147485 137147485 G A PEX7 Missense_Mutation p.V73M 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-DJ-A2PW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PW-01 7 151859891 151859891 G A KMT2C Nonsense_Mutation p.Q3591* 0.08 TCGA-DJ-A2PW-01 8 113418891 113418891 C T CSMD3 Missense_Mutation p.G1891S 0.09 deleterious(0) probably_damaging(0.996) TCGA-DJ-A2PW-01 8 37693223 37693223 G A GPR124 Missense_Mutation p.R662H 0.10 tolerated(0.09) benign(0.055) TCGA-DJ-A2PW-01 8 42819533 42819533 C G HOOK3 Missense_Mutation p.S232C 0.50 deleterious(0) probably_damaging(0.997) TCGA-DJ-A2PX-01 11 92258019 92258019 A G FAT3 Missense_Mutation p.Q1171R 0.06 probably_damaging(0.928) TCGA-DJ-A2PX-01 15 74630341 74630341 G A CYP11A1 Missense_Mutation p.P513L 0.29 deleterious(0.02) probably_damaging(0.984) TCGA-DJ-A2PX-01 2 17698454 17698454 C T RAD51AP2 Missense_Mutation p.C410Y 0.21 tolerated(0.56) benign(0.004) TCGA-DJ-A2PX-01 7 92821645 92821645 C A HEPACAM2 Missense_Mutation p.C436F 0.22 tolerated(0.72) benign(0) TCGA-DJ-A2PY-01 10 15655757 15655757 C A ITGA8 Silent p.P485P 0.32 TCGA-DJ-A2PY-01 11 2154186 2154186 G A IGF2 3'UTR 0.29 TCGA-DJ-A2PY-01 17 2224836 2224836 G T SRR Missense_Mutation p.V174F 0.39 tolerated(0.06) possibly_damaging(0.702) TCGA-DJ-A2PY-01 19 36276206 36276224 GGGGGCACCCGTGCCCCAC - ARHGAP33 Frame_Shift_Del p.G613Rfs*13 0.28 TCGA-DJ-A2PY-01 1 247267585 247267585 C T ZNF669 5'UTR 0.44 TCGA-DJ-A2PY-01 1 9804008 9804008 G A CLSTN1 Silent p.L430L 0.05 TCGA-DJ-A2PY-01 22 42482290 42482293 TTAA - NDUFA6 Frame_Shift_Del p.I120Kfs*44 0.44 TCGA-DJ-A2PY-01 22 50882692 50882692 G C PPP6R2 3'UTR 0.44 TCGA-DJ-A2PY-01 2 157352615 157352615 T G AC011308.1 Silent p.G8G 0.09 TCGA-DJ-A2PY-01 4 79517010 79517010 G A ANXA3 Silent p.L201L 0.10 TCGA-DJ-A2PY-01 6 134495197 134495197 C T SGK1 Silent p.L153L 0.27 TCGA-DJ-A2PY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PY-01 8 133895156 133895156 G T TG Missense_Mutation p.Q329H 0.07 deleterious(0) probably_damaging(1) TCGA-DJ-A2PY-01 8 2046799 2046799 C T MYOM2 Missense_Mutation p.T809I 0.14 deleterious(0) probably_damaging(0.987) TCGA-DJ-A2PY-01 9 130672244 130672244 G A ST6GALNAC4 Silent p.S235S 0.48 TCGA-DJ-A2PZ-01 11 115102104 115102104 G C CADM1 Missense_Mutation p.I177M 0.05 deleterious(0.01) probably_damaging(0.947) TCGA-DJ-A2PZ-01 11 125479386 125479386 A C STT3A Missense_Mutation p.K340T 0.28 deleterious(0.03) probably_damaging(0.925) TCGA-DJ-A2PZ-01 13 113768272 113768272 C T F7 Missense_Mutation p.T143M 0.21 tolerated(0.17) possibly_damaging(0.507) TCGA-DJ-A2PZ-01 13 31725226 31725226 C A HSPH1 Missense_Mutation p.A256S 0.34 deleterious(0.01) benign(0.111) TCGA-DJ-A2PZ-01 13 53217421 53217421 A G HNRNPA1L2 Missense_Mutation p.N265S 0.33 tolerated(0.23) unknown(0) TCGA-DJ-A2PZ-01 14 64560157 64560157 C A SYNE2 Missense_Mutation p.H4023N 0.04 benign(0.234) TCGA-DJ-A2PZ-01 16 24581020 24581021 - AC RBBP6 Frame_Shift_Ins p.K1004Tfs*33 0.27 TCGA-DJ-A2PZ-01 19 36637183 36637183 C A CAPNS1 Silent p.I230I 0.40 TCGA-DJ-A2PZ-01 19 40364079 40364079 G A FCGBP Missense_Mutation p.R4855C 0.38 probably_damaging(0.917) TCGA-DJ-A2PZ-01 1 149858710 149858710 G - HIST2H2AC Frame_Shift_Del p.I63Sfs*32 0.29 TCGA-DJ-A2PZ-01 1 155838393 155838393 C T SYT11 Silent p.D224D 0.30 TCGA-DJ-A2PZ-01 1 42620417 42620417 C A GUCA2B Missense_Mutation p.P53T 0.30 tolerated(0.37) benign(0.033) TCGA-DJ-A2PZ-01 20 46262900 46262900 A G NCOA3 Missense_Mutation p.N358S 0.24 tolerated(0.07) probably_damaging(0.998) TCGA-DJ-A2PZ-01 3 186299235 186299235 A G DNAJB11 Missense_Mutation p.T178A 0.34 tolerated(0.07) benign(0.15) TCGA-DJ-A2PZ-01 6 135314952 135314952 T C HBS1L Missense_Mutation p.M343V 0.11 deleterious(0) probably_damaging(0.925) TCGA-DJ-A2PZ-01 6 34985386 34985386 C T ANKS1A Silent p.L520L 0.16 TCGA-DJ-A2PZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2PZ-01 7 40027812 40027812 C T CDK13 Missense_Mutation p.P609L 0.32 tolerated(0.1) probably_damaging(0.998) TCGA-DJ-A2Q0-01 10 123843326 123843327 - GGATCA TACC2 In_Frame_Ins p.G438_S439dup 0.38 TCGA-DJ-A2Q0-01 10 99968514 99968514 G T R3HCC1L Nonsense_Mutation p.E215* 0.50 TCGA-DJ-A2Q0-01 11 6422860 6422860 G A APBB1 Missense_Mutation p.R481C 0.08 deleterious(0) possibly_damaging(0.644) TCGA-DJ-A2Q0-01 11 65267849 65267852 ATTA - MALAT1 RNA 0.23 TCGA-DJ-A2Q0-01 11 85977149 85977149 A G EED Missense_Mutation p.I251V 0.05 tolerated(0.06) benign(0.123) TCGA-DJ-A2Q0-01 12 50367285 50367285 G A AQP6 Missense_Mutation p.G110E 0.18 deleterious(0) probably_damaging(0.991) TCGA-DJ-A2Q0-01 14 44973729 44973729 C T FSCB Missense_Mutation p.R821H 0.07 tolerated_low_confidence(0.17) unknown(0) TCGA-DJ-A2Q0-01 15 44581275 44581275 C T CASC4 Silent p.L16L 0.41 TCGA-DJ-A2Q0-01 16 55886942 55886942 T A CES5A Splice_Site p.X405_splice 0.06 TCGA-DJ-A2Q0-01 16 71768593 71768593 G C AP1G1 Silent p.L765L 0.04 TCGA-DJ-A2Q0-01 17 72926756 72926756 C A OTOP2 Silent p.V342V 0.21 TCGA-DJ-A2Q0-01 17 80544992 80544992 C T FOXK2 Missense_Mutation p.R544W 0.35 deleterious(0) probably_damaging(0.997) TCGA-DJ-A2Q0-01 18 11752905 11752905 G A GNAL Missense_Mutation p.V144I 0.38 tolerated(0.5) probably_damaging(0.962) TCGA-DJ-A2Q0-01 19 3590056 3590056 G A GIPC3 Silent p.T269T 0.38 TCGA-DJ-A2Q0-01 19 41594528 41594528 C G CYP2A13 Missense_Mutation p.T51R 0.08 tolerated(0.52) probably_damaging(0.999) TCGA-DJ-A2Q0-01 1 220198558 220198558 C G EPRS Missense_Mutation p.Q222H 0.06 deleterious(0) probably_damaging(0.954) TCGA-DJ-A2Q0-01 1 237758830 237758830 C A RYR2 Missense_Mutation p.A1490E 0.20 possibly_damaging(0.87) TCGA-DJ-A2Q0-01 1 248845498 248845498 C T OR14I1 Silent p.V36V 0.24 TCGA-DJ-A2Q0-01 1 6291980 6291980 G T ICMT Nonsense_Mutation p.Y218* 0.20 TCGA-DJ-A2Q0-01 20 29960791 29960791 C T DEFB118 Nonsense_Mutation p.R64* 0.08 TCGA-DJ-A2Q0-01 20 60887079 60887079 G C LAMA5 Missense_Mutation p.Q3178E 0.27 benign(0.19) TCGA-DJ-A2Q0-01 20 61162163 61162163 G A C20orf166 Intron 0.17 TCGA-DJ-A2Q0-01 2 128477839 128477839 G C WDR33 Missense_Mutation p.P587R 0.04 deleterious_low_confidence(0.01) unknown(0) TCGA-DJ-A2Q0-01 3 164906055 164906055 C T SLITRK3 Missense_Mutation p.G855E 0.40 deleterious_low_confidence(0.01) benign(0.443) TCGA-DJ-A2Q0-01 3 21478657 21478657 T C ZNF385D Missense_Mutation p.T160A 0.16 tolerated(0.72) benign(0.002) TCGA-DJ-A2Q0-01 3 52485804 52485804 C G TNNC1 Silent p.G91G 0.04 TCGA-DJ-A2Q0-01 4 40776343 40776343 A G NSUN7 Missense_Mutation p.I184V 0.04 deleterious(0.04) possibly_damaging(0.562) TCGA-DJ-A2Q0-01 5 147051354 147051354 G A JAKMIP2 Nonsense_Mutation p.R6* 0.18 TCGA-DJ-A2Q0-01 6 52129524 52129524 G A MCM3 Silent p.I808I 0.35 TCGA-DJ-A2Q0-01 7 105190850 105190850 G A RINT1 Missense_Mutation p.G417D 0.05 tolerated(0.16) benign(0.019) TCGA-DJ-A2Q0-01 7 121668634 121668634 T G PTPRZ1 Missense_Mutation p.L1673V 0.08 tolerated(0.28) benign(0.298) TCGA-DJ-A2Q0-01 8 131848585 131848585 C A ADCY8 Silent p.L871L 0.50 TCGA-DJ-A2Q0-01 X 12885601 12885601 T G TLR7 Intron 0.22 TCGA-DJ-A2Q0-01 X 130217771 130217771 G A ARHGAP36 Missense_Mutation p.R128H 0.19 deleterious(0) possibly_damaging(0.849) TCGA-DJ-A2Q1-01 14 34931373 34931373 G C SPTSSA Missense_Mutation p.S14C 0.26 tolerated(0.1) probably_damaging(0.999) TCGA-DJ-A2Q1-01 15 75501019 75501019 C T C15orf39 Missense_Mutation p.T877M 0.19 deleterious(0) probably_damaging(0.999) TCGA-DJ-A2Q1-01 16 90162146 90162146 T C TUBB8P7 RNA 0.24 TCGA-DJ-A2Q1-01 17 40948252 40948252 G A WNK4 Missense_Mutation p.M1181I 0.29 tolerated(0.16) possibly_damaging(0.647) TCGA-DJ-A2Q1-01 17 40948253 40948253 C G WNK4 Missense_Mutation p.L1182V 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-DJ-A2Q1-01 17 74639759 74639759 C G ST6GALNAC1 5'UTR 0.31 TCGA-DJ-A2Q1-01 17 81042863 81042863 C T METRNL Missense_Mutation p.R74C 0.07 deleterious(0) probably_damaging(1) TCGA-DJ-A2Q1-01 19 7810588 7810588 C G CD209 Missense_Mutation p.K188N 0.10 deleterious(0.01) possibly_damaging(0.788) TCGA-DJ-A2Q1-01 2 230664036 230664036 G T TRIP12 Nonsense_Mutation p.Y1015* 0.18 TCGA-DJ-A2Q1-01 3 142278216 142278216 A G ATR Silent p.L537L 0.35 TCGA-DJ-A2Q1-01 7 95442507 95442507 G A DYNC1I1 Splice_Site p.X75_splice 0.32 TCGA-DJ-A2Q1-01 8 133687762 133687762 C T LRRC6 5'UTR 0.15 TCGA-DJ-A2Q2-01 11 55659141 55659141 C T TRIM51 3'UTR 0.25 TCGA-DJ-A2Q2-01 14 56139949 56139949 A G KTN1 Silent p.V1249V 0.12 TCGA-DJ-A2Q2-01 17 40836233 40836233 C T CNTNAP1 Nonsense_Mutation p.R117* 0.11 TCGA-DJ-A2Q2-01 1 116932301 116932301 T G ATP1A1 Missense_Mutation p.V332G 0.33 deleterious(0) probably_damaging(1) TCGA-DJ-A2Q2-01 2 119915192 119915192 G A C1QL2 Silent p.S218S 0.24 TCGA-DJ-A2Q2-01 2 25470535 25470535 C T DNMT3A Nonsense_Mutation p.W313* 0.09 TCGA-DJ-A2Q2-01 3 42448781 42448781 C A LYZL4 5'UTR 0.14 TCGA-DJ-A2Q2-01 4 42964970 42964970 T C GRXCR1 Missense_Mutation p.V149A 0.05 deleterious(0) probably_damaging(0.996) TCGA-DJ-A2Q2-01 5 11098687 11098687 C T CTNND2 Silent p.K879K 0.06 TCGA-DJ-A2Q2-01 5 80508237 80508237 G A RASGRF2 Missense_Mutation p.R1070H 0.25 deleterious(0) probably_damaging(1) TCGA-DJ-A2Q2-01 7 141736032 141736032 C T MGAM Nonsense_Mutation p.Q675* 0.19 TCGA-DJ-A2Q2-01 X 23411839 23411839 A T PTCHD1 Missense_Mutation p.E735V 0.06 deleterious(0.03) probably_damaging(0.939) TCGA-DJ-A2Q3-01 12 32778653 32778653 A T FGD4 Missense_Mutation p.K567N 0.14 deleterious(0.03) probably_damaging(0.917) TCGA-DJ-A2Q3-01 12 6659951 6659951 G A IFFO1 Silent p.A280A 0.18 TCGA-DJ-A2Q3-01 17 60837359 60837359 A C MARCH10 Missense_Mutation p.S73R 0.19 tolerated(0.08) benign(0.223) TCGA-DJ-A2Q3-01 18 11753670 11753670 G A GNAL Missense_Mutation p.D165N 0.43 deleterious(0.01) probably_damaging(0.914) TCGA-DJ-A2Q3-01 19 18701721 18701721 C T C19orf60 Missense_Mutation p.R171W 0.21 deleterious(0) possibly_damaging(0.784) TCGA-DJ-A2Q3-01 19 4446104 4446104 G A UBXN6 Missense_Mutation p.A381V 0.18 deleterious(0.04) benign(0.17) TCGA-DJ-A2Q3-01 19 49671841 49671841 G A TRPM4 Missense_Mutation p.G215D 0.22 tolerated(1) benign(0.193) TCGA-DJ-A2Q3-01 19 5111518 5111518 C G KDM4B Intron 0.08 TCGA-DJ-A2Q3-01 1 119474357 119474357 G C TBX15 5'UTR 0.21 TCGA-DJ-A2Q3-01 1 157504590 157504590 C A FCRL5 Missense_Mutation p.G499C 0.21 deleterious(0) probably_damaging(1) TCGA-DJ-A2Q3-01 20 42271199 42271199 C - IFT52 Frame_Shift_Del p.Q401Rfs*20 0.17 TCGA-DJ-A2Q3-01 22 39448806 39448806 G A APOBEC3F 3'UTR 0.15 TCGA-DJ-A2Q3-01 2 179419249 179419249 G A TTN Nonsense_Mutation p.R29609* 0.28 TCGA-DJ-A2Q3-01 2 242680473 242680473 A G D2HGDH Silent p.P106P 0.15 TCGA-DJ-A2Q3-01 2 47403612 47403612 G C CALM2 5'UTR 0.20 TCGA-DJ-A2Q3-01 3 132319255 132319255 A C ACKR4 Missense_Mutation p.Q5P 0.42 tolerated(0.34) benign(0.055) TCGA-DJ-A2Q3-01 5 145895152 145895152 A T GPR151 Missense_Mutation p.F175L 0.24 deleterious(0) probably_damaging(0.999) TCGA-DJ-A2Q3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2Q3-01 8 19231046 19231046 A G SH2D4A Missense_Mutation p.Q308R 0.09 tolerated(0.17) benign(0.015) TCGA-DJ-A2Q3-01 9 35399705 35399705 C G UNC13B Missense_Mutation p.D1356E 0.07 tolerated(0.87) benign(0.02) TCGA-DJ-A2Q3-01 9 86590355 86590355 G C HNRNPK Intron 0.22 TCGA-DJ-A2Q4-01 11 5776224 5776224 G A OR52N4 Missense_Mutation p.C85Y 0.43 tolerated(0.06) benign(0.058) TCGA-DJ-A2Q4-01 11 66082772 66082772 C A CD248 Missense_Mutation p.R576I 0.41 tolerated(0.08) possibly_damaging(0.467) TCGA-DJ-A2Q4-01 11 9161345 9161345 T C DENND5A Missense_Mutation p.H1246R 0.36 tolerated(1) benign(0) TCGA-DJ-A2Q4-01 12 7651554 7651554 C T CD163 Missense_Mutation p.G230R 0.06 deleterious(0.02) probably_damaging(1) TCGA-DJ-A2Q4-01 16 21170720 21170720 G A DNAH3 Missense_Mutation p.P15S 0.39 deleterious_low_confidence(0) benign(0) TCGA-DJ-A2Q4-01 16 56782202 56782202 C T NUP93 Nonsense_Mutation p.Q15* 0.31 TCGA-DJ-A2Q4-01 1 15863305 15863305 A T DNAJC16 Missense_Mutation p.E190D 0.40 tolerated(0.17) benign(0) TCGA-DJ-A2Q4-01 1 84376919 84376919 T C TTLL7 Missense_Mutation p.N572S 0.15 tolerated(0.4) benign(0.001) TCGA-DJ-A2Q4-01 5 24537754 24537754 T A CDH10 Silent p.G87G 0.30 TCGA-DJ-A2Q4-01 7 131870080 131870080 C G PLXNA4 Missense_Mutation p.E1046Q 0.05 deleterious(0.01) probably_damaging(0.968) TCGA-DJ-A2Q4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2Q4-01 8 99441073 99441073 A G KCNS2 Missense_Mutation p.N289S 0.07 deleterious(0.02) probably_damaging(0.989) TCGA-DJ-A2Q4-01 9 139371685 139371685 A C SEC16A Missense_Mutation p.L128W 0.41 deleterious(0.04) probably_damaging(0.928) TCGA-DJ-A2Q4-01 9 32573066 32573066 C T NDUFB6 5'UTR 0.15 TCGA-DJ-A2Q5-01 12 26818947 26818947 C T ITPR2 Missense_Mutation p.V483I 0.27 tolerated(0.13) probably_damaging(0.973) TCGA-DJ-A2Q5-01 17 41582066 41582066 A G DHX8 Missense_Mutation p.D534G 0.03 deleterious(0.03) benign(0.008) TCGA-DJ-A2Q5-01 3 196857455 196857455 C T DLG1 Missense_Mutation p.A403T 0.08 deleterious(0.01) probably_damaging(1) TCGA-DJ-A2Q5-01 5 135583307 135583307 C A TRPC7 Missense_Mutation p.G566W 0.04 deleterious(0) probably_damaging(1) TCGA-DJ-A2Q5-01 7 117431643 117431643 C T CTTNBP2 Missense_Mutation p.R536Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-DJ-A2Q5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.15 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2Q5-01 7 94183835 94183835 C T CASD1 Missense_Mutation p.A692V 0.06 tolerated(1) benign(0.015) TCGA-DJ-A2Q6-01 10 96701709 96701709 T C CYP2C9 Missense_Mutation p.I88T 0.08 deleterious(0.02) benign(0.435) TCGA-DJ-A2Q6-01 11 123811251 123811251 G T OR4D5 Missense_Mutation p.G310C 0.34 deleterious(0) benign(0.417) TCGA-DJ-A2Q6-01 20 46313295 46313295 C T SULF2 Silent p.P256P 0.08 TCGA-DJ-A2Q6-01 2 185802431 185802431 C T ZNF804A Nonsense_Mutation p.R770* 0.19 TCGA-DJ-A2Q6-01 5 10414577 10414577 A G MARCH6 Silent p.T643T 0.04 TCGA-DJ-A2Q6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2Q6-01 9 97084601 97084601 G A NUTM2F Nonsense_Mutation p.R242* 0.08 TCGA-DJ-A2Q7-01 11 55927551 55927551 C T OR8K5 Silent p.V81V 0.06 TCGA-DJ-A2Q7-01 14 20612492 20612492 G T OR4N5 Missense_Mutation p.V200F 0.08 tolerated(0.2) probably_damaging(0.968) TCGA-DJ-A2Q7-01 15 65678310 65678310 T G IGDCC4 Silent p.P1013P 0.29 TCGA-DJ-A2Q7-01 16 72984519 72984519 C T ZFHX3 Missense_Mutation p.G1022D 0.06 probably_damaging(0.999) TCGA-DJ-A2Q7-01 17 10295952 10295952 A T MYH8 Silent p.L1825L 0.04 TCGA-DJ-A2Q7-01 19 6213134 6213134 G A MLLT1 Silent p.T533T 0.32 TCGA-DJ-A2Q7-01 1 109544904 109544904 C G WDR47 Missense_Mutation p.V467L 0.07 tolerated(0.15) benign(0.171) TCGA-DJ-A2Q7-01 1 161641233 161641233 T C FCGR2B Missense_Mutation p.L62P 0.43 deleterious(0) probably_damaging(0.999) TCGA-DJ-A2Q7-01 1 220971259 220971259 C T MARC1 Missense_Mutation p.A219V 0.05 deleterious(0) probably_damaging(0.994) TCGA-DJ-A2Q7-01 1 33236588 33236588 C G KIAA1522 Missense_Mutation p.A603G 0.08 tolerated(0.05) unknown(0) TCGA-DJ-A2Q7-01 1 62676947 62676947 G T L1TD1 Missense_Mutation p.R834M 0.11 deleterious(0.01) probably_damaging(0.96) TCGA-DJ-A2Q7-01 5 71495163 71495163 C T MAP1B Missense_Mutation p.S1994F 0.04 possibly_damaging(0.762) TCGA-DJ-A2Q7-01 5 88047813 88047813 G C MEF2C Silent p.S168S 0.32 TCGA-DJ-A2Q7-01 6 32015637 32015637 G A TNXB 5'Flank 0.09 TCGA-DJ-A2Q7-01 6 43027939 43027939 G A KLC4 5'UTR 0.14 TCGA-DJ-A2Q7-01 6 96651640 96651640 C G FUT9 Silent p.V203V 0.32 TCGA-DJ-A2Q7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2Q7-01 8 53092728 53092728 C T ST18 Silent p.R77R 0.17 TCGA-DJ-A2Q7-01 9 125681791 125681791 T C ZBTB26 Silent p.P141P 0.15 TCGA-DJ-A2Q7-01 X 106844382 106844382 C T FRMPD3 Missense_Mutation p.T1071I 0.37 tolerated_low_confidence(0.22) benign(0.021) TCGA-DJ-A2Q8-01 11 47369997 47369997 G A MYBPC3 Silent p.S250S 0.27 TCGA-DJ-A2Q8-01 12 11034830 11034830 T A PRH1 3'UTR 0.04 TCGA-DJ-A2Q8-01 16 3828107 3828107 A T CREBBP Nonsense_Mutation p.L673* 0.05 TCGA-DJ-A2Q8-01 1 158623172 158623172 G A SPTA1 Missense_Mutation p.P1027L 0.07 deleterious(0) probably_damaging(0.969) TCGA-DJ-A2Q8-01 1 27216477 27216477 G A GPN2 Silent p.G37G 0.18 TCGA-DJ-A2Q8-01 1 32266210 32266210 G A SPOCD1 Silent p.S478S 0.17 TCGA-DJ-A2Q8-01 5 80626733 80626733 G A ACOT12 Missense_Mutation p.S473L 0.43 deleterious(0) probably_damaging(0.968) TCGA-DJ-A2Q8-01 6 30547740 30547740 G T ABCF1 Missense_Mutation p.K174N 0.10 tolerated_low_confidence(0.06) benign(0.241) TCGA-DJ-A2Q8-01 8 42586923 42586923 C T CHRNB3 Missense_Mutation p.T158M 0.35 deleterious(0) probably_damaging(0.992) TCGA-DJ-A2Q8-01 9 35065309 35065309 G A VCP Missense_Mutation p.P172L 0.29 tolerated(0.16) benign(0.385) TCGA-DJ-A2Q9-01 10 129905423 129905423 T C MKI67 Missense_Mutation p.K1561E 0.08 deleterious(0.05) benign(0.388) TCGA-DJ-A2Q9-01 10 35930194 35930194 T C FZD8 Missense_Mutation p.N55S 0.08 deleterious(0) unknown(0) TCGA-DJ-A2Q9-01 10 76868831 76868831 G A DUSP13 Missense_Mutation p.R29W 0.07 deleterious(0.03) possibly_damaging(0.802) TCGA-DJ-A2Q9-01 11 68181159 68181159 C T LRP5 Nonsense_Mutation p.Q836* 0.07 TCGA-DJ-A2Q9-01 17 74878302 74878302 G A MGAT5B Missense_Mutation p.R95H 0.24 deleterious(0) probably_damaging(1) TCGA-DJ-A2Q9-01 1 248685767 248685767 G T OR2G6 Missense_Mutation p.V274F 0.11 tolerated(0.07) benign(0.082) TCGA-DJ-A2Q9-01 2 100903492 100903492 G C LONRF2 Missense_Mutation p.L652V 0.08 deleterious(0) probably_damaging(0.998) TCGA-DJ-A2Q9-01 2 220162111 220162111 C G PTPRN Silent p.R644R 0.09 TCGA-DJ-A2Q9-01 2 225739448 225739448 T C DOCK10 Missense_Mutation p.T318A 0.08 tolerated(0.18) benign(0) TCGA-DJ-A2Q9-01 2 74656958 74656958 A G RTKN Missense_Mutation p.V251A 0.08 tolerated(0.22) possibly_damaging(0.585) TCGA-DJ-A2Q9-01 3 138374244 138374244 T A PIK3CB Missense_Mutation p.D1067V 0.07 deleterious(0) probably_damaging(0.992) TCGA-DJ-A2Q9-01 3 167245799 167245799 A G WDR49 Missense_Mutation p.C453R 0.15 deleterious(0) possibly_damaging(0.871) TCGA-DJ-A2Q9-01 4 53492228 53492228 T C USP46 Missense_Mutation p.Q173R 0.05 deleterious(0.05) benign(0.033) TCGA-DJ-A2Q9-01 4 77700311 77700311 C T SHROOM3 Missense_Mutation p.T1991I 0.07 deleterious_low_confidence(0.01) benign(0.398) TCGA-DJ-A2Q9-01 5 77452176 77452176 T A AP3B1 Missense_Mutation p.E460V 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-DJ-A2Q9-01 5 77452177 77452177 C T AP3B1 Missense_Mutation p.E460K 0.08 deleterious(0) probably_damaging(0.928) TCGA-DJ-A2Q9-01 9 104071536 104071536 C T LPPR1 Silent p.N143N 0.11 TCGA-DJ-A2Q9-01 X 74293735 74293735 G T ABCB7 Nonsense_Mutation p.Y305* 0.06 TCGA-DJ-A2QA-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.28 TCGA-DJ-A2QA-01 13 33315257 33315257 G A PDS5B Missense_Mutation p.E816K 0.24 tolerated(0.07) benign(0.041) TCGA-DJ-A2QA-01 17 45367119 45367119 G A ITGB3 Missense_Mutation p.E338K 0.37 tolerated(1) benign(0.002) TCGA-DJ-A2QA-01 17 56283864 56283864 G A MKS1 Silent p.G484G 0.05 TCGA-DJ-A2QA-01 19 12989328 12989328 C T DNASE2 Missense_Mutation p.E193K 0.25 tolerated(1) benign(0.002) TCGA-DJ-A2QA-01 19 55966378 55966378 G A ISOC2 Missense_Mutation p.A188V 0.05 deleterious(0.01) probably_damaging(0.925) TCGA-DJ-A2QA-01 1 155927538 155927538 T C ARHGEF2 Missense_Mutation p.T561A 0.08 deleterious(0.03) probably_damaging(0.998) TCGA-DJ-A2QA-01 1 159683396 159683396 G A CRP Silent p.F198F 0.23 TCGA-DJ-A2QA-01 1 16054611 16054611 G A PLEKHM2 Missense_Mutation p.V600M 0.25 deleterious(0) probably_damaging(0.983) TCGA-DJ-A2QA-01 2 121050797 121050797 G A RALB Silent p.K194K 0.12 TCGA-DJ-A2QA-01 5 40681232 40681232 G A PTGER4 Missense_Mutation p.R46H 0.05 deleterious(0) probably_damaging(0.987) TCGA-DJ-A2QA-01 6 41738433 41738433 T C FRS3 Missense_Mutation p.N468S 0.05 tolerated(1) benign(0.001) TCGA-DJ-A2QA-01 7 102978155 102978155 G C DNAJC2 Intron 0.28 TCGA-DJ-A2QA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2QA-01 7 151864343 151864343 G A KMT2C Missense_Mutation p.S3213L 0.26 probably_damaging(0.998) TCGA-DJ-A2QB-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.26 tolerated(0.07) benign(0.069) TCGA-DJ-A2QB-01 12 7520684 7520684 T A CD163L1 Missense_Mutation p.R1394S 0.28 tolerated(0.26) benign(0.001) TCGA-DJ-A2QB-01 19 2351493 2351493 C A LLfos-48D6.1 3'Flank 0.09 TCGA-DJ-A2QB-01 1 205128809 205128809 T G DSTYK Splice_Site p.X702_splice 0.26 TCGA-DJ-A2QB-01 1 228469644 228469644 G C OBSCN Silent p.V3165V 0.12 TCGA-DJ-A2QB-01 1 51439634 51439634 G A CDKN2C Missense_Mutation p.D67N 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-DJ-A2QB-01 22 50727260 50727260 G C PLXNB2 Missense_Mutation p.S431C 0.38 deleterious(0.01) possibly_damaging(0.894) TCGA-DJ-A2QB-01 3 42730518 42730518 G A KLHL40 Missense_Mutation p.A527T 0.09 tolerated(0.17) benign(0.005) TCGA-DJ-A2QB-01 5 145524092 145524092 T C LARS Missense_Mutation p.D533G 0.34 deleterious(0.01) possibly_damaging(0.864) TCGA-DJ-A2QB-01 5 175921248 175921248 C - FAF2 Frame_Shift_Del p.S212Lfs*24 0.26 TCGA-DJ-A2QB-01 7 142606711 142606711 G A TRPV5 Missense_Mutation p.P614S 0.26 tolerated(0.08) possibly_damaging(0.751) TCGA-DJ-A2QB-01 9 112899269 112899269 A G PALM2-AKAP2 Missense_Mutation p.E482G 0.14 deleterious(0) probably_damaging(0.999) TCGA-DJ-A2QB-01 X 18926165 18926172 GCTGGGAC - PHKA2 Frame_Shift_Del p.G788Vfs*19 0.20 TCGA-DJ-A2QC-01 10 118969513 118969513 T G KCNK18 Missense_Mutation p.I286M 0.08 tolerated(0.33) possibly_damaging(0.591) TCGA-DJ-A2QC-01 14 20345045 20345045 G T OR4K2 Missense_Mutation p.A207S 0.03 tolerated(1) probably_damaging(0.974) TCGA-DJ-A2QC-01 16 89352008 89352008 G C ANKRD11 Silent p.V314V 0.05 TCGA-DJ-A2QC-01 17 39593660 39593660 G A KRT38 3'UTR 0.19 TCGA-DJ-A2QC-01 19 13991282 13991282 C T NANOS3 Missense_Mutation p.P182S 0.06 deleterious_low_confidence(0.03) unknown(0) TCGA-DJ-A2QC-01 1 212964938 212964938 G A NSL1 Silent p.F56F 0.06 TCGA-DJ-A2QC-01 22 22055423 22055423 C T YPEL1 Missense_Mutation p.E119K 0.08 deleterious_low_confidence(0) benign(0.006) TCGA-DJ-A2QC-01 22 36055153 36055153 C T APOL6 Missense_Mutation p.A181V 0.04 tolerated(0.54) benign(0.004) TCGA-DJ-A2QC-01 5 1219168 1219168 C T SLC6A19 Missense_Mutation p.P442S 0.08 tolerated(0.11) probably_damaging(1) TCGA-DJ-A2QC-01 6 31901656 31901656 A C CFB Missense_Mutation p.Y148S 0.45 deleterious(0.01) benign(0.072) TCGA-DJ-A2QC-01 7 100454533 100454533 C T SLC12A9 Silent p.Y164Y 0.33 TCGA-DJ-A2QC-01 7 100606299 100606299 C G MUC3A Silent p.T605T 0.25 TCGA-DJ-A2QC-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-DJ-A2QC-01 8 145948217 145948217 G A ZNF251 Silent p.L276L 0.09 TCGA-DJ-A2QC-01 8 25340935 25340935 T G CDCA2 Nonsense_Mutation p.Y351* 0.08 TCGA-DJ-A3UK-01 10 43869919 43869919 C G FXYD4 Silent p.G13G 0.36 TCGA-DJ-A3UK-01 11 76751195 76751195 G A B3GNT6 Silent p.K200K 0.47 TCGA-DJ-A3UK-01 12 123214145 123214145 G A HCAR1 Missense_Mutation p.P248S 0.05 tolerated(0.73) benign(0.039) TCGA-DJ-A3UK-01 17 18232139 18232139 C T SHMT1 Silent p.A459A 0.06 TCGA-DJ-A3UK-01 17 34074068 34074068 G A GAS2L2 Missense_Mutation p.T351M 0.09 tolerated(0.19) benign(0.002) TCGA-DJ-A3UK-01 3 100473513 100473513 T G ABI3BP Missense_Mutation p.K914Q 0.14 deleterious(0.01) benign(0.209) TCGA-DJ-A3UK-01 4 80246702 80246702 G A NAA11 Silent p.H110H 0.26 TCGA-DJ-A3UK-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UM-01 17 76134248 76134248 C - TMC8 Frame_Shift_Del p.L505Sfs*11 0.09 TCGA-DJ-A3UM-01 19 56244558 56244558 G A NLRP9 Silent p.I213I 0.12 TCGA-DJ-A3UM-01 2 220073614 220073614 G A ZFAND2B Intron 0.06 TCGA-DJ-A3UM-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UM-01 X 153590835 153590835 G A FLNA Missense_Mutation p.T839M 0.12 tolerated(0.19) benign(0.259) TCGA-DJ-A3UN-01 11 67267884 67267884 G C PITPNM1 Missense_Mutation p.R217G 0.35 deleterious(0.02) benign(0.012) TCGA-DJ-A3UN-01 14 36789689 36789689 A C MBIP Missense_Mutation p.S36A 0.43 tolerated(0.5) benign(0.06) TCGA-DJ-A3UN-01 16 767142 767142 G A METRN Missense_Mutation p.A213T 0.08 tolerated(0.77) benign(0.016) TCGA-DJ-A3UN-01 17 1264494 1264494 T A YWHAE Missense_Mutation p.D157V 0.03 deleterious_low_confidence(0.05) benign(0.32) TCGA-DJ-A3UN-01 17 27024968 27024968 C T SUPT6H Silent p.T1456T 0.30 TCGA-DJ-A3UN-01 17 76178724 76178724 G T TK1 Missense_Mutation p.D83E 0.50 tolerated(0.27) benign(0.022) TCGA-DJ-A3UN-01 19 39897531 39897531 C T ZFP36 Missense_Mutation p.A2V 0.26 deleterious_low_confidence(0) benign(0.189) TCGA-DJ-A3UN-01 19 48917682 48917682 G C GRIN2D Missense_Mutation p.R418P 0.21 deleterious(0) probably_damaging(0.968) TCGA-DJ-A3UN-01 1 33985468 33985468 C A CSMD2 Silent p.L3416L 0.41 TCGA-DJ-A3UN-01 21 42748992 42748992 G - MX2 Frame_Shift_Del p.K54Rfs*15 0.29 TCGA-DJ-A3UN-01 2 128466403 128466403 G C WDR33 Missense_Mutation p.S1210C 0.32 deleterious_low_confidence(0) possibly_damaging(0.869) TCGA-DJ-A3UN-01 2 1795581 1795581 G A MYT1L 3'UTR 0.05 TCGA-DJ-A3UN-01 2 69597225 69597225 C T GFPT1 Missense_Mutation p.G44E 0.39 deleterious(0.02) benign(0.445) TCGA-DJ-A3UN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UN-01 7 150389724 150389724 G A GIMAP2 Missense_Mutation p.R117H 0.05 deleterious(0.04) possibly_damaging(0.879) TCGA-DJ-A3UN-01 7 19156404 19156404 C A TWIST1 Nonsense_Mutation p.E181* 0.36 TCGA-DJ-A3UN-01 8 17092255 17092255 C G CNOT7 Missense_Mutation p.K196N 0.29 deleterious(0) probably_damaging(1) TCGA-DJ-A3UN-01 8 26722176 26722176 G A ADRA1A Missense_Mutation p.A104V 0.36 deleterious(0) probably_damaging(1) TCGA-DJ-A3UN-01 9 93629413 93629413 A G SYK Missense_Mutation p.T283A 0.04 tolerated(0.38) benign(0) TCGA-DJ-A3UO-01 11 114569205 114569205 C G NXPE2 Missense_Mutation p.L191V 0.06 tolerated(0.71) benign(0.019) TCGA-DJ-A3UO-01 12 5154100 5154100 T G KCNA5 Missense_Mutation p.S263A 0.12 deleterious(0) probably_damaging(0.986) TCGA-DJ-A3UO-01 16 3339612 3339612 C T ZNF263 Missense_Mutation p.P369L 0.46 deleterious(0.01) benign(0.057) TCGA-DJ-A3UO-01 17 3324444 3324444 C A OR3A3 Missense_Mutation p.Q195K 0.36 tolerated(0.81) benign(0.004) TCGA-DJ-A3UO-01 17 8273458 8273458 C A KRBA2 Missense_Mutation p.R158L 0.15 tolerated(0.86) benign(0.268) TCGA-DJ-A3UO-01 19 56155926 56155926 C T ZNF581 5'UTR 0.14 TCGA-DJ-A3UO-01 2 219503377 219503377 G C ZNF142 Missense_Mutation p.H1583Q 0.29 deleterious(0) benign(0.024) TCGA-DJ-A3UO-01 2 233348844 233348844 G A ECEL1 Missense_Mutation p.A425V 0.38 tolerated(0.14) benign(0.174) TCGA-DJ-A3UO-01 3 130292898 130292898 G A COL6A6 Missense_Mutation p.V1026I 0.50 tolerated(0.48) benign(0.036) TCGA-DJ-A3UO-01 4 185012454 185012454 G A ENPP6 Missense_Mutation p.P400L 0.29 deleterious(0) possibly_damaging(0.864) TCGA-DJ-A3UO-01 6 110746110 110746110 G C SLC22A16 Missense_Mutation p.A567G 0.39 deleterious(0.01) benign(0.118) TCGA-DJ-A3UO-01 6 147830172 147830172 C A SAMD5 Silent p.I36I 0.14 TCGA-DJ-A3UO-01 6 33272093 33272093 C T TAPBP Silent p.E397E 0.38 TCGA-DJ-A3UO-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UP-01 11 10789616 10789620 TATAG - CTR9 Splice_Site p.X625_splice 0.29 TCGA-DJ-A3UP-01 12 4873152 4873152 A T GALNT8 Missense_Mutation p.D511V 0.07 deleterious(0) probably_damaging(0.945) TCGA-DJ-A3UP-01 13 72147128 72147128 A C DACH1 Missense_Mutation p.F383L 0.51 probably_damaging(0.971) TCGA-DJ-A3UP-01 16 68100529 68100529 G A DUS2 Missense_Mutation p.V182I 0.03 tolerated(0.19) possibly_damaging(0.735) TCGA-DJ-A3UP-01 19 50180555 50180555 C G PRMT1 Silent p.A6A 0.35 TCGA-DJ-A3UP-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.39 tolerated(0.06) benign(0.006) TCGA-DJ-A3UP-01 1 31349713 31349713 C T SDC3 Missense_Mutation p.A186T 0.39 tolerated(1) unknown(0) TCGA-DJ-A3UP-01 22 16287731 16287731 G A POTEH Missense_Mutation p.S52F 0.08 deleterious_low_confidence(0) unknown(0) TCGA-DJ-A3UP-01 2 160240182 160240182 G A BAZ2B Silent p.D1232D 0.45 TCGA-DJ-A3UP-01 4 23833344 23833344 G T PPARGC1A Missense_Mutation p.L89I 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-DJ-A3UP-01 4 23833345 23833345 C G PPARGC1A Missense_Mutation p.L88F 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-DJ-A3UP-01 4 62452952 62452952 C T LPHN3 Silent p.S21S 0.22 TCGA-DJ-A3UP-01 4 675823 675823 C T MFSD7 Missense_Mutation p.G535D 0.08 tolerated_low_confidence(0.26) benign(0.006) TCGA-DJ-A3UP-01 7 158935229 158935229 G A VIPR2 Silent p.S20S 0.06 TCGA-DJ-A3UQ-01 11 60886790 60886790 G A CD5 Missense_Mutation p.G183D 0.05 deleterious(0) probably_damaging(0.999) TCGA-DJ-A3UQ-01 17 67515461 67515461 G C MAP2K6 Missense_Mutation p.R85P 0.25 tolerated(0.08) benign(0.126) TCGA-DJ-A3UQ-01 19 15514819 15514819 G A AKAP8L Splice_Site p.X41_splice 0.06 TCGA-DJ-A3UQ-01 19 16910932 16910932 T C NWD1 Missense_Mutation p.I1232T 0.28 tolerated(0.69) benign(0.002) TCGA-DJ-A3UQ-01 19 52272349 52272349 C T FPR2 Silent p.I146I 0.14 TCGA-DJ-A3UQ-01 1 244582071 244582071 C T ADSS Silent p.E312E 0.05 TCGA-DJ-A3UQ-01 5 145719616 145719616 G A POU4F3 Missense_Mutation p.G209D 0.08 deleterious(0) probably_damaging(1) TCGA-DJ-A3UQ-01 6 169639743 169639743 G A THBS2 Silent p.C360C 0.12 TCGA-DJ-A3UQ-01 6 50683317 50683317 C A TFAP2D Missense_Mutation p.D176E 0.07 tolerated(0.73) benign(0.035) TCGA-DJ-A3UQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UQ-01 X 49854982 49854982 G A CLCN5 Missense_Mutation p.A652T 0.24 deleterious(0.01) benign(0.087) TCGA-DJ-A3UR-01 15 79056079 79056079 G T ADAMTS7 Missense_Mutation p.H1568N 0.08 deleterious(0.01) possibly_damaging(0.805) TCGA-DJ-A3UR-01 1 175325475 175325475 A T TNR Missense_Mutation p.I1033N 0.15 deleterious(0) possibly_damaging(0.571) TCGA-DJ-A3UR-01 20 57429071 57429071 G C GNAS Missense_Mutation p.G251R 0.47 deleterious_low_confidence(0.02) unknown(0) TCGA-DJ-A3UR-01 21 37603387 37603387 G A DOPEY2 Missense_Mutation p.E769K 0.43 deleterious(0) benign(0.273) TCGA-DJ-A3UR-01 2 132235871 132235871 C T TUBA3D Silent p.D46D 0.40 TCGA-DJ-A3UR-01 4 85696234 85696235 - T WDFY3 Frame_Shift_Ins p.L1526Tfs*7 0.32 TCGA-DJ-A3UR-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UR-01 8 19252170 19252170 C A SH2D4A 3'UTR 0.06 TCGA-DJ-A3UR-01 X 11139095 11139095 G A HCCS Missense_Mutation p.R197Q 0.04 deleterious(0) possibly_damaging(0.658) TCGA-DJ-A3US-01 12 122687921 122687921 G A LRRC43 Missense_Mutation p.V635I 0.04 deleterious(0.01) probably_damaging(0.909) TCGA-DJ-A3US-01 13 100637890 100637890 G T ZIC2 Missense_Mutation p.G518V 0.25 tolerated_low_confidence(0.25) unknown(0) TCGA-DJ-A3US-01 17 72951961 72951961 G C HID1 Missense_Mutation p.S521C 0.29 deleterious(0) probably_damaging(0.992) TCGA-DJ-A3US-01 1 207317265 207317265 G A C4BPA Missense_Mutation p.G516D 0.17 tolerated(0.49) benign(0.043) TCGA-DJ-A3US-01 20 2380227 2380227 A T TGM6 Silent p.R231R 0.20 TCGA-DJ-A3US-01 21 31971024 31971024 C G KRTAP6-2 Missense_Mutation p.G57A 0.25 unknown(0) TCGA-DJ-A3US-01 4 144467147 144467147 G C SMARCA5 Missense_Mutation p.A823P 0.41 deleterious(0.02) probably_damaging(0.952) TCGA-DJ-A3US-01 9 130270798 130270798 T C FAM129B Missense_Mutation p.Y446C 0.06 deleterious(0.01) benign(0.105) TCGA-DJ-A3UT-01 17 40865386 40865386 T A EZH1 Missense_Mutation p.M349L 0.04 tolerated(0.3) benign(0.001) TCGA-DJ-A3UT-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.41 tolerated(0.06) benign(0.006) TCGA-DJ-A3UT-01 1 20412680 20412680 G C PLA2G5 Missense_Mutation p.G49R 0.06 deleterious(0) probably_damaging(1) TCGA-DJ-A3UT-01 1 20412681 20412681 G T PLA2G5 Missense_Mutation p.G49V 0.07 deleterious(0) probably_damaging(1) TCGA-DJ-A3UT-01 3 11684953 11684953 A C VGLL4 Missense_Mutation p.L14V 0.15 deleterious(0.01) probably_damaging(0.93) TCGA-DJ-A3UT-01 4 158142928 158142928 G C GRIA2 Missense_Mutation p.E66D 0.10 tolerated(0.9) benign(0) TCGA-DJ-A3UT-01 5 153026644 153026644 G A GRIA1 Missense_Mutation p.R136H 0.21 deleterious(0) probably_damaging(1) TCGA-DJ-A3UT-01 5 176468158 176468158 C T ZNF346 Silent p.L69L 0.13 TCGA-DJ-A3UT-01 6 128150695 128150695 G A THEMIS Missense_Mutation p.T212M 0.05 tolerated(0.24) benign(0.016) TCGA-DJ-A3UT-01 6 31964267 31964267 G A C4A Missense_Mutation p.G1189D 0.06 tolerated(0.26) benign(0.168) TCGA-DJ-A3UT-01 8 133899011 133899012 AG - TG Frame_Shift_Del p.R466Tfs*18 0.11 TCGA-DJ-A3UT-01 X 129546577 129546577 C T RBMX2 Silent p.L242L 0.07 TCGA-DJ-A3UT-01 X 77155051 77155051 A G COX7B Translation_Start_Site p.M1? 0.13 tolerated(0.05) benign(0.21) TCGA-DJ-A3UU-01 13 52602984 52602985 AG - UTP14C Frame_Shift_Del p.Q15Rfs*14 0.27 TCGA-DJ-A3UU-01 17 43923926 43923926 G A SPPL2C Missense_Mutation p.A552T 0.05 tolerated(0.65) benign(0.008) TCGA-DJ-A3UU-01 19 11470205 11470205 C T DKFZP761J1410 Intron 0.24 TCGA-DJ-A3UU-01 4 84015814 84015814 T - PLAC8 3'UTR 0.18 TCGA-DJ-A3UU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UU-01 8 42716925 42716925 T G RNF170 Missense_Mutation p.N157T 0.20 deleterious(0.03) benign(0.006) TCGA-DJ-A3UU-01 X 110952238 110952238 G A ALG13 Missense_Mutation p.V266I 0.57 tolerated(0.34) probably_damaging(0.994) TCGA-DJ-A3UU-01 X 19369470 19369470 C T PDHA1 Silent p.H159H 0.05 TCGA-DJ-A3UU-01 X 69502665 69502665 T C RAB41 Missense_Mutation p.I65T 0.03 deleterious(0.01) probably_damaging(0.93) TCGA-DJ-A3UV-01 10 100189379 100189379 G A HPS1 Silent p.L296L 0.22 TCGA-DJ-A3UV-01 10 100189563 100189563 C T HPS1 Silent p.G284G 0.16 TCGA-DJ-A3UV-01 10 43654238 43654238 G A CSGALNACT2 Missense_Mutation p.R246K 0.19 tolerated(0.46) possibly_damaging(0.657) TCGA-DJ-A3UV-01 10 94452181 94452181 G T HHEX Missense_Mutation p.G140C 0.26 deleterious(0) probably_damaging(0.999) TCGA-DJ-A3UV-01 12 120568522 120568522 G C GCN1L1 Silent p.G2533G 0.19 TCGA-DJ-A3UV-01 14 72055315 72055315 G A SIPA1L1 Silent p.K242K 0.10 TCGA-DJ-A3UV-01 14 81745005 81745005 T C STON2 Missense_Mutation p.N217S 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DJ-A3UV-01 16 57416149 57416149 C T CX3CL1 Silent p.G133G 0.24 TCGA-DJ-A3UV-01 19 19387413 19387413 C A SUGP1 3'UTR 0.27 TCGA-DJ-A3UV-01 4 5500727 5500727 G A STK32B Missense_Mutation p.G388R 0.05 tolerated(0.2) benign(0.194) TCGA-DJ-A3UV-01 8 142231689 142231689 G A SLC45A4 Silent p.N88N 0.07 TCGA-DJ-A3UW-01 11 34493006 34493006 G A CAT 3'UTR 0.24 TCGA-DJ-A3UW-01 12 26809335 26809335 C T ITPR2 Missense_Mutation p.R780H 0.14 tolerated(0.24) benign(0.048) TCGA-DJ-A3UW-01 15 45427465 45427465 G A DUOX1 Silent p.R157R 0.27 TCGA-DJ-A3UW-01 17 77755652 77755652 G A CBX2 Intron 0.06 TCGA-DJ-A3UW-01 19 18368263 18368263 G A KIAA1683 Silent p.G1277G 0.14 TCGA-DJ-A3UW-01 1 44482733 44482733 A G SLC6A9 Missense_Mutation p.S25P 0.05 tolerated_low_confidence(0.12) benign(0) TCGA-DJ-A3UW-01 2 241516021 241516021 C T RNPEPL1 Missense_Mutation p.S296F 0.16 deleterious(0.02) possibly_damaging(0.541) TCGA-DJ-A3UW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.19 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UX-01 10 103542065 103542065 C A NPM3 Missense_Mutation p.R123L 0.20 deleterious(0.02) possibly_damaging(0.733) TCGA-DJ-A3UX-01 12 104107531 104107531 G T STAB2 Missense_Mutation p.G1508C 0.17 deleterious(0) probably_damaging(1) TCGA-DJ-A3UX-01 16 66436665 66436665 G A CDH5 Missense_Mutation p.G650S 0.19 deleterious(0) probably_damaging(1) TCGA-DJ-A3UX-01 1 1120546 1120546 G A TTLL10 Intron 0.05 TCGA-DJ-A3UX-01 1 14925625 14925625 C T KAZN Silent p.G44G 0.09 TCGA-DJ-A3UX-01 3 142739532 142739532 T C U2SURP Missense_Mutation p.S244P 0.17 tolerated(0.17) possibly_damaging(0.536) TCGA-DJ-A3UX-01 4 100350697 100350697 G A ADH7 Missense_Mutation p.R58C 0.19 deleterious(0.04) benign(0.043) TCGA-DJ-A3UX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.18 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UX-01 8 71581381 71581381 G A LACTB2 5'UTR 0.23 TCGA-DJ-A3UY-01 15 43678506 43678506 G A TUBGCP4 Missense_Mutation p.R331H 0.23 tolerated(0.15) benign(0.007) TCGA-DJ-A3UY-01 1 226108103 226108103 G A PYCR2 3'UTR 0.32 TCGA-DJ-A3UY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3UZ-01 11 64954692 64954692 A G CAPN1 Missense_Mutation p.S256G 0.13 deleterious(0.03) benign(0.003) TCGA-DJ-A3UZ-01 5 137878559 137878559 T A ETF1 Missense_Mutation p.I17F 0.09 deleterious(0) probably_damaging(0.951) TCGA-DJ-A3UZ-01 7 8062180 8062180 G A GLCCI1 Missense_Mutation p.S226N 0.17 deleterious(0) probably_damaging(0.943) TCGA-DJ-A3V0-01 10 126683040 126683040 G T CTBP2 Missense_Mutation p.Q800K 0.09 tolerated(0.07) benign(0.013) TCGA-DJ-A3V0-01 10 69366808 69366808 C A CTNNA3 Splice_Site p.X34_splice 0.36 TCGA-DJ-A3V0-01 11 581503 581503 A G PHRF1 5'UTR 0.53 TCGA-DJ-A3V0-01 12 49427459 49427459 G A KMT2D Silent p.L3677L 0.32 TCGA-DJ-A3V0-01 12 69279639 69279639 C T CPM Missense_Mutation p.R64Q 0.38 tolerated(0.55) benign(0.015) TCGA-DJ-A3V0-01 16 4462417 4462417 C T CORO7 Missense_Mutation p.V58M 0.05 deleterious(0.02) benign(0.11) TCGA-DJ-A3V0-01 17 76457692 76457692 G C DNAH17 Silent p.A3077A 0.39 TCGA-DJ-A3V0-01 18 61379924 61379924 T A SERPINB11 Missense_Mutation p.H118Q 0.42 tolerated(0.3) benign(0.008) TCGA-DJ-A3V0-01 19 41822618 41822618 G A CCDC97 Missense_Mutation p.V126M 0.11 deleterious(0.04) benign(0.166) TCGA-DJ-A3V0-01 1 145586928 145586928 C T NUDT17 Missense_Mutation p.A254T 0.34 tolerated(0.52) benign(0.002) TCGA-DJ-A3V0-01 22 38945974 38945974 G T DMC1 Silent p.G150G 0.38 TCGA-DJ-A3V0-01 2 141773335 141773335 T C LRP1B Missense_Mutation p.N707S 0.09 benign(0) TCGA-DJ-A3V0-01 2 97427918 97427918 C - CNNM4 Frame_Shift_Del p.F394Lfs*7 0.24 TCGA-DJ-A3V0-01 2 97808552 97808552 A G ANKRD36 Missense_Mutation p.D294G 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.857) TCGA-DJ-A3V0-01 3 197616452 197616452 C G IQCG Nonstop_Mutation p.*444Sext*21 0.10 TCGA-DJ-A3V0-01 3 48697526 48697526 T A CELSR3 Missense_Mutation p.I848F 0.05 deleterious(0) probably_damaging(1) TCGA-DJ-A3V0-01 6 110935828 110935828 T C CDK19 Silent p.G473G 0.33 TCGA-DJ-A3V0-01 6 152415668 152415668 G A ESR1 Silent p.Q506Q 0.20 TCGA-DJ-A3V0-01 6 32122382 32122382 T G PPT2 Missense_Mutation p.L10R 0.37 deleterious_low_confidence(0) benign(0.066) TCGA-DJ-A3V0-01 6 32134984 32134984 T C EGFL8 Missense_Mutation p.M184T 0.34 tolerated(0.67) benign(0) TCGA-DJ-A3V0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3V0-01 8 41792173 41792173 T A KAT6A Missense_Mutation p.I1189F 0.30 benign(0.197) TCGA-DJ-A3V0-01 9 140247218 140247218 C A EXD3 Silent p.P297P 0.40 TCGA-DJ-A3V0-01 9 35752094 35752103 TCCCTCCCAA - RGP1 Frame_Shift_Del p.P304Sfs*14 0.39 TCGA-DJ-A3V0-01 9 732623 732623 G A KANK1 Intron 0.40 TCGA-DJ-A3V2-01 10 17373483 17373483 C T ST8SIA6 Missense_Mutation p.G149E 0.10 deleterious(0) probably_damaging(1) TCGA-DJ-A3V2-01 19 15533868 15533868 G A WIZ 3'UTR 0.21 TCGA-DJ-A3V2-01 4 55573316 55573316 C T KIT Silent p.N326N 0.35 TCGA-DJ-A3V2-01 5 5235247 5235247 C A ADAMTS16 Missense_Mutation p.S657R 0.08 tolerated(0.15) benign(0.046) TCGA-DJ-A3V2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3V3-01 11 430386 430386 T A ANO9 Missense_Mutation p.K186M 0.12 deleterious(0) probably_damaging(0.965) TCGA-DJ-A3V3-01 14 105518396 105518396 C T GPR132 Silent p.L26L 0.33 TCGA-DJ-A3V3-01 15 58476192 58476192 T A AQP9 Missense_Mutation p.V249E 0.44 deleterious(0) possibly_damaging(0.882) TCGA-DJ-A3V3-01 1 153931000 153931000 C G CRTC2 5'UTR 0.41 TCGA-DJ-A3V3-01 1 66058449 66058449 A G LEPR Missense_Mutation p.T202A 0.40 tolerated(0.64) benign(0.002) TCGA-DJ-A3V3-01 7 102257150 102257150 C T RASA4 5'UTR 0.19 TCGA-DJ-A3V3-01 7 76071156 76071156 C T ZP3 Intron 0.25 TCGA-DJ-A3V3-01 8 144940525 144940525 C A EPPK1 Missense_Mutation p.K2299N 0.07 probably_damaging(0.997) TCGA-DJ-A3V3-01 9 125330357 125330357 C T OR1L8 Missense_Mutation p.V134I 0.22 tolerated(0.22) benign(0.005) TCGA-DJ-A3V4-01 10 82280237 82280237 C G TSPAN14 3'UTR 0.14 TCGA-DJ-A3V4-01 11 624864 624864 G T CDHR5 Missense_Mutation p.F13L 0.36 tolerated_low_confidence(0.88) benign(0) TCGA-DJ-A3V4-01 14 104169529 104169529 A T XRCC3 Missense_Mutation p.I181N 0.44 deleterious(0) probably_damaging(0.954) TCGA-DJ-A3V4-01 14 96788936 96788936 G C ATG2B Missense_Mutation p.L893V 0.20 deleterious(0.01) probably_damaging(0.931) TCGA-DJ-A3V4-01 19 51960834 51960834 C T SIGLEC8 Missense_Mutation p.R205H 0.28 tolerated(0.56) benign(0.001) TCGA-DJ-A3V4-01 19 9057069 9057069 G A MUC16 Missense_Mutation p.P10126L 0.09 benign(0) TCGA-DJ-A3V4-01 1 27623608 27623608 G C WDTC1 Missense_Mutation p.S339T 0.14 tolerated(0.49) benign(0.007) TCGA-DJ-A3V4-01 1 52874249 52874249 G A PRPF38A Missense_Mutation p.R100H 0.04 deleterious(0) probably_damaging(0.993) TCGA-DJ-A3V4-01 20 1629760 1629760 C T SIRPG Missense_Mutation p.R123Q 0.04 tolerated(1) benign(0.012) TCGA-DJ-A3V4-01 20 3052891 3052891 C T OXT Missense_Mutation p.R97C 0.33 deleterious(0) probably_damaging(0.927) TCGA-DJ-A3V4-01 20 57767395 57767395 G T ZNF831 Missense_Mutation p.D441Y 0.10 deleterious(0) probably_damaging(1) TCGA-DJ-A3V4-01 22 40712010 40712010 C G TNRC6B Silent p.T1656T 0.16 TCGA-DJ-A3V4-01 2 128380909 128380909 G T MYO7B Missense_Mutation p.D1234Y 0.19 deleterious(0) probably_damaging(1) TCGA-DJ-A3V4-01 4 70865527 70865527 G A STATH Splice_Site p.X34_splice 0.37 TCGA-DJ-A3V4-01 6 47681877 47681877 G T GPR115 Missense_Mutation p.G299V 0.43 deleterious(0) probably_damaging(1) TCGA-DJ-A3V4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3V5-01 10 16824045 16824045 T G RSU1 Missense_Mutation p.N50H 0.43 deleterious(0) probably_damaging(0.975) TCGA-DJ-A3V5-01 11 40136666 40136666 C A LRRC4C Missense_Mutation p.V393F 0.33 deleterious(0.03) benign(0.203) TCGA-DJ-A3V5-01 12 56346638 56346638 A G DGKA Missense_Mutation p.I622V 0.23 tolerated(0.53) benign(0.001) TCGA-DJ-A3V5-01 12 56814908 56814908 G A TIMELESS Missense_Mutation p.A960V 0.27 tolerated(0.26) benign(0.004) TCGA-DJ-A3V5-01 12 58159094 58159094 T C CYP27B1 Missense_Mutation p.K192R 0.30 tolerated(0.56) benign(0.256) TCGA-DJ-A3V5-01 12 91445123 91445123 T A KERA Nonstop_Mutation p.*353Yext*7 0.14 TCGA-DJ-A3V5-01 13 41704557 41704557 C T KBTBD6 3'UTR 0.20 TCGA-DJ-A3V5-01 15 89856163 89856163 G A FANCI Missense_Mutation p.G1227E 0.10 tolerated(0.25) benign(0.043) TCGA-DJ-A3V5-01 16 84531595 84531595 G A TLDC1 Missense_Mutation p.S33L 0.19 deleterious(0.05) benign(0.03) TCGA-DJ-A3V5-01 17 900397 900397 C A TIMM22 Silent p.A5A 0.42 TCGA-DJ-A3V5-01 18 9887434 9887434 G A TXNDC2 Missense_Mutation p.E320K 0.26 tolerated(0.57) possibly_damaging(0.621) TCGA-DJ-A3V5-01 1 57476376 57476376 C T DAB1 Missense_Mutation p.G554S 0.29 deleterious_low_confidence(0.02) benign(0.03) TCGA-DJ-A3V5-01 3 151475454 151475454 G A AADACL2 3'UTR 0.23 TCGA-DJ-A3V5-01 3 43759228 43759228 G A ABHD5 Missense_Mutation p.R280Q 0.06 deleterious(0) probably_damaging(0.993) TCGA-DJ-A3V5-01 4 74364929 74364929 C T AFM Missense_Mutation p.T463M 0.36 tolerated(0.13) possibly_damaging(0.593) TCGA-DJ-A3V5-01 4 79301030 79301030 A G FRAS1 Missense_Mutation p.N1148S 0.38 benign(0.082) TCGA-DJ-A3V5-01 5 110819825 110819825 A C CAMK4 Silent p.P361P 0.17 TCGA-DJ-A3V5-01 5 149210402 149210402 C T PPARGC1B Missense_Mutation p.R180C 0.06 tolerated(0.1) benign(0.064) TCGA-DJ-A3V5-01 6 29054783 29054783 C T OR2B3 Missense_Mutation p.M81I 0.33 deleterious(0.01) benign(0.005) TCGA-DJ-A3V5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3V5-01 8 614552 614552 C T ERICH1 3'UTR 0.14 TCGA-DJ-A3V5-01 X 38169958 38169958 C T RPGR Missense_Mutation p.G230S 0.38 benign(0.055) TCGA-DJ-A3V6-01 10 111860594 111860594 C T ADD3 Silent p.I61I 0.13 TCGA-DJ-A3V6-01 11 4903279 4903279 C T OR51T1 Silent p.V77V 0.29 TCGA-DJ-A3V6-01 11 59620331 59620331 G A TCN1 3'UTR 0.08 TCGA-DJ-A3V6-01 11 82611440 82611440 C T PRCP Missense_Mutation p.G2D 0.23 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-DJ-A3V6-01 12 5021754 5021754 G A KCNA1 Missense_Mutation p.V404I 0.37 deleterious(0) probably_damaging(0.989) TCGA-DJ-A3V6-01 14 23345043 23345043 C T LRP10 Missense_Mutation p.R296C 0.25 deleterious(0) probably_damaging(0.987) TCGA-DJ-A3V6-01 18 59854569 59854569 C G KIAA1468 5'UTR 0.35 TCGA-DJ-A3V6-01 19 14674833 14674833 C G TECR Missense_Mutation p.L103V 0.11 deleterious(0.02) possibly_damaging(0.76) TCGA-DJ-A3V6-01 19 38877231 38877231 G A GGN Missense_Mutation p.A224V 0.09 tolerated_low_confidence(0.09) unknown(0) TCGA-DJ-A3V6-01 19 50823987 50823987 G A KCNC3 Missense_Mutation p.P678L 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.713) TCGA-DJ-A3V6-01 1 91403245 91403245 C A ZNF644 Missense_Mutation p.S1162I 0.07 tolerated(0.19) benign(0.1) TCGA-DJ-A3V6-01 2 73161196 73161196 G A EMX1 3'UTR 0.33 TCGA-DJ-A3V6-01 2 74803681 74803681 G A M1AP Silent p.D278D 0.18 TCGA-DJ-A3V6-01 3 138191501 138191501 C T ESYT3 Silent p.I679I 0.27 TCGA-DJ-A3V6-01 3 145914466 145914466 G A PLSCR4 Missense_Mutation p.R247C 0.37 tolerated(0.08) possibly_damaging(0.863) TCGA-DJ-A3V6-01 4 88534400 88534400 C T DSPP Silent p.R354R 0.41 TCGA-DJ-A3V6-01 5 141244422 141244422 G A PCDH1 Missense_Mutation p.L492F 0.13 deleterious(0.01) probably_damaging(1) TCGA-DJ-A3V6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3V6-01 7 50530960 50530960 G A DDC Missense_Mutation p.A471V 0.15 deleterious(0.01) benign(0.165) TCGA-DJ-A3V6-01 8 145007232 145007232 T A PLEC Missense_Mutation p.N626I 0.45 unknown(0) TCGA-DJ-A3V6-01 9 123210305 123210305 G A CDK5RAP2 Nonsense_Mutation p.Q965* 0.08 TCGA-DJ-A3V6-01 9 34650487 34650487 A G GALT 3'UTR 0.33 TCGA-DJ-A3V6-01 9 90113926 90113926 G T DAPK1 5'UTR 0.14 TCGA-DJ-A3V7-01 11 68542876 68542876 G A CPT1A Nonsense_Mutation p.Q495* 0.38 TCGA-DJ-A3V7-01 13 49039407 49039407 C T RB1 Missense_Mutation p.R798W 0.12 deleterious(0) probably_damaging(0.996) TCGA-DJ-A3V7-01 15 44028683 44028683 C A RNU6-354P 5'Flank 0.31 TCGA-DJ-A3V7-01 16 2880459 2880459 C T ZG16B Missense_Mutation p.T42M 0.58 deleterious(0) probably_damaging(0.997) TCGA-DJ-A3V7-01 17 40704977 40704977 C G HSD17B1 Missense_Mutation p.T9S 0.06 tolerated(0.07) probably_damaging(1) TCGA-DJ-A3V7-01 17 73870808 73870808 G A TRIM47 Missense_Mutation p.A558V 0.36 tolerated(0.27) possibly_damaging(0.672) TCGA-DJ-A3V7-01 17 79207838 79207838 C G ENTHD2 Silent p.G106G 0.11 TCGA-DJ-A3V7-01 19 11040151 11040151 G T C19orf52 Missense_Mutation p.D186Y 0.07 deleterious(0.01) possibly_damaging(0.907) TCGA-DJ-A3V7-01 19 11143966 11143966 G C SMARCA4 Missense_Mutation p.D1183H 0.05 probably_damaging(1) TCGA-DJ-A3V7-01 19 36640755 36640755 A C CAPNS1 3'UTR 0.10 TCGA-DJ-A3V7-01 19 57326078 57326078 C A PEG3 Missense_Mutation p.M1244I 0.11 deleterious(0.05) benign(0.403) TCGA-DJ-A3V7-01 19 8131054 8131054 G A FBN3 Missense_Mutation p.R2727W 0.15 deleterious(0.03) possibly_damaging(0.776) TCGA-DJ-A3V7-01 19 9090068 9090068 C G MUC16 Missense_Mutation p.E583Q 0.06 unknown(0) TCGA-DJ-A3V7-01 1 12251959 12251959 G T TNFRSF1B Missense_Mutation p.G146C 0.08 deleterious(0) probably_damaging(1) TCGA-DJ-A3V7-01 1 201868633 201868633 G A LMOD1 Missense_Mutation p.A503V 0.10 benign(0.184) TCGA-DJ-A3V7-01 1 248813300 248813300 C T OR2T27 Missense_Mutation p.D296N 0.05 deleterious(0.03) possibly_damaging(0.839) TCGA-DJ-A3V7-01 21 34123457 34123457 C T PAXBP1 Missense_Mutation p.R527H 0.22 deleterious(0.05) probably_damaging(0.987) TCGA-DJ-A3V7-01 3 123345699 123345699 C T MYLK Missense_Mutation p.R1735Q 0.11 deleterious(0) benign(0.098) TCGA-DJ-A3V7-01 3 151127118 151127118 C T MED12L Nonsense_Mutation p.Q1935* 0.06 TCGA-DJ-A3V7-01 3 27326389 27326389 G T NEK10 Missense_Mutation p.S618Y 0.04 deleterious(0.03) probably_damaging(0.978) TCGA-DJ-A3V7-01 3 58395861 58395861 G A PXK Silent p.A480A 0.45 TCGA-DJ-A3V7-01 4 140375591 140375591 G A RAB33B Missense_Mutation p.R81H 0.08 tolerated(0.09) benign(0.043) TCGA-DJ-A3V7-01 4 187000075 187000075 G C TLR3 Missense_Mutation p.E175Q 0.44 tolerated(0.16) benign(0.095) TCGA-DJ-A3V7-01 4 890299 890299 T C GAK Silent p.E230E 0.15 TCGA-DJ-A3V7-01 5 118506611 118506611 G T DMXL1 Missense_Mutation p.R2042L 0.48 deleterious(0) probably_damaging(0.999) TCGA-DJ-A3V7-01 5 140531054 140531054 G A PCDHB6 Missense_Mutation p.A406T 0.08 tolerated(0.12) benign(0.014) TCGA-DJ-A3V7-01 6 41621214 41621214 G T MDFI Silent p.L214L 0.05 TCGA-DJ-A3V7-01 7 117180367 117180367 G C CFTR Missense_Mutation p.W361C 0.05 deleterious(0.02) benign(0.042) TCGA-DJ-A3V7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3V7-01 8 1497669 1497669 G C DLGAP2 Missense_Mutation p.K270N 0.05 deleterious(0.01) probably_damaging(0.999) TCGA-DJ-A3V7-01 8 37702487 37702487 G A BRF2 Missense_Mutation p.P261S 0.08 tolerated(0.13) possibly_damaging(0.54) TCGA-DJ-A3V7-01 9 131133623 131133623 G A URM1 5'UTR 0.22 TCGA-DJ-A3V7-01 9 99017173 99017173 A G HSD17B3 Missense_Mutation p.L85P 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-DJ-A3V7-01 X 138633271 138633271 C A F9 Missense_Mutation p.R191S 0.09 tolerated(0.12) probably_damaging(0.999) TCGA-DJ-A3V7-01 X 152225805 152225805 G A PNMA3 Silent p.S131S 0.22 TCGA-DJ-A3V8-01 10 14923614 14923614 G A SUV39H2 Silent p.V49V 0.29 TCGA-DJ-A3V8-01 12 113835178 113835178 C T SDS Missense_Mutation p.V149M 0.31 deleterious(0) possibly_damaging(0.747) TCGA-DJ-A3V8-01 14 52188751 52188751 A G FRMD6 Missense_Mutation p.Y482C 0.07 tolerated(0.12) benign(0) TCGA-DJ-A3V8-01 15 41862822 41862822 G A TYRO3 Missense_Mutation p.D502N 0.11 tolerated(0.1) benign(0.048) TCGA-DJ-A3V8-01 16 87446746 87446746 G C ZCCHC14 Silent p.S416S 0.18 TCGA-DJ-A3V8-01 19 44590377 44590377 A T ZNF284 Missense_Mutation p.H249L 0.06 deleterious(0) probably_damaging(1) TCGA-DJ-A3V8-01 2 196746684 196746684 T C DNAH7 Silent p.K1932K 0.29 TCGA-DJ-A3V8-01 2 85554340 85554340 G A TGOLN2 Missense_Mutation p.A172V 0.07 tolerated(0.26) probably_damaging(0.972) TCGA-DJ-A3V8-01 4 40434683 40434683 C T RBM47 Silent p.T509T 0.05 TCGA-DJ-A3V8-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3V8-01 7 150554897 150554897 G A AOC1 Missense_Mutation p.G447S 0.10 tolerated(0.12) probably_damaging(0.963) TCGA-DJ-A3V8-01 7 53103868 53103868 G T POM121L12 Missense_Mutation p.E168D 0.36 tolerated(0.09) possibly_damaging(0.801) TCGA-DJ-A3V8-01 8 94747845 94747845 C T RBM12B Missense_Mutation p.R265Q 0.36 tolerated(0.06) benign(0.44) TCGA-DJ-A3V9-01 10 99160855 99160855 G A RRP12 Missense_Mutation p.P45L 0.24 tolerated(0.12) benign(0.063) TCGA-DJ-A3V9-01 15 99926292 99926292 T G LRRC28 Missense_Mutation p.F363L 0.04 deleterious(0.01) benign(0.021) TCGA-DJ-A3V9-01 18 34844686 34844686 G T CELF4 Missense_Mutation p.S400R 0.36 tolerated(0.05) possibly_damaging(0.649) TCGA-DJ-A3V9-01 19 7673068 7673068 G A CAMSAP3 Silent p.V253V 0.12 TCGA-DJ-A3V9-01 3 124210197 124210197 G A KALRN Missense_Mutation p.V1537M 0.17 deleterious(0.03) benign(0.31) TCGA-DJ-A3V9-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VA-01 10 123845778 123845778 G T TACC2 Missense_Mutation p.A1255S 0.27 possibly_damaging(0.757) TCGA-DJ-A3VA-01 15 43819231 43819231 C G MAP1A Missense_Mutation p.P1854A 0.08 probably_damaging(0.998) TCGA-DJ-A3VA-01 16 10912351 10912351 C A TVP23A 5'UTR 0.14 TCGA-DJ-A3VA-01 17 73499543 73499543 G A CASKIN2 Silent p.S582S 0.06 TCGA-DJ-A3VA-01 19 33666304 33666304 C T WDR88 Silent p.C415C 0.31 TCGA-DJ-A3VA-01 2 179659202 179659202 G T TTN Missense_Mutation p.P441Q 0.09 TCGA-DJ-A3VA-01 3 50311051 50311051 A T SEMA3B RNA 0.24 TCGA-DJ-A3VA-01 4 56428581 56428581 G T PDCL2 Silent p.L187L 0.39 TCGA-DJ-A3VA-01 5 71492992 71492992 C T MAP1B Silent p.T1270T 0.32 TCGA-DJ-A3VA-01 6 31599695 31599695 G A PRRC2A Missense_Mutation p.R1082H 0.12 unknown(0) TCGA-DJ-A3VA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VA-01 7 27856612 27856612 A T TAX1BP1 Silent p.R680R 0.12 TCGA-DJ-A3VA-01 7 98543388 98543388 G C TRRAP Missense_Mutation p.G1498R 0.36 benign(0.004) TCGA-DJ-A3VA-01 8 97243454 97243454 T C UQCRB Intron 0.09 TCGA-DJ-A3VA-01 9 104356700 104356700 G C PPP3R2 Silent p.L171L 0.08 TCGA-DJ-A3VB-01 12 119916995 119916995 C T CCDC60 Silent p.T146T 0.42 TCGA-DJ-A3VB-01 13 114324127 114324127 C T GRK1 Silent p.I275I 0.05 TCGA-DJ-A3VB-01 13 77763175 77763175 T C MYCBP2 Missense_Mutation p.T1350A 0.42 benign(0.031) TCGA-DJ-A3VB-01 16 20043241 20043241 C T GPR139 Missense_Mutation p.R293H 0.34 deleterious(0) probably_damaging(0.991) TCGA-DJ-A3VB-01 17 6913813 6913813 G T ALOX12 3'UTR 0.09 TCGA-DJ-A3VB-01 19 11565288 11565288 C T ELAVL3 3'UTR 0.20 TCGA-DJ-A3VB-01 19 17416585 17416585 G C MRPL34 5'UTR 0.33 TCGA-DJ-A3VB-01 19 45721473 45721473 C T EXOC3L2 Missense_Mutation p.M215I 0.36 tolerated(0.07) benign(0.186) TCGA-DJ-A3VB-01 1 74715180 74715180 C T FPGT-TNNI3K Missense_Mutation p.R177C 0.11 tolerated(0.05) benign(0.011) TCGA-DJ-A3VB-01 21 45971249 45971249 G A KRTAP10-2 Silent p.C31C 0.05 TCGA-DJ-A3VB-01 2 114355097 114355097 C T WASH2P RNA 0.27 TCGA-DJ-A3VB-01 2 190439928 190439928 G C SLC40A1 Missense_Mutation p.A77G 0.33 deleterious(0.02) probably_damaging(0.983) TCGA-DJ-A3VB-01 2 70315174 70315174 T A PCBP1 Missense_Mutation p.L100Q 0.04 deleterious(0.01) probably_damaging(0.964) TCGA-DJ-A3VB-01 4 3516526 3516526 C T LRPAP1 Missense_Mutation p.E322K 0.30 deleterious(0) probably_damaging(0.984) TCGA-DJ-A3VB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VB-01 7 141796143 141796143 C T MGAM Silent p.D1644D 0.13 TCGA-DJ-A3VB-01 8 48883923 48883923 A T MCM4 Missense_Mutation p.N608I 0.21 deleterious(0) probably_damaging(0.992) TCGA-DJ-A3VB-01 X 47918136 47918136 A G ZNF630 Silent p.H565H 0.20 TCGA-DJ-A3VD-01 12 56088657 56088657 G A ITGA7 Missense_Mutation p.P705S 0.18 deleterious(0.04) probably_damaging(0.973) TCGA-DJ-A3VD-01 1 155261654 155261654 C T PKLR Missense_Mutation p.R504H 0.17 deleterious(0.03) probably_damaging(1) TCGA-DJ-A3VD-01 22 31011296 31011296 G T TCN2 Missense_Mutation p.A197S 0.08 deleterious(0.01) probably_damaging(1) TCGA-DJ-A3VD-01 2 68520965 68520965 T A CNRIP1 3'UTR 0.14 TCGA-DJ-A3VD-01 5 65321737 65321737 A G ERBB2IP Missense_Mutation p.I318V 0.12 tolerated(0.19) benign(0.002) TCGA-DJ-A3VD-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.15 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VD-01 7 151933008 151933008 G A KMT2C Missense_Mutation p.S888F 0.09 probably_damaging(0.998) TCGA-DJ-A3VD-01 X 8434506 8434506 G A VCX3B 3'UTR 0.15 TCGA-DJ-A3VE-01 10 73587777 73587777 G A PSAP Silent p.A238A 0.07 TCGA-DJ-A3VE-01 11 48328468 48328468 C T OR4S1 Missense_Mutation p.R232C 0.03 tolerated(0.05) benign(0.012) TCGA-DJ-A3VE-01 18 61077535 61077535 G A VPS4B Missense_Mutation p.A95V 0.37 tolerated(0.27) benign(0.015) TCGA-DJ-A3VE-01 20 23349552 23349552 T C GZF1 Missense_Mutation p.I538T 0.13 tolerated(0.12) benign(0.155) TCGA-DJ-A3VE-01 22 36623751 36623751 G A APOL2 Missense_Mutation p.A238V 0.42 tolerated(0.07) possibly_damaging(0.508) TCGA-DJ-A3VE-01 3 154033843 154033843 G C DHX36 Missense_Mutation p.A118G 0.17 tolerated(0.2) benign(0.002) TCGA-DJ-A3VE-01 6 75884986 75884986 C T COL12A1 Silent p.T826T 0.10 TCGA-DJ-A3VE-01 6 7862663 7862663 G A BMP6 Missense_Mutation p.R379Q 0.06 tolerated(0.29) benign(0.082) TCGA-DJ-A3VE-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VE-01 8 124034940 124034940 A G DERL1 Missense_Mutation p.F146S 0.34 deleterious(0) probably_damaging(0.948) TCGA-DJ-A3VE-01 9 104238214 104238214 G A TMEM246 Silent p.H387H 0.17 TCGA-DJ-A3VE-01 9 130374691 130374691 C G STXBP1 Silent p.P3P 0.12 TCGA-DJ-A3VE-01 9 140777318 140777318 C T CACNA1B Silent p.F171F 0.07 TCGA-DJ-A3VF-01 12 106633705 106633705 G A CKAP4 Silent p.S302S 0.14 TCGA-DJ-A3VF-01 14 70634771 70634771 T A SLC8A3 Silent p.T123T 0.21 TCGA-DJ-A3VF-01 16 21272640 21272640 A T CRYM Missense_Mutation p.L272Q 0.21 deleterious(0) probably_damaging(0.988) TCGA-DJ-A3VF-01 17 27209047 27209047 C A FLOT2 Splice_Site p.X234_splice 0.08 TCGA-DJ-A3VF-01 22 19028788 19028788 G A DGCR2 Silent p.G393G 0.29 TCGA-DJ-A3VF-01 4 123664933 123664933 C G BBS12 Missense_Mutation p.S629C 0.21 tolerated(0.41) probably_damaging(0.968) TCGA-DJ-A3VF-01 6 76751735 76751735 C T IMPG1 Missense_Mutation p.R59Q 0.33 tolerated(0.14) benign(0.022) TCGA-DJ-A3VF-01 7 102574783 102574783 C G LRRC17 Missense_Mutation p.I141M 0.06 tolerated(0.1) benign(0.049) TCGA-DJ-A3VF-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VG-01 10 101464274 101464274 A G ENTPD7 Missense_Mutation p.N550S 0.08 deleterious(0.03) possibly_damaging(0.78) TCGA-DJ-A3VG-01 10 106058999 106058999 A G GSTO2 Missense_Mutation p.Y230C 0.25 deleterious(0) probably_damaging(1) TCGA-DJ-A3VG-01 11 18354672 18354672 A G GTF2H1 Silent p.Q17Q 0.10 TCGA-DJ-A3VG-01 11 55872565 55872565 T A OR8H2 Missense_Mutation p.M16K 0.12 tolerated(0.08) benign(0.001) TCGA-DJ-A3VG-01 19 11557156 11557156 G A PRKCSH Silent p.A251A 0.14 TCGA-DJ-A3VG-01 19 15166255 15166255 C T CASP14 Nonsense_Mutation p.R179* 0.35 TCGA-DJ-A3VG-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.45 tolerated(0.06) benign(0.006) TCGA-DJ-A3VG-01 1 205764534 205764534 C T SLC41A1 Missense_Mutation p.G382E 0.38 deleterious(0) possibly_damaging(0.825) TCGA-DJ-A3VG-01 1 37946000 37946000 G A ZC3H12A Missense_Mutation p.E185K 0.40 deleterious(0) probably_damaging(1) TCGA-DJ-A3VG-01 1 40539673 40539673 C A PPT1 3'UTR 0.42 TCGA-DJ-A3VG-01 20 2375994 2375994 C T TGM6 Silent p.Y112Y 0.41 TCGA-DJ-A3VG-01 20 472948 472948 G A CSNK2A1 Nonsense_Mutation p.R191* 0.33 TCGA-DJ-A3VG-01 2 89309919 89309919 G A IGKV1-9 Silent p.L12L 0.37 TCGA-DJ-A3VG-01 3 161217017 161217017 C A OTOL1 Silent p.P141P 0.10 TCGA-DJ-A3VG-01 5 33456283 33456283 G C TARS Missense_Mutation p.G296A 0.38 deleterious(0) probably_damaging(0.999) TCGA-DJ-A3VG-01 6 112466059 112466059 G T LAMA4 Missense_Mutation p.N810K 0.36 deleterious(0) probably_damaging(1) TCGA-DJ-A3VG-01 7 105516315 105516315 C T ATXN7L1 Missense_Mutation p.E65K 0.40 deleterious(0.01) probably_damaging(0.979) TCGA-DJ-A3VG-01 8 145664079 145664079 T A TONSL Missense_Mutation p.D507V 0.24 deleterious(0.04) possibly_damaging(0.649) TCGA-DJ-A3VG-01 9 33442253 33442253 C T AQP3 Intron 0.51 TCGA-DJ-A3VG-01 X 99657627 99657627 G C PCDH19 Missense_Mutation p.N837K 0.84 tolerated(0.21) benign(0.071) TCGA-DJ-A3VI-01 10 102748581 102748581 T G C10orf2 Missense_Mutation p.V205G 0.49 deleterious(0.01) probably_damaging(0.996) TCGA-DJ-A3VI-01 10 43619150 43619150 G A RET Missense_Mutation p.V945M 0.42 deleterious(0.01) possibly_damaging(0.775) TCGA-DJ-A3VI-01 11 102395783 102395783 G A MMP7 Missense_Mutation p.S166F 0.08 tolerated(1) benign(0.002) TCGA-DJ-A3VI-01 11 111941848 111941848 C G PIH1D2 Missense_Mutation p.R154T 0.09 tolerated(0.22) benign(0.005) TCGA-DJ-A3VI-01 11 113802568 113802568 C T HTR3B Missense_Mutation p.P116L 0.29 deleterious(0) probably_damaging(1) TCGA-DJ-A3VI-01 12 129569241 129569241 C G TMEM132D Missense_Mutation p.D484H 0.12 deleterious(0) probably_damaging(0.929) TCGA-DJ-A3VI-01 12 78594266 78594266 C T NAV3 Silent p.F2221F 0.51 TCGA-DJ-A3VI-01 12 8244414 8244414 C T NECAP1 Silent p.F117F 0.31 TCGA-DJ-A3VI-01 13 100635025 100635025 A G ZIC2 Missense_Mutation p.H236R 0.10 deleterious(0.04) benign(0.346) TCGA-DJ-A3VI-01 13 35864536 35864536 T A NBEA Nonsense_Mutation p.C1929* 0.43 TCGA-DJ-A3VI-01 14 50626379 50626379 G A SOS2 Missense_Mutation p.S541F 0.37 tolerated(0.08) probably_damaging(0.95) TCGA-DJ-A3VI-01 16 30106212 30106212 G A YPEL3 Silent p.N94N 0.44 TCGA-DJ-A3VI-01 1 175328868 175328868 C T TNR Splice_Site p.X952_splice 0.34 TCGA-DJ-A3VI-01 1 59922666 59922666 T C FGGY Silent p.Y196Y 0.11 TCGA-DJ-A3VI-01 20 50808137 50808137 C G ZFP64 Silent p.S13S 0.50 TCGA-DJ-A3VI-01 2 215896644 215896644 G A ABCA12 Intron 0.08 TCGA-DJ-A3VI-01 3 132229980 132229980 A G DNAJC13 Missense_Mutation p.M1729V 0.41 tolerated(0.37) benign(0.004) TCGA-DJ-A3VI-01 3 195453270 195453270 C G MUC20 Missense_Mutation p.P599R 0.25 tolerated(0.06) unknown(0) TCGA-DJ-A3VI-01 4 114824011 114824011 T C ARSJ Missense_Mutation p.I407V 0.06 deleterious(0.04) benign(0.075) TCGA-DJ-A3VI-01 7 128452273 128452273 G C CCDC136 Missense_Mutation p.K816N 0.07 deleterious(0) possibly_damaging(0.826) TCGA-DJ-A3VI-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VI-01 7 39379332 39379332 C A POU6F2 Silent p.T201T 0.42 TCGA-DJ-A3VI-01 8 110567042 110567042 C G EBAG9 Missense_Mutation p.Q83E 0.08 tolerated(0.16) benign(0.034) TCGA-DJ-A3VJ-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.23 deleterious(0) probably_damaging(0.999) TCGA-DJ-A3VJ-01 16 32890777 32890777 G T SLC6A10P RNA 0.26 TCGA-DJ-A3VJ-01 17 48190248 48190248 C T SAMD14 3'UTR 0.16 TCGA-DJ-A3VJ-01 17 65907817 65907817 A G BPTF Missense_Mutation p.M1273V 0.29 benign(0.002) TCGA-DJ-A3VJ-01 19 8436239 8436239 T A ANGPTL4 Missense_Mutation p.V291E 0.23 deleterious(0.01) possibly_damaging(0.756) TCGA-DJ-A3VJ-01 1 26527433 26527433 C T CATSPER4 Missense_Mutation p.S367L 0.26 tolerated(0.27) benign(0.009) TCGA-DJ-A3VJ-01 2 32694627 32694627 A T BIRC6 Missense_Mutation p.N2098Y 0.24 probably_damaging(0.996) TCGA-DJ-A3VJ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-DJ-A3VJ-01 9 72082820 72082820 G A APBA1 Silent p.G467G 0.30 TCGA-DJ-A3VK-01 10 31138963 31138963 T C ZNF438 Missense_Mutation p.Y124C 0.06 deleterious(0) benign(0.052) TCGA-DJ-A3VK-01 11 118455206 118455206 C T ARCN1 Missense_Mutation p.P222L 0.14 deleterious(0.04) benign(0.017) TCGA-DJ-A3VK-01 11 4703767 4703767 A G OR51E2 Missense_Mutation p.Y59H 0.07 deleterious(0) probably_damaging(0.998) TCGA-DJ-A3VK-01 11 76731450 76731450 C T ACER3 3'UTR 0.18 TCGA-DJ-A3VK-01 12 64587880 64587880 G A C12orf66 Silent p.H360H 0.07 TCGA-DJ-A3VK-01 14 35742769 35742769 A G KIAA0391 Silent p.T583T 0.09 TCGA-DJ-A3VK-01 14 94158128 94158128 G A UNC79 Missense_Mutation p.A2298T 0.09 deleterious(0.02) possibly_damaging(0.557) TCGA-DJ-A3VK-01 15 90785312 90785312 A G GDPGP1 3'UTR 0.22 TCGA-DJ-A3VK-01 16 50707544 50707544 G A SNX20 Missense_Mutation p.R242C 0.21 tolerated(0.09) benign(0.011) TCGA-DJ-A3VK-01 17 48431804 48431804 C T XYLT2 Nonsense_Mutation p.Q222* 0.14 TCGA-DJ-A3VK-01 17 57915689 57915689 G C VMP1 Missense_Mutation p.K336N 0.16 tolerated(0.1) benign(0.132) TCGA-DJ-A3VK-01 1 112524826 112524826 T C KCND3 Missense_Mutation p.N175D 0.18 tolerated(0.1) benign(0.292) TCGA-DJ-A3VK-01 21 43259762 43259762 G C PRDM15 Missense_Mutation p.L647V 0.04 tolerated_low_confidence(0.08) benign(0.022) TCGA-DJ-A3VK-01 22 30776280 30776280 G A RNF215 Silent p.L285L 0.16 TCGA-DJ-A3VK-01 3 52852225 52852225 G - ITIH4 Intron 0.10 TCGA-DJ-A3VK-01 4 84377236 84377236 C T MRPS18C Silent p.A2A 0.19 TCGA-DJ-A3VK-01 5 132342584 132342584 G C ZCCHC10 Missense_Mutation p.Q24E 0.23 deleterious(0) benign(0.388) TCGA-DJ-A3VK-01 5 34808710 34808710 C A RAI14 Missense_Mutation p.A137D 0.15 deleterious(0.03) possibly_damaging(0.628) TCGA-DJ-A3VK-01 9 140099754 140099754 T C TMEM203 Missense_Mutation p.D38G 0.13 deleterious(0.02) probably_damaging(0.957) TCGA-DJ-A3VK-01 9 32634427 32634427 C A TAF1L Missense_Mutation p.G384V 0.19 deleterious(0) probably_damaging(0.996) TCGA-DJ-A3VL-01 12 123463748 123463748 T G OGFOD2 Missense_Mutation p.L243R 0.25 deleterious(0) probably_damaging(0.998) TCGA-DJ-A3VL-01 19 16024590 16024590 C T CYP4F11 Silent p.E509E 0.11 TCGA-DJ-A3VL-01 19 51920884 51920884 T C SIGLEC10 5'UTR 0.33 TCGA-DJ-A3VL-01 1 120337206 120337206 G A REG4 3'UTR 0.28 TCGA-DJ-A3VL-01 20 61919073 61919073 G A ARFGAP1 Missense_Mutation p.E365K 0.12 tolerated(0.39) benign(0.012) TCGA-DJ-A3VL-01 2 11809697 11809697 G A NTSR2 Missense_Mutation p.P187S 0.32 tolerated(0.23) benign(0.051) TCGA-DJ-A3VL-01 3 197349145 197349145 G A AC024560.3 RNA 0.13 TCGA-DJ-A3VL-01 3 9991405 9991405 T G PRRT3 Missense_Mutation p.D132A 0.06 deleterious_low_confidence(0) benign(0.178) TCGA-DJ-A3VL-01 4 48862903 48862903 T G OCIAD1 3'UTR 0.28 TCGA-DJ-A3VL-01 5 86676346 86676346 G C RASA1 Missense_Mutation p.G875A 0.29 tolerated(0.13) probably_damaging(0.998) TCGA-DJ-A3VL-01 6 96969746 96969746 C A UFL1 5'UTR 0.37 TCGA-DJ-A3VL-01 7 140477827 140477841 TGCTGAGGTGTAGGT - BRAF In_Frame_Del p.P490_Q494del 0.13 TCGA-DJ-A3VL-01 7 99091045 99091045 C A ZNF394 3'UTR 0.30 TCGA-DJ-A3VL-01 X 13778509 13778509 C T OFD1 Missense_Mutation p.R644C 0.06 tolerated(0.22) benign(0.023) TCGA-DJ-A3VM-01 11 5264339 5264339 G T HBG1 3'Flank 0.48 TCGA-DJ-A3VM-01 12 40716160 40716160 C G LRRK2 Missense_Mutation p.S1786C 0.36 deleterious(0) probably_damaging(0.999) TCGA-DJ-A3VM-01 15 63937682 63937682 G A HERC1 Missense_Mutation p.T3693I 0.06 benign(0.004) TCGA-DJ-A3VM-01 17 8141916 8141916 G A CTC1 Nonsense_Mutation p.Q77* 0.44 TCGA-DJ-A3VM-01 18 76936903 76936904 TG - ATP9B Frame_Shift_Del p.L290Rfs*32 0.26 TCGA-DJ-A3VM-01 19 10225802 10225802 C T EIF3G Silent p.P317P 0.42 TCGA-DJ-A3VM-01 1 229606430 229606430 G A NUP133 Missense_Mutation p.S658F 0.11 tolerated(0.08) benign(0.383) TCGA-DJ-A3VM-01 20 33834779 33834779 A C MMP24 Missense_Mutation p.Q128P 0.06 tolerated(0.18) benign(0.003) TCGA-DJ-A3VM-01 3 123345769 123345769 G A MYLK Nonsense_Mutation p.Q1712* 0.07 TCGA-DJ-A3VM-01 3 32778913 32778913 A G CNOT10 Missense_Mutation p.H569R 0.33 tolerated(0.21) benign(0.164) TCGA-DJ-A3VM-01 3 43345283 43345283 A T SNRK Silent p.V196V 0.36 TCGA-DJ-A3VM-01 4 156631708 156631708 G C GUCY1A3 Missense_Mutation p.V131L 0.36 tolerated(0.28) benign(0.009) TCGA-DJ-A3VM-01 4 20751329 20751329 A C KCNIP4 Missense_Mutation p.F129V 0.10 deleterious(0) probably_damaging(1) TCGA-DJ-A3VM-01 5 37299605 37299605 G A NUP155 Silent p.A1209A 0.05 TCGA-DJ-A3VM-01 7 100841499 100841499 C G MOGAT3 Missense_Mutation p.G214A 0.43 deleterious(0) probably_damaging(0.994) TCGA-DJ-A3VM-01 7 129906739 129906739 C T CPA2 Silent p.I6I 0.39 TCGA-DJ-A3VM-01 7 45148648 45148648 T C TBRG4 Silent p.A63A 0.03 TCGA-DJ-A3VM-01 7 56079524 56079524 T C PSPH Silent p.Q203Q 0.06 TCGA-DJ-A3VM-01 8 133883768 133883768 G T TG Silent p.G150G 0.32 TCGA-DJ-A3VM-01 9 135073480 135073480 G T NTNG2 Missense_Mutation p.R114L 0.36 deleterious(0.01) probably_damaging(0.913) TCGA-DJ-A4UL-01 11 48510460 48510460 G A OR4A47 Missense_Mutation p.G39D 0.50 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-DJ-A4UL-01 11 640585 640585 C T DRD4 Silent p.A414A 0.39 TCGA-DJ-A4UL-01 12 133350748 133350748 C G GOLGA3 Missense_Mutation p.Q1434H 0.34 deleterious(0) probably_damaging(0.971) TCGA-DJ-A4UL-01 17 11757449 11757449 G A DNAH9 Missense_Mutation p.V3213I 0.34 benign(0.008) TCGA-DJ-A4UL-01 17 74011029 74011029 G C EVPL Silent p.R730R 0.36 TCGA-DJ-A4UL-01 1 145811944 145811944 T C GPR89A Missense_Mutation p.M89V 0.27 tolerated(1) benign(0) TCGA-DJ-A4UL-01 6 31496941 31496941 G A MCCD1 Silent p.G50G 0.44 TCGA-DJ-A4UL-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-DJ-A4UL-01 7 150417467 150417467 C T GIMAP1 Silent p.T125T 0.33 TCGA-DJ-A4UL-01 9 3937126 3937126 T C GLIS3 Missense_Mutation p.T592A 0.34 deleterious(0) probably_damaging(0.951) TCGA-DJ-A4UP-01 14 94964745 94964745 G A SERPINA12 5'UTR 0.05 TCGA-DJ-A4UP-01 16 84600451 84600451 T G COTL1 Nonstop_Mutation p.*143Yext*27 0.47 TCGA-DJ-A4UP-01 19 36245363 36245363 C T LIN37 Silent p.Y243Y 0.19 TCGA-DJ-A4UP-01 1 112318869 112318869 C T KCND3 Missense_Mutation p.G600R 0.09 tolerated_low_confidence(0.12) probably_damaging(0.956) TCGA-DJ-A4UP-01 22 20759722 20759722 G A ZNF74 Silent p.P133P 0.19 TCGA-DJ-A4UP-01 5 33751372 33751372 G T ADAMTS12 Intron 0.33 TCGA-DJ-A4UP-01 6 30633345 30633345 C G DHX16 Missense_Mutation p.D278H 0.15 tolerated(0.08) unknown(0) TCGA-DJ-A4UP-01 8 24250806 24250806 T C ADAMDEC1 Missense_Mutation p.M80T 0.10 deleterious(0) benign(0.144) TCGA-DJ-A4UQ-01 11 120916496 120916496 C A TBCEL Missense_Mutation p.H33N 0.15 tolerated(0.3) benign(0.131) TCGA-DJ-A4UQ-01 14 21469359 21469359 G A SLC39A2 Missense_Mutation p.G184E 0.36 deleterious(0) probably_damaging(1) TCGA-DJ-A4UQ-01 16 20570580 20570580 T C ACSM2B Missense_Mutation p.I123V 0.09 tolerated(0.27) benign(0.002) TCGA-DJ-A4UQ-01 17 28712043 28712043 G T CPD Silent p.V261V 0.20 TCGA-DJ-A4UQ-01 17 80529730 80529730 C T FOXK2 Missense_Mutation p.A298V 0.34 tolerated(0.08) benign(0.106) TCGA-DJ-A4UQ-01 19 21265058 21265058 C T ZNF714 5'UTR 0.35 TCGA-DJ-A4UQ-01 1 115276367 115276367 G A CSDE1 Missense_Mutation p.P321S 0.34 tolerated(0.14) benign(0.197) TCGA-DJ-A4UQ-01 1 115276368 115276368 T A CSDE1 Silent p.V320V 0.36 TCGA-DJ-A4UQ-01 1 17565186 17565186 G A PADI1 Missense_Mutation p.E512K 0.54 tolerated(0.09) benign(0.058) TCGA-DJ-A4UQ-01 1 205554106 205554106 C T MFSD4 Missense_Mutation p.T321M 0.39 deleterious(0.02) probably_damaging(0.994) TCGA-DJ-A4UQ-01 1 93581066 93581066 T G MTF2 Missense_Mutation p.L175V 0.24 deleterious(0.01) possibly_damaging(0.866) TCGA-DJ-A4UQ-01 2 120003514 120003514 G A STEAP3 Missense_Mutation p.V158I 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-DJ-A4UQ-01 2 27501192 27501192 C T DNAJC5G Missense_Mutation p.P171L 0.41 tolerated(0.1) benign(0.115) TCGA-DJ-A4UQ-01 4 57797761 57797761 A G REST Missense_Mutation p.I913V 0.32 tolerated(0.39) benign(0) TCGA-DJ-A4UQ-01 5 176721621 176721621 C T NSD1 Missense_Mutation p.L2418F 0.09 tolerated_low_confidence(0.06) benign(0.004) TCGA-DJ-A4UQ-01 7 121651553 121651553 C A PTPRZ1 Missense_Mutation p.P818H 0.32 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-DJ-A4UQ-01 7 150439701 150439701 C T GIMAP5 Silent p.G158G 0.37 TCGA-DJ-A4UQ-01 8 21925135 21925135 A T DMTN Missense_Mutation p.Y64F 0.17 deleterious(0) probably_damaging(0.998) TCGA-DJ-A4UR-01 11 120189106 120189106 A C POU2F3 3'UTR 0.33 TCGA-DJ-A4UR-01 11 65272905 65272905 T C MALAT1 RNA 0.41 TCGA-DJ-A4UR-01 14 20388907 20388907 A T OR4K5 Missense_Mutation p.T48S 0.04 deleterious(0.05) benign(0.297) TCGA-DJ-A4UR-01 14 42355903 42355903 C A LRFN5 Silent p.V25V 0.34 TCGA-DJ-A4UR-01 14 57088388 57088388 T C TMEM260 Silent p.L456L 0.23 TCGA-DJ-A4UR-01 16 58542903 58542903 C A NDRG4 Missense_Mutation p.T308N 0.09 deleterious(0.02) possibly_damaging(0.759) TCGA-DJ-A4UR-01 19 19655920 19655920 C T CILP2 Missense_Mutation p.R856C 0.29 deleterious(0) possibly_damaging(0.855) TCGA-DJ-A4UR-01 19 51875739 51875739 C T NKG7 Missense_Mutation p.M17I 0.32 tolerated(0.37) benign(0) TCGA-DJ-A4UR-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.37 tolerated(0.06) benign(0.006) TCGA-DJ-A4UR-01 20 3016532 3016532 G A PTPRA Missense_Mutation p.A715T 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-DJ-A4UR-01 22 32841871 32841871 C T BPIFC Missense_Mutation p.A163T 0.12 tolerated(0.48) probably_damaging(0.913) TCGA-DJ-A4UR-01 2 242135327 242135327 G A ANO7 Intron 0.08 TCGA-DJ-A4UR-01 3 46008279 46008279 C A FYCO1 Silent p.S849S 0.20 TCGA-DJ-A4UR-01 3 48725599 48725599 T C IP6K2 3'UTR 0.08 TCGA-DJ-A4UR-01 5 140166057 140166057 C T PCDHA1 Missense_Mutation p.P61L 0.15 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-DJ-A4UR-01 7 38725408 38725408 C G FAM183B Missense_Mutation p.R66S 0.35 tolerated(0.08) benign(0.391) TCGA-DJ-A4UR-01 9 139658396 139658396 G A LCN15 Silent p.D54D 0.08 TCGA-DJ-A4UR-01 X 123615678 123615678 C A TENM1 Missense_Mutation p.V1285L 0.08 tolerated(0.16) benign(0.082) TCGA-DJ-A4UR-01 X 3241966 3241966 A G MXRA5 Missense_Mutation p.I587T 0.37 deleterious(0) possibly_damaging(0.877) TCGA-DJ-A4UR-01 X 53635851 53635851 G A HUWE1 Missense_Mutation p.R761C 0.31 probably_damaging(0.994) TCGA-DJ-A4UT-01 10 104140004 104140004 A C GBF1 Splice_Site p.X1626_splice 0.25 TCGA-DJ-A4UT-01 10 106074154 106074154 C T ITPRIP 3'UTR 0.12 TCGA-DJ-A4UT-01 10 1070568 1070568 A G IDI2 Silent p.G32G 0.29 TCGA-DJ-A4UT-01 10 22675710 22675710 G C SPAG6 Missense_Mutation p.G167A 0.05 deleterious(0) probably_damaging(1) TCGA-DJ-A4UT-01 11 125490695 125490695 C T STT3A Missense_Mutation p.S703L 0.09 deleterious(0.02) benign(0.074) TCGA-DJ-A4UT-01 11 65144371 65144371 C A SLC25A45 Silent p.L172L 0.14 TCGA-DJ-A4UT-01 11 67075408 67075408 G C SSH3 Missense_Mutation p.E295Q 0.11 tolerated(0.22) benign(0.192) TCGA-DJ-A4UT-01 12 133198644 133198644 C T P2RX2 3'Flank 0.11 TCGA-DJ-A4UT-01 12 13715749 13715749 C T GRIN2B Missense_Mutation p.E1475K 0.10 tolerated(0.97) probably_damaging(0.996) TCGA-DJ-A4UT-01 15 48826312 48826312 C T FBN1 Missense_Mutation p.G276E 0.14 probably_damaging(1) TCGA-DJ-A4UT-01 15 51276303 51276303 C T AP4E1 Missense_Mutation p.S684L 0.07 deleterious(0.01) possibly_damaging(0.901) TCGA-DJ-A4UT-01 17 58469336 58469336 G A USP32 5'UTR 0.17 TCGA-DJ-A4UT-01 17 67013890 67013890 C G ABCA9 Missense_Mutation p.Q936H 0.10 deleterious(0) probably_damaging(0.999) TCGA-DJ-A4UT-01 17 67261047 67261047 C G ABCA5 Splice_Site p.X1049_splice 0.08 TCGA-DJ-A4UT-01 19 12962926 12962926 C G MAST1 Intron 0.11 TCGA-DJ-A4UT-01 19 45901546 45901546 C T PPP1R13L Missense_Mutation p.D11N 0.13 tolerated_low_confidence(0.05) benign(0.057) TCGA-DJ-A4UT-01 19 47775017 47775017 C T CCDC9 3'UTR 0.38 TCGA-DJ-A4UT-01 19 50169168 50169168 G A BCL2L12 Missense_Mutation p.E30K 0.33 tolerated_low_confidence(0.35) benign(0.001) TCGA-DJ-A4UT-01 19 52909178 52909178 G T ZNF528 Missense_Mutation p.D12Y 0.10 deleterious(0) probably_damaging(1) TCGA-DJ-A4UT-01 19 9578758 9578758 C G ZNF560 Missense_Mutation p.D289H 0.08 deleterious(0.01) probably_damaging(0.953) TCGA-DJ-A4UT-01 1 109560177 109560177 G A WDR47 Nonsense_Mutation p.Q69* 0.09 TCGA-DJ-A4UT-01 1 109560186 109560186 G A WDR47 Nonsense_Mutation p.Q66* 0.07 TCGA-DJ-A4UT-01 1 11907290 11907290 G T NPPA Silent p.L110L 0.05 TCGA-DJ-A4UT-01 1 176852036 176852036 G A ASTN1 Silent p.I1107I 0.13 TCGA-DJ-A4UT-01 1 215844402 215844402 C G USH2A Missense_Mutation p.R4682T 0.09 benign(0) TCGA-DJ-A4UT-01 1 234528271 234528271 G C TARBP1 Missense_Mutation p.L1530V 0.16 tolerated(0.08) possibly_damaging(0.701) TCGA-DJ-A4UT-01 20 34618286 34618286 G C CNBD2 Missense_Mutation p.D479H 0.10 deleterious(0.01) possibly_damaging(0.735) TCGA-DJ-A4UT-01 20 48522886 48522886 G A SPATA2 Missense_Mutation p.P278L 0.09 tolerated(0.1) possibly_damaging(0.628) TCGA-DJ-A4UT-01 2 101009860 101009860 C T CHST10 Silent p.P306P 0.08 TCGA-DJ-A4UT-01 2 105924339 105924339 G A TGFBRAP1 Silent p.I140I 0.17 TCGA-DJ-A4UT-01 2 128467330 128467330 C T WDR33 Missense_Mutation p.D1137N 0.05 tolerated_low_confidence(0.14) possibly_damaging(0.811) TCGA-DJ-A4UT-01 2 37334481 37334481 C T EIF2AK2 Missense_Mutation p.E531K 0.06 tolerated(0.17) possibly_damaging(0.546) TCGA-DJ-A4UT-01 3 149677884 149677884 G A RNF13 Missense_Mutation p.E248K 0.10 deleterious(0.01) probably_damaging(0.95) TCGA-DJ-A4UT-01 4 69962284 69962284 T A UGT2B7 Missense_Mutation p.F16I 0.32 tolerated(0.08) benign(0.016) TCGA-DJ-A4UT-01 5 41203192 41203192 G T C6 Missense_Mutation p.H47Q 0.13 tolerated(0.92) benign(0.005) TCGA-DJ-A4UT-01 5 96349489 96349489 G A LNPEP Missense_Mutation p.D725N 0.14 tolerated(0.38) possibly_damaging(0.568) TCGA-DJ-A4UT-01 6 28056396 28056396 T C ZNF165 Silent p.I202I 0.31 TCGA-DJ-A4UT-01 7 151962127 151962127 A T KMT2C Missense_Mutation p.C394S 0.04 probably_damaging(0.999) TCGA-DJ-A4UT-01 7 50129291 50129291 G A ZPBP Nonsense_Mutation p.R48* 0.12 TCGA-DJ-A4UT-01 9 26995683 26995683 C G LRRC19 Missense_Mutation p.E317Q 0.11 deleterious(0.02) possibly_damaging(0.845) TCGA-DJ-A4UT-01 X 103031905 103031905 G A PLP1 5'UTR 0.10 TCGA-DJ-A4UT-01 X 129318340 129318340 G T RAB33A Missense_Mutation p.V114F 0.25 deleterious(0) possibly_damaging(0.895) TCGA-DJ-A4UT-01 X 153184648 153184648 G A ARHGAP4 Silent p.V297V 0.10 TCGA-DJ-A4UT-01 X 18970621 18970621 C T PHKA2 Missense_Mutation p.M92I 0.09 tolerated(0.09) possibly_damaging(0.474) TCGA-DJ-A4UW-01 14 20528213 20528213 A T OR4L1 Nonsense_Mutation p.K4* 0.05 TCGA-DJ-A4UW-01 15 42114280 42114280 C T MAPKBP1 Silent p.C1007C 0.38 TCGA-DJ-A4UW-01 17 9801501 9801501 A G RCVRN Missense_Mutation p.F172L 0.32 deleterious(0) probably_damaging(0.998) TCGA-DJ-A4UW-01 1 158548923 158548923 G T OR10X1 Missense_Mutation p.T256N 0.05 deleterious(0) probably_damaging(0.984) TCGA-DJ-A4UW-01 1 17720532 17720532 C T PADI6 RNA 0.16 TCGA-DJ-A4UW-01 21 10908822 10908822 T C TPTE Intron 0.23 TCGA-DJ-A4UW-01 5 112176431 112176431 G T APC Missense_Mutation p.D1714Y 0.24 possibly_damaging(0.713) TCGA-DJ-A4UW-01 5 176673763 176673763 A G NSD1 Missense_Mutation p.N1488S 0.36 tolerated(0.83) benign(0.005) TCGA-DJ-A4UW-01 6 116600261 116600261 G A TSPYL1 Nonsense_Mutation p.Q245* 0.36 TCGA-DJ-A4UW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-DJ-A4UW-01 X 100658838 100658838 A C GLA Silent p.P110P 0.08 TCGA-DJ-A4V0-01 10 132944819 132944819 T C TCERG1L Missense_Mutation p.N380S 0.08 tolerated(0.06) benign(0.143) TCGA-DJ-A4V0-01 14 36783808 36783808 T C MBIP Missense_Mutation p.R161G 0.14 deleterious(0) probably_damaging(0.999) TCGA-DJ-A4V0-01 19 58967094 58967094 G A ZNF324B Silent p.A261A 0.08 TCGA-DJ-A4V0-01 22 21799594 21799594 G A HIC2 Missense_Mutation p.R137H 0.08 deleterious(0) possibly_damaging(0.812) TCGA-DJ-A4V0-01 3 153220304 153220304 A G C3orf79 3'UTR 0.16 TCGA-DJ-A4V0-01 6 133802618 133802618 C A EYA4 Missense_Mutation p.Q330K 0.12 tolerated(0.67) possibly_damaging(0.839) TCGA-DJ-A4V2-01 10 28897268 28897268 A G WAC Missense_Mutation p.Q358R 0.05 deleterious(0.02) probably_damaging(0.966) TCGA-DJ-A4V2-01 11 117280645 117280645 G A CEP164 Missense_Mutation p.D1354N 0.30 tolerated(0.17) probably_damaging(0.95) TCGA-DJ-A4V2-01 15 35045227 35045227 G A GJD2 Nonsense_Mutation p.R140* 0.23 TCGA-DJ-A4V2-01 17 36486995 36486995 G A GPR179 Silent p.S819S 0.50 TCGA-DJ-A4V2-01 22 19222058 19222058 C T CLTCL1 Missense_Mutation p.A381T 0.09 deleterious(0.01) benign(0.22) TCGA-DJ-A4V2-01 3 142266707 142266707 G A ATR Nonsense_Mutation p.Q1073* 0.31 TCGA-DJ-A4V2-01 3 42906480 42906480 G T ACKR2 Silent p.L162L 0.28 TCGA-DJ-A4V2-01 4 156825198 156825198 G T TDO2 Missense_Mutation p.G22C 0.36 deleterious(0.01) possibly_damaging(0.548) TCGA-DJ-A4V2-01 5 26903745 26903745 C T CDH9 Splice_Site p.X333_splice 0.04 TCGA-DJ-A4V2-01 7 100201501 100201501 G A PCOLCE Intron 0.13 TCGA-DJ-A4V2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-DJ-A4V2-01 X 91133044 91133044 A G PCDH11X Missense_Mutation p.N602S 0.07 deleterious(0) probably_damaging(0.999) TCGA-DJ-A4V4-01 10 104596873 104596873 G T CYP17A1 Silent p.A82A 0.28 TCGA-DJ-A4V4-01 10 76781017 76781017 G C KAT6B Missense_Mutation p.E999Q 0.07 probably_damaging(0.914) TCGA-DJ-A4V4-01 11 117314617 117314617 C A DSCAML1 Nonsense_Mutation p.E1343* 0.17 TCGA-DJ-A4V4-01 12 6619571 6619571 C - NCAPD2 Intron 0.09 TCGA-DJ-A4V4-01 12 66703764 66703764 C A HELB Missense_Mutation p.F352L 0.09 deleterious(0) probably_damaging(0.915) TCGA-DJ-A4V4-01 12 94580161 94580161 C T PLXNC1 Missense_Mutation p.R451C 0.09 deleterious(0.01) benign(0.33) TCGA-DJ-A4V4-01 15 43738724 43738724 C T TP53BP1 Silent p.E967E 0.07 TCGA-DJ-A4V4-01 16 8875180 8875180 G A ABAT Missense_Mutation p.G466S 0.07 tolerated(0.12) benign(0.086) TCGA-DJ-A4V4-01 17 47783622 47783622 G C SLC35B1 Missense_Mutation p.L95V 0.21 deleterious(0.04) benign(0.107) TCGA-DJ-A4V4-01 17 914042 914042 G C ABR Silent p.L721L 0.08 TCGA-DJ-A4V4-01 19 51015780 51015780 C T ASPDH Missense_Mutation p.A164T 0.20 tolerated(0.55) possibly_damaging(0.608) TCGA-DJ-A4V4-01 1 197391022 197391022 C G CRB1 Missense_Mutation p.I688M 0.12 deleterious(0.01) possibly_damaging(0.839) TCGA-DJ-A4V4-01 20 2796200 2796200 C G C20orf141 Missense_Mutation p.L93V 0.09 tolerated(0.22) possibly_damaging(0.567) TCGA-DJ-A4V4-01 2 225362566 225362566 C A CUL3 Missense_Mutation p.R537S 0.09 tolerated(1) benign(0.01) TCGA-DJ-A4V4-01 2 242109234 242109234 C G PPP1R7 Missense_Mutation p.I286M 0.10 deleterious(0.01) benign(0.399) TCGA-DJ-A4V4-01 2 63401895 63401895 C G WDPCP Missense_Mutation p.G663A 0.10 tolerated(0.63) benign(0.001) TCGA-DJ-A4V4-01 2 64779995 64779995 G A AFTPH Missense_Mutation p.E463K 0.12 tolerated(0.29) benign(0.012) TCGA-DJ-A4V4-01 2 64780025 64780025 G T AFTPH Nonsense_Mutation p.E473* 0.05 TCGA-DJ-A4V4-01 5 147480098 147480098 G C SPINK5 Missense_Mutation p.D392H 0.11 deleterious(0) probably_damaging(1) TCGA-DJ-A4V4-01 5 153783613 153783613 G A GALNT10 Intron 0.13 TCGA-DJ-A4V4-01 5 32274215 32274215 A G MTMR12 Silent p.L52L 0.30 TCGA-DJ-A4V4-01 5 71490881 71490881 G A MAP1B Missense_Mutation p.E567K 0.09 unknown(0) TCGA-DJ-A4V4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-DJ-A4V4-01 7 157874039 157874039 C T PTPRN2 Silent p.V558V 0.06 TCGA-DJ-A4V4-01 9 125832650 125832650 G A RABGAP1 Missense_Mutation p.E644K 0.05 deleterious(0) probably_damaging(0.992) TCGA-DJ-A4V4-01 9 134518626 134518626 C T RAPGEF1 Missense_Mutation p.S166N 0.33 tolerated(0.06) possibly_damaging(0.894) TCGA-DJ-A4V5-01 10 122612090 122612090 T G WDR11 Missense_Mutation p.D47E 0.40 tolerated(0.12) benign(0.373) TCGA-DJ-A4V5-01 11 120169033 120169033 C T POU2F3 Silent p.H66H 0.28 TCGA-DJ-A4V5-01 14 106552349 106552349 G C IGHV3-9 Missense_Mutation p.S97C 0.34 deleterious_low_confidence(0) possibly_damaging(0.777) TCGA-DJ-A4V5-01 15 65743407 65743407 T G DPP8 Missense_Mutation p.N835T 0.30 deleterious(0) probably_damaging(0.998) TCGA-DJ-A4V5-01 16 56309933 56309933 C T GNAO1 Silent p.I84I 0.21 TCGA-DJ-A4V5-01 19 3600480 3600480 G A TBXA2R Silent p.G51G 0.28 TCGA-DJ-A4V5-01 1 4832438 4832438 G A AJAP1 Missense_Mutation p.R339Q 0.08 tolerated(0.09) benign(0.007) TCGA-DO-A1JZ-01 15 43738684 43738684 C A TP53BP1 Missense_Mutation p.G981W 0.49 tolerated(0.08) possibly_damaging(0.819) TCGA-DO-A1JZ-01 20 31981850 31981850 G A CDK5RAP1 Missense_Mutation p.T144I 0.05 deleterious(0) probably_damaging(0.976) TCGA-DO-A1JZ-01 2 62132935 62132935 C A COMMD1 Missense_Mutation p.P41Q 0.07 deleterious(0.04) probably_damaging(0.971) TCGA-DO-A1JZ-01 2 86297188 86297188 C T POLR1A Missense_Mutation p.E607K 0.58 deleterious(0) probably_damaging(1) TCGA-DO-A1JZ-01 4 178283471 178283471 A G NEIL3 Missense_Mutation p.N555S 0.17 tolerated(0.09) benign(0.057) TCGA-DO-A1K0-01 10 104125331 104125332 - T GBF1 Frame_Shift_Ins p.D762* 0.36 TCGA-DO-A1K0-01 11 60636685 60636685 G A ZP1 Silent p.P88P 0.11 TCGA-DO-A1K0-01 16 72831869 72831869 T C ZFHX3 Missense_Mutation p.H1571R 0.46 probably_damaging(0.977) TCGA-DO-A1K0-01 1 248437065 248437065 G T OR2T33 Missense_Mutation p.H18N 0.13 tolerated(0.13) possibly_damaging(0.754) TCGA-DO-A1K0-01 1 32155980 32155980 C A COL16A1 Silent p.V499V 0.08 TCGA-DO-A1K0-01 6 117683908 117683908 G T ROS1 Missense_Mutation p.T1080K 0.32 tolerated(0.17) benign(0.309) TCGA-DO-A1K0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-DO-A1K0-01 9 134136508 134136508 G A FAM78A Missense_Mutation p.R185W 0.44 deleterious(0) probably_damaging(0.999) TCGA-DO-A1K0-01 9 134612849 134612849 G T RAPGEF1 5'UTR 0.07 TCGA-DO-A1K0-01 9 138586136 138586136 G A SOHLH1 Intron 0.33 TCGA-DO-A1K0-01 X 122616871 122616871 T C GRIA3 Silent p.Y887Y 0.08 TCGA-DO-A2HM-01 10 103587154 103587154 C T KCNIP2 Missense_Mutation p.E272K 0.06 tolerated(0.07) possibly_damaging(0.908) TCGA-DO-A2HM-01 10 134647628 134647628 C G TTC40 Splice_Site p.X2289_splice 0.12 TCGA-DO-A2HM-01 10 25464395 25464395 C A GPR158 Missense_Mutation p.Q16K 0.06 tolerated_low_confidence(1) unknown(0) TCGA-DO-A2HM-01 10 3824138 3824138 T C KLF6 Missense_Mutation p.K124R 0.12 tolerated(0.49) benign(0.112) TCGA-DO-A2HM-01 10 97817702 97817702 C T CCNJ Nonsense_Mutation p.Q286* 0.08 TCGA-DO-A2HM-01 11 125780286 125780286 T C DDX25 Silent p.L179L 0.08 TCGA-DO-A2HM-01 11 125780318 125780318 G A DDX25 Silent p.Q189Q 0.08 TCGA-DO-A2HM-01 11 36597776 36597776 C T RAG1 Silent p.F974F 0.08 TCGA-DO-A2HM-01 11 47200728 47200728 C A PACSIN3 Missense_Mutation p.M294I 0.10 deleterious(0) probably_damaging(0.949) TCGA-DO-A2HM-01 11 65731499 65731499 C T SART1 Intron 0.18 TCGA-DO-A2HM-01 11 66050518 66050518 G C CNIH2 Missense_Mutation p.E71Q 0.06 deleterious(0.03) probably_damaging(0.912) TCGA-DO-A2HM-01 11 7064628 7064628 C G NLRP14 Silent p.V457V 0.05 TCGA-DO-A2HM-01 11 78437190 78437190 C T TENM4 Missense_Mutation p.E1162K 0.10 deleterious(0) possibly_damaging(0.65) TCGA-DO-A2HM-01 12 104851270 104851270 C A CHST11 Silent p.I27I 0.05 TCGA-DO-A2HM-01 12 10862690 10862690 T C YBX3 Silent p.E199E 0.08 TCGA-DO-A2HM-01 12 12240312 12240312 C G BCL2L14 Missense_Mutation p.S200C 0.09 deleterious(0.01) possibly_damaging(0.799) TCGA-DO-A2HM-01 12 13906627 13906627 C T GRIN2B Missense_Mutation p.G212R 0.07 deleterious(0.05) possibly_damaging(0.734) TCGA-DO-A2HM-01 12 43858536 43858536 C T ADAMTS20 Splice_Site p.X456_splice 0.17 TCGA-DO-A2HM-01 12 46244997 46244997 C T ARID2 Nonsense_Mutation p.Q1031* 0.11 TCGA-DO-A2HM-01 12 52345548 52345548 C T ACVR1B Silent p.A7A 0.25 TCGA-DO-A2HM-01 12 54741787 54741787 G A COPZ1 Silent p.V133V 0.12 TCGA-DO-A2HM-01 13 45914212 45914212 G A TPT1 Silent p.V70V 0.08 TCGA-DO-A2HM-01 13 50237326 50237326 C T EBPL Missense_Mutation p.E83K 0.06 deleterious(0) probably_damaging(0.987) TCGA-DO-A2HM-01 13 99063014 99063014 C T FARP1 Silent p.F543F 0.11 TCGA-DO-A2HM-01 14 24678980 24678980 C T CHMP4A 3'UTR 0.10 TCGA-DO-A2HM-01 15 25420149 25420149 G A SNORD115-3 RNA 0.06 TCGA-DO-A2HM-01 15 43348594 43348594 C G UBR1 Missense_Mutation p.R410T 0.06 deleterious(0) benign(0.305) TCGA-DO-A2HM-01 16 19195026 19195026 G A SYT17 Missense_Mutation p.D170N 0.10 deleterious(0.01) possibly_damaging(0.883) TCGA-DO-A2HM-01 16 19451644 19451644 C G TMC5 Missense_Mutation p.S95C 0.09 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-DO-A2HM-01 16 48395650 48395650 A G LONP2 3'Flank 0.08 TCGA-DO-A2HM-01 16 67663340 67663340 G C CTCF Missense_Mutation p.D581H 0.10 tolerated(0.09) possibly_damaging(0.497) TCGA-DO-A2HM-01 16 67979417 67979417 C G SLC12A4 Missense_Mutation p.E965Q 0.05 tolerated(0.37) benign(0.34) TCGA-DO-A2HM-01 16 69201033 69201033 C G CIRH1A Nonsense_Mutation p.S630* 0.04 TCGA-DO-A2HM-01 16 90020690 90020690 C T DEF8 Silent p.F71F 0.04 TCGA-DO-A2HM-01 16 90020691 90020691 C T DEF8 Missense_Mutation p.R72W 0.04 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-DO-A2HM-01 17 10533478 10533478 C T MYH3 Silent p.Q1831Q 0.08 TCGA-DO-A2HM-01 17 18150552 18150552 C G FLII Missense_Mutation p.K869N 0.11 tolerated(0.12) benign(0.123) TCGA-DO-A2HM-01 17 2233812 2233812 C T TSR1 Silent p.Q589Q 0.04 TCGA-DO-A2HM-01 17 42458006 42458006 G A ITGA2B Silent p.I467I 0.12 TCGA-DO-A2HM-01 17 46148811 46148811 C G CBX1 Missense_Mutation p.D182H 0.06 deleterious(0.01) benign(0.364) TCGA-DO-A2HM-01 17 72959073 72959073 C T HID1 Missense_Mutation p.R164Q 0.09 tolerated(0.1) possibly_damaging(0.509) TCGA-DO-A2HM-01 17 7798683 7798683 G C CHD3 Missense_Mutation p.Q569H 0.05 benign(0.216) TCGA-DO-A2HM-01 17 7979610 7979610 G A ALOX12B Missense_Mutation p.S472L 0.16 deleterious(0.03) possibly_damaging(0.821) TCGA-DO-A2HM-01 18 59947626 59947626 G A KIAA1468 Missense_Mutation p.D1001N 0.07 tolerated(0.24) benign(0.209) TCGA-DO-A2HM-01 18 74817234 74817234 C T MBP 5'UTR 0.05 TCGA-DO-A2HM-01 19 18119799 18119799 G A ARRDC2 Missense_Mutation p.E121K 0.04 tolerated(0.17) probably_damaging(1) TCGA-DO-A2HM-01 19 3523039 3523039 G A FZR1 Missense_Mutation p.E18K 0.11 tolerated(0.18) benign(0.017) TCGA-DO-A2HM-01 19 3586871 3586871 C T GIPC3 Silent p.I157I 0.08 TCGA-DO-A2HM-01 19 4501226 4501226 G A HDGFRP2 Missense_Mutation p.E610K 0.09 deleterious(0) possibly_damaging(0.502) TCGA-DO-A2HM-01 19 45889407 45889407 G A PPP1R13L Missense_Mutation p.S616F 0.27 deleterious(0) possibly_damaging(0.485) TCGA-DO-A2HM-01 19 47177807 47177807 C T PRKD2 Silent p.G870G 0.13 TCGA-DO-A2HM-01 19 51172499 51172499 C T SHANK1 Missense_Mutation p.M906I 0.06 benign(0.017) TCGA-DO-A2HM-01 19 9489680 9489680 G C ZNF177 Missense_Mutation p.E26Q 0.08 deleterious(0) possibly_damaging(0.756) TCGA-DO-A2HM-01 1 10209302 10209302 T C UBE4B Silent p.Y884Y 0.07 TCGA-DO-A2HM-01 1 114380398 114380398 G A PTPN22 Missense_Mutation p.P542S 0.06 tolerated(0.23) benign(0.437) TCGA-DO-A2HM-01 1 153346294 153346294 G A S100A12 3'UTR 0.06 TCGA-DO-A2HM-01 1 156821796 156821796 G A INSRR Silent p.V275V 0.11 TCGA-DO-A2HM-01 1 178820385 178820385 C T ANGPTL1 Missense_Mutation p.G452E 0.06 deleterious(0) probably_damaging(1) TCGA-DO-A2HM-01 1 229567331 229567331 G C ACTA1 Missense_Mutation p.S350W 0.05 deleterious_low_confidence(0.01) benign(0.261) TCGA-DO-A2HM-01 1 39926406 39926406 G A MACF1 Missense_Mutation p.D5096N 0.06 probably_damaging(0.984) TCGA-DO-A2HM-01 1 46080813 46080813 C T NASP Nonsense_Mutation p.Q599* 0.04 TCGA-DO-A2HM-01 20 44670044 44670044 G C SLC12A5 Missense_Mutation p.E334Q 0.07 tolerated(0.47) benign(0.096) TCGA-DO-A2HM-01 21 45553535 45553535 C G C21orf33 5'UTR 0.27 TCGA-DO-A2HM-01 21 45799002 45799002 C G TRPM2 Missense_Mutation p.I379M 0.05 deleterious(0.04) possibly_damaging(0.764) TCGA-DO-A2HM-01 22 36920659 36920659 C T EIF3D Missense_Mutation p.R97Q 0.11 tolerated(0.1) possibly_damaging(0.746) TCGA-DO-A2HM-01 22 40802633 40802633 C G SGSM3 Silent p.L384L 0.17 TCGA-DO-A2HM-01 2 128036808 128036808 C G ERCC3 Missense_Mutation p.K557N 0.15 deleterious(0) probably_damaging(0.93) TCGA-DO-A2HM-01 2 130910385 130910385 C T SMPD4 Missense_Mutation p.E782K 0.18 tolerated(0.2) possibly_damaging(0.494) TCGA-DO-A2HM-01 2 227662792 227662792 G A IRS1 Silent p.F221F 0.06 TCGA-DO-A2HM-01 2 48040983 48040983 C G FBXO11 Missense_Mutation p.R677T 0.14 tolerated(0.27) possibly_damaging(0.497) TCGA-DO-A2HM-01 3 122437591 122437591 C G PARP14 Missense_Mutation p.I1531M 0.04 deleterious(0.01) benign(0.444) TCGA-DO-A2HM-01 3 142537121 142537121 A G PCOLCE2 3'UTR 0.12 TCGA-DO-A2HM-01 3 151475099 151475099 C T AADACL2 Missense_Mutation p.S308L 0.08 deleterious(0.04) benign(0.049) TCGA-DO-A2HM-01 3 4715019 4715019 G A ITPR1 Missense_Mutation p.V787M 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-DO-A2HM-01 3 50386439 50386439 C T NPRL2 Missense_Mutation p.E151K 0.07 tolerated(0.45) possibly_damaging(0.526) TCGA-DO-A2HM-01 3 52238848 52238848 C T ALAS1 Silent p.L239L 0.08 TCGA-DO-A2HM-01 3 5244672 5244672 C T EDEM1 Missense_Mutation p.P294S 0.08 tolerated(0.11) possibly_damaging(0.457) TCGA-DO-A2HM-01 4 15780234 15780234 G A CD38 Missense_Mutation p.R66Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-DO-A2HM-01 4 39077582 39077582 C T KLHL5 Intron 0.09 TCGA-DO-A2HM-01 4 71346814 71346814 C G MUC7 Nonsense_Mutation p.S118* 0.07 TCGA-DO-A2HM-01 4 81122505 81122505 C T PRDM8 Missense_Mutation p.S94L 0.17 deleterious(0) possibly_damaging(0.848) TCGA-DO-A2HM-01 5 172573902 172573902 C G BNIP1 Missense_Mutation p.L40V 0.10 deleterious(0) probably_damaging(0.911) TCGA-DO-A2HM-01 5 173337561 173337561 G A CPEB4 Silent p.E387E 0.07 TCGA-DO-A2HM-01 5 180048729 180048729 C T FLT4 Silent p.K611K 0.07 TCGA-DO-A2HM-01 5 43616136 43616136 G A NNT Missense_Mutation p.D190N 0.09 deleterious(0) probably_damaging(0.93) TCGA-DO-A2HM-01 6 155450556 155450556 C T TIAM2 Missense_Mutation p.H67Y 0.13 tolerated_low_confidence(0.07) benign(0.397) TCGA-DO-A2HM-01 6 31543617 31543617 C T TNF Silent p.L33L 0.06 TCGA-DO-A2HM-01 6 36995226 36995226 G C FGD2 Missense_Mutation p.D543H 0.09 deleterious(0.05) benign(0.332) TCGA-DO-A2HM-01 6 42976211 42976211 C T PPP2R5D Nonsense_Mutation p.Q342* 0.08 TCGA-DO-A2HM-01 6 73834209 73834209 G T KCNQ5 Missense_Mutation p.K407N 0.06 tolerated(0.11) benign(0.002) TCGA-DO-A2HM-01 7 140434373 140434373 C G BRAF 3'UTR 0.07 TCGA-DO-A2HM-01 7 142111442 142111442 G A TRBV5-7 Silent p.N98N 0.09 TCGA-DO-A2HM-01 8 145689403 145689403 C A CYHR1 Intron 0.08 TCGA-DO-A2HM-01 9 27949733 27949733 C T LINGO2 Missense_Mutation p.E313K 0.06 deleterious(0.03) possibly_damaging(0.772) TCGA-DO-A2HM-01 9 74300217 74300217 C G TMEM2 Missense_Mutation p.E1350Q 0.08 tolerated(0.23) benign(0.091) TCGA-DO-A2HM-01 X 119573020 119573020 G C LAMP2 Intron 0.18 TCGA-DO-A2HM-01 X 46898446 46898446 G A JADE3 Silent p.L317L 0.17 TCGA-E3-A3DY-01 11 71185490 71185490 G A NADSYN1 Missense_Mutation p.R239H 0.09 deleterious(0) probably_damaging(0.968) TCGA-E3-A3DY-01 16 14304130 14304130 C T MKL2 Missense_Mutation p.T62M 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-E3-A3DY-01 17 80206856 80206856 C A CSNK1D Missense_Mutation p.E364D 0.15 tolerated_low_confidence(0.58) benign(0.011) TCGA-E3-A3DY-01 18 74153207 74153207 C A ZNF516 Missense_Mutation p.A602S 0.14 tolerated(0.53) benign(0.115) TCGA-E3-A3DY-01 1 55555380 55555380 T C USP24 Silent p.E2196E 0.17 TCGA-E3-A3DY-01 5 157078329 157078329 G A SOX30 Missense_Mutation p.P253L 0.06 tolerated_low_confidence(0.45) benign(0.001) TCGA-E3-A3DY-01 5 36985887 36985887 A G NIPBL Missense_Mutation p.K869E 0.08 tolerated_low_confidence(0.08) benign(0.047) TCGA-E3-A3DY-01 5 70840993 70840993 C T BDP1 Missense_Mutation p.P2231S 0.22 deleterious(0.01) benign(0.314) TCGA-E3-A3DY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-E3-A3DY-01 9 140332516 140332516 C A ENTPD8 Silent p.A49A 0.06 TCGA-E3-A3DY-01 Y 16734111 16734111 C G NLGN4Y Missense_Mutation p.L38V 0.06 tolerated(0.61) benign(0.003) TCGA-E3-A3DZ-01 10 27389274 27389274 T G ANKRD26 5'UTR 0.49 TCGA-E3-A3DZ-01 10 43089114 43089114 G A ZNF33B Silent p.L428L 0.39 TCGA-E3-A3DZ-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.39 deleterious(0.02) benign(0.046) TCGA-E3-A3DZ-01 11 75134897 75134897 G A KLHL35 Missense_Mutation p.R468W 0.10 deleterious(0) unknown(0) TCGA-E3-A3DZ-01 11 95522617 95522617 C G FAM76B Missense_Mutation p.C9S 0.15 deleterious(0) probably_damaging(0.999) TCGA-E3-A3DZ-01 12 12874031 12874031 T G CDKN1B 3'UTR 0.25 TCGA-E3-A3DZ-01 14 102807889 102807890 GG - ZNF839 Frame_Shift_Del p.Q719Hfs*58 0.38 TCGA-E3-A3DZ-01 14 102807891 102807891 T C ZNF839 Missense_Mutation p.V720A 0.33 tolerated(0.58) benign(0.018) TCGA-E3-A3DZ-01 14 24422957 24422957 G A DHRS4 5'UTR 0.37 TCGA-E3-A3DZ-01 15 43446993 43446995 CAG - TMEM62 In_Frame_Del p.S384del 0.33 TCGA-E3-A3DZ-01 15 63901361 63901361 G - HERC1 Frame_Shift_Del p.N4835Kfs*41 0.32 TCGA-E3-A3DZ-01 16 113086 113086 G A RHBDF1 Missense_Mutation p.A186V 0.15 tolerated(0.9) possibly_damaging(0.685) TCGA-E3-A3DZ-01 19 58153415 58153415 A G ZNF211 Missense_Mutation p.S586G 0.03 tolerated(0.12) benign(0.113) TCGA-E3-A3DZ-01 1 118565931 118565931 C G SPAG17 Missense_Mutation p.K1355N 0.47 deleterious(0.01) probably_damaging(0.92) TCGA-E3-A3DZ-01 1 249151529 249151529 T G ZNF692 Missense_Mutation p.S132R 0.40 tolerated(0.29) benign(0.187) TCGA-E3-A3DZ-01 1 33233411 33233411 A G KIAA1522 Missense_Mutation p.K87E 0.04 deleterious(0.02) unknown(0) TCGA-E3-A3DZ-01 2 109087511 109087511 A T GCC2 Missense_Mutation p.S576C 0.50 deleterious(0.03) possibly_damaging(0.751) TCGA-E3-A3DZ-01 4 164506962 164506962 C T MARCH1 Missense_Mutation p.R121H 0.25 deleterious(0) probably_damaging(0.996) TCGA-E3-A3DZ-01 4 71465351 71465351 T A AMBN Missense_Mutation p.H94Q 0.05 tolerated(0.12) possibly_damaging(0.474) TCGA-E3-A3DZ-01 4 89702434 89702434 T A FAM13A Missense_Mutation p.Q447L 0.30 tolerated(0.16) benign(0.044) TCGA-E3-A3DZ-01 6 39512314 39512314 C G KIF6 Intron 0.07 TCGA-E3-A3DZ-01 7 51092971 51092971 C T COBL Silent p.L1201L 0.36 TCGA-E3-A3DZ-01 8 104444914 104444914 A G DCAF13 Missense_Mutation p.I396V 0.45 tolerated(0.15) benign(0.053) TCGA-E3-A3DZ-01 9 97329750 97329750 C A FBP2 Intron 0.06 TCGA-E3-A3DZ-01 X 107167660 107167660 G A MID2 Missense_Mutation p.R508H 0.05 deleterious(0.01) probably_damaging(0.989) TCGA-E3-A3DZ-01 X 119500552 119500552 G A ATP1B4 Missense_Mutation p.G79D 0.45 tolerated(0.14) benign(0.032) TCGA-E3-A3DZ-01 X 69283005 69283005 G T OTUD6A Missense_Mutation p.V211L 0.40 tolerated(0.07) benign(0.426) TCGA-E3-A3E0-01 14 24774190 24774190 G T NOP9 Silent p.V600V 0.32 TCGA-E3-A3E0-01 1 155147749 155147749 G A TRIM46 Intron 0.06 TCGA-E3-A3E0-01 1 33241518 33241518 G A YARS 3'UTR 0.09 TCGA-E3-A3E0-01 2 60688216 60688216 C T BCL11A Missense_Mutation p.E611K 0.36 tolerated(0.29) benign(0.004) TCGA-E3-A3E0-01 2 9570993 9570993 G A CPSF3 Missense_Mutation p.D109N 0.31 deleterious(0) probably_damaging(0.966) TCGA-E3-A3E0-01 3 124629312 124629312 G T MUC13 Silent p.I428I 0.18 TCGA-E3-A3E0-01 5 114482788 114482788 G T TRIM36 Missense_Mutation p.P201Q 0.33 deleterious(0) probably_damaging(0.92) TCGA-E3-A3E0-01 5 130769300 130769300 T A RAPGEF6 Missense_Mutation p.H1274L 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-E3-A3E0-01 8 37795175 37795175 G A GOT1L1 Silent p.Y130Y 0.40 TCGA-E3-A3E0-01 9 70999448 70999448 A G PGM5 Missense_Mutation p.K187E 0.36 tolerated(0.06) benign(0.023) TCGA-E3-A3E0-01 X 107812034 107812034 G A COL4A5 Missense_Mutation p.G123R 0.34 unknown(0) TCGA-E3-A3E1-01 11 134029936 134029936 C G NCAPD3 Missense_Mutation p.D1240H 0.06 deleterious(0) probably_damaging(0.95) TCGA-E3-A3E1-01 13 46619560 46619560 T A ZC3H13 Missense_Mutation p.E28V 0.03 unknown(0) TCGA-E3-A3E1-01 16 823129 823129 C G MSLNL Missense_Mutation p.Q713H 0.05 probably_damaging(0.964) TCGA-E3-A3E1-01 17 4020293 4020293 G C ZZEF1 Missense_Mutation p.L223V 0.05 deleterious(0) probably_damaging(0.998) TCGA-E3-A3E1-01 17 42945215 42945215 A G EFTUD2 Missense_Mutation p.V370A 0.12 deleterious(0) probably_damaging(0.923) TCGA-E3-A3E1-01 17 72366698 72366698 G A GPR142 Missense_Mutation p.V133I 0.11 tolerated_low_confidence(0.28) benign(0.003) TCGA-E3-A3E1-01 19 4362382 4362382 G A SH3GL1 Missense_Mutation p.A285V 0.14 tolerated(0.36) benign(0.366) TCGA-E3-A3E1-01 1 38409493 38409493 G C INPP5B Silent p.V75V 0.02 TCGA-E3-A3E1-01 21 42812881 42812881 A G MX1 Missense_Mutation p.N220S 0.09 deleterious(0) probably_damaging(0.989) TCGA-E3-A3E1-01 2 179454215 179454218 TTTG - TTN Frame_Shift_Del p.T20745Rfs*10 0.26 TCGA-E3-A3E1-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-E3-A3E1-01 X 101138612 101138612 C T ZMAT1 Missense_Mutation p.R596Q 0.05 tolerated(0.14) benign(0.073) TCGA-E3-A3E1-01 X 138668623 138668623 C T MCF2 Missense_Mutation p.S925N 0.06 tolerated(0.23) benign(0.001) TCGA-E3-A3E1-01 X 149931175 149931175 C T MTMR1 Silent p.S657S 0.24 TCGA-E3-A3E2-01 17 57298002 57298002 C T GDPD1 Missense_Mutation p.S11F 0.33 deleterious(0.03) possibly_damaging(0.736) TCGA-E3-A3E2-01 19 2222329 2222329 G A DOT1L Missense_Mutation p.G1054D 0.06 deleterious_low_confidence(0) benign(0.155) TCGA-E3-A3E2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-E3-A3E3-01 14 24845682 24845682 C G NFATC4 Missense_Mutation p.P810A 0.33 tolerated_low_confidence(0.05) benign(0.003) TCGA-E3-A3E3-01 14 92487898 92487898 A G TRIP11 Splice_Site p.X196_splice 0.16 TCGA-E3-A3E3-01 15 93552546 93552547 - G CHD2 Frame_Shift_Ins p.R1530Efs*15 0.30 TCGA-E3-A3E3-01 16 31488274 31488274 G A TGFB1I1 Silent p.L354L 0.17 TCGA-E3-A3E3-01 17 37101328 37101328 A C FBXO47 Missense_Mutation p.H226Q 0.38 tolerated(0.29) benign(0.008) TCGA-E3-A3E3-01 19 10114384 10114384 G C COL5A3 Missense_Mutation p.Q236E 0.09 unknown(0) TCGA-E3-A3E3-01 1 152857286 152857286 G A SMCP 3'UTR 0.55 TCGA-E3-A3E3-01 1 34037304 34037304 A G CSMD2 Silent p.S2597S 0.29 TCGA-E3-A3E3-01 2 85663670 85663670 G C SH2D6 Missense_Mutation p.E165Q 0.18 tolerated(0.82) benign(0.011) TCGA-E3-A3E3-01 3 11058872 11058872 G T SLC6A1 5'UTR 0.45 TCGA-E3-A3E3-01 3 11058873 11058873 G T SLC6A1 5'UTR 0.45 TCGA-E3-A3E3-01 3 120941872 120941872 G C STXBP5L Missense_Mutation p.G327R 0.08 deleterious(0) probably_damaging(0.987) TCGA-E3-A3E3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-E3-A3E3-01 X 18969292 18969292 G T PHKA2 Missense_Mutation p.D128E 0.05 tolerated(0.1) benign(0.1) TCGA-E3-A3E3-01 X 44929202 44929202 A G KDM6A Missense_Mutation p.K768E 0.52 tolerated_low_confidence(0.69) benign(0.017) TCGA-E3-A3E3-01 X 55650462 55650462 C T FOXR2 Silent p.N106N 0.36 TCGA-E3-A3E5-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.38 TCGA-E3-A3E5-01 10 96702108 96702108 C T CYP2C9 Intron 0.04 TCGA-E3-A3E5-01 11 18421059 18421059 C G LDHA Missense_Mutation p.L99V 0.38 tolerated(0.16) benign(0.313) TCGA-E3-A3E5-01 11 8015971 8015971 A T EIF3F Splice_Site p.X218_splice 0.20 TCGA-E3-A3E5-01 17 37822184 37822184 C T TCAP Missense_Mutation p.T109I 0.47 deleterious(0.01) possibly_damaging(0.762) TCGA-E3-A3E5-01 18 14850291 14850291 T C ANKRD30B Silent p.L1039L 0.52 TCGA-E3-A3E5-01 19 41939275 41939276 GA - ATP5SL Frame_Shift_Del p.L172Qfs*72 0.11 TCGA-E3-A3E5-01 1 155658740 155658740 C T YY1AP1 5'Flank 0.12 TCGA-E3-A3E5-01 1 183208652 183208652 A G LAMC2 Missense_Mutation p.K1008R 0.37 tolerated(0.23) benign(0.003) TCGA-E3-A3E5-01 2 242179484 242179484 G C HDLBP Missense_Mutation p.F741L 0.41 deleterious(0) probably_damaging(0.973) TCGA-E3-A3E5-01 2 37227778 37227778 T C HEATR5B Silent p.T1832T 0.35 TCGA-E3-A3E5-01 3 38420767 38420767 C T XYLB Nonsense_Mutation p.R409* 0.51 TCGA-E3-A3E5-01 6 101253689 101253689 A G ASCC3 Missense_Mutation p.I290T 0.49 deleterious(0) benign(0.069) TCGA-E3-A3E5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-E3-A3E5-01 9 128099547 128099547 C T GAPVD1 Missense_Mutation p.H879Y 0.34 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-E8-A242-01 10 79580906 79580906 C T DLG5 Silent p.R1112R 0.06 TCGA-E8-A242-01 11 105924439 105924439 T C KBTBD3 Missense_Mutation p.Q326R 0.15 tolerated(0.36) benign(0.004) TCGA-E8-A242-01 12 29607866 29607866 C A OVCH1 Missense_Mutation p.G813V 0.11 deleterious(0) possibly_damaging(0.885) TCGA-E8-A242-01 12 56120932 56120932 C T CD63 Intron 0.09 TCGA-E8-A242-01 13 101795522 101795522 C G NALCN Missense_Mutation p.C676S 0.07 tolerated(0.76) benign(0.005) TCGA-E8-A242-01 14 31765218 31765218 G A RP11-596D21.1 Intron 0.15 TCGA-E8-A242-01 17 11726231 11726231 G T DNAH9 Missense_Mutation p.K3042N 0.05 probably_damaging(0.993) TCGA-E8-A242-01 18 56149135 56149135 T C ALPK2 Missense_Mutation p.I2145V 0.05 tolerated(1) benign(0.002) TCGA-E8-A242-01 20 36625191 36625191 G C TTI1 Silent p.V986V 0.22 TCGA-E8-A242-01 2 231264857 231264857 G A SP140L Missense_Mutation p.E405K 0.20 tolerated(0.09) possibly_damaging(0.467) TCGA-E8-A242-01 2 74784179 74784179 G A DOK1 Missense_Mutation p.D462N 0.08 deleterious_low_confidence(0.01) benign(0.01) TCGA-E8-A242-01 2 86705781 86705781 A G KDM3A Missense_Mutation p.I747V 0.11 deleterious(0) probably_damaging(0.977) TCGA-E8-A242-01 4 71024450 71024450 G A C4orf40 Missense_Mutation p.E161K 0.07 tolerated(0.89) unknown(0) TCGA-E8-A242-01 6 53989598 53989598 G T MLIP Missense_Mutation p.D183Y 0.07 deleterious(0.01) probably_damaging(0.971) TCGA-E8-A242-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-E8-A242-01 8 120575112 120575112 G T ENPP2 Missense_Mutation p.N854K 0.09 deleterious(0) probably_damaging(0.998) TCGA-E8-A242-01 X 150155679 150155679 G C HMGB3 Silent p.V123V 0.07 TCGA-E8-A2EA-01 10 3155654 3155654 G A PFKP Missense_Mutation p.D439N 0.29 tolerated(0.2) benign(0.001) TCGA-E8-A2EA-01 10 65379435 65379435 G C REEP3 Missense_Mutation p.D196H 0.16 tolerated(0.05) benign(0.027) TCGA-E8-A2EA-01 10 86130783 86130783 T C CCSER2 5'UTR 0.29 TCGA-E8-A2EA-01 12 4708955 4708955 G A DYRK4 Splice_Site p.X261_splice 0.24 TCGA-E8-A2EA-01 13 39541133 39541133 G A STOML3 Silent p.S235S 0.17 TCGA-E8-A2EA-01 13 78492364 78492364 C - EDNRB Frame_Shift_Del p.I206Sfs*8 0.09 TCGA-E8-A2EA-01 15 100332133 100332133 C T AC090825.1 5'Flank 0.11 TCGA-E8-A2EA-01 15 79069817 79069817 C G ADAMTS7 Missense_Mutation p.G479A 0.15 deleterious(0) possibly_damaging(0.831) TCGA-E8-A2EA-01 19 52376484 52376484 C A ZNF577 Silent p.R253R 0.29 TCGA-E8-A2EA-01 19 55112292 55112292 G C LILRA1 3'UTR 0.06 TCGA-E8-A2EA-01 19 56153901 56153901 C G ZNF580 Silent p.P9P 0.07 TCGA-E8-A2EA-01 20 52193757 52193757 A C ZNF217 Missense_Mutation p.Y516D 0.22 deleterious(0) probably_damaging(0.999) TCGA-E8-A2EA-01 22 37333582 37333582 C T CSF2RB Missense_Mutation p.H578Y 0.27 deleterious(0.01) benign(0.216) TCGA-E8-A2EA-01 4 38016200 38016200 C G TBC1D1 Missense_Mutation p.S163C 0.19 tolerated(0.06) benign(0.035) TCGA-E8-A2EA-01 4 39910084 39910084 G T PDS5A Silent p.A388A 0.30 TCGA-E8-A2EA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-E8-A2EA-01 8 25181418 25181418 C G DOCK5 Missense_Mutation p.P557R 0.24 tolerated(0.42) benign(0.006) TCGA-E8-A2EA-01 8 36698048 36698048 G A KCNU1 Missense_Mutation p.R529H 0.33 tolerated(0.39) benign(0.058) TCGA-E8-A2EA-01 X 153039673 153039673 G C PLXNB3 Missense_Mutation p.E1207D 0.24 tolerated(0.35) benign(0.018) TCGA-E8-A2JQ-01 10 93798 93798 G A TUBB8 Silent p.T178T 0.10 TCGA-E8-A2JQ-01 12 106734726 106734726 G A TCP11L2 Missense_Mutation p.G422D 0.07 deleterious(0) probably_damaging(1) TCGA-E8-A2JQ-01 12 113553841 113553841 G A RASAL1 Silent p.A249A 0.06 TCGA-E8-A2JQ-01 12 113553842 113553842 G A RASAL1 Missense_Mutation p.A249V 0.06 deleterious(0.01) possibly_damaging(0.905) TCGA-E8-A2JQ-01 12 4771757 4771757 C T NDUFA9 Missense_Mutation p.S204L 0.05 deleterious(0.03) benign(0.178) TCGA-E8-A2JQ-01 19 38896057 38896057 G C FAM98C Missense_Mutation p.R210T 0.06 deleterious(0.01) probably_damaging(0.932) TCGA-E8-A2JQ-01 19 41931682 41931682 G A B3GNT8 Silent p.D334D 0.07 TCGA-E8-A2JQ-01 19 52249646 52249646 C G FPR1 Missense_Mutation p.R201T 0.06 tolerated(0.31) benign(0.221) TCGA-E8-A2JQ-01 20 9449316 9449316 A G PLCB4 Missense_Mutation p.E1104G 0.23 deleterious(0) possibly_damaging(0.763) TCGA-E8-A2JQ-01 21 37785504 37785504 G A CHAF1B Missense_Mutation p.G462R 0.11 tolerated(0.51) benign(0.002) TCGA-E8-A2JQ-01 2 160087145 160087145 G C TANC1 Missense_Mutation p.Q1736H 0.07 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-E8-A2JQ-01 2 197298099 197298099 G A HECW2 Missense_Mutation p.P17S 0.06 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-E8-A2JQ-01 6 32159644 32159644 C T GPSM3 Missense_Mutation p.E63K 0.06 deleterious(0) probably_damaging(0.973) TCGA-E8-A2JQ-01 7 137801382 137801382 G A AKR1D1 Missense_Mutation p.E319K 0.09 tolerated(0.12) possibly_damaging(0.899) TCGA-E8-A2JQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-E8-A2JQ-01 8 36793506 36793506 G A KCNU1 3'UTR 0.19 TCGA-E8-A2JQ-01 9 134136313 134136313 G A FAM78A Missense_Mutation p.P250S 0.05 deleterious(0.03) benign(0.177) TCGA-E8-A2JQ-01 9 406991 406991 C T DOCK8 Missense_Mutation p.S1151F 0.05 tolerated(0.7) benign(0.139) TCGA-E8-A2JQ-01 X 123630900 123630900 G A TENM1 Missense_Mutation p.P1221S 0.06 deleterious(0.01) possibly_damaging(0.686) TCGA-E8-A2JQ-01 X 12940129 12940129 G C TLR8 Missense_Mutation p.L990F 0.05 tolerated(0.06) probably_damaging(0.996) TCGA-E8-A2JQ-01 X 49127085 49127085 G A PPP1R3F Silent p.E251E 0.09 TCGA-E8-A2JQ-01 X 73812337 73812337 C G RLIM Missense_Mutation p.L271F 0.06 tolerated(0.34) unknown(0) TCGA-E8-A3X7-01 10 49420143 49420143 T C FRMPD2 Missense_Mutation p.S489G 0.40 tolerated(1) benign(0.022) TCGA-E8-A3X7-01 14 31602596 31602596 G A HECTD1 Missense_Mutation p.A1257V 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-E8-A3X7-01 16 72830100 72830100 G A ZFHX3 Missense_Mutation p.R2161W 0.05 probably_damaging(0.999) TCGA-E8-A3X7-01 2 233899575 233899575 C A NEU2 Silent p.A317A 0.39 TCGA-E8-A3X7-01 5 36971021 36971021 A G NIPBL Missense_Mutation p.I218M 0.24 tolerated_low_confidence(0.07) benign(0.006) TCGA-E8-A3X7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.20 deleterious(0) probably_damaging(0.967) TCGA-E8-A3X7-01 9 108145604 108145604 C G SLC44A1 Missense_Mutation p.S611R 0.40 deleterious(0) probably_damaging(0.971) TCGA-E8-A3X7-01 9 8331609 8331609 T C PTPRD Missense_Mutation p.Q1836R 0.35 deleterious(0) probably_damaging(0.977) TCGA-E8-A3X7-01 X 102528908 102528908 C T TCEAL5 Missense_Mutation p.R195K 0.07 tolerated(0.17) benign(0.13) TCGA-E8-A3X7-01 X 48814577 48814577 G A OTUD5 Missense_Mutation p.P86S 0.15 tolerated_low_confidence(0.08) unknown(0) TCGA-E8-A413-01 13 41949684 41949684 T G NAA16 Silent p.P847P 0.26 TCGA-E8-A413-01 13 46559772 46559772 A G ZC3H13 Silent p.D460D 0.04 TCGA-E8-A413-01 14 50550617 50550617 C T C14orf183 Missense_Mutation p.G243S 0.09 tolerated_low_confidence(0.97) probably_damaging(0.935) TCGA-E8-A413-01 15 85478621 85478621 G A SLC28A1 Missense_Mutation p.V485I 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-E8-A413-01 19 54204492 54204492 G A MIR520B RNA 0.05 TCGA-E8-A413-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-E8-A414-01 12 49229903 49229903 C T DDX23 Splice_Site p.X461_splice 0.22 TCGA-E8-A414-01 19 12940686 12940686 G T RTBDN Silent p.A68A 0.21 TCGA-E8-A414-01 1 158615133 158615133 C T SPTA1 Missense_Mutation p.A1347T 0.31 tolerated(0.05) possibly_damaging(0.533) TCGA-E8-A414-01 1 9777593 9777593 A G PIK3CD Splice_Site p.X311_splice 0.21 TCGA-E8-A414-01 22 36122619 36122619 G A APOL5 Missense_Mutation p.M168I 0.20 tolerated(0.34) benign(0.01) TCGA-E8-A414-01 2 42510053 42510053 A G EML4 Silent p.L294L 0.06 TCGA-E8-A414-01 5 169108863 169108863 G C DOCK2 Missense_Mutation p.E196Q 0.05 tolerated(0.19) benign(0.175) TCGA-E8-A414-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.14 deleterious(0) probably_damaging(0.967) TCGA-E8-A415-01 15 22956381 22956381 A T CYFIP1 Intron 0.18 TCGA-E8-A415-01 17 8216353 8216353 C T ARHGEF15 Missense_Mutation p.R239C 0.06 tolerated_low_confidence(1) benign(0) TCGA-E8-A415-01 1 144854644 144854644 C T PDE4DIP Missense_Mutation p.E2276K 0.12 tolerated(1) benign(0.002) TCGA-E8-A415-01 2 32476199 32476199 A G NLRC4 Missense_Mutation p.F245S 0.12 deleterious(0) probably_damaging(1) TCGA-E8-A415-01 3 183903993 183903993 A T ABCF3 5'UTR 0.28 TCGA-E8-A415-01 5 148624541 148624541 G A ABLIM3 Silent p.S483S 0.07 TCGA-E8-A415-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.20 deleterious(0) probably_damaging(0.967) TCGA-E8-A415-01 7 34698077 34698077 C T NPSR1 Missense_Mutation p.T18M 0.26 tolerated(0.18) benign(0.004) TCGA-E8-A415-01 9 139915257 139915257 T C ABCA2 Missense_Mutation p.E385G 0.20 tolerated_low_confidence(0.2) benign(0.006) TCGA-E8-A415-01 9 97062729 97062729 C T ZNF169 Nonsense_Mutation p.R297* 0.20 TCGA-E8-A415-01 X 109943904 109943904 C T CHRDL1 Missense_Mutation p.R196Q 0.06 tolerated(0.25) possibly_damaging(0.556) TCGA-E8-A415-01 X 56592023 56592023 C T UBQLN2 Missense_Mutation p.P573S 0.19 tolerated(0.86) unknown(0) TCGA-E8-A416-01 12 15038822 15038822 A G MGP 5'Flank 0.20 TCGA-E8-A417-01 10 129906793 129906793 C G MKI67 Missense_Mutation p.G1104A 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-E8-A417-01 11 22261130 22261130 C T ANO5 Missense_Mutation p.P260S 0.12 tolerated(0.15) benign(0.043) TCGA-E8-A417-01 12 52757867 52757867 C - KRT85 Frame_Shift_Del p.R257Sfs*21 0.08 TCGA-E8-A417-01 12 93181726 93181726 T C EEA1 Missense_Mutation p.K1023E 0.14 tolerated(0.22) benign(0.005) TCGA-E8-A417-01 13 111367947 111367947 G T ING1 Missense_Mutation p.D53Y 0.16 deleterious_low_confidence(0.01) benign(0.003) TCGA-E8-A417-01 15 44176008 44176008 C G FRMD5 Splice_Site p.X343_splice 0.14 TCGA-E8-A417-01 15 53815440 53815440 A T WDR72 Nonsense_Mutation p.C1076* 0.22 TCGA-E8-A417-01 15 79058901 79058901 C T ADAMTS7 Missense_Mutation p.A1118T 0.08 tolerated(0.69) benign(0.035) TCGA-E8-A417-01 16 72830938 72830938 G A ZFHX3 Silent p.V1881V 0.17 TCGA-E8-A417-01 17 66928503 66928503 A C ABCA8 Silent p.S241S 0.10 TCGA-E8-A417-01 19 36051822 36051822 T C ATP4A Missense_Mutation p.I145V 0.09 tolerated(0.53) benign(0) TCGA-E8-A417-01 19 49254054 49254054 A G FUT1 Missense_Mutation p.L162P 0.10 tolerated(0.05) probably_damaging(0.992) TCGA-E8-A417-01 1 18807628 18807628 T C KLHDC7A Silent p.N51N 0.12 TCGA-E8-A417-01 1 207741322 207741322 G T CR1 Missense_Mutation p.R1369L 0.06 tolerated(0.62) possibly_damaging(0.456) TCGA-E8-A417-01 20 49510462 49510462 G C ADNP Silent p.P263P 0.06 TCGA-E8-A417-01 20 51871941 51871941 G C TSHZ2 Silent p.L648L 0.05 TCGA-E8-A417-01 22 42154399 42154399 A T MEI1 Missense_Mutation p.H661L 0.12 tolerated(0.29) benign(0.006) TCGA-E8-A417-01 2 137814301 137814301 C T THSD7B Nonsense_Mutation p.R151* 0.18 TCGA-E8-A417-01 2 169801203 169801203 C A ABCB11 Missense_Mutation p.G841V 0.06 deleterious(0.03) possibly_damaging(0.789) TCGA-E8-A417-01 2 179482973 179482973 C G TTN Missense_Mutation p.V15738L 0.07 TCGA-E8-A417-01 2 242742868 242742868 C T GAL3ST2 Missense_Mutation p.R162W 0.17 deleterious(0.04) possibly_damaging(0.863) TCGA-E8-A417-01 3 183975407 183975407 C T ECE2 Missense_Mutation p.R115W 0.38 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-E8-A417-01 5 32058048 32058048 C G PDZD2 Missense_Mutation p.P680R 0.12 deleterious(0) probably_damaging(1) TCGA-E8-A417-01 5 54565249 54565249 C T DHX29 Missense_Mutation p.D1096N 0.09 deleterious(0.02) possibly_damaging(0.513) TCGA-E8-A417-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-E8-A417-01 8 131249199 131249199 C A ASAP1 Missense_Mutation p.K76N 0.20 deleterious(0) probably_damaging(0.95) TCGA-E8-A417-01 8 53571499 53571499 T C RB1CC1 Missense_Mutation p.D576G 0.22 deleterious(0.03) probably_damaging(0.998) TCGA-E8-A417-01 9 127765811 127765811 C T SCAI Missense_Mutation p.M323I 0.18 tolerated(0.14) benign(0.188) TCGA-E8-A417-01 9 86616420 86616420 A G RMI1 Missense_Mutation p.I173M 0.07 tolerated(0.14) benign(0.179) TCGA-E8-A417-01 X 100510212 100510212 T A DRP2 Missense_Mutation p.N740K 0.03 deleterious(0.04) benign(0.024) TCGA-E8-A418-01 11 1029335 1029335 C G MUC6 Missense_Mutation p.E390Q 0.34 unknown(0) TCGA-E8-A418-01 11 105880518 105880518 C T MSANTD4 Missense_Mutation p.R261K 0.38 tolerated(0.42) benign(0.064) TCGA-E8-A418-01 11 118377159 118377159 T G KMT2A Missense_Mutation p.S3518A 0.40 benign(0.04) TCGA-E8-A418-01 11 118377160 118377160 C T KMT2A Missense_Mutation p.S3518F 0.41 benign(0.438) TCGA-E8-A418-01 11 34938261 34938261 T G PDHX Missense_Mutation p.F20C 0.41 deleterious_low_confidence(0) benign(0.293) TCGA-E8-A418-01 11 49831624 49831624 T C RP11-707M1.1 RNA 0.45 TCGA-E8-A418-01 11 68369335 68369335 A G PPP6R3 Missense_Mutation p.K733E 0.40 tolerated(1) benign(0.341) TCGA-E8-A418-01 11 68582878 68582878 C T CPT1A Missense_Mutation p.R22Q 0.16 tolerated(0.97) benign(0.002) TCGA-E8-A418-01 12 101017896 101017896 C T GAS2L3 Missense_Mutation p.S438F 0.04 tolerated(0.06) benign(0.037) TCGA-E8-A418-01 12 71056321 71056321 C T PTPRR Missense_Mutation p.S521N 0.34 tolerated(0.42) benign(0.001) TCGA-E8-A418-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.31 deleterious(0) probably_damaging(0.999) TCGA-E8-A418-01 15 25475840 25475840 G A SNORD115-33 5'Flank 0.15 TCGA-E8-A418-01 15 34649404 34649404 C T NUTM1 Silent p.L1037L 0.42 TCGA-E8-A418-01 15 93567883 93567883 C T CHD2 Missense_Mutation p.S1812L 0.05 deleterious_low_confidence(0.04) benign(0.38) TCGA-E8-A418-01 16 30666042 30666042 C T PRR14 Missense_Mutation p.R251C 0.04 tolerated(0.07) benign(0.048) TCGA-E8-A418-01 16 46998681 46998681 C T DNAJA2 Missense_Mutation p.E206K 0.36 tolerated(0.77) benign(0.003) TCGA-E8-A418-01 17 58740540 58740544 TGACT - PPM1D Frame_Shift_Del p.T483Kfs*4 0.39 TCGA-E8-A418-01 18 67673627 67673627 T C RTTN Missense_Mutation p.N2172S 0.50 deleterious(0) possibly_damaging(0.84) TCGA-E8-A418-01 19 10262175 10262175 C T DNMT1 Missense_Mutation p.D722N 0.10 tolerated(0.09) benign(0.244) TCGA-E8-A418-01 19 38976630 38976630 C G RYR1 Missense_Mutation p.P1779A 0.42 benign(0.011) TCGA-E8-A418-01 19 49132445 49132445 T C SPHK2 Silent p.A460A 0.41 TCGA-E8-A418-01 1 17559436 17559436 C T PADI1 Silent p.G428G 0.47 TCGA-E8-A418-01 1 19953023 19953023 C T MINOS1 3'UTR 0.33 TCGA-E8-A418-01 1 2334476 2334476 C T RER1 Silent p.H168H 0.33 TCGA-E8-A418-01 20 25656710 25656710 A G ZNF337 Missense_Mutation p.V405A 0.40 tolerated(0.7) benign(0.418) TCGA-E8-A418-01 22 41077325 41077325 C A MCHR1 Missense_Mutation p.T221K 0.32 tolerated(0.11) possibly_damaging(0.705) TCGA-E8-A418-01 3 119210390 119210390 A G POGLUT1 Missense_Mutation p.N331D 0.33 deleterious(0.02) possibly_damaging(0.897) TCGA-E8-A418-01 3 38087109 38087109 G C DLEC1 Missense_Mutation p.A163P 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-E8-A418-01 4 100232046 100232046 C G ADH1B Missense_Mutation p.E327Q 0.38 deleterious(0.05) benign(0.108) TCGA-E8-A418-01 4 5755545 5755545 C A EVC Missense_Mutation p.A450E 0.44 tolerated(0.57) benign(0.096) TCGA-E8-A418-01 5 45262720 45262720 C T HCN1 Missense_Mutation p.R659H 0.47 tolerated_low_confidence(0.67) benign(0.212) TCGA-E8-A418-01 5 95728775 95728775 G A PCSK1 Missense_Mutation p.T731I 0.08 tolerated_low_confidence(0.24) benign(0.01) TCGA-E8-A418-01 6 159084268 159084268 C A SYTL3 5'UTR 0.47 TCGA-E8-A418-01 6 42830261 42830261 C G GLTSCR1L Missense_Mutation p.S788C 0.05 deleterious(0) probably_damaging(0.937) TCGA-E8-A418-01 7 122821049 122821049 A T SLC13A1 Missense_Mutation p.F69Y 0.50 deleterious(0.02) benign(0.17) TCGA-E8-A418-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-E8-A418-01 7 1527562 1527562 C T INTS1 Missense_Mutation p.D784N 0.02 deleterious(0.05) benign(0.045) TCGA-E8-A418-01 8 134232918 134232918 C T WISP1 Silent p.D148D 0.34 TCGA-E8-A418-01 8 19677984 19677984 G T INTS10 Missense_Mutation p.L132F 0.34 deleterious(0.01) probably_damaging(0.931) TCGA-E8-A418-01 9 71395286 71395286 A G FAM122A Missense_Mutation p.H69R 0.36 tolerated(0.13) benign(0.029) TCGA-E8-A418-01 9 84563823 84563823 A G RP11-383M4.6 Intron 0.27 TCGA-E8-A418-01 X 102754896 102754896 C T RAB40A Silent p.Q263Q 0.03 TCGA-E8-A419-01 11 118379887 118379887 A C KMT2A Missense_Mutation p.Q3624H 0.11 possibly_damaging(0.646) TCGA-E8-A419-01 11 3877416 3877416 G A STIM1 5'UTR 0.37 TCGA-E8-A419-01 12 64746822 64746822 C T C12orf56 Silent p.P89P 0.22 TCGA-E8-A419-01 16 76495940 76495940 C G CNTNAP4 Missense_Mutation p.A401G 0.10 tolerated(0.22) benign(0.062) TCGA-E8-A419-01 17 27895763 27895763 C T TP53I13 5'UTR 0.31 TCGA-E8-A419-01 19 44564909 44564909 A G ZNF223 Silent p.Q50Q 0.28 TCGA-E8-A419-01 3 197723067 197723067 G A LMLN Missense_Mutation p.D357N 0.11 tolerated(1) benign(0.002) TCGA-E8-A419-01 4 139966572 139966572 C G CCRN4L Missense_Mutation p.H414D 0.25 deleterious(0) probably_damaging(1) TCGA-E8-A419-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-E8-A419-01 8 8750018 8750018 C T MFHAS1 Missense_Mutation p.R184H 0.22 deleterious(0.01) probably_damaging(0.95) TCGA-E8-A419-01 9 91628470 91628470 G T SHC3 Silent p.V559V 0.08 TCGA-E8-A432-01 11 111228203 111228203 G A POU2AF1 Silent p.T141T 0.18 TCGA-E8-A432-01 11 55541674 55541674 A G OR5D13 Missense_Mutation p.H254R 0.29 deleterious(0) probably_damaging(0.934) TCGA-E8-A432-01 11 62744805 62744805 G C SLC22A6 Missense_Mutation p.S472R 0.16 deleterious(0) probably_damaging(1) TCGA-E8-A432-01 11 65272954 65272954 C T MALAT1 RNA 0.16 TCGA-E8-A432-01 11 65484145 65484145 C - KAT5 Frame_Shift_Del p.Q347Rfs*28 0.25 TCGA-E8-A432-01 12 49445334 49445334 G A KMT2D Missense_Mutation p.P711L 0.17 unknown(0) TCGA-E8-A432-01 12 5603343 5603343 C T NTF3 Intron 0.07 TCGA-E8-A432-01 13 46549950 46549950 G A ZC3H13 Nonsense_Mutation p.R646* 0.29 TCGA-E8-A432-01 15 24921341 24921341 A G NPAP1 Silent p.G109G 0.12 TCGA-E8-A432-01 15 85383174 85383174 C T ALPK3 Nonsense_Mutation p.Q424* 0.21 TCGA-E8-A432-01 17 8790952 8790952 C A PIK3R5 Missense_Mutation p.Q555H 0.20 deleterious(0.05) possibly_damaging(0.568) TCGA-E8-A432-01 19 12087920 12087920 C T ZNF763 Missense_Mutation p.S27L 0.32 tolerated(0.06) benign(0.033) TCGA-E8-A432-01 1 197871974 197871974 G A C1orf53 Silent p.R65R 0.40 TCGA-E8-A432-01 1 3542033 3542033 C T TPRG1L Missense_Mutation p.R83W 0.24 deleterious(0.02) possibly_damaging(0.809) TCGA-E8-A432-01 1 38281129 38281129 G T MTF1 Silent p.S647S 0.10 TCGA-E8-A432-01 1 63044512 63044512 G A DOCK7 Missense_Mutation p.P666L 0.11 tolerated(1) benign(0.109) TCGA-E8-A432-01 2 179399347 179399347 A T TTN Missense_Mutation p.W33999R 0.22 TCGA-E8-A432-01 3 136574141 136574143 AGA - SLC35G2 In_Frame_Del p.K281del 0.24 TCGA-E8-A432-01 3 155311968 155311968 T A PLCH1 Missense_Mutation p.I66F 0.35 deleterious(0) probably_damaging(0.999) TCGA-E8-A432-01 5 135416184 135416184 A G VTRNA2-1 RNA 0.31 TCGA-E8-A432-01 5 140221992 140221992 C T PCDHA8 Silent p.D362D 0.26 TCGA-E8-A432-01 5 31983589 31983589 G A PDZD2 Missense_Mutation p.G269S 0.28 tolerated(0.08) possibly_damaging(0.599) TCGA-E8-A432-01 5 94891099 94891099 C T ARSK Silent p.S39S 0.17 TCGA-E8-A432-01 5 96358148 96358148 A G LNPEP Missense_Mutation p.K841E 0.32 tolerated(1) benign(0.002) TCGA-E8-A432-01 6 26452015 26452015 A T BTN3A3 Missense_Mutation p.R377S 0.17 deleterious(0) probably_damaging(1) TCGA-E8-A432-01 6 35255551 35255551 G T ZNF76 Missense_Mutation p.D121Y 0.22 tolerated(0.06) possibly_damaging(0.502) TCGA-E8-A432-01 7 91503312 91503312 T C MTERF Missense_Mutation p.N266D 0.11 tolerated(0.33) benign(0.002) TCGA-E8-A433-01 10 127843851 127843851 G A ADAM12 Missense_Mutation p.T95M 0.35 deleterious(0.01) possibly_damaging(0.532) TCGA-E8-A433-01 11 102819790 102819790 C T MMP13 Missense_Mutation p.E339K 0.27 deleterious(0.01) probably_damaging(1) TCGA-E8-A433-01 11 124539274 124539274 T C SIAE Missense_Mutation p.K71E 0.37 tolerated(0.1) benign(0.009) TCGA-E8-A433-01 12 40702485 40702485 G - LRRK2 Frame_Shift_Del p.W1393Gfs*17 0.20 TCGA-E8-A433-01 17 38508725 38508726 - A RARA Frame_Shift_Ins p.T259Hfs*65 0.23 TCGA-E8-A433-01 19 49610890 49610890 C T SNRNP70 Missense_Mutation p.L196F 0.35 deleterious(0) probably_damaging(0.991) TCGA-E8-A433-01 2 198299704 198299704 G A SF3B1 Missense_Mutation p.T7I 0.29 deleterious_low_confidence(0.01) benign(0.018) TCGA-E8-A433-01 2 9463376 9463376 C T ASAP2 Silent p.C199C 0.28 TCGA-E8-A433-01 5 140208982 140208982 T A PCDHA6 Missense_Mutation p.W436R 0.37 tolerated_low_confidence(0.42) benign(0.092) TCGA-E8-A433-01 5 176301124 176301124 T C UNC5A Missense_Mutation p.F348L 0.05 deleterious(0.01) probably_damaging(0.986) TCGA-E8-A433-01 6 50796357 50796357 G A TFAP2B Missense_Mutation p.G189D 0.04 tolerated(0.07) benign(0.142) TCGA-E8-A433-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-E8-A433-01 8 56866442 56866442 A G LYN Missense_Mutation p.K230R 0.36 tolerated(0.11) benign(0.001) TCGA-E8-A434-01 19 2039729 2039729 G T MKNK2 Silent p.V427V 0.28 TCGA-E8-A434-01 1 155186821 155186821 C T MTX1 3'Flank 0.33 TCGA-E8-A434-01 2 20402576 20402576 T C SDC1 Missense_Mutation p.N295S 0.26 deleterious(0) probably_damaging(0.999) TCGA-E8-A434-01 4 153247321 153247321 A C FBXW7 Nonsense_Mutation p.L494* 0.24 TCGA-E8-A434-01 5 154394835 154394835 G T KIF4B Silent p.L472L 0.22 TCGA-E8-A434-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-E8-A434-01 X 79698776 79698776 C A FAM46D Silent p.G246G 0.30 TCGA-E8-A436-01 11 55579597 55579597 C A OR5L1 Missense_Mutation p.L219M 0.24 deleterious(0.03) benign(0.292) TCGA-E8-A436-01 11 639536 639536 G T DRD4 Missense_Mutation p.S130I 0.18 deleterious(0) unknown(0) TCGA-E8-A436-01 12 123201154 123201154 C T HCAR3 Missense_Mutation p.G44D 0.16 deleterious(0) probably_damaging(1) TCGA-E8-A436-01 12 18890367 18890367 C T PLCZ1 5'UTR 0.38 TCGA-E8-A436-01 12 43826126 43826126 G A ADAMTS20 Missense_Mutation p.A1026V 0.11 tolerated(0.27) benign(0.017) TCGA-E8-A436-01 14 96887171 96887171 G A AK7 Missense_Mutation p.V171I 0.36 tolerated(1) benign(0.002) TCGA-E8-A436-01 16 70500883 70500883 C T FUK Intron 0.16 TCGA-E8-A436-01 19 51022055 51022055 G A LRRC4B Silent p.R305R 0.11 TCGA-E8-A436-01 1 183849863 183849863 C T RGL1 Missense_Mutation p.P215L 0.15 deleterious(0.04) possibly_damaging(0.871) TCGA-E8-A436-01 1 34087848 34087848 T C CSMD2 Missense_Mutation p.N1876D 0.19 deleterious(0) probably_damaging(0.988) TCGA-E8-A436-01 1 46867852 46867852 C G FAAH Silent p.A95A 0.38 TCGA-E8-A436-01 1 68619274 68619274 G A WLS Silent p.P241P 0.31 TCGA-E8-A436-01 21 45819240 45819240 G A TRPM2 Silent p.V708V 0.14 TCGA-E8-A436-01 22 31927094 31927094 G C SFI1 Missense_Mutation p.R106T 0.24 deleterious(0.01) possibly_damaging(0.758) TCGA-E8-A436-01 3 49042565 49042565 C G P4HTM Missense_Mutation p.P387A 0.19 tolerated_low_confidence(0.58) possibly_damaging(0.728) TCGA-E8-A436-01 7 140155658 140155658 T A MKRN1 Silent p.P343P 0.24 TCGA-E8-A436-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-E8-A436-01 7 63982234 63982234 G C ZNF680 Missense_Mutation p.H300D 0.19 deleterious(0.05) benign(0.288) TCGA-E8-A437-01 10 98806446 98806446 G A SLIT1 Silent p.S606S 0.38 TCGA-E8-A437-01 11 77412844 77412844 T C RSF1 Missense_Mutation p.D477G 0.30 tolerated_low_confidence(0.09) benign(0.005) TCGA-E8-A437-01 12 41966816 41966816 C T PDZRN4 Silent p.C745C 0.39 TCGA-E8-A437-01 15 34549844 34549844 C A SLC12A6 Missense_Mutation p.C230F 0.27 deleterious(0) probably_damaging(1) TCGA-E8-A437-01 15 52652211 52652211 A C MYO5A Missense_Mutation p.F1126C 0.52 tolerated(0.18) possibly_damaging(0.571) TCGA-E8-A437-01 16 70432116 70432116 C T ST3GAL2 Silent p.P106P 0.05 TCGA-E8-A437-01 18 56246284 56246284 A G ALPK2 Missense_Mutation p.L575P 0.32 tolerated(0.05) benign(0.051) TCGA-E8-A437-01 19 38230588 38230588 T A ZNF573 Missense_Mutation p.H268L 0.35 deleterious(0) probably_damaging(0.989) TCGA-E8-A437-01 19 54545172 54545172 G A VSTM1 Missense_Mutation p.A184V 0.06 tolerated(0.17) benign(0.04) TCGA-E8-A437-01 19 7622115 7622115 C T PNPLA6 Silent p.C1124C 0.06 TCGA-E8-A437-01 20 3204049 3204049 T G ITPA Missense_Mutation p.S176A 0.19 deleterious(0) probably_damaging(1) TCGA-E8-A437-01 2 187541588 187541588 C A ITGAV Missense_Mutation p.P993T 0.28 deleterious(0) probably_damaging(0.963) TCGA-E8-A437-01 2 201718131 201718131 A G CLK1 Silent p.F493F 0.33 TCGA-E8-A437-01 6 49754598 49754598 G A PGK2 Silent p.G101G 0.13 TCGA-E8-A437-01 7 140453135 140453135 C T BRAF Silent p.V600V 0.22 TCGA-E8-A437-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-E8-A437-01 9 135865148 135865148 G A GFI1B Missense_Mutation p.R223H 0.09 deleterious(0.01) benign(0.017) TCGA-E8-A437-01 X 110951452 110951452 C T ALG13 Missense_Mutation p.P194L 0.09 tolerated_low_confidence(0.16) benign(0) TCGA-E8-A437-01 X 18234789 18234789 T A BEND2 Missense_Mutation p.E30D 0.11 tolerated_low_confidence(0.3) benign(0.341) TCGA-E8-A437-01 X 37931394 37931394 T A SYTL5 Missense_Mutation p.S142T 0.10 tolerated(0.14) possibly_damaging(0.541) TCGA-E8-A438-01 11 74904577 74904577 G A SLCO2B1 Missense_Mutation p.G464S 0.35 deleterious(0) probably_damaging(1) TCGA-E8-A438-01 12 81110848 81110848 C T MYF5 Silent p.D2D 0.13 TCGA-E8-A438-01 17 8791970 8791970 G A PIK3R5 Silent p.S378S 0.21 TCGA-E8-A438-01 19 17441651 17441651 G A ANO8 Missense_Mutation p.R327C 0.34 deleterious(0) probably_damaging(1) TCGA-E8-A438-01 1 157665945 157665945 C T FCRL3 Silent p.L339L 0.27 TCGA-E8-A438-01 4 119810267 119810267 G A SYNPO2 Missense_Mutation p.E26K 0.35 deleterious(0.01) possibly_damaging(0.877) TCGA-E8-A438-01 4 122770040 122770040 C T BBS7 Missense_Mutation p.G298E 0.32 deleterious(0) benign(0.425) TCGA-E8-A438-01 4 84347206 84347206 T A HELQ Missense_Mutation p.I906F 0.07 tolerated(0.14) benign(0.002) TCGA-E8-A438-01 6 134495977 134495977 G C SGK1 Intron 0.42 TCGA-E8-A44K-01 17 56557351 56557351 T C HSF5 Silent p.V276V 0.40 TCGA-E8-A44K-01 19 10747102 10747102 A T SLC44A2 Missense_Mutation p.Q446L 0.32 deleterious(0) possibly_damaging(0.477) TCGA-E8-A44K-01 19 45998115 45998115 C G RTN2 Silent p.G76G 0.38 TCGA-E8-A44K-01 19 56153895 56153895 G A ZNF580 Silent p.R7R 0.15 TCGA-E8-A44K-01 1 223176363 223176363 T G DISP1 Missense_Mutation p.S542A 0.33 tolerated(0.26) benign(0.139) TCGA-E8-A44K-01 1 231411174 231411174 T A GNPAT Missense_Mutation p.L623I 0.06 deleterious(0) probably_damaging(0.998) TCGA-E8-A44K-01 1 45797891 45797891 G A MUTYH Missense_Mutation p.R291C 0.07 tolerated(0.06) possibly_damaging(0.448) TCGA-E8-A44K-01 22 38120673 38120673 G A TRIOBP Missense_Mutation p.D704N 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.539) TCGA-E8-A44K-01 7 128097605 128097605 C T HILPDA 3'UTR 0.42 TCGA-E8-A44K-01 7 140394532 140394532 C T ADCK2 Silent p.L604L 0.30 TCGA-E8-A44K-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-E8-A44K-01 7 72657233 72657233 C T GTF2IRD2P1 RNA 0.23 TCGA-E8-A44K-01 9 16435992 16435992 C A BNC2 Missense_Mutation p.G734C 0.15 tolerated(0.09) benign(0) TCGA-E8-A44M-01 10 27539638 27539638 T C RP11-85G18.6 RNA 0.17 TCGA-E8-A44M-01 19 6309777 6309777 G A ACER1 Missense_Mutation p.T140M 0.06 deleterious(0.03) benign(0.298) TCGA-E8-A44M-01 20 19998558 19998558 C G NAA20 Intron 0.37 TCGA-E8-A44M-01 2 17954536 17954536 G A GEN1 Silent p.R347R 0.17 TCGA-E8-A44M-01 2 242572861 242572861 C T THAP4 Silent p.S237S 0.06 TCGA-E8-A44M-01 5 148743769 148743769 A G PCYOX1L Missense_Mutation p.M156V 0.17 deleterious(0.01) possibly_damaging(0.779) TCGA-E8-A44M-01 6 27791917 27791917 C T HIST1H4J Silent p.G5G 0.11 TCGA-E8-A44M-01 7 150325517 150325517 C A GIMAP6 Nonsense_Mutation p.G57* 0.18 TCGA-EL-A3CL-01 14 33291666 33291666 A G AKAP6 Silent p.T1549T 0.06 TCGA-EL-A3CL-01 16 72827620 72827621 - T ZFHX3 Frame_Shift_Ins p.R2988Efs*33 0.26 TCGA-EL-A3CL-01 17 40269530 40269530 C T KAT2A Missense_Mutation p.G505S 0.42 tolerated(0.15) possibly_damaging(0.602) TCGA-EL-A3CL-01 19 1037875 1037875 C G CNN2 Nonsense_Mutation p.Y302* 0.30 TCGA-EL-A3CL-01 1 41979174 41979174 G A HIVEP3 Silent p.P1906P 0.44 TCGA-EL-A3CL-01 20 61039965 61039965 G A GATA5 Missense_Mutation p.T374M 0.08 tolerated(0.11) benign(0.039) TCGA-EL-A3CL-01 21 41711101 41711101 G A DSCAM Silent p.C484C 0.34 TCGA-EL-A3CL-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CL-01 7 92760593 92760596 TCTT - SAMD9L Frame_Shift_Del p.R1564Cfs*5 0.40 TCGA-EL-A3CL-01 9 140446894 140446894 C T MRPL41 Missense_Mutation p.P121S 0.29 deleterious(0.04) possibly_damaging(0.544) TCGA-EL-A3CM-01 10 101558994 101558994 G A ABCC2 Missense_Mutation p.G300R 0.11 tolerated(0.13) benign(0.005) TCGA-EL-A3CM-01 10 91174530 91174530 C T IFIT5 5'UTR 0.27 TCGA-EL-A3CM-01 11 17432134 17432134 G A ABCC8 Silent p.L875L 0.06 TCGA-EL-A3CM-01 12 102314992 102314992 A G DRAM1 Splice_Site p.X225_splice 0.07 TCGA-EL-A3CM-01 12 120263094 120263094 C T CIT Missense_Mutation p.G278S 0.07 tolerated(0.48) benign(0.014) TCGA-EL-A3CM-01 15 69708349 69708349 C T KIF23 Missense_Mutation p.R10W 0.16 deleterious(0) possibly_damaging(0.884) TCGA-EL-A3CM-01 15 81592023 81592023 G A IL16 Missense_Mutation p.A786T 0.18 deleterious(0) probably_damaging(1) TCGA-EL-A3CM-01 17 30687676 30687676 G A ZNF207 Missense_Mutation p.A123T 0.08 tolerated(0.14) possibly_damaging(0.682) TCGA-EL-A3CM-01 3 51664942 51664942 C A RAD54L2 Missense_Mutation p.H274N 0.29 deleterious(0) probably_damaging(1) TCGA-EL-A3CM-01 3 9965966 9965966 C T IL17RC Silent p.L342L 0.14 TCGA-EL-A3CM-01 6 10894210 10894210 A T SYCP2L Missense_Mutation p.L63F 0.26 tolerated(0.37) benign(0.333) TCGA-EL-A3CM-01 6 7393347 7393347 G C RIOK1 Missense_Mutation p.L29F 0.08 tolerated_low_confidence(0.16) benign(0.003) TCGA-EL-A3CM-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CM-01 9 99113432 99113432 G A SLC35D2 Silent p.I147I 0.34 TCGA-EL-A3CM-01 X 48974115 48974115 C A GPKOW Missense_Mutation p.G206C 0.20 deleterious(0) probably_damaging(1) TCGA-EL-A3CN-01 10 20106093 20106093 G A PLXDC2 Missense_Mutation p.D29N 0.17 tolerated_low_confidence(0.22) benign(0.009) TCGA-EL-A3CN-01 11 93103317 93103317 C T CCDC67 Nonsense_Mutation p.Q171* 0.31 TCGA-EL-A3CN-01 13 52548923 52548923 C A ATP7B Missense_Mutation p.V145F 0.22 deleterious(0.01) possibly_damaging(0.495) TCGA-EL-A3CN-01 14 20666079 20666079 G A OR11G2 Silent p.L195L 0.10 TCGA-EL-A3CN-01 14 59791100 59791100 A G DAAM1 Missense_Mutation p.Y306C 0.29 deleterious(0) unknown(0) TCGA-EL-A3CN-01 16 2283889 2283889 G A E4F1 Missense_Mutation p.A425T 0.11 tolerated(0.23) benign(0.002) TCGA-EL-A3CN-01 17 48678432 48678432 G A CACNA1G Missense_Mutation p.R1271Q 0.31 tolerated(0.1) benign(0.397) TCGA-EL-A3CN-01 19 38959719 38959719 C T RYR1 Silent p.G1165G 0.09 TCGA-EL-A3CN-01 19 57175562 57175562 C G ZNF835 Silent p.A335A 0.14 TCGA-EL-A3CN-01 19 6702224 6702224 C A C3 Splice_Site p.X785_splice 0.37 TCGA-EL-A3CN-01 1 2268277 2268277 G A MORN1 Missense_Mutation p.A350V 0.08 tolerated(0.23) benign(0.014) TCGA-EL-A3CN-01 3 123383036 123383036 G A MYLK Missense_Mutation p.R1301C 0.12 tolerated(0.08) benign(0.005) TCGA-EL-A3CN-01 3 52019429 52019429 C T ACY1 Missense_Mutation p.T71I 0.31 deleterious(0.05) benign(0.009) TCGA-EL-A3CN-01 4 184930711 184930711 C A STOX2 Missense_Mutation p.S240R 0.07 deleterious(0.03) possibly_damaging(0.756) TCGA-EL-A3CN-01 5 31401395 31401395 T C DROSHA 3'UTR 0.27 TCGA-EL-A3CN-01 6 117859981 117859981 A G DCBLD1 Missense_Mutation p.E320G 0.11 deleterious(0) possibly_damaging(0.607) TCGA-EL-A3CN-01 6 51619708 51619708 G A PKHD1 Missense_Mutation p.R2891C 0.12 deleterious(0.01) possibly_damaging(0.696) TCGA-EL-A3CN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CN-01 9 131777178 131777178 T C SH3GLB2 Missense_Mutation p.T114A 0.30 tolerated(1) benign(0.126) TCGA-EL-A3CN-01 X 100382562 100382562 A T CENPI Missense_Mutation p.S328C 0.32 tolerated(0.1) possibly_damaging(0.813) TCGA-EL-A3CO-01 10 79011015 79011015 C T KCNMA1 Splice_Site p.X181_splice 0.07 TCGA-EL-A3CO-01 14 64680925 64680925 A G SYNE2 Missense_Mutation p.E6357G 0.06 probably_damaging(0.999) TCGA-EL-A3CO-01 15 25448253 25448253 G A SNORD115-20 5'Flank 0.12 TCGA-EL-A3CO-01 16 61687935 61687935 G A CDH8 Silent p.D659D 0.07 TCGA-EL-A3CO-01 19 44807571 44807571 C A ZNF235 5'UTR 0.08 TCGA-EL-A3CO-01 21 30699014 30699014 A - BACH1 Frame_Shift_Del p.T291Rfs*16 0.08 TCGA-EL-A3CO-01 4 6302918 6302918 G C WFS1 Missense_Mutation p.G466R 0.07 deleterious(0.01) probably_damaging(0.973) TCGA-EL-A3CO-01 4 74357625 74357625 T G AFM Missense_Mutation p.S294A 0.04 tolerated(0.23) benign(0.039) TCGA-EL-A3CO-01 X 20156731 20156731 C T EIF1AX Missense_Mutation p.G9D 0.19 deleterious(0) unknown(0) TCGA-EL-A3CP-01 11 66050945 66050945 C T CNIH2 Intron 0.07 TCGA-EL-A3CP-01 16 55855375 55855375 G T CES1 Missense_Mutation p.R200S 0.10 deleterious(0) benign(0.431) TCGA-EL-A3CP-01 18 72346448 72346448 T C ZNF407 Missense_Mutation p.F1158S 0.22 tolerated(0.41) benign(0.187) TCGA-EL-A3CP-01 1 117150895 117150895 C T IGSF3 Silent p.P297P 0.08 TCGA-EL-A3CP-01 21 40834416 40834416 C T SH3BGR Missense_Mutation p.P117L 0.06 deleterious(0) probably_damaging(0.994) TCGA-EL-A3CP-01 3 49314380 49314380 G A C3orf62 5'UTR 0.23 TCGA-EL-A3CP-01 4 123193357 123193357 A G KIAA1109 Missense_Mutation p.E2748G 0.23 probably_damaging(0.993) TCGA-EL-A3CP-01 5 176314337 176314337 C T HK3 Silent p.E534E 0.24 TCGA-EL-A3CP-01 6 46656684 46656684 G A TDRD6 Silent p.S273S 0.11 TCGA-EL-A3CP-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CP-01 9 117166263 117166263 G T DFNB31 Silent p.G777G 0.32 TCGA-EL-A3CR-01 10 88704974 88704974 G T MMRN2 Missense_Mutation p.P151H 0.12 tolerated(0.09) benign(0.104) TCGA-EL-A3CR-01 11 102999693 102999693 A G DYNC2H1 Missense_Mutation p.M638V 0.07 possibly_damaging(0.607) TCGA-EL-A3CR-01 11 6048624 6048624 C T OR56A1 Missense_Mutation p.C104Y 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-EL-A3CR-01 11 6942667 6942667 C T OR2D3 Silent p.P145P 0.17 TCGA-EL-A3CR-01 12 47172402 47172402 C T SLC38A4 Missense_Mutation p.R292H 0.09 tolerated(0.19) benign(0) TCGA-EL-A3CR-01 12 69651614 69651614 C T CPSF6 Missense_Mutation p.P208L 0.11 deleterious(0.02) unknown(0) TCGA-EL-A3CR-01 13 31037690 31037690 T - HMGB1 Frame_Shift_Del p.K43Rfs*33 0.08 TCGA-EL-A3CR-01 15 101972253 101972253 C T PCSK6 Missense_Mutation p.R151Q 0.17 tolerated(0.16) benign(0.024) TCGA-EL-A3CR-01 15 31202968 31202968 C T FAN1 Silent p.V509V 0.21 TCGA-EL-A3CR-01 15 34355791 34355791 C T CHRM5 Silent p.S291S 0.08 TCGA-EL-A3CR-01 15 41071505 41071505 C A DNAJC17 Missense_Mutation p.A71S 0.10 deleterious(0) probably_damaging(0.911) TCGA-EL-A3CR-01 15 78316614 78316614 C - TBC1D2B Frame_Shift_Del p.E452Rfs*38 0.11 TCGA-EL-A3CR-01 15 99467892 99467894 TTC - IGF1R In_Frame_Del p.F922del 0.17 TCGA-EL-A3CR-01 17 39280056 39280056 G C KRTAP4-12 Missense_Mutation p.Q107E 0.11 tolerated(0.38) unknown(0) TCGA-EL-A3CR-01 18 12274153 12274153 T A CIDEA Missense_Mutation p.F131Y 0.14 deleterious(0.01) possibly_damaging(0.864) TCGA-EL-A3CR-01 19 2334612 2334612 G A AC004410.3 3'Flank 0.16 TCGA-EL-A3CR-01 19 46270388 46270388 C G SIX5 Missense_Mutation p.E277Q 0.33 deleterious(0.01) possibly_damaging(0.76) TCGA-EL-A3CR-01 19 52217155 52217155 C T HAS1 Missense_Mutation p.R421H 0.48 tolerated(0.11) benign(0.023) TCGA-EL-A3CR-01 1 152009430 152009430 G A S100A11 5'UTR 0.07 TCGA-EL-A3CR-01 1 228645400 228645400 T C HIST3H2A Missense_Mutation p.Y40C 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.672) TCGA-EL-A3CR-01 1 4832584 4832584 C T AJAP1 Nonsense_Mutation p.R388* 0.12 TCGA-EL-A3CR-01 20 30602787 30602787 G A CCM2L Silent p.R37R 0.06 TCGA-EL-A3CR-01 3 178916938 178916940 GAA - PIK3CA In_Frame_Del p.E110del 0.19 TCGA-EL-A3CR-01 3 69088082 69088082 C G TMF1 Missense_Mutation p.E636Q 0.09 deleterious(0) probably_damaging(0.969) TCGA-EL-A3CR-01 4 1347109 1347109 C G UVSSA Nonsense_Mutation p.S281* 0.17 TCGA-EL-A3CR-01 5 118506950 118506950 T G DMXL1 Missense_Mutation p.I2155S 0.10 deleterious(0) probably_damaging(0.999) TCGA-EL-A3CR-01 5 140181292 140181292 C T PCDHA3 Silent p.Y170Y 0.08 TCGA-EL-A3CR-01 5 140812302 140812302 C G PCDHGA12 Missense_Mutation p.T659R 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.693) TCGA-EL-A3CR-01 5 7868025 7868025 G A FASTKD3 Missense_Mutation p.H58Y 0.18 tolerated(0.25) benign(0.01) TCGA-EL-A3CR-01 6 27114964 27114964 T G HIST1H2AH Silent p.S19S 0.10 TCGA-EL-A3CR-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CR-01 7 72985120 72985120 A C TBL2 Missense_Mutation p.I354S 0.13 deleterious(0) probably_damaging(0.944) TCGA-EL-A3CR-01 8 100832176 100832176 C T VPS13B Silent p.S2965S 0.25 TCGA-EL-A3CR-01 8 107722934 107722934 T C OXR1 Missense_Mutation p.F571S 0.11 deleterious(0) probably_damaging(0.999) TCGA-EL-A3CR-01 8 116599646 116599646 T C TRPS1 Missense_Mutation p.N761S 0.05 tolerated_low_confidence(1) benign(0.002) TCGA-EL-A3CR-01 8 12956022 12956022 A G DLC1 Missense_Mutation p.L1018P 0.07 tolerated(0.17) benign(0.118) TCGA-EL-A3CR-01 8 143623678 143623678 G A BAI1 Silent p.E1361E 0.12 TCGA-EL-A3CR-01 8 22107993 22107993 C T POLR3D Missense_Mutation p.P387S 0.05 deleterious(0) probably_damaging(1) TCGA-EL-A3CS-01 10 64973686 64973686 G T JMJD1C Silent p.T747T 0.39 TCGA-EL-A3CS-01 11 6588368 6588368 A C DNHD1 Missense_Mutation p.S3877R 0.09 benign(0.215) TCGA-EL-A3CS-01 12 40076926 40076926 C T C12orf40 Silent p.S400S 0.42 TCGA-EL-A3CS-01 14 70714171 70714171 G T ADAM21P1 RNA 0.39 TCGA-EL-A3CS-01 14 70924423 70924423 C A ADAM21 Silent p.G69G 0.13 TCGA-EL-A3CS-01 16 2283533 2283533 G A E4F1 Missense_Mutation p.R384H 0.50 deleterious(0.01) probably_damaging(0.932) TCGA-EL-A3CS-01 16 72090087 72090087 G A HP Silent p.L11L 0.39 TCGA-EL-A3CS-01 18 33647274 33647274 G C RPRD1A Missense_Mutation p.H32D 0.29 deleterious(0) probably_damaging(0.934) TCGA-EL-A3CS-01 19 15061128 15061128 C T SLC1A6 Missense_Mutation p.R525Q 0.31 tolerated(0.15) benign(0) TCGA-EL-A3CS-01 19 58571460 58571460 C T ZNF135 Intron 0.50 TCGA-EL-A3CS-01 1 185062373 185062373 C A RNF2 Missense_Mutation p.S143R 0.05 deleterious(0) probably_damaging(0.969) TCGA-EL-A3CS-01 1 229623237 229623237 C T NUP133 Missense_Mutation p.E440K 0.40 deleterious(0.01) probably_damaging(0.973) TCGA-EL-A3CS-01 20 43056987 43056987 A T HNF4A Missense_Mutation p.D381V 0.16 deleterious(0) benign(0.312) TCGA-EL-A3CS-01 22 45972977 45972977 G A FBLN1 Missense_Mutation p.G654D 0.08 tolerated(0.07) probably_damaging(0.959) TCGA-EL-A3CS-01 2 103059671 103059671 A C IL18RAP Missense_Mutation p.T270P 0.24 deleterious(0.05) possibly_damaging(0.908) TCGA-EL-A3CS-01 2 179612467 179612467 A G TTN Intron 0.20 TCGA-EL-A3CS-01 2 216977742 216977742 G A XRCC5 Missense_Mutation p.A9T 0.37 tolerated(0.06) probably_damaging(0.975) TCGA-EL-A3CS-01 2 43458427 43458427 A T THADA Missense_Mutation p.L1841Q 0.15 deleterious(0) probably_damaging(0.99) TCGA-EL-A3CS-01 3 51994090 51994090 A G PCBP4 Intron 0.05 TCGA-EL-A3CS-01 3 57543196 57543196 G A PDE12 Missense_Mutation p.A364T 0.06 tolerated(0.08) benign(0.035) TCGA-EL-A3CS-01 5 89923208 89923208 C T GPR98 Missense_Mutation p.R285C 0.06 possibly_damaging(0.876) TCGA-EL-A3CS-01 6 102307352 102307352 G A GRIK2 Missense_Mutation p.R503H 0.12 deleterious(0.01) possibly_damaging(0.517) TCGA-EL-A3CS-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CS-01 7 154876155 154876155 C A HTR5A Missense_Mutation p.N344K 0.04 deleterious(0.02) benign(0.012) TCGA-EL-A3CT-01 10 134910590 134910590 A C GPR123 Missense_Mutation p.Y39S 0.08 deleterious(0) possibly_damaging(0.864) TCGA-EL-A3CT-01 10 60573609 60573609 C T BICC1 Missense_Mutation p.S799L 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-EL-A3CT-01 10 61666113 61666113 G A CCDC6 Nonsense_Mutation p.Q24* 0.36 TCGA-EL-A3CT-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.19 TCGA-EL-A3CT-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.33 TCGA-EL-A3CT-01 11 108098397 108098397 G - ATM Frame_Shift_Del p.E16Nfs*18 0.18 TCGA-EL-A3CT-01 11 1651522 1651522 C T KRTAP5-5 Missense_Mutation p.S151F 0.06 deleterious_low_confidence(0) unknown(0) TCGA-EL-A3CT-01 11 36631730 36631730 A G C11orf74 Missense_Mutation p.N26S 0.18 deleterious(0.03) benign(0.083) TCGA-EL-A3CT-01 11 55872901 55872901 G C OR8H2 Missense_Mutation p.S128T 0.22 deleterious(0.03) benign(0.002) TCGA-EL-A3CT-01 11 62299935 62299935 G A AHNAK Silent p.L652L 0.22 TCGA-EL-A3CT-01 11 62494265 62494265 C T HNRNPUL2 Missense_Mutation p.A122T 0.33 tolerated(0.56) possibly_damaging(0.499) TCGA-EL-A3CT-01 11 6500468 6500468 G A ARFIP2 Missense_Mutation p.H73Y 0.16 tolerated(0.39) benign(0.021) TCGA-EL-A3CT-01 11 65265970 65265970 C T MALAT1 RNA 0.23 TCGA-EL-A3CT-01 11 66263137 66263137 G A DPP3 Silent p.V538V 0.18 TCGA-EL-A3CT-01 11 85956375 85956375 G A EED Missense_Mutation p.G35E 0.30 tolerated(0.63) benign(0.017) TCGA-EL-A3CT-01 12 13224331 13224331 G A KIAA1467 Splice_Site p.X508_splice 0.25 TCGA-EL-A3CT-01 12 53346038 53346038 G A KRT18 Missense_Mutation p.E362K 0.25 deleterious(0.03) benign(0.247) TCGA-EL-A3CT-01 12 56490857 56490857 A G ERBB3 Missense_Mutation p.H768R 0.13 deleterious(0) probably_damaging(0.995) TCGA-EL-A3CT-01 12 89745586 89745586 G A DUSP6 Silent p.F77F 0.18 TCGA-EL-A3CT-01 13 107823105 107823105 C T FAM155A Missense_Mutation p.E373K 0.07 deleterious(0.04) benign(0.154) TCGA-EL-A3CT-01 13 25262595 25262595 G A ATP12A Missense_Mutation p.A123T 0.20 deleterious(0.01) benign(0.421) TCGA-EL-A3CT-01 13 52585474 52585474 C T ATP7B 5'UTR 0.16 TCGA-EL-A3CT-01 13 73349381 73349381 C T DIS3 Missense_Mutation p.D319N 0.17 tolerated(0.1) benign(0.02) TCGA-EL-A3CT-01 14 20586459 20586459 A T OR4K17 Silent p.V298V 0.23 TCGA-EL-A3CT-01 14 23346174 23346174 C T LRP10 Missense_Mutation p.S527F 0.25 deleterious(0.03) possibly_damaging(0.804) TCGA-EL-A3CT-01 14 24635431 24635434 CACC - IRF9 3'UTR 0.25 TCGA-EL-A3CT-01 14 58863033 58863033 C T TOMM20L Nonsense_Mutation p.Q52* 0.18 TCGA-EL-A3CT-01 14 68758606 68758606 C T RAD51B Silent p.I254I 0.28 TCGA-EL-A3CT-01 15 69561469 69561469 C T GLCE Silent p.T580T 0.24 TCGA-EL-A3CT-01 15 90611785 90611785 C T ZNF710 Silent p.F472F 0.07 TCGA-EL-A3CT-01 16 11369687 11369687 C G PRM2 3'UTR 0.20 TCGA-EL-A3CT-01 16 3065427 3065427 C T CLDN6 Missense_Mutation p.R199H 0.24 tolerated(0.07) benign(0.003) TCGA-EL-A3CT-01 16 31089468 31089468 A C ZNF646 Missense_Mutation p.E608A 0.12 deleterious(0.01) benign(0.081) TCGA-EL-A3CT-01 16 31724743 31724743 G A ZNF720 5'UTR 0.30 TCGA-EL-A3CT-01 16 53262947 53262947 A G CHD9 Missense_Mutation p.R741G 0.13 probably_damaging(0.995) TCGA-EL-A3CT-01 16 88690386 88690386 C - ZC3H18 Frame_Shift_Del p.P606Rfs*32 0.17 TCGA-EL-A3CT-01 17 18965390 18965390 G A SNORD3B-1 RNA 0.11 TCGA-EL-A3CT-01 17 18967291 18967291 C T SNORD3B-2 RNA 0.09 TCGA-EL-A3CT-01 17 3984759 3984759 G A ZZEF1 Missense_Mutation p.L914F 0.29 deleterious(0.04) probably_damaging(0.964) TCGA-EL-A3CT-01 17 9760756 9760756 C T GLP2R Missense_Mutation p.R210C 0.09 deleterious(0) probably_damaging(1) TCGA-EL-A3CT-01 18 31463212 31463212 G A NOL4 Silent p.S573S 0.17 TCGA-EL-A3CT-01 18 32438301 32438301 C T DTNA Nonsense_Mutation p.Q442* 0.15 TCGA-EL-A3CT-01 18 33647312 33647312 G A RPRD1A Missense_Mutation p.S19L 0.31 deleterious(0) benign(0.127) TCGA-EL-A3CT-01 18 47803212 47803212 G A MBD1 Missense_Mutation p.P128S 0.26 tolerated(0.15) possibly_damaging(0.713) TCGA-EL-A3CT-01 18 748002 748002 C T YES1 Missense_Mutation p.E130K 0.21 tolerated(0.35) benign(0.021) TCGA-EL-A3CT-01 19 10381886 10381886 C T ICAM1 Silent p.L17L 0.15 TCGA-EL-A3CT-01 19 10395810 10395810 C T ICAM1 Silent p.V482V 0.22 TCGA-EL-A3CT-01 19 13041137 13041137 C T FARSA Missense_Mutation p.E135K 0.21 tolerated(0.83) benign(0.001) TCGA-EL-A3CT-01 19 14736376 14736376 G A EMR3 Silent p.I616I 0.09 TCGA-EL-A3CT-01 19 2877814 2877814 G A ZNF556 Silent p.P286P 0.18 TCGA-EL-A3CT-01 19 44174278 44174278 G A PLAUR 5'UTR 0.25 TCGA-EL-A3CT-01 19 5719905 5719905 G A LONP1 Missense_Mutation p.S80L 0.31 tolerated(0.16) benign(0.01) TCGA-EL-A3CT-01 19 7533921 7533921 G A ARHGEF18 Missense_Mutation p.V1043M 0.23 deleterious(0) probably_damaging(0.986) TCGA-EL-A3CT-01 1 145584527 145584527 T A PIAS3 Silent p.P498P 0.03 TCGA-EL-A3CT-01 1 151288518 151288518 T C PI4KB Missense_Mutation p.Y159C 0.04 deleterious(0) probably_damaging(0.999) TCGA-EL-A3CT-01 1 151316350 151316350 C T RFX5 Missense_Mutation p.M188I 0.24 tolerated(0.1) benign(0.027) TCGA-EL-A3CT-01 1 201252779 201252779 C T PKP1 5'UTR 0.33 TCGA-EL-A3CT-01 1 22448049 22448049 C T WNT4 Missense_Mutation p.V112M 0.07 deleterious(0) probably_damaging(0.989) TCGA-EL-A3CT-01 1 226036682 226036682 G A TMEM63A Silent p.F701F 0.27 TCGA-EL-A3CT-01 1 28863285 28863285 G A RCC1 Missense_Mutation p.E353K 0.20 deleterious(0.01) benign(0.037) TCGA-EL-A3CT-01 1 3624151 3624151 G A TP73 Missense_Mutation p.M75I 0.09 tolerated(0.92) benign(0.002) TCGA-EL-A3CT-01 21 34837657 34837657 C T TMEM50B Missense_Mutation p.G91E 0.05 deleterious(0) probably_damaging(0.998) TCGA-EL-A3CT-01 21 37507778 37507778 G A CBR3 Silent p.K96K 0.22 TCGA-EL-A3CT-01 22 50752658 50752658 C T DENND6B Silent p.L372L 0.18 TCGA-EL-A3CT-01 2 29063092 29063092 C T SPDYA Missense_Mutation p.H203Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-EL-A3CT-01 2 63091877 63091877 G A EHBP1 Missense_Mutation p.E292K 0.16 tolerated(0.39) benign(0.005) TCGA-EL-A3CT-01 2 97270558 97270558 G A KANSL3 Missense_Mutation p.S659L 0.33 tolerated_low_confidence(0.3) benign(0.053) TCGA-EL-A3CT-01 2 99204146 99204146 G A INPP4A 3'UTR 0.23 TCGA-EL-A3CT-01 3 122145978 122145978 C T KPNA1 Missense_Mutation p.E491K 0.23 tolerated(0.13) possibly_damaging(0.514) TCGA-EL-A3CT-01 3 183966696 183966696 G A ALG3 Silent p.S11S 0.36 TCGA-EL-A3CT-01 3 183966697 183966697 G A ALG3 Missense_Mutation p.S11F 0.36 tolerated(0.05) benign(0.032) TCGA-EL-A3CT-01 3 49169963 49169963 C T LAMB2 Silent p.L70L 0.20 TCGA-EL-A3CT-01 4 435626 435626 G A ZNF721 Missense_Mutation p.S877F 0.22 tolerated(0.51) benign(0.052) TCGA-EL-A3CT-01 4 76861902 76861902 G A NAAA Silent p.V67V 0.41 TCGA-EL-A3CT-01 5 140810404 140810404 C T PCDHGA12 Silent p.T26T 0.05 TCGA-EL-A3CT-01 5 167553841 167553841 G A TENM2 Silent p.A764A 0.12 TCGA-EL-A3CT-01 5 167887657 167887657 G A WWC1 Silent p.L942L 0.31 TCGA-EL-A3CT-01 5 33751436 33751436 G A ADAMTS12 Intron 0.19 TCGA-EL-A3CT-01 5 52096595 52096595 G A PELO Missense_Mutation p.E123K 0.21 deleterious(0.03) benign(0.142) TCGA-EL-A3CT-01 6 13487069 13487069 G C GFOD1 Missense_Mutation p.I18M 0.13 deleterious(0) possibly_damaging(0.9) TCGA-EL-A3CT-01 6 138583995 138583995 G A KIAA1244 Missense_Mutation p.E459K 0.20 tolerated(0.24) benign(0.14) TCGA-EL-A3CT-01 6 146875728 146875728 C T RAB32 Missense_Mutation p.S222F 0.05 tolerated(0.06) benign(0.043) TCGA-EL-A3CT-01 6 159058168 159058168 G A DYNLT1 Missense_Mutation p.S88F 0.15 deleterious(0) benign(0.252) TCGA-EL-A3CT-01 6 159058186 159058186 G A DYNLT1 Missense_Mutation p.S82F 0.18 deleterious(0) probably_damaging(0.985) TCGA-EL-A3CT-01 6 159206498 159206498 G A EZR Missense_Mutation p.L104F 0.24 deleterious(0) probably_damaging(0.982) TCGA-EL-A3CT-01 6 26225757 26225757 C T HIST1H3E Silent p.I125I 0.24 TCGA-EL-A3CT-01 6 29323725 29323725 A G OR5V1 Missense_Mutation p.V83A 0.10 tolerated(0.56) benign(0.006) TCGA-EL-A3CT-01 6 31133468 31133468 G A POU5F1 Silent p.F179F 0.14 TCGA-EL-A3CT-01 6 31516041 31516041 C T ATP6V1G2 5'Flank 0.26 TCGA-EL-A3CT-01 6 47847599 47847599 G C PTCHD4 Missense_Mutation p.D327E 0.11 tolerated(1) benign(0.019) TCGA-EL-A3CT-01 7 121636594 121636594 T G PTPRZ1 Missense_Mutation p.F363V 0.18 deleterious(0.02) benign(0.094) TCGA-EL-A3CT-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CT-01 7 150269372 150269372 C T GIMAP4 Missense_Mutation p.R72C 0.14 deleterious(0.04) possibly_damaging(0.849) TCGA-EL-A3CT-01 7 150753685 150753685 G A CDK5 Silent p.L98L 0.30 TCGA-EL-A3CT-01 7 50514709 50514709 G A FIGNL1 Nonsense_Mutation p.Q93* 0.21 TCGA-EL-A3CT-01 8 21926531 21926531 C T DMTN Missense_Mutation p.S85L 0.25 deleterious(0) benign(0.066) TCGA-EL-A3CT-01 8 42196191 42196191 G A POLB Missense_Mutation p.D17N 0.07 deleterious(0) benign(0.413) TCGA-EL-A3CT-01 9 2718867 2718867 G A KCNV2 Silent p.L376L 0.38 TCGA-EL-A3CT-01 9 5757374 5757374 C T KIAA1432 Missense_Mutation p.H639Y 0.12 deleterious(0) benign(0.288) TCGA-EL-A3CT-01 9 98239123 98239123 G A PTCH1 Missense_Mutation p.A507V 0.22 deleterious(0) possibly_damaging(0.835) TCGA-EL-A3CT-01 X 129799694 129799694 C T ENOX2 Missense_Mutation p.A342T 0.20 deleterious(0.02) benign(0.306) TCGA-EL-A3CT-01 X 2933405 2933405 G A ARSH Missense_Mutation p.M245I 0.15 tolerated(0.24) benign(0.007) TCGA-EL-A3CT-01 X 47518370 47518370 G A UXT 5'UTR 0.29 TCGA-EL-A3CT-01 X 47835508 47835508 G C ZNF182 3'UTR 0.34 TCGA-EL-A3CU-01 10 103908243 103908243 C T PPRC1 Silent p.S1505S 0.11 TCGA-EL-A3CU-01 10 127408456 127408456 A T EDRF1 Missense_Mutation p.Q27L 0.35 tolerated_low_confidence(0.06) unknown(0) TCGA-EL-A3CU-01 12 38714267 38714267 G T ALG10B Missense_Mutation p.G225V 0.04 tolerated(0.35) benign(0.018) TCGA-EL-A3CU-01 15 64658203 64658203 G A KIAA0101 3'UTR 0.30 TCGA-EL-A3CU-01 17 7761468 7761468 C T CYB5D1 Silent p.L6L 0.29 TCGA-EL-A3CU-01 19 46914368 46914368 C T CCDC8 3'UTR 0.33 TCGA-EL-A3CU-01 1 152325310 152325310 G T FLG2 Missense_Mutation p.S1651Y 0.26 possibly_damaging(0.831) TCGA-EL-A3CU-01 1 192150498 192150498 A G RGS18 Silent p.E120E 0.08 TCGA-EL-A3CU-01 1 3102815 3102815 C T PRDM16 Missense_Mutation p.P55L 0.27 tolerated_low_confidence(0.15) possibly_damaging(0.816) TCGA-EL-A3CU-01 22 38318081 38318081 G A MICALL1 Silent p.G224G 0.09 TCGA-EL-A3CU-01 2 179436988 179436988 G A TTN Missense_Mutation p.T24624I 0.23 TCGA-EL-A3CU-01 2 234627585 234627585 C A UGT1A4 Missense_Mutation p.P40H 0.08 tolerated(1) benign(0.001) TCGA-EL-A3CU-01 3 108102490 108102490 T - MYH15 Frame_Shift_Del p.E1926Dfs*91 0.19 TCGA-EL-A3CU-01 3 49691425 49691426 CT - BSN Frame_Shift_Del p.S1481Pfs*83 0.21 TCGA-EL-A3CU-01 4 70464983 70464983 G A UGT2A1 Missense_Mutation p.P492L 0.11 deleterious(0) probably_damaging(0.996) TCGA-EL-A3CU-01 4 959854 959854 G A DGKQ Nonsense_Mutation p.Q481* 0.45 TCGA-EL-A3CU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CU-01 7 56172116 56172116 G T CHCHD2 Missense_Mutation p.P35T 0.29 tolerated(0.07) unknown(0) TCGA-EL-A3CU-01 7 99757490 99757490 C A GAL3ST4 3'UTR 0.13 TCGA-EL-A3CU-01 8 144548018 144548018 T A ZC3H3 Missense_Mutation p.M726L 0.15 deleterious(0) probably_damaging(0.986) TCGA-EL-A3CU-01 8 16850687 16850687 T C FGF20 Missense_Mutation p.D177G 0.30 tolerated(0.09) possibly_damaging(0.479) TCGA-EL-A3CU-01 X 102931475 102931475 C T MORF4L2 Missense_Mutation p.E161K 0.27 deleterious(0.02) benign(0.06) TCGA-EL-A3CU-01 X 129519127 129519127 T G GPR119 Missense_Mutation p.I99L 0.32 deleterious(0.01) probably_damaging(0.912) TCGA-EL-A3CV-01 2 166027021 166027021 C T SCN3A Missense_Mutation p.R101Q 0.13 deleterious(0) probably_damaging(0.997) TCGA-EL-A3CV-01 3 36872912 36872912 C T TRANK1 Missense_Mutation p.R2677Q 0.24 tolerated(0.2) benign(0.037) TCGA-EL-A3CV-01 5 150683038 150683038 G A SLC36A3 5'UTR 0.21 TCGA-EL-A3CV-01 5 71638813 71638813 A G PTCD2 Missense_Mutation p.I260V 0.25 tolerated(0.08) benign(0.338) TCGA-EL-A3CV-01 6 109787075 109787075 T A ZBTB24 Silent p.P691P 0.19 TCGA-EL-A3CV-01 6 28333660 28333660 G T ZKSCAN3 Missense_Mutation p.K405N 0.24 deleterious(0) probably_damaging(0.996) TCGA-EL-A3CV-01 6 88854344 88854344 G T CNR1 Missense_Mutation p.S217Y 0.20 deleterious(0.05) probably_damaging(1) TCGA-EL-A3CV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-EL-A3CW-01 10 75883629 75883629 T C AP3M1 Missense_Mutation p.Y399C 0.04 deleterious(0) probably_damaging(0.998) TCGA-EL-A3CW-01 12 26572040 26572040 G A ITPR2 Missense_Mutation p.A2351V 0.06 tolerated(0.75) benign(0.01) TCGA-EL-A3CW-01 12 48091473 48091473 G A RPAP3 Silent p.D108D 0.07 TCGA-EL-A3CW-01 17 58512596 58512596 G A C17orf64 3'Flank 0.05 TCGA-EL-A3CW-01 19 16614022 16614022 C T C19orf44 Silent p.H302H 0.06 TCGA-EL-A3CW-01 22 46643010 46643010 G A CDPF1 Silent p.G74G 0.12 TCGA-EL-A3CW-01 3 100042452 100042452 G A TBC1D23 Silent p.G680G 0.14 TCGA-EL-A3CW-01 5 87493539 87493539 T C TMEM161B Missense_Mutation p.Y378C 0.04 deleterious(0) probably_damaging(0.999) TCGA-EL-A3CX-01 18 34326989 34326989 G A FHOD3 Missense_Mutation p.A1200T 0.53 tolerated(0.06) benign(0.234) TCGA-EL-A3CX-01 20 20506939 20506939 T C RALGAPA2 Missense_Mutation p.K1217R 0.17 tolerated(0.72) benign(0.003) TCGA-EL-A3CX-01 22 32019743 32019743 G A PISD Missense_Mutation p.T49I 0.07 deleterious_low_confidence(0.02) benign(0.232) TCGA-EL-A3CX-01 3 129389482 129389482 G C TMCC1 Missense_Mutation p.A401G 0.41 tolerated(1) benign(0.001) TCGA-EL-A3CX-01 3 97868995 97868995 G A OR5H14 Missense_Mutation p.A256T 0.36 deleterious(0.01) benign(0.005) TCGA-EL-A3CX-01 3 98073450 98073450 T C OR5K4 Silent p.F251F 0.52 TCGA-EL-A3CX-01 4 90857420 90857421 AG - MMRN1 Frame_Shift_Del p.D864Hfs*2 0.30 TCGA-EL-A3CX-01 5 112116592 112116592 C T APC Nonsense_Mutation p.R213* 0.94 TCGA-EL-A3CX-01 7 128470999 128470999 C G FLNC Missense_Mutation p.A103G 0.38 deleterious(0) benign(0.289) TCGA-EL-A3CX-01 9 137642703 137642703 C T COL5A1 Missense_Mutation p.A546V 0.07 probably_damaging(0.99) TCGA-EL-A3CY-01 11 47744665 47744665 G A FNBP4 Missense_Mutation p.P890S 0.07 tolerated(0.14) benign(0.018) TCGA-EL-A3CY-01 14 39560843 39560843 C T SEC23A Silent p.L147L 0.07 TCGA-EL-A3CY-01 17 1400056 1400056 G C INPP5K Silent p.P335P 0.06 TCGA-EL-A3CY-01 X 9914880 9914880 T C SHROOM2 Missense_Mutation p.L1585P 0.18 deleterious(0) probably_damaging(0.998) TCGA-EL-A3CZ-01 10 103292735 103292735 C T BTRC Silent p.C335C 0.06 TCGA-EL-A3CZ-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.41 tolerated(0.07) benign(0.069) TCGA-EL-A3CZ-01 17 42475015 42475015 G C GPATCH8 Missense_Mutation p.T1477S 0.31 tolerated(0.83) unknown(0) TCGA-EL-A3CZ-01 18 45371567 45371567 A G SMAD2 Intron 0.15 TCGA-EL-A3CZ-01 1 231411916 231411916 C T GNPAT Missense_Mutation p.A658V 0.17 tolerated(0.06) benign(0.027) TCGA-EL-A3CZ-01 2 204304820 204304821 - T RAPH1 Frame_Shift_Ins p.N1031Kfs*42 0.28 TCGA-EL-A3CZ-01 6 79707237 79707237 G A PHIP Missense_Mutation p.R699W 0.35 tolerated(0.08) probably_damaging(0.982) TCGA-EL-A3CZ-01 X 22292423 22292424 - A ZNF645 3'UTR 0.29 TCGA-EL-A3D0-01 11 104825694 104825694 C T CASP4 Silent p.L14L 0.31 TCGA-EL-A3D0-01 11 552111 552111 C G LRRC56 Missense_Mutation p.L354V 0.28 tolerated(0.06) possibly_damaging(0.556) TCGA-EL-A3D0-01 12 120572142 120572142 G A GCN1L1 Missense_Mutation p.R2424W 0.09 possibly_damaging(0.586) TCGA-EL-A3D0-01 12 121706441 121706441 G A CAMKK2 Missense_Mutation p.R209C 0.43 deleterious(0) probably_damaging(0.967) TCGA-EL-A3D0-01 14 24538027 24538027 C T LRRC16B Silent p.P1278P 0.23 TCGA-EL-A3D0-01 14 28733965 28733965 G A BNIP3P1 RNA 0.22 TCGA-EL-A3D0-01 16 31096483 31096483 C A PRSS53 Nonsense_Mutation p.G328* 0.12 TCGA-EL-A3D0-01 17 67287453 67287453 T C ABCA5 Missense_Mutation p.I504V 0.19 tolerated(0.06) possibly_damaging(0.502) TCGA-EL-A3D0-01 19 3612148 3612148 C A CACTIN Missense_Mutation p.D684Y 0.19 deleterious(0) probably_damaging(1) TCGA-EL-A3D0-01 19 48244668 48244668 C A EHD2 Silent p.R537R 0.44 TCGA-EL-A3D0-01 19 8196578 8196578 C T FBN3 Missense_Mutation p.R617H 0.18 deleterious(0.01) benign(0.082) TCGA-EL-A3D0-01 1 248737883 248737883 C T OR2T34 Missense_Mutation p.R59H 0.31 tolerated(0.61) benign(0.002) TCGA-EL-A3D0-01 20 44666024 44666024 G A SLC12A5 Silent p.L227L 0.07 TCGA-EL-A3D0-01 2 175335223 175335223 C T GPR155 Silent p.V307V 0.09 TCGA-EL-A3D0-01 3 122134317 122134317 T G WDR5B Missense_Mutation p.N20T 0.42 tolerated(0.71) benign(0.007) TCGA-EL-A3D0-01 5 140908072 140908072 G C DIAPH1 Silent p.P1032P 0.41 TCGA-EL-A3D0-01 5 16769308 16769308 G A MYO10 Missense_Mutation p.A312V 0.61 deleterious(0) benign(0.01) TCGA-EL-A3D0-01 6 43325106 43325106 G A ZNF318 Nonsense_Mutation p.R316* 0.21 TCGA-EL-A3D0-01 6 56883337 56883337 T A BEND6 Missense_Mutation p.D277E 0.36 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-EL-A3D0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.55 deleterious(0) probably_damaging(0.967) TCGA-EL-A3D0-01 8 120650732 120650732 A G ENPP2 Silent p.N23N 0.23 TCGA-EL-A3D0-01 8 59352245 59352245 A G UBXN2B Missense_Mutation p.D196G 0.14 deleterious(0.01) possibly_damaging(0.849) TCGA-EL-A3D0-01 9 125273586 125273586 G T OR1J2 Missense_Mutation p.C169F 0.13 tolerated_low_confidence(0.09) benign(0.029) TCGA-EL-A3D0-01 X 39923030 39923031 - T BCOR Frame_Shift_Ins p.D1226Efs*19 0.33 TCGA-EL-A3D1-01 12 69743921 69743921 A T LYZ Missense_Mutation p.N57I 0.43 deleterious(0) probably_damaging(0.941) TCGA-EL-A3D1-01 13 100915074 100915074 A T PCCA Missense_Mutation p.I270L 0.04 deleterious(0.01) possibly_damaging(0.448) TCGA-EL-A3D1-01 17 68129292 68129292 A G KCNJ16 Missense_Mutation p.K355R 0.07 tolerated(0.49) benign(0.006) TCGA-EL-A3D1-01 22 20394574 20394575 AA - PI4KAP1 RNA 0.10 TCGA-EL-A3D1-01 5 35876286 35876286 A G IL7R Missense_Mutation p.S360G 0.40 deleterious(0.05) benign(0.03) TCGA-EL-A3D1-01 7 100280993 100280994 GC - GIGYF1 Frame_Shift_Del p.R709Pfs*111 0.31 TCGA-EL-A3D1-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-EL-A3D1-01 9 139914928 139914928 G A ABCA2 Silent p.L429L 0.25 TCGA-EL-A3D4-01 10 135373607 135373615 TTTGCACCA - SYCE1 In_Frame_Del p.M39_Q41del 0.16 TCGA-EL-A3D4-01 11 65144052 65144052 C T SLC25A45 Missense_Mutation p.M231I 0.32 tolerated(0.35) probably_damaging(0.991) TCGA-EL-A3D4-01 17 7495766 7495766 G A MPDU1 3'Flank 0.12 TCGA-EL-A3D4-01 19 44236934 44236934 G A SMG9 Intron 0.08 TCGA-EL-A3D4-01 1 1455665 1455665 A G ATAD3A Missense_Mutation p.Q268R 0.10 tolerated(0.12) possibly_damaging(0.493) TCGA-EL-A3D4-01 2 132022043 132022043 G A POTEE Missense_Mutation p.M1005I 0.19 deleterious_low_confidence(0) benign(0.355) TCGA-EL-A3D4-01 3 51429678 51429678 C T RBM15B Missense_Mutation p.A283V 0.25 tolerated(0.14) benign(0.02) TCGA-EL-A3D4-01 6 27879286 27879286 C T OR2B2 Missense_Mutation p.G271E 0.05 deleterious(0.01) probably_damaging(0.958) TCGA-EL-A3D4-01 9 125288964 125288964 G A OR1N1 Silent p.T203T 0.14 TCGA-EL-A3D4-01 9 5812998 5812998 T C ERMP1 Silent p.S304S 0.40 TCGA-EL-A3D5-01 12 54367562 54367562 G T HOXC11 Silent p.G179G 0.42 TCGA-EL-A3D5-01 12 96359525 96359525 G - AMDHD1 Frame_Shift_Del p.D334Ifs*20 0.20 TCGA-EL-A3D5-01 14 95557629 95557629 T C DICER1 Missense_Mutation p.E1813G 0.33 deleterious(0) probably_damaging(1) TCGA-EL-A3D5-01 14 95598913 95598916 GGAC - DICER1 Frame_Shift_Del p.S82Ifs*45 0.25 TCGA-EL-A3D5-01 17 7573998 7573999 CT - TP53 Frame_Shift_Del p.E343Afs*3 0.40 TCGA-EL-A3D5-01 19 19359691 19359691 C T NCAN Missense_Mutation p.P1274S 0.44 deleterious(0.04) benign(0.013) TCGA-EL-A3D5-01 2 169850358 169850358 G A ABCB11 Nonsense_Mutation p.Q216* 0.35 TCGA-EL-A3D5-01 2 201822123 201822123 C G ORC2 Splice_Site p.X80_splice 0.28 TCGA-EL-A3D5-01 3 50311400 50311400 C G SEMA3B Intron 0.31 TCGA-EL-A3D5-01 4 164247095 164247095 C T NPY1R Silent p.S204S 0.33 TCGA-EL-A3D5-01 5 140531380 140531380 C T PCDHB6 Silent p.L514L 0.04 TCGA-EL-A3D5-01 X 53114505 53114505 T A TSPYL2 Splice_Site p.X413_splice 0.34 TCGA-EL-A3D6-01 10 131943568 131943568 A G GLRX3 Silent p.Q62Q 0.05 TCGA-EL-A3D6-01 10 64973913 64973913 T A JMJD1C Nonsense_Mutation p.R672* 0.19 TCGA-EL-A3D6-01 11 2334910 2334910 C T TSPAN32 Silent p.Y127Y 0.40 TCGA-EL-A3D6-01 13 110844602 110844602 C A COL4A1 Missense_Mutation p.D499Y 0.11 benign(0.081) TCGA-EL-A3D6-01 14 39777757 39777757 G A CTAGE5 Missense_Mutation p.E392K 0.04 deleterious(0.03) possibly_damaging(0.495) TCGA-EL-A3D6-01 14 70522512 70522512 C T SLC8A3 Splice_Site p.X636_splice 0.46 TCGA-EL-A3D6-01 14 94847272 94847272 G A SERPINA1 Nonsense_Mutation p.Q285* 0.08 TCGA-EL-A3D6-01 15 97328316 97328316 G A SPATA8 Missense_Mutation p.S96N 0.46 deleterious_low_confidence(0.04) benign(0.383) TCGA-EL-A3D6-01 16 28507219 28507219 C T APOBR Missense_Mutation p.T286I 0.37 tolerated(0.11) benign(0.346) TCGA-EL-A3D6-01 17 73895623 73895623 G - MRPL38 Frame_Shift_Del p.S282Lfs*30 0.20 TCGA-EL-A3D6-01 17 74015142 74015142 C G EVPL Splice_Site p.X380_splice 0.33 TCGA-EL-A3D6-01 17 7572986 7572986 G A TP53 Nonsense_Mutation p.Q375* 0.04 TCGA-EL-A3D6-01 1 115321810 115321811 - T SIKE1 Frame_Shift_Ins p.A125Sfs*5 0.19 TCGA-EL-A3D6-01 20 5283032 5283032 C T PROKR2 Missense_Mutation p.R270H 0.13 deleterious(0) probably_damaging(0.998) TCGA-EL-A3D6-01 20 58558037 58558037 C T CDH26 Silent p.F151F 0.04 TCGA-EL-A3D6-01 21 19770245 19770245 A T TMPRSS15 Missense_Mutation p.S99T 0.25 tolerated(0.29) benign(0.02) TCGA-EL-A3D6-01 22 46318660 46318660 G C WNT7B 3'UTR 0.11 TCGA-EL-A3D6-01 2 202603435 202603435 A - ALS2 Frame_Shift_Del p.F792Sfs*18 0.11 TCGA-EL-A3D6-01 2 204824435 204824435 T G ICOS 3'UTR 0.15 TCGA-EL-A3D6-01 3 175455163 175455163 T C NAALADL2 Silent p.L656L 0.04 TCGA-EL-A3D6-01 3 27444776 27444776 C G SLC4A7 Silent p.V716V 0.04 TCGA-EL-A3D6-01 4 57194663 57194663 C G KIAA1211 3'UTR 0.17 TCGA-EL-A3D6-01 5 161128522 161128522 C T GABRA6 Missense_Mutation p.H369Y 0.04 tolerated(0.69) benign(0.002) TCGA-EL-A3D6-01 6 69758224 69758224 A T BAI3 Missense_Mutation p.K752I 0.09 deleterious(0.03) benign(0) TCGA-EL-A3D6-01 7 100352918 100352918 G T ZAN Missense_Mutation p.S1065I 0.28 unknown(0) TCGA-EL-A3D6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-EL-A3D6-01 8 59058923 59058923 C T FAM110B Missense_Mutation p.P45L 0.20 deleterious(0.01) possibly_damaging(0.813) TCGA-EL-A3D6-01 8 86193478 86193478 T G CA13 Missense_Mutation p.L230R 0.11 deleterious(0) probably_damaging(1) TCGA-EL-A3D6-01 9 107267381 107267381 G A OR13F1 Missense_Mutation p.G280R 0.11 deleterious(0) probably_damaging(0.96) TCGA-EL-A3D6-01 9 113208159 113208159 T C SVEP1 Missense_Mutation p.D1474G 0.04 benign(0.013) TCGA-EL-A3D6-01 9 95027811 95027811 C T IARS Missense_Mutation p.E486K 0.03 tolerated(0.1) probably_damaging(0.973) TCGA-EL-A3D6-01 X 71681859 71681859 G A HDAC8 Missense_Mutation p.H334Y 0.30 deleterious(0) probably_damaging(0.98) TCGA-EL-A3GO-01 11 4790251 4790251 T A OR51F1 Missense_Mutation p.K299N 0.42 deleterious(0.01) possibly_damaging(0.77) TCGA-EL-A3GO-01 14 95557639 95557639 C G DICER1 Missense_Mutation p.D1810H 0.35 deleterious(0) probably_damaging(1) TCGA-EL-A3GO-01 14 95590777 95590781 TTACT - DICER1 Frame_Shift_Del p.K376Nfs*11 0.33 TCGA-EL-A3GO-01 17 37371255 37371255 C T STAC2 Missense_Mutation p.E241K 0.35 deleterious(0.02) benign(0.231) TCGA-EL-A3GO-01 17 58143675 58143675 T A HEATR6 Missense_Mutation p.K437N 0.26 deleterious(0) possibly_damaging(0.734) TCGA-EL-A3GO-01 1 34011735 34011735 A G CSMD2 Missense_Mutation p.M2857T 0.57 deleterious(0) benign(0.065) TCGA-EL-A3GO-01 1 44457888 44457888 C T CCDC24 Missense_Mutation p.A44V 0.09 tolerated(0.47) probably_damaging(0.972) TCGA-EL-A3GO-01 X 135767911 135767911 C A ARHGEF6 Missense_Mutation p.W439C 0.10 deleterious(0) probably_damaging(0.998) TCGA-EL-A3GP-01 10 55782771 55782771 G C PCDH15 Missense_Mutation p.L803V 0.24 tolerated(0.17) benign(0.144) TCGA-EL-A3GP-01 12 109650693 109650693 G A ACACB Missense_Mutation p.R1101Q 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-EL-A3GP-01 12 117725989 117725989 G T NOS1 Silent p.S339S 0.35 TCGA-EL-A3GP-01 12 54396465 54396465 C A HOXC9 3'UTR 0.18 TCGA-EL-A3GP-01 13 37583813 37583813 A C SUPT20H Missense_Mutation p.F779C 0.35 deleterious_low_confidence(0) benign(0.085) TCGA-EL-A3GP-01 17 26603792 26603792 T C AC061975.8 5'Flank 0.35 TCGA-EL-A3GP-01 17 5076150 5076150 T A USP6 Nonsense_Mutation p.Y1366* 0.27 TCGA-EL-A3GP-01 19 23405748 23405748 C G ZNF724P Missense_Mutation p.Q433H 0.20 tolerated(0.62) possibly_damaging(0.895) TCGA-EL-A3GP-01 1 17084765 17084765 C T MST1L RNA 0.15 TCGA-EL-A3GP-01 1 248813367 248813367 A T OR2T27 Silent p.A273A 0.46 TCGA-EL-A3GP-01 1 46877297 46877298 CT - FAAH Frame_Shift_Del p.W445Gfs*70 0.29 TCGA-EL-A3GP-01 20 31022741 31022741 G C ASXL1 Silent p.G742G 0.37 TCGA-EL-A3GP-01 20 36869357 36869357 T C KIAA1755 Silent p.S392S 0.31 TCGA-EL-A3GP-01 22 37688673 37688673 C A CYTH4 Missense_Mutation p.L11M 0.43 deleterious(0.01) possibly_damaging(0.907) TCGA-EL-A3GP-01 2 135888244 135888244 G - RAB3GAP1 Frame_Shift_Del p.V397* 0.19 TCGA-EL-A3GP-01 3 107097052 107097052 C T CCDC54 Silent p.D206D 0.29 TCGA-EL-A3GP-01 3 125850235 125850235 T C ALDH1L1 Missense_Mutation p.K549E 0.30 deleterious(0) probably_damaging(1) TCGA-EL-A3GP-01 3 33451063 33451063 G A UBP1 Missense_Mutation p.R196W 0.19 deleterious(0.03) possibly_damaging(0.662) TCGA-EL-A3GP-01 3 51399384 51399384 G A DOCK3 Missense_Mutation p.G1701S 0.32 tolerated_low_confidence(0.96) benign(0.006) TCGA-EL-A3GP-01 4 77231280 77231280 G A FAM47E-STBD1 3'UTR 0.26 TCGA-EL-A3GP-01 5 76331518 76331518 A G AGGF1 Missense_Mutation p.T156A 0.18 tolerated(0.41) benign(0.009) TCGA-EL-A3GP-01 5 79950762 79950762 G A MSH3 Silent p.P72P 0.31 TCGA-EL-A3GP-01 6 152765610 152765610 T C SYNE1 Missense_Mutation p.Q1258R 0.25 benign(0.097) TCGA-EL-A3GP-01 6 152765611 152765611 G T SYNE1 Missense_Mutation p.Q1258K 0.25 benign(0.066) TCGA-EL-A3GP-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GP-01 7 149171562 149171562 G A ZNF746 Silent p.S617S 0.48 TCGA-EL-A3GQ-01 10 135084771 135084771 T C ADAM8 Missense_Mutation p.N436S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EL-A3GQ-01 10 22048118 22048118 C T DNAJC1 Missense_Mutation p.C526Y 0.38 deleterious(0) probably_damaging(0.909) TCGA-EL-A3GQ-01 11 75277986 75277986 G A SERPINH1 Missense_Mutation p.A198T 0.41 tolerated(0.18) probably_damaging(0.999) TCGA-EL-A3GQ-01 14 91770293 91770293 G A CCDC88C Silent p.S1129S 0.42 TCGA-EL-A3GQ-01 16 9923438 9923438 C A GRIN2A Missense_Mutation p.V617L 0.35 deleterious(0) probably_damaging(0.999) TCGA-EL-A3GQ-01 17 26696674 26696674 C G VTN Missense_Mutation p.G128A 0.36 tolerated(0.74) benign(0.114) TCGA-EL-A3GQ-01 17 39388991 39388991 T G KRTAP9-3 Missense_Mutation p.C80G 0.44 deleterious(0) unknown(0) TCGA-EL-A3GQ-01 17 58034708 58034708 T C RNFT1 Silent p.Q294Q 0.46 TCGA-EL-A3GQ-01 17 6553673 6553674 - A MED31 Intron 0.09 TCGA-EL-A3GQ-01 19 14523412 14523412 G A DDX39A Missense_Mutation p.A96V 0.19 deleterious(0.01) possibly_damaging(0.821) TCGA-EL-A3GQ-01 19 18001785 18001785 C G SLC5A5 Missense_Mutation p.A581G 0.37 tolerated(0.19) benign(0.003) TCGA-EL-A3GQ-01 3 42597460 42597460 G A SEC22C Silent p.L225L 0.44 TCGA-EL-A3GQ-01 6 76385768 76385768 C G SENP6 Missense_Mutation p.T540R 0.25 tolerated(0.08) benign(0.063) TCGA-EL-A3GQ-01 7 107594163 107594163 C T LAMB1 Missense_Mutation p.G964D 0.07 deleterious(0) probably_damaging(1) TCGA-EL-A3GQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GQ-01 X 78426795 78426795 G A GPR174 Silent p.L97L 0.39 TCGA-EL-A3GR-01 14 60581721 60581721 G C PCNXL4 Missense_Mutation p.G66A 0.26 tolerated(0.43) benign(0.008) TCGA-EL-A3GR-01 16 56660717 56660717 G A MT1E Intron 0.05 TCGA-EL-A3GR-01 17 41577392 41577392 C G DHX8 Silent p.L489L 0.36 TCGA-EL-A3GR-01 17 72209710 72209710 A G TTYH2 5'UTR 0.16 TCGA-EL-A3GR-01 1 158582606 158582606 C T SPTA1 Splice_Site p.X2378_splice 0.05 TCGA-EL-A3GR-01 3 136162169 136162169 C G STAG1 Missense_Mutation p.M502I 0.06 deleterious(0.02) possibly_damaging(0.459) TCGA-EL-A3GR-01 3 184093689 184093689 A C THPO Missense_Mutation p.L43R 0.30 deleterious(0) probably_damaging(1) TCGA-EL-A3GR-01 4 170641066 170641066 T C CLCN3 Silent p.P817P 0.09 TCGA-EL-A3GR-01 5 102895751 102895751 C G NUDT12 Missense_Mutation p.E67Q 0.31 tolerated(0.14) benign(0.101) TCGA-EL-A3GR-01 5 140802135 140802135 C - PCDHGA11 Frame_Shift_Del p.N447Kfs*29 0.08 TCGA-EL-A3GR-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GR-01 8 143695032 143695032 C T ARC Missense_Mutation p.E201K 0.38 tolerated_low_confidence(0.19) possibly_damaging(0.885) TCGA-EL-A3GR-01 9 95599903 95599903 G A ANKRD19P RNA 0.34 TCGA-EL-A3GR-01 X 106885605 106885605 G C PRPS1 Missense_Mutation p.D139H 0.28 deleterious(0.03) benign(0.013) TCGA-EL-A3GR-01 X 77302017 77302020 CACT - ATP7A Frame_Shift_Del p.L1487Wfs*23 0.36 TCGA-EL-A3GS-01 12 4705796 4705796 C G DYRK4 Missense_Mutation p.A154G 0.28 tolerated(0.4) possibly_damaging(0.601) TCGA-EL-A3GS-01 16 75563706 75563706 C T CHST5 Missense_Mutation p.V193M 0.35 deleterious(0) probably_damaging(0.975) TCGA-EL-A3GS-01 1 221057861 221057861 G A HLX Missense_Mutation p.G428S 0.14 tolerated_low_confidence(0.46) benign(0.01) TCGA-EL-A3GS-01 20 43959044 43959044 T C SDC4 Missense_Mutation p.Q136R 0.38 tolerated(0.12) benign(0.139) TCGA-EL-A3GS-01 22 44258311 44258311 A C SULT4A1 5'UTR 0.56 TCGA-EL-A3GS-01 3 5021633 5021633 C G BHLHE40 Intron 0.09 TCGA-EL-A3GS-01 3 99567862 99567862 A G FILIP1L Silent p.F886F 0.04 TCGA-EL-A3GS-01 4 111434635 111434635 A T ENPEP Missense_Mutation p.H458L 0.45 deleterious(0) probably_damaging(0.99) TCGA-EL-A3GS-01 5 140866043 140866043 C T PCDHGC4 Missense_Mutation p.L435F 0.37 deleterious(0.01) probably_damaging(0.986) TCGA-EL-A3GS-01 7 106513029 106513029 G A PIK3CG Silent p.L681L 0.06 TCGA-EL-A3GS-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GS-01 7 48336840 48336840 G T ABCA13 Missense_Mutation p.S3044I 0.21 possibly_damaging(0.878) TCGA-EL-A3GS-01 9 126129637 126129637 G A CRB2 Splice_Site p.X314_splice 0.13 TCGA-EL-A3GS-01 X 129354452 129354452 T A ZNF280C Missense_Mutation p.K466N 0.39 tolerated(0.09) benign(0.325) TCGA-EL-A3GU-01 10 64967938 64967938 G - JMJD1C Frame_Shift_Del p.P1164Qfs*13 0.27 TCGA-EL-A3GU-01 11 1977593 1977593 G A MRPL23 Silent p.Q135Q 0.05 TCGA-EL-A3GU-01 12 120794808 120794808 T G MSI1 Missense_Mutation p.K183N 0.12 deleterious(0) probably_damaging(0.98) TCGA-EL-A3GU-01 14 51192784 51192784 C T NIN Missense_Mutation p.G2027R 0.33 tolerated(0.14) possibly_damaging(0.53) TCGA-EL-A3GU-01 15 91172490 91172490 C A CRTC3 Missense_Mutation p.P331H 0.32 deleterious(0) probably_damaging(0.999) TCGA-EL-A3GU-01 17 6553677 6553677 A G MED31 Silent p.N35N 0.03 TCGA-EL-A3GU-01 18 44036651 44036651 G A RNF165 3'UTR 0.36 TCGA-EL-A3GU-01 1 147084886 147084886 G T BCL9 Missense_Mutation p.K86N 0.27 deleterious(0) probably_damaging(0.991) TCGA-EL-A3GU-01 1 201779154 201779154 G A NAV1 Silent p.V1494V 0.09 TCGA-EL-A3GU-01 1 243471455 243471476 TGCAGACCATCGAAAGACTGGT - SDCCAG8 Frame_Shift_Del p.M302Ifs*7 0.32 TCGA-EL-A3GU-01 1 44442971 44442971 C T ATP6V0B Intron 0.36 TCGA-EL-A3GU-01 20 43043255 43043255 T A HNF4A Missense_Mutation p.W201R 0.14 deleterious(0) probably_damaging(1) TCGA-EL-A3GU-01 22 46669963 46669963 A G TTC38 Missense_Mutation p.N121S 0.09 tolerated(0.4) benign(0.001) TCGA-EL-A3GU-01 2 113251935 113251935 C T TTL Missense_Mutation p.S151L 0.29 deleterious(0.02) possibly_damaging(0.876) TCGA-EL-A3GU-01 2 68544345 68544345 C T CNRIP1 Missense_Mutation p.E92K 0.35 tolerated(0.19) possibly_damaging(0.829) TCGA-EL-A3GU-01 3 9517666 9517666 C T SETD5 Missense_Mutation p.A1407V 0.28 tolerated(0.23) benign(0.008) TCGA-EL-A3GU-01 6 24505158 24505158 C T ALDH5A1 Missense_Mutation p.T224I 0.44 deleterious(0) probably_damaging(0.993) TCGA-EL-A3GU-01 7 131073683 131073683 A T MKLN1 Nonsense_Mutation p.K118* 0.29 TCGA-EL-A3GU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GU-01 7 93055811 93055811 C T CALCR Missense_Mutation p.A462T 0.35 tolerated(0.41) benign(0.01) TCGA-EL-A3GU-01 9 116116526 116116526 A G BSPRY Missense_Mutation p.I70V 0.45 deleterious(0.01) benign(0.265) TCGA-EL-A3GU-01 9 13125351 13125351 T C MPDZ Silent p.K1557K 0.46 TCGA-EL-A3GU-01 9 137721851 137721851 C T COL5A1 Silent p.N1699N 0.19 TCGA-EL-A3GU-01 9 34647938 34647938 G A GALT Missense_Mutation p.A163T 0.41 tolerated(0.36) benign(0.007) TCGA-EL-A3GU-01 X 48417526 48417526 G T TBC1D25 Intron 0.48 TCGA-EL-A3GU-01 X 54841926 54841926 T C MAGED2 Silent p.S544S 0.24 TCGA-EL-A3GU-01 X 70511735 70511735 G A NONO Silent p.E87E 0.09 TCGA-EL-A3GV-01 12 52866044 52866044 C T KRT6C Silent p.Q187Q 0.11 TCGA-EL-A3GV-01 14 93303788 93303788 A G GOLGA5 Missense_Mutation p.I703M 0.07 tolerated(0.08) possibly_damaging(0.625) TCGA-EL-A3GV-01 15 20193165 20193165 C A IGHV3OR15-7 Missense_Mutation p.G35C 0.09 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-EL-A3GV-01 15 45545719 45545719 G C SLC28A2 Splice_Site p.X57_splice 0.14 TCGA-EL-A3GV-01 16 57938657 57938657 A G CNGB1 Missense_Mutation p.F872S 0.04 deleterious(0) possibly_damaging(0.81) TCGA-EL-A3GV-01 17 18022790 18022790 C T MYO15A Missense_Mutation p.L226F 0.08 probably_damaging(0.991) TCGA-EL-A3GV-01 17 29588854 29588854 A G NF1 Missense_Mutation p.K1568R 0.06 tolerated(0.37) probably_damaging(0.952) TCGA-EL-A3GV-01 17 48212576 48212576 T G PPP1R9B 3'UTR 0.27 TCGA-EL-A3GV-01 18 13042296 13042296 A G CEP192 Missense_Mutation p.N677S 0.06 tolerated(0.95) benign(0.009) TCGA-EL-A3GV-01 18 7231664 7231664 G A LRRC30 Silent p.A176A 0.06 TCGA-EL-A3GV-01 19 14199324 14199324 G A SAMD1 Missense_Mutation p.R402C 0.08 deleterious(0) probably_damaging(0.997) TCGA-EL-A3GV-01 1 149858724 149858724 C T HIST2H2AC Missense_Mutation p.A67V 0.04 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-EL-A3GV-01 1 149902453 149902453 G A MTMR11 Intron 0.06 TCGA-EL-A3GV-01 3 45812903 45812903 C A SLC6A20 Missense_Mutation p.Q247H 0.06 deleterious(0) probably_damaging(0.982) TCGA-EL-A3GV-01 4 189068456 189068456 C A TRIML1 Missense_Mutation p.S446Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-EL-A3GV-01 6 167728844 167728844 G A UNC93A Silent p.G426G 0.05 TCGA-EL-A3GV-01 6 2117711 2117711 A G GMDS Missense_Mutation p.I76T 0.07 tolerated_low_confidence(0.65) benign(0.002) TCGA-EL-A3GV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.54 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GV-01 8 21769850 21769850 G - DOK2 Frame_Shift_Del p.R79Gfs*75 0.11 TCGA-EL-A3GV-01 9 125316381 125316381 C A OR1N2 Missense_Mutation p.N311K 0.06 deleterious(0) probably_damaging(0.994) TCGA-EL-A3GV-01 9 86474101 86474101 T A KIF27 Missense_Mutation p.K1040N 0.06 deleterious(0) possibly_damaging(0.887) TCGA-EL-A3GV-01 X 3002560 3002560 T A ARSF Missense_Mutation p.L228H 0.09 deleterious(0) probably_damaging(0.982) TCGA-EL-A3GV-01 X 76939853 76939853 T C ATRX Missense_Mutation p.K299E 0.09 probably_damaging(0.991) TCGA-EL-A3GW-01 10 73521377 73521377 G T C10orf54 Silent p.A163A 0.22 TCGA-EL-A3GW-01 12 50036356 50036356 G A PRPF40B Intron 0.20 TCGA-EL-A3GW-01 14 71051560 71051560 G A MED6 Silent p.G237G 0.08 TCGA-EL-A3GW-01 16 53340255 53340255 G T CHD9 Missense_Mutation p.E2242D 0.19 unknown(0) TCGA-EL-A3GW-01 17 6553725 6553725 C A MED31 Missense_Mutation p.Q19H 0.08 tolerated(0.05) benign(0.128) TCGA-EL-A3GW-01 19 10381800 10381800 T C ICAM1 5'UTR 0.50 TCGA-EL-A3GW-01 19 36333350 36333350 C T NPHS1 Missense_Mutation p.A813T 0.43 tolerated(0.43) benign(0.398) TCGA-EL-A3GW-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.49 tolerated(0.06) benign(0.006) TCGA-EL-A3GW-01 3 50679702 50679702 G A MAPKAPK3 Missense_Mutation p.R148Q 0.11 deleterious(0.03) benign(0.298) TCGA-EL-A3GW-01 7 128641196 128641196 C T TNPO3 Silent p.L263L 0.35 TCGA-EL-A3GW-01 7 150774839 150774839 G C FASTK Silent p.R356R 0.05 TCGA-EL-A3GW-01 7 44089851 44089851 C T DBNL Silent p.S37S 0.06 TCGA-EL-A3GW-01 9 35079474 35079474 C T FANCG Nonsense_Mutation p.W16* 0.33 TCGA-EL-A3GW-01 X 30873051 30873051 G A TAB3 Missense_Mutation p.T244I 0.47 deleterious(0.01) possibly_damaging(0.479) TCGA-EL-A3GX-01 12 11546180 11546180 G C PRB2 Missense_Mutation p.P278A 0.25 tolerated(0.21) unknown(0) TCGA-EL-A3GX-01 12 123344617 123344617 T C HIP1R Missense_Mutation p.L830P 0.11 deleterious(0) probably_damaging(1) TCGA-EL-A3GX-01 15 78841287 78841287 A T PSMA4 3'UTR 0.42 TCGA-EL-A3GX-01 17 5076339 5076339 G A USP6 3'UTR 0.12 TCGA-EL-A3GX-01 19 42224846 42224846 G A CEACAM5 Silent p.G592G 0.39 TCGA-EL-A3GX-01 1 46656197 46656197 G A POMGNT1 Intron 0.40 TCGA-EL-A3GX-01 22 30782087 30782089 AGA - RNF215 In_Frame_Del p.L158del 0.48 TCGA-EL-A3GX-01 2 44527120 44527120 G A SLC3A1 Missense_Mutation p.R301Q 0.19 tolerated(0.87) benign(0.007) TCGA-EL-A3GX-01 4 68500218 68500218 C G UBA6 Missense_Mutation p.E621Q 0.10 tolerated(0.06) probably_damaging(0.954) TCGA-EL-A3GX-01 6 34985340 34985340 G A ANKS1A Missense_Mutation p.G505D 0.30 deleterious(0) probably_damaging(0.955) TCGA-EL-A3GX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GX-01 8 22275185 22275185 A T SLC39A14 Missense_Mutation p.N390I 0.41 deleterious(0) probably_damaging(0.97) TCGA-EL-A3GX-01 X 20029036 20029036 G A MAP7D2 Missense_Mutation p.P736L 0.37 tolerated(0.06) unknown(0) TCGA-EL-A3GY-01 10 33215004 33215004 G C ITGB1 Missense_Mutation p.P194R 0.05 deleterious(0) probably_damaging(0.998) TCGA-EL-A3GY-01 14 79933743 79933743 A T NRXN3 Missense_Mutation p.I775L 0.17 tolerated(0.16) unknown(0) TCGA-EL-A3GY-01 15 102182710 102182710 C T TM2D3 Missense_Mutation p.G239E 0.04 deleterious(0) probably_damaging(0.937) TCGA-EL-A3GY-01 15 74659919 74659919 G C CYP11A1 Missense_Mutation p.A3G 0.16 deleterious_low_confidence(0.01) benign(0.345) TCGA-EL-A3GY-01 16 31050875 31050875 A G STX4 Missense_Mutation p.N239S 0.04 deleterious(0) benign(0.209) TCGA-EL-A3GY-01 19 5455622 5455622 G A ZNRF4 Silent p.R40R 0.05 TCGA-EL-A3GY-01 1 54426067 54426067 A T LRRC42 Missense_Mutation p.D215V 0.14 deleterious(0) probably_damaging(0.994) TCGA-EL-A3GY-01 4 70505149 70505149 G A UGT2A2 Silent p.I70I 0.05 TCGA-EL-A3GY-01 5 140745315 140745315 C G PCDHGA5 Missense_Mutation p.S473C 0.05 deleterious_low_confidence(0.03) benign(0.33) TCGA-EL-A3GY-01 6 26465519 26465519 A T BTN2A1 Missense_Mutation p.Q273H 0.06 tolerated(0.71) benign(0.002) TCGA-EL-A3GY-01 7 13971268 13971268 G C ETV1 Missense_Mutation p.P221A 0.09 tolerated(0.1) benign(0.21) TCGA-EL-A3GY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GY-01 8 133980057 133980058 - TT TG Frame_Shift_Ins p.C1904Sfs*7 0.10 TCGA-EL-A3GY-01 8 141549494 141549494 G A AGO2 Silent p.Y698Y 0.09 TCGA-EL-A3GZ-01 11 113860392 113860392 G T HTR3A Silent p.V486V 0.32 TCGA-EL-A3GZ-01 12 124887093 124887093 C T NCOR2 Silent p.Q499Q 0.56 TCGA-EL-A3GZ-01 19 2995019 2995019 C A TLE6 3'UTR 0.18 TCGA-EL-A3GZ-01 22 37771091 37771091 G T ELFN2 Missense_Mutation p.R162S 0.36 deleterious(0) possibly_damaging(0.813) TCGA-EL-A3GZ-01 2 47656952 47656952 G T MSH2 Missense_Mutation p.R383L 0.33 deleterious(0.04) possibly_damaging(0.699) TCGA-EL-A3GZ-01 5 139260543 139260543 G A NRG2 Nonsense_Mutation p.Q297* 0.05 TCGA-EL-A3GZ-01 6 26124113 26124113 G C HIST1H2BC Missense_Mutation p.S7C 0.40 deleterious_low_confidence(0) benign(0.031) TCGA-EL-A3GZ-01 7 131195717 131195717 G A PODXL Silent p.P192P 0.32 TCGA-EL-A3GZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-EL-A3GZ-01 X 103495055 103495055 G A ESX1 Missense_Mutation p.P359S 0.36 tolerated_low_confidence(0.39) unknown(0) TCGA-EL-A3H1-01 11 1246932 1246932 C T MUC5B Missense_Mutation p.P31L 0.18 unknown(0) TCGA-EL-A3H1-01 12 6691343 6691343 A C CHD4 Missense_Mutation p.V1492G 0.06 deleterious(0) possibly_damaging(0.908) TCGA-EL-A3H1-01 14 74390223 74390223 G C ZNF410 Missense_Mutation p.E483Q 0.42 tolerated_low_confidence(0.06) probably_damaging(0.993) TCGA-EL-A3H1-01 15 48788300 48788300 C T FBN1 Missense_Mutation p.E806K 0.43 probably_damaging(0.99) TCGA-EL-A3H1-01 15 55916680 55916680 G A PRTG Nonsense_Mutation p.Q985* 0.17 TCGA-EL-A3H1-01 15 74476216 74476216 C G STRA6 Missense_Mutation p.Q466H 0.44 deleterious(0.03) benign(0.299) TCGA-EL-A3H1-01 16 11945401 11945401 C T RSL1D1 5'UTR 0.40 TCGA-EL-A3H1-01 16 20430680 20430680 A C ACSM5 Missense_Mutation p.E182D 0.40 tolerated(0.68) benign(0) TCGA-EL-A3H1-01 16 57015114 57015114 C T CETP Silent p.L397L 0.29 TCGA-EL-A3H1-01 17 40725136 40725136 T G PSMC3IP Missense_Mutation p.K196Q 0.57 deleterious(0) probably_damaging(0.992) TCGA-EL-A3H1-01 17 7800502 7800502 G C CHD3 Missense_Mutation p.K662N 0.38 benign(0.403) TCGA-EL-A3H1-01 19 3576563 3576563 G T HMG20B Missense_Mutation p.D178Y 0.11 deleterious(0) probably_damaging(0.964) TCGA-EL-A3H1-01 1 153066138 153066139 - G SPRR2E Frame_Shift_Ins p.K31Efs*4 0.23 TCGA-EL-A3H1-01 1 89732216 89732216 G C GBP5 Missense_Mutation p.F227L 0.47 deleterious(0.01) possibly_damaging(0.5) TCGA-EL-A3H1-01 22 43898562 43898562 G A MPPED1 Missense_Mutation p.G263S 0.12 deleterious(0) probably_damaging(0.915) TCGA-EL-A3H1-01 2 165947659 165947659 G C SCN3A Missense_Mutation p.I1668M 0.44 deleterious(0) probably_damaging(0.937) TCGA-EL-A3H1-01 2 183998333 183998333 A G NUP35 Missense_Mutation p.T127A 0.25 tolerated(0.7) benign(0) TCGA-EL-A3H1-01 2 241447070 241447070 G T ANKMY1 Missense_Mutation p.N722K 0.49 deleterious(0) probably_damaging(0.99) TCGA-EL-A3H1-01 2 44055183 44055183 C T ABCG5 Silent p.G191G 0.15 TCGA-EL-A3H1-01 5 139941312 139941312 G C APBB3 Intron 0.39 TCGA-EL-A3H1-01 5 145895223 145895223 A C GPR151 Missense_Mutation p.Y152D 0.39 deleterious(0.04) benign(0.003) TCGA-EL-A3H1-01 6 135715913 135715913 C G AHI1 Splice_Site p.X1037_splice 0.27 TCGA-EL-A3H1-01 7 74306515 74306515 C T STAG3L2 RNA 0.22 TCGA-EL-A3H1-01 8 133978928 133978929 - A TG Frame_Shift_Ins p.W1892Mfs*38 0.39 TCGA-EL-A3H1-01 8 37704689 37704689 G A BRF2 Silent p.L73L 0.39 TCGA-EL-A3H1-01 9 130506914 130506914 T A SH2D3C Nonsense_Mutation p.K577* 0.13 TCGA-EL-A3H1-01 X 118797459 118797459 G T SEPT6 Silent p.I109I 0.06 TCGA-EL-A3H1-01 X 153042366 153042366 C T PLXNB3 Missense_Mutation p.L1643F 0.54 deleterious(0) probably_damaging(0.983) TCGA-EL-A3H1-01 X 154003524 154003524 T A DKC1 Silent p.V438V 0.45 TCGA-EL-A3H2-01 10 50531657 50531657 C - C10orf71 Frame_Shift_Del p.Q357Rfs*42 0.29 TCGA-EL-A3H2-01 14 23826572 23826572 C A EFS Missense_Mutation p.A517S 0.11 tolerated(0.21) benign(0.084) TCGA-EL-A3H2-01 14 23885503 23885503 C T MYH7 Missense_Mutation p.E1555K 0.03 deleterious(0.03) probably_damaging(0.951) TCGA-EL-A3H2-01 17 40354774 40354774 C G STAT5B Splice_Site p.X710_splice 0.03 TCGA-EL-A3H2-01 18 28986167 28986167 T C DSG4 Silent p.D588D 0.09 TCGA-EL-A3H2-01 20 377081 377081 G A TRIB3 Missense_Mutation p.R275H 0.05 deleterious(0.03) possibly_damaging(0.902) TCGA-EL-A3H2-01 2 179341923 179341923 C G FKBP7 Missense_Mutation p.G80A 0.08 deleterious(0) probably_damaging(1) TCGA-EL-A3H2-01 6 10894117 10894117 G A SYCP2L Silent p.T32T 0.07 TCGA-EL-A3H2-01 8 3165913 3165913 G A CSMD1 Silent p.Y1248Y 0.06 TCGA-EL-A3H2-01 8 94809588 94809588 C A TMEM67 Missense_Mutation p.P664T 0.32 deleterious(0) possibly_damaging(0.857) TCGA-EL-A3H2-01 9 131866547 131866547 G A CRAT Silent p.Y110Y 0.07 TCGA-EL-A3H2-01 9 97063337 97063337 G T ZNF169 Silent p.S499S 0.49 TCGA-EL-A3H3-01 10 61666090 61666090 C T CCDC6 Silent p.S31S 0.13 TCGA-EL-A3H3-01 11 65271449 65271450 - A MALAT1 RNA 0.24 TCGA-EL-A3H3-01 1 155106075 155106075 C A EFNA1 Intron 0.06 TCGA-EL-A3H3-01 9 4662738 4662738 G C PPAPDC2 Silent p.A121A 0.30 TCGA-EL-A3H3-01 X 54581094 54581094 A T GNL3L Missense_Mutation p.D472V 0.06 tolerated(0.1) benign(0.221) TCGA-EL-A3H3-01 X 99942293 99942293 G A SYTL4 Intron 0.11 TCGA-EL-A3H4-01 10 101596001 101596001 A T ABCC2 Missense_Mutation p.I1190F 0.13 deleterious(0) possibly_damaging(0.756) TCGA-EL-A3H4-01 12 121855480 121855480 C T RNF34 Silent p.P134P 0.05 TCGA-EL-A3H4-01 12 57398352 57398352 G A ZBTB39 Missense_Mutation p.A117V 0.18 deleterious(0) probably_damaging(0.997) TCGA-EL-A3H4-01 13 52952229 52952229 G A THSD1 Missense_Mutation p.R626C 0.07 deleterious(0) possibly_damaging(0.88) TCGA-EL-A3H4-01 15 34520681 34520681 A G EMC4 Missense_Mutation p.Y136C 0.21 deleterious(0) probably_damaging(0.992) TCGA-EL-A3H4-01 19 9069428 9069428 G T MUC16 Missense_Mutation p.H6006Q 0.13 unknown(0) TCGA-EL-A3H4-01 1 116311209 116311209 T C CASQ2 5'UTR 0.50 TCGA-EL-A3H4-01 22 42910219 42910219 C T RRP7A Missense_Mutation p.R217Q 0.15 deleterious(0.03) possibly_damaging(0.848) TCGA-EL-A3H4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.51 deleterious(0) probably_damaging(0.967) TCGA-EL-A3H4-01 8 139164287 139164287 A G FAM135B Missense_Mutation p.S811P 0.06 tolerated(0.32) benign(0) TCGA-EL-A3H4-01 9 105767017 105767017 C A CYLC2 Missense_Mutation p.P74Q 0.32 deleterious(0) probably_damaging(1) TCGA-EL-A3H4-01 9 125316420 125316420 T C OR1N2 Silent p.S324S 0.21 TCGA-EL-A3H4-01 X 152956776 152956776 A G SLC6A8 Missense_Mutation p.M138V 0.47 tolerated(1) benign(0.034) TCGA-EL-A3H5-01 11 109294460 109294460 G T C11orf87 Missense_Mutation p.G34V 0.25 tolerated_low_confidence(0.29) benign(0.426) TCGA-EL-A3H5-01 13 32937551 32937551 G T BRCA2 Missense_Mutation p.A2738S 0.24 deleterious(0) possibly_damaging(0.809) TCGA-EL-A3H5-01 14 24877450 24877450 C T NYNRIN Silent p.L192L 0.27 TCGA-EL-A3H5-01 15 74282792 74282792 G A STOML1 Missense_Mutation p.P47L 0.10 deleterious(0.01) benign(0.179) TCGA-EL-A3H5-01 15 74883967 74883967 G A ARID3B Missense_Mutation p.S411N 0.50 tolerated(0.13) benign(0.004) TCGA-EL-A3H5-01 15 81282072 81282072 G A MESDC2 Silent p.L21L 0.18 TCGA-EL-A3H5-01 16 22926896 22926896 A G HS3ST2 3'UTR 0.30 TCGA-EL-A3H5-01 17 39643690 39643690 C T KRT36 Silent p.E300E 0.17 TCGA-EL-A3H5-01 17 67102297 67102297 C A ABCA6 Silent p.L815L 0.22 TCGA-EL-A3H5-01 17 8789831 8789831 G A PIK3R5 Missense_Mutation p.A666V 0.04 deleterious(0) probably_damaging(1) TCGA-EL-A3H5-01 19 11559445 11559445 G T PRKCSH Splice_Site p.X422_splice 0.26 TCGA-EL-A3H5-01 19 36342241 36342241 G T NPHS1 Missense_Mutation p.A107E 0.38 deleterious(0) probably_damaging(0.998) TCGA-EL-A3H5-01 19 4552537 4552537 C T SEMA6B Missense_Mutation p.G296R 0.26 deleterious(0) probably_damaging(0.934) TCGA-EL-A3H5-01 1 197060037 197060037 G A ASPM Silent p.R3193R 0.15 TCGA-EL-A3H5-01 1 210591549 210591549 C T HHAT Silent p.L247L 0.22 TCGA-EL-A3H5-01 1 27685202 27685202 G A MAP3K6 Nonsense_Mutation p.Q861* 0.27 TCGA-EL-A3H5-01 1 86171801 86171801 G - ZNHIT6 Frame_Shift_Del p.S292Lfs*6 0.28 TCGA-EL-A3H5-01 3 126189759 126189759 G A ZXDC Missense_Mutation p.P417S 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-EL-A3H5-01 3 196612456 196612456 A G SENP5 Missense_Mutation p.N135S 0.27 tolerated_low_confidence(1) benign(0.001) TCGA-EL-A3H5-01 5 31532447 31532447 C T C5orf22 5'UTR 0.15 TCGA-EL-A3H5-01 6 28963566 28963566 G A ZNF311 Missense_Mutation p.H405Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-EL-A3H5-01 6 33282984 33282984 G A ZBTB22 Silent p.G570G 0.22 TCGA-EL-A3H5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-EL-A3H5-01 7 53104067 53104067 C T POM121L12 Missense_Mutation p.P235S 0.22 tolerated(0.1) probably_damaging(0.932) TCGA-EL-A3H5-01 8 12580704 12580704 T C LONRF1 Silent p.P741P 0.26 TCGA-EL-A3H5-01 9 38396762 38396762 C T ALDH1B1 Silent p.T339T 0.36 TCGA-EL-A3H5-01 X 102632483 102632483 C T NGFRAP1 Missense_Mutation p.R22C 0.20 tolerated(0.11) benign(0.05) TCGA-EL-A3H5-01 X 17742462 17742462 T A NHS Silent p.V363V 0.25 TCGA-EL-A3H5-01 X 41075213 41075213 A C USP9X Missense_Mutation p.K1798T 0.33 deleterious(0) probably_damaging(0.995) TCGA-EL-A3H7-01 10 121586462 121586462 T C INPP5F Missense_Mutation p.S857P 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-EL-A3H7-01 10 3824179 3824179 G A KLF6 Silent p.S110S 0.04 TCGA-EL-A3H7-01 11 1281040 1281040 G A MUC5B Missense_Mutation p.A5590T 0.07 unknown(0) TCGA-EL-A3H7-01 11 129812425 129812425 G A PRDM10 Missense_Mutation p.R288W 0.04 deleterious(0) probably_damaging(0.996) TCGA-EL-A3H7-01 13 51915229 51915229 T G SERPINE3 Translation_Start_Site p.M1? 0.35 deleterious(0) benign(0.14) TCGA-EL-A3H7-01 14 23075393 23075393 G C ABHD4 Missense_Mutation p.D236H 0.09 deleterious(0.03) possibly_damaging(0.71) TCGA-EL-A3H7-01 14 76259282 76259282 C T TTLL5 Missense_Mutation p.H1004Y 0.25 tolerated(0.36) possibly_damaging(0.625) TCGA-EL-A3H7-01 16 84792342 84792342 C G USP10 Missense_Mutation p.L405V 0.04 tolerated(0.11) possibly_damaging(0.764) TCGA-EL-A3H7-01 17 59989322 59989322 G C INTS2 Silent p.A261A 0.08 TCGA-EL-A3H7-01 18 42530643 42530643 A T SETBP1 Missense_Mutation p.E446D 0.05 tolerated(0.42) benign(0.007) TCGA-EL-A3H7-01 1 19181248 19181248 G A TAS1R2 Missense_Mutation p.T239M 0.42 deleterious(0.04) possibly_damaging(0.843) TCGA-EL-A3H7-01 1 2341873 2341873 C G PEX10 Missense_Mutation p.E44Q 0.06 tolerated(0.14) benign(0.053) TCGA-EL-A3H7-01 20 30753110 30753110 G A TM9SF4 Missense_Mutation p.E598K 0.14 tolerated(1) possibly_damaging(0.793) TCGA-EL-A3H7-01 21 34635187 34635187 G C IFNAR2 Missense_Mutation p.K310N 0.12 deleterious(0) probably_damaging(0.981) TCGA-EL-A3H7-01 3 108076828 108076828 C G HHLA2 Missense_Mutation p.L275V 0.15 tolerated(0.16) benign(0.266) TCGA-EL-A3H7-01 5 138856911 138856911 C T TMEM173 Intron 0.11 TCGA-EL-A3H7-01 5 140222759 140222759 C G PCDHA8 Missense_Mutation p.P618R 0.03 deleterious_low_confidence(0.03) benign(0.001) TCGA-EL-A3H7-01 6 4069208 4069211 TGAA - FAM217A Frame_Shift_Del p.F416Nfs*33 0.27 TCGA-EL-A3H7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EL-A3H7-01 7 5662664 5662664 G T RNF216 Missense_Mutation p.P867T 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EL-A3H7-01 8 145732033 145732033 C T GPT Silent p.R427R 0.41 TCGA-EL-A3H7-01 9 136915622 136915622 G A BRD3 Silent p.I196I 0.07 TCGA-EL-A3H7-01 X 41010209 41010209 C A USP9X Silent p.R554R 0.09 TCGA-EL-A3H7-01 X 47308077 47308077 A G ZNF41 Silent p.F364F 0.33 TCGA-EL-A3H7-01 X 54209023 54209023 G T FAM120C Missense_Mutation p.N203K 0.32 deleterious(0.04) benign(0.028) TCGA-EL-A3H8-01 11 82935987 82935987 A G ANKRD42 Missense_Mutation p.N198S 0.40 tolerated(0.05) probably_damaging(0.999) TCGA-EL-A3H8-01 17 62512852 62512852 C T CEP95 Nonsense_Mutation p.Q127* 0.31 TCGA-EL-A3H8-01 17 7736520 7736520 C A DNAH2 Missense_Mutation p.S4370R 0.10 possibly_damaging(0.686) TCGA-EL-A3H8-01 17 78410037 78410037 G A ENDOV 3'UTR 0.08 TCGA-EL-A3H8-01 19 58992084 58992084 G A ZNF446 Silent p.E448E 0.03 TCGA-EL-A3H8-01 1 181735734 181735734 T C CACNA1E Missense_Mutation p.I1623T 0.50 deleterious(0) benign(0.415) TCGA-EL-A3H8-01 1 227935556 227935556 G A SNAP47 Missense_Mutation p.S85N 0.07 deleterious(0.05) benign(0.19) TCGA-EL-A3H8-01 1 983247 983247 G A AGRN Silent p.L1241L 0.08 TCGA-EL-A3H8-01 2 141245239 141245239 G A LRP1B Nonsense_Mutation p.R3064* 0.06 TCGA-EL-A3H8-01 3 126226844 126226844 C T UROC1 Missense_Mutation p.R169H 0.08 deleterious(0.01) benign(0.115) TCGA-EL-A3H8-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EL-A3H8-01 X 154282927 154282927 C T FUNDC2 Silent p.L184L 0.04 TCGA-EL-A3MW-01 12 117962864 117962864 A T KSR2 Missense_Mutation p.L671H 0.05 deleterious(0.02) possibly_damaging(0.896) TCGA-EL-A3MW-01 12 51663133 51663133 C A SMAGP Intron 0.13 TCGA-EL-A3MW-01 16 22268620 22268620 T A EEF2K Missense_Mutation p.V272E 0.03 deleterious(0) probably_damaging(0.988) TCGA-EL-A3MW-01 17 78079688 78079688 C T GAA Silent p.R229R 0.11 TCGA-EL-A3MW-01 17 8647917 8647917 C T CCDC42 Missense_Mutation p.G4D 0.39 tolerated(0.13) probably_damaging(0.999) TCGA-EL-A3MW-01 18 50866169 50866169 C A DCC Missense_Mutation p.P751T 0.06 tolerated(0.08) possibly_damaging(0.713) TCGA-EL-A3MW-01 4 37836265 37836265 A G PGM2 Missense_Mutation p.Q92R 0.44 tolerated(0.35) benign(0.063) TCGA-EL-A3MW-01 6 44119647 44119647 G T TMEM63B Missense_Mutation p.G580C 0.46 deleterious(0) probably_damaging(1) TCGA-EL-A3MW-01 7 100014704 100014704 G A ZCWPW1 Missense_Mutation p.T155I 0.05 deleterious(0.04) benign(0.008) TCGA-EL-A3MW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-EL-A3MX-01 10 127548295 127548295 A G DHX32 Silent p.P242P 0.15 TCGA-EL-A3MX-01 11 19246838 19246838 T A E2F8 Missense_Mutation p.N784I 0.11 tolerated(0.45) benign(0.003) TCGA-EL-A3MX-01 12 57640655 57640655 C T STAC3 Missense_Mutation p.E179K 0.05 deleterious(0.01) benign(0.343) TCGA-EL-A3MX-01 14 102549628 102549628 C T HSP90AA1 Missense_Mutation p.D622N 0.06 deleterious_low_confidence(0.04) unknown(0) TCGA-EL-A3MX-01 14 105421471 105421471 C T AHNAK2 Silent p.Q158Q 0.05 TCGA-EL-A3MX-01 14 20859812 20859812 G C TEP1 Silent p.V681V 0.10 TCGA-EL-A3MX-01 14 45656993 45656993 T C FANCM Missense_Mutation p.M1561T 0.62 deleterious(0) probably_damaging(0.998) TCGA-EL-A3MX-01 16 56501895 56501895 G - OGFOD1 Frame_Shift_Del p.E289Kfs*7 0.13 TCGA-EL-A3MX-01 16 72831862 72831863 - A ZFHX3 Frame_Shift_Ins p.L1573Ffs*25 0.09 TCGA-EL-A3MX-01 17 18022097 18022097 A G MYO15A 5'UTR 0.18 TCGA-EL-A3MX-01 17 1943643 1943643 G A DPH1 Missense_Mutation p.R299H 0.18 deleterious(0) probably_damaging(1) TCGA-EL-A3MX-01 17 29196274 29196274 G A ATAD5 Missense_Mutation p.G1108S 0.15 tolerated(0.11) benign(0.002) TCGA-EL-A3MX-01 17 61744386 61744387 - C MAP3K3 Frame_Shift_Ins p.E190Rfs*26 0.30 TCGA-EL-A3MX-01 19 12577553 12577553 T C ZNF709 Missense_Mutation p.N39D 0.11 deleterious(0.01) possibly_damaging(0.706) TCGA-EL-A3MX-01 19 14003691 14003691 T C C19orf57 Missense_Mutation p.R101G 0.42 deleterious(0) possibly_damaging(0.765) TCGA-EL-A3MX-01 19 2827692 2827692 C T ZNF554 Silent p.N68N 0.23 TCGA-EL-A3MX-01 1 160105253 160105253 G A ATP1A2 Silent p.G715G 0.04 TCGA-EL-A3MX-01 1 7837370 7837370 A T VAMP3 Missense_Mutation p.N75Y 0.10 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EL-A3MX-01 20 62198499 62198499 C - HELZ2 Frame_Shift_Del p.V738Sfs*62 0.23 TCGA-EL-A3MX-01 2 219029655 219029655 T C CXCR1 Missense_Mutation p.I94V 0.31 tolerated(0.28) benign(0.05) TCGA-EL-A3MX-01 2 50149344 50149344 G C NRXN1 Missense_Mutation p.A1461G 0.35 tolerated(0.36) benign(0.002) TCGA-EL-A3MX-01 2 70188128 70188128 G A ASPRV1 Silent p.G231G 0.07 TCGA-EL-A3MX-01 3 111671550 111671550 C T PHLDB2 Silent p.I921I 0.19 TCGA-EL-A3MX-01 3 185766571 185766571 G A ETV5 Missense_Mutation p.R464C 0.45 deleterious(0) probably_damaging(0.996) TCGA-EL-A3MX-01 3 49062646 49062646 G A IMPDH2 Missense_Mutation p.R355W 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-EL-A3MX-01 4 4276212 4276212 G A LYAR Silent p.V238V 0.46 TCGA-EL-A3MX-01 5 14293176 14293176 T C TRIO Missense_Mutation p.I370T 0.29 possibly_damaging(0.864) TCGA-EL-A3MX-01 6 33141287 33141287 C G COL11A2 Missense_Mutation p.G806R 0.10 probably_damaging(0.979) TCGA-EL-A3MX-01 6 33744785 33744785 T C LEMD2 Missense_Mutation p.Y436C 0.13 deleterious(0.01) probably_damaging(0.964) TCGA-EL-A3MX-01 6 37225722 37225722 G A TBC1D22B Nonsense_Mutation p.W10* 0.16 TCGA-EL-A3MX-01 6 90368423 90368423 G A MDN1 Missense_Mutation p.S4976F 0.08 unknown(0) TCGA-EL-A3MX-01 7 100086968 100086968 G T NYAP1 Missense_Mutation p.V542L 0.52 tolerated(0.07) benign(0.004) TCGA-EL-A3MX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-EL-A3MX-01 7 27570874 27570874 C A HIBADH Silent p.V263V 0.08 TCGA-EL-A3MX-01 7 72657592 72657592 C T GTF2IRD2P1 RNA 0.24 TCGA-EL-A3MX-01 7 72718830 72718830 G A NSUN5 Silent p.D223D 0.07 TCGA-EL-A3MX-01 8 124992869 124992869 G T FER1L6 Missense_Mutation p.A410S 0.15 tolerated(0.5) benign(0.028) TCGA-EL-A3MX-01 9 36118962 36118962 C G RECK Missense_Mutation p.P821R 0.04 deleterious(0) benign(0.222) TCGA-EL-A3MX-01 X 136112949 136112949 C G GPR101 Missense_Mutation p.E295D 0.10 tolerated_low_confidence(0.21) benign(0.346) TCGA-EL-A3MX-01 X 15364163 15364163 T A FIGF 3'UTR 0.17 TCGA-EL-A3MY-01 10 123842613 123842613 A G TACC2 Missense_Mutation p.M200V 0.35 benign(0) TCGA-EL-A3MY-01 10 5781833 5781833 A C FAM208B Missense_Mutation p.D567A 0.35 tolerated(0.15) benign(0.175) TCGA-EL-A3MY-01 11 118209888 118209888 G A CD3D Missense_Mutation p.R169W 0.21 deleterious(0) probably_damaging(0.988) TCGA-EL-A3MY-01 13 100637729 100637729 T G ZIC2 Silent p.A464A 0.08 TCGA-EL-A3MY-01 15 40914196 40914196 C T CASC5 Silent p.H604H 0.08 TCGA-EL-A3MY-01 15 44093364 44093364 A G HYPK Missense_Mutation p.E74G 0.17 deleterious(0.02) benign(0.141) TCGA-EL-A3MY-01 16 64984728 64984728 G A CDH11 Silent p.N612N 0.31 TCGA-EL-A3MY-01 17 30687706 30687706 C A ZNF207 Missense_Mutation p.Q133K 0.05 tolerated(0.29) possibly_damaging(0.486) TCGA-EL-A3MY-01 19 13565980 13565980 C T CACNA1A Missense_Mutation p.V114I 0.25 benign(0.208) TCGA-EL-A3MY-01 1 20517954 20517954 G A UBXN10 3'UTR 0.38 TCGA-EL-A3MY-01 1 249211207 249211207 G T PGBD2 Missense_Mutation p.V142L 0.29 tolerated(0.13) possibly_damaging(0.604) TCGA-EL-A3MY-01 2 179402314 179402314 T C TTN Missense_Mutation p.Y33207C 0.07 TCGA-EL-A3MY-01 2 219000635 219000635 G A CXCR2 3'UTR 0.23 TCGA-EL-A3MY-01 2 227875182 227875182 C G COL4A4 Missense_Mutation p.G1457R 0.21 unknown(0) TCGA-EL-A3MY-01 4 111539506 111539506 A T PITX2 Missense_Mutation p.N250K 0.28 tolerated(0.06) probably_damaging(0.994) TCGA-EL-A3MY-01 5 2748624 2748624 C A IRX2 Missense_Mutation p.A400S 0.32 tolerated(0.72) probably_damaging(0.964) TCGA-EL-A3MY-01 6 170628184 170628184 C T FAM120B Missense_Mutation p.T569I 0.24 tolerated(0.09) possibly_damaging(0.848) TCGA-EL-A3MY-01 6 20486987 20486987 G T E2F3 Missense_Mutation p.V318L 0.22 deleterious(0) benign(0.131) TCGA-EL-A3MY-01 7 100033362 100033362 G C PPP1R35 Silent p.L160L 0.33 TCGA-EL-A3MY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-EL-A3MY-01 7 16839390 16839390 T C AGR2 Missense_Mutation p.Q103R 0.25 tolerated(0.09) benign(0.124) TCGA-EL-A3MY-01 X 41043681 41043682 - A USP9X Frame_Shift_Ins p.P1105Tfs*4 0.26 TCGA-EL-A3MZ-01 11 71950915 71950915 C T PHOX2A Missense_Mutation p.A245T 0.27 tolerated_low_confidence(0.76) unknown(0) TCGA-EL-A3MZ-01 12 123805012 123805012 G A SBNO1 Silent p.I878I 0.25 TCGA-EL-A3MZ-01 12 18237559 18237559 C T RERGL Nonsense_Mutation p.W76* 0.35 TCGA-EL-A3MZ-01 13 52971586 52971586 C T THSD1 Missense_Mutation p.V268I 0.27 tolerated(0.5) benign(0.021) TCGA-EL-A3MZ-01 15 74703138 74703138 G A SEMA7A Missense_Mutation p.H610Y 0.37 tolerated(0.16) possibly_damaging(0.703) TCGA-EL-A3MZ-01 16 3614041 3614041 C T NLRC3 Silent p.E346E 0.05 TCGA-EL-A3MZ-01 16 69727910 69727910 A T NFAT5 Missense_Mutation p.L1394F 0.32 benign(0.33) TCGA-EL-A3MZ-01 17 74057570 74057571 - AA SRP68 Intron 0.24 TCGA-EL-A3MZ-01 17 74398184 74398184 G A UBE2O Silent p.G237G 0.05 TCGA-EL-A3MZ-01 19 48869181 48869181 G T SYNGR4 Missense_Mutation p.V28F 0.45 tolerated(0.06) benign(0.424) TCGA-EL-A3MZ-01 19 52719042 52719042 C T PPP2R1A Missense_Mutation p.A273V 0.30 tolerated(0.1) benign(0.036) TCGA-EL-A3MZ-01 1 100154340 100154340 C T PALMD Missense_Mutation p.A175V 0.26 tolerated(0.06) possibly_damaging(0.905) TCGA-EL-A3MZ-01 1 145578441 145578441 A G PIAS3 Missense_Mutation p.Y135C 0.08 deleterious(0) probably_damaging(1) TCGA-EL-A3MZ-01 1 160124992 160124992 C T ATP1A4 Missense_Mutation p.A122V 0.05 deleterious(0.04) probably_damaging(0.993) TCGA-EL-A3MZ-01 20 62669792 62669792 G A ZNF512B Intron 0.12 TCGA-EL-A3MZ-01 2 100623626 100623626 G A AFF3 Silent p.D182D 0.37 TCGA-EL-A3MZ-01 2 26679468 26679468 C T DRC1 3'UTR 0.42 TCGA-EL-A3MZ-01 3 38357110 38357110 G T SLC22A14 Silent p.T480T 0.35 TCGA-EL-A3MZ-01 3 38523689 38523689 G C ACVR2B Missense_Mutation p.V359L 0.27 deleterious(0.02) possibly_damaging(0.49) TCGA-EL-A3MZ-01 3 48637950 48637950 T A UQCRC1 Missense_Mutation p.N393I 0.37 deleterious(0.02) probably_damaging(0.992) TCGA-EL-A3MZ-01 4 69197877 69197877 T C YTHDC1 Missense_Mutation p.R356G 0.20 deleterious(0) probably_damaging(0.991) TCGA-EL-A3MZ-01 5 1293592 1293592 C T TERT Missense_Mutation p.R470H 0.43 tolerated(0.39) benign(0.013) TCGA-EL-A3MZ-01 5 32243628 32243630 TGA - MTMR12 In_Frame_Del p.I366del 0.18 TCGA-EL-A3MZ-01 6 160464296 160464296 G A IGF2R Missense_Mutation p.E533K 0.31 tolerated(0.41) benign(0.036) TCGA-EL-A3MZ-01 6 99848406 99848406 A - PNISR 3'UTR 0.36 TCGA-EL-A3MZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-EL-A3MZ-01 7 148288066 148288066 C A C7orf33 Missense_Mutation p.L17I 0.25 tolerated_low_confidence(0.1) possibly_damaging(0.567) TCGA-EL-A3MZ-01 7 42971806 42971806 G A MRPL32 5'UTR 0.38 TCGA-EL-A3MZ-01 7 99032844 99032844 G A ATP5J2-PTCD1 Nonsense_Mutation p.R57* 0.14 TCGA-EL-A3MZ-01 8 42015502 42015514 TAGTTGTGGTTTA - AP3M2 Frame_Shift_Del p.V107Rfs*24 0.17 TCGA-EL-A3MZ-01 8 94747584 94747584 G A RBM12B Missense_Mutation p.P352L 0.29 tolerated(0.66) probably_damaging(1) TCGA-EL-A3MZ-01 X 8504900 8504900 G T KAL1 Silent p.S511S 0.15 TCGA-EL-A3N2-01 12 132625900 132625900 C T DDX51 Silent p.A390A 0.36 TCGA-EL-A3N2-01 19 49575500 49575500 G A KCNA7 Missense_Mutation p.P115S 0.07 deleterious(0.04) benign(0.016) TCGA-EL-A3N2-01 19 56539568 56539568 G A NLRP5 Missense_Mutation p.V657I 0.38 tolerated(0.15) benign(0.147) TCGA-EL-A3N2-01 1 110950445 110950445 C T LAMTOR5 Missense_Mutation p.S15N 0.45 tolerated_low_confidence(0.13) benign(0.383) TCGA-EL-A3N2-01 1 17085177 17085177 G C MST1L RNA 0.10 TCGA-EL-A3N2-01 22 39262611 39262611 G A CBX6 Missense_Mutation p.P281L 0.52 deleterious(0) possibly_damaging(0.908) TCGA-EL-A3N2-01 3 54919331 54919331 G A CACNA2D3 Missense_Mutation p.D646N 0.36 tolerated(0.19) probably_damaging(0.995) TCGA-EL-A3N2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EL-A3N2-01 9 37537802 37537802 C T FBXO10 Missense_Mutation p.V242I 0.32 tolerated(1) benign(0.002) TCGA-EL-A3N2-01 X 102339349 102339349 T A NXF3 Missense_Mutation p.E91V 0.39 tolerated(0.29) probably_damaging(0.924) TCGA-EL-A3N2-01 X 99920610 99920610 G A SRPX2 Missense_Mutation p.R246Q 0.36 tolerated(0.65) benign(0.003) TCGA-EL-A3N3-01 10 27538642 27538642 G C RP11-85G18.6 Intron 0.16 TCGA-EL-A3N3-01 11 61605361 61605361 G A FADS2 Splice_Site p.X106_splice 0.07 TCGA-EL-A3N3-01 12 113532726 113532726 G C DTX1 Missense_Mutation p.V454L 0.33 tolerated(1) benign(0.216) TCGA-EL-A3N3-01 12 113541981 113541981 G A RASAL1 Silent p.T652T 0.20 TCGA-EL-A3N3-01 1 6194802 6194802 G C CHD5 Silent p.P996P 0.29 TCGA-EL-A3N3-01 2 198640461 198640461 C G BOLL Missense_Mutation p.E106Q 0.19 tolerated(0.08) benign(0.36) TCGA-EL-A3N3-01 2 26700345 26700345 T C OTOF Missense_Mutation p.Q782R 0.11 tolerated(0.51) benign(0.131) TCGA-EL-A3N3-01 2 85533408 85533408 A T TCF7L1 Missense_Mutation p.M357L 0.28 deleterious(0) probably_damaging(0.974) TCGA-EL-A3N3-01 3 123420311 123420311 C T MYLK Silent p.Q812Q 0.15 TCGA-EL-A3N3-01 5 167655023 167655023 T C TENM2 Missense_Mutation p.I1803T 0.36 deleterious(0.03) benign(0.297) TCGA-EL-A3N3-01 6 126661490 126661490 G A CENPW Missense_Mutation p.R24Q 0.33 tolerated(0.1) possibly_damaging(0.579) TCGA-EL-A3N3-01 6 152590391 152590391 C A SYNE1 Missense_Mutation p.V6202F 0.23 benign(0.027) TCGA-EL-A3N3-01 6 90384187 90384187 T A MDN1 Missense_Mutation p.M4295L 0.34 benign(0.032) TCGA-EL-A3N3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-EL-A3N3-01 7 150655461 150655461 G A KCNH2 Missense_Mutation p.T201M 0.27 tolerated(0.09) benign(0.067) TCGA-EL-A3N3-01 8 22009364 22009364 T C LGI3 Missense_Mutation p.E215G 0.28 tolerated(0.07) benign(0.177) TCGA-EL-A3N3-01 X 75004811 75004811 T C MAGEE2 Missense_Mutation p.I26V 0.21 tolerated_low_confidence(0.33) benign(0) TCGA-EL-A3T0-01 10 37414918 37414918 T C ANKRD30A Missense_Mutation p.I12T 0.06 tolerated(0.22) benign(0.004) TCGA-EL-A3T0-01 11 48146708 48146708 G C PTPRJ Missense_Mutation p.G355R 0.15 deleterious(0) probably_damaging(0.998) TCGA-EL-A3T0-01 11 64879505 64879506 CC - TM7SF2 Frame_Shift_Del p.R8Gfs*93 0.31 TCGA-EL-A3T0-01 11 76867737 76867737 A G MYO7A Missense_Mutation p.T168A 0.03 deleterious(0) probably_damaging(0.997) TCGA-EL-A3T0-01 13 101278051 101278051 G A TMTC4 Missense_Mutation p.A561V 0.07 deleterious(0) probably_damaging(0.976) TCGA-EL-A3T0-01 14 45579424 45579424 G A PRPF39 Splice_Site p.X435_splice 0.07 TCGA-EL-A3T0-01 19 12739914 12739914 A G ZNF791 Missense_Mutation p.Y524C 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-EL-A3T0-01 19 16268442 16268442 G A HSH2D 3'Flank 0.13 TCGA-EL-A3T0-01 19 16799119 16799119 C T TMEM38A Silent p.P279P 0.24 TCGA-EL-A3T0-01 19 9640216 9640216 T C ZNF426 Missense_Mutation p.S169G 0.09 deleterious(0.01) benign(0.039) TCGA-EL-A3T0-01 1 67833673 67833673 G A IL12RB2 Missense_Mutation p.R475Q 0.15 deleterious(0.01) probably_damaging(0.978) TCGA-EL-A3T0-01 20 44581287 44581287 C T ZNF335 Missense_Mutation p.G922S 0.24 tolerated(0.58) benign(0.002) TCGA-EL-A3T0-01 22 51044095 51044095 G A MAPK8IP2 Silent p.T648T 0.04 TCGA-EL-A3T0-01 2 32475708 32475708 C A NLRC4 Nonsense_Mutation p.E409* 0.07 TCGA-EL-A3T0-01 3 183856019 183856019 C T EIF2B5 Silent p.S250S 0.08 TCGA-EL-A3T0-01 6 142468447 142468447 C A VTA1 Missense_Mutation p.P8H 0.05 deleterious(0) unknown(0) TCGA-EL-A3T0-01 6 76751728 76751728 G A IMPG1 Silent p.F61F 0.13 TCGA-EL-A3T0-01 9 100092841 100092841 C G CCDC180 Missense_Mutation p.S733C 0.31 deleterious(0.01) probably_damaging(0.989) TCGA-EL-A3T0-01 X 20044031 20044031 C T MAP7D2 Silent p.T349T 0.13 TCGA-EL-A3T1-01 10 46999778 46999778 G A GPRIN2 Missense_Mutation p.A300T 0.21 tolerated(1) benign(0.001) TCGA-EL-A3T1-01 16 57238772 57238772 G A RSPRY1 Missense_Mutation p.V68I 0.04 tolerated(0.28) benign(0) TCGA-EL-A3T1-01 17 37009327 37009327 C G RPL23 Silent p.R15R 0.17 TCGA-EL-A3T1-01 18 72632682 72632682 A G ZNF407 Intron 0.14 TCGA-EL-A3T1-01 19 40319135 40319135 G A DYRK1B Silent p.N203N 0.08 TCGA-EL-A3T1-01 19 9057556 9057556 C T MUC16 Missense_Mutation p.G9964R 0.04 unknown(0) TCGA-EL-A3T1-01 1 241665851 241665851 C A FH Missense_Mutation p.Q376H 0.35 deleterious(0) probably_damaging(1) TCGA-EL-A3T1-01 2 97909697 97909697 A G ANKRD36 Silent p.T1500T 0.27 TCGA-EL-A3T1-01 3 113098181 113098181 G A WDR52 Missense_Mutation p.S757L 0.24 tolerated(0.05) probably_damaging(0.973) TCGA-EL-A3T1-01 3 122259432 122259432 A G PARP9 Missense_Mutation p.I586T 0.32 deleterious(0) benign(0.335) TCGA-EL-A3T1-01 4 47839953 47839953 G C CORIN Missense_Mutation p.P5R 0.07 deleterious_low_confidence(0.01) benign(0.01) TCGA-EL-A3T1-01 5 1253905 1253905 T - TERT Frame_Shift_Del p.T1113Lfs*62 0.13 TCGA-EL-A3T1-01 6 117686282 117686282 G T ROS1 Missense_Mutation p.P1020H 0.35 deleterious(0) probably_damaging(1) TCGA-EL-A3T1-01 6 29430159 29430159 G A OR2H1 Missense_Mutation p.V205M 0.30 deleterious(0.01) possibly_damaging(0.509) TCGA-EL-A3T1-01 6 87964746 87964746 G T ZNF292 Missense_Mutation p.V467L 0.33 deleterious(0) probably_damaging(0.986) TCGA-EL-A3T1-01 7 101870709 101870709 G T CUX1 Nonsense_Mutation p.E1076* 0.14 TCGA-EL-A3T1-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-EL-A3T2-01 12 121877692 121877692 G T KDM2B Missense_Mutation p.T1266N 0.23 deleterious(0) probably_damaging(0.98) TCGA-EL-A3T2-01 12 31600669 31600669 A G DENND5B Missense_Mutation p.L555P 0.12 deleterious(0) probably_damaging(0.995) TCGA-EL-A3T2-01 14 23858160 23858160 G A MYH6 Silent p.R1361R 0.04 TCGA-EL-A3T2-01 14 76101253 76101253 G C FLVCR2 Missense_Mutation p.G341R 0.10 deleterious(0) benign(0.141) TCGA-EL-A3T2-01 18 66367682 66367682 T C TMX3 Missense_Mutation p.T118A 0.09 deleterious(0) probably_damaging(0.98) TCGA-EL-A3T2-01 19 1828209 1828209 T C REXO1 Silent p.G193G 0.09 TCGA-EL-A3T2-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.44 tolerated(0.06) benign(0.006) TCGA-EL-A3T2-01 1 155168008 155168008 T C THBS3 Missense_Mutation p.N693S 0.31 deleterious(0.02) benign(0.411) TCGA-EL-A3T2-01 21 32185391 32185391 C T KRTAP8-1 Missense_Mutation p.G50R 0.05 tolerated_low_confidence(0.49) probably_damaging(0.995) TCGA-EL-A3T2-01 2 170843170 170843170 A T UBR3 Missense_Mutation p.D1217V 0.09 deleterious(0.05) possibly_damaging(0.892) TCGA-EL-A3T2-01 2 210658442 210658442 A G UNC80 Splice_Site p.X267_splice 0.04 TCGA-EL-A3T2-01 3 156009570 156009570 G T KCNAB1 Intron 0.50 TCGA-EL-A3T2-01 3 65365210 65365210 C T MAGI1 Silent p.E907E 0.36 TCGA-EL-A3T2-01 3 81699052 81699052 G A GBE1 Silent p.S150S 0.07 TCGA-EL-A3T2-01 4 178897099 178897099 T C LINC01098 Splice_Site p.X100_splice 0.05 TCGA-EL-A3T2-01 5 37001181 37001181 G A NIPBL Splice_Site p.X1222_splice 0.40 TCGA-EL-A3T2-01 6 38854566 38854566 G C DNAH8 Splice_Site p.X2537_splice 0.08 TCGA-EL-A3T2-01 7 26224962 26224962 T C NFE2L3 Silent p.P548P 0.04 TCGA-EL-A3T2-01 7 48065506 48065506 C A SUN3 Missense_Mutation p.S51I 0.10 deleterious_low_confidence(0) possibly_damaging(0.494) TCGA-EL-A3T2-01 8 38187086 38187086 G A WHSC1L1 Missense_Mutation p.P464L 0.43 deleterious(0.03) possibly_damaging(0.673) TCGA-EL-A3T2-01 9 137779025 137779025 A G FCN2 Missense_Mutation p.T236A 0.06 tolerated(0.09) benign(0.003) TCGA-EL-A3T2-01 9 86258573 86258573 T C IDNK Silent p.L148L 0.03 TCGA-EL-A3T2-01 X 123211862 123211862 T G STAG2 Missense_Mutation p.I910R 0.26 deleterious(0.01) possibly_damaging(0.776) TCGA-EL-A3T3-01 10 113920471 113920471 G A GPAM Silent p.S550S 0.44 TCGA-EL-A3T3-01 10 128193188 128193188 G A C10orf90 Missense_Mutation p.A194V 0.04 tolerated(0.32) benign(0.178) TCGA-EL-A3T3-01 11 123753862 123753862 C T TMEM225 Missense_Mutation p.V221I 0.37 deleterious(0.01) benign(0.433) TCGA-EL-A3T3-01 11 55659057 55659057 T C TRIM51 Silent p.N436N 0.05 TCGA-EL-A3T3-01 13 114469169 114469169 G A TMEM255B Missense_Mutation p.G43E 0.46 deleterious(0) probably_damaging(1) TCGA-EL-A3T3-01 13 21562776 21562776 C A LATS2 Silent p.L381L 0.07 TCGA-EL-A3T3-01 15 38810529 38810529 T G RASGRP1 Missense_Mutation p.E162A 0.53 tolerated(0.48) benign(0.04) TCGA-EL-A3T3-01 17 65871028 65871028 G C BPTF Missense_Mutation p.D586H 0.07 possibly_damaging(0.456) TCGA-EL-A3T3-01 1 33123032 33123032 G A RBBP4 Missense_Mutation p.E57K 0.06 tolerated(0.58) benign(0.089) TCGA-EL-A3T3-01 1 35870639 35870639 A G ZMYM4 Missense_Mutation p.I1182V 0.06 tolerated(1) benign(0.001) TCGA-EL-A3T3-01 20 19677526 19677526 G T SLC24A3 Missense_Mutation p.C526F 0.03 deleterious(0) probably_damaging(0.988) TCGA-EL-A3T3-01 20 44815233 44815233 T C CDH22 Missense_Mutation p.I553V 0.03 tolerated(0.26) benign(0.005) TCGA-EL-A3T3-01 20 61542301 61542301 C T DIDO1 Missense_Mutation p.D222N 0.05 benign(0.036) TCGA-EL-A3T3-01 2 99439944 99439944 G A KIAA1211L Silent p.N264N 0.14 TCGA-EL-A3T3-01 2 99778836 99778836 C G LIPT1 Missense_Mutation p.A139G 0.06 tolerated(0.37) benign(0.002) TCGA-EL-A3T3-01 3 54919542 54919542 C A CACNA2D3 Missense_Mutation p.P662H 0.11 tolerated(0.1) benign(0.022) TCGA-EL-A3T3-01 4 8588779 8588779 A T GPR78 Splice_Site p.X261_splice 0.39 TCGA-EL-A3T3-01 5 150400185 150400185 C T GPX3 5'UTR 0.30 TCGA-EL-A3T3-01 5 38352357 38352357 G A EGFLAM Missense_Mutation p.E157K 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.786) TCGA-EL-A3T3-01 6 168352394 168352394 C G MLLT4 Missense_Mutation p.Q1447E 0.06 deleterious_low_confidence(0.05) benign(0.185) TCGA-EL-A3T3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-EL-A3T3-01 9 101017574 101017574 C G TBC1D2 Missense_Mutation p.A84P 0.07 tolerated(0.45) benign(0.375) TCGA-EL-A3T6-01 10 115345549 115345549 C A HABP2 Intron 0.34 TCGA-EL-A3T6-01 14 102466737 102466737 G T DYNC1H1 Splice_Site p.X1358_splice 0.29 TCGA-EL-A3T6-01 1 154947299 154947299 G A CKS1B Intron 0.05 TCGA-EL-A3T6-01 1 216390846 216390846 A G USH2A Missense_Mutation p.C1014R 0.28 probably_damaging(0.998) TCGA-EL-A3T6-01 20 8769097 8769097 T C PLCB1 Missense_Mutation p.L1038P 0.12 tolerated(0.27) probably_damaging(0.968) TCGA-EL-A3T6-01 21 46624644 46624644 G C ADARB1 Missense_Mutation p.L620F 0.42 tolerated(0.05) probably_damaging(0.991) TCGA-EL-A3T6-01 4 106601200 106601200 C T ARHGEF38 3'UTR 0.29 TCGA-EL-A3T6-01 4 81124557 81124557 C T PRDM8 Silent p.H647H 0.32 TCGA-EL-A3T6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-EL-A3T6-01 9 34107509 34107509 C A DCAF12 Missense_Mutation p.D130Y 0.16 deleterious(0) possibly_damaging(0.903) TCGA-EL-A3T7-01 15 72767235 72767235 C T ARIH1 Silent p.G85G 0.15 TCGA-EL-A3T7-01 16 67424874 67424874 T A TPPP3 Silent p.G47G 0.23 TCGA-EL-A3T7-01 17 27020729 27020729 G C SUPT6H Missense_Mutation p.D1217H 0.23 deleterious(0) probably_damaging(0.984) TCGA-EL-A3T7-01 19 4433112 4433112 G A CHAF1A Missense_Mutation p.S750N 0.07 tolerated(0.08) possibly_damaging(0.766) TCGA-EL-A3T7-01 1 18014116 18014116 G T ARHGEF10L Missense_Mutation p.V1020L 0.46 deleterious(0.02) benign(0.064) TCGA-EL-A3T7-01 2 95947921 95947921 G A PROM2 Missense_Mutation p.V559I 0.06 tolerated(0.13) possibly_damaging(0.463) TCGA-EL-A3T7-01 6 127608035 127608035 G C RNF146 Missense_Mutation p.E93Q 0.43 tolerated(0.05) possibly_damaging(0.894) TCGA-EL-A3T7-01 6 127608036 127608036 A T RNF146 Missense_Mutation p.E93V 0.43 deleterious(0) probably_damaging(0.926) TCGA-EL-A3T7-01 6 57037528 57037528 C G BAG2 Missense_Mutation p.N11K 0.50 tolerated(0.66) benign(0.018) TCGA-EL-A3T7-01 7 129102860 129102860 G A STRIP2 Silent p.L510L 0.04 TCGA-EL-A3T7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-EL-A3T7-01 X 99955909 99955909 G A SYTL4 Missense_Mutation p.R175W 0.08 deleterious(0.02) benign(0.386) TCGA-EL-A3T8-01 10 7242431 7242431 C A SFMBT2 Silent p.V501V 0.45 TCGA-EL-A3T8-01 10 85972907 85972907 G C CDHR1 Missense_Mutation p.E615Q 0.05 tolerated(0.23) benign(0.292) TCGA-EL-A3T8-01 14 90430003 90430003 C A TDP1 Missense_Mutation p.A182D 0.07 deleterious(0) probably_damaging(0.994) TCGA-EL-A3T8-01 18 55247321 55247321 C T FECH Missense_Mutation p.V60I 0.05 tolerated(0.2) benign(0.006) TCGA-EL-A3T8-01 2 203590986 203590986 G T FAM117B Missense_Mutation p.R287L 0.04 deleterious(0) probably_damaging(0.996) TCGA-EL-A3T8-01 2 207169562 207169562 G A ZDBF2 Missense_Mutation p.E104K 0.34 tolerated(0.91) benign(0.305) TCGA-EL-A3T8-01 3 184429158 184429158 G A MAGEF1 Missense_Mutation p.P151L 0.34 deleterious(0.01) probably_damaging(0.928) TCGA-EL-A3T8-01 7 127963614 127963614 C T RBM28 Missense_Mutation p.G457D 0.04 deleterious(0) probably_damaging(1) TCGA-EL-A3T8-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-EL-A3T8-01 8 104066176 104066176 G A ATP6V1C1 Missense_Mutation p.E180K 0.08 deleterious(0.02) possibly_damaging(0.492) TCGA-EL-A3T9-01 10 17146591 17146591 C A CUBN Missense_Mutation p.G415V 0.20 deleterious(0) probably_damaging(0.987) TCGA-EL-A3T9-01 11 128332410 128332410 C T ETS1 Missense_Mutation p.R435H 0.32 deleterious(0) possibly_damaging(0.89) TCGA-EL-A3T9-01 11 129034254 129034254 G T ARHGAP32 Missense_Mutation p.P62H 0.17 deleterious(0) probably_damaging(0.999) TCGA-EL-A3T9-01 11 76871246 76871246 G A MYO7A Missense_Mutation p.R373H 0.11 tolerated(0.62) probably_damaging(0.941) TCGA-EL-A3T9-01 12 122359381 122359381 C T WDR66 Missense_Mutation p.T57M 0.22 tolerated_low_confidence(0.11) benign(0.001) TCGA-EL-A3T9-01 14 59930877 59930877 G A GPR135 Silent p.A356A 0.22 TCGA-EL-A3T9-01 15 88679156 88679156 T G NTRK3 Missense_Mutation p.N294T 0.35 tolerated(0.09) possibly_damaging(0.621) TCGA-EL-A3T9-01 16 30510706 30510706 C T ITGAL Missense_Mutation p.R681W 0.24 deleterious(0) probably_damaging(0.991) TCGA-EL-A3T9-01 19 5915243 5915243 G A CAPS Silent p.A160A 0.31 TCGA-EL-A3T9-01 19 8576745 8576745 G A ZNF414 Silent p.P210P 0.33 TCGA-EL-A3T9-01 1 147380580 147380580 C A GJA8 Silent p.I166I 0.41 TCGA-EL-A3T9-01 1 9642501 9642501 C T SLC25A33 Missense_Mutation p.A303V 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-EL-A3T9-01 20 61941834 61941834 C T COL20A1 Silent p.G455G 0.19 TCGA-EL-A3T9-01 21 47532397 47532397 C T COL6A2 Missense_Mutation p.T207M 0.31 tolerated(0.11) benign(0.052) TCGA-EL-A3T9-01 22 22453352 22453352 C T IGLV8-61 Missense_Mutation p.S33L 0.32 deleterious(0) benign(0.184) TCGA-EL-A3T9-01 22 26695087 26695087 A C SEZ6L Missense_Mutation p.I434L 0.21 tolerated(1) benign(0.012) TCGA-EL-A3T9-01 22 37769205 37769205 G A ELFN2 Silent p.H790H 0.35 TCGA-EL-A3T9-01 2 173292654 173292654 C T ITGA6 Silent p.F46F 0.32 TCGA-EL-A3T9-01 2 40342768 40342768 G T SLC8A1 Missense_Mutation p.D849E 0.26 deleterious(0.01) probably_damaging(1) TCGA-EL-A3T9-01 3 196235046 196235046 T C SMCO1 Silent p.R119R 0.25 TCGA-EL-A3T9-01 4 123185435 123185435 C T KIAA1109 Silent p.P2390P 0.30 TCGA-EL-A3T9-01 4 74274412 74274412 A T ALB Missense_Mutation p.E124D 0.26 tolerated(0.55) benign(0.008) TCGA-EL-A3T9-01 5 137727661 137727661 G - KDM3B Frame_Shift_Del p.A781Qfs*14 0.34 TCGA-EL-A3T9-01 5 95735751 95735751 C T PCSK1 Missense_Mutation p.A446T 0.49 deleterious(0.01) probably_damaging(0.957) TCGA-EL-A3T9-01 7 128494189 128494189 G A FLNC Missense_Mutation p.D2216N 0.44 deleterious(0.01) benign(0) TCGA-EL-A3T9-01 7 4830986 4830986 G T AP5Z1 Silent p.V798V 0.37 TCGA-EL-A3T9-01 8 145730778 145730778 G A GPT Silent p.A215A 0.06 TCGA-EL-A3T9-01 9 35102741 35102741 G A STOML2 Missense_Mutation p.P42L 0.31 deleterious(0) probably_damaging(1) TCGA-EL-A3T9-01 X 68060182 68060182 G A EFNB1 Silent p.A242A 0.19 TCGA-EL-A3TA-01 17 6367996 6367996 C T PITPNM3 Missense_Mutation p.M662I 0.24 deleterious(0.01) benign(0.186) TCGA-EL-A3TA-01 19 58596319 58596319 G A ZSCAN18 Silent p.F478F 0.27 TCGA-EL-A3TA-01 21 44437073 44437073 C A PKNOX1 Missense_Mutation p.A193E 0.05 tolerated(0.1) possibly_damaging(0.78) TCGA-EL-A3TA-01 6 24357867 24357867 C T DCDC2 Missense_Mutation p.E38K 0.17 deleterious(0) probably_damaging(0.962) TCGA-EL-A3TA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.23 deleterious(0) probably_damaging(0.967) TCGA-EL-A3TA-01 X 78216608 78216608 G T P2RY10 Silent p.G197G 0.06 TCGA-EL-A3TB-01 11 104879560 104879560 G A CASP5 Missense_Mutation p.T65M 0.08 tolerated_low_confidence(0.26) benign(0.32) TCGA-EL-A3TB-01 11 125359608 125359608 G A FEZ1 Silent p.D22D 0.37 TCGA-EL-A3TB-01 11 33087532 33087532 A G TCP11L1 Missense_Mutation p.I377V 0.23 tolerated(1) benign(0.006) TCGA-EL-A3TB-01 14 50131361 50131366 CATGCC - POLE2 In_Frame_Del p.E220_C222delinsD 0.14 TCGA-EL-A3TB-01 15 85345382 85345382 G A ZNF592 Missense_Mutation p.E1188K 0.32 tolerated(0.64) benign(0.025) TCGA-EL-A3TB-01 16 28925726 28925726 C A RABEP2 Missense_Mutation p.G242V 0.14 deleterious(0.03) benign(0.402) TCGA-EL-A3TB-01 18 50734133 50734133 C T DCC Missense_Mutation p.R603C 0.33 deleterious(0) probably_damaging(0.984) TCGA-EL-A3TB-01 19 687034 687034 T C PRSS57 Missense_Mutation p.K179R 0.23 tolerated(0.15) benign(0.124) TCGA-EL-A3TB-01 1 101198093 101198093 C A VCAM1 Missense_Mutation p.Q549K 0.45 tolerated(0.6) benign(0.02) TCGA-EL-A3TB-01 1 110882663 110882663 C G RBM15 Missense_Mutation p.S212R 0.45 deleterious(0.05) benign(0.265) TCGA-EL-A3TB-01 2 179399157 179399157 A G TTN Missense_Mutation p.M34062T 0.38 TCGA-EL-A3TB-01 2 27861816 27861816 C A GPN1 Missense_Mutation p.A226D 0.07 deleterious(0) probably_damaging(0.987) TCGA-EL-A3TB-01 3 48789079 48789079 T C PRKAR2A Missense_Mutation p.Y385C 0.34 deleterious(0) probably_damaging(0.999) TCGA-EL-A3TB-01 3 97202876 97202876 A T EPHA6 Missense_Mutation p.I725F 0.39 deleterious(0) probably_damaging(0.998) TCGA-EL-A3TB-01 5 167891808 167891808 G A WWC1 Silent p.A1003A 0.34 TCGA-EL-A3TB-01 5 76128981 76128981 C T F2RL1 Silent p.H183H 0.05 TCGA-EL-A3TB-01 6 34059809 34059809 G A GRM4 Missense_Mutation p.S196F 0.23 deleterious(0) probably_damaging(0.966) TCGA-EL-A3TB-01 7 100685167 100685167 C T MUC17 Silent p.T3490T 0.41 TCGA-EL-A3TB-01 9 130658585 130658585 C T ST6GALNAC6 Missense_Mutation p.G18E 0.37 possibly_damaging(0.49) TCGA-EL-A3ZG-01 12 39688220 39688220 T C KIF21A 3'Flank 0.27 TCGA-EL-A3ZG-01 1 42896266 42896266 T C ZMYND12 3'UTR 0.19 TCGA-EL-A3ZG-01 21 26957993 26957993 A C MRPL39 3'UTR 0.48 TCGA-EL-A3ZG-01 3 197680998 197680998 A G RPL35A Missense_Mutation p.I97V 0.08 deleterious(0.04) benign(0.202) TCGA-EL-A3ZG-01 6 36569869 36569869 T C SRSF3 3'UTR 0.44 TCGA-EL-A3ZG-01 6 83963383 83963383 C T ME1 Missense_Mutation p.R260Q 0.09 tolerated(0.15) benign(0.088) TCGA-EL-A3ZG-01 7 104844169 104844169 C T SRPK2 Silent p.P45P 0.06 TCGA-EL-A3ZG-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EL-A3ZH-01 11 118362606 118362606 A C KMT2A Missense_Mutation p.N1656T 0.09 probably_damaging(0.991) TCGA-EL-A3ZH-01 11 60885869 60885869 T C CD5 Missense_Mutation p.I106T 0.06 tolerated(0.45) benign(0.059) TCGA-EL-A3ZH-01 12 3788151 3788151 T C EFCAB4B Missense_Mutation p.M152V 0.38 tolerated(0.35) benign(0.001) TCGA-EL-A3ZH-01 16 28846948 28846948 A C ATXN2L Missense_Mutation p.T922P 0.29 deleterious(0) possibly_damaging(0.836) TCGA-EL-A3ZH-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.47 tolerated(0.06) benign(0.006) TCGA-EL-A3ZH-01 1 16388993 16388993 C T FAM131C Splice_Site p.X58_splice 0.44 TCGA-EL-A3ZH-01 20 33501967 33501967 C T ACSS2 Nonsense_Mutation p.Q238* 0.08 TCGA-EL-A3ZH-01 22 20909296 20909296 G C MED15 Silent p.R104R 0.08 TCGA-EL-A3ZH-01 7 128445518 128445518 G T CCDC136 Missense_Mutation p.M296I 0.37 tolerated(0.29) benign(0.094) TCGA-EL-A3ZH-01 9 32541435 32541435 G A TOPORS Missense_Mutation p.R1030W 0.06 deleterious_low_confidence(0) unknown(0) TCGA-EL-A3ZH-01 X 154305462 154305462 T A BRCC3 Silent p.I71I 0.42 TCGA-EL-A3ZK-01 11 130289047 130289047 C A ADAMTS8 Silent p.G287G 0.29 TCGA-EL-A3ZK-01 12 32480404 32480404 G A BICD1 Missense_Mutation p.E339K 0.26 deleterious(0) probably_damaging(0.999) TCGA-EL-A3ZK-01 14 19553709 19553709 T G POTEG Missense_Mutation p.M98R 0.10 deleterious_low_confidence(0.04) benign(0.397) TCGA-EL-A3ZK-01 19 39898883 39898883 G A ZFP36 Silent p.P181P 0.33 TCGA-EL-A3ZK-01 19 55594786 55594786 G A EPS8L1 Missense_Mutation p.E419K 0.14 tolerated(0.96) benign(0.003) TCGA-EL-A3ZK-01 19 5749174 5749174 G A CATSPERD Missense_Mutation p.V323M 0.37 tolerated(0.14) benign(0.341) TCGA-EL-A3ZK-01 2 105924122 105924122 C T TGFBRAP1 Missense_Mutation p.V213I 0.06 tolerated(0.21) benign(0.376) TCGA-EL-A3ZK-01 2 96781258 96781258 C A ADRA2B Missense_Mutation p.G211W 0.32 deleterious(0) benign(0.012) TCGA-EL-A3ZK-01 5 140563687 140563687 C T PCDHB16 Missense_Mutation p.S518L 0.07 deleterious_low_confidence(0) benign(0.311) TCGA-EL-A3ZK-01 7 108213643 108213643 T C DNAJB9 Missense_Mutation p.M173T 0.36 tolerated(0.08) benign(0.4) TCGA-EL-A3ZK-01 7 122342453 122342453 C T RNF148 Missense_Mutation p.V118M 0.10 deleterious(0.01) benign(0.025) TCGA-EL-A3ZK-01 X 114883933 114883933 T G PLS3 3'UTR 0.19 TCGA-EL-A3ZK-01 X 129507053 129507053 G T SLC25A14 3'UTR 0.09 TCGA-EL-A3ZK-01 X 138869347 138869347 C G ATP11C Missense_Mutation p.R529T 0.26 tolerated(0.43) benign(0.014) TCGA-EL-A3ZK-01 X 18807364 18807364 A G PPEF1 Silent p.E346E 0.05 TCGA-EL-A3ZL-01 11 66638546 66638546 T C PC Missense_Mutation p.M204V 0.38 deleterious(0) possibly_damaging(0.872) TCGA-EL-A3ZL-01 12 124403405 124403405 G A DNAH10 Silent p.L3687L 0.58 TCGA-EL-A3ZL-01 17 76046475 76046475 G A TNRC6C Silent p.L444L 0.37 TCGA-EL-A3ZL-01 19 10561524 10561524 G A PDE4A Silent p.L230L 0.31 TCGA-EL-A3ZL-01 19 50779287 50779287 A G MYH14 Silent p.K1169K 0.44 TCGA-EL-A3ZL-01 1 173456996 173456996 G T PRDX6 Missense_Mutation p.Q223H 0.52 tolerated(0.06) benign(0.006) TCGA-EL-A3ZL-01 2 74327671 74327671 C A TET3 Nonsense_Mutation p.Y1117* 0.19 TCGA-EL-A3ZL-01 5 137681091 137681091 C T FAM53C Silent p.G238G 0.04 TCGA-EL-A3ZL-01 5 158749491 158749491 G A IL12B Silent p.C131C 0.38 TCGA-EL-A3ZL-01 5 41012777 41012777 C T MROH2B Missense_Mutation p.G1015S 0.40 tolerated(0.26) benign(0.191) TCGA-EL-A3ZL-01 6 121768964 121768964 G A GJA1 Missense_Mutation p.G324E 0.43 tolerated(0.11) possibly_damaging(0.774) TCGA-EL-A3ZL-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-EL-A3ZL-01 7 45928328 45928328 C T IGFBP1 Missense_Mutation p.A26V 0.41 tolerated(0.11) benign(0.197) TCGA-EL-A3ZL-01 8 118817130 118817130 T A EXT1 Missense_Mutation p.Y629F 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-EL-A3ZL-01 8 121160080 121160080 A T COL14A1 5'UTR 0.35 TCGA-EL-A3ZL-01 8 121457695 121457695 G C MTBP 5'UTR 0.39 TCGA-EL-A3ZL-01 X 151124198 151124198 G C GABRE Missense_Mutation p.P307A 0.03 tolerated(0.16) probably_damaging(0.996) TCGA-EL-A3ZN-01 11 100922214 100922214 T C PGR Silent p.R766R 0.34 TCGA-EL-A3ZN-01 19 18368857 18368857 G A KIAA1683 Silent p.A1079A 0.28 TCGA-EL-A3ZN-01 20 32161875 32161875 A G CBFA2T2 5'UTR 0.17 TCGA-EL-A3ZN-01 20 32161876 32161876 A T CBFA2T2 5'UTR 0.12 TCGA-EL-A3ZN-01 22 31531664 31531664 C G PLA2G3 3'UTR 0.32 TCGA-EL-A3ZN-01 7 63727074 63727074 A G ZNF679 Missense_Mutation p.K355E 0.12 tolerated(1) benign(0.001) TCGA-EL-A3ZO-01 10 116021037 116021037 C G VWA2 Missense_Mutation p.I118M 0.12 tolerated(0.19) benign(0.145) TCGA-EL-A3ZO-01 10 47087440 47087440 C G NPY4R Silent p.L219L 0.05 TCGA-EL-A3ZO-01 10 50285331 50285331 G T VSTM4 Silent p.I189I 0.10 TCGA-EL-A3ZO-01 10 70405889 70405889 C T TET1 Missense_Mutation p.H1135Y 0.12 tolerated(0.94) benign(0.003) TCGA-EL-A3ZO-01 10 74034832 74034832 C T DDIT4 Silent p.S195S 0.09 TCGA-EL-A3ZO-01 11 64369049 64369049 G A SLC22A12 3'UTR 0.25 TCGA-EL-A3ZO-01 11 72945159 72945159 C G P2RY2 5'UTR 0.14 TCGA-EL-A3ZO-01 11 73021165 73021165 C T ARHGEF17 Silent p.S494S 0.15 TCGA-EL-A3ZO-01 11 85375852 85375852 G C CREBZF Missense_Mutation p.P23R 0.39 tolerated_low_confidence(0.24) benign(0.003) TCGA-EL-A3ZO-01 11 93463692 93463692 C G KIAA1731 3'Flank 0.19 TCGA-EL-A3ZO-01 12 105591668 105591668 G A APPL2 Silent p.L315L 0.11 TCGA-EL-A3ZO-01 12 121958892 121958892 C G KDM2B Missense_Mutation p.A315P 0.10 deleterious(0.05) probably_damaging(0.929) TCGA-EL-A3ZO-01 13 32711005 32711005 C G FRY Intron 0.38 TCGA-EL-A3ZO-01 14 74757084 74757084 C T ABCD4 Missense_Mutation p.E413K 0.13 tolerated(0.4) benign(0.007) TCGA-EL-A3ZO-01 14 95677084 95677084 T C CLMN Silent p.L247L 0.36 TCGA-EL-A3ZO-01 15 44864971 44864971 G A SPG11 Nonsense_Mutation p.Q2085* 0.11 TCGA-EL-A3ZO-01 15 58253454 58253454 C T ALDH1A2 Silent p.T430T 0.16 TCGA-EL-A3ZO-01 15 76995317 76995317 C T SCAPER Missense_Mutation p.M758I 0.30 tolerated(0.13) benign(0.182) TCGA-EL-A3ZO-01 16 3076528 3076528 C T THOC6 Silent p.L141L 0.11 TCGA-EL-A3ZO-01 16 3640002 3640002 C G SLX4 Missense_Mutation p.V1213L 0.14 tolerated(0.29) benign(0.009) TCGA-EL-A3ZO-01 16 3647621 3647621 C T SLX4 Missense_Mutation p.R481Q 0.17 tolerated(0.21) probably_damaging(0.999) TCGA-EL-A3ZO-01 16 50354303 50354303 C T BRD7 Splice_Site p.X539_splice 0.12 TCGA-EL-A3ZO-01 16 58621113 58621113 C G CNOT1 Missense_Mutation p.R142T 0.13 tolerated(0.26) benign(0.118) TCGA-EL-A3ZO-01 16 69727140 69727140 C T NFAT5 Nonsense_Mutation p.Q1138* 0.04 TCGA-EL-A3ZO-01 16 74336136 74336136 G A PSMD7 Silent p.P128P 0.11 TCGA-EL-A3ZO-01 16 84911073 84911073 G A CRISPLD2 Missense_Mutation p.A396T 0.05 tolerated(0.08) probably_damaging(0.938) TCGA-EL-A3ZO-01 16 9858772 9858772 C T GRIN2A Missense_Mutation p.E877K 0.29 deleterious(0.04) possibly_damaging(0.856) TCGA-EL-A3ZO-01 17 19575031 19575031 C G ALDH3A2 Intron 0.13 TCGA-EL-A3ZO-01 17 29203482 29203482 C G ATAD5 Missense_Mutation p.P1233R 0.34 deleterious(0) possibly_damaging(0.786) TCGA-EL-A3ZO-01 17 38907519 38907519 G A KRT25 Silent p.A243A 0.28 TCGA-EL-A3ZO-01 17 40321507 40321507 G A KCNH4 Silent p.I526I 0.35 TCGA-EL-A3ZO-01 17 57288927 57288927 C T SMG8 Silent p.P505P 0.14 TCGA-EL-A3ZO-01 17 70120552 70120552 G A SOX9 3'UTR 0.39 TCGA-EL-A3ZO-01 17 74057636 74057636 G A SRP68 Missense_Mutation p.S194L 0.12 tolerated(0.3) benign(0.003) TCGA-EL-A3ZO-01 17 8381712 8381712 C A MYH10 Nonsense_Mutation p.E1884* 0.11 TCGA-EL-A3ZO-01 19 10439465 10439465 G C RAVER1 Silent p.L220L 0.10 TCGA-EL-A3ZO-01 19 38713285 38713285 G A DPF1 Silent p.C58C 0.24 TCGA-EL-A3ZO-01 19 38853443 38853443 C A CATSPERG Missense_Mutation p.L816M 0.30 deleterious(0.02) possibly_damaging(0.82) TCGA-EL-A3ZO-01 19 38983246 38983246 G A RYR1 Missense_Mutation p.E2082K 0.16 benign(0.044) TCGA-EL-A3ZO-01 19 40739459 40739459 G A AKT2 3'UTR 0.28 TCGA-EL-A3ZO-01 19 41081411 41081411 C G SPTBN4 Missense_Mutation p.S2544C 0.12 deleterious(0) possibly_damaging(0.7) TCGA-EL-A3ZO-01 19 41081514 41081514 C G SPTBN4 3'UTR 0.14 TCGA-EL-A3ZO-01 19 43098036 43098036 G A CEACAM8 Silent p.F27F 0.12 TCGA-EL-A3ZO-01 19 43772209 43772209 G A PSG9 Silent p.L53L 0.28 TCGA-EL-A3ZO-01 19 48981323 48981323 C T CYTH2 Intron 0.16 TCGA-EL-A3ZO-01 19 49935868 49935868 A G SLC17A7 Missense_Mutation p.I353T 0.27 tolerated(0.07) possibly_damaging(0.515) TCGA-EL-A3ZO-01 19 8381393 8381393 T G NDUFA7 Missense_Mutation p.K80Q 0.07 tolerated(0.27) benign(0.228) TCGA-EL-A3ZO-01 1 145537478 145537478 C G ITGA10 Missense_Mutation p.L830V 0.08 deleterious(0.01) probably_damaging(0.955) TCGA-EL-A3ZO-01 1 155110531 155110531 C G SLC50A1 Missense_Mutation p.S174C 0.07 tolerated(0.08) benign(0.208) TCGA-EL-A3ZO-01 1 155931629 155931629 C T ARHGEF2 Missense_Mutation p.E431K 0.05 tolerated(0.17) benign(0.027) TCGA-EL-A3ZO-01 1 156905770 156905770 G C ARHGEF11 3'UTR 0.51 TCGA-EL-A3ZO-01 1 158592868 158592868 G A SPTA1 Missense_Mutation p.R2009C 0.25 deleterious(0) probably_damaging(0.976) TCGA-EL-A3ZO-01 1 201843979 201843979 G C IPO9 Missense_Mutation p.W951C 0.09 tolerated(0.18) benign(0.01) TCGA-EL-A3ZO-01 1 235887339 235887339 C G LYST Missense_Mutation p.D3102H 0.06 deleterious(0) probably_damaging(0.998) TCGA-EL-A3ZO-01 1 26448486 26448486 G C PDIK1L Silent p.L148L 0.12 TCGA-EL-A3ZO-01 1 27333107 27333107 G C FAM46B Silent p.L202L 0.12 TCGA-EL-A3ZO-01 1 32800179 32800179 C G MARCKSL1 3'UTR 0.24 TCGA-EL-A3ZO-01 1 45793409 45793409 C G HPDL Missense_Mutation p.P197A 0.10 tolerated(0.28) probably_damaging(0.999) TCGA-EL-A3ZO-01 1 5923268 5923268 G A NPHP4 3'UTR 0.31 TCGA-EL-A3ZO-01 1 91985807 91985807 G C CDC7 Missense_Mutation p.R434T 0.10 deleterious(0.01) possibly_damaging(0.898) TCGA-EL-A3ZO-01 20 36012660 36012660 C T SRC Missense_Mutation p.S35L 0.19 tolerated(0.12) benign(0.154) TCGA-EL-A3ZO-01 21 15746494 15746494 C G HSPA13 Missense_Mutation p.R287T 0.10 tolerated(0.08) probably_damaging(0.998) TCGA-EL-A3ZO-01 21 30339475 30339475 G C LTN1 Silent p.L492L 0.11 TCGA-EL-A3ZO-01 2 100079058 100079058 C G REV1 Missense_Mutation p.Q27H 0.07 deleterious(0.02) possibly_damaging(0.62) TCGA-EL-A3ZO-01 2 105984158 105984158 C T FHL2 Missense_Mutation p.E124K 0.18 deleterious(0) probably_damaging(0.999) TCGA-EL-A3ZO-01 2 160738665 160738665 C T LY75-CD302 Missense_Mutation p.E406K 0.19 deleterious(0) probably_damaging(0.953) TCGA-EL-A3ZO-01 2 242396303 242396303 G A FARP2 Missense_Mutation p.G518E 0.12 tolerated(0.65) benign(0.174) TCGA-EL-A3ZO-01 2 7036091 7036091 G C RSAD2 3'UTR 0.10 TCGA-EL-A3ZO-01 2 85529723 85529723 G C TCF7L1 Missense_Mutation p.E214D 0.06 tolerated(1) benign(0.137) TCGA-EL-A3ZO-01 3 121230820 121230820 G A POLQ Nonsense_Mutation p.Q509* 0.15 TCGA-EL-A3ZO-01 3 150262135 150262135 T C SERP1 3'UTR 0.14 TCGA-EL-A3ZO-01 3 160285957 160285957 C G KPNA4 5'Flank 0.18 TCGA-EL-A3ZO-01 3 169694764 169694764 C T SEC62 Missense_Mutation p.S59L 0.29 deleterious(0) possibly_damaging(0.713) TCGA-EL-A3ZO-01 3 183818138 183818138 G A HTR3E 5'Flank 0.16 TCGA-EL-A3ZO-01 3 33626316 33626316 G T CLASP2 Nonsense_Mutation p.S723* 0.12 TCGA-EL-A3ZO-01 3 49050828 49050828 A G WDR6 Missense_Mutation p.I651V 0.32 tolerated(0.62) benign(0.002) TCGA-EL-A3ZO-01 3 49313987 49313987 G C C3orf62 Missense_Mutation p.L107V 0.32 tolerated(0.29) benign(0.021) TCGA-EL-A3ZO-01 4 166000862 166000862 C T TMEM192 Missense_Mutation p.R255Q 0.16 tolerated(0.06) possibly_damaging(0.493) TCGA-EL-A3ZO-01 4 48523067 48523067 C T FRYL Missense_Mutation p.E2563K 0.11 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-EL-A3ZO-01 5 140516600 140516600 C T PCDHB5 Silent p.F528F 0.22 TCGA-EL-A3ZO-01 5 140718777 140718777 G A PCDHGA2 Missense_Mutation p.R80Q 0.13 tolerated_low_confidence(0.06) benign(0.229) TCGA-EL-A3ZO-01 5 145665507 145665507 C T RBM27 Intron 0.10 TCGA-EL-A3ZO-01 5 40947793 40947793 C T C7 Silent p.F276F 0.05 TCGA-EL-A3ZO-01 5 67593325 67593325 C G PIK3R1 Missense_Mutation p.L691V 0.13 tolerated(0.05) probably_damaging(0.996) TCGA-EL-A3ZO-01 5 72427547 72427547 C T TMEM171 Missense_Mutation p.S322F 0.14 tolerated_low_confidence(0.09) benign(0.001) TCGA-EL-A3ZO-01 5 98232910 98232910 G A CHD1 Missense_Mutation p.H494Y 0.37 deleterious(0.03) possibly_damaging(0.527) TCGA-EL-A3ZO-01 6 149395088 149395088 G C UST Missense_Mutation p.E353Q 0.38 tolerated(0.19) benign(0.078) TCGA-EL-A3ZO-01 6 26056240 26056240 C T HIST1H1C Silent p.K139K 0.12 TCGA-EL-A3ZO-01 6 28213044 28213044 G A ZKSCAN4 Silent p.F496F 0.15 TCGA-EL-A3ZO-01 6 33052895 33052895 G C HLA-DPB1 Missense_Mutation p.G178A 0.13 deleterious(0) probably_damaging(1) TCGA-EL-A3ZO-01 6 35782404 35782404 C T LHFPL5 Missense_Mutation p.T165M 0.32 deleterious(0) probably_damaging(1) TCGA-EL-A3ZO-01 6 63990030 63990030 G C LGSN Missense_Mutation p.L476V 0.12 deleterious(0) probably_damaging(0.977) TCGA-EL-A3ZO-01 6 90276782 90276782 C G ANKRD6 Silent p.L29L 0.36 TCGA-EL-A3ZO-01 7 121002954 121002955 - T FAM3C Frame_Shift_Ins p.G127Rfs*8 0.11 TCGA-EL-A3ZO-01 7 121680999 121680999 C T PTPRZ1 Missense_Mutation p.R1923C 0.12 tolerated(0.08) probably_damaging(0.935) TCGA-EL-A3ZO-01 7 121698953 121698953 G C PTPRZ1 Missense_Mutation p.E2210Q 0.11 deleterious(0.04) benign(0.019) TCGA-EL-A3ZO-01 7 123332450 123332450 C G WASL Missense_Mutation p.G433A 0.14 deleterious(0.02) probably_damaging(1) TCGA-EL-A3ZO-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-EL-A3ZO-01 7 30538517 30538517 C G GGCT Missense_Mutation p.E109Q 0.13 tolerated(0.09) benign(0.436) TCGA-EL-A3ZO-01 7 44302632 44302632 G T CAMK2B Silent p.I64I 0.11 TCGA-EL-A3ZO-01 7 99170671 99170671 C T ZNF655 Missense_Mutation p.R349C 0.06 deleterious(0.01) possibly_damaging(0.835) TCGA-EL-A3ZO-01 8 10466364 10466364 C G RP1L1 Silent p.G1748G 0.13 TCGA-EL-A3ZO-01 8 116616440 116616440 T A TRPS1 Missense_Mutation p.S586C 0.07 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-EL-A3ZO-01 8 124373884 124373884 C T ATAD2 Missense_Mutation p.R351Q 0.20 tolerated(0.11) benign(0.195) TCGA-EL-A3ZO-01 8 125022933 125022933 G A FER1L6 Silent p.L600L 0.23 TCGA-EL-A3ZO-01 8 133900464 133900464 G A TG Silent p.V804V 0.13 TCGA-EL-A3ZO-01 8 13947905 13947905 C T SGCZ 3'UTR 0.26 TCGA-EL-A3ZO-01 8 145060266 145060266 C G PARP10 Missense_Mutation p.Q46H 0.15 deleterious(0.05) possibly_damaging(0.861) TCGA-EL-A3ZO-01 8 99440359 99440359 C G KCNS2 Missense_Mutation p.S51W 0.11 deleterious(0) probably_damaging(0.999) TCGA-EL-A3ZO-01 9 112189342 112189342 A G PTPN3 Silent p.L297L 0.15 TCGA-EL-A3ZO-01 9 21186936 21186936 G T IFNA4 3'UTR 0.08 TCGA-EL-A3ZO-01 X 119005506 119005506 C T RNF113A Missense_Mutation p.R24Q 0.07 tolerated(0.12) benign(0.004) TCGA-EL-A3ZO-01 X 128913981 128913981 G A SASH3 5'UTR 0.29 TCGA-EL-A3ZO-01 X 132161783 132161783 G A USP26 Nonsense_Mutation p.Q156* 0.26 TCGA-EL-A3ZO-01 X 18918785 18918785 C T PHKA2 Intron 0.20 TCGA-EL-A3ZO-01 X 31792217 31792217 C A DMD Nonsense_Mutation p.E2468* 0.09 TCGA-EL-A3ZP-01 11 58190069 58190069 G A OR5B2 Silent p.T222T 0.07 TCGA-EL-A3ZP-01 17 74562272 74562272 A G ST6GALNAC2 Missense_Mutation p.F347L 0.38 probably_damaging(0.991) TCGA-EL-A3ZP-01 1 223986347 223986347 A C TP53BP2 Silent p.P506P 0.38 TCGA-EL-A3ZP-01 1 29519625 29519625 G T MECR 3'Flank 0.11 TCGA-EL-A3ZP-01 4 23833371 23833371 T C PPARGC1A Missense_Mutation p.I80V 0.41 deleterious(0) possibly_damaging(0.472) TCGA-EL-A3ZP-01 5 171773196 171773196 C T SH3PXD2B Missense_Mutation p.E378K 0.37 deleterious(0.01) possibly_damaging(0.531) TCGA-EL-A3ZP-01 9 4684993 4684993 G A CDC37L1 Silent p.L83L 0.05 TCGA-EL-A3ZQ-01 10 459978 459978 C G DIP2C Missense_Mutation p.G311A 0.25 tolerated(0.42) benign(0.038) TCGA-EL-A3ZQ-01 10 69556970 69556970 T C DNAJC12 Splice_Site p.X168_splice 0.45 TCGA-EL-A3ZQ-01 11 49208318 49208318 C T FOLH1 Missense_Mutation p.D173N 0.30 deleterious(0.04) benign(0.099) TCGA-EL-A3ZQ-01 12 81503376 81503376 G A ACSS3 Missense_Mutation p.V117I 0.10 tolerated(0.31) benign(0.006) TCGA-EL-A3ZQ-01 13 96705526 96705526 A T UGGT2 Missense_Mutation p.L14Q 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-EL-A3ZQ-01 17 18077153 18077153 C T MYO15A Missense_Mutation p.T3470M 0.07 unknown(0) TCGA-EL-A3ZQ-01 17 18219366 18219366 A G SMCR8 Missense_Mutation p.N88S 0.38 deleterious(0) probably_damaging(0.999) TCGA-EL-A3ZQ-01 17 72916218 72916218 C T USH1G Missense_Mutation p.R238H 0.06 deleterious(0) probably_damaging(0.997) TCGA-EL-A3ZQ-01 1 107867092 107867092 A C NTNG1 Silent p.T145T 0.35 TCGA-EL-A3ZQ-01 20 36718386 36718386 C T RPRD1B 3'UTR 0.33 TCGA-EL-A3ZQ-01 21 11020836 11020836 G A BAGE2 3'Flank 0.12 TCGA-EL-A3ZQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EL-A3ZQ-01 8 133895206 133895207 - G TG Frame_Shift_Ins p.H347Afs*14 0.38 TCGA-EL-A3ZR-01 11 1271213 1271213 C A MUC5B Missense_Mutation p.T4368K 0.59 benign(0.076) TCGA-EL-A3ZR-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.53 tolerated(0.07) benign(0.069) TCGA-EL-A3ZR-01 11 58126180 58126180 G A OR5B17 Silent p.Y121Y 0.20 TCGA-EL-A3ZR-01 11 64028911 64028911 T G PLCB3 Missense_Mutation p.S591A 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-EL-A3ZR-01 12 123746190 123746190 T C CDK2AP1 3'UTR 0.14 TCGA-EL-A3ZR-01 13 37399626 37399626 C A RFXAP Missense_Mutation p.P221H 0.35 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EL-A3ZR-01 13 41768119 41768119 G A KBTBD7 Missense_Mutation p.A92V 0.14 tolerated(0.34) probably_damaging(0.943) TCGA-EL-A3ZR-01 13 41768120 41768120 C G KBTBD7 Missense_Mutation p.A92P 0.14 deleterious(0.03) probably_damaging(0.984) TCGA-EL-A3ZR-01 14 23345001 23345001 C T LRP10 Nonsense_Mutation p.Q282* 0.31 TCGA-EL-A3ZR-01 16 56659724 56659724 C T MT1E 5'UTR 0.04 TCGA-EL-A3ZR-01 19 56373475 56373475 G A NLRP4 Silent p.R712R 0.05 TCGA-EL-A3ZR-01 1 46663383 46663383 T C POMGNT1 Silent p.R37R 0.29 TCGA-EL-A3ZR-01 22 23401754 23401754 C T RTDR1 Silent p.T311T 0.21 TCGA-EL-A3ZR-01 2 149528907 149528907 T G EPC2 Silent p.V557V 0.22 TCGA-EL-A3ZR-01 2 18736681 18736681 A T RDH14 Missense_Mutation p.L263M 0.26 deleterious(0.04) possibly_damaging(0.809) TCGA-EL-A3ZR-01 3 183903866 183903866 C T ABCF3 5'UTR 0.50 TCGA-EL-A3ZR-01 8 8998675 8998675 T G PPP1R3B Silent p.R163R 0.48 TCGA-EL-A3ZR-01 9 136131223 136131223 C T RP11-430N14.4 5'Flank 0.19 TCGA-EL-A3ZR-01 9 16436472 16436472 T C BNC2 Missense_Mutation p.R574G 0.33 deleterious(0) probably_damaging(0.973) TCGA-EL-A3ZR-01 X 19389610 19389610 C T MAP3K15 Silent p.K1049K 0.39 TCGA-EL-A3ZR-01 X 91090988 91090988 C T PCDH11X Missense_Mutation p.A162V 0.08 tolerated(0.27) benign(0.086) TCGA-EL-A3ZS-01 12 49730112 49730112 G T C1QL4 Missense_Mutation p.P50H 0.36 deleterious(0.03) benign(0.436) TCGA-EL-A3ZS-01 12 7045127 7045127 A G ATN1 Missense_Mutation p.M233V 0.24 benign(0) TCGA-EL-A3ZS-01 2 179428462 179428462 G T TTN Missense_Mutation p.P27466H 0.07 TCGA-EL-A3ZS-01 2 179444992 179444992 T - TTN Intron 0.24 TCGA-EL-A3ZS-01 2 179449515 179449515 G A TTN Missense_Mutation p.S21618F 0.05 TCGA-EL-A3ZS-01 8 25296836 25296836 C G KCTD9 Missense_Mutation p.R153P 0.13 deleterious(0) probably_damaging(0.959) TCGA-EL-A3ZT-01 11 27528435 27528435 C T LIN7C 5'Flank 0.33 TCGA-EL-A3ZT-01 12 101777048 101777048 T G UTP20 Missense_Mutation p.I2629S 0.08 tolerated(0.06) benign(0.028) TCGA-EL-A3ZT-01 12 116413488 116413488 T C MED13L Missense_Mutation p.D1807G 0.10 deleterious(0) possibly_damaging(0.82) TCGA-EL-A3ZT-01 15 90764978 90764978 G A SEMA4B Missense_Mutation p.R281H 0.09 deleterious(0) probably_damaging(0.968) TCGA-EL-A3ZT-01 16 56906569 56906569 G A SLC12A3 Silent p.A322A 0.33 TCGA-EL-A3ZT-01 16 601310 601310 T C CAPN15 Missense_Mutation p.M692T 0.34 deleterious(0) probably_damaging(0.999) TCGA-EL-A3ZT-01 19 36004432 36004432 C T DMKN 5'UTR 0.15 TCGA-EL-A3ZT-01 19 47572495 47572495 C A ZC3H4 Missense_Mutation p.R751L 0.41 unknown(0) TCGA-EL-A3ZT-01 1 155300201 155300201 C T RUSC1 Missense_Mutation p.R850W 0.07 deleterious(0) probably_damaging(0.997) TCGA-EL-A3ZT-01 1 228210473 228210473 C T WNT3A Silent p.Y59Y 0.31 TCGA-EL-A3ZT-01 2 120677714 120677714 G C PTPN4 Missense_Mutation p.A300P 0.44 deleterious(0) possibly_damaging(0.616) TCGA-EL-A3ZT-01 2 120677715 120677715 C A PTPN4 Missense_Mutation p.A300E 0.43 deleterious(0) benign(0.267) TCGA-EL-A3ZT-01 5 14492733 14492733 G A TRIO Missense_Mutation p.A2564T 0.29 benign(0.042) TCGA-EL-A3ZT-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EL-A3ZT-01 X 48896807 48896807 A C TFE3 Missense_Mutation p.L120R 0.80 deleterious(0) unknown(0) TCGA-EL-A4JV-01 10 123843832 123843832 G A TACC2 Missense_Mutation p.R606H 0.06 benign(0.161) TCGA-EL-A4JV-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.37 tolerated(0.07) benign(0.069) TCGA-EL-A4JV-01 11 981217 981217 C T AP2A2 Missense_Mutation p.T208I 0.33 deleterious(0.04) benign(0.004) TCGA-EL-A4JV-01 14 89061103 89061103 T G ZC3H14 Intron 0.07 TCGA-EL-A4JV-01 17 10216500 10216500 G A MYH13 Missense_Mutation p.R1386C 0.37 deleterious(0.01) benign(0.003) TCGA-EL-A4JV-01 18 77894961 77894961 T C ADNP2 Silent p.P555P 0.05 TCGA-EL-A4JV-01 19 55146590 55146590 G A LILRB1 Missense_Mutation p.A508T 0.57 tolerated(0.19) benign(0.281) TCGA-EL-A4JV-01 19 55741844 55741844 G A PPP6R1 3'UTR 0.10 TCGA-EL-A4JV-01 1 11562110 11562110 A G PTCHD2 Missense_Mutation p.Y354C 0.45 deleterious(0) probably_damaging(0.999) TCGA-EL-A4JV-01 1 179609053 179609053 G A TDRD5 Missense_Mutation p.V534I 0.45 tolerated(0.05) probably_damaging(0.973) TCGA-EL-A4JV-01 1 8716118 8716118 G A RERE Missense_Mutation p.P80L 0.06 possibly_damaging(0.814) TCGA-EL-A4JV-01 7 44578575 44578575 G A NPC1L1 Missense_Mutation p.P474L 0.06 deleterious(0) probably_damaging(0.931) TCGA-EL-A4JW-01 11 27528432 27528432 C T LIN7C 5'Flank 0.27 TCGA-EL-A4JW-01 16 58750077 58750077 C A GOT2 Missense_Mutation p.R287L 0.29 deleterious(0) probably_damaging(0.976) TCGA-EL-A4JW-01 19 17973820 17973820 C T RPL18A Missense_Mutation p.A141V 0.39 tolerated(0.55) benign(0.127) TCGA-EL-A4JW-01 19 3281319 3281319 C G CELF5 Missense_Mutation p.S242R 0.15 deleterious(0.01) benign(0) TCGA-EL-A4JW-01 1 171509227 171509227 A G PRRC2C Silent p.Q872Q 0.35 TCGA-EL-A4JW-01 3 128706481 128706481 G A KIAA1257 Silent p.D215D 0.07 TCGA-EL-A4JW-01 3 154138835 154138835 G - GPR149 Frame_Shift_Del p.P539Lfs*37 0.32 TCGA-EL-A4JW-01 3 48638425 48638425 T C UQCRC1 Missense_Mutation p.T317A 0.37 tolerated(0.31) possibly_damaging(0.457) TCGA-EL-A4JW-01 6 170627281 170627281 C T FAM120B Missense_Mutation p.S268L 0.09 deleterious(0) benign(0.061) TCGA-EL-A4JW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-EL-A4JW-01 X 152957468 152957468 C A SLC6A8 Missense_Mutation p.P228Q 0.38 tolerated(0.06) probably_damaging(0.942) TCGA-EL-A4JX-01 11 1956128 1956128 G C TNNT3 Missense_Mutation p.K220N 0.22 deleterious(0.03) possibly_damaging(0.747) TCGA-EL-A4JX-01 17 39725743 39725743 G A KRT9 Missense_Mutation p.R327C 0.18 deleterious(0.02) probably_damaging(1) TCGA-EL-A4JX-01 19 46094655 46094655 T A GPR4 Missense_Mutation p.E157V 0.11 deleterious(0.04) possibly_damaging(0.871) TCGA-EL-A4JX-01 1 25553932 25553935 CTGT A SYF2 Splice_Site p.X155_splice 0.13 TCGA-EL-A4JX-01 2 64323399 64323399 T C PELI1 Missense_Mutation p.T184A 0.07 deleterious(0.04) possibly_damaging(0.573) TCGA-EL-A4JX-01 6 119569448 119569448 A C MAN1A1 Silent p.P323P 0.27 TCGA-EL-A4JX-01 6 168227250 168227250 C T MLLT4 5'Flank 0.22 TCGA-EL-A4JX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.18 deleterious(0) probably_damaging(0.967) TCGA-EL-A4JX-01 8 41470441 41470441 G A AGPAT6 Silent p.E291E 0.25 TCGA-EL-A4JX-01 8 41470442 41470442 C T AGPAT6 Missense_Mutation p.R292C 0.25 deleterious(0.02) probably_damaging(0.972) TCGA-EL-A4JX-01 X 136112376 136112376 G T GPR101 Missense_Mutation p.D486E 0.21 tolerated_low_confidence(0.09) benign(0.018) TCGA-EL-A4JX-01 X 18913268 18913268 C T PHKA2 Silent p.S1108S 0.21 TCGA-EL-A4JZ-01 10 106976772 106976772 G A SORCS3 Missense_Mutation p.E876K 0.28 tolerated(0.07) probably_damaging(0.913) TCGA-EL-A4JZ-01 10 68687364 68687364 C T LRRTM3 Silent p.S230S 0.35 TCGA-EL-A4JZ-01 11 1718519 1718519 G C KRTAP5-6 Missense_Mutation p.G15A 0.28 unknown(0) TCGA-EL-A4JZ-01 17 7592188 7592188 T C WRAP53 Silent p.S74S 0.33 TCGA-EL-A4JZ-01 19 40762959 40762959 C T AKT2 Missense_Mutation p.E17K 0.23 deleterious(0) benign(0.198) TCGA-EL-A4JZ-01 19 58049389 58049389 A G ZNF549 Silent p.K339K 0.31 TCGA-EL-A4JZ-01 1 114454228 114454228 G A DCLRE1B Nonsense_Mutation p.W338* 0.30 TCGA-EL-A4JZ-01 1 218610805 218610805 G C TGFB2 Silent p.P379P 0.11 TCGA-EL-A4JZ-01 20 47256389 47256389 C T PREX1 Silent p.L1273L 0.05 TCGA-EL-A4JZ-01 21 22849723 22849723 A - NCAM2 Frame_Shift_Del p.N670Ifs*35 0.26 TCGA-EL-A4JZ-01 4 119606617 119606617 C T METTL14 5'UTR 0.26 TCGA-EL-A4JZ-01 5 96215823 96215823 A G ERAP2 Missense_Mutation p.H145R 0.30 tolerated(0.07) probably_damaging(0.979) TCGA-EL-A4JZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-EL-A4JZ-01 X 154508527 154508527 C A CLIC2 Nonsense_Mutation p.E165* 0.33 TCGA-EL-A4K0-01 11 118455289 118455289 A G ARCN1 Missense_Mutation p.M250V 0.38 tolerated(0.53) benign(0) TCGA-EL-A4K0-01 12 45269298 45269298 A - NELL2 Intron 0.24 TCGA-EL-A4K0-01 13 94482634 94482634 A C GPC6 Missense_Mutation p.S183R 0.12 deleterious(0.03) benign(0.353) TCGA-EL-A4K0-01 16 31122082 31122082 G T BCKDK Missense_Mutation p.R239I 0.42 deleterious(0.01) possibly_damaging(0.779) TCGA-EL-A4K0-01 18 63430230 63430230 G A CDH7 Nonsense_Mutation p.W51* 0.36 TCGA-EL-A4K0-01 1 152777911 152777911 T A LCE1C Missense_Mutation p.K15M 0.30 deleterious_low_confidence(0.02) unknown(0) TCGA-EL-A4K0-01 1 186052052 186052052 C A HMCN1 Missense_Mutation p.T2948K 0.30 probably_damaging(0.997) TCGA-EL-A4K0-01 2 179534367 179534367 T C TTN Missense_Mutation p.K11808E 0.29 TCGA-EL-A4K0-01 3 196387348 196387348 G C NRROS Silent p.L278L 0.25 TCGA-EL-A4K0-01 3 9482327 9482327 C T SETD5 Missense_Mutation p.T252I 0.26 deleterious(0.01) probably_damaging(0.985) TCGA-EL-A4K0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-EL-A4K0-01 X 48118021 48118021 T A SSX1 Missense_Mutation p.F79I 0.39 tolerated(0.26) benign(0.022) TCGA-EL-A4K1-01 11 8747678 8747678 G A ST5 Silent p.N473N 0.10 TCGA-EL-A4K1-01 1 64676469 64676469 C A UBE2U Missense_Mutation p.P96T 0.06 deleterious(0.04) benign(0.105) TCGA-EL-A4K1-01 3 182841707 182841707 C T LAMP3 3'UTR 0.22 TCGA-EL-A4K1-01 3 46784402 46784402 C T PRSS45 Splice_Site p.X151_splice 0.36 TCGA-EL-A4K1-01 3 53810919 53810919 T A CACNA1D Missense_Mutation p.L1528Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-EL-A4K1-01 5 31529190 31529190 A G DROSHA 5'UTR 0.27 TCGA-EL-A4K1-01 5 78610535 78610535 T G JMY Missense_Mutation p.D840E 0.09 tolerated(0.9) benign(0.085) TCGA-EL-A4K1-01 5 81601214 81601214 G A ATP6AP1L 5'UTR 0.14 TCGA-EL-A4K1-01 6 121544383 121544383 A G TBC1D32 Missense_Mutation p.I827T 0.42 tolerated(0.29) benign(0.007) TCGA-EL-A4K1-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.50 deleterious(0) probably_damaging(0.967) TCGA-EL-A4K1-01 8 145150795 145150795 G A CYC1 Silent p.A63A 0.10 TCGA-EL-A4K1-01 9 136131300 136131300 G C RP11-430N14.4 5'Flank 0.14 TCGA-EL-A4K1-01 X 76875995 76875995 C A ATRX Missense_Mutation p.D1714Y 0.30 probably_damaging(1) TCGA-EL-A4K2-01 12 125397369 125397369 T C UBC Missense_Mutation p.I317V 0.25 deleterious(0.03) possibly_damaging(0.756) TCGA-EL-A4K2-01 12 6964920 6964920 A G USP5 Missense_Mutation p.K80R 0.44 tolerated(0.1) benign(0.003) TCGA-EL-A4K2-01 15 20490512 20490512 C A CHEK2P2 RNA 0.22 TCGA-EL-A4K2-01 15 78305349 78305349 G A TBC1D2B Silent p.L696L 0.13 TCGA-EL-A4K2-01 17 11827171 11827171 C A DNAH9 Missense_Mutation p.H3930Q 0.09 possibly_damaging(0.797) TCGA-EL-A4K2-01 19 18679498 18679498 G A KXD1 3'UTR 0.12 TCGA-EL-A4K2-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.39 tolerated(0.06) benign(0.006) TCGA-EL-A4K2-01 1 6696243 6696243 G C DNAJC11 Missense_Mutation p.Q530E 0.31 tolerated(1) benign(0.003) TCGA-EL-A4K2-01 2 242695085 242695085 G A D2HGDH Intron 0.50 TCGA-EL-A4K2-01 4 122853799 122853799 C T TRPC3 Missense_Mutation p.R205H 0.09 deleterious(0) probably_damaging(0.987) TCGA-EL-A4K2-01 5 58511659 58511659 G A PDE4D Silent p.S197S 0.07 TCGA-EL-A4K2-01 6 43266347 43266347 C T SLC22A7 Missense_Mutation p.A84V 0.07 tolerated(0.07) benign(0.012) TCGA-EL-A4K2-01 6 53986246 53986246 T C MLIP Missense_Mutation p.V22A 0.32 deleterious(0) probably_damaging(0.98) TCGA-EL-A4K2-01 8 103271235 103271235 A - UBR5 Frame_Shift_Del p.F2693Lfs*25 0.17 TCGA-EL-A4K4-01 11 5624780 5624780 C T TRIM6 Missense_Mutation p.R108W 0.19 deleterious(0) possibly_damaging(0.749) TCGA-EL-A4K4-01 12 124827559 124827559 A T NCOR2 Missense_Mutation p.L1643Q 0.12 probably_damaging(0.998) TCGA-EL-A4K4-01 19 15839218 15839218 G A OR10H2 Missense_Mutation p.R122H 0.36 deleterious(0.02) probably_damaging(0.953) TCGA-EL-A4K4-01 19 42463402 42463402 C A RABAC1 Missense_Mutation p.G15W 0.14 deleterious(0) probably_damaging(0.999) TCGA-EL-A4K4-01 20 33057876 33057876 A G ITCH Missense_Mutation p.Y524C 0.31 deleterious(0) benign(0.02) TCGA-EL-A4K4-01 20 39991087 39991087 C T EMILIN3 Silent p.Q374Q 0.12 TCGA-EL-A4K4-01 2 198351789 198351789 A G HSPD1 Missense_Mutation p.M568T 0.14 deleterious_low_confidence(0.04) unknown(0) TCGA-EL-A4K4-01 3 130284243 130284243 G A COL6A6 Missense_Mutation p.R356Q 0.45 tolerated(0.06) probably_damaging(0.999) TCGA-EL-A4K4-01 3 49689975 49689975 C T BSN Missense_Mutation p.P996S 0.36 unknown(0) TCGA-EL-A4K4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-EL-A4K6-01 10 105420865 105420865 G T SH3PXD2A Missense_Mutation p.D160E 0.47 tolerated(0.1) probably_damaging(0.967) TCGA-EL-A4K6-01 10 106059174 106059174 G A GSTO2 3'Flank 0.31 TCGA-EL-A4K6-01 11 5172912 5172912 G A OR52A1 Missense_Mutation p.R230C 0.05 deleterious(0.03) benign(0.052) TCGA-EL-A4K6-01 11 70333190 70333190 C T SHANK2 Missense_Mutation p.E1071K 0.37 deleterious(0) benign(0) TCGA-EL-A4K6-01 12 27234344 27234344 G A C12orf71 Silent p.I191I 0.51 TCGA-EL-A4K6-01 13 73345948 73345948 C T DIS3 Silent p.V530V 0.09 TCGA-EL-A4K6-01 17 19770769 19770769 C A ULK2 5'UTR 0.20 TCGA-EL-A4K6-01 1 112240072 112240072 G A RAP1A Missense_Mutation p.V46I 0.48 tolerated(0.64) benign(0.005) TCGA-EL-A4K6-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.44 deleterious(0.01) benign(0.045) TCGA-EL-A4K6-01 1 157739926 157739926 G A FCRL2 Missense_Mutation p.P109S 0.54 deleterious(0) probably_damaging(0.998) TCGA-EL-A4K6-01 1 198608361 198608361 C T PTPRC 5'UTR 0.43 TCGA-EL-A4K6-01 1 39878974 39878974 C G KIAA0754 Missense_Mutation p.P877A 0.24 benign(0.193) TCGA-EL-A4K6-01 21 45876948 45876948 C T LRRC3 Missense_Mutation p.R141C 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-EL-A4K6-01 2 122363505 122363505 G C CLASP1 5'UTR 0.62 TCGA-EL-A4K6-01 2 179476842 179476842 G A TTN Nonsense_Mutation p.R16766* 0.53 TCGA-EL-A4K6-01 2 48066036 48066036 A G FBXO11 Silent p.C183C 0.49 TCGA-EL-A4K6-01 2 95843249 95843249 G A ZNF2 Missense_Mutation p.V19I 0.25 deleterious(0.01) possibly_damaging(0.602) TCGA-EL-A4K6-01 3 119217604 119217604 G T TIMMDC1 Silent p.P8P 0.43 TCGA-EL-A4K6-01 3 119217605 119217605 C T TIMMDC1 Missense_Mutation p.R9W 0.43 tolerated(0.05) benign(0.012) TCGA-EL-A4K6-01 3 38889182 38889182 G A SCN11A Missense_Mutation p.T1460M 0.42 deleterious(0) probably_damaging(0.967) TCGA-EL-A4K6-01 3 48561154 48561154 T C PFKFB4 Missense_Mutation p.Y401C 0.51 probably_damaging(0.979) TCGA-EL-A4K6-01 3 51697264 51697264 G A RAD54L2 Missense_Mutation p.R1411Q 0.41 tolerated_low_confidence(0.59) benign(0.287) TCGA-EL-A4K6-01 4 111539567 111539567 G C PITX2 Missense_Mutation p.S230W 0.44 deleterious(0.01) possibly_damaging(0.83) TCGA-EL-A4K6-01 5 11159811 11159811 A G CTNND2 Missense_Mutation p.L679P 0.10 deleterious(0) probably_damaging(0.976) TCGA-EL-A4K6-01 5 134785192 134785192 G A TIFAB Silent p.D146D 0.40 TCGA-EL-A4K6-01 6 26204872 26204872 C A HIST1H4E 5'UTR 0.40 TCGA-EL-A4K6-01 7 150553564 150553564 G A AOC1 Silent p.P2P 0.44 TCGA-EL-A4K6-01 7 31592727 31592727 C T CCDC129 Missense_Mutation p.A56V 0.59 tolerated(0.1) benign(0.037) TCGA-EL-A4K6-01 7 45688322 45688322 G A ADCY1 Silent p.S358S 0.27 TCGA-EL-A4K6-01 8 134050954 134050955 TC - SLA Frame_Shift_Del p.N256Pfs*26 0.31 TCGA-EL-A4K6-01 8 48686858 48686858 T C PRKDC Missense_Mutation p.N4087S 0.39 benign(0.121) TCGA-EL-A4K6-01 9 117086322 117086322 C G ORM1 Silent p.T94T 0.11 TCGA-EL-A4K7-01 10 71003048 71003048 G A HKDC1 Missense_Mutation p.G268R 0.05 deleterious(0.01) probably_damaging(0.96) TCGA-EL-A4K7-01 11 56237680 56237680 C A OR5M3 Missense_Mutation p.Q98H 0.07 deleterious(0) probably_damaging(0.999) TCGA-EL-A4K7-01 11 62300004 62300004 G A AHNAK Missense_Mutation p.P629S 0.10 probably_damaging(0.999) TCGA-EL-A4K7-01 11 6452460 6452460 A T HPX Missense_Mutation p.L457H 0.10 deleterious(0) probably_damaging(0.975) TCGA-EL-A4K7-01 11 73789474 73789474 T C C2CD3 Missense_Mutation p.H1430R 0.16 deleterious(0.02) possibly_damaging(0.876) TCGA-EL-A4K7-01 12 133502381 133502381 C A ZNF605 Nonsense_Mutation p.E533* 0.14 TCGA-EL-A4K7-01 12 14018761 14018761 C T GRIN2B Missense_Mutation p.G128R 0.05 deleterious(0) probably_damaging(1) TCGA-EL-A4K7-01 12 67699720 67699721 TT - CAND1 Frame_Shift_Del p.F759Pfs*10 0.34 TCGA-EL-A4K7-01 12 67700155 67700155 C - CAND1 Frame_Shift_Del p.R905Gfs*9 0.11 TCGA-EL-A4K7-01 13 96555250 96555250 T G UGGT2 Missense_Mutation p.N787T 0.11 tolerated(0.13) possibly_damaging(0.543) TCGA-EL-A4K7-01 14 102798009 102798009 T C ZNF839 Silent p.N414N 0.14 TCGA-EL-A4K7-01 14 106733354 106733354 G T IGHV1-24 Silent p.T47T 0.20 TCGA-EL-A4K7-01 14 55310614 55310614 T A GCH1 3'UTR 0.13 TCGA-EL-A4K7-01 15 72324844 72324844 G A MYO9A Missense_Mutation p.T309I 0.08 tolerated(0.53) benign(0.062) TCGA-EL-A4K7-01 16 5134849 5134849 G A ALG1 Silent p.V454V 0.29 TCGA-EL-A4K7-01 17 40282554 40282554 C T RAB5C Silent p.P22P 0.11 TCGA-EL-A4K7-01 17 63221354 63221354 C T RGS9 Missense_Mutation p.P548S 0.04 tolerated_low_confidence(1) benign(0.002) TCGA-EL-A4K7-01 17 7407048 7407048 C T POLR2A Missense_Mutation p.L1060F 0.12 probably_damaging(0.996) TCGA-EL-A4K7-01 17 7695278 7695278 T A DNAH2 Missense_Mutation p.M2315K 0.13 benign(0.11) TCGA-EL-A4K7-01 18 7049134 7049134 A G LAMA1 Silent p.D237D 0.11 TCGA-EL-A4K7-01 19 10476512 10476512 C A TYK2 Missense_Mutation p.R231L 0.18 deleterious(0) possibly_damaging(0.82) TCGA-EL-A4K7-01 19 36394716 36394716 C T HCST Missense_Mutation p.A51V 0.18 tolerated_low_confidence(0.37) possibly_damaging(0.787) TCGA-EL-A4K7-01 19 51645602 51645602 G T SIGLEC7 5'UTR 0.23 TCGA-EL-A4K7-01 19 54377258 54377258 C T MYADM Missense_Mutation p.R159W 0.05 tolerated(0.19) benign(0.016) TCGA-EL-A4K7-01 1 151338854 151338854 C A SELENBP1 Missense_Mutation p.G247V 0.07 deleterious(0) probably_damaging(0.991) TCGA-EL-A4K7-01 1 28233710 28233710 C G RPA2 Silent p.G67G 0.06 TCGA-EL-A4K7-01 1 77763407 77763407 C A AK5 Silent p.A193A 0.08 TCGA-EL-A4K7-01 20 745919 745919 A G SLC52A3 Missense_Mutation p.V167A 0.18 tolerated(0.28) benign(0.033) TCGA-EL-A4K7-01 21 37445106 37445106 T G CBR1 Missense_Mutation p.L254V 0.51 deleterious(0.02) probably_damaging(0.957) TCGA-EL-A4K7-01 22 19125807 19125807 G A DGCR14 Silent p.P282P 0.14 TCGA-EL-A4K7-01 22 19708122 19708122 A G SEPT5 Missense_Mutation p.N183S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-EL-A4K7-01 2 20132099 20132099 A G WDR35 Missense_Mutation p.I934T 0.05 deleterious(0) benign(0.26) TCGA-EL-A4K7-01 2 20463041 20463041 T C PUM2 Missense_Mutation p.D713G 0.16 deleterious(0) probably_damaging(0.995) TCGA-EL-A4K7-01 3 165547492 165547492 C A BCHE Missense_Mutation p.A444S 0.06 tolerated(0.31) benign(0.152) TCGA-EL-A4K7-01 3 172502587 172502587 T A ECT2 Missense_Mutation p.L607I 0.10 deleterious(0) probably_damaging(0.999) TCGA-EL-A4K7-01 3 197421354 197421354 C T KIAA0226 Missense_Mutation p.E526K 0.04 tolerated(0.07) possibly_damaging(0.576) TCGA-EL-A4K7-01 4 120072131 120072131 C T MYOZ2 Missense_Mutation p.R61C 0.09 deleterious(0) probably_damaging(1) TCGA-EL-A4K7-01 4 74719560 74719560 G A PF4V1 Missense_Mutation p.R54H 0.13 tolerated(1) benign(0.039) TCGA-EL-A4K7-01 5 54923735 54923735 T C SLC38A9 Missense_Mutation p.I502V 0.09 tolerated(0.28) benign(0.418) TCGA-EL-A4K7-01 6 41767589 41767589 C A USP49 Missense_Mutation p.R550L 0.06 deleterious(0) probably_damaging(0.999) TCGA-EL-A4K7-01 6 7585646 7585646 G A DSP Nonsense_Mutation p.W2717* 0.06 TCGA-EL-A4K7-01 7 102584658 102584658 C T LRRC17 Silent p.A310A 0.06 TCGA-EL-A4K7-01 7 128478662 128478662 G T FLNC Missense_Mutation p.G406C 0.04 deleterious(0) probably_damaging(1) TCGA-EL-A4K7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-EL-A4K7-01 7 144098189 144098189 G C NOBOX Missense_Mutation p.P265R 0.21 deleterious(0.02) possibly_damaging(0.613) TCGA-EL-A4K7-01 8 144874061 144874061 G C SCRIB Silent p.T1560T 0.19 TCGA-EL-A4K7-01 8 36780118 36780118 G A KCNU1 Missense_Mutation p.G903S 0.06 tolerated(0.54) possibly_damaging(0.467) TCGA-EL-A4K7-01 8 68030560 68030560 A G CSPP1 Missense_Mutation p.Y520C 0.04 deleterious(0) probably_damaging(0.999) TCGA-EL-A4K7-01 9 139571468 139571468 G C AGPAT2 Missense_Mutation p.S146C 0.12 deleterious(0.02) possibly_damaging(0.84) TCGA-EL-A4K7-01 X 153186148 153186148 C A ARHGAP4 Missense_Mutation p.A205S 0.24 tolerated(0.55) benign(0.007) TCGA-EL-A4K7-01 X 39922163 39922163 C A BCOR Nonsense_Mutation p.E1337* 0.54 TCGA-EL-A4K7-01 X 53432827 53432827 T C SMC1A Missense_Mutation p.K536R 0.13 deleterious(0.03) probably_damaging(0.957) TCGA-EL-A4K7-01 X 63444817 63444817 C G ASB12 Missense_Mutation p.E238D 0.34 tolerated(0.25) probably_damaging(0.992) TCGA-EL-A4K9-01 10 101180440 101180440 G A GOT1 Missense_Mutation p.R81W 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-EL-A4K9-01 10 48416491 48416491 C T GDF2 Missense_Mutation p.R68H 0.09 tolerated(0.06) benign(0.284) TCGA-EL-A4K9-01 11 126081384 126081384 G C RPUSD4 Silent p.L50L 0.05 TCGA-EL-A4K9-01 11 64037703 64037703 C - BAD Frame_Shift_Del p.G162Efs*27 0.29 TCGA-EL-A4K9-01 11 71259896 71259896 T A KRTAP5-9 Missense_Mutation p.C65S 0.03 tolerated_low_confidence(0.19) unknown(0) TCGA-EL-A4K9-01 12 26732960 26732960 C T ITPR2 Silent p.Q1503Q 0.32 TCGA-EL-A4K9-01 12 49229995 49229995 T C DDX23 Missense_Mutation p.I431V 0.29 tolerated(0.31) possibly_damaging(0.679) TCGA-EL-A4K9-01 12 52184279 52184279 G A SCN8A Missense_Mutation p.R1506H 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-EL-A4K9-01 17 73236447 73236447 C T GGA3 Silent p.G413G 0.43 TCGA-EL-A4K9-01 19 19030194 19030194 C T COPE 5'UTR 0.26 TCGA-EL-A4K9-01 1 110171834 110171834 G T AMPD2 Nonsense_Mutation p.E613* 0.21 TCGA-EL-A4K9-01 1 214818552 214818552 A G CENPF Missense_Mutation p.E1880G 0.36 possibly_damaging(0.536) TCGA-EL-A4K9-01 1 22202372 22202372 A G HSPG2 Missense_Mutation p.I1056T 0.35 benign(0) TCGA-EL-A4K9-01 21 19737548 19737548 T - TMPRSS15 Frame_Shift_Del p.R228Dfs*4 0.25 TCGA-EL-A4K9-01 3 44635702 44635702 G C ZNF660 Missense_Mutation p.R6T 0.27 tolerated_low_confidence(0.12) benign(0.019) TCGA-EL-A4K9-01 3 44635791 44635791 G C ZNF660 Missense_Mutation p.D36H 0.31 deleterious(0.02) benign(0.043) TCGA-EL-A4K9-01 6 50791398 50791398 T C TFAP2B Silent p.S120S 0.33 TCGA-EL-A4K9-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-EL-A4K9-01 7 142562146 142562146 C G EPHB6 Silent p.V196V 0.34 TCGA-EL-A4K9-01 7 70227978 70227978 A G AUTS2 Missense_Mutation p.I289V 0.10 tolerated(0.62) benign(0) TCGA-EL-A4K9-01 9 91954833 91954833 G C SECISBP2 Missense_Mutation p.E423Q 0.46 tolerated(0.38) benign(0.049) TCGA-EL-A4KD-01 12 120582584 120582584 T C GCN1L1 Silent p.P1737P 0.35 TCGA-EL-A4KD-01 12 667249 667249 G A B4GALNT3 Missense_Mutation p.V868M 0.07 deleterious(0) probably_damaging(0.997) TCGA-EL-A4KD-01 12 68043616 68043616 C T DYRK2 Missense_Mutation p.S30F 0.13 deleterious_low_confidence(0.03) benign(0.108) TCGA-EL-A4KD-01 13 110438060 110438060 G A IRS2 Missense_Mutation p.A114V 0.41 deleterious(0) probably_damaging(0.935) TCGA-EL-A4KD-01 16 20084907 20084907 T A GPR139 Missense_Mutation p.N11I 0.33 tolerated_low_confidence(0.27) benign(0.004) TCGA-EL-A4KD-01 17 15995328 15995328 G A NCOR1 Silent p.S955S 0.08 TCGA-EL-A4KD-01 17 39845179 39845179 C T EIF1 5'UTR 0.50 TCGA-EL-A4KD-01 17 72759553 72759553 C A SLC9A3R1 Silent p.S217S 0.35 TCGA-EL-A4KD-01 19 11618516 11618516 C T ECSIT Splice_Site p.X315_splice 0.33 TCGA-EL-A4KD-01 19 42821993 42821993 C T TMEM145 Nonsense_Mutation p.Q345* 0.08 TCGA-EL-A4KD-01 1 144906087 144906087 T C PDE4DIP Missense_Mutation p.Q849R 0.09 deleterious(0) probably_damaging(0.998) TCGA-EL-A4KD-01 1 153430333 153430333 G T S100A7 Missense_Mutation p.D85E 0.37 tolerated(0.07) benign(0.428) TCGA-EL-A4KD-01 1 179620127 179620127 C T TDRD5 Silent p.N642N 0.04 TCGA-EL-A4KD-01 1 63042965 63042965 G C DOCK7 Missense_Mutation p.P694A 0.28 tolerated(0.14) possibly_damaging(0.864) TCGA-EL-A4KD-01 22 30812008 30812008 C T SEC14L2 Silent p.S281S 0.27 TCGA-EL-A4KD-01 3 130282318 130282318 C T COL6A6 Silent p.D157D 0.09 TCGA-EL-A4KD-01 4 115998001 115998001 C T NDST4 Silent p.E64E 0.09 TCGA-EL-A4KD-01 4 46314729 46314729 T C GABRA2 Missense_Mutation p.Y87C 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-EL-A4KD-01 7 128588791 128588791 G T IRF5 Missense_Mutation p.Q488H 0.34 tolerated_low_confidence(0.2) benign(0.008) TCGA-EL-A4KD-01 7 27211780 27211780 C T HOXA10 Missense_Mutation p.G324D 0.06 tolerated(0.53) benign(0.011) TCGA-EL-A4KD-01 X 110951558 110951558 A G ALG13 Silent p.L229L 0.12 TCGA-EL-A4KG-01 10 116067643 116067643 G C AFAP1L2 Silent p.L331L 0.14 TCGA-EL-A4KG-01 10 33510667 33510667 A G NRP1 Missense_Mutation p.V421A 0.35 deleterious(0.02) possibly_damaging(0.764) TCGA-EL-A4KG-01 11 3845543 3845543 C G PGAP2 Silent p.L215L 0.27 TCGA-EL-A4KG-01 11 44135735 44135735 G A EXT2 Silent p.R242R 0.06 TCGA-EL-A4KG-01 11 6470119 6470119 G C TRIM3 3'UTR 0.25 TCGA-EL-A4KG-01 11 66264824 66264824 G C DPP3 Missense_Mutation p.G585A 0.36 tolerated(0.1) benign(0.382) TCGA-EL-A4KG-01 11 71820860 71820860 G C ANAPC15 3'UTR 0.25 TCGA-EL-A4KG-01 11 71822277 71822277 G A ANAPC15 Silent p.L16L 0.21 TCGA-EL-A4KG-01 11 92533689 92533689 G A FAT3 Missense_Mutation p.E2504K 0.26 probably_damaging(0.92) TCGA-EL-A4KG-01 12 112701951 112701951 C T HECTD4 Silent p.L751L 0.25 TCGA-EL-A4KG-01 12 125612771 125612771 G C AACS Missense_Mutation p.E458D 0.29 deleterious(0) probably_damaging(0.998) TCGA-EL-A4KG-01 14 105455319 105455319 C T C14orf79 Nonsense_Mutation p.Q155* 0.35 TCGA-EL-A4KG-01 14 81259151 81259151 C G CEP128 Missense_Mutation p.E505Q 0.16 tolerated(0.06) possibly_damaging(0.843) TCGA-EL-A4KG-01 14 94942490 94942490 C T SERPINA9 Missense_Mutation p.R7K 0.24 tolerated_low_confidence(1) benign(0.013) TCGA-EL-A4KG-01 15 71403760 71403760 G C CT62 Silent p.L47L 0.35 TCGA-EL-A4KG-01 15 86205661 86205661 G C AKAP13 Silent p.L1596L 0.27 TCGA-EL-A4KG-01 16 48155668 48155668 C T ABCC12 Silent p.V557V 0.28 TCGA-EL-A4KG-01 17 79804400 79804400 C G P4HB Missense_Mutation p.E321Q 0.25 deleterious(0.02) benign(0.173) TCGA-EL-A4KG-01 18 32954318 32954318 G A ZNF396 5'UTR 0.12 TCGA-EL-A4KG-01 19 42912472 42912472 G A LIPE Silent p.F474F 0.22 TCGA-EL-A4KG-01 19 49005818 49005818 G C LMTK3 Silent p.L251L 0.17 TCGA-EL-A4KG-01 1 1269281 1269281 C T TAS1R3 Silent p.L666L 0.20 TCGA-EL-A4KG-01 1 145555755 145555755 C T ANKRD35 Missense_Mutation p.R35C 0.35 deleterious(0.03) possibly_damaging(0.898) TCGA-EL-A4KG-01 1 151265367 151265367 G C PI4KB Silent p.L816L 0.23 TCGA-EL-A4KG-01 1 152127926 152127926 G A RPTN Missense_Mutation p.T550I 0.05 deleterious(0.01) benign(0.021) TCGA-EL-A4KG-01 1 152129034 152129034 G A RPTN Missense_Mutation p.H181Y 0.21 tolerated(0.11) possibly_damaging(0.459) TCGA-EL-A4KG-01 1 201197682 201197682 G A IGFN1 3'UTR 0.19 TCGA-EL-A4KG-01 1 23688762 23688762 G A ZNF436 Silent p.F371F 0.23 TCGA-EL-A4KG-01 1 27278146 27278146 G T C1orf172 Silent p.L242L 0.20 TCGA-EL-A4KG-01 1 33363789 33363789 G C TMEM54 Missense_Mutation p.Q50E 0.28 tolerated(0.6) benign(0.034) TCGA-EL-A4KG-01 1 43829727 43829727 G A ELOVL1 Missense_Mutation p.H234Y 0.26 tolerated(1) probably_damaging(0.999) TCGA-EL-A4KG-01 1 6635194 6635194 G A TAS1R1 Silent p.L334L 0.32 TCGA-EL-A4KG-01 20 5904455 5904455 G A CHGB Silent p.L555L 0.26 TCGA-EL-A4KG-01 22 19118936 19118936 G A TSSK2 Silent p.R8R 0.23 TCGA-EL-A4KG-01 2 46803742 46803742 G C RHOQ Missense_Mutation p.D137H 0.23 tolerated(0.06) benign(0.002) TCGA-EL-A4KG-01 2 67632194 67632194 T C ETAA1 Silent p.L794L 0.38 TCGA-EL-A4KG-01 2 85532449 85532449 G A TCF7L1 Silent p.G304G 0.28 TCGA-EL-A4KG-01 3 111603725 111603725 G A PHLDB2 Silent p.L267L 0.30 TCGA-EL-A4KG-01 3 187443336 187443336 G C BCL6 Missense_Mutation p.S597C 0.21 deleterious(0) possibly_damaging(0.863) TCGA-EL-A4KG-01 3 49724229 49724229 G T MST1 Silent p.L245L 0.18 TCGA-EL-A4KG-01 4 853445 853445 G A GAK Nonsense_Mutation p.Q1078* 0.23 TCGA-EL-A4KG-01 5 96503564 96503564 G A RIOK2 Missense_Mutation p.S335L 0.18 tolerated(0.19) benign(0.009) TCGA-EL-A4KG-01 6 136597418 136597418 G A BCLAF1 Silent p.V415V 0.19 TCGA-EL-A4KG-01 6 142510607 142510607 C G VTA1 Missense_Mutation p.I152M 0.41 deleterious(0) probably_damaging(1) TCGA-EL-A4KG-01 6 159457891 159457891 G C TAGAP Silent p.L388L 0.22 TCGA-EL-A4KG-01 6 33255922 33255922 C T WDR46 Intron 0.24 TCGA-EL-A4KG-01 6 41555185 41555186 - C FOXP4 Frame_Shift_Ins p.L272Pfs*44 0.30 TCGA-EL-A4KG-01 6 56397207 56397207 C G DST Missense_Mutation p.K3058N 0.12 probably_damaging(0.989) TCGA-EL-A4KG-01 6 56438569 56438569 C G DST Missense_Mutation p.D1759H 0.23 possibly_damaging(0.569) TCGA-EL-A4KG-01 6 85472299 85472299 C T TBX18 Missense_Mutation p.E154K 0.20 deleterious(0.03) probably_damaging(0.972) TCGA-EL-A4KG-01 7 100695160 100695160 C A MUC17 Silent p.I4340I 0.18 TCGA-EL-A4KG-01 7 138258373 138258373 C T TRIM24 Missense_Mutation p.S667F 0.21 deleterious(0) probably_damaging(0.982) TCGA-EL-A4KG-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-EL-A4KG-01 7 151856077 151856077 C G KMT2C Missense_Mutation p.K3847N 0.21 possibly_damaging(0.765) TCGA-EL-A4KG-01 7 158478911 158478911 C G NCAPG2 Missense_Mutation p.E264Q 0.36 deleterious(0) probably_damaging(0.938) TCGA-EL-A4KG-01 8 96044311 96044311 G A NDUFAF6 Missense_Mutation p.E96K 0.26 deleterious(0) probably_damaging(0.973) TCGA-EL-A4KG-01 9 133936606 133936606 G C LAMC3 Missense_Mutation p.Q781H 0.15 deleterious(0) probably_damaging(0.991) TCGA-EL-A4KG-01 9 73461349 73461349 G C TRPM3 Silent p.L207L 0.17 TCGA-EL-A4KG-01 X 138871491 138871491 C G ATP11C Missense_Mutation p.D458H 0.17 tolerated(0.11) possibly_damaging(0.617) TCGA-EL-A4KG-01 X 34648444 34648444 C A TMEM47 Nonsense_Mutation p.E178* 0.25 TCGA-EL-A4KH-01 12 6707418 6707418 G A CHD4 Silent p.Y552Y 0.04 TCGA-EL-A4KH-01 2 192701209 192701209 C T SDPR Missense_Mutation p.D240N 0.03 deleterious(0) probably_damaging(0.968) TCGA-EL-A4KH-01 6 33281527 33281527 G A TAPBP Missense_Mutation p.P51L 0.14 deleterious(0.03) benign(0.207) TCGA-EL-A4KH-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-EL-A4KH-01 7 149152881 149152881 C A ZNF777 Missense_Mutation p.G78V 0.37 deleterious_low_confidence(0.02) benign(0.067) TCGA-EL-A4KI-01 10 128973908 128973908 G A FAM196A Missense_Mutation p.T251M 0.29 deleterious(0.01) probably_damaging(0.977) TCGA-EL-A4KI-01 10 73560398 73560398 C T CDH23 Silent p.D216D 0.50 TCGA-EL-A4KI-01 11 133801601 133801601 G T IGSF9B Nonsense_Mutation p.Y400* 0.33 TCGA-EL-A4KI-01 11 75907721 75907721 G A WNT11 Missense_Mutation p.T42M 0.26 deleterious(0.01) possibly_damaging(0.877) TCGA-EL-A4KI-01 12 120611492 120611492 T A GCN1L1 Missense_Mutation p.H444L 0.10 benign(0.25) TCGA-EL-A4KI-01 13 49039494 49039494 C T RB1 Missense_Mutation p.P827S 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-EL-A4KI-01 13 84454817 84454817 C A SLITRK1 Missense_Mutation p.A276S 0.30 tolerated(0.93) benign(0.008) TCGA-EL-A4KI-01 16 2812763 2812763 C T SRRM2 Missense_Mutation p.S745L 0.16 unknown(0) TCGA-EL-A4KI-01 17 19463805 19463805 C T SLC47A1 Nonsense_Mutation p.R369* 0.21 TCGA-EL-A4KI-01 17 28380836 28380836 T C EFCAB5 Missense_Mutation p.S622P 0.22 deleterious(0.04) possibly_damaging(0.515) TCGA-EL-A4KI-01 17 73055633 73055633 T A KCTD2 Missense_Mutation p.L190Q 0.49 deleterious(0) probably_damaging(0.981) TCGA-EL-A4KI-01 19 11624902 11624902 C T ECSIT Silent p.G77G 0.44 TCGA-EL-A4KI-01 19 16908636 16908636 C T NWD1 Missense_Mutation p.T1133M 0.39 deleterious(0.02) benign(0.102) TCGA-EL-A4KI-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.66 tolerated(0.06) benign(0.006) TCGA-EL-A4KI-01 20 4705313 4705313 C T PRND Missense_Mutation p.A39V 0.07 tolerated_low_confidence(0.14) possibly_damaging(0.739) TCGA-EL-A4KI-01 22 45601543 45601543 C T KIAA0930 Missense_Mutation p.G133R 0.42 tolerated(0.47) possibly_damaging(0.747) TCGA-EL-A4KI-01 2 159481720 159481720 G T PKP4 Missense_Mutation p.V312L 0.35 tolerated(0.3) benign(0) TCGA-EL-A4KI-01 2 179629473 179629473 G A TTN Missense_Mutation p.R3257C 0.26 TCGA-EL-A4KI-01 3 167090694 167090694 A T ZBBX 5'UTR 0.24 TCGA-EL-A4KI-01 4 46390678 46390678 C - GABRA2 Frame_Shift_Del p.V16Ffs*59 0.17 TCGA-EL-A4KI-01 8 120790278 120790278 T C TAF2 Missense_Mutation p.N782S 0.45 deleterious(0) probably_damaging(0.978) TCGA-EL-A4KI-01 8 26238955 26238955 G A BNIP3L 5'Flank 0.36 TCGA-EM-A1CS-01 11 1221142 1221142 G A MUC5AC RNA 0.46 TCGA-EM-A1CS-01 13 111870032 111870032 A G ARHGEF7 Missense_Mutation p.T180A 0.04 tolerated(0.15) possibly_damaging(0.867) TCGA-EM-A1CS-01 17 80441789 80441789 C G NARF Intron 0.56 TCGA-EM-A1CS-01 20 37002620 37002620 G A LBP Missense_Mutation p.R455H 0.26 tolerated(0.52) benign(0.002) TCGA-EM-A1CS-01 3 148460051 148460051 G T AGTR1 3'UTR 0.52 TCGA-EM-A1CS-01 3 75679970 75679970 G T MIR1324 RNA 0.05 TCGA-EM-A1CS-01 3 97486927 97486927 G T ARL6 Intron 0.28 TCGA-EM-A1CS-01 5 128863519 128863519 A T ADAMTS19 Missense_Mutation p.T383S 0.36 tolerated(0.72) benign(0.088) TCGA-EM-A1CS-01 6 27223142 27223142 T C PRSS16 3'UTR 0.44 TCGA-EM-A1CS-01 9 116839008 116839008 A C AMBP Missense_Mutation p.W44G 0.29 deleterious(0) probably_damaging(0.987) TCGA-EM-A1CS-01 X 100880307 100880307 C A ARMCX3 Nonsense_Mutation p.S113* 0.11 TCGA-EM-A1CT-01 11 108178672 108178672 C - ATM Frame_Shift_Del p.T1908Kfs*9 0.22 TCGA-EM-A1CT-01 11 123513260 123513260 G A SCN3B Silent p.N113N 0.05 TCGA-EM-A1CT-01 11 124618648 124618648 C T VSIG2 Missense_Mutation p.G200S 0.39 deleterious(0) probably_damaging(1) TCGA-EM-A1CT-01 12 88514828 88514828 C T CEP290 Silent p.R435R 0.26 TCGA-EM-A1CT-01 12 98927427 98927427 T C TMPO Silent p.V464V 0.39 TCGA-EM-A1CT-01 13 101735461 101735461 C T NALCN Silent p.S1224S 0.36 TCGA-EM-A1CT-01 13 20220952 20220952 A T MPHOSPH8 Nonsense_Mutation p.K247* 0.38 TCGA-EM-A1CT-01 14 94936076 94936076 G A SERPINA9 Silent p.S52S 0.36 TCGA-EM-A1CT-01 1 100681607 100681607 A G DBT Missense_Mutation p.M235T 0.39 tolerated(0.6) benign(0) TCGA-EM-A1CT-01 1 153906083 153906083 C T DENND4B Missense_Mutation p.R1069H 0.38 deleterious(0.03) probably_damaging(0.991) TCGA-EM-A1CT-01 1 185969305 185969305 G C HMCN1 Missense_Mutation p.E1335Q 0.49 benign(0.438) TCGA-EM-A1CT-01 1 43882304 43882304 T G SZT2 Missense_Mutation p.F291V 0.60 deleterious(0) probably_damaging(0.962) TCGA-EM-A1CT-01 1 8526058 8526058 C T RERE Missense_Mutation p.G377D 0.06 probably_damaging(0.997) TCGA-EM-A1CT-01 20 62421407 62421407 G A ZBTB46 Missense_Mutation p.P235L 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-EM-A1CT-01 3 180334307 180334307 T C CCDC39 Silent p.Q861Q 0.45 TCGA-EM-A1CT-01 3 58196616 58196616 G C DNASE1L3 Silent p.A6A 0.38 TCGA-EM-A1CT-01 4 108829718 108829718 C G SGMS2 Intron 0.40 TCGA-EM-A1CT-01 6 26158671 26158671 T C HIST1H2BD Missense_Mutation p.S92P 0.42 deleterious_low_confidence(0.01) benign(0.06) TCGA-EM-A1CT-01 7 106509419 106509419 C A PIK3CG Missense_Mutation p.H471Q 0.38 deleterious(0) probably_damaging(0.995) TCGA-EM-A1CT-01 7 111484884 111484884 A G DOCK4 Silent p.L891L 0.05 TCGA-EM-A1CT-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-EM-A1CT-01 7 23293036 23293036 G T GPNMB Missense_Mutation p.V61L 0.06 tolerated(0.29) benign(0.441) TCGA-EM-A1CT-01 7 99722478 99722484 AAGCCAC CTT CNPY4 Frame_Shift_Del p.S239Ffs*14 0.09 TCGA-EM-A1CT-01 8 30694875 30694875 C T TEX15 Silent p.V2592V 0.37 TCGA-EM-A1CT-01 8 82614952 82614952 T A ZFAND1 Missense_Mutation p.N262I 0.39 deleterious(0) possibly_damaging(0.602) TCGA-EM-A1CT-01 8 94936058 94936058 C G PDP1 3'UTR 0.25 TCGA-EM-A1CT-01 X 48403341 48403341 C A TBC1D25 Silent p.L106L 0.08 TCGA-EM-A1CU-01 10 82267030 82267030 A G TSPAN14 Missense_Mutation p.D60G 0.09 deleterious(0) probably_damaging(1) TCGA-EM-A1CU-01 11 122931873 122931873 C T HSPA8 Missense_Mutation p.A54T 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.723) TCGA-EM-A1CU-01 12 113388602 113388602 C T OAS3 Silent p.R493R 0.20 TCGA-EM-A1CU-01 12 54936440 54936440 G A NCKAP1L Missense_Mutation p.E1119K 0.06 tolerated(0.23) possibly_damaging(0.507) TCGA-EM-A1CU-01 16 66757703 66757703 A - DYNC1LI2 Frame_Shift_Del p.N467Kfs*9 0.14 TCGA-EM-A1CU-01 21 44836663 44836663 G A SIK1 Silent p.L771L 0.25 TCGA-EM-A1CU-01 2 203644215 203644215 A G ICA1L 3'UTR 0.12 TCGA-EM-A1CU-01 2 29226385 29226385 T A FAM179A Missense_Mutation p.C223S 0.50 tolerated(0.1) benign(0.011) TCGA-EM-A1CU-01 3 107429455 107429455 G A BBX Missense_Mutation p.E50K 0.15 deleterious(0.01) benign(0.006) TCGA-EM-A1CU-01 3 183655701 183655701 C A ABCC5 Missense_Mutation p.S1281I 0.15 tolerated(0.51) benign(0.021) TCGA-EM-A1CU-01 3 49898222 49898222 C A CAMKV Missense_Mutation p.K234N 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-EM-A1CU-01 5 140812165 140812165 G A PCDHGA12 Silent p.E613E 0.37 TCGA-EM-A1CU-01 6 106992724 106992724 G T AIM1 Missense_Mutation p.S1335I 0.18 deleterious(0.04) possibly_damaging(0.879) TCGA-EM-A1CU-01 6 26027331 26027331 C G HIST1H4B Missense_Mutation p.L50F 0.37 deleterious(0.02) benign(0.091) TCGA-EM-A1CU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EM-A1CU-01 9 136635556 136635556 T - VAV2 Frame_Shift_Del p.K764Sfs*69 0.21 TCGA-EM-A1CU-01 X 51644751 51644751 G A MAGED1 Missense_Mutation p.A744T 0.77 deleterious_low_confidence(0.01) probably_damaging(0.91) TCGA-EM-A1CV-01 10 104353455 104353455 G A SUFU Silent p.L220L 0.10 TCGA-EM-A1CV-01 10 27687711 27687711 C A PTCHD3 Missense_Mutation p.V606F 0.33 deleterious(0) benign(0.219) TCGA-EM-A1CV-01 10 91144563 91144563 G A IFIT1B 3'UTR 0.42 TCGA-EM-A1CV-01 19 55423572 55423572 C T NCR1 Missense_Mutation p.T240M 0.41 tolerated(0.16) benign(0.003) TCGA-EM-A1CV-01 1 62728839 62728839 G A KANK4 Missense_Mutation p.H822Y 0.33 tolerated(0.09) benign(0) TCGA-EM-A1CV-01 22 19419005 19419006 - GCC HIRA 5'UTR 0.31 TCGA-EM-A1CV-01 2 231113619 231113619 T A SP140 Silent p.T304T 0.47 TCGA-EM-A1CV-01 4 83840219 83840219 A T THAP9 3'UTR 0.50 TCGA-EM-A1CV-01 6 637797 637797 G A EXOC2 Missense_Mutation p.P8S 0.49 deleterious(0) probably_damaging(0.992) TCGA-EM-A1CV-01 7 138305790 138305790 C - SVOPL Splice_Site p.X451_splice 0.24 TCGA-EM-A1CV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-EM-A1CV-01 9 111706098 111706098 T A CTNNAL1 Splice_Site p.X648_splice 0.21 TCGA-EM-A1CV-01 X 135430491 135430491 A C GPR112 Silent p.T1542T 0.04 TCGA-EM-A1CV-01 X 41073950 41073950 A G USP9X Silent p.K1773K 0.22 TCGA-EM-A1CW-01 10 20506361 20506361 G C PLXDC2 Missense_Mutation p.E377Q 0.05 tolerated(0.22) benign(0.146) TCGA-EM-A1CW-01 10 34985316 34985316 A C PARD3 Missense_Mutation p.L51W 0.13 deleterious(0) probably_damaging(1) TCGA-EM-A1CW-01 14 65453792 65453793 - A FNTB Frame_Shift_Ins p.T42Nfs*53 0.31 TCGA-EM-A1CW-01 17 29508804 29508804 G T NF1 Splice_Site p.X244_splice 0.20 TCGA-EM-A1CW-01 1 149902758 149902758 C A MTMR11 Missense_Mutation p.D464Y 0.28 deleterious(0) probably_damaging(1) TCGA-EM-A1CW-01 1 248366655 248366655 G T OR2M3 Missense_Mutation p.G96C 0.28 deleterious(0) probably_damaging(0.954) TCGA-EM-A1CW-01 4 158142278 158142278 G C GRIA2 Missense_Mutation p.Q28H 0.22 tolerated(0.2) possibly_damaging(0.757) TCGA-EM-A1CW-01 6 150174150 150174150 C - LRP11 Frame_Shift_Del p.V254Wfs*3 0.26 TCGA-EM-A1CW-01 9 104192048 104192048 C T ALDOB Missense_Mutation p.V105M 0.26 deleterious(0.05) possibly_damaging(0.894) TCGA-EM-A1YA-01 11 18731052 18731052 G C IGSF22 Nonsense_Mutation p.Y960* 0.04 TCGA-EM-A1YA-01 15 72495521 72495521 A G PKM Silent p.R383R 0.07 TCGA-EM-A1YA-01 17 7734055 7734055 G A DNAH2 Missense_Mutation p.G4042D 0.05 benign(0.155) TCGA-EM-A1YA-01 19 43766171 43766171 C A PSG9 Missense_Mutation p.G184C 0.40 deleterious(0.02) probably_damaging(1) TCGA-EM-A1YA-01 20 37005463 37005463 C T LBP 3'UTR 0.21 TCGA-EM-A1YA-01 21 19666639 19666639 C T TMPRSS15 Missense_Mutation p.A812T 0.07 deleterious(0) probably_damaging(0.983) TCGA-EM-A1YA-01 2 113174792 113174792 C T RGPD8 Missense_Mutation p.E254K 0.32 tolerated(0.14) benign(0.073) TCGA-EM-A1YA-01 2 65540763 65540763 G A SPRED2 Missense_Mutation p.R377W 0.08 deleterious(0) probably_damaging(1) TCGA-EM-A1YA-01 2 69623326 69623326 T A NFU1 3'UTR 0.32 TCGA-EM-A1YA-01 3 9517814 9517814 T C SETD5 3'UTR 0.54 TCGA-EM-A1YA-01 4 113362205 113362205 A G ALPK1 Missense_Mutation p.E1224G 0.32 deleterious(0.01) benign(0.41) TCGA-EM-A1YA-01 6 132171195 132171195 G A ENPP1 Missense_Mutation p.V127I 0.10 tolerated(0.12) possibly_damaging(0.903) TCGA-EM-A1YA-01 8 82606560 82606560 T A SLC10A5 Silent p.P216P 0.36 TCGA-EM-A1YA-01 9 95050407 95050407 C G IARS Splice_Site p.X92_splice 0.05 TCGA-EM-A1YA-01 X 20148725 20148725 G A EIF1AX Missense_Mutation p.A113V 0.33 tolerated(0.32) benign(0.033) TCGA-EM-A1YA-01 X 20148726 20148726 C A EIF1AX Splice_Site p.X113_splice 0.33 TCGA-EM-A1YB-01 10 114298090 114298090 G A VTI1A Splice_Site p.X143_splice 0.20 TCGA-EM-A1YB-01 10 74033938 74033938 G A DDIT4 5'UTR 0.22 TCGA-EM-A1YB-01 10 75053191 75053191 C T TTC18 Intron 0.09 TCGA-EM-A1YB-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.32 TCGA-EM-A1YB-01 11 66306969 66306969 C T ZDHHC24 3'UTR 0.27 TCGA-EM-A1YB-01 11 94963999 94963999 G A SESN3 Missense_Mutation p.S9L 0.33 tolerated_low_confidence(0.67) benign(0) TCGA-EM-A1YB-01 12 1025494 1025494 C T RAD52 Intron 0.39 TCGA-EM-A1YB-01 12 49742735 49742735 G A DNAJC22 Missense_Mutation p.R27K 0.05 deleterious(0.01) probably_damaging(0.925) TCGA-EM-A1YB-01 15 31283767 31283767 C T MTMR10 5'UTR 0.16 TCGA-EM-A1YB-01 15 33833092 33833092 G A RYR3 Splice_Site p.X216_splice 0.08 TCGA-EM-A1YB-01 15 40630052 40630052 C T C15orf52 Missense_Mutation p.E230K 0.18 tolerated(0.07) possibly_damaging(0.904) TCGA-EM-A1YB-01 15 84257484 84257484 C T SH3GL3 Missense_Mutation p.L267F 0.30 tolerated(0.72) benign(0) TCGA-EM-A1YB-01 15 90617455 90617455 C T ZNF710 Silent p.L586L 0.34 TCGA-EM-A1YB-01 16 12121194 12121194 C T SNX29 Missense_Mutation p.A47V 0.31 tolerated(0.07) possibly_damaging(0.87) TCGA-EM-A1YB-01 16 1828539 1828539 G A SPSB3 Silent p.G67G 0.24 TCGA-EM-A1YB-01 16 68679273 68679273 C T CDH3 5'UTR 0.24 TCGA-EM-A1YB-01 17 18967379 18967379 C T SNORD3B-2 RNA 0.23 TCGA-EM-A1YB-01 17 36896590 36896590 C T PCGF2 Silent p.G22G 0.16 TCGA-EM-A1YB-01 17 36896591 36896591 C T PCGF2 Missense_Mutation p.G22E 0.16 deleterious(0.01) probably_damaging(0.965) TCGA-EM-A1YB-01 17 48046735 48046735 G T DLX4 5'UTR 0.21 TCGA-EM-A1YB-01 17 48156836 48156836 G T ITGA3 Missense_Mutation p.R874L 0.05 tolerated(0.07) probably_damaging(0.972) TCGA-EM-A1YB-01 17 6939881 6939881 C T SLC16A13 Silent p.I60I 0.10 TCGA-EM-A1YB-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.25 TCGA-EM-A1YB-01 18 10526109 10526109 C T NAPG Nonsense_Mutation p.Q4* 0.08 TCGA-EM-A1YB-01 19 13056748 13056748 C T RAD23A 5'UTR 0.25 TCGA-EM-A1YB-01 19 21579990 21579990 C T ZNF493 5'UTR 0.35 TCGA-EM-A1YB-01 19 23544777 23544777 G A ZNF91 Missense_Mutation p.S335L 0.20 deleterious(0.02) benign(0.307) TCGA-EM-A1YB-01 19 39787080 39787080 G A IFNL1 Missense_Mutation p.V7M 0.25 tolerated(0.07) benign(0.33) TCGA-EM-A1YB-01 1 10720553 10720553 C T CASZ1 Missense_Mutation p.M182I 0.18 deleterious_low_confidence(0.03) benign(0.26) TCGA-EM-A1YB-01 1 155149705 155149705 G A TRIM46 Missense_Mutation p.G283E 0.22 deleterious(0.04) benign(0.164) TCGA-EM-A1YB-01 1 171178164 171178164 G A FMO2 3'UTR 0.36 TCGA-EM-A1YB-01 1 197115496 197115496 C T ASPM Silent p.L24L 0.20 TCGA-EM-A1YB-01 1 52499429 52499429 G A KTI12 Missense_Mutation p.P2L 0.25 deleterious(0) probably_damaging(0.999) TCGA-EM-A1YB-01 1 94054850 94054850 C T BCAR3 Missense_Mutation p.V205I 0.14 tolerated(0.09) benign(0.068) TCGA-EM-A1YB-01 21 46047986 46047986 C T KRTAP10-9 3'UTR 0.26 TCGA-EM-A1YB-01 2 219134836 219134836 C T AAMP 5'UTR 0.26 TCGA-EM-A1YB-01 2 8822537 8822537 C T ID2 Missense_Mutation p.S81L 0.29 tolerated(0.06) benign(0.002) TCGA-EM-A1YB-01 3 112357200 112357200 G T CCDC80 Missense_Mutation p.S518Y 0.30 deleterious(0) possibly_damaging(0.896) TCGA-EM-A1YB-01 3 127335823 127335823 C T MCM2 Silent p.F545F 0.37 TCGA-EM-A1YB-01 3 129324718 129324718 G A PLXND1 Silent p.F255F 0.16 TCGA-EM-A1YB-01 4 128554328 128554328 G A INTU Missense_Mutation p.D47N 0.07 tolerated(0.14) benign(0.004) TCGA-EM-A1YB-01 4 144109022 144109022 G A USP38 Silent p.Q242Q 0.06 TCGA-EM-A1YB-01 4 185550615 185550615 G A CASP3 Silent p.F215F 0.28 TCGA-EM-A1YB-01 4 39460022 39460022 G A RPL9 Missense_Mutation p.P13L 0.18 deleterious(0) probably_damaging(0.952) TCGA-EM-A1YB-01 4 39460023 39460023 G A RPL9 Missense_Mutation p.P13S 0.18 deleterious(0) probably_damaging(0.913) TCGA-EM-A1YB-01 4 44705021 44705021 T A GNPDA2 3'UTR 0.48 TCGA-EM-A1YB-01 5 100238737 100238737 A G ST8SIA4 5'UTR 0.14 TCGA-EM-A1YB-01 5 10973762 10973762 G C CTNND2 Missense_Mutation p.Q1161E 0.27 tolerated(0.12) benign(0.057) TCGA-EM-A1YB-01 5 115177522 115177522 C A ATG12 5'UTR 0.67 TCGA-EM-A1YB-01 5 131411610 131411610 C T CSF2 3'UTR 0.27 TCGA-EM-A1YB-01 5 140573408 140573408 C T PCDHB10 Missense_Mutation p.T428I 0.41 deleterious_low_confidence(0.03) benign(0.067) TCGA-EM-A1YB-01 6 142409595 142409595 G A NMBR Silent p.I67I 0.38 TCGA-EM-A1YB-01 6 26056662 26056662 G A HIST1H1C 5'UTR 0.08 TCGA-EM-A1YB-01 6 26156747 26156747 C T HIST1H1E Silent p.L43L 0.24 TCGA-EM-A1YB-01 6 30121959 30121959 G A TRIM10 Silent p.F411F 0.32 TCGA-EM-A1YB-01 6 36983609 36983609 G C FGD2 Missense_Mutation p.R365S 0.25 deleterious(0) probably_damaging(0.914) TCGA-EM-A1YB-01 6 41254385 41254385 C T TREM1 Silent p.K3K 0.20 TCGA-EM-A1YB-01 7 23749845 23749845 A T STK31 5'UTR 0.30 TCGA-EM-A1YB-01 8 126033114 126033114 G A SQLE Splice_Site p.X511_splice 0.25 TCGA-EM-A1YB-01 8 95738654 95738657 GAAA - DPY19L4 Frame_Shift_Del p.R39Lfs*25 0.26 TCGA-EM-A1YB-01 9 127915858 127915858 C G PPP6C Missense_Mutation p.S245T 0.58 deleterious(0) probably_damaging(0.997) TCGA-EM-A1YB-01 9 138391667 138391667 C T C9orf116 Missense_Mutation p.E11K 0.44 tolerated(0.19) benign(0.004) TCGA-EM-A1YB-01 9 14824915 14824915 C A FREM1 Missense_Mutation p.V653F 0.20 deleterious(0) probably_damaging(0.973) TCGA-EM-A1YB-01 X 110653602 110653602 C A DCX Missense_Mutation p.D90Y 0.19 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-EM-A1YB-01 X 120008779 120008779 G A CT47B1 Missense_Mutation p.P249L 0.36 deleterious(0) unknown(0) TCGA-EM-A1YC-01 10 70164495 70164495 A T RUFY2 Missense_Mutation p.D72E 0.06 deleterious(0) benign(0.414) TCGA-EM-A1YC-01 11 108216586 108216586 G T ATM Missense_Mutation p.W2845C 0.53 deleterious(0) probably_damaging(1) TCGA-EM-A1YC-01 11 71943766 71943766 C T INPPL1 Silent p.F603F 0.06 TCGA-EM-A1YC-01 12 59274443 59274443 G A LRIG3 Missense_Mutation p.A574V 0.05 tolerated(0.05) benign(0.098) TCGA-EM-A1YC-01 15 85641259 85641259 A G PDE8A Silent p.G311G 0.14 TCGA-EM-A1YC-01 17 11584043 11584043 C G DNAH9 Missense_Mutation p.L1194V 0.13 benign(0.411) TCGA-EM-A1YC-01 17 7752257 7752257 C T KDM6B Missense_Mutation p.A884V 0.20 possibly_damaging(0.695) TCGA-EM-A1YC-01 17 77768317 77768317 T G CBX8 3'UTR 0.36 TCGA-EM-A1YC-01 18 30554616 30554616 T C CCDC178 Silent p.T806T 0.36 TCGA-EM-A1YC-01 1 82436030 82436030 C G LPHN2 Missense_Mutation p.H905Q 0.38 deleterious(0.02) possibly_damaging(0.791) TCGA-EM-A1YC-01 21 45483558 45483558 G A TRAPPC10 Silent p.L310L 0.06 TCGA-EM-A1YC-01 3 45135081 45135081 G A CDCP1 Silent p.L439L 0.06 TCGA-EM-A1YC-01 4 147560243 147560243 G T POU4F2 5'UTR 0.19 TCGA-EM-A1YC-01 5 82940234 82940234 C A HAPLN1 Missense_Mutation p.W241C 0.11 deleterious(0) possibly_damaging(0.454) TCGA-EM-A1YC-01 6 30707947 30707947 G C FLOT1 Silent p.A237A 0.16 TCGA-EM-A1YC-01 7 137792293 137792293 C T AKR1D1 Silent p.S274S 0.04 TCGA-EM-A1YC-01 9 2635558 2635558 A G VLDLR Missense_Mutation p.D63G 0.03 deleterious(0) probably_damaging(0.998) TCGA-EM-A1YC-01 X 100349805 100349805 G A TMEM35 Missense_Mutation p.G122R 0.12 tolerated(0.35) probably_damaging(0.939) TCGA-EM-A1YC-01 X 13624630 13624630 T C EGFL6 Missense_Mutation p.I218T 0.09 deleterious(0.03) benign(0.016) TCGA-EM-A1YD-01 10 88459226 88459226 A G LDB3 Intron 0.22 TCGA-EM-A1YD-01 11 32414222 32414222 C A WT1 Missense_Mutation p.R443S 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-EM-A1YD-01 12 53225273 53225273 C T KRT79 Silent p.T205T 0.21 TCGA-EM-A1YD-01 16 58031260 58031260 G A ZNF319 Nonsense_Mutation p.Q304* 0.09 TCGA-EM-A1YD-01 20 41306647 41306647 G A PTPRT Missense_Mutation p.H338Y 0.10 deleterious(0) benign(0.265) TCGA-EM-A1YD-01 4 188924090 188924090 C T ZFP42 Silent p.V43V 0.40 TCGA-EM-A1YD-01 7 26766512 26766512 G A SKAP2 Missense_Mutation p.R195C 0.31 deleterious(0) probably_damaging(0.991) TCGA-EM-A1YD-01 X 1743168 1743168 A G ASMT Missense_Mutation p.Y84C 0.26 deleterious(0.03) possibly_damaging(0.551) TCGA-EM-A1YE-01 10 50902514 50902514 T A C10orf53 Intron 0.57 TCGA-EM-A1YE-01 12 120802533 120802533 C T MSI1 Missense_Mutation p.R98Q 0.33 deleterious(0) probably_damaging(0.97) TCGA-EM-A1YE-01 17 40034394 40034394 G A ACLY Missense_Mutation p.P817S 0.07 deleterious(0.05) possibly_damaging(0.588) TCGA-EM-A1YE-01 19 47570455 47570455 G A ZC3H4 Missense_Mutation p.R1024W 0.57 unknown(0) TCGA-EM-A1YE-01 1 158225840 158225840 A G CD1A Silent p.G124G 0.04 TCGA-EM-A1YE-01 1 37346338 37346338 G A GRIK3 Silent p.Y149Y 0.09 TCGA-EM-A1YE-01 22 40815091 40815091 G A MKL1 Missense_Mutation p.P451S 0.62 tolerated(0.1) benign(0.123) TCGA-EM-A1YE-01 2 196913064 196913064 T C DNAH7 Missense_Mutation p.D69G 0.12 tolerated_low_confidence(0.17) benign(0.001) TCGA-EM-A1YE-01 5 142150381 142150381 C T ARHGAP26 Nonsense_Mutation p.R19* 0.18 TCGA-EM-A1YE-01 5 88119647 88119648 - T MEF2C 5'UTR 0.27 TCGA-EM-A1YE-01 7 128119449 128119449 G A METTL2B Missense_Mutation p.S147N 0.17 tolerated(0.33) benign(0.051) TCGA-EM-A1YE-01 7 14378197 14378198 - T DGKB Frame_Shift_Ins p.G690Rfs*3 0.31 TCGA-EM-A1YE-01 7 5399130 5399130 C G TNRC18 Missense_Mutation p.G1578R 0.17 probably_damaging(0.994) TCGA-EM-A1YE-01 9 125273560 125273560 C T OR1J2 Silent p.T160T 0.09 TCGA-EM-A22I-01 10 85944480 85944480 G A C10orf99 Silent p.E68E 0.07 TCGA-EM-A22I-01 11 65272365 65272368 TAAA - MALAT1 RNA 0.38 TCGA-EM-A22I-01 16 72831798 72831798 G C ZFHX3 Missense_Mutation p.P1595A 0.30 probably_damaging(0.994) TCGA-EM-A22I-01 17 37333738 37333738 C T CACNB1 Silent p.E399E 0.36 TCGA-EM-A22I-01 20 47621731 47621731 C T ARFGEF2 Missense_Mutation p.P1186L 0.11 deleterious(0) probably_damaging(1) TCGA-EM-A22I-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-EM-A22I-01 7 47944122 47944122 C T PKD1L1 Missense_Mutation p.R595Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-EM-A22I-01 8 145113595 145113595 C T OPLAH Splice_Site p.X196_splice 0.16 TCGA-EM-A22I-01 8 86050374 86050374 T A LRRCC1 Missense_Mutation p.D866E 0.52 tolerated(1) benign(0.003) TCGA-EM-A22I-01 9 125639844 125639844 A G RC3H2 Missense_Mutation p.Y411H 0.04 deleterious(0) probably_damaging(0.995) TCGA-EM-A22I-01 X 153228845 153228845 G A HCFC1 Silent p.G181G 0.34 TCGA-EM-A22J-01 11 36248871 36248871 G A LDLRAD3 Missense_Mutation p.V231I 0.34 deleterious_low_confidence(0.02) benign(0.097) TCGA-EM-A22J-01 11 36484063 36484063 C T PRR5L Missense_Mutation p.A295V 0.09 tolerated(0.36) probably_damaging(0.999) TCGA-EM-A22J-01 12 24985718 24985719 - TC BCAT1 Frame_Shift_Ins p.M340Rfs*40 0.53 TCGA-EM-A22J-01 12 56537713 56537713 T G ESYT1 3'UTR 0.36 TCGA-EM-A22J-01 12 9092053 9092053 T C PHC1 Nonstop_Mutation p.*1005Qext*62 0.12 TCGA-EM-A22J-01 13 113487317 113487317 G C ATP11A Silent p.A513A 0.09 TCGA-EM-A22J-01 13 49772502 49772502 C T FNDC3A Nonsense_Mutation p.R927* 0.09 TCGA-EM-A22J-01 15 81517814 81517814 T C IL16 Missense_Mutation p.L25P 0.37 deleterious(0) probably_damaging(0.999) TCGA-EM-A22J-01 17 41063578 41063578 G A G6PC 3'UTR 0.57 TCGA-EM-A22J-01 17 47780295 47780295 T C SLC35B1 Missense_Mutation p.I281V 0.19 tolerated(0.79) benign(0.233) TCGA-EM-A22J-01 17 77709071 77709071 C A ENPP7 Missense_Mutation p.P210Q 0.10 tolerated(0.69) benign(0.062) TCGA-EM-A22J-01 19 19446536 19446536 T C MAU2 Missense_Mutation p.S96P 0.25 tolerated(0.07) benign(0.056) TCGA-EM-A22J-01 19 56373368 56373368 G A NLRP4 Missense_Mutation p.V677I 0.34 tolerated(0.1) benign(0.1) TCGA-EM-A22J-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.40 tolerated(0.06) benign(0.006) TCGA-EM-A22J-01 20 61524262 61524262 G A DIDO1 Nonsense_Mutation p.R1052* 0.25 TCGA-EM-A22J-01 2 242439602 242439602 T C STK25 Missense_Mutation p.H138R 0.07 deleterious(0) probably_damaging(1) TCGA-EM-A22J-01 4 100047817 100047817 T A ADH4 Missense_Mutation p.D349V 0.25 deleterious(0) possibly_damaging(0.755) TCGA-EM-A22J-01 5 127638774 127638774 A G FBN2 Silent p.D1936D 0.41 TCGA-EM-A22J-01 5 140516258 140516258 C T PCDHB5 Silent p.A414A 0.36 TCGA-EM-A22J-01 7 100880845 100880845 T C CLDN15 Silent p.E6E 0.09 TCGA-EM-A22K-01 10 111642324 111642324 C T XPNPEP1 Missense_Mutation p.E303K 0.30 tolerated(0.46) benign(0.005) TCGA-EM-A22K-01 11 533875 533875 G T HRAS Missense_Mutation p.Q61K 0.37 deleterious(0.02) benign(0.046) TCGA-EM-A22K-01 13 42874704 42874704 A T AKAP11 Nonsense_Mutation p.K608* 0.10 TCGA-EM-A22K-01 14 55637441 55637441 C G DLGAP5 Missense_Mutation p.E456Q 0.38 tolerated(0.08) benign(0.349) TCGA-EM-A22K-01 15 40308702 40308702 G A EIF2AK4 Splice_Site p.X1254_splice 0.05 TCGA-EM-A22K-01 16 69729160 69729160 A G NFAT5 Silent p.Q1512Q 0.15 TCGA-EM-A22K-01 19 48863423 48863423 G C TMEM143 Missense_Mutation p.S92W 0.05 tolerated(0.06) unknown(0) TCGA-EM-A22K-01 19 58361288 58361288 T G ZNF587 5'UTR 0.18 TCGA-EM-A22K-01 1 157069336 157069336 G T ETV3L 5'UTR 0.30 TCGA-EM-A22K-01 20 9498782 9498782 G T LAMP5 Missense_Mutation p.A191S 0.35 tolerated(0.51) benign(0.016) TCGA-EM-A22K-01 2 197521549 197521549 T A CCDC150 Silent p.T123T 0.08 TCGA-EM-A22K-01 4 80992749 80992749 T C ANTXR2 Missense_Mutation p.E71G 0.49 deleterious(0.05) benign(0.012) TCGA-EM-A22K-01 6 155458519 155458519 T A TIAM2 Missense_Mutation p.M468K 0.03 tolerated(0.16) benign(0.199) TCGA-EM-A22L-01 11 47436290 47436290 C T SLC39A13 Intron 0.32 TCGA-EM-A22L-01 11 56000018 56000018 C T OR5T2 Missense_Mutation p.R215H 0.06 tolerated(1) benign(0) TCGA-EM-A22L-01 12 6105204 6105204 G T VWF Missense_Mutation p.H2009Q 0.41 tolerated(0.05) possibly_damaging(0.85) TCGA-EM-A22L-01 13 78176241 78176241 C G SCEL Missense_Mutation p.T320S 0.15 tolerated(0.16) benign(0.056) TCGA-EM-A22L-01 17 26882008 26882008 A G PIGS Missense_Mutation p.L418P 0.05 deleterious(0) benign(0.309) TCGA-EM-A22L-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.37 deleterious(0.01) benign(0.045) TCGA-EM-A22L-01 1 186122946 186122946 T C HMCN1 Missense_Mutation p.F5028S 0.31 probably_damaging(0.984) TCGA-EM-A22L-01 3 151012084 151012084 A G GPR87 Missense_Mutation p.M317T 0.47 tolerated(0.05) probably_damaging(0.972) TCGA-EM-A22L-01 3 93624630 93624630 T A PROS1 Missense_Mutation p.K200I 0.35 tolerated(0.2) benign(0.027) TCGA-EM-A22L-01 7 99796515 99796515 C T STAG3 Missense_Mutation p.R468C 0.34 deleterious(0) benign(0.091) TCGA-EM-A22M-01 11 102991301 102991301 A G DYNC2H1 Silent p.P375P 0.15 TCGA-EM-A22M-01 11 113215033 113215033 C T TTC12 Missense_Mutation p.A342V 0.34 tolerated(0.24) benign(0.002) TCGA-EM-A22M-01 11 119547852 119547852 C T PVRL1 Missense_Mutation p.A271T 0.08 deleterious(0) possibly_damaging(0.802) TCGA-EM-A22M-01 11 65547117 65547117 G A AP5B1 Missense_Mutation p.P283S 0.23 tolerated(0.06) benign(0.046) TCGA-EM-A22M-01 11 67395569 67395569 C G NUDT8 Missense_Mutation p.E187Q 0.19 deleterious(0.03) possibly_damaging(0.493) TCGA-EM-A22M-01 12 7882132 7882132 A G CLEC4C 3'UTR 0.15 TCGA-EM-A22M-01 13 108518740 108518740 C T FAM155A Missense_Mutation p.D69N 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-EM-A22M-01 18 76757214 76757214 T C SALL3 Silent p.T1265T 0.03 TCGA-EM-A22M-01 19 21990727 21990727 T G ZNF43 Missense_Mutation p.K704N 0.14 deleterious(0.03) benign(0.402) TCGA-EM-A22M-01 19 44679858 44679858 A G ZNF226 Missense_Mutation p.Y148C 0.09 tolerated(0.22) benign(0) TCGA-EM-A22M-01 19 9452862 9452862 A G ZNF559 Silent p.A245A 0.17 TCGA-EM-A22M-01 1 101354378 101354378 C A EXTL2 5'UTR 0.12 TCGA-EM-A22M-01 1 114523260 114523260 C T OLFML3 Intron 0.26 TCGA-EM-A22M-01 1 117624468 117624468 G A TTF2 Missense_Mutation p.G601E 0.34 deleterious(0) probably_damaging(0.994) TCGA-EM-A22M-01 1 237015822 237015822 A T MTR Missense_Mutation p.E566V 0.09 deleterious(0.01) possibly_damaging(0.598) TCGA-EM-A22M-01 4 42895497 42895497 G - GRXCR1 Frame_Shift_Del p.E72Rfs*12 0.17 TCGA-EM-A22M-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-EM-A22N-01 11 56756448 56756448 G T OR5AK2 Missense_Mutation p.Q20H 0.12 tolerated(0.24) probably_damaging(0.928) TCGA-EM-A22N-01 11 56756449 56756449 C T OR5AK2 Missense_Mutation p.H21Y 0.12 tolerated(0.61) benign(0.001) TCGA-EM-A22N-01 12 111885971 111885971 G T SH2B3 Silent p.S531S 0.05 TCGA-EM-A22N-01 12 31440669 31440669 A C FAM60A Silent p.P135P 0.13 TCGA-EM-A22N-01 16 58701385 58701385 C A SLC38A7 Missense_Mutation p.W431C 0.20 tolerated(0.41) probably_damaging(0.939) TCGA-EM-A22N-01 19 13476148 13476148 C T CACNA1A Missense_Mutation p.C256Y 0.19 probably_damaging(0.919) TCGA-EM-A22N-01 1 155156425 155156425 C T TRIM46 Missense_Mutation p.T680I 0.25 tolerated(0.13) benign(0.013) TCGA-EM-A22N-01 2 189866147 189866147 C T COL3A1 Missense_Mutation p.P770S 0.08 unknown(0) TCGA-EM-A22N-01 5 61643970 61643970 A T KIF2A Silent p.S85S 0.06 TCGA-EM-A22N-01 9 77692099 77692099 T C NMRK1 Missense_Mutation p.K49E 0.05 tolerated(1) benign(0) TCGA-EM-A22N-01 9 84533339 84533339 A G SPATA31D5P RNA 0.22 TCGA-EM-A22O-01 10 35929590 35929590 C A FZD8 Missense_Mutation p.Q256H 0.51 tolerated(0.1) benign(0.076) TCGA-EM-A22O-01 10 73537998 73537998 A G C10orf54 5'Flank 0.07 TCGA-EM-A22O-01 11 108190727 108190727 C G ATM Missense_Mutation p.L2132V 0.36 tolerated(0.18) benign(0.239) TCGA-EM-A22O-01 11 3023813 3023813 C T CARS Silent p.R745R 0.16 TCGA-EM-A22O-01 12 111893961 111893961 T A ATXN2 Missense_Mutation p.T1206S 0.43 probably_damaging(0.995) TCGA-EM-A22O-01 12 1949958 1949958 G A CACNA2D4 Missense_Mutation p.T833M 0.47 deleterious(0.02) benign(0.109) TCGA-EM-A22O-01 12 76444373 76444373 G A NAP1L1 Missense_Mutation p.R333C 0.44 deleterious(0.02) possibly_damaging(0.455) TCGA-EM-A22O-01 14 19378084 19378084 G T OR11H12 Missense_Mutation p.W164L 0.12 deleterious(0.01) probably_damaging(1) TCGA-EM-A22O-01 14 45693947 45693947 T - MIS18BP1 Frame_Shift_Del p.T615Qfs*12 0.34 TCGA-EM-A22O-01 15 43815344 43815344 C G MAP1A Missense_Mutation p.P558R 0.52 benign(0.377) TCGA-EM-A22O-01 15 55664157 55664157 A G CCPG1 Silent p.A180A 0.06 TCGA-EM-A22O-01 16 20975172 20975172 C T DNAH3 Missense_Mutation p.R3345H 0.39 deleterious(0.02) probably_damaging(1) TCGA-EM-A22O-01 16 25182127 25182127 G A LCMT1 Splice_Site p.X295_splice 0.37 TCGA-EM-A22O-01 18 43519707 43519707 T C EPG5 Missense_Mutation p.Y653C 0.26 deleterious(0.04) probably_damaging(0.993) TCGA-EM-A22O-01 18 56587101 56587101 A T ZNF532 Missense_Mutation p.N528Y 0.08 deleterious(0) probably_damaging(0.971) TCGA-EM-A22O-01 18 64197108 64197108 C T CDH19 Missense_Mutation p.V478I 0.50 tolerated(0.11) benign(0.252) TCGA-EM-A22O-01 19 16038119 16038119 T C CYP4F11 Missense_Mutation p.K143R 0.47 deleterious(0.03) possibly_damaging(0.818) TCGA-EM-A22O-01 19 56166505 56166505 A G U2AF2 Missense_Mutation p.N12S 0.17 tolerated_low_confidence(0.5) benign(0) TCGA-EM-A22O-01 19 56467090 56467090 G A NLRP8 Missense_Mutation p.G556R 0.46 tolerated(0.19) probably_damaging(0.928) TCGA-EM-A22O-01 1 110033986 110033986 C G ATXN7L2 Missense_Mutation p.L601V 0.39 tolerated_low_confidence(0.28) possibly_damaging(0.55) TCGA-EM-A22O-01 1 26507021 26507021 C G CNKSR1 Missense_Mutation p.Q44E 0.07 tolerated(0.06) benign(0.03) TCGA-EM-A22O-01 1 66098867 66098868 - A LEPR Intron 0.21 TCGA-EM-A22O-01 20 46290580 46290580 T A SULF2 Missense_Mutation p.M811L 0.45 tolerated(0.08) possibly_damaging(0.867) TCGA-EM-A22O-01 22 29445437 29445437 A G ZNRF3 Missense_Mutation p.H423R 0.37 deleterious(0.01) benign(0.048) TCGA-EM-A22O-01 2 159519930 159519930 C T PKP4 Silent p.L850L 0.40 TCGA-EM-A22O-01 2 202744823 202744823 C T CDK15 Silent p.S377S 0.09 TCGA-EM-A22O-01 2 33036256 33036256 G A TTC27 Missense_Mutation p.G722R 0.45 deleterious(0.02) possibly_damaging(0.866) TCGA-EM-A22O-01 3 180381672 180381672 C G CCDC39 Missense_Mutation p.E65Q 0.24 deleterious(0) probably_damaging(0.95) TCGA-EM-A22O-01 4 169374416 169374416 T C DDX60L Silent p.L285L 0.41 TCGA-EM-A22O-01 4 76886950 76886950 A G SDAD1 Silent p.A357A 0.26 TCGA-EM-A22O-01 4 83350530 83350530 G A HNRNPDL Missense_Mutation p.T105I 0.24 deleterious_low_confidence(0.05) possibly_damaging(0.507) TCGA-EM-A22O-01 4 84377209 84377209 G A MRPS18C 5'UTR 0.46 TCGA-EM-A22O-01 5 122881412 122881412 A G CSNK1G3 Missense_Mutation p.S19G 0.10 tolerated_low_confidence(0.69) benign(0) TCGA-EM-A22O-01 7 100679804 100679804 G A MUC17 Missense_Mutation p.A1703T 0.08 probably_damaging(0.986) TCGA-EM-A22O-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-EM-A22O-01 7 150648922 150648922 A G KCNH2 Missense_Mutation p.L520P 0.07 deleterious(0) probably_damaging(0.998) TCGA-EM-A22O-01 8 101719214 101719214 T C PABPC1 Missense_Mutation p.M450V 0.06 tolerated(0.43) benign(0.001) TCGA-EM-A22O-01 9 107510105 107510105 C T NIPSNAP3A Missense_Mutation p.A11V 0.26 tolerated(0.21) probably_damaging(0.939) TCGA-EM-A22P-01 11 64679415 64679415 G A ATG2A Missense_Mutation p.A376V 0.22 deleterious(0.01) benign(0.066) TCGA-EM-A22P-01 12 64891007 64891007 G A TBK1 Missense_Mutation p.E643K 0.06 deleterious(0.01) possibly_damaging(0.64) TCGA-EM-A22P-01 13 21296003 21296003 G A IL17D Silent p.P173P 0.05 TCGA-EM-A22P-01 14 23564531 23564532 - C C14orf119 5'UTR 0.22 TCGA-EM-A22P-01 18 24445624 24445624 C T AQP4 Nonsense_Mutation p.W10* 0.22 TCGA-EM-A22P-01 19 9090520 9090520 G T MUC16 Missense_Mutation p.T432N 0.22 unknown(0) TCGA-EM-A22P-01 1 178846740 178846740 A G RALGPS2 Missense_Mutation p.I239V 0.19 deleterious(0.04) possibly_damaging(0.549) TCGA-EM-A22P-01 1 22033083 22033083 C G USP48 Splice_Site p.X697_splice 0.28 TCGA-EM-A22P-01 1 43770796 43770796 G A TIE1 Silent p.A111A 0.20 TCGA-EM-A22P-01 1 67592860 67592860 T C C1orf141 Missense_Mutation p.R22G 0.20 tolerated(0.07) probably_damaging(0.943) TCGA-EM-A22P-01 1 94512588 94512588 T C ABCA4 Silent p.V935V 0.23 TCGA-EM-A22P-01 2 55522862 55522862 C T CCDC88A Missense_Mutation p.V1807M 0.23 deleterious(0.02) probably_damaging(1) TCGA-EM-A22P-01 4 48385799 48385799 C T SLAIN2 Missense_Mutation p.A453V 0.14 deleterious(0.05) benign(0.007) TCGA-EM-A22P-01 6 131949253 131949253 G C MED23 5'UTR 0.08 TCGA-EM-A22P-01 6 26199951 26199951 C T HIST1H2BF Silent p.I55I 0.21 TCGA-EM-A22P-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-EM-A22P-01 7 44607781 44607781 C T DDX56 Silent p.R475R 0.07 TCGA-EM-A22P-01 X 152139069 152139069 A T ZNF185 Missense_Mutation p.Y717F 0.09 deleterious(0) probably_damaging(0.999) TCGA-EM-A22P-01 X 37312552 37312552 G A PRRG1 Missense_Mutation p.R112K 0.35 deleterious(0.02) benign(0.082) TCGA-EM-A22Q-01 10 97050722 97050722 G C PDLIM1 5'UTR 0.54 TCGA-EM-A22Q-01 11 114271421 114271421 C T RBM7 Missense_Mutation p.R10C 0.29 deleterious(0.02) benign(0.004) TCGA-EM-A22Q-01 11 117079685 117079685 C T PCSK7 Missense_Mutation p.G540D 0.18 deleterious(0) probably_damaging(1) TCGA-EM-A22Q-01 11 18956323 18956323 T A MRGPRX1 Silent p.P3P 0.34 TCGA-EM-A22Q-01 14 72202102 72202102 A G SIPA1L1 Missense_Mutation p.Y1727C 0.10 tolerated(0.17) probably_damaging(0.998) TCGA-EM-A22Q-01 15 100340438 100340438 C T DNM1P46 RNA 0.33 TCGA-EM-A22Q-01 19 52817523 52817523 G T ZNF480 Missense_Mutation p.V64F 0.29 deleterious(0) benign(0.062) TCGA-EM-A22Q-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.35 deleterious(0.01) benign(0.045) TCGA-EM-A22Q-01 1 97235421 97235422 - A PTBP2 Frame_Shift_Ins p.N95Kfs*18 0.23 TCGA-EM-A22Q-01 2 113332950 113332950 C T POLR1B Nonsense_Mutation p.R1018* 0.34 TCGA-EM-A22Q-01 4 79360116 79360116 C G FRAS1 Silent p.V1809V 0.35 TCGA-EM-A22Q-01 7 100680017 100680017 A G MUC17 Missense_Mutation p.I1774V 0.41 benign(0.015) TCGA-EM-A2CJ-01 11 2433483 2433483 C G TRPM5 Missense_Mutation p.G786R 0.31 deleterious(0) probably_damaging(0.951) TCGA-EM-A2CJ-01 12 29509405 29509405 T C ERGIC2 Missense_Mutation p.D161G 0.05 tolerated(0.26) benign(0.012) TCGA-EM-A2CJ-01 15 66792426 66792426 G A RPL4 Missense_Mutation p.R336C 0.14 deleterious(0.03) probably_damaging(0.969) TCGA-EM-A2CJ-01 19 1627410 1627410 C T TCF3 Missense_Mutation p.R105Q 0.39 tolerated(0.1) possibly_damaging(0.728) TCGA-EM-A2CJ-01 19 9049003 9049003 T A MUC16 Silent p.G10876G 0.11 TCGA-EM-A2CJ-01 1 100181191 100181191 G T FRRS1 Missense_Mutation p.T425N 0.29 deleterious(0) probably_damaging(0.984) TCGA-EM-A2CJ-01 1 158990261 158990261 G A IFI16 Missense_Mutation p.R368Q 0.47 tolerated(1) possibly_damaging(0.887) TCGA-EM-A2CJ-01 1 207143484 207143484 C A FCAMR 5'UTR 0.38 TCGA-EM-A2CJ-01 1 222825616 222825616 A C MIA3 Missense_Mutation p.K1343T 0.06 deleterious(0) probably_damaging(0.952) TCGA-EM-A2CJ-01 1 3677920 3677920 G A CCDC27 Missense_Mutation p.E263K 0.10 tolerated(0.08) possibly_damaging(0.801) TCGA-EM-A2CJ-01 3 128986759 128986788 CACCTTGTGTCCTGGCTGCAGGTGTGTGAT - COPG1 Splice_Site p.X515_splice 0.29 TCGA-EM-A2CJ-01 6 43400340 43400340 G T ABCC10 Missense_Mutation p.D208Y 0.11 deleterious(0.02) benign(0.069) TCGA-EM-A2CJ-01 9 130487098 130487098 T - TTC16 Frame_Shift_Del p.L394Rfs*86 0.52 TCGA-EM-A2CK-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.43 tolerated(0.07) benign(0.069) TCGA-EM-A2CK-01 14 39605719 39605719 A T GEMIN2 3'UTR 0.32 TCGA-EM-A2CK-01 19 34262953 34262953 G A CHST8 Missense_Mutation p.R87H 0.31 tolerated(0.2) benign(0.054) TCGA-EM-A2CK-01 19 36430922 36430922 G A LRFN3 Missense_Mutation p.A199T 0.33 tolerated(1) benign(0.075) TCGA-EM-A2CK-01 1 38463709 38463709 G C FHL3 Missense_Mutation p.P143A 0.38 deleterious(0.03) probably_damaging(1) TCGA-EM-A2CK-01 1 89733152 89733152 A C GBP5 Missense_Mutation p.F126V 0.06 deleterious(0.01) possibly_damaging(0.538) TCGA-EM-A2CK-01 2 182852550 182852550 C A PPP1R1C Silent p.G29G 0.41 TCGA-EM-A2CK-01 6 29639214 29639214 C G MOG Missense_Mutation p.A249G 0.38 tolerated_low_confidence(0.22) unknown(0) TCGA-EM-A2CK-01 8 17830011 17830011 T G PCM1 Missense_Mutation p.F1253C 0.06 deleterious(0.02) probably_damaging(0.983) TCGA-EM-A2CK-01 9 131670993 131670993 C T LRRC8A Missense_Mutation p.T517I 0.26 deleterious(0.01) benign(0.043) TCGA-EM-A2CK-01 X 48826423 48826423 G A KCND1 Missense_Mutation p.R86C 0.09 deleterious(0.02) probably_damaging(0.991) TCGA-EM-A2CL-01 17 56350266 56350266 G - MPO Frame_Shift_Del p.I546Sfs*12 0.39 TCGA-EM-A2CL-01 1 100327958 100327958 C T AGL Missense_Mutation p.L147F 0.51 deleterious(0.01) possibly_damaging(0.816) TCGA-EM-A2CL-01 1 248263034 248263034 C T OR2L13 Silent p.Y119Y 0.18 TCGA-EM-A2CL-01 1 74492567 74492567 T C LRRIQ3 Missense_Mutation p.D602G 0.33 deleterious(0.01) possibly_damaging(0.448) TCGA-EM-A2CL-01 20 61512289 61512289 C G DIDO1 Silent p.P1673P 0.09 TCGA-EM-A2CL-01 6 89967652 89967652 C G GABRR2 Missense_Mutation p.G379R 0.28 deleterious(0.03) probably_damaging(0.983) TCGA-EM-A2CL-01 X 20156732 20156732 C G EIF1AX Missense_Mutation p.G9R 0.81 tolerated(0.09) unknown(0) TCGA-EM-A2CM-01 10 51769900 51769900 G A AGAP6 Missense_Mutation p.C672Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-EM-A2CM-01 10 863763 863763 T C LARP4B Missense_Mutation p.S533G 0.13 deleterious(0.01) benign(0.297) TCGA-EM-A2CM-01 11 122659945 122659945 C T UBASH3B Silent p.T303T 0.13 TCGA-EM-A2CM-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.47 tolerated(0.07) benign(0.069) TCGA-EM-A2CM-01 11 62344744 62344744 G C TUT1 Missense_Mutation p.R432G 0.54 deleterious(0) possibly_damaging(0.682) TCGA-EM-A2CM-01 12 66639013 66639013 C T IRAK3 Missense_Mutation p.R429W 0.45 deleterious(0) probably_damaging(0.997) TCGA-EM-A2CM-01 12 93793245 93793245 A C NUDT4 3'UTR 0.37 TCGA-EM-A2CM-01 13 61986868 61986868 G T PCDH20 Missense_Mutation p.T455N 0.47 deleterious(0) probably_damaging(0.968) TCGA-EM-A2CM-01 14 106552433 106552433 C A IGHV3-9 Missense_Mutation p.G69V 0.11 tolerated_low_confidence(0.5) benign(0.003) TCGA-EM-A2CM-01 14 89343874 89343874 A G TTC8 3'UTR 0.40 TCGA-EM-A2CM-01 16 70698292 70698292 A C MTSS1L Missense_Mutation p.F511C 0.61 deleterious(0.03) possibly_damaging(0.778) TCGA-EM-A2CM-01 17 19835124 19835124 C A AKAP10 Silent p.A545A 0.30 TCGA-EM-A2CM-01 17 28599594 28599594 A T BLMH Missense_Mutation p.L338H 0.46 deleterious(0) probably_damaging(0.931) TCGA-EM-A2CM-01 19 12692413 12692413 C A ZNF490 Missense_Mutation p.S159I 0.41 deleterious(0.04) benign(0.016) TCGA-EM-A2CM-01 19 44739570 44739570 C T ZNF227 Silent p.C329C 0.36 TCGA-EM-A2CM-01 19 52004780 52004780 C G SIGLEC12 Missense_Mutation p.V70L 0.47 tolerated(0.56) benign(0.001) TCGA-EM-A2CM-01 1 201182494 201182494 G T IGFN1 Missense_Mutation p.A2825S 0.42 possibly_damaging(0.657) TCGA-EM-A2CM-01 1 33415316 33415316 C T RNF19B Missense_Mutation p.G232D 0.56 deleterious(0.02) probably_damaging(1) TCGA-EM-A2CM-01 1 38041193 38041193 C T GNL2 Intron 0.41 TCGA-EM-A2CM-01 1 53377423 53377423 T C ECHDC2 Missense_Mutation p.N54S 0.51 deleterious(0) possibly_damaging(0.861) TCGA-EM-A2CM-01 2 227661796 227661796 C A IRS1 Missense_Mutation p.E553D 0.48 deleterious(0.03) probably_damaging(0.97) TCGA-EM-A2CM-01 3 132319842 132319842 C T ACKR4 Nonsense_Mutation p.Q201* 0.22 TCGA-EM-A2CM-01 4 119718931 119718931 T C SEC24D Silent p.T316T 0.20 TCGA-EM-A2CM-01 5 149669141 149669141 G A CAMK2A Silent p.F16F 0.52 TCGA-EM-A2CM-01 5 76932745 76932745 G A OTP Silent p.L116L 0.48 TCGA-EM-A2CM-01 6 151686819 151686819 T C ZBTB2 Missense_Mutation p.N461S 0.45 tolerated_low_confidence(0.37) benign(0.002) TCGA-EM-A2CM-01 6 27799285 27799285 G A HIST1H4K Silent p.G7G 0.30 TCGA-EM-A2CM-01 7 51096572 51096572 T C COBL Missense_Mutation p.S741G 0.54 tolerated(0.25) benign(0.008) TCGA-EM-A2CM-01 8 133900509 133900510 - T TG Frame_Shift_Ins p.I821Yfs*6 0.42 TCGA-EM-A2CM-01 8 41546095 41546095 C T ANK1 Missense_Mutation p.E1414K 0.50 deleterious(0.05) benign(0.146) TCGA-EM-A2CM-01 9 77257585 77257585 C T RORB Missense_Mutation p.S164F 0.41 deleterious(0) benign(0.078) TCGA-EM-A2CN-01 10 85972879 85972879 C T CDHR1 Silent p.N605N 0.49 TCGA-EM-A2CN-01 11 109294829 109294829 C T C11orf87 Missense_Mutation p.P157L 0.44 tolerated_low_confidence(0.1) benign(0.002) TCGA-EM-A2CN-01 11 30033056 30033056 G T KCNA4 Nonsense_Mutation p.C390* 0.38 TCGA-EM-A2CN-01 11 92577600 92577600 C T FAT3 Silent p.S3689S 0.41 TCGA-EM-A2CN-01 14 35761712 35761712 C A PSMA6 Missense_Mutation p.D10E 0.07 deleterious(0.01) possibly_damaging(0.843) TCGA-EM-A2CN-01 15 72457708 72457708 T G GRAMD2 Missense_Mutation p.E196A 0.05 deleterious(0.05) possibly_damaging(0.698) TCGA-EM-A2CN-01 16 2871699 2871699 C T PRSS21 3'UTR 0.64 TCGA-EM-A2CN-01 16 4164144 4164144 T G ADCY9 Missense_Mutation p.K434Q 0.04 tolerated(0.21) benign(0.035) TCGA-EM-A2CN-01 16 90103675 90103675 C T GAS8 Silent p.H264H 0.15 TCGA-EM-A2CN-01 17 4167266 4167266 G C ANKFY1 5'Flank 0.41 TCGA-EM-A2CN-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.40 tolerated(0.06) benign(0.006) TCGA-EM-A2CN-01 1 149785212 149785212 G A HIST2H3D Missense_Mutation p.R9C 0.40 deleterious_low_confidence(0.02) benign(0) TCGA-EM-A2CN-01 22 19969230 19969230 G A ARVCF Missense_Mutation p.R134W 0.39 deleterious(0) possibly_damaging(0.77) TCGA-EM-A2CN-01 22 30734812 30734812 G A SF3A1 Missense_Mutation p.A570V 0.48 tolerated(0.33) benign(0) TCGA-EM-A2CN-01 2 242430539 242430550 TGGCGGTGACAC G FARP2 Frame_Shift_Del p.S856Rfs*30 0.36 TCGA-EM-A2CN-01 3 183397022 183397022 A G KLHL24 Missense_Mutation p.Y584C 0.46 tolerated(0.07) probably_damaging(0.971) TCGA-EM-A2CN-01 6 13307860 13307860 C T TBC1D7 Missense_Mutation p.G213R 0.41 deleterious(0) probably_damaging(0.999) TCGA-EM-A2CN-01 6 31627090 31627090 C A C6orf47 Missense_Mutation p.R212L 0.56 deleterious(0) possibly_damaging(0.826) TCGA-EM-A2CN-01 6 86324743 86324743 C T SYNCRIP Missense_Mutation p.V535I 0.18 tolerated(0.24) unknown(0) TCGA-EM-A2CN-01 9 133917103 133917103 G T LAMC3 Nonsense_Mutation p.E455* 0.22 TCGA-EM-A2CN-01 9 27359236 27359236 T C MOB3B Splice_Site p.X140_splice 0.45 TCGA-EM-A2CO-01 10 96361328 96361328 A G HELLS Missense_Mutation p.I822M 0.14 deleterious(0.01) benign(0.438) TCGA-EM-A2CO-01 11 111942472 111942472 T C PIH1D2 Missense_Mutation p.E63G 0.31 tolerated(0.07) benign(0.071) TCGA-EM-A2CO-01 11 65144072 65144072 T C SLC25A45 Missense_Mutation p.I225V 0.48 tolerated(0.79) benign(0.012) TCGA-EM-A2CO-01 13 113854783 113854783 C A PCID2 Missense_Mutation p.L28F 0.08 tolerated(0.26) benign(0.238) TCGA-EM-A2CO-01 16 354424 354424 C T AXIN1 Silent p.P378P 0.07 TCGA-EM-A2CO-01 17 33521307 33521307 T C SLC35G3 Missense_Mutation p.Y7C 0.06 deleterious(0.01) possibly_damaging(0.907) TCGA-EM-A2CO-01 19 48967816 48967816 G A KCNJ14 Missense_Mutation p.E365K 0.07 deleterious(0.01) probably_damaging(0.954) TCGA-EM-A2CO-01 19 49920492 49920492 G A CCDC155 Missense_Mutation p.G506S 0.30 tolerated_low_confidence(0.27) benign(0.039) TCGA-EM-A2CO-01 1 101188796 101188796 G T VCAM1 Missense_Mutation p.E187D 0.56 deleterious(0.03) benign(0.337) TCGA-EM-A2CO-01 1 231696959 231696959 A G TSNAX Silent p.Q151Q 0.28 TCGA-EM-A2CO-01 1 41098767 41098767 C T RIMS3 Missense_Mutation p.R149Q 0.53 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-EM-A2CO-01 1 94643557 94643560 GTGA - ARHGAP29 Frame_Shift_Del p.S882Rfs*17 0.21 TCGA-EM-A2CO-01 20 10023795 10023795 G A ANKEF1 Silent p.P124P 0.36 TCGA-EM-A2CO-01 22 40417409 40417409 G A FAM83F Missense_Mutation p.D299N 0.10 tolerated(1) benign(0.002) TCGA-EM-A2CO-01 2 152390825 152390825 G A NEB Intron 0.06 TCGA-EM-A2CO-01 3 186917353 186917353 G T RTP1 Missense_Mutation p.W96L 0.49 tolerated(0.5) benign(0.03) TCGA-EM-A2CP-01 11 76371702 76371702 C T LRRC32 Missense_Mutation p.R312H 0.12 tolerated(0.56) benign(0) TCGA-EM-A2CP-01 X 150869382 150869382 C T PRRG3 Silent p.P191P 0.05 TCGA-EM-A2CP-01 X 48819837 48819837 A G KCND1 3'UTR 0.18 TCGA-EM-A2CQ-01 12 25398284 25398284 C A KRAS Missense_Mutation p.G12V 0.35 deleterious(0) possibly_damaging(0.479) TCGA-EM-A2CQ-01 14 106405640 106405640 C T IGHV6-1 Missense_Mutation p.E112K 0.29 deleterious(0.04) benign(0.154) TCGA-EM-A2CQ-01 3 3189629 3189629 C T TRNT1 Silent p.L366L 0.26 TCGA-EM-A2CQ-01 4 71655351 71655351 G A RUFY3 Intron 0.37 TCGA-EM-A2CQ-01 6 32037914 32037914 G A TNXB Silent p.D1756D 0.26 TCGA-EM-A2CQ-01 7 141758106 141758106 T C MGAM Missense_Mutation p.M1266T 0.29 deleterious(0) possibly_damaging(0.608) TCGA-EM-A2CQ-01 7 44578614 44578614 G T NPC1L1 Missense_Mutation p.A461E 0.14 tolerated(1) benign(0.001) TCGA-EM-A2CQ-01 X 129200994 129200994 G T ELF4 Missense_Mutation p.T565N 0.27 tolerated(0.24) probably_damaging(0.994) TCGA-EM-A2CQ-01 X 77912455 77912455 C T ZCCHC5 3'UTR 0.27 TCGA-EM-A2CR-01 12 11546273 11546273 G A PRB2 Missense_Mutation p.P247S 0.35 tolerated(0.27) unknown(0) TCGA-EM-A2CR-01 12 14924031 14924031 G A HIST4H4 5'UTR 0.29 TCGA-EM-A2CR-01 16 15164041 15164041 T C RRN3 Missense_Mutation p.T444A 0.23 tolerated(0.59) benign(0.096) TCGA-EM-A2CR-01 17 27061954 27061954 C T NEK8 Missense_Mutation p.R140C 0.37 tolerated(0.07) benign(0.081) TCGA-EM-A2CR-01 17 72725494 72725494 A - RAB37 Frame_Shift_Del p.I58Sfs*8 0.31 TCGA-EM-A2CR-01 19 9084433 9084433 G T MUC16 Missense_Mutation p.T2461K 0.25 unknown(0) TCGA-EM-A2CR-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.37 tolerated(0.06) benign(0.006) TCGA-EM-A2CR-01 20 1551539 1551539 C T SIRPB1 Silent p.V332V 0.37 TCGA-EM-A2CR-01 22 20079439 20079439 G A DGCR8 Missense_Mutation p.E518K 0.75 deleterious(0) probably_damaging(1) TCGA-EM-A2CR-01 4 40351126 40351126 T C CHRNA9 Missense_Mutation p.I198T 0.03 deleterious(0) benign(0.014) TCGA-EM-A2CR-01 4 78532142 78532142 A T CXCL13 Missense_Mutation p.K93N 0.37 tolerated(0.08) benign(0.141) TCGA-EM-A2CR-01 X 141291129 141291129 G A MAGEC2 Silent p.T215T 0.38 TCGA-EM-A2CS-01 11 12785928 12785928 A G TEAD1 Missense_Mutation p.Y50C 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-EM-A2CS-01 15 73044692 73044692 G A ADPGK Missense_Mutation p.P494L 0.29 deleterious_low_confidence(0) benign(0.35) TCGA-EM-A2CS-01 16 14761536 14761536 C T BFAR Missense_Mutation p.T402M 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-EM-A2CS-01 17 72340946 72340946 C T KIF19 Missense_Mutation p.P210L 0.12 deleterious(0.01) probably_damaging(0.929) TCGA-EM-A2CS-01 1 153750999 153750999 C G SLC27A3 Missense_Mutation p.P520A 0.08 tolerated(0.9) benign(0.002) TCGA-EM-A2CS-01 2 108488523 108488523 A G RGPD4 Missense_Mutation p.K1355E 0.19 tolerated(0.52) benign(0.02) TCGA-EM-A2CS-01 2 99767210 99767210 T C C2ORF15 Silent p.T97T 0.09 TCGA-EM-A2CS-01 3 113374352 113374352 T C KIAA2018 Silent p.L2059L 0.04 TCGA-EM-A2CS-01 3 185327074 185327074 T C SENP2 Silent p.L220L 0.40 TCGA-EM-A2CS-01 4 998247 998247 C T IDUA 3'UTR 0.29 TCGA-EM-A2CS-01 5 139494097 139494098 - A PURA Frame_Shift_Ins p.R111Qfs*90 0.35 TCGA-EM-A2CS-01 6 32163439 32163439 T A NOTCH4 Silent p.I1929I 0.11 TCGA-EM-A2CS-01 7 100244387 100244387 A G ACTL6B Missense_Mutation p.I335T 0.09 deleterious(0.02) possibly_damaging(0.833) TCGA-EM-A2CS-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EM-A2CS-01 X 18183126 18183126 C T BEND2 3'UTR 0.06 TCGA-EM-A2CT-01 14 95556886 95556886 T G DICER1 Missense_Mutation p.R1906S 0.36 deleterious(0) probably_damaging(0.974) TCGA-EM-A2CT-01 16 11348688 11348688 G C SOCS1 3'UTR 0.13 TCGA-EM-A2CT-01 17 39279800 39279800 C T KRTAP4-12 Missense_Mutation p.R192H 0.24 tolerated(0.06) unknown(0) TCGA-EM-A2CT-01 18 54603138 54603138 T C WDR7 Splice_Site p.X1277_splice 0.10 TCGA-EM-A2CT-01 19 15133944 15133944 C T CCDC105 3'UTR 0.29 TCGA-EM-A2CT-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.34 tolerated(0.06) benign(0.006) TCGA-EM-A2CT-01 4 2952107 2952107 A C NOP14 Intron 0.22 TCGA-EM-A2CU-01 11 55944860 55944860 T C OR5J2 Missense_Mutation p.I256T 0.06 tolerated(0.32) benign(0.026) TCGA-EM-A2CU-01 12 117476962 117476962 C T TESC Missense_Mutation p.M207I 0.27 deleterious(0.01) benign(0.049) TCGA-EM-A2CU-01 16 845756 845756 C T CHTF18 Silent p.R749R 0.28 TCGA-EM-A2CU-01 1 23645159 23645159 G A HNRNPR Silent p.L281L 0.23 TCGA-EM-A2CU-01 1 62550208 62550208 C G INADL Nonsense_Mutation p.S1422* 0.08 TCGA-EM-A2CU-01 20 6065760 6065760 C G FERMT1 Missense_Mutation p.E516Q 0.05 tolerated(0.16) probably_damaging(1) TCGA-EM-A2CU-01 5 129520924 129520924 A T CHSY3 Nonsense_Mutation p.R697* 0.21 TCGA-EM-A2CU-01 X 135827439 135827439 G A ARHGEF6 Silent p.N134N 0.38 TCGA-EM-A2OV-01 10 70411612 70411612 T C TET1 Missense_Mutation p.I1429T 0.05 tolerated(0.23) benign(0.017) TCGA-EM-A2OV-01 10 95849061 95849061 C T PLCE1 Intron 0.36 TCGA-EM-A2OV-01 12 46244083 46244084 - A ARID2 Frame_Shift_Ins p.G727Rfs*5 0.23 TCGA-EM-A2OV-01 13 32835817 32835817 G A FRY Missense_Mutation p.C2494Y 0.40 tolerated(1) benign(0.222) TCGA-EM-A2OV-01 17 40857116 40857116 T A EZH1 Missense_Mutation p.Y642F 0.26 deleterious(0.01) possibly_damaging(0.634) TCGA-EM-A2OV-01 17 9763385 9763385 C T GLP2R Missense_Mutation p.R298W 0.29 tolerated(0.08) benign(0.117) TCGA-EM-A2OV-01 18 265318 265318 A C THOC1 Missense_Mutation p.I58M 0.32 tolerated(0.23) benign(0.068) TCGA-EM-A2OV-01 19 44661248 44661248 A G ZNF234 Missense_Mutation p.Q360R 0.07 tolerated(0.23) benign(0.107) TCGA-EM-A2OV-01 1 152275656 152275656 G A FLG Silent p.P3902P 0.05 TCGA-EM-A2OV-01 1 155004126 155004126 C T DCST2 Missense_Mutation p.M221I 0.08 tolerated(0.32) benign(0.005) TCGA-EM-A2OV-01 20 30745657 30745657 G A TM9SF4 Missense_Mutation p.V464I 0.34 tolerated(0.06) possibly_damaging(0.514) TCGA-EM-A2OV-01 20 49366339 49366339 A T PARD6B Missense_Mutation p.I145F 0.36 deleterious(0) probably_damaging(0.997) TCGA-EM-A2OV-01 2 21231425 21231425 T A APOB Missense_Mutation p.D2772V 0.06 probably_damaging(0.997) TCGA-EM-A2OV-01 3 134960104 134960104 G A EPHB1 Missense_Mutation p.G821R 0.34 deleterious(0) probably_damaging(1) TCGA-EM-A2OV-01 3 14558718 14558718 A G GRIP2 RNA 0.07 TCGA-EM-A2OV-01 6 72968798 72968798 T G RIMS1 Missense_Mutation p.L1013V 0.35 tolerated(0.67) benign(0.282) TCGA-EM-A2OW-01 10 75435071 75435071 G A AGAP5 Silent p.C449C 0.25 TCGA-EM-A2OW-01 12 41966431 41966431 T C PDZRN4 Missense_Mutation p.I617T 0.24 tolerated(0.4) benign(0.002) TCGA-EM-A2OW-01 12 9355129 9355129 C T PZP Missense_Mutation p.G140E 0.04 tolerated(0.09) benign(0.012) TCGA-EM-A2OW-01 13 108518546 108518546 G C FAM155A Silent p.P133P 0.31 TCGA-EM-A2OW-01 14 81609760 81609760 T C TSHR Missense_Mutation p.M453T 0.33 deleterious(0) probably_damaging(0.999) TCGA-EM-A2OW-01 16 23498084 23498084 G T GGA2 Missense_Mutation p.H203N 0.24 tolerated(0.27) possibly_damaging(0.474) TCGA-EM-A2OW-01 17 16527226 16527227 - T ZNF624 Frame_Shift_Ins p.I325Nfs*9 0.25 TCGA-EM-A2OW-01 19 24310503 24310503 T G ZNF254 Missense_Mutation p.I567M 0.29 deleterious(0.02) possibly_damaging(0.839) TCGA-EM-A2OW-01 19 45397111 45397111 C T TOMM40 Silent p.P170P 0.32 TCGA-EM-A2OW-01 1 104160681 104160681 G A AMY2A Missense_Mutation p.D92N 0.03 tolerated(0.5) benign(0.001) TCGA-EM-A2OW-01 1 67705965 67705965 G A IL23R Splice_Site p.X383_splice 0.09 TCGA-EM-A2OW-01 21 46363721 46363721 G A FAM207A Silent p.S84S 0.24 TCGA-EM-A2OW-01 22 39083872 39083872 A C JOSD1 3'UTR 0.32 TCGA-EM-A2OW-01 2 191900911 191900911 T A STAT4 Missense_Mutation p.M517L 0.07 deleterious(0.01) possibly_damaging(0.878) TCGA-EM-A2OW-01 4 105412390 105412390 C T CXXC4 Silent p.L190L 0.05 TCGA-EM-A2OW-01 5 172195717 172195717 A G DUSP1 3'UTR 0.31 TCGA-EM-A2OW-01 8 12948874 12948874 T A DLC1 Missense_Mutation p.T1270S 0.26 deleterious(0.02) possibly_damaging(0.454) TCGA-EM-A2OW-01 9 119770423 119770423 G A ASTN2 Silent p.L462L 0.11 TCGA-EM-A2OW-01 X 130411859 130411859 G C IGSF1 Missense_Mutation p.P769R 0.06 deleterious(0) benign(0.067) TCGA-EM-A2OX-01 10 101953150 101953150 T C CHUK Silent p.L671L 0.28 TCGA-EM-A2OX-01 10 37454025 37454025 A T ANKRD30A Missense_Mutation p.E613V 0.11 tolerated(0.08) benign(0.097) TCGA-EM-A2OX-01 15 76019886 76019886 C T ODF3L1 3'UTR 0.15 TCGA-EM-A2OX-01 16 31374648 31374648 C T ITGAX Silent p.L555L 0.25 TCGA-EM-A2OX-01 16 67692859 67692859 T C ACD Missense_Mutation p.H292R 0.17 tolerated(1) benign(0) TCGA-EM-A2OX-01 1 179112141 179112141 A G ABL2 Intron 0.12 TCGA-EM-A2OX-01 5 175110700 175110700 A T HRH2 Missense_Mutation p.H155L 0.12 deleterious(0) probably_damaging(0.992) TCGA-EM-A2OX-01 6 117662322 117662322 G A ROS1 Silent p.I1685I 0.22 TCGA-EM-A2OX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EM-A2OX-01 7 64438817 64438817 T C ZNF117 Missense_Mutation p.T378A 0.11 tolerated(0.44) benign(0.005) TCGA-EM-A2OX-01 9 5029859 5029859 C T JAK2 Silent p.V101V 0.14 TCGA-EM-A2OY-01 10 98155751 98155751 C T TLL2 Missense_Mutation p.D471N 0.30 tolerated(0.25) benign(0.134) TCGA-EM-A2OY-01 11 5528997 5528997 T C UBQLN3 Missense_Mutation p.M598V 0.59 tolerated(0.1) benign(0.002) TCGA-EM-A2OY-01 12 1940261 1940261 G A LRTM2 Silent p.L76L 0.24 TCGA-EM-A2OY-01 14 103568560 103568560 C T EXOC3L4 Missense_Mutation p.T167I 0.25 deleterious(0.03) possibly_damaging(0.459) TCGA-EM-A2OY-01 17 39334209 39334209 A G KRTAP4-2 Missense_Mutation p.C70R 0.14 deleterious(0) probably_damaging(0.991) TCGA-EM-A2OY-01 19 57746914 57746914 C G AURKC 3'UTR 0.19 TCGA-EM-A2OY-01 1 219384958 219384958 C T LYPLAL1 Missense_Mutation p.T201M 0.19 deleterious(0.03) benign(0.266) TCGA-EM-A2OY-01 2 228476316 228476316 C T C2orf83 Missense_Mutation p.V83I 0.10 deleterious_low_confidence(0.01) benign(0.103) TCGA-EM-A2OY-01 2 62934306 62934306 C T EHBP1 5'UTR 0.29 TCGA-EM-A2OY-01 2 62934326 62934326 C G EHBP1 5'UTR 0.35 TCGA-EM-A2OY-01 2 62934336 62934336 G T EHBP1 Missense_Mutation p.V4F 0.38 deleterious(0) probably_damaging(0.998) TCGA-EM-A2OY-01 2 67630066 67630066 G T ETAA1 Missense_Mutation p.V168L 0.05 deleterious(0.01) possibly_damaging(0.604) TCGA-EM-A2OY-01 5 178408846 178408846 G - GRM6 Frame_Shift_Del p.Q816Rfs*5 0.19 TCGA-EM-A2OY-01 5 77311327 77311327 G A AP3B1 Missense_Mutation p.A1013V 0.23 tolerated(0.14) possibly_damaging(0.483) TCGA-EM-A2OY-01 6 75843113 75843113 T C COL12A1 Missense_Mutation p.Y1897C 0.31 probably_damaging(0.994) TCGA-EM-A2OY-01 7 37780300 37780300 C T GPR141 Missense_Mutation p.T102M 0.20 deleterious(0) probably_damaging(0.991) TCGA-EM-A2OY-01 7 99720117 99720117 G A CNPY4 Missense_Mutation p.E87K 0.18 deleterious(0.05) possibly_damaging(0.872) TCGA-EM-A2OY-01 X 122866877 122866882 CTCTCA - THOC2 5'UTR 0.19 TCGA-EM-A2OY-01 X 9862838 9862838 A G SHROOM2 Missense_Mutation p.N297S 0.21 tolerated(1) benign(0.001) TCGA-EM-A2OZ-01 10 131506231 131506231 G A MGMT Silent p.L97L 0.09 TCGA-EM-A2OZ-01 10 79593779 79593779 C G DLG5 Silent p.L547L 0.11 TCGA-EM-A2OZ-01 13 32747677 32747677 G A FRY Silent p.G775G 0.08 TCGA-EM-A2OZ-01 14 105418953 105418953 C G AHNAK2 Silent p.L945L 0.10 TCGA-EM-A2OZ-01 14 50100226 50100226 G A DNAAF2 Missense_Mutation p.L548F 0.10 tolerated(0.08) possibly_damaging(0.8) TCGA-EM-A2OZ-01 15 51984517 51984517 G A SCG3 Silent p.L284L 0.09 TCGA-EM-A2OZ-01 16 21974204 21974204 C T UQCRC2 Missense_Mutation p.T171I 0.19 tolerated(0.62) benign(0.005) TCGA-EM-A2OZ-01 16 31012260 31012260 G C STX1B Missense_Mutation p.S90C 0.05 deleterious(0.04) possibly_damaging(0.817) TCGA-EM-A2OZ-01 16 53968001 53968001 G A FTO Silent p.L448L 0.14 TCGA-EM-A2OZ-01 16 720708 720708 A G RHOT2 Missense_Mutation p.I192V 0.09 tolerated(0.14) benign(0.144) TCGA-EM-A2OZ-01 17 34264854 34264854 C G LYZL6 Missense_Mutation p.S69T 0.15 deleterious(0.02) possibly_damaging(0.467) TCGA-EM-A2OZ-01 1 3328631 3328642 GACCTGGACAGC - PRDM16 In_Frame_Del p.L625_D628del 0.27 TCGA-EM-A2OZ-01 20 2552906 2552906 G A TMC2 Silent p.L212L 0.09 TCGA-EM-A2OZ-01 20 3190194 3190194 C T ITPA 5'UTR 0.15 TCGA-EM-A2OZ-01 20 9624844 9624844 C T PAK7 Missense_Mutation p.D45N 0.10 tolerated(0.2) probably_damaging(0.997) TCGA-EM-A2OZ-01 2 203620264 203620264 C T FAM117B Missense_Mutation p.P322S 0.07 tolerated(0.46) benign(0.172) TCGA-EM-A2OZ-01 2 215819926 215819926 C T ABCA12 Silent p.P2131P 0.35 TCGA-EM-A2OZ-01 2 241402796 241402796 C G GPC1 Silent p.V250V 0.09 TCGA-EM-A2OZ-01 2 27535568 27535568 C T MPV17 Silent p.L86L 0.10 TCGA-EM-A2OZ-01 2 43459849 43459849 C T THADA Intron 0.15 TCGA-EM-A2OZ-01 3 119217561 119217561 C T TIMMDC1 5'UTR 0.12 TCGA-EM-A2OZ-01 3 142840198 142840198 C T CHST2 Silent p.F180F 0.08 TCGA-EM-A2OZ-01 3 159713292 159713292 C T IL12A Silent p.F236F 0.07 TCGA-EM-A2OZ-01 3 58260481 58260481 C G ABHD6 Missense_Mutation p.P207R 0.08 deleterious(0.03) possibly_damaging(0.78) TCGA-EM-A2OZ-01 4 159789776 159789776 C G FNIP2 Nonsense_Mutation p.S663* 0.17 TCGA-EM-A2OZ-01 5 141039378 141039378 C G ARAP3 Missense_Mutation p.E1079Q 0.12 deleterious(0) benign(0.224) TCGA-EM-A2OZ-01 5 37173962 37173962 A C C5orf42 Silent p.A2022A 0.14 TCGA-EM-A2OZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-EM-A2OZ-01 7 44575963 44575963 C T NPC1L1 Silent p.G582G 0.07 TCGA-EM-A2OZ-01 9 101749591 101749591 C T COL15A1 Missense_Mutation p.L222F 0.34 deleterious(0) probably_damaging(0.998) TCGA-EM-A2OZ-01 X 54784371 54784371 A G ITIH6 Silent p.D712D 0.19 TCGA-EM-A2P0-01 13 95727771 95727773 AGA - ABCC4 In_Frame_Del p.S907del 0.27 TCGA-EM-A2P0-01 16 72829160 72829160 A C ZFHX3 Missense_Mutation p.L2474R 0.04 unknown(0) TCGA-EM-A2P0-01 3 49764412 49764412 A G IP6K1 3'UTR 0.17 TCGA-EM-A2P0-01 7 100675605 100675605 A G MUC17 Missense_Mutation p.N303S 0.03 benign(0.014) TCGA-EM-A2P0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-EM-A2P1-01 19 50017183 50017183 C G FCGRT Missense_Mutation p.P40A 0.18 tolerated(0.09) benign(0.045) TCGA-EM-A2P1-01 1 22005802 22005802 G C USP48 3'UTR 0.23 TCGA-EM-A2P1-01 22 47059056 47059056 C T GRAMD4 Silent p.L196L 0.17 TCGA-EM-A2P1-01 2 63283329 63283329 G A OTX1 Missense_Mutation p.D315N 0.17 deleterious(0) unknown(0) TCGA-EM-A2P1-01 3 142037638 142037638 T C XRN1 Silent p.Q1503Q 0.08 TCGA-EM-A2P1-01 6 31599848 31599848 C T PRRC2A Missense_Mutation p.T1133I 0.07 unknown(0) TCGA-EM-A2P1-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.14 deleterious(0) probably_damaging(0.967) TCGA-EM-A2P1-01 9 100849621 100849621 C T TRIM14 3'UTR 0.13 TCGA-EM-A2P2-01 10 129676574 129676574 T A CLRN3 Missense_Mutation p.T174S 0.39 tolerated(0.4) benign(0.146) TCGA-EM-A2P2-01 10 129676575 129676575 C A CLRN3 Silent p.T173T 0.39 TCGA-EM-A2P2-01 12 32793220 32793220 C T FGD4 Missense_Mutation p.A685V 0.34 deleterious(0.02) probably_damaging(0.967) TCGA-EM-A2P2-01 12 49087252 49087252 C A CCNT1 Missense_Mutation p.G582V 0.46 tolerated_low_confidence(0.08) benign(0.008) TCGA-EM-A2P2-01 13 111160356 111160356 T - COL4A2 Frame_Shift_Del p.Y1557Mfs*19 0.24 TCGA-EM-A2P2-01 15 43270075 43270076 - A UBR1 Intron 0.30 TCGA-EM-A2P2-01 15 49052457 49052457 T C CEP152 Missense_Mutation p.I857V 0.38 tolerated(0.55) benign(0.003) TCGA-EM-A2P2-01 16 74919593 74919593 A C WDR59 Missense_Mutation p.L883V 0.31 deleterious(0) probably_damaging(0.996) TCGA-EM-A2P2-01 17 11607602 11607602 C T DNAH9 Missense_Mutation p.A1745V 0.06 possibly_damaging(0.762) TCGA-EM-A2P2-01 19 36219029 36219029 G A KMT2B Missense_Mutation p.A1510T 0.42 probably_damaging(0.959) TCGA-EM-A2P2-01 1 40767021 40767021 C T COL9A2 Missense_Mutation p.G635S 0.22 deleterious(0.02) probably_damaging(0.949) TCGA-EM-A2P2-01 2 108489382 108489382 A G RGPD4 Missense_Mutation p.K1641R 0.30 deleterious_low_confidence(0.04) benign(0.085) TCGA-EM-A2P2-01 3 183963511 183963511 C T ALG3 Missense_Mutation p.G96R 0.44 deleterious(0) probably_damaging(0.987) TCGA-EM-A2P2-01 4 107216253 107216253 C T TBCK Silent p.V88V 0.37 TCGA-EM-A2P2-01 4 1165191 1165191 C T SPON2 Missense_Mutation p.E102K 0.17 tolerated(0.2) benign(0.094) TCGA-EM-A2P2-01 4 54440038 54440038 G C LNX1 Missense_Mutation p.C44W 0.13 deleterious(0) probably_damaging(1) TCGA-EM-A2P2-01 6 111652902 111652902 G A REV3L Missense_Mutation p.P2671S 0.05 deleterious(0) probably_damaging(1) TCGA-EM-A2P2-01 6 128135044 128135044 G T THEMIS Missense_Mutation p.L248I 0.46 deleterious(0) probably_damaging(0.999) TCGA-EM-A2P2-01 7 100285940 100285940 A T GIGYF1 5'UTR 0.58 TCGA-EM-A2P2-01 7 138597183 138597183 C T KIAA1549 Missense_Mutation p.E968K 0.33 tolerated(0.05) benign(0.437) TCGA-EM-A2P2-01 9 13138104 13138104 A G MPDZ Missense_Mutation p.I1351T 0.45 deleterious(0) probably_damaging(1) TCGA-EM-A2P2-01 9 39887985 39887985 C T SPATA31A2 Silent p.G324G 0.22 TCGA-EM-A2P3-01 15 55839051 55839051 G A PYGO1 Missense_Mutation p.H144Y 0.36 tolerated(0.49) benign(0.031) TCGA-EM-A2P3-01 17 55962647 55962647 G - CUEDC1 Frame_Shift_Del p.S94Afs*153 0.28 TCGA-EM-A2P3-01 1 152285608 152285608 C T FLG Missense_Mutation p.G585E 0.07 probably_damaging(0.986) TCGA-EM-A2P3-01 1 31845844 31845844 C A FABP3 Silent p.L6L 0.07 TCGA-EM-A2P3-01 20 306862 306862 C T SOX12 Silent p.L98L 0.19 TCGA-EM-A2P3-01 20 9546574 9546574 C T PAK7 Missense_Mutation p.R483Q 0.13 deleterious(0) probably_damaging(0.99) TCGA-EM-A2P3-01 22 50436469 50436469 G A IL17REL Silent p.P268P 0.22 TCGA-EM-A2P3-01 3 15301347 15301347 T C SH3BP5 Intron 0.09 TCGA-EM-A2P3-01 4 139157528 139157528 C A SLC7A11 Missense_Mutation p.G119C 0.29 deleterious(0) probably_damaging(0.998) TCGA-EM-A2P3-01 4 186578641 186578641 T C SORBS2 Silent p.K168K 0.14 TCGA-EM-A2P3-01 5 178418557 178418557 C G GRM6 Missense_Mutation p.G242A 0.27 deleterious(0.02) possibly_damaging(0.803) TCGA-EM-A2P3-01 6 41029581 41029583 GAG - APOBEC2 In_Frame_Del p.E217del 0.37 TCGA-EM-A2P3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-EM-A2P3-01 9 96051588 96051588 C G WNK2 Missense_Mutation p.P1555A 0.26 unknown(0) TCGA-EM-A3AI-01 12 131484927 131484927 G C GPR133 Splice_Site p.X323_splice 0.22 TCGA-EM-A3AI-01 14 21238577 21238577 C T EDDM3B Nonsense_Mutation p.R90* 0.48 TCGA-EM-A3AI-01 17 7612771 7612771 C T EFNB3 Silent p.G300G 0.15 TCGA-EM-A3AI-01 18 55998052 55998052 G T NEDD4L Missense_Mutation p.G299V 0.11 tolerated(0.37) benign(0) TCGA-EM-A3AI-01 19 18572546 18572546 C T ELL Missense_Mutation p.V196M 0.38 tolerated(0.24) benign(0.243) TCGA-EM-A3AI-01 19 44224116 44224116 G A IRGC 3'UTR 0.33 TCGA-EM-A3AI-01 20 44515629 44515629 T C SPATA25 Missense_Mutation p.R71G 0.24 tolerated_low_confidence(0.07) probably_damaging(0.997) TCGA-EM-A3AI-01 21 31023467 31023467 C T GRIK1 Missense_Mutation p.E309K 0.15 tolerated(0.23) benign(0.138) TCGA-EM-A3AI-01 2 179417575 179417575 G T TTN Missense_Mutation p.P30018T 0.09 TCGA-EM-A3AI-01 4 25265420 25265420 A G PI4K2B Missense_Mutation p.I343V 0.43 deleterious(0) probably_damaging(0.98) TCGA-EM-A3AI-01 5 54456042 54456042 C T GPX8 Missense_Mutation p.P8S 0.51 tolerated_low_confidence(0.1) benign(0.027) TCGA-EM-A3AI-01 8 113529419 113529419 G A CSMD3 Missense_Mutation p.P1534S 0.08 deleterious(0) probably_damaging(0.981) TCGA-EM-A3AI-01 8 133885318 133885318 T G TG Missense_Mutation p.C164G 0.11 deleterious(0) probably_damaging(0.999) TCGA-EM-A3AI-01 X 131205246 131205246 G A MST4 Splice_Site p.X311_splice 0.10 TCGA-EM-A3AJ-01 12 106460871 106460871 G A NUAK1 Silent p.Y565Y 0.13 TCGA-EM-A3AJ-01 12 112589709 112589709 T G TRAFD1 Missense_Mutation p.Y462D 0.06 tolerated(0.2) benign(0.076) TCGA-EM-A3AJ-01 16 77396028 77396028 C T ADAMTS18 Nonsense_Mutation p.W397* 0.16 TCGA-EM-A3AJ-01 6 151939128 151939128 T G CCDC170 Missense_Mutation p.V665G 0.19 deleterious(0) possibly_damaging(0.813) TCGA-EM-A3AJ-01 6 30128710 30128710 T C TRIM10 5'UTR 0.22 TCGA-EM-A3AJ-01 9 17236437 17236437 G A CNTLN Missense_Mutation p.E234K 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-EM-A3AK-01 15 45249168 45249168 A G C15orf43 Missense_Mutation p.T47A 0.04 deleterious(0) probably_damaging(0.997) TCGA-EM-A3AK-01 15 85401117 85401117 G A ALPK3 Missense_Mutation p.A1252T 0.10 tolerated(0.16) possibly_damaging(0.606) TCGA-EM-A3AK-01 19 12502822 12502822 T C ZNF799 Silent p.P130P 0.03 TCGA-EM-A3AK-01 19 33493198 33493198 C A RHPN2 Missense_Mutation p.A354S 0.07 tolerated(0.18) benign(0.414) TCGA-EM-A3AK-01 19 59060278 59060279 - T TRIM28 Splice_Site p.X470_splice 0.14 TCGA-EM-A3AK-01 19 860954 860954 C A CFD Silent p.P102P 0.12 TCGA-EM-A3AK-01 1 153507784 153507784 A C S100A6 Missense_Mutation p.L11R 0.06 deleterious(0.02) possibly_damaging(0.691) TCGA-EM-A3AK-01 1 244724433 244724433 A T C1orf101 Missense_Mutation p.H498L 0.06 deleterious(0) probably_damaging(0.911) TCGA-EM-A3AK-01 1 248367157 248367157 C T OR2M3 Missense_Mutation p.T263I 0.36 tolerated(0.08) benign(0.033) TCGA-EM-A3AK-01 3 16254129 16254129 C T GALNT15 Silent p.H417H 0.32 TCGA-EM-A3AK-01 5 112420872 112420872 G A MCC Missense_Mutation p.P512S 0.18 tolerated(0.11) probably_damaging(0.994) TCGA-EM-A3AK-01 5 75919071 75919071 C A F2RL2 5'UTR 0.09 TCGA-EM-A3AK-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-EM-A3AK-01 8 142231785 142231785 A T SLC45A4 Silent p.S56S 0.11 TCGA-EM-A3AL-01 13 95121126 95121126 C T DCT Missense_Mutation p.V157M 0.35 deleterious(0.04) probably_damaging(0.965) TCGA-EM-A3AL-01 14 105212622 105212622 T G ADSSL1 Silent p.P450P 0.08 TCGA-EM-A3AL-01 15 34537938 34537938 G A SLC12A6 Silent p.L594L 0.05 TCGA-EM-A3AL-01 16 50666208 50666208 C T NKD1 Missense_Mutation p.R238C 0.41 tolerated(0.07) possibly_damaging(0.721) TCGA-EM-A3AL-01 17 30615975 30615975 C T RHBDL3 Silent p.Y153Y 0.39 TCGA-EM-A3AL-01 18 32374191 32374191 C T DTNA Silent p.N113N 0.13 TCGA-EM-A3AL-01 20 5169753 5169753 C T CDS2 Missense_Mutation p.A341V 0.38 tolerated(0.3) benign(0.271) TCGA-EM-A3AL-01 21 41648055 41648055 G A DSCAM Silent p.D775D 0.05 TCGA-EM-A3AL-01 4 48501632 48501632 A G FRYL Missense_Mutation p.I2950T 0.04 deleterious(0) probably_damaging(0.992) TCGA-EM-A3AL-01 5 44809124 44809124 C T MRPS30 Silent p.T20T 0.39 TCGA-EM-A3AL-01 6 29141930 29141930 G A OR2J2 Missense_Mutation p.R173H 0.20 tolerated(0.63) benign(0.005) TCGA-EM-A3AL-01 6 70034893 70034893 C T BAI3 Missense_Mutation p.R982C 0.09 deleterious(0) probably_damaging(0.938) TCGA-EM-A3AL-01 9 130213590 130213590 G A RPL12 Missense_Mutation p.P3S 0.08 deleterious(0.03) possibly_damaging(0.601) TCGA-EM-A3AL-01 9 89560958 89560958 G C GAS1 Missense_Mutation p.A246G 0.17 tolerated(0.13) benign(0.004) TCGA-EM-A3AL-01 X 101093791 101093791 G A NXF5 Missense_Mutation p.R236W 0.11 deleterious(0.03) possibly_damaging(0.896) TCGA-EM-A3AL-01 X 12837725 12837725 C T PRPS2 Silent p.D213D 0.30 TCGA-EM-A3AL-01 X 1407736 1407736 C T CSF2RA Missense_Mutation p.T143M 0.07 deleterious(0.01) probably_damaging(0.938) TCGA-EM-A3AN-01 14 105423749 105423749 G T AHNAK2 Missense_Mutation p.Q71K 0.15 benign(0.056) TCGA-EM-A3AN-01 17 71166132 71166132 G T SSTR2 Missense_Mutation p.C225F 0.10 deleterious(0.03) possibly_damaging(0.679) TCGA-EM-A3AN-01 19 42603703 42603703 C A POU2F2 Missense_Mutation p.Q159H 0.30 deleterious(0.03) possibly_damaging(0.646) TCGA-EM-A3AN-01 2 202216069 202216069 C T ALS2CR12 Missense_Mutation p.R20Q 0.34 tolerated(0.17) benign(0.097) TCGA-EM-A3AN-01 3 48732456 48732456 C A IP6K2 Intron 0.35 TCGA-EM-A3AN-01 4 128627849 128627850 - A INTU Frame_Shift_Ins p.T668Nfs*3 0.27 TCGA-EM-A3AN-01 6 105198273 105198273 C A HACE1 Missense_Mutation p.Q762H 0.06 tolerated(0.06) possibly_damaging(0.482) TCGA-EM-A3AN-01 8 3008978 3008978 G T CSMD1 Missense_Mutation p.P1991Q 0.26 probably_damaging(1) TCGA-EM-A3AO-01 11 57075943 57075943 G A TNKS1BP1 Silent p.Y1414Y 0.31 TCGA-EM-A3AO-01 14 23866411 23866411 C T MYH6 Missense_Mutation p.R673H 0.31 deleterious(0.01) probably_damaging(1) TCGA-EM-A3AO-01 16 30495432 30495432 A - ITGAL Splice_Site p.X286_splice 0.25 TCGA-EM-A3AO-01 17 27068491 27068491 A G NEK8 Missense_Mutation p.D651G 0.31 tolerated(0.08) benign(0.026) TCGA-EM-A3AO-01 18 77659600 77659600 G A KCNG2 Silent p.L395L 0.08 TCGA-EM-A3AO-01 20 6022440 6022440 C T LRRN4 Missense_Mutation p.G484D 0.27 tolerated(0.13) benign(0.003) TCGA-EM-A3AO-01 3 51895733 51895733 C A IQCF2 Intron 0.30 TCGA-EM-A3AO-01 4 103988620 103988620 G A SLC9B2 Nonsense_Mutation p.Q30* 0.05 TCGA-EM-A3AO-01 4 120463753 120463753 G C PDE5A Missense_Mutation p.T478S 0.37 tolerated(0.97) benign(0.002) TCGA-EM-A3AO-01 8 133883736 133883736 T G TG Missense_Mutation p.C140G 0.34 deleterious(0) probably_damaging(1) TCGA-EM-A3AP-01 10 115978234 115978234 A G TDRD1 Silent p.V795V 0.03 TCGA-EM-A3AP-01 11 57573460 57573460 A C CTNND1 Missense_Mutation p.N610T 0.09 tolerated(0.35) benign(0.027) TCGA-EM-A3AP-01 11 7687683 7687683 A C CYB5R2 Missense_Mutation p.I219M 0.24 deleterious(0.01) benign(0.155) TCGA-EM-A3AP-01 14 22938320 22938320 A G TRDV3 Silent p.C18C 0.52 TCGA-EM-A3AP-01 16 70187304 70187304 A T PDPR Missense_Mutation p.H688L 0.15 deleterious(0) probably_damaging(0.976) TCGA-EM-A3AP-01 19 4234672 4234672 G T EBI3 Missense_Mutation p.D130Y 0.03 deleterious(0) probably_damaging(0.997) TCGA-EM-A3AP-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.30 deleterious(0.01) benign(0.045) TCGA-EM-A3AP-01 1 200539119 200539119 A T KIF14 Missense_Mutation p.M1194K 0.32 deleterious(0) possibly_damaging(0.735) TCGA-EM-A3AP-01 20 61956821 61956821 G A COL20A1 Missense_Mutation p.G1108E 0.03 deleterious(0) probably_damaging(1) TCGA-EM-A3AP-01 22 20079439 20079439 G A DGCR8 Missense_Mutation p.E518K 0.53 deleterious(0) probably_damaging(1) TCGA-EM-A3AP-01 4 166416761 166416761 A G CPE Missense_Mutation p.T422A 0.05 deleterious(0.02) benign(0.011) TCGA-EM-A3AP-01 5 134094546 134094546 G A DDX46 5'UTR 0.07 TCGA-EM-A3AP-01 5 140032663 140032663 A T IK Missense_Mutation p.D113V 0.28 deleterious(0) probably_damaging(0.994) TCGA-EM-A3AQ-01 10 1060250 1060250 G A GTPBP4 Missense_Mutation p.D536N 0.42 tolerated(0.32) benign(0) TCGA-EM-A3AQ-01 12 56664037 56664037 C T COQ10A Missense_Mutation p.T227I 0.04 tolerated(0.06) benign(0.07) TCGA-EM-A3AQ-01 14 45583710 45583710 G C PRPF39 Missense_Mutation p.E616Q 0.07 tolerated(0.09) benign(0.025) TCGA-EM-A3AQ-01 19 4219657 4219657 C T ANKRD24 Nonsense_Mutation p.Q1025* 0.37 TCGA-EM-A3AQ-01 22 18604302 18604302 C T TUBA8 Silent p.C20C 0.47 TCGA-EM-A3AQ-01 3 31641886 31641886 A G STT3B Missense_Mutation p.N271S 0.05 deleterious(0.02) possibly_damaging(0.764) TCGA-EM-A3AQ-01 4 25785870 25785870 T C SEL1L3 Missense_Mutation p.M754V 0.08 deleterious(0.01) possibly_damaging(0.869) TCGA-EM-A3AQ-01 6 30043521 30043521 C T RNF39 Missense_Mutation p.E16K 0.36 deleterious_low_confidence(0.03) possibly_damaging(0.811) TCGA-EM-A3AQ-01 6 35436757 35436757 G T RPL10A Missense_Mutation p.L38F 0.41 deleterious(0) probably_damaging(0.988) TCGA-EM-A3AQ-01 7 119915766 119915766 C T KCND2 Silent p.A360A 0.08 TCGA-EM-A3AQ-01 8 124361673 124361673 G A ATAD2 Missense_Mutation p.S553F 0.05 deleterious(0) probably_damaging(0.997) TCGA-EM-A3AQ-01 9 134351428 134351428 C A PRRC2B Silent p.P1304P 0.43 TCGA-EM-A3AQ-01 X 102317829 102317829 G A BEX1 Missense_Mutation p.P125L 0.04 deleterious(0) probably_damaging(1) TCGA-EM-A3AR-01 19 7997808 7997810 TCG - TIMM44 In_Frame_Del p.F259_E260delinsL 0.12 TCGA-EM-A3AR-01 2 44099167 44099167 G A ABCG8 Silent p.R339R 0.10 TCGA-EM-A3AR-01 2 96047380 96047380 A G KCNIP3 Missense_Mutation p.T162A 0.09 deleterious(0.03) possibly_damaging(0.627) TCGA-EM-A3AR-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.11 deleterious(0) probably_damaging(0.967) TCGA-EM-A3AR-01 7 44797683 44797683 G C ZMIZ2 Missense_Mutation p.Q263H 0.16 deleterious(0.01) benign(0.049) TCGA-EM-A3AR-01 9 116930153 116930153 C T COL27A1 Silent p.S106S 0.15 TCGA-EM-A3FJ-01 12 70723333 70723333 G T CNOT2 Silent p.T123T 0.05 TCGA-EM-A3FJ-01 13 41635773 41635773 G A WBP4 5'UTR 0.06 TCGA-EM-A3FJ-01 1 149858929 149858930 - C HIST2H2AC 3'UTR 0.31 TCGA-EM-A3FJ-01 6 74117732 74117732 A - DDX43 Frame_Shift_Del p.G365Vfs*2 0.15 TCGA-EM-A3FJ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-EM-A3FK-01 12 57563020 57563020 C G LRP1 Missense_Mutation p.H1031Q 0.06 benign(0.306) TCGA-EM-A3FK-01 14 99640635 99640635 G A BCL11B Silent p.H846H 0.10 TCGA-EM-A3FK-01 16 67036990 67036990 C G CES4A Silent p.A236A 0.34 TCGA-EM-A3FK-01 17 1456343 1456343 T C PITPNA Missense_Mutation p.D51G 0.38 tolerated(0.45) benign(0.223) TCGA-EM-A3FK-01 17 16338272 16338272 C A TRPV2 Missense_Mutation p.A728E 0.30 tolerated(0.42) benign(0.003) TCGA-EM-A3FK-01 22 42456275 42456275 C A NAGA 3'UTR 0.08 TCGA-EM-A3FK-01 22 51044090 51044090 C T MAPK8IP2 Missense_Mutation p.R647C 0.13 deleterious(0) probably_damaging(0.999) TCGA-EM-A3FK-01 3 4508939 4508939 C A SUMF1 5'UTR 0.24 TCGA-EM-A3FK-01 5 140559343 140559343 G T PCDHB8 Silent p.L576L 0.18 TCGA-EM-A3FK-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-EM-A3FK-01 9 138713116 138713116 G A CAMSAP1 Missense_Mutation p.P1131S 0.07 deleterious(0.01) possibly_damaging(0.792) TCGA-EM-A3FK-01 X 15841095 15841095 G A ZRSR2 Silent p.G393G 0.14 TCGA-EM-A3FL-01 12 417066 417066 T G KDM5A Missense_Mutation p.K1162Q 0.23 deleterious(0.02) benign(0.071) TCGA-EM-A3FL-01 13 20004644 20004644 C A TPTE2 Missense_Mutation p.K422N 0.14 tolerated(0.07) benign(0.038) TCGA-EM-A3FL-01 15 56207613 56207613 T C NEDD4 Missense_Mutation p.K473E 0.05 deleterious_low_confidence(0.04) benign(0.009) TCGA-EM-A3FL-01 19 49385438 49385438 C T TULP2 Missense_Mutation p.R433H 0.24 tolerated(0.08) possibly_damaging(0.791) TCGA-EM-A3FL-01 1 95290099 95290099 C T SLC44A3 Silent p.L62L 0.05 TCGA-EM-A3FL-01 4 186291863 186291863 G A LRP2BP Silent p.H303H 0.05 TCGA-EM-A3FL-01 4 57189657 57189657 G A KIAA1211 Missense_Mutation p.R1101Q 0.09 deleterious(0) benign(0.417) TCGA-EM-A3FL-01 5 135288629 135288629 C T LECT2 Missense_Mutation p.C25Y 0.04 deleterious(0.04) probably_damaging(0.999) TCGA-EM-A3FL-01 6 160205735 160205735 G A TCP1 Silent p.I211I 0.29 TCGA-EM-A3FL-01 7 131012679 131012679 C T MKLN1 Silent p.V7V 0.09 TCGA-EM-A3FL-01 8 2832078 2832078 C T CSMD1 Missense_Mutation p.A2879T 0.19 benign(0.02) TCGA-EM-A3FL-01 9 102713485 102713485 A G STX17 Silent p.E111E 0.22 TCGA-EM-A3FL-01 X 131208267 131208267 C T MST4 3'UTR 0.12 TCGA-EM-A3FM-01 10 1229245 1229245 G A ADARB2 Missense_Mutation p.A703V 0.11 tolerated(0.27) probably_damaging(0.961) TCGA-EM-A3FM-01 10 13708265 13708265 C T FRMD4A Missense_Mutation p.A479T 0.30 deleterious(0.03) possibly_damaging(0.81) TCGA-EM-A3FM-01 11 130339245 130339245 C G ADAMTS15 Missense_Mutation p.T544S 0.09 tolerated(0.41) benign(0.001) TCGA-EM-A3FM-01 14 74971835 74971835 G A LTBP2 Missense_Mutation p.A1407V 0.05 tolerated(0.26) benign(0.002) TCGA-EM-A3FM-01 14 94964650 94964650 T A SERPINA12 Missense_Mutation p.N29Y 0.04 tolerated(0.13) benign(0.016) TCGA-EM-A3FM-01 15 48624595 48624595 C T DUT Silent p.D137D 0.21 TCGA-EM-A3FM-01 15 86270359 86270359 G A AKAP13 Silent p.E2299E 0.11 TCGA-EM-A3FM-01 17 7797853 7797853 G A CHD3 Missense_Mutation p.R458H 0.04 possibly_damaging(0.812) TCGA-EM-A3FM-01 18 48190438 48190438 C T MAPK4 Missense_Mutation p.A37V 0.06 deleterious(0) probably_damaging(0.994) TCGA-EM-A3FM-01 19 12297911 12297911 C T ZNF136 Nonsense_Mutation p.R240* 0.42 TCGA-EM-A3FM-01 1 100152261 100152261 A G PALMD Missense_Mutation p.K94R 0.19 tolerated(0.5) benign(0.09) TCGA-EM-A3FM-01 20 3090977 3090977 G A UBOX5 Intron 0.14 TCGA-EM-A3FM-01 3 121616260 121616260 T C SLC15A2 Silent p.Y73Y 0.45 TCGA-EM-A3FM-01 3 47042545 47042545 A G NBEAL2 Missense_Mutation p.T1454A 0.05 tolerated(0.09) benign(0.002) TCGA-EM-A3FM-01 4 47597705 47597705 G A CORIN 3'UTR 0.51 TCGA-EM-A3FM-01 5 40937653 40937653 G T C7 Splice_Site p.X143_splice 0.32 TCGA-EM-A3FM-01 6 158957887 158957887 C T TMEM181 Missense_Mutation p.R137C 0.10 deleterious(0) probably_damaging(0.912) TCGA-EM-A3FM-01 7 100200035 100200035 C A PCOLCE 5'UTR 0.15 TCGA-EM-A3FM-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-EM-A3FM-01 9 134004831 134004831 G A NUP214 Missense_Mutation p.A187T 0.08 unknown(0) TCGA-EM-A3FN-01 12 122669192 122669192 T C LRRC43 Missense_Mutation p.S93P 0.10 deleterious(0) probably_damaging(0.999) TCGA-EM-A3FN-01 12 53804795 53804795 A G SP1 Missense_Mutation p.N710S 0.09 deleterious(0) benign(0.235) TCGA-EM-A3FN-01 12 8202170 8202170 A C FOXJ2 Intron 0.21 TCGA-EM-A3FN-01 14 78365449 78365449 G C ADCK1 Missense_Mutation p.V197L 0.29 tolerated(0.21) benign(0.028) TCGA-EM-A3FN-01 15 43712831 43712831 G T TP53BP1 Silent p.S1451S 0.40 TCGA-EM-A3FN-01 17 1579616 1579616 T C PRPF8 Missense_Mutation p.T813A 0.06 tolerated(0.31) benign(0.002) TCGA-EM-A3FN-01 19 10071487 10071487 C T COL5A3 Missense_Mutation p.R1644H 0.04 unknown(0) TCGA-EM-A3FN-01 20 3065238 3065238 C T AVP Missense_Mutation p.G28D 0.03 deleterious(0) probably_damaging(0.942) TCGA-EM-A3FN-01 22 38240354 38240357 GGGC - ANKRD54 5'UTR 0.50 TCGA-EM-A3FN-01 22 50582545 50582545 A G MOV10L1 Missense_Mutation p.D793G 0.32 tolerated(0.13) benign(0.12) TCGA-EM-A3FN-01 3 160474030 160474030 G C PPM1L 5'UTR 0.40 TCGA-EM-A3FN-01 3 184081245 184081245 T G POLR2H 5'UTR 0.34 TCGA-EM-A3FN-01 3 98189173 98189173 C A OR5K1 Missense_Mutation p.F251L 0.27 deleterious(0.01) possibly_damaging(0.492) TCGA-EM-A3FN-01 3 98304370 98304370 G T CPOX Missense_Mutation p.P363T 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-EM-A3FN-01 4 82366917 82366917 C A RASGEF1B Missense_Mutation p.V269F 0.07 deleterious(0) probably_damaging(0.998) TCGA-EM-A3FN-01 6 159184419 159184419 C G SYTL3 Nonsense_Mutation p.S534* 0.35 TCGA-EM-A3FN-01 7 5568116 5568116 A C ACTB Missense_Mutation p.F200V 0.42 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-EM-A3FN-01 7 95822462 95822462 C T SLC25A13 Missense_Mutation p.V168M 0.40 tolerated(0.25) benign(0.004) TCGA-EM-A3FN-01 8 144898666 144898666 C G PUF60 3'UTR 0.50 TCGA-EM-A3FN-01 9 139301749 139301749 C A SDCCAG3 Missense_Mutation p.G223W 0.17 deleterious(0) probably_damaging(0.992) TCGA-EM-A3FN-01 9 92219990 92219990 C T GADD45G 5'UTR 0.41 TCGA-EM-A3FN-01 X 20156735 20156735 C T EIF1AX Missense_Mutation p.G8R 0.30 deleterious(0.03) unknown(0) TCGA-EM-A3FN-01 X 25031220 25031220 G T ARX Missense_Mutation p.H298N 0.30 tolerated(0.14) possibly_damaging(0.785) TCGA-EM-A3FO-01 12 117907529 117907529 C T KSR2 Silent p.L928L 0.17 TCGA-EM-A3FO-01 17 56274516 56274516 C T EPX Missense_Mutation p.R340C 0.07 deleterious(0.02) possibly_damaging(0.727) TCGA-EM-A3FO-01 17 8809033 8809033 C T PIK3R5 Missense_Mutation p.D76N 0.41 tolerated(0.06) possibly_damaging(0.864) TCGA-EM-A3FO-01 1 154300618 154300618 A T ATP8B2 Missense_Mutation p.M34L 0.04 tolerated(0.76) benign(0.14) TCGA-EM-A3FO-01 1 35370638 35370638 C T DLGAP3 Missense_Mutation p.R116H 0.22 deleterious(0) probably_damaging(0.98) TCGA-EM-A3FO-01 20 23064575 23064575 G T CD93 3'UTR 0.05 TCGA-EM-A3FO-01 6 132171140 132171140 C A ENPP1 Nonsense_Mutation p.C108* 0.11 TCGA-EM-A3FO-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-EM-A3FP-01 10 112335096 112335096 A G SMC3 Missense_Mutation p.I45V 0.40 deleterious(0) possibly_damaging(0.889) TCGA-EM-A3FP-01 11 4825377 4825377 G A OR52R1 Silent p.S78S 0.05 TCGA-EM-A3FP-01 14 75230940 75230940 C T YLPM1 Missense_Mutation p.P250S 0.18 unknown(0) TCGA-EM-A3FP-01 15 30012630 30012630 A C TJP1 Missense_Mutation p.S899A 0.26 tolerated(0.35) benign(0.005) TCGA-EM-A3FP-01 16 56642553 56642553 C T MT2A 5'UTR 0.34 TCGA-EM-A3FP-01 19 37005674 37005674 T G ZNF260 Missense_Mutation p.K156T 0.30 tolerated(0.09) possibly_damaging(0.809) TCGA-EM-A3FP-01 1 84967626 84967626 G A GNG5 Nonsense_Mutation p.Q37* 0.29 TCGA-EM-A3FP-01 2 190732589 190732589 A G PMS1 Missense_Mutation p.S803G 0.34 tolerated(0.18) benign(0.003) TCGA-EM-A3FP-01 2 198413081 198413081 A G HSPE1-MOB4 Missense_Mutation p.R162G 0.13 tolerated(0.18) possibly_damaging(0.593) TCGA-EM-A3FP-01 3 120389285 120389285 C G HGD Missense_Mutation p.D91H 0.26 tolerated(0.06) possibly_damaging(0.555) TCGA-EM-A3FP-01 6 32135285 32135285 C T EGFL8 Silent p.A229A 0.34 TCGA-EM-A3FP-01 6 33283858 33283858 G T ZBTB22 Missense_Mutation p.A279D 0.30 tolerated(0.22) benign(0.004) TCGA-EM-A3FP-01 7 1516466 1516466 C G INTS1 Missense_Mutation p.C1676S 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-EM-A3FP-01 7 72992835 72992835 C A TBL2 Missense_Mutation p.L15F 0.32 tolerated(0.29) benign(0.002) TCGA-EM-A3FP-01 8 144941609 144941609 C T EPPK1 Missense_Mutation p.G1938E 0.06 probably_damaging(1) TCGA-EM-A3FQ-01 12 126138656 126138656 G A TMEM132B Silent p.P879P 0.31 TCGA-EM-A3FQ-01 14 44974999 44974999 G A FSCB Missense_Mutation p.P398S 0.10 tolerated(0.44) possibly_damaging(0.794) TCGA-EM-A3FQ-01 8 41655108 41655108 G A ANK1 Intron 0.07 TCGA-EM-A3FQ-01 X 91133712 91133712 G A PCDH11X Missense_Mutation p.V825I 0.30 tolerated(1) benign(0.009) TCGA-EM-A3FR-01 10 26508106 26508106 C T GAD2 Missense_Mutation p.L141F 0.10 deleterious(0) probably_damaging(0.997) TCGA-EM-A3FR-01 12 50050234 50050234 G A FMNL3 Nonsense_Mutation p.R280* 0.05 TCGA-EM-A3FR-01 17 43311541 43311541 G A FMNL1 Silent p.V196V 0.39 TCGA-EM-A3FR-01 17 47696667 47696667 G C SPOP Missense_Mutation p.P94R 0.33 tolerated(0.15) benign(0.203) TCGA-EM-A3FR-01 17 76973279 76973279 T C LGALS3BP 5'UTR 0.12 TCGA-EM-A3FR-01 17 80043235 80043235 A T FASN Missense_Mutation p.V1389E 0.22 deleterious(0) probably_damaging(0.982) TCGA-EM-A3FR-01 19 9074980 9074980 T C MUC16 Missense_Mutation p.T4156A 0.16 unknown(0) TCGA-EM-A3FR-01 1 180849246 180849246 G A XPR1 Missense_Mutation p.E615K 0.47 deleterious(0) probably_damaging(1) TCGA-EM-A3FR-01 2 233990613 233990613 A T INPP5D Missense_Mutation p.S170C 0.19 tolerated(0.07) benign(0.004) TCGA-EM-A3FR-01 2 9463306 9463306 C G ASAP2 Missense_Mutation p.T176S 0.39 tolerated(0.24) possibly_damaging(0.541) TCGA-EM-A3FR-01 5 150278070 150278070 T C ZNF300 Missense_Mutation p.E37G 0.15 deleterious(0) possibly_damaging(0.453) TCGA-EM-A3FR-01 6 160225058 160225058 G C PNLDC1 Missense_Mutation p.E93Q 0.35 tolerated(0.15) possibly_damaging(0.817) TCGA-EM-A3FR-01 8 133899146 133899149 TGAA - TG Frame_Shift_Del p.N511Efs*15 0.49 TCGA-EM-A3FR-01 8 49832563 49832563 C T SNAI2 Missense_Mutation p.A173T 0.40 deleterious(0) probably_damaging(1) TCGA-EM-A3FR-01 9 122075649 122075649 T C BRINP1 5'UTR 0.06 TCGA-EM-A3FR-01 9 130106562 130106562 A G GARNL3 Missense_Mutation p.K434E 0.06 tolerated(0.22) benign(0.176) TCGA-EM-A3FR-01 9 130253549 130253549 A G LRSAM1 Missense_Mutation p.K493R 0.05 tolerated(1) benign(0.017) TCGA-EM-A3FR-01 X 135106617 135106617 G C SLC9A6 Missense_Mutation p.A531P 0.27 tolerated(1) benign(0.005) TCGA-EM-A3FR-01 X 54776381 54776381 G A ITIH6 Missense_Mutation p.R1297C 0.06 tolerated(0.08) benign(0.003) TCGA-EM-A3O3-01 10 112649373 112649373 A G PDCD4 Missense_Mutation p.D287G 0.17 tolerated(0.05) benign(0.054) TCGA-EM-A3O3-01 10 34601219 34601219 A T PARD3 Intron 0.32 TCGA-EM-A3O3-01 10 81060655 81060655 C G ZMIZ1 Missense_Mutation p.P659A 0.33 possibly_damaging(0.621) TCGA-EM-A3O3-01 10 99498333 99498333 A G ZFYVE27 Silent p.P33P 0.32 TCGA-EM-A3O3-01 11 123886643 123886643 G A OR10G4 Missense_Mutation p.R121H 0.19 deleterious(0.02) benign(0.081) TCGA-EM-A3O3-01 11 1269180 1269180 C A MUC5B Silent p.T3690T 0.33 TCGA-EM-A3O3-01 11 55541409 55541409 C A OR5D13 Missense_Mutation p.L166I 0.27 tolerated(0.06) benign(0.314) TCGA-EM-A3O3-01 12 104153016 104153016 C A STAB2 Missense_Mutation p.L2405M 0.30 deleterious(0) possibly_damaging(0.558) TCGA-EM-A3O3-01 12 7848345 7848345 G A GDF3 5'UTR 0.33 TCGA-EM-A3O3-01 17 293075 293075 C T FAM101B Silent p.K105K 0.30 TCGA-EM-A3O3-01 17 3438882 3438882 C G TRPV3 Missense_Mutation p.E257Q 0.34 tolerated(0.52) benign(0.233) TCGA-EM-A3O3-01 17 36895858 36895858 G A PCGF2 Missense_Mutation p.R64W 0.26 deleterious(0) possibly_damaging(0.677) TCGA-EM-A3O3-01 17 61885116 61885116 G A DDX42 Missense_Mutation p.M293I 0.33 tolerated(1) benign(0.012) TCGA-EM-A3O3-01 17 78327805 78327805 G A RNF213 Intron 0.34 TCGA-EM-A3O3-01 18 77171140 77171140 G A NFATC1 Missense_Mutation p.G276S 0.36 tolerated(0.47) benign(0.014) TCGA-EM-A3O3-01 19 4498373 4498373 G A HDGFRP2 Silent p.P491P 0.28 TCGA-EM-A3O3-01 19 49979779 49979779 C T FLT3LG Missense_Mutation p.R100C 0.19 tolerated(0.05) probably_damaging(0.917) TCGA-EM-A3O3-01 19 50154329 50154329 A G SCAF1 Missense_Mutation p.Y228C 0.34 unknown(0) TCGA-EM-A3O3-01 19 52443516 52443516 C T ZNF613 Missense_Mutation p.L24F 0.39 deleterious(0.04) probably_damaging(0.999) TCGA-EM-A3O3-01 19 58868467 58868467 G C ZNF497 Missense_Mutation p.H179D 0.26 tolerated(0.41) benign(0.122) TCGA-EM-A3O3-01 1 149943019 149943019 G A OTUD7B Silent p.I82I 0.05 TCGA-EM-A3O3-01 1 151020356 151020356 C T C1orf56 Silent p.V11V 0.19 TCGA-EM-A3O3-01 1 179310209 179310209 C T SOAT1 Missense_Mutation p.P182S 0.45 tolerated(0.15) benign(0.044) TCGA-EM-A3O3-01 1 183520210 183520210 C T SMG7 Missense_Mutation p.S1066L 0.23 deleterious_low_confidence(0) benign(0.103) TCGA-EM-A3O3-01 1 220151901 220151910 TGATTGAATT - EPRS Frame_Shift_Del p.K1354Tfs*18 0.10 TCGA-EM-A3O3-01 1 228465534 228465534 A G OBSCN Silent p.E2707E 0.11 TCGA-EM-A3O3-01 1 6257756 6257760 AATCA - RPL22 Frame_Shift_Del p.D24Hfs*15 0.23 TCGA-EM-A3O3-01 1 90058676 90058676 A G LRRC8B 3'UTR 0.14 TCGA-EM-A3O3-01 20 11904148 11904148 C T BTBD3 Missense_Mutation p.T468I 0.24 tolerated(0.14) possibly_damaging(0.904) TCGA-EM-A3O3-01 20 25507167 25507167 G A NINL Silent p.C19C 0.41 TCGA-EM-A3O3-01 20 36869104 36869104 T C KIAA1755 Missense_Mutation p.R477G 0.07 deleterious(0) benign(0.008) TCGA-EM-A3O3-01 22 42557288 42557288 G C TCF20 3'UTR 0.24 TCGA-EM-A3O3-01 2 189452645 189452645 C T GULP1 Missense_Mutation p.P271L 0.32 deleterious(0) probably_damaging(0.999) TCGA-EM-A3O3-01 2 211457603 211457603 G A CPS1 Missense_Mutation p.G369R 0.29 deleterious(0) probably_damaging(0.992) TCGA-EM-A3O3-01 2 211457604 211457604 G A CPS1 Missense_Mutation p.G369E 0.29 deleterious(0) probably_damaging(0.984) TCGA-EM-A3O3-01 4 110617580 110617580 A T CASP6 Missense_Mutation p.L98H 0.45 tolerated(0.12) benign(0.002) TCGA-EM-A3O3-01 5 176311066 176311066 A G HK3 Silent p.L643L 0.38 TCGA-EM-A3O3-01 5 70800541 70800541 C T BDP1 Nonsense_Mutation p.Q779* 0.27 TCGA-EM-A3O3-01 6 51921515 51921515 G A PKHD1 Silent p.L558L 0.30 TCGA-EM-A3O3-01 7 138968642 138968642 C - UBN2 Frame_Shift_Del p.L999Wfs*16 0.32 TCGA-EM-A3O3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-EM-A3O3-01 7 20403260 20403260 A C ITGB8 Missense_Mutation p.E43A 0.37 tolerated(1) benign(0.036) TCGA-EM-A3O3-01 7 2582951 2582951 G A BRAT1 Silent p.P270P 0.36 TCGA-EM-A3O3-01 7 48086188 48086188 A C C7orf57 Missense_Mutation p.E161A 0.28 deleterious(0.01) possibly_damaging(0.716) TCGA-EM-A3O3-01 X 118215224 118215224 T C KIAA1210 3'UTR 0.29 TCGA-EM-A3O6-01 10 89717730 89717730 A T PTEN Missense_Mutation p.D252V 0.51 deleterious(0) probably_damaging(0.993) TCGA-EM-A3O6-01 12 99121092 99121092 A - APAF1 Frame_Shift_Del p.K1200Sfs*34 0.26 TCGA-EM-A3O6-01 19 15989555 15989555 G - CYP4F2 3'UTR 0.22 TCGA-EM-A3O6-01 19 58067868 58067868 T C ZNF550 5'Flank 0.13 TCGA-EM-A3O6-01 1 10713462 10713462 G A CASZ1 Silent p.A884A 0.35 TCGA-EM-A3O6-01 1 116929945 116929945 G A ATP1A1 Silent p.A73A 0.25 TCGA-EM-A3O6-01 1 203830776 203830776 T G SNRPE 5'UTR 0.34 TCGA-EM-A3O6-01 1 247264279 247264279 T G ZNF669 Silent p.S264S 0.06 TCGA-EM-A3O6-01 21 31709485 31709485 G C KRTAP27-1 Missense_Mutation p.P168A 0.04 tolerated(0.41) possibly_damaging(0.55) TCGA-EM-A3O6-01 2 152496938 152496938 G C NEB Missense_Mutation p.H2872Q 0.04 possibly_damaging(0.878) TCGA-EM-A3O6-01 3 47859529 47859529 C T DHX30 Nonsense_Mutation p.Q16* 0.19 TCGA-EM-A3O6-01 5 10390572 10390572 C T MARCH6 Missense_Mutation p.A179V 0.19 tolerated(0.29) benign(0.01) TCGA-EM-A3O6-01 5 149500817 149500817 C T PDGFRB Missense_Mutation p.G805S 0.31 tolerated(0.51) benign(0.173) TCGA-EM-A3O6-01 5 67592034 67592034 C G PIK3R1 Missense_Mutation p.P617R 0.26 deleterious(0) probably_damaging(0.98) TCGA-EM-A3O6-01 6 76551012 76551012 T C MYO6 Missense_Mutation p.Y245H 0.04 deleterious(0.01) unknown(0) TCGA-EM-A3O6-01 X 54048691 54048691 C A PHF8 Splice_Site p.X134_splice 0.26 TCGA-EM-A3O7-01 11 60695172 60695172 C G TMEM132A Silent p.A125A 0.09 TCGA-EM-A3O7-01 12 11149659 11149659 T C TAS2R20 Silent p.P272P 0.07 TCGA-EM-A3O7-01 12 41967097 41967097 G T PDZRN4 Missense_Mutation p.R839I 0.07 deleterious(0) probably_damaging(0.909) TCGA-EM-A3O7-01 14 103148316 103148316 G T RCOR1 Splice_Site p.X149_splice 0.05 TCGA-EM-A3O7-01 16 69366761 69366761 G - COG8 Frame_Shift_Del p.H480Ifs*31 0.26 TCGA-EM-A3O7-01 17 48271724 48271724 G A COL1A1 Silent p.L534L 0.51 TCGA-EM-A3O7-01 19 12430333 12430333 T C ZNF563 Missense_Mutation p.Y169C 0.35 deleterious(0.02) probably_damaging(0.977) TCGA-EM-A3O7-01 1 151377730 151377730 T A POGZ Missense_Mutation p.I1261F 0.04 tolerated(0.11) probably_damaging(0.998) TCGA-EM-A3O7-01 20 60990654 60990666 CAGGCAGGGTGGC - RBBP8NL Frame_Shift_Del p.A199Sfs*7 0.24 TCGA-EM-A3O7-01 2 175437077 175437077 C T WIPF1 Silent p.V152V 0.12 TCGA-EM-A3O7-01 6 133065566 133065566 A G VNN2 Missense_Mutation p.L479P 0.48 deleterious(0) probably_damaging(0.999) TCGA-EM-A3O7-01 6 33169616 33169616 T A SLC39A7 Missense_Mutation p.L169H 0.51 deleterious(0) probably_damaging(1) TCGA-EM-A3O7-01 6 54805631 54805631 C A FAM83B Nonsense_Mutation p.S621* 0.05 TCGA-EM-A3O7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-EM-A3O7-01 9 136213522 136213522 G A MED22 5'UTR 0.11 TCGA-EM-A3O8-01 10 104139192 104139192 G A GBF1 Splice_Site p.X1548_splice 0.05 TCGA-EM-A3O8-01 15 25425564 25425564 C T SNORD115-6 5'Flank 0.38 TCGA-EM-A3O8-01 16 3333758 3333758 C A ZNF263 5'UTR 0.11 TCGA-EM-A3O8-01 1 113234306 113234306 G T MOV10 Nonsense_Mutation p.E286* 0.44 TCGA-EM-A3O8-01 1 92941764 92941764 C T GFI1 Missense_Mutation p.G364D 0.15 deleterious(0) probably_damaging(0.982) TCGA-EM-A3O8-01 20 42344786 42344786 G A MYBL2 3'UTR 0.23 TCGA-EM-A3O8-01 3 119246609 119246609 C T CD80 3'UTR 0.05 TCGA-EM-A3O8-01 4 22737601 22737601 C T GBA3 Intron 0.09 TCGA-EM-A3O8-01 6 41557797 41557797 G A FOXP4 Missense_Mutation p.A416T 0.05 tolerated(1) benign(0.029) TCGA-EM-A3O8-01 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.38 deleterious(0) benign(0.411) TCGA-EM-A3O8-01 9 97063304 97063304 C T ZNF169 Silent p.C488C 0.44 TCGA-EM-A3O8-01 X 75648746 75648746 G A MAGEE1 Silent p.P141P 0.05 TCGA-EM-A3O9-01 11 105795388 105795388 C T GRIA4 Silent p.D580D 0.14 TCGA-EM-A3O9-01 11 5410737 5410737 C T OR51M1 Missense_Mutation p.H37Y 0.06 tolerated(1) possibly_damaging(0.763) TCGA-EM-A3O9-01 14 93717850 93717850 T C BTBD7 Missense_Mutation p.N634S 0.13 tolerated(1) benign(0) TCGA-EM-A3O9-01 16 2807800 2807800 G T SRRM2 Missense_Mutation p.Q123H 0.29 unknown(0) TCGA-EM-A3O9-01 17 37682293 37682293 G A CDK12 Missense_Mutation p.E1162K 0.22 possibly_damaging(0.779) TCGA-EM-A3O9-01 19 50940753 50940753 C T MYBPC2 Nonsense_Mutation p.Q163* 0.32 TCGA-EM-A3O9-01 2 73115548 73115548 G A SPR Missense_Mutation p.S137N 0.20 tolerated(0.33) benign(0.032) TCGA-EM-A3O9-01 2 84811124 84811124 T A DNAH6 Missense_Mutation p.I744N 0.20 deleterious(0) benign(0.179) TCGA-EM-A3O9-01 5 23524563 23524563 T A PRDM9 Nonsense_Mutation p.Y357* 0.07 TCGA-EM-A3O9-01 6 151726916 151726916 T G RMND1 Missense_Mutation p.H419P 0.18 deleterious(0) probably_damaging(0.998) TCGA-EM-A3O9-01 6 70964879 70964879 C T COL9A1 Missense_Mutation p.G529S 0.13 probably_damaging(0.998) TCGA-EM-A3O9-01 X 26157885 26157885 C A MAGEB18 Missense_Mutation p.N261K 0.06 deleterious(0) probably_damaging(0.952) TCGA-EM-A3OA-01 10 64973724 64973724 G A JMJD1C Nonsense_Mutation p.Q735* 0.15 TCGA-EM-A3OA-01 11 48286142 48286142 G A OR4X1 Missense_Mutation p.V244I 0.07 deleterious(0) probably_damaging(0.999) TCGA-EM-A3OA-01 12 49048239 49048239 C A KANSL2 Intron 0.17 TCGA-EM-A3OA-01 14 74111704 74111704 G T DNAL1 5'UTR 0.25 TCGA-EM-A3OA-01 16 30594124 30594124 G A ZNF785 Silent p.S325S 0.09 TCGA-EM-A3OA-01 16 81069737 81069737 G A ATMIN Missense_Mutation p.V88M 0.11 tolerated(0.05) benign(0.268) TCGA-EM-A3OA-01 17 79952715 79952715 C T ASPSCR1 Silent p.P131P 0.32 TCGA-EM-A3OA-01 17 8701591 8701591 C G MFSD6L Missense_Mutation p.R283P 0.09 deleterious(0.01) probably_damaging(0.987) TCGA-EM-A3OA-01 18 43532379 43532379 G A EPG5 Silent p.H413H 0.39 TCGA-EM-A3OA-01 19 48537535 48537535 G A CABP5 Missense_Mutation p.R145W 0.07 deleterious(0) benign(0.291) TCGA-EM-A3OA-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.46 deleterious(0.01) benign(0.045) TCGA-EM-A3OA-01 20 32026782 32026782 A G SNTA1 Silent p.L121L 0.20 TCGA-EM-A3OA-01 22 38374039 38374039 G A SOX10 Missense_Mutation p.R178W 0.12 deleterious(0) probably_damaging(0.988) TCGA-EM-A3OA-01 2 26654829 26654829 C T DRC1 Silent p.C281C 0.11 TCGA-EM-A3OA-01 3 109056366 109056366 C T DPPA4 5'UTR 0.17 TCGA-EM-A3OA-01 3 52391973 52391973 C T DNAH1 Missense_Mutation p.T1347M 0.04 benign(0.149) TCGA-EM-A3OA-01 4 114264269 114264269 A G ANK2 Missense_Mutation p.K1407E 0.39 probably_damaging(0.999) TCGA-EM-A3OA-01 5 138209408 138209408 A G LRRTM2 Missense_Mutation p.I281T 0.03 tolerated(1) benign(0.002) TCGA-EM-A3OA-01 6 151161206 151161206 C T PLEKHG1 Missense_Mutation p.T1111M 0.42 tolerated_low_confidence(0.15) possibly_damaging(0.661) TCGA-EM-A3OA-01 7 31126076 31126076 T C ADCYAP1R1 Missense_Mutation p.Y250H 0.06 deleterious(0.01) probably_damaging(0.997) TCGA-EM-A3OA-01 9 128001313 128001313 A G HSPA5 Silent p.S301S 0.57 TCGA-EM-A3OA-01 X 152086657 152086657 C A ZNF185 Silent p.S130S 0.17 TCGA-EM-A3OB-01 12 96354366 96354366 C T AMDHD1 Missense_Mutation p.H260Y 0.07 deleterious(0) probably_damaging(1) TCGA-EM-A3OB-01 14 106369475 106369475 T C IGHD4-11 Silent p.L5L 0.27 TCGA-EM-A3OB-01 16 30749945 30749945 A G SRCAP Missense_Mutation p.R2862G 0.05 unknown(0) TCGA-EM-A3OB-01 17 18023164 18023164 C T MYO15A Silent p.D350D 0.06 TCGA-EM-A3OB-01 17 7604998 7604998 G A WRAP53 Silent p.S282S 0.47 TCGA-EM-A3OB-01 19 10114264 10114264 G T COL5A3 Missense_Mutation p.P276T 0.07 unknown(0) TCGA-EM-A3OB-01 19 51537891 51537891 C A KLK12 5'UTR 0.11 TCGA-EM-A3OB-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.44 tolerated(0.06) benign(0.006) TCGA-EM-A3OB-01 4 71555625 71555625 A G UTP3 Missense_Mutation p.I411V 0.46 tolerated(0.18) possibly_damaging(0.773) TCGA-EM-A3OB-01 X 53268422 53268422 A T IQSEC2 Missense_Mutation p.S1024T 0.36 deleterious(0.02) benign(0.111) TCGA-EM-A3ST-01 12 54339115 54339115 C T HOXC13 3'UTR 0.48 TCGA-EM-A3ST-01 15 77907884 77907884 C T LINGO1 Missense_Mutation p.R122Q 0.33 tolerated(0.21) benign(0.053) TCGA-EM-A3ST-01 15 90349592 90349592 G A ANPEP Missense_Mutation p.R75C 0.06 deleterious(0) probably_damaging(1) TCGA-EM-A3ST-01 16 19883140 19883140 G A GPRC5B Missense_Mutation p.A343V 0.32 deleterious(0.01) possibly_damaging(0.627) TCGA-EM-A3ST-01 16 19883141 19883141 C A GPRC5B Missense_Mutation p.A343S 0.31 tolerated(0.51) benign(0.042) TCGA-EM-A3ST-01 16 46629511 46629511 T G SHCBP1 Missense_Mutation p.T473P 0.49 deleterious(0) benign(0.175) TCGA-EM-A3ST-01 17 38128401 38128401 T A GSDMA Missense_Mutation p.N225K 0.55 tolerated(0.65) benign(0.016) TCGA-EM-A3ST-01 17 43321229 43321229 G A FMNL1 Missense_Mutation p.R762H 0.44 tolerated(0.1) benign(0.36) TCGA-EM-A3ST-01 17 80684416 80684421 ATGGAC - FN3KRP In_Frame_Del p.D178_M179del 0.41 TCGA-EM-A3ST-01 19 14024093 14024093 G A CC2D1A Missense_Mutation p.R164Q 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-EM-A3ST-01 19 1877106 1877106 G C ABHD17A 3'UTR 0.50 TCGA-EM-A3ST-01 19 9013858 9013858 G A MUC16 Silent p.L12844L 0.12 TCGA-EM-A3ST-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.46 deleterious(0.01) benign(0.045) TCGA-EM-A3ST-01 1 159906610 159906610 G A IGSF9 Silent p.S163S 0.38 TCGA-EM-A3ST-01 1 39854046 39854046 G A MACF1 Missense_Mutation p.A3116T 0.50 benign(0.087) TCGA-EM-A3ST-01 22 39414360 39414360 C T APOBEC3C Silent p.L181L 0.39 TCGA-EM-A3ST-01 2 179441971 179441971 C A TTN Nonsense_Mutation p.E23031* 0.09 TCGA-EM-A3ST-01 3 133558368 133558368 G A RAB6B Missense_Mutation p.T128M 0.43 deleterious(0.01) probably_damaging(0.979) TCGA-EM-A3ST-01 3 44948680 44948680 A T TGM4 Nonsense_Mutation p.K439* 0.09 TCGA-EM-A3ST-01 4 25160718 25160718 T C SEPSECS Silent p.P42P 0.34 TCGA-EM-A3ST-01 7 66767840 66767840 G C STAG3L4 RNA 0.58 TCGA-EM-A3ST-01 9 127998975 127998975 T C HSPA5 Missense_Mutation p.K621E 0.41 tolerated_low_confidence(0.25) benign(0.068) TCGA-EM-A3ST-01 9 15579022 15579022 G A CCDC171 Splice_Site p.X118_splice 0.40 TCGA-EM-A3ST-01 9 96000545 96000545 C T WNK2 Missense_Mutation p.H422Y 0.09 unknown(0) TCGA-EM-A3ST-01 X 20148692 20148692 C A EIF1AX Missense_Mutation p.G124V 0.31 deleterious(0.01) unknown(0) TCGA-EM-A3ST-01 X 20148693 20148693 C A EIF1AX Nonsense_Mutation p.G124* 0.30 TCGA-EM-A3SU-01 10 26994255 26994255 G A PDSS1 Missense_Mutation p.E90K 0.12 tolerated(0.12) benign(0.354) TCGA-EM-A3SU-01 13 110436139 110436139 C A IRS2 Missense_Mutation p.E754D 0.33 tolerated(0.19) benign(0.113) TCGA-EM-A3SU-01 13 23913960 23913960 C T SACS Missense_Mutation p.S1352N 0.10 probably_damaging(0.985) TCGA-EM-A3SU-01 15 65490925 65490925 C T CILP Missense_Mutation p.E567K 0.09 deleterious(0.04) benign(0.242) TCGA-EM-A3SU-01 16 4834039 4834039 C T SEPT12 Silent p.E135E 0.31 TCGA-EM-A3SU-01 17 33279009 33279009 C T CCT6B Missense_Mutation p.E192K 0.10 deleterious(0) possibly_damaging(0.606) TCGA-EM-A3SU-01 17 33288338 33288338 G A CCT6B Silent p.C25C 0.08 TCGA-EM-A3SU-01 21 30693752 30693752 G A BACH1 Missense_Mutation p.V51M 0.06 tolerated(0.06) benign(0.219) TCGA-EM-A3SU-01 3 160967245 160967245 T G NMD3 Missense_Mutation p.L403V 0.23 deleterious(0.01) benign(0.324) TCGA-EM-A3SU-01 3 39185421 39185421 G A CSRNP1 Missense_Mutation p.R299C 0.10 deleterious(0) probably_damaging(0.975) TCGA-EM-A3SU-01 5 134153187 134153187 A G DDX46 Missense_Mutation p.D871G 0.37 tolerated(0.47) benign(0.007) TCGA-EM-A3SU-01 6 4032325 4032325 A G PRPF4B Missense_Mutation p.T192A 0.04 tolerated_low_confidence(0.18) benign(0.1) TCGA-EM-A3SU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-EM-A3SU-01 7 150037252 150037252 C T RARRES2 Silent p.L72L 0.04 TCGA-EM-A3SX-01 11 100221518 100221518 G C CNTN5 Missense_Mutation p.G1039A 0.39 deleterious(0.04) probably_damaging(1) TCGA-EM-A3SX-01 11 49831352 49831352 G C RP11-707M1.1 RNA 0.33 TCGA-EM-A3SX-01 11 5172741 5172741 G A OR52A1 Missense_Mutation p.P287S 0.48 deleterious(0.01) possibly_damaging(0.901) TCGA-EM-A3SX-01 11 55735160 55735160 C A OR10AG1 Missense_Mutation p.R260S 0.21 deleterious(0.05) benign(0.013) TCGA-EM-A3SX-01 11 56380282 56380282 C A OR5M1 Missense_Mutation p.G233C 0.34 deleterious(0) probably_damaging(1) TCGA-EM-A3SX-01 11 74880293 74880293 G A SLCO2B1 Missense_Mutation p.G175D 0.07 tolerated(0.61) benign(0.023) TCGA-EM-A3SX-01 12 72013900 72013900 C T ZFC3H1 Missense_Mutation p.E1619K 0.35 deleterious(0.04) benign(0.298) TCGA-EM-A3SX-01 13 46537862 46537862 C G ZC3H13 3'UTR 0.22 TCGA-EM-A3SX-01 14 21992041 21992041 C T SALL2 Silent p.V607V 0.43 TCGA-EM-A3SX-01 14 21992320 21992320 C T SALL2 Missense_Mutation p.M514I 0.58 tolerated(0.07) probably_damaging(0.943) TCGA-EM-A3SX-01 16 24801369 24801369 C T TNRC6A Missense_Mutation p.S469L 0.44 tolerated(0.06) benign(0.012) TCGA-EM-A3SX-01 17 65908048 65908048 C T BPTF Missense_Mutation p.P1350S 0.12 benign(0.001) TCGA-EM-A3SX-01 19 48836571 48836571 C T TMEM143 Missense_Mutation p.G429R 0.22 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-EM-A3SX-01 1 156628485 156628485 G A BCAN Missense_Mutation p.R863H 0.06 tolerated(0.5) benign(0.001) TCGA-EM-A3SX-01 1 208269445 208269445 C T PLXNA2 Silent p.L637L 0.34 TCGA-EM-A3SX-01 1 3552559 3552559 A G WRAP73 Silent p.I184I 0.12 TCGA-EM-A3SX-01 2 152108098 152108098 C T RBM43 Silent p.L132L 0.33 TCGA-EM-A3SX-01 2 216214475 216214475 C G ATIC 3'UTR 0.33 TCGA-EM-A3SX-01 2 225721649 225721649 G A DOCK10 Missense_Mutation p.S579L 0.43 deleterious(0.05) possibly_damaging(0.756) TCGA-EM-A3SX-01 2 33589390 33589391 - A LTBP1 Frame_Shift_Ins p.R1505Kfs*7 0.30 TCGA-EM-A3SX-01 2 49190947 49190947 C T FSHR Missense_Mutation p.C338Y 0.45 deleterious(0.02) possibly_damaging(0.749) TCGA-EM-A3SX-01 4 74350072 74350072 G A AFM Missense_Mutation p.A79T 0.32 deleterious(0.03) probably_damaging(0.909) TCGA-EM-A3SX-01 6 19838858 19838858 G C ID4 Nonstop_Mutation p.*162Sext*10 0.36 TCGA-EM-A3SX-01 6 43039904 43039904 C G KLC4 Missense_Mutation p.L485V 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-EM-A3SX-01 6 80732143 80732143 C G TTK Nonsense_Mutation p.S404* 0.38 TCGA-EM-A3SX-01 6 83074982 83074982 C T TPBG Nonsense_Mutation p.Q102* 0.43 TCGA-EM-A3SX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-EM-A3SX-01 7 142326961 142326961 C T TRBV19 Missense_Mutation p.R87W 0.08 deleterious(0.02) benign(0.067) TCGA-EM-A3SX-01 9 20764983 20764983 C G FOCAD Missense_Mutation p.Q204E 0.44 tolerated(0.35) benign(0.014) TCGA-EM-A3SX-01 9 84603866 84603866 G A SPATA31D1 Missense_Mutation p.V45M 0.36 tolerated(0.16) benign(0.164) TCGA-EM-A3SX-01 X 106224676 106224676 C G MORC4 Missense_Mutation p.D236H 0.30 deleterious(0) possibly_damaging(0.71) TCGA-EM-A3SX-01 X 12905565 12905565 C G TLR7 Missense_Mutation p.F646L 0.37 deleterious(0) probably_damaging(0.985) TCGA-EM-A3SX-01 X 136113520 136113520 G A GPR101 Missense_Mutation p.T105M 0.10 deleterious(0.01) probably_damaging(0.991) TCGA-EM-A3SX-01 X 30322801 30322801 C T NR0B1 Silent p.L436L 0.40 TCGA-EM-A3SY-01 11 130785254 130785254 C T SNX19 Missense_Mutation p.R194Q 0.16 tolerated(0.64) benign(0.025) TCGA-EM-A3SY-01 11 58126103 58126103 T A OR5B17 Missense_Mutation p.Y147F 0.33 deleterious_low_confidence(0.02) possibly_damaging(0.723) TCGA-EM-A3SY-01 12 13102506 13102514 CTGTCTACA - GPRC5D In_Frame_Del p.C269_Q271del 0.12 TCGA-EM-A3SY-01 14 105715555 105715555 G A BTBD6 Missense_Mutation p.G93R 0.24 tolerated(0.26) possibly_damaging(0.57) TCGA-EM-A3SY-01 15 31779437 31779437 T C OTUD7A Missense_Mutation p.Y437C 0.07 deleterious(0) probably_damaging(0.995) TCGA-EM-A3SY-01 17 78796978 78796978 C T RPTOR Missense_Mutation p.P364L 0.39 deleterious(0) probably_damaging(0.991) TCGA-EM-A3SY-01 19 58772400 58772402 TGG - ZNF544 In_Frame_Del p.M143_V144delinsI 0.30 TCGA-EM-A3SY-01 1 235955049 235955049 T A LYST Missense_Mutation p.K1498M 0.19 deleterious(0) possibly_damaging(0.807) TCGA-EM-A3SY-01 21 45222152 45222152 C T RRP1 Intron 0.53 TCGA-EM-A3SY-01 22 38531030 38531030 C T PLA2G6 Missense_Mutation p.G287R 0.11 deleterious(0) probably_damaging(0.936) TCGA-EM-A3SY-01 2 145161544 145161544 G A ZEB2 Missense_Mutation p.T249M 0.38 deleterious(0) probably_damaging(1) TCGA-EM-A3SY-01 2 99256429 99256429 G A MGAT4A Silent p.I388I 0.31 TCGA-EM-A3SY-01 3 38592647 38592647 C T SCN5A Missense_Mutation p.R1739Q 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-EM-A3SY-01 X 154197827 154197827 C G F8 Missense_Mutation p.G263A 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-EM-A3SY-01 X 79951458 79951458 G - BRWD3 Frame_Shift_Del p.V1035Cfs*23 0.32 TCGA-EM-A3SZ-01 10 38407191 38407191 C G ZNF37A Missense_Mutation p.T371S 0.05 tolerated(0.18) probably_damaging(0.943) TCGA-EM-A3SZ-01 11 18195358 18195359 TT A MRGPRX4 Frame_Shift_Del p.L187Yfs*25 0.13 TCGA-EM-A3SZ-01 11 3022318 3022318 G A CARS 3'UTR 0.37 TCGA-EM-A3SZ-01 12 132472421 132472421 G T EP400 Missense_Mutation p.A799S 0.12 unknown(0) TCGA-EM-A3SZ-01 14 57863556 57863556 G T NAA30 Missense_Mutation p.M286I 0.18 deleterious(0.04) possibly_damaging(0.665) TCGA-EM-A3SZ-01 15 63102170 63102170 C A TLN2 Missense_Mutation p.A2237D 0.15 deleterious(0.01) possibly_damaging(0.496) TCGA-EM-A3SZ-01 15 65499273 65499273 G A CILP Missense_Mutation p.R91W 0.11 deleterious(0.03) benign(0.001) TCGA-EM-A3SZ-01 16 30794482 30794482 C A ZNF629 Missense_Mutation p.L389F 0.11 deleterious(0) probably_damaging(1) TCGA-EM-A3SZ-01 16 84882990 84882990 G A CRISPLD2 Splice_Site p.X120_splice 0.41 TCGA-EM-A3SZ-01 19 44660699 44660699 C A ZNF234 Missense_Mutation p.T177K 0.13 tolerated(0.75) benign(0.038) TCGA-EM-A3SZ-01 19 47725046 47725046 C A BBC3 Missense_Mutation p.R233L 0.19 deleterious_low_confidence(0.01) benign(0.302) TCGA-EM-A3SZ-01 1 114952912 114952912 T G TRIM33 Missense_Mutation p.L696F 0.28 tolerated(0.16) benign(0.011) TCGA-EM-A3SZ-01 1 116233873 116233873 T G VANGL1 Missense_Mutation p.L483R 0.13 deleterious(0) probably_damaging(1) TCGA-EM-A3SZ-01 1 94512531 94512531 G A ABCA4 Silent p.Y954Y 0.09 TCGA-EM-A3SZ-01 2 166900318 166900318 A C SCN1A Missense_Mutation p.F635C 0.08 tolerated(0.08) benign(0.423) TCGA-EM-A3SZ-01 2 166900322 166900322 C G SCN1A Missense_Mutation p.V634L 0.08 tolerated(0.44) benign(0.006) TCGA-EM-A3SZ-01 3 179051912 179051913 - A ZNF639 Frame_Shift_Ins p.N388Kfs*3 0.16 TCGA-EM-A3SZ-01 4 7985069 7985069 G C ABLIM2 Missense_Mutation p.I582M 0.50 deleterious(0) possibly_damaging(0.628) TCGA-EM-A3SZ-01 5 112175616 112175616 C A APC Missense_Mutation p.P1442H 0.07 probably_damaging(0.999) TCGA-EM-A3SZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-EM-A3SZ-01 9 124936866 124936866 G T MORN5 Missense_Mutation p.R133S 0.08 tolerated(0.08) possibly_damaging(0.721) TCGA-EM-A3SZ-01 9 79325961 79325961 T C PRUNE2 Missense_Mutation p.N410S 0.10 tolerated(0.23) benign(0.006) TCGA-EM-A3SZ-01 9 82321667 82321667 A G TLE4 Silent p.P263P 0.34 TCGA-EM-A3SZ-01 X 140994614 140994614 A T MAGEC1 Missense_Mutation p.Q475L 0.32 deleterious_low_confidence(0) benign(0.069) TCGA-EM-A4FF-01 17 34842531 34842531 C T ZNHIT3 5'UTR 0.06 TCGA-EM-A4FF-01 17 37188177 37188177 C A CTD-2206N4.2 5'Flank 0.07 TCGA-EM-A4FF-01 1 110607406 110607406 G A ALX3 Missense_Mutation p.H133Y 0.33 deleterious(0.03) benign(0.017) TCGA-EM-A4FF-01 1 160011624 160011624 C G KCNJ10 Missense_Mutation p.Q233H 0.24 deleterious(0.03) probably_damaging(1) TCGA-EM-A4FF-01 2 109292399 109292399 A G LIMS1 Missense_Mutation p.K249R 0.08 tolerated(0.12) possibly_damaging(0.631) TCGA-EM-A4FF-01 2 220097799 220097799 A G ANKZF1 Splice_Site p.X187_splice 0.34 TCGA-EM-A4FF-01 2 220413838 220413838 G A TMEM198 Intron 0.10 TCGA-EM-A4FF-01 3 93802955 93802956 AT - NSUN3 Frame_Shift_Del p.I43Tfs*14 0.17 TCGA-EM-A4FF-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-EM-A4FF-01 9 35061662 35061662 A G VCP Missense_Mutation p.I369T 0.11 deleterious(0) probably_damaging(1) TCGA-EM-A4FF-01 X 101908769 101908769 C T GPRASP1 5'UTR 0.07 TCGA-EM-A4FF-01 X 119660702 119660702 G T CUL4B Missense_Mutation p.L886I 0.06 tolerated(0.22) benign(0.229) TCGA-EM-A4FF-01 X 153698460 153698460 G A PLXNA3 Missense_Mutation p.G1646S 0.09 tolerated(0.07) probably_damaging(1) TCGA-EM-A4FH-01 11 71932697 71932697 C T FOLR2 Missense_Mutation p.A220V 0.41 deleterious(0.02) benign(0.226) TCGA-EM-A4FH-01 15 69222942 69222942 G A SPESP1 5'UTR 0.09 TCGA-EM-A4FH-01 16 2013180 2013180 C A RPS2 Missense_Mutation p.Q115H 0.50 deleterious(0.02) probably_damaging(0.959) TCGA-EM-A4FH-01 19 37367967 37367967 C T ZNF345 Nonsense_Mutation p.R79* 0.42 TCGA-EM-A4FH-01 19 50474626 50474626 G T SIGLEC16 RNA 0.32 TCGA-EM-A4FH-01 1 246810626 246810626 A T CNST Missense_Mutation p.T375S 0.47 deleterious(0.01) benign(0.442) TCGA-EM-A4FH-01 1 47144234 47144234 G T EFCAB14 Missense_Mutation p.L463I 0.30 deleterious(0.02) probably_damaging(0.912) TCGA-EM-A4FH-01 1 47144235 47144235 G A EFCAB14 Silent p.S462S 0.30 TCGA-EM-A4FH-01 4 74904084 74904084 C T CXCL3 Silent p.L49L 0.08 TCGA-EM-A4FH-01 9 4118110 4118110 T G GLIS3 Silent p.P456P 0.26 TCGA-EM-A4FH-01 X 47039364 47039364 C A RBM10 Silent p.S329S 0.12 TCGA-EM-A4FK-01 10 49658360 49658360 A G ARHGAP22 Silent p.T620T 0.18 TCGA-EM-A4FK-01 11 6653563 6653563 T G DCHS1 Silent p.L1060L 0.36 TCGA-EM-A4FK-01 14 94067104 94067104 C T UNC79 Missense_Mutation p.P1011S 0.26 tolerated(0.36) probably_damaging(0.999) TCGA-EM-A4FK-01 16 89345698 89345698 T C ANKRD11 Missense_Mutation p.I2418V 0.27 possibly_damaging(0.451) TCGA-EM-A4FK-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.37 tolerated(0.06) benign(0.006) TCGA-EM-A4FK-01 1 185834992 185834992 T C HMCN1 Silent p.N206N 0.33 TCGA-EM-A4FK-01 1 89273120 89273120 A G PKN2 Missense_Mutation p.D643G 0.05 tolerated(0.44) benign(0.017) TCGA-EM-A4FK-01 20 34241438 34241438 G A RBM12 Missense_Mutation p.R603C 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-EM-A4FK-01 22 50472804 50472804 C T TTLL8 Missense_Mutation p.A357T 0.09 deleterious(0) probably_damaging(0.992) TCGA-EM-A4FK-01 5 145439568 145439568 C T SH3RF2 Silent p.A565A 0.05 TCGA-EM-A4FK-01 6 32015643 32015643 C T TNXB 5'Flank 0.42 TCGA-EM-A4FM-01 10 86014089 86014089 A T RGR Missense_Mutation p.T178S 0.42 deleterious(0.04) benign(0.022) TCGA-EM-A4FM-01 11 117094847 117094847 T C PCSK7 Missense_Mutation p.N334S 0.07 tolerated(0.44) benign(0.088) TCGA-EM-A4FM-01 11 66626537 66626537 G A LRFN4 Missense_Mutation p.S441N 0.32 tolerated(0.27) probably_damaging(0.937) TCGA-EM-A4FM-01 12 58168511 58168511 C T METTL21B Intron 0.22 TCGA-EM-A4FM-01 15 49081163 49081163 C A CEP152 Silent p.L336L 0.35 TCGA-EM-A4FM-01 16 30991489 30991489 A G SETD1A Missense_Mutation p.N1461S 0.32 unknown(0) TCGA-EM-A4FM-01 16 80638351 80638351 G C CDYL2 Silent p.L485L 0.30 TCGA-EM-A4FM-01 17 10443979 10443979 G C MYH2 Missense_Mutation p.P314A 0.16 tolerated(0.66) benign(0.001) TCGA-EM-A4FM-01 17 16612219 16612219 G A CCDC144A Missense_Mutation p.G283D 0.39 tolerated(0.27) probably_damaging(0.959) TCGA-EM-A4FM-01 17 62265588 62265588 G A TEX2 Silent p.S795S 0.39 TCGA-EM-A4FM-01 17 78343413 78343413 T C RNF213 Silent p.I4089I 0.36 TCGA-EM-A4FM-01 19 41631475 41631475 C T CYP2F1 Silent p.P410P 0.26 TCGA-EM-A4FM-01 19 51189611 51189611 G T SHANK1 Missense_Mutation p.N820K 0.31 possibly_damaging(0.727) TCGA-EM-A4FM-01 1 16475507 16475507 C T EPHA2 Silent p.P63P 0.05 TCGA-EM-A4FM-01 1 214822144 214822144 C T CENPF Silent p.L2653L 0.06 TCGA-EM-A4FM-01 21 45507741 45507741 G A TRAPPC10 Missense_Mutation p.A901T 0.08 tolerated(0.71) benign(0) TCGA-EM-A4FM-01 21 45837906 45837906 G A TRPM2 Silent p.P1081P 0.33 TCGA-EM-A4FM-01 21 47855938 47855938 G A PCNT Missense_Mutation p.R2958H 0.04 benign(0) TCGA-EM-A4FM-01 3 185337150 185337150 C - SENP2 Frame_Shift_Del p.H436Mfs*11 0.23 TCGA-EM-A4FM-01 5 140237165 140237165 C T PCDHA10 Missense_Mutation p.A511V 0.30 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-EM-A4FM-01 5 156214 156214 A T PLEKHG4B Missense_Mutation p.E390V 0.33 deleterious(0) benign(0.379) TCGA-EM-A4FM-01 5 52285331 52285331 G A ITGA2 Silent p.L11L 0.05 TCGA-EM-A4FM-01 6 35473554 35473554 A G TULP1 Missense_Mutation p.L359P 0.48 deleterious(0.03) probably_damaging(1) TCGA-EM-A4FM-01 6 51892687 51892687 G A PKHD1 Missense_Mutation p.L1190F 0.56 deleterious(0.04) probably_damaging(0.958) TCGA-EM-A4FM-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-EM-A4FM-01 9 138379139 138379139 C T PPP1R26 Missense_Mutation p.P928L 0.12 tolerated(0.18) benign(0.031) TCGA-EM-A4FM-01 X 148798323 148798323 G A MAGEA11 Missense_Mutation p.E393K 0.35 deleterious(0) probably_damaging(1) TCGA-EM-A4FM-01 X 27998790 27998790 A G DCAF8L1 Missense_Mutation p.I221T 0.20 deleterious(0.05) benign(0.051) TCGA-EM-A4FM-01 X 41058005 41058005 T C USP9X Splice_Site p.X1535_splice 0.36 TCGA-EM-A4FM-01 X 70327615 70327615 G A IL2RG Missense_Mutation p.P361S 0.35 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-EM-A4FN-01 10 90490787 90490787 A G LIPK Missense_Mutation p.S91G 0.38 tolerated(0.08) benign(0.02) TCGA-EM-A4FN-01 11 105732820 105732820 G T GRIA4 Silent p.V186V 0.25 TCGA-EM-A4FN-01 12 26220530 26220530 C G RASSF8 Missense_Mutation p.T341S 0.08 deleterious(0.05) probably_damaging(0.956) TCGA-EM-A4FN-01 13 76427339 76427339 T A LMO7 Missense_Mutation p.S1259R 0.40 deleterious(0) probably_damaging(0.998) TCGA-EM-A4FN-01 14 105413628 105413628 G A AHNAK2 Silent p.H2720H 0.46 TCGA-EM-A4FN-01 18 60645971 60645971 C T PHLPP1 Silent p.S1487S 0.13 TCGA-EM-A4FN-01 1 12907980 12907980 C T HNRNPCL1 Missense_Mutation p.V55I 0.13 tolerated(0.1) benign(0.199) TCGA-EM-A4FN-01 1 228588714 228588714 A T TRIM11 Missense_Mutation p.I229N 0.44 deleterious(0) possibly_damaging(0.713) TCGA-EM-A4FN-01 21 47805846 47805846 G A PCNT Missense_Mutation p.A1138T 0.05 benign(0.001) TCGA-EM-A4FN-01 2 1497756 1497756 C T TPO Missense_Mutation p.P651S 0.37 deleterious(0) probably_damaging(0.987) TCGA-EM-A4FN-01 2 228399693 228399693 C A AGFG1 Missense_Mutation p.S410Y 0.33 deleterious(0.01) possibly_damaging(0.883) TCGA-EM-A4FN-01 2 233347145 233347145 G A ECEL1 Silent p.Y593Y 0.38 TCGA-EM-A4FN-01 6 26448653 26448653 C A BTN3A3 Missense_Mutation p.T298K 0.42 tolerated(1) benign(0.002) TCGA-EM-A4FN-01 6 73110295 73110295 T A RIMS1 Missense_Mutation p.I1653N 0.36 deleterious(0) possibly_damaging(0.827) TCGA-EM-A4FN-01 7 14028333 14028333 C T ETV1 Intron 0.34 TCGA-EM-A4FN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-EM-A4FO-01 12 121001322 121001322 A G RNF10 Missense_Mutation p.N476S 0.22 tolerated(0.82) benign(0) TCGA-EM-A4FO-01 14 100615601 100615601 C T DEGS2 Missense_Mutation p.V177I 0.23 tolerated(0.77) benign(0.145) TCGA-EM-A4FO-01 17 34233869 34233869 G T AC015849.16 RNA 0.14 TCGA-EM-A4FO-01 18 70417314 70417314 G A NETO1 Silent p.H508H 0.16 TCGA-EM-A4FO-01 19 577919 577919 G C BSG Missense_Mutation p.W71C 0.24 deleterious(0) probably_damaging(1) TCGA-EM-A4FO-01 1 160109744 160109744 C T ATP1A2 Nonsense_Mutation p.R1002* 0.12 TCGA-EM-A4FO-01 1 160523156 160523156 G A CD84 Missense_Mutation p.P258S 0.15 tolerated(1) benign(0.003) TCGA-EM-A4FO-01 20 25198164 25198164 C T ENTPD6 Silent p.G275G 0.15 TCGA-EM-A4FO-01 20 8639291 8639291 C A PLCB1 Missense_Mutation p.Q268K 0.15 tolerated(0.14) benign(0.029) TCGA-EM-A4FO-01 2 111556600 111556600 G C ACOXL Missense_Mutation p.C157S 0.10 deleterious(0.01) possibly_damaging(0.56) TCGA-EM-A4FO-01 4 2306946 2306946 C G ZFYVE28 Missense_Mutation p.G374A 0.15 tolerated_low_confidence(0.14) benign(0.023) TCGA-EM-A4FO-01 6 136599357 136599357 T A BCLAF1 Missense_Mutation p.N221I 0.06 deleterious(0) possibly_damaging(0.844) TCGA-EM-A4FO-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-EM-A4FO-01 7 66774113 66774113 T C STAG3L4 RNA 0.15 TCGA-EM-A4FO-01 9 34241443 34241443 G A UBAP1 Silent p.T204T 0.13 TCGA-EM-A4FO-01 9 8375990 8375990 C T PTPRD Missense_Mutation p.R1536H 0.16 tolerated(0.05) probably_damaging(0.997) TCGA-EM-A4FO-01 X 101770063 101770063 A T TMSB15A Missense_Mutation p.V10E 0.30 deleterious(0) probably_damaging(0.942) TCGA-EM-A4FO-01 X 48781191 48781191 T C OTUD5 Missense_Mutation p.M473V 0.22 tolerated(0.52) benign(0.001) TCGA-EM-A4FQ-01 11 62295440 62295440 C A AHNAK Missense_Mutation p.S2150I 0.03 benign(0.271) TCGA-EM-A4FQ-01 16 56782202 56782202 C T NUP93 Nonsense_Mutation p.Q15* 0.31 TCGA-EM-A4FQ-01 16 81095125 81095125 C T C16orf46 Missense_Mutation p.D277N 0.33 tolerated(0.13) possibly_damaging(0.833) TCGA-EM-A4FQ-01 19 11915465 11915465 C T ZNF491 5'UTR 0.41 TCGA-EM-A4FQ-01 19 4529683 4529683 G T PLIN5 Intron 0.13 TCGA-EM-A4FQ-01 1 36564482 36564482 C T COL8A2 Missense_Mutation p.G267E 0.52 deleterious(0) unknown(0) TCGA-EM-A4FQ-01 1 85028950 85028950 T C CTBS Missense_Mutation p.Y316C 0.32 deleterious(0) benign(0.291) TCGA-EM-A4FQ-01 3 30713340 30713340 A G TGFBR2 Missense_Mutation p.D247G 0.42 deleterious(0.02) possibly_damaging(0.576) TCGA-EM-A4FQ-01 5 135651397 135651397 G C TRPC7 Missense_Mutation p.T284R 0.29 deleterious(0) possibly_damaging(0.707) TCGA-EM-A4FQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-EM-A4FR-01 11 119243580 119243580 C T USP2 Missense_Mutation p.R204H 0.07 tolerated_low_confidence(0.09) benign(0.001) TCGA-EM-A4FR-01 16 19070964 19070964 C T TMC7 Intron 0.33 TCGA-EM-A4FR-01 3 140140038 140140038 G A CLSTN2 Missense_Mutation p.D237N 0.06 deleterious(0) probably_damaging(0.999) TCGA-EM-A4FR-01 6 168443303 168443303 G T KIF25 Missense_Mutation p.A298S 0.40 deleterious(0.02) probably_damaging(0.986) TCGA-EM-A4FR-01 6 7601664 7601664 G C SNRNP48 Missense_Mutation p.V168L 0.37 deleterious(0.03) probably_damaging(0.933) TCGA-EM-A4FR-01 9 141016186 141016186 C T CACNA1B Missense_Mutation p.S2252F 0.41 deleterious(0.01) possibly_damaging(0.854) TCGA-EM-A4FU-01 12 53715180 53715180 C T AAAS Missense_Mutation p.E24K 0.13 tolerated(0.24) benign(0.07) TCGA-EM-A4FU-01 19 42133313 42133313 C T CEACAM4 Missense_Mutation p.A7T 0.39 tolerated(0.12) benign(0.022) TCGA-EM-A4FU-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.27 tolerated(0.06) benign(0.006) TCGA-EM-A4FU-01 1 145561444 145561444 C T ANKRD35 Silent p.L378L 0.36 TCGA-EM-A4FU-01 1 6601950 6601950 G A NOL9 Nonsense_Mutation p.Q339* 0.07 TCGA-EM-A4FU-01 20 47864326 47864326 G A ZNFX1 Silent p.R1745R 0.05 TCGA-EM-A4FU-01 22 41677140 41677140 G A RANGAP1 5'UTR 0.90 TCGA-EM-A4FU-01 4 146697048 146697048 C G ZNF827 Missense_Mutation p.Q862H 0.05 deleterious(0.02) possibly_damaging(0.839) TCGA-EM-A4FV-01 10 1046799 1046799 C T GTPBP4 Silent p.F279F 0.07 TCGA-EM-A4FV-01 10 106035045 106035045 C - GSTO2 Frame_Shift_Del p.Y34Ifs*23 0.23 TCGA-EM-A4FV-01 11 124180036 124180036 C T OR8D1 Silent p.V209V 0.11 TCGA-EM-A4FV-01 12 110812081 110812081 C T ANAPC7 Silent p.E556E 0.10 TCGA-EM-A4FV-01 12 130184920 130184920 G A TMEM132D Missense_Mutation p.R135W 0.23 deleterious(0.02) benign(0.157) TCGA-EM-A4FV-01 12 25380277 25380277 G T KRAS Missense_Mutation p.Q61K 0.26 deleterious(0.01) benign(0.279) TCGA-EM-A4FV-01 12 25380278 25380278 A T KRAS Silent p.G60G 0.30 TCGA-EM-A4FV-01 13 86370229 86370229 C T SLITRK6 Missense_Mutation p.E139K 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-EM-A4FV-01 16 848566 848566 G A GNG13 3'UTR 0.14 TCGA-EM-A4FV-01 17 76697789 76697789 T A CYTH1 Missense_Mutation p.H134L 0.07 deleterious(0) possibly_damaging(0.545) TCGA-EM-A4FV-01 19 50165518 50165518 C T IRF3 Silent p.P223P 0.12 TCGA-EM-A4FV-01 19 53762045 53762045 C T VN1R2 Silent p.I139I 0.22 TCGA-EM-A4FV-01 19 7595248 7595248 C T MCOLN1 Missense_Mutation p.A479V 0.08 tolerated(0.17) benign(0.243) TCGA-EM-A4FV-01 1 153924016 153924016 G A CRTC2 Missense_Mutation p.S375F 0.14 deleterious(0) probably_damaging(0.982) TCGA-EM-A4FV-01 1 33745738 33745738 C T ZNF362 Silent p.S121S 0.27 TCGA-EM-A4FV-01 1 55349397 55349397 C T DHCR24 Missense_Mutation p.R94H 0.23 deleterious(0) probably_damaging(1) TCGA-EM-A4FV-01 1 79383543 79383543 C A ELTD1 Nonsense_Mutation p.G552* 0.05 TCGA-EM-A4FV-01 3 33420177 33420177 A G FBXL2 Missense_Mutation p.I299V 0.31 tolerated(0.27) benign(0.011) TCGA-EM-A4FV-01 3 93595969 93595969 G T PROS1 Missense_Mutation p.Q571K 0.21 tolerated(0.26) benign(0.013) TCGA-EM-A4FV-01 6 24416723 24416723 G C MRS2 Missense_Mutation p.W273S 0.20 deleterious(0.02) probably_damaging(0.965) TCGA-EM-A4FV-01 6 29591190 29591190 T G GABBR1 Silent p.R285R 0.20 TCGA-EM-A4FV-01 6 89808601 89808601 G C SRSF12 Missense_Mutation p.S161C 0.27 tolerated(0.09) possibly_damaging(0.869) TCGA-EM-A4FV-01 6 90082246 90082246 G T RRAGD Missense_Mutation p.L321I 0.30 deleterious(0.03) possibly_damaging(0.786) TCGA-EM-A4FV-01 7 112112868 112112868 G A IFRD1 Missense_Mutation p.M406I 0.14 tolerated(0.49) benign(0.038) TCGA-EM-A4FV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.12 deleterious(0) probably_damaging(0.967) TCGA-EM-A4FV-01 7 149462027 149462027 G A ZNF467 Missense_Mutation p.R522C 0.22 deleterious(0) probably_damaging(1) TCGA-EM-A4FV-01 7 27134894 27134894 T C HOXA1 Missense_Mutation p.N213S 0.14 deleterious(0) probably_damaging(0.969) TCGA-EM-A4FV-01 7 5336577 5336577 C T SLC29A4 Silent p.G210G 0.36 TCGA-EM-A4FV-01 X 147026458 147026458 C T FMR1 Missense_Mutation p.S514L 0.25 tolerated(0.12) benign(0.246) TCGA-EM-A4FV-01 X 153662756 153662756 A G ATP6AP1 Missense_Mutation p.N296S 0.23 tolerated(0.33) benign(0.153) TCGA-EM-A4FV-01 X 20148726 20148726 C G EIF1AX Splice_Site p.X113_splice 0.18 TCGA-EM-A4G1-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.40 tolerated(0.06) benign(0.006) TCGA-EM-A4G1-01 4 1984941 1984941 G A NELFA 3'UTR 0.54 TCGA-EM-A4G1-01 5 57790871 57790871 T A GAPT 3'UTR 0.14 TCGA-EM-A4G1-01 6 7231938 7231938 C T RREB1 Silent p.D1202D 0.09 TCGA-EM-A4G1-01 8 49643125 49643125 C T EFCAB1 Missense_Mutation p.R98Q 0.19 deleterious(0.01) possibly_damaging(0.627) TCGA-ET-A25G-01 10 18689869 18689869 A G CACNB2 Intron 0.50 TCGA-ET-A25G-01 10 97050691 97050691 G A PDLIM1 5'UTR 0.19 TCGA-ET-A25G-01 11 122805462 122805462 C T C11orf63 Missense_Mutation p.T438I 0.45 tolerated(0.14) benign(0.02) TCGA-ET-A25G-01 13 25670442 25670442 C T PABPC3 Missense_Mutation p.P36S 0.38 tolerated(0.08) possibly_damaging(0.798) TCGA-ET-A25G-01 1 33944900 33944900 C T ZSCAN20 Missense_Mutation p.A4V 0.38 tolerated(0.19) benign(0.01) TCGA-ET-A25G-01 1 86959123 86959123 C T CLCA1 Silent p.I507I 0.08 TCGA-ET-A25G-01 20 33589998 33589998 G T MYH7B 3'UTR 0.42 TCGA-ET-A25G-01 21 47538972 47538972 G A COL6A2 Missense_Mutation p.G403E 0.41 deleterious(0) probably_damaging(1) TCGA-ET-A25G-01 3 42845665 42845665 C T HIGD1A Missense_Mutation p.E7K 0.29 tolerated_low_confidence(0.75) benign(0.004) TCGA-ET-A25G-01 3 48310468 48310468 G A ZNF589 3'UTR 0.54 TCGA-ET-A25G-01 5 101572414 101572414 A G SLCO4C1 3'UTR 0.33 TCGA-ET-A25G-01 6 129920497 129920497 G A ARHGAP18 Missense_Mutation p.P526L 0.23 deleterious(0) probably_damaging(0.963) TCGA-ET-A25G-01 6 33967792 33967792 C T MIR1275 RNA 0.36 TCGA-ET-A25G-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-ET-A25G-01 7 44805072 44805072 C G ZMIZ2 Silent p.L712L 0.38 TCGA-ET-A25G-01 8 110396357 110396357 G A PKHD1L1 Splice_Site p.X159_splice 0.05 TCGA-ET-A25G-01 9 13217196 13217196 A G MPDZ Missense_Mutation p.I395T 0.48 tolerated(0.09) possibly_damaging(0.757) TCGA-ET-A25I-01 14 95906371 95906371 G C SYNE3 Missense_Mutation p.C651W 0.32 tolerated(0.22) benign(0.02) TCGA-ET-A25I-01 16 18823096 18823096 G A SMG1 Missense_Mutation p.S3632L 0.03 tolerated(0.11) possibly_damaging(0.76) TCGA-ET-A25I-01 17 33507620 33507620 C A UNC45B Missense_Mutation p.N768K 0.30 tolerated(0.26) benign(0.206) TCGA-ET-A25I-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.28 deleterious(0.01) benign(0.045) TCGA-ET-A25I-01 1 183072526 183072526 C G LAMC1 Missense_Mutation p.A161G 0.36 deleterious(0) possibly_damaging(0.743) TCGA-ET-A25I-01 1 41582675 41582675 C T SCMH1 Silent p.R130R 0.06 TCGA-ET-A25I-01 20 34218857 34218857 A G CPNE1 Missense_Mutation p.W326R 0.05 tolerated(0.45) probably_damaging(0.997) TCGA-ET-A25I-01 21 45542148 45542148 T A PWP2 Missense_Mutation p.V576E 0.16 tolerated(0.97) benign(0.066) TCGA-ET-A25I-01 22 17472966 17472966 C T GAB4 Missense_Mutation p.R92H 0.07 deleterious(0) benign(0.317) TCGA-ET-A25I-01 5 140209539 140209539 G A PCDHA6 Silent p.P621P 0.38 TCGA-ET-A25I-01 5 78111837 78111837 C A ARSB Intron 0.09 TCGA-ET-A25I-01 7 31683024 31683024 G T CCDC129 Missense_Mutation p.R706S 0.44 tolerated(0.62) benign(0.194) TCGA-ET-A25I-01 8 133900513 133900517 ATTCA - TG Frame_Shift_Del p.I821Kfs*4 0.37 TCGA-ET-A25I-01 8 77768323 77768323 C T ZFHX4 Missense_Mutation p.R3056W 0.05 probably_damaging(0.973) TCGA-ET-A25I-01 9 135275452 135275452 A G TTF1 Silent p.L521L 0.34 TCGA-ET-A25I-01 9 140135732 140135732 C G TUBB4B 5'UTR 0.33 TCGA-ET-A25I-01 X 153033718 153033718 G A PLXNB3 Silent p.S390S 0.42 TCGA-ET-A25I-01 X 17743871 17743871 C T NHS Missense_Mutation p.P528S 0.31 tolerated(0.75) benign(0.209) TCGA-ET-A25J-01 10 76970898 76970898 C T VDAC2 5'UTR 0.41 TCGA-ET-A25J-01 16 68009708 68009708 G A DPEP3 Missense_Mutation p.A501V 0.29 tolerated_low_confidence(0.88) benign(0.02) TCGA-ET-A25J-01 1 117568512 117568512 C T CD101 Missense_Mutation p.T937M 0.33 tolerated(0.15) benign(0.026) TCGA-ET-A25J-01 1 180062807 180062807 A G CEP350 Missense_Mutation p.K2523E 0.45 benign(0.018) TCGA-ET-A25J-01 2 135745373 135745373 G A MAP3K19 Nonsense_Mutation p.R357* 0.39 TCGA-ET-A25J-01 2 144704667 144704667 A T GTDC1 Missense_Mutation p.H443Q 0.34 tolerated(0.5) benign(0.157) TCGA-ET-A25J-01 3 72890283 72890283 G C SHQ1 Silent p.P133P 0.39 TCGA-ET-A25J-01 5 1403135 1403135 C T SLC6A3 Missense_Mutation p.A557T 0.11 tolerated(0.12) possibly_damaging(0.789) TCGA-ET-A25J-01 6 41162468 41162468 A G TREML2 Silent p.P160P 0.06 TCGA-ET-A25J-01 6 42796798 42796798 C T GLTSCR1L Nonsense_Mutation p.Q243* 0.40 TCGA-ET-A25J-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-ET-A25K-01 11 18745793 18745793 A G IGSF22 5'UTR 0.04 TCGA-ET-A25K-01 17 5253769 5253769 C T RABEP1 Nonsense_Mutation p.R270* 0.08 TCGA-ET-A25K-01 1 10397153 10397153 A G KIF1B Missense_Mutation p.M1005V 0.30 tolerated(0.13) benign(0.004) TCGA-ET-A25K-01 1 34190211 34190211 G A CSMD2 Silent p.T890T 0.07 TCGA-ET-A25K-01 20 62592689 62592689 T C ZNF512B Silent p.K800K 0.05 TCGA-ET-A25K-01 2 109382494 109382494 T G RANBP2 Silent p.S1833S 0.30 TCGA-ET-A25K-01 2 179455272 179455272 T G TTN Missense_Mutation p.K20394Q 0.35 TCGA-ET-A25K-01 4 69817482 69817482 G A UGT2A3 5'UTR 0.08 TCGA-ET-A25K-01 6 97051492 97051492 G C FHL5 Translation_Start_Site p.M1? 0.06 deleterious(0.03) possibly_damaging(0.725) TCGA-ET-A25K-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-ET-A25K-01 X 109919418 109919418 G A CHRDL1 3'UTR 0.27 TCGA-ET-A25O-01 10 103921613 103921613 A T NOLC1 Silent p.P624P 0.37 TCGA-ET-A25O-01 15 75660529 75660529 C T MAN2C1 Missense_Mutation p.A38T 0.38 tolerated(0.33) benign(0.085) TCGA-ET-A25O-01 17 44626432 44626432 A C LRRC37A2 Missense_Mutation p.K1309N 0.21 tolerated(0.09) probably_damaging(0.966) TCGA-ET-A25O-01 1 16957420 16957420 G C CROCCP2 RNA 0.25 TCGA-ET-A25O-01 2 114355098 114355098 G A WASH2P RNA 0.28 TCGA-ET-A25O-01 3 156411902 156411902 C A TIPARP Missense_Mutation p.S337R 0.40 tolerated(0.14) benign(0.002) TCGA-ET-A25O-01 4 119754779 119754779 G A SEC24D Missense_Mutation p.H25Y 0.37 tolerated_low_confidence(1) benign(0.153) TCGA-ET-A25O-01 5 68805542 68805542 G A OCLN Missense_Mutation p.G209S 0.44 tolerated(0.66) benign(0.002) TCGA-ET-A25O-01 6 51900420 51900420 G A PKHD1 Missense_Mutation p.S1066L 0.48 tolerated(0.07) possibly_damaging(0.808) TCGA-ET-A25O-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-ET-A25R-01 10 15646258 15646258 A G ITGA8 Silent p.F689F 0.47 TCGA-ET-A25R-01 11 3845632 3845632 C G PGAP2 Intron 0.11 TCGA-ET-A25R-01 15 90293428 90293428 C T MESP1 Missense_Mutation p.E252K 0.05 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-ET-A25R-01 15 90293429 90293429 C T MESP1 Silent p.L251L 0.06 TCGA-ET-A25R-01 1 145561416 145561416 C T ANKRD35 Silent p.G368G 0.46 TCGA-ET-A25R-01 1 43047065 43047065 A G CCDC30 Missense_Mutation p.H367R 0.06 tolerated(0.18) benign(0.23) TCGA-ET-A25R-01 22 40708536 40708536 G A TNRC6B Missense_Mutation p.G1488D 0.31 deleterious(0) probably_damaging(1) TCGA-ET-A25R-01 3 129389296 129389296 A T TMCC1 Missense_Mutation p.L463Q 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-ET-A25R-01 3 47882666 47882666 A - DHX30 Frame_Shift_Del p.R223Gfs*7 0.26 TCGA-ET-A25R-01 4 100341811 100341811 A T ADH7 Missense_Mutation p.V255E 0.41 deleterious(0) possibly_damaging(0.854) TCGA-ET-A25R-01 4 177095771 177095771 T C WDR17 Silent p.A1156A 0.19 TCGA-ET-A25R-01 5 89979771 89979771 C T GPR98 Silent p.V2011V 0.09 TCGA-ET-A25R-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-ET-A25R-01 7 88964296 88964296 G T ZNF804B Missense_Mutation p.S667I 0.19 deleterious(0) possibly_damaging(0.459) TCGA-ET-A2MX-01 11 4107718 4107718 C T STIM1 Nonsense_Mutation p.Q496* 0.18 TCGA-ET-A2MX-01 11 55702995 55702995 C G OR5I1 Missense_Mutation p.L294F 0.39 tolerated(0.08) probably_damaging(0.997) TCGA-ET-A2MX-01 12 49440047 49440047 C T KMT2D Missense_Mutation p.E1527K 0.38 probably_damaging(0.937) TCGA-ET-A2MX-01 19 42753122 42753122 G A ERF Missense_Mutation p.P381L 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-ET-A2MX-01 1 16935029 16935029 C T NBPF1 5'UTR 0.12 TCGA-ET-A2MX-01 2 105859266 105859266 C T GPR45 Silent p.S317S 0.05 TCGA-ET-A2MX-01 2 203806639 203806639 A G CARF Missense_Mutation p.N5S 0.07 tolerated_low_confidence(0.17) benign(0.004) TCGA-ET-A2MX-01 2 27530369 27530369 C T UCN 3'UTR 0.49 TCGA-ET-A2MX-01 3 53898851 53898851 T C IL17RB Missense_Mutation p.I342T 0.05 tolerated(0.2) benign(0.173) TCGA-ET-A2MX-01 4 183815718 183815718 C T DCTD Silent p.S106S 0.27 TCGA-ET-A2MX-01 5 122717833 122717833 C T CEP120 Missense_Mutation p.R692Q 0.46 tolerated(0.09) benign(0.029) TCGA-ET-A2MX-01 9 117849425 117849425 G A TNC Silent p.H195H 0.50 TCGA-ET-A2MX-01 9 7799725 7799725 G A TMEM261 Missense_Mutation p.R4W 0.44 tolerated(0.19) benign(0.276) TCGA-ET-A2MX-01 X 119005413 119005413 C T RNF113A Missense_Mutation p.R55Q 0.06 tolerated(0.06) benign(0.063) TCGA-ET-A2MX-01 X 153580679 153580679 G A FLNA Silent p.S2213S 0.13 TCGA-ET-A2MY-01 10 27520723 27520723 A G ACBD5 Missense_Mutation p.M110T 0.06 deleterious(0) probably_damaging(0.974) TCGA-ET-A2MY-01 10 63188763 63188763 G C TMEM26 Missense_Mutation p.Q176E 0.26 tolerated(0.2) benign(0.032) TCGA-ET-A2MY-01 11 65349703 65349703 G C EHBP1L1 Silent p.G520G 0.21 TCGA-ET-A2MY-01 11 66407597 66407597 G A RBM4 Intron 0.12 TCGA-ET-A2MY-01 11 70007786 70007786 G A ANO1 Silent p.L613L 0.16 TCGA-ET-A2MY-01 12 13769559 13769559 C T GRIN2B Missense_Mutation p.M386I 0.14 deleterious(0.01) possibly_damaging(0.489) TCGA-ET-A2MY-01 12 50264321 50264321 A G FAIM2 Missense_Mutation p.F306S 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-ET-A2MY-01 12 57910528 57910528 C T DDIT3 3'UTR 0.08 TCGA-ET-A2MY-01 12 57985101 57985101 C T PIP4K2C Missense_Mutation p.T10M 0.20 tolerated_low_confidence(0.2) unknown(0) TCGA-ET-A2MY-01 12 67699222 67699222 T A CAND1 Missense_Mutation p.C592S 0.05 deleterious(0.03) benign(0.376) TCGA-ET-A2MY-01 12 95660246 95660246 G C VEZT Missense_Mutation p.R183T 0.14 deleterious(0) possibly_damaging(0.845) TCGA-ET-A2MY-01 13 23909544 23909544 G A SACS Missense_Mutation p.S2824L 0.18 benign(0.184) TCGA-ET-A2MY-01 13 96555252 96555252 C G UGGT2 Missense_Mutation p.E786D 0.15 tolerated(0.5) benign(0.015) TCGA-ET-A2MY-01 14 75190043 75190043 C G FCF1 Missense_Mutation p.L121V 0.19 deleterious(0.01) possibly_damaging(0.491) TCGA-ET-A2MY-01 14 95058528 95058528 C T SERPINA5 Silent p.F391F 0.13 TCGA-ET-A2MY-01 15 44630079 44630079 C G CASC4 Nonsense_Mutation p.S232* 0.05 TCGA-ET-A2MY-01 15 51791873 51791873 A G DMXL2 Missense_Mutation p.L1183P 0.07 deleterious(0) probably_damaging(1) TCGA-ET-A2MY-01 15 55727220 55727220 G C DYX1C1 Missense_Mutation p.I310M 0.14 deleterious(0) possibly_damaging(0.857) TCGA-ET-A2MY-01 15 91523559 91523559 C T PRC1 Missense_Mutation p.E295K 0.16 deleterious(0.03) possibly_damaging(0.643) TCGA-ET-A2MY-01 16 57601840 57601840 C G GPR114 Missense_Mutation p.F298L 0.19 deleterious(0) probably_damaging(0.971) TCGA-ET-A2MY-01 16 88600417 88600417 T A ZFPM1 Missense_Mutation p.L684Q 0.20 deleterious(0.03) probably_damaging(0.942) TCGA-ET-A2MY-01 17 40271403 40271403 G A KAT2A Silent p.Y311Y 0.38 TCGA-ET-A2MY-01 17 74005905 74005905 G C EVPL Missense_Mutation p.I1127M 0.31 deleterious(0) probably_damaging(0.981) TCGA-ET-A2MY-01 17 79857212 79857212 C T ANAPC11 Silent p.I68I 0.22 TCGA-ET-A2MY-01 19 10221422 10221422 G A PPAN Missense_Mutation p.E361K 0.07 tolerated(0.3) benign(0.104) TCGA-ET-A2MY-01 19 52919958 52919958 C G ZNF528 Missense_Mutation p.S618C 0.14 deleterious(0) probably_damaging(0.921) TCGA-ET-A2MY-01 1 179077163 179077163 G C ABL2 Nonsense_Mutation p.S1080* 0.16 TCGA-ET-A2MY-01 1 179077269 179077269 G A ABL2 Nonsense_Mutation p.Q1045* 0.10 TCGA-ET-A2MY-01 1 201009764 201009764 G A CACNA1S Missense_Mutation p.P1738S 0.06 tolerated_low_confidence(0.14) benign(0.05) TCGA-ET-A2MY-01 1 24201958 24201958 C G CNR2 Missense_Mutation p.E50D 0.11 deleterious(0.01) probably_damaging(0.978) TCGA-ET-A2MY-01 1 59248693 59248693 G A JUN Missense_Mutation p.S17L 0.10 tolerated(0.1) benign(0.179) TCGA-ET-A2MY-01 20 58645884 58645884 G T C20orf197 Missense_Mutation p.S101I 0.21 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-ET-A2MY-01 21 30961208 30961208 T G GRIK1 Missense_Mutation p.Q507P 0.17 tolerated(0.21) benign(0.009) TCGA-ET-A2MY-01 21 45999968 45999968 C G KRTAP10-5 Missense_Mutation p.C163S 0.14 deleterious(0.03) unknown(0) TCGA-ET-A2MY-01 22 21340177 21340177 C G LZTR1 Missense_Mutation p.S104C 0.17 deleterious(0) probably_damaging(0.992) TCGA-ET-A2MY-01 2 152320159 152320159 G A RIF1 Silent p.E1375E 0.24 TCGA-ET-A2MY-01 2 170493789 170493789 C T PPIG Missense_Mutation p.S674L 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-ET-A2MY-01 2 220089873 220089873 G A ATG9A Missense_Mutation p.R146W 0.04 deleterious(0) probably_damaging(0.997) TCGA-ET-A2MY-01 2 233757743 233757743 T C NGEF Missense_Mutation p.E336G 0.06 deleterious(0) probably_damaging(0.99) TCGA-ET-A2MY-01 2 25754346 25754346 T C DTNB Missense_Mutation p.I333V 0.55 tolerated(0.12) benign(0.039) TCGA-ET-A2MY-01 2 27822493 27822493 G A ZNF512 Silent p.Q107Q 0.07 TCGA-ET-A2MY-01 2 54014295 54014295 C G ERLEC1 5'UTR 0.25 TCGA-ET-A2MY-01 2 54014378 54014378 C G ERLEC1 Missense_Mutation p.L11V 0.18 tolerated_low_confidence(0.16) unknown(0) TCGA-ET-A2MY-01 2 54014410 54014410 C T ERLEC1 Silent p.L21L 0.17 TCGA-ET-A2MY-01 3 108626832 108626832 T C GUCA1C 3'UTR 0.14 TCGA-ET-A2MY-01 3 155571317 155571317 T C SLC33A1 Missense_Mutation p.Y157C 0.05 tolerated(0.09) benign(0.02) TCGA-ET-A2MY-01 3 48716069 48716069 G C NCKIPSD Missense_Mutation p.F631L 0.16 tolerated(0.07) possibly_damaging(0.804) TCGA-ET-A2MY-01 3 52526232 52526232 G A NISCH Missense_Mutation p.D1417N 0.18 deleterious(0) probably_damaging(0.956) TCGA-ET-A2MY-01 3 52526412 52526412 G A NISCH Missense_Mutation p.E1477K 0.26 deleterious(0.01) possibly_damaging(0.899) TCGA-ET-A2MY-01 3 52526419 52526419 G A NISCH Missense_Mutation p.R1479K 0.26 deleterious(0) possibly_damaging(0.745) TCGA-ET-A2MY-01 4 108911038 108911038 C T HADH 5'UTR 0.25 TCGA-ET-A2MY-01 4 26432321 26432321 G A RBPJ Missense_Mutation p.E399K 0.08 tolerated(0.18) probably_damaging(0.966) TCGA-ET-A2MY-01 5 148748288 148748288 G C PCYOX1L 3'UTR 0.26 TCGA-ET-A2MY-01 6 109322623 109322623 G A SESN1 Silent p.G138G 0.08 TCGA-ET-A2MY-01 6 137519644 137519644 G T IFNGR1 Missense_Mutation p.P332T 0.39 tolerated(0.17) possibly_damaging(0.577) TCGA-ET-A2MY-01 6 99924037 99924037 C G USP45 Silent p.V305V 0.15 TCGA-ET-A2MY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-ET-A2MY-01 7 148767890 148767890 C T ZNF786 Silent p.V658V 0.13 TCGA-ET-A2MY-01 7 150439358 150439358 G T GIMAP5 Missense_Mutation p.G44V 0.15 deleterious(0) probably_damaging(0.996) TCGA-ET-A2MY-01 7 20782555 20782555 G A ABCB5 Missense_Mutation p.R1027H 0.12 deleterious(0.01) benign(0.427) TCGA-ET-A2MY-01 7 83764225 83764225 G C SEMA3A Missense_Mutation p.A52G 0.38 tolerated(0.37) benign(0.009) TCGA-ET-A2MY-01 8 12594452 12594452 C G LONRF1 Silent p.V437V 0.32 TCGA-ET-A2MY-01 8 145066705 145066705 C T GRINA Missense_Mutation p.L299F 0.35 deleterious(0.02) benign(0.418) TCGA-ET-A2MY-01 8 146107607 146107607 G T ZNF250 Missense_Mutation p.L326M 0.44 deleterious(0) probably_damaging(1) TCGA-ET-A2MY-01 8 28196729 28196729 G A PNOC Missense_Mutation p.R100Q 0.11 tolerated(0.06) probably_damaging(0.996) TCGA-ET-A2MY-01 8 28635438 28635438 G C INTS9 Missense_Mutation p.P435A 0.17 deleterious(0.01) possibly_damaging(0.556) TCGA-ET-A2MY-01 9 131397416 131397416 G A WDR34 Silent p.F312F 0.21 TCGA-ET-A2MY-01 9 37783998 37783998 G C EXOSC3 Missense_Mutation p.F129L 0.15 deleterious(0) probably_damaging(0.928) TCGA-ET-A2MY-01 9 97933399 97933399 G C FANCC Silent p.L161L 0.20 TCGA-ET-A2MY-01 X 117819739 117819739 G A DOCK11 Missense_Mutation p.G2064D 0.45 tolerated_low_confidence(0.21) benign(0.276) TCGA-ET-A2MZ-01 10 81113639 81113639 C G PPIF 3'UTR 0.31 TCGA-ET-A2MZ-01 19 24288767 24288767 C T ZNF254 Missense_Mutation p.A19V 0.35 tolerated(0.07) possibly_damaging(0.768) TCGA-ET-A2MZ-01 1 70716352 70716352 A - SRSF11 Frame_Shift_Del p.E441Rfs*5 0.13 TCGA-ET-A2MZ-01 2 43010952 43010952 T A HAAO Missense_Mutation p.H72L 0.40 tolerated(0.08) benign(0.015) TCGA-ET-A2MZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-ET-A2MZ-01 8 37693173 37693173 G A GPR124 Silent p.L645L 0.28 TCGA-ET-A2N0-01 11 133790942 133790942 T C IGSF9B Missense_Mutation p.D893G 0.33 deleterious(0) probably_damaging(0.999) TCGA-ET-A2N0-01 11 4945145 4945145 C T OR51G1 Missense_Mutation p.C142Y 0.33 tolerated(0.2) benign(0.018) TCGA-ET-A2N0-01 12 112241699 112241699 C A ALDH2 Silent p.P481P 0.17 TCGA-ET-A2N0-01 12 6120922 6120922 G A VWF Silent p.T1901T 0.05 TCGA-ET-A2N0-01 17 8792478 8792479 - T PIK3R5 Nonsense_Mutation p.Y291* 0.26 TCGA-ET-A2N0-01 18 9126840 9126840 A G NDUFV2 Silent p.T197T 0.04 TCGA-ET-A2N0-01 19 23406086 23406086 G A ZNF724P Nonsense_Mutation p.Q321* 0.33 TCGA-ET-A2N0-01 1 159799720 159799720 G T SLAMF8 Silent p.L35L 0.31 TCGA-ET-A2N0-01 1 65119491 65119491 C G CACHD1 Missense_Mutation p.P480A 0.29 tolerated(0.5) benign(0) TCGA-ET-A2N0-01 20 5904106 5904106 G T CHGB Missense_Mutation p.R439M 0.38 deleterious(0.01) probably_damaging(0.975) TCGA-ET-A2N0-01 4 104640780 104640780 C A TACR3 Missense_Mutation p.G18V 0.40 deleterious_low_confidence(0) benign(0.127) TCGA-ET-A2N0-01 6 160868784 160868786 TGC - SLC22A3 In_Frame_Del p.M515_L516delinsI 0.32 TCGA-ET-A2N0-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-ET-A2N1-01 12 69756619 69756619 G A YEATS4 Missense_Mutation p.G35R 0.12 deleterious(0) probably_damaging(0.994) TCGA-ET-A2N1-01 13 41331142 41331142 T A MRPS31 Missense_Mutation p.N203Y 0.46 deleterious(0) possibly_damaging(0.76) TCGA-ET-A2N1-01 15 24923276 24923276 G A NPAP1 Silent p.R754R 0.04 TCGA-ET-A2N1-01 16 28920058 28920058 G T RABEP2 Missense_Mutation p.L373M 0.36 tolerated(0.12) possibly_damaging(0.682) TCGA-ET-A2N1-01 16 4411173 4411173 A C CORO7 Silent p.T588T 0.33 TCGA-ET-A2N1-01 17 47583935 47583935 G A NGFR Silent p.V161V 0.52 TCGA-ET-A2N1-01 17 80400118 80400118 C A HEXDC Silent p.R470R 0.10 TCGA-ET-A2N1-01 19 49116552 49116552 T C FAM83E Silent p.L26L 0.50 TCGA-ET-A2N1-01 5 101726729 101726729 C T SLCO6A1 Missense_Mutation p.R612H 0.36 tolerated(0.37) benign(0.122) TCGA-ET-A2N1-01 6 170033096 170033096 C A WDR27 Missense_Mutation p.A724S 0.18 tolerated(0.12) possibly_damaging(0.64) TCGA-ET-A2N3-01 11 117375679 117375679 G A DSCAML1 Silent p.D774D 0.38 TCGA-ET-A2N3-01 16 89767450 89767450 C T SPATA2L Missense_Mutation p.R64H 0.17 tolerated(0.19) probably_damaging(0.973) TCGA-ET-A2N3-01 22 38211250 38211251 - A GCAT Frame_Shift_Ins p.C259Mfs*16 0.58 TCGA-ET-A2N3-01 2 135700181 135700181 G T CCNT2 Splice_Site p.X144_splice 0.14 TCGA-ET-A2N3-01 2 179360222 179360222 G C PLEKHA3 Splice_Site p.X151_splice 0.50 TCGA-ET-A2N3-01 3 119305355 119305355 G A ADPRH Silent p.A174A 0.10 TCGA-ET-A2N3-01 4 38777942 38777942 A C TLR10 5'UTR 0.48 TCGA-ET-A2N3-01 5 178418554 178418555 - C GRM6 Frame_Shift_Ins p.V243Gfs*40 0.31 TCGA-ET-A2N3-01 7 158527136 158527136 T A ESYT2 Missense_Mutation p.E871D 0.31 tolerated(1) benign(0.001) TCGA-ET-A2N3-01 8 88886182 88886182 C T DCAF4L2 Silent p.P6P 0.49 TCGA-ET-A2N3-01 9 115923922 115923922 G C SLC31A2 Missense_Mutation p.E69D 0.33 tolerated(0.17) benign(0.081) TCGA-ET-A2N3-01 9 137982159 137982159 G A OLFM1 Missense_Mutation p.R72H 0.40 deleterious(0) possibly_damaging(0.812) TCGA-ET-A2N4-01 12 109614053 109614053 G T ACACB Silent p.P474P 0.42 TCGA-ET-A2N4-01 13 49281729 49281729 G A CYSLTR2 Missense_Mutation p.C259Y 0.44 deleterious(0) probably_damaging(1) TCGA-ET-A2N4-01 16 57718006 57718006 C T GPR97 Silent p.F348F 0.28 TCGA-ET-A2N4-01 16 74530417 74530417 C T GLG1 Silent p.E300E 0.05 TCGA-ET-A2N4-01 17 617889 617889 G A VPS53 Missense_Mutation p.P21S 0.07 deleterious(0.03) possibly_damaging(0.749) TCGA-ET-A2N4-01 1 149785150 149785150 G A HIST2H3D Silent p.S29S 0.39 TCGA-ET-A2N4-01 1 151491695 151491695 C T CGN Missense_Mutation p.H234Y 0.33 tolerated(1) benign(0.221) TCGA-ET-A2N4-01 1 155734928 155734928 C G GON4L Missense_Mutation p.V1446L 0.09 deleterious_low_confidence(0.01) benign(0.002) TCGA-ET-A2N4-01 1 160094203 160094203 T A ATP1A2 Missense_Mutation p.S205T 0.36 tolerated(0.17) benign(0.011) TCGA-ET-A2N4-01 1 160784239 160784239 G A LY9 Missense_Mutation p.G254R 0.34 tolerated(0.13) possibly_damaging(0.685) TCGA-ET-A2N4-01 1 45984618 45984618 T C PRDX1 Missense_Mutation p.D33G 0.06 deleterious(0) benign(0.234) TCGA-ET-A2N4-01 22 31927093 31927093 A G SFI1 Missense_Mutation p.R106G 0.06 deleterious(0) possibly_damaging(0.758) TCGA-ET-A2N4-01 3 111693318 111693318 T A PHLDB2 Missense_Mutation p.Y1224N 0.29 deleterious(0) probably_damaging(1) TCGA-ET-A2N4-01 3 134076538 134076538 C T AMOTL2 3'UTR 0.14 TCGA-ET-A2N4-01 3 15616558 15616558 A G HACL1 Missense_Mutation p.F279L 0.14 tolerated(1) benign(0) TCGA-ET-A2N4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-ET-A2N4-01 7 72413486 72413486 C T POM121 Missense_Mutation p.P720L 0.04 deleterious(0.04) probably_damaging(0.98) TCGA-ET-A2N4-01 7 94058709 94058709 G A COL1A2 Silent p.R1307R 0.33 TCGA-ET-A2N4-01 8 104427255 104427255 G C DCAF13 Missense_Mutation p.V13L 0.44 benign(0) TCGA-ET-A2N4-01 8 55541490 55541490 C A RP1 Missense_Mutation p.S1683Y 0.08 tolerated(0.33) benign(0.023) TCGA-ET-A2N4-01 X 49114015 49114015 G A FOXP3 Missense_Mutation p.T108M 0.09 deleterious_low_confidence(0) benign(0.026) TCGA-ET-A2N5-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.39 tolerated(0.07) benign(0.069) TCGA-ET-A2N5-01 12 70948968 70948968 G T PTPRB Nonsense_Mutation p.Y1705* 0.39 TCGA-ET-A2N5-01 16 68598529 68598529 A T ZFP90 Missense_Mutation p.E613D 0.42 tolerated(0.16) benign(0.003) TCGA-ET-A2N5-01 19 11917928 11917928 A G ZNF491 Missense_Mutation p.H387R 0.42 deleterious(0.04) benign(0.112) TCGA-ET-A2N5-01 20 31024411 31024411 G A ASXL1 Missense_Mutation p.G1299D 0.33 tolerated(0.09) benign(0.393) TCGA-ET-A2N5-01 20 34087927 34087927 C T CEP250 Missense_Mutation p.T1276I 0.41 benign(0.008) TCGA-ET-A2N5-01 3 181430265 181430265 C - SOX2 Frame_Shift_Del p.R40Afs*6 0.36 TCGA-ET-A2N5-01 3 184071569 184071569 C T CLCN2 Missense_Mutation p.R579H 0.20 tolerated(0.15) probably_damaging(0.999) TCGA-ET-A2N5-01 3 97467477 97467477 A G EPHA6 Missense_Mutation p.I1109V 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-ET-A2N5-01 X 152986357 152986357 G A BCAP31 Missense_Mutation p.L122F 0.09 tolerated(0.22) probably_damaging(0.972) TCGA-ET-A39I-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.43 tolerated(0.07) benign(0.069) TCGA-ET-A39I-01 14 47121002 47121002 C T RPL10L 5'UTR 0.20 TCGA-ET-A39I-01 14 96794755 96794755 G A ATG2B Missense_Mutation p.P698S 0.18 tolerated(0.13) probably_damaging(0.979) TCGA-ET-A39I-01 15 43724389 43724389 C T TP53BP1 Intron 0.09 TCGA-ET-A39I-01 17 65941716 65941716 G T BPTF Nonsense_Mutation p.E2298* 0.14 TCGA-ET-A39I-01 18 43469775 43469775 T C EPG5 Missense_Mutation p.E1647G 0.40 deleterious(0) probably_damaging(0.969) TCGA-ET-A39I-01 19 49812977 49812977 G A SLC6A16 Silent p.V269V 0.35 TCGA-ET-A39I-01 19 6230657 6230657 T C MLLT1 Missense_Mutation p.N115S 0.38 tolerated(0.09) benign(0.298) TCGA-ET-A39I-01 2 170367329 170367329 A T KLHL41 Silent p.I347I 0.14 TCGA-ET-A39I-01 2 85536172 85536172 A T TCF7L1 Nonsense_Mutation p.K452* 0.41 TCGA-ET-A39I-01 3 124951687 124951687 A C ZNF148 Missense_Mutation p.L628R 0.14 deleterious(0.02) probably_damaging(0.998) TCGA-ET-A39I-01 7 100028059 100028059 C T MEPCE Missense_Mutation p.R140W 0.31 deleterious(0.01) probably_damaging(0.947) TCGA-ET-A39I-01 7 149129526 149129526 G A ZNF777 Missense_Mutation p.P613S 0.38 tolerated(0.19) benign(0.002) TCGA-ET-A39I-01 X 10417367 10417367 C A MID1 3'UTR 0.55 TCGA-ET-A39J-01 10 105209325 105209325 C G CALHM2 Missense_Mutation p.G125A 0.34 deleterious(0.01) probably_damaging(0.983) TCGA-ET-A39J-01 10 37414870 37414870 G A ANKRD30A 5'UTR 0.32 TCGA-ET-A39J-01 12 120934286 120934286 C T DYNLL1 Missense_Mutation p.S21L 0.31 tolerated(0.07) benign(0.003) TCGA-ET-A39J-01 14 65266617 65266617 A - SPTB Frame_Shift_Del p.I304Mfs*7 0.25 TCGA-ET-A39J-01 16 70029993 70029993 G A PDXDC2P RNA 0.44 TCGA-ET-A39J-01 19 15465698 15465698 C T AKAP8 3'UTR 0.30 TCGA-ET-A39J-01 1 158583510 158583510 C T SPTA1 Splice_Site p.X2330_splice 0.39 TCGA-ET-A39J-01 2 102792036 102792036 C T IL1R1 Missense_Mutation p.P412S 0.37 deleterious(0) probably_damaging(1) TCGA-ET-A39J-01 4 2241959 2241959 G C HAUS3 Missense_Mutation p.Q239E 0.29 deleterious(0.03) benign(0.209) TCGA-ET-A39J-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-ET-A39K-01 17 27208390 27208390 C T FLOT2 Silent p.V306V 0.09 TCGA-ET-A39K-01 1 63991290 63991290 C A EFCAB7 Nonsense_Mutation p.S16* 0.10 TCGA-ET-A39K-01 1 93297634 93297634 C G RPL5 5'UTR 0.21 TCGA-ET-A39K-01 20 47626931 47626931 C G ARFGEF2 Missense_Mutation p.C1249W 0.38 deleterious(0) benign(0.131) TCGA-ET-A39K-01 4 109578625 109578625 A G OSTC Missense_Mutation p.M85V 0.10 deleterious(0.03) benign(0.232) TCGA-ET-A39K-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-ET-A39K-01 7 17370506 17370506 T A AHR Missense_Mutation p.F234Y 0.41 deleterious(0.01) possibly_damaging(0.855) TCGA-ET-A39K-01 X 34148211 34148211 C T FAM47A Missense_Mutation p.V729I 0.05 tolerated(1) benign(0.075) TCGA-ET-A39L-01 11 108032299 108032299 A G NPAT Missense_Mutation p.C1172R 0.10 tolerated(0.56) benign(0.013) TCGA-ET-A39L-01 1 203816376 203816376 C T ZC3H11A Silent p.A369A 0.10 TCGA-ET-A39L-01 21 11098733 11098733 G A BAGE2 RNA 0.08 TCGA-ET-A39L-01 9 2039809 2039809 G A SMARCA2 Silent p.Q233Q 0.24 TCGA-ET-A39M-01 11 61511242 61511242 C T DAGLA Missense_Mutation p.R804W 0.05 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-ET-A39M-01 16 56716416 56716416 C T MT1X 5'UTR 0.04 TCGA-ET-A39M-01 17 4453510 4453510 T G MYBBP1A Missense_Mutation p.T388P 0.04 deleterious(0.01) benign(0.104) TCGA-ET-A39M-01 1 20009578 20009578 G A TMCO4 Silent p.P620P 0.23 TCGA-ET-A39M-01 20 55101160 55101160 G A FAM209A 3'UTR 0.13 TCGA-ET-A39M-01 22 17583105 17583105 C T IL17RA Silent p.N225N 0.04 TCGA-ET-A39M-01 22 24123183 24123183 G A MMP11 Missense_Mutation p.G252S 0.05 deleterious(0) probably_damaging(1) TCGA-ET-A39M-01 22 50617591 50617591 G A PANX2 Missense_Mutation p.G640E 0.07 tolerated_low_confidence(0.37) benign(0.001) TCGA-ET-A39M-01 6 127837687 127837687 C T SOGA3 Missense_Mutation p.A25T 0.10 deleterious_low_confidence(0) benign(0.011) TCGA-ET-A39M-01 7 107752270 107752270 C T LAMB4 Nonsense_Mutation p.W105* 0.05 TCGA-ET-A39M-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.22 deleterious(0) probably_damaging(0.967) TCGA-ET-A39M-01 9 132375757 132375757 C T C9orf50 Missense_Mutation p.E334K 0.07 tolerated(0.05) possibly_damaging(0.627) TCGA-ET-A39M-01 X 152159280 152159280 C T PNMA5 Missense_Mutation p.R288H 0.46 tolerated(0.08) possibly_damaging(0.867) TCGA-ET-A39N-01 10 105945732 105945732 C A WDR96 Missense_Mutation p.L670F 0.06 deleterious(0.01) possibly_damaging(0.861) TCGA-ET-A39N-01 11 5530553 5530553 C T UBQLN3 Missense_Mutation p.C79Y 0.67 tolerated(0.13) probably_damaging(1) TCGA-ET-A39N-01 11 55587399 55587399 C G OR5D18 Missense_Mutation p.C98W 0.20 deleterious(0) probably_damaging(1) TCGA-ET-A39N-01 12 51442144 51442144 C T LETMD1 Missense_Mutation p.A2V 0.59 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-ET-A39N-01 15 75969141 75969141 C T CSPG4 Missense_Mutation p.V1907M 0.22 deleterious(0.05) benign(0.042) TCGA-ET-A39N-01 17 35766471 35766471 C A ACACA 5'UTR 0.06 TCGA-ET-A39N-01 22 24034469 24034469 G A RGL4 Intron 0.16 TCGA-ET-A39N-01 22 41252613 41252613 T G ST13 5'UTR 0.56 TCGA-ET-A39N-01 4 119944588 119944588 C T SYNPO2 Nonsense_Mutation p.R37* 0.38 TCGA-ET-A39N-01 4 36069767 36069767 C T ARAP2 Missense_Mutation p.R1626Q 0.05 tolerated(0.18) benign(0.131) TCGA-ET-A39N-01 5 56180602 56180602 G T MAP3K1 Nonsense_Mutation p.G1311* 0.05 TCGA-ET-A39N-01 9 80919787 80919787 A C PSAT1 Missense_Mutation p.K110Q 0.07 deleterious(0.01) benign(0.266) TCGA-ET-A39N-01 X 125299431 125299431 G A DCAF12L2 Silent p.P159P 0.04 TCGA-ET-A39O-01 14 69522320 69522320 G A DCAF5 Silent p.S361S 0.38 TCGA-ET-A39O-01 17 4443214 4443214 G A MYBBP1A Silent p.T1161T 0.09 TCGA-ET-A39O-01 1 1636450 1636450 G C CDK11A Missense_Mutation p.L451V 0.33 deleterious(0) unknown(0) TCGA-ET-A39O-01 1 179887369 179887369 T C TOR1AIP1 Silent p.L583L 0.07 TCGA-ET-A39O-01 3 49724384 49724384 C G MST1 Missense_Mutation p.G242R 0.32 tolerated(0.31) benign(0.008) TCGA-ET-A39O-01 4 174169178 174169178 A G GALNT7 Silent p.G58G 0.06 TCGA-ET-A39O-01 5 57751948 57751948 G A PLK2 Missense_Mutation p.S430F 0.06 deleterious(0.02) benign(0.054) TCGA-ET-A39O-01 6 116758279 116758279 C T DSE Missense_Mutation p.A883V 0.39 tolerated_low_confidence(1) benign(0) TCGA-ET-A39O-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-ET-A39O-01 7 149494406 149494406 G T SSPO RNA 0.06 TCGA-ET-A39O-01 9 100961815 100961815 G A TBC1D2 Missense_Mutation p.R868W 0.04 deleterious(0.02) benign(0.099) TCGA-ET-A39O-01 X 125299510 125299510 A T DCAF12L2 Missense_Mutation p.I133N 0.06 deleterious(0) possibly_damaging(0.886) TCGA-ET-A39P-01 10 15688984 15688984 T C ITGA8 Silent p.E356E 0.11 TCGA-ET-A39P-01 12 55615054 55615054 T A OR10A7 Silent p.L82L 0.42 TCGA-ET-A39P-01 12 69140181 69140181 G T SLC35E3 Silent p.V8V 0.54 TCGA-ET-A39P-01 12 69140182 69140182 C T SLC35E3 Missense_Mutation p.R9W 0.54 tolerated(0.22) benign(0.001) TCGA-ET-A39P-01 14 102471238 102471238 C A DYNC1H1 Missense_Mutation p.A1730E 0.42 benign(0.001) TCGA-ET-A39P-01 14 106967198 106967198 C T IGHV1-46 Missense_Mutation p.G68R 0.27 deleterious(0.04) benign(0.414) TCGA-ET-A39P-01 16 31072858 31072858 G A ZNF668 Missense_Mutation p.P487L 0.33 tolerated(0.19) benign(0.059) TCGA-ET-A39P-01 1 10459135 10459135 C T PGD 5'Flank 0.43 TCGA-ET-A39P-01 1 154574423 154574423 C T ADAR Missense_Mutation p.R232K 0.26 tolerated(1) unknown(0) TCGA-ET-A39P-01 1 184671950 184671950 T C EDEM3 Missense_Mutation p.D795G 0.31 deleterious(0.02) possibly_damaging(0.601) TCGA-ET-A39P-01 1 53927304 53927304 C A DMRTB1 Missense_Mutation p.Q246K 0.49 tolerated(0.09) benign(0.093) TCGA-ET-A39P-01 1 92711147 92711147 T G C1orf146 Silent p.A153A 0.37 TCGA-ET-A39P-01 2 27666263 27666263 A C KRTCAP3 Splice_Site p.X161_splice 0.40 TCGA-ET-A39P-01 3 10413502 10413502 G C ATP2B2 Silent p.T550T 0.26 TCGA-ET-A39P-01 3 9876847 9876847 G C TTLL3 Missense_Mutation p.E808Q 0.22 deleterious_low_confidence(0) benign(0.047) TCGA-ET-A39P-01 5 172571476 172571476 G C BNIP1 5'UTR 0.40 TCGA-ET-A39P-01 5 35874644 35874644 G T IL7R Missense_Mutation p.R267M 0.37 deleterious(0) probably_damaging(0.982) TCGA-ET-A39P-01 6 26598884 26598884 G A ABT1 3'UTR 0.21 TCGA-ET-A39P-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-ET-A39P-01 7 152480280 152480280 A T ACTR3B Missense_Mutation p.K18M 0.15 deleterious(0) probably_damaging(1) TCGA-ET-A39P-01 8 113358377 113358377 A G CSMD3 Missense_Mutation p.Y2131H 0.39 deleterious(0) probably_damaging(0.99) TCGA-ET-A39P-01 X 54955736 54955736 G T TRO Missense_Mutation p.S860I 0.41 deleterious(0) benign(0.169) TCGA-ET-A39P-01 X 55650232 55650232 T A FOXR2 Missense_Mutation p.L30I 0.35 tolerated(0.56) benign(0.009) TCGA-ET-A39R-01 19 10116500 10116500 G A COL5A3 Missense_Mutation p.P137S 0.35 unknown(0) TCGA-ET-A39R-01 2 227663266 227663266 C A IRS1 Silent p.S63S 0.11 TCGA-ET-A39R-01 7 149129472 149129472 C G ZNF777 Missense_Mutation p.G631R 0.23 deleterious(0.04) possibly_damaging(0.654) TCGA-ET-A39R-01 8 133053841 133053841 C T OC90 Missense_Mutation p.R92Q 0.32 deleterious(0) probably_damaging(1) TCGA-ET-A39R-01 X 152734614 152734614 T C HAUS7 Missense_Mutation p.M82V 0.35 deleterious(0.01) benign(0.269) TCGA-ET-A39S-01 17 3518731 3518731 T C SHPK Silent p.P308P 0.29 TCGA-ET-A39S-01 1 42922269 42922269 C T PPCS Silent p.P11P 0.13 TCGA-ET-A39S-01 2 198571775 198571775 G T MARS2 Missense_Mutation p.G549V 0.24 tolerated(0.23) benign(0.004) TCGA-ET-A39S-01 3 52356519 52356519 A G DNAH1 Missense_Mutation p.S21G 0.19 benign(0) TCGA-ET-A39S-01 7 117067517 117067517 C T ASZ1 5'UTR 0.06 TCGA-ET-A39S-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.33 deleterious(0) probably_damaging(0.967) TCGA-ET-A39T-01 10 44873178 44873178 C T CXCL12 3'UTR 0.12 TCGA-ET-A39T-01 11 428731 428731 G A ANO9 Silent p.T337T 0.10 TCGA-ET-A39T-01 15 55497812 55497812 G A RAB27A Missense_Mutation p.R187W 0.09 deleterious(0) possibly_damaging(0.654) TCGA-ET-A39T-01 16 28990543 28990543 C T SPNS1 Missense_Mutation p.A171V 0.37 deleterious(0) probably_damaging(0.997) TCGA-ET-A39T-01 19 2099048 2099048 G A IZUMO4 Intron 0.06 TCGA-ET-A39T-01 19 53472683 53472683 C T ZNF702P RNA 0.47 TCGA-ET-A39T-01 1 157804272 157804272 G T CD5L Missense_Mutation p.L215I 0.07 tolerated(0.1) possibly_damaging(0.501) TCGA-ET-A39T-01 2 29474117 29474117 G A ALK Silent p.T686T 0.11 TCGA-ET-A39T-01 3 186268971 186268971 G C TBCCD1 Missense_Mutation p.P548A 0.42 tolerated(0.1) benign(0.037) TCGA-ET-A39T-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-ET-A39T-01 8 55538950 55538950 G T RP1 Silent p.P836P 0.38 TCGA-ET-A39T-01 X 122830671 122830671 G C THOC2 Missense_Mutation p.L123V 0.41 deleterious(0) possibly_damaging(0.78) TCGA-ET-A39T-01 X 1540713 1540713 C T ASMTL Silent p.A361A 0.08 TCGA-ET-A3BN-01 11 6048549 6048549 C T OR56A1 Missense_Mutation p.R129H 0.40 deleterious(0.02) benign(0.002) TCGA-ET-A3BN-01 11 85436918 85436918 A G SYTL2 Silent p.L194L 0.09 TCGA-ET-A3BN-01 12 123472877 123472877 G A PITPNM2 Silent p.S967S 0.06 TCGA-ET-A3BN-01 13 102375158 102375158 T C FGF14 3'UTR 0.50 TCGA-ET-A3BN-01 14 24839190 24839190 G A NFATC4 Missense_Mutation p.D259N 0.08 deleterious(0) probably_damaging(0.98) TCGA-ET-A3BN-01 17 41246314 41246314 C T BRCA1 Missense_Mutation p.V412I 0.07 tolerated(0.12) benign(0.009) TCGA-ET-A3BN-01 19 50864374 50864374 T G NAPSA Silent p.S164S 0.05 TCGA-ET-A3BN-01 2 31147110 31147110 T A GALNT14 Missense_Mutation p.I424F 0.25 tolerated(0.43) benign(0.001) TCGA-ET-A3BN-01 3 10865141 10865141 G A SLC6A11 Intron 0.40 TCGA-ET-A3BN-01 6 41773536 41773536 C T USP49 Missense_Mutation p.D396N 0.14 tolerated(0.87) probably_damaging(0.994) TCGA-ET-A3BN-01 8 20077879 20077880 - CGAATTTTA ATP6V1B2 In_Frame_Ins p.E502_Y504dup 0.11 TCGA-ET-A3BN-01 X 15509287 15509287 C T PIR Missense_Mutation p.E32K 0.07 tolerated(0.31) possibly_damaging(0.745) TCGA-ET-A3BO-01 11 118966071 118966071 G T H2AFX Missense_Mutation p.R12S 0.20 tolerated_low_confidence(0.08) unknown(0) TCGA-ET-A3BO-01 19 14865797 14865797 A G EMR2 Missense_Mutation p.F520S 0.05 deleterious(0) probably_damaging(0.991) TCGA-ET-A3BO-01 19 14992048 14992048 G A OR7A17 Silent p.L40L 0.09 TCGA-ET-A3BO-01 19 53913153 53913153 G A ZNF765 3'UTR 0.07 TCGA-ET-A3BO-01 1 75102110 75102110 G A C1orf173 Missense_Mutation p.P153S 0.05 deleterious(0) probably_damaging(1) TCGA-ET-A3BO-01 2 242065688 242065688 C T PASK Missense_Mutation p.G881E 0.04 tolerated(0.44) possibly_damaging(0.904) TCGA-ET-A3BO-01 2 33335734 33335734 C T LTBP1 Nonsense_Mutation p.Q317* 0.08 TCGA-ET-A3BO-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BO-01 8 133981764 133981765 - AT TG Frame_Shift_Ins p.S1977Yfs*37 0.22 TCGA-ET-A3BP-01 16 10524630 10524630 G A ATF7IP2 Silent p.Q51Q 0.46 TCGA-ET-A3BP-01 16 50339756 50339756 G A ADCY7 Missense_Mutation p.R583H 0.30 deleterious(0.01) benign(0.025) TCGA-ET-A3BP-01 6 62688015 62688015 G A KHDRBS2 Missense_Mutation p.R147C 0.42 deleterious(0) probably_damaging(0.996) TCGA-ET-A3BP-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BP-01 X 3242413 3242413 T G MXRA5 Missense_Mutation p.D438A 0.24 deleterious(0.01) benign(0.323) TCGA-ET-A3BQ-01 10 121586793 121586794 CA - INPP5F Frame_Shift_Del p.Q968Efs*17 0.12 TCGA-ET-A3BQ-01 10 29769508 29769508 C A SVIL Missense_Mutation p.D1779Y 0.38 deleterious(0) probably_damaging(1) TCGA-ET-A3BQ-01 14 21542856 21542856 G A ARHGEF40 Missense_Mutation p.E323K 0.29 deleterious(0.04) benign(0.092) TCGA-ET-A3BQ-01 17 80923589 80923589 G C B3GNTL1 Missense_Mutation p.P180A 0.46 deleterious(0) probably_damaging(0.99) TCGA-ET-A3BQ-01 1 108292102 108292102 G A VAV3 Silent p.T458T 0.16 TCGA-ET-A3BQ-01 22 21982797 21982797 G A YDJC Silent p.C294C 0.07 TCGA-ET-A3BQ-01 2 175436655 175436655 G A WIPF1 Missense_Mutation p.P293L 0.12 deleterious(0) probably_damaging(0.987) TCGA-ET-A3BQ-01 2 238939226 238939226 C T UBE2F Missense_Mutation p.T128I 0.27 tolerated(0.38) possibly_damaging(0.585) TCGA-ET-A3BQ-01 3 180381735 180381735 C T CCDC39 Missense_Mutation p.E44K 0.12 tolerated(0.31) benign(0.056) TCGA-ET-A3BQ-01 4 6711139 6711139 G A MRFAP1L1 Missense_Mutation p.A73V 0.03 tolerated(0.06) possibly_damaging(0.866) TCGA-ET-A3BQ-01 5 175530270 175530270 C A FAM153B Missense_Mutation p.N158K 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.599) TCGA-ET-A3BQ-01 5 177161894 177161894 G T FAM153A Missense_Mutation p.N158K 0.32 deleterious_low_confidence(0.03) benign(0.399) TCGA-ET-A3BQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BQ-01 7 150878358 150878358 C T ASB10 Missense_Mutation p.V258I 0.25 tolerated(0.22) benign(0.005) TCGA-ET-A3BQ-01 X 153585851 153585851 G A FLNA Silent p.Y1632Y 0.06 TCGA-ET-A3BS-01 11 108384325 108384325 C T EXPH5 Missense_Mutation p.D637N 0.09 deleterious(0.03) possibly_damaging(0.901) TCGA-ET-A3BS-01 12 98991696 98991696 T G SLC25A3 Silent p.G115G 0.33 TCGA-ET-A3BS-01 1 192321267 192321267 C T RGS21 Missense_Mutation p.T60M 0.16 deleterious(0.01) probably_damaging(1) TCGA-ET-A3BS-01 1 46501483 46501483 C T MAST2 Silent p.A1714A 0.04 TCGA-ET-A3BS-01 2 101598737 101598737 A G NPAS2 Silent p.L509L 0.06 TCGA-ET-A3BS-01 5 22078769 22078769 C G CDH12 Missense_Mutation p.C6S 0.35 tolerated(0.09) possibly_damaging(0.879) TCGA-ET-A3BS-01 5 38511959 38511959 G A LIFR Silent p.Y223Y 0.29 TCGA-ET-A3BS-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BS-01 8 19811648 19811648 C T LPL Missense_Mutation p.P187S 0.33 deleterious(0) probably_damaging(0.969) TCGA-ET-A3BT-01 10 51853047 51853047 C T FAM21A Silent p.F341F 0.16 TCGA-ET-A3BT-01 10 99350382 99350382 C G C10orf62 3'UTR 0.48 TCGA-ET-A3BT-01 11 32460511 32460511 T C WT1 5'Flank 0.10 TCGA-ET-A3BT-01 11 48347139 48347139 A G OR4C3 Missense_Mutation p.N216S 0.17 deleterious(0) benign(0.234) TCGA-ET-A3BT-01 11 51411842 51411842 G A OR4A5 Missense_Mutation p.A185V 0.54 tolerated_low_confidence(0.21) benign(0.12) TCGA-ET-A3BT-01 11 8008855 8008855 A G EIF3F 5'UTR 0.41 TCGA-ET-A3BT-01 12 123001975 123001975 C T RSRC2 Missense_Mutation p.R134H 0.09 tolerated_low_confidence(0.23) unknown(0) TCGA-ET-A3BT-01 12 49087741 49087741 G T CCNT1 Missense_Mutation p.A419E 0.44 deleterious(0.04) probably_damaging(0.992) TCGA-ET-A3BT-01 12 6781601 6781601 G A ZNF384 Missense_Mutation p.R337C 0.43 deleterious(0) benign(0.35) TCGA-ET-A3BT-01 17 39635994 39635994 C T KRT35 Missense_Mutation p.E171K 0.12 deleterious(0.02) benign(0.119) TCGA-ET-A3BT-01 18 21660663 21660663 T A TTC39C Nonsense_Mutation p.L192* 0.34 TCGA-ET-A3BT-01 18 28602425 28602425 C T DSC3 Silent p.P273P 0.39 TCGA-ET-A3BT-01 18 9588150 9588150 G A PPP4R1 Silent p.C174C 0.09 TCGA-ET-A3BT-01 19 2278644 2278644 T C C19orf35 Missense_Mutation p.D184G 0.38 deleterious(0.01) probably_damaging(0.927) TCGA-ET-A3BT-01 19 35719205 35719205 G A FAM187B Missense_Mutation p.P127S 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-ET-A3BT-01 1 220232162 220232162 C T BPNT1 3'UTR 0.42 TCGA-ET-A3BT-01 1 248525828 248525828 G T OR2T4 Missense_Mutation p.V316L 0.42 tolerated(0.31) benign(0.016) TCGA-ET-A3BT-01 1 45120353 45120353 G A TMEM53 Missense_Mutation p.R238C 0.40 deleterious(0.02) benign(0.008) TCGA-ET-A3BT-01 3 141462360 141462360 T G RNF7 Missense_Mutation p.L62R 0.28 deleterious(0) probably_damaging(0.995) TCGA-ET-A3BT-01 3 142031581 142031581 C T XRN1 Silent p.S1559S 0.04 TCGA-ET-A3BT-01 6 80715612 80715612 A G TTK Missense_Mutation p.N18D 0.11 tolerated(0.28) benign(0.005) TCGA-ET-A3BT-01 7 104742494 104742495 - A KMT2E Frame_Shift_Ins p.I684Nfs*9 0.15 TCGA-ET-A3BT-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.47 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BT-01 7 150656867 150656867 G T KCNH2 Intron 0.47 TCGA-ET-A3BT-01 9 8454579 8454579 C A PTPRD Intron 0.28 TCGA-ET-A3BT-01 X 106016280 106016281 - T RNF128 Frame_Shift_Ins p.V211Rfs*42 0.34 TCGA-ET-A3BT-01 X 134947924 134947924 A T CT45A5 Missense_Mutation p.I134N 0.38 deleterious(0) possibly_damaging(0.79) TCGA-ET-A3BT-01 X 134947928 134947928 C G CT45A5 Missense_Mutation p.E133Q 0.35 deleterious(0) probably_damaging(0.975) TCGA-ET-A3BU-01 10 103899202 103899202 C T PPRC1 Missense_Mutation p.H313Y 0.27 deleterious(0) possibly_damaging(0.597) TCGA-ET-A3BU-01 10 88939978 88939978 T C FAM35A Silent p.L704L 0.27 TCGA-ET-A3BU-01 17 27910005 27910005 G A GIT1 Silent p.S79S 0.27 TCGA-ET-A3BU-01 5 61832571 61832571 A G IPO11 Missense_Mutation p.N751S 0.28 tolerated(0.44) benign(0.084) TCGA-ET-A3BU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BU-01 9 132084622 132084622 G T C9orf106 RNA 0.27 TCGA-ET-A3BV-01 10 79581669 79581669 G T DLG5 Missense_Mutation p.P858Q 0.09 tolerated_low_confidence(0.59) benign(0.001) TCGA-ET-A3BV-01 11 56431736 56431736 C A OR5AR1 Missense_Mutation p.T192N 0.12 tolerated(0.05) possibly_damaging(0.887) TCGA-ET-A3BV-01 11 66472833 66472833 C T SPTBN2 Silent p.E638E 0.12 TCGA-ET-A3BV-01 13 38166263 38166263 A G POSTN Missense_Mutation p.M86T 0.08 deleterious(0.01) benign(0.334) TCGA-ET-A3BV-01 14 88945377 88945377 C G PTPN21 Missense_Mutation p.D800H 0.11 deleterious(0) probably_damaging(0.995) TCGA-ET-A3BV-01 14 92471796 92471796 C T TRIP11 Missense_Mutation p.E842K 0.06 deleterious(0.03) benign(0.344) TCGA-ET-A3BV-01 16 30744989 30744989 G A SRCAP Missense_Mutation p.G2122S 0.09 probably_damaging(0.998) TCGA-ET-A3BV-01 16 4924499 4924499 T G UBN1 Silent p.P696P 0.09 TCGA-ET-A3BV-01 17 38345558 38345558 C G RAPGEFL1 Missense_Mutation p.L143V 0.22 deleterious(0) probably_damaging(0.956) TCGA-ET-A3BV-01 17 4689488 4689488 G A VMO1 Missense_Mutation p.P54S 0.19 deleterious(0.03) probably_damaging(1) TCGA-ET-A3BV-01 17 49052246 49052246 C G SPAG9 Missense_Mutation p.E1196Q 0.07 deleterious(0.01) benign(0.082) TCGA-ET-A3BV-01 17 72938090 72938090 C T OTOP3 Silent p.D195D 0.09 TCGA-ET-A3BV-01 17 74869018 74869018 G A MGAT5B Missense_Mutation p.D63N 0.16 deleterious_low_confidence(0) possibly_damaging(0.875) TCGA-ET-A3BV-01 18 77474796 77474796 A G CTDP1 Missense_Mutation p.T446A 0.33 tolerated(1) benign(0) TCGA-ET-A3BV-01 19 371211 371211 C T THEG Missense_Mutation p.M249I 0.15 deleterious(0.01) benign(0.318) TCGA-ET-A3BV-01 19 37129608 37129608 C T ZNF461 Missense_Mutation p.E547K 0.10 tolerated(0.07) benign(0.008) TCGA-ET-A3BV-01 19 37676134 37676134 C G ZNF585B Missense_Mutation p.A769P 0.07 deleterious(0) benign(0.158) TCGA-ET-A3BV-01 1 201183351 201183351 G A IGFN1 Silent p.Q2925Q 0.23 TCGA-ET-A3BV-01 1 22412941 22412941 A T CDC42 Missense_Mutation p.D63V 0.17 deleterious(0) probably_damaging(0.987) TCGA-ET-A3BV-01 1 74665386 74665397 GCAATAACAGCG - FPGT-TNNI3K In_Frame_Del p.I55_A58del 0.26 TCGA-ET-A3BV-01 2 188332580 188332580 A G TFPI Silent p.N236N 0.21 TCGA-ET-A3BV-01 3 194991296 194991296 G A XXYLT1 Silent p.G164G 0.30 TCGA-ET-A3BV-01 3 47098632 47098632 T - SETD2 Frame_Shift_Del p.E2215Nfs*33 0.10 TCGA-ET-A3BV-01 3 49064023 49064023 G C IMPDH2 Missense_Mutation p.S280C 0.07 deleterious(0.04) possibly_damaging(0.816) TCGA-ET-A3BV-01 3 58849302 58849302 G T C3orf67 Silent p.G400G 0.14 TCGA-ET-A3BV-01 5 142393652 142393652 A C ARHGAP26 Missense_Mutation p.N372T 0.21 tolerated(0.48) benign(0.403) TCGA-ET-A3BV-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BV-01 7 77200434 77200435 AT - PTPN12 Frame_Shift_Del p.Y48Sfs*12 0.19 TCGA-ET-A3BV-01 8 121457748 121457748 G A MTBP Missense_Mutation p.G13E 0.10 tolerated_low_confidence(0.11) benign(0.213) TCGA-ET-A3BV-01 8 8176174 8176174 G A SGK223 Silent p.P1237P 0.09 TCGA-ET-A3BW-01 11 71806169 71806169 G C LRTOMT Intron 0.50 TCGA-ET-A3BW-01 17 49083476 49083476 T C SPAG9 Missense_Mutation p.K465R 0.04 tolerated(1) benign(0.05) TCGA-ET-A3BW-01 17 58734159 58734159 C - PPM1D Frame_Shift_Del p.C407Vfs*2 0.30 TCGA-ET-A3BW-01 19 16199868 16199868 C T TPM4 Silent p.L193L 0.21 TCGA-ET-A3BW-01 19 4529334 4529334 C T PLIN5 Intron 0.38 TCGA-ET-A3BW-01 1 153745028 153745028 G A INTS3 Intron 0.43 TCGA-ET-A3BW-01 1 228481123 228481123 G A OBSCN Missense_Mutation p.R4075Q 0.07 benign(0.001) TCGA-ET-A3BW-01 2 179610555 179610555 A G TTN Intron 0.37 TCGA-ET-A3BW-01 2 39241096 39241096 C A SOS1 Missense_Mutation p.D659Y 0.07 deleterious(0) probably_damaging(0.999) TCGA-ET-A3BW-01 6 36884339 36884339 G T C6orf89 Missense_Mutation p.V279L 0.06 tolerated(0.68) benign(0.002) TCGA-ET-A3BW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.50 deleterious(0) probably_damaging(0.967) TCGA-ET-A3BW-01 8 38287336 38287336 C T FGFR1 Silent p.A107A 0.25 TCGA-ET-A3BW-01 9 127999360 127999360 A C HSPA5 Silent p.R492R 0.13 TCGA-ET-A3BX-01 11 34133597 34133597 A G NAT10 Splice_Site p.X67_splice 0.11 TCGA-ET-A3BX-01 11 494654 494654 G A RNH1 3'UTR 0.28 TCGA-ET-A3BX-01 13 36743129 36743129 G A SOHLH2 3'UTR 0.05 TCGA-ET-A3BX-01 14 39763206 39763206 G A CTAGE5 Missense_Mutation p.M171I 0.44 tolerated(0.58) benign(0.003) TCGA-ET-A3BX-01 15 20489432 20489432 G A CHEK2P2 RNA 0.05 TCGA-ET-A3BX-01 19 41021270 41021270 G A SPTBN4 Missense_Mutation p.V940M 0.18 deleterious(0) probably_damaging(0.993) TCGA-ET-A3BX-01 19 7747624 7747624 C G TRAPPC5 Missense_Mutation p.A162G 0.50 deleterious(0.01) possibly_damaging(0.828) TCGA-ET-A3BX-01 1 12382678 12382678 C G VPS13D Missense_Mutation p.A2597G 0.36 benign(0.035) TCGA-ET-A3BX-01 1 152329145 152329145 C T FLG2 Missense_Mutation p.G373S 0.39 unknown(0) TCGA-ET-A3BX-01 2 74392437 74392437 G A MOB1A Missense_Mutation p.P106L 0.29 deleterious(0.01) possibly_damaging(0.88) TCGA-ET-A3BX-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.42 deleterious(0) probably_damaging(0.967) TCGA-ET-A3DO-01 13 108861705 108861705 T C LIG4 Missense_Mutation p.I638V 0.32 tolerated(0.82) benign(0.001) TCGA-ET-A3DO-01 15 57730273 57730273 A G CGNL1 Missense_Mutation p.T26A 0.07 tolerated(0.18) benign(0.003) TCGA-ET-A3DO-01 19 56363698 56363698 C T NLRP4 Silent p.L84L 0.06 TCGA-ET-A3DO-01 1 1269087 1269087 C T TAS1R3 Missense_Mutation p.A601V 0.18 deleterious(0.05) probably_damaging(0.981) TCGA-ET-A3DO-01 1 23696056 23696056 T A C1orf213 Missense_Mutation p.L89Q 0.25 tolerated_low_confidence(0.31) possibly_damaging(0.883) TCGA-ET-A3DO-01 1 41486324 41486324 G C SLFNL1 Silent p.P3P 0.11 TCGA-ET-A3DO-01 1 61743213 61743213 C G NFIA Missense_Mutation p.P239R 0.31 deleterious(0.03) probably_damaging(0.949) TCGA-ET-A3DO-01 21 46067139 46067139 C T KRTAP10-11 Missense_Mutation p.S255F 0.09 deleterious(0.01) possibly_damaging(0.788) TCGA-ET-A3DO-01 4 54232231 54232231 C G SCFD2 5'UTR 0.50 TCGA-ET-A3DO-01 5 90074772 90074772 G A GPR98 Missense_Mutation p.D4314N 0.06 probably_damaging(0.945) TCGA-ET-A3DO-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-ET-A3DO-01 8 145009393 145009393 C A PLEC Nonsense_Mutation p.G368* 0.14 TCGA-ET-A3DO-01 9 34649475 34649475 C T GALT Missense_Mutation p.P325S 0.04 deleterious(0) probably_damaging(1) TCGA-ET-A3DO-01 X 110653418 110653418 T C DCX Missense_Mutation p.Y151C 0.05 deleterious(0) probably_damaging(0.998) TCGA-ET-A3DO-01 X 118585975 118585975 C T SLC25A43 Nonsense_Mutation p.Q232* 0.10 TCGA-ET-A3DO-01 X 123637463 123637463 G A TENM1 Missense_Mutation p.S1131F 0.06 deleterious(0) possibly_damaging(0.78) TCGA-ET-A3DO-01 X 152482113 152482113 C T MAGEA1 Missense_Mutation p.A300T 0.32 deleterious(0.01) unknown(0) TCGA-ET-A3DP-01 10 1126013 1126013 G A WDR37 Missense_Mutation p.A100T 0.10 tolerated(0.21) probably_damaging(0.956) TCGA-ET-A3DP-01 14 24676436 24676436 T C TSSK4 Silent p.S185S 0.06 TCGA-ET-A3DP-01 15 43785284 43785284 C A TP53BP1 5'UTR 0.15 TCGA-ET-A3DP-01 17 34191291 34191291 G A C17orf66 Missense_Mutation p.R176C 0.12 deleterious(0) possibly_damaging(0.634) TCGA-ET-A3DP-01 17 37431233 37431233 G A FBXL20 Missense_Mutation p.P273S 0.29 tolerated(0.24) benign(0.01) TCGA-ET-A3DP-01 17 49067105 49067105 C A SPAG9 Nonsense_Mutation p.E916* 0.09 TCGA-ET-A3DP-01 17 7722542 7722542 G A DNAH2 Missense_Mutation p.A3611T 0.05 probably_damaging(0.995) TCGA-ET-A3DP-01 1 166890222 166890222 G A ILDR2 Nonsense_Mutation p.Q536* 0.17 TCGA-ET-A3DP-01 1 907717 907717 C T PLEKHN1 Silent p.Y305Y 0.06 TCGA-ET-A3DP-01 20 45891129 45891129 G A ZMYND8 Silent p.S508S 0.06 TCGA-ET-A3DP-01 3 45636405 45636405 A T LIMD1 Missense_Mutation p.S12C 0.28 deleterious(0) probably_damaging(0.999) TCGA-ET-A3DP-01 3 49866894 49866894 C T TRAIP Silent p.Q428Q 0.36 TCGA-ET-A3DP-01 4 122846346 122846346 G A TRPC3 Missense_Mutation p.L335F 0.10 deleterious(0) probably_damaging(0.96) TCGA-ET-A3DP-01 5 90025580 90025580 A G GPR98 Missense_Mutation p.I3516M 0.17 possibly_damaging(0.703) TCGA-ET-A3DP-01 6 33139342 33139342 C T COL11A2 Missense_Mutation p.G968S 0.35 probably_damaging(0.931) TCGA-ET-A3DP-01 6 35919045 35919045 G A SLC26A8 Silent p.H789H 0.08 TCGA-ET-A3DP-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.44 deleterious(0) probably_damaging(0.967) TCGA-ET-A3DP-01 7 82584499 82584499 T C PCLO Missense_Mutation p.K1924E 0.50 unknown(0) TCGA-ET-A3DP-01 X 100650727 100650727 C A RPL36A Silent p.I140I 0.30 TCGA-ET-A3DQ-01 10 115481474 115481474 G T CASP7 Silent p.L137L 0.15 TCGA-ET-A3DQ-01 17 4643964 4643964 C A ZMYND15 Silent p.R41R 0.07 TCGA-ET-A3DQ-01 18 30350455 30350455 C A KLHL14 Missense_Mutation p.D34Y 0.21 deleterious(0) probably_damaging(0.98) TCGA-ET-A3DQ-01 19 38993288 38993288 G A RYR1 Missense_Mutation p.V2586M 0.06 benign(0.144) TCGA-ET-A3DQ-01 22 20130550 20130550 C T ZDHHC8 Missense_Mutation p.A466V 0.07 tolerated(0.05) probably_damaging(0.997) TCGA-ET-A3DQ-01 6 139694455 139694455 G T CITED2 Silent p.P209P 0.11 TCGA-ET-A3DR-01 10 54011361 54011361 C G PRKG1 Missense_Mutation p.L370V 0.23 tolerated(0.68) benign(0.057) TCGA-ET-A3DR-01 11 65147382 65147382 G A SLC25A45 Missense_Mutation p.R37W 0.31 deleterious(0.03) possibly_damaging(0.863) TCGA-ET-A3DR-01 12 6472921 6472921 G A SCNN1A Intron 0.08 TCGA-ET-A3DR-01 13 21374986 21374986 T C XPO4 Missense_Mutation p.E654G 0.07 deleterious(0) probably_damaging(0.974) TCGA-ET-A3DR-01 13 31848757 31848757 C A B3GALTL Missense_Mutation p.P258T 0.03 deleterious(0.01) benign(0.411) TCGA-ET-A3DR-01 17 43101857 43101857 C T DCAKD Missense_Mutation p.A214T 0.23 tolerated(0.18) benign(0.012) TCGA-ET-A3DR-01 17 47247083 47247083 C T B4GALNT2 Missense_Mutation p.A565V 0.07 tolerated(0.23) benign(0.01) TCGA-ET-A3DR-01 17 73489653 73489653 A G KIAA0195 Missense_Mutation p.Y723C 0.39 tolerated(0.39) probably_damaging(0.995) TCGA-ET-A3DR-01 1 154101784 154101784 G A NUP210L Silent p.C349C 0.08 TCGA-ET-A3DR-01 2 26536378 26536378 T G GPR113 Missense_Mutation p.H447P 0.28 deleterious(0.04) probably_damaging(0.966) TCGA-ET-A3DR-01 3 151129080 151129080 C T MED12L Silent p.G1940G 0.32 TCGA-ET-A3DR-01 5 127674746 127674746 G A FBN2 Silent p.D1117D 0.33 TCGA-ET-A3DR-01 5 132400700 132400700 C T HSPA4 Missense_Mutation p.R46C 0.03 deleterious(0) probably_damaging(0.996) TCGA-ET-A3DR-01 6 148840738 148840738 C G SASH1 Silent p.L306L 0.48 TCGA-ET-A3DR-01 7 104715089 104715089 G T KMT2E Splice_Site p.X186_splice 0.34 TCGA-ET-A3DR-01 9 72082746 72082746 C T APBA1 Missense_Mutation p.R492K 0.03 deleterious(0.05) benign(0.014) TCGA-ET-A3DR-01 9 84532572 84532572 C T SPATA31D5P RNA 0.05 TCGA-ET-A3DR-01 X 86919891 86919891 A G KLHL4 Missense_Mutation p.N685D 0.47 tolerated(0.12) benign(0.007) TCGA-ET-A3DS-01 10 93748982 93748982 T C BTAF1 Silent p.S833S 0.34 TCGA-ET-A3DS-01 11 32953853 32953853 T G QSER1 Missense_Mutation p.V221G 0.20 tolerated(0.42) benign(0) TCGA-ET-A3DS-01 12 123276650 123276650 G T CCDC62 Missense_Mutation p.D252Y 0.16 deleterious(0) probably_damaging(1) TCGA-ET-A3DS-01 14 21679622 21679623 AG - HNRNPC Frame_Shift_Del p.S260Cfs*2 0.25 TCGA-ET-A3DS-01 14 81609809 81609809 C A TSHR Silent p.L469L 0.37 TCGA-ET-A3DS-01 17 7829388 7829388 G A KCNAB3 Silent p.S146S 0.08 TCGA-ET-A3DS-01 3 121415620 121415620 G A GOLGB1 Silent p.D1250D 0.22 TCGA-ET-A3DS-01 5 37176053 37176053 G A C5orf42 Missense_Mutation p.T1979I 0.04 tolerated(1) benign(0.004) TCGA-ET-A3DS-01 9 130224635 130224635 C T LRSAM1 Missense_Mutation p.H171Y 0.20 tolerated(0.21) probably_damaging(0.952) TCGA-ET-A3DS-01 X 135427194 135427194 C T GPR112 Silent p.A443A 0.25 TCGA-ET-A3DS-01 X 19560130 19560130 G A SH3KBP1 Missense_Mutation p.A602V 0.36 tolerated(0.25) possibly_damaging(0.542) TCGA-ET-A3DT-01 11 1907970 1907970 C T LSP1 Silent p.G370G 0.08 TCGA-ET-A3DT-01 17 15973810 15973810 T A NCOR1 Silent p.S1394S 0.25 TCGA-ET-A3DT-01 3 51746681 51746681 G T GRM2 Missense_Mutation p.D215Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-ET-A3DT-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-ET-A3DU-01 15 43910240 43910240 G A STRC Nonsense_Mutation p.R127* 0.36 TCGA-ET-A3DU-01 15 66633685 66633685 G A TIPIN Missense_Mutation p.A162V 0.11 tolerated(0.35) benign(0.002) TCGA-ET-A3DU-01 16 2011570 2011570 C T NDUFB10 Silent p.N114N 0.13 TCGA-ET-A3DU-01 19 40433640 40433640 G A FCGBP Missense_Mutation p.S210L 0.11 possibly_damaging(0.565) TCGA-ET-A3DU-01 1 145368466 145368466 G A NBPF10 Missense_Mutation p.E3482K 0.05 benign(0.001) TCGA-ET-A3DU-01 1 159557633 159557633 G A APCS 5'UTR 0.24 TCGA-ET-A3DU-01 1 65117914 65117914 G A CACHD1 Silent p.V436V 0.13 TCGA-ET-A3DU-01 20 62340073 62340073 C G ZGPAT Missense_Mutation p.I47M 0.11 deleterious(0) probably_damaging(1) TCGA-ET-A3DU-01 2 233710457 233710457 G A GIGYF2 Silent p.V1128V 0.05 TCGA-ET-A3DU-01 2 54146345 54146345 C A PSME4 Missense_Mutation p.C820F 0.05 deleterious(0) possibly_damaging(0.887) TCGA-ET-A3DU-01 3 170078021 170078021 G T SKIL 5'UTR 0.08 TCGA-ET-A3DU-01 4 79207662 79207662 C T FRAS1 Silent p.D501D 0.07 TCGA-ET-A3DU-01 6 106992466 106992466 C T AIM1 Missense_Mutation p.P1279L 0.05 deleterious(0) possibly_damaging(0.828) TCGA-ET-A3DU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-ET-A3DU-01 7 151878394 151878394 G C KMT2C Missense_Mutation p.S2184C 0.07 possibly_damaging(0.67) TCGA-ET-A3DU-01 7 151878929 151878929 G A KMT2C Missense_Mutation p.H2006Y 0.07 benign(0.148) TCGA-ET-A3DU-01 7 151879081 151879081 G A KMT2C Missense_Mutation p.S1955F 0.06 possibly_damaging(0.774) TCGA-ET-A3DU-01 7 151879574 151879574 G A KMT2C Nonsense_Mutation p.Q1791* 0.08 TCGA-ET-A3DU-01 9 73152080 73152080 C T TRPM3 Missense_Mutation p.E1305K 0.20 deleterious(0.01) possibly_damaging(0.672) TCGA-ET-A3DU-01 X 103042822 103042822 C T PLP1 Silent p.T183T 0.24 TCGA-ET-A3DV-01 10 88911225 88911225 A T FAM35A Missense_Mutation p.K38N 0.53 deleterious(0.04) benign(0.167) TCGA-ET-A3DV-01 11 67173417 67173417 C T TBC1D10C Nonsense_Mutation p.R171* 0.25 TCGA-ET-A3DV-01 13 50586828 50586828 A G TRIM13 Missense_Mutation p.Q254R 0.04 tolerated(0.18) possibly_damaging(0.58) TCGA-ET-A3DV-01 15 69349008 69349008 G T NOX5 Missense_Mutation p.G757V 0.56 deleterious(0.03) benign(0.398) TCGA-ET-A3DV-01 16 55363139 55363139 C T IRX6 Silent p.L417L 0.06 TCGA-ET-A3DV-01 19 547312 547312 C T GZMM Missense_Mutation p.R30W 0.47 deleterious(0.01) possibly_damaging(0.821) TCGA-ET-A3DV-01 1 3624240 3624240 C T TP73 Missense_Mutation p.T105I 0.41 deleterious(0) probably_damaging(0.997) TCGA-ET-A3DV-01 1 7831418 7831418 C T VAMP3 5'UTR 0.41 TCGA-ET-A3DV-01 20 32341114 32341114 G A ZNF341 Missense_Mutation p.R209H 0.55 tolerated(0.15) possibly_damaging(0.763) TCGA-ET-A3DV-01 8 134072405 134072408 TTTC - SLA Frame_Shift_Del p.E40Wfs*5 0.39 TCGA-ET-A3DV-01 X 151818902 151818902 C T GABRQ Missense_Mutation p.R254C 0.02 deleterious(0) probably_damaging(1) TCGA-ET-A3DW-01 10 128193581 128193581 G A C10orf90 Missense_Mutation p.S63L 0.40 tolerated(0.08) benign(0.002) TCGA-ET-A3DW-01 11 45958119 45958119 A G PHF21A Missense_Mutation p.M536T 0.36 deleterious(0.01) benign(0.277) TCGA-ET-A3DW-01 11 55761604 55761604 C T OR5F1 Silent p.L166L 0.11 TCGA-ET-A3DW-01 12 49177306 49177306 G A ADCY6 5'UTR 0.50 TCGA-ET-A3DW-01 12 49412614 49412614 C T PRKAG1 5'Flank 0.48 TCGA-ET-A3DW-01 14 36987112 36987112 T C NKX2-1 Missense_Mutation p.K193E 0.53 deleterious(0) possibly_damaging(0.64) TCGA-ET-A3DW-01 14 69864981 69864981 C T ERH 5'UTR 0.35 TCGA-ET-A3DW-01 16 30388975 30388975 C T MYLPF Silent p.F119F 0.33 TCGA-ET-A3DW-01 16 72821228 72821228 T C ZFHX3 Silent p.S3649S 0.42 TCGA-ET-A3DW-01 18 2697862 2697862 A G SMCHD1 Missense_Mutation p.I389V 0.08 tolerated(0.5) benign(0.064) TCGA-ET-A3DW-01 18 61018297 61018297 T A KDSR Missense_Mutation p.N145Y 0.46 deleterious(0) probably_damaging(1) TCGA-ET-A3DW-01 19 19790171 19790171 G T ZNF101 Missense_Mutation p.A125S 0.42 tolerated(0.23) benign(0.003) TCGA-ET-A3DW-01 19 39898789 39898789 C G ZFP36 Missense_Mutation p.T150R 0.36 deleterious(0) probably_damaging(1) TCGA-ET-A3DW-01 1 205892514 205892514 G A SLC26A9 Silent p.S536S 0.08 TCGA-ET-A3DW-01 1 91404819 91404819 T C ZNF644 Missense_Mutation p.M698V 0.50 tolerated_low_confidence(1) benign(0) TCGA-ET-A3DW-01 22 26747060 26747060 G A SEZ6L Missense_Mutation p.R817H 0.38 deleterious(0) probably_damaging(0.922) TCGA-ET-A3DW-01 2 148684674 148684674 T C ACVR2A Missense_Mutation p.I458T 0.09 deleterious(0.03) possibly_damaging(0.883) TCGA-ET-A3DW-01 3 137991824 137991824 G A ARMC8 Missense_Mutation p.A485T 0.35 deleterious(0.03) benign(0.02) TCGA-ET-A3DW-01 3 150127909 150127909 A G TSC22D2 Missense_Mutation p.M258V 0.39 tolerated(0.49) benign(0.019) TCGA-ET-A3DW-01 4 174238797 174238797 G A GALNT7 Missense_Mutation p.E541K 0.06 tolerated(0.67) benign(0.028) TCGA-ET-A3DW-01 4 25669575 25669576 - G SLC34A2 Frame_Shift_Ins p.A200Gfs*10 0.10 TCGA-ET-A3DW-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-ET-A3DW-01 7 33976989 33976989 A T BMPER Missense_Mutation p.E103V 0.48 deleterious(0.01) possibly_damaging(0.635) TCGA-ET-A40P-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.33 tolerated(0.07) benign(0.069) TCGA-ET-A40P-01 14 102910016 102910016 G A TECPR2 Missense_Mutation p.V929I 0.11 tolerated(0.09) benign(0.003) TCGA-ET-A40P-01 14 54955695 54955695 G T GMFB 5'UTR 0.12 TCGA-ET-A40P-01 16 8906904 8906904 C T PMM2 Nonsense_Mutation p.R194* 0.04 TCGA-ET-A40P-01 19 17758148 17758148 G A UNC13A Missense_Mutation p.T657M 0.29 tolerated(0.07) benign(0.386) TCGA-ET-A40P-01 1 100614603 100614603 C A LRRC39 3'UTR 0.07 TCGA-ET-A40P-01 22 20796598 20796598 C T KLHL22 Missense_Mutation p.R556H 0.69 tolerated(0.12) benign(0.066) TCGA-ET-A40P-01 4 169214990 169214990 C T DDX60 Missense_Mutation p.R277H 0.08 tolerated(0.51) benign(0.002) TCGA-ET-A40P-01 9 96019417 96019417 C T WNK2 Missense_Mutation p.P793L 0.34 unknown(0) TCGA-ET-A40P-01 X 125299250 125299250 A T DCAF12L2 Missense_Mutation p.W220R 0.25 deleterious(0) probably_damaging(1) TCGA-ET-A40P-01 X 129171350 129171351 TC - BCORL1 Frame_Shift_Del p.Y1440Lfs*7 0.38 TCGA-ET-A40P-01 X 154197713 154197713 C T F8 Missense_Mutation p.R301H 0.07 deleterious(0) probably_damaging(1) TCGA-ET-A40Q-01 10 103339245 103339245 G A POLL Missense_Mutation p.L565F 0.28 deleterious(0) possibly_damaging(0.872) TCGA-ET-A40Q-01 11 64880883 64880883 T G TM7SF2 Missense_Mutation p.S166A 0.23 deleterious(0.01) possibly_damaging(0.714) TCGA-ET-A40Q-01 12 53457578 53457578 G A TENC1 Missense_Mutation p.C1391Y 0.37 deleterious(0) probably_damaging(1) TCGA-ET-A40Q-01 15 41571574 41571574 G T CHP1 Missense_Mutation p.R192L 0.16 deleterious(0) possibly_damaging(0.598) TCGA-ET-A40Q-01 16 216306 216306 G A HBM Silent p.P44P 0.13 TCGA-ET-A40Q-01 17 66347794 66347794 G A ARSG Missense_Mutation p.C178Y 0.37 deleterious(0) probably_damaging(0.997) TCGA-ET-A40Q-01 19 22847457 22847457 G C ZNF492 Missense_Mutation p.R329T 0.11 tolerated(0.22) benign(0.209) TCGA-ET-A40Q-01 19 40480666 40480666 G A PSMC4 Missense_Mutation p.V202I 0.28 deleterious(0.04) probably_damaging(0.978) TCGA-ET-A40Q-01 1 89427829 89427829 C T CCBL2 Splice_Site p.X152_splice 0.29 TCGA-ET-A40Q-01 1 92941546 92941546 G A GFI1 3'UTR 0.16 TCGA-ET-A40Q-01 22 31010337 31010337 G A TCN2 Silent p.G143G 0.14 TCGA-ET-A40Q-01 2 190340192 190340192 T C WDR75 3'UTR 0.12 TCGA-ET-A40Q-01 2 241570428 241570428 C G GPR35 3'UTR 0.27 TCGA-ET-A40Q-01 5 86675610 86675610 T C RASA1 Missense_Mutation p.L849S 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-ET-A40Q-01 6 35716418 35716418 C T ARMC12 Missense_Mutation p.P292L 0.28 tolerated(0.08) benign(0.415) TCGA-ET-A40Q-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-ET-A40S-01 10 74034179 74034185 GGTGAGC - DDIT4 Splice_Site p.X69_splice 0.27 TCGA-ET-A40S-01 11 34184192 34184201 GGGCCTTGGT - ABTB2 Frame_Shift_Del p.T714Yfs*20 0.34 TCGA-ET-A40S-01 12 19408022 19408022 A G PLEKHA5 Missense_Mutation p.I119V 0.28 tolerated(0.89) benign(0.002) TCGA-ET-A40S-01 12 8990110 8990111 GA - A2ML1 Frame_Shift_Del p.E269Gfs*8 0.26 TCGA-ET-A40S-01 16 4934540 4934540 G A PPL Silent p.A1372A 0.12 TCGA-ET-A40S-01 17 10265497 10265497 C T MYH13 Missense_Mutation p.R148H 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-ET-A40S-01 17 18647965 18647965 T C FBXW10 Silent p.Y136Y 0.06 TCGA-ET-A40S-01 19 15871692 15871692 G A LLNLR-249E10.1 RNA 0.31 TCGA-ET-A40S-01 19 334487 334487 C T MIER2 Silent p.Q52Q 0.18 TCGA-ET-A40S-01 19 55145098 55145098 G A LILRB1 Missense_Mutation p.G424E 0.59 tolerated(0.23) benign(0.012) TCGA-ET-A40S-01 1 205350961 205350961 G A LEMD1 Missense_Mutation p.T124I 0.33 tolerated(0.53) possibly_damaging(0.507) TCGA-ET-A40S-01 1 46655940 46655940 T A POMGNT1 Intron 0.16 TCGA-ET-A40S-01 1 94652132 94652132 G - ARHGAP29 Frame_Shift_Del p.P568Hfs*15 0.15 TCGA-ET-A40S-01 3 42167045 42167045 T G TRAK1 Missense_Mutation p.I75M 0.35 tolerated(0.21) benign(0.369) TCGA-ET-A40S-01 6 158342658 158342658 G A SNX9 Missense_Mutation p.V349I 0.34 deleterious(0.05) benign(0.075) TCGA-ET-A40S-01 7 150936733 150936733 G A SMARCD3 Missense_Mutation p.R425C 0.11 tolerated(0.06) benign(0.002) TCGA-ET-A40S-01 7 99091045 99091045 C A ZNF394 3'UTR 0.18 TCGA-ET-A40S-01 9 85611935 85611936 - A RASEF Frame_Shift_Ins p.M638Yfs*3 0.15 TCGA-ET-A40T-01 10 120450854 120450854 C T CACUL1 Silent p.A316A 0.04 TCGA-ET-A40T-01 10 88854287 88854287 G A GLUD1 Silent p.I80I 0.30 TCGA-ET-A40T-01 11 10524303 10524303 G A AMPD3 Silent p.Q635Q 0.04 TCGA-ET-A40T-01 11 26529693 26529693 G C ANO3 Missense_Mutation p.D159H 0.05 deleterious(0) possibly_damaging(0.841) TCGA-ET-A40T-01 11 64884900 64884900 C T ZNHIT2 Missense_Mutation p.E76K 0.18 deleterious(0.01) benign(0.015) TCGA-ET-A40T-01 11 64981812 64981812 G A CAPN1 3'Flank 0.29 TCGA-ET-A40T-01 12 64491038 64491038 G A SRGAP1 Missense_Mutation p.D566N 0.23 deleterious(0.01) benign(0.101) TCGA-ET-A40T-01 17 19015799 19015799 G A SNORD3D RNA 0.09 TCGA-ET-A40T-01 18 60242771 60242771 G A ZCCHC2 Missense_Mutation p.A1153T 0.26 deleterious(0.01) probably_damaging(0.993) TCGA-ET-A40T-01 18 77794529 77794529 C G RBFA Missense_Mutation p.R12G 0.30 tolerated(0.42) benign(0.001) TCGA-ET-A40T-01 20 42086610 42086610 C T SRSF6 5'UTR 0.26 TCGA-ET-A40T-01 2 110065657 110065657 G A SH3RF3 Silent p.R620R 0.06 TCGA-ET-A40T-01 2 74699791 74699791 G A MRPL53 5'UTR 0.29 TCGA-ET-A40T-01 2 79312700 79312700 G A REG1B Silent p.S117S 0.08 TCGA-ET-A40T-01 5 177311024 177311024 C T RP11-423H2.1 RNA 0.29 TCGA-ET-A40T-01 6 26246947 26246947 C T HIST1H4G Missense_Mutation p.V87M 0.30 deleterious(0.03) possibly_damaging(0.529) TCGA-ET-A40T-01 8 39792628 39792628 T C IDO2 5'UTR 0.31 TCGA-ET-A40T-01 8 39792680 39792680 G A IDO2 5'UTR 0.32 TCGA-ET-A40T-01 9 100227132 100227132 G A TDRD7 Missense_Mutation p.G484D 0.28 deleterious(0) probably_damaging(1) TCGA-ET-A40T-01 9 100616709 100616709 C T FOXE1 Silent p.A171A 0.42 TCGA-ET-A40T-01 9 36923383 36923383 C A PAX5 Silent p.V293V 0.06 TCGA-ET-A40T-01 X 151896692 151896692 G A MAGEA12 3'Flank 0.33 TCGA-ET-A40T-01 X 152815009 152815009 G C ATP2B3 Missense_Mutation p.G465R 0.07 deleterious(0.01) possibly_damaging(0.45) TCGA-ET-A4KN-01 10 73521443 73521443 G A C10orf54 Silent p.S141S 0.07 TCGA-ET-A4KN-01 12 56091578 56091578 T G ITGA7 Missense_Mutation p.K441T 0.05 tolerated(0.17) benign(0.05) TCGA-ET-A4KN-01 12 62986421 62986421 C T MON2 Silent p.C1682C 0.33 TCGA-ET-A4KN-01 15 91517940 91517940 G A PRC1 Nonsense_Mutation p.R409* 0.04 TCGA-ET-A4KN-01 16 55516924 55516924 C G MMP2 Missense_Mutation p.T86R 0.12 deleterious(0) probably_damaging(0.938) TCGA-ET-A4KN-01 17 4634849 4634849 G A MED11 Missense_Mutation p.G22D 0.21 tolerated(0.18) benign(0.14) TCGA-ET-A4KN-01 2 121729541 121729541 G A GLI2 Missense_Mutation p.V362I 0.20 deleterious(0) benign(0.391) TCGA-ET-A4KN-01 2 70900084 70900084 G A ADD2 Missense_Mutation p.A599V 0.17 tolerated(0.35) benign(0.001) TCGA-ET-A4KN-01 4 13597501 13597501 C T BOD1L1 Missense_Mutation p.G2696E 0.10 benign(0.004) TCGA-ET-A4KN-01 6 36651904 36651904 G C CDKN1A Missense_Mutation p.R9P 0.18 deleterious(0.04) benign(0.006) TCGA-ET-A4KN-01 8 27291612 27291612 G A PTK2B Missense_Mutation p.G370S 0.20 tolerated(0.11) benign(0.021) TCGA-ET-A4KN-01 X 135638742 135638742 G A VGLL1 3'UTR 0.08 TCGA-ET-A4KQ-01 11 64577307 64577307 C T MEN1 Missense_Mutation p.R92H 0.09 deleterious(0) probably_damaging(0.974) TCGA-ET-A4KQ-01 12 99119217 99119217 C T APAF1 Missense_Mutation p.P1119S 0.06 tolerated(0.62) benign(0.039) TCGA-ET-A4KQ-01 14 31581716 31581716 C A HECTD1 Missense_Mutation p.D2062Y 0.25 deleterious(0) possibly_damaging(0.854) TCGA-ET-A4KQ-01 17 37455265 37455265 C G FBXL20 Missense_Mutation p.G103R 0.25 tolerated(0.19) benign(0.211) TCGA-ET-A4KQ-01 17 39845179 39845179 C T EIF1 5'UTR 0.33 TCGA-ET-A4KQ-01 1 11008888 11008888 G A C1orf127 Missense_Mutation p.P435L 0.07 tolerated(0.19) probably_damaging(0.93) TCGA-ET-A4KQ-01 2 228399585 228399585 G A AGFG1 Missense_Mutation p.G374E 0.22 tolerated(0.05) possibly_damaging(0.493) TCGA-ET-A4KQ-01 2 39089419 39089419 C A DHX57 Missense_Mutation p.R147L 0.08 deleterious(0.03) benign(0.001) TCGA-ET-A4KQ-01 7 140453134 140453134 T C BRAF Missense_Mutation p.K601E 0.32 deleterious(0) benign(0.411) TCGA-ET-A4KQ-01 8 133899280 133899280 G A TG Missense_Mutation p.E555K 0.28 tolerated(0.85) benign(0.004) TCGA-ET-A4KQ-01 X 154490502 154490502 G A RAB39B Silent p.R76R 0.28 TCGA-FE-A22Z-01 10 105365619 105365619 G A SH3PXD2A Missense_Mutation p.T427I 0.44 deleterious(0) possibly_damaging(0.637) TCGA-FE-A22Z-01 10 106974207 106974207 C T SORCS3 Missense_Mutation p.R795W 0.36 deleterious(0) probably_damaging(0.929) TCGA-FE-A22Z-01 10 133930583 133930583 C T JAKMIP3 Silent p.V46V 0.23 TCGA-FE-A22Z-01 11 125315888 125315888 C T FEZ1 3'UTR 0.47 TCGA-FE-A22Z-01 11 65268525 65268525 A C MALAT1 RNA 0.33 TCGA-FE-A22Z-01 11 65651008 65651008 T C CTSW Silent p.N350N 0.37 TCGA-FE-A22Z-01 13 39587564 39587564 T C PROSER1 Missense_Mutation p.T609A 0.14 tolerated_low_confidence(0.12) benign(0.008) TCGA-FE-A22Z-01 17 17696275 17696275 C T RAI1 Nonsense_Mutation p.R5* 0.62 TCGA-FE-A22Z-01 17 30677219 30677219 C A ZNF207 5'UTR 0.35 TCGA-FE-A22Z-01 17 42170141 42170141 G A HDAC5 Silent p.S226S 0.33 TCGA-FE-A22Z-01 18 19378075 19378075 A T MIB1 Missense_Mutation p.I375F 0.23 deleterious(0) benign(0.001) TCGA-FE-A22Z-01 2 108477236 108477236 T G RGPD4 Missense_Mutation p.N591K 0.36 deleterious(0.01) possibly_damaging(0.727) TCGA-FE-A22Z-01 2 46803383 46803383 G A RHOQ Missense_Mutation p.G120E 0.37 deleterious(0) probably_damaging(0.992) TCGA-FE-A22Z-01 5 37157920 37157920 T C C5orf42 Intron 0.30 TCGA-FE-A22Z-01 6 16306444 16306444 C A ATXN1 3'UTR 0.37 TCGA-FE-A22Z-01 6 32906598 32906598 C T HLA-DMB Missense_Mutation p.G67E 0.48 deleterious(0) probably_damaging(0.993) TCGA-FE-A22Z-01 6 42016285 42016285 G C TAF8 5'Flank 0.45 TCGA-FE-A22Z-01 6 70866046 70866046 G A COL19A1 Missense_Mutation p.V703I 0.56 tolerated(0.39) possibly_damaging(0.454) TCGA-FE-A22Z-01 6 74171794 74171794 G A MTO1 Missense_Mutation p.G73S 0.06 deleterious(0) possibly_damaging(0.538) TCGA-FE-A22Z-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.44 deleterious(0) probably_damaging(0.967) TCGA-FE-A22Z-01 8 145739570 145739570 C T RECQL4 Intron 0.32 TCGA-FE-A22Z-01 9 137690287 137690287 C T COL5A1 Missense_Mutation p.P978S 0.08 unknown(0) TCGA-FE-A22Z-01 X 100383791 100383791 G A CENPI Silent p.R387R 0.36 TCGA-FE-A22Z-01 X 148584995 148584995 C T IDS Missense_Mutation p.V89I 0.17 tolerated(0.41) benign(0.206) TCGA-FE-A22Z-01 X 154157148 154157148 G A F8 Silent p.P1639P 0.24 TCGA-FE-A22Z-01 X 18842187 18842187 G A PPEF1 Missense_Mutation p.E550K 0.32 tolerated(0.29) benign(0.008) TCGA-FE-A22Z-01 X 40988337 40988337 G T USP9X Nonsense_Mutation p.E61* 0.50 TCGA-FE-A230-01 12 94794732 94794732 T C CCDC41 Missense_Mutation p.Y148C 0.31 tolerated(0.06) probably_damaging(0.999) TCGA-FE-A230-01 19 56320297 56320297 G A NLRP11 Missense_Mutation p.T560M 0.15 tolerated(0.15) benign(0.001) TCGA-FE-A230-01 1 16093875 16093875 C T FBLIM1 Silent p.C85C 0.06 TCGA-FE-A230-01 3 133913947 133913948 - G RYK Frame_Shift_Ins p.N288Qfs*66 0.23 TCGA-FE-A230-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-FE-A230-01 8 32505799 32505799 C T NRG1 Intron 0.31 TCGA-FE-A231-01 11 64085693 64085693 A C PRDX5 Silent p.G2G 0.36 TCGA-FE-A231-01 11 6622217 6622217 G A RRP8 Missense_Mutation p.P329L 0.09 deleterious(0.02) possibly_damaging(0.479) TCGA-FE-A231-01 11 67800677 67800677 C T NDUFS8 Missense_Mutation p.A100V 0.10 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-FE-A231-01 14 37838730 37838730 G A MIPOL1 Silent p.R279R 0.06 TCGA-FE-A231-01 15 62995030 62995030 G C TLN2 Missense_Mutation p.Q657H 0.47 tolerated(0.53) benign(0) TCGA-FE-A231-01 16 67697198 67697198 C T ENKD1 Missense_Mutation p.V303I 0.23 tolerated(0.17) benign(0.01) TCGA-FE-A231-01 16 68679244 68679244 C T CDH3 5'UTR 0.44 TCGA-FE-A231-01 16 84456271 84456271 G A ATP2C2 Missense_Mutation p.G271R 0.10 deleterious(0) probably_damaging(1) TCGA-FE-A231-01 1 31742118 31742118 C A SNRNP40 Intron 0.57 TCGA-FE-A231-01 20 21376476 21376476 C T NKX2-4 3'UTR 0.43 TCGA-FE-A231-01 20 32677564 32677564 C G EIF2S2 Missense_Mutation p.R325P 0.35 deleterious(0) possibly_damaging(0.476) TCGA-FE-A231-01 20 51870661 51870661 G A TSHZ2 Missense_Mutation p.A222T 0.26 deleterious(0) probably_damaging(0.999) TCGA-FE-A231-01 22 50615510 50615510 C T PANX2 Silent p.F123F 0.36 TCGA-FE-A231-01 2 44104811 44104811 C A ABCG8 Missense_Mutation p.A623E 0.34 tolerated(1) benign(0) TCGA-FE-A231-01 5 178555009 178555009 G A ADAMTS2 Silent p.Y856Y 0.47 TCGA-FE-A231-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.44 deleterious(0) probably_damaging(0.967) TCGA-FE-A231-01 8 72946042 72946042 A G TRPA1 Missense_Mutation p.L902S 0.34 tolerated(0.4) benign(0.345) TCGA-FE-A231-01 8 86573412 86573412 T A REXO1L1P 3'UTR 0.42 TCGA-FE-A231-01 X 91133972 91133972 A G PCDH11X Silent p.L911L 0.06 TCGA-FE-A232-01 10 6150700 6150700 A C RBM17 Missense_Mutation p.K186T 0.16 tolerated(0.31) benign(0.154) TCGA-FE-A232-01 12 2614030 2614030 A G CACNA1C Missense_Mutation p.D379G 0.38 deleterious(0.03) benign(0.002) TCGA-FE-A232-01 1 155491033 155491033 G C ASH1L Missense_Mutation p.A93G 0.03 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-FE-A232-01 1 52851596 52851596 G A ORC1 Missense_Mutation p.A470V 0.14 tolerated(0.1) benign(0.027) TCGA-FE-A232-01 21 33073397 33073397 T C SCAF4 Missense_Mutation p.I230V 0.24 benign(0.038) TCGA-FE-A232-01 2 101009934 101009934 G A CHST10 Missense_Mutation p.H282Y 0.18 deleterious(0.01) benign(0.178) TCGA-FE-A232-01 4 25678162 25678162 T C SLC34A2 Missense_Mutation p.C622R 0.24 tolerated(0.09) possibly_damaging(0.894) TCGA-FE-A232-01 5 154393468 154393468 C T KIF4B Missense_Mutation p.R17C 0.21 deleterious(0) probably_damaging(1) TCGA-FE-A232-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-FE-A232-01 X 99943267 99943273 TCCCGAA - SYTL4 Intron 0.27 TCGA-FE-A233-01 10 121618395 121618395 C A MCMBP Splice_Site p.X109_splice 0.06 TCGA-FE-A233-01 10 63170274 63170274 C T TMEM26 Missense_Mutation p.V305M 0.14 deleterious(0.03) benign(0.028) TCGA-FE-A233-01 12 4657258 4657258 G A RAD51AP1 Missense_Mutation p.S124N 0.05 tolerated(0.35) benign(0.012) TCGA-FE-A233-01 13 102235682 102235682 C A ITGBL1 Silent p.R282R 0.40 TCGA-FE-A233-01 16 61687975 61687975 C T CDH8 Missense_Mutation p.R646Q 0.05 tolerated(0.11) probably_damaging(0.992) TCGA-FE-A233-01 17 62856224 62856224 G A LRRC37A3 Missense_Mutation p.A1347V 0.04 tolerated(1) benign(0) TCGA-FE-A233-01 1 158576999 158576999 C A OR10Z1 Missense_Mutation p.F257L 0.05 deleterious(0.02) benign(0.401) TCGA-FE-A233-01 1 94017855 94017855 G A FNBP1L Intron 0.07 TCGA-FE-A233-01 3 115571362 115571362 G A LSAMP Missense_Mutation p.A206V 0.45 deleterious(0.04) possibly_damaging(0.691) TCGA-FE-A233-01 3 48667529 48667529 A G SLC26A6 Missense_Mutation p.M463T 0.06 deleterious(0) benign(0.003) TCGA-FE-A233-01 6 109308727 109308727 T C SESN1 3'UTR 0.38 TCGA-FE-A233-01 6 17765031 17765031 C T KIF13A Silent p.L1576L 0.08 TCGA-FE-A233-01 6 51523917 51523917 C T PKHD1 Silent p.S3669S 0.05 TCGA-FE-A233-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-FE-A233-01 X 19506981 19506981 G T MAP3K15 Missense_Mutation p.H156N 0.29 tolerated(0.38) benign(0.387) TCGA-FE-A234-01 12 56398924 56398924 T C SUOX 3'UTR 0.31 TCGA-FE-A234-01 15 74710610 74710610 C A SEMA7A Missense_Mutation p.R124L 0.06 tolerated(0.23) benign(0) TCGA-FE-A234-01 16 84089661 84089661 G T MBTPS1 Missense_Mutation p.Q971K 0.26 tolerated_low_confidence(0.44) benign(0.023) TCGA-FE-A234-01 17 58308908 58308908 C A USP32 Intron 0.35 TCGA-FE-A234-01 19 33137489 33137489 T C ANKRD27 Silent p.L82L 0.05 TCGA-FE-A234-01 19 38934209 38934209 C T RYR1 Silent p.G94G 0.36 TCGA-FE-A234-01 1 39877399 39877399 A T KIAA0754 Missense_Mutation p.N352Y 0.24 benign(0.004) TCGA-FE-A234-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-FE-A234-01 9 134455701 134455701 T C RAPGEF1 Missense_Mutation p.K1029R 0.21 deleterious(0) possibly_damaging(0.646) TCGA-FE-A235-01 11 116693873 116693873 A - APOA4 Frame_Shift_Del p.L12Rfs*19 0.32 TCGA-FE-A235-01 17 48680555 48680555 G A CACNA1G Silent p.P1388P 0.36 TCGA-FE-A235-01 1 153660571 153660571 G A NPR1 Missense_Mutation p.R764Q 0.37 deleterious(0.01) probably_damaging(0.998) TCGA-FE-A235-01 1 154841828 154841828 C T KCNN3 Missense_Mutation p.G205S 0.50 tolerated(0.87) benign(0.002) TCGA-FE-A235-01 4 68939712 68939712 G A TMPRSS11F Nonsense_Mutation p.R100* 0.36 TCGA-FE-A235-01 4 9982230 9982230 C T SLC2A9 Missense_Mutation p.E223K 0.09 tolerated(0.06) possibly_damaging(0.537) TCGA-FE-A235-01 5 172752921 172752921 G A STC2 Missense_Mutation p.H82Y 0.03 tolerated(0.38) probably_damaging(0.977) TCGA-FE-A235-01 5 23526762 23526762 C T PRDM9 Missense_Mutation p.A522V 0.06 tolerated(0.5) possibly_damaging(0.757) TCGA-FE-A235-01 6 160664756 160664757 AT - SLC22A2 Frame_Shift_Del p.I376Lfs*11 0.35 TCGA-FE-A235-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-FE-A235-01 9 95030578 95030578 G C IARS Missense_Mutation p.P437A 0.09 deleterious(0) probably_damaging(0.981) TCGA-FE-A235-01 X 125298907 125298907 G A DCAF12L2 Missense_Mutation p.P334L 0.37 tolerated(0.58) benign(0.003) TCGA-FE-A235-01 X 133527567 133527567 G T PHF6 Missense_Mutation p.G93C 0.08 deleterious(0) probably_damaging(0.993) TCGA-FE-A236-01 10 118960781 118960781 C T KCNK18 Missense_Mutation p.T112M 0.33 deleterious(0) probably_damaging(0.944) TCGA-FE-A236-01 16 28188591 28188605 AGAGAAAGTACAGGC - XPO6 In_Frame_Del p.C48_L52del 0.32 TCGA-FE-A236-01 17 53798052 53798052 G T TMEM100 Missense_Mutation p.A127E 0.16 tolerated(0.09) possibly_damaging(0.678) TCGA-FE-A236-01 19 44571461 44571461 A G ZNF223 3'UTR 0.31 TCGA-FE-A236-01 19 57328594 57328594 C T PEG3 Missense_Mutation p.D406N 0.05 tolerated(0.33) benign(0.006) TCGA-FE-A236-01 1 2121143 2121143 G A C1orf86 3'UTR 0.30 TCGA-FE-A236-01 20 5903597 5903597 T C CHGB Silent p.D269D 0.31 TCGA-FE-A236-01 2 175673728 175673728 A G CHN1 Missense_Mutation p.I336T 0.14 tolerated(0.06) probably_damaging(0.932) TCGA-FE-A236-01 2 96933105 96933105 C T CIAO1 Silent p.R62R 0.33 TCGA-FE-A236-01 3 167051707 167051707 C T ZBBX Missense_Mutation p.D199N 0.44 deleterious(0.04) benign(0.089) TCGA-FE-A236-01 4 1244489 1244489 G T CTBP1 5'Flank 0.42 TCGA-FE-A236-01 5 26881211 26881211 C G CDH9 3'UTR 0.37 TCGA-FE-A236-01 5 34923115 34923115 G A BRIX1 Missense_Mutation p.E174K 0.33 tolerated(0.91) benign(0.005) TCGA-FE-A236-01 6 155145452 155145452 A G SCAF8 Missense_Mutation p.S671G 0.44 tolerated(0.74) possibly_damaging(0.559) TCGA-FE-A236-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.44 deleterious(0) probably_damaging(0.967) TCGA-FE-A237-01 11 62389352 62389352 G A B3GAT3 Missense_Mutation p.A23V 0.11 tolerated(0.59) benign(0.137) TCGA-FE-A237-01 17 7667276 7667276 G A DNAH2 Missense_Mutation p.A1036T 0.10 benign(0) TCGA-FE-A237-01 19 43259223 43259223 C G PSG8 Missense_Mutation p.R302T 0.09 tolerated(0.65) probably_damaging(0.948) TCGA-FE-A237-01 1 51439960 51439960 C A CDKN2C 3'UTR 0.45 TCGA-FE-A237-01 3 112644003 112644003 T A CD200R1 Silent p.P269P 0.07 TCGA-FE-A237-01 3 112644004 112644004 G A CD200R1 Missense_Mutation p.P269L 0.07 tolerated(0.92) benign(0.001) TCGA-FE-A237-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-FE-A23A-01 14 20528322 20528322 T A OR4L1 Missense_Mutation p.M40K 0.36 deleterious(0) benign(0.002) TCGA-FE-A23A-01 15 76016482 76016482 C G ODF3L1 5'UTR 0.16 TCGA-FE-A23A-01 16 55732393 55732393 G A SLC6A2 Missense_Mutation p.V468I 0.13 tolerated(0.11) possibly_damaging(0.458) TCGA-FE-A23A-01 16 57474766 57474766 C T CIAPIN1 Silent p.L25L 0.12 TCGA-FE-A23A-01 19 50165681 50165681 C T IRF3 Splice_Site p.X201_splice 0.26 TCGA-FE-A23A-01 2 37088300 37088300 G C STRN Silent p.P548P 0.08 TCGA-FE-A23A-01 6 74528131 74528131 G A CD109 Missense_Mutation p.S1311N 0.18 deleterious(0.02) possibly_damaging(0.566) TCGA-FE-A23A-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.31 deleterious(0) probably_damaging(0.967) TCGA-FE-A23A-01 X 100668067 100668067 C T HNRNPH2 Missense_Mutation p.T364I 0.29 deleterious(0.02) benign(0.311) TCGA-FE-A23A-01 X 153186831 153186831 C G ARHGAP4 Missense_Mutation p.R141P 0.14 deleterious(0) probably_damaging(0.975) TCGA-FE-A3PA-01 10 35320510 35320510 G A CUL2 Missense_Mutation p.A422V 0.40 deleterious(0.04) possibly_damaging(0.607) TCGA-FE-A3PA-01 11 64572151 64572151 C T MEN1 Silent p.K501K 0.09 TCGA-FE-A3PA-01 12 6438738 6438738 G A TNFRSF1A Missense_Mutation p.R370C 0.07 deleterious(0) probably_damaging(1) TCGA-FE-A3PA-01 5 140580279 140580279 C T PCDHB11 Missense_Mutation p.T311M 0.38 deleterious_low_confidence(0.04) benign(0.108) TCGA-FE-A3PB-01 12 10954956 10954956 A G TAS2R7 Missense_Mutation p.Y72H 0.35 tolerated(0.16) benign(0.037) TCGA-FE-A3PB-01 19 19010463 19010463 T G COPE 3'UTR 0.19 TCGA-FE-A3PB-01 5 140750149 140750149 C T PCDHGB3 Missense_Mutation p.T63I 0.28 tolerated(0.06) benign(0.235) TCGA-FE-A3PB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.28 deleterious(0) probably_damaging(0.967) TCGA-FE-A3PC-01 10 104465155 104465155 G A ARL3 Missense_Mutation p.T32I 0.04 deleterious(0) probably_damaging(1) TCGA-FE-A3PC-01 11 128360384 128360384 G C ETS1 Missense_Mutation p.T101S 0.08 tolerated(0.39) benign(0.002) TCGA-FE-A3PC-01 11 55798723 55798723 T C OR5AS1 Missense_Mutation p.F277L 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-FE-A3PC-01 12 48391978 48391978 T C COL2A1 Missense_Mutation p.K106E 0.06 unknown(0) TCGA-FE-A3PC-01 14 64457230 64457230 A G SYNE2 Silent p.Q805Q 0.03 TCGA-FE-A3PC-01 16 4810510 4810510 G A ZNF500 Missense_Mutation p.A248V 0.20 tolerated(0.6) benign(0.001) TCGA-FE-A3PC-01 17 31082524 31082524 A T MYO1D Missense_Mutation p.F485I 0.10 deleterious(0) benign(0.367) TCGA-FE-A3PC-01 17 62750766 62750766 C A hsa-mir-6080 RNA 0.36 TCGA-FE-A3PC-01 19 10930718 10930718 C T DNM2 Silent p.G578G 0.11 TCGA-FE-A3PC-01 19 15224522 15224522 C T SYDE1 Silent p.A652A 0.04 TCGA-FE-A3PC-01 19 43922526 43922526 C A TEX101 Missense_Mutation p.P261T 0.14 tolerated(0.59) benign(0.065) TCGA-FE-A3PC-01 19 50944246 50944246 A G MYBPC2 Missense_Mutation p.K228E 0.15 deleterious(0) benign(0.297) TCGA-FE-A3PC-01 1 115828959 115828959 T C NGF Missense_Mutation p.K153R 0.03 tolerated(0.66) probably_damaging(0.995) TCGA-FE-A3PC-01 1 155701824 155701824 G T DAP3 Missense_Mutation p.K331N 0.09 deleterious(0.02) benign(0.297) TCGA-FE-A3PC-01 1 159799959 159799959 A T SLAMF8 Missense_Mutation p.Q115L 0.42 deleterious(0.02) benign(0.269) TCGA-FE-A3PC-01 1 201333480 201333480 G A TNNT2 Silent p.A135A 0.05 TCGA-FE-A3PC-01 1 28176693 28176693 C T PPP1R8 Silent p.Y264Y 0.10 TCGA-FE-A3PC-01 1 93965084 93965084 T C FNBP1L Silent p.Y28Y 0.18 TCGA-FE-A3PC-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.11 tolerated(0.05) possibly_damaging(0.704) TCGA-FE-A3PC-01 4 62598711 62598711 G T LPHN3 Missense_Mutation p.V212L 0.07 deleterious(0.04) probably_damaging(0.998) TCGA-FE-A3PC-01 6 151757610 151757610 C T RMND1 Missense_Mutation p.G195E 0.14 deleterious(0.01) probably_damaging(0.978) TCGA-FE-A3PC-01 6 3226415 3226415 G C TUBB2B Missense_Mutation p.F85L 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.839) TCGA-FE-A3PC-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-FE-A3PC-01 8 81888740 81888740 A G PAG1 3'UTR 0.16 TCGA-FE-A3PC-01 9 6893216 6893216 G A KDM4C Missense_Mutation p.G302E 0.04 deleterious(0) probably_damaging(1) TCGA-FE-A3PD-01 11 65266387 65266387 A G MALAT1 RNA 0.37 TCGA-FE-A3PD-01 13 21306248 21306248 C G N6AMT2 Silent p.V80V 0.35 TCGA-FE-A3PD-01 18 21484047 21484047 G A LAMA3 Missense_Mutation p.E2157K 0.42 probably_damaging(0.983) TCGA-FE-A3PD-01 19 44570331 44570331 C G ZNF223 Missense_Mutation p.S117C 0.46 deleterious(0.03) benign(0.013) TCGA-FE-A3PD-01 1 152009414 152009414 G A S100A11 5'UTR 0.39 TCGA-FE-A3PD-01 1 158669597 158669597 C G OR6K2 Missense_Mutation p.L282F 0.45 tolerated(0.07) benign(0.424) TCGA-FE-A3PD-01 1 79095498 79095498 G T IFI44L Silent p.G207G 0.07 TCGA-FE-A3PD-01 3 125701153 125701153 C T ROPN1B Missense_Mutation p.S146L 0.33 deleterious(0) benign(0.318) TCGA-FE-A3PD-01 5 40979879 40979879 C G C7 Missense_Mutation p.L740V 0.46 deleterious(0) possibly_damaging(0.869) TCGA-FE-A3PD-01 6 151153024 151153024 G C PLEKHG1 Missense_Mutation p.G926A 0.37 deleterious(0.03) benign(0.014) TCGA-FE-A3PD-01 7 150714349 150714349 G A ATG9B Missense_Mutation p.A688V 0.05 tolerated(0.26) benign(0.446) TCGA-FK-A3S3-01 10 27332479 27332479 C T ANKRD26 Silent p.Q679Q 0.35 TCGA-FK-A3S3-01 11 67076991 67076991 G A SSH3 Silent p.T395T 0.06 TCGA-FK-A3S3-01 12 46322574 46322574 T A SCAF11 Missense_Mutation p.T304S 0.05 tolerated(0.33) possibly_damaging(0.459) TCGA-FK-A3S3-01 15 52521333 52521333 G C MYO5C Silent p.V1068V 0.31 TCGA-FK-A3S3-01 1 180913724 180913724 C T KIAA1614 Intron 0.29 TCGA-FK-A3S3-01 1 220153563 220153567 AAGTC - EPRS Frame_Shift_Del p.D1191Ifs*6 0.22 TCGA-FK-A3S3-01 2 29474098 29474098 G A ALK Missense_Mutation p.P693S 0.09 deleterious(0.03) possibly_damaging(0.835) TCGA-FK-A3S3-01 3 136646925 136646925 A G NCK1 Missense_Mutation p.R28G 0.43 deleterious(0) possibly_damaging(0.601) TCGA-FK-A3S3-01 5 131995905 131995905 G A IL13 Silent p.E124E 0.05 TCGA-FK-A3S3-01 6 35911619 35911619 C A SLC26A8 3'UTR 0.33 TCGA-FK-A3S3-01 9 138586908 138586908 G T SOHLH1 Missense_Mutation p.A288E 0.14 tolerated(0.15) benign(0.1) TCGA-FK-A3S3-01 9 75445596 75445596 C T TMC1 Missense_Mutation p.A753V 0.27 deleterious(0.04) unknown(0) TCGA-FK-A3SB-01 11 47189578 47189578 A G ARFGAP2 Missense_Mutation p.F363L 0.04 tolerated(0.27) possibly_damaging(0.685) TCGA-FK-A3SB-01 16 72845826 72845826 G C ZFHX3 Missense_Mutation p.A1214G 0.35 benign(0.095) TCGA-FK-A3SB-01 19 19750895 19750895 T C GMIP Missense_Mutation p.Q179R 0.26 deleterious(0) probably_damaging(0.93) TCGA-FK-A3SB-01 1 6511719 6511719 G C ESPN Missense_Mutation p.E658Q 0.13 deleterious(0.02) probably_damaging(0.974) TCGA-FK-A3SB-01 22 38251638 38251638 A G EIF3L Silent p.P120P 0.23 TCGA-FK-A3SB-01 3 87017837 87017837 T C VGLL3 Silent p.T280T 0.23 TCGA-FK-A3SB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-FK-A3SD-01 10 23292246 23292246 A G ARMC3 Missense_Mutation p.N545S 0.15 tolerated(0.46) benign(0.009) TCGA-FK-A3SD-01 11 110035909 110035909 A G ZC3H12C Missense_Mutation p.K700R 0.04 deleterious(0.03) possibly_damaging(0.826) TCGA-FK-A3SD-01 11 126134958 126134958 G A SRPR Missense_Mutation p.A474V 0.05 deleterious(0.02) possibly_damaging(0.543) TCGA-FK-A3SD-01 11 64415766 64415766 C T NRXN2 Missense_Mutation p.V1110I 0.04 tolerated(0.31) probably_damaging(0.993) TCGA-FK-A3SD-01 11 66807525 66807525 G A SYT12 Missense_Mutation p.V158M 0.04 deleterious(0.03) probably_damaging(0.921) TCGA-FK-A3SD-01 12 26731693 26731693 G A ITPR2 Missense_Mutation p.A1528V 0.09 tolerated(0.4) benign(0.002) TCGA-FK-A3SD-01 12 56500441 56500441 A G RP11-603J24.9 Missense_Mutation p.D34G 0.36 deleterious(0) probably_damaging(0.998) TCGA-FK-A3SD-01 14 30133033 30133033 A G PRKD1 Missense_Mutation p.F190L 0.05 tolerated(0.09) possibly_damaging(0.479) TCGA-FK-A3SD-01 16 28620147 28620147 C T SULT1A1 Silent p.P10P 0.11 TCGA-FK-A3SD-01 17 1381773 1381773 G A MYO1C Missense_Mutation p.P409L 0.05 tolerated(0.25) benign(0.015) TCGA-FK-A3SD-01 18 120732 120732 G A ROCK1P1 RNA 0.06 TCGA-FK-A3SD-01 19 35757281 35757281 A T LSR Silent p.A314A 0.03 TCGA-FK-A3SD-01 19 53208567 53208567 G C ZNF611 Missense_Mutation p.L581V 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-FK-A3SD-01 22 24896072 24896072 T G UPB1 Intron 0.17 TCGA-FK-A3SD-01 2 48066119 48066119 G A FBXO11 Nonsense_Mutation p.Q156* 0.04 TCGA-FK-A3SD-01 4 69107516 69107516 G A TMPRSS11B Silent p.G5G 0.29 TCGA-FK-A3SD-01 4 69962710 69962710 G A UGT2B7 Missense_Mutation p.E158K 0.24 deleterious(0) possibly_damaging(0.452) TCGA-FK-A3SD-01 6 33283595 33283595 G A ZBTB22 Missense_Mutation p.P367S 0.08 tolerated(0.3) possibly_damaging(0.637) TCGA-FK-A3SD-01 6 37254821 37254821 G A TBC1D22B Silent p.P280P 0.42 TCGA-FK-A3SD-01 7 37172827 37172827 G C ELMO1 Missense_Mutation p.P367A 0.29 deleterious(0) possibly_damaging(0.803) TCGA-FK-A3SD-01 X 30254993 30254993 G A MAGEB3 Missense_Mutation p.V318I 0.07 deleterious(0.02) benign(0.004) TCGA-FK-A3SE-01 16 67986272 67986272 C T SLC12A4 Silent p.S246S 0.35 TCGA-FK-A3SE-01 16 72993778 72993778 G A ZFHX3 Silent p.A89A 0.12 TCGA-FK-A3SE-01 19 15073100 15073100 C T SLC1A6 Missense_Mutation p.G217R 0.35 tolerated(0.44) benign(0.044) TCGA-FK-A3SE-01 2 238667405 238667405 G T LRRFIP1 Intron 0.41 TCGA-FK-A3SE-01 5 1280418 1280418 G A TERT Missense_Mutation p.S602L 0.05 deleterious(0.01) probably_damaging(0.963) TCGA-FK-A3SE-01 5 132334494 132334494 G A ZCCHC10 Silent p.A98A 0.39 TCGA-FK-A3SE-01 9 139008660 139008660 G A C9orf69 Silent p.R29R 0.36 TCGA-FK-A3SG-01 10 122619684 122619684 A G WDR11 Missense_Mutation p.N139S 0.05 tolerated(0.5) benign(0.002) TCGA-FK-A3SG-01 10 45954618 45954618 T C MARCH8 Missense_Mutation p.Y174C 0.06 tolerated(0.07) possibly_damaging(0.762) TCGA-FK-A3SG-01 11 60777117 60777117 C T CD6 Silent p.V285V 0.10 TCGA-FK-A3SG-01 14 68054069 68054069 G A PLEKHH1 3'UTR 0.38 TCGA-FK-A3SG-01 16 461481 461481 C T DECR2 Missense_Mutation p.T261M 0.27 deleterious(0) probably_damaging(0.995) TCGA-FK-A3SG-01 19 1109539 1109539 G A SBNO2 Missense_Mutation p.T1061M 0.15 tolerated(0.05) benign(0.068) TCGA-FK-A3SG-01 19 40146576 40146576 C T LGALS16 5'UTR 0.38 TCGA-FK-A3SG-01 19 58966764 58966764 G C ZNF324B Silent p.S151S 0.37 TCGA-FK-A3SG-01 1 10394681 10394681 G A KIF1B Missense_Mutation p.V964I 0.04 tolerated(0.22) possibly_damaging(0.699) TCGA-FK-A3SG-01 4 57340448 57340448 G C SRP72 Missense_Mutation p.E167D 0.03 tolerated(0.24) benign(0.033) TCGA-FK-A3SG-01 5 70858315 70858315 C T BDP1 Nonsense_Mutation p.Q2571* 0.17 TCGA-FK-A3SG-01 X 105970419 105970419 G T RNF128 Silent p.A92A 0.19 TCGA-FK-A3SH-01 10 43606831 43606831 A G RET Silent p.E480E 0.29 TCGA-FK-A3SH-01 10 81058872 81058872 C T ZMIZ1 Missense_Mutation p.R578C 0.07 probably_damaging(0.998) TCGA-FK-A3SH-01 11 119244101 119244101 G A USP2 Silent p.Y30Y 0.06 TCGA-FK-A3SH-01 11 73759286 73759286 G A C2CD3 Missense_Mutation p.A1820V 0.19 tolerated(0.28) benign(0.008) TCGA-FK-A3SH-01 11 74911324 74911324 C A SLCO2B1 Missense_Mutation p.S552Y 0.05 deleterious(0) probably_damaging(0.989) TCGA-FK-A3SH-01 12 56748323 56748323 C T STAT2 Missense_Mutation p.E237K 0.05 deleterious(0.02) possibly_damaging(0.864) TCGA-FK-A3SH-01 13 51915275 51915275 C T SERPINE3 Silent p.L16L 0.23 TCGA-FK-A3SH-01 1 176993813 176993813 G A ASTN1 Silent p.T392T 0.05 TCGA-FK-A3SH-01 1 18807491 18807491 G A KLHDC7A Missense_Mutation p.A6T 0.22 tolerated(0.07) benign(0.03) TCGA-FK-A3SH-01 1 196715005 196715005 C T CFH Silent p.F1123F 0.07 TCGA-FK-A3SH-01 1 203097940 203097940 G A ADORA1 5'UTR 0.15 TCGA-FK-A3SH-01 20 44420653 44420653 A T DNTTIP1 Missense_Mutation p.T4S 0.56 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-FK-A3SH-01 2 176965332 176965332 C A HOXD12 Missense_Mutation p.N219K 0.15 deleterious(0.01) possibly_damaging(0.883) TCGA-FK-A3SH-01 2 98809456 98809456 G A VWA3B Missense_Mutation p.S521N 0.04 tolerated(0.28) benign(0.068) TCGA-FK-A3SH-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.35 deleterious(0) probably_damaging(0.967) TCGA-FK-A3SH-01 9 137716627 137716627 G A COL5A1 Missense_Mutation p.R1627Q 0.07 unknown(0) TCGA-FK-A3SH-01 9 79324138 79324139 - TGACTGTTGCAG PRUNE2 In_Frame_Ins p.Q1017_S1018insLQQS 0.13 TCGA-FK-A3SH-01 X 100630267 100630267 G A BTK Silent p.A2A 0.08 TCGA-FK-A3SH-01 X 71360504 71360504 A C NHSL2 Missense_Mutation p.I1036L 0.09 deleterious(0.01) benign(0.046) TCGA-FK-A4UB-01 13 32527237 32527237 G A EEF1DP3 RNA 0.13 TCGA-FK-A4UB-01 14 92484052 92484052 T C TRIP11 Missense_Mutation p.I211V 0.50 tolerated(0.2) probably_damaging(0.99) TCGA-FK-A4UB-01 17 73830422 73830422 C T UNC13D Missense_Mutation p.R761H 0.20 tolerated(0.1) benign(0.006) TCGA-FK-A4UB-01 1 19525140 19525140 G A UBR4 Silent p.S181S 0.42 TCGA-FK-A4UB-01 21 45542224 45542224 C T PWP2 Silent p.H601H 0.44 TCGA-FK-A4UB-01 22 32889228 32889228 C - FBXO7 Frame_Shift_Del p.P369Hfs*44 0.23 TCGA-FK-A4UB-01 4 82369389 82369389 T C RASGEF1B Missense_Mutation p.K163R 0.05 tolerated(0.63) benign(0.008) TCGA-FY-A2QD-01 10 100189586 100189586 G A HPS1 Missense_Mutation p.H277Y 0.08 tolerated(0.68) benign(0.062) TCGA-FY-A2QD-01 11 16810715 16810715 C T PLEKHA7 Silent p.L1095L 0.06 TCGA-FY-A2QD-01 12 21028307 21028307 A - SLCO1B3 Frame_Shift_Del p.R290Efs*10 0.31 TCGA-FY-A2QD-01 17 76089711 76089711 G A TNRC6C Silent p.P1388P 0.16 TCGA-FY-A2QD-01 20 4839991 4839991 G T SLC23A2 Missense_Mutation p.T555K 0.30 tolerated(0.07) benign(0.126) TCGA-FY-A2QD-01 4 73941941 73941941 A T ANKRD17 3'UTR 0.19 TCGA-FY-A2QD-01 6 36475299 36475299 G A STK38 Silent p.N250N 0.39 TCGA-FY-A2QD-01 8 1649537 1649537 G A DLGAP2 Missense_Mutation p.E965K 0.50 deleterious(0) probably_damaging(0.999) TCGA-FY-A2QD-01 X 103498972 103498972 C T ESX1 Silent p.P123P 0.13 TCGA-FY-A2QD-01 X 153296900 153296900 G A MECP2 Missense_Mutation p.P139S 0.10 tolerated(0.23) benign(0.24) TCGA-FY-A3BL-01 11 113644351 113644351 C T ZW10 Missense_Mutation p.G13E 0.36 deleterious(0) probably_damaging(1) TCGA-FY-A3BL-01 11 118375798 118375798 A G KMT2A Missense_Mutation p.N3064S 0.21 benign(0.376) TCGA-FY-A3BL-01 11 62655827 62655827 C A SLC3A2 Missense_Mutation p.L520I 0.11 tolerated(0.21) possibly_damaging(0.618) TCGA-FY-A3BL-01 12 64615867 64615867 A G C12orf66 Missense_Mutation p.W51R 0.12 deleterious(0) probably_damaging(0.997) TCGA-FY-A3BL-01 20 23731411 23731411 C T CST1 Silent p.P31P 0.08 TCGA-FY-A3BL-01 3 168833185 168833185 C A MECOM Missense_Mutation p.M702I 0.11 deleterious(0.03) probably_damaging(0.986) TCGA-FY-A3BL-01 4 159568291 159568291 C T RXFP1 Missense_Mutation p.P565L 0.43 deleterious(0) probably_damaging(1) TCGA-FY-A3BL-01 6 42713803 42713803 G A TBCC Silent p.S3S 0.11 TCGA-FY-A3BL-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-FY-A3I4-01 17 38318284 38318284 G A CASC3 Silent p.V162V 0.14 TCGA-FY-A3I4-01 19 47770012 47770012 T C CCDC9 Missense_Mutation p.W289R 0.12 deleterious(0) probably_damaging(1) TCGA-FY-A3I4-01 19 53014631 53014631 C G ZNF578 Missense_Mutation p.H333D 0.16 deleterious(0.01) benign(0.005) TCGA-FY-A3I4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-FY-A3I4-01 9 102591251 102591251 C A NR4A3 Nonsense_Mutation p.C320* 0.14 TCGA-FY-A3I4-01 9 134072930 134072930 A G NUP214 Missense_Mutation p.N1350S 0.12 benign(0) TCGA-FY-A3I4-01 X 128649760 128649760 C G SMARCA1 Silent p.V178V 0.18 TCGA-FY-A3I5-01 11 113631247 113631247 C A ZW10 Missense_Mutation p.Q136H 0.27 tolerated(0.15) benign(0.005) TCGA-FY-A3I5-01 12 110353299 110353299 C G TCHP Missense_Mutation p.A471G 0.55 tolerated(0.15) benign(0.207) TCGA-FY-A3I5-01 12 50524255 50524255 G A CERS5 3'UTR 0.18 TCGA-FY-A3I5-01 14 59797945 59797945 A G DAAM1 Missense_Mutation p.I527V 0.08 tolerated(1) unknown(0) TCGA-FY-A3I5-01 14 77845094 77845094 A - SAMD15 Frame_Shift_Del p.R446Efs*6 0.33 TCGA-FY-A3I5-01 16 53504454 53504454 C G RBL2 Missense_Mutation p.P802R 0.04 deleterious(0.01) benign(0.125) TCGA-FY-A3I5-01 17 41141502 41141502 G T RUNDC1 Nonsense_Mutation p.E268* 0.26 TCGA-FY-A3I5-01 18 22805082 22805082 C T ZNF521 Missense_Mutation p.V934M 0.17 deleterious(0.01) possibly_damaging(0.906) TCGA-FY-A3I5-01 1 38032316 38032316 T C DNALI1 3'UTR 0.22 TCGA-FY-A3I5-01 1 89579760 89579760 A G GBP2 Missense_Mutation p.I363T 0.29 tolerated(0.13) possibly_damaging(0.717) TCGA-FY-A3I5-01 22 38951410 38951410 A G DMC1 Silent p.L111L 0.03 TCGA-FY-A3I5-01 22 39112749 39112749 G A GTPBP1 Missense_Mutation p.R193H 0.05 deleterious(0) probably_damaging(0.977) TCGA-FY-A3I5-01 2 24299183 24299183 T C SF3B14 5'UTR 0.14 TCGA-FY-A3I5-01 3 77623657 77623657 G A ROBO2 Missense_Mutation p.R676H 0.33 tolerated(0.08) possibly_damaging(0.694) TCGA-FY-A3I5-01 5 133311612 133311612 G A VDAC1 Missense_Mutation p.R218C 0.21 tolerated(0.17) benign(0.002) TCGA-FY-A3I5-01 8 49643961 49643961 G A EFCAB1 Nonsense_Mutation p.R54* 0.24 TCGA-FY-A3I5-01 9 101597558 101597558 T C GALNT12 Silent p.F315F 0.50 TCGA-FY-A3I5-01 X 71864258 71864258 G A PHKA1 Silent p.I471I 0.26 TCGA-FY-A3NM-01 12 58016597 58016597 G T SLC26A10 Silent p.L273L 0.04 TCGA-FY-A3NM-01 14 88658695 88658695 G A KCNK10 Silent p.A247A 0.03 TCGA-FY-A3NM-01 15 65739246 65739246 A C DPP8 Silent p.R891R 0.47 TCGA-FY-A3NM-01 15 65877142 65877142 T C VWA9 Missense_Mutation p.N345S 0.36 tolerated(0.22) benign(0.133) TCGA-FY-A3NM-01 19 50156758 50156758 G A SCAF1 Missense_Mutation p.E1038K 0.20 unknown(0) TCGA-FY-A3NM-01 19 50905714 50905714 C A POLD1 Missense_Mutation p.F254L 0.12 tolerated(0.08) probably_damaging(0.983) TCGA-FY-A3NM-01 1 43748745 43748745 G A C1orf210 Missense_Mutation p.S18F 0.21 deleterious(0) possibly_damaging(0.805) TCGA-FY-A3NM-01 22 50752105 50752105 G A DENND6B Missense_Mutation p.R418W 0.15 deleterious(0) probably_damaging(0.927) TCGA-FY-A3NM-01 2 25497865 25497865 G A DNMT3A Missense_Mutation p.P195L 0.32 tolerated(0.2) benign(0.005) TCGA-FY-A3NM-01 4 107956763 107956763 G A DKK2 5'UTR 0.04 TCGA-FY-A3NM-01 4 73013276 73013276 A G NPFFR2 Missense_Mutation p.N439S 0.26 tolerated(0.07) probably_damaging(0.948) TCGA-FY-A3NM-01 6 35923195 35923195 C G SLC26A8 Missense_Mutation p.A656P 0.40 tolerated(0.28) benign(0.167) TCGA-FY-A3NM-01 6 49753597 49753597 C T PGK2 3'UTR 0.38 TCGA-FY-A3NM-01 6 83075016 83075016 G T TPBG Missense_Mutation p.R113L 0.19 tolerated(0.08) possibly_damaging(0.491) TCGA-FY-A3NM-01 7 100815722 100815722 G A NAT16 Missense_Mutation p.R250W 0.12 tolerated(0.23) benign(0.007) TCGA-FY-A3NM-01 9 17236415 17236415 G A CNTLN Silent p.K226K 0.20 TCGA-FY-A3NN-01 11 69625427 69625427 G A FGF3 Silent p.H122H 0.04 TCGA-FY-A3NN-01 12 52756206 52756206 G A KRT85 Missense_Mutation p.A376V 0.06 tolerated(0.12) possibly_damaging(0.649) TCGA-FY-A3NN-01 16 31336828 31336828 G A ITGAM Missense_Mutation p.R839H 0.41 tolerated(0.56) benign(0.003) TCGA-FY-A3NN-01 19 50838162 50838162 G A NAPSB RNA 0.08 TCGA-FY-A3NN-01 1 19948613 19948613 A T MINOS1 Silent p.G28G 0.18 TCGA-FY-A3NN-01 21 38573910 38573910 T G TTC3 3'UTR 0.16 TCGA-FY-A3NN-01 2 166770121 166770121 A G TTC21B Missense_Mutation p.F725S 0.27 tolerated(0.44) benign(0.062) TCGA-FY-A3NN-01 3 52266070 52266070 G A TWF2 Silent p.L58L 0.07 TCGA-FY-A3NN-01 4 75147202 75147202 G A MTHFD2L Missense_Mutation p.G289D 0.05 deleterious(0) probably_damaging(1) TCGA-FY-A3NN-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-FY-A3NN-01 7 51111289 51111289 C T COBL Silent p.A399A 0.05 TCGA-FY-A3NN-01 8 139658912 139658912 G A COL22A1 Missense_Mutation p.P1154L 0.38 unknown(0) TCGA-FY-A3NN-01 8 144733418 144733418 A G ZNF623 Missense_Mutation p.Y459C 0.42 deleterious(0) probably_damaging(0.993) TCGA-FY-A3NN-01 9 131112801 131112801 G A SLC27A4 Missense_Mutation p.R275H 0.09 tolerated(0.57) probably_damaging(0.946) TCGA-FY-A3NP-01 10 135440166 135440166 G T FRG2B Silent p.I27I 0.11 TCGA-FY-A3NP-01 12 113403801 113403801 G A OAS3 Missense_Mutation p.D886N 0.42 tolerated(0.13) benign(0.133) TCGA-FY-A3NP-01 12 94641772 94641772 G A PLXNC1 Missense_Mutation p.V828I 0.07 deleterious(0.01) probably_damaging(0.999) TCGA-FY-A3NP-01 14 81371163 81371163 C A CEP128 Missense_Mutation p.M158I 0.05 tolerated(0.44) benign(0.012) TCGA-FY-A3NP-01 16 67762359 67762359 T A RANBP10 Missense_Mutation p.M470L 0.31 tolerated(0.71) benign(0.013) TCGA-FY-A3NP-01 17 8076893 8076893 T C TMEM107 3'Flank 0.16 TCGA-FY-A3NP-01 19 14267930 14267930 G A LPHN1 Silent p.L930L 0.07 TCGA-FY-A3NP-01 19 44635831 44635831 A G ZNF225 Missense_Mutation p.Y355C 0.37 tolerated(0.18) benign(0.004) TCGA-FY-A3NP-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.35 tolerated(0.06) benign(0.006) TCGA-FY-A3NP-01 22 19183842 19183842 G A CLTCL1 Missense_Mutation p.L1376F 0.06 deleterious(0.01) possibly_damaging(0.493) TCGA-FY-A3NP-01 2 163302758 163302758 G A KCNH7 Nonsense_Mutation p.R442* 0.44 TCGA-FY-A3NP-01 4 111398204 111398204 G A ENPEP Missense_Mutation p.G212R 0.17 deleterious(0) probably_damaging(0.987) TCGA-FY-A3NP-01 4 1843468 1843468 C A LETM1 Missense_Mutation p.G67V 0.19 tolerated(0.11) benign(0.006) TCGA-FY-A3ON-01 10 104353429 104353429 C T SUFU Nonsense_Mutation p.Q212* 0.18 TCGA-FY-A3ON-01 19 7734285 7734285 G A RETN Missense_Mutation p.E25K 0.06 deleterious(0) benign(0.257) TCGA-FY-A3ON-01 20 29623222 29623222 G A FRG1B Missense_Mutation p.V12I 0.03 tolerated(0.18) benign(0.002) TCGA-FY-A3ON-01 2 25463196 25463197 TT - DNMT3A Frame_Shift_Del p.K766Efs*15 0.13 TCGA-FY-A3ON-01 5 71490028 71490028 G C MAP1B Missense_Mutation p.M282I 0.09 unknown(0) TCGA-FY-A3ON-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-FY-A3R6-01 11 109294541 109294541 C T C11orf87 Missense_Mutation p.T61M 0.16 deleterious(0) probably_damaging(0.998) TCGA-FY-A3R6-01 12 120741654 120741654 G A SIRT4 Missense_Mutation p.R97Q 0.06 tolerated(0.18) benign(0.025) TCGA-FY-A3R6-01 18 5395089 5395089 C T EPB41L3 Missense_Mutation p.D1044N 0.17 deleterious(0) probably_damaging(1) TCGA-FY-A3R6-01 21 46021268 46021268 T G KRTAP10-7 Silent p.S249S 0.18 TCGA-FY-A3R6-01 21 48069639 48069639 G A PRMT2 Silent p.G214G 0.07 TCGA-FY-A3R6-01 22 37888680 37888680 G A CARD10 Missense_Mutation p.S869F 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-FY-A3R6-01 3 52326848 52326848 G C GLYCTK Silent p.L426L 0.25 TCGA-FY-A3R6-01 4 1838262 1838262 G A LETM1 Missense_Mutation p.P211L 0.20 deleterious(0) probably_damaging(1) TCGA-FY-A3R6-01 5 150925516 150925516 C T FAT2 Silent p.S1724S 0.15 TCGA-FY-A3R6-01 5 64629869 64629869 C T ADAMTS6 Missense_Mutation p.G373S 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-FY-A3R6-01 X 77912899 77912899 G T ZCCHC5 Missense_Mutation p.A340E 0.13 deleterious(0.04) benign(0.134) TCGA-FY-A3R7-01 12 113447028 113447028 C A OAS2 Missense_Mutation p.P678T 0.03 tolerated(0.12) benign(0.01) TCGA-FY-A3R7-01 12 125459964 125459964 C T DHX37 Splice_Site p.X327_splice 0.05 TCGA-FY-A3R7-01 12 7984255 7984255 C T SLC2A14 Missense_Mutation p.V96I 0.05 tolerated(0.47) benign(0.203) TCGA-FY-A3R7-01 14 47426730 47426730 G C MDGA2 Missense_Mutation p.R646G 0.04 tolerated(0.06) benign(0.356) TCGA-FY-A3R7-01 16 85100875 85100875 G C KIAA0513 Missense_Mutation p.W66C 0.06 deleterious(0) probably_damaging(0.999) TCGA-FY-A3R7-01 2 138414527 138414527 C T THSD7B Missense_Mutation p.R1426C 0.09 deleterious(0) unknown(0) TCGA-FY-A3R7-01 6 2749626 2749626 G T MYLK4 5'UTR 0.07 TCGA-FY-A3R7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.14 deleterious(0) probably_damaging(0.967) TCGA-FY-A3R7-01 8 42259489 42259489 C T VDAC3 Silent p.F170F 0.06 TCGA-FY-A3R7-01 X 149631107 149631107 C T MAMLD1 Intron 0.12 TCGA-FY-A3R7-01 X 9841718 9841718 G A SHROOM2 Silent p.A64A 0.04 TCGA-FY-A3R8-01 10 115595057 115595057 C T DCLRE1A Missense_Mutation p.E993K 0.14 deleterious(0) probably_damaging(1) TCGA-FY-A3R8-01 10 48371510 48371510 C G ZNF488 Missense_Mutation p.F326L 0.17 deleterious(0) probably_damaging(0.983) TCGA-FY-A3R8-01 10 98416610 98416610 G A PIK3AP1 Missense_Mutation p.T171M 0.06 tolerated(0.12) benign(0.003) TCGA-FY-A3R8-01 11 132812836 132812836 T C OPCML Missense_Mutation p.E51G 0.06 tolerated(0.09) possibly_damaging(0.507) TCGA-FY-A3R8-01 11 27390293 27390293 G A LGR4 Silent p.L659L 0.16 TCGA-FY-A3R8-01 1 152285714 152285714 T C FLG Missense_Mutation p.T550A 0.15 benign(0.35) TCGA-FY-A3R8-01 1 156215632 156215632 G T PAQR6 Missense_Mutation p.P3H 0.30 deleterious_low_confidence(0.03) probably_damaging(0.936) TCGA-FY-A3R8-01 1 9117665 9117665 G C SLC2A5 Silent p.L45L 0.47 TCGA-FY-A3R8-01 21 11014968 11014970 TCT - TPTE RNA 0.18 TCGA-FY-A3R8-01 21 31654786 31654786 A G KRTAP24-1 Silent p.L155L 0.06 TCGA-FY-A3R8-01 3 133894572 133894572 G C RYK Missense_Mutation p.L487V 0.14 deleterious(0) probably_damaging(0.983) TCGA-FY-A3R8-01 3 5025415 5025415 C T BHLHE40 3'UTR 0.07 TCGA-FY-A3R8-01 4 47644047 47644047 C A CORIN Silent p.V696V 0.23 TCGA-FY-A3R8-01 5 5239340 5239340 C A ADAMTS16 Missense_Mutation p.A744D 0.23 tolerated(0.22) benign(0.001) TCGA-FY-A3R8-01 6 107854783 107854784 - CTGCCGA SOBP Frame_Shift_Ins p.R184Lfs*10 0.16 TCGA-FY-A3R8-01 6 30899886 30899886 G T SFTA2 5'UTR 0.23 TCGA-FY-A3R8-01 6 84799015 84799015 C T MRAP2 Nonsense_Mutation p.Q145* 0.48 TCGA-FY-A3R8-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-FY-A3R8-01 8 139662001 139662001 A G COL22A1 Silent p.P1118P 0.13 TCGA-FY-A3R8-01 X 54492189 54492189 C A FGD1 Missense_Mutation p.E479D 0.35 tolerated(0.23) probably_damaging(0.982) TCGA-FY-A3R9-01 11 117058406 117058406 G A SIDT2 Missense_Mutation p.G384S 0.16 tolerated(0.56) benign(0.006) TCGA-FY-A3R9-01 12 108128006 108128006 G T PRDM4 Missense_Mutation p.S796Y 0.09 tolerated_low_confidence(0.05) benign(0.133) TCGA-FY-A3R9-01 12 49412616 49412616 C T PRKAG1 5'Flank 0.41 TCGA-FY-A3R9-01 12 54744398 54744398 G T COPZ1 3'UTR 0.28 TCGA-FY-A3R9-01 12 75902108 75902108 C A KRR1 Missense_Mutation p.R68S 0.18 deleterious(0) probably_damaging(0.988) TCGA-FY-A3R9-01 12 9322170 9322173 AGTT - PZP Frame_Shift_Del p.T619* 0.12 TCGA-FY-A3R9-01 13 75930351 75930351 G T TBC1D4 Silent p.R403R 0.09 TCGA-FY-A3R9-01 15 40509629 40509629 A T BUB1B Intron 0.16 TCGA-FY-A3R9-01 16 29096048 29096048 T G RRN3P2 RNA 0.19 TCGA-FY-A3R9-01 16 68264108 68264108 C T ESRP2 3'UTR 0.36 TCGA-FY-A3R9-01 17 40282394 40282394 T G RAB5C Missense_Mutation p.K76Q 0.19 deleterious(0.03) possibly_damaging(0.753) TCGA-FY-A3R9-01 17 42852801 42852801 G A ADAM11 Missense_Mutation p.A454T 0.15 tolerated(0.59) benign(0.065) TCGA-FY-A3R9-01 18 61309074 61309074 C T SERPINB4 Missense_Mutation p.E91K 0.25 tolerated(0.08) benign(0.172) TCGA-FY-A3R9-01 18 61326713 61326713 C T SERPINB3 Missense_Mutation p.E91K 0.09 tolerated(0.08) benign(0.172) TCGA-FY-A3R9-01 19 52023341 52023341 T A SIGLEC6 Nonsense_Mutation p.K453* 0.06 TCGA-FY-A3R9-01 1 103496733 103496733 C A COL11A1 Missense_Mutation p.S240I 0.15 probably_damaging(0.979) TCGA-FY-A3R9-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.38 deleterious(0.01) benign(0.045) TCGA-FY-A3R9-01 1 186114607 186114607 G A HMCN1 Missense_Mutation p.R4780Q 0.31 probably_damaging(0.979) TCGA-FY-A3R9-01 1 186359875 186359875 A G C1orf27 Silent p.Q169Q 0.45 TCGA-FY-A3R9-01 1 248309215 248309215 T A OR2M5 Missense_Mutation p.L256M 0.29 tolerated(1) benign(0.043) TCGA-FY-A3R9-01 20 17445952 17445952 C G PCSK2 Intron 0.19 TCGA-FY-A3R9-01 4 25125832 25125832 C A SEPSECS Silent p.G409G 0.12 TCGA-FY-A3R9-01 4 57215792 57215792 C G AASDH Missense_Mutation p.D709H 0.05 deleterious(0.04) possibly_damaging(0.625) TCGA-FY-A3R9-01 5 140553586 140553586 C T PCDHB7 Silent p.P390P 0.11 TCGA-FY-A3R9-01 6 30297528 30297528 A G TRIM39 Missense_Mutation p.D145G 0.09 deleterious(0.01) benign(0.103) TCGA-FY-A3R9-01 7 31377829 31377829 A T NEUROD6 3'UTR 0.14 TCGA-FY-A3R9-01 8 113267520 113267520 T A CSMD3 Silent p.A3333A 0.32 TCGA-FY-A3R9-01 X 135288575 135288575 G T FHL1 5'UTR 0.05 TCGA-FY-A3RA-01 12 123805029 123805029 T C SBNO1 Missense_Mutation p.T873A 0.04 deleterious(0.02) possibly_damaging(0.754) TCGA-FY-A3RA-01 14 23855756 23855756 C T MYH6 Missense_Mutation p.R1576Q 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-FY-A3RA-01 17 40705684 40705684 G A HSD17B1 Intron 0.50 TCGA-FY-A3RA-01 1 228113098 228113098 C T WNT9A Missense_Mutation p.R73H 0.12 deleterious(0) possibly_damaging(0.861) TCGA-FY-A3RA-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.45 deleterious(0) probably_damaging(0.967) TCGA-FY-A3RA-01 X 63445422 63445422 G A ASB12 Nonsense_Mutation p.Q37* 0.08 TCGA-FY-A3TY-01 13 58299387 58299387 C T PCDH17 Nonsense_Mutation p.Q1147* 0.11 TCGA-FY-A3TY-01 16 1828487 1828487 G A SPSB3 Silent p.L85L 0.11 TCGA-FY-A3TY-01 21 46935474 46935474 G A SLC19A1 3'UTR 0.16 TCGA-FY-A3TY-01 2 169791766 169791766 G A ABCB11 Missense_Mutation p.A995V 0.10 tolerated(0.1) probably_damaging(0.937) TCGA-FY-A3TY-01 3 33415072 33415072 A T FBXL2 Missense_Mutation p.E153V 0.07 deleterious(0.02) benign(0.06) TCGA-FY-A3TY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.14 deleterious(0) probably_damaging(0.967) TCGA-FY-A3TY-01 X 142967413 142967413 C T UBE2NL Missense_Mutation p.R71C 0.11 tolerated(0.13) benign(0.119) TCGA-FY-A3W9-01 11 15096620 15096620 A G CALCB Missense_Mutation p.S34G 0.44 tolerated(0.09) benign(0.014) TCGA-FY-A3W9-01 11 66995593 66995593 C - KDM2A Frame_Shift_Del p.H349Tfs*2 0.30 TCGA-FY-A3W9-01 13 23904954 23904954 T A SACS Missense_Mutation p.H4354L 0.87 probably_damaging(0.986) TCGA-FY-A3W9-01 17 74383472 74383472 A G SPHK1 Silent p.V406V 0.45 TCGA-FY-A3W9-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.45 tolerated(0.06) benign(0.006) TCGA-FY-A3W9-01 1 11718892 11718892 G A FBXO44 Silent p.A196A 0.55 TCGA-FY-A3W9-01 1 120286533 120286533 G T PHGDH Missense_Mutation p.R491L 0.08 deleterious(0.03) benign(0.01) TCGA-FY-A3W9-01 1 240071606 240071606 C A CHRM3 Silent p.G285G 0.41 TCGA-FY-A3W9-01 2 238280890 238280890 C T COL6A3 Missense_Mutation p.R1257K 0.08 benign(0.267) TCGA-FY-A3W9-01 2 98999896 98999896 G A CNGA3 Silent p.T147T 0.14 TCGA-FY-A3W9-01 5 154394056 154394056 C T KIF4B Missense_Mutation p.H213Y 0.54 deleterious(0) probably_damaging(0.995) TCGA-FY-A3W9-01 5 178579222 178579222 C T ADAMTS2 Missense_Mutation p.C517Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-FY-A3W9-01 5 5462371 5462371 C T KIAA0947 Missense_Mutation p.A975V 0.43 tolerated(0.3) benign(0.015) TCGA-FY-A3W9-01 5 55088550 55088550 A T DDX4 Nonsense_Mutation p.K462* 0.49 TCGA-FY-A3W9-01 6 135287541 135287541 T C HBS1L Missense_Mutation p.K657E 0.03 deleterious(0.02) possibly_damaging(0.755) TCGA-FY-A3W9-01 6 4069773 4069773 T C FAM217A Silent p.P228P 0.08 TCGA-FY-A3W9-01 6 49665595 49665595 A T CRISP2 Missense_Mutation p.Y165N 0.41 deleterious(0) probably_damaging(0.997) TCGA-FY-A3W9-01 6 84634311 84634311 G A CYB5R4 Missense_Mutation p.G272S 0.41 deleterious(0.03) benign(0.371) TCGA-FY-A3W9-01 8 27634109 27634109 A G ESCO2 Missense_Mutation p.N95S 0.11 tolerated(0.11) benign(0.117) TCGA-FY-A3W9-01 8 86178909 86178909 G A CA13 Missense_Mutation p.A143T 0.46 deleterious(0.01) possibly_damaging(0.656) TCGA-FY-A3WA-01 10 30915131 30915131 G A LYZL2 Silent p.D113D 0.32 TCGA-FY-A3WA-01 18 14543133 14543133 C A POTEC Missense_Mutation p.V5F 0.38 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-FY-A3WA-01 18 61309020 61309020 C T SERPINB4 Missense_Mutation p.G109R 0.37 deleterious(0.02) benign(0.405) TCGA-FY-A3WA-01 19 50170383 50170383 C G BCL2L12 Missense_Mutation p.S156C 0.06 deleterious(0.03) probably_damaging(0.946) TCGA-FY-A3WA-01 1 54371943 54371943 C A DIO1 Silent p.I219I 0.19 TCGA-FY-A3WA-01 1 92546095 92546095 A G BTBD8 5'UTR 0.25 TCGA-FY-A3WA-01 21 36088676 36088676 A G CLIC6 Missense_Mutation p.R653G 0.06 deleterious(0) probably_damaging(1) TCGA-FY-A3WA-01 4 7032081 7032081 C T TBC1D14 Missense_Mutation p.R682W 0.33 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-FY-A3WA-01 9 71629038 71629039 - GCGGCGGCG PRKACG 5'UTR 0.36 TCGA-FY-A3YR-01 11 125472219 125472219 C G STT3A Silent p.T57T 0.33 TCGA-FY-A3YR-01 11 6500429 6500429 G A ARFIP2 Missense_Mutation p.R86W 0.45 deleterious(0.01) probably_damaging(0.978) TCGA-FY-A3YR-01 11 68542856 68542856 A C CPT1A Missense_Mutation p.D501E 0.41 tolerated(0.3) benign(0.059) TCGA-FY-A3YR-01 12 72962380 72962380 T C TRHDE Missense_Mutation p.V647A 0.36 tolerated(0.51) benign(0.022) TCGA-FY-A3YR-01 15 22848844 22848844 T A TUBGCP5 Intron 0.05 TCGA-FY-A3YR-01 16 67862435 67862435 C A CENPT Missense_Mutation p.A502S 0.04 tolerated(0.12) benign(0.432) TCGA-FY-A3YR-01 17 4844199 4844199 G A RNF167 5'UTR 0.07 TCGA-FY-A3YR-01 18 61645663 61645663 A G SERPINB8 Missense_Mutation p.M41V 0.08 deleterious(0) probably_damaging(0.977) TCGA-FY-A3YR-01 1 152284626 152284626 A T FLG Silent p.R912R 0.03 TCGA-FY-A3YR-01 1 173934007 173934007 C T RC3H1 Missense_Mutation p.S529N 0.40 deleterious(0.04) probably_damaging(0.993) TCGA-FY-A3YR-01 1 224377965 224377965 G T DEGS1 Missense_Mutation p.G257C 0.08 deleterious(0) probably_damaging(1) TCGA-FY-A3YR-01 1 230492720 230492720 G C PGBD5 Missense_Mutation p.H158D 0.40 tolerated(0.86) benign(0.009) TCGA-FY-A3YR-01 1 24669233 24669233 A G GRHL3 Missense_Mutation p.K419R 0.29 tolerated(0.34) probably_damaging(0.982) TCGA-FY-A3YR-01 20 2473468 2473468 G A ZNF343 Missense_Mutation p.P61S 0.45 tolerated(0.11) benign(0.058) TCGA-FY-A3YR-01 22 26422689 26422689 T A MYO18B Missense_Mutation p.L2250H 0.44 deleterious(0) probably_damaging(0.992) TCGA-FY-A3YR-01 3 113804620 113804620 C T QTRTD1 Silent p.L385L 0.06 TCGA-FY-A3YR-01 3 130282174 130282174 G T COL6A6 Missense_Mutation p.K109N 0.36 tolerated(1) benign(0.003) TCGA-FY-A3YR-01 5 32074632 32074635 ACAG - PDZD2 Frame_Shift_Del p.T1142* 0.41 TCGA-FY-A3YR-01 5 35065551 35065551 G A PRLR Silent p.S503S 0.05 TCGA-FY-A3YR-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-FY-A40K-01 10 96535189 96535189 G A CYP2C19 Missense_Mutation p.R125H 0.34 tolerated(0.05) benign(0.229) TCGA-FY-A40K-01 18 67872889 67872889 G A RTTN Silent p.V2V 0.37 TCGA-FY-A40K-01 4 15841656 15841656 G T CD38 Missense_Mutation p.G223W 0.10 deleterious(0) probably_damaging(1) TCGA-FY-A40K-01 6 31595709 31595709 T G PRRC2A Missense_Mutation p.C486W 0.30 unknown(0) TCGA-FY-A40K-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-FY-A40K-01 7 4947083 4947083 C T MMD2 Missense_Mutation p.A253T 0.12 deleterious(0) probably_damaging(0.978) TCGA-FY-A40L-01 10 115485263 115485263 C G CASP7 Silent p.T206T 0.29 TCGA-FY-A40L-01 11 117261870 117261870 A G CEP164 Missense_Mutation p.N741S 0.34 tolerated(0.13) benign(0.045) TCGA-FY-A40L-01 11 128773264 128773264 C T C11orf45 Silent p.V93V 0.22 TCGA-FY-A40L-01 11 63679850 63679850 C T RCOR2 Missense_Mutation p.G395E 0.12 tolerated(0.13) possibly_damaging(0.703) TCGA-FY-A40L-01 11 64108629 64108629 T C CCDC88B Silent p.L123L 0.26 TCGA-FY-A40L-01 14 74429684 74429684 G A COQ6 Missense_Mutation p.M463I 0.37 tolerated(0.28) benign(0.001) TCGA-FY-A40L-01 16 68055898 68055898 A - DDX28 Frame_Shift_Del p.F403Sfs*8 0.33 TCGA-FY-A40L-01 18 14542734 14542734 C T POTEC Missense_Mutation p.E138K 0.31 tolerated(0.88) possibly_damaging(0.899) TCGA-FY-A40L-01 1 201184678 201184678 A G IGFN1 Missense_Mutation p.I3003V 0.43 possibly_damaging(0.626) TCGA-FY-A40L-01 1 55612684 55612684 G A USP24 Missense_Mutation p.T723I 0.10 tolerated(0.21) benign(0.014) TCGA-FY-A40L-01 2 27458192 27458192 C T CAD Missense_Mutation p.A1289V 0.38 deleterious(0) probably_damaging(0.989) TCGA-FY-A40L-01 3 128618263 128618263 A T ACAD9 Missense_Mutation p.N256I 0.45 deleterious(0.01) benign(0.323) TCGA-FY-A40L-01 4 154625331 154625331 T - TLR2 Frame_Shift_Del p.H426Ifs*13 0.40 TCGA-FY-A40L-01 5 31983721 31983721 G T PDZD2 Missense_Mutation p.G313C 0.30 deleterious(0.03) benign(0.235) TCGA-FY-A40L-01 5 57755770 57755770 G C PLK2 Missense_Mutation p.T6S 0.37 tolerated_low_confidence(0.26) benign(0.037) TCGA-FY-A40L-01 6 169642009 169642009 C T THBS2 Missense_Mutation p.G247S 0.10 tolerated_low_confidence(1) benign(0.001) TCGA-FY-A40L-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.25 deleterious(0) probably_damaging(0.967) TCGA-FY-A40L-01 7 63538597 63538597 C T ZNF727 Silent p.H390H 0.12 TCGA-FY-A40L-01 8 11995733 11995733 G C USP17L2 Silent p.G179G 0.22 TCGA-FY-A40L-01 9 117553051 117553051 T A TNFSF15 Missense_Mutation p.D146V 0.37 tolerated(0.18) probably_damaging(0.999) TCGA-FY-A40L-01 9 15047897 15047897 C T RP11-54D18.3 Intron 0.12 TCGA-FY-A40M-01 11 17542472 17542472 G A USH1C Silent p.L385L 0.43 TCGA-FY-A40M-01 19 11094890 11094890 C T SMARCA4 Silent p.G21G 0.25 TCGA-FY-A40M-01 1 186136027 186136027 G A HMCN1 Missense_Mutation p.R5176H 0.49 benign(0.002) TCGA-FY-A40M-01 1 24998681 24998681 A G SRRM1 Silent p.E873E 0.29 TCGA-FY-A40M-01 21 37758405 37758405 A - CHAF1B 5'UTR 0.43 TCGA-FY-A40M-01 2 215845310 215845310 C T ABCA12 Missense_Mutation p.R1546H 0.06 deleterious(0) probably_damaging(0.999) TCGA-FY-A40M-01 2 33585808 33585808 A T LTBP1 Missense_Mutation p.D1382V 0.46 deleterious(0) probably_damaging(0.969) TCGA-FY-A40M-01 3 183884441 183884441 G A DVL3 Missense_Mutation p.G343D 0.48 deleterious(0.03) possibly_damaging(0.893) TCGA-FY-A40M-01 3 21462850 21462850 T A ZNF385D Silent p.A348A 0.39 TCGA-FY-A40M-01 3 99514780 99514780 T A COL8A1 Missense_Mutation p.F679I 0.44 deleterious(0.04) possibly_damaging(0.518) TCGA-FY-A40M-01 4 156847181 156847181 C T CTSO 3'UTR 0.17 TCGA-FY-A40M-01 5 130495259 130495259 G C HINT1 Missense_Mutation p.L88V 0.38 tolerated(0.36) benign(0.003) TCGA-FY-A40M-01 5 14769190 14769190 G A ANKH Silent p.F69F 0.59 TCGA-FY-A40M-01 6 3285329 3285329 G A SLC22A23 Silent p.S521S 0.43 TCGA-FY-A40M-01 7 151711750 151711750 C A GALNTL5 Missense_Mutation p.L350I 0.53 tolerated(0.17) benign(0.172) TCGA-FY-A40M-01 9 140777199 140777199 G A CACNA1B Missense_Mutation p.D132N 0.18 deleterious(0.05) benign(0.1) TCGA-FY-A40M-01 X 142717102 142717102 C T SLITRK4 Missense_Mutation p.R608Q 0.10 tolerated(0.59) benign(0.062) TCGA-FY-A40N-01 15 42115806 42115806 C T MAPKBP1 Missense_Mutation p.R1260C 0.49 deleterious(0) possibly_damaging(0.677) TCGA-FY-A40N-01 7 148427107 148427107 C G CUL1 5'UTR 0.44 TCGA-FY-A40N-01 7 148427233 148427233 C T CUL1 Nonsense_Mutation p.Q7* 0.28 TCGA-FY-A40N-01 7 148427298 148427298 C G CUL1 Missense_Mutation p.I28M 0.30 deleterious(0.03) possibly_damaging(0.745) TCGA-FY-A4B3-01 11 93088558 93088558 G C CCDC67 Missense_Mutation p.E17D 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-FY-A4B3-01 12 112103497 112103497 G A BRAP Missense_Mutation p.T281M 0.05 deleterious(0.01) possibly_damaging(0.848) TCGA-FY-A4B3-01 16 2098652 2098652 G A TSC2 Silent p.K12K 0.06 TCGA-FY-A4B3-01 16 4935111 4935111 G A PPL Missense_Mutation p.P1182L 0.32 deleterious(0) probably_damaging(1) TCGA-FY-A4B3-01 19 50097869 50097869 A G PRR12 Missense_Mutation p.T120A 0.30 benign(0) TCGA-FY-A4B3-01 19 50827018 50827018 G C KCNC3 Missense_Mutation p.L398V 0.10 tolerated(0.07) probably_damaging(0.998) TCGA-FY-A4B3-01 2 234774852 234774852 G C MSL3P1 RNA 0.36 TCGA-FY-A4B3-01 5 31305327 31305327 C A CDH6 Missense_Mutation p.A349D 0.37 deleterious(0) possibly_damaging(0.72) TCGA-FY-A4B3-01 5 5237086 5237086 G A ADAMTS16 Silent p.Q676Q 0.18 TCGA-FY-A4B3-01 6 46826302 46826302 T C GPR116 Missense_Mutation p.Y1113C 0.07 deleterious(0) probably_damaging(1) TCGA-FY-A4B3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.21 deleterious(0) probably_damaging(0.967) TCGA-FY-A4B3-01 8 109215251 109215251 C T EIF3E Missense_Mutation p.M420I 0.39 tolerated(0.5) benign(0.015) TCGA-FY-A4B3-01 9 135763731 135763731 C T C9orf9 Silent p.Y134Y 0.26 TCGA-FY-A4B3-01 9 139581702 139581702 C A AGPAT2 Silent p.L36L 0.16 TCGA-FY-A4B4-01 11 59271735 59271735 A C OR4D11 Silent p.A229A 0.38 TCGA-FY-A4B4-01 11 639803 639803 G T DRD4 Missense_Mutation p.C185F 0.32 deleterious(0) unknown(0) TCGA-FY-A4B4-01 11 67017761 67017761 G A KDM2A Missense_Mutation p.D754N 0.37 deleterious(0.03) benign(0.059) TCGA-FY-A4B4-01 11 73806316 73806316 G A C2CD3 Silent p.H1039H 0.32 TCGA-FY-A4B4-01 13 42877273 42877273 G A AKAP11 Missense_Mutation p.S1464N 0.07 tolerated(0.8) benign(0.018) TCGA-FY-A4B4-01 14 105246551 105246551 C T AKT1 Missense_Mutation p.E17K 0.32 deleterious(0) probably_damaging(0.999) TCGA-FY-A4B4-01 14 24657601 24657601 C T IPO4 Missense_Mutation p.R62H 0.07 deleterious(0) probably_damaging(1) TCGA-FY-A4B4-01 15 43813749 43813749 C G MAP1A Silent p.P26P 0.39 TCGA-FY-A4B4-01 15 77906580 77906580 G C LINGO1 Missense_Mutation p.L557V 0.38 tolerated(0.12) benign(0.019) TCGA-FY-A4B4-01 16 628429 628429 C T PIGQ Silent p.P331P 0.07 TCGA-FY-A4B4-01 17 8707376 8707376 A T PIK3R6 Silent p.T696T 0.42 TCGA-FY-A4B4-01 19 6501536 6501536 G A TUBB4A Silent p.N52N 0.32 TCGA-FY-A4B4-01 1 114423645 114423645 A G BCL2L15 3'UTR 0.43 TCGA-FY-A4B4-01 5 74001087 74001087 T C HEXB Missense_Mutation p.I238T 0.50 deleterious(0) probably_damaging(1) TCGA-FY-A4B4-01 6 32135007 32135007 A G EGFL8 Missense_Mutation p.T192A 0.26 tolerated(0.33) benign(0.13) TCGA-FY-A4B4-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-FY-A76V-01 12 4766977 4766977 A T NDUFA9 Missense_Mutation p.N128Y 0.21 deleterious(0) probably_damaging(0.99) TCGA-FY-A76V-01 12 63976288 63976288 C A DPY19L2 Missense_Mutation p.L541F 0.23 tolerated(0.07) possibly_damaging(0.819) TCGA-FY-A76V-01 15 66729094 66729099 TGGAGA - MAP2K1 In_Frame_Del p.E102_I103del 0.37 TCGA-FY-A76V-01 17 35992180 35992180 G A DDX52 Missense_Mutation p.T189M 0.04 deleterious(0) probably_damaging(0.994) TCGA-FY-A76V-01 19 39008171 39008171 G C RYR1 Missense_Mutation p.E3286D 0.46 benign(0.022) TCGA-FY-A76V-01 1 142803342 142803342 T G RP11-423O2.5 RNA 0.27 TCGA-FY-A76V-01 1 16957475 16957475 G A CROCCP2 RNA 0.30 TCGA-FY-A76V-01 1 87031618 87031618 C T CLCA4 Missense_Mutation p.T290I 0.30 tolerated(0.09) benign(0.058) TCGA-FY-A76V-01 20 31622089 31622089 G A BPIFB6 Missense_Mutation p.G99S 0.05 deleterious(0.01) probably_damaging(1) TCGA-FY-A76V-01 2 135223748 135223748 T C TMEM163 Missense_Mutation p.I202V 0.07 tolerated(0.96) benign(0) TCGA-FY-A76V-01 3 32031910 32031910 A G ZNF860 Missense_Mutation p.T447A 0.15 deleterious(0) benign(0.011) TCGA-FY-A76V-01 7 123254610 123254610 G A ASB15 Silent p.Q18Q 0.04 TCGA-FY-A76V-01 7 90613533 90613533 G C CDK14 Missense_Mutation p.D322H 0.04 deleterious(0.01) possibly_damaging(0.78) TCGA-FY-A76V-01 9 130825860 130825860 G C NAIF1 Silent p.G277G 0.39 TCGA-FY-A76V-01 X 153186199 153186199 C T ARHGAP4 Missense_Mutation p.A188T 0.76 deleterious(0) benign(0.242) TCGA-FY-A76V-01 X 54497833 54497833 C A FGD1 Missense_Mutation p.R132L 0.10 tolerated_low_confidence(0.07) benign(0.003) TCGA-GE-A2C6-01 10 90699437 90699437 C A ACTA2 Missense_Mutation p.R212L 0.09 deleterious_low_confidence(0) possibly_damaging(0.896) TCGA-GE-A2C6-01 11 63487681 63487681 T C RTN3 Silent p.P569P 0.06 TCGA-GE-A2C6-01 5 176304656 176304656 C G UNC5A Missense_Mutation p.D529E 0.07 tolerated(1) benign(0.003) TCGA-GE-A2C6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.16 deleterious(0) probably_damaging(0.967) TCGA-H2-A26U-01 11 59863096 59863096 C - MS4A2 Frame_Shift_Del p.P235Qfs*19 0.16 TCGA-H2-A26U-01 19 46825036 46825036 C T HIF3A Missense_Mutation p.T383I 0.28 tolerated(0.39) benign(0.017) TCGA-H2-A26U-01 1 153719545 153719545 A G INTS3 Missense_Mutation p.Q144R 0.05 deleterious(0) probably_damaging(0.986) TCGA-H2-A26U-01 2 65301473 65301476 ACTG - CEP68 Frame_Shift_Del p.D649Tfs*26 0.20 TCGA-H2-A26U-01 6 112469364 112469364 T A LAMA4 Missense_Mutation p.D783V 0.27 deleterious(0.01) possibly_damaging(0.772) TCGA-H2-A26U-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.16 deleterious(0) probably_damaging(0.967) TCGA-H2-A2K9-01 11 65780827 65780827 C T CST6 Nonsense_Mutation p.Q136* 0.10 TCGA-H2-A2K9-01 14 106235608 106235608 G A IGHG3 Missense_Mutation p.T367M 0.26 deleterious(0.02) benign(0.398) TCGA-H2-A2K9-01 15 51837864 51837864 C A DMXL2 Missense_Mutation p.Q282H 0.57 tolerated(0.49) probably_damaging(0.94) TCGA-H2-A2K9-01 17 48596401 48596401 A T MYCBPAP Missense_Mutation p.E283V 0.39 deleterious(0) probably_damaging(0.999) TCGA-H2-A2K9-01 18 2960777 2960777 C T LPIN2 Missense_Mutation p.G21D 0.10 deleterious(0) probably_damaging(1) TCGA-H2-A2K9-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.42 tolerated(0.06) benign(0.006) TCGA-H2-A2K9-01 22 46653016 46653016 A C PKDREJ Nonsense_Mutation p.Y2068* 0.43 TCGA-H2-A2K9-01 2 157182823 157182823 C T NR4A2 Missense_Mutation p.G460D 0.49 tolerated(1) benign(0.013) TCGA-H2-A2K9-01 5 141041612 141041612 G - ARAP3 Frame_Shift_Del p.A1004Vfs*16 0.38 TCGA-H2-A2K9-01 8 57353902 57353902 C T PENK Missense_Mutation p.E245K 0.21 deleterious(0.03) benign(0.201) TCGA-H2-A2K9-01 8 95683762 95683762 C T ESRP1 Missense_Mutation p.P439S 0.07 deleterious(0.02) benign(0.01) TCGA-H2-A2K9-01 9 90296352 90296352 C T DAPK1 Nonsense_Mutation p.R679* 0.43 TCGA-H2-A3RH-01 10 79595529 79595529 C A DLG5 Missense_Mutation p.R530L 0.47 deleterious(0) probably_damaging(0.994) TCGA-H2-A3RH-01 11 108535847 108535847 G C DDX10 5'UTR 0.39 TCGA-H2-A3RH-01 11 128680730 128680730 T C FLI1 Silent p.P402P 0.04 TCGA-H2-A3RH-01 12 25380277 25380277 G T KRAS Missense_Mutation p.Q61K 0.34 deleterious(0.01) benign(0.279) TCGA-H2-A3RH-01 12 25380278 25380278 A T KRAS Silent p.G60G 0.35 TCGA-H2-A3RH-01 13 23913335 23913340 AAATCC - SACS In_Frame_Del p.G1559_F1560del 0.07 TCGA-H2-A3RH-01 13 51915403 51915403 T C SERPINE3 Missense_Mutation p.L59P 0.05 deleterious(0.01) probably_damaging(0.968) TCGA-H2-A3RH-01 17 40762598 40762598 G C TUBG1 Missense_Mutation p.G107A 0.08 deleterious(0) benign(0.377) TCGA-H2-A3RH-01 17 40762599 40762599 A G TUBG1 Silent p.G107G 0.08 TCGA-H2-A3RH-01 17 45904011 45904011 G A MRPL10 Missense_Mutation p.P185L 0.05 tolerated(0.57) benign(0.004) TCGA-H2-A3RH-01 19 10747368 10747368 G A SLC44A2 Silent p.A509A 0.07 TCGA-H2-A3RH-01 21 46306198 46306198 C A ITGB2 3'UTR 0.12 TCGA-H2-A3RH-01 2 217332707 217332707 T C SMARCAL1 Missense_Mutation p.F728L 0.03 tolerated(0.08) probably_damaging(0.956) TCGA-H2-A3RH-01 6 34003992 34003992 C T GRM4 Missense_Mutation p.G632D 0.06 deleterious(0) probably_damaging(1) TCGA-H2-A3RH-01 6 64394725 64394725 G A PHF3 Missense_Mutation p.D368N 0.32 tolerated_low_confidence(0.2) benign(0.004) TCGA-H2-A3RH-01 6 74228155 74228158 GACA - EEF1A1 Frame_Shift_Del p.V317Rfs*27 0.21 TCGA-H2-A3RH-01 7 128359074 128359074 T A FAM71F1 Silent p.P208P 0.45 TCGA-H2-A3RH-01 7 2613074 2613074 C A IQCE Silent p.V139V 0.05 TCGA-H2-A3RH-01 9 116858707 116858707 C T KIF12 Missense_Mutation p.R95Q 0.12 deleterious(0) probably_damaging(1) TCGA-H2-A3RI-01 17 11872791 11872791 G A DNAH9 Missense_Mutation p.E4470K 0.08 benign(0.206) TCGA-H2-A3RI-01 2 201485429 201485429 G C AOX1 Silent p.L587L 0.04 TCGA-H2-A3RI-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-H2-A3RI-01 9 20982426 20982426 G A FOCAD Missense_Mutation p.R1570Q 0.04 tolerated(0.09) benign(0.038) TCGA-H2-A421-01 10 120797843 120797843 T A EIF3A Missense_Mutation p.D1212V 0.04 deleterious_low_confidence(0.04) unknown(0) TCGA-H2-A421-01 10 55587219 55587219 G A PCDH15 Missense_Mutation p.A1434V 0.12 tolerated_low_confidence(0.12) benign(0.222) TCGA-H2-A421-01 11 4148017 4148017 G A RRM1 Missense_Mutation p.R475Q 0.07 deleterious_low_confidence(0.01) benign(0.05) TCGA-H2-A421-01 11 67219491 67219491 G A GPR152 Silent p.F235F 0.09 TCGA-H2-A421-01 12 21970200 21970200 G A ABCC9 Silent p.D1271D 0.08 TCGA-H2-A421-01 12 7188364 7188364 C A C1R Missense_Mutation p.M478I 0.08 tolerated(0.39) benign(0.004) TCGA-H2-A421-01 13 113803380 113803380 C T F10 Missense_Mutation p.A339V 0.28 tolerated(1) probably_damaging(0.956) TCGA-H2-A421-01 16 11217709 11217709 C T CLEC16A Silent p.F793F 0.10 TCGA-H2-A421-01 17 11872643 11872643 G A DNAH9 Silent p.L4420L 0.07 TCGA-H2-A421-01 17 18022676 18022676 C T MYO15A Missense_Mutation p.R188W 0.35 probably_damaging(0.992) TCGA-H2-A421-01 17 37618323 37618323 G A CDK12 5'UTR 0.33 TCGA-H2-A421-01 17 74084631 74084631 T C EXOC7 Missense_Mutation p.S456G 0.12 tolerated(0.49) benign(0.011) TCGA-H2-A421-01 18 21501533 21501533 A G LAMA3 Missense_Mutation p.I2721V 0.06 benign(0.309) TCGA-H2-A421-01 19 40722102 40722102 C T TTC9B Missense_Mutation p.A230T 0.06 tolerated_low_confidence(0.09) benign(0.023) TCGA-H2-A421-01 1 237993860 237993860 G A RYR2 Missense_Mutation p.D4896N 0.09 possibly_damaging(0.665) TCGA-H2-A421-01 20 42331451 42331451 G A MYBL2 Missense_Mutation p.E425K 0.11 deleterious(0.01) probably_damaging(0.916) TCGA-H2-A421-01 20 44539816 44539816 C A PLTP Missense_Mutation p.G59C 0.09 deleterious(0) probably_damaging(0.999) TCGA-H2-A421-01 21 46032866 46032866 T C KRTAP10-8 3'UTR 0.38 TCGA-H2-A421-01 2 160798656 160798656 C T PLA2R1 Missense_Mutation p.E1387K 0.10 tolerated(0.75) benign(0) TCGA-H2-A421-01 2 69002199 69002199 A G ARHGAP25 Intron 0.30 TCGA-H2-A421-01 3 148889914 148889914 C T HPS3 Silent p.L974L 0.27 TCGA-H2-A421-01 3 66434551 66434551 C T LRIG1 Silent p.E645E 0.06 TCGA-H2-A421-01 4 6642462 6642462 G A MRFAP1 Intron 0.10 TCGA-H2-A421-01 5 147863844 147863844 G T HTR4 Missense_Mutation p.T392N 0.22 tolerated_low_confidence(0.11) benign(0.013) TCGA-H2-A421-01 5 180048157 180048157 C T FLT4 Missense_Mutation p.A706T 0.08 tolerated(0.69) benign(0.01) TCGA-H2-A421-01 5 79354580 79354580 C T THBS4 Silent p.L233L 0.09 TCGA-H2-A421-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.32 deleterious(0) probably_damaging(0.967) TCGA-H2-A421-01 8 59511805 59511805 A C NSMAF Missense_Mutation p.V555G 0.11 deleterious(0.01) possibly_damaging(0.697) TCGA-H2-A421-01 9 5339569 5339569 C T RLN1 Missense_Mutation p.E60K 0.06 tolerated(0.55) benign(0.14) TCGA-H2-A421-01 X 140996442 140996442 A G MAGEC1 Silent p.V1084V 0.29 TCGA-H2-A421-01 X 92928382 92928382 C T NAP1L3 5'UTR 0.07 TCGA-H2-A422-01 11 66032653 66032653 C G KLC2 Missense_Mutation p.D427E 0.05 tolerated(0.39) benign(0.005) TCGA-H2-A422-01 11 71847120 71847120 A G FOLR3 Missense_Mutation p.K41R 0.37 deleterious(0.04) benign(0.024) TCGA-H2-A422-01 12 101560430 101560430 A - SLC5A8 Frame_Shift_Del p.G457Efs*33 0.25 TCGA-H2-A422-01 12 2613619 2613619 C T CACNA1C Intron 0.38 TCGA-H2-A422-01 16 21262201 21262201 C T ANKS4B 3'UTR 0.08 TCGA-H2-A422-01 16 3526257 3526257 C T NAA60 Silent p.L10L 0.40 TCGA-H2-A422-01 16 84691221 84691221 G A KLHL36 Missense_Mutation p.A270T 0.27 deleterious(0.04) possibly_damaging(0.571) TCGA-H2-A422-01 18 13056437 13056437 G C CEP192 Missense_Mutation p.G1283A 0.26 tolerated(0.4) benign(0.201) TCGA-H2-A422-01 19 964263 964263 G A ARID3A Missense_Mutation p.R261H 0.05 deleterious(0) probably_damaging(0.999) TCGA-H2-A422-01 22 18021606 18021606 G T CECR2 Nonsense_Mutation p.E634* 0.14 TCGA-H2-A422-01 2 40657388 40657388 G A SLC8A1 Silent p.P11P 0.35 TCGA-H2-A422-01 3 48266103 48266103 G A CAMP Missense_Mutation p.R110Q 0.24 tolerated(1) benign(0.017) TCGA-H2-A422-01 4 139100480 139100480 C T SLC7A11 Silent p.S445S 0.05 TCGA-H2-A422-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-H2-A422-01 7 143053998 143053998 G A FAM131B Missense_Mutation p.P243L 0.51 deleterious(0.04) probably_damaging(1) TCGA-H2-A422-01 8 57079869 57079869 T C PLAG1 Missense_Mutation p.T146A 0.47 tolerated(0.17) possibly_damaging(0.899) TCGA-H2-A422-01 X 153214697 153214697 T G HCFC1 3'UTR 0.35 TCGA-IM-A3EB-01 12 51467752 51467752 C G CSRNP2 Missense_Mutation p.G89R 0.07 deleterious(0) probably_damaging(1) TCGA-IM-A3EB-01 14 21109731 21109731 A T OR6S1 Missense_Mutation p.N40K 0.14 deleterious(0) benign(0) TCGA-IM-A3EB-01 17 29701105 29701105 G A NF1 Missense_Mutation p.A2818T 0.05 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-IM-A3EB-01 21 15893509 15893509 G A SAMSN1 Missense_Mutation p.R99W 0.16 deleterious(0) benign(0.249) TCGA-IM-A3EB-01 2 160869870 160869870 C A PLA2R1 Missense_Mutation p.G523V 0.26 deleterious(0) probably_damaging(0.946) TCGA-IM-A3EB-01 2 179529585 179529585 C A TTN Missense_Mutation p.V12038F 0.26 TCGA-IM-A3EB-01 6 114379018 114379018 A G HS3ST5 Silent p.P148P 0.32 TCGA-IM-A3EB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-IM-A3ED-01 10 61835632 61835632 C T ANK3 Silent p.P1669P 0.26 TCGA-IM-A3ED-01 12 117402520 117402520 G A FBXW8 Silent p.V232V 0.29 TCGA-IM-A3ED-01 19 15289709 15289709 T A NOTCH3 Silent p.P1254P 0.29 TCGA-IM-A3ED-01 5 23527796 23527796 C T PRDM9 Missense_Mutation p.R867W 0.27 deleterious(0.03) probably_damaging(0.958) TCGA-IM-A3ED-01 6 45917096 45917096 G C CLIC5 Missense_Mutation p.L225V 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-IM-A3ED-01 6 80228599 80228599 C T LCA5 Missense_Mutation p.A5T 0.26 tolerated(0.31) benign(0.017) TCGA-IM-A3ED-01 6 97561919 97561919 G A KLHL32 Silent p.G296G 0.28 TCGA-IM-A3ED-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-IM-A3ED-01 7 142565403 142565403 G C EPHB6 Silent p.V596V 0.46 TCGA-IM-A3ED-01 7 1518144 1518144 T C INTS1 Splice_Site p.X1497_splice 0.17 TCGA-IM-A3ED-01 9 140953611 140953611 C T CACNA1B Silent p.C1518C 0.45 TCGA-IM-A3U2-01 11 40135883 40135883 T C LRRC4C 3'UTR 0.43 TCGA-IM-A3U2-01 11 62494174 62494174 C T HNRNPUL2 Missense_Mutation p.R152K 0.34 tolerated(0.92) benign(0) TCGA-IM-A3U2-01 11 67012703 67012703 C T KDM2A Missense_Mutation p.P536L 0.34 tolerated(0.07) probably_damaging(0.94) TCGA-IM-A3U2-01 11 67925361 67925361 A G SUV420H1 Missense_Mutation p.Y818H 0.37 tolerated(0.3) possibly_damaging(0.845) TCGA-IM-A3U2-01 11 68331877 68331877 G - PPP6R3 Frame_Shift_Del p.E318Nfs*11 0.19 TCGA-IM-A3U2-01 12 71978313 71978313 G A LGR5 Nonsense_Mutation p.W841* 0.32 TCGA-IM-A3U2-01 15 66782756 66782756 T C SNAPC5 3'Flank 0.37 TCGA-IM-A3U2-01 16 332688 332688 G A ARHGDIG Silent p.E184E 0.07 TCGA-IM-A3U2-01 16 613508 613508 C G C16orf11 Missense_Mutation p.P72A 0.30 deleterious(0.02) possibly_damaging(0.883) TCGA-IM-A3U2-01 17 1478776 1478776 A C SLC43A2 3'UTR 0.44 TCGA-IM-A3U2-01 17 19318855 19318855 A G RNF112 Missense_Mutation p.R459G 0.11 deleterious(0.01) possibly_damaging(0.864) TCGA-IM-A3U2-01 17 34870998 34870998 T A MYO19 Missense_Mutation p.N192I 0.22 deleterious(0) probably_damaging(1) TCGA-IM-A3U2-01 17 37901566 37901566 C T GRB7 Missense_Mutation p.S384F 0.18 tolerated(0.06) possibly_damaging(0.739) TCGA-IM-A3U2-01 19 2129435 2129435 T C AP3D1 Missense_Mutation p.N205S 0.18 deleterious(0.03) possibly_damaging(0.872) TCGA-IM-A3U2-01 19 31048120 31048120 G T ZNF536 3'UTR 0.05 TCGA-IM-A3U2-01 19 36045884 36045884 G A ATP4A Silent p.V807V 0.44 TCGA-IM-A3U2-01 19 43269731 43269731 C T PSG8 Translation_Start_Site p.M1? 0.31 deleterious(0) possibly_damaging(0.884) TCGA-IM-A3U2-01 19 50215184 50215184 G A CPT1C Missense_Mutation p.R662Q 0.19 tolerated(0.19) benign(0.003) TCGA-IM-A3U2-01 19 8146248 8146248 A G FBN3 Missense_Mutation p.C2444R 0.05 deleterious(0) probably_damaging(0.998) TCGA-IM-A3U2-01 19 8842269 8842269 G A OR2Z1 Silent p.R293R 0.04 TCGA-IM-A3U2-01 19 9065420 9065420 T G MUC16 Silent p.T7342T 0.37 TCGA-IM-A3U2-01 1 150936158 150936158 G A SETDB1 Missense_Mutation p.E1204K 0.46 deleterious(0) probably_damaging(0.986) TCGA-IM-A3U2-01 1 155307970 155307970 T C ASH1L Missense_Mutation p.T2905A 0.27 tolerated_low_confidence(1) benign(0) TCGA-IM-A3U2-01 1 236729279 236729279 G C HEATR1 Missense_Mutation p.Q1459E 0.36 deleterious(0) probably_damaging(0.998) TCGA-IM-A3U2-01 1 43830608 43830608 C G ELOVL1 Missense_Mutation p.E103D 0.29 tolerated(0.55) benign(0.253) TCGA-IM-A3U2-01 20 3675022 3675022 G A SIGLEC1 Silent p.P1034P 0.30 TCGA-IM-A3U2-01 20 44432018 44432018 G A DNTTIP1 Splice_Site p.X201_splice 0.24 TCGA-IM-A3U2-01 20 57428474 57428474 G A GNAS Missense_Mutation p.E52K 0.25 tolerated_low_confidence(0.05) unknown(0) TCGA-IM-A3U2-01 20 61947922 61947922 G A COL20A1 Missense_Mutation p.A848T 0.44 tolerated(0.06) benign(0.021) TCGA-IM-A3U2-01 21 32007755 32007755 G T KRTAP20-2 Missense_Mutation p.R58I 0.04 unknown(0) TCGA-IM-A3U2-01 21 44299625 44299625 C G WDR4 5'UTR 0.40 TCGA-IM-A3U2-01 21 45527262 45527262 G A PWP2 5'UTR 0.08 TCGA-IM-A3U2-01 22 32215193 32215193 A G DEPDC5 Missense_Mutation p.M618V 0.20 tolerated(0.1) benign(0.005) TCGA-IM-A3U2-01 22 42976253 42976253 A - POLDIP3 3'Flank 0.44 TCGA-IM-A3U2-01 22 50315381 50315381 C T CRELD2 Silent p.L188L 0.03 TCGA-IM-A3U2-01 2 25471030 25471043 GGGCTGGCCTCCTC - DNMT3A Frame_Shift_Del p.E240Sfs*8 0.19 TCGA-IM-A3U2-01 4 57889901 57889901 T G POLR2B Missense_Mutation p.I947S 0.37 deleterious(0) possibly_damaging(0.799) TCGA-IM-A3U2-01 4 8605771 8605771 T A CPZ Missense_Mutation p.S189T 0.06 tolerated(0.08) benign(0.117) TCGA-IM-A3U2-01 6 106547263 106547264 - T PRDM1 Frame_Shift_Ins p.P168Sfs*21 0.21 TCGA-IM-A3U2-01 6 159178397 159178397 A G SYTL3 Missense_Mutation p.H431R 0.17 deleterious(0) benign(0.084) TCGA-IM-A3U2-01 6 160679691 160679691 G A SLC22A2 Silent p.F33F 0.32 TCGA-IM-A3U2-01 6 38749066 38749066 C T DNAH8 Missense_Mutation p.R509C 0.31 probably_damaging(0.993) TCGA-IM-A3U2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-IM-A3U2-01 8 66525624 66525624 T C ARMC1 Missense_Mutation p.Y107C 0.40 deleterious(0.02) possibly_damaging(0.894) TCGA-IM-A3U2-01 9 115337082 115337082 A G KIAA1958 Missense_Mutation p.H241R 0.26 tolerated(0.84) benign(0.002) TCGA-IM-A3U2-01 9 16436640 16436640 C T BNC2 Missense_Mutation p.A518T 0.32 tolerated(0.14) possibly_damaging(0.557) TCGA-IM-A3U2-01 X 118771054 118771054 A C SEPT6 Missense_Mutation p.Y298D 0.25 deleterious(0) probably_damaging(0.987) TCGA-IM-A3U2-01 X 130416966 130416966 T A IGSF1 Missense_Mutation p.I314F 0.35 deleterious(0) possibly_damaging(0.791) TCGA-IM-A3U2-01 X 27839566 27839566 A G MAGEB10 Missense_Mutation p.D48G 0.35 tolerated(0.63) benign(0.039) TCGA-IM-A3U2-01 X 55650393 55650393 C T FOXR2 Silent p.D83D 0.39 TCGA-IM-A3U2-01 X 69424816 69424816 C A DGAT2L6 Missense_Mutation p.P292T 0.24 tolerated(0.36) probably_damaging(1) TCGA-IM-A3U3-01 12 78400935 78400935 A C NAV3 Missense_Mutation p.Q539H 0.11 deleterious(0.01) probably_damaging(0.916) TCGA-IM-A3U3-01 13 49925022 49925022 C T CAB39L Missense_Mutation p.R141H 0.10 tolerated(0.21) benign(0.005) TCGA-IM-A3U3-01 1 114499825 114499825 C T HIPK1 Missense_Mutation p.P558S 0.06 tolerated(0.4) benign(0.186) TCGA-IM-A3U3-01 1 12387912 12387912 G A VPS13D Splice_Site p.X2733_splice 0.07 TCGA-IM-A3U3-01 1 33583639 33583639 C T ADC Missense_Mutation p.A389V 0.19 deleterious(0) probably_damaging(0.962) TCGA-IM-A3U3-01 1 44684778 44684780 GAA - DMAP1 In_Frame_Del p.K259del 0.10 TCGA-IM-A3U3-01 1 47110844 47110844 T C ATPAF1 Missense_Mutation p.I248V 0.27 deleterious(0.01) possibly_damaging(0.542) TCGA-IM-A3U3-01 20 47611096 47611096 C T ARFGEF2 Missense_Mutation p.H1028Y 0.11 tolerated(1) benign(0) TCGA-IM-A3U3-01 2 169781177 169781177 T C ABCB11 Missense_Mutation p.E1252G 0.07 deleterious(0) probably_damaging(0.961) TCGA-IM-A3U3-01 2 179598614 179598614 G T TTN Missense_Mutation p.P5168T 0.15 TCGA-IM-A3U3-01 2 62081111 62081111 G C FAM161A Missense_Mutation p.I22M 0.46 tolerated(0.23) possibly_damaging(0.532) TCGA-IM-A3U3-01 3 105464772 105464772 G T CBLB Silent p.T278T 0.06 TCGA-IM-A3U3-01 3 108405390 108405390 A G DZIP3 Silent p.R1036R 0.13 TCGA-IM-A3U3-01 3 125786908 125786908 G A SLC41A3 Missense_Mutation p.P52L 0.09 tolerated(0.13) benign(0.004) TCGA-IM-A3U3-01 3 56597934 56597934 A G CCDC66 Missense_Mutation p.K109E 0.14 deleterious(0.05) benign(0.117) TCGA-IM-A3U3-01 5 32126343 32126343 G A GOLPH3 Missense_Mutation p.A291V 0.05 deleterious(0) possibly_damaging(0.901) TCGA-IM-A3U3-01 6 31911265 31911265 C T CFB Missense_Mutation p.R357C 0.10 tolerated(0.06) benign(0.295) TCGA-IM-A3U3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-IM-A3U3-01 8 133740227 133740227 C T TMEM71 Missense_Mutation p.D146N 0.13 deleterious(0.03) possibly_damaging(0.697) TCGA-IM-A3U3-01 8 133935742 133935743 CA - TG Frame_Shift_Del p.Q1564Vfs*8 0.17 TCGA-IM-A3U3-01 9 127651460 127651460 G A GOLGA1 Missense_Mutation p.P575S 0.06 tolerated(0.41) benign(0.028) TCGA-IM-A3U3-01 X 106108793 106108793 G A TBC1D8B Missense_Mutation p.R786H 0.08 deleterious(0) probably_damaging(1) TCGA-IM-A3U3-01 X 152991293 152991293 G A ABCD1 Missense_Mutation p.R191H 0.12 tolerated(0.06) possibly_damaging(0.803) TCGA-IM-A3U3-01 X 153207421 153207421 C G RENBP Missense_Mutation p.G251R 0.22 deleterious(0) probably_damaging(0.999) TCGA-IM-A3U3-01 X 92928233 92928233 C T NAP1L3 Missense_Mutation p.S24N 0.26 tolerated_low_confidence(0.07) benign(0.092) TCGA-IM-A41Y-01 11 36511331 36511331 G T TRAF6 3'UTR 0.07 TCGA-IM-A41Y-01 11 56237236 56237236 G A OR5M3 Silent p.V246V 0.07 TCGA-IM-A41Y-01 12 110350871 110350871 G A TCHP Missense_Mutation p.M376I 0.05 deleterious(0) possibly_damaging(0.497) TCGA-IM-A41Y-01 12 113603644 113603644 C T DDX54 Silent p.E536E 0.30 TCGA-IM-A41Y-01 13 29600418 29600418 C T MTUS2 Missense_Mutation p.S538L 0.06 deleterious(0.02) benign(0.124) TCGA-IM-A41Y-01 15 42170795 42170796 - A SPTBN5 Frame_Shift_Ins p.P1072Lfs*29 0.09 TCGA-IM-A41Y-01 15 56993410 56993410 A G ZNF280D Missense_Mutation p.S68P 0.27 deleterious(0) possibly_damaging(0.903) TCGA-IM-A41Y-01 17 61907309 61907309 G C PSMC5 Missense_Mutation p.K88N 0.19 tolerated(0.17) probably_damaging(0.928) TCGA-IM-A41Y-01 18 70450954 70450954 C T NETO1 Missense_Mutation p.R276Q 0.04 tolerated(0.15) probably_damaging(0.946) TCGA-IM-A41Y-01 18 74667954 74667954 C G ZNF236 Missense_Mutation p.S1641C 0.29 deleterious(0.05) possibly_damaging(0.572) TCGA-IM-A41Y-01 19 3747863 3747863 C G TJP3 Missense_Mutation p.S807R 0.29 deleterious(0) probably_damaging(0.986) TCGA-IM-A41Y-01 19 40521788 40521788 C T ZNF546 3'UTR 0.21 TCGA-IM-A41Y-01 19 49005719 49005719 C T LMTK3 Silent p.A284A 0.06 TCGA-IM-A41Y-01 1 23695869 23695869 G A C1orf213 Missense_Mutation p.A27T 0.06 tolerated_low_confidence(0.22) benign(0.082) TCGA-IM-A41Y-01 1 26527933 26527933 G C CATSPER4 Missense_Mutation p.E430Q 0.07 tolerated(0.07) benign(0.104) TCGA-IM-A41Y-01 20 62199815 62199815 G C HELZ2 Missense_Mutation p.I542M 0.50 deleterious(0) probably_damaging(0.98) TCGA-IM-A41Y-01 20 62593668 62593668 C G ZNF512B Missense_Mutation p.K741N 0.03 deleterious(0) probably_damaging(0.987) TCGA-IM-A41Y-01 2 99697773 99697773 C G TSGA10 Missense_Mutation p.E233D 0.38 tolerated(0.11) possibly_damaging(0.623) TCGA-IM-A41Y-01 3 113673157 113673157 G C ZDHHC23 Missense_Mutation p.E258Q 0.21 tolerated(0.37) benign(0.149) TCGA-IM-A41Y-01 3 57542553 57542553 G C PDE12 Missense_Mutation p.Q149H 0.07 tolerated(0.09) benign(0.035) TCGA-IM-A41Y-01 4 106156119 106156119 C G TET2 Missense_Mutation p.I340M 0.06 tolerated(0.11) benign(0.014) TCGA-IM-A41Y-01 4 13601009 13601009 C T BOD1L1 Silent p.L2505L 0.07 TCGA-IM-A41Y-01 4 15559105 15559105 G A CC2D2A Missense_Mutation p.R935Q 0.41 deleterious(0.01) probably_damaging(0.976) TCGA-IM-A41Y-01 5 68417622 68417622 A G SLC30A5 Silent p.S557S 0.38 TCGA-IM-A41Y-01 5 911973 911973 G A TRIP13 Silent p.V294V 0.06 TCGA-IM-A41Y-01 6 31239819 31239819 G T HLA-C Silent p.L10L 0.33 TCGA-IM-A41Y-01 7 131172392 131172392 G A MKLN1 Missense_Mutation p.A705T 0.15 tolerated(0.59) benign(0.001) TCGA-IM-A41Y-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.51 deleterious(0) probably_damaging(0.967) TCGA-IM-A41Y-01 8 30704985 30704985 C G TEX15 Missense_Mutation p.D517H 0.30 tolerated(0.06) possibly_damaging(0.723) TCGA-IM-A41Y-01 9 117803286 117803286 G C TNC Missense_Mutation p.L1776V 0.11 tolerated(0.32) benign(0.082) TCGA-IM-A41Y-01 9 129595683 129595683 G A ZBTB43 Missense_Mutation p.E299K 0.39 tolerated(0.79) benign(0.154) TCGA-IM-A41Y-01 9 131397371 131397371 C T WDR34 Silent p.K327K 0.28 TCGA-IM-A41Y-01 9 140446549 140446549 G T MRPL41 Missense_Mutation p.A6S 0.24 tolerated(0.65) benign(0.008) TCGA-IM-A41Y-01 9 140446550 140446550 C T MRPL41 Missense_Mutation p.A6V 0.23 tolerated(0.24) benign(0.081) TCGA-IM-A41Y-01 X 86924250 86924250 C T KLHL4 Intron 0.50 TCGA-IM-A41Y-01 X 89177590 89177590 G C TGIF2LX Missense_Mutation p.R169T 0.05 tolerated(0.34) benign(0.009) TCGA-IM-A420-01 14 39644521 39644521 A - PNN Frame_Shift_Del p.K14Rfs*24 0.10 TCGA-IM-A420-01 17 43481454 43481454 G C ARHGAP27 Silent p.T155T 0.33 TCGA-IM-A420-01 17 48599381 48599381 C T MYCBPAP Missense_Mutation p.P442L 0.24 deleterious(0) probably_damaging(1) TCGA-IM-A420-01 20 61490813 61490813 T C TCFL5 Silent p.A299A 0.26 TCGA-IM-A420-01 2 227661681 227661681 A C IRS1 Missense_Mutation p.L592V 0.26 tolerated(0.35) benign(0.014) TCGA-IM-A420-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-IM-A420-01 9 18474208 18474208 C T ADAMTSL1 5'UTR 0.31 TCGA-IM-A420-01 9 97220656 97220656 G A HIATL1 Silent p.G393G 0.07 TCGA-IM-A4EB-01 10 124914499 124914499 C T BUB3 Silent p.F22F 0.04 TCGA-IM-A4EB-01 10 75138726 75138726 C A ANXA7 Missense_Mutation p.M429I 0.39 deleterious(0.02) probably_damaging(0.964) TCGA-IM-A4EB-01 12 70188996 70188996 G T RAB3IP Nonsense_Mutation p.E270* 0.19 TCGA-IM-A4EB-01 13 42772705 42772705 G A DGKH Silent p.P753P 0.11 TCGA-IM-A4EB-01 14 105173320 105173320 G A INF2 Missense_Mutation p.R306H 0.36 tolerated(0.23) benign(0.084) TCGA-IM-A4EB-01 17 33953801 33953801 C T AP2B1 Missense_Mutation p.S293F 0.05 deleterious(0) possibly_damaging(0.806) TCGA-IM-A4EB-01 17 7129573 7129573 C T DVL2 Missense_Mutation p.E608K 0.30 tolerated(0.76) possibly_damaging(0.635) TCGA-IM-A4EB-01 19 49994080 49994080 C T RPL13A Missense_Mutation p.R101C 0.12 deleterious(0.01) benign(0.075) TCGA-IM-A4EB-01 21 46310012 46310012 A G ITGB2 Missense_Mutation p.V513A 0.26 deleterious(0.03) benign(0.209) TCGA-IM-A4EB-01 5 178555048 178555048 G A ADAMTS2 Silent p.V843V 0.11 TCGA-IM-A4EB-01 6 130505712 130505712 T A SAMD3 Missense_Mutation p.Y147F 0.35 tolerated(0.26) probably_damaging(0.999) TCGA-IM-A4EB-01 6 393325 393325 G A IRF4 Missense_Mutation p.G58D 0.18 deleterious(0) probably_damaging(1) TCGA-IM-A4EB-01 7 121011438 121011440 GCT CC FAM3C Frame_Shift_Del p.A63Vfs*30 0.14 TCGA-IM-A4EB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.29 deleterious(0) probably_damaging(0.967) TCGA-IM-A4EB-01 9 35737239 35737239 T C GBA2 Missense_Mutation p.K904R 0.27 tolerated_low_confidence(0.46) benign(0.001) TCGA-IM-A4EB-01 X 46309870 46309870 C T KRBOX4 5'UTR 0.16 TCGA-J8-A3NZ-01 15 25463651 25463651 T A SNORD115-27 5'Flank 0.08 TCGA-J8-A3NZ-01 15 75134762 75134762 C G ULK3 Splice_Site p.X35_splice 0.28 TCGA-J8-A3NZ-01 19 10431412 10431412 G A RAVER1 Silent p.S580S 0.12 TCGA-J8-A3NZ-01 19 45317503 45317503 G A BCAM Silent p.G293G 0.49 TCGA-J8-A3NZ-01 1 145328378 145328378 T C NBPF10 Missense_Mutation p.I1409T 0.04 benign(0.013) TCGA-J8-A3NZ-01 1 35260771 35260771 C G GJA4 Silent p.P319P 0.19 TCGA-J8-A3NZ-01 3 119462867 119462867 C T MAATS1 Silent p.L576L 0.46 TCGA-J8-A3NZ-01 3 197238954 197238954 C T BDH1 Missense_Mutation p.A282T 0.40 tolerated(0.2) benign(0.019) TCGA-J8-A3NZ-01 6 111697456 111697456 G C REV3L Missense_Mutation p.T701R 0.11 tolerated_low_confidence(0.19) benign(0.094) TCGA-J8-A3NZ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-J8-A3NZ-01 X 110654079 110654079 A C DCX Missense_Mutation p.S42A 0.04 deleterious_low_confidence(0) unknown(0) TCGA-J8-A3NZ-01 X 152087589 152087589 A T ZNF185 Missense_Mutation p.E165V 0.05 tolerated(0.21) probably_damaging(0.922) TCGA-J8-A3O0-01 11 113661643 113661643 C T ATF4P4 RNA 0.18 TCGA-J8-A3O0-01 11 18111042 18111042 T G SAAL1 Missense_Mutation p.K202T 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-J8-A3O0-01 11 65319868 65319868 G A LTBP3 Missense_Mutation p.P399L 0.40 deleterious(0.01) possibly_damaging(0.59) TCGA-J8-A3O0-01 15 72640388 72640388 C T HEXA Splice_Site p.X358_splice 0.25 TCGA-J8-A3O0-01 16 58549787 58549787 G A SETD6 Silent p.V40V 0.20 TCGA-J8-A3O0-01 17 72745249 72745249 G A SLC9A3R1 Silent p.L88L 0.29 TCGA-J8-A3O0-01 19 40947564 40947564 A C SERTAD3 Missense_Mutation p.L142V 0.39 deleterious(0.01) probably_damaging(0.967) TCGA-J8-A3O0-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.44 tolerated(0.06) benign(0.006) TCGA-J8-A3O0-01 1 6696245 6696245 T C DNAJC11 Missense_Mutation p.Y529C 0.27 deleterious(0) probably_damaging(1) TCGA-J8-A3O0-01 2 216285470 216285470 C G FN1 Missense_Mutation p.R534P 0.33 deleterious(0) probably_damaging(1) TCGA-J8-A3O0-01 3 10106101 10106101 T C FANCD2 Missense_Mutation p.V670A 0.28 tolerated(0.92) benign(0.002) TCGA-J8-A3O0-01 3 121410314 121410316 CTA - GOLGB1 Nonsense_Mutation p.L2632_G2633delins* 0.27 TCGA-J8-A3O0-01 4 81952594 81952594 G A BMP3 Silent p.P52P 0.07 TCGA-J8-A3O0-01 X 118724002 118724002 G A NKRF Silent p.N477N 0.08 TCGA-J8-A3O0-01 X 137715099 137715099 C A FGF13 Missense_Mutation p.R227L 0.08 tolerated_low_confidence(0.24) benign(0.024) TCGA-J8-A3O1-01 11 18427040 18427040 T C LDHA Missense_Mutation p.I281T 0.05 tolerated(0.07) probably_damaging(0.921) TCGA-J8-A3O1-01 12 14924033 14924033 G A HIST4H4 5'UTR 0.52 TCGA-J8-A3O1-01 12 58176601 58176601 C T TSFM Missense_Mutation p.S6L 0.28 deleterious_low_confidence(0.01) benign(0.176) TCGA-J8-A3O1-01 14 30105538 30105538 T C PRKD1 Missense_Mutation p.Q383R 0.46 tolerated(0.57) benign(0.001) TCGA-J8-A3O1-01 14 70237718 70237718 T G SRSF5 Silent p.V149V 0.21 TCGA-J8-A3O1-01 14 92088170 92088170 G A CATSPERB Missense_Mutation p.A681V 0.05 deleterious(0) probably_damaging(0.984) TCGA-J8-A3O1-01 15 102304695 102304695 G C DNM1P47 RNA 0.19 TCGA-J8-A3O1-01 15 72767235 72767235 C T ARIH1 Silent p.G85G 0.14 TCGA-J8-A3O1-01 17 10432293 10432293 C A MYH2 Missense_Mutation p.S1153I 0.47 deleterious(0) probably_damaging(0.958) TCGA-J8-A3O1-01 18 44627402 44627402 C T KATNAL2 3'UTR 0.35 TCGA-J8-A3O1-01 19 10204121 10204121 G A ANGPTL6 Missense_Mutation p.R376W 0.05 deleterious(0) probably_damaging(1) TCGA-J8-A3O1-01 19 5206842 5206842 C G PTPRS Missense_Mutation p.Q1930H 0.06 tolerated(0.08) probably_damaging(0.999) TCGA-J8-A3O1-01 1 203680123 203680123 A G ATP2B4 Missense_Mutation p.I640V 0.35 tolerated(0.44) benign(0.003) TCGA-J8-A3O1-01 2 113513632 113513632 G A CKAP2L Missense_Mutation p.T439I 0.46 tolerated(0.07) benign(0.103) TCGA-J8-A3O1-01 2 219886587 219886587 G A CCDC108 Silent p.V1015V 0.32 TCGA-J8-A3O1-01 3 105252457 105252457 G A ALCAM Missense_Mutation p.C157Y 0.46 deleterious(0) probably_damaging(0.989) TCGA-J8-A3O1-01 3 46484938 46484938 G A LTF Missense_Mutation p.A550V 0.41 deleterious(0) probably_damaging(0.994) TCGA-J8-A3O1-01 4 99993513 99993513 G A ADH5 3'UTR 0.20 TCGA-J8-A3O1-01 5 14297305 14297305 C T TRIO Missense_Mutation p.A434V 0.05 possibly_damaging(0.49) TCGA-J8-A3O1-01 7 108204990 108204990 G A THAP5 Missense_Mutation p.A278V 0.08 tolerated(0.14) benign(0.001) TCGA-J8-A3O1-01 7 56006963 56006963 G A ZNF713 Missense_Mutation p.R186K 0.29 tolerated(0.66) benign(0.192) TCGA-J8-A3O1-01 8 119209819 119209819 T C SAMD12 3'UTR 0.56 TCGA-J8-A3O2-01 10 88260115 88260115 C T WAPAL Silent p.T295T 0.14 TCGA-J8-A3O2-01 17 48221042 48221042 C T PPP1R9B Missense_Mutation p.G514R 0.20 deleterious(0) probably_damaging(0.99) TCGA-J8-A3O2-01 17 7193617 7193617 G A YBX2 Missense_Mutation p.R233W 0.23 deleterious(0) possibly_damaging(0.689) TCGA-J8-A3O2-01 18 34261476 34261476 G A FHOD3 Missense_Mutation p.R463Q 0.20 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-J8-A3O2-01 1 112020367 112020367 C G C1orf162 Silent p.A99A 0.14 TCGA-J8-A3O2-01 1 33292091 33292091 A T S100PBP Nonsense_Mutation p.K131* 0.22 TCGA-J8-A3O2-01 1 47904295 47904295 A G FOXD2 Missense_Mutation p.Y163C 0.28 deleterious(0) probably_damaging(0.998) TCGA-J8-A3O2-01 20 35444296 35444296 G A SOGA1 Nonsense_Mutation p.Q517* 0.28 TCGA-J8-A3O2-01 3 15686446 15686446 T C BTD Silent p.F361F 0.23 TCGA-J8-A3O2-01 4 83280727 83280727 T C HNRNPD Missense_Mutation p.K119R 0.18 tolerated(0.19) possibly_damaging(0.888) TCGA-J8-A3O2-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.20 deleterious(0) probably_damaging(0.967) TCGA-J8-A3O2-01 7 150878400 150878400 G A ASB10 Missense_Mutation p.R244C 0.06 deleterious(0) benign(0.271) TCGA-J8-A3O2-01 9 35748347 35748347 A C GBA2 Missense_Mutation p.L119V 0.25 tolerated(0.43) benign(0.003) TCGA-J8-A3YD-01 15 101872153 101872153 G A PCSK6 Missense_Mutation p.R647W 0.17 deleterious(0) probably_damaging(0.986) TCGA-J8-A3YD-01 15 74290656 74290656 C T PML Silent p.L147L 0.17 TCGA-J8-A3YD-01 1 236721596 236721596 C G HEATR1 Silent p.L1715L 0.07 TCGA-J8-A3YD-01 20 42747203 42747203 C G JPH2 Missense_Mutation p.Q410H 0.10 tolerated(0.15) benign(0.003) TCGA-J8-A3YD-01 2 74594021 74594021 C T DCTN1 Silent p.R785R 0.12 TCGA-J8-A3YD-01 3 128598462 128598462 C T ACAD9 5'UTR 0.12 TCGA-J8-A3YD-01 4 1388421 1388421 G C CRIPAK Missense_Mutation p.G41A 0.07 tolerated_low_confidence(0.91) probably_damaging(0.959) TCGA-J8-A3YD-01 5 134782873 134782873 C G TIFAB 3'UTR 0.31 TCGA-J8-A3YD-01 6 31079260 31079260 G T C6orf15 Silent p.I292I 0.11 TCGA-J8-A3YD-01 6 32170100 32170100 A G NOTCH4 Missense_Mutation p.C1170R 0.13 deleterious(0) probably_damaging(0.999) TCGA-J8-A3YD-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.17 deleterious(0) probably_damaging(0.967) TCGA-J8-A3YD-01 8 102381146 102381146 C T NACAP1 RNA 0.15 TCGA-J8-A3YD-01 8 125487437 125487437 C T RNF139 Silent p.P29P 0.10 TCGA-J8-A3YD-01 X 153670074 153670074 C G GDI1 Missense_Mutation p.I308M 0.11 deleterious(0) probably_damaging(0.99) TCGA-J8-A3YE-01 11 108196147 108196147 C T ATM Missense_Mutation p.T2228I 0.39 deleterious(0) benign(0.425) TCGA-J8-A3YE-01 11 66983353 66983353 G A KDM2A Missense_Mutation p.C207Y 0.04 deleterious(0) probably_damaging(1) TCGA-J8-A3YE-01 14 105211154 105211154 C - ADSSL1 Frame_Shift_Del p.L404* 0.32 TCGA-J8-A3YE-01 17 11772507 11772507 C A DNAH9 Missense_Mutation p.D3330E 0.05 benign(0.006) TCGA-J8-A3YE-01 1 10714637 10714637 G T CASZ1 Missense_Mutation p.N559K 0.06 deleterious(0.01) possibly_damaging(0.759) TCGA-J8-A3YE-01 1 158646045 158646045 G A SPTA1 Missense_Mutation p.S333F 0.40 deleterious(0.03) possibly_damaging(0.849) TCGA-J8-A3YE-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.39 deleterious(0) probably_damaging(0.967) TCGA-J8-A3YE-01 8 132999878 132999878 T C EFR3A Missense_Mutation p.I665T 0.45 deleterious(0) possibly_damaging(0.885) TCGA-J8-A3YE-01 9 5720735 5720735 T C KIAA1432 Silent p.S235S 0.41 TCGA-J8-A3YF-01 10 43015559 43015559 C T ZNF37BP RNA 0.25 TCGA-J8-A3YF-01 10 75874123 75874123 G T VCL Missense_Mutation p.R1044L 0.28 deleterious(0) probably_damaging(0.999) TCGA-J8-A3YF-01 11 5462660 5462660 C A OR51I1 Missense_Mutation p.V29F 0.22 tolerated(0.06) benign(0.282) TCGA-J8-A3YF-01 15 43820887 43820887 T C MAP1A Silent p.L2406L 0.30 TCGA-J8-A3YF-01 15 65257674 65257674 T C SPG21 Missense_Mutation p.N266S 0.23 deleterious(0.04) benign(0.14) TCGA-J8-A3YF-01 16 84797774 84797774 A G USP10 Silent p.E579E 0.30 TCGA-J8-A3YF-01 17 61885144 61885144 A G DDX42 Missense_Mutation p.K303E 0.32 deleterious(0) probably_damaging(0.999) TCGA-J8-A3YF-01 18 13734551 13734551 T A RNMT Missense_Mutation p.I169N 0.39 deleterious(0) probably_damaging(1) TCGA-J8-A3YF-01 19 18108996 18108996 G T KCNN1 Silent p.L471L 0.19 TCGA-J8-A3YF-01 19 42342217 42342217 G A LYPD4 Silent p.C110C 0.28 TCGA-J8-A3YF-01 19 49387078 49387078 C T TULP2 Missense_Mutation p.R403Q 0.38 deleterious(0.01) possibly_damaging(0.835) TCGA-J8-A3YF-01 19 686939 686939 G A PRSS57 Missense_Mutation p.R211W 0.09 deleterious(0) probably_damaging(0.971) TCGA-J8-A3YF-01 1 231401763 231401763 T G GNPAT Missense_Mutation p.L259R 0.33 deleterious(0) probably_damaging(0.998) TCGA-J8-A3YF-01 1 244217471 244217471 C T ZBTB18 Missense_Mutation p.T132M 0.20 deleterious(0.03) possibly_damaging(0.674) TCGA-J8-A3YF-01 1 28384518 28384518 A T EYA3 Nonsense_Mutation p.L7* 0.30 TCGA-J8-A3YF-01 20 49620640 49620640 C T KCNG1 Missense_Mutation p.S493N 0.35 tolerated(0.16) benign(0.042) TCGA-J8-A3YF-01 22 20760482 20760482 C T ZNF74 Missense_Mutation p.P387S 0.30 deleterious(0) probably_damaging(0.998) TCGA-J8-A3YF-01 22 46345891 46345891 G A WNT7B Silent p.G69G 0.23 TCGA-J8-A3YF-01 2 27167581 27167581 G A DPYSL5 Missense_Mutation p.V500M 0.31 tolerated(0.61) benign(0.004) TCGA-J8-A3YF-01 3 136667358 136667358 A G NCK1 3'UTR 0.26 TCGA-J8-A3YF-01 3 65350583 65350583 T C MAGI1 Missense_Mutation p.I1079V 0.36 tolerated(0.51) possibly_damaging(0.54) TCGA-J8-A3YF-01 4 119631352 119631352 T A METTL14 Silent p.S422S 0.27 TCGA-J8-A3YF-01 4 184596386 184596386 C A TRAPPC11 Missense_Mutation p.L244M 0.17 deleterious(0.03) possibly_damaging(0.665) TCGA-J8-A3YF-01 4 20715141 20715141 T A PACRGL Missense_Mutation p.H196Q 0.16 deleterious(0.01) benign(0.314) TCGA-J8-A3YF-01 4 57182015 57182015 G A KIAA1211 Missense_Mutation p.A783T 0.32 tolerated(0.79) possibly_damaging(0.695) TCGA-J8-A3YF-01 6 17539622 17539622 A T CAP2 Missense_Mutation p.K253N 0.28 tolerated(0.5) benign(0.008) TCGA-J8-A3YF-01 6 87925716 87925716 C G ZNF292 Silent p.A88A 0.34 TCGA-J8-A3YF-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.27 deleterious(0) probably_damaging(0.967) TCGA-J8-A3YF-01 8 30695301 30695301 A T TEX15 Missense_Mutation p.D2450E 0.21 tolerated(0.45) benign(0.011) TCGA-J8-A3YF-01 8 59347057 59347057 A G UBXN2B Missense_Mutation p.K176R 0.33 tolerated(0.54) probably_damaging(0.999) TCGA-J8-A3YG-01 17 1183415 1183415 C G TUSC5 Silent p.T40T 0.25 TCGA-J8-A3YG-01 19 11485510 11485510 G C SWSAP1 Missense_Mutation p.G31R 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-J8-A3YG-01 20 29976940 29976940 G A DEFB119 Missense_Mutation p.P52L 0.21 tolerated(0.97) probably_damaging(0.988) TCGA-J8-A3YG-01 22 46760065 46760065 C A CELSR1 Missense_Mutation p.A2955S 0.24 tolerated_low_confidence(0.92) benign(0.034) TCGA-J8-A3YG-01 3 129289655 129289655 C A PLXND1 Missense_Mutation p.A1242S 0.08 tolerated(0.89) benign(0.001) TCGA-J8-A3YG-01 3 45785079 45785079 T C SACM1L Missense_Mutation p.I561T 0.15 tolerated(0.31) benign(0.002) TCGA-J8-A3YG-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.26 deleterious(0) probably_damaging(0.967) TCGA-J8-A3YH-01 11 64781634 64781634 C T ARL2 5'UTR 0.36 TCGA-J8-A3YH-01 16 72831847 72831866 TTGAAGGGCTCTCTTTAACT - ZFHX3 Frame_Shift_Del p.K1572Rfs*19 0.15 TCGA-J8-A3YH-01 17 33738580 33738580 A T SLFN12 Missense_Mutation p.M505K 0.07 tolerated(1) benign(0) TCGA-J8-A3YH-01 19 39433360 39433360 C T CTC-360G5.8 Missense_Mutation p.G147D 0.05 tolerated(0.08) benign(0.005) TCGA-J8-A3YH-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-J8-A3YH-01 7 72658348 72658348 C T GTF2IRD2P1 RNA 0.16 TCGA-J8-A3YH-01 8 96166895 96166895 A G PLEKHF2 Missense_Mutation p.Y208C 0.10 deleterious(0) probably_damaging(0.98) TCGA-J8-A3YH-01 9 414953 414953 T A DOCK8 Splice_Site p.X1234_splice 0.27 TCGA-J8-A3YH-01 X 51487526 51487526 A T GSPT2 Silent p.T268T 0.07 TCGA-J8-A42S-01 11 104915191 104915191 C A CARD16 Missense_Mutation p.A68S 0.03 deleterious(0.02) probably_damaging(0.966) TCGA-J8-A42S-01 14 52520630 52520630 T A NID2 Nonsense_Mutation p.K366* 0.10 TCGA-J8-A42S-01 16 21011623 21011623 A T DNAH3 Missense_Mutation p.I2115N 0.11 deleterious(0) probably_damaging(0.938) TCGA-J8-A42S-01 16 74683055 74683055 T A RFWD3 Missense_Mutation p.D256V 0.07 tolerated(0.19) benign(0.021) TCGA-J8-A42S-01 16 89253860 89253860 C T CDH15 Silent p.T229T 0.12 TCGA-J8-A42S-01 17 76440797 76440797 G C DNAH17 Missense_Mutation p.S3792W 0.21 probably_damaging(0.931) TCGA-J8-A42S-01 1 43894060 43894060 C T SZT2 Missense_Mutation p.P1300S 0.33 tolerated_low_confidence(0.42) possibly_damaging(0.878) TCGA-J8-A42S-01 20 34220525 34220525 G A CPNE1 Missense_Mutation p.R80C 0.08 deleterious(0) probably_damaging(0.953) TCGA-J8-A42S-01 4 55573401 55573401 T A KIT Missense_Mutation p.F355I 0.19 tolerated(0.1) benign(0.004) TCGA-J8-A42S-01 4 55573419 55573419 G C KIT Missense_Mutation p.D361H 0.19 tolerated(0.55) benign(0.001) TCGA-J8-A42S-01 4 55573421 55573421 T G KIT Missense_Mutation p.D361E 0.20 tolerated(0.38) benign(0) TCGA-J8-A42S-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-J8-A42S-01 7 24749943 24749943 G A DFNA5 Silent p.Y254Y 0.15 TCGA-J8-A42S-01 8 120744381 120744381 C T TAF2 Missense_Mutation p.S1128N 0.22 deleterious_low_confidence(0.02) benign(0.005) TCGA-J8-A4HW-01 10 12228270 12228270 C T NUDT5 Silent p.T7T 0.14 TCGA-J8-A4HW-01 11 55579307 55579307 G A OR5L1 Missense_Mutation p.R122H 0.31 tolerated(0.05) benign(0.02) TCGA-J8-A4HW-01 12 113425106 113425106 C T OAS2 Silent p.N147N 0.53 TCGA-J8-A4HW-01 12 124332605 124332605 G T DNAH10 Missense_Mutation p.C1853F 0.38 probably_damaging(1) TCGA-J8-A4HW-01 13 25075948 25075963 CATTATCTAAGATTAT - PARP4 Frame_Shift_Del p.I48Lfs*4 0.27 TCGA-J8-A4HW-01 15 51520089 51520089 C A CYP19A1 Missense_Mutation p.S113I 0.34 tolerated(0.32) benign(0.073) TCGA-J8-A4HW-01 17 76565292 76565292 A T DNAH17 Missense_Mutation p.F414I 0.27 probably_damaging(0.97) TCGA-J8-A4HW-01 1 235952076 235952076 T C LYST Missense_Mutation p.H1538R 0.11 deleterious(0) benign(0.05) TCGA-J8-A4HW-01 21 45753014 45753014 A G C21orf2 Missense_Mutation p.L92P 0.21 deleterious(0) probably_damaging(0.997) TCGA-J8-A4HW-01 21 46591540 46591540 G A ADARB1 5'UTR 0.19 TCGA-J8-A4HW-01 22 20891439 20891439 G T MED15 Missense_Mutation p.S35I 0.34 deleterious(0.01) unknown(0) TCGA-J8-A4HW-01 2 191926496 191926496 C T STAT4 Silent p.P331P 0.08 TCGA-J8-A4HW-01 2 241468502 241468502 T A ANKMY1 Missense_Mutation p.N213I 0.37 deleterious(0) probably_damaging(0.996) TCGA-J8-A4HW-01 5 167645509 167645509 C T TENM2 Missense_Mutation p.A1538V 0.35 deleterious(0) probably_damaging(0.95) TCGA-J8-A4HW-01 7 150746113 150746113 G A ASIC3 Silent p.A47A 0.08 TCGA-J8-A4HY-01 10 96162368 96162368 C T TBC1D12 5'UTR 0.16 TCGA-J8-A4HY-01 11 1083312 1083312 G A MUC2 Missense_Mutation p.E738K 0.37 benign(0.135) TCGA-J8-A4HY-01 11 119214632 119214632 C A MFRP Nonsense_Mutation p.E340* 0.26 TCGA-J8-A4HY-01 11 121437783 121437783 C T SORL1 Nonsense_Mutation p.Q1062* 0.17 TCGA-J8-A4HY-01 11 65546685 65546685 C T AP5B1 Missense_Mutation p.E427K 0.19 deleterious(0.04) benign(0.202) TCGA-J8-A4HY-01 11 66617415 66617415 C T PC Missense_Mutation p.R964H 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-J8-A4HY-01 12 101764298 101764298 T G UTP20 Missense_Mutation p.I2215S 0.23 deleterious(0) possibly_damaging(0.739) TCGA-J8-A4HY-01 12 122359475 122359475 G A WDR66 Silent p.E88E 0.19 TCGA-J8-A4HY-01 12 51863511 51863511 C T SLC4A8 Missense_Mutation p.A488V 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-J8-A4HY-01 13 93518540 93518540 C T GPC5 Missense_Mutation p.P523S 0.14 tolerated(0.07) benign(0.265) TCGA-J8-A4HY-01 14 102931589 102931591 TGC - TECPR2 In_Frame_Del p.M1251_L1252delinsI 0.14 TCGA-J8-A4HY-01 14 91976004 91976004 G A SMEK1 5'UTR 0.38 TCGA-J8-A4HY-01 15 20496765 20496765 G T CHEK2P2 RNA 0.29 TCGA-J8-A4HY-01 15 41750043 41750043 C T RTF1 Missense_Mutation p.R211C 0.22 deleterious(0.03) benign(0.031) TCGA-J8-A4HY-01 16 12009778 12009778 G A GSPT1 5'Flank 0.21 TCGA-J8-A4HY-01 16 27078386 27078386 G A C16orf82 RNA 0.22 TCGA-J8-A4HY-01 16 30006000 30006000 C T HIRIP3 Missense_Mutation p.G156R 0.21 tolerated(0.29) benign(0.004) TCGA-J8-A4HY-01 16 70530189 70530189 C T COG4 Missense_Mutation p.E543K 0.17 tolerated(0.94) benign(0.013) TCGA-J8-A4HY-01 17 16701828 16701828 C G CCDC144A 3'UTR 0.13 TCGA-J8-A4HY-01 17 37186422 37186422 G A CTD-2206N4.2 5'Flank 0.13 TCGA-J8-A4HY-01 17 43907507 43907507 C T CRHR1 Missense_Mutation p.A190V 0.15 deleterious(0) benign(0.309) TCGA-J8-A4HY-01 19 10220890 10220890 C T PPAN Missense_Mutation p.R264W 0.11 deleterious(0) possibly_damaging(0.707) TCGA-J8-A4HY-01 19 17396247 17396247 C T ANKLE1 Nonsense_Mutation p.Q462* 0.23 TCGA-J8-A4HY-01 19 2476179 2476179 C T GADD45B 5'UTR 0.47 TCGA-J8-A4HY-01 19 35551536 35551536 A G HPN Missense_Mutation p.N209S 0.26 tolerated(0.37) benign(0.028) TCGA-J8-A4HY-01 19 35863030 35863030 T G GPR42 Missense_Mutation p.W257G 0.20 deleterious(0) probably_damaging(1) TCGA-J8-A4HY-01 1 11561768 11561768 C T PTCHD2 Missense_Mutation p.A240V 0.31 tolerated_low_confidence(0.41) benign(0.001) TCGA-J8-A4HY-01 1 115828787 115828787 C T NGF Silent p.A210A 0.26 TCGA-J8-A4HY-01 1 143912445 143912445 C A FAM72D 5'UTR 0.14 TCGA-J8-A4HY-01 20 49576665 49576665 C G MOCS3 Nonsense_Mutation p.S429* 0.25 TCGA-J8-A4HY-01 21 10862774 10862774 G A IGHV1OR21-1 Missense_Mutation p.V24M 0.08 deleterious(0.02) benign(0.244) TCGA-J8-A4HY-01 21 46276212 46276212 G A PTTG1IP Silent p.I115I 0.16 TCGA-J8-A4HY-01 22 49042492 49042492 G A FAM19A5 Missense_Mutation p.A66T 0.35 deleterious(0.01) probably_damaging(0.99) TCGA-J8-A4HY-01 2 127821186 127821186 G A BIN1 Silent p.I245I 0.23 TCGA-J8-A4HY-01 2 235950264 235950264 G A SH3BP4 Missense_Mutation p.R284Q 0.28 deleterious(0.01) probably_damaging(0.932) TCGA-J8-A4HY-01 2 74652207 74652207 C T WDR54 Missense_Mutation p.P214L 0.26 deleterious(0) probably_damaging(0.915) TCGA-J8-A4HY-01 4 8218801 8218801 C T SH3TC1 Missense_Mutation p.A249V 0.17 tolerated(0.25) benign(0.076) TCGA-J8-A4HY-01 4 87724940 87724940 C A PTPN13 Missense_Mutation p.A2200D 0.10 deleterious(0.01) benign(0.114) TCGA-J8-A4HY-01 5 125960507 125960507 G A PHAX Missense_Mutation p.D386N 0.21 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-J8-A4HY-01 5 45262298 45262298 G C HCN1 Missense_Mutation p.L800V 0.23 tolerated_low_confidence(0.38) benign(0.018) TCGA-J8-A4HY-01 5 64887703 64887703 T A TRIM23 Missense_Mutation p.S540C 0.13 deleterious(0.01) possibly_damaging(0.853) TCGA-J8-A4HY-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.15 deleterious(0) probably_damaging(0.967) TCGA-J8-A4HY-01 7 14620522 14620522 C T DGKB Missense_Mutation p.G526D 0.39 deleterious(0.02) probably_damaging(1) TCGA-J8-A4HY-01 7 33014319 33014319 C T FKBP9 Silent p.N104N 0.17 TCGA-J8-A4HY-01 7 75614476 75614476 T C POR Missense_Mutation p.L450P 0.15 deleterious(0) probably_damaging(0.994) TCGA-J8-A4HY-01 7 93516068 93516068 C T TFPI2 3'UTR 0.19 TCGA-J8-A4HY-01 8 1497493 1497493 G A DLGAP2 Missense_Mutation p.G212S 0.30 tolerated(0.08) benign(0.371) TCGA-J8-A4HY-01 9 112899916 112899916 A G PALM2-AKAP2 Missense_Mutation p.T698A 0.19 tolerated(0.2) possibly_damaging(0.539) TCGA-J8-A4HY-01 9 133760038 133760038 G A ABL1 Silent p.V806V 0.46 TCGA-KS-A41F-01 10 33481307 33481307 C T NRP1 Missense_Mutation p.G655D 0.02 tolerated(0.24) benign(0.405) TCGA-KS-A41F-01 10 46999469 46999469 C A GPRIN2 Missense_Mutation p.P197T 0.24 tolerated(0.06) benign(0.017) TCGA-KS-A41F-01 13 99038023 99038023 G - FARP1 Frame_Shift_Del p.K239Rfs*12 0.12 TCGA-KS-A41F-01 17 4844185 4844185 G A RNF167 5'UTR 0.46 TCGA-KS-A41F-01 17 76198628 76198628 A G AFMID Missense_Mutation p.Y68C 0.09 deleterious(0) probably_damaging(0.992) TCGA-KS-A41F-01 1 147091046 147091046 C T BCL9 Missense_Mutation p.S362F 0.04 deleterious(0) probably_damaging(0.996) TCGA-KS-A41F-01 1 155186353 155186353 T C MTX1 3'Flank 0.08 TCGA-KS-A41F-01 2 79385821 79385821 A T REG3A Missense_Mutation p.C51S 0.41 deleterious(0.03) probably_damaging(0.952) TCGA-KS-A41F-01 6 152651592 152651592 G A SYNE1 Missense_Mutation p.T4743I 0.07 probably_damaging(0.921) TCGA-KS-A41F-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-KS-A41F-01 7 81381500 81381500 G A HGF Silent p.P187P 0.05 TCGA-KS-A41F-01 7 99703909 99703909 G A AP4M1 Silent p.V340V 0.36 TCGA-KS-A41F-01 8 143425445 143425445 G A TSNARE1 Silent p.P209P 0.08 TCGA-KS-A41F-01 8 145745726 145745726 G T LRRC14 Missense_Mutation p.R145L 0.14 tolerated(0.12) possibly_damaging(0.74) TCGA-KS-A41F-01 8 17743027 17743027 C T FGL1 Missense_Mutation p.A13T 0.06 tolerated(0.32) benign(0.003) TCGA-KS-A41I-01 10 45920457 45920457 C G ALOX5 Missense_Mutation p.F237L 0.34 deleterious(0.01) possibly_damaging(0.846) TCGA-KS-A41I-01 11 1027027 1027027 A T MUC6 Missense_Mutation p.F770I 0.18 unknown(0) TCGA-KS-A41I-01 12 112657210 112657210 A G HECTD4 Silent p.L2206L 0.24 TCGA-KS-A41I-01 12 124181040 124181040 C T TCTN2 Missense_Mutation p.S464L 0.24 deleterious(0.01) benign(0.004) TCGA-KS-A41I-01 15 42379590 42379590 G T PLA2G4D Missense_Mutation p.P55T 0.06 tolerated(0.14) benign(0.06) TCGA-KS-A41I-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.37 tolerated(0.06) benign(0.006) TCGA-KS-A41I-01 4 123193497 123193497 C G KIAA1109 Missense_Mutation p.L2795V 0.39 probably_damaging(0.99) TCGA-KS-A41I-01 5 13769625 13769625 G A DNAH5 Silent p.N3235N 0.04 TCGA-KS-A41I-01 5 146077635 146077635 C T PPP2R2B Missense_Mutation p.D84N 0.36 deleterious(0) probably_damaging(0.974) TCGA-KS-A41I-01 5 66459102 66459121 CGGAAGGCGAAAGTCCGCCG - MAST4 Frame_Shift_Del p.G1366Qfs*85 0.28 TCGA-KS-A41I-01 8 143957743 143957743 C T CYP11B1 Missense_Mutation p.V290M 0.30 tolerated(0.56) benign(0.269) TCGA-KS-A41I-01 X 152991422 152991422 G A ABCD1 Missense_Mutation p.R234H 0.06 tolerated(0.21) benign(0.022) TCGA-KS-A41J-01 11 56000210 56000210 C T OR5T2 Missense_Mutation p.C151Y 0.41 deleterious(0) possibly_damaging(0.885) TCGA-KS-A41J-01 12 57579590 57579590 C T LRP1 Missense_Mutation p.T2247I 0.04 benign(0.035) TCGA-KS-A41J-01 16 818804 818804 C T MSLN 3'UTR 0.18 TCGA-KS-A41J-01 1 54375745 54375745 C A DIO1 3'UTR 0.09 TCGA-KS-A41J-01 20 62324223 62324223 G T RTEL1 Missense_Mutation p.E930D 0.04 deleterious(0.01) benign(0.173) TCGA-KS-A41J-01 22 45244819 45244819 C T ARHGAP8 Silent p.P374P 0.41 TCGA-KS-A41J-01 22 50686833 50686833 C T HDAC10 Silent p.P325P 0.13 TCGA-KS-A41J-01 2 43452123 43452123 G A ZFP36L2 Missense_Mutation p.L274F 0.55 deleterious(0.01) possibly_damaging(0.86) TCGA-KS-A41J-01 2 71187160 71187160 C T ATP6V1B1 Silent p.R179R 0.34 TCGA-KS-A41J-01 3 112969645 112969645 C T BOC Missense_Mutation p.A114V 0.06 tolerated(0.15) benign(0.344) TCGA-KS-A41J-01 4 3441340 3441340 C T RGS12 Missense_Mutation p.P1425S 0.09 deleterious_low_confidence(0.05) benign(0.06) TCGA-KS-A41J-01 5 178413693 178413693 G A GRM6 Missense_Mutation p.P521L 0.05 deleterious(0.01) probably_damaging(0.995) TCGA-KS-A41J-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.46 deleterious(0) probably_damaging(0.967) TCGA-KS-A41L-01 12 57570840 57570840 G A LRP1 Silent p.E1336E 0.30 TCGA-KS-A41L-01 13 24860393 24860393 G T SPATA13 Missense_Mutation p.W781C 0.40 deleterious(0) probably_damaging(0.999) TCGA-KS-A41L-01 17 8273090 8273090 T C KRBA2 Missense_Mutation p.I281V 0.48 deleterious(0.02) possibly_damaging(0.471) TCGA-KS-A41L-01 19 52001329 52001329 T A SIGLEC12 Missense_Mutation p.N450Y 0.28 deleterious(0.03) probably_damaging(0.992) TCGA-KS-A41L-01 1 64114306 64114306 C T PGM1 Silent p.G439G 0.41 TCGA-KS-A41L-01 2 168104097 168104097 G T XIRP2 Missense_Mutation p.W2065C 0.06 benign(0.036) TCGA-KS-A41L-01 2 176964709 176964709 C A HOXD12 Silent p.P60P 0.08 TCGA-KS-A41L-01 5 128844806 128844806 A T ADAMTS19 Missense_Mutation p.I256F 0.09 deleterious(0) probably_damaging(0.993) TCGA-KS-A41L-01 8 39463842 39463842 C A ADAM18 Missense_Mutation p.T50K 0.24 tolerated(0.75) benign(0.132) TCGA-KS-A41L-01 9 5044449 5044449 C T JAK2 Missense_Mutation p.R133W 0.37 deleterious(0) probably_damaging(0.989) TCGA-KS-A41L-01 X 149101910 149101910 G T CXorf40B Silent p.L61L 0.05 TCGA-KS-A41L-01 X 26212267 26212267 G A MAGEB6 Missense_Mutation p.V102I 0.05 tolerated(0.47) benign(0.001) TCGA-KS-A4I1-01 15 37002124 37002124 C T C15orf41 Silent p.H226H 0.05 TCGA-KS-A4I1-01 15 70366914 70366914 G A TLE3 Silent p.R110R 0.62 TCGA-KS-A4I1-01 16 31391686 31391686 G T ITGAX Missense_Mutation p.G1054C 0.07 deleterious(0) possibly_damaging(0.883) TCGA-KS-A4I1-01 16 814961 814961 G A MSLN Silent p.T145T 0.27 TCGA-KS-A4I1-01 2 128238615 128238615 C A IWS1 3'UTR 0.06 TCGA-KS-A4I1-01 4 20490475 20490475 C T SLIT2 Silent p.C215C 0.37 TCGA-KS-A4I1-01 4 6083476 6083476 G A JAKMIP1 Missense_Mutation p.R321C 0.42 deleterious(0) probably_damaging(0.949) TCGA-KS-A4I1-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.49 deleterious(0) probably_damaging(0.967) TCGA-KS-A4I1-01 8 144999620 144999620 G T PLEC Missense_Mutation p.Q1630K 0.10 unknown(0) TCGA-KS-A4I1-01 X 154774817 154774817 A C TMLHE Missense_Mutation p.W41G 0.42 tolerated_low_confidence(0.27) benign(0.001) TCGA-KS-A4I1-01 X 91132473 91132473 T C PCDH11X Missense_Mutation p.F412L 0.04 tolerated(0.33) possibly_damaging(0.879) TCGA-KS-A4I3-01 10 292819 292819 G A ZMYND11 Missense_Mutation p.R355H 0.25 deleterious(0.01) possibly_damaging(0.797) TCGA-KS-A4I3-01 11 133790063 133790063 C T IGSF9B Missense_Mutation p.R1186H 0.37 deleterious_low_confidence(0) possibly_damaging(0.874) TCGA-KS-A4I3-01 12 64827210 64827210 T G XPOT Missense_Mutation p.F760C 0.44 deleterious(0) benign(0.275) TCGA-KS-A4I3-01 13 114535648 114535648 G C GAS6 Silent p.T304T 0.10 TCGA-KS-A4I3-01 19 52793760 52793760 G T ZNF766 Missense_Mutation p.G239V 0.12 deleterious(0) probably_damaging(1) TCGA-KS-A4I3-01 6 41196189 41196189 C A TREML4 Silent p.T8T 0.22 TCGA-KS-A4I3-01 7 103230092 103230092 C T RELN Missense_Mutation p.E1366K 0.36 tolerated(0.19) possibly_damaging(0.491) TCGA-KS-A4I3-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-KS-A4I3-01 7 149523622 149523622 G A SSPO RNA 0.38 TCGA-KS-A4I3-01 7 33055412 33055412 G A NT5C3A Missense_Mutation p.T260I 0.09 deleterious(0.01) benign(0.383) TCGA-KS-A4I3-01 7 66420527 66420527 T G TMEM248 3'UTR 0.07 TCGA-KS-A4I3-01 8 53028862 53028862 G T ST18 Missense_Mutation p.S992R 0.14 deleterious(0) probably_damaging(0.934) TCGA-KS-A4I3-01 9 14859445 14859445 G A FREM1 Silent p.L123L 0.36 TCGA-KS-A4I5-01 11 113815463 113815463 G A HTR3B Missense_Mutation p.R359H 0.39 tolerated(0.12) benign(0.003) TCGA-KS-A4I5-01 11 92568204 92568204 G C FAT3 Missense_Mutation p.S3347T 0.39 benign(0.085) TCGA-KS-A4I5-01 15 78837982 78837982 G A PSMA4 Missense_Mutation p.R128H 0.42 deleterious(0) possibly_damaging(0.762) TCGA-KS-A4I5-01 17 17380300 17380300 G A MED9 5'UTR 0.15 TCGA-KS-A4I5-01 17 39551564 39551564 G A KRT31 Missense_Mutation p.A270V 0.05 tolerated(0.07) benign(0.086) TCGA-KS-A4I5-01 17 8093098 8093098 A C C17orf59 Missense_Mutation p.S121A 0.29 tolerated_low_confidence(1) benign(0) TCGA-KS-A4I5-01 1 158583518 158583518 G T SPTA1 Missense_Mutation p.P2328T 0.29 deleterious(0) probably_damaging(0.999) TCGA-KS-A4I5-01 3 196678722 196678722 C T PIGZ Missense_Mutation p.E61K 0.06 deleterious(0) probably_damaging(0.991) TCGA-KS-A4I5-01 3 197239158 197239158 C A BDH1 Missense_Mutation p.G214W 0.35 deleterious(0) probably_damaging(1) TCGA-KS-A4I5-01 5 140725487 140725487 G A PCDHGA3 Silent p.A629A 0.31 TCGA-KS-A4I5-01 6 7231362 7231362 C T RREB1 Silent p.G1010G 0.11 TCGA-KS-A4I5-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.34 deleterious(0) probably_damaging(0.967) TCGA-KS-A4I5-01 8 13251080 13251080 T G DLC1 Silent p.G432G 0.49 TCGA-KS-A4I5-01 8 139668161 139668161 C T COL22A1 Silent p.G1104G 0.05 TCGA-KS-A4I5-01 X 57146759 57146759 C T SPIN2B Missense_Mutation p.E102K 0.22 tolerated(0.21) benign(0.003) TCGA-KS-A4I7-01 16 30581350 30581351 - C ZNF688 Frame_Shift_Ins p.R240Afs*19 0.13 TCGA-KS-A4I7-01 1 16258731 16258731 A G SPEN Missense_Mutation p.K1999R 0.07 benign(0.002) TCGA-KS-A4I7-01 1 186295347 186295347 T A TPR Missense_Mutation p.E1970D 0.17 benign(0) TCGA-KS-A4I7-01 1 220232059 220232059 T C BPNT1 3'UTR 0.08 TCGA-KS-A4I7-01 1 26646917 26646917 G A CD52 3'UTR 0.56 TCGA-KS-A4I7-01 2 212589892 212589892 C A ERBB4 Missense_Mutation p.C217F 0.07 deleterious(0) probably_damaging(1) TCGA-KS-A4I7-01 4 156136301 156136301 G A NPY2R 3'UTR 0.25 TCGA-KS-A4I7-01 6 32164797 32164797 G A NOTCH4 Missense_Mutation p.T1702I 0.13 deleterious(0) probably_damaging(1) TCGA-KS-A4I7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-KS-A4I7-01 X 70598692 70598692 G A TAF1 Missense_Mutation p.E411K 0.36 tolerated(0.4) benign(0.002) TCGA-KS-A4I9-01 17 37809863 37809863 T G STARD3 Missense_Mutation p.S27A 0.42 deleterious(0.01) benign(0.1) TCGA-KS-A4I9-01 17 39525654 39525654 C A KRT33B Splice_Site p.X116_splice 0.31 TCGA-KS-A4I9-01 17 62542046 62542046 G A SMURF2 Missense_Mutation p.P723S 0.42 deleterious(0) probably_damaging(0.991) TCGA-KS-A4I9-01 19 58578512 58578512 A G ZNF135 Silent p.G244G 0.05 TCGA-KS-A4I9-01 1 154842238 154842238 T A KCNN3 Missense_Mutation p.Q68L 0.21 tolerated_low_confidence(0.36) unknown(0) TCGA-KS-A4I9-01 22 45970525 45970525 G A FBLN1 Missense_Mutation p.R611H 0.25 tolerated(0.17) possibly_damaging(0.84) TCGA-KS-A4I9-01 5 101599455 101599455 G C SLCO4C1 Missense_Mutation p.P278A 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-KS-A4I9-01 5 82937298 82937298 G A HAPLN1 3'UTR 0.39 TCGA-KS-A4I9-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.18 deleterious(0) probably_damaging(0.967) TCGA-KS-A4I9-01 8 144332178 144332178 A C ZFP41 Missense_Mutation p.E55D 0.39 tolerated(0.27) benign(0.007) TCGA-KS-A4I9-01 8 38005761 38005761 C T STAR Missense_Mutation p.G88D 0.34 tolerated(0.13) benign(0.001) TCGA-KS-A4IB-01 10 18840835 18840835 C A NSUN6 Nonsense_Mutation p.G330* 0.31 TCGA-KS-A4IB-01 10 43601916 43601916 C T RET Silent p.P320P 0.41 TCGA-KS-A4IB-01 12 68689117 68689117 G A MDM1 Missense_Mutation p.R688C 0.39 deleterious(0.01) probably_damaging(0.979) TCGA-KS-A4IB-01 14 24880401 24880401 G A NYNRIN Missense_Mutation p.R845Q 0.05 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-KS-A4IB-01 14 62203750 62203750 A G HIF1A Missense_Mutation p.K415R 0.43 deleterious(0) probably_damaging(0.973) TCGA-KS-A4IB-01 14 75476040 75476041 TA - EIF2B2 3'UTR 0.57 TCGA-KS-A4IB-01 15 23048861 23048861 C G NIPA1 Missense_Mutation p.E320Q 0.26 tolerated(0.88) benign(0.001) TCGA-KS-A4IB-01 15 71300716 71300716 A G LRRC49 Splice_Site p.X395_splice 0.10 TCGA-KS-A4IB-01 17 11687720 11687720 C T DNAH9 Missense_Mutation p.A2642V 0.43 benign(0.005) TCGA-KS-A4IB-01 1 157718364 157718364 T C FCRL2 Missense_Mutation p.M480V 0.59 tolerated(0.57) benign(0) TCGA-KS-A4IB-01 1 66379023 66379023 C T PDE4B Missense_Mutation p.T9M 0.39 deleterious_low_confidence(0) benign(0.169) TCGA-KS-A4IB-01 22 29121246 29121246 G C CHEK2 Missense_Mutation p.H186Q 0.89 deleterious(0) probably_damaging(1) TCGA-KS-A4IB-01 3 49691756 49691756 C G BSN Silent p.P1589P 0.33 TCGA-KS-A4IB-01 7 100230955 100230955 G C TFR2 Missense_Mutation p.P208R 0.43 tolerated(0.24) benign(0.064) TCGA-KS-A4IB-01 7 101877481 101877481 G T CUX1 Missense_Mutation p.V1206L 0.42 deleterious(0.02) unknown(0) TCGA-KS-A4IB-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.30 deleterious(0) probably_damaging(0.967) TCGA-KS-A4IB-01 8 63985561 63985561 C A TTPA Missense_Mutation p.K97N 0.44 tolerated(0.46) benign(0.007) TCGA-KS-A4IB-01 X 152613380 152613380 G A ZNF275 3'UTR 0.50 TCGA-KS-A4IC-01 14 50472373 50472373 G A C14orf182 Nonsense_Mutation p.R49* 0.07 TCGA-KS-A4IC-01 1 53553738 53553738 G A SLC1A7 Silent p.P542P 0.38 TCGA-KS-A4IC-01 6 167549983 167549983 G A CCR6 Missense_Mutation p.A89T 0.06 deleterious(0) probably_damaging(0.997) TCGA-KS-A4IC-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.40 deleterious(0) probably_damaging(0.967) TCGA-KS-A4IC-01 7 142032030 142032030 G A TRBV7-1 5'UTR 0.23 TCGA-KS-A4ID-01 10 1046705 1046705 G T GTPBP4 Missense_Mutation p.R248L 0.12 deleterious(0) probably_damaging(0.961) TCGA-KS-A4ID-01 11 56237418 56237418 C G OR5M3 Missense_Mutation p.A186P 0.08 deleterious(0) benign(0.16) TCGA-KS-A4ID-01 12 130921558 130921558 G T RIMBP2 Missense_Mutation p.S628R 0.35 deleterious(0.02) benign(0.16) TCGA-KS-A4ID-01 14 102549601 102549601 C A HSP90AA1 Nonsense_Mutation p.E631* 0.22 TCGA-KS-A4ID-01 14 103596143 103596143 C T TNFAIP2 Silent p.P309P 0.32 TCGA-KS-A4ID-01 14 103958164 103958164 G T MARK3 Missense_Mutation p.S546I 0.26 deleterious(0.05) benign(0.288) TCGA-KS-A4ID-01 14 71443799 71443799 C T PCNX Missense_Mutation p.H249Y 0.09 tolerated_low_confidence(0.51) benign(0.016) TCGA-KS-A4ID-01 16 20327340 20327340 C T GP2 Missense_Mutation p.R483H 0.05 deleterious(0.03) benign(0.329) TCGA-KS-A4ID-01 16 90126908 90126908 C G PRDM7 Silent p.G358G 0.19 TCGA-KS-A4ID-01 17 263327 263327 C T C17orf97 Silent p.A231A 0.08 TCGA-KS-A4ID-01 17 65888050 65888050 C A BPTF Missense_Mutation p.T652N 0.11 probably_damaging(0.941) TCGA-KS-A4ID-01 1 151380882 151380882 G C POGZ Intron 0.32 TCGA-KS-A4ID-01 3 53259692 53259692 C A TKT 3'UTR 0.19 TCGA-KS-A4ID-01 4 158065014 158065014 C T GLRB Silent p.Y269Y 0.30 TCGA-KS-A4ID-01 5 168096871 168096871 T C SLIT3 Missense_Mutation p.H1418R 0.23 tolerated(0.47) benign(0.017) TCGA-KS-A4ID-01 9 130672308 130672308 C T ST6GALNAC4 Missense_Mutation p.G214D 0.08 probably_damaging(0.979) TCGA-L6-A4EP-01 11 74800178 74800178 C T OR2AT4 Missense_Mutation p.C194Y 0.13 deleterious(0) probably_damaging(0.998) TCGA-L6-A4EP-01 12 55356225 55356225 T C TESPA1 Missense_Mutation p.D486G 0.07 deleterious_low_confidence(0.01) benign(0.037) TCGA-L6-A4EP-01 14 75265980 75265980 A G YLPM1 Missense_Mutation p.D1327G 0.07 probably_damaging(0.991) TCGA-L6-A4EP-01 16 83998897 83998897 G A OSGIN1 Missense_Mutation p.R240H 0.07 tolerated(0.22) benign(0.016) TCGA-L6-A4EP-01 17 42987560 42987560 C G GFAP 3'Flank 0.40 TCGA-L6-A4EP-01 20 62631011 62631011 C T PRPF6 Missense_Mutation p.H308Y 0.08 deleterious(0.01) possibly_damaging(0.853) TCGA-L6-A4EP-01 2 18765449 18765449 T C NT5C1B Missense_Mutation p.I326V 0.04 tolerated(0.23) benign(0.012) TCGA-L6-A4EP-01 2 198265531 198265531 T A SF3B1 Missense_Mutation p.M876L 0.35 tolerated(0.16) benign(0.001) TCGA-L6-A4EP-01 2 207011657 207011657 T C NDUFS1 Missense_Mutation p.Y250C 0.10 deleterious(0) probably_damaging(0.995) TCGA-L6-A4EP-01 2 71206350 71206350 G A ANKRD53 Silent p.Q98Q 0.13 TCGA-L6-A4EP-01 3 23942418 23942418 T C NKIRAS1 Missense_Mutation p.K73E 0.07 deleterious(0.01) benign(0.363) TCGA-L6-A4EP-01 5 115177236 115177236 G A ATG12 Missense_Mutation p.P5L 0.08 deleterious_low_confidence(0.01) benign(0.016) TCGA-L6-A4EP-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-L6-A4EP-01 8 97621772 97621772 C T SDC2 Missense_Mutation p.A201V 0.08 deleterious(0) probably_damaging(0.997) TCGA-L6-A4EP-01 X 53654447 53654447 C T HUWE1 Missense_Mutation p.R468Q 0.36 probably_damaging(0.993) TCGA-L6-A4EQ-01 11 16760325 16760325 G C C11orf58 5'UTR 0.08 TCGA-L6-A4EQ-01 14 68053956 68053956 T C PLEKHH1 3'UTR 0.46 TCGA-L6-A4EQ-01 16 30780529 30780529 A C RNF40 Missense_Mutation p.E757A 0.04 deleterious(0) probably_damaging(0.987) TCGA-L6-A4EQ-01 16 3293676 3293676 G A MEFV Missense_Mutation p.A604V 0.03 tolerated(0.25) benign(0.01) TCGA-L6-A4EQ-01 16 68289778 68289778 G A PLA2G15 Silent p.T204T 0.46 TCGA-L6-A4EQ-01 19 8168496 8168496 C T FBN3 Missense_Mutation p.C1630Y 0.45 deleterious(0) probably_damaging(0.987) TCGA-L6-A4EQ-01 1 145562072 145562072 G C ANKRD35 Missense_Mutation p.R587T 0.43 tolerated(0.6) benign(0.001) TCGA-L6-A4EQ-01 1 203671203 203671203 C G ATP2B4 Missense_Mutation p.N311K 0.35 tolerated(0.29) benign(0.011) TCGA-L6-A4EQ-01 1 210971076 210971076 C T KCNH1 Missense_Mutation p.M563I 0.27 deleterious(0.02) benign(0.118) TCGA-L6-A4EQ-01 21 44513235 44513235 G A U2AF1 Missense_Mutation p.R234C 0.07 tolerated(0.06) unknown(0) TCGA-L6-A4EQ-01 2 3749214 3749214 T A ALLC Silent p.L321L 0.40 TCGA-L6-A4EQ-01 3 139258330 139258330 C T RBP1 Silent p.E77E 0.31 TCGA-L6-A4EQ-01 3 38051629 38051629 G C PLCD1 Missense_Mutation p.A398G 0.40 deleterious(0.01) probably_damaging(0.978) TCGA-L6-A4EQ-01 6 30153814 30153814 G A TRIM26 Missense_Mutation p.R487W 0.58 deleterious(0) unknown(0) TCGA-L6-A4EQ-01 6 31727947 31727947 T A MSH5 Missense_Mutation p.V589D 0.40 deleterious(0) probably_damaging(0.924) TCGA-L6-A4EQ-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.38 deleterious(0) probably_damaging(0.967) TCGA-L6-A4EQ-01 9 136901310 136901310 G A BRD3 Missense_Mutation p.R594W 0.08 deleterious(0) probably_damaging(0.983) TCGA-L6-A4EQ-01 9 18817126 18817126 G A ADAMTSL1 Silent p.T1275T 0.35 TCGA-L6-A4EQ-01 9 26999613 26999613 C G LRRC19 Missense_Mutation p.R27T 0.38 tolerated(0.93) benign(0) TCGA-L6-A4EQ-01 X 41043349 41043349 C G USP9X Missense_Mutation p.P1083A 0.10 tolerated(0.28) benign(0.097) TCGA-L6-A4ET-01 10 27035361 27035361 C A PDSS1 Missense_Mutation p.L403I 0.32 deleterious(0.02) probably_damaging(0.998) TCGA-L6-A4ET-01 11 118240215 118240215 G C UBE4A Missense_Mutation p.D125H 0.10 tolerated(0.09) possibly_damaging(0.698) TCGA-L6-A4ET-01 12 52567461 52567461 C T KRT80 Missense_Mutation p.V252M 0.06 deleterious(0.02) possibly_damaging(0.56) TCGA-L6-A4ET-01 14 24569430 24569430 C T PCK2 Intron 0.10 TCGA-L6-A4ET-01 16 3019765 3019765 G A PAQR4 Silent p.R30R 0.28 TCGA-L6-A4ET-01 17 18150313 18150313 G A FLII Silent p.F910F 0.10 TCGA-L6-A4ET-01 18 2728543 2728543 A G SMCHD1 Silent p.L954L 0.43 TCGA-L6-A4ET-01 1 11249916 11249916 C T ANGPTL7 Missense_Mutation p.R94W 0.11 deleterious(0) probably_damaging(0.999) TCGA-L6-A4ET-01 2 143790821 143790821 T G KYNU Silent p.P324P 0.35 TCGA-L6-A4ET-01 3 15124046 15124046 A T ZFYVE20 Missense_Mutation p.V223D 0.08 tolerated(0.37) benign(0.431) TCGA-L6-A4ET-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.43 deleterious(0) probably_damaging(0.967) TCGA-L6-A4EU-01 10 101945419 101945419 C T ERLIN1 5'UTR 0.07 TCGA-L6-A4EU-01 10 126312016 126312016 A C FAM53B Missense_Mutation p.V355G 0.52 tolerated(0.36) benign(0.004) TCGA-L6-A4EU-01 10 13541899 13541899 G C BEND7 Silent p.L57L 0.07 TCGA-L6-A4EU-01 10 13708199 13708199 G A FRMD4A Silent p.L501L 0.24 TCGA-L6-A4EU-01 10 88419672 88419672 C A OPN4 Missense_Mutation p.A285D 0.07 tolerated(0.25) benign(0.049) TCGA-L6-A4EU-01 10 96162370 96162370 G A TBC1D12 5'UTR 0.18 TCGA-L6-A4EU-01 10 99349675 99349675 G C C10orf62 Missense_Mutation p.K7N 0.05 deleterious(0.04) possibly_damaging(0.801) TCGA-L6-A4EU-01 11 1011065 1011065 C T AP2A2 3'UTR 0.18 TCGA-L6-A4EU-01 11 111955943 111955943 G A TIMM8B 3'UTR 0.33 TCGA-L6-A4EU-01 11 55658652 55658652 C G TRIM51 Missense_Mutation p.F301L 0.13 tolerated(0.65) benign(0.013) TCGA-L6-A4EU-01 11 71260295 71260295 G A KRTAP5-9 3'UTR 0.18 TCGA-L6-A4EU-01 12 100551837 100551837 C T AC010203.1 5'Flank 0.18 TCGA-L6-A4EU-01 12 107372093 107372093 C T MTERFD3 Missense_Mutation p.E134K 0.34 tolerated(0.06) possibly_damaging(0.644) TCGA-L6-A4EU-01 12 54651351 54651351 C A CBX5 Missense_Mutation p.R28S 0.39 deleterious(0.04) probably_damaging(0.987) TCGA-L6-A4EU-01 12 6747434 6747434 G A ACRBP 3'UTR 0.15 TCGA-L6-A4EU-01 12 72057031 72057031 A C ZFC3H1 Silent p.P120P 0.38 TCGA-L6-A4EU-01 13 43462494 43462494 G A EPSTI1 Silent p.V375V 0.35 TCGA-L6-A4EU-01 15 59146961 59146961 C T FAM63B 3'UTR 0.32 TCGA-L6-A4EU-01 15 86287926 86287926 G A AKAP13 3'UTR 0.06 TCGA-L6-A4EU-01 16 19711771 19711771 C T C16orf62 Silent p.L1044L 0.35 TCGA-L6-A4EU-01 16 4557905 4557905 G A HMOX2 Silent p.Q132Q 0.08 TCGA-L6-A4EU-01 16 56782199 56782199 G A NUP93 Missense_Mutation p.E14K 0.07 deleterious(0.05) benign(0.129) TCGA-L6-A4EU-01 16 67233140 67233140 C - ELMO3 Frame_Shift_Del p.P24Lfs*38 0.47 TCGA-L6-A4EU-01 16 72821420 72821420 A C ZFHX3 Silent p.S3585S 0.38 TCGA-L6-A4EU-01 16 78064504 78064504 G C CLEC3A Missense_Mutation p.R129S 0.18 deleterious(0.01) benign(0.009) TCGA-L6-A4EU-01 17 57642992 57642992 C T DHX40 5'UTR 0.52 TCGA-L6-A4EU-01 18 28972184 28972184 G C DSG4 Missense_Mutation p.D296H 0.07 deleterious(0) probably_damaging(1) TCGA-L6-A4EU-01 19 16799102 16799102 C G TMEM38A Missense_Mutation p.Q274E 0.04 tolerated(1) benign(0.013) TCGA-L6-A4EU-01 19 40947970 40947970 C T SERTAD3 Silent p.K6K 0.41 TCGA-L6-A4EU-01 1 147410854 147410854 C T GPR89B Silent p.I43I 0.16 TCGA-L6-A4EU-01 1 181767468 181767468 C G CACNA1E Missense_Mutation p.S2147C 0.07 deleterious(0) probably_damaging(0.971) TCGA-L6-A4EU-01 1 245006477 245006477 G C COX20 Nonstop_Mutation p.*119Sext*29 0.05 TCGA-L6-A4EU-01 1 38022591 38022591 C T DNALI1 Missense_Mutation p.S21F 0.09 tolerated(0.07) benign(0.001) TCGA-L6-A4EU-01 1 39799522 39799522 C T MACF1 Intron 0.05 TCGA-L6-A4EU-01 1 40318540 40318540 C A TRIT1 Missense_Mutation p.E141D 0.04 tolerated(0.31) benign(0.008) TCGA-L6-A4EU-01 20 37153437 37153437 A T RALGAPB Missense_Mutation p.I546F 0.44 tolerated(0.7) possibly_damaging(0.742) TCGA-L6-A4EU-01 22 29915049 29915049 G C THOC5 Missense_Mutation p.L479V 0.04 tolerated(0.09) possibly_damaging(0.636) TCGA-L6-A4EU-01 22 34046477 34046477 C T LARGE Missense_Mutation p.R95Q 0.06 tolerated_low_confidence(0.65) benign(0.014) TCGA-L6-A4EU-01 22 37171923 37171923 C T IFT27 5'UTR 0.44 TCGA-L6-A4EU-01 2 143986205 143986205 A G ARHGAP15 Missense_Mutation p.K118E 0.14 deleterious(0) probably_damaging(0.988) TCGA-L6-A4EU-01 2 186672259 186672259 G C FSIP2 Missense_Mutation p.D6165H 0.06 possibly_damaging(0.576) TCGA-L6-A4EU-01 2 27165613 27165613 G C DPYSL5 Missense_Mutation p.E479Q 0.31 tolerated(0.13) possibly_damaging(0.575) TCGA-L6-A4EU-01 2 44174896 44174896 C G LRPPRC Missense_Mutation p.E647Q 0.17 tolerated(0.09) benign(0.011) TCGA-L6-A4EU-01 2 96687874 96687874 G A GPAT2 3'UTR 0.09 TCGA-L6-A4EU-01 3 183685541 183685541 C T ABCC5 Missense_Mutation p.G592E 0.04 deleterious(0) probably_damaging(0.996) TCGA-L6-A4EU-01 3 33450189 33450189 C T UBP1 Missense_Mutation p.R307Q 0.07 tolerated(0.38) benign(0.406) TCGA-L6-A4EU-01 3 49210251 49210251 A G KLHDC8B Missense_Mutation p.M17V 0.26 deleterious(0.01) probably_damaging(0.952) TCGA-L6-A4EU-01 3 49933541 49933541 C T MST1R Splice_Site p.X884_splice 0.29 TCGA-L6-A4EU-01 3 64527091 64527091 C G ADAMTS9 Splice_Site p.X1765_splice 0.05 TCGA-L6-A4EU-01 3 89156697 89156697 G A EPHA3 5'UTR 0.50 TCGA-L6-A4EU-01 3 89156699 89156699 A G EPHA3 5'UTR 0.54 TCGA-L6-A4EU-01 4 113360974 113360974 G A ALPK1 Missense_Mutation p.G1162S 0.39 deleterious(0.03) possibly_damaging(0.887) TCGA-L6-A4EU-01 4 436799 436801 GAG - ZNF721 In_Frame_Del p.S487del 0.40 TCGA-L6-A4EU-01 4 79403640 79403640 G A FRAS1 Silent p.L2901L 0.04 TCGA-L6-A4EU-01 5 121413255 121413255 C T LOX Silent p.A142A 0.42 TCGA-L6-A4EU-01 5 140710854 140710855 - AGAGAAG PCDHGA1 Frame_Shift_Ins p.E205Rfs*14 0.23 TCGA-L6-A4EU-01 5 148730885 148730885 C T GRPEL2 3'UTR 0.13 TCGA-L6-A4EU-01 5 40854171 40854171 C T CARD6 Nonsense_Mutation p.Q913* 0.05 TCGA-L6-A4EU-01 5 40854298 40854298 C G CARD6 Missense_Mutation p.S955C 0.08 tolerated(0.09) benign(0.376) TCGA-L6-A4EU-01 5 52097426 52097426 G T PELO Nonsense_Mutation p.E304* 0.28 TCGA-L6-A4EU-01 6 110935704 110935704 C T CDK19 3'UTR 0.06 TCGA-L6-A4EU-01 6 111583465 111583465 G A KIAA1919 Silent p.L11L 0.04 TCGA-L6-A4EU-01 6 155054940 155054940 C T SCAF8 5'UTR 0.29 TCGA-L6-A4EU-01 6 42626418 42626418 G A UBR2 Missense_Mutation p.R1033K 0.06 tolerated(0.13) benign(0.235) TCGA-L6-A4EU-01 6 56496024 56496024 G A DST Missense_Mutation p.S839F 0.23 probably_damaging(0.956) TCGA-L6-A4EU-01 7 105517017 105517017 C T ATXN7L1 5'UTR 0.46 TCGA-L6-A4EU-01 7 130027837 130027837 G C CPA1 Silent p.L415L 0.05 TCGA-L6-A4EU-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.48 deleterious(0) probably_damaging(0.967) TCGA-L6-A4EU-01 7 142650897 142650897 C G KEL Missense_Mutation p.Q357H 0.06 tolerated(1) benign(0) TCGA-L6-A4EU-01 7 66296199 66296199 C T GTF2IRD1P1 RNA 0.09 TCGA-L6-A4EU-01 7 98507778 98507778 C T TRRAP Silent p.L484L 0.04 TCGA-L6-A4EU-01 8 118159317 118159317 G A SLC30A8 Missense_Mutation p.E66K 0.04 tolerated(0.21) benign(0.055) TCGA-L6-A4EU-01 8 125072866 125072866 C T FER1L6 Silent p.C1021C 0.32 TCGA-L6-A4EU-01 8 12957007 12957007 G A DLC1 Missense_Mutation p.P947S 0.05 tolerated(0.05) probably_damaging(0.999) TCGA-L6-A4EU-01 8 15998324 15998324 G A MSR1 Intron 0.10 TCGA-L6-A4EU-01 9 112963659 112963662 CAGA - C9orf152 Frame_Shift_Del p.S96Rfs*69 0.37 TCGA-L6-A4EU-01 9 134021671 134021671 C T NUP214 Missense_Mutation p.S642L 0.03 benign(0) TCGA-L6-A4EU-01 9 140777389 140777389 C G CACNA1B Intron 0.04 TCGA-L6-A4EU-01 9 32457322 32457322 C T DDX58 Missense_Mutation p.R859K 0.14 tolerated(1) benign(0) TCGA-L6-A4EU-01 9 74360334 74360334 C T TMEM2 Missense_Mutation p.E212K 0.29 tolerated(0.44) benign(0.016) TCGA-L6-A4EU-01 X 107834385 107834385 T G COL4A5 Silent p.P421P 0.28 TCGA-L6-A4EU-01 X 118708873 118708873 G A UBE2A Silent p.E18E 0.39 TCGA-L6-A4EU-01 X 51076162 51076162 G A NUDT10 Silent p.R115R 0.08 TCGA-MK-A4N6-01 11 118374951 118374951 A G KMT2A Missense_Mutation p.K2782E 0.23 possibly_damaging(0.869) TCGA-MK-A4N6-01 11 85375047 85375047 C T CREBZF Silent p.L291L 0.07 TCGA-MK-A4N6-01 19 18779952 18779952 A T KLHL26 Missense_Mutation p.N582I 0.30 deleterious(0) probably_damaging(0.989) TCGA-MK-A4N6-01 1 243736307 243736307 C T AKT3 Missense_Mutation p.R247H 0.09 deleterious(0.03) possibly_damaging(0.765) TCGA-MK-A4N6-01 1 71512720 71512720 C A PTGER3 Missense_Mutation p.V181L 0.07 tolerated(0.12) possibly_damaging(0.837) TCGA-MK-A4N6-01 21 30714912 30714912 A - BACH1 Frame_Shift_Del p.S658Vfs*71 0.21 TCGA-MK-A4N6-01 22 45210582 45210582 G A ARHGAP8 Silent p.V232V 0.09 TCGA-MK-A4N6-01 2 89309913 89309913 C G IGKV1-9 Silent p.L14L 0.16 TCGA-MK-A4N6-01 5 101794169 101794169 G A SLCO6A1 Missense_Mutation p.R350C 0.43 tolerated(0.06) benign(0.064) TCGA-MK-A4N6-01 5 154395925 154395925 G A KIF4B Missense_Mutation p.D836N 0.33 deleterious(0) probably_damaging(0.994) TCGA-MK-A4N6-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-MK-A4N6-01 8 22054270 22054270 A T BMP1 Nonsense_Mutation p.K615* 0.33 TCGA-MK-A4N6-01 X 48631755 48631755 A G GLOD5 Silent p.P129P 0.58 TCGA-MK-A4N7-01 10 123279544 123279544 C G FGFR2 Missense_Mutation p.K296N 0.10 tolerated(0.08) possibly_damaging(0.501) TCGA-MK-A4N7-01 11 118951865 118951865 C G VPS11 Silent p.V833V 0.06 TCGA-MK-A4N7-01 14 103410646 103410646 G C CDC42BPB Silent p.L1330L 0.10 TCGA-MK-A4N7-01 19 3821446 3821446 G A ZFR2 Missense_Mutation p.T508M 0.40 tolerated(0.05) benign(0.004) TCGA-MK-A4N7-01 1 115321764 115321764 G A SIKE1 Missense_Mutation p.A140V 0.35 tolerated(0.29) benign(0.004) TCGA-MK-A4N7-01 1 6341211 6341211 T A ACOT7 Missense_Mutation p.Y332F 0.35 tolerated(0.51) benign(0.01) TCGA-MK-A4N7-01 20 5965510 5965510 C G MCM8 Missense_Mutation p.S606C 0.12 deleterious(0) probably_damaging(1) TCGA-MK-A4N7-01 22 29446145 29446145 C G ZNRF3 Missense_Mutation p.S659C 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-MK-A4N7-01 2 1915828 1915828 C T MYT1L Missense_Mutation p.R556H 0.50 deleterious(0) probably_damaging(0.988) TCGA-MK-A4N7-01 2 210559316 210559316 G T MAP2 Nonsense_Mutation p.E808* 0.11 TCGA-MK-A4N7-01 4 15629584 15629584 T C FBXL5 Missense_Mutation p.H322R 0.47 tolerated(0.44) benign(0.14) TCGA-MK-A4N7-01 6 151671522 151671522 C A AKAP12 Missense_Mutation p.P666T 0.30 tolerated(0.29) probably_damaging(0.942) TCGA-MK-A4N7-01 6 32134709 32134709 G A EGFL8 Silent p.L119L 0.13 TCGA-MK-A4N7-01 7 103202062 103202062 G T RELN Missense_Mutation p.L1816I 0.27 tolerated(0.33) probably_damaging(0.992) TCGA-MK-A4N7-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-MK-A4N7-01 8 23167321 23167321 G A LOXL2 Silent p.L580L 0.09 TCGA-MK-A4N7-01 9 113234582 113234582 G A SVEP1 Missense_Mutation p.A874V 0.11 benign(0.01) TCGA-MK-A4N7-01 9 4662753 4662753 G C PPAPDC2 Silent p.S126S 0.07 TCGA-MK-A4N7-01 X 118893168 118893168 G A SOWAHD Missense_Mutation p.V180M 0.60 deleterious(0.03) possibly_damaging(0.592) TCGA-MK-A4N7-01 X 151806720 151806720 G A GABRQ Missense_Mutation p.E22K 0.07 deleterious_low_confidence(0) possibly_damaging(0.637) TCGA-MK-A4N7-01 X 33357499 33357499 T A DMD 5'UTR 0.39 TCGA-MK-A4N7-01 X 53575049 53575049 G A HUWE1 Silent p.S3407S 0.30 TCGA-MK-A4N9-01 12 7343014 7343014 C G PEX5 Missense_Mutation p.A14G 0.03 deleterious(0.04) benign(0.314) TCGA-MK-A4N9-01 12 96180969 96180969 A C NTN4 Missense_Mutation p.D111E 0.05 deleterious(0.04) benign(0.014) TCGA-MK-A4N9-01 19 46308064 46308064 C T RSPH6A Missense_Mutation p.E367K 0.16 tolerated(0.06) possibly_damaging(0.643) TCGA-MK-A4N9-01 1 23688438 23688438 T C ZNF436 3'UTR 0.23 TCGA-MK-A4N9-01 5 135389735 135389735 G A TGFBI Silent p.L410L 0.13 TCGA-MK-A4N9-01 6 108582193 108582193 C T SNX3 5'UTR 0.17 TCGA-MK-A4N9-01 6 36651871 36651871 C T CDKN1A Intron 0.43 TCGA-MK-A4N9-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.37 deleterious(0) probably_damaging(0.967) TCGA-MK-A4N9-01 8 4494931 4494931 G C CSMD1 Missense_Mutation p.L79V 0.04 probably_damaging(0.995) TCGA-MK-A4N9-01 X 23019751 23019751 T C DDX53 Missense_Mutation p.I526T 0.06 deleterious(0) benign(0.116) TCGA-MK-A84Z-01 11 12923583 12923583 T - TEAD1 Frame_Shift_Del p.P267Lfs*7 0.08 TCGA-MK-A84Z-01 11 533874 533874 T C HRAS Missense_Mutation p.Q61R 0.39 tolerated(0.07) benign(0.069) TCGA-MK-A84Z-01 11 64135606 64135606 A - RPS6KA4 Frame_Shift_Del p.Y359Tfs*16 0.20 TCGA-MK-A84Z-01 12 118598096 118598096 G A TAOK3 Missense_Mutation p.A736V 0.34 tolerated(0.11) benign(0.314) TCGA-MK-A84Z-01 12 22048219 22048219 G A ABCC9 Missense_Mutation p.A550V 0.32 tolerated(0.29) benign(0.035) TCGA-MK-A84Z-01 13 41379306 41379306 G C SLC25A15 Missense_Mutation p.V123L 0.34 deleterious(0.02) benign(0.216) TCGA-MK-A84Z-01 15 85259343 85259343 G A SEC11A 5'UTR 0.28 TCGA-MK-A84Z-01 19 8808501 8808501 G A ACTL9 Missense_Mutation p.S184F 0.28 deleterious(0) probably_damaging(0.93) TCGA-MK-A84Z-01 1 10714146 10714146 G A CASZ1 Silent p.Y656Y 0.38 TCGA-MK-A84Z-01 1 92442625 92442625 C A BRDT Missense_Mutation p.A215E 0.40 deleterious(0) probably_damaging(0.915) TCGA-MK-A84Z-01 20 48500445 48500445 C T SLC9A8 Missense_Mutation p.R461W 0.06 deleterious(0) possibly_damaging(0.888) TCGA-MK-A84Z-01 2 228884216 228884216 C T SPHKAP Missense_Mutation p.V452I 0.05 tolerated(1) benign(0.001) TCGA-MK-A84Z-01 3 9413207 9413207 A G THUMPD3 Missense_Mutation p.N265S 0.44 deleterious(0.05) benign(0.082) TCGA-MK-A84Z-01 5 153174277 153174277 C T GRIA1 Silent p.S799S 0.45 TCGA-MK-A84Z-01 5 173317377 173317377 T G CPEB4 Missense_Mutation p.V214G 0.41 deleterious_low_confidence(0) benign(0.354) TCGA-MK-A84Z-01 5 424018 424018 G C AHRR Missense_Mutation p.E216Q 0.30 deleterious(0.02) probably_damaging(0.935) TCGA-MK-A84Z-01 6 170159117 170159117 C T ERMARD Silent p.N187N 0.35 TCGA-MK-A84Z-01 6 44198386 44198386 T C SLC29A1 Missense_Mutation p.L224P 0.24 deleterious(0) probably_damaging(0.936) TCGA-MK-A84Z-01 7 113519446 113519446 G A PPP1R3A Silent p.S567S 0.34 TCGA-MK-A84Z-01 7 150325064 150325064 G T GIMAP6 Missense_Mutation p.Q208K 0.43 tolerated(0.1) benign(0.156) TCGA-MK-A84Z-01 8 143623463 143623463 G A BAI1 Missense_Mutation p.G1290S 0.42 tolerated(0.28) benign(0.133) TCGA-MK-A84Z-01 9 110249320 110249320 C A KLF4 Missense_Mutation p.R418L 0.41 deleterious(0) benign(0.072) TCGA-QD-A8IV-01 11 100064362 100064362 G A CNTN5 Silent p.E617E 0.40 TCGA-QD-A8IV-01 11 120169019 120169019 C A POU2F3 Missense_Mutation p.H62N 0.42 tolerated(0.33) benign(0.075) TCGA-QD-A8IV-01 11 281038 281038 G C NLRP6 Missense_Mutation p.G435A 0.08 tolerated(0.5) benign(0.006) TCGA-QD-A8IV-01 11 73071517 73071517 C T ARHGEF17 Silent p.F1453F 0.42 TCGA-QD-A8IV-01 13 46066331 46066331 A T COG3 Missense_Mutation p.Q378L 0.47 deleterious(0) possibly_damaging(0.858) TCGA-QD-A8IV-01 16 417713 417713 C A MRPL28 Nonsense_Mutation p.E245* 0.44 TCGA-QD-A8IV-01 16 50828308 50828308 G A CYLD Nonsense_Mutation p.W885* 0.38 TCGA-QD-A8IV-01 18 9124980 9124980 A G NDUFV2 Missense_Mutation p.Y193C 0.38 deleterious(0) probably_damaging(0.986) TCGA-QD-A8IV-01 19 8808059 8808059 G A ACTL9 Silent p.R331R 0.45 TCGA-QD-A8IV-01 1 115256529 115256529 T C NRAS Missense_Mutation p.Q61R 0.45 tolerated(0.06) benign(0.006) TCGA-QD-A8IV-01 X 104993041 104993041 C T IL1RAPL2 Silent p.N379N 0.30 TCGA-QD-A8IV-01 X 151138673 151138673 C A GABRE Silent p.L86L 0.35